From ab222d59f35165cb5bb157ea0ae4672c56a1e896 Mon Sep 17 00:00:00 2001 From: LuppovDaniil Date: Thu, 8 Aug 2024 01:01:32 +0300 Subject: [PATCH] #382 data fixed --- chunks/PMID_34811538.txt | 26753 ++++++++++++++++--------------------- 1 file changed, 11799 insertions(+), 14954 deletions(-) diff --git a/chunks/PMID_34811538.txt b/chunks/PMID_34811538.txt index 5ffb115..eb7639a 100644 --- a/chunks/PMID_34811538.txt +++ b/chunks/PMID_34811538.txt @@ -1,14954 +1,11799 @@ -chunk.id meta.clone.id UMAP_1 UMAP_2 chip meta.subject.id meta.subject.cohort TCRa_1st_cdr_nt cdr3.alpha v.alpha j.alpha TCRa_1st_umi_count TCRa_1st_read_count TCRa_2nd_cdr_nt TCRa_2nd_cdr_aa TCRa_2nd_v TCRa_2nd_j TCRa_2nd_umi_count TCRa_2nd_read_count TCRa_2nd_umi_perc TCRb_1st_cdr_nt cdr3.beta v.beta j.beta TCRb_1st_umi_count TCRb_1st_read_count TCR tcr.frequency GeneMID specificity.final gene.final SignalRatio specificity.frequency threshold15 mRNAcount AbCount Cluster antigen.species antigen.gene antigen.epitope meta.cell.subset meta.tissue method.identification method.singlecell method.sequencing reference.id d.beta species mhc.a mhc.b mhc.class method.frequency method.verification meta.study.id meta.subset.frequency meta.replica.id meta.epitope.id meta.donor.MHC meta.donor.MHC.method meta.structure.id -1 chip0420_69709 5.53 8.51 Chip1 T1D_2 T1D TGTGCTATGGAAGGGAATTCAGGATACAGCACCCTCACCTTT CAMEGNSGYSTLTF TRAV17*01 TRAJ11*01 625.0 26698.0 TGTGCCAGCAGCCGACAGGGAGGGAAGGATGGCTACACCTTC CASSRQGGKDGYTF TRBV6-1*01 TRBJ1-2*01 97.0 4738.0 CAMEGNSGYSTLTF_CASSRQGGKDGYTF 1 9238 EBV-LMP2-FLY EBV 0.81 355 NEG 1201 8037 6 EBV LMP2 FLYALALLL central memory T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*02:01 B2M MHCI -2 chip0420_385621 13.51 6.56 Chip1 T1D_2 T1D TGTGCCAGCAGAGGCTTGACAGGGGGCGCGTCCGAGCAGTACTTC CASRGLTGGASEQYF TRBV6-1*01 TRBJ2-7*01 9.0 307.0 _CASRGLTGGASEQYF 2 7174 EBV-BRLF1 EBV 0.89 1264 EBV-BRLF1 842 6332 10 EBV BRLF1 YVLDHLIVV effector memory T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*02:01 B2M MHCI -3 chip0420_243839 13.63 6.63 Chip1 T1D_2 T1D TGTGCCGTGAAGGACACCGACAAGCTCATCTTT CAVKDTDKLIF TRAV8-1*01 TRAJ34*01 9.0 953.0 CAVKDTDKLIF_ 56 6362 EBV-BRLF1 EBV 0.95 1264 EBV-BRLF1 800 5562 10 EBV BRLF1 YVLDHLIVV effector memory T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*02:01 B2M MHCI -4 chip0420_202260 13.51 6.57 Chip1 T1D_1 T1D TGTGCTCTCTATAACACCGACAAGCTCATCTTT CALYNTDKLIF TRAV9-2*01 TRAJ34*01 19.0 2055.0 TGTGCCAGCAGCCCAGTTAGCGAGTCAACCTACGAGCAGTACTTC CASSPVSESTYEQYF TRBV3-1*01 TRBJ2-7*01 30.0 1984.0 CALYNTDKLIF_CASSPVSESTYEQYF 1 7065 M1 FLU 0.59 1250 M1 923 6142 10 InfluenzaA M1 GILGFVFTL effector memory T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*02:01 B2M MHCI -5 chip0420_545856 13.25 6.41 Chip1 T1D_1 T1D TGCGGCACAGAGGAACCTAACGACTACAAGCTCAGCTTT CGTEEPNDYKLSF TRAV30*01 TRAJ20*01 269.0 16797.0 TGTGCCAGCAGCACGGGACAGCTATCGAACACCGGGGAGCTGTTTTTT CASSTGQLSNTGELFF TRBV9*01 TRBJ2-2*01 108.0 5493.0 CGTEEPNDYKLSF_CASSTGQLSNTGELFF 18 5122 EBV-BLMF1 EBV 0.92 2531 NEG 882 4240 10 EBV BLMF1 GLCTLVAML effector memory T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*02:01 B2M MHCI -6 chip0420_598967 5.49 8.54 Chip1 T1D_1 T1D TGTGCTCCGGCCGGGGCTTCCGGATACAGCACCCTCACCTTT CAPAGASGYSTLTF TRAV17*01 TRAJ11*01 248.0 10517.0 TGTGCCAGCAGTGTGCAGGGAGGTAACTATGGCTACACCTTC CASSVQGGNYGYTF TRBV6-1*01 TRBJ1-2*01 135.0 6323.0 CAPAGASGYSTLTF_CASSVQGGNYGYTF 1 8429 EBV-LMP2-FLY EBV 1.0 355 NEG 700 7729 6 EBV LMP2 FLYALALLL central memory T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*02:01 B2M MHCI -7 chip0420_720349 12.14 6.04 Chip1 T1D_2 T1D TGTGCTCCGGCGGGGCCTTCAGGATACAGCACCCTCACCTTT CAPAGPSGYSTLTF TRAV17*01 TRAJ11*01 51.0 2111.0 TGTGCCAGCTCACTTCGGGGGGGTTCCTTCTATGGCTACACCTTC CASSLRGGSFYGYTF TRBV6-1*01 TRBJ1-2*01 51.0 2175.0 CAPAGPSGYSTLTF_CASSLRGGSFYGYTF 1 7166 EBV-LMP2-FLY EBV 0.88 355 EBV-LMP2-FLY 727 6439 6 EBV LMP2 FLYALALLL central memory T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*02:01 B2M MHCI -8 chip0420_729345 13.03 6.2 Chip1 T1D_1 T1D TGTGCCGTGGACCCATGGGGTAACCAGTTCTATTTT CAVDPWGNQFYF TRAV39*01 TRAJ49*01 88.0 6289.0 TGTGCCACCCAACAGGGGAGGGACAGTCAGCCCCAGCATTTT CATQQGRDSQPQHF TRBV28*01 TRBJ1-5*01 29.0 1444.0 CAVDPWGNQFYF_CATQQGRDSQPQHF 16 5391 EBV-BLMF1 EBV 0.82 2531 NEG 699 4692 10 EBV BLMF1 GLCTLVAML effector memory T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*02:01 B2M MHCI -9 chip0420_758216 13.58 6.62 Chip1 T1D_1 T1D TGTGCCAGCAGCCCAGTTAGCGGGTCAACCTACGAGCAGTACTTC CASSPVSGSTYEQYF TRBV3-1*01 TRBJ2-7*01 28.0 1532.0 _CASSPVSGSTYEQYF 80 5512 EBV-BLMF1 EBV 0.69 2531 EBV-BLMF1 578 4934 10 EBV BLMF1 GLCTLVAML effector memory T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*02:01 B2M MHCI -10 chip0420_771794 13.02 6.21 Chip1 T1D_2 T1D TGTGCCGTGAAGGACACCGACAAGCTCATCTTT CAVKDTDKLIF TRAV8-1*01 TRAJ34*01 41.0 3799.0 TGTGCCACCAGTGATTTGTTCTCCAATGAGCAGTTCTTC CATSDLFSNEQFF TRBV24-1*01 TRBJ2-1*01 45.0 3440.0 CAVKDTDKLIF_CATSDLFSNEQFF 1 5789 EBV-BRLF1 EBV 0.99 1264 EBV-BRLF1 557 5232 10 EBV BRLF1 YVLDHLIVV effector memory T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*02:01 B2M MHCI -11 chip0420_798071 5.56 8.64 Chip1 T1D_1 T1D TGTGCCGGCAGTGTGGAGGGAGGTAACTATGGCTACACTTTC CAGSVEGGNYGYTF TRBV6-1*01 TRBJ1-2*01 10.0 659.0 _CAGSVEGGNYGYTF 1 4420 EBV-LMP2-FLY EBV 1.0 355 NEG 510 3910 6 EBV LMP2 FLYALALLL central memory T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*02:01 B2M MHCI -12 chip0420_53926 12.11 6.04 Chip1 T1D_1 T1D TGTGCTCTGATCTACTATGGAGGAAGCCAAGGAAATCTCATCTTT CALIYYGGSQGNLIF TRAV19*01 TRAJ42*01 66.0 2195.0 TGTGCCACTTTTCCGGACGGCTCCTACGAGCAGTACTTC CATFPDGSYEQYF TRBV28*01 TRBJ2-7*01 76.0 5820.0 CALIYYGGSQGNLIF_CATFPDGSYEQYF 2 8396 EBV-LMP1-1 EBV 1.0 237 NEG 405 7991 6 EBV LMP1 YLLEMLWRL central memory T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*02:01 B2M MHCI -13 chip0420_141406 13.5 6.57 Chip1 T1D_1 T1D TGCGGCACAGAGGAACCTAACGACTACAAGCTCAGCTTT CGTEEPNDYKLSF TRAV30*01 TRAJ20*01 64.0 3553.0 TGTGCCAGCAGCACGGGACAGCTATCGAACACCGGGGAGCTGTTTTTT CASSTGQLSNTGELFF TRBV9*01 TRBJ2-2*01 145.0 6230.0 CGTEEPNDYKLSF_CASSTGQLSNTGELFF 18 5015 EBV-BLMF1 EBV 0.92 2531 NEG 454 4561 10 EBV BLMF1 GLCTLVAML effector memory T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*02:01 B2M MHCI -14 chip0420_773167 7.76 8.01 Chip1 T1D_2 T1D TGTGCAGCGGCTGGTGGTACTAGCTATGGAAAGCTGACATTT CAAAGGTSYGKLTF TRAV25*01 TRAJ52*01 46.0 2232.0 TGTGCCAGCAGTTTCTACATGAACACTGAAGCTTTCTTT CASSFYMNTEAFF TRBV6-5*01 TRBJ1-1*01 49.0 1853.0 CAAAGGTSYGKLTF_CASSFYMNTEAFF 1 7813 EBV-BLMF1 EBV 0.4 2531 NEG 409 7404 8 EBV BLMF1 GLCTLVAML effector memory T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*02:01 B2M MHCI -15 chip0420_614910 10.36 6.58 Chip1 T1D_1 T1D TGCATCCTGAGACGCTATGGAGGAAGCCAAGGAAATCTCATCTTT CILRRYGGSQGNLIF TRAV26-2*01 TRAJ42*01 103.0 4059.0 TGTGCCAGCAGCCCAGTTAGCGGGTCAACCTACGAGCAGTACTTC CASSPVSGSTYEQYF TRBV3-1*01 TRBJ2-7*01 41.0 2655.0 CILRRYGGSQGNLIF_CASSPVSGSTYEQYF 8 8646 EBV-BLMF1 EBV 0.83 2531 EBV-BLMF1 421 8225 10 EBV BLMF1 GLCTLVAML effector memory T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*02:01 B2M MHCI -16 chip0420_45388 8.76 8.28 Chip1 T1D_2 T1D TGCAGCGTGGGGACAGGGGGAACTAATGAAAAACTGTTTTTT CSVGTGGTNEKLFF TRBV29-1*01 TRBJ1-4*01 217.0 10056.0 _CSVGTGGTNEKLFF 638 7217 EBV-BLMF1 EBV 0.5 2531 NEG 429 6788 8 EBV BLMF1 GLCTLVAML effector memory T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*02:01 B2M MHCI -17 chip0420_336963 13.51 6.64 Chip1 T1D_1 T1D TGTGCTGACTTAGAATGCTGGCAACAACCGTAAGCTGATTTGG CADLECW??cNNRKLIW TRAV36/DV7*01 TRAJ38*01 48.0 1997.0 TGTGCCAGCAGCACGGGACAGCTATCGAACACCGGGGAGCTGTTTTTT CASSTGQLSNTGELFF TRBV9*01 TRBJ2-2*01 30.0 1380.0 CADLECW??cNNRKLIW_CASSTGQLSNTGELFF 2 4822 EBV-BLMF1 EBV 0.6 2531 NEG 397 4425 10 EBV BLMF1 GLCTLVAML effector memory T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*02:01 B2M MHCI -18 chip0420_819541 5.59 8.79 Chip1 T1D_2 T1D TGTGCCAGCAGTTTACAGGGTGGGAACTATGGCTACACCTTC CASSLQGGNYGYTF TRBV6-5*01 TRBJ1-2*01 101.0 4097.0 _CASSLQGGNYGYTF 4 6484 EBV-LMP2-FLY EBV 1.0 355 EBV-LMP2-FLY 446 6038 6 EBV LMP2 FLYALALLL central memory T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*02:01 B2M MHCI -19 chip0420_467798 5.57 8.65 Chip1 T1D_1 T1D TGTGCCGTGAATGGGTTTTCTGGTGGCTACAATAAGCTGATTTTT CAVNGFSGGYNKLIF TRAV8-1*01 TRAJ4*01 68.0 3262.0 TGTGCCAGCAGCCCGGGGGACGCCCGTGGCGAGCAGTACTTC CASSPGDARGEQYF TRBV5-6*01 TRBJ2-7*01 72.0 3413.0 CAVNGFSGGYNKLIF_CASSPGDARGEQYF 1 4727 EBV-LMP1-1 EBV 0.81 237 NEG 436 4291 6 EBV LMP1 YLLEMLWRL central memory T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*02:01 B2M MHCI -20 chip0420_711916 9.05 7.57 Chip1 T1D_2 T1D TGTGCTCTAAAAAACACCGACAAGCTCATCTTT CALKNTDKLIF TRAV16*01 TRAJ34*01 9.0 706.0 TGCAGCGTTGTGTCGGGACAACCCGAGGTGGATACGCAGTATTTT CSVVSGQPEVDTQYF TRBV29-1*01 TRBJ2-3*01 261.0 14125.0 CALKNTDKLIF_CSVVSGQPEVDTQYF 1 8165 PGT-178 PGT 0.61 1480 PGT-178 360 7805 8 HomoSapiens PGT LLAGIGTVPI effector memory T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*02:01 B2M MHCI -21 chip0420_749880 13.39 6.62 Chip1 T1D_1 T1D TGCATCCTGAGACACTATGGAGGAAGCCAAGGAAATCTCATCTTT CILRHYGGSQGNLIF TRAV26-2*01 TRAJ42*01 2.0 195.0 TGTGCCAGCAGCCCAGTTAGCGGGTCAACCTACGAGCAGTACTTC CASSPVSGSTYEQYF TRBV3-1*01 TRBJ2-7*01 62.0 3619.0 CILRHYGGSQGNLIF_CASSPVSGSTYEQYF 1 3489 EBV-BLMF1 EBV 0.77 2531 EBV-BLMF1 417 3072 10 EBV BLMF1 GLCTLVAML effector memory T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*02:01 B2M MHCI -22 chip0420_244041 8.08 8.58 Chip1 T1D_2 T1D TGTGCAGCATACGCAGGCAACTTGCTCACCTTT CAAYAGNLLTF TRAV29/DV5*01 TRAJ39*01 28.0 2235.0 CAAYAGNLLTF_ 1 7390 EBV-BRLF1 EBV 0.68 1264 EBV-BRLF1 368 7022 8 EBV BRLF1 YVLDHLIVV effector memory T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*02:01 B2M MHCI -23 chip0420_819933 12.0 6.03 Chip1 T1D_2 T1D TGTGCCAGCAGTTTATACTACAATGAGCAGTTCTTC CASSLYYNEQFF TRBV12-3*01,TRBV12-4*01 TRBJ2-1*01 73.0 5899.0 _CASSLYYNEQFF 4 6460 EBV-LMP1-1 EBV 0.95 237 EBV-LMP1-1 366 6094 6 EBV LMP1 YLLEMLWRL central memory T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*02:01 B2M MHCI -24 chip0420_127544 11.3 6.52 Chip1 T1D_1 T1D TGCAGCGTCGGCTCCAGGGGAACTAATGAAAAACTGTTTTTT CSVGSRGTNEKLFF TRBV29-1*01 TRBJ1-4*01 146.0 9079.0 _CSVGSRGTNEKLFF 283 5143 EBV-BLMF1 EBV 0.67 2531 NEG 355 4788 10 EBV BLMF1 GLCTLVAML effector memory T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*02:01 B2M MHCI -25 chip0420_810050 13.65 7.16 Chip1 T1D_1 T1D TGTGCTCTCTATAACACCGACAAGCTCATCTTT CALYNTDKLIF TRAV9-2*01 TRAJ34*01 25.0 2060.0 TGTGCCAGCAGCCCAGTTAGCGGGTCAACCTACGAGCAGTACTTC CASSPVSGSTYEQYF TRBV3-1*01 TRBJ2-7*01 3.0 90.0 CALYNTDKLIF_CASSPVSGSTYEQYF 15 3002 EBV-BLMF1 EBV 1.0 2531 NEG 365 2637 10 EBV BLMF1 GLCTLVAML effector memory T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*02:01 B2M MHCI -26 chip0420_723171 13.52 6.67 Chip1 T1D_1 T1D TGTGCAGAGGCGGCCAACCAGGCAGGAACTGCTCTGATCTTT CAEAANQAGTALIF TRAV5*01 TRAJ15*01 14.0 947.0 TGTGCCAGCAGCCAAAGCCCGGGTGGTACGCAGTATTTT CASSQSPGGTQYF TRBV14*01 TRBJ2-3*01 37.0 1900.0 CAEAANQAGTALIF_CASSQSPGGTQYF 9 4320 EBV-BLMF1 EBV 0.77 2531 NEG 356 3964 10 EBV BLMF1 GLCTLVAML effector memory T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*02:01 B2M MHCI -27 chip0420_281974 7.95 8.63 Chip1 T1D_2 T1D TGTGCAGCAAGCGGAGGAGGTGCTGACGGACTCCCCTTT CAASGGGADGLPF TRAV29/DV5*01 TRAJ45*01 24.0 1419.0 TGCAGCGTGGGGACAGGGGGAACTAATGAAAAACTGTTTTTT CSVGTGGTNEKLFF TRBV29-1*01 TRBJ1-4*01 79.0 3969.0 CAASGGGADGLPF_CSVGTGGTNEKLFF 1 9972 EBV-BLMF1 EBV 0.71 2531 NEG 368 9604 8 EBV BLMF1 GLCTLVAML effector memory T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*02:01 B2M MHCI -28 chip0420_351719 13.18 6.9 Chip1 T1D_1 T1D TGTGCCAGCAGCCAAAGCCCGGGTGGTACGCAGTATTTT CASSQSPGGTQYF TRBV14*01 TRBJ2-3*01 23.0 1072.0 _CASSQSPGGTQYF 94 3415 EBV-BLMF1 EBV 1.0 2531 NEG 331 3084 10 EBV BLMF1 GLCTLVAML effector memory T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*02:01 B2M MHCI -29 chip0420_211557 8.59 8.44 Chip1 T1D_1 T1D TGTGCTGTGAGTGATTTGGGAATGACATGCGCTTT CAVSDtt?GNDMRF TRAV8-4*01 TRAJ43*01 3.0 324.0 TGCAGCGTCGGCTCCAGGGGAACTAATGAAAAACTGTTTTTT CSVGSRGTNEKLFF TRBV29-1*01 TRBJ1-4*01 301.0 14784.0 CAVSDtt?GNDMRF_CSVGSRGTNEKLFF 6 6204 EBV-BLMF1 EBV 0.48 2531 NEG 348 5856 8 EBV BLMF1 GLCTLVAML effector memory T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*02:01 B2M MHCI -30 chip0420_256016 14.46 7.68 Chip1 T1D_2 T1D TGTGTGGTGAACGGCAGGGATAGCGGCTATAAATTGATCTTC CVVNGRDSGYKLIF TRAV12-1*01 TRAJ12*01 35.0 1115.0 TGTGCCAGCAGCTCGGGACTAGTCGCCCCCGGGGAGCTGTTTTTT CASSSGLVAPGELFF TRBV2*01 TRBJ2-2*01 73.0 2748.0 CVVNGRDSGYKLIF_CASSSGLVAPGELFF 2 4281 EBV-BLMF1 EBV 0.55 2531 NEG 370 3911 10 EBV BLMF1 GLCTLVAML effector memory T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*02:01 B2M MHCI -31 chip0420_127096 14.0 7.05 Chip1 T1D_2 T1D TGTGCTGTGAGAGACGACAGAGATGACAAGATCATCTTT CAVRDDRDDKIIF TRAV3*01 TRAJ30*01 113.0 6335.0 TGTGCCAGCCGCTTAAACGCGGGAGAGTGGTATGGCTACACCTTC CASRLNAGEWYGYTF TRBV11-2*01 TRBJ1-2*01 23.0 1136.0 CAVRDDRDDKIIF_CASRLNAGEWYGYTF 1 4215 EBV-BLMF1 EBV 0.8 2531 NEG 381 3834 10 EBV BLMF1 GLCTLVAML effector memory T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*02:01 B2M MHCI -32 chip0420_859575 8.64 7.9 Chip1 T1D_1 T1D TGTGTGGTGAACGGGGGGGATAGCAGCTATAAATTGATCTTC CVVNGGDSSYKLIF TRAV12-1*01 TRAJ12*01 43.0 2135.0 TGTGCAGAGAATATTATAACACCGACAAGCTCATCTTT CAENIIa?cTDKLIF TRAV13-2*01 TRAJ34*01 45.0 2527.0 0.31 TGTGCCAGCAGTTCGGGACAGGTACTTCCCAATGAGCAGTTCTTC CASSSGQVLPNEQFF TRBV2*01 TRBJ2-1*01 28.0 2014.0 CVVNGGDSSYKLIF_CASSSGQVLPNEQFF 31 6800 EBV-BLMF1 EBV 0.45 2531 NEG 357 6443 8 EBV BLMF1 GLCTLVAML effector memory T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*02:01 B2M MHCI -33 chip0420_561202 11.63 6.17 Chip1 T1D_2 T1D TGTGCAGAGAGTACTTCGGGAGGAAAGCTTATCTTC CAESTSGGKLIF TRAV5*01 TRAJ23*01 15.0 957.0 TGCAGCGTGGGGACAGGGGGAACTAATGAAAAACTGTTTTTT CSVGTGGTNEKLFF TRBV29-1*01 TRBJ1-4*01 386.0 20146.0 CAESTSGGKLIF_CSVGTGGTNEKLFF 107 4560 EBV-BLMF1 EBV 0.69 2531 NEG 365 4195 10 EBV BLMF1 GLCTLVAML effector memory T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*02:01 B2M MHCI -34 chip0420_399224 12.37 6.3 Chip1 T1D_1 T1D TGCATCCTGTGGCGCTATGGTGGTGGCCAAGGAAATCTCATCTTT CILWRYGGGQGNLIF TRAV26-2*01 TRAJ42*01 60.0 2134.0 TGTGCCAGCAGCCCAGTTAGCGGGTCAACCTACGAGCAGTACTTC CASSPVSGSTYEQYF TRBV3-1*01 TRBJ2-7*01 25.0 1237.0 CILWRYGGGQGNLIF_CASSPVSGSTYEQYF 1 5748 EBV-BLMF1 EBV 0.82 2531 EBV-BLMF1 377 5371 10 EBV BLMF1 GLCTLVAML effector memory T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*02:01 B2M MHCI -35 chip0420_119404 12.93 6.38 Chip1 T1D_2 T1D TGTGCCACCAGTGATTTCCTTGAGGAGACCCAGTACTTC CATSDFLEETQYF TRBV24-1*01 TRBJ2-5*01 11.0 635.0 _CATSDFLEETQYF 2 4089 EBV-BRLF1 EBV 0.89 1264 EBV-BRLF1 379 3710 10 EBV BRLF1 YVLDHLIVV effector memory T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*02:01 B2M MHCI -36 chip0420_706090 8.43 8.42 Chip1 T1D_1 T1D TGCATCCTATTTATGCTGGTGGTACTAGCTATGGAAAGCTGACATTT CILFMLVgt?TSYGKLTF TRAV26-2*01 TRAJ52*01 54.0 2054.0 TGTGCCAGCAGTTCGGGACAGGTACTTCCCAATGAGCAGTTCTTC CASSSGQVLPNEQFF TRBV2*01 TRBJ2-1*01 29.0 1413.0 CILFMLVgt?TSYGKLTF_CASSSGQVLPNEQFF 1 8284 EBV-BLMF1 EBV 0.83 2531 NEG 351 7933 8 EBV BLMF1 GLCTLVAML effector memory T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*02:01 B2M MHCI -37 chip0420_816770 15.65 9.19 Chip1 T1D_2 T1D TGTGCCCTGAACACCGACAAGCTCATCTTT CALNTDKLIF TRAV8-1*01 TRAJ34*01 31.0 2843.0 TGTGCCAGCGGCACTCTAGCGGGGGCTGGGCAGACCCAGTACTTC CASGTLAGAGQTQYF TRBV3-1*01 TRBJ2-5*01 35.0 2263.0 CALNTDKLIF_CASGTLAGAGQTQYF 2 2867 EBV-BRLF1 EBV 0.44 1264 NEG 311 2556 12 EBV BRLF1 YVLDHLIVV effector T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*02:01 B2M MHCI -38 chip0420_731090 8.57 7.68 Chip1 T1D_2 T1D TGTGCCGTGAAAGTAGGCTTT CAVKVGF TRAV12-2*01 TRAJ48*01 21.0 2018.0 TGTGCAGCGTATGCAGGCAACATGCTCACCTTT CAAYAGNMLTF TRAV29/DV5*01 TRAJ39*01 19.0 2051.0 0.23 TGCGCCAGCAGAGCGGGAGCCGGGGATACGCAGTATTTT CASRAGAGDTQYF TRBV10-2*01 TRBJ2-3*01 48.0 2945.0 CAVKVGF_CASRAGAGDTQYF 1 7656 PGT-178 PGT 0.49 1480 PGT-178 367 7289 8 HomoSapiens PGT LLAGIGTVPI effector memory T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*02:01 B2M MHCI -39 chip0420_640485 6.26 14.07 Chip1 tet_neg TGTGCCAGCAGTGAAGGGCGAGTCTCTCCGGGCGAAGCTTTCTTT CASSEGRVSPGEAFF TRBV2*01 TRBJ1-1*01 2.0 101.0 _CASSEGRVSPGEAFF 29 5675 EBV-BLMF1 EBV 0.56 2531 NEG 344 5331 7 EBV BLMF1 GLCTLVAML transitional T cells between effector and memory populations PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*02:01 B2M MHCI -40 chip0420_733838 9.01 7.58 Chip1 T1D_1 T1D TGTGCCAGCAGAGTAAGCGGGGGACCCAATGAGCAGTTCTTC CASRVSGGPNEQFF TRBV11-1*01 TRBJ2-1*01 82.0 3680.0 _CASRVSGGPNEQFF 1 10838 EBV-BRLF1 EBV 0.67 1264 EBV-BRLF1 349 10489 8 EBV BRLF1 YVLDHLIVV effector memory T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*02:01 B2M MHCI -41 chip0420_836072 13.69 7.94 Chip1 T1D_1 T1D TGTGCTCTCTATAACACCGACAAGCTCATCTTT CALYNTDKLIF TRAV9-2*01 TRAJ34*01 1.0 240.0 TGTGCCAGCAGCCCAGTTAGCGGGTCAACCTACGAGCAGTACTTC CASSPVSGSTYEQYF TRBV3-1*01 TRBJ2-7*01 33.0 1977.0 CALYNTDKLIF_CASSPVSGSTYEQYF 15 1797 EBV-BLMF1 EBV 1.0 2531 NEG 383 1414 10 EBV BLMF1 GLCTLVAML effector memory T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*02:01 B2M MHCI -42 chip0420_310247 12.26 6.1 Chip1 T1D_2 T1D TGTGTGGTGAACGGGAAGGATAGCAGCTATAAATTGATCTTC CVVNGKDSSYKLIF TRAV12-1*01 TRAJ12*01 80.0 4232.0 TGTGCCAGCAGTGGAGGGGCGGTCGCGCCGAGTGAGCAGTTCTTC CASSGGAVAPSEQFF TRBV2*01 TRBJ2-1*01 29.0 2315.0 CVVNGKDSSYKLIF_CASSGGAVAPSEQFF 12 7501 EBV-BLMF1 EBV 0.83 2531 NEG 349 7152 10 EBV BLMF1 GLCTLVAML effector memory T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*02:01 B2M MHCI -43 chip0420_387359 8.6 8.38 Chip1 T1D_1 T1D TGTGCCAGCAGTGACGGTCGGGTCCACCCGGGGACCCAGTACTTC CASSDGRVHPGTQYF TRBV2*01 TRBJ2-5*01 12.0 779.0 _CASSDGRVHPGTQYF 24 8403 EBV-BLMF1 EBV 0.71 2531 EBV-BLMF1 337 8066 8 EBV BLMF1 GLCTLVAML effector memory T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*02:01 B2M MHCI -44 chip0420_561515 11.24 6.17 Chip1 T1D_1 T1D TGTGCCAGCAGTATTCGAGCGGGAGGGGCCTACGAGCAGTACTTC CASSIRAGGAYEQYF TRBV28*01 TRBJ2-7*01 210.0 12963.0 _CASSIRAGGAYEQYF 3 9404 EBV-LMP1-1 EBV 0.54 237 EBV-LMP1-1 354 9050 10 EBV LMP1 YLLEMLWRL effector memory T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*02:01 B2M MHCI -45 chip0420_390255 9.13 7.36 Chip1 T1D_1 T1D TGTGCCAGCAGCCAAAGCCCGGGTGGTACGCAGTATTTT CASSQSPGGTQYF TRBV14*01 TRBJ2-3*01 6.0 431.0 _CASSQSPGGTQYF 94 8884 EBV-BLMF1 EBV 0.57 2531 NEG 384 8500 8 EBV BLMF1 GLCTLVAML effector memory T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*02:01 B2M MHCI -46 chip0420_42747 10.23 6.65 Chip1 T1D_2 T1D TGTGCCAGCAGCTCGGGACTAGTCGCCCCCGGGGAGCTGTTTTTT CASSSGLVAPGELFF TRBV2*01 TRBJ2-2*01 73.0 3823.0 _CASSSGLVAPGELFF 133 7518 EBV-BLMF1 EBV 0.86 2531 NEG 338 7180 10 EBV BLMF1 GLCTLVAML effector memory T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*02:01 B2M MHCI -47 chip0420_229581 15.86 9.34 Chip1 T1D_2 T1D TGTGCAGCGTATGCAGGCAACATGCTCACCTTT CAAYAGNMLTF TRAV29/DV5*01 TRAJ39*01 22.0 2100.0 TGCGCCAGCAGAGCGGGAGCCGGGGATACGCAGTATTTT CASRAGAGDTQYF TRBV10-2*01 TRBJ2-3*01 3.0 80.0 CAAYAGNMLTF_CASRAGAGDTQYF 18 3120 EBV-BLMF1 EBV 0.78 2531 NEG 305 2815 12 EBV BLMF1 GLCTLVAML effector T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*02:01 B2M MHCI -48 chip0420_883638 5.56 8.66 Chip1 T1D_2 T1D TGTGCCAGCAGTTCCCAGGGCGGCTCGCGAGGCTACACCTTC CASSSQGGSRGYTF TRBV6-5*01 TRBJ1-2*01 69.0 4657.0 _CASSSQGGSRGYTF 1 7893 EBV-LMP2-FLY EBV 0.8 355 EBV-LMP2-FLY 370 7523 6 EBV LMP2 FLYALALLL central memory T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*02:01 B2M MHCI -49 chip0420_624974 15.15 8.5 Chip1 T1D_2 T1D TGTGCTTCCCTAACCCCGGGGGCTTCCAAGATAATCTTT CASLTPGASKIIF TRAV8-6*01 TRAJ3*01 29.0 2334.0 TGTGCCAGCAGCTCGGGACTAGTCGCCCCCGGGGAGCTGTTTTTT CASSSGLVAPGELFF TRBV2*01 TRBJ2-2*01 113.0 6638.0 CASLTPGASKIIF_CASSSGLVAPGELFF 38 3473 EBV-BLMF1 EBV 0.57 2531 NEG 317 3156 12 EBV BLMF1 GLCTLVAML effector T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*02:01 B2M MHCI -50 chip0420_802401 15.81 9.48 Chip1 T1D_2 T1D TGTGCCGTGAAGGACACCGACAAGCTCATCTTT CAVKDTDKLIF TRAV8-1*01 TRAJ34*01 12.0 1026.0 TGTGCCAGCAGTTCCCCGCTCGGACTCGCAACAGGATACGAGCAGTACTTC CASSSPLGLATGYEQYF TRBV6-2*01,TRBV6-3*01 TRBJ2-7*01 17.0 821.0 CAVKDTDKLIF_CASSSPLGLATGYEQYF 1 1941 EBV-BRLF1 EBV 0.88 1264 NEG 311 1630 12 EBV BRLF1 YVLDHLIVV effector T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*02:01 B2M MHCI -51 chip0420_821597 11.4 6.73 Chip1 T1D_2 T1D TGTGTGGTGAACGGGAAGGATAGCAGCCATAAATTGATCTTC CVVNGKDSSHKLIF TRAV12-1*01 TRAJ12*01 1.0 23.0 TGTGCCAGCAGTGGAGGGGCGGTCGCGCCGAGTGAGCAGTTCTTC CASSGGAVAPSEQFF TRBV2*01 TRBJ2-1*01 75.0 5507.0 CVVNGKDSSHKLIF_CASSGGAVAPSEQFF 1 3959 EBV-BLMF1 EBV 0.67 2531 NEG 339 3620 10 EBV BLMF1 GLCTLVAML effector memory T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*02:01 B2M MHCI -52 chip0420_76586 13.6 6.74 Chip1 T1D_2 T1D TGTGTGGTGAACGGCAGGGATAGCAGCTATAAATTGATCTTC CVVNGRDSSYKLIF TRAV12-1*01 TRAJ12*01 72.0 3498.0 TGTGCCAGCAGCTCGGGACTAGTCGCCCCCGGGGAGCTGTTTTTT CASSSGLVAPGELFF TRBV2*01 TRBJ2-2*01 64.0 3891.0 CVVNGRDSSYKLIF_CASSSGLVAPGELFF 98 4925 EBV-BLMF1 EBV 0.55 2531 NEG 363 4562 10 EBV BLMF1 GLCTLVAML effector memory T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*02:01 B2M MHCI -53 chip0420_353194 5.49 8.92 Chip1 T1D_1 T1D TGTGCTCCGGCCGGGGGCTCCGCCTACAGCACCCTCACCTTT CAPAGGSAYSTLTF TRAV17*01 TRAJ11*01 30.0 2021.0 TGTGCCAGCAGTGTGCAGGGAGGTAACTATGGCTACACCTTC CASSVQGGNYGYTF TRBV6-1*01 TRBJ1-2*01 2.0 93.0 CAPAGGSAYSTLTF_CASSVQGGNYGYTF 1 5917 EBV-LMP2-FLY EBV 0.86 355 NEG 307 5610 6 EBV LMP2 FLYALALLL central memory T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*02:01 B2M MHCI -54 chip0420_432384 8.71 7.59 Chip1 T1D_2 T1D TGTGCCGTGTTGAGCGGTGACATGCGCTTT CAVLSGDMRF TRAV12-2*01 TRAJ43*01 19.0 1698.0 TGTGCCAGCAGTGATGGACTGCTGAGCTCCTACAATGAGCAGTTCTTC CASSDGLLSSYNEQFF TRBV9*01 TRBJ2-1*01 59.0 4459.0 CAVLSGDMRF_CASSDGLLSSYNEQFF 1 5853 PGT-178 PGT 0.62 1480 NEG 300 5553 8 HomoSapiens PGT LLAGIGTVPI effector memory T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*02:01 B2M MHCI -55 chip0420_20382 11.58 6.45 Chip1 T1D_2 T1D TGCGCCAGCAGGATGGGGGCCGGGGATACGCAGTATTTT CASRMGAGDTQYF TRBV10-2*01 TRBJ2-3*01 28.0 2000.0 _CASRMGAGDTQYF 90 5079 EBV-BLMF1 EBV 0.43 2531 NEG 341 4738 10 EBV BLMF1 GLCTLVAML effector memory T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*02:01 B2M MHCI -56 chip0420_635308 14.1 7.44 Chip1 T1D_2 T1D TGTGCCAGCGGCACTCTAGCGGGGGCTGGGCAGACCCAGTACTTC CASGTLAGAGQTQYF TRBV3-1*01 TRBJ2-5*01 30.0 1532.0 _CASGTLAGAGQTQYF 5 3236 EBV-BRLF1 EBV 0.89 1264 EBV-BRLF1 296 2940 10 EBV BRLF1 YVLDHLIVV effector memory T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*02:01 B2M MHCI -57 chip0420_736151 14.35 8.59 Chip1 T1D_1 T1D TGTGCCAGCAGCACGGGACAGCTATCGAACACCGGGGAGCTGTTTTTT CASSTGQLSNTGELFF TRBV9*01 TRBJ2-2*01 85.0 4555.0 _CASSTGQLSNTGELFF 82 1942 EBV-BLMF1 EBV 0.75 2531 NEG 332 1610 12 EBV BLMF1 GLCTLVAML effector T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*02:01 B2M MHCI -58 chip0420_305254 8.75 7.9 Chip1 T1D_2 T1D TGTGCAGAGAGTTACGACGGGTATGCGCTCAACTTC CAESYDGYALNF TRAV5*01 TRAJ41*01 31.0 2154.0 TGCGCCAGCAGTCAATCGAGAGGGTCGCTCTGGGATACGCAGTATTTT CASSQSRGSLWDTQYF TRBV4-3*01 TRBJ2-3*01 53.0 3152.0 CAESYDGYALNF_CASSQSRGSLWDTQYF 1 6319 EBV-BRLF1 EBV 0.78 1264 EBV-BRLF1 299 6020 8 EBV BRLF1 YVLDHLIVV effector memory T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*02:01 B2M MHCI -59 chip0420_554677 14.68 8.08 Chip1 tet_neg TGCAGCGTTGGGGGCAGCTTCTATGGCTACACCTTC CSVGGSFYGYTF TRBV29-1*01 TRBJ1-2*01 92.0 7353.0 _CSVGGSFYGYTF 42 2388 EBV-BLMF1 EBV 0.8 2531 NEG 322 2066 10 EBV BLMF1 GLCTLVAML effector memory T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*02:01 B2M MHCI -60 chip0420_182823 11.95 6.29 Chip1 T1D_2 T1D TGTGCAGAGAGTACTTCGGGAGGAAAGCTTATCTTC CAESTSGGKLIF TRAV5*01 TRAJ23*01 26.0 2108.0 TGCAGCGTGGGGACAGGGGGAACTAATGAAAAACTGTTTTTT CSVGTGGTNEKLFF TRBV29-1*01 TRBJ1-4*01 157.0 6925.0 CAESTSGGKLIF_CSVGTGGTNEKLFF 107 3729 EBV-BLMF1 EBV 0.62 2531 NEG 312 3417 10 EBV BLMF1 GLCTLVAML effector memory T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*02:01 B2M MHCI -61 chip0420_846329 13.1 6.45 Chip1 T1D_1 T1D TGTGCAGAGGCGGCCAACCAGGCAGGAACTGCTCTGATCTTT CAEAANQAGTALIF TRAV5*01 TRAJ15*01 39.0 2252.0 TGTGCCAGCAGCCAAAGCCCGGGTGGTACGCAGTATTTT CASSQSPGGTQYF TRBV14*01 TRBJ2-3*01 30.0 1285.0 CAEAANQAGTALIF_CASSQSPGGTQYF 9 4436 EBV-BLMF1 EBV 0.88 2531 NEG 327 4109 10 EBV BLMF1 GLCTLVAML effector memory T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*02:01 B2M MHCI -62 chip0420_766797 8.93 7.61 Chip1 T1D_1 T1D TGCAGCGTCGGCTCCAGGGGAACTAATGAAAAACTGTTTTTT CSVGSRGTNEKLFF TRBV29-1*01 TRBJ1-4*01 172.0 7568.0 _CSVGSRGTNEKLFF 283 7231 EBV-BLMF1 EBV 0.59 2531 NEG 338 6893 8 EBV BLMF1 GLCTLVAML effector memory T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*02:01 B2M MHCI -63 chip0420_468825 15.42 8.79 Chip1 T1D_2 T1D TGTGCCAGCAGCTCGGGACTAGTCGCCCCCGGGGAGCTGTTTTTT CASSSGLVAPGELFF TRBV2*01 TRBJ2-2*01 75.0 3049.0 _CASSSGLVAPGELFF 133 3083 EBV-BLMF1 EBV 0.64 2531 NEG 300 2783 12 EBV BLMF1 GLCTLVAML effector T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*02:01 B2M MHCI -64 chip0420_244939 9.84 7.04 Chip1 T1D_2 T1D TGCAGCGTGGGGACAGGGGGAACTAATGAAAAACTGTTTTTT CSVGTGGTNEKLFF TRBV29-1*01 TRBJ1-4*01 64.0 3144.0 _CSVGTGGTNEKLFF 638 8040 EBV-BLMF1 EBV 0.44 2531 NEG 331 7709 10 EBV BLMF1 GLCTLVAML effector memory T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*02:01 B2M MHCI -65 chip0420_865643 5.49 8.59 Chip1 T1D_2 T1D TGTGCCAGCAGTTTATACTACAATGAGCAGTTCTTC CASSLYYNEQFF TRBV12-3*01,TRBV12-4*01 TRBJ2-1*01 33.0 2289.0 _CASSLYYNEQFF 4 4632 EBV-LMP1-1 EBV 0.79 237 EBV-LMP1-1 289 4343 6 EBV LMP1 YLLEMLWRL central memory T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*02:01 B2M MHCI -66 chip0420_621741 12.82 6.26 Chip1 T1D_1 T1D TGCAGCACCCAAGAGGGGGGGTATGGCTACACCTTC CSTQEGGYGYTF TRBV29-1*01 TRBJ1-2*01 92.0 6417.0 _CSTQEGGYGYTF 4 6304 EBV-BLMF1 EBV 0.62 2531 NEG 352 5952 10 EBV BLMF1 GLCTLVAML effector memory T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*02:01 B2M MHCI -67 chip0420_301982 5.44 8.78 Chip1 T1D_1 T1D TGTGCCAGCAGCCCGGGGGACGCCCGTGGCGAGCAGTACTTC CASSPGDARGEQYF TRBV5-6*01 TRBJ2-7*01 10.0 408.0 _CASSPGDARGEQYF 12 6126 EBV-LMP1-1 EBV 0.86 237 EBV-LMP1-1 366 5760 6 EBV LMP1 YLLEMLWRL central memory T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*02:01 B2M MHCI -68 chip0420_220371 10.08 7.19 Chip1 T1D_2 T1D TGTGCCAGCACCCCCGATATTAACACTGAAGCTTTCTTT CASTPDINTEAFF TRBV6-1*01 TRBJ1-1*01 33.0 1410.0 _CASTPDINTEAFF 4 3622 EBV-BLMF1 EBV 0.82 2531 NEG 302 3320 10 EBV BLMF1 GLCTLVAML effector memory T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*02:01 B2M MHCI -69 chip0420_537523 12.35 6.43 Chip1 T1D_1 T1D _ 6746 3432 EBV-BLMF1 EBV 0.9 2531 EBV-BLMF1 308 3124 10 EBV BLMF1 GLCTLVAML effector memory T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*02:01 B2M MHCI -70 chip0420_369958 12.86 6.44 Chip1 T1D_1 T1D TGCAGTGCTAGAGACGGGACAGGGAATGGCTACACCTTC CSARDGTGNGYTF TRBV20-1*01 TRBJ1-2*01 2.0 185.0 _CSARDGTGNGYTF 14 4480 EBV-BLMF1 EBV 0.88 2531 EBV-BLMF1 297 4183 10 EBV BLMF1 GLCTLVAML effector memory T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*02:01 B2M MHCI -71 chip0420_39763 7.97 9.56 Chip1 T1D_2 T1D TGTGCAGAGAAGGCCTGGGGGTTACCAGAAAGTTACCTTT CAEKAWgg??gtYQKVTF TRAV5*01 TRAJ13*01 1.0 28.0 CAEKAWgg??gtYQKVTF_ 3 7923 EBV-BLMF1 EBV 0.74 2531 EBV-BLMF1 300 7623 8 EBV BLMF1 GLCTLVAML effector memory T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*02:01 B2M MHCI -72 chip0420_37184 12.04 6.6 Chip1 T1D_2 T1D TGTGCAGCATACGCAGGCAACATGCTCACCTTT CAAYAGNMLTF TRAV29/DV5*01 TRAJ39*01 48.0 4016.0 TGCGCCAGCAGGATGGGGGCCGGGGATACGCAGTATTTT CASRMGAGDTQYF TRBV10-2*01 TRBJ2-3*01 27.0 1284.0 CAAYAGNMLTF_CASRMGAGDTQYF 21 4264 EBV-BLMF1 EBV 1.0 2531 NEG 344 3920 10 EBV BLMF1 GLCTLVAML effector memory T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*02:01 B2M MHCI -73 chip0420_360625 13.88 8.42 Chip1 T1D_2 T1D TGTGCAGCATACGCAGGCAACATGCTCCCCTTT CAAYAGNMLPF TRAV29/DV5*01 TRAJ39*01 2.0 115.0 TGCGCCAGCAGGATGGGGGCCGGGGATACGCAGTATTTT CASRMGAGDTQYF TRBV10-2*01 TRBJ2-3*01 35.0 1691.0 CAAYAGNMLPF_CASRMGAGDTQYF 2 3739 EBV-BLMF1 EBV 0.58 2531 NEG 309 3430 10 EBV BLMF1 GLCTLVAML effector memory T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*02:01 B2M MHCI -74 chip0420_115189 12.4 6.17 Chip1 T1D_2 T1D TGTGCCAGCAGTCCCCAAGGGGGGGCCAGTGAAGCTTTCTTT CASSPQGGASEAFF TRBV6-1*01 TRBJ1-1*01 4.0 102.0 _CASSPQGGASEAFF 3 4847 EBV-LMP2-FLY EBV 0.83 355 NEG 306 4541 10 EBV LMP2 FLYALALLL effector memory T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*02:01 B2M MHCI -75 chip0420_178662 9.92 7.38 Chip1 T1D_2 T1D TGTGCCAGCAGCTCGGGACTAGTCGCCCCCGGGGAGCTGTTTTTT CASSSGLVAPGELFF TRBV2*01 TRBJ2-2*01 13.0 943.0 _CASSSGLVAPGELFF 133 5305 EBV-BLMF1 EBV 0.83 2531 NEG 311 4994 10 EBV BLMF1 GLCTLVAML effector memory T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*02:01 B2M MHCI -76 chip0420_35398 8.55 9.18 Chip1 T1D_2 T1D TGTGCAGAGAGTACTTCGGGAGGAAAGCTTATCTTC CAESTSGGKLIF TRAV5*01 TRAJ23*01 1.0 59.0 TGCAGCGTGGGGACAGGGGGAACTAATGAAAAACTGTTTTTT CSVGTGGTNEKLFF TRBV29-1*01 TRBJ1-4*01 74.0 3184.0 CAESTSGGKLIF_CSVGTGGTNEKLFF 107 6107 EBV-BLMF1 EBV 0.75 2531 NEG 299 5808 8 EBV BLMF1 GLCTLVAML effector memory T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*02:01 B2M MHCI -77 chip0420_204556 8.36 7.85 Chip1 T1D_1 T1D TGTGCCGTGCCTGGGTTTTCTGGTGGCTACAATAAGCTGATTTTT CAVPGFSGGYNKLIF TRAV8-1*01 TRAJ4*01 52.0 2166.0 TGTGCCAGCAGCACGGGACAGCTATCGAACACCGGGGAGCTGTTTTTT CASSTGQLSNTGELFF TRBV9*01 TRBJ2-2*01 28.0 1244.0 CAVPGFSGGYNKLIF_CASSTGQLSNTGELFF 1 10032 EBV-LMP1-1 EBV 0.62 237 EBV-LMP1-1 305 9727 8 EBV LMP1 YLLEMLWRL effector memory T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*02:01 B2M MHCI -78 chip0420_414573 11.61 6.14 Chip1 T1D_2 T1D TGTGCAATGAGAGAGGGCACGGGCAACTTCAACAAATTTTACTTT CAMREGTGNFNKFYF TRAV14/DV4*01 TRAJ21*01 18.0 1097.0 TGTGCCAGCAAGGGGATCGATGGCTACACCTTC CASKGIDGYTF TRBV13*01 TRBJ1-2*01 48.0 3198.0 CAMREGTGNFNKFYF_CASKGIDGYTF 6 5213 EBV-BRLF1 EBV 0.94 1264 EBV-BRLF1 309 4904 10 EBV BRLF1 YVLDHLIVV effector memory T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*02:01 B2M MHCI -79 chip0420_657003 6.88 10.29 Chip1 T1D_1 T1D TGTGCCAGTAGTATTGGGTCTGGTGAGCAGTTCTTC CASSIGSGEQFF TRBV19*01 TRBJ2-1*01 29.0 2351.0 _CASSIGSGEQFF 2 11158 M1 FLU 0.65 1250 M1 304 10854 7 InfluenzaA M1 GILGFVFTL transitional T cells between effector and memory populations PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*02:01 B2M MHCI -80 chip0420_839713 13.14 8.23 Chip1 T1D_2 T1D TGTGCAGAGATAAAGGCAGGCAACATGCTCACCTTT CAEIKAGNMLTF TRAV13-2*01 TRAJ39*01 22.0 2051.0 TGTGCCTGGAGAGGGGAACCCTCCTACAATGAGCAGTTCTTC CAWRGEPSYNEQFF TRBV30*01 TRBJ2-1*01 19.0 1217.0 CAEIKAGNMLTF_CAWRGEPSYNEQFF 1 2493 EBV-BRLF1 EBV 0.94 1264 EBV-BRLF1 291 2202 10 EBV BRLF1 YVLDHLIVV effector memory T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*02:01 B2M MHCI -81 chip0420_250185 5.42 8.78 Chip1 T1D_2 T1D TGTGCCAGCAGCCGACAGGGAGGGAAGGATGGCTACACCTTC CASSRQGGKDGYTF TRBV6-1*01 TRBJ1-2*01 80.0 2224.0 _CASSRQGGKDGYTF 5 3612 EBV-LMP2-FLY EBV 0.88 355 EBV-LMP2-FLY 312 3300 6 EBV LMP2 FLYALALLL central memory T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*02:01 B2M MHCI -82 chip0420_464751 14.84 9.76 Chip1 T1D_1 T1D TGCATCCGAGACGCTATGGCGGAAGCCAAGGAAATCTCATCTTT CIRDAMAg?aSQGNLIF TRAV26-2*01 TRAJ42*01 79.0 2021.0 TGTGCCAGCAGCCCAGTTAGCGGGTCAACCTACGAGCAATACTTC CASSPVSGSTYEQYF TRBV3-1*01 TRBJ2-7*01 8.0 291.0 CIRDAMAg?aSQGNLIF_CASSPVSGSTYEQYF 1 3596 EBV-BLMF1 EBV 0.58 2531 EBV-BLMF1 285 3311 12 EBV BLMF1 GLCTLVAML effector T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*02:01 B2M MHCI -83 chip0420_302490 14.53 7.85 Chip1 T1D_2 T1D TGTGTGGTGAACGGCAGGGATAGCAGCTATAAATTGATCTTC CVVNGRDSSYKLIF TRAV12-1*01 TRAJ12*01 36.0 1875.0 TGTGCCAGCAGCTCGGGACTAGTCGCCCCCGGGGAGCTGTTTTTT CASSSGLVAPGELFF TRBV2*01 TRBJ2-2*01 83.0 5069.0 CVVNGRDSSYKLIF_CASSSGLVAPGELFF 98 3526 EBV-BLMF1 EBV 0.47 2531 NEG 294 3232 10 EBV BLMF1 GLCTLVAML effector memory T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*02:01 B2M MHCI -84 chip0420_682508 13.07 6.96 Chip1 T1D_2 T1D TGTGCCTTAGGAGGACTGACCTTT CALGGLTF TRAV8-1*01 TRAJ22*01 16.0 2068.0 TGTGCCAGCAGCCCCTCGACTAGCGGGAGTGGGGAGACCCAGTACTTC CASSPSTSGSGETQYF TRBV3-1*01 TRBJ2-5*01 29.0 1723.0 CALGGLTF_CASSPSTSGSGETQYF 12 2142 EBV-BRLF1 EBV 0.97 1264 EBV-BRLF1 301 1841 10 EBV BRLF1 YVLDHLIVV effector memory T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*02:01 B2M MHCI -85 chip0420_179739 8.69 8.69 Chip1 T1D_1 T1D TGCATCCTGAGACGCTATGGAGGAAGCCAAGGAAACCTCATCTTT CILRRYGGSQGNLIF TRAV26-2*01 TRAJ42*01 52.0 2365.0 TGTGCCAGCAGCCCAGTTAGCGGGTCAACCTACGAGCAGTACTTC CASSPVSGSTYEQYF TRBV3-1*01 TRBJ2-7*01 5.0 206.0 CILRRYGGSQGNLIF_CASSPVSGSTYEQYF 8 4386 EBV-BLMF1 EBV 0.82 2531 NEG 268 4118 8 EBV BLMF1 GLCTLVAML effector memory T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*02:01 B2M MHCI -86 chip0420_57680 14.14 7.21 Chip1 T1D_1 T1D TGTGCCGTGAAGGGGTATGACAAGATCATCTTT CAVKGYDKIIF TRAV8-1*01 TRAJ30*01 10.0 657.0 TGTGCCAGCAGTCCGGACCAAACTAGCTCCTACAATGAGCAGTTCTTC CASSPDQTSSYNEQFF TRBV27*01 TRBJ2-1*01 122.0 6860.0 CAVKGYDKIIF_CASSPDQTSSYNEQFF 5 3308 EBV-BRLF1 EBV 0.91 1264 EBV-BRLF1 308 3000 10 EBV BRLF1 YVLDHLIVV effector memory T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*02:01 B2M MHCI -87 chip0420_681521 12.27 6.1 Chip1 T1D_1 T1D TGCAGTGCCATAGATACATCCGGGACAGGGGGCTACGAGCAGTACTTC CSAIDTSGTGGYEQYF TRBV20-1*01 TRBJ2-7*01 77.0 3469.0 _CSAIDTSGTGGYEQYF 5 6536 HCVNS4B-1807-1816 HCV 0.88 74 HCVNS4B-1807-1816 314 6222 10 HCV NS4B LLFNILGGWV effector memory T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*02:01 B2M MHCI -88 chip0420_396921 12.89 6.43 Chip1 T1D_2 T1D TGCAGCGTGGGGACAGGGGGAACTAATGAAAAACTGTTTTTT CSVGTGGTNEKLFF TRBV29-1*01 TRBJ1-4*01 105.0 7232.0 _CSVGTGGTNEKLFF 638 4275 EBV-BLMF1 EBV 0.67 2531 NEG 319 3956 10 EBV BLMF1 GLCTLVAML effector memory T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*02:01 B2M MHCI -89 chip0420_759711 10.67 6.49 Chip1 T1D_2 T1D TGTGTGGCGAACGGCAGGGATAGCAGCTATAAATTGATCTTC CVANGRDSSYKLIF TRAV12-1*01 TRAJ12*01 37.0 2194.0 TGTGCCAGCAGCTCGGGACTAGTCGCCCCCGGGGAGCTGTTTTTT CASSSGLVAPGELFF TRBV2*01 TRBJ2-2*01 52.0 4239.0 CVANGRDSSYKLIF_CASSSGLVAPGELFF 3 7978 EBV-BLMF1 EBV 0.5 2531 NEG 313 7665 10 EBV BLMF1 GLCTLVAML effector memory T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*02:01 B2M MHCI -90 chip0420_447856 9.26 8.66 Chip1 T1D_1 T1D TGTGCTGTGAGTGATTTGGGAATGACATGCGCTTT CAVSDtt?GNDMRF TRAV8-4*01 TRAJ43*01 1.0 19.0 TGCAGCGTCGGCTCCAGGGGAACTAATGAAAAACTGTTTTTT CSVGSRGTNEKLFF TRBV29-1*01 TRBJ1-4*01 235.0 8796.0 CAVSDtt?GNDMRF_CSVGSRGTNEKLFF 6 4059 EBV-BLMF1 EBV 0.56 2531 NEG 313 3746 8 EBV BLMF1 GLCTLVAML effector memory T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*02:01 B2M MHCI -91 chip0420_794965 7.86 7.93 Chip1 T1D_1 T1D TGCGCCAGCAGCCAAGTCATCTCTGGAAACACCATATATTTT CASSQVISGNTIYF TRBV3-1*01 TRBJ1-3*01 1.0 16.0 _CASSQVISGNTIYF 1 9023 PGT-178 PGT 0.46 1480 PGT-178 265 8758 8 HomoSapiens PGT LLAGIGTVPI effector memory T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*02:01 B2M MHCI -92 chip0420_620002 5.68 9.22 Chip1 T1D_2 T1D TGTGCAGCATACGCAGGCAACATGCTCACCTTT CAAYAGNMLTF TRAV29/DV5*01 TRAJ39*01 1.0 10.0 TGTGCTGTGGGGGAGGGAAGGCTTT CAVG??gREGF TRAV2*01 TRAJ11*01 4.0 154.0 0.8 TGCGCCAACAGGATGGGGGCCGGGGATACGCAGTATTTT CANRMGAGDTQYF TRBV10-2*01 TRBJ2-3*01 48.0 3343.0 CAAYAGNMLTF_CANRMGAGDTQYF 2 3799 EBV-BLMF1 EBV 0.8 2531 NEG 289 3510 6 EBV BLMF1 GLCTLVAML central memory T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*02:01 B2M MHCI -93 chip0420_732805 15.43 9.24 Chip1 T1D_2 T1D TGTGCTGTCATGAACACAGGCTTTCAGAAACTTGTATTT CAVMNTGFQKLVF TRAV8-3*01 TRAJ8*01 1.0 97.0 CAVMNTGFQKLVF_ 2 3525 EBV-BRLF1 EBV 0.93 1264 EBV-BRLF1 304 3221 12 EBV BRLF1 YVLDHLIVV effector T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*02:01 B2M MHCI -94 chip0420_509465 14.07 8.87 Chip1 T1D_2 T1D TGCAGCGTTGACCAAAGGACAGGGCAAAAGAAGAACTATGGCTACACCTTC CSVDQRTGQKKNYGYTF TRBV29-1*01 TRBJ1-2*01 245.0 10678.0 _CSVDQRTGQKKNYGYTF 40 2332 EBV-BLMF1 EBV 1.0 2531 NEG 273 2059 12 EBV BLMF1 GLCTLVAML effector T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*02:01 B2M MHCI -95 chip0420_153576 15.98 9.72 Chip1 T1D_2 T1D TGTGCAATGAGAGAGGGCCCGGGCAACTTCAACAAATTTTACTTT CAMREGPGNFNKFYF TRAV14/DV4*01 TRAJ21*01 102.0 4469.0 TGTGCCAGCAAGGGGATCGATGGCTACACCTTC CASKGIDGYTF TRBV13*01 TRBJ1-2*01 44.0 3699.0 CAMREGPGNFNKFYF_CASKGIDGYTF 1 2262 EBV-BRLF1 EBV 0.74 1264 EBV-BRLF1 274 1988 12 EBV BRLF1 YVLDHLIVV effector T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*02:01 B2M MHCI -96 chip0420_209192 5.4 8.83 Chip1 T1D_2 T1D TGTGCCAGCAGTTTGATGCGTTCCTACAATGAGCAGTTCTTC CASSLMRSYNEQFF TRBV27*01 TRBJ2-1*01 17.0 1008.0 _CASSLMRSYNEQFF 1 4125 ZNT8-115-123 ZNT8 1.0 74 ZNT8-115-123 266 3859 6 HomoSapiens ZNT8 LLSLFSLWL central memory T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*02:01 B2M MHCI -97 chip0420_117825 12.6 7.5 Chip1 T1D_2 T1D TGTGCCTGGAGTGGCTCCGGGACTAGCGGGATTATGTACAATGAGCAGTTCTTC CAWSGSGTSGIMYNEQFF TRBV30*01 TRBJ2-1*01 13.0 443.0 _CAWSGSGTSGIMYNEQFF 1 3354 EBV-BRLF1 EBV 0.92 1264 EBV-BRLF1 303 3051 10 EBV BRLF1 YVLDHLIVV effector memory T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*02:01 B2M MHCI -98 chip0420_309865 13.14 7.04 Chip1 T1D_2 T1D TGCGCCAGCAGAGCGGGAGCCGGGGATACGCAGTATTTT CASRAGAGDTQYF TRBV10-2*01 TRBJ2-3*01 26.0 2180.0 _CASRAGAGDTQYF 59 2454 EBV-BLMF1 EBV 1.0 2531 NEG 324 2130 10 EBV BLMF1 GLCTLVAML effector memory T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*02:01 B2M MHCI -99 chip0420_370780 0.24 4.2 Chip1 T1D_1 T1D TGTGCCAGCAGCCCCGGGCTGAGACCTGAAGCTTTCTTT CASSPGLRPEAFF TRBV12-3*01,TRBV12-4*01 TRBJ1-1*01 13.0 886.0 _CASSPGLRPEAFF 1 7165 HCV-K1YI7V HCV 0.5 3 NEG 244 6921 5 HCV POL YLVALGVNAV natural killer-like T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*02:01 B2M MHCI -100 chip0420_776832 12.2 7.21 Chip1 T1D_2 T1D TGCAGTGCTAGGGACCGGACAGGAAATGGCTACACCTTC CSARDRTGNGYTF TRBV20-1*01 TRBJ1-2*01 32.0 2263.0 _CSARDRTGNGYTF 7 3348 EBV-BLMF1 EBV 0.69 2531 NEG 305 3043 10 EBV BLMF1 GLCTLVAML effector memory T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*02:01 B2M MHCI -101 chip0420_30947 14.08 7.06 Chip1 T1D_1 T1D TGTGCAATGAGTATATCTAACTTTGGAAATGAGAAATTAACCTTT CAMSISNFGNEKLTF TRAV12-3*01 TRAJ48*01 8.0 203.0 TGTGCCAGCAGTTCCGGAGGGAACGTGGATACGCAGTATTTT CASSSGGNVDTQYF TRBV7-3*01 TRBJ2-3*01 14.0 714.0 CAMSISNFGNEKLTF_CASSSGGNVDTQYF 1 2894 EBV-BLMF1 EBV 0.67 2531 NEG 310 2584 10 EBV BLMF1 GLCTLVAML effector memory T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*02:01 B2M MHCI -102 chip0420_643591 13.4 8.38 Chip1 T1D_2 T1D TGCAGCGTTGACCAAAGGACAGGGCAAAAGAAGAACTATGGCTACACCTTC CSVDQRTGQKKNYGYTF TRBV29-1*01 TRBJ1-2*01 143.0 6222.0 _CSVDQRTGQKKNYGYTF 40 2474 EBV-BLMF1 EBV 0.6 2531 NEG 293 2181 10 EBV BLMF1 GLCTLVAML effector memory T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*02:01 B2M MHCI -103 chip0420_118314 14.64 8.21 Chip1 T1D_2 T1D _ 6746 2096 EBV-BRLF1 EBV 0.94 1264 EBV-BRLF1 253 1843 12 EBV BRLF1 YVLDHLIVV effector T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*02:01 B2M MHCI -104 chip0420_176826 13.43 6.91 Chip1 T1D_2 T1D TGTGCAGAGAGTACTTCGGGAGGAAAGCTTATCTTC CAESTSGGKLIF TRAV5*01 TRAJ23*01 26.0 2174.0 TGCAGCGTGGGGACAGGGGGAACTAATGAAAAACTGTTTTTT CSVGTGGTNEKLFF TRBV29-1*01 TRBJ1-4*01 178.0 8057.0 CAESTSGGKLIF_CSVGTGGTNEKLFF 107 4200 EBV-BLMF1 EBV 0.5 2531 NEG 291 3909 10 EBV BLMF1 GLCTLVAML effector memory T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*02:01 B2M MHCI -105 chip0420_327412 8.19 9.36 Chip1 T1D_2 T1D TGTGCAGAGAGTACTTCGGGAGGAAAGCTTATCTTC CAESTSGGKLIF TRAV5*01 TRAJ23*01 25.0 2033.0 TGCAGCGTGGGGACAGGGGGAACTAATGAAAAACTGTTTTTT CSVGTGGTNEKLFF TRBV29-1*01 TRBJ1-4*01 169.0 8276.0 CAESTSGGKLIF_CSVGTGGTNEKLFF 107 7022 EBV-BLMF1 EBV 0.47 2531 NEG 287 6735 8 EBV BLMF1 GLCTLVAML effector memory T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*02:01 B2M MHCI -106 chip0420_815130 11.67 6.22 Chip1 T1D_2 T1D TGTGCCTTAGGAGGACTGACCTTT CALGGLTF TRAV8-1*01 TRAJ22*01 43.0 4312.0 TGTGCCAGCAGCCCCTCGACTAGCCGGAGTGGGGAGACCCAGTACTTC CASSPSTSRSGETQYF TRBV3-1*01 TRBJ2-5*01 10.0 606.0 CALGGLTF_CASSPSTSRSGETQYF 1 4919 EBV-BRLF1 EBV 0.95 1264 EBV-BRLF1 277 4642 10 EBV BRLF1 YVLDHLIVV effector memory T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*02:01 B2M MHCI -107 chip0420_679355 14.1 10.13 Chip1 T1D_2 T1D TGCAGCGTGGGGACAGGGGGAACTAATGAAAAACTGTTTTTT CSVGTGGTNEKLFF TRBV29-1*01 TRBJ1-4*01 136.0 7722.0 _CSVGTGGTNEKLFF 638 3418 EBV-BLMF1 EBV 0.71 2531 NEG 240 3178 12 EBV BLMF1 GLCTLVAML effector T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*02:01 B2M MHCI -108 chip0420_48089 10.42 6.97 Chip1 T1D_1 T1D TGCAGCGTCGGCTCCAGGGGAACTAATGAAAAACTGTTTTTT CSVGSRGTNEKLFF TRBV29-1*01 TRBJ1-4*01 26.0 1752.0 _CSVGSRGTNEKLFF 283 4485 EBV-BLMF1 EBV 0.83 2531 NEG 260 4225 10 EBV BLMF1 GLCTLVAML effector memory T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*02:01 B2M MHCI -109 chip0420_469053 13.19 7.52 Chip1 T1D_2 T1D TGTGCCTTAGGAGGACTGACCTTT CALGGLTF TRAV8-1*01 TRAJ22*01 2.0 44.0 TGTGCCAGCAGCCCCTCGACTAGCGGGAGTGGGGAGACCCAGTACTTC CASSPSTSGSGETQYF TRBV3-1*01 TRBJ2-5*01 52.0 1982.0 CALGGLTF_CASSPSTSGSGETQYF 12 3214 EBV-BRLF1 EBV 0.93 1264 NEG 301 2913 10 EBV BRLF1 YVLDHLIVV effector memory T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*02:01 B2M MHCI -110 chip0420_689222 11.37 7.99 Chip1 T1D_1 T1D TGCGGCCCAGAGGAACCTAACGACTACAAGCTCAGCTTT CGPEEPNDYKLSF TRAV30*01 TRAJ20*01 74.0 4308.0 TGTGCCAGCAGCCCGGGACAGCTATCGAACACCGGGGAGCTGTTTTTT CASSPGQLSNTGELFF TRBV9*01 TRBJ2-2*01 31.0 1638.0 CGPEEPNDYKLSF_CASSPGQLSNTGELFF 4 6901 EBV-BLMF1 EBV 0.51 2531 EBV-BLMF1 245 6656 10 EBV BLMF1 GLCTLVAML effector memory T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*02:01 B2M MHCI -111 chip0420_882754 13.25 6.67 Chip1 T1D_2 T1D TGTGCAGCGTATGCAGGCAACATGCTCACCTTT CAAYAGNMLTF TRAV29/DV5*01 TRAJ39*01 9.0 737.0 TGCGCCAGCAGAGCGGGAGCCGGGGATACGCAGTATTTT CASRAGAGDTQYF TRBV10-2*01 TRBJ2-3*01 83.0 5558.0 CAAYAGNMLTF_CASRAGAGDTQYF 18 3926 EBV-BLMF1 EBV 1.0 2531 NEG 321 3605 10 EBV BLMF1 GLCTLVAML effector memory T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*02:01 B2M MHCI -112 chip0420_811728 16.58 11.32 Chip1 T1D_1 T1D TGTGCAGCGAATTATGGAGGAAGCCAAGGAAATCTCATCTTT CAANYGGSQGNLIF TRAV25*01 TRAJ42*01 39.0 2163.0 CAANYGGSQGNLIF_ 3 2589 M1 FLU 0.81 1250 M1 275 2314 12 InfluenzaA M1 GILGFVFTL effector T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*02:01 B2M MHCI -113 chip0420_129504 12.88 6.38 Chip1 T1D_1 T1D TGTGCCGTGAAGGACACCGACAAGCTCATCTTT CAVKDTDKLIF TRAV8-1*01 TRAJ34*01 4.0 510.0 TGTGCCAGTAGTCCCCACTTGGGTGCGGCGGCCGAGCAGTACTTC CASSPHLGAAAEQYF TRBV19*01 TRBJ2-7*01 11.0 376.0 CAVKDTDKLIF_CASSPHLGAAAEQYF 3 4683 EBV-BRLF1 EBV 0.71 1264 EBV-BRLF1 262 4421 10 EBV BRLF1 YVLDHLIVV effector memory T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*02:01 B2M MHCI -114 chip0420_663067 15.33 9.33 Chip1 T1D_2 T1D TGTGTGGTGAACGGCAGGGATAGCAGCTATAAATTGATCTTC CVVNGRDSSYKLIF TRAV12-1*01 TRAJ12*01 1.0 19.0 TGTGCCAGCAGCTCGGGACTAGTCGCCCCCGGGGAGCTGTTTTTT CASSSGLVAPGELFF TRBV2*01 TRBJ2-2*01 77.0 5087.0 CVVNGRDSSYKLIF_CASSSGLVAPGELFF 98 4014 EBV-BLMF1 EBV 0.8 2531 NEG 257 3757 12 EBV BLMF1 GLCTLVAML effector T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*02:01 B2M MHCI -115 chip0420_364532 11.52 6.92 Chip1 T1D_2 T1D TGTGCCGTGAATTCGAAAAACTATCAGTTAATCTGG CAVNSKNYQLIW TRAV12-2*01 TRAJ33*01 9.0 641.0 TGCAGCGACAGAGACGGAGGAAACTATGGCTACACCTTC CSDRDGGNYGYTF TRBV29-1*01 TRBJ1-2*01 104.0 6794.0 CAVNSKNYQLIW_CSDRDGGNYGYTF 2 3042 EBV-BRLF1 EBV 0.92 1264 EBV-BRLF1 270 2772 10 EBV BRLF1 YVLDHLIVV effector memory T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*02:01 B2M MHCI -116 chip0420_176930 8.33 9.09 Chip1 T1D_2 T1D TGCGCCAGCAGAATGGGGGCCGGGGATACGCAGTATTTT CASRMGAGDTQYF TRBV10-2*01 TRBJ2-3*01 5.0 126.0 _CASRMGAGDTQYF 90 5629 EBV-BLMF1 EBV 0.55 2531 NEG 268 5361 8 EBV BLMF1 GLCTLVAML effector memory T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*02:01 B2M MHCI -117 chip0420_28948 15.96 9.39 Chip1 T1D_1 T1D TGCAGCGTCGGCTCCAGGGGAACTAATGAAAAACTGTTTTTT CSVGSRGTNEKLFF TRBV29-1*01 TRBJ1-4*01 215.0 9701.0 _CSVGSRGTNEKLFF 283 2628 EBV-BLMF1 EBV 0.45 2531 NEG 250 2378 12 EBV BLMF1 GLCTLVAML effector T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*02:01 B2M MHCI -118 chip0420_341981 8.46 9.1 Chip1 T1D_2 T1D TGCAGCGTGGGGACAGGGGGAACTAATGAAAAACTGTTTTTT CSVGTGGTNEKLFF TRBV29-1*01 TRBJ1-4*01 118.0 6360.0 _CSVGTGGTNEKLFF 638 6016 EBV-BLMF1 EBV 0.44 2531 NEG 254 5762 8 EBV BLMF1 GLCTLVAML effector memory T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*02:01 B2M MHCI -119 chip0420_661440 -0.08 6.32 Chip1 tet_neg TGTGCCAGCAGTGAATGGCAGGGGAGTAACAATGAGCAGTTCTTC CASSEWQGSNNEQFF TRBV6-4*01 TRBJ2-1*01 35.0 1581.0 _CASSEWQGSNNEQFF 1 8318 IGRP-228-236 IGRP 0.51 16 IGRP-228-236 263 8055 3 HomoSapiens IGRP LNIDLLWSV Naive T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*02:01 B2M MHCI -120 chip0420_83562 12.33 8.12 Chip1 T1D_2 T1D TGTGCCAGCAGTGAAGGCTTTAATACCTACGAGCAGTACTTC CASSEGFNTYEQYF TRBV6-1*01 TRBJ2-7*01 12.0 522.0 _CASSEGFNTYEQYF 4 3834 EBV-BRLF1 EBV 0.91 1264 EBV-BRLF1 291 3543 10 EBV BRLF1 YVLDHLIVV effector memory T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*02:01 B2M MHCI -121 chip0420_172340 14.43 7.87 Chip1 T1D_2 T1D TGCAGCGTGGGGACAGGGGGAACTAATGAAAAACTGTTTTTT CSVGTGGTNEKLFF TRBV29-1*01 TRBJ1-4*01 141.0 6862.0 _CSVGTGGTNEKLFF 638 2678 EBV-BLMF1 EBV 0.78 2531 NEG 238 2440 10 EBV BLMF1 GLCTLVAML effector memory T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*02:01 B2M MHCI -122 chip0420_812878 8.61 8.8 Chip1 T1D_1 T1D TGTGCCCTCTATAACACCGACAAGCTCATCTTT CALYNTDKLIF TRAV9-2*01 TRAJ34*01 19.0 2045.0 TGTGCCAGCAGCCCAGTTAGCGGGTCAACCTACGAGCAGTACTTC CASSPVSGSTYEQYF TRBV3-1*01 TRBJ2-7*01 1.0 30.0 CALYNTDKLIF_CASSPVSGSTYEQYF 15 8249 EBV-BLMF1 EBV 0.73 2531 EBV-BLMF1 304 7945 8 EBV BLMF1 GLCTLVAML effector memory T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*02:01 B2M MHCI -123 chip0420_869186 13.66 6.89 Chip1 T1D_2 T1D TGTGCAGCGTATGCAGGCAACATGCTCACCTTT CAAYAGNMLTF TRAV29/DV5*01 TRAJ39*01 3.0 92.0 TGCGCCAGCAGAGCGGGAGCCGGGGATTCGCAGTATTTT CASRAGAGDSQYF TRBV10-2*01 TRBJ2-3*01 4.0 175.0 CAAYAGNMLTF_CASRAGAGDSQYF 1 4106 EBV-BLMF1 EBV 0.5 2531 NEG 272 3834 10 EBV BLMF1 GLCTLVAML effector memory T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*02:01 B2M MHCI -124 chip0420_274519 14.49 7.83 Chip1 T1D_2 T1D AGTGCACCGAAGGGCGGCATCGAGCTCACGGTT SAPKGGIELTV TRAV29/DV5*01 TRAJ39*01 9.0 1568.0 TGCGCCAGCAGAGCGGGAGCCGGGGATACGCAGTATTTT CASRAGAGDTQYF TRBV10-2*01 TRBJ2-3*01 63.0 4034.0 SAPKGGIELTV_CASRAGAGDTQYF 1 3181 EBV-BLMF1 EBV 0.64 2531 NEG 304 2877 10 EBV BLMF1 GLCTLVAML effector memory T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*02:01 B2M MHCI -125 chip0420_43221 12.6 6.81 Chip1 T1D_2 T1D TGCGCCAGCAGGATGGGGGCCGGGGATACGCAGTATTTT CASRMGAGDTQYF TRBV10-2*01 TRBJ2-3*01 32.0 2242.0 _CASRMGAGDTQYF 90 3120 EBV-BLMF1 EBV 1.0 2531 NEG 267 2853 10 EBV BLMF1 GLCTLVAML effector memory T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*02:01 B2M MHCI -126 chip0420_100066 5.09 9.99 Chip1 T1D_2 T1D _ 6746 3756 MART1-ALA MART1 0.44 269 NEG 264 3492 6 HomoSapiens MART1 ALAGIGILTV central memory T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*02:01 B2M MHCI -127 chip0420_803892 9.5 10.32 Chip1 T1D_2 T1D TGTGCCGTGCACGACACCGACAAGCTCATCTTT CAVHDTDKLIF TRAV8-1*01 TRAJ34*01 28.0 2104.0 TGCAGCGTGGGGACAGGGGGAACTAATGAAAAACTGTTTTTT CSVGTGGTNEKLFF TRBV29-1*01 TRBJ1-4*01 120.0 5416.0 CAVHDTDKLIF_CSVGTGGTNEKLFF 1 3598 EBV-BRLF1 EBV 0.88 1264 EBV-BRLF1 294 3304 9 EBV BRLF1 YVLDHLIVV effector memory T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*02:01 B2M MHCI -128 chip0420_781335 9.92 7.05 Chip1 T1D_2 T1D TGTGCCACCAGTGATTGGCTCGACGGAGATACGCAGTATTTT CATSDWLDGDTQYF TRAV5*01 TRAJ40*01 1.0 10.0 TGCAGCGTGGGGACAGGGGGAACTAATGAAAAACTGTTTTTT CSVGTGGTNEKLFF TRBV29-1*01 TRBJ1-4*01 83.0 4415.0 CATSDWLDGDTQYF_CSVGTGGTNEKLFF 1 5479 EBV-BRLF1 EBV 0.72 1264 EBV-BRLF1 250 5229 10 EBV BRLF1 YVLDHLIVV effector memory T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*02:01 B2M MHCI -129 chip0420_704430 -0.07 6.73 Chip1 T1D_1 T1D TGGGCAGCCAGCCGATCGAACGTTGGAAAGGAGCAATTCACCTTT WAASRSNVGKEQFTF TRAV23/DV6*01 TRAJ48*01 28.0 1853.0 TGTGCCAGCAGCCCCGACCCGACAGGGTTCGGTGAAGCTTTCTTT CASSPDPTGFGEAFF TRBV13*01 TRBJ1-1*01 64.0 2796.0 WAASRSNVGKEQFTF_CASSPDPTGFGEAFF 1 10322 PGT-178 PGT 0.66 1480 PGT-178 251 10071 3 HomoSapiens PGT LLAGIGTVPI Naive T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*02:01 B2M MHCI -130 chip0420_109000 6.99 10.7 Chip1 T1D_1 T1D TATGTGGTCAACGGCAGGGATAGCAGCTATCCATTGATCTTC YVVNGRDSSYPLIF TRAV12-1*01 TRAJ12*01 6.0 241.0 YVVNGRDSSYPLIF_ 1 7559 M1 FLU 0.82 1250 M1 269 7290 7 InfluenzaA M1 GILGFVFTL transitional T cells between effector and memory populations PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*02:01 B2M MHCI -131 chip0420_332864 -0.67 7.09 Chip1 T1D_1 T1D TGCAGCGTTGTATCAGAGCTCGGAGCAGAGACCCAGTACTTC CSVVSELGAETQYF TRBV29-1*01 TRBJ2-5*01 126.0 7329.0 _CSVVSELGAETQYF 1 6118 HCV-K1S HCV 0.6 10 NEG 250 5868 3 HCV POL SLVALGINAV Naive T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*02:01 B2M MHCI -132 chip0420_822902 10.16 6.97 Chip1 T1D_1 T1D TGTGCCGTCTGGGGCTTTCAGAAACTTGTATTT CAVWGFQKLVF TRAV8-1*01 TRAJ8*01 1.0 30.0 TGTGCCAGCAGTTACGGACTAGCGGGCATCAATGAGCAGTTCTTC CASSYGLAGINEQFF TRBV6-2*01,TRBV6-3*01 TRBJ2-1*01 33.0 3028.0 CAVWGFQKLVF_CASSYGLAGINEQFF 1 5291 EBV-BRLF1 EBV 0.48 1264 EBV-BRLF1 264 5027 10 EBV BRLF1 YVLDHLIVV effector memory T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*02:01 B2M MHCI -133 chip0420_505542 14.04 7.23 Chip1 T1D_1 T1D TGTGCAGAGAGTACAAGTGGGGGAAAGCTTATCTTC CAESTSGGKLIF TRAV5*01 TRAJ23*01 25.0 2082.0 TGCAGCGTCGGCTCCAGGGGAACTAATGAAAAACTGTTTTTT CSVGSRGTNEKLFF TRBV29-1*01 TRBJ1-4*01 365.0 18362.0 CAESTSGGKLIF_CSVGSRGTNEKLFF 19 5376 EBV-BLMF1 EBV 0.5 2531 NEG 295 5081 10 EBV BLMF1 GLCTLVAML effector memory T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*02:01 B2M MHCI -134 chip0420_652528 15.06 10.51 Chip1 T1D_2 T1D TGTGCAGAGAGTACTTCGGGAGGAAAGCTTATCTTC CAESTSGGKLIF TRAV5*01 TRAJ23*01 86.0 6360.0 TGCAGCGTGGGGACAGGGGGAACTAATGAAAAACTGTTTTTT CSVGTGGTNEKLFF TRBV29-1*01 TRBJ1-4*01 130.0 6523.0 CAESTSGGKLIF_CSVGTGGTNEKLFF 107 2953 EBV-BLMF1 EBV 0.67 2531 NEG 289 2664 12 EBV BLMF1 GLCTLVAML effector T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*02:01 B2M MHCI -135 chip0420_514007 5.94 13.93 Chip1 T1D_1 T1D TGTGCTGTGAGTGATCGGGATGGCGGCTTCAAAACTATCTTT CAVSDRDGGFKTIF TRAV8-4*01 TRAJ9*01 42.0 2082.0 TGTGCCAGTAGTATAAATGGGGGCCGGAGGGATGGCTACACCTTC CASSINGGRRDGYTF TRBV19*01 TRBJ1-2*01 13.0 288.0 CAVSDRDGGFKTIF_CASSINGGRRDGYTF 5 5572 M1 FLU 0.76 1250 M1 312 5260 7 InfluenzaA M1 GILGFVFTL transitional T cells between effector and memory populations PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*02:01 B2M MHCI -136 chip0420_650550 14.87 9.47 Chip1 T1D_1 T1D TGTGCCGTGAACGGTAACCAGTTCTATTTT CAVNGNQFYF TRAV8-1*01 TRAJ49*01 32.0 4089.0 TGTGCCAGTAGGGCCTTGTTGGGATCCAATCAGCCCCAGCATTTT CASRALLGSNQPQHF TRBV19*01 TRBJ1-5*01 15.0 620.0 CAVNGNQFYF_CASRALLGSNQPQHF 1 3482 EBV-BRLF1 EBV 1.0 1264 EBV-BRLF1 257 3225 12 EBV BRLF1 YVLDHLIVV effector T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*02:01 B2M MHCI -137 chip0420_563720 14.08 7.38 Chip1 T1D_2 T1D TGTGCCCTGAACACCGACAAGCTCATCTTT CALNTDKLIF TRAV8-1*01 TRAJ34*01 2.0 505.0 CALNTDKLIF_ 4 3066 EBV-BRLF1 EBV 0.8 1264 NEG 270 2796 10 EBV BRLF1 YVLDHLIVV effector memory T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*02:01 B2M MHCI -138 chip0420_636970 5.77 8.92 Chip1 T1D_2 T1D TGTGCCAGCAGTTTATACTACAATGAGCAGTTCTTC CASSLYYNEQFF TRBV12-3*01,TRBV12-4*01 TRBJ2-1*01 99.0 6884.0 _CASSLYYNEQFF 4 6407 EBV-LMP1-1 EBV 0.79 237 EBV-LMP1-1 256 6151 6 EBV LMP1 YLLEMLWRL central memory T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*02:01 B2M MHCI -139 chip0420_327898 13.41 8.66 Chip1 T1D_2 T1D TGTGCCAGCAGTTACATGTCCGGCGAAGCTTTCTTT CASSYMSGEAFF TRBV6-2*01,TRBV6-3*01 TRBJ1-1*01 14.0 644.0 _CASSYMSGEAFF 8 2704 EBV-BRLF1 EBV 0.86 1264 EBV-BRLF1 259 2445 10 EBV BRLF1 YVLDHLIVV effector memory T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*02:01 B2M MHCI -140 chip0420_96282 11.77 6.2 Chip1 T1D_2 T1D TGTGTGGTGAACGGCAGGGATAGCAGCTATAAATTGATCTTC CVVNGRDSSYKLIF TRAV12-1*01 TRAJ12*01 61.0 3093.0 TGTGCCAGCAGCTCGGGACTAGTCGCCCCCGAGGAGCTGTTTTTT CASSSGLVAPEELFF TRBV2*01 TRBJ2-2*01 55.0 3780.0 CVVNGRDSSYKLIF_CASSSGLVAPEELFF 1 5964 EBV-BLMF1 EBV 0.78 2531 NEG 280 5684 10 EBV BLMF1 GLCTLVAML effector memory T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*02:01 B2M MHCI -141 chip0420_242043 14.04 7.25 Chip1 T1D_1 T1D _ 6746 3794 EBV-BLMF1 EBV 0.56 2531 NEG 266 3528 10 EBV BLMF1 GLCTLVAML effector memory T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*02:01 B2M MHCI -142 chip0420_350791 10.12 11.3 Chip1 T1D_1 T1D TGTGCAGAGAGTACAAGTGGGGGAAAGCTTATCTTC CAESTSGGKLIF TRAV5*01 TRAJ23*01 23.0 2083.0 TGCAGCGTCGGCTCCAGGGGAACTAATGAAAAACTGTTTTTT CSVGSRGTNEKLFF TRBV29-1*01 TRBJ1-4*01 104.0 5369.0 CAESTSGGKLIF_CSVGSRGTNEKLFF 19 3362 EBV-BLMF1 EBV 0.67 2531 NEG 264 3098 9 EBV BLMF1 GLCTLVAML effector memory T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*02:01 B2M MHCI -143 chip0420_710777 13.81 7.86 Chip1 T1D_2 T1D TGCAGCGTGGGGACAGGGGGAACTAATGAAAAACTGTTTTTT CSVGTGGTNEKLFF TRBV29-1*01 TRBJ1-4*01 73.0 3022.0 _CSVGTGGTNEKLFF 638 2752 EBV-BLMF1 EBV 0.45 2531 NEG 238 2514 10 EBV BLMF1 GLCTLVAML effector memory T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*02:01 B2M MHCI -144 chip0420_683062 13.96 7.14 Chip1 T1D_2 T1D TGTGCAGAGAGTACTTCGGGAGGAAAGCTTATCTTC CAESTSGGKLIF TRAV5*01 TRAJ23*01 1.0 36.0 TGTGCAGAGAAGGCCTGGGGGTTACCAGAAAGTTACCTTT CAEKAWgg??gtYQKVTF TRAV5*01 TRAJ13*01 1.0 12.0 0.5 TGCAGCGTGGGGACAGGGGGAACTAATGAAAAACTGTTTTTT CSVGTGGTNEKLFF TRBV29-1*01 TRBJ1-4*01 256.0 11777.0 CAESTSGGKLIF_CSVGTGGTNEKLFF 107 3112 EBV-BLMF1 EBV 0.5 2531 NEG 276 2836 10 EBV BLMF1 GLCTLVAML effector memory T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*02:01 B2M MHCI -145 chip0420_714023 11.84 6.16 Chip1 T1D_2 T1D TGTGCCGTGAAGGACACCGACAAGCTCATCTTT CAVKDTDKLIF TRAV8-1*01 TRAJ34*01 19.0 2027.0 TGTGCCAGCAGTTCACCGGGACAGTTATACGAGCAGTACCTC CASSSPGQLYEQYL TRBV27*01 TRBJ2-7*01 44.0 2929.0 CAVKDTDKLIF_CASSSPGQLYEQYL 1 5384 EBV-BRLF1 EBV 0.65 1264 EBV-BRLF1 303 5081 10 EBV BRLF1 YVLDHLIVV effector memory T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*02:01 B2M MHCI -146 chip0420_453001 8.66 8.33 Chip1 tet_neg TGCAGCGACAGAGACGGAGGAAACTATGGCTACACCTTC CSDRDGGNYGYTF TRBV29-1*01 TRBJ1-2*01 2.0 82.0 _CSDRDGGNYGYTF 7 6531 EBV-BRLF1 EBV 0.67 1264 NEG 269 6262 8 EBV BRLF1 YVLDHLIVV effector memory T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*02:01 B2M MHCI -147 chip0420_722953 5.82 12.64 Chip1 T1D_1 T1D TGCGCCAGCAGCCAAGATAGTAGCGGGGGGTTTACCTACGAGCAGTACTTC CASSQDSSGGFTYEQYF TRBV4-1*01 TRBJ2-7*01 20.0 1355.0 _CASSQDSSGGFTYEQYF 2 6097 M1 FLU 0.83 1250 M1 248 5849 7 InfluenzaA M1 GILGFVFTL transitional T cells between effector and memory populations PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*02:01 B2M MHCI -148 chip0420_594392 12.25 6.33 Chip1 T1D_2 T1D TGCGCCAGCAGCTTGGAGGGTCAGGCCAGCTCCTACGAGCAGTACTTC CASSLEGQASSYEQYF TRBV5-1*01 TRBJ2-7*01 46.0 2707.0 _CASSLEGQASSYEQYF 9 4421 EBV-LMP2A EBV 0.75 700 EBV-LMP2A 281 4140 10 EBV LMP2A CLGGLLTMV effector memory T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*02:01 B2M MHCI -149 chip0420_577405 8.37 7.82 Chip1 T1D_1 T1D _ 6746 11001 GAD65-536-545 GAD65 0.57 7 GAD65-536-545 268 10733 8 HomoSapiens GAD65 RMMEYGTTMV effector memory T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*02:01 B2M MHCI -150 chip0420_168550 13.73 7.58 Chip1 T1D_2 T1D _ 6746 2881 EBV-BRLF1 EBV 1.0 1264 EBV-BRLF1 241 2640 10 EBV BRLF1 YVLDHLIVV effector memory T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*02:01 B2M MHCI -151 chip0420_752160 16.3 10.63 Chip1 T1D_1 T1D TGTGCCAGCAGCACGGGACAGCTATCGAACACCGGGGAGCTGTTTTTT CASSTGQLSNTGELFF TRBV9*01 TRBJ2-2*01 82.0 3691.0 _CASSTGQLSNTGELFF 82 2268 EBV-BLMF1 EBV 0.52 2531 EBV-BLMF1 238 2030 12 EBV BLMF1 GLCTLVAML effector T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*02:01 B2M MHCI -152 chip0420_769662 16.07 10.14 Chip1 T1D_1 T1D TGCGGCACAGTGGAACCTAACGACTACAAGCTCAGCTTT CGTVEPNDYKLSF TRAV30*01 TRAJ20*01 38.0 1856.0 TGTGCCAGCAGCACGGGACAGCTATCGAACACCGGGGAGCTGTTTTTT CASSTGQLSNTGELFF TRBV9*01 TRBJ2-2*01 51.0 2355.0 CGTVEPNDYKLSF_CASSTGQLSNTGELFF 1 2756 EBV-BLMF1 EBV 0.47 2531 NEG 241 2515 12 EBV BLMF1 GLCTLVAML effector T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*02:01 B2M MHCI -153 chip0420_654184 11.58 10.16 Chip1 T1D_1 T1D TGCAGCGTCGGCTCCAGGGGAACTAATGAAAAACTGTTTTTT CSVGSRGTNEKLFF TRBV29-1*01 TRBJ1-4*01 101.0 4250.0 _CSVGSRGTNEKLFF 283 2743 EBV-BLMF1 EBV 0.88 2531 NEG 254 2489 9 EBV BLMF1 GLCTLVAML effector memory T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*02:01 B2M MHCI -154 chip0420_844297 13.2 7.06 Chip1 T1D_2 T1D TGCAGCGTGGGGACAGGGGGAACTAATGAAAAACTGTTTTTT CSVGTGGTNEKLFF TRBV29-1*01 TRBJ1-4*01 60.0 2653.0 _CSVGTGGTNEKLFF 638 2888 EBV-BLMF1 EBV 0.4 2531 NEG 272 2616 10 EBV BLMF1 GLCTLVAML effector memory T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*02:01 B2M MHCI -155 chip0420_477835 9.88 7.22 Chip1 T1D_1 T1D TCTGCTGTGACTGATTTGGGAATGGCCTGCGCTTT SAVTDtt?GNGLRF TRAV8-4*01 TRAJ43*01 15.0 893.0 TGCAGCGTCGGCTCCAGGGGAACTAATGAAAAACTGTTTTTT CSVGSRGTNEKLFF TRBV29-1*01 TRBJ1-4*01 122.0 6739.0 SAVTDtt?GNGLRF_CSVGSRGTNEKLFF 1 6463 EBV-BLMF1 EBV 0.59 2531 NEG 294 6169 10 EBV BLMF1 GLCTLVAML effector memory T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*02:01 B2M MHCI -156 chip0420_681503 8.74 8.23 Chip1 T1D_1 T1D TGTGCCAGCAGCCAAAGCCCGGGTGGTACGCAGTATTTT CASSQSPGGTQYF TRBV14*01 TRBJ2-3*01 5.0 301.0 _CASSQSPGGTQYF 94 7005 EBV-BLMF1 EBV 0.76 2531 NEG 302 6703 8 EBV BLMF1 GLCTLVAML effector memory T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*02:01 B2M MHCI -157 chip0420_170716 8.21 10.49 Chip1 T1D_1 T1D TGTGCTGTCGCCTCTTTCTGGACACGGGTGGGAGAGCACTTACTTTT CAVASFWac?TGGRALTF TRAV36/DV7*01 TRAJ5*01 4.0 272.0 TGCAGTGCTAGAGATGGCACAGGGAATGGCTACACCTTC CSARDGTGNGYTF TRBV20-1*01 TRBJ1-2*01 47.0 2990.0 CAVASFWac?TGGRALTF_CSARDGTGNGYTF 1 6455 EBV-BLMF1 EBV 0.87 2531 NEG 261 6194 8 EBV BLMF1 GLCTLVAML effector memory T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*02:01 B2M MHCI -158 chip0420_754292 15.59 9.32 Chip1 T1D_2 T1D TGTGCCAGCAGGCCTTTGCCAGGGGGGGGAACTGAAGCTTTCTTT CASRPLPGGGTEAFF TRBV6-1*01 TRBJ1-1*01 70.0 1843.0 _CASRPLPGGGTEAFF 1 2657 EBV-BRLF1 EBV 0.9 1264 NEG 262 2395 12 EBV BRLF1 YVLDHLIVV effector T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*02:01 B2M MHCI -159 chip0420_201840 14.89 8.82 Chip1 T1D_2 T1D TGTGCCAGCAGCTTATTGGTTAGCGGGAGGAATAAGGTGTACGAGCAGTACTTC CASSLLVSGRNKVYEQYF TRBV11-3*01 TRBJ2-7*01 19.0 574.0 _CASSLLVSGRNKVYEQYF 1 2176 EBV-BRLF1 EBV 0.69 1264 EBV-BRLF1 235 1941 12 EBV BRLF1 YVLDHLIVV effector T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*02:01 B2M MHCI -160 chip0420_610269 10.3 10.37 Chip1 T1D_1 T1D TGTGCCAGCAGTGAAGGGCGAGTCTCTCCGGGCGAAGCTTTCTTT CASSEGRVSPGEAFF TRBV2*01 TRBJ1-1*01 37.0 1759.0 _CASSEGRVSPGEAFF 29 4437 EBV-BLMF1 EBV 0.71 2531 NEG 249 4188 9 EBV BLMF1 GLCTLVAML effector memory T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*02:01 B2M MHCI -161 chip0420_113384 13.25 6.91 Chip1 T1D_1 T1D TGTGCCGTGCAGGGGTATGACAAGATCATCTTT CAVQGYDKIIF TRAV8-1*01 TRAJ30*01 27.0 2408.0 TGTGCTGTGAGTGATACCGGCCCGCCCCTACAAATACATCTTT CAVSDTG??cRPYKYIF TRAV8-6*01 TRAJ40*01 92.0 4599.0 0.7 TGTGCCAGCAGTCCGGACCAAACTAGCTCCTACAATGAGCAGTTCTTC CASSPDQTSSYNEQFF TRBV27*01 TRBJ2-1*01 96.0 5948.0 CAVQGYDKIIF_CASSPDQTSSYNEQFF 1 4014 EBV-BRLF1 EBV 0.89 1264 EBV-BRLF1 296 3718 10 EBV BRLF1 YVLDHLIVV effector memory T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*02:01 B2M MHCI -162 chip0420_50964 9.0 9.13 Chip1 T1D_1 T1D _ 6746 6014 EBV-BRLF1 EBV 1.0 1264 EBV-BRLF1 241 5773 8 EBV BRLF1 YVLDHLIVV effector memory T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*02:01 B2M MHCI -163 chip0420_247554 12.83 6.46 Chip1 T1D_1 T1D TGTGCCTGGCGGCCCCTCTTCGGGGGCGCGGCTGAAGCTTTCTTT CAWRPLFGGAAEAFF TRBV30*01 TRBJ1-1*01 47.0 1823.0 _CAWRPLFGGAAEAFF 2 3550 EBV-BRLF1 EBV 0.75 1264 NEG 288 3262 10 EBV BRLF1 YVLDHLIVV effector memory T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*02:01 B2M MHCI -164 chip0420_164413 8.46 10.08 Chip1 T1D_2 T1D _ 6746 3679 EBV-BLMF1 EBV 0.91 2531 NEG 245 3434 8 EBV BLMF1 GLCTLVAML effector memory T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*02:01 B2M MHCI -165 chip0420_365252 6.42 14.23 Chip1 T1D_1 T1D _ 6746 3897 M1 FLU 0.91 1250 M1 286 3611 7 InfluenzaA M1 GILGFVFTL transitional T cells between effector and memory populations PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*02:01 B2M MHCI -166 chip0420_394655 12.14 10.6 Chip1 T1D_2 T1D TGCAGCGTGGGGACAGGGGGAACTAATGAAAAACTGTTTTTT CSVGTGGTNEKLFF TRBV29-1*01 TRBJ1-4*01 118.0 5093.0 _CSVGTGGTNEKLFF 638 3450 EBV-BLMF1 EBV 0.6 2531 NEG 237 3213 9 EBV BLMF1 GLCTLVAML effector memory T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*02:01 B2M MHCI -167 chip0420_797023 14.09 7.16 Chip1 T1D_2 T1D TGTGTGGTGAACGGCAGGGATAGCAGCTATAAATTGATCTTC CVVNGRDSSYKLIF TRAV12-1*01 TRAJ12*01 4.0 257.0 TGTGCCAGCAGCTCGGGACTAGTCGCCCCCGGGGAGCTGTTTTTT CASSSGLVAPGELFF TRBV2*01 TRBJ2-2*01 172.0 10847.0 CVVNGRDSSYKLIF_CASSSGLVAPGELFF 98 4499 EBV-BLMF1 EBV 0.75 2531 NEG 271 4228 10 EBV BLMF1 GLCTLVAML effector memory T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*02:01 B2M MHCI -168 chip0420_577095 13.15 6.82 Chip1 T1D_2 T1D TGTGCCAGCAGCCAAGGAGGGGCGGGAGCCGCAGATACGCAGTATTTT CASSQGGAGAADTQYF TRBV4-2*01 TRBJ2-3*01 59.0 2053.0 _CASSQGGAGAADTQYF 3 5031 EBV-BRLF1 EBV 0.8 1264 EBV-BRLF1 306 4725 10 EBV BRLF1 YVLDHLIVV effector memory T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*02:01 B2M MHCI -169 chip0420_43361 13.99 7.53 Chip1 T1D_2 T1D TGTGTGGTGAACGGCAGGGATAGCAGCTATAAATTGATCTTC CVVNGRDSSYKLIF TRAV12-1*01 TRAJ12*01 53.0 2136.0 TGTGCCAGCAGCTCGGGACTAGTCGCCCCCGGGGAGCTGTTTTTT CASSSGLVAPGELFF TRBV2*01 TRBJ2-2*01 100.0 6778.0 CVVNGRDSSYKLIF_CASSSGLVAPGELFF 98 4882 EBV-BLMF1 EBV 0.44 2531 NEG 290 4592 10 EBV BLMF1 GLCTLVAML effector memory T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*02:01 B2M MHCI -170 chip0420_150729 10.15 7.13 Chip1 T1D_2 T1D TGTGCCGGCACCCCCGCTATTACCACTGAAGCTTTCTTT CAGTPAITTEAFF TRAV9-1*01,TRAV8-1*01 TRAJ40*01 2.0 10.0 TGTGCAGAGACTATTCTGGGGGTTACCAGAAAGTTACCTTT CAETILgg?GYQKVTF TRAV5*01 TRAJ13*01 3.0 224.0 0.6 TGTGCCAGCACCCCCGATATTAACACTGAAGCTTTCTTT CASTPDINTEAFF TRBV6-1*01 TRBJ1-1*01 86.0 3462.0 CAGTPAITTEAFF_CASTPDINTEAFF 1 4582 EBV-BLMF1 EBV 0.53 2531 NEG 252 4330 10 EBV BLMF1 GLCTLVAML effector memory T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*02:01 B2M MHCI -171 chip0420_649625 13.87 9.06 Chip1 T1D_1 T1D TGTGCCGTGAAGGACACCGACAAGCTCATCTTT CAVKDTDKLIF TRAV8-1*01 TRAJ34*01 24.0 2178.0 CAVKDTDKLIF_ 56 5682 EBV-BRLF1 EBV 0.83 1264 EBV-BRLF1 254 5428 12 EBV BRLF1 YVLDHLIVV effector T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*02:01 B2M MHCI -172 chip0420_34206 11.47 6.29 Chip1 T1D_2 T1D TGCAGCGTTGACCAAAGGACAGGGCAAAAGAAGAACTATGGCTACACCTTC CSVDQRTGQKKNYGYTF TRBV29-1*01 TRBJ1-2*01 290.0 11121.0 _CSVDQRTGQKKNYGYTF 40 3949 EBV-BLMF1 EBV 0.58 2531 NEG 291 3658 10 EBV BLMF1 GLCTLVAML effector memory T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*02:01 B2M MHCI -173 chip0420_687584 8.82 7.83 Chip1 T1D_1 T1D TGTGCTCTCTATAACACCGACAAGCTCGTCTTT CALYNTDKLVF TRAV9-2*01 TRAJ34*01 29.0 2183.0 CGTGCCCGCAGCCAAAGCCCGGGGGGTACGCAGTATTTT RARSQSPGGTQYF TRBV14*01 TRBJ2-3*01 4.0 331.0 CALYNTDKLVF_RARSQSPGGTQYF 1 8899 EBV-BLMF1 EBV 0.74 2531 EBV-BLMF1 300 8599 8 EBV BLMF1 GLCTLVAML effector memory T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*02:01 B2M MHCI -174 chip0420_446741 13.48 6.74 Chip1 T1D_1 T1D TGCAGCGTCGGCTCCAGGGGAACTAATGAAAAACTGTTTTTT CSVGSRGTNEKLFF TRBV29-1*01 TRBJ1-4*01 102.0 4057.0 _CSVGSRGTNEKLFF 283 4836 EBV-BLMF1 EBV 0.47 2531 NEG 285 4551 10 EBV BLMF1 GLCTLVAML effector memory T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*02:01 B2M MHCI -175 chip0420_387902 8.82 8.22 Chip1 tet_neg TGCAGCGTGGGGCCCGGGGGAACTAACGAAACACTGTTCTTT CSVGPGGTNETLFF TRBV29-1*01 TRBJ1-4*01 3.0 424.0 _CSVGPGGTNETLFF 1 6088 EBV-BLMF1 EBV 0.73 2531 NEG 253 5835 8 EBV BLMF1 GLCTLVAML effector memory T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*02:01 B2M MHCI -176 chip0420_43596 6.06 13.32 Chip1 T1D_1 T1D TGTGCTGTGAGTGATCGGGATGGCGGCTTCAAAACTATCTTT CAVSDRDGGFKTIF TRAV8-4*01 TRAJ9*01 66.0 2876.0 TGTGCCAGTAGTATAAATGGGGGCCGGAGGGATGGCTACACCTTC CASSINGGRRDGYTF TRBV19*01 TRBJ1-2*01 1.0 57.0 CAVSDRDGGFKTIF_CASSINGGRRDGYTF 5 5045 M1 FLU 0.85 1250 M1 256 4789 7 InfluenzaA M1 GILGFVFTL transitional T cells between effector and memory populations PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*02:01 B2M MHCI -177 chip0420_318900 14.11 7.51 Chip1 T1D_2 T1D TGTGCCAGCGGCACTCTAGCGGGGGCTGGGCAGACCCAGTACTTC CASGTLAGAGQTQYF TRBV3-1*01 TRBJ2-5*01 25.0 2040.0 _CASGTLAGAGQTQYF 5 3281 EBV-BRLF1 EBV 0.85 1264 EBV-BRLF1 269 3012 10 EBV BRLF1 YVLDHLIVV effector memory T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*02:01 B2M MHCI -178 chip0420_723693 5.61 12.91 Chip1 T1D_1 T1D TGTGCTTTCATGACGAATGCTGGTGGTACTAGCTATGGAAAGCTGACATTT CAFMTNAGGTSYGKLTF TRAV38-1*01 TRAJ52*01 5.0 333.0 CAFMTNAGGTSYGKLTF_ 2 5543 M1 FLU 0.89 1250 M1 238 5305 7 InfluenzaA M1 GILGFVFTL transitional T cells between effector and memory populations PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*02:01 B2M MHCI -179 chip0420_876639 15.11 8.97 Chip1 T1D_2 T1D TGTGCCTGGAGTGTACAGCTAGCGGGAGTAGACGAGCAGTACTTC CAWSVQLAGVDEQYF TRBV30*01 TRBJ2-7*01 41.0 2054.0 _CAWSVQLAGVDEQYF 11 1991 EBV-BRLF1 EBV 0.91 1264 NEG 232 1759 12 EBV BRLF1 YVLDHLIVV effector T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*02:01 B2M MHCI -180 chip0420_680141 15.96 9.68 Chip1 T1D_2 T1D TGTGCTTCCCTAACCCCGGGGGCTTCCAAGATAATCTTT CASLTPGASKIIF TRAV8-6*01 TRAJ3*01 21.0 2063.0 TGTGCCAGCAGCTCGGGACTAGTCGCCCCCGGGGAGCTGTTTTTT CASSSGLVAPGELFF TRBV2*01 TRBJ2-2*01 97.0 5622.0 CASLTPGASKIIF_CASSSGLVAPGELFF 38 2773 EBV-BLMF1 EBV 0.5 2531 NEG 257 2516 12 EBV BLMF1 GLCTLVAML effector T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*02:01 B2M MHCI -181 chip0420_391533 11.23 6.36 Chip1 T1D_2 T1D TGTGCTACGGAGGGGTCTTCAGGATACAGCACCCTCACCTTT CATEGSSGYSTLTF TRAV17*01 TRAJ11*01 48.0 2250.0 CATEGSSGYSTLTF_ 1 7188 EBV-LMP2-FLY EBV 0.93 355 NEG 272 6916 10 EBV LMP2 FLYALALLL effector memory T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*02:01 B2M MHCI -182 chip0420_848109 13.06 8.34 Chip1 T1D_2 T1D TGCGCCAGCAGGATGGGGGCCCGGGATACGCAGTATTTT CASRMGARDTQYF TRBV10-2*01 TRBJ2-3*01 37.0 2862.0 _CASRMGARDTQYF 1 2229 EBV-BLMF1 EBV 0.86 2531 NEG 237 1992 10 EBV BLMF1 GLCTLVAML effector memory T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*02:01 B2M MHCI -183 chip0420_460198 12.85 6.45 Chip1 T1D_2 T1D TGTGCCAGCAGCGGGGGGTGGATGGCTAGCGGGAGCTCCTACAATGAGCAGTTCTTC CASSGGWMASGSSYNEQFF TRBV6-4*01 TRBJ2-1*01 55.0 1855.0 _CASSGGWMASGSSYNEQFF 1 4083 EBV-BRLF1 EBV 0.97 1264 EBV-BRLF1 269 3814 10 EBV BRLF1 YVLDHLIVV effector memory T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*02:01 B2M MHCI -184 chip0420_727380 6.41 13.08 Chip1 T1D_1 T1D _ 6746 4450 M1 FLU 0.89 1250 M1 249 4201 7 InfluenzaA M1 GILGFVFTL transitional T cells between effector and memory populations PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*02:01 B2M MHCI -185 chip0420_78188 12.06 7.2 Chip1 T1D_2 T1D TGTGCTTATAGGAGCCCGCCCTCATCTGAAAAGCTGGTCTTT CAYRSPPSSEKLVF TRAV38-2/DV8*01 TRAJ57*01 2.0 123.0 TGCAGCGACAGAGACGGAGGAAACTATGGCTACACCTTC CSDRDGGNYGYTF TRBV29-1*01 TRBJ1-2*01 194.0 12127.0 CAYRSPPSSEKLVF_CSDRDGGNYGYTF 1 3408 EBV-BRLF1 EBV 0.78 1264 EBV-BRLF1 278 3130 10 EBV BRLF1 YVLDHLIVV effector memory T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*02:01 B2M MHCI -186 chip0420_699638 10.01 10.84 Chip1 T1D_1 T1D TGTGCCAGCAGCCCAGTTAGCCGGTCAACCTACGAGCAGTACTTC CASSPVSRSTYEQYF TRBV3-1*01 TRBJ2-7*01 19.0 1128.0 _CASSPVSRSTYEQYF 1 4433 EBV-BLMF1 EBV 0.87 2531 EBV-BLMF1 272 4161 9 EBV BLMF1 GLCTLVAML effector memory T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*02:01 B2M MHCI -187 chip0420_328875 10.52 7.13 Chip1 T1D_2 T1D TGCAGCGTTGGGGGCAGCTTCTATGGCTACACCTTC CSVGGSFYGYTF TRBV29-1*01 TRBJ1-2*01 128.0 10272.0 _CSVGGSFYGYTF 42 3353 EBV-BLMF1 EBV 0.86 2531 NEG 242 3111 10 EBV BLMF1 GLCTLVAML effector memory T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*02:01 B2M MHCI -188 chip0420_210459 10.77 6.51 Chip1 T1D_2 T1D TGCGCCAGCAGGATGGGGGCCGGGGATACGCAGTATTTT CASRMGAGDTQYF TRBV10-2*01 TRBJ2-3*01 71.0 4725.0 _CASRMGAGDTQYF 90 4226 EBV-BLMF1 EBV 0.86 2531 NEG 289 3937 10 EBV BLMF1 GLCTLVAML effector memory T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*02:01 B2M MHCI -189 chip0420_724099 8.67 8.84 Chip1 T1D_1 T1D TGCAGCGTCGGCTCCAGGGGAACTAATGAAAAACTGTTTTTT CSVGSRGTNEKLFF TRBV29-1*01 TRBJ1-4*01 109.0 6352.0 _CSVGSRGTNEKLFF 283 3638 EBV-BLMF1 EBV 0.8 2531 NEG 232 3406 8 EBV BLMF1 GLCTLVAML effector memory T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*02:01 B2M MHCI -190 chip0420_533009 15.86 10.58 Chip1 T1D_2 T1D TGTGCCGTGAAGGACACCGACAAGCTCATCTTT CAVKDTDKLIF TRAV8-1*01 TRAJ34*01 26.0 2235.0 CAVKDTDKLIF_ 56 2784 EBV-BRLF1 EBV 0.82 1264 EBV-BRLF1 230 2554 12 EBV BRLF1 YVLDHLIVV effector T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*02:01 B2M MHCI -191 chip0420_84085 -1.79 9.34 Chip1 T1D_1 T1D TGTGCCAGTGATGTCGTTAGTCCGCCCCAGCATTTT CASDVVSPPQHF TRBV19*01 TRBJ1-5*01 48.0 4025.0 _CASDVVSPPQHF 1 7558 HCV-35-44 HCV 0.62 13 NEG 241 7317 3 HCV POL YLLPRRGPRL Naive T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*02:01 B2M MHCI -192 chip0420_61184 8.77 7.55 Chip1 T1D_2 T1D TGTGCTGTGAGTGAACCCTAAATAACAATGCCAGACTCATGTTT CAVSEP*a?tNNARLMF TRAV8-6*01 TRAJ31*01 1.0 66.0 TGTGCCTGGAGTGTACAGCTAGCGGGAGTAGACGAGCAGTACTTC CAWSVQLAGVDEQYF TRBV30*01 TRBJ2-7*01 64.0 2906.0 CAVSEP*a?tNNARLMF_CAWSVQLAGVDEQYF 2 5797 EBV-BRLF1 EBV 1.0 1264 NEG 261 5536 8 EBV BRLF1 YVLDHLIVV effector memory T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*02:01 B2M MHCI -193 chip0420_31764 7.61 10.64 Chip1 T1D_1 T1D TGTGCCAGCAGTTTCAGGACAGGGGCTTCCTTTGAGGAGTTCTTC CASSFRTGASFEEFF TRBV28*01 TRBJ2-1*01 84.0 4330.0 _CASSFRTGASFEEFF 1 6818 IGRP-222-230 IGRP 0.89 10 IGRP-222-230 265 6553 7 HomoSapiens IGRP YLLLRVLNI transitional T cells between effector and memory populations PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*02:01 B2M MHCI -194 chip0420_345312 5.71 8.96 Chip1 T1D_2 T1D TGTGCCAGCGGTTTACCGGATGGGAACTATGGCTACACCTTC CASGLPDGNYGYTF TRBV6-5*01 TRBJ1-2*01 20.0 864.0 _CASGLPDGNYGYTF 1 3866 EBV-LMP2-FLY EBV 0.97 355 EBV-LMP2-FLY 252 3614 6 EBV LMP2 FLYALALLL central memory T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*02:01 B2M MHCI -195 chip0420_11195 13.91 7.1 Chip1 T1D_2 T1D TGTGTGGTGAACGGCAGGGATAGCAGCTATAAATTGATCTTC CVVNGRDSSYKLIF TRAV12-1*01 TRAJ12*01 84.0 4090.0 TGTGCCAGCAGCTCGGGACTAGTCGCCCCCGGGGAGCTGTTTTTT CASSSGLVAPGELFF TRBV2*01 TRBJ2-2*01 71.0 3862.0 CVVNGRDSSYKLIF_CASSSGLVAPGELFF 98 4657 EBV-BLMF1 EBV 0.67 2531 NEG 262 4395 10 EBV BLMF1 GLCTLVAML effector memory T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*02:01 B2M MHCI -196 chip0420_829853 11.99 12.84 Chip1 T1D_2 T1D TGTGCCGTGAAGGACACCGACAAGCTCATCTTT CAVKDTDKLIF TRAV8-1*01 TRAJ34*01 25.0 2126.0 CAVKDTDKLIF_ 56 1992 EBV-BRLF1 EBV 1.0 1264 EBV-BRLF1 217 1775 11 EBV BRLF1 YVLDHLIVV effector T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*02:01 B2M MHCI -197 chip0420_69116 14.24 8.36 Chip1 T1D_2 T1D TGTGCCGTGTTCGACACCGACAAGCTCATCTTC CAVFDTDKLIF TRAV8-1*01 TRAJ34*01 22.0 2120.0 TGTGCCAGCAGCGGGGGGTGGATGGCTAGCGGGAGCTCCTACAATGAGCAGTTCTTC CASSGGWMASGSSYNEQFF TRBV6-4*01 TRBJ2-1*01 52.0 1843.0 CAVFDTDKLIF_CASSGGWMASGSSYNEQFF 1 2573 EBV-BRLF1 EBV 0.82 1264 EBV-BRLF1 236 2337 10 EBV BRLF1 YVLDHLIVV effector memory T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*02:01 B2M MHCI -198 chip0420_651499 -1.02 8.99 Chip1 T1D_1 T1D TGTGTGGTGAACATCGAGACTGGGGCACACAACCTCTTCTTT CVVNIETGAHNLFF TRAV12-1*01 TRAJ36*01 131.0 6139.0 TGCAGTGCTAGAGGACAGGGCCACGAGCAGTACTTC CSARGQGHEQYF TRBV20-1*01 TRBJ2-7*01 1.0 37.0 CVVNIETGAHNLFF_CSARGQGHEQYF 1 7925 IGRP-152-160-WLI IGRP 0.94 27 IGRP-152-160-WLI 216 7709 3 HomoSapiens IGRP FLWSVFWLI Naive T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*02:01 B2M MHCI -199 chip0420_425636 12.03 10.33 Chip1 T1D_1 T1D TGCGGCACAGAGGAACCTAACGACTACAAGCTCAGCTTT CGTEEPNDYKLSF TRAV30*01 TRAJ20*01 2.0 365.0 TGTGCCAGCAGCACGGGACAGCTATCGAACACCGGGGAGCTGTTTTTT CASSTGQLSNTGELFF TRBV9*01 TRBJ2-2*01 39.0 1969.0 CGTEEPNDYKLSF_CASSTGQLSNTGELFF 18 3586 EBV-BLMF1 EBV 0.55 2531 NEG 242 3344 9 EBV BLMF1 GLCTLVAML effector memory T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*02:01 B2M MHCI -200 chip0420_485997 8.7 8.71 Chip1 T1D_1 T1D TGCAGCGTCGGCTCCAGGGGAACTAATGAAAAACTGTTTTTT CSVGSRGTNEKLFF TRBV29-1*01 TRBJ1-4*01 109.0 5027.0 _CSVGSRGTNEKLFF 283 6459 EBV-BLMF1 EBV 0.81 2531 EBV-BLMF1 235 6224 8 EBV BLMF1 GLCTLVAML effector memory T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*02:01 B2M MHCI -201 chip0420_140433 15.53 10.23 Chip1 T1D_1 T1D _ 6746 3457 EBV-BRLF1 EBV 0.95 1264 EBV-BRLF1 250 3207 12 EBV BRLF1 YVLDHLIVV effector T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*02:01 B2M MHCI -202 chip0420_353466 -2.42 10.2 Chip1 T1D_1 T1D TGCAGCGTGGGGCCAGGGGGCACTGCTGAAAAACTGTTTTTT CSVGPGGTAEKLFF TRBV29-1*01 TRBJ1-4*01 2.0 86.0 _CSVGPGGTAEKLFF 1 6622 PGT-178 PGT 0.59 1480 PGT-178 217 6405 4 HomoSapiens PGT LLAGIGTVPI Naive T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*02:01 B2M MHCI -203 chip0420_644852 14.0 8.42 Chip1 T1D_2 T1D _ 6746 1960 EBV-BRLF1 EBV 0.97 1264 EBV-BRLF1 267 1693 10 EBV BRLF1 YVLDHLIVV effector memory T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*02:01 B2M MHCI -204 chip0420_76292 9.94 11.15 Chip1 T1D_2 T1D TGCAGCTCGCAGGAGGGCGGCTATGGCTACACCTTC CSSQEGGYGYTF TRBV29-1*01 TRBJ1-2*01 40.0 3396.0 _CSSQEGGYGYTF 11 3845 EBV-BLMF1 EBV 0.9 2531 NEG 258 3587 9 EBV BLMF1 GLCTLVAML effector memory T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*02:01 B2M MHCI -205 chip0420_608947 11.3 7.16 Chip1 T1D_2 T1D TGTGCCGTGAATGGAAATGACAAGATCATCTTT CAVNGNDKIIF TRAV8-1*01 TRAJ30*01 22.0 1995.0 TGTGCCAGCAGAGGCTTGACAGGGGGCGCGTCCGAGCAGTACTTC CASRGLTGGASEQYF TRBV6-1*01 TRBJ2-7*01 12.0 510.0 CAVNGNDKIIF_CASRGLTGGASEQYF 1 3436 EBV-BRLF1 EBV 0.96 1264 EBV-BRLF1 268 3168 10 EBV BRLF1 YVLDHLIVV effector memory T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*02:01 B2M MHCI -206 chip0420_622861 5.81 13.32 Chip1 T1D_1 T1D TGTGCCAGTAGTATTTATGGAGGGAGCGGTGAAGCTTTCTTT CASSIYGGSGEAFF TRBV19*01 TRBJ1-1*01 21.0 877.0 _CASSIYGGSGEAFF 4 5315 M1 FLU 0.79 1250 M1 238 5077 7 InfluenzaA M1 GILGFVFTL transitional T cells between effector and memory populations PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*02:01 B2M MHCI -207 chip0420_651282 8.69 8.73 Chip1 T1D_1 T1D TGTGCTGTGGTCTCAAATTCCGGGTATGCACTCAACTTC CAVVSNSGYALNF TRAV21*01 TRAJ41*01 28.0 2046.0 TGTGCCAGCAGTTCCGGCGGGAACGTGGATACGCAGTATTTC CASSSGGNVDTQYF TRBV7-3*01 TRBJ2-3*01 23.0 869.0 CAVVSNSGYALNF_CASSSGGNVDTQYF 8 4423 EBV-BLMF1 EBV 0.8 2531 NEG 224 4199 8 EBV BLMF1 GLCTLVAML effector memory T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*02:01 B2M MHCI -208 chip0420_425356 6.91 12.25 Chip1 T1D_2 T1D TGCAGTGTACTAGCGGCCTACGAGCAGTACTTC CSVLAAYEQYF TRBV20-1*01 TRBJ2-7*01 49.0 4130.0 _CSVLAAYEQYF 1 5860 ZNT8-16-24 ZNT8 0.41 39 NEG 254 5606 7 HomoSapiens ZNT8 KMYAFTLES transitional T cells between effector and memory populations PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*02:01 B2M MHCI -209 chip0420_504651 11.11 10.26 Chip1 T1D_1 T1D TGCAGCGTCGGCTCCAGGGGAACTAATGAAAAACTGTTTTTT CSVGSRGTNEKLFF TRBV29-1*01 TRBJ1-4*01 201.0 9529.0 _CSVGSRGTNEKLFF 283 4355 EBV-BLMF1 EBV 0.67 2531 NEG 244 4111 9 EBV BLMF1 GLCTLVAML effector memory T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*02:01 B2M MHCI -210 chip0420_594465 14.87 8.56 Chip1 T1D_2 T1D TGTGCAGAGAGTACTTCGGGAGGAAAGCTTATCTTC CAESTSGGKLIF TRAV5*01 TRAJ23*01 19.0 2023.0 TGCAGCGTGGGGACAGGGGGAACTAATGAAAAACTGTTTTTT CSVGTGGTNEKLFF TRBV29-1*01 TRBJ1-4*01 75.0 4276.0 CAESTSGGKLIF_CSVGTGGTNEKLFF 107 2319 EBV-BLMF1 EBV 0.9 2531 NEG 244 2075 12 EBV BLMF1 GLCTLVAML effector T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*02:01 B2M MHCI -211 chip0420_596058 9.71 8.77 Chip1 T1D_2 T1D TGTGCCGTGAAGGACACCGACAAGCTCATCTTT CAVKDTDKLIF TRAV8-1*01 TRAJ34*01 23.0 2120.0 TGCATCGTCAGAGTCGAGCCCCGGCCGGCCCTGCTCTGCTCTTT CIVRVEPc?gAGPALLF TRAV26-1*01 TRAJ15*01 35.0 2038.0 0.52 CGCGCCAGCAGTGATCTGGCGAATGAGCAGTTCTTC RASSDLANEQFF TRBV10-1*01 TRBJ2-1*01 10.0 668.0 CAVKDTDKLIF_RASSDLANEQFF 1 3776 EBV-BRLF1 EBV 0.82 1264 EBV-BRLF1 227 3549 8 EBV BRLF1 YVLDHLIVV effector memory T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*02:01 B2M MHCI -212 chip0420_514032 5.96 13.88 Chip1 T1D_1 T1D TGTGGCACTCAAGAGAATGACAGCTGGGGGAAATTGCAGTTT CGTQENDSWGKLQF TRAV30*01 TRAJ24*01 1.0 181.0 TGTGCCAGTAGTGTCAGGGCAGGAGAGACCCAGTACTTC CASSVRAGETQYF TRBV19*01 TRBJ2-5*01 38.0 2361.0 CGTQENDSWGKLQF_CASSVRAGETQYF 9 4494 M1 FLU 0.79 1250 M1 244 4250 7 InfluenzaA M1 GILGFVFTL transitional T cells between effector and memory populations PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*02:01 B2M MHCI -213 chip0420_39354 -1.89 7.22 Chip1 T1D_1 T1D TGTGCCAGCAGTGACACCGGGACTATGCACTACGAGCAGTACTTC CASSDTGTMHYEQYF TRBV12-3*01,TRBV12-4*01 TRBJ2-7*01 49.0 3087.0 _CASSDTGTMHYEQYF 1 9601 PGT-178 PGT 0.65 1480 PGT-178 219 9382 3 HomoSapiens PGT LLAGIGTVPI Naive T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*02:01 B2M MHCI -214 chip0420_50945 11.66 6.27 Chip1 T1D_2 T1D TGTGCTTCCCTAACCCCGGGGGCTTCCAAGATAATCTTT CASLTPGASKIIF TRAV8-6*01 TRAJ3*01 40.0 4022.0 TGTGTGGTGAACGGCAGGGATAGCAGCTATAAATTGATCTTC CVVNGRDSSYKLIF TRAV12-1*01 TRAJ12*01 40.0 1302.0 0.47 TGTGCCAGCAGCTCGGGACTAGTCGCCCCCGGGGAGCTGTTTTTT CASSSGLVAPGELFF TRBV2*01 TRBJ2-2*01 53.0 3453.0 CASLTPGASKIIF_CASSSGLVAPGELFF 38 6049 EBV-BLMF1 EBV 0.44 2531 NEG 286 5763 10 EBV BLMF1 GLCTLVAML effector memory T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*02:01 B2M MHCI -215 chip0420_342511 15.39 8.75 Chip1 T1D_2 T1D TGCAGCGTGGGGACAGGGGGAACTAATGAAAAACTGTTTTTT CSVGTGGTNEKLFF TRBV29-1*01 TRBJ1-4*01 69.0 2735.0 _CSVGTGGTNEKLFF 638 2963 EBV-BLMF1 EBV 0.6 2531 NEG 219 2744 12 EBV BLMF1 GLCTLVAML effector T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*02:01 B2M MHCI -216 chip0420_187187 15.88 9.83 Chip1 T1D_1 T1D TGTGCCAGCAGCCAAAGCCCGGGTGGTACGCAGTATTTT CASSQSPGGTQYF TRBV14*01 TRBJ2-3*01 4.0 145.0 _CASSQSPGGTQYF 94 3322 EBV-BLMF1 EBV 0.8 2531 NEG 256 3066 12 EBV BLMF1 GLCTLVAML effector T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*02:01 B2M MHCI -217 chip0420_190508 13.93 9.55 Chip1 T1D_1 T1D TGTGCAGAGGCGGCCAACCAGGCAGGAACTGCTCTGATCTTT CAEAANQAGTALIF TRAV5*01 TRAJ15*01 4.0 312.0 TGTGCCAGCAGCCAAAGCCCGGGTGGTACGCAGTATTTT CASSQSPGGTQYF TRBV14*01 TRBJ2-3*01 6.0 361.0 CAEAANQAGTALIF_CASSQSPGGTQYF 9 4090 EBV-BLMF1 EBV 0.5 2531 NEG 227 3863 12 EBV BLMF1 GLCTLVAML effector T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*02:01 B2M MHCI -218 chip0420_817541 14.73 9.72 Chip1 T1D_2 T1D TGTGCCGTGAAGGACACCGACAAGCTCATCTTT CAVKDTDKLIF TRAV8-1*01 TRAJ34*01 23.0 2130.0 TGTGCCTGGAGTGTACAGCTAGCGGGAGTAGACGAGCAGTACTTC CAWSVQLAGVDEQYF TRBV30*01 TRBJ2-7*01 21.0 928.0 CAVKDTDKLIF_CAWSVQLAGVDEQYF 9 2467 EBV-BRLF1 EBV 1.0 1264 EBV-BRLF1 268 2199 12 EBV BRLF1 YVLDHLIVV effector T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*02:01 B2M MHCI -219 chip0420_726278 7.46 13.8 Chip1 T1D_1 T1D TGTGCCAGTAGTGCCCGGTCAGCCTACGAGCAGTACTTC CASSARSAYEQYF TRBV19*01 TRBJ2-7*01 4.0 107.0 _CASSARSAYEQYF 1 3391 M1 FLU 0.76 1250 M1 229 3162 7 InfluenzaA M1 GILGFVFTL transitional T cells between effector and memory populations PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*02:01 B2M MHCI -220 chip0420_691929 13.42 6.63 Chip1 T1D_2 T1D TGTGCAGAGAGTACTTCGGGAGGAAAGCTTATCTTC CAESTSGGKLIF TRAV5*01 TRAJ23*01 35.0 2953.0 TGCAGCGTGGGGACAGGGGGAACTAATGAAAAACTGTTTTTT CSVGTGGTNEKLFF TRBV29-1*01 TRBJ1-4*01 236.0 11839.0 CAESTSGGKLIF_CSVGTGGTNEKLFF 107 4333 EBV-BLMF1 EBV 0.57 2531 NEG 275 4058 10 EBV BLMF1 GLCTLVAML effector memory T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*02:01 B2M MHCI -221 chip0420_431752 5.51 8.75 Chip1 T1D_2 T1D TGTGCCGCCACCTCCTATACCGGCACTGCCAGTAAACTCACCTTT CAATSYTGTASKLTF TRAV8-1*01 TRAJ44*01 1.0 338.0 TGTGCCAGCAGTTTATACTACAATGAGCAGTTCTTC CASSLYYNEQFF TRBV12-3*01,TRBV12-4*01 TRBJ2-1*01 37.0 2094.0 CAATSYTGTASKLTF_CASSLYYNEQFF 3 6544 EBV-LMP1-1 EBV 0.84 237 EBV-LMP1-1 236 6308 6 EBV LMP1 YLLEMLWRL central memory T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*02:01 B2M MHCI -222 chip0420_330738 13.88 7.16 Chip1 T1D_2 T1D TGTGCCCTGAACACCGACAAGCTCATCTTT CALNTDKLIF TRAV8-1*01 TRAJ34*01 18.0 2045.0 TGTGCCAGCGGCACTCTAGCGGGGGCTGGGCAGACCCAGTACTTC CASGTLAGAGQTQYF TRBV3-1*01 TRBJ2-5*01 13.0 742.0 CALNTDKLIF_CASGTLAGAGQTQYF 2 2721 EBV-BRLF1 EBV 0.94 1264 EBV-BRLF1 262 2459 10 EBV BRLF1 YVLDHLIVV effector memory T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*02:01 B2M MHCI -223 chip0420_123806 16.67 11.06 Chip1 T1D_2 T1D TGTGCCGTGTCCGGAGGCTTCAAAACTATCTTT CAVSGGFKTIF TRAV12-2*01 TRAJ9*01 56.0 4424.0 TGTGCCAGCATGGACTCCAACTCTGGAAACACCATATATTTT CASMDSNSGNTIYF TRBV2*01 TRBJ1-3*01 21.0 863.0 CAVSGGFKTIF_CASMDSNSGNTIYF 3 2441 IAPP-5-13 IAPP 0.53 30 NEG 264 2177 12 HomoSapiens IAPP KLQVFLIVL effector T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*02:01 B2M MHCI -224 chip0420_429300 14.18 8.06 Chip1 T1D_2 T1D TGTGCCAGCAGTGCGGGACAGGTGGCCCCGGGCGAGCAGTACTTC CASSAGQVAPGEQYF TRBV2*01 TRBJ2-7*01 19.0 1095.0 _CASSAGQVAPGEQYF 3 3425 EBV-BLMF1 EBV 0.71 2531 NEG 261 3164 10 EBV BLMF1 GLCTLVAML effector memory T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*02:01 B2M MHCI -225 chip0420_789936 8.79 8.83 Chip1 T1D_1 T1D TGTGCCGTGAAGGACACCGACAAGCTCATCTTT CAVKDTDKLIF TRAV8-1*01 TRAJ34*01 1.0 73.0 CAVKDTDKLIF_ 56 6330 EBV-BRLF1 EBV 0.72 1264 EBV-BRLF1 246 6084 8 EBV BRLF1 YVLDHLIVV effector memory T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*02:01 B2M MHCI -226 chip0420_125123 13.06 7.33 Chip1 T1D_2 T1D TGCGCCAGCAGAGCGGGCGCCGGGGATACGCAGTATTTT CASRAGAGDTQYF TRBV10-2*01 TRBJ2-3*01 33.0 2471.0 _CASRAGAGDTQYF 59 2553 EBV-BLMF1 EBV 0.52 2531 NEG 270 2283 10 EBV BLMF1 GLCTLVAML effector memory T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*02:01 B2M MHCI -227 chip0420_2503 15.14 8.87 Chip1 T1D_2 T1D TGTGCCAGCAGCCAAGATCTGCTAGCAGTGGGGGAGCTGTTTTTT CASSQDLLAVGELFF TRBV3-1*01 TRBJ2-2*01 45.0 2139.0 _CASSQDLLAVGELFF 1 2186 EBV-BRLF1 EBV 0.91 1264 EBV-BRLF1 243 1943 12 EBV BRLF1 YVLDHLIVV effector T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*02:01 B2M MHCI -228 chip0420_135619 11.61 7.51 Chip1 T1D_2 T1D TGTGCCAGCAGCCCCTCGACTAGCGGGAGTGGGGAGACCCAGTACTTC CASSPSTSGSGETQYF TRBV3-1*01 TRBJ2-5*01 26.0 1434.0 _CASSPSTSGSGETQYF 18 3520 EBV-BRLF1 EBV 0.93 1264 EBV-BRLF1 222 3298 10 EBV BRLF1 YVLDHLIVV effector memory T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*02:01 B2M MHCI -229 chip0420_755067 11.21 6.52 Chip1 T1D_2 T1D TGTGCCAGCAGCTCGGGACTAGTCGCCCCCGGGGAGCTGTTTTTT CASSSGLVAPGELFF TRBV2*01 TRBJ2-2*01 43.0 2332.0 _CASSSGLVAPGELFF 133 5826 EBV-BLMF1 EBV 1.0 2531 NEG 270 5556 10 EBV BLMF1 GLCTLVAML effector memory T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*02:01 B2M MHCI -230 chip0420_186825 13.38 10.87 Chip1 T1D_2 T1D TGTGCCTGGAGTGTACAGCTAGCGGGAGTAGACGAGCAGTACTTC CAWSVQLAGVDEQYF TRBV30*01 TRBJ2-7*01 38.0 1913.0 _CAWSVQLAGVDEQYF 11 2260 EBV-BRLF1 EBV 0.77 1264 NEG 254 2006 12 EBV BRLF1 YVLDHLIVV effector T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*02:01 B2M MHCI -231 chip0420_829592 -3.42 10.89 Chip1 T1D_1 T1D TGTGCCAGCAGCTCCGACAGTAATCAGCCCCAGCATTTT CASSSDSNQPQHF TRBV11-1*01 TRBJ1-5*01 176.0 7488.0 _CASSSDSNQPQHF 1 4428 HCVNS3-1073-1081 HCV 0.5 36 NEG 210 4218 2 HCV NS3 CINGVCWTV Naive T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*02:01 B2M MHCI -232 chip0420_377514 8.23 7.92 Chip1 T1D_1 T1D _ 6746 9867 VPR-59-67 HIV 0.52 16 NEG 219 9648 8 HIV-1 VPR AIIRILQQL effector memory T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*02:01 B2M MHCI -233 chip0420_168814 7.36 9.57 Chip1 T1D_1 T1D _ 6746 8967 M1 FLU 0.65 1250 M1 237 8730 7 InfluenzaA M1 GILGFVFTL transitional T cells between effector and memory populations PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*02:01 B2M MHCI -234 chip0420_273108 8.39 9.17 Chip1 T1D_1 T1D TGTGCTGTGGTCTCAAATTCCGGGTATGCACTCAACTTC CAVVSNSGYALNF TRAV12-2*01 TRAJ41*01 11.0 1464.0 TGTGCCAGCAGTTCCGGAGGGAACGTGGATACGCAGTATTTT CASSSGGNVDTQYF TRBV7-3*01 TRBJ2-3*01 108.0 4369.0 CAVVSNSGYALNF_CASSSGGNVDTQYF 8 5961 EBV-BLMF1 EBV 0.53 2531 NEG 248 5713 8 EBV BLMF1 GLCTLVAML effector memory T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*02:01 B2M MHCI -235 chip0420_752108 11.48 6.59 Chip1 T1D_2 T1D TGCGCCAGCAGGATGGGGGCCGGGGATACGCAGTATTTT CASRMGAGDTQYF TRBV10-2*01 TRBJ2-3*01 43.0 2495.0 _CASRMGAGDTQYF 90 3873 EBV-BLMF1 EBV 1.0 2531 NEG 269 3604 10 EBV BLMF1 GLCTLVAML effector memory T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*02:01 B2M MHCI -236 chip0420_195240 7.5 9.96 Chip1 T1D_1 T1D TGTGCCAGCAGCCCAGTTAGCGGGTCAACCTACGAGCAGTACTTC CASSPVSGSTYEQYF TRBV3-1*01 TRBJ2-7*01 69.0 3722.0 _CASSPVSGSTYEQYF 80 6017 EBV-BLMF1 EBV 0.78 2531 EBV-BLMF1 223 5794 8 EBV BLMF1 GLCTLVAML effector memory T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*02:01 B2M MHCI -237 chip0420_199688 6.6 14.59 Chip1 T1D_1 T1D TGTGCCAGTAGTATAAATGGGGGCCGGAGGGATGGCTACACCTTC CASSINGGRRDGYTF TRBV19*01 TRBJ1-2*01 22.0 748.0 _CASSINGGRRDGYTF 32 4557 M1 FLU 0.79 1250 M1 239 4318 7 InfluenzaA M1 GILGFVFTL transitional T cells between effector and memory populations PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*02:01 B2M MHCI -238 chip0420_669095 11.45 6.21 Chip1 T1D_1 T1D TGTGCTACGGAAGGGGCTTCAGGATACAGCACCCTCACCTTT CATEGASGYSTLTF TRAV17*01 TRAJ11*01 41.0 2254.0 TGTGCCAGCAGTGTGCAGGGTGGTCACTATGGCTACACCTTC CASSVQGGHYGYTF TRBV6-1*01 TRBJ1-2*01 15.0 571.0 CATEGASGYSTLTF_CASSVQGGHYGYTF 1 6910 EBV-LMP2-FLY EBV 0.81 355 EBV-LMP2-FLY 275 6635 10 EBV LMP2 FLYALALLL effector memory T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*02:01 B2M MHCI -239 chip0420_74890 14.82 8.54 Chip1 T1D_2 T1D TGTGCCAGCAGCTCGGGACTAGTCGCCCCCGGGGAGCTGTTTTTT CASSSGLVAPGELFF TRBV2*01 TRBJ2-2*01 51.0 3392.0 _CASSSGLVAPGELFF 133 2632 EBV-BLMF1 EBV 0.75 2531 NEG 232 2400 12 EBV BLMF1 GLCTLVAML effector T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*02:01 B2M MHCI -240 chip0420_184522 10.58 10.84 Chip1 T1D_1 T1D TGTGCTCTCTATAACGCCGACAAGCTCATCTTT CALYNADKLIF TRAV9-2*01 TRAJ34*01 26.0 2075.0 CALYNADKLIF_ 1 3492 EBV-BLMF1 EBV 0.88 2531 NEG 234 3258 9 EBV BLMF1 GLCTLVAML effector memory T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*02:01 B2M MHCI -241 chip0420_355396 5.07 11.26 Chip1 T1D_2 T1D TGTGCCGTGCCAGATGACAAGATCATCTTT CAVPDDKIIF TRAV12-2*01 TRAJ30*01 5.0 322.0 TGTGCCAGCAGCCCGCGGTGGAGCGAGAATGAGCAGTTCTTC CASSPRWSENEQFF TRBV12-3*01,TRBV12-4*01 TRBJ2-1*01 39.0 2453.0 CAVPDDKIIF_CASSPRWSENEQFF 1 4755 PGT-178 PGT 0.9 1480 PGT-178 207 4548 6 HomoSapiens PGT LLAGIGTVPI central memory T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*02:01 B2M MHCI -242 chip0420_706255 10.28 6.96 Chip1 T1D_2 T1D TGCGCCAGCAGAGCGGGAGCCGGGGCTACGCAGTATTTT CASRAGAGATQYF TRBV10-2*01 TRBJ2-3*01 4.0 175.0 _CASRAGAGATQYF 3 4511 EBV-BLMF1 EBV 0.73 2531 NEG 234 4277 10 EBV BLMF1 GLCTLVAML effector memory T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*02:01 B2M MHCI -243 chip0420_285061 6.44 11.61 Chip1 T1D_1 T1D TGTGCTCCGAGGGGTTCTGCAAGGCAACTGACCCTT CAPRGSARQLTL TRAV9-2*01 TRAJ22*01 36.0 2756.0 TGTGCTCTTCCGGGTAGCAACACAGGCAAACTAATCTTT CALPGSNTGKLIF TRAV19*01 TRAJ37*01 33.0 2155.0 0.45 TGTGCCAGCAGTTTTCTCGGGACAGGTCTCAACGAGCAGTACTTC CASSFLGTGLNEQYF TRBV28*01 TRBJ2-7*01 3.0 215.0 CAPRGSARQLTL_CASSFLGTGLNEQYF 1 6486 M1 FLU 0.81 1250 M1 227 6259 7 InfluenzaA M1 GILGFVFTL transitional T cells between effector and memory populations PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*02:01 B2M MHCI -244 chip0420_36687 9.28 8.97 Chip1 T1D_1 T1D TGTGCTCTAAAGGACACCGACAAGCTCATCTTT CALKDTDKLIF TRAV16*01 TRAJ34*01 21.0 2078.0 TGTGTTCCCCCAATTCTGGGGGTTACCAGAAAGTTACCTTT CVPPILgg?GYQKVTF TRAV19*01 TRAJ13*01 30.0 2408.0 0.54 TGTGCCACCAGTGATTGGCTGACTAACGAGCAGTACTTC CATSDWLTNEQYF TRBV24-1*01 TRBJ2-7*01 63.0 3264.0 CALKDTDKLIF_CATSDWLTNEQYF 1 4358 EBV-BRLF1 EBV 0.97 1264 EBV-BRLF1 237 4121 8 EBV BRLF1 YVLDHLIVV effector memory T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*02:01 B2M MHCI -245 chip0420_42983 13.22 6.87 Chip1 T1D_2 T1D TGCAGCGTGGGGACAGGGGGAACTAATGAAAAACTGTTTTTT CSVGTGGTNEKLFF TRBV29-1*01 TRBJ1-4*01 8.0 214.0 _CSVGTGGTNEKLFF 638 4160 EBV-BLMF1 EBV 0.57 2531 NEG 259 3901 10 EBV BLMF1 GLCTLVAML effector memory T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*02:01 B2M MHCI -246 chip0420_781626 13.88 7.71 Chip1 T1D_1 T1D TGTGCCAGCAGCACGGGACAGCTATCGAACACCGGGGAGCTGTTTTTT CASSTGQLSNTGELFF TRBV9*01 TRBJ2-2*01 15.0 438.0 _CASSTGQLSNTGELFF 82 2657 EBV-BLMF1 EBV 0.69 2531 NEG 235 2422 10 EBV BLMF1 GLCTLVAML effector memory T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*02:01 B2M MHCI -247 chip0420_783196 8.68 8.62 Chip1 tet_neg TGTGCCTGGAGTGACCAACTAGGGGCGGCACGGGAGCTGTTTTTT CAWSDQLGAARELFF TRBV30*01 TRBJ2-2*01 86.0 4090.0 _CAWSDQLGAARELFF 7 7212 EBV-BRLF1 EBV 0.96 1264 EBV-BRLF1 261 6951 8 EBV BRLF1 YVLDHLIVV effector memory T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*02:01 B2M MHCI -248 chip0420_765958 12.33 10.77 Chip1 T1D_2 T1D TGTGTGGTGAACCCCCCCCACGACTACAAGCTCAGCTTT CVVNPPHDYKLSF TRAV12-1*01 TRAJ20*01 22.0 1605.0 TGTGCCAGCAGCGTAGGGGTTCTTAGCGCCGGGGAGCTGTTTTTT CASSVGVLSAGELFF TRBV9*01 TRBJ2-2*01 93.0 5495.0 CVVNPPHDYKLSF_CASSVGVLSAGELFF 4 3319 EBV-BLMF1 EBV 0.88 2531 NEG 227 3092 9 EBV BLMF1 GLCTLVAML effector memory T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*02:01 B2M MHCI -249 chip0420_556548 8.43 10.71 Chip1 T1D_2 T1D TGTGCCTTTGGCGGCCTGACCTTT CAFGGLTF TRAV8-1*01 TRAJ22*01 25.0 2235.0 TGTGCCAGCAGCCCCTCGACTAGCGGGAGTGGGGAGACCCAGTACTTC CASSPSTSGSGETQYF TRBV3-1*01 TRBJ2-5*01 10.0 397.0 CAFGGLTF_CASSPSTSGSGETQYF 3 4419 EBV-BRLF1 EBV 0.95 1264 EBV-BRLF1 222 4197 8 EBV BRLF1 YVLDHLIVV effector memory T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*02:01 B2M MHCI -250 chip0420_377089 12.57 6.46 Chip1 T1D_1 T1D TGCGGCCCAGAGGAACCTAACGACTACAAGCTCAGCTTT CGPEEPNDYKLSF TRAV30*01 TRAJ20*01 44.0 2717.0 TGTGCCAGCAGCACGGGACAGCTATCGAACACCGGGGAGCTGTTTTTT CASSTGQLSNTGELFF TRBV9*01 TRBJ2-2*01 37.0 2100.0 CGPEEPNDYKLSF_CASSTGQLSNTGELFF 14 4070 EBV-BLMF1 EBV 0.72 2531 NEG 240 3830 10 EBV BLMF1 GLCTLVAML effector memory T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*02:01 B2M MHCI -251 chip0420_160012 10.37 10.17 Chip1 T1D_1 T1D TGTGCCAGCAGCCCGACTAGCGGGAGTATTTATGAGCAGTTCTTC CASSPTSGSIYEQFF TRBV3-1*01 TRBJ2-1*01 30.0 1798.0 _CASSPTSGSIYEQFF 2 4199 EBV-BLMF1 EBV 0.86 2531 EBV-BLMF1 212 3987 9 EBV BLMF1 GLCTLVAML effector memory T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*02:01 B2M MHCI -252 chip0420_830807 12.67 13.74 Chip1 T1D_2 T1D TGTGCCGTGAATTCAAAAAACTATCAGTTAATCTGG CAVNSKNYQLIW TRAV12-2*01 TRAJ33*01 78.0 4266.0 TGCAGCGACAGAGACGGAGGAAACTATGGCTACACCTTC CSDRDGGNYGYTF TRBV29-1*01 TRBJ1-2*01 80.0 4317.0 CAVNSKNYQLIW_CSDRDGGNYGYTF 2 1020 EBV-BRLF1 EBV 1.0 1264 NEG 246 774 11 EBV BRLF1 YVLDHLIVV effector T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*02:01 B2M MHCI -253 chip0420_598374 13.4 7.15 Chip1 T1D_2 T1D TGTGCAGAGGATAACAATGCCAGACTCTTGTTT CAEDNNARLLF TRAV5*01 TRAJ31*01 1.0 12.0 TGCAGCGTTGACCAAAGGACAGGGCAAAAGAAGAACTATGGCTACACCTTC CSVDQRTGQKKNYGYTF TRBV29-1*01 TRBJ1-2*01 43.0 1581.0 CAEDNNARLLF_CSVDQRTGQKKNYGYTF 1 2910 EBV-BLMF1 EBV 1.0 2531 NEG 237 2673 10 EBV BLMF1 GLCTLVAML effector memory T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*02:01 B2M MHCI -254 chip0420_51520 7.21 12.58 Chip1 T1D_1 T1D _ 6746 3451 M1 FLU 0.8 1250 M1 225 3226 7 InfluenzaA M1 GILGFVFTL transitional T cells between effector and memory populations PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*02:01 B2M MHCI -255 chip0420_59317 15.79 10.72 Chip1 T1D_1 T1D TGTGCCGTGGACCCATGGGGTAACCAGTTCTATTTT CAVDPWGNQFYF TRAV39*01 TRAJ49*01 39.0 2215.0 TGTGCCACCCAACAGGGGAGGGACAGTCAGCCCCAGCATTTT CATQQGRDSQPQHF TRBV28*01 TRBJ1-5*01 20.0 681.0 CAVDPWGNQFYF_CATQQGRDSQPQHF 16 2206 EBV-BLMF1 EBV 0.73 2531 EBV-BLMF1 219 1987 12 EBV BLMF1 GLCTLVAML effector T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*02:01 B2M MHCI -256 chip0420_463956 9.2 7.58 Chip1 T1D_2 T1D TGTGCAGAGAGTACTTCGGGAGGAAAGCTTATCTTC CAESTSGGKLIF TRAV5*01 TRAJ23*01 1.0 301.0 TGTGCAGAGAAGGCCTGGGGGTTACCAGAAAGTTACCTTT CAEKAWgg??gtYQKVTF TRAV5*01 TRAJ13*01 2.0 79.0 0.67 TGCAGCGTGGGGACAGGGGGAACTAATGAAAAACTGTTTTTT CSVGTGGTNEKLFF TRBV29-1*01 TRBJ1-4*01 345.0 11455.0 CAESTSGGKLIF_CSVGTGGTNEKLFF 107 6726 EBV-BLMF1 EBV 0.67 2531 NEG 284 6442 8 EBV BLMF1 GLCTLVAML effector memory T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*02:01 B2M MHCI -257 chip0420_246608 -1.07 9.2 Chip1 T1D_1 T1D TGTGCAATGAGAGAGGCGATGGATAGCAGCTATAAATTGATCTTC CAMREAMDSSYKLIF TRAV14/DV4*01 TRAJ12*01 68.0 2408.0 TGTGCCCGCAGCCCAGAGGGTGAGGGGGTACACGCTGAAGCTTTCTTT CARSPEGEGVHAEAFF TRBV4-2*01 TRBJ1-1*01 7.0 204.0 CAMREAMDSSYKLIF_CARSPEGEGVHAEAFF 1 8921 ROTA-VP3 ROTA 0.88 41 ROTA-VP3 236 8685 3 RotavirusA VP3 YLLPGWKL Naive T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*02:01 B2M MHCI -258 chip0420_718380 5.51 12.77 Chip1 T1D_1 T1D TGTGCCTTTCTTCCTGCTGGGGGTTCTGCGATTCCCCCCCGATAACCTCATCTTT CAFLPAGGS??gRFPPDNLIF TRAV24*01 TRAJ42*01 2.0 24.0 TGTGCCAGTAGTAGGGCTAGCACAGATACGCAGTATTTT CASSRASTDTQYF TRBV19*01 TRBJ2-3*01 39.0 1716.0 CAFLPAGGS??gRFPPDNLIF_CASSRASTDTQYF 1 6661 M1 FLU 1.0 1250 M1 217 6444 7 InfluenzaA M1 GILGFVFTL transitional T cells between effector and memory populations PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*02:01 B2M MHCI -259 chip0420_622541 5.8 13.34 Chip1 T1D_1 T1D _ 6746 4854 M1 FLU 0.71 1250 NEG 252 4602 7 InfluenzaA M1 GILGFVFTL transitional T cells between effector and memory populations PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*02:01 B2M MHCI -260 chip0420_587058 5.24 11.81 Chip1 T1D_2 T1D TGTGCCAGCAGCATCCCGGGGGACACTGAAGCTTTCTTT CASSIPGDTEAFF TRBV12-3*01,TRBV12-4*01 TRBJ1-1*01 18.0 1494.0 _CASSIPGDTEAFF 1 6103 PGT-178 PGT 0.8 1480 PGT-178 249 5854 6 HomoSapiens PGT LLAGIGTVPI central memory T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*02:01 B2M MHCI -261 chip0420_241584 14.0 8.06 Chip1 T1D_2 T1D TGTGCCGTGAAGAGGAGAGCTGCAGGCAACAAGCTAACTTTT CAVKRRAAGNKLTF TRAV12-2*01 TRAJ17*01 5.0 416.0 CAVKRRAAGNKLTF_ 1 2287 EBV-BRLF1 EBV 0.95 1264 EBV-BRLF1 265 2022 10 EBV BRLF1 YVLDHLIVV effector memory T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*02:01 B2M MHCI -262 chip0420_248721 12.41 6.47 Chip1 T1D_1 T1D TGCAGTGTTAGAGACGGGACAGGGAATGGCTACACCTTC CSVRDGTGNGYTF TRBV20-1*01 TRBJ1-2*01 32.0 1675.0 _CSVRDGTGNGYTF 1 3844 EBV-BLMF1 EBV 0.95 2531 EBV-BLMF1 242 3602 10 EBV BLMF1 GLCTLVAML effector memory T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*02:01 B2M MHCI -263 chip0420_462068 0.01 4.48 Chip1 T1D_1 T1D TGTGCCAGCAGGGGGCTGGGGGCGGTTTCTGGGGCCAACGTCCTGACTTTC CASRGLGAVSGANVLTF TRBV27*01 TRBJ2-6*01 56.0 1986.0 _CASRGLGAVSGANVLTF 1 7291 HCV-L2I HCV 0.43 9 NEG 211 7080 5 HCV POL KIVALGINAV natural killer-like T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*02:01 B2M MHCI -264 chip0420_172481 14.01 9.28 Chip1 T1D_1 T1D TGCAGCGTCGGCTCCAGGGGAACTAATGAAAAACTGTTTTTT CSVGSRGTNEKLFF TRBV29-1*01 TRBJ1-4*01 199.0 11255.0 _CSVGSRGTNEKLFF 283 3534 EBV-BLMF1 EBV 0.45 2531 NEG 230 3304 12 EBV BLMF1 GLCTLVAML effector T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*02:01 B2M MHCI -265 chip0420_210428 12.38 7.18 Chip1 T1D_2 T1D TGCAGCGTGGGGACAGGGGGAACTAATGAAAAACTGTTTTTT CSVGTGGTNEKLFF TRBV29-1*01 TRBJ1-4*01 9.0 311.0 _CSVGTGGTNEKLFF 638 3843 EBV-BLMF1 EBV 0.5 2531 NEG 279 3564 10 EBV BLMF1 GLCTLVAML effector memory T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*02:01 B2M MHCI -266 chip0420_590444 12.26 7.44 Chip1 T1D_2 T1D _ 6746 4231 EBV-BLMF1 EBV 0.75 2531 NEG 259 3972 10 EBV BLMF1 GLCTLVAML effector memory T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*02:01 B2M MHCI -267 chip0420_610994 6.91 11.53 Chip1 T1D_1 T1D TGTGCCAGCAGCTGGGGGACAGGGGAGTTGGAGACCCAGTACTTC CASSWGTGELETQYF TRBV5-6*01 TRBJ2-5*01 31.0 2199.0 _CASSWGTGELETQYF 1 5655 PGT-178 PGT 0.95 1480 PGT-178 241 5414 7 HomoSapiens PGT LLAGIGTVPI transitional T cells between effector and memory populations PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*02:01 B2M MHCI -268 chip0420_828601 6.04 12.98 Chip1 T1D_1 T1D TGTGCAATGAGCGTTAATGCTGGTGGTACTAGCTATGGAAAGCTGACATTT CAMSVNAGGTSYGKLTF TRAV12-3*01 TRAJ52*01 1.0 11.0 TGTGCCAGTAGTATAGGGATCTATGGCTACACCTTC CASSIGIYGYTF TRBV19*01 TRBJ1-2*01 27.0 2038.0 CAMSVNAGGTSYGKLTF_CASSIGIYGYTF 1 4535 M1 FLU 0.7 1250 M1 238 4297 7 InfluenzaA M1 GILGFVFTL transitional T cells between effector and memory populations PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*02:01 B2M MHCI -269 chip0420_205369 14.85 8.77 Chip1 T1D_2 T1D TGCAGCGTGGGGACAGGGGGAACTAATGAAAAACTGTTTTTT CSVGTGGTNEKLFF TRBV29-1*01 TRBJ1-4*01 71.0 3278.0 _CSVGTGGTNEKLFF 638 1619 EBV-BLMF1 EBV 0.6 2531 NEG 220 1399 12 EBV BLMF1 GLCTLVAML effector T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*02:01 B2M MHCI -270 chip0420_182351 9.4 10.39 Chip1 T1D_1 T1D TGTGTGGTTCCTTTGGTGGTGCTACAAACACGCTCATCTTT CVVPLVgt?ATNTLIF TRAV12-1*01 TRAJ32*01 39.0 2098.0 TGCAGTGCTAGAGATGGGGTAGGGAATGGCTACACCTTC CSARDGVGNGYTF TRBV20-1*01 TRBJ1-2*01 30.0 1453.0 CVVPLVgt?ATNTLIF_CSARDGVGNGYTF 1 4726 EBV-BLMF1 EBV 0.86 2531 EBV-BLMF1 233 4493 9 EBV BLMF1 GLCTLVAML effector memory T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*02:01 B2M MHCI -271 chip0420_431894 8.91 7.74 Chip1 T1D_2 T1D TGTGCTTATAGGTCCCTTGGAAATGAGAAATTAACCTTT CAYRSLGNEKLTF TRAV38-1*01 TRAJ48*01 18.0 1000.0 TGCAGCGTGTGCATACTAGCCCAGAATTACAATGAGCAGTTCTTC CSVCILAQNYNEQFF TRBV29-1*01 TRBJ2-1*01 28.0 2032.0 CAYRSLGNEKLTF_CSVCILAQNYNEQFF 1 6192 PGT-178 PGT 0.47 1480 PGT-178 226 5966 8 HomoSapiens PGT LLAGIGTVPI effector memory T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*02:01 B2M MHCI -272 chip0420_623654 -0.83 6.81 Chip1 T1D_1 T1D TGTGCAATGAGCGAAGGGAGCAACTATCAGTTAATCTGG CAMSEGSNYQLIW TRAV12-3*01 TRAJ33*01 29.0 2093.0 CAMSEGSNYQLIW_ 1 5305 PGT-178 PGT 0.48 1480 PGT-178 235 5070 3 HomoSapiens PGT LLAGIGTVPI Naive T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*02:01 B2M MHCI -273 chip0420_83470 16.35 11.44 Chip1 T1D_2 T1D TGCAGCGTGGGGACAGGGGGAACTAATGAAAAACTGTTTTTT CSVGTGGTNEKLFF TRBV29-1*01 TRBJ1-4*01 63.0 2721.0 _CSVGTGGTNEKLFF 638 1845 EBV-BLMF1 EBV 0.67 2531 NEG 233 1612 12 EBV BLMF1 GLCTLVAML effector T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*02:01 B2M MHCI -274 chip0420_609098 11.46 6.74 Chip1 T1D_2 T1D TGTGCCAGCAGCGTAGTAGGCAATGAGCAGTTCTTC CASSVVGNEQFF TRBV9*01 TRBJ2-1*01 21.0 2073.0 _CASSVVGNEQFF 5 4173 EBV-BLMF1 EBV 0.68 2531 EBV-BLMF1 256 3917 10 EBV BLMF1 GLCTLVAML effector memory T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*02:01 B2M MHCI -275 chip0420_78695 10.97 7.07 Chip1 T1D_2 T1D TGTGATCTCCGGCAGAATTTTGTCTTT CDLRQNFVF TRAV29/DV5*01 TRAJ26*01 1.0 28.0 TGTGCCAGCAACTTAGCGGGGAACAATGAGCAGTTCTTT CASNLAGNNEQFF TRBV9*01 TRBJ2-1*01 7.0 375.0 CDLRQNFVF_CASNLAGNNEQFF 1 4569 EBV-BLMF1 EBV 0.81 2531 NEG 228 4341 10 EBV BLMF1 GLCTLVAML effector memory T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*02:01 B2M MHCI -276 chip0420_772121 12.71 7.11 Chip1 T1D_2 T1D TGTGTCATCAACAGCAGCAATACCAGCTATAATTTGATCTTC CVINSSNTSYNLIF TRAV12-1*01 TRAJ12*01 2.0 361.0 TGTGCCAGCAGCTCGGGACTAGTCGCCCCCGGGGAGCTGTTTTTT CASSSGLVAPGELFF TRBV2*01 TRBJ2-2*01 88.0 5705.0 CVINSSNTSYNLIF_CASSSGLVAPGELFF 1 3220 EBV-BLMF1 EBV 0.45 2531 NEG 216 3004 10 EBV BLMF1 GLCTLVAML effector memory T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*02:01 B2M MHCI -277 chip0420_872099 13.23 6.98 Chip1 T1D_2 T1D TGTGCAGCAAGTATAAATCGGGAGAGGCTCAACCCTGGGGAGGCTATACTTT CAASINREag??gcSTLGRLYF TRAV13-1*01 TRAJ18*01 5.0 59.0 TGCGCCAGCAGCCTTAACCAGGGAGGCGAGCAGTACTTC CASSLNQGGEQYF TRBV4-1*01 TRBJ2-7*01 31.0 1965.0 CAASINREag??gcSTLGRLYF_CASSLNQGGEQYF 1 3308 EBV-BLMF1 EBV 0.45 2531 NEG 258 3050 10 EBV BLMF1 GLCTLVAML effector memory T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*02:01 B2M MHCI -278 chip0420_297141 -0.57 10.55 Chip1 T1D_1 T1D TGTGCAATGACCGTACCGAACTTTGGAAATGCGAACTTAGCCTTT CAMTVPNFGNANLAF TRAV12-3*01 TRAJ48*01 4.0 179.0 CAMTVPNFGNANLAF_ 1 5481 PGT-178 PGT 0.63 1480 PGT-178 226 5255 3 HomoSapiens PGT LLAGIGTVPI Naive T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*02:01 B2M MHCI -279 chip0420_575378 8.96 9.52 Chip1 T1D_1 T1D _ 6746 4679 EBV-BLMF1 EBV 0.73 2531 NEG 223 4456 8 EBV BLMF1 GLCTLVAML effector memory T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*02:01 B2M MHCI -280 chip0420_206948 15.68 11.33 Chip1 T1D_2 T1D TGCAGCGTGGGGACAGGGGGAACTAATGAAAAACTGTTTTTT CSVGTGGTNEKLFF TRBV29-1*01 TRBJ1-4*01 29.0 1372.0 _CSVGTGGTNEKLFF 638 2049 EBV-BLMF1 EBV 0.83 2531 NEG 244 1805 12 EBV BLMF1 GLCTLVAML effector T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*02:01 B2M MHCI -281 chip0420_709853 11.64 7.58 Chip1 T1D_2 T1D TGCGCCAGCAGAGCGGGAGCCGGGGATACGCAGTATTTT CASRAGAGDTQYF TRBV10-2*01 TRBJ2-3*01 145.0 8733.0 _CASRAGAGDTQYF 59 3159 EBV-BLMF1 EBV 0.6 2531 NEG 247 2912 10 EBV BLMF1 GLCTLVAML effector memory T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*02:01 B2M MHCI -282 chip0420_803050 13.72 6.99 Chip1 T1D_2 T1D TGCAGCGTGGGGACAGGGGGAACTAATGAAAAACTGTTTTTT CSVGTGGTNEKLFF TRBV29-1*01 TRBJ1-4*01 1.0 68.0 _CSVGTGGTNEKLFF 638 3264 EBV-BLMF1 EBV 0.57 2531 NEG 219 3045 10 EBV BLMF1 GLCTLVAML effector memory T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*02:01 B2M MHCI -283 chip0420_408697 4.93 11.86 Chip1 T1D_2 T1D TGTGCAGCAAGTAGGGGATACAGCACCCTCACCTTT CAASRGYSTLTF TRAV13-1*01 TRAJ11*01 29.0 2111.0 TGTGCCAGCAGCCGTAGCGGGTCCTACAATGAGCAGTTCTTC CASSRSGSYNEQFF TRBV3-1*01 TRBJ2-1*01 6.0 338.0 CAASRGYSTLTF_CASSRSGSYNEQFF 1 4419 PREINS-34-42 INS 0.96 9 PREINS-34-42 220 4199 6 HomoSapiens PREINS HLVEALYLV central memory T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*02:01 B2M MHCI -284 chip0420_355933 10.99 9.43 Chip1 T1D_1 T1D TGTGTGGTGAACGGGGGGGATAGCAGCTATAAATTGATCTTC CVVNGGDSSYKLIF TRAV12-1*01 TRAJ12*01 8.0 714.0 TGTGCCAGCAGTTCGGGACAGGTACTTCCCAATGAGCAGTTCTTC CASSSGQVLPNEQFF TRBV2*01 TRBJ2-1*01 51.0 4162.0 CVVNGGDSSYKLIF_CASSSGQVLPNEQFF 31 4171 EBV-BLMF1 EBV 0.75 2531 NEG 246 3925 9 EBV BLMF1 GLCTLVAML effector memory T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*02:01 B2M MHCI -285 chip0420_645913 13.04 6.57 Chip1 T1D_2 T1D TGTGCAGAGAGTACTTCGGGAGGAAAGCTTATCTTC CAESTSGGKLIF TRAV5*01 TRAJ23*01 18.0 1502.0 TGCAGCGTGGGGACAGGGGGAACTAATGAAAAACTGTTTTTT CSVGTGGTNEKLFF TRBV29-1*01 TRBJ1-4*01 102.0 4670.0 CAESTSGGKLIF_CSVGTGGTNEKLFF 107 3670 EBV-BLMF1 EBV 0.8 2531 NEG 285 3385 10 EBV BLMF1 GLCTLVAML effector memory T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*02:01 B2M MHCI -286 chip0420_572614 12.96 7.14 Chip1 T1D_2 T1D TGTGCCGTGAAGGACACCGACAAGCTCATCTTT CAVKDTDKLIF TRAV8-1*01 TRAJ34*01 1.0 347.0 CGTGCCAGCCGCTTCGTGTGCGACAAAGTGGGGGCTTTCTTT RASRFVCDKVGAFF TRBV7-4*01 TRBJ1-1*01 27.0 1059.0 CAVKDTDKLIF_RASRFVCDKVGAFF 1 3516 EBV-BRLF1 EBV 0.67 1264 NEG 261 3255 10 EBV BRLF1 YVLDHLIVV effector memory T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*02:01 B2M MHCI -287 chip0420_607654 11.44 6.73 Chip1 T1D_2 T1D TGCAGCGTTGACCAAAGGACAGGGCAAAAGAAGAACTATGGCTACACCTTC CSVDQRTGQKKNYGYTF TRBV29-1*01 TRBJ1-2*01 95.0 4819.0 _CSVDQRTGQKKNYGYTF 40 3365 EBV-BLMF1 EBV 0.77 2531 EBV-BLMF1 241 3124 10 EBV BLMF1 GLCTLVAML effector memory T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*02:01 B2M MHCI -288 chip0420_576980 -0.11 8.61 Chip1 T1D_1 T1D TGTGCAATGAGCGGACCTAACTTTGGAAATGAGAAATTAACCTTT CAMSGPNFGNEKLTF TRAV12-3*01 TRAJ48*01 87.0 4663.0 TGTGCCAGCAGCTCCGGACTAGCGGGAGAGCCAAGTAACACCGGGGAGCTGTTTTTT CASSSGLAGEPSNTGELFF TRBV11-3*01 TRBJ2-2*01 38.0 1067.0 CAMSGPNFGNEKLTF_CASSSGLAGEPSNTGELFF 1 6357 PGT-178 PGT 0.54 1480 PGT-178 197 6160 4 HomoSapiens PGT LLAGIGTVPI Naive T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*02:01 B2M MHCI -289 chip0420_577959 -1.49 8.13 Chip1 T1D_1 T1D TGTGCCAGCAGTTTTGGTCAGGGGTTGGAGGGCTACACCTTC CASSFGQGLEGYTF TRBV12-3*01,TRBV12-4*01 TRBJ1-2*01 5.0 195.0 _CASSFGQGLEGYTF 1 6402 ROTA-VP3 ROTA 0.67 41 NEG 203 6199 3 RotavirusA VP3 YLLPGWKL Naive T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*02:01 B2M MHCI -290 chip0420_617357 -0.24 8.26 Chip1 T1D_2 T1D _ 6746 6813 PGT-178 PGT 0.7 1480 PGT-178 206 6607 4 HomoSapiens PGT LLAGIGTVPI Naive T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*02:01 B2M MHCI -291 chip0420_94663 11.44 7.53 Chip1 T1D_2 T1D TGTGCCTTAGGAGGACTGACCTTT CALGGLTF TRAV8-1*01 TRAJ22*01 2.0 318.0 CALGGLTF_ 6 3362 EBV-BRLF1 EBV 1.0 1264 EBV-BRLF1 252 3110 10 EBV BRLF1 YVLDHLIVV effector memory T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*02:01 B2M MHCI -292 chip0420_589541 6.96 10.57 Chip1 T1D_1 T1D _ 6746 5734 EBV-LMP2-FLY EBV 0.94 355 EBV-LMP2-FLY 228 5506 7 EBV LMP2 FLYALALLL transitional T cells between effector and memory populations PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*02:01 B2M MHCI -293 chip0420_535981 5.7 9.71 Chip1 T1D_2 T1D TGTGCCAGCACCCCCGATATTAACACTGAAGCTTTCTTT CASTPDINTEAFF TRAV9-1*01 TRAJ40*01 2.0 4.0 TGTGCCAGCACCCCCGATATTAACACTGAAGCTTTCTTT CASTPDINTEAFF TRBV6-1*01 TRBJ1-1*01 35.0 1364.0 CASTPDINTEAFF_CASTPDINTEAFF 1 3504 EBV-BLMF1 EBV 0.53 2531 NEG 267 3237 6 EBV BLMF1 GLCTLVAML central memory T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*02:01 B2M MHCI -294 chip0420_843321 11.55 11.85 Chip1 T1D_2 T1D TGTGCAGAGGATCACGGTGCCCGACTCATGTTT CAEDHGARLMF TRAV5*01,TRAV23/DV6*01 TRAJ31*01 2.0 94.0 TGCAGCGTTGACCAAAGGACAGGGCAAAAGAAGAACTATGGCTACACCTTC CSVDQRTGQKKNYGYTF TRBV29-1*01 TRBJ1-2*01 70.0 2899.0 CAEDHGARLMF_CSVDQRTGQKKNYGYTF 1 2069 EBV-BLMF1 EBV 1.0 2531 NEG 233 1836 11 EBV BLMF1 GLCTLVAML effector T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*02:01 B2M MHCI -295 chip0420_612365 5.89 12.43 Chip1 T1D_1 T1D TGTGCAGGAAGCGCTGGCTCTAGCAACACAGGCAAACTAATCTTT CAGSAGSSNTGKLIF TRAV27*01 TRAJ37*01 149.0 4142.0 TGTGCCAGTAGTATTCGCTCTGCCTACGAGCAGTACTTC CASSIRSAYEQYF TRBV19*01 TRBJ2-7*01 30.0 2354.0 CAGSAGSSNTGKLIF_CASSIRSAYEQYF 1 5740 M1 FLU 0.88 1250 M1 240 5500 7 InfluenzaA M1 GILGFVFTL transitional T cells between effector and memory populations PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*02:01 B2M MHCI -296 chip0420_607882 13.41 6.69 Chip1 T1D_2 T1D TGCAGCGTGGGGACAGGGGGAACTAATGAAAAACTGTTTTTT CSVGTGGTNEKLFF TRBV29-1*01 TRBJ1-4*01 132.0 7207.0 _CSVGTGGTNEKLFF 638 3797 EBV-BLMF1 EBV 0.83 2531 NEG 248 3549 10 EBV BLMF1 GLCTLVAML effector memory T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*02:01 B2M MHCI -297 chip0420_819409 12.18 7.88 Chip1 T1D_2 T1D TGTGCCGCGAACGACACCGACAAGCTCATCTTT CAANDTDKLIF TRAV8-1*01 TRAJ34*01 2.0 248.0 TGTGCCAGCAGTGAAGGCTTTAATACCTACGAGCAGTACTTC CASSEGFNTYEQYF TRBV6-1*01 TRBJ2-7*01 26.0 852.0 CAANDTDKLIF_CASSEGFNTYEQYF 1 2560 EBV-BRLF1 EBV 1.0 1264 EBV-BRLF1 266 2294 10 EBV BRLF1 YVLDHLIVV effector memory T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*02:01 B2M MHCI -298 chip0420_765148 14.68 10.06 Chip1 T1D_2 T1D TGTGCCGTGAAGAGGAGAGCTGCAGGCAACAAGCTAACTTTT CAVKRRAAGNKLTF TRAV12-2*01 TRAJ17*01 1.0 305.0 TGTGCCAGCACCGACACCCTCCGCCTCATTAACACCGGGGAGCTGTTTTTT CASTDTLRLINTGELFF TRBV28*01 TRBJ2-2*01 26.0 696.0 CAVKRRAAGNKLTF_CASTDTLRLINTGELFF 1 2908 EBV-BRLF1 EBV 0.72 1264 EBV-BRLF1 231 2677 12 EBV BRLF1 YVLDHLIVV effector T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*02:01 B2M MHCI -299 chip0420_237055 13.41 7.38 Chip1 T1D_2 T1D TGTGCCAGCAGTGAAGGCTTTAATACCTACGAGCAGTACTTC CASSEGFNTYEQYF TRBV6-1*01 TRBJ2-7*01 36.0 1548.0 _CASSEGFNTYEQYF 4 2237 EBV-BRLF1 EBV 0.83 1264 EBV-BRLF1 234 2003 10 EBV BRLF1 YVLDHLIVV effector memory T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*02:01 B2M MHCI -300 chip0420_598109 13.69 9.87 Chip1 T1D_1 T1D _ 6746 3922 EBV-BRLF1 EBV 0.96 1264 EBV-BRLF1 231 3691 12 EBV BRLF1 YVLDHLIVV effector T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*02:01 B2M MHCI -301 chip0420_340676 11.48 7.49 Chip1 T1D_2 T1D _ 6746 2811 EBV-BRLF1 EBV 0.92 1264 EBV-BRLF1 243 2568 10 EBV BRLF1 YVLDHLIVV effector memory T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*02:01 B2M MHCI -302 chip0420_818632 11.99 10.58 Chip1 T1D_2 T1D TGTGCCAGCAGCTCGGGACTAGTCGCCCCCGGGGAGCTGTTTTTT CASSSGLVAPGELFF TRBV2*01 TRBJ2-2*01 30.0 1376.0 _CASSSGLVAPGELFF 133 4158 EBV-BLMF1 EBV 0.56 2531 NEG 217 3941 9 EBV BLMF1 GLCTLVAML effector memory T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*02:01 B2M MHCI -303 chip0420_661030 13.54 10.12 Chip1 T1D_2 T1D TGTGCTCTAAAAAACACCGGCCAGCTCCTCTTT CALKNTGQLLF TRAV16*01 TRAJ34*01 7.0 1085.0 TGTGCCAGCAGTTTATCAGTACTCTCCTACAATGAGCAGTTCTTC CASSLSVLSYNEQFF TRBV27*01 TRBJ2-1*01 33.0 2054.0 CALKNTGQLLF_CASSLSVLSYNEQFF 1 2429 EBV-BRLF1 EBV 0.97 1264 EBV-BRLF1 236 2193 12 EBV BRLF1 YVLDHLIVV effector T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*02:01 B2M MHCI -304 chip0420_336705 12.86 6.64 Chip1 T1D_2 T1D TGTGCAGCATACGCAGGCAACATGCTCACCTTT CAAYAGNMLTF TRAV29/DV5*01 TRAJ39*01 5.0 612.0 TGCGCCAGCAGGATGGGGGCCGGGGATACGCAGTATTTT CASRMGAGDTQYF TRBV10-2*01 TRBJ2-3*01 66.0 3950.0 CAAYAGNMLTF_CASRMGAGDTQYF 21 3563 EBV-BLMF1 EBV 0.75 2531 NEG 251 3312 10 EBV BLMF1 GLCTLVAML effector memory T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*02:01 B2M MHCI -305 chip0420_875322 12.81 7.1 Chip1 T1D_2 T1D _ 6746 2110 EBV-BLMF1 EBV 0.47 2531 NEG 255 1855 10 EBV BLMF1 GLCTLVAML effector memory T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*02:01 B2M MHCI -306 chip0420_708028 6.12 12.8 Chip1 T1D_1 T1D TGTGCAGGGAATTATGGAGGAAGCCAAGGAAATCTCATCTTT CAGNYGGSQGNLIF TRAV25*01 TRAJ42*01 24.0 2031.0 TGTGCCAGTAGTAAGAGAAGCACAGATACGCAGTATTTT CASSKRSTDTQYF TRBV19*01 TRBJ2-3*01 18.0 853.0 CAGNYGGSQGNLIF_CASSKRSTDTQYF 1 5128 M1 FLU 0.8 1250 M1 231 4897 7 InfluenzaA M1 GILGFVFTL transitional T cells between effector and memory populations PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*02:01 B2M MHCI -307 chip0420_164083 16.01 11.44 Chip1 T1D_2 T1D TGTGCAATGAGAGAGGGCACGGGCAACTTCAACAAATTTTACTCT CAMREGTGNFNKFYS TRAV14/DV4*01 TRAJ21*01 67.0 2109.0 TGTGCCAGCAAGGGGATCGATGGCTACACCTTC CASKGIDGYTF TRBV13*01 TRBJ1-2*01 19.0 1122.0 CAMREGTGNFNKFYS_CASKGIDGYTF 1 1800 EBV-BRLF1 EBV 0.89 1264 EBV-BRLF1 209 1591 12 EBV BRLF1 YVLDHLIVV effector T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*02:01 B2M MHCI -308 chip0420_292072 14.69 12.32 Chip1 T1D_2 T1D _ 6746 1790 EBV-BRLF1 EBV 0.67 1264 NEG 203 1587 12 EBV BRLF1 YVLDHLIVV effector T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*02:01 B2M MHCI -309 chip0420_108423 9.23 9.65 Chip1 T1D_1 T1D TGTGCCAGCAGCCCAGTTAGCGGGTCAACCTACGAGCAGTACTTC CASSPVSGSTYEQYF TRBV3-1*01 TRBJ2-7*01 30.0 2068.0 _CASSPVSGSTYEQYF 80 5321 EBV-BLMF1 EBV 1.0 2531 EBV-BLMF1 225 5096 8 EBV BLMF1 GLCTLVAML effector memory T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*02:01 B2M MHCI -310 chip0420_479462 13.1 8.23 Chip1 T1D_2 T1D TGCGCCAGCAGGATGGGGGCCGGGGATACGCAGTATTTT CASRMGAGDTQYF TRBV10-2*01 TRBJ2-3*01 29.0 2120.0 _CASRMGAGDTQYF 90 2137 EBV-BLMF1 EBV 0.67 2531 NEG 229 1908 10 EBV BLMF1 GLCTLVAML effector memory T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*02:01 B2M MHCI -311 chip0420_74124 11.7 6.83 Chip1 T1D_2 T1D TGCAGCGTGGGAACAGGGGGAACTAATGAAAAACTGTTTTTT CSVGTGGTNEKLFF TRBV29-1*01 TRBJ1-4*01 37.0 1685.0 _CSVGTGGTNEKLFF 638 4394 EBV-BLMF1 EBV 0.55 2531 NEG 226 4168 10 EBV BLMF1 GLCTLVAML effector memory T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*02:01 B2M MHCI -312 chip0420_769030 9.97 9.57 Chip1 T1D_2 T1D TGTGTGGTGAACGGCAGGGATAGCAGCTATAAATTGATCTTC CVVNGRDSSYKLIF TRAV12-1*01 TRAJ12*01 59.0 2556.0 TGTGCCAGCAGCTCGGGACTAGTCGCCCCCGGGGAGCTGTTTTTT CASSSGLVAPGELFF TRBV2*01 TRBJ2-2*01 49.0 3297.0 CVVNGRDSSYKLIF_CASSSGLVAPGELFF 98 5085 EBV-BLMF1 EBV 0.75 2531 NEG 230 4855 9 EBV BLMF1 GLCTLVAML effector memory T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*02:01 B2M MHCI -313 chip0420_793885 9.37 9.82 Chip1 T1D_1 T1D TGTGCAGAGAGTACAAGTGGGGGAAAGCTTATCTTC CAESTSGGKLIF TRAV5*01 TRAJ23*01 24.0 2043.0 TGCAGCGTCGGCTCCAGGGGAACTAATGAAAAACTGTTTTTT CSVGSRGTNEKLFF TRBV29-1*01 TRBJ1-4*01 185.0 10018.0 CAESTSGGKLIF_CSVGSRGTNEKLFF 19 4335 EBV-BLMF1 EBV 0.55 2531 NEG 205 4130 8 EBV BLMF1 GLCTLVAML effector memory T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*02:01 B2M MHCI -314 chip0420_87757 13.64 7.86 Chip1 T1D_2 T1D CTGTGCCAGCAGCGTAGTAGGCAATGAGCAGTTCTTC LCQQRS??aGNEQFF TRBV9*01 TRBJ2-1*01 19.0 2056.0 _LCQQRS??aGNEQFF 1 2526 EBV-BLMF1 EBV 0.6 2531 EBV-BLMF1 235 2291 10 EBV BLMF1 GLCTLVAML effector memory T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*02:01 B2M MHCI -315 chip0420_572383 5.91 12.74 Chip1 T1D_1 T1D TGTGCCAGTAGTGTCAGGGCAGGAGAGACCCAGTACTTC CASSVRAGETQYF TRBV19*01 TRBJ2-5*01 56.0 2932.0 _CASSVRAGETQYF 23 5722 M1 FLU 0.78 1250 M1 230 5492 7 InfluenzaA M1 GILGFVFTL transitional T cells between effector and memory populations PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*02:01 B2M MHCI -316 chip0420_469339 15.21 8.61 Chip1 T1D_1 T1D TGCGGCACAGAGGAGCCTAACGACTACAAGCTCAGCTTT CGTEEPNDYKLSF TRAV30*01 TRAJ20*01 49.0 2082.0 CGTEEPNDYKLSF_ 22 2279 EBV-BLMF1 EBV 0.67 2531 NEG 258 2021 12 EBV BLMF1 GLCTLVAML effector T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*02:01 B2M MHCI -317 chip0420_183780 14.03 7.33 Chip1 T1D_2 T1D GGTGCTCTTAGAAAAACCGACAAGCTCATCTTT GALRKTDKLIF TRAV16*01 TRAJ34*01 5.0 480.0 TGTGCCAGCAGTTTATCAGTACTCTCCTACAATGAGCAGTTCTTC CASSLSVLSYNEQFF TRBV27*01 TRBJ2-1*01 74.0 4238.0 GALRKTDKLIF_CASSLSVLSYNEQFF 1 2927 EBV-BRLF1 EBV 0.88 1264 EBV-BRLF1 233 2694 10 EBV BRLF1 YVLDHLIVV effector memory T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*02:01 B2M MHCI -318 chip0420_35512 9.11 9.62 Chip1 T1D_1 T1D TGCAGCGTCGGCTCCAGGGGAACTAATGAAAAACTGTTTTTT CSVGSRGTNEKLFF TRBV29-1*01 TRBJ1-4*01 42.0 1574.0 _CSVGSRGTNEKLFF 283 6017 EBV-BLMF1 EBV 0.75 2531 NEG 251 5766 8 EBV BLMF1 GLCTLVAML effector memory T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*02:01 B2M MHCI -319 chip0420_374145 15.98 11.5 Chip1 T1D_2 T1D TGTGCTGTGAGAGACGACAGAGATGACAAGATCATCTTT CAVRDDRDDKIIF TRAV3*01 TRAJ30*01 61.0 3288.0 TGTGCCAGCAGCTTAAACGCGGGAGAGTGGTATGGCTACACCTTC CASSLNAGEWYGYTF TRBV11-2*01 TRBJ1-2*01 15.0 467.0 CAVRDDRDDKIIF_CASSLNAGEWYGYTF 2 1986 EBV-BLMF1 EBV 0.71 2531 NEG 234 1752 12 EBV BLMF1 GLCTLVAML effector T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*02:01 B2M MHCI -320 chip0420_196807 10.46 10.9 Chip1 T1D_2 T1D TGTGCCAGCAACTTAGCGGGGAACAATGAGCAGTTCTTC CASNLAGNNEQFF TRBV9*01 TRBJ2-1*01 34.0 2378.0 _CASNLAGNNEQFF 15 2849 EBV-BLMF1 EBV 0.5 2531 NEG 233 2616 9 EBV BLMF1 GLCTLVAML effector memory T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*02:01 B2M MHCI -321 chip0420_149533 13.76 7.7 Chip1 T1D_1 T1D TGCGGCCCAGAGGAACCTAACGACTACAAGCTCAGCTTT CGPEEPNDYKLSF TRAV30*01 TRAJ20*01 17.0 1078.0 TGTGCCAGCAGCCCGGGACAGCTATCGAACACCGGGGAGCTGTTTTTT CASSPGQLSNTGELFF TRBV9*01 TRBJ2-2*01 11.0 664.0 CGPEEPNDYKLSF_CASSPGQLSNTGELFF 4 3223 EBV-BLMF1 EBV 0.69 2531 NEG 258 2965 10 EBV BLMF1 GLCTLVAML effector memory T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*02:01 B2M MHCI -322 chip0420_30414 11.27 7.76 Chip1 T1D_2 T1D TGCAGCGTGGGGACAGGGGGAACTAATGAAAAACTGTTTTTT CSVGTGGTNEKLFF TRBV29-1*01 TRBJ1-4*01 146.0 5543.0 _CSVGTGGTNEKLFF 638 4208 EBV-BLMF1 EBV 0.75 2531 NEG 213 3995 10 EBV BLMF1 GLCTLVAML effector memory T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*02:01 B2M MHCI -323 chip0420_198523 10.52 7.16 Chip1 T1D_2 T1D TGTGCAGAGAGTACTTCGGGAGGAAAGCTTATCTTC CAESTSGGKLIF TRAV5*01 TRAJ23*01 35.0 2179.0 TGCAGCGTGGGGACAGGGGGAACTAATGAAAAACTGTTTTTT CSVGTGGTNEKLFF TRBV29-1*01 TRBJ1-4*01 168.0 7440.0 CAESTSGGKLIF_CSVGTGGTNEKLFF 107 5438 EBV-BLMF1 EBV 0.8 2531 NEG 211 5227 10 EBV BLMF1 GLCTLVAML effector memory T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*02:01 B2M MHCI -324 chip0420_191693 9.33 7.81 Chip1 T1D_2 T1D TGTGTGGTGAACGGCAGGGATAGCAGCTATAAATTGATCTTC CVVNGRDSSYKLIF TRAV12-1*01 TRAJ12*01 33.0 2135.0 TGTGCCAGCAGCTCGGGACTAGTCGCCCCCGGGGAGCTGTTTTTT CASSSGLVAPGELFF TRBV2*01 TRBJ2-2*01 95.0 6133.0 CVVNGRDSSYKLIF_CASSSGLVAPGELFF 98 4947 EBV-BLMF1 EBV 0.67 2531 NEG 238 4709 8 EBV BLMF1 GLCTLVAML effector memory T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*02:01 B2M MHCI -325 chip0420_827705 14.7 9.24 Chip1 T1D_2 T1D TGTGCCAGCAGTGAAGGCTTTAATACCTACGAGCAGTACTTC CASSEGFNTYEQYF TRBV6-1*01 TRBJ2-7*01 14.0 650.0 _CASSEGFNTYEQYF 4 4367 EBV-BRLF1 EBV 1.0 1264 EBV-BRLF1 240 4127 12 EBV BRLF1 YVLDHLIVV effector T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*02:01 B2M MHCI -326 chip0420_821860 13.34 6.99 Chip1 T1D_2 T1D TGCAGCGTGGGGACAGGGGGAACTAATGAAAAACTGTTTTTT CSVGTGGTNEKLFF TRBV29-1*01 TRBJ1-4*01 127.0 5794.0 _CSVGTGGTNEKLFF 638 3285 EBV-BLMF1 EBV 0.83 2531 NEG 239 3046 10 EBV BLMF1 GLCTLVAML effector memory T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*02:01 B2M MHCI -327 chip0420_117353 5.93 13.35 Chip1 T1D_1 T1D TGTGGCACTCAAGAGAATGACAGCTGGGGGAAATTGCAGTTT CGTQENDSWGKLQF TRAV30*01 TRAJ24*01 1.0 138.0 TGTGCCAGTAGTGTCAGGGCAGGAGAGACCCAGTACTTC CASSVRAGETQYF TRBV19*01 TRBJ2-5*01 59.0 3230.0 CGTQENDSWGKLQF_CASSVRAGETQYF 9 5078 M1 FLU 0.7 1250 M1 212 4866 7 InfluenzaA M1 GILGFVFTL transitional T cells between effector and memory populations PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*02:01 B2M MHCI -328 chip0420_100395 16.0 10.98 Chip1 T1D_2 T1D TGCAGCGTGGGGACAGGGGGAACTAATGAAAAACTGTTTTTT CSVGTGGTNEKLFF TRBV29-1*01 TRBJ1-4*01 78.0 4244.0 _CSVGTGGTNEKLFF 638 2059 EBV-BLMF1 EBV 0.5 2531 NEG 225 1834 12 EBV BLMF1 GLCTLVAML effector T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*02:01 B2M MHCI -329 chip0420_594434 13.05 8.43 Chip1 T1D_2 T1D TGTGCCAGTAGGGCCCTCTTGGGAAGCAATCAGCCCCAGCATTTT CASRALLGSNQPQHF TRBV19*01 TRBJ1-5*01 16.0 391.0 _CASRALLGSNQPQHF 8 1971 EBV-BRLF1 EBV 0.89 1264 NEG 222 1749 10 EBV BRLF1 YVLDHLIVV effector memory T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*02:01 B2M MHCI -330 chip0420_303889 12.2 10.81 Chip1 T1D_2 T1D TGTGCAGAGAGTACTTCGGGAGGAAAGCTTATCTTC CAESTSGGKLIF TRAV5*01 TRAJ23*01 1.0 13.0 TGCAGCGTGGGGACAGGGGGAACTAATGAAAAACTGTTTTTT CSVGTGGTNEKLFF TRBV29-1*01 TRBJ1-4*01 72.0 3030.0 CAESTSGGKLIF_CSVGTGGTNEKLFF 107 2885 EBV-BLMF1 EBV 0.57 2531 NEG 226 2659 9 EBV BLMF1 GLCTLVAML effector memory T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*02:01 B2M MHCI -331 chip0420_469222 12.87 6.84 Chip1 T1D_2 T1D TGCGGCCCCGCGGCACCTAACGACTACAAGCTCAGCTTT CGPAAPNDYKLSF TRAV30*01 TRAJ20*01 5.0 278.0 TGCAGCGTGGGGACAGGGGGAACTAATGAAAAACTGTTTTTT CSVGTGGTNEKLFF TRBV29-1*01 TRBJ1-4*01 279.0 9980.0 CGPAAPNDYKLSF_CSVGTGGTNEKLFF 1 2461 EBV-BLMF1 EBV 1.0 2531 NEG 277 2184 10 EBV BLMF1 GLCTLVAML effector memory T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*02:01 B2M MHCI -332 chip0420_386036 15.28 8.64 Chip1 T1D_2 T1D _ 6746 2962 EBV-BRLF1 EBV 0.93 1264 NEG 224 2738 12 EBV BRLF1 YVLDHLIVV effector T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*02:01 B2M MHCI -333 chip0420_450610 14.01 9.08 Chip1 T1D_2 T1D TGTGCCGTGAATGGAAATGACAAGATCATCTTT CAVNGNDKIIF TRAV8-1*01 TRAJ30*01 37.0 2197.0 CAVNGNDKIIF_ 1 4324 EBV-BRLF1 EBV 0.87 1264 NEG 273 4051 10 EBV BRLF1 YVLDHLIVV effector memory T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*02:01 B2M MHCI -334 chip0420_816389 9.43 9.63 Chip1 T1D_1 T1D TGCAGCGTCGGCTCCAGGGGAACTAATGAAAAACTGTTTTTT CSVGSRGTNEKLFF TRBV29-1*01 TRBJ1-4*01 134.0 7886.0 _CSVGSRGTNEKLFF 283 3211 EBV-BLMF1 EBV 0.4 2531 NEG 238 2973 8 EBV BLMF1 GLCTLVAML effector memory T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*02:01 B2M MHCI -335 chip0420_609636 5.71 9.11 Chip1 T1D_1 T1D TGTGCCAGCAGTGTGCAGGGAGGTAACTATGGCTACACCTTC CASSVQGGNYGYTF TRBV6-1*01 TRBJ1-2*01 20.0 778.0 _CASSVQGGNYGYTF 5 6541 EBV-LMP2-FLY EBV 0.77 355 EBV-LMP2-FLY 222 6319 6 EBV LMP2 FLYALALLL central memory T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*02:01 B2M MHCI -336 chip0420_540176 12.35 10.95 Chip1 T1D_1 T1D TGCAGCGTCGGCTCCAGGGGAACTAATGAAAAACTGTTTTTT CSVGSRGTNEKLFF TRBV29-1*01 TRBJ1-4*01 116.0 6401.0 _CSVGSRGTNEKLFF 283 2738 EBV-BLMF1 EBV 0.83 2531 NEG 228 2510 9 EBV BLMF1 GLCTLVAML effector memory T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*02:01 B2M MHCI -337 chip0420_195602 -0.7 6.71 Chip1 T1D_1 T1D TGTGCCGTGAGGATGTATTCAGGAGGAGGTGCTGACGGACTCACCTTT CAVRMYSGGGADGLTF TRAV12-2*01 TRAJ45*01 81.0 2843.0 TGTGCCAGCAGCCCAGGGGACTTCCAAGAGACCCAGTACTTC CASSPGDFQETQYF TRBV9*01 TRBJ2-5*01 1.0 55.0 CAVRMYSGGGADGLTF_CASSPGDFQETQYF 1 5982 MART1-ALA MART1 0.44 269 MART1-ALA 232 5750 3 HomoSapiens MART1 ALAGIGILTV Naive T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*02:01 B2M MHCI -338 chip0420_351531 8.98 11.12 Chip1 T1D_2 T1D TGCAGCGTGGGGACAGGGGGAACTAATGAAAAACTGTTTTTT CSVGTGGTNEKLFF TRBV29-1*01 TRBJ1-4*01 82.0 3993.0 _CSVGTGGTNEKLFF 638 4269 EBV-BLMF1 EBV 1.0 2531 NEG 209 4060 9 EBV BLMF1 GLCTLVAML effector memory T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*02:01 B2M MHCI -339 chip0420_178821 11.51 9.12 Chip1 T1D_2 T1D _ 6746 4306 EBV-BLMF1 EBV 0.59 2531 NEG 216 4090 10 EBV BLMF1 GLCTLVAML effector memory T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*02:01 B2M MHCI -340 chip0420_109837 6.31 12.66 Chip1 T1D_1 T1D TGTGCCAGTAGTACCGGGCAGCCCCAGCATTTT CASSTGQPQHF TRBV19*01 TRBJ1-5*01 5.0 603.0 _CASSTGQPQHF 3 5832 M1 FLU 0.77 1250 M1 221 5611 7 InfluenzaA M1 GILGFVFTL transitional T cells between effector and memory populations PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*02:01 B2M MHCI -341 chip0420_286485 12.94 6.88 Chip1 T1D_2 T1D TGCGCAGAGAAGGCCTGGGGGTTACCAGCAAGTTACCTTT CAEKAWgg??gtYQQVTF TRAV5*01 TRAJ13*01 41.0 2467.0 TGCAGCGTGGGGACAGGGGGAACTAATGAAAAACTGTTTTTT CSVGTGGTNEKLFF TRBV29-1*01 TRBJ1-4*01 94.0 3897.0 CAEKAWgg??gtYQQVTF_CSVGTGGTNEKLFF 1 3237 EBV-BLMF1 EBV 0.54 2531 NEG 225 3012 10 EBV BLMF1 GLCTLVAML effector memory T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*02:01 B2M MHCI -342 chip0420_363869 6.57 13.22 Chip1 T1D_1 T1D _ 6746 5070 M1 FLU 0.91 1250 M1 206 4864 7 InfluenzaA M1 GILGFVFTL transitional T cells between effector and memory populations PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*02:01 B2M MHCI -343 chip0420_872360 13.56 8.06 Chip1 T1D_2 T1D TGTGCTTCCCTAACCCCGGGGGCTTCCAAGATAATCTTT CASLTPGASKIIF TRAV8-6*01 TRAJ3*01 3.0 501.0 TGTGCCAGCAGCTCGGGACTAGTCGCCCCCGGGGAGCTGTTTTTT CASSSGLVAPGELFF TRBV2*01 TRBJ2-2*01 131.0 7242.0 CASLTPGASKIIF_CASSSGLVAPGELFF 38 4444 EBV-BLMF1 EBV 1.0 2531 NEG 217 4227 10 EBV BLMF1 GLCTLVAML effector memory T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*02:01 B2M MHCI -344 chip0420_507026 13.57 10.29 Chip1 T1D_2 T1D TGCAGCGTGGGGACAGGGGGAACTAATGAAAAACTGTTTTTT CSVGTGGTNEKLFF TRBV29-1*01 TRBJ1-4*01 138.0 6215.0 _CSVGTGGTNEKLFF 638 3245 EBV-BLMF1 EBV 0.67 2531 NEG 220 3025 12 EBV BLMF1 GLCTLVAML effector T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*02:01 B2M MHCI -345 chip0420_450851 15.22 9.01 Chip1 T1D_1 T1D TGCGGCACAGAGGAACCTAACGACTACAAGCTCAGCTTT CGTEEPNDYKLSF TRAV30*01 TRAJ20*01 40.0 2120.0 CGTEEPNDYKLSF_ 22 3009 EBV-BLMF1 EBV 0.5 2531 NEG 230 2779 12 EBV BLMF1 GLCTLVAML effector T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*02:01 B2M MHCI -346 chip0420_203142 -3.56 8.86 Chip1 T1D_1 T1D TGTGCCGTGCGGGGGGCCAGACTCATGTTT CAVRGARLMF TRAV12-2*01 TRAJ31*01 15.0 1518.0 TGCGCCAGCAGTCAATGGGTGCGGCGAAGAAGCCAAGAGACCCAGTACTTC CASSQWVRRRSQETQYF TRBV4-3*01 TRBJ2-5*01 60.0 2342.0 CAVRGARLMF_CASSQWVRRRSQETQYF 1 4959 ZNT8-314-322 ZNT8 0.68 16 ZNT8-314-322 213 4746 2 HomoSapiens ZNT8 ILSAHVATA Naive T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*02:01 B2M MHCI -347 chip0420_620638 9.05 9.92 Chip1 T1D_2 T1D TGCAGCGTGGGGACAGGGGGAACTAATGAAAAACTGTTTTTT CSVGTGGTNEKLFF TRBV29-1*01 TRBJ1-4*01 62.0 2754.0 _CSVGTGGTNEKLFF 638 3917 EBV-BLMF1 EBV 0.78 2531 NEG 224 3693 8 EBV BLMF1 GLCTLVAML effector memory T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*02:01 B2M MHCI -348 chip0420_822226 13.66 13.03 Chip1 T1D_2 T1D _ 6746 1891 EBV-BRLF1 EBV 1.0 1264 NEG 208 1683 12 EBV BRLF1 YVLDHLIVV effector T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*02:01 B2M MHCI -349 chip0420_589477 10.71 10.56 Chip1 T1D_1 T1D TGTGCCAGCAGCCAAAGCCCGGGTGGTACGCAGTATTTT CASSQSPGGTQYF TRBV14*01 TRBJ2-3*01 11.0 285.0 _CASSQSPGGTQYF 94 4202 EBV-BLMF1 EBV 0.73 2531 NEG 236 3966 9 EBV BLMF1 GLCTLVAML effector memory T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*02:01 B2M MHCI -350 chip0420_702996 12.1 10.75 Chip1 T1D_2 T1D TGCAGCGTGGGGACAGGGGGAACTAATGAAAAACTGTTTTTT CSVGTGGTNEKLFF TRBV29-1*01 TRBJ1-4*01 14.0 544.0 _CSVGTGGTNEKLFF 638 4421 EBV-BLMF1 EBV 0.57 2531 NEG 223 4198 9 EBV BLMF1 GLCTLVAML effector memory T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*02:01 B2M MHCI -351 chip0420_804721 11.68 8.13 Chip1 T1D_2 T1D TGTGCCAGCAGCCCCTCGACTAGCGGGAGTGGGGAGACCCAGTACTTC CASSPSTSGSGETQYF TRBV3-1*01 TRBJ2-5*01 52.0 4351.0 _CASSPSTSGSGETQYF 18 2369 EBV-BRLF1 EBV 0.92 1264 EBV-BRLF1 237 2132 10 EBV BRLF1 YVLDHLIVV effector memory T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*02:01 B2M MHCI -352 chip0420_325040 11.43 6.79 Chip1 T1D_2 T1D TGCGCCAGCAGAGCGGGAGCCGGGGATACGCAGTATTTT CASRAGAGDTQYF TRBV10-2*01 TRBJ2-3*01 21.0 1161.0 _CASRAGAGDTQYF 59 3732 EBV-BLMF1 EBV 0.58 2531 NEG 222 3510 10 EBV BLMF1 GLCTLVAML effector memory T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*02:01 B2M MHCI -353 chip0420_589491 12.74 6.99 Chip1 T1D_1 T1D TGTGCCCGCGGGGGCCTGTCAGGGGGCGGGAGTGAAGCTTTCTTT CARGGLSGGGSEAFF TRAV24*01 TRAJ40*01 3.0 15.0 TGTGCCAGCAGGGGCCTGACAGGGGGCGGGAGTGAAGCTTTCTTT CASRGLTGGGSEAFF TRBV28*01 TRBJ1-1*01 88.0 3868.0 CARGGLSGGGSEAFF_CASRGLTGGGSEAFF 1 2772 EBV-BRLF1 EBV 0.71 1264 EBV-BRLF1 248 2524 10 EBV BRLF1 YVLDHLIVV effector memory T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*02:01 B2M MHCI -354 chip0420_208994 8.74 10.5 Chip1 T1D_2 T1D TGTGTGGTGAACCCCCCCCACGACTACAAGCTCAGCTTT CVVNPPHDYKLSF TRAV12-1*01 TRAJ20*01 2.0 241.0 CVVNPPHDYKLSF_ 1 3246 EBV-BLMF1 EBV 0.73 2531 NEG 244 3002 8 EBV BLMF1 GLCTLVAML effector memory T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*02:01 B2M MHCI -355 chip0420_331547 15.75 9.97 Chip1 T1D_2 T1D TGTGTGGTGAACGGCAGGGATAGCAGCTATAAATTGATCTTC CVVNGRDSSYKLIF TRAV12-1*01 TRAJ12*01 4.0 448.0 TGTGCCAGCAGCTCGGGACTAGTCGCCCCCGGGGAGCTGTTTTTT CASSSGLVAPGELFF TRBV2*01 TRBJ2-2*01 140.0 7801.0 CVVNGRDSSYKLIF_CASSSGLVAPGELFF 98 3797 EBV-BLMF1 EBV 0.47 2531 NEG 216 3581 12 EBV BLMF1 GLCTLVAML effector T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*02:01 B2M MHCI -356 chip0420_593829 13.92 10.57 Chip1 T1D_2 T1D TGTGCAGAGAGTACTTCGGGAGGAAAGCTTATCTTC CAESTSGGKLIF TRAV5*01 TRAJ23*01 64.0 4286.0 TGCAGCGTGGGGACAGGGGGAACTAATGAAAAACTGTTTTTT CSVGTGGTNEKLFF TRBV29-1*01 TRBJ1-4*01 145.0 6232.0 CAESTSGGKLIF_CSVGTGGTNEKLFF 107 3616 EBV-BLMF1 EBV 0.71 2531 NEG 227 3389 12 EBV BLMF1 GLCTLVAML effector T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*02:01 B2M MHCI -357 chip0420_281105 10.54 10.31 Chip1 T1D_1 T1D TGTGCCAGCAGCACGGGACAGCTATCGAACACCGGGGAGCTGTTTTTT CASSTGQLSNTGELFF TRBV9*01 TRBJ2-2*01 26.0 1744.0 _CASSTGQLSNTGELFF 82 3666 EBV-BLMF1 EBV 0.67 2531 EBV-BLMF1 190 3476 9 EBV BLMF1 GLCTLVAML effector memory T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*02:01 B2M MHCI -358 chip0420_28492 8.43 7.75 Chip1 T1D_1 T1D TGTGCCAGCAGCCAAAGCCCGGGTGGTACGCAGTATTTT CASSQSPGGTQYF TRBV14*01 TRBJ2-3*01 18.0 657.0 _CASSQSPGGTQYF 94 3066 EBV-BLMF1 EBV 0.88 2531 NEG 259 2807 8 EBV BLMF1 GLCTLVAML effector memory T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*02:01 B2M MHCI -359 chip0420_645871 5.61 11.37 Chip1 T1D_1 T1D _ 6746 10667 M1 FLU 0.5 1250 M1 252 10415 6 InfluenzaA M1 GILGFVFTL central memory T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*02:01 B2M MHCI -360 chip0420_362723 11.75 10.09 Chip1 T1D_1 T1D TGTGCCGTGAAGGACACCGACAAGCTCATCTTT CAVKDTDKLIF TRAV8-1*01 TRAJ34*01 26.0 2230.0 CAVKDTDKLIF_ 56 5044 EBV-BRLF1 EBV 0.94 1264 EBV-BRLF1 223 4821 9 EBV BRLF1 YVLDHLIVV effector memory T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*02:01 B2M MHCI -361 chip0420_8425 8.52 10.51 Chip1 T1D_2 T1D TGTGCCGTGCCGGACACCGACAAGCTCATCTTT CAVPDTDKLIF TRAV8-1*01 TRAJ34*01 25.0 2118.0 CAVPDTDKLIF_ 1 4455 EBV-BRLF1 EBV 0.95 1264 EBV-BRLF1 217 4238 8 EBV BRLF1 YVLDHLIVV effector memory T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*02:01 B2M MHCI -362 chip0420_130293 9.15 9.73 Chip1 T1D_1 T1D CGCGCTCTCCCTCCCACCCCCCAGCTCCTCTCT RALPPTPQLLS TRAV9-2*01 TRAJ34*01 8.0 30.0 TGTGCTCTCTAGAACACCGACACGCTCATCTTT CAL*NTDTLIF TRAV9-2*01 TRAJ34*01 9.0 1732.0 0.5 TGTGCCAGCAGCCCAGTTAGCGGGTCAACCTACGAGCAGTACTTC CASSPVSGSTYEQYF TRBV3-1*01 TRBJ2-7*01 59.0 3441.0 RALPPTPQLLS_CASSPVSGSTYEQYF 1 3893 EBV-BLMF1 EBV 0.83 2531 NEG 222 3671 8 EBV BLMF1 GLCTLVAML effector memory T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*02:01 B2M MHCI -363 chip0420_847041 6.24 10.1 Chip1 T1D_1 T1D TGTGCCGTGCCTGGGTTTTCTGGTGGCTACAATAAGCTGATTTTT CAVPGFSGGYNKLIF TRAV8-1*01 TRAJ4*01 39.0 2011.0 CAVPGFSGGYNKLIF_ 1 5821 EBV-LMP1-1 EBV 0.93 237 EBV-LMP1-1 206 5615 6 EBV LMP1 YLLEMLWRL central memory T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*02:01 B2M MHCI -364 chip0420_683292 13.52 10.32 Chip1 T1D_2 T1D TGCAGCGTGGGGACAGGGGGCAACTACTGAACAACTGTTTTCT CSVGTGG??aTTEQLFS TRBV29-1*01 TRBJ1-4*01 8.0 496.0 _CSVGTGG??aTTEQLFS 1 2658 EBV-BLMF1 EBV 0.45 2531 NEG 192 2466 12 EBV BLMF1 GLCTLVAML effector T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*02:01 B2M MHCI -365 chip0420_459919 15.4 11.11 Chip1 T1D_1 T1D TGCGGCCCAGCGGAACCTAACGACTACAAGCTCAGCTTT CGPAEPNDYKLSF TRAV30*01 TRAJ20*01 31.0 2135.0 TGTGCCAGCCGCCCGGGACAGCTATCGAACACCGGGGAGCTGTTTTTT CASRPGQLSNTGELFF TRBV9*01 TRBJ2-2*01 2.0 73.0 CGPAEPNDYKLSF_CASRPGQLSNTGELFF 1 2343 EBV-BLMF1 EBV 0.71 2531 NEG 219 2124 12 EBV BLMF1 GLCTLVAML effector T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*02:01 B2M MHCI -366 chip0420_43164 8.82 9.35 Chip1 T1D_2 T1D TGCGCCAGCAGGATGGGGGCCGGGGATACGCAGTATTTT CASRMGAGDTQYF TRBV10-2*01 TRBJ2-3*01 29.0 1246.0 _CASRMGAGDTQYF 90 3781 EBV-BLMF1 EBV 1.0 2531 NEG 228 3553 8 EBV BLMF1 GLCTLVAML effector memory T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*02:01 B2M MHCI -367 chip0420_508498 -1.36 6.86 Chip1 T1D_1 T1D _ 6746 6167 CVB3-P3A CVB 0.62 77 NEG 233 5934 3 CoxsackievirusB P3A GIIYIIYKL Naive T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*02:01 B2M MHCI -368 chip0420_835590 15.57 10.27 Chip1 T1D_2 T1D TGTGCCAGCAGCCTAGAGGCTTCCTACGAGCAGTACTTC CASSLEASYEQYF TRBV7-8*01 TRBJ2-7*01 11.0 627.0 _CASSLEASYEQYF 2 3039 MART1-A28L MART1 0.86 84 MART1-A28L 239 2800 12 HomoSapiens MART1 ALGIGILTV effector T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*02:01 B2M MHCI -369 chip0420_361220 -0.06 8.75 Chip1 T1D_2 T1D TGTGCCAGCAAGATGGGTTTGGACGCCTCCTACAATGAGCAGTTCTTC CASKMGLDASYNEQFF TRBV27*01 TRBJ2-1*01 51.0 2570.0 _CASKMGLDASYNEQFF 1 4618 MART1-ALA MART1 0.75 269 MART1-ALA 217 4401 4 HomoSapiens MART1 ALAGIGILTV Naive T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*02:01 B2M MHCI -370 chip0420_281359 15.8 10.99 Chip1 T1D_2 T1D TGTGCCAGCAGCTTATTCGGGACTAGCGACTACGAGCAGTACTTC CASSLFGTSDYEQYF TRBV13*01 TRBJ2-7*01 24.0 1501.0 _CASSLFGTSDYEQYF 1 2043 GAD65-114-122 GAD65 0.5 63 NEG 221 1822 12 HomoSapiens GAD65 VMNILLQYV effector T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*02:01 B2M MHCI -371 chip0420_642096 8.98 7.57 Chip1 T1D_1 T1D TGTGCCAGTAGTATATTCGGAGGGACTAACTATGGCTACACCTTC CASSIFGGTNYGYTF TRBV19*01 TRBJ1-2*01 2.0 40.0 _CASSIFGGTNYGYTF 1 6790 EBV-BRLF1 EBV 0.59 1264 EBV-BRLF1 235 6555 8 EBV BRLF1 YVLDHLIVV effector memory T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*02:01 B2M MHCI -372 chip0420_228361 8.77 9.7 Chip1 T1D_2 T1D TGTGCAGAGAGTACTTCGGGAGGAAAGCTTATCTTC CAESTSGGKLIF TRAV5*01 TRAJ23*01 15.0 702.0 TGCAGCGTGGGGACAGGGGGAACTAATGAAAAACTGTTTTTT CSVGTGGTNEKLFF TRBV29-1*01 TRBJ1-4*01 61.0 3766.0 CAESTSGGKLIF_CSVGTGGTNEKLFF 107 3009 EBV-BLMF1 EBV 0.7 2531 NEG 239 2770 8 EBV BLMF1 GLCTLVAML effector memory T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*02:01 B2M MHCI -373 chip0420_320147 12.62 7.29 Chip1 T1D_2 T1D TGCGCCAGCAGTCAAGAGCTGGGGTGATGAACACTGAAGCTTTCTTT CASSQELgg?VMNTEAFF TRBV4-3*01 TRBJ1-1*01 30.0 837.0 _CASSQELgg?VMNTEAFF 1 2994 EBV-BRLF1 EBV 0.98 1264 EBV-BRLF1 249 2745 10 EBV BRLF1 YVLDHLIVV effector memory T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*02:01 B2M MHCI -374 chip0420_844333 10.74 6.72 Chip1 T1D_2 T1D _ 6746 4331 EBV-BLMF1 EBV 0.69 2531 NEG 254 4077 10 EBV BLMF1 GLCTLVAML effector memory T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*02:01 B2M MHCI -375 chip0420_730402 8.95 9.06 Chip1 T1D_1 T1D TGTGCCAGCAGTCCGGACCAAACTAGCTCCTACAATGAGCAGTTCTTC CASSPDQTSSYNEQFF TRBV27*01 TRBJ2-1*01 14.0 748.0 _CASSPDQTSSYNEQFF 47 6755 EBV-BRLF1 EBV 0.96 1264 EBV-BRLF1 217 6538 8 EBV BRLF1 YVLDHLIVV effector memory T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*02:01 B2M MHCI -376 chip0420_691623 8.94 8.67 Chip1 T1D_1 T1D TGTGCCGTGGACCCATGGGGTAACCAGTTCTATTTT CAVDPWGNQFYF TRAV39*01 TRAJ49*01 30.0 2147.0 TGTGCCACCCAACAGGGGAGGGACAGTCAGCCCCAGCATTTT CATQQGRDSQPQHF TRBV28*01 TRBJ1-5*01 35.0 1994.0 CAVDPWGNQFYF_CATQQGRDSQPQHF 16 3550 EBV-BLMF1 EBV 0.61 2531 NEG 216 3334 8 EBV BLMF1 GLCTLVAML effector memory T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*02:01 B2M MHCI -377 chip0420_682552 8.69 8.54 Chip1 T1D_1 T1D TGCAGCGTCGGCTCCAGGGGAACTAATGAAAAACTGTTTTTT CSVGSRGTNEKLFF TRBV29-1*01 TRBJ1-4*01 74.0 3699.0 _CSVGSRGTNEKLFF 283 6910 EBV-BLMF1 EBV 0.44 2531 NEG 234 6676 8 EBV BLMF1 GLCTLVAML effector memory T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*02:01 B2M MHCI -378 chip0420_92111 14.05 9.1 Chip1 T1D_2 T1D TGTGCCGTGAAGAGGAGAGCTGCAGGCAACAAGCTAACTTTT CAVKRRAAGNKLTF TRAV12-2*01 TRAJ17*01 48.0 2132.0 TGTGCCAGCACCGACACCCTCAGCCTCATTAACACCGGGGAGCTGTTTTTT CASTDTLSLINTGELFF TRBV28*01 TRBJ2-2*01 83.0 3515.0 CAVKRRAAGNKLTF_CASTDTLSLINTGELFF 3 2620 EBV-BRLF1 EBV 0.91 1264 EBV-BRLF1 232 2388 12 EBV BRLF1 YVLDHLIVV effector T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*02:01 B2M MHCI -379 chip0420_665639 12.03 7.24 Chip1 T1D_2 T1D TGCAGCGTTGACCAAAGGACAGGGCAAAAGAAGAACTATGGCTACACCTTC CSVDQRTGQKKNYGYTF TRBV29-1*01 TRBJ1-2*01 38.0 1618.0 _CSVDQRTGQKKNYGYTF 40 2925 EBV-BLMF1 EBV 0.64 2531 NEG 258 2667 10 EBV BLMF1 GLCTLVAML effector memory T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*02:01 B2M MHCI -380 chip0420_461344 15.0 12.0 Chip1 T1D_2 T1D TGCAGCGTGGGGACAGGGGGAACTAATGAAAAACTGTTTTTT CSVGTGGTNEKLFF TRBV29-1*01 TRBJ1-4*01 104.0 3852.0 _CSVGTGGTNEKLFF 638 1843 EBV-BLMF1 EBV 0.71 2531 NEG 221 1622 12 EBV BLMF1 GLCTLVAML effector T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*02:01 B2M MHCI -381 chip0420_579860 12.43 8.52 Chip1 T1D_2 T1D CGTGTGGTGAACGGCAGGGATAGCAGCTATAAATTGGTCTTC RVVNGRDSSYKLVF TRAV12-1*01 TRAJ12*01 59.0 2344.0 TGTGCCAGCAGCTCGGGACTAGTCGCCCCCGGGGAGCTGTTTTTT CASSSGLVAPGELFF TRBV2*01 TRBJ2-2*01 48.0 2102.0 RVVNGRDSSYKLVF_CASSSGLVAPGELFF 1 2691 EBV-BLMF1 EBV 0.44 2531 NEG 238 2453 10 EBV BLMF1 GLCTLVAML effector memory T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*02:01 B2M MHCI -382 chip0420_462292 5.39 12.81 Chip1 T1D_1 T1D TGTGCCCGTAGTATTTTTGCTGCAGATACGCAGTATTTT CARSIFAADTQYF TRBV19*01 TRBJ2-3*01 21.0 919.0 _CARSIFAADTQYF 1 5859 M1 FLU 0.45 1250 M1 258 5601 7 InfluenzaA M1 GILGFVFTL transitional T cells between effector and memory populations PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*02:01 B2M MHCI -383 chip0420_39512 5.96 13.09 Chip1 T1D_1 T1D TGTGCCAGTAGTGTCAAGGCAGGAGAGACCCAGTACTTC CASSVKAGETQYF TRBV19*01 TRBJ2-5*01 4.0 127.0 _CASSVKAGETQYF 1 5742 M1 FLU 0.87 1250 M1 223 5519 7 InfluenzaA M1 GILGFVFTL transitional T cells between effector and memory populations PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*02:01 B2M MHCI -384 chip0420_24662 10.13 10.84 Chip1 T1D_2 T1D TGTGCCGTGAAGGACACCGACAAGCTCATCTTT CAVKDTDKLIF TRAV8-1*01 TRAJ34*01 28.0 2159.0 CAVKDTDKLIF_ 56 3264 EBV-BRLF1 EBV 0.94 1264 EBV-BRLF1 201 3063 9 EBV BRLF1 YVLDHLIVV effector memory T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*02:01 B2M MHCI -385 chip0420_679566 8.5 9.12 Chip1 T1D_1 T1D TGCAGCGTCGGCTCCAGGGGAACTAATGAAAAACTGTTTTTT CSVGSRGTNEKLFF TRBV29-1*01 TRBJ1-4*01 141.0 8191.0 _CSVGSRGTNEKLFF 283 5852 EBV-BLMF1 EBV 0.8 2531 NEG 208 5644 8 EBV BLMF1 GLCTLVAML effector memory T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*02:01 B2M MHCI -386 chip0420_324686 9.2 8.95 Chip1 T1D_1 T1D TGTGCCGTGAACAACTCCAGCAACACAGGCAAACTAATCTTT CAVNNSSNTGKLIF TRAV12-2*01 TRAJ37*01 15.0 625.0 CAVNNSSNTGKLIF_ 1 5648 EBV-BRLF1 EBV 0.79 1264 EBV-BRLF1 209 5439 8 EBV BRLF1 YVLDHLIVV effector memory T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*02:01 B2M MHCI -387 chip0420_484441 -2.83 11.24 Chip1 T1D_2 T1D _ 6746 4438 PGT-178 PGT 0.73 1480 PGT-178 205 4233 1 HomoSapiens PGT LLAGIGTVPI Naive T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*02:01 B2M MHCI -388 chip0420_458830 9.01 7.71 Chip1 T1D_2 T1D TGTGCTGTGAGTGAACCCTAAATAACAATGCCAGACTCATGTTT CAVSEP*a?tNNARLMF TRAV8-6*01 TRAJ31*01 1.0 11.0 TGCGCCAGCAGGATGGGGGCCGGGGATACGCAGTATTTT CASRMGAGDTQYF TRBV10-2*01 TRBJ2-3*01 15.0 1310.0 CAVSEP*a?tNNARLMF_CASRMGAGDTQYF 1 3683 EBV-BRLF1 EBV 0.9 1264 EBV-BRLF1 225 3458 8 EBV BRLF1 YVLDHLIVV effector memory T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*02:01 B2M MHCI -389 chip0420_455145 13.77 7.19 Chip1 T1D_1 T1D TGTGTGGTGAACGGGGGGGATAGCAGCTATAAATTGATCTTC CVVNGGDSSYKLIF TRAV12-1*01 TRAJ12*01 4.0 94.0 TGTGCCAGCAGTTCGGGACAGGTACTTCCCAATGAGCAGTTCTTC CASSSGQVLPNEQFF TRBV2*01 TRBJ2-1*01 31.0 1754.0 CVVNGGDSSYKLIF_CASSSGQVLPNEQFF 31 2370 EBV-BLMF1 EBV 0.45 2531 NEG 231 2139 10 EBV BLMF1 GLCTLVAML effector memory T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*02:01 B2M MHCI -390 chip0420_145935 9.22 8.56 Chip1 T1D_1 T1D TGTGCCAGCAGTCCGGACCGAACTAGCTCCTACAATGAGCAGTTCTTC CASSPDRTSSYNEQFF TRBV27*01 TRBJ2-1*01 84.0 3030.0 _CASSPDRTSSYNEQFF 1 3769 EBV-BRLF1 EBV 0.83 1264 EBV-BRLF1 242 3527 8 EBV BRLF1 YVLDHLIVV effector memory T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*02:01 B2M MHCI -391 chip0420_465091 12.59 6.47 Chip1 T1D_2 T1D TGCAGCGTTGGGGGCAGCTTCTATGGCTACACCTTC CSVGGSFYGYTF TRBV29-1*01 TRBJ1-2*01 5.0 292.0 _CSVGGSFYGYTF 42 3395 EBV-BLMF1 EBV 0.67 2531 NEG 219 3176 10 EBV BLMF1 GLCTLVAML effector memory T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*02:01 B2M MHCI -392 chip0420_509518 12.02 9.36 Chip1 T1D_2 T1D TGCAGCGTGGGGACAGGGGGAACTAATGAAAAACTGTTTTTT CSVGTGGTNEKLFF TRBV29-1*01 TRBJ1-4*01 16.0 646.0 _CSVGTGGTNEKLFF 638 3354 EBV-BLMF1 EBV 0.59 2531 NEG 234 3120 10 EBV BLMF1 GLCTLVAML effector memory T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*02:01 B2M MHCI -393 chip0420_859245 9.35 9.85 Chip1 T1D_1 T1D TGTGCAGCAAGCGGCGGAAGCCAAGGAAATCTCATCTTT CAASGGSQGNLIF TRAV29/DV5*01 TRAJ42*01 12.0 900.0 TGCAGCACCCAAGAGGGGGGGTATGGCTACACCTTC CSTQEGGYGYTF TRBV29-1*01 TRBJ1-2*01 83.0 7638.0 CAASGGSQGNLIF_CSTQEGGYGYTF 2 3894 EBV-BLMF1 EBV 0.48 2531 NEG 226 3668 8 EBV BLMF1 GLCTLVAML effector memory T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*02:01 B2M MHCI -394 chip0420_226101 9.83 9.92 Chip1 T1D_2 T1D TGCAGCGTGGGGACAGGGGGAACTAATGAAAAACTGTTTTTT CSVGTGGTNEKLFF TRBV29-1*01 TRBJ1-4*01 109.0 6183.0 _CSVGTGGTNEKLFF 638 3820 EBV-BLMF1 EBV 0.5 2531 NEG 230 3590 9 EBV BLMF1 GLCTLVAML effector memory T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*02:01 B2M MHCI -395 chip0420_658449 10.11 6.69 Chip1 T1D_2 T1D TGCGCCAGCAGTGAGGACGGTATGAACACTGAAGCTTTCTTT CASSEDGMNTEAFF TRBV10-2*01 TRBJ1-1*01 191.0 8819.0 _CASSEDGMNTEAFF 10 8175 EBV-LMP2A EBV 0.91 700 EBV-LMP2A 234 7941 10 EBV LMP2A CLGGLLTMV effector memory T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*02:01 B2M MHCI -396 chip0420_117917 -2.28 11.68 Chip1 T1D_2 T1D TGTGCCGTGAACAGAGGATACAGCACCCTCACCTTT CAVNRGYSTLTF TRAV12-2*01 TRAJ11*01 22.0 2052.0 TGCAGCCCCTCCGGGGGTCCCCCCAAAGCCAATGAGCAGTTCTTC CSPSGGPPKANEQFF TRBV29-1*01 TRBJ2-1*01 1.0 65.0 CAVNRGYSTLTF_CSPSGGPPKANEQFF 1 4092 PGT-178 PGT 0.89 1480 PGT-178 202 3890 4 HomoSapiens PGT LLAGIGTVPI Naive T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*02:01 B2M MHCI -397 chip0420_208609 8.59 9.02 Chip1 T1D_2 T1D TGCAGCGTGGGGACAGGGGGAACTAATGAAAAACTGTTTTTT CSVGTGGTNEKLFF TRBV29-1*01 TRBJ1-4*01 80.0 3472.0 _CSVGTGGTNEKLFF 638 4150 EBV-BLMF1 EBV 0.75 2531 NEG 211 3939 8 EBV BLMF1 GLCTLVAML effector memory T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*02:01 B2M MHCI -398 chip0420_220877 8.73 8.65 Chip1 T1D_1 T1D TGTGCCAGTAGTCCCCACTTGGGTGCGGCGGCCGAGCAGTACTTC CASSPHLGAAAEQYF TRBV19*01 TRBJ2-7*01 23.0 976.0 _CASSPHLGAAAEQYF 10 6342 EBV-BRLF1 EBV 0.57 1264 NEG 212 6130 8 EBV BRLF1 YVLDHLIVV effector memory T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*02:01 B2M MHCI -399 chip0420_322026 10.21 10.39 Chip1 T1D_1 T1D TGCATCCTGAGACGCTATGGAGGAAGCCAAGGAAATCTCATCTTT CILRRYGGSQGNLIF TRAV26-2*01 TRAJ42*01 51.0 2101.0 CILRRYGGSQGNLIF_ 9 4804 EBV-BLMF1 EBV 0.93 2531 EBV-BLMF1 211 4593 9 EBV BLMF1 GLCTLVAML effector memory T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*02:01 B2M MHCI -400 chip0420_18133 15.62 9.94 Chip1 T1D_2 T1D TGTGCTCTAAAAAACACCGACAAGCTCATCTTT CALKNTDKLIF TRAV16*01 TRAJ34*01 50.0 4127.0 TGCGCCAGCAGTCAATCGAGAGGGTCGCTCTGGGATACGCAGTATTTT CASSQSRGSLWDTQYF TRBV4-3*01 TRBJ2-3*01 22.0 2003.0 CALKNTDKLIF_CASSQSRGSLWDTQYF 5 2526 EBV-BRLF1 EBV 0.94 1264 EBV-BRLF1 218 2308 12 EBV BRLF1 YVLDHLIVV effector T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*02:01 B2M MHCI -401 chip0420_650726 13.21 10.28 Chip1 T1D_2 T1D TGCAGCGTGGGGACAGGGGGAACTAATGAAAAACTGTTTTTT CSVGTGGTNEKLFF TRBV29-1*01 TRBJ1-4*01 73.0 3210.0 _CSVGTGGTNEKLFF 638 5142 EBV-BLMF1 EBV 0.61 2531 NEG 236 4906 9 EBV BLMF1 GLCTLVAML effector memory T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*02:01 B2M MHCI -402 chip0420_613888 10.06 9.61 Chip1 T1D_1 T1D TGTGCCAGCAGCCCAGTTAGCGGGTCAACCTACGAGCAGTACTTC CASSPVSGSTYEQYF TRBV3-1*01 TRBJ2-7*01 58.0 3491.0 _CASSPVSGSTYEQYF 80 4322 EBV-BLMF1 EBV 0.67 2531 EBV-BLMF1 218 4104 8 EBV BLMF1 GLCTLVAML effector memory T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*02:01 B2M MHCI -403 chip0420_865051 12.97 6.78 Chip1 T1D_1 T1D TGTGCCAGCAGCCCCAGCCCGGGTGGTCCGCAGTATTTT CASSPSPGGPQYF TRBV14*01 TRBJ2-3*01 8.0 302.0 _CASSPSPGGPQYF 1 2608 EBV-BLMF1 EBV 0.86 2531 NEG 237 2371 10 EBV BLMF1 GLCTLVAML effector memory T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*02:01 B2M MHCI -404 chip0420_846516 14.68 10.7 Chip1 T1D_2 T1D TGTGCAGAGGATAACAATGCCAGACTCATGTTT CAEDNNARLMF TRAV29/DV5*01,TRAV5*01 TRAJ31*01 2.0 17.0 TGCAGCGTTGACCAAAGGACAGGGCAAAAGAAGAACTATGGCTACACCTTC CSVDQRTGQKKNYGYTF TRBV29-1*01 TRBJ1-2*01 23.0 1068.0 CAEDNNARLMF_CSVDQRTGQKKNYGYTF 3 3596 EBV-BLMF1 EBV 0.55 2531 NEG 222 3374 12 EBV BLMF1 GLCTLVAML effector T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*02:01 B2M MHCI -405 chip0420_262593 9.58 9.33 Chip1 T1D_2 T1D TGTGCCAGCAGCGTAGGGGTTCTTAGCGCCGGGGAGCTGTTTTTT CASSVGVLSAGELFF TRBV9*01 TRBJ2-2*01 88.0 5550.0 _CASSVGVLSAGELFF 3 4819 EBV-BLMF1 EBV 0.85 2531 NEG 224 4595 8 EBV BLMF1 GLCTLVAML effector memory T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*02:01 B2M MHCI -406 chip0420_222781 11.49 6.2 Chip1 T1D_1 T1D TGTGCTGACTTAGACTGCTGGCAACCACCGTAAGCTGATTTGG CADLDCW??cNHRKLIW TRAV36/DV7*01 TRAJ38*01 5.0 358.0 TGTGCCAGCAGCACGGGACAGCTATCGAACACCGGGGAGCTGTTTTTT CASSTGQLSNTGELFF TRBV9*01 TRBJ2-2*01 36.0 1974.0 CADLDCW??cNHRKLIW_CASSTGQLSNTGELFF 1 5046 EBV-BLMF1 EBV 0.89 2531 NEG 237 4809 10 EBV BLMF1 GLCTLVAML effector memory T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*02:01 B2M MHCI -407 chip0420_354900 14.89 10.86 Chip1 T1D_2 T1D TGTGCAGAGAAGGCCTGGGGGTTACCAGAAAGTTACCTTT CAEKAWgg??gtYQKVTF TRAV5*01 TRAJ13*01 1.0 28.0 TGCAGCGTGGGGACAGGGGGAACTAATGAAAAACTGTTTTTT CSVGTGGTNEKLFF TRBV29-1*01 TRBJ1-4*01 99.0 4679.0 CAEKAWgg??gtYQKVTF_CSVGTGGTNEKLFF 4 2135 EBV-BLMF1 EBV 0.44 2531 NEG 225 1910 12 EBV BLMF1 GLCTLVAML effector T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*02:01 B2M MHCI -408 chip0420_593909 11.86 6.38 Chip1 T1D_2 T1D TGTGCAGCATACGCAGGCAACATGCTCACCTTT CAAYAGNMLTF TRAV29/DV5*01 TRAJ39*01 2.0 156.0 TGCGCCAGCAGGATGGGGGCCGGGGATACGCAGTATTTT CASRMGAGDTQYF TRBV10-2*01 TRBJ2-3*01 16.0 1253.0 CAAYAGNMLTF_CASRMGAGDTQYF 21 3907 EBV-BLMF1 EBV 0.7 2531 NEG 262 3645 6 EBV BLMF1 GLCTLVAML central memory T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*02:01 B2M MHCI -409 chip0420_109703 8.79 8.09 Chip1 T1D_1 T1D TGTGTGGTGAACGAGGGGGATAGCAGCTATAAATTGATCTTC CVVNEGDSSYKLIF TRAV12-1*01 TRAJ12*01 33.0 2080.0 TGTGCCAGCAGTTCGGGACAGGTACTTCCCAATGAGCAGTTCTTC CASSSGQVLPNEQFF TRBV2*01 TRBJ2-1*01 35.0 2407.0 CVVNEGDSSYKLIF_CASSSGQVLPNEQFF 1 7602 EBV-BRLF1 EBV 0.68 1264 EBV-BRLF1 227 7375 8 EBV BRLF1 YVLDHLIVV effector memory T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*02:01 B2M MHCI -410 chip0420_34074 -0.41 9.74 Chip1 T1D_1 T1D TGTGCCGTGAACTCGAGGGGCGGTAACCAGTTCTATTTT CAVNSRGGNQFYF TRAV12-2*01 TRAJ49*01 32.0 2063.0 TGTGCTAGCAGTTACTGGTCCAACAATGAGCAGTTCTTC CASSYWSNNEQFF TRBV6-5*01 TRBJ2-1*01 20.0 751.0 CAVNSRGGNQFYF_CASSYWSNNEQFF 1 5732 PGT-178 PGT 0.74 1480 PGT-178 203 5529 3 HomoSapiens PGT LLAGIGTVPI Naive T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*02:01 B2M MHCI -411 chip0420_853215 13.81 7.5 Chip1 T1D_2 T1D TGCAGCGTGGGGACAGGGGGAACTAATGAAAAACTGTTTTTT CSVGTGGTNEKLFF TRBV29-1*01 TRBJ1-4*01 86.0 4615.0 _CSVGTGGTNEKLFF 638 2737 EBV-BLMF1 EBV 0.8 2531 NEG 236 2501 10 EBV BLMF1 GLCTLVAML effector memory T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*02:01 B2M MHCI -412 chip0420_244229 9.32 8.08 Chip1 T1D_1 T1D TGCATCCTGTGATGCTATGGGGGTAGCCAAGGAAATCTCATCTTT CIL*CYGGSQGNLIF TRAV26-2*01 TRAJ42*01 51.0 2065.0 CIL*CYGGSQGNLIF_ 1 3644 EBV-BLMF1 EBV 0.75 2531 NEG 220 3424 8 EBV BLMF1 GLCTLVAML effector memory T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*02:01 B2M MHCI -413 chip0420_337352 9.1 8.92 Chip1 T1D_1 T1D TGTGCCAGCAGCCAAAGCCCGGGTGGTACGCAGTATTTT CASSQSPGGTQYF TRBV14*01 TRBJ2-3*01 13.0 682.0 _CASSQSPGGTQYF 94 6053 EBV-BLMF1 EBV 0.78 2531 NEG 202 5851 8 EBV BLMF1 GLCTLVAML effector memory T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*02:01 B2M MHCI -414 chip0420_427706 5.4 8.84 Chip1 T1D_2 T1D TGTGCTATGGACGGGCCTTCCGGATACAGCACCCTCACCTTT CAMDGPSGYSTLTF TRAV17*01 TRAJ11*01 62.0 2481.0 TGTGCCGGCCGCCGCCAGGGCGGGAAGGATGGCTACACCTTC CAGRRQGGKDGYTF TRBV6-1*01 TRBJ1-2*01 7.0 358.0 CAMDGPSGYSTLTF_CAGRRQGGKDGYTF 1 5235 EBV-LMP2-FLY EBV 0.94 355 EBV-LMP2-FLY 214 5021 6 EBV LMP2 FLYALALLL central memory T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*02:01 B2M MHCI -415 chip0420_866201 11.5 8.29 Chip1 T1D_2 T1D TGCGCCAGCAGTCATCAGGCCTCCGAGCAGTACTTC CASSHQASEQYF TRBV10-1*01 TRBJ2-7*01 34.0 2184.0 _CASSHQASEQYF 4 3695 EBV-BRLF1 EBV 0.91 1264 EBV-BRLF1 225 3470 10 EBV BRLF1 YVLDHLIVV effector memory T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*02:01 B2M MHCI -416 chip0420_180737 13.9 9.8 Chip1 T1D_2 T1D _ 6746 5330 EBV-BRLF1 EBV 0.92 1264 NEG 218 5112 12 EBV BRLF1 YVLDHLIVV effector T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*02:01 B2M MHCI -417 chip0420_166340 11.57 11.12 Chip1 T1D_1 T1D TGCAGCGTCACAACCGACAGGAATAGCAATCAGCCCCAGCATTTT CSVTTDRNSNQPQHF TRBV29-1*01 TRBJ1-5*01 48.0 2507.0 _CSVTTDRNSNQPQHF 10 2590 EBV-BLMF1 EBV 1.0 2531 NEG 187 2403 9 EBV BLMF1 GLCTLVAML effector memory T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*02:01 B2M MHCI -418 chip0420_556642 9.54 9.61 Chip1 T1D_1 T1D TGCAGTGCTAGAGCTGACACAGGGAATGGCTACACCTTC CSARADTGNGYTF TRBV20-1*01 TRBJ1-2*01 2.0 162.0 _CSARADTGNGYTF 1 4088 EBV-BLMF1 EBV 0.74 2531 EBV-BLMF1 232 3856 8 EBV BLMF1 GLCTLVAML effector memory T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*02:01 B2M MHCI -419 chip0420_280918 5.91 11.53 Chip1 T1D_2 T1D TGTGCCCCCGGGAGCAGTGCTTCCACGCTACTCTTT CAPGSSASTLLF TRAV12-2*01 TRAJ3*01 26.0 2068.0 TGTGCCAGCAGTGATGGCACCGGGGAGCTGTTTTTT CASSDGTGELFF TRBV2*01 TRBJ2-2*01 74.0 4857.0 CAPGSSASTLLF_CASSDGTGELFF 1 6530 PREINS-2-10 INS 0.6 37 NEG 199 6331 7 HomoSapiens PREINS ALWMRLLPL transitional T cells between effector and memory populations PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*02:01 B2M MHCI -420 chip0420_648745 10.93 7.77 Chip1 T1D_2 T1D TGTGCTCTAAAAAACACCGACAAGCTCATCTTT CALKNTDKLIF TRAV16*01 TRAJ34*01 19.0 1671.0 TGTGCTCAAAAAAAACACCGCCAAGCTCATCTTT CAQKKca??ccAKLIF TRAV16*01 TRAJ34*01 18.0 1616.0 0.38 TGTGCCAGCAGTTTATCAGTACTCTCCTACAATGAGCAGTTCTTC CASSLSVLSYNEQFF TRBV27*01 TRBJ2-1*01 71.0 3656.0 CALKNTDKLIF_CASSLSVLSYNEQFF 3 5095 EBV-BRLF1 EBV 0.95 1264 EBV-BRLF1 204 4891 10 EBV BRLF1 YVLDHLIVV effector memory T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*02:01 B2M MHCI -421 chip0420_71424 12.53 6.98 Chip1 T1D_2 T1D TGCGCCAGCAGAGCGGGAGCCGGGGATACGCAGTATTTT CASRAGAGDTQYF TRBV10-2*01 TRBJ2-3*01 25.0 1423.0 _CASRAGAGDTQYF 59 2930 EBV-BLMF1 EBV 1.0 2531 NEG 225 2705 10 EBV BLMF1 GLCTLVAML effector memory T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*02:01 B2M MHCI -422 chip0420_488067 10.86 8.05 Chip1 T1D_1 T1D TGTGCCAGCAGCATTCCGGGGGGGGGCGCGGACACCGGGGAGCTGTTTTTT CASSIPGGGADTGELFF TRBV9*01 TRBJ2-2*01 10.0 506.0 _CASSIPGGGADTGELFF 1 6584 EBV-BLMF1 EBV 0.8 2531 NEG 214 6370 10 EBV BLMF1 GLCTLVAML effector memory T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*02:01 B2M MHCI -423 chip0420_451535 6.28 14.26 Chip1 T1D_1 T1D _ 6746 4396 M1 FLU 0.8 1250 M1 224 4172 7 InfluenzaA M1 GILGFVFTL transitional T cells between effector and memory populations PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*02:01 B2M MHCI -424 chip0420_188077 12.64 6.38 Chip1 T1D_1 T1D _ 6746 4370 EBV-BRLF1 EBV 0.8 1264 NEG 227 4143 10 EBV BRLF1 YVLDHLIVV effector memory T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*02:01 B2M MHCI -425 chip0420_520190 10.7 6.77 Chip1 T1D_1 T1D TGCAGCGTCGGCTCCAGGGGAACTAATGAAAAACTGTTTTTT CSVGSRGTNEKLFF TRBV29-1*01 TRBJ1-4*01 102.0 7066.0 _CSVGSRGTNEKLFF 283 4329 EBV-BLMF1 EBV 0.8 2531 NEG 230 4099 10 EBV BLMF1 GLCTLVAML effector memory T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*02:01 B2M MHCI -426 chip0420_37569 8.58 9.49 Chip1 T1D_2 T1D TGTGCAGAGAGTACTTCGGGAGGAAGGCTTATCTTC CAESTSGGRLIF TRAV5*01 TRAJ23*01 30.0 2142.0 TGCAGCGTGGGGACAGGGGGAACTAATGAAAAACTGTTTTTT CSVGTGGTNEKLFF TRBV29-1*01 TRBJ1-4*01 58.0 2452.0 CAESTSGGRLIF_CSVGTGGTNEKLFF 5 5177 EBV-BLMF1 EBV 0.8 2531 NEG 228 4949 8 EBV BLMF1 GLCTLVAML effector memory T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*02:01 B2M MHCI -427 chip0420_590350 10.55 7.11 Chip1 T1D_1 T1D TGTGCCGTGGGCGACACCGACAAGCTCATCTTT CAVGDTDKLIF TRAV8-1*01 TRAJ34*01 28.0 2129.0 TGTGCCAGTAGGGCGAATCTAGGTAGCAATCAGCCCCAGCATTTT CASRANLGSNQPQHF TRBV19*01 TRBJ1-5*01 65.0 2475.0 CAVGDTDKLIF_CASRANLGSNQPQHF 1 5730 EBV-BRLF1 EBV 0.92 1264 EBV-BRLF1 214 5516 10 EBV BRLF1 YVLDHLIVV effector memory T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*02:01 B2M MHCI -428 chip0420_45470 10.53 8.47 Chip1 T1D_2 T1D TGCAGCGTGGGGACAGGGGGAACTAATGAAAAACTGTTTTTT CSVGTGGTNEKLFF TRBV29-1*01 TRBJ1-4*01 212.0 10567.0 _CSVGTGGTNEKLFF 638 5106 EBV-BLMF1 EBV 0.45 2531 NEG 221 4885 10 EBV BLMF1 GLCTLVAML effector memory T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*02:01 B2M MHCI -429 chip0420_689032 8.3 11.8 Chip1 T1D_2 T1D TGTGCAGAGAGTACTTCGGGAGGAAAGCTTATCTTC CAESTSGGKLIF TRAV5*01 TRAJ23*01 1.0 30.0 TGCAGCGTGGGGACAGGGGGAACTAATGAAAAACTGTTTTTT CSVGTGGTNEKLFF TRBV29-1*01 TRBJ1-4*01 119.0 6137.0 CAESTSGGKLIF_CSVGTGGTNEKLFF 107 3328 EBV-BLMF1 EBV 0.91 2531 NEG 219 3109 7 EBV BLMF1 GLCTLVAML transitional T cells between effector and memory populations PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*02:01 B2M MHCI -430 chip0420_451329 12.41 7.46 Chip1 T1D_2 T1D TGCGCCAGCAGGATGGGGGCCGGGGATACGCAGTATTTT CASRMGAGDTQYF TRBV10-2*01 TRBJ2-3*01 45.0 2913.0 _CASRMGAGDTQYF 90 2455 EBV-BLMF1 EBV 0.88 2531 NEG 227 2228 10 EBV BLMF1 GLCTLVAML effector memory T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*02:01 B2M MHCI -431 chip0420_424112 13.0 8.26 Chip1 T1D_2 T1D TGTGCCAGCAGCCCCTCGACTAGCGGGAGTGGGGAGACCCAGTACTTC CASSPSTSGSGETQYF TRBV3-1*01 TRBJ2-5*01 23.0 1563.0 _CASSPSTSGSGETQYF 18 3437 EBV-BRLF1 EBV 0.87 1264 EBV-BRLF1 271 3166 10 EBV BRLF1 YVLDHLIVV effector memory T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*02:01 B2M MHCI -432 chip0420_23667 7.35 8.92 Chip1 T1D_1 T1D TGTGCCTGGACTCCGGGACAGGGGGAGATCGGGGAGCTGTTTTTT CAWTPGQGEIGELFF TRAV27*01 TRAJ4*01 1.0 17.0 TGTGCCTGGACTCCGGGACAGGGGGAGATCGGGGAGCTGTTTTTT CAWTPGQGEIGELFF TRBV30*01 TRBJ2-2*01 34.0 2053.0 CAWTPGQGEIGELFF_CAWTPGQGEIGELFF 1 9033 PGT-178 PGT 0.58 1480 PGT-178 213 8820 8 HomoSapiens PGT LLAGIGTVPI effector memory T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*02:01 B2M MHCI -433 chip0420_372773 11.75 10.82 Chip1 T1D_2 T1D TGTGCCTTAGGAGGACTGACCTTT CALGGLTF TRAV8-1*01 TRAJ22*01 13.0 2029.0 TGTGCCAGCAGCCCCTCGACTAGCGGGAGTGGGGAGACCCAGTACTTC CASSPSTSGSGETQYF TRBV3-1*01 TRBJ2-5*01 57.0 3512.0 CALGGLTF_CASSPSTSGSGETQYF 12 3168 EBV-BRLF1 EBV 0.93 1264 EBV-BRLF1 233 2935 9 EBV BRLF1 YVLDHLIVV effector memory T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*02:01 B2M MHCI -434 chip0420_731245 8.85 8.62 Chip1 tet_neg _ 6746 5312 EBV-BLMF1 EBV 0.83 2531 EBV-BLMF1 220 5092 8 EBV BLMF1 GLCTLVAML effector memory T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*02:01 B2M MHCI -435 chip0420_242641 13.3 7.26 Chip1 T1D_2 T1D TGTGCTTCCCTAACCCCGGGGGCTTCCAAGATAATCTTT CASLTPGASKIIF TRAV8-6*01 TRAJ3*01 24.0 2105.0 TGTGCCAGCAGCTCGGGACTAGTCGCCCCCGGGGAGCTGTTTTTT CASSSGLVAPGELFF TRBV2*01 TRBJ2-2*01 92.0 5047.0 CASLTPGASKIIF_CASSSGLVAPGELFF 38 3857 EBV-BLMF1 EBV 0.67 2531 NEG 216 3641 10 EBV BLMF1 GLCTLVAML effector memory T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*02:01 B2M MHCI -436 chip0420_819854 11.94 8.92 Chip1 T1D_1 T1D TGTGCCATCAGTGAGGGGACGCTGAGCTCCTACAATGAGCAGTTCTTC CAISEGTLSSYNEQFF TRBV10-3*01 TRBJ2-1*01 101.0 5081.0 _CAISEGTLSSYNEQFF 7 3256 EBV-BRLF1 EBV 0.89 1264 EBV-BRLF1 221 3035 10 EBV BRLF1 YVLDHLIVV effector memory T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*02:01 B2M MHCI -437 chip0420_84830 12.95 6.9 Chip1 T1D_2 T1D TGTGCCAGCAACTTAGCGGGGAACAATGAGCAGTTCTTC CASNLAGNNEQFF TRBV9*01 TRBJ2-1*01 54.0 4418.0 _CASNLAGNNEQFF 15 3550 EBV-BLMF1 EBV 0.86 2531 NEG 229 3321 10 EBV BLMF1 GLCTLVAML effector memory T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*02:01 B2M MHCI -438 chip0420_104677 11.43 11.35 Chip1 T1D_2 T1D TGCAGCGTGGGGACAGGGGGAACTAATGAAAAACTGTTTTTT CSVGTGGTNEKLFF TRBV29-1*01 TRBJ1-4*01 84.0 4201.0 _CSVGTGGTNEKLFF 638 2956 EBV-BLMF1 EBV 0.62 2531 NEG 214 2742 9 EBV BLMF1 GLCTLVAML effector memory T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*02:01 B2M MHCI -439 chip0420_517889 11.81 10.68 Chip1 T1D_1 T1D TGCAGCGTCGGCTCCAGGGGAACTAATGAAAAACTGTTTTTT CSVGSRGTNEKLFF TRBV29-1*01 TRBJ1-4*01 28.0 1882.0 _CSVGSRGTNEKLFF 283 4016 EBV-BLMF1 EBV 0.45 2531 NEG 214 3802 9 EBV BLMF1 GLCTLVAML effector memory T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*02:01 B2M MHCI -440 chip0420_430214 15.95 11.51 Chip1 T1D_2 T1D TGTGCAATGAGAGAGGGCACGGGCAACTTCAACAAATTTTACTTT CAMREGTGNFNKFYF TRAV14/DV4*01 TRAJ21*01 70.0 2026.0 TGTGCCAGCAAGGGGATCGATGGCTACACCTTC CASKGIDGYTF TRBV13*01 TRBJ1-2*01 19.0 1387.0 CAMREGTGNFNKFYF_CASKGIDGYTF 6 1640 EBV-BRLF1 EBV 0.88 1264 EBV-BRLF1 218 1422 12 EBV BRLF1 YVLDHLIVV effector T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*02:01 B2M MHCI -441 chip0420_179171 7.84 10.89 Chip1 T1D_2 T1D TGTGCAGAGAGTACTTCGGGAGGAAAGCTTATCTTC CAESTSGGKLIF TRAV5*01 TRAJ23*01 30.0 2128.0 TGCAGCGTGGGGACAGGGGGAACTAATGAAAAACTGTTTTTT CSVGTGGTNEKLFF TRBV29-1*01 TRBJ1-4*01 70.0 2805.0 CAESTSGGKLIF_CSVGTGGTNEKLFF 107 4569 EBV-BLMF1 EBV 0.57 2531 NEG 220 4349 7 EBV BLMF1 GLCTLVAML transitional T cells between effector and memory populations PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*02:01 B2M MHCI -442 chip0420_126579 11.89 8.93 Chip1 T1D_2 T1D TGCAGCGTTGACCAAAGGACAGGGCAAAAGAAGAACTATGGCTACACCTTC CSVDQRTGQKKNYGYTF TRBV29-1*01 TRBJ1-2*01 82.0 3750.0 _CSVDQRTGQKKNYGYTF 40 3143 EBV-BLMF1 EBV 0.65 2531 NEG 205 2938 10 EBV BLMF1 GLCTLVAML effector memory T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*02:01 B2M MHCI -443 chip0420_740710 11.41 6.86 Chip1 T1D_1 T1D _ 6746 5420 EBV-LMP2-FLY EBV 0.89 355 EBV-LMP2-FLY 212 5208 6 EBV LMP2 FLYALALLL central memory T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*02:01 B2M MHCI -444 chip0420_378528 8.92 7.88 Chip1 T1D_1 T1D TGTGTGGTGAACGGGGGGGATAGCAGCTATAAATTGATCTTC CVVNGGDSSYKLIF TRAV12-1*01 TRAJ12*01 2.0 111.0 TGTGCCAGCAGTTCGGGACAGGTACTTCCCAATGAGCAGTTCTTC CASSSGQVLPNEQFF TRBV2*01 TRBJ2-1*01 35.0 2129.0 CVVNGGDSSYKLIF_CASSSGQVLPNEQFF 31 7890 EBV-BLMF1 EBV 0.92 2531 EBV-BLMF1 239 7651 8 EBV BLMF1 GLCTLVAML effector memory T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*02:01 B2M MHCI -445 chip0420_673351 8.47 10.68 Chip1 T1D_1 T1D _ 6746 4874 EBV-BLMF1 EBV 1.0 2531 EBV-BLMF1 235 4639 8 EBV BLMF1 GLCTLVAML effector memory T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*02:01 B2M MHCI -446 chip0420_487705 13.85 7.81 Chip1 T1D_2 T1D TGCAGCGTTGACCAAAGGACAGGGCAAAAGAAGAACTATGGCTACACCTTC CSVDQRTGQKKNYGYTF TRBV29-1*01 TRBJ1-2*01 62.0 2499.0 _CSVDQRTGQKKNYGYTF 40 2629 EBV-BLMF1 EBV 0.77 2531 NEG 217 2412 10 EBV BLMF1 GLCTLVAML effector memory T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*02:01 B2M MHCI -447 chip0420_590031 12.77 10.93 Chip1 T1D_1 T1D TGTGCCAGCAGCCAAAGCCCGGGTGGTACGCAGTATTTT CASSQSPGGTQYF TRBV14*01 TRBJ2-3*01 21.0 900.0 _CASSQSPGGTQYF 94 2800 EBV-BLMF1 EBV 1.0 2531 NEG 205 2595 9 EBV BLMF1 GLCTLVAML effector memory T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*02:01 B2M MHCI -448 chip0420_141804 11.07 6.73 Chip1 T1D_2 T1D TGTGCCAGCAGCTCGGGACTAGTCGCCCCCGGGGAGCTGTTTTTT CASSSGLVAPGELFF TRBV2*01 TRBJ2-2*01 46.0 2645.0 _CASSSGLVAPGELFF 133 5989 EBV-BLMF1 EBV 0.56 2531 NEG 236 5753 10 EBV BLMF1 GLCTLVAML effector memory T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*02:01 B2M MHCI -449 chip0420_373118 11.18 10.35 Chip1 T1D_1 T1D TGTGCTCTCTATAACACCGACAAGCTCATCTTT CALYNTDKLIF TRAV9-2*01 TRAJ34*01 25.0 2164.0 TGTGCCAGCAGCCCAGTTAGCGGGTCAACCTACGAGCAGTACTTC CASSPVSGSTYEQYF TRBV3-1*01 TRBJ2-7*01 10.0 619.0 CALYNTDKLIF_CASSPVSGSTYEQYF 15 4339 EBV-BLMF1 EBV 0.91 2531 EBV-BLMF1 210 4129 9 EBV BLMF1 GLCTLVAML effector memory T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*02:01 B2M MHCI -450 chip0420_31974 12.07 7.27 Chip1 T1D_2 T1D TGTGCAGAGAGTACTTCGGGAGGACGCTTATCTTC CAESTtc?GRTLIF TRAV5*01 TRAJ23*01 34.0 2265.0 TGCAGCGTGGGGACAGGGGGAACTAATGAAAAACTGTTTTTT CSVGTGGTNEKLFF TRBV29-1*01 TRBJ1-4*01 195.0 6867.0 CAESTtc?GRTLIF_CSVGTGGTNEKLFF 1 3547 EBV-BLMF1 EBV 0.8 2531 NEG 251 3296 10 EBV BLMF1 GLCTLVAML effector memory T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*02:01 B2M MHCI -451 chip0420_470650 15.82 9.32 Chip1 T1D_2 T1D TGCGCCAGCAGAGCGGGAGCCGGGGATACGCAGTATTTT CASRAGAGDTQYF TRBV10-2*01 TRBJ2-3*01 23.0 1486.0 _CASRAGAGDTQYF 59 2689 EBV-BLMF1 EBV 0.78 2531 NEG 226 2463 12 EBV BLMF1 GLCTLVAML effector T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*02:01 B2M MHCI -452 chip0420_797246 10.16 11.14 Chip1 T1D_1 T1D _ 6746 3462 EBV-BLMF1 EBV 0.83 2531 EBV-BLMF1 203 3259 9 EBV BLMF1 GLCTLVAML effector memory T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*02:01 B2M MHCI -453 chip0420_76952 -2.32 9.6 Chip1 T1D_1 T1D TGTGCCAGCAGCCGTACCTTAGCGGGGGAAAAAGAGACCCAGTACTTC CASSRTLAGEKETQYF TRBV14*01 TRBJ2-5*01 8.0 386.0 _CASSRTLAGEKETQYF 1 5461 PGT-178 PGT 0.71 1480 PGT-178 199 5262 3 HomoSapiens PGT LLAGIGTVPI Naive T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*02:01 B2M MHCI -454 chip0420_683224 12.19 10.76 Chip1 T1D_1 T1D TGTGCAGCAAGCGGCGGAAGCCAAGGAAATCTCATCTTT CAASGGSQGNLIF TRAV29/DV5*01 TRAJ42*01 13.0 694.0 TGCAGCACCCAAGAGGGGGGGTATGGCTACACCTTC CSTQEGGYGYTF TRBV29-1*01 TRBJ1-2*01 51.0 3370.0 CAASGGSQGNLIF_CSTQEGGYGYTF 2 6128 EBV-BLMF1 EBV 0.92 2531 NEG 222 5906 9 EBV BLMF1 GLCTLVAML effector memory T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*02:01 B2M MHCI -455 chip0420_649564 14.09 9.48 Chip1 tet_neg TGTGTGGTGATCCGAACTGGGGCAAACAACCTCTTCTTT CVVIRTGANNLFF TRAV12-1*01 TRAJ36*01 39.0 2117.0 TGCAGCGTTGAAGGCGGGACAGCCTACGAGCAGTACTTC CSVEGGTAYEQYF TRBV29-1*01 TRBJ2-7*01 24.0 1976.0 CVVIRTGANNLFF_CSVEGGTAYEQYF 1 7104 EBV-BLMF1 EBV 0.5 2531 NEG 195 6909 12 EBV BLMF1 GLCTLVAML effector T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*02:01 B2M MHCI -456 chip0420_647585 5.72 12.8 Chip1 T1D_1 T1D TGTGCCAGTAGTATAAATGGGGGCCGGAGGGATGGCTACACCTTC CASSINGGRRDGYTF TRBV19*01 TRBJ1-2*01 19.0 587.0 _CASSINGGRRDGYTF 32 7033 M1 FLU 0.79 1250 M1 216 6817 7 InfluenzaA M1 GILGFVFTL transitional T cells between effector and memory populations PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*02:01 B2M MHCI -457 chip0420_191326 8.46 9.18 Chip1 T1D_2 T1D TGTGCCGTGAAGGACACCGACAAGCTCATCTTT CAVKDTDKLIF TRAV8-1*01 TRAJ34*01 2.0 198.0 TGTGCCTGGAGTGTACAGCTAGCGGGAGTAGACGAGCAGTACTTC CAWSVQLAGVDEQYF TRBV30*01 TRBJ2-7*01 48.0 2191.0 CAVKDTDKLIF_CAWSVQLAGVDEQYF 9 5761 EBV-BRLF1 EBV 0.95 1264 EBV-BRLF1 209 5552 8 EBV BRLF1 YVLDHLIVV effector memory T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*02:01 B2M MHCI -458 chip0420_178471 8.69 7.76 Chip1 T1D_1 T1D TGTGCCGTGAATGCGCTCGACAAGCTCATCTTC CAVNALDKLIF TRAV8-1*01 TRAJ34*01 59.0 4614.0 TGTGCCAGCAGTGAGGCATTTCTAGCGGACAATGAGCAGTTCTTC CASSEAFLADNEQFF TRBV6-4*01 TRBJ2-1*01 36.0 2003.0 CAVNALDKLIF_CASSEAFLADNEQFF 3 10811 EBV-BRLF1 EBV 0.45 1264 EBV-BRLF1 228 10583 8 EBV BRLF1 YVLDHLIVV effector memory T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*02:01 B2M MHCI -459 chip0420_612135 13.28 7.46 Chip1 T1D_2 T1D TGCGCCAGCAGGATGGGGGCCGGGGATACGCAGTATTTT CASRMGAGDTQYF TRBV10-2*01 TRBJ2-3*01 103.0 6546.0 _CASRMGAGDTQYF 90 2309 EBV-BLMF1 EBV 0.78 2531 NEG 231 2078 10 EBV BLMF1 GLCTLVAML effector memory T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*02:01 B2M MHCI -460 chip0420_551148 6.26 10.04 Chip1 T1D_2 T1D TGCAGCGTGGGGACAGGGGGAACTAATGAAAAACTGTTTTTT CSVGTGGTNEKLFF TRBV29-1*01 TRBJ1-4*01 50.0 3039.0 _CSVGTGGTNEKLFF 638 3337 EBV-BLMF1 EBV 0.55 2531 NEG 224 3113 6 EBV BLMF1 GLCTLVAML central memory T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*02:01 B2M MHCI -461 chip0420_665085 16.26 11.78 Chip1 T1D_2 T1D TGTGCCGTGTCCGGAGGCTTCAAAACTATCTTT CAVSGGFKTIF TRAV12-2*01 TRAJ9*01 26.0 2349.0 TGTGCCAGCATGGACTCCAACTTTGGAAACACCATATATTTT CASMDSNFGNTIYF TRBV2*01 TRBJ1-3*01 21.0 1274.0 CAVSGGFKTIF_CASMDSNFGNTIYF 1 1468 IAPP-5-13 IAPP 0.42 30 NEG 212 1256 12 HomoSapiens IAPP KLQVFLIVL effector T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*02:01 B2M MHCI -462 chip0420_143932 10.5 8.03 Chip1 T1D_2 T1D TGCGCCAGCAGAGCGGGAGCCGGGGATACGCAGTATTTT CASRAGAGDTQYF TRBV10-2*01 TRBJ2-3*01 58.0 2804.0 _CASRAGAGDTQYF 59 2748 EBV-BLMF1 EBV 0.75 2531 NEG 242 2506 10 EBV BLMF1 GLCTLVAML effector memory T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*02:01 B2M MHCI -463 chip0420_665460 5.02 11.77 Chip1 T1D_2 T1D TGTGTGGTGAACCCCACCGACAAGCTCCTCTTT CVVNPTDKLLF TRAV12-1*01 TRAJ34*01 6.0 559.0 CVVNPTDKLLF_ 1 3964 M1 FLU 0.64 1250 NEG 219 3745 6 InfluenzaA M1 GILGFVFTL central memory T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*02:01 B2M MHCI -464 chip0420_633614 12.85 6.84 Chip1 T1D_2 T1D TGTGCCGTGAAGGACACCGACAAGCTCATCTTT CAVKDTDKLIF TRAV8-1*01 TRAJ34*01 24.0 2071.0 CAVKDTDKLIF_ 56 3420 EBV-BRLF1 EBV 0.8 1264 NEG 240 3180 10 EBV BRLF1 YVLDHLIVV effector memory T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*02:01 B2M MHCI -465 chip0420_730587 -1.96 7.31 Chip1 T1D_1 T1D _ 6746 6279 PGT-178 PGT 0.56 1480 PGT-178 209 6070 3 HomoSapiens PGT LLAGIGTVPI Naive T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*02:01 B2M MHCI -466 chip0420_594220 11.96 7.4 Chip1 T1D_2 T1D TGTGTGGTGAACGGCAGGGATAGCAGCTATAAATTGATCTTC CVVNGRDSSYKLIF TRAV12-1*01 TRAJ12*01 197.0 8972.0 TGTGCCAGCAGCTCGGGACTAGTCGCCCCCGGGGAGCTGTTTTTT CASSSGLVAPGELFF TRBV2*01 TRBJ2-2*01 81.0 4419.0 CVVNGRDSSYKLIF_CASSSGLVAPGELFF 98 3875 EBV-BLMF1 EBV 0.62 2531 NEG 200 3675 10 EBV BLMF1 GLCTLVAML effector memory T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*02:01 B2M MHCI -467 chip0420_815754 12.9 7.18 Chip1 T1D_2 T1D TGCGCCAGCAGGATGGGGGCCGGGGATACGCAGTATTTT CASRMGAGDTQYF TRBV10-2*01 TRBJ2-3*01 29.0 2600.0 _CASRMGAGDTQYF 90 3413 EBV-BLMF1 EBV 0.78 2531 NEG 256 3157 10 EBV BLMF1 GLCTLVAML effector memory T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*02:01 B2M MHCI -468 chip0420_178510 11.71 6.66 Chip1 T1D_2 T1D TGTGCAGAGAGTACTTCGGGAGGAAAGCTTATCTTC CAESTSGGKLIF TRAV5*01 TRAJ23*01 2.0 26.0 TGCAGCGTGGGGACAGGGGGAACTAATGAAAAACTGTTTTTT CSVGTGGTNEKLFF TRBV29-1*01 TRBJ1-4*01 2.0 82.0 CAESTSGGKLIF_CSVGTGGTNEKLFF 107 4508 EBV-BLMF1 EBV 0.53 2531 NEG 221 4287 10 EBV BLMF1 GLCTLVAML effector memory T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*02:01 B2M MHCI -469 chip0420_532684 13.52 7.51 Chip1 T1D_2 T1D TGCAGCGTGGGGACAGGGGGAACTAATGAAAAACTGTTTTTT CSVGTGGTNEKLFF TRBV29-1*01 TRBJ1-4*01 51.0 2029.0 _CSVGTGGTNEKLFF 638 2789 EBV-BLMF1 EBV 0.67 2531 NEG 200 2589 10 EBV BLMF1 GLCTLVAML effector memory T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*02:01 B2M MHCI -470 chip0420_323960 -3.15 8.44 Chip1 T1D_2 T1D TGTGCCACAAATGCCGGTGGTACTAGCTATGGAAAGCTGACATTT CATNAGGTSYGKLTF TRAV12-2*01 TRAJ52*01 79.0 2941.0 TGTGCCAGCAGTTACTCGGCGGCCGGCACTGAAGCTTTCTTT CASSYSAAGTEAFF TRBV6-5*01 TRBJ1-1*01 7.0 292.0 CATNAGGTSYGKLTF_CASSYSAAGTEAFF 1 5343 PGT-178 PGT 0.65 1480 PGT-178 210 5133 2 HomoSapiens PGT LLAGIGTVPI Naive T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*02:01 B2M MHCI -471 chip0420_824553 6.84 14.47 Chip1 T1D_1 T1D _ 6746 2659 M1 FLU 0.54 1250 M1 202 2457 7 InfluenzaA M1 GILGFVFTL transitional T cells between effector and memory populations PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*02:01 B2M MHCI -472 chip0420_340452 12.73 7.1 Chip1 T1D_2 T1D TGCAGCGTGGGGACAGGGGGAACTAATGAAAAACTGTTTTTT CSVGTGGTNEKLFF TRBV29-1*01 TRBJ1-4*01 71.0 3544.0 _CSVGTGGTNEKLFF 638 3050 EBV-BLMF1 EBV 0.58 2531 NEG 193 2857 10 EBV BLMF1 GLCTLVAML effector memory T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*02:01 B2M MHCI -473 chip0420_182993 8.49 9.61 Chip1 T1D_2 T1D _ 6746 5749 EBV-BRLF1 EBV 0.8 1264 EBV-BRLF1 237 5512 8 EBV BRLF1 YVLDHLIVV effector memory T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*02:01 B2M MHCI -474 chip0420_746032 8.25 9.38 Chip1 T1D_2 T1D TGTGCAGAGAGTACTTCGGGAGGAAAGCTTATCTTC CAESTSGGKLIF TRAV5*01 TRAJ23*01 30.0 2185.0 TGCAGCGTGGGGACAGGGGGAACTAATGAAAAACTGTTTTTT CSVGTGGTNEKLFF TRBV29-1*01 TRBJ1-4*01 109.0 5274.0 CAESTSGGKLIF_CSVGTGGTNEKLFF 107 4660 EBV-BLMF1 EBV 0.4 2531 NEG 258 4402 8 EBV BLMF1 GLCTLVAML effector memory T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*02:01 B2M MHCI -475 chip0420_286639 6.28 13.01 Chip1 T1D_1 T1D TGTGCAGCAAGCAGTGAAAATAATAATGCAGGCAACATGCTCACCTTT CAASSENNNAGNMLTF TRAV23/DV6*01 TRAJ39*01 9.0 225.0 TGTGCCAGTAGTATCTTCGCGGGAGGGCTGTTCTACAATGAGCAGTTCTTC CASSIFAGGLFYNEQFF TRBV19*01 TRBJ2-1*01 15.0 815.0 CAASSENNNAGNMLTF_CASSIFAGGLFYNEQFF 1 5239 M1 FLU 0.57 1250 M1 201 5038 7 InfluenzaA M1 GILGFVFTL transitional T cells between effector and memory populations PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*02:01 B2M MHCI -476 chip0420_437811 9.6 10.63 Chip1 T1D_2 T1D TGCAGCGTGGGGACAGGGGGAACTAATGAAAAACTGTTTTTT CSVGTGGTNEKLFF TRBV29-1*01 TRBJ1-4*01 23.0 1324.0 _CSVGTGGTNEKLFF 638 4297 EBV-BLMF1 EBV 0.6 2531 NEG 190 4107 9 EBV BLMF1 GLCTLVAML effector memory T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*02:01 B2M MHCI -477 chip0420_259401 12.67 7.07 Chip1 T1D_2 T1D TGCGCCAGCAGGATGGGGGCCGGGGATACGCAGTATTTT CASRMGAGDTQYF TRBV10-2*01 TRBJ2-3*01 59.0 3417.0 _CASRMGAGDTQYF 90 2801 EBV-BLMF1 EBV 0.75 2531 NEG 209 2592 10 EBV BLMF1 GLCTLVAML effector memory T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*02:01 B2M MHCI -478 chip0420_221696 9.16 9.41 Chip1 T1D_2 T1D TGTGCCAGCAGTTACATGTCCGGCGAAGCTTTCTTT CASSYMSGEAFF TRBV6-2*01,TRBV6-3*01 TRBJ1-1*01 5.0 228.0 _CASSYMSGEAFF 8 3778 EBV-BRLF1 EBV 0.97 1264 EBV-BRLF1 211 3567 8 EBV BRLF1 YVLDHLIVV effector memory T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*02:01 B2M MHCI -479 chip0420_99727 10.73 7.21 Chip1 T1D_2 T1D TGCAGCGTGGGGACAGGGGGAACTAATGAAAAACTGTTTTTT CSVGTGGTNEKLFF TRBV29-1*01 TRBJ1-4*01 102.0 5232.0 _CSVGTGGTNEKLFF 638 1697 EBV-BLMF1 EBV 0.6 2531 NEG 212 1485 10 EBV BLMF1 GLCTLVAML effector memory T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*02:01 B2M MHCI -480 chip0420_279734 13.41 6.97 Chip1 T1D_2 T1D TGTGCCGTGAAAGTGGATGGCCAGAAGCTGCTCTTT CAVKVDGQKLLF TRAV8-1*01 TRAJ16*01 1.0 43.0 CAVKVDGQKLLF_ 2 3612 EBV-BRLF1 EBV 0.96 1264 EBV-BRLF1 208 3404 10 EBV BRLF1 YVLDHLIVV effector memory T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*02:01 B2M MHCI -481 chip0420_860450 11.29 10.33 Chip1 T1D_2 T1D TGCAGCGTTGACCAAAGGACAGGGCAAAAGAAGAACTATGGCTACACCTTC CSVDQRTGQKKNYGYTF TRBV29-1*01 TRBJ1-2*01 24.0 1008.0 _CSVDQRTGQKKNYGYTF 40 3120 EBV-BLMF1 EBV 1.0 2531 NEG 206 2914 9 EBV BLMF1 GLCTLVAML effector memory T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*02:01 B2M MHCI -482 chip0420_191023 15.43 9.28 Chip1 T1D_2 T1D TGTGCAGCATTCGCAGGCAACTTGCTCGCCTTT CAAFAGNLLAF TRAV29/DV5*01 TRAJ39*01 16.0 2076.0 TGCGCCAGCAGACAGGGGGATGGAGATACGCAGTATTTT CASRQGDGDTQYF TRBV10-2*01 TRBJ2-3*01 148.0 8582.0 CAAFAGNLLAF_CASRQGDGDTQYF 1 2497 EBV-BLMF1 EBV 0.7 2531 NEG 216 2281 12 EBV BLMF1 GLCTLVAML effector T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*02:01 B2M MHCI -483 chip0420_74556 12.59 10.68 Chip1 T1D_1 T1D _ 6746 4535 EBV-BLMF1 EBV 0.85 2531 NEG 217 4318 9 EBV BLMF1 GLCTLVAML effector memory T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*02:01 B2M MHCI -484 chip0420_116157 8.75 10.38 Chip1 T1D_1 T1D TGTGCTGTGAGTGATTTGGGCATGACATGCGCTTT CAVSDtt?GHDMRF TRAV8-4*01 TRAJ43*01 31.0 2345.0 TGCAGCGTCGGCTCCAGGGGAACTAATGAAAAACTGTTTTTT CSVGSRGTNEKLFF TRBV29-1*01 TRBJ1-4*01 12.0 493.0 CAVSDtt?GHDMRF_CSVGSRGTNEKLFF 1 6215 EBV-BLMF1 EBV 0.93 2531 NEG 203 6012 8 EBV BLMF1 GLCTLVAML effector memory T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*02:01 B2M MHCI -485 chip0420_791065 15.35 10.77 Chip1 T1D_2 T1D TGTGTGGTGAACGGCAGGGATAGCAGCTATAAATTGATCTTC CVVNGRDSSYKLIF TRAV12-1*01 TRAJ12*01 5.0 219.0 TGTGCCAGCAGCTCGGGACTAGTCGCCCCCGGGGAGCTGTTTTTT CASSSGLVAPGELFF TRBV2*01 TRBJ2-2*01 112.0 4878.0 CVVNGRDSSYKLIF_CASSSGLVAPGELFF 98 2383 EBV-BLMF1 EBV 0.5 2531 NEG 205 2178 12 EBV BLMF1 GLCTLVAML effector T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*02:01 B2M MHCI -486 chip0420_351624 12.32 7.49 Chip1 T1D_2 T1D TGCAGCGTGGGGACAGGGGGAACTAATGAAAAACTGTTTTTT CSVGTGGTNEKLFF TRBV29-1*01 TRBJ1-4*01 89.0 4136.0 _CSVGTGGTNEKLFF 638 2927 EBV-BLMF1 EBV 0.6 2531 NEG 234 2693 10 EBV BLMF1 GLCTLVAML effector memory T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*02:01 B2M MHCI -487 chip0420_581823 10.53 10.73 Chip1 T1D_2 T1D TGTGCTCTAAAAAACACCGACAAGCTCATCTTT CALKNTDKLIF TRAV16*01 TRAJ34*01 31.0 2166.0 TGCGCCAGCAGTCAATCGAGAGGGTCGCTCTGGGATACGCAGTATTTT CASSQSRGSLWDTQYF TRBV4-3*01 TRBJ2-3*01 97.0 4374.0 CALKNTDKLIF_CASSQSRGSLWDTQYF 5 5064 EBV-BRLF1 EBV 0.93 1264 EBV-BRLF1 207 4857 9 EBV BRLF1 YVLDHLIVV effector memory T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*02:01 B2M MHCI -488 chip0420_370515 -0.55 8.12 Chip1 T1D_1 T1D _ 6746 7448 ZNT8-141-149 ZNT8 0.73 5 ZNT8-141-149 217 7231 3 HomoSapiens ZNT8 ILGALLSIL Naive T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*02:01 B2M MHCI -489 chip0420_332372 9.78 7.04 Chip1 T1D_2 T1D TGCAGCGTTGGAGGCACATTCTATGGCTACACCTTC CSVGGTFYGYTF TRBV29-1*01 TRBJ1-2*01 119.0 9170.0 _CSVGGTFYGYTF 12 6105 EBV-BLMF1 EBV 0.88 2531 EBV-BLMF1 213 5892 10 EBV BLMF1 GLCTLVAML effector memory T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*02:01 B2M MHCI -490 chip0420_123983 11.27 8.37 Chip1 T1D_2 T1D TGCAGCTCGCAGGAGGGCGGCTATGGCTACACCTTC CSSQEGGYGYTF TRBV29-1*01 TRBJ1-2*01 44.0 3941.0 _CSSQEGGYGYTF 11 3721 EBV-BLMF1 EBV 1.0 2531 NEG 218 3503 10 EBV BLMF1 GLCTLVAML effector memory T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*02:01 B2M MHCI -491 chip0420_596541 10.34 7.15 Chip1 T1D_2 T1D TGTGCCAGCAGCCCCTCGACTAGCGGGAGTGGGGAGACCCAGTACTTC CASSPSTSGSGETQYF TRBV3-1*01 TRBJ2-5*01 63.0 4143.0 _CASSPSTSGSGETQYF 18 3693 EBV-BRLF1 EBV 0.88 1264 EBV-BRLF1 236 3457 10 EBV BRLF1 YVLDHLIVV effector memory T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*02:01 B2M MHCI -492 chip0420_670251 11.45 7.02 Chip1 T1D_2 T1D TGCAGCGTGGGGACAGGGGGAACTAATGAAAAACTGTTTTTT CSVGTGGTNEKLFF TRBV29-1*01 TRBJ1-4*01 101.0 4862.0 _CSVGTGGTNEKLFF 638 3418 EBV-BLMF1 EBV 0.6 2531 NEG 234 3184 10 EBV BLMF1 GLCTLVAML effector memory T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*02:01 B2M MHCI -493 chip0420_765276 -1.35 9.44 Chip1 T1D_1 T1D _ 6746 6363 PREINS-17-24 INS 0.96 2 PREINS-17-24 200 6163 3 HomoSapiens PREINS WGPDPAAA Naive T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*02:01 B2M MHCI -494 chip0420_623966 5.71 12.87 Chip1 T1D_1 T1D TGTGCCTTTCTTCCTGCTGGGGGATACGCGCTTCCCCCCCGATAAACTCATCT CAFLPAGGta?RASPPINSS TRAV24*01 TRAJ53*01 1.0 14.0 CAFLPAGGta?RASPPINSS_ 1 6461 M1 FLU 0.82 1250 M1 215 6246 7 InfluenzaA M1 GILGFVFTL transitional T cells between effector and memory populations PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*02:01 B2M MHCI -495 chip0420_719092 10.8 7.17 Chip1 T1D_1 T1D TGTGCCACCCAACAGGGGAGGGACAGTCAGCCCCAGCATTTT CATQQGRDSQPQHF TRBV28*01 TRBJ1-5*01 36.0 1371.0 _CATQQGRDSQPQHF 52 3747 EBV-BLMF1 EBV 0.85 2531 NEG 203 3544 10 EBV BLMF1 GLCTLVAML effector memory T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*02:01 B2M MHCI -496 chip0420_690323 11.93 6.98 Chip1 T1D_2 T1D TGTGCCTTAGGCGGACTGACCTTT CALGGLTF TRAV8-1*01 TRAJ22*01 19.0 2082.0 TGTGCCAGCAGCCCCTCGACTAGCGGGAGTGGGGAGACCCAGTACTTC CASSPSTSGSGETQYF TRBV3-1*01 TRBJ2-5*01 31.0 2043.0 CALGGLTF_CASSPSTSGSGETQYF 12 3286 EBV-BRLF1 EBV 1.0 1264 NEG 224 3062 10 EBV BRLF1 YVLDHLIVV effector memory T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*02:01 B2M MHCI -497 chip0420_407627 12.02 10.8 Chip1 T1D_2 T1D TGTGCAGAGAGTACTTCGGGAGGAAAGCTTATCTTC CAESTSGGKLIF TRAV5*01 TRAJ23*01 1.0 19.0 TGCAGCGTGGGGACAGGGGGAACTAATGAAAAACTGTTTTTT CSVGTGGTNEKLFF TRBV29-1*01 TRBJ1-4*01 48.0 2216.0 CAESTSGGKLIF_CSVGTGGTNEKLFF 107 3538 EBV-BLMF1 EBV 0.45 2531 NEG 214 3324 9 EBV BLMF1 GLCTLVAML effector memory T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*02:01 B2M MHCI -498 chip0420_742623 15.29 8.82 Chip1 T1D_2 T1D TGTGCAGAGAGTACTTCGGGAGGAAAGCTTATCTTC CAESTSGGKLIF TRAV5*01 TRAJ23*01 29.0 2126.0 TGCAGCGTGGGGACAGGGGGAACTAATGAAAAACTGTTTTTT CSVGTGGTNEKLFF TRBV29-1*01 TRBJ1-4*01 136.0 6724.0 CAESTSGGKLIF_CSVGTGGTNEKLFF 107 2572 EBV-BLMF1 EBV 0.6 2531 NEG 228 2344 12 EBV BLMF1 GLCTLVAML effector T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*02:01 B2M MHCI -499 chip0420_837825 10.91 12.17 Chip1 T1D_2 T1D TGTGCCGTGAACCTATACAGCACCCTCACCTTT CAVNLYSTLTF TRAV8-1*01 TRAJ11*01 1.0 266.0 CAVNLYSTLTF_ 3 2450 EBV-BRLF1 EBV 0.95 1264 EBV-BRLF1 205 2245 9 EBV BRLF1 YVLDHLIVV effector memory T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*02:01 B2M MHCI -500 chip0420_621607 8.47 9.05 Chip1 T1D_2 T1D _ 6746 4738 EBV-BLMF1 EBV 0.54 2531 NEG 259 4479 8 EBV BLMF1 GLCTLVAML effector memory T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*02:01 B2M MHCI -501 chip0420_687808 9.6 9.9 Chip1 T1D_2 T1D TGTGCCGTGAAGGACACCGACAAGCTCATCTTT CAVKDTDKLIF TRAV8-1*01 TRAJ34*01 4.0 322.0 TGCGCCAGCAGTCAAGCGATGGGGTGATGAACACTGAAGCTTTCTTT CASSQAMgg?VMNTEAFF TRBV4-3*01 TRBJ1-1*01 43.0 1351.0 CAVKDTDKLIF_CASSQAMgg?VMNTEAFF 1 3756 EBV-BRLF1 EBV 0.97 1264 EBV-BRLF1 217 3539 9 EBV BRLF1 YVLDHLIVV effector memory T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*02:01 B2M MHCI -502 chip0420_644890 11.89 10.84 Chip1 T1D_1 T1D TGTGCCAGCAGCACGGGACAGCTATCGAACACCGGGGAGCTGTTTTTT CASSTGQLSNTGELFF TRBV9*01 TRBJ2-2*01 10.0 346.0 _CASSTGQLSNTGELFF 82 3141 EBV-BLMF1 EBV 0.77 2531 NEG 217 2924 9 EBV BLMF1 GLCTLVAML effector memory T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*02:01 B2M MHCI -503 chip0420_504959 13.75 10.61 Chip1 T1D_1 T1D TGTGCTGTGCGTGCTTTGGGTCTGCCCTGCGCTTT CAVRAtt?GSALRF TRAV8-4*01 TRAJ43*01 23.0 1407.0 TGCAGCGTCGGCTCCAGGGGAACTAATGAAAAACTGTTTTTT CSVGSRGTNEKLFF TRBV29-1*01 TRBJ1-4*01 94.0 5317.0 CAVRAtt?GSALRF_CSVGSRGTNEKLFF 1 3599 EBV-BLMF1 EBV 1.0 2531 NEG 208 3391 12 EBV BLMF1 GLCTLVAML effector T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*02:01 B2M MHCI -504 chip0420_265318 11.21 9.02 Chip1 T1D_2 T1D TGTGCCAGCAGCGTAGTAGGCAATGAGCAGTTCTTC CASSVVGNEQFF TRBV9*01 TRBJ2-1*01 1.0 55.0 _CASSVVGNEQFF 5 2705 EBV-BLMF1 EBV 0.73 2531 NEG 192 2513 10 EBV BLMF1 GLCTLVAML effector memory T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*02:01 B2M MHCI -505 chip0420_599137 12.95 6.88 Chip1 T1D_2 T1D TGCAGCGTGGGGACAGGGGGAACTAATGAAAAACTGTTTTTT CSVGTGGTNEKLFF TRBV29-1*01 TRBJ1-4*01 86.0 4523.0 _CSVGTGGTNEKLFF 638 3606 EBV-BLMF1 EBV 0.58 2531 NEG 218 3388 10 EBV BLMF1 GLCTLVAML effector memory T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*02:01 B2M MHCI -506 chip0420_105717 12.33 8.44 Chip1 T1D_1 T1D _ 6746 3266 EBV-BLMF1 EBV 0.44 2531 NEG 208 3058 10 EBV BLMF1 GLCTLVAML effector memory T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*02:01 B2M MHCI -507 chip0420_230549 12.52 7.19 Chip1 T1D_2 T1D TGCAGCGTTGGGGGCAGCTTCTATGGCTACACCTTC CSVGGSFYGYTF TRBV29-1*01 TRBJ1-2*01 111.0 10261.0 _CSVGGSFYGYTF 42 2591 EBV-BLMF1 EBV 0.68 2531 EBV-BLMF1 222 2369 10 EBV BLMF1 GLCTLVAML effector memory T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*02:01 B2M MHCI -508 chip0420_380705 14.93 8.93 Chip1 T1D_2 T1D TGTGTGGTGAACGGCAGGGATAGCAGCTATAAATTGATCTTC CVVNGRDSSYKLIF TRAV12-1*01 TRAJ12*01 42.0 2086.0 TGTGCCAGCAGCTCGGGACTAGTCGCCCCCGGGGAGCTGTTTTTT CASSSGLVAPGELFF TRBV2*01 TRBJ2-2*01 25.0 1880.0 CVVNGRDSSYKLIF_CASSSGLVAPGELFF 98 2160 EBV-BLMF1 EBV 0.62 2531 NEG 204 1956 12 EBV BLMF1 GLCTLVAML effector T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*02:01 B2M MHCI -509 chip0420_339526 14.49 9.75 Chip1 T1D_1 T1D TGTGCCAGCAGCCAGGGATTGGCCAACGTCCTGACTTTC CASSQGLANVLTF TRBV3-1*01 TRBJ2-6*01 29.0 1687.0 _CASSQGLANVLTF 3 2869 EBV-BRLF1 EBV 0.9 1264 EBV-BRLF1 228 2641 12 EBV BRLF1 YVLDHLIVV effector T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*02:01 B2M MHCI -510 chip0420_559158 15.19 9.54 Chip1 T1D_2 T1D TGTGCCAGCACCCCCGATATTAACACTGAAGCTTTCTTT CASTPDINTEAFF TRBV6-1*01 TRBJ1-1*01 12.0 452.0 _CASTPDINTEAFF 4 3093 EBV-BLMF1 EBV 0.55 2531 NEG 242 2851 12 EBV BLMF1 GLCTLVAML effector T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*02:01 B2M MHCI -511 chip0420_646223 14.2 8.15 Chip1 T1D_2 T1D TGCAGCGTGGGGACAGGGGGAACTAATGAAAAACTGTTTTTT CSVGTGGTNEKLFF TRBV29-1*01 TRBJ1-4*01 192.0 9641.0 _CSVGTGGTNEKLFF 638 3082 EBV-BLMF1 EBV 0.7 2531 NEG 225 2857 10 EBV BLMF1 GLCTLVAML effector memory T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*02:01 B2M MHCI -512 chip0420_507058 5.86 8.89 Chip1 T1D_1 T1D _ 6746 8011 EBV-LMP2-FLY EBV 0.92 355 EBV-LMP2-FLY 201 7810 6 EBV LMP2 FLYALALLL central memory T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*02:01 B2M MHCI -513 chip0420_475672 5.79 11.12 Chip1 T1D_2 T1D TGTGCAATGAGAGAGGAAACCAGTGGCTCTAGGTTGACCTTT CAMREETSGSRLTF TRAV14/DV4*01 TRAJ10*01 65.0 3944.0 TGCGCCAGCAGTGAGGCCGGAGAGACCCAGTACTTC CASSEAGETQYF TRBV10-2*01 TRBJ2-5*01 36.0 3299.0 CAMREETSGSRLTF_CASSEAGETQYF 1 3767 ZNT8-266-274 ZNT8 0.75 2 ZNT8-266-274 173 3594 6 HomoSapiens ZNT8 ILKDFSILL central memory T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*02:01 B2M MHCI -514 chip0420_630375 10.78 11.7 Chip1 T1D_2 T1D TGCAGTGCTAGGGACCGGACAGGAAATGGCTACACCTTC CSARDRTGNGYTF TRBV20-1*01 TRBJ1-2*01 41.0 2441.0 _CSARDRTGNGYTF 7 2543 EBV-BLMF1 EBV 0.82 2531 NEG 173 2370 9 EBV BLMF1 GLCTLVAML effector memory T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*02:01 B2M MHCI -515 chip0420_210900 10.0 7.24 Chip1 T1D_2 T1D _ 6746 3044 EBV-BLMF1 EBV 1.0 2531 NEG 216 2828 10 EBV BLMF1 GLCTLVAML effector memory T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*02:01 B2M MHCI -516 chip0420_737085 13.32 7.57 Chip1 T1D_2 T1D TGCAGCGTGGGGACAGGGGGAACTAATGAAAAACTGTTTTTT CSVGTGGTNEKLFF TRBV29-1*01 TRBJ1-4*01 143.0 7368.0 _CSVGTGGTNEKLFF 638 2622 EBV-BLMF1 EBV 0.44 2531 NEG 208 2414 10 EBV BLMF1 GLCTLVAML effector memory T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*02:01 B2M MHCI -517 chip0420_568518 5.49 9.08 Chip1 T1D_2 T1D TGTGCCGCCACCTCCTATACCGGCACTGCCAGTAAACTCACCTTT CAATSYTGTASKLTF TRAV8-1*01 TRAJ44*01 10.0 802.0 TGTGCCAGCAGTTTATACTACAATGAGCAGTTCTTC CASSLYYNEQFF TRBV12-3*01,TRBV12-4*01 TRBJ2-1*01 72.0 6139.0 CAATSYTGTASKLTF_CASSLYYNEQFF 3 5004 EBV-LMP1-1 EBV 0.88 237 EBV-LMP1-1 191 4813 6 EBV LMP1 YLLEMLWRL central memory T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*02:01 B2M MHCI -518 chip0420_103338 8.49 8.98 Chip1 T1D_1 T1D TGTGCCGTGAAGGACACCGACAAGCTCATCTTT CAVKDTDKLIF TRAV8-1*01 TRAJ34*01 11.0 780.0 CAVKDTDKLIF_ 56 6775 EBV-BRLF1 EBV 0.75 1264 EBV-BRLF1 209 6566 8 EBV BRLF1 YVLDHLIVV effector memory T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*02:01 B2M MHCI -519 chip0420_28115 14.12 10.35 Chip1 T1D_1 T1D TGTGCTGACTTAGGATGCTGGCAGCCCCCGTAAGCTGCTTTGG CADLGCW??cSPRKLLW TRAV36/DV7*01 TRAJ38*01 52.0 2056.0 TGTGCCAGCAGCCCGGGACAGCTATCGAACACCGGGGAGCTGTTTTTT CASSPGQLSNTGELFF TRBV9*01 TRBJ2-2*01 28.0 1521.0 CADLGCW??cSPRKLLW_CASSPGQLSNTGELFF 1 3816 EBV-BLMF1 EBV 0.5 2531 NEG 224 3592 12 EBV BLMF1 GLCTLVAML effector T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*02:01 B2M MHCI -520 chip0420_161874 15.78 10.71 Chip1 T1D_2 T1D TGTGCTTCCCTAACCCCGGGGGCTTCCAAGATAATCTTT CASLTPGASKIIF TRAV8-6*01 TRAJ3*01 1.0 13.0 TGTGCCAGCAGCTCGGGACTAGTCGCCCCCGGGGAGCTGTTTTTT CASSSGLVAPGELFF TRBV2*01 TRBJ2-2*01 61.0 3068.0 CASLTPGASKIIF_CASSSGLVAPGELFF 38 2152 EBV-BLMF1 EBV 0.75 2531 NEG 193 1959 12 EBV BLMF1 GLCTLVAML effector T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*02:01 B2M MHCI -521 chip0420_556452 13.69 8.32 Chip1 T1D_2 T1D TGTGCAGAGAGTACTTCGGGAGGAAAGCTTATCTTC CAESTSGGKLIF TRAV5*01 TRAJ23*01 39.0 2595.0 TGCAGCGTGGGGACAGGGGGAACTAATGAAAAACTGTTTTTT CSVGTGGTNEKLFF TRBV29-1*01 TRBJ1-4*01 187.0 9948.0 CAESTSGGKLIF_CSVGTGGTNEKLFF 107 2155 EBV-BLMF1 EBV 0.45 2531 NEG 236 1919 10 EBV BLMF1 GLCTLVAML effector memory T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*02:01 B2M MHCI -522 chip0420_540415 8.04 8.02 Chip1 T1D_1 T1D TGCAGCGTCGGCTCCCGGGGAACTAATGAAAAACTGTTTTTT CSVGSRGTNEKLFF TRBV29-1*01 TRBJ1-4*01 32.0 1474.0 _CSVGSRGTNEKLFF 283 4452 EBV-BLMF1 EBV 0.64 2531 NEG 208 4244 8 EBV BLMF1 GLCTLVAML effector memory T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*02:01 B2M MHCI -523 chip0420_114253 13.49 10.65 Chip1 T1D_1 T1D TGCGGCCCCGAGGAACCTAACGACTACAAGCTCAGCTTT CGPEEPNDYKLSF TRAV30*01 TRAJ20*01 27.0 2030.0 TGTGCCAGCAGCACGGGACAGCTATCGAACACCGGGGAGCTGTTTTTT CASSTGQLSNTGELFF TRBV9*01 TRBJ2-2*01 36.0 1895.0 CGPEEPNDYKLSF_CASSTGQLSNTGELFF 14 3448 EBV-BLMF1 EBV 0.67 2531 NEG 198 3250 9 EBV BLMF1 GLCTLVAML effector memory T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*02:01 B2M MHCI -524 chip0420_14153 5.8 13.3 Chip1 T1D_1 T1D _ 6746 5083 M1 FLU 0.84 1250 M1 213 4870 7 InfluenzaA M1 GILGFVFTL transitional T cells between effector and memory populations PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*02:01 B2M MHCI -525 chip0420_143589 11.26 10.76 Chip1 T1D_1 T1D TGTGCCAGCAGCCCGGGACAGCTATCGAACACCGGGGAGCTGTTTTTT CASSPGQLSNTGELFF TRBV9*01 TRBJ2-2*01 42.0 1664.0 _CASSPGQLSNTGELFF 3 6033 EBV-BLMF1 EBV 0.82 2531 NEG 194 5839 9 EBV BLMF1 GLCTLVAML effector memory T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*02:01 B2M MHCI -526 chip0420_711257 14.12 13.04 Chip1 T1D_2 T1D TGTGCTGTGAGGGAACCCTAAATAACAATGCCAGACTCATGTTT CAVREP*a?tNNARLMF TRAV8-6*01 TRAJ31*01 2.0 59.0 CAVREP*a?tNNARLMF_ 1 1728 EBV-BRLF1 EBV 0.71 1264 EBV-BRLF1 202 1526 12 EBV BRLF1 YVLDHLIVV effector T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*02:01 B2M MHCI -527 chip0420_101502 0.13 8.7 Chip1 T1D_1 T1D TGTGCCAGCAGCGATACCGGGACTTCCCTCAGCGAGCAGTACTTC CASSDTGTSLSEQYF TRBV9*01 TRBJ2-7*01 12.0 847.0 _CASSDTGTSLSEQYF 1 7286 POL-132-140 HIV 0.87 37 POL-132-140 191 7095 4 HIV-1 POL LVGPTPVNI Naive T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*02:01 B2M MHCI -528 chip0420_82819 9.13 8.01 Chip1 T1D_1 T1D TGTGCCAGTAGTCCCCACTTGGGTGCGGCGGCCGAGCAGTACTTC CASSPHLGAAAEQYF TRBV19*01 TRBJ2-7*01 10.0 646.0 _CASSPHLGAAAEQYF 10 5029 EBV-BRLF1 EBV 0.92 1264 EBV-BRLF1 206 4823 8 EBV BRLF1 YVLDHLIVV effector memory T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*02:01 B2M MHCI -529 chip0420_618770 -2.99 9.38 Chip1 T1D_1 T1D _ 6746 7358 PGT-178 PGT 0.74 1480 PGT-178 181 7177 2 HomoSapiens PGT LLAGIGTVPI Naive T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*02:01 B2M MHCI -530 chip0420_467999 11.87 9.95 Chip1 T1D_1 T1D TGTGCCAGCAGCACGGGACAGCTATCGAACACCGGGGAGCTGTTTTTT CASSTGQLSNTGELFF TRBV9*01 TRBJ2-2*01 34.0 1086.0 _CASSTGQLSNTGELFF 82 4253 EBV-BLMF1 EBV 0.58 2531 NEG 189 4064 9 EBV BLMF1 GLCTLVAML effector memory T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*02:01 B2M MHCI -531 chip0420_536547 13.14 7.5 Chip1 T1D_2 T1D TGCAGCGTGGGGACAGGGGGAACTAATGAAAAACTGTTTTTT CSVGTGGTNEKLFF TRBV29-1*01 TRBJ1-4*01 81.0 4233.0 _CSVGTGGTNEKLFF 638 3478 EBV-BLMF1 EBV 0.67 2531 NEG 242 3236 10 EBV BLMF1 GLCTLVAML effector memory T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*02:01 B2M MHCI -532 chip0420_835313 14.69 12.12 Chip1 T1D_2 T1D TGCAGCGTGGGGACAGGGGGAACTAATGAAAAACTGTTTTTT CSVGTGGTNEKLFF TRBV29-1*01 TRBJ1-4*01 141.0 6009.0 _CSVGTGGTNEKLFF 638 1894 EBV-BLMF1 EBV 0.55 2531 NEG 203 1691 12 EBV BLMF1 GLCTLVAML effector T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*02:01 B2M MHCI -533 chip0420_716851 15.01 8.73 Chip1 T1D_2 T1D TGTGCCAGCAGCTCGGGTCTAGTCGCCCCCGGGGAGCTGTTTTTT CASSSGLVAPGELFF TRBV2*01 TRBJ2-2*01 28.0 809.0 _CASSSGLVAPGELFF 133 2419 EBV-BLMF1 EBV 0.67 2531 NEG 221 2198 12 EBV BLMF1 GLCTLVAML effector T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*02:01 B2M MHCI -534 chip0420_872865 10.86 10.77 Chip1 T1D_1 T1D _ 6746 3380 EBV-BRLF1 EBV 0.77 1264 NEG 224 3156 9 EBV BRLF1 YVLDHLIVV effector memory T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*02:01 B2M MHCI -535 chip0420_811962 13.6 9.97 Chip1 T1D_1 T1D TGTGTGGTGAACGGGGGGGATAGCAGCTATAAATTGATCTTC CVVNGGDSSYKLIF TRAV12-1*01 TRAJ12*01 2.0 33.0 TGTGCCAGCAGTTCGGGACAGGTACTTCCCAATGAGCAGTTCTTC CASSSGQVLPNEQFF TRBV2*01 TRBJ2-1*01 18.0 1101.0 CVVNGGDSSYKLIF_CASSSGQVLPNEQFF 31 5463 EBV-BLMF1 EBV 0.8 2531 NEG 203 5260 12 EBV BLMF1 GLCTLVAML effector T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*02:01 B2M MHCI -536 chip0420_646315 10.68 10.66 Chip1 T1D_1 T1D TGTGCTGTGGTCTCAAATTCCGGGTATGCACTCAACTTC CAVVSNSGYALNF TRAV21*01 TRAJ41*01 10.0 414.0 TGTGCCAGCAGTTCCGGAGGGGACGTGGATACGCAGTATTTT CASSSGGDVDTQYF TRBV7-3*01 TRBJ2-3*01 2.0 17.0 CAVVSNSGYALNF_CASSSGGDVDTQYF 1 5047 EBV-BLMF1 EBV 1.0 2531 NEG 200 4847 9 EBV BLMF1 GLCTLVAML effector memory T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*02:01 B2M MHCI -537 chip0420_514381 12.85 6.89 Chip1 T1D_1 T1D TGCGGCCCCGAGGAACCTAACGACTACAAGCTCAGCTTT CGPEEPNDYKLSF TRAV30*01 TRAJ20*01 36.0 2363.0 TGTGCCAGCAGCCCGGGACAGCTATCGAACACCGGGGAGCTGTTTTTT CASSPGQLSNTGELFF TRBV9*01 TRBJ2-2*01 2.0 41.0 CGPEEPNDYKLSF_CASSPGQLSNTGELFF 4 3503 EBV-BLMF1 EBV 0.43 2531 NEG 183 3320 10 EBV BLMF1 GLCTLVAML effector memory T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*02:01 B2M MHCI -538 chip0420_610306 0.7 8.7 Chip1 T1D_1 T1D TGTGCAATGAGCTTATCTAACTTTGGAAATGAGAAATTAACCTTT CAMSLSNFGNEKLTF TRAV12-3*01 TRAJ48*01 2.0 239.0 CAMSLSNFGNEKLTF_ 16 6223 PGT-178 PGT 0.68 1480 PGT-178 214 6009 4 HomoSapiens PGT LLAGIGTVPI Naive T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*02:01 B2M MHCI -539 chip0420_97718 10.7 10.83 Chip1 T1D_1 T1D TGTGCCAGCAGTCCGGACCAAACTAGCTCCTACAATGAGCAGTTCTTC CASSPDQTSSYNEQFF TRBV27*01 TRBJ2-1*01 24.0 1871.0 _CASSPDQTSSYNEQFF 47 2725 EBV-BRLF1 EBV 0.77 1264 EBV-BRLF1 219 2506 9 EBV BRLF1 YVLDHLIVV effector memory T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*02:01 B2M MHCI -540 chip0420_45418 9.75 9.16 Chip1 T1D_1 T1D TGTGCCGTGAAGGACACCGACAAGCTCATCTTT CAVKDTDKLIF TRAV8-1*01 TRAJ34*01 29.0 2423.0 TGTGCCAGCAGTCTTTTTTCGAGTGAGCAGTTCTTC CASSLFSSEQFF TRBV28*01 TRBJ2-1*01 47.0 3911.0 CAVKDTDKLIF_CASSLFSSEQFF 1 5536 EBV-BRLF1 EBV 0.86 1264 EBV-BRLF1 213 5323 8 EBV BRLF1 YVLDHLIVV effector memory T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*02:01 B2M MHCI -541 chip0420_509910 13.98 10.83 Chip1 T1D_2 T1D TATCCCGTGAAATCAGGCTACAGCACACTCACCTTT YPVKSGYSTLTF TRAV8-1*01 TRAJ11*01 6.0 375.0 YPVKSGYSTLTF_ 1 1890 EBV-BRLF1 EBV 0.94 1264 EBV-BRLF1 233 1657 12 EBV BRLF1 YVLDHLIVV effector T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*02:01 B2M MHCI -542 chip0420_262124 10.26 6.95 Chip1 T1D_2 T1D TGTGCCAGCAGTTTAGCGCAGGTAGCGGGAGGGAATGAGCAGTTCTTC CASSLAQVAGGNEQFF TRBV12-3*01,TRBV12-4*01 TRBJ2-1*01 9.0 498.0 _CASSLAQVAGGNEQFF 2 4196 EBV-BLMF1 EBV 0.89 2531 EBV-BLMF1 208 3988 10 EBV BLMF1 GLCTLVAML effector memory T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*02:01 B2M MHCI -543 chip0420_79942 6.28 11.38 Chip1 T1D_1 T1D _ 6746 5220 PGT-178 PGT 0.76 1480 PGT-178 231 4989 7 HomoSapiens PGT LLAGIGTVPI transitional T cells between effector and memory populations PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*02:01 B2M MHCI -544 chip0420_532950 12.9 10.55 Chip1 T1D_2 T1D TGTGCAGAGAGTACTTCGGGAGGAAAGCTTATCTTC CAESTSGGKLIF TRAV5*01 TRAJ23*01 2.0 379.0 TGCAGCGTGGGGACAGGGGGAACTAATGAAAAACTGTTTTTT CSVGTGGTNEKLFF TRBV29-1*01 TRBJ1-4*01 28.0 954.0 CAESTSGGKLIF_CSVGTGGTNEKLFF 107 3416 EBV-BLMF1 EBV 0.89 2531 NEG 209 3207 9 EBV BLMF1 GLCTLVAML effector memory T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*02:01 B2M MHCI -545 chip0420_787316 -2.06 10.14 Chip1 T1D_1 T1D _ 6746 6391 PGT-178 PGT 0.45 1480 PGT-178 210 6181 3 HomoSapiens PGT LLAGIGTVPI Naive T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*02:01 B2M MHCI -546 chip0420_559633 14.71 8.56 Chip1 T1D_2 T1D TGTGCAGAGAGTACTTCGGGAGGCACGCGTCTCTTC CAESTSGGTRLF TRAV5*01 TRAJ23*01 3.0 204.0 TGCAGCGTGGGGACAGGGGGAACTAATGAAAAACTGTTTTTT CSVGTGGTNEKLFF TRBV29-1*01 TRBJ1-4*01 140.0 7333.0 CAESTSGGTRLF_CSVGTGGTNEKLFF 1 2413 EBV-BLMF1 EBV 0.67 2531 NEG 227 2186 12 EBV BLMF1 GLCTLVAML effector T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*02:01 B2M MHCI -547 chip0420_115020 11.31 7.02 Chip1 T1D_2 T1D TGCAGCGTGGGGACAGGGGGAACTAATGAAAAACTGTTTTTT CSVGTGGTNEKLFF TRBV29-1*01 TRBJ1-4*01 136.0 6820.0 _CSVGTGGTNEKLFF 638 3714 EBV-BLMF1 EBV 0.75 2531 NEG 216 3498 10 EBV BLMF1 GLCTLVAML effector memory T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*02:01 B2M MHCI -548 chip0420_780621 5.52 11.64 Chip1 T1D_2 T1D TGTGCAGGGCCCGTGGATGGAGGAAGCCAAGGAAATCTCATCTTT CAGPVDGGSQGNLIF TRAV25*01 TRAJ42*01 41.0 2190.0 CAGPVDGGSQGNLIF_ 1 4622 M1 FLU 0.75 1250 NEG 202 4420 6 InfluenzaA M1 GILGFVFTL central memory T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*02:01 B2M MHCI -549 chip0420_220476 8.2 9.55 Chip1 T1D_2 T1D TGCAGCGTGGGGACAGGGGGAACTAATGAAAAACTGTTTTTT CSVGTGGTNEKLFF TRBV29-1*01 TRBJ1-4*01 238.0 10122.0 _CSVGTGGTNEKLFF 638 6126 EBV-BLMF1 EBV 0.83 2531 NEG 197 5929 8 EBV BLMF1 GLCTLVAML effector memory T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*02:01 B2M MHCI -550 chip0420_765597 7.86 9.99 Chip1 T1D_2 T1D TGTGCCTGGAGTGTACAGCTAGCGGGAGTAGACGAGCAGTACTTC CAWSVQLAGVDEQYF TRBV30*01 TRBJ2-7*01 42.0 1973.0 _CAWSVQLAGVDEQYF 11 5547 EBV-BRLF1 EBV 0.81 1264 EBV-BRLF1 187 5360 8 EBV BRLF1 YVLDHLIVV effector memory T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*02:01 B2M MHCI -551 chip0420_645970 9.97 7.15 Chip1 T1D_1 T1D TGCGGCCCAGAGGAACCTAACAACTACAAGCTCAGCTTT CGPEEPNNYKLSF TRAV30*01 TRAJ20*01 15.0 801.0 GGTGCCAGCAGCACGGGACAGCTATCGAACACCGGGGAGCTGTTTTTT GASSTGQLSNTGELFF TRBV9*01 TRBJ2-2*01 27.0 1631.0 CGPEEPNNYKLSF_GASSTGQLSNTGELFF 1 3331 EBV-BLMF1 EBV 0.59 2531 EBV-BLMF1 185 3146 10 EBV BLMF1 GLCTLVAML effector memory T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*02:01 B2M MHCI -552 chip0420_160096 15.08 11.85 Chip1 T1D_2 T1D _ 6746 1771 EBV-BRLF1 EBV 1.0 1264 NEG 193 1578 12 EBV BRLF1 YVLDHLIVV effector T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*02:01 B2M MHCI -553 chip0420_780399 14.11 8.57 Chip1 T1D_2 T1D TGTGCCGTGAAAGACACCGACAAGCTCATCTTT CAVKDTDKLIF TRAV8-1*01 TRAJ34*01 5.0 401.0 CAVKDTDKLIF_ 56 2121 EBV-BRLF1 EBV 0.96 1264 EBV-BRLF1 189 1932 10 EBV BRLF1 YVLDHLIVV effector memory T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*02:01 B2M MHCI -554 chip0420_491981 13.1 6.32 Chip1 T1D_1 T1D _ 6746 3679 EBV-LMP2-FLY EBV 1.0 355 EBV-LMP2-FLY 255 3424 10 EBV LMP2 FLYALALLL effector memory T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*02:01 B2M MHCI -555 chip0420_205260 10.93 7.21 Chip1 T1D_2 T1D _ 6746 2615 EBV-BLMF1 EBV 1.0 2531 NEG 208 2407 10 EBV BLMF1 GLCTLVAML effector memory T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*02:01 B2M MHCI -556 chip0420_788215 -3.13 8.78 Chip1 T1D_1 T1D TGTGCAGCAAGCGAGAATGAGAAATTAACCTTT CAASENEKLTF TRAV13-1*01 TRAJ48*01 5.0 267.0 CAASENEKLTF_ 1 6370 ZNT8-228-236 ZNT8 0.83 8 ZNT8-228-236 186 6184 2 HomoSapiens ZNT8 SISVLISAL Naive T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*02:01 B2M MHCI -557 chip0420_555168 15.53 10.16 Chip1 T1D_2 T1D TGCAGCGTGGGGACAGGGGGAACTAATGAAAAACTGTTTTTT CSVGTGGTNEKLFF TRBV29-1*01 TRBJ1-4*01 139.0 7329.0 _CSVGTGGTNEKLFF 638 2883 EBV-BLMF1 EBV 0.75 2531 NEG 205 2678 12 EBV BLMF1 GLCTLVAML effector T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*02:01 B2M MHCI -558 chip0420_274060 11.8 7.21 Chip1 T1D_2 T1D TGTGCTTCCCTAACCCCGGGGGCTTCCAAGATAATCTTT CASLTPGASKIIF TRAV8-6*01 TRAJ3*01 16.0 1407.0 TGTGCCAGCAGCTCGGGACTAGTCGCCCCCGGGGAGCTGTTTTTT CASSSGLVAPGELFF TRBV2*01 TRBJ2-2*01 58.0 3589.0 CASLTPGASKIIF_CASSSGLVAPGELFF 38 4486 EBV-BLMF1 EBV 0.75 2531 NEG 210 4276 10 EBV BLMF1 GLCTLVAML effector memory T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*02:01 B2M MHCI -559 chip0420_746881 -2.71 9.27 Chip1 T1D_2 T1D TGTGCCAGCAGTCCGTCCCGGGACAGGGGACCTAATGAAAAACTGTTTTTT CASSPSRDRGPNEKLFF TRBV27*01 TRBJ1-4*01 62.0 2031.0 _CASSPSRDRGPNEKLFF 1 4977 GP160-311-320 HIV 0.64 109 NEG 200 4777 2 HIV-1 GP160 RGPGRAFVTI Naive T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*02:01 B2M MHCI -560 chip0420_333964 10.5 10.94 Chip1 T1D_1 T1D TGTGCCAGCAGTGACGGTCGGGTCCACCCGGGGACCCAGTACTTC CASSDGRVHPGTQYF TRBV2*01 TRBJ2-5*01 21.0 1418.0 _CASSDGRVHPGTQYF 24 3811 EBV-BLMF1 EBV 0.55 2531 NEG 200 3611 9 EBV BLMF1 GLCTLVAML effector memory T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*02:01 B2M MHCI -561 chip0420_302556 7.64 9.94 Chip1 T1D_2 T1D TGTGCAGCATACGCAGGCAACATGCTCACCTTT CAAYAGNMLTF TRAV29/DV5*01 TRAJ39*01 3.0 347.0 TGCGCCAGCAGGATGGGGGCCGGGGATACGCAGTATTTT CASRMGAGDTQYF TRBV10-2*01 TRBJ2-3*01 16.0 844.0 CAAYAGNMLTF_CASRMGAGDTQYF 21 6048 EBV-BLMF1 EBV 0.83 2531 NEG 238 5810 7 EBV BLMF1 GLCTLVAML transitional T cells between effector and memory populations PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*02:01 B2M MHCI -562 chip0420_112838 -3.74 8.57 Chip1 T1D_1 T1D TGTGCCGCCGACTCAGGAAACACACCTCTTGTCTTT CAADSGNTPLVF TRAV12-2*01 TRAJ29*01 25.0 2059.0 TGTGCCAGCGGGAGGTCCGGGGAGCTGTTTTTT CASGRSGELFF TRBV9*01 TRBJ2-2*01 47.0 4256.0 CAADSGNTPLVF_CASGRSGELFF 1 5395 MART1-ALA MART1 0.48 269 MART1-ALA 188 5207 2 HomoSapiens MART1 ALAGIGILTV Naive T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*02:01 B2M MHCI -563 chip0420_68413 -3.22 13.91 Chip1 T1D_2 T1D _ 6746 2291 CVB3-P3A CVB 0.75 77 NEG 186 2105 1 CoxsackievirusB P3A GIIYIIYKL Naive T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*02:01 B2M MHCI -564 chip0420_754781 15.72 10.04 Chip1 T1D_1 T1D TGTGCCAGTAGTCCCCACTTGGGTGCGGCGGCCGAGCAGTACTTC CASSPHLGAAAEQYF TRBV19*01 TRBJ2-7*01 17.0 1157.0 _CASSPHLGAAAEQYF 10 4109 EBV-BRLF1 EBV 0.61 1264 EBV-BRLF1 178 3931 12 EBV BRLF1 YVLDHLIVV effector T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*02:01 B2M MHCI -565 chip0420_865599 -2.6 10.27 Chip1 T1D_1 T1D TGTGCAATGAGTAGGTCTAACTTTGGAAATGAGAAATTAACCTTT CAMSRSNFGNEKLTF TRAV12-3*01 TRAJ48*01 60.0 2280.0 TGCAGTGCTAGCCATCGCGGACTAGCGGGAGTTAGAGAGACCCAGTACTTC CSASHRGLAGVRETQYF TRBV20-1*01 TRBJ2-5*01 26.0 1880.0 CAMSRSNFGNEKLTF_CSASHRGLAGVRETQYF 1 4521 PGT-178 PGT 0.85 1480 PGT-178 215 4306 3 HomoSapiens PGT LLAGIGTVPI Naive T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*02:01 B2M MHCI -566 chip0420_649863 -1.35 6.75 Chip1 T1D_2 T1D TGTGCTACGGACGGTAGTGCCAGACTCATGTTT CATDGSARLMF TRAV17*01 TRAJ31*01 34.0 2486.0 CATDGSARLMF_ 1 8297 PTPRN-180-188 PTPRN 0.68 18 PTPRN-180-188 182 8115 3 HomoSapiens PTPRN LLPPLLEHL Naive T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*02:01 B2M MHCI -567 chip0420_578478 14.35 10.37 Chip1 T1D_1 T1D TGTGCCAGCAGTTCGGGACAGGTACTTCCCAATGAGCAGTTCTTC CASSSGQVLPNEQFF TRBV2*01 TRBJ2-1*01 44.0 1639.0 _CASSSGQVLPNEQFF 61 5774 EBV-BLMF1 EBV 0.4 2531 NEG 198 5576 12 EBV BLMF1 GLCTLVAML effector T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*02:01 B2M MHCI -568 chip0420_604692 11.76 6.67 Chip1 T1D_2 T1D TGTGCCAGTAGTATAGGACAAAACCGGGGAGCTGTTTTTT CASSIGca??aaTGELFF TRBV19*01 TRBJ2-2*01 38.0 1766.0 _CASSIGca??aaTGELFF 1 2851 ZNT8-200-208 ZNT8 0.63 1 NEG 184 2667 10 HomoSapiens ZNT8 CLGHNHKEV effector memory T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*02:01 B2M MHCI -569 chip0420_567241 9.55 9.48 Chip1 T1D_1 T1D _ 6746 4778 EBV-BLMF1 EBV 0.75 2531 NEG 201 4577 8 EBV BLMF1 GLCTLVAML effector memory T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*02:01 B2M MHCI -570 chip0420_167758 9.4 10.33 Chip1 T1D_2 T1D TGCGCCAGCAGAGCGGGAGCCGGGGATACGCAGTATTTT CASRAGAGDTQYF TRBV10-2*01 TRBJ2-3*01 74.0 3606.0 _CASRAGAGDTQYF 59 5142 EBV-BLMF1 EBV 0.79 2531 EBV-BLMF1 214 4928 9 EBV BLMF1 GLCTLVAML effector memory T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*02:01 B2M MHCI -571 chip0420_742727 9.42 9.83 Chip1 T1D_2 T1D TGTGTGGTGAACGGCAGGGATAGCAGCTATAAATTGATCTTC CVVNGRDSSYKLIF TRAV12-1*01 TRAJ12*01 44.0 2140.0 TGTGCCAGCAGCTCGGGACTAGTCGCCCCCGGGGAGCTGTTTTTT CASSSGLVAPGELFF TRBV2*01 TRBJ2-2*01 31.0 2268.0 CVVNGRDSSYKLIF_CASSSGLVAPGELFF 98 5420 EBV-BLMF1 EBV 0.48 2531 NEG 192 5228 8 EBV BLMF1 GLCTLVAML effector memory T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*02:01 B2M MHCI -572 chip0420_244535 11.77 8.38 Chip1 T1D_2 T1D _ 6746 3125 EBV-BLMF1 EBV 0.78 2531 NEG 193 2932 10 EBV BLMF1 GLCTLVAML effector memory T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*02:01 B2M MHCI -573 chip0420_89366 6.39 14.37 Chip1 T1D_1 T1D TGTGCTGTGGCCCAGCAATGACATGCGCTTT CAVAQ??cNDMRF TRAV36/DV7*01 TRAJ43*01 25.0 2083.0 TGTGCCAGTAGTAGTAGGAGCACAGATACGCAGTATTTT CASSSRSTDTQYF TRBV19*01 TRBJ2-3*01 16.0 855.0 CAVAQ??cNDMRF_CASSSRSTDTQYF 1 4090 M1 FLU 0.8 1250 M1 210 3880 7 InfluenzaA M1 GILGFVFTL transitional T cells between effector and memory populations PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*02:01 B2M MHCI -574 chip0420_36251 5.46 10.86 Chip1 T1D_1 T1D TGTGCCAGCAGTGTGCAGGGAGGTAACTATGGCTACACCTTC CASSVQGGNYGYTF TRBV6-1*01 TRBJ1-2*01 34.0 1427.0 _CASSVQGGNYGYTF 5 5267 EBV-LMP2-FLY EBV 0.86 355 EBV-LMP2-FLY 187 5080 6 EBV LMP2 FLYALALLL central memory T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*02:01 B2M MHCI -575 chip0420_192178 -2.67 10.19 Chip1 T1D_1 T1D _ 6746 4926 PGT-178 PGT 0.73 1480 PGT-178 193 4733 3 HomoSapiens PGT LLAGIGTVPI Naive T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*02:01 B2M MHCI -576 chip0420_688064 11.64 12.54 Chip1 T1D_2 T1D TGTGCCGTGAACCTATACAGCACCCTCACCTTT CAVNLYSTLTF TRAV8-1*01 TRAJ11*01 3.0 307.0 CAVNLYSTLTF_ 3 2150 EBV-BRLF1 EBV 1.0 1264 EBV-BRLF1 209 1941 11 EBV BRLF1 YVLDHLIVV effector T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*02:01 B2M MHCI -577 chip0420_724861 10.34 10.76 Chip1 T1D_1 T1D TGTGCCAGCAGTTCGGGACAGGTACTTCCCAATGAGCAGTTCTTC CASSSGQVLPNEQFF TRBV2*01 TRBJ2-1*01 36.0 1690.0 _CASSSGQVLPNEQFF 61 4204 EBV-BLMF1 EBV 0.85 2531 NEG 237 3967 9 EBV BLMF1 GLCTLVAML effector memory T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*02:01 B2M MHCI -578 chip0420_470602 11.22 7.4 Chip1 T1D_2 T1D _ 6746 4172 EBV-BLMF1 EBV 0.71 2531 EBV-BLMF1 196 3976 10 EBV BLMF1 GLCTLVAML effector memory T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*02:01 B2M MHCI -579 chip0420_197995 11.63 7.23 Chip1 T1D_2 T1D TGTGCCTGGAGAGGAGAACCCTCCTACAATGAGCAGTTCTTC CAWRGEPSYNEQFF TRBV30*01 TRBJ2-1*01 28.0 2022.0 _CAWRGEPSYNEQFF 3 2894 EBV-BRLF1 EBV 0.9 1264 EBV-BRLF1 236 2658 10 EBV BRLF1 YVLDHLIVV effector memory T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*02:01 B2M MHCI -580 chip0420_741299 -0.09 8.89 Chip1 T1D_2 T1D TGTGCCGTCCCTTCAGGAAACACACCTCTTGTCTTT CAVPSGNTPLVF TRAV12-2*01 TRAJ29*01 22.0 2157.0 TGTGCCAGCAGCTCACAGGGAGGGGGCACCGGGGAGCTGTTTTTT CASSSQGGGTGELFF TRBV13*01 TRBJ2-2*01 43.0 1971.0 CAVPSGNTPLVF_CASSSQGGGTGELFF 1 4363 PGT-178 PGT 0.59 1480 PGT-178 196 4167 4 HomoSapiens PGT LLAGIGTVPI Naive T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*02:01 B2M MHCI -581 chip0420_845945 11.71 10.33 Chip1 T1D_1 T1D TGTGTGGTGAACGGGGGGGATAGCAGCTATAAATTGATCTTC CVVNGGDSSYKLIF TRAV12-1*01 TRAJ12*01 11.0 816.0 TGTGCAGAGAATATTATAACACCGACAAGCTCATCTTT CAENIIa?cTDKLIF TRAV13-2*01 TRAJ34*01 33.0 2021.0 0.67 TGTGCCAGCAGTTCGGGACAGGTACTTCCCAATGAGCAGTTCTTC CASSSGQVLPNEQFF TRBV2*01 TRBJ2-1*01 56.0 4243.0 CVVNGGDSSYKLIF_CASSSGQVLPNEQFF 31 4464 EBV-BLMF1 EBV 0.67 2531 NEG 216 4248 9 EBV BLMF1 GLCTLVAML effector memory T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*02:01 B2M MHCI -582 chip0420_170564 13.52 6.74 Chip1 T1D_1 T1D TGTGCCACCCAACAGGGGAGGGACAGTCAGCCCCAGCATTTT CATQQGRDSQPQHF TRBV28*01 TRBJ1-5*01 44.0 1611.0 _CATQQGRDSQPQHF 52 4029 EBV-BLMF1 EBV 0.79 2531 EBV-BLMF1 224 3805 10 EBV BLMF1 GLCTLVAML effector memory T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*02:01 B2M MHCI -583 chip0420_42297 8.44 9.16 Chip1 T1D_2 T1D _ 6746 4620 EBV-BLMF1 EBV 0.71 2531 NEG 216 4404 8 EBV BLMF1 GLCTLVAML effector memory T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*02:01 B2M MHCI -584 chip0420_293210 8.22 7.94 Chip1 T1D_1 T1D TGTGCTGTGAGAGTCATGCACCGAGCTGTCACGATCATCTTT CAVRVMHRAVTIIF TRAV3*01 TRAJ30*01 8.0 70.0 CAVRVMHRAVTIIF_ 1 7368 IGRP-215-223 IGRP 0.57 5 NEG 212 7156 8 HomoSapiens IGRP FLFAVGFYL effector memory T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*02:01 B2M MHCI -585 chip0420_142462 13.74 6.99 Chip1 T1D_2 T1D TGCAGCGTGGGGACAGGGGGAACTAATGAAAAACTGTTTTTT CSVGTGGTNEKLFF TRBV29-1*01 TRBJ1-4*01 77.0 3916.0 _CSVGTGGTNEKLFF 638 4850 EBV-BLMF1 EBV 0.67 2531 NEG 216 4634 10 EBV BLMF1 GLCTLVAML effector memory T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*02:01 B2M MHCI -586 chip0420_157538 10.27 10.3 Chip1 T1D_1 T1D TGTGCTGTGGTCTCAAATTCCGGGTATGCACTCAACTTC CAVVSNSGYALNF TRAV21*01 TRAJ41*01 39.0 2101.0 TGTGCCAGCAGTTACCCAAAGCTGAGGCCTACAATGAGCAGTTCTTC CASSYPKct?EAYNEQFF TRBV6-5*01 TRBJ2-1*01 34.0 1090.0 CAVVSNSGYALNF_CASSYPKct?EAYNEQFF 1 3066 EBV-BLMF1 EBV 0.67 2531 NEG 219 2847 9 EBV BLMF1 GLCTLVAML effector memory T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*02:01 B2M MHCI -587 chip0420_276819 13.01 6.57 Chip1 T1D_1 T1D TGTGTGGTGAACGGGGGGGATAGCAGCTATAAATTGATCTTC CVVNGGDSSYKLIF TRAV12-1*01 TRAJ12*01 62.0 2166.0 TGTGCCAGCAGTGAGGGCAGGGTAGCTCCAGGCGAGCAGTACTTC CASSEGRVAPGEQYF TRBV2*01 TRBJ2-7*01 22.0 827.0 CVVNGGDSSYKLIF_CASSEGRVAPGEQYF 2 3170 EBV-BLMF1 EBV 0.6 2531 NEG 205 2965 10 EBV BLMF1 GLCTLVAML effector memory T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*02:01 B2M MHCI -588 chip0420_228368 5.81 12.93 Chip1 T1D_1 T1D TGTGCTGTGAGTGCTCGGGCTGGCGGCTTCAAAACTATCTTT CAVSARAGGFKTIF TRAV8-4*01 TRAJ9*01 2.0 11.0 TGTGCCAGCAGCTCGGGACTAGTCGCCCCCGGGGAGCTGTTTTTT CASSSGLVAPGELFF TRBV2*01 TRBJ2-2*01 2.0 82.0 CAVSARAGGFKTIF_CASSSGLVAPGELFF 1 5261 M1 FLU 0.7 1250 M1 215 5046 7 InfluenzaA M1 GILGFVFTL transitional T cells between effector and memory populations PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*02:01 B2M MHCI -589 chip0420_535266 16.05 11.06 Chip1 T1D_2 T1D _ 6746 2215 EBV-BLMF1 EBV 0.5 2531 NEG 208 2007 12 EBV BLMF1 GLCTLVAML effector T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*02:01 B2M MHCI -590 chip0420_503840 10.95 8.56 Chip1 T1D_1 T1D TGTGCTCTCTATAACACCGACAAGCTCATCTTT CALYNTDKLIF TRAV9-2*01 TRAJ34*01 27.0 2172.0 TGTGCCAGCAGCCCAGTTAGCGGGTCAACCTACGAGCAGTACTTC CASSPVSGSTYEQYF TRBV3-1*01 TRBJ2-7*01 19.0 841.0 CALYNTDKLIF_CASSPVSGSTYEQYF 15 3792 EBV-BLMF1 EBV 0.9 2531 EBV-BLMF1 215 3577 10 EBV BLMF1 GLCTLVAML effector memory T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*02:01 B2M MHCI -591 chip0420_47381 6.21 12.4 Chip1 T1D_1 T1D TGTGCTGTGCCCCTGGGGGGTTTTCTGGTGGCTACGGTTGGCTGATTTTT CAVPLGGFc?tGGYGWLIF TRAV20*01 TRAJ4*01 37.0 1125.0 CAVPLGGFc?tGGYGWLIF_ 1 4936 M1 FLU 0.73 1250 M1 224 4712 7 InfluenzaA M1 GILGFVFTL transitional T cells between effector and memory populations PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*02:01 B2M MHCI -592 chip0420_324049 11.49 8.1 Chip1 T1D_2 T1D _ 6746 3386 EBV-BLMF1 EBV 0.71 2531 NEG 202 3184 10 EBV BLMF1 GLCTLVAML effector memory T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*02:01 B2M MHCI -593 chip0420_283771 11.03 8.92 Chip1 T1D_2 T1D TGCAGCGTTGACCAAAGGACAGGGCAAAAGAAGAACTATGGCTACACCTTC CSVDQRTGQKKNYGYTF TRBV29-1*01 TRBJ1-2*01 104.0 5902.0 _CSVDQRTGQKKNYGYTF 40 3139 EBV-BLMF1 EBV 0.83 2531 NEG 239 2900 10 EBV BLMF1 GLCTLVAML effector memory T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*02:01 B2M MHCI -594 chip0420_438703 9.7 9.91 Chip1 T1D_1 T1D TGTGCAGAGGCGGCCAACCAGGCAGGGACTGCTCTGATCTTT CAEAANQAGTALIF TRAV5*01 TRAJ15*01 37.0 2161.0 TGTGCCAGCAGCCAAAGCCCGGGTGGTACGCAGTATTTT CASSQSPGGTQYF TRBV14*01 TRBJ2-3*01 39.0 1493.0 CAEAANQAGTALIF_CASSQSPGGTQYF 9 7583 EBV-BLMF1 EBV 0.45 2531 NEG 217 7366 9 EBV BLMF1 GLCTLVAML effector memory T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*02:01 B2M MHCI -595 chip0420_878228 12.81 6.97 Chip1 T1D_1 T1D TGTGCCAACAGCCCAGTTAGCGGGTCAACCTACGAGCAGTACTTC CANSPVSGSTYEQYF TRBV3-1*01 TRBJ2-7*01 26.0 1833.0 _CANSPVSGSTYEQYF 1 3734 EBV-BLMF1 EBV 1.0 2531 EBV-BLMF1 228 3506 10 EBV BLMF1 GLCTLVAML effector memory T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*02:01 B2M MHCI -596 chip0420_620398 9.11 9.78 Chip1 T1D_2 T1D TGTGCTGTCATGAACACAGGCTTTCAGAAACTTGTATTT CAVMNTGFQKLVF TRAV8-3*01 TRAJ8*01 39.0 2108.0 CAVMNTGFQKLVF_ 2 4937 EBV-BRLF1 EBV 1.0 1264 EBV-BRLF1 216 4721 8 EBV BRLF1 YVLDHLIVV effector memory T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*02:01 B2M MHCI -597 chip0420_85497 13.58 7.45 Chip1 T1D_2 T1D TGTGCCAGCAGCTCGGGACTAGTCGCCCCCGGGGAGCTGTTTTTT CASSSGLVAPGELFF TRBV2*01 TRBJ2-2*01 1.0 87.0 _CASSSGLVAPGELFF 133 3133 EBV-BLMF1 EBV 0.47 2531 NEG 215 2918 10 EBV BLMF1 GLCTLVAML effector memory T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*02:01 B2M MHCI -598 chip0420_855446 6.16 13.91 Chip1 T1D_1 T1D TGTGCCAGTAGTGTCAGGGCAGGAGAGACCCAGTACTTC CASSVRAGETQYF TRBV19*01 TRBJ2-5*01 11.0 820.0 _CASSVRAGETQYF 23 4196 M1 FLU 0.73 1250 M1 202 3994 7 InfluenzaA M1 GILGFVFTL transitional T cells between effector and memory populations PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*02:01 B2M MHCI -599 chip0420_238078 6.43 12.34 Chip1 T1D_1 T1D _ 6746 5017 M1 FLU 0.83 1250 M1 207 4810 7 InfluenzaA M1 GILGFVFTL transitional T cells between effector and memory populations PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*02:01 B2M MHCI -600 chip0420_407753 9.67 10.05 Chip1 T1D_1 T1D TGCAGTGCTAACGACCACACCTACAATGAGCAGTTCTTC CSANDHTYNEQFF TRBV20-1*01 TRBJ2-1*01 2.0 135.0 _CSANDHTYNEQFF 2 6246 EBV-BRLF1 EBV 0.94 1264 EBV-BRLF1 206 6040 9 EBV BRLF1 YVLDHLIVV effector memory T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*02:01 B2M MHCI -601 chip0420_736636 5.87 11.42 Chip1 T1D_1 T1D _ 6746 7182 IAPP-5-13 IAPP 1.0 30 IAPP-5-13 196 6986 6 HomoSapiens IAPP KLQVFLIVL central memory T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*02:01 B2M MHCI -602 chip0420_599832 9.97 10.97 Chip1 T1D_2 T1D TGTGCTCTATGCGGGGGAGGCGGCAACAAACTCACCCTT CALCGGGGNKLTL TRAV16*01 TRAJ10*01 34.0 2316.0 TGCGCCAGCAGACAGGGGGATGGAGATACGCAGTATTTT CASRQGDGDTQYF TRBV10-2*01 TRBJ2-3*01 23.0 1083.0 CALCGGGGNKLTL_CASRQGDGDTQYF 1 3395 EBV-BLMF1 EBV 0.85 2531 NEG 192 3203 9 EBV BLMF1 GLCTLVAML effector memory T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*02:01 B2M MHCI -603 chip0420_262115 10.59 6.65 Chip1 T1D_1 T1D TGTGCCAGCAGCCAAAGCCCGGGTGGTACGCAGTATTTT CASSQSPGGTQYF TRBV14*01 TRBJ2-3*01 2.0 181.0 _CASSQSPGGTQYF 94 4633 EBV-BLMF1 EBV 0.5 2531 NEG 207 4426 10 EBV BLMF1 GLCTLVAML effector memory T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*02:01 B2M MHCI -604 chip0420_45240 13.39 10.4 Chip1 T1D_1 T1D TGCAGTGCTAGAGACGGCTCCGGGACAGTCGATTCACCCCTCCACTTT CSARDGSGTVDSPLHF TRBV20-1*01 TRBJ1-6*01 25.0 1504.0 _CSARDGSGTVDSPLHF 2 3461 EBV-BLMF1 EBV 0.82 2531 NEG 178 3283 9 EBV BLMF1 GLCTLVAML effector memory T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*02:01 B2M MHCI -605 chip0420_529 8.06 8.48 Chip1 T1D_1 T1D TGTGCCGTGAAGGCCACCGACAAGCTCCTCTTT CAVKATDKLLF TRAV8-3*01 TRAJ34*01 21.0 2081.0 CAVKATDKLLF_ 1 9329 EBV-BRLF1 EBV 0.47 1264 EBV-BRLF1 211 9118 8 EBV BRLF1 YVLDHLIVV effector memory T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*02:01 B2M MHCI -606 chip0420_462339 7.75 10.28 Chip1 T1D_2 T1D TGTGCCAACACCCCCGATATTAACACTGAAGCTTTCTTT CANTPDINTEAFF TRBV6-1*01 TRBJ1-1*01 16.0 360.0 _CANTPDINTEAFF 1 4888 EBV-BLMF1 EBV 0.44 2531 NEG 193 4695 7 EBV BLMF1 GLCTLVAML transitional T cells between effector and memory populations PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*02:01 B2M MHCI -607 chip0420_176332 9.55 10.87 Chip1 T1D_2 T1D _ 6746 3323 EBV-BLMF1 EBV 0.5 2531 NEG 195 3128 9 EBV BLMF1 GLCTLVAML effector memory T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*02:01 B2M MHCI -608 chip0420_85075 6.09 13.96 Chip1 T1D_1 T1D _ 6746 4156 M1 FLU 0.96 1250 M1 212 3944 7 InfluenzaA M1 GILGFVFTL transitional T cells between effector and memory populations PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*02:01 B2M MHCI -609 chip0420_692496 10.73 7.02 Chip1 T1D_1 T1D TGTGCCAGCAGTTCCGGAGGGAACGTGGATACGCAGTATTTT CASSSGGNVDTQYF TRBV7-3*01 TRBJ2-3*01 23.0 1182.0 _CASSSGGNVDTQYF 47 4540 EBV-BLMF1 EBV 0.5 2531 NEG 240 4300 10 EBV BLMF1 GLCTLVAML effector memory T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*02:01 B2M MHCI -610 chip0420_480647 6.03 13.37 Chip1 T1D_1 T1D TGTGCCAGTAGTATAAATGGGGGCCGGCGGGATGGCTACACCTTC CASSINGGRRDGYTF TRBV19*01 TRBJ1-2*01 10.0 278.0 _CASSINGGRRDGYTF 32 4639 M1 FLU 0.81 1250 NEG 181 4458 7 InfluenzaA M1 GILGFVFTL transitional T cells between effector and memory populations PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*02:01 B2M MHCI -611 chip0420_749548 -0.41 9.6 Chip1 T1D_1 T1D _ 6746 4942 KI10 FLU 0.75 2 NEG 200 4742 3 InfluenzaA HA KLYQNPTTYI Naive T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*02:01 B2M MHCI -612 chip0420_133646 13.59 7.36 Chip1 T1D_2 T1D TGTGCCAGCAACTTAGCGGGGAACAATGAGCAGTTCTTC CASNLAGNNEQFF TRBV9*01 TRBJ2-1*01 31.0 2234.0 _CASNLAGNNEQFF 15 3064 EBV-BLMF1 EBV 0.67 2531 NEG 242 2822 10 EBV BLMF1 GLCTLVAML effector memory T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*02:01 B2M MHCI -613 chip0420_764390 11.85 12.33 Chip1 T1D_1 T1D TGTGCCAGCAGGGGCCTGCCCGGGGGCGGGCGTGAAGCTTTCTTT CASRGLPGGGREAFF TRBV28*01 TRBJ1-1*01 3.0 155.0 _CASRGLPGGGREAFF 1 2125 EBV-BRLF1 EBV 0.54 1264 NEG 197 1928 11 EBV BRLF1 YVLDHLIVV effector T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*02:01 B2M MHCI -614 chip0420_596229 11.38 7.62 Chip1 T1D_1 T1D TGTGCTGTGGAACCTGCTTACTACCTCAGGAACCTACAAATACATCTTT CAVEPAYY??cSGTYKYIF TRAV2*01 TRAJ40*01 6.0 529.0 CAVEPAYY??cSGTYKYIF_ 1 3923 EBV-LMP2-FLY EBV 0.89 355 EBV-LMP2-FLY 189 3734 10 EBV LMP2 FLYALALLL effector memory T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*02:01 B2M MHCI -615 chip0420_500857 9.45 10.31 Chip1 T1D_2 T1D TGCAGCGTGGGGACAGGGGGAACTAATGAAAAACTGTTTTTT CSVGTGGTNEKLFF TRBV29-1*01 TRBJ1-4*01 42.0 1867.0 _CSVGTGGTNEKLFF 638 4367 EBV-BLMF1 EBV 0.67 2531 NEG 190 4177 9 EBV BLMF1 GLCTLVAML effector memory T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*02:01 B2M MHCI -616 chip0420_67149 7.85 8.77 Chip1 tet_neg TGTGCCAGCAGTGTGCAGGGAGGTAACTATGGCTACACCTTC CASSVQGGNYGYTF TRBV6-1*01 TRBJ1-2*01 14.0 802.0 _CASSVQGGNYGYTF 5 7138 EBV-LMP2-FLY EBV 0.89 355 EBV-LMP2-FLY 183 6955 8 EBV LMP2 FLYALALLL effector memory T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*02:01 B2M MHCI -617 chip0420_665015 10.83 6.62 Chip1 T1D_1 T1D TGCAGCGTCGGCTCCAGGGGAACTAATGAAAAACTGTTTTTT CSVGSRGTNEKLFF TRBV29-1*01 TRBJ1-4*01 188.0 10787.0 _CSVGSRGTNEKLFF 283 4004 EBV-BLMF1 EBV 0.93 2531 NEG 196 3808 10 EBV BLMF1 GLCTLVAML effector memory T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*02:01 B2M MHCI -618 chip0420_200841 10.03 7.3 Chip1 T1D_2 T1D TGTGCCTGGGGTGTACAGCTAGCGGGAGTAGACGAGCAGTACTTC CAWGVQLAGVDEQYF TRBV30*01 TRBJ2-7*01 28.0 1198.0 _CAWGVQLAGVDEQYF 1 3277 EBV-BRLF1 EBV 0.89 1264 EBV-BRLF1 215 3062 10 EBV BRLF1 YVLDHLIVV effector memory T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*02:01 B2M MHCI -619 chip0420_776151 7.96 12.13 Chip1 T1D_1 T1D TGTGCAGAGAATTCGGGAGGAGGAAGCCAAGGAAATCTCATCTTT CAENSGGGSQGNLIF TRAV13-2*01 TRAJ42*01 5.0 382.0 TGCAGCGTCGGCTCCAGGGGAACTAATGAAAAACTGTTTTTT CSVGSRGTNEKLFF TRBV29-1*01 TRBJ1-4*01 127.0 6161.0 CAENSGGGSQGNLIF_CSVGSRGTNEKLFF 1 3204 EBV-BLMF1 EBV 0.64 2531 NEG 221 2983 7 EBV BLMF1 GLCTLVAML transitional T cells between effector and memory populations PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*02:01 B2M MHCI -620 chip0420_440009 -0.99 9.74 Chip1 T1D_1 T1D TGTGCTGTGAAAGGAACCGGCACTGCCAGTAAACTCACCTTT CAVKGTGTASKLTF TRAV21*01 TRAJ44*01 31.0 2107.0 TGCAGTGCTCGGTACAGGGGAGGGTCTGGAAACACCATATATTTT CSARYRGGSGNTIYF TRBV20-1*01 TRBJ1-3*01 23.0 822.0 CAVKGTGTASKLTF_CSARYRGGSGNTIYF 1 4907 PGT-178 PGT 0.48 1480 PGT-178 190 4717 3 HomoSapiens PGT LLAGIGTVPI Naive T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*02:01 B2M MHCI -621 chip0420_380113 16.37 11.44 Chip1 T1D_1 T1D TGTGCCAGTAGTACCCGAAGCACAGATACGCAGTATTTT CASSTRSTDTQYF TRBV19*01 TRBJ2-3*01 6.0 349.0 _CASSTRSTDTQYF 1 2168 M1 FLU 1.0 1250 M1 179 1989 12 InfluenzaA M1 GILGFVFTL effector T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*02:01 B2M MHCI -622 chip0420_646886 9.32 7.54 Chip1 T1D_1 T1D TGTGCCAGCAGTTCCGGCGGGAACGTGGATACGCAGTATTTT CASSSGGNVDTQYF TRBV7-3*01 TRBJ2-3*01 58.0 2172.0 _CASSSGGNVDTQYF 47 4729 EBV-BLMF1 EBV 0.55 2531 NEG 205 4524 8 EBV BLMF1 GLCTLVAML effector memory T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*02:01 B2M MHCI -623 chip0420_456954 11.14 7.55 Chip1 T1D_2 T1D TGCGCCAGCAGGATGGGGGCCGGGGATACGCAGTATTTT CASRMGAGDTQYF TRBV10-2*01 TRBJ2-3*01 30.0 1914.0 _CASRMGAGDTQYF 90 2496 EBV-BLMF1 EBV 0.41 2531 NEG 213 2283 10 EBV BLMF1 GLCTLVAML effector memory T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*02:01 B2M MHCI -624 chip0420_472042 9.1 10.49 Chip1 T1D_2 T1D _ 6746 4203 EBV-BLMF1 EBV 0.86 2531 NEG 203 4000 9 EBV BLMF1 GLCTLVAML effector memory T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*02:01 B2M MHCI -625 chip0420_595360 10.72 12.13 Chip1 T1D_1 T1D _ 6746 2100 EBV-BLMF1 EBV 0.4 2531 NEG 194 1906 9 EBV BLMF1 GLCTLVAML effector memory T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*02:01 B2M MHCI -626 chip0420_407076 8.61 10.0 Chip1 T1D_2 T1D TGTGCTGTGAGAGACGACAGAGATGACAAGATCATCTTT CAVRDDRDDKIIF TRAV3*01 TRAJ30*01 39.0 1978.0 CAVRDDRDDKIIF_ 4 3973 EBV-BLMF1 EBV 0.69 2531 NEG 212 3761 8 EBV BLMF1 GLCTLVAML effector memory T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*02:01 B2M MHCI -627 chip0420_314893 14.76 9.0 Chip1 T1D_2 T1D TGCGCCAGCAGACAGGGGGATGGAGATACGCAGTATTTT CASRQGDGDTQYF TRBV10-2*01 TRBJ2-3*01 15.0 552.0 _CASRQGDGDTQYF 3 2386 EBV-BLMF1 EBV 0.67 2531 NEG 216 2170 12 EBV BLMF1 GLCTLVAML effector T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*02:01 B2M MHCI -628 chip0420_674711 8.78 8.64 Chip1 T1D_1 T1D TGTGCCAGCAGCCAAAGCCCGGGTGGTACGCAGTATTTT CASSQSPGGTQYF TRBV14*01 TRBJ2-3*01 6.0 337.0 _CASSQSPGGTQYF 94 3542 EBV-BLMF1 EBV 0.78 2531 NEG 202 3340 8 EBV BLMF1 GLCTLVAML effector memory T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*02:01 B2M MHCI -629 chip0420_505332 12.31 6.74 Chip1 T1D_2 T1D TGCAGCGTGGGGACAGGGGGAACTAATGAAAAACTGTTTTTT CSVGTGGTNEKLFF TRBV29-1*01 TRBJ1-4*01 14.0 422.0 _CSVGTGGTNEKLFF 638 4115 EBV-BLMF1 EBV 0.62 2531 NEG 219 3896 10 EBV BLMF1 GLCTLVAML effector memory T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*02:01 B2M MHCI -630 chip0420_487682 -3.18 13.4 Chip1 T1D_1 T1D _ 6746 4143 HCVNS3-1073-1081 HCV 0.58 36 NEG 188 3955 1 HCV NS3 CINGVCWTV Naive T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*02:01 B2M MHCI -631 chip0420_858625 14.26 8.5 Chip1 T1D_1 T1D TGCGGCCCCGCGGCACCTAGCGACTACAAGCTGAGCTTT CGPAAPSDYKLSF TRAV30*01 TRAJ20*01 34.0 2074.0 TGTGCCAGCAGCACGGGACAGCTATCGAACACCGGGGAGCTGTTTTTT CASSTGQLSNTGELFF TRBV9*01 TRBJ2-2*01 43.0 1991.0 CGPAAPSDYKLSF_CASSTGQLSNTGELFF 1 2921 EBV-BLMF1 EBV 0.65 2531 NEG 214 2707 12 EBV BLMF1 GLCTLVAML effector T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*02:01 B2M MHCI -632 chip0420_815429 15.68 10.54 Chip1 T1D_1 T1D TGTGCCAGCAGTCCGGACCAAACTAGCTCCTACAATGAGCAGTTCTTC CASSPDQTSSYNEQFF TRBV27*01 TRBJ2-1*01 30.0 1309.0 _CASSPDQTSSYNEQFF 47 3175 EBV-BRLF1 EBV 0.8 1264 EBV-BRLF1 201 2974 12 EBV BRLF1 YVLDHLIVV effector T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*02:01 B2M MHCI -633 chip0420_621703 8.8 9.81 Chip1 T1D_2 T1D TGCAGCGTTGGGGGCAGCTTCTATGGCTACACCTTC CSVGGSFYGYTF TRBV29-1*01 TRBJ1-2*01 74.0 6617.0 _CSVGGSFYGYTF 42 3567 EBV-BLMF1 EBV 0.79 2531 NEG 221 3346 8 EBV BLMF1 GLCTLVAML effector memory T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*02:01 B2M MHCI -634 chip0420_196799 14.75 8.56 Chip1 T1D_2 T1D TGTGCCTTAGGAGGACTGACCTTT CALGGLTF TRAV8-1*01 TRAJ22*01 3.0 450.0 TGTGCCAGCAGCCCCTCGACTAGCGGGAGTGGGGAGACCCAGTACTTC CASSPSTSGSGETQYF TRBV3-1*01 TRBJ2-5*01 64.0 3241.0 CALGGLTF_CASSPSTSGSGETQYF 12 1897 EBV-BRLF1 EBV 1.0 1264 NEG 235 1662 12 EBV BRLF1 YVLDHLIVV effector T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*02:01 B2M MHCI -635 chip0420_82377 12.06 7.35 Chip1 T1D_2 T1D TGCAGCGTTGACCAAAGGACAGGGCAAAAGAAGAACTATGGCTACACCTTC CSVDQRTGQKKNYGYTF TRBV29-1*01 TRBJ1-2*01 161.0 6491.0 _CSVDQRTGQKKNYGYTF 40 2851 EBV-BLMF1 EBV 0.82 2531 NEG 233 2618 10 EBV BLMF1 GLCTLVAML effector memory T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*02:01 B2M MHCI -636 chip0420_75422 12.04 12.68 Chip1 T1D_1 T1D TGCAGTGCTAGTGGTGGGACAGGGAACGGCTACACCTTC CSASGGTGNGYTF TRBV20-1*01 TRBJ1-2*01 38.0 1398.0 _CSASGGTGNGYTF 1 1703 EBV-BLMF1 EBV 0.77 2531 NEG 200 1503 11 EBV BLMF1 GLCTLVAML effector T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*02:01 B2M MHCI -637 chip0420_611546 11.68 7.38 Chip1 T1D_2 T1D TGTGCCAGCAGCTCGGGACTAGTCGCCCCCGGGGAGCTGTTTTTT CASSSGLVAPGELFF TRBV2*01 TRBJ2-2*01 46.0 2789.0 _CASSSGLVAPGELFF 133 3341 EBV-BLMF1 EBV 0.89 2531 NEG 186 3155 10 EBV BLMF1 GLCTLVAML effector memory T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*02:01 B2M MHCI -638 chip0420_352352 -1.18 7.29 Chip1 T1D_1 T1D TGTGCCGTGGCTGCAGGCAAATCAACCTTT CAVAAGKSTF TRAV12-2*01 TRAJ27*01 1.0 209.0 TGCAGTGCAATGAACACCGGGGAGCTGTTTTTT CSAMNTGELFF TRBV20-1*01 TRBJ2-2*01 35.0 3110.0 CAVAAGKSTF_CSAMNTGELFF 1 7732 PGT-178 PGT 0.5 1480 PGT-178 185 7547 3 HomoSapiens PGT LLAGIGTVPI Naive T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*02:01 B2M MHCI -639 chip0420_346180 6.09 12.37 Chip1 T1D_1 T1D TGTGCTGTGAGCGGCGGAGGAAGCCAAGGAAATCTCATCTTT CAVSGGGSQGNLIF TRAV3*01 TRAJ42*01 42.0 2096.0 TGTGCCAGTAGTTCACGGAGTCAAGATACGCAGTATTTC CASSSRSQDTQYF TRBV19*01 TRBJ2-3*01 26.0 1236.0 CAVSGGGSQGNLIF_CASSSRSQDTQYF 1 5061 M1 FLU 0.96 1250 M1 197 4864 7 InfluenzaA M1 GILGFVFTL transitional T cells between effector and memory populations PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*02:01 B2M MHCI -640 chip0420_41798 8.41 9.13 Chip1 T1D_1 T1D TGTGCCAGCAGTCCGGACCAAACTAGCTCCTACAATGAGCAGTTCTTC CASSPDQTSSYNEQFF TRBV27*01 TRBJ2-1*01 119.0 6511.0 _CASSPDQTSSYNEQFF 47 5343 EBV-BRLF1 EBV 0.8 1264 EBV-BRLF1 202 5141 8 EBV BRLF1 YVLDHLIVV effector memory T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*02:01 B2M MHCI -641 chip0420_111314 10.54 8.93 Chip1 T1D_1 T1D TGTGCCAGCAGCACGGGACAGCTATCGAACACCGGGGAGCTGTTTTTT CASSTGQLSNTGELFF TRBV9*01 TRBJ2-2*01 26.0 1284.0 _CASSTGQLSNTGELFF 82 4982 EBV-BLMF1 EBV 1.0 2531 EBV-BLMF1 180 4802 10 EBV BLMF1 GLCTLVAML effector memory T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*02:01 B2M MHCI -642 chip0420_682916 12.13 12.06 Chip1 T1D_1 T1D TGTGCCAGCAGCCAAAGCCCGGGTGGTACGCAGTATTTT CASSQSPGGTQYF TRBV14*01 TRBJ2-3*01 1.0 17.0 _CASSQSPGGTQYF 94 2680 EBV-BLMF1 EBV 0.44 2531 NEG 192 2488 11 EBV BLMF1 GLCTLVAML effector T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*02:01 B2M MHCI -643 chip0420_186494 -1.21 7.21 Chip1 T1D_1 T1D TGTGCCAGCAGCTTAGGTCAAGGGGGCGAGCAGTTCTTC CASSLGQGGEQFF TRBV11-3*01 TRBJ2-1*01 10.0 451.0 _CASSLGQGGEQFF 1 6655 PGT-178 PGT 0.84 1480 PGT-178 189 6466 3 HomoSapiens PGT LLAGIGTVPI Naive T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*02:01 B2M MHCI -644 chip0420_379604 10.04 11.13 Chip1 T1D_1 T1D TGTGCAGAGATTCTTATAACACCGCCCAGCTCATCTTT CAEILIa?cTAQLIF TRAV13-2*01 TRAJ34*01 36.0 2121.0 TGTGCCAGCAGTTCGGGACAGGTACTTCCCAATGAGCAGTTCTTC CASSSGQVLPNEQFF TRBV2*01 TRBJ2-1*01 40.0 2599.0 CAEILIa?cTAQLIF_CASSSGQVLPNEQFF 1 6867 EBV-BLMF1 EBV 0.75 2531 NEG 179 6688 9 EBV BLMF1 GLCTLVAML effector memory T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*02:01 B2M MHCI -645 chip0420_187435 11.82 11.13 Chip1 T1D_1 T1D TGCAGCGTCGGCTCCAGGGGAACTAATGAAAAACTGTTTTTT CSVGSRGTNEKLFF TRBV29-1*01 TRBJ1-4*01 95.0 5475.0 _CSVGSRGTNEKLFF 283 2742 EBV-BLMF1 EBV 0.62 2531 NEG 184 2558 9 EBV BLMF1 GLCTLVAML effector memory T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*02:01 B2M MHCI -646 chip0420_621894 11.25 7.55 Chip1 T1D_2 T1D TGTGCAATGAGAGAGGGTCCCCGGTACAATAACAATGACATGCGCTTT CAMREGPRYNNNDMRF TRAV14/DV4*01 TRAJ43*01 17.0 841.0 TGCGCCAGCAGGATGGGGGCCGGGGATACGCAGTATTTT CASRMGAGDTQYF TRBV10-2*01 TRBJ2-3*01 37.0 2322.0 CAMREGPRYNNNDMRF_CASRMGAGDTQYF 1 3669 EBV-BLMF1 EBV 0.86 2531 NEG 218 3451 10 EBV BLMF1 GLCTLVAML effector memory T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*02:01 B2M MHCI -647 chip0420_787556 10.76 7.39 Chip1 T1D_2 T1D TGCAGCGTGGGGACAGGGGGAACTAATGAAAAACTGTTTTTT CSVGTGGTNEKLFF TRBV29-1*01 TRBJ1-4*01 104.0 4377.0 _CSVGTGGTNEKLFF 638 2918 EBV-BLMF1 EBV 0.71 2531 NEG 235 2683 10 EBV BLMF1 GLCTLVAML effector memory T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*02:01 B2M MHCI -648 chip0420_107920 4.98 10.59 Chip1 T1D_2 T1D TGCAGTGCTGTGACAGAGGGAGGTGGCACTGAAGCTTTCTTT CSAVTEGGGTEAFF TRBV20-1*01 TRBJ1-1*01 8.0 318.0 _CSAVTEGGGTEAFF 1 5225 MART1-ALA MART1 0.56 269 NEG 180 5045 6 HomoSapiens MART1 ALAGIGILTV central memory T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*02:01 B2M MHCI -649 chip0420_592582 12.81 6.88 Chip1 T1D_2 T1D TGTGCAGCATACGCAGACAACATGCTCACCTTT CAAYADNMLTF TRAV29/DV5*01 TRAJ39*01 18.0 2384.0 TGCGCCAGCAGGATGGGGGCCGGGGATACGCAGTATTTT CASRMGAGDTQYF TRBV10-2*01 TRBJ2-3*01 20.0 951.0 CAAYADNMLTF_CASRMGAGDTQYF 1 3342 EBV-BLMF1 EBV 0.75 2531 NEG 221 3121 10 EBV BLMF1 GLCTLVAML effector memory T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*02:01 B2M MHCI -650 chip0420_859723 9.14 10.24 Chip1 T1D_2 T1D TGCGCCAGCAGAGCGGGGGCCGGGGATACGCAGTATTTT CASRAGAGDTQYF TRBV10-2*01 TRBJ2-3*01 23.0 1427.0 _CASRAGAGDTQYF 59 3430 EBV-BLMF1 EBV 1.0 2531 NEG 245 3185 8 EBV BLMF1 GLCTLVAML effector memory T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*02:01 B2M MHCI -651 chip0420_104746 9.03 8.74 Chip1 T1D_1 T1D _ 6746 4603 EBV-BRLF1 EBV 0.94 1264 EBV-BRLF1 231 4372 8 EBV BRLF1 YVLDHLIVV effector memory T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*02:01 B2M MHCI -652 chip0420_132128 15.08 10.83 Chip1 T1D_2 T1D TGCAGCGTGGGGACAGGGGGAACTAATGAAAAACTGTTTTTT CSVGTGGTNEKLFF TRBV29-1*01 TRBJ1-4*01 123.0 6649.0 _CSVGTGGTNEKLFF 638 3110 EBV-BLMF1 EBV 0.6 2531 NEG 191 2919 12 EBV BLMF1 GLCTLVAML effector T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*02:01 B2M MHCI -653 chip0420_6559 10.81 10.25 Chip1 T1D_1 T1D TGCAGCGTCGGCTCCAGGGGAACTAATGAAAAACTGTTTTTT CSVGSRGTNEKLFF TRBV29-1*01 TRBJ1-4*01 96.0 4600.0 _CSVGSRGTNEKLFF 283 5274 EBV-BLMF1 EBV 0.8 2531 NEG 203 5071 9 EBV BLMF1 GLCTLVAML effector memory T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*02:01 B2M MHCI -654 chip0420_867296 5.56 12.41 Chip1 T1D_1 T1D TGTGCTCCGGTCGGGGGTGGGGGAAGCCAAGGAAATCTCATCTTT CAPVGGGGSQGNLIF TRAV17*01 TRAJ42*01 22.0 451.0 TGTGCCAGTAGCCCTCGGAGCACAGATACGCAGTATTTT CASSPRSTDTQYF TRBV19*01 TRBJ2-3*01 8.0 312.0 CAPVGGGGSQGNLIF_CASSPRSTDTQYF 1 5369 M1 FLU 0.93 1250 NEG 205 5164 7 InfluenzaA M1 GILGFVFTL transitional T cells between effector and memory populations PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*02:01 B2M MHCI -655 chip0420_547758 7.34 9.59 Chip1 T1D_2 T1D TGTGCAGAGAGTTACGACGGGTATGCACTCAACTTC CAESYDGYALNF TRAV5*01 TRAJ41*01 1.0 176.0 CAESYDGYALNF_ 2 5492 EBV-BLMF1 EBV 1.0 2531 NEG 200 5292 8 EBV BLMF1 GLCTLVAML effector memory T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*02:01 B2M MHCI -656 chip0420_64191 5.94 13.38 Chip1 T1D_2 T1D TGCAGCGTTGTCAGCCCGAACACTGAAGCTTTCTTT CSVVSPNTEAFF TRBV29-1*01 TRBJ1-1*01 24.0 2058.0 _CSVVSPNTEAFF 1 4845 PGT-178 PGT 0.52 1480 PGT-178 176 4669 7 HomoSapiens PGT LLAGIGTVPI transitional T cells between effector and memory populations PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*02:01 B2M MHCI -657 chip0420_835135 14.53 12.02 Chip1 T1D_2 T1D TGTGCAGAGAAGGCCTGGGGGTTACCCGAACGTTACCTTT CAEKAWgg??gtYPNVTF TRAV5*01 TRAJ13*01 36.0 2102.0 TGCAGCGTGGGGACAGGGGGAACTAATGAAAAACTGTTTTTT CSVGTGGTNEKLFF TRBV29-1*01 TRBJ1-4*01 89.0 3686.0 CAEKAWgg??gtYPNVTF_CSVGTGGTNEKLFF 1 2532 EBV-BLMF1 EBV 0.75 2531 NEG 189 2343 12 EBV BLMF1 GLCTLVAML effector T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*02:01 B2M MHCI -658 chip0420_824694 11.77 6.85 Chip1 T1D_2 T1D TGTGCCTGGAGTGACCAACTAGGGGCGGCACGGGAGCTGTTTTTT CAWSDQLGAARELFF TRBV30*01 TRBJ2-2*01 30.0 1215.0 _CAWSDQLGAARELFF 7 3650 EBV-BRLF1 EBV 1.0 1264 EBV-BRLF1 215 3435 10 EBV BRLF1 YVLDHLIVV effector memory T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*02:01 B2M MHCI -659 chip0420_575704 12.44 7.08 Chip1 T1D_2 T1D TGCAGCGTGGGGACAGGGGGAACTAATGAAAAACTGTTTTTT CSVGTGGTNEKLFF TRBV29-1*01 TRBJ1-4*01 151.0 6026.0 _CSVGTGGTNEKLFF 638 3143 EBV-BLMF1 EBV 0.69 2531 NEG 208 2935 10 EBV BLMF1 GLCTLVAML effector memory T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*02:01 B2M MHCI -660 chip0420_502235 13.95 7.22 Chip1 T1D_1 T1D TGTGTGGTGAACGGACGGGATAGCAGCTATAAATTGATCTTC CVVNGRDSSYKLIF TRAV12-1*01 TRAJ12*01 29.0 1477.0 TGTGCCAGCAGTGCCGGTCGGGTCCACCCGGGGACCCAGTACTTC CASSAGRVHPGTQYF TRBV2*01 TRBJ2-5*01 38.0 1786.0 CVVNGRDSSYKLIF_CASSAGRVHPGTQYF 1 2912 EBV-BLMF1 EBV 0.8 2531 NEG 187 2725 10 EBV BLMF1 GLCTLVAML effector memory T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*02:01 B2M MHCI -661 chip0420_479478 16.14 10.01 Chip1 T1D_2 T1D TGCAGCGTGGGGACACCTCCAACTAATGAAAAACTGTTTTTT CSVGTPPTNEKLFF TRBV29-1*01 TRBJ1-4*01 122.0 5959.0 _CSVGTPPTNEKLFF 23 3826 EBV-BLMF1 EBV 0.54 2531 NEG 193 3633 12 EBV BLMF1 GLCTLVAML effector T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*02:01 B2M MHCI -662 chip0420_112302 9.17 9.71 Chip1 T1D_1 T1D _ 6746 5772 EBV-BRLF1 EBV 1.0 1264 EBV-BRLF1 224 5548 8 EBV BRLF1 YVLDHLIVV effector memory T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*02:01 B2M MHCI -663 chip0420_411619 15.44 9.6 Chip1 T1D_2 T1D TGTGCCTGGAGTGACCAACTAGGGGCGGCACGGGAGCTGTTTTTT CAWSDQLGAARELFF TRBV30*01 TRBJ2-2*01 85.0 3939.0 _CAWSDQLGAARELFF 7 2912 EBV-BRLF1 EBV 0.94 1264 EBV-BRLF1 208 2704 12 EBV BRLF1 YVLDHLIVV effector T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*02:01 B2M MHCI -664 chip0420_406916 12.08 10.52 Chip1 T1D_1 T1D TGTGCTGTGAGTGATTTGGGAATGCCATGCGCTTT CAVSDtt?GNAMRF TRAV8-4*01 TRAJ43*01 28.0 2125.0 TGCAGCGTCGGCTCCAGGGGAACTAATGAAAAACTGTTTTTT CSVGSRGTNEKLFF TRBV29-1*01 TRBJ1-4*01 21.0 903.0 CAVSDtt?GNAMRF_CSVGSRGTNEKLFF 1 3607 EBV-BLMF1 EBV 0.83 2531 NEG 197 3410 9 EBV BLMF1 GLCTLVAML effector memory T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*02:01 B2M MHCI -665 chip0420_845544 15.3 12.07 Chip1 T1D_2 T1D TGTGCTTCCCTAACCCCGGGGGCTTCCAAGATAATCTTT CASLTPGASKIIF TRAV8-6*01 TRAJ3*01 27.0 2091.0 TGTGCCAGCAGCTCGGGACTAGTCGCCCCCGGGGAGCTGTTTTTT CASSSGLVAPGELFF TRBV2*01 TRBJ2-2*01 50.0 3210.0 CASLTPGASKIIF_CASSSGLVAPGELFF 38 2121 EBV-BLMF1 EBV 0.47 2531 NEG 200 1921 12 EBV BLMF1 GLCTLVAML effector T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*02:01 B2M MHCI -666 chip0420_432367 10.17 10.26 Chip1 T1D_2 T1D TGTGCCTTCGGCGGACTGACCTTT CAFGGLTF TRAV8-1*01 TRAJ22*01 23.0 2417.0 CAFGGLTF_ 2 3065 EBV-BRLF1 EBV 0.88 1264 EBV-BRLF1 199 2866 9 EBV BRLF1 YVLDHLIVV effector memory T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*02:01 B2M MHCI -667 chip0420_773915 13.22 10.72 Chip1 T1D_1 T1D TGCAGCGTCGGCTCCAGGGGAACTAATGAAAAACTGTTTTTT CSVGSRGTNEKLFF TRBV29-1*01 TRBJ1-4*01 126.0 6739.0 _CSVGSRGTNEKLFF 283 3191 EBV-BLMF1 EBV 0.8 2531 NEG 176 3015 9 EBV BLMF1 GLCTLVAML effector memory T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*02:01 B2M MHCI -668 chip0420_791163 13.29 7.37 Chip1 T1D_2 T1D TGCGCCAGCAGGATGGGGGCCGGGGATACGCAGTATTTT CASRMGAGDTQYF TRBV10-2*01 TRBJ2-3*01 28.0 1766.0 _CASRMGAGDTQYF 90 2697 EBV-BLMF1 EBV 0.77 2531 NEG 197 2500 10 EBV BLMF1 GLCTLVAML effector memory T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*02:01 B2M MHCI -669 chip0420_573605 8.06 10.63 Chip1 T1D_2 T1D TGTGCCTGGAGTGTACAGCTAGCGGGAGTAGACGAGCAGTACTTC CAWSVQLAGVDEQYF TRBV30*01 TRBJ2-7*01 25.0 739.0 _CAWSVQLAGVDEQYF 11 4542 EBV-BRLF1 EBV 1.0 1264 NEG 224 4318 8 EBV BRLF1 YVLDHLIVV effector memory T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*02:01 B2M MHCI -670 chip0420_882804 16.01 11.65 Chip1 T1D_2 T1D TGCAGCGTGGGGACAGGGGGAACTAATGAAAAACTGTTTTTT CSVGTGGTNEKLFF TRBV29-1*01 TRBJ1-4*01 31.0 1504.0 _CSVGTGGTNEKLFF 638 1723 EBV-BLMF1 EBV 0.5 2531 NEG 190 1533 12 EBV BLMF1 GLCTLVAML effector T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*02:01 B2M MHCI -671 chip0420_868762 11.6 10.49 Chip1 T1D_1 T1D TGCAGCGTCGGCTCCAGGGGAACTAATGAAAAACTGTTTTTT CSVGSRGTNEKLFF TRBV29-1*01 TRBJ1-4*01 288.0 12985.0 _CSVGSRGTNEKLFF 283 3529 EBV-BLMF1 EBV 0.6 2531 NEG 188 3341 9 EBV BLMF1 GLCTLVAML effector memory T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*02:01 B2M MHCI -672 chip0420_198483 11.2 6.53 Chip1 T1D_2 T1D TGCAGCGTGGGGACAGGGGGAACTAATGAAAAACTGTTTTTT CSVGTGGTNEKLFF TRBV29-1*01 TRBJ1-4*01 203.0 8197.0 _CSVGTGGTNEKLFF 638 4128 EBV-BLMF1 EBV 0.6 2531 NEG 202 3926 10 EBV BLMF1 GLCTLVAML effector memory T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*02:01 B2M MHCI -673 chip0420_647386 14.18 9.38 Chip1 T1D_1 T1D TGTCCTGTGAGTCCTTTGGGAATGCCCTGCGCTTT CPVSPtt?GNALRF TRAV8-4*01 TRAJ43*01 2.0 183.0 CPVSPtt?GNALRF_ 1 3859 EBV-BLMF1 EBV 0.7 2531 NEG 193 3666 12 EBV BLMF1 GLCTLVAML effector T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*02:01 B2M MHCI -674 chip0420_447780 6.62 9.93 Chip1 T1D_1 T1D _ 6746 5939 EBV-LMP2-FLY EBV 0.68 355 EBV-LMP2-FLY 185 5754 6 EBV LMP2 FLYALALLL central memory T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*02:01 B2M MHCI -675 chip0420_600386 11.03 7.26 Chip1 T1D_2 T1D TGTGTGGTGAACGGCAGGGATTGCCGCTGTAAATTGGTCTTT CVVNGRDCRCKLVF TRAV12-1*01 TRAJ12*01 5.0 177.0 TGTGCCAGCAGCTCGGGACTAGTCGCCCCCGGGGAGCTGTTTTTT CASSSGLVAPGELFF TRBV2*01 TRBJ2-2*01 114.0 7475.0 CVVNGRDCRCKLVF_CASSSGLVAPGELFF 1 3249 EBV-BLMF1 EBV 1.0 2531 NEG 188 3061 10 EBV BLMF1 GLCTLVAML effector memory T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*02:01 B2M MHCI -676 chip0420_849362 10.83 10.15 Chip1 T1D_2 T1D TGTGTGGTGAACGGCAGGGATAGCAGCTATAAATTGATCTTC CVVNGRDSSYKLIF TRAV12-1*01 TRAJ12*01 6.0 465.0 TGTGCCAGCAGCTCGGGACTAGTCGCCCCCGGGGAGCTGTTTTTT CASSSGLVAPGELFF TRBV2*01 TRBJ2-2*01 35.0 2180.0 CVVNGRDSSYKLIF_CASSSGLVAPGELFF 98 3970 EBV-BLMF1 EBV 1.0 2531 NEG 195 3775 9 EBV BLMF1 GLCTLVAML effector memory T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*02:01 B2M MHCI -677 chip0420_451059 13.37 9.57 Chip1 T1D_2 T1D TGTGCCAGCAGCTCGGGACTAGTCGCCCCCGGGGAGCTGTTTTTT CASSSGLVAPGELFF TRBV2*01 TRBJ2-2*01 129.0 7573.0 _CASSSGLVAPGELFF 133 3131 EBV-BLMF1 EBV 0.6 2531 NEG 204 2927 10 EBV BLMF1 GLCTLVAML effector memory T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*02:01 B2M MHCI -678 chip0420_331890 8.53 9.83 Chip1 T1D_2 T1D TGTGCAGATCTCCGGGGTGGCCGGCTTATCTTC CADLRGGRLIF TRAV5*01 TRAJ23*01 1.0 35.0 TGCAGCGTTGGAGACACATTCTATGGCTACACCTTC CSVGDTFYGYTF TRBV29-1*01 TRBJ1-2*01 15.0 1352.0 CADLRGGRLIF_CSVGDTFYGYTF 1 5214 EBV-BLMF1 EBV 0.63 2531 EBV-BLMF1 203 5011 8 EBV BLMF1 GLCTLVAML effector memory T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*02:01 B2M MHCI -679 chip0420_511764 15.78 9.92 Chip1 T1D_2 T1D _ 6746 2397 EBV-BRLF1 EBV 0.71 1264 NEG 195 2202 12 EBV BRLF1 YVLDHLIVV effector T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*02:01 B2M MHCI -680 chip0420_103932 8.95 7.91 Chip1 T1D_2 T1D _ 6746 7341 EBV-LMP2A EBV 1.0 700 NEG 210 7131 8 EBV LMP2A CLGGLLTMV effector memory T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*02:01 B2M MHCI -681 chip0420_622859 13.62 7.68 Chip1 T1D_1 T1D TGTGCAGCGCCTCTCCTCCCCCCGCCCCGCTCCTCTTT CAAPLLc?cPAPLLF TRAV13-2*01 TRAJ34*01 16.0 276.0 TGTGCCAGCAGTTCGGGACAGGTACTTCCCAATGAGCAGTTCTTC CASSSGQVLPNEQFF TRBV2*01 TRBJ2-1*01 64.0 4393.0 CAAPLLc?cPAPLLF_CASSSGQVLPNEQFF 1 3111 EBV-BLMF1 EBV 0.5 2531 NEG 202 2909 10 EBV BLMF1 GLCTLVAML effector memory T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*02:01 B2M MHCI -682 chip0420_153602 12.44 7.55 Chip1 T1D_2 T1D TGTGCCAGCAGCCCCTCGACTAGCGGGAGTGGGGAGACCCAGTACTTC CASSPSTSGSGETQYF TRBV3-1*01 TRBJ2-5*01 12.0 737.0 _CASSPSTSGSGETQYF 18 2691 EBV-BRLF1 EBV 1.0 1264 EBV-BRLF1 207 2484 10 EBV BRLF1 YVLDHLIVV effector memory T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*02:01 B2M MHCI -683 chip0420_540345 13.34 8.16 Chip1 T1D_2 T1D TGCGCCAGCAGAGCGGGAGCCGGGGATACGCAGTATTTT CASRAGAGDTQYF TRBV10-2*01 TRBJ2-3*01 56.0 3130.0 _CASRAGAGDTQYF 59 2419 EBV-BLMF1 EBV 0.75 2531 NEG 203 2216 10 EBV BLMF1 GLCTLVAML effector memory T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*02:01 B2M MHCI -684 chip0420_269695 11.14 8.29 Chip1 T1D_2 T1D TGCGCCAGCAGAGCGGGAGCCGGGGATACGCAGTATTTT CASRAGAGDTQYF TRBV10-2*01 TRBJ2-3*01 14.0 918.0 _CASRAGAGDTQYF 59 3384 EBV-BLMF1 EBV 0.74 2531 EBV-BLMF1 206 3178 10 EBV BLMF1 GLCTLVAML effector memory T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*02:01 B2M MHCI -685 chip0420_160312 13.83 7.92 Chip1 T1D_2 T1D TGTGCCTTAGGAGGACTGACCTTT CALGGLTF TRAV8-1*01 TRAJ22*01 2.0 66.0 CALGGLTF_ 6 1944 EBV-BRLF1 EBV 0.96 1264 EBV-BRLF1 204 1740 10 EBV BRLF1 YVLDHLIVV effector memory T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*02:01 B2M MHCI -686 chip0420_536346 8.23 7.95 Chip1 T1D_1 T1D TGTGCCAGCAGTTCGAGACAGGTACTTCCCAATGAGCAGTTCTTC CASSSRQVLPNEQFF TRBV2*01 TRBJ2-1*01 8.0 429.0 _CASSSRQVLPNEQFF 1 9019 PGT-178 PGT 0.42 1480 NEG 195 8824 8 HomoSapiens PGT LLAGIGTVPI effector memory T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*02:01 B2M MHCI -687 chip0420_211207 12.05 7.9 Chip1 T1D_2 T1D _ 6746 2389 EBV-BRLF1 EBV 0.98 1264 EBV-BRLF1 219 2170 10 EBV BRLF1 YVLDHLIVV effector memory T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*02:01 B2M MHCI -688 chip0420_837792 11.25 12.52 Chip1 T1D_2 T1D TGTGCCTGGAGTGACCAACTAGGGGCGGCACGGGAGCTGTTTTTT CAWSDQLGAARELFF TRBV30*01 TRBJ2-2*01 31.0 1400.0 _CAWSDQLGAARELFF 7 1870 EBV-BRLF1 EBV 1.0 1264 NEG 196 1674 11 EBV BRLF1 YVLDHLIVV effector T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*02:01 B2M MHCI -689 chip0420_688775 5.5 8.88 Chip1 T1D_1 T1D TGTGCCAGCAGCCCGGGGGACGCCCGTGGCGAGCAGTACTTC CASSPGDARGEQYF TRBV5-6*01 TRBJ2-7*01 57.0 3926.0 _CASSPGDARGEQYF 12 6290 EBV-LMP1-1 EBV 0.96 237 EBV-LMP1-1 185 6105 6 EBV LMP1 YLLEMLWRL central memory T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*02:01 B2M MHCI -690 chip0420_753653 14.67 8.37 Chip1 T1D_1 T1D TGTGCTGTGCGTGCTACCGGCCCGAGCCTCCAAATACATCTTT CAVRATG??cRASKYIF TRAV8-6*01 TRAJ40*01 23.0 1284.0 TGTGCCAGCAGTCCGGACCAAACTAGCTCCTACAATGAGCAGTTCTTC CASSPDQTSSYNEQFF TRBV27*01 TRBJ2-1*01 10.0 542.0 CAVRATG??cRASKYIF_CASSPDQTSSYNEQFF 1 2650 EBV-BRLF1 EBV 0.86 1264 EBV-BRLF1 198 2452 12 EBV BRLF1 YVLDHLIVV effector T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*02:01 B2M MHCI -691 chip0420_109333 9.6 9.67 Chip1 T1D_2 T1D TGCGCCAGCAGAATGGGGGCCGGGGATACGCAGTATTTT CASRMGAGDTQYF TRBV10-2*01 TRBJ2-3*01 23.0 1476.0 _CASRMGAGDTQYF 90 4576 EBV-BLMF1 EBV 0.8 2531 NEG 189 4387 9 EBV BLMF1 GLCTLVAML effector memory T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*02:01 B2M MHCI -692 chip0420_167540 9.31 8.39 Chip1 T1D_2 T1D TGTGCAGGGCAATCGGGTGGTACTAGCTATGGAAAGCTGACATTT CAGQSGGTSYGKLTF TRAV25*01 TRAJ52*01 1.0 10.0 TGTGCCAGCAGCTCGGGACTAGTCGCCCCCGGGGAGCTGTTTTTT CASSSGLVAPGELFF TRBV2*01 TRBJ2-2*01 16.0 1034.0 CAGQSGGTSYGKLTF_CASSSGLVAPGELFF 1 6236 EBV-BLMF1 EBV 0.47 2531 NEG 188 6048 8 EBV BLMF1 GLCTLVAML effector memory T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*02:01 B2M MHCI -693 chip0420_840890 9.74 11.11 Chip1 T1D_2 T1D TGTGCAGAGAAGGCCTGGGGGTTACCAGACAGTTACCTTT CAEKAWgg??gtYQTVTF TRAV5*01 TRAJ13*01 39.0 2368.0 TGCAGCGTGGGGACAGGGGGAACTAATGAAAAACTGTTTTTT CSVGTGGTNEKLFF TRBV29-1*01 TRBJ1-4*01 36.0 2038.0 CAEKAWgg??gtYQTVTF_CSVGTGGTNEKLFF 2 3295 EBV-BLMF1 EBV 1.0 2531 NEG 191 3104 9 EBV BLMF1 GLCTLVAML effector memory T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*02:01 B2M MHCI -694 chip0420_287340 10.16 9.91 Chip1 T1D_2 T1D TGCAGCTCGCAGGAGGGCGGCTATGGCTACACCTTC CSSQEGGYGYTF TRBV29-1*01 TRBJ1-2*01 31.0 2486.0 _CSSQEGGYGYTF 11 2829 EBV-BLMF1 EBV 0.53 2531 NEG 192 2637 9 EBV BLMF1 GLCTLVAML effector memory T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*02:01 B2M MHCI -695 chip0420_623863 11.55 6.61 Chip1 T1D_2 T1D TGCGCCAGCAGGATGGGGGCCGGGGATACGCAGTATTTT CASRMGAGDTQYF TRBV10-2*01 TRBJ2-3*01 16.0 802.0 _CASRMGAGDTQYF 90 3524 EBV-BLMF1 EBV 0.86 2531 NEG 237 3287 10 EBV BLMF1 GLCTLVAML effector memory T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*02:01 B2M MHCI -696 chip0420_306104 6.26 12.54 Chip1 T1D_1 T1D _ 6746 6794 M1 FLU 0.87 1250 M1 193 6601 7 InfluenzaA M1 GILGFVFTL transitional T cells between effector and memory populations PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*02:01 B2M MHCI -697 chip0420_818630 12.74 6.63 Chip1 T1D_2 T1D _ 6746 3542 EBV-BLMF1 EBV 0.6 2531 NEG 198 3344 10 EBV BLMF1 GLCTLVAML effector memory T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*02:01 B2M MHCI -698 chip0420_363895 14.5 8.92 Chip1 healthy_2 healthy TGTGTAGCAATTTTCTGAGTGGAGGTAGCAACTATAAACTGACATTT CVAIF*Vga?GSNYKLTF TRAV29/DV5*01 TRAJ53*01 8.0 654.0 TGTGCTAGTGGTTCAACGGGGCCCGGCGATTCACCCCTCCACTTT CASGSTGPGDSPLHF TRBV12-5*01 TRBJ1-6*01 9.0 591.0 CVAIF*Vga?GSNYKLTF_CASGSTGPGDSPLHF 1 2695 BZLF1-190-197 EBV 0.88 2156 NEG 198 2497 12 EBV BZLF1 RAKFKQLL effector T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-B*08:01 B2M MHCI -699 chip0420_239756 10.06 9.5 Chip1 T1D_1 T1D TGTGCCAGCAGCCAAAGCCCGGGTGGTACGCAGTATTTT CASSQSPGGTQYF TRBV14*01 TRBJ2-3*01 9.0 343.0 _CASSQSPGGTQYF 94 3956 EBV-BLMF1 EBV 0.89 2531 NEG 203 3753 8 EBV BLMF1 GLCTLVAML effector memory T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*02:01 B2M MHCI -700 chip0420_481588 13.28 7.32 Chip1 T1D_2 T1D TGTGCAGAGAGTACTTCGGGAGGAACGCTTATCTTC CAESTSGGTLIF TRAV5*01 TRAJ23*01 34.0 2131.0 TGCAGCGTGGGGACAGGGGGAACTAATGAAAAACTGTTTTTT CSVGTGGTNEKLFF TRBV29-1*01 TRBJ1-4*01 21.0 746.0 CAESTSGGTLIF_CSVGTGGTNEKLFF 4 3820 EBV-BLMF1 EBV 0.71 2531 NEG 196 3624 10 EBV BLMF1 GLCTLVAML effector memory T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*02:01 B2M MHCI -701 chip0420_605603 10.17 6.73 Chip1 T1D_2 T1D _ 6746 5396 EBV-BRLF1 EBV 0.97 1264 EBV-BRLF1 204 5192 10 EBV BRLF1 YVLDHLIVV effector memory T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*02:01 B2M MHCI -702 chip0420_236732 10.9 10.66 Chip1 T1D_1 T1D TGTGTGGTGAGCGCGGAAATTATGGTGGTGCTACAAACAAGCTCCTCTTT CVVSAEIMg?tGATNKLLF TRAV10*01 TRAJ32*01 89.0 2060.0 CVVSAEIMg?tGATNKLLF_ 1 4634 EBV-BRLF1 EBV 0.71 1264 NEG 195 4439 9 EBV BRLF1 YVLDHLIVV effector memory T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*02:01 B2M MHCI -703 chip0420_465183 14.0 7.34 Chip1 T1D_1 T1D TGCGGCACAGAGGAACCTAACGACTACAAGCTCAGCTTT CGTEEPNDYKLSF TRAV30*01 TRAJ20*01 116.0 5841.0 CGTEEPNDYKLSF_ 22 3285 EBV-BLMF1 EBV 0.9 2531 NEG 206 3079 10 EBV BLMF1 GLCTLVAML effector memory T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*02:01 B2M MHCI -704 chip0420_542338 -0.89 10.46 Chip1 T1D_1 T1D TGTGCAATGAGCTTTAGTAACTTTGGAAATGAGAAATTAACCTTT CAMSFSNFGNEKLTF TRAV12-3*01 TRAJ48*01 8.0 401.0 TGTGCCAGCAGCTTAAAGGGGGACAGGGTGACAGATACGCAGTATTTT CASSLKGDRVTDTQYF TRBV7-3*01 TRBJ2-3*01 32.0 1303.0 CAMSFSNFGNEKLTF_CASSLKGDRVTDTQYF 1 4705 PGT-178 PGT 0.61 1480 PGT-178 155 4550 3 HomoSapiens PGT LLAGIGTVPI Naive T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*02:01 B2M MHCI -705 chip0420_859010 6.05 13.16 Chip1 T1D_1 T1D TGTGCTGGAGCGGGGGGGGGGCGCCAAGGAAATCTCATCTTT CAGAGGGRQGNLIF TRAV27*01 TRAJ42*01 126.0 3952.0 CAGAGGGRQGNLIF_ 1 4615 M1 FLU 0.64 1250 M1 200 4415 7 InfluenzaA M1 GILGFVFTL transitional T cells between effector and memory populations PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*02:01 B2M MHCI -706 chip0420_846368 11.79 7.04 Chip1 T1D_2 T1D TGCGCCAGCAGGATGGGGGCCGGGGATACGCAGTATTTT CASRMGAGDTQYF TRBV10-2*01 TRBJ2-3*01 36.0 2665.0 _CASRMGAGDTQYF 90 4815 EBV-BLMF1 EBV 0.75 2531 NEG 224 4591 10 EBV BLMF1 GLCTLVAML effector memory T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*02:01 B2M MHCI -707 chip0420_597694 11.05 10.21 Chip1 T1D_1 T1D _ 6746 3203 EBV-BLMF1 EBV 0.88 2531 EBV-BLMF1 191 3012 9 EBV BLMF1 GLCTLVAML effector memory T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*02:01 B2M MHCI -708 chip0420_785866 11.63 7.52 Chip1 T1D_2 T1D _ 6746 4716 EBV-BRLF1 EBV 0.99 1264 EBV-BRLF1 217 4499 10 EBV BRLF1 YVLDHLIVV effector memory T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*02:01 B2M MHCI -709 chip0420_698961 13.8 7.3 Chip1 T1D_2 T1D TGCAGCGTGGGGACAGGGGGAACTAATGAAAAACTGTTTTTT CSVGTGGTNEKLFF TRBV29-1*01 TRBJ1-4*01 201.0 9781.0 _CSVGTGGTNEKLFF 638 3391 EBV-BLMF1 EBV 0.42 2531 NEG 185 3206 10 EBV BLMF1 GLCTLVAML effector memory T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*02:01 B2M MHCI -710 chip0420_558675 8.99 9.66 Chip1 T1D_1 T1D _ 6746 4348 EBV-BLMF1 EBV 0.93 2531 EBV-BLMF1 218 4130 8 EBV BLMF1 GLCTLVAML effector memory T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*02:01 B2M MHCI -711 chip0420_216098 12.91 6.32 Chip1 T1D_1 T1D TGTGCCAGCAGTCCGGACCAAACTAGCTCCTACAATGAGCAGTTCTTC CASSPDQTSSYNEQFF TRBV27*01 TRBJ2-1*01 22.0 1152.0 _CASSPDQTSSYNEQFF 47 4835 EBV-BRLF1 EBV 0.95 1264 EBV-BRLF1 207 4628 10 EBV BRLF1 YVLDHLIVV effector memory T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*02:01 B2M MHCI -712 chip0420_172908 12.07 7.27 Chip1 T1D_2 T1D TGCAGCGTGGGGACAGGGGGAACTAATGAAAAACTGTTTTTT CSVGTGGTNEKLFF TRBV29-1*01 TRBJ1-4*01 68.0 3178.0 _CSVGTGGTNEKLFF 638 3194 EBV-BLMF1 EBV 0.5 2531 NEG 205 2989 10 EBV BLMF1 GLCTLVAML effector memory T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*02:01 B2M MHCI -713 chip0420_26652 11.44 7.73 Chip1 T1D_1 T1D TGTGCCAGCCTCGCGGCCCTCCCCTCCGCGCAGTCCTTC CASLAALPSAQSF TRBV6-1*01 TRBJ2-7*01 4.0 27.0 _CASLAALPSAQSF 1 3443 EBV-BRLF1 EBV 0.81 1264 EBV-BRLF1 200 3243 10 EBV BRLF1 YVLDHLIVV effector memory T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*02:01 B2M MHCI -714 chip0420_11199 11.03 6.42 Chip1 T1D_1 T1D TGTGCTGTGGTCTCAAATTCCGGGTATGCACTCAACTTC CAVVSNSGYALNF TRAV12-2*01 TRAJ41*01 32.0 2133.0 TGTGCCAGCAGTTCCGGAGGGAACGTGGATACGCAGTATTTT CASSSGGNVDTQYF TRBV7-3*01 TRBJ2-3*01 48.0 2579.0 CAVVSNSGYALNF_CASSSGGNVDTQYF 8 4628 EBV-BLMF1 EBV 1.0 2531 NEG 194 4434 10 EBV BLMF1 GLCTLVAML effector memory T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*02:01 B2M MHCI -715 chip0420_374965 11.92 10.78 Chip1 T1D_2 T1D TGCAGCGTGGGGACAGGGGGAACTAATGAAAAACTGTTTTTT CSVGTGGTNEKLFF TRBV29-1*01 TRBJ1-4*01 2.0 109.0 _CSVGTGGTNEKLFF 638 3363 EBV-BLMF1 EBV 0.55 2531 NEG 196 3167 9 EBV BLMF1 GLCTLVAML effector memory T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*02:01 B2M MHCI -716 chip0420_503780 6.15 12.89 Chip1 T1D_1 T1D TGTGCTACGGACGGGTATGCAGGCAACATGCTCACCTTT CATDGYAGNMLTF TRAV17*01 TRAJ39*01 39.0 2139.0 TGTGCCAGCAGCCTTCAGTCGTCCACTGAAGCTTTCTTT CASSLQSSTEAFF TRBV25-1*01 TRBJ1-1*01 43.0 2043.0 CATDGYAGNMLTF_CASSLQSSTEAFF 1 4590 M1 FLU 0.86 1250 M1 178 4412 7 InfluenzaA M1 GILGFVFTL transitional T cells between effector and memory populations PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*02:01 B2M MHCI -717 chip0420_734552 -3.18 9.28 Chip1 T1D_1 T1D TGCAGTGCTAGAGGTCAGGCCCCTGAAGCTTTCTTT CSARGQAPEAFF TRBV20-1*01 TRBJ1-1*01 50.0 3879.0 _CSARGQAPEAFF 1 5293 ZNT8-245-254 ZNT8 0.97 2 ZNT8-245-254 185 5108 2 HomoSapiens ZNT8 KIADPICTFI Naive T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*02:01 B2M MHCI -718 chip0420_781147 5.6 11.89 Chip1 T1D_2 T1D _ 6746 4154 IGRP-265-273 IGRP 0.96 34 IGRP-265-273 178 3976 7 HomoSapiens IGRP VLFGLGFAI transitional T cells between effector and memory populations PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*02:01 B2M MHCI -719 chip0420_564581 11.78 7.28 Chip1 T1D_2 T1D _ 6746 2446 EBV-BLMF1 EBV 0.89 2531 NEG 207 2239 10 EBV BLMF1 GLCTLVAML effector memory T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*02:01 B2M MHCI -720 chip0420_112272 9.47 9.76 Chip1 T1D_1 T1D TGTGCCGTGGACCCATGGGGTAACCAGTTCTATTTT CAVDPWGNQFYF TRAV39*01 TRAJ49*01 1.0 349.0 TGTGCCACCCAACAGGGGAGGGACAGTCAGCCCCAGCATTTT CATQQGRDSQPQHF TRBV28*01 TRBJ1-5*01 22.0 1005.0 CAVDPWGNQFYF_CATQQGRDSQPQHF 16 3763 EBV-BLMF1 EBV 1.0 2531 NEG 180 3583 8 EBV BLMF1 GLCTLVAML effector memory T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*02:01 B2M MHCI -721 chip0420_884323 8.99 9.44 Chip1 T1D_1 T1D _ 6746 4277 EBV-BLMF1 EBV 0.74 2531 EBV-BLMF1 215 4062 8 EBV BLMF1 GLCTLVAML effector memory T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*02:01 B2M MHCI -722 chip0420_128645 5.39 9.24 Chip1 T1D_1 T1D TGTGCCCTTGGAGGAGGAGGTGCTGACGGACTCACCTTT CALGGGGADGLTF TRAV19*01 TRAJ45*01 5.0 761.0 TGTGCCAGCAGTGATGACAGGGGAAACACCATATATTTT CASSDDRGNTIYF TRBV2*01 TRBJ1-3*01 25.0 1800.0 CALGGGGADGLTF_CASSDDRGNTIYF 1 3756 EBV-LMP1-1 EBV 0.9 237 NEG 195 3561 6 EBV LMP1 YLLEMLWRL central memory T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*02:01 B2M MHCI -723 chip0420_759450 14.11 11.12 Chip1 T1D_1 T1D TGTGCCAGTAGTGTCGGGGCAGGGGAGACCCAGTACTTC CASSVGAGETQYF TRBV19*01 TRBJ2-5*01 2.0 57.0 _CASSVGAGETQYF 1 2306 EBV-BLMF1 EBV 0.67 2531 NEG 177 2129 12 EBV BLMF1 GLCTLVAML effector T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*02:01 B2M MHCI -724 chip0420_716633 9.15 8.28 Chip1 T1D_1 T1D _ 6746 5062 EBV-BLMF1 EBV 0.84 2531 EBV-BLMF1 185 4877 8 EBV BLMF1 GLCTLVAML effector memory T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*02:01 B2M MHCI -725 chip0420_802865 10.64 11.01 Chip1 T1D_1 T1D TGTGCTGTGGTCTCACATTGCGGGGATGCACTCAACTTC CAVVSHCGDALNF TRAV21*01 TRAJ41*01 11.0 581.0 TGTGCCAGCAGTTCCGGAGGGAACGTGGATACGCAGTATTTT CASSSGGNVDTQYF TRBV7-3*01 TRBJ2-3*01 3.0 78.0 CAVVSHCGDALNF_CASSSGGNVDTQYF 1 3355 EBV-BLMF1 EBV 0.79 2531 NEG 182 3173 9 EBV BLMF1 GLCTLVAML effector memory T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*02:01 B2M MHCI -726 chip0420_6583 -0.44 8.86 Chip1 T1D_1 T1D TGTGCCGTCCCTAACTTTGGAAATGAGAAATTAACCTTT CAVPNFGNEKLTF TRAV12-2*01 TRAJ48*01 46.0 2502.0 TGTGCCAGCAGTTTAGGCCCCGGTCAGCCCCAGCATTTT CASSLGPGQPQHF TRBV27*01 TRBJ1-5*01 14.0 759.0 CAVPNFGNEKLTF_CASSLGPGQPQHF 1 7520 MART1-ALA MART1 0.65 269 MART1-ALA 200 7320 4 HomoSapiens MART1 ALAGIGILTV Naive T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*02:01 B2M MHCI -727 chip0420_407407 6.9 12.66 Chip1 T1D_2 T1D TGTGCCGTGAATACTGGAGGCTTCAAAACTATCTTT CAVNTGGFKTIF TRAV12-2*01 TRAJ9*01 86.0 5202.0 CAVNTGGFKTIF_ 3 3675 MART1-ALA MART1 0.62 269 NEG 177 3498 7 HomoSapiens MART1 ALAGIGILTV transitional T cells between effector and memory populations PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*02:01 B2M MHCI -728 chip0420_347538 8.77 9.83 Chip1 T1D_1 T1D _ 6746 5495 EBV-BLMF1 EBV 0.85 2531 NEG 176 5319 8 EBV BLMF1 GLCTLVAML effector memory T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*02:01 B2M MHCI -729 chip0420_342603 10.47 9.0 Chip1 T1D_1 T1D TGTGCCAGCAGTGACGGTCGGGTCCACCCGGGGACCCAGTACTTC CASSDGRVHPGTQYF TRBV2*01 TRBJ2-5*01 2.0 49.0 _CASSDGRVHPGTQYF 24 4100 EBV-BLMF1 EBV 0.64 2531 NEG 168 3932 10 EBV BLMF1 GLCTLVAML effector memory T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*02:01 B2M MHCI -730 chip0420_198022 8.64 10.03 Chip1 T1D_2 T1D TGCAGCGTTGGAGGCACATTCTATGGCTACACCTTC CSVGGTFYGYTF TRBV29-1*01 TRBJ1-2*01 81.0 6552.0 _CSVGGTFYGYTF 12 3291 EBV-BLMF1 EBV 0.86 2531 EBV-BLMF1 195 3096 8 EBV BLMF1 GLCTLVAML effector memory T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*02:01 B2M MHCI -731 chip0420_460460 12.56 6.83 Chip1 T1D_1 T1D TGTGCAGAGAGTACAAGTGGGGGAAAGCTTATCTTC CAESTSGGKLIF TRAV5*01 TRAJ23*01 20.0 1844.0 TGCAGCGTCGGCTCCAGGGGAACTAATGAAAAACTGTTTTTT CSVGSRGTNEKLFF TRBV29-1*01 TRBJ1-4*01 133.0 6557.0 CAESTSGGKLIF_CSVGSRGTNEKLFF 19 4360 EBV-BLMF1 EBV 0.75 2531 NEG 200 4160 10 EBV BLMF1 GLCTLVAML effector memory T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*02:01 B2M MHCI -732 chip0420_454352 12.96 8.28 Chip1 T1D_1 T1D TGTGCCGTGGACCCATGGGGTAACCAGTTCTATTTT CAVDPWGNQFYF TRAV39*01 TRAJ49*01 28.0 2102.0 TGTGCCACCCAACAGGGGAGGGACAGTCAGCCCCAGCATTTT CATQQGRDSQPQHF TRBV28*01 TRBJ1-5*01 60.0 3072.0 CAVDPWGNQFYF_CATQQGRDSQPQHF 16 3665 EBV-BLMF1 EBV 0.65 2531 NEG 188 3477 10 EBV BLMF1 GLCTLVAML effector memory T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*02:01 B2M MHCI -733 chip0420_423104 6.45 12.17 Chip1 T1D_1 T1D _ 6746 4346 M1 FLU 0.78 1250 NEG 182 4164 7 InfluenzaA M1 GILGFVFTL transitional T cells between effector and memory populations PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*02:01 B2M MHCI -734 chip0420_141861 -0.47 8.59 Chip1 T1D_1 T1D TGTGCCACAGGAGGAGGTGCTGACGGACTCACCTTT CATGGGADGLTF TRAV12-2*01 TRAJ45*01 21.0 2043.0 CATGGGADGLTF_ 2 6632 PGT-178 PGT 0.65 1480 PGT-178 173 6459 4 HomoSapiens PGT LLAGIGTVPI Naive T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*02:01 B2M MHCI -735 chip0420_671407 -0.78 10.63 Chip1 T1D_1 T1D _ 6746 4370 M1 FLU 0.7 1250 NEG 172 4198 3 InfluenzaA M1 GILGFVFTL Naive T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*02:01 B2M MHCI -736 chip0420_198113 10.92 10.58 Chip1 T1D_1 T1D TGTGTGGTGAACGGGGGGGATAGCAGCTATAAATTGATCTTC CVVNGGDSSYKLIF TRAV12-1*01 TRAJ12*01 78.0 3785.0 TGTGCCAGCAGTTCGGGACAGGTACTTCCCAATGAGCAGTTCTTC CASSSGQVLPNEQFF TRBV2*01 TRBJ2-1*01 31.0 2161.0 CVVNGGDSSYKLIF_CASSSGQVLPNEQFF 31 5384 EBV-BLMF1 EBV 0.5 2531 NEG 196 5188 9 EBV BLMF1 GLCTLVAML effector memory T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*02:01 B2M MHCI -737 chip0420_609441 11.09 10.86 Chip1 T1D_2 T1D TGCAGCGTTGGGGGCAGCTTCTATGGCTACACCTTC CSVGGSFYGYTF TRBV29-1*01 TRBJ1-2*01 53.0 3771.0 _CSVGGSFYGYTF 42 3239 EBV-BLMF1 EBV 0.8 2531 NEG 179 3060 9 EBV BLMF1 GLCTLVAML effector memory T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*02:01 B2M MHCI -738 chip0420_534110 11.91 10.66 Chip1 T1D_1 T1D TGTGCCAGCAGCACGGGACAGCTATCGAACACCGGGGAGCTGTTTTTT CASSTGQLSNTGELFF TRBV9*01 TRBJ2-2*01 81.0 4042.0 _CASSTGQLSNTGELFF 82 5007 EBV-BLMF1 EBV 0.65 2531 NEG 193 4814 9 EBV BLMF1 GLCTLVAML effector memory T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*02:01 B2M MHCI -739 chip0420_414613 14.07 9.51 Chip1 T1D_2 T1D TGTGCCAGCAGCCATGCACTAGAGAACACCGGGGAGCTGTTTTTT CASSHALENTGELFF TRBV3-1*01 TRBJ2-2*01 67.0 2753.0 _CASSHALENTGELFF 3 4368 EBV-BRLF1 EBV 0.8 1264 EBV-BRLF1 206 4162 12 EBV BRLF1 YVLDHLIVV effector T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*02:01 B2M MHCI -740 chip0420_500803 14.34 10.49 Chip1 T1D_2 T1D TGTGCTTCCCTAACCCCGGGGGCTTCCAAGATAATCTTT CASLTPGASKIIF TRAV8-6*01 TRAJ3*01 13.0 1277.0 TGTGCCAGCAGCTCGGAACTAGTCGCCCCCGGGGAGCTGTTTTTT CASSSELVAPGELFF TRBV2*01 TRBJ2-2*01 32.0 1763.0 CASLTPGASKIIF_CASSSELVAPGELFF 1 3316 EBV-BLMF1 EBV 0.67 2531 NEG 189 3127 12 EBV BLMF1 GLCTLVAML effector T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*02:01 B2M MHCI -741 chip0420_348154 11.01 10.85 Chip1 T1D_2 T1D TGTGCAGAGAGTACTTCGGGAGGAACGCTTATCTTC CAESTSGGTLIF TRAV5*01 TRAJ23*01 22.0 2060.0 CAESTSGGTLIF_ 1 3866 EBV-BLMF1 EBV 0.5 2531 NEG 164 3702 9 EBV BLMF1 GLCTLVAML effector memory T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*02:01 B2M MHCI -742 chip0420_653562 -4.02 8.1 Chip1 T1D_2 T1D TGTGCCAGTAGTATTCTAGCGGGGGGCTCTGGGGCCAACGTCCTGACTTTC CASSILAGGSGANVLTF TRBV19*01 TRBJ2-6*01 11.0 513.0 _CASSILAGGSGANVLTF 1 5450 ZNT8-293-300 ZNT8 0.71 17 NEG 184 5266 2 HomoSapiens ZNT8 LAVDGVLSV Naive T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*02:01 B2M MHCI -743 chip0420_70328 6.09 13.01 Chip1 T1D_1 T1D TGTGCAGCAAGTGGTGGCGGCAGCCACGGAAATCTCATCTTT CAASGGGSHGNLIF TRAV13-1*01 TRAJ42*01 17.0 511.0 TGTGCCCTAGTGTCAGGTCCCAAGAGACCCAGTACTTC CALVSGc?cQETQYF TRBV19*01 TRBJ2-5*01 34.0 1972.0 CAASGGGSHGNLIF_CALVSGc?cQETQYF 1 4061 M1 FLU 0.75 1250 M1 200 3861 7 InfluenzaA M1 GILGFVFTL transitional T cells between effector and memory populations PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*02:01 B2M MHCI -744 chip0420_109585 12.63 10.8 Chip1 T1D_1 T1D TGCAGCGTCGGCTCCAGGGGAACTAATGAAAAACTGTTTTTT CSVGSRGTNEKLFF TRBV29-1*01 TRBJ1-4*01 199.0 10908.0 _CSVGSRGTNEKLFF 283 3677 EBV-BLMF1 EBV 0.71 2531 NEG 196 3481 9 EBV BLMF1 GLCTLVAML effector memory T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*02:01 B2M MHCI -745 chip0420_226078 8.88 8.99 Chip1 T1D_1 T1D TGTGCTGTGGTCTCAAATTCCGGGTATGCACTCAACTTC CAVVSNSGYALNF TRAV21*01 TRAJ41*01 33.0 2083.0 TGTGCCAGCAGTTCCGGAGGGAACGTGGATACGCAGTATTTT CASSSGGNVDTQYF TRBV7-3*01 TRBJ2-3*01 39.0 2415.0 CAVVSNSGYALNF_CASSSGGNVDTQYF 8 4029 EBV-BLMF1 EBV 1.0 2531 NEG 231 3798 8 EBV BLMF1 GLCTLVAML effector memory T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*02:01 B2M MHCI -746 chip0420_819309 9.77 7.13 Chip1 T1D_2 T1D TGTGCAGGGCCGGGCTCTAGCAACACAGGCAAACTAATCTTT CAGPGSSNTGKLIF TRAV25*01 TRAJ37*01 1.0 301.0 TGTGCCGTGAACCTATACAGCACCCTCACCTTT CAVNLYSTLTF TRAV8-1*01 TRAJ11*01 1.0 16.0 0.33 TGTGCCAGCAGTTACATGTCCGGCGCAGCTTTCTTT CASSYMSGAAFF TRBV6-2*01,TRBV6-3*01 TRBJ1-1*01 5.0 226.0 CAGPGSSNTGKLIF_CASSYMSGAAFF 1 4345 EBV-BRLF1 EBV 0.94 1264 EBV-BRLF1 188 4157 10 EBV BRLF1 YVLDHLIVV effector memory T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*02:01 B2M MHCI -747 chip0420_591736 8.96 8.98 Chip1 T1D_1 T1D TGTGCCGTGGACCCATGGGGTAACCAGTTCTATTTT CAVDPWGNQFYF TRAV39*01 TRAJ49*01 1.0 83.0 TGTGCCACCCAACAGGGGAGGGACAGTCAGCCCCAGCATTTT CATQQGRDSQPQHF TRBV28*01 TRBJ1-5*01 91.0 3812.0 CAVDPWGNQFYF_CATQQGRDSQPQHF 16 5889 EBV-BLMF1 EBV 0.75 2531 EBV-BLMF1 204 5685 8 EBV BLMF1 GLCTLVAML effector memory T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*02:01 B2M MHCI -748 chip0420_431355 11.54 8.05 Chip1 T1D_2 T1D _ 6746 2934 EBV-BLMF1 EBV 0.86 2531 NEG 197 2737 10 EBV BLMF1 GLCTLVAML effector memory T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*02:01 B2M MHCI -749 chip0420_470585 15.73 9.92 Chip1 T1D_1 T1D _ 6746 2654 EBV-BLMF1 EBV 0.74 2531 EBV-BLMF1 188 2466 12 EBV BLMF1 GLCTLVAML effector T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*02:01 B2M MHCI -750 chip0420_126741 11.3 7.45 Chip1 T1D_2 T1D TGTGCCAGCAGCCAAACACCCGATACCCAGTACTTC CASSQTPDTQYF TRBV3-1*01 TRBJ2-5*01 29.0 2730.0 _CASSQTPDTQYF 1 3632 EBV-BRLF1 EBV 0.88 1264 EBV-BRLF1 220 3412 10 EBV BRLF1 YVLDHLIVV effector memory T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*02:01 B2M MHCI -751 chip0420_616666 -2.32 7.71 Chip1 healthy_2 healthy TGCAGTGCGGCTCCAGGGATAACGGGTCAGCCCCAGCATTTT CSAAPGITGQPQHF TRBV20-1*01 TRBJ1-5*01 24.0 1284.0 _CSAAPGITGQPQHF 1 6683 PGT-178 PGT 0.85 1480 PGT-178 160 6523 3 HomoSapiens PGT LLAGIGTVPI Naive T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*02:01 B2M MHCI -752 chip0420_364416 9.72 11.07 Chip1 T1D_2 T1D TGTGCCAGTAGACCAGTACTGGGGGGCGCAAGTGAAGCTTTCTTT CASRPVLGGASEAFF TRBV19*01 TRBJ1-1*01 21.0 809.0 _CASRPVLGGASEAFF 1 3132 EBV-BRLF1 EBV 0.87 1264 NEG 215 2917 9 EBV BRLF1 YVLDHLIVV effector memory T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*02:01 B2M MHCI -753 chip0420_766067 14.83 8.96 Chip1 T1D_2 T1D TGCAGCGTGGGGACAGGGGGAACTAATGAAAAACTGTTTTTT CSVGTGGTNEKLFF TRBV29-1*01 TRBJ1-4*01 8.0 349.0 _CSVGTGGTNEKLFF 638 2371 EBV-BLMF1 EBV 0.67 2531 NEG 181 2190 12 EBV BLMF1 GLCTLVAML effector T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*02:01 B2M MHCI -754 chip0420_725158 -3.61 12.7 Chip1 T1D_2 T1D TGTGCTGGACTGTTCAGGGAGCCCAGAAGCTGGTATTT CAGLFRg?aAQKLVF TRAV35*01 TRAJ54*01 4.0 230.0 CAGLFRg?aAQKLVF_ 1 3587 ZNT8-186-194 ZNT8 0.8 22 ZNT8-186-194 174 3413 1 HomoSapiens ZNT8 VAANIVLTV Naive T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*02:01 B2M MHCI -755 chip0420_720174 12.07 7.7 Chip1 T1D_2 T1D TGTGCCAGCAGCCCCTCGACTAGCGGGAGTGGAGAGACCCAGTACTTC CASSPSTSGSGETQYF TRBV3-1*01 TRBJ2-5*01 24.0 1308.0 _CASSPSTSGSGETQYF 18 2750 EBV-BRLF1 EBV 0.67 1264 NEG 200 2550 10 EBV BRLF1 YVLDHLIVV effector memory T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*02:01 B2M MHCI -756 chip0420_448385 15.18 8.8 Chip1 T1D_1 T1D TGTGCCAGCAGTCCGGACCAAACTAGCTCCTACAATGAGCAGTTCTTC CASSPDQTSSYNEQFF TRBV27*01 TRBJ2-1*01 19.0 794.0 _CASSPDQTSSYNEQFF 47 2157 EBV-BRLF1 EBV 0.62 1264 NEG 204 1953 12 EBV BRLF1 YVLDHLIVV effector T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*02:01 B2M MHCI -757 chip0420_388965 14.4 8.26 Chip1 T1D_2 T1D TGCAGCGTGGGGACAGGGGGAACTAATGAAAAACTGTTTTTT CSVGTGGTNEKLFF TRBV29-1*01 TRBJ1-4*01 45.0 1968.0 _CSVGTGGTNEKLFF 638 2462 EBV-BLMF1 EBV 0.6 2531 NEG 214 2248 12 EBV BLMF1 GLCTLVAML effector T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*02:01 B2M MHCI -758 chip0420_716678 9.07 9.99 Chip1 T1D_2 T1D TGCAGCGTGGGGACAGGGGGAACTAATGAAAAACTGTTTTTT CSVGTGGTNEKLFF TRBV29-1*01 TRBJ1-4*01 90.0 3969.0 _CSVGTGGTNEKLFF 638 4496 EBV-BLMF1 EBV 0.56 2531 NEG 195 4301 8 EBV BLMF1 GLCTLVAML effector memory T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*02:01 B2M MHCI -759 chip0420_555042 14.12 10.76 Chip1 T1D_2 T1D TGTGCTTCCCTAACCCCGGGGGCTTCCAAGATAATCTTT CASLTPGASKIIF TRAV8-6*01 TRAJ3*01 34.0 2166.0 TGTGCCAGCAGCTCGGGACTAGTCGCCCCCGGGGAGCTGTTTTTT CASSSGLVAPGELFF TRBV2*01 TRBJ2-2*01 50.0 2128.0 CASLTPGASKIIF_CASSSGLVAPGELFF 38 4178 EBV-BLMF1 EBV 0.57 2531 NEG 182 3996 12 EBV BLMF1 GLCTLVAML effector T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*02:01 B2M MHCI -760 chip0420_768721 0.0 7.98 Chip1 T1D_2 T1D _ 6746 6749 PGT-178 PGT 0.92 1480 PGT-178 195 6554 4 HomoSapiens PGT LLAGIGTVPI Naive T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*02:01 B2M MHCI -761 chip0420_144432 8.36 11.4 Chip1 T1D_2 T1D TGTGCCGTGAAAGTGGATGGCCAGAAGCTGCTCTTT CAVKVDGQKLLF TRAV8-1*01 TRAJ16*01 28.0 2363.0 TGTGCCTGGAGTGACCAACTAGGGGCGGCACGGGAGCTGTTTTTT CAWSDQLGAARELFF TRBV30*01 TRBJ2-2*01 87.0 3819.0 CAVKVDGQKLLF_CAWSDQLGAARELFF 2 4078 EBV-BRLF1 EBV 0.95 1264 EBV-BRLF1 222 3856 7 EBV BRLF1 YVLDHLIVV transitional T cells between effector and memory populations PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*02:01 B2M MHCI -762 chip0420_73476 9.97 9.83 Chip1 T1D_1 T1D _ 6746 3446 EBV-BLMF1 EBV 0.75 2531 NEG 197 3249 9 EBV BLMF1 GLCTLVAML effector memory T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*02:01 B2M MHCI -763 chip0420_749833 12.68 7.74 Chip1 T1D_2 T1D TGCAGCGTGGGGACAGGGGGAACTAATGAAAAACTGTTTTTT CSVGTGGTNEKLFF TRBV29-1*01 TRBJ1-4*01 65.0 3040.0 _CSVGTGGTNEKLFF 638 2109 EBV-BLMF1 EBV 0.83 2531 NEG 224 1885 10 EBV BLMF1 GLCTLVAML effector memory T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*02:01 B2M MHCI -764 chip0420_522869 8.84 7.75 Chip1 T1D_1 T1D TGTGTGGTGAACGGACGGGATAGCAGCTATAAATTGATCTTC CVVNGRDSSYKLIF TRAV12-1*01 TRAJ12*01 42.0 2121.0 TGTGCCAGCAGTGACGGTCGGGTCCACCCGGGGACCCAGTACTTC CASSDGRVHPGTQYF TRBV2*01 TRBJ2-5*01 18.0 778.0 CVVNGRDSSYKLIF_CASSDGRVHPGTQYF 14 6991 EBV-BLMF1 EBV 0.44 2531 NEG 201 6790 8 EBV BLMF1 GLCTLVAML effector memory T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*02:01 B2M MHCI -765 chip0420_789474 6.98 11.1 Chip1 T1D_1 T1D _ 6746 5466 EBV-LMP2-FLY EBV 0.74 355 EBV-LMP2-FLY 191 5275 7 EBV LMP2 FLYALALLL transitional T cells between effector and memory populations PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*02:01 B2M MHCI -766 chip0420_765985 9.8 9.91 Chip1 T1D_1 T1D TGTGCCGTGAAGGACACCGACAAGCTCATCTTT CAVKDTDKLIF TRAV8-1*01 TRAJ34*01 1.0 18.0 CAVKDTDKLIF_ 56 4559 EBV-BRLF1 EBV 0.93 1264 NEG 203 4356 9 EBV BRLF1 YVLDHLIVV effector memory T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*02:01 B2M MHCI -767 chip0420_624054 9.16 9.83 Chip1 T1D_2 T1D TGCAGCGTGGGGACAGGGGGAACTAATGAAAAACTGTTTTTT CSVGTGGTNEKLFF TRBV29-1*01 TRBJ1-4*01 35.0 1884.0 _CSVGTGGTNEKLFF 638 4838 EBV-BLMF1 EBV 0.44 2531 NEG 195 4643 8 EBV BLMF1 GLCTLVAML effector memory T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*02:01 B2M MHCI -768 chip0420_42249 8.97 9.06 Chip1 T1D_2 T1D TGCAGCGTTGGGGGCAGCTTCTATGGCTACACCTTC CSVGGSFYGYTF TRBV29-1*01 TRBJ1-2*01 36.0 3303.0 _CSVGGSFYGYTF 42 5028 EBV-BLMF1 EBV 0.76 2531 NEG 183 4845 8 EBV BLMF1 GLCTLVAML effector memory T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*02:01 B2M MHCI -769 chip0420_523364 6.17 13.22 Chip1 T1D_1 T1D TGTGCCAGTAGTGTCAGGGCAGGAGAGACCCAGTACTTC CASSVRAGETQYF TRBV19*01 TRBJ2-5*01 20.0 1236.0 _CASSVRAGETQYF 23 3960 M1 FLU 0.96 1250 M1 187 3773 7 InfluenzaA M1 GILGFVFTL transitional T cells between effector and memory populations PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*02:01 B2M MHCI -770 chip0420_613525 8.93 9.04 Chip1 T1D_1 T1D TGTGCTCTCTATAACACCGACAAGCTCATCTTT CALYNTDKLIF TRAV9-2*01 TRAJ34*01 25.0 2121.0 CALYNTDKLIF_ 10 6618 EBV-BLMF1 EBV 0.96 2531 EBV-BLMF1 228 6390 8 EBV BLMF1 GLCTLVAML effector memory T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*02:01 B2M MHCI -771 chip0420_335555 9.94 6.81 Chip1 T1D_2 T1D TGTGCCAGCAGTTACATGTCCGGCGAAGCTTTCTTT CASSYMSGEAFF TRBV6-2*01,TRBV6-3*01 TRBJ1-1*01 12.0 774.0 _CASSYMSGEAFF 8 7886 EBV-BRLF1 EBV 0.94 1264 EBV-BRLF1 226 7660 10 EBV BRLF1 YVLDHLIVV effector memory T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*02:01 B2M MHCI -772 chip0420_692299 9.74 9.59 Chip1 T1D_2 T1D TGCAGCGTTGACCAAAGGACAGGGCAAAAGAAGAACTATGGCTACACCTTC CSVDQRTGQKKNYGYTF TRBV29-1*01 TRBJ1-2*01 89.0 3710.0 _CSVDQRTGQKKNYGYTF 40 3655 EBV-BLMF1 EBV 0.78 2531 NEG 207 3448 8 EBV BLMF1 GLCTLVAML effector memory T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*02:01 B2M MHCI -773 chip0420_128517 9.18 9.55 Chip1 T1D_2 T1D TGTGCAGCATACGCAGGCCACTTGCTCACCTTT CAAYAGHLLTF TRAV29/DV5*01 TRAJ39*01 1.0 23.0 TGCGCCAGCAGGATGGGGGCCGGGGATACGCAGTATTTT CASRMGAGDTQYF TRBV10-2*01 TRBJ2-3*01 27.0 2383.0 CAAYAGHLLTF_CASRMGAGDTQYF 1 3520 EBV-BLMF1 EBV 1.0 2531 NEG 193 3327 8 EBV BLMF1 GLCTLVAML effector memory T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*02:01 B2M MHCI -774 chip0420_675832 15.15 12.79 Chip1 T1D_1 T1D TGTGCCAGCAGCACGGGACAGCTATCGAACACCGGGGAGCTGTTTTTT CASSTGQLSNTGELFF TRBV9*01 TRBJ2-2*01 59.0 3406.0 _CASSTGQLSNTGELFF 82 1669 EBV-BLMF1 EBV 0.43 2531 NEG 171 1498 12 EBV BLMF1 GLCTLVAML effector T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*02:01 B2M MHCI -775 chip0420_729668 11.95 10.05 Chip1 T1D_2 T1D TGTGCCAGCAACTTAGCGGGGAACAATGAGCAGTTCTTC CASNLAGNNEQFF TRBV9*01 TRBJ2-1*01 17.0 830.0 _CASNLAGNNEQFF 15 3759 EBV-BLMF1 EBV 0.42 2531 NEG 196 3563 9 EBV BLMF1 GLCTLVAML effector memory T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*02:01 B2M MHCI -776 chip0420_265189 10.38 8.2 Chip1 T1D_2 T1D _ 6746 3156 EBV-BLMF1 EBV 0.91 2531 NEG 193 2963 10 EBV BLMF1 GLCTLVAML effector memory T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*02:01 B2M MHCI -777 chip0420_779124 5.5 8.85 Chip1 T1D_2 T1D TGTGCCGCCACCTCCTATACCGGCACTGCCAGTAAACTCACCTTT CAATSYTGTASKLTF TRAV8-1*01 TRAJ44*01 41.0 2706.0 TGTGCCAGCAGTTTATACTACAATGAGCAGTTCTTC CASSLYYNEQFF TRBV12-3*01,TRBV12-4*01 TRBJ2-1*01 37.0 3195.0 CAATSYTGTASKLTF_CASSLYYNEQFF 3 6444 EBV-LMP1-1 EBV 0.84 237 EBV-LMP1-1 206 6238 6 EBV LMP1 YLLEMLWRL central memory T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*02:01 B2M MHCI -778 chip0420_584363 14.47 11.06 Chip1 T1D_2 T1D _ 6746 2652 EBV-BLMF1 EBV 0.8 2531 NEG 192 2460 12 EBV BLMF1 GLCTLVAML effector T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*02:01 B2M MHCI -779 chip0420_425515 13.98 8.55 Chip1 T1D_2 T1D TGTGCAGAGAGTACTTCGGGAGGAAAGCTTATCTTC CAESTSGGKLIF TRAV5*01 TRAJ23*01 61.0 4178.0 TGCAGCGTGGGGACAGGGGGAACTAATGAAAAACTGTTTTTT CSVGTGGTNEKLFF TRBV29-1*01 TRBJ1-4*01 65.0 2598.0 CAESTSGGKLIF_CSVGTGGTNEKLFF 107 2339 EBV-BLMF1 EBV 0.46 2531 NEG 227 2112 12 EBV BLMF1 GLCTLVAML effector T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*02:01 B2M MHCI -780 chip0420_278045 8.13 12.04 Chip1 T1D_2 T1D TGCAGCGTTGGAGGCACATTCTATGGCTACACCTTC CSVGGTFYGYTF TRBV29-1*01 TRBJ1-2*01 61.0 5618.0 _CSVGGTFYGYTF 12 2957 EBV-BLMF1 EBV 0.89 2531 NEG 193 2764 7 EBV BLMF1 GLCTLVAML transitional T cells between effector and memory populations PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*02:01 B2M MHCI -781 chip0420_587534 13.26 8.91 Chip1 T1D_2 T1D TGCGCCAGCAGTCAATCGAGAGGGTCGCTCTGGGATACGCAGTATTTT CASSQSRGSLWDTQYF TRBV4-3*01 TRBJ2-3*01 134.0 5995.0 _CASSQSRGSLWDTQYF 21 1833 EBV-BRLF1 EBV 0.95 1264 EBV-BRLF1 184 1649 10 EBV BRLF1 YVLDHLIVV effector memory T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*02:01 B2M MHCI -782 chip0420_520225 -0.17 6.22 Chip1 tet_neg TGTGCTTCCTACGATATGAATTATGGAGGACGCCGAGGACATCTCGTCTTT CASYDMNYGGRRGHLVF TRAV19*01 TRAJ42*01 26.0 1099.0 TGTGCCAGCAGCGTAGAGGCCGTCGATGTCGAGCAGTACTTC CASSVEAVDVEQYF TRBV9*01 TRBJ2-7*01 35.0 2702.0 CASYDMNYGGRRGHLVF_CASSVEAVDVEQYF 1 9827 IGRP-265-273 IGRP 0.81 34 IGRP-265-273 181 9646 3 HomoSapiens IGRP VLFGLGFAI Naive T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*02:01 B2M MHCI -783 chip0420_760230 6.29 12.05 Chip1 T1D_1 T1D TGTGCTGGGCGGGATAATAATGCAGGCAACATGCTCACCTTT CAGRDNNAGNMLTF TRAV35*01 TRAJ39*01 1.0 72.0 CAGRDNNAGNMLTF_ 1 4179 M1 FLU 0.88 1250 NEG 184 3995 7 InfluenzaA M1 GILGFVFTL transitional T cells between effector and memory populations PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*02:01 B2M MHCI -784 chip0420_844754 14.53 10.71 Chip1 T1D_2 T1D TATGTGATCCACGGCAGGGATAGCAAATATAAATCGATCTTC YVIHGRDSKYKSIF TRAV12-1*01 TRAJ12*01 3.0 267.0 TGTGCCAGCAGCTCGGGACTAGTCGCCCCCGGGGAGCTGTTTTTT CASSSGLVAPGELFF TRBV2*01 TRBJ2-2*01 34.0 1914.0 YVIHGRDSKYKSIF_CASSSGLVAPGELFF 1 2790 EBV-BLMF1 EBV 0.56 2531 NEG 198 2592 12 EBV BLMF1 GLCTLVAML effector T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*02:01 B2M MHCI -785 chip0420_799595 9.07 9.2 Chip1 T1D_1 T1D TGTGCCGTGAATGCGCTCGACAAGCTCATCTTT CAVNALDKLIF TRAV8-1*01 TRAJ34*01 24.0 2120.0 TGTGCCAGCAGTGAGGCGTTTCTAGCGGACAATGAGCAGTTCTTC CASSEAFLADNEQFF TRBV6-4*01 TRBJ2-1*01 9.0 304.0 CAVNALDKLIF_CASSEAFLADNEQFF 3 5436 EBV-BRLF1 EBV 0.75 1264 NEG 199 5237 8 EBV BRLF1 YVLDHLIVV effector memory T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*02:01 B2M MHCI -786 chip0420_518930 8.57 10.4 Chip1 T1D_2 T1D TGCAGCGTGGGGACAGGGGGAACTAATGAAAAACTGTTTTTT CSVGTGGTNEKLFF TRBV29-1*01 TRBJ1-4*01 102.0 4936.0 _CSVGTGGTNEKLFF 638 4770 EBV-BLMF1 EBV 0.71 2531 NEG 188 4582 8 EBV BLMF1 GLCTLVAML effector memory T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*02:01 B2M MHCI -787 chip0420_16957 13.09 7.28 Chip1 T1D_2 T1D TGCAGCGTGGGGACAGGGGGAACTAATGAAAAACTGTTTTTT CSVGTGGTNEKLFF TRBV29-1*01 TRBJ1-4*01 41.0 1923.0 _CSVGTGGTNEKLFF 638 2557 EBV-BLMF1 EBV 0.73 2531 NEG 176 2381 10 EBV BLMF1 GLCTLVAML effector memory T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*02:01 B2M MHCI -788 chip0420_62439 11.54 7.16 Chip1 T1D_2 T1D TGCAGCGTGGGGACAGGGGGAACTAATGAAAAACTGTTTTTT CSVGTGGTNEKLFF TRBV29-1*01 TRBJ1-4*01 37.0 1827.0 _CSVGTGGTNEKLFF 638 3186 EBV-BLMF1 EBV 0.45 2531 NEG 190 2996 10 EBV BLMF1 GLCTLVAML effector memory T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*02:01 B2M MHCI -789 chip0420_850611 8.39 9.46 Chip1 T1D_2 T1D TGTGCCGTGAAGGACACCGACAAGCTCATCTTT CAVKDTDKLIF TRAV8-1*01 TRAJ34*01 7.0 369.0 CAVKDTDKLIF_ 56 5736 EBV-BRLF1 EBV 0.96 1264 EBV-BRLF1 187 5549 8 EBV BRLF1 YVLDHLIVV effector memory T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*02:01 B2M MHCI -790 chip0420_570973 6.59 11.85 Chip1 T1D_1 T1D TGTGCCAGCCGCCCCACGCTAGATACGCAGTATTTT CASRPTLDTQYF TRBV7-9*01 TRBJ2-3*01 3.0 139.0 _CASRPTLDTQYF 1 4523 PGT-178 PGT 0.46 1480 NEG 177 4346 7 HomoSapiens PGT LLAGIGTVPI transitional T cells between effector and memory populations PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*02:01 B2M MHCI -791 chip0420_271869 13.59 7.84 Chip1 T1D_2 T1D TGTGCTGTGGGTGACAGAACCTACAAATACATCTTT CAVGDRTYKYIF TRAV8-3*01 TRAJ40*01 16.0 1171.0 TGTGCAGGCGGCTTTCACCCCCGCTCCTCTGT CAGGFc?aPPLLC TRAV13-2*01 TRAJ32*01 11.0 1000.0 0.34 TGTGCCAGCAGTTGGACAGCCTCCTACGAGCAGTACTTC CASSWTASYEQYF TRBV6-2*01,TRBV6-3*01 TRBJ2-7*01 30.0 1788.0 CAVGDRTYKYIF_CASSWTASYEQYF 1 2508 EBV-BRLF1 EBV 0.87 1264 EBV-BRLF1 210 2298 10 EBV BRLF1 YVLDHLIVV effector memory T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*02:01 B2M MHCI -792 chip0420_210209 11.42 10.66 Chip1 T1D_1 T1D TGTGCCAGCAGTCTTTTTTCGAGTGAGCAGTTCTTC CASSLFSSEQFF TRBV28*01 TRBJ2-1*01 21.0 1465.0 _CASSLFSSEQFF 4 5091 EBV-BRLF1 EBV 0.88 1264 EBV-BRLF1 208 4883 9 EBV BRLF1 YVLDHLIVV effector memory T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*02:01 B2M MHCI -793 chip0420_373472 15.1 9.9 Chip1 T1D_1 T1D TGTGCCAGCAGCACGGGACAGCTATCGAACACCGGGGAGCTGTTTTTT CASSTGQLSNTGELFF TRBV9*01 TRBJ2-2*01 53.0 2691.0 _CASSTGQLSNTGELFF 82 2471 EBV-BLMF1 EBV 0.4 2531 NEG 171 2300 12 EBV BLMF1 GLCTLVAML effector T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*02:01 B2M MHCI -794 chip0420_807533 6.18 13.28 Chip1 T1D_1 T1D TGTGCCAGTAGTATAAATGGGGGCCGGAGGGATGGCTACACCTTC CASSINGGRRDGYTF TRBV19*01 TRBJ1-2*01 16.0 680.0 _CASSINGGRRDGYTF 32 3899 M1 FLU 0.73 1250 M1 187 3712 7 InfluenzaA M1 GILGFVFTL transitional T cells between effector and memory populations PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*02:01 B2M MHCI -795 chip0420_19497 5.87 12.28 Chip1 T1D_1 T1D _ 6746 5061 M1 FLU 0.94 1250 M1 190 4871 7 InfluenzaA M1 GILGFVFTL transitional T cells between effector and memory populations PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*02:01 B2M MHCI -796 chip0420_872539 11.01 8.2 Chip1 T1D_2 T1D TGCGCCAGCAGAGCGGGAGCCGGGGATACGCAGTATTTT CASRAGAGDTQYF TRBV10-2*01 TRBJ2-3*01 20.0 1020.0 _CASRAGAGDTQYF 59 4840 EBV-BLMF1 EBV 0.86 2531 NEG 222 4618 10 EBV BLMF1 GLCTLVAML effector memory T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*02:01 B2M MHCI -797 chip0420_803582 13.17 9.49 Chip1 T1D_1 T1D TGCATCCTGAGACGCTATGGAGGAAGCCAAGGAAATCTCATCTTT CILRRYGGSQGNLIF TRAV26-2*01 TRAJ42*01 4.0 326.0 TGTGCCAGCAGCCCAGTTAGCGGGTCAACCTACGAGCAGTACTTC CASSPVSGSTYEQYF TRBV3-1*01 TRBJ2-7*01 17.0 1073.0 CILRRYGGSQGNLIF_CASSPVSGSTYEQYF 8 3107 EBV-BLMF1 EBV 0.62 2531 NEG 187 2920 12 EBV BLMF1 GLCTLVAML effector T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*02:01 B2M MHCI -798 chip0420_678577 15.37 9.15 Chip1 T1D_1 T1D TGTGCCAGCAGCCCAGTTAGCGGGTCAACCTACGAGCAGTACTTC CASSPVSGSTYEQYF TRBV3-1*01 TRBJ2-7*01 19.0 1472.0 _CASSPVSGSTYEQYF 80 2819 EBV-BLMF1 EBV 0.89 2531 EBV-BLMF1 204 2615 12 EBV BLMF1 GLCTLVAML effector T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*02:01 B2M MHCI -799 chip0420_469196 13.45 11.34 Chip1 T1D_2 T1D TGCAGCTCGCAGGAGGGCGGCTATGGCTACACCTTC CSSQEGGYGYTF TRBV29-1*01 TRBJ1-2*01 25.0 1404.0 _CSSQEGGYGYTF 11 1826 EBV-BLMF1 EBV 0.7 2531 NEG 215 1611 10 EBV BLMF1 GLCTLVAML effector memory T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*02:01 B2M MHCI -800 chip0420_776266 10.43 10.57 Chip1 T1D_2 T1D TGTGCAGAGAGTACTTCGGGAGGAAAGCTTATCTTC CAESTSGGKLIF TRAV5*01 TRAJ23*01 6.0 714.0 TGCAGCGTGGGGACAGGGGGAACTAATGAAAAACTGTTTTTT CSVGTGGTNEKLFF TRBV29-1*01 TRBJ1-4*01 136.0 7666.0 CAESTSGGKLIF_CSVGTGGTNEKLFF 107 3524 EBV-BLMF1 EBV 0.58 2531 NEG 178 3346 9 EBV BLMF1 GLCTLVAML effector memory T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*02:01 B2M MHCI -801 chip0420_838515 14.15 13.12 Chip1 T1D_1 T1D TGTGCTGACTTAGAATGCTGGCAACCACCGTAAGCTGATTTGG CADLECW??cNHRKLIW TRAV36/DV7*01 TRAJ38*01 52.0 1991.0 TGTGCCAGCAGCACGGGACAGCTATCGAACACCGGGGAGCTGTTTTTT CASSTGQLSNTGELFF TRBV9*01 TRBJ2-2*01 72.0 3062.0 CADLECW??cNHRKLIW_CASSTGQLSNTGELFF 2 1466 EBV-BLMF1 EBV 0.88 2531 NEG 191 1275 12 EBV BLMF1 GLCTLVAML effector T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*02:01 B2M MHCI -802 chip0420_616114 10.4 8.92 Chip1 T1D_2 T1D TGCAGCGTGGGGACAGGGGGAACTAATGAAAAACTGTTTTTT CSVGTGGTNEKLFF TRBV29-1*01 TRBJ1-4*01 74.0 3677.0 _CSVGTGGTNEKLFF 638 3734 EBV-BLMF1 EBV 1.0 2531 NEG 182 3552 10 EBV BLMF1 GLCTLVAML effector memory T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*02:01 B2M MHCI -803 chip0420_592275 6.15 13.02 Chip1 T1D_1 T1D TGTGCCAGTAGTGTCAGGGCAGGAGAGACCCAGTACTTC CASSVRAGETQYF TRBV19*01 TRBJ2-5*01 6.0 272.0 _CASSVRAGETQYF 23 5584 M1 FLU 0.84 1250 M1 206 5378 7 InfluenzaA M1 GILGFVFTL transitional T cells between effector and memory populations PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*02:01 B2M MHCI -804 chip0420_795383 6.72 11.81 Chip1 T1D_2 T1D _ 6746 3492 MART1-ALA MART1 0.58 269 NEG 194 3298 7 HomoSapiens MART1 ALAGIGILTV transitional T cells between effector and memory populations PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*02:01 B2M MHCI -805 chip0420_480665 15.29 10.7 Chip1 T1D_2 T1D TGTGCCAGCAGTTACATGTCCGGCGAAGCTTTCTTT CASSYMSGEAFF TRAV9-1*01,TRAV8-1*01 TRAJ40*01 2.0 10.0 TGTGCCAGCAGTTACATGTCCGGCGAAGCTTTCTTT CASSYMSGEAFF TRBV6-2*01,TRBV6-3*01 TRBJ1-1*01 50.0 3354.0 CASSYMSGEAFF_CASSYMSGEAFF 2 2148 EBV-BRLF1 EBV 0.98 1264 EBV-BRLF1 182 1966 12 EBV BRLF1 YVLDHLIVV effector T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*02:01 B2M MHCI -806 chip0420_342982 9.88 9.53 Chip1 T1D_2 T1D TGCAGCGTTGACCAAAGGACAGGGCAAAAGAAGAACTATGGCTACACCTTC CSVDQRTGQKKNYGYTF TRBV29-1*01 TRBJ1-2*01 235.0 10273.0 _CSVDQRTGQKKNYGYTF 40 2909 EBV-BLMF1 EBV 1.0 2531 NEG 197 2712 8 EBV BLMF1 GLCTLVAML effector memory T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*02:01 B2M MHCI -807 chip0420_122062 13.33 8.49 Chip1 T1D_2 T1D TGTGCCAGCAGTTTATCAGTACTCTCCTACAATGAGCAGTTCTTC CASSLSVLSYNEQFF TRBV27*01 TRBJ2-1*01 36.0 1591.0 _CASSLSVLSYNEQFF 2 2300 EBV-BRLF1 EBV 0.93 1264 EBV-BRLF1 185 2115 10 EBV BRLF1 YVLDHLIVV effector memory T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*02:01 B2M MHCI -808 chip0420_464019 10.83 10.47 Chip1 T1D_1 T1D TGTGCAGAGGCGGCCAACCAGGCCGGGCCTGCTCTGCTCTTT CAEAANQAGPALLF TRAV5*01 TRAJ15*01 40.0 2076.0 TGTGCCAGCAGCCAAAGCCCGGGTGGTACGCAGTATTTT CASSQSPGGTQYF TRBV14*01 TRBJ2-3*01 45.0 1294.0 CAEAANQAGPALLF_CASSQSPGGTQYF 1 4993 EBV-BLMF1 EBV 0.5 2531 NEG 189 4804 9 EBV BLMF1 GLCTLVAML effector memory T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*02:01 B2M MHCI -809 chip0420_137234 13.93 10.91 Chip1 T1D_2 T1D TGTGCTTCCCTAACCCCGGGGGCTTCCAAGATAATCTTT CASLTPGASKIIF TRAV8-6*01 TRAJ3*01 30.0 2155.0 TGTGCCAGCAGCTCGGGACTAGTCGCCCCCGGGGAGCTGTTTTTT CASSSGLVAPGELFF TRBV2*01 TRBJ2-2*01 29.0 2163.0 CASLTPGASKIIF_CASSSGLVAPGELFF 38 3342 EBV-BLMF1 EBV 0.7 2531 NEG 179 3163 12 EBV BLMF1 GLCTLVAML effector T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*02:01 B2M MHCI -810 chip0420_3147 9.96 10.58 Chip1 T1D_1 T1D TGTGCCAGCAGTTCGGGACAGGTACTTCCCAATGAGCAGTTCTTC CASSSGQVLPNEQFF TRBV2*01 TRBJ2-1*01 80.0 5598.0 _CASSSGQVLPNEQFF 61 3505 EBV-BLMF1 EBV 0.44 2531 NEG 168 3337 9 EBV BLMF1 GLCTLVAML effector memory T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*02:01 B2M MHCI -811 chip0420_327612 -1.84 8.32 Chip1 T1D_1 T1D TGTGCCAGCAGCGAACTAGCGGGAACCCACGAGCAGTACTTC CASSELAGTHEQYF TRBV2*01 TRBJ2-7*01 44.0 2580.0 _CASSELAGTHEQYF 1 5825 PGT-178 PGT 0.46 1480 PGT-178 177 5648 4 HomoSapiens PGT LLAGIGTVPI Naive T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*02:01 B2M MHCI -812 chip0420_34015 4.97 11.22 Chip1 T1D_2 T1D TGTGCCGTGAACGGTGGAAACAAACTGGTCTTT CAVNGGNKLVF TRAV12-2*01 TRAJ47*01 49.0 4521.0 TGCAGTGCTGTGACAGGGGGAGGTGACACTGAAGCTTTCTTT CSAVTGGGDTEAFF TRBV20-1*01 TRBJ1-1*01 44.0 2524.0 CAVNGGNKLVF_CSAVTGGGDTEAFF 1 6456 MART1-ALA MART1 0.64 269 NEG 195 6261 6 HomoSapiens MART1 ALAGIGILTV central memory T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*02:01 B2M MHCI -813 chip0420_672868 6.29 12.75 Chip1 T1D_1 T1D TGTGCCAGTAGTATAAATGGGGGCCGGAGGGATGGCTACACCTTC CASSINGGRRDGYTF TRBV19*01 TRBJ1-2*01 43.0 2418.0 _CASSINGGRRDGYTF 32 7100 M1 FLU 0.81 1250 M1 180 6920 7 InfluenzaA M1 GILGFVFTL transitional T cells between effector and memory populations PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*02:01 B2M MHCI -814 chip0420_450212 14.44 8.98 Chip1 T1D_1 T1D TGTGCCACCCAACAGGGGAGGGACAGTCAGCCCCAGCATTTT CATQQGRDSQPQHF TRBV28*01 TRBJ1-5*01 34.0 1112.0 _CATQQGRDSQPQHF 52 3090 EBV-BLMF1 EBV 0.69 2531 NEG 168 2922 12 EBV BLMF1 GLCTLVAML effector T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*02:01 B2M MHCI -815 chip0420_579671 15.19 10.87 Chip1 T1D_2 T1D TGCAGCGTGGGGACAGGGGGAACTAATGAAAAACTGTTTTTT CSVGTGGTNEKLFF TRBV29-1*01 TRBJ1-4*01 102.0 3820.0 _CSVGTGGTNEKLFF 638 3132 EBV-BLMF1 EBV 0.62 2531 NEG 194 2938 12 EBV BLMF1 GLCTLVAML effector T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*02:01 B2M MHCI -816 chip0420_88236 9.02 11.04 Chip1 T1D_1 T1D _ 6746 5812 EBV-BLMF1 EBV 0.87 2531 EBV-BLMF1 192 5620 9 EBV BLMF1 GLCTLVAML effector memory T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*02:01 B2M MHCI -817 chip0420_82064 8.5 10.36 Chip1 T1D_2 T1D _ 6746 3974 EBV-BRLF1 EBV 0.95 1264 EBV-BRLF1 192 3782 8 EBV BRLF1 YVLDHLIVV effector memory T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*02:01 B2M MHCI -818 chip0420_843019 11.65 7.47 Chip1 T1D_2 T1D TGTGCAGCATACGCAGGCAACATGCTCACCTTT CAAYAGNMLTF TRAV29/DV5*01 TRAJ39*01 26.0 2480.0 TGCGCCAACAGGATGGGGGCCGGGGATACGCAGTATTTT CANRMGAGDTQYF TRBV10-2*01 TRBJ2-3*01 3.0 79.0 CAAYAGNMLTF_CANRMGAGDTQYF 2 2791 EBV-BLMF1 EBV 0.77 2531 NEG 204 2587 10 EBV BLMF1 GLCTLVAML effector memory T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*02:01 B2M MHCI -819 chip0420_617384 6.3 11.92 Chip1 T1D_1 T1D TGTGCCAGCGGTTTAGGAGCGGGGGAGGCTATGGCTACACCTTC CASGLGAg?gGGYGYTF TRBV27*01 TRBJ1-2*01 3.0 12.0 _CASGLGAg?gGGYGYTF 1 5955 M1 FLU 0.9 1250 M1 179 5776 7 InfluenzaA M1 GILGFVFTL transitional T cells between effector and memory populations PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*02:01 B2M MHCI -820 chip0420_3698 9.49 9.75 Chip1 T1D_2 T1D TGCAGCGTTGGGGGCAGCTTCTATGGCTACACCTTC CSVGGSFYGYTF TRBV29-1*01 TRBJ1-2*01 128.0 11349.0 _CSVGGSFYGYTF 42 4049 EBV-BLMF1 EBV 0.89 2531 EBV-BLMF1 178 3871 8 EBV BLMF1 GLCTLVAML effector memory T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*02:01 B2M MHCI -821 chip0420_89843 15.24 10.24 Chip1 T1D_2 T1D TGCATCGTCAGCGTTCGTTATCAGGCCACACACCTCTCGTCTTT CIVSVRYc?aGHTPLVF TRAV26-1*01 TRAJ29*01 2.0 226.0 CIVSVRYc?aGHTPLVF_ 1 2626 EBV-BRLF1 EBV 0.85 1264 EBV-BRLF1 190 2436 12 EBV BRLF1 YVLDHLIVV effector T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*02:01 B2M MHCI -822 chip0420_449458 8.74 9.76 Chip1 T1D_2 T1D TGCGCCAGCAGTCAATCGAGAGGGTCGCTCTGGGATACGCAGTATTTT CASSQSRGSLWDTQYF TRBV4-3*01 TRBJ2-3*01 39.0 985.0 _CASSQSRGSLWDTQYF 21 4452 EBV-BRLF1 EBV 0.9 1264 EBV-BRLF1 200 4252 8 EBV BRLF1 YVLDHLIVV effector memory T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*02:01 B2M MHCI -823 chip0420_858877 5.55 13.18 Chip1 T1D_1 T1D TATGCCAGTAGTTTTGGAGCCGGGGAGCTGTTTTTT YASSFGAGELFF TRBV19*01 TRBJ2-2*01 31.0 2113.0 _YASSFGAGELFF 1 4687 M1 FLU 0.78 1250 M1 209 4478 7 InfluenzaA M1 GILGFVFTL transitional T cells between effector and memory populations PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*02:01 B2M MHCI -824 chip0420_833264 12.33 10.26 Chip1 T1D_1 T1D _ 6746 3195 EBV-BLMF1 EBV 1.0 2531 NEG 186 3009 9 EBV BLMF1 GLCTLVAML effector memory T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*02:01 B2M MHCI -825 chip0420_510850 10.34 10.61 Chip1 T1D_2 T1D TGTGTGGTGAACGGCAGAGATAGCAGCTATAAATTGATCTTC CVVNGRDSSYKLIF TRAV12-1*01 TRAJ12*01 41.0 2074.0 TGTGCCAGCAGCTCGGGTCTAGTCGCCCCCGGGGAGCTGTTTTTT CASSSGLVAPGELFF TRBV2*01 TRBJ2-2*01 20.0 1181.0 CVVNGRDSSYKLIF_CASSSGLVAPGELFF 98 4537 EBV-BLMF1 EBV 1.0 2531 NEG 192 4345 9 EBV BLMF1 GLCTLVAML effector memory T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*02:01 B2M MHCI -826 chip0420_728345 11.96 6.53 Chip1 T1D_2 T1D TGCAGCGTGGGGACACCTCCAACTAATGAAAAACTGTTTTTT CSVGTPPTNEKLFF TRBV29-1*01 TRBJ1-4*01 93.0 5308.0 _CSVGTPPTNEKLFF 23 3324 EBV-BLMF1 EBV 0.55 2531 NEG 203 3121 10 EBV BLMF1 GLCTLVAML effector memory T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*02:01 B2M MHCI -827 chip0420_334784 9.0 9.17 Chip1 T1D_1 T1D TGCAGCGTCACAACCGACAGGAATAGCAATCAGCCCCAGCATTTT CSVTTDRNSNQPQHF TRBV29-1*01 TRBJ1-5*01 148.0 7328.0 _CSVTTDRNSNQPQHF 10 5136 EBV-BLMF1 EBV 0.59 2531 EBV-BLMF1 184 4952 8 EBV BLMF1 GLCTLVAML effector memory T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*02:01 B2M MHCI -828 chip0420_298492 14.79 8.79 Chip1 T1D_2 T1D TGCAGCGTGGGGACAGGGGGAACTAATGAAAAACTGTTTTTT CSVGTGGTNEKLFF TRBV29-1*01 TRBJ1-4*01 182.0 8454.0 _CSVGTGGTNEKLFF 638 3092 EBV-BLMF1 EBV 1.0 2531 NEG 163 2929 12 EBV BLMF1 GLCTLVAML effector T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*02:01 B2M MHCI -829 chip0420_346172 6.19 12.88 Chip1 T1D_1 T1D TGTGCCAGTAGTGTCAGGGCAGGAGAGACCCAGTACTTC CASSVRAGETQYF TRBV19*01 TRBJ2-5*01 14.0 586.0 _CASSVRAGETQYF 23 3767 M1 FLU 0.96 1250 M1 185 3582 7 InfluenzaA M1 GILGFVFTL transitional T cells between effector and memory populations PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*02:01 B2M MHCI -830 chip0420_16541 10.64 7.26 Chip1 T1D_1 T1D TGCGGCACAGAGGAACCTAACGACTACAAGCTCAGCTTT CGTEEPNDYKLSF TRAV30*01 TRAJ20*01 64.0 4385.0 TGTGCCAGTAGCACGGGACAGCTATCGAACACCGGGGAGCTGTTTTTT CASSTGQLSNTGELFF TRBV9*01 TRBJ2-2*01 18.0 668.0 CGTEEPNDYKLSF_CASSTGQLSNTGELFF 18 4856 EBV-BLMF1 EBV 0.57 2531 NEG 198 4658 10 EBV BLMF1 GLCTLVAML effector memory T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*02:01 B2M MHCI -831 chip0420_383755 7.93 11.0 Chip1 T1D_2 T1D TGTGCCAGCAGCAGAAGGACCCTAAACTCTGGGGCCAACGTCCTGACTTTC CASSRRTLNSGANVLTF TRBV13*01 TRBJ2-6*01 29.0 1529.0 _CASSRRTLNSGANVLTF 9 3846 EBV-BRLF1 EBV 0.86 1264 EBV-BRLF1 196 3650 7 EBV BRLF1 YVLDHLIVV transitional T cells between effector and memory populations PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*02:01 B2M MHCI -832 chip0420_301564 12.15 6.55 Chip1 T1D_2 T1D TGTGCAGAGAGTACTTCGGGAGGAAAGCTTATCTTC CAESTSGGKLIF TRAV5*01 TRAJ23*01 28.0 2098.0 TGCAGCGTGGGGACAGGGGGAACTAATGAAAAACTGTTTTTT CSVGTGGTNEKLFF TRBV29-1*01 TRBJ1-4*01 86.0 4683.0 CAESTSGGKLIF_CSVGTGGTNEKLFF 107 3843 EBV-BLMF1 EBV 0.75 2531 NEG 222 3621 10 EBV BLMF1 GLCTLVAML effector memory T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*02:01 B2M MHCI -833 chip0420_857903 9.19 11.25 Chip1 T1D_2 T1D TGTGCAGCTCCCCCGCCGAATGCAGGCAACATGCTCCCCTTT CAAPPPNAGNMLPF TRAV29/DV5*01 TRAJ39*01 30.0 2192.0 TGTGCCAGCAGCCCAGGGACGGGAGGGCACGAGCAGTACTTC CASSPGTGGHEQYF TRBV7-9*01 TRBJ2-7*01 39.0 2722.0 CAAPPPNAGNMLPF_CASSPGTGGHEQYF 1 4064 EBV-BLMF1 EBV 1.0 2531 NEG 204 3860 9 EBV BLMF1 GLCTLVAML effector memory T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*02:01 B2M MHCI -834 chip0420_654435 7.54 7.65 Chip1 T1D_2 T1D TGTGCCAGTAGTATAGGACAAACCGGGGAGCTGTTTTTT CASSIGQTGELFF TRBV19*01 TRBJ2-2*01 13.0 719.0 _CASSIGQTGELFF 2 2456 HCV-L2I HCV 0.43 9 NEG 221 2235 8 HCV POL KIVALGINAV effector memory T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*02:01 B2M MHCI -835 chip0420_426003 15.23 9.1 Chip1 T1D_2 T1D TGCAGCGTTGACCAAAGGACAGGGCAAAAGAAGAACTATGGCTACACCTTC CSVDQRTGQKKNYGYTF TRBV29-1*01 TRBJ1-2*01 73.0 3063.0 _CSVDQRTGQKKNYGYTF 40 2873 EBV-BLMF1 EBV 0.71 2531 NEG 222 2651 12 EBV BLMF1 GLCTLVAML effector T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*02:01 B2M MHCI -836 chip0420_40871 8.48 9.1 Chip1 T1D_1 T1D TGTGCCAGCAGCCCAGTTAGCGGGTCAACCTACGAGCAGTACTTC CASSPVSGSTYEQYF TRBV3-1*01 TRBJ2-7*01 87.0 4641.0 _CASSPVSGSTYEQYF 80 5704 EBV-BLMF1 EBV 0.92 2531 EBV-BLMF1 205 5499 8 EBV BLMF1 GLCTLVAML effector memory T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*02:01 B2M MHCI -837 chip0420_835104 13.12 11.29 Chip1 T1D_2 T1D TGTGTGGTGAACCCCCCCCACGACTACAAGCTCAGCTTT CVVNPPHDYKLSF TRAV12-1*01 TRAJ20*01 24.0 2161.0 TGTGCCAGCAGCGTAGGGGTTCTTAGCGCCGGGGAGCTGTTTTTT CASSVGVLSAGELFF TRBV9*01 TRBJ2-2*01 20.0 1027.0 CVVNPPHDYKLSF_CASSVGVLSAGELFF 4 1902 EBV-BLMF1 EBV 0.62 2531 NEG 196 1706 9 EBV BLMF1 GLCTLVAML effector memory T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*02:01 B2M MHCI -838 chip0420_559186 -0.88 7.52 Chip1 T1D_1 T1D _ 6746 5101 IGRP-152-160-WLI IGRP 0.43 27 IGRP-152-160-WLI 180 4921 3 HomoSapiens IGRP FLWSVFWLI Naive T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*02:01 B2M MHCI -839 chip0420_377847 11.02 7.64 Chip1 T1D_2 T1D TGCGCCAGCAGGATGGGGGCCGGGGATACGCAGTATTTT CASRMGAGDTQYF TRBV10-2*01 TRBJ2-3*01 56.0 3697.0 _CASRMGAGDTQYF 90 3157 EBV-BLMF1 EBV 0.6 2531 NEG 180 2977 10 EBV BLMF1 GLCTLVAML effector memory T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*02:01 B2M MHCI -840 chip0420_32554 12.46 7.43 Chip1 T1D_2 T1D TGTGCAGCATACGCAGGCAACATGCTCACCTTT CAAYAGNMLTF TRAV29/DV5*01 TRAJ39*01 10.0 1065.0 TGCGCCAGCAGGATGGGGGCCGGGGATACGCAGTATTTT CASRMGAGDTQYF TRBV10-2*01 TRBJ2-3*01 61.0 3713.0 CAAYAGNMLTF_CASRMGAGDTQYF 21 2507 EBV-BLMF1 EBV 0.86 2531 NEG 216 2291 10 EBV BLMF1 GLCTLVAML effector memory T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*02:01 B2M MHCI -841 chip0420_314945 -2.14 9.85 Chip1 T1D_1 T1D TGCAGTGCTAGACGGACAGGACAGGAGACCCAGTACTTC CSARRTGQETQYF TRBV20-1*01 TRBJ2-5*01 1.0 10.0 _CSARRTGQETQYF 1 4465 GP160-311-320 HIV 0.92 109 NEG 193 4272 3 HIV-1 GP160 RGPGRAFVTI Naive T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*02:01 B2M MHCI -842 chip0420_159956 10.83 12.88 Chip1 T1D_2 T1D TGCAGCGTTGGGGGCAGCTTCTATGGCCACACCTTC CSVGGSFYGHTF TRBV29-1*01 TRBJ1-2*01 1.0 69.0 _CSVGGSFYGHTF 1 2307 EBV-BRLF1 EBV 0.93 1264 EBV-BRLF1 181 2126 11 EBV BRLF1 YVLDHLIVV effector T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*02:01 B2M MHCI -843 chip0420_745892 11.26 6.78 Chip1 T1D_2 T1D TGTGCCAGCAGTGGAGGGGCGGTCGCGCCGAGTGAGCAGTTCTTC CASSGGAVAPSEQFF TRBV2*01 TRBJ2-1*01 39.0 2869.0 _CASSGGAVAPSEQFF 6 4920 EBV-BLMF1 EBV 0.62 2531 NEG 208 4712 10 EBV BLMF1 GLCTLVAML effector memory T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*02:01 B2M MHCI -844 chip0420_640971 5.13 10.87 Chip1 T1D_1 T1D _ 6746 3809 ZNT8-16-24 ZNT8 0.86 39 ZNT8-16-24 174 3635 6 HomoSapiens ZNT8 KMYAFTLES central memory T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*02:01 B2M MHCI -845 chip0420_622337 -2.63 8.53 Chip1 T1D_1 T1D TGTGCCTCGGAAGGGACGGGCAGGAGAGCACTTACTTTT CASEGTGRRALTF TRAV12-2*01 TRAJ5*01 1.0 257.0 CASEGTGRRALTF_ 2 6923 PGT-178 PGT 0.64 1480 PGT-178 182 6741 2 HomoSapiens PGT LLAGIGTVPI Naive T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*02:01 B2M MHCI -846 chip0420_155136 12.82 7.82 Chip1 T1D_1 T1D _ 6746 2388 EBV-BLMF1 EBV 0.9 2531 EBV-BLMF1 182 2206 10 EBV BLMF1 GLCTLVAML effector memory T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*02:01 B2M MHCI -847 chip0420_143693 10.81 9.23 Chip1 T1D_2 T1D TGTGCTGTCCTTATGGATAGCAACTATCAGTTAATCTGG CAVLMDSNYQLIW TRAV21*01 TRAJ33*01 29.0 2111.0 TGCGCCAGCAGTGAGGACGGTATGAACACTGAAGCTTTCTTT CASSEDGMNTEAFF TRBV10-2*01 TRBJ1-1*01 32.0 1267.0 CAVLMDSNYQLIW_CASSEDGMNTEAFF 6 4972 EBV-LMP2A EBV 0.88 700 EBV-LMP2A 187 4785 10 EBV LMP2A CLGGLLTMV effector memory T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*02:01 B2M MHCI -848 chip0420_533255 14.15 7.51 Chip1 T1D_2 T1D TGCAGCGTTGGGGGCAGCTTCTATGGCTACACCTTC CSVGGSFYGYTF TRBV29-1*01 TRBJ1-2*01 22.0 1632.0 _CSVGGSFYGYTF 42 2379 EBV-BLMF1 EBV 0.61 2531 NEG 231 2148 10 EBV BLMF1 GLCTLVAML effector memory T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*02:01 B2M MHCI -849 chip0420_37756 10.53 10.92 Chip1 T1D_2 T1D TGTGCAATGAGAGAGGGCCGGGATAGCAACTATCAGTTAATCTGG CAMREGRDSNYQLIW TRAV14/DV4*01 TRAJ33*01 53.0 1983.0 TGCGCCAGCAGCTTGGGCGACAGGTTGGTGACAGATACGCAGTATTTT CASSLGDRLVTDTQYF TRBV5-1*01 TRBJ2-3*01 20.0 937.0 CAMREGRDSNYQLIW_CASSLGDRLVTDTQYF 1 3041 EBV-BLMF1 EBV 0.82 2531 NEG 197 2844 9 EBV BLMF1 GLCTLVAML effector memory T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*02:01 B2M MHCI -850 chip0420_618237 9.35 7.55 Chip1 T1D_1 T1D _ 6746 5166 EBV-BRLF1 EBV 0.95 1264 EBV-BRLF1 184 4982 8 EBV BRLF1 YVLDHLIVV effector memory T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*02:01 B2M MHCI -851 chip0420_462877 14.7 10.78 Chip1 T1D_1 T1D TGTGCCAGCAGCCCAGTTAGCGGGTCAACCTACGAGCAGTACTTC CASSPVSGSTYEQYF TRBV3-1*01 TRBJ2-7*01 135.0 6107.0 _CASSPVSGSTYEQYF 80 3123 EBV-BLMF1 EBV 1.0 2531 NEG 179 2944 12 EBV BLMF1 GLCTLVAML effector T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*02:01 B2M MHCI -852 chip0420_147587 12.52 7.45 Chip1 T1D_2 T1D TGCAGCGTTGGGGGCAGCTTCTATGGCTACACCTTC CSVGGSFYGYTF TRBV29-1*01 TRBJ1-2*01 19.0 2654.0 _CSVGGSFYGYTF 42 2366 EBV-BLMF1 EBV 0.73 2531 NEG 205 2161 10 EBV BLMF1 GLCTLVAML effector memory T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*02:01 B2M MHCI -853 chip0420_754667 13.98 10.07 Chip1 T1D_1 T1D _ 6746 3946 EBV-BLMF1 EBV 0.8 2531 NEG 162 3784 12 EBV BLMF1 GLCTLVAML effector T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*02:01 B2M MHCI -854 chip0420_205498 7.91 13.63 Chip1 T1D_1 T1D _ 6746 2880 M1 FLU 0.82 1250 NEG 174 2706 7 InfluenzaA M1 GILGFVFTL transitional T cells between effector and memory populations PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*02:01 B2M MHCI -855 chip0420_437584 15.76 10.1 Chip1 T1D_1 T1D TGTGCAGAGGCGGCCAACCAGGCAGGAACTGCTCTGATCTTT CAEAANQAGTALIF TRAV5*01 TRAJ15*01 9.0 659.0 TGTGCCAGCAGCCAAAGCCCGGGTGGTACGCAGTATTTT CASSQSPGGTQYF TRBV14*01 TRBJ2-3*01 9.0 590.0 CAEAANQAGTALIF_CASSQSPGGTQYF 9 2399 EBV-BLMF1 EBV 0.77 2531 NEG 192 2207 12 EBV BLMF1 GLCTLVAML effector T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*02:01 B2M MHCI -856 chip0420_52469 8.46 8.72 Chip1 T1D_1 T1D TGTGCTGTCAGATTGGGATATGGTGGTGCTACAAACAAGCTCATCTTT CAVRLGYGGATNKLIF TRAV41*01 TRAJ32*01 54.0 2066.0 TGTGCCAGCAGCGTAGGGGGCGAAGCCTACGAGCAGTACTTC CASSVGGEAYEQYF TRBV9*01 TRBJ2-7*01 50.0 3037.0 CAVRLGYGGATNKLIF_CASSVGGEAYEQYF 1 5716 EBV-BLMF1 EBV 0.57 2531 NEG 168 5548 8 EBV BLMF1 GLCTLVAML effector memory T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*02:01 B2M MHCI -857 chip0420_269775 6.61 12.76 Chip1 T1D_1 T1D TGTGGCACTCAAGAGAATGACAGCTGGGGGAAATTGCAGTTT CGTQENDSWGKLQF TRAV30*01 TRAJ24*01 30.0 2060.0 TGTGCCAGTAGTGTCAGGGCAGGAGAGACCCAGTACTTC CASSVRAGETQYF TRBV19*01 TRBJ2-5*01 1.0 22.0 CGTQENDSWGKLQF_CASSVRAGETQYF 9 4942 M1 FLU 0.92 1250 M1 203 4739 7 InfluenzaA M1 GILGFVFTL transitional T cells between effector and memory populations PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*02:01 B2M MHCI -858 chip0420_16834 13.37 6.65 Chip1 T1D_2 T1D TGTGCAGAGAGTACTTCGGGAGGAAAGCTTATCTTC CAESTSGGKLIF TRAV5*01 TRAJ23*01 1.0 146.0 TGCAGCGTGGGGACAGGGGGAACTAATGAAAAACTGTTTTTT CSVGTGGTNEKLFF TRBV29-1*01 TRBJ1-4*01 108.0 4745.0 CAESTSGGKLIF_CSVGTGGTNEKLFF 107 4554 EBV-BLMF1 EBV 0.75 2531 NEG 198 4356 10 EBV BLMF1 GLCTLVAML effector memory T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*02:01 B2M MHCI -859 chip0420_579157 10.95 9.22 Chip1 T1D_2 T1D TGCGCCAGCAGGATGGGGGCCGGGGATACGCAGTATTTT CASRMGAGDTQYF TRBV10-2*01 TRBJ2-3*01 22.0 1439.0 _CASRMGAGDTQYF 90 3107 EBV-BLMF1 EBV 0.54 2531 NEG 222 2885 10 EBV BLMF1 GLCTLVAML effector memory T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*02:01 B2M MHCI -860 chip0420_109424 11.72 7.02 Chip1 T1D_2 T1D TGCAGCGTTGACCAAAGGACAGGGCAAAAGAAGAACTATGGCTACACCTTC CSVDQRTGQKKNYGYTF TRBV29-1*01 TRBJ1-2*01 41.0 2037.0 _CSVDQRTGQKKNYGYTF 40 3567 EBV-BLMF1 EBV 0.5 2531 NEG 196 3371 10 EBV BLMF1 GLCTLVAML effector memory T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*02:01 B2M MHCI -861 chip0420_691159 14.07 9.24 Chip1 T1D_2 T1D TGTGCAGAGAGTACTTCGGGAGGAACGCTTATCTTC CAESTSGGTLIF TRAV5*01 TRAJ23*01 25.0 2104.0 TGCAGCGTGGGGACAGGGGGAACTAATGAAAAACTGTTTTTT CSVGTGGTNEKLFF TRBV29-1*01 TRBJ1-4*01 220.0 9690.0 CAESTSGGTLIF_CSVGTGGTNEKLFF 4 4312 EBV-BLMF1 EBV 0.78 2531 NEG 206 4106 12 EBV BLMF1 GLCTLVAML effector T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*02:01 B2M MHCI -862 chip0420_391772 10.92 6.68 Chip1 T1D_2 T1D TGTGCCGTGAAGGACACCGACAAGCTCATCTTT CAVKDTDKLIF TRAV8-1*01 TRAJ34*01 8.0 619.0 TGTGCCTGGGGTGTACAGCTAGCGGGAGTAGACGAGCAGTACTTC CAWGVQLAGVDEQYF TRBV30*01 TRBJ2-7*01 14.0 531.0 CAVKDTDKLIF_CAWGVQLAGVDEQYF 2 6108 EBV-BRLF1 EBV 0.72 1264 EBV-BRLF1 225 5883 10 EBV BRLF1 YVLDHLIVV effector memory T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*02:01 B2M MHCI -863 chip0420_240881 10.13 9.95 Chip1 T1D_1 T1D TGCAGCGTCGGGACGGGGGGGACTAATGAAAAACTGTTTTTT CSVGTGGTNEKLFF TRBV29-1*01 TRBJ1-4*01 43.0 2044.0 _CSVGTGGTNEKLFF 638 4922 EBV-BLMF1 EBV 0.55 2531 NEG 175 4747 9 EBV BLMF1 GLCTLVAML effector memory T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*02:01 B2M MHCI -864 chip0420_716975 13.17 8.25 Chip1 T1D_2 T1D TGTGCCGTGAAGGACACAGGCAAACTAATCTTT CAVKDTGKLIF TRAV8-1*01 TRAJ37*01 22.0 2145.0 CAVKDTGKLIF_ 1 2587 EBV-BRLF1 EBV 0.74 1264 EBV-BRLF1 187 2400 10 EBV BRLF1 YVLDHLIVV effector memory T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*02:01 B2M MHCI -865 chip0420_154271 13.0 6.8 Chip1 T1D_2 T1D TGCGCCAGCAGAGCGGGAGCCGGGGATACGCAGTATTTT CASRAGAGDTQYF TRBV10-2*01 TRBJ2-3*01 38.0 2094.0 _CASRAGAGDTQYF 59 3753 EBV-BLMF1 EBV 0.92 2531 NEG 225 3528 10 EBV BLMF1 GLCTLVAML effector memory T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*02:01 B2M MHCI -866 chip0420_643289 -1.82 9.31 Chip1 T1D_2 T1D TGTGCCAGCAGCGTAGATAACGGGGCTGAAGCTTTCTTT CASSVDNGAEAFF TRBV9*01 TRBJ1-1*01 31.0 1465.0 _CASSVDNGAEAFF 2 5059 PGT-178 PGT 0.87 1480 PGT-178 175 4884 3 HomoSapiens PGT LLAGIGTVPI Naive T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*02:01 B2M MHCI -867 chip0420_831093 -3.39 12.52 Chip1 T1D_2 T1D TGTGTGGCCGCGCTATCTAACTTTGGAAATGAGAAATTAACCTTT CVAALSNFGNEKLTF TRAV12-1*01 TRAJ48*01 45.0 2002.0 TGTGCCAGCCGCCGTAGACGGGGCCCTGAACACTGAAGCTTTCTTT CASRRRRgg??ccLNTEAFF TRBV3-1*01 TRBJ1-1*01 9.0 329.0 CVAALSNFGNEKLTF_CASRRRRgg??ccLNTEAFF 1 2727 PGT-178 PGT 0.87 1480 PGT-178 190 2537 1 HomoSapiens PGT LLAGIGTVPI Naive T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*02:01 B2M MHCI -868 chip0420_678668 9.24 8.15 Chip1 T1D_2 T1D TGTGCAGAGAGTACTTCGGGAGGCTCGCTTATCTTC CAESTSGGSLIF TRAV5*01 TRAJ23*01 5.0 208.0 TGCAGCGTGGGGACAGGGGGAACTAATGAAAAACTGTTTTTT CSVGTGGTNEKLFF TRBV29-1*01 TRBJ1-4*01 41.0 2184.0 CAESTSGGSLIF_CSVGTGGTNEKLFF 1 3920 EBV-BLMF1 EBV 0.71 2531 NEG 196 3724 8 EBV BLMF1 GLCTLVAML effector memory T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*02:01 B2M MHCI -869 chip0420_322557 9.76 6.81 Chip1 tet_neg CTGTGCCGGTAGTCTCGGACTGAACTACGAGCAGTACTTC LCR*SRac??tgNYEQYF TRBV19*01 TRBJ2-7*01 6.0 348.0 _LCR*SRac??tgNYEQYF 1 10179 GP160-814-822 HIV 0.67 7 NEG 180 9999 10 HIV-1 GP160 LLNATDIAV effector memory T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*02:01 B2M MHCI -870 chip0420_419807 11.44 10.38 Chip1 T1D_1 T1D TGTGCTTATAGGAGCCCGCCCTCCTCCGAAAAGCTGGTCTTT CAYRSPPSSEKLVF TRAV38-2/DV8*01 TRAJ57*01 1.0 20.0 TGTGCCAGCAGTGACGGTCGGGTCCACCCGGGGACCCAGTACTTC CASSDGRVHPGTQYF TRBV2*01 TRBJ2-5*01 29.0 1442.0 CAYRSPPSSEKLVF_CASSDGRVHPGTQYF 1 3991 EBV-BLMF1 EBV 0.57 2531 NEG 196 3795 9 EBV BLMF1 GLCTLVAML effector memory T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*02:01 B2M MHCI -871 chip0420_243364 11.75 7.04 Chip1 T1D_1 T1D TGTGCTGTGGTCTCAAATTCCGGGTATGCACTCAACTTC CAVVSNSGYALNF TRAV21*01 TRAJ41*01 26.0 1370.0 CAVVSNSGYALNF_ 4 4510 EBV-BLMF1 EBV 0.5 2531 NEG 208 4302 10 EBV BLMF1 GLCTLVAML effector memory T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*02:01 B2M MHCI -872 chip0420_647765 9.69 11.06 Chip1 T1D_2 T1D TGCAGCGTGGGGACAGGGGGAACTAATGAAAAACTGTTTTTT CSVGTGGTNEKLFF TRBV29-1*01 TRBJ1-4*01 31.0 1736.0 _CSVGTGGTNEKLFF 638 3203 EBV-BLMF1 EBV 0.44 2531 NEG 201 3002 9 EBV BLMF1 GLCTLVAML effector memory T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*02:01 B2M MHCI -873 chip0420_867138 15.06 12.48 Chip1 T1D_2 T1D TGCAGCGTGGGGACAGGGGGAACTAATGAAAAACTGTTTTTT CSVGTGGTNEKLFF TRBV29-1*01 TRBJ1-4*01 48.0 1574.0 _CSVGTGGTNEKLFF 638 1888 EBV-BLMF1 EBV 0.75 2531 NEG 197 1691 12 EBV BLMF1 GLCTLVAML effector T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*02:01 B2M MHCI -874 chip0420_227285 14.1 12.18 Chip1 T1D_2 T1D _ 6746 2129 EBV-BLMF1 EBV 0.5 2531 NEG 189 1940 12 EBV BLMF1 GLCTLVAML effector T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*02:01 B2M MHCI -875 chip0420_37686 5.83 13.17 Chip1 T1D_1 T1D TGTGGCACTCCAGAGAATGACAGCTGGGGGCAATTGCAGTTT CGTPENDSWGQLQF TRAV30*01 TRAJ24*01 7.0 516.0 CGTPENDSWGQLQF_ 1 5533 M1 FLU 0.79 1250 M1 204 5329 7 InfluenzaA M1 GILGFVFTL transitional T cells between effector and memory populations PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*02:01 B2M MHCI -876 chip0420_680812 15.56 10.01 Chip1 T1D_2 T1D TGTGCCAGCAGCAGAAGGACCCTAAACTCTGGGGCCAACGTCCTGACTTTC CASSRRTLNSGANVLTF TRBV13*01 TRBJ2-6*01 7.0 251.0 _CASSRRTLNSGANVLTF 9 3232 EBV-BRLF1 EBV 0.94 1264 EBV-BRLF1 212 3020 12 EBV BRLF1 YVLDHLIVV effector T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*02:01 B2M MHCI -877 chip0420_471477 12.17 7.79 Chip1 T1D_1 T1D TGTGCCAGCAGTTCCGGAGGGAACGTGGATACGCAGTATTTT CASSSGGNVDTQYF TRBV7-3*01 TRBJ2-3*01 23.0 1131.0 _CASSSGGNVDTQYF 47 2972 EBV-BLMF1 EBV 0.44 2531 NEG 206 2766 10 EBV BLMF1 GLCTLVAML effector memory T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*02:01 B2M MHCI -878 chip0420_103970 9.58 8.03 Chip1 T1D_1 T1D TGCAGCGTCGGCTCCAGGGGAACTAATGAAAAACTGTTTTTT CSVGSRGTNEKLFF TRBV29-1*01 TRBJ1-4*01 44.0 2310.0 _CSVGSRGTNEKLFF 283 3422 EBV-BLMF1 EBV 0.56 2531 NEG 212 3210 8 EBV BLMF1 GLCTLVAML effector memory T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*02:01 B2M MHCI -879 chip0420_37086 -2.86 11.02 Chip1 T1D_1 T1D TGTGCCAGCAGCTTAGGGGATGAGCAGTTCTTC CASSLGDEQFF TRBV11-3*01 TRBJ2-1*01 9.0 630.0 _CASSLGDEQFF 1 4664 PGT-178 PGT 0.8 1480 PGT-178 193 4471 4 HomoSapiens PGT LLAGIGTVPI Naive T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*02:01 B2M MHCI -880 chip0420_488708 6.24 12.63 Chip1 T1D_1 T1D _ 6746 4758 ZNT8-16-24 ZNT8 0.66 39 ZNT8-16-24 176 4582 7 HomoSapiens ZNT8 KMYAFTLES transitional T cells between effector and memory populations PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*02:01 B2M MHCI -881 chip0420_816429 8.15 9.93 Chip1 T1D_2 T1D TGTGCCAGCAGCGTAGGAGGGGAAGCCTACGAGCAGTACTTC CASSVGGEAYEQYF TRBV9*01 TRBJ2-7*01 1.0 37.0 _CASSVGGEAYEQYF 2 4992 EBV-BLMF1 EBV 0.9 2531 NEG 201 4791 8 EBV BLMF1 GLCTLVAML effector memory T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*02:01 B2M MHCI -882 chip0420_545667 7.94 11.13 Chip1 T1D_2 T1D TGTGCCAGCAGCCCAGGGACGGGAGGGCACGAGCAGTACTTC CASSPGTGGHEQYF TRBV7-9*01 TRBJ2-7*01 40.0 2820.0 _CASSPGTGGHEQYF 1 4868 EBV-BLMF1 EBV 0.7 2531 NEG 201 4667 7 EBV BLMF1 GLCTLVAML transitional T cells between effector and memory populations PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*02:01 B2M MHCI -883 chip0420_438022 5.14 10.0 Chip1 T1D_1 T1D TGTGCCAGCAGCCCGGGGGACGCCCGTGGCGAGCAGTACTTC CASSPGDARGEQYF TRBV5-6*01 TRBJ2-7*01 18.0 1221.0 _CASSPGDARGEQYF 12 4580 EBV-LMP1-1 EBV 0.9 237 EBV-LMP1-1 184 4396 6 EBV LMP1 YLLEMLWRL central memory T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*02:01 B2M MHCI -884 chip0420_869973 -1.08 9.24 Chip1 T1D_1 T1D TGTGCAGGCGCTACGAGCAACTATCAGTTAATCTGG CAGATSNYQLIW TRAV27*01 TRAJ33*01 43.0 2622.0 TGTGCCAGCAGTTTAAACAGGGACACCTACGAGCAGTACTTC CASSLNRDTYEQYF TRBV12-3*01,TRBV12-4*01 TRBJ2-7*01 79.0 3754.0 CAGATSNYQLIW_CASSLNRDTYEQYF 1 5605 ZNT8-186-194 ZNT8 0.94 22 ZNT8-186-194 158 5447 4 HomoSapiens ZNT8 VAANIVLTV Naive T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*02:01 B2M MHCI -885 chip0420_268819 15.32 10.57 Chip1 T1D_1 T1D _ 6746 2417 EBV-BLMF1 EBV 0.76 2531 NEG 189 2228 12 EBV BLMF1 GLCTLVAML effector T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*02:01 B2M MHCI -886 chip0420_55233 9.48 10.51 Chip1 T1D_1 T1D TGTGCTGTGAATTCCGGGTATGCCCTCACCTTC CAVNSGYALTF TRAV3*01 TRAJ41*01 24.0 2059.0 TGCAGTGCCATAAATACATCCGGGACAGGGGGCTACGAGCAGTACTTC CSAINTSGTGGYEQYF TRBV20-1*01 TRBJ2-7*01 38.0 1967.0 CAVNSGYALTF_CSAINTSGTGGYEQYF 1 5176 HCVNS4B-1807-1816 HCV 1.0 74 NEG 194 4982 9 HCV NS4B LLFNILGGWV effector memory T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*02:01 B2M MHCI -887 chip0420_517318 11.59 7.03 Chip1 T1D_2 T1D TGCAGCGTGGGGACAGGGGGAACTAATGAAAAACTGTTTTTT CSVGTGGTNEKLFF TRBV29-1*01 TRBJ1-4*01 14.0 839.0 _CSVGTGGTNEKLFF 638 3151 EBV-BLMF1 EBV 0.86 2531 NEG 194 2957 10 EBV BLMF1 GLCTLVAML effector memory T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*02:01 B2M MHCI -888 chip0420_717849 13.21 8.18 Chip1 T1D_2 T1D TGTGCCTTAGGAGGACTGACCTTT CALGGLTF TRAV8-1*01 TRAJ22*01 28.0 2431.0 TGTGCCAGCAGCCCCTCGACTAGCGGGAGTGGGGAGACCCAGTACTTC CASSPSTSGSGETQYF TRBV3-1*01 TRBJ2-5*01 35.0 1385.0 CALGGLTF_CASSPSTSGSGETQYF 12 1916 EBV-BRLF1 EBV 1.0 1264 EBV-BRLF1 210 1706 10 EBV BRLF1 YVLDHLIVV effector memory T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*02:01 B2M MHCI -889 chip0420_735350 9.54 8.39 Chip1 T1D_1 T1D _ 6746 4119 EBV-BLMF1 EBV 0.5 2531 NEG 192 3927 8 EBV BLMF1 GLCTLVAML effector memory T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*02:01 B2M MHCI -890 chip0420_438173 12.13 6.24 Chip1 T1D_2 T1D TGTGGAGCTCCCCTTGTGCATTCCATGCGCTTT CGAPLVHSMRF TRAV34*01 TRAJ43*01 7.0 636.0 CGAPLVHSMRF_ 1 4532 EBV-BRLF1 EBV 0.84 1264 EBV-BRLF1 224 4308 10 EBV BRLF1 YVLDHLIVV effector memory T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*02:01 B2M MHCI -891 chip0420_249519 9.42 8.49 Chip1 T1D_2 T1D TGTGCCAGCAGTGCCCTATTGGGGGGCGCCTATGGCTACACCTTC CASSALLGGAYGYTF TRBV27*01 TRBJ1-2*01 31.0 1633.0 _CASSALLGGAYGYTF 6 4770 EBV-BRLF1 EBV 0.83 1264 NEG 176 4594 8 EBV BRLF1 YVLDHLIVV effector memory T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*02:01 B2M MHCI -892 chip0420_71794 11.23 7.54 Chip1 T1D_2 T1D TGCAGCGTGGGGACAGGGGGAACTAATGAAAAACTGTTTTTT CSVGTGGTNEKLFF TRBV29-1*01 TRBJ1-4*01 30.0 935.0 _CSVGTGGTNEKLFF 638 3898 EBV-BLMF1 EBV 0.57 2531 NEG 217 3681 10 EBV BLMF1 GLCTLVAML effector memory T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*02:01 B2M MHCI -893 chip0420_831003 14.09 11.14 Chip1 T1D_1 T1D _ 6746 2082 EBV-BLMF1 EBV 0.5 2531 NEG 182 1900 12 EBV BLMF1 GLCTLVAML effector T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*02:01 B2M MHCI -894 chip0420_482823 9.8 11.21 Chip1 T1D_1 T1D TGCAGCGTCGGCCCCAGGGGAACTAATGAAAAACTGTTTTTT CSVGPRGTNEKLFF TRBV29-1*01 TRBJ1-4*01 70.0 3645.0 _CSVGPRGTNEKLFF 1 3050 EBV-BLMF1 EBV 0.5 2531 NEG 193 2857 9 EBV BLMF1 GLCTLVAML effector memory T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*02:01 B2M MHCI -895 chip0420_758251 10.86 7.8 Chip1 T1D_2 T1D TGTGCTGTGAGAGACGACAGAGATGACAAGATCATCTTT CAVRDDRDDKIIF TRAV3*01 TRAJ30*01 17.0 1148.0 TGTGCCAGCAGCTTAAACGCGGGAGAGTGGTATGGCTACACCTTC CASSLNAGEWYGYTF TRBV11-2*01 TRBJ1-2*01 10.0 606.0 CAVRDDRDDKIIF_CASSLNAGEWYGYTF 2 2530 EBV-BLMF1 EBV 0.75 2531 NEG 209 2321 10 EBV BLMF1 GLCTLVAML effector memory T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*02:01 B2M MHCI -896 chip0420_429572 11.0 10.41 Chip1 T1D_1 T1D TGCAGCGTCGGCTCCAGGGGAACTAATGAAAAACTGTTTTTT CSVGSRGTNEKLFF TRBV29-1*01 TRBJ1-4*01 300.0 14973.0 _CSVGSRGTNEKLFF 283 3326 EBV-BLMF1 EBV 0.43 2531 NEG 177 3149 9 EBV BLMF1 GLCTLVAML effector memory T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*02:01 B2M MHCI -897 chip0420_732070 8.92 8.61 Chip1 T1D_1 T1D _ 6746 4730 EBV-BLMF1 EBV 0.93 2531 EBV-BLMF1 152 4578 8 EBV BLMF1 GLCTLVAML effector memory T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*02:01 B2M MHCI -898 chip0420_601312 6.08 13.34 Chip1 T1D_1 T1D TGTGCCAGTAGTGTCAGGGCAGGAGAGACCCAGTACTTC CASSVRAGETQYF TRBV19*01 TRBJ2-5*01 49.0 2528.0 _CASSVRAGETQYF 23 4291 M1 FLU 0.93 1250 M1 190 4101 7 InfluenzaA M1 GILGFVFTL transitional T cells between effector and memory populations PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*02:01 B2M MHCI -899 chip0420_806046 13.17 8.99 Chip1 T1D_1 T1D TGTGCTGTGAGTGATACCGGCCCGCACCTCCAAATACATCTTT CAVSDTG??cRTSKYIF TRAV8-6*01 TRAJ40*01 43.0 2141.0 TGTGCCAGCAGTCCGGACCAAACTAGCTCCTACAATGAGCAGTTCTTC CASSPDQTSSYNEQFF TRBV27*01 TRBJ2-1*01 31.0 1977.0 CAVSDTG??cRTSKYIF_CASSPDQTSSYNEQFF 1 2294 EBV-BRLF1 EBV 0.88 1264 EBV-BRLF1 180 2114 10 EBV BRLF1 YVLDHLIVV effector memory T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*02:01 B2M MHCI -900 chip0420_859344 9.02 9.87 Chip1 T1D_2 T1D TGTGCCAGCAGCCAATCCCCCGGGGGGCTAGCTTTCTTT CASSQSPGGLAFF TRBV14*01 TRBJ1-1*01 15.0 768.0 _CASSQSPGGLAFF 4 5376 EBV-BLMF1 EBV 0.67 2531 NEG 175 5201 8 EBV BLMF1 GLCTLVAML effector memory T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*02:01 B2M MHCI -901 chip0420_363597 -2.97 8.72 Chip1 T1D_1 T1D TGTGCCAGCAGCCAAGAGCAGGGAGCGTGGACTGAAGCTTTCTTT CASSQEQGAWTEAFF TRAV9-1*01 TRAJ40*01 5.0 43.0 TGTGCCAGCAGCCAAGAGCAGGGAGCGTGGACTGAAGCTTTCTTT CASSQEQGAWTEAFF TRBV3-1*01 TRBJ1-1*01 165.0 9029.0 CASSQEQGAWTEAFF_CASSQEQGAWTEAFF 1 5198 PGT-178 PGT 0.77 1480 PGT-178 195 5003 2 HomoSapiens PGT LLAGIGTVPI Naive T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*02:01 B2M MHCI -902 chip0420_765275 11.05 7.92 Chip1 T1D_2 T1D TGTGCCAGCAGCTCGGGACTAGTCGCCCCCGGGGAGCTGTTTTTT CASSSGLVAPGELFF TRBV2*01 TRBJ2-2*01 78.0 3489.0 _CASSSGLVAPGELFF 133 4627 EBV-BLMF1 EBV 0.8 2531 NEG 188 4439 10 EBV BLMF1 GLCTLVAML effector memory T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*02:01 B2M MHCI -903 chip0420_283197 8.03 9.72 Chip1 T1D_2 T1D _ 6746 3851 EBV-BRLF1 EBV 0.94 1264 EBV-BRLF1 218 3633 8 EBV BRLF1 YVLDHLIVV effector memory T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*02:01 B2M MHCI -904 chip0420_426510 5.77 11.44 Chip1 T1D_2 T1D _ 6746 5540 PGT-178 PGT 0.45 1480 PGT-178 193 5347 6 HomoSapiens PGT LLAGIGTVPI central memory T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*02:01 B2M MHCI -905 chip0420_466353 13.12 10.35 Chip1 T1D_1 T1D _ 6746 3817 EBV-BRLF1 EBV 0.93 1264 EBV-BRLF1 178 3639 9 EBV BRLF1 YVLDHLIVV effector memory T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*02:01 B2M MHCI -906 chip0420_853577 11.89 7.14 Chip1 T1D_2 T1D TGTGCCAGCAACTTAGCGGGGAACAATGAGCAGTTCTTC CASNLAGNNEQFF TRBV9*01 TRBJ2-1*01 40.0 2233.0 _CASNLAGNNEQFF 15 3529 EBV-BLMF1 EBV 0.62 2531 NEG 229 3300 10 EBV BLMF1 GLCTLVAML effector memory T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*02:01 B2M MHCI -907 chip0420_582966 -3.0 10.28 Chip1 T1D_1 T1D TGTGCCAGCAGCCCTACAGGGGAAGTAGCAGATACGCAGTATTTT CASSPTGEVADTQYF TRBV11-2*01 TRBJ2-3*01 29.0 1227.0 _CASSPTGEVADTQYF 1 4640 PGT-178 PGT 0.5 1480 PGT-178 204 4436 3 HomoSapiens PGT LLAGIGTVPI Naive T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*02:01 B2M MHCI -908 chip0420_563889 13.95 10.96 Chip1 T1D_2 T1D TGCAGCGTGGGGACAGGGGGAACTAATGAAAAACTGTTTTTT CSVGTGGTNEKLFF TRBV29-1*01 TRBJ1-4*01 100.0 5525.0 _CSVGTGGTNEKLFF 638 2659 EBV-BLMF1 EBV 0.83 2531 NEG 183 2476 12 EBV BLMF1 GLCTLVAML effector T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*02:01 B2M MHCI -909 chip0420_191753 9.44 9.84 Chip1 T1D_1 T1D TGTGCCATCAGTGAGGGGACGCTGAGCTCCTACAATGAGCAGTTCTTC CAISEGTLSSYNEQFF TRBV10-3*01 TRBJ2-1*01 25.0 1221.0 _CAISEGTLSSYNEQFF 7 5698 EBV-BRLF1 EBV 0.94 1264 EBV-BRLF1 211 5487 9 EBV BRLF1 YVLDHLIVV effector memory T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*02:01 B2M MHCI -910 chip0420_161704 -2.09 12.86 Chip1 T1D_1 T1D TGTGCAATGAGAGAGATCGATAACGACTACAAGCTCAGCTTT CAMREIDNDYKLSF TRAV14/DV4*01 TRAJ20*01 65.0 2175.0 CAMREIDNDYKLSF_ 1 4081 GP160-311-320 HIV 0.64 109 NEG 165 3916 1 HIV-1 GP160 RGPGRAFVTI Naive T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*02:01 B2M MHCI -911 chip0420_610257 11.72 6.36 Chip1 T1D_2 T1D TGCAGCGTGGGGACAGGGGGAACTAATGAAAAACTGTTTTTT CSVGTGGTNEKLFF TRBV29-1*01 TRBJ1-4*01 165.0 7250.0 _CSVGTGGTNEKLFF 638 3282 EBV-BLMF1 EBV 1.0 2531 NEG 214 3068 10 EBV BLMF1 GLCTLVAML effector memory T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*02:01 B2M MHCI -912 chip0420_485963 8.52 13.83 Chip1 T1D_1 T1D _ 6746 2874 M1 FLU 0.66 1250 M1 172 2702 11 InfluenzaA M1 GILGFVFTL effector T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*02:01 B2M MHCI -913 chip0420_127667 11.44 7.02 Chip1 T1D_2 T1D TGTGTGGTGAACGGCAGGGATAGCAGCTATAAATTGATCTTC CVVNGRDSSYKLIF TRAV12-1*01 TRAJ12*01 67.0 3089.0 TGTGCCAGCAGCTCGGGACTAGTCGCCCCCGGGGAGCTGTTTTTT CASSSGLVAPGELFF TRBV2*01 TRBJ2-2*01 76.0 5310.0 CVVNGRDSSYKLIF_CASSSGLVAPGELFF 98 5384 EBV-BLMF1 EBV 1.0 2531 NEG 179 5205 10 EBV BLMF1 GLCTLVAML effector memory T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*02:01 B2M MHCI -914 chip0420_860083 13.12 7.85 Chip1 T1D_2 T1D _ 6746 2169 EBV-BLMF1 EBV 1.0 2531 NEG 206 1963 10 EBV BLMF1 GLCTLVAML effector memory T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*02:01 B2M MHCI -915 chip0420_715120 14.02 10.05 Chip1 T1D_1 T1D TGTGCCAGTAGTCCCCACTTGGGTGCGGCGGCCGAGCAGTACTTC CASSPHLGAAAEQYF TRBV19*01 TRBJ2-7*01 36.0 1264.0 _CASSPHLGAAAEQYF 10 2528 EBV-BRLF1 EBV 0.75 1264 EBV-BRLF1 165 2363 12 EBV BRLF1 YVLDHLIVV effector T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*02:01 B2M MHCI -916 chip0420_501685 9.91 9.97 Chip1 T1D_1 T1D _ 6746 5391 EBV-BRLF1 EBV 0.94 1264 EBV-BRLF1 206 5185 9 EBV BRLF1 YVLDHLIVV effector memory T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*02:01 B2M MHCI -917 chip0420_537860 9.37 11.37 Chip1 T1D_2 T1D _ 6746 3391 EBV-BLMF1 EBV 0.9 2531 NEG 174 3217 9 EBV BLMF1 GLCTLVAML effector memory T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*02:01 B2M MHCI -918 chip0420_11973 7.29 9.45 Chip1 T1D_1 T1D TGTGCAATGAGAGAGGATAATGCAGGCAACATGCTCACCTTT CAMREDNAGNMLTF TRAV14/DV4*01 TRAJ39*01 3.0 248.0 CAMREDNAGNMLTF_ 5 10230 M1 FLU 0.4 1250 M1 183 10047 7 InfluenzaA M1 GILGFVFTL transitional T cells between effector and memory populations PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*02:01 B2M MHCI -919 chip0420_37701 13.68 9.36 Chip1 T1D_2 T1D TGTGCCTTAGGAGGACTGACCTTT CALGGLTF TRAV8-1*01 TRAJ22*01 23.0 2121.0 TGTGCCAGCAGCCCCTCGACTAGCGGGAGTGGGGAGACCCAGTACTTC CASSPSTSGSGETQYF TRBV3-1*01 TRBJ2-5*01 31.0 1995.0 CALGGLTF_CASSPSTSGSGETQYF 12 2438 EBV-BRLF1 EBV 0.92 1264 EBV-BRLF1 216 2222 12 EBV BRLF1 YVLDHLIVV effector T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*02:01 B2M MHCI -920 chip0420_647889 5.99 10.98 Chip1 T1D_2 T1D TGTGCCAGCAGTCCCGCCCTACGGTGGGAGACCCAGTACTTC CASSPALRWETQYF TRBV12-3*01,TRBV12-4*01 TRBJ2-5*01 58.0 2694.0 _CASSPALRWETQYF 1 7783 ZNT8-186-194 ZNT8 0.9 22 ZNT8-186-194 184 7599 6 HomoSapiens ZNT8 VAANIVLTV central memory T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*02:01 B2M MHCI -921 chip0420_542306 16.08 11.3 Chip1 T1D_2 T1D TGTGCCGTGAAGGACACCGACAAGCTCATCTTT CAVKDTDKLIF TRAV8-1*01 TRAJ34*01 31.0 2983.0 TGTGCCAGCAGCCTACAGGCCGCCAACTATGGCTACACCTTC CASSLQAANYGYTF TRBV3-1*01 TRBJ1-2*01 16.0 1273.0 CAVKDTDKLIF_CASSLQAANYGYTF 2 1896 EBV-BRLF1 EBV 0.93 1264 EBV-BRLF1 198 1698 12 EBV BRLF1 YVLDHLIVV effector T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*02:01 B2M MHCI -922 chip0420_238899 5.87 13.04 Chip1 T1D_1 T1D _ 6746 5178 M1 FLU 0.85 1250 M1 191 4987 7 InfluenzaA M1 GILGFVFTL transitional T cells between effector and memory populations PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*02:01 B2M MHCI -923 chip0420_519435 -0.34 6.55 Chip1 T1D_1 T1D TGTGCAGAGGACCCCGCGGGAGGAGGAAACAAACTCACCTTT CAEDPAGGGNKLTF TRAV13-2*01 TRAJ10*01 13.0 888.0 CAEDPAGGGNKLTF_ 1 8676 VPR-59-67 HIV 0.57 16 VPR-59-67 216 8460 3 HIV-1 VPR AIIRILQQL Naive T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*02:01 B2M MHCI -924 chip0420_636822 10.31 7.9 Chip1 T1D_2 T1D _ 6746 3624 EBV-BLMF1 EBV 0.89 2531 NEG 181 3443 10 EBV BLMF1 GLCTLVAML effector memory T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*02:01 B2M MHCI -925 chip0420_359921 9.25 10.2 Chip1 T1D_1 T1D TGCAGCGTCGGCTCCAGGGGAACTAATGAAAAACTGTTTTTT CSVGSRGTNEKLFF TRBV29-1*01 TRBJ1-4*01 65.0 3577.0 _CSVGSRGTNEKLFF 283 5324 EBV-BLMF1 EBV 0.6 2531 NEG 168 5156 8 EBV BLMF1 GLCTLVAML effector memory T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*02:01 B2M MHCI -926 chip0420_256641 -0.53 4.8 Chip1 T1D_1 T1D _ 6746 5240 HCVNS3-1406-1415 HCV 0.45 12 NEG 179 5061 5 HCV NS3 KLVALGINAV natural killer-like T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*02:01 B2M MHCI -927 chip0420_231505 -3.58 11.64 Chip1 T1D_1 T1D _ 6746 4092 PGT-178 PGT 0.7 1480 PGT-178 189 3903 1 HomoSapiens PGT LLAGIGTVPI Naive T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*02:01 B2M MHCI -928 chip0420_623365 -1.97 9.71 Chip1 T1D_1 T1D _ 6746 5673 PGT-178 PGT 0.7 1480 PGT-178 178 5495 3 HomoSapiens PGT LLAGIGTVPI Naive T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*02:01 B2M MHCI -929 chip0420_561765 -3.42 11.05 Chip1 T1D_2 T1D TGTGCCAGCAGCTTGAACAGGGTAAACACTGAAGCTTTCTTT CASSLNRVNTEAFF TRBV5-6*01 TRBJ1-1*01 32.0 1027.0 _CASSLNRVNTEAFF 1 3952 PGT-178 PGT 0.75 1480 PGT-178 178 3774 1 HomoSapiens PGT LLAGIGTVPI Naive T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*02:01 B2M MHCI -930 chip0420_116163 7.47 10.8 Chip1 T1D_2 T1D TGTGCCTGGGGCGACCAACTAGGGGCGGCCCGGGAGCTGTGTTTT CAWGDQLGAARELCF TRBV30*01 TRBJ2-2*01 5.0 620.0 _CAWGDQLGAARELCF 1 4328 EBV-BRLF1 EBV 1.0 1264 EBV-BRLF1 202 4126 7 EBV BRLF1 YVLDHLIVV transitional T cells between effector and memory populations PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*02:01 B2M MHCI -931 chip0420_219428 6.2 9.81 Chip1 T1D_1 T1D TGTGCCCGCAGTGTGCCGGGAGGTAACTATGGCTACACCTTC CARSVPGGNYGYTF TRBV6-1*01 TRBJ1-2*01 7.0 210.0 _CARSVPGGNYGYTF 1 7841 EBV-LMP2-FLY EBV 0.85 355 EBV-LMP2-FLY 181 7660 6 EBV LMP2 FLYALALLL central memory T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*02:01 B2M MHCI -932 chip0420_219400 9.4 9.79 Chip1 T1D_2 T1D TGCGCCAGCAGAGCGGGAGCCGGGGATACGCAGTATTTT CASRAGAGDTQYF TRBV10-2*01 TRBJ2-3*01 8.0 270.0 _CASRAGAGDTQYF 59 3480 EBV-BLMF1 EBV 0.6 2531 NEG 172 3308 8 EBV BLMF1 GLCTLVAML effector memory T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*02:01 B2M MHCI -933 chip0420_352055 15.62 10.11 Chip1 T1D_1 T1D TGTGCCAGTTGTCCCCACTTGGGGGCGGCGGCCGAGCAGTACTTC CASCPHLGAAAEQYF TRBV19*01 TRBJ2-7*01 6.0 225.0 _CASCPHLGAAAEQYF 1 2526 EBV-BRLF1 EBV 0.84 1264 EBV-BRLF1 184 2342 12 EBV BRLF1 YVLDHLIVV effector T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*02:01 B2M MHCI -934 chip0420_113802 10.85 6.6 Chip1 T1D_2 T1D TGTGTGGTGAACGGCAGGGATAGCAGCTATAAATTGATCTTC CVVNGRDSSYKLIF TRAV12-1*01 TRAJ12*01 59.0 2831.0 TGTGCCAGCAGCTCGGGACTAGTCGCCCCCGGGGAGCTGTTTTTT CASSSGLVAPGELFF TRBV2*01 TRBJ2-2*01 71.0 4394.0 CVVNGRDSSYKLIF_CASSSGLVAPGELFF 98 6426 EBV-BLMF1 EBV 0.71 2531 NEG 213 6213 10 EBV BLMF1 GLCTLVAML effector memory T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*02:01 B2M MHCI -935 chip0420_557519 8.33 9.36 Chip1 T1D_2 T1D TGCAGCGTGGGGACAGGGGGAACTAATGAAAAACTGTTTTTT CSVGTGGTNEKLFF TRBV29-1*01 TRBJ1-4*01 38.0 2012.0 _CSVGTGGTNEKLFF 638 5466 EBV-BLMF1 EBV 0.62 2531 NEG 195 5271 8 EBV BLMF1 GLCTLVAML effector memory T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*02:01 B2M MHCI -936 chip0420_221561 8.14 9.95 Chip1 T1D_2 T1D TGCGCCAGCAGAGCGGGAGCCGGGGATACGCAGTATTTT CASRAGAGDTQYF TRBV10-2*01 TRBJ2-3*01 66.0 2563.0 _CASRAGAGDTQYF 59 5325 EBV-BLMF1 EBV 1.0 2531 NEG 201 5124 8 EBV BLMF1 GLCTLVAML effector memory T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*02:01 B2M MHCI -937 chip0420_193849 12.77 13.25 Chip1 T1D_2 T1D TGCAGCGTTGGGGGCAGCTTCTATGGCTACACCTTC CSVGGSFYGYTF TRBV29-1*01 TRBJ1-2*01 121.0 6910.0 _CSVGGSFYGYTF 42 1976 EBV-BLMF1 EBV 0.8 2531 EBV-BLMF1 201 1775 11 EBV BLMF1 GLCTLVAML effector T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*02:01 B2M MHCI -938 chip0420_389494 14.88 10.92 Chip1 T1D_1 T1D TGTGCCATGAAGGACACCGACAAGCTCATCTTT CAMKDTDKLIF TRAV8-1*01 TRAJ34*01 29.0 2164.0 TGTGCCAGCAGCCACTTATTAGGGACAGGTTTTGGCTACACCTTC CASSHLLGTGFGYTF TRBV3-1*01 TRBJ1-2*01 47.0 2849.0 CAMKDTDKLIF_CASSHLLGTGFGYTF 1 2928 EBV-BRLF1 EBV 0.84 1264 EBV-BRLF1 196 2732 12 EBV BRLF1 YVLDHLIVV effector T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*02:01 B2M MHCI -939 chip0420_237421 13.82 9.22 Chip1 T1D_1 T1D _ 6746 3756 EBV-BRLF1 EBV 0.96 1264 EBV-BRLF1 180 3576 12 EBV BRLF1 YVLDHLIVV effector T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*02:01 B2M MHCI -940 chip0420_690412 11.76 7.36 Chip1 T1D_2 T1D TGCAGCGTGGGGACAGGGGGAACTAATGAAAAACTGTTTTTT CSVGTGGTNEKLFF TRBV29-1*01 TRBJ1-4*01 2.0 37.0 _CSVGTGGTNEKLFF 638 3640 EBV-BLMF1 EBV 0.6 2531 NEG 179 3461 10 EBV BLMF1 GLCTLVAML effector memory T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*02:01 B2M MHCI -941 chip0420_233743 7.99 14.09 Chip1 T1D_1 T1D TGTGCCAGTAGTATCATTGGGGGCCGGAGGGATGGCTACACCTTC CASSIIGGRRDGYTF TRBV19*01 TRBJ1-2*01 4.0 171.0 _CASSIIGGRRDGYTF 1 2530 M1 FLU 0.88 1250 NEG 178 2352 7 InfluenzaA M1 GILGFVFTL transitional T cells between effector and memory populations PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*02:01 B2M MHCI -942 chip0420_419245 11.96 7.68 Chip1 T1D_2 T1D TGTGTGGTGAACGGCAGGGATAGCAGCTATAAATTGATCTTC CVVNGRDSSYKLIF TRAV12-1*01 TRAJ12*01 49.0 3249.0 TGTGCCAGCAGCTCGGGACTAGTCGCCCCCGGGGAGCTGTTTTTT CASSSGLVAPGELFF TRBV2*01 TRBJ2-2*01 24.0 1308.0 CVVNGRDSSYKLIF_CASSSGLVAPGELFF 98 2981 EBV-BLMF1 EBV 0.52 2531 NEG 198 2783 10 EBV BLMF1 GLCTLVAML effector memory T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*02:01 B2M MHCI -943 chip0420_726458 11.41 7.09 Chip1 T1D_2 T1D TGCAGCGTGGGGACAGGGGGAACTAATGAAAAACTGTTTTTT CSVGTGGTNEKLFF TRBV29-1*01 TRBJ1-4*01 1.0 59.0 _CSVGTGGTNEKLFF 638 3462 EBV-BLMF1 EBV 1.0 2531 NEG 171 3291 10 EBV BLMF1 GLCTLVAML effector memory T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*02:01 B2M MHCI -944 chip0420_503129 -2.86 11.21 Chip1 T1D_1 T1D TGTGCCAGCAGCTTTAGCGACAATGAGCAGTTCTTC CASSFSDNEQFF TRBV7-9*01 TRBJ2-1*01 5.0 318.0 _CASSFSDNEQFF 1 3535 PGT-178 PGT 0.83 1480 PGT-178 170 3365 2 HomoSapiens PGT LLAGIGTVPI Naive T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*02:01 B2M MHCI -945 chip0420_63659 10.53 11.34 Chip1 T1D_1 T1D _ 6746 3129 EBV-BLMF1 EBV 0.82 2531 NEG 195 2934 9 EBV BLMF1 GLCTLVAML effector memory T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*02:01 B2M MHCI -946 chip0420_866005 -3.33 8.45 Chip1 T1D_1 T1D TGTGCCGTGACAACTGACAGCTGGGGGAAATTGCAGTTT CAVTTDSWGKLQF TRAV12-2*01 TRAJ24*01 4.0 475.0 TGTGCCAGCAGACCTCAGACAGGGACCACCTACGAGCAGTACTTC CASRPQTGTTYEQYF TRBV2*01 TRBJ2-7*01 20.0 1088.0 CAVTTDSWGKLQF_CASRPQTGTTYEQYF 1 5899 PGT-178 PGT 0.6 1480 PGT-178 223 5676 2 HomoSapiens PGT LLAGIGTVPI Naive T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*02:01 B2M MHCI -947 chip0420_620331 11.47 6.85 Chip1 T1D_2 T1D TGTGCAGCATACGCAGGCAACATGCTCACCTTT CAAYAGNMLTF TRAV29/DV5*01 TRAJ39*01 1.0 21.0 TGCGCCAGCAGGATGGGGGCCGGGGATACGCAGTATTTT CASRMGAGDTQYF TRBV10-2*01 TRBJ2-3*01 1.0 57.0 CAAYAGNMLTF_CASRMGAGDTQYF 21 3524 EBV-BLMF1 EBV 1.0 2531 NEG 201 3323 10 EBV BLMF1 GLCTLVAML effector memory T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*02:01 B2M MHCI -948 chip0420_214988 8.91 9.36 Chip1 T1D_2 T1D TGCAGCGTTGACCAAAGGACAGGGCAAAAGAAGAACTATGGCTACACCTTC CSVDQRTGQKKNYGYTF TRBV29-1*01 TRBJ1-2*01 84.0 4320.0 _CSVDQRTGQKKNYGYTF 40 4553 EBV-BLMF1 EBV 0.9 2531 NEG 194 4359 8 EBV BLMF1 GLCTLVAML effector memory T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*02:01 B2M MHCI -949 chip0420_565788 13.41 6.62 Chip1 T1D_2 T1D TGTGCTTCCCTAACCCCGGGGGCTTCCAAGATAATCTTT CASLTPGASKIIF TRAV8-6*01 TRAJ3*01 22.0 2058.0 TGTGCCAGCAGCTCGGGACTAGTCGCCCCCGGGGAGCTGTTTTTT CASSSGLVAPGELFF TRBV2*01 TRBJ2-2*01 54.0 3770.0 CASLTPGASKIIF_CASSSGLVAPGELFF 38 4245 EBV-BLMF1 EBV 0.83 2531 NEG 191 4054 10 EBV BLMF1 GLCTLVAML effector memory T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*02:01 B2M MHCI -950 chip0420_430917 6.52 12.56 Chip1 T1D_1 T1D TGTGCCAGTAGTCTCCGTTCCGCCTACGAGCAGTACTTC CASSLRSAYEQYF TRBV19*01 TRBJ2-7*01 27.0 1471.0 _CASSLRSAYEQYF 1 4627 M1 FLU 0.62 1250 M1 186 4441 7 InfluenzaA M1 GILGFVFTL transitional T cells between effector and memory populations PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*02:01 B2M MHCI -951 chip0420_178410 10.97 10.7 Chip1 T1D_1 T1D TGTGCCAGCAGCCCAGTTAGCGGGTCAACCTACGAGCAGTACTTC CASSPVSGSTYEQYF TRBV3-1*01 TRBJ2-7*01 50.0 2922.0 _CASSPVSGSTYEQYF 80 3526 EBV-BLMF1 EBV 0.94 2531 EBV-BLMF1 203 3323 9 EBV BLMF1 GLCTLVAML effector memory T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*02:01 B2M MHCI -952 chip0420_187309 8.8 8.82 Chip1 T1D_1 T1D TGTGCCAGCAGCCCAGTTAGCGGGTCAACCTACGAGCAGTACTTC CASSPVSGSTYEQYF TRBV3-1*01 TRBJ2-7*01 25.0 1597.0 _CASSPVSGSTYEQYF 80 3468 EBV-BLMF1 EBV 0.8 2531 NEG 185 3283 8 EBV BLMF1 GLCTLVAML effector memory T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*02:01 B2M MHCI -953 chip0420_852310 15.96 10.48 Chip1 T1D_2 T1D CGTGCCCTGAACACCGACAAGCTCATCTTT RALNTDKLIF TRAV8-1*01 TRAJ34*01 1.0 57.0 TGTGCCAGCGGCACTCTAGCGGGGGCTGGGCAGACCCAGTACTTC CASGTLAGAGQTQYF TRBV3-1*01 TRBJ2-5*01 4.0 566.0 RALNTDKLIF_CASGTLAGAGQTQYF 1 2322 EBV-BRLF1 EBV 0.85 1264 EBV-BRLF1 194 2128 12 EBV BRLF1 YVLDHLIVV effector T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*02:01 B2M MHCI -954 chip0420_581729 11.56 7.47 Chip1 T1D_1 T1D _ 6746 5343 EBV-BLMF1 EBV 0.8 2531 NEG 177 5166 10 EBV BLMF1 GLCTLVAML effector memory T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*02:01 B2M MHCI -955 chip0420_258451 8.97 10.6 Chip1 T1D_2 T1D TGTGCCGTGAAAGTGGATGGCCAGAAGCTGCTCTTT CAVKVDGQKLLF TRAV8-1*01 TRAJ16*01 1.0 15.0 TGTGCCTGGAGTGACCAACTAGGGGCGGCACGGGAGCTGTTTTTT CAWSDQLGAARELFF TRBV30*01 TRBJ2-2*01 23.0 1212.0 CAVKVDGQKLLF_CAWSDQLGAARELFF 2 4263 EBV-BRLF1 EBV 0.89 1264 EBV-BRLF1 208 4055 9 EBV BRLF1 YVLDHLIVV effector memory T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*02:01 B2M MHCI -956 chip0420_688648 5.78 12.5 Chip1 T1D_1 T1D TCTGCTGTGCGTGCTCGGGATGGCGGCTTCAACACTCTCTTT SAVRARDGGFNTLF TRAV8-4*01 TRAJ9*01 8.0 416.0 TGTGCCAGTAGTATAAATGGGGGCCGGAGGGATGGCTACACCTTC CASSINGGRRDGYTF TRBV19*01 TRBJ1-2*01 28.0 1635.0 SAVRARDGGFNTLF_CASSINGGRRDGYTF 1 4315 M1 FLU 0.62 1250 M1 200 4115 7 InfluenzaA M1 GILGFVFTL transitional T cells between effector and memory populations PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*02:01 B2M MHCI -957 chip0420_34879 6.03 12.61 Chip1 T1D_1 T1D _ 6746 5537 M1 FLU 0.93 1250 M1 207 5330 7 InfluenzaA M1 GILGFVFTL transitional T cells between effector and memory populations PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*02:01 B2M MHCI -958 chip0420_213376 11.5 8.04 Chip1 T1D_2 T1D TGCGCCAGCAGAGCGGGAGCCGGGGATACGCAGTATTTT CASRAGAGDTQYF TRBV10-2*01 TRBJ2-3*01 24.0 1166.0 _CASRAGAGDTQYF 59 2658 EBV-BLMF1 EBV 0.6 2531 NEG 195 2463 10 EBV BLMF1 GLCTLVAML effector memory T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*02:01 B2M MHCI -959 chip0420_372989 13.16 9.74 Chip1 T1D_1 T1D TGTGCCAGCAGCGTAGTAGGCAATGAGCAGTTCTTC CASSVVGNEQFF TRBV9*01 TRBJ2-1*01 61.0 4790.0 _CASSVVGNEQFF 5 3012 EBV-BLMF1 EBV 0.8 2531 EBV-BLMF1 171 2841 12 EBV BLMF1 GLCTLVAML effector T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*02:01 B2M MHCI -960 chip0420_99994 15.07 8.68 Chip1 T1D_1 T1D TGCGGCACAGAGGAACCTAACGACTACAAGCTCAGCTTT CGTEEPNDYKLSF TRAV30*01 TRAJ20*01 1.0 69.0 TGTGCCAGCAGCACGGGACAGCTATCGAACACCGGGGAGCTGTTTTTT CASSTGQLSNTGELFF TRBV9*01 TRBJ2-2*01 86.0 4221.0 CGTEEPNDYKLSF_CASSTGQLSNTGELFF 18 2231 EBV-BLMF1 EBV 0.92 2531 NEG 169 2062 12 EBV BLMF1 GLCTLVAML effector T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*02:01 B2M MHCI -961 chip0420_855007 5.61 11.41 Chip1 T1D_2 T1D _ 6746 5073 EBV-LMP2-FLY EBV 0.89 355 EBV-LMP2-FLY 170 4903 6 EBV LMP2 FLYALALLL central memory T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*02:01 B2M MHCI -962 chip0420_576500 10.04 10.46 Chip1 T1D_1 T1D TGTGCTGTCAGATTGGGATATGGTGGTGCTACAAACAAGCTCCTCTTT CAVRLGYGGATNKLLF TRAV41*01 TRAJ32*01 89.0 2008.0 CAVRLGYGGATNKLLF_ 1 3045 EBV-BLMF1 EBV 1.0 2531 NEG 171 2874 9 EBV BLMF1 GLCTLVAML effector memory T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*02:01 B2M MHCI -963 chip0420_255768 8.22 11.13 Chip1 T1D_2 T1D TGTGCAGCATACGCAGGCAACGTGCTCACCTTT CAAYAGNVLTF TRAV29/DV5*01 TRAJ39*01 20.0 1593.0 CAAYAGNVLTF_ 1 3719 EBV-BLMF1 EBV 0.62 2531 NEG 195 3524 7 EBV BLMF1 GLCTLVAML transitional T cells between effector and memory populations PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*02:01 B2M MHCI -964 chip0420_72645 9.67 8.49 Chip1 T1D_1 T1D TGCAGCGTCGGCTCCAGGGGAACTAATGAAAAACTGTTTTTT CSVGSRGTNEKLFF TRBV29-1*01 TRBJ1-4*01 113.0 6287.0 _CSVGSRGTNEKLFF 283 3650 EBV-BLMF1 EBV 0.55 2531 NEG 177 3473 8 EBV BLMF1 GLCTLVAML effector memory T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*02:01 B2M MHCI -965 chip0420_194568 -2.37 7.8 Chip1 T1D_1 T1D _ 6746 6095 CVB3-P3A CVB 0.86 77 CVB3-P3A 156 5939 2 CoxsackievirusB P3A GIIYIIYKL Naive T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*02:01 B2M MHCI -966 chip0420_179618 9.45 10.62 Chip1 T1D_2 T1D TGTGCCAGCAGCTACGGGACTAGCGGGAGAAGGGAGACCCAGTACTTC CASSYGTSGRRETQYF TRBV5-4*01 TRBJ2-5*01 51.0 2418.0 _CASSYGTSGRRETQYF 1 3774 EBV-BRLF1 EBV 1.0 1264 EBV-BRLF1 165 3609 9 EBV BRLF1 YVLDHLIVV effector memory T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*02:01 B2M MHCI -967 chip0420_565470 7.32 13.88 Chip1 T1D_1 T1D TGTGCCGTTTCGTTATGGTCAGAATTTTGTCTTT CAVSLtg??gtQNFVF TRAV13-1*01 TRAJ26*01 5.0 705.0 CAVSLtg??gtQNFVF_ 2 3339 M1 FLU 0.94 1250 M1 186 3153 7 InfluenzaA M1 GILGFVFTL transitional T cells between effector and memory populations PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*02:01 B2M MHCI -968 chip0420_838037 8.5 13.9 Chip1 T1D_1 T1D TGTGCAGGAGCTTCGGGGTCTAGCAACACAGGCAAACTAATCTTT CAGASGSSNTGKLIF TRAV27*01 TRAJ37*01 4.0 437.0 CAGASGSSNTGKLIF_ 1 2176 M1 FLU 0.51 1250 M1 197 1979 11 InfluenzaA M1 GILGFVFTL effector T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*02:01 B2M MHCI -969 chip0420_315818 12.81 8.5 Chip1 T1D_2 T1D TGCGCCAGCAGGATGGGGGCCGGGGATACGCAGTATTTT CASRMGAGDTQYF TRBV10-2*01 TRBJ2-3*01 61.0 4819.0 _CASRMGAGDTQYF 90 2462 EBV-BLMF1 EBV 1.0 2531 NEG 228 2234 10 EBV BLMF1 GLCTLVAML effector memory T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*02:01 B2M MHCI -970 chip0420_687945 8.77 8.98 Chip1 T1D_1 T1D _ 6746 4236 EBV-BLMF1 EBV 0.83 2531 NEG 208 4028 8 EBV BLMF1 GLCTLVAML effector memory T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*02:01 B2M MHCI -971 chip0420_350898 9.47 9.92 Chip1 T1D_2 T1D TGTGCCTTAGGAGGACTGACCTTT CALGGLTF TRAV8-1*01 TRAJ22*01 1.0 13.0 TGTGCCAGCAGCCCCTCGACTAGCGGGAGTGGGGAGACCCAGTACTTC CASSPSTSGSGETQYF TRBV3-1*01 TRBJ2-5*01 13.0 631.0 CALGGLTF_CASSPSTSGSGETQYF 12 2808 EBV-BRLF1 EBV 0.93 1264 EBV-BRLF1 200 2608 8 EBV BRLF1 YVLDHLIVV effector memory T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*02:01 B2M MHCI -972 chip0420_350593 12.25 6.33 Chip1 T1D_2 T1D TGCAGCGTGGGGACAGGGGGAACTAATGAAAAACTGTTTTTT CSVGTGGTNEKLFF TRBV29-1*01 TRBJ1-4*01 97.0 4611.0 _CSVGTGGTNEKLFF 638 4830 EBV-BLMF1 EBV 0.83 2531 NEG 187 4643 10 EBV BLMF1 GLCTLVAML effector memory T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*02:01 B2M MHCI -973 chip0420_330521 15.5 9.36 Chip1 T1D_2 T1D TGTGTGGTGAACGGCAGGGATAGCAGCTATAAATTGATCTTC CVVNGRDSSYKLIF TRAV12-1*01 TRAJ12*01 59.0 3323.0 TGTGCCAGCAGCTCGGGACTAGTCGCCCCCGGGGAGCTGTTTTTT CASSSGLVAPGELFF TRBV2*01 TRBJ2-2*01 107.0 5549.0 CVVNGRDSSYKLIF_CASSSGLVAPGELFF 98 2711 EBV-BLMF1 EBV 0.75 2531 NEG 195 2516 12 EBV BLMF1 GLCTLVAML effector T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*02:01 B2M MHCI -974 chip0420_215697 14.31 11.65 Chip1 T1D_2 T1D TGTGCAGAGAGTACTTCGGGAGGAAAGCTTATCTTC CAESTSGGKLIF TRAV5*01 TRAJ23*01 3.0 370.0 TGCAGCGTGGGGACAGGGGGAACTAATGAAAAACTGTTTTTT CSVGTGGTNEKLFF TRBV29-1*01 TRBJ1-4*01 126.0 5687.0 CAESTSGGKLIF_CSVGTGGTNEKLFF 107 2126 EBV-BLMF1 EBV 0.57 2531 NEG 159 1967 12 EBV BLMF1 GLCTLVAML effector T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*02:01 B2M MHCI -975 chip0420_833183 12.19 8.89 Chip1 T1D_2 T1D TGTGCCAGCAGTGCCCTATTGGGGGGCGCCTATGGCTACACCTTC CASSALLGGAYGYTF TRBV27*01 TRBJ1-2*01 34.0 1932.0 _CASSALLGGAYGYTF 6 2361 EBV-BRLF1 EBV 0.7 1264 NEG 188 2173 10 EBV BRLF1 YVLDHLIVV effector memory T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*02:01 B2M MHCI -976 chip0420_39792 7.03 14.14 Chip1 T1D_2 T1D TGTGCCGTGCACGACTACAAGCTCAGCTTT CAVHDYKLSF TRAV12-2*01 TRAJ20*01 3.0 314.0 TGCAGCGTTGTCAGCCCGAACACTGAAGCTTTCTTT CSVVSPNTEAFF TRBV29-1*01 TRBJ1-1*01 72.0 5124.0 CAVHDYKLSF_CSVVSPNTEAFF 1 2763 PGT-178 PGT 0.42 1480 NEG 199 2564 7 HomoSapiens PGT LLAGIGTVPI transitional T cells between effector and memory populations PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*02:01 B2M MHCI -977 chip0420_684254 6.86 13.41 Chip1 T1D_1 T1D TGTGCCAGTAGTTTTGGCGCCGGGGAGCTGTTTTTT CASSFGAGELFF TRBV19*01 TRBJ2-2*01 2.0 110.0 _CASSFGAGELFF 5 3706 M1 FLU 0.91 1250 M1 187 3519 7 InfluenzaA M1 GILGFVFTL transitional T cells between effector and memory populations PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*02:01 B2M MHCI -978 chip0420_296113 11.78 8.68 Chip1 T1D_2 T1D TGTGCAGAGGATAACAATGCCAGACTCGTGTTT CAEDNNARLVF TRAV5*01 TRAJ31*01 3.0 25.0 TGCAGCGTTGACCAAAGGACAGGGCAAAAGAAGAACTATGGCTACACCTTC CSVDQRTGQKKNYGYTF TRBV29-1*01 TRBJ1-2*01 127.0 5881.0 CAEDNNARLVF_CSVDQRTGQKKNYGYTF 1 2841 EBV-BLMF1 EBV 1.0 2531 NEG 197 2644 10 EBV BLMF1 GLCTLVAML effector memory T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*02:01 B2M MHCI -979 chip0420_616289 11.19 10.2 Chip1 T1D_1 T1D TGTGCTCTCTATAACACCGACAAGCTCATCTTT CALYNTDKLIF TRAV9-2*01 TRAJ34*01 31.0 3243.0 TGTGCCAGCAGCCCAGTTAGCGGGTCAACCTACGAGCAGTACTTC CASSPVSGSTYEQYF TRBV3-1*01 TRBJ2-7*01 5.0 421.0 CALYNTDKLIF_CASSPVSGSTYEQYF 15 4734 EBV-BLMF1 EBV 0.89 2531 EBV-BLMF1 179 4555 9 EBV BLMF1 GLCTLVAML effector memory T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*02:01 B2M MHCI -980 chip0420_308427 13.06 7.87 Chip1 T1D_2 T1D _ 6746 2277 EBV-BLMF1 EBV 0.71 2531 EBV-BLMF1 196 2081 10 EBV BLMF1 GLCTLVAML effector memory T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*02:01 B2M MHCI -981 chip0420_217617 13.9 8.23 Chip1 T1D_1 T1D TGCAGCGTCGGCTCCAGGGGAACTAATGAAAAACTGTTTTTT CSVGSRGTNEKLFF TRBV29-1*01 TRBJ1-4*01 53.0 2989.0 _CSVGSRGTNEKLFF 283 3106 EBV-BLMF1 EBV 0.82 2531 NEG 199 2907 10 EBV BLMF1 GLCTLVAML effector memory T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*02:01 B2M MHCI -982 chip0420_498728 9.29 9.8 Chip1 T1D_1 T1D _ 6746 4258 EBV-BLMF1 EBV 0.48 2531 NEG 175 4083 8 EBV BLMF1 GLCTLVAML effector memory T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*02:01 B2M MHCI -983 chip0420_878662 6.76 11.55 Chip1 T1D_2 T1D TATGCAGAGAACGCCTGGGGCTTACCAGAACCGTACCTTT YAENAWgg??ctYQNRTF TRAV5*01 TRAJ13*01 17.0 1562.0 TGCAGCGTGGGGACAGGGGGAACTAATGAAAAACTGTTTTTT CSVGTGGTNEKLFF TRBV29-1*01 TRBJ1-4*01 134.0 7063.0 YAENAWgg??ctYQNRTF_CSVGTGGTNEKLFF 1 3919 EBV-BLMF1 EBV 0.4 2531 NEG 162 3757 7 EBV BLMF1 GLCTLVAML transitional T cells between effector and memory populations PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*02:01 B2M MHCI -984 chip0420_628574 6.05 13.31 Chip1 T1D_1 T1D TGTGCCAGTAGTACCGGGCAGCCCCAGCATTTT CASSTGQPQHF TRBV19*01 TRBJ1-5*01 48.0 3008.0 _CASSTGQPQHF 3 3899 M1 FLU 0.75 1250 M1 175 3724 7 InfluenzaA M1 GILGFVFTL transitional T cells between effector and memory populations PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*02:01 B2M MHCI -985 chip0420_625039 9.03 8.49 Chip1 T1D_1 T1D TGCAGTGCTAGAGACGGGACAGGGAATGGCTACACCTTC CSARDGTGNGYTF TRBV20-1*01 TRBJ1-2*01 84.0 3997.0 _CSARDGTGNGYTF 14 7876 EBV-BLMF1 EBV 0.91 2531 EBV-BLMF1 213 7663 8 EBV BLMF1 GLCTLVAML effector memory T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*02:01 B2M MHCI -986 chip0420_727670 14.62 10.68 Chip1 T1D_1 T1D TGTGCCAGCAGCCAAAGCCCGGGTGGTACGCAGCATTTT CASSQSPGGTQHF TRBV14*01 TRBJ2-3*01 2.0 15.0 _CASSQSPGGTQHF 1 3084 EBV-BLMF1 EBV 0.83 2531 NEG 162 2922 12 EBV BLMF1 GLCTLVAML effector T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*02:01 B2M MHCI -987 chip0420_356796 10.24 6.96 Chip1 T1D_2 T1D TGTGCCAGCAGCAGAAGGACCCTAAACTCTGGGGCCAACGTCCTGACTTTC CASSRRTLNSGANVLTF TRBV13*01 TRBJ2-6*01 4.0 144.0 _CASSRRTLNSGANVLTF 9 4381 EBV-BRLF1 EBV 0.83 1264 EBV-BRLF1 186 4195 10 EBV BRLF1 YVLDHLIVV effector memory T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*02:01 B2M MHCI -988 chip0420_812025 10.15 9.99 Chip1 T1D_2 T1D TGCAGCGTTGGGGGCAGCTTCTATGGCTACACCTTC CSVGGSFYGYTF TRBV29-1*01 TRBJ1-2*01 109.0 8913.0 _CSVGGSFYGYTF 42 3391 EBV-BLMF1 EBV 0.73 2531 NEG 165 3226 9 EBV BLMF1 GLCTLVAML effector memory T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*02:01 B2M MHCI -989 chip0420_200363 5.1 11.89 Chip1 T1D_2 T1D TGTGCCCTAGGGGAGGATAGCAGCTATAAATTGATCTTC CALGEDSSYKLIF TRAV1-2*01 TRAJ12*01 29.0 2145.0 TGTGCCAGCAGCGCCAGACAGGGAGGGCATGAGACCCAGTACTTC CASSARQGGHETQYF TRBV7-9*01 TRBJ2-5*01 27.0 1638.0 CALGEDSSYKLIF_CASSARQGGHETQYF 1 3064 ADH-79-88 ADH 0.75 15 NEG 153 2911 6 HomoSapiens ADH RQFGPDWIVA central memory T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*02:01 B2M MHCI -990 chip0420_272763 -2.35 7.64 Chip1 T1D_1 T1D _ 6746 5929 M1 FLU 1.0 1250 NEG 177 5752 2 InfluenzaA M1 GILGFVFTL Naive T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*02:01 B2M MHCI -991 chip0420_239616 5.77 9.39 Chip1 T1D_2 T1D TGTGCTGCGCTGATGCATAGCAACTATCAGTTAATCTGG CAALMHSNYQLIW TRAV21*01 TRAJ33*01 7.0 314.0 TGCGCCAGAAGCGAGGACGGTATGAACACTGAAGCTTTCTTT CARSEDGMNTEAFF TRBV10-2*01 TRBJ1-1*01 35.0 1699.0 CAALMHSNYQLIW_CARSEDGMNTEAFF 1 3480 EBV-LMP2A EBV 0.94 700 EBV-LMP2A 171 3309 6 EBV LMP2A CLGGLLTMV central memory T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*02:01 B2M MHCI -992 chip0420_653544 -2.81 11.12 Chip1 T1D_2 T1D TGTGTGGTGAACATAGGGAAGGGGTATTATGGAGGAAGCCAAGGAAATCTCATCTTT CVVNIGKGYYGGSQGNLIF TRAV12-1*01 TRAJ42*01 61.0 1994.0 CVVNIGKGYYGGSQGNLIF_ 1 3583 PREINS-101-109 INS 0.83 3 PREINS-101-109 189 3394 3 HomoSapiens PREINS SLYQLENYC Naive T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*02:01 B2M MHCI -993 chip0420_139020 11.69 7.18 Chip1 T1D_1 T1D TGCAGCGTCGGCTCCAGGGGAACTAATGAAAAACTGTTTTTT CSVGSRGTNEKLFF TRBV29-1*01 TRBJ1-4*01 128.0 6614.0 _CSVGSRGTNEKLFF 283 3237 EBV-BLMF1 EBV 0.75 2531 NEG 192 3045 10 EBV BLMF1 GLCTLVAML effector memory T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*02:01 B2M MHCI -994 chip0420_352299 10.76 6.72 Chip1 tet_neg TGTGCTGTGGTTCCCTCAGGAACCTACAAATACATCTTT CAVVPSGTYKYIF TRAV8-3*01 TRAJ40*01 1.0 21.0 TGTGCAGCAACGAGGCAACATGCTCACCTTT CAATR??cNMLTF TRAV23/DV6*01 TRAJ39*01 1.0 107.0 0.5 CAVVPSGTYKYIF_ 1 3662 EBV-BLMF1 EBV 0.5 2531 NEG 190 3472 10 EBV BLMF1 GLCTLVAML effector memory T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*02:01 B2M MHCI -995 chip0420_41857 14.25 10.46 Chip1 T1D_2 T1D TGTGCCAGCGGCACTCTAGCGGGGGCTGGGCAGACCCAGTACTTC CASGTLAGAGQTQYF TRBV3-1*01 TRBJ2-5*01 53.0 3167.0 _CASGTLAGAGQTQYF 5 2543 EBV-BRLF1 EBV 1.0 1264 NEG 215 2328 12 EBV BRLF1 YVLDHLIVV effector T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*02:01 B2M MHCI -996 chip0420_526594 5.11 12.28 Chip1 T1D_2 T1D TGTGCTCCCCTTTCGTGGACTGCAGGCAACAAGCTAACTTTT CAPLSWTAGNKLTF TRAV19*01 TRAJ17*01 25.0 2195.0 CAPLSWTAGNKLTF_ 1 4428 PREINS-34-42 INS 0.73 9 NEG 180 4248 6 HomoSapiens PREINS HLVEALYLV central memory T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*02:01 B2M MHCI -997 chip0420_836122 10.81 10.87 Chip1 T1D_2 T1D TGCAGCGTTGACCAAAGGACAGGGCAAAAGAAGAACTATGGCTACACCTTC CSVDQRTGQKKNYGYTF TRBV29-1*01 TRBJ1-2*01 57.0 2248.0 _CSVDQRTGQKKNYGYTF 40 3258 EBV-BLMF1 EBV 0.71 2531 NEG 203 3055 9 EBV BLMF1 GLCTLVAML effector memory T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*02:01 B2M MHCI -998 chip0420_197572 9.68 10.99 Chip1 T1D_1 T1D TGCAGCGTCGGCTCCAGGGGAACTAATGAAAAACTGTTTTTT CSVGSRGTNEKLFF TRBV29-1*01 TRBJ1-4*01 23.0 1141.0 _CSVGSRGTNEKLFF 283 4910 EBV-BLMF1 EBV 0.47 2531 NEG 178 4732 9 EBV BLMF1 GLCTLVAML effector memory T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*02:01 B2M MHCI -999 chip0420_108866 6.3 12.57 Chip1 T1D_1 T1D TGTGCCAGTAGTATAAGATCCACAGATACGCAGTATTTT CASSIRSTDTQYF TRBV19*01 TRBJ2-3*01 20.0 1315.0 _CASSIRSTDTQYF 6 5600 M1 FLU 0.82 1250 M1 187 5413 7 InfluenzaA M1 GILGFVFTL transitional T cells between effector and memory populations PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*02:01 B2M MHCI -1000 chip0420_254863 6.04 13.69 Chip1 T1D_1 T1D TGTGCTGTGGGTGGTCGGGCTGGCGGCTTCAAAACTATCTTT CAVGGRAGGFKTIF TRAV8-4*01 TRAJ9*01 28.0 716.0 TGTGCCCGTCGTATCAATGGGGGCCGGAGGGATGGCTACACCTTC CARRINGGRRDGYTF TRBV19*01 TRBJ1-2*01 50.0 1236.0 CAVGGRAGGFKTIF_CARRINGGRRDGYTF 1 4067 M1 FLU 0.79 1250 M1 182 3885 7 InfluenzaA M1 GILGFVFTL transitional T cells between effector and memory populations PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*02:01 B2M MHCI -1001 chip0420_34692 14.3 9.7 Chip1 T1D_2 T1D TGTGCAGAGAGTACTTCGGGAGGAAAGCTTATCTTC CAESTSGGKLIF TRAV5*01 TRAJ23*01 32.0 2197.0 TGCAGCGTGGGGACAGGGGGAACTAATGAAAAACTGTTTTTT CSVGTGGTNEKLFF TRBV29-1*01 TRBJ1-4*01 274.0 10227.0 CAESTSGGKLIF_CSVGTGGTNEKLFF 107 4629 EBV-BLMF1 EBV 1.0 2531 NEG 169 4460 12 EBV BLMF1 GLCTLVAML effector T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*02:01 B2M MHCI -1002 chip0420_26761 13.81 9.77 Chip1 T1D_2 T1D _ 6746 2716 EBV-BLMF1 EBV 0.57 2531 NEG 186 2530 12 EBV BLMF1 GLCTLVAML effector T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*02:01 B2M MHCI -1003 chip0420_498053 -2.73 9.22 Chip1 T1D_1 T1D TGTGCCAGCAGCCATGGACAGAGATTCCCTGGGGCCAACGTCCTGACTTTC CASSHGQRFPGANVLTF TRBV3-1*01 TRBJ2-6*01 106.0 4190.0 _CASSHGQRFPGANVLTF 1 6991 POL-334-342 HIV 0.81 12 POL-334-342 161 6830 2 HIV-1 POL VIYQYMDDL Naive T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*02:01 B2M MHCI -1004 chip0420_409127 13.86 11.88 Chip1 T1D_1 T1D TGTGCCACCCAACAGGGGAGGGACAGTCAGCCCCAGCATTTT CATQQGRDSQPQHF TRBV28*01 TRBJ1-5*01 27.0 1242.0 _CATQQGRDSQPQHF 52 1545 EBV-BLMF1 EBV 0.89 2531 NEG 174 1371 12 EBV BLMF1 GLCTLVAML effector T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*02:01 B2M MHCI -1005 chip0420_148161 8.63 10.3 Chip1 T1D_2 T1D _ 6746 4306 EBV-BLMF1 EBV 0.62 2531 NEG 177 4129 8 EBV BLMF1 GLCTLVAML effector memory T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*02:01 B2M MHCI -1006 chip0420_548258 11.77 12.22 Chip1 T1D_1 T1D TGTGCAGCGAATTATGGAGGAAGCCAAGGAAATCTCCTCTTT CAANYGGSQGNLLF TRAV25*01 TRAJ42*01 9.0 419.0 TGGGCCAGCCGTGCCGCTCGGGTCCACCCGGCGACCCAGTACTTC WASRAARVHPATQYF TRBV2*01 TRBJ2-5*01 2.0 252.0 CAANYGGSQGNLLF_WASRAARVHPATQYF 1 2667 EBV-BLMF1 EBV 0.75 2531 NEG 162 2505 11 EBV BLMF1 GLCTLVAML effector T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*02:01 B2M MHCI -1007 chip0420_818930 10.84 7.43 Chip1 T1D_2 T1D TGCGCCAGCAGTCATCAGGCCTCCGAGCAGTACTTC CASSHQASEQYF TRBV10-1*01 TRBJ2-7*01 25.0 1765.0 _CASSHQASEQYF 4 3300 EBV-BRLF1 EBV 0.89 1264 EBV-BRLF1 209 3091 10 EBV BRLF1 YVLDHLIVV effector memory T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*02:01 B2M MHCI -1008 chip0420_667247 10.84 10.63 Chip1 T1D_1 T1D TGTGCCACCCAACAGGGGCGGGACAGTCAGCCCCAGCATTTT CATQQGRDSQPQHF TRBV28*01 TRBJ1-5*01 3.0 77.0 _CATQQGRDSQPQHF 52 3512 EBV-BLMF1 EBV 1.0 2531 NEG 190 3322 9 EBV BLMF1 GLCTLVAML effector memory T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*02:01 B2M MHCI -1009 chip0420_334204 16.03 10.43 Chip1 T1D_2 T1D TGTGTGGTGAACGGCAGGGATAGCAGCTATAAATTGATCTTC CVVNGRDSSYKLIF TRAV12-1*01 TRAJ12*01 4.0 423.0 TGTGCCAGCAGTGCGGGACAGGTGGCCCCGGGCGAGCAGTACTTC CASSAGQVAPGEQYF TRBV2*01 TRBJ2-7*01 5.0 140.0 CVVNGRDSSYKLIF_CASSAGQVAPGEQYF 1 2367 EBV-BLMF1 EBV 0.86 2531 NEG 200 2167 12 EBV BLMF1 GLCTLVAML effector T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*02:01 B2M MHCI -1010 chip0420_805710 13.3 13.75 Chip1 T1D_2 T1D _ 6746 847 EBV-BRLF1 EBV 0.89 1264 NEG 188 659 11 EBV BRLF1 YVLDHLIVV effector T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*02:01 B2M MHCI -1011 chip0420_790843 -3.56 8.54 Chip1 T1D_2 T1D TGTGCCAGCAGCTCCGGGACAGATACCTACGAGCAGTACTTC CASSSGTDTYEQYF TRBV27*01 TRBJ2-7*01 18.0 979.0 _CASSSGTDTYEQYF 1 5018 PGT-178 PGT 0.76 1480 PGT-178 176 4842 2 HomoSapiens PGT LLAGIGTVPI Naive T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*02:01 B2M MHCI -1012 chip0420_625701 11.35 8.47 Chip1 T1D_2 T1D TGTGCCCGCCGTGCCCTATTGGGGCGCGCCTATGGCTACACCTCC CARRALLGRAYGYTS TRBV27*01 TRBJ1-2*01 3.0 217.0 _CARRALLGRAYGYTS 1 3894 EBV-BRLF1 EBV 0.92 1264 NEG 175 3719 10 EBV BRLF1 YVLDHLIVV effector memory T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*02:01 B2M MHCI -1013 chip0420_455410 6.18 13.08 Chip1 T1D_1 T1D TGTGCTGTGAGTGATCGGGATGGCGGCTTCGAAACTATCTTT CAVSDRDGGFETIF TRAV8-4*01 TRAJ9*01 42.0 2066.0 CAVSDRDGGFETIF_ 1 4725 M1 FLU 0.84 1250 M1 167 4558 7 InfluenzaA M1 GILGFVFTL transitional T cells between effector and memory populations PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*02:01 B2M MHCI -1014 chip0420_498652 -3.7 10.85 Chip1 T1D_1 T1D TGTGCAATGAGCATATCTAACTTTGGAAATGAGAAATTAACCTTT CAMSISNFGNEKLTF TRAV12-3*01 TRAJ48*01 73.0 2064.0 TGTGCCACCAGTGATTTCCGACCGGGACCGCGTGTTTCCGGGGAGCTGTTTTTT CATSDFRPGPRVSGELFF TRBV24-1*01 TRBJ2-2*01 67.0 3011.0 CAMSISNFGNEKLTF_CATSDFRPGPRVSGELFF 1 5513 PGT-178 PGT 0.64 1480 PGT-178 173 5340 2 HomoSapiens PGT LLAGIGTVPI Naive T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*02:01 B2M MHCI -1015 chip0420_203002 -2.23 9.05 Chip1 T1D_1 T1D _ 6746 6822 PGT-178 PGT 0.78 1480 PGT-178 197 6625 3 HomoSapiens PGT LLAGIGTVPI Naive T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*02:01 B2M MHCI -1016 chip0420_47477 13.56 10.35 Chip1 T1D_2 T1D TGTGCCGTGAAGGACACCGACAAGCTCATCTTT CAVKDTDKLIF TRAV8-1*01 TRAJ34*01 28.0 2551.0 TGTGCCTGGAGTGTACAGCTAGCGGGAGTAGACGAGCAGTACTTC CAWSVQLAGVDEQYF TRBV30*01 TRBJ2-7*01 2.0 97.0 CAVKDTDKLIF_CAWSVQLAGVDEQYF 9 3067 EBV-BRLF1 EBV 0.86 1264 EBV-BRLF1 204 2863 12 EBV BRLF1 YVLDHLIVV effector T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*02:01 B2M MHCI -1017 chip0420_399428 11.93 8.4 Chip1 T1D_2 T1D TGCAGCGTGGGGACAGGGGGAACTAATGAAAAACTGTTTTTT CSVGTGGTNEKLFF TRBV29-1*01 TRBJ1-4*01 49.0 3014.0 _CSVGTGGTNEKLFF 638 3040 EBV-BLMF1 EBV 0.56 2531 NEG 186 2854 10 EBV BLMF1 GLCTLVAML effector memory T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*02:01 B2M MHCI -1018 chip0420_345918 9.71 9.7 Chip1 T1D_1 T1D _ 6746 4264 EBV-BLMF1 EBV 0.82 2531 EBV-BLMF1 172 4092 8 EBV BLMF1 GLCTLVAML effector memory T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*02:01 B2M MHCI -1019 chip0420_38935 9.58 9.28 Chip1 T1D_1 T1D TGTGCAGCAAGCGGCGGAAGCCAAGGAAATCTCATCTCT CAASGGSQGNLIS TRAV29/DV5*01 TRAJ42*01 20.0 1307.0 TGCAGCACCCAAGAGGGGGGGTATGGCTACACCTTC CSTQEGGYGYTF TRBV29-1*01 TRBJ1-2*01 47.0 3505.0 CAASGGSQGNLIS_CSTQEGGYGYTF 1 4292 EBV-BLMF1 EBV 0.91 2531 EBV-BLMF1 175 4117 8 EBV BLMF1 GLCTLVAML effector memory T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*02:01 B2M MHCI -1020 chip0420_449730 8.62 8.98 Chip1 T1D_1 T1D TGTGCCAGCAGCCCAGTTAGCGGGTCAACCTACGAGCAGTACTTC CASSPVSGSTYEQYF TRBV3-1*01 TRBJ2-7*01 14.0 578.0 _CASSPVSGSTYEQYF 80 4968 EBV-BLMF1 EBV 0.79 2531 EBV-BLMF1 215 4753 8 EBV BLMF1 GLCTLVAML effector memory T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*02:01 B2M MHCI -1021 chip0420_186022 10.07 9.54 Chip1 T1D_2 T1D TGCAGCGTGGGGACAGGGGGAACTAATGAAAAACTGTTTTTT CSVGTGGTNEKLFF TRBV29-1*01 TRBJ1-4*01 18.0 921.0 _CSVGTGGTNEKLFF 638 4642 EBV-BLMF1 EBV 0.56 2531 NEG 203 4439 9 EBV BLMF1 GLCTLVAML effector memory T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*02:01 B2M MHCI -1022 chip0420_235593 16.5 11.43 Chip1 T1D_1 T1D TGTGCCAGTAGTATAAATGGGGGCCGGAGGGATGGCTACACCTTC CASSINGGRRDGYTF TRBV19*01 TRBJ1-2*01 7.0 278.0 _CASSINGGRRDGYTF 32 2670 M1 FLU 0.7 1250 M1 174 2496 12 InfluenzaA M1 GILGFVFTL effector T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*02:01 B2M MHCI -1023 chip0420_638825 11.94 8.03 Chip1 T1D_2 T1D TGCAGCGTGGGGACAGGGGGAACTAATGAAAAACTGTTTTTT CSVGTGGTNEKLFF TRBV29-1*01 TRBJ1-4*01 51.0 2207.0 _CSVGTGGTNEKLFF 638 2737 EBV-BLMF1 EBV 0.56 2531 NEG 180 2557 10 EBV BLMF1 GLCTLVAML effector memory T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*02:01 B2M MHCI -1024 chip0420_277492 6.58 11.31 Chip1 T1D_1 T1D _ 6746 6214 EBV-LMP2-FLY EBV 0.95 355 EBV-LMP2-FLY 183 6031 7 EBV LMP2 FLYALALLL transitional T cells between effector and memory populations PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*02:01 B2M MHCI -1025 chip0420_271901 14.35 10.41 Chip1 T1D_1 T1D TGTGCTGTGGTCTCAAATTCCGGGTATGCACTCAACTTC CAVVSNSGYALNF TRAV21*01 TRAJ41*01 4.0 580.0 TGTGCCAGCAGTTCCGGAGGGAACGTGGATACGCAGTATTTT CASSSGGNVDTQYF TRBV7-3*01 TRBJ2-3*01 29.0 1099.0 CAVVSNSGYALNF_CASSSGGNVDTQYF 8 3963 EBV-BLMF1 EBV 0.54 2531 NEG 201 3762 12 EBV BLMF1 GLCTLVAML effector T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*02:01 B2M MHCI -1026 chip0420_234846 5.52 8.58 Chip1 T1D_2 T1D TGCAGCGTTGAAGTGGGGGCAGGACGGGCCGGGGAGCTGTTTTTT CSVEVGAGRAGELFF TRBV29-1*01 TRBJ2-2*01 8.0 435.0 _CSVEVGAGRAGELFF 1 6325 EBV-LMP2-FLY EBV 0.92 355 NEG 173 6152 6 EBV LMP2 FLYALALLL central memory T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*02:01 B2M MHCI -1027 chip0420_573807 11.26 7.56 Chip1 T1D_1 T1D TGTGCCCGCAGTCCGGACCAAACTAGCTCCTACAATGAGCAGTTCGTC CARSPDQTSSYNEQFV TRBV27*01 TRBJ2-1*01 5.0 189.0 _CARSPDQTSSYNEQFV 1 4440 EBV-BRLF1 EBV 0.87 1264 EBV-BRLF1 190 4250 10 EBV BRLF1 YVLDHLIVV effector memory T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*02:01 B2M MHCI -1028 chip0420_476387 -3.57 9.06 Chip1 T1D_1 T1D _ 6746 5302 PGT-178 PGT 0.87 1480 PGT-178 157 5145 2 HomoSapiens PGT LLAGIGTVPI Naive T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*02:01 B2M MHCI -1029 chip0420_874829 13.93 7.9 Chip1 T1D_2 T1D TGCAGCGTGGGGACAGGGGGAACTAATGAAAAACTGTTTTTT CSVGTGGTNEKLFF TRBV29-1*01 TRBJ1-4*01 124.0 6102.0 _CSVGTGGTNEKLFF 638 1926 EBV-BLMF1 EBV 0.8 2531 NEG 172 1754 10 EBV BLMF1 GLCTLVAML effector memory T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*02:01 B2M MHCI -1030 chip0420_752788 9.07 9.65 Chip1 T1D_1 T1D TGTACCAGCAGTTCGGGACAGGTACTTCCCAATGAGCAGTTCTTC CTSSSGQVLPNEQFF TRBV2*01 TRBJ2-1*01 14.0 616.0 _CTSSSGQVLPNEQFF 1 6360 EBV-BLMF1 EBV 1.0 2531 NEG 164 6196 8 EBV BLMF1 GLCTLVAML effector memory T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*02:01 B2M MHCI -1031 chip0420_754517 11.36 7.04 Chip1 T1D_2 T1D TGCAGCGTCGGCTCCAGGGGAACTAATGAAAAACTGTTTTTT CSVGSRGTNEKLFF TRBV29-1*01 TRBJ1-4*01 6.0 194.0 _CSVGSRGTNEKLFF 283 3920 EBV-BLMF1 EBV 0.67 2531 NEG 213 3707 10 EBV BLMF1 GLCTLVAML effector memory T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*02:01 B2M MHCI -1032 chip0420_442227 7.82 10.68 Chip1 T1D_2 T1D TGTGCAGCAAGTAGGGTGTGCAAGCTGCTTTTT CAASRVCKLLF TRAV23/DV6*01 TRAJ4*01 5.0 967.0 CAASRVCKLLF_ 1 3809 EBV-BRLF1 EBV 0.82 1264 EBV-BRLF1 194 3615 7 EBV BRLF1 YVLDHLIVV transitional T cells between effector and memory populations PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*02:01 B2M MHCI -1033 chip0420_134092 14.31 10.17 Chip1 T1D_1 T1D TGTGCCACCCAACAGGGGAGGGACAGTCAGCCCCAGCATTTT CATQQGRDSQPQHF TRBV28*01 TRBJ1-5*01 36.0 1623.0 _CATQQGRDSQPQHF 52 2749 EBV-BLMF1 EBV 0.7 2531 EBV-BLMF1 157 2592 12 EBV BLMF1 GLCTLVAML effector T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*02:01 B2M MHCI -1034 chip0420_777803 16.04 11.18 Chip1 T1D_2 T1D TGCAGCGTGGGGACAGGGGGAACTAATGAAAAACTGTTTTTT CSVGTGGTNEKLFF TRBV29-1*01 TRBJ1-4*01 37.0 1737.0 _CSVGTGGTNEKLFF 638 2164 EBV-BLMF1 EBV 0.75 2531 NEG 200 1964 12 EBV BLMF1 GLCTLVAML effector T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*02:01 B2M MHCI -1035 chip0420_87894 5.63 8.68 Chip1 T1D_1 T1D TGTGCCAGCAGCCCGGGGGACGCCCGTGGCGAGCAGTACTTC CASSPGDARGEQYF TRBV5-6*01 TRBJ2-7*01 23.0 805.0 _CASSPGDARGEQYF 12 5214 EBV-LMP1-1 EBV 0.88 237 EBV-LMP1-1 218 4996 6 EBV LMP1 YLLEMLWRL central memory T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*02:01 B2M MHCI -1036 chip0420_172322 9.17 10.35 Chip1 T1D_2 T1D TGTGCAGAGAGTACTTCGGGAGGAAAGCTTATCTTC CAESTSGGKLIF TRAV5*01 TRAJ23*01 31.0 2287.0 TGCAGCGTGGGGACAGGGGGAACTAATGAAAAACTGTTTTTT CSVGTGGTNEKLFF TRBV29-1*01 TRBJ1-4*01 72.0 3281.0 CAESTSGGKLIF_CSVGTGGTNEKLFF 107 4785 EBV-BLMF1 EBV 1.0 2531 NEG 192 4593 9 EBV BLMF1 GLCTLVAML effector memory T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*02:01 B2M MHCI -1037 chip0420_695407 9.43 10.91 Chip1 T1D_1 T1D TGTGCAATGAGAGAGGGCCGCAGGCCAACTAATCTTT CAMREG??cAGQLIF TRAV14/DV4*01 TRAJ37*01 30.0 2209.0 CAMREG??cAGQLIF_ 1 4461 CVB3-P3A CVB 0.96 77 CVB3-P3A 160 4301 9 CoxsackievirusB P3A GIIYIIYKL effector memory T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*02:01 B2M MHCI -1038 chip0420_508638 12.31 13.46 Chip1 T1D_2 T1D TGCGCCAGCAGGATGGGGGCCGGGGATACGCAGTATTTT CASRMGAGDTQYF TRBV10-2*01 TRBJ2-3*01 8.0 607.0 _CASRMGAGDTQYF 90 1620 EBV-BLMF1 EBV 0.89 2531 NEG 168 1452 11 EBV BLMF1 GLCTLVAML effector T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*02:01 B2M MHCI -1039 chip0420_404168 -0.35 9.62 Chip1 T1D_1 T1D TGTGCAATGAGCATATCTAACTTTGGAAATGAGAAATTAACCTTT CAMSISNFGNEKLTF TRAV12-3*01 TRAJ48*01 33.0 1366.0 CAMSISNFGNEKLTF_ 13 5266 PGT-178 PGT 0.73 1480 PGT-178 181 5085 3 HomoSapiens PGT LLAGIGTVPI Naive T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*02:01 B2M MHCI -1040 chip0420_812060 5.76 13.44 Chip1 T1D_1 T1D _ 6746 5198 M1 FLU 0.73 1250 M1 167 5031 7 InfluenzaA M1 GILGFVFTL transitional T cells between effector and memory populations PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*02:01 B2M MHCI -1041 chip0420_773475 14.44 10.08 Chip1 T1D_2 T1D TGCAGCGTGGGGACAGGGGGAACTAATGAAAAACTGTTTTTT CSVGTGGTNEKLFF TRBV29-1*01 TRBJ1-4*01 73.0 3227.0 _CSVGTGGTNEKLFF 638 3101 EBV-BLMF1 EBV 1.0 2531 NEG 174 2927 12 EBV BLMF1 GLCTLVAML effector T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*02:01 B2M MHCI -1042 chip0420_594595 7.74 9.69 Chip1 T1D_2 T1D TGTGCCGTGAAGGACACCGACAAGCTCATCTTT CAVKDTDKLIF TRAV8-1*01 TRAJ34*01 30.0 2200.0 TGTGCCTGGAGTGGCTCCGGGACTAGCGGGATTATGTACAATGAGCAGTTCTTC CAWSGSGTSGIMYNEQFF TRBV30*01 TRBJ2-1*01 49.0 2012.0 CAVKDTDKLIF_CAWSGSGTSGIMYNEQFF 1 6812 EBV-BRLF1 EBV 0.92 1264 EBV-BRLF1 188 6624 8 EBV BRLF1 YVLDHLIVV effector memory T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*02:01 B2M MHCI -1043 chip0420_859454 16.1 11.34 Chip1 T1D_1 T1D _ 6746 2513 EBV-BLMF1 EBV 0.57 2531 NEG 182 2331 12 EBV BLMF1 GLCTLVAML effector T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*02:01 B2M MHCI -1044 chip0420_877038 7.97 13.81 Chip1 T1D_1 T1D TGTGCCAGTAGTATAAATGGGGGCCGGAGGGATGGCTACACCTTC CASSINGGRRDGYTF TRBV19*01 TRBJ1-2*01 1.0 53.0 _CASSINGGRRDGYTF 32 2999 M1 FLU 1.0 1250 NEG 166 2833 7 InfluenzaA M1 GILGFVFTL transitional T cells between effector and memory populations PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*02:01 B2M MHCI -1045 chip0420_798076 13.05 8.31 Chip1 T1D_2 T1D TGCGCCAGCAGAGCGGGAGCCGGGGATACGCAGTATTTT CASRAGAGDTQYF TRBV10-2*01 TRBJ2-3*01 20.0 1290.0 _CASRAGAGDTQYF 59 2881 EBV-BLMF1 EBV 0.75 2531 NEG 203 2678 10 EBV BLMF1 GLCTLVAML effector memory T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*02:01 B2M MHCI -1046 chip0420_285479 9.96 10.3 Chip1 T1D_1 T1D _ 6746 3382 EBV-BLMF1 EBV 0.75 2531 NEG 171 3211 9 EBV BLMF1 GLCTLVAML effector memory T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*02:01 B2M MHCI -1047 chip0420_284198 6.11 13.33 Chip1 T1D_1 T1D TGTGGCCCTCCAGAGAATGACAGCTGGGGGAAATTGCAGTTT CGPPENDSWGKLQF TRAV30*01 TRAJ24*01 34.0 2105.0 CGPPENDSWGKLQF_ 1 4188 M1 FLU 0.84 1250 M1 166 4022 7 InfluenzaA M1 GILGFVFTL transitional T cells between effector and memory populations PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*02:01 B2M MHCI -1048 chip0420_575053 11.68 10.5 Chip1 T1D_2 T1D TGCAGCGTGGGGACAGGGGGAACTAATGAAAAACTGTTTTTT CSVGTGGTNEKLFF TRBV29-1*01 TRBJ1-4*01 140.0 5556.0 _CSVGTGGTNEKLFF 638 4254 EBV-BLMF1 EBV 0.8 2531 NEG 197 4057 9 EBV BLMF1 GLCTLVAML effector memory T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*02:01 B2M MHCI -1049 chip0420_185544 12.16 6.57 Chip1 T1D_2 T1D TGTGCAGAGAGTACTTCGGGAGGAAAGCTTATCTTC CAESTSGGKLIF TRAV5*01 TRAJ23*01 24.0 2042.0 TGCAGCGTGGGGACAGGGGGAACTAATGAAAAACTGTTTTTT CSVGTGGTNEKLFF TRBV29-1*01 TRBJ1-4*01 67.0 3996.0 CAESTSGGKLIF_CSVGTGGTNEKLFF 107 3872 EBV-BLMF1 EBV 1.0 2531 NEG 216 3656 10 EBV BLMF1 GLCTLVAML effector memory T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*02:01 B2M MHCI -1050 chip0420_818520 5.4 8.93 Chip1 T1D_1 T1D TGTGCCAGCAGCCCGAGGGACGCCCGTGGCGAGCAGTACTTC CASSPRDARGEQYF TRBV5-6*01 TRBJ2-7*01 12.0 548.0 _CASSPRDARGEQYF 1 5728 EBV-LMP1-1 EBV 1.0 237 EBV-LMP1-1 203 5525 6 EBV LMP1 YLLEMLWRL central memory T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*02:01 B2M MHCI -1051 chip0420_750343 10.43 13.96 Chip1 T1D_1 T1D TGTGCCAGTAGTATAAATGGGGGCCGGAGGGATGGCTACACCTTC CASSINGGRRDGYTF TRBV19*01 TRBJ1-2*01 25.0 968.0 _CASSINGGRRDGYTF 32 1437 M1 FLU 0.78 1250 NEG 189 1248 11 InfluenzaA M1 GILGFVFTL effector T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*02:01 B2M MHCI -1052 chip0420_105695 12.78 10.38 Chip1 T1D_1 T1D TGTGCCTGGAGTGGAGGGAGGGGGGTCGGCTCCTACAATGAGCAGTTCTTC CAWSGGRGVGSYNEQFF TRBV30*01 TRBJ2-1*01 39.0 1776.0 _CAWSGGRGVGSYNEQFF 1 3363 EBV-BRLF1 EBV 0.66 1264 EBV-BRLF1 190 3173 9 EBV BRLF1 YVLDHLIVV effector memory T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*02:01 B2M MHCI -1053 chip0420_557254 12.83 8.29 Chip1 T1D_2 T1D TGCGCCAGCAGAGCGGGAGCCGGGGATACGCAGTATTTT CASRAGAGDTQYF TRBV10-2*01 TRBJ2-3*01 82.0 4402.0 _CASRAGAGDTQYF 59 2737 EBV-BLMF1 EBV 0.73 2531 NEG 194 2543 10 EBV BLMF1 GLCTLVAML effector memory T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*02:01 B2M MHCI -1054 chip0420_342634 -1.27 9.65 Chip1 T1D_1 T1D TGTGCCAGCAGTTCCTACGAGCAGTACTTC CASSSYEQYF TRBV28*01 TRBJ2-7*01 26.0 2032.0 _CASSSYEQYF 1 5403 PGT-178 PGT 0.69 1480 PGT-178 184 5219 3 HomoSapiens PGT LLAGIGTVPI Naive T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*02:01 B2M MHCI -1055 chip0420_883547 14.64 13.2 Chip1 T1D_2 T1D _ 6746 1356 EBV-BRLF1 EBV 1.0 1264 NEG 161 1195 12 EBV BRLF1 YVLDHLIVV effector T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*02:01 B2M MHCI -1056 chip0420_796796 15.01 9.86 Chip1 T1D_1 T1D _ 6746 3856 EBV-BLMF1 EBV 0.43 2531 NEG 187 3669 12 EBV BLMF1 GLCTLVAML effector T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*02:01 B2M MHCI -1057 chip0420_59881 9.57 8.42 Chip1 T1D_1 T1D TGTGCCACCCAACAGGGGAGGGACAGTCAGCCCCAGCATTTT CATQQGRDSQPQHF TRBV28*01 TRBJ1-5*01 33.0 1251.0 _CATQQGRDSQPQHF 52 5530 EBV-BLMF1 EBV 1.0 2531 NEG 181 5349 8 EBV BLMF1 GLCTLVAML effector memory T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*02:01 B2M MHCI -1058 chip0420_23165 9.96 10.78 Chip1 T1D_2 T1D TGCGCCCGCAGAGCGGGAGCCGGGGATACGCAGTATTTT CARRAGAGDTQYF TRBV10-2*01 TRBJ2-3*01 14.0 827.0 _CARRAGAGDTQYF 1 3195 EBV-BLMF1 EBV 0.62 2531 NEG 195 3000 9 EBV BLMF1 GLCTLVAML effector memory T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*02:01 B2M MHCI -1059 chip0420_789310 10.9 13.79 Chip1 T1D_1 T1D TGTGTGGTGAACGGGGGGGATAGCAGCTATAAATTGATCTTC CVVNGGDSSYKLIF TRAV12-1*01 TRAJ12*01 35.0 2089.0 TGTGCCAGCAGTTCGGGACAGGTACTTCCCAATGAGCAGTTCTTC CASSSGQVLPNEQFF TRBV2*01 TRBJ2-1*01 18.0 891.0 CVVNGGDSSYKLIF_CASSSGQVLPNEQFF 31 1893 EBV-BLMF1 EBV 0.57 2531 NEG 191 1702 11 EBV BLMF1 GLCTLVAML effector T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*02:01 B2M MHCI -1060 chip0420_747738 7.67 10.56 Chip1 T1D_2 T1D TGCAGCGTGGGGACAGGGGGAACTAATGAAAAACTGTTTTTT CSVGTGGTNEKLFF TRBV29-1*01 TRBJ1-4*01 35.0 1923.0 _CSVGTGGTNEKLFF 638 4720 EBV-BLMF1 EBV 1.0 2531 NEG 162 4558 7 EBV BLMF1 GLCTLVAML transitional T cells between effector and memory populations PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*02:01 B2M MHCI -1061 chip0420_533333 12.25 7.39 Chip1 T1D_2 T1D TGTGCCAGCACCGACACCCTCAGCCTCCTTAACACCGGGGAGCTGTTTTTT CASTDTLSLLNTGELFF TRBV28*01 TRBJ2-2*01 9.0 415.0 _CASTDTLSLLNTGELFF 1 3611 EBV-BRLF1 EBV 0.94 1264 EBV-BRLF1 204 3407 10 EBV BRLF1 YVLDHLIVV effector memory T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*02:01 B2M MHCI -1062 chip0420_782642 15.73 9.82 Chip1 T1D_2 T1D TGCAGCGTGGGGACAGGGGGAACTAATGAAAAACTGTTTTTT CSVGTGGTNEKLFF TRBV29-1*01 TRBJ1-4*01 215.0 10157.0 _CSVGTGGTNEKLFF 638 2692 EBV-BLMF1 EBV 0.5 2531 NEG 193 2499 12 EBV BLMF1 GLCTLVAML effector T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*02:01 B2M MHCI -1063 chip0420_227078 14.17 7.8 Chip1 T1D_2 T1D TGTGTAGTGAACGGCAGGGATAGCAGCTATAAATTGATCTTC CVVNGRDSSYKLIF TRAV12-1*01 TRAJ12*01 91.0 4255.0 TGTGCCAGCAGCTCGGGACTAGTCGCCCCCGGGGAGCTGTTTTTT CASSSGLVAPGELFF TRBV2*01 TRBJ2-2*01 60.0 3477.0 CVVNGRDSSYKLIF_CASSSGLVAPGELFF 98 2996 EBV-BLMF1 EBV 1.0 2531 NEG 165 2831 10 EBV BLMF1 GLCTLVAML effector memory T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*02:01 B2M MHCI -1064 chip0420_800772 9.69 9.74 Chip1 T1D_1 T1D TGTGCCAGCAGCCCAGTTAGCGGGTCAACCTACGAGCAGTACTTC CASSPVSGSTYEQYF TRBV3-1*01 TRBJ2-7*01 24.0 1457.0 _CASSPVSGSTYEQYF 80 6631 EBV-BLMF1 EBV 1.0 2531 EBV-BLMF1 187 6444 9 EBV BLMF1 GLCTLVAML effector memory T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*02:01 B2M MHCI -1065 chip0420_45191 9.08 9.02 Chip1 T1D_2 T1D TGCAGCGTGGGGACAGGGGGAACTAATGAAAAACTGTTTTTT CSVGTGGTNEKLFF TRBV29-1*01 TRBJ1-4*01 44.0 2289.0 _CSVGTGGTNEKLFF 638 3900 EBV-BLMF1 EBV 0.67 2531 NEG 186 3714 8 EBV BLMF1 GLCTLVAML effector memory T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*02:01 B2M MHCI -1066 chip0420_515507 11.14 6.78 Chip1 T1D_2 T1D TGTGTGGTGAACGGCAGGGATAGCAGCTATAAATTGATCTCC CVVNGRDSSYKLIS TRAV12-1*01 TRAJ12*01 54.0 2913.0 TGTGCCAGCAGCTCGGGACTAGTCGCCCCCGGGGAGCTGTTTTTT CASSSGLVAPGELFF TRBV2*01 TRBJ2-2*01 104.0 5941.0 CVVNGRDSSYKLIS_CASSSGLVAPGELFF 3 4646 EBV-BLMF1 EBV 0.55 2531 NEG 185 4461 10 EBV BLMF1 GLCTLVAML effector memory T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*02:01 B2M MHCI -1067 chip0420_285502 10.59 9.04 Chip1 T1D_1 T1D TGTGCCGTGAGAGGAAGCCAAGGAAATCTCATCTTT CAVRGSQGNLIF TRAV8-1*01 TRAJ42*01 73.0 4255.0 TGTGCCAGCAGCCAAGTGATAACTATCAATGAGCAGTTCTTC CASSQVITINEQFF TRBV3-1*01 TRBJ2-1*01 73.0 5290.0 CAVRGSQGNLIF_CASSQVITINEQFF 1 4859 EBV-BRLF1 EBV 0.6 1264 NEG 157 4702 10 EBV BRLF1 YVLDHLIVV effector memory T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*02:01 B2M MHCI -1068 chip0420_367120 6.47 14.36 Chip1 T1D_1 T1D TGTGCCAGTAGTATAAATGGGGGCCGGAGGGATGGCTACACCTTC CASSINGGRRDGYTF TRBV19*01 TRBJ1-2*01 28.0 1173.0 _CASSINGGRRDGYTF 32 3548 M1 FLU 0.77 1250 M1 196 3352 7 InfluenzaA M1 GILGFVFTL transitional T cells between effector and memory populations PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*02:01 B2M MHCI -1069 chip0420_703388 -1.75 9.24 Chip1 T1D_2 T1D TGTGCAATGAGTTTATCTAACTTTGGAAATGAGAAATTCACCTTT CAMSLSNFGNEKFTF TRAV12-3*01 TRAJ48*01 73.0 2084.0 TGTGCCAGCAGTTTGAGGCACGATGCGACCTACGAGCAGTACTTC CASSLRHDATYEQYF TRBV28*01 TRBJ2-7*01 31.0 1406.0 CAMSLSNFGNEKFTF_CASSLRHDATYEQYF 1 5426 PGT-178 PGT 0.72 1480 PGT-178 180 5246 3 HomoSapiens PGT LLAGIGTVPI Naive T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*02:01 B2M MHCI -1070 chip0420_285314 -0.42 9.56 Chip1 T1D_1 T1D TGTGTTGTGAGTGACGTTACCTCAGGAACCTACAAATACATCTTT CVVSDVTSGTYKYIF TRAV8-2*01 TRAJ40*01 2.0 136.0 CVVSDVTSGTYKYIF_ 1 5332 IGRP-211-219 IGRP 0.64 13 IGRP-211-219 151 5181 3 HomoSapiens IGRP NLFLFLFAV Naive T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*02:01 B2M MHCI -1071 chip0420_829695 12.22 7.06 Chip1 T1D_1 T1D _ 6746 3134 EBV-BLMF1 EBV 0.73 2531 EBV-BLMF1 214 2920 10 EBV BLMF1 GLCTLVAML effector memory T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*02:01 B2M MHCI -1072 chip0420_507781 8.98 11.32 Chip1 T1D_2 T1D TGCAGCGTGGGGACAGGGGGAACTAATGAAAAACTGTTTTTT CSVGTGGTNEKLFF TRBV29-1*01 TRBJ1-4*01 57.0 2566.0 _CSVGTGGTNEKLFF 638 4389 EBV-BLMF1 EBV 0.6 2531 NEG 172 4217 9 EBV BLMF1 GLCTLVAML effector memory T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*02:01 B2M MHCI -1073 chip0420_367208 11.74 7.34 Chip1 T1D_2 T1D TGTGCCAGCAGCTCGGGACTAGTCGCCCCCGGGGAGCTGTTTTTT CASSSGLVAPGELFF TRBV2*01 TRBJ2-2*01 30.0 1990.0 _CASSSGLVAPGELFF 133 4225 EBV-BLMF1 EBV 0.83 2531 NEG 189 4036 10 EBV BLMF1 GLCTLVAML effector memory T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*02:01 B2M MHCI -1074 chip0420_235070 10.99 10.68 Chip1 T1D_2 T1D TGTGCCAGCAGTCCCAAAAGGGGAAGAAACAATGAAGCTTTCTTT CASSPKRGRNNEAFF TRBV25-1*01 TRBJ1-1*01 5.0 102.0 _CASSPKRGRNNEAFF 1 2687 EBV-BRLF1 EBV 0.87 1264 EBV-BRLF1 178 2509 9 EBV BRLF1 YVLDHLIVV effector memory T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*02:01 B2M MHCI -1075 chip0420_641567 13.64 10.98 Chip1 T1D_1 T1D TGTGTGGTGAACGGACGGGATAGCAGCTATAAATTGATCTTC CVVNGRDSSYKLIF TRAV12-1*01 TRAJ12*01 43.0 2120.0 TGTGCCAGCAGTGACGGTCGGGTCCACCCGGGGACCCAGTACTTC CASSDGRVHPGTQYF TRBV2*01 TRBJ2-5*01 50.0 2957.0 CVVNGRDSSYKLIF_CASSDGRVHPGTQYF 14 3044 EBV-BLMF1 EBV 0.8 2531 NEG 173 2871 9 EBV BLMF1 GLCTLVAML effector memory T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*02:01 B2M MHCI -1076 chip0420_45491 7.36 11.12 Chip1 T1D_2 T1D TGTGCTCCGGTGGGCGCTTCAGGATACAGCACCCTCACCTGT CAPVGASGYSTLTC TRAV17*01 TRAJ11*01 48.0 2528.0 TGTGCCAGCAGTCCCCAAGGGGGGGCCAGTGAAGCTTTCTTT CASSPQGGASEAFF TRBV6-1*01 TRBJ1-1*01 2.0 64.0 CAPVGASGYSTLTC_CASSPQGGASEAFF 1 4513 EBV-LMP2-FLY EBV 0.5 355 NEG 170 4343 7 EBV LMP2 FLYALALLL transitional T cells between effector and memory populations PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*02:01 B2M MHCI -1077 chip0420_217337 6.89 13.14 Chip1 T1D_1 T1D _ 6746 3435 M1 FLU 0.75 1250 NEG 178 3257 7 InfluenzaA M1 GILGFVFTL transitional T cells between effector and memory populations PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*02:01 B2M MHCI -1078 chip0420_496581 8.97 7.86 Chip1 T1D_1 T1D TGTGCCGTGGGGGGGAGTGGAAAGCTGACATTT CAVGGSGKLTF TRAV12-2*01 TRAJ52*01 24.0 2041.0 CAVGGSGKLTF_ 1 5716 PGT-178 PGT 0.69 1480 PGT-178 184 5532 8 HomoSapiens PGT LLAGIGTVPI effector memory T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*02:01 B2M MHCI -1079 chip0420_255672 14.82 11.08 Chip1 T1D_2 T1D TGTGCTTCCCTAGCCCCGGGGGCTTCCAAGATAATCTTT CASLAPGASKIIF TRAV8-6*01 TRAJ3*01 38.0 2096.0 TGTGCCAGCAGCTCGGGACTAGTCGCCCCCGGGGAGCTGTTTTTT CASSSGLVAPGELFF TRBV2*01 TRBJ2-2*01 104.0 4493.0 CASLAPGASKIIF_CASSSGLVAPGELFF 1 3224 EBV-BLMF1 EBV 0.56 2531 NEG 175 3049 12 EBV BLMF1 GLCTLVAML effector T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*02:01 B2M MHCI -1080 chip0420_468745 5.71 12.22 Chip1 T1D_1 T1D _ 6746 6405 M1 FLU 0.92 1250 M1 165 6240 7 InfluenzaA M1 GILGFVFTL transitional T cells between effector and memory populations PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*02:01 B2M MHCI -1081 chip0420_710345 16.06 10.95 Chip1 T1D_2 T1D TGCAGCGTGGGGACAGGGGGAACTAATGAAAAACTGTTTTTT CSVGTGGTNEKLFF TRBV29-1*01 TRBJ1-4*01 124.0 5398.0 _CSVGTGGTNEKLFF 638 2181 EBV-BLMF1 EBV 0.56 2531 NEG 178 2003 12 EBV BLMF1 GLCTLVAML effector T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*02:01 B2M MHCI -1082 chip0420_720999 9.13 9.78 Chip1 T1D_2 T1D TGTGCAGAGAGTACTTCGGGAGGAAAGCTTATCTTC CAESTSGGKLIF TRAV5*01 TRAJ23*01 28.0 2337.0 TGCAGCGTGGGGACAGGGGGAACTAATGAAAAACTGTTTTTT CSVGTGGTNEKLFF TRBV29-1*01 TRBJ1-4*01 111.0 5155.0 CAESTSGGKLIF_CSVGTGGTNEKLFF 107 4110 EBV-BLMF1 EBV 0.83 2531 NEG 194 3916 8 EBV BLMF1 GLCTLVAML effector memory T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*02:01 B2M MHCI -1083 chip0420_668474 8.78 8.13 Chip1 T1D_1 T1D TGTGCTCCCTTACAATGCTCGCATCTACCGTACGCTCACTTGG CAPLQCS??cIYRTLTW TRAV36/DV7*01 TRAJ38*01 4.0 183.0 TGTGCCAGCAGCACGGGACAGCTATCGAACACCGGGGAGCTGTTTTTT CASSTGQLSNTGELFF TRBV9*01 TRBJ2-2*01 7.0 293.0 CAPLQCS??cIYRTLTW_CASSTGQLSNTGELFF 1 6712 EBV-BLMF1 EBV 0.63 2531 EBV-BLMF1 204 6508 8 EBV BLMF1 GLCTLVAML effector memory T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*02:01 B2M MHCI -1084 chip0420_578580 11.05 10.84 Chip1 T1D_2 T1D TGCAGCGTGGGGACAGGGGGAACTAATGAAAAACTGTTTTTT CSVGTGGTNEKLFF TRBV29-1*01 TRBJ1-4*01 10.0 416.0 _CSVGTGGTNEKLFF 638 2901 EBV-BLMF1 EBV 1.0 2531 NEG 181 2720 9 EBV BLMF1 GLCTLVAML effector memory T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*02:01 B2M MHCI -1085 chip0420_176498 10.51 10.96 Chip1 T1D_1 T1D _ 6746 3192 EBV-BLMF1 EBV 0.94 2531 EBV-BLMF1 215 2977 9 EBV BLMF1 GLCTLVAML effector memory T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*02:01 B2M MHCI -1086 chip0420_425265 -1.5 11.39 Chip1 T1D_1 T1D TGTGCCAGCAGCTTAGGAAACACCGGGGAGCTGTTTTTT CASSLGNTGELFF TRBV11-3*01 TRBJ2-2*01 15.0 825.0 _CASSLGNTGELFF 1 3910 PGT-178 PGT 0.89 1480 PGT-178 175 3735 3 HomoSapiens PGT LLAGIGTVPI Naive T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*02:01 B2M MHCI -1087 chip0420_271312 10.96 7.58 Chip1 T1D_2 T1D TGTGTGGTGAACGACAGGGATAGCAGCTATAAATTGATCTTC CVVNDRDSSYKLIF TRAV12-1*01 TRAJ12*01 51.0 2319.0 CVVNDRDSSYKLIF_ 1 4286 EBV-BLMF1 EBV 0.71 2531 NEG 189 4097 10 EBV BLMF1 GLCTLVAML effector memory T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*02:01 B2M MHCI -1088 chip0420_602068 14.24 8.1 Chip1 T1D_1 T1D TGTGCCAGCAGCCCAGTTAGCGGGTCAACCTACGAGCAGTACTTC CASSPVSGSTYEQYF TRBV3-1*01 TRBJ2-7*01 31.0 1928.0 _CASSPVSGSTYEQYF 80 2772 EBV-BLMF1 EBV 0.76 2531 NEG 177 2595 10 EBV BLMF1 GLCTLVAML effector memory T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*02:01 B2M MHCI -1089 chip0420_148220 14.77 11.38 Chip1 T1D_2 T1D TGCAGCGTGGGGACAGGGGGAACTAATGAAAAACTGTTTTTT CSVGTGGTNEKLFF TRBV29-1*01 TRBJ1-4*01 85.0 3692.0 _CSVGTGGTNEKLFF 638 2211 EBV-BLMF1 EBV 0.44 2531 NEG 171 2040 12 EBV BLMF1 GLCTLVAML effector T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*02:01 B2M MHCI -1090 chip0420_442949 10.3 11.44 Chip1 T1D_1 T1D TGTGCCAGCAGCCCAGTTAGCGGGTCAACCTACGAGCAGTACTTC CASSPVSGSTYEQYF TRBV3-1*01 TRBJ2-7*01 40.0 2098.0 _CASSPVSGSTYEQYF 80 3849 EBV-BLMF1 EBV 0.93 2531 NEG 172 3677 9 EBV BLMF1 GLCTLVAML effector memory T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*02:01 B2M MHCI -1091 chip0420_175476 12.06 7.11 Chip1 T1D_1 T1D TGCAGCGTCGGCTCCAGGGGAACTAATGAAAAACTGTTTTTT CSVGSRGTNEKLFF TRBV29-1*01 TRBJ1-4*01 98.0 3457.0 _CSVGSRGTNEKLFF 283 4089 EBV-BLMF1 EBV 0.46 2531 NEG 221 3868 10 EBV BLMF1 GLCTLVAML effector memory T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*02:01 B2M MHCI -1092 chip0420_844126 -0.95 9.15 Chip1 T1D_1 T1D TGCAGTGCTAGACTCCTAGCGGGTAACACCGGGGAGCTGTTTTTT CSARLLAGNTGELFF TRBV20-1*01 TRBJ2-2*01 4.0 156.0 _CSARLLAGNTGELFF 1 6098 PTPRN-797-805 PTPRN 0.97 12 PTPRN-797-805 184 5914 3 HomoSapiens PTPRN MVWESGCTV Naive T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*02:01 B2M MHCI -1093 chip0420_701143 5.6 9.2 Chip1 T1D_2 T1D TGTGCTATGGGTGGGGGTTCTGGATACAGCACCCTCACCTTT CAMGGGSGYSTLTF TRAV17*01 TRAJ11*01 50.0 1882.0 TGTGCCAGCAGCCGACAGGGAGGGCAGGATGGCTACACCTTC CASSRQGGQDGYTF TRBV6-1*01 TRBJ1-2*01 40.0 2023.0 CAMGGGSGYSTLTF_CASSRQGGQDGYTF 1 5558 EBV-LMP2-FLY EBV 0.86 355 NEG 185 5373 6 EBV LMP2 FLYALALLL central memory T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*02:01 B2M MHCI -1094 chip0420_762607 12.54 9.01 Chip1 T1D_2 T1D TGTGCCTGGAGTGTACAGCTAGCGGGAGTAGACGAGCAGTACTTC CAWSVQLAGVDEQYF TRBV30*01 TRBJ2-7*01 37.0 1103.0 _CAWSVQLAGVDEQYF 11 1844 EBV-BRLF1 EBV 0.82 1264 NEG 194 1650 10 EBV BRLF1 YVLDHLIVV effector memory T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*02:01 B2M MHCI -1095 chip0420_740110 14.11 9.91 Chip1 T1D_1 T1D _ 6746 4074 EBV-BLMF1 EBV 0.67 2531 NEG 186 3888 12 EBV BLMF1 GLCTLVAML effector T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*02:01 B2M MHCI -1096 chip0420_729341 6.61 13.13 Chip1 T1D_1 T1D TGTGCCAGTAGTATCAGGTCTGCCTACGAGCAGTACTTC CASSIRSAYEQYF TRBV19*01 TRBJ2-7*01 34.0 2516.0 _CASSIRSAYEQYF 11 3769 M1 FLU 0.81 1250 M1 174 3595 7 InfluenzaA M1 GILGFVFTL transitional T cells between effector and memory populations PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*02:01 B2M MHCI -1097 chip0420_94136 -3.16 12.08 Chip1 T1D_1 T1D TGTGCCGTGACTCAGGGCATGCGCTTT CAVTQGMRF TRAV12-2*01 TRAJ43*01 7.0 782.0 TGCAGTGCTGAGTCCGGGACTGGGATTAATGAGCAGTTCTTC CSAESGTGINEQFF TRBV20-1*01 TRBJ2-1*01 1.0 106.0 CAVTQGMRF_CSAESGTGINEQFF 1 4131 PGT-178 PGT 0.5 1480 PGT-178 185 3946 1 HomoSapiens PGT LLAGIGTVPI Naive T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*02:01 B2M MHCI -1098 chip0420_520364 9.4 10.54 Chip1 T1D_2 T1D _ 6746 3438 EBV-BLMF1 EBV 1.0 2531 NEG 164 3274 9 EBV BLMF1 GLCTLVAML effector memory T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*02:01 B2M MHCI -1099 chip0420_127542 11.23 6.68 Chip1 T1D_1 T1D TGTGCCACCAGCCACCTCGGGAACTACAATGAGCAGTTCTTC CATSHLGNYNEQFF TRBV24-1*01 TRBJ2-1*01 9.0 307.0 _CATSHLGNYNEQFF 1 4938 EBV-BRLF1 EBV 0.86 1264 EBV-BRLF1 214 4724 10 EBV BRLF1 YVLDHLIVV effector memory T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*02:01 B2M MHCI -1100 chip0420_32404 8.6 9.79 Chip1 T1D_2 T1D TGTGCCGTGAACGACACCGCCCCGCTCCTCTTT CAVNDTAPLLF TRAV8-1*01 TRAJ34*01 6.0 541.0 CAVNDTAPLLF_ 1 5276 EBV-BRLF1 EBV 0.94 1264 EBV-BRLF1 177 5099 8 EBV BRLF1 YVLDHLIVV effector memory T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*02:01 B2M MHCI -1101 chip0420_686241 -2.16 12.24 Chip1 T1D_1 T1D TGTGCCGTTAATGCTGGTGGTACTAGCTATGGAAAGCTGACATTT CAVNAGGTSYGKLTF TRAV12-2*01 TRAJ52*01 67.0 2128.0 TGTGCCCGCGGTTTGGCGCCGGCCGGCACTGCAGCTTTCTTT CARGLAPAGTAAFF TRBV28*01 TRBJ1-1*01 5.0 141.0 CAVNAGGTSYGKLTF_CARGLAPAGTAAFF 1 5598 PGT-178 PGT 0.72 1480 PGT-178 176 5422 1 HomoSapiens PGT LLAGIGTVPI Naive T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*02:01 B2M MHCI -1102 chip0420_794703 12.83 7.43 Chip1 T1D_2 T1D TGCGCCAGCAGGATGGGGGCCGGGGATACGCAGTATTTT CASRMGAGDTQYF TRBV10-2*01 TRBJ2-3*01 29.0 1742.0 _CASRMGAGDTQYF 90 2635 EBV-BLMF1 EBV 0.57 2531 NEG 193 2442 10 EBV BLMF1 GLCTLVAML effector memory T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*02:01 B2M MHCI -1103 chip0420_347034 15.48 9.96 Chip1 T1D_2 T1D TGCAGCGTGGGGACAGGGGGAACTAATGAAAAACTGTTTTTT CSVGTGGTNEKLFF TRBV29-1*01 TRBJ1-4*01 50.0 3100.0 _CSVGTGGTNEKLFF 638 3305 EBV-BLMF1 EBV 0.6 2531 NEG 186 3119 12 EBV BLMF1 GLCTLVAML effector T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*02:01 B2M MHCI -1104 chip0420_785370 6.36 9.36 Chip1 T1D_1 T1D TGTGCCAGCAGCTTAGAAGTAGGCCTGAACTCCTACAATGAGCAGTTCTTC CASSLEVGLNSYNEQFF TRBV11-2*01 TRBJ2-1*01 17.0 331.0 _CASSLEVGLNSYNEQFF 1 7122 PGT-178 PGT 0.67 1480 PGT-178 163 6959 6 HomoSapiens PGT LLAGIGTVPI central memory T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*02:01 B2M MHCI -1105 chip0420_780350 12.59 6.93 Chip1 T1D_2 T1D TGCAGCGTGGGGACAGGGGGAACTAATGAAAAACTGTTTTTT CSVGTGGTNEKLFF TRBV29-1*01 TRBJ1-4*01 65.0 3347.0 _CSVGTGGTNEKLFF 638 3317 EBV-BLMF1 EBV 0.5 2531 NEG 168 3149 10 EBV BLMF1 GLCTLVAML effector memory T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*02:01 B2M MHCI -1106 chip0420_248342 6.03 12.51 Chip1 T1D_1 T1D TGCGCCAGCAGCCAAGACAGTAGCGGGGGGTTTACCTACGAGCAGTACTTC CASSQDSSGGFTYEQYF TRBV4-1*01 TRBJ2-7*01 60.0 2786.0 _CASSQDSSGGFTYEQYF 2 4718 M1 FLU 1.0 1250 NEG 183 4535 7 InfluenzaA M1 GILGFVFTL transitional T cells between effector and memory populations PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*02:01 B2M MHCI -1107 chip0420_177375 7.08 10.8 Chip1 healthy_1 healthy _ 6746 5258 M1 FLU 0.81 1250 M1 173 5085 7 InfluenzaA M1 GILGFVFTL transitional T cells between effector and memory populations PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*02:01 B2M MHCI -1108 chip0420_729848 10.1 7.47 Chip1 T1D_2 T1D TGTGCAGAGAGTACTTCGGGAGGAAAGCTTATCTTC CAESTSGGKLIF TRAV5*01 TRAJ23*01 26.0 2076.0 TGCAGCGTGGGGACAGGGGGAACTAATGAAAAACTGTTTTTT CSVGTGGTNEKLFF TRBV29-1*01 TRBJ1-4*01 57.0 2819.0 CAESTSGGKLIF_CSVGTGGTNEKLFF 107 4651 EBV-BLMF1 EBV 0.62 2531 NEG 174 4477 10 EBV BLMF1 GLCTLVAML effector memory T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*02:01 B2M MHCI -1109 chip0420_648038 8.27 9.6 Chip1 T1D_2 T1D _ 6746 4511 EBV-BLMF1 EBV 0.64 2531 NEG 200 4311 8 EBV BLMF1 GLCTLVAML effector memory T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*02:01 B2M MHCI -1110 chip0420_508763 13.29 11.0 Chip1 T1D_2 T1D _ 6746 3185 EBV-BRLF1 EBV 0.75 1264 NEG 184 3001 9 EBV BRLF1 YVLDHLIVV effector memory T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*02:01 B2M MHCI -1111 chip0420_182469 15.11 11.32 Chip1 T1D_2 T1D TGTGCAGCAAGTATAGAGTTATGGAGGAAGCCAAGGAAATCTCATCTTT CAASIELW??aGSQGNLIF TRAV13-1*01 TRAJ42*01 12.0 213.0 CAASIELW??aGSQGNLIF_ 1 2159 EBV-BRLF1 EBV 0.69 1264 NEG 184 1975 12 EBV BRLF1 YVLDHLIVV effector T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*02:01 B2M MHCI -1112 chip0420_829415 16.59 10.92 Chip1 T1D_2 T1D TGCGCCAGCAGGACGGGGGCCGGGGATACGCAGTATTTT CASRTGAGDTQYF TRBV10-2*01 TRBJ2-3*01 9.0 357.0 _CASRTGAGDTQYF 1 2829 EBV-BLMF1 EBV 0.83 2531 NEG 178 2651 12 EBV BLMF1 GLCTLVAML effector T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*02:01 B2M MHCI -1113 chip0420_341360 -3.02 11.12 Chip1 T1D_1 T1D TGTGCAATGAGCTTGGCTAACTTTGGAAATGAGAAATTAACCTTT CAMSLANFGNEKLTF TRAV12-3*01 TRAJ48*01 1.0 42.0 TGTGCCAGCAGCCCAGACAGGCGGCCTGGAGAGAGCCAGTACTTC CASSPDRRPGESQYF TRBV7-2*01,TRBV7-8*01 TRBJ2-5*01 4.0 75.0 CAMSLANFGNEKLTF_CASSPDRRPGESQYF 1 4472 PGT-178 PGT 0.67 1480 PGT-178 184 4288 4 HomoSapiens PGT LLAGIGTVPI Naive T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*02:01 B2M MHCI -1114 chip0420_861866 10.79 10.68 Chip1 T1D_1 T1D _ 6746 4032 EBV-BLMF1 EBV 0.86 2531 EBV-BLMF1 191 3841 9 EBV BLMF1 GLCTLVAML effector memory T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*02:01 B2M MHCI -1115 chip0420_84217 11.03 10.69 Chip1 healthy_2 healthy TGCAGCGTCGGCTCCAGGGGAACTAATGAAAAACTGTTTTTT CSVGSRGTNEKLFF TRBV29-1*01 TRBJ1-4*01 4.0 109.0 _CSVGSRGTNEKLFF 283 3032 EBV-BLMF1 EBV 0.41 2531 NEG 154 2878 9 EBV BLMF1 GLCTLVAML effector memory T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*02:01 B2M MHCI -1116 chip0420_798430 7.08 13.72 Chip1 T1D_1 T1D TGTGCCAGTAGTAGTAGGAGCACAGATACGCAGTATTTT CASSSRSTDTQYF TRBV19*01 TRBJ2-3*01 44.0 2016.0 _CASSSRSTDTQYF 6 3782 M1 FLU 0.78 1250 M1 173 3609 7 InfluenzaA M1 GILGFVFTL transitional T cells between effector and memory populations PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*02:01 B2M MHCI -1117 chip0420_39171 11.34 7.38 Chip1 T1D_2 T1D TGTGCCGTGAAGGACACCGACAAGCTCATCTTT CAVKDTDKLIF TRAV8-1*01 TRAJ34*01 5.0 781.0 CAVKDTDKLIF_ 56 3743 EBV-BRLF1 EBV 0.88 1264 EBV-BRLF1 191 3552 10 EBV BRLF1 YVLDHLIVV effector memory T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*02:01 B2M MHCI -1118 chip0420_595347 9.85 7.32 Chip1 T1D_1 T1D TGTGCCAGCAGCCCAGTTAGCGGGTCAACCTACGAGCAGTACTTC CASSPVSGSTYEQYF TRBV3-1*01 TRBJ2-7*01 18.0 1001.0 _CASSPVSGSTYEQYF 80 6475 EBV-BLMF1 EBV 0.83 2531 EBV-BLMF1 179 6296 10 EBV BLMF1 GLCTLVAML effector memory T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*02:01 B2M MHCI -1119 chip0420_594560 6.8 12.39 Chip1 T1D_1 T1D TGTGCTGTGCCCCTGGGGGGTTTTCTGGTGGCTACACTAAGCTGATTTTT CAVPLGGFc?tGGYTKLIF TRAV20*01 TRAJ4*01 32.0 2206.0 CAVPLGGFc?tGGYTKLIF_ 1 3769 M1 FLU 0.93 1250 NEG 167 3602 7 InfluenzaA M1 GILGFVFTL transitional T cells between effector and memory populations PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*02:01 B2M MHCI -1120 chip0420_124823 5.98 13.83 Chip1 T1D_1 T1D _ 6746 3861 M1 FLU 0.72 1250 M1 185 3676 7 InfluenzaA M1 GILGFVFTL transitional T cells between effector and memory populations PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*02:01 B2M MHCI -1121 chip0420_250685 9.24 8.94 Chip1 T1D_1 T1D TGTGCCAGCAGTGACGGTCGGGTCCACCCGGGGACCCAGTACTTC CASSDGRVHPGTQYF TRBV2*01 TRBJ2-5*01 45.0 1755.0 _CASSDGRVHPGTQYF 24 5568 EBV-BLMF1 EBV 0.62 2531 NEG 158 5410 8 EBV BLMF1 GLCTLVAML effector memory T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*02:01 B2M MHCI -1122 chip0420_439891 12.07 7.52 Chip1 T1D_2 T1D TGTGCTTCCCTAACCCCGGGGGCTTCCCCGATAATCTTT CASLTPGASPIIF TRAV8-6*01 TRAJ3*01 28.0 2098.0 TGTGCCAGCAGCTCGGGACTAGTCGCCCCCGGGGAGCTGTTTTTT CASSSGLVAPGELFF TRBV2*01 TRBJ2-2*01 93.0 6179.0 CASLTPGASPIIF_CASSSGLVAPGELFF 1 2677 EBV-BLMF1 EBV 0.5 2531 NEG 188 2489 10 EBV BLMF1 GLCTLVAML effector memory T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*02:01 B2M MHCI -1123 chip0420_236278 5.37 8.71 Chip1 T1D_1 T1D TGTGCCACTTTTCCGGACGGCTCCTACGAGCAGTACTTC CATFPDGSYEQYF TRBV28*01 TRBJ2-7*01 74.0 5709.0 _CATFPDGSYEQYF 6 4648 EBV-LMP1-1 EBV 1.0 237 EBV-LMP1-1 163 4485 6 EBV LMP1 YLLEMLWRL central memory T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*02:01 B2M MHCI -1124 chip0420_220592 9.05 9.02 Chip1 T1D_1 T1D TGTGCCAGCAGCCAAAGCCCGGGTGGTACGCAGTATTTT CASSQSPGGTQYF TRBV14*01 TRBJ2-3*01 10.0 572.0 _CASSQSPGGTQYF 94 2878 EBV-BLMF1 EBV 0.55 2531 NEG 184 2694 8 EBV BLMF1 GLCTLVAML effector memory T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*02:01 B2M MHCI -1125 chip0420_733602 8.65 9.9 Chip1 T1D_1 T1D TGCATCCTGAGCCGCTATGGAGGAAGCCACGGACATCTCATCTTT CILSRYGGSHGHLIF TRAV26-2*01 TRAJ42*01 8.0 341.0 TGTGCCAGCAGCCCAGTTAGCGGGTCAACCTACGAGCAGTACTTC CASSPVSGSTYEQYF TRBV3-1*01 TRBJ2-7*01 6.0 250.0 CILSRYGGSHGHLIF_CASSPVSGSTYEQYF 1 7084 EBV-BLMF1 EBV 0.9 2531 EBV-BLMF1 195 6889 8 EBV BLMF1 GLCTLVAML effector memory T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*02:01 B2M MHCI -1126 chip0420_657955 13.48 13.11 Chip1 T1D_2 T1D TGTGCCAGCAGTTCGATGTATGGCTACACCTTC CASSSMYGYTF TRBV6-2*01,TRBV6-3*01 TRBJ1-2*01 49.0 3681.0 _CASSSMYGYTF 1 1878 EBV-BRLF1 EBV 0.8 1264 NEG 167 1711 12 EBV BRLF1 YVLDHLIVV effector T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*02:01 B2M MHCI -1127 chip0420_549346 -2.28 9.0 Chip1 T1D_1 T1D TGTGCAATGATAAGATCTAACTTTGGAAATGAGAAATTAACCTTT CAMIRSNFGNEKLTF TRAV12-3*01 TRAJ48*01 68.0 2249.0 TGTGCCAGCAGCAAATACGGGACAGGTCGGGACACTGAAGCTTTCTTT CASSKYGTGRDTEAFF TRBV11-1*01 TRBJ1-1*01 66.0 2240.0 CAMIRSNFGNEKLTF_CASSKYGTGRDTEAFF 1 6282 PGT-178 PGT 0.85 1480 PGT-178 160 6122 3 HomoSapiens PGT LLAGIGTVPI Naive T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*02:01 B2M MHCI -1128 chip0420_884533 12.43 10.05 Chip1 T1D_2 T1D TGTGTGGTGAACGGGAAGGATAGCAGCTATAAATTGATCTCC CVVNGKDSSYKLIS TRAV12-1*01 TRAJ12*01 31.0 1750.0 TGTGCCAGCAGTGGAGGGGCGGTCGCGCCGAGTGAGCAGTTCTTC CASSGGAVAPSEQFF TRBV2*01 TRBJ2-1*01 72.0 4672.0 CVVNGKDSSYKLIS_CASSGGAVAPSEQFF 1 3112 EBV-BLMF1 EBV 0.62 2531 NEG 187 2925 9 EBV BLMF1 GLCTLVAML effector memory T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*02:01 B2M MHCI -1129 chip0420_512597 10.7 9.93 Chip1 T1D_1 T1D TGTGCCAGCAGTGAGGCATTTCCAGCGGACAATGAGCAGTTCTTC CASSEAFPADNEQFF TRBV6-4*01 TRBJ2-1*01 33.0 2039.0 _CASSEAFPADNEQFF 1 5193 EBV-BRLF1 EBV 0.57 1264 NEG 170 5023 9 EBV BRLF1 YVLDHLIVV effector memory T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*02:01 B2M MHCI -1130 chip0420_610011 15.47 9.3 Chip1 T1D_2 T1D TGTGTGGTGAACGGCAGGGATAGCAGCTATAAATTGATCTTC CVVNGRDSSYKLIF TRAV12-1*01 TRAJ12*01 57.0 2089.0 TGTGCTTCCCTAACCCCGGGGGCTTCCAAGATAACCTTT CASLTPGASKITF TRAV8-6*01 TRAJ3*01 49.0 4384.0 0.43 TGTGCCAGCAGCTCGGGACTAGTCGCCCCCGGGGAGCTGTTTTTT CASSSGLVAPGELFF TRBV2*01 TRBJ2-2*01 49.0 2919.0 CVVNGRDSSYKLIF_CASSSGLVAPGELFF 98 2929 EBV-BLMF1 EBV 0.5 2531 NEG 169 2760 12 EBV BLMF1 GLCTLVAML effector T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*02:01 B2M MHCI -1131 chip0420_526427 10.4 11.26 Chip1 T1D_2 T1D TGCAGCGTGGGGACAGGGGGAACTAATGAAAAACTGTTTTTT CSVGTGGTNEKLFF TRBV29-1*01 TRBJ1-4*01 125.0 6284.0 _CSVGTGGTNEKLFF 638 2966 EBV-BLMF1 EBV 0.6 2531 NEG 158 2808 9 EBV BLMF1 GLCTLVAML effector memory T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*02:01 B2M MHCI -1132 chip0420_204435 12.29 6.57 Chip1 T1D_2 T1D TGCGCCAGCAGAGCGGGAGCCGGGGATACGCAGTATTTT CASRAGAGDTQYF TRBV10-2*01 TRBJ2-3*01 38.0 2048.0 _CASRAGAGDTQYF 59 3729 EBV-BLMF1 EBV 0.85 2531 NEG 210 3519 10 EBV BLMF1 GLCTLVAML effector memory T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*02:01 B2M MHCI -1133 chip0420_15956 13.3 7.6 Chip1 T1D_1 T1D TGTGCCAGCAGTGAGGCATTTCTAGCGGACAATGAGCAGTTCTTC CASSEAFLADNEQFF TRBV6-4*01 TRBJ2-1*01 17.0 915.0 _CASSEAFLADNEQFF 6 2147 EBV-BRLF1 EBV 0.76 1264 NEG 185 1962 10 EBV BRLF1 YVLDHLIVV effector memory T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*02:01 B2M MHCI -1134 chip0420_739558 -2.71 9.5 Chip1 T1D_2 T1D _ 6746 5361 PGT-178 PGT 0.84 1480 PGT-178 168 5193 2 HomoSapiens PGT LLAGIGTVPI Naive T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*02:01 B2M MHCI -1135 chip0420_319274 9.1 12.08 Chip1 T1D_1 T1D _ 6746 2894 EBV-BLMF1 EBV 0.95 2531 EBV-BLMF1 151 2743 7 EBV BLMF1 GLCTLVAML transitional T cells between effector and memory populations PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*02:01 B2M MHCI -1136 chip0420_16453 -3.03 9.44 Chip1 T1D_1 T1D TGCAGTGCTGGCCGGCCCGGGGTGGACACTGAAGCTTTCTTT CSAGRPGVDTEAFF TRBV20-1*01 TRBJ1-1*01 8.0 457.0 _CSAGRPGVDTEAFF 1 6063 PGT-178 PGT 0.58 1480 PGT-178 163 5900 2 HomoSapiens PGT LLAGIGTVPI Naive T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*02:01 B2M MHCI -1137 chip0420_712320 11.03 6.87 Chip1 T1D_2 T1D TGTGCCAGCAGCTCGGGTCTAGTCGCCCCCGGGGAGCTGTTTTTT CASSSGLVAPGELFF TRBV2*01 TRBJ2-2*01 5.0 83.0 _CASSSGLVAPGELFF 133 4883 EBV-BLMF1 EBV 0.8 2531 NEG 222 4661 10 EBV BLMF1 GLCTLVAML effector memory T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*02:01 B2M MHCI -1138 chip0420_200269 12.63 7.46 Chip1 T1D_2 T1D TGTGCCAGCAGCTCGGGACTAGTCGCCCCCGGGGAGCTGTTTTTT CASSSGLVAPGELFF TRBV2*01 TRBJ2-2*01 26.0 1523.0 _CASSSGLVAPGELFF 133 2766 EBV-BLMF1 EBV 0.86 2531 NEG 172 2594 10 EBV BLMF1 GLCTLVAML effector memory T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*02:01 B2M MHCI -1139 chip0420_214680 12.88 6.2 Chip1 T1D_1 T1D TGTGTTGTGACCTCCTCCGGTTTTCAGCTGGCCAGCAGCTGCTCTTT CVVTSSGtt?SAGQQLLF TRAV8-2*01 TRAJ16*01 8.0 460.0 CVVTSSGtt?SAGQQLLF_ 1 4958 EBV-BLMF1 EBV 1.0 2531 EBV-BLMF1 192 4766 10 EBV BLMF1 GLCTLVAML effector memory T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*02:01 B2M MHCI -1140 chip0420_31521 15.44 11.95 Chip1 T1D_1 T1D TGTGCTGTGAGTGATACCGGCCCGCACCTCCAAATACATCTTT CAVSDTG??cRTSKYIF TRAV8-6*01 TRAJ40*01 37.0 2247.0 TGTGCCAGCAGTCCGGCCCGAACTAGCTCCTACAATGAGCAGTTCTTC CASSPARTSSYNEQFF TRBV27*01 TRBJ2-1*01 90.0 2741.0 CAVSDTG??cRTSKYIF_CASSPARTSSYNEQFF 1 1563 EBV-BRLF1 EBV 0.75 1264 NEG 176 1387 12 EBV BRLF1 YVLDHLIVV effector T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*02:01 B2M MHCI -1141 chip0420_608376 -2.78 9.29 Chip1 T1D_2 T1D TGGGCAATGAGCATATCTAACTTTGGAAGTGCGACCTTTCCCTTT WAMSISNFGSATFPF TRAV12-3*01 TRAJ48*01 13.0 414.0 TGTGCCGGCGGCCCGCGGCTCCCCCGAGACTACTATGGCTACACCTTC CAGGPRLPRDYYGYTF TRBV6-1*01 TRBJ1-2*01 4.0 17.0 WAMSISNFGSATFPF_CAGGPRLPRDYYGYTF 1 5951 PGT-178 PGT 0.81 1480 PGT-178 172 5779 2 HomoSapiens PGT LLAGIGTVPI Naive T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*02:01 B2M MHCI -1142 chip0420_482609 12.81 7.13 Chip1 T1D_2 T1D TGCAGCGTGGGGACAGGGGGAACTAATGAAAAACTGTTTTTT CSVGTGGTNEKLFF TRBV29-1*01 TRBJ1-4*01 136.0 5124.0 _CSVGTGGTNEKLFF 638 2829 EBV-BLMF1 EBV 0.6 2531 NEG 204 2625 10 EBV BLMF1 GLCTLVAML effector memory T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*02:01 B2M MHCI -1143 chip0420_121309 12.34 8.62 Chip1 T1D_2 T1D TGCAGCGTGGGGACAGGGGGAACTAATGAAAAACTGTTTTTT CSVGTGGTNEKLFF TRBV29-1*01 TRBJ1-4*01 44.0 2730.0 _CSVGTGGTNEKLFF 638 2605 EBV-BLMF1 EBV 0.67 2531 NEG 171 2434 10 EBV BLMF1 GLCTLVAML effector memory T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*02:01 B2M MHCI -1144 chip0420_434805 -1.86 7.43 Chip1 T1D_1 T1D TGCAGTGCTAGCAGACAGGGGGCTCGGGCTGAAGCTTTCTTT CSASRQGARAEAFF TRBV20-1*01 TRBJ1-1*01 3.0 135.0 _CSASRQGARAEAFF 1 5328 GAD65-114-122 GAD65 0.72 63 GAD65-114-122 189 5139 3 HomoSapiens GAD65 VMNILLQYV Naive T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*02:01 B2M MHCI -1145 chip0420_191275 15.42 9.24 Chip1 T1D_2 T1D TGCAGCGTGGGGACAGGGGGAACTAATGAAAAACTGTTTTTT CSVGTGGTNEKLFF TRBV29-1*01 TRBJ1-4*01 87.0 4694.0 _CSVGTGGTNEKLFF 638 2056 EBV-BLMF1 EBV 0.6 2531 NEG 169 1887 12 EBV BLMF1 GLCTLVAML effector T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*02:01 B2M MHCI -1146 chip0420_783625 10.26 9.95 Chip1 T1D_2 T1D TGTGCAGCATACGCAGGCAACATGCTCACCTTT CAAYAGNMLTF TRAV29/DV5*01 TRAJ39*01 2.0 126.0 CAAYAGNMLTF_ 8 3461 EBV-BLMF1 EBV 0.83 2531 NEG 184 3277 9 EBV BLMF1 GLCTLVAML effector memory T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*02:01 B2M MHCI -1147 chip0420_731583 16.13 10.87 Chip1 T1D_1 T1D _ 6746 1979 EBV-BLMF1 EBV 0.67 2531 NEG 183 1796 12 EBV BLMF1 GLCTLVAML effector T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*02:01 B2M MHCI -1148 chip0420_354731 -3.28 8.38 Chip1 T1D_1 T1D TGTGTGGTGAACAAGGGCGACTACAAGCTCAGCTTT CVVNKGDYKLSF TRAV12-1*01 TRAJ20*01 28.0 2077.0 TGTGCCAACAGTTTTTTGGGACAGGGAGCCCTGGACACTGAAGCTTTCTTT CANSFLGQGALDTEAFF TRBV28*01 TRBJ1-1*01 21.0 626.0 CVVNKGDYKLSF_CANSFLGQGALDTEAFF 1 6925 ROTA-VP3 ROTA 0.53 41 NEG 163 6762 2 RotavirusA VP3 YLLPGWKL Naive T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*02:01 B2M MHCI -1149 chip0420_862788 -3.1 12.4 Chip1 T1D_1 T1D _ 6746 4545 PTPRN-172-180 PTPRN 0.78 4 PTPRN-172-180 158 4387 1 HomoSapiens PTPRN SLSPLQAEL Naive T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*02:01 B2M MHCI -1150 chip0420_731219 13.14 8.78 Chip1 T1D_2 T1D TGCGCCAGCAGACAGGGGGATGGAGATACGCAGTATTTT CASRQGDGDTQYF TRBV10-2*01 TRBJ2-3*01 48.0 2181.0 _CASRQGDGDTQYF 3 2240 EBV-BLMF1 EBV 0.83 2531 NEG 172 2068 10 EBV BLMF1 GLCTLVAML effector memory T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*02:01 B2M MHCI -1151 chip0420_146781 -1.28 6.69 Chip1 T1D_1 T1D _ 6746 7852 EBV-BRLF1 EBV 0.83 1264 NEG 191 7661 3 EBV BRLF1 YVLDHLIVV Naive T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*02:01 B2M MHCI -1152 chip0420_35812 10.05 8.43 Chip1 T1D_2 T1D TGCAGCGTGGGGACAGGGGGAACTAATGAAAAACTGTTTTTT CSVGTGGTNEKLFF TRBV29-1*01 TRBJ1-4*01 88.0 3078.0 _CSVGTGGTNEKLFF 638 3321 EBV-BLMF1 EBV 0.67 2531 NEG 175 3146 8 EBV BLMF1 GLCTLVAML effector memory T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*02:01 B2M MHCI -1153 chip0420_508751 10.84 10.67 Chip1 T1D_2 T1D TGTGCTTCCCTAACCCCGGGGGCTTCCAAGATAATCTTT CASLTPGASKIIF TRAV8-6*01 TRAJ3*01 31.0 2707.0 TGTGCCAGCAGCTCGGGACTAGTCGCCCCCGGGGAGCTGTTTTTT CASSSGLVAPGELFF TRBV2*01 TRBJ2-2*01 30.0 1508.0 CASLTPGASKIIF_CASSSGLVAPGELFF 38 4358 EBV-BLMF1 EBV 0.58 2531 NEG 183 4175 9 EBV BLMF1 GLCTLVAML effector memory T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*02:01 B2M MHCI -1154 chip0420_445101 8.88 8.59 Chip1 T1D_1 T1D _ 6746 5413 EBV-BLMF1 EBV 0.83 2531 EBV-BLMF1 182 5231 8 EBV BLMF1 GLCTLVAML effector memory T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*02:01 B2M MHCI -1155 chip0420_321696 7.69 14.14 Chip1 T1D_1 T1D TGTGCTGTGAGTGATCGGGATGGAGGCTTCAAAACTATCTTT CAVSDRDGGFKTIF TRAV8-4*01 TRAJ9*01 26.0 1044.0 CAVSDRDGGFKTIF_ 6 2462 M1 FLU 0.73 1250 NEG 188 2274 7 InfluenzaA M1 GILGFVFTL transitional T cells between effector and memory populations PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*02:01 B2M MHCI -1156 chip0420_173393 10.41 11.34 Chip1 T1D_2 T1D TGTGCCGTGAAGGACACCGACAAGCTCATCTTT CAVKDTDKLIF TRAV8-1*01 TRAJ34*01 29.0 2346.0 CAVKDTDKLIF_ 56 3017 EBV-BRLF1 EBV 0.95 1264 EBV-BRLF1 147 2870 9 EBV BRLF1 YVLDHLIVV effector memory T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*02:01 B2M MHCI -1157 chip0420_800805 10.9 10.67 Chip1 T1D_1 T1D TGTGCCACCCAACAGGGGAGGGACAGTCAGCCCCAGCATTTT CATQQGRDSQPQHF TRBV28*01 TRBJ1-5*01 149.0 8357.0 _CATQQGRDSQPQHF 52 4621 EBV-BLMF1 EBV 0.8 2531 NEG 164 4457 9 EBV BLMF1 GLCTLVAML effector memory T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*02:01 B2M MHCI -1158 chip0420_791537 6.44 11.65 Chip1 T1D_1 T1D TGTGCCAGTAGTATAAGATCCACAGATACGCAGTATTTT CASSIRSTDTQYF TRBV19*01 TRBJ2-3*01 38.0 1891.0 _CASSIRSTDTQYF 6 4730 M1 FLU 0.94 1250 M1 200 4530 7 InfluenzaA M1 GILGFVFTL transitional T cells between effector and memory populations PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*02:01 B2M MHCI -1159 chip0420_351667 12.69 7.15 Chip1 T1D_2 T1D _ 6746 2498 EBV-BRLF1 EBV 0.94 1264 EBV-BRLF1 181 2317 10 EBV BRLF1 YVLDHLIVV effector memory T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*02:01 B2M MHCI -1160 chip0420_843378 13.55 13.08 Chip1 T1D_2 T1D TGTGCCAGCAGTTACATGTCCGGCGAAGCTTTCTTT CASSYMSGEAFF TRBV6-2*01,TRBV6-3*01 TRBJ1-1*01 7.0 278.0 _CASSYMSGEAFF 8 1530 EBV-BRLF1 EBV 0.97 1264 EBV-BRLF1 170 1360 12 EBV BRLF1 YVLDHLIVV effector T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*02:01 B2M MHCI -1161 chip0420_510908 8.95 9.08 Chip1 T1D_1 T1D TGTGCCAGCAGCCCAGTTAGCGGGTCAACCTACGAGCAGTACTTC CASSPVSGSTYEQYF TRBV3-1*01 TRBJ2-7*01 47.0 2587.0 _CASSPVSGSTYEQYF 80 3403 EBV-BLMF1 EBV 0.83 2531 EBV-BLMF1 185 3218 8 EBV BLMF1 GLCTLVAML effector memory T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*02:01 B2M MHCI -1162 chip0420_684664 9.52 9.66 Chip1 T1D_1 T1D TGTGCCAGCAGCCCAGTTAGCGGGTCAACCTACGAGCAGTACTTC CASSPVSGSTYEQYF TRBV3-1*01 TRBJ2-7*01 31.0 2084.0 _CASSPVSGSTYEQYF 80 4867 EBV-BLMF1 EBV 0.74 2531 EBV-BLMF1 224 4643 8 EBV BLMF1 GLCTLVAML effector memory T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*02:01 B2M MHCI -1163 chip0420_33863 8.32 9.79 Chip1 T1D_2 T1D _ 6746 4429 EBV-BLMF1 EBV 0.64 2531 NEG 182 4247 8 EBV BLMF1 GLCTLVAML effector memory T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*02:01 B2M MHCI -1164 chip0420_518271 16.22 10.12 Chip1 T1D_1 T1D TGCATCCTCTTTATGCTGGTGGTACTAGCTATGGAAAGCTGACATTT CILFMLVgt?TSYGKLTF TRAV26-2*01 TRAJ52*01 13.0 1266.0 TGTGCCAGCAGTTCCGGAGGGAACGTGGATACGCAGTATTTT CASSSGGNVDTQYF TRBV7-3*01 TRBJ2-3*01 44.0 2431.0 CILFMLVgt?TSYGKLTF_CASSSGGNVDTQYF 1 2666 EBV-BLMF1 EBV 0.71 2531 NEG 167 2499 12 EBV BLMF1 GLCTLVAML effector T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*02:01 B2M MHCI -1165 chip0420_302360 11.93 10.55 Chip1 T1D_1 T1D TGTGCCAGCAGTTCCGGAGGGAACGTGGATACGCAGTATTTT CASSSGGNVDTQYF TRBV7-3*01 TRBJ2-3*01 7.0 193.0 _CASSSGGNVDTQYF 47 3468 EBV-BLMF1 EBV 0.67 2531 NEG 189 3279 9 EBV BLMF1 GLCTLVAML effector memory T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*02:01 B2M MHCI -1166 chip0420_771166 15.63 9.09 Chip1 T1D_1 T1D TGTGCCAGCAGTCCGGACCAAACTAGCTCCTACAATGAGCAGTTCTTC CASSPDQTSSYNEQFF TRBV27*01 TRBJ2-1*01 38.0 2355.0 _CASSPDQTSSYNEQFF 47 2311 EBV-BRLF1 EBV 0.77 1264 EBV-BRLF1 214 2097 12 EBV BRLF1 YVLDHLIVV effector T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*02:01 B2M MHCI -1167 chip0420_683756 4.82 10.63 Chip1 T1D_1 T1D TGTGCCAGTAGTACACCCCGACCACAGCCCTCTGGGGCCAACGTCCTGACTTTC CASSTPRPQPSGANVLTF TRBV19*01 TRBJ2-6*01 3.0 111.0 _CASSTPRPQPSGANVLTF 1 2798 HCVNS4B-1807-1816 HCV 1.0 74 HCVNS4B-1807-1816 169 2629 6 HCV NS4B LLFNILGGWV central memory T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*02:01 B2M MHCI -1168 chip0420_853278 15.41 10.0 Chip1 T1D_1 T1D TGTGCAGCGAGGGGCAAATCAACCTTT CAARGKSTF TRAV23/DV6*01 TRAJ27*01 13.0 1784.0 CAARGKSTF_ 1 1981 EBV-BLMF1 EBV 1.0 2531 EBV-BLMF1 167 1814 12 EBV BLMF1 GLCTLVAML effector T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*02:01 B2M MHCI -1169 chip0420_139325 13.51 11.61 Chip1 T1D_2 T1D TGTGCCAGCAGCGTAGGGGTTCTTAGCGCCGGGGAGCTGTTTTTT CASSVGVLSAGELFF TRBV9*01 TRBJ2-2*01 25.0 1137.0 _CASSVGVLSAGELFF 3 2388 EBV-BLMF1 EBV 0.78 2531 NEG 196 2192 9 EBV BLMF1 GLCTLVAML effector memory T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*02:01 B2M MHCI -1170 chip0420_231010 5.73 12.02 Chip1 T1D_1 T1D TGTGCCAGTAGTATAGGGTCCTATGGCTACACCTTC CASSIGSYGYTF TRBV19*01 TRBJ1-2*01 20.0 1189.0 _CASSIGSYGYTF 7 6137 M1 FLU 0.93 1250 M1 170 5967 7 InfluenzaA M1 GILGFVFTL transitional T cells between effector and memory populations PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*02:01 B2M MHCI -1171 chip0420_230107 -2.02 7.42 Chip1 T1D_2 T1D TGTGCCGCGGACTATGATCAGAATTTTGTCTTT CAADYDQNFVF TRAV12-1*01 TRAJ26*01 20.0 2045.0 CAADYDQNFVF_ 1 6326 PGT-178 PGT 0.65 1480 NEG 165 6161 2 HomoSapiens PGT LLAGIGTVPI Naive T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*02:01 B2M MHCI -1172 chip0420_157070 -4.11 11.3 Chip1 T1D_1 T1D TGCAGTGCTACGCCGGGGACAGGGGTCAATGAGCAGTTCTTC CSATPGTGVNEQFF TRBV20-1*01 TRBJ2-1*01 32.0 2056.0 _CSATPGTGVNEQFF 1 4467 PGT-178 PGT 0.76 1480 PGT-178 145 4322 1 HomoSapiens PGT LLAGIGTVPI Naive T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*02:01 B2M MHCI -1173 chip0420_678455 10.02 10.57 Chip1 T1D_2 T1D TGTGCCAGCAGTTTTAAGAACACTGAAGCTTTCTTT CASSFKNTEAFF TRBV27*01 TRBJ1-1*01 34.0 1961.0 _CASSFKNTEAFF 3 2595 EBV-BLMF1 EBV 0.6 2531 NEG 168 2427 9 EBV BLMF1 GLCTLVAML effector memory T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*02:01 B2M MHCI -1174 chip0420_588776 10.79 9.34 Chip1 T1D_1 T1D TGCAGCGTCGGCTCCAGGGGAACTAATGAAAAACTGTTTTTT CSVGSRGTNEKLFF TRBV29-1*01 TRBJ1-4*01 45.0 2587.0 _CSVGSRGTNEKLFF 283 3470 EBV-BLMF1 EBV 0.62 2531 NEG 193 3277 9 EBV BLMF1 GLCTLVAML effector memory T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*02:01 B2M MHCI -1175 chip0420_504245 5.57 13.08 Chip1 T1D_1 T1D TGTGCAATGAGAGAGGGAGTCGTGGAATATGGAAACAAACTGGTCTTT CAMREGVVEYGNKLVF TRAV14/DV4*01 TRAJ47*01 82.0 1920.0 TGTGCCCGTAGTTTTTGGAGCCCGGGAGCTGTTTGTT CARSFW??aARELFV TRBV19*01 TRBJ2-2*01 6.0 526.0 CAMREGVVEYGNKLVF_CARSFW??aARELFV 1 5796 M1 FLU 0.69 1250 M1 183 5613 7 InfluenzaA M1 GILGFVFTL transitional T cells between effector and memory populations PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*02:01 B2M MHCI -1176 chip0420_294476 16.18 10.93 Chip1 T1D_1 T1D TGCGGCCCCGCGGAACCTAACGACTACAAGCTCAGCTTT CGPAEPNDYKLSF TRAV30*01 TRAJ20*01 30.0 2061.0 CGPAEPNDYKLSF_ 4 1954 EBV-BLMF1 EBV 0.5 2531 NEG 180 1774 12 EBV BLMF1 GLCTLVAML effector T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*02:01 B2M MHCI -1177 chip0420_140266 15.43 10.9 Chip1 T1D_1 T1D TGTGCTCTCTTTAACACCGACAAGCTCATCTTT CALFNTDKLIF TRAV9-2*01 TRAJ34*01 34.0 3025.0 TGTGCCAGCAGCCCAGTTAGCGGGTCAACCTACGAGCAGTACTTC CASSPVSGSTYEQYF TRBV3-1*01 TRBJ2-7*01 10.0 460.0 CALFNTDKLIF_CASSPVSGSTYEQYF 1 2107 EBV-BLMF1 EBV 0.86 2531 NEG 188 1919 12 EBV BLMF1 GLCTLVAML effector T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*02:01 B2M MHCI -1178 chip0420_814520 7.92 11.27 Chip1 T1D_2 T1D TGCCTCGTGCGTCGAGAGGCGATCTAACTTTGGAAATGAGAAATTAACCTTT CLVRREAIta??acFGNEKLTF TRAV4*01 TRAJ48*01 67.0 2008.0 CLVRREAIta??acFGNEKLTF_ 1 4761 EBV-BRLF1 EBV 0.92 1264 EBV-BRLF1 161 4600 7 EBV BRLF1 YVLDHLIVV transitional T cells between effector and memory populations PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*02:01 B2M MHCI -1179 chip0420_558951 -2.57 12.09 Chip1 T1D_1 T1D TGTGCTGTGCAGGCAGGGAGCAACACAGGCAAACTAATCTTT CAVQAGSNTGKLIF TRAV20*01 TRAJ37*01 5.0 596.0 TGCAGCGTTGAATTTCCCGACTCCTACGAGCAGTACTTC CSVEFPDSYEQYF TRBV29-1*01 TRBJ2-7*01 67.0 5846.0 CAVQAGSNTGKLIF_CSVEFPDSYEQYF 1 4909 EBV-LMP1-1 EBV 0.5 237 NEG 176 4733 1 EBV LMP1 YLLEMLWRL Naive T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*02:01 B2M MHCI -1180 chip0420_757170 14.02 7.42 Chip1 T1D_2 T1D TGTGCAGAGAGTACTTCGGGAGGAAAGCTTATCTTC CAESTSGGKLIF TRAV5*01 TRAJ23*01 4.0 405.0 TGCAGCGTGGGGACAGGGGGAACTAATGAAAAACTGTTTTTT CSVGTGGTNEKLFF TRBV29-1*01 TRBJ1-4*01 123.0 5232.0 CAESTSGGKLIF_CSVGTGGTNEKLFF 107 3107 EBV-BLMF1 EBV 0.5 2531 NEG 197 2910 10 EBV BLMF1 GLCTLVAML effector memory T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*02:01 B2M MHCI -1181 chip0420_668841 13.13 8.18 Chip1 T1D_2 T1D TGCAGCGTGGGGACAGGGGGAACTAATGAAAAACTGTTTTTT CSVGTGGTNEKLFF TRBV29-1*01 TRBJ1-4*01 93.0 4577.0 _CSVGTGGTNEKLFF 638 2000 EBV-BLMF1 EBV 0.55 2531 NEG 194 1806 10 EBV BLMF1 GLCTLVAML effector memory T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*02:01 B2M MHCI -1182 chip0420_78401 10.64 7.58 Chip1 T1D_1 T1D _ 6746 4542 EBV-BLMF1 EBV 1.0 2531 EBV-BLMF1 185 4357 10 EBV BLMF1 GLCTLVAML effector memory T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*02:01 B2M MHCI -1183 chip0420_428268 5.63 11.32 Chip1 T1D_2 T1D TGTGCTGTTCTGATGGATAGCAACTATCAGTTAATCTGG CAVLMDSNYQLIW TRAV21*01 TRAJ33*01 26.0 1537.0 CAVLMDSNYQLIW_ 20 4890 EBV-LMP2A EBV 0.98 700 EBV-LMP2A 164 4726 6 EBV LMP2A CLGGLLTMV central memory T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*02:01 B2M MHCI -1184 chip0420_336176 6.02 12.38 Chip1 T1D_1 T1D _ 6746 5861 M1 FLU 0.67 1250 NEG 159 5702 7 InfluenzaA M1 GILGFVFTL transitional T cells between effector and memory populations PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*02:01 B2M MHCI -1185 chip0420_871930 9.91 10.52 Chip1 T1D_1 T1D TGTGCCAGCACACACGGGGGGGTTATCCCAGATACGCAGTATTTT CASTHGGVIPDTQYF TRBV2*01 TRBJ2-3*01 55.0 2350.0 _CASTHGGVIPDTQYF 2 5146 EBV-BLMF1 EBV 0.8 2531 NEG 155 4991 9 EBV BLMF1 GLCTLVAML effector memory T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*02:01 B2M MHCI -1186 chip0420_338893 8.98 9.33 Chip1 T1D_1 T1D TGTGCCAGCAGCCAAAGCCCGGGTGGTACGCAGTATTTT CASSQSPGGTQYF TRBV14*01 TRBJ2-3*01 12.0 621.0 _CASSQSPGGTQYF 94 4513 EBV-BLMF1 EBV 0.6 2531 NEG 183 4330 8 EBV BLMF1 GLCTLVAML effector memory T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*02:01 B2M MHCI -1187 chip0420_668987 8.21 11.4 Chip1 T1D_2 T1D TGCAGCGTGGGGACAGGGGGAACTAATGAAAAACTGTTTTTT CSVGTGGTNEKLFF TRBV29-1*01 TRBJ1-4*01 19.0 807.0 _CSVGTGGTNEKLFF 638 3914 EBV-BLMF1 EBV 0.8 2531 NEG 187 3727 7 EBV BLMF1 GLCTLVAML transitional T cells between effector and memory populations PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*02:01 B2M MHCI -1188 chip0420_800531 15.49 9.88 Chip1 T1D_2 T1D TGTGTGGTGAACGGCAGGGATAGCAGCTATAAATTGATCTTC CVVNGRDSSYKLIF TRAV12-1*01 TRAJ12*01 3.0 310.0 TGTGCCAGCAGCTCGGGACTAGTCGCCCCCGGGGAGCTGTTTTTT CASSSGLVAPGELFF TRBV2*01 TRBJ2-2*01 37.0 2175.0 CVVNGRDSSYKLIF_CASSSGLVAPGELFF 98 2611 EBV-BLMF1 EBV 0.62 2531 NEG 184 2427 12 EBV BLMF1 GLCTLVAML effector T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*02:01 B2M MHCI -1189 chip0420_444638 9.35 8.91 Chip1 T1D_2 T1D TGTGTGGTGAACGGCAGGGATAGCGGCTATAAATTGATCTTC CVVNGRDSGYKLIF TRAV12-1*01 TRAJ12*01 80.0 3862.0 TGTGCCAGCAGCTCGGGACTAGTCGCCCCCGGGGAGCTGTTTTTT CASSSGLVAPGELFF TRBV2*01 TRBJ2-2*01 75.0 3736.0 CVVNGRDSGYKLIF_CASSSGLVAPGELFF 2 5590 EBV-BLMF1 EBV 1.0 2531 NEG 201 5389 8 EBV BLMF1 GLCTLVAML effector memory T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*02:01 B2M MHCI -1190 chip0420_430715 14.76 8.64 Chip1 T1D_2 T1D TGTGCCTTAGGAGGACTGACCTTT CALGGLTF TRAV8-1*01 TRAJ22*01 2.0 22.0 CALGGLTF_ 6 2010 EBV-BRLF1 EBV 0.84 1264 EBV-BRLF1 183 1827 12 EBV BRLF1 YVLDHLIVV effector T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*02:01 B2M MHCI -1191 chip0420_162292 -2.57 10.08 Chip1 T1D_2 T1D TGTGCCGTGACCTGGGGAGGAGGAAACAAACTCACCTCT CAVTWGGGNKLTS TRAV12-2*01 TRAJ10*01 86.0 4090.0 TGCAGTGCTCCGTTGACTAGCGGGATGAACACCGGGGAGCTGTTTTTT CSAPLTSGMNTGELFF TRBV20-1*01 TRBJ2-2*01 30.0 1387.0 CAVTWGGGNKLTS_CSAPLTSGMNTGELFF 1 4199 PGT-178 PGT 0.84 1480 PGT-178 176 4023 3 HomoSapiens PGT LLAGIGTVPI Naive T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*02:01 B2M MHCI -1192 chip0420_118505 9.25 8.97 Chip1 T1D_2 T1D _ 6746 4867 EBV-BRLF1 EBV 0.88 1264 EBV-BRLF1 168 4699 8 EBV BRLF1 YVLDHLIVV effector memory T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*02:01 B2M MHCI -1193 chip0420_872373 6.0 13.78 Chip1 T1D_1 T1D TGTAGTAGCGGGAGTGGATACGAGCAGTTCTTC CSSGSGYEQFF TRBV19*01 TRBJ2-1*01 2.0 154.0 _CSSGSGYEQFF 1 4092 M1 FLU 0.54 1250 M1 164 3928 7 InfluenzaA M1 GILGFVFTL transitional T cells between effector and memory populations PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*02:01 B2M MHCI -1194 chip0420_171321 8.46 12.02 Chip1 T1D_1 T1D _ 6746 4156 PGT-178 PGT 0.71 1480 PGT-178 187 3969 7 HomoSapiens PGT LLAGIGTVPI transitional T cells between effector and memory populations PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*02:01 B2M MHCI -1195 chip0420_340169 14.77 12.46 Chip1 T1D_1 T1D _ 6746 1711 EBV-BLMF1 EBV 0.56 2531 NEG 177 1534 12 EBV BLMF1 GLCTLVAML effector T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*02:01 B2M MHCI -1196 chip0420_137482 11.45 9.76 Chip1 T1D_1 T1D _ 6746 3673 EBV-BLMF1 EBV 0.67 2531 NEG 184 3489 9 EBV BLMF1 GLCTLVAML effector memory T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*02:01 B2M MHCI -1197 chip0420_118546 6.5 10.11 Chip1 T1D_2 T1D TGTGCCAGCAGCTTGGTAGCGGGAGGGCCTGGGGAGACCCAGTACTTC CASSLVAGGPGETQYF TRBV5-6*01 TRBJ2-5*01 8.0 549.0 _CASSLVAGGPGETQYF 1 5731 EBV-BRLF1 EBV 0.94 1264 EBV-BRLF1 152 5579 6 EBV BRLF1 YVLDHLIVV central memory T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*02:01 B2M MHCI -1198 chip0420_482459 7.03 10.38 Chip1 T1D_1 T1D TGCGGCCCAGAGGAACCTAACGACTACAAGCTCAGCTTT CGPEEPNDYKLSF TRAV30*01 TRAJ20*01 37.0 2274.0 TGTGCCAGTAGTAGTAGGAGCACAGATACGCAGTATTTT CASSSRSTDTQYF TRBV19*01 TRBJ2-3*01 19.0 806.0 CGPEEPNDYKLSF_CASSSRSTDTQYF 1 6078 M1 FLU 0.69 1250 M1 193 5885 7 InfluenzaA M1 GILGFVFTL transitional T cells between effector and memory populations PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*02:01 B2M MHCI -1199 chip0420_832195 15.94 11.51 Chip1 T1D_2 T1D TGTGCAATGAGAGAGGGCACGGGCAACTTCAACAAATTTTACTTT CAMREGTGNFNKFYF TRAV14/DV4*01 TRAJ21*01 2.0 175.0 TGTGCCAGCAAGGGGATCGATGGCTACACCTTC CASKGIDGYTF TRBV13*01 TRBJ1-2*01 55.0 4643.0 CAMREGTGNFNKFYF_CASKGIDGYTF 6 1658 EBV-BRLF1 EBV 1.0 1264 EBV-BRLF1 185 1473 12 EBV BRLF1 YVLDHLIVV effector T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*02:01 B2M MHCI -1200 chip0420_604932 6.51 12.78 Chip1 T1D_1 T1D _ 6746 4900 M1 FLU 0.84 1250 M1 162 4738 7 InfluenzaA M1 GILGFVFTL transitional T cells between effector and memory populations PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*02:01 B2M MHCI -1201 chip0420_39900 8.72 8.66 Chip1 T1D_1 T1D _ 6746 6226 EBV-BLMF1 EBV 0.88 2531 EBV-BLMF1 182 6044 8 EBV BLMF1 GLCTLVAML effector memory T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*02:01 B2M MHCI -1202 chip0420_565582 -2.8 12.68 Chip1 T1D_1 T1D _ 6746 3725 ZNT8-16-24 ZNT8 0.48 39 ZNT8-16-24 177 3548 1 HomoSapiens ZNT8 KMYAFTLES Naive T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*02:01 B2M MHCI -1203 chip0420_410248 11.84 7.62 Chip1 T1D_2 T1D TGCAGCGTGGGGACAGGGGGAACTAATGAAAAACTGTTTTTT CSVGTGGTNEKLFF TRBV29-1*01 TRBJ1-4*01 117.0 5122.0 _CSVGTGGTNEKLFF 638 3068 EBV-BLMF1 EBV 0.73 2531 NEG 179 2889 10 EBV BLMF1 GLCTLVAML effector memory T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*02:01 B2M MHCI -1204 chip0420_12655 6.09 10.16 Chip1 T1D_1 T1D TGTGCCAGCAGTTACGCAGGGGGCGCCTATGGCTACACCTTC CASSYAGGAYGYTF TRBV6-5*01 TRBJ1-2*01 20.0 1103.0 _CASSYAGGAYGYTF 2 4390 EBV-LMP2-FLY EBV 0.88 355 EBV-LMP2-FLY 183 4207 6 EBV LMP2 FLYALALLL central memory T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*02:01 B2M MHCI -1205 chip0420_784739 11.4 11.68 Chip1 T1D_1 T1D _ 6746 3186 EBV-BLMF1 EBV 0.71 2531 NEG 175 3011 9 EBV BLMF1 GLCTLVAML effector memory T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*02:01 B2M MHCI -1206 chip0420_505411 -2.26 12.43 Chip1 T1D_1 T1D TGTGCAGGAAGTTTATCTAACTTTGGACATGAGAAATTAACCTTT CAGSLSNFGHEKLTF TRAV12-3*01 TRAJ48*01 70.0 2038.0 CAGSLSNFGHEKLTF_ 1 4476 PGT-178 PGT 0.79 1480 PGT-178 181 4295 4 HomoSapiens PGT LLAGIGTVPI Naive T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*02:01 B2M MHCI -1207 chip0420_253900 15.21 10.36 Chip1 T1D_2 T1D TGCAGCGTGGGGACAGGGGGAACTAATGAAAAACTGTTTTTT CSVGTGGTNEKLFF TRBV29-1*01 TRBJ1-4*01 5.0 70.0 _CSVGTGGTNEKLFF 638 3598 EBV-BLMF1 EBV 0.71 2531 NEG 160 3438 12 EBV BLMF1 GLCTLVAML effector T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*02:01 B2M MHCI -1208 chip0420_172319 9.57 10.35 Chip1 T1D_1 T1D TGTGCCAGCAGCCAAAGCCCGGGTGGTACGCAGTATTTT CASSQSPGGTQYF TRBV14*01 TRBJ2-3*01 17.0 869.0 _CASSQSPGGTQYF 94 6098 EBV-BLMF1 EBV 0.84 2531 EBV-BLMF1 166 5932 9 EBV BLMF1 GLCTLVAML effector memory T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*02:01 B2M MHCI -1209 chip0420_557463 7.95 9.08 Chip1 T1D_2 T1D TGTGCCAGCAGTGAATAGCCAGGGTATCCGCCCCAGCATTTT CASSE*PGYPPQHF TRBV6-1*01 TRBJ1-5*01 29.0 1236.0 _CASSE*PGYPPQHF 1 5865 EBV-BLMF1 EBV 0.67 2531 NEG 173 5692 8 EBV BLMF1 GLCTLVAML effector memory T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*02:01 B2M MHCI -1210 chip0420_363880 10.54 7.19 Chip1 T1D_1 T1D _ 6746 6264 EBV-LMP1-1 EBV 0.89 237 NEG 201 6063 10 EBV LMP1 YLLEMLWRL effector memory T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*02:01 B2M MHCI -1211 chip0420_170931 9.91 10.21 Chip1 T1D_2 T1D TGTGTGGTGAACGGCAGGGATAGCAGCTATAAATTGATCTTC CVVNGRDSSYKLIF TRAV12-1*01 TRAJ12*01 1.0 95.0 TGTGCCAGCAGCTCGGGACTAGTCGCCCCCGGGGAGCTGTTTTTT CASSSGLVAPGELFF TRBV2*01 TRBJ2-2*01 10.0 293.0 CVVNGRDSSYKLIF_CASSSGLVAPGELFF 98 3962 EBV-BLMF1 EBV 0.6 2531 NEG 181 3781 9 EBV BLMF1 GLCTLVAML effector memory T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*02:01 B2M MHCI -1212 chip0420_114292 6.26 11.34 Chip1 T1D_1 T1D _ 6746 6954 EBV-LMP1-1 EBV 0.5 237 NEG 170 6784 7 EBV LMP1 YLLEMLWRL transitional T cells between effector and memory populations PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*02:01 B2M MHCI -1213 chip0420_66996 -1.21 10.21 Chip1 T1D_1 T1D TGCAGTGCTAGGGACAGGGGGCACTCTGGAAACACCATATATTTT CSARDRGHSGNTIYF TRBV20-1*01 TRBJ1-3*01 23.0 784.0 _CSARDRGHSGNTIYF 1 6155 PGT-178 PGT 0.73 1480 PGT-178 164 5991 3 HomoSapiens PGT LLAGIGTVPI Naive T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*02:01 B2M MHCI -1214 chip0420_806103 -1.39 8.07 Chip1 T1D_2 T1D _ 6746 6874 ZNT8-153-161 ZNT8 0.96 41 ZNT8-153-161 180 6694 3 HomoSapiens ZNT8 VVTGVLVYL Naive T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*02:01 B2M MHCI -1215 chip0420_222479 5.06 10.68 Chip1 T1D_2 T1D TGCATCATCAGTTCCCCCGATCGGCTTT CIIStc??ccPIGF TRAV26-1*01 TRAJ27*01 11.0 128.0 TGCAGTGCTGTGACAGGGGGAGGTGGCACTGAAGCTTTCTTT CSAVTGGGGTEAFF TRBV20-1*01 TRBJ1-1*01 57.0 3165.0 CIIStc??ccPIGF_CSAVTGGGGTEAFF 1 9034 MART1-ALA MART1 0.48 269 NEG 185 8849 6 HomoSapiens MART1 ALAGIGILTV central memory T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*02:01 B2M MHCI -1216 chip0420_50229 11.93 11.95 Chip1 T1D_2 T1D TGTGCCGTTAAGGAGACAGGCAAACTAATCTTT CAVKETGKLIF TRAV8-1*01 TRAJ37*01 16.0 1367.0 TGTGCCAGCACCAGTGGATCGGGCTTTGAGCAGTACTTC CASTSGSGFEQYF TRBV7-9*01 TRBJ2-7*01 15.0 756.0 CAVKETGKLIF_CASTSGSGFEQYF 3 1935 EBV-BRLF1 EBV 0.88 1264 NEG 193 1742 11 EBV BRLF1 YVLDHLIVV effector T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*02:01 B2M MHCI -1217 chip0420_598802 12.47 12.26 Chip1 T1D_1 T1D _ 6746 2213 EBV-BRLF1 EBV 0.81 1264 NEG 173 2040 11 EBV BRLF1 YVLDHLIVV effector T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*02:01 B2M MHCI -1218 chip0420_361966 8.28 9.22 Chip1 T1D_1 T1D _ 6746 6023 EBV-BRLF1 EBV 0.9 1264 EBV-BRLF1 167 5856 8 EBV BRLF1 YVLDHLIVV effector memory T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*02:01 B2M MHCI -1219 chip0420_16135 11.92 6.94 Chip1 T1D_2 T1D TGTGCCAGCAGCTCGGGACTAGTCGCCCCCGGGGAGCTGTTTTTT CASSSGLVAPGELFF TRBV2*01 TRBJ2-2*01 11.0 696.0 _CASSSGLVAPGELFF 133 3843 EBV-BLMF1 EBV 1.0 2531 NEG 186 3657 10 EBV BLMF1 GLCTLVAML effector memory T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*02:01 B2M MHCI -1220 chip0420_739351 9.73 10.94 Chip1 T1D_1 T1D _ 6746 4495 EBV-BRLF1 EBV 0.69 1264 NEG 192 4303 9 EBV BRLF1 YVLDHLIVV effector memory T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*02:01 B2M MHCI -1221 chip0420_548423 10.02 11.17 Chip1 T1D_2 T1D TGTGCAGAGAGTACTTCGGGAGGAAAGCTTATCTTC CAESTSGGKLIF TRAV5*01 TRAJ23*01 26.0 1985.0 TGCAGCGTGGGGACAGGGGGAACTAATGAAAAACTGTTTTTT CSVGTGGTNEKLFF TRBV29-1*01 TRBJ1-4*01 50.0 2601.0 CAESTSGGKLIF_CSVGTGGTNEKLFF 107 3173 EBV-BLMF1 EBV 1.0 2531 NEG 195 2978 9 EBV BLMF1 GLCTLVAML effector memory T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*02:01 B2M MHCI -1222 chip0420_524878 5.58 12.32 Chip1 T1D_1 T1D _ 6746 5416 M1 FLU 0.79 1250 M1 193 5223 7 InfluenzaA M1 GILGFVFTL transitional T cells between effector and memory populations PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*02:01 B2M MHCI -1223 chip0420_174407 9.74 10.2 Chip1 T1D_1 T1D _ 6746 5235 EBV-BLMF1 EBV 0.6 2531 NEG 196 5039 9 EBV BLMF1 GLCTLVAML effector memory T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*02:01 B2M MHCI -1224 chip0420_579977 14.5 9.85 Chip1 T1D_1 T1D _ 6746 3506 EBV-BLMF1 EBV 0.77 2531 NEG 188 3318 12 EBV BLMF1 GLCTLVAML effector T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*02:01 B2M MHCI -1225 chip0420_510050 8.5 9.09 Chip1 T1D_1 T1D _ 6746 5763 EBV-BLMF1 EBV 1.0 2531 EBV-BLMF1 179 5584 8 EBV BLMF1 GLCTLVAML effector memory T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*02:01 B2M MHCI -1226 chip0420_724187 12.53 8.45 Chip1 T1D_2 T1D _ 6746 2059 EBV-BLMF1 EBV 0.7 2531 NEG 171 1888 10 EBV BLMF1 GLCTLVAML effector memory T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*02:01 B2M MHCI -1227 chip0420_576440 8.93 8.92 Chip1 T1D_1 T1D TGCGGCACAGAGGAACCTAACGACTACAAGCTCAGCTTT CGTEEPNDYKLSF TRAV30*01 TRAJ20*01 41.0 2162.0 CGTEEPNDYKLSF_ 22 3403 EBV-BLMF1 EBV 0.58 2531 NEG 160 3243 8 EBV BLMF1 GLCTLVAML effector memory T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*02:01 B2M MHCI -1228 chip0420_251553 10.31 10.58 Chip1 T1D_1 T1D TGTGCCAGCAGTCCGGACCAAACTAGCTCCTACAATGAGCAGTTCTTC CASSPDQTSSYNEQFF TRBV27*01 TRBJ2-1*01 12.0 384.0 _CASSPDQTSSYNEQFF 47 4880 EBV-BRLF1 EBV 0.94 1264 EBV-BRLF1 184 4696 9 EBV BRLF1 YVLDHLIVV effector memory T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*02:01 B2M MHCI -1229 chip0420_211585 12.34 13.4 Chip1 T1D_2 T1D TGTGCCAGCTCCATGGGATTGAGTGTAGGCACTGAAGCTTTCTTT CASSMGLSVGTEAFF TRBV19*01 TRBJ1-1*01 36.0 1482.0 _CASSMGLSVGTEAFF 1 2040 EBV-BLMF1 EBV 0.5 2531 NEG 171 1869 11 EBV BLMF1 GLCTLVAML effector T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*02:01 B2M MHCI -1230 chip0420_199173 0.3 5.92 Chip1 T1D_2 T1D TGTGCCAGCAGTTTGGCAGGGTCTGAAGCTTTCTTT CASSLAGSEAFF TRAV14/DV4*01,TRAV9-2*01 TRAJ40*01 2.0 6.0 TGTGCCAGCAGTTTGGCAGGGTCTGAAGCTTTCTTT CASSLAGSEAFF TRBV12-3*01,TRBV12-4*01 TRBJ1-1*01 72.0 4314.0 CASSLAGSEAFF_CASSLAGSEAFF 1 7264 PTPRN-805-813 PTPRN 0.54 11 PTPRN-805-813 140 7124 3 HomoSapiens PTPRN VIVMLTPLV Naive T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*02:01 B2M MHCI -1231 chip0420_762789 11.16 8.31 Chip1 T1D_1 T1D TGTGTGGTGAACGGGCCGGATAGCAGCTATAAATTGATCTTC CVVNGPDSSYKLIF TRAV12-1*01 TRAJ12*01 38.0 2058.0 CVVNGPDSSYKLIF_ 4 5680 EBV-BLMF1 EBV 0.73 2531 NEG 167 5513 10 EBV BLMF1 GLCTLVAML effector memory T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*02:01 B2M MHCI -1232 chip0420_318371 10.09 9.45 Chip1 T1D_2 T1D _ 6746 3122 EBV-BRLF1 EBV 1.0 1264 NEG 207 2915 8 EBV BRLF1 YVLDHLIVV effector memory T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*02:01 B2M MHCI -1233 chip0420_272742 13.9 9.77 Chip1 T1D_1 T1D TGTGCCAGCAGCCCGGGACAGCTATCGAACACCGGGGAGCTGTTTTTT CASSPGQLSNTGELFF TRBV9*01 TRBJ2-2*01 64.0 2479.0 _CASSPGQLSNTGELFF 3 2372 EBV-BLMF1 EBV 0.42 2531 NEG 168 2204 12 EBV BLMF1 GLCTLVAML effector T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*02:01 B2M MHCI -1234 chip0420_42782 6.31 11.64 Chip1 T1D_1 T1D TGTGCAATGAGAGAGGATAATGCAGGCAACATGCTCACCTTT CAMREDNAGNMLTF TRAV14/DV4*01 TRAJ39*01 98.0 4158.0 CAMREDNAGNMLTF_ 5 7736 M1 FLU 0.83 1250 M1 173 7563 7 InfluenzaA M1 GILGFVFTL transitional T cells between effector and memory populations PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*02:01 B2M MHCI -1235 chip0420_204603 12.61 8.93 Chip1 T1D_1 T1D TGTGCCAGCAGTTCCGGAGGGAACGTGGATACGCAGTATCTT CASSSGGNVDTQYL TRBV7-3*01 TRBJ2-3*01 20.0 1014.0 _CASSSGGNVDTQYL 1 3448 EBV-BLMF1 EBV 0.71 2531 NEG 185 3263 10 EBV BLMF1 GLCTLVAML effector memory T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*02:01 B2M MHCI -1236 chip0420_666761 13.76 9.8 Chip1 T1D_1 T1D TGTGCTTATAGGAGCCCGCCCTCATCTGAAAAGCTGGTCTTT CAYRSPPSSEKLVF TRAV38-2/DV8*01 TRAJ57*01 2.0 35.0 TGCAGCGTGTGCATACTAGCCCAGAATTACAATGAGCAGTTCTTC CSVCILAQNYNEQFF TRBV29-1*01 TRBJ2-1*01 16.0 1490.0 CAYRSPPSSEKLVF_CSVCILAQNYNEQFF 1 3134 EBV-BLMF1 EBV 0.47 2531 NEG 147 2987 12 EBV BLMF1 GLCTLVAML effector T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*02:01 B2M MHCI -1237 chip0420_409639 13.07 6.32 Chip1 T1D_1 T1D TGTGCCAGCAGCCCGGGGGCCGCCCGTGGCGAGCAGTACTTC CASSPGAARGEQYF TRBV5-6*01 TRBJ2-7*01 89.0 4101.0 _CASSPGAARGEQYF 1 4303 EBV-LMP1-1 EBV 0.85 237 NEG 199 4104 10 EBV LMP1 YLLEMLWRL effector memory T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*02:01 B2M MHCI -1238 chip0420_859511 8.07 10.95 Chip1 T1D_2 T1D TGTGCAGAACCTATTCCCGGAGTTAACAGAAACTTACCTTT CAEPIPgg?S*QKLTF TRAV5*01 TRAJ13*01 16.0 1859.0 TGTGCCAGCACCCCCGATATTAACACTGAAGCTTTCTTT CASTPDINTEAFF TRBV6-1*01 TRBJ1-1*01 80.0 3045.0 CAEPIPgg?S*QKLTF_CASTPDINTEAFF 1 5372 EBV-BLMF1 EBV 0.94 2531 EBV-BLMF1 197 5175 7 EBV BLMF1 GLCTLVAML transitional T cells between effector and memory populations PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*02:01 B2M MHCI -1239 chip0420_837619 15.82 11.48 Chip1 T1D_1 T1D TGCGGCACAGAGGAACCTAACGACTACAAGCTCAGCTTT CGTEEPNDYKLSF TRAV30*01 TRAJ20*01 2.0 101.0 TGTGCCAGCAGCACGGGACAGCTATCGAACACCGGGGAGCTGTTTTTT CASSTGQLSNTGELFF TRBV9*01 TRBJ2-2*01 2.0 85.0 CGTEEPNDYKLSF_CASSTGQLSNTGELFF 18 2259 EBV-BLMF1 EBV 0.88 2531 NEG 169 2090 12 EBV BLMF1 GLCTLVAML effector T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*02:01 B2M MHCI -1240 chip0420_557689 -2.63 7.86 Chip1 T1D_1 T1D TGTGCCAGCAGTGAGTTCAGGGGCGCAGATACGCAGTATTTT CASSEFRGADTQYF TRBV2*01 TRBJ2-3*01 30.0 1954.0 _CASSEFRGADTQYF 1 6469 PTPRN-180-188 PTPRN 0.91 18 PTPRN-180-188 156 6313 2 HomoSapiens PTPRN LLPPLLEHL Naive T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*02:01 B2M MHCI -1241 chip0420_110157 -2.93 8.73 Chip1 T1D_1 T1D CGTGCCGTGAACGGACGGGGAGACATGCGCTTT RAVNGRGDMRF TRAV12-2*01 TRAJ43*01 20.0 2066.0 TGTGCCACCAGTGATTTAGCGGGAGGGCTCAATGAGCAGTTCTTC CATSDLAGGLNEQFF TRBV24-1*01 TRBJ2-1*01 37.0 2357.0 RAVNGRGDMRF_CATSDLAGGLNEQFF 1 7391 PGT-178 PGT 0.85 1480 PGT-178 185 7206 2 HomoSapiens PGT LLAGIGTVPI Naive T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*02:01 B2M MHCI -1242 chip0420_165135 11.51 11.05 Chip1 T1D_2 T1D TGTGTGGTGAACGGCAGGGATAGCAGCTATAAATTGATCTTC CVVNGRDSSYKLIF TRAV12-1*01 TRAJ12*01 51.0 2130.0 TGTGCCAGCAGCTCGGGACTAGTCGCCCCCGGGGAGCTGTTTTTT CASSSGLVAPGELFF TRBV2*01 TRBJ2-2*01 68.0 3562.0 CVVNGRDSSYKLIF_CASSSGLVAPGELFF 98 2686 EBV-BLMF1 EBV 0.75 2531 NEG 189 2497 9 EBV BLMF1 GLCTLVAML effector memory T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*02:01 B2M MHCI -1243 chip0420_460705 12.44 6.92 Chip1 T1D_1 T1D TGTGCAGAGGACTCCAATGCCAGACTCATGTTT CAEDSNARLMF TRAV5*01 TRAJ31*01 1.0 10.0 TGCAGCGTGGGGACAGGGGGAACTAATGAAAAACTGTTTTTT CSVGTGGTNEKLFF TRBV29-1*01 TRBJ1-4*01 4.0 92.0 CAEDSNARLMF_CSVGTGGTNEKLFF 1 3431 EBV-BLMF1 EBV 0.95 2531 EBV-BLMF1 190 3241 10 EBV BLMF1 GLCTLVAML effector memory T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*02:01 B2M MHCI -1244 chip0420_709846 9.75 10.92 Chip1 T1D_2 T1D TGTGCAATGAGAGTGCAGATGGATAGCAACTATCAGTTAATCTGG CAMRVQMDSNYQLIW TRAV14/DV4*01 TRAJ33*01 66.0 2753.0 TGTGCCAGCAGCTTAGAGTCGGGACTACTTCACAATGAGCAGTTCTTC CASSLESGLLHNEQFF TRBV11-3*01 TRBJ2-1*01 3.0 94.0 CAMRVQMDSNYQLIW_CASSLESGLLHNEQFF 1 4425 EBV-BLMF1 EBV 0.83 2531 NEG 184 4241 9 EBV BLMF1 GLCTLVAML effector memory T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*02:01 B2M MHCI -1245 chip0420_280387 12.37 13.16 Chip1 T1D_1 T1D TGTGCCAGTAGTCCCCACTTGGGTGCGGCGGCCGAGCAGTACTTC CASSPHLGAAAEQYF TRBV19*01 TRBJ2-7*01 21.0 963.0 _CASSPHLGAAAEQYF 10 2107 EBV-BRLF1 EBV 1.0 1264 NEG 159 1948 11 EBV BRLF1 YVLDHLIVV effector T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*02:01 B2M MHCI -1246 chip0420_152824 13.26 10.59 Chip1 T1D_1 T1D TGTGCCAGCAGTCCGGACCAAACTAGCTCCTACAATGAGCAGTTCTTC CASSPDQTSSYNEQFF TRBV27*01 TRBJ2-1*01 60.0 3289.0 _CASSPDQTSSYNEQFF 47 3537 EBV-BRLF1 EBV 0.85 1264 EBV-BRLF1 194 3343 9 EBV BRLF1 YVLDHLIVV effector memory T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*02:01 B2M MHCI -1247 chip0420_105965 8.66 11.41 Chip1 T1D_2 T1D _ 6746 4124 EBV-BLMF1 EBV 0.89 2531 NEG 158 3966 9 EBV BLMF1 GLCTLVAML effector memory T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*02:01 B2M MHCI -1248 chip0420_677852 10.4 11.33 Chip1 T1D_1 T1D TGCAGCGTCGGCTCCAGGGGAACTAATGAAAAACTGTTTTTT CSVGSRGTNEKLFF TRBV29-1*01 TRBJ1-4*01 55.0 3266.0 _CSVGSRGTNEKLFF 283 2616 EBV-BLMF1 EBV 0.45 2531 NEG 160 2456 9 EBV BLMF1 GLCTLVAML effector memory T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*02:01 B2M MHCI -1249 chip0420_856007 14.96 9.83 Chip1 T1D_2 T1D TGTGCCAGCAACTTAGCGGGGAACAATGAGCAGTTCTTC CASNLAGNNEQFF TRBV9*01 TRBJ2-1*01 11.0 502.0 _CASNLAGNNEQFF 15 4436 EBV-BLMF1 EBV 0.67 2531 NEG 173 4263 12 EBV BLMF1 GLCTLVAML effector T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*02:01 B2M MHCI -1250 chip0420_440503 15.99 9.46 Chip1 T1D_2 T1D TGTGCAGAGAGTACTTCGGGAGGTAGGCTTATCTTC CAESTSGGRLIF TRAV5*01 TRAJ23*01 5.0 401.0 TGCAGCGTGGGGACAGGGGGAACTAATGAAAAACTGTTTTTT CSVGTGGTNEKLFF TRBV29-1*01 TRBJ1-4*01 24.0 1272.0 CAESTSGGRLIF_CSVGTGGTNEKLFF 5 2592 EBV-BLMF1 EBV 0.57 2531 NEG 196 2396 12 EBV BLMF1 GLCTLVAML effector T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*02:01 B2M MHCI -1251 chip0420_206304 10.29 9.6 Chip1 T1D_2 T1D TGCAGCGTTGGCCAGGCCCTCTACAATGAGCAGTTCTTC CSVGQALYNEQFF TRBV29-1*01 TRBJ2-1*01 18.0 1438.0 _CSVGQALYNEQFF 2 2895 EBV-BRLF1 EBV 0.98 1264 EBV-BRLF1 163 2732 9 EBV BRLF1 YVLDHLIVV effector memory T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*02:01 B2M MHCI -1252 chip0420_238075 14.62 8.59 Chip1 T1D_2 T1D TGTGCCTGGCGTGGGGTTAGCGGCTCCTACAATGAGCAGTTCTTC CAWRGVSGSYNEQFF TRBV30*01 TRBJ2-1*01 46.0 3293.0 _CAWRGVSGSYNEQFF 1 2156 EBV-BRLF1 EBV 0.88 1264 EBV-BRLF1 196 1960 12 EBV BRLF1 YVLDHLIVV effector T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*02:01 B2M MHCI -1253 chip0420_533520 15.6 8.94 Chip1 T1D_1 T1D TGTGCCAGCAGCACGGGACAGCTATCGAACACCGGGGAGCTGTTTTTT CASSTGQLSNTGELFF TRBV9*01 TRBJ2-2*01 43.0 2290.0 _CASSTGQLSNTGELFF 82 3013 EBV-BLMF1 EBV 0.69 2531 NEG 189 2824 12 EBV BLMF1 GLCTLVAML effector T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*02:01 B2M MHCI -1254 chip0420_633188 7.67 14.2 Chip1 T1D_1 T1D TGTGCCAGTAGCGGCAGGAGCACAGATACGCAGTATTTT CASSGRSTDTQYF TRBV19*01 TRBJ2-3*01 22.0 914.0 _CASSGRSTDTQYF 5 2739 M1 FLU 0.59 1250 M1 179 2560 7 InfluenzaA M1 GILGFVFTL transitional T cells between effector and memory populations PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*02:01 B2M MHCI -1255 chip0420_153547 14.4 9.92 Chip1 T1D_1 T1D _ 6746 3616 EBV-BRLF1 EBV 0.88 1264 EBV-BRLF1 157 3459 12 EBV BRLF1 YVLDHLIVV effector T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*02:01 B2M MHCI -1256 chip0420_281749 9.74 9.8 Chip1 T1D_1 T1D TGTGCTCTCTATAACACCGACAAGCTCATCTTT CALYNTDKLIF TRAV9-2*01 TRAJ34*01 15.0 1252.0 TGTGCCAGCAGCCCAGTTAGCGGGTCAACCTACGAGCAGTACTTC CASSPVSGSTYEQYF TRBV3-1*01 TRBJ2-7*01 29.0 2008.0 CALYNTDKLIF_CASSPVSGSTYEQYF 15 3627 EBV-BLMF1 EBV 0.64 2531 EBV-BLMF1 161 3466 9 EBV BLMF1 GLCTLVAML effector memory T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*02:01 B2M MHCI -1257 chip0420_6345 13.38 12.49 Chip1 T1D_1 T1D TGTGCCAGCAGTGACGGTCGGGTCCACCCGGGGACCCAGTACTTC CASSDGRVHPGTQYF TRBV2*01 TRBJ2-5*01 117.0 7334.0 _CASSDGRVHPGTQYF 24 1924 EBV-BLMF1 EBV 0.75 2531 NEG 182 1742 11 EBV BLMF1 GLCTLVAML effector T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*02:01 B2M MHCI -1258 chip0420_843875 5.15 11.64 Chip1 T1D_2 T1D TGTGCTTTCATGGATTTAGGCAAACTAATCTTT CAFMDLGKLIF TRAV38-1*01 TRAJ37*01 21.0 2065.0 CAFMDLGKLIF_ 1 5974 GP160-311-320 HIV 0.81 109 GP160-311-320 136 5838 6 HIV-1 GP160 RGPGRAFVTI central memory T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*02:01 B2M MHCI -1259 chip0420_300348 8.78 8.64 Chip1 T1D_1 T1D _ 6746 5486 EBV-BRLF1 EBV 0.9 1264 EBV-BRLF1 166 5320 8 EBV BRLF1 YVLDHLIVV effector memory T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*02:01 B2M MHCI -1260 chip0420_96456 11.37 8.83 Chip1 T1D_2 T1D TGCCCCAGCAGCGCGGGGCCCGGGGGTACGCAGTATTTT CPSSAGPGGTQYF TRBV10-2*01 TRBJ2-3*01 2.0 134.0 _CPSSAGPGGTQYF 1 2815 EBV-BLMF1 EBV 0.78 2531 NEG 170 2645 10 EBV BLMF1 GLCTLVAML effector memory T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*02:01 B2M MHCI -1261 chip0420_72169 15.46 9.22 Chip1 T1D_1 T1D TGTGCCAGCAGCACGGGACAGCTATCGAACACCGGGGAGCTGTTTTTT CASSTGQLSNTGELFF TRBV9*01 TRBJ2-2*01 38.0 1666.0 _CASSTGQLSNTGELFF 82 2949 EBV-BLMF1 EBV 0.69 2531 NEG 166 2783 12 EBV BLMF1 GLCTLVAML effector T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*02:01 B2M MHCI -1262 chip0420_434613 16.02 11.56 Chip1 T1D_1 T1D TGTGCCAGCAGCCCAGTTAGCGGGTCAACCTACGAGCAGTACTTC CASSPVSGSTYEQYF TRBV3-1*01 TRBJ2-7*01 8.0 500.0 _CASSPVSGSTYEQYF 80 2083 EBV-BLMF1 EBV 0.73 2531 NEG 182 1901 12 EBV BLMF1 GLCTLVAML effector T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*02:01 B2M MHCI -1263 chip0420_32343 -1.35 8.86 Chip1 T1D_1 T1D TGCAGTGCTACTAGCGGATCTTTGAGCTCCTACAATGAGCAGTTCTTC CSATSGSLSSYNEQFF TRBV20-1*01 TRBJ2-1*01 119.0 7006.0 _CSATSGSLSSYNEQFF 1 5816 HCVNS4B-1807-1816 HCV 0.56 74 NEG 168 5648 3 HCV NS4B LLFNILGGWV Naive T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*02:01 B2M MHCI -1264 chip0420_738356 7.03 13.27 Chip1 T1D_1 T1D TGTGCCAGTAGTGTCAGGGCAGGAGAGACCCAGTACTTC CASSVRAGETQYF TRBV19*01 TRBJ2-5*01 25.0 2165.0 _CASSVRAGETQYF 23 3809 M1 FLU 0.76 1250 M1 171 3638 7 InfluenzaA M1 GILGFVFTL transitional T cells between effector and memory populations PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*02:01 B2M MHCI -1265 chip0420_526250 11.16 8.56 Chip1 T1D_2 T1D TGTGCAGCATACGCAGGCAACATGCTCACCTTT CAAYAGNMLTF TRAV29/DV5*01 TRAJ39*01 45.0 4222.0 TGCGCCAGCAGGATGGGGGCCGGGGATACGCAGTATTTT CASRMGAGDTQYF TRBV10-2*01 TRBJ2-3*01 9.0 537.0 CAAYAGNMLTF_CASRMGAGDTQYF 21 3124 EBV-BLMF1 EBV 1.0 2531 NEG 201 2923 10 EBV BLMF1 GLCTLVAML effector memory T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*02:01 B2M MHCI -1266 chip0420_374269 11.93 8.13 Chip1 T1D_2 T1D TGCAGCGTGGGGACAGGGGGAACTAATGAAAAACTGTTTTTT CSVGTGGTNEKLFF TRBV29-1*01 TRBJ1-4*01 79.0 3553.0 _CSVGTGGTNEKLFF 638 2918 EBV-BLMF1 EBV 0.5 2531 NEG 193 2725 10 EBV BLMF1 GLCTLVAML effector memory T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*02:01 B2M MHCI -1267 chip0420_861040 11.68 13.4 Chip1 T1D_1 T1D TGTGCCCTACATCGGGAAGGCAAATCAACCTTT CALHREGKSTF TRAV8-1*01 TRAJ27*01 63.0 4670.0 CALHREGKSTF_ 2 1745 EBV-BRLF1 EBV 0.79 1264 NEG 157 1588 11 EBV BRLF1 YVLDHLIVV effector T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*02:01 B2M MHCI -1268 chip0420_293655 10.35 7.98 Chip1 T1D_2 T1D TGTGCCAGCAGTTTAGCGCAGGTAGCGGGAGGGAATGAGCAGTTCTTC CASSLAQVAGGNEQFF TRBV12-3*01,TRBV12-4*01 TRBJ2-1*01 45.0 2441.0 _CASSLAQVAGGNEQFF 2 4421 EBV-BLMF1 EBV 0.87 2531 NEG 209 4212 10 EBV BLMF1 GLCTLVAML effector memory T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*02:01 B2M MHCI -1269 chip0420_155065 9.06 8.3 Chip1 tet_neg TGCAGCGTTGGGGGCAGCTTCTATGGCTACACCTTC CSVGGSFYGYTF TRBV29-1*01 TRBJ1-2*01 73.0 7287.0 _CSVGGSFYGYTF 42 5021 EBV-BLMF1 EBV 1.0 2531 NEG 186 4835 8 EBV BLMF1 GLCTLVAML effector memory T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*02:01 B2M MHCI -1270 chip0420_544189 10.47 10.87 Chip1 T1D_1 T1D _ 6746 3431 EBV-BLMF1 EBV 0.88 2531 EBV-BLMF1 169 3262 9 EBV BLMF1 GLCTLVAML effector memory T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*02:01 B2M MHCI -1271 chip0420_93141 13.17 8.22 Chip1 T1D_1 T1D TGCAGCGTCACAACCGACAGGAATAGCAATCAGCCCCAGCATTTT CSVTTDRNSNQPQHF TRBV29-1*01 TRBJ1-5*01 189.0 8671.0 _CSVTTDRNSNQPQHF 10 2419 EBV-BLMF1 EBV 0.64 2531 NEG 174 2245 10 EBV BLMF1 GLCTLVAML effector memory T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*02:01 B2M MHCI -1272 chip0420_157210 11.0 10.76 Chip1 T1D_1 T1D TGTGTGGTGAACGGACGGGATAGCAGCTATAAATTGATCTTC CVVNGRDSSYKLIF TRAV12-1*01 TRAJ12*01 13.0 752.0 TGTGCCAGCAGTGACGGTCGGGTCCACCCGGGGACCCAGTACTTC CASSDGRVHPGTQYF TRBV2*01 TRBJ2-5*01 26.0 1243.0 CVVNGRDSSYKLIF_CASSDGRVHPGTQYF 14 3238 EBV-BLMF1 EBV 0.75 2531 NEG 185 3053 9 EBV BLMF1 GLCTLVAML effector memory T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*02:01 B2M MHCI -1273 chip0420_118412 14.07 8.9 Chip1 T1D_2 T1D TGTGCCGTGAAGGACACCGACAAGCTCATCTTT CAVKDTDKLIF TRAV8-1*01 TRAJ34*01 19.0 2087.0 TGCAGCGTGGGGACAGGGGGAACTAATGAAAAACTGTTTTTT CSVGTGGTNEKLFF TRBV29-1*01 TRBJ1-4*01 35.0 1507.0 CAVKDTDKLIF_CSVGTGGTNEKLFF 1 2209 EBV-BRLF1 EBV 0.55 1264 NEG 181 2028 12 EBV BRLF1 YVLDHLIVV effector T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*02:01 B2M MHCI -1274 chip0420_33025 -1.35 9.89 Chip1 T1D_2 T1D TGTGCCGTCCTTTCTGGGGCTGGGAGTTACCAACTCACTTTC CAVLSGAGSYQLTF TRAV12-2*01 TRAJ28*01 37.0 2135.0 TGTGCCAGCAGCCCTAACTATGGCTACACCTTC CASSPNYGYTF TRBV7-9*01 TRBJ1-2*01 54.0 3769.0 CAVLSGAGSYQLTF_CASSPNYGYTF 1 5316 ZNT8-16-24 ZNT8 0.94 39 ZNT8-16-24 177 5139 3 HomoSapiens ZNT8 KMYAFTLES Naive T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*02:01 B2M MHCI -1275 chip0420_246891 5.87 13.74 Chip1 T1D_1 T1D TGTGCAGGGAATTATGGAGGAAGCCAAGGAAATCTCATCTTT CAGNYGGSQGNLIF TRAV25*01 TRAJ42*01 9.0 440.0 TGTGCCAGTAGTTCTCGCAGCACAGATACGCAGTATTTT CASSSRSTDTQYF TRBV19*01 TRBJ2-3*01 2.0 53.0 CAGNYGGSQGNLIF_CASSSRSTDTQYF 2 4874 M1 FLU 0.81 1250 M1 188 4686 7 InfluenzaA M1 GILGFVFTL transitional T cells between effector and memory populations PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*02:01 B2M MHCI -1276 chip0420_199255 -2.87 11.73 Chip1 T1D_2 T1D TGTGCTGTGGAGGGCGGCGTGTCGGGAGGAGGAAACAAACTCACCTTT CAVEGGVSGGGNKLTF TRAV22*01 TRAJ10*01 1.0 19.0 CAVEGGVSGGGNKLTF_ 1 3414 PREINS-2-10 INS 0.98 37 PREINS-2-10 160 3254 1 HomoSapiens PREINS ALWMRLLPL Naive T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*02:01 B2M MHCI -1277 chip0420_597236 10.9 10.73 Chip1 T1D_2 T1D TGTGCCAGCAGCTCGGGACTAGTCGCCCCCGGGGAGCTGTTTTTT CASSSGLVAPGELFF TRBV2*01 TRBJ2-2*01 47.0 2620.0 _CASSSGLVAPGELFF 133 4390 EBV-BLMF1 EBV 0.8 2531 NEG 170 4220 9 EBV BLMF1 GLCTLVAML effector memory T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*02:01 B2M MHCI -1278 chip0420_849850 9.11 8.18 Chip1 T1D_1 T1D TGTGCCAGCAGCCAAAGCCCGGGTGGTACGCAGTATTTT CASSQSPGGTQYF TRBV14*01 TRBJ2-3*01 11.0 360.0 _CASSQSPGGTQYF 94 4264 EBV-BLMF1 EBV 0.7 2531 NEG 176 4088 8 EBV BLMF1 GLCTLVAML effector memory T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*02:01 B2M MHCI -1279 chip0420_486717 -2.85 9.82 Chip1 T1D_1 T1D _ 6746 4680 GP160-311-320 HIV 0.61 109 NEG 149 4531 2 HIV-1 GP160 RGPGRAFVTI Naive T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*02:01 B2M MHCI -1280 chip0420_322086 16.21 10.3 Chip1 T1D_2 T1D TGCAGCGTGGGGACAGGGGGAACTAATGAAAAACTGTTTTTT CSVGTGGTNEKLFF TRBV29-1*01 TRBJ1-4*01 38.0 1472.0 _CSVGTGGTNEKLFF 638 2386 EBV-BLMF1 EBV 0.83 2531 NEG 173 2213 12 EBV BLMF1 GLCTLVAML effector T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*02:01 B2M MHCI -1281 chip0420_707821 12.36 7.26 Chip1 T1D_2 T1D TGCAGCGTGGGGACAGGGGGAACTAATGAAAAACTGTTTTTT CSVGTGGTNEKLFF TRBV29-1*01 TRBJ1-4*01 85.0 4352.0 _CSVGTGGTNEKLFF 638 3089 EBV-BLMF1 EBV 0.4 2531 NEG 174 2915 10 EBV BLMF1 GLCTLVAML effector memory T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*02:01 B2M MHCI -1282 chip0420_807725 11.23 9.7 Chip1 T1D_2 T1D TGTGTGGTGAACGGCAGGGATAGCAGCTATAAATTGATCTTC CVVNGRDSSYKLIF TRAV12-1*01 TRAJ12*01 72.0 4436.0 TGTGCCAGCAGCTCGGGACTAGTCGCCCCCGGGGAGCTGTTTTTT CASSSGLVAPGELFF TRBV2*01 TRBJ2-2*01 3.0 73.0 CVVNGRDSSYKLIF_CASSSGLVAPGELFF 98 3814 EBV-BLMF1 EBV 0.5 2531 NEG 168 3646 9 EBV BLMF1 GLCTLVAML effector memory T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*02:01 B2M MHCI -1283 chip0420_308135 14.93 10.69 Chip1 T1D_2 T1D TGCAGCGTGGGGACAGGGGGAACTAATGAAAAACTGTTTTTT CSVGTGGTNEKLFF TRBV29-1*01 TRBJ1-4*01 99.0 6589.0 _CSVGTGGTNEKLFF 638 2960 EBV-BLMF1 EBV 0.86 2531 NEG 197 2763 12 EBV BLMF1 GLCTLVAML effector T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*02:01 B2M MHCI -1284 chip0420_238120 13.5 8.43 Chip1 T1D_2 T1D TGTGCAGAGGATAACAATGCCAGACTCATGTTT CAEDNNARLMF TRAV5*01 TRAJ31*01 2.0 94.0 TGCAGCGTTGACCAAAGGACAGGGCAAAAGAAGAACTATGGCTACACCTTC CSVDQRTGQKKNYGYTF TRBV29-1*01 TRBJ1-2*01 95.0 4438.0 CAEDNNARLMF_CSVDQRTGQKKNYGYTF 3 1693 EBV-BLMF1 EBV 0.88 2531 NEG 173 1520 10 EBV BLMF1 GLCTLVAML effector memory T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*02:01 B2M MHCI -1285 chip0420_679539 12.91 6.76 Chip1 T1D_2 T1D TGCAGCGTGGGGACAGGGGGAACTAATGAAAAACTGTTTTTT CSVGTGGTNEKLFF TRBV29-1*01 TRBJ1-4*01 183.0 8833.0 _CSVGTGGTNEKLFF 638 3422 EBV-BLMF1 EBV 0.83 2531 NEG 190 3232 10 EBV BLMF1 GLCTLVAML effector memory T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*02:01 B2M MHCI -1286 chip0420_814946 7.35 13.26 Chip1 T1D_1 T1D _ 6746 3591 M1 FLU 0.87 1250 NEG 172 3419 7 InfluenzaA M1 GILGFVFTL transitional T cells between effector and memory populations PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*02:01 B2M MHCI -1287 chip0420_765724 11.37 7.49 Chip1 T1D_2 T1D TGCGCCAGCAGGATGGGGGCCGGGGATACGCAGTATTTT CASRMGAGDTQYF TRBV10-2*01 TRBJ2-3*01 9.0 385.0 _CASRMGAGDTQYF 90 2956 EBV-BLMF1 EBV 1.0 2531 NEG 181 2775 10 EBV BLMF1 GLCTLVAML effector memory T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*02:01 B2M MHCI -1288 chip0420_149447 8.8 13.76 Chip1 T1D_1 T1D TGTGCCAGTAGTGACAGGGCGGGGGAGACCCAGTACTTC CASSDRAGETQYF TRBV19*01 TRBJ2-5*01 11.0 827.0 _CASSDRAGETQYF 1 1762 M1 FLU 0.92 1250 NEG 171 1591 11 InfluenzaA M1 GILGFVFTL effector T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*02:01 B2M MHCI -1289 chip0420_291315 -0.79 9.7 Chip1 T1D_1 T1D _ 6746 4440 CVB3-P3A CVB 0.83 77 CVB3-P3A 162 4278 4 CoxsackievirusB P3A GIIYIIYKL Naive T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*02:01 B2M MHCI -1290 chip0420_236703 -0.83 7.1 Chip1 T1D_1 T1D _ 6746 5545 PGT-178 PGT 0.63 1480 PGT-178 171 5374 3 HomoSapiens PGT LLAGIGTVPI Naive T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*02:01 B2M MHCI -1291 chip0420_243415 8.79 9.75 Chip1 T1D_2 T1D TGCGCCAGCAGGATGGGGGCCGGGGATACGCAGTATTTT CASRMGAGDTQYF TRBV10-2*01 TRBJ2-3*01 24.0 1312.0 _CASRMGAGDTQYF 90 4749 EBV-BLMF1 EBV 0.6 2531 NEG 188 4561 8 EBV BLMF1 GLCTLVAML effector memory T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*02:01 B2M MHCI -1292 chip0420_147344 11.5 7.58 Chip1 T1D_2 T1D TGTGCCAGCAGTGCCCTATTGGGGGGCGCCTATGGCTACACCTTC CASSALLGGAYGYTF TRBV27*01 TRBJ1-2*01 21.0 956.0 _CASSALLGGAYGYTF 6 3709 EBV-BRLF1 EBV 0.92 1264 NEG 212 3497 10 EBV BRLF1 YVLDHLIVV effector memory T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*02:01 B2M MHCI -1293 chip0420_755846 6.3 11.64 Chip1 T1D_1 T1D TGTGCCAGTAGTAAGAGAAGCACAGATACGCAGTATTTT CASSKRSTDTQYF TRBV19*01 TRBJ2-3*01 21.0 795.0 _CASSKRSTDTQYF 2 6252 M1 FLU 0.77 1250 M1 173 6079 7 InfluenzaA M1 GILGFVFTL transitional T cells between effector and memory populations PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*02:01 B2M MHCI -1294 chip0420_599221 11.34 7.2 Chip1 T1D_2 T1D TGTGCCGTGAATGCAGATGGCCAGAAGCTGCTCTTT CAVNADGQKLLF TRAV8-1*01 TRAJ16*01 1.0 14.0 TGTGCCTGGAGACCACTATTAGGAGGGGCCTCTGAAGCTTTCTTT CAWRPLLGGASEAFF TRBV30*01 TRBJ1-1*01 23.0 766.0 CAVNADGQKLLF_CAWRPLLGGASEAFF 1 2709 EBV-BRLF1 EBV 0.93 1264 NEG 192 2517 10 EBV BRLF1 YVLDHLIVV effector memory T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*02:01 B2M MHCI -1295 chip0420_258311 15.86 11.71 Chip1 T1D_1 T1D _ 6746 1747 EBV-BLMF1 EBV 0.82 2531 NEG 172 1575 12 EBV BLMF1 GLCTLVAML effector T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*02:01 B2M MHCI -1296 chip0420_113457 12.89 6.7 Chip1 T1D_2 T1D TGTGCAGCATACGCAGGCAACATGCTCACCTTT CAAYAGNMLTF TRAV29/DV5*01 TRAJ39*01 20.0 2211.0 TGCGCCAGCAGGATGGGGGCCGGGGATACGCAGTATTTT CASRMGAGDTQYF TRBV10-2*01 TRBJ2-3*01 23.0 1615.0 CAAYAGNMLTF_CASRMGAGDTQYF 21 3088 EBV-BLMF1 EBV 0.67 2531 NEG 203 2885 10 EBV BLMF1 GLCTLVAML effector memory T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*02:01 B2M MHCI -1297 chip0420_189740 12.06 9.28 Chip1 T1D_1 T1D TGTGCTGTGAGTGATTTGGGAATGACATGCGCTTT CAVSDtt?GNDMRF TRAV8-4*01,TRAV8-6*01 TRAJ43*01 2.0 169.0 TGTGCAGGGCTTCTGGGGGTTACCAGAAAGTTACCTTT CAGLLGg?tYQKVTF TRAV13-2*01 TRAJ13*01 2.0 193.0 0.5 TGCAGCGTCGGCTCCAGGGGAACTAATGAAAAACTGTTTTTT CSVGSRGTNEKLFF TRBV29-1*01 TRBJ1-4*01 65.0 3549.0 CAVSDtt?GNDMRF_CSVGSRGTNEKLFF 6 4305 EBV-BLMF1 EBV 0.56 2531 NEG 183 4122 10 EBV BLMF1 GLCTLVAML effector memory T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*02:01 B2M MHCI -1298 chip0420_78332 10.26 7.72 Chip1 T1D_2 T1D _ 6746 2286 EBV-BRLF1 EBV 0.88 1264 EBV-BRLF1 174 2112 10 EBV BRLF1 YVLDHLIVV effector memory T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*02:01 B2M MHCI -1299 chip0420_137920 10.47 9.74 Chip1 T1D_1 T1D TGTGCCAGCAGTTCCGGCGGGCACGTGGATACGCAGTATTTT CASSSGGHVDTQYF TRBV7-3*01 TRBJ2-3*01 7.0 294.0 _CASSSGGHVDTQYF 1 4609 EBV-BLMF1 EBV 0.75 2531 NEG 176 4433 9 EBV BLMF1 GLCTLVAML effector memory T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*02:01 B2M MHCI -1300 chip0420_684133 9.62 9.36 Chip1 T1D_1 T1D TGTGCCAGCAGTCCGGACCAAACTAGCTCCTACAATGAGCAGTTCTTC CASSPDQTSSYNEQFF TRBV27*01 TRBJ2-1*01 29.0 1639.0 _CASSPDQTSSYNEQFF 47 5798 EBV-BRLF1 EBV 0.9 1264 EBV-BRLF1 190 5608 8 EBV BRLF1 YVLDHLIVV effector memory T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*02:01 B2M MHCI -1301 chip0420_82750 11.94 10.13 Chip1 T1D_2 T1D _ 6746 3166 EBV-BRLF1 EBV 0.67 1264 EBV-BRLF1 175 2991 9 EBV BRLF1 YVLDHLIVV effector memory T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*02:01 B2M MHCI -1302 chip0420_51472 11.02 10.76 Chip1 T1D_1 T1D TGTGCTCTCTATAACACCGACAAGCTCATCTTT CALYNTDKLIF TRAV9-2*01 TRAJ34*01 10.0 745.0 TGTGCCAGCAGCCCAGTTAGCGGGTCAACCTACGAGCAGTACTTC CASSPVSGSTYEQYF TRBV3-1*01 TRBJ2-7*01 43.0 2907.0 CALYNTDKLIF_CASSPVSGSTYEQYF 15 3573 EBV-BLMF1 EBV 0.89 2531 EBV-BLMF1 170 3403 9 EBV BLMF1 GLCTLVAML effector memory T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*02:01 B2M MHCI -1303 chip0420_776419 7.59 11.69 Chip1 T1D_1 T1D _ 6746 4348 EBV-LMP2-FLY EBV 0.94 355 EBV-LMP2-FLY 151 4197 7 EBV LMP2 FLYALALLL transitional T cells between effector and memory populations PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*02:01 B2M MHCI -1304 chip0420_465748 10.19 9.52 Chip1 T1D_1 T1D TGCAGCGTCGGCTCCAGGGGAACTAATGAAAAACTGTTTTTT CSVGSRGTNEKLFF TRBV29-1*01 TRBJ1-4*01 219.0 8952.0 _CSVGSRGTNEKLFF 283 6157 EBV-BLMF1 EBV 1.0 2531 NEG 172 5985 9 EBV BLMF1 GLCTLVAML effector memory T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*02:01 B2M MHCI -1305 chip0420_286243 9.5 10.22 Chip1 T1D_2 T1D TGCAGCGTGGGGACAGGGGGAACTAATGAAAAACTGTTTTTT CSVGTGGTNEKLFF TRBV29-1*01 TRBJ1-4*01 163.0 6980.0 _CSVGTGGTNEKLFF 638 2845 EBV-BLMF1 EBV 0.83 2531 NEG 163 2682 8 EBV BLMF1 GLCTLVAML effector memory T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*02:01 B2M MHCI -1306 chip0420_298360 9.34 10.4 Chip1 T1D_2 T1D TGTGCCTGGAGTGTACAGCTAGCGGGAGTAGACGAGCAGTACTTC CAWSVQLAGVDEQYF TRBV30*01 TRBJ2-7*01 9.0 313.0 _CAWSVQLAGVDEQYF 11 4701 EBV-BRLF1 EBV 0.95 1264 EBV-BRLF1 164 4537 9 EBV BRLF1 YVLDHLIVV effector memory T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*02:01 B2M MHCI -1307 chip0420_272862 10.89 8.85 Chip1 T1D_1 T1D TGTGCCAGCAGCCAAAGCCCGGGTGGTACGCAGTATTTT CASSQSPGGTQYF TRBV14*01 TRBJ2-3*01 9.0 329.0 _CASSQSPGGTQYF 94 3562 EBV-BLMF1 EBV 0.75 2531 NEG 176 3386 10 EBV BLMF1 GLCTLVAML effector memory T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*02:01 B2M MHCI -1308 chip0420_73136 6.67 11.88 Chip1 T1D_1 T1D TGTGCTGGAGCGGGAGGGGGGAGCCAAGGAAATCTCATCTTT CAGAGGGSQGNLIF TRAV27*01 TRAJ42*01 59.0 1951.0 TGTGCCAGTAGTCCCCGAAGCACAGATACGCAGTATTTT CASSPRSTDTQYF TRBV19*01 TRBJ2-3*01 19.0 1266.0 CAGAGGGSQGNLIF_CASSPRSTDTQYF 1 5988 M1 FLU 0.96 1250 M1 167 5821 7 InfluenzaA M1 GILGFVFTL transitional T cells between effector and memory populations PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*02:01 B2M MHCI -1309 chip0420_613069 5.61 12.02 Chip1 T1D_2 T1D TGTGCTGTCAGATAGGGGAGAAACCCGTGGCTATTGGTTGACCTTT CAVR*GRaa??ccRGYWLTF TRAV41*01 TRAJ10*01 14.0 945.0 CAVR*GRaa??ccRGYWLTF_ 1 5253 INS-78-87 INS 1.0 1 NEG 158 5095 7 HomoSapiens INS GIVEQCCTSI transitional T cells between effector and memory populations PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*02:01 B2M MHCI -1310 chip0420_273211 15.29 12.74 Chip1 T1D_2 T1D TGCAGCGTGGGGACAGGGGGAACTAATGAAAAACTGTTTTTT CSVGTGGTNEKLFF TRBV29-1*01 TRBJ1-4*01 54.0 2965.0 _CSVGTGGTNEKLFF 638 1619 EBV-BLMF1 EBV 0.5 2531 NEG 194 1425 12 EBV BLMF1 GLCTLVAML effector T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*02:01 B2M MHCI -1311 chip0420_367757 5.51 11.26 Chip1 T1D_2 T1D TGTGCCTGGACAATCGACCGAGGCGAGCAGTACTTC CAWTIDRGEQYF TRBV30*01 TRBJ2-7*01 41.0 3169.0 _CAWTIDRGEQYF 1 5707 CVB3-P3A CVB 0.77 77 NEG 152 5555 6 CoxsackievirusB P3A GIIYIIYKL central memory T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*02:01 B2M MHCI -1312 chip0420_557609 11.4 11.03 Chip1 T1D_2 T1D TGTGCAGAGAGTACTTCGGGAGGAAAGCTTATCTTC CAESTSGGKLIF TRAV5*01 TRAJ23*01 53.0 4250.0 CAESTSGGKLIF_ 9 3277 EBV-BLMF1 EBV 0.62 2531 NEG 186 3091 9 EBV BLMF1 GLCTLVAML effector memory T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*02:01 B2M MHCI -1313 chip0420_587233 7.95 8.97 Chip1 T1D_1 T1D TGTGTTGTGGGTGTTTATGGCGGGGGCCACGGACATCTCATCTTT CVVGVYGGGHGHLIF TRAV8-2*01 TRAJ42*01 49.0 1931.0 TGTGCCCGCCGTTTCTTCGACAGTGAGAACTATGGCTACACCCTC CARRFFDSENYGYTL TRBV28*01 TRBJ1-2*01 5.0 318.0 CVVGVYGGGHGHLIF_CARRFFDSENYGYTL 1 7479 EBV-BRLF1 EBV 0.5 1264 NEG 166 7313 8 EBV BRLF1 YVLDHLIVV effector memory T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*02:01 B2M MHCI -1314 chip0420_767312 14.4 9.07 Chip1 T1D_1 T1D TGTGCCAGCAGTTCGGGACAGGTACTTCCCAATGAGCAGTTCTTC CASSSGQVLPNEQFF TRBV2*01 TRBJ2-1*01 22.0 1532.0 _CASSSGQVLPNEQFF 61 2997 EBV-BLMF1 EBV 1.0 2531 NEG 147 2850 12 EBV BLMF1 GLCTLVAML effector T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*02:01 B2M MHCI -1315 chip0420_356443 9.08 9.83 Chip1 T1D_1 T1D TGCAGCGTCGGCTCCAGGGGAACTAATGAAAAACTGTTTTTT CSVGSRGTNEKLFF TRBV29-1*01 TRBJ1-4*01 186.0 9853.0 _CSVGSRGTNEKLFF 283 3408 EBV-BLMF1 EBV 0.6 2531 NEG 159 3249 8 EBV BLMF1 GLCTLVAML effector memory T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*02:01 B2M MHCI -1316 chip0420_268450 13.53 10.83 Chip1 T1D_2 T1D TGTGCAGAGAGTACTTCGGGAGGAAAGCTTATCTTC CAESTSGGKLIF TRAV5*01 TRAJ23*01 20.0 1136.0 TGCAGCGTGGGGACAGGGGGAACTAATGAAAAACTGTTTTTT CSVGTGGTNEKLFF TRBV29-1*01 TRBJ1-4*01 43.0 1833.0 CAESTSGGKLIF_CSVGTGGTNEKLFF 107 3244 EBV-BLMF1 EBV 0.58 2531 NEG 176 3068 9 EBV BLMF1 GLCTLVAML effector memory T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*02:01 B2M MHCI -1317 chip0420_291056 12.69 7.09 Chip1 T1D_2 T1D TGTGCAGCATACGCAGGCAACATGCTCACCTTT CAAYAGNMLTF TRAV29/DV5*01 TRAJ39*01 3.0 318.0 TGCGCCAGCAGGATGGGGGCCGGGGATACGCAGTATTTT CASRMGAGDTQYF TRBV10-2*01 TRBJ2-3*01 42.0 2175.0 CAAYAGNMLTF_CASRMGAGDTQYF 21 3262 EBV-BLMF1 EBV 0.57 2531 NEG 184 3078 10 EBV BLMF1 GLCTLVAML effector memory T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*02:01 B2M MHCI -1318 chip0420_669225 -1.99 8.38 Chip1 T1D_1 T1D TGTGCAGCGTCTATATCTAACTTTGGAAATGAGAAATTAACCTTT CAASISNFGNEKLTF TRAV12-3*01 TRAJ48*01 52.0 1991.0 CAASISNFGNEKLTF_ 1 5895 PGT-178 PGT 0.86 1480 PGT-178 165 5730 3 HomoSapiens PGT LLAGIGTVPI Naive T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*02:01 B2M MHCI -1319 chip0420_470304 6.51 13.87 Chip1 T1D_1 T1D TGTGCCAGTAGTATCAGATCCTCCTACGAGCAGTACTTC CASSIRSSYEQYF TRBV19*01 TRBJ2-7*01 22.0 1391.0 _CASSIRSSYEQYF 36 3640 M1 FLU 0.71 1250 M1 180 3460 7 InfluenzaA M1 GILGFVFTL transitional T cells between effector and memory populations PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*02:01 B2M MHCI -1320 chip0420_699652 15.53 12.4 Chip1 T1D_2 T1D TGTGCCAGCAGTGAATGGACAGGGTATCAGCCCCAGCATTTT CASSEWTGYQPQHF TRBV6-1*01 TRBJ1-5*01 26.0 909.0 _CASSEWTGYQPQHF 9 1714 EBV-BLMF1 EBV 0.5 2531 NEG 166 1548 12 EBV BLMF1 GLCTLVAML effector T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*02:01 B2M MHCI -1321 chip0420_529543 13.29 7.65 Chip1 T1D_2 T1D TGTGCCTTCGGCGGACTGACCTTT CAFGGLTF TRAV8-1*01 TRAJ22*01 26.0 2083.0 TGTGCCAGCAGCCCCTCGACTAGCGGGAGTGGGGAGACCCAGTACTTC CASSPSTSGSGETQYF TRBV3-1*01 TRBJ2-5*01 30.0 1706.0 CAFGGLTF_CASSPSTSGSGETQYF 3 2822 EBV-BRLF1 EBV 0.96 1264 EBV-BRLF1 193 2629 10 EBV BRLF1 YVLDHLIVV effector memory T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*02:01 B2M MHCI -1322 chip0420_163741 12.47 7.35 Chip1 T1D_2 T1D TGTGTGGTGAACGGCAGGGATAGCAGCTATAAATTGATCTTC CVVNGRDSSYKLIF TRAV12-1*01 TRAJ12*01 115.0 5449.0 TGTGCCAGCAGCTCGGGACTAGTCGCCCCCGGGGAGCTGTTTTTT CASSSGLVAPGELFF TRBV2*01 TRBJ2-2*01 137.0 8174.0 CVVNGRDSSYKLIF_CASSSGLVAPGELFF 98 3034 EBV-BLMF1 EBV 1.0 2531 NEG 183 2851 10 EBV BLMF1 GLCTLVAML effector memory T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*02:01 B2M MHCI -1323 chip0420_74926 -1.81 8.89 Chip1 T1D_1 T1D TGTGCCAGCAGTCCGTGGGCAGCTATGGGCTACACCTT CASSPWg?cSYGLHL TRBV28*01 TRBJ1-2*01 19.0 1117.0 _CASSPWg?cSYGLHL 1 5791 EBV-LMP1-1 EBV 0.68 237 NEG 170 5621 3 EBV LMP1 YLLEMLWRL Naive T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*02:01 B2M MHCI -1324 chip0420_865150 5.99 13.84 Chip1 T1D_1 T1D CTGTGCCAGTAGTACCGGGACACCTGTCTTCTTC LCQ*Ycg??ggTPVFF TRBV19*01 TRBJ2-1*01 23.0 1967.0 _LCQ*Ycg??ggTPVFF 1 4055 M1 FLU 0.91 1250 M1 164 3891 7 InfluenzaA M1 GILGFVFTL transitional T cells between effector and memory populations PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*02:01 B2M MHCI -1325 chip0420_514465 8.14 11.22 Chip1 T1D_1 T1D TGTGCCAGCAGTTCGGGACAGGTACTTCCCAATGAGCAGTTCTTC CASSSGQVLPNEQFF TRBV2*01 TRBJ2-1*01 35.0 1976.0 _CASSSGQVLPNEQFF 61 5244 EBV-BLMF1 EBV 0.71 2531 NEG 165 5079 7 EBV BLMF1 GLCTLVAML transitional T cells between effector and memory populations PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*02:01 B2M MHCI -1326 chip0420_227983 15.46 9.09 Chip1 T1D_1 T1D TGTGCCAGCAGCACGGGACAGCTATCGAACACCGGGGAGCTGTTTTTT CASSTGQLSNTGELFF TRBV9*01 TRBJ2-2*01 26.0 1294.0 _CASSTGQLSNTGELFF 82 3861 EBV-BLMF1 EBV 0.83 2531 EBV-BLMF1 168 3693 12 EBV BLMF1 GLCTLVAML effector T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*02:01 B2M MHCI -1327 chip0420_104648 10.49 10.9 Chip1 T1D_2 T1D TGTGCAGAGATAAAGGCAGGCAACATGCTCACCTTT CAEIKAGNMLTF TRAV13-2*01 TRAJ39*01 2.0 345.0 TGCGCCAGCAGTCAAGAGATGGGGTGATGAACACTGAAGCTTTCTTT CASSQEMgg?VMNTEAFF TRBV4-3*01 TRBJ1-1*01 38.0 1736.0 CAEIKAGNMLTF_CASSQEMgg?VMNTEAFF 1 2725 EBV-BRLF1 EBV 0.93 1264 NEG 161 2564 9 EBV BRLF1 YVLDHLIVV effector memory T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*02:01 B2M MHCI -1328 chip0420_299526 -2.45 9.38 Chip1 T1D_1 T1D TGTGCCTGGAGTCGAGGGAACACTGAAGCTTTCTTT CAWSRGNTEAFF TRAV41*01 TRAJ40*01 3.0 10.0 TGTGCCTGGAGTCGAGGGAACACTGAAGCTTTCTTT CAWSRGNTEAFF TRBV30*01 TRBJ1-1*01 62.0 3068.0 CAWSRGNTEAFF_CAWSRGNTEAFF 1 5988 CVB3-P3A CVB 0.44 77 NEG 177 5811 3 CoxsackievirusB P3A GIIYIIYKL Naive T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*02:01 B2M MHCI -1329 chip0420_768622 7.24 10.44 Chip1 T1D_2 T1D TGTGCAGATCTCCGGGGTGGCCGGCTTATCTTC CADLRGGRLIF TRAV5*01 TRAJ23*01 1.0 28.0 TGCAGCGTTGGAGGCACATTCTATGGCTACACCTTC CSVGGTFYGYTF TRBV29-1*01 TRBJ1-2*01 34.0 3386.0 CADLRGGRLIF_CSVGGTFYGYTF 1 6042 EBV-BLMF1 EBV 0.55 2531 NEG 185 5857 7 EBV BLMF1 GLCTLVAML transitional T cells between effector and memory populations PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*02:01 B2M MHCI -1330 chip0420_742081 5.89 13.05 Chip1 T1D_1 T1D TGTGCCAGTAGTATGCGGTCCGCCTACGAGCAGTACTCG CASSMRSAYEQYS TRBV19*01 TRBJ2-7*01 22.0 1502.0 _CASSMRSAYEQYS 1 7234 M1 FLU 0.81 1250 M1 204 7030 7 InfluenzaA M1 GILGFVFTL transitional T cells between effector and memory populations PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*02:01 B2M MHCI -1331 chip0420_308282 0.28 4.25 Chip1 T1D_1 T1D _ 6746 7833 HCV-K1Y HCV 0.43 15 NEG 191 7642 5 HCV POL YLVALGINAV natural killer-like T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*02:01 B2M MHCI -1332 chip0420_232033 15.33 11.04 Chip1 T1D_1 T1D _ 6746 2402 EBV-BLMF1 EBV 0.62 2531 NEG 139 2263 12 EBV BLMF1 GLCTLVAML effector T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*02:01 B2M MHCI -1333 chip0420_707526 9.7 10.92 Chip1 T1D_1 T1D TGCAGCGTCGGCTCCAGGGGAACTAATGAAAAACTGTTTTTT CSVGSRGTNEKLFF TRBV29-1*01 TRBJ1-4*01 182.0 11739.0 _CSVGSRGTNEKLFF 283 3373 EBV-BLMF1 EBV 1.0 2531 NEG 166 3207 9 EBV BLMF1 GLCTLVAML effector memory T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*02:01 B2M MHCI -1334 chip0420_525422 9.91 9.49 Chip1 T1D_1 T1D TGTGCCACCCAACAGGGGAGGGACAGTCAGCCCCAGCATTTT CATQQGRDSQPQHF TRBV28*01 TRBJ1-5*01 27.0 1135.0 _CATQQGRDSQPQHF 52 3749 EBV-BLMF1 EBV 0.41 2531 NEG 185 3564 8 EBV BLMF1 GLCTLVAML effector memory T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*02:01 B2M MHCI -1335 chip0420_190246 9.43 10.26 Chip1 T1D_1 T1D TGTGCCAGCAGTGAGGCATTTCTAGCGGACAATGAGCAGTTCTTC CASSEAFLADNEQFF TRBV6-4*01 TRBJ2-1*01 50.0 3106.0 _CASSEAFLADNEQFF 6 5292 EBV-BRLF1 EBV 1.0 1264 NEG 167 5125 9 EBV BRLF1 YVLDHLIVV effector memory T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*02:01 B2M MHCI -1336 chip0420_668099 13.13 8.72 Chip1 T1D_2 T1D TGAGCTGTGGGGCAGAGAAGACTTT *AVG??cREDF TRAV2*01 TRAJ11*01,TRAJ14*01 2.0 27.0 TGCGCCAGCAGGATGGGGGCCGGGGATACGCAGTATTTT CASRMGAGDTQYF TRBV10-2*01 TRBJ2-3*01 2.0 29.0 *AVG??cREDF_CASRMGAGDTQYF 1 2743 EBV-BLMF1 EBV 0.57 2531 NEG 187 2556 10 EBV BLMF1 GLCTLVAML effector memory T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*02:01 B2M MHCI -1337 chip0420_587977 13.84 7.29 Chip1 T1D_1 T1D TGCGGCACAGAGGAACCTAACGACTACAAGCTCAGCTTT CGTEEPNDYKLSF TRAV30*01 TRAJ20*01 25.0 1897.0 TGTGCCAGCAGCACGGGACAGCTATCGAACACCGGGGAGCTGTTTTTT CASSTGQLSNTGELFF TRBV9*01 TRBJ2-2*01 39.0 1821.0 CGTEEPNDYKLSF_CASSTGQLSNTGELFF 18 3226 EBV-BLMF1 EBV 0.78 2531 NEG 185 3041 10 EBV BLMF1 GLCTLVAML effector memory T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*02:01 B2M MHCI -1338 chip0420_322824 -3.34 8.83 Chip1 T1D_2 T1D TGTGCAACGAGTTCTGGTGGCTACAATAAGCTGATTTTT CATSSGGYNKLIF TRAV12-3*01 TRAJ4*01 25.0 1489.0 CATSSGGYNKLIF_ 1 5482 PGT-178 PGT 0.79 1480 PGT-178 164 5318 2 HomoSapiens PGT LLAGIGTVPI Naive T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*02:01 B2M MHCI -1339 chip0420_812505 10.88 10.6 Chip1 T1D_1 T1D TGTGCCAGCAGCCCAGTTAGCGGGTCAACCTACGAGCAGTACTTC CASSPVSGSTYEQYF TRBV3-1*01 TRBJ2-7*01 64.0 3518.0 _CASSPVSGSTYEQYF 80 3685 EBV-BLMF1 EBV 0.92 2531 EBV-BLMF1 172 3513 9 EBV BLMF1 GLCTLVAML effector memory T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*02:01 B2M MHCI -1340 chip0420_475963 -1.5 10.5 Chip1 T1D_1 T1D TGTGCTTTCATGAAGGTCTGGGGCGGATCTGAAAAGCTGGTCTTT CAFMKVWGGSEKLVF TRAV38-1*01 TRAJ57*01 6.0 752.0 TGTGCCAGCAGTTACGCTGGGGGGCCAGTGAACACTGAAGCTTTCTTT CASSYAGGPVNTEAFF TRBV6-5*01 TRBJ1-1*01 69.0 2395.0 CAFMKVWGGSEKLVF_CASSYAGGPVNTEAFF 1 4354 EBV-LMP1-1 EBV 0.91 237 NEG 157 4197 3 EBV LMP1 YLLEMLWRL Naive T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*02:01 B2M MHCI -1341 chip0420_814149 4.82 11.02 Chip1 T1D_2 T1D TGTGCCGTGAACGGTGGAAACAAACTGGTCTTT CAVNGGNKLVF TRAV12-2*01 TRAJ47*01 62.0 4702.0 TGCAGTGCTGTGACAGGGGGAGGTGGCACTGAAGCTTTCTTT CSAVTGGGGTEAFF TRBV20-1*01 TRBJ1-1*01 38.0 1955.0 CAVNGGNKLVF_CSAVTGGGGTEAFF 8 4833 MART1-ALA MART1 0.82 269 NEG 164 4669 6 HomoSapiens MART1 ALAGIGILTV central memory T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*02:01 B2M MHCI -1342 chip0420_859246 15.91 10.2 Chip1 T1D_2 T1D TGCAGCGTGGGGACAGGGGGAACTAATGAAAAACTGTTTTTT CSVGTGGTNEKLFF TRBV29-1*01 TRBJ1-4*01 106.0 4556.0 _CSVGTGGTNEKLFF 638 2389 EBV-BLMF1 EBV 0.55 2531 NEG 168 2221 12 EBV BLMF1 GLCTLVAML effector T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*02:01 B2M MHCI -1343 chip0420_816889 11.73 7.38 Chip1 T1D_2 T1D TGTGCTGTGGGTGGCAGGACCTACCATTTCATCTTT CAVGGRTYHFIF TRAV8-3*01 TRAJ40*01 14.0 1002.0 TGTGCCAGCAGTTGGACAGCCTCCTACGAGCAGTACTTC CASSWTASYEQYF TRBV6-2*01,TRBV6-3*01 TRBJ2-7*01 12.0 507.0 CAVGGRTYHFIF_CASSWTASYEQYF 1 2936 EBV-BRLF1 EBV 0.95 1264 EBV-BRLF1 189 2747 10 EBV BRLF1 YVLDHLIVV effector memory T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*02:01 B2M MHCI -1344 chip0420_153838 11.19 7.47 Chip1 T1D_2 T1D TGTGCTGTGAGTGCACCCTAAATAACAATGCCAGACTCATGTTT CAVSAP*a?tNNARLMF TRAV8-6*01 TRAJ31*01 79.0 2972.0 CAVSAP*a?tNNARLMF_ 1 4421 EBV-BRLF1 EBV 1.0 1264 EBV-BRLF1 165 4256 10 EBV BRLF1 YVLDHLIVV effector memory T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*02:01 B2M MHCI -1345 chip0420_833180 14.17 10.11 Chip1 T1D_1 T1D TGTGCCATCAGTGCGGGGACGCTGAGCTCCTACAATGAGCAGTTCCTC CAISAGTLSSYNEQFL TRBV10-3*01 TRBJ2-1*01 10.0 455.0 _CAISAGTLSSYNEQFL 1 2442 EBV-BRLF1 EBV 1.0 1264 NEG 175 2267 12 EBV BRLF1 YVLDHLIVV effector T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*02:01 B2M MHCI -1346 chip0420_495749 13.83 12.96 Chip1 T1D_1 T1D TGTGTGGTGAACGGACGGGATAGCAGCTATAAATTGATCTTC CVVNGRDSSYKLIF TRAV12-1*01 TRAJ12*01 51.0 2298.0 TGCAGCGTCGGCTCCAGGGGAACTAATGAAAAACTGTTTTTT CSVGSRGTNEKLFF TRBV29-1*01 TRBJ1-4*01 1.0 30.0 CVVNGRDSSYKLIF_CSVGSRGTNEKLFF 1 2145 EBV-BLMF1 EBV 0.6 2531 NEG 162 1983 12 EBV BLMF1 GLCTLVAML effector T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*02:01 B2M MHCI -1347 chip0420_440390 9.48 11.19 Chip1 T1D_2 T1D TGTGTGGTGAACGGGGGGGATAGCAGCTATAAATTGATCTTC CVVNGGDSSYKLIF TRAV12-1*01 TRAJ12*01 26.0 946.0 TGTGCCAGTAGTGGGTTCAATGAGCAGTTCTTC CASSGFNEQFF TRBV19*01 TRBJ2-1*01 25.0 1667.0 CVVNGGDSSYKLIF_CASSGFNEQFF 1 3169 EBV-BRLF1 EBV 0.77 1264 EBV-BRLF1 181 2988 9 EBV BRLF1 YVLDHLIVV effector memory T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*02:01 B2M MHCI -1348 chip0420_437349 12.46 7.23 Chip1 T1D_1 T1D TGTGCCAGCAGTTCCGGAGGGAACGTGGATACGCAGTATTTT CASSSGGNVDTQYF TRBV7-3*01 TRBJ2-3*01 22.0 1063.0 _CASSSGGNVDTQYF 47 3373 EBV-BLMF1 EBV 0.86 2531 NEG 178 3195 10 EBV BLMF1 GLCTLVAML effector memory T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*02:01 B2M MHCI -1349 chip0420_126386 8.58 9.95 Chip1 T1D_2 T1D TGTGCCTGGAGTGTACAGCTAGCGGGAGTAGACGAGCAGTACTTC CAWSVQLAGVDEQYF TRBV30*01 TRBJ2-7*01 58.0 3143.0 _CAWSVQLAGVDEQYF 11 4219 EBV-BRLF1 EBV 0.92 1264 EBV-BRLF1 159 4060 8 EBV BRLF1 YVLDHLIVV effector memory T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*02:01 B2M MHCI -1350 chip0420_83243 9.77 11.21 Chip1 T1D_2 T1D _ 6746 3537 EBV-BRLF1 EBV 0.89 1264 EBV-BRLF1 176 3361 9 EBV BRLF1 YVLDHLIVV effector memory T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*02:01 B2M MHCI -1351 chip0420_155364 15.23 9.86 Chip1 T1D_2 T1D TGCGCAATGAGAGAGGGCACGGGCAACTTCAACAAATTTTACTTT CAMREGTGNFNKFYF TRAV14/DV4*01 TRAJ21*01 40.0 2044.0 TGTGCCAGCAAGGGGATCGATGGCTACACCTTC CASKGIDGYTF TRBV13*01 TRBJ1-2*01 1.0 13.0 CAMREGTGNFNKFYF_CASKGIDGYTF 6 2517 EBV-BRLF1 EBV 1.0 1264 EBV-BRLF1 166 2351 12 EBV BRLF1 YVLDHLIVV effector T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*02:01 B2M MHCI -1352 chip0420_838787 16.05 9.88 Chip1 T1D_2 T1D TGTGCCAGCAGCTCGGGACTAGTCGCCCCCGGGGAGCTGTTTTTT CASSSGLVAPGELFF TRBV2*01 TRBJ2-2*01 106.0 5950.0 _CASSSGLVAPGELFF 133 2335 EBV-BLMF1 EBV 0.6 2531 NEG 164 2171 12 EBV BLMF1 GLCTLVAML effector T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*02:01 B2M MHCI -1353 chip0420_236770 9.12 10.03 Chip1 T1D_1 T1D _ 6746 4159 EBV-BRLF1 EBV 0.84 1264 EBV-BRLF1 177 3982 8 EBV BRLF1 YVLDHLIVV effector memory T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*02:01 B2M MHCI -1354 chip0420_639362 6.94 13.43 Chip1 T1D_1 T1D _ 6746 3014 M1 FLU 0.75 1250 M1 148 2866 7 InfluenzaA M1 GILGFVFTL transitional T cells between effector and memory populations PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*02:01 B2M MHCI -1355 chip0420_867700 9.49 10.33 Chip1 T1D_2 T1D TGCGCCAGCAGAGCGGGAGCCGGGGATACGCAGTATTTT CASRAGAGDTQYF TRBV10-2*01 TRBJ2-3*01 35.0 1834.0 _CASRAGAGDTQYF 59 4025 EBV-BLMF1 EBV 0.5 2531 NEG 165 3860 9 EBV BLMF1 GLCTLVAML effector memory T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*02:01 B2M MHCI -1356 chip0420_780317 -0.63 10.65 Chip1 T1D_1 T1D _ 6746 5419 MART1-ALA MART1 0.49 269 MART1-ALA 153 5266 3 HomoSapiens MART1 ALAGIGILTV Naive T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*02:01 B2M MHCI -1357 chip0420_102345 14.56 10.81 Chip1 T1D_2 T1D TGTGCCTGGAGTGACCAACTAGGGGCGGCACGGGAGCTGTTTTTT CAWSDQLGAARELFF TRBV30*01 TRBJ2-2*01 38.0 1648.0 _CAWSDQLGAARELFF 7 3887 EBV-BRLF1 EBV 0.96 1264 EBV-BRLF1 156 3731 12 EBV BRLF1 YVLDHLIVV effector T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*02:01 B2M MHCI -1358 chip0420_35224 9.11 9.69 Chip1 T1D_2 T1D TGTGCAGAGAGTACTTCGGGAGGAAAGCTTATCTTC CAESTSGGKLIF TRAV5*01 TRAJ23*01 27.0 2082.0 TGCAGCGTGGGGACAGGGGGAACTAATGAAAAACTGTTTTTT CSVGTGGTNEKLFF TRBV29-1*01 TRBJ1-4*01 101.0 3722.0 CAESTSGGKLIF_CSVGTGGTNEKLFF 107 4834 EBV-BLMF1 EBV 0.67 2531 NEG 188 4646 8 EBV BLMF1 GLCTLVAML effector memory T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*02:01 B2M MHCI -1359 chip0420_767335 12.74 10.78 Chip1 T1D_1 T1D _ 6746 3854 EBV-BLMF1 EBV 0.77 2531 NEG 165 3689 9 EBV BLMF1 GLCTLVAML effector memory T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*02:01 B2M MHCI -1360 chip0420_183190 13.85 13.37 Chip1 T1D_2 T1D TGTGCCGTGAAGGACACCGACAAGCTCATCTTT CAVKDTDKLIF TRAV8-1*01 TRAJ34*01 25.0 2128.0 TGTGCCAGCAGCCTACAGGCCGCTAACTATGGCTACACCTTC CASSLQAANYGYTF TRBV3-1*01 TRBJ1-2*01 48.0 3711.0 CAVKDTDKLIF_CASSLQAANYGYTF 2 1518 EBV-BRLF1 EBV 0.88 1264 EBV-BRLF1 156 1362 12 EBV BRLF1 YVLDHLIVV effector T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*02:01 B2M MHCI -1361 chip0420_116228 11.85 10.62 Chip1 T1D_2 T1D TGCAGCGTCGGCTCCAGGGGAACTAATGAAAAACTGTTTTTT CSVGSRGTNEKLFF TRBV29-1*01 TRBJ1-4*01 45.0 2441.0 _CSVGSRGTNEKLFF 283 3509 EBV-BLMF1 EBV 0.5 2531 NEG 190 3319 9 EBV BLMF1 GLCTLVAML effector memory T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*02:01 B2M MHCI -1362 chip0420_293528 -1.87 9.12 Chip1 T1D_1 T1D TGTGCCAGCCCGGGACGCGGGAACACTGAAGCTTTCTTT CASPGRGNTEAFF TRBV7-9*01 TRBJ1-1*01 24.0 1200.0 _CASPGRGNTEAFF 1 3937 ZNT8-16-24 ZNT8 0.75 39 ZNT8-16-24 167 3770 3 HomoSapiens ZNT8 KMYAFTLES Naive T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*02:01 B2M MHCI -1363 chip0420_271230 16.06 9.92 Chip1 T1D_1 T1D TATGCCAGCAGCACGGGACAGCTATCGAACACCGGGGAGCTGTTTTTT YASSTGQLSNTGELFF TRBV9*01 TRBJ2-2*01 6.0 169.0 _YASSTGQLSNTGELFF 2 2957 EBV-BLMF1 EBV 0.7 2531 NEG 175 2782 12 EBV BLMF1 GLCTLVAML effector T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*02:01 B2M MHCI -1364 chip0420_691444 11.44 7.01 Chip1 T1D_2 T1D TGCAGCGTGGGGACAGGGGGAACTAATGAAAAACTGTTTTTT CSVGTGGTNEKLFF TRBV29-1*01 TRBJ1-4*01 29.0 1606.0 _CSVGTGGTNEKLFF 638 3754 EBV-BLMF1 EBV 0.5 2531 NEG 191 3563 10 EBV BLMF1 GLCTLVAML effector memory T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*02:01 B2M MHCI -1365 chip0420_563244 14.09 7.65 Chip1 T1D_1 T1D TGTGTGGTGAACGGGGGGGATAGCAGCTATAAATTGATCTTC CVVNGGDSSYKLIF TRAV12-1*01 TRAJ12*01 42.0 2031.0 TGTGCCAGCAGTTCGGGACAGGTACTTCCCAATGAGCAGTTCTTC CASSSGQVLPNEQFF TRBV2*01 TRBJ2-1*01 25.0 1759.0 CVVNGGDSSYKLIF_CASSSGQVLPNEQFF 31 3650 EBV-BLMF1 EBV 0.57 2531 NEG 177 3473 10 EBV BLMF1 GLCTLVAML effector memory T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*02:01 B2M MHCI -1366 chip0420_494823 14.51 9.92 Chip1 T1D_2 T1D _ 6746 3255 EBV-BRLF1 EBV 0.8 1264 NEG 160 3095 12 EBV BRLF1 YVLDHLIVV effector T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*02:01 B2M MHCI -1367 chip0420_27951 -3.1 11.45 Chip1 T1D_1 T1D TGTGTGGTGAGCATAGGCTTT CVVSIGF TRAV12-1*01 TRAJ27*01 3.0 16.0 CVVSIGF_ 1 4148 PGT-178 PGT 0.53 1480 PGT-178 169 3979 1 HomoSapiens PGT LLAGIGTVPI Naive T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*02:01 B2M MHCI -1368 chip0420_813543 6.25 13.26 Chip1 T1D_1 T1D _ 6746 4298 M1 FLU 0.89 1250 M1 209 4089 7 InfluenzaA M1 GILGFVFTL transitional T cells between effector and memory populations PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*02:01 B2M MHCI -1369 chip0420_878072 10.88 10.6 Chip1 T1D_1 T1D TGTGCCAGCAGCCAAAGCCCGGGTGGTACGCAGTATTTT CASSQSPGGTQYF TRBV14*01 TRBJ2-3*01 5.0 218.0 _CASSQSPGGTQYF 94 4618 EBV-BLMF1 EBV 0.71 2531 NEG 161 4457 9 EBV BLMF1 GLCTLVAML effector memory T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*02:01 B2M MHCI -1370 chip0420_393434 5.8 12.0 Chip1 T1D_1 T1D TGTGCCAGTAGTATCTTTAGCGGGGGCGCTTACAATGAGCAGTTCTTC CASSIFSGGAYNEQFF TRBV19*01 TRBJ2-1*01 17.0 563.0 _CASSIFSGGAYNEQFF 1 6348 M1 FLU 0.47 1250 NEG 147 6201 7 InfluenzaA M1 GILGFVFTL transitional T cells between effector and memory populations PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*02:01 B2M MHCI -1371 chip0420_7628 9.76 10.98 Chip1 T1D_2 T1D TGCGCCAGCAGGATGGGGGCCGGGGATACGCAGTATTTT CASRMGAGDTQYF TRBV10-2*01 TRBJ2-3*01 63.0 4374.0 _CASRMGAGDTQYF 90 2855 EBV-BLMF1 EBV 0.83 2531 NEG 155 2700 9 EBV BLMF1 GLCTLVAML effector memory T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*02:01 B2M MHCI -1372 chip0420_799903 9.82 9.78 Chip1 T1D_1 T1D TGTGCCACCCAACAGGGGAGGGACAGTCAGCCCCAGCATTTT CATQQGRDSQPQHF TRBV28*01 TRBJ1-5*01 24.0 1385.0 _CATQQGRDSQPQHF 52 5272 EBV-BLMF1 EBV 0.8 2531 NEG 173 5099 8 EBV BLMF1 GLCTLVAML effector memory T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*02:01 B2M MHCI -1373 chip0420_514009 8.48 10.01 Chip1 T1D_2 T1D TGTGCCGTGAAGGACACCGACAAGCTCATCTTT CAVKDTDKLIF TRAV8-1*01 TRAJ34*01 5.0 432.0 CAVKDTDKLIF_ 56 5036 EBV-BRLF1 EBV 1.0 1264 NEG 198 4838 8 EBV BRLF1 YVLDHLIVV effector memory T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*02:01 B2M MHCI -1374 chip0420_470208 14.04 10.39 Chip1 T1D_1 T1D TGTGCCAGCAGCCCAGTTAGCGGGTCAACCTACGAGCAGTACTTC CASSPVSGSTYEQYF TRBV3-1*01 TRBJ2-7*01 17.0 663.0 _CASSPVSGSTYEQYF 80 3750 EBV-BLMF1 EBV 0.6 2531 NEG 157 3593 12 EBV BLMF1 GLCTLVAML effector T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*02:01 B2M MHCI -1375 chip0420_454064 11.04 9.75 Chip1 T1D_1 T1D TGCGGCACAGAGGAACCTAACGACTACAAGCTCAGCTTT CGTEEPNDYKLSF TRAV30*01 TRAJ20*01 25.0 2117.0 TGTGCCAGCAGCACGGGACAGCTATCGAACACCGGGGAGCTGTTTTTT CASSTGQLSNTGELFF TRBV9*01 TRBJ2-2*01 37.0 1629.0 CGTEEPNDYKLSF_CASSTGQLSNTGELFF 18 3269 EBV-BLMF1 EBV 0.73 2531 NEG 173 3096 9 EBV BLMF1 GLCTLVAML effector memory T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*02:01 B2M MHCI -1376 chip0420_463403 13.56 10.81 Chip1 T1D_2 T1D TGTGCAGCGTATGCAGGCAACATGCTCACCTTT CAAYAGNMLTF TRAV29/DV5*01 TRAJ39*01 30.0 3059.0 TGCGCCAGCAGAGCGGGCGCCGGGGATACGCAGTATTTT CASRAGAGDTQYF TRBV10-2*01 TRBJ2-3*01 42.0 1690.0 CAAYAGNMLTF_CASRAGAGDTQYF 18 3202 EBV-BLMF1 EBV 1.0 2531 NEG 158 3044 9 EBV BLMF1 GLCTLVAML effector memory T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*02:01 B2M MHCI -1377 chip0420_262553 6.77 12.07 Chip1 T1D_1 T1D _ 6746 4959 M1 FLU 0.83 1250 M1 169 4790 7 InfluenzaA M1 GILGFVFTL transitional T cells between effector and memory populations PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*02:01 B2M MHCI -1378 chip0420_880780 11.78 8.28 Chip1 T1D_2 T1D TGTGCAGCGTATGCAGGCAACCTGCTCACCTTT CAAYAGNLLTF TRAV29/DV5*01 TRAJ39*01 20.0 2067.0 TGCGCCAGCAGAGCGGGCGCCGGGGATACGCAGTATTTT CASRAGAGDTQYF TRBV10-2*01 TRBJ2-3*01 16.0 1056.0 CAAYAGNLLTF_CASRAGAGDTQYF 1 2201 EBV-BLMF1 EBV 0.67 2531 NEG 189 2012 10 EBV BLMF1 GLCTLVAML effector memory T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*02:01 B2M MHCI -1379 chip0420_464890 14.73 10.77 Chip1 T1D_2 T1D TGTGCCAGCAGCTCGGGACTAGTCGCCCCCGGGGAGCTGTTTTTT CASSSGLVAPGELFF TRBV2*01 TRBJ2-2*01 15.0 678.0 _CASSSGLVAPGELFF 133 2497 EBV-BLMF1 EBV 0.43 2531 NEG 178 2319 12 EBV BLMF1 GLCTLVAML effector T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*02:01 B2M MHCI -1380 chip0420_275726 -0.79 9.17 Chip1 T1D_1 T1D TGTGCAATGAGCGCGTCTAACTTTGGAAATGAGAAATTAACCTTT CAMSASNFGNEKLTF TRAV12-3*01 TRAJ48*01 124.0 4259.0 TGTGCCAGCAGCTTCGGGCGGGAGTACCAAGAGACCCAGTACTTC CASSFGREYQETQYF TRBV5-6*01 TRBJ2-5*01 10.0 523.0 CAMSASNFGNEKLTF_CASSFGREYQETQYF 1 4146 PGT-178 PGT 0.44 1480 PGT-178 182 3964 4 HomoSapiens PGT LLAGIGTVPI Naive T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*02:01 B2M MHCI -1381 chip0420_303613 14.8 8.64 Chip1 T1D_2 T1D TGCAGCGTGGGGACAGGGGGAACTAATGAAAAACTGTTTTTT CSVGTGGTNEKLFF TRBV29-1*01 TRBJ1-4*01 85.0 3475.0 _CSVGTGGTNEKLFF 638 3162 EBV-BLMF1 EBV 0.64 2531 NEG 163 2999 12 EBV BLMF1 GLCTLVAML effector T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*02:01 B2M MHCI -1382 chip0420_541995 14.66 12.05 Chip1 T1D_1 T1D TGTGCCAGCAGTGACGGTCGGGTCCACCCGGGGACCCAGTACTTC CASSDGRVHPGTQYF TRBV2*01 TRBJ2-5*01 16.0 1714.0 _CASSDGRVHPGTQYF 24 2344 EBV-BLMF1 EBV 0.5 2531 NEG 144 2200 12 EBV BLMF1 GLCTLVAML effector T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*02:01 B2M MHCI -1383 chip0420_364072 15.74 9.78 Chip1 T1D_1 T1D TGTGCCAGCAGCACGGGACAGCTATCGAACACCGGGGAGCTGTTTTTT CASSTGQLSNTGELFF TRBV9*01 TRBJ2-2*01 79.0 4417.0 _CASSTGQLSNTGELFF 82 2658 EBV-BLMF1 EBV 0.64 2531 NEG 151 2507 12 EBV BLMF1 GLCTLVAML effector T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*02:01 B2M MHCI -1384 chip0420_635789 12.6 8.53 Chip1 T1D_2 T1D TCTGCCCGCAGTGACGGCTTTAATACCTACGAGCAGTACTTC SARSDGFNTYEQYF TRBV6-1*01 TRBJ2-7*01 6.0 96.0 _SARSDGFNTYEQYF 1 2205 EBV-BRLF1 EBV 0.93 1264 EBV-BRLF1 171 2034 10 EBV BRLF1 YVLDHLIVV effector memory T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*02:01 B2M MHCI -1385 chip0420_147703 10.99 10.43 Chip1 T1D_1 T1D _ 6746 3636 EBV-BLMF1 EBV 0.73 2531 NEG 170 3466 9 EBV BLMF1 GLCTLVAML effector memory T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*02:01 B2M MHCI -1386 chip0420_837445 -2.29 13.39 Chip1 T1D_1 T1D TGTGCCAGCAGCGTGCGGGGGGGTCACAATGAGCAGTTCTTC CASSVRGGHNEQFF TRBV9*01 TRBJ2-1*01 29.0 1721.0 _CASSVRGGHNEQFF 1 2839 INS-6-16 INS 0.47 20 INS-6-16 161 2678 1 HomoSapiens INS RLLPLLALLAL Naive T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*02:01 B2M MHCI -1387 chip0420_305465 15.25 10.58 Chip1 T1D_2 T1D TGTGCAGATAAGGAATGGGTCTTATAGGAAAGTTGCCTTT CADKEWgt??ctYRKVAF TRAV5*01 TRAJ13*01 4.0 310.0 TGCAGCGTGGGGACAGGGGGAACTAATGAAAAACTGTTTTTT CSVGTGGTNEKLFF TRBV29-1*01 TRBJ1-4*01 93.0 5847.0 CADKEWgt??ctYRKVAF_CSVGTGGTNEKLFF 1 2552 EBV-BLMF1 EBV 0.7 2531 NEG 181 2371 12 EBV BLMF1 GLCTLVAML effector T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*02:01 B2M MHCI -1388 chip0420_579409 6.35 14.0 Chip1 T1D_1 T1D _ 6746 4594 M1 FLU 0.85 1250 M1 177 4417 7 InfluenzaA M1 GILGFVFTL transitional T cells between effector and memory populations PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*02:01 B2M MHCI -1389 chip0420_279903 15.29 8.91 Chip1 T1D_1 T1D TGTGCCAGCAGCACGGGACAGCTATCGAACACCGGGGAGCTGTTTTTT CASSTGQLSNTGELFF TRBV9*01 TRBJ2-2*01 52.0 2629.0 _CASSTGQLSNTGELFF 82 2443 EBV-BLMF1 EBV 0.67 2531 NEG 163 2280 12 EBV BLMF1 GLCTLVAML effector T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*02:01 B2M MHCI -1390 chip0420_392641 13.18 7.41 Chip1 T1D_1 T1D TGTGCCAGTAGTGTCAGGGCAGGAGAGACCCAGTACTTC CASSVRAGETQYF TRBV19*01 TRBJ2-5*01 25.0 1364.0 _CASSVRAGETQYF 23 3506 M1 FLU 0.93 1250 M1 160 3346 10 InfluenzaA M1 GILGFVFTL effector memory T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*02:01 B2M MHCI -1391 chip0420_195615 12.34 7.72 Chip1 T1D_2 T1D TGTGCCAGCAGCCCCTCGACTAGCGGGAGTGGGGAGACCCAGTACTTC CASSPSTSGSGETQYF TRBV3-1*01 TRBJ2-5*01 61.0 3709.0 _CASSPSTSGSGETQYF 18 2725 EBV-BRLF1 EBV 0.93 1264 EBV-BRLF1 210 2515 10 EBV BRLF1 YVLDHLIVV effector memory T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*02:01 B2M MHCI -1392 chip0420_8392 13.23 8.02 Chip1 T1D_1 T1D TGTGCCAGCAGCCAAAGCCCGGGTGGTACGCAGTATTTT CASSQSPGGTQYF TRBV14*01 TRBJ2-3*01 5.0 307.0 _CASSQSPGGTQYF 94 2714 EBV-BLMF1 EBV 0.71 2531 NEG 160 2554 10 EBV BLMF1 GLCTLVAML effector memory T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*02:01 B2M MHCI -1393 chip0420_775449 12.71 13.69 Chip1 T1D_2 T1D TGTGCAGCGTATGCAGGCAACATGCTCACCTTT CAAYAGNMLTF TRAV29/DV5*01 TRAJ39*01 1.0 20.0 TGCGCCAGCAGAGCGGGAGCCGGGGATACGCAGTATTTT CASRAGAGDTQYF TRBV10-2*01 TRBJ2-3*01 38.0 2119.0 CAAYAGNMLTF_CASRAGAGDTQYF 18 1501 EBV-BLMF1 EBV 0.6 2531 NEG 156 1345 11 EBV BLMF1 GLCTLVAML effector T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*02:01 B2M MHCI -1394 chip0420_589453 8.27 9.76 Chip1 T1D_2 T1D TGCGCCAGCAGGATGGGGGCCGGGGATACGCAGTATTTT CASRMGAGDTQYF TRBV10-2*01 TRBJ2-3*01 60.0 4494.0 _CASRMGAGDTQYF 90 5321 EBV-BLMF1 EBV 0.5 2531 NEG 202 5119 8 EBV BLMF1 GLCTLVAML effector memory T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*02:01 B2M MHCI -1395 chip0420_89484 9.58 10.47 Chip1 T1D_1 T1D TGTGCCAGCAGTGACGGTCGGGTCCACCCGGGGACCCAGTACTTC CASSDGRVHPGTQYF TRBV2*01 TRBJ2-5*01 36.0 1909.0 _CASSDGRVHPGTQYF 24 4978 EBV-BLMF1 EBV 0.91 2531 NEG 158 4820 9 EBV BLMF1 GLCTLVAML effector memory T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*02:01 B2M MHCI -1396 chip0420_762008 11.59 7.35 Chip1 T1D_2 T1D TGTGCTGTGAGTGAACCCTAAATAACAATGCCAGACTCATGTTT CAVSEP*a?tNNARLMF TRAV8-6*01 TRAJ31*01 1.0 12.0 TGTGCCTGGAGTGTACAGCTAGCGGGAGTAGACGAGCAGTACTTC CAWSVQLAGVDEQYF TRBV30*01 TRBJ2-7*01 48.0 1755.0 CAVSEP*a?tNNARLMF_CAWSVQLAGVDEQYF 2 3177 EBV-BRLF1 EBV 0.73 1264 NEG 180 2997 10 EBV BRLF1 YVLDHLIVV effector memory T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*02:01 B2M MHCI -1397 chip0420_553118 14.08 9.28 Chip1 T1D_1 T1D TGTGCAGCACCTCGGTGGGAGAAATTAACCTTT CAAPRWEKLTF TRAV13-1*01 TRAJ48*01 9.0 720.0 TGCAGTGCTGCCGACCAAACCTACAATGAGCAGTTCTTC CSAADQTYNEQFF TRBV20-1*01 TRBJ2-1*01 25.0 2101.0 CAAPRWEKLTF_CSAADQTYNEQFF 1 3672 EBV-BRLF1 EBV 0.98 1264 EBV-BRLF1 160 3512 12 EBV BRLF1 YVLDHLIVV effector T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*02:01 B2M MHCI -1398 chip0420_330050 10.31 10.06 Chip1 T1D_1 T1D TGTGCCAGCAGCACGGGACAGCTATCGAACACCGGGGAGCTGTTTTTT CASSTGQLSNTGELFF TRBV9*01 TRBJ2-2*01 33.0 1804.0 _CASSTGQLSNTGELFF 82 4016 EBV-BLMF1 EBV 0.65 2531 NEG 154 3862 9 EBV BLMF1 GLCTLVAML effector memory T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*02:01 B2M MHCI -1399 chip0420_583225 6.62 14.51 Chip1 T1D_2 T1D TGTGCCGTGTCCGGAGGCTTCAAAACTATCTTT CAVSGGFKTIF TRAV12-2*01 TRAJ9*01 28.0 2229.0 TGTGCCAGCATGGACTCCAACTCTGGAAACACCATATATTTT CASMDSNSGNTIYF TRBV2*01 TRBJ1-3*01 69.0 3650.0 CAVSGGFKTIF_CASMDSNSGNTIYF 3 2659 IAPP-5-13 IAPP 0.73 30 NEG 178 2481 7 HomoSapiens IAPP KLQVFLIVL transitional T cells between effector and memory populations PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*02:01 B2M MHCI -1400 chip0420_389753 15.73 12.17 Chip1 T1D_1 T1D TGTGCTCTCTATAACACCGACAAGCTCATCTTT CALYNTDKLIF TRAV9-2*01 TRAJ34*01 29.0 2126.0 TGTGCCAGCAGCCCAGTTAGCGGGTCAACCTACGAGCAGTACTTC CASSPVSGSTYEQYF TRBV3-1*01 TRBJ2-7*01 21.0 1097.0 CALYNTDKLIF_CASSPVSGSTYEQYF 15 987 EBV-BLMF1 EBV 1.0 2531 NEG 176 811 12 EBV BLMF1 GLCTLVAML effector T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*02:01 B2M MHCI -1401 chip0420_31699 7.11 10.09 Chip1 T1D_1 T1D TGTGCTGTGAGTGATCGGGATGGCGGCTTCAAAACTATCTTT CAVSDRDGGFKTIF TRAV8-4*01 TRAJ9*01 42.0 2132.0 TGTGCCCGTAGTATAAATGGGGGCCGGAGGATGGCTACACCTTC CARSINGg?gPEDGYTF TRBV19*01 TRBJ1-2*01 22.0 941.0 CAVSDRDGGFKTIF_CARSINGg?gPEDGYTF 1 7153 M1 FLU 0.88 1250 M1 160 6993 7 InfluenzaA M1 GILGFVFTL transitional T cells between effector and memory populations PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*02:01 B2M MHCI -1402 chip0420_578480 13.78 7.76 Chip1 T1D_2 T1D TGTGCAGCAAGTAGGGTGTGAAAGTTGATTTTT CAASRV*KLIF TRAV23/DV6*01 TRAJ4*01 3.0 411.0 CGCGCCAGCACCCCCACGCGGGACCGATTTACGAGCAGTACGTC RASTPTRg?aPIYEQYV TRBV4-3*01 TRBJ2-7*01 4.0 107.0 CAASRV*KLIF_RASTPTRg?aPIYEQYV 1 1793 EBV-BRLF1 EBV 0.8 1264 NEG 189 1604 10 EBV BRLF1 YVLDHLIVV effector memory T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*02:01 B2M MHCI -1403 chip0420_252743 12.99 13.65 Chip1 T1D_2 T1D TGTGCCGTGAAGGACACCGACAAGCTCATCTTT CAVKDTDKLIF TRAV8-1*01 TRAJ34*01 34.0 2128.0 TGCGCCAGCAGTCATCAGGCCTCCGAGCAGTACTTC CASSHQASEQYF TRBV10-1*01 TRBJ2-7*01 26.0 996.0 CAVKDTDKLIF_CASSHQASEQYF 2 1172 EBV-BRLF1 EBV 0.7 1264 NEG 180 992 11 EBV BRLF1 YVLDHLIVV effector T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*02:01 B2M MHCI -1404 chip0420_9597 8.21 11.83 Chip1 T1D_2 T1D TGTGCCTGGAGTGTACAGCTAGCGGGAGTAGACGAGCAGTACTTC CAWSVQLAGVDEQYF TRBV30*01 TRBJ2-7*01 30.0 1611.0 _CAWSVQLAGVDEQYF 11 3450 EBV-BRLF1 EBV 1.0 1264 NEG 163 3287 7 EBV BRLF1 YVLDHLIVV transitional T cells between effector and memory populations PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*02:01 B2M MHCI -1405 chip0420_445583 5.74 9.38 Chip1 T1D_1 T1D _ 6746 4884 EBV-LMP2-FLY EBV 0.9 355 EBV-LMP2-FLY 170 4714 6 EBV LMP2 FLYALALLL central memory T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*02:01 B2M MHCI -1406 chip0420_254862 11.34 6.91 Chip1 T1D_2 T1D TGTGCCGTTAAGGAGACAGGCAAACTAATCTTT CAVKETGKLIF TRAV8-1*01 TRAJ37*01 35.0 2110.0 CAVKETGKLIF_ 1 3406 EBV-BRLF1 EBV 1.0 1264 EBV-BRLF1 193 3213 10 EBV BRLF1 YVLDHLIVV effector memory T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*02:01 B2M MHCI -1407 chip0420_346028 5.97 13.31 Chip1 T1D_1 T1D TGTGCTGTGCGTGGTCGGCGTGGGGGCCTCACAACTACCTTT CAVRGRRGGLTTTF TRAV8-4*01,TRAV8-6*01 TRAJ9*01 4.0 181.0 TGTGCTGTGCCCCTGGGGGGTTTTCTGGTGGCTACAATAAGCTGATTTTT CAVPLGGFc?tGGYNKLIF TRAV20*01 TRAJ4*01 9.0 606.0 0.64 TGTGCCAGTAGTATAAATGGGGGCCGGAGGGATGGCTACACCTTC CASSINGGRRDGYTF TRBV19*01 TRBJ1-2*01 26.0 1092.0 CAVRGRRGGLTTTF_CASSINGGRRDGYTF 1 4156 M1 FLU 0.43 1250 NEG 180 3976 7 InfluenzaA M1 GILGFVFTL transitional T cells between effector and memory populations PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*02:01 B2M MHCI -1408 chip0420_263446 6.0 13.6 Chip1 T1D_1 T1D TGTGCCAGTAGTATAAATGGGGGCCGGAGGGATGGCTACACCTTC CASSINGGRRDGYTF TRBV19*01 TRBJ1-2*01 36.0 1500.0 _CASSINGGRRDGYTF 32 4239 M1 FLU 0.67 1250 M1 162 4077 7 InfluenzaA M1 GILGFVFTL transitional T cells between effector and memory populations PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*02:01 B2M MHCI -1409 chip0420_194464 11.68 8.62 Chip1 T1D_2 T1D TGTGCCAGCAGCTCGGGACTAGTCGCCCCCGGGGAGCTGTTTTTT CASSSGLVAPGELFF TRBV2*01 TRBJ2-2*01 24.0 1409.0 _CASSSGLVAPGELFF 133 2735 EBV-BLMF1 EBV 0.75 2531 NEG 188 2547 10 EBV BLMF1 GLCTLVAML effector memory T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*02:01 B2M MHCI -1410 chip0420_793011 9.87 9.62 Chip1 T1D_1 T1D TGTGCCAGTAGGGCCTTGTTGGGATCCAATCAGCCCCAGCATTTT CASRALLGSNQPQHF TRBV19*01 TRBJ1-5*01 27.0 1287.0 _CASRALLGSNQPQHF 8 4842 EBV-BRLF1 EBV 0.8 1264 EBV-BRLF1 184 4658 9 EBV BRLF1 YVLDHLIVV effector memory T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*02:01 B2M MHCI -1411 chip0420_611003 9.53 10.31 Chip1 T1D_1 T1D TGTGCCAGCAGCCCAGTTAGCGGGTCAACCTACGAGCAGTACTTC CASSPVSGSTYEQYF TRBV3-1*01 TRBJ2-7*01 28.0 1355.0 _CASSPVSGSTYEQYF 80 5707 EBV-BLMF1 EBV 0.97 2531 EBV-BLMF1 197 5510 9 EBV BLMF1 GLCTLVAML effector memory T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*02:01 B2M MHCI -1412 chip0420_292651 12.72 6.8 Chip1 T1D_2 T1D TGCGCCAGCAGGATGGGGGCCGGGGATACGCAGTATTTT CASRMGAGDTQYF TRBV10-2*01 TRBJ2-3*01 14.0 815.0 _CASRMGAGDTQYF 90 2589 EBV-BLMF1 EBV 0.43 2531 NEG 206 2383 10 EBV BLMF1 GLCTLVAML effector memory T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*02:01 B2M MHCI -1413 chip0420_802503 10.52 11.27 Chip1 T1D_1 T1D TGCAGCGTCGGCTCCAGGGGAACTAATGAAAAACTGTTTTTT CSVGSRGTNEKLFF TRBV29-1*01 TRBJ1-4*01 114.0 6753.0 _CSVGSRGTNEKLFF 283 3341 EBV-BLMF1 EBV 0.89 2531 NEG 163 3178 9 EBV BLMF1 GLCTLVAML effector memory T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*02:01 B2M MHCI -1414 chip0420_564594 13.87 12.91 Chip1 T1D_2 T1D TGCAGCGTGGGGACAGGGGGAACTAATGAAAAACTGTTTTTT CSVGTGGTNEKLFF TRBV29-1*01 TRBJ1-4*01 23.0 1118.0 _CSVGTGGTNEKLFF 638 1754 EBV-BLMF1 EBV 0.6 2531 NEG 154 1600 12 EBV BLMF1 GLCTLVAML effector T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*02:01 B2M MHCI -1415 chip0420_578994 11.82 12.65 Chip1 T1D_2 T1D TGCAGCGTTGACCAAAGGACAGGGCAAAAGAAGAACTATGGCTACACCTTC CSVDQRTGQKKNYGYTF TRBV29-1*01 TRBJ1-2*01 86.0 3252.0 _CSVDQRTGQKKNYGYTF 40 1621 EBV-BLMF1 EBV 0.5 2531 NEG 157 1464 11 EBV BLMF1 GLCTLVAML effector T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*02:01 B2M MHCI -1416 chip0420_731207 11.85 8.68 Chip1 T1D_2 T1D TGCAGCGTGGGGACAGGGGGAACTAATGAAAAACTGTTTTTT CSVGTGGTNEKLFF TRBV29-1*01 TRBJ1-4*01 24.0 1177.0 _CSVGTGGTNEKLFF 638 2354 EBV-BLMF1 EBV 0.4 2531 NEG 160 2194 10 EBV BLMF1 GLCTLVAML effector memory T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*02:01 B2M MHCI -1417 chip0420_469356 15.47 11.02 Chip1 T1D_2 T1D TGCAGCGTGGGGACAGGGGGAACTAATGAAAAACTGTTTTTT CSVGTGGTNEKLFF TRBV29-1*01 TRBJ1-4*01 50.0 1690.0 _CSVGTGGTNEKLFF 638 2106 EBV-BLMF1 EBV 0.5 2531 NEG 152 1954 12 EBV BLMF1 GLCTLVAML effector T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*02:01 B2M MHCI -1418 chip0420_120197 10.78 7.03 Chip1 T1D_2 T1D TGTGCCAGCAGTTACATGTCCGGCGAAGCTTTCTTT CASSYMSGEAFF TRAV9-1*01 TRAJ40*01 2.0 15.0 TGTGCCAGCAGTTACATGTCCGGCGAAGCTTTCTTT CASSYMSGEAFF TRBV6-2*01,TRBV6-3*01 TRBJ1-1*01 58.0 4463.0 CASSYMSGEAFF_CASSYMSGEAFF 2 4532 EBV-BRLF1 EBV 0.93 1264 EBV-BRLF1 205 4327 10 EBV BRLF1 YVLDHLIVV effector memory T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*02:01 B2M MHCI -1419 chip0420_676417 12.47 6.09 Chip1 T1D_1 T1D TGTGCCAGCAGTGTGCAGGGCGGTAACTATGGCTACACCTCC CASSVQGGNYGYTS TRBV6-1*01 TRBJ1-2*01 7.0 231.0 _CASSVQGGNYGYTS 1 8311 EBV-LMP2-FLY EBV 0.89 355 NEG 174 8137 10 EBV LMP2 FLYALALLL effector memory T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*02:01 B2M MHCI -1420 chip0420_583388 14.64 10.25 Chip1 T1D_2 T1D TGTGTGGTGAACCCCTTTAGGATACAGCACCCTCACCTTT CVVNPFag??gaYSTLTF TRAV12-1*01 TRAJ11*01 1.0 51.0 CVVNPFag??gaYSTLTF_ 1 2674 EBV-BRLF1 EBV 0.89 1264 NEG 167 2507 12 EBV BRLF1 YVLDHLIVV effector T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*02:01 B2M MHCI -1421 chip0420_331362 10.46 6.94 Chip1 T1D_2 T1D TGTGCAATGAGAGAGTCTCGGGATAGCAACTATCAGTTAATCTGG CAMRESRDSNYQLIW TRAV14/DV4*01 TRAJ33*01 6.0 456.0 TGTGCCAGCAGCGTAGAGCCCTCCTTGCTGCATCAGCCCCAGCATTTT CASSVEPSLLHQPQHF TRBV9*01 TRBJ1-5*01 2.0 19.0 CAMRESRDSNYQLIW_CASSVEPSLLHQPQHF 1 3152 EBV-BLMF1 EBV 0.63 2531 NEG 179 2973 10 EBV BLMF1 GLCTLVAML effector memory T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*02:01 B2M MHCI -1422 chip0420_161225 12.85 13.61 Chip1 T1D_2 T1D TGTGCCCTTGGGGACACCGACAAGCTCATCTTT CALGDTDKLIF TRAV8-1*01 TRAJ34*01 56.0 4233.0 TGTGCCAGCAGGCCCCTACTGGGGCGCAATCAGCCCCAGCATTTT CASRPLLGRNQPQHF TRBV6-1*01 TRBJ1-5*01 44.0 1280.0 CALGDTDKLIF_CASRPLLGRNQPQHF 1 1716 EBV-BRLF1 EBV 0.73 1264 NEG 163 1553 11 EBV BRLF1 YVLDHLIVV effector T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*02:01 B2M MHCI -1423 chip0420_467885 14.21 7.62 Chip1 T1D_1 T1D TGCAGCGTCGGCTCCAGGGGAACTAATGAAAAACTGTTTTTT CSVGSRGTNEKLFF TRBV29-1*01 TRBJ1-4*01 228.0 9097.0 _CSVGSRGTNEKLFF 283 3541 EBV-BLMF1 EBV 0.83 2531 NEG 183 3358 10 EBV BLMF1 GLCTLVAML effector memory T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*02:01 B2M MHCI -1424 chip0420_195404 9.76 7.66 Chip1 T1D_1 T1D TGTGCCACCCAACAGGGGAGGGACAGTCAGCCCCAGCATTTT CATQQGRDSQPQHF TRBV28*01 TRBJ1-5*01 44.0 1441.0 _CATQQGRDSQPQHF 52 3253 EBV-BLMF1 EBV 0.83 2531 NEG 182 3071 8 EBV BLMF1 GLCTLVAML effector memory T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*02:01 B2M MHCI -1425 chip0420_753466 5.55 9.07 Chip1 T1D_1 T1D TGTGCCACTTTTCCGGGCGGCTCCTACGAGCAGTACTTC CATFPGGSYEQYF TRBV28*01 TRBJ2-7*01 67.0 3328.0 _CATFPGGSYEQYF 1 4264 EBV-LMP1-1 EBV 1.0 237 EBV-LMP1-1 149 4115 6 EBV LMP1 YLLEMLWRL central memory T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*02:01 B2M MHCI -1426 chip0420_424463 9.39 8.95 Chip1 T1D_1 T1D TGCAGCATCGGCTCCAGGGGAACTAATGAAAAACTGTTTTTT CSIGSRGTNEKLFF TRBV29-1*01 TRBJ1-4*01 31.0 1534.0 _CSIGSRGTNEKLFF 2 3264 EBV-BLMF1 EBV 0.58 2531 NEG 147 3117 8 EBV BLMF1 GLCTLVAML effector memory T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*02:01 B2M MHCI -1427 chip0420_168823 14.4 9.19 Chip1 T1D_2 T1D TGCAGCGTGGGGACAGGGGGAACTAATGAAAAACTGTTTTTT CSVGTGGTNEKLFF TRBV29-1*01 TRBJ1-4*01 75.0 3620.0 _CSVGTGGTNEKLFF 638 3498 EBV-BLMF1 EBV 0.55 2531 NEG 202 3296 12 EBV BLMF1 GLCTLVAML effector T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*02:01 B2M MHCI -1428 chip0420_115384 8.34 8.56 Chip1 T1D_1 T1D _ 6746 10534 EBV-BRLF1 EBV 0.54 1264 EBV-BRLF1 170 10364 8 EBV BRLF1 YVLDHLIVV effector memory T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*02:01 B2M MHCI -1429 chip0420_804754 12.17 7.03 Chip1 T1D_2 T1D TGCAGCGTTGACCAAAGGACAGGGCAAAAGAAGAACTATGGCTACACCTTC CSVDQRTGQKKNYGYTF TRBV29-1*01 TRBJ1-2*01 72.0 3249.0 _CSVDQRTGQKKNYGYTF 40 3218 EBV-BLMF1 EBV 0.8 2531 NEG 194 3024 10 EBV BLMF1 GLCTLVAML effector memory T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*02:01 B2M MHCI -1430 chip0420_785976 13.63 8.32 Chip1 T1D_1 T1D TATGCCAGCAGCACGGGACAGCTATCGAACACCGGGGAGCTGTTTTTT YASSTGQLSNTGELFF TRBV9*01 TRBJ2-2*01 6.0 256.0 _YASSTGQLSNTGELFF 2 3287 EBV-BLMF1 EBV 0.45 2531 NEG 172 3115 10 EBV BLMF1 GLCTLVAML effector memory T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*02:01 B2M MHCI -1431 chip0420_770526 5.55 13.2 Chip1 T1D_1 T1D _ 6746 7743 M1 FLU 0.62 1250 M1 160 7583 7 InfluenzaA M1 GILGFVFTL transitional T cells between effector and memory populations PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*02:01 B2M MHCI -1432 chip0420_454975 8.58 8.67 Chip1 T1D_1 T1D TGCAGCGTCGGCTCCAGGGGAACTAATGAAAAACTGTTTTTT CSVGSRGTNEKLFF TRBV29-1*01 TRBJ1-4*01 80.0 4215.0 _CSVGSRGTNEKLFF 283 5656 EBV-BLMF1 EBV 0.73 2531 NEG 181 5475 8 EBV BLMF1 GLCTLVAML effector memory T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*02:01 B2M MHCI -1433 chip0420_239958 9.64 9.63 Chip1 T1D_2 T1D TGTGCCAGCAGTTACATGTCCGGCGAAGCTTTCTTT CASSYMSGEAFF TRBV6-2*01,TRBV6-3*01 TRBJ1-1*01 4.0 84.0 _CASSYMSGEAFF 8 3506 EBV-BRLF1 EBV 0.94 1264 EBV-BRLF1 176 3330 8 EBV BRLF1 YVLDHLIVV effector memory T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*02:01 B2M MHCI -1434 chip0420_127113 8.72 8.7 Chip1 T1D_1 T1D _ 6746 4622 EBV-BRLF1 EBV 0.94 1264 EBV-BRLF1 176 4446 8 EBV BRLF1 YVLDHLIVV effector memory T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*02:01 B2M MHCI -1435 chip0420_770210 7.74 14.17 Chip1 T1D_1 T1D TGCGCCAGCCGCTTGGGTGGGATTGCCATCAGCCCCAGCATTTT CASRLGGa?tCHQPQHF TRBV5-1*01 TRBJ1-5*01 37.0 2025.0 _CASRLGGa?tCHQPQHF 1 1969 M1 FLU 0.96 1250 M1 156 1813 7 InfluenzaA M1 GILGFVFTL transitional T cells between effector and memory populations PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*02:01 B2M MHCI -1436 chip0420_226097 14.07 9.57 Chip1 T1D_1 T1D _ 6746 5519 EBV-BLMF1 EBV 0.67 2531 NEG 184 5335 12 EBV BLMF1 GLCTLVAML effector T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*02:01 B2M MHCI -1437 chip0420_701357 -1.25 7.41 Chip1 T1D_1 T1D TGTGCTACGGGTGAGGGCTTTATTTTT CATGEGFIF TRAV17*01 TRAJ48*01 3.0 75.0 TGTGCCAGCGCGATATACGGGGAGCTGTTTTTT CASAIYGELFF TRBV7-9*01 TRBJ2-2*01 48.0 3948.0 CATGEGFIF_CASAIYGELFF 1 6038 CVB3-P3A CVB 0.62 77 NEG 167 5871 3 CoxsackievirusB P3A GIIYIIYKL Naive T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*02:01 B2M MHCI -1438 chip0420_180430 7.91 7.73 Chip1 T1D_2 T1D TGTGTGGTGAACGGCAGGGATAGCAGCTATAAATTGATCTTC CVVNGRDSSYKLIF TRAV12-1*01 TRAJ12*01 31.0 1425.0 TGTGCCAGCAGCTCGGGACTAGTCGCCCCCGGGGAGCTGTTTTTT CASSSGLVAPGELFF TRBV2*01 TRBJ2-2*01 62.0 3531.0 CVVNGRDSSYKLIF_CASSSGLVAPGELFF 98 3641 EBV-BLMF1 EBV 0.42 2531 NEG 166 3475 8 EBV BLMF1 GLCTLVAML effector memory T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*02:01 B2M MHCI -1439 chip0420_22935 13.2 13.66 Chip1 T1D_2 T1D TGCAGCGTTGACCAAAGGACAGGGCAAAAGAAGAACTATGGCTACACCTTC CSVDQRTGQKKNYGYTF TRBV29-1*01 TRBJ1-2*01 37.0 1877.0 _CSVDQRTGQKKNYGYTF 40 1047 EBV-BLMF1 EBV 0.75 2531 NEG 184 863 11 EBV BLMF1 GLCTLVAML effector T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*02:01 B2M MHCI -1440 chip0420_857738 11.79 7.69 Chip1 T1D_2 T1D TGCGCCAGCAGGATGGGGGCCGGGGATACGCAGTATTTT CASRMGAGDTQYF TRBV10-2*01 TRBJ2-3*01 23.0 1305.0 _CASRMGAGDTQYF 90 3277 EBV-BLMF1 EBV 0.83 2531 NEG 183 3094 10 EBV BLMF1 GLCTLVAML effector memory T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*02:01 B2M MHCI -1441 chip0420_372547 11.9 13.18 Chip1 T1D_1 T1D TGTGCTCTAATGGATGGAGCCAATAGTAAGCTGACATTT CALMDGANSKLTF TRAV16*01 TRAJ56*01 2.0 119.0 TGTGCCGCCCAACAGGGGCGGGCCAGTCAGCCCCCGCATTTT CAAQQGRASQPPHF TRBV28*01 TRBJ1-5*01 3.0 181.0 CALMDGANSKLTF_CAAQQGRASQPPHF 1 1642 EBV-BLMF1 EBV 1.0 2531 NEG 167 1475 11 EBV BLMF1 GLCTLVAML effector T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*02:01 B2M MHCI -1442 chip0420_339617 12.38 8.67 Chip1 T1D_2 T1D TGTGCCAGCAGCCCCTCGACTAGCGGGAGTGGGGAGACCCAGTACTTC CASSPSTSGSGETQYF TRBV3-1*01 TRBJ2-5*01 71.0 3779.0 _CASSPSTSGSGETQYF 18 2100 EBV-BRLF1 EBV 0.91 1264 EBV-BRLF1 178 1922 10 EBV BRLF1 YVLDHLIVV effector memory T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*02:01 B2M MHCI -1443 chip0420_784892 -3.26 9.36 Chip1 T1D_1 T1D _ 6746 5761 M1 FLU 0.75 1250 NEG 167 5594 2 InfluenzaA M1 GILGFVFTL Naive T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*02:01 B2M MHCI -1444 chip0420_54864 11.11 10.39 Chip1 T1D_2 T1D TGTGCCAGCAGCTCGGGACTAGTCGCCCCCGGGGAGCTGTTTTTT CASSSGLVAPGELFF TRBV2*01 TRBJ2-2*01 28.0 1742.0 _CASSSGLVAPGELFF 133 4342 EBV-BLMF1 EBV 0.4 2531 NEG 160 4182 9 EBV BLMF1 GLCTLVAML effector memory T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*02:01 B2M MHCI -1445 chip0420_807453 13.01 7.26 Chip1 T1D_2 T1D TTTGCTTCCCTAACCCCGGGGGCTTCCAAGGTGAGCTTT FASLTPGASKVSF TRAV8-6*01 TRAJ3*01 3.0 325.0 TGTGCCAGCAGCTCGGGACTAGTCGCCCCCGGGGAGCTGTTTTTT CASSSGLVAPGELFF TRBV2*01 TRBJ2-2*01 98.0 6030.0 FASLTPGASKVSF_CASSSGLVAPGELFF 1 3081 EBV-BLMF1 EBV 0.67 2531 NEG 175 2906 10 EBV BLMF1 GLCTLVAML effector memory T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*02:01 B2M MHCI -1446 chip0420_786217 7.97 10.65 Chip1 T1D_2 T1D TGCGCCAGCAGGATGGGGGCCGGGGATACGCAGTATTTT CASRMGAGDTQYF TRBV10-2*01 TRBJ2-3*01 67.0 3732.0 _CASRMGAGDTQYF 90 3188 EBV-BLMF1 EBV 0.62 2531 NEG 163 3025 7 EBV BLMF1 GLCTLVAML transitional T cells between effector and memory populations PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*02:01 B2M MHCI -1447 chip0420_719685 6.25 12.69 Chip1 T1D_1 T1D _ 6746 4701 M1 FLU 0.93 1250 M1 167 4534 7 InfluenzaA M1 GILGFVFTL transitional T cells between effector and memory populations PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*02:01 B2M MHCI -1448 chip0420_157633 6.12 12.69 Chip1 T1D_1 T1D TGTGCCAGTAGTATAAATGGGGGCCGGAGGGATGGCTACACCTTC CASSINGGRRDGYTF TRBV19*01 TRBJ1-2*01 35.0 1509.0 _CASSINGGRRDGYTF 32 4676 M1 FLU 0.95 1250 M1 162 4514 7 InfluenzaA M1 GILGFVFTL transitional T cells between effector and memory populations PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*02:01 B2M MHCI -1449 chip0420_254131 8.69 10.33 Chip1 T1D_1 T1D _ 6746 3919 EBV-BRLF1 EBV 0.86 1264 NEG 171 3748 8 EBV BRLF1 YVLDHLIVV effector memory T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*02:01 B2M MHCI -1450 chip0420_400206 10.46 13.94 Chip1 T1D_1 T1D _ 6746 1134 M1 FLU 0.89 1250 NEG 179 955 11 InfluenzaA M1 GILGFVFTL effector T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*02:01 B2M MHCI -1451 chip0420_343351 -3.47 9.28 Chip1 T1D_1 T1D TGTGCCAGCAGTTTCCCACTAGCGGTCCAGGATGATGAGCAGTTCTTC CASSFPLAVQDDEQFF TRBV28*01 TRBJ2-1*01 23.0 1361.0 _CASSFPLAVQDDEQFF 1 5621 PGT-178 PGT 0.45 1480 PGT-178 161 5460 2 HomoSapiens PGT LLAGIGTVPI Naive T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*02:01 B2M MHCI -1452 chip0420_140106 -2.77 9.23 Chip1 T1D_1 T1D TGTGCCAGCTGCCAAGGTCGGGGGCAGGCGCCCTACAATGAGCAGTTTTTC CASCQGRGQAPYNEQFF TRBV3-1*01 TRBJ2-1*01 2.0 87.0 _CASCQGRGQAPYNEQFF 1 5566 PGT-178 PGT 0.79 1480 PGT-178 143 5423 2 HomoSapiens PGT LLAGIGTVPI Naive T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*02:01 B2M MHCI -1453 chip0420_854584 -1.43 7.7 Chip1 T1D_1 T1D TGTGCTGTGAGCCCTTCTGGGGGTTACCAGAAAGTTACCTTT CAVSPSGGYQKVTF TRAV3*01 TRAJ13*01 30.0 2068.0 CAVSPSGGYQKVTF_ 1 7215 VPR-59-67 HIV 0.71 16 NEG 160 7055 3 HIV-1 VPR AIIRILQQL Naive T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*02:01 B2M MHCI -1454 chip0420_602158 12.2 6.53 Chip1 T1D_1 T1D TGCGGCACAGAGGAACCTAACGACTACAAGCTCAGCTTT CGTEEPNDYKLSF TRAV30*01 TRAJ20*01 40.0 2120.0 TGTGCCAGCAGCACGGGACAGCTATCAAACACCGGGGAGCTGTTTTTT CASSTGQLSNTGELFF TRBV9*01 TRBJ2-2*01 50.0 2625.0 CGTEEPNDYKLSF_CASSTGQLSNTGELFF 18 3899 EBV-BLMF1 EBV 0.67 2531 NEG 163 3736 10 EBV BLMF1 GLCTLVAML effector memory T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*02:01 B2M MHCI -1455 chip0420_525431 9.19 8.29 Chip1 T1D_2 T1D _ 6746 3136 EBV-BRLF1 EBV 0.94 1264 EBV-BRLF1 191 2945 8 EBV BRLF1 YVLDHLIVV effector memory T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*02:01 B2M MHCI -1456 chip0420_78213 9.76 9.72 Chip1 T1D_1 T1D TGTGCCAGCAGTTCGGGACAGGTACTTCCCAATGAGCAGTTCTTC CASSSGQVLPNEQFF TRBV2*01 TRBJ2-1*01 43.0 2372.0 _CASSSGQVLPNEQFF 61 4051 EBV-BLMF1 EBV 0.45 2531 NEG 159 3892 8 EBV BLMF1 GLCTLVAML effector memory T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*02:01 B2M MHCI -1457 chip0420_327415 7.45 10.08 Chip1 T1D_2 T1D TGCAGCGTTGGAGGCACATTCTATGGCTACACCTTC CSVGGTFYGYTF TRBV29-1*01 TRBJ1-2*01 65.0 5511.0 _CSVGGTFYGYTF 12 5928 EBV-BLMF1 EBV 0.67 2531 NEG 173 5755 7 EBV BLMF1 GLCTLVAML transitional T cells between effector and memory populations PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*02:01 B2M MHCI -1458 chip0420_840864 9.1 9.15 Chip1 T1D_1 T1D _ 6746 5601 EBV-BRLF1 EBV 0.92 1264 EBV-BRLF1 186 5415 8 EBV BRLF1 YVLDHLIVV effector memory T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*02:01 B2M MHCI -1459 chip0420_247073 14.64 8.72 Chip1 T1D_1 T1D TGTGCCAGCAGCCAAAGCCCGGGTGGTACGCAGTATTTT CASSQSPGGTQYF TRBV14*01 TRBJ2-3*01 7.0 246.0 _CASSQSPGGTQYF 94 1693 EBV-BLMF1 EBV 0.5 2531 NEG 153 1540 12 EBV BLMF1 GLCTLVAML effector T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*02:01 B2M MHCI -1460 chip0420_196980 -1.97 8.33 Chip1 T1D_1 T1D _ 6746 4908 ADH-79-88 ADH 0.63 15 NEG 148 4760 4 HomoSapiens ADH RQFGPDWIVA Naive T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*02:01 B2M MHCI -1461 chip0420_851107 9.34 7.96 Chip1 T1D_1 T1D TGTGCCAGCAGTTCGGGACAGGTACTTCCCAATGAGCAGTTCTTC CASSSGQVLPNEQFF TRBV2*01 TRBJ2-1*01 25.0 1285.0 _CASSSGQVLPNEQFF 61 5112 EBV-BLMF1 EBV 0.46 2531 NEG 164 4948 8 EBV BLMF1 GLCTLVAML effector memory T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*02:01 B2M MHCI -1462 chip0420_816453 -0.43 7.13 Chip1 T1D_1 T1D TGTGCTACGAATAATGCAGGCAACATGCTCACCTTT CATNNAGNMLTF TRAV17*01 TRAJ39*01 3.0 509.0 TGTGCCAGCAGCAAATGGGGGGATGAAAAACTGTTTTTT CASSKWGDEKLFF TRBV13*01 TRBJ1-4*01 27.0 1205.0 CATNNAGNMLTF_CASSKWGDEKLFF 1 9296 POL-132-140 HIV 0.62 37 NEG 166 9130 3 HIV-1 POL LVGPTPVNI Naive T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*02:01 B2M MHCI -1463 chip0420_814665 13.23 13.06 Chip1 T1D_2 T1D TGTGCCAGCACCGACACCCTCAGCCTCATTAACACCGGGGAGCTGTTTTTT CASTDTLSLINTGELFF TRBV28*01 TRBJ2-2*01 123.0 5057.0 _CASTDTLSLINTGELFF 2 1615 EBV-BRLF1 EBV 1.0 1264 EBV-BRLF1 180 1435 10 EBV BRLF1 YVLDHLIVV effector memory T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*02:01 B2M MHCI -1464 chip0420_409070 12.11 7.24 Chip1 T1D_2 T1D TGCAGCGTTGGGGGCAGCTTCTATGGCTACACCTTC CSVGGSFYGYTF TRBV29-1*01 TRBJ1-2*01 1.0 34.0 _CSVGGSFYGYTF 42 2671 EBV-BLMF1 EBV 0.82 2531 NEG 176 2495 10 EBV BLMF1 GLCTLVAML effector memory T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*02:01 B2M MHCI -1465 chip0420_426064 11.81 11.96 Chip1 T1D_2 T1D TGTGCCAGCAGCCCCTCGACTAGCGGGAGTGGGGAGACCCAGTACTTC CASSPSTSGSGETQYF TRBV3-1*01 TRBJ2-5*01 1.0 32.0 _CASSPSTSGSGETQYF 18 2468 EBV-BRLF1 EBV 1.0 1264 EBV-BRLF1 177 2291 11 EBV BRLF1 YVLDHLIVV effector T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*02:01 B2M MHCI -1466 chip0420_399077 13.2 7.04 Chip1 T1D_1 T1D TGCAGCGTCGGCTCCAGGGGAACTAATGAAAAACTGTTTTTT CSVGSRGTNEKLFF TRBV29-1*01 TRBJ1-4*01 113.0 7331.0 _CSVGSRGTNEKLFF 283 2364 EBV-BLMF1 EBV 0.5 2531 NEG 178 2186 10 EBV BLMF1 GLCTLVAML effector memory T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*02:01 B2M MHCI -1467 chip0420_823294 11.26 10.27 Chip1 T1D_1 T1D TGCAGCGTCGGCTCCAGGGGAACTAATGAAAAACTGTTTTTT CSVGSRGTNEKLFF TRBV29-1*01 TRBJ1-4*01 16.0 796.0 _CSVGSRGTNEKLFF 283 3571 EBV-BLMF1 EBV 0.54 2531 NEG 165 3406 9 EBV BLMF1 GLCTLVAML effector memory T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*02:01 B2M MHCI -1468 chip0420_525997 15.4 10.25 Chip1 T1D_1 T1D TGCGGCCCAGAGGAACCTAACGACTACAAGCTCAGCTTT CGPEEPNDYKLSF TRAV30*01 TRAJ20*01 29.0 1813.0 TGTGCCAGCAGCACGGGACAGCTATCGAACACCGGGGAGCTGTTTTTT CASSTGQLSNTGELFF TRBV9*01 TRBJ2-2*01 59.0 2565.0 CGPEEPNDYKLSF_CASSTGQLSNTGELFF 14 3077 EBV-BLMF1 EBV 0.83 2531 NEG 169 2908 12 EBV BLMF1 GLCTLVAML effector T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*02:01 B2M MHCI -1469 chip0420_621251 15.19 12.89 Chip1 T1D_2 T1D TGTGCTGTGAGTGAACCCTAAATAACAATGCCAGACTCATGTTT CAVSEP*a?tNNARLMF TRAV8-6*01 TRAJ31*01 1.0 102.0 TGTGCCTGGTGTGTACAGCTAGCGGGAGTAGACGAGCAGTACTTC CAWCVQLAGVDEQYF TRBV30*01 TRBJ2-7*01 50.0 1981.0 CAVSEP*a?tNNARLMF_CAWCVQLAGVDEQYF 1 1621 EBV-BRLF1 EBV 1.0 1264 NEG 154 1467 12 EBV BRLF1 YVLDHLIVV effector T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*02:01 B2M MHCI -1470 chip0420_542361 5.86 12.1 Chip1 T1D_1 T1D TGTGCAATGAGCGCGGATGGAGGAAGCCAAGGAAATCTCATCTTT CAMSADGGSQGNLIF TRAV12-3*01 TRAJ42*01 1.0 30.0 CAMSADGGSQGNLIF_ 1 6758 M1 FLU 0.45 1250 M1 155 6603 7 InfluenzaA M1 GILGFVFTL transitional T cells between effector and memory populations PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*02:01 B2M MHCI -1471 chip0420_293964 10.9 7.88 Chip1 T1D_1 T1D _ 6746 4743 EBV-BLMF1 EBV 0.71 2531 NEG 174 4569 10 EBV BLMF1 GLCTLVAML effector memory T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*02:01 B2M MHCI -1472 chip0420_288285 5.7 8.99 Chip1 T1D_2 T1D TGTGCCAGCAGTTTATACTACAATGAGCAGTTCTTC CASSLYYNEQFF TRBV12-3*01,TRBV12-4*01 TRBJ2-1*01 46.0 3362.0 _CASSLYYNEQFF 4 8750 EBV-LMP1-1 EBV 0.88 237 EBV-LMP1-1 172 8578 6 EBV LMP1 YLLEMLWRL central memory T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*02:01 B2M MHCI -1473 chip0420_426119 9.44 9.56 Chip1 T1D_2 T1D TGTGTGGTGAACGGCAGGGATAGCAGCTATACATTGCTCTTC CVVNGRDSSYTLLF TRAV12-1*01 TRAJ12*01 50.0 2130.0 TGTGCCAGCAGCTCGGGACTAGTCGCCCCCGGGGAGCTGTTTTTT CASSSGLVAPGELFF TRBV2*01 TRBJ2-2*01 13.0 555.0 CVVNGRDSSYTLLF_CASSSGLVAPGELFF 1 3928 EBV-BLMF1 EBV 0.75 2531 NEG 180 3748 8 EBV BLMF1 GLCTLVAML effector memory T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*02:01 B2M MHCI -1474 chip0420_10335 6.03 13.16 Chip1 T1D_1 T1D TGTGCTGTGAGTGATCGGGATGGCGGCTTCAAAACTATCTTT CAVSDRDGGFKTIF TRAV8-4*01 TRAJ9*01 79.0 4101.0 TGTGCCAGTAGTATAAATGGGGGCCGGAGGGATGGCTACACCTTC CASSINGGRRDGYTF TRBV19*01 TRBJ1-2*01 24.0 1057.0 CAVSDRDGGFKTIF_CASSINGGRRDGYTF 5 3676 M1 FLU 0.77 1250 M1 155 3521 7 InfluenzaA M1 GILGFVFTL transitional T cells between effector and memory populations PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*02:01 B2M MHCI -1475 chip0420_450991 7.98 8.27 Chip1 tet_neg TGCGCCAGCAGTGAGTCTTTCCAGGCGAACACTGAAGCCTTCTTT CASSESFQANTEAFF TRBV10-2*01 TRBJ1-1*01 10.0 368.0 _CASSESFQANTEAFF 1 15847 PGT-178 PGT 0.58 1480 PGT-178 164 15683 8 HomoSapiens PGT LLAGIGTVPI effector memory T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*02:01 B2M MHCI -1476 chip0420_78423 11.8 12.02 Chip1 T1D_2 T1D TGTGCCGTTAAGGAGACAGGCAAACTAATCTTT CAVKETGKLIF TRAV8-1*01 TRAJ37*01 32.0 2277.0 TGTGCCAGCACCAGTGGATCGGGCTTTGAGCAGTACTTC CASTSGSGFEQYF TRBV7-9*01 TRBJ2-7*01 15.0 1235.0 CAVKETGKLIF_CASTSGSGFEQYF 3 2232 EBV-BRLF1 EBV 0.96 1264 EBV-BRLF1 154 2078 11 EBV BRLF1 YVLDHLIVV effector T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*02:01 B2M MHCI -1477 chip0420_9395 13.96 10.9 Chip1 T1D_1 T1D TGCGGCCCAGAGGAACCTAACGACTACAAGCTCAGCTTT CGPEEPNDYKLSF TRAV30*01 TRAJ20*01 35.0 2149.0 CGPEEPNDYKLSF_ 13 2785 EBV-BLMF1 EBV 0.6 2531 NEG 166 2619 12 EBV BLMF1 GLCTLVAML effector T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*02:01 B2M MHCI -1478 chip0420_819174 10.22 9.73 Chip1 T1D_2 T1D TGTGCTTCCCTAACCCCGGGGGCTTCCAAGATAATCTTT CASLTPGASKIIF TRAV8-6*01 TRAJ3*01 45.0 4344.0 TGTGCCAGCAGCTCGGGACTAGTCGCCCCCGGGGAGCTGTTTTTT CASSSGLVAPGELFF TRBV2*01 TRBJ2-2*01 22.0 1594.0 CASLTPGASKIIF_CASSSGLVAPGELFF 38 4857 EBV-BLMF1 EBV 0.67 2531 NEG 169 4688 9 EBV BLMF1 GLCTLVAML effector memory T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*02:01 B2M MHCI -1479 chip0420_734057 11.74 9.43 Chip1 T1D_2 T1D TGTGCAGCGTATGCAGGCAACATGCTCACCTTT CAAYAGNMLTF TRAV29/DV5*01 TRAJ39*01 25.0 2115.0 TGCGCCAGCAGAGCGGGAGCCGGGGATACGCAGTATTTT CASRAGAGDTQYF TRBV10-2*01 TRBJ2-3*01 12.0 372.0 CAAYAGNMLTF_CASRAGAGDTQYF 18 3058 EBV-BLMF1 EBV 0.47 2531 NEG 202 2856 10 EBV BLMF1 GLCTLVAML effector memory T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*02:01 B2M MHCI -1480 chip0420_640370 10.05 11.25 Chip1 T1D_2 T1D TGCAGCGTGGGGACAGGGGGAACTAATGAAAAACTGTTTTTT CSVGTGGTNEKLFF TRBV29-1*01 TRBJ1-4*01 37.0 1969.0 _CSVGTGGTNEKLFF 638 3649 EBV-BLMF1 EBV 0.5 2531 NEG 170 3479 9 EBV BLMF1 GLCTLVAML effector memory T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*02:01 B2M MHCI -1481 chip0420_545133 15.81 10.44 Chip1 T1D_1 T1D TGCGGCACAGAGGAACCTAACGACTACAAGCTCAGCTTT CGTEEPNDYKLSF TRAV30*01 TRAJ20*01 27.0 1725.0 CGTEEPNDYKLSF_ 22 2065 EBV-BLMF1 EBV 0.8 2531 NEG 148 1917 12 EBV BLMF1 GLCTLVAML effector T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*02:01 B2M MHCI -1482 chip0420_514574 16.26 11.05 Chip1 T1D_1 T1D TGCGGCCCAGAGGAACCTAACGACTACAAGCTCAGCTTT CGPEEPNDYKLSF TRAV30*01 TRAJ20*01 21.0 1748.0 CGPEEPNDYKLSF_ 13 1850 EBV-BLMF1 EBV 0.5 2531 NEG 170 1680 12 EBV BLMF1 GLCTLVAML effector T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*02:01 B2M MHCI -1483 chip0420_459185 13.55 7.66 Chip1 T1D_2 T1D TGTGTGGTGAACGGCAGGGATAGCAGCTATAAATTGATCTTC CVVNGRDSSYKLIF TRAV12-1*01 TRAJ12*01 4.0 287.0 TGTGCCAGCAGCTCGGGACTAGTCGCCCCCGGGGAGCTGTTTTTT CASSSGLVAPGELFF TRBV2*01 TRBJ2-2*01 30.0 2430.0 CVVNGRDSSYKLIF_CASSSGLVAPGELFF 98 2730 EBV-BLMF1 EBV 0.78 2531 NEG 182 2548 10 EBV BLMF1 GLCTLVAML effector memory T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*02:01 B2M MHCI -1484 chip0420_227467 10.22 10.57 Chip1 T1D_1 T1D TGCAGCGTCGGCTCCAGGGGAACTAATGAAAAACCGTTTTTT CSVGSRGTNEKPFF TRBV29-1*01 TRBJ1-4*01 79.0 4405.0 _CSVGSRGTNEKPFF 1 4610 EBV-BLMF1 EBV 0.6 2531 NEG 193 4417 9 EBV BLMF1 GLCTLVAML effector memory T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*02:01 B2M MHCI -1485 chip0420_63602 6.04 11.99 Chip1 T1D_1 T1D TGTGCTTTCATGAAGGGTGCTGGTGGTACTAGCTATGGCACGCTGACATTT CAFMKGAGGTSYGTLTF TRAV38-1*01 TRAJ52*01 38.0 1135.0 TGTGCCAGTAGTTTCGGGAGCTATGGCTACACCTTC CASSFGSYGYTF TRBV19*01 TRBJ1-2*01 35.0 3068.0 CAFMKGAGGTSYGTLTF_CASSFGSYGYTF 1 5572 M1 FLU 0.51 1250 M1 155 5417 7 InfluenzaA M1 GILGFVFTL transitional T cells between effector and memory populations PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*02:01 B2M MHCI -1486 chip0420_868992 11.73 8.1 Chip1 T1D_2 T1D TGTGCCAGCAGTGAAGGCTTTAATACCTACGAGCAGTACTTC CASSEGFNTYEQYF TRBV6-1*01 TRBJ2-7*01 58.0 2466.0 _CASSEGFNTYEQYF 4 4443 EBV-BRLF1 EBV 0.93 1264 EBV-BRLF1 172 4271 10 EBV BRLF1 YVLDHLIVV effector memory T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*02:01 B2M MHCI -1487 chip0420_252180 -3.54 11.09 Chip1 T1D_2 T1D TGTGCCATCAGTGCTTCGGGAAACTATGGCTACACCTTC CAISASGNYGYTF TRBV10-3*01 TRBJ1-2*01 17.0 585.0 _CAISASGNYGYTF 1 3243 PGT-178 PGT 0.93 1480 PGT-178 158 3085 1 HomoSapiens PGT LLAGIGTVPI Naive T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*02:01 B2M MHCI -1488 chip0420_708018 12.11 12.64 Chip1 T1D_2 T1D TGTGCCAGCACCGACACCCTCAGCCTCATTAACACCGGGGAGCTGTTTTTT CASTDTLSLINTGELFF TRBV28*01 TRBJ2-2*01 45.0 2130.0 _CASTDTLSLINTGELFF 2 1580 EBV-BRLF1 EBV 1.0 1264 EBV-BRLF1 168 1412 11 EBV BRLF1 YVLDHLIVV effector T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*02:01 B2M MHCI -1489 chip0420_118572 11.39 7.7 Chip1 T1D_1 T1D TGTGCCAGCAGTTCGGGACAGGTACTTCCCAATGAGCAGTTCTTC CASSSGQVLPNEQFF TRBV2*01 TRBJ2-1*01 86.0 6132.0 _CASSSGQVLPNEQFF 61 5049 EBV-BLMF1 EBV 0.6 2531 NEG 197 4852 10 EBV BLMF1 GLCTLVAML effector memory T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*02:01 B2M MHCI -1490 chip0420_790604 15.41 12.3 Chip1 T1D_2 T1D TGTGCAGAGAGTACTTCGGGAGGAAAGCTTATCTTC CAESTSGGKLIF TRAV5*01 TRAJ23*01 26.0 2043.0 TGCAGCGTGGGGACAGGGGGAACTAATGAAAAACTGTTTTTT CSVGTGGTNEKLFF TRBV29-1*01 TRBJ1-4*01 37.0 1868.0 CAESTSGGKLIF_CSVGTGGTNEKLFF 107 1905 EBV-BLMF1 EBV 0.62 2531 NEG 164 1741 12 EBV BLMF1 GLCTLVAML effector T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*02:01 B2M MHCI -1491 chip0420_773571 -3.13 9.31 Chip1 T1D_2 T1D TGTGCAGCAAGCCTAAACCTCGCAACACAGGCCTTCTCGTTTTT CAASLNLg?cNTGLLVF TRAV25*01 TRAJ37*01 4.0 135.0 TGTGCCAGCAGTGAATCCAGGGCAGAAGCTAACTATGGCTACACCTTC CASSESRAEANYGYTF TRBV25-1*01 TRBJ1-2*01 62.0 1746.0 CAASLNLg?cNTGLLVF_CASSESRAEANYGYTF 1 5224 PGT-178 PGT 0.95 1480 PGT-178 170 5054 2 HomoSapiens PGT LLAGIGTVPI Naive T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*02:01 B2M MHCI -1492 chip0420_850756 16.48 10.55 Chip1 healthy_1 healthy _ 6746 3425 M1 FLU 0.77 1250 M1 140 3285 12 InfluenzaA M1 GILGFVFTL effector T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*02:01 B2M MHCI -1493 chip0420_696771 11.43 7.76 Chip1 T1D_2 T1D TGTGCAGCATACGCAGGCAACATGCTCACCTTT CAAYAGNMLTF TRAV29/DV5*01 TRAJ39*01 5.0 522.0 CAAYAGNMLTF_ 8 3091 EBV-BLMF1 EBV 0.78 2531 NEG 191 2900 10 EBV BLMF1 GLCTLVAML effector memory T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*02:01 B2M MHCI -1494 chip0420_153643 11.9 12.1 Chip1 T1D_1 T1D TGTGCCAGCAGCCAGGGATTGGCCAACGTCCTGACTTTC CASSQGLANVLTF TRBV3-1*01 TRBJ2-6*01 35.0 2484.0 _CASSQGLANVLTF 3 2417 EBV-BRLF1 EBV 0.79 1264 EBV-BRLF1 171 2246 11 EBV BRLF1 YVLDHLIVV effector T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*02:01 B2M MHCI -1495 chip0420_675645 -2.77 9.74 Chip1 T1D_1 T1D TGTGCCAGCAGCTTAGGGTCCCCTTCTAGCGGGAGTTCCTACAATGAGCAGTTCTTC CASSLGSPSSGSSYNEQFF TRBV13*01 TRBJ2-1*01 28.0 1759.0 _CASSLGSPSSGSSYNEQFF 1 4677 PGT-178 PGT 0.6 1480 PGT-178 163 4514 2 HomoSapiens PGT LLAGIGTVPI Naive T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*02:01 B2M MHCI -1496 chip0420_560257 11.32 8.34 Chip1 T1D_2 T1D TGTGCCAGCAGTCCGGACCAAACTAGCTCCTACAATGAGCAGTTCTTC CASSPDQTSSYNEQFF TRBV27*01 TRBJ2-1*01 4.0 239.0 _CASSPDQTSSYNEQFF 47 3265 EBV-BRLF1 EBV 0.8 1264 EBV-BRLF1 189 3076 10 EBV BRLF1 YVLDHLIVV effector memory T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*02:01 B2M MHCI -1497 chip0420_638311 16.33 11.2 Chip1 T1D_2 T1D TGCAGCGTGGGGACAGGGGGAACTAATGAAAAACTGTTTTTT CSVGTGGTNEKLFF TRBV29-1*01 TRBJ1-4*01 45.0 2144.0 _CSVGTGGTNEKLFF 638 2255 EBV-BLMF1 EBV 0.67 2531 NEG 181 2074 12 EBV BLMF1 GLCTLVAML effector T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*02:01 B2M MHCI -1498 chip0420_303882 9.95 10.55 Chip1 T1D_1 T1D TGCAGCGTCGGCTCCAGGGGAACTAATGAAAAACTGTTTTTT CSVGSRGTNEKLFF TRBV29-1*01 TRBJ1-4*01 91.0 5450.0 _CSVGSRGTNEKLFF 283 3978 EBV-BLMF1 EBV 0.83 2531 NEG 144 3834 9 EBV BLMF1 GLCTLVAML effector memory T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*02:01 B2M MHCI -1499 chip0420_778129 12.13 8.97 Chip1 T1D_2 T1D TGTGCCAGCAGTGAAGTATTCCTGGATGAGCAGTTCTTC CASSEVFLDEQFF TRBV6-1*01 TRBJ2-1*01 17.0 1007.0 _CASSEVFLDEQFF 1 2707 EBV-BRLF1 EBV 0.8 1264 EBV-BRLF1 203 2504 10 EBV BRLF1 YVLDHLIVV effector memory T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*02:01 B2M MHCI -1500 chip0420_562014 15.47 10.79 Chip1 T1D_2 T1D TGCGCCAGCAGTCAATCGAGAGGGTCGCTCTGGGATACGCAGTATTTT CASSQSRGSLWDTQYF TRBV4-3*01 TRBJ2-3*01 48.0 2121.0 _CASSQSRGSLWDTQYF 21 2539 EBV-BRLF1 EBV 0.9 1264 EBV-BRLF1 171 2368 12 EBV BRLF1 YVLDHLIVV effector T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*02:01 B2M MHCI -1501 chip0420_479926 4.96 10.93 Chip1 T1D_2 T1D TGTGCCGTGAACGGTGGAAACAAACTGGTCTTT CAVNGGNKLVF TRAV12-2*01 TRAJ47*01 22.0 2100.0 CAVNGGNKLVF_ 5 6279 MART1-ALA MART1 0.73 269 NEG 163 6116 6 HomoSapiens MART1 ALAGIGILTV central memory T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*02:01 B2M MHCI -1502 chip0420_176976 -1.8 8.45 Chip1 T1D_2 T1D TGCAGCGTGGGCGGGGAGCTGTTTTTT CSVGGELFF TRBV29-1*01 TRBJ2-2*01 69.0 7495.0 _CSVGGELFF 1 6063 PGT-178 PGT 0.57 1480 PGT-178 160 5903 3 HomoSapiens PGT LLAGIGTVPI Naive T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*02:01 B2M MHCI -1503 chip0420_697709 9.97 9.59 Chip1 T1D_1 T1D _ 6746 5308 EBV-BLMF1 EBV 0.82 2531 NEG 167 5141 9 EBV BLMF1 GLCTLVAML effector memory T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*02:01 B2M MHCI -1504 chip0420_843276 13.57 7.81 Chip1 T1D_2 T1D TGTGCAGAGAGTACTTCGGGAGGAAAGCTTATCTTC CAESTSGGKLIF TRAV5*01 TRAJ23*01 31.0 2106.0 TGCAGCGTGGGGACAGGGGGAACTAATGAAAAACTGTTTTTT CSVGTGGTNEKLFF TRBV29-1*01 TRBJ1-4*01 62.0 2904.0 CAESTSGGKLIF_CSVGTGGTNEKLFF 107 3246 EBV-BLMF1 EBV 0.44 2531 NEG 167 3079 10 EBV BLMF1 GLCTLVAML effector memory T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*02:01 B2M MHCI -1505 chip0420_502578 6.59 11.61 Chip1 T1D_1 T1D TGTGCCAGCAGTTTTCTTGCGGGAGTTAATGAGCAGTTCTTC CASSFLAGVNEQFF TRBV28*01 TRBJ2-1*01 28.0 1170.0 _CASSFLAGVNEQFF 1 5270 PGT-178 PGT 0.62 1480 PGT-178 155 5115 7 HomoSapiens PGT LLAGIGTVPI transitional T cells between effector and memory populations PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*02:01 B2M MHCI -1506 chip0420_165269 12.3 13.11 Chip1 T1D_2 T1D TGCGCCAGCACTCATCGGGCCTCCGAGCAGTACTTC CASTHRASEQYF TRBV10-1*01 TRBJ2-7*01 5.0 207.0 _CASTHRASEQYF 1 1865 EBV-BRLF1 EBV 0.88 1264 NEG 182 1683 11 EBV BRLF1 YVLDHLIVV effector T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*02:01 B2M MHCI -1507 chip0420_353314 12.66 7.45 Chip1 T1D_2 T1D TGCAGCGTGGGGACAGGGGGAACTAATGAAAAACTGTTTTTT CSVGTGGTNEKLFF TRBV29-1*01 TRBJ1-4*01 104.0 4443.0 _CSVGTGGTNEKLFF 638 2610 EBV-BLMF1 EBV 0.57 2531 NEG 193 2417 10 EBV BLMF1 GLCTLVAML effector memory T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*02:01 B2M MHCI -1508 chip0420_424334 15.18 12.13 Chip1 T1D_1 T1D TGCGGCACAGCGGAACCTAACGACTACAAGCTCAGCTTT CGTAEPNDYKLSF TRAV30*01 TRAJ20*01 27.0 2016.0 TGTGCCAGCAGCACGGGACAGCTATCGAACACCGGGGAGCTGTTTTTT CASSTGQLSNTGELFF TRBV9*01 TRBJ2-2*01 15.0 810.0 CGTAEPNDYKLSF_CASSTGQLSNTGELFF 2 1801 EBV-BLMF1 EBV 0.8 2531 NEG 171 1630 12 EBV BLMF1 GLCTLVAML effector T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*02:01 B2M MHCI -1509 chip0420_320364 15.49 9.42 Chip1 T1D_2 T1D _ 6746 2381 EBV-BRLF1 EBV 0.92 1264 EBV-BRLF1 164 2217 12 EBV BRLF1 YVLDHLIVV effector T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*02:01 B2M MHCI -1510 chip0420_247492 11.76 10.78 Chip1 T1D_1 T1D TGTGCCAGCAGTCTTTTTTCGAGTGAGCAGTTCTTC CASSLFSSEQFF TRBV28*01 TRBJ2-1*01 21.0 1438.0 _CASSLFSSEQFF 4 3021 EBV-BRLF1 EBV 0.85 1264 EBV-BRLF1 168 2853 9 EBV BRLF1 YVLDHLIVV effector memory T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*02:01 B2M MHCI -1511 chip0420_155594 9.89 9.72 Chip1 T1D_1 T1D TGCAGCGTCGGCTCCAGGGGAACTAATGAAAAACTGTTTTTT CSVGSRGTNEKLFF TRBV29-1*01 TRBJ1-4*01 134.0 6984.0 _CSVGSRGTNEKLFF 283 4638 EBV-BLMF1 EBV 0.75 2531 NEG 174 4464 9 EBV BLMF1 GLCTLVAML effector memory T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*02:01 B2M MHCI -1512 chip0420_75072 12.45 13.47 Chip1 T1D_2 T1D _ 6746 1855 EBV-BRLF1 EBV 1.0 1264 EBV-BRLF1 162 1693 11 EBV BRLF1 YVLDHLIVV effector T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*02:01 B2M MHCI -1513 chip0420_606419 12.93 6.83 Chip1 T1D_2 T1D TGCGCCAGCAGGATGGGGGCCGGGGATACGCAGTATTTT CASRMGAGDTQYF TRBV10-2*01 TRBJ2-3*01 33.0 2251.0 _CASRMGAGDTQYF 90 2685 EBV-BLMF1 EBV 0.57 2531 NEG 201 2484 10 EBV BLMF1 GLCTLVAML effector memory T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*02:01 B2M MHCI -1514 chip0420_533016 11.78 10.67 Chip1 T1D_1 T1D TGTGCCAGCAACCCAGTTAGCGGGTCAACCTACGAGCAGTACTTC CASNPVSGSTYEQYF TRBV3-1*01 TRBJ2-7*01 26.0 1985.0 _CASNPVSGSTYEQYF 1 4058 EBV-BLMF1 EBV 0.95 2531 EBV-BLMF1 188 3870 9 EBV BLMF1 GLCTLVAML effector memory T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*02:01 B2M MHCI -1515 chip0420_510318 -1.92 7.86 Chip1 T1D_2 T1D TGTGCCGTGATGGATAACGCCTCAGGAACCTACAAATACATCTTT CAVMDNASGTYKYIF TRAV12-2*01 TRAJ40*01 11.0 639.0 TGCAGCGTTTGGTCTAGCGGAACCTACGAGCAGTACTTC CSVWSSGTYEQYF TRBV29-1*01 TRBJ2-7*01 209.0 16855.0 CAVMDNASGTYKYIF_CSVWSSGTYEQYF 1 6189 PREINS-6-14 INS 0.65 20 PREINS-6-14 160 6029 3 HomoSapiens PREINS RLLPLLALL Naive T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*02:01 B2M MHCI -1516 chip0420_193256 16.42 11.45 Chip1 T1D_1 T1D TGTGCCAGCAGCACGGAACAGCTATCGAACACCGGGGAGCTGTTTTTT CASSTEQLSNTGELFF TRBV9*01 TRBJ2-2*01 3.0 71.0 _CASSTEQLSNTGELFF 1 1712 EBV-BLMF1 EBV 0.62 2531 NEG 150 1562 12 EBV BLMF1 GLCTLVAML effector T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*02:01 B2M MHCI -1517 chip0420_71762 9.94 10.19 Chip1 T1D_2 T1D TGTGCAGCGTATGCAGGCAACATGCTCACCTTT CAAYAGNMLTF TRAV29/DV5*01 TRAJ39*01 7.0 648.0 TGCGCCAGCAGAGCGGGAGCCGGGGATACGCAGTATTTT CASRAGAGDTQYF TRBV10-2*01 TRBJ2-3*01 21.0 1263.0 CAAYAGNMLTF_CASRAGAGDTQYF 18 3754 EBV-BLMF1 EBV 1.0 2531 NEG 155 3599 9 EBV BLMF1 GLCTLVAML effector memory T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*02:01 B2M MHCI -1518 chip0420_859114 15.0 8.77 Chip1 T1D_2 T1D TGTGCAGAGAGTACTTCGGGAGGAAAGCTTATCTTC CAESTSGGKLIF TRAV5*01 TRAJ23*01 16.0 1358.0 TGCAGCGTGGGGACAGGGGGAACTAATGAAAAACTGTTTTTT CSVGTGGTNEKLFF TRBV29-1*01 TRBJ1-4*01 38.0 1796.0 CAESTSGGKLIF_CSVGTGGTNEKLFF 107 2338 EBV-BLMF1 EBV 0.75 2531 NEG 179 2159 12 EBV BLMF1 GLCTLVAML effector T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*02:01 B2M MHCI -1519 chip0420_676189 5.93 12.93 Chip1 T1D_1 T1D TGTGCCAGTAGTATAATCGATAGGACTCTTGGAACAGATACGCAGTATTTT CASSIIDRTLGTDTQYF TRBV19*01 TRBJ2-3*01 38.0 1726.0 _CASSIIDRTLGTDTQYF 3 6116 M1 FLU 0.89 1250 M1 174 5942 7 InfluenzaA M1 GILGFVFTL transitional T cells between effector and memory populations PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*02:01 B2M MHCI -1520 chip0420_816934 8.47 9.11 Chip1 T1D_1 T1D TGTGCCAGCAGCCCGGACCAAACCAGCTCCTACAATGAGCAGTTCTTC CASSPDQTSSYNEQFF TRBV27*01 TRBJ2-1*01 16.0 811.0 _CASSPDQTSSYNEQFF 47 5735 EBV-BRLF1 EBV 0.81 1264 EBV-BRLF1 171 5564 8 EBV BRLF1 YVLDHLIVV effector memory T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*02:01 B2M MHCI -1521 chip0420_417667 15.85 10.08 Chip1 T1D_2 T1D TGCAGCGTGGGGACAGGGGGAACTAATGAAAAACTGTTTTTT CSVGTGGTNEKLFF TRBV29-1*01 TRBJ1-4*01 70.0 3858.0 _CSVGTGGTNEKLFF 638 2780 EBV-BLMF1 EBV 0.75 2531 NEG 164 2616 12 EBV BLMF1 GLCTLVAML effector T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*02:01 B2M MHCI -1522 chip0420_208329 11.1 9.8 Chip1 T1D_2 T1D _ 6746 2653 EBV-BLMF1 EBV 1.0 2531 NEG 193 2460 9 EBV BLMF1 GLCTLVAML effector memory T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*02:01 B2M MHCI -1523 chip0420_57494 14.64 9.18 Chip1 T1D_1 T1D TGTGCCGTGAAGGACACCGACAAGCTCATCTTT CAVKDTDKLIF TRAV8-1*01 TRAJ34*01 31.0 2266.0 TGTGCCATCAGTGAGGGGACGCTGAGCTCCTACAATGAGCAGTTCTTC CAISEGTLSSYNEQFF TRBV10-3*01 TRBJ2-1*01 19.0 892.0 CAVKDTDKLIF_CAISEGTLSSYNEQFF 1 2590 EBV-BRLF1 EBV 0.84 1264 EBV-BRLF1 173 2417 12 EBV BRLF1 YVLDHLIVV effector T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*02:01 B2M MHCI -1524 chip0420_686622 13.11 10.05 Chip1 T1D_2 T1D TGCAGCGTGGGGACAGGGGGAACTAATGAAAAACTGTTTTTT CSVGTGGTNEKLFF TRBV29-1*01 TRBJ1-4*01 22.0 1186.0 _CSVGTGGTNEKLFF 638 3414 EBV-BLMF1 EBV 0.5 2531 NEG 165 3249 8 EBV BLMF1 GLCTLVAML effector memory T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*02:01 B2M MHCI -1525 chip0420_751826 12.21 8.71 Chip1 T1D_2 T1D _ 6746 2335 EBV-BRLF1 EBV 1.0 1264 EBV-BRLF1 178 2157 10 EBV BRLF1 YVLDHLIVV effector memory T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*02:01 B2M MHCI -1526 chip0420_216211 10.9 11.76 Chip1 T1D_2 T1D TGCAGCGTTGACCAAAGGACAGGGCAAAAGAAGAACTATGGCTACACCTTC CSVDQRTGQKKNYGYTF TRBV29-1*01 TRBJ1-2*01 119.0 5671.0 _CSVDQRTGQKKNYGYTF 40 2309 EBV-BLMF1 EBV 1.0 2531 NEG 160 2149 9 EBV BLMF1 GLCTLVAML effector memory T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*02:01 B2M MHCI -1527 chip0420_87444 8.22 11.8 Chip1 T1D_2 T1D TGTGCAGCATACGCAGGCAACATGCTCCCCTTT CAAYAGNMLPF TRAV29/DV5*01 TRAJ39*01 5.0 439.0 TGCGCCAGCAGGATGGGGGCCGGGGATACGCAGTATTTT CASRMGAGDTQYF TRBV10-2*01 TRBJ2-3*01 56.0 3925.0 CAAYAGNMLPF_CASRMGAGDTQYF 2 2782 EBV-BLMF1 EBV 0.5 2531 NEG 169 2613 7 EBV BLMF1 GLCTLVAML transitional T cells between effector and memory populations PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*02:01 B2M MHCI -1528 chip0420_692204 10.91 7.88 Chip1 T1D_2 T1D TGCGCCAGCAGCTTGGAGGGTCAGGCCAGCTCCTACGAGCAGTACTTC CASSLEGQASSYEQYF TRBV5-1*01 TRBJ2-7*01 35.0 2434.0 _CASSLEGQASSYEQYF 9 5105 EBV-LMP2A EBV 0.97 700 EBV-LMP2A 176 4929 6 EBV LMP2A CLGGLLTMV central memory T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*02:01 B2M MHCI -1529 chip0420_472328 12.95 8.63 Chip1 T1D_2 T1D TGTGCCTTAGGAGGACTGACCTTT CALGGLTF TRAV8-1*01 TRAJ22*01 4.0 745.0 TGTGCCAGCAGCCCCTCGACTAGCGGGAGTGGGGAGACCCAGTACTTC CASSPSTSGSGETQYF TRBV3-1*01 TRBJ2-5*01 22.0 1088.0 CALGGLTF_CASSPSTSGSGETQYF 12 1786 EBV-BRLF1 EBV 1.0 1264 EBV-BRLF1 153 1633 10 EBV BRLF1 YVLDHLIVV effector memory T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*02:01 B2M MHCI -1530 chip0420_126405 5.99 11.73 Chip1 T1D_2 T1D TGTGCCTGGAGTGTACAGCTAGCGGGAGTAGACGAGCAGTACTTC CAWSVQLAGVDEQYF TRBV30*01 TRBJ2-7*01 20.0 1129.0 _CAWSVQLAGVDEQYF 11 4659 EBV-BRLF1 EBV 1.0 1264 EBV-BRLF1 149 4510 7 EBV BRLF1 YVLDHLIVV transitional T cells between effector and memory populations PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*02:01 B2M MHCI -1531 chip0420_107130 6.3 13.93 Chip1 T1D_1 T1D _ 6746 3802 M1 FLU 0.54 1250 M1 160 3642 7 InfluenzaA M1 GILGFVFTL transitional T cells between effector and memory populations PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*02:01 B2M MHCI -1532 chip0420_607054 6.89 13.74 Chip1 T1D_1 T1D TGTGCCAGTAGTGTCAGGGCAAGAGAGACCCAGTACTTC CASSVRARETQYF TRBV19*01 TRBJ2-5*01 7.0 249.0 _CASSVRARETQYF 1 3803 M1 FLU 0.72 1250 NEG 176 3627 7 InfluenzaA M1 GILGFVFTL transitional T cells between effector and memory populations PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*02:01 B2M MHCI -1533 chip0420_149351 12.59 9.26 Chip1 T1D_1 T1D TGCATCCTGAGACGCTATGGAGGAAGCCAAGGAAATCTCATCTTT CILRRYGGSQGNLIF TRAV26-2*01 TRAJ42*01 49.0 2178.0 TGTGCCAGCAGCCCAGTTAGCGGGTCAACCTACGAGCAGTACTTC CASSPVSGSTYEQYF TRBV3-1*01 TRBJ2-7*01 5.0 183.0 CILRRYGGSQGNLIF_CASSPVSGSTYEQYF 8 3912 EBV-BLMF1 EBV 0.73 2531 NEG 178 3734 10 EBV BLMF1 GLCTLVAML effector memory T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*02:01 B2M MHCI -1534 chip0420_819196 10.95 11.78 Chip1 T1D_1 T1D TGTGCCAGCAGCACGGGACAGCTATCGAACACCGGGGAGCTGTTTTTT CASSTGQLSNTGELFF TRBV9*01 TRBJ2-2*01 1.0 12.0 _CASSTGQLSNTGELFF 82 3317 EBV-BLMF1 EBV 0.6 2531 NEG 160 3157 9 EBV BLMF1 GLCTLVAML effector memory T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*02:01 B2M MHCI -1535 chip0420_330449 -0.58 9.19 Chip1 T1D_1 T1D TGTGCCAGCAGCTTATTCCCCACCGCACTCCGCTCCTACGAGCAGTACTTC CASSLFPTALRSYEQYF TRBV7-8*01 TRBJ2-7*01 22.0 907.0 _CASSLFPTALRSYEQYF 1 4662 POL-132-140 HIV 0.59 37 NEG 175 4487 4 HIV-1 POL LVGPTPVNI Naive T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*02:01 B2M MHCI -1536 chip0420_26831 15.98 11.85 Chip1 T1D_2 T1D TGCGCCAGCAGCTTGGCCGAGGGACTAACAACTAGCACAGATACGCAGTATTTT CASSLAEGLTTSTDTQYF TRBV5-1*01 TRBJ2-3*01 7.0 257.0 _CASSLAEGLTTSTDTQYF 1 1590 EBV-BLMF1 EBV 0.75 2531 NEG 186 1404 12 EBV BLMF1 GLCTLVAML effector T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*02:01 B2M MHCI -1537 chip0420_773043 14.2 10.67 Chip1 T1D_1 T1D TGTGCTCTCTATAACACCGACAAGCTCATCTTT CALYNTDKLIF TRAV9-2*01 TRAJ34*01 28.0 2147.0 TGTGCCAGCAGCCCAGTTAGCGGGTCAACCTACGAGCAGTACTTC CASSPVSGSTYEQYF TRBV3-1*01 TRBJ2-7*01 2.0 156.0 CALYNTDKLIF_CASSPVSGSTYEQYF 15 3288 EBV-BLMF1 EBV 0.82 2531 NEG 177 3111 12 EBV BLMF1 GLCTLVAML effector T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*02:01 B2M MHCI -1538 chip0420_398436 11.93 10.6 Chip1 T1D_1 T1D TGCAGTGCTGCCGACCAAACCTACAATGAGCAGTTCTTC CSAADQTYNEQFF TRBV20-1*01 TRBJ2-1*01 12.0 606.0 _CSAADQTYNEQFF 5 3081 EBV-BRLF1 EBV 0.96 1264 EBV-BRLF1 210 2871 9 EBV BRLF1 YVLDHLIVV effector memory T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*02:01 B2M MHCI -1539 chip0420_101784 9.83 7.51 Chip1 T1D_2 T1D TGCGCCAGCAGAGCGGGAGCCGGGGACACGCAGTATTTT CASRAGAGDTQYF TRAV9-1*01 TRAJ40*01 1.0 25.0 TGCGCCAGCAGAGCGGGAGCCGGGGATACGCAGTATTTT CASRAGAGDTQYF TRBV10-2*01 TRBJ2-3*01 56.0 3562.0 CASRAGAGDTQYF_CASRAGAGDTQYF 4 3101 EBV-BLMF1 EBV 0.42 2531 NEG 170 2931 8 EBV BLMF1 GLCTLVAML effector memory T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*02:01 B2M MHCI -1540 chip0420_724607 10.39 7.98 Chip1 T1D_2 T1D TGTGCCAGCACCCCCGATATTAACACTGAAGCTTTCTTT CASTPDINTEAFF TRBV6-1*01 TRBJ1-1*01 37.0 1729.0 _CASTPDINTEAFF 4 3365 EBV-BLMF1 EBV 0.5 2531 NEG 176 3189 10 EBV BLMF1 GLCTLVAML effector memory T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*02:01 B2M MHCI -1541 chip0420_510274 11.19 7.19 Chip1 T1D_2 T1D TGTGCCAGCACCAACCAGGGGGAGGAGACCCAGTACTTC CASTNQGEETQYF TRBV6-2*01,TRBV6-3*01 TRBJ2-5*01 28.0 1713.0 _CASTNQGEETQYF 1 2964 EBV-BRLF1 EBV 0.97 1264 EBV-BRLF1 195 2769 10 EBV BRLF1 YVLDHLIVV effector memory T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*02:01 B2M MHCI -1542 chip0420_203452 12.26 8.92 Chip1 T1D_1 T1D _ 6746 2740 EBV-BLMF1 EBV 0.71 2531 NEG 199 2541 10 EBV BLMF1 GLCTLVAML effector memory T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*02:01 B2M MHCI -1543 chip0420_181813 12.61 7.36 Chip1 T1D_2 T1D TGTGCAATGAGAGAGGGCACGGGCAACTTCAACAAATTTTACTTT CAMREGTGNFNKFYF TRAV14/DV4*01 TRAJ21*01 26.0 1385.0 TGTGCCAGCAAGGGGATCGATGGCTACACCTTC CASKGIDGYTF TRBV13*01 TRBJ1-2*01 36.0 3179.0 CAMREGTGNFNKFYF_CASKGIDGYTF 6 2465 EBV-BRLF1 EBV 0.94 1264 EBV-BRLF1 199 2266 10 EBV BRLF1 YVLDHLIVV effector memory T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*02:01 B2M MHCI -1544 chip0420_40655 -2.41 9.19 Chip1 T1D_1 T1D _ 6746 5332 PGT-178 PGT 0.77 1480 PGT-178 155 5177 2 HomoSapiens PGT LLAGIGTVPI Naive T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*02:01 B2M MHCI -1545 chip0420_842014 13.97 9.21 Chip1 T1D_1 T1D TGCGGCACAGAGGAACCTAACGACTACAAGCTCAGCTTT CGTEEPNDYKLSF TRAV30*01 TRAJ20*01 34.0 2250.0 CGTEEPNDYKLSF_ 22 4503 EBV-BLMF1 EBV 0.71 2531 EBV-BLMF1 171 4332 12 EBV BLMF1 GLCTLVAML effector T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*02:01 B2M MHCI -1546 chip0420_79631 12.39 6.55 Chip1 T1D_2 T1D TGCAGCGTGGGGACAGGGGGAACTAATGAAAAACTGTTTTTT CSVGTGGTNEKLFF TRBV29-1*01 TRBJ1-4*01 109.0 5509.0 _CSVGTGGTNEKLFF 638 3968 EBV-BLMF1 EBV 0.44 2531 NEG 177 3791 10 EBV BLMF1 GLCTLVAML effector memory T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*02:01 B2M MHCI -1547 chip0420_372853 12.41 12.86 Chip1 T1D_2 T1D TGTGCCAGTAGGGCCCTCTTGGGAAGCAATCAGCCCCAGCATTTT CASRALLGSNQPQHF TRBV19*01 TRBJ1-5*01 26.0 687.0 _CASRALLGSNQPQHF 8 2065 EBV-BRLF1 EBV 0.93 1264 NEG 163 1902 11 EBV BRLF1 YVLDHLIVV effector T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*02:01 B2M MHCI -1548 chip0420_777884 9.44 7.73 Chip1 T1D_1 T1D _ 6746 3883 EBV-BLMF1 EBV 0.71 2531 NEG 162 3721 8 EBV BLMF1 GLCTLVAML effector memory T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*02:01 B2M MHCI -1549 chip0420_376482 -1.25 6.67 Chip1 T1D_1 T1D TGTGCCAGCAGCCAAGATTACAGGGGTACTTTCTTT CASSQDYRGTFF TRBV3-1*01 TRBJ1-1*01 1.0 81.0 _CASSQDYRGTFF 1 6462 POL-132-140 HIV 0.92 37 NEG 168 6294 3 HIV-1 POL LVGPTPVNI Naive T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*02:01 B2M MHCI -1550 chip0420_78708 13.98 10.61 Chip1 T1D_2 T1D TGCAGCGTGGGGACAGGGGGAACTAATGAAAAACTGTTTTTT CSVGTGGTNEKLFF TRBV29-1*01 TRBJ1-4*01 94.0 4236.0 _CSVGTGGTNEKLFF 638 3443 EBV-BLMF1 EBV 0.43 2531 NEG 176 3267 12 EBV BLMF1 GLCTLVAML effector T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*02:01 B2M MHCI -1551 chip0420_625573 13.15 7.75 Chip1 T1D_2 T1D TGTGCAGAGAGTACTTCGGGAGGAAAGCTTATCTTC CAESTSGGKLIF TRAV5*01 TRAJ23*01 15.0 796.0 TGCAGCGTGGGGACAGGGGGAACTAATGAAAAACTGTTTTTT CSVGTGGTNEKLFF TRBV29-1*01 TRBJ1-4*01 124.0 5934.0 CAESTSGGKLIF_CSVGTGGTNEKLFF 107 3666 EBV-BLMF1 EBV 0.57 2531 NEG 171 3495 10 EBV BLMF1 GLCTLVAML effector memory T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*02:01 B2M MHCI -1552 chip0420_3126 9.43 10.45 Chip1 T1D_2 T1D TGTGCCTTCGGCGGACTGACCTTT CAFGGLTF TRAV8-1*01 TRAJ22*01 21.0 2197.0 CAFGGLTF_ 2 4203 EBV-BRLF1 EBV 0.97 1264 EBV-BRLF1 185 4018 9 EBV BRLF1 YVLDHLIVV effector memory T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*02:01 B2M MHCI -1553 chip0420_622128 13.34 9.52 Chip1 T1D_2 T1D TGTGCCAGCAGCTCGGGACTAGTCGCCCCCGGGGAGCTGTTTTTT CASSSGLVAPGELFF TRBV2*01 TRBJ2-2*01 75.0 4201.0 _CASSSGLVAPGELFF 133 3093 EBV-BLMF1 EBV 0.45 2531 NEG 185 2908 10 EBV BLMF1 GLCTLVAML effector memory T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*02:01 B2M MHCI -1554 chip0420_534504 6.77 12.86 Chip1 T1D_1 T1D TGTGCTGTGCCCCTGGGGGGTTTTCTGGTGGCTACAATACGCTGATTTTT CAVPLGGFc?tGGYNTLIF TRAV20*01 TRAJ4*01 80.0 4231.0 TGTGCCAGTAGTATAAATGGGGGCCGGAGGGATGGCTACACCTTC CASSINGGRRDGYTF TRBV19*01 TRBJ1-2*01 6.0 293.0 CAVPLGGFc?tGGYNTLIF_CASSINGGRRDGYTF 1 3365 M1 FLU 0.62 1250 NEG 171 3194 7 InfluenzaA M1 GILGFVFTL transitional T cells between effector and memory populations PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*02:01 B2M MHCI -1555 chip0420_354443 10.09 10.61 Chip1 T1D_1 T1D _ 6746 3145 EBV-BLMF1 EBV 0.67 2531 NEG 166 2979 9 EBV BLMF1 GLCTLVAML effector memory T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*02:01 B2M MHCI -1556 chip0420_436896 11.72 12.14 Chip1 T1D_2 T1D TGCAGCGTTGGGGGCAGCTTCTATGGCTACACCTTC CSVGGSFYGYTF TRBV29-1*01 TRBJ1-2*01 78.0 6384.0 _CSVGGSFYGYTF 42 2877 EBV-BLMF1 EBV 0.57 2531 NEG 178 2699 11 EBV BLMF1 GLCTLVAML effector T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*02:01 B2M MHCI -1557 chip0420_316146 -4.48 8.37 Chip1 T1D_1 T1D _ 6746 5153 MART1-ALA MART1 0.61 269 MART1-ALA 149 5004 2 HomoSapiens MART1 ALAGIGILTV Naive T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*02:01 B2M MHCI -1558 chip0420_6675 15.69 8.92 Chip1 T1D_1 T1D TGCAGCGTCGGCTCCAGGGGAACTAATGAAAAACTGTTTTTT CSVGSRGTNEKLFF TRBV29-1*01 TRBJ1-4*01 86.0 4492.0 _CSVGSRGTNEKLFF 283 2461 EBV-BLMF1 EBV 0.45 2531 NEG 146 2315 12 EBV BLMF1 GLCTLVAML effector T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*02:01 B2M MHCI -1559 chip0420_815526 9.68 10.17 Chip1 T1D_1 T1D TGTGCCAGCAGTTCGGGACAGGTACTTCCCAATGAGCAGTTCTTC CASSSGQVLPNEQFF TRAV14/DV4*01 TRAJ37*01,TRAJ50*01 2.0 4.0 TGTGCCAGCAGTTCGGGACAGGTACTTCCCAATGAGCAGTTCTTC CASSSGQVLPNEQFF TRBV2*01 TRBJ2-1*01 36.0 2066.0 CASSSGQVLPNEQFF_CASSSGQVLPNEQFF 3 4449 EBV-BLMF1 EBV 0.46 2531 NEG 212 4237 9 EBV BLMF1 GLCTLVAML effector memory T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*02:01 B2M MHCI -1560 chip0420_530558 5.97 12.98 Chip1 T1D_1 T1D TGTGGCACTCAAGAGAATGACAGCTGGGGGAAATTGCAGTTT CGTQENDSWGKLQF TRAV30*01 TRAJ24*01 7.0 397.0 TGTGCCAGTAGTGTCAGGGCAGGAGAGACCCAGTACTTC CASSVRAGETQYF TRBV19*01 TRBJ2-5*01 46.0 3417.0 CGTQENDSWGKLQF_CASSVRAGETQYF 9 4750 M1 FLU 0.78 1250 M1 165 4585 7 InfluenzaA M1 GILGFVFTL transitional T cells between effector and memory populations PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*02:01 B2M MHCI -1561 chip0420_695568 -4.09 9.09 Chip1 T1D_1 T1D TGTGCCAGCAGTTTATCCCCCGGCGGGGGAACTGAAGCTTTCTTT CASSLSPGGGTEAFF TRBV28*01 TRBJ1-1*01 23.0 1241.0 _CASSLSPGGGTEAFF 1 5795 MART1-A27L MART1 0.5 16 NEG 151 5644 2 HomoSapiens MART1 ELAGIGILTV Naive T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*02:01 B2M MHCI -1562 chip0420_694125 13.65 7.82 Chip1 T1D_1 T1D _ 6746 2652 EBV-BLMF1 EBV 0.71 2531 NEG 140 2512 10 EBV BLMF1 GLCTLVAML effector memory T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*02:01 B2M MHCI -1563 chip0420_430531 10.16 10.31 Chip1 T1D_1 T1D TGTGCTCTAGGAGCCCGGCCAGGCGGCAGCTACATACCTACATTT CALGARPGGSYIPTF TRAV6*01 TRAJ6*01 1.0 20.0 TGTGCCAGCAGTGACGGTCGGGTCCACCCGGGGACCCAGTACTTC CASSDGRVHPGTQYF TRBV2*01 TRBJ2-5*01 36.0 2788.0 CALGARPGGSYIPTF_CASSDGRVHPGTQYF 1 4200 EBV-BLMF1 EBV 0.75 2531 NEG 156 4044 9 EBV BLMF1 GLCTLVAML effector memory T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*02:01 B2M MHCI -1564 chip0420_113574 13.38 8.25 Chip1 T1D_2 T1D _ 6746 2229 EBV-BRLF1 EBV 0.91 1264 EBV-BRLF1 189 2040 10 EBV BRLF1 YVLDHLIVV effector memory T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*02:01 B2M MHCI -1565 chip0420_770985 11.16 7.86 Chip1 T1D_2 T1D _ 6746 2678 EBV-BLMF1 EBV 0.8 2531 NEG 179 2499 10 EBV BLMF1 GLCTLVAML effector memory T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*02:01 B2M MHCI -1566 chip0420_671425 6.2 12.65 Chip1 T1D_1 T1D _ 6746 3809 M1 FLU 0.64 1250 M1 156 3653 7 InfluenzaA M1 GILGFVFTL transitional T cells between effector and memory populations PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*02:01 B2M MHCI -1567 chip0420_87763 9.9 10.45 Chip1 T1D_2 T1D TGTGCAGCGTATGCAGGCAACATGCTCACCTTT CAAYAGNMLTF TRAV29/DV5*01 TRAJ39*01 4.0 233.0 TGCGCCAGCAGAGCGGGAGCCGGGGATACGCAGTATTTT CASRAGAGDTQYF TRBV10-2*01 TRBJ2-3*01 33.0 1967.0 CAAYAGNMLTF_CASRAGAGDTQYF 18 3838 EBV-BLMF1 EBV 0.57 2531 NEG 189 3649 9 EBV BLMF1 GLCTLVAML effector memory T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*02:01 B2M MHCI -1568 chip0420_751266 12.32 8.62 Chip1 T1D_2 T1D TGTGCCGTGAAGGACACCGACAAGCTCATCTTT CAVKDTDKLIF TRAV8-1*01 TRAJ34*01 2.0 134.0 CAVKDTDKLIF_ 56 2091 EBV-BRLF1 EBV 0.95 1264 EBV-BRLF1 194 1897 10 EBV BRLF1 YVLDHLIVV effector memory T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*02:01 B2M MHCI -1569 chip0420_322833 10.98 11.2 Chip1 T1D_1 T1D TGTGCCACCCAACAGGGGACGGACGGTCAGCCCCAGCCTTTT CATQQGTDGQPQPF TRBV28*01 TRBJ1-5*01 5.0 460.0 _CATQQGTDGQPQPF 1 2542 EBV-BLMF1 EBV 0.7 2531 NEG 172 2370 9 EBV BLMF1 GLCTLVAML effector memory T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*02:01 B2M MHCI -1570 chip0420_272816 10.39 8.2 Chip1 T1D_1 T1D TGTGTGGTGAACGGACGGGATAGCAGCTATAAATTGATCTTC CVVNGRDSSYKLIF TRAV12-1*01 TRAJ12*01 7.0 710.0 CVVNGRDSSYKLIF_ 17 2838 EBV-BLMF1 EBV 0.86 2531 NEG 159 2679 10 EBV BLMF1 GLCTLVAML effector memory T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*02:01 B2M MHCI -1571 chip0420_378272 13.06 9.55 Chip1 T1D_2 T1D _ 6746 2592 EBV-BLMF1 EBV 0.57 2531 NEG 179 2413 12 EBV BLMF1 GLCTLVAML effector T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*02:01 B2M MHCI -1572 chip0420_60961 -1.42 11.22 Chip1 T1D_1 T1D TGTGCCGTGAGTGGGGGTTACCAGAAAGTTACCTTT CAVSGGYQKVTF TRAV12-2*01 TRAJ13*01 47.0 2792.0 CAVSGGYQKVTF_ 2 5075 PGT-178 PGT 0.9 1480 PGT-178 157 4918 3 HomoSapiens PGT LLAGIGTVPI Naive T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*02:01 B2M MHCI -1573 chip0420_638568 15.32 8.96 Chip1 T1D_2 T1D TGTGCCAGCAGCCAAAGTGACCCCTCGAACACCGGGGAGCTGTTTTTT CASSQSDPSNTGELFF TRBV4-2*01 TRBJ2-2*01 61.0 2268.0 _CASSQSDPSNTGELFF 1 2013 EBV-BRLF1 EBV 0.64 1264 NEG 163 1850 12 EBV BRLF1 YVLDHLIVV effector T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*02:01 B2M MHCI -1574 chip0420_92814 15.13 8.71 Chip1 T1D_1 T1D TGCAGCGTCGGCTCCAGGGGAACTAATGAAAAACTGTTTTTT CSVGSRGTNEKLFF TRBV29-1*01 TRBJ1-4*01 143.0 7464.0 _CSVGSRGTNEKLFF 283 3221 EBV-BLMF1 EBV 0.56 2531 NEG 157 3064 12 EBV BLMF1 GLCTLVAML effector T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*02:01 B2M MHCI -1575 chip0420_848386 12.38 13.2 Chip1 T1D_2 T1D TGTGCCAGCAGTTGGACAGCCTCCTACGAGCAGTACTTC CASSWTASYEQYF TRBV6-2*01,TRBV6-3*01 TRBJ2-7*01 5.0 306.0 _CASSWTASYEQYF 2 1867 EBV-BRLF1 EBV 0.95 1264 EBV-BRLF1 190 1677 11 EBV BRLF1 YVLDHLIVV effector T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*02:01 B2M MHCI -1576 chip0420_841015 11.25 7.5 Chip1 T1D_2 T1D TGTGCAGCGTATGCAGGCAACATGCTCACCTTT CAAYAGNMLTF TRAV29/DV5*01 TRAJ39*01 21.0 2115.0 TGCGCCAGCAGAGCGGGAGCCGGGGATACGCAGTATTTT CASRAGAGDTQYF TRBV10-2*01 TRBJ2-3*01 7.0 452.0 CAAYAGNMLTF_CASRAGAGDTQYF 18 3752 EBV-BLMF1 EBV 0.5 2531 NEG 179 3573 10 EBV BLMF1 GLCTLVAML effector memory T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*02:01 B2M MHCI -1577 chip0420_376931 14.65 9.83 Chip1 T1D_2 T1D TGTGCCAGTAGTATGTTGTTGGGTGGCAATCAGCCCCAGCATTTT CASSMLLGGNQPQHF TRBV19*01 TRBJ1-5*01 42.0 1499.0 _CASSMLLGGNQPQHF 2 3127 EBV-BRLF1 EBV 1.0 1264 NEG 165 2962 12 EBV BRLF1 YVLDHLIVV effector T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*02:01 B2M MHCI -1578 chip0420_67626 9.49 10.68 Chip1 T1D_2 T1D TGCAGCGTGGGGACAGGGGGAACTAATGAAAAACTGTTTTTT CSVGTGGTNEKLFF TRBV29-1*01 TRBJ1-4*01 51.0 2438.0 _CSVGTGGTNEKLFF 638 4100 EBV-BLMF1 EBV 0.75 2531 NEG 165 3935 9 EBV BLMF1 GLCTLVAML effector memory T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*02:01 B2M MHCI -1579 chip0420_449203 13.84 8.2 Chip1 T1D_2 T1D TGTGCTTCCCTAACCCCGGGGGCTTCCTTGATAATCTTT CASLTPGASLIIF TRAV8-6*01 TRAJ3*01 7.0 1034.0 TGTGCCAGCAGCTCGGGACTAGTCGCCCCCGGGGAGCTGTTTTTT CASSSGLVAPGELFF TRBV2*01 TRBJ2-2*01 103.0 4477.0 CASLTPGASLIIF_CASSSGLVAPGELFF 1 3383 EBV-BLMF1 EBV 0.6 2531 NEG 200 3183 10 EBV BLMF1 GLCTLVAML effector memory T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*02:01 B2M MHCI -1580 chip0420_441053 9.59 9.0 Chip1 T1D_1 T1D TGTGCCACCCAACAGGGGAGGGACAGTCAGCCCCAGCATTTT CATQQGRDSQPQHF TRBV28*01 TRBJ1-5*01 52.0 2379.0 _CATQQGRDSQPQHF 52 4666 EBV-BLMF1 EBV 1.0 2531 NEG 176 4490 8 EBV BLMF1 GLCTLVAML effector memory T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*02:01 B2M MHCI -1581 chip0420_374869 9.11 9.81 Chip1 T1D_2 T1D _ 6746 3663 EBV-BRLF1 EBV 0.89 1264 EBV-BRLF1 161 3502 8 EBV BRLF1 YVLDHLIVV effector memory T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*02:01 B2M MHCI -1582 chip0420_228042 9.56 9.45 Chip1 T1D_1 T1D TGCAGTGCTAGTCCCCTGGGGCGGGAGGGGAACAATGAGCAGTTCTTC CSASPLGREGNNEQFF TRBV20-1*01 TRBJ2-1*01 29.0 2103.0 _CSASPLGREGNNEQFF 1 4259 EBV-BLMF1 EBV 1.0 2531 NEG 166 4093 8 EBV BLMF1 GLCTLVAML effector memory T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*02:01 B2M MHCI -1583 chip0420_628193 11.06 10.54 Chip1 T1D_1 T1D TGCAGCGTCGGCTCCAGGGGAACTAATGAAAAACTGTTTTTT CSVGSRGTNEKLFF TRBV29-1*01 TRBJ1-4*01 36.0 1573.0 _CSVGSRGTNEKLFF 283 3179 EBV-BLMF1 EBV 0.73 2531 NEG 163 3016 9 EBV BLMF1 GLCTLVAML effector memory T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*02:01 B2M MHCI -1584 chip0420_79756 14.58 8.4 Chip1 T1D_2 T1D TGTGCCGTGAAGGACACCGACAAGCTCATCTTT CAVKDTDKLIF TRAV8-1*01 TRAJ34*01 18.0 2052.0 CAVKDTDKLIF_ 56 2077 EBV-BRLF1 EBV 0.85 1264 NEG 172 1905 12 EBV BRLF1 YVLDHLIVV effector T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*02:01 B2M MHCI -1585 chip0420_799261 11.46 6.57 Chip1 T1D_2 T1D TGTGCAGAGAGTACTTCGGGAGGAAAGCTTATCTTC CAESTSGGKLIF TRAV5*01 TRAJ23*01 29.0 2094.0 TGCAGCGTGGGGACAGGGGGAACTAATGAAAAACTGTTTTTT CSVGTGGTNEKLFF TRBV29-1*01 TRBJ1-4*01 43.0 2071.0 CAESTSGGKLIF_CSVGTGGTNEKLFF 107 4340 EBV-BLMF1 EBV 0.88 2531 NEG 204 4136 10 EBV BLMF1 GLCTLVAML effector memory T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*02:01 B2M MHCI -1586 chip0420_252656 8.57 10.7 Chip1 T1D_1 T1D TGTGCCAGCCGTGCGTGGCTCCGGTGGGCTGAGATGGAAAACTGTTTTTT CASRAWLRt?gG*DGKLFF TRBV2*01 TRBJ1-4*01 14.0 736.0 _CASRAWLRt?gG*DGKLFF 1 3475 EBV-BRLF1 EBV 1.0 1264 NEG 185 3290 8 EBV BRLF1 YVLDHLIVV effector memory T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*02:01 B2M MHCI -1587 chip0420_860739 13.11 10.83 Chip1 T1D_2 T1D TGTGCCTTCGGCGGACTGACCTTT CAFGGLTF TRAV8-1*01 TRAJ22*01 21.0 2228.0 TGTGCCAGCAGCCCCTCGACTAGCGGGAGTGGGGAGACCCAGTACTTC CASSPSTSGSGETQYF TRBV3-1*01 TRBJ2-5*01 55.0 2905.0 CAFGGLTF_CASSPSTSGSGETQYF 3 2287 EBV-BRLF1 EBV 1.0 1264 EBV-BRLF1 179 2108 9 EBV BRLF1 YVLDHLIVV effector memory T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*02:01 B2M MHCI -1588 chip0420_396837 13.03 10.76 Chip1 T1D_2 T1D TGTGCCAGCAGCTCGGGACTAGTCGCCCCCGGGGAGCTGTTTTTT CASSSGLVAPGELFF TRBV2*01 TRBJ2-2*01 17.0 1109.0 _CASSSGLVAPGELFF 133 3685 EBV-BLMF1 EBV 0.67 2531 NEG 186 3499 9 EBV BLMF1 GLCTLVAML effector memory T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*02:01 B2M MHCI -1589 chip0420_308090 8.66 10.59 Chip1 T1D_2 T1D TGCAGCGTGGGGACAGGGGGAACTAATGAAAAACTGTTTTTT CSVGTGGTNEKLFF TRBV29-1*01 TRBJ1-4*01 15.0 1098.0 _CSVGTGGTNEKLFF 638 4010 EBV-BLMF1 EBV 0.6 2531 NEG 164 3846 8 EBV BLMF1 GLCTLVAML effector memory T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*02:01 B2M MHCI -1590 chip0420_780246 8.56 10.68 Chip1 T1D_2 T1D TGTGCTGGGTCCGATTTTCAGGGAGCCCAGAAGCTGGTATTT CAGSDFQGAQKLVF TRAV35*01 TRAJ54*01 29.0 2111.0 TGCGCCAGCAGCTTGGCAGGGGGCGGCGAGCAGTACTTC CASSLAGGGEQYF TRBV5-1*01 TRBJ2-7*01 22.0 1809.0 CAGSDFQGAQKLVF_CASSLAGGGEQYF 1 4015 EBV-BRLF1 EBV 0.85 1264 EBV-BRLF1 150 3865 8 EBV BRLF1 YVLDHLIVV effector memory T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*02:01 B2M MHCI -1591 chip0420_52534 11.31 6.61 Chip1 T1D_2 T1D TGTGCTGTCCTTATGGATAGCAACTATCAGTTAATCTGG CAVLMDSNYQLIW TRAV21*01 TRAJ33*01 38.0 2086.0 TGTGCAGCAAGCCTATGAGAAGTGGAGGTAGCAACTATAAACTGACATTT CAASL*EVg?aGSNYKLTF TRAV23/DV6*01 TRAJ53*01 39.0 1293.0 0.43 TGCGCCAGCAGTGAGGACGGTATGAACACTGAAGCTTTCTTT CASSEDGMNTEAFF TRBV10-2*01 TRBJ1-1*01 23.0 850.0 CAVLMDSNYQLIW_CASSEDGMNTEAFF 6 6160 EBV-LMP2A EBV 0.88 700 EBV-LMP2A 167 5993 10 EBV LMP2A CLGGLLTMV effector memory T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*02:01 B2M MHCI -1592 chip0420_873189 13.43 9.69 Chip1 T1D_2 T1D TGTGCCGCGCCGGACACCGACAAGCTCATCTTT CAAPDTDKLIF TRAV8-1*01 TRAJ34*01 23.0 2097.0 CAAPDTDKLIF_ 1 2768 EBV-BRLF1 EBV 1.0 1264 EBV-BRLF1 173 2595 10 EBV BRLF1 YVLDHLIVV effector memory T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*02:01 B2M MHCI -1593 chip0420_351065 11.75 10.05 Chip1 T1D_1 T1D TGTGCCAGCAGTTCGGGACAGGTACTTCCCAATGAGCAGTTCTTC CASSSGQVLPNEQFF TRBV2*01 TRBJ2-1*01 52.0 3386.0 _CASSSGQVLPNEQFF 61 2867 EBV-BLMF1 EBV 0.8 2531 NEG 138 2729 9 EBV BLMF1 GLCTLVAML effector memory T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*02:01 B2M MHCI -1594 chip0420_347112 9.82 9.96 Chip1 T1D_1 T1D TGCCTCCTGTCTTTATTCGGGCCGCCCGAGACGCAATGCCGGCAAATCAACATTT CLLSLFGPP??gRRNAGKSTF TRAV26-2*01 TRAJ27*01 5.0 207.0 CLLSLFGPP??gRRNAGKSTF_ 1 3704 EBV-BLMF1 EBV 0.75 2531 NEG 162 3542 9 EBV BLMF1 GLCTLVAML effector memory T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*02:01 B2M MHCI -1595 chip0420_301363 10.08 10.45 Chip1 T1D_2 T1D TGCAGCGTGGGGACAGGGGGAACTAATGAAAAACTGTTTTTT CSVGTGGTNEKLFF TRBV29-1*01 TRBJ1-4*01 40.0 1821.0 _CSVGTGGTNEKLFF 638 2512 EBV-BLMF1 EBV 0.83 2531 NEG 186 2326 9 EBV BLMF1 GLCTLVAML effector memory T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*02:01 B2M MHCI -1596 chip0420_779128 6.52 12.43 Chip1 T1D_1 T1D _ 6746 5683 M1 FLU 0.87 1250 M1 156 5527 7 InfluenzaA M1 GILGFVFTL transitional T cells between effector and memory populations PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*02:01 B2M MHCI -1597 chip0420_118161 13.92 7.54 Chip1 T1D_1 T1D TGCGGCCCAGAGGAACCTAACGACTACAAGCTCAGCTTT CGPEEPNDYKLSF TRAV30*01 TRAJ20*01 7.0 342.0 TGTGCCAGCAGCACGGGACAGCTATCGAACACCGGGGAGCTGTTTTTT CASSTGQLSNTGELFF TRBV9*01 TRBJ2-2*01 28.0 1340.0 CGPEEPNDYKLSF_CASSTGQLSNTGELFF 14 2914 EBV-BLMF1 EBV 0.6 2531 NEG 163 2751 10 EBV BLMF1 GLCTLVAML effector memory T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*02:01 B2M MHCI -1598 chip0420_591246 9.42 7.64 Chip1 T1D_1 T1D TGTGCCACCCAACAGGAGAGGGACAGTCAGCCCCAGCATTTT CATQQERDSQPQHF TRBV28*01 TRBJ1-5*01 52.0 3026.0 _CATQQERDSQPQHF 2 3071 EBV-BLMF1 EBV 0.7 2531 NEG 144 2927 8 EBV BLMF1 GLCTLVAML effector memory T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*02:01 B2M MHCI -1599 chip0420_283525 -1.9 10.01 Chip1 T1D_1 T1D TGTGCAATGAGCAATTCTAACTTTGGAAATGAGAAATTAACCTTT CAMSNSNFGNEKLTF TRAV12-3*01 TRAJ48*01 118.0 3987.0 CAMSNSNFGNEKLTF_ 1 5079 PGT-178 PGT 0.5 1480 PGT-178 156 4923 3 HomoSapiens PGT LLAGIGTVPI Naive T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*02:01 B2M MHCI -1600 chip0420_265376 6.04 13.38 Chip1 T1D_1 T1D TGTGCCTGTAGTATCAATGGGGGCCGGAGGGATGGCTACACCTTC CACSINGGRRDGYTF TRBV19*01 TRBJ1-2*01 14.0 462.0 _CACSINGGRRDGYTF 1 3943 M1 FLU 0.81 1250 NEG 175 3768 7 InfluenzaA M1 GILGFVFTL transitional T cells between effector and memory populations PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*02:01 B2M MHCI -1601 chip0420_102119 6.11 12.54 Chip1 T1D_1 T1D TGTGCCTCCTTTGATGGAGGAAGCCAAGGAAATCTCATCTTT CASFDGGSQGNLIF TRAV24*01 TRAJ42*01 41.0 2134.0 TGTGTGGTGAACACCGTAAGATAAGAAACCAGTGGCTCTAGGTTGACCTTT CVVNTVR*ETSGSRLTF TRAV12-1*01 TRAJ10*01 38.0 1980.0 0.39 TGTGCCAGTAGTATAGCCGGATTCGAGCAGTACTTC CASSIAGFEQYF TRBV19*01 TRBJ2-7*01 20.0 1280.0 CASFDGGSQGNLIF_CASSIAGFEQYF 1 4339 M1 FLU 0.75 1250 NEG 166 4173 7 InfluenzaA M1 GILGFVFTL transitional T cells between effector and memory populations PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*02:01 B2M MHCI -1602 chip0420_656462 10.58 10.43 Chip1 T1D_1 T1D TGTGCCAGCAGTTCCGGCGGGCCCGTGGATACGCCGTATTTT CASSSGGPVDTPYF TRBV7-3*01 TRBJ2-3*01 3.0 167.0 _CASSSGGPVDTPYF 1 5248 EBV-BLMF1 EBV 0.46 2531 NEG 170 5078 9 EBV BLMF1 GLCTLVAML effector memory T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*02:01 B2M MHCI -1603 chip0420_427018 13.6 13.09 Chip1 T1D_2 T1D TGCGCCAACAGAGCGGGAGCCGGGGATACGCAGTATTTT CANRAGAGDTQYF TRBV10-2*01 TRBJ2-3*01 20.0 1294.0 _CANRAGAGDTQYF 1 1812 EBV-BLMF1 EBV 0.67 2531 NEG 174 1638 12 EBV BLMF1 GLCTLVAML effector T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*02:01 B2M MHCI -1604 chip0420_380960 11.14 12.53 Chip1 T1D_1 T1D _ 6746 1767 EBV-BLMF1 EBV 0.62 2531 NEG 175 1592 11 EBV BLMF1 GLCTLVAML effector T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*02:01 B2M MHCI -1605 chip0420_89882 8.26 8.51 Chip1 tet_neg TGTGCCAACAGTGAAGGGCGAGTCTCTCCGGGCGAAGCTTTCTTT CANSEGRVSPGEAFF TRBV2*01 TRBJ1-1*01 36.0 1976.0 _CANSEGRVSPGEAFF 1 7878 EBV-BLMF1 EBV 0.4 2531 NEG 184 7694 8 EBV BLMF1 GLCTLVAML effector memory T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*02:01 B2M MHCI -1606 chip0420_796612 9.61 8.09 Chip1 T1D_2 T1D _ 6746 2749 EBV-BRLF1 EBV 0.94 1264 EBV-BRLF1 171 2578 8 EBV BRLF1 YVLDHLIVV effector memory T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*02:01 B2M MHCI -1607 chip0420_199251 -0.58 9.48 Chip1 T1D_1 T1D TGTGCCAGCAGCTCACTAGCGGAGTTGCAGTACTTC CASSSLAELQYF TRBV7-2*01 TRBJ2-7*01 73.0 3903.0 _CASSSLAELQYF 1 5950 PGT-178 PGT 0.68 1480 PGT-178 143 5807 4 HomoSapiens PGT LLAGIGTVPI Naive T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*02:01 B2M MHCI -1608 chip0420_52824 6.66 13.4 Chip1 T1D_1 T1D _ 6746 3177 M1 FLU 0.76 1250 M1 172 3005 7 InfluenzaA M1 GILGFVFTL transitional T cells between effector and memory populations PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*02:01 B2M MHCI -1609 chip0420_660439 6.32 14.17 Chip1 T1D_1 T1D _ 6746 3824 M1 FLU 0.87 1250 M1 163 3661 7 InfluenzaA M1 GILGFVFTL transitional T cells between effector and memory populations PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*02:01 B2M MHCI -1610 chip0420_502000 10.39 9.41 Chip1 T1D_2 T1D _ 6746 2930 EBV-BLMF1 EBV 0.69 2531 NEG 159 2771 9 EBV BLMF1 GLCTLVAML effector memory T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*02:01 B2M MHCI -1611 chip0420_649487 -1.08 8.87 Chip1 T1D_1 T1D TGTGCTGCGACAAAACTTAGAACTCAGGGCGGATCTGAAAAGCTGGTCTTT CAATKLRTQGGSEKLVF TRAV21*01 TRAJ57*01 4.0 335.0 TGTGCCAGCAGCTTGGAGGTGCCTTCCGGGACAGGGGGCCGCGAGCAGTACTTC CASSLEVPSGTGGREQYF TRBV5-6*01 TRBJ2-7*01 25.0 1026.0 CAATKLRTQGGSEKLVF_CASSLEVPSGTGGREQYF 1 7294 PGT-178 PGT 0.65 1480 PGT-178 165 7129 3 HomoSapiens PGT LLAGIGTVPI Naive T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*02:01 B2M MHCI -1612 chip0420_384525 5.97 13.89 Chip1 T1D_1 T1D TGTGCCAGTAGTATAAATGGGGGCCGGAGGGATGGCTACACCTTC CASSINGGRRDGYTF TRBV19*01 TRBJ1-2*01 49.0 2554.0 _CASSINGGRRDGYTF 32 3835 M1 FLU 0.67 1250 NEG 183 3652 7 InfluenzaA M1 GILGFVFTL transitional T cells between effector and memory populations PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*02:01 B2M MHCI -1613 chip0420_206079 13.02 7.26 Chip1 T1D_2 T1D TGCAGCGTGGGGACAGGGGGAACTAATGAAAAACTGTTTTTT CSVGTGGTNEKLFF TRBV29-1*01 TRBJ1-4*01 76.0 3683.0 _CSVGTGGTNEKLFF 638 3069 EBV-BLMF1 EBV 0.5 2531 NEG 180 2889 10 EBV BLMF1 GLCTLVAML effector memory T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*02:01 B2M MHCI -1614 chip0420_2553 12.81 7.1 Chip1 T1D_2 T1D TGTGTGGTGAACGGCAGGGATAGCAGCTATAAATTGATCTTC CVVNGRDSSYKLIF TRAV12-1*01 TRAJ12*01 46.0 2057.0 TGTGCCAGCAGCTCGGGACTAGTCGCCCCCGGGGAGCTGTTTTTT CASSSGLVAPGELFF TRBV2*01 TRBJ2-2*01 41.0 2569.0 CVVNGRDSSYKLIF_CASSSGLVAPGELFF 98 3642 EBV-BLMF1 EBV 0.55 2531 NEG 175 3467 10 EBV BLMF1 GLCTLVAML effector memory T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*02:01 B2M MHCI -1615 chip0420_465414 14.36 10.84 Chip1 T1D_2 T1D TGTGTGGTGAACGGCAGGGATAGCAGCTATCAATTGATCTTC CVVNGRDSSYQLIF TRAV12-1*01 TRAJ12*01 69.0 2087.0 TGTGCCAGCAGCTCGGGACTAGTCGCCCCCGGGGAGCTGTTTTTT CASSSGLVAPGELFF TRBV2*01 TRBJ2-2*01 52.0 2438.0 CVVNGRDSSYQLIF_CASSSGLVAPGELFF 2 3119 EBV-BLMF1 EBV 0.78 2531 NEG 148 2971 12 EBV BLMF1 GLCTLVAML effector T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*02:01 B2M MHCI -1616 chip0420_185095 10.41 10.39 Chip1 T1D_1 T1D TGTGCCAGCAGTTCCGGGGGGAACGTGGATACGCAGTATTTT CASSSGGNVDTQYF TRBV7-3*01 TRBJ2-3*01 73.0 3426.0 _CASSSGGNVDTQYF 47 3997 EBV-BLMF1 EBV 0.57 2531 NEG 185 3812 9 EBV BLMF1 GLCTLVAML effector memory T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*02:01 B2M MHCI -1617 chip0420_402769 10.77 11.24 Chip1 T1D_1 T1D TGTGCAGAGAGTACAAGTGGGGGAAAAGCTTCTCTTC CAESTS??gGEKLLF TRAV5*01 TRAJ23*01 25.0 2034.0 TGCAGCGTCGGCTCCAGGGGAACTAATGAAAAACTGTTTTTT CSVGSRGTNEKLFF TRBV29-1*01 TRBJ1-4*01 73.0 4717.0 CAESTS??gGEKLLF_CSVGSRGTNEKLFF 1 2905 EBV-BLMF1 EBV 0.5 2531 NEG 165 2740 9 EBV BLMF1 GLCTLVAML effector memory T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*02:01 B2M MHCI -1618 chip0420_382676 6.0 13.88 Chip1 T1D_1 T1D TGTGCCAGTAGTATAAATGGGGGCCGGAGGGATGGCTACACCTTC CASSINGGRRDGYTF TRBV19*01 TRBJ1-2*01 4.0 104.0 _CASSINGGRRDGYTF 32 4320 M1 FLU 0.7 1250 M1 176 4144 7 InfluenzaA M1 GILGFVFTL transitional T cells between effector and memory populations PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*02:01 B2M MHCI -1619 chip0420_537538 5.55 11.92 Chip1 T1D_2 T1D _ 6746 3551 ZNT8-153-161 ZNT8 0.91 41 ZNT8-153-161 147 3404 7 HomoSapiens ZNT8 VVTGVLVYL transitional T cells between effector and memory populations PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*02:01 B2M MHCI -1620 chip0420_133793 -1.44 8.31 Chip1 T1D_1 T1D _ 6746 6020 PGT-178 PGT 0.56 1480 PGT-178 152 5868 3 HomoSapiens PGT LLAGIGTVPI Naive T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*02:01 B2M MHCI -1621 chip0420_797290 12.22 6.52 Chip1 T1D_2 T1D TGCAGCGTGGGGACAGGGGGAACTAATGAAAAACTGTTTTTT CSVGTGGTNEKLFF TRBV29-1*01 TRBJ1-4*01 73.0 3624.0 _CSVGTGGTNEKLFF 638 3330 EBV-BLMF1 EBV 0.75 2531 NEG 176 3154 10 EBV BLMF1 GLCTLVAML effector memory T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*02:01 B2M MHCI -1622 chip0420_538946 9.64 10.07 Chip1 T1D_2 T1D TGTGCTCTATGCGGGGGAGGAGGAACCAAACTCACCTTT CALCGGGGTKLTF TRAV16*01 TRAJ10*01 7.0 471.0 TGCGCCAGCAGACAGGGGGATGGAGATACGCAGTATTTT CASRQGDGDTQYF TRBV10-2*01 TRBJ2-3*01 42.0 2448.0 CALCGGGGTKLTF_CASRQGDGDTQYF 1 2909 EBV-BLMF1 EBV 0.75 2531 NEG 170 2739 8 EBV BLMF1 GLCTLVAML effector memory T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*02:01 B2M MHCI -1623 chip0420_286958 9.37 9.51 Chip1 T1D_2 T1D TGTGCCGTGAAGAGGAGAGCTGCAGGCAACAAGCTAACTTTT CAVKRRAAGNKLTF TRAV12-2*01 TRAJ17*01 40.0 2067.0 TGTGCCAGCACCGACACCCTCAGCCTCATTAACACCGGGGAGCTGTTTTTT CASTDTLSLINTGELFF TRBV28*01 TRBJ2-2*01 59.0 2482.0 CAVKRRAAGNKLTF_CASTDTLSLINTGELFF 3 4078 EBV-BRLF1 EBV 0.92 1264 EBV-BRLF1 176 3902 8 EBV BRLF1 YVLDHLIVV effector memory T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*02:01 B2M MHCI -1624 chip0420_226338 15.57 11.49 Chip1 T1D_1 T1D _ 6746 2098 EBV-BLMF1 EBV 0.88 2531 NEG 156 1942 12 EBV BLMF1 GLCTLVAML effector T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*02:01 B2M MHCI -1625 chip0420_525815 15.61 10.12 Chip1 T1D_2 T1D TGTGCTCTAAAAAACACCGACAAGCTCATCTTT CALKNTDKLIF TRAV16*01 TRAJ34*01 30.0 2283.0 TGCGCCAGCAGTCAATCGAGAGGGTCGCTCTGGGATACGCAGTATTTT CASSQSRGSLWDTQYF TRBV4-3*01 TRBJ2-3*01 139.0 5709.0 CALKNTDKLIF_CASSQSRGSLWDTQYF 5 3404 EBV-BRLF1 EBV 0.94 1264 EBV-BRLF1 158 3246 12 EBV BRLF1 YVLDHLIVV effector T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*02:01 B2M MHCI -1626 chip0420_341595 12.54 6.34 Chip1 T1D_2 T1D TGCGCCAGCAGAGCGGGAGCCGGGGATACGCAGTATTTT CASRAGAGDTQYF TRBV10-2*01 TRBJ2-3*01 35.0 2028.0 _CASRAGAGDTQYF 59 4713 EBV-BLMF1 EBV 0.71 2531 NEG 170 4543 10 EBV BLMF1 GLCTLVAML effector memory T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*02:01 B2M MHCI -1627 chip0420_68360 13.25 13.24 Chip1 T1D_2 T1D TGTGTGGTGAACGGCAGGGATAGCAGCTATAAATTGATCTTC CVVNGRDSSYKLIF TRAV12-1*01 TRAJ12*01 37.0 1774.0 TGTGCCAGCAGCTCGGGACTAGTCGCCCCCGGGGAGCTGTTTTTT CASSSGLVAPGELFF TRBV2*01 TRBJ2-2*01 27.0 1794.0 CVVNGRDSSYKLIF_CASSSGLVAPGELFF 98 1383 EBV-BLMF1 EBV 0.6 2531 NEG 156 1227 11 EBV BLMF1 GLCTLVAML effector T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*02:01 B2M MHCI -1628 chip0420_528059 13.69 10.44 Chip1 T1D_1 T1D TGTGCCACCCAACAGGGGAGGGACAGTCAGCCCCAGCATTTT CATQQGRDSQPQHF TRBV28*01 TRBJ1-5*01 79.0 4281.0 _CATQQGRDSQPQHF 52 2707 EBV-BLMF1 EBV 0.79 2531 NEG 153 2554 12 EBV BLMF1 GLCTLVAML effector T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*02:01 B2M MHCI -1629 chip0420_342133 11.03 9.13 Chip1 T1D_1 T1D CGTGCCAGCAGTTCCGGAGGGAACGTGGATACGCAGTATTTT RASSSGGNVDTQYF TRBV7-3*01 TRBJ2-3*01 28.0 1609.0 _RASSSGGNVDTQYF 1 4095 EBV-BLMF1 EBV 0.5 2531 NEG 157 3938 9 EBV BLMF1 GLCTLVAML effector memory T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*02:01 B2M MHCI -1630 chip0420_37658 12.89 6.97 Chip1 T1D_2 T1D TGCGCCAGCAGGATGGGGGCCGGGGATACGCAGTATTTT CASRMGAGDTQYF TRBV10-2*01 TRBJ2-3*01 32.0 2079.0 _CASRMGAGDTQYF 90 2358 EBV-BLMF1 EBV 0.7 2531 NEG 176 2182 10 EBV BLMF1 GLCTLVAML effector memory T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*02:01 B2M MHCI -1631 chip0420_745954 15.56 9.24 Chip1 T1D_2 T1D TGTGCTGTGGAATGGCTCTAGCAACACAGGCAAACTAATCTTT CAVEWL*??cNTGKLIF TRAV2*01 TRAJ37*01 1.0 22.0 CAVEWL*??cNTGKLIF_ 1 2361 EBV-BRLF1 EBV 0.94 1264 EBV-BRLF1 155 2206 12 EBV BRLF1 YVLDHLIVV effector T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*02:01 B2M MHCI -1632 chip0420_409736 15.3 10.4 Chip1 T1D_1 T1D TGTGCCAGCAGGGCACTACTAGGGGGTAAAGAGACCCAGTACTTC CASRALLGGKETQYF TRBV6-1*01 TRBJ2-5*01 25.0 696.0 _CASRALLGGKETQYF 3 2775 EBV-BRLF1 EBV 0.71 1264 NEG 178 2597 12 EBV BRLF1 YVLDHLIVV effector T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*02:01 B2M MHCI -1633 chip0420_852234 11.95 10.06 Chip1 T1D_1 T1D CGTGTGGTGAACGGACGGGATAGCAGCTATAAATTGATCTTC RVVNGRDSSYKLIF TRAV12-1*01 TRAJ12*01 44.0 2047.0 RVVNGRDSSYKLIF_ 1 2626 EBV-BLMF1 EBV 0.62 2531 NEG 175 2451 9 EBV BLMF1 GLCTLVAML effector memory T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*02:01 B2M MHCI -1634 chip0420_806240 14.23 10.59 Chip1 T1D_1 T1D TGTGCCACCCAACAGGGGGGGGCCAGTCAGCCCCAGCATTTT CATQQGGASQPQHF TRBV28*01 TRBJ1-5*01 16.0 547.0 _CATQQGGASQPQHF 1 3477 EBV-BLMF1 EBV 0.8 2531 NEG 161 3316 12 EBV BLMF1 GLCTLVAML effector T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*02:01 B2M MHCI -1635 chip0420_755833 15.09 10.62 Chip1 T1D_2 T1D TGCAGCGCGGGGACAGGGGGAACTAATGAAAAACTGTTTTTT CSAGTGGTNEKLFF TRBV29-1*01 TRBJ1-4*01 2.0 138.0 _CSAGTGGTNEKLFF 2 3076 EBV-BLMF1 EBV 0.67 2531 NEG 171 2905 12 EBV BLMF1 GLCTLVAML effector T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*02:01 B2M MHCI -1636 chip0420_74954 11.33 11.78 Chip1 T1D_1 T1D TGTGCCACCCAACAGGGGAGGGACAGTCAGCCCCAGCATTTT CATQQGRDSQPQHF TRBV28*01 TRBJ1-5*01 21.0 915.0 _CATQQGRDSQPQHF 52 2375 EBV-BLMF1 EBV 1.0 2531 NEG 173 2202 9 EBV BLMF1 GLCTLVAML effector memory T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*02:01 B2M MHCI -1637 chip0420_447817 8.01 11.5 Chip1 T1D_2 T1D _ 6746 2839 EBV-BRLF1 EBV 0.77 1264 EBV-BRLF1 160 2679 7 EBV BRLF1 YVLDHLIVV transitional T cells between effector and memory populations PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*02:01 B2M MHCI -1638 chip0420_158045 11.09 12.63 Chip1 T1D_1 T1D TGTGCCAGCAGCCCAGTTAGCGGGTCAACCTACGAGCAGTACTTC CASSPVSGSTYEQYF TRBV3-1*01 TRBJ2-7*01 16.0 647.0 _CASSPVSGSTYEQYF 80 2863 EBV-BLMF1 EBV 1.0 2531 NEG 162 2701 11 EBV BLMF1 GLCTLVAML effector T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*02:01 B2M MHCI -1639 chip0420_24492 15.51 8.83 Chip1 T1D_2 T1D TGTGCCAGCAGCTCGGGACTAGTCGCCCCCGGGGAGCTGTTTTTT CASSSGLVAPGELFF TRBV2*01 TRBJ2-2*01 18.0 1411.0 _CASSSGLVAPGELFF 133 3154 EBV-BLMF1 EBV 0.75 2531 NEG 171 2983 12 EBV BLMF1 GLCTLVAML effector T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*02:01 B2M MHCI -1640 chip0420_588926 5.56 8.57 Chip1 T1D_1 T1D TGTGCCAGCAGCCCGGGGGACGCCCGTGGCGAGCAGTACTTC CASSPGDARGEQYF TRBV5-6*01 TRBJ2-7*01 15.0 720.0 _CASSPGDARGEQYF 12 7661 EBV-LMP1-1 EBV 0.82 237 EBV-LMP1-1 183 7478 6 EBV LMP1 YLLEMLWRL central memory T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*02:01 B2M MHCI -1641 chip0420_507047 -2.4 8.83 Chip1 T1D_2 T1D TGTGCCTTCCACTCTAGCAACACAGGCAAACTAATCTTT CAFHSSNTGKLIF TRAV12-2*01 TRAJ37*01 11.0 848.0 CAFHSSNTGKLIF_ 1 5158 MART1-ALA MART1 0.45 269 NEG 166 4992 2 HomoSapiens MART1 ALAGIGILTV Naive T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*02:01 B2M MHCI -1642 chip0420_124465 6.1 12.76 Chip1 T1D_1 T1D TGTGCCAGTAGTGTCAGGGCAGGAGAGACCCAGTACTTC CASSVRAGETQYF TRBV19*01 TRBJ2-5*01 22.0 1363.0 _CASSVRAGETQYF 23 3838 M1 FLU 0.92 1250 M1 166 3672 7 InfluenzaA M1 GILGFVFTL transitional T cells between effector and memory populations PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*02:01 B2M MHCI -1643 chip0420_271374 14.25 8.36 Chip1 T1D_2 T1D TGCAGCGTTGGGGGCAGCTTCTATGGCTACACCTTC CSVGGSFYGYTF TRBV29-1*01 TRBJ1-2*01 129.0 11797.0 _CSVGGSFYGYTF 42 2104 EBV-BLMF1 EBV 0.44 2531 NEG 197 1907 10 EBV BLMF1 GLCTLVAML effector memory T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*02:01 B2M MHCI -1644 chip0420_625215 -0.94 9.71 Chip1 T1D_1 T1D _ 6746 4891 CVB3-P3A CVB 0.83 77 CVB3-P3A 163 4728 3 CoxsackievirusB P3A GIIYIIYKL Naive T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*02:01 B2M MHCI -1645 chip0420_261831 9.71 10.46 Chip1 T1D_2 T1D TGTGCCAGCAGTTACATGTCCGGCGAAGCTTTCTTT CASSYMSGEAFF TRBV6-2*01,TRBV6-3*01 TRBJ1-1*01 16.0 557.0 _CASSYMSGEAFF 8 3187 EBV-BRLF1 EBV 0.98 1264 EBV-BRLF1 163 3024 9 EBV BRLF1 YVLDHLIVV effector memory T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*02:01 B2M MHCI -1646 chip0420_2078 12.25 10.76 Chip1 T1D_2 T1D _ 6746 2857 EBV-BLMF1 EBV 1.0 2531 NEG 167 2690 9 EBV BLMF1 GLCTLVAML effector memory T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*02:01 B2M MHCI -1647 chip0420_833112 11.66 13.19 Chip1 T1D_1 T1D _ 6746 1722 EBV-BLMF1 EBV 0.71 2531 NEG 149 1573 11 EBV BLMF1 GLCTLVAML effector T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*02:01 B2M MHCI -1648 chip0420_158738 13.59 13.07 Chip1 T1D_2 T1D TGTGCCTTAGGCGGACTGACCTTT CALGGLTF TRAV8-1*01 TRAJ22*01 1.0 98.0 TGTGCCAGCCCCCCCTCGACTAGCGGGAGTGGGGAGACCAAGTACTTC CASPPSTSGSGETKYF TRBV3-1*01 TRBJ2-5*01 4.0 162.0 CALGGLTF_CASPPSTSGSGETKYF 1 1543 EBV-BRLF1 EBV 0.75 1264 NEG 165 1378 12 EBV BRLF1 YVLDHLIVV effector T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*02:01 B2M MHCI -1649 chip0420_292814 10.73 11.79 Chip1 T1D_2 T1D TGTGCCTGGAGACCACTATTAGGAGGGGCCTCTGAAGCTTTCTTT CAWRPLLGGASEAFF TRBV30*01 TRBJ1-1*01 42.0 1670.0 _CAWRPLLGGASEAFF 1 2544 EBV-BRLF1 EBV 0.91 1264 EBV-BRLF1 154 2390 9 EBV BRLF1 YVLDHLIVV effector memory T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*02:01 B2M MHCI -1650 chip0420_575545 -1.02 7.61 Chip1 T1D_1 T1D TGTGCCAGCAGCGTAGGGGTAACTGCGACTGAAGCTTTCTTT CASSVGVTATEAFF TRBV9*01 TRBJ1-1*01 47.0 1934.0 _CASSVGVTATEAFF 1 8503 PGT-178 PGT 0.55 1480 PGT-178 155 8348 3 HomoSapiens PGT LLAGIGTVPI Naive T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*02:01 B2M MHCI -1651 chip0420_143902 10.6 10.92 Chip1 T1D_2 T1D TGCAGCGTTGACCAAAGGACAGGGCAAAAGAAGAACTATGGCTACACCTTC CSVDQRTGQKKNYGYTF TRBV29-1*01 TRBJ1-2*01 39.0 1882.0 _CSVDQRTGQKKNYGYTF 40 3118 EBV-BLMF1 EBV 0.88 2531 NEG 162 2956 9 EBV BLMF1 GLCTLVAML effector memory T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*02:01 B2M MHCI -1652 chip0420_122996 10.53 8.43 Chip1 T1D_1 T1D TGTGCTGTGGTCTCAAATTCCGGGTATGCACTCAACTTC CAVVSNSGYALNF TRAV21*01 TRAJ41*01 34.0 2033.0 CAVVSNSGYALNF_ 4 4749 EBV-BLMF1 EBV 1.0 2531 NEG 163 4586 10 EBV BLMF1 GLCTLVAML effector memory T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*02:01 B2M MHCI -1653 chip0420_440639 6.18 13.95 Chip1 T1D_1 T1D _ 6746 4273 M1 FLU 0.9 1250 M1 155 4118 7 InfluenzaA M1 GILGFVFTL transitional T cells between effector and memory populations PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*02:01 B2M MHCI -1654 chip0420_845487 12.08 8.86 Chip1 T1D_2 T1D TGCAGCGTGGGGACAGGGGGAACTAATGAAAAACTGTCTTTT CSVGTGGTNEKLSF TRBV29-1*01 TRBJ1-4*01 67.0 3126.0 _CSVGTGGTNEKLSF 3 2425 EBV-BLMF1 EBV 0.44 2531 NEG 175 2250 10 EBV BLMF1 GLCTLVAML effector memory T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*02:01 B2M MHCI -1655 chip0420_584391 5.16 11.28 Chip1 T1D_2 T1D _ 6746 3607 GP160-311-320 HIV 0.73 109 NEG 143 3464 6 HIV-1 GP160 RGPGRAFVTI central memory T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*02:01 B2M MHCI -1656 chip0420_557965 10.87 6.93 Chip1 T1D_2 T1D _ 6746 4031 EBV-BLMF1 EBV 0.78 2531 NEG 167 3864 10 EBV BLMF1 GLCTLVAML effector memory T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*02:01 B2M MHCI -1657 chip0420_56616 12.93 10.13 Chip1 T1D_1 T1D TGTGCCAGCAGCCAAAGCCCGGGTGGTACGCAGTATTTT CASSQSPGGTQYF TRBV14*01 TRBJ2-3*01 3.0 131.0 _CASSQSPGGTQYF 94 2757 EBV-BLMF1 EBV 0.8 2531 NEG 150 2607 8 EBV BLMF1 GLCTLVAML effector memory T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*02:01 B2M MHCI -1658 chip0420_734483 -0.31 9.17 Chip1 T1D_1 T1D _ 6746 5568 ZNT8-115-123 ZNT8 0.49 74 ZNT8-115-123 178 5390 3 HomoSapiens ZNT8 LLSLFSLWL Naive T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*02:01 B2M MHCI -1659 chip0420_673904 -0.89 6.83 Chip1 T1D_1 T1D TGTGCTTATAGGAGCGTTAATAACAATGACATGCGCTTT CAYRSVNNNDMRF TRAV38-2/DV8*01 TRAJ43*01 14.0 1069.0 TGTGCCAGCAGTGACTTTGGCCTTCTGGGGACTGAAGCTTTCTTT CASSDFGLLGTEAFF TRBV6-1*01 TRBJ1-1*01 28.0 1169.0 CAYRSVNNNDMRF_CASSDFGLLGTEAFF 1 6509 M1 FLU 0.77 1250 M1 167 6342 3 InfluenzaA M1 GILGFVFTL Naive T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*02:01 B2M MHCI -1660 chip0420_205370 12.28 10.93 Chip1 T1D_2 T1D TGTGCCAGCAGGCCTTTGACAGGGGGGGGAACTGAAGCTTTCTTT CASRPLTGGGTEAFF TRAV9-1*01 TRAJ40*01 1.0 11.0 CASRPLTGGGTEAFF_ 1 2392 EBV-BRLF1 EBV 0.95 1264 EBV-BRLF1 176 2216 9 EBV BRLF1 YVLDHLIVV effector memory T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*02:01 B2M MHCI -1661 chip0420_204906 10.75 11.57 Chip1 T1D_2 T1D TGTGTGGTGAGTACTCTAGCAACACAGGCAAACTCATCTTT CVVSTLgc?NTGKLIF TRAV10*01 TRAJ37*01 40.0 2509.0 CVVSTLgc?NTGKLIF_ 1 2447 EBV-BLMF1 EBV 0.6 2531 NEG 161 2286 9 EBV BLMF1 GLCTLVAML effector memory T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*02:01 B2M MHCI -1662 chip0420_146529 10.98 10.14 Chip1 T1D_1 T1D TGCATCCTGCGACGCTATGGCGGCAGCCAAGGAAATCTCATCTTT CILRRYGGSQGNLIF TRAV26-2*01 TRAJ42*01 3.0 36.0 CILRRYGGSQGNLIF_ 9 2956 EBV-BLMF1 EBV 0.86 2531 EBV-BLMF1 167 2789 9 EBV BLMF1 GLCTLVAML effector memory T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*02:01 B2M MHCI -1663 chip0420_411484 6.13 12.93 Chip1 T1D_1 T1D TGTGCCAGTAGTATGCGGTCCGCCTACGAGCAGTACTTC CASSMRSAYEQYF TRBV19*01 TRBJ2-7*01 7.0 336.0 _CASSMRSAYEQYF 6 4363 M1 FLU 0.66 1250 M1 166 4197 7 InfluenzaA M1 GILGFVFTL transitional T cells between effector and memory populations PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*02:01 B2M MHCI -1664 chip0420_408911 10.89 10.34 Chip1 T1D_1 T1D _ 6746 4433 EBV-BLMF1 EBV 0.63 2531 NEG 173 4260 9 EBV BLMF1 GLCTLVAML effector memory T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*02:01 B2M MHCI -1665 chip0420_583302 6.63 12.74 Chip1 T1D_1 T1D _ 6746 3946 M1 FLU 0.83 1250 M1 181 3765 7 InfluenzaA M1 GILGFVFTL transitional T cells between effector and memory populations PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*02:01 B2M MHCI -1666 chip0420_709435 -3.73 9.04 Chip1 T1D_1 T1D _ 6746 5881 GP160-311-320 HIV 0.8 109 NEG 149 5732 2 HIV-1 GP160 RGPGRAFVTI Naive T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*02:01 B2M MHCI -1667 chip0420_452770 12.45 8.11 Chip1 T1D_2 T1D TGTGCCGTGAAGGACACCGACAAGCTCATCTTT CAVKDTDKLIF TRAV12-2*01 TRAJ34*01 4.0 302.0 TGTGCCTGGAGTGGGACTAGCGGTTCCTACAATGAGCAGTTCTTC CAWSGTSGSYNEQFF TRBV30*01 TRBJ2-1*01 9.0 421.0 CAVKDTDKLIF_CAWSGTSGSYNEQFF 1 2777 EBV-BRLF1 EBV 0.89 1264 EBV-BRLF1 178 2599 10 EBV BRLF1 YVLDHLIVV effector memory T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*02:01 B2M MHCI -1668 chip0420_659689 10.61 9.61 Chip1 T1D_1 T1D TGCAGCGTCGGCTCCAGGGGAACTAATGAAAAACTGTTTTTT CSVGSRGTNEKLFF TRBV29-1*01 TRBJ1-4*01 41.0 1725.0 _CSVGSRGTNEKLFF 283 3148 EBV-BLMF1 EBV 0.75 2531 NEG 166 2982 9 EBV BLMF1 GLCTLVAML effector memory T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*02:01 B2M MHCI -1669 chip0420_484860 10.62 11.19 Chip1 T1D_1 T1D TGCGGCCCCGAGGAACCTAACGACTACAAGCTCAGCTTT CGPEEPNDYKLSF TRAV30*01 TRAJ20*01 30.0 1610.0 TGTGCCAGCAGCACGGGACAGCTATCGAACACCGGGGAGCTGTTTTTT CASSTGQLSNTGELFF TRBV9*01 TRBJ2-2*01 3.0 70.0 CGPEEPNDYKLSF_CASSTGQLSNTGELFF 14 4039 EBV-BLMF1 EBV 0.62 2531 NEG 159 3880 9 EBV BLMF1 GLCTLVAML effector memory T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*02:01 B2M MHCI -1670 chip0420_313692 5.98 12.78 Chip1 T1D_1 T1D _ 6746 5281 M1 FLU 1.0 1250 M1 180 5101 7 InfluenzaA M1 GILGFVFTL transitional T cells between effector and memory populations PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*02:01 B2M MHCI -1671 chip0420_254233 14.4 10.98 Chip1 T1D_2 T1D TGTGCCGTGAACCTATACAGCACCCTCACCTTT CAVNLYSTLTF TRAV8-1*01 TRAJ11*01 10.0 793.0 CAVNLYSTLTF_ 3 2424 EBV-BRLF1 EBV 0.98 1264 EBV-BRLF1 175 2249 12 EBV BRLF1 YVLDHLIVV effector T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*02:01 B2M MHCI -1672 chip0420_702846 -2.68 10.68 Chip1 T1D_1 T1D TGTGTGGTTTTCTCTAGCAACACAGGCAAACTAATCTTT CVVFSSNTGKLIF TRAV12-1*01 TRAJ37*01 29.0 2026.0 TGTGCCAGCAGTGAAGATGGTTCCGGAATCTATAATTCACCCCTCCACTTT CASSEDGSGIYNSPLHF TRBV2*01 TRBJ1-6*01 82.0 3059.0 CVVFSSNTGKLIF_CASSEDGSGIYNSPLHF 1 4717 MART1-A27L MART1 0.44 16 MART1-A27L 143 4574 3 HomoSapiens MART1 ELAGIGILTV Naive T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*02:01 B2M MHCI -1673 chip0420_546114 5.88 13.25 Chip1 T1D_1 T1D TGTGCTGTGAGTTTCGGTAACCAGTTCTATTTT CAVSFGNQFYF TRAV21*01 TRAJ49*01 7.0 602.0 CAVSFGNQFYF_ 1 4315 M1 FLU 0.58 1250 M1 164 4151 7 InfluenzaA M1 GILGFVFTL transitional T cells between effector and memory populations PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*02:01 B2M MHCI -1674 chip0420_662379 -2.71 14.43 Chip1 T1D_1 T1D TGTGTGGTGAGCCCGTTTTCTGGTGGCTCCCCTCCGCTGCTTTTT CVVSPFSGGSPPLLF TRAV12-1*01 TRAJ4*01 48.0 2000.0 TGCAGCGTTACCGCATGGGGGCAGCGGGGCTTTGTGGAGCAGTTCTTC CSVTAWGQRGFVEQFF TRBV29-1*01 TRBJ2-1*01 69.0 5601.0 CVVSPFSGGSPPLLF_CSVTAWGQRGFVEQFF 1 3355 EBV-LMP2A EBV 0.5 700 NEG 173 3182 1 EBV LMP2A CLGGLLTMV Naive T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*02:01 B2M MHCI -1675 chip0420_480362 7.11 14.05 Chip1 T1D_1 T1D TGTGCCGTGCAGCCCGGTGGCTACAATAAGCTGATTTTT CAVQPGGYNKLIF TRAV41*01,TRAV12-2*01 TRAJ4*01 2.0 166.0 TGTGCCAGTAGTGTCAGGGCAGGAGAGACCCAGTACTTC CASSVRAGETQYF TRBV19*01 TRBJ2-5*01 1.0 57.0 CAVQPGGYNKLIF_CASSVRAGETQYF 1 3485 M1 FLU 0.85 1250 M1 164 3321 7 InfluenzaA M1 GILGFVFTL transitional T cells between effector and memory populations PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*02:01 B2M MHCI -1676 chip0420_135897 5.93 11.35 Chip1 T1D_2 T1D TGCGCCAGCAGCTTGGAGGGTCAGGCCAGCTCCTACGAGCAGTACTTC CASSLEGQASSYEQYF TRBV5-1*01 TRBJ2-7*01 8.0 433.0 _CASSLEGQASSYEQYF 9 3478 EBV-LMP2A EBV 1.0 700 EBV-LMP2A 159 3319 7 EBV LMP2A CLGGLLTMV transitional T cells between effector and memory populations PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*02:01 B2M MHCI -1677 chip0420_342897 15.13 8.82 Chip1 T1D_2 T1D TGTGTGGTGAACGGCAGGGATAGCAGCTATAAATTGATCTTC CVVNGRDSSYKLIF TRAV12-1*01 TRAJ12*01 35.0 2016.0 TGTGCCAGCAGCTCGGGACTAGTCGCCCCCGGGGAGCTGTTTTTT CASSSGLVAPGELFF TRBV2*01 TRBJ2-2*01 19.0 1172.0 CVVNGRDSSYKLIF_CASSSGLVAPGELFF 98 3321 EBV-BLMF1 EBV 0.53 2531 NEG 167 3154 12 EBV BLMF1 GLCTLVAML effector T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*02:01 B2M MHCI -1678 chip0420_148027 9.92 7.37 Chip1 T1D_2 T1D TGCGCCAGCAGAGCGGGAGCCGGGGATACGCAGTATTTT CASRAGAGDTQYF TRBV10-2*01 TRBJ2-3*01 55.0 4258.0 _CASRAGAGDTQYF 59 4042 EBV-BLMF1 EBV 0.88 2531 NEG 161 3881 10 EBV BLMF1 GLCTLVAML effector memory T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*02:01 B2M MHCI -1679 chip0420_705023 13.97 8.41 Chip1 T1D_1 T1D TGTGCCAGCAGTGCCGGGACAGTTGCACCCGGGGAGCTGTTTTTT CASSAGTVAPGELFF TRBV2*01 TRBJ2-2*01 50.0 2723.0 _CASSAGTVAPGELFF 21 2327 EBV-BLMF1 EBV 0.57 2531 NEG 177 2150 12 EBV BLMF1 GLCTLVAML effector T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*02:01 B2M MHCI -1680 chip0420_151170 9.83 6.82 Chip1 T1D_2 T1D _ 6746 8432 EBV-LMP2A EBV 0.89 700 NEG 169 8263 10 EBV LMP2A CLGGLLTMV effector memory T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*02:01 B2M MHCI -1681 chip0420_390330 6.33 12.68 Chip1 T1D_1 T1D _ 6746 3346 M1 FLU 0.73 1250 NEG 175 3171 7 InfluenzaA M1 GILGFVFTL transitional T cells between effector and memory populations PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*02:01 B2M MHCI -1682 chip0420_274987 10.41 9.02 Chip1 T1D_2 T1D TGCAGCGTGGGGACAGGGGGAACTAATGAAAAACTGTTTTTT CSVGTGGTNEKLFF TRBV29-1*01 TRBJ1-4*01 35.0 1807.0 _CSVGTGGTNEKLFF 638 3345 EBV-BLMF1 EBV 0.57 2531 NEG 188 3157 10 EBV BLMF1 GLCTLVAML effector memory T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*02:01 B2M MHCI -1683 chip0420_878719 4.9 10.77 Chip1 T1D_1 T1D _ 6746 4193 M1 FLU 0.89 1250 NEG 164 4029 6 InfluenzaA M1 GILGFVFTL central memory T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*02:01 B2M MHCI -1684 chip0420_751320 -3.18 11.24 Chip1 T1D_2 T1D TGCAGCGTAACAGGTTACGGGGCCAACGTCCTGACTTTC CSVTGYGANVLTF TRBV29-1*01 TRBJ2-6*01 48.0 3570.0 _CSVTGYGANVLTF 1 3370 ZNT8-16-24 ZNT8 0.46 39 NEG 149 3221 1 HomoSapiens ZNT8 KMYAFTLES Naive T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*02:01 B2M MHCI -1685 chip0420_327384 7.81 9.64 Chip1 T1D_1 T1D TGCAGCGTCGGCTCCAGGGGAACTAATGAAAAACTGTTTTTT CSVGSRGTNEKLFF TRBV29-1*01 TRBJ1-4*01 182.0 9213.0 _CSVGSRGTNEKLFF 283 4745 EBV-BLMF1 EBV 0.75 2531 NEG 183 4562 8 EBV BLMF1 GLCTLVAML effector memory T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*02:01 B2M MHCI -1686 chip0420_655828 12.14 7.74 Chip1 T1D_2 T1D TGTGCCTTAGGAGGACTGACCTTT CALGGLTF TRAV8-1*01 TRAJ22*01 5.0 283.0 TGTGCCAGCAGCCCCTCGACTAGCGAGAGTGGAGAGACCCAGTACTTC CASSPSTSESGETQYF TRBV3-1*01 TRBJ2-5*01 40.0 2052.0 CALGGLTF_CASSPSTSESGETQYF 1 2890 EBV-BRLF1 EBV 0.79 1264 EBV-BRLF1 200 2690 10 EBV BRLF1 YVLDHLIVV effector memory T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*02:01 B2M MHCI -1687 chip0420_96253 5.32 12.26 Chip1 T1D_1 T1D TGTGCCAGTAGTTTAAGGTCCTCAGATACGCAGTATTTT CASSLRSSDTQYF TRBV19*01 TRBJ2-3*01 25.0 1058.0 _CASSLRSSDTQYF 1 4644 M1 FLU 0.9 1250 M1 173 4471 6 InfluenzaA M1 GILGFVFTL central memory T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*02:01 B2M MHCI -1688 chip0420_70471 12.34 9.41 Chip1 T1D_1 T1D TGCGGCACAGCGGAACCTAACGACTACAAGCTCAGCTTT CGTAEPNDYKLSF TRAV30*01 TRAJ20*01 3.0 52.0 TGTGCCAGCAGCACGGGACAGCTATCGAACACCGGGGAGCTGTTTTTT CASSTGQLSNTGELFF TRBV9*01 TRBJ2-2*01 42.0 1644.0 CGTAEPNDYKLSF_CASSTGQLSNTGELFF 2 2693 EBV-BLMF1 EBV 0.7 2531 NEG 143 2550 10 EBV BLMF1 GLCTLVAML effector memory T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*02:01 B2M MHCI -1689 chip0420_191479 6.91 11.23 Chip1 T1D_1 T1D TGTGCCAGTAGTGTCAGGGCAGGAGAGACCCAGTACTTC CASSVRAGETQYF TRBV19*01 TRBJ2-5*01 13.0 467.0 _CASSVRAGETQYF 23 4663 M1 FLU 0.89 1250 M1 161 4502 7 InfluenzaA M1 GILGFVFTL transitional T cells between effector and memory populations PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*02:01 B2M MHCI -1690 chip0420_883411 16.3 10.15 Chip1 T1D_1 T1D TGTACAGAGGCGGCCAACCAGGCAGGAACTGCTCTGATCTTT CTEAANQAGTALIF TRAV5*01 TRAJ15*01 12.0 738.0 CTEAANQAGTALIF_ 1 2252 EBV-BLMF1 EBV 0.67 2531 NEG 163 2089 12 EBV BLMF1 GLCTLVAML effector T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*02:01 B2M MHCI -1691 chip0420_411531 8.96 9.0 Chip1 T1D_1 T1D _ 6746 5615 EBV-BRLF1 EBV 0.93 1264 EBV-BRLF1 152 5463 8 EBV BRLF1 YVLDHLIVV effector memory T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*02:01 B2M MHCI -1692 chip0420_148245 14.65 10.27 Chip1 T1D_1 T1D TGTGCCGTGGACCCATGGGGTAACCAGTTCTATTTT CAVDPWGNQFYF TRAV39*01 TRAJ49*01 26.0 2040.0 TGTGCCACCCAACAGGGGAGGGACAGTCAGCCCCAGCATTTT CATQQGRDSQPQHF TRBV28*01 TRBJ1-5*01 12.0 495.0 CAVDPWGNQFYF_CATQQGRDSQPQHF 16 4140 EBV-BLMF1 EBV 1.0 2531 NEG 169 3971 12 EBV BLMF1 GLCTLVAML effector T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*02:01 B2M MHCI -1693 chip0420_837225 7.57 14.13 Chip1 T1D_1 T1D TGTGCCAGTAGTATAAATGGGGGCCGGCGGGATGGCTACACCTTC CASSINGGRRDGYTF TRBV19*01 TRBJ1-2*01 13.0 515.0 _CASSINGGRRDGYTF 32 2475 M1 FLU 0.82 1250 NEG 156 2319 7 InfluenzaA M1 GILGFVFTL transitional T cells between effector and memory populations PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*02:01 B2M MHCI -1694 chip0420_627900 11.08 7.58 Chip1 T1D_2 T1D TGTGCCGTGAAGGACACCGACAAGCTCATCTTT CAVKDTDKLIF TRAV8-1*01 TRAJ34*01 6.0 558.0 CAVKDTDKLIF_ 56 3112 EBV-BRLF1 EBV 0.84 1264 EBV-BRLF1 187 2925 10 EBV BRLF1 YVLDHLIVV effector memory T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*02:01 B2M MHCI -1695 chip0420_452539 6.75 13.4 Chip1 T1D_1 T1D TGTGCTTTCATGAAGGGCGCTGGTGGTACTAGCTATGGCAAGCTGACATTT CAFMKGAGGTSYGKLTF TRAV38-1*01 TRAJ52*01 67.0 2071.0 TGTGCCAGTAGTATGGGCAGCTATGGCTACACCTTC CASSMGSYGYTF TRBV19*01 TRBJ1-2*01 11.0 709.0 CAFMKGAGGTSYGKLTF_CASSMGSYGYTF 1 4401 M1 FLU 0.91 1250 M1 162 4239 7 InfluenzaA M1 GILGFVFTL transitional T cells between effector and memory populations PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*02:01 B2M MHCI -1696 chip0420_368073 -4.39 8.59 Chip1 T1D_1 T1D TGTGCAGAGAGTGAACAGAGATGCCAAGATCATCTTT CAESEQ??aDAKIIF TRAV13-2*01 TRAJ30*01 31.0 2156.0 TGTGCCAGCAGCTTGGAAACGCGTGACGAGCAGTACTTC CASSLETRDEQYF TRBV7-8*01 TRBJ2-7*01 9.0 587.0 CAESEQ??aDAKIIF_CASSLETRDEQYF 1 6039 PA-46-54 FLU 0.86 18 NEG 152 5887 2 InfluenzaA PA FMYSDFHFI Naive T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*02:01 B2M MHCI -1697 chip0420_721293 10.56 9.1 Chip1 T1D_1 T1D _ 6746 4056 EBV-BLMF1 EBV 0.81 2531 EBV-BLMF1 167 3889 10 EBV BLMF1 GLCTLVAML effector memory T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*02:01 B2M MHCI -1698 chip0420_445599 13.34 7.47 Chip1 T1D_2 T1D TGCAGCGTGGGGACAGGGGGAACTAATGAAAAACTGTTTTTT CSVGTGGTNEKLFF TRBV29-1*01 TRBJ1-4*01 49.0 1854.0 _CSVGTGGTNEKLFF 638 3913 EBV-BLMF1 EBV 0.6 2531 NEG 142 3771 10 EBV BLMF1 GLCTLVAML effector memory T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*02:01 B2M MHCI -1699 chip0420_687828 6.12 12.54 Chip1 T1D_1 T1D TGTGCTACGGACTTGGGGGGCGGAAGCCAAGGAAATCTCATCTTT CATDLGGGSQGNLIF TRAV17*01 TRAJ42*01 57.0 1991.0 CATDLGGGSQGNLIF_ 1 4190 M1 FLU 0.48 1250 M1 157 4033 7 InfluenzaA M1 GILGFVFTL transitional T cells between effector and memory populations PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*02:01 B2M MHCI -1700 chip0420_625969 13.04 8.26 Chip1 T1D_1 T1D TGCAGCACCCAAGAGGGGGGGTATGGCTACACCTTC CSTQEGGYGYTF TRBV29-1*01 TRBJ1-2*01 35.0 1980.0 _CSTQEGGYGYTF 4 3865 EBV-BLMF1 EBV 0.52 2531 NEG 182 3683 10 EBV BLMF1 GLCTLVAML effector memory T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*02:01 B2M MHCI -1701 chip0420_373084 13.86 11.22 Chip1 T1D_1 T1D TGTGCCAGCAGTGAAGGGCGAGTCTCTCCGGGCGAAACTTTCTTT CASSEGRVSPGETFF TRBV2*01 TRBJ1-1*01 33.0 1694.0 _CASSEGRVSPGETFF 1 3647 EBV-BLMF1 EBV 0.56 2531 NEG 149 3498 12 EBV BLMF1 GLCTLVAML effector T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*02:01 B2M MHCI -1702 chip0420_437436 9.47 9.8 Chip1 T1D_2 T1D TGTGCTTCCCTAACCCCGGGGGCTTCCAAGATAATCTTT CASLTPGASKIIF TRAV8-6*01 TRAJ3*01 8.0 746.0 TGTGCCAGCAGCTCGGGACTAGTCGCCCCCGGGGAGCTGTTTTTT CASSSGLVAPGELFF TRBV2*01 TRBJ2-2*01 73.0 5684.0 CASLTPGASKIIF_CASSSGLVAPGELFF 38 3587 EBV-BLMF1 EBV 0.75 2531 NEG 168 3419 8 EBV BLMF1 GLCTLVAML effector memory T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*02:01 B2M MHCI -1703 chip0420_707835 9.74 7.55 Chip1 T1D_1 T1D _ 6746 3223 EBV-BLMF1 EBV 1.0 2531 NEG 155 3068 8 EBV BLMF1 GLCTLVAML effector memory T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*02:01 B2M MHCI -1704 chip0420_624948 -3.16 8.39 Chip1 T1D_1 T1D TGTGTGGTGAACCCCGGGGGGGGGCAACTGACCTTT CVVNPGGGQLTF TRAV12-1*01 TRAJ22*01 5.0 144.0 CVVNPGGGQLTF_ 1 6984 MART1-ALA MART1 0.59 269 MART1-ALA 138 6846 2 HomoSapiens MART1 ALAGIGILTV Naive T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*02:01 B2M MHCI -1705 chip0420_561161 6.83 13.82 Chip1 T1D_1 T1D TGTGCCAGTAGCCCCAGGAGCACAGATACGCAGTATTTT CASSPRSTDTQYF TRBV19*01 TRBJ2-3*01 12.0 725.0 _CASSPRSTDTQYF 1 4257 M1 FLU 0.45 1250 M1 154 4103 7 InfluenzaA M1 GILGFVFTL transitional T cells between effector and memory populations PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*02:01 B2M MHCI -1706 chip0420_554699 10.09 10.91 Chip1 T1D_1 T1D TGCAGCGTCGGCTCCAGGGGAACTAATGAAAAACTGTTTTTT CSVGSRGTNEKLFF TRBV29-1*01 TRBJ1-4*01 115.0 6542.0 _CSVGSRGTNEKLFF 283 5300 EBV-BLMF1 EBV 0.8 2531 NEG 158 5142 9 EBV BLMF1 GLCTLVAML effector memory T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*02:01 B2M MHCI -1707 chip0420_108311 5.73 13.51 Chip1 T1D_1 T1D TGTGCCAGTAGTATTTATGGAGGGAGCGGTGAAGCTTTCTTT CASSIYGGSGEAFF TRBV19*01 TRBJ1-1*01 29.0 1259.0 _CASSIYGGSGEAFF 4 3833 M1 FLU 0.58 1250 NEG 200 3633 7 InfluenzaA M1 GILGFVFTL transitional T cells between effector and memory populations PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*02:01 B2M MHCI -1708 chip0420_573560 8.97 8.52 Chip1 T1D_1 T1D TGTGCCGTGGACCCATGGGGTAACCAGTTCTATTTT CAVDPWGNQFYF TRAV39*01 TRAJ49*01 29.0 2035.0 CAVDPWGNQFYF_ 2 7957 EBV-BLMF1 EBV 0.63 2531 EBV-BLMF1 152 7805 8 EBV BLMF1 GLCTLVAML effector memory T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*02:01 B2M MHCI -1709 chip0420_513948 13.23 10.78 Chip1 T1D_2 T1D TGTGCCAGCAGCTCGGGACTAGTCGCCCCCGGGGAGCTGTTTTTT CASSSGLVAPGELFF TRBV2*01 TRBJ2-2*01 65.0 2941.0 _CASSSGLVAPGELFF 133 3630 EBV-BLMF1 EBV 0.7 2531 NEG 173 3457 9 EBV BLMF1 GLCTLVAML effector memory T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*02:01 B2M MHCI -1710 chip0420_299814 9.88 8.83 Chip1 T1D_2 T1D TGCAGCGTGGGGACAGGGGGAACTAATGAAAAACTGTTTTTT CSVGTGGTNEKLFF TRBV29-1*01 TRBJ1-4*01 117.0 5102.0 _CSVGTGGTNEKLFF 638 3647 EBV-BLMF1 EBV 0.6 2531 NEG 171 3476 8 EBV BLMF1 GLCTLVAML effector memory T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*02:01 B2M MHCI -1711 chip0420_125615 7.11 13.17 Chip1 healthy_1 healthy _ 6746 3086 M1 FLU 0.81 1250 NEG 174 2912 6 InfluenzaA M1 GILGFVFTL central memory T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*02:01 B2M MHCI -1712 chip0420_854029 11.06 10.35 Chip1 T1D_1 T1D TGTGTGGTGAACGGGGGGGATAGCAGCTATAAATTGATCTTC CVVNGGDSSYKLIF TRAV12-1*01 TRAJ12*01 35.0 2074.0 TGTGCCAGCAGTTCGGGACAGGTACTTCCCAATGAGCAGTTCTTC CASSSGQVLPNEQFF TRBV2*01 TRBJ2-1*01 35.0 2292.0 CVVNGGDSSYKLIF_CASSSGQVLPNEQFF 31 4638 EBV-BLMF1 EBV 0.6 2531 NEG 176 4462 9 EBV BLMF1 GLCTLVAML effector memory T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*02:01 B2M MHCI -1713 chip0420_59068 8.69 9.99 Chip1 T1D_2 T1D TGCAGCGTTGGGGGCAGCTTCTATGGCTACACCTTC CSVGGSFYGYTF TRBV29-1*01 TRBJ1-2*01 71.0 6087.0 _CSVGGSFYGYTF 42 3362 EBV-BLMF1 EBV 0.92 2531 NEG 169 3193 8 EBV BLMF1 GLCTLVAML effector memory T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*02:01 B2M MHCI -1714 chip0420_821381 12.17 9.11 Chip1 T1D_2 T1D _ 6746 2653 EBV-BLMF1 EBV 0.64 2531 NEG 179 2474 10 EBV BLMF1 GLCTLVAML effector memory T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*02:01 B2M MHCI -1715 chip0420_249853 12.73 7.1 Chip1 T1D_1 T1D TGTGCTGTGTGTGGTTTGGGGTTGGCTTGCGTTTG CAVCGtt?GVGLRL TRAV8-4*01 TRAJ43*01 20.0 2006.0 TGCAGCGTGCCTTGACAGGGGAGGTTGAGCAATCAGCCCCAGCATTTT CSVP*QGRLSNQPQHF TRBV29-1*01 TRBJ1-5*01 37.0 1258.0 CAVCGtt?GVGLRL_CSVP*QGRLSNQPQHF 1 2565 EBV-BLMF1 EBV 0.71 2531 NEG 174 2391 10 EBV BLMF1 GLCTLVAML effector memory T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*02:01 B2M MHCI -1716 chip0420_117934 10.9 10.66 Chip1 T1D_1 T1D TGTGCCGTGGACCCATGGGGTAACCAGTTCTATTTT CAVDPWGNQFYF TRAV39*01 TRAJ49*01 25.0 2035.0 TGTGCCACCCAACAGGGGAGGGACAGTCAGCCCCAGCATTTT CATQQGRDSQPQHF TRBV28*01 TRBJ1-5*01 37.0 1720.0 CAVDPWGNQFYF_CATQQGRDSQPQHF 16 5903 EBV-BLMF1 EBV 0.85 2531 NEG 165 5738 9 EBV BLMF1 GLCTLVAML effector memory T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*02:01 B2M MHCI -1717 chip0420_652962 10.19 7.1 Chip1 T1D_1 T1D _ 6746 7635 EBV-BRLF1 EBV 0.94 1264 EBV-BRLF1 194 7441 10 EBV BRLF1 YVLDHLIVV effector memory T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*02:01 B2M MHCI -1718 chip0420_499184 -1.46 8.9 Chip1 T1D_1 T1D TGTGCCGTGAACGAAGGAAGCTACATACCTACATTT CAVNEGSYIPTF TRAV12-2*01 TRAJ6*01 35.0 2144.0 CAVNEGSYIPTF_ 1 5413 PGT-178 PGT 0.74 1480 PGT-178 151 5262 4 HomoSapiens PGT LLAGIGTVPI Naive T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*02:01 B2M MHCI -1719 chip0420_803195 5.37 11.08 Chip1 T1D_1 T1D TGTGCTCTGATCTACTATGGAGGAAGCCAGGGGAATCTCGTCTTT CALIYYGGSQGNLVF TRAV19*01 TRAJ42*01 57.0 2079.0 TGTGCCACTTTTCCGGGCGGCTCCTACGAGCAGTACTTC CATFPGGSYEQYF TRBV28*01 TRBJ2-7*01 57.0 3110.0 CALIYYGGSQGNLVF_CATFPGGSYEQYF 1 4964 EBV-LMP1-1 EBV 0.75 237 EBV-LMP1-1 166 4798 6 EBV LMP1 YLLEMLWRL central memory T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*02:01 B2M MHCI -1720 chip0420_290223 12.23 6.34 Chip1 T1D_2 T1D TGTGCAGCATACGCAGGCAACATGCTCACCTTT CAAYAGNMLTF TRAV29/DV5*01 TRAJ39*01 20.0 2107.0 TGCGCCAGCAGGATGGGGGCCGGGGATACGCAGTATTTT CASRMGAGDTQYF TRBV10-2*01 TRBJ2-3*01 59.0 3370.0 CAAYAGNMLTF_CASRMGAGDTQYF 21 3402 EBV-BLMF1 EBV 1.0 2531 NEG 201 3201 10 EBV BLMF1 GLCTLVAML effector memory T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*02:01 B2M MHCI -1721 chip0420_33153 15.61 9.83 Chip1 T1D_1 T1D _ 6746 5238 EBV-BLMF1 EBV 0.83 2531 EBV-BLMF1 155 5083 12 EBV BLMF1 GLCTLVAML effector T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*02:01 B2M MHCI -1722 chip0420_729795 11.52 8.47 Chip1 T1D_2 T1D TGTGTGGTGAACGGCAGGGATAGCAGCTATAAATTGATCTTC CVVNGRDSSYKLIF TRAV12-1*01 TRAJ12*01 43.0 2086.0 TGTGCCAGCAGCTCGGGACTAGTCGCCCCCGGGGAGCTGTTTTTT CASSSGLVAPGELFF TRBV2*01 TRBJ2-2*01 34.0 2144.0 CVVNGRDSSYKLIF_CASSSGLVAPGELFF 98 3488 EBV-BLMF1 EBV 0.53 2531 NEG 187 3301 10 EBV BLMF1 GLCTLVAML effector memory T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*02:01 B2M MHCI -1723 chip0420_631331 0.77 8.75 Chip1 T1D_1 T1D _ 6746 4760 MART1-ALA MART1 0.45 269 MART1-ALA 149 4611 4 HomoSapiens MART1 ALAGIGILTV Naive T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*02:01 B2M MHCI -1724 chip0420_654222 -1.57 6.88 Chip1 T1D_1 T1D _ 6746 9658 ROTA-VP2-1 ROTA 0.77 17 NEG 162 9496 3 RotavirusA VP2 SLISGMWLL Naive T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*02:01 B2M MHCI -1725 chip0420_270470 6.11 13.12 Chip1 T1D_1 T1D _ 6746 4052 M1 FLU 0.8 1250 NEG 143 3909 7 InfluenzaA M1 GILGFVFTL transitional T cells between effector and memory populations PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*02:01 B2M MHCI -1726 chip0420_463845 10.95 11.82 Chip1 T1D_2 T1D TGCAGCGTGGGGACAGGGGGAACTAATGAAAAACTGTTTTCT CSVGTGGTNEKLFS TRBV29-1*01 TRBJ1-4*01 82.0 3199.0 _CSVGTGGTNEKLFS 1 2514 EBV-BLMF1 EBV 0.82 2531 NEG 132 2382 9 EBV BLMF1 GLCTLVAML effector memory T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*02:01 B2M MHCI -1727 chip0420_156878 7.08 13.35 Chip1 T1D_1 T1D _ 6746 4353 M1 FLU 0.63 1250 NEG 167 4186 7 InfluenzaA M1 GILGFVFTL transitional T cells between effector and memory populations PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*02:01 B2M MHCI -1728 chip0420_773890 10.25 10.88 Chip1 T1D_2 T1D _ 6746 2986 EBV-BLMF1 EBV 0.83 2531 NEG 156 2830 9 EBV BLMF1 GLCTLVAML effector memory T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*02:01 B2M MHCI -1729 chip0420_771159 -2.27 9.14 Chip1 T1D_1 T1D TGTGCCGTGGAGGAATACGATTCCGGGTATGCACTCAACTTC CAVEEYDSGYALNF TRAV2*01 TRAJ41*01 31.0 1432.0 TGTGCCAGCAGCGGCCCTAGCATCTCTCAAGAGACCCAGTACTTC CASSGPSISQETQYF TRBV5-5*01 TRBJ2-5*01 106.0 6008.0 CAVEEYDSGYALNF_CASSGPSISQETQYF 1 5693 EBV-LMP2A EBV 0.83 700 EBV-LMP2A 138 5555 3 EBV LMP2A CLGGLLTMV Naive T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*02:01 B2M MHCI -1730 chip0420_521515 13.66 6.93 Chip1 T1D_1 T1D TGCAGCGTCGGCTCCAGGGGAACTAATGAAAAACTGTTTTTT CSVGSRGTNEKLFF TRBV29-1*01 TRBJ1-4*01 1.0 68.0 _CSVGSRGTNEKLFF 283 3388 EBV-BLMF1 EBV 0.58 2531 NEG 178 3210 10 EBV BLMF1 GLCTLVAML effector memory T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*02:01 B2M MHCI -1731 chip0420_182880 9.43 9.79 Chip1 T1D_1 T1D TGTGCCAGCAGCCCAGTTAGCGGGTCAACCTACGAGCAGTACTTC CASSPVSGSTYEQYF TRBV3-1*01 TRBJ2-7*01 1.0 47.0 _CASSPVSGSTYEQYF 80 4105 EBV-BLMF1 EBV 0.79 2531 EBV-BLMF1 184 3921 8 EBV BLMF1 GLCTLVAML effector memory T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*02:01 B2M MHCI -1732 chip0420_146914 11.6 10.4 Chip1 T1D_1 T1D TGTGTGGTGAACGGGGGGGATAGCAGCTATAAATTGATCTTC CVVNGGDSSYKLIF TRAV12-1*01 TRAJ12*01 1.0 57.0 TGTGCCAGCAGTTCGGGACAGGTACTTCCCAATGAGCAGTTCTTC CASSSGQVLPNEQFF TRBV2*01 TRBJ2-1*01 83.0 3876.0 CVVNGGDSSYKLIF_CASSSGQVLPNEQFF 31 6087 EBV-BLMF1 EBV 0.83 2531 NEG 177 5910 9 EBV BLMF1 GLCTLVAML effector memory T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*02:01 B2M MHCI -1733 chip0420_81144 6.04 12.04 Chip1 T1D_1 T1D TGTGCAATGAGAGAGGATAATGCAGGCAACATGCTCACCTTT CAMREDNAGNMLTF TRAV14/DV4*01 TRAJ39*01 34.0 2032.0 CAMREDNAGNMLTF_ 5 4864 M1 FLU 0.93 1250 M1 159 4705 7 InfluenzaA M1 GILGFVFTL transitional T cells between effector and memory populations PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*02:01 B2M MHCI -1734 chip0420_114862 -0.54 8.55 Chip1 T1D_1 T1D TGTGCCAGCAGCCGAGCTGGGGAGGCGAGCACTGAAGCTTTCTTT CASSRAGEASTEAFF TRBV7-9*01 TRBJ1-1*01 76.0 3531.0 _CASSRAGEASTEAFF 1 6042 HCVNS4B-1807-1816 HCV 0.9 74 NEG 150 5892 4 HCV NS4B LLFNILGGWV Naive T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*02:01 B2M MHCI -1735 chip0420_763536 15.64 9.33 Chip1 T1D_2 T1D TGCGCCAGCAGAGCGGGCGCCGGGGATACGCAGTATTTT CASRAGAGDTQYF TRBV10-2*01 TRBJ2-3*01 23.0 971.0 _CASRAGAGDTQYF 59 2170 EBV-BLMF1 EBV 0.5 2531 NEG 158 2012 12 EBV BLMF1 GLCTLVAML effector T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*02:01 B2M MHCI -1736 chip0420_753992 11.25 10.49 Chip1 T1D_1 T1D _ 6746 3641 EBV-BLMF1 EBV 0.86 2531 NEG 163 3478 9 EBV BLMF1 GLCTLVAML effector memory T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*02:01 B2M MHCI -1737 chip0420_616802 -0.44 8.36 Chip1 T1D_1 T1D TGTGCCGTGATAGACCAGTTCTATTTT CAVIDQFYF TRAV12-2*01 TRAJ49*01 11.0 1125.0 TGTGCCAGCAGCTTAGCTTCAGCTGAAGCTTTCTTT CASSLASAEAFF TRBV7-9*01 TRBJ1-1*01 1.0 35.0 CAVIDQFYF_CASSLASAEAFF 1 8228 PGT-178 PGT 0.52 1480 PGT-178 148 8080 4 HomoSapiens PGT LLAGIGTVPI Naive T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*02:01 B2M MHCI -1738 chip0420_241088 10.35 10.56 Chip1 T1D_1 T1D TGTGCCACCCAACAGGGGAGGGACAGTCAGCCCCAGCATTTT CATQQGRDSQPQHF TRBV28*01 TRBJ1-5*01 97.0 5337.0 _CATQQGRDSQPQHF 52 4323 EBV-BLMF1 EBV 0.62 2531 NEG 155 4168 9 EBV BLMF1 GLCTLVAML effector memory T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*02:01 B2M MHCI -1739 chip0420_881623 9.82 9.33 Chip1 T1D_1 T1D _ 6746 4025 EBV-BRLF1 EBV 0.88 1264 EBV-BRLF1 133 3892 8 EBV BRLF1 YVLDHLIVV effector memory T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*02:01 B2M MHCI -1740 chip0420_274473 -3.07 9.87 Chip1 T1D_2 T1D TGTGCCAGTAGTGTGTATGGTTTCGGGGCCAACGTCCTGACTTTC CASSVYGFGANVLTF TRBV19*01 TRBJ2-6*01 57.0 3360.0 _CASSVYGFGANVLTF 1 4327 M1 FLU 0.92 1250 NEG 151 4176 2 InfluenzaA M1 GILGFVFTL Naive T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*02:01 B2M MHCI -1741 chip0420_142079 13.23 8.05 Chip1 T1D_2 T1D TGCAGCGTTGGGGGCAGCTTCTATGGCTACACCTTC CSVGGSFYGYTF TRBV29-1*01 TRBJ1-2*01 48.0 4139.0 _CSVGGSFYGYTF 42 2113 EBV-BLMF1 EBV 0.85 2531 NEG 158 1955 10 EBV BLMF1 GLCTLVAML effector memory T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*02:01 B2M MHCI -1742 chip0420_524985 6.1 13.99 Chip1 T1D_1 T1D _ 6746 4439 M1 FLU 0.67 1250 M1 171 4268 7 InfluenzaA M1 GILGFVFTL transitional T cells between effector and memory populations PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*02:01 B2M MHCI -1743 chip0420_17413 12.48 7.04 Chip1 T1D_2 T1D TGCAGCGTTGACCAAAGGACAGGGCAAAAGAAGAACTATGGCTACACCTTC CSVDQRTGQKKNYGYTF TRBV29-1*01 TRBJ1-2*01 82.0 3935.0 _CSVDQRTGQKKNYGYTF 40 3170 EBV-BLMF1 EBV 0.67 2531 NEG 161 3009 10 EBV BLMF1 GLCTLVAML effector memory T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*02:01 B2M MHCI -1744 chip0420_768908 10.79 10.67 Chip1 T1D_2 T1D TGTGTGGTGAACGGCAGGGATAACAGCTATAAATTGATCTTC CVVNGRDNSYKLIF TRAV12-1*01 TRAJ12*01 11.0 627.0 TGTGCCAGCAGCTCGGGACTAGTCGCCCCCGGGGAGCTGTTTTTT CASSSGLVAPGELFF TRBV2*01 TRBJ2-2*01 22.0 1266.0 CVVNGRDNSYKLIF_CASSSGLVAPGELFF 1 4869 EBV-BLMF1 EBV 0.88 2531 NEG 157 4712 9 EBV BLMF1 GLCTLVAML effector memory T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*02:01 B2M MHCI -1745 chip0420_773313 12.29 12.7 Chip1 T1D_2 T1D TGTGATCTCCGGCAGCATTTTGTCTTT CDLRQHFVF TRAV29/DV5*01 TRAJ26*01 1.0 56.0 TGTGCCAGCAACTTAGCGGGGACCAATGAGCAGTTCTTC CASNLAGTNEQFF TRBV9*01 TRBJ2-1*01 4.0 192.0 CDLRQHFVF_CASNLAGTNEQFF 1 1993 EBV-BLMF1 EBV 1.0 2531 NEG 159 1834 11 EBV BLMF1 GLCTLVAML effector T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*02:01 B2M MHCI -1746 chip0420_665608 6.28 9.88 Chip1 T1D_2 T1D TGCGCCAGCAGCTCAGACGGAATGAACACTGAAGCTTTCTTT CASSSDGMNTEAFF TRBV10-2*01 TRBJ1-1*01 31.0 1552.0 _CASSSDGMNTEAFF 10 5463 EBV-LMP2A EBV 0.97 700 EBV-LMP2A 187 5276 6 EBV LMP2A CLGGLLTMV central memory T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*02:01 B2M MHCI -1747 chip0420_580963 8.96 9.54 Chip1 T1D_3 T1D TGTGCTGTGAGAGACTGGGAAGGCTTT CAVRDWEGF TRAV3*01 TRAJ34*01 14.0 73.0 CAVRDWEGF_ 1 3344 BZLF1-190-197 EBV 0.73 2156 NEG 152 3192 8 EBV BZLF1 RAKFKQLL effector memory T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-B*08:01 B2M MHCI -1748 chip0420_229406 -2.16 9.72 Chip1 T1D_1 T1D TGTGCCAGCAGCGATAGCGGGATTACACAAGTTCTTC CASSDS??gGLHKFF TRBV13*01 TRBJ2-1*01 11.0 600.0 _CASSDS??gGLHKFF 1 5217 MART1-ALA MART1 0.54 269 NEG 141 5076 3 HomoSapiens MART1 ALAGIGILTV Naive T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*02:01 B2M MHCI -1749 chip0420_869045 10.81 9.35 Chip1 T1D_1 T1D TGCAGCGTCGGCTCCAGGGGAACTAATGAAAAACTGTTTTTT CSVGSRGTNEKLFF TRBV29-1*01 TRBJ1-4*01 97.0 4453.0 _CSVGSRGTNEKLFF 283 4258 EBV-BLMF1 EBV 1.0 2531 NEG 161 4097 9 EBV BLMF1 GLCTLVAML effector memory T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*02:01 B2M MHCI -1750 chip0420_166288 14.02 11.37 Chip1 T1D_2 T1D TGCAGCGTTGGAGGCACATTCTATGGCTACACCTTC CSVGGTFYGYTF TRBV29-1*01 TRBJ1-2*01 40.0 3818.0 _CSVGGTFYGYTF 12 3389 EBV-BLMF1 EBV 1.0 2531 NEG 187 3202 12 EBV BLMF1 GLCTLVAML effector T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*02:01 B2M MHCI -1751 chip0420_881447 10.14 11.33 Chip1 T1D_2 T1D _ 6746 2768 EBV-BRLF1 EBV 0.8 1264 NEG 154 2614 9 EBV BRLF1 YVLDHLIVV effector memory T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*02:01 B2M MHCI -1752 chip0420_743628 9.73 11.17 Chip1 T1D_2 T1D TGCAGCTCGCAGGAGGGCGGCTATGGCTACACCTTC CSSQEGGYGYTF TRBV29-1*01 TRBJ1-2*01 72.0 5925.0 _CSSQEGGYGYTF 11 4857 EBV-BLMF1 EBV 1.0 2531 NEG 168 4689 9 EBV BLMF1 GLCTLVAML effector memory T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*02:01 B2M MHCI -1753 chip0420_580830 12.51 8.07 Chip1 T1D_2 T1D TGCGCCAGCAGGATGGGGGCCGGGGATACGCAGTATTTT CASRMGAGDTQYF TRBV10-2*01 TRBJ2-3*01 38.0 2432.0 _CASRMGAGDTQYF 90 2577 EBV-BLMF1 EBV 0.42 2531 NEG 168 2409 10 EBV BLMF1 GLCTLVAML effector memory T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*02:01 B2M MHCI -1754 chip0420_810816 9.05 11.44 Chip1 T1D_2 T1D TGTGCCAGCAGTTCCCTTCGGGGAAGCAATCAGCCCCAGCATTTT CASSSLRGSNQPQHF TRBV28*01 TRBJ1-5*01 26.0 1309.0 _CASSSLRGSNQPQHF 1 3886 EBV-BRLF1 EBV 0.94 1264 EBV-BRLF1 163 3723 9 EBV BRLF1 YVLDHLIVV effector memory T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*02:01 B2M MHCI -1755 chip0420_49810 8.28 10.93 Chip1 T1D_2 T1D TGTGCCGTGAAGGACACCGACAAGCTCATCTTT CAVKDTDKLIF TRAV8-1*01 TRAJ34*01 3.0 396.0 CAVKDTDKLIF_ 56 4390 EBV-BRLF1 EBV 0.95 1264 EBV-BRLF1 166 4224 7 EBV BRLF1 YVLDHLIVV transitional T cells between effector and memory populations PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*02:01 B2M MHCI -1756 chip0420_62366 9.1 9.64 Chip1 T1D_2 T1D TGTGTGGTGAACCCCTTTAGGATACCGCACCCTCACCTTT CVVNPFag??gaYRTLTF TRAV12-1*01 TRAJ11*01 31.0 2078.0 CVVNPFag??gaYRTLTF_ 1 4251 EBV-BRLF1 EBV 0.95 1264 EBV-BRLF1 154 4097 8 EBV BRLF1 YVLDHLIVV effector memory T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*02:01 B2M MHCI -1757 chip0420_882310 12.2 6.49 Chip1 T1D_2 T1D TGCAGCGTGGGGACAGGGGGAACTAATGAAAAACTGTTTTTT CSVGTGGTNEKLFF TRBV29-1*01 TRBJ1-4*01 46.0 1786.0 _CSVGTGGTNEKLFF 638 4169 EBV-BLMF1 EBV 0.58 2531 NEG 168 4001 10 EBV BLMF1 GLCTLVAML effector memory T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*02:01 B2M MHCI -1758 chip0420_174250 11.78 8.04 Chip1 T1D_2 T1D TGTGCCGTGCACGACACCGACAAGCTCATCTTT CAVHDTDKLIF TRAV8-1*01 TRAJ34*01 29.0 2148.0 CAVHDTDKLIF_ 1 2481 EBV-BRLF1 EBV 0.83 1264 NEG 153 2328 10 EBV BRLF1 YVLDHLIVV effector memory T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*02:01 B2M MHCI -1759 chip0420_784939 6.25 12.14 Chip1 T1D_1 T1D TGTGCCAGCAGTTTTGGACAGGGTAGCGAAAAACTGTTTTTT CASSFGQGSEKLFF TRBV27*01 TRBJ1-4*01 38.0 1946.0 _CASSFGQGSEKLFF 1 5419 M1 FLU 0.83 1250 M1 163 5256 7 InfluenzaA M1 GILGFVFTL transitional T cells between effector and memory populations PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*02:01 B2M MHCI -1760 chip0420_681681 11.15 8.14 Chip1 T1D_2 T1D TGTGCTTCCCTAACCCCGGGGGCTTCCAAGATAATCTTT CASLTPGASKIIF TRAV8-6*01 TRAJ3*01 19.0 2046.0 TGTGCCAGCAGCTCGGGACTAGTCGCCCCCGGGGAGCTGTTTTTT CASSSGLVAPGELFF TRBV2*01 TRBJ2-2*01 27.0 1402.0 CASLTPGASKIIF_CASSSGLVAPGELFF 38 5068 EBV-BLMF1 EBV 1.0 2531 NEG 143 4925 10 EBV BLMF1 GLCTLVAML effector memory T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*02:01 B2M MHCI -1761 chip0420_394280 11.5 10.9 Chip1 T1D_2 T1D TGTGTGGTGAACGGCAGGGATAGCAGCTATAAATTGATCTTC CVVNGRDSSYKLIF TRAV12-1*01 TRAJ12*01 67.0 2675.0 TGTGCCAGCAGCTCGGGACTAGTCGCCCCCGGGGAGCTGTTTTTT CASSSGLVAPGELFF TRBV2*01 TRBJ2-2*01 10.0 796.0 CVVNGRDSSYKLIF_CASSSGLVAPGELFF 98 3059 EBV-BLMF1 EBV 0.83 2531 NEG 186 2873 9 EBV BLMF1 GLCTLVAML effector memory T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*02:01 B2M MHCI -1762 chip0420_354643 14.21 10.61 Chip1 T1D_2 T1D TGCAGCGTGGGGACAGGGGGAACTAATGAAAAACTGTTTTTT CSVGTGGTNEKLFF TRBV29-1*01 TRBJ1-4*01 138.0 6496.0 _CSVGTGGTNEKLFF 638 2849 EBV-BLMF1 EBV 0.71 2531 NEG 158 2691 12 EBV BLMF1 GLCTLVAML effector T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*02:01 B2M MHCI -1763 chip0420_256088 5.91 13.67 Chip1 T1D_1 T1D TGTGCCGTGAACTATGACAAAGCTGCAGGCAACAAGCTAACTTTT CAVNYDKAAGNKLTF TRAV12-2*01 TRAJ17*01 58.0 2116.0 TGTGCCAGTAGTATTGGGTCTGGTGAGCAGTTCTTC CASSIGSGEQFF TRBV19*01 TRBJ2-1*01 26.0 1361.0 CAVNYDKAAGNKLTF_CASSIGSGEQFF 2 4213 M1 FLU 0.9 1250 M1 175 4038 7 InfluenzaA M1 GILGFVFTL transitional T cells between effector and memory populations PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*02:01 B2M MHCI -1764 chip0420_228298 9.76 11.32 Chip1 T1D_2 T1D TGTGCAGAGAATAGATACGGCACCCTCCCCTTT CAENRYGTLPF TRAV13-2*01,TRAV5*01 TRAJ11*01 2.0 7.0 CAENRYGTLPF_ 1 2984 EBV-BLMF1 EBV 1.0 2531 NEG 166 2818 9 EBV BLMF1 GLCTLVAML effector memory T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*02:01 B2M MHCI -1765 chip0420_864030 14.69 10.14 Chip1 T1D_2 T1D TGTGCCAGCAGCCCCTCGACTAGCGGTGTGGGGAGACCCAGTACTTC CASSPSTag?RCGETQYF TRBV3-1*01 TRBJ2-5*01 29.0 1996.0 _CASSPSTag?RCGETQYF 1 2019 EBV-BRLF1 EBV 0.89 1264 EBV-BRLF1 152 1867 12 EBV BRLF1 YVLDHLIVV effector T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*02:01 B2M MHCI -1766 chip0420_705074 12.44 6.82 Chip1 T1D_1 T1D TGCAGCGTCGGCTCCAGGGGAACTAATGAAAAACTGTTTTTT CSVGSRGTNEKLFF TRBV29-1*01 TRBJ1-4*01 74.0 4081.0 _CSVGSRGTNEKLFF 283 3117 EBV-BLMF1 EBV 0.58 2531 NEG 158 2959 10 EBV BLMF1 GLCTLVAML effector memory T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*02:01 B2M MHCI -1767 chip0420_340301 -2.01 9.16 Chip1 T1D_1 T1D _ 6746 6991 GP160-311-320 HIV 0.67 109 GP160-311-320 177 6814 3 HIV-1 GP160 RGPGRAFVTI Naive T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*02:01 B2M MHCI -1768 chip0420_683684 -2.16 10.14 Chip1 T1D_1 T1D TGTGCCAGCAGCCAGGATGGGACTAGGGTGGGTGAGCAGTTCTTC CASSQDGTRVGEQFF TRBV3-1*01 TRBJ2-1*01 22.0 1670.0 _CASSQDGTRVGEQFF 1 5268 PGT-178 PGT 0.91 1480 PGT-178 156 5112 3 HomoSapiens PGT LLAGIGTVPI Naive T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*02:01 B2M MHCI -1769 chip0420_267519 13.97 7.38 Chip1 T1D_1 T1D TGTGCCACCCAACAGGGGAGGGACAGTCAGCCCCAGCATTTT CATQQGRDSQPQHF TRBV28*01 TRBJ1-5*01 84.0 4448.0 _CATQQGRDSQPQHF 52 3773 EBV-BLMF1 EBV 0.79 2531 EBV-BLMF1 181 3592 10 EBV BLMF1 GLCTLVAML effector memory T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*02:01 B2M MHCI -1770 chip0420_240694 11.53 7.27 Chip1 T1D_2 T1D TGTGTGGTGAACGGGAAGGATAGCAGCTATAAATTGATCTTC CVVNGKDSSYKLIF TRAV12-1*01 TRAJ12*01 1.0 13.0 TGTGCCAGCAGTGGAGGGGCGGTCGCGCCGAGTGAGCAGTTCTTC CASSGGAVAPSEQFF TRBV2*01 TRBJ2-1*01 49.0 2987.0 CVVNGKDSSYKLIF_CASSGGAVAPSEQFF 12 3694 EBV-BLMF1 EBV 0.67 2531 NEG 180 3514 10 EBV BLMF1 GLCTLVAML effector memory T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*02:01 B2M MHCI -1771 chip0420_434070 6.08 13.56 Chip1 T1D_1 T1D _ 6746 4437 M1 FLU 0.83 1250 NEG 140 4297 7 InfluenzaA M1 GILGFVFTL transitional T cells between effector and memory populations PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*02:01 B2M MHCI -1772 chip0420_212324 10.2 10.42 Chip1 T1D_2 T1D _ 6746 3101 EBV-BLMF1 EBV 0.7 2531 NEG 169 2932 9 EBV BLMF1 GLCTLVAML effector memory T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*02:01 B2M MHCI -1773 chip0420_864558 11.64 8.36 Chip1 T1D_1 T1D TGTGCCAGCAGCCAAAGCCCGGGTGGTACGCAGTATTTT CASSQSPGGTQYF TRBV14*01 TRBJ2-3*01 4.0 322.0 _CASSQSPGGTQYF 94 3723 EBV-BLMF1 EBV 0.83 2531 NEG 171 3552 10 EBV BLMF1 GLCTLVAML effector memory T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*02:01 B2M MHCI -1774 chip0420_804295 12.51 11.2 Chip1 T1D_1 T1D TGTGCCAGCAGCACGGGACAGCTATCGAACACCGGGGAGCTGTTTTTT CASSTGQLSNTGELFF TRBV9*01 TRBJ2-2*01 31.0 1418.0 _CASSTGQLSNTGELFF 82 2883 EBV-BLMF1 EBV 0.43 2531 NEG 157 2726 9 EBV BLMF1 GLCTLVAML effector memory T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*02:01 B2M MHCI -1775 chip0420_738543 9.51 8.22 Chip1 T1D_2 T1D _ 6746 3679 EBV-BLMF1 EBV 0.73 2531 NEG 165 3514 8 EBV BLMF1 GLCTLVAML effector memory T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*02:01 B2M MHCI -1776 chip0420_233095 5.51 8.87 Chip1 T1D_2 T1D _ 6746 8959 MART1-ALA MART1 0.58 269 NEG 143 8816 6 HomoSapiens MART1 ALAGIGILTV central memory T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*02:01 B2M MHCI -1777 chip0420_579564 -2.44 9.41 Chip1 T1D_1 T1D TGTGCCGTGGAGCCCGGCAATTCGCCCTTT CAVEPGNSPF TRAV12-2*01 TRAJ27*01 4.0 293.0 TGTGCCAGCAGCCCGCAAGCGGGGGGGTCTGTAGATACGCAGTATTTT CASSPQAGGSVDTQYF TRBV7-8*01 TRBJ2-3*01 11.0 315.0 CAVEPGNSPF_CASSPQAGGSVDTQYF 1 5625 PGT-178 PGT 0.48 1480 PGT-178 147 5478 3 HomoSapiens PGT LLAGIGTVPI Naive T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*02:01 B2M MHCI -1778 chip0420_808236 16.0 10.94 Chip1 T1D_1 T1D TGTGCCAGCAGCACGGGACAGCTATCGAACACCGGGGAGCTGTTTTTT CASSTGQLSNTGELFF TRBV9*01 TRBJ2-2*01 4.0 72.0 _CASSTGQLSNTGELFF 82 1834 EBV-BLMF1 EBV 0.67 2531 NEG 147 1687 12 EBV BLMF1 GLCTLVAML effector T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*02:01 B2M MHCI -1779 chip0420_757504 14.7 12.02 Chip1 T1D_2 T1D TGCAGCGTGGGGACAGGGGGAACTAATGAAAAACTGTTTTTT CSVGTGGTNEKLFF TRBV29-1*01 TRBJ1-4*01 8.0 360.0 _CSVGTGGTNEKLFF 638 2238 EBV-BLMF1 EBV 0.45 2531 NEG 158 2080 12 EBV BLMF1 GLCTLVAML effector T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*02:01 B2M MHCI -1780 chip0420_302047 11.46 7.22 Chip1 T1D_2 T1D TGCGCCAGCAGGATGGGGGCCGGGGATACGCAGTATTTT CASRMGAGDTQYF TRBV10-2*01 TRBJ2-3*01 52.0 2942.0 _CASRMGAGDTQYF 90 2871 EBV-BLMF1 EBV 0.8 2531 NEG 169 2702 10 EBV BLMF1 GLCTLVAML effector memory T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*02:01 B2M MHCI -1781 chip0420_547803 10.54 9.46 Chip1 T1D_1 T1D TGTGCCAGCAGTGAGGCATTTCTAGCGGACAATGAGCAGTTCTTC CASSEAFLADNEQFF TRBV6-4*01 TRBJ2-1*01 56.0 2713.0 _CASSEAFLADNEQFF 6 3149 EBV-BRLF1 EBV 0.53 1264 EBV-BRLF1 155 2994 9 EBV BRLF1 YVLDHLIVV effector memory T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*02:01 B2M MHCI -1782 chip0420_76602 13.22 10.69 Chip1 T1D_2 T1D TGCAGCGTGGGGACAGGGGGAACTAATGAAAAACTGTTTTTT CSVGTGGTNEKLFF TRBV29-1*01 TRBJ1-4*01 61.0 3137.0 _CSVGTGGTNEKLFF 638 3270 EBV-BLMF1 EBV 0.67 2531 NEG 164 3106 9 EBV BLMF1 GLCTLVAML effector memory T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*02:01 B2M MHCI -1783 chip0420_134906 11.68 8.56 Chip1 T1D_2 T1D TGTGCAATGAGCCTTTATCAGGGCGGATCTGAAAAGCTGGTCTTT CAMSLYQGGSEKLVF TRAV12-3*01 TRAJ57*01 42.0 2114.0 TGCGCCAGCAGTGAGACGAACGTGAACACTGAAGCTTTCTTT CASSETNVNTEAFF TRBV10-2*01 TRBJ1-1*01 135.0 5157.0 CAMSLYQGGSEKLVF_CASSETNVNTEAFF 1 2581 EBV-BLMF1 EBV 0.47 2531 NEG 183 2398 10 EBV BLMF1 GLCTLVAML effector memory T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*02:01 B2M MHCI -1784 chip0420_112174 16.11 11.07 Chip1 T1D_1 T1D TGTGCCAGCAGCCCAGTTAGCGGGTCAACCTACGAGCAGTACTTC CASSPVSGSTYEQYF TRBV3-1*01 TRBJ2-7*01 8.0 424.0 _CASSPVSGSTYEQYF 80 1713 EBV-BLMF1 EBV 1.0 2531 NEG 151 1562 12 EBV BLMF1 GLCTLVAML effector T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*02:01 B2M MHCI -1785 chip0420_884463 6.87 13.73 Chip1 T1D_1 T1D TGTGGCACTCAAGAGAATGACAGCTGGGGGAAATTGCAGTTT CGTQENDSWGKLQF TRAV30*01 TRAJ24*01 33.0 2310.0 TGTGCCAGTAGTGTCAGGGCAGGAGAGACCCAGTACTTC CASSVRAGETQYF TRBV19*01 TRBJ2-5*01 6.0 466.0 CGTQENDSWGKLQF_CASSVRAGETQYF 9 3362 M1 FLU 0.9 1250 NEG 169 3193 7 InfluenzaA M1 GILGFVFTL transitional T cells between effector and memory populations PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*02:01 B2M MHCI -1786 chip0420_731717 11.38 11.01 Chip1 T1D_2 T1D TGTGCCAGCAGCCCCTCGACTAGCGGGAGTGGGGAGACCCAGTACTTC CASSPSTSGSGETQYF TRBV3-1*01 TRBJ2-5*01 36.0 2462.0 _CASSPSTSGSGETQYF 18 2602 EBV-BRLF1 EBV 0.94 1264 EBV-BRLF1 173 2429 9 EBV BRLF1 YVLDHLIVV effector memory T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*02:01 B2M MHCI -1787 chip0420_606150 11.34 11.55 Chip1 T1D_2 T1D TGCAGCGTTGGGGGCAGCTTCTATGGCTACACCTTC CSVGGSFYGYTF TRBV29-1*01 TRBJ1-2*01 88.0 8109.0 _CSVGGSFYGYTF 42 2262 EBV-BLMF1 EBV 1.0 2531 NEG 177 2085 9 EBV BLMF1 GLCTLVAML effector memory T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*02:01 B2M MHCI -1788 chip0420_364826 -0.82 10.4 Chip1 T1D_1 T1D TGTGCAATGAGCCGATCTAACTTTGGAAATGAGAAATTAACCTTT CAMSRSNFGNEKLTF TRAV12-3*01 TRAJ48*01 35.0 2084.0 CAMSRSNFGNEKLTF_ 5 6666 PGT-178 PGT 0.74 1480 PGT-178 181 6485 3 HomoSapiens PGT LLAGIGTVPI Naive T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*02:01 B2M MHCI -1789 chip0420_855606 14.71 10.72 Chip1 T1D_2 T1D TGTGTGGTGAACGGCAGGGATAGCAGCTATAAATTGATCTTC CVVNGRDSSYKLIF TRAV12-1*01 TRAJ12*01 4.0 309.0 TGTGCCAGCAGCTCGGGACTAGTCGCCCCCGGGGAGCTGTTTTTT CASSSGLVAPGELFF TRBV2*01 TRBJ2-2*01 129.0 7717.0 CVVNGRDSSYKLIF_CASSSGLVAPGELFF 98 3377 EBV-BLMF1 EBV 0.88 2531 NEG 160 3217 12 EBV BLMF1 GLCTLVAML effector T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*02:01 B2M MHCI -1790 chip0420_733227 10.89 11.66 Chip1 T1D_1 T1D TGTGCCAGCAGCCAAAGCCCGGGTGGTACGCAGTATTTT CASSQSPGGTQYF TRBV14*01 TRBJ2-3*01 6.0 331.0 _CASSQSPGGTQYF 94 2994 EBV-BLMF1 EBV 0.75 2531 NEG 156 2838 9 EBV BLMF1 GLCTLVAML effector memory T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*02:01 B2M MHCI -1791 chip0420_432037 13.28 6.69 Chip1 T1D_1 T1D _ 6746 3471 EBV-BLMF1 EBV 0.54 2531 EBV-BLMF1 180 3291 10 EBV BLMF1 GLCTLVAML effector memory T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*02:01 B2M MHCI -1792 chip0420_849670 -3.31 8.27 Chip1 T1D_1 T1D TGTGCCAGCAGTGAACTAGCGGAGGCCCCCTATGAGCAGTTCTTC CASSELAEAPYEQFF TRBV6-1*01 TRBJ2-1*01 25.0 1084.0 _CASSELAEAPYEQFF 1 5046 HCVNS3-1073-1081 HCV 0.67 36 NEG 134 4912 2 HCV NS3 CINGVCWTV Naive T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*02:01 B2M MHCI -1793 chip0420_430409 11.13 10.8 Chip1 T1D_1 T1D TGTGCTGTGGCGCGGTCCCTCTAGGAGGACGCCTTGGCACTCTCCTCTTT CAVARSL*g?aGRLGTLLF TRAV2*01 TRAJ42*01 46.0 1904.0 TGTGCCAGCAGTCTTTTTTCGAGTGAGCAGTTCTTC CASSLFSSEQFF TRBV28*01 TRBJ2-1*01 18.0 1718.0 CAVARSL*g?aGRLGTLLF_CASSLFSSEQFF 1 3328 EBV-BRLF1 EBV 0.9 1264 EBV-BRLF1 168 3160 9 EBV BRLF1 YVLDHLIVV effector memory T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*02:01 B2M MHCI -1794 chip0420_207659 -4.06 11.32 Chip1 T1D_1 T1D TGTGTCTTCTCGGGGGGTTACCTGTCAGTTACCTTT CVFSGGYLSVTF TRAV12-1*01 TRAJ13*01 27.0 2137.0 TGTGCCAGCAGTGTAGGACAGGGGGTCGCCGAGCAGTACTTC CASSVGQGVAEQYF TRBV2*01 TRBJ2-7*01 4.0 43.0 CVFSGGYLSVTF_CASSVGQGVAEQYF 1 4251 PGT-178 PGT 0.52 1480 PGT-178 164 4087 1 HomoSapiens PGT LLAGIGTVPI Naive T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*02:01 B2M MHCI -1795 chip0420_557704 5.56 13.01 Chip1 T1D_1 T1D TGTGCCAGCAGCTACGGACAGGGTATGGACATTCAGTACTTC CASSYGQGMDIQYF TRBV27*01 TRBJ2-4*01 69.0 4080.0 _CASSYGQGMDIQYF 1 7719 M1 FLU 0.77 1250 M1 175 7544 7 InfluenzaA M1 GILGFVFTL transitional T cells between effector and memory populations PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*02:01 B2M MHCI -1796 chip0420_158160 8.17 10.92 Chip1 T1D_2 T1D TGTGCAGCAAGTCTTGGATGGATAGCAGCTCTAACTTGATCTTC CAASLGWa?tSSSNLIF TRAV2*01 TRAJ12*01 2.0 44.0 TGTGCCAGCAGCTTAATTGAAGGGGGGTATAACTCTGGGGCCAACGTCCTGACTTTC CASSLIEGGYNSGANVLTF TRBV7-6*01 TRBJ2-6*01 9.0 310.0 CAASLGWa?tSSSNLIF_CASSLIEGGYNSGANVLTF 1 4075 EBV-BRLF1 EBV 1.0 1264 EBV-BRLF1 176 3899 7 EBV BRLF1 YVLDHLIVV transitional T cells between effector and memory populations PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*02:01 B2M MHCI -1797 chip0420_130001 14.19 10.47 Chip1 T1D_2 T1D TGTGCTTCCCTAACCCCGGGGGCCTCCAAGATAATCTTT CASLTPGASKIIF TRAV8-6*01 TRAJ3*01 6.0 625.0 TGTGCCAGCAGCTCGGGACTAGTCGCCCCCGGGGAGCTGTTTTTT CASSSGLVAPGELFF TRBV2*01 TRBJ2-2*01 43.0 2943.0 CASLTPGASKIIF_CASSSGLVAPGELFF 38 3279 EBV-BLMF1 EBV 0.57 2531 NEG 171 3108 12 EBV BLMF1 GLCTLVAML effector T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*02:01 B2M MHCI -1798 chip0420_838934 9.9 9.59 Chip1 T1D_1 T1D _ 6746 4200 EBV-BRLF1 EBV 0.91 1264 EBV-BRLF1 161 4039 8 EBV BRLF1 YVLDHLIVV effector memory T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*02:01 B2M MHCI -1799 chip0420_714943 11.05 10.23 Chip1 T1D_1 T1D TGTGCCAGTAGTCCCCACTTGGGTGCGGCGGCCGAGCAGTACTTC CASSPHLGAAAEQYF TRBV19*01 TRBJ2-7*01 31.0 1114.0 _CASSPHLGAAAEQYF 10 3905 EBV-BRLF1 EBV 0.85 1264 EBV-BRLF1 177 3728 9 EBV BRLF1 YVLDHLIVV effector memory T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*02:01 B2M MHCI -1800 chip0420_306829 14.24 9.33 Chip1 T1D_2 T1D TGTGCCAGCAGCCATGCACTAGAGAACACCGGGGAGCTGTTTTTT CASSHALENTGELFF TRBV3-1*01 TRBJ2-2*01 87.0 4781.0 _CASSHALENTGELFF 3 3719 EBV-BRLF1 EBV 0.88 1264 EBV-BRLF1 163 3556 12 EBV BRLF1 YVLDHLIVV effector T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*02:01 B2M MHCI -1801 chip0420_179632 9.02 9.09 Chip1 T1D_1 T1D TGTGCCACCCAACAGGGGAGGGACAGTCAGCCCCAGCATTTT CATQQGRDSQPQHF TRBV28*01 TRBJ1-5*01 75.0 3601.0 _CATQQGRDSQPQHF 52 6365 EBV-BLMF1 EBV 0.48 2531 EBV-BLMF1 147 6218 8 EBV BLMF1 GLCTLVAML effector memory T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*02:01 B2M MHCI -1802 chip0420_849701 11.02 8.3 Chip1 T1D_2 T1D TGTGCCAGCAGTGAATGGACAGGGTATCAGCCCCAGCATTTT CASSEWTGYQPQHF TRBV6-1*01 TRBJ1-5*01 61.0 2031.0 _CASSEWTGYQPQHF 9 3299 EBV-BLMF1 EBV 0.75 2531 NEG 171 3128 10 EBV BLMF1 GLCTLVAML effector memory T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*02:01 B2M MHCI -1803 chip0420_265250 11.74 7.53 Chip1 T1D_2 T1D TGTGCTTCCCTAACCCCGGGGGCTTCCAAGATAATCTTT CASLTPGASKIIF TRAV8-6*01 TRAJ3*01 21.0 1123.0 TGTGCCAGCAGCTCGGGACTAGTCGCCCCCGGGGAGCTGTTTTTT CASSSGLVAPGELFF TRBV2*01 TRBJ2-2*01 74.0 5017.0 CASLTPGASKIIF_CASSSGLVAPGELFF 38 2987 EBV-BLMF1 EBV 0.6 2531 NEG 166 2821 10 EBV BLMF1 GLCTLVAML effector memory T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*02:01 B2M MHCI -1804 chip0420_532426 6.2 13.41 Chip1 T1D_1 T1D TGTGCCAGTAGTTTTGGAGCCGGGGAGCTGTTTTTT CASSFGAGELFF TRBV19*01 TRBJ2-2*01 4.0 202.0 _CASSFGAGELFF 5 5678 M1 FLU 0.42 1250 M1 142 5536 7 InfluenzaA M1 GILGFVFTL transitional T cells between effector and memory populations PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*02:01 B2M MHCI -1805 chip0420_348926 6.03 13.88 Chip1 T1D_1 T1D TGTGCCAGTAGTATAAATGGGGGCCGGAGGGATGGCTACACCTTC CASSINGGRRDGYTF TRBV19*01 TRBJ1-2*01 61.0 2962.0 _CASSINGGRRDGYTF 32 5372 M1 FLU 0.71 1250 NEG 178 5194 7 InfluenzaA M1 GILGFVFTL transitional T cells between effector and memory populations PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*02:01 B2M MHCI -1806 chip0420_13304 13.63 10.74 Chip1 T1D_2 T1D TGCAGCGTTGGAGGCACATTCTATGGCTACACCTTC CSVGGTFYGYTF TRBV29-1*01 TRBJ1-2*01 74.0 5636.0 _CSVGGTFYGYTF 12 2006 EBV-BLMF1 EBV 0.78 2531 NEG 157 1849 12 EBV BLMF1 GLCTLVAML effector T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*02:01 B2M MHCI -1807 chip0420_375568 -1.03 10.34 Chip1 T1D_1 T1D TGCAGTGCTAGGGGAGTCACAGGCTCTGGAAACACCATATATTTT CSARGVTGSGNTIYF TRBV20-1*01 TRBJ1-3*01 46.0 2336.0 _CSARGVTGSGNTIYF 1 5261 PGT-178 PGT 0.76 1480 PGT-178 159 5102 3 HomoSapiens PGT LLAGIGTVPI Naive T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*02:01 B2M MHCI -1808 chip0420_452166 10.29 9.67 Chip1 T1D_1 T1D _ 6746 3576 EBV-BLMF1 EBV 1.0 2531 EBV-BLMF1 164 3412 9 EBV BLMF1 GLCTLVAML effector memory T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*02:01 B2M MHCI -1809 chip0420_252818 6.67 11.28 Chip1 T1D_1 T1D TGTGCCAGCAGTGAGACAGCTAGTCAGCCCCAGCATTTT CASSETASQPQHF TRBV6-1*01 TRBJ1-5*01 15.0 353.0 _CASSETASQPQHF 1 4938 EBV-BRLF1 EBV 0.9 1264 EBV-BRLF1 177 4761 7 EBV BRLF1 YVLDHLIVV transitional T cells between effector and memory populations PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*02:01 B2M MHCI -1810 chip0420_172491 8.05 10.92 Chip1 T1D_2 T1D TGCAGCGTGGGGACAGGGGGAACTAATGAAAAACTGTTTTTT CSVGTGGTNEKLFF TRBV29-1*01 TRBJ1-4*01 63.0 3582.0 _CSVGTGGTNEKLFF 638 4174 EBV-BLMF1 EBV 0.8 2531 NEG 150 4024 7 EBV BLMF1 GLCTLVAML transitional T cells between effector and memory populations PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*02:01 B2M MHCI -1811 chip0420_91965 5.91 13.67 Chip1 T1D_1 T1D TGTGCTGTGCCCCTGGGGGGTTTTCTGGTGGCTACAATAAGCTGATTTTT CAVPLGGFc?tGGYNKLIF TRAV20*01 TRAJ4*01 1.0 46.0 CAVPLGGFc?tGGYNKLIF_ 2 4965 M1 FLU 0.64 1250 NEG 162 4803 7 InfluenzaA M1 GILGFVFTL transitional T cells between effector and memory populations PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*02:01 B2M MHCI -1812 chip0420_781722 11.61 10.47 Chip1 T1D_1 T1D TGCAGCGTCGGCTCCAGGGGAACTAATGAAAAACTGTTTTTT CSVGSRGTNEKLFF TRBV29-1*01 TRBJ1-4*01 84.0 4929.0 _CSVGSRGTNEKLFF 283 3191 EBV-BLMF1 EBV 0.57 2531 NEG 165 3026 9 EBV BLMF1 GLCTLVAML effector memory T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*02:01 B2M MHCI -1813 chip0420_756994 -0.55 4.33 Chip1 T1D_1 T1D _ 6746 5645 PGT-178 PGT 0.46 1480 PGT-178 152 5493 5 HomoSapiens PGT LLAGIGTVPI natural killer-like T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*02:01 B2M MHCI -1814 chip0420_551917 -3.12 8.17 Chip1 T1D_1 T1D TGTGCCTGGAGCGGGACAGGGTTGGGTCAGCCCCAGCATTTT CAWSGTGLGQPQHF TRBV30*01 TRBJ1-5*01 31.0 1220.0 _CAWSGTGLGQPQHF 1 5647 PGT-178 PGT 0.58 1480 PGT-178 159 5488 2 HomoSapiens PGT LLAGIGTVPI Naive T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*02:01 B2M MHCI -1815 chip0420_468600 11.99 12.57 Chip1 T1D_1 T1D _ 6746 1857 EBV-BLMF1 EBV 0.5 2531 NEG 144 1713 11 EBV BLMF1 GLCTLVAML effector T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*02:01 B2M MHCI -1816 chip0420_210465 0.18 8.81 Chip1 T1D_1 T1D TGTGCCGTGAGAGATGACAAGATCATCTTT CAVRDDKIIF TRAV12-2*01 TRAJ30*01 1.0 31.0 TGTGCCAGCAGCCCCCGTGCGGCGGGAGGGCTGGAGACCCAGTACTTC CASSPRAAGGLETQYF TRBV6-1*01 TRBJ2-5*01 7.0 141.0 CAVRDDKIIF_CASSPRAAGGLETQYF 1 4727 PGT-178 PGT 0.73 1480 PGT-178 137 4590 4 HomoSapiens PGT LLAGIGTVPI Naive T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*02:01 B2M MHCI -1817 chip0420_536576 13.17 10.33 Chip1 T1D_1 T1D _ 6746 4052 EBV-BLMF1 EBV 0.6 2531 NEG 168 3884 9 EBV BLMF1 GLCTLVAML effector memory T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*02:01 B2M MHCI -1818 chip0420_329699 11.11 8.86 Chip1 T1D_1 T1D TGCGGCCCCGCGGAACCTAACGACTACAAGCTCAGCTTT CGPAEPNDYKLSF TRAV30*01 TRAJ20*01 36.0 2062.0 TGTGCCAGCAGCACGGGACAGCTATCGAACACCGGAGAGCTGTTTTTT CASSTGQLSNTGELFF TRBV9*01 TRBJ2-2*01 47.0 2032.0 CGPAEPNDYKLSF_CASSTGQLSNTGELFF 8 3557 EBV-BLMF1 EBV 0.76 2531 NEG 164 3393 10 EBV BLMF1 GLCTLVAML effector memory T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*02:01 B2M MHCI -1819 chip0420_859432 13.18 7.15 Chip1 T1D_2 T1D TGTGTGGTGAACGGGAAGGATAGCAGCTATAAATTGATCTTC CVVNGKDSSYKLIF TRAV12-1*01 TRAJ12*01 7.0 308.0 TGTGCCAGCAGTGGAGGGGCGGTCGCGCCGAGTGAGCAGTTCTTC CASSGGAVAPSEQFF TRBV2*01 TRBJ2-1*01 1.0 85.0 CVVNGKDSSYKLIF_CASSGGAVAPSEQFF 12 3500 EBV-BLMF1 EBV 0.55 2531 NEG 179 3321 10 EBV BLMF1 GLCTLVAML effector memory T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*02:01 B2M MHCI -1820 chip0420_347724 6.48 11.69 Chip1 T1D_1 T1D _ 6746 4345 M1 FLU 0.85 1250 M1 168 4177 7 InfluenzaA M1 GILGFVFTL transitional T cells between effector and memory populations PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*02:01 B2M MHCI -1821 chip0420_865139 -3.34 13.83 Chip1 T1D_1 T1D TGTGCCAGTAGTCTTTTAGCGGGAGTCGAGCAGTACTTC CASSLLAGVEQYF TRBV19*01 TRBJ2-7*01 28.0 1764.0 _CASSLLAGVEQYF 1 3493 M1 FLU 0.73 1250 NEG 140 3353 1 InfluenzaA M1 GILGFVFTL Naive T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*02:01 B2M MHCI -1822 chip0420_669029 8.55 8.9 Chip1 T1D_1 T1D TGTGTGGTGAACGTTACCTACAACTTCAACAAATTTTACTTT CVVNVTYNFNKFYF TRAV12-1*01 TRAJ21*01 28.0 1635.0 TGTGCCAGCAGTGCCGGGACAGTTGCACCCGGGGAGCTGTTTTTT CASSAGTVAPGELFF TRBV2*01 TRBJ2-2*01 36.0 1937.0 CVVNVTYNFNKFYF_CASSAGTVAPGELFF 8 6264 EBV-BLMF1 EBV 0.53 2531 EBV-BLMF1 198 6066 8 EBV BLMF1 GLCTLVAML effector memory T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*02:01 B2M MHCI -1823 chip0420_6568 13.3 8.33 Chip1 T1D_2 T1D TACGCAGACAAGCCCTGTAGGTAACCAAAAAGTTACCTTT YADKPCag??gtNQKVTF TRAV5*01 TRAJ13*01 4.0 562.0 TGCAGCGTGGGGACAGGGGGAACTAATGAAAAACTGTTTTTT CSVGTGGTNEKLFF TRBV29-1*01 TRBJ1-4*01 74.0 3315.0 YADKPCag??gtNQKVTF_CSVGTGGTNEKLFF 1 1958 EBV-BLMF1 EBV 1.0 2531 NEG 160 1798 10 EBV BLMF1 GLCTLVAML effector memory T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*02:01 B2M MHCI -1824 chip0420_737270 11.82 10.72 Chip1 T1D_1 T1D TGTGCTCTAAAGGACACCGACAAGCTCATCTTT CALKDTDKLIF TRAV16*01 TRAJ34*01 1.0 122.0 CALKDTDKLIF_ 2 3121 EBV-BRLF1 EBV 0.93 1264 EBV-BRLF1 184 2937 9 EBV BRLF1 YVLDHLIVV effector memory T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*02:01 B2M MHCI -1825 chip0420_833349 6.0 13.31 Chip1 T1D_1 T1D TGTGCCAGTAGTAGTAGGAGCACAGATACGCAGTATTTT CASSSRSTDTQYF TRBV19*01 TRBJ2-3*01 1.0 25.0 _CASSSRSTDTQYF 6 3094 M1 FLU 0.94 1250 M1 151 2943 7 InfluenzaA M1 GILGFVFTL transitional T cells between effector and memory populations PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*02:01 B2M MHCI -1826 chip0420_738577 14.24 10.02 Chip1 T1D_1 T1D TGTGCCACCAGTGATTGGCTGACTACCGAGCAGTACTTC CATSDWLTTEQYF TRBV24-1*01 TRBJ2-7*01 27.0 1163.0 _CATSDWLTTEQYF 1 3748 EBV-BRLF1 EBV 0.86 1264 EBV-BRLF1 170 3578 12 EBV BRLF1 YVLDHLIVV effector T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*02:01 B2M MHCI -1827 chip0420_103083 15.58 9.18 Chip1 T1D_1 T1D TGCGGCACAGAGGAACCTAACGACTACAAGCTCAGCTTT CGTEEPNDYKLSF TRAV30*01 TRAJ20*01 26.0 1944.0 CGTEEPNDYKLSF_ 22 2243 EBV-BLMF1 EBV 0.75 2531 NEG 133 2110 12 EBV BLMF1 GLCTLVAML effector T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*02:01 B2M MHCI -1828 chip0420_30606 16.21 11.39 Chip1 T1D_2 T1D TGTGTGGTGAACGGCAGGGATAGCAGCTATAAATTGATCTTC CVVNGRDSSYKLIF TRAV12-1*01 TRAJ12*01 18.0 805.0 TGTGCCAGCAGCTCGGGACTAGTCGCCCCCGGGGAGCTGTTTTTT CASSSGLVAPGELFF TRBV2*01 TRBJ2-2*01 50.0 2348.0 CVVNGRDSSYKLIF_CASSSGLVAPGELFF 98 2207 EBV-BLMF1 EBV 0.5 2531 NEG 190 2017 12 EBV BLMF1 GLCTLVAML effector T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*02:01 B2M MHCI -1829 chip0420_712386 5.82 13.3 Chip1 T1D_1 T1D _ 6746 4328 M1 FLU 0.96 1250 M1 166 4162 7 InfluenzaA M1 GILGFVFTL transitional T cells between effector and memory populations PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*02:01 B2M MHCI -1830 chip0420_683265 11.38 8.45 Chip1 T1D_2 T1D TGTGCCGTGGACCCATGGGGTAACCAGTTCTATTTT CAVDPWGNQFYF TRAV39*01 TRAJ49*01 8.0 857.0 TGCGCCAGCAGAGCGGGAGCCGGGGATACGCAGTATTTT CASRAGAGDTQYF TRBV10-2*01 TRBJ2-3*01 25.0 1309.0 CAVDPWGNQFYF_CASRAGAGDTQYF 1 3050 EBV-BLMF1 EBV 0.86 2531 NEG 179 2871 10 EBV BLMF1 GLCTLVAML effector memory T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*02:01 B2M MHCI -1831 chip0420_662083 10.98 8.38 Chip1 T1D_2 T1D TGTGCTTCCCTAACCCCGGGGGCTTCCAAGATAATCTTT CASLTPGASKIIF TRAV8-6*01 TRAJ3*01 31.0 2482.0 CASLTPGASKIIF_ 7 4274 EBV-BLMF1 EBV 0.53 2531 NEG 170 4104 10 EBV BLMF1 GLCTLVAML effector memory T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*02:01 B2M MHCI -1832 chip0420_207740 5.56 13.34 Chip1 T1D_1 T1D _ 6746 5319 M1 FLU 0.75 1250 NEG 158 5161 7 InfluenzaA M1 GILGFVFTL transitional T cells between effector and memory populations PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*02:01 B2M MHCI -1833 chip0420_132827 -2.72 14.27 Chip1 T1D_1 T1D TGTGCCAGCAGGCCCGGGACTAGCTGGAATGAGCAGTTCTTC CASRPGTSWNEQFF TRBV12-3*01,TRBV12-4*01 TRBJ2-1*01 11.0 423.0 _CASRPGTSWNEQFF 1 3092 ADH-79-88 ADH 0.79 15 NEG 138 2954 1 HomoSapiens ADH RQFGPDWIVA Naive T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*02:01 B2M MHCI -1834 chip0420_684711 5.92 13.23 Chip1 T1D_1 T1D TGTGCCGTGAACTATGACAAAGCTGCAGGCAACAAGCTAACTTTT CAVNYDKAAGNKLTF TRAV12-2*01 TRAJ17*01 15.0 508.0 TGTGCCAGTAGTATTGGGTCTGGTGAGCAGTTCTTC CASSIGSGEQFF TRBV19*01 TRBJ2-1*01 1.0 54.0 CAVNYDKAAGNKLTF_CASSIGSGEQFF 2 5220 M1 FLU 0.81 1250 M1 187 5033 7 InfluenzaA M1 GILGFVFTL transitional T cells between effector and memory populations PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*02:01 B2M MHCI -1835 chip0420_331474 -2.47 8.72 Chip1 T1D_1 T1D _ 6746 6695 ZNT8-115-123 ZNT8 0.53 74 ZNT8-115-123 145 6550 2 HomoSapiens ZNT8 LLSLFSLWL Naive T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*02:01 B2M MHCI -1836 chip0420_30140 11.62 6.77 Chip1 T1D_2 T1D TGTGCCAGCAGCTCGGGACTAGTCGCCCCCGGGGAGCTGTTTTTT CASSSGLVAPGELFF TRBV2*01 TRBJ2-2*01 83.0 4290.0 _CASSSGLVAPGELFF 133 4810 EBV-BLMF1 EBV 0.69 2531 NEG 219 4591 10 EBV BLMF1 GLCTLVAML effector memory T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*02:01 B2M MHCI -1837 chip0420_684768 8.6 10.52 Chip1 T1D_1 T1D _ 6746 4894 EBV-BRLF1 EBV 0.96 1264 EBV-BRLF1 170 4724 8 EBV BRLF1 YVLDHLIVV effector memory T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*02:01 B2M MHCI -1838 chip0420_657495 15.86 11.74 Chip1 T1D_1 T1D TGCGGCCCAGAGGAACCTAACGACTACAAGCTCAGCTTT CGPEEPNDYKLSF TRAV30*01 TRAJ20*01 39.0 2386.0 TGTGCCAGCAGCCCGGGACAGCTATCGAACACCGGGGAGCTGTTTTTT CASSPGQLSNTGELFF TRBV9*01 TRBJ2-2*01 88.0 2782.0 CGPEEPNDYKLSF_CASSPGQLSNTGELFF 4 1769 EBV-BLMF1 EBV 0.5 2531 NEG 164 1605 12 EBV BLMF1 GLCTLVAML effector T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*02:01 B2M MHCI -1839 chip0420_850355 9.72 10.84 Chip1 T1D_1 T1D TGTGCCAGCAGCCCAGTTAGCGGGTCAACCTACGAGCAGTACTTC CASSPVSGSTYEQYF TRBV3-1*01 TRBJ2-7*01 22.0 1095.0 _CASSPVSGSTYEQYF 80 4510 EBV-BLMF1 EBV 1.0 2531 NEG 164 4346 9 EBV BLMF1 GLCTLVAML effector memory T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*02:01 B2M MHCI -1840 chip0420_393491 13.34 6.68 Chip1 T1D_2 T1D TGCAGCGTGGGGACAGGGGGAACTAATGAAAAACTGTTTTTT CSVGTGGTNEKLFF TRBV29-1*01 TRBJ1-4*01 26.0 1464.0 _CSVGTGGTNEKLFF 638 2562 EBV-BLMF1 EBV 0.8 2531 NEG 155 2407 10 EBV BLMF1 GLCTLVAML effector memory T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*02:01 B2M MHCI -1841 chip0420_346779 12.31 8.61 Chip1 T1D_2 T1D TGCAGCGTTGGGGGCAGCTTCTATGGCTACACCTTC CSVGGSFYGYTF TRBV29-1*01 TRBJ1-2*01 48.0 5423.0 _CSVGGSFYGYTF 42 2603 EBV-BLMF1 EBV 0.82 2531 NEG 154 2449 10 EBV BLMF1 GLCTLVAML effector memory T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*02:01 B2M MHCI -1842 chip0420_239970 12.68 6.63 Chip1 T1D_2 T1D TGTGCCAGCAACTTAGCGGGGAACAATGAACAGTTCTTC CASNLAGNNEQFF TRBV9*01 TRBJ2-1*01 17.0 429.0 _CASNLAGNNEQFF 15 4186 EBV-BLMF1 EBV 0.77 2531 NEG 207 3979 10 EBV BLMF1 GLCTLVAML effector memory T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*02:01 B2M MHCI -1843 chip0420_718589 6.18 13.62 Chip1 T1D_1 T1D TGTGGCACTCAAGAGAATGACAGCTGGGGGAAATTGCAGTTT CGTQENDSWGKLQF TRAV30*01 TRAJ24*01 1.0 110.0 TGTGCCAGTAGTGTCGGGGCAGGGGAGGCGCAGTGCTTC CASSVGAGEAQCF TRBV19*01 TRBJ2-5*01 6.0 260.0 CGTQENDSWGKLQF_CASSVGAGEAQCF 1 3528 M1 FLU 0.86 1250 NEG 177 3351 7 InfluenzaA M1 GILGFVFTL transitional T cells between effector and memory populations PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*02:01 B2M MHCI -1844 chip0420_577611 11.24 11.58 Chip1 T1D_1 T1D TGTGCCAGCAGTTACCCAAAGCTGAGGCCTACAATGAGCAGTTCTTC CASSYPKct?EAYNEQFF TRBV6-5*01 TRBJ2-1*01 49.0 1394.0 _CASSYPKct?EAYNEQFF 1 3895 EBV-BLMF1 EBV 0.88 2531 NEG 182 3713 9 EBV BLMF1 GLCTLVAML effector memory T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*02:01 B2M MHCI -1845 chip0420_797274 11.08 7.62 Chip1 T1D_1 T1D TGTGCTACGGACGGGGCTTCCGGATACAGCACCCTCACCTTT CATDGASGYSTLTF TRAV17*01 TRAJ11*01 50.0 2186.0 TGTGCCAGCAGTGTTCAGGGAAACTCCTACGAGCAGTACTTC CASSVQGNSYEQYF TRBV12-3*01,TRBV12-4*01 TRBJ2-7*01 6.0 221.0 CATDGASGYSTLTF_CASSVQGNSYEQYF 1 3975 EBV-LMP2-FLY EBV 0.61 355 EBV-LMP2-FLY 171 3804 6 EBV LMP2 FLYALALLL central memory T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*02:01 B2M MHCI -1846 chip0420_744593 6.87 13.41 Chip1 T1D_1 T1D TGCGCCAGTAGTATAAGATCCACAGATACGCAGTATTTT CASSIRSTDTQYF TRBV19*01 TRBJ2-3*01 15.0 969.0 _CASSIRSTDTQYF 6 4470 M1 FLU 0.81 1250 M1 171 4299 7 InfluenzaA M1 GILGFVFTL transitional T cells between effector and memory populations PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*02:01 B2M MHCI -1847 chip0420_647152 8.55 8.31 Chip1 T1D_1 T1D _ 6746 5770 EBV-BLMF1 EBV 0.68 2531 NEG 160 5610 8 EBV BLMF1 GLCTLVAML effector memory T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*02:01 B2M MHCI -1848 chip0420_818000 -1.08 7.7 Chip1 healthy_2 healthy TGTGCAATGAGCTTATCTAACTTTGGAAATGAGAAATTAACCTTT CAMSLSNFGNEKLTF TRAV12-3*01 TRAJ48*01 54.0 2064.0 CAMSLSNFGNEKLTF_ 16 5816 PGT-178 PGT 0.9 1480 PGT-178 150 5666 3 HomoSapiens PGT LLAGIGTVPI Naive T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*02:01 B2M MHCI -1849 chip0420_56866 12.55 8.09 Chip1 T1D_1 T1D _ 6746 2364 EBV-BLMF1 EBV 0.96 2531 EBV-BLMF1 153 2211 10 EBV BLMF1 GLCTLVAML effector memory T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*02:01 B2M MHCI -1850 chip0420_227055 15.63 9.83 Chip1 T1D_1 T1D TGTGCCAGCAGCACGGGACAGCTATCGAACACCGGGGAGCTGTTTTTT CASSTGQLSNTGELFF TRBV9*01 TRBJ2-2*01 51.0 3281.0 _CASSTGQLSNTGELFF 82 2393 EBV-BLMF1 EBV 0.45 2531 NEG 144 2249 12 EBV BLMF1 GLCTLVAML effector T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*02:01 B2M MHCI -1851 chip0420_108610 8.49 9.26 Chip1 T1D_1 T1D TGCAGTGCCATAGATACATCCGGGACAGGGGGCTACGAGCAGTACTTC CSAIDTSGTGGYEQYF TRBV20-1*01 TRBJ2-7*01 14.0 677.0 _CSAIDTSGTGGYEQYF 5 4180 HCVNS4B-1807-1816 HCV 0.93 74 HCVNS4B-1807-1816 156 4024 8 HCV NS4B LLFNILGGWV effector memory T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*02:01 B2M MHCI -1852 chip0420_490412 -1.92 7.74 Chip1 T1D_1 T1D TGTGTGGTGGACGACTGGGGGAAATTGCAGTTT CVVDDWGKLQF TRAV12-1*01 TRAJ24*01 22.0 2230.0 CVVDDWGKLQF_ 1 5737 PGT-178 PGT 0.62 1480 PGT-178 161 5576 3 HomoSapiens PGT LLAGIGTVPI Naive T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*02:01 B2M MHCI -1853 chip0420_126098 9.71 9.47 Chip1 T1D_2 T1D TGTGCAGAGAGTTACGACGGGTATGCACTCAACTTC CAESYDGYALNF TRAV5*01 TRAJ41*01 35.0 2136.0 CAESYDGYALNF_ 2 4291 EBV-BLMF1 EBV 0.88 2531 NEG 154 4137 8 EBV BLMF1 GLCTLVAML effector memory T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*02:01 B2M MHCI -1854 chip0420_83082 14.89 12.15 Chip1 T1D_1 T1D TGCGGCCCAGAGGAACCTAACGACTACAAGCTCAGCTTT CGPEEPNDYKLSF TRAV30*01 TRAJ20*01 76.0 5031.0 CGPEEPNDYKLSF_ 13 2090 EBV-BLMF1 EBV 0.41 2531 NEG 140 1950 12 EBV BLMF1 GLCTLVAML effector T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*02:01 B2M MHCI -1855 chip0420_754010 11.79 10.55 Chip1 T1D_2 T1D TGTGCCAGCAACTTAGCGGGGAACAATGAGCAGTTCTTC CASNLAGNNEQFF TRBV9*01 TRBJ2-1*01 2.0 109.0 _CASNLAGNNEQFF 15 3181 EBV-BLMF1 EBV 1.0 2531 NEG 179 3002 9 EBV BLMF1 GLCTLVAML effector memory T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*02:01 B2M MHCI -1856 chip0420_192807 15.4 11.3 Chip1 T1D_1 T1D TGTGCCGTGGACCCATGGGGTAACCAGTTCTATTTT CAVDPWGNQFYF TRAV39*01 TRAJ49*01 12.0 1538.0 TGTGCCACCCAACAGGGGAGGGACAGTCAGCCCCAGCATTTT CATQQGRDSQPQHF TRBV28*01 TRBJ1-5*01 75.0 3702.0 CAVDPWGNQFYF_CATQQGRDSQPQHF 16 1934 EBV-BLMF1 EBV 0.62 2531 NEG 153 1781 12 EBV BLMF1 GLCTLVAML effector T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*02:01 B2M MHCI -1857 chip0420_667662 10.52 11.28 Chip1 T1D_2 T1D TGTGCTATGAGAGACGACAGAGATGACAAGATCATCTTT CAMRDDRDDKIIF TRAV3*01 TRAJ30*01 62.0 3904.0 TGTGCCAGCAGCTTAAACGCGGGAGAGTGGTATGGCTACACCTTC CASSLNAGEWYGYTF TRBV11-2*01 TRBJ1-2*01 54.0 2190.0 CAMRDDRDDKIIF_CASSLNAGEWYGYTF 1 2549 EBV-BLMF1 EBV 1.0 2531 NEG 182 2367 9 EBV BLMF1 GLCTLVAML effector memory T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*02:01 B2M MHCI -1858 chip0420_617881 12.06 7.15 Chip1 T1D_2 T1D TGTGCAGAGAAGGCCTGGGGGTTACCAGAACGTTACCTTT CAEKAWgg??gtYQNVTF TRAV5*01 TRAJ13*01 22.0 1638.0 TGCAGCGTGGGGACAGGAGGAACTAATGAAAAACTGTTTTTT CSVGTGGTNEKLFF TRBV29-1*01 TRBJ1-4*01 23.0 1234.0 CAEKAWgg??gtYQNVTF_CSVGTGGTNEKLFF 1 3797 EBV-BLMF1 EBV 0.62 2531 NEG 169 3628 10 EBV BLMF1 GLCTLVAML effector memory T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*02:01 B2M MHCI -1859 chip0420_124390 -0.63 4.55 Chip1 T1D_1 T1D TGTGCCAGCAGCTTAGGACAGGGCGGTTCTGGAAACACCATATATTTT CASSLGQGGSGNTIYF TRBV7-6*01 TRBJ1-3*01 34.0 1465.0 _CASSLGQGGSGNTIYF 1 4317 PGT-178 PGT 0.69 1480 PGT-178 168 4149 5 HomoSapiens PGT LLAGIGTVPI natural killer-like T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*02:01 B2M MHCI -1860 chip0420_482358 13.04 10.41 Chip1 T1D_2 T1D TGTGCCAGTAGGGCCCTCTTGGGAAGCAATCAGCCCCAGCATTTT CASRALLGSNQPQHF TRBV19*01 TRBJ1-5*01 6.0 203.0 _CASRALLGSNQPQHF 8 3912 EBV-BRLF1 EBV 0.92 1264 EBV-BRLF1 160 3752 9 EBV BRLF1 YVLDHLIVV effector memory T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*02:01 B2M MHCI -1861 chip0420_7612 6.34 13.97 Chip1 T1D_1 T1D TGTGCCAGTAGTTCTGGGGCTTATGGCTACACCTTC CASSSGAYGYTF TRBV19*01 TRBJ1-2*01 8.0 864.0 _CASSSGAYGYTF 6 3832 M1 FLU 0.41 1250 M1 155 3677 7 InfluenzaA M1 GILGFVFTL transitional T cells between effector and memory populations PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*02:01 B2M MHCI -1862 chip0420_791864 11.15 10.42 Chip1 T1D_1 T1D TGTGCCAGCAGCCCAGTTAGCGGGTCAACCTACGAGCAGTACTTC CASSPVSGSTYEQYF TRBV3-1*01 TRBJ2-7*01 13.0 646.0 _CASSPVSGSTYEQYF 80 6642 EBV-BLMF1 EBV 0.84 2531 EBV-BLMF1 175 6467 9 EBV BLMF1 GLCTLVAML effector memory T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*02:01 B2M MHCI -1863 chip0420_636857 15.54 9.07 Chip1 T1D_2 T1D TGCAGCGTGGGGACAGGGGGAACTAATGAAAAACTGTTTTTT CSVGTGGTNEKLFF TRBV29-1*01 TRBJ1-4*01 137.0 6700.0 _CSVGTGGTNEKLFF 638 2700 EBV-BLMF1 EBV 0.67 2531 NEG 159 2541 12 EBV BLMF1 GLCTLVAML effector T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*02:01 B2M MHCI -1864 chip0420_337274 10.08 7.18 Chip1 T1D_1 T1D TGTGCCGTGCCGGTGTATGACAAGATCATCTTT CAVPVYDKIIF TRAV8-1*01 TRAJ30*01 34.0 2190.0 TGTGCCAGCAGTCCGGACCAAACTAGCTCCTACAATGAGCAGTTCTTC CASSPDQTSSYNEQFF TRBV27*01 TRBJ2-1*01 48.0 2508.0 CAVPVYDKIIF_CASSPDQTSSYNEQFF 1 3308 EBV-BRLF1 EBV 0.92 1264 EBV-BRLF1 162 3146 10 EBV BRLF1 YVLDHLIVV effector memory T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*02:01 B2M MHCI -1865 chip0420_803902 8.36 10.66 Chip1 T1D_2 T1D TGTGCAGCATACGCAGGCAACTTGCTCACCTTT CAAYAGNLLTF TRAV29/DV5*01 TRAJ39*01 19.0 2048.0 TGCGCCAGCAGGATGGGGGCCGGGGATACGCAGTATTTT CASRMGAGDTQYF TRBV10-2*01 TRBJ2-3*01 14.0 646.0 CAAYAGNLLTF_CASRMGAGDTQYF 2 5053 EBV-BLMF1 EBV 1.0 2531 NEG 151 4902 8 EBV BLMF1 GLCTLVAML effector memory T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*02:01 B2M MHCI -1866 chip0420_823740 10.42 10.78 Chip1 T1D_1 T1D TGCAGCGTCGGCTCCAGAGGAACTAATGAAAAACTGTTTTTC CSVGSRGTNEKLFF TRBV29-1*01 TRBJ1-4*01 21.0 828.0 _CSVGSRGTNEKLFF 283 3166 EBV-BLMF1 EBV 0.56 2531 NEG 168 2998 9 EBV BLMF1 GLCTLVAML effector memory T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*02:01 B2M MHCI -1867 chip0420_649511 8.71 9.07 Chip1 T1D_2 T1D TGTGCAATGAGAGAGTCTCGGGGTAGCAACTATCAGTTAATCTGG CAMRESRGSNYQLIW TRAV14/DV4*01 TRAJ33*01 52.0 2200.0 TGTGCCAGCAGCGTAGAGCCCTCCTTGCTGCATCAGCCCCAGCATTTT CASSVEPSLLHQPQHF TRBV9*01 TRBJ1-5*01 22.0 1343.0 CAMRESRGSNYQLIW_CASSVEPSLLHQPQHF 1 3356 EBV-BLMF1 EBV 0.67 2531 NEG 149 3207 8 EBV BLMF1 GLCTLVAML effector memory T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*02:01 B2M MHCI -1868 chip0420_610919 9.56 8.69 Chip1 T1D_1 T1D TGTGCCAGCAGTTCGGGACAGGTACTTCCCAATGAGCAGTTCTTC CASSSGQVLPNEQFF TRBV2*01 TRBJ2-1*01 20.0 1225.0 _CASSSGQVLPNEQFF 61 4238 EBV-BLMF1 EBV 0.8 2531 NEG 164 4074 8 EBV BLMF1 GLCTLVAML effector memory T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*02:01 B2M MHCI -1869 chip0420_401106 11.55 7.15 Chip1 T1D_2 T1D TGTGCTTCCCTAACCCCGGGGGCTTCCAAGCTAATCTTT CASLTPGASKLIF TRAV8-6*01 TRAJ3*01 29.0 2108.0 CASLTPGASKLIF_ 1 5331 EBV-BLMF1 EBV 0.62 2531 NEG 180 5151 10 EBV BLMF1 GLCTLVAML effector memory T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*02:01 B2M MHCI -1870 chip0420_379360 7.89 13.04 Chip1 T1D_2 T1D TGCGCCAGCAGAGCGGGAGCCGGGGATACGCAGTATTTT CASRAGAGDTQYF TRBV10-2*01 TRBJ2-3*01 27.0 1977.0 _CASRAGAGDTQYF 59 2042 EBV-BLMF1 EBV 0.75 2531 NEG 158 1884 7 EBV BLMF1 GLCTLVAML transitional T cells between effector and memory populations PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*02:01 B2M MHCI -1871 chip0420_483134 8.81 13.73 Chip1 T1D_1 T1D _ 6746 2008 EBV-LMP1-1 EBV 0.6 237 NEG 161 1847 11 EBV LMP1 YLLEMLWRL effector T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*02:01 B2M MHCI -1872 chip0420_112853 -2.55 8.5 Chip1 T1D_1 T1D TGTGCCAGCAGCTCAGGCTACTTTAACACCGGGGAGCTGTTTTTT CASSSGYFNTGELFF TRBV11-2*01 TRBJ2-2*01 16.0 680.0 _CASSSGYFNTGELFF 1 4797 MART1-ALA MART1 0.8 269 MART1-ALA 159 4638 2 HomoSapiens MART1 ALAGIGILTV Naive T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*02:01 B2M MHCI -1873 chip0420_673386 6.12 13.69 Chip1 T1D_1 T1D _ 6746 4939 M1 FLU 0.86 1250 M1 168 4771 7 InfluenzaA M1 GILGFVFTL transitional T cells between effector and memory populations PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*02:01 B2M MHCI -1874 chip0420_484787 14.65 11.61 Chip1 T1D_2 T1D TGCAGCGTGGGGACAGAGGGAACTAATGAAAAACTGTTTTTT CSVGTEGTNEKLFF TRBV29-1*01 TRBJ1-4*01 47.0 2167.0 _CSVGTEGTNEKLFF 1 1768 EBV-BLMF1 EBV 0.59 2531 NEG 151 1617 12 EBV BLMF1 GLCTLVAML effector T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*02:01 B2M MHCI -1875 chip0420_446519 14.49 9.05 Chip1 T1D_2 T1D TGCAGCGTTGGGGGCAGCTTCTATGGCTACACCTTC CSVGGSFYGYTF TRBV29-1*01 TRBJ1-2*01 50.0 3563.0 _CSVGGSFYGYTF 42 2239 EBV-BLMF1 EBV 0.67 2531 NEG 175 2064 12 EBV BLMF1 GLCTLVAML effector T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*02:01 B2M MHCI -1876 chip0420_226288 8.21 10.62 Chip1 T1D_2 T1D TGTGCCAGCAGCCAATCCCCCGGGGGGCTAGCTTTCTTT CASSQSPGGLAFF TRBV14*01 TRBJ1-1*01 6.0 217.0 _CASSQSPGGLAFF 4 4099 EBV-BLMF1 EBV 0.88 2531 NEG 170 3929 8 EBV BLMF1 GLCTLVAML effector memory T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*02:01 B2M MHCI -1877 chip0420_103723 8.68 13.77 Chip1 T1D_1 T1D TGTGCCAGCTCACGGACAGGGTTGAACACTGAAGCTTTCTTT CASSRTGLNTEAFF TRBV18*01 TRBJ1-1*01 38.0 1639.0 _CASSRTGLNTEAFF 3 2861 M1 FLU 1.0 1250 NEG 149 2712 11 InfluenzaA M1 GILGFVFTL effector T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*02:01 B2M MHCI -1878 chip0420_876730 11.35 10.29 Chip1 T1D_1 T1D TGTGCCAGCAGTTCGGGACAGGTACTTCCCAATGAGCAGTTCTTC CASSSGQVLPNEQFF TRBV2*01 TRBJ2-1*01 126.0 7427.0 _CASSSGQVLPNEQFF 61 3931 EBV-BLMF1 EBV 0.6 2531 NEG 138 3793 9 EBV BLMF1 GLCTLVAML effector memory T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*02:01 B2M MHCI -1879 chip0420_696730 16.02 10.95 Chip1 T1D_1 T1D TGCGGCGCCGGCGAACCTAACGACTACACGCTCAGCTTT CGAGEPNDYTLSF TRAV30*01 TRAJ20*01 3.0 290.0 CGAGEPNDYTLSF_ 1 1958 EBV-BLMF1 EBV 0.56 2531 NEG 169 1789 12 EBV BLMF1 GLCTLVAML effector T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*02:01 B2M MHCI -1880 chip0420_345440 6.63 13.16 Chip1 T1D_1 T1D _ 6746 3535 M1 FLU 0.76 1250 M1 153 3382 7 InfluenzaA M1 GILGFVFTL transitional T cells between effector and memory populations PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*02:01 B2M MHCI -1881 chip0420_4858 9.48 7.93 Chip1 T1D_1 T1D TGTGCCAGCAGCCAAAGCCCGGGTGGTACGCAGTATTTT CASSQSPGGTQYF TRBV14*01 TRBJ2-3*01 9.0 361.0 _CASSQSPGGTQYF 94 3555 EBV-BLMF1 EBV 0.58 2531 NEG 161 3394 8 EBV BLMF1 GLCTLVAML effector memory T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*02:01 B2M MHCI -1882 chip0420_575787 15.27 12.63 Chip1 T1D_2 T1D TGTGCCAGCAGCGTAGTAGGCAATGAGCAGTTCTTC CASSVVGNEQFF TRBV9*01 TRBJ2-1*01 16.0 579.0 _CASSVVGNEQFF 5 1692 EBV-BLMF1 EBV 0.8 2531 NEG 171 1521 12 EBV BLMF1 GLCTLVAML effector T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*02:01 B2M MHCI -1883 chip0420_256761 13.53 10.05 Chip1 T1D_1 T1D TGTGCCACCCAACAGGGGAGGGACAGTCAGCCCCAGCATTTT CATQQGRDSQPQHF TRBV28*01 TRBJ1-5*01 20.0 423.0 _CATQQGRDSQPQHF 52 2769 EBV-BLMF1 EBV 0.75 2531 NEG 153 2616 12 EBV BLMF1 GLCTLVAML effector T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*02:01 B2M MHCI -1884 chip0420_189924 13.17 7.34 Chip1 T1D_2 T1D TGTGCTCTACAAAACACCGCCAAGCTCATCTTT CALQNTAKLIF TRAV16*01 TRAJ34*01 6.0 441.0 TGTGCCAGCAGTTTATCAGTACTCTCCTACAATGAGCAGTTCTTC CASSLSVLSYNEQFF TRBV27*01 TRBJ2-1*01 31.0 3197.0 CALQNTAKLIF_CASSLSVLSYNEQFF 1 4035 EBV-BRLF1 EBV 0.92 1264 EBV-BRLF1 182 3853 10 EBV BRLF1 YVLDHLIVV effector memory T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*02:01 B2M MHCI -1885 chip0420_87818 4.67 10.91 Chip1 T1D_1 T1D TGTGCCACTTTTCCGGACGGCTCCTACGAGCAGTACTTC CATFPDGSYEQYF TRBV28*01 TRBJ2-7*01 56.0 3877.0 _CATFPDGSYEQYF 6 3807 EBV-LMP1-1 EBV 0.89 237 NEG 165 3642 6 EBV LMP1 YLLEMLWRL central memory T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*02:01 B2M MHCI -1886 chip0420_82127 9.6 9.03 Chip1 T1D_1 T1D TGTGCCAGCAGCCAAAGCCCGGGTGGTACGCAGTATTTT CASSQSPGGTQYF TRBV14*01 TRBJ2-3*01 21.0 1297.0 _CASSQSPGGTQYF 94 4696 EBV-BLMF1 EBV 0.62 2531 NEG 146 4550 8 EBV BLMF1 GLCTLVAML effector memory T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*02:01 B2M MHCI -1887 chip0420_757943 11.2 10.98 Chip1 T1D_1 T1D TGCAGCGTCGGCTCCAGGGGAACTAATGAAAAACTGTTTTTT CSVGSRGTNEKLFF TRBV29-1*01 TRBJ1-4*01 135.0 7420.0 _CSVGSRGTNEKLFF 283 3662 EBV-BLMF1 EBV 0.67 2531 NEG 185 3477 9 EBV BLMF1 GLCTLVAML effector memory T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*02:01 B2M MHCI -1888 chip0420_704715 -3.37 12.23 Chip1 T1D_2 T1D TGTGCCAGCAGCTCGGCAGTACTAGCGGGGGGACACAATGAGCAGTTCTTC CASSSAVLAGGHNEQFF TRBV5-6*01 TRBJ2-1*01 10.0 206.0 _CASSSAVLAGGHNEQFF 1 3540 PGT-178 PGT 0.55 1480 NEG 156 3384 1 HomoSapiens PGT LLAGIGTVPI Naive T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*02:01 B2M MHCI -1889 chip0420_440751 10.82 10.57 Chip1 T1D_1 T1D TGCAGCGTCGGCTCCAGGGGAACTAATGAAAAACTGTTTTTT CSVGSRGTNEKLFF TRBV29-1*01 TRBJ1-4*01 151.0 8271.0 _CSVGSRGTNEKLFF 283 2810 EBV-BLMF1 EBV 0.73 2531 NEG 177 2633 9 EBV BLMF1 GLCTLVAML effector memory T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*02:01 B2M MHCI -1890 chip0420_524660 -2.84 8.23 Chip1 T1D_1 T1D TGTGCCAGCAGCTTAGGTTATCTGGGTGACTATGGCTACACCTTC CASSLGYLGDYGYTF TRBV7-2*01 TRBJ1-2*01 49.0 2745.0 _CASSLGYLGDYGYTF 1 5955 PGT-178 PGT 0.41 1480 PGT-178 138 5817 2 HomoSapiens PGT LLAGIGTVPI Naive T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*02:01 B2M MHCI -1891 chip0420_376844 10.21 7.08 Chip1 T1D_2 T1D TGTGCAGCGTATGCAGGCAACATGCTCACCTTT CAAYAGNMLTF TRAV29/DV5*01 TRAJ39*01 29.0 2402.0 TGCGCCAGCAGAGCGGGAGCCGGGGATACGCAGTATTTT CASRAGAGDTQYF TRBV10-2*01 TRBJ2-3*01 104.0 5817.0 CAAYAGNMLTF_CASRAGAGDTQYF 18 3817 EBV-BLMF1 EBV 1.0 2531 NEG 157 3660 10 EBV BLMF1 GLCTLVAML effector memory T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*02:01 B2M MHCI -1892 chip0420_19889 8.23 13.3 Chip1 T1D_1 T1D TGTGCCAGTAGTATCAGGTCGAACACTGAAGCTTTCTTT CASSIRSNTEAFF TRBV19*01 TRBJ1-1*01 25.0 921.0 _CASSIRSNTEAFF 1 2888 M1 FLU 0.45 1250 M1 146 2742 7 InfluenzaA M1 GILGFVFTL transitional T cells between effector and memory populations PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*02:01 B2M MHCI -1893 chip0420_665500 12.54 10.53 Chip1 T1D_2 T1D TGCAGCGTGGGGACAGGGGGAACTAATGAAAAACTGTTTTTT CSVGTGGTNEKLFF TRBV29-1*01 TRBJ1-4*01 153.0 7978.0 _CSVGTGGTNEKLFF 638 3327 EBV-BLMF1 EBV 0.5 2531 NEG 184 3143 9 EBV BLMF1 GLCTLVAML effector memory T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*02:01 B2M MHCI -1894 chip0420_237429 -2.13 8.57 Chip1 T1D_1 T1D _ 6746 6014 PGT-178 PGT 0.83 1480 PGT-178 156 5858 3 HomoSapiens PGT LLAGIGTVPI Naive T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*02:01 B2M MHCI -1895 chip0420_129901 11.34 8.04 Chip1 T1D_1 T1D TGCAGCGTCGGCTCCAGGGGAACTAATGAAAAACTGTTTTTT CSVGSRGTNEKLFF TRBV29-1*01 TRBJ1-4*01 64.0 3465.0 _CSVGSRGTNEKLFF 283 3739 EBV-BLMF1 EBV 0.5 2531 NEG 153 3586 10 EBV BLMF1 GLCTLVAML effector memory T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*02:01 B2M MHCI -1896 chip0420_622552 8.9 8.42 Chip1 T1D_1 T1D TGTGCTCTCTATAACACCGACAAGCTCATCTTT CALYNTDKLIF TRAV9-2*01 TRAJ34*01 30.0 2045.0 TGTGCCACCCAACAGGGGAGGGACAGTCAGCCCCAGCATTTT CATQQGRDSQPQHF TRBV28*01 TRBJ1-5*01 2.0 57.0 CALYNTDKLIF_CATQQGRDSQPQHF 1 5309 EBV-BLMF1 EBV 0.61 2531 EBV-BLMF1 151 5158 8 EBV BLMF1 GLCTLVAML effector memory T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*02:01 B2M MHCI -1897 chip0420_759880 15.28 9.94 Chip1 T1D_2 T1D TGCAGCGTGTGCATACTAGCCCAGAATTACAATGAGCAGTTCTTC CSVCILAQNYNEQFF TRBV29-1*01 TRBJ2-1*01 138.0 9080.0 _CSVCILAQNYNEQFF 88 2759 PGT-178 PGT 0.4 1480 NEG 175 2584 12 HomoSapiens PGT LLAGIGTVPI effector T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*02:01 B2M MHCI -1898 chip0420_575003 6.17 14.15 Chip1 T1D_1 T1D TGTGCCAGTCGTGGCAGGGCGGGAGGGACCCAGTACTGC CASRGRAGGTQYC TRBV19*01 TRBJ2-5*01 5.0 240.0 _CASRGRAGGTQYC 1 5088 M1 FLU 0.8 1250 M1 144 4944 7 InfluenzaA M1 GILGFVFTL transitional T cells between effector and memory populations PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*02:01 B2M MHCI -1899 chip0420_400776 5.52 9.09 Chip1 T1D_2 T1D TGTGCCAGCAGTCCCCAAGGGGGGGCCAGTGAAGCTTTCTTT CASSPQGGASEAFF TRBV6-1*01 TRBJ1-1*01 11.0 799.0 _CASSPQGGASEAFF 3 4994 EBV-LMP2-FLY EBV 0.82 355 NEG 180 4814 6 EBV LMP2 FLYALALLL central memory T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*02:01 B2M MHCI -1900 chip0420_723954 9.12 10.65 Chip1 T1D_1 T1D TGCAGCGTCGGCTCCAGGGGAACTAATGAAAAACTGTTTTTT CSVGSRGTNEKLFF TRBV29-1*01 TRBJ1-4*01 123.0 6101.0 _CSVGSRGTNEKLFF 283 3524 EBV-BLMF1 EBV 0.42 2531 NEG 164 3360 9 EBV BLMF1 GLCTLVAML effector memory T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*02:01 B2M MHCI -1901 chip0420_415228 9.9 9.57 Chip1 T1D_1 T1D TGCAGTGCTAACGACCACACCTACAATGAGCAGTTCTTC CSANDHTYNEQFF TRBV20-1*01 TRBJ2-1*01 12.0 469.0 _CSANDHTYNEQFF 2 3538 EBV-BRLF1 EBV 0.86 1264 EBV-BRLF1 161 3377 8 EBV BRLF1 YVLDHLIVV effector memory T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*02:01 B2M MHCI -1902 chip0420_317931 14.12 12.43 Chip1 T1D_1 T1D TGCAGCGTCGGCTCCAGGGGAACTAATGAAAAACTGTTTTTT CSVGSRGTNEKLFF TRBV29-1*01 TRBJ1-4*01 103.0 5256.0 _CSVGSRGTNEKLFF 283 2578 EBV-BLMF1 EBV 0.88 2531 NEG 153 2425 12 EBV BLMF1 GLCTLVAML effector T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*02:01 B2M MHCI -1903 chip0420_87507 13.17 10.7 Chip1 T1D_1 T1D TGTGCCATCAGTGAGGGGACGCTGAGCTCCTACAATGAGCAGTTCTTC CAISEGTLSSYNEQFF TRAV14/DV4*01 TRAJ50*01 2.0 4.0 TGTGCCATCAGTGAGGGGACGCTGAGCTCCTACAATGAGCAGTTCTTC CAISEGTLSSYNEQFF TRBV10-3*01 TRBJ2-1*01 60.0 3816.0 CAISEGTLSSYNEQFF_CAISEGTLSSYNEQFF 1 3747 EBV-BRLF1 EBV 0.92 1264 NEG 155 3592 9 EBV BRLF1 YVLDHLIVV effector memory T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*02:01 B2M MHCI -1904 chip0420_878559 16.04 10.82 Chip1 T1D_1 T1D TGTGCCAGCAGCCCAGTTAGCGGGTCAGCCTGCGAGCGGTTCTTC CASSPVSGSACERFF TRAV29/DV5*01 TRAJ40*01 1.0 10.0 TGTGCCAGCAGCCCAGTTAGCGGGTCAACCTACGAGCAGTACTTC CASSPVSGSTYEQYF TRBV3-1*01 TRBJ2-7*01 15.0 785.0 CASSPVSGSACERFF_CASSPVSGSTYEQYF 1 2082 EBV-BLMF1 EBV 0.84 2531 EBV-BLMF1 160 1922 12 EBV BLMF1 GLCTLVAML effector T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*02:01 B2M MHCI -1905 chip0420_772400 -3.49 11.61 Chip1 T1D_1 T1D _ 6746 4862 GAG-77-86 HIV 0.73 15 GAG-77-86 133 4729 1 HIV-1 GAG SLYNTVATLY Naive T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*02:01 B2M MHCI -1906 chip0420_710756 -0.25 6.5 Chip1 T1D_1 T1D TGTGCCAGCAGTACTCTAGCGGGGGGGACAGATACGCAGTATTTT CASSTLAGGTDTQYF TRBV6-2*01,TRBV6-3*01 TRBJ2-3*01 19.0 832.0 _CASSTLAGGTDTQYF 1 5165 PGT-178 PGT 0.53 1480 PGT-178 179 4986 3 HomoSapiens PGT LLAGIGTVPI Naive T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*02:01 B2M MHCI -1907 chip0420_701670 11.8 11.96 Chip1 T1D_1 T1D _ 6746 3031 EBV-BLMF1 EBV 0.83 2531 NEG 142 2889 11 EBV BLMF1 GLCTLVAML effector T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*02:01 B2M MHCI -1908 chip0420_769060 9.98 8.47 Chip1 T1D_2 T1D TGCACCAGCAGAGCGGGCGCCGGGGATACGCAGTATTTT CTSRAGAGDTQYF TRBV10-2*01 TRBJ2-3*01 27.0 1971.0 _CTSRAGAGDTQYF 1 3122 EBV-BLMF1 EBV 0.71 2531 NEG 174 2948 8 EBV BLMF1 GLCTLVAML effector memory T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*02:01 B2M MHCI -1909 chip0420_713886 15.8 11.08 Chip1 T1D_2 T1D TGCAGCTCGCAGGAGGGCGGCTATGGCTACACCTTC CSSQEGGYGYTF TRBV29-1*01 TRBJ1-2*01 105.0 8844.0 _CSSQEGGYGYTF 11 1729 EBV-BLMF1 EBV 0.89 2531 NEG 154 1575 12 EBV BLMF1 GLCTLVAML effector T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*02:01 B2M MHCI -1910 chip0420_771569 11.79 10.68 Chip1 T1D_2 T1D TGCAGCGTGGGGCCAGGGGGGGCTAGTGAAGAACTGTTTTTT CSVGPGGASEELFF TRBV29-1*01 TRBJ1-4*01 8.0 399.0 _CSVGPGGASEELFF 1 2702 EBV-BLMF1 EBV 1.0 2531 NEG 155 2547 9 EBV BLMF1 GLCTLVAML effector memory T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*02:01 B2M MHCI -1911 chip0420_407788 9.72 9.95 Chip1 T1D_1 T1D _ 6746 6481 EBV-BLMF1 EBV 0.78 2531 NEG 164 6317 9 EBV BLMF1 GLCTLVAML effector memory T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*02:01 B2M MHCI -1912 chip0420_651986 14.76 10.56 Chip1 T1D_1 T1D TGTGCCGTGAAGGACACCGACAAGCTCATCTTT CAVKDTDKLIF TRAV8-1*01 TRAJ34*01 14.0 1400.0 CAVKDTDKLIF_ 56 3300 EBV-BRLF1 EBV 0.86 1264 EBV-BRLF1 170 3130 12 EBV BRLF1 YVLDHLIVV effector T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*02:01 B2M MHCI -1913 chip0420_631404 12.06 7.96 Chip1 T1D_2 T1D TGTGTGGTGAACAAAGGGGAAACACCAATGCAGGCAAGTCAACCTTT CVVNKGEac?TNAGKSTF TRAV12-1*01 TRAJ27*01 45.0 2141.0 CVVNKGEac?TNAGKSTF_ 1 2394 EBV-BRLF1 EBV 0.87 1264 EBV-BRLF1 144 2250 10 EBV BRLF1 YVLDHLIVV effector memory T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*02:01 B2M MHCI -1914 chip0420_629789 -2.04 11.93 Chip1 T1D_1 T1D _ 6746 3720 PGT-178 PGT 0.82 1480 PGT-178 155 3565 1 HomoSapiens PGT LLAGIGTVPI Naive T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*02:01 B2M MHCI -1915 chip0420_358224 5.19 9.66 Chip1 T1D_1 T1D TGTGCCACTTTTCCGGCCGGCTCCTACGAGCAGTACTTC CATFPAGSYEQYF TRBV28*01 TRBJ2-7*01 4.0 168.0 _CATFPAGSYEQYF 1 4086 EBV-LMP1-1 EBV 0.89 237 EBV-LMP1-1 168 3918 6 EBV LMP1 YLLEMLWRL central memory T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*02:01 B2M MHCI -1916 chip0420_347942 -4.13 9.25 Chip1 T1D_1 T1D _ 6746 7227 GP160-311-320 HIV 0.8 109 GP160-311-320 138 7089 2 HIV-1 GP160 RGPGRAFVTI Naive T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*02:01 B2M MHCI -1917 chip0420_120319 -0.86 7.55 Chip1 T1D_1 T1D TGTGCCTGGCGGCGGGAGGGAGTAGAGACCCAGTACTTC CAWRREGVETQYF TRBV30*01 TRBJ2-5*01 21.0 1352.0 _CAWRREGVETQYF 1 7813 PGT-178 PGT 0.81 1480 PGT-178 174 7639 3 HomoSapiens PGT LLAGIGTVPI Naive T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*02:01 B2M MHCI -1918 chip0420_876765 -2.87 10.52 Chip1 T1D_1 T1D _ 6746 5689 PGT-178 PGT 0.46 1480 NEG 140 5549 4 HomoSapiens PGT LLAGIGTVPI Naive T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*02:01 B2M MHCI -1919 chip0420_529332 10.87 10.67 Chip1 T1D_2 T1D TGCAGCGTGGGGACAGGGGGAACTAATGAAAAACTGTTTTTT CSVGTGGTNEKLFF TRBV29-1*01 TRBJ1-4*01 58.0 2631.0 _CSVGTGGTNEKLFF 638 3548 EBV-BLMF1 EBV 0.9 2531 NEG 193 3355 9 EBV BLMF1 GLCTLVAML effector memory T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*02:01 B2M MHCI -1920 chip0420_65079 -3.1 12.64 Chip1 T1D_1 T1D TGTGCCAGCAGCTCCACCTCTTTGACAGGGTCGTACGAGCAGTACTTC CASSSTSLTGSYEQYF TRBV11-2*01 TRBJ2-7*01 1.0 73.0 _CASSSTSLTGSYEQYF 1 4393 GP160-311-320 HIV 0.47 109 NEG 127 4266 1 HIV-1 GP160 RGPGRAFVTI Naive T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*02:01 B2M MHCI -1921 chip0420_765622 5.53 13.04 Chip1 T1D_1 T1D TGTGCCAGTAGTATAAATGGGGGCCGGAGGGATGGCTACACCTTC CASSINGGRRDGYTF TRBV19*01 TRBJ1-2*01 11.0 579.0 _CASSINGGRRDGYTF 32 7443 M1 FLU 0.84 1250 M1 146 7297 7 InfluenzaA M1 GILGFVFTL transitional T cells between effector and memory populations PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*02:01 B2M MHCI -1922 chip0420_546593 13.74 9.67 Chip1 T1D_1 T1D _ 6746 4264 EBV-BRLF1 EBV 1.0 1264 NEG 141 4123 12 EBV BRLF1 YVLDHLIVV effector T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*02:01 B2M MHCI -1923 chip0420_878734 14.92 10.73 Chip1 T1D_2 T1D TGTGCAGAGAGTACTTCGGGAGGAAAGCTTATCTTC CAESTSGGKLIF TRAV5*01 TRAJ23*01 32.0 2117.0 TGCAGCGTGGGGACAGGGGGAACTAATGAAAAACTGTTTTTT CSVGTGGTNEKLFF TRBV29-1*01 TRBJ1-4*01 5.0 153.0 CAESTSGGKLIF_CSVGTGGTNEKLFF 107 3210 EBV-BLMF1 EBV 0.6 2531 NEG 167 3043 12 EBV BLMF1 GLCTLVAML effector T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*02:01 B2M MHCI -1924 chip0420_174468 15.91 10.98 Chip1 T1D_2 T1D TGTGCCACCAGTGATCCGCTCCATTGGGGCTACACCTTC CATSDPLHWGYTF TRBV24-1*01 TRBJ1-2*01 24.0 1623.0 _CATSDPLHWGYTF 1 2138 PGT-178 PGT 0.77 1480 PGT-178 139 1999 12 HomoSapiens PGT LLAGIGTVPI effector T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*02:01 B2M MHCI -1925 chip0420_835679 13.33 13.32 Chip1 T1D_2 T1D _ 6746 1175 EBV-BRLF1 EBV 0.93 1264 NEG 167 1008 11 EBV BRLF1 YVLDHLIVV effector T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*02:01 B2M MHCI -1926 chip0420_509874 14.19 7.66 Chip1 T1D_1 T1D _ 6746 2492 EBV-BLMF1 EBV 0.67 2531 NEG 167 2325 10 EBV BLMF1 GLCTLVAML effector memory T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*02:01 B2M MHCI -1927 chip0420_281286 12.18 6.72 Chip1 T1D_2 T1D _ 6746 3247 EBV-BRLF1 EBV 1.0 1264 EBV-BRLF1 170 3077 10 EBV BRLF1 YVLDHLIVV effector memory T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*02:01 B2M MHCI -1928 chip0420_351631 13.04 10.16 Chip1 T1D_2 T1D TGCAGCGTGGGGACAAGGGGAACTAATGAAAAACTGTTTTTT CSVGTRGTNEKLFF TRBV29-1*01 TRBJ1-4*01 37.0 1914.0 _CSVGTRGTNEKLFF 3 3307 EBV-BLMF1 EBV 0.45 2531 NEG 161 3146 9 EBV BLMF1 GLCTLVAML effector memory T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*02:01 B2M MHCI -1929 chip0420_170593 9.89 11.08 Chip1 T1D_2 T1D TGTGTGGTGAACGGCAGGGATAGCAGCTATAAATTGATCTTC CVVNGRDSSYKLIF TRAV12-1*01 TRAJ12*01 7.0 388.0 TGTGCCAGCAGCTCGGGACTAGTCGCCCCCGGGGAGCTGTTTTTT CASSSGLVAPGELFF TRBV2*01 TRBJ2-2*01 54.0 2997.0 CVVNGRDSSYKLIF_CASSSGLVAPGELFF 98 4688 EBV-BLMF1 EBV 0.75 2531 NEG 154 4534 9 EBV BLMF1 GLCTLVAML effector memory T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*02:01 B2M MHCI -1930 chip0420_16669 10.09 10.9 Chip1 T1D_2 T1D TGTGCAGCGTATGCAGGCAACATGCTCACCTTT CAAYAGNMLTF TRAV29/DV5*01 TRAJ39*01 19.0 2030.0 TGCGCCAGCAGAGCGGGAGCCGGGGATACGCAGTATTTT CASRAGAGDTQYF TRBV10-2*01 TRBJ2-3*01 31.0 2216.0 CAAYAGNMLTF_CASRAGAGDTQYF 18 3444 EBV-BLMF1 EBV 1.0 2531 NEG 172 3272 9 EBV BLMF1 GLCTLVAML effector memory T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*02:01 B2M MHCI -1931 chip0420_148461 8.82 8.99 Chip1 T1D_1 T1D _ 6746 5195 EBV-BLMF1 EBV 0.85 2531 EBV-BLMF1 146 5049 8 EBV BLMF1 GLCTLVAML effector memory T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*02:01 B2M MHCI -1932 chip0420_258557 9.85 8.49 Chip1 T1D_2 T1D TGTGCAGAGAGTACTTCGGGAGGAAAGCTTATCTCC CAESTSGGKLIS TRAV5*01 TRAJ23*01 57.0 4115.0 TGCAGCGTGGGGACAGGGGGAACTAATGAAAAACTGTTTTTT CSVGTGGTNEKLFF TRBV29-1*01 TRBJ1-4*01 101.0 5117.0 CAESTSGGKLIS_CSVGTGGTNEKLFF 1 3809 EBV-BLMF1 EBV 0.5 2531 NEG 174 3635 8 EBV BLMF1 GLCTLVAML effector memory T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*02:01 B2M MHCI -1933 chip0420_503430 9.69 11.02 Chip1 T1D_2 T1D TGTGCAGAGAGTACTTCGGGAGGAAGGCTTATCTTC CAESTSGGRLIF TRAV5*01 TRAJ23*01 29.0 2113.0 TGCAGCGTGGGGACAGGGGGAACTAATGAAAAACTGTTTTTT CSVGTGGTNEKLFF TRBV29-1*01 TRBJ1-4*01 80.0 3481.0 CAESTSGGRLIF_CSVGTGGTNEKLFF 5 3403 EBV-BLMF1 EBV 0.45 2531 NEG 170 3233 9 EBV BLMF1 GLCTLVAML effector memory T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*02:01 B2M MHCI -1934 chip0420_778505 10.05 11.31 Chip1 T1D_2 T1D _ 6746 2757 EBV-BLMF1 EBV 0.62 2531 NEG 163 2594 9 EBV BLMF1 GLCTLVAML effector memory T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*02:01 B2M MHCI -1935 chip0420_871047 -2.58 7.98 Chip1 T1D_1 T1D TGTGCAATGAGCCGATCTAACTTTGGAAATGAGAAATTAACCTTT CAMSRSNFGNEKLTF TRAV12-3*01 TRAJ48*01 53.0 2040.0 TGTGCCAGCAGCAGCCCCGGACTAGCGGGGGGGCCGGACACCGGGGAGCTGTTTTTT CASSSPGLAGGPDTGELFF TRBV11-1*01 TRBJ2-2*01 24.0 889.0 CAMSRSNFGNEKLTF_CASSSPGLAGGPDTGELFF 1 5943 PGT-178 PGT 0.7 1480 PGT-178 154 5789 2 HomoSapiens PGT LLAGIGTVPI Naive T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*02:01 B2M MHCI -1936 chip0420_684363 9.59 7.6 Chip1 T1D_1 T1D TGTGCAGCAAGCCTATGAGAAGTGGAGGTAGCAACTATAAACTGACATTT CAASL*EVg?aGSNYKLTF TRAV23/DV6*01 TRAJ53*01 1.0 28.0 TGCAGCGTCGGCTCCAGGGGAACTAATGAAAAACTGTTTTTT CSVGSRGTNEKLFF TRBV29-1*01 TRBJ1-4*01 46.0 2007.0 CAASL*EVg?aGSNYKLTF_CSVGSRGTNEKLFF 1 4904 EBV-BLMF1 EBV 0.8 2531 NEG 180 4724 8 EBV BLMF1 GLCTLVAML effector memory T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*02:01 B2M MHCI -1937 chip0420_575759 6.4 12.36 Chip1 T1D_1 T1D _ 6746 4452 M1 FLU 0.74 1250 M1 153 4299 7 InfluenzaA M1 GILGFVFTL transitional T cells between effector and memory populations PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*02:01 B2M MHCI -1938 chip0420_24985 -0.63 8.82 Chip1 T1D_1 T1D TGCAGTGCTCCCAGCGGAAACGGATACAATGAGCAGTTCTTC CSAPSGNGYNEQFF TRBV20-1*01 TRBJ2-1*01 27.0 2091.0 _CSAPSGNGYNEQFF 1 6986 PGT-178 PGT 0.66 1480 PGT-178 136 6850 4 HomoSapiens PGT LLAGIGTVPI Naive T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*02:01 B2M MHCI -1939 chip0420_776235 13.55 11.61 Chip1 T1D_2 T1D TGCAGCGTAGGGACAGGGGGAACTAATGAAAAACTGTTTTTT CSVGTGGTNEKLFF TRBV29-1*01 TRBJ1-4*01 34.0 1667.0 _CSVGTGGTNEKLFF 638 1793 EBV-BLMF1 EBV 0.58 2531 NEG 163 1630 12 EBV BLMF1 GLCTLVAML effector T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*02:01 B2M MHCI -1940 chip0420_821731 15.56 9.29 Chip1 T1D_1 T1D TGTGCTCTCTATAACACCGACAAGCTCATCTTT CALYNTDKLIF TRAV9-2*01 TRAJ34*01 2.0 35.0 TGTGCCAGCAGCCCAGTTAGCGGGTCAACCTACGAGCAGTACTTC CASSPVSGSTYEQYF TRBV3-1*01 TRBJ2-7*01 20.0 1537.0 CALYNTDKLIF_CASSPVSGSTYEQYF 15 2532 EBV-BLMF1 EBV 0.93 2531 NEG 175 2357 12 EBV BLMF1 GLCTLVAML effector T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*02:01 B2M MHCI -1941 chip0420_611238 14.56 10.05 Chip1 T1D_1 T1D TGTGCCAGCAGCACGGGACAGCTATCGAACACCGGGGAGCTGTTTTTT CASSTGQLSNTGELFF TRBV9*01 TRBJ2-2*01 1.0 34.0 _CASSTGQLSNTGELFF 82 3033 EBV-BLMF1 EBV 0.67 2531 NEG 147 2886 12 EBV BLMF1 GLCTLVAML effector T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*02:01 B2M MHCI -1942 chip0420_366488 -3.85 9.96 Chip1 T1D_1 T1D TGTGCCAGACCCCTGGCCTGGAATACCGGGGAGCTGTTTTTT CARPLAWNTGELFF TRBV28*01 TRBJ2-2*01 34.0 1754.0 _CARPLAWNTGELFF 1 5551 GAG-433-442 HIV 0.64 19 NEG 152 5399 2 HIV-1 GAG FLGKIWPSYK Naive T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*02:01 B2M MHCI -1943 chip0420_136935 12.0 7.96 Chip1 T1D_2 T1D TGTGCAGAGGATAACAATGCCAGACTCATGTTT CAEDNNARLMF TRAV5*01 TRAJ31*01 1.0 11.0 TGCAGCGTTGACCAAAGGACAGGGCAAAAGAAGAACTATGGCTACACCTTC CSVDQRTGQKKNYGYTF TRBV29-1*01 TRBJ1-2*01 129.0 6377.0 CAEDNNARLMF_CSVDQRTGQKKNYGYTF 3 2369 EBV-BLMF1 EBV 0.9 2531 NEG 188 2181 10 EBV BLMF1 GLCTLVAML effector memory T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*02:01 B2M MHCI -1944 chip0420_24256 8.15 10.23 Chip1 tet_neg TGTGCCAGCAGCCCAGTTAGCGGGTCAACCCACGAGCAGTACTTC CASSPVSGSTHEQYF TRBV3-1*01 TRBJ2-7*01 23.0 1765.0 _CASSPVSGSTHEQYF 1 3364 EBV-BLMF1 EBV 0.67 2531 NEG 155 3209 8 EBV BLMF1 GLCTLVAML effector memory T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*02:01 B2M MHCI -1945 chip0420_734077 12.65 10.3 Chip1 T1D_1 T1D TGCAGCGTCGGCTCCAGGGGAACTAATGAAAAACTGTTTTTT CSVGSRGTNEKLFF TRBV29-1*01 TRBJ1-4*01 87.0 4340.0 _CSVGSRGTNEKLFF 283 3777 EBV-BLMF1 EBV 0.57 2531 NEG 153 3624 9 EBV BLMF1 GLCTLVAML effector memory T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*02:01 B2M MHCI -1946 chip0420_694491 -2.47 15.34 Chip1 T1D_1 T1D TGTGCCAGTAGTAGCCCCGGGACAGGGACCTACGAGCAGTACTTC CASSSPGTGTYEQYF TRBV19*01 TRBJ2-7*01 21.0 665.0 _CASSSPGTGTYEQYF 1 1472 MART1-ALA MART1 0.44 269 NEG 137 1335 1 HomoSapiens MART1 ALAGIGILTV Naive T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*02:01 B2M MHCI -1947 chip0420_658987 10.57 11.21 Chip1 T1D_1 T1D TATGCCAGCAGTCCGCGGTTGTGGCAAGAGACCCAGTACTTC YASSPRLWQETQYF TRBV27*01 TRBJ2-5*01 6.0 470.0 _YASSPRLWQETQYF 1 5214 PPI-29-38 INS 0.69 6 PPI-29-38 161 5053 9 HomoSapiens PPI HLCGSHLVEA effector memory T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*02:01 B2M MHCI -1948 chip0420_446114 9.54 8.3 Chip1 T1D_2 T1D _ 6746 3224 EBV-BLMF1 EBV 0.6 2531 NEG 179 3045 8 EBV BLMF1 GLCTLVAML effector memory T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*02:01 B2M MHCI -1949 chip0420_179887 11.79 6.85 Chip1 T1D_2 T1D TGCAGCGTGGGGACAGGGGGAACTAATGAAAAACTGTTTTTT CSVGTGGTNEKLFF TRBV29-1*01 TRBJ1-4*01 31.0 1645.0 _CSVGTGGTNEKLFF 638 3779 EBV-BLMF1 EBV 0.44 2531 NEG 163 3616 10 EBV BLMF1 GLCTLVAML effector memory T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*02:01 B2M MHCI -1950 chip0420_792400 11.98 10.37 Chip1 T1D_2 T1D TGCGCCAGCAGTCAATCGAGAGGGTCGCTCTGGGATACGCAGTATTTT CASSQSRGSLWDTQYF TRBV4-3*01 TRBJ2-3*01 26.0 1191.0 _CASSQSRGSLWDTQYF 21 3798 EBV-BRLF1 EBV 0.92 1264 EBV-BRLF1 154 3644 9 EBV BRLF1 YVLDHLIVV effector memory T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*02:01 B2M MHCI -1951 chip0420_564124 14.66 8.8 Chip1 T1D_1 T1D _ 6746 2386 EBV-BRLF1 EBV 0.88 1264 NEG 151 2235 12 EBV BRLF1 YVLDHLIVV effector T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*02:01 B2M MHCI -1952 chip0420_587061 8.07 10.0 Chip1 T1D_1 T1D TGTGCTGTGGTCTCAAATTCCGGGTATGCACTCAACTTC CAVVSNSGYALNF TRAV21*01,TRAV12-2*01 TRAJ41*01 41.0 2353.0 CAVVSNSGYALNF_ 4 4417 EBV-BLMF1 EBV 0.73 2531 NEG 159 4258 8 EBV BLMF1 GLCTLVAML effector memory T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*02:01 B2M MHCI -1953 chip0420_384395 -2.53 10.24 Chip1 T1D_1 T1D _ 6746 4089 PGT-178 PGT 0.84 1480 PGT-178 146 3943 3 HomoSapiens PGT LLAGIGTVPI Naive T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*02:01 B2M MHCI -1954 chip0420_322066 10.86 7.32 Chip1 T1D_2 T1D TGTGCAGCGTATGCAGGCAACATGCTCACCTTT CAAYAGNMLTF TRAV29/DV5*01 TRAJ39*01 14.0 2034.0 TGCGCCAGCAGAGCGGGAGCCGGGGATACGCAGTATTTT CASRAGAGDTQYF TRBV10-2*01 TRBJ2-3*01 13.0 814.0 CAAYAGNMLTF_CASRAGAGDTQYF 18 3534 EBV-BLMF1 EBV 0.67 2531 NEG 178 3356 10 EBV BLMF1 GLCTLVAML effector memory T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*02:01 B2M MHCI -1955 chip0420_170013 15.13 10.75 Chip1 T1D_2 T1D TGTGCTCTAAAAAACACCGACAAGCTCATCTTT CALKNTDKLIF TRAV16*01 TRAJ34*01 29.0 2316.0 TGTGCCAGCAGTTTATCAGTACTCTCCTACAATGAGCAGTTCTTC CASSLSVLSYNEQFF TRBV27*01 TRBJ2-1*01 31.0 1631.0 CALKNTDKLIF_CASSLSVLSYNEQFF 3 2430 EBV-BRLF1 EBV 0.97 1264 EBV-BRLF1 148 2282 12 EBV BRLF1 YVLDHLIVV effector T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*02:01 B2M MHCI -1956 chip0420_146189 8.87 8.15 Chip1 T1D_2 T1D TGTGCCAGCAGCTCGGGACTAGTCGCCCCCGGGGAGCTGTTTTTT CASSSGLVAPGELFF TRBV2*01 TRBJ2-2*01 59.0 3005.0 _CASSSGLVAPGELFF 133 4065 EBV-BLMF1 EBV 0.5 2531 NEG 149 3916 8 EBV BLMF1 GLCTLVAML effector memory T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*02:01 B2M MHCI -1957 chip0420_142288 6.08 13.91 Chip1 T1D_1 T1D TGTGCCAGTAGTATAAATGGGGGCCGGAGGGATGGCTACACCTTC CASSINGGRRDGYTF TRBV19*01 TRBJ1-2*01 21.0 874.0 _CASSINGGRRDGYTF 32 4269 M1 FLU 0.83 1250 M1 179 4090 7 InfluenzaA M1 GILGFVFTL transitional T cells between effector and memory populations PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*02:01 B2M MHCI -1958 chip0420_2527 -2.87 10.4 Chip1 T1D_1 T1D TGTGCAGCAAGCGATTATTATGGAGGAAGCCAAGGAAATCTCATCTTT CAASDYYGGSQGNLIF TRAV23/DV6*01 TRAJ42*01 52.0 1901.0 TGTGCCAGCAGTGAATATGGTGTCGGTACCTTAAATGAGCAGTTCTTC CASSEYGVGTLNEQFF TRBV25-1*01 TRBJ2-1*01 11.0 407.0 CAASDYYGGSQGNLIF_CASSEYGVGTLNEQFF 1 5246 PGT-178 PGT 0.76 1480 PGT-178 143 5103 4 HomoSapiens PGT LLAGIGTVPI Naive T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*02:01 B2M MHCI -1959 chip0420_684796 16.14 9.98 Chip1 T1D_1 T1D TGCGGCCCCGCGGAACCTAACGACTACAAGCTCAGCTTT CGPAEPNDYKLSF TRAV30*01 TRAJ20*01 1.0 17.0 TGTGTCAGCCGCACGGGACAGCTATCGAACACCGGGGAGCTGCTTTTT CVSRTGQLSNTGELLF TRBV9*01 TRBJ2-2*01 8.0 454.0 CGPAEPNDYKLSF_CVSRTGQLSNTGELLF 1 2137 EBV-BLMF1 EBV 0.72 2531 NEG 156 1981 12 EBV BLMF1 GLCTLVAML effector T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*02:01 B2M MHCI -1960 chip0420_585694 12.47 7.51 Chip1 T1D_1 T1D TGTGTTGTGACCTCCTCCGGTTTTCAGCTGGCCAGAAGCTGCTCTTT CVVTSSGtt?SAGQKLLF TRAV8-2*01 TRAJ16*01 46.0 2182.0 CVVTSSGtt?SAGQKLLF_ 1 2389 EBV-BLMF1 EBV 0.89 2531 EBV-BLMF1 178 2211 10 EBV BLMF1 GLCTLVAML effector memory T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*02:01 B2M MHCI -1961 chip0420_570415 13.46 7.66 Chip1 T1D_2 T1D TGCAGCGTGGGGACAGGGGGAACTAATGAAAAACTGTTTTTT CSVGTGGTNEKLFF TRBV29-1*01 TRBJ1-4*01 99.0 5175.0 _CSVGTGGTNEKLFF 638 2584 EBV-BLMF1 EBV 0.42 2531 NEG 154 2430 10 EBV BLMF1 GLCTLVAML effector memory T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*02:01 B2M MHCI -1962 chip0420_714989 5.38 8.83 Chip1 T1D_2 T1D TGTGCTATGGAAGGGGCTTCAGGATACAGCACCCTCACCTTT CAMEGASGYSTLTF TRAV17*01 TRAJ11*01 53.0 2852.0 GGTGCCAGCAGCCGGCTGGGGGGGAAGGGTGGCTACACCTTC GASSRLGGKGGYTF TRBV6-1*01 TRBJ1-2*01 2.0 39.0 CAMEGASGYSTLTF_GASSRLGGKGGYTF 1 3236 EBV-LMP2-FLY EBV 0.92 355 NEG 169 3067 6 EBV LMP2 FLYALALLL central memory T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*02:01 B2M MHCI -1963 chip0420_511472 5.6 9.6 Chip1 T1D_1 T1D TGTGCTACGGAGGGCGATTCAGGATACAGCACCCTCACCTTT CATEGDSGYSTLTF TRAV17*01 TRAJ11*01 3.0 316.0 TGTGCCAGCAGTCCCCAGGGTGGTGGCTATGGCTACACCTTC CASSPQGGGYGYTF TRBV6-1*01 TRBJ1-2*01 24.0 976.0 CATEGDSGYSTLTF_CASSPQGGGYGYTF 2 4312 EBV-LMP2-FLY EBV 0.87 355 EBV-LMP2-FLY 166 4146 6 EBV LMP2 FLYALALLL central memory T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*02:01 B2M MHCI -1964 chip0420_326096 10.18 10.91 Chip1 T1D_2 T1D _ 6746 3232 EBV-BRLF1 EBV 0.89 1264 EBV-BRLF1 165 3067 9 EBV BRLF1 YVLDHLIVV effector memory T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*02:01 B2M MHCI -1965 chip0420_22535 7.19 13.11 Chip1 T1D_1 T1D TGTGCAATGAGAGAGGGAGTCGTGGAATATGGAAACAAACTGGTCTTT CAMREGVVEYGNKLVF TRAV14/DV4*01 TRAJ47*01 11.0 876.0 TGTGCCAGTAGTTTTGGAGCCGGGGAGCTGTTTTTT CASSFGAGELFF TRBV19*01 TRBJ2-2*01 20.0 1232.0 CAMREGVVEYGNKLVF_CASSFGAGELFF 3 4850 M1 FLU 0.41 1250 M1 160 4690 7 InfluenzaA M1 GILGFVFTL transitional T cells between effector and memory populations PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*02:01 B2M MHCI -1966 chip0420_352585 -1.05 9.44 Chip1 T1D_1 T1D TGTGCAGAGACCCTTTATTATAACACCGACAAGCTCATCTTT CAETLYYNTDKLIF TRAV5*01 TRAJ34*01 84.0 4360.0 TGTGCCAGCAGGCCGCAGGACTCCTACGAGCAGTACTTC CASRPQDSYEQYF TRBV25-1*01 TRBJ2-7*01 32.0 1523.0 CAETLYYNTDKLIF_CASRPQDSYEQYF 1 5415 M1 FLU 0.5 1250 M1 165 5250 4 InfluenzaA M1 GILGFVFTL Naive T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*02:01 B2M MHCI -1967 chip0420_677222 15.18 10.65 Chip1 T1D_1 T1D TGTGCCAGCAGCCCAGTTAGCGGGTCAACCTACGAGCAGTACTTC CASSPVSGSTYEQYF TRBV3-1*01 TRBJ2-7*01 15.0 1096.0 _CASSPVSGSTYEQYF 80 2685 EBV-BLMF1 EBV 1.0 2531 NEG 155 2530 12 EBV BLMF1 GLCTLVAML effector T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*02:01 B2M MHCI -1968 chip0420_653377 9.37 11.13 Chip1 T1D_2 T1D TGTGCTGGTTTTCTGGTGGCTACAATAAGCTGCTTTTT CAGFLVg?cYNKLLF TRAV21*01 TRAJ4*01 33.0 2096.0 TGTGCCAGCAGTTTTCTCGGGACAGGTCTCAACGAGCAGTACTTC CASSFLGTGLNEQYF TRBV28*01 TRBJ2-7*01 10.0 346.0 CAGFLVg?cYNKLLF_CASSFLGTGLNEQYF 1 4078 EBV-BLMF1 EBV 0.71 2531 NEG 176 3902 9 EBV BLMF1 GLCTLVAML effector memory T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*02:01 B2M MHCI -1969 chip0420_483096 11.83 13.78 Chip1 T1D_1 T1D _ 6746 1101 EBV-BLMF1 EBV 0.8 2531 NEG 144 957 11 EBV BLMF1 GLCTLVAML effector T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*02:01 B2M MHCI -1970 chip0420_378875 14.71 9.97 Chip1 T1D_2 T1D TGTGCTCTATGCGGGGGAGGAGGAAACAAACTCACCTTT CALCGGGGNKLTF TRAV16*01 TRAJ10*01 18.0 1518.0 TGCGCCAGCAGACAGGGGGATGGAGATACGCAGTATTTT CASRQGDGDTQYF TRBV10-2*01 TRBJ2-3*01 79.0 4628.0 CALCGGGGNKLTF_CASRQGDGDTQYF 1 1909 EBV-BLMF1 EBV 0.8 2531 NEG 167 1742 12 EBV BLMF1 GLCTLVAML effector T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*02:01 B2M MHCI -1971 chip0420_354193 -3.06 8.27 Chip1 T1D_1 T1D TGTGCCAGCAGCTTAGCAAACACTGAAGCTTTCTTT CASSLANTEAFF TRBV7-9*01 TRBJ1-1*01 34.0 1858.0 _CASSLANTEAFF 1 6326 PGT-178 PGT 0.92 1480 PGT-178 131 6195 2 HomoSapiens PGT LLAGIGTVPI Naive T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*02:01 B2M MHCI -1972 chip0420_601193 10.74 6.8 Chip1 T1D_2 T1D TGTGTGGTGAACGGCAGGGATAGCAGCTATAAATTGATCTTC CVVNGRDSSYKLIF TRAV12-1*01 TRAJ12*01 70.0 3374.0 TGTGCCAGCAGCTCGGGACTAGTCGCCCCCGGGGAGCTGTTTTTT CASSSGLVAPGELFF TRBV2*01 TRBJ2-2*01 84.0 5447.0 CVVNGRDSSYKLIF_CASSSGLVAPGELFF 98 3901 EBV-BLMF1 EBV 0.4 2531 NEG 170 3731 10 EBV BLMF1 GLCTLVAML effector memory T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*02:01 B2M MHCI -1973 chip0420_427176 5.88 13.71 Chip1 T1D_1 T1D _ 6746 4678 M1 FLU 0.62 1250 NEG 155 4523 7 InfluenzaA M1 GILGFVFTL transitional T cells between effector and memory populations PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*02:01 B2M MHCI -1974 chip0420_839310 13.41 9.63 Chip1 T1D_1 T1D TGTGTGGTGAACGGACGGGATAGCAGCTATAAATTGATCTTC CVVNGRDSSYKLIF TRAV12-1*01 TRAJ12*01 6.0 213.0 TGTGCCAGCAGTGACGGTCGGGTCCACCCGGGGACCCAGTACTTC CASSDGRVHPGTQYF TRBV2*01 TRBJ2-5*01 57.0 3295.0 CVVNGRDSSYKLIF_CASSDGRVHPGTQYF 14 3534 EBV-BLMF1 EBV 0.6 2531 NEG 170 3364 10 EBV BLMF1 GLCTLVAML effector memory T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*02:01 B2M MHCI -1975 chip0420_618008 10.69 11.4 Chip1 T1D_2 T1D TGCGCCAGCAGAGCGGGAGCCGGGGATACGCAGTATTTT CASRAGAGDTQYF TRBV10-2*01 TRBJ2-3*01 51.0 3477.0 _CASRAGAGDTQYF 59 2808 EBV-BLMF1 EBV 0.71 2531 NEG 156 2652 9 EBV BLMF1 GLCTLVAML effector memory T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*02:01 B2M MHCI -1976 chip0420_582074 10.43 10.41 Chip1 T1D_2 T1D TGTGCTGTGAGAGACGACAGAGATGACAAGATCATCTTT CAVRDDRDDKIIF TRAV3*01 TRAJ30*01 5.0 338.0 CAVRDDRDDKIIF_ 4 3435 EBV-BLMF1 EBV 0.83 2531 NEG 144 3291 9 EBV BLMF1 GLCTLVAML effector memory T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*02:01 B2M MHCI -1977 chip0420_1784 10.77 9.73 Chip1 T1D_2 T1D TGCAGCGTGGGGACAGGGGGAACTAATGAAAAACTGTTTTTT CSVGTGGTNEKLFF TRBV29-1*01 TRBJ1-4*01 44.0 1834.0 _CSVGTGGTNEKLFF 638 3313 EBV-BLMF1 EBV 0.62 2531 NEG 170 3143 9 EBV BLMF1 GLCTLVAML effector memory T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*02:01 B2M MHCI -1978 chip0420_330076 9.55 9.99 Chip1 T1D_2 T1D TGTGCTGTGAGAGACGACAAAGATGACAAGATCATCTTT CAVRDDKDDKIIF TRAV3*01 TRAJ30*01 60.0 2290.0 CAVRDDKDDKIIF_ 1 3796 EBV-BLMF1 EBV 0.77 2531 NEG 161 3635 8 EBV BLMF1 GLCTLVAML effector memory T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*02:01 B2M MHCI -1979 chip0420_298353 5.85 13.56 Chip1 T1D_1 T1D _ 6746 4688 M1 FLU 0.78 1250 M1 179 4509 7 InfluenzaA M1 GILGFVFTL transitional T cells between effector and memory populations PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*02:01 B2M MHCI -1980 chip0420_562831 11.25 6.88 Chip1 T1D_1 T1D TGCAGCGTTGGGACGGGGGGGACTAATGAAAAACTGTTTTTT CSVGTGGTNEKLFF TRBV29-1*01 TRBJ1-4*01 40.0 2304.0 _CSVGTGGTNEKLFF 638 4938 EBV-BLMF1 EBV 0.5 2531 NEG 154 4784 6 EBV BLMF1 GLCTLVAML central memory T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*02:01 B2M MHCI -1981 chip0420_8794 4.68 10.45 Chip1 T1D_2 T1D _ 6746 2802 GP160-311-320 HIV 0.45 109 NEG 143 2659 6 HIV-1 GP160 RGPGRAFVTI central memory T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*02:01 B2M MHCI -1982 chip0420_595661 10.43 10.49 Chip1 T1D_1 T1D TGTGCCAGCAGCCCAGTTAGCGGGTCAACCTACGAGCAGTACTTC CASSPVSGSTYEQYF TRBV3-1*01 TRBJ2-7*01 19.0 823.0 _CASSPVSGSTYEQYF 80 3418 EBV-BLMF1 EBV 0.71 2531 NEG 165 3253 9 EBV BLMF1 GLCTLVAML effector memory T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*02:01 B2M MHCI -1983 chip0420_338073 10.88 10.71 Chip1 T1D_1 T1D TGTGCCAGCAGTTCGGGACAGGTACTTCCCAATGAGCAGTTCTTC CASSSGQVLPNEQFF TRBV2*01 TRBJ2-1*01 39.0 1305.0 _CASSSGQVLPNEQFF 61 3716 EBV-BLMF1 EBV 0.75 2531 NEG 168 3548 9 EBV BLMF1 GLCTLVAML effector memory T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*02:01 B2M MHCI -1984 chip0420_160626 13.98 12.87 Chip1 T1D_2 T1D TGTGCAGAGAGTACTTCGGGAGGAAAGCTTATCTTC CAESTSGGKLIF TRAV5*01 TRAJ23*01 1.0 116.0 TGCAGCGTGGGGACAGGGGGAACTAATGAAAAACTGTTTTTT CSVGTGGTNEKLFF TRBV29-1*01 TRBJ1-4*01 38.0 1699.0 CAESTSGGKLIF_CSVGTGGTNEKLFF 107 1772 EBV-BLMF1 EBV 0.46 2531 NEG 152 1620 12 EBV BLMF1 GLCTLVAML effector T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*02:01 B2M MHCI -1985 chip0420_752293 10.44 11.05 Chip1 T1D_1 T1D _ 6746 4429 EBV-BRLF1 EBV 0.81 1264 EBV-BRLF1 137 4292 9 EBV BRLF1 YVLDHLIVV effector memory T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*02:01 B2M MHCI -1986 chip0420_136597 -2.74 11.21 Chip1 T1D_1 T1D _ 6746 4580 GAD65-114-122 GAD65 0.7 63 GAD65-114-122 159 4421 4 HomoSapiens GAD65 VMNILLQYV Naive T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*02:01 B2M MHCI -1987 chip0420_547018 13.54 13.32 Chip1 T1D_2 T1D TGTGCTTCCCTAACCCGGGGGCTTCCAAGCTAATCTTT CASLTRg?gASKLIF TRAV8-6*01 TRAJ3*01 29.0 2144.0 CASLTRg?gASKLIF_ 1 1972 EBV-BLMF1 EBV 0.5 2531 NEG 159 1813 11 EBV BLMF1 GLCTLVAML effector T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*02:01 B2M MHCI -1988 chip0420_78653 9.59 8.14 Chip1 T1D_2 T1D TGCGCCAGCAGAGCGGGAGCCGGGGCTACGCAGTATTTT CASRAGAGATQYF TRBV10-2*01 TRBJ2-3*01 13.0 734.0 _CASRAGAGATQYF 3 3201 EBV-BLMF1 EBV 0.5 2531 NEG 160 3041 8 EBV BLMF1 GLCTLVAML effector memory T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*02:01 B2M MHCI -1989 chip0420_118677 15.34 11.25 Chip1 T1D_2 T1D TGCGCCAGCAGAGCGGGAGCCGGGGATACGCAGTATTTT CASRAGAGDTQYF TRBV10-2*01 TRBJ2-3*01 31.0 1664.0 _CASRAGAGDTQYF 59 2164 EBV-BLMF1 EBV 0.64 2531 NEG 146 2018 12 EBV BLMF1 GLCTLVAML effector T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*02:01 B2M MHCI -1990 chip0420_98648 -1.05 9.21 Chip1 T1D_1 T1D TGTGCCAGCAGTCTAGGGTTAAATCAGCCCCAGCATTTT CASSLGLNQPQHF TRBV28*01 TRBJ1-5*01 72.0 3648.0 _CASSLGLNQPQHF 1 6260 PGT-178 PGT 0.68 1480 PGT-178 153 6107 3 HomoSapiens PGT LLAGIGTVPI Naive T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*02:01 B2M MHCI -1991 chip0420_88564 9.74 11.15 Chip1 T1D_2 T1D TGCAGCGTGGGGACAGGGGGAACTAATGAAAAACTGTTTTTT CSVGTGGTNEKLFF TRBV29-1*01 TRBJ1-4*01 83.0 4174.0 _CSVGTGGTNEKLFF 638 3543 EBV-BLMF1 EBV 0.6 2531 NEG 157 3386 9 EBV BLMF1 GLCTLVAML effector memory T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*02:01 B2M MHCI -1992 chip0420_54717 -2.64 9.13 Chip1 T1D_2 T1D _ 6746 5296 MART1-ALA MART1 0.5 269 MART1-ALA 136 5160 3 HomoSapiens MART1 ALAGIGILTV Naive T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*02:01 B2M MHCI -1993 chip0420_756027 14.04 9.53 Chip1 T1D_2 T1D TGTGCAGAGAGTACTTCGGGAGGAAAGCTTATCTTC CAESTSGGKLIF TRAV5*01 TRAJ23*01 24.0 1465.0 CAESTSGGKLIF_ 9 2489 EBV-BLMF1 EBV 0.67 2531 NEG 170 2319 12 EBV BLMF1 GLCTLVAML effector T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*02:01 B2M MHCI -1994 chip0420_326685 16.01 9.94 Chip1 T1D_1 T1D TGCGGCCCCGCGGAACCTAACGACTACAAGCTCAGCTTT CGPAEPNDYKLSF TRAV30*01 TRAJ20*01 37.0 2118.0 TGTGCCAGCAGCACGGGACAGCTATCGAACACCGGGGAGCTGTTTTTT CASSTGQLSNTGELFF TRBV9*01 TRBJ2-2*01 58.0 2545.0 CGPAEPNDYKLSF_CASSTGQLSNTGELFF 8 3328 EBV-BLMF1 EBV 0.55 2531 NEG 173 3155 12 EBV BLMF1 GLCTLVAML effector T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*02:01 B2M MHCI -1995 chip0420_689101 -0.71 10.69 Chip1 T1D_1 T1D TGTGCCAGCAGCTTGGGGACAGGGGGTCAGCCCCAGCATTTT CASSLGTGGQPQHF TRBV7-6*01 TRBJ1-5*01 42.0 2201.0 _CASSLGTGGQPQHF 1 4703 CVB3-P3A CVB 0.8 77 CVB3-P3A 152 4551 3 CoxsackievirusB P3A GIIYIIYKL Naive T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*02:01 B2M MHCI -1996 chip0420_672717 15.26 9.8 Chip1 T1D_2 T1D TGTGCCAGCAGCTCGGGACTAGTCGCCCCCGGGGAGCTGTTTTTT CASSSGLVAPGELFF TRBV2*01 TRBJ2-2*01 44.0 2810.0 _CASSSGLVAPGELFF 133 2879 EBV-BLMF1 EBV 0.44 2531 NEG 148 2731 12 EBV BLMF1 GLCTLVAML effector T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*02:01 B2M MHCI -1997 chip0420_868059 10.0 9.85 Chip1 T1D_1 T1D TACTTCCTCTTTATGCTGGTGGTCCTAGCTATGGAGAGCTTACATTT YFLFMLVgt?PSYGELTF TRAV26-2*01 TRAJ52*01 3.0 220.0 TGTGCCAGCAGTTCCGGAGGGAACGTGGATACGCAGTATTTT CASSSGGNVDTQYF TRBV7-3*01 TRBJ2-3*01 29.0 1380.0 YFLFMLVgt?PSYGELTF_CASSSGGNVDTQYF 1 4602 EBV-BLMF1 EBV 0.8 2531 NEG 170 4432 9 EBV BLMF1 GLCTLVAML effector memory T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*02:01 B2M MHCI -1998 chip0420_272843 9.12 8.57 Chip1 T1D_1 T1D TGTGCCAGCAGTTCCGGAGGGAACGTGGATACGCAGTATTTT CASSSGGNVDTQYF TRBV7-3*01 TRBJ2-3*01 33.0 1658.0 _CASSSGGNVDTQYF 47 4345 EBV-BLMF1 EBV 0.6 2531 NEG 144 4201 8 EBV BLMF1 GLCTLVAML effector memory T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*02:01 B2M MHCI -1999 chip0420_845097 6.42 12.3 Chip1 T1D_1 T1D _ 6746 2877 M1 FLU 0.78 1250 NEG 148 2729 7 InfluenzaA M1 GILGFVFTL transitional T cells between effector and memory populations PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*02:01 B2M MHCI -2000 chip0420_742383 10.86 12.17 Chip1 T1D_2 T1D _ 6746 2364 EBV-BLMF1 EBV 0.8 2531 NEG 158 2206 9 EBV BLMF1 GLCTLVAML effector memory T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*02:01 B2M MHCI -2001 chip0420_586960 -3.23 9.76 Chip1 T1D_1 T1D TGTGCTCTGAAGGCTCGACTCCAAGCTCAGCTTT CALKAcg??acSKLSF TRAV9-2*01 TRAJ20*01 24.0 2072.0 CALKAcg??acSKLSF_ 1 5665 ZNT8-107-115 ZNT8 0.83 10 ZNT8-107-115 170 5495 2 HomoSapiens ZNT8 LLIDLTSFL Naive T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*02:01 B2M MHCI -2002 chip0420_859051 8.79 8.86 Chip1 T1D_1 T1D TGTGCCAGCAGCCACTTATTAGGGACAGGTTTTGGCTACACCTTC CASSHLLGTGFGYTF TRBV3-1*01 TRBJ1-2*01 31.0 1853.0 _CASSHLLGTGFGYTF 6 5525 EBV-BRLF1 EBV 0.78 1264 EBV-BRLF1 173 5352 8 EBV BRLF1 YVLDHLIVV effector memory T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*02:01 B2M MHCI -2003 chip0420_845148 -1.3 9.31 Chip1 T1D_2 T1D TGTGCTTATAAAAGGACGAATGACATGCGCTTT CAYKRTNDMRF TRAV38-1*01 TRAJ43*01 1.0 11.0 CAYKRTNDMRF_ 1 5408 ZNT8-153-161 ZNT8 0.91 41 ZNT8-153-161 151 5257 3 HomoSapiens ZNT8 VVTGVLVYL Naive T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*02:01 B2M MHCI -2004 chip0420_157527 14.39 8.43 Chip1 T1D_2 T1D TGTGCCAGCAGCTCGGGACTAGTCGCCCCCGGGGAGCTGTTTTTT CASSSGLVAPGELFF TRBV2*01 TRBJ2-2*01 44.0 2124.0 _CASSSGLVAPGELFF 133 2592 EBV-BLMF1 EBV 0.83 2531 NEG 160 2432 12 EBV BLMF1 GLCTLVAML effector T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*02:01 B2M MHCI -2005 chip0420_862418 9.88 11.03 Chip1 T1D_2 T1D _ 6746 3651 EBV-BRLF1 EBV 0.98 1264 EBV-BRLF1 157 3494 9 EBV BRLF1 YVLDHLIVV effector memory T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*02:01 B2M MHCI -2006 chip0420_683 5.31 9.16 Chip1 T1D_2 T1D TGTGCTATGGACGGGGCTTCCGGCTACAGCACCCTCACCTTT CAMDGASGYSTLTF TRAV17*01 TRAJ11*01 50.0 1968.0 CAMDGASGYSTLTF_ 1 4567 EBV-LMP2-FLY EBV 0.92 355 NEG 144 4423 6 EBV LMP2 FLYALALLL central memory T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*02:01 B2M MHCI -2007 chip0420_817250 11.74 10.31 Chip1 T1D_2 T1D TGTGCCGTGAAAGACACCGACAAGCTCATCTTT CAVKDTDKLIF TRAV8-1*01 TRAJ34*01 26.0 1589.0 CAVKDTDKLIF_ 56 2938 EBV-BRLF1 EBV 0.92 1264 EBV-BRLF1 183 2755 9 EBV BRLF1 YVLDHLIVV effector memory T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*02:01 B2M MHCI -2008 chip0420_606429 11.5 11.04 Chip1 T1D_2 T1D TGCAGCGTGGGGACAGGGGGAACTAATGAAAAACTGTTTTTT CSVGTGGTNEKLFF TRBV29-1*01 TRBJ1-4*01 46.0 2233.0 _CSVGTGGTNEKLFF 638 2912 EBV-BLMF1 EBV 0.43 2531 NEG 169 2743 9 EBV BLMF1 GLCTLVAML effector memory T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*02:01 B2M MHCI -2009 chip0420_603664 -3.62 12.7 Chip1 T1D_1 T1D TGTGCCAGCAGTTTAGGAGCGGGAGGCTGGGAGACCCAGTACTTC CASSLGAGGWETQYF TRBV12-3*01,TRBV12-4*01 TRBJ2-5*01 14.0 875.0 _CASSLGAGGWETQYF 1 3352 GP160-311-320 HIV 0.6 109 NEG 141 3211 1 HIV-1 GP160 RGPGRAFVTI Naive T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*02:01 B2M MHCI -2010 chip0420_428972 15.0 11.67 Chip1 T1D_2 T1D TGCGCCAGCAGTCAATCGAGAGGGTCGCTCTGGGATACGCAGTATTTT CASSQSRGSLWDTQYF TRBV4-3*01 TRBJ2-3*01 102.0 4612.0 _CASSQSRGSLWDTQYF 21 1960 EBV-BRLF1 EBV 1.0 1264 EBV-BRLF1 142 1818 12 EBV BRLF1 YVLDHLIVV effector T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*02:01 B2M MHCI -2011 chip0420_787202 11.59 13.55 Chip1 T1D_1 T1D TGTGCCAGCAGTTCCGGAGGGAACGTGGATACGCAGTATTTT CASSSGGNVDTQYF TRBV7-3*01 TRBJ2-3*01 45.0 1878.0 _CASSSGGNVDTQYF 47 2122 EBV-BLMF1 EBV 0.88 2531 NEG 129 1993 11 EBV BLMF1 GLCTLVAML effector T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*02:01 B2M MHCI -2012 chip0420_744123 13.82 7.03 Chip1 T1D_2 T1D TGTGCCAGCAACTTAGCGGGGAACAATGAGCAGTTCTTC CASNLAGNNEQFF TRBV9*01 TRBJ2-1*01 22.0 1476.0 _CASNLAGNNEQFF 15 3607 EBV-BLMF1 EBV 0.67 2531 NEG 163 3444 10 EBV BLMF1 GLCTLVAML effector memory T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*02:01 B2M MHCI -2013 chip0420_270338 7.69 12.85 Chip1 T1D_1 T1D TGTGGCACTCAAGAGAATGACAGCTGGGGGAAATTGCAGTTT CGTQENDSWGKLQF TRAV30*01 TRAJ24*01 6.0 375.0 TGTGCCAGTAGTGTCAGGGCAGGAGAGACCCAGTACTTC CASSVRAGETQYF TRBV19*01 TRBJ2-5*01 33.0 2524.0 CGTQENDSWGKLQF_CASSVRAGETQYF 9 3486 M1 FLU 0.76 1250 M1 173 3313 7 InfluenzaA M1 GILGFVFTL transitional T cells between effector and memory populations PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*02:01 B2M MHCI -2014 chip0420_650155 9.23 9.32 Chip1 T1D_1 T1D TGTGCCAGCAGTTCCGGAGGGAACGTGGATACGCAGTATTTT CASSSGGNVDTQYF TRBV7-3*01 TRBJ2-3*01 1.0 17.0 _CASSSGGNVDTQYF 47 4184 EBV-BLMF1 EBV 0.69 2531 NEG 170 4014 8 EBV BLMF1 GLCTLVAML effector memory T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*02:01 B2M MHCI -2015 chip0420_744771 -2.98 12.38 Chip1 T1D_2 T1D _ 6746 3379 ZNT8-153-161 ZNT8 0.59 41 ZNT8-153-161 157 3222 1 HomoSapiens ZNT8 VVTGVLVYL Naive T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*02:01 B2M MHCI -2016 chip0420_226931 -3.54 10.46 Chip1 T1D_2 T1D TGTGCAATGGGTATATCTAACTTTGGAAATGAGAAATTAACCTTT CAMGISNFGNEKLTF TRAV12-3*01 TRAJ48*01 70.0 2086.0 TGTGCCAGCAGCCAAGATCAGGCAGGTTATGGTCAAGAGACCCAGTACTTC CASSQDQAGYGQETQYF TRBV3-1*01 TRBJ2-5*01 3.0 59.0 CAMGISNFGNEKLTF_CASSQDQAGYGQETQYF 1 3611 PGT-178 PGT 0.77 1480 PGT-178 133 3478 2 HomoSapiens PGT LLAGIGTVPI Naive T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*02:01 B2M MHCI -2017 chip0420_823333 -2.52 9.29 Chip1 T1D_1 T1D _ 6746 4587 PGT-178 PGT 0.56 1480 PGT-178 118 4469 2 HomoSapiens PGT LLAGIGTVPI Naive T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*02:01 B2M MHCI -2018 chip0420_33115 10.23 10.06 Chip1 T1D_1 T1D TGTGCCAGCAGTCTTTTTTCGAGTGAGCAGTTCTTC CASSLFSSEQFF TRBV28*01 TRBJ2-1*01 1.0 109.0 _CASSLFSSEQFF 4 3440 EBV-BRLF1 EBV 0.97 1264 EBV-BRLF1 137 3303 9 EBV BRLF1 YVLDHLIVV effector memory T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*02:01 B2M MHCI -2019 chip0420_869498 9.33 8.44 Chip1 T1D_2 T1D TGCGCCAGCAGTGAGGACGGTATGAACACTGAAGCTTTCTTT CASSEDGMNTEAFF TRBV10-2*01 TRBJ1-1*01 14.0 495.0 _CASSEDGMNTEAFF 10 5123 EBV-LMP2A EBV 0.93 700 EBV-LMP2A 144 4979 8 EBV LMP2A CLGGLLTMV effector memory T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*02:01 B2M MHCI -2020 chip0420_467643 -1.9 7.17 Chip1 T1D_1 T1D TGTGCCAGCAGCTTCCCACATGACACTGAAGCTTTCTTT CASSFPHDTEAFF TRBV11-3*01 TRBJ1-1*01 18.0 696.0 _CASSFPHDTEAFF 1 6574 PGT-178 PGT 0.59 1480 PGT-178 155 6419 3 HomoSapiens PGT LLAGIGTVPI Naive T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*02:01 B2M MHCI -2021 chip0420_598889 5.92 13.81 Chip1 T1D_1 T1D _ 6746 6156 M1 FLU 0.77 1250 NEG 149 6007 7 InfluenzaA M1 GILGFVFTL transitional T cells between effector and memory populations PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*02:01 B2M MHCI -2022 chip0420_498599 9.17 9.8 Chip1 T1D_1 T1D TGCAGCGTCGGCTCCAGGGGAACTAATGAAAAACTGTTTTTT CSVGSRGTNEKLFF TRBV29-1*01 TRBJ1-4*01 25.0 898.0 _CSVGSRGTNEKLFF 283 3918 EBV-BLMF1 EBV 0.81 2531 NEG 163 3755 8 EBV BLMF1 GLCTLVAML effector memory T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*02:01 B2M MHCI -2023 chip0420_206584 11.04 10.42 Chip1 T1D_1 T1D TGTGCCAGCAGCCCAGTTAGCGGGTCAACCTACGAGCAGTACTTC CASSPVSGSTYEQYF TRBV3-1*01 TRBJ2-7*01 7.0 338.0 _CASSPVSGSTYEQYF 80 3854 EBV-BLMF1 EBV 0.92 2531 NEG 160 3694 9 EBV BLMF1 GLCTLVAML effector memory T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*02:01 B2M MHCI -2024 chip0420_131976 7.32 13.28 Chip1 T1D_1 T1D TGTGGCACTCAAGAGAATGACAGCTGGGGGAAATTGCAGTTT CGTQENDSWGKLQF TRAV30*01 TRAJ24*01 1.0 137.0 TGTGCCAGTAGTGTCAGGGCAGGAGAGACCCAGTACTTC CASSVRAGETQYF TRBV19*01 TRBJ2-5*01 7.0 160.0 CGTQENDSWGKLQF_CASSVRAGETQYF 9 3344 M1 FLU 0.83 1250 M1 140 3204 7 InfluenzaA M1 GILGFVFTL transitional T cells between effector and memory populations PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*02:01 B2M MHCI -2025 chip0420_615462 -0.21 8.66 Chip1 T1D_1 T1D TGTGCCAGCAGTGCGGGACTAGCGGGCAATGAGCAGTTCTTC CASSAGLAGNEQFF TRBV28*01 TRBJ2-1*01 15.0 1088.0 _CASSAGLAGNEQFF 1 7836 PGT-178 PGT 0.87 1480 PGT-178 146 7690 4 HomoSapiens PGT LLAGIGTVPI Naive T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*02:01 B2M MHCI -2026 chip0420_271904 -0.54 4.55 Chip1 T1D_1 T1D TGTGCCAGCAGTTTCTCGCAGCCCACAGATACGCAGTATTTT CASSFSQPTDTQYF TRBV27*01 TRBJ2-3*01 6.0 167.0 _CASSFSQPTDTQYF 1 4823 EBV-LMP2A EBV 0.4 700 NEG 158 4665 5 EBV LMP2A CLGGLLTMV natural killer-like T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*02:01 B2M MHCI -2027 chip0420_181458 12.36 7.09 Chip1 T1D_2 T1D TGCAGCGTGGGGACAGGGGGAACTAATGAAAAACTGTTTTTT CSVGTGGTNEKLFF TRBV29-1*01 TRBJ1-4*01 46.0 1910.0 _CSVGTGGTNEKLFF 638 2071 EBV-BLMF1 EBV 0.5 2531 NEG 167 1904 10 EBV BLMF1 GLCTLVAML effector memory T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*02:01 B2M MHCI -2028 chip0420_59694 15.71 9.96 Chip1 T1D_2 T1D TGTGCAGAGAGTACTTCGGGAGGAAAGCTTATCTTC CAESTSGGKLIF TRAV5*01 TRAJ23*01 34.0 2667.0 TGCAGCGTGGGGACAGGGGGAACTAATGAAAAACTGTTTTTT CSVGTGGTNEKLFF TRBV29-1*01 TRBJ1-4*01 92.0 4534.0 CAESTSGGKLIF_CSVGTGGTNEKLFF 107 2989 EBV-BLMF1 EBV 0.83 2531 NEG 160 2829 12 EBV BLMF1 GLCTLVAML effector T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*02:01 B2M MHCI -2029 chip0420_789928 -1.46 9.51 Chip1 T1D_1 T1D _ 6746 4088 HCVNS4B-1807-1816 HCV 0.75 74 HCVNS4B-1807-1816 137 3951 3 HCV NS4B LLFNILGGWV Naive T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*02:01 B2M MHCI -2030 chip0420_314287 9.1 9.8 Chip1 T1D_2 T1D TGCGCCAGCAGAGCGGGAGCCGGGGATACGCAGTATTTT CASRAGAGDTQYF TRBV10-2*01 TRBJ2-3*01 18.0 721.0 _CASRAGAGDTQYF 59 4580 EBV-BLMF1 EBV 0.77 2531 NEG 167 4413 8 EBV BLMF1 GLCTLVAML effector memory T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*02:01 B2M MHCI -2031 chip0420_663346 7.04 12.68 Chip1 T1D_1 T1D _ 6746 3293 M1 FLU 0.65 1250 M1 138 3155 7 InfluenzaA M1 GILGFVFTL transitional T cells between effector and memory populations PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*02:01 B2M MHCI -2032 chip0420_808353 -2.94 8.49 Chip1 T1D_1 T1D TGTGCAATGAGCCTATCTAACTTTGGAAATGAGAAATTAACCTTT CAMSLSNFGNEKLTF TRAV12-3*01 TRAJ48*01 57.0 2155.0 CAMSLSNFGNEKLTF_ 16 5823 PGT-178 PGT 0.93 1480 PGT-178 144 5679 2 HomoSapiens PGT LLAGIGTVPI Naive T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*02:01 B2M MHCI -2033 chip0420_821247 -2.21 8.23 Chip1 T1D_1 T1D TGTGCCAGCAGTTCTAGGCTAGCGCCCACAGATACGCAGTATTTT CASSSRLAPTDTQYF TRBV28*01 TRBJ2-3*01 10.0 373.0 _CASSSRLAPTDTQYF 1 6364 PREINS-2-10 INS 1.0 37 PREINS-2-10 142 6222 2 HomoSapiens PREINS ALWMRLLPL Naive T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*02:01 B2M MHCI -2034 chip0420_293158 -2.02 11.04 Chip1 T1D_1 T1D _ 6746 3905 INS-2-11 INS 0.76 5 INS-2-11 154 3751 3 HomoSapiens INS ALWMRLLPLL Naive T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*02:01 B2M MHCI -2035 chip0420_246675 11.13 10.08 Chip1 T1D_2 T1D TGTGTGGTGAACCCCCCCCACGACTCCGAGCTCGGCTTT CVVNPPHDSELGF TRAV12-1*01 TRAJ20*01 2.0 318.0 CVVNPPHDSELGF_ 1 2677 EBV-BLMF1 EBV 0.71 2531 NEG 157 2520 9 EBV BLMF1 GLCTLVAML effector memory T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*02:01 B2M MHCI -2036 chip0420_590553 12.55 7.61 Chip1 T1D_1 T1D _ 6746 2668 EBV-BRLF1 EBV 0.88 1264 EBV-BRLF1 149 2519 10 EBV BRLF1 YVLDHLIVV effector memory T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*02:01 B2M MHCI -2037 chip0420_526077 6.64 13.61 Chip1 T1D_1 T1D TGTGCCCGTAGTTCGCTCTCCCTGGCTACGCAGTCTTTT CARSSLSLATQSF TRBV19*01 TRBJ2-3*01 4.0 207.0 _CARSSLSLATQSF 1 3556 M1 FLU 0.96 1250 M1 154 3402 7 InfluenzaA M1 GILGFVFTL transitional T cells between effector and memory populations PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*02:01 B2M MHCI -2038 chip0420_748709 10.03 9.7 Chip1 T1D_1 T1D TGTGCAGCAAGCATGCTGGTGGTACTAGCTATGGAAAGCTGGCATTT CAASMLVgt?TSYGKLAF TRAV29/DV5*01 TRAJ52*01 4.0 134.0 CAASMLVgt?TSYGKLAF_ 1 3983 EBV-BLMF1 EBV 0.56 2531 NEG 160 3823 8 EBV BLMF1 GLCTLVAML effector memory T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*02:01 B2M MHCI -2039 chip0420_509328 7.6 10.0 Chip1 T1D_2 T1D TGCGCCAGCAGCTCTGACGGACTGAACACTGAAGCTTTCTTT CASSSDGLNTEAFF TRBV10-2*01 TRBJ1-1*01 13.0 239.0 _CASSSDGLNTEAFF 1 4803 EBV-LMP2A EBV 0.98 700 EBV-LMP2A 184 4619 8 EBV LMP2A CLGGLLTMV effector memory T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*02:01 B2M MHCI -2040 chip0420_474720 11.99 6.54 Chip1 T1D_2 T1D TGCGCCAGCAGTGAGGCCGGTATGAACACTGAAGCTTTCTTT CASSEAGMNTEAFF TRBV10-2*01 TRBJ1-1*01 63.0 3721.0 _CASSEAGMNTEAFF 2 4908 EBV-LMP2A EBV 0.92 700 EBV-LMP2A 162 4746 10 EBV LMP2A CLGGLLTMV effector memory T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*02:01 B2M MHCI -2041 chip0420_543463 15.84 10.78 Chip1 T1D_2 T1D TGTGCTTCCCTAACCCCGGGGGCTTCCAAGATAATCTTT CASLTPGASKIIF TRAV8-6*01 TRAJ3*01 26.0 2111.0 TGTGCCAGCAGCTCGGGACTAGTCGCCCCCGGGGAGCTGTTTTTT CASSSGLVAPGELFF TRBV2*01 TRBJ2-2*01 32.0 1807.0 CASLTPGASKIIF_CASSSGLVAPGELFF 38 1839 EBV-BLMF1 EBV 1.0 2531 NEG 179 1660 12 EBV BLMF1 GLCTLVAML effector T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*02:01 B2M MHCI -2042 chip0420_640983 14.39 9.1 Chip1 T1D_2 T1D TGTGCCAGCAGTGAATGGACAGGGTATCAGCCCCAGCATTTT CASSEWTGYQPQHF TRBV6-1*01 TRBJ1-5*01 38.0 1155.0 _CASSEWTGYQPQHF 9 2692 EBV-BLMF1 EBV 1.0 2531 NEG 152 2540 12 EBV BLMF1 GLCTLVAML effector T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*02:01 B2M MHCI -2043 chip0420_88897 10.11 10.21 Chip1 T1D_1 T1D _ 6746 3344 EBV-BLMF1 EBV 0.8 2531 NEG 148 3196 9 EBV BLMF1 GLCTLVAML effector memory T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*02:01 B2M MHCI -2044 chip0420_14970 6.35 12.03 Chip1 T1D_1 T1D _ 6746 5006 M1 FLU 0.91 1250 M1 151 4855 7 InfluenzaA M1 GILGFVFTL transitional T cells between effector and memory populations PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*02:01 B2M MHCI -2045 chip0420_667690 10.11 10.57 Chip1 T1D_2 T1D TGCAGCGACAGAGACGGAGGAAACTATGGCTACACCTTC CSDRDGGNYGYTF TRBV29-1*01 TRBJ1-2*01 47.0 2685.0 _CSDRDGGNYGYTF 7 2727 EBV-BRLF1 EBV 0.92 1264 EBV-BRLF1 168 2559 9 EBV BRLF1 YVLDHLIVV effector memory T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*02:01 B2M MHCI -2046 chip0420_488654 11.03 7.75 Chip1 T1D_2 T1D TGCGCCAGCAGGATGGGGGCCGGGGATACGCAGTATTTT CASRMGAGDTQYF TRBV10-2*01 TRBJ2-3*01 1.0 75.0 _CASRMGAGDTQYF 90 3313 EBV-BLMF1 EBV 0.75 2531 NEG 149 3164 10 EBV BLMF1 GLCTLVAML effector memory T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*02:01 B2M MHCI -2047 chip0420_460318 10.21 9.34 Chip1 T1D_1 T1D TGTGCCAGCAGTTCCGGAGGGAACGTGGATACGCAGTATTTT CASSSGGNVDTQYF TRBV7-3*01 TRBJ2-3*01 36.0 1924.0 _CASSSGGNVDTQYF 47 2974 EBV-BLMF1 EBV 0.86 2531 NEG 143 2831 8 EBV BLMF1 GLCTLVAML effector memory T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*02:01 B2M MHCI -2048 chip0420_324629 10.97 12.59 Chip1 T1D_2 T1D _ 6746 2058 EBV-BLMF1 EBV 1.0 2531 NEG 136 1922 11 EBV BLMF1 GLCTLVAML effector T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*02:01 B2M MHCI -2049 chip0420_316235 10.84 8.9 Chip1 T1D_1 T1D TGCGGCCTAGAGGAACCTAACGACTCCAAGCTCAGCTTT CGLEEPNDSKLSF TRAV30*01 TRAJ20*01 13.0 612.0 TGTGCCAGCAGCACGGGACAGCTATCGAACACCGGGGAGCTGTTTTTT CASSTGQLSNTGELFF TRBV9*01 TRBJ2-2*01 32.0 1228.0 CGLEEPNDSKLSF_CASSTGQLSNTGELFF 1 4648 EBV-BLMF1 EBV 0.71 2531 NEG 151 4497 10 EBV BLMF1 GLCTLVAML effector memory T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*02:01 B2M MHCI -2050 chip0420_87294 5.63 12.76 Chip1 T1D_1 T1D TGTGCACAGAGGTACCGATTCAGGAGGAGGTGCTGACGGACTCACCTTT CAQRYRFR??aGGADGLTF TRAV25*01 TRAJ45*01 2.0 36.0 TGTGCCAGTAGTATTAGGAGCTCCTACGAGCAGTACTTC CASSIRSSYEQYF TRBV19*01 TRBJ2-7*01 26.0 1562.0 CAQRYRFR??aGGADGLTF_CASSIRSSYEQYF 1 5017 M1 FLU 0.67 1250 M1 169 4848 7 InfluenzaA M1 GILGFVFTL transitional T cells between effector and memory populations PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*02:01 B2M MHCI -2051 chip0420_692380 10.74 10.42 Chip1 T1D_1 T1D TGCAGCGTCGGCTCCAGGGGAACTAATGAAAAACTGTTTTTT CSVGSRGTNEKLFF TRBV29-1*01 TRBJ1-4*01 42.0 2331.0 _CSVGSRGTNEKLFF 283 3870 EBV-BLMF1 EBV 0.5 2531 NEG 155 3715 9 EBV BLMF1 GLCTLVAML effector memory T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*02:01 B2M MHCI -2052 chip0420_676822 0.69 8.55 Chip1 T1D_1 T1D TGTGCTACGGCGGGGGCTCGCAACTATCAGTTAATCTGG CATAGARNYQLIW TRAV17*01 TRAJ33*01 53.0 2277.0 TGTGCCAGCAGCCAGGGGAGAGGCTACACCTTC CASSQGRGYTF TRBV7-8*01 TRBJ1-2*01 11.0 758.0 CATAGARNYQLIW_CASSQGRGYTF 1 6481 INS-6-16 INS 0.72 20 INS-6-16 149 6332 4 HomoSapiens INS RLLPLLALLAL Naive T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*02:01 B2M MHCI -2053 chip0420_858851 -1.48 7.25 Chip1 T1D_1 T1D _ 6746 5441 PGT-178 PGT 0.76 1480 PGT-178 153 5288 3 HomoSapiens PGT LLAGIGTVPI Naive T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*02:01 B2M MHCI -2054 chip0420_651713 -3.22 11.27 Chip1 T1D_1 T1D TGTGCCAGCAGCCCAGGGGGCTTGGCCCCCTACGAGCAGTACTTC CASSPGGLAPYEQYF TRBV27*01 TRBJ2-7*01 28.0 1618.0 _CASSPGGLAPYEQYF 1 5012 MART1-ALA MART1 0.45 269 MART1-ALA 162 4850 4 HomoSapiens MART1 ALAGIGILTV Naive T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*02:01 B2M MHCI -2055 chip0420_881033 5.48 12.59 Chip1 T1D_1 T1D TGTGCCAGTAACATAGCGGGAGACAATGAGCAGTTCTTC CASNIAGDNEQFF TRBV19*01 TRBJ2-1*01 38.0 2621.0 _CASNIAGDNEQFF 1 4947 M1 FLU 0.62 1250 M1 146 4801 7 InfluenzaA M1 GILGFVFTL transitional T cells between effector and memory populations PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*02:01 B2M MHCI -2056 chip0420_373371 -2.35 13.85 Chip1 T1D_1 T1D TGTGCCGTGGGCGCTGCCATGCGCTTT CAVGAAMRF TRAV12-2*01 TRAJ43*01 5.0 425.0 CAVGAAMRF_ 1 2491 PREINS-34-42 INS 0.91 9 PREINS-34-42 129 2362 1 HomoSapiens PREINS HLVEALYLV Naive T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*02:01 B2M MHCI -2057 chip0420_322223 5.28 11.23 Chip1 T1D_1 T1D TGTGCTCCGGAAGGGGCTTCCGGATACAGCACCCTCACCTTT CAPEGASGYSTLTF TRAV17*01 TRAJ11*01 47.0 2091.0 CAPEGASGYSTLTF_ 2 5547 EBV-LMP2-FLY EBV 0.95 355 EBV-LMP2-FLY 127 5420 6 EBV LMP2 FLYALALLL central memory T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*02:01 B2M MHCI -2058 chip0420_199171 11.34 7.91 Chip1 T1D_2 T1D TCTGCCGTGAATTCCAAAAACTCTCAGTTAATATGG SAVNSKNSQLIW TRAV12-2*01 TRAJ33*01 6.0 398.0 TGCAGCGACAGAGACGGAGGAAACTATGGCTACACCTTC CSDRDGGNYGYTF TRBV29-1*01 TRBJ1-2*01 175.0 8510.0 SAVNSKNSQLIW_CSDRDGGNYGYTF 1 3648 EBV-BRLF1 EBV 0.86 1264 EBV-BRLF1 194 3454 10 EBV BRLF1 YVLDHLIVV effector memory T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*02:01 B2M MHCI -2059 chip0420_58733 11.39 6.79 Chip1 T1D_3 T1D TGTGCCAGCAGTCTCCACCTTCGACAGGATGAACAGCCCCAGCATTTT CASSLHLRQDEQPQHF TRBV28*01 TRBJ1-5*01 31.0 1094.0 _CASSLHLRQDEQPQHF 12 4320 EBNA3A-158-166 EBV 0.75 444 NEG 165 4155 10 EBV EBNA3A QAKWRLQTL effector memory T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-B*08:01 B2M MHCI -2060 chip0420_15684 10.81 8.88 Chip1 T1D_2 T1D TGTGTGGCGAACGGCAGGGATCGCCGCTTTCCCTTGCTCTTC CVANGRDRRFPLLF TRAV12-1*01 TRAJ12*01 19.0 1123.0 TGTGCCAGCAGCTCGGGACTAGTCGCCCCCGGGGAGCTGTTTTTT CASSSGLVAPGELFF TRBV2*01 TRBJ2-2*01 31.0 1472.0 CVANGRDRRFPLLF_CASSSGLVAPGELFF 1 3273 EBV-BLMF1 EBV 0.7 2531 NEG 160 3113 10 EBV BLMF1 GLCTLVAML effector memory T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*02:01 B2M MHCI -2061 chip0420_117710 8.3 8.48 Chip1 T1D_1 T1D TGGGCTGTGAGTGCTTTGCGGCTGACCTGCGCTTT WAVSAtt?AADLRF TRAV8-4*01 TRAJ43*01 11.0 811.0 TGCAGCGTCGGCTCCAGGGGAACTAATGAAAAACTGTTTTTT CSVGSRGTNEKLFF TRBV29-1*01 TRBJ1-4*01 35.0 1958.0 WAVSAtt?AADLRF_CSVGSRGTNEKLFF 1 4913 EBV-BLMF1 EBV 0.6 2531 NEG 166 4747 8 EBV BLMF1 GLCTLVAML effector memory T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*02:01 B2M MHCI -2062 chip0420_764892 6.24 10.77 Chip1 T1D_1 T1D _ 6746 4374 EBV-LMP2-FLY EBV 0.6 355 EBV-LMP2-FLY 143 4231 6 EBV LMP2 FLYALALLL central memory T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*02:01 B2M MHCI -2063 chip0420_636150 12.09 10.18 Chip1 T1D_1 T1D TGTGCCAGCAGCCAAAGCCCGGGTGGTACGCAGTATTTT CASSQSPGGTQYF TRBV14*01 TRBJ2-3*01 5.0 258.0 _CASSQSPGGTQYF 94 4021 EBV-BLMF1 EBV 0.75 2531 NEG 176 3845 9 EBV BLMF1 GLCTLVAML effector memory T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*02:01 B2M MHCI -2064 chip0420_457039 9.87 10.72 Chip1 T1D_2 T1D TGCGCCAGCAGAGCGGGAGCCGGGGATACGCAGTATTTT CASRAGAGDTQYF TRBV10-2*01 TRBJ2-3*01 21.0 1473.0 _CASRAGAGDTQYF 59 2651 EBV-BLMF1 EBV 0.83 2531 NEG 157 2494 9 EBV BLMF1 GLCTLVAML effector memory T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*02:01 B2M MHCI -2065 chip0420_271467 7.83 8.09 Chip1 T1D_1 T1D TGTGCCAGCAGTCCGGACCAAACTAGCTCCTACAATGAGCAGTTCTTC CASSPDQTSSYNEQFF TRBV27*01 TRBJ2-1*01 24.0 2224.0 _CASSPDQTSSYNEQFF 47 6522 EBV-BRLF1 EBV 0.72 1264 EBV-BRLF1 155 6367 8 EBV BRLF1 YVLDHLIVV effector memory T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*02:01 B2M MHCI -2066 chip0420_182425 9.57 8.85 Chip1 T1D_1 T1D TGTGCCAGCAGCACGGGACAGCTATCGAACACCGGGGAGCTGTTTTTT CASSTGQLSNTGELFF TRBV9*01 TRBJ2-2*01 45.0 1944.0 _CASSTGQLSNTGELFF 82 4151 EBV-BLMF1 EBV 0.61 2531 NEG 155 3996 8 EBV BLMF1 GLCTLVAML effector memory T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*02:01 B2M MHCI -2067 chip0420_870746 -2.39 10.55 Chip1 T1D_1 T1D _ 6746 4967 PGT-178 PGT 1.0 1480 PGT-178 153 4814 3 HomoSapiens PGT LLAGIGTVPI Naive T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*02:01 B2M MHCI -2068 chip0420_241622 -3.06 9.06 Chip1 T1D_2 T1D TGTGCAGACGACTACAAGCTCAGCTTT CADDYKLSF TRAV13-1*01 TRAJ20*01 15.0 1619.0 TGTGCCAGCAGTCCGCGACAGGGGAGTGAGCAGTTCTTC CASSPRQGSEQFF TRBV12-3*01,TRBV12-4*01 TRBJ2-1*01 24.0 1564.0 CADDYKLSF_CASSPRQGSEQFF 1 4024 INSDRIP-1-9 INS 0.47 8 INSDRIP-1-9 146 3878 2 HomoSapiens INSDRIP MLYQHLLPL Naive T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*02:01 B2M MHCI -2069 chip0420_467496 10.21 10.45 Chip1 T1D_2 T1D _ 6746 3531 EBV-BLMF1 EBV 0.64 2531 NEG 158 3373 9 EBV BLMF1 GLCTLVAML effector memory T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*02:01 B2M MHCI -2070 chip0420_365049 10.13 8.64 Chip1 T1D_1 T1D TGTGCCAGCAGTTCCGGAGGGAACGTGGATACGCAGTATTTT CASSSGGNVDTQYF TRBV7-3*01 TRBJ2-3*01 40.0 1811.0 _CASSSGGNVDTQYF 47 4791 EBV-BLMF1 EBV 0.71 2531 NEG 171 4620 8 EBV BLMF1 GLCTLVAML effector memory T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*02:01 B2M MHCI -2071 chip0420_79795 9.1 10.37 Chip1 T1D_2 T1D TGCAGCGTGGGGACAGGGGGAACTAATGAAAAACTGTTTTTT CSVGTGGTNEKLFF TRBV29-1*01 TRBJ1-4*01 59.0 2958.0 _CSVGTGGTNEKLFF 638 3796 EBV-BLMF1 EBV 0.5 2531 NEG 154 3642 8 EBV BLMF1 GLCTLVAML effector memory T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*02:01 B2M MHCI -2072 chip0420_817049 15.84 11.59 Chip1 T1D_2 T1D TGTGTGGTGAACGGCAGGGATAGCAGCTATAAATTGATCTTC CVVNGRDSSYKLIF TRAV12-1*01 TRAJ12*01 51.0 2805.0 TGTGCCAGCAGCTCGGGACTAGTCGCCCCCGGGGAGCTGTTTTTT CASSSGLVAPGELFF TRBV2*01 TRBJ2-2*01 49.0 2907.0 CVVNGRDSSYKLIF_CASSSGLVAPGELFF 98 2091 EBV-BLMF1 EBV 0.67 2531 NEG 163 1928 12 EBV BLMF1 GLCTLVAML effector T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*02:01 B2M MHCI -2073 chip0420_268352 11.78 6.5 Chip1 T1D_2 T1D TGCAGCGTGGGGACAGGGGGAACTAATGAAAAACTGTTTTTT CSVGTGGTNEKLFF TRBV29-1*01 TRBJ1-4*01 92.0 4992.0 _CSVGTGGTNEKLFF 638 3956 EBV-BLMF1 EBV 0.5 2531 NEG 173 3783 10 EBV BLMF1 GLCTLVAML effector memory T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*02:01 B2M MHCI -2074 chip0420_691986 11.66 7.48 Chip1 T1D_2 T1D TGCAGCGTGGGGACAGGGGGAACTAATGAAAAACTGTTTTTT CSVGTGGTNEKLFF TRBV29-1*01 TRBJ1-4*01 149.0 7185.0 _CSVGTGGTNEKLFF 638 2816 EBV-BLMF1 EBV 0.88 2531 NEG 148 2668 10 EBV BLMF1 GLCTLVAML effector memory T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*02:01 B2M MHCI -2075 chip0420_267151 7.42 11.5 Chip1 T1D_2 T1D _ 6746 4175 PREINS-34-42 INS 0.94 9 PREINS-34-42 137 4038 7 HomoSapiens PREINS HLVEALYLV transitional T cells between effector and memory populations PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*02:01 B2M MHCI -2076 chip0420_108823 14.03 9.56 Chip1 T1D_2 T1D TGCAGCGTGGAGACAGGGGGAACTAATGAAAAACTGTTTTTT CSVETGGTNEKLFF TRBV29-1*01 TRBJ1-4*01 33.0 1401.0 _CSVETGGTNEKLFF 2 2345 EBV-BLMF1 EBV 0.8 2531 NEG 156 2189 12 EBV BLMF1 GLCTLVAML effector T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*02:01 B2M MHCI -2077 chip0420_814477 15.78 10.1 Chip1 T1D_1 T1D TGCAGCGTCGGCTCCAGGGGAACTAATGAAAAACTGTTTTTT CSVGSRGTNEKLFF TRBV29-1*01 TRBJ1-4*01 104.0 4836.0 _CSVGSRGTNEKLFF 283 2558 EBV-BLMF1 EBV 0.55 2531 NEG 170 2388 12 EBV BLMF1 GLCTLVAML effector T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*02:01 B2M MHCI -2078 chip0420_536984 -1.67 7.17 Chip1 T1D_1 T1D TGTGCCAGCAGTCCATCCTCGTCGGGTGGTGAGCAGTACTTC CASSPSSSGGEQYF TRBV2*01 TRBJ2-7*01 22.0 1777.0 _CASSPSSSGGEQYF 1 5188 MART1-ALA MART1 0.65 269 MART1-ALA 162 5026 3 HomoSapiens MART1 ALAGIGILTV Naive T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*02:01 B2M MHCI -2079 chip0420_450577 10.19 7.33 Chip1 T1D_1 T1D TGTGCCGCGAAGGGGTATGACAAGATCATCTTT CAAKGYDKIIF TRAV8-1*01 TRAJ30*01 31.0 2213.0 TGTGCCAGCAGTCCGGACCAAACTAGCTCCTACAATGAGCAGTTCTTC CASSPDQTSSYNEQFF TRBV27*01 TRBJ2-1*01 115.0 4981.0 CAAKGYDKIIF_CASSPDQTSSYNEQFF 1 3690 EBV-BRLF1 EBV 1.0 1264 EBV-BRLF1 154 3536 10 EBV BRLF1 YVLDHLIVV effector memory T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*02:01 B2M MHCI -2080 chip0420_785953 8.74 10.49 Chip1 T1D_2 T1D TGTGCTGTGGGAGAGGGAAGGCTTT CAVG??gREGF TRAV2*01 TRAJ34*01 1.0 12.0 TGCGCCAGCAGGATGGGGGCCGGGGATACGCAGTATTTT CASRMGAGDTQYF TRBV10-2*01 TRBJ2-3*01 9.0 403.0 CAVG??gREGF_CASRMGAGDTQYF 1 4228 EBV-BLMF1 EBV 0.67 2531 NEG 174 4054 8 EBV BLMF1 GLCTLVAML effector memory T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*02:01 B2M MHCI -2081 chip0420_629758 9.13 10.64 Chip1 T1D_2 T1D TGCGCCAGCAGGATGGGGGCCGGGGATACGCAGTATTTT CASRMGAGDTQYF TRBV10-2*01 TRBJ2-3*01 29.0 2010.0 _CASRMGAGDTQYF 90 3457 EBV-BLMF1 EBV 0.75 2531 NEG 142 3315 9 EBV BLMF1 GLCTLVAML effector memory T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*02:01 B2M MHCI -2082 chip0420_471839 11.25 6.79 Chip1 T1D_2 T1D TGTGCCGTGAAAGTGGATGGCCAGAAGCTGCTCTTT CAVKVDGQKLLF TRAV8-1*01 TRAJ16*01 21.0 1934.0 CAVKVDGQKLLF_ 2 5455 EBV-BRLF1 EBV 0.96 1264 EBV-BRLF1 171 5284 10 EBV BRLF1 YVLDHLIVV effector memory T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*02:01 B2M MHCI -2083 chip0420_389912 -3.34 11.62 Chip1 T1D_1 T1D TGTGCAATGACCAGATCTAACTTTGGAAATGAGAAATTAACCCTT CAMTRSNFGNEKLTL TRAV12-3*01 TRAJ48*01 56.0 2090.0 CAMTRSNFGNEKLTL_ 1 5179 PGT-178 PGT 0.74 1480 PGT-178 139 5040 1 HomoSapiens PGT LLAGIGTVPI Naive T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*02:01 B2M MHCI -2084 chip0420_260748 -3.19 12.48 Chip1 T1D_1 T1D _ 6746 4050 PA-46-54 FLU 0.71 18 NEG 139 3911 1 InfluenzaA PA FMYSDFHFI Naive T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*02:01 B2M MHCI -2085 chip0420_243444 10.5 10.64 Chip1 T1D_1 T1D _ 6746 2820 EBV-BRLF1 EBV 0.68 1264 EBV-BRLF1 151 2669 9 EBV BRLF1 YVLDHLIVV effector memory T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*02:01 B2M MHCI -2086 chip0420_826567 -4.3 11.21 Chip1 T1D_1 T1D TGCCTCGTGGGTCTCGGGGGTCGCCGTGTCATTAACAAGCTCATCTTT CLVGLGGRRVINKLIF TRAV4*01 TRAJ32*01 22.0 2051.0 CLVGLGGRRVINKLIF_ 1 3639 HCVNS3-1073-1081 HCV 0.67 36 NEG 130 3509 1 HCV NS3 CINGVCWTV Naive T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*02:01 B2M MHCI -2087 chip0420_802001 12.04 7.97 Chip1 T1D_2 T1D TGCGCCAGCAGGATGGGGGCCGGGGATACGCAGTATTTT CASRMGAGDTQYF TRBV10-2*01 TRBJ2-3*01 25.0 1212.0 _CASRMGAGDTQYF 90 2433 EBV-BLMF1 EBV 0.83 2531 NEG 168 2265 10 EBV BLMF1 GLCTLVAML effector memory T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*02:01 B2M MHCI -2088 chip0420_779308 5.48 8.69 Chip1 T1D_1 T1D TGTGCTACGGAAGGGGCTTCAGGATACAGCACCCTCACCTTT CATEGASGYSTLTF TRAV17*01 TRAJ11*01 36.0 2110.0 TGTGCTGTGGAACCTGCTTACTACCTCAGGAACCTACAAATACATCTTT CAVEPAYY??cSGTYKYIF TRAV2*01 TRAJ40*01 41.0 2083.0 0.43 TGTGCCAGCAGTGTGCGGGGAGGTAACTATGGCTACACCTTC CASSVRGGNYGYTF TRBV6-1*01 TRBJ1-2*01 34.0 1981.0 CATEGASGYSTLTF_CASSVRGGNYGYTF 1 5397 EBV-LMP2-FLY EBV 0.64 355 NEG 145 5252 6 EBV LMP2 FLYALALLL central memory T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*02:01 B2M MHCI -2089 chip0420_299527 10.1 10.31 Chip1 T1D_2 T1D TGTGCCAACAGTTACATGTCCGGCGAAGCTTTCTTT CANSYMSGEAFF TRBV6-2*01,TRBV6-3*01 TRBJ1-1*01 33.0 2140.0 _CANSYMSGEAFF 1 3320 EBV-BRLF1 EBV 0.98 1264 EBV-BRLF1 140 3180 9 EBV BRLF1 YVLDHLIVV effector memory T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*02:01 B2M MHCI -2090 chip0420_274562 -3.47 11.58 Chip1 T1D_1 T1D TGTGCCAGCAGTGGACTCAGTGTGAATGAGCAGTTTCTT CASSGLSVNEQFL TRBV13*01 TRBJ2-1*01 1.0 29.0 _CASSGLSVNEQFL 1 4438 PGT-178 PGT 0.48 1480 PGT-178 176 4262 1 HomoSapiens PGT LLAGIGTVPI Naive T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*02:01 B2M MHCI -2091 chip0420_734092 9.87 9.63 Chip1 T1D_1 T1D TGTGCCAGCAGTCCGGACCATACTCGCTCCTACACTGAGCAGTTCTTC CASSPDHTRSYTEQFF TRBV27*01 TRBJ2-1*01 3.0 164.0 _CASSPDHTRSYTEQFF 1 4126 EBV-BRLF1 EBV 0.81 1264 EBV-BRLF1 137 3989 8 EBV BRLF1 YVLDHLIVV effector memory T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*02:01 B2M MHCI -2092 chip0420_627685 16.1 11.59 Chip1 T1D_2 T1D TGCAGCGTGGGGACAGGGGGAACTAATGAAAAACTGTTTTTT CSVGTGGTNEKLFF TRBV29-1*01 TRBJ1-4*01 104.0 5149.0 _CSVGTGGTNEKLFF 638 2272 EBV-BLMF1 EBV 0.75 2531 NEG 163 2109 12 EBV BLMF1 GLCTLVAML effector T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*02:01 B2M MHCI -2093 chip0420_825069 8.05 11.19 Chip1 T1D_2 T1D TGCAGCGTGGGGACAGGGGGAACTAATGAAAAACTGTTTTTT CSVGTGGTNEKLFF TRBV29-1*01 TRBJ1-4*01 115.0 4961.0 _CSVGTGGTNEKLFF 638 3912 EBV-BLMF1 EBV 0.5 2531 NEG 161 3751 7 EBV BLMF1 GLCTLVAML transitional T cells between effector and memory populations PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*02:01 B2M MHCI -2094 chip0420_267817 12.94 10.02 Chip1 T1D_2 T1D TGTGCAGAGAGTACTTCGGGAGGAAAGCTTATCTTC CAESTSGGKLIF TRAV5*01 TRAJ23*01 17.0 1609.0 TGCAGCGTGGGGACAGGGGGAACTAATGAAAAACTGTTTTTT CSVGTGGTNEKLFF TRBV29-1*01 TRBJ1-4*01 154.0 7551.0 CAESTSGGKLIF_CSVGTGGTNEKLFF 107 2796 EBV-BLMF1 EBV 0.71 2531 NEG 180 2616 12 EBV BLMF1 GLCTLVAML effector T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*02:01 B2M MHCI -2095 chip0420_447988 10.15 10.0 Chip1 T1D_1 T1D TGCAGCGTCGGCTCCAGGGGAACTAATGAAAAACTGTTTTTT CSVGSRGTNEKLFF TRBV29-1*01 TRBJ1-4*01 118.0 4350.0 _CSVGSRGTNEKLFF 283 5241 EBV-BLMF1 EBV 0.69 2531 NEG 157 5084 9 EBV BLMF1 GLCTLVAML effector memory T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*02:01 B2M MHCI -2096 chip0420_183757 -2.93 9.07 Chip1 T1D_1 T1D TGTGCCAGCAGTCCCGTCGGGAACACTGAAGCTTTCTTT CASSPVGNTEAFF TRAV14/DV4*01 TRAJ40*01 2.0 5.0 TGTGCCAGCAGTCCCGTCGGGAACACTGAAGCTTTCTTT CASSPVGNTEAFF TRBV2*01 TRBJ1-1*01 31.0 1854.0 CASSPVGNTEAFF_CASSPVGNTEAFF 1 5823 PGT-178 PGT 0.63 1480 PGT-178 149 5674 2 HomoSapiens PGT LLAGIGTVPI Naive T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*02:01 B2M MHCI -2097 chip0420_43084 10.82 8.09 Chip1 T1D_1 T1D TGTGCAGAGAGTACAAGTGGGGGAAAGCTTATCTTC CAESTSGGKLIF TRAV5*01 TRAJ23*01 10.0 826.0 TGCAGCGTCGGCTCCAGGGGAACTAATGAAAAACTGTTTTTT CSVGSRGTNEKLFF TRBV29-1*01 TRBJ1-4*01 104.0 5587.0 CAESTSGGKLIF_CSVGSRGTNEKLFF 19 2927 EBV-BLMF1 EBV 0.6 2531 NEG 176 2751 10 EBV BLMF1 GLCTLVAML effector memory T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*02:01 B2M MHCI -2098 chip0420_825303 9.74 11.21 Chip1 T1D_2 T1D TGCGCCAGCAGAGCGGGAGCCGGGGATACGCAGTATTTT CASRAGAGDTQYF TRBV10-2*01 TRBJ2-3*01 31.0 1981.0 _CASRAGAGDTQYF 59 3891 EBV-BLMF1 EBV 0.64 2531 NEG 167 3724 9 EBV BLMF1 GLCTLVAML effector memory T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*02:01 B2M MHCI -2099 chip0420_602036 12.59 8.3 Chip1 T1D_2 T1D TGCAGCGTTGACCAAAGGACAGGGCAAAAGAAGAACTATGGCTACACCTTC CSVDQRTGQKKNYGYTF TRBV29-1*01 TRBJ1-2*01 150.0 8291.0 _CSVDQRTGQKKNYGYTF 40 2436 EBV-BLMF1 EBV 0.82 2531 NEG 155 2281 10 EBV BLMF1 GLCTLVAML effector memory T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*02:01 B2M MHCI -2100 chip0420_326667 -0.89 6.51 Chip1 T1D_1 T1D TGTGCCAGCAGTGGAGACGACAGGGTATCGCGGGGCTACACCTTC CASSGDDRVSRGYTF TRBV2*01 TRBJ1-2*01 16.0 834.0 _CASSGDDRVSRGYTF 1 7141 PREINS-15-24 INS 0.61 3 PREINS-15-24 141 7000 3 HomoSapiens PREINS ALWGPDPAAA Naive T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*02:01 B2M MHCI -2101 chip0420_674050 12.28 6.34 Chip1 T1D_2 T1D TGTGCCAGCAGCTTAACTAGCGAGGACGGGGAGCTGTTTTTT CASSLTSEDGELFF TRBV11-3*01 TRBJ2-2*01 29.0 1533.0 _CASSLTSEDGELFF 1 4652 EBV-BLMF1 EBV 0.75 2531 NEG 187 4465 10 EBV BLMF1 GLCTLVAML effector memory T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*02:01 B2M MHCI -2102 chip0420_740345 5.62 10.83 Chip1 T1D_2 T1D TGTGCCAGCTCACTTCAGGGGGGTTCCTTCTATGGCTACACCTTC CASSLQGGSFYGYTF TRBV6-1*01 TRBJ1-2*01 5.0 189.0 _CASSLQGGSFYGYTF 1 6005 EBV-LMP2-FLY EBV 0.92 355 EBV-LMP2-FLY 159 5846 6 EBV LMP2 FLYALALLL central memory T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*02:01 B2M MHCI -2103 chip0420_565060 11.48 10.91 Chip1 T1D_2 T1D _ 6746 2767 EBV-BLMF1 EBV 1.0 2531 NEG 146 2621 9 EBV BLMF1 GLCTLVAML effector memory T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*02:01 B2M MHCI -2104 chip0420_245362 13.87 10.74 Chip1 T1D_1 T1D TGTGCCATCAGTGAGGGGACGCTGAGCTCCTACAATGAGCAGTTCTTC CAISEGTLSSYNEQFF TRBV10-3*01 TRBJ2-1*01 21.0 623.0 _CAISEGTLSSYNEQFF 7 2723 EBV-BRLF1 EBV 0.83 1264 NEG 164 2559 12 EBV BRLF1 YVLDHLIVV effector T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*02:01 B2M MHCI -2105 chip0420_626810 14.9 8.35 Chip1 T1D_1 T1D _ 6746 2772 EBV-BLMF1 EBV 0.65 2531 NEG 155 2617 12 EBV BLMF1 GLCTLVAML effector T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*02:01 B2M MHCI -2106 chip0420_613205 -3.24 8.48 Chip1 T1D_2 T1D TGTGCCAGCAGTGTACTAGGGGAACAGCAGTTCTTC CASSVLGEQQFF TRBV27*01 TRBJ2-1*01 11.0 761.0 _CASSVLGEQQFF 1 4499 INS-14-23 INS 0.7 9 INS-14-23 152 4347 2 HomoSapiens INS LALWGPDPAA Naive T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*02:01 B2M MHCI -2107 chip0420_373754 8.38 10.63 Chip1 T1D_2 T1D TGTGCCGTGAAGGACACCGACAAGCTCATCTTT CAVKDTDKLIF TRAV8-1*01 TRAJ34*01 30.0 2104.0 TGCAGCGTGGGGACAGAGGGAACTAATGAAAAACTGTTTTTT CSVGTEGTNEKLFF TRBV29-1*01 TRBJ1-4*01 2.0 33.0 CAVKDTDKLIF_CSVGTEGTNEKLFF 1 3437 EBV-BRLF1 EBV 1.0 1264 NEG 144 3293 8 EBV BRLF1 YVLDHLIVV effector memory T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*02:01 B2M MHCI -2108 chip0420_669340 5.81 12.08 Chip1 T1D_1 T1D _ 6746 5046 M1 FLU 0.71 1250 M1 141 4905 7 InfluenzaA M1 GILGFVFTL transitional T cells between effector and memory populations PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*02:01 B2M MHCI -2109 chip0420_823455 -2.24 10.36 Chip1 T1D_1 T1D _ 6746 5575 M1 FLU 0.44 1250 NEG 139 5436 3 InfluenzaA M1 GILGFVFTL Naive T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*02:01 B2M MHCI -2110 chip0420_457988 -3.49 12.98 Chip1 T1D_1 T1D TGTGCCAGCAACTTACATTTGGACAGCACGAACACCGGGGAGCTGTTTTTT CASNLHLDSTNTGELFF TRBV11-1*01 TRBJ2-2*01 24.0 1209.0 _CASNLHLDSTNTGELFF 1 3653 PGT-178 PGT 0.67 1480 PGT-178 136 3517 1 HomoSapiens PGT LLAGIGTVPI Naive T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*02:01 B2M MHCI -2111 chip0420_44156 6.18 13.1 Chip1 T1D_1 T1D _ 6746 5287 M1 FLU 0.9 1250 NEG 146 5141 7 InfluenzaA M1 GILGFVFTL transitional T cells between effector and memory populations PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*02:01 B2M MHCI -2112 chip0420_774917 15.35 11.61 Chip1 T1D_1 T1D TGTGCCGTGAAGGGGTATGACAAGATCATCTTT CAVKGYDKIIF TRAV8-1*01 TRAJ30*01 2.0 133.0 CAVKGYDKIIF_ 3 1757 EBV-BRLF1 EBV 1.0 1264 NEG 137 1620 12 EBV BRLF1 YVLDHLIVV effector T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*02:01 B2M MHCI -2113 chip0420_649421 10.63 6.83 Chip1 T1D_2 T1D TGCGCCAGCAGCCCATCGGGGGCGTACTATGGCTACACCTTC CASSPSGAYYGYTF TRBV5-1*01 TRBJ1-2*01 35.0 2234.0 _CASSPSGAYYGYTF 1 6719 EBV-LMP2A EBV 0.8 700 NEG 185 6534 10 EBV LMP2A CLGGLLTMV effector memory T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*02:01 B2M MHCI -2114 chip0420_471499 13.84 10.81 Chip1 T1D_1 T1D TGCAGTGCTAACGACCACACCTACAATGAGCAGTTTCTT CSANDHTYNEQFL TRBV20-1*01 TRBJ2-1*01 9.0 935.0 _CSANDHTYNEQFL 1 2362 EBV-BRLF1 EBV 0.81 1264 EBV-BRLF1 169 2193 12 EBV BRLF1 YVLDHLIVV effector T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*02:01 B2M MHCI -2115 chip0420_230610 12.94 8.38 Chip1 T1D_2 T1D TGCAGCGTGGGGACAGGGGGAACTAATGAAAAACTGTTTTTT CSVGTGGTNEKLFF TRBV29-1*01 TRBJ1-4*01 76.0 3944.0 _CSVGTGGTNEKLFF 638 1867 EBV-BLMF1 EBV 1.0 2531 NEG 150 1717 10 EBV BLMF1 GLCTLVAML effector memory T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*02:01 B2M MHCI -2116 chip0420_141945 13.48 7.85 Chip1 T1D_2 T1D TGTGCCAGCAGCGTAGGGGTTCTTAGCGCCGGGGAGCTGTTTTTT CASSVGVLSAGELFF TRBV9*01 TRBJ2-2*01 63.0 3365.0 _CASSVGVLSAGELFF 3 2994 EBV-BLMF1 EBV 0.62 2531 NEG 157 2837 10 EBV BLMF1 GLCTLVAML effector memory T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*02:01 B2M MHCI -2117 chip0420_44129 14.2 10.77 Chip1 T1D_2 T1D TGTGCCGTGAACCTATACAGCACCCTCACCTTT CAVNLYSTLTF TRAV8-1*01 TRAJ11*01 28.0 2113.0 TGTGCCAGCAGTTACATGTCCGGCGAAGCTTTCTTT CASSYMSGEAFF TRBV6-2*01,TRBV6-3*01 TRBJ1-1*01 18.0 943.0 CAVNLYSTLTF_CASSYMSGEAFF 1 2874 EBV-BRLF1 EBV 0.95 1264 EBV-BRLF1 158 2716 12 EBV BRLF1 YVLDHLIVV effector T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*02:01 B2M MHCI -2118 chip0420_106833 12.4 6.21 Chip1 T1D_1 T1D TGTGCTGTGGTCTCAAATTCCGGGTATGCACTCAACTTC CAVVSNSGYALNF TRAV12-2*01,TRAV21*01 TRAJ41*01 26.0 2099.0 TGTGCCAGCCGTTCCGGCGGGCACGTGGATACGCAGTATTTT CASRSGGHVDTQYF TRBV7-3*01 TRBJ2-3*01 16.0 770.0 CAVVSNSGYALNF_CASRSGGHVDTQYF 1 6150 EBV-BLMF1 EBV 0.47 2531 EBV-BLMF1 172 5978 10 EBV BLMF1 GLCTLVAML effector memory T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*02:01 B2M MHCI -2119 chip0420_82060 5.95 9.71 Chip1 T1D_2 T1D _ 6746 6393 EBV-LMP2-FLY EBV 0.97 355 EBV-LMP2-FLY 151 6242 6 EBV LMP2 FLYALALLL central memory T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*02:01 B2M MHCI -2120 chip0420_475662 11.18 8.88 Chip1 T1D_1 T1D TGCAGCGTGGGGACAGGGGGAACTAATGAAAAACTGTTTTTT CSVGTGGTNEKLFF TRBV29-1*01 TRBJ1-4*01 2.0 66.0 _CSVGTGGTNEKLFF 638 3260 EBV-BLMF1 EBV 0.44 2531 NEG 142 3118 10 EBV BLMF1 GLCTLVAML effector memory T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*02:01 B2M MHCI -2121 chip0420_53653 9.1 10.65 Chip1 T1D_2 T1D _ 6746 4323 EBV-BLMF1 EBV 1.0 2531 NEG 162 4161 9 EBV BLMF1 GLCTLVAML effector memory T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*02:01 B2M MHCI -2122 chip0420_715748 10.38 11.44 Chip1 T1D_1 T1D TGCAGCGTCGGCTCCAGGGGAACTAATGAAAAACTGTTTTTT CSVGSRGTNEKLFF TRBV29-1*01 TRBJ1-4*01 100.0 5185.0 _CSVGSRGTNEKLFF 283 2305 EBV-BLMF1 EBV 1.0 2531 NEG 144 2161 9 EBV BLMF1 GLCTLVAML effector memory T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*02:01 B2M MHCI -2123 chip0420_663715 12.2 7.35 Chip1 T1D_2 T1D TGCGCCAGCAGAGCGGGAGCCGGGGATACGCAGTTTTTT CASRAGAGDTQFF TRBV10-2*01 TRBJ2-3*01 13.0 620.0 _CASRAGAGDTQFF 1 3493 EBV-BLMF1 EBV 0.81 2531 NEG 157 3336 10 EBV BLMF1 GLCTLVAML effector memory T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*02:01 B2M MHCI -2124 chip0420_159227 -3.51 12.37 Chip1 T1D_1 T1D _ 6746 3697 CVB3-P3A CVB 0.64 77 NEG 139 3558 1 CoxsackievirusB P3A GIIYIIYKL Naive T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*02:01 B2M MHCI -2125 chip0420_52979 13.96 8.32 Chip1 T1D_1 T1D TGCAGCGTCGGCTCCAGGGGAACTAATGAAAAACTGTTTTTT CSVGSRGTNEKLFF TRBV29-1*01 TRBJ1-4*01 116.0 5644.0 _CSVGSRGTNEKLFF 283 2390 EBV-BLMF1 EBV 0.5 2531 NEG 145 2245 10 EBV BLMF1 GLCTLVAML effector memory T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*02:01 B2M MHCI -2126 chip0420_95618 14.89 12.13 Chip1 T1D_2 T1D _ 6746 1926 EBV-BLMF1 EBV 0.7 2531 NEG 141 1785 12 EBV BLMF1 GLCTLVAML effector T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*02:01 B2M MHCI -2127 chip0420_861191 -3.92 9.29 Chip1 T1D_1 T1D TGCGCCAGCAGCCAAGGACAGGGGCCTTTCACTGAAGCTTTCTTT CASSQGQGPFTEAFF TRBV5-1*01 TRBJ1-1*01 166.0 7705.0 _CASSQGQGPFTEAFF 1 5265 POL-132-140 HIV 0.69 37 NEG 155 5110 2 HIV-1 POL LVGPTPVNI Naive T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*02:01 B2M MHCI -2128 chip0420_817395 6.9 13.35 Chip1 T1D_2 T1D _ 6746 2896 M1 FLU 0.48 1250 NEG 140 2756 7 InfluenzaA M1 GILGFVFTL transitional T cells between effector and memory populations PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*02:01 B2M MHCI -2129 chip0420_814454 11.51 6.5 Chip1 T1D_1 T1D _ 6746 3703 EBV-BLMF1 EBV 0.73 2531 NEG 140 3563 10 EBV BLMF1 GLCTLVAML effector memory T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*02:01 B2M MHCI -2130 chip0420_347612 8.55 10.72 Chip1 T1D_2 T1D TGTGCCGTGAAGGACACCGACAAGCTCATCTTT CAVKDTDKLIF TRAV8-1*01 TRAJ34*01 1.0 12.0 CAVKDTDKLIF_ 56 3898 EBV-BRLF1 EBV 0.88 1264 EBV-BRLF1 156 3742 8 EBV BRLF1 YVLDHLIVV effector memory T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*02:01 B2M MHCI -2131 chip0420_95152 -0.39 9.39 Chip1 T1D_1 T1D _ 6746 5647 PGT-178 PGT 0.55 1480 PGT-178 131 5516 4 HomoSapiens PGT LLAGIGTVPI Naive T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*02:01 B2M MHCI -2132 chip0420_810907 13.92 10.68 Chip1 T1D_1 T1D TGTGCCCTCTATAACACCGACAAGCTCATCTTT CALYNTDKLIF TRAV9-2*01 TRAJ34*01 7.0 743.0 TGTGCCAGCAGCCCAGTTAGCGGGTCAACCTACGAGCAGTACTTC CASSPVSGSTYEQYF TRBV3-1*01 TRBJ2-7*01 14.0 641.0 CALYNTDKLIF_CASSPVSGSTYEQYF 15 2894 EBV-BLMF1 EBV 0.85 2531 EBV-BLMF1 156 2738 12 EBV BLMF1 GLCTLVAML effector T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*02:01 B2M MHCI -2133 chip0420_143686 9.6 10.68 Chip1 T1D_2 T1D TGTGCTGTCCTTATGGATAGCAACCATCAGTTAATCTGG CAVLMDSNHQLIW TRAV12-3*01 TRAJ33*01 1.0 14.0 TGCAGCGTGGGGACAGGGGGAACTAATGAAAAACTGTTTTTT CSVGTGGTNEKLFF TRBV29-1*01 TRBJ1-4*01 37.0 1988.0 CAVLMDSNHQLIW_CSVGTGGTNEKLFF 1 3735 EBV-BLMF1 EBV 0.75 2531 NEG 133 3602 9 EBV BLMF1 GLCTLVAML effector memory T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*02:01 B2M MHCI -2134 chip0420_659178 -0.71 10.2 Chip1 T1D_2 T1D _ 6746 5304 DUF5119-124-133 DUF5119 0.44 7 NEG 147 5157 3 HomoSapiens DUF5119 MVWGPDPLYV Naive T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*02:01 B2M MHCI -2135 chip0420_249445 12.5 6.88 Chip1 T1D_2 T1D TGCGCCAGCAGGATGGGGGCCGGGGATACGCAGTATTTT CASRMGAGDTQYF TRBV10-2*01 TRBJ2-3*01 26.0 1308.0 _CASRMGAGDTQYF 90 2560 EBV-BLMF1 EBV 0.75 2531 NEG 171 2389 10 EBV BLMF1 GLCTLVAML effector memory T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*02:01 B2M MHCI -2136 chip0420_858910 -1.51 11.59 Chip1 T1D_1 T1D TGCAGCGTTGATTCAGGGATTAGCACCGGGGAGCTGTTTTTT CSVDSGISTGELFF TRBV29-1*01 TRBJ2-2*01 44.0 2233.0 _CSVDSGISTGELFF 1 4781 EBV-LMP1-2 EBV 0.62 41 NEG 152 4629 3 EBV LMP1 YLQQNWWTL Naive T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*02:01 B2M MHCI -2137 chip0420_826970 7.09 13.21 Chip1 T1D_1 T1D TGTGCCAGTAGTAGCAGGAGCTCCTACGAGCAGTACTTC CASSSRSSYEQYF TRBV19*01 TRBJ2-7*01 4.0 292.0 _CASSSRSSYEQYF 2 3475 M1 FLU 0.78 1250 M1 161 3314 7 InfluenzaA M1 GILGFVFTL transitional T cells between effector and memory populations PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*02:01 B2M MHCI -2138 chip0420_29820 13.02 10.22 Chip1 T1D_1 T1D TGTGCCACCCAACAGGGGGGGGACAGTCAGCCCCAGCATTTT CATQQGGDSQPQHF TRBV28*01 TRBJ1-5*01 42.0 1323.0 _CATQQGGDSQPQHF 1 2285 EBV-BLMF1 EBV 0.57 2531 NEG 153 2132 9 EBV BLMF1 GLCTLVAML effector memory T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*02:01 B2M MHCI -2139 chip0420_597258 -1.53 10.07 Chip1 T1D_1 T1D TGTGCCAGCGGGGGACCGGGACAGAACTATGGCTACACCTTC CASGGPGQNYGYTF TRBV6-1*01 TRBJ1-2*01 47.0 2319.0 _CASGGPGQNYGYTF 1 5372 PGT-178 PGT 0.74 1480 PGT-178 126 5246 3 HomoSapiens PGT LLAGIGTVPI Naive T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*02:01 B2M MHCI -2140 chip0420_522525 5.97 12.7 Chip1 T1D_1 T1D TGTGCCAGTAGTTTTGGAGCCGGGGAGCTGTTTTTT CASSFGAGELFF TRBV19*01 TRBJ2-2*01 20.0 1885.0 _CASSFGAGELFF 5 3739 M1 FLU 0.95 1250 M1 154 3585 7 InfluenzaA M1 GILGFVFTL transitional T cells between effector and memory populations PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*02:01 B2M MHCI -2141 chip0420_324252 15.36 11.66 Chip1 T1D_1 T1D _ 6746 2230 EBV-BLMF1 EBV 0.5 2531 NEG 156 2074 12 EBV BLMF1 GLCTLVAML effector T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*02:01 B2M MHCI -2142 chip0420_185935 6.39 12.33 Chip1 healthy_1 healthy TGCGCCAGCAGCGCGGGACAGGGACTTCCCTACGAGCAGTACTTC CASSAGQGLPYEQYF TRBV5-1*01 TRBJ2-7*01 8.0 292.0 _CASSAGQGLPYEQYF 9 5259 M1 FLU 0.94 1250 M1 149 5110 7 InfluenzaA M1 GILGFVFTL transitional T cells between effector and memory populations PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*02:01 B2M MHCI -2143 chip0420_677632 10.29 11.28 Chip1 T1D_1 T1D _ 6746 3896 EBV-BRLF1 EBV 0.89 1264 NEG 159 3737 9 EBV BRLF1 YVLDHLIVV effector memory T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*02:01 B2M MHCI -2144 chip0420_654641 8.82 7.99 Chip1 tet_neg TGTGCTCCCCTTATAATTCAGGGAGCCCAGAAGCTGGTATTT CAPLIIQGAQKLVF TRAV41*01 TRAJ54*01 8.0 657.0 CAPLIIQGAQKLVF_ 1 5093 PGT-178 PGT 0.76 1480 PGT-178 156 4937 8 HomoSapiens PGT LLAGIGTVPI effector memory T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*02:01 B2M MHCI -2145 chip0420_319764 9.74 7.55 Chip1 T1D_2 T1D _ 6746 3856 EBV-BLMF1 EBV 0.82 2531 NEG 166 3690 10 EBV BLMF1 GLCTLVAML effector memory T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*02:01 B2M MHCI -2146 chip0420_152121 12.37 12.79 Chip1 T1D_1 T1D TGCAGCGTCGGCTCCAGGGGAACTAATGAAAAACTGTTTTTT CSVGSRGTNEKLFF TRBV29-1*01 TRBJ1-4*01 103.0 5755.0 _CSVGSRGTNEKLFF 283 3065 EBV-BLMF1 EBV 0.6 2531 NEG 160 2905 11 EBV BLMF1 GLCTLVAML effector T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*02:01 B2M MHCI -2147 chip0420_710527 11.96 11.13 Chip1 T1D_1 T1D TGTGCCAGCAGTGACGGTCGGGTCCACCCGGGGACCCAGTACTTC CASSDGRVHPGTQYF TRBV2*01 TRBJ2-5*01 72.0 3928.0 _CASSDGRVHPGTQYF 24 3046 EBV-BLMF1 EBV 0.56 2531 NEG 153 2893 9 EBV BLMF1 GLCTLVAML effector memory T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*02:01 B2M MHCI -2148 chip0420_334059 13.01 10.19 Chip1 T1D_2 T1D TGCAGCGTGGGGACAGGGGGAACTAATGAAAAACTGTTTTTT CSVGTGGTNEKLFF TRBV29-1*01 TRBJ1-4*01 32.0 1652.0 _CSVGTGGTNEKLFF 638 2757 EBV-BLMF1 EBV 0.57 2531 NEG 154 2603 9 EBV BLMF1 GLCTLVAML effector memory T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*02:01 B2M MHCI -2149 chip0420_82729 16.39 10.76 Chip1 T1D_2 T1D TGCAGCGTGGGGACAGGGGGAACTAATGAAAAACTGTTTTTT CSVGTGGTNEKLFF TRBV29-1*01 TRBJ1-4*01 133.0 7181.0 _CSVGTGGTNEKLFF 638 2510 EBV-BLMF1 EBV 0.75 2531 NEG 148 2362 12 EBV BLMF1 GLCTLVAML effector T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*02:01 B2M MHCI -2150 chip0420_31217 10.87 10.64 Chip1 T1D_1 T1D TGCAGCGTCGGCTCCAGGGGAACTAATGAAAAACTGTTTTTT CSVGSRGTNEKLFF TRBV29-1*01 TRBJ1-4*01 121.0 5560.0 _CSVGSRGTNEKLFF 283 4369 EBV-BLMF1 EBV 0.75 2531 NEG 150 4219 9 EBV BLMF1 GLCTLVAML effector memory T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*02:01 B2M MHCI -2151 chip0420_863595 5.5 11.96 Chip1 T1D_2 T1D TGTGCCACCTCGGGACGGAGCACAGATACGCAGTATTTT CATSGRSTDTQYF TRBV19*01 TRBJ2-3*01 64.0 4169.0 _CATSGRSTDTQYF 1 5136 M1 FLU 0.82 1250 NEG 153 4983 7 InfluenzaA M1 GILGFVFTL transitional T cells between effector and memory populations PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*02:01 B2M MHCI -2152 chip0420_399995 15.41 10.05 Chip1 T1D_1 T1D TGCATCCTGAGACGCTATGGAGGAAGCCAAGGAAATCTCATCTTT CILRRYGGSQGNLIF TRAV26-2*01 TRAJ42*01 2.0 170.0 TGTGCCAGCAGCCCAGTTAGCGGGTCAACCTACGAGCAGTACTTC CASSPVSGSTYEQYF TRBV3-1*01 TRBJ2-7*01 58.0 3621.0 CILRRYGGSQGNLIF_CASSPVSGSTYEQYF 8 2928 EBV-BLMF1 EBV 0.62 2531 NEG 149 2779 12 EBV BLMF1 GLCTLVAML effector T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*02:01 B2M MHCI -2153 chip0420_102744 13.35 10.36 Chip1 T1D_1 T1D TGTGCCACCCAACAGGGGAGGGACAGTCAGCCCCAGCATTTT CATQQGRDSQPQHF TRBV28*01 TRBJ1-5*01 42.0 2262.0 _CATQQGRDSQPQHF 52 5831 EBV-BLMF1 EBV 0.93 2531 NEG 145 5686 9 EBV BLMF1 GLCTLVAML effector memory T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*02:01 B2M MHCI -2154 chip0420_762528 11.91 10.75 Chip1 T1D_2 T1D TGTGCAGAGAGTACTTCGGGAGGAAAGCTTATCTTC CAESTSGGKLIF TRAV5*01 TRAJ23*01 21.0 1789.0 TGCAGCGTGGGGACAGGGGGAACTAATGAAAAACTGTTTTTT CSVGTGGTNEKLFF TRBV29-1*01 TRBJ1-4*01 114.0 4571.0 CAESTSGGKLIF_CSVGTGGTNEKLFF 107 3902 EBV-BLMF1 EBV 0.6 2531 NEG 172 3730 9 EBV BLMF1 GLCTLVAML effector memory T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*02:01 B2M MHCI -2155 chip0420_265016 9.37 10.45 Chip1 T1D_2 T1D TGTGCAGCATACGCAGGCAACATGCTCACCTTT CAAYAGNMLTF TRAV29/DV5*01 TRAJ39*01 26.0 2298.0 TGCGCCAGCAGGATGGGGGCCGGGGATACGCAGTATTTT CASRMGAGDTQYF TRBV10-2*01 TRBJ2-3*01 1.0 37.0 CAAYAGNMLTF_CASRMGAGDTQYF 21 3765 EBV-BLMF1 EBV 0.8 2531 NEG 154 3611 9 EBV BLMF1 GLCTLVAML effector memory T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*02:01 B2M MHCI -2156 chip0420_812870 9.8 9.17 Chip1 T1D_1 T1D TGTGTGGTGAACGGGGAGGATAGCAGCTATAAATTGATCTTC CVVNGEDSSYKLIF TRAV12-1*01 TRAJ12*01 31.0 1987.0 TGTGCCAGCAGTGAAGGGCGAGTCTCTCCGGGCGAAGCTTTCTTG CASSEGRVSPGEAFL TRBV2*01 TRBJ1-1*01 37.0 3023.0 CVVNGEDSSYKLIF_CASSEGRVSPGEAFL 1 6411 EBV-BLMF1 EBV 0.53 2531 NEG 138 6273 8 EBV BLMF1 GLCTLVAML effector memory T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*02:01 B2M MHCI -2157 chip0420_175883 6.57 14.59 Chip1 T1D_1 T1D TGTGCCAGTAGTATAAATGGGGGCCGGAGGGATGGCTACACCTTC CASSINGGRRDGYTF TRBV19*01 TRBJ1-2*01 44.0 1909.0 _CASSINGGRRDGYTF 32 4301 M1 FLU 0.88 1250 M1 175 4126 7 InfluenzaA M1 GILGFVFTL transitional T cells between effector and memory populations PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*02:01 B2M MHCI -2158 chip0420_609415 12.59 8.83 Chip1 T1D_2 T1D TGTGCTATGAGTGAACACTAAATACCAATGCCAGACTCATGTTT CAMSEH*a?tTNARLMF TRAV8-6*01 TRAJ31*01 47.0 1780.0 CAMSEH*a?tTNARLMF_ 1 1792 EBV-BRLF1 EBV 1.0 1264 NEG 149 1643 10 EBV BRLF1 YVLDHLIVV effector memory T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*02:01 B2M MHCI -2159 chip0420_394386 10.55 9.12 Chip1 T1D_2 T1D _ 6746 5035 EBV-LMP2A EBV 0.97 700 EBV-LMP2A 155 4880 10 EBV LMP2A CLGGLLTMV effector memory T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*02:01 B2M MHCI -2160 chip0420_84822 5.57 10.75 Chip1 T1D_2 T1D TGTGCTCCGCTGCTGCCTCGCCCCTACCACTTAATCTGG CAPLLPRPYHLIW TRAV21*01,TRAV12-3*01 TRAJ33*01 4.0 267.0 TGCGCCAGCAGCGAGGACGGTATGAACACTGAAGCTTTCTTT CASSEDGMNTEAFF TRBV10-2*01 TRBJ1-1*01 37.0 1701.0 CAPLLPRPYHLIW_CASSEDGMNTEAFF 1 6348 EBV-LMP2A EBV 0.9 700 EBV-LMP2A 144 6204 6 EBV LMP2A CLGGLLTMV central memory T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*02:01 B2M MHCI -2161 chip0420_372727 15.24 9.54 Chip1 T1D_1 T1D TGTGCCAGCAGCCAAAGCCCGGGTGGTACGCAGTATTTT CASSQSPGGTQYF TRBV14*01 TRBJ2-3*01 14.0 582.0 _CASSQSPGGTQYF 94 2530 EBV-BLMF1 EBV 0.64 2531 NEG 170 2360 12 EBV BLMF1 GLCTLVAML effector T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*02:01 B2M MHCI -2162 chip0420_137425 -2.08 12.68 Chip1 T1D_1 T1D TGTGCAGCAAGCGCGGACACCGGTAACCAGTTCTATTTT CAASADTGNQFYF TRAV29/DV5*01 TRAJ49*01 10.0 977.0 TGCAGCGTCGGCTCCAGGGGAACTAATGAAAAACTGTTTTTT CSVGSRGTNEKLFF TRBV29-1*01 TRBJ1-4*01 2.0 75.0 CAASADTGNQFYF_CSVGSRGTNEKLFF 1 4452 GP160-311-320 HIV 0.67 109 NEG 142 4310 1 HIV-1 GP160 RGPGRAFVTI Naive T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*02:01 B2M MHCI -2163 chip0420_409658 9.94 10.32 Chip1 T1D_2 T1D TGCGCCAGCAGTCAATCGAGAGGGTCGCTCTGGGATACGCAGTATTTT CASSQSRGSLWDTQYF TRBV4-3*01 TRBJ2-3*01 10.0 355.0 _CASSQSRGSLWDTQYF 21 3448 EBV-BRLF1 EBV 0.94 1264 EBV-BRLF1 169 3279 9 EBV BRLF1 YVLDHLIVV effector memory T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*02:01 B2M MHCI -2164 chip0420_209885 12.37 8.9 Chip1 T1D_1 T1D _ 6746 2400 EBV-BLMF1 EBV 0.8 2531 NEG 149 2251 10 EBV BLMF1 GLCTLVAML effector memory T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*02:01 B2M MHCI -2165 chip0420_638402 9.88 9.82 Chip1 T1D_1 T1D _ 6746 3818 EBV-BLMF1 EBV 0.43 2531 NEG 136 3682 9 EBV BLMF1 GLCTLVAML effector memory T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*02:01 B2M MHCI -2166 chip0420_363685 7.26 13.47 Chip1 T1D_1 T1D TGTGCCAGCAGCGTAACCGGGACTAGCGCCGGGGAGCTGTTTTTT CASSVTGTSAGELFF TRBV7-2*01 TRBJ2-2*01 2.0 43.0 _CASSVTGTSAGELFF 2 3876 M1 FLU 0.82 1250 NEG 173 3703 7 InfluenzaA M1 GILGFVFTL transitional T cells between effector and memory populations PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*02:01 B2M MHCI -2167 chip0420_187389 9.69 10.86 Chip1 T1D_2 T1D _ 6746 3672 EBV-BLMF1 EBV 1.0 2531 NEG 169 3503 9 EBV BLMF1 GLCTLVAML effector memory T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*02:01 B2M MHCI -2168 chip0420_558845 15.02 9.47 Chip1 T1D_1 T1D TGTGCCGTGAAGGACACCGACAAGCTCATCTTC CAVKDTDKLIF TRAV8-1*01 TRAJ34*01 25.0 2113.0 TGTGCCAGTAGTCCCCACTTGGGCGCGGCGGCCGAGCAGTACTTC CASSPHLGAAAEQYF TRBV19*01 TRBJ2-7*01 26.0 1673.0 CAVKDTDKLIF_CASSPHLGAAAEQYF 3 4254 EBV-BRLF1 EBV 0.76 1264 EBV-BRLF1 148 4106 12 EBV BRLF1 YVLDHLIVV effector T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*02:01 B2M MHCI -2169 chip0420_166015 -1.15 8.67 Chip1 T1D_1 T1D TGTGCCGGACCCGGAGGAAGCCAAGGAAATCTCATCTTT CAGPGGSQGNLIF TRAV12-2*01 TRAJ42*01 2.0 29.0 TGTGCCAGCAGCCAGACAGATCCCTACGAGCAGTACTTC CASSQTDPYEQYF TRBV5-4*01 TRBJ2-7*01 47.0 2463.0 CAGPGGSQGNLIF_CASSQTDPYEQYF 1 5417 ZNT8-145-153 ZNT8 0.41 14 ZNT8-145-153 142 5275 3 HomoSapiens ZNT8 LLSILCIWV Naive T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*02:01 B2M MHCI -2170 chip0420_637615 8.84 13.78 Chip1 healthy_1 healthy TGTGCTGGAGCGGGGAGCCAAGGAAATCTCATCTTT CAGAGSQGNLIF TRAV27*01 TRAJ42*01 47.0 2533.0 CAGAGSQGNLIF_ 3 2306 M1 FLU 0.73 1250 NEG 123 2183 11 InfluenzaA M1 GILGFVFTL effector T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*02:01 B2M MHCI -2171 chip0420_425884 12.18 7.1 Chip1 T1D_2 T1D TGCAGCGTGGGGACAGGGGGAACTAATGAAAAACTGTTTTTT CSVGTGGTNEKLFF TRBV29-1*01 TRBJ1-4*01 52.0 2406.0 _CSVGTGGTNEKLFF 638 3169 EBV-BLMF1 EBV 0.75 2531 NEG 138 3031 10 EBV BLMF1 GLCTLVAML effector memory T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*02:01 B2M MHCI -2172 chip0420_116617 12.14 6.97 Chip1 T1D_1 T1D TGCAGTGCTGCCGACCAAACCTACAATGAGCAGTTCTTC CSAADQTYNEQFF TRBV20-1*01 TRBJ2-1*01 1.0 18.0 _CSAADQTYNEQFF 5 4838 EBV-BRLF1 EBV 0.94 1264 EBV-BRLF1 168 4670 10 EBV BRLF1 YVLDHLIVV effector memory T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*02:01 B2M MHCI -2173 chip0420_214694 12.85 8.15 Chip1 T1D_2 T1D TGTGCCAGCAGCCCCTCGACTAGCGGGAGTGGGGAGACCCAGTACTTC CASSPSTSGSGETQYF TRBV3-1*01 TRBJ2-5*01 23.0 1220.0 _CASSPSTSGSGETQYF 18 2192 EBV-BRLF1 EBV 0.84 1264 EBV-BRLF1 146 2046 10 EBV BRLF1 YVLDHLIVV effector memory T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*02:01 B2M MHCI -2174 chip0420_206155 11.48 7.54 Chip1 healthy_2 healthy TGTGCCAGCAGCTCCAGACTAGCCACAGATACGCAGTATTTT CASSSRLATDTQYF TRBV7-3*01,TRBV7-9*01 TRBJ2-3*01 2.0 81.0 _CASSSRLATDTQYF 1 3134 BZLF1-190-197 EBV 0.95 2156 BZLF1-190-197 155 2979 10 EBV BZLF1 RAKFKQLL effector memory T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-B*08:01 B2M MHCI -2175 chip0420_587552 11.37 7.42 Chip1 T1D_1 T1D _ 6746 3759 EBV-LMP2-FLY EBV 0.56 355 EBV-LMP2-FLY 154 3605 10 EBV LMP2 FLYALALLL effector memory T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*02:01 B2M MHCI -2176 chip0420_23606 8.88 8.87 Chip1 T1D_2 T1D TGCGCCAGCAGTCAATCGCGAGGGTCGCTCTGGGATACGCAGTATTTT CASSQSRGSLWDTQYF TRBV4-3*01 TRBJ2-3*01 33.0 1424.0 _CASSQSRGSLWDTQYF 21 4408 EBV-BRLF1 EBV 0.87 1264 EBV-BRLF1 151 4257 8 EBV BRLF1 YVLDHLIVV effector memory T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*02:01 B2M MHCI -2177 chip0420_818967 11.51 7.6 Chip1 T1D_1 T1D TGTGCCAGCAGCCAAAGCCCGGGTGGTACGCAGTATTTT CASSQSPGGTQYF TRBV14*01 TRBJ2-3*01 20.0 1232.0 _CASSQSPGGTQYF 94 4691 EBV-BLMF1 EBV 0.5 2531 NEG 164 4527 10 EBV BLMF1 GLCTLVAML effector memory T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*02:01 B2M MHCI -2178 chip0420_644796 -2.47 12.85 Chip1 T1D_1 T1D _ 6746 4526 EBV-LMP2A EBV 0.72 700 NEG 148 4378 1 EBV LMP2A CLGGLLTMV Naive T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*02:01 B2M MHCI -2179 chip0420_558300 10.86 6.92 Chip1 T1D_1 T1D TGTGTGGTGAACGGACGGGATAGCAGCTATAAATTGATCTTC CVVNGRDSSYKLIF TRAV12-1*01 TRAJ12*01 46.0 2084.0 TGTGCCAGCAGTGACGGTCGGGTCCACCCGGGGACCCAGTACTTC CASSDGRVHPGTQYF TRBV2*01 TRBJ2-5*01 9.0 413.0 CVVNGRDSSYKLIF_CASSDGRVHPGTQYF 14 4014 EBV-BLMF1 EBV 1.0 2531 NEG 173 3841 10 EBV BLMF1 GLCTLVAML effector memory T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*02:01 B2M MHCI -2180 chip0420_683614 -2.93 9.61 Chip1 T1D_1 T1D TGTGCAATGAGCCAATCTAACTTCGGAAATGAGAAATTAACCTTT CAMSQSNFGNEKLTF TRAV12-3*01 TRAJ48*01 55.0 1968.0 CAMSQSNFGNEKLTF_ 1 5694 PGT-178 PGT 0.75 1480 PGT-178 158 5536 2 HomoSapiens PGT LLAGIGTVPI Naive T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*02:01 B2M MHCI -2181 chip0420_170083 9.71 9.72 Chip1 T1D_1 T1D _ 6746 4340 EBV-BLMF1 EBV 0.81 2531 EBV-BLMF1 159 4181 8 EBV BLMF1 GLCTLVAML effector memory T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*02:01 B2M MHCI -2182 chip0420_82388 12.12 10.38 Chip1 T1D_2 T1D TGCAGCGTGGGGACAGGGGGAACTAATGAAAAACTGTTTTTT CSVGTGGTNEKLFF TRBV29-1*01 TRBJ1-4*01 88.0 4705.0 _CSVGTGGTNEKLFF 638 3375 EBV-BLMF1 EBV 0.56 2531 NEG 155 3220 9 EBV BLMF1 GLCTLVAML effector memory T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*02:01 B2M MHCI -2183 chip0420_688159 9.2 8.73 Chip1 T1D_2 T1D TGTGCCAGCAGCTTAGGGCAGGGGGCAGTCTACGAGCAGTACTTC CASSLGQGAVYEQYF TRBV11-2*01 TRBJ2-7*01 33.0 1550.0 _CASSLGQGAVYEQYF 2 4428 PGT-178 PGT 0.67 1480 PGT-178 180 4248 8 HomoSapiens PGT LLAGIGTVPI effector memory T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*02:01 B2M MHCI -2184 chip0420_650856 11.17 12.58 Chip1 T1D_1 T1D _ 6746 2561 M1 FLU 0.78 1250 M1 160 2401 11 InfluenzaA M1 GILGFVFTL effector T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*02:01 B2M MHCI -2185 chip0420_92464 -4.18 9.39 Chip1 T1D_1 T1D TGTGCCAGCCATAGTGGAGGATCCACCGGGGATCTGTTTTTC CASHSGGSTGDLFF TRBV27*01 TRBJ2-2*01 2.0 164.0 _CASHSGGSTGDLFF 1 5774 ZNT8-16-24 ZNT8 0.87 39 ZNT8-16-24 159 5615 2 HomoSapiens ZNT8 KMYAFTLES Naive T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*02:01 B2M MHCI -2186 chip0420_609958 -2.7 15.05 Chip1 T1D_1 T1D _ 6746 1933 KI10 FLU 1.0 2 NEG 152 1781 1 InfluenzaA HA KLYQNPTTYI Naive T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*02:01 B2M MHCI -2187 chip0420_556299 10.94 7.55 Chip1 T1D_1 T1D _ 6746 6101 EBV-BLMF1 EBV 0.78 2531 EBV-BLMF1 171 5930 10 EBV BLMF1 GLCTLVAML effector memory T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*02:01 B2M MHCI -2188 chip0420_148040 15.01 10.53 Chip1 T1D_1 T1D TGTGTGGTGAACGGGGGGGATAGCAGCTATAAATTGATCTTC CVVNGGDSSYKLIF TRAV12-1*01 TRAJ12*01 46.0 2156.0 TGTGCCAGCAGTTCGGGACAGGTACTTCCCAATGAGCAGTTCTTC CASSSGQVLPNEQFF TRBV2*01 TRBJ2-1*01 35.0 2522.0 CVVNGGDSSYKLIF_CASSSGQVLPNEQFF 31 2464 EBV-BLMF1 EBV 0.62 2531 NEG 158 2306 12 EBV BLMF1 GLCTLVAML effector T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*02:01 B2M MHCI -2189 chip0420_21883 -3.03 10.6 Chip1 T1D_2 T1D TGTGCCAGCAGCTTGGAGGGACTAGCGGAAAATACGCAGTATTTT CASSLEGLAENTQYF TRBV5-6*01 TRBJ2-3*01 34.0 1492.0 _CASSLEGLAENTQYF 1 3588 PGT-178 PGT 0.56 1480 PGT-178 134 3454 3 HomoSapiens PGT LLAGIGTVPI Naive T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*02:01 B2M MHCI -2190 chip0420_652908 12.74 7.74 Chip1 T1D_1 T1D _ 6746 3577 EBV-BLMF1 EBV 0.62 2531 NEG 150 3427 10 EBV BLMF1 GLCTLVAML effector memory T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*02:01 B2M MHCI -2191 chip0420_423737 7.22 14.18 Chip1 T1D_1 T1D TGTGCAGTTTCGTTATGGTCAGAATTTTGTCTTT CAVSLtg??gtQNFVF TRAV13-1*01 TRAJ26*01 1.0 22.0 CAVSLtg??gtQNFVF_ 2 2776 M1 FLU 0.8 1250 M1 142 2634 7 InfluenzaA M1 GILGFVFTL transitional T cells between effector and memory populations PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*02:01 B2M MHCI -2192 chip0420_321001 8.97 7.62 Chip1 tet_neg TGTGCAGCAAGCGAGCTTACTGGAGCCAATAGTAAGCTGACATTT CAASELTGANSKLTF TRAV29/DV5*01 TRAJ56*01 40.0 2017.0 TGCGGCACAGCGGAACCTAACGACTACAAGCTCAGCTTT CGTAEPNDYKLSF TRAV30*01 TRAJ20*01 34.0 2027.0 0.4 CAASELTGANSKLTF_ 1 5748 EBV-BLMF1 EBV 0.59 2531 EBV-BLMF1 173 5575 8 EBV BLMF1 GLCTLVAML effector memory T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*02:01 B2M MHCI -2193 chip0420_129144 10.46 9.13 Chip1 T1D_1 T1D TGTGCCAGCAGCACGGGACAGCTATCGAACACCGGGGAGCTGTTTTTT CASSTGQLSNTGELFF TRBV9*01 TRBJ2-2*01 1.0 42.0 _CASSTGQLSNTGELFF 82 4369 EBV-BLMF1 EBV 0.52 2531 NEG 146 4223 10 EBV BLMF1 GLCTLVAML effector memory T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*02:01 B2M MHCI -2194 chip0420_857831 9.82 10.12 Chip1 T1D_2 T1D TGCGCCAGCAGGATGGGGGCCGGGGATACGCAGTATTTT CASRMGAGDTQYF TRBV10-2*01 TRBJ2-3*01 28.0 1526.0 _CASRMGAGDTQYF 90 2820 EBV-BLMF1 EBV 0.57 2531 NEG 135 2685 9 EBV BLMF1 GLCTLVAML effector memory T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*02:01 B2M MHCI -2195 chip0420_766555 6.91 11.79 Chip1 T1D_1 T1D _ 6746 4775 M1 FLU 0.76 1250 M1 165 4610 7 InfluenzaA M1 GILGFVFTL transitional T cells between effector and memory populations PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*02:01 B2M MHCI -2196 chip0420_653285 13.69 9.36 Chip1 T1D_1 T1D _ 6746 3815 EBV-BLMF1 EBV 0.5 2531 NEG 158 3657 12 EBV BLMF1 GLCTLVAML effector T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*02:01 B2M MHCI -2197 chip0420_596892 10.65 11.71 Chip1 T1D_1 T1D TGTGCCAGCAGCCCAGTTAGCGGGTCAACCTACGAGCAGTACTTC CASSPVSGSTYEQYF TRBV3-1*01 TRBJ2-7*01 13.0 512.0 _CASSPVSGSTYEQYF 80 3394 EBV-BLMF1 EBV 0.79 2531 EBV-BLMF1 160 3234 9 EBV BLMF1 GLCTLVAML effector memory T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*02:01 B2M MHCI -2198 chip0420_62503 -2.19 11.01 Chip1 T1D_2 T1D TGTGCCAGCAGCCCGTCCGAGGGAAACACCGGGGAGCTGTTTTTT CASSPSEGNTGELFF TRBV4-2*01 TRBJ2-2*01 26.0 912.0 _CASSPSEGNTGELFF 1 3108 MART1-ALA MART1 0.76 269 MART1-ALA 154 2954 3 HomoSapiens MART1 ALAGIGILTV Naive T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*02:01 B2M MHCI -2199 chip0420_514693 11.87 11.26 Chip1 T1D_1 T1D _ 6746 3508 EBV-BLMF1 EBV 0.89 2531 EBV-BLMF1 136 3372 9 EBV BLMF1 GLCTLVAML effector memory T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*02:01 B2M MHCI -2200 chip0420_220224 5.29 8.87 Chip1 healthy_1 healthy TGTGCCAGTAGTAACCCCGACAGGACAGAAAGAACTGAAGCTTTCTTT CASSNPDRTERTEAFF TRBV19*01 TRBJ1-1*01 23.0 580.0 _CASSNPDRTERTEAFF 1 3066 M1 FLU 0.97 1250 M1 136 2930 6 InfluenzaA M1 GILGFVFTL central memory T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*02:01 B2M MHCI -2201 chip0420_55582 -1.78 11.15 Chip1 T1D_1 T1D TGTGCCAGCAGTTCCGACAGGGATTATTTCAATCAGCCCCAGCATTTT CASSSDRDYFNQPQHF TRBV28*01 TRBJ1-5*01 36.0 1317.0 _CASSSDRDYFNQPQHF 1 4662 HCVNS3-1406-1415 HCV 0.45 12 NEG 149 4513 3 HCV NS3 KLVALGINAV Naive T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*02:01 B2M MHCI -2202 chip0420_805550 12.2 8.64 Chip1 T1D_2 T1D TGTGCCAGCAGTGCCCTATTGGGGGGCGCCTATGGCTACACCTTC CASSALLGGAYGYTF TRBV27*01 TRBJ1-2*01 3.0 102.0 _CASSALLGGAYGYTF 6 2853 EBV-BRLF1 EBV 0.85 1264 EBV-BRLF1 133 2720 10 EBV BRLF1 YVLDHLIVV effector memory T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*02:01 B2M MHCI -2203 chip0420_438044 8.52 9.1 Chip1 T1D_1 T1D _ 6746 4336 EBV-BLMF1 EBV 0.82 2531 EBV-BLMF1 157 4179 8 EBV BLMF1 GLCTLVAML effector memory T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*02:01 B2M MHCI -2204 chip0420_667881 9.05 9.79 Chip1 T1D_2 T1D TGTGCCAGCAACTTAGCGGGGAACAATGAGCAGTTCTTC CASNLAGNNEQFF TRBV9*01 TRBJ2-1*01 7.0 435.0 _CASNLAGNNEQFF 15 4777 EBV-BLMF1 EBV 1.0 2531 NEG 155 4622 8 EBV BLMF1 GLCTLVAML effector memory T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*02:01 B2M MHCI -2205 chip0420_709919 8.44 11.35 Chip1 T1D_2 T1D TGTGTGGTGAACCTACCTAACGACTACAAGCTCAGCTTT CVVNLPNDYKLSF TRAV12-1*01 TRAJ20*01 63.0 4613.0 TGTGCCAGCAGTTTAGCGCAGGTAGCGGGAGGGAATGAGCAGTTCTTC CASSLAQVAGGNEQFF TRBV12-3*01,TRBV12-4*01 TRBJ2-1*01 1.0 19.0 CVVNLPNDYKLSF_CASSLAQVAGGNEQFF 1 3419 EBV-BLMF1 EBV 0.73 2531 NEG 168 3251 7 EBV BLMF1 GLCTLVAML transitional T cells between effector and memory populations PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*02:01 B2M MHCI -2206 chip0420_708503 -2.8 8.56 Chip1 T1D_2 T1D TGCGCCAGCATACTAGCGGGAGAACCAGATACGCAGTATTTT CASILAGEPDTQYF TRBV10-2*01 TRBJ2-3*01 18.0 676.0 _CASILAGEPDTQYF 1 5879 M1 FLU 0.9 1250 NEG 163 5716 2 InfluenzaA M1 GILGFVFTL Naive T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*02:01 B2M MHCI -2207 chip0420_654327 6.92 13.34 Chip1 T1D_2 T1D TGTACCAGTTCGACAGGGGCCTCTGGCTACACCTTC CTSSTGASGYTF TRBV19*01 TRBJ1-2*01 13.0 971.0 _CTSSTGASGYTF 1 3005 M1 FLU 0.68 1250 M1 141 2864 7 InfluenzaA M1 GILGFVFTL transitional T cells between effector and memory populations PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*02:01 B2M MHCI -2208 chip0420_452897 13.99 8.1 Chip1 T1D_1 T1D TGTGCCAGCAGCCCAGTTAGCGGGTCAACCTACGAGCAGTACTTC CASSPVSGSTYEQYF TRBV3-1*01 TRBJ2-7*01 27.0 1424.0 _CASSPVSGSTYEQYF 80 2441 EBV-BLMF1 EBV 1.0 2531 EBV-BLMF1 151 2290 10 EBV BLMF1 GLCTLVAML effector memory T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*02:01 B2M MHCI -2209 chip0420_261033 12.47 7.51 Chip1 T1D_1 T1D _ 6746 3351 HCVNS4B-1807-1816 HCV 0.87 74 HCVNS4B-1807-1816 147 3204 10 HCV NS4B LLFNILGGWV effector memory T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*02:01 B2M MHCI -2210 chip0420_252637 5.12 11.5 Chip1 T1D_2 T1D TGTGCTGGGCGGGTTGATGGTGGTGCTACAAACAAGCTCATCTTT CAGRVDGGATNKLIF TRAV35*01 TRAJ32*01 20.0 1141.0 CAGRVDGGATNKLIF_ 1 4559 PGT-178 PGT 1.0 1480 PGT-178 130 4429 6 HomoSapiens PGT LLAGIGTVPI central memory T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*02:01 B2M MHCI -2211 chip0420_633905 10.36 10.91 Chip1 T1D_2 T1D _ 6746 2945 EBV-BRLF1 EBV 0.9 1264 EBV-BRLF1 168 2777 9 EBV BRLF1 YVLDHLIVV effector memory T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*02:01 B2M MHCI -2212 chip0420_319580 13.92 10.07 Chip1 T1D_1 T1D TGTGCTGTGAGTGATTTGGGAATGACATGCGCTTT CAVSDtt?GNDMRF TRAV8-4*01 TRAJ43*01 2.0 131.0 TGCAGCGTCGGCTCCAGGGGAACTAATGAAAAACTGTTTTTT CSVGSRGTNEKLFF TRBV29-1*01 TRBJ1-4*01 75.0 4092.0 CAVSDtt?GNDMRF_CSVGSRGTNEKLFF 6 2969 EBV-BLMF1 EBV 0.55 2531 NEG 163 2806 12 EBV BLMF1 GLCTLVAML effector T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*02:01 B2M MHCI -2213 chip0420_679868 -1.52 6.84 Chip1 healthy_2 healthy _ 6746 7253 PGT-178 PGT 0.68 1480 PGT-178 132 7121 3 HomoSapiens PGT LLAGIGTVPI Naive T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*02:01 B2M MHCI -2214 chip0420_93264 13.34 11.45 Chip1 T1D_1 T1D TGTGCCGTGGACCCATGGGGTAACCAGTTCTATTTC CAVDPWGNQFYF TRAV39*01 TRAJ49*01 26.0 2613.0 TGTGCCACCCAACAGGGGAGGGACAGTCAGCCCCAGCATTTT CATQQGRDSQPQHF TRBV28*01 TRBJ1-5*01 39.0 1714.0 CAVDPWGNQFYF_CATQQGRDSQPQHF 16 2258 EBV-BLMF1 EBV 0.64 2531 NEG 136 2122 9 EBV BLMF1 GLCTLVAML effector memory T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*02:01 B2M MHCI -2215 chip0420_367481 13.49 13.08 Chip1 T1D_1 T1D TGTGCCAGCAGCACGGGACAGCTATCGAACACCGGGGAGCTGTTTTTT CASSTGQLSNTGELFF TRBV9*01 TRBJ2-2*01 15.0 747.0 _CASSTGQLSNTGELFF 82 1351 EBV-BLMF1 EBV 0.62 2531 NEG 164 1187 12 EBV BLMF1 GLCTLVAML effector T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*02:01 B2M MHCI -2216 chip0420_590918 9.81 9.16 Chip1 T1D_2 T1D TGTGCCGTGAAGGACACCGACAAGCTCATCTTT CAVKDTDKLIF TRAV8-1*01 TRAJ34*01 19.0 1910.0 TGTGCCTGGAGTGTACAGCTAGCGGGAGTAGACGAGCAGTACTTC CAWSVQLAGVDEQYF TRBV30*01 TRBJ2-7*01 31.0 1173.0 CAVKDTDKLIF_CAWSVQLAGVDEQYF 9 4659 EBV-BRLF1 EBV 0.73 1264 NEG 154 4505 8 EBV BRLF1 YVLDHLIVV effector memory T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*02:01 B2M MHCI -2217 chip0420_475266 12.99 7.02 Chip1 T1D_1 T1D TGCAGCGTCGGCTCCAGGGGAACTAATGGAAAACTGTTTTTT CSVGSRGTNGKLFF TRBV29-1*01 TRBJ1-4*01 3.0 62.0 _CSVGSRGTNGKLFF 1 2596 EBV-BLMF1 EBV 0.44 2531 NEG 165 2431 10 EBV BLMF1 GLCTLVAML effector memory T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*02:01 B2M MHCI -2218 chip0420_55165 9.84 8.84 Chip1 T1D_1 T1D TGTGCCAGCAGCACGGGACAGCTATCGAACACCGGGGAGCTGTTTTTT CASSTGQLSNTGELFF TRBV9*01 TRBJ2-2*01 4.0 264.0 _CASSTGQLSNTGELFF 82 5373 EBV-BLMF1 EBV 0.78 2531 NEG 165 5208 8 EBV BLMF1 GLCTLVAML effector memory T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*02:01 B2M MHCI -2219 chip0420_37109 6.03 12.74 Chip1 T1D_1 T1D TGTGCTGTGAGTGATCGGGATGGAGGCTTCAAAACTATCTTT CAVSDRDGGFKTIF TRAV8-4*01 TRAJ9*01 5.0 436.0 CAVSDRDGGFKTIF_ 6 6206 M1 FLU 0.72 1250 M1 139 6067 7 InfluenzaA M1 GILGFVFTL transitional T cells between effector and memory populations PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*02:01 B2M MHCI -2220 chip0420_560914 8.54 10.19 Chip1 T1D_2 T1D TGTGCCAGCAGCTTAAACGCGGGAGAGTGGTATGGCTACACCTTC CASSLNAGEWYGYTF TRBV11-2*01 TRBJ1-2*01 12.0 670.0 _CASSLNAGEWYGYTF 3 4970 EBV-BLMF1 EBV 0.5 2531 NEG 168 4802 8 EBV BLMF1 GLCTLVAML effector memory T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*02:01 B2M MHCI -2221 chip0420_373424 12.04 6.75 Chip1 T1D_2 T1D TGTGTGGTGAACGGCAGGGATAGCAGCTATAAATTGATCTTC CVVNGRDSSYKLIF TRAV12-1*01 TRAJ12*01 97.0 4366.0 TGTGCCAGCAGCTCGGGACTAGTCGCCCCCGGGGAGCTGTTTTTT CASSSGLVAPGELFF TRBV2*01 TRBJ2-2*01 22.0 1628.0 CVVNGRDSSYKLIF_CASSSGLVAPGELFF 98 4419 EBV-BLMF1 EBV 0.8 2531 NEG 164 4255 10 EBV BLMF1 GLCTLVAML effector memory T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*02:01 B2M MHCI -2222 chip0420_306563 0.56 4.06 Chip1 T1D_1 T1D TGTGCCGAGCCTTATGGAGGAAGCCAAGGAAATCTCATCTTT CAEPYGGSQGNLIF TRAV12-2*01 TRAJ42*01 26.0 1445.0 TGTGCTGTGCAGGCGTATGGGCGGGCCATTACCCTTT CAVQAY??gGGPLPF TRAV20*01 TRAJ48*01 31.0 2040.0 0.44 TGTGCCAGCAGCCCCGGGGGGGCAGGAAACACCATATATTTT CASSPGGAGNTIYF TRBV27*01 TRBJ1-3*01 6.0 447.0 CAEPYGGSQGNLIF_CASSPGGAGNTIYF 1 9250 HCV-L2I HCV 0.5 9 NEG 144 9106 5 HCV POL KIVALGINAV natural killer-like T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*02:01 B2M MHCI -2223 chip0420_812786 9.8 8.69 Chip1 T1D_1 T1D TGCAGCGTCGGCTCCAGGGGAACTAATGAAAAACTGTTTTTT CSVGSRGTNEKLFF TRBV29-1*01 TRBJ1-4*01 95.0 4860.0 _CSVGSRGTNEKLFF 283 3035 EBV-BLMF1 EBV 0.7 2531 NEG 137 2898 8 EBV BLMF1 GLCTLVAML effector memory T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*02:01 B2M MHCI -2224 chip0420_699238 9.06 11.11 Chip1 T1D_2 T1D TGCGCCAGCAGGATGGGGGCCGGGGATACGCAGTATTTT CASRMGAGDTQYF TRBV10-2*01 TRBJ2-3*01 41.0 2381.0 _CASRMGAGDTQYF 90 4827 EBV-BLMF1 EBV 0.55 2531 NEG 152 4675 9 EBV BLMF1 GLCTLVAML effector memory T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*02:01 B2M MHCI -2225 chip0420_269583 8.71 11.88 Chip1 T1D_2 T1D TGCAGCGTGGGGACAGGGGGAACTAATGAAAAACTGTTTTTT CSVGTGGTNEKLFF TRBV29-1*01 TRBJ1-4*01 36.0 2126.0 _CSVGTGGTNEKLFF 638 3048 EBV-BLMF1 EBV 0.6 2531 NEG 150 2898 7 EBV BLMF1 GLCTLVAML transitional T cells between effector and memory populations PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*02:01 B2M MHCI -2226 chip0420_864573 11.0 11.97 Chip1 T1D_2 T1D _ 6746 2418 EBV-BRLF1 EBV 0.92 1264 NEG 167 2251 9 EBV BRLF1 YVLDHLIVV effector memory T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*02:01 B2M MHCI -2227 chip0420_183155 6.24 14.11 Chip1 T1D_2 T1D TGCAGCGTGGGGACAGGGGGAACTAATGAAAAACTGTTTTTT CSVGTGGTNEKLFF TRBV29-1*01 TRBJ1-4*01 156.0 7065.0 _CSVGTGGTNEKLFF 638 3453 EBV-BLMF1 EBV 0.75 2531 NEG 145 3308 7 EBV BLMF1 GLCTLVAML transitional T cells between effector and memory populations PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*02:01 B2M MHCI -2228 chip0420_116277 11.05 7.77 Chip1 T1D_2 T1D _ 6746 3038 EBV-BRLF1 EBV 1.0 1264 EBV-BRLF1 157 2881 10 EBV BRLF1 YVLDHLIVV effector memory T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*02:01 B2M MHCI -2229 chip0420_668255 -3.25 10.12 Chip1 T1D_1 T1D TGTGCAATAGCTAGGTCTAACTTTGGAAATGAGAAATTAACCTTT CAIARSNFGNEKLTF TRAV12-3*01 TRAJ48*01 54.0 2282.0 TGTGCCAGCAGTGAAGGAGGTTCCGAGCAGTTCTTC CASSEGGSEQFF TRBV6-4*01 TRBJ2-1*01 10.0 856.0 CAIARSNFGNEKLTF_CASSEGGSEQFF 1 4459 PGT-178 PGT 0.82 1480 PGT-178 156 4303 2 HomoSapiens PGT LLAGIGTVPI Naive T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*02:01 B2M MHCI -2230 chip0420_499334 -1.1 9.21 Chip1 T1D_1 T1D _ 6746 5404 PGT-178 PGT 0.61 1480 PGT-178 137 5267 3 HomoSapiens PGT LLAGIGTVPI Naive T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*02:01 B2M MHCI -2231 chip0420_304090 6.97 10.75 Chip1 T1D_1 T1D _ 6746 5653 M1 FLU 1.0 1250 M1 140 5513 7 InfluenzaA M1 GILGFVFTL transitional T cells between effector and memory populations PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*02:01 B2M MHCI -2232 chip0420_23207 9.09 11.28 Chip1 T1D_2 T1D TGTGCAGCATACGCAGGCAACATGCTCGCCTTT CAAYAGNMLAF TRAV29/DV5*01 TRAJ39*01 27.0 2803.0 TGCGCCAGCAGGATGGGGGCCGGGGATACGCAGTATTTT CASRMGAGDTQYF TRBV10-2*01 TRBJ2-3*01 23.0 1621.0 CAAYAGNMLAF_CASRMGAGDTQYF 3 4469 EBV-BLMF1 EBV 0.67 2531 NEG 150 4319 9 EBV BLMF1 GLCTLVAML effector memory T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*02:01 B2M MHCI -2233 chip0420_814687 -2.41 9.32 Chip1 T1D_1 T1D TGTGCAATGAGCGCGTCTAACTTTGGAAATGAGAAATTAACCTTT CAMSASNFGNEKLTF TRAV12-3*01 TRAJ48*01 48.0 2089.0 CAMSASNFGNEKLTF_ 3 5620 PGT-178 PGT 0.68 1480 PGT-178 131 5489 2 HomoSapiens PGT LLAGIGTVPI Naive T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*02:01 B2M MHCI -2234 chip0420_28808 9.67 10.06 Chip1 T1D_1 T1D TGTGCCAGCAGCCCAGTTAGCGGGTCAACCTACGAGCAGTACTTC CASSPVSGSTYEQYF TRBV3-1*01 TRBJ2-7*01 31.0 1809.0 _CASSPVSGSTYEQYF 80 4458 EBV-BLMF1 EBV 0.95 2531 EBV-BLMF1 152 4306 9 EBV BLMF1 GLCTLVAML effector memory T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*02:01 B2M MHCI -2235 chip0420_782846 10.98 11.98 Chip1 T1D_1 T1D TGTGCCACCAGTGATTGGCTGACTAACGAGCAGTACTTC CATSDWLTNEQYF TRBV24-1*01 TRBJ2-7*01 13.0 845.0 _CATSDWLTNEQYF 2 3282 EBV-BRLF1 EBV 0.92 1264 EBV-BRLF1 155 3127 9 EBV BRLF1 YVLDHLIVV effector memory T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*02:01 B2M MHCI -2236 chip0420_707845 -2.16 9.25 Chip1 T1D_1 T1D TGTGCCAGCAGCGTAGAGGGGGTCTGGGTAGAGACCCAGTACTTC CASSVEGVWVETQYF TRBV9*01 TRBJ2-5*01 29.0 1776.0 _CASSVEGVWVETQYF 1 6565 IGRP-152-160-WLI IGRP 0.97 27 IGRP-152-160-WLI 141 6424 3 HomoSapiens IGRP FLWSVFWLI Naive T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*02:01 B2M MHCI -2237 chip0420_211016 12.99 6.66 Chip1 T1D_1 T1D TGTGTGGTGAACGGGGGGGATAGCAGCTATAAATTGATCTTC CVVNGGDSSYKLIF TRAV12-1*01 TRAJ12*01 57.0 2707.0 TGTGCCAGCAGTTCGGGACAGGTACTTCCCAATGAGCAGTTCTTC CASSSGQVLPNEQFF TRBV2*01 TRBJ2-1*01 47.0 2299.0 CVVNGGDSSYKLIF_CASSSGQVLPNEQFF 31 3795 EBV-BLMF1 EBV 0.41 2531 NEG 183 3612 10 EBV BLMF1 GLCTLVAML effector memory T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*02:01 B2M MHCI -2238 chip0420_549976 -2.98 9.47 Chip1 T1D_2 T1D TGTGCTGTCAGCGAGGCCCTTTAAGACACCCGTGGCTCTAGGTTGACCTTT CAVSEAL*DTRGSRLTF TRAV41*01 TRAJ10*01 25.0 1335.0 TGTGCCAGTTCGACTAGCGGCATATACAATGAGCAGTTCTTC CASSTSGIYNEQFF TRBV27*01 TRBJ2-1*01 5.0 149.0 CAVSEAL*DTRGSRLTF_CASSTSGIYNEQFF 1 4570 CVB3-P3A CVB 0.43 77 NEG 154 4416 2 CoxsackievirusB P3A GIIYIIYKL Naive T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*02:01 B2M MHCI -2239 chip0420_60664 -1.66 8.14 Chip1 T1D_1 T1D _ 6746 6247 PGT-178 PGT 0.62 1480 PGT-178 140 6107 3 HomoSapiens PGT LLAGIGTVPI Naive T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*02:01 B2M MHCI -2240 chip0420_4802 11.63 7.35 Chip1 T1D_2 T1D TGTGCCGTGAAGGACACCGACAAGCTCATCTTT CAVKDTDKLIF TRAV8-1*01 TRAJ34*01 27.0 2183.0 TGTGCCTGGAGTGTACAGCTAGCGGGAGTAGACGAGCAGTACTTC CAWSVQLAGVDEQYF TRBV30*01 TRBJ2-7*01 154.0 7265.0 CAVKDTDKLIF_CAWSVQLAGVDEQYF 9 4289 EBV-BRLF1 EBV 0.89 1264 EBV-BRLF1 165 4124 10 EBV BRLF1 YVLDHLIVV effector memory T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*02:01 B2M MHCI -2241 chip0420_874123 5.62 13.28 Chip1 T1D_1 T1D TGCGCTTTCATGACACATGCCGGGGGTGCTTGCTGTGGCCCGCTGACCTTT CAFMTHAGGACCGPLTF TRAV38-1*01 TRAJ52*01 13.0 583.0 CAFMTHAGGACCGPLTF_ 1 4836 M1 FLU 0.47 1250 NEG 127 4709 7 InfluenzaA M1 GILGFVFTL transitional T cells between effector and memory populations PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*02:01 B2M MHCI -2242 chip0420_651173 9.44 10.94 Chip1 T1D_2 T1D TGCAGCGTGGGGACAGGGGGAACTAATGAAAAACTGTTTTTT CSVGTGGTNEKLFF TRBV29-1*01 TRBJ1-4*01 26.0 1083.0 _CSVGTGGTNEKLFF 638 4301 EBV-BLMF1 EBV 0.7 2531 NEG 165 4136 9 EBV BLMF1 GLCTLVAML effector memory T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*02:01 B2M MHCI -2243 chip0420_8479 9.72 11.12 Chip1 T1D_2 T1D TGCAGCGTGGGGACAGGGGGAACTAATGAAAAACTGTTTTTT CSVGTGGTNEKLFF TRBV29-1*01 TRBJ1-4*01 75.0 3725.0 _CSVGTGGTNEKLFF 638 4103 EBV-BLMF1 EBV 0.83 2531 NEG 153 3950 9 EBV BLMF1 GLCTLVAML effector memory T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*02:01 B2M MHCI -2244 chip0420_308919 12.4 10.14 Chip1 T1D_1 T1D TGCAGCGTCGGCTCCAGAGGAACTAATGAAAAACTGTTTTTT CSVGSRGTNEKLFF TRBV29-1*01 TRBJ1-4*01 19.0 1664.0 _CSVGSRGTNEKLFF 283 2694 EBV-BLMF1 EBV 0.91 2531 NEG 143 2551 9 EBV BLMF1 GLCTLVAML effector memory T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*02:01 B2M MHCI -2245 chip0420_715371 6.08 13.62 Chip1 T1D_1 T1D TGTGCTGTGCCCCTGGGGGGTTTTGTGGTGGCTCCGCCCAGCTGGTTTTC CAVPLGGFg?tGGSAQLVF TRAV20*01 TRAJ4*01 18.0 794.0 CAVPLGGFg?tGGSAQLVF_ 1 3893 M1 FLU 0.55 1250 NEG 170 3723 7 InfluenzaA M1 GILGFVFTL transitional T cells between effector and memory populations PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*02:01 B2M MHCI -2246 chip0420_814875 7.72 13.7 Chip1 T1D_1 T1D TGTGCCAGTAGTGTCAGGGCAGGAGAGACCCAGTACTTC CASSVRAGETQYF TRBV19*01 TRBJ2-5*01 64.0 4179.0 _CASSVRAGETQYF 23 2884 M1 FLU 0.95 1250 M1 150 2734 7 InfluenzaA M1 GILGFVFTL transitional T cells between effector and memory populations PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*02:01 B2M MHCI -2247 chip0420_737795 -1.56 6.85 Chip1 T1D_1 T1D TGTGCCGTGCCTCCTAATGCTGGTGGTACTAGCTATGGAAAGCTGACATTT CAVPPNAGGTSYGKLTF TRAV12-2*01 TRAJ52*01 11.0 562.0 TGCAGCGTGGGGACAGGGGGAACTAATGAAAAACTGTTTTTT CSVGTGGTNEKLFF TRBV29-1*01 TRBJ1-4*01 1.0 27.0 CAVPPNAGGTSYGKLTF_CSVGTGGTNEKLFF 1 8018 MART1-ALA MART1 0.8 269 MART1-ALA 142 7876 3 HomoSapiens MART1 ALAGIGILTV Naive T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*02:01 B2M MHCI -2248 chip0420_630762 -2.65 7.67 Chip1 T1D_1 T1D TGCAGTGCCAAGGGTTGGACAGGGGTCAATGAGCAGTTCTTC CSAKGWTGVNEQFF TRBV20-1*01 TRBJ2-1*01 28.0 1906.0 _CSAKGWTGVNEQFF 1 6913 PGT-178 PGT 0.67 1480 PGT-178 131 6782 2 HomoSapiens PGT LLAGIGTVPI Naive T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*02:01 B2M MHCI -2249 chip0420_563332 12.46 8.65 Chip1 T1D_2 T1D TGCAGCGTTGACCAAAGGACAGGGCAAAAGAAGAACTATGGCTACACCTTC CSVDQRTGQKKNYGYTF TRBV29-1*01 TRBJ1-2*01 82.0 4151.0 _CSVDQRTGQKKNYGYTF 40 2251 EBV-BLMF1 EBV 1.0 2531 NEG 168 2083 10 EBV BLMF1 GLCTLVAML effector memory T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*02:01 B2M MHCI -2250 chip0420_194863 9.26 8.42 Chip1 T1D_1 T1D TGCATCCTGAGACGCTATGGCGGAAGCCAAGGAAATCTCATCTTT CILRRYGGSQGNLIF TRAV26-2*01 TRAJ42*01 53.0 1991.0 CILRRYGGSQGNLIF_ 9 6440 EBV-BLMF1 EBV 0.95 2531 EBV-BLMF1 142 6298 8 EBV BLMF1 GLCTLVAML effector memory T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*02:01 B2M MHCI -2251 chip0420_165071 5.9 13.49 Chip1 T1D_1 T1D TGTGCTGTGCCCCTGGGGTGTTTTCTGGTGGCTACAATAAGCTGATTTTT CAVPLGCFc?tGGYNKLIF TRAV20*01 TRAJ4*01 45.0 1997.0 TGTGCCAGTAGTATAAATGGGGGCCGGAGGGATGGCTACACCTTC CASSINGGRRDGYTF TRBV19*01 TRBJ1-2*01 9.0 381.0 CAVPLGCFc?tGGYNKLIF_CASSINGGRRDGYTF 1 4498 M1 FLU 0.8 1250 M1 156 4342 7 InfluenzaA M1 GILGFVFTL transitional T cells between effector and memory populations PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*02:01 B2M MHCI -2252 chip0420_133325 13.12 8.26 Chip1 T1D_2 T1D TGCGCCAGCAGGATGGGGGCCGGGGATACGCAGTATTTT CASRMGAGDTQYF TRBV10-2*01 TRBJ2-3*01 17.0 1145.0 _CASRMGAGDTQYF 90 2201 EBV-BLMF1 EBV 0.5 2531 NEG 159 2042 10 EBV BLMF1 GLCTLVAML effector memory T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*02:01 B2M MHCI -2253 chip0420_557530 5.8 9.94 Chip1 T1D_1 T1D _ 6746 3993 EBV-LMP2-FLY EBV 0.9 355 EBV-LMP2-FLY 151 3842 6 EBV LMP2 FLYALALLL central memory T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*02:01 B2M MHCI -2254 chip0420_98126 13.72 13.55 Chip1 T1D_2 T1D TGCAGCGTGGGGACAGGGGGAACTAATGAAAAACTGTTTTTT CSVGTGGTNEKLFF TRBV29-1*01 TRBJ1-4*01 80.0 3476.0 _CSVGTGGTNEKLFF 638 1905 EBV-BLMF1 EBV 0.5 2531 NEG 148 1757 11 EBV BLMF1 GLCTLVAML effector T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*02:01 B2M MHCI -2255 chip0420_63126 9.84 8.64 Chip1 T1D_1 T1D TGTGCCAGCAGCCAAGAACCGACTAGCGGCGATACGCAGTATTTT CASSQEPTSGDTQYF TRBV3-1*01 TRBJ2-3*01 40.0 1984.0 _CASSQEPTSGDTQYF 1 4303 EBV-BRLF1 EBV 0.78 1264 EBV-BRLF1 146 4157 8 EBV BRLF1 YVLDHLIVV effector memory T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*02:01 B2M MHCI -2256 chip0420_683019 11.76 12.17 Chip1 T1D_1 T1D TGTGCCAGCAGCCCGACTAGCGGGAGTATTTATGAGCAGTTCTTC CASSPTSGSIYEQFF TRBV3-1*01 TRBJ2-1*01 38.0 1702.0 _CASSPTSGSIYEQFF 2 2272 EBV-BLMF1 EBV 0.92 2531 EBV-BLMF1 165 2107 11 EBV BLMF1 GLCTLVAML effector T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*02:01 B2M MHCI -2257 chip0420_202853 -3.38 13.41 Chip1 T1D_1 T1D TGCGCCAGCAGCCCTTGGGGGGCCGGGGAGCTGTTTTTT CASSPWGAGELFF TRBV4-1*01 TRBJ2-2*01 43.0 3771.0 _CASSPWGAGELFF 1 4029 PGT-178 PGT 0.54 1480 PGT-178 139 3890 1 HomoSapiens PGT LLAGIGTVPI Naive T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*02:01 B2M MHCI -2258 chip0420_747801 5.39 9.03 Chip1 T1D_1 T1D TGTGCTACGGGAGGGGGTTCAGGATACAGCACCCTCACCTTT CATGGGSGYSTLTF TRAV17*01 TRAJ11*01 19.0 678.0 CATGGGSGYSTLTF_ 1 2879 EBV-LMP2-FLY EBV 0.94 355 EBV-LMP2-FLY 129 2750 6 EBV LMP2 FLYALALLL central memory T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*02:01 B2M MHCI -2259 chip0420_336733 -2.9 7.67 Chip1 T1D_1 T1D _ 6746 6565 ROTA-VP3 ROTA 0.59 41 NEG 138 6427 2 RotavirusA VP3 YLLPGWKL Naive T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*02:01 B2M MHCI -2260 chip0420_290141 8.98 10.41 Chip1 T1D_2 T1D _ 6746 4560 EBV-BLMF1 EBV 0.89 2531 NEG 165 4395 8 EBV BLMF1 GLCTLVAML effector memory T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*02:01 B2M MHCI -2261 chip0420_245011 13.76 9.18 Chip1 T1D_1 T1D TGTGCCAGCAGCACGGGACAGCTATCGAACACCGGGGAGCTGTTTTTT CASSTGQLSNTGELFF TRBV9*01 TRBJ2-2*01 67.0 2865.0 _CASSTGQLSNTGELFF 82 3982 EBV-BLMF1 EBV 0.67 2531 NEG 159 3823 12 EBV BLMF1 GLCTLVAML effector T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*02:01 B2M MHCI -2262 chip0420_171533 9.11 9.37 Chip1 T1D_1 T1D TGTGCCAGCAGCACGGGACAGCTATCGAACACCGGGGAGCTGTTTTTT CASSTGQLSNTGELFF TRBV9*01 TRBJ2-2*01 8.0 301.0 _CASSTGQLSNTGELFF 82 3321 EBV-BLMF1 EBV 0.45 2531 NEG 156 3165 8 EBV BLMF1 GLCTLVAML effector memory T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*02:01 B2M MHCI -2263 chip0420_445974 -4.39 10.54 Chip1 T1D_1 T1D TGCGCCAGCAGGGGGACTAGCCTCAATGAGCAGTTCTTC CASRGTSLNEQFF TRBV10-2*01 TRBJ2-1*01 42.0 2642.0 _CASRGTSLNEQFF 1 4050 M1 FLU 0.92 1250 M1 142 3908 2 InfluenzaA M1 GILGFVFTL Naive T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*02:01 B2M MHCI -2264 chip0420_490134 -3.37 7.88 Chip1 T1D_1 T1D TGTGCCAGCAGCTTTAGTCACGAGCAGTACTTC CASSFSHEQYF TRBV11-3*01 TRBJ2-7*01 5.0 371.0 _CASSFSHEQYF 1 6270 HCV-K1S HCV 0.42 10 NEG 125 6145 2 HCV POL SLVALGINAV Naive T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*02:01 B2M MHCI -2265 chip0420_80930 12.34 7.34 Chip1 T1D_1 T1D TGTGCCAGCAGTTCCGGAGGGAACGTGGATACGCAGTATTTT CASSSGGNVDTQYF TRBV7-3*01 TRBJ2-3*01 32.0 1687.0 _CASSSGGNVDTQYF 47 3159 EBV-BLMF1 EBV 0.67 2531 NEG 142 3017 10 EBV BLMF1 GLCTLVAML effector memory T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*02:01 B2M MHCI -2266 chip0420_306669 8.05 8.57 Chip1 T1D_1 T1D _ 6746 11027 EBV-BLMF1 EBV 0.47 2531 NEG 134 10893 8 EBV BLMF1 GLCTLVAML effector memory T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*02:01 B2M MHCI -2267 chip0420_11517 -1.16 11.0 Chip1 T1D_1 T1D TGTGCCCGCACCACCCTGCCGGACAGGGGCTCCTACGAGCAGTACTTC CARTTLPDRGSYEQYF TRBV5-6*01 TRBJ2-7*01 3.0 180.0 _CARTTLPDRGSYEQYF 1 4970 PGT-178 PGT 0.47 1480 PGT-178 152 4818 3 HomoSapiens PGT LLAGIGTVPI Naive T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*02:01 B2M MHCI -2268 chip0420_99359 5.44 8.78 Chip1 T1D_2 T1D TGTGCCCGCTCGCTTCAGGGGGGTTCCTTCTATGGCTACACCTTC CARSLQGGSFYGYTF TRBV6-1*01 TRBJ1-2*01 3.0 116.0 _CARSLQGGSFYGYTF 1 3770 EBV-LMP2-FLY EBV 0.86 355 NEG 133 3637 6 EBV LMP2 FLYALALLL central memory T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*02:01 B2M MHCI -2269 chip0420_681635 9.74 10.61 Chip1 T1D_2 T1D TGCAGCGTGGGGACAGGGGGAACTAATGAAAAACTGTTTTTT CSVGTGGTNEKLFF TRBV29-1*01 TRBJ1-4*01 113.0 5851.0 _CSVGTGGTNEKLFF 638 4020 EBV-BLMF1 EBV 0.67 2531 NEG 147 3873 9 EBV BLMF1 GLCTLVAML effector memory T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*02:01 B2M MHCI -2270 chip0420_253787 14.43 7.66 Chip1 T1D_1 T1D TGTGCCGTGGACCCATGGGGTAACCCCTTCTATTTT CAVDPWGNPFYF TRAV39*01 TRAJ49*01 42.0 2068.0 TGTGCCACCCAACAGGGGAGGGACAGTCAGCCCCAGCATTTT CATQQGRDSQPQHF TRBV28*01 TRBJ1-5*01 246.0 6044.0 CAVDPWGNPFYF_CATQQGRDSQPQHF 1 5056 EBV-BLMF1 EBV 0.62 2531 NEG 146 4910 10 EBV BLMF1 GLCTLVAML effector memory T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*02:01 B2M MHCI -2271 chip0420_448040 6.04 10.49 Chip1 T1D_2 T1D TGTGCCAGCAGCCAAGAGGGGGGAGGAGCATACGAGCAGTACTTC CASSQEGGGAYEQYF TRBV4-2*01 TRBJ2-7*01 24.0 948.0 _CASSQEGGGAYEQYF 1 6313 EBV-LMP1-2 EBV 0.53 41 NEG 145 6168 6 EBV LMP1 YLQQNWWTL central memory T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*02:01 B2M MHCI -2272 chip0420_390627 11.14 10.81 Chip1 T1D_1 T1D TGTGCCACCCAACAGGGGAGGGACAGTCAGCCCCAGCATTTT CATQQGRDSQPQHF TRBV28*01 TRBJ1-5*01 23.0 954.0 _CATQQGRDSQPQHF 52 3997 EBV-BLMF1 EBV 1.0 2531 NEG 148 3849 9 EBV BLMF1 GLCTLVAML effector memory T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*02:01 B2M MHCI -2273 chip0420_35479 8.44 8.92 Chip1 T1D_2 T1D TGTGCAGCATACGCAGGCAACATGCTCACCTTT CAAYAGNMLTF TRAV29/DV5*01 TRAJ39*01 3.0 418.0 TGCGCCAGCAGGATGGGGGCCGGGGATACGCAGTATTTT CASRMGAGDTQYF TRBV10-2*01 TRBJ2-3*01 58.0 3551.0 CAAYAGNMLTF_CASRMGAGDTQYF 21 5299 EBV-BLMF1 EBV 0.6 2531 NEG 157 5142 8 EBV BLMF1 GLCTLVAML effector memory T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*02:01 B2M MHCI -2274 chip0420_662496 5.86 13.37 Chip1 T1D_1 T1D TGTGCCGTGTCTTCTGGTGGCTACAATAAGCTGATTTTT CAVSSGGYNKLIF TRAV12-2*01 TRAJ4*01 1.0 59.0 CAVSSGGYNKLIF_ 1 4174 M1 FLU 0.65 1250 M1 155 4019 7 InfluenzaA M1 GILGFVFTL transitional T cells between effector and memory populations PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*02:01 B2M MHCI -2275 chip0420_472517 6.71 12.75 Chip1 T1D_1 T1D _ 6746 3928 MART1-A28L MART1 0.59 84 MART1-A28L 133 3795 7 HomoSapiens MART1 ALGIGILTV transitional T cells between effector and memory populations PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*02:01 B2M MHCI -2276 chip0420_859360 14.54 11.79 Chip1 T1D_1 T1D TGTGCCACCCAACAGGGGAGGGACAGTCAGCCCCAGCATTTT CATQQGRDSQPQHF TRBV28*01 TRBJ1-5*01 6.0 115.0 _CATQQGRDSQPQHF 52 2514 EBV-BLMF1 EBV 0.62 2531 NEG 139 2375 12 EBV BLMF1 GLCTLVAML effector T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*02:01 B2M MHCI -2277 chip0420_585854 -2.03 7.56 Chip1 T1D_1 T1D TGTGTGGTGAATGGACCTGCAGGCAACCAGCTAACTTTT CVVNGPAGNQLTF TRAV12-1*01 TRAJ17*01 24.0 1779.0 TGTACCAGCAGCCTGTCGACTGGGCCCCTCTACGAGCAGTACTTC CTSSLSTGPLYEQYF TRBV5-6*01 TRBJ2-7*01 37.0 2048.0 CVVNGPAGNQLTF_CTSSLSTGPLYEQYF 1 4624 PGT-178 PGT 0.53 1480 PGT-178 169 4455 3 HomoSapiens PGT LLAGIGTVPI Naive T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*02:01 B2M MHCI -2278 chip0420_311288 11.87 7.08 Chip1 T1D_2 T1D _ 6746 3537 EBV-BRLF1 EBV 1.0 1264 EBV-BRLF1 185 3352 10 EBV BRLF1 YVLDHLIVV effector memory T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*02:01 B2M MHCI -2279 chip0420_609294 8.92 8.37 Chip1 T1D_1 T1D TGCGCTGACTTAGTTTGCTGGCTTTGCCCGTTCGCTGCTTTGG CADLVCW??cFARSLLW TRAV36/DV7*01 TRAJ38*01 14.0 442.0 CADLVCW??cFARSLLW_ 1 4312 EBV-BLMF1 EBV 0.64 2531 NEG 140 4172 8 EBV BLMF1 GLCTLVAML effector memory T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*02:01 B2M MHCI -2280 chip0420_412327 10.56 9.31 Chip1 T1D_1 T1D TGTGCCAGCAGCACGGGACAGCTATCGAACACCGGGGAGCTGTTTTTT CASSTGQLSNTGELFF TRBV9*01 TRBJ2-2*01 33.0 1236.0 _CASSTGQLSNTGELFF 82 4385 EBV-BLMF1 EBV 0.65 2531 NEG 144 4241 9 EBV BLMF1 GLCTLVAML effector memory T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*02:01 B2M MHCI -2281 chip0420_216815 5.41 9.47 Chip1 T1D_1 T1D TGTGCTACGGAAGGGGATTCAGGATACAGCACCCTCACCTTT CATEGDSGYSTLTF TRAV17*01 TRAJ11*01 54.0 2167.0 CATEGDSGYSTLTF_ 12 4707 EBV-LMP2-FLY EBV 0.89 355 NEG 143 4564 6 EBV LMP2 FLYALALLL central memory T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*02:01 B2M MHCI -2282 chip0420_612642 7.49 13.48 Chip1 T1D_1 T1D TGTGCCAGTAGTATGGGGGCGCATGGCTACACCTTC CASSMGAHGYTF TRBV19*01 TRBJ1-2*01 28.0 1500.0 _CASSMGAHGYTF 6 3416 M1 FLU 0.81 1250 M1 136 3280 7 InfluenzaA M1 GILGFVFTL transitional T cells between effector and memory populations PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*02:01 B2M MHCI -2283 chip0420_773078 10.72 7.63 Chip1 T1D_2 T1D TGTGCCAGCAGTTACATGTCCGGCGAAGCTTTCTTT CASSYMSGEAFF TRBV6-2*01,TRBV6-3*01 TRBJ1-1*01 1.0 51.0 _CASSYMSGEAFF 8 3905 EBV-BRLF1 EBV 0.9 1264 EBV-BRLF1 169 3736 10 EBV BRLF1 YVLDHLIVV effector memory T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*02:01 B2M MHCI -2284 chip0420_660515 7.57 13.81 Chip1 T1D_1 T1D _ 6746 3501 M1 FLU 0.73 1250 NEG 143 3358 7 InfluenzaA M1 GILGFVFTL transitional T cells between effector and memory populations PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*02:01 B2M MHCI -2285 chip0420_302252 11.02 6.94 Chip1 T1D_1 T1D TGTGCCAGCAGCCAAAGCCCGGGTGGTACGCAGTATTTT CASSQSPGGTQYF TRBV14*01 TRBJ2-3*01 11.0 403.0 _CASSQSPGGTQYF 94 3759 EBV-BLMF1 EBV 0.71 2531 NEG 155 3604 10 EBV BLMF1 GLCTLVAML effector memory T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*02:01 B2M MHCI -2286 chip0420_609079 13.23 7.2 Chip1 T1D_1 T1D _ 6746 2203 EBV-BRLF1 EBV 0.71 1264 EBV-BRLF1 159 2044 10 EBV BRLF1 YVLDHLIVV effector memory T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*02:01 B2M MHCI -2287 chip0420_5893 10.41 10.3 Chip1 T1D_1 T1D TGTGCCATCAGTGAGGGGCCGCTGAGCTCCTACAATGAGCAGTTCTTC CAISEGPLSSYNEQFF TRBV10-3*01 TRBJ2-1*01 14.0 708.0 _CAISEGPLSSYNEQFF 1 2707 EBV-BRLF1 EBV 0.79 1264 EBV-BRLF1 172 2535 9 EBV BRLF1 YVLDHLIVV effector memory T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*02:01 B2M MHCI -2288 chip0420_392575 10.59 7.14 Chip1 T1D_1 T1D TGTGCCAGCAGTTCGGGACAGGTACTTCCCAATGAGCAGTTCTTC CASSSGQVLPNEQFF TRBV2*01 TRBJ2-1*01 31.0 1754.0 _CASSSGQVLPNEQFF 61 3343 EBV-BLMF1 EBV 0.41 2531 NEG 154 3189 10 EBV BLMF1 GLCTLVAML effector memory T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*02:01 B2M MHCI -2289 chip0420_216282 9.32 8.17 Chip1 T1D_2 T1D TGTGCAGAGAGTTACGACGGGTATGCACTCAACTTC CAESYDGYALNF TRAV5*01 TRAJ41*01 4.0 366.0 TGTGCCAGCACCCCCGATATTAACACTGAAGCTTTCTTT CASTPDINTEAFF TRBV6-1*01 TRBJ1-1*01 7.0 133.0 CAESYDGYALNF_CASTPDINTEAFF 1 4092 EBV-BLMF1 EBV 0.75 2531 NEG 155 3937 8 EBV BLMF1 GLCTLVAML effector memory T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*02:01 B2M MHCI -2290 chip0420_136984 -3.36 10.83 Chip1 T1D_1 T1D TGTGTGGCCGGCACATAACTACGGTCCGCCTTTTGCCTTT CVAGT*ct??acGPPFAF TRAV12-1*01 TRAJ26*01 25.0 2055.0 TGTGCCAGCAGTCTCCCTGGGCGGAGGGAGGGAAGGGACAATGAGCAGTTCTTC CASSLPGRREGRDNEQFF TRBV12-3*01,TRBV12-4*01 TRBJ2-1*01 2.0 13.0 CVAGT*ct??acGPPFAF_CASSLPGRREGRDNEQFF 1 4230 IGRP-228-236 IGRP 0.77 16 IGRP-228-236 154 4076 4 HomoSapiens IGRP LNIDLLWSV Naive T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*02:01 B2M MHCI -2291 chip0420_60319 -3.75 11.79 Chip1 T1D_1 T1D TGTGCCAGCCGAATTTTGGACAGGGCTAATTTGAACACTGAAGCTTTCTTT CASRILDRANLNTEAFF TRBV19*01 TRBJ1-1*01 38.0 1286.0 _CASRILDRANLNTEAFF 1 4805 M1 FLU 0.51 1250 M1 145 4660 1 InfluenzaA M1 GILGFVFTL Naive T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*02:01 B2M MHCI -2292 chip0420_853712 13.71 10.81 Chip1 T1D_2 T1D _ 6746 2728 EBV-BLMF1 EBV 0.67 2531 NEG 154 2574 9 EBV BLMF1 GLCTLVAML effector memory T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*02:01 B2M MHCI -2293 chip0420_301342 11.73 8.2 Chip1 T1D_1 T1D TGCAGCGTCGGCTCCAGGGGAACTAACGAAAAACTGTTTTTT CSVGSRGTNEKLFF TRBV29-1*01 TRBJ1-4*01 27.0 1754.0 _CSVGSRGTNEKLFF 283 3390 EBV-BLMF1 EBV 0.8 2531 NEG 149 3241 10 EBV BLMF1 GLCTLVAML effector memory T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*02:01 B2M MHCI -2294 chip0420_577227 13.75 9.79 Chip1 T1D_1 T1D TGCGGCCCCGCGGAACCTAACGACTACAAGCTCAGCTTT CGPAEPNDYKLSF TRAV30*01 TRAJ20*01 34.0 2145.0 TGTGCCAGCAGCACGGGACAGCTATCGAACACCGGGGAGCTGTTTTTT CASSTGQLSNTGELFF TRBV9*01 TRBJ2-2*01 41.0 1903.0 CGPAEPNDYKLSF_CASSTGQLSNTGELFF 8 4215 EBV-BLMF1 EBV 0.74 2531 NEG 147 4068 12 EBV BLMF1 GLCTLVAML effector T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*02:01 B2M MHCI -2295 chip0420_320613 15.58 9.46 Chip1 T1D_1 T1D TGCAGCGTCGGCTCCAGGGGAACTAATGAAAAACTGTTTTTT CSVGSRGTNEKLFF TRBV29-1*01 TRBJ1-4*01 62.0 3257.0 _CSVGSRGTNEKLFF 283 2699 EBV-BLMF1 EBV 0.67 2531 NEG 148 2551 12 EBV BLMF1 GLCTLVAML effector T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*02:01 B2M MHCI -2296 chip0420_265993 8.51 9.61 Chip1 T1D_2 T1D _ 6746 5226 EBV-BLMF1 EBV 0.57 2531 NEG 150 5076 8 EBV BLMF1 GLCTLVAML effector memory T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*02:01 B2M MHCI -2297 chip0420_777383 13.52 7.8 Chip1 T1D_2 T1D TGCGCCAGCAGGATGGGGGCCGGGGATACGCAGTATTTT CASRMGAGDTQYF TRBV10-2*01 TRBJ2-3*01 62.0 3636.0 _CASRMGAGDTQYF 90 2458 EBV-BLMF1 EBV 1.0 2531 NEG 166 2292 10 EBV BLMF1 GLCTLVAML effector memory T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*02:01 B2M MHCI -2298 chip0420_31771 6.53 10.23 Chip1 T1D_1 T1D TGTGCTACGGAAGGGGCTTCAGGATACAGCACCCTCACCTTT CATEGASGYSTLTF TRAV17*01 TRAJ11*01 43.0 2371.0 CATEGASGYSTLTF_ 8 7027 EBV-LMP2-FLY EBV 0.88 355 EBV-LMP2-FLY 153 6874 6 EBV LMP2 FLYALALLL central memory T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*02:01 B2M MHCI -2299 chip0420_792972 -1.62 8.07 Chip1 T1D_2 T1D TGTGCTGGCCCCACCCCGAATTATGGAGGAAGCCAAGGAAATCTCATCTTT CAGPTPNYGGSQGNLIF TRAV35*01 TRAJ42*01 20.0 951.0 TGTGCCAGCAGCCCCCGAGCCAACACCGGGGAGCTGTTTTTT CASSPRANTGELFF TRBV13*01 TRBJ2-2*01 61.0 3716.0 CAGPTPNYGGSQGNLIF_CASSPRANTGELFF 1 7330 MART1-ALA MART1 0.46 269 NEG 140 7190 3 HomoSapiens MART1 ALAGIGILTV Naive T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*02:01 B2M MHCI -2300 chip0420_629590 -3.53 9.86 Chip1 T1D_1 T1D TGTGCAACGTCGATATCTAACTTTGGACATGAGAAATTAACCTTT CATSISNFGHEKLTF TRAV12-3*01 TRAJ48*01 48.0 1650.0 TGTGCCAGCAGCCAAGACGGAGTGAAAGGTGTAGGGGAGCAGTACTTC CASSQDGVKGVGEQYF TRBV14*01 TRBJ2-7*01 7.0 276.0 CATSISNFGHEKLTF_CASSQDGVKGVGEQYF 1 4868 PGT-178 PGT 0.59 1480 PGT-178 149 4719 2 HomoSapiens PGT LLAGIGTVPI Naive T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*02:01 B2M MHCI -2301 chip0420_570090 6.08 12.1 Chip1 T1D_1 T1D TGTGCCAGTAGTATAGGGTCCTATGGCTACACCTTC CASSIGSYGYTF TRBV19*01 TRBJ1-2*01 5.0 252.0 _CASSIGSYGYTF 7 5161 M1 FLU 0.81 1250 M1 131 5030 7 InfluenzaA M1 GILGFVFTL transitional T cells between effector and memory populations PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*02:01 B2M MHCI -2302 chip0420_519214 8.6 10.55 Chip1 T1D_2 T1D _ 6746 3726 EBV-BRLF1 EBV 0.9 1264 NEG 147 3579 8 EBV BRLF1 YVLDHLIVV effector memory T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*02:01 B2M MHCI -2303 chip0420_576216 -0.25 8.93 Chip1 T1D_1 T1D _ 6746 5309 PGT-178 PGT 0.62 1480 PGT-178 149 5160 4 HomoSapiens PGT LLAGIGTVPI Naive T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*02:01 B2M MHCI -2304 chip0420_339896 15.34 9.17 Chip1 T1D_2 T1D _ 6746 2120 EBV-BRLF1 EBV 0.97 1264 EBV-BRLF1 138 1982 12 EBV BRLF1 YVLDHLIVV effector T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*02:01 B2M MHCI -2305 chip0420_45119 14.07 9.65 Chip1 T1D_1 T1D _ 6746 3400 EBV-BLMF1 EBV 0.73 2531 NEG 159 3241 12 EBV BLMF1 GLCTLVAML effector T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*02:01 B2M MHCI -2306 chip0420_795805 12.39 7.26 Chip1 T1D_2 T1D TGCAGCGACAGAGACGGAGGAAACTATGGCTACACCTTC CSDRDGGNYGYTF TRBV29-1*01 TRBJ1-2*01 104.0 6197.0 _CSDRDGGNYGYTF 7 3456 EBV-BRLF1 EBV 0.97 1264 EBV-BRLF1 174 3282 10 EBV BRLF1 YVLDHLIVV effector memory T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*02:01 B2M MHCI -2307 chip0420_644132 11.13 7.52 Chip1 T1D_2 T1D TGTGCCAGCAGCCCCTCGACTAGCGGGAGTGGGGAGACCCAGTACTTC CASSPSTSGSGETQYF TRBV3-1*01 TRBJ2-5*01 20.0 1153.0 _CASSPSTSGSGETQYF 18 4346 EBV-BRLF1 EBV 0.88 1264 EBV-BRLF1 161 4185 10 EBV BRLF1 YVLDHLIVV effector memory T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*02:01 B2M MHCI -2308 chip0420_85782 6.01 12.64 Chip1 T1D_1 T1D _ 6746 4509 M1 FLU 0.7 1250 M1 153 4356 7 InfluenzaA M1 GILGFVFTL transitional T cells between effector and memory populations PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*02:01 B2M MHCI -2309 chip0420_18920 6.73 12.19 Chip1 T1D_1 T1D _ 6746 3583 EBV-LMP2-FLY EBV 1.0 355 EBV-LMP2-FLY 130 3453 7 EBV LMP2 FLYALALLL transitional T cells between effector and memory populations PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*02:01 B2M MHCI -2310 chip0420_336255 13.96 10.08 Chip1 T1D_2 T1D TGCGCCAGCAGAGCGGGAGCCGGGGATACGCAGTATTTT CASRAGAGDTQYF TRBV10-2*01 TRBJ2-3*01 42.0 2361.0 _CASRAGAGDTQYF 59 3175 EBV-BLMF1 EBV 0.8 2531 NEG 164 3011 12 EBV BLMF1 GLCTLVAML effector T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*02:01 B2M MHCI -2311 chip0420_257440 8.69 13.97 Chip1 T1D_1 T1D TGTGCCAGTAGTATAAATGGGGGCCGGAGGGATGGCTACACCTTC CASSINGGRRDGYTF TRBV19*01 TRBJ1-2*01 35.0 896.0 _CASSINGGRRDGYTF 32 2575 M1 FLU 0.78 1250 NEG 143 2432 11 InfluenzaA M1 GILGFVFTL effector T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*02:01 B2M MHCI -2312 chip0420_160917 8.58 11.09 Chip1 T1D_2 T1D _ 6746 2800 EBV-BRLF1 EBV 0.73 1264 NEG 150 2650 7 EBV BRLF1 YVLDHLIVV transitional T cells between effector and memory populations PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*02:01 B2M MHCI -2313 chip0420_636606 12.34 7.47 Chip1 T1D_2 T1D TGTGCAGCATACGCAGGCAACATGCTCGCCTTT CAAYAGNMLAF TRAV29/DV5*01 TRAJ39*01 19.0 2052.0 TGCGCCAGCAGGATGGGGGCCGGGGATACGCAGTATTTT CASRMGAGDTQYF TRBV10-2*01 TRBJ2-3*01 23.0 1648.0 CAAYAGNMLAF_CASRMGAGDTQYF 3 2385 EBV-BLMF1 EBV 1.0 2531 NEG 154 2231 10 EBV BLMF1 GLCTLVAML effector memory T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*02:01 B2M MHCI -2314 chip0420_517119 13.62 7.81 Chip1 T1D_2 T1D TGCAGCGTGGGGACAGGGGGAACTAATGAAAAACTGTTTTTT CSVGTGGTNEKLFF TRBV29-1*01 TRBJ1-4*01 64.0 2947.0 _CSVGTGGTNEKLFF 638 2411 EBV-BLMF1 EBV 0.64 2531 NEG 145 2266 10 EBV BLMF1 GLCTLVAML effector memory T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*02:01 B2M MHCI -2315 chip0420_402322 10.52 10.63 Chip1 T1D_1 T1D TGTGCTCTCTATAACACCGACAAGCTCATCTTT CALYNTDKLIF TRAV9-2*01 TRAJ34*01 8.0 651.0 CALYNTDKLIF_ 10 4718 EBV-BLMF1 EBV 0.96 2531 EBV-BLMF1 145 4573 9 EBV BLMF1 GLCTLVAML effector memory T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*02:01 B2M MHCI -2316 chip0420_71988 10.99 11.14 Chip1 T1D_1 T1D TGCATCCTGCGACGCTATGGAGGCAGCCAAAGAAATCTCATCTTT CILRRYGGSQRNLIF TRAV26-2*01 TRAJ42*01 51.0 2001.0 TGTGCCAGCAGCCCGGTTAGCGGGTCAACCTACGAGCAGTACTTC CASSPVSGSTYEQYF TRBV3-1*01 TRBJ2-7*01 40.0 2009.0 CILRRYGGSQRNLIF_CASSPVSGSTYEQYF 1 2982 EBV-BLMF1 EBV 0.9 2531 EBV-BLMF1 138 2844 9 EBV BLMF1 GLCTLVAML effector memory T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*02:01 B2M MHCI -2317 chip0420_5845 16.01 10.38 Chip1 T1D_2 T1D TGCAGCGTGGGGACAGGGGGAACTAATGAAAAACTGTTTTTT CSVGTGGTNEKLFF TRBV29-1*01 TRBJ1-4*01 71.0 3022.0 _CSVGTGGTNEKLFF 638 2287 EBV-BLMF1 EBV 1.0 2531 NEG 153 2134 12 EBV BLMF1 GLCTLVAML effector T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*02:01 B2M MHCI -2318 chip0420_883660 14.68 8.82 Chip1 T1D_2 T1D TGTGCGGAGAGTGAACCCAAAATAACAATGCCAGACTCATGTTT CAESEPKa?tNNARLMF TRAV8-6*01 TRAJ31*01 19.0 1111.0 CAESEPKa?tNNARLMF_ 1 2039 EBV-BRLF1 EBV 0.58 1264 NEG 149 1890 12 EBV BRLF1 YVLDHLIVV effector T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*02:01 B2M MHCI -2319 chip0420_882637 14.71 12.42 Chip1 T1D_1 T1D TGCATCCTGAGACGCTATGGAGGAAGCCAAGGAAATCTCATCTTT CILRRYGGSQGNLIF TRAV26-2*01 TRAJ42*01 43.0 1994.0 TGTGCCAGCAGCCCAGTTAGCGGGTCAACCTACGAGCAGTACTTC CASSPVSGSTYEQYF TRBV3-1*01 TRBJ2-7*01 11.0 267.0 CILRRYGGSQGNLIF_CASSPVSGSTYEQYF 8 1456 EBV-BLMF1 EBV 1.0 2531 NEG 140 1316 12 EBV BLMF1 GLCTLVAML effector T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*02:01 B2M MHCI -2320 chip0420_60944 11.02 10.5 Chip1 T1D_1 T1D TGCAGCGTCGGCTCCAGGGGAACTAATGAAAAACTGTTTTTT CSVGSRGTNEKLFF TRBV29-1*01 TRBJ1-4*01 125.0 6933.0 _CSVGSRGTNEKLFF 283 3063 EBV-BLMF1 EBV 0.67 2531 NEG 141 2922 9 EBV BLMF1 GLCTLVAML effector memory T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*02:01 B2M MHCI -2321 chip0420_779315 5.95 13.22 Chip1 T1D_1 T1D TGTGCCGTGGACGAAAACCCCCTGAATTATGGAGGAAGCCAAGGAAATCTCATCTTT CAVDENPLNYGGSQGNLIF TRAV39*01 TRAJ42*01 1.0 14.0 TGTGCCAGTAGTAGGACTAGCACAGATACGCAGTATTTT CASSRTSTDTQYF TRBV19*01 TRBJ2-3*01 21.0 1560.0 CAVDENPLNYGGSQGNLIF_CASSRTSTDTQYF 1 4237 M1 FLU 0.81 1250 NEG 149 4088 7 InfluenzaA M1 GILGFVFTL transitional T cells between effector and memory populations PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*02:01 B2M MHCI -2322 chip0420_72626 15.46 10.64 Chip1 T1D_2 T1D TGTGTGGTGAACGGCAGGGATAGCAGCTATAAATTGATCTTC CVVNGRDSSYKLIF TRAV12-1*01 TRAJ12*01 55.0 2102.0 TGTGCCAGCAGCTCGGGACTAGTCGCCCCCGGGGAGCTGTTTTTT CASSSGLVAPGELFF TRBV2*01 TRBJ2-2*01 61.0 3513.0 CVVNGRDSSYKLIF_CASSSGLVAPGELFF 98 2580 EBV-BLMF1 EBV 0.88 2531 NEG 169 2411 12 EBV BLMF1 GLCTLVAML effector T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*02:01 B2M MHCI -2323 chip0420_53014 4.96 10.94 Chip1 T1D_1 T1D TGTGCTCTGAGGGGTTTCAACAAATTTTACTTT CALRGFNKFYF TRAV29/DV5*01 TRAJ21*01 2.0 30.0 TGTGCCAGTCGATCTCCGGGACTCGGCTCCTACAATGAGCAGTTCTTC CASRSPGLGSYNEQFF TRBV5-6*01 TRBJ2-1*01 32.0 1657.0 CALRGFNKFYF_CASRSPGLGSYNEQFF 1 3879 ROTA-VP2-1 ROTA 0.57 17 NEG 151 3728 6 RotavirusA VP2 SLISGMWLL central memory T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*02:01 B2M MHCI -2324 chip0420_542801 9.75 10.58 Chip1 T1D_3 T1D _ 6746 3217 BZLF1-190-197 EBV 0.62 2156 BZLF1-190-197 142 3075 9 EBV BZLF1 RAKFKQLL effector memory T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-B*08:01 B2M MHCI -2325 chip0420_560670 10.54 6.99 Chip1 T1D_1 T1D TGTGCCAGCAGCCAAAGCCCGGGTGGTACGCAGTATTTT CASSQSPGGTQYF TRBV14*01 TRBJ2-3*01 3.0 205.0 _CASSQSPGGTQYF 94 4892 EBV-BLMF1 EBV 0.6 2531 NEG 204 4688 10 EBV BLMF1 GLCTLVAML effector memory T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*02:01 B2M MHCI -2326 chip0420_617410 -2.19 8.72 Chip1 T1D_1 T1D TGTGCTGTGGACCCCATTAAGATCCCCGACTACACGCTCAGCTTT CAVDPIKIPDYTLSF TRAV2*01 TRAJ20*01 94.0 4252.0 CAVDPIKIPDYTLSF_ 1 6126 PGT-178 PGT 0.51 1480 PGT-178 136 5990 3 HomoSapiens PGT LLAGIGTVPI Naive T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*02:01 B2M MHCI -2327 chip0420_264701 13.52 6.58 Chip1 T1D_1 T1D TGTGCCAGCAGTCCGGACCAAACTAGCTCCTACAATGAGCAGTTCTTC CASSPDQTSSYNEQFF TRBV27*01 TRBJ2-1*01 30.0 1810.0 _CASSPDQTSSYNEQFF 47 4927 EBV-BRLF1 EBV 0.71 1264 NEG 155 4772 10 EBV BRLF1 YVLDHLIVV effector memory T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*02:01 B2M MHCI -2328 chip0420_176569 9.87 10.94 Chip1 T1D_1 T1D TGTGCTGTGGTCTCAAATTCCGGGTATGCACTCAACTTC CAVVSNSGYALNF TRAV21*01 TRAJ41*01 10.0 868.0 CAVVSNSGYALNF_ 4 5318 EBV-BLMF1 EBV 0.8 2531 NEG 159 5159 9 EBV BLMF1 GLCTLVAML effector memory T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*02:01 B2M MHCI -2329 chip0420_374916 15.35 12.31 Chip1 T1D_2 T1D TGTGCCGGCCGCGGGGGGTGGGTGGCTAGCGGGAGCTCCTACAATGAGCAGTTCTTC CAGRGGWVASGSSYNEQFF TRBV6-4*01 TRBJ2-1*01 3.0 115.0 _CAGRGGWVASGSSYNEQFF 1 2038 EBV-BRLF1 EBV 0.91 1264 NEG 151 1887 12 EBV BRLF1 YVLDHLIVV effector T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*02:01 B2M MHCI -2330 chip0420_72764 5.91 13.08 Chip1 healthy_1 healthy TGTGCCAGTAGTATCCGGAGCTCCTACGAGCAGTACTTC CASSIRSSYEQYF TRBV19*01 TRBJ2-7*01 36.0 1822.0 _CASSIRSSYEQYF 36 5381 M1 FLU 0.59 1250 M1 146 5235 7 InfluenzaA M1 GILGFVFTL transitional T cells between effector and memory populations PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*02:01 B2M MHCI -2331 chip0420_780632 9.26 8.16 Chip1 T1D_2 T1D TGTGCAGCTCCCCCGCCGAATGCAGGCAACATGCTCACCTTT CAAPPPNAGNMLTF TRAV29/DV5*01 TRAJ39*01 1.0 80.0 TGTGCCAGCAGCCCAGGGACGGGAGGGCACGAGCAGTACTTC CASSPGTGGHEQYF TRBV7-9*01 TRBJ2-7*01 11.0 693.0 CAAPPPNAGNMLTF_CASSPGTGGHEQYF 3 2982 EBV-BLMF1 EBV 0.62 2531 NEG 152 2830 8 EBV BLMF1 GLCTLVAML effector memory T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*02:01 B2M MHCI -2332 chip0420_458572 -1.56 9.65 Chip1 T1D_1 T1D TGCAGTGCGAACGCGGGACAGGGGTTGAATGAGCAGTTCTTC CSANAGQGLNEQFF TRBV20-1*01 TRBJ2-1*01 23.0 1534.0 _CSANAGQGLNEQFF 1 4674 PGT-178 PGT 0.44 1480 PGT-178 137 4537 3 HomoSapiens PGT LLAGIGTVPI Naive T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*02:01 B2M MHCI -2333 chip0420_274035 -3.16 11.19 Chip1 T1D_2 T1D _ 6746 3676 PGT-178 PGT 0.75 1480 PGT-178 163 3513 1 HomoSapiens PGT LLAGIGTVPI Naive T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*02:01 B2M MHCI -2334 chip0420_858382 7.34 9.94 Chip1 T1D_1 T1D TGTGCTGTGGAACCTGCTTACTACCTCAGGAACCTACAATACATCTTT CAVEPAYYLRNLQYIF TRAV2*01 TRAJ40*01 53.0 2307.0 CAVEPAYYLRNLQYIF_ 1 6144 EBV-LMP2-FLY EBV 0.81 355 EBV-LMP2-FLY 144 6000 8 EBV LMP2 FLYALALLL effector memory T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*02:01 B2M MHCI -2335 chip0420_835198 13.43 7.78 Chip1 T1D_1 T1D TGTGCCAGCAGCACGGGACAGCTATCGAACACCGGGGAGCTGTTTTTT CASSTGQLSNTGELFF TRBV9*01 TRBJ2-2*01 1.0 31.0 _CASSTGQLSNTGELFF 82 1940 EBV-BLMF1 EBV 0.88 2531 NEG 131 1809 10 EBV BLMF1 GLCTLVAML effector memory T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*02:01 B2M MHCI -2336 chip0420_752191 16.24 10.04 Chip1 T1D_1 T1D TGTGCCAGCAGCACGGGACAGCTATCGAACACCGGGGAGCTGTTTTTT CASSTGQLSNTGELFF TRBV9*01 TRBJ2-2*01 83.0 3993.0 _CASSTGQLSNTGELFF 82 2097 EBV-BLMF1 EBV 0.87 2531 NEG 147 1950 12 EBV BLMF1 GLCTLVAML effector T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*02:01 B2M MHCI -2337 chip0420_225124 9.92 8.84 Chip1 T1D_1 T1D TGCAGCGTCGGCTCCAGGGGAACTAATGAAAAACTGTTTTTT CSVGSRGTNEKLFF TRBV29-1*01 TRBJ1-4*01 73.0 4427.0 _CSVGSRGTNEKLFF 283 4590 EBV-BLMF1 EBV 0.54 2531 NEG 148 4442 8 EBV BLMF1 GLCTLVAML effector memory T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*02:01 B2M MHCI -2338 chip0420_157132 6.81 11.04 Chip1 healthy_1 healthy TGCACCAGCAGCGCGGGACAGGGACTTCCCTACGAGCAGTACTTC CTSSAGQGLPYEQYF TRBV5-1*01 TRBJ2-7*01 40.0 2035.0 _CTSSAGQGLPYEQYF 1 4450 M1 FLU 0.85 1250 M1 139 4311 7 InfluenzaA M1 GILGFVFTL transitional T cells between effector and memory populations PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*02:01 B2M MHCI -2339 chip0420_546096 11.71 10.84 Chip1 T1D_1 T1D _ 6746 3103 EBV-BLMF1 EBV 0.92 2531 NEG 151 2952 9 EBV BLMF1 GLCTLVAML effector memory T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*02:01 B2M MHCI -2340 chip0420_158742 6.06 11.43 Chip1 T1D_2 T1D TGCGCCAGCAGAGCGGGAGCCGGGGATACGCAGTATTTT CASRAGAGDTQYF TRBV10-2*01 TRBJ2-3*01 47.0 2212.0 _CASRAGAGDTQYF 59 3847 EBV-BLMF1 EBV 1.0 2531 NEG 151 3696 7 EBV BLMF1 GLCTLVAML transitional T cells between effector and memory populations PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*02:01 B2M MHCI -2341 chip0420_183683 15.51 10.22 Chip1 T1D_2 T1D TGTGCCAGCAGCCAAGGAGGGGCGGGAGCCGCAGATACGCAGTATTTT CASSQGGAGAADTQYF TRBV4-2*01 TRBJ2-3*01 134.0 4883.0 _CASSQGGAGAADTQYF 3 2715 EBV-BRLF1 EBV 1.0 1264 NEG 151 2564 12 EBV BRLF1 YVLDHLIVV effector T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*02:01 B2M MHCI -2342 chip0420_149361 9.37 9.38 Chip1 T1D_2 T1D _ 6746 4622 EBV-BRLF1 EBV 0.9 1264 NEG 158 4464 8 EBV BRLF1 YVLDHLIVV effector memory T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*02:01 B2M MHCI -2343 chip0420_809781 8.48 11.37 Chip1 T1D_2 T1D TGTGCCTGGAGTGTACAGCTAGCGGGAGTAGACGAGCAGTACTTC CAWSVQLAGVDEQYF TRBV30*01 TRBJ2-7*01 35.0 1946.0 _CAWSVQLAGVDEQYF 11 3890 EBV-BRLF1 EBV 0.75 1264 NEG 154 3736 7 EBV BRLF1 YVLDHLIVV transitional T cells between effector and memory populations PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*02:01 B2M MHCI -2344 chip0420_65373 12.53 7.3 Chip1 T1D_1 T1D TGTGCCATCAATGAGGGGCCGCTGAGCTCCTACAATGAGCAGTTCTTC CAINEGPLSSYNEQFF TRBV10-3*01 TRBJ2-1*01 28.0 1475.0 _CAINEGPLSSYNEQFF 1 2402 EBV-BRLF1 EBV 0.92 1264 EBV-BRLF1 183 2219 10 EBV BRLF1 YVLDHLIVV effector memory T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*02:01 B2M MHCI -2345 chip0420_205337 9.39 10.96 Chip1 T1D_1 T1D TGTGTGGTGAACGGGGGGGATAGCAGCTATAAATTGATCTTC CVVNGGDSSYKLIF TRAV12-1*01 TRAJ12*01 85.0 4031.0 TGTGCCAGCAGTTCGGGACAGGTACTTCCCAATGAGCAGTTCTTC CASSSGQVLPNEQFF TRBV2*01 TRBJ2-1*01 27.0 1098.0 CVVNGGDSSYKLIF_CASSSGQVLPNEQFF 31 3514 EBV-BLMF1 EBV 0.67 2531 NEG 159 3355 9 EBV BLMF1 GLCTLVAML effector memory T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*02:01 B2M MHCI -2346 chip0420_847711 10.75 10.44 Chip1 T1D_1 T1D TGTGCCAGCAGTTCGGGACAGGTACTTCCCAATGAGCAGTTCTTC CASSSGQVLPNEQFF TRBV2*01 TRBJ2-1*01 58.0 4536.0 _CASSSGQVLPNEQFF 61 4218 EBV-BLMF1 EBV 0.5 2531 NEG 135 4083 9 EBV BLMF1 GLCTLVAML effector memory T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*02:01 B2M MHCI -2347 chip0420_625013 -2.38 8.69 Chip1 T1D_1 T1D _ 6746 6047 PGT-178 PGT 0.64 1480 PGT-178 150 5897 2 HomoSapiens PGT LLAGIGTVPI Naive T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*02:01 B2M MHCI -2348 chip0420_388843 12.93 8.02 Chip1 T1D_2 T1D TTTGCCAGCAGCCCCTCGACGAGCGGGTCTGGGTAGACCCAGTACTTC FASSPSTSGSG*TQYF TRBV3-1*01 TRBJ2-5*01 2.0 113.0 _FASSPSTSGSG*TQYF 1 2151 EBV-BRLF1 EBV 0.92 1264 EBV-BRLF1 136 2015 10 EBV BRLF1 YVLDHLIVV effector memory T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*02:01 B2M MHCI -2349 chip0420_319669 14.18 10.13 Chip1 T1D_1 T1D TGCAGCGTGGGGACAGGGGGAACTAATGAAAAACTGTTTTTT CSVGTGGTNEKLFF TRBV29-1*01 TRBJ1-4*01 6.0 157.0 _CSVGTGGTNEKLFF 638 4840 EBV-BLMF1 EBV 0.8 2531 NEG 137 4703 12 EBV BLMF1 GLCTLVAML effector T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*02:01 B2M MHCI -2350 chip0420_27313 15.29 10.58 Chip1 T1D_1 T1D TGCGGCCCAGAGGAACCTAACGACTACAAGCTCAGCTTT CGPEEPNDYKLSF TRAV30*01 TRAJ20*01 32.0 2086.0 TGTGCCAGCAGCACGGGACAGCTATCGAACACCGGGGAGCTGTTTTTT CASSTGQLSNTGELFF TRBV9*01 TRBJ2-2*01 59.0 3179.0 CGPEEPNDYKLSF_CASSTGQLSNTGELFF 14 4144 EBV-BLMF1 EBV 0.68 2531 EBV-BLMF1 157 3987 12 EBV BLMF1 GLCTLVAML effector T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*02:01 B2M MHCI -2351 chip0420_523492 11.23 12.08 Chip1 T1D_1 T1D TGCAGCGTCGGCTCCAGGGGAACTAATGAAAAACTGTTTTTT CSVGSRGTNEKLFF TRBV29-1*01 TRBJ1-4*01 65.0 3735.0 _CSVGSRGTNEKLFF 283 1978 EBV-BLMF1 EBV 0.91 2531 NEG 128 1850 9 EBV BLMF1 GLCTLVAML effector memory T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*02:01 B2M MHCI -2352 chip0420_280413 12.68 13.59 Chip1 T1D_1 T1D TGCGGCCCAGAGGAACCTAACGACTACAAGCTCAGCTTT CGPEEPNDYKLSF TRAV30*01 TRAJ20*01 18.0 1162.0 TGTGCCAGCAGCACGGGACAGCTATCGAACACCGGGGAGCTGTTTTTT CASSTGQLSNTGELFF TRBV9*01 TRBJ2-2*01 20.0 778.0 CGPEEPNDYKLSF_CASSTGQLSNTGELFF 14 1428 EBV-BLMF1 EBV 0.6 2531 NEG 126 1302 11 EBV BLMF1 GLCTLVAML effector T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*02:01 B2M MHCI -2353 chip0420_760880 11.8 6.97 Chip1 T1D_1 T1D _ 6746 4217 HCVNS4B-1807-1816 HCV 0.95 74 HCVNS4B-1807-1816 137 4080 10 HCV NS4B LLFNILGGWV effector memory T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*02:01 B2M MHCI -2354 chip0420_200160 -3.8 11.12 Chip1 T1D_1 T1D _ 6746 5195 PGT-178 PGT 0.74 1480 PGT-178 131 5064 1 HomoSapiens PGT LLAGIGTVPI Naive T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*02:01 B2M MHCI -2355 chip0420_562972 7.46 10.17 Chip1 T1D_1 T1D _ 6746 4631 M1 FLU 0.93 1250 M1 155 4476 7 InfluenzaA M1 GILGFVFTL transitional T cells between effector and memory populations PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*02:01 B2M MHCI -2356 chip0420_443557 14.67 9.34 Chip1 T1D_1 T1D TGTGCTGACTTAGAATGCTGGCAACAGCCGTAAGCTGATTTGG CADLECW??cNSRKLIW TRAV36/DV7*01 TRAJ38*01 70.0 3222.0 CADLECW??cNSRKLIW_ 1 3988 EBV-BLMF1 EBV 0.5 2531 NEG 150 3838 12 EBV BLMF1 GLCTLVAML effector T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*02:01 B2M MHCI -2357 chip0420_576035 15.74 11.16 Chip1 T1D_1 T1D _ 6746 1832 EBV-BLMF1 EBV 0.67 2531 NEG 136 1696 12 EBV BLMF1 GLCTLVAML effector T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*02:01 B2M MHCI -2358 chip0420_174528 6.81 13.4 Chip1 T1D_1 T1D _ 6746 4883 M1 FLU 0.64 1250 M1 128 4755 7 InfluenzaA M1 GILGFVFTL transitional T cells between effector and memory populations PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*02:01 B2M MHCI -2359 chip0420_130748 13.96 7.45 Chip1 T1D_3 T1D _ 6746 3530 BZLF1-190-197 EBV 0.59 2156 NEG 138 3392 10 EBV BZLF1 RAKFKQLL effector memory T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-B*08:01 B2M MHCI -2360 chip0420_31224 13.97 9.94 Chip1 T1D_2 T1D TGTGCAGAGAGTACTTCGGGAGGAAAGCTTATCTTC CAESTSGGKLIF TRAV5*01 TRAJ23*01 65.0 4327.0 TGCAGCGTGGGGACAGGGGGAACTAATGAAAAACTGTTTTTT CSVGTGGTNEKLFF TRBV29-1*01 TRBJ1-4*01 80.0 3806.0 CAESTSGGKLIF_CSVGTGGTNEKLFF 107 2632 EBV-BLMF1 EBV 0.75 2531 NEG 154 2478 12 EBV BLMF1 GLCTLVAML effector T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*02:01 B2M MHCI -2361 chip0420_582785 12.64 7.39 Chip1 T1D_2 T1D TGTGCCAGCAGTGAATGGACAGGGTATCAGCCCCAGCATTTT CASSEWTGYQPQHF TRBV6-1*01 TRBJ1-5*01 15.0 410.0 _CASSEWTGYQPQHF 9 3207 EBV-BLMF1 EBV 1.0 2531 NEG 154 3053 10 EBV BLMF1 GLCTLVAML effector memory T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*02:01 B2M MHCI -2362 chip0420_413941 6.21 12.83 Chip1 T1D_1 T1D _ 6746 4855 M1 FLU 0.87 1250 M1 140 4715 7 InfluenzaA M1 GILGFVFTL transitional T cells between effector and memory populations PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*02:01 B2M MHCI -2363 chip0420_202219 13.17 12.78 Chip1 T1D_1 T1D TGTGCTGACTTAGAATGCTGGCAACAACCGTAAGCTGATTTGG CADLECW??cNNRKLIW TRAV36/DV7*01 TRAJ38*01 4.0 243.0 CADLECW??cNNRKLIW_ 1 2396 EBV-BLMF1 EBV 0.75 2531 NEG 152 2244 11 EBV BLMF1 GLCTLVAML effector T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*02:01 B2M MHCI -2364 chip0420_570161 14.2 8.59 Chip1 T1D_2 T1D TGTGCCAGCAGCTTAGAGTCGGGACTACTTCACAATGAGCAGTTCTTC CASSLESGLLHNEQFF TRBV11-3*01 TRBJ2-1*01 8.0 295.0 _CASSLESGLLHNEQFF 2 3057 EBV-BLMF1 EBV 0.71 2531 NEG 143 2914 10 EBV BLMF1 GLCTLVAML effector memory T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*02:01 B2M MHCI -2365 chip0420_458213 -0.5 4.63 Chip1 T1D_1 T1D _ 6746 3735 PREINS-2-10 INS 0.78 37 PREINS-2-10 129 3606 1 HomoSapiens PREINS ALWMRLLPL Naive T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*02:01 B2M MHCI -2366 chip0420_758457 16.48 11.35 Chip1 T1D_2 T1D TGTGCCGTGTCCGGAGGCTTCAAAACTATCTTT CAVSGGFKTIF TRAV12-2*01 TRAJ9*01 1.0 92.0 CAVSGGFKTIF_ 1 1756 IAPP-5-13 IAPP 0.64 30 NEG 160 1596 12 HomoSapiens IAPP KLQVFLIVL effector T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*02:01 B2M MHCI -2367 chip0420_524112 -1.91 10.88 Chip1 healthy_2 healthy _ 6746 4014 GAD2-SRK-8 GAD65 0.67 10 NEG 154 3860 3 HomoSapiens GAD2 SRKHKWKL Naive T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-B*08:01 B2M MHCI -2368 chip0420_871565 12.05 8.74 Chip1 T1D_1 T1D TGTGCCAGCAGCCCAGTTAGCGGGTCAACCTACGAGCAGTACTTC CASSPVSGSTYEQYF TRBV3-1*01 TRBJ2-7*01 2.0 134.0 _CASSPVSGSTYEQYF 80 2575 EBV-BLMF1 EBV 0.78 2531 NEG 154 2421 10 EBV BLMF1 GLCTLVAML effector memory T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*02:01 B2M MHCI -2369 chip0420_182795 -2.08 8.45 Chip1 T1D_2 T1D TGTGCCGTGATGGCGCGGCAAAGCTGCAGGCAACAAGCTAACTTTT CAVMARQag??ctAGNKLTF TRAV8-1*01 TRAJ17*01 3.0 328.0 TGTGCCAGCAGCCCGTCTTCCAGGGGGACTGAAGCTTTCTTT CASSPSSRGTEAFF TRBV7-2*01 TRBJ1-1*01 19.0 824.0 CAVMARQag??ctAGNKLTF_CASSPSSRGTEAFF 1 5941 PTPRN-962-970 PTPRN 0.67 5 NEG 138 5803 2 HomoSapiens PTPRN ALTAVAEEV Naive T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*02:01 B2M MHCI -2370 chip0420_133768 14.86 10.31 Chip1 T1D_2 T1D _ 6746 3185 EBV-BLMF1 EBV 0.64 2531 NEG 136 3049 12 EBV BLMF1 GLCTLVAML effector T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*02:01 B2M MHCI -2371 chip0420_40411 10.09 10.49 Chip1 T1D_2 T1D TGCAGCGTTGGGGGCAGCTTCTATGGCTACACCTTC CSVGGSFYGYTF TRBV29-1*01 TRBJ1-2*01 47.0 3811.0 _CSVGGSFYGYTF 42 3388 EBV-BLMF1 EBV 1.0 2531 NEG 140 3248 9 EBV BLMF1 GLCTLVAML effector memory T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*02:01 B2M MHCI -2372 chip0420_438686 9.26 7.58 Chip1 T1D_1 T1D TGTGCCAGCAGTCCCATCAATGAGCAGTTCTTC CASSPINEQFF TRBV6-1*01 TRBJ2-1*01 19.0 1065.0 _CASSPINEQFF 2 4982 EBV-BRLF1 EBV 0.41 1264 EBV-BRLF1 154 4828 8 EBV BRLF1 YVLDHLIVV effector memory T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*02:01 B2M MHCI -2373 chip0420_249740 8.66 10.28 Chip1 T1D_2 T1D TGTGCCGTGAAGGACACCGACAAGCTCATCTTT CAVKDTDKLIF TRAV8-1*01 TRAJ34*01 39.0 2118.0 TGCGCCAGCAGTCATCAGGCCTCCGAGCAGTACTTC CASSHQASEQYF TRBV10-1*01 TRBJ2-7*01 10.0 251.0 CAVKDTDKLIF_CASSHQASEQYF 2 3847 EBV-BRLF1 EBV 0.96 1264 EBV-BRLF1 168 3679 8 EBV BRLF1 YVLDHLIVV effector memory T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*02:01 B2M MHCI -2374 chip0420_43632 11.25 7.47 Chip1 T1D_2 T1D TGTGCCGTGAAGGACACCGACAAGCTCATCTTT CAVKDTDKLIF TRAV8-1*01 TRAJ34*01 19.0 1915.0 TGTGCCTGGAGTGTACAGCTAGCGGGAGTAGACGAGCAGTACTTC CAWSVQLAGVDEQYF TRBV30*01 TRBJ2-7*01 24.0 970.0 CAVKDTDKLIF_CAWSVQLAGVDEQYF 9 3590 EBV-BRLF1 EBV 0.85 1264 NEG 171 3419 10 EBV BRLF1 YVLDHLIVV effector memory T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*02:01 B2M MHCI -2375 chip0420_763033 5.0 11.75 Chip1 T1D_2 T1D TGTGCCGTGTCACCCCAGAAAGTTACCTTT CAVSPQKVTF TRAV8-1*01 TRAJ13*01 27.0 2230.0 TGTGCCAGCAGCGACCTAGCCTACGAGCAGTACTTC CASSDLAYEQYF TRBV7-8*01 TRBJ2-7*01 20.0 1369.0 CAVSPQKVTF_CASSDLAYEQYF 1 2961 EBV-LMP1-1 EBV 0.55 237 NEG 152 2809 6 EBV LMP1 YLLEMLWRL central memory T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*02:01 B2M MHCI -2376 chip0420_319736 12.66 8.29 Chip1 T1D_2 T1D _ 6746 2015 EBV-BLMF1 EBV 0.89 2531 NEG 143 1872 10 EBV BLMF1 GLCTLVAML effector memory T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*02:01 B2M MHCI -2377 chip0420_277978 -2.64 8.21 Chip1 T1D_2 T1D TGCGCCAGCAGCCAAGATCCCCTTGTAGCGGGAGGTATGCAGTATTTT CASSQDPLVAGGMQYF TRBV4-3*01 TRBJ2-3*01 30.0 1623.0 _CASSQDPLVAGGMQYF 1 6206 PGT-178 PGT 0.6 1480 PGT-178 153 6053 2 HomoSapiens PGT LLAGIGTVPI Naive T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*02:01 B2M MHCI -2378 chip0420_155956 14.77 10.17 Chip1 T1D_1 T1D TGCGGCACAGAGGAACCTAACGACTACAAGCTCAGCTTT CGTEEPNDYKLSF TRAV30*01 TRAJ20*01 63.0 4317.0 CGTEEPNDYKLSF_ 22 3027 EBV-BLMF1 EBV 0.54 2531 NEG 140 2887 12 EBV BLMF1 GLCTLVAML effector T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*02:01 B2M MHCI -2379 chip0420_113486 14.53 10.4 Chip1 T1D_2 T1D TGTGTGGTGAACGGCAGGGATAGCAGCTATAAATTGATCTTC CVVNGRDSSYKLIF TRAV12-1*01 TRAJ12*01 4.0 180.0 TGTGCCAGCAGCTCGGGACTAGTCGCCCCCGGGGAGCTGTTTTTT CASSSGLVAPGELFF TRBV2*01 TRBJ2-2*01 62.0 3275.0 CVVNGRDSSYKLIF_CASSSGLVAPGELFF 98 3057 EBV-BLMF1 EBV 0.58 2531 NEG 158 2899 12 EBV BLMF1 GLCTLVAML effector T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*02:01 B2M MHCI -2380 chip0420_78425 14.11 9.88 Chip1 T1D_2 T1D TGCGCCAGCAGTCAATCGAGAGGGTCGCTCTGGGATACGCAGTATTTT CASSQSRGSLWDTQYF TRBV4-3*01 TRBJ2-3*01 10.0 533.0 _CASSQSRGSLWDTQYF 21 2860 EBV-BRLF1 EBV 0.93 1264 NEG 158 2702 12 EBV BRLF1 YVLDHLIVV effector T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*02:01 B2M MHCI -2381 chip0420_726551 10.96 12.89 Chip1 T1D_1 T1D TGTGCCAGCAGCTCAGGGTATGAGGAGACCCAGTACTTC CASSSGYEETQYF TRBV7-9*01 TRBJ2-5*01 1.0 45.0 _CASSSGYEETQYF 1 2729 EBV-BRLF1 EBV 0.73 1264 NEG 155 2574 11 EBV BRLF1 YVLDHLIVV effector T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*02:01 B2M MHCI -2382 chip0420_465659 -2.89 11.81 Chip1 T1D_1 T1D _ 6746 4955 ZNT8-165-173 ZNT8 0.73 11 ZNT8-165-173 137 4818 1 HomoSapiens ZNT8 RLLYPDYQI Naive T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*02:01 B2M MHCI -2383 chip0420_796078 15.84 11.25 Chip1 T1D_2 T1D _ 6746 1567 EBV-BRLF1 EBV 0.88 1264 NEG 141 1426 12 EBV BRLF1 YVLDHLIVV effector T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*02:01 B2M MHCI -2384 chip0420_742978 -0.41 6.8 Chip1 T1D_3 T1D TGTGCCAGCAAGCACAGGGGGACATACTACGAGCAGTACTTC CASKHRGTYYEQYF TRBV28*01 TRBJ2-7*01 24.0 1149.0 _CASKHRGTYYEQYF 1 6775 PB1-590-599 FLU 0.56 37 NEG 144 6631 3 InfluenzaA PB1 LVSDGGPNLY Naive T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*01:01 B2M MHCI -2385 chip0420_202110 -3.76 9.68 Chip1 T1D_1 T1D TGCGCCAGCAGCTTGACGCTGGAGGGGGGGACTGAAGCTTTCTTT CASSLTLEGGTEAFF TRBV5-1*01 TRBJ1-1*01 32.0 1408.0 _CASSLTLEGGTEAFF 1 5045 IGRP-152-160-WLI IGRP 0.55 27 NEG 134 4911 2 HomoSapiens IGRP FLWSVFWLI Naive T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*02:01 B2M MHCI -2386 chip0420_879700 11.91 6.85 Chip1 T1D_1 T1D TGCAACACCCAAGAGGGGGGGTATGGCTACACCTTC CNTQEGGYGYTF TRBV29-1*01 TRBJ1-2*01 38.0 2475.0 _CNTQEGGYGYTF 1 4401 EBV-BLMF1 EBV 0.44 2531 EBV-BLMF1 157 4244 10 EBV BLMF1 GLCTLVAML effector memory T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*02:01 B2M MHCI -2387 chip0420_229985 5.08 9.69 Chip1 T1D_1 T1D TGTGCCAGCAGCATTCGGGCGGGAGGTTCGTACGAGCAGTACTTC CASSIRAGGSYEQYF TRBV28*01 TRBJ2-7*01 29.0 1602.0 _CASSIRAGGSYEQYF 1 3175 EBV-LMP1-1 EBV 0.93 237 NEG 138 3037 6 EBV LMP1 YLLEMLWRL central memory T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*02:01 B2M MHCI -2388 chip0420_548527 15.27 12.23 Chip1 T1D_2 T1D TGTGCCAGCAGCAGAAGGACCCTAAACTCTGGGGCCAACGTCCTGACTTTC CASSRRTLNSGANVLTF TRBV13*01 TRBJ2-6*01 16.0 531.0 _CASSRRTLNSGANVLTF 9 1908 EBV-BRLF1 EBV 0.65 1264 NEG 139 1769 12 EBV BRLF1 YVLDHLIVV effector T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*02:01 B2M MHCI -2389 chip0420_566388 -2.49 13.45 Chip1 T1D_1 T1D TGTGCCAGCAGGGGGGTTCCCGGGGAGCTGTTTTTT CASRGVPGELFF TRBV13*01 TRBJ2-2*01 2.0 249.0 _CASRGVPGELFF 1 3371 NEF-136-145 FLU 0.43 9 NEG 140 3231 1 InfluenzaA NEF PLTFGWCYKL Naive T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*02:01 B2M MHCI -2390 chip0420_398119 10.11 10.39 Chip1 T1D_2 T1D TGTGCAGAGAGCCCTTCCTCAGGAACCTACAAATACATCTTT CAESPSSGTYKYIF TRAV5*01 TRAJ40*01 36.0 2416.0 CAESPSSGTYKYIF_ 1 3013 EBV-BLMF1 EBV 1.0 2531 NEG 155 2858 9 EBV BLMF1 GLCTLVAML effector memory T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*02:01 B2M MHCI -2391 chip0420_358937 9.58 9.19 Chip1 T1D_1 T1D _ 6746 4505 EBV-BLMF1 EBV 0.89 2531 EBV-BLMF1 146 4359 8 EBV BLMF1 GLCTLVAML effector memory T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*02:01 B2M MHCI -2392 chip0420_813595 8.69 10.37 Chip1 T1D_2 T1D TGTGCAGAGAGTACTTCGGGAGGAAAGCTTATCTTC CAESTSGGKLIF TRAV5*01 TRAJ23*01 30.0 2202.0 TGCAGCGTGGGAACAGGGGGAACTAATGAAAAACTGTTTTTT CSVGTGGTNEKLFF TRBV29-1*01 TRBJ1-4*01 48.0 2649.0 CAESTSGGKLIF_CSVGTGGTNEKLFF 107 4505 EBV-BLMF1 EBV 0.5 2531 NEG 157 4348 8 EBV BLMF1 GLCTLVAML effector memory T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*02:01 B2M MHCI -2393 chip0420_142316 9.55 9.09 Chip1 T1D_1 T1D TGTGCCACCCAACAGGGGAGGGACAGTCAGCCCCAGCATTTT CATQQGRDSQPQHF TRBV28*01 TRBJ1-5*01 7.0 212.0 _CATQQGRDSQPQHF 52 4185 EBV-BLMF1 EBV 0.88 2531 EBV-BLMF1 158 4027 8 EBV BLMF1 GLCTLVAML effector memory T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*02:01 B2M MHCI -2394 chip0420_504254 11.24 12.09 Chip1 T1D_1 T1D TGCAGCGTCGGCTCCAGGGGAACTAATGAAAAACTGTTTTTT CSVGSRGTNEKLFF TRBV29-1*01 TRBJ1-4*01 45.0 2176.0 _CSVGSRGTNEKLFF 283 3394 EBV-BLMF1 EBV 0.57 2531 NEG 150 3244 11 EBV BLMF1 GLCTLVAML effector T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*02:01 B2M MHCI -2395 chip0420_78835 6.17 13.02 Chip1 T1D_1 T1D TGTGCTGTGAGTGATCGGGATGGCGGCTTCAAAACTATCTTT CAVSDRDGGFKTIF TRAV8-4*01 TRAJ9*01 41.0 2071.0 CAVSDRDGGFKTIF_ 6 4152 M1 FLU 0.94 1250 M1 135 4017 7 InfluenzaA M1 GILGFVFTL transitional T cells between effector and memory populations PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*02:01 B2M MHCI -2396 chip0420_536948 9.57 7.48 Chip1 T1D_2 T1D TGCGCCAGCAGAGCGGGAGCCGGGGATACGCAGTATTTT CASRAGAGDTQYF TRBV10-2*01 TRBJ2-3*01 44.0 2915.0 _CASRAGAGDTQYF 59 4675 EBV-BLMF1 EBV 0.88 2531 NEG 152 4523 10 EBV BLMF1 GLCTLVAML effector memory T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*02:01 B2M MHCI -2397 chip0420_400967 5.53 12.15 Chip1 T1D_2 T1D _ 6746 3437 PGT-178 PGT 1.0 1480 PGT-178 143 3294 7 HomoSapiens PGT LLAGIGTVPI transitional T cells between effector and memory populations PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*02:01 B2M MHCI -2398 chip0420_228589 12.74 7.24 Chip1 T1D_2 T1D TGCAGCGTGGGGACAGGGGGAACTAATGAAAAACTGTTTTTT CSVGTGGTNEKLFF TRBV29-1*01 TRBJ1-4*01 26.0 1487.0 _CSVGTGGTNEKLFF 638 3131 EBV-BLMF1 EBV 1.0 2531 NEG 164 2967 10 EBV BLMF1 GLCTLVAML effector memory T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*02:01 B2M MHCI -2399 chip0420_574301 14.12 9.94 Chip1 T1D_1 T1D _ 6746 4056 EBV-BLMF1 EBV 0.5 2531 NEG 150 3906 12 EBV BLMF1 GLCTLVAML effector T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*02:01 B2M MHCI -2400 chip0420_349275 11.4 6.77 Chip1 T1D_2 T1D TGCAGCGTGGGGACAGGGGGAACTAATGAAAAACTGTTTTTT CSVGTGGTNEKLFF TRBV29-1*01 TRBJ1-4*01 68.0 3372.0 _CSVGTGGTNEKLFF 638 4097 EBV-BLMF1 EBV 0.88 2531 NEG 156 3941 10 EBV BLMF1 GLCTLVAML effector memory T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*02:01 B2M MHCI -2401 chip0420_192654 9.04 11.05 Chip1 T1D_2 T1D TGCAGCGTGGGGACAGGGGGAACTAATGAAAAACTGTTTTTT CSVGTGGTNEKLFF TRBV29-1*01 TRBJ1-4*01 43.0 2287.0 _CSVGTGGTNEKLFF 638 4303 EBV-BLMF1 EBV 0.62 2531 NEG 146 4157 9 EBV BLMF1 GLCTLVAML effector memory T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*02:01 B2M MHCI -2402 chip0420_876784 15.75 10.37 Chip1 T1D_1 T1D TGTGTGGTGAACGGACGGGATAGCAGCTATAAATTGATCTTC CVVNGRDSSYKLIF TRAV12-1*01 TRAJ12*01 38.0 1957.0 CVVNGRDSSYKLIF_ 17 2846 EBV-BLMF1 EBV 0.58 2531 NEG 131 2715 12 EBV BLMF1 GLCTLVAML effector T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*02:01 B2M MHCI -2403 chip0420_412563 5.83 13.01 Chip1 T1D_1 T1D _ 6746 4929 M1 FLU 0.61 1250 M1 141 4788 7 InfluenzaA M1 GILGFVFTL transitional T cells between effector and memory populations PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*02:01 B2M MHCI -2404 chip0420_85755 5.87 12.18 Chip1 healthy_1 healthy TGTGCTCTGAGTGAGGCGGGACACCGGTAACCAGTTCTCTTTT CALSEAG??cTGNQFSF TRAV19*01 TRAJ49*01 22.0 1295.0 CALSEAG??cTGNQFSF_ 1 5558 M1 FLU 0.78 1250 M1 136 5422 7 InfluenzaA M1 GILGFVFTL transitional T cells between effector and memory populations PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*02:01 B2M MHCI -2405 chip0420_382446 12.66 8.36 Chip1 T1D_2 T1D TGTGCCAGCAAGGGGATCGATGGCTACACCTTC CASKGIDGYTF TRBV13*01 TRBJ1-2*01 6.0 596.0 _CASKGIDGYTF 2 2155 EBV-BRLF1 EBV 0.91 1264 EBV-BRLF1 156 1999 10 EBV BRLF1 YVLDHLIVV effector memory T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*02:01 B2M MHCI -2406 chip0420_275841 6.11 12.4 Chip1 T1D_2 T1D TGTGCTGTGAGAGACAAAGCTGCAGGCAACAAGCTAACTTTT CAVRDKAAGNKLTF TRAV3*01 TRAJ17*01 44.0 2544.0 TGTGCCACTCAGGAGGCGGGAGGTATCCCAGATACGCAGTATTTT CATQEAGGIPDTQYF TRBV19*01 TRBJ2-3*01 13.0 852.0 CAVRDKAAGNKLTF_CATQEAGGIPDTQYF 1 5077 CVB3-P3A CVB 0.9 77 CVB3-P3A 157 4920 7 CoxsackievirusB P3A GIIYIIYKL transitional T cells between effector and memory populations PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*02:01 B2M MHCI -2407 chip0420_193374 -0.34 8.71 Chip1 T1D_2 T1D TGTGCCAGCAGCAACGGACAGGGGGGCGAAAAACTGTTTTTT CASSNGQGGEKLFF TRBV12-3*01,TRBV12-4*01 TRBJ1-4*01 58.0 3339.0 _CASSNGQGGEKLFF 1 6435 PGT-178 PGT 0.88 1480 PGT-178 138 6297 4 HomoSapiens PGT LLAGIGTVPI Naive T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*02:01 B2M MHCI -2408 chip0420_807957 11.21 7.77 Chip1 T1D_2 T1D TGTGCCCGTAGTATAGTCCCCGCCGGGGAGCTGTTTTTT CARSIVPAGELFF TRBV19*01 TRBJ2-2*01 1.0 75.0 _CARSIVPAGELFF 1 2804 EBV-BLMF1 EBV 0.73 2531 NEG 148 2656 10 EBV BLMF1 GLCTLVAML effector memory T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*02:01 B2M MHCI -2409 chip0420_805683 8.83 13.9 Chip1 T1D_1 T1D TGTGCCAGTAGTACCGGGACACCTGTCTTCTTC CASSTGTPVFF TRBV19*01 TRBJ2-1*01 4.0 624.0 _CASSTGTPVFF 1 2363 M1 FLU 1.0 1250 NEG 161 2202 11 InfluenzaA M1 GILGFVFTL effector T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*02:01 B2M MHCI -2410 chip0420_126049 5.82 10.29 Chip1 T1D_2 T1D _ 6746 2946 EBV-LMP2-FLY EBV 0.92 355 EBV-LMP2-FLY 144 2802 6 EBV LMP2 FLYALALLL central memory T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*02:01 B2M MHCI -2411 chip0420_854188 9.14 8.75 Chip1 T1D_3 T1D TGTGCTGTGCGCGTCTGGGCCGGCTTT CAVRVWAGF TRAV3*01 TRAJ34*01 3.0 16.0 CAVRVWAGF_ 1 3959 BZLF1-190-197 EBV 0.79 2156 NEG 153 3806 8 EBV BZLF1 RAKFKQLL effector memory T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-B*08:01 B2M MHCI -2412 chip0420_702845 11.11 10.88 Chip1 T1D_2 T1D TGTGCCGTGAAGGACACCGACAAGCTCATCTTT CAVKDTDKLIF TRAV8-1*01 TRAJ34*01 28.0 2309.0 CAVKDTDKLIF_ 56 4286 EBV-BRLF1 EBV 0.87 1264 EBV-BRLF1 152 4134 9 EBV BRLF1 YVLDHLIVV effector memory T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*02:01 B2M MHCI -2413 chip0420_639245 11.67 9.67 Chip1 T1D_2 T1D TGCAGCGTGGGGACAGGGGGAACTAATGAAAAACTGTTTTTT CSVGTGGTNEKLFF TRBV29-1*01 TRBJ1-4*01 76.0 4502.0 _CSVGTGGTNEKLFF 638 2127 EBV-BLMF1 EBV 1.0 2531 NEG 159 1968 9 EBV BLMF1 GLCTLVAML effector memory T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*02:01 B2M MHCI -2414 chip0420_541986 11.74 7.54 Chip1 T1D_2 T1D _ 6746 3397 EBV-BLMF1 EBV 0.67 2531 NEG 148 3249 10 EBV BLMF1 GLCTLVAML effector memory T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*02:01 B2M MHCI -2415 chip0420_391283 9.78 9.95 Chip1 T1D_1 T1D _ 6746 3925 EBV-BLMF1 EBV 1.0 2531 NEG 149 3776 9 EBV BLMF1 GLCTLVAML effector memory T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*02:01 B2M MHCI -2416 chip0420_295344 -0.9 8.65 Chip1 T1D_1 T1D _ 6746 4532 ZNT8-253-261 ZNT8 0.85 1 ZNT8-253-261 136 4396 4 HomoSapiens ZNT8 FIFSILVLA Naive T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*02:01 B2M MHCI -2417 chip0420_465922 11.37 10.6 Chip1 T1D_1 T1D TGCAGCGTCGGCTCCAGGGGAACTAATGAAAAACTGTTTTTT CSVGSRGTNEKLFF TRBV29-1*01 TRBJ1-4*01 67.0 2276.0 _CSVGSRGTNEKLFF 283 4857 EBV-BLMF1 EBV 0.75 2531 NEG 134 4723 9 EBV BLMF1 GLCTLVAML effector memory T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*02:01 B2M MHCI -2418 chip0420_391935 13.3 7.82 Chip1 T1D_1 T1D TGTGCCAGCAGTCCGGACCAAACTAGCTCCTACAATGAGCAGTTCTTC CASSPDQTSSYNEQFF TRBV27*01 TRBJ2-1*01 30.0 1938.0 _CASSPDQTSSYNEQFF 47 2833 EBV-BRLF1 EBV 0.74 1264 EBV-BRLF1 157 2676 10 EBV BRLF1 YVLDHLIVV effector memory T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*02:01 B2M MHCI -2419 chip0420_260243 10.02 8.54 Chip1 T1D_2 T1D TGCAGCGTGGGGACAGGGGGAACTAATGAAAAACTGTTTTTT CSVGTGGTNEKLFF TRBV29-1*01 TRBJ1-4*01 2.0 91.0 _CSVGTGGTNEKLFF 638 2965 EBV-BLMF1 EBV 0.8 2531 NEG 145 2820 8 EBV BLMF1 GLCTLVAML effector memory T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*02:01 B2M MHCI -2420 chip0420_730694 11.85 10.34 Chip1 T1D_1 T1D TGTGCCAGCAGCCAAAGCCCGGGTGGTACGCAGTATTTT CASSQSPGGTQYF TRBV14*01 TRBJ2-3*01 9.0 509.0 _CASSQSPGGTQYF 94 3842 EBV-BLMF1 EBV 0.56 2531 NEG 154 3688 9 EBV BLMF1 GLCTLVAML effector memory T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*02:01 B2M MHCI -2421 chip0420_71491 10.33 9.06 Chip1 T1D_2 T1D TGTGTGGTGAACGGCAGGGATAGCAGCTATAAATTGATCTTC CVVNGRDSSYKLIF TRAV12-1*01 TRAJ12*01 1.0 142.0 TGTGCCAGCAGCTCGGGACTAGTCGCCCCCGGGGAGCTGTTTTTT CASSSGLVAPGELFF TRBV2*01 TRBJ2-2*01 120.0 6937.0 CVVNGRDSSYKLIF_CASSSGLVAPGELFF 98 4591 EBV-BLMF1 EBV 0.67 2531 NEG 145 4446 10 EBV BLMF1 GLCTLVAML effector memory T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*02:01 B2M MHCI -2422 chip0420_37063 12.34 13.06 Chip1 T1D_2 T1D _ 6746 1476 EBV-BLMF1 EBV 0.67 2531 NEG 166 1310 11 EBV BLMF1 GLCTLVAML effector T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*02:01 B2M MHCI -2423 chip0420_824157 -3.31 13.11 Chip1 T1D_2 T1D TGTGCCGTGATGGGCTTTCAGAAACTTGTATTT CAVMGFQKLVF TRAV12-2*01 TRAJ8*01 9.0 980.0 CAVMGFQKLVF_ 1 2784 PGT-178 PGT 0.75 1480 PGT-178 147 2637 1 HomoSapiens PGT LLAGIGTVPI Naive T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*02:01 B2M MHCI -2424 chip0420_715669 5.15 10.7 Chip1 T1D_2 T1D TGTGCCGTGAGCGGTACTAGCTATGGAAAGCTGACATTT CAVSGTSYGKLTF TRAV12-2*01 TRAJ52*01 71.0 3818.0 TGTGCCAGCAGCTTTGGGGGGCAGCCCCAGCATTTT CASSFGGQPQHF TRBV13*01 TRBJ1-5*01 19.0 1066.0 CAVSGTSYGKLTF_CASSFGGQPQHF 1 5542 MART1-ALA MART1 0.67 269 NEG 146 5396 6 HomoSapiens MART1 ALAGIGILTV central memory T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*02:01 B2M MHCI -2425 chip0420_111572 11.08 11.14 Chip1 T1D_1 T1D _ 6746 2637 EBV-BLMF1 EBV 0.78 2531 NEG 158 2479 9 EBV BLMF1 GLCTLVAML effector memory T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*02:01 B2M MHCI -2426 chip0420_858358 12.21 7.46 Chip1 T1D_2 T1D TGTGCTTCCCTAACCCCGGGGGCTTCCCCGATAATCTTT CASLTPGASPIIF TRAV8-6*01 TRAJ3*01 28.0 2144.0 TGTGCCAGCTGCTCGGGACTCGTCGCCCCCGGGGAGCTGTTTTTT CASCSGLVAPGELFF TRBV2*01 TRBJ2-2*01 8.0 290.0 CASLTPGASPIIF_CASCSGLVAPGELFF 1 2697 EBV-BLMF1 EBV 0.5 2531 NEG 142 2555 10 EBV BLMF1 GLCTLVAML effector memory T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*02:01 B2M MHCI -2427 chip0420_594837 15.94 9.93 Chip1 T1D_2 T1D _ 6746 2565 EBV-BRLF1 EBV 0.94 1264 EBV-BRLF1 156 2409 12 EBV BRLF1 YVLDHLIVV effector T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*02:01 B2M MHCI -2428 chip0420_245491 7.87 10.04 Chip1 T1D_2 T1D TGTGCCAGCAGCAGAAGGACCCTAAACTCTGGGGCCAACGTCCTGACTTTC CASSRRTLNSGANVLTF TRBV13*01 TRBJ2-6*01 49.0 1769.0 _CASSRRTLNSGANVLTF 9 4621 EBV-BRLF1 EBV 0.93 1264 EBV-BRLF1 138 4483 8 EBV BRLF1 YVLDHLIVV effector memory T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*02:01 B2M MHCI -2429 chip0420_793645 15.73 10.21 Chip1 T1D_1 T1D TGTGCTGTTCAAAGGGGGGAGCAACTATCAGTTAATCTGG CAVQRGga??gcNYQLIW TRAV1-2*01 TRAJ33*01 1.0 164.0 CAVQRGga??gcNYQLIW_ 1 2202 EBV-BLMF1 EBV 0.71 2531 NEG 148 2054 12 EBV BLMF1 GLCTLVAML effector T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*02:01 B2M MHCI -2430 chip0420_594378 -2.4 9.58 Chip1 T1D_1 T1D TGTGCCGTGATGGATGACATGCGCTTT CAVMDDMRF TRAV12-2*01 TRAJ43*01 17.0 931.0 TGTGCCAGCAGAAAAGGGGATTCACCCCTCCCCTTT CASRKGDSPLPF TRBV7-9*01 TRBJ1-6*01 4.0 280.0 CAVMDDMRF_CASRKGDSPLPF 1 5901 PGT-178 PGT 0.4 1480 PGT-178 129 5772 3 HomoSapiens PGT LLAGIGTVPI Naive T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*02:01 B2M MHCI -2431 chip0420_495152 5.02 10.86 Chip1 T1D_2 T1D TGTGCCAGCAGTTTACAGGGTGGGAACTATGGCTACACCTTC CASSLQGGNYGYTF TRBV6-5*01 TRBJ1-2*01 4.0 166.0 _CASSLQGGNYGYTF 4 2961 EBV-LMP2-FLY EBV 1.0 355 EBV-LMP2-FLY 136 2825 6 EBV LMP2 FLYALALLL central memory T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*02:01 B2M MHCI -2432 chip0420_449246 8.33 9.51 Chip1 T1D_1 T1D TGTGGCAGAGATGCCAAGATCATCTTT CGRDAKIIF TRAV17*01 TRAJ30*01 1.0 64.0 CGRDAKIIF_ 1 5863 CVB3-P3A CVB 0.82 77 CVB3-P3A 145 5718 8 CoxsackievirusB P3A GIIYIIYKL effector memory T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*02:01 B2M MHCI -2433 chip0420_827604 12.76 12.5 Chip1 T1D_1 T1D TGCGGCACAGAGGAACCTAGCGACTACAGGCTCAGCTTT CGTEEPSDYRLSF TRAV30*01 TRAJ20*01 1.0 66.0 TGTGCCAGCCGCACGGGACAGCTATCGAACACCGGGGAGCTGTTTTTT CASRTGQLSNTGELFF TRBV9*01 TRBJ2-2*01 6.0 323.0 CGTEEPSDYRLSF_CASRTGQLSNTGELFF 1 2601 EBV-BLMF1 EBV 0.71 2531 NEG 142 2459 11 EBV BLMF1 GLCTLVAML effector T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*02:01 B2M MHCI -2434 chip0420_398853 -1.74 9.14 Chip1 T1D_1 T1D TGTGCCAGCAGTGCTGGGGTTGGAACTGAAGCTTTCTTT CASSAGVGTEAFF TRAV14/DV4*01 TRAJ40*01 3.0 16.0 TGTGCCAGCAGTGCTGGGGTTGGAACTGAAGCTTTCTTT CASSAGVGTEAFF TRBV2*01 TRBJ1-1*01 56.0 3432.0 CASSAGVGTEAFF_CASSAGVGTEAFF 1 6299 PGT-178 PGT 0.5 1480 PGT-178 163 6136 3 HomoSapiens PGT LLAGIGTVPI Naive T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*02:01 B2M MHCI -2435 chip0420_134880 5.81 9.91 Chip1 T1D_2 T1D TGTGCCAGCAGTTTACAGGGTGGGAACTATGGCCACACCTTC CASSLQGGNYGHTF TRBV6-5*01 TRBJ1-2*01 27.0 1165.0 _CASSLQGGNYGHTF 1 2452 EBV-LMP2-FLY EBV 1.0 355 EBV-LMP2-FLY 113 2339 6 EBV LMP2 FLYALALLL central memory T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*02:01 B2M MHCI -2436 chip0420_608120 15.01 8.87 Chip1 T1D_1 T1D TGTGCCAGCAGCCAAAGCCCGGGTGGTACGCAGTATTTT CASSQSPGGTQYF TRBV14*01 TRBJ2-3*01 12.0 448.0 _CASSQSPGGTQYF 94 2736 EBV-BLMF1 EBV 0.5 2531 NEG 145 2591 12 EBV BLMF1 GLCTLVAML effector T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*02:01 B2M MHCI -2437 chip0420_301538 11.28 7.47 Chip1 T1D_2 T1D TGTGCCGTGAAGAGGAGAGCTGCAGGCAACAAGCTAACTTTT CAVKRRAAGNKLTF TRAV12-2*01 TRAJ17*01 48.0 2686.0 TGTGCCAGCACCGACACCCTCAGCCTCATTAACACCGGGGAGCTGTTTTTT CASTDTLSLINTGELFF TRBV28*01 TRBJ2-2*01 23.0 741.0 CAVKRRAAGNKLTF_CASTDTLSLINTGELFF 3 3750 EBV-BRLF1 EBV 0.95 1264 EBV-BRLF1 171 3579 10 EBV BRLF1 YVLDHLIVV effector memory T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*02:01 B2M MHCI -2438 chip0420_230696 14.11 10.96 Chip1 T1D_2 T1D TGTGTAGTGAACGGCAGGGATAGCAGCTATAAATTGATCTTC CVVNGRDSSYKLIF TRAV12-1*01 TRAJ12*01 53.0 2193.0 TGTGCCAGCAGCTCGGGACTAGTCGCCCCCGGGGAGCTGTTTTTT CASSSGLVAPGELFF TRBV2*01 TRBJ2-2*01 16.0 749.0 CVVNGRDSSYKLIF_CASSSGLVAPGELFF 98 2701 EBV-BLMF1 EBV 0.63 2531 NEG 145 2556 12 EBV BLMF1 GLCTLVAML effector T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*02:01 B2M MHCI -2439 chip0420_199551 11.33 8.07 Chip1 T1D_2 T1D TGCAGCGTTGACCAAAGGACAGGGCAAAAGAAGAACTATGGCTACACCTTC CSVDQRTGQKKNYGYTF TRBV29-1*01 TRBJ1-2*01 52.0 1967.0 _CSVDQRTGQKKNYGYTF 40 3253 EBV-BLMF1 EBV 0.86 2531 NEG 156 3097 10 EBV BLMF1 GLCTLVAML effector memory T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*02:01 B2M MHCI -2440 chip0420_525589 12.56 7.01 Chip1 T1D_2 T1D TGCGCCAGCAGGATGGGGGCCGGGGATACGCAGTATTTT CASRMGAGDTQYF TRBV10-2*01 TRBJ2-3*01 14.0 569.0 _CASRMGAGDTQYF 90 2494 EBV-BLMF1 EBV 0.83 2531 NEG 151 2343 10 EBV BLMF1 GLCTLVAML effector memory T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*02:01 B2M MHCI -2441 chip0420_856963 15.71 10.01 Chip1 T1D_1 T1D _ 6746 3075 EBV-BLMF1 EBV 0.59 2531 NEG 143 2932 12 EBV BLMF1 GLCTLVAML effector T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*02:01 B2M MHCI -2442 chip0420_755559 15.06 9.83 Chip1 T1D_2 T1D TGTGCCAGCAGCTTAGCCCCGTTGGGGCAAGAGACCCAGTACTTC CASSLAPLGQETQYF TRBV7-9*01 TRBJ2-5*01 39.0 2353.0 _CASSLAPLGQETQYF 2 2394 ZNT8-16-24 ZNT8 1.0 39 ZNT8-16-24 171 2223 12 HomoSapiens ZNT8 KMYAFTLES effector T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*02:01 B2M MHCI -2443 chip0420_560694 10.11 6.73 Chip1 T1D_2 T1D TGTGTGGTGAACGGGAAGGATAGCAGCTATAAATTGATCTTC CVVNGKDSSYKLIF TRAV12-1*01 TRAJ12*01 16.0 732.0 TGTGCCAGCAGTGGAGGGGCGGTCGCGCCGAGTGAGCAGTTCTTC CASSGGAVAPSEQFF TRBV2*01 TRBJ2-1*01 61.0 4209.0 CVVNGKDSSYKLIF_CASSGGAVAPSEQFF 12 7659 EBV-BLMF1 EBV 0.72 2531 NEG 162 7497 10 EBV BLMF1 GLCTLVAML effector memory T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*02:01 B2M MHCI -2444 chip0420_217495 9.87 9.51 Chip1 T1D_1 T1D TGTGCCAGCCGCCAACCCCCGGGTGGTACGCCGTCTTTT CASRQPPGGTPSF TRBV14*01 TRBJ2-3*01 2.0 234.0 _CASRQPPGGTPSF 1 3718 EBV-BLMF1 EBV 0.67 2531 NEG 153 3565 8 EBV BLMF1 GLCTLVAML effector memory T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*02:01 B2M MHCI -2445 chip0420_125565 10.57 10.33 Chip1 T1D_1 T1D _ 6746 3964 EBV-BLMF1 EBV 0.75 2531 NEG 148 3816 9 EBV BLMF1 GLCTLVAML effector memory T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*02:01 B2M MHCI -2446 chip0420_89142 10.17 10.83 Chip1 T1D_2 T1D TGTGCCAGCAGCTTAAACGCGGGAGAGTGGTATGGCTACACCTTC CASSLNAGEWYGYTF TRBV11-2*01 TRBJ1-2*01 5.0 274.0 _CASSLNAGEWYGYTF 3 2941 EBV-BLMF1 EBV 0.75 2531 NEG 154 2787 9 EBV BLMF1 GLCTLVAML effector memory T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*02:01 B2M MHCI -2447 chip0420_690971 11.95 10.84 Chip1 T1D_2 T1D TGTGCTTCCCTAACCCCGGGGGCTTCCAAGATAATCTTT CASLTPGASKIIF TRAV8-6*01 TRAJ3*01 1.0 109.0 TGTGCCAGCAGCTCGGGACTAGTCGCCCCCGGGGAGCTGTTTTTT CASSSGLVAPGELFF TRBV2*01 TRBJ2-2*01 87.0 5774.0 CASLTPGASKIIF_CASSSGLVAPGELFF 38 2727 EBV-BLMF1 EBV 1.0 2531 NEG 149 2578 9 EBV BLMF1 GLCTLVAML effector memory T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*02:01 B2M MHCI -2448 chip0420_623168 10.56 11.19 Chip1 T1D_2 T1D TGTGCAGAGAGTACTTCGGGAGGAAAGCTTATCTTC CAESTSGGKLIF TRAV5*01 TRAJ23*01 17.0 1162.0 TGCAGCGTGGGGACAGGGGGAACTAATGAAAAACTGTTTTTT CSVGTGGTNEKLFF TRBV29-1*01 TRBJ1-4*01 29.0 1390.0 CAESTSGGKLIF_CSVGTGGTNEKLFF 107 2977 EBV-BLMF1 EBV 0.75 2531 NEG 157 2820 9 EBV BLMF1 GLCTLVAML effector memory T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*02:01 B2M MHCI -2449 chip0420_601886 12.46 10.96 Chip1 T1D_1 T1D TCTGCTGTGGGTGATTTGGGATTGGCTTGCGCTTT SAVGDtt?GIGLRF TRAV8-4*01 TRAJ43*01 4.0 231.0 TGCAGCGTCGGCTCCAGGGGAACTAATGAAAAACTGTTTTTT CSVGSRGTNEKLFF TRBV29-1*01 TRBJ1-4*01 50.0 2926.0 SAVGDtt?GIGLRF_CSVGSRGTNEKLFF 1 2377 EBV-BLMF1 EBV 0.67 2531 NEG 135 2242 9 EBV BLMF1 GLCTLVAML effector memory T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*02:01 B2M MHCI -2450 chip0420_346721 14.37 10.02 Chip1 T1D_1 T1D TGTGCCAGCAGCCAAAGCCCGGGTGGTACGCAGTATCTT CASSQSPGGTQYL TRBV14*01 TRBJ2-3*01 5.0 227.0 _CASSQSPGGTQYL 1 3095 EBV-BLMF1 EBV 0.83 2531 NEG 141 2954 12 EBV BLMF1 GLCTLVAML effector T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*02:01 B2M MHCI -2451 chip0420_46790 8.29 10.64 Chip1 T1D_1 T1D _ 6746 5144 EBV-LMP2-FLY EBV 0.67 355 EBV-LMP2-FLY 150 4994 7 EBV LMP2 FLYALALLL transitional T cells between effector and memory populations PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*02:01 B2M MHCI -2452 chip0420_446637 6.58 12.46 Chip1 T1D_1 T1D TGTGCCAGTAGTATAAATGGGGGCCGGAGGGATGGCTACACCTTC CASSINGGRRDGYTF TRBV19*01 TRBJ1-2*01 23.0 933.0 _CASSINGGRRDGYTF 32 4589 M1 FLU 0.93 1250 NEG 151 4438 7 InfluenzaA M1 GILGFVFTL transitional T cells between effector and memory populations PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*02:01 B2M MHCI -2453 chip0420_750484 11.87 9.6 Chip1 T1D_1 T1D TGTGCCGTGGACCCATGGGGTAACCAGTTCTATTTT CAVDPWGNQFYF TRAV39*01 TRAJ49*01 1.0 92.0 TGTGCCACCCAACAGGGGAGGGACAGTCAGCCCCAGCATTTT CATQQGRDSQPQHF TRBV28*01 TRBJ1-5*01 74.0 2798.0 CAVDPWGNQFYF_CATQQGRDSQPQHF 16 3224 EBV-BLMF1 EBV 1.0 2531 NEG 127 3097 10 EBV BLMF1 GLCTLVAML effector memory T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*02:01 B2M MHCI -2454 chip0420_536725 5.35 12.61 Chip1 T1D_1 T1D _ 6746 4893 M1 FLU 0.83 1250 M1 142 4751 7 InfluenzaA M1 GILGFVFTL transitional T cells between effector and memory populations PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*02:01 B2M MHCI -2455 chip0420_174809 8.99 8.66 Chip1 T1D_1 T1D TGTGCCAGCAGCCAAAGCCCGGGTGGTACGCAGTATTTT CASSQSPGGTQYF TRBV14*01 TRBJ2-3*01 9.0 504.0 _CASSQSPGGTQYF 94 5376 EBV-BLMF1 EBV 0.8 2531 NEG 137 5239 8 EBV BLMF1 GLCTLVAML effector memory T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*02:01 B2M MHCI -2456 chip0420_771666 5.72 13.17 Chip1 T1D_1 T1D TGTGCCAGTAGTATTAGGAGCTCAGATACGCAGTATTTT CASSIRSSDTQYF TRBV19*01 TRBJ2-3*01 46.0 2674.0 _CASSIRSSDTQYF 2 4114 M1 FLU 0.8 1250 M1 151 3963 7 InfluenzaA M1 GILGFVFTL transitional T cells between effector and memory populations PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*02:01 B2M MHCI -2457 chip0420_430156 10.73 8.79 Chip1 T1D_2 T1D _ 6746 3559 EBV-BLMF1 EBV 1.0 2531 NEG 144 3415 10 EBV BLMF1 GLCTLVAML effector memory T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*02:01 B2M MHCI -2458 chip0420_749927 15.63 10.49 Chip1 T1D_1 T1D TGTGCCAGCAGTCCGGACCAAACTAGCTCCTACAATGAGCAGTTCTTC CASSPDQTSSYNEQFF TRBV27*01 TRBJ2-1*01 68.0 3127.0 _CASSPDQTSSYNEQFF 47 2202 EBV-BRLF1 EBV 0.8 1264 NEG 141 2061 12 EBV BRLF1 YVLDHLIVV effector T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*02:01 B2M MHCI -2459 chip0420_470213 -3.5 12.7 Chip1 T1D_1 T1D TGTGCCAGCAGCCAAGGCACGGGAACAGGCGAGCAGTACTTC CASSQGTGTGEQYF TRBV3-1*01 TRBJ2-7*01 17.0 1163.0 _CASSQGTGTGEQYF 1 3772 PGT-178 PGT 0.85 1480 PGT-178 128 3644 1 HomoSapiens PGT LLAGIGTVPI Naive T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*02:01 B2M MHCI -2460 chip0420_432005 12.85 7.0 Chip1 T1D_2 T1D TGTGCCAGCAGTGCCCTATTGGGGGCGCCTATGGCTACACCTTC CASSALLg?gGAYGYTF TRBV27*01 TRBJ1-2*01 10.0 561.0 _CASSALLg?gGAYGYTF 1 2692 EBV-BRLF1 EBV 0.8 1264 NEG 149 2543 10 EBV BRLF1 YVLDHLIVV effector memory T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*02:01 B2M MHCI -2461 chip0420_449277 -2.05 8.93 Chip1 T1D_2 T1D TGTGCCAGCAGTGAAGCGGGGCAGCTCGGGGGTCAGCCCCAGCATTTT CASSEAGQLGGQPQHF TRBV6-1*01 TRBJ1-5*01 6.0 91.0 _CASSEAGQLGGQPQHF 1 4676 PGT-178 PGT 0.82 1480 PGT-178 151 4525 2 HomoSapiens PGT LLAGIGTVPI Naive T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*02:01 B2M MHCI -2462 chip0420_401533 11.13 10.27 Chip1 T1D_1 T1D TGTGCCGTGAAGGACACCGACAAGCTCATCTTT CAVKDTDKLIF TRAV8-1*01 TRAJ34*01 10.0 1024.0 TGCAGTGCTGCCGACCAAACCTACAATGAGCAGTTCTTC CSAADQTYNEQFF TRBV20-1*01 TRBJ2-1*01 1.0 52.0 CAVKDTDKLIF_CSAADQTYNEQFF 1 5016 EBV-BRLF1 EBV 0.91 1264 EBV-BRLF1 134 4882 9 EBV BRLF1 YVLDHLIVV effector memory T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*02:01 B2M MHCI -2463 chip0420_20798 12.52 7.16 Chip1 T1D_2 T1D TGTGCCCGCTCTTTGCCGGGCCTGAACTATGGCTACACCTTC CARSLPGLNYGYTF TRBV19*01 TRBJ1-2*01 1.0 20.0 _CARSLPGLNYGYTF 1 3007 EBV-BRLF1 EBV 0.98 1264 EBV-BRLF1 147 2860 10 EBV BRLF1 YVLDHLIVV effector memory T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*02:01 B2M MHCI -2464 chip0420_581455 -3.24 9.77 Chip1 T1D_1 T1D _ 6746 5125 GP160-311-320 HIV 0.79 109 GP160-311-320 142 4983 2 HIV-1 GP160 RGPGRAFVTI Naive T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*02:01 B2M MHCI -2465 chip0420_373071 15.13 8.59 Chip1 T1D_1 T1D TGCAGCGTCGGCTCCAGGGGAACTAATGAAAAACTGTTTTTT CSVGSRGTNEKLFF TRBV29-1*01 TRBJ1-4*01 20.0 1265.0 _CSVGSRGTNEKLFF 283 2488 EBV-BLMF1 EBV 0.8 2531 NEG 149 2339 12 EBV BLMF1 GLCTLVAML effector T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*02:01 B2M MHCI -2466 chip0420_867946 11.24 9.8 Chip1 T1D_1 T1D _ 6746 3212 EBV-BLMF1 EBV 0.75 2531 NEG 115 3097 9 EBV BLMF1 GLCTLVAML effector memory T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*02:01 B2M MHCI -2467 chip0420_668647 -3.08 13.1 Chip1 T1D_2 T1D TGTGCCACCCTAAACAGCTGGTCCGGATACAATGAGCAGTTCTTC CATLNSWSGYNEQFF TRBV12-3*01,TRBV12-4*01 TRBJ2-1*01 20.0 2018.0 _CATLNSWSGYNEQFF 1 3471 ZNT8-173-181 ZNT8 0.55 27 NEG 143 3328 1 HomoSapiens ZNT8 IQATVMIIV Naive T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*02:01 B2M MHCI -2468 chip0420_644201 -3.63 10.75 Chip1 T1D_2 T1D TGCATCGTCAGGGGACCTCAACGAATAATGCAGGCCACTTGCTCATCTTT CIVRGPQRa?tNAGHLLIF TRAV26-1*01 TRAJ39*01 7.0 310.0 CIVRGPQRa?tNAGHLLIF_ 1 3785 GAD65-141-149 GAD65 0.9 9 GAD65-141-149 133 3652 2 HomoSapiens GAD65 LLQEYNWEL Naive T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*02:01 B2M MHCI -2469 chip0420_69029 10.94 9.93 Chip1 T1D_1 T1D TGCAGCGTCGGCTCCAGGGGAACTAATGAAAAACTGTTTTTT CSVGSRGTNEKLFF TRBV29-1*01 TRBJ1-4*01 32.0 1332.0 _CSVGSRGTNEKLFF 283 4381 EBV-BLMF1 EBV 0.91 2531 NEG 134 4247 9 EBV BLMF1 GLCTLVAML effector memory T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*02:01 B2M MHCI -2470 chip0420_572492 -2.04 11.78 Chip1 T1D_1 T1D TGTGCCAGTAGTTCCTTTCGTGGATCGGAAGCTTTCTTT CASSSFRGSEAFF TRBV19*01 TRBJ1-1*01 53.0 3920.0 _CASSSFRGSEAFF 1 4147 M1 FLU 0.81 1250 NEG 138 4009 3 InfluenzaA M1 GILGFVFTL Naive T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*02:01 B2M MHCI -2471 chip0420_97624 8.95 9.0 Chip1 T1D_1 T1D TGTGCCAGCAGCGTAGGGGGCGAAGCCTACGAGCAGTACTTC CASSVGGEAYEQYF TRBV9*01 TRBJ2-7*01 1.0 16.0 _CASSVGGEAYEQYF 2 4645 EBV-BLMF1 EBV 1.0 2531 NEG 150 4495 8 EBV BLMF1 GLCTLVAML effector memory T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*02:01 B2M MHCI -2472 chip0420_853990 14.67 9.31 Chip1 T1D_1 T1D TGCAGCGTCGGCTCCAGGGGAACTAATGAAAAACTGTTTTTT CSVGSRGTNEKLFF TRBV29-1*01 TRBJ1-4*01 65.0 2961.0 _CSVGSRGTNEKLFF 283 2500 EBV-BLMF1 EBV 0.6 2531 NEG 159 2341 12 EBV BLMF1 GLCTLVAML effector T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*02:01 B2M MHCI -2473 chip0420_799817 -2.2 9.99 Chip1 T1D_1 T1D TGTGCCAGCAGACAACCCGAGCATGAAGCTTTCTTT CASRQPEHEAFF TRBV5-6*01 TRBJ1-1*01 19.0 946.0 _CASRQPEHEAFF 1 6001 PGT-178 PGT 0.59 1480 PGT-178 132 5869 3 HomoSapiens PGT LLAGIGTVPI Naive T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*02:01 B2M MHCI -2474 chip0420_790463 5.72 13.5 Chip1 T1D_1 T1D CTGTGCCCGTAGTCTCAGGGCCGGAGAGACCCAGTACTTC LCP*SQgg??ccGETQYF TRBV19*01 TRBJ2-5*01 3.0 118.0 _LCP*SQgg??ccGETQYF 1 6013 M1 FLU 0.77 1250 M1 136 5877 7 InfluenzaA M1 GILGFVFTL transitional T cells between effector and memory populations PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*02:01 B2M MHCI -2475 chip0420_426360 -2.2 12.76 Chip1 T1D_1 T1D TGTGCCAGCAGCCAAGATCCCCGGGACTCCCCCAGGGATACGCAGTATTTT CASSQDPRDSPRDTQYF TRBV4-2*01 TRBJ2-3*01 8.0 207.0 _CASSQDPRDSPRDTQYF 1 3810 ZNT8-153-161 ZNT8 0.62 41 ZNT8-153-161 134 3676 4 HomoSapiens ZNT8 VVTGVLVYL Naive T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*02:01 B2M MHCI -2476 chip0420_267022 6.0 13.17 Chip1 T1D_1 T1D TGTGCCTGTAGTTTTAGTGGGGGCCGGAGGGATGGCTACACCTTC CACSFSGGRRDGYTF TRBV19*01 TRBJ1-2*01 14.0 472.0 _CACSFSGGRRDGYTF 1 3262 M1 FLU 0.67 1250 NEG 137 3125 7 InfluenzaA M1 GILGFVFTL transitional T cells between effector and memory populations PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*02:01 B2M MHCI -2477 chip0420_630756 8.31 8.62 Chip1 T1D_1 T1D TGTGCAGCGTATGCAGGCAACATGCTCCCCTTT CAAYAGNMLPF TRAV29/DV5*01 TRAJ39*01 6.0 531.0 TGCAGCGTCGGCTCCAGGGGAACTAATGAAAAACTGTTTTTT CSVGSRGTNEKLFF TRBV29-1*01 TRBJ1-4*01 90.0 4746.0 CAAYAGNMLPF_CSVGSRGTNEKLFF 1 3220 EBV-BLMF1 EBV 0.57 2531 NEG 146 3074 8 EBV BLMF1 GLCTLVAML effector memory T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*02:01 B2M MHCI -2478 chip0420_103232 9.08 9.29 Chip1 T1D_2 T1D TGTGTGGTGAACGGCAGGGATAGCAGCTATAAATTGATCTTC CVVNGRDSSYKLIF TRAV12-1*01 TRAJ12*01 43.0 2048.0 TGTGCCAGCAGCTCGGGACTAGTCGCCCCCGGGGAGCTGTTTTTT CASSSGLVAPGELFF TRBV2*01 TRBJ2-2*01 48.0 3421.0 CVVNGRDSSYKLIF_CASSSGLVAPGELFF 98 5883 EBV-BLMF1 EBV 1.0 2531 NEG 141 5742 8 EBV BLMF1 GLCTLVAML effector memory T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*02:01 B2M MHCI -2479 chip0420_624819 -1.21 7.75 Chip1 healthy_2 healthy TGTGCTTATACCTTAACTCAGGGCGGATCTGAAAAGCTGGTCTTT CAYTLTQGGSEKLVF TRAV38-2/DV8*01 TRAJ57*01 1.0 240.0 TGTGCCAGCAGCTTAGGAGGGGCCTCCACAGATACGCAGTATTTT CASSLGGASTDTQYF TRBV13*01 TRBJ2-3*01 1.0 17.0 CAYTLTQGGSEKLVF_CASSLGGASTDTQYF 1 5187 MART1-A28L MART1 0.89 84 MART1-A28L 141 5046 3 HomoSapiens MART1 ALGIGILTV Naive T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*02:01 B2M MHCI -2480 chip0420_388767 10.69 10.52 Chip1 T1D_1 T1D TGTGCCAGCAGTCTTTTTTCGAGTGAGCAGTTCTTC CASSLFSSEQFF TRBV28*01 TRBJ2-1*01 12.0 690.0 _CASSLFSSEQFF 4 3688 EBV-BRLF1 EBV 0.95 1264 EBV-BRLF1 129 3559 9 EBV BRLF1 YVLDHLIVV effector memory T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*02:01 B2M MHCI -2481 chip0420_704552 12.22 13.38 Chip1 T1D_1 T1D _ 6746 1723 EBV-BLMF1 EBV 0.44 2531 NEG 136 1587 11 EBV BLMF1 GLCTLVAML effector T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*02:01 B2M MHCI -2482 chip0420_216167 12.47 8.26 Chip1 T1D_1 T1D TGTGCCAGCAGTTACGGACTAGCGGGCATCAATGAGCAGTTCTTC CASSYGLAGINEQFF TRBV6-2*01,TRBV6-3*01 TRBJ2-1*01 1.0 18.0 _CASSYGLAGINEQFF 2 2767 EBV-BRLF1 EBV 0.9 1264 EBV-BRLF1 142 2625 10 EBV BRLF1 YVLDHLIVV effector memory T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*02:01 B2M MHCI -2483 chip0420_188348 14.87 8.75 Chip1 T1D_1 T1D _ 6746 2010 EBV-BLMF1 EBV 0.94 2531 EBV-BLMF1 168 1842 12 EBV BLMF1 GLCTLVAML effector T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*02:01 B2M MHCI -2484 chip0420_133446 14.18 10.75 Chip1 T1D_1 T1D TGTGCCACCCAACAGGGGCGGGACAGTCAGCCCCAGCATTTT CATQQGRDSQPQHF TRBV28*01 TRBJ1-5*01 32.0 1471.0 _CATQQGRDSQPQHF 52 2127 EBV-BLMF1 EBV 0.8 2531 NEG 135 1992 12 EBV BLMF1 GLCTLVAML effector T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*02:01 B2M MHCI -2485 chip0420_40906 13.47 8.2 Chip1 T1D_2 T1D TGTGCCGTGACGGACACCGACAAGCTCATCTTT CAVTDTDKLIF TRAV8-1*01 TRAJ34*01 54.0 4560.0 TGTGCCAGCAGTGCCCTATTGGGGGGCGCCTATGGCTACACCTTC CASSALLGGAYGYTF TRBV27*01 TRBJ1-2*01 25.0 1972.0 CAVTDTDKLIF_CASSALLGGAYGYTF 1 4148 EBV-BRLF1 EBV 0.88 1264 NEG 155 3993 10 EBV BRLF1 YVLDHLIVV effector memory T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*02:01 B2M MHCI -2486 chip0420_706050 12.27 7.5 Chip1 T1D_1 T1D TGCAGTGCTAGAGATGGGACAGGGAACGGCTACACCTTC CSARDGTGNGYTF TRBV20-1*01 TRBJ1-2*01 21.0 982.0 _CSARDGTGNGYTF 14 3588 EBV-BLMF1 EBV 1.0 2531 EBV-BLMF1 157 3431 10 EBV BLMF1 GLCTLVAML effector memory T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*02:01 B2M MHCI -2487 chip0420_639344 12.22 7.72 Chip1 T1D_2 T1D TGCGCCAGCAGCTCAGACGGAATGAACACTGAAGCTTTCTTT CASSSDGMNTEAFF TRBV10-2*01 TRBJ1-1*01 109.0 4117.0 _CASSSDGMNTEAFF 10 2983 EBV-LMP2A EBV 0.8 700 EBV-LMP2A 140 2843 10 EBV LMP2A CLGGLLTMV effector memory T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*02:01 B2M MHCI -2488 chip0420_622238 0.09 9.22 Chip1 T1D_1 T1D _ 6746 5074 IGRP-222-230 IGRP 0.88 10 IGRP-222-230 121 4953 4 HomoSapiens IGRP YLLLRVLNI Naive T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*02:01 B2M MHCI -2489 chip0420_518214 5.94 13.72 Chip1 T1D_1 T1D TGTGCCAGTAGTACAGGGTACTATGGCTACACCTTC CASSTGYYGYTF TRBV19*01 TRBJ1-2*01 13.0 695.0 _CASSTGYYGYTF 2 3535 M1 FLU 0.75 1250 M1 148 3387 7 InfluenzaA M1 GILGFVFTL transitional T cells between effector and memory populations PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*02:01 B2M MHCI -2490 chip0420_474013 13.39 10.77 Chip1 T1D_2 T1D TGTGCTGTGAGAGACGTCGGCTCCGGCACCTACAAATACATCTTT CAVRDVGSGTYKYIF TRAV3*01 TRAJ40*01 47.0 2044.0 TGTGCCAGCAGCCATGCACTAGAGAACACCGGGGAGCTGTTTTTT CASSHALENTGELFF TRBV3-1*01 TRBJ2-2*01 54.0 3458.0 CAVRDVGSGTYKYIF_CASSHALENTGELFF 1 2662 EBV-BRLF1 EBV 0.94 1264 EBV-BRLF1 158 2504 9 EBV BRLF1 YVLDHLIVV effector memory T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*02:01 B2M MHCI -2491 chip0420_75138 14.72 8.31 Chip1 T1D_2 T1D TGTGTGGTGAACGGCAGGGATAGCAGCTATAAATTGATCTTC CVVNGRDSSYKLIF TRAV12-1*01 TRAJ12*01 45.0 2080.0 TGTGCCAGCAGCTCGGGACTAGTCGCCCCCGGGGAGCTGTTTTTT CASSSGLVAPGELFF TRBV2*01 TRBJ2-2*01 23.0 1132.0 CVVNGRDSSYKLIF_CASSSGLVAPGELFF 98 3043 EBV-BLMF1 EBV 0.5 2531 NEG 154 2889 12 EBV BLMF1 GLCTLVAML effector T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*02:01 B2M MHCI -2492 chip0420_696360 5.96 12.2 Chip1 T1D_1 T1D _ 6746 5459 M1 FLU 0.77 1250 M1 153 5306 7 InfluenzaA M1 GILGFVFTL transitional T cells between effector and memory populations PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*02:01 B2M MHCI -2493 chip0420_665173 15.49 9.9 Chip1 T1D_1 T1D TGTGCCAGCAGTCCGGACCAAACTAGCTCCTACAATGAGCAGTTCTTC CASSPDQTSSYNEQFF TRBV27*01 TRBJ2-1*01 43.0 1973.0 _CASSPDQTSSYNEQFF 47 2871 EBV-BRLF1 EBV 0.89 1264 EBV-BRLF1 166 2705 12 EBV BRLF1 YVLDHLIVV effector T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*02:01 B2M MHCI -2494 chip0420_871042 10.95 6.89 Chip1 T1D_2 T1D TGTGTGGTGAACGGCAGGGATAGCCGCTATAAATTGATCTTC CVVNGRDSRYKLIF TRAV12-1*01 TRAJ12*01 1.0 11.0 TGTGCCAGCAGCTCGGGACTAGTCGCCCCCGGGGAGCTGTTTTTT CASSSGLVAPGELFF TRBV2*01 TRBJ2-2*01 46.0 2354.0 CVVNGRDSRYKLIF_CASSSGLVAPGELFF 1 4794 EBV-BLMF1 EBV 0.6 2531 NEG 161 4633 10 EBV BLMF1 GLCTLVAML effector memory T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*02:01 B2M MHCI -2495 chip0420_143973 10.45 9.05 Chip1 T1D_2 T1D TGCGCCAGCAGGATGGGGGCCGGGGATACGCAGTATTTT CASRMGAGDTQYF TRBV10-2*01 TRBJ2-3*01 18.0 696.0 _CASRMGAGDTQYF 90 4038 EBV-BLMF1 EBV 0.5 2531 NEG 169 3869 10 EBV BLMF1 GLCTLVAML effector memory T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*02:01 B2M MHCI -2496 chip0420_132893 15.82 12.05 Chip1 T1D_1 T1D TGTGCCAGCAGCCCAGTTAGCGGGTCAACCTACGAGCAGTACTTC CASSPVSGSTYEQYF TRBV3-1*01 TRBJ2-7*01 13.0 654.0 _CASSPVSGSTYEQYF 80 1525 EBV-BLMF1 EBV 1.0 2531 NEG 124 1401 12 EBV BLMF1 GLCTLVAML effector T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*02:01 B2M MHCI -2497 chip0420_55026 15.93 10.93 Chip1 T1D_1 T1D TGTGCCAGCAGTGAGGCATTTCTAGCGGACAATGAGCAGTTCTTC CASSEAFLADNEQFF TRBV6-4*01 TRBJ2-1*01 1.0 29.0 _CASSEAFLADNEQFF 6 1890 EBV-BRLF1 EBV 0.6 1264 NEG 142 1748 12 EBV BRLF1 YVLDHLIVV effector T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*02:01 B2M MHCI -2498 chip0420_399071 10.84 9.56 Chip1 T1D_2 T1D TGTGCCAGCAGCTTAGAGTCGGGACTACTTCACAATGAGCAGTTCTTC CASSLESGLLHNEQFF TRBV11-3*01 TRBJ2-1*01 5.0 278.0 _CASSLESGLLHNEQFF 2 4033 EBV-BLMF1 EBV 0.75 2531 NEG 178 3855 9 EBV BLMF1 GLCTLVAML effector memory T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*02:01 B2M MHCI -2499 chip0420_273704 8.45 8.8 Chip1 T1D_2 T1D TGCAGCGTGGGGACAGGGGGAACTAATGAAAAACTGTTTTTT CSVGTGGTNEKLFF TRBV29-1*01 TRBJ1-4*01 113.0 5919.0 _CSVGTGGTNEKLFF 638 6476 EBV-BLMF1 EBV 0.6 2531 NEG 158 6318 8 EBV BLMF1 GLCTLVAML effector memory T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*02:01 B2M MHCI -2500 chip0420_196823 9.22 13.91 Chip1 T1D_1 T1D TGTGCAATGAGAGAGGGAGTCGTGGAATATGGAAACAAACTGGTCTTT CAMREGVVEYGNKLVF TRAV14/DV4*01 TRAJ47*01 59.0 1949.0 TGTGCCATTTGTTTGGAGCCGGGGAGCTGTTTTTT CAICLga?AGELFF TRBV19*01 TRBJ2-2*01 6.0 415.0 CAMREGVVEYGNKLVF_CAICLga?AGELFF 1 1544 M1 FLU 1.0 1250 NEG 131 1413 11 InfluenzaA M1 GILGFVFTL effector T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*02:01 B2M MHCI -2501 chip0420_509054 6.79 11.59 Chip1 T1D_3 T1D TGCAGTGCCGACCCGTACCAGGATCACTATGGCTACACCTTC CSADPYQDHYGYTF TRBV20-1*01 TRBJ1-2*01 1.0 32.0 _CSADPYQDHYGYTF 1 4865 NP44-52 FLU 0.87 474 NP44-52 139 4726 7 InfluenzaA NP CTELKLSDY transitional T cells between effector and memory populations PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*01:01 B2M MHCI -2502 chip0420_500895 13.21 6.85 Chip1 T1D_1 T1D TGTGCCAGCAGCACGGGACAGCTATCGAACACCGGGGAGCTGTTTTTT CASSTGQLSNTGELFF TRBV9*01 TRBJ2-2*01 32.0 1606.0 _CASSTGQLSNTGELFF 82 3040 EBV-BLMF1 EBV 0.79 2531 NEG 169 2871 10 EBV BLMF1 GLCTLVAML effector memory T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*02:01 B2M MHCI -2503 chip0420_525666 13.99 9.3 Chip1 T1D_2 T1D TGTGTGGTGAACGGGAAGGATAGCAGCTATAAATTGATCTTC CVVNGKDSSYKLIF TRAV12-1*01 TRAJ12*01 70.0 1998.0 TGTGCCAGCAGTGGAGGGGCGGTCGCGCCGAGTGAGCAGTTCTTC CASSGGAVAPSEQFF TRBV2*01 TRBJ2-1*01 39.0 1860.0 CVVNGKDSSYKLIF_CASSGGAVAPSEQFF 12 3413 EBV-BLMF1 EBV 0.88 2531 NEG 162 3251 12 EBV BLMF1 GLCTLVAML effector T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*02:01 B2M MHCI -2504 chip0420_840156 10.15 9.89 Chip1 T1D_1 T1D TGCGGCCCAGCGGAACCTAACGACTACAAGCTCAGCTTT CGPAEPNDYKLSF TRAV30*01 TRAJ20*01 15.0 1455.0 TGTGCCAGCAGCACGGGACAGCTATCGAACACCGGGGAGCTGTTTTTT CASSTGQLSNTGELFF TRBV9*01 TRBJ2-2*01 21.0 992.0 CGPAEPNDYKLSF_CASSTGQLSNTGELFF 8 4383 EBV-BLMF1 EBV 0.6 2531 NEG 142 4241 9 EBV BLMF1 GLCTLVAML effector memory T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*02:01 B2M MHCI -2505 chip0420_359081 14.92 10.24 Chip1 T1D_1 T1D TGCGGCCCCGCGGAACCTAACGACTACAAGCTCAGCTTT CGPAEPNDYKLSF TRAV30*01 TRAJ20*01 37.0 2159.0 TGTGCCAGCAGCACGGGACAGCTATCGAACACCGGGGAGCTGTTTTTT CASSTGQLSNTGELFF TRBV9*01 TRBJ2-2*01 2.0 106.0 CGPAEPNDYKLSF_CASSTGQLSNTGELFF 8 3133 EBV-BLMF1 EBV 0.71 2531 NEG 148 2985 12 EBV BLMF1 GLCTLVAML effector T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*02:01 B2M MHCI -2506 chip0420_547471 8.32 9.9 Chip1 T1D_2 T1D _ 6746 3890 EBV-BLMF1 EBV 0.75 2531 NEG 160 3730 8 EBV BLMF1 GLCTLVAML effector memory T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*02:01 B2M MHCI -2507 chip0420_403678 15.75 10.38 Chip1 T1D_1 T1D TGCAGCGTCGGCTCCAGGGGAACTAATGAAAAACTGTTTTTT CSVGSRGTNEKLFF TRBV29-1*01 TRBJ1-4*01 115.0 8571.0 _CSVGSRGTNEKLFF 283 2581 EBV-BLMF1 EBV 0.5 2531 NEG 131 2450 12 EBV BLMF1 GLCTLVAML effector T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*02:01 B2M MHCI -2508 chip0420_304098 7.85 10.83 Chip1 T1D_1 T1D TGTGCTCTCCCTTCTGGTGGCTACAATAAGCTGATTTTT CALPSGGYNKLIF TRAV16*01 TRAJ4*01 29.0 2051.0 CALPSGGYNKLIF_ 2 6365 EBV-LMP2-FLY EBV 1.0 355 EBV-LMP2-FLY 144 6221 7 EBV LMP2 FLYALALLL transitional T cells between effector and memory populations PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*02:01 B2M MHCI -2509 chip0420_655829 9.92 9.7 Chip1 T1D_1 T1D TGTGCTCTCTATAACACCGCCAAGCTCATCTTT CALYNTAKLIF TRAV9-2*01 TRAJ34*01 19.0 2015.0 CALYNTAKLIF_ 1 2794 EBV-BLMF1 EBV 0.77 2531 EBV-BLMF1 153 2641 9 EBV BLMF1 GLCTLVAML effector memory T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*02:01 B2M MHCI -2510 chip0420_618072 9.54 9.08 Chip1 T1D_3 T1D _ 6746 4950 BZLF1-190-197 EBV 0.57 2156 BZLF1-190-197 125 4825 8 EBV BZLF1 RAKFKQLL effector memory T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-B*08:01 B2M MHCI -2511 chip0420_840687 5.53 11.86 Chip1 T1D_1 T1D TGTGCCAGCTCACCAATTGGGATCGGGACGCTTCCCTTT CASSPIGIGTLPF TRBV18*01 TRBJ1-3*01 6.0 311.0 _CASSPIGIGTLPF 1 6240 M1 FLU 0.78 1250 M1 159 6081 7 InfluenzaA M1 GILGFVFTL transitional T cells between effector and memory populations PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*02:01 B2M MHCI -2512 chip0420_665577 6.01 12.43 Chip1 T1D_1 T1D _ 6746 4357 M1 FLU 0.87 1250 M1 140 4217 7 InfluenzaA M1 GILGFVFTL transitional T cells between effector and memory populations PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*02:01 B2M MHCI -2513 chip0420_110101 9.15 9.28 Chip1 T1D_1 T1D TGTGCCAGCAGCCCAGTTAGCGGGTCAACCTACGAGCAGTACTTC CASSPVSGSTYEQYF TRBV3-1*01 TRBJ2-7*01 4.0 145.0 _CASSPVSGSTYEQYF 80 4679 EBV-BLMF1 EBV 0.86 2531 EBV-BLMF1 144 4535 8 EBV BLMF1 GLCTLVAML effector memory T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*02:01 B2M MHCI -2514 chip0420_53665 -3.67 11.65 Chip1 T1D_1 T1D TGTGCCACCAGTGAGAAAATACAGGGGAGCGAGACCTACGAGCAGTACTTC CATSEKIQGSETYEQYF TRBV24-1*01 TRBJ2-7*01 17.0 518.0 _CATSEKIQGSETYEQYF 1 3822 PGT-178 PGT 0.64 1480 PGT-178 119 3703 1 HomoSapiens PGT LLAGIGTVPI Naive T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*02:01 B2M MHCI -2515 chip0420_609810 9.34 11.13 Chip1 T1D_2 T1D TGCAGCGTGGGGACAGGGGGAACTAATGAAAAACTGTTTTTT CSVGTGGTNEKLFF TRBV29-1*01 TRBJ1-4*01 215.0 9905.0 _CSVGTGGTNEKLFF 638 3049 EBV-BLMF1 EBV 1.0 2531 NEG 148 2901 9 EBV BLMF1 GLCTLVAML effector memory T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*02:01 B2M MHCI -2516 chip0420_554137 9.84 7.41 Chip1 T1D_2 T1D _ 6746 4626 EBV-BLMF1 EBV 0.82 2531 NEG 142 4484 10 EBV BLMF1 GLCTLVAML effector memory T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*02:01 B2M MHCI -2517 chip0420_819956 14.29 11.59 Chip1 T1D_2 T1D TGCGCCAGCAGTCAATCGAGAGGGTCGCTCTGGGATACGCAGTATTTT CASSQSRGSLWDTQYF TRBV4-3*01 TRBJ2-3*01 1.0 15.0 _CASSQSRGSLWDTQYF 21 1831 EBV-BRLF1 EBV 0.86 1264 EBV-BRLF1 170 1661 12 EBV BRLF1 YVLDHLIVV effector T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*02:01 B2M MHCI -2518 chip0420_799071 14.29 10.66 Chip1 T1D_2 T1D TGCAGCGTGGGGACAGGGGGAACTAATGAAAAACTGTTTTTT CSVGTGGTNEKLFF TRBV29-1*01 TRBJ1-4*01 88.0 3566.0 _CSVGTGGTNEKLFF 638 3251 EBV-BLMF1 EBV 0.83 2531 NEG 148 3103 12 EBV BLMF1 GLCTLVAML effector T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*02:01 B2M MHCI -2519 chip0420_771835 4.96 12.12 Chip1 healthy_2 healthy _ 6746 2775 EBV-LMP1-1 EBV 0.62 237 NEG 137 2638 6 EBV LMP1 YLLEMLWRL central memory T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*02:01 B2M MHCI -2520 chip0420_806031 0.09 3.67 Chip1 T1D_1 T1D TGCATCGTCGGTGGTACTAGCTCTGGAAAGCTGACATTT CIVGGTSSGKLTF TRAV26-1*01 TRAJ52*01 19.0 784.0 CIVGGTSSGKLTF_ 1 4267 HCV-K1S HCV 0.43 10 NEG 117 4150 5 HCV POL SLVALGINAV natural killer-like T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*02:01 B2M MHCI -2521 chip0420_634970 8.52 10.05 Chip1 T1D_2 T1D TGTGTCTTGAAGGATACTCACCAGCTCATTTTT CVLKDTHQLIF TRAV8-1*01 TRAJ34*01 5.0 329.0 TGTGCCAGCAGCGACTTGGCGAACACCGGGGAGCTGTTTTTT CASSDLANTGELFF TRBV27*01 TRBJ2-2*01 127.0 7412.0 CVLKDTHQLIF_CASSDLANTGELFF 1 3963 EBV-BRLF1 EBV 0.87 1264 EBV-BRLF1 157 3806 8 EBV BRLF1 YVLDHLIVV effector memory T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*02:01 B2M MHCI -2522 chip0420_797266 15.84 11.23 Chip1 T1D_1 T1D _ 6746 2080 EBV-BLMF1 EBV 0.88 2531 NEG 143 1937 12 EBV BLMF1 GLCTLVAML effector T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*02:01 B2M MHCI -2523 chip0420_771242 10.57 9.1 Chip1 T1D_1 T1D TGCAGCGTCGGCTCCAGGGGAACTAATGAAAAACTGTTTTTT CSVGSRGTNEKLFF TRBV29-1*01 TRBJ1-4*01 18.0 419.0 _CSVGSRGTNEKLFF 283 4205 EBV-BLMF1 EBV 0.6 2531 NEG 145 4060 10 EBV BLMF1 GLCTLVAML effector memory T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*02:01 B2M MHCI -2524 chip0420_691182 0.21 4.5 Chip1 T1D_1 T1D _ 6746 7274 HCV-K1S HCV 0.43 10 NEG 132 7142 5 HCV POL SLVALGINAV natural killer-like T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*02:01 B2M MHCI -2525 chip0420_678661 9.34 10.09 Chip1 T1D_2 T1D TGCAGCGTGGGGACAGGGGGAACTAATGAAAAACTGTTTTTT CSVGTGGTNEKLFF TRBV29-1*01 TRBJ1-4*01 162.0 8541.0 _CSVGTGGTNEKLFF 638 4185 EBV-BLMF1 EBV 0.65 2531 NEG 153 4032 8 EBV BLMF1 GLCTLVAML effector memory T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*02:01 B2M MHCI -2526 chip0420_637120 11.81 13.58 Chip1 T1D_2 T1D TGCAGCGTGGGGACAGGGGGAACTAATGAAAAACTGTTTTTT CSVGTGGTNEKLFF TRBV29-1*01 TRBJ1-4*01 2.0 96.0 _CSVGTGGTNEKLFF 638 1510 EBV-BLMF1 EBV 0.73 2531 NEG 136 1374 11 EBV BLMF1 GLCTLVAML effector T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*02:01 B2M MHCI -2527 chip0420_443508 -0.29 8.91 Chip1 T1D_1 T1D TGTGTTTCGGACTCGAACACCGGGGAGCTGTTTTTT CVSDSNTGELFF TRBV7-9*01 TRBJ2-2*01 24.0 1873.0 _CVSDSNTGELFF 1 7836 ZNT8-153-161 ZNT8 0.9 41 ZNT8-153-161 154 7682 4 HomoSapiens ZNT8 VVTGVLVYL Naive T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*02:01 B2M MHCI -2528 chip0420_302138 11.43 7.48 Chip1 T1D_2 T1D TGTGCCGTGAAGGACACCGACAAGCTCATCTTT CAVKDTDKLIF TRAV8-1*01 TRAJ34*01 1.0 229.0 TGTGCCTGGAGTGTACAGCTAGCGGGAGTAGACGAGCAGTACTTC CAWSVQLAGVDEQYF TRBV30*01 TRBJ2-7*01 28.0 1679.0 CAVKDTDKLIF_CAWSVQLAGVDEQYF 9 4013 EBV-BRLF1 EBV 0.92 1264 NEG 154 3859 10 EBV BRLF1 YVLDHLIVV effector memory T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*02:01 B2M MHCI -2529 chip0420_631141 14.17 9.25 Chip1 T1D_1 T1D TGCGGCACCGCGGAACCTAACGACTACAAGCTCAGCTTT CGTAEPNDYKLSF TRAV30*01 TRAJ20*01 21.0 1424.0 CGTAEPNDYKLSF_ 3 2622 EBV-BLMF1 EBV 0.71 2531 NEG 166 2456 12 EBV BLMF1 GLCTLVAML effector T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*02:01 B2M MHCI -2530 chip0420_860579 5.98 12.89 Chip1 T1D_1 T1D TGTGCCGTGGACGAAAACCCCCTGAATTATGGAGGAAGCCAAGGAAATCTCATCTCT CAVDENPLNYGGSQGNLIS TRAV39*01 TRAJ42*01 8.0 571.0 TGTGCCAGTAGTAGGACTAGCACAGATACGCAGTATTTT CASSRTSTDTQYF TRBV19*01 TRBJ2-3*01 41.0 2193.0 CAVDENPLNYGGSQGNLIS_CASSRTSTDTQYF 1 5276 M1 FLU 0.9 1250 M1 141 5135 7 InfluenzaA M1 GILGFVFTL transitional T cells between effector and memory populations PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*02:01 B2M MHCI -2531 chip0420_581014 14.78 10.82 Chip1 T1D_2 T1D TGTGCCTTAGGAGGACTGACCTTT CALGGLTF TRAV8-1*01 TRAJ22*01 21.0 2178.0 CALGGLTF_ 6 2645 EBV-BRLF1 EBV 0.95 1264 EBV-BRLF1 155 2490 12 EBV BRLF1 YVLDHLIVV effector T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*02:01 B2M MHCI -2532 chip0420_808469 -2.17 9.38 Chip1 T1D_1 T1D TGTGCCGTGAACGACGGGGGTTACCAGAAAAGTTACCTT CAVNDGGYQKSYL TRAV12-2*01 TRAJ13*01 13.0 1267.0 TGTGCCAGCAGCTCGACAGCTTACAATGAGCAGTTCTTC CASSSTAYNEQFF TRBV2*01 TRBJ2-1*01 78.0 6179.0 CAVNDGGYQKSYL_CASSSTAYNEQFF 1 6480 IGRP-152-160-MLI IGRP 0.93 6 NEG 125 6355 3 HomoSapiens IGRP FLWSVFMLI Naive T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*02:01 B2M MHCI -2533 chip0420_799926 15.42 12.51 Chip1 T1D_2 T1D TGCAGCGTGGGGACAGGGGGAACTAATGAAAAACTGTTTTTT CSVGTGGTNEKLFF TRBV29-1*01 TRBJ1-4*01 64.0 2587.0 _CSVGTGGTNEKLFF 638 1986 EBV-BLMF1 EBV 0.47 2531 NEG 150 1836 12 EBV BLMF1 GLCTLVAML effector T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*02:01 B2M MHCI -2534 chip0420_209033 8.41 12.98 Chip1 T1D_2 T1D TGCGCCAGCAGGATGGGGGCCGGGGATACGCAGTATTTT CASRMGAGDTQYF TRBV10-2*01 TRBJ2-3*01 54.0 2487.0 _CASRMGAGDTQYF 90 2352 EBV-BLMF1 EBV 1.0 2531 NEG 153 2199 7 EBV BLMF1 GLCTLVAML transitional T cells between effector and memory populations PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*02:01 B2M MHCI -2535 chip0420_217404 -1.11 7.82 Chip1 T1D_1 T1D _ 6746 7292 PGT-178 PGT 0.91 1480 PGT-178 127 7165 3 HomoSapiens PGT LLAGIGTVPI Naive T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*02:01 B2M MHCI -2536 chip0420_601147 14.18 12.95 Chip1 T1D_2 T1D TGCAGCGTGGGGACAGGGGGAACTAATGAAAAACTGTTTTTT CSVGTGGTNEKLFF TRBV29-1*01 TRBJ1-4*01 18.0 1012.0 _CSVGTGGTNEKLFF 638 1725 EBV-BLMF1 EBV 0.44 2531 EBV-BLMF1 152 1573 12 EBV BLMF1 GLCTLVAML effector T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*02:01 B2M MHCI -2537 chip0420_54420 8.84 8.36 Chip1 T1D_2 T1D TGTGCCAGCAGCTTAGGGCAGGGGGCAGTCTACGAGCAGTACTTC CASSLGQGAVYEQYF TRBV11-2*01 TRBJ2-7*01 11.0 507.0 _CASSLGQGAVYEQYF 2 4817 PGT-178 PGT 0.57 1480 PGT-178 139 4678 8 HomoSapiens PGT LLAGIGTVPI effector memory T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*02:01 B2M MHCI -2538 chip0420_20537 9.67 9.61 Chip1 T1D_2 T1D TGTGCCAGCAGCTCGGGACTAGTCGCCCCCGGGGAGCTGTTTTTT CASSSGLVAPGELFF TRBV2*01 TRBJ2-2*01 30.0 2026.0 _CASSSGLVAPGELFF 133 3600 EBV-BLMF1 EBV 0.44 2531 NEG 145 3455 8 EBV BLMF1 GLCTLVAML effector memory T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*02:01 B2M MHCI -2539 chip0420_769298 6.14 12.29 Chip1 T1D_1 T1D _ 6746 6084 M1 FLU 0.69 1250 NEG 133 5951 7 InfluenzaA M1 GILGFVFTL transitional T cells between effector and memory populations PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*02:01 B2M MHCI -2540 chip0420_532928 6.16 10.2 Chip1 T1D_2 T1D _ 6746 5749 EBV-LMP2A EBV 0.95 700 EBV-LMP2A 136 5613 6 EBV LMP2A CLGGLLTMV central memory T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*02:01 B2M MHCI -2541 chip0420_105917 -0.54 9.55 Chip1 T1D_1 T1D TGTGCCAGCAGCTTAGGGGCGGGAGTTAGCACAGATACGCAGTATTTT CASSLGAGVSTDTQYF TRBV7-3*01 TRBJ2-3*01 43.0 2058.0 _CASSLGAGVSTDTQYF 1 3991 EBV-BRLF1 EBV 0.74 1264 EBV-BRLF1 130 3861 4 EBV BRLF1 YVLDHLIVV Naive T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*02:01 B2M MHCI -2542 chip0420_515819 10.23 11.18 Chip1 T1D_1 T1D _ 6746 4178 HCVNS4B-1807-1816 HCV 0.95 74 HCVNS4B-1807-1816 146 4032 9 HCV NS4B LLFNILGGWV effector memory T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*02:01 B2M MHCI -2543 chip0420_308162 -0.17 7.81 Chip1 T1D_2 T1D TGTGCCGAGGGAACTGGTTTCTGCAAGGCAACTGCCCTT CAEGTGFCKATAL TRAV12-2*01 TRAJ22*01 3.0 173.0 CAEGTGFCKATAL_ 1 7896 GP160-311-320 HIV 0.93 109 NEG 144 7752 4 HIV-1 GP160 RGPGRAFVTI Naive T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*02:01 B2M MHCI -2544 chip0420_282109 12.94 10.58 Chip1 T1D_2 T1D TGTGTGGTGAACGGCAGGGATAGCAGCTATAAATTGATCTTC CVVNGRDSSYKLIF TRAV12-1*01 TRAJ12*01 43.0 2051.0 TGTGCCAGCAGCTCGGGACTAGTCGCCCCCGGGGAGCTGTTTTTT CASSSGLVAPGELFF TRBV2*01 TRBJ2-2*01 23.0 1481.0 CVVNGRDSSYKLIF_CASSSGLVAPGELFF 98 4281 EBV-BLMF1 EBV 0.62 2531 NEG 160 4121 9 EBV BLMF1 GLCTLVAML effector memory T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*02:01 B2M MHCI -2545 chip0420_811279 11.38 10.86 Chip1 T1D_1 T1D TGCAGCGTCGGCTCCAGGGGAACTAATGAAAAACTGTTTTTT CSVGSRGTNEKLFF TRBV29-1*01 TRBJ1-4*01 77.0 5091.0 _CSVGSRGTNEKLFF 283 3098 EBV-BLMF1 EBV 0.75 2531 NEG 149 2949 9 EBV BLMF1 GLCTLVAML effector memory T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*02:01 B2M MHCI -2546 chip0420_636215 6.08 13.61 Chip1 T1D_1 T1D TGTGCAGCGAATTATGGAGGAAGCCAAGGAAATCTCATCTTT CAANYGGSQGNLIF TRAV25*01 TRAJ42*01 63.0 2739.0 TGTGCCAGCAGTTTTCTCGGGCCAGGTCTCAACGAGCAGTACTTC CASSFLGPGLNEQYF TRBV28*01 TRBJ2-7*01 1.0 29.0 CAANYGGSQGNLIF_CASSFLGPGLNEQYF 1 3613 M1 FLU 0.78 1250 M1 140 3473 7 InfluenzaA M1 GILGFVFTL transitional T cells between effector and memory populations PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*02:01 B2M MHCI -2547 chip0420_657637 10.42 11.59 Chip1 T1D_2 T1D TGCAGCGTGGGGACAGGGGGAACTAATGAAAAACTGTTTTTT CSVGTGGTNEKLFF TRBV29-1*01 TRBJ1-4*01 140.0 6137.0 _CSVGTGGTNEKLFF 638 3122 EBV-BLMF1 EBV 0.5 2531 NEG 140 2982 9 EBV BLMF1 GLCTLVAML effector memory T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*02:01 B2M MHCI -2548 chip0420_348470 6.93 12.98 Chip1 T1D_1 T1D TGTGCCAGTAGTATAAATGGGGGCCGGAGGGATGGCTACACCTTC CASSINGGRRDGYTF TRBV19*01 TRBJ1-2*01 39.0 2012.0 _CASSINGGRRDGYTF 32 3849 M1 FLU 0.56 1250 NEG 143 3706 7 InfluenzaA M1 GILGFVFTL transitional T cells between effector and memory populations PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*02:01 B2M MHCI -2549 chip0420_637092 -2.82 8.55 Chip1 T1D_2 T1D TGTGCCAGCAGCGACACAGATTACAATGAGCAGTTCTTC CASSDTDYNEQFF TRBV12-3*01,TRBV12-4*01 TRBJ2-1*01 19.0 1102.0 _CASSDTDYNEQFF 1 5123 HCVNS4B-1807-1816 HCV 0.94 74 HCVNS4B-1807-1816 140 4983 3 HCV NS4B LLFNILGGWV Naive T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*02:01 B2M MHCI -2550 chip0420_344609 13.5 12.95 Chip1 T1D_2 T1D TGTGCTTCCCTCCCCCCGGGGGCTTCCCCGGTAGGCTTT CASLPPGASPVGF TRAV8-6*01 TRAJ3*01 20.0 1936.0 TGTGCCAGCAGCTCGGGACTAGTCGCCCCCGGGGAGCTGTTTTTT CASSSGLVAPGELFF TRBV2*01 TRBJ2-2*01 22.0 869.0 CASLPPGASPVGF_CASSSGLVAPGELFF 1 2295 EBV-BLMF1 EBV 0.44 2531 NEG 127 2168 10 EBV BLMF1 GLCTLVAML effector memory T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*02:01 B2M MHCI -2551 chip0420_169416 10.11 9.8 Chip1 T1D_2 T1D _ 6746 4000 EBV-BLMF1 EBV 1.0 2531 NEG 134 3866 9 EBV BLMF1 GLCTLVAML effector memory T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*02:01 B2M MHCI -2552 chip0420_167768 8.25 13.63 Chip1 T1D_1 T1D TGTGCCAGCTCACGGACAGGGTTGAACACTGAAGCTTTCTTT CASSRTGLNTEAFF TRBV18*01 TRBJ1-1*01 28.0 1783.0 _CASSRTGLNTEAFF 3 3090 M1 FLU 0.79 1250 NEG 133 2957 7 InfluenzaA M1 GILGFVFTL transitional T cells between effector and memory populations PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*02:01 B2M MHCI -2553 chip0420_848605 -3.26 10.71 Chip1 T1D_1 T1D TGTGCAATGAGCGGATCTAACTTTGGAAATGAGAAATTAACCTTT CAMSGSNFGNEKLTF TRAV12-3*01 TRAJ48*01 7.0 116.0 TGTGCCAGCTCACCACCGCAGACCTCTCAGGAGACCCAGTACTTC CASSPPQTSQETQYF TRBV18*01 TRBJ2-5*01 13.0 705.0 CAMSGSNFGNEKLTF_CASSPPQTSQETQYF 1 4390 PGT-178 PGT 0.75 1480 PGT-178 144 4246 3 HomoSapiens PGT LLAGIGTVPI Naive T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*02:01 B2M MHCI -2554 chip0420_487030 8.53 13.82 Chip1 T1D_1 T1D _ 6746 2157 M1 FLU 1.0 1250 NEG 129 2028 11 InfluenzaA M1 GILGFVFTL effector T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*02:01 B2M MHCI -2555 chip0420_367049 10.24 9.93 Chip1 T1D_1 T1D TGTGCTCTCTATAACACCGACAAGCTCATCTTT CALYNTDKLIF TRAV9-2*01 TRAJ34*01 24.0 2128.0 CALYNTDKLIF_ 10 4156 EBV-BLMF1 EBV 1.0 2531 NEG 147 4009 9 EBV BLMF1 GLCTLVAML effector memory T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*02:01 B2M MHCI -2556 chip0420_752994 13.16 10.75 Chip1 T1D_1 T1D TGTGCCAGCAGCCAAAGCCCGGGTGGTACGCAGTATTTT CASSQSPGGTQYF TRBV14*01 TRBJ2-3*01 16.0 446.0 _CASSQSPGGTQYF 94 2493 EBV-BLMF1 EBV 0.83 2531 NEG 140 2353 9 EBV BLMF1 GLCTLVAML effector memory T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*02:01 B2M MHCI -2557 chip0420_211310 12.21 13.07 Chip1 T1D_1 T1D _ 6746 1982 EBV-BLMF1 EBV 1.0 2531 NEG 125 1857 11 EBV BLMF1 GLCTLVAML effector T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*02:01 B2M MHCI -2558 chip0420_724233 15.77 11.77 Chip1 T1D_1 T1D _ 6746 1875 EBV-BLMF1 EBV 0.53 2531 NEG 136 1739 12 EBV BLMF1 GLCTLVAML effector T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*02:01 B2M MHCI -2559 chip0420_536701 5.92 12.45 Chip1 T1D_1 T1D TGTGTTGTGAGGGGGTCTCTAGCCACACAGGCAAACTAATCTTT CVVRGSLg?cHTGKLIF TRAV8-2*01 TRAJ37*01 61.0 2198.0 CVVRGSLg?cHTGKLIF_ 1 6520 M1 FLU 0.44 1250 NEG 145 6375 7 InfluenzaA M1 GILGFVFTL transitional T cells between effector and memory populations PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*02:01 B2M MHCI -2560 chip0420_453633 9.79 9.97 Chip1 T1D_1 T1D TGTGTGGTGAACGGGGAGGATAGCAGCTATAAATTGATCTTC CVVNGEDSSYKLIF TRAV12-1*01 TRAJ12*01 16.0 626.0 TGTGCCAGTAGTCCCCACTTGGGTGCGGCGGCCGCGCAGTACTTC CASSPHLGAAAAQYF TRBV19*01 TRBJ2-7*01 3.0 228.0 CVVNGEDSSYKLIF_CASSPHLGAAAAQYF 1 3512 EBV-BRLF1 EBV 0.8 1264 NEG 146 3366 9 EBV BRLF1 YVLDHLIVV effector memory T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*02:01 B2M MHCI -2561 chip0420_312193 -2.9 13.58 Chip1 T1D_1 T1D _ 6746 3849 PGT-178 PGT 0.48 1480 NEG 135 3714 1 HomoSapiens PGT LLAGIGTVPI Naive T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*02:01 B2M MHCI -2562 chip0420_192923 12.15 6.11 Chip1 T1D_1 T1D TGTGCTACGGAAGGGGATTCAGGATACAGCACCCTCACCTTT CATEGDSGYSTLTF TRAV17*01 TRAJ11*01 2.0 211.0 CATEGDSGYSTLTF_ 12 4350 EBV-LMP2-FLY EBV 1.0 355 EBV-LMP2-FLY 144 4206 6 EBV LMP2 FLYALALLL central memory T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*02:01 B2M MHCI -2563 chip0420_783994 13.62 13.12 Chip1 T1D_1 T1D _ 6746 1183 EBV-BRLF1 EBV 0.91 1264 EBV-BRLF1 128 1055 11 EBV BRLF1 YVLDHLIVV effector T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*02:01 B2M MHCI -2564 chip0420_550996 10.72 11.91 Chip1 T1D_2 T1D TGCAGCGTGGGGACAGGGGGAACTAATGAAAAACTGTTTTTT CSVGTGGTNEKLFF TRBV29-1*01 TRBJ1-4*01 32.0 2022.0 _CSVGTGGTNEKLFF 638 2399 EBV-BLMF1 EBV 0.62 2531 NEG 130 2269 9 EBV BLMF1 GLCTLVAML effector memory T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*02:01 B2M MHCI -2565 chip0420_407313 10.39 7.56 Chip1 T1D_2 T1D TGCGCCAGCAATGAGGACGGTATGAACACTGAAGCTTTCTTT CASNEDGMNTEAFF TRBV10-2*01 TRBJ1-1*01 21.0 971.0 _CASNEDGMNTEAFF 1 5380 EBV-LMP2A EBV 0.92 700 EBV-LMP2A 163 5217 10 EBV LMP2A CLGGLLTMV effector memory T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*02:01 B2M MHCI -2566 chip0420_135991 10.47 9.79 Chip1 T1D_1 T1D TGTGCCAGCAGTTCCGGAGGGAACGTGGATACGCAGTATTTT CASSSGGNVDTQYF TRBV7-3*01 TRBJ2-3*01 51.0 3344.0 _CASSSGGNVDTQYF 47 3400 EBV-BLMF1 EBV 0.71 2531 NEG 140 3260 9 EBV BLMF1 GLCTLVAML effector memory T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*02:01 B2M MHCI -2567 chip0420_10674 -2.71 11.31 Chip1 T1D_1 T1D TGTGCCAGCAGCCCGTCGACAGCTAATGAGCAGTTCTTC CASSPSTANEQFF TRBV14*01 TRBJ2-1*01 15.0 862.0 _CASSPSTANEQFF 1 4730 PGT-178 PGT 0.58 1480 PGT-178 137 4593 3 HomoSapiens PGT LLAGIGTVPI Naive T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*02:01 B2M MHCI -2568 chip0420_545889 6.83 13.45 Chip1 T1D_1 T1D TGTGCTGTGAGTGATCGGGATGGAGGCTTCAAAACTATCTTT CAVSDRDGGFKTIF TRAV8-4*01 TRAJ9*01 4.0 407.0 CAVSDRDGGFKTIF_ 6 3930 M1 FLU 0.81 1250 M1 143 3787 7 InfluenzaA M1 GILGFVFTL transitional T cells between effector and memory populations PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*02:01 B2M MHCI -2569 chip0420_394184 5.98 13.82 Chip1 T1D_1 T1D TGTGCCAGTAGTATAAATGGGGGCCGGAGGGATGGCTACACCTTC CASSINGGRRDGYTF TRBV19*01 TRBJ1-2*01 57.0 2567.0 _CASSINGGRRDGYTF 32 4367 M1 FLU 0.67 1250 NEG 155 4212 7 InfluenzaA M1 GILGFVFTL transitional T cells between effector and memory populations PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*02:01 B2M MHCI -2570 chip0420_784471 6.34 13.65 Chip1 T1D_1 T1D TGTGCCAGTAGTGTCAGGGCAGGAGAGACCCAGTACTTC CASSVRAGETQYF TRBV19*01 TRBJ2-5*01 30.0 1728.0 _CASSVRAGETQYF 23 3629 M1 FLU 0.72 1250 M1 146 3483 7 InfluenzaA M1 GILGFVFTL transitional T cells between effector and memory populations PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*02:01 B2M MHCI -2571 chip0420_18365 15.85 10.59 Chip1 T1D_1 T1D TGTGCCAGCAGTTCGGGACAGGTACTTCCCAATGAGCAGTTCTTC CASSSGQVLPNEQFF TRBV2*01 TRBJ2-1*01 61.0 4587.0 _CASSSGQVLPNEQFF 61 3993 EBV-BLMF1 EBV 0.86 2531 NEG 142 3851 12 EBV BLMF1 GLCTLVAML effector T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*02:01 B2M MHCI -2572 chip0420_826419 -3.05 9.07 Chip1 T1D_1 T1D _ 6746 5998 GP160-311-320 HIV 0.9 109 NEG 119 5879 2 HIV-1 GP160 RGPGRAFVTI Naive T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*02:01 B2M MHCI -2573 chip0420_781356 -2.71 8.52 Chip1 T1D_1 T1D TGTGCCAGCAGTTTAACGCCGCTCTATGGCTACACCTTC CASSLTPLYGYTF TRBV12-3*01,TRBV12-4*01 TRBJ1-2*01 12.0 756.0 _CASSLTPLYGYTF 1 7232 IGRP-152-160-WLI IGRP 0.88 27 IGRP-152-160-WLI 132 7100 2 HomoSapiens IGRP FLWSVFWLI Naive T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*02:01 B2M MHCI -2574 chip0420_504346 -1.28 7.24 Chip1 T1D_1 T1D TGTGCAGGCTTGCCCGAGTCCGGGTATGCACTCAACTTC CAGLPESGYALNF TRAV27*01 TRAJ41*01 41.0 2138.0 TGCAGTGCTAGGGCAGGTCTAACCACTGAAGCTTTCTTT CSARAGLTTEAFF TRBV20-1*01 TRBJ1-1*01 40.0 2006.0 CAGLPESGYALNF_CSARAGLTTEAFF 1 7074 PGT-178 PGT 0.86 1480 PGT-178 128 6946 3 HomoSapiens PGT LLAGIGTVPI Naive T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*02:01 B2M MHCI -2575 chip0420_155739 6.04 12.63 Chip1 T1D_1 T1D _ 6746 5601 M1 FLU 0.81 1250 M1 137 5464 7 InfluenzaA M1 GILGFVFTL transitional T cells between effector and memory populations PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*02:01 B2M MHCI -2576 chip0420_778906 9.42 11.08 Chip1 T1D_2 T1D TGCAGCGTGGGGACAGGGGGAACTAATGAAAAACTGTTTTTT CSVGTGGTNEKLFF TRBV29-1*01 TRBJ1-4*01 42.0 2369.0 _CSVGTGGTNEKLFF 638 3327 EBV-BLMF1 EBV 0.5 2531 NEG 176 3151 9 EBV BLMF1 GLCTLVAML effector memory T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*02:01 B2M MHCI -2577 chip0420_282747 15.56 10.45 Chip1 T1D_2 T1D TGTGCCAGCAGCTCGGGACTAGTCGCCCCCGGGGAGCTGTTTTTT CASSSGLVAPGELFF TRBV2*01 TRBJ2-2*01 13.0 830.0 _CASSSGLVAPGELFF 133 3023 EBV-BLMF1 EBV 0.6 2531 NEG 139 2884 12 EBV BLMF1 GLCTLVAML effector T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*02:01 B2M MHCI -2578 chip0420_627524 12.13 7.01 Chip1 T1D_1 T1D TGCAGTGCTAGAGACGGGACAGGGAATGGCTACACCTTC CSARDGTGNGYTF TRBV20-1*01 TRBJ1-2*01 1.0 31.0 _CSARDGTGNGYTF 14 2997 EBV-BLMF1 EBV 0.65 2531 EBV-BLMF1 149 2848 10 EBV BLMF1 GLCTLVAML effector memory T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*02:01 B2M MHCI -2579 chip0420_464460 -1.1 8.94 Chip1 T1D_1 T1D TGTGCTCTCCATAACACCGACAAGCTCATCTTT CALHNTDKLIF TRAV9-2*01 TRAJ34*01 1.0 12.0 CALHNTDKLIF_ 1 5917 PGT-178 PGT 0.59 1480 PGT-178 126 5791 4 HomoSapiens PGT LLAGIGTVPI Naive T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*02:01 B2M MHCI -2580 chip0420_327097 14.86 10.59 Chip1 T1D_1 T1D _ 6746 3443 EBV-BLMF1 EBV 0.6 2531 NEG 130 3313 12 EBV BLMF1 GLCTLVAML effector T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*02:01 B2M MHCI -2581 chip0420_725879 -3.51 12.13 Chip1 T1D_1 T1D TGTGCCAGCAGCCCACCGGGGGGTGAAGCTTTCTTT CASSPPGGEAFF TRBV7-9*01 TRBJ1-1*01 24.0 1162.0 _CASSPPGGEAFF 1 3821 INS-6-16 INS 0.86 20 INS-6-16 151 3670 1 HomoSapiens INS RLLPLLALLAL Naive T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*02:01 B2M MHCI -2582 chip0420_243324 -2.31 15.66 Chip1 T1D_1 T1D _ 6746 1529 PGT-178 PGT 0.46 1480 PGT-178 156 1373 1 HomoSapiens PGT LLAGIGTVPI Naive T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*02:01 B2M MHCI -2583 chip0420_25849 9.72 10.96 Chip1 T1D_2 T1D TGCAGCGTGGGGACAGGGGGAACTAATGAAAAACTGTTTTTT CSVGTGGTNEKLFF TRBV29-1*01 TRBJ1-4*01 158.0 7734.0 _CSVGTGGTNEKLFF 638 3083 EBV-BLMF1 EBV 0.75 2531 NEG 133 2950 9 EBV BLMF1 GLCTLVAML effector memory T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*02:01 B2M MHCI -2584 chip0420_742012 11.42 10.32 Chip1 T1D_2 T1D TGCGCCAGCAGAGCGGGAGCCGGGGATACGCAGTATTTT CASRAGAGDTQYF TRBV10-2*01 TRBJ2-3*01 21.0 1066.0 _CASRAGAGDTQYF 59 2536 EBV-BLMF1 EBV 1.0 2531 NEG 147 2389 9 EBV BLMF1 GLCTLVAML effector memory T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*02:01 B2M MHCI -2585 chip0420_99817 15.48 10.66 Chip1 T1D_2 T1D TGTGCAGAGAGTACTTCGGGAGGAAAGCTTATCTTC CAESTSGGKLIF TRAV5*01 TRAJ23*01 31.0 2081.0 TGCAGCGTGGGGACAGGGGGAACTAATGAAAAACTGTTTTTT CSVGTGGTNEKLFF TRBV29-1*01 TRBJ1-4*01 52.0 2731.0 CAESTSGGKLIF_CSVGTGGTNEKLFF 107 2553 EBV-BLMF1 EBV 0.67 2531 NEG 135 2418 12 EBV BLMF1 GLCTLVAML effector T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*02:01 B2M MHCI -2586 chip0420_23001 11.45 11.05 Chip1 T1D_1 T1D TGTGCCAGCAGGGGCCTGACAGGGGGCGGGAGTGAAGCTTTCTTT CASRGLTGGGSEAFF TRBV28*01 TRBJ1-1*01 17.0 582.0 _CASRGLTGGGSEAFF 2 2690 EBV-BRLF1 EBV 0.67 1264 NEG 126 2564 9 EBV BRLF1 YVLDHLIVV effector memory T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*02:01 B2M MHCI -2587 chip0420_557944 11.34 10.85 Chip1 T1D_2 T1D TGTGGCACTCAAGAGAATGACAGCTGGGGGCAATTGCAGTTT CGTQENDSWGQLQF TRAV30*01 TRAJ24*01 8.0 335.0 CGTQENDSWGQLQF_ 1 2628 EBV-BRLF1 EBV 0.93 1264 NEG 134 2494 9 EBV BRLF1 YVLDHLIVV effector memory T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*02:01 B2M MHCI -2588 chip0420_68617 15.8 10.21 Chip1 T1D_1 T1D TGCGGCACAGAGGAACCTAACGACTACAAGCTCAGCTTT CGTEEPNDYKLSF TRAV30*01 TRAJ20*01 51.0 3606.0 TGTGCCAGCAGCACGGGACAGCTATCGAACACCGGGGAGCTGTTTTTT CASSTGQLSNTGELFF TRBV9*01 TRBJ2-2*01 11.0 677.0 CGTEEPNDYKLSF_CASSTGQLSNTGELFF 18 5585 EBV-BLMF1 EBV 0.48 2531 NEG 138 5447 12 EBV BLMF1 GLCTLVAML effector T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*02:01 B2M MHCI -2589 chip0420_761331 11.24 9.7 Chip1 T1D_2 T1D TGTGCAGAGGGAAGCCAAGGAAATCTCATCTTT CAEGSQGNLIF TRAV5*01 TRAJ42*01 1.0 10.0 TGCAGCGTTGGGGGCAGCTTCTATGGCTACACCTTC CSVGGSFYGYTF TRBV29-1*01 TRBJ1-2*01 94.0 8373.0 CAEGSQGNLIF_CSVGGSFYGYTF 2 3322 EBV-BLMF1 EBV 1.0 2531 NEG 142 3180 9 EBV BLMF1 GLCTLVAML effector memory T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*02:01 B2M MHCI -2590 chip0420_127354 12.99 8.19 Chip1 T1D_1 T1D TGCAGCGTCGGCTCCAGGGGAACTAATGAAAAACTGTTTTTT CSVGSRGTNEKLFF TRBV29-1*01 TRBJ1-4*01 110.0 6845.0 _CSVGSRGTNEKLFF 283 3322 EBV-BLMF1 EBV 0.78 2531 NEG 141 3181 10 EBV BLMF1 GLCTLVAML effector memory T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*02:01 B2M MHCI -2591 chip0420_566769 10.73 11.68 Chip1 T1D_1 T1D TGTGCCGTAATGAATAATAATGCAGGCAACATGCTCACCTTT CAVMNNNAGNMLTF TRAV35*01 TRAJ39*01 32.0 2045.0 CAVMNNNAGNMLTF_ 1 2744 EBV-BLMF1 EBV 0.62 2531 NEG 153 2591 9 EBV BLMF1 GLCTLVAML effector memory T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*02:01 B2M MHCI -2592 chip0420_132769 10.87 11.64 Chip1 T1D_1 T1D TGGGCCAGCAGCCCAGTTAGCGGGTCAACCTACGAGCAGTACTTC WASSPVSGSTYEQYF TRBV3-1*01 TRBJ2-7*01 17.0 713.0 _WASSPVSGSTYEQYF 1 2427 EBV-BLMF1 EBV 1.0 2531 EBV-BLMF1 128 2299 9 EBV BLMF1 GLCTLVAML effector memory T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*02:01 B2M MHCI -2593 chip0420_641996 9.1 10.8 Chip1 T1D_1 T1D _ 6746 5753 EBV-BLMF1 EBV 0.71 2531 EBV-BLMF1 128 5625 9 EBV BLMF1 GLCTLVAML effector memory T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*02:01 B2M MHCI -2594 chip0420_446987 -2.92 8.71 Chip1 healthy_1 healthy _ 6746 6066 POL-132-140 HIV 0.8 37 NEG 133 5933 2 HIV-1 POL LVGPTPVNI Naive T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*02:01 B2M MHCI -2595 chip0420_873841 8.53 11.2 Chip1 T1D_2 T1D TGTGCCAGCAGCAGAAGGACCCTAAACTCTGGGGCCAACGTCCTGACTTTC CASSRRTLNSGANVLTF TRBV13*01 TRBJ2-6*01 57.0 2470.0 _CASSRRTLNSGANVLTF 9 4822 EBV-BRLF1 EBV 0.87 1264 EBV-BRLF1 136 4686 7 EBV BRLF1 YVLDHLIVV transitional T cells between effector and memory populations PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*02:01 B2M MHCI -2596 chip0420_493832 -3.25 12.36 Chip1 T1D_1 T1D _ 6746 3702 PGT-178 PGT 0.59 1480 PGT-178 120 3582 1 HomoSapiens PGT LLAGIGTVPI Naive T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*02:01 B2M MHCI -2597 chip0420_221080 5.67 13.18 Chip1 T1D_1 T1D TGTGCCAGTAGTATAATCGATAGGACTCTTGGAACAGATACGCAGTATTTT CASSIIDRTLGTDTQYF TRBV19*01 TRBJ2-3*01 42.0 1461.0 _CASSIIDRTLGTDTQYF 3 4399 M1 FLU 0.81 1250 M1 135 4264 7 InfluenzaA M1 GILGFVFTL transitional T cells between effector and memory populations PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*02:01 B2M MHCI -2598 chip0420_132505 6.07 13.1 Chip1 T1D_1 T1D TGTGCCAGTAGTATCGGTCTTCCTGGCTACACCTTC CASSIGLPGYTF TRBV19*01 TRBJ1-2*01 15.0 992.0 _CASSIGLPGYTF 1 4952 M1 FLU 0.67 1250 NEG 142 4810 7 InfluenzaA M1 GILGFVFTL transitional T cells between effector and memory populations PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*02:01 B2M MHCI -2599 chip0420_403120 10.9 10.68 Chip1 T1D_1 T1D TGTGCCGTGGACCCATGGGGTAACCAGTTCTATTTT CAVDPWGNQFYF TRAV39*01 TRAJ49*01 30.0 2263.0 TGTGCCACCCAACAGGGGAGGGACAGTCAGCCCCAGCATTTT CATQQGRDSQPQHF TRBV28*01 TRBJ1-5*01 95.0 4995.0 CAVDPWGNQFYF_CATQQGRDSQPQHF 16 4092 EBV-BLMF1 EBV 0.86 2531 NEG 151 3941 9 EBV BLMF1 GLCTLVAML effector memory T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*02:01 B2M MHCI -2600 chip0420_340445 6.43 12.72 Chip1 T1D_1 T1D TGTGCCAGTAGCTTGTATAGCAATCAGCCCCAGCATCTT CASSLYSNQPQHL TRBV19*01 TRBJ1-5*01 3.0 199.0 _CASSLYSNQPQHL 1 5370 M1 FLU 0.82 1250 M1 142 5228 7 InfluenzaA M1 GILGFVFTL transitional T cells between effector and memory populations PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*02:01 B2M MHCI -2601 chip0420_753758 9.36 8.12 Chip1 T1D_2 T1D _ 6746 2659 EBV-BLMF1 EBV 0.6 2531 NEG 159 2500 8 EBV BLMF1 GLCTLVAML effector memory T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*02:01 B2M MHCI -2602 chip0420_156026 14.41 10.32 Chip1 T1D_1 T1D TGTGCCGTGAAGGGGTATGACAAGATCATCTTT CAVKGYDKIIF TRAV8-1*01 TRAJ30*01 32.0 2258.0 CAVKGYDKIIF_ 3 2259 EBV-BRLF1 EBV 1.0 1264 NEG 143 2116 12 EBV BRLF1 YVLDHLIVV effector T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*02:01 B2M MHCI -2603 chip0420_745855 12.25 7.67 Chip1 T1D_2 T1D TGCAGCGTTGACCAAAGGACAGGGCAAAAGAAGAACTATGGCTACACCTTC CSVDQRTGQKKNYGYTF TRBV29-1*01 TRBJ1-2*01 152.0 7236.0 _CSVDQRTGQKKNYGYTF 40 2497 EBV-BLMF1 EBV 0.5 2531 NEG 168 2329 10 EBV BLMF1 GLCTLVAML effector memory T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*02:01 B2M MHCI -2604 chip0420_667275 13.74 10.22 Chip1 T1D_1 T1D TGTGCCGTGAAGGACACCGACAAGCTCATCTTT CAVKDTDKLIF TRAV8-1*01 TRAJ34*01 38.0 4153.0 CAVKDTDKLIF_ 56 3448 EBV-BRLF1 EBV 0.78 1264 NEG 146 3302 12 EBV BRLF1 YVLDHLIVV effector T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*02:01 B2M MHCI -2605 chip0420_521284 7.38 7.59 Chip1 T1D_2 T1D _ 6746 3451 HCV-K1Y HCV 0.44 15 NEG 175 3276 8 HCV POL YLVALGINAV effector memory T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*02:01 B2M MHCI -2606 chip0420_332648 13.62 8.25 Chip1 T1D_1 T1D TGTGCCAGCAGTCCGGACCAAACTAGCTCCTACAATGAGCAGTTCTTC CASSPDQTSSYNEQFF TRBV27*01 TRBJ2-1*01 31.0 2078.0 _CASSPDQTSSYNEQFF 47 3120 EBV-BRLF1 EBV 0.9 1264 EBV-BRLF1 147 2973 10 EBV BRLF1 YVLDHLIVV effector memory T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*02:01 B2M MHCI -2607 chip0420_760138 -3.09 9.21 Chip1 T1D_1 T1D _ 6746 4832 CVB3-P3A CVB 0.6 77 NEG 135 4697 2 CoxsackievirusB P3A GIIYIIYKL Naive T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*02:01 B2M MHCI -2608 chip0420_621031 14.02 8.1 Chip1 T1D_2 T1D TGCAGCGTTGGGGGCAGCTTCTATGGCTACACCTTC CSVGGSFYGYTF TRBV29-1*01 TRBJ1-2*01 62.0 5947.0 _CSVGGSFYGYTF 42 1972 EBV-BLMF1 EBV 1.0 2531 NEG 149 1823 10 EBV BLMF1 GLCTLVAML effector memory T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*02:01 B2M MHCI -2609 chip0420_126326 13.73 9.66 Chip1 T1D_1 T1D TGTGCCAGCAGCCAAAGCCCGGGTGGTACGCAGTATTTT CASSQSPGGTQYF TRBV14*01 TRBJ2-3*01 2.0 162.0 _CASSQSPGGTQYF 94 3846 EBV-BLMF1 EBV 0.86 2531 NEG 155 3691 8 EBV BLMF1 GLCTLVAML effector memory T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*02:01 B2M MHCI -2610 chip0420_647317 11.9 8.58 Chip1 T1D_2 T1D TGTGCAGAGAGTACTTCGGGAGGAACGCTTATCTTC CAESTSGGTLIF TRAV5*01 TRAJ23*01 26.0 2077.0 TGCAGCGTGGGGACAGGGGGAACTAATGAAAAACTGTTTTTT CSVGTGGTNEKLFF TRBV29-1*01 TRBJ1-4*01 110.0 5750.0 CAESTSGGTLIF_CSVGTGGTNEKLFF 4 2506 EBV-BLMF1 EBV 0.67 2531 NEG 154 2352 10 EBV BLMF1 GLCTLVAML effector memory T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*02:01 B2M MHCI -2611 chip0420_556117 11.01 9.14 Chip1 T1D_2 T1D TGTGCCAGCAGCTCGGGACTAGTCGCCCCCGGGGAGCTGTTTTTT CASSSGLVAPGELFF TRBV2*01 TRBJ2-2*01 40.0 1969.0 _CASSSGLVAPGELFF 133 3346 EBV-BLMF1 EBV 0.75 2531 NEG 135 3211 10 EBV BLMF1 GLCTLVAML effector memory T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*02:01 B2M MHCI -2612 chip0420_304899 6.32 12.97 Chip1 T1D_1 T1D TGTGCAGCGCCCTCTCAGGGCGGCTCTGCAAAGCTGGTCTTT CAAPSQGGSAKLVF TRAV29/DV5*01 TRAJ57*01 1.0 10.0 CAAPSQGGSAKLVF_ 1 4248 M1 FLU 0.95 1250 M1 146 4102 7 InfluenzaA M1 GILGFVFTL transitional T cells between effector and memory populations PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*02:01 B2M MHCI -2613 chip0420_695678 11.1 8.26 Chip1 T1D_2 T1D TGTGCCAGCAGCTCGGGACTAGTCGCCCCCGGGGAGCTGTTTTTT CASSSGLVAPGELFF TRBV2*01 TRBJ2-2*01 28.0 1706.0 _CASSSGLVAPGELFF 133 4047 EBV-BLMF1 EBV 0.56 2531 NEG 157 3890 10 EBV BLMF1 GLCTLVAML effector memory T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*02:01 B2M MHCI -2614 chip0420_90379 9.44 8.87 Chip1 T1D_1 T1D _ 6746 5758 EBV-BLMF1 EBV 0.98 2531 EBV-BLMF1 138 5620 8 EBV BLMF1 GLCTLVAML effector memory T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*02:01 B2M MHCI -2615 chip0420_90492 5.32 9.27 Chip1 T1D_2 T1D _ 6746 2879 M1 FLU 0.78 1250 M1 138 2741 6 InfluenzaA M1 GILGFVFTL central memory T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*02:01 B2M MHCI -2616 chip0420_830424 -3.38 12.53 Chip1 T1D_1 T1D TGTGCCAGCAGTTACAATGAGCAGTTCTTC CASSYNEQFF TRBV2*01 TRBJ2-1*01 1.0 175.0 _CASSYNEQFF 1 4227 CVB3-P3A CVB 0.54 77 NEG 132 4095 1 CoxsackievirusB P3A GIIYIIYKL Naive T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*02:01 B2M MHCI -2617 chip0420_569135 9.18 9.17 Chip1 T1D_1 T1D _ 6746 5353 EBV-BLMF1 EBV 0.74 2531 NEG 151 5202 8 EBV BLMF1 GLCTLVAML effector memory T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*02:01 B2M MHCI -2618 chip0420_774824 9.83 10.8 Chip1 T1D_2 T1D TGCAGCTCGCAGGAGGGCGGCTATGGCTACACCTTC CSSQEGGYGYTF TRBV29-1*01 TRBJ1-2*01 27.0 2062.0 _CSSQEGGYGYTF 11 4417 EBV-BLMF1 EBV 1.0 2531 NEG 153 4264 9 EBV BLMF1 GLCTLVAML effector memory T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*02:01 B2M MHCI -2619 chip0420_732754 5.6 11.03 Chip1 T1D_2 T1D _ 6746 4982 EBV-LMP2-FLY EBV 0.96 355 EBV-LMP2-FLY 143 4839 6 EBV LMP2 FLYALALLL central memory T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*02:01 B2M MHCI -2620 chip0420_804889 13.89 10.88 Chip1 T1D_2 T1D _ 6746 2746 EBV-BLMF1 EBV 0.58 2531 NEG 145 2601 12 EBV BLMF1 GLCTLVAML effector T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*02:01 B2M MHCI -2621 chip0420_712637 6.04 13.42 Chip1 T1D_1 T1D TGTGCCAGTAGCTTTGATAGCTCTCAGCCCCGGCTTTTT CASSFDSSQPRLF TRBV19*01 TRBJ1-5*01 14.0 719.0 _CASSFDSSQPRLF 1 4364 M1 FLU 0.69 1250 M1 138 4226 7 InfluenzaA M1 GILGFVFTL transitional T cells between effector and memory populations PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*02:01 B2M MHCI -2622 chip0420_142722 9.85 10.43 Chip1 T1D_1 T1D TGTGCCAGCAGCCCGGGTCAGCTATCGAACACCGGGGAGCTGTTGTTT CASSPGQLSNTGELLF TRBV9*01 TRBJ2-2*01 4.0 83.0 _CASSPGQLSNTGELLF 1 3716 EBV-BLMF1 EBV 0.83 2531 NEG 141 3575 9 EBV BLMF1 GLCTLVAML effector memory T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*02:01 B2M MHCI -2623 chip0420_17519 -3.66 10.31 Chip1 T1D_2 T1D TGTGCTCTGAGTGAGGTTACATCAGGAGGAAGCTACATACCTACATTT CALSEVTSGGSYIPTF TRAV19*01 TRAJ6*01 114.0 5278.0 CALSEVTSGGSYIPTF_ 1 5195 PTPRN-797-805 PTPRN 0.94 12 PTPRN-797-805 134 5061 2 HomoSapiens PTPRN MVWESGCTV Naive T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*02:01 B2M MHCI -2624 chip0420_558098 13.43 8.62 Chip1 T1D_2 T1D TGCGCCAGCAGTCATCAGGCCTCCGAGCAGTACTTC CASSHQASEQYF TRBV10-1*01 TRBJ2-7*01 1.0 58.0 _CASSHQASEQYF 4 2600 EBV-BRLF1 EBV 0.94 1264 EBV-BRLF1 134 2466 10 EBV BRLF1 YVLDHLIVV effector memory T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*02:01 B2M MHCI -2625 chip0420_146057 12.78 7.26 Chip1 T1D_2 T1D CTGTGCCAGCAGCGCCTCGACTAGCGGGAGTGTGGAGTCCCAGTACTTC LCQQRLD*??cGSVESQYF TRBV3-1*01 TRBJ2-5*01 16.0 2046.0 _LCQQRLD*??cGSVESQYF 1 2625 EBV-BRLF1 EBV 0.83 1264 EBV-BRLF1 140 2485 10 EBV BRLF1 YVLDHLIVV effector memory T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*02:01 B2M MHCI -2626 chip0420_165460 9.97 10.45 Chip1 T1D_1 T1D _ 6746 2482 EBV-BLMF1 EBV 1.0 2531 NEG 157 2325 9 EBV BLMF1 GLCTLVAML effector memory T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*02:01 B2M MHCI -2627 chip0420_178623 9.41 8.39 Chip1 T1D_1 T1D TGTGTGGTGAACGGACGGGATAGCAGCTATAAATTGATCTTC CVVNGRDSSYKLIF TRAV12-1*01 TRAJ12*01 28.0 1488.0 TGTGCCAGCAGTGACGGTCGGGTCCACCCGGGGACCCAGTACTTC CASSDGRVHPGTQYF TRBV2*01 TRBJ2-5*01 13.0 868.0 CVVNGRDSSYKLIF_CASSDGRVHPGTQYF 14 5593 EBV-BLMF1 EBV 0.5 2531 NEG 153 5440 8 EBV BLMF1 GLCTLVAML effector memory T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*02:01 B2M MHCI -2628 chip0420_76278 11.63 8.56 Chip1 T1D_2 T1D TGTGCCAGCAGCTCGGGACTAGTCGCCCCCGGGGAGCTGTTTTTT CASSSGLVAPGELFF TRBV2*01 TRBJ2-2*01 86.0 5457.0 _CASSSGLVAPGELFF 133 3276 EBV-BLMF1 EBV 0.62 2531 NEG 142 3134 10 EBV BLMF1 GLCTLVAML effector memory T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*02:01 B2M MHCI -2629 chip0420_411592 -3.83 9.09 Chip1 T1D_1 T1D _ 6746 5899 PGT-178 PGT 0.71 1480 PGT-178 138 5761 2 HomoSapiens PGT LLAGIGTVPI Naive T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*02:01 B2M MHCI -2630 chip0420_240555 10.76 7.61 Chip1 T1D_1 T1D TGTGCCGGCGGTGTGCGGGGAGGTCTCTATGGCTCCCCCTTC CAGGVRGGLYGSPF TRBV6-1*01 TRBJ1-2*01 2.0 10.0 _CAGGVRGGLYGSPF 1 6889 EBV-LMP2-FLY EBV 0.92 355 EBV-LMP2-FLY 131 6758 6 EBV LMP2 FLYALALLL central memory T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*02:01 B2M MHCI -2631 chip0420_168939 8.79 9.5 Chip1 T1D_2 T1D TGTGCCAGCAGCCCCTCGACTAGCGGGAGTGGGGAGACCCAGTACTTC CASSPSTSGSGETQYF TRBV3-1*01 TRBJ2-5*01 28.0 1552.0 _CASSPSTSGSGETQYF 18 3491 EBV-BRLF1 EBV 0.84 1264 EBV-BRLF1 141 3350 8 EBV BRLF1 YVLDHLIVV effector memory T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*02:01 B2M MHCI -2632 chip0420_687633 -1.13 9.79 Chip1 T1D_2 T1D TGTGCCGTGAACAGTAGAGGTAACCAGTTCTATTTT CAVNSRGNQFYF TRAV12-2*01 TRAJ49*01 12.0 872.0 TGTGCCAGCAGCTTAGTGACTAGTGTAGATACGCAGTATTTT CASSLVTSVDTQYF TRBV11-3*01 TRBJ2-3*01 9.0 322.0 CAVNSRGNQFYF_CASSLVTSVDTQYF 1 7974 PGT-178 PGT 0.49 1480 PGT-178 128 7846 3 HomoSapiens PGT LLAGIGTVPI Naive T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*02:01 B2M MHCI -2633 chip0420_604983 13.27 7.73 Chip1 T1D_2 T1D TGTGCCAGCAGCTCGGGACTAGTCGCCCCCAGGGAGCTGTTTTTT CASSSGLVAPRELFF TRBV2*01 TRBJ2-2*01 32.0 1910.0 _CASSSGLVAPRELFF 1 2941 EBV-BLMF1 EBV 0.75 2531 NEG 125 2816 10 EBV BLMF1 GLCTLVAML effector memory T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*02:01 B2M MHCI -2634 chip0420_224038 -0.84 6.56 Chip1 T1D_1 T1D TGTGCCGTGCGGGGAAGCTACATACCTACATTT CAVRGSYIPTF TRAV12-2*01 TRAJ6*01 22.0 2122.0 TGTGCCAGCAGTCCTCAAGGGACTAGCGGCACAGATACGCAGTATTTT CASSPQGTSGTDTQYF TRBV3-1*01 TRBJ2-3*01 38.0 2247.0 CAVRGSYIPTF_CASSPQGTSGTDTQYF 1 7643 PGT-178 PGT 0.93 1480 PGT-178 137 7506 3 HomoSapiens PGT LLAGIGTVPI Naive T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*02:01 B2M MHCI -2635 chip0420_573610 5.03 10.39 Chip1 T1D_3 T1D _ 6746 3980 PB1-590-599 FLU 0.6 37 NEG 150 3830 6 InfluenzaA PB1 LVSDGGPNLY central memory T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*01:01 B2M MHCI -2636 chip0420_472176 6.09 9.16 Chip1 T1D_2 T1D TGCGCCAGCAGCTCAGACGGAATGAACACTGAAGCTTTCTTT CASSSDGMNTEAFF TRBV10-2*01 TRBJ1-1*01 3.0 92.0 _CASSSDGMNTEAFF 10 8358 EBV-LMP2A EBV 0.96 700 EBV-LMP2A 164 8194 6 EBV LMP2A CLGGLLTMV central memory T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*02:01 B2M MHCI -2637 chip0420_447815 5.8 11.53 Chip1 T1D_1 T1D _ 6746 5128 M1 FLU 0.74 1250 M1 127 5001 6 InfluenzaA M1 GILGFVFTL central memory T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*02:01 B2M MHCI -2638 chip0420_446836 14.98 12.85 Chip1 T1D_1 T1D TGTGCCAGCAGCACGGGACAGCTATCGAACACCGGGGAGCTGTTTTTT CASSTGQLSNTGELFF TRBV9*01 TRBJ2-2*01 2.0 11.0 _CASSTGQLSNTGELFF 82 2041 EBV-BLMF1 EBV 0.56 2531 NEG 128 1913 12 EBV BLMF1 GLCTLVAML effector T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*02:01 B2M MHCI -2639 chip0420_133064 -1.67 9.95 Chip1 T1D_1 T1D _ 6746 5434 PGT-178 PGT 0.78 1480 PGT-178 135 5299 3 HomoSapiens PGT LLAGIGTVPI Naive T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*02:01 B2M MHCI -2640 chip0420_678994 12.06 13.6 Chip1 T1D_2 T1D _ 6746 1212 EBV-BRLF1 EBV 0.84 1264 EBV-BRLF1 139 1073 11 EBV BRLF1 YVLDHLIVV effector T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*02:01 B2M MHCI -2641 chip0420_240804 13.2 10.87 Chip1 T1D_1 T1D _ 6746 2310 EBV-BLMF1 EBV 0.56 2531 EBV-BLMF1 143 2167 9 EBV BLMF1 GLCTLVAML effector memory T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*02:01 B2M MHCI -2642 chip0420_754995 9.41 8.5 Chip1 T1D_2 T1D TGTGCTCTGAGTGAGATGGATAGCAGCTATAAATTGATCTTC CALSEMDSSYKLIF TRAV19*01 TRAJ12*01 1.0 48.0 TGCAGCGTGGGGACAGGGGGAACTAATGAAAAACTGTTTTTT CSVGTGGTNEKLFF TRBV29-1*01 TRBJ1-4*01 177.0 6836.0 CALSEMDSSYKLIF_CSVGTGGTNEKLFF 1 5305 EBV-BLMF1 EBV 0.57 2531 NEG 162 5143 8 EBV BLMF1 GLCTLVAML effector memory T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*02:01 B2M MHCI -2643 chip0420_686892 -2.5 9.22 Chip1 T1D_1 T1D TGTGCCAGCAGTCCAACCGGGACTAGCGGGATCGGTGAGCAGTTCTTC CASSPTGTSGIGEQFF TRBV6-1*01 TRBJ2-1*01 40.0 1856.0 _CASSPTGTSGIGEQFF 1 5686 PGT-178 PGT 0.72 1480 PGT-178 134 5552 2 HomoSapiens PGT LLAGIGTVPI Naive T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*02:01 B2M MHCI -2644 chip0420_48308 8.97 12.11 Chip1 T1D_1 T1D TGTGCTGTGAATTCCGGGTATGCACTCAACTTC CAVNSGYALNF TRAV3*01 TRAJ41*01 27.0 2183.0 TGCAGTGCCATAGATACATCCGGGACAGGGGGCTACGAGCAGTACTTC CSAIDTSGTGGYEQYF TRBV20-1*01 TRBJ2-7*01 14.0 720.0 CAVNSGYALNF_CSAIDTSGTGGYEQYF 1 3456 HCVNS4B-1807-1816 HCV 0.79 74 HCVNS4B-1807-1816 133 3323 7 HCV NS4B LLFNILGGWV transitional T cells between effector and memory populations PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*02:01 B2M MHCI -2645 chip0420_194434 15.94 10.22 Chip1 T1D_1 T1D TGTGCCAGCAGCACGGGACAGCTATCGAACACCGGGGAGCTGTTTTTT CASSTGQLSNTGELFF TRBV9*01 TRBJ2-2*01 21.0 1092.0 _CASSTGQLSNTGELFF 82 1918 EBV-BLMF1 EBV 0.45 2531 NEG 136 1782 12 EBV BLMF1 GLCTLVAML effector T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*02:01 B2M MHCI -2646 chip0420_177790 7.92 9.08 Chip1 T1D_2 T1D TGCGCCAGCAGCTCAGACGGAATGAACACTGAAGCTTTCTTT CASSSDGMNTEAFF TRBV10-2*01 TRBJ1-1*01 11.0 278.0 _CASSSDGMNTEAFF 10 7542 EBV-LMP2A EBV 0.89 700 EBV-LMP2A 150 7392 8 EBV LMP2A CLGGLLTMV effector memory T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*02:01 B2M MHCI -2647 chip0420_444073 11.11 8.07 Chip1 T1D_2 T1D TGCGCGAGCAGCGGGGACGGTTTGAGCACTGAGGCTTTCTTT CASSGDGLSTEAFF TRBV10-2*01 TRBJ1-1*01 3.0 227.0 _CASSGDGLSTEAFF 1 5507 EBV-LMP2A EBV 0.93 700 EBV-LMP2A 150 5357 10 EBV LMP2A CLGGLLTMV effector memory T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*02:01 B2M MHCI -2648 chip0420_760903 5.32 9.79 Chip1 T1D_1 T1D TGTGCCAGCAGTTACGCAGGGGGCGCCTATGGCTACACCTTC CASSYAGGAYGYTF TRBV6-5*01 TRBJ1-2*01 40.0 2508.0 _CASSYAGGAYGYTF 2 3703 EBV-LMP2-FLY EBV 0.95 355 EBV-LMP2-FLY 145 3558 6 EBV LMP2 FLYALALLL central memory T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*02:01 B2M MHCI -2649 chip0420_840338 9.14 9.83 Chip1 T1D_1 T1D TGTGCCGTGAATGCGCTCGACAAGCTCATCTTT CAVNALDKLIF TRAV8-1*01 TRAJ34*01 5.0 362.0 CAVNALDKLIF_ 2 7254 EBV-BRLF1 EBV 0.73 1264 NEG 158 7096 8 EBV BRLF1 YVLDHLIVV effector memory T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*02:01 B2M MHCI -2650 chip0420_337448 5.45 12.15 Chip1 T1D_2 T1D TGTGCCAGCAGGCTGCAGGGCACTGAAGCTTTCTTT CASRLQGTEAFF TRBV12-3*01,TRBV12-4*01 TRBJ1-1*01 21.0 1212.0 _CASRLQGTEAFF 1 3137 PGT-178 PGT 0.72 1480 NEG 129 3008 7 HomoSapiens PGT LLAGIGTVPI transitional T cells between effector and memory populations PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*02:01 B2M MHCI -2651 chip0420_344185 11.28 8.13 Chip1 T1D_2 T1D TGCAGCGTGGGGACAGGGGGAACTAATGAAAAACTGTTTTTT CSVGTGGTNEKLFF TRBV29-1*01 TRBJ1-4*01 83.0 3727.0 _CSVGTGGTNEKLFF 638 4188 EBV-BLMF1 EBV 0.7 2531 NEG 169 4019 10 EBV BLMF1 GLCTLVAML effector memory T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*02:01 B2M MHCI -2652 chip0420_756583 7.83 14.14 Chip1 T1D_1 T1D _ 6746 3089 M1 FLU 0.9 1250 NEG 131 2958 7 InfluenzaA M1 GILGFVFTL transitional T cells between effector and memory populations PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*02:01 B2M MHCI -2653 chip0420_97630 6.13 14.05 Chip1 T1D_1 T1D TGTGCCAGTAGTGTCAGGGCAGGAGAGACCCAGTACTTC CASSVRAGETQYF TRBV19*01 TRBJ2-5*01 5.0 292.0 _CASSVRAGETQYF 23 5017 M1 FLU 0.84 1250 M1 144 4873 7 InfluenzaA M1 GILGFVFTL transitional T cells between effector and memory populations PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*02:01 B2M MHCI -2654 chip0420_102472 9.21 11.68 Chip1 T1D_1 T1D TGCAGCGTGGGGACAGGGGGAACTAATGAAAAACTGTTTTTT CSVGTGGTNEKLFF TRBV29-1*01 TRBJ1-4*01 3.0 179.0 _CSVGTGGTNEKLFF 638 3053 EBV-BLMF1 EBV 0.67 2531 NEG 139 2914 9 EBV BLMF1 GLCTLVAML effector memory T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*02:01 B2M MHCI -2655 chip0420_74053 5.56 8.89 Chip1 T1D_2 T1D TGTGCCAGCAGCCGACAGGGCGGGAAGGATGGCTACACCTTC CASSRQGGKDGYTF TRBV6-1*01 TRBJ1-2*01 14.0 495.0 _CASSRQGGKDGYTF 5 7221 EBV-LMP2-FLY EBV 1.0 355 EBV-LMP2-FLY 152 7069 6 EBV LMP2 FLYALALLL central memory T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*02:01 B2M MHCI -2656 chip0420_565537 13.67 9.44 Chip1 T1D_1 T1D TGTGCCGTGAAGGACACCGACAAGCTCATCTTT CAVKDTDKLIF TRAV8-1*01 TRAJ34*01 2.0 74.0 TGTGCCAGTAGTCCCCACTTGGGTGCGGCGGCCGAGCAGTACTTC CASSPHLGAAAEQYF TRBV19*01 TRBJ2-7*01 16.0 850.0 CAVKDTDKLIF_CASSPHLGAAAEQYF 3 3738 EBV-BRLF1 EBV 1.0 1264 NEG 132 3606 12 EBV BRLF1 YVLDHLIVV effector T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*02:01 B2M MHCI -2657 chip0420_485883 15.25 12.11 Chip1 T1D_1 T1D TGTGCTCTCTATAACACCGACAAGCTCATCTTT CALYNTDKLIF TRAV9-2*01 TRAJ34*01 15.0 1199.0 CALYNTDKLIF_ 10 2959 EBV-BLMF1 EBV 0.5 2531 NEG 121 2838 12 EBV BLMF1 GLCTLVAML effector T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*02:01 B2M MHCI -2658 chip0420_410832 10.53 10.66 Chip1 T1D_1 T1D TGTGCCCGTAGGGCCTTGTTGGGGTCCAATCAGCCCCAGCATTTT CARRALLGSNQPQHF TRBV19*01 TRBJ1-5*01 8.0 298.0 _CARRALLGSNQPQHF 1 4587 EBV-BRLF1 EBV 0.85 1264 EBV-BRLF1 158 4429 9 EBV BRLF1 YVLDHLIVV effector memory T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*02:01 B2M MHCI -2659 chip0420_64192 11.94 10.75 Chip1 T1D_2 T1D TGCAGCGTGGGGACAGGGGGAACTAATGAAAAACTGTTTTTT CSVGTGGTNEKLFF TRBV29-1*01 TRBJ1-4*01 49.0 2232.0 _CSVGTGGTNEKLFF 638 2683 EBV-BLMF1 EBV 0.89 2531 NEG 139 2544 9 EBV BLMF1 GLCTLVAML effector memory T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*02:01 B2M MHCI -2660 chip0420_795585 5.96 13.64 Chip1 T1D_1 T1D TGTGCTACGGACGGGGGTGGCGGAAGCCAAGGAAATCTCATCTTT CATDGGGGSQGNLIF TRAV17*01 TRAJ42*01 102.0 2883.0 TGTGCCACCAGTGCTGTCGGGGTACCTACTGAAGCTTTCTTT CATSAVGVPTEAFF TRBV24-1*01 TRBJ1-1*01 18.0 1050.0 CATDGGGGSQGNLIF_CATSAVGVPTEAFF 1 4654 M1 FLU 0.61 1250 M1 132 4522 7 InfluenzaA M1 GILGFVFTL transitional T cells between effector and memory populations PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*02:01 B2M MHCI -2661 chip0420_97575 11.42 8.41 Chip1 T1D_2 T1D TGTGTGGTGAACGGCAGGGATAGCAGCTATAAATTGATCTTC CVVNGRDSSYKLIF TRAV12-1*01 TRAJ12*01 70.0 4028.0 TGTGCCAGCAGCTCGGGACTAGTCGCCCCCGGGGAGCTGTTTTTT CASSSGLVAPGELFF TRBV2*01 TRBJ2-2*01 42.0 3011.0 CVVNGRDSSYKLIF_CASSSGLVAPGELFF 98 3264 EBV-BLMF1 EBV 0.41 2531 NEG 175 3089 10 EBV BLMF1 GLCTLVAML effector memory T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*02:01 B2M MHCI -2662 chip0420_513612 10.06 8.75 Chip1 T1D_2 T1D TGTGCCAGCAGTGATGGACTGCTGAGCTCCTACAATGAGCAGTTCTTC CASSDGLLSSYNEQFF TRBV9*01 TRBJ2-1*01 15.0 1097.0 _CASSDGLLSSYNEQFF 1 3976 EBV-BLMF1 EBV 0.56 2531 NEG 140 3836 8 EBV BLMF1 GLCTLVAML effector memory T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*02:01 B2M MHCI -2663 chip0420_743896 13.64 9.93 Chip1 T1D_1 T1D _ 6746 4776 EBV-BLMF1 EBV 1.0 2531 NEG 145 4631 12 EBV BLMF1 GLCTLVAML effector T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*02:01 B2M MHCI -2664 chip0420_92297 8.27 13.58 Chip1 T1D_2 T1D TGTTCAGGGTATGGGGCTGGGAGTTACCAACTCGCTTTC CSGYGAGSYQLAF TRAV25*01 TRAJ28*01 2.0 25.0 CSGYGAGSYQLAF_ 1 2189 EBV-LMP2A EBV 0.75 700 NEG 127 2062 7 EBV LMP2A CLGGLLTMV transitional T cells between effector and memory populations PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*02:01 B2M MHCI -2665 chip0420_851073 12.04 7.42 Chip1 T1D_1 T1D TGTGCTGACTTAGAATGCTGGCAACCACCGTAAGCTGATTTGG CADLECW??cNHRKLIW TRAV36/DV7*01 TRAJ38*01 4.0 193.0 TGTGCCAGCAGCACGGGACAGCTATCGAACACCGGGGAGCTGTTTTTT CASSTGQLSNTGELFF TRBV9*01 TRBJ2-2*01 27.0 1498.0 CADLECW??cNHRKLIW_CASSTGQLSNTGELFF 2 4367 EBV-BLMF1 EBV 0.56 2531 NEG 143 4224 10 EBV BLMF1 GLCTLVAML effector memory T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*02:01 B2M MHCI -2666 chip0420_819968 13.33 6.98 Chip1 T1D_2 T1D TGCAGCGTGGGGACAGGGGGAACTAATGAAAAACTGTTTTTT CSVGTGGTNEKLFF TRBV29-1*01 TRBJ1-4*01 70.0 3231.0 _CSVGTGGTNEKLFF 638 2522 EBV-BLMF1 EBV 0.83 2531 NEG 159 2363 10 EBV BLMF1 GLCTLVAML effector memory T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*02:01 B2M MHCI -2667 chip0420_361956 5.76 12.71 Chip1 T1D_1 T1D TGTGCCAGTAGTATGGGGGCGCATGGCTACACCTTC CASSMGAHGYTF TRBV19*01 TRBJ1-2*01 56.0 3793.0 _CASSMGAHGYTF 6 6080 M1 FLU 0.73 1250 M1 158 5922 7 InfluenzaA M1 GILGFVFTL transitional T cells between effector and memory populations PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*02:01 B2M MHCI -2668 chip0420_135533 -1.13 9.62 Chip1 T1D_1 T1D TGTGCCAGCACCCCACTGGCGGGGGGGCTTGCAGATACGCAGTATTTT CASTPLAGGLADTQYF TRBV2*01 TRBJ2-3*01 25.0 1458.0 _CASTPLAGGLADTQYF 1 4444 ZNT8-153-161 ZNT8 0.73 41 ZNT8-153-161 135 4309 4 HomoSapiens ZNT8 VVTGVLVYL Naive T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*02:01 B2M MHCI -2669 chip0420_95682 12.51 13.3 Chip1 T1D_2 T1D _ 6746 1644 EBV-BRLF1 EBV 0.93 1264 NEG 168 1476 11 EBV BRLF1 YVLDHLIVV effector T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*02:01 B2M MHCI -2670 chip0420_839181 -1.81 8.73 Chip1 T1D_1 T1D TGTGCCAGTAGTACCGGACAGGGGGGATTTTCACCCCTCCACTTT CASSTGQGGFSPLHF TRBV19*01 TRBJ1-6*01 33.0 1880.0 _CASSTGQGGFSPLHF 1 5883 ZNT8-165-173 ZNT8 0.57 11 NEG 129 5754 4 HomoSapiens ZNT8 RLLYPDYQI Naive T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*02:01 B2M MHCI -2671 chip0420_689724 6.61 11.54 Chip1 T1D_1 T1D TGTGCAGGAGAAGGCGGAGGAAGCCAAGGAAATCTCATCTTT CAGEGGGSQGNLIF TRAV27*01 TRAJ42*01 65.0 1993.0 CAGEGGGSQGNLIF_ 1 5536 M1 FLU 0.85 1250 M1 146 5390 7 InfluenzaA M1 GILGFVFTL transitional T cells between effector and memory populations PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*02:01 B2M MHCI -2672 chip0420_826106 12.27 13.05 Chip1 T1D_2 T1D TGTGCCTTAGGAGGACTGACCTTT CALGGLTF TRAV8-1*01 TRAJ22*01 10.0 991.0 CALGGLTF_ 6 1845 EBV-BRLF1 EBV 1.0 1264 EBV-BRLF1 133 1712 11 EBV BRLF1 YVLDHLIVV effector T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*02:01 B2M MHCI -2673 chip0420_605788 5.27 10.85 Chip1 T1D_1 T1D _ 6746 4559 EBV-LMP2-FLY EBV 0.8 355 EBV-LMP2-FLY 111 4448 6 EBV LMP2 FLYALALLL central memory T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*02:01 B2M MHCI -2674 chip0420_853749 10.29 11.02 Chip1 T1D_2 T1D TGTGCTCTAAAAAACACCGACAAGCTCATCTTT CALKNTDKLIF TRAV16*01 TRAJ34*01 68.0 6173.0 TGCGCCAGCAGTCAATCGAGAGGGTCGCTCTGGGATACGCAGTATTTT CASSQSRGSLWDTQYF TRBV4-3*01 TRBJ2-3*01 63.0 3150.0 CALKNTDKLIF_CASSQSRGSLWDTQYF 5 3783 EBV-BRLF1 EBV 0.93 1264 EBV-BRLF1 133 3650 9 EBV BRLF1 YVLDHLIVV effector memory T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*02:01 B2M MHCI -2675 chip0420_617715 8.96 9.04 Chip1 T1D_1 T1D TGCAGCGTCGGCTCCAGGGGAACTAATGAAAAACTGTTTTTT CSVGSRGTNEKLFF TRBV29-1*01 TRBJ1-4*01 95.0 5585.0 _CSVGSRGTNEKLFF 283 5423 EBV-BLMF1 EBV 0.82 2531 NEG 142 5281 8 EBV BLMF1 GLCTLVAML effector memory T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*02:01 B2M MHCI -2676 chip0420_133159 12.76 13.76 Chip1 T1D_1 T1D TGTGCCAGCAGTCCGGACCAAACTAGCTCCTACAATGAGCAGTTCTTC CASSPDQTSSYNEQFF TRBV27*01 TRBJ2-1*01 33.0 1932.0 _CASSPDQTSSYNEQFF 47 1092 EBV-BRLF1 EBV 0.5 1264 NEG 150 942 11 EBV BRLF1 YVLDHLIVV effector T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*02:01 B2M MHCI -2677 chip0420_697719 -0.65 8.73 Chip1 T1D_1 T1D TGTGTGGTGATCGGGGTAGCAGCTATACATTGATCTTC CVVIGVg?cSYTLIF TRAV12-1*01 TRAJ12*01 31.0 2112.0 CVVIGVg?cSYTLIF_ 1 6052 HCV-K1YI7V HCV 0.58 3 NEG 114 5938 4 HCV POL YLVALGVNAV Naive T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*02:01 B2M MHCI -2678 chip0420_681527 8.08 8.12 Chip1 T1D_1 T1D TGTCCTGACTTAGCCTGCTGGACACCACCGTTTGCTGATTTGG CPDLACW??aHHRLLIW TRAV36/DV7*01 TRAJ38*01 37.0 2130.0 TGTGCCAGCAGCACGGGACAGCTATCGAACACCGGGGAGCTGTTTTTT CASSTGQLSNTGELFF TRBV9*01 TRBJ2-2*01 49.0 2909.0 CPDLACW??aHHRLLIW_CASSTGQLSNTGELFF 1 6626 EBV-BLMF1 EBV 0.88 2531 NEG 128 6498 8 EBV BLMF1 GLCTLVAML effector memory T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*02:01 B2M MHCI -2679 chip0420_133884 9.09 9.98 Chip1 T1D_1 T1D TGTGCCAGCAGTTCGGGACAGGTACTTCCCAATGAGCAGTTCTTC CASSSGQVLPNEQFF TRBV2*01 TRBJ2-1*01 25.0 1640.0 _CASSSGQVLPNEQFF 61 3351 EBV-BLMF1 EBV 0.56 2531 NEG 180 3171 8 EBV BLMF1 GLCTLVAML effector memory T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*02:01 B2M MHCI -2680 chip0420_766655 11.47 10.98 Chip1 T1D_2 T1D TGCAGCGTGGGGACAGGGGGCACTAATGAAAAACTGTTTTTT CSVGTGGTNEKLFF TRBV29-1*01 TRBJ1-4*01 35.0 1493.0 _CSVGTGGTNEKLFF 638 2960 EBV-BLMF1 EBV 0.62 2531 NEG 156 2804 9 EBV BLMF1 GLCTLVAML effector memory T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*02:01 B2M MHCI -2681 chip0420_727898 11.0 10.69 Chip1 T1D_1 T1D TGTGTGGGCCCTCGGGCTGGAGGCTTCCAAACTATCTTT CVGPRAGGFQTIF TRAV12-1*01 TRAJ9*01 2.0 68.0 TGTGCCAGCAGTGAGGCATTTCTAGCGGACAATGAGCAGTTCTTC CASSEAFLADNEQFF TRBV6-4*01 TRBJ2-1*01 15.0 789.0 CVGPRAGGFQTIF_CASSEAFLADNEQFF 1 4694 EBV-BRLF1 EBV 0.88 1264 NEG 130 4564 9 EBV BRLF1 YVLDHLIVV effector memory T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*02:01 B2M MHCI -2682 chip0420_760269 6.48 14.03 Chip1 T1D_1 T1D TTGGCTGTGAGTGATCGGGATGGAGGCTTCAAGACTAGCTTT LAVSDRDGGFKTSF TRAV8-4*01 TRAJ9*01 8.0 871.0 CTGTGCCAGTAGTATAAATGGGGGCCGGAGGGCTGGCTACACCTTC LCQ*YKWgg??gcRRAGYTF TRBV19*01 TRBJ1-2*01 12.0 466.0 LAVSDRDGGFKTSF_LCQ*YKWgg??gcRRAGYTF 1 3491 M1 FLU 1.0 1250 M1 143 3348 7 InfluenzaA M1 GILGFVFTL transitional T cells between effector and memory populations PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*02:01 B2M MHCI -2683 chip0420_534084 10.0 8.54 Chip1 T1D_1 T1D TGCAGCGTCGGCTCCAGGGGAACTAATGAAAAACTGTTTTTT CSVGSRGTNEKLFF TRBV29-1*01 TRBJ1-4*01 94.0 4969.0 _CSVGSRGTNEKLFF 283 3561 EBV-BLMF1 EBV 0.5 2531 NEG 145 3416 10 EBV BLMF1 GLCTLVAML effector memory T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*02:01 B2M MHCI -2684 chip0420_150922 9.62 11.05 Chip1 T1D_2 T1D TGTGCCTGGAGAGGGGAACCCTCCTACAATGAGCAGTTCTTC CAWRGEPSYNEQFF TRBV30*01 TRBJ2-1*01 70.0 4150.0 _CAWRGEPSYNEQFF 3 4037 EBV-BRLF1 EBV 1.0 1264 EBV-BRLF1 139 3898 9 EBV BRLF1 YVLDHLIVV effector memory T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*02:01 B2M MHCI -2685 chip0420_63239 7.79 10.11 Chip1 T1D_2 T1D TGTGCCAGCAACTCAGCGGGGAACAATGAGCAGTTCTTC CASNSAGNNEQFF TRBV9*01 TRBJ2-1*01 19.0 1092.0 _CASNSAGNNEQFF 1 4852 EBV-BLMF1 EBV 0.74 2531 NEG 145 4707 8 EBV BLMF1 GLCTLVAML effector memory T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*02:01 B2M MHCI -2686 chip0420_797844 15.48 9.18 Chip1 T1D_1 T1D TGTGCCAGCAGCACGGGACAGCTATCGAACACCGGGGAGCTGTTTTTT CASSTGQLSNTGELFF TRBV9*01 TRBJ2-2*01 9.0 262.0 _CASSTGQLSNTGELFF 82 3254 EBV-BLMF1 EBV 0.71 2531 NEG 149 3105 12 EBV BLMF1 GLCTLVAML effector T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*02:01 B2M MHCI -2687 chip0420_224399 9.29 9.31 Chip1 T1D_2 T1D TGTGTGGTGAACGGCAGGGATAGCAGCTATAAATTGATCTTC CVVNGRDSSYKLIF TRAV12-1*01 TRAJ12*01 47.0 2054.0 TGTGCCAGCAGCTCGGGACTAGTCGCCCCCGGGGAGCTGTTTTTT CASSSGLVAPGELFF TRBV2*01 TRBJ2-2*01 84.0 5636.0 CVVNGRDSSYKLIF_CASSSGLVAPGELFF 98 4860 EBV-BLMF1 EBV 0.6 2531 NEG 158 4702 8 EBV BLMF1 GLCTLVAML effector memory T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*02:01 B2M MHCI -2688 chip0420_415509 10.61 8.99 Chip1 T1D_1 T1D TGCGGCCCAGCGGAACCTAACGACTACAAGCTCAGCTTT CGPAEPNDYKLSF TRAV30*01 TRAJ20*01 37.0 2408.0 TGTGCCAGCAGCACGGGACAGCTATCGAACACCGGGGAGCTGTTTTTT CASSTGQLSNTGELFF TRBV9*01 TRBJ2-2*01 8.0 305.0 CGPAEPNDYKLSF_CASSTGQLSNTGELFF 8 2849 EBV-BLMF1 EBV 0.62 2531 EBV-BLMF1 156 2693 10 EBV BLMF1 GLCTLVAML effector memory T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*02:01 B2M MHCI -2689 chip0420_645859 6.33 12.47 Chip1 healthy_1 healthy TGTGCCAGTAGTATACGGTCTGCCTACGAGCAGTACTTC CASSIRSAYEQYF TRBV19*01 TRBJ2-7*01 3.0 65.0 _CASSIRSAYEQYF 11 7148 M1 FLU 0.9 1250 M1 148 7000 7 InfluenzaA M1 GILGFVFTL transitional T cells between effector and memory populations PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*02:01 B2M MHCI -2690 chip0420_104970 10.2 10.28 Chip1 T1D_1 T1D TGTGCCAGCAGTGACGGTCGGGTCCACCCGGGGACCCAGTACTTC CASSDGRVHPGTQYF TRBV2*01 TRBJ2-5*01 59.0 4258.0 _CASSDGRVHPGTQYF 24 3795 EBV-BLMF1 EBV 0.6 2531 NEG 134 3661 9 EBV BLMF1 GLCTLVAML effector memory T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*02:01 B2M MHCI -2691 chip0420_680353 -4.47 9.3 Chip1 healthy_2 healthy _ 6746 5019 IAPP-STN-9 IAPP 0.9 48 IAPP-STN-9 132 4887 2 HomoSapiens IAPP STNVGSNTY Naive T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*01:01 B2M MHCI -2692 chip0420_661877 15.32 9.59 Chip1 T1D_1 T1D TGTGCCAGCAGCACGGGACAGCTATCGAACACCGGGGAGCTGTTTTTT CASSTGQLSNTGELFF TRBV9*01 TRBJ2-2*01 1.0 29.0 _CASSTGQLSNTGELFF 82 2018 EBV-BLMF1 EBV 0.82 2531 NEG 138 1880 12 EBV BLMF1 GLCTLVAML effector T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*02:01 B2M MHCI -2693 chip0420_363644 9.86 9.01 Chip1 T1D_1 T1D TGTGCCGTGAAGGGGTATGACAAGATCATCTTT CAVKGYDKIIF TRAV8-1*01 TRAJ30*01 21.0 2095.0 TGTGCCAGCAGTCCGGACCAAACTAGCTCCTACAATGAGCAGTTCTTC CASSPDQTSSYNEQFF TRBV27*01 TRBJ2-1*01 46.0 2368.0 CAVKGYDKIIF_CASSPDQTSSYNEQFF 5 3015 EBV-BRLF1 EBV 0.87 1264 EBV-BRLF1 123 2892 8 EBV BRLF1 YVLDHLIVV effector memory T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*02:01 B2M MHCI -2694 chip0420_854507 5.83 12.68 Chip1 T1D_1 T1D _ 6746 5150 M1 FLU 0.76 1250 M1 129 5021 7 InfluenzaA M1 GILGFVFTL transitional T cells between effector and memory populations PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*02:01 B2M MHCI -2695 chip0420_408001 0.82 5.5 Chip1 healthy_2 healthy _ 6746 4954 ROTA-VP3 ROTA 0.5 41 NEG 126 4828 5 RotavirusA VP3 YLLPGWKL natural killer-like T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*02:01 B2M MHCI -2696 chip0420_54576 12.97 8.24 Chip1 T1D_2 T1D TGCAGCGTGGGGACAGGGGGAACTAATGAAAAACTGTTTTTT CSVGTGGTNEKLFF TRBV29-1*01 TRBJ1-4*01 35.0 1742.0 _CSVGTGGTNEKLFF 638 2692 EBV-BLMF1 EBV 0.75 2531 NEG 127 2565 10 EBV BLMF1 GLCTLVAML effector memory T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*02:01 B2M MHCI -2697 chip0420_766877 10.46 8.6 Chip1 T1D_1 T1D TGCAGTGCCATAGATACATCCGGGACAGGGGGCTACGAGCAGTACTTC CSAIDTSGTGGYEQYF TRBV20-1*01 TRBJ2-7*01 1.0 16.0 _CSAIDTSGTGGYEQYF 5 3865 HCVNS4B-1807-1816 HCV 0.56 74 HCVNS4B-1807-1816 145 3720 10 HCV NS4B LLFNILGGWV effector memory T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*02:01 B2M MHCI -2698 chip0420_520815 -1.34 11.49 Chip1 T1D_2 T1D TGTGCAATGCGCCTATCTATCTTTGGAAATGAGAAATTAACCTTT CAMRLSIFGNEKLTF TRAV12-3*01 TRAJ48*01 4.0 122.0 TGTGCCAGCAGTGCCGGGACCGGTAATGAAAAACTGTTTTTT CASSAGTGNEKLFF TRBV12-3*01,TRBV12-4*01 TRBJ1-4*01 3.0 125.0 CAMRLSIFGNEKLTF_CASSAGTGNEKLFF 1 3552 PGT-178 PGT 0.81 1480 PGT-178 134 3418 3 HomoSapiens PGT LLAGIGTVPI Naive T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*02:01 B2M MHCI -2699 chip0420_455140 -3.31 13.54 Chip1 T1D_1 T1D TGTGCCGTGGTTCTAGGATACAGCACCCTCACCTTT CAVVLGYSTLTF TRAV12-2*01 TRAJ11*01 55.0 4144.0 CAVVLGYSTLTF_ 1 4186 PGT-178 PGT 0.76 1480 PGT-178 138 4048 1 HomoSapiens PGT LLAGIGTVPI Naive T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*02:01 B2M MHCI -2700 chip0420_236387 11.27 10.26 Chip1 T1D_1 T1D TGTGCCAGCAGTTCCGGAGGGAACGTGGATACGCAGTATTTT CASSSGGNVDTQYF TRBV7-3*01 TRBJ2-3*01 2.0 32.0 _CASSSGGNVDTQYF 47 3893 EBV-BLMF1 EBV 1.0 2531 NEG 142 3751 9 EBV BLMF1 GLCTLVAML effector memory T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*02:01 B2M MHCI -2701 chip0420_93436 11.45 8.97 Chip1 T1D_1 T1D _ 6746 3030 EBV-BLMF1 EBV 0.71 2531 NEG 136 2894 10 EBV BLMF1 GLCTLVAML effector memory T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*02:01 B2M MHCI -2702 chip0420_12158 7.46 13.45 Chip1 T1D_1 T1D TGTGCCGTGAACAAGGAGAACACCGACAAGCTCATCTTT CAVNKENTDKLIF TRAV12-2*01 TRAJ34*01 39.0 2096.0 TGTGCCAGTAGTATTGGAGCGGGAGTAAAGTTCTTC CASSIGAGVKFF TRBV19*01 TRBJ2-1*01 18.0 1280.0 CAVNKENTDKLIF_CASSIGAGVKFF 1 2842 M1 FLU 0.96 1250 M1 124 2718 7 InfluenzaA M1 GILGFVFTL transitional T cells between effector and memory populations PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*02:01 B2M MHCI -2703 chip0420_784331 -0.83 10.38 Chip1 T1D_1 T1D _ 6746 4731 PGT-178 PGT 0.52 1480 PGT-178 133 4598 3 HomoSapiens PGT LLAGIGTVPI Naive T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*02:01 B2M MHCI -2704 chip0420_621526 16.33 11.04 Chip1 T1D_1 T1D TGTGCCGTGAAGGGGTATGACAAGATCATCTTT CAVKGYDKIIF TRAV8-1*01 TRAJ30*01 3.0 216.0 TGTGCCAGCAGTCCGGACCAAACTAGCTCCTACAATGAGCAGTTCTTC CASSPDQTSSYNEQFF TRBV27*01 TRBJ2-1*01 46.0 3036.0 CAVKGYDKIIF_CASSPDQTSSYNEQFF 5 3095 EBV-BRLF1 EBV 1.0 1264 EBV-BRLF1 131 2964 12 EBV BRLF1 YVLDHLIVV effector T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*02:01 B2M MHCI -2705 chip0420_455729 5.27 9.55 Chip1 T1D_1 T1D _ 6746 4225 EBV-LMP2-FLY EBV 0.92 355 EBV-LMP2-FLY 146 4079 6 EBV LMP2 FLYALALLL central memory T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*02:01 B2M MHCI -2706 chip0420_789927 5.8 11.26 Chip1 T1D_2 T1D TGTGCTACGGTGGGCGATTCAGGATACAGCACCCTCACCTTT CATVGDSGYSTLTF TRAV17*01 TRAJ11*01 3.0 214.0 TGTGCCAGCAGCCCCCAAGGGGGGGCCAGTGAAGCTTTCTTT CASSPQGGASEAFF TRBV6-1*01 TRBJ1-1*01 14.0 921.0 CATVGDSGYSTLTF_CASSPQGGASEAFF 1 5056 EBV-LMP2-FLY EBV 0.9 355 NEG 154 4902 6 EBV LMP2 FLYALALLL central memory T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*02:01 B2M MHCI -2707 chip0420_770907 8.67 12.02 Chip1 T1D_2 T1D _ 6746 2954 GAD65-536-545 GAD65 0.9 7 GAD65-536-545 142 2812 7 HomoSapiens GAD65 RMMEYGTTMV transitional T cells between effector and memory populations PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*02:01 B2M MHCI -2708 chip0420_696031 9.9 7.25 Chip1 T1D_3 T1D _ 6746 3827 BZLF1-190-197 EBV 0.88 2156 NEG 128 3699 10 EBV BZLF1 RAKFKQLL effector memory T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-B*08:01 B2M MHCI -2709 chip0420_349227 8.45 10.06 Chip1 T1D_1 T1D TGTGCCAGCAGTCCGGACTATTCCGAGCAGTACTTC CASSPDYSEQYF TRBV6-5*01,TRBV6-1*01 TRBJ2-7*01 11.0 588.0 _CASSPDYSEQYF 1 5116 EBV-BRLF1 EBV 0.8 1264 NEG 143 4973 8 EBV BRLF1 YVLDHLIVV effector memory T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*02:01 B2M MHCI -2710 chip0420_339413 14.2 7.86 Chip1 T1D_2 T1D TGTGCCAGCAGCCAAGGAGGGGCGGGAGCCGCAGATACGCAGTATTTT CASSQGGAGAADTQYF TRBV4-2*01 TRBJ2-3*01 79.0 3412.0 _CASSQGGAGAADTQYF 3 2470 EBV-BRLF1 EBV 0.95 1264 EBV-BRLF1 178 2292 10 EBV BRLF1 YVLDHLIVV effector memory T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*02:01 B2M MHCI -2711 chip0420_188828 -1.78 11.16 Chip1 T1D_1 T1D _ 6746 5414 PGT-178 PGT 0.59 1480 PGT-178 124 5290 4 HomoSapiens PGT LLAGIGTVPI Naive T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*02:01 B2M MHCI -2712 chip0420_799513 5.73 9.58 Chip1 T1D_2 T1D TGTGCCAGCAGCCGACAGGGAGGGAAGGATGGCTACACCTTC CASSRQGGKDGYTF TRBV6-1*01 TRBJ1-2*01 8.0 408.0 _CASSRQGGKDGYTF 5 7207 EBV-LMP2-FLY EBV 0.96 355 EBV-LMP2-FLY 134 7073 6 EBV LMP2 FLYALALLL central memory T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*02:01 B2M MHCI -2713 chip0420_676715 9.01 9.52 Chip1 T1D_2 T1D _ 6746 5041 EBV-BRLF1 EBV 0.97 1264 EBV-BRLF1 148 4893 8 EBV BRLF1 YVLDHLIVV effector memory T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*02:01 B2M MHCI -2714 chip0420_667935 7.69 13.08 Chip1 healthy_1 healthy _ 6746 2839 PGT-178 PGT 0.83 1480 PGT-178 116 2723 7 HomoSapiens PGT LLAGIGTVPI transitional T cells between effector and memory populations PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*02:01 B2M MHCI -2715 chip0420_121031 9.65 9.72 Chip1 T1D_2 T1D TGTGCCAGCAACTTAGCGGGGAACAATGAGCAGTTCTTC CASNLAGNNEQFF TRBV9*01 TRBJ2-1*01 15.0 910.0 _CASNLAGNNEQFF 15 4951 EBV-BLMF1 EBV 0.85 2531 EBV-BLMF1 153 4798 9 EBV BLMF1 GLCTLVAML effector memory T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*02:01 B2M MHCI -2716 chip0420_100817 -1.19 11.04 Chip1 T1D_1 T1D TGTGCAATGCTGCGATCTAACTTTGGAAATGAGAAATTAACCTTT CAMLRSNFGNEKLTF TRAV12-3*01 TRAJ48*01 100.0 4288.0 TGTGCCAGCAGCTTAGCTGCGGGGGAGCTTACTAGCACAGATACGCAGTATTTT CASSLAAGELTSTDTQYF TRBV11-1*01 TRBJ2-3*01 9.0 240.0 CAMLRSNFGNEKLTF_CASSLAAGELTSTDTQYF 1 4856 PGT-178 PGT 0.75 1480 PGT-178 133 4723 3 HomoSapiens PGT LLAGIGTVPI Naive T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*02:01 B2M MHCI -2717 chip0420_224819 12.76 10.16 Chip1 T1D_1 T1D TGTGCTTATAGGAGCCCGCCCTCATCTGAAAAGCTGGTCTTT CAYRSPPSSEKLVF TRAV38-2/DV8*01 TRAJ57*01 1.0 10.0 TGTGCCACCCAACAGGGGAGGGACAGTCAGCCCCAGCATTTT CATQQGRDSQPQHF TRBV28*01 TRBJ1-5*01 28.0 1223.0 CAYRSPPSSEKLVF_CATQQGRDSQPQHF 1 3189 EBV-BLMF1 EBV 0.89 2531 NEG 135 3054 9 EBV BLMF1 GLCTLVAML effector memory T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*02:01 B2M MHCI -2718 chip0420_597744 9.08 8.02 Chip1 T1D_1 T1D TGTGCCAGCAGTTCCGGAGGGAACGTGGATACGCAGTATTTT CASSSGGNVDTQYF TRBV7-3*01 TRBJ2-3*01 17.0 1012.0 _CASSSGGNVDTQYF 47 3731 EBV-BLMF1 EBV 0.6 2531 NEG 141 3590 8 EBV BLMF1 GLCTLVAML effector memory T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*02:01 B2M MHCI -2719 chip0420_576289 10.01 10.41 Chip1 T1D_1 T1D _ 6746 3988 EBV-BRLF1 EBV 0.96 1264 EBV-BRLF1 151 3837 9 EBV BRLF1 YVLDHLIVV effector memory T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*02:01 B2M MHCI -2720 chip0420_410617 11.08 10.35 Chip1 T1D_1 T1D TGCGGCCCAGAGGAACCTAACGACTACAAGCTCAGCTTT CGPEEPNDYKLSF TRAV30*01 TRAJ20*01 10.0 402.0 CGPEEPNDYKLSF_ 13 2915 EBV-BLMF1 EBV 0.67 2531 NEG 142 2773 9 EBV BLMF1 GLCTLVAML effector memory T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*02:01 B2M MHCI -2721 chip0420_199945 -2.87 9.49 Chip1 T1D_1 T1D TGTGCCAGCAGCTTTTTAGCCAGCGGGGGAGACAATGAGCAGTTCTTC CASSFLASGGDNEQFF TRBV11-2*01 TRBJ2-1*01 27.0 1167.0 _CASSFLASGGDNEQFF 1 5129 PGT-178 PGT 0.7 1480 PGT-178 111 5018 2 HomoSapiens PGT LLAGIGTVPI Naive T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*02:01 B2M MHCI -2722 chip0420_46968 11.96 8.64 Chip1 T1D_2 T1D _ 6746 2548 EBV-BRLF1 EBV 0.92 1264 NEG 135 2413 10 EBV BRLF1 YVLDHLIVV effector memory T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*02:01 B2M MHCI -2723 chip0420_53674 6.03 12.8 Chip1 healthy_2 healthy _ 6746 3831 M1 FLU 0.64 1250 NEG 129 3702 7 InfluenzaA M1 GILGFVFTL transitional T cells between effector and memory populations PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*02:01 B2M MHCI -2724 chip0420_806500 -4.13 7.81 Chip1 T1D_1 T1D TGTGCCGGCAGTTACTCCCGGACCGGGGGACCCCACTCTGGAAACACCATATATTTT CAGSYSRTGGPHSGNTIYF TRBV6-2*01,TRBV6-3*01 TRBJ1-3*01 5.0 126.0 _CAGSYSRTGGPHSGNTIYF 1 6398 HCV-A9N HCV 0.78 5 NEG 128 6270 2 HCV POL KLVALGINNV Naive T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*02:01 B2M MHCI -2725 chip0420_686309 8.59 10.64 Chip1 T1D_2 T1D TGCAGCGTGGGGACAGGGGGAACTAATGAAAAACTGTTTTTT CSVGTGGTNEKLFF TRBV29-1*01 TRBJ1-4*01 111.0 4906.0 _CSVGTGGTNEKLFF 638 5101 EBV-BLMF1 EBV 0.75 2531 NEG 139 4962 8 EBV BLMF1 GLCTLVAML effector memory T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*02:01 B2M MHCI -2726 chip0420_406126 -3.87 9.5 Chip1 T1D_1 T1D TGCCTCGTGGGTGATCAGCCTTCAGATGGCCAGTTGCTGCTCTTT CLVGDQPSDGQLLLF TRAV4*01 TRAJ16*01 6.0 786.0 TGTGCCAGCAGTTCCCTTTCGGGGGGTACAGATACGCAGTATTTT CASSSLSGGTDTQYF TRBV28*01 TRBJ2-3*01 38.0 2389.0 CLVGDQPSDGQLLLF_CASSSLSGGTDTQYF 1 6144 PGT-178 PGT 0.94 1480 PGT-178 164 5980 2 HomoSapiens PGT LLAGIGTVPI Naive T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*02:01 B2M MHCI -2727 chip0420_315248 9.89 10.19 Chip1 T1D_1 T1D TGCAGCGTCGGCTCCAGGGGAACTAATGAAAAACTGTTTTTT CSVGSRGTNEKLFF TRBV29-1*01 TRBJ1-4*01 106.0 4960.0 _CSVGSRGTNEKLFF 283 4555 EBV-BLMF1 EBV 0.78 2531 NEG 150 4405 9 EBV BLMF1 GLCTLVAML effector memory T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*02:01 B2M MHCI -2728 chip0420_288650 5.84 12.43 Chip1 T1D_1 T1D TGTGCTGTGAGGTCTTTGATATGGAAACAAACTGGTCTTT CAVRSLat??atGNKLVF TRAV21*01 TRAJ47*01 1.0 33.0 CAVRSLat??atGNKLVF_ 1 4148 M1 FLU 1.0 1250 M1 139 4009 7 InfluenzaA M1 GILGFVFTL transitional T cells between effector and memory populations PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*02:01 B2M MHCI -2729 chip0420_841432 6.8 13.15 Chip1 T1D_1 T1D TGTGCAATGAGAGAGGGCGTCGTGGAATATGGAAACAAACTGGTCTTT CAMREGVVEYGNKLVF TRAV14/DV4*01 TRAJ47*01 16.0 387.0 TGTGCCAGTAGTTTTGGAACCGGGGAGCTGTTTTTT CASSFGTGELFF TRBV19*01 TRBJ2-2*01 16.0 923.0 CAMREGVVEYGNKLVF_CASSFGTGELFF 1 3054 M1 FLU 0.9 1250 NEG 138 2916 7 InfluenzaA M1 GILGFVFTL transitional T cells between effector and memory populations PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*02:01 B2M MHCI -2730 chip0420_748681 -3.84 11.02 Chip1 T1D_1 T1D TGTGTGGCCGGAATAGGCTTT CVAGIGF TRAV12-1*01 TRAJ48*01,TRAJ11*01 2.0 5.0 TGCGCCAGCCGCTTGGGAATATCTGAAAACACCATATATTTT CASRLGISENTIYF TRBV5-1*01 TRBJ1-3*01 1.0 13.0 CVAGIGF_CASRLGISENTIYF 1 4301 PGT-178 PGT 0.85 1480 PGT-178 109 4192 2 HomoSapiens PGT LLAGIGTVPI Naive T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*02:01 B2M MHCI -2731 chip0420_230740 -2.12 12.62 Chip1 T1D_1 T1D _ 6746 3314 PGT-178 PGT 0.53 1480 PGT-178 120 3194 4 HomoSapiens PGT LLAGIGTVPI Naive T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*02:01 B2M MHCI -2732 chip0420_721238 -2.51 13.52 Chip1 T1D_1 T1D TGTGCCAGCCGCCAAGCCCCACAAGGGAGCCAGCACTGAAGCTTTCTTT CASRQAPQ??gGASTEAFF TRBV3-1*01 TRBJ1-1*01 24.0 1303.0 _CASRQAPQ??gGASTEAFF 1 3535 PGT-178 PGT 0.7 1480 PGT-178 122 3413 1 HomoSapiens PGT LLAGIGTVPI Naive T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*02:01 B2M MHCI -2733 chip0420_570775 11.74 7.21 Chip1 T1D_2 T1D _ 6746 3674 EBV-LMP2A EBV 0.94 700 EBV-LMP2A 130 3544 10 EBV LMP2A CLGGLLTMV effector memory T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*02:01 B2M MHCI -2734 chip0420_557414 -1.73 7.22 Chip1 T1D_1 T1D _ 6746 6102 GAD65-114-123 GAD65 0.72 5 GAD65-114-123 130 5972 3 HomoSapiens GAD65 VMNILLQYVV Naive T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*02:01 B2M MHCI -2735 chip0420_486889 10.84 11.9 Chip1 T1D_2 T1D TGAGCAGCAAGCGAGCTTACTGGAGCCAGTAGTAAGCTGACATTT *AASELTGASSKLTF TRAV29/DV5*01 TRAJ56*01 9.0 226.0 TGCGCCAGCAGAGCGGGAGCCGGGGATACGCAGTATTTT CASRAGAGDTQYF TRBV10-2*01 TRBJ2-3*01 25.0 1752.0 *AASELTGASSKLTF_CASRAGAGDTQYF 1 2094 EBV-BLMF1 EBV 0.75 2531 NEG 125 1969 9 EBV BLMF1 GLCTLVAML effector memory T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*02:01 B2M MHCI -2736 chip0420_316469 10.42 8.13 Chip1 T1D_2 T1D TGTGCCGTGAAGGACACCGACAAGCTCATCTTT CAVKDTDKLIF TRAV8-1*01 TRAJ34*01 25.0 2114.0 CAVKDTDKLIF_ 56 2524 EBV-BRLF1 EBV 0.88 1264 NEG 141 2383 10 EBV BRLF1 YVLDHLIVV effector memory T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*02:01 B2M MHCI -2737 chip0420_88245 13.62 11.16 Chip1 T1D_2 T1D TGTGCCAGCAGCTCGGGACTAGTCGCCCCCGGGGAGCTGTTTTTT CASSSGLVAPGELFF TRBV2*01 TRBJ2-2*01 3.0 195.0 _CASSSGLVAPGELFF 133 2427 EBV-BLMF1 EBV 0.44 2531 NEG 136 2291 9 EBV BLMF1 GLCTLVAML effector memory T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*02:01 B2M MHCI -2738 chip0420_634722 11.47 8.19 Chip1 T1D_2 T1D TGTGCCACCAGTGATTTCCTTGAGGAGACCCAGTACTTC CATSDFLEETQYF TRBV24-1*01 TRBJ2-5*01 31.0 1845.0 _CATSDFLEETQYF 2 2823 EBV-BRLF1 EBV 1.0 1264 EBV-BRLF1 157 2666 10 EBV BRLF1 YVLDHLIVV effector memory T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*02:01 B2M MHCI -2739 chip0420_672466 14.8 8.69 Chip1 T1D_1 T1D TGTGCCGTGAAGGGGTATGACAAGATCATCTTT CAVKGYDKIIF TRAV8-1*01 TRAJ30*01 2.0 354.0 TGTGCTGTGAGTGATACCGGCCCGAACCTACAAATACATCTTT CAVSDTG??cRTYKYIF TRAV8-6*01 TRAJ40*01 2.0 176.0 0.5 TGTGCCAGCAGTCCGGACCAAACTAGCTCCTACAATGAGCAGTTCTTC CASSPDQTSSYNEQFF TRBV27*01 TRBJ2-1*01 1.0 11.0 CAVKGYDKIIF_CASSPDQTSSYNEQFF 5 2376 EBV-BRLF1 EBV 0.93 1264 NEG 131 2245 12 EBV BRLF1 YVLDHLIVV effector T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*02:01 B2M MHCI -2740 chip0420_157453 11.21 10.74 Chip1 T1D_2 T1D TGTGTGGTGAACGGCAGGGATAGCAGCTATAAATTGATCTTC CVVNGRDSSYKLIF TRAV12-1*01 TRAJ12*01 11.0 630.0 TGTGCTTCCCTAACCCCGGGGGCTTCCAAGATAATCTTT CASLTPGASKIIF TRAV8-6*01 TRAJ3*01 11.0 586.0 0.5 TGTGCCAGCAGCTCGGGACTAGTCGCCCCCGGGGAGCTGTTTTTT CASSSGLVAPGELFF TRBV2*01 TRBJ2-2*01 57.0 3349.0 CVVNGRDSSYKLIF_CASSSGLVAPGELFF 98 2636 EBV-BLMF1 EBV 0.57 2531 NEG 162 2474 9 EBV BLMF1 GLCTLVAML effector memory T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*02:01 B2M MHCI -2741 chip0420_586603 15.86 11.35 Chip1 T1D_1 T1D TGTGCCAGCAGCCCAGTTAGCGGGTCAACCTACGAGCAGTACTTC CASSPVSGSTYEQYF TRBV3-1*01 TRBJ2-7*01 1.0 22.0 _CASSPVSGSTYEQYF 80 2060 EBV-BLMF1 EBV 1.0 2531 NEG 120 1940 12 EBV BLMF1 GLCTLVAML effector T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*02:01 B2M MHCI -2742 chip0420_669972 -2.07 11.31 Chip1 T1D_2 T1D TGTGTGGTGGTCTATGGGGGTTACCAGAAAGTTACCTTT CVVVYGGYQKVTF TRAV12-1*01 TRAJ13*01 36.0 2250.0 TGTGCCAGCAGCCCCCTACTCGACTCCTACAATGAGCAGTTCTTC CASSPLLDSYNEQFF TRBV7-9*01 TRBJ2-1*01 23.0 2010.0 CVVVYGGYQKVTF_CASSPLLDSYNEQFF 1 3249 IGRP-152-160-WLI IGRP 0.56 27 NEG 119 3130 3 HomoSapiens IGRP FLWSVFWLI Naive T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*02:01 B2M MHCI -2743 chip0420_485173 -3.75 8.75 Chip1 T1D_1 T1D TGGGCCAGTAGTCCCCGTGCTAATTCACCCCTCCACTTT WASSPRANSPLHF TRBV19*01 TRBJ1-6*01 2.0 132.0 _WASSPRANSPLHF 1 5037 IGRP-265-273 IGRP 0.73 34 IGRP-265-273 133 4904 2 HomoSapiens IGRP VLFGLGFAI Naive T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*02:01 B2M MHCI -2744 chip0420_430037 10.35 7.19 Chip1 T1D_2 T1D TGTGCAGCGTATGCAGGCAACATGCTCACCTTT CAAYAGNMLTF TRAV29/DV5*01 TRAJ39*01 24.0 2109.0 TGCGCCAGCAGAGCGGGAGCCGGGGATACGCAGTATTTT CASRAGAGDTQYF TRBV10-2*01 TRBJ2-3*01 74.0 4940.0 CAAYAGNMLTF_CASRAGAGDTQYF 18 3428 EBV-BLMF1 EBV 1.0 2531 NEG 136 3292 10 EBV BLMF1 GLCTLVAML effector memory T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*02:01 B2M MHCI -2745 chip0420_297362 10.65 7.86 Chip1 T1D_2 T1D TGTGCTGTGCGTGCACCCTAACTCCCCCTGCCAGACTCATGTTT CAVRAP*c?tPPARLMF TRAV8-6*01 TRAJ31*01 50.0 1983.0 TGCAGCGTGGGGACAGGGGGAACTAATGAAAAACTGTTTTTT CSVGTGGTNEKLFF TRBV29-1*01 TRBJ1-4*01 6.0 103.0 CAVRAP*c?tPPARLMF_CSVGTGGTNEKLFF 1 3402 EBV-BRLF1 EBV 0.92 1264 EBV-BRLF1 159 3243 10 EBV BRLF1 YVLDHLIVV effector memory T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*02:01 B2M MHCI -2746 chip0420_231644 12.74 10.73 Chip1 T1D_2 T1D _ 6746 2674 EBV-BRLF1 EBV 1.0 1264 NEG 124 2550 9 EBV BRLF1 YVLDHLIVV effector memory T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*02:01 B2M MHCI -2747 chip0420_797938 -2.57 10.9 Chip1 T1D_1 T1D _ 6746 5129 HCVNS4B-1807-1816 HCV 0.65 74 NEG 140 4989 3 HCV NS4B LLFNILGGWV Naive T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*02:01 B2M MHCI -2748 chip0420_546373 6.15 12.61 Chip1 T1D_1 T1D _ 6746 4424 M1 FLU 0.76 1250 NEG 131 4293 7 InfluenzaA M1 GILGFVFTL transitional T cells between effector and memory populations PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*02:01 B2M MHCI -2749 chip0420_872916 8.71 10.52 Chip1 T1D_2 T1D TGCAGCTCGCAGGAGGGCGGCTATGGCTACACCTTC CSSQEGGYGYTF TRBV29-1*01 TRBJ1-2*01 29.0 2409.0 _CSSQEGGYGYTF 11 4242 EBV-BLMF1 EBV 0.8 2531 NEG 124 4118 8 EBV BLMF1 GLCTLVAML effector memory T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*02:01 B2M MHCI -2750 chip0420_843291 5.61 10.25 Chip1 T1D_1 T1D _ 6746 4345 EBV-LMP2-FLY EBV 1.0 355 EBV-LMP2-FLY 126 4219 6 EBV LMP2 FLYALALLL central memory T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*02:01 B2M MHCI -2751 chip0420_750218 11.36 7.24 Chip1 T1D_2 T1D TGCAGCGTGGGGACAGGGGGAACTAATGAAAAACTGTTTTTT CSVGTGGTNEKLFF TRBV29-1*01 TRBJ1-4*01 52.0 1622.0 _CSVGTGGTNEKLFF 638 3110 EBV-BLMF1 EBV 0.44 2531 NEG 143 2967 10 EBV BLMF1 GLCTLVAML effector memory T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*02:01 B2M MHCI -2752 chip0420_339395 9.66 10.29 Chip1 T1D_2 T1D TGTGCTCTAAAAAACACCGACAAGCTCATCTTT CALKNTDKLIF TRAV16*01 TRAJ34*01 17.0 2013.0 TGCGCCAGCAGTCAATCGAGAGGGTCGCTCTGGGATACGCAGTATTTT CASSQSRGSLWDTQYF TRBV4-3*01 TRBJ2-3*01 24.0 740.0 CALKNTDKLIF_CASSQSRGSLWDTQYF 5 3061 EBV-BRLF1 EBV 0.96 1264 EBV-BRLF1 156 2905 9 EBV BRLF1 YVLDHLIVV effector memory T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*02:01 B2M MHCI -2753 chip0420_291734 5.56 12.21 Chip1 T1D_2 T1D TGTGCTTTCATCACAGGGGCCGGTGGTCCTAGCTCTGGAGCGCTGCCATTT CAFITGAGGPSSGALPF TRAV38-1*01 TRAJ52*01 51.0 2003.0 TGTGCCAGTTCAGCCGGCAGCTCTGGCTACACCTTC CASSAGSSGYTF TRBV19*01 TRBJ1-2*01 12.0 564.0 CAFITGAGGPSSGALPF_CASSAGSSGYTF 1 3438 M1 FLU 0.88 1250 M1 143 3295 7 InfluenzaA M1 GILGFVFTL transitional T cells between effector and memory populations PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*02:01 B2M MHCI -2754 chip0420_128149 9.18 10.13 Chip1 T1D_2 T1D TGCGCCAGCAGGATGGGGGCCGGGGATACGCAGTATTTT CASRMGAGDTQYF TRBV10-2*01 TRBJ2-3*01 27.0 1430.0 _CASRMGAGDTQYF 90 4869 EBV-BLMF1 EBV 0.83 2531 NEG 135 4734 8 EBV BLMF1 GLCTLVAML effector memory T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*02:01 B2M MHCI -2755 chip0420_223360 15.06 8.86 Chip1 T1D_1 T1D TGTGCCATCAGTGAGGGGACGCTGAGCTCCTACAATGAGCAGTTCTTC CAISEGTLSSYNEQFF TRBV10-3*01 TRBJ2-1*01 24.0 1441.0 _CAISEGTLSSYNEQFF 7 2300 EBV-BRLF1 EBV 0.83 1264 NEG 137 2163 12 EBV BRLF1 YVLDHLIVV effector T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*02:01 B2M MHCI -2756 chip0420_708035 6.11 10.01 Chip1 T1D_1 T1D TGTGCCTCACGCCGGGACGGCACTGAAGCTTTCTTT CASRRDGTEAFF TRBV30*01 TRBJ1-1*01 27.0 2002.0 _CASRRDGTEAFF 2 4427 CVB3-P3A CVB 0.92 77 CVB3-P3A 136 4291 6 CoxsackievirusB P3A GIIYIIYKL central memory T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*02:01 B2M MHCI -2757 chip0420_540821 14.56 10.48 Chip1 T1D_1 T1D TGTGCCAGCAGCCCAGTTAGCGGGTCAACCTACGAGCAGTACTTC CASSPVSGSTYEQYF TRBV3-1*01 TRBJ2-7*01 14.0 488.0 _CASSPVSGSTYEQYF 80 2674 EBV-BLMF1 EBV 0.5 2531 NEG 150 2524 12 EBV BLMF1 GLCTLVAML effector T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*02:01 B2M MHCI -2758 chip0420_370173 10.67 11.01 Chip1 T1D_1 T1D _ 6746 3522 EBV-BLMF1 EBV 0.89 2531 NEG 129 3393 9 EBV BLMF1 GLCTLVAML effector memory T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*02:01 B2M MHCI -2759 chip0420_720456 -1.12 9.89 Chip1 healthy_2 healthy TGTGCTGTGGGTGCGGGCTTCAGATCTATCTTT CAVGAGFRSIF TRAV8-3*01 TRAJ9*01 20.0 1694.0 TGTGCTCTGTTGAGGTGTGGGGAAGCCAAGGAAATCTCATCTTT CALLRCGg?aSQGNLIF TRAV9-2*01 TRAJ42*01 19.0 825.0 0.44 CAVGAGFRSIF_ 1 3464 PREINS-2-10 INS 0.9 37 NEG 142 3322 4 HomoSapiens PREINS ALWMRLLPL Naive T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*02:01 B2M MHCI -2760 chip0420_847401 11.95 8.29 Chip1 T1D_1 T1D TGCAGCGTCGGCTCCAGGGGAACTAATGAAAAACTGTTTTTT CSVGSRGTNEKLFF TRBV29-1*01 TRBJ1-4*01 131.0 7629.0 _CSVGSRGTNEKLFF 283 3087 EBV-BLMF1 EBV 0.6 2531 NEG 139 2948 10 EBV BLMF1 GLCTLVAML effector memory T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*02:01 B2M MHCI -2761 chip0420_494974 7.06 13.23 Chip1 T1D_1 T1D TGTGCCAGCAGTTTCGGCCAGGGCGCAGATACGCAGTATTTT CASSFGQGADTQYF TRBV27*01 TRBJ2-3*01 8.0 345.0 _CASSFGQGADTQYF 1 3700 M1 FLU 0.88 1250 NEG 146 3554 7 InfluenzaA M1 GILGFVFTL transitional T cells between effector and memory populations PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*02:01 B2M MHCI -2762 chip0420_409524 8.51 8.7 Chip1 T1D_1 T1D TGTGCTGCGTGTAACTCTT CAA??tVTL TRAV2*01 TRAJ48*01 1.0 25.0 CAA??tVTL_ 1 7048 EBV-BLMF1 EBV 0.7 2531 EBV-BLMF1 145 6903 8 EBV BLMF1 GLCTLVAML effector memory T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*02:01 B2M MHCI -2763 chip0420_381885 8.76 8.27 Chip1 T1D_1 T1D TGTGCTGTGAGTGATACCGGCCCGAACCTACAAATACATCTTT CAVSDTG??cRTYKYIF TRAV8-6*01 TRAJ40*01 2.0 282.0 CAVSDTG??cRTYKYIF_ 3 2816 EBV-BRLF1 EBV 0.95 1264 EBV-BRLF1 139 2677 8 EBV BRLF1 YVLDHLIVV effector memory T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*02:01 B2M MHCI -2764 chip0420_316278 -2.8 11.16 Chip1 healthy_1 healthy _ 6746 4785 PGT-178 PGT 0.75 1480 PGT-178 138 4647 4 HomoSapiens PGT LLAGIGTVPI Naive T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*02:01 B2M MHCI -2765 chip0420_642622 12.32 13.48 Chip1 T1D_2 T1D _ 6746 1433 EBV-BRLF1 EBV 0.86 1264 NEG 153 1280 11 EBV BRLF1 YVLDHLIVV effector T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*02:01 B2M MHCI -2766 chip0420_295931 9.95 10.31 Chip1 T1D_2 T1D _ 6746 3218 EBV-BLMF1 EBV 0.67 2531 NEG 124 3094 9 EBV BLMF1 GLCTLVAML effector memory T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*02:01 B2M MHCI -2767 chip0420_287538 8.76 11.16 Chip1 T1D_2 T1D TGTGCAATGAGAGTGCAGATGGATAGCAACTATCAGTTAATCTGG CAMRVQMDSNYQLIW TRAV14/DV4*01 TRAJ33*01 48.0 2151.0 CAMRVQMDSNYQLIW_ 1 3558 EBV-BLMF1 EBV 0.67 2531 NEG 134 3424 9 EBV BLMF1 GLCTLVAML effector memory T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*02:01 B2M MHCI -2768 chip0420_158622 -1.56 7.65 Chip1 healthy_1 healthy _ 6746 5257 ZNT8-115-123 ZNT8 0.77 74 ZNT8-115-123 115 5142 3 HomoSapiens ZNT8 LLSLFSLWL Naive T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*02:01 B2M MHCI -2769 chip0420_686529 14.63 10.26 Chip1 T1D_2 T1D TGTGTGGTGAACCTACCTAACGACTACAAGCTCAGCTTT CVVNLPNDYKLSF TRAV12-1*01 TRAJ20*01 35.0 2066.0 CVVNLPNDYKLSF_ 2 2733 EBV-BLMF1 EBV 0.67 2531 NEG 156 2577 12 EBV BLMF1 GLCTLVAML effector T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*02:01 B2M MHCI -2770 chip0420_284701 10.08 9.55 Chip1 T1D_1 T1D TGTGCCAGCAGCCAAAGCCCGGGTGGTACGCAGTATTTT CASSQSPGGTQYF TRBV14*01 TRBJ2-3*01 8.0 449.0 _CASSQSPGGTQYF 94 4701 EBV-BLMF1 EBV 0.62 2531 NEG 140 4561 9 EBV BLMF1 GLCTLVAML effector memory T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*02:01 B2M MHCI -2771 chip0420_87756 -0.86 9.97 Chip1 T1D_1 T1D _ 6746 5393 ZNT8-153-161 ZNT8 0.84 41 ZNT8-153-161 126 5267 3 HomoSapiens ZNT8 VVTGVLVYL Naive T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*02:01 B2M MHCI -2772 chip0420_589454 -0.05 7.93 Chip1 healthy_2 healthy _ 6746 5639 NP225-233 FLU 0.8 23 NP225-233 136 5503 4 InfluenzaA NP ILKGKFQTA Naive T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-B*08:01 B2M MHCI -2773 chip0420_466380 14.33 11.53 Chip1 T1D_2 T1D _ 6746 2243 EBV-BRLF1 EBV 0.89 1264 EBV-BRLF1 129 2114 12 EBV BRLF1 YVLDHLIVV effector T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*02:01 B2M MHCI -2774 chip0420_418903 5.7 10.23 Chip1 T1D_2 T1D TGTGCCAGCAGTCCCCAAGGGGGGGCCAGTGAAGCTTTCTTT CASSPQGGASEAFF TRBV6-1*01 TRBJ1-1*01 12.0 375.0 _CASSPQGGASEAFF 3 3504 EBV-LMP2-FLY EBV 0.62 355 NEG 141 3363 6 EBV LMP2 FLYALALLL central memory T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*02:01 B2M MHCI -2775 chip0420_795726 11.34 10.95 Chip1 T1D_1 T1D TGTGCCACCCAACAGGGGAGGGACAGTCAGCCCCAGCATTTT CATQQGRDSQPQHF TRBV28*01 TRBJ1-5*01 23.0 1314.0 _CATQQGRDSQPQHF 52 3439 EBV-BLMF1 EBV 0.64 2531 NEG 162 3277 9 EBV BLMF1 GLCTLVAML effector memory T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*02:01 B2M MHCI -2776 chip0420_752072 6.05 12.73 Chip1 T1D_1 T1D _ 6746 4235 M1 FLU 0.94 1250 M1 165 4070 7 InfluenzaA M1 GILGFVFTL transitional T cells between effector and memory populations PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*02:01 B2M MHCI -2777 chip0420_728861 11.05 10.64 Chip1 T1D_1 T1D TGTGCTCTCTATAACACCGACAAGCTCATCTTT CALYNTDKLIF TRAV9-2*01 TRAJ34*01 22.0 2039.0 CALYNTDKLIF_ 10 4581 EBV-BLMF1 EBV 1.0 2531 EBV-BLMF1 129 4452 9 EBV BLMF1 GLCTLVAML effector memory T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*02:01 B2M MHCI -2778 chip0420_501707 -1.15 8.91 Chip1 T1D_1 T1D _ 6746 7454 M1 FLU 0.69 1250 NEG 136 7318 3 InfluenzaA M1 GILGFVFTL Naive T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*02:01 B2M MHCI -2779 chip0420_201183 9.22 9.12 Chip1 T1D_3 T1D _ 6746 3377 BZLF1-190-197 EBV 0.67 2156 NEG 123 3254 8 EBV BZLF1 RAKFKQLL effector memory T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-B*08:01 B2M MHCI -2780 chip0420_141316 13.35 12.47 Chip1 T1D_1 T1D TGCAGCGTCGGCTCCAGGGGAACTAATGAAAAACTGTTTTTT CSVGSRGTNEKLFF TRBV29-1*01 TRBJ1-4*01 132.0 6885.0 _CSVGSRGTNEKLFF 283 2162 EBV-BLMF1 EBV 0.5 2531 NEG 132 2030 11 EBV BLMF1 GLCTLVAML effector T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*02:01 B2M MHCI -2781 chip0420_816193 6.76 13.8 Chip1 T1D_1 T1D TGTGCCAGTAGTATTAGGAGCTCCTACGAGCAGTACTTC CASSIRSSYEQYF TRBV19*01 TRBJ2-7*01 2.0 135.0 _CASSIRSSYEQYF 36 4090 M1 FLU 0.74 1250 M1 127 3963 7 InfluenzaA M1 GILGFVFTL transitional T cells between effector and memory populations PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*02:01 B2M MHCI -2782 chip0420_144746 -3.43 12.3 Chip1 T1D_1 T1D _ 6746 5021 ZNT8-16-24 ZNT8 0.96 39 ZNT8-16-24 140 4881 1 HomoSapiens ZNT8 KMYAFTLES Naive T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*02:01 B2M MHCI -2783 chip0420_173768 14.0 11.12 Chip1 T1D_2 T1D TGTGTGGTGAACGGCAGGGATAGCAGCTATAAATTGATCTTC CVVNGRDSSYKLIF TRAV12-1*01 TRAJ12*01 1.0 10.0 TGTGCCAGCCGCTCGGGACTAGTCGCCCCCGGGGAGTTGTTTTTT CASRSGLVAPGELFF TRBV2*01 TRBJ2-2*01 2.0 48.0 CVVNGRDSSYKLIF_CASRSGLVAPGELFF 1 2561 EBV-BLMF1 EBV 0.5 2531 NEG 131 2430 12 EBV BLMF1 GLCTLVAML effector T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*02:01 B2M MHCI -2784 chip0420_488181 12.58 7.87 Chip1 T1D_2 T1D _ 6746 2662 EBV-BRLF1 EBV 0.98 1264 EBV-BRLF1 158 2504 10 EBV BRLF1 YVLDHLIVV effector memory T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*02:01 B2M MHCI -2785 chip0420_103464 6.03 14.01 Chip1 T1D_1 T1D TGTGCAATGAGAGAGGATAATGCAGGCAACATGCTCACCTTT CAMREDNAGNMLTF TRAV14/DV4*01 TRAJ39*01 43.0 2135.0 TGTGCCAGTAGTATAATCGATAGGACTCTTGGAACAGATACGCAGTATTTT CASSIIDRTLGTDTQYF TRBV19*01 TRBJ2-3*01 18.0 643.0 CAMREDNAGNMLTF_CASSIIDRTLGTDTQYF 2 4925 M1 FLU 0.84 1250 M1 133 4792 7 InfluenzaA M1 GILGFVFTL transitional T cells between effector and memory populations PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*02:01 B2M MHCI -2786 chip0420_553141 -1.37 6.74 Chip1 T1D_3 T1D TGTGCTCTAATACAGTTAGGTGCTGGCAACAACCGTAAGCTGATTTGG CALIQLGAGNNRKLIW TRAV16*01 TRAJ38*01 68.0 2330.0 CALIQLGAGNNRKLIW_ 1 5460 GAD2-VSA-10 GAD65 0.66 21 GAD2-VSA-10 132 5328 3 HomoSapiens GAD2 VSATAGTTVY Naive T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*01:01 B2M MHCI -2787 chip0420_655336 14.26 9.97 Chip1 T1D_2 T1D _ 6746 3244 EBV-BRLF1 EBV 1.0 1264 EBV-BRLF1 144 3100 12 EBV BRLF1 YVLDHLIVV effector T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*02:01 B2M MHCI -2788 chip0420_248597 -2.97 13.19 Chip1 T1D_2 T1D TGTGCATTTTCTATATCTAACTTTGGAAATGAGAAATTAACCTTT CAFSISNFGNEKLTF TRAV12-3*01 TRAJ48*01 52.0 2492.0 CAFSISNFGNEKLTF_ 1 3033 PGT-178 PGT 0.55 1480 NEG 132 2901 1 HomoSapiens PGT LLAGIGTVPI Naive T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*02:01 B2M MHCI -2789 chip0420_119958 13.45 11.98 Chip1 T1D_2 T1D TGTGCCAGCAAGGGGATCGATGGCTACACCTTC CASKGIDGYTF TRBV13*01 TRBJ1-2*01 17.0 1142.0 _CASKGIDGYTF 2 1942 EBV-BRLF1 EBV 1.0 1264 EBV-BRLF1 130 1812 12 EBV BRLF1 YVLDHLIVV effector T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*02:01 B2M MHCI -2790 chip0420_79197 -4.04 8.39 Chip1 T1D_1 T1D TGTGCCGTTGACGCGGGCAATAAGGGAGGCTTCAAAACTATCTTT CAVDAGNKGGFKTIF TRAV12-2*01 TRAJ9*01 2.0 342.0 TGTGCTGTGCCTTCGGGCAATTTCTTCTGGTTCTGCAAGGCAACTGACCTTT CAVPSGNFtt??ctGSARQLTF TRAV20*01 TRAJ22*01 2.0 10.0 0.5 CAVDAGNKGGFKTIF_ 1 5559 PGT-178 PGT 0.59 1480 PGT-178 124 5435 2 HomoSapiens PGT LLAGIGTVPI Naive T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*02:01 B2M MHCI -2791 chip0420_60524 10.62 11.0 Chip1 T1D_1 T1D TGTGCCAGCAGCACGGGACAGCTATCGAACACCGGGGAGCTGTTTTTT CASSTGQLSNTGELFF TRBV9*01 TRBJ2-2*01 15.0 684.0 _CASSTGQLSNTGELFF 82 3004 EBV-BLMF1 EBV 0.6 2531 NEG 141 2863 9 EBV BLMF1 GLCTLVAML effector memory T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*02:01 B2M MHCI -2792 chip0420_874662 -3.06 9.45 Chip1 T1D_1 T1D _ 6746 5298 PTPRN-805-813 PTPRN 0.68 11 PTPRN-805-813 134 5164 2 HomoSapiens PTPRN VIVMLTPLV Naive T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*02:01 B2M MHCI -2793 chip0420_676593 10.38 11.39 Chip1 T1D_1 T1D _ 6746 3180 EBV-BLMF1 EBV 0.8 2531 NEG 152 3028 9 EBV BLMF1 GLCTLVAML effector memory T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*02:01 B2M MHCI -2794 chip0420_402739 14.14 8.97 Chip1 T1D_1 T1D _ 6746 2779 EBV-BLMF1 EBV 0.71 2531 NEG 135 2644 12 EBV BLMF1 GLCTLVAML effector T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*02:01 B2M MHCI -2795 chip0420_61089 -3.77 10.07 Chip1 T1D_1 T1D TGTGCCAGAGGGGGAAACACACCTCTTGTCTTT CARGGNTPLVF TRAV12-1*01 TRAJ29*01 25.0 2108.0 TGTGCCAGCAGTACAGGGTGGGGGGTCGATGAGCAGTTTCTT CASSTGWGVDEQFL TRBV6-2*01,TRBV6-3*01 TRBJ2-1*01 3.0 197.0 CARGGNTPLVF_CASSTGWGVDEQFL 1 5494 PGT-178 PGT 0.81 1480 PGT-178 142 5352 2 HomoSapiens PGT LLAGIGTVPI Naive T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*02:01 B2M MHCI -2796 chip0420_382825 10.31 7.19 Chip1 T1D_2 T1D TGCGCCAGCAGGATGGGGGCCGGGGATACGCAGTATTTT CASRMGAGDTQYF TRBV10-2*01 TRBJ2-3*01 26.0 2212.0 _CASRMGAGDTQYF 90 3656 EBV-BLMF1 EBV 0.56 2531 NEG 135 3521 10 EBV BLMF1 GLCTLVAML effector memory T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*02:01 B2M MHCI -2797 chip0420_464889 6.16 13.34 Chip1 T1D_1 T1D _ 6746 3558 M1 FLU 0.61 1250 NEG 121 3437 7 InfluenzaA M1 GILGFVFTL transitional T cells between effector and memory populations PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*02:01 B2M MHCI -2798 chip0420_872875 9.01 8.02 Chip1 T1D_1 T1D TGCAGCGTCGGCTCCAGGGGAACTAATGAAAAACTGTTTTTT CSVGSRGTNEKLFF TRBV29-1*01 TRBJ1-4*01 61.0 3264.0 _CSVGSRGTNEKLFF 283 2604 EBV-BLMF1 EBV 0.7 2531 NEG 130 2474 8 EBV BLMF1 GLCTLVAML effector memory T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*02:01 B2M MHCI -2799 chip0420_698751 15.51 10.95 Chip1 T1D_1 T1D _ 6746 2966 EBV-BRLF1 EBV 0.94 1264 EBV-BRLF1 121 2845 12 EBV BRLF1 YVLDHLIVV effector T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*02:01 B2M MHCI -2800 chip0420_599767 9.28 9.11 Chip1 T1D_2 T1D TGCGCCAGCAGAGCGGGAGCCGGGGATACGCAGTATTTT CASRAGAGDTQYF TRBV10-2*01 TRBJ2-3*01 45.0 2911.0 _CASRAGAGDTQYF 59 3508 EBV-BLMF1 EBV 1.0 2531 NEG 156 3352 8 EBV BLMF1 GLCTLVAML effector memory T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*02:01 B2M MHCI -2801 chip0420_326573 -3.31 9.41 Chip1 T1D_1 T1D TGCGCCAGCAGCCCTTCAGGGAACAAGCAGTACTTC CASSPSGNKQYF TRBV4-1*01 TRBJ2-7*01 13.0 692.0 _CASSPSGNKQYF 1 4742 MART1-ALA MART1 0.41 269 NEG 125 4617 2 HomoSapiens MART1 ALAGIGILTV Naive T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*02:01 B2M MHCI -2802 chip0420_557086 15.73 9.65 Chip1 T1D_1 T1D TGCGGCACAGAGGAACCTAACGACTACAAGCTCAGCTTT CGTEEPNDYKLSF TRAV30*01 TRAJ20*01 19.0 1717.0 CGTEEPNDYKLSF_ 22 2692 EBV-BLMF1 EBV 0.45 2531 EBV-BLMF1 127 2565 12 EBV BLMF1 GLCTLVAML effector T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*02:01 B2M MHCI -2803 chip0420_854109 5.95 11.01 Chip1 T1D_1 T1D _ 6746 5924 M1 FLU 0.69 1250 M1 134 5790 6 InfluenzaA M1 GILGFVFTL central memory T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*02:01 B2M MHCI -2804 chip0420_804031 5.44 9.46 Chip1 T1D_2 T1D TGTGCTACGGCGGGGGATTCCGGATACAGCACCCTCACCTTT CATAGDSGYSTLTF TRAV17*01 TRAJ11*01 60.0 2348.0 CATAGDSGYSTLTF_ 1 3909 EBV-LMP2-FLY EBV 0.82 355 NEG 135 3774 6 EBV LMP2 FLYALALLL central memory T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*02:01 B2M MHCI -2805 chip0420_798635 -4.03 8.09 Chip1 T1D_1 T1D TGTGCCAGCAGTCCCGAAAGGGGAAGAAACACTGAAGCTTTCTTT CASSPERGRNTEAFF TRBV25-1*01 TRBJ1-1*01 27.0 978.0 _CASSPERGRNTEAFF 1 6457 PGT-178 PGT 0.65 1480 PGT-178 139 6318 2 HomoSapiens PGT LLAGIGTVPI Naive T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*02:01 B2M MHCI -2806 chip0420_833134 -1.86 10.48 Chip1 T1D_1 T1D TGTGCCAGTGGCTTATCGGGGGGGGATACGCAGTATTTT CASGLSGGDTQYF TRBV19*01 TRBJ2-3*01 4.0 164.0 _CASGLSGGDTQYF 1 4496 PREINS-2-10 INS 0.93 37 PREINS-2-10 120 4376 3 HomoSapiens PREINS ALWMRLLPL Naive T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*02:01 B2M MHCI -2807 chip0420_757672 6.92 13.54 Chip1 T1D_1 T1D TGTGCCAGTTGTGTCGGGGCAGGGGAGACCCGGTACTTC CASCVGAGETRYF TRBV19*01 TRBJ2-5*01 13.0 816.0 _CASCVGAGETRYF 1 3305 M1 FLU 0.95 1250 M1 121 3184 7 InfluenzaA M1 GILGFVFTL transitional T cells between effector and memory populations PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*02:01 B2M MHCI -2808 chip0420_27166 12.0 8.97 Chip1 T1D_2 T1D TGTGCCAGCAGCTCGGGACTAGTCGCCCCCGGGGAGCTGTTTTTT CASSSGLVAPGELFF TRBV2*01 TRBJ2-2*01 63.0 3509.0 _CASSSGLVAPGELFF 133 2858 EBV-BLMF1 EBV 0.62 2531 NEG 136 2722 10 EBV BLMF1 GLCTLVAML effector memory T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*02:01 B2M MHCI -2809 chip0420_670091 9.02 9.31 Chip1 T1D_1 T1D TGTGTGGTGAACGGGGGAGATAGCAGCTATAAATTGATCTTC CVVNGGDSSYKLIF TRAV12-1*01 TRAJ12*01 5.0 383.0 TGTGCCAGCAGTTCGGGACAGGTACTTCCCAATGAGCAGTTCTTC CASSSGQVLPNEQFF TRBV2*01 TRBJ2-1*01 14.0 1068.0 CVVNGGDSSYKLIF_CASSSGQVLPNEQFF 31 4281 EBV-BLMF1 EBV 0.55 2531 NEG 149 4132 8 EBV BLMF1 GLCTLVAML effector memory T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*02:01 B2M MHCI -2810 chip0420_231014 5.85 12.69 Chip1 T1D_1 T1D TGTGCCAGTAGTATTCGCTCTGCCTACGAGCAGTACTTC CASSIRSAYEQYF TRBV19*01 TRBJ2-7*01 58.0 3829.0 _CASSIRSAYEQYF 11 6605 M1 FLU 0.89 1250 M1 121 6484 7 InfluenzaA M1 GILGFVFTL transitional T cells between effector and memory populations PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*02:01 B2M MHCI -2811 chip0420_866577 -1.26 10.04 Chip1 T1D_1 T1D _ 6746 5536 PGT-178 PGT 0.71 1480 NEG 131 5405 3 HomoSapiens PGT LLAGIGTVPI Naive T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*02:01 B2M MHCI -2812 chip0420_336900 12.35 10.1 Chip1 T1D_1 T1D TGTGCCAGCAGTGACGGTCGGGCCCACCCGGGGACCCAGTACTTC CASSDGRAHPGTQYF TRBV2*01 TRBJ2-5*01 9.0 528.0 _CASSDGRAHPGTQYF 1 4070 EBV-BLMF1 EBV 0.45 2531 NEG 130 3940 9 EBV BLMF1 GLCTLVAML effector memory T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*02:01 B2M MHCI -2813 chip0420_868938 9.63 8.8 Chip1 T1D_1 T1D _ 6746 2919 EBV-BLMF1 EBV 0.54 2531 NEG 129 2790 8 EBV BLMF1 GLCTLVAML effector memory T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*02:01 B2M MHCI -2814 chip0420_366904 11.08 10.81 Chip1 T1D_1 T1D TGCAGCGTCGGCTCCAGGGGAACTAATGAAAAACTGTTTTTT CSVGSRGTNEKLFF TRBV29-1*01 TRBJ1-4*01 108.0 5066.0 _CSVGSRGTNEKLFF 283 2966 EBV-BLMF1 EBV 0.48 2531 NEG 120 2846 9 EBV BLMF1 GLCTLVAML effector memory T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*02:01 B2M MHCI -2815 chip0420_856881 -3.54 9.5 Chip1 T1D_1 T1D _ 6746 5110 PGT-178 PGT 0.49 1480 PGT-178 128 4982 2 HomoSapiens PGT LLAGIGTVPI Naive T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*02:01 B2M MHCI -2816 chip0420_499811 12.99 8.17 Chip1 T1D_1 T1D TGTGCTCTAGGAGAACGGCCAGGAGGAAGCTACATACCTACATTT CALGERPGGSYIPTF TRAV6*01 TRAJ6*01 3.0 120.0 TGTGCCAGCAGTGCCGGTCGGGTCCACCCGGGGACCCAGTACTTC CASSAGRVHPGTQYF TRBV2*01 TRBJ2-5*01 92.0 3805.0 CALGERPGGSYIPTF_CASSAGRVHPGTQYF 1 3252 EBV-BLMF1 EBV 0.75 2531 NEG 134 3118 10 EBV BLMF1 GLCTLVAML effector memory T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*02:01 B2M MHCI -2817 chip0420_804242 9.28 7.5 Chip1 T1D_2 T1D TGCAGCGTGGGGACAGGGGGAACTAATGAAAAACTGTTTTTT CSVGTGGTNEKLFF TRBV29-1*01 TRBJ1-4*01 90.0 4041.0 _CSVGTGGTNEKLFF 638 4946 EBV-BLMF1 EBV 0.5 2531 NEG 150 4796 8 EBV BLMF1 GLCTLVAML effector memory T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*02:01 B2M MHCI -2818 chip0420_603833 11.84 7.9 Chip1 T1D_2 T1D TGCAGCGTGGGGACAGGGGGAACTAATGAAAAACTGTTTTTT CSVGTGGTNEKLFF TRBV29-1*01 TRBJ1-4*01 139.0 7632.0 _CSVGTGGTNEKLFF 638 3003 EBV-BLMF1 EBV 0.62 2531 NEG 132 2871 10 EBV BLMF1 GLCTLVAML effector memory T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*02:01 B2M MHCI -2819 chip0420_253651 11.42 12.16 Chip1 T1D_1 T1D TGTGCCAGCAGCCCAGTTAGCGGGTCAACCTACGAGCAGTACTTC CASSPVSGSTYEQYF TRBV3-1*01 TRBJ2-7*01 2.0 25.0 _CASSPVSGSTYEQYF 80 2754 EBV-BLMF1 EBV 0.87 2531 NEG 148 2606 9 EBV BLMF1 GLCTLVAML effector memory T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*02:01 B2M MHCI -2820 chip0420_115759 14.92 9.51 Chip1 T1D_1 T1D TGTGCAATGAGCGGGTCTAACTTTGGACATGAGAAATTAACCTTT CAMSGSNFGHEKLTF TRAV12-3*01 TRAJ48*01 38.0 1391.0 TGTGCCAACAGTGCCGGGACAGTTGCACCCGGGGAGCTGTTTTTT CANSAGTVAPGELFF TRBV2*01 TRBJ2-2*01 20.0 1479.0 CAMSGSNFGHEKLTF_CANSAGTVAPGELFF 1 2600 EBV-BLMF1 EBV 0.75 2531 NEG 125 2475 12 EBV BLMF1 GLCTLVAML effector T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*02:01 B2M MHCI -2821 chip0420_567329 16.15 10.21 Chip1 T1D_2 T1D TGTGTGGTGAACGGCAGGGATAGCAGCTATAAATTAATCTTC CVVNGRDSSYKLIF TRAV12-1*01 TRAJ12*01 47.0 2039.0 TGTGCCAGCAGCTCGGGACTAGTCGCCCCCGGGGAGCTGTTTTTT CASSSGLVAPGELFF TRBV2*01 TRBJ2-2*01 75.0 4967.0 CVVNGRDSSYKLIF_CASSSGLVAPGELFF 98 2114 EBV-BLMF1 EBV 0.46 2531 NEG 141 1973 12 EBV BLMF1 GLCTLVAML effector T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*02:01 B2M MHCI -2822 chip0420_221171 5.94 13.88 Chip1 T1D_1 T1D TGTGCCAGTAGTATCAGCTCCACAGATACGCAGTATGTT CASSISSTDTQYV TRBV19*01 TRBJ2-3*01 4.0 194.0 _CASSISSTDTQYV 1 3827 M1 FLU 0.67 1250 NEG 121 3706 7 InfluenzaA M1 GILGFVFTL transitional T cells between effector and memory populations PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*02:01 B2M MHCI -2823 chip0420_595227 0.77 8.58 Chip1 T1D_1 T1D _ 6746 7006 MART1-ALA MART1 0.85 269 MART1-ALA 128 6878 4 HomoSapiens MART1 ALAGIGILTV Naive T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*02:01 B2M MHCI -2824 chip0420_408145 6.53 14.45 Chip1 T1D_1 T1D TGTGCCAGTAGTATAAATGGGGGCCGGAGGGATGGCTACACCTTC CASSINGGRRDGYTF TRBV19*01 TRBJ1-2*01 40.0 1947.0 _CASSINGGRRDGYTF 32 3620 M1 FLU 0.89 1250 M1 125 3495 7 InfluenzaA M1 GILGFVFTL transitional T cells between effector and memory populations PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*02:01 B2M MHCI -2825 chip0420_508737 8.89 11.32 Chip1 T1D_2 T1D TGTGCCTGGAGTGACCAACTAGGGGCGGCACGGGAGCTGTTTTTT CAWSDQLGAARELFF TRBV30*01 TRBJ2-2*01 10.0 533.0 _CAWSDQLGAARELFF 7 5647 EBV-BRLF1 EBV 0.93 1264 EBV-BRLF1 147 5500 9 EBV BRLF1 YVLDHLIVV effector memory T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*02:01 B2M MHCI -2826 chip0420_540736 9.94 10.57 Chip1 T1D_2 T1D TGTGCCGTTAAGGAGACAGGCAAACTAATCTTT CAVKETGKLIF TRAV8-1*01 TRAJ37*01 1.0 206.0 TGTGCCAGCACCAGTGGATCGGGCTTTGAGCAGTACTTC CASTSGSGFEQYF TRBV7-9*01 TRBJ2-7*01 9.0 325.0 CAVKETGKLIF_CASTSGSGFEQYF 3 2755 EBV-BRLF1 EBV 1.0 1264 EBV-BRLF1 153 2602 9 EBV BRLF1 YVLDHLIVV effector memory T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*02:01 B2M MHCI -2827 chip0420_334609 8.55 11.68 Chip1 T1D_1 T1D TGTGCCGTGAAGGACACCGACAAGCTCATCTTT CAVKDTDKLIF TRAV8-1*01 TRAJ34*01 8.0 876.0 CAVKDTDKLIF_ 56 4391 EBV-BRLF1 EBV 0.92 1264 EBV-BRLF1 152 4239 7 EBV BRLF1 YVLDHLIVV transitional T cells between effector and memory populations PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*02:01 B2M MHCI -2828 chip0420_523753 10.7 11.34 Chip1 T1D_1 T1D TGCAGCGTCGGCTCCAGGGGAACTAATGAAAAACTGTTTTTT CSVGSRGTNEKLFF TRBV29-1*01 TRBJ1-4*01 22.0 1308.0 _CSVGSRGTNEKLFF 283 3160 EBV-BLMF1 EBV 0.55 2531 NEG 137 3023 9 EBV BLMF1 GLCTLVAML effector memory T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*02:01 B2M MHCI -2829 chip0420_224267 6.37 10.14 Chip1 T1D_2 T1D TGTACCAGCAGCCGACAGGGAGGGAAGGATGGCTACACCTTC CTSSRQGGKDGYTF TRBV6-1*01 TRBJ1-2*01 10.0 650.0 _CTSSRQGGKDGYTF 1 4732 EBV-LMP2-FLY EBV 0.88 355 EBV-LMP2-FLY 129 4603 6 EBV LMP2 FLYALALLL central memory T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*02:01 B2M MHCI -2830 chip0420_220617 6.41 12.27 Chip1 healthy_1 healthy _ 6746 4564 M1 FLU 0.89 1250 M1 138 4426 7 InfluenzaA M1 GILGFVFTL transitional T cells between effector and memory populations PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*02:01 B2M MHCI -2831 chip0420_404616 10.84 10.4 Chip1 T1D_1 T1D TGTGCAGAGGCGGCCAACCAGGCAGGAACTGCTCTGATCTTT CAEAANQAGTALIF TRAV5*01 TRAJ15*01 36.0 2113.0 TGTGCCAGCAGCCAAAGCCCGGGTGGTACGCAGTATTTT CASSQSPGGTQYF TRBV14*01 TRBJ2-3*01 1.0 85.0 CAEAANQAGTALIF_CASSQSPGGTQYF 9 4313 EBV-BLMF1 EBV 0.61 2531 NEG 163 4150 9 EBV BLMF1 GLCTLVAML effector memory T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*02:01 B2M MHCI -2832 chip0420_615190 15.25 10.15 Chip1 T1D_1 T1D TGTGCCAGCAGCCCAGTTAGCGGGTCAACCTACGAGCAGTACTTC CASSPVSGSTYEQYF TRBV3-1*01 TRBJ2-7*01 2.0 58.0 _CASSPVSGSTYEQYF 80 3308 EBV-BLMF1 EBV 0.82 2531 EBV-BLMF1 125 3183 12 EBV BLMF1 GLCTLVAML effector T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*02:01 B2M MHCI -2833 chip0420_477994 10.95 12.51 Chip1 T1D_2 T1D TGTGCCAGCAGCAGAAGGACCCTAAACTCTGGGGCCAACGTCCTGACTTTC CASSRRTLNSGANVLTF TRBV13*01 TRBJ2-6*01 17.0 840.0 _CASSRRTLNSGANVLTF 9 2333 EBV-BRLF1 EBV 0.9 1264 EBV-BRLF1 137 2196 11 EBV BRLF1 YVLDHLIVV effector T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*02:01 B2M MHCI -2834 chip0420_644946 13.68 8.01 Chip1 T1D_2 T1D TGTGTGGTGAACGGCAGGGATAGCAGCTATAAATTGATCTTC CVVNGRDSSYKLIF TRAV12-1*01 TRAJ12*01 55.0 2362.0 CVVNGRDSSYKLIF_ 17 2584 EBV-BLMF1 EBV 0.75 2531 NEG 131 2453 10 EBV BLMF1 GLCTLVAML effector memory T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*02:01 B2M MHCI -2835 chip0420_209838 -2.94 8.72 Chip1 T1D_1 T1D _ 6746 5603 PGT-178 PGT 0.83 1480 PGT-178 130 5473 2 HomoSapiens PGT LLAGIGTVPI Naive T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*02:01 B2M MHCI -2836 chip0420_546514 12.4 11.38 Chip1 T1D_2 T1D TGTGCCAGCAGCTCGGGACTAGTCGCCCCCGGGGAGCTGTTTTTT CASSSGLVAPGELFF TRBV2*01 TRBJ2-2*01 22.0 1729.0 _CASSSGLVAPGELFF 133 2667 EBV-BLMF1 EBV 0.67 2531 NEG 145 2522 9 EBV BLMF1 GLCTLVAML effector memory T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*02:01 B2M MHCI -2837 chip0420_577106 -0.87 10.27 Chip1 T1D_1 T1D _ 6746 5589 MART1-ALA MART1 0.55 269 MART1-ALA 147 5442 3 HomoSapiens MART1 ALAGIGILTV Naive T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*02:01 B2M MHCI -2838 chip0420_378671 12.84 10.7 Chip1 T1D_1 T1D _ 6746 2837 EBV-BLMF1 EBV 0.83 2531 NEG 132 2705 9 EBV BLMF1 GLCTLVAML effector memory T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*02:01 B2M MHCI -2839 chip0420_755285 7.71 10.38 Chip1 T1D_2 T1D TGTGTGGTGGCCGCATCAGGAGGAAGCTACATACCTACATTT CVVAASGGSYIPTF TRAV12-1*01 TRAJ6*01 28.0 2010.0 CVVAASGGSYIPTF_ 1 5546 EBV-LMP1-2 EBV 0.55 41 NEG 167 5379 7 EBV LMP1 YLQQNWWTL transitional T cells between effector and memory populations PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*02:01 B2M MHCI -2840 chip0420_562667 -3.4 8.64 Chip1 T1D_2 T1D TGTTCCGTTTCTGCCCGGTAACCAGTTCTATTTT CSVSAcg??gtNQFYF TRAV27*01 TRAJ49*01 3.0 437.0 CSVSAcg??gtNQFYF_ 1 5946 PGT-178 PGT 0.48 1480 NEG 129 5817 2 HomoSapiens PGT LLAGIGTVPI Naive T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*02:01 B2M MHCI -2841 chip0420_460222 10.02 7.3 Chip1 T1D_1 T1D _ 6746 4252 EBV-BLMF1 EBV 0.67 2531 NEG 134 4118 10 EBV BLMF1 GLCTLVAML effector memory T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*02:01 B2M MHCI -2842 chip0420_454465 12.86 7.12 Chip1 T1D_1 T1D TGTGCCAGCAGTGACGGTCGGGTCCACCCGGGGACCCAGTACTTC CASSDGRVHPGTQYF TRBV2*01 TRBJ2-5*01 39.0 2856.0 _CASSDGRVHPGTQYF 24 4072 EBV-BLMF1 EBV 0.64 2531 NEG 144 3928 10 EBV BLMF1 GLCTLVAML effector memory T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*02:01 B2M MHCI -2843 chip0420_97642 6.53 12.6 Chip1 healthy_1 healthy TGTGCCAGTAGTATACGGGCAGCCTACGAGCAGTACTTC CASSIRAAYEQYF TRBV19*01 TRBJ2-7*01 21.0 1025.0 _CASSIRAAYEQYF 2 4220 M1 FLU 1.0 1250 M1 122 4098 7 InfluenzaA M1 GILGFVFTL transitional T cells between effector and memory populations PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*02:01 B2M MHCI -2844 chip0420_744335 14.74 10.18 Chip1 T1D_1 T1D _ 6746 2401 EBV-BRLF1 EBV 0.84 1264 EBV-BRLF1 138 2263 12 EBV BRLF1 YVLDHLIVV effector T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*02:01 B2M MHCI -2845 chip0420_616639 11.85 6.87 Chip1 T1D_1 T1D TGTGCCAGCAGTATTCGAGCGGGAGGGGCCTACGAGCAGTACTTC CASSIRAGGAYEQYF TRBV28*01 TRBJ2-7*01 25.0 1318.0 _CASSIRAGGAYEQYF 3 4737 EBV-LMP1-1 EBV 0.72 237 EBV-LMP1-1 145 4592 10 EBV LMP1 YLLEMLWRL effector memory T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*02:01 B2M MHCI -2846 chip0420_596496 12.83 10.59 Chip1 T1D_2 T1D TGTGCTGTGAGTGATCGGGATGGCGGCTTCAAAACTATCTTT CAVSDRDGGFKTIF TRAV8-4*01 TRAJ9*01 10.0 647.0 TGCAGCGTGGGGACAGGGGGAACTAATGAAAAACTGTTTTTT CSVGTGGTNEKLFF TRBV29-1*01 TRBJ1-4*01 160.0 7430.0 CAVSDRDGGFKTIF_CSVGTGGTNEKLFF 1 3724 EBV-BLMF1 EBV 0.78 2531 NEG 108 3616 9 EBV BLMF1 GLCTLVAML effector memory T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*02:01 B2M MHCI -2847 chip0420_1346 11.91 8.45 Chip1 T1D_1 T1D TGTGCCAGCAGCACGGGACAGCTATCGAACACCGGGGAGCTGTTTTTT CASSTGQLSNTGELFF TRBV9*01 TRBJ2-2*01 31.0 1791.0 _CASSTGQLSNTGELFF 82 2246 EBV-BLMF1 EBV 0.92 2531 NEG 138 2108 10 EBV BLMF1 GLCTLVAML effector memory T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*02:01 B2M MHCI -2848 chip0420_658798 12.44 6.96 Chip1 T1D_2 T1D TGTCCTTTGGAATGGCTCCCTCAACACACGCCAACTCATCTTT CPLEWLP??cNTRQLIF TRAV2*01 TRAJ37*01 4.0 254.0 CPLEWLP??cNTRQLIF_ 1 3412 EBV-BRLF1 EBV 0.93 1264 EBV-BRLF1 139 3273 10 EBV BRLF1 YVLDHLIVV effector memory T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*02:01 B2M MHCI -2849 chip0420_466061 11.26 10.63 Chip1 T1D_1 T1D _ 6746 3985 EBV-BLMF1 EBV 0.57 2531 NEG 146 3839 9 EBV BLMF1 GLCTLVAML effector memory T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*02:01 B2M MHCI -2850 chip0420_373315 15.15 12.83 Chip1 T1D_1 T1D TGTGCCAGCAGTCCGGACCAAACTAGCTCCTACAATGAGCAGTTCTTC CASSPDQTSSYNEQFF TRBV27*01 TRBJ2-1*01 1.0 26.0 _CASSPDQTSSYNEQFF 47 2081 EBV-BRLF1 EBV 0.73 1264 EBV-BRLF1 132 1949 12 EBV BRLF1 YVLDHLIVV effector T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*02:01 B2M MHCI -2851 chip0420_872915 10.16 10.46 Chip1 T1D_1 T1D TGTGCCAGCAGCCCAGTTAGCGGGTCAACCTACGAGCAGTACTTC CASSPVSGSTYEQYF TRBV3-1*01 TRBJ2-7*01 16.0 826.0 _CASSPVSGSTYEQYF 80 4125 EBV-BLMF1 EBV 0.65 2531 NEG 126 3999 9 EBV BLMF1 GLCTLVAML effector memory T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*02:01 B2M MHCI -2852 chip0420_690944 12.93 10.88 Chip1 T1D_2 T1D TGTGCTTCCCTAACCCCGGGGGCTTCCAAGATAATCTTT CASLTPGASKIIF TRAV8-6*01 TRAJ3*01 22.0 2037.0 TGTGCCAGCAGCTCGGGACTAGTCGCCCCCGGGGAGCTGTTTTTT CASSSGLVAPGELFF TRBV2*01 TRBJ2-2*01 23.0 1412.0 CASLTPGASKIIF_CASSSGLVAPGELFF 38 3031 EBV-BLMF1 EBV 0.62 2531 NEG 145 2886 9 EBV BLMF1 GLCTLVAML effector memory T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*02:01 B2M MHCI -2853 chip0420_287376 10.49 11.57 Chip1 T1D_1 T1D TGCAGCGTCGGCTCCAGGGGAACTAATGAAAAACTGTTTTTT CSVGSRGTNEKLFF TRBV29-1*01 TRBJ1-4*01 44.0 2152.0 _CSVGSRGTNEKLFF 283 4258 EBV-BLMF1 EBV 0.63 2531 NEG 134 4124 9 EBV BLMF1 GLCTLVAML effector memory T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*02:01 B2M MHCI -2854 chip0420_553273 12.45 13.16 Chip1 T1D_2 T1D _ 6746 1583 EBV-BRLF1 EBV 0.94 1264 EBV-BRLF1 131 1452 11 EBV BRLF1 YVLDHLIVV effector T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*02:01 B2M MHCI -2855 chip0420_494047 14.34 10.12 Chip1 T1D_1 T1D _ 6746 2570 EBV-BRLF1 EBV 1.0 1264 NEG 118 2452 12 EBV BRLF1 YVLDHLIVV effector T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*02:01 B2M MHCI -2856 chip0420_352586 -1.08 10.51 Chip1 T1D_1 T1D TGTGCCAGCAGTGAAGCGGGGCGTTCTCCCTACGAGCAGTACTTC CASSEAGRSPYEQYF TRBV6-1*01 TRBJ2-7*01 20.0 718.0 _CASSEAGRSPYEQYF 1 5295 HCVNS3-1073-1081 HCV 0.91 36 HCVNS3-1073-1081 132 5163 3 HCV NS3 CINGVCWTV Naive T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*02:01 B2M MHCI -2857 chip0420_29664 9.56 10.42 Chip1 T1D_2 T1D TGTGCAGCGTATGCAGGCAACATGCTCACCTTT CAAYAGNMLTF TRAV29/DV5*01 TRAJ39*01 24.0 2172.0 TGCGCCAGCAGAGCGGGAGCCGGGGATACGCAGTATTTT CASRAGAGDTQYF TRBV10-2*01 TRBJ2-3*01 49.0 3130.0 CAAYAGNMLTF_CASRAGAGDTQYF 18 3638 EBV-BLMF1 EBV 0.71 2531 NEG 169 3469 9 EBV BLMF1 GLCTLVAML effector memory T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*02:01 B2M MHCI -2858 chip0420_708589 9.82 10.28 Chip1 T1D_2 T1D TGTGCCAGCAGCTCGGGACTAGTCGCCCCCGGGGAGCTGTTTTTT CASSSGLVAPGELFF TRBV2*01 TRBJ2-2*01 49.0 2592.0 _CASSSGLVAPGELFF 133 5906 EBV-BLMF1 EBV 0.64 2531 NEG 152 5754 9 EBV BLMF1 GLCTLVAML effector memory T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*02:01 B2M MHCI -2859 chip0420_677846 8.98 9.95 Chip1 T1D_2 T1D TGCAGCGTGGGGACAGGGGGAACTAATGAAAAACTGTTTTTT CSVGTGGTNEKLFF TRBV29-1*01 TRBJ1-4*01 112.0 6190.0 _CSVGTGGTNEKLFF 638 3260 EBV-BLMF1 EBV 1.0 2531 NEG 137 3123 8 EBV BLMF1 GLCTLVAML effector memory T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*02:01 B2M MHCI -2860 chip0420_358156 -4.68 9.52 Chip1 T1D_1 T1D TGTGCCAGCAGTTACTCCGCCGGTAGCACTGAAGCTTTCTTT CASSYSAGSTEAFF TRBV6-5*01 TRBJ1-1*01 17.0 598.0 _CASSYSAGSTEAFF 1 5693 PGT-178 PGT 0.51 1480 PGT-178 127 5566 2 HomoSapiens PGT LLAGIGTVPI Naive T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*02:01 B2M MHCI -2861 chip0420_130593 -1.23 9.84 Chip1 T1D_2 T1D TGTGTGGTGAGCACCACCGGTAACCAGTTCTATTTT CVVSTTGNQFYF TRAV12-1*01 TRAJ49*01 29.0 2131.0 TGTGCCAGCAGCCAACTCCCCGGGGGCAATCAGCCCCAGCATTTT CASSQLPGGNQPQHF TRBV4-2*01 TRBJ1-5*01 36.0 1669.0 CVVSTTGNQFYF_CASSQLPGGNQPQHF 1 6416 IGRP-152-160-MLI IGRP 0.8 6 IGRP-152-160-MLI 142 6274 3 HomoSapiens IGRP FLWSVFMLI Naive T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*02:01 B2M MHCI -2862 chip0420_259212 15.92 9.94 Chip1 T1D_1 T1D TGTGCCCGCTGCCCCCGCCCGGGTGGTACGCAGTATTTT CARCPRPGGTQYF TRBV14*01 TRBJ2-3*01 2.0 104.0 _CARCPRPGGTQYF 1 2236 EBV-BLMF1 EBV 0.5 2531 NEG 134 2102 12 EBV BLMF1 GLCTLVAML effector T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*02:01 B2M MHCI -2863 chip0420_792534 5.77 13.19 Chip1 T1D_1 T1D TGTGCAGGAGCGGGTGGAGGAAGCCAAGGAAATCTCATCTTT CAGAGGGSQGNLIF TRAV27*01 TRAJ42*01 44.0 1332.0 CAGAGGGSQGNLIF_ 1 4823 M1 FLU 1.0 1250 NEG 149 4674 7 InfluenzaA M1 GILGFVFTL transitional T cells between effector and memory populations PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*02:01 B2M MHCI -2864 chip0420_546752 15.06 9.68 Chip1 T1D_2 T1D TGCGCCAGCAGAGCGGGAGCCGGGGATACGCAGTATTTT CASRAGAGDTQYF TRBV10-2*01 TRBJ2-3*01 20.0 823.0 _CASRAGAGDTQYF 59 2756 EBV-BLMF1 EBV 0.6 2531 NEG 137 2619 12 EBV BLMF1 GLCTLVAML effector T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*02:01 B2M MHCI -2865 chip0420_346826 10.41 10.98 Chip1 T1D_1 T1D TGTGCCAGCAGCCCAGTTAGCGGGTCAACCTACGAGCAGTACTTC CASSPVSGSTYEQYF TRBV3-1*01 TRBJ2-7*01 72.0 4273.0 _CASSPVSGSTYEQYF 80 3955 EBV-BLMF1 EBV 0.87 2531 NEG 142 3813 9 EBV BLMF1 GLCTLVAML effector memory T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*02:01 B2M MHCI -2866 chip0420_835173 14.3 12.93 Chip1 T1D_1 T1D TGTGCCGTGGACCCATGGGGTAACCCGTTCTATTTT CAVDPWGNPFYF TRAV39*01 TRAJ49*01 31.0 2412.0 CAVDPWGNPFYF_ 1 1468 EBV-BLMF1 EBV 0.73 2531 NEG 118 1350 12 EBV BLMF1 GLCTLVAML effector T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*02:01 B2M MHCI -2867 chip0420_600691 -2.45 14.07 Chip1 T1D_1 T1D TGTGCAATGAGTATATCTAACTTTGGACATGAGAAATTACCCTTT CAMSISNFGHEKLPF TRAV12-3*01 TRAJ48*01 62.0 2004.0 CAMSISNFGHEKLPF_ 1 3735 PGT-178 PGT 0.77 1480 PGT-178 134 3601 1 HomoSapiens PGT LLAGIGTVPI Naive T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*02:01 B2M MHCI -2868 chip0420_285244 -2.76 13.82 Chip1 T1D_1 T1D TGCGCCAGCAGCCCCGGGCCCGTCGGGGGGACTGAAGCTTTCTTT CASSPGPVGGTEAFF TRBV4-1*01 TRBJ1-1*01 13.0 500.0 _CASSPGPVGGTEAFF 1 3079 PGT-178 PGT 0.76 1480 PGT-178 135 2944 1 HomoSapiens PGT LLAGIGTVPI Naive T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*02:01 B2M MHCI -2869 chip0420_327106 -3.64 9.57 Chip1 T1D_1 T1D _ 6746 5279 HCVNS4B-1807-1816 HCV 0.89 74 HCVNS4B-1807-1816 124 5155 2 HCV NS4B LLFNILGGWV Naive T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*02:01 B2M MHCI -2870 chip0420_67523 6.01 13.18 Chip1 T1D_1 T1D TGTGCTTATAGTTACGGCCCTGGTGGTACTAGCTATGGAAAGCTGACATTT CAYSYGPGGTSYGKLTF TRAV38-2/DV8*01 TRAJ52*01 49.0 2019.0 TGTAGTAGCGGGAGTGGATACGAGCAGTTCTTC CSSGSGYEQFF TRBV19*01 TRBJ2-1*01 2.0 254.0 CAYSYGPGGTSYGKLTF_CSSGSGYEQFF 1 4369 M1 FLU 0.74 1250 M1 125 4244 7 InfluenzaA M1 GILGFVFTL transitional T cells between effector and memory populations PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*02:01 B2M MHCI -2871 chip0420_804843 4.88 11.9 Chip1 T1D_2 T1D TGTGCCAGCAGTTACGGGGGTTTGGGTGGGAATGAGCAGTTCTTC CASSYGGLGGNEQFF TRBV6-5*01 TRBJ2-1*01 16.0 368.0 _CASSYGGLGGNEQFF 1 2953 PGT-178 PGT 0.59 1480 NEG 128 2825 6 HomoSapiens PGT LLAGIGTVPI central memory T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*02:01 B2M MHCI -2872 chip0420_754838 -3.17 10.14 Chip1 T1D_1 T1D TGTGCCAGCACCTCCCGGGAGCTCAATCAGCCCCAGCATTTT CASTSRELNQPQHF TRBV13*01 TRBJ1-5*01 14.0 625.0 _CASTSRELNQPQHF 1 5381 PREINS-2-10 INS 0.74 37 PREINS-2-10 122 5259 2 HomoSapiens PREINS ALWMRLLPL Naive T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*02:01 B2M MHCI -2873 chip0420_250859 12.08 7.33 Chip1 T1D_2 T1D TGCGCCAGCAGGATGGGGGCCGGGGATACGCAGTATTTT CASRMGAGDTQYF TRBV10-2*01 TRBJ2-3*01 3.0 178.0 _CASRMGAGDTQYF 90 2673 EBV-BLMF1 EBV 0.75 2531 NEG 135 2538 10 EBV BLMF1 GLCTLVAML effector memory T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*02:01 B2M MHCI -2874 chip0420_153130 -3.2 9.02 Chip1 T1D_2 T1D _ 6746 5368 PGT-178 PGT 0.62 1480 NEG 130 5238 2 HomoSapiens PGT LLAGIGTVPI Naive T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*02:01 B2M MHCI -2875 chip0420_798574 12.59 12.35 Chip1 T1D_2 T1D _ 6746 1657 EBV-BRLF1 EBV 0.84 1264 EBV-BRLF1 145 1512 11 EBV BRLF1 YVLDHLIVV effector T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*02:01 B2M MHCI -2876 chip0420_574631 8.68 8.69 Chip1 T1D_1 T1D TGTGCCAGCAGCCTAGGCCCGGGTGGTACGCTGTATTGT CASSLGPGGTLYC TRBV14*01 TRBJ2-3*01 5.0 61.0 _CASSLGPGGTLYC 1 8307 MART1-ALA MART1 0.8 269 MART1-ALA 145 8162 8 HomoSapiens MART1 ALAGIGILTV effector memory T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*02:01 B2M MHCI -2877 chip0420_520686 10.88 11.88 Chip1 T1D_1 T1D TGTGCTCTCTATAACACCGACAAGCTCATCTTT CALYNTDKLIF TRAV9-2*01 TRAJ34*01 3.0 397.0 CALYNTDKLIF_ 10 3513 EBV-BLMF1 EBV 0.9 2531 NEG 120 3393 9 EBV BLMF1 GLCTLVAML effector memory T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*02:01 B2M MHCI -2878 chip0420_406531 5.67 13.21 Chip1 T1D_2 T1D TGTGCTTTCATCATTAATGCGGGTGGTACTAGCTCTGGATCGCTGTCATTT CAFIINAGGTSSGSLSF TRAV38-1*01 TRAJ52*01 45.0 1962.0 CAFIINAGGTSSGSLSF_ 1 7418 M1 FLU 0.6 1250 NEG 146 7272 7 InfluenzaA M1 GILGFVFTL transitional T cells between effector and memory populations PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*02:01 B2M MHCI -2879 chip0420_29367 8.46 9.22 Chip1 T1D_2 T1D TGCAGCGTGGGGACAGGGGGAACTAATGAAAAACTGTTTTTT CSVGTGGTNEKLFF TRBV29-1*01 TRBJ1-4*01 81.0 3171.0 _CSVGTGGTNEKLFF 638 6382 EBV-BLMF1 EBV 0.58 2531 NEG 142 6240 8 EBV BLMF1 GLCTLVAML effector memory T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*02:01 B2M MHCI -2880 chip0420_738487 9.99 10.26 Chip1 T1D_2 T1D TGTGCCAGCAGCGTAGTAGGCAATGAGCAGTTCTTC CASSVVGNEQFF TRBV9*01 TRBJ2-1*01 41.0 4060.0 _CASSVVGNEQFF 5 2934 EBV-BLMF1 EBV 0.78 2531 EBV-BLMF1 135 2799 9 EBV BLMF1 GLCTLVAML effector memory T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*02:01 B2M MHCI -2881 chip0420_849851 13.73 9.32 Chip1 T1D_1 T1D TGTGCCAGCAGTCCGGACCAAACTAGCTCCTACAATGAGCAGTTCTTC CASSPDQTSSYNEQFF TRBV27*01 TRBJ2-1*01 45.0 2524.0 _CASSPDQTSSYNEQFF 47 4084 EBV-BRLF1 EBV 0.87 1264 EBV-BRLF1 144 3940 12 EBV BRLF1 YVLDHLIVV effector T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*02:01 B2M MHCI -2882 chip0420_381134 5.28 9.15 Chip1 T1D_2 T1D _ 6746 2987 EBV-LMP2A EBV 0.96 700 EBV-LMP2A 140 2847 6 EBV LMP2A CLGGLLTMV central memory T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*02:01 B2M MHCI -2883 chip0420_435388 10.48 10.32 Chip1 T1D_1 T1D TGCAGTGCTAGAGACGGCTCCGGGACAGTCGATTCACCCCTCCACTTT CSARDGSGTVDSPLHF TRBV20-1*01 TRBJ1-6*01 22.0 969.0 _CSARDGSGTVDSPLHF 2 4021 EBV-BLMF1 EBV 0.71 2531 EBV-BLMF1 143 3878 9 EBV BLMF1 GLCTLVAML effector memory T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*02:01 B2M MHCI -2884 chip0420_285807 11.0 10.61 Chip1 T1D_2 T1D TGCGCCAGCAGAGCGGGAGCCGGGGATACGCAGTATTTT CASRAGAGDTQYF TRBV10-2*01 TRBJ2-3*01 42.0 3050.0 _CASRAGAGDTQYF 59 2857 EBV-BLMF1 EBV 0.43 2531 NEG 133 2724 9 EBV BLMF1 GLCTLVAML effector memory T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*02:01 B2M MHCI -2885 chip0420_562102 -1.78 8.68 Chip1 healthy_1 healthy TGCAGTGCCACATCCCCTAGCGGGCCCACCGGGGAGCTGTTTTTT CSATSPSGPTGELFF TRBV20-1*01 TRBJ2-2*01 13.0 716.0 _CSATSPSGPTGELFF 1 5835 PGT-178 PGT 0.79 1480 PGT-178 113 5722 3 HomoSapiens PGT LLAGIGTVPI Naive T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*02:01 B2M MHCI -2886 chip0420_490947 11.12 10.86 Chip1 T1D_2 T1D TGCAGCGTGGGGACAGGGGGAACTAATGAAAAACTGTTTTTT CSVGTGGTNEKLFF TRBV29-1*01 TRBJ1-4*01 51.0 2611.0 _CSVGTGGTNEKLFF 638 3544 EBV-BLMF1 EBV 1.0 2531 NEG 137 3407 9 EBV BLMF1 GLCTLVAML effector memory T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*02:01 B2M MHCI -2887 chip0420_163172 -4.24 10.92 Chip1 T1D_1 T1D _ 6746 5088 MART1-ALA MART1 0.53 269 NEG 134 4954 2 HomoSapiens MART1 ALAGIGILTV Naive T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*02:01 B2M MHCI -2888 chip0420_597188 11.08 10.45 Chip1 T1D_2 T1D TGTGTGGTGAACGGCAGGGATAGCAGCTATAAATTGATCTTC CVVNGRDSSYKLIF TRAV12-1*01 TRAJ12*01 52.0 2245.0 TGTGCCAGCAGCTCGGGACTAGTCGCCCCCGGGGAGCTGTTTTTT CASSSGLVAPGELFF TRBV2*01 TRBJ2-2*01 53.0 3682.0 CVVNGRDSSYKLIF_CASSSGLVAPGELFF 98 4179 EBV-BLMF1 EBV 0.7 2531 NEG 138 4041 9 EBV BLMF1 GLCTLVAML effector memory T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*02:01 B2M MHCI -2889 chip0420_371228 7.28 10.43 Chip1 T1D_1 T1D TGTGCTGCGGAGGGCGGTTCGGGATACAGCACCCTCACCTTT CAAEGGSGYSTLTF TRAV17*01 TRAJ11*01 48.0 2080.0 CAAEGGSGYSTLTF_ 1 5638 EBV-LMP2-FLY EBV 0.93 355 EBV-LMP2-FLY 132 5506 7 EBV LMP2 FLYALALLL transitional T cells between effector and memory populations PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*02:01 B2M MHCI -2890 chip0420_361768 6.7 11.89 Chip1 healthy_1 healthy TGCGCCAGCAGCGCGGGACAGGGACTTCCCTACGAGCAGTACTTC CASSAGQGLPYEQYF TRBV5-1*01 TRBJ2-7*01 46.0 2713.0 _CASSAGQGLPYEQYF 9 5061 M1 FLU 0.94 1250 M1 138 4923 7 InfluenzaA M1 GILGFVFTL transitional T cells between effector and memory populations PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*02:01 B2M MHCI -2891 chip0420_177234 7.13 14.37 Chip1 T1D_1 T1D _ 6746 2661 M1 FLU 0.79 1250 M1 137 2524 7 InfluenzaA M1 GILGFVFTL transitional T cells between effector and memory populations PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*02:01 B2M MHCI -2892 chip0420_107316 5.74 12.76 Chip1 T1D_1 T1D TGTGTGGTGAACGGCGAGGATAGCAGCTATAAATTGATCTTC CVVNGEDSSYKLIF TRAV12-1*01 TRAJ12*01 3.0 240.0 TGTGCCAGTAGTTCCCGGAGCTCCTACGAGCAGTACTTC CASSSRSSYEQYF TRBV19*01 TRBJ2-7*01 6.0 460.0 CVVNGEDSSYKLIF_CASSSRSSYEQYF 1 5804 M1 FLU 0.8 1250 M1 139 5665 7 InfluenzaA M1 GILGFVFTL transitional T cells between effector and memory populations PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*02:01 B2M MHCI -2893 chip0420_750361 10.73 12.02 Chip1 T1D_2 T1D TGTGCTCTAAAACACACCGGTAACCAGTTCTATTTT CALKHTGNQFYF TRAV16*01 TRAJ49*01 26.0 2142.0 TGTGCCAGCAGGCCGGTCGTGTGCTCCTACAATGAGCAGTTCTTC CASRPVVCSYNEQFF TRBV27*01 TRBJ2-1*01 53.0 2546.0 CALKHTGNQFYF_CASRPVVCSYNEQFF 1 2698 EBV-BRLF1 EBV 1.0 1264 EBV-BRLF1 151 2547 9 EBV BRLF1 YVLDHLIVV effector memory T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*02:01 B2M MHCI -2894 chip0420_558452 14.18 10.11 Chip1 T1D_1 T1D TGCGGCCCAGAGGAACCTAACGACTACAAGCTCAGCTTT CGPEEPNDYKLSF TRAV30*01 TRAJ20*01 36.0 2171.0 CGPEEPNDYKLSF_ 13 4110 EBV-BLMF1 EBV 0.5 2531 NEG 120 3990 12 EBV BLMF1 GLCTLVAML effector T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*02:01 B2M MHCI -2895 chip0420_178503 6.81 11.51 Chip1 healthy_1 healthy _ 6746 4510 M1 FLU 0.72 1250 M1 147 4363 7 InfluenzaA M1 GILGFVFTL transitional T cells between effector and memory populations PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*02:01 B2M MHCI -2896 chip0420_9731 13.8 8.11 Chip1 T1D_2 T1D TGTGCAGAGAGTACTTCGGGAGGAAAGCTTATCTTC CAESTSGGKLIF TRAV5*01 TRAJ23*01 25.0 2086.0 TGCAGCGTGGGGACAGGGGGAACTAATGAAAAACTGTTTTTT CSVGTGGTNEKLFF TRBV29-1*01 TRBJ1-4*01 172.0 8403.0 CAESTSGGKLIF_CSVGTGGTNEKLFF 107 2515 EBV-BLMF1 EBV 0.57 2531 NEG 162 2353 10 EBV BLMF1 GLCTLVAML effector memory T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*02:01 B2M MHCI -2897 chip0420_530180 14.35 8.45 Chip1 T1D_1 T1D TGTGCCAGCAGCCAAAGCCCGGGTGGTACGCAGTATTTT CASSQSPGGTQYF TRBV14*01 TRBJ2-3*01 30.0 1408.0 _CASSQSPGGTQYF 94 2779 EBV-BLMF1 EBV 0.71 2531 NEG 146 2633 12 EBV BLMF1 GLCTLVAML effector T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*02:01 B2M MHCI -2898 chip0420_487563 -4.58 9.85 Chip1 healthy_1 healthy TGTGCCAGCAGCTTATCGGGCGGGGCGGGAGGGGTAAGCGAGCAGTTCTTC CASSLSGGAGGVSEQFF TRBV7-6*01 TRBJ2-1*01 1.0 17.0 _CASSLSGGAGGVSEQFF 1 5133 PGT-178 PGT 0.86 1480 PGT-178 120 5013 2 HomoSapiens PGT LLAGIGTVPI Naive T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*02:01 B2M MHCI -2899 chip0420_314113 9.65 10.49 Chip1 T1D_1 T1D TGTGCCGTGCATGCGCTCGACAAGCTCATCTTT CAVHALDKLIF TRAV8-1*01 TRAJ34*01 4.0 130.0 TGTGCCAGCAGTGAGGCATTTCTAGCGGACAATGAGCAGTTCTTC CASSEAFLADNEQFF TRBV6-4*01 TRBJ2-1*01 32.0 1915.0 CAVHALDKLIF_CASSEAFLADNEQFF 1 3857 EBV-BRLF1 EBV 0.6 1264 NEG 134 3723 9 EBV BRLF1 YVLDHLIVV effector memory T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*02:01 B2M MHCI -2900 chip0420_232473 -2.73 12.16 Chip1 T1D_1 T1D TGTGCCAGCAGCCCCCCATTGGGCGGTCAGCCCCAGCATTTT CASSPPLGGQPQHF TRBV28*01 TRBJ1-5*01 19.0 1358.0 _CASSPPLGGQPQHF 1 3476 PGT-178 PGT 0.82 1480 PGT-178 126 3350 1 HomoSapiens PGT LLAGIGTVPI Naive T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*02:01 B2M MHCI -2901 chip0420_796981 -1.04 7.61 Chip1 T1D_1 T1D _ 6746 6041 M1 FLU 0.85 1250 M1 131 5910 3 InfluenzaA M1 GILGFVFTL Naive T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*02:01 B2M MHCI -2902 chip0420_357768 13.01 6.91 Chip1 T1D_2 T1D TGTGCAGCAAGCGTCCTACCAGGAAACACACCTCTTGTCTTT CAASVLPGNTPLVF TRAV23/DV6*01 TRAJ29*01 42.0 2132.0 TGTGCCAGTAGTATAGGACAAACCGGGGAGCTGTTTTTT CASSIGQTGELFF TRBV19*01 TRBJ2-2*01 29.0 1523.0 CAASVLPGNTPLVF_CASSIGQTGELFF 2 2531 HCV-L2I HCV 0.5 9 NEG 148 2383 10 HCV POL KIVALGINAV effector memory T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*02:01 B2M MHCI -2903 chip0420_81475 10.87 7.05 Chip1 T1D_1 T1D TGTGCCAGTAGTCCCCACTTGGGTGCGGCGGCCGAGCAGTACTTC CASSPHLGAAAEQYF TRBV19*01 TRBJ2-7*01 28.0 1681.0 _CASSPHLGAAAEQYF 10 5227 EBV-BRLF1 EBV 0.8 1264 EBV-BRLF1 138 5089 10 EBV BRLF1 YVLDHLIVV effector memory T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*02:01 B2M MHCI -2904 chip0420_821876 7.79 13.88 Chip1 T1D_1 T1D TGTGCCAGTAGTATAGCGGCGTGGGGGACGGATAACACCGGGGAGCTGTTTCTT CASSIAAWGTDNTGELFL TRBV19*01 TRBJ2-2*01 1.0 38.0 _CASSIAAWGTDNTGELFL 1 2729 M1 FLU 0.78 1250 M1 140 2589 7 InfluenzaA M1 GILGFVFTL transitional T cells between effector and memory populations PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*02:01 B2M MHCI -2905 chip0420_726040 7.63 13.4 Chip1 healthy_1 healthy TGTGCCAGCAGTTACTCTGCAGCTGGTGAGCAGTTCTTC CASSYSAAGEQFF TRBV6-5*01 TRBJ2-1*01 27.0 1976.0 _CASSYSAAGEQFF 1 2824 M1 FLU 0.88 1250 NEG 121 2703 7 InfluenzaA M1 GILGFVFTL transitional T cells between effector and memory populations PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*02:01 B2M MHCI -2906 chip0420_715541 10.92 7.54 Chip1 T1D_2 T1D _ 6746 3986 EBV-LMP2A EBV 0.96 700 EBV-LMP2A 141 3845 10 EBV LMP2A CLGGLLTMV effector memory T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*02:01 B2M MHCI -2907 chip0420_526454 8.05 13.8 Chip1 T1D_1 T1D _ 6746 2982 M1 FLU 0.77 1250 NEG 140 2842 7 InfluenzaA M1 GILGFVFTL transitional T cells between effector and memory populations PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*02:01 B2M MHCI -2908 chip0420_382020 15.8 10.38 Chip1 healthy_1 healthy TGTGCCAGTAGTATAAGAAGTTCCTACGAGCAGTACTTC CASSIRSSYEQYF TRBV19*01 TRBJ2-7*01 3.0 107.0 _CASSIRSSYEQYF 36 2343 M1 FLU 0.68 1250 M1 128 2215 12 InfluenzaA M1 GILGFVFTL effector T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*02:01 B2M MHCI -2909 chip0420_364417 7.11 12.96 Chip1 T1D_1 T1D _ 6746 3392 M1 FLU 0.83 1250 NEG 131 3261 7 InfluenzaA M1 GILGFVFTL transitional T cells between effector and memory populations PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*02:01 B2M MHCI -2910 chip0420_771018 -2.92 13.89 Chip1 T1D_1 T1D TGTGCCAGCAGCTCGGATACTAGCGGGAGCCTCTACGAGCAGTACTTC CASSSDTSGSLYEQYF TRBV3-1*01 TRBJ2-7*01 22.0 1282.0 _CASSSDTSGSLYEQYF 1 3334 PGT-178 PGT 0.54 1480 PGT-178 133 3201 1 HomoSapiens PGT LLAGIGTVPI Naive T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*02:01 B2M MHCI -2911 chip0420_721774 9.14 8.55 Chip1 T1D_1 T1D TGCAGCGTCGGCTCCAGGGGAACTAATGAAAAACTGTTTTTT CSVGSRGTNEKLFF TRBV29-1*01 TRBJ1-4*01 78.0 3998.0 _CSVGSRGTNEKLFF 283 4180 EBV-BLMF1 EBV 0.71 2531 NEG 148 4032 8 EBV BLMF1 GLCTLVAML effector memory T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*02:01 B2M MHCI -2912 chip0420_16355 14.87 8.88 Chip1 T1D_2 T1D TGCAGCGTGGGGACAGGGGGAACTAATGAAAAACTGTTTTTT CSVGTGGTNEKLFF TRBV29-1*01 TRBJ1-4*01 120.0 5903.0 _CSVGTGGTNEKLFF 638 1918 EBV-BLMF1 EBV 0.86 2531 NEG 158 1760 12 EBV BLMF1 GLCTLVAML effector T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*02:01 B2M MHCI -2913 chip0420_504647 11.23 7.05 Chip1 T1D_2 T1D TGCGCCAGCAGGATGGGGGCCGGGGATACGCAGTATTTT CASRMGAGDTQYF TRBV10-2*01 TRBJ2-3*01 27.0 1432.0 _CASRMGAGDTQYF 90 3475 EBV-BLMF1 EBV 0.83 2531 EBV-BLMF1 140 3335 10 EBV BLMF1 GLCTLVAML effector memory T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*02:01 B2M MHCI -2914 chip0420_429737 11.04 10.84 Chip1 T1D_1 T1D TGTGCCAGCAGCCCAGTTAGCGGGTCAACCTACGAGCAGTACTTC CASSPVSGSTYEQYF TRBV3-1*01 TRBJ2-7*01 23.0 1648.0 _CASSPVSGSTYEQYF 80 3348 EBV-BLMF1 EBV 0.93 2531 NEG 137 3211 9 EBV BLMF1 GLCTLVAML effector memory T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*02:01 B2M MHCI -2915 chip0420_194329 11.8 12.68 Chip1 T1D_2 T1D TGTGCTGTGGGCGCCGGGGGGGAATTCAGGGAGCCCAGAAGCTGGTATTT CAVGAGGEt?tQGAQKLVF TRAV8-3*01 TRAJ54*01 8.0 697.0 CAVGAGGEt?tQGAQKLVF_ 1 2101 EBV-BLMF1 EBV 0.5 2531 NEG 140 1961 11 EBV BLMF1 GLCTLVAML effector T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*02:01 B2M MHCI -2916 chip0420_778631 5.68 9.54 Chip1 T1D_2 T1D _ 6746 5926 EBV-LMP1-1 EBV 0.77 237 EBV-LMP1-1 120 5806 6 EBV LMP1 YLLEMLWRL central memory T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*02:01 B2M MHCI -2917 chip0420_11509 15.79 12.15 Chip1 T1D_2 T1D TGCAGCGTGGGGACAGGGGGAACTAATGAAAAACTGTTTTTT CSVGTGGTNEKLFF TRBV29-1*01 TRBJ1-4*01 73.0 3830.0 _CSVGTGGTNEKLFF 638 1649 EBV-BLMF1 EBV 0.5 2531 NEG 151 1498 12 EBV BLMF1 GLCTLVAML effector T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*02:01 B2M MHCI -2918 chip0420_559598 14.61 9.77 Chip1 T1D_1 T1D TGTGCCGTGGACCCATGGGGTAACCAGTTCTATTTT CAVDPWGNQFYF TRAV39*01 TRAJ49*01 35.0 2272.0 TGTGCCACCCAACAGGGGAGGGACAGTCAGCCCCAGCATTTT CATQQGRDSQPQHF TRBV28*01 TRBJ1-5*01 34.0 1171.0 CAVDPWGNQFYF_CATQQGRDSQPQHF 16 3481 EBV-BLMF1 EBV 0.7 2531 NEG 139 3342 12 EBV BLMF1 GLCTLVAML effector T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*02:01 B2M MHCI -2919 chip0420_369356 14.39 9.89 Chip1 T1D_1 T1D TGCAGCGTCGGCTCCAGGGGAACTAATGAAAAACTGTTTTTT CSVGSRGTNEKLFF TRBV29-1*01 TRBJ1-4*01 145.0 8023.0 _CSVGSRGTNEKLFF 283 2166 EBV-BLMF1 EBV 0.75 2531 NEG 131 2035 12 EBV BLMF1 GLCTLVAML effector T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*02:01 B2M MHCI -2920 chip0420_264020 12.1 9.17 Chip1 T1D_1 T1D TGTGTGGTGAACGGACGGGATAGCAGCTATAAATTGATCTTC CVVNGRDSSYKLIF TRAV12-1*01 TRAJ12*01 9.0 629.0 TGTGCCAGCAGTGACGGTCGGGTCCACCCGGGGACCCAGTACTTC CASSDGRVHPGTQYF TRBV2*01 TRBJ2-5*01 18.0 1212.0 CVVNGRDSSYKLIF_CASSDGRVHPGTQYF 14 2346 EBV-BLMF1 EBV 0.83 2531 NEG 145 2201 10 EBV BLMF1 GLCTLVAML effector memory T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*02:01 B2M MHCI -2921 chip0420_249884 6.63 13.05 Chip1 healthy_1 healthy _ 6746 4058 M1 FLU 0.76 1250 M1 126 3932 7 InfluenzaA M1 GILGFVFTL transitional T cells between effector and memory populations PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*02:01 B2M MHCI -2922 chip0420_26806 11.11 12.64 Chip1 T1D_2 T1D TGTGCCGCTTACAACTTCAACAAATTTTACTTT CAAYNFNKFYF TRAV8-1*01 TRAJ21*01 13.0 1087.0 CAAYNFNKFYF_ 1 2110 EBV-BRLF1 EBV 0.98 1264 EBV-BRLF1 151 1959 11 EBV BRLF1 YVLDHLIVV effector T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*02:01 B2M MHCI -2923 chip0420_344767 -2.53 8.98 Chip1 T1D_2 T1D _ 6746 5958 PGT-178 PGT 0.96 1480 PGT-178 117 5841 3 HomoSapiens PGT LLAGIGTVPI Naive T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*02:01 B2M MHCI -2924 chip0420_597343 8.46 8.97 Chip1 T1D_1 T1D TGTGCCAGCAGCACGGGACAGCTATCGAACACCGGGGAGCTGTTTTTT CASSTGQLSNTGELFF TRBV9*01 TRBJ2-2*01 9.0 421.0 _CASSTGQLSNTGELFF 82 5746 EBV-BLMF1 EBV 0.47 2531 NEG 142 5604 8 EBV BLMF1 GLCTLVAML effector memory T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*02:01 B2M MHCI -2925 chip0420_111054 15.39 9.16 Chip1 T1D_1 T1D TGTGCTGACTTAGAATGCTGGCAACAACCGTAAGCTGATTTGG CADLECW??cNNRKLIW TRAV36/DV7*01 TRAJ38*01 1.0 16.0 TGTGCCAGCAGCACGGGACAGCTATCGAACACCGGGGAGCTGTTTTTT CASSTGQLSNTGELFF TRBV9*01 TRBJ2-2*01 77.0 3475.0 CADLECW??cNNRKLIW_CASSTGQLSNTGELFF 2 2515 EBV-BLMF1 EBV 0.6 2531 NEG 132 2383 12 EBV BLMF1 GLCTLVAML effector T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*02:01 B2M MHCI -2926 chip0420_16194 14.84 10.8 Chip1 T1D_1 T1D TGCGTGGTGAACGGACGGGATAGCAGCTATAAATTGATCTTC CVVNGRDSSYKLIF TRAV12-1*01 TRAJ12*01 23.0 780.0 TGTGCCAGCAGTGACGGTCGGGTCCACCCGGGGACCCAGTACTTC CASSDGRVHPGTQYF TRBV2*01 TRBJ2-5*01 25.0 1262.0 CVVNGRDSSYKLIF_CASSDGRVHPGTQYF 14 2553 EBV-BLMF1 EBV 0.75 2531 NEG 140 2413 12 EBV BLMF1 GLCTLVAML effector T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*02:01 B2M MHCI -2927 chip0420_499590 -3.05 8.34 Chip1 T1D_1 T1D TGTGCCGTGAATGGGGGTGCCAGACTCATGTTT CAVNGGARLMF TRAV12-2*01 TRAJ31*01 26.0 2113.0 TGTGCCGCCCGGGGCGGCTGGGCCGACACCGGGGAGCTGTTTTTT CAARGGWADTGELFF TRBV6-1*01 TRBJ2-2*01 9.0 315.0 CAVNGGARLMF_CAARGGWADTGELFF 1 7012 PGT-178 PGT 0.67 1480 PGT-178 125 6887 2 HomoSapiens PGT LLAGIGTVPI Naive T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*02:01 B2M MHCI -2928 chip0420_108056 13.19 10.83 Chip1 T1D_1 T1D _ 6746 2294 EBV-BLMF1 EBV 0.86 2531 NEG 121 2173 9 EBV BLMF1 GLCTLVAML effector memory T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*02:01 B2M MHCI -2929 chip0420_873743 -4.09 11.78 Chip1 T1D_1 T1D TGTGCCAGCAACGTCCAGGGGGCCACCTACGAGCAGTACTTC CASNVQGATYEQYF TRBV28*01 TRBJ2-7*01 8.0 238.0 _CASNVQGATYEQYF 1 4168 GP160-311-320 HIV 0.62 109 NEG 130 4038 1 HIV-1 GP160 RGPGRAFVTI Naive T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*02:01 B2M MHCI -2930 chip0420_294761 14.21 12.35 Chip1 T1D_2 T1D TGTGCCAGCAGCCCCTCGACTAGCGGGAGTGGGGAGACCCAGTACTTC CASSPSTSGSGETQYF TRBV3-1*01 TRBJ2-5*01 54.0 3308.0 _CASSPSTSGSGETQYF 18 1743 EBV-BRLF1 EBV 0.75 1264 NEG 134 1609 12 EBV BRLF1 YVLDHLIVV effector T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*02:01 B2M MHCI -2931 chip0420_525522 14.03 9.49 Chip1 T1D_1 T1D _ 6746 2885 EBV-BRLF1 EBV 0.69 1264 NEG 137 2748 12 EBV BRLF1 YVLDHLIVV effector T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*02:01 B2M MHCI -2932 chip0420_487471 11.54 12.4 Chip1 T1D_2 T1D _ 6746 2039 EBV-BRLF1 EBV 0.67 1264 NEG 134 1905 11 EBV BRLF1 YVLDHLIVV effector T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*02:01 B2M MHCI -2933 chip0420_841061 8.77 11.42 Chip1 T1D_2 T1D TGTACAGAGAGTACTTCGGGAGGAAAGCTTATCTTC CTESTSGGKLIF TRAV5*01 TRAJ23*01 28.0 2134.0 TGCAGCGTGGGGACAGGGGGAACTAATGAAAAACTGTTTTTT CSVGTGGTNEKLFF TRBV29-1*01 TRBJ1-4*01 119.0 4357.0 CTESTSGGKLIF_CSVGTGGTNEKLFF 2 3008 EBV-BLMF1 EBV 0.64 2531 NEG 142 2866 9 EBV BLMF1 GLCTLVAML effector memory T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*02:01 B2M MHCI -2934 chip0420_72187 14.47 9.68 Chip1 T1D_1 T1D TGTGCTCTCTATAACACCGACAAGCTCATCTTT CALYNTDKLIF TRAV9-2*01 TRAJ34*01 28.0 2097.0 CALYNTDKLIF_ 10 2632 EBV-BLMF1 EBV 0.72 2531 EBV-BLMF1 148 2484 12 EBV BLMF1 GLCTLVAML effector T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*02:01 B2M MHCI -2935 chip0420_714849 -1.55 8.34 Chip1 T1D_1 T1D _ 6746 6567 EBV-BLMF1 EBV 0.57 2531 NEG 145 6422 3 EBV BLMF1 GLCTLVAML Naive T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*02:01 B2M MHCI -2936 chip0420_582128 14.8 10.07 Chip1 T1D_1 T1D TGTGCCAGCAGCCCAGTTAGCGGGTCAACCTACGAGCAGTACTTC CASSPVSGSTYEQYF TRBV3-1*01 TRBJ2-7*01 26.0 1310.0 _CASSPVSGSTYEQYF 80 4557 EBV-BLMF1 EBV 0.75 2531 EBV-BLMF1 147 4410 12 EBV BLMF1 GLCTLVAML effector T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*02:01 B2M MHCI -2937 chip0420_322550 12.37 7.32 Chip1 T1D_1 T1D TGTGCCAGCAGCACGGGACAGCTATCGAACACCGGGGAGCTGTTTTTT CASSTGQLSNTGELFF TRBV9*01 TRBJ2-2*01 27.0 1037.0 _CASSTGQLSNTGELFF 82 2666 EBV-BLMF1 EBV 0.55 2531 NEG 154 2512 10 EBV BLMF1 GLCTLVAML effector memory T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*02:01 B2M MHCI -2938 chip0420_232699 6.26 14.25 Chip1 T1D_1 T1D TGTGCCAGTAGTATAAATGGGGGCCGGAGGGATGGCTACACCTTC CASSINGGRRDGYTF TRBV19*01 TRBJ1-2*01 42.0 1980.0 _CASSINGGRRDGYTF 32 3783 M1 FLU 0.83 1250 M1 151 3632 7 InfluenzaA M1 GILGFVFTL transitional T cells between effector and memory populations PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*02:01 B2M MHCI -2939 chip0420_589388 8.78 10.15 Chip1 T1D_2 T1D TGCGCCAGCAGAGCGGGAGCCGGGGATACGCAGTATTTT CASRAGAGDTQYF TRBV10-2*01 TRBJ2-3*01 44.0 2153.0 _CASRAGAGDTQYF 59 5225 EBV-BLMF1 EBV 0.75 2531 NEG 128 5097 8 EBV BLMF1 GLCTLVAML effector memory T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*02:01 B2M MHCI -2940 chip0420_112964 15.42 10.32 Chip1 T1D_2 T1D TGCGCCAGCAGAGCGGGAGCCGGGGATACGCAGTATTTT CASRAGAGDTQYF TRBV10-2*01 TRBJ2-3*01 22.0 1210.0 _CASRAGAGDTQYF 59 2926 EBV-BLMF1 EBV 0.67 2531 NEG 135 2791 12 EBV BLMF1 GLCTLVAML effector T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*02:01 B2M MHCI -2941 chip0420_566050 13.2 13.77 Chip1 T1D_2 T1D _ 6746 963 EBV-BLMF1 EBV 1.0 2531 NEG 121 842 11 EBV BLMF1 GLCTLVAML effector T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*02:01 B2M MHCI -2942 chip0420_3360 12.79 12.98 Chip1 T1D_2 T1D TGCAGCGTGGGGACAGGGGGAACTAATGAAAAACTGTTTTTT CSVGTGGTNEKLFF TRBV29-1*01 TRBJ1-4*01 78.0 2957.0 _CSVGTGGTNEKLFF 638 2149 EBV-BLMF1 EBV 0.6 2531 NEG 169 1980 10 EBV BLMF1 GLCTLVAML effector memory T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*02:01 B2M MHCI -2943 chip0420_75296 10.33 10.08 Chip1 T1D_1 T1D _ 6746 4125 EBV-BRLF1 EBV 0.86 1264 EBV-BRLF1 129 3996 9 EBV BRLF1 YVLDHLIVV effector memory T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*02:01 B2M MHCI -2944 chip0420_661762 13.6 7.57 Chip1 T1D_1 T1D TGCGGCACAGAGGAACCTAACGACTACAAGCTCAGCTTT CGTEEPNDYKLSF TRAV30*01 TRAJ20*01 40.0 2429.0 CGTEEPNDYKLSF_ 22 2247 EBV-BLMF1 EBV 0.5 2531 NEG 147 2100 10 EBV BLMF1 GLCTLVAML effector memory T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*02:01 B2M MHCI -2945 chip0420_115859 6.88 12.94 Chip1 T1D_1 T1D TGTGCCAGTAGTATGGGGGCGCATGGCTACACCTTC CASSMGAHGYTF TRBV19*01 TRBJ1-2*01 31.0 2511.0 _CASSMGAHGYTF 6 4237 M1 FLU 0.82 1250 NEG 129 4108 7 InfluenzaA M1 GILGFVFTL transitional T cells between effector and memory populations PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*02:01 B2M MHCI -2946 chip0420_673775 5.5 8.65 Chip1 T1D_1 T1D _ 6746 6843 EBV-LMP1-1 EBV 0.88 237 EBV-LMP1-1 133 6710 6 EBV LMP1 YLLEMLWRL central memory T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*02:01 B2M MHCI -2947 chip0420_781694 5.64 13.26 Chip1 T1D_1 T1D _ 6746 5295 M1 FLU 0.56 1250 NEG 138 5157 7 InfluenzaA M1 GILGFVFTL transitional T cells between effector and memory populations PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*02:01 B2M MHCI -2948 chip0420_747623 -2.76 8.1 Chip1 T1D_2 T1D TGTGTGGTGGACCCCGCCAGACTCATGTTT CVVDPARLMF TRAV12-1*01 TRAJ31*01 2.0 55.0 CVVDPARLMF_ 1 4738 PGT-178 PGT 0.8 1480 NEG 118 4620 2 HomoSapiens PGT LLAGIGTVPI Naive T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*02:01 B2M MHCI -2949 chip0420_662594 8.66 10.37 Chip1 T1D_1 T1D TGTGCCAGCAGCTGCAGGCGCTTTCTTT CASStg??caGAFF TRBV7-3*01 TRBJ1-1*01 16.0 1204.0 _CASStg??caGAFF 1 5857 EBV-BLMF1 EBV 0.89 2531 EBV-BLMF1 150 5707 8 EBV BLMF1 GLCTLVAML effector memory T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*02:01 B2M MHCI -2950 chip0420_496664 5.47 12.71 Chip1 T1D_1 T1D TGTGCTCCGGGCGGGGGTGGGGGACGCCAAGGAAATCTCATCTTT CAPGGGGGRQGNLIF TRAV17*01 TRAJ42*01 1.0 10.0 TGTGCCACCAGTGCTGTCGGGGTACCTACTGAAGCTTTCTTT CATSAVGVPTEAFF TRBV24-1*01 TRBJ1-1*01 21.0 1311.0 CAPGGGGGRQGNLIF_CATSAVGVPTEAFF 1 4537 M1 FLU 0.93 1250 NEG 149 4388 7 InfluenzaA M1 GILGFVFTL transitional T cells between effector and memory populations PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*02:01 B2M MHCI -2951 chip0420_469457 8.16 13.8 Chip1 T1D_1 T1D TGTGCCAGTAGTATATTTTCCGGGGGTGCAGATACGCAGTATTTT CASSIFSGGADTQYF TRBV19*01 TRBJ2-3*01 44.0 1239.0 _CASSIFSGGADTQYF 1 1863 M1 FLU 1.0 1250 M1 125 1738 7 InfluenzaA M1 GILGFVFTL transitional T cells between effector and memory populations PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*02:01 B2M MHCI -2952 chip0420_153283 -1.78 9.15 Chip1 T1D_2 T1D TGTGCCGTGAGAAGGGGAGGAGGTGCTGACGGACTCACCTTT CAVRRGGGADGLTF TRAV12-2*01 TRAJ45*01 6.0 293.0 CAVRRGGGADGLTF_ 1 5372 MART1-ALA MART1 0.69 269 NEG 118 5254 3 HomoSapiens MART1 ALAGIGILTV Naive T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*02:01 B2M MHCI -2953 chip0420_757767 12.36 10.65 Chip1 T1D_1 T1D _ 6746 3097 EBV-BLMF1 EBV 0.91 2531 NEG 146 2951 9 EBV BLMF1 GLCTLVAML effector memory T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*02:01 B2M MHCI -2954 chip0420_248443 13.04 11.38 Chip1 T1D_2 T1D TGCAGCGTGGGGACAGGGGGAACTAATGAAAAACTGTTTTTT CSVGTGGTNEKLFF TRBV29-1*01 TRBJ1-4*01 19.0 879.0 _CSVGTGGTNEKLFF 638 2138 EBV-BLMF1 EBV 0.6 2531 NEG 149 1989 9 EBV BLMF1 GLCTLVAML effector memory T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*02:01 B2M MHCI -2955 chip0420_150194 9.01 9.61 Chip1 T1D_3 T1D _ 6746 4306 BZLF1-190-197 EBV 0.57 2156 NEG 125 4181 8 EBV BZLF1 RAKFKQLL effector memory T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-B*08:01 B2M MHCI -2956 chip0420_330011 6.36 14.4 Chip1 T1D_1 T1D TGTGTGGTGATCTCAGACGAGCATGGAATATGGAAACAAACTGGTCTTT CVVISDEH??gEYGNKLVF TRAV10*01 TRAJ47*01 1.0 19.0 TGTGCCAGTAGCGGGAGAAGCACAGATACGCAGTATTTT CASSGRSTDTQYF TRBV19*01 TRBJ2-3*01 3.0 243.0 CVVISDEH??gEYGNKLVF_CASSGRSTDTQYF 1 4100 M1 FLU 0.89 1250 M1 130 3970 7 InfluenzaA M1 GILGFVFTL transitional T cells between effector and memory populations PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*02:01 B2M MHCI -2957 chip0420_425927 5.9 12.48 Chip1 T1D_1 T1D TGTGCCCGCCGTTCGCGCCAGGTACTTCCCAATGAGCAGTTCTTC CARRSRQVLPNEQFF TRBV2*01 TRBJ2-1*01 3.0 466.0 _CARRSRQVLPNEQFF 1 5247 M1 FLU 0.91 1250 M1 145 5102 7 InfluenzaA M1 GILGFVFTL transitional T cells between effector and memory populations PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*02:01 B2M MHCI -2958 chip0420_253487 14.03 9.55 Chip1 T1D_1 T1D _ 6746 2210 EBV-BLMF1 EBV 0.6 2531 NEG 145 2065 12 EBV BLMF1 GLCTLVAML effector T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*02:01 B2M MHCI -2959 chip0420_799620 -0.78 10.6 Chip1 T1D_1 T1D TGTGCACTGCCCCTATCTAACTCGGCGATGAGCAATTCACCTTT CALPLSNt?cGDEQFTF TRAV12-3*01 TRAJ48*01 44.0 1994.0 TGCGCCAGCAGCTTGGCCTCAGGGGAGGCGGCAGATACGCAGTATTTT CASSLASGEAADTQYF TRBV5-1*01 TRBJ2-3*01 9.0 372.0 CALPLSNt?cGDEQFTF_CASSLASGEAADTQYF 1 4938 PGT-178 PGT 0.66 1480 PGT-178 143 4795 3 HomoSapiens PGT LLAGIGTVPI Naive T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*02:01 B2M MHCI -2960 chip0420_631320 11.66 7.06 Chip1 T1D_1 T1D _ 6746 3969 EBV-LMP2-FLY EBV 0.86 355 EBV-LMP2-FLY 136 3833 10 EBV LMP2 FLYALALLL effector memory T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*02:01 B2M MHCI -2961 chip0420_468461 11.12 7.81 Chip1 T1D_2 T1D TGCAGCGTTGACCAAAGGACAGGGCAAAAGAAGAACTATGGCTACACCTTC CSVDQRTGQKKNYGYTF TRBV29-1*01 TRBJ1-2*01 187.0 5856.0 _CSVDQRTGQKKNYGYTF 40 2831 EBV-BLMF1 EBV 1.0 2531 NEG 162 2669 10 EBV BLMF1 GLCTLVAML effector memory T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*02:01 B2M MHCI -2962 chip0420_368541 -4.11 11.91 Chip1 T1D_1 T1D _ 6746 4169 GP160-311-320 HIV 0.81 109 GP160-311-320 124 4045 1 HIV-1 GP160 RGPGRAFVTI Naive T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*02:01 B2M MHCI -2963 chip0420_340543 8.57 11.41 Chip1 T1D_1 T1D TGCAGTGCTAGAGATGGCACAGGGAATGGCTACACCTTC CSARDGTGNGYTF TRBV20-1*01 TRBJ1-2*01 69.0 4295.0 _CSARDGTGNGYTF 14 3739 EBV-BLMF1 EBV 1.0 2531 EBV-BLMF1 136 3603 7 EBV BLMF1 GLCTLVAML transitional T cells between effector and memory populations PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*02:01 B2M MHCI -2964 chip0420_198565 -2.75 13.85 Chip1 T1D_1 T1D TGTGCAATGAGCTTCTCTAACTTTGGAAATGAGAAATTAACCTTT CAMSFSNFGNEKLTF TRAV12-3*01 TRAJ48*01 15.0 556.0 TGTGCCAGCAGCCAAGATGAACAGGTAGTAGGCAATGAGCAGTTCTTC CASSQDEQVVGNEQFF TRBV14*01 TRBJ2-1*01 10.0 336.0 CAMSFSNFGNEKLTF_CASSQDEQVVGNEQFF 1 3781 PGT-178 PGT 0.95 1480 PGT-178 111 3670 1 HomoSapiens PGT LLAGIGTVPI Naive T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*02:01 B2M MHCI -2965 chip0420_735745 5.12 10.3 Chip1 T1D_1 T1D _ 6746 4267 MART1-ALA MART1 0.62 269 NEG 119 4148 6 HomoSapiens MART1 ALAGIGILTV central memory T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*02:01 B2M MHCI -2966 chip0420_286504 7.65 11.78 Chip1 T1D_1 T1D _ 6746 4311 M1 FLU 0.93 1250 M1 116 4195 7 InfluenzaA M1 GILGFVFTL transitional T cells between effector and memory populations PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*02:01 B2M MHCI -2967 chip0420_124694 0.34 4.52 Chip1 T1D_1 T1D TGTGCTGGGCAGCTGGGTGGAGGAAGCCAAGGAAATCTCATCTTT CAGQLGGGSQGNLIF TRAV35*01 TRAJ42*01 41.0 2009.0 CAGQLGGGSQGNLIF_ 1 7120 ZNT8-293-300 ZNT8 0.55 17 NEG 140 6980 5 HomoSapiens ZNT8 LAVDGVLSV natural killer-like T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*02:01 B2M MHCI -2968 chip0420_395272 5.67 10.24 Chip1 T1D_1 T1D TGTGCCAGCAGCCCGGGGGACGCCCGTGGCGAGCAGTACTTC CASSPGDARGEQYF TRBV5-6*01 TRBJ2-7*01 15.0 983.0 _CASSPGDARGEQYF 12 7022 EBV-LMP1-1 EBV 0.82 237 NEG 134 6888 6 EBV LMP1 YLLEMLWRL central memory T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*02:01 B2M MHCI -2969 chip0420_354229 6.35 14.31 Chip1 T1D_1 T1D _ 6746 3872 M1 FLU 0.53 1250 M1 133 3739 7 InfluenzaA M1 GILGFVFTL transitional T cells between effector and memory populations PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*02:01 B2M MHCI -2970 chip0420_603915 12.96 7.0 Chip1 T1D_2 T1D TGCAGCGTGGGGACAGGGGGAACTAATGAAAAACTGTTTTTT CSVGTGGTNEKLFF TRBV29-1*01 TRBJ1-4*01 134.0 7017.0 _CSVGTGGTNEKLFF 638 3274 EBV-BLMF1 EBV 0.86 2531 NEG 122 3152 10 EBV BLMF1 GLCTLVAML effector memory T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*02:01 B2M MHCI -2971 chip0420_861941 6.08 12.85 Chip1 T1D_1 T1D _ 6746 5014 M1 FLU 0.92 1250 M1 158 4856 7 InfluenzaA M1 GILGFVFTL transitional T cells between effector and memory populations PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*02:01 B2M MHCI -2972 chip0420_801028 13.74 8.75 Chip1 T1D_2 T1D TGTGCAATGAGAGAGGACACGGGCAACTTCAACAAATTTTACTTT CAMREDTGNFNKFYF TRAV14/DV4*01 TRAJ21*01 59.0 2046.0 CAMREDTGNFNKFYF_ 1 2473 EBV-BRLF1 EBV 0.98 1264 EBV-BRLF1 146 2327 12 EBV BRLF1 YVLDHLIVV effector T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*02:01 B2M MHCI -2973 chip0420_374158 10.34 10.39 Chip1 T1D_2 T1D _ 6746 2958 EBV-BRLF1 EBV 0.98 1264 EBV-BRLF1 134 2824 9 EBV BRLF1 YVLDHLIVV effector memory T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*02:01 B2M MHCI -2974 chip0420_835765 14.7 8.78 Chip1 T1D_1 T1D TGCGGCCCCGCGGAACCTAACGACTACAAGCTCAGCTTT CGPAEPNDYKLSF TRAV30*01 TRAJ20*01 32.0 2059.0 TGTGCCAGCAGCACGGGACAGCTATCGAACACCGGGGAGCTGTTTTTT CASSTGQLSNTGELFF TRBV9*01 TRBJ2-2*01 81.0 2679.0 CGPAEPNDYKLSF_CASSTGQLSNTGELFF 8 1990 EBV-BLMF1 EBV 0.78 2531 NEG 144 1846 12 EBV BLMF1 GLCTLVAML effector T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*02:01 B2M MHCI -2975 chip0420_587039 14.42 10.36 Chip1 T1D_1 T1D TGTGCCAGCAGTCCGGACCAAACTAGCTCCTACAATGAGCAGTTCTTC CASSPDQTSSYNEQFF TRBV27*01 TRBJ2-1*01 92.0 5982.0 _CASSPDQTSSYNEQFF 47 3397 EBV-BRLF1 EBV 0.8 1264 EBV-BRLF1 116 3281 12 EBV BRLF1 YVLDHLIVV effector T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*02:01 B2M MHCI -2976 chip0420_552145 11.55 8.01 Chip1 T1D_2 T1D TGTGCCTGGAGTGACCAACTAGGGGCGGCACGAGAGCTGTTTCTT CAWSDQLGAARELFL TRBV30*01 TRBJ2-2*01 32.0 1868.0 _CAWSDQLGAARELFL 1 2916 EBV-BRLF1 EBV 1.0 1264 EBV-BRLF1 124 2792 10 EBV BRLF1 YVLDHLIVV effector memory T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*02:01 B2M MHCI -2977 chip0420_126877 10.87 9.64 Chip1 T1D_1 T1D TGTGCCAGCAGCCAAAGCCCGGGTGGTACGCAGTATTTT CASSQSPGGTQYF TRBV14*01 TRBJ2-3*01 13.0 633.0 _CASSQSPGGTQYF 94 3652 EBV-BLMF1 EBV 1.0 2531 NEG 133 3519 9 EBV BLMF1 GLCTLVAML effector memory T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*02:01 B2M MHCI -2978 chip0420_687573 10.0 10.07 Chip1 T1D_2 T1D TGCAGCGTGTGCATACTAGCCCAGAATTACAATGAGCAGTTCTTC CSVCILAQNYNEQFF TRBV29-1*01 TRBJ2-1*01 7.0 381.0 _CSVCILAQNYNEQFF 88 3079 PGT-178 PGT 0.41 1480 NEG 130 2949 9 HomoSapiens PGT LLAGIGTVPI effector memory T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*02:01 B2M MHCI -2979 chip0420_548462 12.35 7.14 Chip1 T1D_2 T1D TGCAGCGTTGACCAAAGGACATGGCAAAAGAAGAACTATGGCTACACCTTC CSVDQRTWQKKNYGYTF TRBV29-1*01 TRBJ1-2*01 97.0 4439.0 _CSVDQRTWQKKNYGYTF 1 2200 EBV-BLMF1 EBV 0.45 2531 NEG 154 2046 10 EBV BLMF1 GLCTLVAML effector memory T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*02:01 B2M MHCI -2980 chip0420_208865 14.6 10.64 Chip1 T1D_2 T1D TGTGTGGTGAACGGCAGGGATAGCAGCTATAAATTGATCTTC CVVNGRDSSYKLIF TRAV12-1*01 TRAJ12*01 49.0 2080.0 TGTGCCAGCAGCTCGGGACTAGTCGCCCCCGGGGAGCTGTTTTTT CASSSGLVAPGELFF TRBV2*01 TRBJ2-2*01 3.0 188.0 CVVNGRDSSYKLIF_CASSSGLVAPGELFF 98 2290 EBV-BLMF1 EBV 0.6 2531 NEG 138 2152 12 EBV BLMF1 GLCTLVAML effector T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*02:01 B2M MHCI -2981 chip0420_101586 8.07 11.47 Chip1 T1D_1 T1D TGTGCCAGCAGCTCTCCCCGGGACTATGCCAATGAGCAGTTCTTC CASSSPRDYANEQFF TRBV7-9*01 TRBJ2-1*01 16.0 1048.0 _CASSSPRDYANEQFF 1 3446 PGT-178 PGT 0.96 1480 PGT-178 129 3317 7 HomoSapiens PGT LLAGIGTVPI transitional T cells between effector and memory populations PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*02:01 B2M MHCI -2982 chip0420_587468 -2.19 8.03 Chip1 T1D_1 T1D TGTGCAGCTACCTTCTTCTGTACTACCTCCCGCGCCTACAAATACATCTTT CAATFFCTTSRAYKYIF TRAV29/DV5*01 TRAJ40*01 8.0 250.0 CAATFFCTTSRAYKYIF_ 1 4765 ZNT8-115-123 ZNT8 0.45 74 ZNT8-115-123 145 4620 3 HomoSapiens ZNT8 LLSLFSLWL Naive T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*02:01 B2M MHCI -2983 chip0420_384748 6.34 14.23 Chip1 T1D_1 T1D TGTGCCAGTAGTGTCAGGGCAGGAGAGACCCAGTACTTC CASSVRAGETQYF TRBV19*01 TRBJ2-5*01 11.0 397.0 _CASSVRAGETQYF 23 3763 M1 FLU 0.72 1250 M1 140 3623 7 InfluenzaA M1 GILGFVFTL transitional T cells between effector and memory populations PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*02:01 B2M MHCI -2984 chip0420_299262 11.34 9.09 Chip1 T1D_2 T1D _ 6746 2806 EBV-BRLF1 EBV 1.0 1264 EBV-BRLF1 129 2677 10 EBV BRLF1 YVLDHLIVV effector memory T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*02:01 B2M MHCI -2985 chip0420_183182 10.85 10.08 Chip1 T1D_1 T1D TGTGCCAGCAGTTCGGGACAGGTACTTCCCAATGAGCAGTTCTTC CASSSGQVLPNEQFF TRBV2*01 TRBJ2-1*01 3.0 174.0 _CASSSGQVLPNEQFF 61 4234 EBV-BLMF1 EBV 0.47 2531 NEG 116 4118 9 EBV BLMF1 GLCTLVAML effector memory T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*02:01 B2M MHCI -2986 chip0420_136301 7.05 13.73 Chip1 T1D_1 T1D TGTGCCAGTAGCCAGGGGGCCTATGGCTCCACCTTC CASSQGAYGSTF TRBV19*01 TRBJ1-2*01 5.0 533.0 _CASSQGAYGSTF 1 3178 M1 FLU 0.41 1250 M1 147 3031 7 InfluenzaA M1 GILGFVFTL transitional T cells between effector and memory populations PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*02:01 B2M MHCI -2987 chip0420_228086 11.1 10.31 Chip1 T1D_2 T1D TGTACTTCCCTAACCCCGGGGGCTTCCAAGATAATCTTT CTSLTPGASKIIF TRAV8-6*01 TRAJ3*01 29.0 2209.0 TGTGCCAGCAGCTCGGGACTAGTCGCCCCCGGGGAGCTGTTTTTT CASSSGLVAPGELFF TRBV2*01 TRBJ2-2*01 36.0 2109.0 CTSLTPGASKIIF_CASSSGLVAPGELFF 1 4437 EBV-BLMF1 EBV 0.56 2531 NEG 139 4298 9 EBV BLMF1 GLCTLVAML effector memory T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*02:01 B2M MHCI -2988 chip0420_471077 -3.88 11.74 Chip1 T1D_1 T1D TGTGCCAGCAGCGGAGGACAGGGCAAGCAGTTCTTC CASSGGQGKQFF TRBV2*01 TRBJ2-1*01 6.0 300.0 _CASSGGQGKQFF 1 3667 PGT-178 PGT 0.81 1480 PGT-178 126 3541 1 HomoSapiens PGT LLAGIGTVPI Naive T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*02:01 B2M MHCI -2989 chip0420_329808 12.33 7.7 Chip1 T1D_2 T1D _ 6746 2804 EBV-BRLF1 EBV 0.56 1264 NEG 140 2664 10 EBV BRLF1 YVLDHLIVV effector memory T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*02:01 B2M MHCI -2990 chip0420_625781 12.98 8.27 Chip1 T1D_1 T1D TGTGCCACCCAACAGGGGAGGGACAGTCAGCCCCAGCATTTT CATQQGRDSQPQHF TRBV28*01 TRBJ1-5*01 1.0 47.0 _CATQQGRDSQPQHF 52 4129 EBV-BLMF1 EBV 0.62 2531 NEG 141 3988 10 EBV BLMF1 GLCTLVAML effector memory T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*02:01 B2M MHCI -2991 chip0420_802528 4.78 10.5 Chip1 T1D_1 T1D TGTGCAGGAGCCAGCAACACAGGCAAACTAATCTTT CAGASNTGKLIF TRAV27*01 TRAJ37*01 4.0 508.0 CAGASNTGKLIF_ 1 3494 M1 FLU 0.75 1250 NEG 149 3345 6 InfluenzaA M1 GILGFVFTL central memory T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*02:01 B2M MHCI -2992 chip0420_571883 -2.08 7.6 Chip1 T1D_1 T1D TGTGCCAGCAGCTTAGAGGCGCTGAGCTCCTACAATGAGCAGTTCTTC CASSLEALSSYNEQFF TRBV7-2*01 TRBJ2-1*01 34.0 1167.0 _CASSLEALSSYNEQFF 1 4955 MART1-ALA MART1 0.9 269 MART1-ALA 114 4841 3 HomoSapiens MART1 ALAGIGILTV Naive T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*02:01 B2M MHCI -2993 chip0420_54090 10.6 7.94 Chip1 T1D_2 T1D TGCAGCGTGGGGACAGGGGGAACTAATGAAAAACTGTTTTTT CSVGTGGTNEKLFF TRBV29-1*01 TRBJ1-4*01 80.0 3425.0 _CSVGTGGTNEKLFF 638 4356 EBV-BLMF1 EBV 0.67 2531 NEG 125 4231 10 EBV BLMF1 GLCTLVAML effector memory T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*02:01 B2M MHCI -2994 chip0420_425510 10.88 10.71 Chip1 T1D_1 T1D _ 6746 3537 EBV-BLMF1 EBV 0.92 2531 NEG 111 3426 9 EBV BLMF1 GLCTLVAML effector memory T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*02:01 B2M MHCI -2995 chip0420_859243 10.73 9.23 Chip1 T1D_1 T1D _ 6746 3474 EBV-BLMF1 EBV 0.61 2531 NEG 143 3331 10 EBV BLMF1 GLCTLVAML effector memory T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*02:01 B2M MHCI -2996 chip0420_531777 8.54 13.55 Chip1 T1D_1 T1D TGTGCAGGCGGAGGAAGCCAAGGAAATCTCATCTTT CAGGGSQGNLIF TRAV27*01 TRAJ42*01 27.0 2017.0 TGTGCCAGTAGTATCCGCTCCGCCTACGAGCAGTACTTC CASSIRSAYEQYF TRBV19*01 TRBJ2-7*01 21.0 1389.0 CAGGGSQGNLIF_CASSIRSAYEQYF 1 2991 M1 FLU 0.65 1250 M1 130 2861 7 InfluenzaA M1 GILGFVFTL transitional T cells between effector and memory populations PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*02:01 B2M MHCI -2997 chip0420_116820 12.45 10.35 Chip1 T1D_1 T1D _ 6746 4398 EBV-BLMF1 EBV 0.88 2531 EBV-BLMF1 159 4239 9 EBV BLMF1 GLCTLVAML effector memory T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*02:01 B2M MHCI -2998 chip0420_347046 15.79 11.17 Chip1 T1D_1 T1D TGTGCCACCCAACAGGAGAGGGACAGTCAGCCCCAGCATTTT CATQQERDSQPQHF TRBV28*01 TRBJ1-5*01 16.0 764.0 _CATQQERDSQPQHF 2 1601 EBV-BLMF1 EBV 0.88 2531 NEG 129 1472 12 EBV BLMF1 GLCTLVAML effector T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*02:01 B2M MHCI -2999 chip0420_19277 10.81 11.61 Chip1 T1D_2 T1D TGTGCCAGCAGTGGAGGGGCGGTCGCGCCGAGTGAGCAGTTCTTC CASSGGAVAPSEQFF TRBV2*01 TRBJ2-1*01 43.0 3303.0 _CASSGGAVAPSEQFF 6 2446 EBV-BLMF1 EBV 0.67 2531 NEG 141 2305 9 EBV BLMF1 GLCTLVAML effector memory T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*02:01 B2M MHCI -3000 chip0420_385329 13.02 7.39 Chip1 T1D_2 T1D TGCAGCGTGGGGACAGGGGGAACTAATGAAAAACTGTTTTTT CSVGTGGTNEKLFF TRBV29-1*01 TRBJ1-4*01 76.0 4594.0 _CSVGTGGTNEKLFF 638 2397 EBV-BLMF1 EBV 0.8 2531 NEG 134 2263 10 EBV BLMF1 GLCTLVAML effector memory T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*02:01 B2M MHCI -3001 chip0420_498828 8.83 8.13 Chip1 T1D_1 T1D _ 6746 7854 EBV-BRLF1 EBV 0.72 1264 EBV-BRLF1 142 7712 8 EBV BRLF1 YVLDHLIVV effector memory T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*02:01 B2M MHCI -3002 chip0420_234699 11.21 12.26 Chip1 T1D_2 T1D TGCAGCGTGGGGACAGGGGGAACTAATGAAAAACTGTTTTTT CSVGTGGTNEKLFF TRBV29-1*01 TRBJ1-4*01 110.0 4616.0 _CSVGTGGTNEKLFF 638 2096 EBV-BLMF1 EBV 1.0 2531 NEG 127 1969 9 EBV BLMF1 GLCTLVAML effector memory T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*02:01 B2M MHCI -3003 chip0420_177770 12.15 7.11 Chip1 T1D_2 T1D _ 6746 3123 EBV-BRLF1 EBV 1.0 1264 EBV-BRLF1 114 3009 10 EBV BRLF1 YVLDHLIVV effector memory T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*02:01 B2M MHCI -3004 chip0420_548374 8.33 10.24 Chip1 T1D_2 T1D TGCAGCGTGGGGACAGGGGGAACTAATGAAAAACTGTTTTTT CSVGTGGTNEKLFF TRBV29-1*01 TRBJ1-4*01 111.0 6005.0 _CSVGTGGTNEKLFF 638 4357 EBV-BLMF1 EBV 0.64 2531 NEG 138 4219 8 EBV BLMF1 GLCTLVAML effector memory T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*02:01 B2M MHCI -3005 chip0420_81614 -3.57 10.48 Chip1 T1D_1 T1D TGCGCCAGCAGTGAGTATGACGGGGGATACAATGAGCAGTTCTTC CASSEYDGGYNEQFF TRBV10-1*01 TRBJ2-1*01 4.0 115.0 _CASSEYDGGYNEQFF 1 4730 GAG-433-442 HIV 0.67 19 NEG 120 4610 2 HIV-1 GAG FLGKIWPSYK Naive T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*02:01 B2M MHCI -3006 chip0420_517117 6.76 12.91 Chip1 T1D_1 T1D _ 6746 4529 M1 FLU 0.76 1250 M1 105 4424 7 InfluenzaA M1 GILGFVFTL transitional T cells between effector and memory populations PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*02:01 B2M MHCI -3007 chip0420_128052 11.96 9.49 Chip1 T1D_1 T1D _ 6746 3219 EBV-BLMF1 EBV 0.44 2531 NEG 121 3098 10 EBV BLMF1 GLCTLVAML effector memory T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*02:01 B2M MHCI -3008 chip0420_630000 9.79 10.52 Chip1 T1D_2 T1D TGCAGCGTTGACCAAAGGACAGGGCAAAAGAAGAACTATGGCTACACCTTC CSVDQRTGQKKNYGYTF TRBV29-1*01 TRBJ1-2*01 76.0 3536.0 _CSVDQRTGQKKNYGYTF 40 2716 EBV-BLMF1 EBV 0.69 2531 NEG 130 2586 9 EBV BLMF1 GLCTLVAML effector memory T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*02:01 B2M MHCI -3009 chip0420_426247 12.61 7.46 Chip1 T1D_2 T1D TGTGCCAGCAGTGAATGGACAGGGTATTTGCCCCAGCATTTT CASSEWTGYLPQHF TRBV6-1*01 TRBJ1-5*01 36.0 1297.0 _CASSEWTGYLPQHF 1 2321 EBV-BLMF1 EBV 0.71 2531 NEG 137 2184 10 EBV BLMF1 GLCTLVAML effector memory T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*02:01 B2M MHCI -3010 chip0420_91009 -1.42 6.95 Chip1 T1D_3 T1D TGTGCCGCAAGTTGCCTCAGGAAACACACCTCTTGTCTTT CAASCLag??gaNTPLVF TRAV13-1*01 TRAJ29*01 23.0 2035.0 CAASCLag??gaNTPLVF_ 1 5495 INS-WMR-10 INS 0.49 5 INS-WMR-10 127 5368 3 HomoSapiens INS WMRLLPLLAL Naive T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-B*08:01 B2M MHCI -3011 chip0420_135531 14.81 9.43 Chip1 T1D_1 T1D _ 6746 2727 EBV-BLMF1 EBV 1.0 2531 EBV-BLMF1 131 2596 12 EBV BLMF1 GLCTLVAML effector T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*02:01 B2M MHCI -3012 chip0420_425298 10.72 9.57 Chip1 T1D_1 T1D TGTGCCAGCAGTTCCGGAGGGAACGTGGATACGCAGTATTTT CASSSGGNVDTQYF TRBV7-3*01 TRBJ2-3*01 18.0 1002.0 _CASSSGGNVDTQYF 47 3640 EBV-BLMF1 EBV 0.9 2531 NEG 137 3503 9 EBV BLMF1 GLCTLVAML effector memory T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*02:01 B2M MHCI -3013 chip0420_844551 10.26 10.48 Chip1 T1D_1 T1D TGCAGCGTCGGCTCCAGGGGAACTAATGAAAAACTGTTTTTT CSVGSRGTNEKLFF TRBV29-1*01 TRBJ1-4*01 7.0 206.0 _CSVGSRGTNEKLFF 283 3354 EBV-BLMF1 EBV 0.5 2531 NEG 130 3224 9 EBV BLMF1 GLCTLVAML effector memory T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*02:01 B2M MHCI -3014 chip0420_675732 6.07 12.24 Chip1 healthy_2 healthy TGTGCCAGTGAGGGACAACAAAGGGATGAGCAGCTCTTC CASEGQQRDEQLF TRBV7-9*01 TRBJ2-1*01 38.0 1893.0 _CASEGQQRDEQLF 1 4583 NP44-52 FLU 0.63 474 NP44-52 116 4467 7 InfluenzaA NP CTELKLSDY transitional T cells between effector and memory populations PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*01:01 B2M MHCI -3015 chip0420_561320 9.54 12.25 Chip1 T1D_1 T1D TGTGCTGTGAACTCCGGGTATGCACTCAACTTC CAVNSGYALNF TRAV3*01 TRAJ41*01 26.0 2176.0 CAVNSGYALNF_ 1 2725 HCVNS4B-1807-1816 HCV 0.83 74 NEG 119 2606 7 HCV NS4B LLFNILGGWV transitional T cells between effector and memory populations PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*02:01 B2M MHCI -3016 chip0420_722248 8.84 9.83 Chip1 T1D_2 T1D _ 6746 3633 PREINS-34-42 INS 1.0 9 PREINS-34-42 144 3489 8 HomoSapiens PREINS HLVEALYLV effector memory T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*02:01 B2M MHCI -3017 chip0420_511159 12.65 10.95 Chip1 T1D_2 T1D TGTGTGGTGAACGGCAGGGATAGCAGCTATAAATTGATCTTC CVVNGRDSSYKLIF TRAV12-1*01 TRAJ12*01 1.0 25.0 TGTGCCAGCAGCTCGGGACTAGTCGCCCCCGGGGAGCTGTTTTTT CASSSGLVAPGELFF TRBV2*01 TRBJ2-2*01 26.0 1299.0 CVVNGRDSSYKLIF_CASSSGLVAPGELFF 98 2825 EBV-BLMF1 EBV 0.79 2531 NEG 148 2677 9 EBV BLMF1 GLCTLVAML effector memory T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*02:01 B2M MHCI -3018 chip0420_392409 15.15 10.75 Chip1 T1D_1 T1D TGTGCCAGCAGCCCAGTTAGCGGGTCAACCTACGAGCAGTACTTC CASSPVSGSTYEQYF TRBV3-1*01 TRBJ2-7*01 1.0 12.0 _CASSPVSGSTYEQYF 80 3598 EBV-BLMF1 EBV 0.72 2531 NEG 131 3467 12 EBV BLMF1 GLCTLVAML effector T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*02:01 B2M MHCI -3019 chip0420_142768 13.74 10.09 Chip1 T1D_1 T1D TGTGCCGTGAAGGGGTATGACAAGATCATCTTT CAVKGYDKIIF TRAV8-1*01 TRAJ30*01 57.0 4325.0 TGTGCCAGCAGTCCGGACCGAACTAGCTCCTACAATGAGCAGTTCTTC CASSPDRTSSYNEQFF TRBV27*01 TRBJ2-1*01 22.0 594.0 CAVKGYDKIIF_CASSPDRTSSYNEQFF 1 3144 EBV-BRLF1 EBV 0.9 1264 EBV-BRLF1 144 3000 12 EBV BRLF1 YVLDHLIVV effector T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*02:01 B2M MHCI -3020 chip0420_395390 -1.36 10.23 Chip1 T1D_3 T1D TACAGTGCTAGAGTTACAGGGGGCCCCTACGAGCAGTACTTC YSARVTGGPYEQYF TRBV20-1*01 TRBJ2-7*01 10.0 469.0 _YSARVTGGPYEQYF 1 5036 G6PC2-LTS-10 IGRP 0.87 59 G6PC2-LTS-10 124 4912 3 HomoSapiens G6PC2 LTSLTILQLY Naive T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*01:01 B2M MHCI -3021 chip0420_117412 11.55 7.35 Chip1 T1D_2 T1D TGCAGCGTTGGGGGCAGCTTCTATGGCTACACCTTC CSVGGSFYGYTF TRBV29-1*01 TRBJ1-2*01 56.0 5624.0 _CSVGGSFYGYTF 42 3007 EBV-BLMF1 EBV 0.85 2531 EBV-BLMF1 146 2861 10 EBV BLMF1 GLCTLVAML effector memory T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*02:01 B2M MHCI -3022 chip0420_78635 8.58 9.05 Chip1 T1D_2 T1D TGTGCAGCATACGCAGGCAACATGCTCACCTTT CAAYAGNMLTF TRAV29/DV5*01 TRAJ39*01 1.0 235.0 CAAYAGNMLTF_ 8 4212 EBV-BLMF1 EBV 1.0 2531 NEG 168 4044 8 EBV BLMF1 GLCTLVAML effector memory T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*02:01 B2M MHCI -3023 chip0420_500581 6.83 11.29 Chip1 T1D_2 T1D TGCGCCAGCAGCTTGGAGGGTCAGGCCAGCTCCTACGAGCAATACTTC CASSLEGQASSYEQYF TRBV5-1*01 TRBJ2-7*01 34.0 1631.0 _CASSLEGQASSYEQYF 9 4883 EBV-LMP2A EBV 0.97 700 EBV-LMP2A 131 4752 7 EBV LMP2A CLGGLLTMV transitional T cells between effector and memory populations PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*02:01 B2M MHCI -3024 chip0420_709353 7.67 13.82 Chip1 T1D_1 T1D _ 6746 2713 M1 FLU 0.85 1250 NEG 116 2597 7 InfluenzaA M1 GILGFVFTL transitional T cells between effector and memory populations PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*02:01 B2M MHCI -3025 chip0420_269518 12.08 6.45 Chip1 T1D_2 T1D TGTGCTATGGCCGGGCATTCAGGATCCAGCCCCCTCACCCTT CAMAGHSGSSPLTL TRAV17*01 TRAJ11*01 11.0 390.0 TGTGCCAGCAGCCGACAGGGCGGGAAGGATGGCTACACCTTC CASSRQGGKDGYTF TRBV6-1*01 TRBJ1-2*01 7.0 208.0 CAMAGHSGSSPLTL_CASSRQGGKDGYTF 1 4807 EBV-LMP2-FLY EBV 0.91 355 EBV-LMP2-FLY 148 4659 10 EBV LMP2 FLYALALLL effector memory T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*02:01 B2M MHCI -3026 chip0420_208241 14.65 12.46 Chip1 T1D_1 T1D _ 6746 2330 EBV-BRLF1 EBV 1.0 1264 NEG 123 2207 12 EBV BRLF1 YVLDHLIVV effector T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*02:01 B2M MHCI -3027 chip0420_760331 10.66 11.1 Chip1 T1D_1 T1D TGTGCCAGCAGCACGGGACAGCTATCGAACACCGGGGAGCTGTTTTTT CASSTGQLSNTGELFF TRBV9*01 TRBJ2-2*01 50.0 2897.0 _CASSTGQLSNTGELFF 82 3193 EBV-BLMF1 EBV 0.8 2531 NEG 142 3051 9 EBV BLMF1 GLCTLVAML effector memory T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*02:01 B2M MHCI -3028 chip0420_450490 9.83 9.6 Chip1 T1D_1 T1D TGCGGCACAGAGGAACCTAACGACTACAAGCTCAGCTTT CGTEEPNDYKLSF TRAV30*01 TRAJ20*01 22.0 1787.0 TGTGCCCGCCGCACGGGGCAGCTATCGAACACCGGGGAGCTGTTTTTT CARRTGQLSNTGELFF TRBV9*01 TRBJ2-2*01 3.0 209.0 CGTEEPNDYKLSF_CARRTGQLSNTGELFF 1 6227 EBV-BLMF1 EBV 0.69 2531 EBV-BLMF1 150 6077 9 EBV BLMF1 GLCTLVAML effector memory T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*02:01 B2M MHCI -3029 chip0420_852699 -1.03 8.77 Chip1 T1D_1 T1D TGTGCCAGCAGCGGCCGAACGAGAATAAAGAGCCGCGGCCAATGTCGTGACTTTC CASSGRTRI??aRAAANVVTF TRBV9*01 TRBJ2-6*01 15.0 1029.0 _CASSGRTRI??aRAAANVVTF 1 6353 IGRP-222-230 IGRP 0.56 10 IGRP-222-230 148 6205 4 HomoSapiens IGRP YLLLRVLNI Naive T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*02:01 B2M MHCI -3030 chip0420_739388 -0.11 8.9 Chip1 T1D_1 T1D _ 6746 5394 PGT-178 PGT 0.59 1480 NEG 129 5265 4 HomoSapiens PGT LLAGIGTVPI Naive T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*02:01 B2M MHCI -3031 chip0420_533068 -0.13 8.59 Chip1 T1D_1 T1D _ 6746 6148 IGRP-152-160-MLI IGRP 0.43 6 NEG 111 6037 4 HomoSapiens IGRP FLWSVFMLI Naive T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*02:01 B2M MHCI -3032 chip0420_49623 -1.86 10.25 Chip1 T1D_1 T1D _ 6746 4019 PGT-178 PGT 0.7 1480 PGT-178 132 3887 4 HomoSapiens PGT LLAGIGTVPI Naive T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*02:01 B2M MHCI -3033 chip0420_10498 -0.66 7.5 Chip1 T1D_1 T1D _ 6746 6106 PGT-178 PGT 0.84 1480 PGT-178 121 5985 3 HomoSapiens PGT LLAGIGTVPI Naive T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*02:01 B2M MHCI -3034 chip0420_877064 15.79 10.64 Chip1 T1D_1 T1D TGCAGCGTCGGCTCCAGGGGAACTAATGAAAAACTGTTTTTT CSVGSRGTNEKLFF TRBV29-1*01 TRBJ1-4*01 81.0 4358.0 _CSVGSRGTNEKLFF 283 2519 EBV-BLMF1 EBV 0.57 2531 NEG 139 2380 12 EBV BLMF1 GLCTLVAML effector T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*02:01 B2M MHCI -3035 chip0420_325303 -1.33 8.88 Chip1 T1D_1 T1D TGTGCCAGCAGCTTGTTCGGGATCTACGAGCAGTACTTC CASSLFGIYEQYF TRBV5-6*01 TRBJ2-7*01 21.0 1201.0 _CASSLFGIYEQYF 1 6221 PGT-178 PGT 0.46 1480 PGT-178 130 6091 4 HomoSapiens PGT LLAGIGTVPI Naive T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*02:01 B2M MHCI -3036 chip0420_175434 5.92 12.78 Chip1 T1D_1 T1D TGTGCCAGTAGTATGGGGGCGCATGGCTACACCTTC CASSMGAHGYTF TRBV19*01 TRBJ1-2*01 9.0 300.0 _CASSMGAHGYTF 6 5222 M1 FLU 0.73 1250 M1 129 5093 7 InfluenzaA M1 GILGFVFTL transitional T cells between effector and memory populations PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*02:01 B2M MHCI -3037 chip0420_51304 10.94 11.46 Chip1 T1D_2 T1D TGCGCCAGCAGAGCGGGAGCCGGGGATACGCAGTATTTT CASRAGAGDTQYF TRBV10-2*01 TRBJ2-3*01 53.0 3371.0 _CASRAGAGDTQYF 59 2261 EBV-BLMF1 EBV 0.88 2531 NEG 132 2129 9 EBV BLMF1 GLCTLVAML effector memory T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*02:01 B2M MHCI -3038 chip0420_117429 10.38 9.09 Chip1 T1D_1 T1D _ 6746 3962 EBV-BLMF1 EBV 0.62 2531 NEG 137 3825 10 EBV BLMF1 GLCTLVAML effector memory T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*02:01 B2M MHCI -3039 chip0420_639394 -2.21 13.25 Chip1 T1D_1 T1D _ 6746 3152 ZNT8-16-24 ZNT8 0.81 39 NEG 115 3037 1 HomoSapiens ZNT8 KMYAFTLES Naive T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*02:01 B2M MHCI -3040 chip0420_690201 11.12 12.56 Chip1 T1D_2 T1D TGTGCCTTAGGAGGACTGACCTTT CALGGLTF TRAV8-1*01 TRAJ22*01 1.0 16.0 TGCGCCAGCAGAGCGGGAGCCGGGGATACGCAGTATTTT CASRAGAGDTQYF TRBV10-2*01 TRBJ2-3*01 13.0 663.0 CALGGLTF_CASRAGAGDTQYF 1 1893 EBV-BLMF1 EBV 0.75 2531 NEG 143 1750 11 EBV BLMF1 GLCTLVAML effector T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*02:01 B2M MHCI -3041 chip0420_108359 11.88 7.24 Chip1 T1D_1 T1D TGTGCCAGCAGTGACGGTCGGGTCCACCCGGGGACCCAGTACTTC CASSDGRVHPGTQYF TRBV2*01 TRBJ2-5*01 30.0 1532.0 _CASSDGRVHPGTQYF 24 3982 EBV-BLMF1 EBV 1.0 2531 NEG 136 3846 10 EBV BLMF1 GLCTLVAML effector memory T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*02:01 B2M MHCI -3042 chip0420_219905 7.27 13.07 Chip1 T1D_1 T1D TGTGCCAGTAGTATTGGGTCTGGTGAGCAGTTCTTC CASSIGSGEQFF TRBV19*01 TRBJ2-1*01 15.0 801.0 _CASSIGSGEQFF 2 3339 M1 FLU 0.8 1250 M1 121 3218 7 InfluenzaA M1 GILGFVFTL transitional T cells between effector and memory populations PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*02:01 B2M MHCI -3043 chip0420_618787 14.79 9.18 Chip1 T1D_1 T1D _ 6746 3259 EBV-BLMF1 EBV 0.58 2531 NEG 130 3129 12 EBV BLMF1 GLCTLVAML effector T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*02:01 B2M MHCI -3044 chip0420_544919 14.18 10.0 Chip1 T1D_1 T1D TGTGCCAGCAGTCCGGACCAAACTAGCTCCTACAATGAGCAATTCTTC CASSPDQTSSYNEQFF TRBV27*01 TRBJ2-1*01 44.0 2402.0 _CASSPDQTSSYNEQFF 47 2512 EBV-BRLF1 EBV 0.91 1264 EBV-BRLF1 138 2374 12 EBV BRLF1 YVLDHLIVV effector T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*02:01 B2M MHCI -3045 chip0420_393087 6.85 13.43 Chip1 T1D_1 T1D _ 6746 4057 M1 FLU 1.0 1250 NEG 116 3941 7 InfluenzaA M1 GILGFVFTL transitional T cells between effector and memory populations PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*02:01 B2M MHCI -3046 chip0420_92724 -4.3 10.34 Chip1 T1D_1 T1D TGTGCAGCTAACGAATATGGAAACAAACTGGTCTTT CAANEYGNKLVF TRAV29/DV5*01 TRAJ47*01 1.0 23.0 TGTGCCAGCAGTTCGACTAGCGGGACAGGTTCCTACAATGAGCAGTTCTTC CASSSTSGTGSYNEQFF TRBV27*01 TRBJ2-1*01 13.0 542.0 CAANEYGNKLVF_CASSSTSGTGSYNEQFF 1 4969 GP160-311-320 HIV 0.56 109 NEG 119 4850 2 HIV-1 GP160 RGPGRAFVTI Naive T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*02:01 B2M MHCI -3047 chip0420_46875 7.03 10.6 Chip1 T1D_2 T1D TGCAGCGTGGGGACACCTCCAACTAATGAAAAACTGTTTTTT CSVGTPPTNEKLFF TRBV29-1*01 TRBJ1-4*01 92.0 4614.0 _CSVGTPPTNEKLFF 23 5001 EBV-BLMF1 EBV 0.56 2531 NEG 131 4870 7 EBV BLMF1 GLCTLVAML transitional T cells between effector and memory populations PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*02:01 B2M MHCI -3048 chip0420_419353 8.65 13.93 Chip1 T1D_1 T1D _ 6746 1936 M1 FLU 0.83 1250 M1 126 1810 11 InfluenzaA M1 GILGFVFTL effector T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*02:01 B2M MHCI -3049 chip0420_32654 9.3 10.43 Chip1 T1D_2 T1D CGTGCCCGCCGCTTAGTGTGAGACAAAGTGGGGGCTTTCTTT RARRLV*DKVGAFF TRBV7-4*01 TRBJ1-1*01 11.0 469.0 _RARRLV*DKVGAFF 1 3586 EBV-BRLF1 EBV 0.88 1264 EBV-BRLF1 146 3440 9 EBV BRLF1 YVLDHLIVV effector memory T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*02:01 B2M MHCI -3050 chip0420_809374 13.27 12.39 Chip1 T1D_1 T1D TGTGCCAGCAGCCAAAGCCCGGGTGGTACGCAGTATTTT CASSQSPGGTQYF TRBV14*01 TRBJ2-3*01 7.0 277.0 _CASSQSPGGTQYF 94 2489 EBV-BLMF1 EBV 0.7 2531 NEG 137 2352 11 EBV BLMF1 GLCTLVAML effector T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*02:01 B2M MHCI -3051 chip0420_245651 8.07 13.88 Chip1 T1D_1 T1D _ 6746 2987 M1 FLU 0.92 1250 NEG 130 2857 7 InfluenzaA M1 GILGFVFTL transitional T cells between effector and memory populations PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*02:01 B2M MHCI -3052 chip0420_183556 15.96 12.04 Chip1 T1D_1 T1D TGCGGCCCAGAGGAACCTAACGACTACAAGCTCAGCTTT CGPEEPNDYKLSF TRAV30*01 TRAJ20*01 14.0 1088.0 TGTGCCAGCAGTTTTCTCGGGACAGGTCTCAACGAGCAGTACTTC CASSFLGTGLNEQYF TRBV28*01 TRBJ2-7*01 27.0 1694.0 CGPEEPNDYKLSF_CASSFLGTGLNEQYF 1 1610 EBV-BLMF1 EBV 0.6 2531 NEG 118 1492 12 EBV BLMF1 GLCTLVAML effector T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*02:01 B2M MHCI -3053 chip0420_71981 -3.66 9.03 Chip1 T1D_1 T1D TGCGCAATGAGCATATCTAACTTTGGAAATGAGAAATTAACCTTT CAMSISNFGNEKLTF TRAV12-3*01 TRAJ48*01 50.0 2003.0 CAMSISNFGNEKLTF_ 13 5449 PGT-178 PGT 0.7 1480 PGT-178 125 5324 2 HomoSapiens PGT LLAGIGTVPI Naive T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*02:01 B2M MHCI -3054 chip0420_840803 8.56 9.19 Chip1 T1D_3 T1D _ 6746 5198 BZLF1-190-197 EBV 0.54 2156 NEG 118 5080 8 EBV BZLF1 RAKFKQLL effector memory T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-B*08:01 B2M MHCI -3055 chip0420_387805 12.8 7.26 Chip1 T1D_2 T1D TGCAGCGTGGGGACAGGGGGAACTAATGAAAAACTGTTTTTT CSVGTGGTNEKLFF TRBV29-1*01 TRBJ1-4*01 65.0 3049.0 _CSVGTGGTNEKLFF 638 3278 EBV-BLMF1 EBV 0.53 2531 NEG 147 3131 10 EBV BLMF1 GLCTLVAML effector memory T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*02:01 B2M MHCI -3056 chip0420_573059 -2.55 8.12 Chip1 T1D_2 T1D TGTGCCAGCAGTTACTCGATCTCGCCAGATACGCAGTATTTT CASSYSISPDTQYF TRBV6-2*01,TRBV6-3*01 TRBJ2-3*01 18.0 592.0 _CASSYSISPDTQYF 1 5445 MART1-ALA MART1 0.83 269 MART1-ALA 135 5310 3 HomoSapiens MART1 ALAGIGILTV Naive T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*02:01 B2M MHCI -3057 chip0420_315019 8.78 11.46 Chip1 T1D_2 T1D TGTGCCAGCAGTTTATCAGTACTCTCCTACAATGAGCAGTTCTTC CASSLSVLSYNEQFF TRBV27*01 TRBJ2-1*01 87.0 5732.0 _CASSLSVLSYNEQFF 2 3078 EBV-BRLF1 EBV 0.98 1264 EBV-BRLF1 132 2946 9 EBV BRLF1 YVLDHLIVV effector memory T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*02:01 B2M MHCI -3058 chip0420_260869 13.29 7.05 Chip1 T1D_1 T1D CGTGCCAGCAGCCCAGTTAGCGGGTCAACCTACGAGCAGTACTTC RASSPVSGSTYEQYF TRBV3-1*01 TRBJ2-7*01 40.0 2584.0 _RASSPVSGSTYEQYF 1 2617 EBV-BLMF1 EBV 0.7 2531 EBV-BLMF1 110 2507 10 EBV BLMF1 GLCTLVAML effector memory T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*02:01 B2M MHCI -3059 chip0420_230981 9.21 9.34 Chip1 T1D_3 T1D _ 6746 3542 BZLF1-190-197 EBV 0.89 2156 NEG 140 3402 8 EBV BZLF1 RAKFKQLL effector memory T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-B*08:01 B2M MHCI -3060 chip0420_634542 13.41 13.62 Chip1 T1D_1 T1D _ 6746 2245 EBV-BLMF1 EBV 0.8 2531 NEG 129 2116 11 EBV BLMF1 GLCTLVAML effector T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*02:01 B2M MHCI -3061 chip0420_521047 15.85 9.76 Chip1 T1D_1 T1D TGTGCCAGCGGCACTGAAGCTTTCTTT CASGTEAFF TRBV6-1*01 TRBJ1-1*01 12.0 598.0 _CASGTEAFF 1 2358 EBV-BLMF1 EBV 1.0 2531 NEG 131 2227 12 EBV BLMF1 GLCTLVAML effector T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*02:01 B2M MHCI -3062 chip0420_192651 12.97 7.42 Chip1 T1D_1 T1D TGTGCCAGCAGTCCGGACCAAACTAGCTCCTACAATGAGCAGTTCTTC CASSPDQTSSYNEQFF TRBV27*01 TRBJ2-1*01 23.0 1815.0 _CASSPDQTSSYNEQFF 47 2841 EBV-BRLF1 EBV 1.0 1264 EBV-BRLF1 142 2699 10 EBV BRLF1 YVLDHLIVV effector memory T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*02:01 B2M MHCI -3063 chip0420_858383 5.36 12.6 Chip1 T1D_1 T1D _ 6746 4124 M1 FLU 0.68 1250 NEG 110 4014 7 InfluenzaA M1 GILGFVFTL transitional T cells between effector and memory populations PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*02:01 B2M MHCI -3064 chip0420_696177 13.48 10.08 Chip1 T1D_1 T1D TGTGCCAGCAGCACGGGACAGCTATCGAACACCGGGGAGCTGTTTTTT CASSTGQLSNTGELFF TRBV9*01 TRBJ2-2*01 20.0 750.0 _CASSTGQLSNTGELFF 82 3262 EBV-BLMF1 EBV 0.65 2531 NEG 152 3110 12 EBV BLMF1 GLCTLVAML effector T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*02:01 B2M MHCI -3065 chip0420_160613 10.68 10.38 Chip1 T1D_2 T1D TGTGCAGGGTCTGGGGCTGGGAGTTACCAACTCACTTTC CAGSGAGSYQLTF TRAV25*01 TRAJ28*01 1.0 23.0 TGCGCCAGCAGCTTGGAGGGTCAGGCCAGCTCCTACGAGCAGTACTTC CASSLEGQASSYEQYF TRBV5-1*01 TRBJ2-7*01 107.0 5232.0 CAGSGAGSYQLTF_CASSLEGQASSYEQYF 2 2830 EBV-LMP2A EBV 0.88 700 EBV-LMP2A 141 2689 9 EBV LMP2A CLGGLLTMV effector memory T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*02:01 B2M MHCI -3066 chip0420_556480 14.78 11.19 Chip1 T1D_2 T1D TGTGCCGTGAAGGACACCGACAAGCTCATCTTT CAVKDTDKLIF TRAV8-1*01 TRAJ34*01 1.0 68.0 CAVKDTDKLIF_ 56 1755 EBV-BRLF1 EBV 1.0 1264 NEG 112 1643 12 EBV BRLF1 YVLDHLIVV effector T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*02:01 B2M MHCI -3067 chip0420_884076 -3.69 9.11 Chip1 T1D_1 T1D TGCAGTGCGCGGGACAGGGGGCTCTACGAGCAGTACTTC CSARDRGLYEQYF TRBV20-1*01 TRBJ2-7*01 15.0 1039.0 _CSARDRGLYEQYF 1 4945 PGT-178 PGT 0.76 1480 NEG 121 4824 2 HomoSapiens PGT LLAGIGTVPI Naive T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*02:01 B2M MHCI -3068 chip0420_534233 -2.12 10.3 Chip1 healthy_2 healthy _ 6746 4585 NP44-52 FLU 0.85 474 NP44-52 127 4458 3 InfluenzaA NP CTELKLSDY Naive T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*01:01 B2M MHCI -3069 chip0420_496961 -3.91 10.35 Chip1 T1D_1 T1D _ 6746 4803 GAG-77-86 HIV 0.8 15 NEG 146 4657 4 HIV-1 GAG SLYNTVATLY Naive T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*02:01 B2M MHCI -3070 chip0420_394837 11.62 6.45 Chip1 T1D_2 T1D _ 6746 4905 EBV-BLMF1 EBV 0.79 2531 EBV-BLMF1 155 4750 10 EBV BLMF1 GLCTLVAML effector memory T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*02:01 B2M MHCI -3071 chip0420_278423 -3.88 10.8 Chip1 T1D_1 T1D TGTGCTCTGAGTGAGGCGGACACGGGCAGGCGAGCACTTACTTTT CALSEADTGRRALTF TRAV19*01 TRAJ5*01 57.0 2156.0 TGTGCCAGCAGCTCGGGACTAGTCGCCCCCGGGGAGCTGTTTTTT CASSSGLVAPGELFF TRBV2*01 TRBJ2-2*01 1.0 76.0 CALSEADTGRRALTF_CASSSGLVAPGELFF 1 4948 GP160-311-320 HIV 0.75 109 GP160-311-320 122 4826 2 HIV-1 GP160 RGPGRAFVTI Naive T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*02:01 B2M MHCI -3072 chip0420_25165 5.96 12.07 Chip1 T1D_1 T1D TGTGCCAGTAGTATTTATGGAGGGAGCGGTGAAGCTTTCTTT CASSIYGGSGEAFF TRBV19*01 TRBJ1-1*01 2.0 55.0 _CASSIYGGSGEAFF 4 5450 M1 FLU 0.85 1250 NEG 118 5332 7 InfluenzaA M1 GILGFVFTL transitional T cells between effector and memory populations PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*02:01 B2M MHCI -3073 chip0420_672000 10.73 12.07 Chip1 T1D_1 T1D _ 6746 3950 EBV-BRLF1 EBV 0.95 1264 EBV-BRLF1 112 3838 11 EBV BRLF1 YVLDHLIVV effector T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*02:01 B2M MHCI -3074 chip0420_356028 9.64 7.97 Chip1 T1D_1 T1D TGTGCCAGCAGCCCAGTTAGCGGGTCAACCTACGAGCAGTACTTC CASSPVSGSTYEQYF TRBV3-1*01 TRBJ2-7*01 20.0 1251.0 _CASSPVSGSTYEQYF 80 3943 EBV-BLMF1 EBV 0.94 2531 EBV-BLMF1 135 3808 8 EBV BLMF1 GLCTLVAML effector memory T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*02:01 B2M MHCI -3075 chip0420_317680 15.5 10.09 Chip1 T1D_1 T1D TGCATCCTGAGACGCTATGGAGGAAGCCAAGGAAATCTCATCTTT CILRRYGGSQGNLIF TRAV26-2*01 TRAJ42*01 2.0 189.0 CILRRYGGSQGNLIF_ 9 2584 EBV-BLMF1 EBV 0.62 2531 NEG 119 2465 12 EBV BLMF1 GLCTLVAML effector T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*02:01 B2M MHCI -3076 chip0420_68782 10.04 7.26 Chip1 T1D_1 T1D _ 6746 3709 EBV-BRLF1 EBV 1.0 1264 NEG 131 3578 10 EBV BRLF1 YVLDHLIVV effector memory T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*02:01 B2M MHCI -3077 chip0420_273856 9.71 9.21 Chip1 T1D_2 T1D TGTGCCAGCAGCTCGGGACTAGTCGCCCCCGGGGAGCTGTTTTTT CASSSGLVAPGELFF TRBV2*01 TRBJ2-2*01 32.0 1642.0 _CASSSGLVAPGELFF 133 3505 EBV-BLMF1 EBV 0.6 2531 NEG 141 3364 8 EBV BLMF1 GLCTLVAML effector memory T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*02:01 B2M MHCI -3078 chip0420_353974 11.16 12.24 Chip1 T1D_2 T1D _ 6746 2195 EBV-BRLF1 EBV 1.0 1264 NEG 127 2068 11 EBV BRLF1 YVLDHLIVV effector T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*02:01 B2M MHCI -3079 chip0420_293490 13.88 9.92 Chip1 T1D_1 T1D TGTGCCACCCAACAGGGGAGGGCCAGTCAGCCCCAGCATTTT CATQQGRASQPQHF TRBV28*01 TRBJ1-5*01 35.0 1734.0 _CATQQGRASQPQHF 4 2154 EBV-BLMF1 EBV 1.0 2531 NEG 128 2026 12 EBV BLMF1 GLCTLVAML effector T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*02:01 B2M MHCI -3080 chip0420_686846 -4.65 10.71 Chip1 T1D_1 T1D TGTGCTGTGACCCTTACAGCAGTGCTTCCCAGATAATCTTT CAVTLTgc?SASQIIF TRAV8-4*01 TRAJ3*01 36.0 2118.0 TGTGCCAGCAGTTTACAGGGGGCGCTTAATAATGAGCAGTTCTTC CASSLQGALNNEQFF TRBV12-3*01,TRBV12-4*01 TRBJ2-1*01 12.0 551.0 CAVTLTgc?SASQIIF_CASSLQGALNNEQFF 1 4507 ZNT8-293-300 ZNT8 0.74 17 ZNT8-293-300 124 4383 2 HomoSapiens ZNT8 LAVDGVLSV Naive T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*02:01 B2M MHCI -3081 chip0420_714731 4.75 11.9 Chip1 T1D_2 T1D _ 6746 4227 M1 FLU 0.94 1250 M1 123 4104 6 InfluenzaA M1 GILGFVFTL central memory T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*02:01 B2M MHCI -3082 chip0420_761516 9.6 9.66 Chip1 T1D_1 T1D TGCAGTGCTGCCGACCAAACCTACAATGAGCAGTTCTTC CSAADQTYNEQFF TRBV20-1*01 TRBJ2-1*01 2.0 144.0 _CSAADQTYNEQFF 5 5838 EBV-BRLF1 EBV 0.86 1264 EBV-BRLF1 128 5710 8 EBV BRLF1 YVLDHLIVV effector memory T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*02:01 B2M MHCI -3083 chip0420_416691 -2.1 8.28 Chip1 T1D_1 T1D TGTGCCAGTAGTGGGAGCTCTTACGAGCAGTACTTC CASSGSSYEQYF TRBV19*01 TRBJ2-7*01 4.0 397.0 _CASSGSSYEQYF 1 5528 IGRP-265-273 IGRP 0.89 34 IGRP-265-273 121 5407 3 HomoSapiens IGRP VLFGLGFAI Naive T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*02:01 B2M MHCI -3084 chip0420_41906 -0.12 6.35 Chip1 T1D_1 T1D TGTGCCAGCAGCACCCAGGCGGGGGGAGGTGAAGCTTTCTTT CASSTQAGGGEAFF TRBV9*01 TRBJ1-1*01 12.0 650.0 _CASSTQAGGGEAFF 1 7153 HCV-K1S HCV 0.62 10 NEG 115 7038 3 HCV POL SLVALGINAV Naive T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*02:01 B2M MHCI -3085 chip0420_881948 16.35 11.19 Chip1 T1D_1 T1D TGTGCAGAGGCGGCCAACCAGGCAGGCACTGCTCTGGTCTTT CAEAANQAGTALVF TRAV5*01 TRAJ15*01 46.0 2286.0 TGTGCCAGCAGCCAAAGCCCGGGTGGTACGCAGTATTTT CASSQSPGGTQYF TRBV14*01 TRBJ2-3*01 5.0 163.0 CAEAANQAGTALVF_CASSQSPGGTQYF 2 1774 EBV-BLMF1 EBV 0.67 2531 NEG 132 1642 12 EBV BLMF1 GLCTLVAML effector T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*02:01 B2M MHCI -3086 chip0420_776470 12.11 6.73 Chip1 T1D_1 T1D TGTGCCACTTTTCCGGACGGCTCCTACGAGCAGTACTTC CATFPDGSYEQYF TRBV28*01 TRBJ2-7*01 31.0 2426.0 _CATFPDGSYEQYF 6 4280 EBV-LMP1-1 EBV 1.0 237 NEG 149 4131 10 EBV LMP1 YLLEMLWRL effector memory T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*02:01 B2M MHCI -3087 chip0420_531986 13.49 8.24 Chip1 T1D_1 T1D TGTGCCGTGAAGGGGTATGACAAGATCATCGTT CAVKGYDKIIV TRAV8-1*01 TRAJ30*01 15.0 1121.0 CAVKGYDKIIV_ 1 1555 EBV-BRLF1 EBV 0.97 1264 EBV-BRLF1 139 1416 10 EBV BRLF1 YVLDHLIVV effector memory T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*02:01 B2M MHCI -3088 chip0420_379170 12.84 6.99 Chip1 T1D_2 T1D TGTGCCTGGCTCGTAGGGCCCTCCTACAATGAGCAGTTCTTC CAWLVGPSYNEQFF TRBV30*01 TRBJ2-1*01 5.0 237.0 _CAWLVGPSYNEQFF 1 3017 EBV-BRLF1 EBV 0.91 1264 EBV-BRLF1 133 2884 10 EBV BRLF1 YVLDHLIVV effector memory T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*02:01 B2M MHCI -3089 chip0420_169392 -4.73 9.02 Chip1 healthy_2 healthy _ 6746 4025 ZNT8-115-123 ZNT8 0.79 74 NEG 99 3926 2 HomoSapiens ZNT8 LLSLFSLWL Naive T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*02:01 B2M MHCI -3090 chip0420_248404 10.77 6.63 Chip1 T1D_1 T1D TGCAGCATTGAAGACTCTACCTACGAGCAGTACTTC CSIEDSTYEQYF TRBV29-1*01 TRBJ2-7*01 1.0 95.0 _CSIEDSTYEQYF 2 5145 EBV-LMP2-FLY EBV 0.95 355 EBV-LMP2-FLY 135 5010 10 EBV LMP2 FLYALALLL effector memory T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*02:01 B2M MHCI -3091 chip0420_250548 11.03 10.91 Chip1 T1D_1 T1D _ 6746 3671 EBV-BRLF1 EBV 0.5 1264 NEG 120 3551 9 EBV BRLF1 YVLDHLIVV effector memory T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*02:01 B2M MHCI -3092 chip0420_49423 11.19 9.42 Chip1 T1D_1 T1D TGTGCCAGCAGTTCCGGAGGGAACGTGGATACGCAGTATTTT CASSSGGNVDTQYF TRBV7-3*01 TRBJ2-3*01 18.0 1030.0 _CASSSGGNVDTQYF 47 4188 EBV-BLMF1 EBV 1.0 2531 NEG 127 4061 9 EBV BLMF1 GLCTLVAML effector memory T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*02:01 B2M MHCI -3093 chip0420_580438 8.78 8.42 Chip1 T1D_1 T1D _ 6746 4825 EBV-BLMF1 EBV 0.86 2531 NEG 119 4706 8 EBV BLMF1 GLCTLVAML effector memory T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*02:01 B2M MHCI -3094 chip0420_445172 14.09 7.3 Chip1 T1D_1 T1D _ 6746 4649 EBV-BRLF1 EBV 0.89 1264 EBV-BRLF1 148 4501 10 EBV BRLF1 YVLDHLIVV effector memory T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*02:01 B2M MHCI -3095 chip0420_454143 -0.89 8.34 Chip1 healthy_1 healthy TGTGCCAGCAGTCCGACAGGGGACGAGCAGTACTTC CASSPTGDEQYF TRBV27*01 TRBJ2-7*01 12.0 1149.0 _CASSPTGDEQYF 1 5101 PREINS-2-10 INS 0.69 37 PREINS-2-10 109 4992 4 HomoSapiens PREINS ALWMRLLPL Naive T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*02:01 B2M MHCI -3096 chip0420_109716 6.14 12.92 Chip1 healthy_1 healthy _ 6746 4343 M1 FLU 0.83 1250 M1 124 4219 7 InfluenzaA M1 GILGFVFTL transitional T cells between effector and memory populations PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*02:01 B2M MHCI -3097 chip0420_715798 -1.01 10.88 Chip1 T1D_1 T1D _ 6746 3987 MART1-A28L MART1 0.95 84 MART1-A28L 138 3849 3 HomoSapiens MART1 ALGIGILTV Naive T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*02:01 B2M MHCI -3098 chip0420_284335 10.7 7.72 Chip1 T1D_1 T1D TGTGCTGTGAGAGACAACCTCTTCACAGGCTTTCAGAAACTTGTATTT CAVRDNLFTGFQKLVF TRAV3*01 TRAJ8*01 2.0 67.0 TGTGCCTCACGCCGGGACGGCACTGAAGCTTTCTTT CASRRDGTEAFF TRAV41*01 TRAJ40*01 2.0 11.0 0.5 TGTGCCTCACGCCGGGACGGCACTGAAGCTTTCTTT CASRRDGTEAFF TRBV30*01 TRBJ1-1*01 51.0 3308.0 CAVRDNLFTGFQKLVF_CASRRDGTEAFF 1 3590 CVB3-P3A CVB 0.93 77 NEG 144 3446 6 CoxsackievirusB P3A GIIYIIYKL central memory T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*02:01 B2M MHCI -3099 chip0420_73664 9.92 11.14 Chip1 T1D_2 T1D TGCGGCGTGGGGTCAGGGGGAACTAATGCAAAACTGTTTTTT CGVGSGGTNAKLFF TRBV29-1*01 TRBJ1-4*01 3.0 59.0 _CGVGSGGTNAKLFF 1 4477 EBV-BLMF1 EBV 0.8 2531 NEG 136 4341 9 EBV BLMF1 GLCTLVAML effector memory T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*02:01 B2M MHCI -3100 chip0420_518250 10.48 8.99 Chip1 T1D_2 T1D TGTGCCGTGAAGGACACCGACACGCTCATCTTT CAVKDTDTLIF TRAV8-1*01 TRAJ34*01 13.0 1019.0 TGTGCCACCAGTGATTGGCTCGACGGAGATACGCAGTATTTT CATSDWLDGDTQYF TRBV24-1*01 TRBJ2-3*01 21.0 1403.0 CAVKDTDTLIF_CATSDWLDGDTQYF 1 2889 EBV-BRLF1 EBV 0.85 1264 EBV-BRLF1 148 2741 10 EBV BRLF1 YVLDHLIVV effector memory T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*02:01 B2M MHCI -3101 chip0420_11304 11.43 8.84 Chip1 T1D_1 T1D TGCGGCCCAGAGGAACCTAACGACTACAAGCTCAGCTTT CGPEEPNDYKLSF TRAV30*01 TRAJ20*01 48.0 3361.0 CGPEEPNDYKLSF_ 13 3133 EBV-BLMF1 EBV 0.56 2531 NEG 137 2996 10 EBV BLMF1 GLCTLVAML effector memory T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*02:01 B2M MHCI -3102 chip0420_674233 7.33 9.61 Chip1 tet_neg TGTGCCAGCAGGTTCACAGAGTCTGGGGCCAACGTCCTGACTTTC CASRFTESGANVLTF TRBV2*01 TRBJ2-6*01 26.0 1692.0 _CASRFTESGANVLTF 1 8244 IAPP-STN-9 IAPP 0.56 48 NEG 131 8113 7 HomoSapiens IAPP STNVGSNTY transitional T cells between effector and memory populations PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*01:01 B2M MHCI -3103 chip0420_643523 12.22 8.2 Chip1 T1D_1 T1D _ 6746 2050 EBV-BLMF1 EBV 0.55 2531 NEG 122 1928 10 EBV BLMF1 GLCTLVAML effector memory T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*02:01 B2M MHCI -3104 chip0420_167049 13.69 9.79 Chip1 T1D_1 T1D TGTGCCAGCAGTGAGGACACTCTCCTTAATGAGCAGTACTTC CASSEDTLLNEQYF TRBV2*01 TRBJ2-7*01 2.0 60.0 _CASSEDTLLNEQYF 1 3994 EBV-BRLF1 EBV 0.88 1264 EBV-BRLF1 134 3860 12 EBV BRLF1 YVLDHLIVV effector T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*02:01 B2M MHCI -3105 chip0420_790287 15.31 12.27 Chip1 T1D_1 T1D TGTGCCAGCAGGGGCCTGACAGGGGGCGGGAGTGAAGCTTTCTTT CASRGLTGGGSEAFF TRBV28*01 TRBJ1-1*01 19.0 740.0 _CASRGLTGGGSEAFF 2 1458 EBV-BRLF1 EBV 0.89 1264 NEG 122 1336 12 EBV BRLF1 YVLDHLIVV effector T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*02:01 B2M MHCI -3106 chip0420_580486 11.12 8.12 Chip1 T1D_2 T1D TGTGTGGTGAACGGCAGGGATAGCAGCTATAAATTGATCTTC CVVNGRDSSYKLIF TRAV12-1*01 TRAJ12*01 47.0 1994.0 TGTGCCAGCAGCTCGGGACTAGTCGCCCCCGGGGAGCTGTTTTTT CASSSGLVAPGELFF TRBV2*01 TRBJ2-2*01 26.0 1545.0 CVVNGRDSSYKLIF_CASSSGLVAPGELFF 98 3272 EBV-BLMF1 EBV 0.71 2531 NEG 139 3133 10 EBV BLMF1 GLCTLVAML effector memory T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*02:01 B2M MHCI -3107 chip0420_389513 5.47 12.47 Chip1 T1D_1 T1D _ 6746 4364 M1 FLU 0.83 1250 M1 133 4231 7 InfluenzaA M1 GILGFVFTL transitional T cells between effector and memory populations PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*02:01 B2M MHCI -3108 chip0420_863021 -2.36 13.55 Chip1 T1D_1 T1D _ 6746 3643 MART1-ALA MART1 0.52 269 NEG 115 3528 1 HomoSapiens MART1 ALAGIGILTV Naive T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*02:01 B2M MHCI -3109 chip0420_555891 11.67 8.24 Chip1 T1D_1 T1D TGCAGCGTCGGCTCCAGGGGAACTAATGAAAAACTGTTTTTT CSVGSRGTNEKLFF TRBV29-1*01 TRBJ1-4*01 36.0 1848.0 _CSVGSRGTNEKLFF 283 2821 EBV-BLMF1 EBV 0.5 2531 NEG 130 2691 10 EBV BLMF1 GLCTLVAML effector memory T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*02:01 B2M MHCI -3110 chip0420_530990 11.03 10.89 Chip1 T1D_1 T1D TGTATGGTGAACGGGGGGGATAGCAGCTATAAATTGATCTTC CMVNGGDSSYKLIF TRAV12-1*01 TRAJ12*01 12.0 956.0 TGTACCAGCAGTTCGGGACAGGTACTTCCCAATGAGCAGTTCTTC CTSSSGQVLPNEQFF TRBV2*01 TRBJ2-1*01 19.0 848.0 CMVNGGDSSYKLIF_CTSSSGQVLPNEQFF 1 4443 EBV-BLMF1 EBV 0.62 2531 NEG 110 4333 9 EBV BLMF1 GLCTLVAML effector memory T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*02:01 B2M MHCI -3111 chip0420_375889 -3.93 9.68 Chip1 T1D_1 T1D TGTGCCTGGAGGGACTCGGGGGAGCAGTTCTTC CAWRDSGEQFF TRBV30*01 TRBJ2-1*01 32.0 2835.0 _CAWRDSGEQFF 1 4571 ROTA-VP3 ROTA 0.44 41 NEG 123 4448 2 RotavirusA VP3 YLLPGWKL Naive T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*02:01 B2M MHCI -3112 chip0420_107071 10.67 6.48 Chip1 T1D_1 T1D _ 6746 7959 EBV-BLMF1 EBV 0.9 2531 NEG 143 7816 10 EBV BLMF1 GLCTLVAML effector memory T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*02:01 B2M MHCI -3113 chip0420_65027 10.68 7.02 Chip1 T1D_2 T1D TGTGCAGAGAGTACTTCGGGAGGAAAGCTTATCTTC CAESTSGGKLIF TRAV5*01 TRAJ23*01 30.0 2064.0 TGCAGCGTGGGGACAGGGGGAACTAATGAAAAACTGTTTTTT CSVGTGGTNEKLFF TRBV29-1*01 TRBJ1-4*01 103.0 4715.0 CAESTSGGKLIF_CSVGTGGTNEKLFF 107 3967 EBV-BLMF1 EBV 0.6 2531 NEG 149 3818 10 EBV BLMF1 GLCTLVAML effector memory T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*02:01 B2M MHCI -3114 chip0420_877357 13.79 10.07 Chip1 T1D_1 T1D _ 6746 3229 EBV-BLMF1 EBV 0.58 2531 NEG 120 3109 12 EBV BLMF1 GLCTLVAML effector T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*02:01 B2M MHCI -3115 chip0420_705390 10.77 10.32 Chip1 T1D_2 T1D TGCAGCGTTGGGGGCAGCTTCTATGGCTACACCTTC CSVGGSFYGYTF TRBV29-1*01 TRBJ1-2*01 24.0 2194.0 _CSVGGSFYGYTF 42 2789 EBV-BLMF1 EBV 0.75 2531 NEG 130 2659 9 EBV BLMF1 GLCTLVAML effector memory T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*02:01 B2M MHCI -3116 chip0420_584839 13.63 11.24 Chip1 T1D_2 T1D TGCAGCGTGGGGACAGGGGGAACTAATGAAAAACTGTTTTTT CSVGTGGTNEKLFF TRBV29-1*01 TRBJ1-4*01 74.0 3717.0 _CSVGTGGTNEKLFF 638 2229 EBV-BLMF1 EBV 0.6 2531 NEG 146 2083 9 EBV BLMF1 GLCTLVAML effector memory T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*02:01 B2M MHCI -3117 chip0420_740250 14.04 7.73 Chip1 T1D_1 T1D _ 6746 3427 EBV-BRLF1 EBV 0.73 1264 EBV-BRLF1 126 3301 10 EBV BRLF1 YVLDHLIVV effector memory T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*02:01 B2M MHCI -3118 chip0420_537378 -4.39 9.54 Chip1 T1D_1 T1D TGTGCAGAGACCACTCCCTCAGGCCCCTCCAAATACATCTTT CAETTPSGPSKYIF TRAV13-2*01 TRAJ40*01 52.0 2183.0 TGTGCCAGCAGTGCCCAGGCGGGACAGGGGGCCTACCTGAACACTGAAGCTTTCTTT CASSAQAGQGAYLNTEAFF TRBV25-1*01 TRBJ1-1*01 50.0 1093.0 CAETTPSGPSKYIF_CASSAQAGQGAYLNTEAFF 1 6040 GAD65-110-118 GAD65 0.9 4 GAD65-110-118 118 5922 2 HomoSapiens GAD65 FLQDVMNIL Naive T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*02:01 B2M MHCI -3119 chip0420_163561 6.02 13.11 Chip1 T1D_1 T1D TGTGCCAGTAGTGCCAGGTCCCAAGAGACCCAGTACTTC CASSARSQETQYF TRBV19*01 TRBJ2-5*01 10.0 709.0 _CASSARSQETQYF 1 4044 M1 FLU 0.79 1250 M1 120 3924 7 InfluenzaA M1 GILGFVFTL transitional T cells between effector and memory populations PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*02:01 B2M MHCI -3120 chip0420_7608 6.16 13.51 Chip1 healthy_1 healthy _ 6746 3779 M1 FLU 0.59 1250 M1 116 3663 7 InfluenzaA M1 GILGFVFTL transitional T cells between effector and memory populations PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*02:01 B2M MHCI -3121 chip0420_609355 7.65 10.87 Chip1 T1D_2 T1D TGTGGTACGGCGGGGAATTCAGAATAGAGCACACTTACCTTT CGTAGNSE*STLTF TRAV17*01 TRAJ11*01 13.0 150.0 CGTAGNSE*STLTF_ 1 4910 EBV-LMP2-FLY EBV 0.91 355 NEG 135 4775 7 EBV LMP2 FLYALALLL transitional T cells between effector and memory populations PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*02:01 B2M MHCI -3122 chip0420_453576 6.99 13.34 Chip1 T1D_1 T1D TGTGCCAGTAGTGTCAGGGCAGGAGAGACCCAGTACTTC CASSVRAGETQYF TRBV19*01 TRBJ2-5*01 27.0 2007.0 _CASSVRAGETQYF 23 3021 M1 FLU 0.77 1250 M1 116 2905 7 InfluenzaA M1 GILGFVFTL transitional T cells between effector and memory populations PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*02:01 B2M MHCI -3123 chip0420_813359 9.36 9.74 Chip1 T1D_1 T1D TGTGCCAGCAGCCCAGTTAGCGGGTCAACCTACGAGCAGTACTTC CASSPVSGSTYEQYF TRBV3-1*01 TRBJ2-7*01 7.0 358.0 _CASSPVSGSTYEQYF 80 5027 EBV-BLMF1 EBV 0.81 2531 EBV-BLMF1 131 4896 8 EBV BLMF1 GLCTLVAML effector memory T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*02:01 B2M MHCI -3124 chip0420_405081 13.42 7.16 Chip1 T1D_1 T1D TGCGGCACAGAGGAACCTAACGACTACAAGCTCAGCTTT CGTEEPNDYKLSF TRAV30*01 TRAJ20*01 1.0 50.0 CGTEEPNDYKLSF_ 22 2528 EBV-BLMF1 EBV 0.5 2531 NEG 131 2397 10 EBV BLMF1 GLCTLVAML effector memory T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*02:01 B2M MHCI -3125 chip0420_199869 5.99 12.85 Chip1 T1D_1 T1D _ 6746 4931 M1 FLU 0.85 1250 M1 142 4789 7 InfluenzaA M1 GILGFVFTL transitional T cells between effector and memory populations PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*02:01 B2M MHCI -3126 chip0420_72906 16.3 10.03 Chip1 T1D_1 T1D TGTGCAGAGGCGGCCAACCAGGCAGGAACTGCTCTGATCTTT CAEAANQAGTALIF TRAV5*01 TRAJ15*01 37.0 2056.0 TGTGCCAGCAGCCAAAGCCCGGGTGGTACGCAGTATTTT CASSQSPGGTQYF TRBV14*01 TRBJ2-3*01 2.0 106.0 CAEAANQAGTALIF_CASSQSPGGTQYF 9 2367 EBV-BLMF1 EBV 0.75 2531 NEG 146 2221 12 EBV BLMF1 GLCTLVAML effector T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*02:01 B2M MHCI -3127 chip0420_838808 7.4 13.94 Chip1 T1D_1 T1D TGTGCCAGCAGTTACCGGGACAAGAGCGCTGGAAACACCATATATTTT CASSYRDKSAGNTIYF TRBV28*01 TRBJ1-3*01 17.0 625.0 _CASSYRDKSAGNTIYF 2 3218 M1 FLU 0.89 1250 M1 128 3090 7 InfluenzaA M1 GILGFVFTL transitional T cells between effector and memory populations PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*02:01 B2M MHCI -3128 chip0420_398686 10.93 10.82 Chip1 T1D_1 T1D TGTGCCAGCAGCCACTTATTAGGGACAGGTTTTGGCTACACCTTC CASSHLLGTGFGYTF TRBV3-1*01 TRBJ1-2*01 40.0 2719.0 _CASSHLLGTGFGYTF 6 4674 EBV-BRLF1 EBV 0.95 1264 EBV-BRLF1 140 4534 9 EBV BRLF1 YVLDHLIVV effector memory T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*02:01 B2M MHCI -3129 chip0420_56166 -1.3 9.69 Chip1 T1D_2 T1D TGTGCAATGAGCGCGTCTAACTTTGGAAATGAGAAATTAACCTTT CAMSASNFGNEKLTF TRAV12-3*01 TRAJ48*01 2.0 42.0 TATGCCAGCAGTCCGAAAAGGAATGAGCAGTTCTTC YASSPKRNEQFF TRBV5-6*01 TRBJ2-1*01 38.0 2497.0 CAMSASNFGNEKLTF_YASSPKRNEQFF 1 6221 PGT-178 PGT 0.76 1480 PGT-178 109 6112 3 HomoSapiens PGT LLAGIGTVPI Naive T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*02:01 B2M MHCI -3130 chip0420_851883 5.84 13.14 Chip1 T1D_1 T1D TGTGCCAGTAGTGTCAGGGCAGGAGAGACCCAGTACTTC CASSVRAGETQYF TRBV19*01 TRBJ2-5*01 8.0 896.0 _CASSVRAGETQYF 23 5570 M1 FLU 0.97 1250 M1 130 5440 7 InfluenzaA M1 GILGFVFTL transitional T cells between effector and memory populations PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*02:01 B2M MHCI -3131 chip0420_414627 6.64 13.98 Chip1 T1D_1 T1D _ 6746 3943 M1 FLU 0.87 1250 M1 138 3805 7 InfluenzaA M1 GILGFVFTL transitional T cells between effector and memory populations PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*02:01 B2M MHCI -3132 chip0420_31270 5.9 11.41 Chip1 T1D_2 T1D TGCGCCAGCAGCGAGGACGGTATGAACACTGAAGCTTTCTTT CASSEDGMNTEAFF TRBV10-2*01 TRBJ1-1*01 16.0 809.0 _CASSEDGMNTEAFF 10 5337 EBV-LMP2A EBV 0.97 700 EBV-LMP2A 135 5202 6 EBV LMP2A CLGGLLTMV central memory T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*02:01 B2M MHCI -3133 chip0420_317432 14.36 11.62 Chip1 T1D_1 T1D CGCAGCGTCGGCTCCAGGGGAACTAATGAAAAACTGTTTTTT RSVGSRGTNEKLFF TRBV29-1*01 TRBJ1-4*01 24.0 1169.0 _RSVGSRGTNEKLFF 2 3093 EBV-BLMF1 EBV 0.41 2531 NEG 127 2966 12 EBV BLMF1 GLCTLVAML effector T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*02:01 B2M MHCI -3134 chip0420_800896 7.28 12.69 Chip1 healthy_1 healthy _ 6746 2824 EBV-BRLF1 EBV 0.92 1264 EBV-BRLF1 117 2707 7 EBV BRLF1 YVLDHLIVV transitional T cells between effector and memory populations PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*02:01 B2M MHCI -3135 chip0420_499576 9.95 7.57 Chip1 T1D_2 T1D TGTGCCAGCAGTGAATGGACAGGGTATCAGCCCCAGCATTTT CASSEWTGYQPQHF TRBV6-1*01 TRBJ1-5*01 38.0 902.0 _CASSEWTGYQPQHF 9 5005 EBV-BLMF1 EBV 0.75 2531 NEG 145 4860 10 EBV BLMF1 GLCTLVAML effector memory T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*02:01 B2M MHCI -3136 chip0420_402736 6.9 13.24 Chip1 T1D_1 T1D _ 6746 3821 M1 FLU 0.74 1250 M1 111 3710 7 InfluenzaA M1 GILGFVFTL transitional T cells between effector and memory populations PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*02:01 B2M MHCI -3137 chip0420_358635 10.05 10.8 Chip1 T1D_2 T1D TGTGCCAGCAGCTTAAACGCGGGAGAGTGGTATGGCTACACCTTC CASSLNAGEWYGYTF TRBV11-2*01 TRBJ1-2*01 1.0 27.0 _CASSLNAGEWYGYTF 3 3503 EBV-BLMF1 EBV 0.88 2531 EBV-BLMF1 128 3375 9 EBV BLMF1 GLCTLVAML effector memory T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*02:01 B2M MHCI -3138 chip0420_391062 8.53 11.35 Chip1 T1D_2 T1D TGTGCCGTGAAGGACACCGACAAGCTCATCTTT CAVKDTDKLIF TRAV8-1*01 TRAJ34*01 27.0 2064.0 TGTGCCAGCTCTTTGCCGGGCCTGAACTATGGCTACACCTTC CASSLPGLNYGYTF TRBV19*01 TRBJ1-2*01 27.0 2013.0 CAVKDTDKLIF_CASSLPGLNYGYTF 1 4221 EBV-BRLF1 EBV 0.93 1264 EBV-BRLF1 162 4059 7 EBV BRLF1 YVLDHLIVV transitional T cells between effector and memory populations PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*02:01 B2M MHCI -3139 chip0420_712896 0.06 8.78 Chip1 T1D_1 T1D TGTGCAATGAGCGGCTCTAACTTTGGAAATGAGAAATTAACCTTT CAMSGSNFGNEKLTF TRAV12-3*01 TRAJ48*01 116.0 5161.0 CAMSGSNFGNEKLTF_ 6 5308 PGT-178 PGT 0.71 1480 PGT-178 113 5195 4 HomoSapiens PGT LLAGIGTVPI Naive T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*02:01 B2M MHCI -3140 chip0420_441170 10.94 8.12 Chip1 T1D_2 T1D TGCGCCAGCAGAGCGGGAGCCGGGGATACGCAGTATTTT CASRAGAGDTQYF TRAV9-1*01 TRAJ40*01 2.0 7.0 TGCGCCAGCAGAGCGGGAGCCGGGGATACGCAGTATTTT CASRAGAGDTQYF TRBV10-2*01 TRBJ2-3*01 47.0 2970.0 CASRAGAGDTQYF_CASRAGAGDTQYF 4 3647 EBV-BLMF1 EBV 0.59 2531 NEG 138 3509 10 EBV BLMF1 GLCTLVAML effector memory T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*02:01 B2M MHCI -3141 chip0420_382330 11.2 8.35 Chip1 T1D_2 T1D TGCGCCAGCAGTGAGGACGGAATGAACACTGAAGCTTTCTTT CASSEDGMNTEAFF TRBV10-2*01 TRBJ1-1*01 21.0 801.0 _CASSEDGMNTEAFF 10 4526 EBV-LMP2A EBV 0.85 700 EBV-LMP2A 144 4382 10 EBV LMP2A CLGGLLTMV effector memory T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*02:01 B2M MHCI -3142 chip0420_375830 6.88 10.69 Chip1 T1D_1 T1D _ 6746 5210 M1 FLU 0.85 1250 M1 115 5095 7 InfluenzaA M1 GILGFVFTL transitional T cells between effector and memory populations PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*02:01 B2M MHCI -3143 chip0420_344509 7.09 10.39 Chip1 healthy_1 healthy TGTGCAGAGACGGGGAATGGAGGAAGCCAAGGAAATCTCATCTTT CAETGNGGSQGNLIF TRAV5*01 TRAJ42*01 2.0 387.0 TGTGCCAGTAGTGCCATAGGTTCCTCCTACAATGAGCAGTTCTTC CASSAIGSSYNEQFF TRBV19*01 TRBJ2-1*01 15.0 593.0 CAETGNGGSQGNLIF_CASSAIGSSYNEQFF 1 8117 M1 FLU 0.89 1250 M1 109 8008 7 InfluenzaA M1 GILGFVFTL transitional T cells between effector and memory populations PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*02:01 B2M MHCI -3144 chip0420_731555 13.98 10.97 Chip1 T1D_1 T1D TGTGCCACCCAACAGGGGAGGGACAGTCAGCCCCAGCATTTT CATQQGRDSQPQHF TRBV28*01 TRBJ1-5*01 35.0 1561.0 _CATQQGRDSQPQHF 52 2818 EBV-BLMF1 EBV 1.0 2531 NEG 135 2683 12 EBV BLMF1 GLCTLVAML effector T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*02:01 B2M MHCI -3145 chip0420_637350 12.56 13.92 Chip1 T1D_2 T1D TGCGCCAGCAGTCAATCGAGAGGGTCGCTCTGGGATACGCAGTATTTT CASSQSRGSLWDTQYF TRBV4-3*01 TRBJ2-3*01 128.0 6284.0 _CASSQSRGSLWDTQYF 21 979 EBV-BRLF1 EBV 1.0 1264 EBV-BRLF1 115 864 11 EBV BRLF1 YVLDHLIVV effector T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*02:01 B2M MHCI -3146 chip0420_482075 11.1 11.24 Chip1 T1D_2 T1D _ 6746 2387 EBV-BRLF1 EBV 0.75 1264 EBV-BRLF1 131 2256 9 EBV BRLF1 YVLDHLIVV effector memory T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*02:01 B2M MHCI -3147 chip0420_321156 10.84 7.63 Chip1 healthy_2 healthy TGTGGCACAGAGAATAGGAACACCGACAAGCTCATCTTT CGTENRNTDKLIF TRAV30*01 TRAJ34*01 6.0 735.0 CGTENRNTDKLIF_ 1 3597 BZLF1-190-197 EBV 0.46 2156 NEG 145 3452 10 EBV BZLF1 RAKFKQLL effector memory T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-B*08:01 B2M MHCI -3148 chip0420_184497 -2.13 8.36 Chip1 T1D_1 T1D TGTGCTTTCATTCAATATGGAAACAAACTGGTCTTT CAFIQYGNKLVF TRAV38-1*01 TRAJ47*01 5.0 448.0 TGTGCCAGCAGCTTAGACATCAACTATGGCTACACCTTC CASSLDINYGYTF TRBV13*01 TRBJ1-2*01 29.0 1756.0 CAFIQYGNKLVF_CASSLDINYGYTF 1 7250 ROTA-VP3 ROTA 0.69 41 NEG 138 7112 3 RotavirusA VP3 YLLPGWKL Naive T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*02:01 B2M MHCI -3149 chip0420_545111 6.68 11.67 Chip1 T1D_1 T1D CTGTGCCCGTAGTATGGGTGGCTGTGGCTACAGCTTC LCP*YG??tGCGYSF TRBV19*01 TRBJ1-2*01 4.0 351.0 _LCP*YG??tGCGYSF 1 3462 M1 FLU 0.72 1250 M1 138 3324 7 InfluenzaA M1 GILGFVFTL transitional T cells between effector and memory populations PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*02:01 B2M MHCI -3150 chip0420_528582 12.72 10.94 Chip1 T1D_2 T1D TGTGCAGAGAGTACTTCGGGAGGAAAGCTTATCTTC CAESTSGGKLIF TRAV5*01 TRAJ23*01 23.0 1269.0 TGCAGCGTGGGGACAGGGGGAACTAATGAAAAACTGTTTTTT CSVGTGGTNEKLFF TRBV29-1*01 TRBJ1-4*01 66.0 3099.0 CAESTSGGKLIF_CSVGTGGTNEKLFF 107 2581 EBV-BLMF1 EBV 0.5 2531 NEG 147 2434 9 EBV BLMF1 GLCTLVAML effector memory T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*02:01 B2M MHCI -3151 chip0420_384390 12.57 7.15 Chip1 T1D_2 T1D TGCGCCAGCAAGATGGGGGCCGGGGCTACGCAGTATTTT CASKMGAGATQYF TRBV10-2*01 TRBJ2-3*01 5.0 280.0 _CASKMGAGATQYF 1 2932 EBV-BLMF1 EBV 0.5 2531 NEG 132 2800 10 EBV BLMF1 GLCTLVAML effector memory T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*02:01 B2M MHCI -3152 chip0420_449863 10.72 11.28 Chip1 T1D_1 T1D TGTGCCAGCAGTTCCGGAGGGAACGTGGATACGCAGTATTTT CASSSGGNVDTQYF TRBV7-3*01 TRBJ2-3*01 16.0 592.0 _CASSSGGNVDTQYF 47 3540 EBV-BLMF1 EBV 0.57 2531 NEG 123 3417 9 EBV BLMF1 GLCTLVAML effector memory T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*02:01 B2M MHCI -3153 chip0420_520448 -2.36 12.79 Chip1 T1D_1 T1D TGTGCTGGCCCTCAAGGAAATCTCATCTTT CAGPQGNLIF TRAV35*01 TRAJ42*01 23.0 2089.0 CAGPQGNLIF_ 1 3671 CVB3-P3A CVB 0.92 77 NEG 117 3554 1 CoxsackievirusB P3A GIIYIIYKL Naive T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*02:01 B2M MHCI -3154 chip0420_178569 14.87 10.86 Chip1 T1D_2 T1D TGTGCTTCCCTAACCCCGGGGGCTTCCAAGATAATCTTT CASLTPGASKIIF TRAV8-6*01 TRAJ3*01 30.0 2173.0 TGTGCCAGCAGCTCGGGACTAGTCGCCCCCGGGGAGCTGTTTTTT CASSSGLVAPGELFF TRBV2*01 TRBJ2-2*01 70.0 3589.0 CASLTPGASKIIF_CASSSGLVAPGELFF 38 2691 EBV-BLMF1 EBV 0.6 2531 NEG 120 2571 12 EBV BLMF1 GLCTLVAML effector T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*02:01 B2M MHCI -3155 chip0420_870727 13.43 10.25 Chip1 T1D_1 T1D _ 6746 3018 EBV-BLMF1 EBV 0.62 2531 NEG 120 2898 12 EBV BLMF1 GLCTLVAML effector T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*02:01 B2M MHCI -3156 chip0420_862961 5.97 13.38 Chip1 T1D_1 T1D TGTGCCAGTAGTTCTGGGGCTTATGGCTACACCTTC CASSSGAYGYTF TRBV19*01 TRBJ1-2*01 16.0 1002.0 _CASSSGAYGYTF 6 3973 M1 FLU 0.64 1250 M1 140 3833 7 InfluenzaA M1 GILGFVFTL transitional T cells between effector and memory populations PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*02:01 B2M MHCI -3157 chip0420_179306 -3.94 10.17 Chip1 T1D_2 T1D TGTGCCAGCAGCTATAACGGGGCTGAAGCTTTCTTT CASSYNGAEAFF TRBV7-2*01 TRBJ1-1*01 60.0 2804.0 _CASSYNGAEAFF 1 4542 GAD65-114-122 GAD65 0.89 63 GAD65-114-122 115 4427 2 HomoSapiens GAD65 VMNILLQYV Naive T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*02:01 B2M MHCI -3158 chip0420_402974 12.54 7.15 Chip1 T1D_2 T1D TGCAGCGTGGGGACAGGGGGAACTAATGAAAAACTGTTTTTT CSVGTGGTNEKLFF TRBV29-1*01 TRBJ1-4*01 50.0 3163.0 _CSVGTGGTNEKLFF 638 2588 EBV-BLMF1 EBV 0.45 2531 NEG 162 2426 10 EBV BLMF1 GLCTLVAML effector memory T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*02:01 B2M MHCI -3159 chip0420_303998 9.61 8.72 Chip1 T1D_2 T1D TGCAGCGTGGGGACAGGGGGAACTAATGAAAAACTGTTTTTT CSVGTGGTNEKLFF TRBV29-1*01 TRBJ1-4*01 29.0 1433.0 _CSVGTGGTNEKLFF 638 3012 EBV-BLMF1 EBV 0.8 2531 NEG 114 2898 8 EBV BLMF1 GLCTLVAML effector memory T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*02:01 B2M MHCI -3160 chip0420_269788 13.89 10.64 Chip1 T1D_2 T1D TGTGCCAGCGGCACTCTAGCGGGGGCTGGGCAGACCCAGTACTTC CASGTLAGAGQTQYF TRBV3-1*01 TRBJ2-5*01 22.0 1618.0 _CASGTLAGAGQTQYF 5 2629 EBV-BRLF1 EBV 0.89 1264 NEG 122 2507 12 EBV BRLF1 YVLDHLIVV effector T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*02:01 B2M MHCI -3161 chip0420_697137 -3.13 11.55 Chip1 T1D_1 T1D _ 6746 4316 ZNT8-115-123 ZNT8 0.94 74 ZNT8-115-123 102 4214 1 HomoSapiens ZNT8 LLSLFSLWL Naive T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*02:01 B2M MHCI -3162 chip0420_521422 14.45 9.69 Chip1 T1D_2 T1D TGTGCCAGCAGCCTAGAGGCTTCCTACGAGCAGTACTTC CASSLEASYEQYF TRBV7-8*01 TRBJ2-7*01 15.0 902.0 _CASSLEASYEQYF 2 5838 MART1-A28L MART1 0.78 84 MART1-A28L 155 5683 12 HomoSapiens MART1 ALGIGILTV effector T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*02:01 B2M MHCI -3163 chip0420_334702 10.28 11.31 Chip1 T1D_1 T1D TGTGCCAGCAGCCCAGTTCGCGGGTCAGCCTACGAGCAGTACTTC CASSPVRGSAYEQYF TRBV3-1*01 TRBJ2-7*01 3.0 267.0 _CASSPVRGSAYEQYF 1 3456 EBV-BLMF1 EBV 0.78 2531 EBV-BLMF1 122 3334 9 EBV BLMF1 GLCTLVAML effector memory T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*02:01 B2M MHCI -3164 chip0420_269128 6.28 12.62 Chip1 T1D_1 T1D TGTGCCAGTAGTGTCAGGGCAGGAGAGACCCAGTACTTC CASSVRAGETQYF TRBV19*01 TRBJ2-5*01 13.0 788.0 _CASSVRAGETQYF 23 5959 M1 FLU 0.89 1250 M1 128 5831 7 InfluenzaA M1 GILGFVFTL transitional T cells between effector and memory populations PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*02:01 B2M MHCI -3165 chip0420_796371 11.64 7.25 Chip1 T1D_2 T1D _ 6746 4150 EBV-LMP2A EBV 1.0 700 NEG 135 4015 10 EBV LMP2A CLGGLLTMV effector memory T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*02:01 B2M MHCI -3166 chip0420_500660 -4.34 11.27 Chip1 T1D_1 T1D _ 6746 4855 PGT-178 PGT 0.57 1480 PGT-178 114 4741 1 HomoSapiens PGT LLAGIGTVPI Naive T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*02:01 B2M MHCI -3167 chip0420_656670 -3.29 13.41 Chip1 T1D_1 T1D TGTGCCAGCAACGCGTACGAGACTAGCGGGACCAATGAGCAGTTCTTC CASNAYETSGTNEQFF TRBV9*01 TRBJ2-1*01 31.0 1709.0 _CASNAYETSGTNEQFF 1 3746 ZNT8-115-123 ZNT8 0.67 74 ZNT8-115-123 120 3626 1 HomoSapiens ZNT8 LLSLFSLWL Naive T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*02:01 B2M MHCI -3168 chip0420_414347 11.69 7.71 Chip1 T1D_1 T1D TGTGCCAGCAGTCCGGACCAAACTAGCTCCTACAATGAGCAGTTCTTC CASSPDQTSSYNEQFF TRBV27*01 TRBJ2-1*01 26.0 1565.0 _CASSPDQTSSYNEQFF 47 3430 EBV-BRLF1 EBV 1.0 1264 EBV-BRLF1 147 3283 10 EBV BRLF1 YVLDHLIVV effector memory T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*02:01 B2M MHCI -3169 chip0420_263854 13.44 10.3 Chip1 T1D_1 T1D TGTGCCGTGAAGGACACCGACAAGCTCATCTTT CAVKDTDKLIF TRAV8-1*01 TRAJ34*01 1.0 25.0 TGTGCCAGCAGCCACTTATTAGGGACAGGTTTTGGCTACACCTTC CASSHLLGTGFGYTF TRBV3-1*01 TRBJ1-2*01 21.0 1256.0 CAVKDTDKLIF_CASSHLLGTGFGYTF 1 4604 EBV-BRLF1 EBV 0.76 1264 EBV-BRLF1 125 4479 9 EBV BRLF1 YVLDHLIVV effector memory T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*02:01 B2M MHCI -3170 chip0420_636828 9.03 9.1 Chip1 T1D_3 T1D _ 6746 5191 BZLF1-190-197 EBV 0.7 2156 BZLF1-190-197 111 5080 8 EBV BZLF1 RAKFKQLL effector memory T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-B*08:01 B2M MHCI -3171 chip0420_781462 5.08 10.46 Chip1 T1D_2 T1D TGTGCCACCAGTGAGACTAGCGGGAGCGATGAGCAGTTCTTC CATSETSGSDEQFF TRBV24-1*01 TRBJ2-1*01 2.0 42.0 _CATSETSGSDEQFF 1 6794 HCV-K1Y HCV 0.43 15 NEG 130 6664 6 HCV POL YLVALGINAV central memory T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*02:01 B2M MHCI -3172 chip0420_768163 0.31 8.6 Chip1 T1D_2 T1D TGTGCCAGCACGTCGGTGAACTATGGCTACACCTTC CASTSVNYGYTF TRBV2*01 TRBJ1-2*01 1.0 57.0 _CASTSVNYGYTF 1 5369 PGT-178 PGT 0.68 1480 PGT-178 141 5228 4 HomoSapiens PGT LLAGIGTVPI Naive T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*02:01 B2M MHCI -3173 chip0420_524848 -3.54 10.12 Chip1 T1D_1 T1D TGTGCCAGCAGCGCTAGCGGGGGGGCCGGAGATACGCAGTATTTT CASSASGGAGDTQYF TRBV7-8*01 TRBJ2-3*01 33.0 1852.0 _CASSASGGAGDTQYF 1 4542 PGT-178 PGT 0.4 1480 NEG 143 4399 4 HomoSapiens PGT LLAGIGTVPI Naive T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*02:01 B2M MHCI -3174 chip0420_834019 13.34 9.96 Chip1 T1D_1 T1D TGTGCCAGCAGCCCAGTTAGCGGGTCAACCTACGAGCAGTACTTC CASSPVSGSTYEQYF TRBV3-1*01 TRBJ2-7*01 41.0 2111.0 _CASSPVSGSTYEQYF 80 2446 EBV-BLMF1 EBV 0.64 2531 NEG 109 2337 10 EBV BLMF1 GLCTLVAML effector memory T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*02:01 B2M MHCI -3175 chip0420_734352 11.54 9.23 Chip1 T1D_2 T1D TGCGCCAGCAGAGCGGGAGCCGGGGATACGCAGTATTTT CASRAGAGDTQYF TRBV10-2*01 TRBJ2-3*01 16.0 648.0 _CASRAGAGDTQYF 59 2580 EBV-BLMF1 EBV 0.62 2531 NEG 142 2438 10 EBV BLMF1 GLCTLVAML effector memory T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*02:01 B2M MHCI -3176 chip0420_624306 12.65 10.85 Chip1 T1D_1 T1D TGTGCCAGCAGTTCGGGACAGGTACTTCCCAATGAGCAGTTCTTC CASSSGQVLPNEQFF TRBV2*01 TRBJ2-1*01 17.0 1317.0 _CASSSGQVLPNEQFF 61 3233 EBV-BLMF1 EBV 0.67 2531 NEG 121 3112 9 EBV BLMF1 GLCTLVAML effector memory T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*02:01 B2M MHCI -3177 chip0420_375485 11.3 11.05 Chip1 T1D_2 T1D TGTGTGGTGAACCCCTTTAGGATACAGCACCCTCACCTTT CVVNPFag??gaYSTLTF TRAV12-1*01 TRAJ11*01 1.0 135.0 TGTGCCAGCAGTTACATGTCCGGCGAAGCTTTCTTT CASSYMSGEAFF TRBV6-2*01,TRBV6-3*01 TRBJ1-1*01 11.0 948.0 CVVNPFag??gaYSTLTF_CASSYMSGEAFF 2 3170 EBV-BRLF1 EBV 1.0 1264 EBV-BRLF1 132 3038 9 EBV BRLF1 YVLDHLIVV effector memory T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*02:01 B2M MHCI -3178 chip0420_284540 15.52 11.44 Chip1 T1D_1 T1D TGTGCCACCCAACAGGGGAGGGACAGTCAGCCCCAGCATTTT CATQQGRDSQPQHF TRBV28*01 TRBJ1-5*01 3.0 136.0 _CATQQGRDSQPQHF 52 2279 EBV-BLMF1 EBV 0.6 2531 NEG 142 2137 12 EBV BLMF1 GLCTLVAML effector T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*02:01 B2M MHCI -3179 chip0420_277735 8.47 10.5 Chip1 T1D_2 T1D TGTGCCAGTAGTATGCTATTAGGGGGCAATCAGCCCCAGCATTTT CASSMLLGGNQPQHF TRBV19*01 TRBJ1-5*01 12.0 405.0 _CASSMLLGGNQPQHF 2 4900 EBV-BRLF1 EBV 0.93 1264 EBV-BRLF1 115 4785 8 EBV BRLF1 YVLDHLIVV effector memory T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*02:01 B2M MHCI -3180 chip0420_867557 10.18 11.49 Chip1 T1D_2 T1D _ 6746 2818 EBV-BRLF1 EBV 0.89 1264 EBV-BRLF1 102 2716 9 EBV BRLF1 YVLDHLIVV effector memory T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*02:01 B2M MHCI -3181 chip0420_487916 -4.0 11.93 Chip1 T1D_1 T1D _ 6746 3809 HCVNS4B-1807-1816 HCV 0.75 74 NEG 108 3701 1 HCV NS4B LLFNILGGWV Naive T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*02:01 B2M MHCI -3182 chip0420_436881 0.72 8.09 Chip1 T1D_1 T1D TGTGCTGTCAGATTTGAAGAAACCAGTGGCTCTAGGTTGACCTTT CAVRFEETSGSRLTF TRAV41*01 TRAJ10*01 36.0 2017.0 CAVRFEETSGSRLTF_ 1 7637 PGT-178 PGT 0.68 1480 PGT-178 144 7493 4 HomoSapiens PGT LLAGIGTVPI Naive T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*02:01 B2M MHCI -3183 chip0420_549960 14.5 9.94 Chip1 T1D_1 T1D TGTGCTGTGGGTGATTTGGGTTTTTCCTGCGCGTT CAVGDtt?GFFLRV TRAV8-4*01 TRAJ43*01 3.0 568.0 TGCAGCGTCGGCTCCAGGGGAACTAATGAAAAACTGTTTTTT CSVGSRGTNEKLFF TRBV29-1*01 TRBJ1-4*01 3.0 114.0 CAVGDtt?GFFLRV_CSVGSRGTNEKLFF 1 1826 EBV-BLMF1 EBV 0.8 2531 NEG 118 1708 12 EBV BLMF1 GLCTLVAML effector T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*02:01 B2M MHCI -3184 chip0420_142129 10.27 11.25 Chip1 T1D_2 T1D TGTGCAGCATACGCAGGCAACATGCTCACCTTT CAAYAGNMLTF TRAV29/DV5*01 TRAJ39*01 2.0 352.0 TGCGCCAGCAGGATGGGGGCCGGGGATACGCAGTATTTT CASRMGAGDTQYF TRBV10-2*01 TRBJ2-3*01 14.0 524.0 CAAYAGNMLTF_CASRMGAGDTQYF 21 2941 EBV-BLMF1 EBV 1.0 2531 NEG 132 2809 9 EBV BLMF1 GLCTLVAML effector memory T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*02:01 B2M MHCI -3185 chip0420_466700 15.01 12.95 Chip1 T1D_2 T1D TGCAGCGTGGGGACAGGGGGAACTAATGAAAAACTGTTTTTT CSVGTGGTNEKLFF TRBV29-1*01 TRBJ1-4*01 115.0 3919.0 _CSVGTGGTNEKLFF 638 1723 EBV-BLMF1 EBV 0.73 2531 NEG 140 1583 12 EBV BLMF1 GLCTLVAML effector T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*02:01 B2M MHCI -3186 chip0420_243318 -2.95 10.68 Chip1 T1D_2 T1D TATGCAATACGGGGGAACAACAGACTCGCTTTT YAIRGNNRLAF TRAV12-3*01 TRAJ7*01 24.0 2089.0 TGTGCTGTGCCGGACACAGGCTTTCAGAAACTTGTATTT CAVPDTGFQKLVF TRAV21*01 TRAJ8*01 21.0 1482.0 0.43 TGTGCCAGCAGATCTGACGGAAGCAATCAGCCCCAGCATTTT CASRSDGSNQPQHF TRBV12-3*01,TRBV12-4*01 TRBJ1-5*01 27.0 1004.0 YAIRGNNRLAF_CASRSDGSNQPQHF 1 4311 INSDRIP-1-9 INS 0.57 8 NEG 125 4186 4 HomoSapiens INSDRIP MLYQHLLPL Naive T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*02:01 B2M MHCI -3187 chip0420_567938 9.78 9.83 Chip1 T1D_1 T1D _ 6746 3208 EBV-BLMF1 EBV 0.78 2531 NEG 134 3074 8 EBV BLMF1 GLCTLVAML effector memory T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*02:01 B2M MHCI -3188 chip0420_710029 14.33 11.88 Chip1 T1D_1 T1D _ 6746 2051 EBV-BRLF1 EBV 0.88 1264 EBV-BRLF1 119 1932 12 EBV BRLF1 YVLDHLIVV effector T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*02:01 B2M MHCI -3189 chip0420_625463 10.96 12.27 Chip1 T1D_1 T1D TGTGCCAGCAGTTCGGGACAGGTACTTCCCAATGAGCAGTTCTTC CASSSGQVLPNEQFF TRBV2*01 TRBJ2-1*01 26.0 1929.0 _CASSSGQVLPNEQFF 61 3781 EBV-BLMF1 EBV 0.83 2531 NEG 110 3671 11 EBV BLMF1 GLCTLVAML effector T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*02:01 B2M MHCI -3190 chip0420_472941 7.08 13.16 Chip1 T1D_1 T1D _ 6746 5491 M1 FLU 0.88 1250 M1 125 5366 7 InfluenzaA M1 GILGFVFTL transitional T cells between effector and memory populations PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*02:01 B2M MHCI -3191 chip0420_5949 8.5 13.93 Chip1 T1D_1 T1D TGTGCTGTGAGTGATCGGGATGGCGGCTTCAAAACTATCTTT CAVSDRDGGFKTIF TRAV8-4*01 TRAJ9*01 45.0 2149.0 TGTGCCAGTAGTATAAATGGGGGCCGGAGGGATGGCTACACCTTC CASSINGGRRDGYTF TRBV19*01 TRBJ1-2*01 6.0 204.0 CAVSDRDGGFKTIF_CASSINGGRRDGYTF 5 2499 M1 FLU 0.67 1250 M1 113 2386 11 InfluenzaA M1 GILGFVFTL effector T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*02:01 B2M MHCI -3192 chip0420_709025 7.72 12.84 Chip1 healthy_1 healthy TGCAGTGCTTCTCGAGCTCTTGATCAGCCCCAGCATTTT CSASRALDQPQHF TRBV20-1*01 TRBJ1-5*01 1.0 60.0 _CSASRALDQPQHF 2 2948 EBV-BRLF1 EBV 0.96 1264 EBV-BRLF1 120 2828 7 EBV BRLF1 YVLDHLIVV transitional T cells between effector and memory populations PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*02:01 B2M MHCI -3193 chip0420_51669 6.25 10.38 Chip1 T1D_1 T1D _ 6746 4194 EBV-LMP2-FLY EBV 0.96 355 EBV-LMP2-FLY 146 4048 6 EBV LMP2 FLYALALLL central memory T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*02:01 B2M MHCI -3194 chip0420_583841 12.5 10.96 Chip1 T1D_1 T1D TGTGCCACCCAACAGGGGAGGGACAGTCAGCCCCAGCATTTT CATQQGRDSQPQHF TRBV28*01 TRBJ1-5*01 51.0 2985.0 _CATQQGRDSQPQHF 52 2685 EBV-BLMF1 EBV 0.62 2531 NEG 131 2554 9 EBV BLMF1 GLCTLVAML effector memory T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*02:01 B2M MHCI -3195 chip0420_582195 13.47 10.0 Chip1 T1D_1 T1D TGTGCTGACTTAGAATGCTGGCAACCACCGTAAGCTGATTTGG CADLECW??cNHRKLIW TRAV36/DV7*01 TRAJ38*01 75.0 2699.0 CADLECW??cNHRKLIW_ 3 2532 EBV-BLMF1 EBV 0.75 2531 NEG 113 2419 10 EBV BLMF1 GLCTLVAML effector memory T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*02:01 B2M MHCI -3196 chip0420_880311 14.52 11.54 Chip1 T1D_1 T1D TGTGCTCCCTATAACACCGACAAGCTCATCTTT CAPYNTDKLIF TRAV9-2*01 TRAJ34*01 24.0 2083.0 TGTGCCAGCAGCCCAGTTAGCGGGTCAACCTACGAGCAGTACTTC CASSPVSGSTYEQYF TRBV3-1*01 TRBJ2-7*01 62.0 2934.0 CAPYNTDKLIF_CASSPVSGSTYEQYF 1 2945 EBV-BLMF1 EBV 0.75 2531 NEG 115 2830 12 EBV BLMF1 GLCTLVAML effector T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*02:01 B2M MHCI -3197 chip0420_526406 13.61 10.93 Chip1 T1D_1 T1D _ 6746 3093 EBV-BLMF1 EBV 0.62 2531 NEG 124 2969 9 EBV BLMF1 GLCTLVAML effector memory T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*02:01 B2M MHCI -3198 chip0420_45687 11.93 6.72 Chip1 T1D_2 T1D TGTGCAGCATACGCAGGCAACATGCTCACCTTT CAAYAGNMLTF TRAV29/DV5*01 TRAJ39*01 1.0 45.0 CAAYAGNMLTF_ 8 3901 EBV-BLMF1 EBV 0.83 2531 NEG 129 3772 10 EBV BLMF1 GLCTLVAML effector memory T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*02:01 B2M MHCI -3199 chip0420_677202 12.85 8.31 Chip1 T1D_1 T1D _ 6746 1878 EBV-BLMF1 EBV 0.83 2531 NEG 139 1739 10 EBV BLMF1 GLCTLVAML effector memory T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*02:01 B2M MHCI -3200 chip0420_525789 11.42 8.44 Chip1 T1D_2 T1D TGCAGCGTGGGGACAGGGGGAACTAATGAAAAACTGTTTTTT CSVGTGGTNEKLFF TRBV29-1*01 TRBJ1-4*01 34.0 1521.0 _CSVGTGGTNEKLFF 638 3670 EBV-BLMF1 EBV 0.6 2531 NEG 128 3542 10 EBV BLMF1 GLCTLVAML effector memory T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*02:01 B2M MHCI -3201 chip0420_422237 11.95 10.14 Chip1 T1D_1 T1D TGCGGCACAGAGGAACCTAACGACTACAAGCTCAGCTTT CGTEEPNDYKLSF TRAV30*01 TRAJ20*01 35.0 2334.0 TGTGCCAGCAGCACGGGACAGCTATCGAACACCGGGGAGCTGTTTTTT CASSTGQLSNTGELFF TRBV9*01 TRBJ2-2*01 25.0 1419.0 CGTEEPNDYKLSF_CASSTGQLSNTGELFF 18 2744 EBV-BLMF1 EBV 0.93 2531 NEG 127 2617 9 EBV BLMF1 GLCTLVAML effector memory T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*02:01 B2M MHCI -3202 chip0420_88653 11.28 10.86 Chip1 T1D_1 T1D _ 6746 2704 EBV-BLMF1 EBV 0.92 2531 NEG 109 2595 9 EBV BLMF1 GLCTLVAML effector memory T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*02:01 B2M MHCI -3203 chip0420_628272 11.09 10.25 Chip1 T1D_2 T1D TGTGCCAGCAGCTCGGGACTAGTCGCCCCCGGGGAGCTGTTTTTT CASSSGLVAPGELFF TRBV2*01 TRBJ2-2*01 21.0 1061.0 _CASSSGLVAPGELFF 133 3458 EBV-BLMF1 EBV 0.6 2531 NEG 129 3329 9 EBV BLMF1 GLCTLVAML effector memory T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*02:01 B2M MHCI -3204 chip0420_207810 6.77 12.96 Chip1 T1D_2 T1D _ 6746 2828 M1 FLU 0.8 1250 M1 165 2663 7 InfluenzaA M1 GILGFVFTL transitional T cells between effector and memory populations PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*02:01 B2M MHCI -3205 chip0420_159819 -3.15 14.34 Chip1 T1D_2 T1D TGTGCCGTGGAAGGAGCCAATAGTACGCTGACATTT CAVEGANSTLTF TRAV12-2*01 TRAJ56*01 25.0 2054.0 TGTGCCAGCAGTTTATCGATTATTACAGAGGATGGCTACACCTTC CASSLSIITEDGYTF TRBV27*01 TRBJ1-2*01 42.0 1834.0 CAVEGANSTLTF_CASSLSIITEDGYTF 1 2116 PGT-178 PGT 0.62 1480 PGT-178 115 2001 1 HomoSapiens PGT LLAGIGTVPI Naive T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*02:01 B2M MHCI -3206 chip0420_688183 -4.52 9.48 Chip1 healthy_1 healthy TGTGCCAGCAGTTACTCGACACCAGGAGGTGAAAAACTGTTTTTT CASSYSTPGGEKLFF TRBV6-5*01 TRBJ1-4*01 38.0 1076.0 _CASSYSTPGGEKLFF 1 5535 PGT-178 PGT 0.73 1480 NEG 118 5417 2 HomoSapiens PGT LLAGIGTVPI Naive T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*02:01 B2M MHCI -3207 chip0420_486075 11.05 10.17 Chip1 T1D_1 T1D TGCAGCACCCAAGAGGGGGGGTATGGCTACACCTTC CSTQEGGYGYTF TRBV29-1*01 TRBJ1-2*01 68.0 4513.0 _CSTQEGGYGYTF 4 3707 EBV-BLMF1 EBV 0.83 2531 NEG 128 3579 9 EBV BLMF1 GLCTLVAML effector memory T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*02:01 B2M MHCI -3208 chip0420_275802 9.1 8.62 Chip1 T1D_1 T1D _ 6746 5477 EBV-BRLF1 EBV 0.87 1264 EBV-BRLF1 158 5319 8 EBV BRLF1 YVLDHLIVV effector memory T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*02:01 B2M MHCI -3209 chip0420_721609 -2.82 14.59 Chip1 T1D_1 T1D _ 6746 3597 PGT-178 PGT 0.7 1480 PGT-178 125 3472 1 HomoSapiens PGT LLAGIGTVPI Naive T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*02:01 B2M MHCI -3210 chip0420_850539 14.76 8.71 Chip1 T1D_2 T1D TGCAGCGTGGGGACAGGGGGAACTAATGAAAAACTGTTTTTT CSVGTGGTNEKLFF TRBV29-1*01 TRBJ1-4*01 142.0 6690.0 _CSVGTGGTNEKLFF 638 1929 EBV-BLMF1 EBV 0.57 2531 NEG 139 1790 12 EBV BLMF1 GLCTLVAML effector T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*02:01 B2M MHCI -3211 chip0420_571882 5.74 8.73 Chip1 T1D_2 T1D _ 6746 4967 EBV-LMP2-FLY EBV 1.0 355 NEG 139 4828 6 EBV LMP2 FLYALALLL central memory T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*02:01 B2M MHCI -3212 chip0420_424043 13.52 13.14 Chip1 T1D_1 T1D TGCAGTGCTGCCGACCAAACCTACAATGAGCAGTTCTTC CSAADQTYNEQFF TRBV20-1*01 TRBJ2-1*01 1.0 47.0 _CSAADQTYNEQFF 5 1992 EBV-BRLF1 EBV 1.0 1264 EBV-BRLF1 122 1870 12 EBV BRLF1 YVLDHLIVV effector T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*02:01 B2M MHCI -3213 chip0420_516419 15.69 12.16 Chip1 T1D_2 T1D TGCAGCGTGGGGACAGGGGGAACTAATGAAAAACTGTTTTTT CSVGTGGTNEKLFF TRBV29-1*01 TRBJ1-4*01 38.0 1237.0 _CSVGTGGTNEKLFF 638 2055 EBV-BLMF1 EBV 0.5 2531 NEG 140 1915 12 EBV BLMF1 GLCTLVAML effector T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*02:01 B2M MHCI -3214 chip0420_235010 9.79 9.61 Chip1 T1D_1 T1D TGTGTGGTGAACGGACGGGATAGCAGCTATAAATTGATCTTC CVVNGRDSSYKLIF TRAV12-1*01 TRAJ12*01 13.0 498.0 TGTGCCAGCAGTGACGGTCGGGTCCACCCGGGGACCCAGTACTTC CASSDGRVHPGTQYF TRBV2*01 TRBJ2-5*01 19.0 1164.0 CVVNGRDSSYKLIF_CASSDGRVHPGTQYF 14 4576 EBV-BLMF1 EBV 0.57 2531 NEG 126 4450 8 EBV BLMF1 GLCTLVAML effector memory T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*02:01 B2M MHCI -3215 chip0420_761593 12.83 6.8 Chip1 T1D_1 T1D TGCAGCGTCGGCTCCAGGGGAACTAATGAAAAACTGTTTTTT CSVGSRGTNEKLFF TRBV29-1*01 TRBJ1-4*01 80.0 4452.0 _CSVGSRGTNEKLFF 283 2479 EBV-BLMF1 EBV 0.5 2531 NEG 142 2337 10 EBV BLMF1 GLCTLVAML effector memory T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*02:01 B2M MHCI -3216 chip0420_404553 11.81 7.06 Chip1 T1D_2 T1D TGTGTGGCGAACGGCAGGGATAGCAGCTATAAATTGATCTTC CVANGRDSSYKLIF TRAV12-1*01 TRAJ12*01 32.0 2096.0 TGTGCCAGCAGCTCGGGACTAGTCGCCCCCGGGGAGCTGTTTTTT CASSSGLVAPGELFF TRBV2*01 TRBJ2-2*01 56.0 4018.0 CVANGRDSSYKLIF_CASSSGLVAPGELFF 3 3173 EBV-BLMF1 EBV 0.44 2531 NEG 154 3019 10 EBV BLMF1 GLCTLVAML effector memory T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*02:01 B2M MHCI -3217 chip0420_484273 5.95 13.09 Chip1 T1D_1 T1D _ 6746 4215 M1 FLU 0.88 1250 NEG 115 4100 7 InfluenzaA M1 GILGFVFTL transitional T cells between effector and memory populations PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*02:01 B2M MHCI -3218 chip0420_357342 8.82 11.82 Chip1 T1D_1 T1D TGTGCCTCACGCCGGGCCGGCACTGAAGCTTTCTTT CASRRAGTEAFF TRAV41*01,TRAV27*01 TRAJ40*01 2.0 7.0 TGTGCCTCCCGCCGGGACGGCACTGAAGCTTTCTTT CASRRDGTEAFF TRBV30*01 TRBJ1-1*01 59.0 3401.0 CASRRAGTEAFF_CASRRDGTEAFF 1 3478 CVB3-P3A CVB 0.82 77 NEG 115 3363 7 CoxsackievirusB P3A GIIYIIYKL transitional T cells between effector and memory populations PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*02:01 B2M MHCI -3219 chip0420_805069 9.93 10.58 Chip1 T1D_2 T1D _ 6746 3219 EBV-BRLF1 EBV 0.94 1264 EBV-BRLF1 110 3109 9 EBV BRLF1 YVLDHLIVV effector memory T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*02:01 B2M MHCI -3220 chip0420_391548 8.43 10.65 Chip1 T1D_2 T1D TGTGCCAGCAGTTTCCTTCGCGGGAGCGGGCATGAGCAGTTCTTC CASSFLRGSGHEQFF TRBV28*01 TRBJ2-1*01 23.0 1336.0 _CASSFLRGSGHEQFF 1 3240 EBV-BRLF1 EBV 0.86 1264 NEG 122 3118 8 EBV BRLF1 YVLDHLIVV effector memory T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*02:01 B2M MHCI -3221 chip0420_850334 -1.95 12.23 Chip1 T1D_1 T1D _ 6746 5067 ROTA-VP2-1 ROTA 0.71 17 ROTA-VP2-1 133 4934 4 RotavirusA VP2 SLISGMWLL Naive T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*02:01 B2M MHCI -3222 chip0420_306661 11.92 8.83 Chip1 T1D_2 T1D _ 6746 2211 EBV-BRLF1 EBV 0.6 1264 NEG 131 2080 10 EBV BRLF1 YVLDHLIVV effector memory T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*02:01 B2M MHCI -3223 chip0420_467146 11.0 7.95 Chip1 T1D_1 T1D _ 6746 4556 EBV-LMP2-FLY EBV 0.82 355 NEG 130 4426 6 EBV LMP2 FLYALALLL central memory T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*02:01 B2M MHCI -3224 chip0420_364492 12.59 9.88 Chip1 T1D_2 T1D TGTGCCAGCAGCTCGGGACTAGTCGCCCCCGGGGAGCTGTTTTTT CASSSGLVAPGELFF TRBV2*01 TRBJ2-2*01 7.0 366.0 _CASSSGLVAPGELFF 133 3778 EBV-BLMF1 EBV 0.45 2531 NEG 137 3641 9 EBV BLMF1 GLCTLVAML effector memory T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*02:01 B2M MHCI -3225 chip0420_266042 -2.84 13.89 Chip1 T1D_1 T1D TGTGCCGTGAACGACATGCGCTTT CAVNDMRF TRAV12-2*01 TRAJ43*01 1.0 11.0 CAVNDMRF_ 1 2351 PGT-178 PGT 0.46 1480 PGT-178 100 2251 1 HomoSapiens PGT LLAGIGTVPI Naive T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*02:01 B2M MHCI -3226 chip0420_693157 15.66 10.14 Chip1 T1D_2 T1D TGTGCTTCCCTAACCCCGGGGGCTTCCAAGATAATCTTT CASLTPGASKIIF TRAV8-6*01 TRAJ3*01 21.0 2052.0 TGTGCCAGCAGCTCGGGACTAGTCGCCCCCGGGGAGCTGTTTTTT CASSSGLVAPGELFF TRBV2*01 TRBJ2-2*01 22.0 1489.0 CASLTPGASKIIF_CASSSGLVAPGELFF 38 2632 EBV-BLMF1 EBV 0.43 2531 NEG 145 2487 12 EBV BLMF1 GLCTLVAML effector T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*02:01 B2M MHCI -3227 chip0420_280579 0.28 8.47 Chip1 T1D_1 T1D TGTGCAATGAGCCGACCTCACTTTGGCCATGCGAACTTCCCCTTT CAMSRPHFGHANFPF TRAV12-3*01 TRAJ48*01 7.0 215.0 TGTGCCAGCAGTAAGAGTGGCAGAGATGGAAGCACAGATACGCAGTATTTT CASSKSGRDGSTDTQYF TRBV28*01 TRBJ2-3*01 31.0 1432.0 CAMSRPHFGHANFPF_CASSKSGRDGSTDTQYF 1 6094 PGT-178 PGT 0.59 1480 PGT-178 126 5968 4 HomoSapiens PGT LLAGIGTVPI Naive T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*02:01 B2M MHCI -3228 chip0420_507126 -3.41 10.33 Chip1 T1D_1 T1D TGTGCAATGAGCCGTTCTAACTTTGGAAATGAGAAATTAACCTTT CAMSRSNFGNEKLTF TRAV12-3*01 TRAJ48*01 51.0 2043.0 TGCAGTGCCCAAGACCCGGGACAGGGGATGTCGGCCCAGCATTTT CSAQDPGQGMSAQHF TRBV20-1*01 TRBJ1-5*01 2.0 6.0 CAMSRSNFGNEKLTF_CSAQDPGQGMSAQHF 1 4417 PGT-178 PGT 0.84 1480 PGT-178 131 4286 2 HomoSapiens PGT LLAGIGTVPI Naive T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*02:01 B2M MHCI -3229 chip0420_223808 0.32 4.6 Chip1 healthy_1 healthy TGTGCCAGCAGACATCGCCAGGGGGGGAACACTGAAGCTTTCTTT CASRHRQGGNTEAFF TRBV28*01 TRBJ1-1*01 9.0 371.0 _CASRHRQGGNTEAFF 1 6110 HCVNS3-1406-1415 HCV 0.43 12 NEG 115 5995 5 HCV NS3 KLVALGINAV natural killer-like T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*02:01 B2M MHCI -3230 chip0420_121365 9.69 9.73 Chip1 T1D_1 T1D TGCAGCGTCGGCTCCAGGGGAACTAATGAAAAACTGTTTTTT CSVGSRGTNEKLFF TRBV29-1*01 TRBJ1-4*01 53.0 2267.0 _CSVGSRGTNEKLFF 283 3944 EBV-BLMF1 EBV 0.5 2531 NEG 136 3808 8 EBV BLMF1 GLCTLVAML effector memory T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*02:01 B2M MHCI -3231 chip0420_657899 5.64 12.93 Chip1 T1D_1 T1D TGTGCAATGAGAGAGGGCGTCGTGGAATATGGAAACAAACTGGTCTTT CAMREGVVEYGNKLVF TRAV14/DV4*01 TRAJ47*01 82.0 2052.0 TGTGCCAGTAGTTTTGGAGCCGGGGAGCTGTTTTTT CASSFGAGELFF TRBV19*01 TRBJ2-2*01 18.0 1352.0 CAMREGVVEYGNKLVF_CASSFGAGELFF 3 5185 M1 FLU 0.71 1250 M1 139 5046 7 InfluenzaA M1 GILGFVFTL transitional T cells between effector and memory populations PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*02:01 B2M MHCI -3232 chip0420_136621 9.97 10.48 Chip1 T1D_1 T1D TGTGCCAGCAGTTTAGACGTGGCGGCACACTACAATGAGCAGTTCTTC CASSLDVAAHYNEQFF TRBV27*01 TRBJ2-1*01 1.0 54.0 _CASSLDVAAHYNEQFF 1 2860 EBV-BRLF1 EBV 0.8 1264 NEG 123 2737 9 EBV BRLF1 YVLDHLIVV effector memory T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*02:01 B2M MHCI -3233 chip0420_576243 12.42 11.35 Chip1 T1D_2 T1D _ 6746 2160 EBV-BRLF1 EBV 0.86 1264 EBV-BRLF1 114 2046 9 EBV BRLF1 YVLDHLIVV effector memory T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*02:01 B2M MHCI -3234 chip0420_439456 -2.22 10.69 Chip1 T1D_2 T1D TGTGCCGGAAGGGGCGACAAGCCCATCTTT CAGRGDKPIF TRAV27*01 TRAJ34*01 2.0 73.0 TGTGCCAGCAGCTCGGGCGGGACAGGCCTCTACGAGCAGTACTTC CASSSGGTGLYEQYF TRBV3-1*01 TRBJ2-7*01 57.0 3166.0 CAGRGDKPIF_CASSSGGTGLYEQYF 1 4048 PGT-178 PGT 0.84 1480 PGT-178 120 3928 3 HomoSapiens PGT LLAGIGTVPI Naive T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*02:01 B2M MHCI -3235 chip0420_570673 7.92 13.82 Chip1 T1D_1 T1D _ 6746 2550 M1 FLU 0.79 1250 M1 118 2432 7 InfluenzaA M1 GILGFVFTL transitional T cells between effector and memory populations PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*02:01 B2M MHCI -3236 chip0420_383697 11.72 7.81 Chip1 T1D_2 T1D _ 6746 3063 EBV-BLMF1 EBV 1.0 2531 NEG 129 2934 10 EBV BLMF1 GLCTLVAML effector memory T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*02:01 B2M MHCI -3237 chip0420_867031 -2.61 9.74 Chip1 T1D_2 T1D TGTGCAATGAGTATATCTAACTTTGGAAATGAGAAATTAACCTTT CAMSISNFGNEKLTF TRAV12-3*01 TRAJ48*01 121.0 3946.0 TGCAGTGCTACCACGACGGGAACTAGCAATCAGCCCCAGCATTTT CSATTTGTSNQPQHF TRBV20-1*01 TRBJ1-5*01 33.0 1783.0 CAMSISNFGNEKLTF_CSATTTGTSNQPQHF 1 4316 PGT-178 PGT 0.84 1480 PGT-178 121 4195 3 HomoSapiens PGT LLAGIGTVPI Naive T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*02:01 B2M MHCI -3238 chip0420_485110 5.3 10.91 Chip1 T1D_1 T1D TGTGCTCCGGAGGGCGCTTCAGGATACAGCACCCTCACCTTT CAPEGASGYSTLTF TRAV17*01 TRAJ11*01 30.0 1392.0 CAPEGASGYSTLTF_ 2 5399 EBV-LMP2-FLY EBV 0.88 355 EBV-LMP2-FLY 111 5288 6 EBV LMP2 FLYALALLL central memory T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*02:01 B2M MHCI -3239 chip0420_247312 12.45 8.97 Chip1 T1D_2 T1D TGTGCCAGCAGCCCCTCGACTAGCGGGAGTGGGGAGACCCAGTACTTC CASSPSTSGSGETQYF TRBV3-1*01 TRBJ2-5*01 6.0 414.0 _CASSPSTSGSGETQYF 18 1918 EBV-BRLF1 EBV 0.92 1264 NEG 144 1774 10 EBV BRLF1 YVLDHLIVV effector memory T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*02:01 B2M MHCI -3240 chip0420_794425 12.27 7.92 Chip1 T1D_2 T1D TGCAGCGTTGACCAAAGGACAGGGCAAAAGAAGAACTATGGCTACACCTTC CSVDQRTGQKKNYGYTF TRBV29-1*01 TRBJ1-2*01 70.0 2607.0 _CSVDQRTGQKKNYGYTF 40 2662 EBV-BLMF1 EBV 0.6 2531 NEG 132 2530 10 EBV BLMF1 GLCTLVAML effector memory T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*02:01 B2M MHCI -3241 chip0420_462009 7.16 13.77 Chip1 T1D_1 T1D _ 6746 3180 M1 FLU 0.96 1250 M1 136 3044 7 InfluenzaA M1 GILGFVFTL transitional T cells between effector and memory populations PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*02:01 B2M MHCI -3242 chip0420_181066 11.44 7.12 Chip1 healthy_1 healthy TGTGCCAGCAGTCCCCAGGGGGGCAACTATGGCTACACCTTC CASSPQGGNYGYTF TRBV6-1*01 TRBJ1-2*01 26.0 1680.0 _CASSPQGGNYGYTF 4 4725 EBV-LMP2-FLY EBV 0.87 355 NEG 118 4607 6 EBV LMP2 FLYALALLL central memory T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*02:01 B2M MHCI -3243 chip0420_81453 10.75 10.58 Chip1 T1D_2 T1D TGTGCCAGCAGCTCGGGACTAGTCGCCCCCGGGGAGCTGTTTTTT CASSSGLVAPGELFF TRBV2*01 TRBJ2-2*01 56.0 3721.0 _CASSSGLVAPGELFF 133 3357 EBV-BLMF1 EBV 0.73 2531 NEG 114 3243 9 EBV BLMF1 GLCTLVAML effector memory T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*02:01 B2M MHCI -3244 chip0420_502530 9.42 7.67 Chip1 T1D_2 T1D TGTGCCGTGAAGGACACCGACAAGCTCATCTTT CAVKDTDKLIF TRAV8-1*01 TRAJ34*01 6.0 389.0 CAVKDTDKLIF_ 56 4277 EBV-BRLF1 EBV 0.97 1264 EBV-BRLF1 137 4140 8 EBV BRLF1 YVLDHLIVV effector memory T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*02:01 B2M MHCI -3245 chip0420_130128 6.88 12.73 Chip1 healthy_1 healthy _ 6746 3474 M1 FLU 0.89 1250 M1 127 3347 7 InfluenzaA M1 GILGFVFTL transitional T cells between effector and memory populations PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*02:01 B2M MHCI -3246 chip0420_869484 9.45 10.9 Chip1 T1D_1 T1D TGTGCCAGCGTTTTTCTCGGGACAGGTCTCAACGAGCAGTACTTC CASVFLGTGLNEQYF TRBV28*01 TRBJ2-7*01 1.0 155.0 _CASVFLGTGLNEQYF 1 3790 EBV-BLMF1 EBV 0.86 2531 NEG 118 3672 9 EBV BLMF1 GLCTLVAML effector memory T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*02:01 B2M MHCI -3247 chip0420_719681 6.2 12.99 Chip1 T1D_1 T1D _ 6746 4080 M1 FLU 0.97 1250 M1 125 3955 7 InfluenzaA M1 GILGFVFTL transitional T cells between effector and memory populations PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*02:01 B2M MHCI -3248 chip0420_535282 10.28 10.51 Chip1 T1D_1 T1D TGCGCCAGCAGAGCGGGCGCCGGGGATACGCAGTATTTT CASRAGAGDTQYF TRBV10-2*01 TRBJ2-3*01 1.0 48.0 _CASRAGAGDTQYF 59 3446 EBV-BLMF1 EBV 1.0 2531 NEG 125 3321 9 EBV BLMF1 GLCTLVAML effector memory T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*02:01 B2M MHCI -3249 chip0420_562941 -1.03 10.88 Chip1 T1D_1 T1D TGTGCCAGTAGTACCCCGGACAGGGCTGATCCTAACTATGGCTACACCTTC CASSTPDRADPNYGYTF TRBV19*01 TRBJ1-2*01 78.0 3641.0 _CASSTPDRADPNYGYTF 1 4326 M1 FLU 1.0 1250 NEG 122 4204 3 InfluenzaA M1 GILGFVFTL Naive T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*02:01 B2M MHCI -3250 chip0420_332059 14.43 11.48 Chip1 T1D_2 T1D TGTGCCGCCCCAACTGGGGCAAACAACCTCTTCTTT CAAPTGANNLFF TRAV12-2*01 TRAJ36*01 24.0 2036.0 CAAPTGANNLFF_ 4 2051 PGT-178 PGT 0.67 1480 NEG 129 1922 12 HomoSapiens PGT LLAGIGTVPI effector T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*02:01 B2M MHCI -3251 chip0420_869128 10.96 8.46 Chip1 T1D_1 T1D TGCCTCCTATTTCTGCTGGTGGTACTAGCTATGGAAAGCTGACATTT CLLFLLVgt?TSYGKLTF TRAV26-2*01 TRAJ52*01 18.0 746.0 TGTGCCAGCAGTTCCGGAGGGAACGTGGATACGCAGTATTTT CASSSGGNVDTQYF TRBV7-3*01 TRBJ2-3*01 51.0 2383.0 CLLFLLVgt?TSYGKLTF_CASSSGGNVDTQYF 1 2481 EBV-BLMF1 EBV 0.67 2531 NEG 143 2338 10 EBV BLMF1 GLCTLVAML effector memory T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*02:01 B2M MHCI -3252 chip0420_534213 6.49 11.22 Chip1 T1D_1 T1D _ 6746 4171 EBV-LMP2-FLY EBV 0.95 355 EBV-LMP2-FLY 152 4019 7 EBV LMP2 FLYALALLL transitional T cells between effector and memory populations PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*02:01 B2M MHCI -3253 chip0420_21580 11.16 12.37 Chip1 T1D_1 T1D TGTGCCAGCAGCCCAGTTAGCGGGTCAACCTACGAGCAGTACTTC CASSPVSGSTYEQYF TRBV3-1*01 TRBJ2-7*01 30.0 1964.0 _CASSPVSGSTYEQYF 80 3432 EBV-BLMF1 EBV 0.92 2531 NEG 113 3319 11 EBV BLMF1 GLCTLVAML effector T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*02:01 B2M MHCI -3254 chip0420_334391 13.05 6.63 Chip1 T1D_1 T1D TGTGCCAGCAGTTCCGGAGGGAACGTGGATACGCAGTATTTT CASSSGGNVDTQYF TRBV7-3*01 TRBJ2-3*01 96.0 4569.0 _CASSSGGNVDTQYF 47 5099 EBV-BLMF1 EBV 0.8 2531 NEG 150 4949 10 EBV BLMF1 GLCTLVAML effector memory T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*02:01 B2M MHCI -3255 chip0420_147338 13.13 7.99 Chip1 T1D_1 T1D TGTGCCGTGAATGATGGGGGCTTTCAGAAACTTGTATTT CAVNDGGFQKLVF TRAV8-1*01 TRAJ8*01 4.0 194.0 TGTGCCAGCAGGGGCCTGACAGGGGGCGGGAGTGAAGCTTTCTTT CASRGLTGGGSEAFF TRBV28*01 TRBJ1-1*01 31.0 1293.0 CAVNDGGFQKLVF_CASRGLTGGGSEAFF 1 2521 EBV-BRLF1 EBV 0.94 1264 EBV-BRLF1 137 2384 10 EBV BRLF1 YVLDHLIVV effector memory T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*02:01 B2M MHCI -3256 chip0420_567954 5.24 9.61 Chip1 T1D_2 T1D TGTGCTATGGAAGGGAATTCAGGATACAGCACCCTCACCTTT CAMEGNSGYSTLTF TRAV17*01 TRAJ11*01 47.0 2349.0 CAMEGNSGYSTLTF_ 1 4214 EBV-LMP2-FLY EBV 0.62 355 NEG 121 4093 6 EBV LMP2 FLYALALLL central memory T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*02:01 B2M MHCI -3257 chip0420_186390 6.35 13.42 Chip1 T1D_1 T1D TGTGCCAGTAGTGGACGGAGCACAGATACGCAGTATTTT CASSGRSTDTQYF TRBV19*01 TRBJ2-3*01 17.0 1211.0 _CASSGRSTDTQYF 5 4368 M1 FLU 1.0 1250 M1 118 4250 7 InfluenzaA M1 GILGFVFTL transitional T cells between effector and memory populations PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*02:01 B2M MHCI -3258 chip0420_179871 -0.87 7.76 Chip1 T1D_1 T1D TGTGCAATGAGCTTATCTAACTTTGGAAATGAGAAATTAACCTTT CAMSLSNFGNEKLTF TRAV12-3*01 TRAJ48*01 61.0 3688.0 TGCAGTGCTAGAGTGCGGGACAGGGTCAATGAGCAGTTCTTC CSARVRDRVNEQFF TRBV20-1*01 TRBJ2-1*01 7.0 392.0 CAMSLSNFGNEKLTF_CSARVRDRVNEQFF 1 6620 PGT-178 PGT 0.96 1480 PGT-178 114 6506 3 HomoSapiens PGT LLAGIGTVPI Naive T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*02:01 B2M MHCI -3259 chip0420_136146 -3.51 13.14 Chip1 T1D_1 T1D TGTGCCAGCAGCAACCACAAAAAGGGTCATATCGATGAGCAGTTCTTC CASSNHKKGHIDEQFF TRBV6-1*01 TRBJ2-1*01 7.0 173.0 _CASSNHKKGHIDEQFF 1 4072 PGT-178 PGT 0.66 1480 PGT-178 108 3964 1 HomoSapiens PGT LLAGIGTVPI Naive T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*02:01 B2M MHCI -3260 chip0420_588684 7.29 13.94 Chip1 T1D_1 T1D CTGTGCCAGTAGTTTTGGAGCCGGGGCGCTGTTCTTT LCQ*FW??aAGALFF TRBV19*01 TRBJ2-2*01 8.0 954.0 _LCQ*FW??aAGALFF 1 3579 M1 FLU 0.72 1250 NEG 111 3468 7 InfluenzaA M1 GILGFVFTL transitional T cells between effector and memory populations PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*02:01 B2M MHCI -3261 chip0420_538293 12.7 11.17 Chip1 T1D_2 T1D _ 6746 2530 EBV-BLMF1 EBV 0.6 2531 NEG 117 2413 9 EBV BLMF1 GLCTLVAML effector memory T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*02:01 B2M MHCI -3262 chip0420_11697 10.82 10.21 Chip1 T1D_1 T1D TGTGCCAGCAGCACGGGACAGCTATCGAACACCGGGGAGCTGTTTTTT CASSTGQLSNTGELFF TRBV9*01 TRBJ2-2*01 28.0 1573.0 _CASSTGQLSNTGELFF 82 3737 EBV-BLMF1 EBV 0.65 2531 NEG 124 3613 9 EBV BLMF1 GLCTLVAML effector memory T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*02:01 B2M MHCI -3263 chip0420_872390 11.52 11.0 Chip1 T1D_2 T1D TGTGCAGCATACGCAGGCAACATGCTCACCTTT CAAYAGNMLTF TRAV29/DV5*01 TRAJ39*01 2.0 199.0 TGCGCCAGCAGGATGGGGGCCGGGGATACGCAGTATTTT CASRMGAGDTQYF TRBV10-2*01 TRBJ2-3*01 4.0 59.0 CAAYAGNMLTF_CASRMGAGDTQYF 21 2497 EBV-BLMF1 EBV 1.0 2531 NEG 115 2382 9 EBV BLMF1 GLCTLVAML effector memory T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*02:01 B2M MHCI -3264 chip0420_420004 14.43 11.68 Chip1 T1D_1 T1D TGTGCCTGGAGGCCCCTCTTCGGGGGCGCGGCTGAAGCTTTCTTT CAWRPLFGGAAEAFF TRBV30*01 TRBJ1-1*01 2.0 58.0 _CAWRPLFGGAAEAFF 2 2084 EBV-BRLF1 EBV 0.73 1264 NEG 122 1962 12 EBV BRLF1 YVLDHLIVV effector T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*02:01 B2M MHCI -3265 chip0420_198159 6.03 13.23 Chip1 T1D_1 T1D TGTGCAGCGAATTATGGAGGAAGCCAAGGAAATCTCATCTTT CAANYGGSQGNLIF TRAV25*01 TRAJ42*01 38.0 2093.0 CAANYGGSQGNLIF_ 3 3869 M1 FLU 0.81 1250 M1 105 3764 7 InfluenzaA M1 GILGFVFTL transitional T cells between effector and memory populations PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*02:01 B2M MHCI -3266 chip0420_41107 8.96 7.79 Chip1 T1D_1 T1D TGCAGCGTCGGCTCCAGGGGAACTAATGAAAAACTGTTTTTT CSVGSRGTNEKLFF TRBV29-1*01 TRBJ1-4*01 36.0 2034.0 _CSVGSRGTNEKLFF 283 3067 EBV-BLMF1 EBV 0.82 2531 NEG 123 2944 8 EBV BLMF1 GLCTLVAML effector memory T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*02:01 B2M MHCI -3267 chip0420_505017 -3.03 8.34 Chip1 T1D_1 T1D _ 6746 5840 PGT-178 PGT 0.75 1480 PGT-178 114 5726 2 HomoSapiens PGT LLAGIGTVPI Naive T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*02:01 B2M MHCI -3268 chip0420_299177 13.05 13.25 Chip1 T1D_2 T1D TGTGCAGAGATAAAGGCAGGCAACATGCTCACCTTT CAEIKAGNMLTF TRAV13-2*01 TRAJ39*01 1.0 169.0 TGCGCCAGCCGTCCCGAGATGGGGTGATGAACACTGAAGCTTTCTTT CASRPEMgg?VMNTEAFF TRBV4-3*01 TRBJ1-1*01 12.0 519.0 CAEIKAGNMLTF_CASRPEMgg?VMNTEAFF 1 1425 EBV-BRLF1 EBV 1.0 1264 EBV-BRLF1 141 1284 11 EBV BRLF1 YVLDHLIVV effector T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*02:01 B2M MHCI -3269 chip0420_683743 -0.84 9.72 Chip1 T1D_1 T1D TGTGCCAGCAGTCCGACTAGCGGGAGACCAGATACGCAGTATTTT CASSPTSGRPDTQYF TRBV2*01 TRBJ2-3*01 23.0 1371.0 _CASSPTSGRPDTQYF 1 4918 MART1-ALA MART1 0.44 269 MART1-ALA 137 4781 3 HomoSapiens MART1 ALAGIGILTV Naive T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*02:01 B2M MHCI -3270 chip0420_479899 12.1 8.73 Chip1 T1D_2 T1D TGTGCCAGCTCTTTGCCGGGCCTGTACTATGGCTACACCTTC CASSLPGLYYGYTF TRBV19*01 TRBJ1-2*01 10.0 652.0 _CASSLPGLYYGYTF 1 1951 EBV-BRLF1 EBV 0.83 1264 EBV-BRLF1 144 1807 10 EBV BRLF1 YVLDHLIVV effector memory T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*02:01 B2M MHCI -3271 chip0420_793072 15.07 9.01 Chip1 T1D_1 T1D TGCAGCGTCGGCTCCAGGGGAACTAATGAAAAACTGTTTTTT CSVGSRGTNEKLFF TRBV29-1*01 TRBJ1-4*01 25.0 1774.0 _CSVGSRGTNEKLFF 283 2109 EBV-BLMF1 EBV 0.62 2531 NEG 138 1971 12 EBV BLMF1 GLCTLVAML effector T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*02:01 B2M MHCI -3272 chip0420_519368 -1.75 9.23 Chip1 T1D_1 T1D TGTGCCGTGAATCCTTATGGCTCTAGCAACACAGGCAAACTAATCTTT CAVNPYGSSNTGKLIF TRAV8-1*01 TRAJ37*01 47.0 2193.0 TGTGCCAGTCGTATAGCCACCTGGACAGGGAGTCTTTGGGGAGCTTTCTTT CASRIATWTGSLWGAFF TRBV19*01 TRBJ1-1*01 4.0 58.0 CAVNPYGSSNTGKLIF_CASRIATWTGSLWGAFF 1 5147 ROTA-VP3 ROTA 0.73 41 NEG 122 5025 4 RotavirusA VP3 YLLPGWKL Naive T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*02:01 B2M MHCI -3273 chip0420_515021 6.97 13.2 Chip1 T1D_1 T1D TGTGCTCTGAGTGAGGGAGTGGGTACTGGAGGCTTCAAAACTATCTTT CALSEGVGTGGFKTIF TRAV19*01 TRAJ9*01 31.0 2059.0 CALSEGVGTGGFKTIF_ 1 3478 M1 FLU 0.81 1250 M1 121 3357 7 InfluenzaA M1 GILGFVFTL transitional T cells between effector and memory populations PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*02:01 B2M MHCI -3274 chip0420_417482 12.27 13.52 Chip1 T1D_2 T1D _ 6746 1576 EBV-BRLF1 EBV 0.75 1264 NEG 132 1444 11 EBV BRLF1 YVLDHLIVV effector T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*02:01 B2M MHCI -3275 chip0420_52043 10.96 11.86 Chip1 T1D_2 T1D TGCGCCAGCAGCTTGGCAGGGGGCGGCGAGCAGTACTTC CASSLAGGGEQYF TRBV5-1*01 TRBJ2-7*01 33.0 2730.0 _CASSLAGGGEQYF 1 1911 EBV-BRLF1 EBV 0.77 1264 EBV-BRLF1 134 1777 9 EBV BRLF1 YVLDHLIVV effector memory T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*02:01 B2M MHCI -3276 chip0420_807544 9.69 9.32 Chip1 T1D_1 T1D TGTGCCAGCAGCACGGGACAGCTATCGAACACCGGGGAGCTGTTTTTT CASSTGQLSNTGELFF TRBV9*01 TRBJ2-2*01 50.0 2739.0 _CASSTGQLSNTGELFF 82 3343 EBV-BLMF1 EBV 0.5 2531 NEG 113 3230 8 EBV BLMF1 GLCTLVAML effector memory T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*02:01 B2M MHCI -3277 chip0420_306389 9.21 9.39 Chip1 T1D_2 T1D TGTGCAGCGTATGCAGGCAACATGCTCACCTTT CAAYAGNMLTF TRAV29/DV5*01 TRAJ39*01 5.0 790.0 TGCGCCAGCAGAGCGGGAGCCGGGGATACGCAGTATTTT CASRAGAGDTQYF TRBV10-2*01 TRBJ2-3*01 5.0 366.0 CAAYAGNMLTF_CASRAGAGDTQYF 18 3578 EBV-BLMF1 EBV 0.9 2531 NEG 131 3447 8 EBV BLMF1 GLCTLVAML effector memory T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*02:01 B2M MHCI -3278 chip0420_255230 5.43 9.67 Chip1 T1D_1 T1D _ 6746 3379 EBV-LMP2-FLY EBV 1.0 355 EBV-LMP2-FLY 120 3259 6 EBV LMP2 FLYALALLL central memory T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*02:01 B2M MHCI -3279 chip0420_549940 11.95 10.7 Chip1 T1D_1 T1D TGTGCCAGCAGCACGGGACAGCTATCGAACACCGGAGAGCTGTTTTTT CASSTGQLSNTGELFF TRBV9*01 TRBJ2-2*01 16.0 861.0 _CASSTGQLSNTGELFF 82 3338 EBV-BLMF1 EBV 1.0 2531 NEG 111 3227 9 EBV BLMF1 GLCTLVAML effector memory T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*02:01 B2M MHCI -3280 chip0420_499795 6.34 14.29 Chip1 T1D_1 T1D TGTGCCAGTAGTGTCTGGGCAGGGGAGGCCCAGTACTTC CASSVWAGEAQYF TRBV19*01 TRBJ2-5*01 13.0 311.0 _CASSVWAGEAQYF 1 3524 M1 FLU 0.79 1250 M1 110 3414 7 InfluenzaA M1 GILGFVFTL transitional T cells between effector and memory populations PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*02:01 B2M MHCI -3281 chip0420_325842 13.88 7.88 Chip1 T1D_2 T1D TGTGTGGTGAACGGCAGGGATAGCAGCTATAAATTGATCTTC CVVNGRDSSYKLIF TRAV12-1*01 TRAJ12*01 47.0 2456.0 TGTGCCAGCAGCTCGGGACTAGTCGCCCCCGGGGAGCTGTTTTTT CASSSGLVAPGELFF TRBV2*01 TRBJ2-2*01 102.0 6337.0 CVVNGRDSSYKLIF_CASSSGLVAPGELFF 98 3258 EBV-BLMF1 EBV 0.83 2531 NEG 138 3120 10 EBV BLMF1 GLCTLVAML effector memory T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*02:01 B2M MHCI -3282 chip0420_287430 10.23 10.55 Chip1 T1D_1 T1D _ 6746 3846 EBV-BLMF1 EBV 0.6 2531 NEG 123 3723 9 EBV BLMF1 GLCTLVAML effector memory T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*02:01 B2M MHCI -3283 chip0420_130400 11.37 10.97 Chip1 T1D_1 T1D _ 6746 2629 EBV-BLMF1 EBV 0.63 2531 NEG 119 2510 9 EBV BLMF1 GLCTLVAML effector memory T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*02:01 B2M MHCI -3284 chip0420_92710 -2.1 8.36 Chip1 healthy_2 healthy _ 6746 6457 ZNT8-YAK-9 ZNT8 0.96 59 ZNT8-YAK-9 99 6358 2 HomoSapiens ZNT8 YAKWKLCSA Naive T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-B*08:01 B2M MHCI -3285 chip0420_825425 -3.47 8.68 Chip1 T1D_1 T1D _ 6746 6000 GP160-814-822 HIV 0.54 7 NEG 103 5897 2 HIV-1 GP160 LLNATDIAV Naive T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*02:01 B2M MHCI -3286 chip0420_689892 -2.99 8.16 Chip1 T1D_2 T1D TGTGCAATGAGAGAGCCTTCCATGGACACGGGCAGGAGAGCACTTACTTTT CAMREPSMDTGRRALTF TRAV14/DV4*01 TRAJ5*01 1.0 62.0 CTGTGCCAGTCGTATCTCCCCGGGGTTCGAGATTACAAACAATGAGCAGTTCTTC LCQSYLPGV??cEITNNEQFF TRBV19*01 TRBJ2-1*01 35.0 2012.0 CAMREPSMDTGRRALTF_LCQSYLPGV??cEITNNEQFF 1 8014 PREINS-6-14 INS 0.88 20 PREINS-6-14 114 7900 2 HomoSapiens PREINS RLLPLLALL Naive T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*02:01 B2M MHCI -3287 chip0420_39590 -4.09 8.74 Chip1 healthy_1 healthy _ 6746 5648 PGT-178 PGT 0.74 1480 PGT-178 130 5518 2 HomoSapiens PGT LLAGIGTVPI Naive T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*02:01 B2M MHCI -3288 chip0420_759913 5.2 9.59 Chip1 T1D_1 T1D TGTGCCAGCAGCCCGGGGGACGCCCGTGGCGAGCAGTACTTC CASSPGDARGEQYF TRBV5-6*01 TRBJ2-7*01 34.0 2127.0 _CASSPGDARGEQYF 12 4936 EBV-LMP1-1 EBV 0.89 237 NEG 107 4829 6 EBV LMP1 YLLEMLWRL central memory T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*02:01 B2M MHCI -3289 chip0420_628660 14.9 9.43 Chip1 T1D_2 T1D TGTGCCCTGAACACCGACAAGCTCATCTTT CALNTDKLIF TRAV8-1*01 TRAJ34*01 30.0 2451.0 CALNTDKLIF_ 4 3123 EBV-BRLF1 EBV 0.71 1264 NEG 137 2986 12 EBV BRLF1 YVLDHLIVV effector T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*02:01 B2M MHCI -3290 chip0420_180840 5.47 9.29 Chip1 T1D_2 T1D _ 6746 5041 EBV-LMP2-FLY EBV 0.94 355 EBV-LMP2-FLY 114 4927 6 EBV LMP2 FLYALALLL central memory T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*02:01 B2M MHCI -3291 chip0420_251167 11.89 8.85 Chip1 T1D_1 T1D TGCAGCGTCGGCTCCAGGGGAACTAATGAAAAACTGTTTTTT CSVGSRGTNEKLFF TRBV29-1*01 TRBJ1-4*01 109.0 3340.0 _CSVGSRGTNEKLFF 283 2493 EBV-BLMF1 EBV 0.5 2531 NEG 106 2387 10 EBV BLMF1 GLCTLVAML effector memory T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*02:01 B2M MHCI -3292 chip0420_742697 9.57 11.68 Chip1 T1D_1 T1D TGTGCCAGCAGCACGGGACAGCTATCGAACACCGGGGAGCTGTTTTTT CASSTGQLSNTGELFF TRBV9*01 TRBJ2-2*01 23.0 881.0 _CASSTGQLSNTGELFF 82 5084 EBV-BLMF1 EBV 0.58 2531 EBV-BLMF1 130 4954 7 EBV BLMF1 GLCTLVAML transitional T cells between effector and memory populations PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*02:01 B2M MHCI -3293 chip0420_681117 8.77 8.64 Chip1 T1D_1 T1D TGTGCCAGCAGCCCAGTTAGCGGGTCAACCTACGAGCAGTACTTC CASSPVSGSTYEQYF TRBV3-1*01 TRBJ2-7*01 1.0 24.0 _CASSPVSGSTYEQYF 80 4088 EBV-BLMF1 EBV 0.86 2531 EBV-BLMF1 128 3960 8 EBV BLMF1 GLCTLVAML effector memory T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*02:01 B2M MHCI -3294 chip0420_532633 12.28 6.76 Chip1 T1D_1 T1D TGCGGCACAGAGGAACCTAACGACTACAAGCTCAGCTTT CGTEEPNDYKLSF TRAV30*01 TRAJ20*01 1.0 113.0 CGTEEPNDYKLSF_ 22 3994 EBV-BLMF1 EBV 0.64 2531 NEG 130 3864 10 EBV BLMF1 GLCTLVAML effector memory T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*02:01 B2M MHCI -3295 chip0420_524609 12.9 7.42 Chip1 T1D_1 T1D TGCAGCGTCGGCTCCAGGGGAACTAATGAAAAACTGTTTTTT CSVGSRGTNEKLFF TRBV29-1*01 TRBJ1-4*01 20.0 1181.0 _CSVGSRGTNEKLFF 283 2179 EBV-BLMF1 EBV 0.83 2531 NEG 131 2048 10 EBV BLMF1 GLCTLVAML effector memory T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*02:01 B2M MHCI -3296 chip0420_880266 -3.92 9.64 Chip1 T1D_1 T1D TGTGCAATTAGTGCACGGGAGGGGGAATCATACTCAGCTTT CAISARga?GGIILSF TRAV12-3*01 TRAJ10*01 3.0 223.0 TGTGCCATCAGTGATCCCGGGACTAGCGGCCTCAATGAGCAGTTCTTC CAISDPGTSGLNEQFF TRBV10-3*01 TRBJ2-1*01 22.0 990.0 CAISARga?GGIILSF_CAISDPGTSGLNEQFF 1 5324 PGT-178 PGT 0.55 1480 PGT-178 117 5207 2 HomoSapiens PGT LLAGIGTVPI Naive T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*02:01 B2M MHCI -3297 chip0420_854232 11.16 9.61 Chip1 T1D_2 T1D TGTGCCAGCACCAGTGGATCGGGCTTTTGAGCAGTACTTC CASTSGtc??ggAFEQYF TRBV7-9*01 TRBJ2-7*01 18.0 1206.0 _CASTSGtc??ggAFEQYF 1 3212 EBV-BRLF1 EBV 0.96 1264 EBV-BRLF1 136 3076 9 EBV BRLF1 YVLDHLIVV effector memory T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*02:01 B2M MHCI -3298 chip0420_786917 12.7 10.95 Chip1 T1D_1 T1D TGTGCCGTGCCTGCGCTCGACAAGCTCATCTTT CAVPALDKLIF TRAV8-1*01 TRAJ34*01 33.0 2289.0 TGTGCCAGCAGTGAGGCATTTCTAGCGGACAATGAGCAGTTCTTC CASSEAFLADNEQFF TRBV6-4*01 TRBJ2-1*01 2.0 55.0 CAVPALDKLIF_CASSEAFLADNEQFF 1 3372 EBV-BRLF1 EBV 0.83 1264 NEG 121 3251 9 EBV BRLF1 YVLDHLIVV effector memory T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*02:01 B2M MHCI -3299 chip0420_251119 15.76 10.9 Chip1 T1D_1 T1D TGCGGCACAGAGGAACCTAACGACTACAAGCTCAGCTTT CGTEEPNDYKLSF TRAV30*01 TRAJ20*01 45.0 2074.0 TGTGCCAGCAGCACGGGACCGCTATCGAACACCGGGGAGCTGTTTTTT CASSTGPLSNTGELFF TRBV9*01 TRBJ2-2*01 58.0 2067.0 CGTEEPNDYKLSF_CASSTGPLSNTGELFF 1 2584 EBV-BLMF1 EBV 0.71 2531 NEG 125 2459 12 EBV BLMF1 GLCTLVAML effector T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*02:01 B2M MHCI -3300 chip0420_546281 14.41 9.88 Chip1 T1D_1 T1D TGTGCCGTGGAGGGGCATGACAAGATCATCTTT CAVEGHDKIIF TRAV8-1*01 TRAJ30*01 22.0 1818.0 TGTGCCAGCAGTCCGGACCAAACTAGCTCCTACAACGAGCAGTTCTTC CASSPDQTSSYNEQFF TRBV27*01 TRBJ2-1*01 10.0 536.0 CAVEGHDKIIF_CASSPDQTSSYNEQFF 1 3494 EBV-BRLF1 EBV 0.9 1264 EBV-BRLF1 122 3372 12 EBV BRLF1 YVLDHLIVV effector T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*02:01 B2M MHCI -3301 chip0420_806482 -2.19 12.71 Chip1 T1D_1 T1D _ 6746 3524 PGT-178 PGT 0.7 1480 PGT-178 133 3391 1 HomoSapiens PGT LLAGIGTVPI Naive T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*02:01 B2M MHCI -3302 chip0420_192731 -1.76 9.04 Chip1 T1D_1 T1D TGCAGTGCTAGAGGCCAATACGCGAACACCGGGGAGCTGTTTTTT CSARGQYANTGELFF TRBV20-1*01 TRBJ2-2*01 63.0 3173.0 _CSARGQYANTGELFF 1 5970 PGT-178 PGT 0.63 1480 PGT-178 111 5859 3 HomoSapiens PGT LLAGIGTVPI Naive T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*02:01 B2M MHCI -3303 chip0420_580888 9.14 10.03 Chip1 healthy_1 healthy _ 6746 3436 EBV-BRLF1 EBV 0.88 1264 EBV-BRLF1 127 3309 8 EBV BRLF1 YVLDHLIVV effector memory T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*02:01 B2M MHCI -3304 chip0420_84611 8.62 9.81 Chip1 T1D_2 T1D TGTGCAGCTCCCCCGCCGAATGCAGGCAACATGCTCACCTTT CAAPPPNAGNMLTF TRAV29/DV5*01 TRAJ39*01 42.0 2437.0 TGTGCCAGCAGCCCAGGGACGGGAGGGCACGAGCAGTACTTC CASSPGTGGHEQYF TRBV7-9*01 TRBJ2-7*01 27.0 1700.0 CAAPPPNAGNMLTF_CASSPGTGGHEQYF 3 4849 EBV-BLMF1 EBV 0.86 2531 NEG 108 4741 8 EBV BLMF1 GLCTLVAML effector memory T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*02:01 B2M MHCI -3305 chip0420_383952 -2.08 9.7 Chip1 T1D_2 T1D TGTGCCAGCAGCCGAGAAGAACAGGGCTATTTTCAGTACTTC CASSREEQGYFQYF TRBV7-9*01 TRBJ2-4*01 10.0 536.0 _CASSREEQGYFQYF 1 5099 MART1-ALA MART1 0.43 269 NEG 107 4992 3 HomoSapiens MART1 ALAGIGILTV Naive T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*02:01 B2M MHCI -3306 chip0420_342768 10.55 10.14 Chip1 T1D_1 T1D TGCAGCGTCGGCTCCAGGGGAACTAATGAAAAACTGTTTTTT CSVGSRGTNEKLFF TRBV29-1*01 TRBJ1-4*01 83.0 3849.0 _CSVGSRGTNEKLFF 283 3009 EBV-BLMF1 EBV 0.73 2531 NEG 113 2896 9 EBV BLMF1 GLCTLVAML effector memory T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*02:01 B2M MHCI -3307 chip0420_214984 12.9 11.73 Chip1 T1D_2 T1D TGTGCCAGCAGTACCTATCTCGGCAGGGGCACTGAAGCTTTCTTT CASSTYLGRGTEAFF TRAV9-1*01 TRAJ40*01 2.0 15.0 TGTGCCAGCAGTACCTATCTCGGCAGGGGCACTGAAGCTTTCTTT CASSTYLGRGTEAFF TRBV27*01 TRBJ1-1*01 78.0 3484.0 CASSTYLGRGTEAFF_CASSTYLGRGTEAFF 1 2310 EBV-BRLF1 EBV 0.92 1264 NEG 114 2196 9 EBV BRLF1 YVLDHLIVV effector memory T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*02:01 B2M MHCI -3308 chip0420_16157 13.95 11.07 Chip1 T1D_1 T1D TGCAGCGTCGGCTCCAGGGGAACTAATGAAAAACTGTTTTTT CSVGSRGTNEKLFF TRBV29-1*01 TRBJ1-4*01 144.0 7604.0 _CSVGSRGTNEKLFF 283 1693 EBV-BLMF1 EBV 0.5 2531 NEG 119 1574 12 EBV BLMF1 GLCTLVAML effector T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*02:01 B2M MHCI -3309 chip0420_528447 13.96 11.56 Chip1 T1D_1 T1D _ 6746 2117 EBV-BLMF1 EBV 0.9 2531 NEG 129 1988 12 EBV BLMF1 GLCTLVAML effector T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*02:01 B2M MHCI -3310 chip0420_247311 6.02 12.72 Chip1 healthy_1 healthy _ 6746 4632 M1 FLU 0.74 1250 M1 127 4505 7 InfluenzaA M1 GILGFVFTL transitional T cells between effector and memory populations PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*02:01 B2M MHCI -3311 chip0420_379715 -2.01 8.13 Chip1 T1D_1 T1D TGTGCCTGGGCCAGGGCTGGTTCACCCCTCCACTTT CAWARAGSPLHF TRBV30*01 TRBJ1-6*01 16.0 883.0 _CAWARAGSPLHF 1 6078 CVB3-P3A CVB 0.69 77 CVB3-P3A 129 5949 2 CoxsackievirusB P3A GIIYIIYKL Naive T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*02:01 B2M MHCI -3312 chip0420_209314 6.08 10.02 Chip1 T1D_1 T1D TGTGCTGTGGAACCTGCTTACTACCTCAGGAACCTACAAATACATCTTT CAVEPAYY??cSGTYKYIF TRAV2*01 TRAJ40*01 3.0 196.0 TGTGCCAGCAGTGTGCAGGGAGGTAACTATGGCTACACCTTC CASSVQGGNYGYTF TRBV6-1*01 TRBJ1-2*01 23.0 1276.0 CAVEPAYY??cSGTYKYIF_CASSVQGGNYGYTF 1 4207 EBV-LMP2-FLY EBV 0.96 355 EBV-LMP2-FLY 139 4068 6 EBV LMP2 FLYALALLL central memory T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*02:01 B2M MHCI -3313 chip0420_530287 9.96 11.0 Chip1 T1D_1 T1D TGTGCCAGCAGCCTTCTGACTTCTGGGGCCAACGTCCTGACTTTC CASSLLTSGANVLTF TRBV11-2*01 TRBJ2-6*01 17.0 683.0 _CASSLLTSGANVLTF 2 4730 EBV-BLMF1 EBV 0.71 2531 NEG 124 4606 9 EBV BLMF1 GLCTLVAML effector memory T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*02:01 B2M MHCI -3314 chip0420_381845 8.54 11.25 Chip1 T1D_2 T1D TGCGCCAGCAGTCATCAGGCCTCCGAGCAGTACTTC CASSHQASEQYF TRBV10-1*01 TRBJ2-7*01 18.0 1166.0 _CASSHQASEQYF 4 4081 EBV-BRLF1 EBV 0.95 1264 EBV-BRLF1 116 3965 7 EBV BRLF1 YVLDHLIVV transitional T cells between effector and memory populations PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*02:01 B2M MHCI -3315 chip0420_716521 10.79 8.89 Chip1 healthy_2 healthy TGTGCTAGTGGTTCAACGGGGCCCGGCGATTCACCCCTCCACTTT CASGSTGPGDSPLHF TRBV12-5*01 TRBJ1-6*01 54.0 2449.0 _CASGSTGPGDSPLHF 1 2727 BZLF1-190-197 EBV 0.71 2156 NEG 121 2606 10 EBV BZLF1 RAKFKQLL effector memory T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-B*08:01 B2M MHCI -3316 chip0420_709009 -2.59 9.85 Chip1 T1D_1 T1D TGTGCCAGCAGTTATGGGCCCGGGCCAGGGGTCGATAGGTACCAAGAGACCCAGTACTTC CASSYGPGPGVDRYQETQYF TRBV6-2*01,TRBV6-3*01 TRBJ2-5*01 28.0 628.0 _CASSYGPGPGVDRYQETQYF 1 4823 PGT-178 PGT 0.77 1480 PGT-178 110 4713 3 HomoSapiens PGT LLAGIGTVPI Naive T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*02:01 B2M MHCI -3317 chip0420_378612 -3.63 12.84 Chip1 T1D_1 T1D TGTGCCAGTAGTCCGCCGGGGGGGCGCGGGACTGAAGCTTTCTTT CASSPPGGRGTEAFF TRBV19*01 TRBJ1-1*01 17.0 931.0 _CASSPPGGRGTEAFF 1 4475 PGT-178 PGT 0.83 1480 PGT-178 120 4355 1 HomoSapiens PGT LLAGIGTVPI Naive T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*02:01 B2M MHCI -3318 chip0420_282252 10.85 9.82 Chip1 T1D_1 T1D TGTGCCATCAGTGAGGGGACGCTGAGCTCCTACAATGAGCAATTCTTC CAISEGTLSSYNEQFF TRBV10-3*01 TRBJ2-1*01 19.0 1157.0 _CAISEGTLSSYNEQFF 7 2280 EBV-BRLF1 EBV 0.87 1264 EBV-BRLF1 130 2150 9 EBV BRLF1 YVLDHLIVV effector memory T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*02:01 B2M MHCI -3319 chip0420_260934 5.81 12.03 Chip1 T1D_2 T1D TGCGGCCCCGTCGACCTCACCGACAAGCTCATCTTT CGPVDLTDKLIF TRAV30*01 TRAJ34*01 10.0 955.0 CGPVDLTDKLIF_ 1 4173 GAG-433-442 HIV 0.8 19 NEG 120 4053 7 HIV-1 GAG FLGKIWPSYK transitional T cells between effector and memory populations PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*02:01 B2M MHCI -3320 chip0420_189320 -3.95 10.74 Chip1 T1D_1 T1D TGTGCCAACAGTTACCAGTACGGGGGGCGGGGTCCTTCCGCCGGGGAGCTGTTTTTT CANSYQYGGRGPSAGELFF TRBV6-2*01,TRBV6-3*01 TRBJ2-2*01 27.0 616.0 _CANSYQYGGRGPSAGELFF 1 4677 PGT-178 PGT 0.44 1480 PGT-178 134 4543 2 HomoSapiens PGT LLAGIGTVPI Naive T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*02:01 B2M MHCI -3321 chip0420_570471 -2.76 8.67 Chip1 T1D_2 T1D _ 6746 5843 GAG-433-442 HIV 0.75 19 NEG 113 5730 2 HIV-1 GAG FLGKIWPSYK Naive T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*02:01 B2M MHCI -3322 chip0420_814525 -2.84 13.31 Chip1 T1D_1 T1D TGTGCCAGCAGCAAAACAGGGGGCGAAGGAGAGACCCAGTACTTC CASSKTGGEGETQYF TRBV6-1*01 TRBJ2-5*01 48.0 1899.0 _CASSKTGGEGETQYF 1 4220 PGT-178 PGT 0.47 1480 PGT-178 128 4092 1 HomoSapiens PGT LLAGIGTVPI Naive T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*02:01 B2M MHCI -3323 chip0420_517868 -1.39 9.96 Chip1 T1D_1 T1D TGTGCAATGAGCGGATCTAACTTTGGAAATGAGAAATTAACCTTT CAMSGSNFGNEKLTF TRAV12-3*01 TRAJ48*01 52.0 1540.0 CAMSGSNFGNEKLTF_ 6 6296 PGT-178 PGT 0.53 1480 PGT-178 120 6176 3 HomoSapiens PGT LLAGIGTVPI Naive T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*02:01 B2M MHCI -3324 chip0420_455838 15.44 9.54 Chip1 T1D_1 T1D _ 6746 2742 EBV-BLMF1 EBV 0.55 2531 NEG 107 2635 12 EBV BLMF1 GLCTLVAML effector T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*02:01 B2M MHCI -3325 chip0420_136628 12.84 7.54 Chip1 T1D_2 T1D _ 6746 2997 EBV-BLMF1 EBV 0.75 2531 NEG 108 2889 10 EBV BLMF1 GLCTLVAML effector memory T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*02:01 B2M MHCI -3326 chip0420_770716 -3.11 13.08 Chip1 healthy_1 healthy TGTGCCTTCATCCCGATATCTAACTTTGGAAATGAGAAATTAACCTTT CAFIPISNFGNEKLTF TRAV24*01 TRAJ48*01 11.0 234.0 CAFIPISNFGNEKLTF_ 1 2802 M1 FLU 0.75 1250 NEG 119 2683 1 InfluenzaA M1 GILGFVFTL Naive T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*02:01 B2M MHCI -3327 chip0420_760056 10.75 11.82 Chip1 T1D_2 T1D TGCAGCGACAGAGACGGAGGAAACTATGGCTACACCTTC CSDRDGGNYGYTF TRBV29-1*01 TRBJ1-2*01 74.0 4814.0 _CSDRDGGNYGYTF 7 2440 EBV-BRLF1 EBV 1.0 1264 EBV-BRLF1 115 2325 9 EBV BRLF1 YVLDHLIVV effector memory T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*02:01 B2M MHCI -3328 chip0420_510476 11.73 10.81 Chip1 T1D_2 T1D TGCGCCAGCAGGATGGGGGCCGGGGATACGCAGTATTTT CASRMGAGDTQYF TRBV10-2*01 TRBJ2-3*01 2.0 36.0 _CASRMGAGDTQYF 90 3410 EBV-BLMF1 EBV 0.67 2531 NEG 127 3283 9 EBV BLMF1 GLCTLVAML effector memory T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*02:01 B2M MHCI -3329 chip0420_303299 11.14 10.16 Chip1 T1D_2 T1D TGTGTGGTGAACGGCAGGGATAGCAGCTATAAATTGATCTTC CVVNGRDSSYKLIF TRAV12-1*01 TRAJ12*01 2.0 143.0 TGTGCCAGCAGCTCGGGACTAGTCGCCCCCGGGGAGCTGTTTTTT CASSSGLVAPGELFF TRBV2*01 TRBJ2-2*01 18.0 1099.0 CVVNGRDSSYKLIF_CASSSGLVAPGELFF 98 3198 EBV-BLMF1 EBV 0.67 2531 NEG 127 3071 9 EBV BLMF1 GLCTLVAML effector memory T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*02:01 B2M MHCI -3330 chip0420_678910 15.95 11.61 Chip1 T1D_1 T1D TGTGCCAGCAGCCCAGTTAGCGGGTCAACCTACGAGCAGTACCTC CASSPVSGSTYEQYL TRBV3-1*01 TRBJ2-7*01 42.0 2809.0 _CASSPVSGSTYEQYL 1 1881 EBV-BLMF1 EBV 0.78 2531 NEG 116 1765 12 EBV BLMF1 GLCTLVAML effector T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*02:01 B2M MHCI -3331 chip0420_188519 4.8 11.95 Chip1 T1D_2 T1D _ 6746 2816 ROTA-VP3 ROTA 0.5 41 NEG 124 2692 6 RotavirusA VP3 YLLPGWKL central memory T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*02:01 B2M MHCI -3332 chip0420_140243 -3.48 8.84 Chip1 T1D_1 T1D TGTGCTACGGACGCGGCCGGTAACCAGTTCTATTTT CATDAAGNQFYF TRAV17*01 TRAJ49*01 27.0 2111.0 CATDAAGNQFYF_ 1 5003 CVB3-P3C CVB 0.47 1 NEG 129 4874 2 CoxsackievirusB P3C ILMNDQEVGV Naive T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*02:01 B2M MHCI -3333 chip0420_882944 10.8 10.89 Chip1 T1D_2 T1D TGTGCCAGCAGCCCCTCGACTAGCGGGAGTGGGGAGACCCAGTACTTC CASSPSTSGSGETQYF TRBV3-1*01 TRBJ2-5*01 34.0 2019.0 _CASSPSTSGSGETQYF 18 3839 EBV-BRLF1 EBV 0.92 1264 EBV-BRLF1 124 3715 9 EBV BRLF1 YVLDHLIVV effector memory T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*02:01 B2M MHCI -3334 chip0420_24921 10.58 11.37 Chip1 T1D_1 T1D TGTGCCAGCAGCCCAGTTAGCGGGTCAACCTACGAGCAGTACTTC CASSPVSGSTYEQYF TRBV3-1*01 TRBJ2-7*01 30.0 1727.0 _CASSPVSGSTYEQYF 80 3406 EBV-BLMF1 EBV 0.94 2531 EBV-BLMF1 126 3280 9 EBV BLMF1 GLCTLVAML effector memory T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*02:01 B2M MHCI -3335 chip0420_208886 -3.79 11.23 Chip1 healthy_1 healthy TGTGCCAGCAGCTTAGAAGTAGGGGGCGATAACACTGAAGCTTTCTTT CASSLEVGGDNTEAFF TRBV7-3*01 TRBJ1-1*01 2.0 48.0 _CASSLEVGGDNTEAFF 1 4063 PGT-178 PGT 0.83 1480 PGT-178 99 3964 1 HomoSapiens PGT LLAGIGTVPI Naive T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*02:01 B2M MHCI -3336 chip0420_785470 5.21 11.67 Chip1 T1D_2 T1D TGTGCCAGCAGTTGGTCGGGGTCGACCGGGGAGCTGTTTTTT CASSWSGSTGELFF TRBV6-2*01,TRBV6-3*01 TRBJ2-2*01 9.0 293.0 _CASSWSGSTGELFF 1 4318 IGRP-152-160-MLI IGRP 0.62 6 NEG 117 4201 6 HomoSapiens IGRP FLWSVFMLI central memory T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*02:01 B2M MHCI -3337 chip0420_752555 10.81 9.48 Chip1 T1D_1 T1D TGTGCCAGCAGCCAAAGCCCGGGTGGTACGCAGTATTTT CASSQSPGGTQYF TRBV14*01 TRBJ2-3*01 1.0 13.0 _CASSQSPGGTQYF 94 3787 EBV-BLMF1 EBV 0.47 2531 NEG 109 3678 9 EBV BLMF1 GLCTLVAML effector memory T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*02:01 B2M MHCI -3338 chip0420_827529 5.97 13.74 Chip1 T1D_1 T1D TGTGCCAGTAGTATAAATGGGGGCCGGAGGGATGGCTACACCTTC CASSINGGRRDGYTF TRBV19*01 TRBJ1-2*01 42.0 1660.0 _CASSINGGRRDGYTF 32 3958 M1 FLU 0.95 1250 M1 127 3831 7 InfluenzaA M1 GILGFVFTL transitional T cells between effector and memory populations PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*02:01 B2M MHCI -3339 chip0420_662191 12.05 10.56 Chip1 T1D_1 T1D TGTGCCACCCAACAGGGGAGGGACAGTCAGCCCCAGCATTTT CATQQGRDSQPQHF TRBV28*01 TRBJ1-5*01 39.0 1898.0 _CATQQGRDSQPQHF 52 5100 EBV-BLMF1 EBV 0.52 2531 EBV-BLMF1 129 4971 9 EBV BLMF1 GLCTLVAML effector memory T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*02:01 B2M MHCI -3340 chip0420_13143 14.57 13.2 Chip1 T1D_1 T1D TGCAGTGCTAGAGACGGGACAGGGAATGGCTACACCTTC CSARDGTGNGYTF TRBV20-1*01 TRBJ1-2*01 26.0 2002.0 _CSARDGTGNGYTF 14 999 EBV-BLMF1 EBV 1.0 2531 NEG 121 878 12 EBV BLMF1 GLCTLVAML effector T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*02:01 B2M MHCI -3341 chip0420_78445 8.01 14.0 Chip1 healthy_1 healthy TGTGCTGACGACGGGGTAGTTCCGGCGGCGCTGCTGCCGGACTCACCTTT CADDGVVPg?cGAAAGLTF TRAV21*01 TRAJ45*01 6.0 205.0 CADDGVVPg?cGAAAGLTF_ 1 3405 M1 FLU 0.72 1250 M1 103 3302 7 InfluenzaA M1 GILGFVFTL transitional T cells between effector and memory populations PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*02:01 B2M MHCI -3342 chip0420_743935 10.45 9.02 Chip1 T1D_1 T1D TGTGCCAGCAGCCAGGGATTGGCCAACGTCCTGACTTTC CASSQGLANVLTF TRBV3-1*01 TRBJ2-6*01 22.0 1754.0 _CASSQGLANVLTF 3 3791 EBV-BRLF1 EBV 0.91 1264 EBV-BRLF1 129 3662 10 EBV BRLF1 YVLDHLIVV effector memory T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*02:01 B2M MHCI -3343 chip0420_639396 -2.78 11.96 Chip1 T1D_1 T1D _ 6746 3858 IAPP-5-13 IAPP 0.44 30 IAPP-5-13 114 3744 1 HomoSapiens IAPP KLQVFLIVL Naive T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*02:01 B2M MHCI -3344 chip0420_628216 10.22 10.22 Chip1 T1D_1 T1D TGTGCCAGCAGCCCAGTTAGCGGGTCAACCTACGAGCAGTACTTC CASSPVSGSTYEQYF TRBV3-1*01 TRBJ2-7*01 29.0 1538.0 _CASSPVSGSTYEQYF 80 3900 EBV-BLMF1 EBV 0.92 2531 NEG 110 3790 9 EBV BLMF1 GLCTLVAML effector memory T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*02:01 B2M MHCI -3345 chip0420_545066 12.73 8.43 Chip1 T1D_2 T1D TGTGTGGTGAACGGCAGGGATAGCAGCTATAAATTGATCTTC CVVNGRDSSYKLIF TRAV12-1*01 TRAJ12*01 53.0 2115.0 TGTGCCAGCAGCTCGGGACTAGTCGCCCCCGGGGAGCTGTTTTTT CASSSGLVAPGELFF TRBV2*01 TRBJ2-2*01 53.0 3176.0 CVVNGRDSSYKLIF_CASSSGLVAPGELFF 98 2399 EBV-BLMF1 EBV 1.0 2531 NEG 130 2269 10 EBV BLMF1 GLCTLVAML effector memory T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*02:01 B2M MHCI -3346 chip0420_501658 6.03 12.65 Chip1 T1D_1 T1D TGTGCTTTCATGAAAGATGCTGGTGGTCCTAGCTATGGATCGCTGACATTT CAFMKDAGGPSYGSLTF TRAV38-1*01 TRAJ52*01 27.0 807.0 CAFMKDAGGPSYGSLTF_ 1 4498 M1 FLU 0.55 1250 NEG 130 4368 7 InfluenzaA M1 GILGFVFTL transitional T cells between effector and memory populations PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*02:01 B2M MHCI -3347 chip0420_314061 5.9 11.95 Chip1 T1D_1 T1D TGTGCCAGCAGCGAGAGTGGAAACACCATATATTTT CASSESGNTIYF TRBV7-9*01 TRBJ1-3*01 24.0 875.0 _CASSESGNTIYF 1 5032 ZNT8-153-161 ZNT8 0.98 41 ZNT8-153-161 123 4909 7 HomoSapiens ZNT8 VVTGVLVYL transitional T cells between effector and memory populations PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*02:01 B2M MHCI -3348 chip0420_149757 8.35 8.41 Chip1 T1D_3 T1D _ 6746 4440 EBNA3A-158-166 EBV 0.45 444 NEG 111 4329 8 EBV EBNA3A QAKWRLQTL effector memory T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-B*08:01 B2M MHCI -3349 chip0420_41323 8.69 8.35 Chip1 T1D_3 T1D TGTGCCAGCAGCCTCACCCTAATTAGCGGGGACTCCTACAATGAGCAGTTCTTC CASSLTLISGDSYNEQFF TRBV7-3*01 TRBJ2-1*01 43.0 1883.0 _CASSLTLISGDSYNEQFF 2 5236 BZLF1-190-197 EBV 0.44 2156 NEG 133 5103 8 EBV BZLF1 RAKFKQLL effector memory T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-B*08:01 B2M MHCI -3350 chip0420_721741 8.25 9.48 Chip1 T1D_2 T1D TGTGCAATGAGAGAGGGCACGAGCAACTTCAACAAATTTTACTTT CAMREGTSNFNKFYF TRAV14/DV4*01 TRAJ21*01 8.0 590.0 CAMREGTSNFNKFYF_ 1 2380 EBV-BRLF1 EBV 0.91 1264 EBV-BRLF1 123 2257 8 EBV BRLF1 YVLDHLIVV effector memory T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*02:01 B2M MHCI -3351 chip0420_589411 12.49 8.37 Chip1 T1D_2 T1D TGCGCCAGCAGAGCGGGAGCCGGGGATACGCAGTATTTT CASRAGAGDTQYF TRBV10-2*01 TRBJ2-3*01 4.0 69.0 _CASRAGAGDTQYF 59 2316 EBV-BLMF1 EBV 0.75 2531 NEG 121 2195 10 EBV BLMF1 GLCTLVAML effector memory T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*02:01 B2M MHCI -3352 chip0420_563236 8.8 13.85 Chip1 T1D_1 T1D _ 6746 2534 M1 FLU 0.92 1250 NEG 107 2427 11 InfluenzaA M1 GILGFVFTL effector T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*02:01 B2M MHCI -3353 chip0420_137518 10.84 12.12 Chip1 T1D_2 T1D TGTGCAGCGTATGCAGGCAACATGCTCACCTTT CAAYAGNMLTF TRAV29/DV5*01 TRAJ39*01 21.0 2076.0 TGCGCCAGCAGAGCGGGAGCCGGGGATACGCAGTATTTT CASRAGAGDTQYF TRBV10-2*01 TRBJ2-3*01 1.0 58.0 CAAYAGNMLTF_CASRAGAGDTQYF 18 2667 EBV-BLMF1 EBV 1.0 2531 NEG 127 2540 9 EBV BLMF1 GLCTLVAML effector memory T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*02:01 B2M MHCI -3354 chip0420_584817 7.74 7.91 Chip1 T1D_1 T1D TGTGCAGAGAGTACAAGTGGGGGAAAGCTTATCTTC CAESTSGGKLIF TRAV5*01 TRAJ23*01 1.0 86.0 TGCAGCGTCGGCTCCAGGGGAACTAATGAAAAACTGTTTTTT CSVGSRGTNEKLFF TRBV29-1*01 TRBJ1-4*01 57.0 2886.0 CAESTSGGKLIF_CSVGSRGTNEKLFF 19 4642 EBV-BLMF1 EBV 0.6 2531 NEG 138 4504 8 EBV BLMF1 GLCTLVAML effector memory T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*02:01 B2M MHCI -3355 chip0420_228552 15.03 10.74 Chip1 T1D_1 T1D TGTGCCAGCAATTCGGGACAGGTACTTCCCAATGAGCAGTTCTTC CASNSGQVLPNEQFF TRBV2*01 TRBJ2-1*01 55.0 3449.0 _CASNSGQVLPNEQFF 1 3082 EBV-BLMF1 EBV 0.56 2531 NEG 129 2953 12 EBV BLMF1 GLCTLVAML effector T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*02:01 B2M MHCI -3356 chip0420_806519 -2.12 12.9 Chip1 T1D_1 T1D _ 6746 3048 PTPRN-790-798 PTPRN 0.63 6 NEG 109 2939 1 HomoSapiens PTPRN TIADFWQMV Naive T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*02:01 B2M MHCI -3357 chip0420_866607 12.4 7.06 Chip1 T1D_1 T1D _ 6746 2773 EBV-BLMF1 EBV 0.92 2531 NEG 134 2639 10 EBV BLMF1 GLCTLVAML effector memory T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*02:01 B2M MHCI -3358 chip0420_842788 11.16 7.06 Chip1 healthy_1 healthy _ 6746 5784 EBV-LMP2-FLY EBV 0.93 355 EBV-LMP2-FLY 101 5683 10 EBV LMP2 FLYALALLL effector memory T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*02:01 B2M MHCI -3359 chip0420_688259 -4.21 8.11 Chip1 T1D_1 T1D TGTGCCAGCAGTGGCTTTCCGGGACTAGCGCAAGAGACCCAGTACTTC CASSGFPGLAQETQYF TRBV2*01 TRBJ2-5*01 34.0 1490.0 _CASSGFPGLAQETQYF 1 5521 PGT-178 PGT 0.47 1480 PGT-178 123 5398 2 HomoSapiens PGT LLAGIGTVPI Naive T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*02:01 B2M MHCI -3360 chip0420_113669 14.53 8.99 Chip1 T1D_1 T1D TGCGGCCCAGAGGAACCTAACGACTACAAGCTCAGCTTT CGPEEPNDYKLSF TRAV30*01 TRAJ20*01 32.0 2342.0 TGTGCCAGCAGCACGGGACAGCTATCGAACACCGGGGAGCTGTTTTTT CASSTGQLSNTGELFF TRBV9*01 TRBJ2-2*01 26.0 1588.0 CGPEEPNDYKLSF_CASSTGQLSNTGELFF 14 2075 EBV-BLMF1 EBV 0.62 2531 NEG 115 1960 12 EBV BLMF1 GLCTLVAML effector T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*02:01 B2M MHCI -3361 chip0420_53752 14.88 8.38 Chip1 T1D_1 T1D TGCAGCGTCGGCTCCAGGGGAACTAATGAAAAACTGTTTTTT CSVGSRGTNEKLFF TRBV29-1*01 TRBJ1-4*01 101.0 5237.0 _CSVGSRGTNEKLFF 283 3187 EBV-BLMF1 EBV 0.75 2531 NEG 124 3063 12 EBV BLMF1 GLCTLVAML effector T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*02:01 B2M MHCI -3362 chip0420_824431 5.72 13.2 Chip1 T1D_1 T1D _ 6746 5041 M1 FLU 0.72 1250 M1 118 4923 7 InfluenzaA M1 GILGFVFTL transitional T cells between effector and memory populations PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*02:01 B2M MHCI -3363 chip0420_706682 7.04 14.28 Chip1 T1D_1 T1D TGTGCCAGTAGTATCAGATCGGCATACGAGCAGTACTTC CASSIRSAYEQYF TRBV19*01 TRBJ2-7*01 28.0 2173.0 _CASSIRSAYEQYF 11 2757 M1 FLU 0.71 1250 M1 139 2618 7 InfluenzaA M1 GILGFVFTL transitional T cells between effector and memory populations PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*02:01 B2M MHCI -3364 chip0420_814291 11.74 13.22 Chip1 T1D_2 T1D TGTGCCCTGAACACCGACAAGCTCATCTTT CALNTDKLIF TRAV8-1*01 TRAJ34*01 2.0 365.0 CALNTDKLIF_ 4 1469 EBV-BRLF1 EBV 0.83 1264 NEG 125 1344 11 EBV BRLF1 YVLDHLIVV effector T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*02:01 B2M MHCI -3365 chip0420_228592 -1.44 9.29 Chip1 T1D_1 T1D TGCGCAATAAGCAAATCCCACTTTGGTCATGAGAAATTAACCTTT CAISKSHFGHEKLTF TRAV12-3*01 TRAJ48*01 3.0 247.0 TGTGCACTTACCCCATTTCACTTTGGCGCTGCGAAATTAACCTTT CALTPFHFGAAKLTF TRAV12-3*01 TRAJ48*01 2.0 15.0 0.25 CAISKSHFGHEKLTF_ 1 6627 PGT-178 PGT 0.93 1480 PGT-178 130 6497 3 HomoSapiens PGT LLAGIGTVPI Naive T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*02:01 B2M MHCI -3366 chip0420_817811 -1.05 7.66 Chip1 T1D_1 T1D _ 6746 6223 PGT-178 PGT 0.71 1480 PGT-178 129 6094 3 HomoSapiens PGT LLAGIGTVPI Naive T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*02:01 B2M MHCI -3367 chip0420_299104 -3.04 14.1 Chip1 T1D_1 T1D TGCAGCACCCACCTACGGCTAGTGGGTGTAGCTGAAGCTTTCTTT CSTHLRLVGVAEAFF TRBV29-1*01 TRBJ1-1*01 69.0 4813.0 _CSTHLRLVGVAEAFF 1 2891 PGT-178 PGT 0.53 1480 PGT-178 107 2784 1 HomoSapiens PGT LLAGIGTVPI Naive T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*02:01 B2M MHCI -3368 chip0420_6453 15.25 10.87 Chip1 T1D_2 T1D TGTGTGGTGAACGGCAGGGATAGCAGCTATAAATTGATCTCG CVVNGRDSSYKLIS TRAV12-1*01 TRAJ12*01 27.0 2031.0 TGTGCCAGCAGCTCGGGACTAGTCGCCCCCGGGGAGCTGTTTTTT CASSSGLVAPGELFF TRBV2*01 TRBJ2-2*01 76.0 5482.0 CVVNGRDSSYKLIS_CASSSGLVAPGELFF 3 2427 EBV-BLMF1 EBV 0.42 2531 NEG 113 2314 12 EBV BLMF1 GLCTLVAML effector T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*02:01 B2M MHCI -3369 chip0420_723175 13.65 7.75 Chip1 T1D_2 T1D TGCAGCGTGGGGACAGGGGGAACTAATGAAAAACTGTTTTTT CSVGTGGTNEKLFF TRBV29-1*01 TRBJ1-4*01 17.0 558.0 _CSVGTGGTNEKLFF 638 2415 EBV-BLMF1 EBV 0.83 2531 NEG 133 2282 10 EBV BLMF1 GLCTLVAML effector memory T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*02:01 B2M MHCI -3370 chip0420_551558 9.85 9.3 Chip1 T1D_1 T1D TGTGCCAGCAGCACGGGACAGCTATCGAACACCGGGGAGCTGTTTTTT CASSTGQLSNTGELFF TRBV9*01 TRBJ2-2*01 75.0 3714.0 _CASSTGQLSNTGELFF 82 4839 EBV-BLMF1 EBV 0.65 2531 NEG 108 4731 8 EBV BLMF1 GLCTLVAML effector memory T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*02:01 B2M MHCI -3371 chip0420_227791 8.27 11.61 Chip1 T1D_2 T1D _ 6746 4671 EBV-BLMF1 EBV 0.85 2531 NEG 128 4543 7 EBV BLMF1 GLCTLVAML transitional T cells between effector and memory populations PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*02:01 B2M MHCI -3372 chip0420_763748 4.93 10.62 Chip1 T1D_2 T1D TGTGCCAGCAGTTTACAGGGTGGGAACTATGGCTACACCTTC CASSLQGGNYGYTF TRBV6-5*01 TRBJ1-2*01 16.0 471.0 _CASSLQGGNYGYTF 4 2364 EBV-LMP2-FLY EBV 0.94 355 EBV-LMP2-FLY 118 2246 6 EBV LMP2 FLYALALLL central memory T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*02:01 B2M MHCI -3373 chip0420_700342 13.1 10.71 Chip1 T1D_1 T1D TGCGGCACAGAGGAACCTAACGACTACAAGCTCAGCTTT CGTEEPNDYKLSF TRAV30*01 TRAJ20*01 1.0 11.0 TGTGCTGACTTAGAATGCTGGTAACAACCGTAAGCTGATTTGG CADLECW??tNNRKLIW TRAV36/DV7*01 TRAJ38*01 3.0 131.0 0.75 CGTEEPNDYKLSF_ 22 3864 EBV-BLMF1 EBV 0.57 2531 EBV-BLMF1 122 3742 9 EBV BLMF1 GLCTLVAML effector memory T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*02:01 B2M MHCI -3374 chip0420_453532 12.44 8.26 Chip1 T1D_2 T1D _ 6746 2392 EBV-BLMF1 EBV 1.0 2531 NEG 117 2275 10 EBV BLMF1 GLCTLVAML effector memory T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*02:01 B2M MHCI -3375 chip0420_168193 16.11 11.07 Chip1 T1D_1 T1D _ 6746 2302 EBV-BLMF1 EBV 0.87 2531 NEG 120 2182 12 EBV BLMF1 GLCTLVAML effector T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*02:01 B2M MHCI -3376 chip0420_711771 10.12 11.21 Chip1 T1D_2 T1D TGTGTGGTGAACCCCTTTAGGATACAGCACCCTCACCTTT CVVNPFag??gaYSTLTF TRAV12-1*01 TRAJ11*01 2.0 70.0 TGTGCCAGCAGTTACATGTCCGGCGAAGCTTTCTTT CASSYMSGEAFF TRBV6-2*01,TRBV6-3*01 TRBJ1-1*01 23.0 1136.0 CVVNPFag??gaYSTLTF_CASSYMSGEAFF 2 3129 EBV-BRLF1 EBV 0.96 1264 EBV-BRLF1 147 2982 9 EBV BRLF1 YVLDHLIVV effector memory T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*02:01 B2M MHCI -3377 chip0420_124669 10.5 11.16 Chip1 T1D_2 T1D TGTGCCAGCAGCTCGGGACTAGTCGCCCCCGGGGAGCTGTTTTTT CASSSGLVAPGELFF TRBV2*01 TRBJ2-2*01 5.0 155.0 _CASSSGLVAPGELFF 133 4093 EBV-BLMF1 EBV 0.67 2531 NEG 117 3976 9 EBV BLMF1 GLCTLVAML effector memory T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*02:01 B2M MHCI -3378 chip0420_31129 12.09 13.71 Chip1 T1D_2 T1D _ 6746 925 EBV-BRLF1 EBV 0.88 1264 EBV-BRLF1 129 796 11 EBV BRLF1 YVLDHLIVV effector T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*02:01 B2M MHCI -3379 chip0420_508003 5.92 13.01 Chip1 T1D_1 T1D TGTGCTTATAGGTTTCGGGGATTCTGGTTCTGCAAGGCAACTGACCTTT CAYRFRGF??tGSARQLTF TRAV38-2/DV8*01 TRAJ22*01 1.0 10.0 CTGTGCCAGTAGTTCCTGGGGCTTCTGGCTACACCTTC LCQ*FLg?gASGYTF TRBV19*01 TRBJ1-2*01 16.0 1068.0 CAYRFRGF??tGSARQLTF_LCQ*FLg?gASGYTF 1 4796 M1 FLU 0.57 1250 NEG 124 4672 7 InfluenzaA M1 GILGFVFTL transitional T cells between effector and memory populations PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*02:01 B2M MHCI -3380 chip0420_416649 12.9 8.54 Chip1 T1D_2 T1D TGCAGCGTGGGGACAGGGGGAACTAATGAAAAACTGTTTTTT CSVGTGGTNEKLFF TRBV29-1*01 TRBJ1-4*01 25.0 1556.0 _CSVGTGGTNEKLFF 638 1775 EBV-BLMF1 EBV 0.8 2531 NEG 113 1662 10 EBV BLMF1 GLCTLVAML effector memory T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*02:01 B2M MHCI -3381 chip0420_269572 5.18 10.27 Chip1 T1D_2 T1D _ 6746 2922 M1 FLU 0.7 1250 M1 133 2789 6 InfluenzaA M1 GILGFVFTL central memory T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*02:01 B2M MHCI -3382 chip0420_225052 11.81 13.05 Chip1 T1D_1 T1D TGCAGCGTCGGCTCCAGGGGAACTAATGAAAAACTGTTTTTT CSVGSRGTNEKLFF TRBV29-1*01 TRBJ1-4*01 25.0 1596.0 _CSVGSRGTNEKLFF 283 1362 EBV-BLMF1 EBV 0.6 2531 NEG 128 1234 11 EBV BLMF1 GLCTLVAML effector T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*02:01 B2M MHCI -3383 chip0420_61281 8.94 9.45 Chip1 T1D_3 T1D TGTGCTCTCCTTGGCTTTAGCAACACAGGCAAACTAATCTTT CALLGFSNTGKLIF TRAV19*01 TRAJ37*01 9.0 839.0 TGTGCCAGCAGTCTCCACCTTCGACAGGATGAACAGCCCCAGCATTTT CASSLHLRQDEQPQHF TRBV28*01 TRBJ1-5*01 18.0 649.0 CALLGFSNTGKLIF_CASSLHLRQDEQPQHF 1 4256 EBNA3A-158-166 EBV 0.75 444 NEG 130 4126 8 EBV EBNA3A QAKWRLQTL effector memory T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-B*08:01 B2M MHCI -3384 chip0420_801981 13.52 11.53 Chip1 T1D_1 T1D _ 6746 3478 EBV-BLMF1 EBV 0.64 2531 NEG 109 3369 9 EBV BLMF1 GLCTLVAML effector memory T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*02:01 B2M MHCI -3385 chip0420_551045 8.05 11.32 Chip1 T1D_2 T1D TGTGCAATGAGAGAGGGCACGGGCAACTTCAACAAATTTTACTTT CAMREGTGNFNKFYF TRAV14/DV4*01 TRAJ21*01 51.0 2062.0 TGTGCCAGCAAGGGGATCGATGGCTACACCTTC CASKGIDGYTF TRBV13*01 TRBJ1-2*01 24.0 1629.0 CAMREGTGNFNKFYF_CASKGIDGYTF 6 3106 EBV-BRLF1 EBV 0.96 1264 EBV-BRLF1 135 2971 7 EBV BRLF1 YVLDHLIVV transitional T cells between effector and memory populations PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*02:01 B2M MHCI -3386 chip0420_213617 5.87 12.28 Chip1 T1D_2 T1D _ 6746 3194 PGT-178 PGT 0.83 1480 PGT-178 125 3069 7 HomoSapiens PGT LLAGIGTVPI transitional T cells between effector and memory populations PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*02:01 B2M MHCI -3387 chip0420_828544 13.42 7.51 Chip1 T1D_1 T1D TGTGCCAGCAGTGCCGGGACAGTTGCACCCGGGGAGCTGTTTTTT CASSAGTVAPGELFF TRBV2*01 TRBJ2-2*01 37.0 2183.0 _CASSAGTVAPGELFF 21 1991 EBV-BLMF1 EBV 0.8 2531 NEG 109 1882 10 EBV BLMF1 GLCTLVAML effector memory T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*02:01 B2M MHCI -3388 chip0420_71223 -3.23 8.35 Chip1 T1D_1 T1D _ 6746 7016 PGT-178 PGT 0.81 1480 PGT-178 118 6898 2 HomoSapiens PGT LLAGIGTVPI Naive T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*02:01 B2M MHCI -3389 chip0420_10858 5.73 8.92 Chip1 T1D_1 T1D TGTGCTACGGAAGGGGCTTCAGGATACAGCACCCTCACCTTT CATEGASGYSTLTF TRAV17*01 TRAJ11*01 36.0 2219.0 TGTGCCAGCAGTGTGCAGGGAGGTAACTATGGCTACACCTTC CASSVQGGNYGYTF TRBV6-1*01 TRBJ1-2*01 20.0 1083.0 CATEGASGYSTLTF_CASSVQGGNYGYTF 1 4508 EBV-LMP2-FLY EBV 1.0 355 EBV-LMP2-FLY 106 4402 6 EBV LMP2 FLYALALLL central memory T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*02:01 B2M MHCI -3390 chip0420_875844 11.49 7.72 Chip1 T1D_1 T1D TGTGCTGTGGAACCTGCTTACTACCTCAGGAACCTCCTATTTCATCTTT CAVEPAYY??cSGTSYFIF TRAV2*01 TRAJ40*01 59.0 2128.0 CAVEPAYY??cSGTSYFIF_ 1 3943 EBV-LMP2-FLY EBV 0.79 355 EBV-LMP2-FLY 127 3816 10 EBV LMP2 FLYALALLL effector memory T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*02:01 B2M MHCI -3391 chip0420_363019 -1.93 10.03 Chip1 T1D_1 T1D TGTGCCAGCAGGGGACTAGCGGCAGCCAAAAACATTCAGTACTTC CASRGLAAAKNIQYF TRBV12-3*01,TRBV12-4*01 TRBJ2-4*01 41.0 2049.0 _CASRGLAAAKNIQYF 1 4645 PGT-178 PGT 0.73 1480 PGT-178 126 4519 3 HomoSapiens PGT LLAGIGTVPI Naive T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*02:01 B2M MHCI -3392 chip0420_647064 15.23 8.86 Chip1 T1D_2 T1D TGTGCCAGCTGTGGGGGGGCGGTCGCGCCGAGTGAGCAGTTCTTC CASCGGAVAPSEQFF TRBV2*01 TRBJ2-1*01 71.0 3490.0 _CASCGGAVAPSEQFF 1 2879 EBV-BLMF1 EBV 0.86 2531 NEG 119 2760 12 EBV BLMF1 GLCTLVAML effector T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*02:01 B2M MHCI -3393 chip0420_563518 -1.39 6.88 Chip1 T1D_3 T1D TGTGCTCTGAGTACGATCAAAGCTGCAGGCAACAAGCTAACTTTT CALSTIKAAGNKLTF TRAV19*01 TRAJ17*01 32.0 2053.0 CALSTIKAAGNKLTF_ 1 6197 NP140-148 FLU 0.76 102 NEG 123 6074 3 InfluenzaA NP HSNLNDATY Naive T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*01:01 B2M MHCI -3394 chip0420_79332 5.21 9.55 Chip1 T1D_1 T1D TGTGCCAGCAGCCCGGGGGACGCCCGTGGCGAGCAGTACTTC CASSPGDARGEQYF TRBV5-6*01 TRBJ2-7*01 35.0 2490.0 _CASSPGDARGEQYF 12 3258 EBV-LMP1-1 EBV 0.87 237 EBV-LMP1-1 114 3144 6 EBV LMP1 YLLEMLWRL central memory T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*02:01 B2M MHCI -3395 chip0420_341910 14.46 7.98 Chip1 T1D_2 T1D TGTGTGGTGAACGGTAGGGATAGCAGCTATAAATTGATCTTC CVVNGRDSSYKLIF TRAV12-1*01 TRAJ12*01 2.0 109.0 TGTGCCAGCAGCTCGGGACTAGTCGCCCCCGGGGAGCTGTTTTTT CASSSGLVAPGELFF TRBV2*01 TRBJ2-2*01 24.0 1446.0 CVVNGRDSSYKLIF_CASSSGLVAPGELFF 98 3444 EBV-BLMF1 EBV 0.56 2531 NEG 117 3327 10 EBV BLMF1 GLCTLVAML effector memory T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*02:01 B2M MHCI -3396 chip0420_134231 11.18 11.28 Chip1 T1D_1 T1D _ 6746 3462 EBV-BLMF1 EBV 0.71 2531 NEG 121 3341 9 EBV BLMF1 GLCTLVAML effector memory T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*02:01 B2M MHCI -3397 chip0420_731721 14.17 8.52 Chip1 T1D_1 T1D TGCGGCACAGAGGAACCTAACGACTACAAGCTCAGCTTT CGTEEPNDYKLSF TRAV30*01 TRAJ20*01 55.0 4125.0 TGTGCCAGCAGCACGGGACAGCTATCGAACACCGGGGAGCTGTTTTTT CASSTGQLSNTGELFF TRBV9*01 TRBJ2-2*01 7.0 223.0 CGTEEPNDYKLSF_CASSTGQLSNTGELFF 18 1873 EBV-BLMF1 EBV 0.82 2531 NEG 120 1753 10 EBV BLMF1 GLCTLVAML effector memory T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*02:01 B2M MHCI -3398 chip0420_1123 11.46 12.44 Chip1 T1D_2 T1D _ 6746 1921 EBV-BRLF1 EBV 0.87 1264 EBV-BRLF1 109 1812 11 EBV BRLF1 YVLDHLIVV effector T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*02:01 B2M MHCI -3399 chip0420_834638 6.04 12.76 Chip1 T1D_1 T1D TGTGTGGTGAACGGCAGGGATAGCAGCTATAGATTGATCTTC CVVNGRDSSYRLIF TRAV12-1*01 TRAJ12*01 12.0 427.0 CVVNGRDSSYRLIF_ 1 3864 HCV-K1S HCV 0.84 10 HCV-K1S 112 3752 7 HCV POL SLVALGINAV transitional T cells between effector and memory populations PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*02:01 B2M MHCI -3400 chip0420_532814 14.65 8.93 Chip1 T1D_2 T1D TGCAGCGTGGGGACAGGGGGAACTAATGAAAAACTGTTTTTT CSVGTGGTNEKLFF TRBV29-1*01 TRBJ1-4*01 24.0 1126.0 _CSVGTGGTNEKLFF 638 2282 EBV-BLMF1 EBV 0.44 2531 NEG 124 2158 12 EBV BLMF1 GLCTLVAML effector T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*02:01 B2M MHCI -3401 chip0420_863692 15.56 10.45 Chip1 T1D_1 T1D TGTGCCAGCAGCCCAGTTAGCGGGTCAACCTACGAGCAGTACTCC CASSPVSGSTYEQYS TRBV3-1*01 TRBJ2-7*01 27.0 1280.0 _CASSPVSGSTYEQYS 1 2146 EBV-BLMF1 EBV 0.81 2531 EBV-BLMF1 132 2014 12 EBV BLMF1 GLCTLVAML effector T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*02:01 B2M MHCI -3402 chip0420_729553 -4.44 10.17 Chip1 T1D_1 T1D _ 6746 4358 PGT-178 PGT 0.84 1480 PGT-178 116 4242 2 HomoSapiens PGT LLAGIGTVPI Naive T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*02:01 B2M MHCI -3403 chip0420_305413 9.23 12.1 Chip1 healthy_1 healthy TGCAGTGCTTCTCGCGCTCTTGATCAGCCCCAGCATTTT CSASRALDQPQHF TRBV20-1*01 TRBJ1-5*01 43.0 2002.0 _CSASRALDQPQHF 2 2606 EBV-BRLF1 EBV 0.95 1264 EBV-BRLF1 120 2486 7 EBV BRLF1 YVLDHLIVV transitional T cells between effector and memory populations PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*02:01 B2M MHCI -3404 chip0420_514422 6.52 12.25 Chip1 T1D_1 T1D TGTGCCAGCAGTTTCTTGGAAGGCACAGATACGCAGTATTTT CASSFLEGTDTQYF TRBV28*01 TRBJ2-3*01 17.0 982.0 _CASSFLEGTDTQYF 1 4558 HCV-35-44 HCV 0.62 13 NEG 126 4432 7 HCV POL YLLPRRGPRL transitional T cells between effector and memory populations PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*02:01 B2M MHCI -3405 chip0420_867267 6.09 12.33 Chip1 healthy_1 healthy TGTGCCAGTAGTGGGCGGAGCACGGATACGCAGTATTTT CASSGRSTDTQYF TRBV19*01 TRBJ2-3*01 21.0 962.0 _CASSGRSTDTQYF 5 5420 M1 FLU 1.0 1250 NEG 106 5314 7 InfluenzaA M1 GILGFVFTL transitional T cells between effector and memory populations PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*02:01 B2M MHCI -3406 chip0420_480413 6.05 13.91 Chip1 T1D_1 T1D TGTGCCAGTAGTATAAATGGGGGCCGGAGGGATGGCTACACCTTC CASSINGGRRDGYTF TRBV19*01 TRBJ1-2*01 53.0 2102.0 _CASSINGGRRDGYTF 32 4835 M1 FLU 0.94 1250 M1 154 4681 7 InfluenzaA M1 GILGFVFTL transitional T cells between effector and memory populations PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*02:01 B2M MHCI -3407 chip0420_16025 11.28 11.61 Chip1 T1D_1 T1D _ 6746 2354 EBV-BLMF1 EBV 0.9 2531 NEG 113 2241 9 EBV BLMF1 GLCTLVAML effector memory T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*02:01 B2M MHCI -3408 chip0420_850652 -2.65 7.93 Chip1 T1D_1 T1D _ 6746 6290 PGT-178 PGT 0.84 1480 PGT-178 127 6163 2 HomoSapiens PGT LLAGIGTVPI Naive T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*02:01 B2M MHCI -3409 chip0420_662414 8.84 8.72 Chip1 T1D_1 T1D TGTGTCGAGCACGGGGAGGCTCGCACCTCTCACTTGATCTTC CVEHGEARTSHLIF TRAV12-1*01 TRAJ12*01 5.0 438.0 TGTGCCAGCAGTGAAGGGCGAGTCTCTCCGGGCGAAGCTTTCTTT CASSEGRVSPGEAFF TRBV2*01 TRBJ1-1*01 51.0 3024.0 CVEHGEARTSHLIF_CASSEGRVSPGEAFF 1 3457 EBV-BLMF1 EBV 0.55 2531 NEG 129 3328 8 EBV BLMF1 GLCTLVAML effector memory T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*02:01 B2M MHCI -3410 chip0420_634764 -1.77 9.07 Chip1 T1D_1 T1D _ 6746 5305 GP160-311-320 HIV 0.77 109 GP160-311-320 115 5190 3 HIV-1 GP160 RGPGRAFVTI Naive T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*02:01 B2M MHCI -3411 chip0420_324978 11.85 12.26 Chip1 T1D_1 T1D TGCAGCGTTGGGACGGGGGGGACTAATGAAAAACTGTTTTTT CSVGTGGTNEKLFF TRBV29-1*01 TRBJ1-4*01 97.0 4408.0 _CSVGTGGTNEKLFF 638 2110 EBV-BLMF1 EBV 0.6 2531 NEG 120 1990 11 EBV BLMF1 GLCTLVAML effector T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*02:01 B2M MHCI -3412 chip0420_296194 15.92 12.14 Chip1 T1D_1 T1D _ 6746 1844 EBV-BLMF1 EBV 0.43 2531 NEG 109 1735 12 EBV BLMF1 GLCTLVAML effector T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*02:01 B2M MHCI -3413 chip0420_143744 11.03 7.68 Chip1 T1D_1 T1D TGTGTGGTGAACGGGGAGGATAGCAGCTATAAATTGATCTTC CVVNGEDSSYKLIF TRAV12-1*01 TRAJ12*01 17.0 672.0 TGTGCCAGCAGTGAAGGGCGAGTCTCTCCGGGCGAAGCTTTCTTT CASSEGRVSPGEAFF TRBV2*01 TRBJ1-1*01 21.0 849.0 CVVNGEDSSYKLIF_CASSEGRVSPGEAFF 9 4365 EBV-BLMF1 EBV 0.53 2531 NEG 158 4207 10 EBV BLMF1 GLCTLVAML effector memory T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*02:01 B2M MHCI -3414 chip0420_701080 11.89 10.66 Chip1 T1D_2 T1D TGCAGCGTGGGGACAGGGGGAACTAATGAAAAACTGTTTTTT CSVGTGGTNEKLFF TRBV29-1*01 TRBJ1-4*01 79.0 4436.0 _CSVGTGGTNEKLFF 638 3615 EBV-BLMF1 EBV 0.6 2531 NEG 130 3485 9 EBV BLMF1 GLCTLVAML effector memory T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*02:01 B2M MHCI -3415 chip0420_692534 13.04 10.61 Chip1 T1D_1 T1D TGTGCCGTGGACCCATGAGGTAACCAGTTCTCTTTT CAVDP*GNQFSF TRAV39*01 TRAJ49*01 29.0 2189.0 TGTGCCACCCAACAGGGGAGGGACAGTCAGCCCCAGCATTTT CATQQGRDSQPQHF TRBV28*01 TRBJ1-5*01 41.0 2212.0 CAVDP*GNQFSF_CATQQGRDSQPQHF 1 3679 EBV-BLMF1 EBV 1.0 2531 NEG 109 3570 9 EBV BLMF1 GLCTLVAML effector memory T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*02:01 B2M MHCI -3416 chip0420_466882 10.27 10.99 Chip1 T1D_2 T1D TGCAGCGTGGGGACAGGGGGAACTAATGAAAAACTGTTTTTT CSVGTGGTNEKLFF TRBV29-1*01 TRBJ1-4*01 7.0 132.0 _CSVGTGGTNEKLFF 638 3619 EBV-BLMF1 EBV 0.88 2531 NEG 125 3494 9 EBV BLMF1 GLCTLVAML effector memory T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*02:01 B2M MHCI -3417 chip0420_111524 11.72 8.14 Chip1 T1D_1 T1D TGTGCCAGCAGTTCCGGAGGGAACGTGGATACGCAGTATTTT CASSSGGNVDTQYF TRBV7-3*01 TRBJ2-3*01 4.0 236.0 _CASSSGGNVDTQYF 47 3400 EBV-BLMF1 EBV 0.75 2531 NEG 122 3278 10 EBV BLMF1 GLCTLVAML effector memory T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*02:01 B2M MHCI -3418 chip0420_859055 13.17 7.7 Chip1 T1D_1 T1D TGTGCCAGCAGCCCAGTTAGCGGGTCAACCTACGAGCAGTACTTC CASSPVSGSTYEQYF TRBV3-1*01 TRBJ2-7*01 19.0 902.0 _CASSPVSGSTYEQYF 80 2547 EBV-BLMF1 EBV 0.73 2531 NEG 147 2400 10 EBV BLMF1 GLCTLVAML effector memory T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*02:01 B2M MHCI -3419 chip0420_778466 9.18 8.13 Chip1 T1D_1 T1D TGTGCCGTGAACGGGGGTGGCTACAATAAGCTGATTTTT CAVNGGGYNKLIF TRAV12-2*01 TRAJ4*01 34.0 2058.0 CAVNGGGYNKLIF_ 1 4001 EBV-BLMF1 EBV 0.58 2531 NEG 138 3863 8 EBV BLMF1 GLCTLVAML effector memory T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*02:01 B2M MHCI -3420 chip0420_807697 -4.19 8.69 Chip1 T1D_1 T1D TGTGCCGTCATGAATTATGGAGGAAGCCAAGGAAATCTCATCTTT CAVMNYGGSQGNLIF TRAV12-2*01 TRAJ42*01 63.0 2104.0 TGTGCCAGCAGTGACAGCTACACTGAAGCTTTCTTT CASSDSYTEAFF TRBV28*01 TRBJ1-1*01 39.0 1616.0 CAVMNYGGSQGNLIF_CASSDSYTEAFF 1 5562 ROTA-VP3 ROTA 0.83 41 ROTA-VP3 120 5442 2 RotavirusA VP3 YLLPGWKL Naive T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*02:01 B2M MHCI -3421 chip0420_793797 11.4 7.86 Chip1 T1D_1 T1D TGTGCTCTCTATAACACCGACAAGCTCATCTTT CALYNTDKLIF TRAV9-2*01 TRAJ34*01 32.0 2220.0 TGTGCCAGCAGCCCAGTTAGCGGGTCAACCTACGAGCAGTACTTC CASSPVSGSTYEQYF TRBV3-1*01 TRBJ2-7*01 15.0 863.0 CALYNTDKLIF_CASSPVSGSTYEQYF 15 4625 EBV-BLMF1 EBV 0.91 2531 EBV-BLMF1 143 4482 10 EBV BLMF1 GLCTLVAML effector memory T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*02:01 B2M MHCI -3422 chip0420_382462 5.94 12.62 Chip1 healthy_1 healthy TGCGCCAGCAGCGCGGGACAGGGACTTCCCTACGAGCAGTACTTC CASSAGQGLPYEQYF TRBV5-1*01 TRBJ2-7*01 28.0 1700.0 _CASSAGQGLPYEQYF 9 4692 M1 FLU 0.83 1250 M1 109 4583 7 InfluenzaA M1 GILGFVFTL transitional T cells between effector and memory populations PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*02:01 B2M MHCI -3423 chip0420_766789 15.11 9.78 Chip1 T1D_1 T1D TGTGCTGTGGTCTCAAATTCCGGGTATGCACTCAACTTC CAVVSNSGYALNF TRAV12-2*01 TRAJ41*01 6.0 474.0 TGTGCCAGCAGTTCCGGAGGGAACGTGGATACGCAGTATTTT CASSSGGNVDTQYF TRBV7-3*01 TRBJ2-3*01 48.0 2619.0 CAVVSNSGYALNF_CASSSGGNVDTQYF 8 2981 EBV-BLMF1 EBV 0.73 2531 NEG 122 2859 12 EBV BLMF1 GLCTLVAML effector T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*02:01 B2M MHCI -3424 chip0420_883671 12.63 11.09 Chip1 T1D_2 T1D TGTGCCAGCAGCTCGGGACTAGTCGCCCCCGGGGAGCTGTTTTTT CASSSGLVAPGELFF TRBV2*01 TRBJ2-2*01 18.0 1847.0 _CASSSGLVAPGELFF 133 2547 EBV-BLMF1 EBV 0.5 2531 NEG 112 2435 9 EBV BLMF1 GLCTLVAML effector memory T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*02:01 B2M MHCI -3425 chip0420_565388 12.82 12.62 Chip1 T1D_1 T1D _ 6746 1505 EBV-BLMF1 EBV 1.0 2531 NEG 126 1379 11 EBV BLMF1 GLCTLVAML effector T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*02:01 B2M MHCI -3426 chip0420_751528 5.05 10.44 Chip1 T1D_2 T1D TGCAGTGCTGTGACAGGGGGAGGTGGCACTGAAGCTTTCTTT CSAVTGGGGTEAFF TRBV20-1*01 TRBJ1-1*01 35.0 2022.0 _CSAVTGGGGTEAFF 4 6556 MART1-ALA MART1 0.56 269 NEG 104 6452 6 HomoSapiens MART1 ALAGIGILTV central memory T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*02:01 B2M MHCI -3427 chip0420_609217 6.51 12.95 Chip1 healthy_1 healthy TGTGCCAGTAGTATTTACGGAAGCTACGAGCAGTACTTC CASSIYGSYEQYF TRBV19*01 TRBJ2-7*01 17.0 1133.0 _CASSIYGSYEQYF 1 4179 M1 FLU 0.78 1250 NEG 120 4059 7 InfluenzaA M1 GILGFVFTL transitional T cells between effector and memory populations PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*02:01 B2M MHCI -3428 chip0420_781344 -3.09 9.1 Chip1 T1D_1 T1D _ 6746 4780 PA-46-54 FLU 0.62 18 NEG 95 4685 2 InfluenzaA PA FMYSDFHFI Naive T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*02:01 B2M MHCI -3429 chip0420_735863 14.32 10.16 Chip1 T1D_1 T1D _ 6746 3299 EBV-BLMF1 EBV 0.83 2531 EBV-BLMF1 112 3187 12 EBV BLMF1 GLCTLVAML effector T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*02:01 B2M MHCI -3430 chip0420_243430 6.24 12.42 Chip1 T1D_1 T1D _ 6746 6533 M1 FLU 0.88 1250 M1 128 6405 7 InfluenzaA M1 GILGFVFTL transitional T cells between effector and memory populations PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*02:01 B2M MHCI -3431 chip0420_482687 11.88 12.19 Chip1 T1D_1 T1D _ 6746 2275 EBV-BLMF1 EBV 0.64 2531 EBV-BLMF1 110 2165 11 EBV BLMF1 GLCTLVAML effector T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*02:01 B2M MHCI -3432 chip0420_445892 15.6 11.53 Chip1 T1D_2 T1D TGTGCAGCAAGCGGAGGAAGCCAAGGAAATCTCATCTTT CAASGGSQGNLIF TRAV29/DV5*01 TRAJ42*01 2.0 158.0 TGCAGCTCGCAGGAGGGCGGCTATGGCTACACCTTC CSSQEGGYGYTF TRBV29-1*01 TRBJ1-2*01 27.0 1695.0 CAASGGSQGNLIF_CSSQEGGYGYTF 1 2058 EBV-BLMF1 EBV 0.86 2531 NEG 132 1926 12 EBV BLMF1 GLCTLVAML effector T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*02:01 B2M MHCI -3433 chip0420_118552 -2.92 10.83 Chip1 healthy_2 healthy TGTGCCAGCAGTGAAGGGATGATAAGCAATCAGCCCCAGCATTTT CASSEGMISNQPQHF TRBV2*01 TRBJ1-5*01 16.0 735.0 _CASSEGMISNQPQHF 1 4115 PGT-178 PGT 0.49 1480 PGT-178 117 3998 4 HomoSapiens PGT LLAGIGTVPI Naive T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*02:01 B2M MHCI -3434 chip0420_526357 9.83 11.07 Chip1 T1D_2 T1D TGTGCCAGCAGCTCGGGACTAGTCGCCCCCGGGGAGCTGTTTTTT CASSSGLVAPGELFF TRBV2*01 TRBJ2-2*01 32.0 1895.0 _CASSSGLVAPGELFF 133 4601 EBV-BLMF1 EBV 0.62 2531 NEG 128 4473 9 EBV BLMF1 GLCTLVAML effector memory T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*02:01 B2M MHCI -3435 chip0420_491686 -2.33 13.64 Chip1 T1D_1 T1D TGTGCCAGTAGTATAAACCATCGTGGAATCATCGAGCAGTTCTTC CASSINHRGIIEQFF TRBV19*01 TRBJ2-1*01 4.0 140.0 _CASSINHRGIIEQFF 1 2992 PGT-178 PGT 0.81 1480 PGT-178 123 2869 1 HomoSapiens PGT LLAGIGTVPI Naive T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*02:01 B2M MHCI -3436 chip0420_401178 14.72 10.8 Chip1 T1D_2 T1D TGTGCCAGCAGCTCGGGACTAGTCGCCCCCGGGGAGCTGTTTTTT CASSSGLVAPGELFF TRBV2*01 TRBJ2-2*01 20.0 1346.0 _CASSSGLVAPGELFF 133 1969 EBV-BLMF1 EBV 0.57 2531 NEG 134 1835 12 EBV BLMF1 GLCTLVAML effector T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*02:01 B2M MHCI -3437 chip0420_839317 -1.93 9.97 Chip1 T1D_1 T1D TGTGCCGGATATAGTGGAGGTAGCAACTATAAACTGACCTTT CAGYSGGSNYKLTF TRAV39*01 TRAJ53*01 41.0 2049.0 CAGYSGGSNYKLTF_ 1 5454 CVB3-P3A CVB 0.7 77 NEG 131 5323 3 CoxsackievirusB P3A GIIYIIYKL Naive T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*02:01 B2M MHCI -3438 chip0420_794051 4.82 11.11 Chip1 healthy_2 healthy _ 6746 2931 PGT-178 PGT 0.86 1480 NEG 118 2813 6 HomoSapiens PGT LLAGIGTVPI central memory T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*02:01 B2M MHCI -3439 chip0420_514809 8.09 10.88 Chip1 healthy_1 healthy _ 6746 3515 EBV-BRLF1 EBV 0.67 1264 EBV-BRLF1 133 3382 7 EBV BRLF1 YVLDHLIVV transitional T cells between effector and memory populations PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*02:01 B2M MHCI -3440 chip0420_188664 7.28 13.96 Chip1 T1D_1 T1D _ 6746 2395 M1 FLU 0.64 1250 NEG 99 2296 7 InfluenzaA M1 GILGFVFTL transitional T cells between effector and memory populations PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*02:01 B2M MHCI -3441 chip0420_675784 10.11 9.75 Chip1 T1D_1 T1D TGTGCCGTGGACCCATGGGGTAACCAGTTCTATTTT CAVDPWGNQFYF TRAV39*01 TRAJ49*01 32.0 2233.0 TGTGCCACCCAACAGGGGAGGGACAGTCAGCCCCAGCATTTT CATQQGRDSQPQHF TRBV28*01 TRBJ1-5*01 8.0 307.0 CAVDPWGNQFYF_CATQQGRDSQPQHF 16 4186 EBV-BLMF1 EBV 0.82 2531 NEG 118 4068 8 EBV BLMF1 GLCTLVAML effector memory T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*02:01 B2M MHCI -3442 chip0420_622169 -3.99 10.24 Chip1 T1D_1 T1D TGTGCCAGCAGCTGGACCGGGACAGACGACACTGAAGCTTTCTTT CASSWTGTDDTEAFF TRBV13*01 TRBJ1-1*01 21.0 841.0 _CASSWTGTDDTEAFF 1 4470 NEF-136-145 FLU 0.43 9 NEG 125 4345 2 InfluenzaA NEF PLTFGWCYKL Naive T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*02:01 B2M MHCI -3443 chip0420_473231 9.13 11.06 Chip1 healthy_1 healthy _ 6746 3219 M1 FLU 0.7 1250 M1 102 3117 9 InfluenzaA M1 GILGFVFTL effector memory T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*02:01 B2M MHCI -3444 chip0420_291972 9.61 9.03 Chip1 T1D_1 T1D _ 6746 3727 EBV-BRLF1 EBV 0.89 1264 NEG 114 3613 8 EBV BRLF1 YVLDHLIVV effector memory T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*02:01 B2M MHCI -3445 chip0420_138547 6.35 11.78 Chip1 T1D_1 T1D TGTGCCAGCAGTTACTTGGGGGTAGAAGGCTACACCTTC CASSYLGVEGYTF TRBV6-5*01 TRBJ1-2*01 3.0 31.0 _CASSYLGVEGYTF 1 5477 M1 FLU 0.91 1250 NEG 121 5356 7 InfluenzaA M1 GILGFVFTL transitional T cells between effector and memory populations PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*02:01 B2M MHCI -3446 chip0420_571103 5.99 12.56 Chip1 T1D_1 T1D _ 6746 4329 M1 FLU 0.94 1250 M1 124 4205 7 InfluenzaA M1 GILGFVFTL transitional T cells between effector and memory populations PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*02:01 B2M MHCI -3447 chip0420_751006 8.35 11.37 Chip1 T1D_2 T1D _ 6746 3842 EBV-LMP2-FLY EBV 0.87 355 EBV-LMP2-FLY 117 3725 7 EBV LMP2 FLYALALLL transitional T cells between effector and memory populations PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*02:01 B2M MHCI -3448 chip0420_545135 11.04 11.08 Chip1 T1D_1 T1D TGTGCCACCCAACAGGGGCGGGACAGTCAGCCCCAGCATTTT CATQQGRDSQPQHF TRBV28*01 TRBJ1-5*01 23.0 1053.0 _CATQQGRDSQPQHF 52 4520 EBV-BLMF1 EBV 0.88 2531 NEG 119 4401 9 EBV BLMF1 GLCTLVAML effector memory T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*02:01 B2M MHCI -3449 chip0420_127817 13.84 7.98 Chip1 T1D_2 T1D TGCAGCGTGGGGACAGGAGGAACTAATGAAAAACTGTTTTTT CSVGTGGTNEKLFF TRBV29-1*01 TRBJ1-4*01 13.0 560.0 _CSVGTGGTNEKLFF 638 2834 EBV-BLMF1 EBV 0.83 2531 NEG 104 2730 10 EBV BLMF1 GLCTLVAML effector memory T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*02:01 B2M MHCI -3450 chip0420_34704 -0.39 8.84 Chip1 T1D_1 T1D TGTGCAATGAGCATATCTAACTTTGGAAATGAGAAATTAACCTTT CAMSISNFGNEKLTF TRAV12-3*01 TRAJ48*01 1.0 15.0 TGTGCCAGCAGCGACACCGGGACTAGCGGGTTTGAGGCCAAAAACATTCAGTACTTC CASSDTGTSGFEAKNIQYF TRBV9*01 TRBJ2-4*01 98.0 2031.0 CAMSISNFGNEKLTF_CASSDTGTSGFEAKNIQYF 1 7280 PGT-178 PGT 0.92 1480 PGT-178 110 7170 4 HomoSapiens PGT LLAGIGTVPI Naive T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*02:01 B2M MHCI -3451 chip0420_614105 12.03 7.96 Chip1 healthy_2 healthy TGTGCCAGCAGCTTCCGTGTGGGAGAGGGCACCGGGGAGCTGTTTTTT CASSFRVGEGTGELFF TRBV7-6*01 TRBJ2-2*01 25.0 1390.0 _CASSFRVGEGTGELFF 1 2514 BZLF1-190-197 EBV 0.65 2156 BZLF1-190-197 96 2418 10 EBV BZLF1 RAKFKQLL effector memory T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-B*08:01 B2M MHCI -3452 chip0420_572682 15.26 10.17 Chip1 T1D_1 T1D TGTGCCAGCAGTTCGGGACAGGTACTTCCCAATGAGCAGTTCTTC CASSSGQVLPNEQFF TRBV2*01 TRBJ2-1*01 36.0 1663.0 _CASSSGQVLPNEQFF 61 3870 EBV-BLMF1 EBV 0.75 2531 NEG 108 3762 12 EBV BLMF1 GLCTLVAML effector T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*02:01 B2M MHCI -3453 chip0420_719043 -3.6 13.52 Chip1 T1D_1 T1D TGTGCCAGCAGCACTTCGACAGGGGGTTTAGCTGAAGCTTTCTTT CASSTSTGGLAEAFF TRBV11-1*01 TRBJ1-1*01 30.0 1289.0 _CASSTSTGGLAEAFF 1 3621 PGT-178 PGT 0.88 1480 PGT-178 114 3507 1 HomoSapiens PGT LLAGIGTVPI Naive T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*02:01 B2M MHCI -3454 chip0420_742819 5.47 11.82 Chip1 T1D_2 T1D TGTGCCGCCACCTTCTATACCGGCACTGCCAGTAAACTCACCTTT CAATFYTGTASKLTF TRAV8-1*01 TRAJ44*01 65.0 4168.0 CAATFYTGTASKLTF_ 1 5007 EBV-LMP1-1 EBV 0.83 237 EBV-LMP1-1 120 4887 7 EBV LMP1 YLLEMLWRL transitional T cells between effector and memory populations PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*02:01 B2M MHCI -3455 chip0420_534503 -3.57 8.83 Chip1 T1D_1 T1D TGCATCCTGAGAGACGGTCAGGGAGCCCAGAAGCTGGTATTT CILRDGQGAQKLVF TRAV26-2*01 TRAJ54*01 2.0 364.0 CILRDGQGAQKLVF_ 1 5994 PGT-178 PGT 0.76 1480 PGT-178 128 5866 2 HomoSapiens PGT LLAGIGTVPI Naive T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*02:01 B2M MHCI -3456 chip0420_15606 6.56 11.74 Chip1 healthy_1 healthy _ 6746 5546 M1 FLU 0.73 1250 NEG 107 5439 7 InfluenzaA M1 GILGFVFTL transitional T cells between effector and memory populations PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*02:01 B2M MHCI -3457 chip0420_555526 5.98 12.56 Chip1 T1D_1 T1D TGTGCCAGTAGTATTTATGGAGGGAGCGGTGAAGCTTTCTTT CASSIYGGSGEAFF TRBV19*01 TRBJ1-1*01 28.0 1390.0 _CASSIYGGSGEAFF 4 5768 M1 FLU 0.42 1250 NEG 99 5669 7 InfluenzaA M1 GILGFVFTL transitional T cells between effector and memory populations PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*02:01 B2M MHCI -3458 chip0420_120612 9.64 9.66 Chip1 T1D_1 T1D _ 6746 5044 EBV-BRLF1 EBV 0.92 1264 EBV-BRLF1 124 4920 9 EBV BRLF1 YVLDHLIVV effector memory T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*02:01 B2M MHCI -3459 chip0420_756128 -2.64 10.79 Chip1 T1D_2 T1D _ 6746 3688 MART1-ALA MART1 0.59 269 MART1-ALA 112 3576 4 HomoSapiens MART1 ALAGIGILTV Naive T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*02:01 B2M MHCI -3460 chip0420_725379 6.15 13.47 Chip1 T1D_1 T1D TGTGCCAGCAGTTACCGGGACAAGAGCGCTGGAAACACCATATATTTT CASSYRDKSAGNTIYF TRBV28*01 TRBJ1-3*01 26.0 993.0 _CASSYRDKSAGNTIYF 2 3414 M1 FLU 0.84 1250 M1 123 3291 7 InfluenzaA M1 GILGFVFTL transitional T cells between effector and memory populations PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*02:01 B2M MHCI -3461 chip0420_778173 -2.02 9.35 Chip1 T1D_1 T1D TGTGCTGTGAGTGATCGCGGGGGATGGGGAGCCCAGAAGCTGGTATTT CAVSDRGGWGAQKLVF TRAV8-4*01 TRAJ54*01 1.0 53.0 CAVSDRGGWGAQKLVF_ 1 6574 GP160-311-320 HIV 0.73 109 GP160-311-320 114 6460 3 HIV-1 GP160 RGPGRAFVTI Naive T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*02:01 B2M MHCI -3462 chip0420_665822 -2.51 9.21 Chip1 T1D_1 T1D TGTGCCAGCACCGAATACACCGGGGAGCTGTTTTTT CASTEYTGELFF TRBV28*01 TRBJ2-2*01 25.0 2046.0 _CASTEYTGELFF 1 5336 PGT-178 PGT 0.69 1480 PGT-178 120 5216 3 HomoSapiens PGT LLAGIGTVPI Naive T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*02:01 B2M MHCI -3463 chip0420_639897 11.03 12.0 Chip1 T1D_3 T1D _ 6746 2359 BZLF1-190-197 EBV 0.41 2156 BZLF1-190-197 127 2232 9 EBV BZLF1 RAKFKQLL effector memory T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-B*08:01 B2M MHCI -3464 chip0420_517648 11.33 9.51 Chip1 T1D_1 T1D TGTGCCAGCAGCACGGGACAGCTATCGAACACCGGGGAGCTGTTTTTT CASSTGQLSNTGELFF TRBV9*01 TRBJ2-2*01 1.0 88.0 _CASSTGQLSNTGELFF 82 3298 EBV-BLMF1 EBV 0.65 2531 NEG 123 3175 9 EBV BLMF1 GLCTLVAML effector memory T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*02:01 B2M MHCI -3465 chip0420_760288 13.88 13.44 Chip1 T1D_2 T1D TGTGTGGTGATCCATTATAACCAGGGAGGAAAGCTTATCTTC CVVIHYNQGGKLIF TRAV12-1*01 TRAJ23*01 52.0 2695.0 TGTGCCAGCAGCCATGCACTAGAGAACACCGGGGAGCTGTTTTTT CASSHALENTGELFF TRBV3-1*01 TRBJ2-2*01 24.0 1642.0 CVVIHYNQGGKLIF_CASSHALENTGELFF 1 1257 EBV-BRLF1 EBV 0.95 1264 EBV-BRLF1 133 1124 12 EBV BRLF1 YVLDHLIVV effector T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*02:01 B2M MHCI -3466 chip0420_520132 10.88 12.63 Chip1 T1D_2 T1D _ 6746 1914 EBV-BLMF1 EBV 0.5 2531 NEG 124 1790 11 EBV BLMF1 GLCTLVAML effector T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*02:01 B2M MHCI -3467 chip0420_714279 -2.17 9.41 Chip1 T1D_1 T1D _ 6746 6436 PGT-178 PGT 0.77 1480 PGT-178 102 6334 3 HomoSapiens PGT LLAGIGTVPI Naive T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*02:01 B2M MHCI -3468 chip0420_106948 12.69 7.3 Chip1 T1D_2 T1D TGTGCCAGCGGCACTCTAGCGGGGGCTGGGCAGACCCAGTACTTC CASGTLAGAGQTQYF TRBV3-1*01 TRBJ2-5*01 17.0 1332.0 _CASGTLAGAGQTQYF 5 2148 EBV-BRLF1 EBV 0.86 1264 NEG 137 2011 10 EBV BRLF1 YVLDHLIVV effector memory T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*02:01 B2M MHCI -3469 chip0420_169170 11.57 10.45 Chip1 T1D_1 T1D TGTGCCAGCAGTGAAGGGCGAGTCTCTCCGGGCGAAGCTTTCTTT CASSEGRVSPGEAFF TRAV14/DV4*01 TRAJ40*01 2.0 16.0 TGTGCCAGCAGTGAAGGGCGAGTCTCTCCGGGCGAAGCTTTCTTT CASSEGRVSPGEAFF TRBV2*01 TRBJ1-1*01 37.0 3044.0 CASSEGRVSPGEAFF_CASSEGRVSPGEAFF 12 2898 EBV-BLMF1 EBV 0.6 2531 NEG 108 2790 9 EBV BLMF1 GLCTLVAML effector memory T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*02:01 B2M MHCI -3470 chip0420_291457 13.06 8.68 Chip1 T1D_2 T1D _ 6746 2051 EBV-BRLF1 EBV 1.0 1264 NEG 126 1925 10 EBV BRLF1 YVLDHLIVV effector memory T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*02:01 B2M MHCI -3471 chip0420_264360 11.2 9.04 Chip1 T1D_2 T1D TGTGCAGGGCGGCTGTACCGCTTCAACAAATTGTACTTT CAGRLYRFNKLYF TRAV27*01 TRAJ21*01 49.0 2045.0 TGCGCCAGCAGCTTCGCCCCCCGTGACCAATTGACGACTGAAGCTTTCTTT CASSFAPRDQLTTEAFF TRBV5-1*01 TRBJ1-1*01 3.0 59.0 CAGRLYRFNKLYF_CASSFAPRDQLTTEAFF 1 2768 EBV-BLMF1 EBV 0.71 2531 NEG 127 2641 10 EBV BLMF1 GLCTLVAML effector memory T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*02:01 B2M MHCI -3472 chip0420_631953 8.79 9.96 Chip1 T1D_1 T1D TGTGCCAGCAGTTACCCAACGCTGCGGCCTACAATGAGCAGTTCTTC CASSYPTct?AAYNEQFF TRBV6-5*01 TRBJ2-1*01 24.0 726.0 _CASSYPTct?AAYNEQFF 1 5357 EBV-BLMF1 EBV 0.5 2531 NEG 124 5233 8 EBV BLMF1 GLCTLVAML effector memory T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*02:01 B2M MHCI -3473 chip0420_546742 12.88 10.77 Chip1 T1D_2 T1D TGTGCCGTGGGGACGGGAGGTGCTGACGGACTCACCTTT CAVGTGGADGLTF TRAV12-2*01 TRAJ45*01 5.0 294.0 TGTGCCATCAGTGGGTCTCCAGGGGGTAACTATGGCTACACCTTC CAISGSPGGNYGYTF TRBV10-3*01 TRBJ1-2*01 12.0 420.0 CAVGTGGADGLTF_CAISGSPGGNYGYTF 2 2932 PGT-178 PGT 0.45 1480 NEG 111 2821 9 HomoSapiens PGT LLAGIGTVPI effector memory T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*02:01 B2M MHCI -3474 chip0420_495391 13.91 10.27 Chip1 T1D_2 T1D TGCGCCAGCAGAGCGGGAGCCGGGGATACGCAGTATTTT CASRAGAGDTQYF TRBV10-2*01 TRBJ2-3*01 23.0 1153.0 _CASRAGAGDTQYF 59 2211 EBV-BLMF1 EBV 0.57 2531 NEG 129 2082 12 EBV BLMF1 GLCTLVAML effector T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*02:01 B2M MHCI -3475 chip0420_750886 11.37 10.89 Chip1 T1D_1 T1D _ 6746 2833 EBV-BLMF1 EBV 0.79 2531 EBV-BLMF1 116 2717 9 EBV BLMF1 GLCTLVAML effector memory T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*02:01 B2M MHCI -3476 chip0420_624704 6.04 13.91 Chip1 T1D_1 T1D TGTGCCAGTAGTATAAATGGGGGCCGGAGGGATGGCTACACCTTC CASSINGGRRDGYTF TRBV19*01 TRBJ1-2*01 24.0 934.0 _CASSINGGRRDGYTF 32 3747 M1 FLU 0.51 1250 M1 127 3620 7 InfluenzaA M1 GILGFVFTL transitional T cells between effector and memory populations PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*02:01 B2M MHCI -3477 chip0420_420782 14.84 13.07 Chip1 T1D_2 T1D TGTGCCGTGAAAGACACCGACAAGCTCATCTTT CAVKDTDKLIF TRAV8-1*01 TRAJ34*01 26.0 2204.0 CAVKDTDKLIF_ 56 1371 EBV-BRLF1 EBV 0.94 1264 EBV-BRLF1 116 1255 12 EBV BRLF1 YVLDHLIVV effector T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*02:01 B2M MHCI -3478 chip0420_353567 -1.84 8.85 Chip1 healthy_2 healthy _ 6746 4153 NP44-52 FLU 0.86 474 NP44-52 111 4042 3 InfluenzaA NP CTELKLSDY Naive T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*01:01 B2M MHCI -3479 chip0420_716245 -3.01 9.04 Chip1 T1D_1 T1D TGCAGCGTTGAGACTATGCAACTGTCTAACTATGGCTACACCTTC CSVETMQLSNYGYTF TRBV29-1*01 TRBJ1-2*01 274.0 14642.0 _CSVETMQLSNYGYTF 1 5675 GP160-311-320 HIV 0.65 109 NEG 109 5566 2 HIV-1 GP160 RGPGRAFVTI Naive T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*02:01 B2M MHCI -3480 chip0420_523601 11.03 11.8 Chip1 T1D_1 T1D TGTGCCAGCAGCCCAGTTAGCGGGTCAACCTACGAGCAGTACTTC CASSPVSGSTYEQYF TRBV3-1*01 TRBJ2-7*01 23.0 1954.0 _CASSPVSGSTYEQYF 80 3386 EBV-BLMF1 EBV 0.91 2531 NEG 113 3273 9 EBV BLMF1 GLCTLVAML effector memory T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*02:01 B2M MHCI -3481 chip0420_22056 5.39 9.09 Chip1 T1D_2 T1D TGTGCCAGCAGCCGACAGGGAGGGAAGGATGGCTACACCTTC CASSRQGGKDGYTF TRBV6-1*01 TRBJ1-2*01 18.0 830.0 _CASSRQGGKDGYTF 5 5057 EBV-LMP2-FLY EBV 0.94 355 EBV-LMP2-FLY 120 4937 6 EBV LMP2 FLYALALLL central memory T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*02:01 B2M MHCI -3482 chip0420_769457 -4.03 9.05 Chip1 T1D_1 T1D TGTGCCAGCAGTCGCCGGGAGGGGCTACGGACCCAGTACTTC CASSRREGLRTQYF TRBV28*01 TRBJ2-5*01 21.0 1223.0 _CASSRREGLRTQYF 1 5666 PGT-178 PGT 0.76 1480 PGT-178 115 5551 2 HomoSapiens PGT LLAGIGTVPI Naive T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*02:01 B2M MHCI -3483 chip0420_202070 11.88 13.87 Chip1 T1D_2 T1D _ 6746 893 EBV-BRLF1 EBV 0.62 1264 NEG 103 790 11 EBV BRLF1 YVLDHLIVV effector T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*02:01 B2M MHCI -3484 chip0420_831545 10.64 11.24 Chip1 T1D_2 T1D TGTGCCAGCAGCCCCTCGACTAGCGGGAGTGGGGAGACCCAGTACTTC CASSPSTSGSGETQYF TRBV3-1*01 TRBJ2-5*01 37.0 1963.0 _CASSPSTSGSGETQYF 18 2263 EBV-BRLF1 EBV 0.86 1264 EBV-BRLF1 115 2148 9 EBV BRLF1 YVLDHLIVV effector memory T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*02:01 B2M MHCI -3485 chip0420_522265 14.76 10.78 Chip1 T1D_1 T1D _ 6746 2972 EBV-BRLF1 EBV 0.96 1264 EBV-BRLF1 119 2853 12 EBV BRLF1 YVLDHLIVV effector T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*02:01 B2M MHCI -3486 chip0420_766577 15.05 9.4 Chip1 T1D_1 T1D _ 6746 2313 EBV-BLMF1 EBV 0.68 2531 EBV-BLMF1 101 2212 12 EBV BLMF1 GLCTLVAML effector T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*02:01 B2M MHCI -3487 chip0420_90241 12.41 10.27 Chip1 T1D_1 T1D TGTGCCAGCAGTCCGGACCAAACTAGCTCCTACAATGAGCAGTTCTTC CASSPDQTSSYNEQFF TRBV27*01 TRBJ2-1*01 64.0 3922.0 _CASSPDQTSSYNEQFF 47 3865 EBV-BRLF1 EBV 0.96 1264 EBV-BRLF1 107 3758 9 EBV BRLF1 YVLDHLIVV effector memory T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*02:01 B2M MHCI -3488 chip0420_467719 14.09 7.7 Chip1 T1D_1 T1D TGTGCCAGCAGTCCGGACCAAACTAGCTCCTACAATGAGCAGTTCTTC CASSPDQTSSYNEQFF TRBV27*01 TRBJ2-1*01 69.0 2670.0 _CASSPDQTSSYNEQFF 47 2253 EBV-BRLF1 EBV 0.91 1264 NEG 126 2127 10 EBV BRLF1 YVLDHLIVV effector memory T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*02:01 B2M MHCI -3489 chip0420_540796 11.71 10.62 Chip1 T1D_1 T1D TGTGCAGCTTCGAATGCTGGCAACAACCGTAAGCTGATTTGG CAASNAGNNRKLIW TRAV13-1*01 TRAJ38*01 81.0 3806.0 CAASNAGNNRKLIW_ 1 4547 EBV-BLMF1 EBV 1.0 2531 NEG 129 4418 9 EBV BLMF1 GLCTLVAML effector memory T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*02:01 B2M MHCI -3490 chip0420_409966 14.99 8.83 Chip1 T1D_1 T1D TGTGTGGTGAACGTTACCTACAACTTCAACAAATTTTACTTT CVVNVTYNFNKFYF TRAV12-1*01 TRAJ21*01 44.0 2095.0 TGTGTGGTGAACGGGATGGATAGCAGCTATAAATTGATCTTC CVVNGMDSSYKLIF TRAV12-1*01 TRAJ12*01 36.0 2325.0 0.39 TGTGCCAGCAGTGCCGGGACAGTTGCACCCGGGGAGCTGTTTTTT CASSAGTVAPGELFF TRBV2*01 TRBJ2-2*01 18.0 1317.0 CVVNVTYNFNKFYF_CASSAGTVAPGELFF 8 2669 EBV-BLMF1 EBV 0.6 2531 NEG 123 2546 12 EBV BLMF1 GLCTLVAML effector T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*02:01 B2M MHCI -3491 chip0420_380354 11.81 12.13 Chip1 T1D_1 T1D TGCAGCGTCGGCTCCAGGGGAACTAATGAAAAACTGTTTTTT CSVGSRGTNEKLFF TRBV29-1*01 TRBJ1-4*01 64.0 4508.0 _CSVGSRGTNEKLFF 283 1968 EBV-BLMF1 EBV 0.75 2531 NEG 111 1857 10 EBV BLMF1 GLCTLVAML effector memory T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*02:01 B2M MHCI -3492 chip0420_530647 -0.12 3.8 Chip1 T1D_1 T1D TGTGCCGCGGCTCTAATTCAGGGAGCCCAGAAGCTGGTATTT CAAALIQGAQKLVF TRAV39*01 TRAJ54*01 4.0 313.0 CAAALIQGAQKLVF_ 1 5016 HCV-K1Y HCV 0.41 15 NEG 121 4895 5 HCV POL YLVALGINAV natural killer-like T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*02:01 B2M MHCI -3493 chip0420_599777 10.87 11.68 Chip1 T1D_1 T1D _ 6746 2645 EBV-BLMF1 EBV 0.71 2531 NEG 98 2547 9 EBV BLMF1 GLCTLVAML effector memory T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*02:01 B2M MHCI -3494 chip0420_403853 6.94 13.79 Chip1 T1D_1 T1D TGTGCCAGTAGTGTCAGGGCAGGAGAGACCCAGTACTTC CASSVRAGETQYF TRBV19*01 TRBJ2-5*01 23.0 1349.0 _CASSVRAGETQYF 23 3359 M1 FLU 0.91 1250 NEG 117 3242 7 InfluenzaA M1 GILGFVFTL transitional T cells between effector and memory populations PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*02:01 B2M MHCI -3495 chip0420_37361 12.55 7.65 Chip1 T1D_2 T1D TGCAGCGTGGGGACAGGGGGAACTAATGAAAAACTGTTTTTT CSVGTGGTNEKLFF TRBV29-1*01 TRBJ1-4*01 159.0 7995.0 _CSVGTGGTNEKLFF 638 2679 EBV-BLMF1 EBV 0.6 2531 NEG 135 2544 10 EBV BLMF1 GLCTLVAML effector memory T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*02:01 B2M MHCI -3496 chip0420_423463 11.03 12.13 Chip1 T1D_1 T1D TGTGCCAGTAAAGAGGCCGGGGCGCTGTTTTTT CASKEAGALFF TRBV6-1*01 TRBJ2-2*01 12.0 707.0 _CASKEAGALFF 1 2288 EBV-BLMF1 EBV 0.9 2531 EBV-BLMF1 131 2157 9 EBV BLMF1 GLCTLVAML effector memory T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*02:01 B2M MHCI -3497 chip0420_474297 16.2 11.24 Chip1 T1D_1 T1D TGTGCCAGTAGTCCCCACTCGGGTGCGGCGGCCGAGCAGTACTTC CASSPHSGAAAEQYF TRBV19*01 TRBJ2-7*01 7.0 442.0 _CASSPHSGAAAEQYF 1 2462 EBV-BRLF1 EBV 0.6 1264 NEG 135 2327 12 EBV BRLF1 YVLDHLIVV effector T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*02:01 B2M MHCI -3498 chip0420_805657 13.47 13.4 Chip1 T1D_2 T1D TGCAGCGTTGACCAAAGGACAGGGCAAAAGAAGAACTATGGCTACACCTTC CSVDQRTGQKKNYGYTF TRBV29-1*01 TRBJ1-2*01 81.0 4203.0 _CSVDQRTGQKKNYGYTF 40 777 EBV-BLMF1 EBV 0.82 2531 NEG 109 668 11 EBV BLMF1 GLCTLVAML effector T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*02:01 B2M MHCI -3499 chip0420_555163 7.09 12.65 Chip1 T1D_1 T1D _ 6746 3815 POL-334-342 HIV 0.5 12 NEG 116 3699 7 HIV-1 POL VIYQYMDDL transitional T cells between effector and memory populations PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*02:01 B2M MHCI -3500 chip0420_261094 14.49 10.56 Chip1 T1D_2 T1D _ 6746 3162 EBV-BLMF1 EBV 0.4 2531 NEG 121 3041 12 EBV BLMF1 GLCTLVAML effector T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*02:01 B2M MHCI -3501 chip0420_127396 11.8 11.33 Chip1 T1D_1 T1D TGCAGCGTCGGCTCCAGGGGAACTAATGAAAAACTGTTTTTT CSVGSRGTNEKLFF TRBV29-1*01 TRBJ1-4*01 96.0 6055.0 _CSVGSRGTNEKLFF 283 2702 EBV-BLMF1 EBV 0.57 2531 NEG 103 2599 9 EBV BLMF1 GLCTLVAML effector memory T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*02:01 B2M MHCI -3502 chip0420_62148 9.48 9.65 Chip1 T1D_1 T1D TGTGCCAGCAGTTCGGGACAGGTACTTCCCAATGAGCAGTTCTTC CASSSGQVLPNEQFF TRBV2*01 TRBJ2-1*01 19.0 1425.0 _CASSSGQVLPNEQFF 61 3679 EBV-BLMF1 EBV 1.0 2531 NEG 117 3562 8 EBV BLMF1 GLCTLVAML effector memory T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*02:01 B2M MHCI -3503 chip0420_27886 10.32 9.76 Chip1 T1D_1 T1D TGTGCCAGCAGTCCGGCCCGTACTTGCTCCTACAATGAGCAGTTCTTC CASSPARTCSYNEQFF TRBV27*01 TRBJ2-1*01 57.0 1603.0 _CASSPARTCSYNEQFF 1 4430 EBV-BRLF1 EBV 0.95 1264 EBV-BRLF1 118 4312 9 EBV BRLF1 YVLDHLIVV effector memory T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*02:01 B2M MHCI -3504 chip0420_296576 -4.51 8.99 Chip1 healthy_1 healthy TGCAGTGCTTCAGAGCCCGGGACAGGGCTCGGCGAGCAGTACTTC CSASEPGTGLGEQYF TRBV20-1*01 TRBJ2-7*01 70.0 4618.0 _CSASEPGTGLGEQYF 1 4650 PGT-178 PGT 0.61 1480 PGT-178 109 4541 2 HomoSapiens PGT LLAGIGTVPI Naive T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*02:01 B2M MHCI -3505 chip0420_393307 -2.14 10.52 Chip1 T1D_1 T1D _ 6746 5148 MART1-A28L MART1 0.95 84 MART1-A28L 116 5032 3 HomoSapiens MART1 ALGIGILTV Naive T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*02:01 B2M MHCI -3506 chip0420_70853 13.19 7.05 Chip1 T1D_1 T1D TGTGCCAGCAGTCCGGACCAAACTAGCTCCTACAATGAGCAGTTCTTC CASSPDQTSSYNEQFF TRBV27*01 TRBJ2-1*01 30.0 1960.0 _CASSPDQTSSYNEQFF 47 2572 EBV-BRLF1 EBV 0.86 1264 EBV-BRLF1 109 2463 10 EBV BRLF1 YVLDHLIVV effector memory T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*02:01 B2M MHCI -3507 chip0420_545394 13.51 8.24 Chip1 T1D_2 T1D TGCAGCGTGGGGACAGGGGGAACTAATGAAAAACTGTTTTTT CSVGTGGTNEKLFF TRBV29-1*01 TRBJ1-4*01 38.0 2182.0 _CSVGTGGTNEKLFF 638 1590 EBV-BLMF1 EBV 0.8 2531 NEG 111 1479 10 EBV BLMF1 GLCTLVAML effector memory T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*02:01 B2M MHCI -3508 chip0420_7488 8.71 13.98 Chip1 T1D_2 T1D TGCGCCAGCAGAGCGGGAGCCGGGGATACGCAGTATTTT CASRAGAGDTQYF TRBV10-2*01 TRBJ2-3*01 27.0 1434.0 _CASRAGAGDTQYF 59 2166 EBV-BLMF1 EBV 0.8 2531 NEG 135 2031 11 EBV BLMF1 GLCTLVAML effector T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*02:01 B2M MHCI -3509 chip0420_396801 9.41 8.84 Chip1 tet_neg TGCAGCGTTGGGGGCAGCTTCTATGGCTACACCTTC CSVGGSFYGYTF TRBV29-1*01 TRBJ1-2*01 15.0 1358.0 _CSVGGSFYGYTF 42 4551 EBV-BLMF1 EBV 0.73 2531 NEG 145 4406 8 EBV BLMF1 GLCTLVAML effector memory T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*02:01 B2M MHCI -3510 chip0420_292378 6.13 12.41 Chip1 T1D_1 T1D _ 6746 4354 M1 FLU 0.96 1250 M1 110 4244 7 InfluenzaA M1 GILGFVFTL transitional T cells between effector and memory populations PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*02:01 B2M MHCI -3511 chip0420_606624 15.3 12.51 Chip1 T1D_1 T1D _ 6746 1690 EBV-BLMF1 EBV 0.47 2531 NEG 100 1590 12 EBV BLMF1 GLCTLVAML effector T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*02:01 B2M MHCI -3512 chip0420_155877 8.71 10.0 Chip1 T1D_2 T1D TGCGCCAGCAGGCTGGGGGCCGGGGATACGCAGTATTTT CASRLGAGDTQYF TRBV10-2*01 TRBJ2-3*01 14.0 709.0 _CASRLGAGDTQYF 2 4040 EBV-BLMF1 EBV 0.5 2531 NEG 109 3931 8 EBV BLMF1 GLCTLVAML effector memory T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*02:01 B2M MHCI -3513 chip0420_384989 -3.6 8.56 Chip1 T1D_1 T1D TGTGCCAGCAGTTCCTCCGACGGGGACTGGGGGGCCAACGTCCTGACTTTC CASSSSDGDWGANVLTF TRBV12-3*01,TRBV12-4*01 TRBJ2-6*01 17.0 723.0 _CASSSSDGDWGANVLTF 1 4957 PGT-178 PGT 0.8 1480 PGT-178 102 4855 2 HomoSapiens PGT LLAGIGTVPI Naive T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*02:01 B2M MHCI -3514 chip0420_736041 12.52 13.05 Chip1 T1D_2 T1D TGCGCCAGCAGTCAATCGAGAGGGTCGCTCTGGGATACGCAGTATTTT CASSQSRGSLWDTQYF TRBV4-3*01 TRBJ2-3*01 41.0 1841.0 _CASSQSRGSLWDTQYF 21 1971 EBV-BRLF1 EBV 0.96 1264 EBV-BRLF1 113 1858 11 EBV BRLF1 YVLDHLIVV effector T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*02:01 B2M MHCI -3515 chip0420_267199 -2.12 8.34 Chip1 T1D_3 T1D TGTGCCAGCAGTTGGGACAGGGGGAGGACTGAAGCTTTCTTT CASSWDRGRTEAFF TRBV6-2*01,TRBV6-3*01 TRBJ1-1*01 21.0 952.0 _CASSWDRGRTEAFF 1 4803 ZNT8-YAY-8 ZNT8 0.72 54 ZNT8-YAY-8 112 4691 3 HomoSapiens ZNT8 YAYAKWKL Naive T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-B*08:01 B2M MHCI -3516 chip0420_592157 11.94 6.92 Chip1 T1D_2 T1D TGCAGCGTGGGGACAGGGGGAACTAAGGAAAAACTGTTTTTT CSVGTGGTKEKLFF TRBV29-1*01 TRBJ1-4*01 59.0 2493.0 _CSVGTGGTKEKLFF 1 4059 EBV-BLMF1 EBV 0.67 2531 NEG 140 3919 10 EBV BLMF1 GLCTLVAML effector memory T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*02:01 B2M MHCI -3517 chip0420_345470 9.39 9.57 Chip1 T1D_3 T1D _ 6746 4264 BZLF1-190-197 EBV 0.81 2156 NEG 117 4147 8 EBV BZLF1 RAKFKQLL effector memory T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-B*08:01 B2M MHCI -3518 chip0420_171840 13.17 10.61 Chip1 T1D_1 T1D _ 6746 3033 EBV-BRLF1 EBV 0.95 1264 EBV-BRLF1 111 2922 9 EBV BRLF1 YVLDHLIVV effector memory T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*02:01 B2M MHCI -3519 chip0420_707535 7.15 14.04 Chip1 healthy_1 healthy TGTGCCAGTAGTATAAGAAGTTCCTACGAGCAGTACTTC CASSIRSSYEQYF TRBV19*01 TRBJ2-7*01 2.0 41.0 _CASSIRSSYEQYF 36 3533 M1 FLU 0.88 1250 M1 128 3405 7 InfluenzaA M1 GILGFVFTL transitional T cells between effector and memory populations PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*02:01 B2M MHCI -3520 chip0420_448315 -4.11 8.93 Chip1 healthy_1 healthy TGTGCCAGCAGTTCACCGACAGGGGAGGGCTCTGAAGCTTTCTTT CASSSPTGEGSEAFF TRBV12-3*01,TRBV12-4*01 TRBJ1-1*01 26.0 931.0 _CASSSPTGEGSEAFF 1 5785 PGT-178 PGT 0.88 1480 PGT-178 98 5687 2 HomoSapiens PGT LLAGIGTVPI Naive T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*02:01 B2M MHCI -3521 chip0420_609136 9.28 11.27 Chip1 T1D_2 T1D TGTGCCGTGAAAGACACCGACAAGCTCATCTTT CAVKDTDKLIF TRAV8-1*01 TRAJ34*01 28.0 2183.0 TGTGCCAGCAGCGCGCTCCTAGGGAGCAATCAGCCCCAGCATTTT CASSALLGSNQPQHF TRBV6-1*01 TRBJ1-5*01 17.0 523.0 CAVKDTDKLIF_CASSALLGSNQPQHF 1 3598 EBV-BRLF1 EBV 0.79 1264 EBV-BRLF1 131 3467 9 EBV BRLF1 YVLDHLIVV effector memory T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*02:01 B2M MHCI -3522 chip0420_501999 15.52 10.15 Chip1 T1D_1 T1D TGTGCCAGCAGCACGGGACAGCTATCGAACACCGGGGAGCTGTTTTTT CASSTGQLSNTGELFF TRBV9*01 TRBJ2-2*01 60.0 2642.0 _CASSTGQLSNTGELFF 82 3744 EBV-BLMF1 EBV 0.86 2531 NEG 122 3622 12 EBV BLMF1 GLCTLVAML effector T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*02:01 B2M MHCI -3523 chip0420_450947 -2.12 12.55 Chip1 T1D_1 T1D _ 6746 3775 ZNT8-115-123 ZNT8 0.54 74 ZNT8-115-123 116 3659 1 HomoSapiens ZNT8 LLSLFSLWL Naive T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*02:01 B2M MHCI -3524 chip0420_855394 -2.32 9.65 Chip1 T1D_1 T1D TGTGCCAGCAGCTTCGTGAGCCGGGGGACCGGGGAGCTGTTTTTT CASSFVSRGTGELFF TRBV5-6*01 TRBJ2-2*01 35.0 1616.0 _CASSFVSRGTGELFF 1 4924 PGT-178 PGT 0.47 1480 PGT-178 100 4824 3 HomoSapiens PGT LLAGIGTVPI Naive T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*02:01 B2M MHCI -3525 chip0420_762546 6.45 11.45 Chip1 T1D_1 T1D _ 6746 3327 EBV-BRLF1 EBV 0.87 1264 EBV-BRLF1 106 3221 7 EBV BRLF1 YVLDHLIVV transitional T cells between effector and memory populations PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*02:01 B2M MHCI -3526 chip0420_748358 -2.82 9.59 Chip1 T1D_1 T1D _ 6746 5068 PGT-178 PGT 0.51 1480 PGT-178 99 4969 2 HomoSapiens PGT LLAGIGTVPI Naive T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*02:01 B2M MHCI -3527 chip0420_346534 6.2 13.2 Chip1 T1D_1 T1D _ 6746 4124 M1 FLU 0.69 1250 M1 139 3985 7 InfluenzaA M1 GILGFVFTL transitional T cells between effector and memory populations PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*02:01 B2M MHCI -3528 chip0420_832329 6.3 13.76 Chip1 healthy_1 healthy TGTGCCAGTAGTATAAGAAGTTCCTACGAGCAGTACTTC CASSIRSSYEQYF TRBV19*01 TRBJ2-7*01 6.0 413.0 _CASSIRSSYEQYF 36 3006 M1 FLU 0.83 1250 M1 118 2888 7 InfluenzaA M1 GILGFVFTL transitional T cells between effector and memory populations PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*02:01 B2M MHCI -3529 chip0420_593170 -3.97 9.01 Chip1 T1D_2 T1D _ 6746 4026 ROTA-VP3 ROTA 0.5 41 NEG 113 3913 2 RotavirusA VP3 YLLPGWKL Naive T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*02:01 B2M MHCI -3530 chip0420_464420 11.08 10.57 Chip1 T1D_1 T1D TGTGTGGTGAACAGACGGGATAGCAGCTATAAATTGATCTTC CVVNRRDSSYKLIF TRAV12-1*01 TRAJ12*01 68.0 2132.0 TGTGCCAGCAGTGACGGTCGGGTCCACCCGGGGACCCAGTACTTC CASSDGRVHPGTQYF TRBV2*01 TRBJ2-5*01 16.0 396.0 CVVNRRDSSYKLIF_CASSDGRVHPGTQYF 1 3817 EBV-BLMF1 EBV 1.0 2531 NEG 107 3710 9 EBV BLMF1 GLCTLVAML effector memory T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*02:01 B2M MHCI -3531 chip0420_834893 -0.91 8.32 Chip1 healthy_1 healthy _ 6746 4438 PGT-178 PGT 0.67 1480 PGT-178 110 4328 4 HomoSapiens PGT LLAGIGTVPI Naive T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*02:01 B2M MHCI -3532 chip0420_744617 10.16 10.83 Chip1 T1D_2 T1D TGTGCCTTAGGAGGACTGACCTTT CALGGLTF TRAV8-1*01 TRAJ22*01 4.0 249.0 TGTGCCAGCAGCCCCTCGACTAGCGGGAGTGGGGAGACCCAGTACTTC CASSPSTSGSGETQYF TRBV3-1*01 TRBJ2-5*01 27.0 1747.0 CALGGLTF_CASSPSTSGSGETQYF 12 3225 EBV-BRLF1 EBV 0.89 1264 EBV-BRLF1 126 3099 9 EBV BRLF1 YVLDHLIVV effector memory T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*02:01 B2M MHCI -3533 chip0420_166361 6.68 10.22 Chip1 T1D_2 T1D _ 6746 4433 EBV-LMP2A EBV 0.75 700 NEG 114 4319 6 EBV LMP2A CLGGLLTMV central memory T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*02:01 B2M MHCI -3534 chip0420_735614 -4.36 9.01 Chip1 T1D_1 T1D TGCAGCGGTCCTCCGGGAACCTTC CSGPPGTF TRBV20-1*01 TRBJ1-2*01 11.0 1205.0 _CSGPPGTF 1 5141 PGT-178 PGT 0.49 1480 PGT-178 96 5045 2 HomoSapiens PGT LLAGIGTVPI Naive T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*02:01 B2M MHCI -3535 chip0420_250784 9.15 8.92 Chip1 T1D_2 T1D TGTGCAGCAAGCGGAGGCCGCCACGGCACTCTCCTCTTT CAASGGRHGTLLF TRAV29/DV5*01 TRAJ42*01 15.0 725.0 TGCAGCTCGCAGGAGGGCGGCTATGGCTACACCTTC CSSQEGGYGYTF TRBV29-1*01 TRBJ1-2*01 133.0 7852.0 CAASGGRHGTLLF_CSSQEGGYGYTF 1 4133 EBV-BLMF1 EBV 0.67 2531 EBV-BLMF1 111 4022 8 EBV BLMF1 GLCTLVAML effector memory T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*02:01 B2M MHCI -3536 chip0420_19428 4.89 10.23 Chip1 T1D_1 T1D _ 6746 3584 MART1-A28L MART1 0.48 84 NEG 135 3449 6 HomoSapiens MART1 ALGIGILTV central memory T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*02:01 B2M MHCI -3537 chip0420_721684 11.38 8.45 Chip1 T1D_1 T1D _ 6746 3663 EBV-BRLF1 EBV 0.86 1264 EBV-BRLF1 126 3537 10 EBV BRLF1 YVLDHLIVV effector memory T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*02:01 B2M MHCI -3538 chip0420_537498 11.42 8.89 Chip1 T1D_2 T1D TGTGCCGTGACGGCCACCGACAAGCTCATCTTT CAVTATDKLIF TRAV8-1*01 TRAJ34*01 24.0 2093.0 TGTGCCAGCTCTTTGCCGGGCCTGAACTATGGCTACACCTTC CASSLPGLNYGYTF TRBV19*01 TRBJ1-2*01 6.0 298.0 CAVTATDKLIF_CASSLPGLNYGYTF 1 2746 EBV-BRLF1 EBV 0.97 1264 EBV-BRLF1 119 2627 10 EBV BRLF1 YVLDHLIVV effector memory T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*02:01 B2M MHCI -3539 chip0420_707637 11.36 12.49 Chip1 T1D_1 T1D TGCGGCCCCGAGGAACCTAACGACTACAAGCTCAGCTTT CGPEEPNDYKLSF TRAV30*01 TRAJ20*01 30.0 2098.0 CGPEEPNDYKLSF_ 13 2357 EBV-BLMF1 EBV 0.83 2531 NEG 125 2232 11 EBV BLMF1 GLCTLVAML effector T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*02:01 B2M MHCI -3540 chip0420_297492 10.39 10.27 Chip1 T1D_1 T1D TGCAGCGTCGGCTCCAGGGGAACTAATGAAAAACTGTTTTTT CSVGSRGTNEKLFF TRBV29-1*01 TRBJ1-4*01 128.0 7726.0 _CSVGSRGTNEKLFF 283 3698 EBV-BLMF1 EBV 0.75 2531 NEG 113 3585 9 EBV BLMF1 GLCTLVAML effector memory T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*02:01 B2M MHCI -3541 chip0420_159625 -2.53 14.58 Chip1 T1D_1 T1D TGTGCCAGCCAAACCCAGGGGCTAGCGGGAACAGATACGCAGTATTTT CASQTQGLAGTDTQYF TRBV6-1*01 TRBJ2-3*01 58.0 1801.0 _CASQTQGLAGTDTQYF 1 2423 PGT-178 PGT 0.96 1480 PGT-178 120 2303 1 HomoSapiens PGT LLAGIGTVPI Naive T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*02:01 B2M MHCI -3542 chip0420_677940 6.42 12.5 Chip1 healthy_2 healthy TGTGCCAGCAGTTATAGTTACGAGCAGTACTTC CASSYSYEQYF TRBV6-1*01 TRBJ2-7*01 11.0 686.0 _CASSYSYEQYF 2 2753 ROTA-VP6 ROTA 0.57 47 NEG 119 2634 7 RotavirusA VP6 TLLANVTAV transitional T cells between effector and memory populations PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*02:01 B2M MHCI -3543 chip0420_632257 12.52 12.73 Chip1 T1D_2 T1D TGTGCAGAGAAGGCCTGGGGGTTACCAGAAAGTTACCTTT CAEKAWgg??gtYQKVTF TRAV5*01 TRAJ13*01 36.0 2136.0 TGCAGCGTGGGGACAGGGGGAACTAATGAAAAACTGTTTTTT CSVGTGGTNEKLFF TRBV29-1*01 TRBJ1-4*01 81.0 3662.0 CAEKAWgg??gtYQKVTF_CSVGTGGTNEKLFF 4 2032 EBV-BLMF1 EBV 0.8 2531 NEG 122 1910 10 EBV BLMF1 GLCTLVAML effector memory T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*02:01 B2M MHCI -3544 chip0420_59192 11.5 12.47 Chip1 T1D_1 T1D _ 6746 1691 EBV-BLMF1 EBV 0.5 2531 NEG 99 1592 11 EBV BLMF1 GLCTLVAML effector T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*02:01 B2M MHCI -3545 chip0420_467094 10.6 10.41 Chip1 T1D_2 T1D TGCAGCGTGGGGACAGGGGGAACTAATGAAAAACTGTTTTTT CSVGTGGTNEKLFF TRBV29-1*01 TRBJ1-4*01 38.0 1049.0 _CSVGTGGTNEKLFF 638 3701 EBV-BLMF1 EBV 0.56 2531 NEG 124 3577 9 EBV BLMF1 GLCTLVAML effector memory T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*02:01 B2M MHCI -3546 chip0420_301278 10.4 11.83 Chip1 T1D_1 T1D _ 6746 2892 HCVNS4B-1807-1816 HCV 1.0 74 NEG 109 2783 9 HCV NS4B LLFNILGGWV effector memory T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*02:01 B2M MHCI -3547 chip0420_861675 5.82 13.56 Chip1 healthy_1 healthy TGTGCTGGAGCGGGGAGCCAGGGGAATCTCATCTTT CAGAGSQGNLIF TRAV27*01 TRAJ42*01 37.0 2106.0 TGTGCCAGTAGTACGCGGAGCTCCTACGAGCAGTACTTC CASSTRSSYEQYF TRBV19*01 TRBJ2-7*01 7.0 465.0 CAGAGSQGNLIF_CASSTRSSYEQYF 1 5166 M1 FLU 0.81 1250 M1 102 5064 7 InfluenzaA M1 GILGFVFTL transitional T cells between effector and memory populations PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*02:01 B2M MHCI -3548 chip0420_794941 12.58 10.08 Chip1 T1D_1 T1D TGTGCCACCCAACAGGGGAGGGACAGTCAGCCCCAGCATTTT CATQQGRDSQPQHF TRBV28*01 TRBJ1-5*01 24.0 1165.0 _CATQQGRDSQPQHF 52 3405 EBV-BLMF1 EBV 0.67 2531 NEG 110 3295 9 EBV BLMF1 GLCTLVAML effector memory T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*02:01 B2M MHCI -3549 chip0420_718708 11.25 11.0 Chip1 T1D_1 T1D TGCAGCGTCGGCTCCAGGGGAACTAATGAAAAACTGTTTTTT CSVGSRGTNEKLFF TRBV29-1*01 TRBJ1-4*01 154.0 8000.0 _CSVGSRGTNEKLFF 283 4081 EBV-BLMF1 EBV 1.0 2531 NEG 119 3962 9 EBV BLMF1 GLCTLVAML effector memory T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*02:01 B2M MHCI -3550 chip0420_863754 12.23 7.55 Chip1 T1D_2 T1D TGTGCCAGCAACTTAACGGGGAACAATGAGCAGTTCTTC CASNLTGNNEQFF TRBV9*01 TRBJ2-1*01 26.0 1754.0 _CASNLTGNNEQFF 1 3152 EBV-BLMF1 EBV 0.74 2531 EBV-BLMF1 123 3029 10 EBV BLMF1 GLCTLVAML effector memory T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*02:01 B2M MHCI -3551 chip0420_325557 8.94 11.49 Chip1 T1D_1 T1D TGTGCCAGTAGTATGATGACCCGGGAAAAACCGTTTTTT CASSMMTREKPFF TRBV19*01 TRBJ1-4*01 15.0 657.0 _CASSMMTREKPFF 1 4010 EBV-BRLF1 EBV 0.98 1264 EBV-BRLF1 117 3893 9 EBV BRLF1 YVLDHLIVV effector memory T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*02:01 B2M MHCI -3552 chip0420_794374 9.74 11.3 Chip1 healthy_1 healthy TGCAGTGCTAGCCGGGCCTTGGAGCAGCCCCAGCATTTT CSASRALEQPQHF TRBV20-1*01 TRBJ1-5*01 35.0 2393.0 _CSASRALEQPQHF 1 3644 EBV-BRLF1 EBV 1.0 1264 EBV-BRLF1 134 3510 9 EBV BRLF1 YVLDHLIVV effector memory T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*02:01 B2M MHCI -3553 chip0420_609846 6.64 10.21 Chip1 T1D_1 T1D TGTGCCTCACGCCGGGACGGCACTGAAGCTTTCTTT CASRRDGTEAFF TRBV30*01 TRBJ1-1*01 27.0 1736.0 _CASRRDGTEAFF 2 4237 CVB3-P3A CVB 0.88 77 CVB3-P3A 130 4107 6 CoxsackievirusB P3A GIIYIIYKL central memory T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*02:01 B2M MHCI -3554 chip0420_167377 10.45 10.39 Chip1 T1D_3 T1D TGTGCCAGCAGCCTCACCCTAATTAGCGGGGACTCCTACAATGAGCAGTTCTTC CASSLTLISGDSYNEQFF TRBV7-3*01 TRBJ2-1*01 3.0 62.0 _CASSLTLISGDSYNEQFF 2 2498 BZLF1-190-197 EBV 0.46 2156 NEG 112 2386 9 EBV BZLF1 RAKFKQLL effector memory T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-B*08:01 B2M MHCI -3555 chip0420_152598 11.09 10.52 Chip1 T1D_1 T1D TGCGGCCCAGAGGAACCTAACGACTACAAGCTCAGCTTT CGPEEPNDYKLSF TRAV30*01 TRAJ20*01 49.0 3525.0 TGCAGCGTTGAAGGGGGAGGGTACAATGAGCAGTTCTTC CSVEGGGYNEQFF TRBV29-1*01 TRBJ2-1*01 2.0 100.0 CGPEEPNDYKLSF_CSVEGGGYNEQFF 1 3191 EBV-BLMF1 EBV 0.85 2531 NEG 117 3074 9 EBV BLMF1 GLCTLVAML effector memory T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*02:01 B2M MHCI -3556 chip0420_585119 -2.91 8.18 Chip1 healthy_2 healthy TGTGCCGGCAGTGGGGGCCCTCATACCGGGACAGAGAACAATGAGCAGTTCTTC CAGSGGPHTGTENNEQFF TRBV11-3*01 TRBJ2-1*01 9.0 201.0 _CAGSGGPHTGTENNEQFF 1 5010 GAD65-114-122 GAD65 0.69 63 GAD65-114-122 123 4887 2 HomoSapiens GAD65 VMNILLQYV Naive T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*02:01 B2M MHCI -3557 chip0420_398802 -3.29 9.32 Chip1 T1D_2 T1D TGCGCCAGCAGCCAAGACGAGGGTGGGGCTGAAGCTTTCTTT CASSQDEGGAEAFF TRBV4-1*01 TRBJ1-1*01 21.0 953.0 _CASSQDEGGAEAFF 1 4275 ZNT8-141-149 ZNT8 0.92 5 ZNT8-141-149 101 4174 2 HomoSapiens ZNT8 ILGALLSIL Naive T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*02:01 B2M MHCI -3558 chip0420_805143 -3.41 8.84 Chip1 T1D_1 T1D TGTGTGGTGAACAGGGGGACTCACAACTTCAACAAATTTTACCTT CVVNRGTHNFNKFYL TRAV12-1*01 TRAJ21*01 39.0 1982.0 CVVNRGTHNFNKFYL_ 1 5133 ZNT8-165-173 ZNT8 0.73 11 ZNT8-165-173 109 5024 2 HomoSapiens ZNT8 RLLYPDYQI Naive T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*02:01 B2M MHCI -3559 chip0420_252708 14.98 12.38 Chip1 T1D_1 T1D TGTGCTCTCTATAACACCGACAAGCTCATCTTT CALYNTDKLIF TRAV9-2*01 TRAJ34*01 35.0 2164.0 CALYNTDKLIF_ 10 2456 EBV-BLMF1 EBV 0.75 2531 NEG 123 2333 12 EBV BLMF1 GLCTLVAML effector T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*02:01 B2M MHCI -3560 chip0420_90696 -1.14 6.7 Chip1 healthy_1 healthy TGTGCCAGCAGTTACTCAGGGGACACTGAAGCTTTCTTT CASSYSGDTEAFF TRBV6-5*01 TRBJ1-1*01 39.0 1363.0 _CASSYSGDTEAFF 1 6014 PGT-178 PGT 0.77 1480 PGT-178 110 5904 3 HomoSapiens PGT LLAGIGTVPI Naive T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*02:01 B2M MHCI -3561 chip0420_661485 13.97 10.76 Chip1 T1D_2 T1D TGTGCTGTGGCCCTGGGGGCAGAGGCTCAACCCTGGGGCGGCTATACTTT CAVALGAEg?cSTLGRLYF TRAV36/DV7*01 TRAJ18*01 12.0 294.0 CAVALGAEg?cSTLGRLYF_ 1 2760 EBV-BRLF1 EBV 0.75 1264 NEG 112 2648 12 EBV BRLF1 YVLDHLIVV effector T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*02:01 B2M MHCI -3562 chip0420_380034 15.55 9.3 Chip1 T1D_1 T1D TGTGCCAGCAGCACGGGACAGCTATCGAACTCCGGGGAGCTGTTTTTT CASSTGQLSNSGELFF TRBV9*01 TRBJ2-2*01 3.0 151.0 _CASSTGQLSNSGELFF 1 1784 EBV-BLMF1 EBV 0.85 2531 NEG 115 1669 12 EBV BLMF1 GLCTLVAML effector T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*02:01 B2M MHCI -3563 chip0420_825382 15.95 11.54 Chip1 T1D_1 T1D _ 6746 2140 EBV-BLMF1 EBV 0.71 2531 NEG 98 2042 12 EBV BLMF1 GLCTLVAML effector T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*02:01 B2M MHCI -3564 chip0420_311684 -2.19 12.19 Chip1 T1D_1 T1D TGTGCCAGCAGGGGACTATATGGCTACACCTTC CASRGLYGYTF TRBV13*01 TRBJ1-2*01 1.0 25.0 _CASRGLYGYTF 1 3673 ROTA-VP3 ROTA 0.78 41 ROTA-VP3 107 3566 4 RotavirusA VP3 YLLPGWKL Naive T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*02:01 B2M MHCI -3565 chip0420_1368 13.14 13.11 Chip1 T1D_2 T1D TGCAGCGTGGGGACAGGGGGAACTAATGAAAAACTGTTTTTT CSVGTGGTNEKLFF TRBV29-1*01 TRBJ1-4*01 44.0 1787.0 _CSVGTGGTNEKLFF 638 1358 EBV-BLMF1 EBV 0.75 2531 NEG 121 1237 10 EBV BLMF1 GLCTLVAML effector memory T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*02:01 B2M MHCI -3566 chip0420_769670 -3.73 8.18 Chip1 healthy_2 healthy TGTGCCCGCAGCGTAGCTTCACTCGCCTCCTACGAGCAGTACTTC CARSVASLASYEQYF TRBV9*01 TRBJ2-7*01 3.0 189.0 _CARSVASLASYEQYF 1 5213 GAD2-FQQ-9 GAD65 0.58 10 NEG 119 5094 2 HomoSapiens GAD2 FQQDKHYDL Naive T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-B*08:01 B2M MHCI -3567 chip0420_245382 11.0 9.05 Chip1 T1D_2 T1D TGTGCCAGCAGCTCGGGACTAGTCGCCCCCGGGGAGCTGTTTTTT CASSSGLVAPGELFF TRBV2*01 TRBJ2-2*01 19.0 1240.0 _CASSSGLVAPGELFF 133 4536 EBV-BLMF1 EBV 0.86 2531 NEG 113 4423 10 EBV BLMF1 GLCTLVAML effector memory T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*02:01 B2M MHCI -3568 chip0420_745778 15.38 9.35 Chip1 T1D_1 T1D TGCGGCACAGAGGAACCTAACGACTACAAGCTCAGCTTT CGTEEPNDYKLSF TRAV30*01 TRAJ20*01 33.0 2181.0 TGTGCCAGCAGCACGGGACAGCTATCGAACACCGGGGAGCTGTTTTTT CASSTGQLSNTGELFF TRBV9*01 TRBJ2-2*01 48.0 2919.0 CGTEEPNDYKLSF_CASSTGQLSNTGELFF 18 2153 EBV-BLMF1 EBV 0.52 2531 NEG 121 2032 12 EBV BLMF1 GLCTLVAML effector T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*02:01 B2M MHCI -3569 chip0420_598437 -3.49 9.03 Chip1 T1D_1 T1D _ 6746 6679 PGT-178 PGT 0.5 1480 PGT-178 93 6586 2 HomoSapiens PGT LLAGIGTVPI Naive T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*02:01 B2M MHCI -3570 chip0420_793837 7.94 8.27 Chip1 healthy_1 healthy _ 6746 5995 PTPRN-482-490 PTPRN 0.56 10 PTPRN-482-490 108 5887 8 HomoSapiens PTPRN SLAAGVKLL effector memory T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*02:01 B2M MHCI -3571 chip0420_369029 7.84 11.0 Chip1 healthy_1 healthy _ 6746 4392 M1 FLU 0.89 1250 M1 95 4297 7 InfluenzaA M1 GILGFVFTL transitional T cells between effector and memory populations PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*02:01 B2M MHCI -3572 chip0420_192742 15.52 10.25 Chip1 T1D_2 T1D TGCAGCGTGGGGACAGGGGGAACTAATGAAAAACTGTTTTTT CSVGTGGTNEKLFF TRBV29-1*01 TRBJ1-4*01 34.0 1761.0 _CSVGTGGTNEKLFF 638 3403 EBV-BLMF1 EBV 0.67 2531 NEG 115 3288 12 EBV BLMF1 GLCTLVAML effector T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*02:01 B2M MHCI -3573 chip0420_318732 10.42 11.81 Chip1 T1D_2 T1D TGTGCAGAGAGTACTTCGGGAGGAAAGCTTATCTTC CAESTSGGKLIF TRAV5*01 TRAJ23*01 27.0 2107.0 TGCAGCGTGGGGACAGGGGGGACTAATGAAAAACTGTTTTTT CSVGTGGTNEKLFF TRBV29-1*01 TRBJ1-4*01 18.0 1081.0 CAESTSGGKLIF_CSVGTGGTNEKLFF 107 2711 EBV-BLMF1 EBV 0.75 2531 NEG 124 2587 9 EBV BLMF1 GLCTLVAML effector memory T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*02:01 B2M MHCI -3574 chip0420_876992 12.22 7.05 Chip1 T1D_1 T1D TGTGCTGTGCGTGATACCGGCCCGAACCTACAAATACATCTTT CAVRDTG??cRTYKYIF TRAV8-6*01 TRAJ40*01 39.0 2124.0 TGTGCCAGCAGTCCGGACCAAACTAGCTCCTACAATGAGCAGTTCTTC CASSPDQTSSYNEQFF TRBV27*01 TRBJ2-1*01 46.0 2595.0 CAVRDTG??cRTYKYIF_CASSPDQTSSYNEQFF 1 3910 EBV-BRLF1 EBV 0.92 1264 EBV-BRLF1 133 3777 10 EBV BRLF1 YVLDHLIVV effector memory T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*02:01 B2M MHCI -3575 chip0420_817906 6.39 12.58 Chip1 T1D_1 T1D _ 6746 3961 M1 FLU 0.7 1250 M1 112 3849 7 InfluenzaA M1 GILGFVFTL transitional T cells between effector and memory populations PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*02:01 B2M MHCI -3576 chip0420_742619 11.33 13.71 Chip1 T1D_2 T1D TGTGCCGTGGGGACGGGAGGTGCTGACGGACTCACCTTT CAVGTGGADGLTF TRAV12-2*01 TRAJ45*01 19.0 1549.0 TGTGCCATCAGTGGGTCTCCAGGGGGTAACTATGGCTACACCTTC CAISGSPGGNYGYTF TRBV10-3*01 TRBJ1-2*01 31.0 1579.0 CAVGTGGADGLTF_CAISGSPGGNYGYTF 2 1762 PGT-178 PGT 0.41 1480 NEG 108 1654 11 HomoSapiens PGT LLAGIGTVPI effector T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*02:01 B2M MHCI -3577 chip0420_76818 13.91 8.48 Chip1 T1D_1 T1D _ 6746 1809 EBV-BLMF1 EBV 0.6 2531 NEG 126 1683 12 EBV BLMF1 GLCTLVAML effector T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*02:01 B2M MHCI -3578 chip0420_601666 10.44 11.44 Chip1 T1D_2 T1D TGCAGCGTTGGGGGCAGCTTCTATGGCTACACCTTC CSVGGSFYGYTF TRBV29-1*01 TRBJ1-2*01 96.0 9118.0 _CSVGGSFYGYTF 42 2618 EBV-BLMF1 EBV 1.0 2531 NEG 126 2492 9 EBV BLMF1 GLCTLVAML effector memory T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*02:01 B2M MHCI -3579 chip0420_356916 5.77 12.03 Chip1 healthy_1 healthy _ 6746 4709 M1 FLU 0.83 1250 NEG 104 4605 7 InfluenzaA M1 GILGFVFTL transitional T cells between effector and memory populations PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*02:01 B2M MHCI -3580 chip0420_196073 5.66 12.55 Chip1 T1D_1 T1D TGTGCCGCAAGTACAGGGGTTTTAGGCTACACCTTC CAASTGVLGYTF TRBV19*01 TRBJ1-2*01 67.0 3859.0 _CAASTGVLGYTF 1 5420 M1 FLU 0.41 1250 NEG 105 5315 7 InfluenzaA M1 GILGFVFTL transitional T cells between effector and memory populations PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*02:01 B2M MHCI -3581 chip0420_177054 -2.18 7.58 Chip1 healthy_1 healthy _ 6746 5071 M1 FLU 0.56 1250 NEG 107 4964 4 InfluenzaA M1 GILGFVFTL Naive T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*02:01 B2M MHCI -3582 chip0420_148193 14.54 10.43 Chip1 T1D_1 T1D _ 6746 3889 EBV-BLMF1 EBV 0.56 2531 NEG 130 3759 12 EBV BLMF1 GLCTLVAML effector T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*02:01 B2M MHCI -3583 chip0420_523846 5.76 12.22 Chip1 T1D_1 T1D _ 6746 4185 GFAP-143-151 GFAP 0.97 5 GFAP-143-151 110 4075 7 HomoSapiens GFAP NLAQDLATV transitional T cells between effector and memory populations PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*02:01 B2M MHCI -3584 chip0420_719961 11.95 7.46 Chip1 T1D_1 T1D TGTGCCGTCAAGGACACCGACAGGCTCATCTTT CAVKDTDRLIF TRAV8-1*01 TRAJ34*01 14.0 850.0 TGTGCCAGTAGTCCCCACTTGGGTGCGGCGGCCGAGCAGTACTTC CASSPHLGAAAEQYF TRBV19*01 TRBJ2-7*01 1.0 19.0 CAVKDTDRLIF_CASSPHLGAAAEQYF 1 3233 EBV-BRLF1 EBV 0.69 1264 EBV-BRLF1 126 3107 10 EBV BRLF1 YVLDHLIVV effector memory T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*02:01 B2M MHCI -3585 chip0420_649012 9.09 13.98 Chip1 healthy_1 healthy _ 6746 1437 M1 FLU 0.88 1250 NEG 123 1314 11 InfluenzaA M1 GILGFVFTL effector T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*02:01 B2M MHCI -3586 chip0420_727665 6.2 13.28 Chip1 T1D_1 T1D _ 6746 3172 M1 FLU 0.67 1250 M1 107 3065 7 InfluenzaA M1 GILGFVFTL transitional T cells between effector and memory populations PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*02:01 B2M MHCI -3587 chip0420_693341 9.84 9.89 Chip1 T1D_1 T1D TGTGCCAGCAGGCAACTAGCGGGGAATGGAGAGACCCAGTACTTC CASRQLAGNGETQYF TRBV6-1*01 TRBJ2-5*01 14.0 691.0 _CASRQLAGNGETQYF 1 4034 EBV-BRLF1 EBV 0.87 1264 EBV-BRLF1 122 3912 9 EBV BRLF1 YVLDHLIVV effector memory T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*02:01 B2M MHCI -3588 chip0420_444526 6.67 10.8 Chip1 T1D_1 T1D TGTGCCAGCAGCCAAGGGTTATCGTTTCCGCGACCGCGTGAAGCTTTCTTT CASSQGLSFPRPREAFF TRBV3-1*01 TRBJ1-1*01 26.0 1275.0 _CASSQGLSFPRPREAFF 1 8695 M1 FLU 0.87 1250 M1 115 8580 7 InfluenzaA M1 GILGFVFTL transitional T cells between effector and memory populations PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*02:01 B2M MHCI -3589 chip0420_373956 6.8 12.82 Chip1 T1D_1 T1D TGTGCCAGTCGTCCGTTTCATCCCGGGGCGCTGTTTTTT CASRPFHPGALFF TRBV19*01 TRBJ2-2*01 2.0 60.0 _CASRPFHPGALFF 1 3604 M1 FLU 1.0 1250 M1 116 3488 7 InfluenzaA M1 GILGFVFTL transitional T cells between effector and memory populations PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*02:01 B2M MHCI -3590 chip0420_160101 -3.28 13.76 Chip1 T1D_3 T1D _ 6746 2947 NP44-52 FLU 0.44 474 NEG 108 2839 1 InfluenzaA NP CTELKLSDY Naive T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*01:01 B2M MHCI -3591 chip0420_829410 5.49 12.14 Chip1 T1D_2 T1D TGTGCAATGAGAGAGTCCTCGTATGGGGGTTACCAGAAAGTTACCTTT CAMRESSYGGYQKVTF TRAV14/DV4*01 TRAJ13*01 161.0 4126.0 TGCAGCGTTCGGACAGGAATAGCCAAAAACATTCAGTACTTC CSVRTGIAKNIQYF TRBV29-1*01 TRBJ2-4*01 25.0 1229.0 CAMRESSYGGYQKVTF_CSVRTGIAKNIQYF 1 4485 ADH-79-88 ADH 1.0 15 NEG 116 4369 7 HomoSapiens ADH RQFGPDWIVA transitional T cells between effector and memory populations PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*02:01 B2M MHCI -3592 chip0420_489376 9.06 12.15 Chip1 T1D_2 T1D TGCAGCGTGGGGACAGGGGGAACTAATGAAAAACTGTTTTTT CSVGTGGTNEKLFF TRBV29-1*01 TRBJ1-4*01 71.0 4263.0 _CSVGTGGTNEKLFF 638 2398 EBV-BLMF1 EBV 0.67 2531 NEG 135 2263 7 EBV BLMF1 GLCTLVAML transitional T cells between effector and memory populations PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*02:01 B2M MHCI -3593 chip0420_309107 13.89 8.06 Chip1 T1D_2 T1D TGTGCCAGCAGCTCGGGACTAGTCGCCCCCGGGGAGCTGTTTTTT CASSSGLVAPGELFF TRBV2*01 TRBJ2-2*01 23.0 1356.0 _CASSSGLVAPGELFF 133 2469 EBV-BLMF1 EBV 0.6 2531 NEG 116 2353 10 EBV BLMF1 GLCTLVAML effector memory T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*02:01 B2M MHCI -3594 chip0420_544476 9.91 10.25 Chip1 T1D_1 T1D TGCAGCGTCGGCTCCAGGGGAACTAATGAAAAACTGTTTTTT CSVGSRGTNEKLFF TRBV29-1*01 TRBJ1-4*01 48.0 3080.0 _CSVGSRGTNEKLFF 283 4200 EBV-BLMF1 EBV 0.85 2531 NEG 129 4071 9 EBV BLMF1 GLCTLVAML effector memory T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*02:01 B2M MHCI -3595 chip0420_545294 11.7 13.29 Chip1 T1D_1 T1D TGCAGCGTCGGCTCCAGGGGAACTAATGAAAAACTGTTTTTT CSVGSRGTNEKLFF TRBV29-1*01 TRBJ1-4*01 49.0 4053.0 _CSVGSRGTNEKLFF 283 2078 EBV-BLMF1 EBV 1.0 2531 NEG 103 1975 11 EBV BLMF1 GLCTLVAML effector T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*02:01 B2M MHCI -3596 chip0420_386107 -2.71 8.24 Chip1 T1D_1 T1D TGTGCAATGACCGCCTCTAACTTTGGAAATGAGAAATTAACCTTT CAMTASNFGNEKLTF TRAV12-3*01 TRAJ48*01 91.0 4178.0 CAMTASNFGNEKLTF_ 1 5481 PGT-178 PGT 0.65 1480 PGT-178 110 5371 2 HomoSapiens PGT LLAGIGTVPI Naive T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*02:01 B2M MHCI -3597 chip0420_141218 13.72 8.39 Chip1 T1D_1 T1D TGTGCCACCCAACAGGGGGGGGACAGTCAGCCCCAGCATCTT CATQQGGDSQPQHL TRBV28*01 TRBJ1-5*01 48.0 1857.0 _CATQQGGDSQPQHL 1 2247 EBV-BLMF1 EBV 0.65 2531 NEG 114 2133 10 EBV BLMF1 GLCTLVAML effector memory T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*02:01 B2M MHCI -3598 chip0420_163324 -2.73 13.13 Chip1 T1D_1 T1D TGCAGCGTTGAATGGGGGGAAGGATACGAGCAGTACTTC CSVEWGEGYEQYF TRBV29-1*01 TRBJ2-7*01 90.0 4851.0 _CSVEWGEGYEQYF 1 3218 GP160-311-320 HIV 0.8 109 NEG 116 3102 1 HIV-1 GP160 RGPGRAFVTI Naive T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*02:01 B2M MHCI -3599 chip0420_151695 6.27 13.42 Chip1 T1D_1 T1D _ 6746 4306 M1 FLU 0.68 1250 M1 106 4200 7 InfluenzaA M1 GILGFVFTL transitional T cells between effector and memory populations PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*02:01 B2M MHCI -3600 chip0420_678879 -2.18 9.66 Chip1 T1D_1 T1D TGTGCCAGCAGCCAAGAGCAGGGTAGGTCCTACAATGAGCAGTTCTTC CASSQEQGRSYNEQFF TRBV3-1*01 TRBJ2-1*01 16.0 1333.0 _CASSQEQGRSYNEQFF 1 5456 PGT-178 PGT 0.85 1480 PGT-178 112 5344 4 HomoSapiens PGT LLAGIGTVPI Naive T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*02:01 B2M MHCI -3601 chip0420_368323 8.5 10.02 Chip1 T1D_2 T1D TGTGCAGCATACGCAGGCAACATGCTCACCTTT CAAYAGNMLTF TRAV29/DV5*01 TRAJ39*01 9.0 562.0 TGCGCCAGCAGGATGGGGGCCGGGGATACGCAGTATTTT CASRMGAGDTQYF TRBV10-2*01 TRBJ2-3*01 51.0 3684.0 CAAYAGNMLTF_CASRMGAGDTQYF 21 4547 EBV-BLMF1 EBV 0.5 2531 NEG 109 4438 8 EBV BLMF1 GLCTLVAML effector memory T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*02:01 B2M MHCI -3602 chip0420_290337 11.15 10.95 Chip1 T1D_1 T1D TGCAGCGTCGGCTCCAGGGGAACTAATGAAAAACTGTTTTTT CSVGSRGTNEKLFF TRBV29-1*01 TRBJ1-4*01 45.0 2207.0 _CSVGSRGTNEKLFF 283 2581 EBV-BLMF1 EBV 0.64 2531 NEG 134 2447 9 EBV BLMF1 GLCTLVAML effector memory T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*02:01 B2M MHCI -3603 chip0420_217668 9.43 10.24 Chip1 T1D_2 T1D TGTGCTGGGCCTGGAAGCCAAGGAAATCTCATTTTT CAGPGSQGNLIF TRAV27*01 TRAJ42*01 5.0 437.0 TGCGCCAGCAGAGCGGGAGCCGGGGATACGCAGTATTTT CASRAGAGDTQYF TRBV10-2*01 TRBJ2-3*01 4.0 84.0 CAGPGSQGNLIF_CASRAGAGDTQYF 1 3444 EBV-BLMF1 EBV 0.45 2531 NEG 113 3331 9 EBV BLMF1 GLCTLVAML effector memory T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*02:01 B2M MHCI -3604 chip0420_520170 7.18 13.27 Chip1 T1D_1 T1D _ 6746 3778 M1 FLU 0.86 1250 M1 113 3665 7 InfluenzaA M1 GILGFVFTL transitional T cells between effector and memory populations PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*02:01 B2M MHCI -3605 chip0420_505429 9.22 9.86 Chip1 T1D_1 T1D TGCAGCATCCAAGAGGGGGGGTATGGCTACACCTTC CSIQEGGYGYTF TRBV29-1*01 TRBJ1-2*01 33.0 2112.0 _CSIQEGGYGYTF 1 5117 EBV-BLMF1 EBV 0.67 2531 NEG 109 5008 8 EBV BLMF1 GLCTLVAML effector memory T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*02:01 B2M MHCI -3606 chip0420_331654 10.15 11.1 Chip1 T1D_1 T1D _ 6746 3536 EBV-BLMF1 EBV 0.9 2531 NEG 131 3405 9 EBV BLMF1 GLCTLVAML effector memory T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*02:01 B2M MHCI -3607 chip0420_189864 -4.08 11.17 Chip1 healthy_1 healthy TGTGCTTATCTCAGGGACAATAACAATGACATGCGCTTT CAYLRDNNNDMRF TRAV38-1*01 TRAJ43*01 22.0 1710.0 CAYLRDNNNDMRF_ 1 4353 GP160-311-320 HIV 0.82 109 GP160-311-320 101 4252 1 HIV-1 GP160 RGPGRAFVTI Naive T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*02:01 B2M MHCI -3608 chip0420_155185 14.6 8.58 Chip1 T1D_1 T1D TGCGGCACAGAGGAACCTAACGACTACAAGCTCAGCTTT CGTEEPNDYKLSF TRAV30*01 TRAJ20*01 1.0 16.0 CGTEEPNDYKLSF_ 22 2349 EBV-BLMF1 EBV 0.61 2531 EBV-BLMF1 104 2245 12 EBV BLMF1 GLCTLVAML effector T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*02:01 B2M MHCI -3609 chip0420_805938 12.43 8.41 Chip1 T1D_1 T1D TGCGGCCCAGAGGAACCTAACGACTACAAGCTCAGCTTT CGPEEPNDYKLSF TRAV30*01 TRAJ20*01 51.0 2663.0 CGPEEPNDYKLSF_ 13 2119 EBV-BLMF1 EBV 0.47 2531 NEG 119 2000 10 EBV BLMF1 GLCTLVAML effector memory T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*02:01 B2M MHCI -3610 chip0420_738234 12.37 12.92 Chip1 T1D_2 T1D TGCAGCTCGCAGGAGGGCGGCTATGGCTACACCTTC CSSQEGGYGYTF TRBV29-1*01 TRBJ1-2*01 10.0 532.0 _CSSQEGGYGYTF 11 1906 EBV-BLMF1 EBV 0.77 2531 NEG 113 1793 11 EBV BLMF1 GLCTLVAML effector T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*02:01 B2M MHCI -3611 chip0420_551009 8.65 13.83 Chip1 T1D_1 T1D _ 6746 2401 M1 FLU 0.47 1250 M1 116 2285 11 InfluenzaA M1 GILGFVFTL effector T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*02:01 B2M MHCI -3612 chip0420_397201 5.0 11.18 Chip1 T1D_2 T1D TGTGCAGGAGCTCTCGATAACTATGGTCAGAATTTTGTCTTT CAGALDNYGQNFVF TRAV27*01 TRAJ26*01 37.0 2027.0 CAGALDNYGQNFVF_ 1 4073 PGT-178 PGT 0.95 1480 PGT-178 103 3970 6 HomoSapiens PGT LLAGIGTVPI central memory T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*02:01 B2M MHCI -3613 chip0420_433059 -3.33 13.82 Chip1 T1D_1 T1D TGCGCAGCAAGTATTGGGGCCCAGTTCTATTTT CAASIGAQFYF TRAV13-1*01 TRAJ49*01 2.0 252.0 CAASIGAQFYF_ 1 3280 INS-2-11 INS 1.0 5 INS-2-11 109 3171 1 HomoSapiens INS ALWMRLLPLL Naive T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*02:01 B2M MHCI -3614 chip0420_399740 9.71 9.25 Chip1 T1D_1 T1D TGTGCCAGCAGCCACTTATTAGGGACAGGTTTTGGCTACACCTTC CASSHLLGTGFGYTF TRBV3-1*01 TRBJ1-2*01 20.0 1079.0 _CASSHLLGTGFGYTF 6 4797 EBV-BRLF1 EBV 0.97 1264 EBV-BRLF1 111 4686 8 EBV BRLF1 YVLDHLIVV effector memory T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*02:01 B2M MHCI -3615 chip0420_170221 11.83 7.14 Chip1 T1D_2 T1D TGTGCCAGCAGTGCCCTATTGGGGGGCGCCTATGGCTACACCTTC CASSALLGGAYGYTF TRBV27*01 TRBJ1-2*01 55.0 3694.0 _CASSALLGGAYGYTF 6 4038 EBV-BRLF1 EBV 0.92 1264 NEG 125 3913 10 EBV BRLF1 YVLDHLIVV effector memory T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*02:01 B2M MHCI -3616 chip0420_850205 -3.22 12.11 Chip1 T1D_3 T1D TGCAGTGCTAGCGCAGGATGGAGAGGCGTAACCTACGAGCAGTACTTC CSASAGWRGVTYEQYF TRBV20-1*01 TRBJ2-7*01 3.0 77.0 _CSASAGWRGVTYEQYF 1 3347 G6PC2-NLI-9 IGRP 0.58 7 G6PC2-NLI-9 94 3253 1 HomoSapiens G6PC2 NLIFKWKSI Naive T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-B*08:01 B2M MHCI -3617 chip0420_695545 6.08 12.5 Chip1 T1D_1 T1D TGTGCTTTCATGATAGGCGCTGGTGGTACTAGCTATGGAAAGCTGACATTT CAFMIGAGGTSYGKLTF TRAV38-1*01 TRAJ52*01 43.0 2033.0 CAFMIGAGGTSYGKLTF_ 1 4766 M1 FLU 0.97 1250 M1 105 4661 7 InfluenzaA M1 GILGFVFTL transitional T cells between effector and memory populations PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*02:01 B2M MHCI -3618 chip0420_694893 14.59 8.92 Chip1 T1D_1 T1D _ 6746 2569 EBV-BRLF1 EBV 0.79 1264 EBV-BRLF1 114 2455 12 EBV BRLF1 YVLDHLIVV effector T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*02:01 B2M MHCI -3619 chip0420_520074 11.17 11.98 Chip1 T1D_1 T1D TGTGCCAGCAGTGACGGTCGGGTCCACCCGGGGACCCAGTACTTC CASSDGRVHPGTQYF TRBV2*01 TRBJ2-5*01 30.0 1691.0 _CASSDGRVHPGTQYF 24 4240 EBV-BLMF1 EBV 0.62 2531 NEG 116 4124 9 EBV BLMF1 GLCTLVAML effector memory T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*02:01 B2M MHCI -3620 chip0420_260817 8.55 12.16 Chip1 T1D_2 T1D TGCAGCGTGGGGACAGGGGGAACTAATGAAAAACTGTTTTTT CSVGTGGTNEKLFF TRBV29-1*01 TRBJ1-4*01 106.0 5667.0 _CSVGTGGTNEKLFF 638 2593 EBV-BLMF1 EBV 0.86 2531 NEG 123 2470 7 EBV BLMF1 GLCTLVAML transitional T cells between effector and memory populations PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*02:01 B2M MHCI -3621 chip0420_547118 11.77 13.06 Chip1 T1D_2 T1D TGCAGCGTTGGGGGCAGCTTCTATGGCTACACCTTC CSVGGSFYGYTF TRBV29-1*01 TRBJ1-2*01 29.0 2041.0 _CSVGGSFYGYTF 42 1553 EBV-BLMF1 EBV 0.8 2531 NEG 113 1440 11 EBV BLMF1 GLCTLVAML effector T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*02:01 B2M MHCI -3622 chip0420_519044 12.15 9.28 Chip1 T1D_2 T1D TGCAGCGTGGGGACAGGGGGAACTAATGAAAAACTGTTTTTT CSVGTGGTNEKLFF TRBV29-1*01 TRBJ1-4*01 105.0 5806.0 _CSVGTGGTNEKLFF 638 2895 EBV-BLMF1 EBV 0.67 2531 NEG 121 2774 10 EBV BLMF1 GLCTLVAML effector memory T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*02:01 B2M MHCI -3623 chip0420_247965 8.46 9.15 Chip1 T1D_3 T1D TGTGCTTTCATGAAGCCTCTGAGGGTAATGCCAGACTCATGTTT CAFMKPLa?gGNARLMF TRAV38-1*01 TRAJ31*01 1.0 19.0 CAFMKPLa?gGNARLMF_ 1 6415 BZLF1-190-197 EBV 0.76 2156 BZLF1-190-197 111 6304 8 EBV BZLF1 RAKFKQLL effector memory T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-B*08:01 B2M MHCI -3624 chip0420_625214 9.03 8.84 Chip1 T1D_2 T1D TGTGCCTGGAGAGGGGAACCCTCCTACAATGAGCAGTTCTTC CAWRGEPSYNEQFF TRBV30*01 TRBJ2-1*01 42.0 2152.0 _CAWRGEPSYNEQFF 3 3637 EBV-BRLF1 EBV 0.98 1264 EBV-BRLF1 123 3514 8 EBV BRLF1 YVLDHLIVV effector memory T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*02:01 B2M MHCI -3625 chip0420_599915 15.21 9.05 Chip1 T1D_1 T1D TGCGGCACAGAGGAACCTAACGACTACAAGCTCAGCCTT CGTEEPNDYKLSL TRAV30*01 TRAJ20*01 36.0 2142.0 TGTGCCAGCAGCACGGGACAGCTATCGAACACCGGGGAGCTGTTTTTT CASSTGQLSNTGELFF TRBV9*01 TRBJ2-2*01 48.0 2114.0 CGTEEPNDYKLSL_CASSTGQLSNTGELFF 1 3550 EBV-BLMF1 EBV 0.54 2531 EBV-BLMF1 127 3423 12 EBV BLMF1 GLCTLVAML effector T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*02:01 B2M MHCI -3626 chip0420_517403 10.88 7.85 Chip1 T1D_1 T1D TGTGTGGTGAACGTTACCTACAACTTCAACAAATTTTACTTT CVVNVTYNFNKFYF TRAV12-1*01 TRAJ21*01 47.0 2154.0 CVVNVTYNFNKFYF_ 9 2181 EBV-BLMF1 EBV 0.45 2531 NEG 111 2070 10 EBV BLMF1 GLCTLVAML effector memory T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*02:01 B2M MHCI -3627 chip0420_299892 -4.06 8.27 Chip1 T1D_1 T1D TGTGCCAGCCAAGTCGGGACAGCGGCCTACGAGCAGTACTTC CASQVGTAAYEQYF TRBV2*01 TRBJ2-7*01 7.0 438.0 _CASQVGTAAYEQYF 1 6000 MART1-ALA MART1 0.7 269 MART1-ALA 115 5885 2 HomoSapiens MART1 ALAGIGILTV Naive T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*02:01 B2M MHCI -3628 chip0420_67545 9.67 9.65 Chip1 T1D_2 T1D TGCGCCAGCAGGATGGGGGCCGGGGATACGCAGTATTTT CASRMGAGDTQYF TRBV10-2*01 TRBJ2-3*01 71.0 4351.0 _CASRMGAGDTQYF 90 3907 EBV-BLMF1 EBV 0.62 2531 NEG 118 3789 9 EBV BLMF1 GLCTLVAML effector memory T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*02:01 B2M MHCI -3629 chip0420_776066 12.95 8.42 Chip1 T1D_1 T1D _ 6746 2289 EBV-BLMF1 EBV 1.0 2531 NEG 102 2187 10 EBV BLMF1 GLCTLVAML effector memory T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*02:01 B2M MHCI -3630 chip0420_486 15.51 9.07 Chip1 T1D_1 T1D _ 6746 3465 EBV-BLMF1 EBV 0.81 2531 EBV-BLMF1 109 3356 12 EBV BLMF1 GLCTLVAML effector T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*02:01 B2M MHCI -3631 chip0420_484926 -3.06 12.69 Chip1 T1D_1 T1D TGCGCCAGCAGTGAGTCGAGCCGGACAGGGATCCCTGAAGCTTTCTTT CASSESSRTGIPEAFF TRBV10-2*01 TRBJ1-1*01 5.0 127.0 _CASSESSRTGIPEAFF 1 3602 PGT-178 PGT 0.61 1480 PGT-178 111 3491 1 HomoSapiens PGT LLAGIGTVPI Naive T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*02:01 B2M MHCI -3632 chip0420_25498 6.12 10.12 Chip1 T1D_2 T1D _ 6746 3505 EBV-LMP2-FLY EBV 0.78 355 EBV-LMP2-FLY 114 3391 6 EBV LMP2 FLYALALLL central memory T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*02:01 B2M MHCI -3633 chip0420_751740 10.85 9.74 Chip1 T1D_2 T1D TGCAGCGTTGGGGGCAGCTTCTATGGCTACACCTTC CSVGGSFYGYTF TRBV29-1*01 TRBJ1-2*01 48.0 3729.0 _CSVGGSFYGYTF 42 3392 EBV-BLMF1 EBV 0.9 2531 NEG 118 3274 9 EBV BLMF1 GLCTLVAML effector memory T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*02:01 B2M MHCI -3634 chip0420_566980 7.37 12.24 Chip1 T1D_3 T1D _ 6746 4181 NP140-148 FLU 0.71 102 NEG 114 4067 7 InfluenzaA NP HSNLNDATY transitional T cells between effector and memory populations PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*01:01 B2M MHCI -3635 chip0420_432087 4.95 11.91 Chip1 T1D_2 T1D GGTGCCAGCAGCTACCTAGCGGGCGGTAACGCGCACACCGAGGAACTGTTTTCT GASSYLAGGNAHTEELFS TRBV6-2*01,TRBV6-3*01 TRBJ2-2*01 2.0 54.0 _GASSYLAGGNAHTEELFS 1 3354 INS-6-16 INS 0.89 20 INS-6-16 107 3247 6 HomoSapiens INS RLLPLLALLAL central memory T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*02:01 B2M MHCI -3636 chip0420_585919 -3.8 12.85 Chip1 T1D_2 T1D TGTGCCAGCAGCTTAGGACGGGTGCCTCAGGGTGGCTACACCTTC CASSLGRVPQGGYTF TRBV13*01 TRBJ1-2*01 24.0 1195.0 _CASSLGRVPQGGYTF 1 3417 PGT-178 PGT 0.61 1480 PGT-178 120 3297 1 HomoSapiens PGT LLAGIGTVPI Naive T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*02:01 B2M MHCI -3637 chip0420_101111 -3.39 13.15 Chip1 healthy_1 healthy _ 6746 3410 ZNT8-186-194 ZNT8 0.9 22 NEG 89 3321 1 HomoSapiens ZNT8 VAANIVLTV Naive T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*02:01 B2M MHCI -3638 chip0420_676522 -2.15 9.71 Chip1 healthy_1 healthy TGTGCAATGAGCTGGGCAATATCTAACTTTGGAAATGCGCACTTAACCTTT CAMSWAISNFGNAHLTF TRAV12-3*01 TRAJ48*01 64.0 1599.0 CAMSWAISNFGNAHLTF_ 1 5355 PGT-178 PGT 0.95 1480 PGT-178 104 5251 3 HomoSapiens PGT LLAGIGTVPI Naive T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*02:01 B2M MHCI -3639 chip0420_643626 -3.14 8.35 Chip1 T1D_1 T1D _ 6746 4704 PGT-178 PGT 0.76 1480 PGT-178 108 4596 2 HomoSapiens PGT LLAGIGTVPI Naive T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*02:01 B2M MHCI -3640 chip0420_416501 9.99 11.31 Chip1 T1D_2 T1D TGCGCCAGCAGGATGGGGGCCGGGGATACGCAGTATTTT CASRMGAGDTQYF TRBV10-2*01 TRBJ2-3*01 20.0 1071.0 _CASRMGAGDTQYF 90 2408 EBV-BLMF1 EBV 0.8 2531 NEG 152 2256 9 EBV BLMF1 GLCTLVAML effector memory T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*02:01 B2M MHCI -3641 chip0420_350544 11.62 7.97 Chip1 T1D_2 T1D TGTGCCAGCAGCTCGGGACTAGTCGCCCCCGGGGAGCTGTTTTTT CASSSGLVAPGELFF TRBV2*01 TRBJ2-2*01 31.0 1106.0 _CASSSGLVAPGELFF 133 3730 EBV-BLMF1 EBV 0.86 2531 NEG 119 3611 10 EBV BLMF1 GLCTLVAML effector memory T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*02:01 B2M MHCI -3642 chip0420_307769 12.42 9.74 Chip1 T1D_1 T1D TATGCCAGCAGCCAAAGCCCGGGTGGTACGCAGTATTTT YASSQSPGGTQYF TRBV14*01 TRBJ2-3*01 1.0 35.0 _YASSQSPGGTQYF 1 3218 EBV-BLMF1 EBV 0.57 2531 NEG 124 3094 8 EBV BLMF1 GLCTLVAML effector memory T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*02:01 B2M MHCI -3643 chip0420_692675 6.08 13.14 Chip1 T1D_1 T1D _ 6746 5114 M1 FLU 0.95 1250 M1 113 5001 7 InfluenzaA M1 GILGFVFTL transitional T cells between effector and memory populations PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*02:01 B2M MHCI -3644 chip0420_435796 -1.11 7.23 Chip1 T1D_1 T1D TGTGCCAGCAGCTTACCGGACAGGGGGACCTACGAGCAGTACTTC CASSLPDRGTYEQYF TRBV7-9*01 TRBJ2-7*01 34.0 1823.0 _CASSLPDRGTYEQYF 1 7091 IGRP-265-273 IGRP 0.52 34 IGRP-265-273 110 6981 3 HomoSapiens IGRP VLFGLGFAI Naive T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*02:01 B2M MHCI -3645 chip0420_122354 -0.97 7.49 Chip1 T1D_1 T1D TGTGCCAGCAGTTTAACCTTCGGCGGGGGGGGGACAGATACGCAGTATTTT CASSLTFGGGGTDTQYF TRBV28*01 TRBJ2-3*01 20.0 1018.0 _CASSLTFGGGGTDTQYF 1 6286 PGT-178 PGT 0.66 1480 PGT-178 100 6186 3 HomoSapiens PGT LLAGIGTVPI Naive T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*02:01 B2M MHCI -3646 chip0420_876528 -3.64 9.79 Chip1 T1D_1 T1D TGTGCCAGTAGTATAGGCACCGGGACTAGCGACCACAATGAGCAGTTCTTC CASSIGTGTSDHNEQFF TRBV19*01 TRBJ2-1*01 32.0 1994.0 _CASSIGTGTSDHNEQFF 1 5059 PGT-178 PGT 0.58 1480 PGT-178 106 4953 2 HomoSapiens PGT LLAGIGTVPI Naive T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*02:01 B2M MHCI -3647 chip0420_741805 7.6 13.8 Chip1 T1D_1 T1D TGTGCTGTGAGTGATCGGGCTGGAGGCTTCGAAACTCTCTTT CAVSDRAGGFETLF TRAV8-4*01 TRAJ9*01 36.0 2197.0 CAVSDRAGGFETLF_ 1 3103 M1 FLU 0.62 1250 NEG 110 2993 7 InfluenzaA M1 GILGFVFTL transitional T cells between effector and memory populations PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*02:01 B2M MHCI -3648 chip0420_563029 11.23 7.94 Chip1 T1D_2 T1D TGCGCCAGCAGAGCGGGAGCCGGGGATACGCAGTATTTT CASRAGAGDTQYF TRBV10-2*01 TRBJ2-3*01 1.0 76.0 _CASRAGAGDTQYF 59 2673 EBV-BLMF1 EBV 1.0 2531 NEG 124 2549 10 EBV BLMF1 GLCTLVAML effector memory T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*02:01 B2M MHCI -3649 chip0420_176570 10.87 12.08 Chip1 T1D_2 T1D TGTGCCGTGAAGGACACCGACAAGCTCATCTTT CAVKDTDKLIF TRAV8-1*01 TRAJ34*01 18.0 2020.0 TGTGCCTGGAGTGTACAGCTAGCGGGAGTAGACGAGCAGTACTTC CAWSVQLAGVDEQYF TRBV30*01 TRBJ2-7*01 1.0 20.0 CAVKDTDKLIF_CAWSVQLAGVDEQYF 9 2630 EBV-BRLF1 EBV 1.0 1264 NEG 121 2509 9 EBV BRLF1 YVLDHLIVV effector memory T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*02:01 B2M MHCI -3650 chip0420_838429 7.31 14.01 Chip1 healthy_1 healthy TGTGCAGGAGCAGCCGGGAGGCGGACCTGACGGCCTCCCCTTT CAGAAGR??cGPDGLPF TRAV27*01 TRAJ45*01 38.0 1927.0 CAGAAGR??cGPDGLPF_ 1 2250 M1 FLU 1.0 1250 NEG 121 2129 7 InfluenzaA M1 GILGFVFTL transitional T cells between effector and memory populations PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*02:01 B2M MHCI -3651 chip0420_810964 -4.22 9.75 Chip1 healthy_1 healthy _ 6746 4336 PGT-178 PGT 0.73 1480 PGT-178 105 4231 4 HomoSapiens PGT LLAGIGTVPI Naive T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*02:01 B2M MHCI -3652 chip0420_355188 6.98 10.62 Chip1 T1D_1 T1D _ 6746 5224 M1 FLU 0.86 1250 NEG 131 5093 7 InfluenzaA M1 GILGFVFTL transitional T cells between effector and memory populations PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*02:01 B2M MHCI -3653 chip0420_197626 12.41 7.04 Chip1 T1D_1 T1D TGTGCCGTGACGGACACCGACAAGCTCATCTTG CAVTDTDKLIL TRAV8-1*01 TRAJ34*01 2.0 101.0 TGCAGTGCTGCCGACCAAACCTACAATGAGCAGTTCTTC CSAADQTYNEQFF TRBV20-1*01 TRBJ2-1*01 16.0 1482.0 CAVTDTDKLIL_CSAADQTYNEQFF 1 3584 EBV-BRLF1 EBV 0.91 1264 EBV-BRLF1 102 3482 10 EBV BRLF1 YVLDHLIVV effector memory T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*02:01 B2M MHCI -3654 chip0420_553486 -1.34 7.03 Chip1 T1D_3 T1D _ 6746 5773 BZLF1-190-197 EBV 0.47 2156 BZLF1-190-197 124 5649 3 EBV BZLF1 RAKFKQLL Naive T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-B*08:01 B2M MHCI -3655 chip0420_6680 12.04 7.86 Chip1 T1D_1 T1D TGTGCCAGCAGTTCGGGACAGGTACTTCCCAATGAGCAGTTCTTC CASSSGQVLPNEQFF TRBV2*01 TRBJ2-1*01 19.0 1167.0 _CASSSGQVLPNEQFF 61 2987 EBV-BLMF1 EBV 0.62 2531 NEG 125 2862 10 EBV BLMF1 GLCTLVAML effector memory T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*02:01 B2M MHCI -3656 chip0420_524747 12.18 7.21 Chip1 T1D_2 T1D TGTGCAGAGAGTACTTCGGGAGGAAAGCTTATCTTC CAESTSGGKLIF TRAV5*01 TRAJ23*01 26.0 2058.0 TGCAGCGTGGGGACAGGGGGAACTAATGAAAAACTGTTTTTT CSVGTGGTNEKLFF TRBV29-1*01 TRBJ1-4*01 51.0 2665.0 CAESTSGGKLIF_CSVGTGGTNEKLFF 107 3915 EBV-BLMF1 EBV 0.64 2531 NEG 111 3804 10 EBV BLMF1 GLCTLVAML effector memory T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*02:01 B2M MHCI -3657 chip0420_237558 6.01 13.57 Chip1 T1D_1 T1D TGTGCTGTGCCCCTGGGGGGTTTTCTGGTGGCTACAATAAGCTGATTTTT CAVPLGGFc?tGGYNKLIF TRAV20*01 TRAJ4*01 61.0 2262.0 CAVPLGGFc?tGGYNKLIF_ 2 3864 M1 FLU 0.68 1250 M1 95 3769 7 InfluenzaA M1 GILGFVFTL transitional T cells between effector and memory populations PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*02:01 B2M MHCI -3658 chip0420_214753 11.83 8.58 Chip1 T1D_2 T1D TGTGCAGAGAGTACTTCGAGAGGAAAGCTTATCTTC CAESTSRGKLIF TRAV5*01 TRAJ23*01 7.0 505.0 TGCAGCGTGGGGACAGGGGGAACTAATGAAAAACTGTTTTTT CSVGTGGTNEKLFF TRBV29-1*01 TRBJ1-4*01 135.0 7627.0 CAESTSRGKLIF_CSVGTGGTNEKLFF 1 3459 EBV-BLMF1 EBV 0.71 2531 NEG 134 3325 10 EBV BLMF1 GLCTLVAML effector memory T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*02:01 B2M MHCI -3659 chip0420_714401 8.16 13.71 Chip1 T1D_1 T1D _ 6746 2064 M1 FLU 0.67 1250 NEG 113 1951 7 InfluenzaA M1 GILGFVFTL transitional T cells between effector and memory populations PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*02:01 B2M MHCI -3660 chip0420_672558 10.09 9.86 Chip1 T1D_1 T1D TGTGCCAGTAGGGCCTTGTTGGGATCCAATCAGCCCCAGCATTTT CASRALLGSNQPQHF TRBV19*01 TRBJ1-5*01 38.0 2002.0 _CASRALLGSNQPQHF 8 2476 EBV-BRLF1 EBV 1.0 1264 EBV-BRLF1 136 2340 9 EBV BRLF1 YVLDHLIVV effector memory T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*02:01 B2M MHCI -3661 chip0420_400279 10.35 11.03 Chip1 T1D_2 T1D TGTGCCAGCAGCAGAAGGACCCTAAACTCTGGGGCCAACGTCCTGACTTTC CASSRRTLNSGANVLTF TRBV13*01 TRBJ2-6*01 54.0 2324.0 _CASSRRTLNSGANVLTF 9 3967 EBV-BRLF1 EBV 0.91 1264 EBV-BRLF1 126 3841 9 EBV BRLF1 YVLDHLIVV effector memory T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*02:01 B2M MHCI -3662 chip0420_79315 10.38 10.24 Chip1 healthy_1 healthy TGCAGTGCTAGCGCTCGAACTGGGAATGGCTACACCTTC CSASARTGNGYTF TRBV20-1*01 TRBJ1-2*01 21.0 764.0 _CSASARTGNGYTF 1 3933 EBV-BLMF1 EBV 0.79 2531 EBV-BLMF1 112 3821 9 EBV BLMF1 GLCTLVAML effector memory T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*02:01 B2M MHCI -3663 chip0420_881427 6.32 14.34 Chip1 T1D_2 T1D TGTGCAGCAAGTCGGGTAACAATGACATGCGCTTT CAASRgt?NNDMRF TRAV13-1*01 TRAJ43*01 3.0 437.0 TGTGCCAGTAGTGCGGGTTCCTATGGCTACACCTTC CASSAGSYGYTF TRBV19*01 TRBJ1-2*01 19.0 1062.0 CAASRgt?NNDMRF_CASSAGSYGYTF 1 3108 M1 FLU 0.93 1250 M1 111 2997 7 InfluenzaA M1 GILGFVFTL transitional T cells between effector and memory populations PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*02:01 B2M MHCI -3664 chip0420_606816 12.49 9.56 Chip1 T1D_1 T1D _ 6746 2765 EBV-BLMF1 EBV 1.0 2531 NEG 114 2651 10 EBV BLMF1 GLCTLVAML effector memory T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*02:01 B2M MHCI -3665 chip0420_459323 12.45 11.33 Chip1 T1D_1 T1D _ 6746 2103 EBV-BLMF1 EBV 0.8 2531 NEG 112 1991 9 EBV BLMF1 GLCTLVAML effector memory T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*02:01 B2M MHCI -3666 chip0420_6132 15.01 10.33 Chip1 T1D_1 T1D _ 6746 3129 EBV-BLMF1 EBV 0.8 2531 NEG 96 3033 12 EBV BLMF1 GLCTLVAML effector T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*02:01 B2M MHCI -3667 chip0420_839694 15.99 11.59 Chip1 T1D_2 T1D TGCAGCGTGGGGACAGGGGGAACTAATGAAAAACTGTTTTTT CSVGTGGTNEKLFF TRBV29-1*01 TRBJ1-4*01 157.0 7288.0 _CSVGTGGTNEKLFF 638 1978 EBV-BLMF1 EBV 0.5 2531 NEG 116 1862 12 EBV BLMF1 GLCTLVAML effector T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*02:01 B2M MHCI -3668 chip0420_552834 10.86 9.79 Chip1 T1D_1 T1D _ 6746 2727 EBV-BLMF1 EBV 0.5 2531 NEG 108 2619 9 EBV BLMF1 GLCTLVAML effector memory T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*02:01 B2M MHCI -3669 chip0420_149286 6.39 12.93 Chip1 healthy_1 healthy _ 6746 3912 M1 FLU 0.54 1250 M1 87 3825 7 InfluenzaA M1 GILGFVFTL transitional T cells between effector and memory populations PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*02:01 B2M MHCI -3670 chip0420_857930 7.99 13.29 Chip1 T1D_3 T1D _ 6746 2807 NP44-52 FLU 0.9 474 NP44-52 110 2697 7 InfluenzaA NP CTELKLSDY transitional T cells between effector and memory populations PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*01:01 B2M MHCI -3671 chip0420_531808 15.17 9.92 Chip1 T1D_1 T1D _ 6746 2165 EBV-BLMF1 EBV 1.0 2531 NEG 113 2052 12 EBV BLMF1 GLCTLVAML effector T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*02:01 B2M MHCI -3672 chip0420_277062 -2.39 13.52 Chip1 T1D_1 T1D TGTGCCAGCAGCCCGGCCAGGGGTTTACCTGAAGCTTTCTTT CASSPARGLPEAFF TRAV36/DV7*01 TRAJ40*01 2.0 16.0 TGTGCCAGCAGCCCGGACAGGGGTTTACCTGAAGCTTTCTTT CASSPDRGLPEAFF TRBV7-9*01 TRBJ1-1*01 57.0 3294.0 CASSPARGLPEAFF_CASSPDRGLPEAFF 1 3838 PGT-178 PGT 0.83 1480 PGT-178 97 3741 1 HomoSapiens PGT LLAGIGTVPI Naive T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*02:01 B2M MHCI -3673 chip0420_267506 8.89 10.4 Chip1 healthy_1 healthy _ 6746 3181 EBV-BRLF1 EBV 0.97 1264 EBV-BRLF1 143 3038 8 EBV BRLF1 YVLDHLIVV effector memory T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*02:01 B2M MHCI -3674 chip0420_28601 10.0 7.27 Chip1 T1D_2 T1D TGTGCCGTGAAGGACACCGACAAGCTCATCTTT CAVKDTDKLIF TRAV8-1*01 TRAJ34*01 1.0 106.0 CTGTGCCAGCCGCCCCGGCGGGGCGGGAGCCGCAGATACGCAGTATTTT LCQPPRRG??gGAADTQYF TRBV4-2*01 TRBJ2-3*01 17.0 582.0 CAVKDTDKLIF_LCQPPRRG??gGAADTQYF 1 4421 EBV-BRLF1 EBV 0.92 1264 EBV-BRLF1 122 4299 10 EBV BRLF1 YVLDHLIVV effector memory T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*02:01 B2M MHCI -3675 chip0420_746865 13.27 7.93 Chip1 T1D_2 T1D TGTGTGGTGAACGGCAGGGATAGCCGCTATAAATTGATCTTC CVVNGRDSRYKLIF TRAV12-1*01 TRAJ12*01 5.0 174.0 CVVNGRDSRYKLIF_ 1 2721 EBV-BLMF1 EBV 0.5 2531 NEG 133 2588 10 EBV BLMF1 GLCTLVAML effector memory T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*02:01 B2M MHCI -3676 chip0420_186427 14.61 13.13 Chip1 healthy_1 healthy TGTGCTTATAGGAGCCCGCCCTCCTCTGAAAAGCTGGTCTTT CAYRSPPSSEKLVF TRAV38-2/DV8*01 TRAJ57*01 1.0 15.0 TGCAGCGTGGGGACAGGGGGAACTAATGAAAAACTGTTTTTT CSVGTGGTNEKLFF TRBV29-1*01 TRBJ1-4*01 9.0 436.0 CAYRSPPSSEKLVF_CSVGTGGTNEKLFF 2 1817 EBV-BRLF1 EBV 0.88 1264 EBV-BRLF1 111 1706 12 EBV BRLF1 YVLDHLIVV effector T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*02:01 B2M MHCI -3677 chip0420_309786 10.27 7.31 Chip1 T1D_1 T1D TGTGCCAGCAGTGAGAGGTTGGGGGGCGATGGCTACACCTTC CASSERLGGDGYTF TRBV6-4*01 TRBJ1-2*01 33.0 2017.0 _CASSERLGGDGYTF 1 4736 PGT-178 PGT 0.72 1480 PGT-178 110 4626 10 HomoSapiens PGT LLAGIGTVPI effector memory T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*02:01 B2M MHCI -3678 chip0420_856521 6.45 11.59 Chip1 T1D_1 T1D _ 6746 4867 M1 FLU 0.86 1250 M1 123 4744 7 InfluenzaA M1 GILGFVFTL transitional T cells between effector and memory populations PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*02:01 B2M MHCI -3679 chip0420_881472 -2.66 9.39 Chip1 T1D_2 T1D TGTGCCAGCAGTGAGACTAGCGGATACAATGAGCAGTTCTTC CASSETSGYNEQFF TRBV2*01 TRBJ2-1*01 18.0 1393.0 _CASSETSGYNEQFF 1 5359 PGT-178 PGT 0.62 1480 PGT-178 106 5253 3 HomoSapiens PGT LLAGIGTVPI Naive T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*02:01 B2M MHCI -3680 chip0420_634087 8.71 13.63 Chip1 T1D_1 T1D _ 6746 2544 M1 FLU 0.67 1250 M1 106 2438 11 InfluenzaA M1 GILGFVFTL effector T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*02:01 B2M MHCI -3681 chip0420_345531 13.17 12.03 Chip1 T1D_1 T1D TGTGCCACCCAACAGGGGCGGGCCAGTCAGCCCCAGCATTTT CATQQGRASQPQHF TRBV28*01 TRBJ1-5*01 70.0 3189.0 _CATQQGRASQPQHF 4 1991 EBV-BLMF1 EBV 0.75 2531 NEG 114 1877 11 EBV BLMF1 GLCTLVAML effector T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*02:01 B2M MHCI -3682 chip0420_557579 11.08 11.96 Chip1 T1D_2 T1D TGCGCCAGCAGTCAATCGAGAGGGTCGCTCTGGGATACGCAGTATTTT CASSQSRGSLWDTQYF TRBV4-3*01 TRBJ2-3*01 21.0 1011.0 _CASSQSRGSLWDTQYF 21 2108 EBV-BRLF1 EBV 0.98 1264 EBV-BRLF1 134 1974 9 EBV BRLF1 YVLDHLIVV effector memory T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*02:01 B2M MHCI -3683 chip0420_354127 -2.84 14.5 Chip1 T1D_1 T1D _ 6746 2668 MART1-ALA MART1 0.86 269 NEG 98 2570 1 HomoSapiens MART1 ALAGIGILTV Naive T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*02:01 B2M MHCI -3684 chip0420_63276 -1.91 11.15 Chip1 T1D_1 T1D _ 6746 4191 PGT-178 PGT 0.75 1480 PGT-178 100 4091 3 HomoSapiens PGT LLAGIGTVPI Naive T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*02:01 B2M MHCI -3685 chip0420_723882 9.42 8.9 Chip1 T1D_1 T1D _ 6746 3753 EBV-BRLF1 EBV 0.87 1264 EBV-BRLF1 115 3638 8 EBV BRLF1 YVLDHLIVV effector memory T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*02:01 B2M MHCI -3686 chip0420_115801 9.85 9.78 Chip1 T1D_1 T1D _ 6746 4744 EBV-BLMF1 EBV 0.64 2531 EBV-BLMF1 128 4616 9 EBV BLMF1 GLCTLVAML effector memory T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*02:01 B2M MHCI -3687 chip0420_27175 11.6 12.64 Chip1 T1D_2 T1D _ 6746 1837 EBV-BRLF1 EBV 0.79 1264 NEG 118 1719 11 EBV BRLF1 YVLDHLIVV effector T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*02:01 B2M MHCI -3688 chip0420_378651 -3.92 9.02 Chip1 T1D_1 T1D _ 6746 4772 CVB3-P3A CVB 0.5 77 NEG 108 4664 2 CoxsackievirusB P3A GIIYIIYKL Naive T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*02:01 B2M MHCI -3689 chip0420_709056 8.41 11.32 Chip1 T1D_2 T1D TGTGCCAGCAGTGATTACAATGAGCAGTTCTTC CASSDYNEQFF TRBV6-1*01 TRBJ2-1*01 7.0 258.0 _CASSDYNEQFF 1 4411 EBV-BRLF1 EBV 0.92 1264 EBV-BRLF1 120 4291 7 EBV BRLF1 YVLDHLIVV transitional T cells between effector and memory populations PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*02:01 B2M MHCI -3690 chip0420_379847 10.83 11.71 Chip1 T1D_1 T1D _ 6746 2845 EBV-BLMF1 EBV 0.6 2531 NEG 113 2732 9 EBV BLMF1 GLCTLVAML effector memory T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*02:01 B2M MHCI -3691 chip0420_677 10.63 12.36 Chip1 T1D_2 T1D TGTGTGGTGAACCCCCCCCACGACTACAAGCTCAGCTTT CVVNPPHDYKLSF TRAV12-1*01 TRAJ20*01 37.0 2329.0 TGTGCCAGCAGCGTAGGGGTTCTTAGCGCCGGGGAGCTGTTTTTT CASSVGVLSAGELFF TRBV9*01 TRBJ2-2*01 78.0 4621.0 CVVNPPHDYKLSF_CASSVGVLSAGELFF 4 2390 EBV-BLMF1 EBV 0.86 2531 NEG 124 2266 11 EBV BLMF1 GLCTLVAML effector T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*02:01 B2M MHCI -3692 chip0420_313455 11.51 10.8 Chip1 T1D_1 T1D TGTGCCGTGAATGCGCTCGACAAGCTCATCTTT CAVNALDKLIF TRAV8-1*01 TRAJ34*01 2.0 389.0 TGTGTGGTGAGCGCGGAAATTATGGTGGTGCTACAAACAAGCTCATCTTT CVVSAEIMg?tGATNKLIF TRAV10*01 TRAJ32*01 2.0 100.0 0.4 TGTGCCAGCAGTGAGGCATTTCTAGCGGACAATGAGCAGTTCTTC CASSEAFLADNEQFF TRBV6-4*01 TRBJ2-1*01 25.0 1590.0 CAVNALDKLIF_CASSEAFLADNEQFF 3 3957 EBV-BRLF1 EBV 0.59 1264 NEG 128 3829 9 EBV BRLF1 YVLDHLIVV effector memory T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*02:01 B2M MHCI -3693 chip0420_355452 7.74 11.73 Chip1 healthy_1 healthy TGTGCCAGTAGTATACTGTCCCAGCAGCCCCAGCATTTT CASSILSQQPQHF TRBV19*01 TRBJ1-5*01 29.0 2030.0 _CASSILSQQPQHF 1 4410 M1 FLU 1.0 1250 M1 101 4309 7 InfluenzaA M1 GILGFVFTL transitional T cells between effector and memory populations PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*02:01 B2M MHCI -3694 chip0420_112399 7.78 10.69 Chip1 T1D_2 T1D TGTGCCTGGAGTGTCCAGCTAGCGGGAGTAGACGAGCAGTACTTC CAWSVQLAGVDEQYF TRBV30*01 TRBJ2-7*01 2.0 212.0 _CAWSVQLAGVDEQYF 11 5841 EBV-BRLF1 EBV 0.92 1264 NEG 113 5728 7 EBV BRLF1 YVLDHLIVV transitional T cells between effector and memory populations PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*02:01 B2M MHCI -3695 chip0420_833613 13.95 8.19 Chip1 T1D_1 T1D TGCGGCACAGAGGAACCTAACGACTACAAGCTCAGCTTT CGTEEPNDYKLSF TRAV30*01 TRAJ20*01 16.0 1349.0 TGTGCCAGCAGCACGGGACAGCTATCGAACACCGGGGAGCTGTTTTTT CASSTGQLSNTGELFF TRBV9*01 TRBJ2-2*01 30.0 1445.0 CGTEEPNDYKLSF_CASSTGQLSNTGELFF 18 2465 EBV-BLMF1 EBV 0.64 2531 NEG 127 2338 10 EBV BLMF1 GLCTLVAML effector memory T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*02:01 B2M MHCI -3696 chip0420_277539 10.15 9.03 Chip1 T1D_1 T1D _ 6746 3185 EBV-BRLF1 EBV 0.86 1264 NEG 120 3065 8 EBV BRLF1 YVLDHLIVV effector memory T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*02:01 B2M MHCI -3697 chip0420_265792 12.22 10.44 Chip1 T1D_1 T1D _ 6746 3178 EBV-BLMF1 EBV 0.6 2531 NEG 116 3062 9 EBV BLMF1 GLCTLVAML effector memory T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*02:01 B2M MHCI -3698 chip0420_720940 15.64 11.73 Chip1 T1D_1 T1D _ 6746 1824 EBV-BLMF1 EBV 0.52 2531 NEG 123 1701 12 EBV BLMF1 GLCTLVAML effector T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*02:01 B2M MHCI -3699 chip0420_273559 11.27 12.59 Chip1 T1D_1 T1D _ 6746 2301 EBV-BLMF1 EBV 0.91 2531 NEG 148 2153 11 EBV BLMF1 GLCTLVAML effector T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*02:01 B2M MHCI -3700 chip0420_126307 11.66 9.5 Chip1 T1D_1 T1D TGTGCCAGCAGCCAAAGCCCGGGTGGTACGCAGTATTTT CASSQSPGGTQYF TRBV14*01 TRBJ2-3*01 2.0 88.0 _CASSQSPGGTQYF 94 3270 EBV-BLMF1 EBV 0.62 2531 NEG 128 3142 10 EBV BLMF1 GLCTLVAML effector memory T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*02:01 B2M MHCI -3701 chip0420_13453 15.62 10.6 Chip1 T1D_1 T1D TGCAGCGTCGGCTCCAGGGGAACTAATGAAAAACTGTTTTTT CSVGSRGTNEKLFF TRBV29-1*01 TRBJ1-4*01 67.0 3855.0 _CSVGSRGTNEKLFF 283 2359 EBV-BLMF1 EBV 0.5 2531 NEG 127 2232 12 EBV BLMF1 GLCTLVAML effector T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*02:01 B2M MHCI -3702 chip0420_639650 10.3 10.03 Chip1 T1D_2 T1D TGTGCCAGCAGAGGCTTGACAGGGGGCGCGTCCGAGCAGTACTTC CASRGLTGGASEQYF TRBV6-1*01 TRBJ2-7*01 7.0 303.0 _CASRGLTGGASEQYF 2 3795 EBV-BRLF1 EBV 1.0 1264 NEG 139 3656 9 EBV BRLF1 YVLDHLIVV effector memory T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*02:01 B2M MHCI -3703 chip0420_615193 10.89 12.48 Chip1 T1D_2 T1D TGTGCCAGCAGCCGACAGGGGGGGGAGGATGGCTGCACCTTC CASSRQGGEDGCTF TRBV6-1*01 TRBJ1-2*01 4.0 84.0 _CASSRQGGEDGCTF 1 2438 EBV-BRLF1 EBV 0.91 1264 NEG 125 2313 11 EBV BRLF1 YVLDHLIVV effector T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*02:01 B2M MHCI -3704 chip0420_49349 11.84 13.87 Chip1 T1D_1 T1D _ 6746 1569 EBV-BRLF1 EBV 0.5 1264 NEG 123 1446 11 EBV BRLF1 YVLDHLIVV effector T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*02:01 B2M MHCI -3705 chip0420_699772 12.0 9.89 Chip1 T1D_1 T1D TGTGCCATCAGTGAGGGGACGCTGAGCTCCTACAATGAGCAGTTCTTC CAISEGTLSSYNEQFF TRBV10-3*01 TRBJ2-1*01 32.0 1682.0 _CAISEGTLSSYNEQFF 7 4915 EBV-BRLF1 EBV 0.96 1264 EBV-BRLF1 130 4785 9 EBV BRLF1 YVLDHLIVV effector memory T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*02:01 B2M MHCI -3706 chip0420_555387 9.1 9.14 Chip1 T1D_3 T1D _ 6746 5247 BZLF1-190-197 EBV 0.71 2156 BZLF1-190-197 100 5147 8 EBV BZLF1 RAKFKQLL effector memory T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-B*08:01 B2M MHCI -3707 chip0420_857054 6.3 13.08 Chip1 healthy_1 healthy TGTGCAGGAGCAGCCGGGACGCGGTGCTGACGGACTCACCTTT CAGAAGT??cGADGLTF TRAV27*01 TRAJ45*01 55.0 1793.0 CAGAAGT??cGADGLTF_ 1 5112 M1 FLU 0.87 1250 M1 114 4998 7 InfluenzaA M1 GILGFVFTL transitional T cells between effector and memory populations PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*02:01 B2M MHCI -3708 chip0420_828574 -0.25 4.46 Chip1 T1D_1 T1D _ 6746 4740 PGT-178 PGT 0.69 1480 PGT-178 98 4642 5 HomoSapiens PGT LLAGIGTVPI natural killer-like T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*02:01 B2M MHCI -3709 chip0420_588116 -3.21 12.06 Chip1 T1D_3 T1D _ 6746 3810 NP380-388 FLU 0.71 60 NEG 102 3708 1 InfluenzaA NP ELRSRYWAI Naive T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-B*08:01 B2M MHCI -3710 chip0420_526054 10.75 7.72 Chip1 T1D_1 T1D TGTGCCAGCAGCCAAAGCCCGGGTGGTACGCAGTATTTT CASSQSPGGTQYF TRBV14*01 TRBJ2-3*01 1.0 81.0 _CASSQSPGGTQYF 94 4175 EBV-BLMF1 EBV 0.78 2531 NEG 116 4059 10 EBV BLMF1 GLCTLVAML effector memory T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*02:01 B2M MHCI -3711 chip0420_235294 -0.25 4.02 Chip1 T1D_1 T1D TGTGCCAGCAGCTTCCCTGAGGGACAGGGATTCTATGGCTACACCTTC CASSFPEGQGFYGYTF TRBV7-9*01 TRBJ1-2*01 10.0 460.0 _CASSFPEGQGFYGYTF 1 6077 HCV-K1S HCV 0.6 10 NEG 122 5955 5 HCV POL SLVALGINAV natural killer-like T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*02:01 B2M MHCI -3712 chip0420_22410 -3.64 9.64 Chip1 T1D_1 T1D _ 6746 5511 CVB3-P3A CVB 0.62 77 NEG 122 5389 2 CoxsackievirusB P3A GIIYIIYKL Naive T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*02:01 B2M MHCI -3713 chip0420_486596 9.76 9.63 Chip1 T1D_1 T1D TGCGCCAGCAGCCCGACCGATCTGAACACTGAAGCTTTCTTT CASSPTDLNTEAFF TRBV4-1*01 TRBJ1-1*01 2.0 89.0 _CASSPTDLNTEAFF 2 3138 EBV-BRLF1 EBV 0.76 1264 NEG 100 3038 9 EBV BRLF1 YVLDHLIVV effector memory T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*02:01 B2M MHCI -3714 chip0420_303294 12.04 8.71 Chip1 T1D_1 T1D TGTGCCGTGAGTGTCAATAACAATGACATGCGCTTT CAVSVNNNDMRF TRAV12-2*01 TRAJ43*01 1.0 10.0 CAVSVNNNDMRF_ 1 3034 GAD65-114-122 GAD65 0.47 63 GAD65-114-122 108 2926 10 HomoSapiens GAD65 VMNILLQYV effector memory T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*02:01 B2M MHCI -3715 chip0420_697405 14.76 9.32 Chip1 T1D_1 T1D TGTGTGGTGAACGGACGGGATAGCAGCTATAAATTGATCTTC CVVNGRDSSYKLIF TRAV12-1*01 TRAJ12*01 47.0 2159.0 CVVNGRDSSYKLIF_ 17 4008 EBV-BLMF1 EBV 0.5 2531 NEG 119 3889 12 EBV BLMF1 GLCTLVAML effector T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*02:01 B2M MHCI -3716 chip0420_631858 11.44 10.82 Chip1 T1D_2 T1D TGTGCTTCCCTAACCCCGGGGGCTTCCACGATAATCTTT CASLTPGASTIIF TRAV8-6*01 TRAJ3*01 17.0 1226.0 TGTGCCAGCAGCTCGGGACTAGTCGCCCCCGGGGAGCTGTTTTTT CASSSGLVAPGELFF TRBV2*01 TRBJ2-2*01 9.0 354.0 CASLTPGASTIIF_CASSSGLVAPGELFF 2 3905 EBV-BLMF1 EBV 0.8 2531 NEG 115 3790 9 EBV BLMF1 GLCTLVAML effector memory T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*02:01 B2M MHCI -3717 chip0420_355348 5.8 13.33 Chip1 T1D_1 T1D _ 6746 5976 M1 FLU 0.74 1250 M1 127 5849 7 InfluenzaA M1 GILGFVFTL transitional T cells between effector and memory populations PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*02:01 B2M MHCI -3718 chip0420_745693 10.73 11.12 Chip1 T1D_2 T1D TGCGCCAGCAGGATGGGGGCCGGGGATACGCAGTATTTT CASRMGAGDTQYF TRBV10-2*01 TRBJ2-3*01 15.0 690.0 _CASRMGAGDTQYF 90 3276 EBV-BLMF1 EBV 1.0 2531 NEG 106 3170 9 EBV BLMF1 GLCTLVAML effector memory T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*02:01 B2M MHCI -3719 chip0420_210118 10.41 10.48 Chip1 T1D_1 T1D TGTGCCAGCAGTTCGGGCCAGGTACTTCCCAATGAGCAGTTCTTC CASSSGQVLPNEQFF TRBV2*01 TRBJ2-1*01 30.0 1530.0 _CASSSGQVLPNEQFF 61 3473 EBV-BLMF1 EBV 1.0 2531 NEG 117 3356 9 EBV BLMF1 GLCTLVAML effector memory T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*02:01 B2M MHCI -3720 chip0420_787389 9.61 9.39 Chip1 T1D_1 T1D TGTGCCAGCAGCCAAAGCCCGGGTGATACGCAGTATTTT CASSQSPGDTQYF TRBV14*01 TRBJ2-3*01 3.0 85.0 _CASSQSPGDTQYF 1 3882 EBV-BLMF1 EBV 0.75 2531 NEG 122 3760 8 EBV BLMF1 GLCTLVAML effector memory T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*02:01 B2M MHCI -3721 chip0420_77599 7.91 13.44 Chip1 T1D_1 T1D _ 6746 3024 M1 FLU 0.68 1250 M1 103 2921 7 InfluenzaA M1 GILGFVFTL transitional T cells between effector and memory populations PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*02:01 B2M MHCI -3722 chip0420_194516 9.04 11.62 Chip1 T1D_2 T1D _ 6746 3157 EBV-BLMF1 EBV 0.8 2531 NEG 117 3040 7 EBV BLMF1 GLCTLVAML transitional T cells between effector and memory populations PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*02:01 B2M MHCI -3723 chip0420_475913 8.91 8.91 Chip1 T1D_1 T1D TGCAGCGTCGGCTCCAGGGGAACTAATGAAAAACTGTTTTTT CSVGSRGTNEKLFF TRBV29-1*01 TRBJ1-4*01 57.0 3099.0 _CSVGSRGTNEKLFF 283 3521 EBV-BLMF1 EBV 0.78 2531 NEG 123 3398 8 EBV BLMF1 GLCTLVAML effector memory T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*02:01 B2M MHCI -3724 chip0420_600447 6.64 12.5 Chip1 T1D_2 T1D TGTGCAGGGAATTATGGAGGAAGCCAAGGAAATCTCATCTTT CAGNYGGSQGNLIF TRAV25*01 TRAJ42*01 36.0 1875.0 TGTGCCAGTAGTACCCGGTCCACCGGGGAGCTGTTTTTT CASSTRSTGELFF TRBV19*01 TRBJ2-2*01 22.0 1376.0 CAGNYGGSQGNLIF_CASSTRSTGELFF 2 3513 M1 FLU 0.88 1250 NEG 103 3410 7 InfluenzaA M1 GILGFVFTL transitional T cells between effector and memory populations PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*02:01 B2M MHCI -3725 chip0420_575308 -2.8 9.54 Chip1 T1D_1 T1D _ 6746 4658 MART1-ALA MART1 0.54 269 NEG 105 4553 2 HomoSapiens MART1 ALAGIGILTV Naive T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*02:01 B2M MHCI -3726 chip0420_376134 5.22 9.19 Chip1 T1D_1 T1D TGTGCCAGCAGTATTCGAGCGGGAGGGGCCTACGAGCAGTACTTC CASSIRAGGAYEQYF TRBV28*01 TRBJ2-7*01 81.0 4661.0 _CASSIRAGGAYEQYF 3 3126 EBV-LMP1-1 EBV 0.81 237 NEG 102 3024 6 EBV LMP1 YLLEMLWRL central memory T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*02:01 B2M MHCI -3727 chip0420_682649 5.82 13.24 Chip1 T1D_1 T1D TGTGCCAGTAGTTCTGGGGCTTATGGCTACACCTTC CASSSGAYGYTF TRBV19*01 TRBJ1-2*01 17.0 830.0 _CASSSGAYGYTF 6 4211 M1 FLU 0.75 1250 M1 119 4092 7 InfluenzaA M1 GILGFVFTL transitional T cells between effector and memory populations PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*02:01 B2M MHCI -3728 chip0420_616247 -3.01 13.33 Chip1 T1D_1 T1D TGTGCTCTGAGTGAGTCTTCAGGAGGAAGCTACATACCTACATTT CALSESSGGSYIPTF TRAV19*01 TRAJ6*01 49.0 1970.0 TGTGCCAACAGCGGCTGGGGGGGACAGGGCACTACCAACACCGGGGAGCTGTTTTCT CANSGWGGQGTTNTGELFS TRBV13*01 TRBJ2-2*01 23.0 1004.0 CALSESSGGSYIPTF_CANSGWGGQGTTNTGELFS 1 3225 IGRP-152-160-WLI IGRP 0.88 27 IGRP-152-160-WLI 100 3125 1 HomoSapiens IGRP FLWSVFWLI Naive T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*02:01 B2M MHCI -3729 chip0420_592766 13.35 6.77 Chip1 T1D_1 T1D TGTGCCAGCAGCCAAAGCCCGGGTGGTACGCAGTATTTT CASSQSPGGTQYF TRBV14*01 TRBJ2-3*01 13.0 606.0 _CASSQSPGGTQYF 94 2791 EBV-BLMF1 EBV 0.67 2531 NEG 116 2675 10 EBV BLMF1 GLCTLVAML effector memory T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*02:01 B2M MHCI -3730 chip0420_257114 6.39 12.06 Chip1 healthy_1 healthy TGTGCCCGTTCCACAGGGTCCTATGGCTACACCTTC CARSTGSYGYTF TRBV19*01 TRBJ1-2*01 10.0 556.0 _CARSTGSYGYTF 1 6794 M1 FLU 0.87 1250 NEG 124 6670 7 InfluenzaA M1 GILGFVFTL transitional T cells between effector and memory populations PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*02:01 B2M MHCI -3731 chip0420_687212 12.98 10.81 Chip1 T1D_2 T1D TGTGCAGAGAGTACTTCGGGAGGCCCGCTTGTCCTC CAESTSGGPLVL TRAV5*01 TRAJ23*01 5.0 482.0 TGCAGCGTGGGGACAGGGGGAACTAATGAAAAACTGTTTTTT CSVGTGGTNEKLFF TRBV29-1*01 TRBJ1-4*01 177.0 8187.0 CAESTSGGPLVL_CSVGTGGTNEKLFF 1 2330 EBV-BLMF1 EBV 0.71 2531 NEG 114 2216 9 EBV BLMF1 GLCTLVAML effector memory T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*02:01 B2M MHCI -3732 chip0420_471087 -2.74 9.14 Chip1 T1D_1 T1D TGTGCCAGCAGCTTCGGACAGGGTGGGTATCAGCCCCAGCATTTT CASSFGQGGYQPQHF TRBV3-1*01 TRBJ1-5*01 1.0 11.0 _CASSFGQGGYQPQHF 1 5854 M1 FLU 1.0 1250 NEG 92 5762 2 InfluenzaA M1 GILGFVFTL Naive T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*02:01 B2M MHCI -3733 chip0420_25648 12.83 13.31 Chip1 T1D_1 T1D _ 6746 1231 EBV-BLMF1 EBV 1.0 2531 NEG 118 1113 11 EBV BLMF1 GLCTLVAML effector T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*02:01 B2M MHCI -3734 chip0420_688727 11.62 9.78 Chip1 T1D_2 T1D TGTGCCTTAGGAGGACTGACCTTT CALGGLTF TRAV8-1*01 TRAJ22*01 2.0 9.0 TGTGCCAGCAGCCCCTCGACTAGCGGGAGTGGGGAGACCCAGTACTTC CASSPSTSGSGETQYF TRBV3-1*01 TRBJ2-5*01 25.0 2038.0 CALGGLTF_CASSPSTSGSGETQYF 12 2896 EBV-BRLF1 EBV 0.95 1264 EBV-BRLF1 120 2776 9 EBV BRLF1 YVLDHLIVV effector memory T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*02:01 B2M MHCI -3735 chip0420_218304 9.21 10.29 Chip1 healthy_1 healthy TGTGCCAGCAGCCGAGGGACTAGCGGACCTGCCGGCTACGAGCAGTACTTC CASSRGTSGPAGYEQYF TRBV11-2*01 TRBJ2-7*01 2.0 35.0 _CASSRGTSGPAGYEQYF 1 3948 PGT-178 PGT 0.93 1480 NEG 113 3835 9 HomoSapiens PGT LLAGIGTVPI effector memory T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*02:01 B2M MHCI -3736 chip0420_489813 6.22 13.22 Chip1 T1D_1 T1D _ 6746 4725 M1 FLU 0.57 1250 M1 103 4622 7 InfluenzaA M1 GILGFVFTL transitional T cells between effector and memory populations PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*02:01 B2M MHCI -3737 chip0420_401892 6.24 12.33 Chip1 healthy_1 healthy _ 6746 4089 M1 FLU 0.76 1250 M1 124 3965 7 InfluenzaA M1 GILGFVFTL transitional T cells between effector and memory populations PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*02:01 B2M MHCI -3738 chip0420_362616 11.94 10.73 Chip1 T1D_1 T1D _ 6746 3682 EBV-BLMF1 EBV 1.0 2531 NEG 108 3574 9 EBV BLMF1 GLCTLVAML effector memory T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*02:01 B2M MHCI -3739 chip0420_159677 -2.55 15.03 Chip1 T1D_1 T1D TGTGCCAGCACTATTAACGAAAGAGCTTTCTTT CASTINERAFF TRBV6-2*01,TRBV6-3*01 TRBJ1-1*01 21.0 847.0 _CASTINERAFF 1 2180 PGT-178 PGT 0.58 1480 NEG 99 2081 1 HomoSapiens PGT LLAGIGTVPI Naive T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*02:01 B2M MHCI -3740 chip0420_828464 13.28 7.09 Chip1 T1D_1 T1D _ 6746 2589 EBV-BRLF1 EBV 1.0 1264 EBV-BRLF1 134 2455 10 EBV BRLF1 YVLDHLIVV effector memory T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*02:01 B2M MHCI -3741 chip0420_83838 -2.42 10.21 Chip1 healthy_2 healthy _ 6746 4175 HCV-A9N HCV 1.0 5 NEG 105 4070 3 HCV POL KLVALGINNV Naive T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*02:01 B2M MHCI -3742 chip0420_380862 7.08 13.52 Chip1 T1D_1 T1D _ 6746 2823 M1 FLU 0.88 1250 M1 107 2716 7 InfluenzaA M1 GILGFVFTL transitional T cells between effector and memory populations PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*02:01 B2M MHCI -3743 chip0420_66480 -4.35 11.08 Chip1 healthy_1 healthy TGTGCCAGCAGCCATGGGGGTTCGGGACCGTTGAGGACCCAGTACTTC CASSHGGSGPLRTQYF TRBV14*01 TRBJ2-5*01 6.0 238.0 _CASSHGGSGPLRTQYF 1 3537 PGT-178 PGT 0.57 1480 PGT-178 90 3447 1 HomoSapiens PGT LLAGIGTVPI Naive T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*02:01 B2M MHCI -3744 chip0420_214595 6.06 13.34 Chip1 T1D_1 T1D _ 6746 4226 M1 FLU 0.67 1250 NEG 110 4116 7 InfluenzaA M1 GILGFVFTL transitional T cells between effector and memory populations PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*02:01 B2M MHCI -3745 chip0420_162368 -3.62 10.27 Chip1 healthy_1 healthy TGTGCAATGACGCTCTCTAACTTTGGACTGCGCACTTACCCTTT CAMTLSNt?tWTAHLPF TRAV12-3*01 TRAJ48*01 54.0 2715.0 TGTGCCAGCAGTAGTGGGGGTACAGGAGGGGGTGACCATTACGAGCAGTACTTC CASSSGGTGGGDHYEQYF TRBV27*01 TRBJ2-7*01 38.0 1332.0 CAMTLSNt?tWTAHLPF_CASSSGGTGGGDHYEQYF 1 3678 PGT-178 PGT 0.7 1480 PGT-178 92 3586 2 HomoSapiens PGT LLAGIGTVPI Naive T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*02:01 B2M MHCI -3746 chip0420_747319 -0.48 6.39 Chip1 T1D_1 T1D TGTGCTGTGAGGGATCATCAAGCCAGGAAGCACACCTCTTGTCTTT CAVRDHQgc??caGSTPLVF TRAV8-4*01 TRAJ29*01 5.0 290.0 TGTGCCTCCCAAACCGGGGGGATACCTGGGGCCAACGTCCTGACTTTC CASQTGGIPGANVLTF TRBV19*01 TRBJ2-6*01 31.0 1822.0 CAVRDHQgc??caGSTPLVF_CASQTGGIPGANVLTF 1 7479 PGT-178 PGT 0.74 1480 PGT-178 116 7363 3 HomoSapiens PGT LLAGIGTVPI Naive T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*02:01 B2M MHCI -3747 chip0420_698328 7.16 14.31 Chip1 T1D_1 T1D _ 6746 1909 M1 FLU 0.62 1250 NEG 107 1802 7 InfluenzaA M1 GILGFVFTL transitional T cells between effector and memory populations PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*02:01 B2M MHCI -3748 chip0420_628295 15.87 11.77 Chip1 T1D_1 T1D _ 6746 1838 EBV-BRLF1 EBV 0.69 1264 EBV-BRLF1 122 1716 12 EBV BRLF1 YVLDHLIVV effector T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*02:01 B2M MHCI -3749 chip0420_253455 10.93 10.58 Chip1 T1D_1 T1D TGTGCCAGCAGCCCAGTTAGCGGGTCAACCTACGAGCAGTACTTC CASSPVSGSTYEQYF TRBV3-1*01 TRBJ2-7*01 50.0 2028.0 _CASSPVSGSTYEQYF 80 3187 EBV-BLMF1 EBV 1.0 2531 NEG 109 3078 9 EBV BLMF1 GLCTLVAML effector memory T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*02:01 B2M MHCI -3750 chip0420_628510 5.98 13.72 Chip1 T1D_1 T1D _ 6746 4863 M1 FLU 0.67 1250 NEG 122 4741 7 InfluenzaA M1 GILGFVFTL transitional T cells between effector and memory populations PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*02:01 B2M MHCI -3751 chip0420_157224 8.14 13.78 Chip1 healthy_1 healthy _ 6746 2835 M1 FLU 0.81 1250 M1 110 2725 7 InfluenzaA M1 GILGFVFTL transitional T cells between effector and memory populations PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*02:01 B2M MHCI -3752 chip0420_839764 7.12 10.62 Chip1 T1D_3 T1D TGTGCCAGCAGCTTGGTGAGGGCGGGGGACACTGAAGCTTTCTTT CASSLVRAGDTEAFF TRBV7-9*01 TRBJ1-1*01 11.0 604.0 _CASSLVRAGDTEAFF 1 4669 BZLF1-190-197 EBV 1.0 2156 NEG 103 4566 7 EBV BZLF1 RAKFKQLL transitional T cells between effector and memory populations PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-B*08:01 B2M MHCI -3753 chip0420_577053 7.56 10.81 Chip1 healthy_1 healthy _ 6746 6171 M1 FLU 0.6 1250 M1 113 6058 7 InfluenzaA M1 GILGFVFTL transitional T cells between effector and memory populations PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*02:01 B2M MHCI -3754 chip0420_371370 9.05 8.02 Chip1 T1D_1 T1D TGCGCCCGCTGTTTTCTCGGGCCCGGTCTCAACGCGCAGTACTTC CARCFLGPGLNAQYF TRBV28*01 TRBJ2-7*01 2.0 91.0 _CARCFLGPGLNAQYF 1 3247 EBV-BLMF1 EBV 0.47 2531 NEG 120 3127 8 EBV BLMF1 GLCTLVAML effector memory T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*02:01 B2M MHCI -3755 chip0420_97705 -2.72 13.9 Chip1 T1D_1 T1D _ 6746 2710 EBV-LMP2A EBV 0.53 700 NEG 96 2614 1 EBV LMP2A CLGGLLTMV Naive T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*02:01 B2M MHCI -3756 chip0420_130543 15.46 9.27 Chip1 T1D_2 T1D TGTGTCGTGCTCCAGTATCACCAGGGCCCCAAGCTTATCTCC CVVLQYHQGPKLIS TRAV12-1*01 TRAJ23*01 8.0 718.0 TCCGTGGTGATCCATTATAACCAGGCAGTACAGCTTATCTTC SVVIHYNQAVQLIF TRAV12-1*01 TRAJ23*01 5.0 36.0 0.21 TGTGCCAGCAGCCATGCACTAGAGAACACCGGGGAGCTGTTTTTT CASSHALENTGELFF TRBV3-1*01 TRBJ2-2*01 89.0 4806.0 CVVLQYHQGPKLIS_CASSHALENTGELFF 1 2336 EBV-BRLF1 EBV 0.84 1264 EBV-BRLF1 100 2236 12 EBV BRLF1 YVLDHLIVV effector T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*02:01 B2M MHCI -3757 chip0420_72497 11.03 8.84 Chip1 T1D_2 T1D TGTGCTGTCCTTATGGATAGCAACTATCAGTTAATCTGG CAVLMDSNYQLIW TRAV12-3*01,TRAV21*01 TRAJ33*01 31.0 2068.0 TGCGCCAGCAGTGAGGACGGTATGAACACTGAAGCTTTCTTT CASSEDGMNTEAFF TRBV10-2*01 TRBJ1-1*01 14.0 639.0 CAVLMDSNYQLIW_CASSEDGMNTEAFF 6 3991 EBV-LMP2A EBV 0.97 700 EBV-LMP2A 115 3876 10 EBV LMP2A CLGGLLTMV effector memory T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*02:01 B2M MHCI -3758 chip0420_722968 6.41 12.1 Chip1 healthy_1 healthy _ 6746 3357 M1 FLU 0.63 1250 NEG 101 3256 7 InfluenzaA M1 GILGFVFTL transitional T cells between effector and memory populations PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*02:01 B2M MHCI -3759 chip0420_401268 8.36 10.86 Chip1 T1D_2 T1D _ 6746 4930 EBV-BRLF1 EBV 0.94 1264 EBV-BRLF1 122 4808 8 EBV BRLF1 YVLDHLIVV effector memory T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*02:01 B2M MHCI -3760 chip0420_288116 10.0 9.64 Chip1 T1D_1 T1D TGTGCCAGCAGGGCACTACTAGGGGGTAAAGAGACCCAGTACTTC CASRALLGGKETQYF TRBV6-1*01 TRBJ2-5*01 6.0 175.0 _CASRALLGGKETQYF 3 3839 EBV-BRLF1 EBV 0.9 1264 NEG 127 3712 8 EBV BRLF1 YVLDHLIVV effector memory T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*02:01 B2M MHCI -3761 chip0420_218494 10.95 12.76 Chip1 T1D_2 T1D TGTGCAGCGTATGCAGGCAACATGCTCCCCTTT CAAYAGNMLPF TRAV29/DV5*01 TRAJ39*01 10.0 994.0 CAAYAGNMLPF_ 1 2165 EBV-BLMF1 EBV 0.71 2531 NEG 117 2048 11 EBV BLMF1 GLCTLVAML effector T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*02:01 B2M MHCI -3762 chip0420_206935 13.08 6.68 Chip1 T1D_2 T1D _ 6746 2581 EBV-BLMF1 EBV 0.57 2531 NEG 141 2440 10 EBV BLMF1 GLCTLVAML effector memory T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*02:01 B2M MHCI -3763 chip0420_42783 15.88 9.11 Chip1 T1D_2 T1D TGCAGCGTTGACCAAAGGACAGGGCAAAAGAAGAACTATGGCTACACCTTC CSVDQRTGQKKNYGYTF TRBV29-1*01 TRBJ1-2*01 87.0 4161.0 _CSVDQRTGQKKNYGYTF 40 2259 EBV-BLMF1 EBV 0.88 2531 EBV-BLMF1 110 2149 12 EBV BLMF1 GLCTLVAML effector T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*02:01 B2M MHCI -3764 chip0420_782889 12.77 6.8 Chip1 T1D_2 T1D CGTGCCAGCAGCCAAGATCTGCTAGCAGTGGGGGAGCTGTTTTTT RASSQDLLAVGELFF TRBV3-1*01 TRBJ2-2*01 27.0 1952.0 _RASSQDLLAVGELFF 1 3831 EBV-BRLF1 EBV 0.96 1264 EBV-BRLF1 122 3709 10 EBV BRLF1 YVLDHLIVV effector memory T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*02:01 B2M MHCI -3765 chip0420_530954 -2.56 10.11 Chip1 T1D_1 T1D TGTGCCGTGGACCTCCCGCCAAGGAAGTCTCATCTTT CAVDLP??cQGSLIF TRAV39*01 TRAJ42*01 25.0 2067.0 CAVDLP??cQGSLIF_ 1 4851 PGT-178 PGT 0.95 1480 PGT-178 119 4732 3 HomoSapiens PGT LLAGIGTVPI Naive T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*02:01 B2M MHCI -3766 chip0420_8104 11.65 8.14 Chip1 T1D_2 T1D TGCAGCGTTGGGGGCAGCTTCTATGGCTACACCTTC CSVGGSFYGYTF TRBV29-1*01 TRBJ1-2*01 22.0 2293.0 _CSVGGSFYGYTF 42 2533 EBV-BLMF1 EBV 0.75 2531 NEG 136 2397 10 EBV BLMF1 GLCTLVAML effector memory T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*02:01 B2M MHCI -3767 chip0420_769196 12.25 7.06 Chip1 T1D_2 T1D TGCGCCAGCAGGATGGGGGCCGGGGATACGCAGTATTTT CASRMGAGDTQYF TRBV10-2*01 TRBJ2-3*01 35.0 1752.0 _CASRMGAGDTQYF 90 3298 EBV-BLMF1 EBV 0.83 2531 NEG 116 3182 10 EBV BLMF1 GLCTLVAML effector memory T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*02:01 B2M MHCI -3768 chip0420_339659 11.92 10.71 Chip1 T1D_1 T1D _ 6746 2239 EBV-BLMF1 EBV 0.8 2531 NEG 109 2130 9 EBV BLMF1 GLCTLVAML effector memory T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*02:01 B2M MHCI -3769 chip0420_315513 11.76 10.42 Chip1 T1D_1 T1D TGTGCCAGCAGTCCGGACCAAACTAGCTCCTACAATGAGCAGTTCTTC CASSPDQTSSYNEQFF TRBV27*01 TRBJ2-1*01 7.0 241.0 _CASSPDQTSSYNEQFF 47 3009 EBV-BRLF1 EBV 0.82 1264 NEG 117 2892 9 EBV BRLF1 YVLDHLIVV effector memory T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*02:01 B2M MHCI -3770 chip0420_314459 10.55 11.62 Chip1 T1D_2 T1D _ 6746 2919 EBV-BRLF1 EBV 0.84 1264 EBV-BRLF1 114 2805 9 EBV BRLF1 YVLDHLIVV effector memory T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*02:01 B2M MHCI -3771 chip0420_276186 11.34 7.19 Chip1 T1D_2 T1D TGTGCCAGCAGCTCGGGACTAGTCGCCCCCGGGGAGCTGTTTTTT CASSSGLVAPGELFF TRBV2*01 TRBJ2-2*01 65.0 3956.0 _CASSSGLVAPGELFF 133 4248 EBV-BLMF1 EBV 0.5 2531 NEG 119 4129 10 EBV BLMF1 GLCTLVAML effector memory T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*02:01 B2M MHCI -3772 chip0420_143926 13.65 6.95 Chip1 T1D_1 T1D TGTGCCAGCAGTTCGGGACAGGTACTTCCCAATGAGCAGTTCTTC CASSSGQVLPNEQFF TRBV2*01 TRBJ2-1*01 12.0 613.0 _CASSSGQVLPNEQFF 61 3908 EBV-BLMF1 EBV 0.75 2531 NEG 130 3778 10 EBV BLMF1 GLCTLVAML effector memory T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*02:01 B2M MHCI -3773 chip0420_822537 9.93 10.98 Chip1 T1D_2 T1D TGTGCCGTGAAGGACACCGACAAGCTCATCTTT CAVKDTDKLIF TRAV8-1*01 TRAJ34*01 27.0 2200.0 CAVKDTDKLIF_ 56 3715 EBV-BRLF1 EBV 1.0 1264 NEG 107 3608 9 EBV BRLF1 YVLDHLIVV effector memory T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*02:01 B2M MHCI -3774 chip0420_572630 8.54 13.84 Chip1 T1D_1 T1D TGTGCCAGTAGTAGCAGGAGCTCCTACGAGCAGTACTTC CASSSRSSYEQYF TRBV19*01 TRBJ2-7*01 26.0 1395.0 _CASSSRSSYEQYF 2 2474 M1 FLU 0.63 1250 M1 127 2347 11 InfluenzaA M1 GILGFVFTL effector T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*02:01 B2M MHCI -3775 chip0420_117573 9.47 8.85 Chip1 T1D_1 T1D TGTGCTGTGAGTGATACCGGCCCGCCCCTACAAATACATCTTT CAVSDTG??cRPYKYIF TRAV8-6*01 TRAJ40*01 46.0 2133.0 TGTGCCAGCAGTCCGGACCAAACTAGCTCCTACAATGAGCAGTTCTTC CASSPDQTSSYNEQFF TRBV27*01 TRBJ2-1*01 39.0 2006.0 CAVSDTG??cRPYKYIF_CASSPDQTSSYNEQFF 1 3071 EBV-BRLF1 EBV 0.85 1264 EBV-BRLF1 115 2956 8 EBV BRLF1 YVLDHLIVV effector memory T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*02:01 B2M MHCI -3776 chip0420_18576 -3.49 13.22 Chip1 T1D_1 T1D TGCAGCGTTTCACCGGGGGCTCCTACGAGCAGTACTTC CSVSPGg?cSYEQYF TRBV29-1*01 TRBJ2-7*01 2.0 119.0 _CSVSPGg?cSYEQYF 1 4788 PGT-178 PGT 0.75 1480 PGT-178 115 4673 1 HomoSapiens PGT LLAGIGTVPI Naive T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*02:01 B2M MHCI -3777 chip0420_710581 -3.28 8.5 Chip1 healthy_1 healthy TGCATCCTCCTTTCCAACTTCAACAAATTTTACTTT CILLSNFNKFYF TRAV26-2*01 TRAJ21*01 26.0 2058.0 TGTGCCAGCATTAGCTTGGACCCCTTGTACTTC CASISLDPLYF TRBV2*01 TRBJ2-5*01 1.0 60.0 CILLSNFNKFYF_CASISLDPLYF 1 6148 PGT-178 PGT 0.86 1480 PGT-178 98 6050 2 HomoSapiens PGT LLAGIGTVPI Naive T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*02:01 B2M MHCI -3778 chip0420_184972 -3.17 11.69 Chip1 T1D_1 T1D _ 6746 4351 PGT-178 PGT 0.8 1480 PGT-178 100 4251 1 HomoSapiens PGT LLAGIGTVPI Naive T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*02:01 B2M MHCI -3779 chip0420_681436 9.89 7.26 Chip1 T1D_2 T1D TGTGCTGTCCTCATGGATAGCAACTATCAGTTAATCTGG CAVLMDSNYQLIW TRAV21*01 TRAJ33*01 39.0 2160.0 TGCGCCAGCAGCTCAGACGGAATGAACACTGAAGCTTTCTTT CASSSDGMNTEAFF TRBV10-2*01 TRBJ1-1*01 27.0 1508.0 CAVLMDSNYQLIW_CASSSDGMNTEAFF 1 5330 EBV-LMP2A EBV 0.97 700 EBV-LMP2A 111 5219 10 EBV LMP2A CLGGLLTMV effector memory T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*02:01 B2M MHCI -3780 chip0420_206592 13.78 10.17 Chip1 T1D_1 T1D _ 6746 3879 EBV-BRLF1 EBV 1.0 1264 EBV-BRLF1 111 3768 12 EBV BRLF1 YVLDHLIVV effector T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*02:01 B2M MHCI -3781 chip0420_796099 -2.84 8.49 Chip1 T1D_1 T1D TGTGCCAGCAGCTCCGAAACAGGGACGGAGACCCAGTACTTC CASSSETGTETQYF TRBV7-9*01 TRBJ2-5*01 27.0 1241.0 _CASSSETGTETQYF 1 6949 GP160-311-320 HIV 0.55 109 NEG 107 6842 2 HIV-1 GP160 RGPGRAFVTI Naive T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*02:01 B2M MHCI -3782 chip0420_176788 7.54 10.72 Chip1 healthy_1 healthy _ 6746 5991 M1 FLU 0.72 1250 M1 107 5884 7 InfluenzaA M1 GILGFVFTL transitional T cells between effector and memory populations PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*02:01 B2M MHCI -3783 chip0420_133638 9.36 9.68 Chip1 T1D_1 T1D _ 6746 4387 EBV-BLMF1 EBV 0.64 2531 NEG 101 4286 8 EBV BLMF1 GLCTLVAML effector memory T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*02:01 B2M MHCI -3784 chip0420_1049 6.28 10.01 Chip1 T1D_1 T1D TGTGCTACGGAAGGGGATTCAGGATACAGCACCCTCACCTTT CATEGDSGYSTLTF TRAV17*01 TRAJ11*01 1.0 59.0 TGGGCCCGCAGTGTGCAGGGCGGTAACTATGGCTACACCTTC WARSVQGGNYGYTF TRBV6-1*01 TRBJ1-2*01 3.0 136.0 CATEGDSGYSTLTF_WARSVQGGNYGYTF 1 4654 EBV-LMP2-FLY EBV 0.76 355 EBV-LMP2-FLY 104 4550 6 EBV LMP2 FLYALALLL central memory T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*02:01 B2M MHCI -3785 chip0420_441827 4.94 11.1 Chip1 healthy_2 healthy TGCGCCAGCAGCCAAGGCCCTAGCGGGGCGAATGAGCAGTTCTTC CASSQGPSGANEQFF TRBV4-3*01 TRBJ2-1*01 1.0 22.0 _CASSQGPSGANEQFF 1 3332 PGT-178 PGT 0.94 1480 PGT-178 113 3219 6 HomoSapiens PGT LLAGIGTVPI central memory T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*02:01 B2M MHCI -3786 chip0420_366172 10.75 10.6 Chip1 T1D_2 T1D _ 6746 3151 EBV-BRLF1 EBV 1.0 1264 EBV-BRLF1 108 3043 9 EBV BRLF1 YVLDHLIVV effector memory T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*02:01 B2M MHCI -3787 chip0420_281497 5.65 12.9 Chip1 T1D_1 T1D TGTGCCAGTAGTATAAATGGGGGCCGGAGGGATGGCTACACCTTC CASSINGGRRDGYTF TRBV19*01 TRBJ1-2*01 2.0 41.0 _CASSINGGRRDGYTF 32 3914 M1 FLU 0.74 1250 M1 124 3790 7 InfluenzaA M1 GILGFVFTL transitional T cells between effector and memory populations PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*02:01 B2M MHCI -3788 chip0420_768396 -4.45 8.73 Chip1 healthy_2 healthy _ 6746 5051 INS-MAL-8 INS 0.94 38 INS-MAL-8 87 4964 2 HomoSapiens INS MALWMRLL Naive T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-B*08:01 B2M MHCI -3789 chip0420_519015 14.29 10.19 Chip1 T1D_1 T1D _ 6746 2681 EBV-BLMF1 EBV 0.56 2531 NEG 112 2569 12 EBV BLMF1 GLCTLVAML effector T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*02:01 B2M MHCI -3790 chip0420_40817 -3.48 8.72 Chip1 T1D_2 T1D TGTGCCGAGGGGGGGAATGGTCAGAATTTTGTCTTT CAEGGNGQNFVF TRAV12-2*01 TRAJ26*01 29.0 2058.0 TGTGCCAGCAGCTTTAGCGGAGAGCAGTTCTTC CASSFSGEQFF TRBV5-4*01 TRBJ2-1*01 11.0 720.0 CAEGGNGQNFVF_CASSFSGEQFF 1 5148 MART1-ALA MART1 0.43 269 MART1-ALA 111 5037 2 HomoSapiens MART1 ALAGIGILTV Naive T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*02:01 B2M MHCI -3791 chip0420_13777 12.51 10.64 Chip1 T1D_2 T1D TGTGCCGTGAAGGACACCGACAAGCTCATCTTT CAVKDTDKLIF TRAV8-1*01 TRAJ34*01 5.0 371.0 TGTGCCTGGAGTGTACAGCTAGCGGGAGTAGACGAGCAGTACTTC CAWSVQLAGVDEQYF TRBV30*01 TRBJ2-7*01 38.0 1961.0 CAVKDTDKLIF_CAWSVQLAGVDEQYF 9 2334 EBV-BRLF1 EBV 1.0 1264 NEG 105 2229 9 EBV BRLF1 YVLDHLIVV effector memory T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*02:01 B2M MHCI -3792 chip0420_128274 5.94 13.46 Chip1 T1D_1 T1D _ 6746 4173 M1 FLU 0.95 1250 M1 110 4063 7 InfluenzaA M1 GILGFVFTL transitional T cells between effector and memory populations PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*02:01 B2M MHCI -3793 chip0420_47598 13.58 7.67 Chip1 T1D_1 T1D TGCGGCCCAGAGGAACCTAACGACTACAAGCTCAGCTTT CGPEEPNDYKLSF TRAV30*01 TRAJ20*01 31.0 2066.0 CGPEEPNDYKLSF_ 13 1916 EBV-BLMF1 EBV 0.55 2531 NEG 120 1796 10 EBV BLMF1 GLCTLVAML effector memory T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*02:01 B2M MHCI -3794 chip0420_231029 11.43 11.72 Chip1 T1D_1 T1D TGTGCAGCACCTCGGTGGGAGCAATTAACCTTT CAAPRWEQLTF TRAV13-1*01 TRAJ48*01 51.0 4268.0 CAAPRWEQLTF_ 1 2080 EBV-BRLF1 EBV 0.87 1264 EBV-BRLF1 147 1933 9 EBV BRLF1 YVLDHLIVV effector memory T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*02:01 B2M MHCI -3795 chip0420_701803 5.72 13.28 Chip1 T1D_1 T1D TGTGCAGGCGGCGGAAGCCAAGGAAATCTCATCTTT CAGGGSQGNLIF TRAV27*01 TRAJ42*01 9.0 792.0 CAGGGSQGNLIF_ 4 4836 M1 FLU 0.72 1250 M1 116 4720 7 InfluenzaA M1 GILGFVFTL transitional T cells between effector and memory populations PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*02:01 B2M MHCI -3796 chip0420_880244 -3.02 10.59 Chip1 T1D_1 T1D TGTGCAATGGAGATATCTAACTTTGGAAATGAGAAATTAACCTTT CAMEISNFGNEKLTF TRAV12-3*01 TRAJ48*01 219.0 8177.0 TGTGCCAGCAGGGACTTCGGGAACTATGGCTACACCTTC CASRDFGNYGYTF TRBV6-1*01 TRBJ1-2*01 5.0 112.0 CAMEISNFGNEKLTF_CASRDFGNYGYTF 1 4465 PGT-178 PGT 0.81 1480 PGT-178 108 4357 3 HomoSapiens PGT LLAGIGTVPI Naive T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*02:01 B2M MHCI -3797 chip0420_465304 -3.49 10.77 Chip1 T1D_1 T1D _ 6746 4185 PGT-178 PGT 0.85 1480 PGT-178 105 4080 1 HomoSapiens PGT LLAGIGTVPI Naive T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*02:01 B2M MHCI -3798 chip0420_422530 14.33 13.39 Chip1 T1D_2 T1D TGCAGCGTGGGGACAGGGGGAACTAATGAAAAACTGTTTTTT CSVGTGGTNEKLFF TRBV29-1*01 TRBJ1-4*01 83.0 3865.0 _CSVGTGGTNEKLFF 638 1384 EBV-BLMF1 EBV 0.43 2531 NEG 120 1264 12 EBV BLMF1 GLCTLVAML effector T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*02:01 B2M MHCI -3799 chip0420_762843 -3.75 11.88 Chip1 healthy_1 healthy _ 6746 3441 PGT-178 PGT 0.44 1480 PGT-178 84 3357 1 HomoSapiens PGT LLAGIGTVPI Naive T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*02:01 B2M MHCI -3800 chip0420_9735 8.62 11.75 Chip1 T1D_1 T1D _ 6746 4603 CVB3-P3A CVB 0.76 77 NEG 119 4484 7 CoxsackievirusB P3A GIIYIIYKL transitional T cells between effector and memory populations PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*02:01 B2M MHCI -3801 chip0420_737048 6.26 12.79 Chip1 healthy_1 healthy TGTGCAGGGAGTTATGGAGGAAGCCAAGGAAATCTCATCTTT CAGSYGGSQGNLIF TRAV25*01 TRAJ42*01 10.0 435.0 CAGSYGGSQGNLIF_ 1 3721 M1 FLU 0.87 1250 NEG 100 3621 7 InfluenzaA M1 GILGFVFTL transitional T cells between effector and memory populations PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*02:01 B2M MHCI -3802 chip0420_448466 0.03 9.06 Chip1 T1D_1 T1D TGTGCCAGCATCCCGGGACGGAACTATGGCTACACCTTC CASIPGRNYGYTF TRBV28*01 TRBJ1-2*01 60.0 3714.0 _CASIPGRNYGYTF 1 4280 PGT-178 PGT 0.58 1480 PGT-178 110 4170 4 HomoSapiens PGT LLAGIGTVPI Naive T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*02:01 B2M MHCI -3803 chip0420_354811 5.65 10.43 Chip1 T1D_1 T1D _ 6746 4521 EBV-LMP1-1 EBV 0.71 237 EBV-LMP1-1 106 4415 6 EBV LMP1 YLLEMLWRL central memory T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*02:01 B2M MHCI -3804 chip0420_698778 13.2 10.82 Chip1 T1D_1 T1D TGTGCCAGCAGTCCGGACCAAACTAGCTCCTACAATGAGCAGTTCTTC CASSPDQTSSYNEQFF TRBV27*01 TRBJ2-1*01 6.0 230.0 _CASSPDQTSSYNEQFF 47 2520 EBV-BRLF1 EBV 0.81 1264 NEG 113 2407 9 EBV BRLF1 YVLDHLIVV effector memory T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*02:01 B2M MHCI -3805 chip0420_489754 -3.59 11.47 Chip1 T1D_2 T1D _ 6746 3647 PGT-178 PGT 0.85 1480 PGT-178 92 3555 1 HomoSapiens PGT LLAGIGTVPI Naive T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*02:01 B2M MHCI -3806 chip0420_860724 15.76 12.23 Chip1 T1D_2 T1D TGTGCTCCGGTGGCCCGCTGGGGGAAATTGCAGTTT CAPVARWGKLQF TRAV17*01 TRAJ24*01 31.0 2094.0 TGTGCCAGCAGCTTATTCGGGACTAGCGACTACGAGCAGTACTTC CASSLFGTSDYEQYF TRBV13*01 TRBJ2-7*01 53.0 2914.0 CAPVARWGKLQF_CASSLFGTSDYEQYF 1 1648 GAD65-114-122 GAD65 0.46 63 NEG 96 1552 12 HomoSapiens GAD65 VMNILLQYV effector T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*02:01 B2M MHCI -3807 chip0420_256622 6.35 14.14 Chip1 T1D_1 T1D _ 6746 2293 M1 FLU 0.93 1250 NEG 100 2193 7 InfluenzaA M1 GILGFVFTL transitional T cells between effector and memory populations PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*02:01 B2M MHCI -3808 chip0420_115508 -3.26 8.39 Chip1 healthy_1 healthy _ 6746 5418 PGT-178 PGT 0.59 1480 PGT-178 90 5328 2 HomoSapiens PGT LLAGIGTVPI Naive T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*02:01 B2M MHCI -3809 chip0420_806593 11.16 8.4 Chip1 T1D_2 T1D _ 6746 5060 EBV-BLMF1 EBV 0.86 2531 NEG 111 4949 10 EBV BLMF1 GLCTLVAML effector memory T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*02:01 B2M MHCI -3810 chip0420_569201 9.18 9.23 Chip1 T1D_3 T1D _ 6746 4033 BZLF1-190-197 EBV 0.74 2156 BZLF1-190-197 114 3919 8 EBV BZLF1 RAKFKQLL effector memory T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-B*08:01 B2M MHCI -3811 chip0420_212427 14.28 9.89 Chip1 T1D_1 T1D TGTGCCAGCAGCCACTTATTAGGGACAGGTTTTGGCTACACCTTC CASSHLLGTGFGYTF TRBV3-1*01 TRBJ1-2*01 23.0 1196.0 _CASSHLLGTGFGYTF 6 5206 EBV-BRLF1 EBV 0.83 1264 EBV-BRLF1 93 5113 12 EBV BRLF1 YVLDHLIVV effector T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*02:01 B2M MHCI -3812 chip0420_594650 9.02 9.21 Chip1 T1D_2 T1D _ 6746 3871 PGT-178 PGT 0.73 1480 NEG 122 3749 8 HomoSapiens PGT LLAGIGTVPI effector memory T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*02:01 B2M MHCI -3813 chip0420_18218 4.98 10.57 Chip1 T1D_1 T1D TGTGCCAACAGTGCGGTGACAGGGGGCAGAGAAAAACTGTTTTTT CANSAVTGGREKLFF TRAV24*01 TRAJ5*01 2.0 14.0 TGTGCCAGCAGTGCGGTGACAGGGGGCAGGGAAAAACTGTTTTTT CASSAVTGGREKLFF TRBV25-1*01 TRBJ1-4*01 81.0 3516.0 CANSAVTGGREKLFF_CASSAVTGGREKLFF 1 3332 GP160-311-320 HIV 0.91 109 NEG 114 3218 6 HIV-1 GP160 RGPGRAFVTI central memory T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*02:01 B2M MHCI -3814 chip0420_754473 14.72 9.36 Chip1 T1D_1 T1D TGTGCCAGCAGCACGGGACAGCTATCGAACACCGGGGAGCTGTTTTTT CASSTGQLSNTGELFF TRBV9*01 TRBJ2-2*01 17.0 938.0 _CASSTGQLSNTGELFF 82 1825 EBV-BLMF1 EBV 0.6 2531 NEG 109 1716 12 EBV BLMF1 GLCTLVAML effector T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*02:01 B2M MHCI -3815 chip0420_676005 7.02 11.74 Chip1 T1D_1 T1D _ 6746 5430 M1 FLU 0.88 1250 M1 113 5317 7 InfluenzaA M1 GILGFVFTL transitional T cells between effector and memory populations PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*02:01 B2M MHCI -3816 chip0420_433432 -1.54 8.5 Chip1 T1D_1 T1D TGTGTGGTGAACTCGGATAATGCAGGCAACATGCTCACCTTT CVVNSDNAGNMLTF TRAV12-1*01 TRAJ39*01 1.0 20.0 TGTGCCAGCCGTTACCGGGGACTACAACCCTATGGCTACACCTTC CASRYRGLQPYGYTF TRBV6-5*01 TRBJ1-2*01 7.0 240.0 CVVNSDNAGNMLTF_CASRYRGLQPYGYTF 1 6011 PGT-178 PGT 0.48 1480 PGT-178 113 5898 3 HomoSapiens PGT LLAGIGTVPI Naive T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*02:01 B2M MHCI -3817 chip0420_131358 9.46 9.05 Chip1 T1D_1 T1D TGCAGCGTCGGCTCCAGGGGAACTAATGAAAAACTGTTTTTT CSVGSRGTNEKLFF TRBV29-1*01 TRBJ1-4*01 196.0 9581.0 _CSVGSRGTNEKLFF 283 3038 EBV-BLMF1 EBV 0.75 2531 NEG 108 2930 8 EBV BLMF1 GLCTLVAML effector memory T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*02:01 B2M MHCI -3818 chip0420_610925 -1.87 12.46 Chip1 healthy_1 healthy TGTGCCAGTAGTGGACTAGCGGGAATCAATGAGCAGTTCTTC CASSGLAGINEQFF TRBV19*01 TRBJ2-1*01 5.0 258.0 _CASSGLAGINEQFF 1 3176 M1 FLU 0.97 1250 M1 92 3084 7 InfluenzaA M1 GILGFVFTL transitional T cells between effector and memory populations PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*02:01 B2M MHCI -3819 chip0420_604174 -3.45 11.57 Chip1 T1D_1 T1D TGTGCCAGCAGTGATGGGACAGGGACCCCGAACACCGGGGAGCTGTTTTTT CASSDGTGTPNTGELFF TRBV2*01 TRBJ2-2*01 52.0 2309.0 _CASSDGTGTPNTGELFF 1 4131 IAPP-5-13 IAPP 0.63 30 IAPP-5-13 95 4036 1 HomoSapiens IAPP KLQVFLIVL Naive T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*02:01 B2M MHCI -3820 chip0420_559313 6.29 13.37 Chip1 healthy_1 healthy _ 6746 3768 M1 FLU 0.94 1250 M1 88 3680 7 InfluenzaA M1 GILGFVFTL transitional T cells between effector and memory populations PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*02:01 B2M MHCI -3821 chip0420_744814 -2.99 9.32 Chip1 T1D_3 T1D _ 6746 5500 ZNT8-YAK-9 ZNT8 0.55 59 ZNT8-YAK-9 104 5396 2 HomoSapiens ZNT8 YAKWKLCSA Naive T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-B*08:01 B2M MHCI -3822 chip0420_432042 10.61 10.8 Chip1 T1D_1 T1D TGTGCCAGCAGCCCAGTTAGCGGGTCAACCTACGAGCAGTACTTC CASSPVSGSTYEQYF TRBV3-1*01 TRBJ2-7*01 5.0 235.0 _CASSPVSGSTYEQYF 80 6015 EBV-BLMF1 EBV 0.9 2531 EBV-BLMF1 132 5883 9 EBV BLMF1 GLCTLVAML effector memory T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*02:01 B2M MHCI -3823 chip0420_161667 8.68 13.86 Chip1 T1D_1 T1D _ 6746 2370 M1 FLU 0.92 1250 M1 107 2263 11 InfluenzaA M1 GILGFVFTL effector T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*02:01 B2M MHCI -3824 chip0420_575100 11.37 11.09 Chip1 T1D_1 T1D _ 6746 2830 EBV-BRLF1 EBV 0.93 1264 EBV-BRLF1 104 2726 9 EBV BRLF1 YVLDHLIVV effector memory T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*02:01 B2M MHCI -3825 chip0420_822926 12.21 8.49 Chip1 T1D_2 T1D _ 6746 2359 EBV-BRLF1 EBV 0.96 1264 EBV-BRLF1 103 2256 10 EBV BRLF1 YVLDHLIVV effector memory T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*02:01 B2M MHCI -3826 chip0420_366669 12.21 7.28 Chip1 T1D_2 T1D TGTGCAGCGTATGCAGGCAACATGCTCACCTTT CAAYAGNMLTF TRAV29/DV5*01 TRAJ39*01 12.0 1170.0 TGCGCCAACAGGGCGGGCGCCGGGATACGCAGTATTTT CANRAGg?cRDTQYF TRBV10-2*01 TRBJ2-3*01 19.0 1054.0 CAAYAGNMLTF_CANRAGg?cRDTQYF 1 3364 EBV-BLMF1 EBV 0.62 2531 NEG 129 3235 10 EBV BLMF1 GLCTLVAML effector memory T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*02:01 B2M MHCI -3827 chip0420_628706 11.69 8.14 Chip1 T1D_2 T1D TGCGCCAGCAGAGCGGGAGCCGGGGATACGCAGTATTTT CASRAGAGDTQYF TRAV9-1*01 TRAJ40*01 1.0 13.0 TGCGCCAGCAGAGCGGGAGCCGGGGATACGCAGTATTTT CASRAGAGDTQYF TRBV10-2*01 TRBJ2-3*01 53.0 2846.0 CASRAGAGDTQYF_CASRAGAGDTQYF 4 3019 EBV-BLMF1 EBV 0.83 2531 NEG 121 2898 10 EBV BLMF1 GLCTLVAML effector memory T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*02:01 B2M MHCI -3828 chip0420_455288 -3.5 9.18 Chip1 healthy_1 healthy TGCAGCGCTGAGCCTCGGAACGAAGGAAACACCATATATTTT CSAEPRNEGNTIYF TRBV29-1*01 TRBJ1-3*01 116.0 6848.0 _CSAEPRNEGNTIYF 1 6245 ZNT8-115-123 ZNT8 0.78 74 ZNT8-115-123 92 6153 2 HomoSapiens ZNT8 LLSLFSLWL Naive T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*02:01 B2M MHCI -3829 chip0420_72352 12.25 9.14 Chip1 T1D_1 T1D _ 6746 3541 EBV-BRLF1 EBV 0.85 1264 NEG 115 3426 10 EBV BRLF1 YVLDHLIVV effector memory T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*02:01 B2M MHCI -3830 chip0420_458860 5.24 9.78 Chip1 healthy_2 healthy _ 6746 3451 EBV-LMP1-1 EBV 0.71 237 NEG 103 3348 6 EBV LMP1 YLLEMLWRL central memory T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*02:01 B2M MHCI -3831 chip0420_373290 14.54 9.09 Chip1 T1D_1 T1D _ 6746 2971 EBV-BLMF1 EBV 0.62 2531 NEG 105 2866 12 EBV BLMF1 GLCTLVAML effector T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*02:01 B2M MHCI -3832 chip0420_863619 5.51 9.62 Chip1 T1D_1 T1D _ 6746 3613 EBV-LMP2-FLY EBV 0.68 355 NEG 119 3494 6 EBV LMP2 FLYALALLL central memory T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*02:01 B2M MHCI -3833 chip0420_344673 13.09 8.31 Chip1 T1D_1 T1D _ 6746 3379 EBV-BLMF1 EBV 0.74 2531 EBV-BLMF1 118 3261 10 EBV BLMF1 GLCTLVAML effector memory T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*02:01 B2M MHCI -3834 chip0420_405035 -2.21 9.31 Chip1 T1D_2 T1D _ 6746 4248 EBV-LMP2A EBV 0.58 700 NEG 119 4129 3 EBV LMP2A CLGGLLTMV Naive T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*02:01 B2M MHCI -3835 chip0420_121927 9.4 9.61 Chip1 T1D_2 T1D TGTGCCAGCAGCTCGGGACTAGTCGCCCCCGGGGAGCTGTTTTTT CASSSGLVAPGELFF TRBV2*01 TRBJ2-2*01 37.0 2171.0 _CASSSGLVAPGELFF 133 4621 EBV-BLMF1 EBV 0.8 2531 NEG 131 4490 8 EBV BLMF1 GLCTLVAML effector memory T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*02:01 B2M MHCI -3836 chip0420_847060 -2.25 11.17 Chip1 healthy_1 healthy _ 6746 4173 ROTA-VP3 ROTA 0.71 41 NEG 113 4060 4 RotavirusA VP3 YLLPGWKL Naive T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*02:01 B2M MHCI -3837 chip0420_499528 9.6 9.63 Chip1 T1D_1 T1D _ 6746 4394 EBV-BLMF1 EBV 0.6 2531 NEG 102 4292 8 EBV BLMF1 GLCTLVAML effector memory T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*02:01 B2M MHCI -3838 chip0420_424498 13.6 10.53 Chip1 T1D_1 T1D TGTGCCAGCAGCACGGGACAGCTATCGAACACCGGGGAGCTGTTTTTT CASSTGQLSNTGELFF TRBV9*01 TRBJ2-2*01 59.0 2768.0 _CASSTGQLSNTGELFF 82 2544 EBV-BLMF1 EBV 0.64 2531 NEG 126 2418 12 EBV BLMF1 GLCTLVAML effector T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*02:01 B2M MHCI -3839 chip0420_390165 10.22 10.05 Chip1 T1D_2 T1D TGTGCCAGCAGCTCGGGACTAGTCGCCCCCGGGGAGCTGTTTTTT CASSSGLVAPGELFF TRBV2*01 TRBJ2-2*01 39.0 2492.0 _CASSSGLVAPGELFF 133 3752 EBV-BLMF1 EBV 0.5 2531 NEG 121 3631 9 EBV BLMF1 GLCTLVAML effector memory T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*02:01 B2M MHCI -3840 chip0420_240959 13.89 8.33 Chip1 T1D_1 T1D CGCAGCGTCGGCTCCAGGGGAACTAATGAAAAACTGTTTTTT RSVGSRGTNEKLFF TRBV29-1*01 TRBJ1-4*01 20.0 918.0 _RSVGSRGTNEKLFF 2 3367 EBV-BLMF1 EBV 0.54 2531 NEG 116 3251 10 EBV BLMF1 GLCTLVAML effector memory T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*02:01 B2M MHCI -3841 chip0420_568575 14.93 8.47 Chip1 T1D_1 T1D _ 6746 3064 EBV-BLMF1 EBV 0.64 2531 NEG 99 2965 12 EBV BLMF1 GLCTLVAML effector T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*02:01 B2M MHCI -3842 chip0420_323138 -1.51 10.05 Chip1 T1D_1 T1D _ 6746 4582 PGT-178 PGT 0.68 1480 PGT-178 108 4474 3 HomoSapiens PGT LLAGIGTVPI Naive T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*02:01 B2M MHCI -3843 chip0420_566308 10.67 11.18 Chip1 T1D_1 T1D _ 6746 2570 EBV-BLMF1 EBV 1.0 2531 NEG 99 2471 9 EBV BLMF1 GLCTLVAML effector memory T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*02:01 B2M MHCI -3844 chip0420_305688 11.45 13.04 Chip1 T1D_1 T1D _ 6746 1972 EBV-BLMF1 EBV 0.8 2531 NEG 109 1863 11 EBV BLMF1 GLCTLVAML effector T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*02:01 B2M MHCI -3845 chip0420_739879 10.96 10.38 Chip1 T1D_1 T1D TGTGCCAGCAGTTCCGGAGGGAACGTGGATACGCAGTATTTT CASSSGGNVDTQYF TRBV7-3*01 TRBJ2-3*01 29.0 1363.0 _CASSSGGNVDTQYF 47 3584 EBV-BLMF1 EBV 0.62 2531 NEG 130 3454 9 EBV BLMF1 GLCTLVAML effector memory T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*02:01 B2M MHCI -3846 chip0420_707045 8.08 13.92 Chip1 healthy_1 healthy TGTGCCGGCGGCCGCAGCCACGGAAATCTCATCTTT CAGGRSHGNLIF TRAV27*01 TRAJ42*01 26.0 1384.0 CAGGRSHGNLIF_ 1 2595 M1 FLU 0.48 1250 NEG 116 2479 7 InfluenzaA M1 GILGFVFTL transitional T cells between effector and memory populations PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*02:01 B2M MHCI -3847 chip0420_675618 7.46 11.43 Chip1 healthy_1 healthy TGCGGCCCGGACTGGGGGGGAGGAAGCCAAGGAAATCTCATCTTT CGPDWGGGSQGNLIF TRAV30*01 TRAJ42*01 43.0 2236.0 CGPDWGGGSQGNLIF_ 1 5064 M1 FLU 0.59 1250 M1 119 4945 7 InfluenzaA M1 GILGFVFTL transitional T cells between effector and memory populations PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*02:01 B2M MHCI -3848 chip0420_28580 -1.72 7.13 Chip1 healthy_2 healthy TGTGCAATGAGAGAGGGAATAATGCAGGCAACATGCTCACCTTT CAMREGIa?tAGNMLTF TRAV14/DV4*01 TRAJ39*01 2.0 367.0 TGTGCCAGCAGCGCGGGGACCAATGAGCAGTTCTTC CASSAGTNEQFF TRBV9*01 TRBJ2-1*01 25.0 1844.0 CAMREGIa?tAGNMLTF_CASSAGTNEQFF 1 5859 MART1-ALA MART1 0.82 269 MART1-ALA 98 5761 3 HomoSapiens MART1 ALAGIGILTV Naive T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*02:01 B2M MHCI -3849 chip0420_441785 15.23 10.4 Chip1 T1D_1 T1D TGCAGCGTCGGCTCCAGGGGAACTAATGAAAAACTGTTTTTT CSVGSRGTNEKLFF TRBV29-1*01 TRBJ1-4*01 48.0 2091.0 _CSVGSRGTNEKLFF 283 2774 EBV-BLMF1 EBV 0.6 2531 NEG 105 2669 12 EBV BLMF1 GLCTLVAML effector T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*02:01 B2M MHCI -3850 chip0420_214487 15.45 10.39 Chip1 T1D_2 T1D TGCAGCGTGTGCATACTAGCCCAGAATTACAATGAGCAGTTCTTC CSVCILAQNYNEQFF TRBV29-1*01 TRBJ2-1*01 49.0 3205.0 _CSVCILAQNYNEQFF 88 2596 PGT-178 PGT 0.55 1480 NEG 118 2478 12 HomoSapiens PGT LLAGIGTVPI effector T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*02:01 B2M MHCI -3851 chip0420_182558 10.88 10.63 Chip1 T1D_2 T1D _ 6746 4460 EBV-BLMF1 EBV 0.9 2531 NEG 106 4354 9 EBV BLMF1 GLCTLVAML effector memory T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*02:01 B2M MHCI -3852 chip0420_128976 13.05 11.41 Chip1 T1D_1 T1D TGTGCCAGCAGCCCAGTTAGCGGGTCAACCTACGAGCAGTACTTC CASSPVSGSTYEQYF TRBV3-1*01 TRBJ2-7*01 10.0 524.0 _CASSPVSGSTYEQYF 80 3130 EBV-BLMF1 EBV 0.74 2531 NEG 104 3026 9 EBV BLMF1 GLCTLVAML effector memory T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*02:01 B2M MHCI -3853 chip0420_532572 6.63 11.93 Chip1 healthy_1 healthy _ 6746 5222 M1 FLU 0.74 1250 M1 110 5112 7 InfluenzaA M1 GILGFVFTL transitional T cells between effector and memory populations PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*02:01 B2M MHCI -3854 chip0420_489344 13.23 8.42 Chip1 T1D_2 T1D _ 6746 2019 EBV-BLMF1 EBV 0.65 2531 NEG 106 1913 10 EBV BLMF1 GLCTLVAML effector memory T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*02:01 B2M MHCI -3855 chip0420_481929 8.49 11.4 Chip1 T1D_1 T1D _ 6746 4271 EBV-LMP1-1 EBV 1.0 237 EBV-LMP1-1 103 4168 7 EBV LMP1 YLLEMLWRL transitional T cells between effector and memory populations PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*02:01 B2M MHCI -3856 chip0420_711322 10.48 10.28 Chip1 T1D_1 T1D TGTGTGGTGAACGGACGGGATAGCAGCTATAAATTGATCTTC CVVNGRDSSYKLIF TRAV12-1*01 TRAJ12*01 16.0 773.0 TGTGCCAGCAGTGCCGGTCGGGTCCACCCGGGGACCCCAGTACTTC CASSAGRgt??ccTRGPQYF TRBV2*01 TRBJ2-5*01 28.0 1675.0 CVVNGRDSSYKLIF_CASSAGRgt??ccTRGPQYF 1 4342 EBV-BLMF1 EBV 0.64 2531 NEG 123 4219 9 EBV BLMF1 GLCTLVAML effector memory T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*02:01 B2M MHCI -3857 chip0420_628000 11.84 7.98 Chip1 T1D_2 T1D TGCGCCAGCAGGATGGGGGCCGGGGATACGCAGTATTTT CASRMGAGDTQYF TRBV10-2*01 TRBJ2-3*01 56.0 4036.0 _CASRMGAGDTQYF 90 3577 EBV-BLMF1 EBV 0.75 2531 NEG 106 3471 10 EBV BLMF1 GLCTLVAML effector memory T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*02:01 B2M MHCI -3858 chip0420_187538 9.0 9.19 Chip1 T1D_1 T1D TGTGCCAGCAGCGTAGGGGGCGAAGCCTGCGAGCAGTACTTC CASSVGGEACEQYF TRBV9*01 TRBJ2-7*01 19.0 1145.0 _CASSVGGEACEQYF 1 6787 EBV-BLMF1 EBV 0.5 2531 NEG 112 6675 8 EBV BLMF1 GLCTLVAML effector memory T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*02:01 B2M MHCI -3859 chip0420_139669 15.05 9.47 Chip1 T1D_1 T1D TGCGGCCCAGAGGAACCTAACGACTACAAGCTCAGCTTT CGPEEPNDYKLSF TRAV30*01 TRAJ20*01 33.0 2046.0 TGTGCCAGCAGCACGGGACAGCTATCGAACACCGGGGAGCTGTTTTTT CASSTGQLSNTGELFF TRBV9*01 TRBJ2-2*01 32.0 1457.0 CGPEEPNDYKLSF_CASSTGQLSNTGELFF 14 2548 EBV-BLMF1 EBV 0.55 2531 NEG 118 2430 12 EBV BLMF1 GLCTLVAML effector T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*02:01 B2M MHCI -3860 chip0420_130450 12.87 6.81 Chip1 T1D_2 T1D TGCAGCGTGGGGACAGGGGGAACTAATGAAAAACTGTTTTTT CSVGTGGTNEKLFF TRBV29-1*01 TRBJ1-4*01 154.0 6820.0 _CSVGTGGTNEKLFF 638 3071 EBV-BLMF1 EBV 0.5 2531 NEG 115 2956 10 EBV BLMF1 GLCTLVAML effector memory T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*02:01 B2M MHCI -3861 chip0420_93013 16.23 10.39 Chip1 T1D_1 T1D TGTGCCAGCAGTTTTCTCGGCAGTATTAACACTGAAGCTTTCTTT CASSFLGSINTEAFF TRBV27*01 TRBJ1-1*01 44.0 1843.0 _CASSFLGSINTEAFF 1 2172 IAPP-5-13 IAPP 0.75 30 NEG 108 2064 12 HomoSapiens IAPP KLQVFLIVL effector T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*02:01 B2M MHCI -3862 chip0420_787966 6.33 13.44 Chip1 T1D_1 T1D TGTGCCAGTAGTAGTAGGAGCACAGATACGCAGTATTTT CASSSRSTDTQYF TRBV19*01 TRBJ2-3*01 34.0 2510.0 _CASSSRSTDTQYF 6 3706 M1 FLU 0.81 1250 M1 108 3598 7 InfluenzaA M1 GILGFVFTL transitional T cells between effector and memory populations PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*02:01 B2M MHCI -3863 chip0420_69076 11.5 12.45 Chip1 T1D_1 T1D TGTGCCACCCAACAGGGGAGGGACAGTCAGCCCCAGCATTTT CATQQGRDSQPQHF TRBV28*01 TRBJ1-5*01 36.0 2019.0 _CATQQGRDSQPQHF 52 1910 EBV-BLMF1 EBV 0.64 2531 NEG 97 1813 11 EBV BLMF1 GLCTLVAML effector T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*02:01 B2M MHCI -3864 chip0420_567992 -1.3 9.8 Chip1 T1D_1 T1D _ 6746 5202 ROTA-VP3 ROTA 0.56 41 NEG 109 5093 3 RotavirusA VP3 YLLPGWKL Naive T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*02:01 B2M MHCI -3865 chip0420_399029 13.46 7.93 Chip1 T1D_2 T1D TGCGCCAGCAGGATGGGGGCCGGGGATACGCAGTATTTT CASRMGAGDTQYF TRBV10-2*01 TRBJ2-3*01 91.0 7052.0 _CASRMGAGDTQYF 90 1946 EBV-BLMF1 EBV 0.73 2531 NEG 136 1810 10 EBV BLMF1 GLCTLVAML effector memory T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*02:01 B2M MHCI -3866 chip0420_817652 5.35 11.13 Chip1 healthy_2 healthy _ 6746 3051 EBV-LMP1-1 EBV 0.42 237 NEG 93 2958 6 EBV LMP1 YLLEMLWRL central memory T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*02:01 B2M MHCI -3867 chip0420_575047 10.8 11.98 Chip1 T1D_1 T1D _ 6746 2542 EBV-BRLF1 EBV 1.0 1264 NEG 113 2429 9 EBV BRLF1 YVLDHLIVV effector memory T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*02:01 B2M MHCI -3868 chip0420_653309 10.41 10.61 Chip1 T1D_1 T1D _ 6746 2980 EBV-BLMF1 EBV 0.56 2531 NEG 99 2881 9 EBV BLMF1 GLCTLVAML effector memory T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*02:01 B2M MHCI -3869 chip0420_113946 10.65 13.82 Chip1 T1D_1 T1D _ 6746 1522 M1 FLU 0.42 1250 NEG 118 1404 11 InfluenzaA M1 GILGFVFTL effector T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*02:01 B2M MHCI -3870 chip0420_701169 4.94 10.63 Chip1 healthy_2 healthy _ 6746 3872 PGT-178 PGT 0.83 1480 PGT-178 115 3757 6 HomoSapiens PGT LLAGIGTVPI central memory T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*02:01 B2M MHCI -3871 chip0420_671688 11.49 7.84 Chip1 healthy_2 healthy _ 6746 3479 BZLF1-190-197 EBV 0.62 2156 NEG 102 3377 10 EBV BZLF1 RAKFKQLL effector memory T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-B*08:01 B2M MHCI -3872 chip0420_389596 14.92 10.9 Chip1 T1D_1 T1D TGTGCCAGCAGTCCGGACCAAACTAGCTCCTACAATGAGCAGTTCTTC CASSPDQTSSYNEQFF TRBV27*01 TRBJ2-1*01 32.0 1832.0 _CASSPDQTSSYNEQFF 47 1945 EBV-BRLF1 EBV 0.71 1264 EBV-BRLF1 100 1845 12 EBV BRLF1 YVLDHLIVV effector T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*02:01 B2M MHCI -3873 chip0420_872595 -2.2 13.6 Chip1 T1D_1 T1D _ 6746 3901 HCVNS3-1073-1081 HCV 0.57 36 NEG 110 3791 1 HCV NS3 CINGVCWTV Naive T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*02:01 B2M MHCI -3874 chip0420_450327 11.45 7.98 Chip1 T1D_1 T1D TGTGTGGTGAACGGGGTAGATGACCAGGGGGGAAAGCTTGTCTTC CVVNGVDDQGGKLVF TRAV12-1*01 TRAJ23*01 39.0 2059.0 CVVNGVDDQGGKLVF_ 1 3345 EBV-BLMF1 EBV 0.76 2531 EBV-BLMF1 113 3232 10 EBV BLMF1 GLCTLVAML effector memory T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*02:01 B2M MHCI -3875 chip0420_161042 11.81 9.36 Chip1 T1D_1 T1D TGTGCCAGCAGCCCAGTTAGCGGGTCAACCTACGAGCAGTACTTC CASSPVSGSTYEQYF TRBV3-1*01 TRBJ2-7*01 57.0 2837.0 _CASSPVSGSTYEQYF 80 3095 EBV-BLMF1 EBV 0.94 2531 EBV-BLMF1 111 2984 10 EBV BLMF1 GLCTLVAML effector memory T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*02:01 B2M MHCI -3876 chip0420_21973 -4.43 8.65 Chip1 T1D_1 T1D TGTGCCAGCAGTTCACCGGGACACGGTTCCCCGCATTTT CASSSPGHGSPHF TRBV12-3*01,TRBV12-4*01 TRBJ1-5*01 3.0 82.0 _CASSSPGHGSPHF 1 4987 PGT-178 PGT 0.81 1480 PGT-178 96 4891 2 HomoSapiens PGT LLAGIGTVPI Naive T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*02:01 B2M MHCI -3877 chip0420_827196 5.93 12.52 Chip1 T1D_1 T1D TGTGCTTTCATGCAGGGTGCTGGTGGTACTAGCTATAGAAAGCTGACATTT CAFMQGAGGTSYRKLTF TRAV38-1*01 TRAJ52*01 65.0 2038.0 CAFMQGAGGTSYRKLTF_ 1 6504 M1 FLU 0.57 1250 M1 98 6406 7 InfluenzaA M1 GILGFVFTL transitional T cells between effector and memory populations PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*02:01 B2M MHCI -3878 chip0420_762794 12.58 8.73 Chip1 T1D_1 T1D TGTGCCAGCAGTTCGGGACAGGTACTTCCCAATGAGCAGTTCTTC CASSSGQVLPNEQFF TRBV2*01 TRBJ2-1*01 5.0 296.0 _CASSSGQVLPNEQFF 61 2513 EBV-BLMF1 EBV 1.0 2531 NEG 125 2388 10 EBV BLMF1 GLCTLVAML effector memory T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*02:01 B2M MHCI -3879 chip0420_229987 9.43 7.91 Chip1 T1D_2 T1D TGCGCCAGCAGGATGGGGGCCGGGGATACGCAGTATTTT CASRMGAGDTQYF TRBV10-2*01 TRBJ2-3*01 33.0 2409.0 _CASRMGAGDTQYF 90 3540 EBV-BLMF1 EBV 1.0 2531 NEG 126 3414 8 EBV BLMF1 GLCTLVAML effector memory T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*02:01 B2M MHCI -3880 chip0420_160128 14.74 13.08 Chip1 T1D_1 T1D _ 6746 1027 EBV-BLMF1 EBV 0.6 2531 NEG 106 921 12 EBV BLMF1 GLCTLVAML effector T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*02:01 B2M MHCI -3881 chip0420_539025 8.11 12.03 Chip1 healthy_1 healthy TGTGCAGAGAATAAAGGTGGAGGAAGCCAAGGAAATCTCATCTTT CAENKGGGSQGNLIF TRAV13-2*01 TRAJ42*01 52.0 1964.0 CAENKGGGSQGNLIF_ 1 3920 M1 FLU 0.9 1250 NEG 113 3807 7 InfluenzaA M1 GILGFVFTL transitional T cells between effector and memory populations PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*02:01 B2M MHCI -3882 chip0420_120365 6.4 12.0 Chip1 healthy_1 healthy TGTGCCAGTAGTATAAGAAGTTCCTACGAGCAGTACTTC CASSIRSSYEQYF TRBV19*01 TRBJ2-7*01 1.0 59.0 _CASSIRSSYEQYF 36 5271 M1 FLU 0.74 1250 M1 103 5168 7 InfluenzaA M1 GILGFVFTL transitional T cells between effector and memory populations PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*02:01 B2M MHCI -3883 chip0420_641661 6.47 12.0 Chip1 healthy_1 healthy TGTGCCAGCATTAGCTTGGACCCCTTGTACTTC CASISLDPLYF TRBV2*01 TRBJ2-5*01 22.0 1635.0 _CASISLDPLYF 3 5003 M1 FLU 0.8 1250 M1 125 4878 7 InfluenzaA M1 GILGFVFTL transitional T cells between effector and memory populations PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*02:01 B2M MHCI -3884 chip0420_401511 12.11 9.34 Chip1 T1D_1 T1D TGTGCCACCCAACAGGGGAGGGACAGTCAGCCCCAGCATTTT CATQQGRDSQPQHF TRBV28*01 TRBJ1-5*01 31.0 1349.0 _CATQQGRDSQPQHF 52 2720 EBV-BLMF1 EBV 0.86 2531 NEG 119 2601 10 EBV BLMF1 GLCTLVAML effector memory T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*02:01 B2M MHCI -3885 chip0420_220304 15.1 9.63 Chip1 T1D_1 T1D TGTGCCAGCAGCCCAGTTAGCGGGTCAACCTACGAGCAGTACTTC CASSPVSGSTYEQYF TRBV3-1*01 TRBJ2-7*01 6.0 550.0 _CASSPVSGSTYEQYF 80 3134 EBV-BLMF1 EBV 0.79 2531 NEG 104 3030 12 EBV BLMF1 GLCTLVAML effector T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*02:01 B2M MHCI -3886 chip0420_38097 -3.22 8.37 Chip1 healthy_1 healthy TGTGCCAGCCAACCGAGGGACAGGGGGACGAATGAGCAGTTCTTC CASQPRDRGTNEQFF TRBV6-1*01 TRBJ2-1*01 29.0 966.0 _CASQPRDRGTNEQFF 1 5656 PGT-178 PGT 0.68 1480 NEG 87 5569 2 HomoSapiens PGT LLAGIGTVPI Naive T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*02:01 B2M MHCI -3887 chip0420_831157 8.88 14.0 Chip1 healthy_1 healthy TGTGCCGTCCCCGAGGGAGGAGGAAGCCAAGGAAATCTCATCTTT CAVPEGGGSQGNLIF TRAV12-2*01 TRAJ42*01 11.0 232.0 TGTGCCAGCATTAGCTTGGACCCCTTGTACTTC CASISLDPLYF TRBV2*01 TRBJ2-5*01 31.0 2950.0 CAVPEGGGSQGNLIF_CASISLDPLYF 1 1834 M1 FLU 0.61 1250 M1 101 1733 11 InfluenzaA M1 GILGFVFTL effector T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*02:01 B2M MHCI -3888 chip0420_717088 -4.19 9.01 Chip1 healthy_1 healthy _ 6746 4573 EBV-LMP1-1 EBV 0.4 237 NEG 87 4486 2 EBV LMP1 YLLEMLWRL Naive T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*02:01 B2M MHCI -3889 chip0420_714643 8.76 11.39 Chip1 T1D_1 T1D TGTGCCCTACATCGGGAAGGCAAATCAACCTTT CALHREGKSTF TRAV8-1*01 TRAJ27*01 24.0 2262.0 CALHREGKSTF_ 2 2851 EBV-BRLF1 EBV 0.92 1264 NEG 101 2750 7 EBV BRLF1 YVLDHLIVV transitional T cells between effector and memory populations PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*02:01 B2M MHCI -3890 chip0420_537728 11.62 11.84 Chip1 T1D_1 T1D TGTGCCAGCAGCCCCGTTAGCGGGTCAACCTACGAGCAGTACTTC CASSPVSGSTYEQYF TRAV9-1*01 TRAJ40*01 2.0 8.0 TGTGCCAGCAGCCCAGTTAGCGGGTCAACCTACGAGCAGTACTTC CASSPVSGSTYEQYF TRBV3-1*01 TRBJ2-7*01 33.0 2142.0 CASSPVSGSTYEQYF_CASSPVSGSTYEQYF 1 2491 EBV-BLMF1 EBV 0.73 2531 NEG 93 2398 10 EBV BLMF1 GLCTLVAML effector memory T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*02:01 B2M MHCI -3891 chip0420_794536 -3.62 13.45 Chip1 T1D_1 T1D TGTGCCAGCAGTTCCCCCGAGTACGAGCAGTACTTC CASSSPEYEQYF TRBV12-3*01,TRBV12-4*01 TRBJ2-7*01 62.0 4355.0 _CASSSPEYEQYF 1 3820 GP160-311-320 HIV 1.0 109 NEG 103 3717 1 HIV-1 GP160 RGPGRAFVTI Naive T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*02:01 B2M MHCI -3892 chip0420_361524 7.65 11.85 Chip1 healthy_1 healthy TGTGCAGGAGCGGGAAGCCAAGGAAATCTCATCTTT CAGAGSQGNLIF TRAV27*01 TRAJ42*01 6.0 769.0 CAGAGSQGNLIF_ 3 4600 M1 FLU 0.76 1250 M1 94 4506 7 InfluenzaA M1 GILGFVFTL transitional T cells between effector and memory populations PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*02:01 B2M MHCI -3893 chip0420_530107 10.5 8.45 Chip1 T1D_2 T1D TGCGCCAGCAGCTCAGACGGAATGAACACTGAAGCTTTCTTT CASSSDGMNTEAFF TRBV10-2*01 TRBJ1-1*01 12.0 443.0 _CASSSDGMNTEAFF 10 3970 EBV-LMP2A EBV 0.91 700 EBV-LMP2A 96 3874 10 EBV LMP2A CLGGLLTMV effector memory T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*02:01 B2M MHCI -3894 chip0420_166640 11.53 12.62 Chip1 T1D_1 T1D TGCAGTGCTAGGACCGCAGTAGGGAATGGCTACACCTTC CSARTAVGNGYTF TRBV20-1*01 TRBJ1-2*01 31.0 1761.0 _CSARTAVGNGYTF 1 2485 EBV-BLMF1 EBV 0.67 2531 NEG 115 2370 11 EBV BLMF1 GLCTLVAML effector T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*02:01 B2M MHCI -3895 chip0420_427236 4.97 10.96 Chip1 T1D_2 T1D TGCGCCAGCAGCTCAGACGGAATGAACACTGAAGCTTTCTTT CASSSDGMNTEAFF TRBV10-2*01 TRBJ1-1*01 93.0 3224.0 _CASSSDGMNTEAFF 10 2345 EBV-LMP2A EBV 0.88 700 EBV-LMP2A 93 2252 6 EBV LMP2A CLGGLLTMV central memory T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*02:01 B2M MHCI -3896 chip0420_25276 8.21 10.31 Chip1 T1D_2 T1D TGCGCCAGCAGCTTGGAGGATCAGGCCAGCTCCTACGAGCAGTACTTC CASSLEDQASSYEQYF TRBV5-1*01 TRBJ2-7*01 32.0 2017.0 _CASSLEDQASSYEQYF 1 3937 EBV-LMP2A EBV 0.95 700 EBV-LMP2A 111 3826 8 EBV LMP2A CLGGLLTMV effector memory T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*02:01 B2M MHCI -3897 chip0420_712960 15.58 10.77 Chip1 T1D_1 T1D TGCAGCGTCGGCTCCAGGGGAACTAATGAAAAACTGTTTTTT CSVGSRGTNEKLFF TRBV29-1*01 TRBJ1-4*01 72.0 3516.0 _CSVGSRGTNEKLFF 283 2036 EBV-BLMF1 EBV 0.67 2531 NEG 131 1905 12 EBV BLMF1 GLCTLVAML effector T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*02:01 B2M MHCI -3898 chip0420_346281 5.24 9.76 Chip1 T1D_1 T1D _ 6746 3864 EBV-LMP2-FLY EBV 0.87 355 NEG 105 3759 6 EBV LMP2 FLYALALLL central memory T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*02:01 B2M MHCI -3899 chip0420_850204 13.83 11.28 Chip1 T1D_1 T1D _ 6746 2462 EBV-BRLF1 EBV 0.85 1264 EBV-BRLF1 99 2363 12 EBV BRLF1 YVLDHLIVV effector T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*02:01 B2M MHCI -3900 chip0420_723564 -1.86 8.1 Chip1 T1D_1 T1D _ 6746 5781 MART1-ALA MART1 0.57 269 MART1-ALA 121 5660 2 HomoSapiens MART1 ALAGIGILTV Naive T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*02:01 B2M MHCI -3901 chip0420_573007 6.75 12.19 Chip1 healthy_1 healthy _ 6746 5005 M1 FLU 0.76 1250 M1 95 4910 7 InfluenzaA M1 GILGFVFTL transitional T cells between effector and memory populations PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*02:01 B2M MHCI -3902 chip0420_566007 -3.6 12.89 Chip1 T1D_1 T1D TGCAGCGTTGCCGGGACTAGCGGGTTGGGAGAGCAGTACTTC CSVAGTSGLGEQYF TRBV29-1*01 TRBJ2-7*01 48.0 4095.0 _CSVAGTSGLGEQYF 1 3831 PGT-178 PGT 0.62 1480 PGT-178 119 3712 1 HomoSapiens PGT LLAGIGTVPI Naive T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*02:01 B2M MHCI -3903 chip0420_432161 12.02 6.5 Chip1 T1D_1 T1D TGTGCTCTGATCTACTATGGAGGAAGCCAAGGGAATCTCATCTTT CALIYYGGSQGNLIF TRAV19*01 TRAJ42*01 60.0 2206.0 TGTGCCACTTTTCCGGACGGCTCCTACGAGCAGTACTTC CATFPDGSYEQYF TRBV28*01 TRBJ2-7*01 126.0 9783.0 CALIYYGGSQGNLIF_CATFPDGSYEQYF 2 4100 EBV-LMP1-1 EBV 0.71 237 NEG 133 3967 10 EBV LMP1 YLLEMLWRL effector memory T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*02:01 B2M MHCI -3904 chip0420_62992 -2.36 7.7 Chip1 healthy_1 healthy TGTGCCCGCAGCTTCCTATTCCCACGACAGGGAGCGCAATCAGCCCCAGCATTTT CARSFLFPR??cRERNQPQHF TRBV7-6*01 TRBJ1-5*01 22.0 503.0 _CARSFLFPR??cRERNQPQHF 1 5971 GAD65-114-122 GAD65 0.43 63 NEG 89 5882 3 HomoSapiens GAD65 VMNILLQYV Naive T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*02:01 B2M MHCI -3905 chip0420_740880 14.11 11.0 Chip1 T1D_2 T1D TGCAGCGTGGGGACAGGGGGAACTAATGAAAAACTGTTTTTT CSVGTGGTNEKLFF TRBV29-1*01 TRBJ1-4*01 83.0 3890.0 _CSVGTGGTNEKLFF 638 2112 EBV-BLMF1 EBV 0.44 2531 NEG 107 2005 12 EBV BLMF1 GLCTLVAML effector T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*02:01 B2M MHCI -3906 chip0420_311333 -3.71 8.73 Chip1 healthy_1 healthy TGTGCCGCATGGGGAAGGACGGGCACCGGGGAGCTGTTTTTT CAAWGRTGTGELFF TRBV28*01 TRBJ2-2*01 71.0 4178.0 _CAAWGRTGTGELFF 1 5096 PGT-178 PGT 0.68 1480 NEG 98 4998 2 HomoSapiens PGT LLAGIGTVPI Naive T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*02:01 B2M MHCI -3907 chip0420_154842 15.34 10.04 Chip1 T1D_1 T1D TGCGCTGACCTCGAATGCTGGCGACTGCCGTGCGCTGAATTGG CADLECW??cDCRALNW TRAV36/DV7*01 TRAJ38*01 33.0 1827.0 CADLECW??cDCRALNW_ 1 2872 EBV-BLMF1 EBV 0.82 2531 NEG 94 2778 12 EBV BLMF1 GLCTLVAML effector T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*02:01 B2M MHCI -3908 chip0420_130071 6.51 12.48 Chip1 healthy_1 healthy TGTGCCAGTAGTATAAGAAGTTCCTACGAGCAGTACTTC CASSIRSSYEQYF TRBV19*01 TRBJ2-7*01 18.0 1137.0 _CASSIRSSYEQYF 36 4936 M1 FLU 0.78 1250 M1 96 4840 7 InfluenzaA M1 GILGFVFTL transitional T cells between effector and memory populations PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*02:01 B2M MHCI -3909 chip0420_3528 13.36 13.06 Chip1 T1D_1 T1D TGTGCCAGCAGTCCGGACCAAACTAGCTCCTACAATGAGCAGTTCTTC CASSPDQTSSYNEQFF TRBV27*01 TRBJ2-1*01 28.0 1901.0 _CASSPDQTSSYNEQFF 47 1519 EBV-BRLF1 EBV 0.86 1264 NEG 103 1416 10 EBV BRLF1 YVLDHLIVV effector memory T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*02:01 B2M MHCI -3910 chip0420_830414 7.32 13.95 Chip1 T1D_1 T1D CGTGCTGTGAGTGATCGGGCTGGCGGCTTCAAAACTATCTTT RAVSDRAGGFKTIF TRAV8-4*01 TRAJ9*01 51.0 2101.0 RAVSDRAGGFKTIF_ 1 2529 M1 FLU 0.56 1250 NEG 111 2418 7 InfluenzaA M1 GILGFVFTL transitional T cells between effector and memory populations PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*02:01 B2M MHCI -3911 chip0420_726224 -2.18 9.34 Chip1 healthy_2 healthy TGTGCAGAGAGGATGGATAGCAGCTATAAATTGATCTTC CAERMDSSYKLIF TRAV5*01 TRAJ12*01 34.0 2335.0 TGTGCCAGCAGCCAAGGGTTAGCGGGGGGCGGGTACGAGCAGTACTTC CASSQGLAGGGYEQYF TRBV4-2*01 TRBJ2-7*01 5.0 270.0 CAERMDSSYKLIF_CASSQGLAGGGYEQYF 1 4828 ZNT8-VTD-9 ZNT8 0.84 65 ZNT8-VTD-9 111 4717 3 HomoSapiens ZNT8 VTDAAHLLI Naive T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*01:01 B2M MHCI -3912 chip0420_116956 6.86 11.75 Chip1 T1D_1 T1D TGTGCCAGTAGTATGCGGTCCGCCTACGAGCAGTACTTC CASSMRSAYEQYF TRBV19*01 TRBJ2-7*01 7.0 448.0 _CASSMRSAYEQYF 6 4345 M1 FLU 0.9 1250 M1 121 4224 7 InfluenzaA M1 GILGFVFTL transitional T cells between effector and memory populations PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*02:01 B2M MHCI -3913 chip0420_191731 -3.2 10.84 Chip1 T1D_3 T1D _ 6746 4212 NP44-52 FLU 0.61 474 NP44-52 104 4108 4 InfluenzaA NP CTELKLSDY Naive T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*01:01 B2M MHCI -3914 chip0420_750070 6.75 12.35 Chip1 T1D_1 T1D _ 6746 4156 EBV-BLMF1 EBV 0.7 2531 NEG 114 4042 7 EBV BLMF1 GLCTLVAML transitional T cells between effector and memory populations PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*02:01 B2M MHCI -3915 chip0420_726437 -3.86 7.85 Chip1 T1D_1 T1D _ 6746 6070 PGT-178 PGT 0.9 1480 PGT-178 102 5968 2 HomoSapiens PGT LLAGIGTVPI Naive T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*02:01 B2M MHCI -3916 chip0420_386223 14.99 11.13 Chip1 T1D_1 T1D TGTGCCAGCAGTTCCGGAGGGAACGTGGATACGCAGTATTTT CASSSGGNVDTQYF TRBV7-3*01 TRBJ2-3*01 24.0 1098.0 _CASSSGGNVDTQYF 47 2432 EBV-BLMF1 EBV 0.89 2531 NEG 82 2350 12 EBV BLMF1 GLCTLVAML effector T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*02:01 B2M MHCI -3917 chip0420_536353 6.05 12.29 Chip1 T1D_1 T1D TGCGCGTTCTGGTTCTGCAAGGCCACTGCCCTTT CAFWFtg??caRPLPF TRAV1-1*01 TRAJ22*01 25.0 2576.0 CAFWFtg??caRPLPF_ 1 4712 ZNT8-16-24 ZNT8 0.81 39 ZNT8-16-24 96 4616 7 HomoSapiens ZNT8 KMYAFTLES transitional T cells between effector and memory populations PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*02:01 B2M MHCI -3918 chip0420_349145 13.53 8.21 Chip1 T1D_1 T1D TGTGCTGTGGAACCTGCTTACTACCTCAGGAACCTACAAATACATCTTT CAVEPAYY??cSGTYKYIF TRAV2*01 TRAJ40*01 2.0 96.0 TGTGCCCGCAGTGTGCAGGAAGGTAACTATGGCTACACCTTC CARSVQEGNYGYTF TRBV6-1*01 TRBJ1-2*01 11.0 334.0 CAVEPAYY??cSGTYKYIF_CARSVQEGNYGYTF 1 2070 EBV-LMP2-FLY EBV 1.0 355 NEG 92 1978 10 EBV LMP2 FLYALALLL effector memory T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*02:01 B2M MHCI -3919 chip0420_477599 -2.96 14.34 Chip1 T1D_1 T1D _ 6746 2654 GP160-311-320 HIV 0.45 109 NEG 102 2552 1 HIV-1 GP160 RGPGRAFVTI Naive T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*02:01 B2M MHCI -3920 chip0420_282670 11.85 6.82 Chip1 T1D_1 T1D TGTGCCAGCAGCCCGGGGGACGCCCGTGGCGAGCAGTACTTC CASSPGDARGEQYF TRBV5-6*01 TRBJ2-7*01 25.0 1676.0 _CASSPGDARGEQYF 12 4086 EBV-LMP1-1 EBV 1.0 237 EBV-LMP1-1 133 3953 10 EBV LMP1 YLLEMLWRL effector memory T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*02:01 B2M MHCI -3921 chip0420_704309 -3.45 12.43 Chip1 T1D_1 T1D _ 6746 3635 PTPRN-180-188 PTPRN 0.64 18 NEG 101 3534 1 HomoSapiens PTPRN LLPPLLEHL Naive T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*02:01 B2M MHCI -3922 chip0420_514459 5.92 10.29 Chip1 T1D_1 T1D _ 6746 4466 EBV-LMP2-FLY EBV 0.92 355 NEG 103 4363 6 EBV LMP2 FLYALALLL central memory T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*02:01 B2M MHCI -3923 chip0420_304709 14.73 9.34 Chip1 T1D_1 T1D _ 6746 3243 EBV-BLMF1 EBV 0.7 2531 NEG 101 3142 12 EBV BLMF1 GLCTLVAML effector T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*02:01 B2M MHCI -3924 chip0420_213036 13.25 11.69 Chip1 T1D_2 T1D TGTGCAGAGAGTACTTCGGGAGGAAAGCTTATCTTC CAESTSGGKLIF TRAV5*01 TRAJ23*01 27.0 2043.0 TGCAGCGTGGGGACAGGGGGAACTAATGAAAAACTGTTTTTT CSVGTGGTNEKLFF TRBV29-1*01 TRBJ1-4*01 9.0 395.0 CAESTSGGKLIF_CSVGTGGTNEKLFF 107 2013 EBV-BLMF1 EBV 0.67 2531 NEG 106 1907 9 EBV BLMF1 GLCTLVAML effector memory T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*02:01 B2M MHCI -3925 chip0420_295742 7.52 8.66 Chip1 T1D_1 T1D _ 6746 7051 MART1-ALA MART1 0.49 269 MART1-ALA 116 6935 8 HomoSapiens MART1 ALAGIGILTV effector memory T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*02:01 B2M MHCI -3926 chip0420_595864 12.33 13.25 Chip1 T1D_2 T1D _ 6746 1330 EBV-BRLF1 EBV 0.93 1264 NEG 111 1219 11 EBV BRLF1 YVLDHLIVV effector T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*02:01 B2M MHCI -3927 chip0420_326174 14.53 11.86 Chip1 T1D_2 T1D TGTGTGGTGAACGGCAGGGATAGCAGCTATAAATTGCTCTTC CVVNGRDSSYKLLF TRAV12-1*01 TRAJ12*01 47.0 2053.0 CVVNGRDSSYKLLF_ 1 2089 EBV-BLMF1 EBV 0.43 2531 NEG 110 1979 12 EBV BLMF1 GLCTLVAML effector T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*02:01 B2M MHCI -3928 chip0420_823339 13.08 6.78 Chip1 T1D_1 T1D _ 6746 3317 EBV-BLMF1 EBV 0.71 2531 NEG 121 3196 10 EBV BLMF1 GLCTLVAML effector memory T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*02:01 B2M MHCI -3929 chip0420_703921 13.38 9.61 Chip1 T1D_1 T1D TGTGCCAGCAGCCAAAGCCCGGGTGGTACGCAGTATTTT CASSQSPGGTQYF TRBV14*01 TRBJ2-3*01 5.0 354.0 _CASSQSPGGTQYF 94 2625 EBV-BLMF1 EBV 1.0 2531 NEG 95 2530 10 EBV BLMF1 GLCTLVAML effector memory T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*02:01 B2M MHCI -3930 chip0420_371510 12.89 10.22 Chip1 T1D_1 T1D TGCAGTGCTAGAGACGGAACAGGGAATGGCTACACCTTC CSARDGTGNGYTF TRBV20-1*01 TRBJ1-2*01 12.0 676.0 _CSARDGTGNGYTF 14 3035 EBV-BLMF1 EBV 0.95 2531 EBV-BLMF1 109 2926 9 EBV BLMF1 GLCTLVAML effector memory T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*02:01 B2M MHCI -3931 chip0420_489784 -2.6 11.77 Chip1 T1D_1 T1D TGTGCCAGTAGTGCTGAACAGGGCATGGGAGCTTTCTTT CASSAEQGMGAFF TRBV19*01 TRBJ1-1*01 25.0 1660.0 _CASSAEQGMGAFF 1 3856 PGT-178 PGT 0.48 1480 NEG 78 3778 1 HomoSapiens PGT LLAGIGTVPI Naive T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*02:01 B2M MHCI -3932 chip0420_145191 8.17 13.95 Chip1 healthy_1 healthy _ 6746 2427 M1 FLU 0.94 1250 M1 91 2336 7 InfluenzaA M1 GILGFVFTL transitional T cells between effector and memory populations PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*02:01 B2M MHCI -3933 chip0420_14753 -2.68 8.2 Chip1 T1D_1 T1D TGCAGCGCTGGAGGGGGGGGAACTGAAGCTTTCTTT CSAGGGGTEAFF TRBV29-1*01 TRBJ1-1*01 184.0 13342.0 _CSAGGGGTEAFF 1 5365 PGT-178 PGT 0.42 1480 PGT-178 114 5251 2 HomoSapiens PGT LLAGIGTVPI Naive T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*02:01 B2M MHCI -3934 chip0420_697780 11.16 9.36 Chip1 T1D_1 T1D _ 6746 2394 EBV-BLMF1 EBV 0.96 2531 EBV-BLMF1 120 2274 10 EBV BLMF1 GLCTLVAML effector memory T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*02:01 B2M MHCI -3935 chip0420_314326 13.85 9.73 Chip1 T1D_3 T1D _ 6746 4400 BZLF1-190-197 EBV 0.46 2156 NEG 97 4303 12 EBV BZLF1 RAKFKQLL effector T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-B*08:01 B2M MHCI -3936 chip0420_15709 6.48 12.58 Chip1 T1D_1 T1D _ 6746 4638 M1 FLU 0.42 1250 NEG 106 4532 7 InfluenzaA M1 GILGFVFTL transitional T cells between effector and memory populations PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*02:01 B2M MHCI -3937 chip0420_380191 12.84 8.46 Chip1 T1D_2 T1D TGCAGCGTGGGGACAGGGGGAACTAATGAAAAACTGTTTTTT CSVGTGGTNEKLFF TRBV29-1*01 TRBJ1-4*01 28.0 1460.0 _CSVGTGGTNEKLFF 638 2017 EBV-BLMF1 EBV 0.67 2531 NEG 105 1912 10 EBV BLMF1 GLCTLVAML effector memory T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*02:01 B2M MHCI -3938 chip0420_159911 5.62 10.12 Chip1 T1D_1 T1D TGCAGTGCCATAGATACATCCGGGACAGGGGGCTACGAGCAGTACTTC CSAIDTSGTGGYEQYF TRBV20-1*01 TRBJ2-7*01 16.0 659.0 _CSAIDTSGTGGYEQYF 5 3206 HCVNS4B-1807-1816 HCV 1.0 74 NEG 99 3107 6 HCV NS4B LLFNILGGWV central memory T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*02:01 B2M MHCI -3939 chip0420_188542 12.09 7.97 Chip1 T1D_2 T1D TGTGCCAGCAGCTCGGGACTAGTCGCCCCCGGGGAGCTGTTTTTT CASSSGLVAPGELFF TRBV2*01 TRBJ2-2*01 9.0 576.0 _CASSSGLVAPGELFF 133 2696 EBV-BLMF1 EBV 1.0 2531 NEG 102 2594 10 EBV BLMF1 GLCTLVAML effector memory T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*02:01 B2M MHCI -3940 chip0420_131036 9.02 9.18 Chip1 T1D_1 T1D _ 6746 2675 EBV-BLMF1 EBV 0.89 2531 NEG 99 2576 8 EBV BLMF1 GLCTLVAML effector memory T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*02:01 B2M MHCI -3941 chip0420_128692 5.81 12.4 Chip1 T1D_1 T1D TGTGCAATGAGAGAGGATAATGCAGGCAACATGCTCACCTTT CAMREDNAGNMLTF TRAV14/DV4*01 TRAJ39*01 46.0 2343.0 CAMREDNAGNMLTF_ 5 6151 M1 FLU 0.97 1250 M1 106 6045 7 InfluenzaA M1 GILGFVFTL transitional T cells between effector and memory populations PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*02:01 B2M MHCI -3942 chip0420_403071 5.96 13.5 Chip1 T1D_1 T1D TGTGGCACTCAAGAGAATGACAGCTGGGGGAAATTGCAGTTT CGTQENDSWGKLQF TRAV30*01 TRAJ24*01 33.0 2094.0 TGTGCCAGTAGTGTCAGGGCAGGAGAGACCCAGTACTTC CASSVRAGETQYF TRBV19*01 TRBJ2-5*01 16.0 807.0 CGTQENDSWGKLQF_CASSVRAGETQYF 9 3764 M1 FLU 0.91 1250 M1 132 3632 7 InfluenzaA M1 GILGFVFTL transitional T cells between effector and memory populations PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*02:01 B2M MHCI -3943 chip0420_518087 8.27 12.53 Chip1 T1D_1 T1D _ 6746 4191 M1 FLU 0.82 1250 M1 104 4087 7 InfluenzaA M1 GILGFVFTL transitional T cells between effector and memory populations PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*02:01 B2M MHCI -3944 chip0420_40307 8.52 8.22 Chip1 T1D_1 T1D TGTGCCAGCAGTTCCGGAGGGAACGTGGATACGCAGTATTTT CASSSGGNVDTQYF TRBV7-3*01 TRBJ2-3*01 17.0 874.0 _CASSSGGNVDTQYF 47 5008 EBV-BLMF1 EBV 0.46 2531 NEG 115 4893 8 EBV BLMF1 GLCTLVAML effector memory T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*02:01 B2M MHCI -3945 chip0420_871562 12.45 13.2 Chip1 T1D_2 T1D TGCAGCGTGGGGACAGGGGGAACTAATGAAAAACTGTTTTTT CSVGTGGTNEKLFF TRBV29-1*01 TRBJ1-4*01 118.0 5403.0 _CSVGTGGTNEKLFF 638 1851 EBV-BLMF1 EBV 0.8 2531 NEG 108 1743 11 EBV BLMF1 GLCTLVAML effector T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*02:01 B2M MHCI -3946 chip0420_747283 6.26 13.02 Chip1 T1D_1 T1D TGTGCCAGTAGTTTTGGAGCCGGGGAGCTGTTTTTT CASSFGAGELFF TRBV19*01 TRBJ2-2*01 57.0 3653.0 _CASSFGAGELFF 5 5034 M1 FLU 0.94 1250 M1 99 4935 7 InfluenzaA M1 GILGFVFTL transitional T cells between effector and memory populations PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*02:01 B2M MHCI -3947 chip0420_420658 -1.54 8.69 Chip1 T1D_1 T1D TGTGCCACCAAATTGGATAGCAACAATGAGCAGTTCTTC CATKLDSNNEQFF TRBV6-1*01 TRBJ2-1*01 4.0 102.0 _CATKLDSNNEQFF 1 6512 HCV-A9N HCV 0.5 5 NEG 90 6422 4 HCV POL KLVALGINNV Naive T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*02:01 B2M MHCI -3948 chip0420_670005 10.16 10.51 Chip1 T1D_1 T1D TGTGCCAGCAGCCCAGTTAGCGGGTCAACCTACGAGCAGTACTTC CASSPVSGSTYEQYF TRBV3-1*01 TRBJ2-7*01 35.0 1705.0 _CASSPVSGSTYEQYF 80 3427 EBV-BLMF1 EBV 0.67 2531 EBV-BLMF1 120 3307 9 EBV BLMF1 GLCTLVAML effector memory T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*02:01 B2M MHCI -3949 chip0420_635885 -3.44 9.6 Chip1 T1D_1 T1D _ 6746 5197 PGT-178 PGT 0.7 1480 PGT-178 121 5076 2 HomoSapiens PGT LLAGIGTVPI Naive T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*02:01 B2M MHCI -3950 chip0420_723632 12.14 7.84 Chip1 T1D_2 T1D TGCAGCGTGGGGACAGGGGGAACTAATGAAAAACTGTTTTTT CSVGTGGTNEKLFF TRBV29-1*01 TRBJ1-4*01 94.0 3782.0 _CSVGTGGTNEKLFF 638 3105 EBV-BLMF1 EBV 0.67 2531 NEG 113 2992 10 EBV BLMF1 GLCTLVAML effector memory T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*02:01 B2M MHCI -3951 chip0420_266595 -3.85 10.5 Chip1 T1D_1 T1D TGTGCCGTGTCAGGCGGTGCAGGCAAATCAACCTTT CAVSGGAGKSTF TRAV12-2*01 TRAJ27*01 71.0 6111.0 TGTGCCAGCAGCCGGCCGGGACAGGGAGTTGAAAAACTGTTTTTT CASSRPGQGVEKLFF TRBV7-2*01 TRBJ1-4*01 20.0 798.0 CAVSGGAGKSTF_CASSRPGQGVEKLFF 1 4544 PGT-178 PGT 0.85 1480 PGT-178 111 4433 2 HomoSapiens PGT LLAGIGTVPI Naive T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*02:01 B2M MHCI -3952 chip0420_879464 12.64 8.0 Chip1 T1D_1 T1D TGCAGCGTCGGCTCCAGGGGAACTAATGAAAAACTGTTTTTT CSVGSRGTNEKLFF TRBV29-1*01 TRBJ1-4*01 102.0 5054.0 _CSVGSRGTNEKLFF 283 2369 EBV-BLMF1 EBV 0.58 2531 NEG 103 2266 10 EBV BLMF1 GLCTLVAML effector memory T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*02:01 B2M MHCI -3953 chip0420_869038 11.95 7.74 Chip1 T1D_3 T1D TGTGCTCTCCTTGGCTCTAGCAACACAGGCAAACTAATCTTT CALLGSSNTGKLIF TRAV19*01 TRAJ37*01 40.0 2165.0 TGTGCCAGCAGTCTCCACCTTCGACAGGATGAACAGCCCCAGCATTTT CASSLHLRQDEQPQHF TRBV28*01 TRBJ1-5*01 63.0 2931.0 CALLGSSNTGKLIF_CASSLHLRQDEQPQHF 2 3304 EBNA3A-158-166 EBV 1.0 444 NEG 111 3193 10 EBV EBNA3A QAKWRLQTL effector memory T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-B*08:01 B2M MHCI -3954 chip0420_87888 14.09 7.34 Chip1 T1D_1 T1D TGTGTGGTGAACGGACGGGATAGCAGCTATAAATTGATCTTC CVVNGRDSSYKLIF TRAV12-1*01 TRAJ12*01 35.0 2155.0 TGTGCCAGCAGTGACGGTCGGGTCCACCCGGGGACCCAGTACTTC CASSDGRVHPGTQYF TRBV2*01 TRBJ2-5*01 6.0 226.0 CVVNGRDSSYKLIF_CASSDGRVHPGTQYF 14 3226 EBV-BLMF1 EBV 1.0 2531 NEG 95 3131 10 EBV BLMF1 GLCTLVAML effector memory T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*02:01 B2M MHCI -3955 chip0420_370959 6.4 13.48 Chip1 T1D_1 T1D TGTGCCACCAGTGCTGTCGGGGTACCTACTGAAGCTTTCTTT CATSAVGVPTEAFF TRBV24-1*01 TRBJ1-1*01 13.0 592.0 _CATSAVGVPTEAFF 2 3564 M1 FLU 0.79 1250 M1 110 3454 7 InfluenzaA M1 GILGFVFTL transitional T cells between effector and memory populations PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*02:01 B2M MHCI -3956 chip0420_20485 -2.77 10.21 Chip1 T1D_1 T1D TGTGCCAGTAGTACAGGCCAGTTGAGCTCCTACGAGCAGTACTTC CASSTGQLSSYEQYF TRBV19*01 TRBJ2-7*01 29.0 1227.0 _CASSTGQLSSYEQYF 1 4466 PGT-178 PGT 0.95 1480 PGT-178 106 4360 2 HomoSapiens PGT LLAGIGTVPI Naive T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*02:01 B2M MHCI -3957 chip0420_638157 12.0 10.89 Chip1 T1D_1 T1D TGCAGCGTCGGCTCCAGGGGAACTAATGAAAAACTGTTTTTT CSVGSRGTNEKLFF TRBV29-1*01 TRBJ1-4*01 36.0 1759.0 _CSVGSRGTNEKLFF 283 3228 EBV-BLMF1 EBV 0.57 2531 NEG 132 3096 9 EBV BLMF1 GLCTLVAML effector memory T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*02:01 B2M MHCI -3958 chip0420_31003 14.43 11.82 Chip1 T1D_1 T1D TGCGGCCCAGCGGAACCTAACGACTACAAGCTCAGCTTT CGPAEPNDYKLSF TRAV30*01 TRAJ20*01 34.0 2150.0 CGPAEPNDYKLSF_ 4 1673 EBV-BLMF1 EBV 1.0 2531 NEG 121 1552 12 EBV BLMF1 GLCTLVAML effector T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*02:01 B2M MHCI -3959 chip0420_814773 10.02 10.68 Chip1 T1D_1 T1D _ 6746 3776 EBV-BLMF1 EBV 0.6 2531 NEG 94 3682 9 EBV BLMF1 GLCTLVAML effector memory T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*02:01 B2M MHCI -3960 chip0420_275854 5.81 11.86 Chip1 T1D_1 T1D TGTGCCGCGGGGGGGACGGGTGCCAGACTCATGTTT CAAGGTGARLMF TRAV12-2*01 TRAJ31*01 1.0 27.0 CAAGGTGARLMF_ 1 5180 PGT-178 PGT 0.54 1480 NEG 97 5083 7 HomoSapiens PGT LLAGIGTVPI transitional T cells between effector and memory populations PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*02:01 B2M MHCI -3961 chip0420_109726 7.13 14.04 Chip1 T1D_1 T1D _ 6746 2615 M1 FLU 0.93 1250 NEG 116 2499 7 InfluenzaA M1 GILGFVFTL transitional T cells between effector and memory populations PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*02:01 B2M MHCI -3962 chip0420_565479 12.26 12.88 Chip1 T1D_1 T1D TGCATCCTGAGACGCTATGGAGGAAGCCAAGGAAATCTCATCTTT CILRRYGGSQGNLIF TRAV26-2*01 TRAJ42*01 53.0 2055.0 CILRRYGGSQGNLIF_ 9 1915 EBV-BLMF1 EBV 0.69 2531 NEG 92 1823 11 EBV BLMF1 GLCTLVAML effector T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*02:01 B2M MHCI -3963 chip0420_306489 12.22 9.23 Chip1 T1D_1 T1D TGTGCCAGCAGCACGGGACAGCTATCGAACACCGGGGAGCTGTTTTTT CASSTGQLSNTGELFF TRBV9*01 TRBJ2-2*01 22.0 752.0 _CASSTGQLSNTGELFF 82 2542 EBV-BLMF1 EBV 1.0 2531 NEG 102 2440 10 EBV BLMF1 GLCTLVAML effector memory T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*02:01 B2M MHCI -3964 chip0420_782141 10.38 13.93 Chip1 T1D_1 T1D TGTGCCAGTAGTACCAGGAGCTCAGATGAGCAGTTCTTC CASSTRSSDEQFF TRBV19*01 TRBJ2-1*01 2.0 181.0 _CASSTRSSDEQFF 1 1726 M1 FLU 0.65 1250 NEG 87 1639 11 InfluenzaA M1 GILGFVFTL effector T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*02:01 B2M MHCI -3965 chip0420_494514 -2.66 14.34 Chip1 T1D_1 T1D TGCGCCAGCAGCTCCTCTGTAGTCCGGGACAGGGATGAAAACACCATATATTTT CASSSSVVRDRDENTIYF TRBV4-1*01 TRBJ1-3*01 5.0 265.0 _CASSSSVVRDRDENTIYF 1 2956 PGT-178 PGT 0.67 1480 PGT-178 113 2843 1 HomoSapiens PGT LLAGIGTVPI Naive T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*02:01 B2M MHCI -3966 chip0420_78869 4.92 11.51 Chip1 T1D_2 T1D TGTGCAGCAAAACCTAACCCCACTGCAGGCCTCTCCCCCTTT CAAKPNPTAGLSPF TRAV23/DV6*01 TRAJ27*01 4.0 181.0 CTGGCCAGCAGTTTAGGGGATTCACCCCTCCACTTT LASSLGDSPLHF TRBV12-3*01,TRBV12-4*01 TRBJ1-6*01 18.0 1336.0 CAAKPNPTAGLSPF_LASSLGDSPLHF 1 3111 PGT-178 PGT 0.5 1480 NEG 118 2993 6 HomoSapiens PGT LLAGIGTVPI central memory T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*02:01 B2M MHCI -3967 chip0420_839139 -0.28 7.03 Chip1 T1D_1 T1D TGTGCTACGGACCCGTACTCAGGAAACACACCTCTTGTCTTT CATDPYSGNTPLVF TRAV17*01 TRAJ29*01 82.0 4127.0 TGTGCCAGCAGGTCAAGATACCAAGAGACCCAGTACTTC CASRSRYQETQYF TRBV2*01 TRBJ2-5*01 53.0 3397.0 CATDPYSGNTPLVF_CASRSRYQETQYF 1 7845 ZNT8-173-181 ZNT8 0.56 27 ZNT8-173-181 95 7750 3 HomoSapiens ZNT8 IQATVMIIV Naive T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*02:01 B2M MHCI -3968 chip0420_546177 11.01 8.68 Chip1 T1D_1 T1D TGTGCCAGCAGTCCGGACCAAACTAGCTCCTACAATGAGCAGTTCTTC CASSPDQTSSYNEQFF TRBV27*01 TRBJ2-1*01 56.0 2884.0 _CASSPDQTSSYNEQFF 47 3316 EBV-BRLF1 EBV 0.79 1264 EBV-BRLF1 114 3202 10 EBV BRLF1 YVLDHLIVV effector memory T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*02:01 B2M MHCI -3969 chip0420_470888 12.35 13.13 Chip1 T1D_2 T1D _ 6746 1339 EBV-BRLF1 EBV 0.7 1264 NEG 123 1216 11 EBV BRLF1 YVLDHLIVV effector T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*02:01 B2M MHCI -3970 chip0420_759812 15.19 10.32 Chip1 T1D_1 T1D TGTGCTCTCTATAACACCGACAAGCTCATCTTT CALYNTDKLIF TRAV9-2*01 TRAJ34*01 15.0 1617.0 CALYNTDKLIF_ 10 2609 EBV-BLMF1 EBV 0.75 2531 NEG 119 2490 12 EBV BLMF1 GLCTLVAML effector T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*02:01 B2M MHCI -3971 chip0420_95728 4.97 11.62 Chip1 T1D_2 T1D _ 6746 3803 EBV-LMP2-FLY EBV 0.9 355 EBV-LMP2-FLY 95 3708 6 EBV LMP2 FLYALALLL central memory T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*02:01 B2M MHCI -3972 chip0420_773172 4.07 -0.21 Chip1 T1D_1 T1D TGTGCCAGCAGTCCGGACCAAACTAGCTCCTACAATGAGCAGTTCTTC CASSPDQTSSYNEQFF TRBV27*01 TRBJ2-1*01 70.0 3898.0 _CASSPDQTSSYNEQFF 47 1896 EBV-BRLF1 EBV 0.88 1264 EBV-BRLF1 102 1794 13 EBV BRLF1 YVLDHLIVV spike-in HCV-specific clone PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*02:01 B2M MHCI -3973 chip0420_793899 6.66 13.27 Chip1 T1D_1 T1D _ 6746 3613 M1 FLU 0.92 1250 M1 91 3522 7 InfluenzaA M1 GILGFVFTL transitional T cells between effector and memory populations PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*02:01 B2M MHCI -3974 chip0420_666268 14.17 9.19 Chip1 T1D_1 T1D TGCGGCCCAGAGGAACCTAACGACTACAAGCTCAGCTTT CGPEEPNDYKLSF TRAV30*01 TRAJ20*01 31.0 2074.0 TGTGCCAGCAGCACGGGACAGCTATCGAACACCGGGGAGCTGTTTTTT CASSTGQLSNTGELFF TRBV9*01 TRBJ2-2*01 1.0 48.0 CGPEEPNDYKLSF_CASSTGQLSNTGELFF 14 3199 EBV-BLMF1 EBV 0.6 2531 NEG 106 3093 12 EBV BLMF1 GLCTLVAML effector T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*02:01 B2M MHCI -3975 chip0420_199211 10.5 7.38 Chip1 T1D_2 T1D TGCGCCAGCAGTGAGGCCGGTATGAACACTGAAGCTTTCTTT CASSEAGMNTEAFF TRBV10-2*01 TRBJ1-1*01 1.0 37.0 _CASSEAGMNTEAFF 2 5502 EBV-LMP2A EBV 0.87 700 EBV-LMP2A 103 5399 10 EBV LMP2A CLGGLLTMV effector memory T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*02:01 B2M MHCI -3976 chip0420_846930 11.37 9.51 Chip1 T1D_1 T1D TGTGCCAGCAGCACGGGACAGCTATCGAACACCGGGGAGCTGTTTTTT CASSTGQLSNTGELFF TRBV9*01 TRBJ2-2*01 36.0 1378.0 _CASSTGQLSNTGELFF 82 3192 EBV-BLMF1 EBV 0.47 2531 NEG 103 3089 9 EBV BLMF1 GLCTLVAML effector memory T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*02:01 B2M MHCI -3977 chip0420_273121 -2.56 10.18 Chip1 T1D_1 T1D TGTGCCGTGATGGGAAGGGAATATGGAAACAAACTGGTCTTT CAVMGREYGNKLVF TRAV12-2*01 TRAJ47*01 48.0 2543.0 TGCAGCGTCTCCGGGACTAGCGGGAGCGCGTGGGGGTATGAGCAGTTCTTC CSVSGTSGSAWGYEQFF TRBV29-1*01 TRBJ2-1*01 19.0 1109.0 CAVMGREYGNKLVF_CSVSGTSGSAWGYEQFF 1 3970 GAD65-114-122 GAD65 0.78 63 GAD65-114-122 108 3862 3 HomoSapiens GAD65 VMNILLQYV Naive T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*02:01 B2M MHCI -3978 chip0420_142790 12.79 11.21 Chip1 T1D_1 T1D _ 6746 2122 EBV-BLMF1 EBV 0.8 2531 NEG 115 2007 9 EBV BLMF1 GLCTLVAML effector memory T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*02:01 B2M MHCI -3979 chip0420_9560 13.01 7.26 Chip1 T1D_2 T1D TGCGCCAGCAGAGCAGGAGCCGGGGATACGCAGTATTTT CASRAGAGDTQYF TRBV10-2*01 TRBJ2-3*01 13.0 590.0 _CASRAGAGDTQYF 59 2810 EBV-BLMF1 EBV 0.85 2531 NEG 100 2710 10 EBV BLMF1 GLCTLVAML effector memory T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*02:01 B2M MHCI -3980 chip0420_601421 9.64 10.3 Chip1 T1D_2 T1D TGCAGCGTTGGGGGCAGCTTCTATGGCTACACCTTC CSVGGSFYGYTF TRBV29-1*01 TRBJ1-2*01 71.0 7348.0 _CSVGGSFYGYTF 42 2687 EBV-BLMF1 EBV 1.0 2531 NEG 105 2582 9 EBV BLMF1 GLCTLVAML effector memory T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*02:01 B2M MHCI -3981 chip0420_476450 13.46 10.12 Chip1 T1D_1 T1D TGTGCCAGCAGTCCGGACCAAACTAGCTCCTACAATGAGCAGTTCTTC CASSPDQTSSYNEQFF TRBV27*01 TRBJ2-1*01 28.0 2181.0 _CASSPDQTSSYNEQFF 47 2996 EBV-BRLF1 EBV 0.88 1264 EBV-BRLF1 107 2889 12 EBV BRLF1 YVLDHLIVV effector T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*02:01 B2M MHCI -3982 chip0420_483300 -0.67 9.51 Chip1 T1D_1 T1D TGTGCCAGCAGCGACAGACAGGGCACAGATACGCAGTATTTT CASSDRQGTDTQYF TRBV25-1*01 TRBJ2-3*01 12.0 353.0 _CASSDRQGTDTQYF 1 6709 PGT-178 PGT 0.83 1480 PGT-178 130 6579 3 HomoSapiens PGT LLAGIGTVPI Naive T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*02:01 B2M MHCI -3983 chip0420_384867 12.22 12.35 Chip1 T1D_1 T1D _ 6746 1627 EBV-BLMF1 EBV 0.67 2531 NEG 94 1533 10 EBV BLMF1 GLCTLVAML effector memory T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*02:01 B2M MHCI -3984 chip0420_300218 10.24 10.38 Chip1 T1D_1 T1D TGTGCCAGCAGTTCCGGAGGGAACGTGGATACGCAGTATTTT CASSSGGNVDTQYF TRBV7-3*01 TRBJ2-3*01 2.0 134.0 _CASSSGGNVDTQYF 47 3218 EBV-BLMF1 EBV 1.0 2531 NEG 110 3108 9 EBV BLMF1 GLCTLVAML effector memory T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*02:01 B2M MHCI -3985 chip0420_100325 6.01 11.91 Chip1 T1D_2 T1D _ 6746 4793 EBV-LMP2A EBV 0.97 700 EBV-LMP2A 111 4682 7 EBV LMP2A CLGGLLTMV transitional T cells between effector and memory populations PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*02:01 B2M MHCI -3986 chip0420_766736 -3.34 13.56 Chip1 T1D_1 T1D _ 6746 3923 HCVNS4B-1807-1816 HCV 0.5 74 NEG 91 3832 1 HCV NS4B LLFNILGGWV Naive T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*02:01 B2M MHCI -3987 chip0420_645653 -2.82 13.59 Chip1 T1D_1 T1D TGTGCCAGCAGTGCACCGGGACACGAGTTTCGAGGCTTC CASSAPGHEFRGF TRBV2*01 TRBJ2-4*01 18.0 805.0 _CASSAPGHEFRGF 1 4632 PGT-178 PGT 0.5 1480 NEG 116 4516 1 HomoSapiens PGT LLAGIGTVPI Naive T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*02:01 B2M MHCI -3988 chip0420_611290 11.58 8.53 Chip1 T1D_2 T1D _ 6746 3138 EBV-BLMF1 EBV 0.69 2531 NEG 126 3012 10 EBV BLMF1 GLCTLVAML effector memory T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*02:01 B2M MHCI -3989 chip0420_325712 14.71 13.01 Chip1 T1D_1 T1D TGTGCCAGCAGCACGGGACAGCTATCGAACACCGGGGAGCTGTTTTTT CASSTGQLSNTGELFF TRBV9*01 TRBJ2-2*01 25.0 824.0 _CASSTGQLSNTGELFF 82 1324 EBV-BLMF1 EBV 0.42 2531 NEG 100 1224 12 EBV BLMF1 GLCTLVAML effector T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*02:01 B2M MHCI -3990 chip0420_242592 -3.97 11.72 Chip1 healthy_1 healthy _ 6746 3924 PREINS-2-10 INS 0.58 37 NEG 86 3838 1 HomoSapiens PREINS ALWMRLLPL Naive T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*02:01 B2M MHCI -3991 chip0420_240144 9.91 9.7 Chip1 T1D_1 T1D TGCAGCGTCGGCTCCAGGGGAACTAATGAAAAACTGTTTTTT CSVGSRGTNEKLFF TRBV29-1*01 TRBJ1-4*01 3.0 272.0 _CSVGSRGTNEKLFF 283 4356 EBV-BLMF1 EBV 0.8 2531 NEG 109 4247 9 EBV BLMF1 GLCTLVAML effector memory T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*02:01 B2M MHCI -3992 chip0420_706945 14.1 7.79 Chip1 T1D_1 T1D TGCGGCCCCGCGGCACCTAACGACTACAAGCTCAGCTTT CGPAAPNDYKLSF TRAV30*01 TRAJ20*01 34.0 2090.0 TGTGCCAGCAGCACGGGACAGCTATCGAACACCGGGGAGCTGTTTTTT CASSTGQLSNTGELFF TRBV9*01 TRBJ2-2*01 32.0 1781.0 CGPAAPNDYKLSF_CASSTGQLSNTGELFF 1 2698 EBV-BLMF1 EBV 0.86 2531 NEG 107 2591 10 EBV BLMF1 GLCTLVAML effector memory T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*02:01 B2M MHCI -3993 chip0420_121376 8.38 11.23 Chip1 healthy_1 healthy TGGGCTTTCATGACGAAGGCTGGTTGTCCTGGCTCTGGGAGGCTGGTATTT WAFMTKAGCPGSGRLVF TRAV38-1*01 TRAJ52*01 16.0 1385.0 TGTGCCAGCAGCTCGGGACTAGTCGCCCCCGGGGAGCTGTTTTTT CASSSGLVAPGELFF TRBV2*01 TRBJ2-2*01 1.0 41.0 WAFMTKAGCPGSGRLVF_CASSSGLVAPGELFF 1 4778 M1 FLU 0.63 1250 NEG 91 4687 7 InfluenzaA M1 GILGFVFTL transitional T cells between effector and memory populations PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*02:01 B2M MHCI -3994 chip0420_878159 13.91 8.76 Chip1 T1D_1 T1D TGTGCCGTGAAGGGGTATGACAAGATCATCTTT CAVKGYDKIIF TRAV8-1*01 TRAJ30*01 29.0 2188.0 CAVKGYDKIIF_ 3 2788 EBV-BRLF1 EBV 0.93 1264 NEG 100 2688 10 EBV BRLF1 YVLDHLIVV effector memory T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*02:01 B2M MHCI -3995 chip0420_398179 14.57 11.89 Chip1 T1D_1 T1D TGTGCCAGTAGTCCCCACTTGGGTGCGGCGGCCGAGCAGTACTTC CASSPHLGAAAEQYF TRBV19*01 TRBJ2-7*01 6.0 290.0 _CASSPHLGAAAEQYF 10 1993 EBV-BRLF1 EBV 0.79 1264 NEG 106 1887 12 EBV BRLF1 YVLDHLIVV effector T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*02:01 B2M MHCI -3996 chip0420_244389 -2.43 15.48 Chip1 T1D_1 T1D _ 6746 1407 PGT-178 PGT 0.75 1480 PGT-178 105 1302 1 HomoSapiens PGT LLAGIGTVPI Naive T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*02:01 B2M MHCI -3997 chip0420_174587 9.73 9.84 Chip1 T1D_1 T1D TGTGCCTGGCGTGGGGTTAGCGGGGCCTACAATGAGCAGTTCTTC CAWRGVSGAYNEQFF TRBV30*01 TRBJ2-1*01 22.0 1246.0 _CAWRGVSGAYNEQFF 1 3934 EBV-BRLF1 EBV 1.0 1264 EBV-BRLF1 99 3835 8 EBV BRLF1 YVLDHLIVV effector memory T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*02:01 B2M MHCI -3998 chip0420_12810 10.9 10.79 Chip1 T1D_1 T1D TGCATCCTGAGACGCTATGGAGGAAGCCAAGGAAATCTCATCTTT CILRRYGGSQGNLIF TRAV26-2*01 TRAJ42*01 4.0 239.0 CILRRYGGSQGNLIF_ 9 3243 EBV-BLMF1 EBV 0.85 2531 NEG 101 3142 9 EBV BLMF1 GLCTLVAML effector memory T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*02:01 B2M MHCI -3999 chip0420_849917 -1.67 11.94 Chip1 T1D_1 T1D TGTGCCGGGGGGAGCAACCCTGAAGCTTTCTTT CAGGSNPEAFF TRBV7-9*01 TRBJ1-1*01 5.0 187.0 _CAGGSNPEAFF 1 4236 MART1-ALA MART1 0.47 269 MART1-ALA 115 4121 3 HomoSapiens MART1 ALAGIGILTV Naive T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*02:01 B2M MHCI -4000 chip0420_399088 13.97 11.7 Chip1 T1D_1 T1D TGCAGCGTCGGCTCCAGGGGAACTAATGAAAAACTGTTTTTT CSVGSRGTNEKLFF TRBV29-1*01 TRBJ1-4*01 32.0 1950.0 _CSVGSRGTNEKLFF 283 2325 EBV-BLMF1 EBV 0.67 2531 NEG 120 2205 12 EBV BLMF1 GLCTLVAML effector T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*02:01 B2M MHCI -4001 chip0420_350464 13.81 10.99 Chip1 T1D_2 T1D _ 6746 2354 EBV-BLMF1 EBV 0.82 2531 NEG 95 2259 12 EBV BLMF1 GLCTLVAML effector T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*02:01 B2M MHCI -4002 chip0420_18841 12.83 8.29 Chip1 T1D_2 T1D TGTGCTGTGAGAGACGACAGAGATGACAAGATCATCTTT CAVRDDRDDKIIF TRAV3*01 TRAJ30*01 53.0 2296.0 CAVRDDRDDKIIF_ 4 2040 EBV-BLMF1 EBV 0.71 2531 NEG 90 1950 10 EBV BLMF1 GLCTLVAML effector memory T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*02:01 B2M MHCI -4003 chip0420_266134 8.1 13.83 Chip1 T1D_1 T1D _ 6746 3134 M1 FLU 0.92 1250 M1 111 3023 7 InfluenzaA M1 GILGFVFTL transitional T cells between effector and memory populations PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*02:01 B2M MHCI -4004 chip0420_643130 12.3 10.55 Chip1 T1D_1 T1D TGCGCCAGCAGCTTGGCCGGGTCCGGGGAGCTGTTTCTT CASSLAGSGELFL TRBV5-1*01 TRBJ2-2*01 14.0 1070.0 _CASSLAGSGELFL 1 3419 EBV-BRLF1 EBV 0.9 1264 EBV-BRLF1 116 3303 9 EBV BRLF1 YVLDHLIVV effector memory T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*02:01 B2M MHCI -4005 chip0420_587270 12.96 12.94 Chip1 T1D_2 T1D TGTGCCAGCAGCTCGGGACTAGTCGCCCCCGGGGAGCTGTTTTTT CASSSGLVAPGELFF TRBV2*01 TRBJ2-2*01 6.0 344.0 _CASSSGLVAPGELFF 133 2250 EBV-BLMF1 EBV 0.56 2531 NEG 96 2154 10 EBV BLMF1 GLCTLVAML effector memory T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*02:01 B2M MHCI -4006 chip0420_652936 11.48 8.73 Chip1 T1D_1 T1D TGTGCTGTGGAACCTGCTTACTACCTCAGGCACCTACAAATACATCTTT CAVEPAYY??cSGTYKYIF TRAV2*01 TRAJ40*01 56.0 2028.0 TGTGCCCGCAGTGTGCCGGGCGGTGACTATGGCTACACCTTC CARSVPGGDYGYTF TRBV6-1*01 TRBJ1-2*01 4.0 203.0 CAVEPAYY??cSGTYKYIF_CARSVPGGDYGYTF 1 3532 EBV-LMP2-FLY EBV 0.81 355 NEG 101 3431 10 EBV LMP2 FLYALALLL effector memory T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*02:01 B2M MHCI -4007 chip0420_105892 11.04 11.45 Chip1 T1D_1 T1D _ 6746 2578 EBV-BLMF1 EBV 0.88 2531 NEG 102 2476 9 EBV BLMF1 GLCTLVAML effector memory T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*02:01 B2M MHCI -4008 chip0420_355454 11.71 13.33 Chip1 T1D_1 T1D _ 6746 1537 EBV-BLMF1 EBV 0.88 2531 NEG 99 1438 11 EBV BLMF1 GLCTLVAML effector T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*02:01 B2M MHCI -4009 chip0420_88086 8.63 12.33 Chip1 healthy_1 healthy TGCAGCGTTGAAGGGGGAGGGTACAATGAGCAGTTCTTC CSVEGGGYNEQFF TRBV29-1*01 TRBJ2-1*01 130.0 9908.0 _CSVEGGGYNEQFF 1 3267 ROTA-VP2-1 ROTA 0.83 17 ROTA-VP2-1 103 3164 7 RotavirusA VP2 SLISGMWLL transitional T cells between effector and memory populations PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*02:01 B2M MHCI -4010 chip0420_403863 5.76 10.36 Chip1 T1D_2 T1D _ 6746 4194 EBV-LMP2-FLY EBV 1.0 355 NEG 90 4104 6 EBV LMP2 FLYALALLL central memory T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*02:01 B2M MHCI -4011 chip0420_766186 6.37 13.36 Chip1 T1D_1 T1D TGTGCCAGTAGTATAAGATCGTCCGTCGCCCAGTACTTC CASSIRSSVAQYF TRBV19*01 TRBJ2-5*01 6.0 260.0 _CASSIRSSVAQYF 1 3796 M1 FLU 0.85 1250 M1 104 3692 7 InfluenzaA M1 GILGFVFTL transitional T cells between effector and memory populations PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*02:01 B2M MHCI -4012 chip0420_478803 12.01 12.11 Chip1 T1D_1 T1D _ 6746 2131 EBV-BLMF1 EBV 0.62 2531 NEG 106 2025 11 EBV BLMF1 GLCTLVAML effector T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*02:01 B2M MHCI -4013 chip0420_468164 14.42 11.46 Chip1 T1D_2 T1D _ 6746 2527 EBV-BLMF1 EBV 0.67 2531 NEG 110 2417 12 EBV BLMF1 GLCTLVAML effector T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*02:01 B2M MHCI -4014 chip0420_191218 8.45 10.59 Chip1 T1D_3 T1D _ 6746 4171 BZLF1-190-197 EBV 0.73 2156 NEG 94 4077 8 EBV BZLF1 RAKFKQLL effector memory T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-B*08:01 B2M MHCI -4015 chip0420_402502 -2.92 8.2 Chip1 T1D_1 T1D TGTGCAACGGCAATATCTAACTTTGGAAATGAGAAATTAACCTTT CATAISNFGNEKLTF TRAV12-3*01 TRAJ48*01 18.0 867.0 TGCGCCAGCAGCTCCACTTCGAAAGACGGAATCCTAGCCAAAAACATTCAGTACTTC CASSSTSKDGILAKNIQYF TRBV5-1*01 TRBJ2-4*01 81.0 3950.0 CATAISNFGNEKLTF_CASSSTSKDGILAKNIQYF 1 5032 PGT-178 PGT 0.84 1480 PGT-178 107 4925 2 HomoSapiens PGT LLAGIGTVPI Naive T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*02:01 B2M MHCI -4016 chip0420_50435 10.49 9.9 Chip1 T1D_1 T1D _ 6746 4422 EBV-BLMF1 EBV 0.69 2531 NEG 105 4317 9 EBV BLMF1 GLCTLVAML effector memory T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*02:01 B2M MHCI -4017 chip0420_756868 12.22 13.06 Chip1 T1D_2 T1D TGTGCCAGCAGCTCGGGACTAGTCGCCCCCGGGGAGCTGTTTTTT CASSSGLVAPGELFF TRBV2*01 TRBJ2-2*01 43.0 2411.0 _CASSSGLVAPGELFF 133 2006 EBV-BLMF1 EBV 0.5 2531 NEG 120 1886 11 EBV BLMF1 GLCTLVAML effector T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*02:01 B2M MHCI -4018 chip0420_754837 -1.9 7.14 Chip1 healthy_2 healthy _ 6746 5866 MART1-ALA MART1 0.4 269 NEG 105 5761 3 HomoSapiens MART1 ALAGIGILTV Naive T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*02:01 B2M MHCI -4019 chip0420_873703 13.75 12.87 Chip1 T1D_1 T1D TGTGCTGTGAGTGATATCGGCCCGCACCTACAAATACATCTTT CAVSDIG??cRTYKYIF TRAV8-6*01 TRAJ40*01 5.0 287.0 TGTGCCAGCAGTCCGGACCAAACTAGCTCCTACAATGAGCAGTTCTTC CASSPDQTSSYNEQFF TRBV27*01 TRBJ2-1*01 19.0 1251.0 CAVSDIG??cRTYKYIF_CASSPDQTSSYNEQFF 1 1862 EBV-BRLF1 EBV 0.92 1264 NEG 111 1751 12 EBV BRLF1 YVLDHLIVV effector T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*02:01 B2M MHCI -4020 chip0420_56205 5.53 9.22 Chip1 T1D_1 T1D TGCAGCGTCGGCTCCAGGGGAACTAATGAAAAACTGTTTTTT CSVGSRGTNEKLFF TRBV29-1*01 TRBJ1-4*01 93.0 5027.0 _CSVGSRGTNEKLFF 283 3778 EBV-BLMF1 EBV 0.8 2531 NEG 120 3658 6 EBV BLMF1 GLCTLVAML central memory T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*02:01 B2M MHCI -4021 chip0420_18844 6.49 11.97 Chip1 healthy_1 healthy TGTGCCAGTTCCACAGGGTCCTATGGCTACACCTTC CASSTGSYGYTF TRBV19*01 TRBJ1-2*01 7.0 533.0 _CASSTGSYGYTF 3 5688 M1 FLU 0.89 1250 M1 84 5604 7 InfluenzaA M1 GILGFVFTL transitional T cells between effector and memory populations PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*02:01 B2M MHCI -4022 chip0420_634757 5.79 9.79 Chip1 T1D_2 T1D TGCGCCAGCAGCTTGGAGGGTCAGGCCAGCTCCTACGAGCAGTACTTC CASSLEGQASSYEQYF TRBV5-1*01 TRBJ2-7*01 42.0 2233.0 _CASSLEGQASSYEQYF 9 2415 EBV-LMP2A EBV 0.73 700 EBV-LMP2A 100 2315 6 EBV LMP2A CLGGLLTMV central memory T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*02:01 B2M MHCI -4023 chip0420_404256 13.68 10.82 Chip1 T1D_2 T1D TGTGCAGAGAGTACTTCGGGAGGAAAGCTTATCTTC CAESTSGGKLIF TRAV5*01 TRAJ23*01 10.0 617.0 TGCAGCGTGGGGACAGGGGGAACTAATGAAAAACTGTTTTTT CSVGTGGTNEKLFF TRBV29-1*01 TRBJ1-4*01 99.0 5695.0 CAESTSGGKLIF_CSVGTGGTNEKLFF 107 2553 EBV-BLMF1 EBV 0.8 2531 NEG 120 2433 9 EBV BLMF1 GLCTLVAML effector memory T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*02:01 B2M MHCI -4024 chip0420_692553 -4.54 10.46 Chip1 healthy_2 healthy _ 6746 3020 PGT-178 PGT 0.5 1480 NEG 101 2919 2 HomoSapiens PGT LLAGIGTVPI Naive T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*02:01 B2M MHCI -4025 chip0420_640110 11.13 8.92 Chip1 T1D_1 T1D _ 6746 3586 EBV-BLMF1 EBV 0.45 2531 NEG 106 3480 10 EBV BLMF1 GLCTLVAML effector memory T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*02:01 B2M MHCI -4026 chip0420_330622 15.5 10.04 Chip1 T1D_1 T1D TGTGCCGTGCATGATGGGGGCTTTCAGAAACTTGTATTT CAVHDGGFQKLVF TRAV8-1*01 TRAJ8*01 59.0 3068.0 TGTGCCAGCAGGGGCCTGACAGGGGGCGGGAGTGAAGCTTTCTTT CASRGLTGGGSEAFF TRBV28*01 TRBJ1-1*01 57.0 2516.0 CAVHDGGFQKLVF_CASRGLTGGGSEAFF 1 3330 EBV-BRLF1 EBV 0.8 1264 NEG 94 3236 12 EBV BRLF1 YVLDHLIVV effector T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*02:01 B2M MHCI -4027 chip0420_83268 -2.9 9.35 Chip1 T1D_1 T1D _ 6746 5185 IAPP-5-13 IAPP 0.47 30 IAPP-5-13 109 5076 2 HomoSapiens IAPP KLQVFLIVL Naive T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*02:01 B2M MHCI -4028 chip0420_604244 11.8 10.74 Chip1 T1D_1 T1D TGCAGCGTCGGCTCCAGGGGAACTAATGAAAAACTGTTTTTT CSVGSRGTNEKLFF TRBV29-1*01 TRBJ1-4*01 68.0 3847.0 _CSVGSRGTNEKLFF 283 2845 EBV-BLMF1 EBV 0.67 2531 NEG 98 2747 9 EBV BLMF1 GLCTLVAML effector memory T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*02:01 B2M MHCI -4029 chip0420_296599 5.88 13.22 Chip1 T1D_1 T1D TGTGGCCAGTTGTATGGGCAGCTCTGGCTACACCTTC CGQLYG??cSSGYTF TRBV19*01 TRBJ1-2*01 31.0 2008.0 _CGQLYG??cSSGYTF 1 4035 M1 FLU 0.8 1250 M1 121 3914 7 InfluenzaA M1 GILGFVFTL transitional T cells between effector and memory populations PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*02:01 B2M MHCI -4030 chip0420_260149 5.81 12.84 Chip1 T1D_1 T1D TGTGCCAGTAGTATTCGGTGCTCCTACGAGCAGTACTTC CASSIRCSYEQYF TRBV19*01 TRBJ2-7*01 26.0 1668.0 _CASSIRCSYEQYF 1 5753 M1 FLU 0.82 1250 M1 98 5655 7 InfluenzaA M1 GILGFVFTL transitional T cells between effector and memory populations PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*02:01 B2M MHCI -4031 chip0420_527399 5.88 12.57 Chip1 healthy_1 healthy TGTGCCAGTAGTATAAGAAGTTCCTACGAGCAGTACCCC CASSIRSSYEQYP TRBV19*01 TRBJ2-7*01 17.0 756.0 _CASSIRSSYEQYP 1 4892 M1 FLU 0.93 1250 M1 98 4794 7 InfluenzaA M1 GILGFVFTL transitional T cells between effector and memory populations PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*02:01 B2M MHCI -4032 chip0420_713945 11.87 12.05 Chip1 T1D_1 T1D TGTGCCGTGAAGGACACCGACAAGCCCATCTTC CAVKDTDKPIF TRAV8-1*01 TRAJ34*01 1.0 34.0 TGTGCCAGTAGTCCCCACTTGGGTGCGGCGGCCGAGCAGTACTTC CASSPHLGAAAEQYF TRBV19*01 TRBJ2-7*01 12.0 301.0 CAVKDTDKPIF_CASSPHLGAAAEQYF 1 2282 EBV-BRLF1 EBV 0.84 1264 EBV-BRLF1 100 2182 10 EBV BRLF1 YVLDHLIVV effector memory T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*02:01 B2M MHCI -4033 chip0420_395053 8.09 13.66 Chip1 T1D_1 T1D TGTGCCAGTAGTATGCGGTCCGCCTACGAGCAGTACTTC CASSMRSAYEQYF TRBV19*01 TRBJ2-7*01 40.0 2746.0 _CASSMRSAYEQYF 6 3449 M1 FLU 0.8 1250 NEG 111 3338 7 InfluenzaA M1 GILGFVFTL transitional T cells between effector and memory populations PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*02:01 B2M MHCI -4034 chip0420_473389 15.62 9.69 Chip1 T1D_2 T1D TGCAGCGTGGGGACAAGGGGAACTAATGAAAAACTGTTTTTT CSVGTRGTNEKLFF TRBV29-1*01 TRBJ1-4*01 63.0 3341.0 _CSVGTRGTNEKLFF 3 2835 EBV-BLMF1 EBV 0.75 2531 NEG 107 2728 12 EBV BLMF1 GLCTLVAML effector T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*02:01 B2M MHCI -4035 chip0420_118917 13.96 12.93 Chip1 T1D_1 T1D _ 6746 1858 EBV-BLMF1 EBV 0.8 2531 NEG 99 1759 12 EBV BLMF1 GLCTLVAML effector T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*02:01 B2M MHCI -4036 chip0420_266113 13.3 7.87 Chip1 T1D_2 T1D TGTGCCGTGAAGGACACCGACAAGCTCATCTTT CAVKDTDKLIF TRAV8-1*01 TRAJ34*01 1.0 48.0 CAVKDTDKLIF_ 56 3288 EBV-BRLF1 EBV 0.69 1264 EBV-BRLF1 108 3180 10 EBV BRLF1 YVLDHLIVV effector memory T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*02:01 B2M MHCI -4037 chip0420_807357 -3.75 8.97 Chip1 T1D_1 T1D _ 6746 4779 CVB3-P3A CVB 0.4 77 NEG 110 4669 2 CoxsackievirusB P3A GIIYIIYKL Naive T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*02:01 B2M MHCI -4038 chip0420_484188 12.94 8.37 Chip1 T1D_1 T1D _ 6746 1763 EBV-BLMF1 EBV 0.75 2531 NEG 89 1674 10 EBV BLMF1 GLCTLVAML effector memory T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*02:01 B2M MHCI -4039 chip0420_46272 14.62 10.5 Chip1 T1D_1 T1D _ 6746 2830 EBV-BLMF1 EBV 0.86 2531 NEG 117 2713 12 EBV BLMF1 GLCTLVAML effector T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*02:01 B2M MHCI -4040 chip0420_569776 5.1 9.58 Chip1 T1D_1 T1D _ 6746 3336 EBV-LMP2-FLY EBV 1.0 355 EBV-LMP2-FLY 119 3217 6 EBV LMP2 FLYALALLL central memory T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*02:01 B2M MHCI -4041 chip0420_288277 8.45 10.47 Chip1 T1D_2 T1D _ 6746 4166 EBV-BLMF1 EBV 0.5 2531 NEG 120 4046 8 EBV BLMF1 GLCTLVAML effector memory T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*02:01 B2M MHCI -4042 chip0420_507635 9.55 10.42 Chip1 T1D_1 T1D _ 6746 4398 EBV-BRLF1 EBV 0.97 1264 EBV-BRLF1 89 4309 9 EBV BRLF1 YVLDHLIVV effector memory T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*02:01 B2M MHCI -4043 chip0420_287402 12.35 12.97 Chip1 T1D_1 T1D TGTGCCAGCAGTCCGGACCAAACTAGCTCCTACAATGAGCAGTTCTTC CASSPDQTSSYNEQFF TRBV27*01 TRBJ2-1*01 29.0 1768.0 _CASSPDQTSSYNEQFF 47 1945 EBV-BRLF1 EBV 0.83 1264 NEG 98 1847 11 EBV BRLF1 YVLDHLIVV effector T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*02:01 B2M MHCI -4044 chip0420_798634 8.24 13.26 Chip1 healthy_1 healthy _ 6746 2654 M1 FLU 0.89 1250 M1 88 2566 7 InfluenzaA M1 GILGFVFTL transitional T cells between effector and memory populations PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*02:01 B2M MHCI -4045 chip0420_614707 12.05 8.04 Chip1 T1D_1 T1D TGTGCCAGCAGTGCCGGGACAGTTGCACCCGGGGAGCTGTTTTTT CASSAGTVAPGELFF TRBV2*01 TRBJ2-2*01 31.0 1871.0 _CASSAGTVAPGELFF 21 3262 EBV-BLMF1 EBV 0.61 2531 NEG 108 3154 10 EBV BLMF1 GLCTLVAML effector memory T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*02:01 B2M MHCI -4046 chip0420_55699 9.11 8.7 Chip1 T1D_2 T1D TGCAGCGTGGGGACAGGGGGAACTAATGAAAAACTGTTTTTT CSVGTGGTNEKLFF TRBV29-1*01 TRBJ1-4*01 79.0 4269.0 _CSVGTGGTNEKLFF 638 4569 EBV-BLMF1 EBV 0.8 2531 NEG 104 4465 8 EBV BLMF1 GLCTLVAML effector memory T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*02:01 B2M MHCI -4047 chip0420_380465 8.05 11.89 Chip1 T1D_1 T1D TGTGCCAGTAGTTTTCGGTCGGCAGATACGCAGTATTTT CASSFRSADTQYF TRBV19*01 TRBJ2-3*01 20.0 1276.0 _CASSFRSADTQYF 2 3942 M1 FLU 0.89 1250 M1 102 3840 7 InfluenzaA M1 GILGFVFTL transitional T cells between effector and memory populations PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*02:01 B2M MHCI -4048 chip0420_73979 -2.51 8.85 Chip1 T1D_1 T1D _ 6746 5886 PGT-178 PGT 0.73 1480 PGT-178 97 5789 3 HomoSapiens PGT LLAGIGTVPI Naive T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*02:01 B2M MHCI -4049 chip0420_796945 15.55 10.78 Chip1 T1D_2 T1D TGCAGCGTGGGGACAGGGGGAACTAATGAAAAACTGTTTTTT CSVGTGGTNEKLFF TRBV29-1*01 TRBJ1-4*01 51.0 2248.0 _CSVGTGGTNEKLFF 638 2358 EBV-BLMF1 EBV 0.67 2531 NEG 122 2236 12 EBV BLMF1 GLCTLVAML effector T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*02:01 B2M MHCI -4050 chip0420_284050 15.9 10.36 Chip1 T1D_1 T1D _ 6746 2369 EBV-BLMF1 EBV 0.56 2531 NEG 96 2273 12 EBV BLMF1 GLCTLVAML effector T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*02:01 B2M MHCI -4051 chip0420_872900 14.32 10.28 Chip1 T1D_1 T1D TGTGCCAGCAGCCAAAGCCCGGGTGGTACGCAGTATTTT CASSQSPGGTQYF TRBV14*01 TRBJ2-3*01 13.0 697.0 _CASSQSPGGTQYF 94 2895 EBV-BLMF1 EBV 1.0 2531 NEG 107 2788 12 EBV BLMF1 GLCTLVAML effector T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*02:01 B2M MHCI -4052 chip0420_715154 5.66 9.46 Chip1 healthy_2 healthy TGTGCAATGAGAGAGGGGGCTGTGGAGAGCCAATAGTAAGCTGACATTT CAMREGAV??gRANSKLTF TRAV14/DV4*01 TRAJ56*01 63.0 2480.0 TGTGCCACCCATATAGATCATTGGGACAGGGGTTTGCCGCAGTATTTT CATHIDHWDRGLPQYF TRBV19*01 TRBJ2-3*01 7.0 253.0 CAMREGAV??gRANSKLTF_CATHIDHWDRGLPQYF 1 4595 ZNT8-173-181 ZNT8 0.62 27 NEG 114 4481 6 HomoSapiens ZNT8 IQATVMIIV central memory T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*02:01 B2M MHCI -4053 chip0420_672552 -3.26 8.87 Chip1 T1D_1 T1D TGTGCATTTCTTATATCTAACTTTGGAAATGAGAAATTAACCTTT CAFLISNFGNEKLTF TRAV12-3*01 TRAJ48*01 44.0 2031.0 TGTGCCAGCAGTTTATCCGAACAGGGCCGTACCGAGGAGACCCAGTACTTC CASSLSEQGRTEETQYF TRBV12-3*01,TRBV12-4*01 TRBJ2-5*01 6.0 174.0 CAFLISNFGNEKLTF_CASSLSEQGRTEETQYF 1 6394 PGT-178 PGT 0.72 1480 PGT-178 121 6273 2 HomoSapiens PGT LLAGIGTVPI Naive T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*02:01 B2M MHCI -4054 chip0420_87585 0.13 4.57 Chip1 T1D_1 T1D _ 6746 6687 HCV-L2I HCV 0.5 9 NEG 112 6575 5 HCV POL KIVALGINAV natural killer-like T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*02:01 B2M MHCI -4055 chip0420_640598 6.88 9.49 Chip1 T1D_1 T1D _ 6746 6040 EBV-LMP2-FLY EBV 0.9 355 EBV-LMP2-FLY 92 5948 6 EBV LMP2 FLYALALLL central memory T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*02:01 B2M MHCI -4056 chip0420_658942 -1.13 10.14 Chip1 T1D_1 T1D _ 6746 4920 PGT-178 PGT 0.85 1480 PGT-178 100 4820 3 HomoSapiens PGT LLAGIGTVPI Naive T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*02:01 B2M MHCI -4057 chip0420_76173 8.99 8.4 Chip1 T1D_1 T1D TGCAGCGTCGGCTCCAGGGGAACTAATGAAAAACTGTTTTTT CSVGSRGTNEKLFF TRBV29-1*01 TRBJ1-4*01 59.0 3431.0 _CSVGSRGTNEKLFF 283 4203 EBV-BLMF1 EBV 0.72 2531 NEG 111 4092 8 EBV BLMF1 GLCTLVAML effector memory T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*02:01 B2M MHCI -4058 chip0420_738200 9.91 9.17 Chip1 T1D_1 T1D _ 6746 5677 EBV-BRLF1 EBV 0.91 1264 EBV-BRLF1 110 5567 8 EBV BRLF1 YVLDHLIVV effector memory T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*02:01 B2M MHCI -4059 chip0420_401480 13.45 9.3 Chip1 T1D_1 T1D _ 6746 3117 EBV-BLMF1 EBV 0.88 2531 NEG 111 3006 10 EBV BLMF1 GLCTLVAML effector memory T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*02:01 B2M MHCI -4060 chip0420_244524 -4.25 11.72 Chip1 T1D_1 T1D _ 6746 4210 PGT-178 PGT 0.49 1480 PGT-178 83 4127 1 HomoSapiens PGT LLAGIGTVPI Naive T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*02:01 B2M MHCI -4061 chip0420_122486 -1.59 11.47 Chip1 T1D_1 T1D TGTGCAATGAGCCCATCTAACTTTGGAAATGAGAAATTAACCTTT CAMSPSNFGNEKLTF TRAV12-3*01 TRAJ48*01 53.0 2011.0 TGTGCCAGCAGTGAAGAGGGACTCAGCCTCGGACAGTACTTC CASSEEGLSLGQYF TRBV6-1*01 TRBJ2-7*01 2.0 42.0 CAMSPSNFGNEKLTF_CASSEEGLSLGQYF 1 3760 PGT-178 PGT 0.89 1480 PGT-178 120 3640 3 HomoSapiens PGT LLAGIGTVPI Naive T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*02:01 B2M MHCI -4062 chip0420_669009 -3.17 10.79 Chip1 healthy_1 healthy _ 6746 4160 HCVNS4B-1807-1816 HCV 0.69 74 HCVNS4B-1807-1816 90 4070 4 HCV NS4B LLFNILGGWV Naive T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*02:01 B2M MHCI -4063 chip0420_240303 7.57 13.4 Chip1 T1D_1 T1D _ 6746 3989 M1 FLU 0.82 1250 NEG 122 3867 7 InfluenzaA M1 GILGFVFTL transitional T cells between effector and memory populations PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*02:01 B2M MHCI -4064 chip0420_114102 6.09 13.9 Chip1 T1D_1 T1D _ 6746 4176 M1 FLU 0.46 1250 NEG 98 4078 7 InfluenzaA M1 GILGFVFTL transitional T cells between effector and memory populations PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*02:01 B2M MHCI -4065 chip0420_835054 6.15 12.45 Chip1 healthy_2 healthy _ 6746 3631 M1 FLU 0.64 1250 M1 96 3535 7 InfluenzaA M1 GILGFVFTL transitional T cells between effector and memory populations PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*02:01 B2M MHCI -4066 chip0420_192774 13.49 10.02 Chip1 T1D_1 T1D TGCAGCGTCACAACCGACAGGAATAGCAATCAGCCCCAGCATTTT CSVTTDRNSNQPQHF TRBV29-1*01 TRBJ1-5*01 68.0 3342.0 _CSVTTDRNSNQPQHF 10 3544 EBV-BLMF1 EBV 0.43 2531 NEG 105 3439 12 EBV BLMF1 GLCTLVAML effector T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*02:01 B2M MHCI -4067 chip0420_578718 -4.05 12.73 Chip1 T1D_1 T1D _ 6746 3269 M1 FLU 0.54 1250 NEG 93 3176 1 InfluenzaA M1 GILGFVFTL Naive T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*02:01 B2M MHCI -4068 chip0420_203535 9.66 7.66 Chip1 T1D_1 T1D TGCAGCGTCGGCTCCAGGGGAACTAATGAAAAACTGTTTTTT CSVGSRGTNEKLFF TRBV29-1*01 TRBJ1-4*01 69.0 2846.0 _CSVGSRGTNEKLFF 283 2716 EBV-BLMF1 EBV 0.5 2531 NEG 117 2599 8 EBV BLMF1 GLCTLVAML effector memory T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*02:01 B2M MHCI -4069 chip0420_716149 14.17 9.73 Chip1 T1D_1 T1D _ 6746 3337 EBV-BLMF1 EBV 0.7 2531 NEG 112 3225 12 EBV BLMF1 GLCTLVAML effector T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*02:01 B2M MHCI -4070 chip0420_463383 6.14 12.29 Chip1 healthy_1 healthy _ 6746 5522 M1 FLU 1.0 1250 M1 94 5428 7 InfluenzaA M1 GILGFVFTL transitional T cells between effector and memory populations PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*02:01 B2M MHCI -4071 chip0420_850651 11.96 10.74 Chip1 T1D_1 T1D TGTGCTCTAGGAGCACGGCCAGGAGGAAGCTACATACCTACATTT CALGARPGGSYIPTF TRAV6*01 TRAJ6*01 27.0 994.0 CALGARPGGSYIPTF_ 1 3739 EBV-BLMF1 EBV 0.62 2531 NEG 98 3641 9 EBV BLMF1 GLCTLVAML effector memory T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*02:01 B2M MHCI -4072 chip0420_452443 15.64 11.05 Chip1 T1D_1 T1D _ 6746 1726 EBV-BLMF1 EBV 0.83 2531 NEG 121 1605 12 EBV BLMF1 GLCTLVAML effector T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*02:01 B2M MHCI -4073 chip0420_496572 12.14 13.59 Chip1 T1D_2 T1D TGCAGCGTGGGGACAGGGGGAACTAATGAAAAACTGTCTTTT CSVGTGGTNEKLSF TRBV29-1*01 TRBJ1-4*01 22.0 1281.0 _CSVGTGGTNEKLSF 3 1355 EBV-BLMF1 EBV 0.5 2531 NEG 110 1245 11 EBV BLMF1 GLCTLVAML effector T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*02:01 B2M MHCI -4074 chip0420_420422 10.88 8.68 Chip1 T1D_2 T1D TGTGCCAGCAGTGGAGGGGCGGTCGCGCCGAGTGAGCAGTTCTTC CASSGGAVAPSEQFF TRBV2*01 TRBJ2-1*01 47.0 2829.0 _CASSGGAVAPSEQFF 6 3327 EBV-BLMF1 EBV 0.56 2531 NEG 92 3235 10 EBV BLMF1 GLCTLVAML effector memory T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*02:01 B2M MHCI -4075 chip0420_7306 7.51 13.49 Chip1 T1D_1 T1D CGTGCAATGAGAGAGGATAATGCAGGCAACATGCTCACCTTT RAMREDNAGNMLTF TRAV14/DV4*01 TRAJ39*01 38.0 2042.0 RAMREDNAGNMLTF_ 1 3067 M1 FLU 0.87 1250 M1 103 2964 7 InfluenzaA M1 GILGFVFTL transitional T cells between effector and memory populations PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*02:01 B2M MHCI -4076 chip0420_94709 9.96 9.91 Chip1 T1D_2 T1D TGTGCAGCGTATGCAGGCAACATGCTCACCTTT CAAYAGNMLTF TRAV29/DV5*01 TRAJ39*01 1.0 201.0 TGCGCCAGCAGAGCGGGAGCCGGGGATACGCAGTATTTT CASRAGAGDTQYF TRBV10-2*01 TRBJ2-3*01 12.0 1099.0 CAAYAGNMLTF_CASRAGAGDTQYF 18 3185 EBV-BLMF1 EBV 0.86 2531 NEG 123 3062 9 EBV BLMF1 GLCTLVAML effector memory T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*02:01 B2M MHCI -4077 chip0420_509695 10.75 11.8 Chip1 T1D_2 T1D TGCAGCGACAGAGACGGAGGAAACTATGGCTACACCTTC CSDRDGGNYGYTF TRBV29-1*01 TRBJ1-2*01 100.0 5727.0 _CSDRDGGNYGYTF 7 2500 EBV-BRLF1 EBV 0.95 1264 EBV-BRLF1 98 2402 9 EBV BRLF1 YVLDHLIVV effector memory T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*02:01 B2M MHCI -4078 chip0420_317698 0.17 9.1 Chip1 T1D_1 T1D TGTGCCAGCAGCTTAGACCTGCAGGACTCCTACGAGCAGTACTTC CASSLDLQDSYEQYF TRBV11-2*01 TRBJ2-7*01 3.0 94.0 _CASSLDLQDSYEQYF 1 3644 ZNT8-186-194 ZNT8 0.9 22 ZNT8-186-194 102 3542 4 HomoSapiens ZNT8 VAANIVLTV Naive T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*02:01 B2M MHCI -4079 chip0420_59287 10.08 10.03 Chip1 T1D_2 T1D TGTGCCAGCAGCTCGGGACTAGTCGCCCCCGGGGAGCTGTTTTTT CASSSGLVAPGELFF TRBV2*01 TRBJ2-2*01 51.0 2531.0 _CASSSGLVAPGELFF 133 5072 EBV-BLMF1 EBV 0.91 2531 NEG 109 4963 9 EBV BLMF1 GLCTLVAML effector memory T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*02:01 B2M MHCI -4080 chip0420_813393 14.78 13.02 Chip1 healthy_1 healthy CTGTGCCAGTAGTATAAGCAGTTCCTACGAGCAGTACTTC LCQ*YKca??gtSYEQYF TRBV19*01 TRBJ2-7*01 21.0 1030.0 _LCQ*YKca??gtSYEQYF 1 1707 M1 FLU 0.62 1250 M1 95 1612 12 InfluenzaA M1 GILGFVFTL effector T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*02:01 B2M MHCI -4081 chip0420_481470 11.86 8.6 Chip1 T1D_1 T1D TGTGTGGTGAACGGGGAGGATAGCAGCTATAAATTGATCTTC CVVNGEDSSYKLIF TRAV12-1*01 TRAJ12*01 14.0 477.0 TGTGCCAGCAGTTCGGGACAGGTACTTCCCAATGAGCAGTTCTTC CASSSGQVLPNEQFF TRBV2*01 TRBJ2-1*01 87.0 4760.0 CVVNGEDSSYKLIF_CASSSGQVLPNEQFF 1 2618 EBV-BLMF1 EBV 0.6 2531 NEG 103 2515 10 EBV BLMF1 GLCTLVAML effector memory T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*02:01 B2M MHCI -4082 chip0420_154791 -4.47 8.63 Chip1 T1D_1 T1D TGTGCCAGCGGGCTCCGGGACACCGGCCCCTACGAGCAGTACTTC CASGLRDTGPYEQYF TRBV13*01 TRBJ2-7*01 16.0 1063.0 _CASGLRDTGPYEQYF 1 5470 PTPRN-805-813 PTPRN 0.65 11 PTPRN-805-813 109 5361 2 HomoSapiens PTPRN VIVMLTPLV Naive T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*02:01 B2M MHCI -4083 chip0420_783073 7.03 13.26 Chip1 T1D_1 T1D TGTGCCAGTAGTATCAGGTCGGCATACGAGCAGTACTTC CASSIRSAYEQYF TRBV19*01 TRBJ2-7*01 23.0 1575.0 _CASSIRSAYEQYF 11 3075 M1 FLU 0.77 1250 M1 122 2953 7 InfluenzaA M1 GILGFVFTL transitional T cells between effector and memory populations PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*02:01 B2M MHCI -4084 chip0420_713143 9.66 10.87 Chip1 T1D_2 T1D TGTGCCAGCAACTTAGCGGGGAACAATGAGCAGTTCTTC CASNLAGNNEQFF TRBV9*01 TRBJ2-1*01 10.0 650.0 _CASNLAGNNEQFF 15 4651 EBV-BLMF1 EBV 0.87 2531 EBV-BLMF1 106 4545 9 EBV BLMF1 GLCTLVAML effector memory T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*02:01 B2M MHCI -4085 chip0420_189313 13.72 9.74 Chip1 T1D_1 T1D TGTGCCAGCAGCCCAGTTAGCGGGTCAACCTACGAGCAGTACTTC CASSPVSGSTYEQYF TRBV3-1*01 TRBJ2-7*01 30.0 2001.0 _CASSPVSGSTYEQYF 80 4292 EBV-BLMF1 EBV 0.93 2531 NEG 120 4172 12 EBV BLMF1 GLCTLVAML effector T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*02:01 B2M MHCI -4086 chip0420_544678 11.17 10.69 Chip1 T1D_2 T1D TGTGCCAGCAGCTCGGGACTAGTCGCCCCCGGGGAGCTGTTTTTT CASSSGLVAPGELFF TRBV2*01 TRBJ2-2*01 33.0 2115.0 _CASSSGLVAPGELFF 133 3334 EBV-BLMF1 EBV 0.83 2531 NEG 123 3211 9 EBV BLMF1 GLCTLVAML effector memory T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*02:01 B2M MHCI -4087 chip0420_550552 -3.76 10.89 Chip1 healthy_1 healthy TGTGCCAGCAGCTCAGGGGTCAGCGGGGAGCTGTTTTTT CASSSGVSGELFF TRBV7-8*01 TRBJ2-2*01 17.0 784.0 _CASSSGVSGELFF 1 4250 MART1-ALA MART1 0.71 269 NEG 94 4156 2 HomoSapiens MART1 ALAGIGILTV Naive T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*02:01 B2M MHCI -4088 chip0420_310159 9.19 10.31 Chip1 T1D_2 T1D TGTGCCGTCTTCGAGGATAGCAACTATCAGTTAATCTGG CAVFEDSNYQLIW TRAV8-1*01 TRAJ33*01 30.0 2169.0 CAVFEDSNYQLIW_ 1 4110 GP160-311-320 HIV 0.82 109 NEG 107 4003 9 HIV-1 GP160 RGPGRAFVTI effector memory T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*02:01 B2M MHCI -4089 chip0420_307303 15.55 8.99 Chip1 T1D_1 T1D TGTGCCAGCAGCACGGGACAGCTATCGAACACCGGGGAGCTGTTTTTT CASSTGQLSNTGELFF TRBV9*01 TRBJ2-2*01 36.0 1939.0 _CASSTGQLSNTGELFF 82 4213 EBV-BLMF1 EBV 0.61 2531 NEG 110 4103 12 EBV BLMF1 GLCTLVAML effector T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*02:01 B2M MHCI -4090 chip0420_179687 5.35 11.09 Chip1 tet_neg TGTGCTACGGCTGGGGTTTCCGGATACAGCACCCTCACCTTT CATAGVSGYSTLTF TRAV17*01 TRAJ11*01 7.0 296.0 CATAGVSGYSTLTF_ 1 6008 NP140-148 FLU 0.5 102 NEG 95 5913 6 InfluenzaA NP HSNLNDATY central memory T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*01:01 B2M MHCI -4091 chip0420_10189 -3.98 9.36 Chip1 T1D_1 T1D TGCGCCAGCAGTCAAAAGTCTCCGGCTAGCGGGATGAGAGGCGAGAGACCCAGTACTTC CASSQKSPAag?RDERRETQYF TRBV4-3*01 TRBJ2-5*01 12.0 393.0 _CASSQKSPAag?RDERRETQYF 1 6780 ZNT8-115-123 ZNT8 0.78 74 ZNT8-115-123 105 6675 2 HomoSapiens ZNT8 LLSLFSLWL Naive T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*02:01 B2M MHCI -4092 chip0420_763567 13.31 10.89 Chip1 T1D_1 T1D _ 6746 2632 EBV-BLMF1 EBV 1.0 2531 NEG 91 2541 9 EBV BLMF1 GLCTLVAML effector memory T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*02:01 B2M MHCI -4093 chip0420_500624 -3.28 8.33 Chip1 healthy_1 healthy TGTGCCGTGAATGAGAAGGGAAACAAGCTGGTCTTT CAVNEKGNKLVF TRAV8-1*01 TRAJ47*01 1.0 48.0 CAVNEKGNKLVF_ 1 5443 PTPRN-180-188 PTPRN 0.75 18 PTPRN-180-188 102 5341 2 HomoSapiens PTPRN LLPPLLEHL Naive T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*02:01 B2M MHCI -4094 chip0420_205789 -1.91 9.52 Chip1 healthy_2 healthy TGTGCCAGCAGCTTATTCTCGCGAATCGAGCAGTACCTC CASSLFSRIEQYL TRBV7-9*01 TRBJ2-7*01 13.0 1014.0 _CASSLFSRIEQYL 1 4669 PGT-178 PGT 0.54 1480 PGT-178 106 4563 3 HomoSapiens PGT LLAGIGTVPI Naive T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*02:01 B2M MHCI -4095 chip0420_157286 7.31 13.61 Chip1 T1D_1 T1D _ 6746 3137 M1 FLU 0.56 1250 NEG 109 3028 7 InfluenzaA M1 GILGFVFTL transitional T cells between effector and memory populations PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*02:01 B2M MHCI -4096 chip0420_692090 7.04 13.69 Chip1 T1D_1 T1D _ 6746 2999 M1 FLU 0.74 1250 M1 96 2903 7 InfluenzaA M1 GILGFVFTL transitional T cells between effector and memory populations PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*02:01 B2M MHCI -4097 chip0420_687756 15.04 8.87 Chip1 T1D_1 T1D TGCGGCACAGCGGAACCTAACGACTACAAGCTCAGCTTT CGTAEPNDYKLSF TRAV30*01 TRAJ20*01 30.0 2045.0 CGTAEPNDYKLSF_ 3 1738 EBV-BLMF1 EBV 0.57 2531 NEG 108 1630 12 EBV BLMF1 GLCTLVAML effector T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*02:01 B2M MHCI -4098 chip0420_250235 -5.03 9.71 Chip1 healthy_1 healthy _ 6746 3959 HCV-K1S HCV 0.67 10 NEG 97 3862 2 HCV POL SLVALGINAV Naive T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*02:01 B2M MHCI -4099 chip0420_772230 -3.57 12.78 Chip1 T1D_1 T1D TGTGCCAGCAGTCAGGGGGCTGGTTGGGATGAGCAGTTCTTC CASSQGAGWDEQFF TRBV2*01 TRBJ2-1*01 26.0 2032.0 _CASSQGAGWDEQFF 1 4075 VPR-59-67 HIV 0.84 16 VPR-59-67 109 3966 1 HIV-1 VPR AIIRILQQL Naive T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*02:01 B2M MHCI -4100 chip0420_210150 -4.4 11.07 Chip1 T1D_1 T1D TGTGCCAGCAGCCAAGATAGGGGGATAGCGCGAAACAATGAGCAGTTCTTC CASSQDRGIARNNEQFF TRBV3-1*01 TRBJ2-1*01 57.0 2212.0 _CASSQDRGIARNNEQFF 1 3233 PGT-178 PGT 0.9 1480 PGT-178 94 3139 1 HomoSapiens PGT LLAGIGTVPI Naive T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*02:01 B2M MHCI -4101 chip0420_763130 10.73 11.26 Chip1 T1D_2 T1D _ 6746 2412 EBV-BLMF1 EBV 1.0 2531 NEG 108 2304 9 EBV BLMF1 GLCTLVAML effector memory T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*02:01 B2M MHCI -4102 chip0420_755207 11.79 13.32 Chip1 T1D_1 T1D _ 6746 1432 EBV-BLMF1 EBV 0.75 2531 NEG 83 1349 11 EBV BLMF1 GLCTLVAML effector T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*02:01 B2M MHCI -4103 chip0420_586083 7.23 10.47 Chip1 healthy_1 healthy TGCGCCAGCAGCGCGGGACAGGGACTTCCCTACGAGCAGTACTTC CASSAGQGLPYEQYF TRBV5-1*01 TRBJ2-7*01 34.0 1982.0 _CASSAGQGLPYEQYF 9 6767 M1 FLU 0.83 1250 M1 93 6674 7 InfluenzaA M1 GILGFVFTL transitional T cells between effector and memory populations PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*02:01 B2M MHCI -4104 chip0420_511417 11.84 9.55 Chip1 T1D_2 T1D TGTGCAGAGGGAAGCCAAGGAAATCTCATCTTT CAEGSQGNLIF TRAV5*01 TRAJ42*01 1.0 29.0 TGCAGCGTTGGGGGCAGCTTCTATGGCTACACCTTC CSVGGSFYGYTF TRBV29-1*01 TRBJ1-2*01 57.0 4361.0 CAEGSQGNLIF_CSVGGSFYGYTF 2 2857 EBV-BLMF1 EBV 1.0 2531 NEG 123 2734 10 EBV BLMF1 GLCTLVAML effector memory T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*02:01 B2M MHCI -4105 chip0420_851327 9.41 8.28 Chip1 T1D_2 T1D TGCGCCAGCAGCTTGGAGGGTCAGGCCAGCTCCTACGAGCAGTACTTC CASSLEGQASSYEQYF TRBV5-1*01 TRBJ2-7*01 70.0 3517.0 _CASSLEGQASSYEQYF 9 4631 EBV-LMP2A EBV 0.88 700 EBV-LMP2A 112 4519 8 EBV LMP2A CLGGLLTMV effector memory T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*02:01 B2M MHCI -4106 chip0420_699687 11.93 13.24 Chip1 T1D_1 T1D TGTGCCGTGAAGGACACCGACAAGCTCATCTTT CAVKDTDKLIF TRAV8-1*01 TRAJ34*01 1.0 40.0 CAVKDTDKLIF_ 56 1578 EBV-BRLF1 EBV 1.0 1264 NEG 82 1496 11 EBV BRLF1 YVLDHLIVV effector T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*02:01 B2M MHCI -4107 chip0420_666356 15.96 11.23 Chip1 T1D_1 T1D TGTGTGGTGAACGGACGAGATAGCAGCTATAAATTGATCTTC CVVNGRDSSYKLIF TRAV12-1*01 TRAJ12*01 38.0 2142.0 TGTGCCAGCAGTGACGGTCGGGTCCACCCGGGGACCCAGTACTTC CASSDGRVHPGTQYF TRBV2*01 TRBJ2-5*01 48.0 2267.0 CVVNGRDSSYKLIF_CASSDGRVHPGTQYF 14 1944 EBV-BLMF1 EBV 0.67 2531 NEG 105 1839 12 EBV BLMF1 GLCTLVAML effector T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*02:01 B2M MHCI -4108 chip0420_563800 -2.4 12.03 Chip1 T1D_1 T1D _ 6746 3873 PGT-178 PGT 0.69 1480 PGT-178 104 3769 1 HomoSapiens PGT LLAGIGTVPI Naive T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*02:01 B2M MHCI -4109 chip0420_404608 6.91 12.74 Chip1 T1D_2 T1D _ 6746 3436 MART1-ALA MART1 1.0 269 NEG 110 3326 7 HomoSapiens MART1 ALAGIGILTV transitional T cells between effector and memory populations PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*02:01 B2M MHCI -4110 chip0420_125932 15.82 10.15 Chip1 T1D_1 T1D TGCGGCCCAGAGGAACCTAACGACTACAAGCTCAGCTTT CGPEEPNDYKLSF TRAV30*01 TRAJ20*01 30.0 2145.0 TGTGCCAGCAGCACGGGACAGCTATCGAACACCGGGGAGCTGTTTTTT CASSTGQLSNTGELFF TRBV9*01 TRBJ2-2*01 12.0 416.0 CGPEEPNDYKLSF_CASSTGQLSNTGELFF 14 4327 EBV-BLMF1 EBV 0.47 2531 NEG 88 4239 12 EBV BLMF1 GLCTLVAML effector T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*02:01 B2M MHCI -4111 chip0420_815086 -2.93 9.81 Chip1 T1D_1 T1D _ 6746 5256 HCVNS4B-1807-1816 HCV 0.83 74 HCVNS4B-1807-1816 101 5155 2 HCV NS4B LLFNILGGWV Naive T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*02:01 B2M MHCI -4112 chip0420_646460 6.22 12.29 Chip1 T1D_1 T1D TGTGCCAGTAGTTCTGGGGCTTATGGCTACACCTTC CASSSGAYGYTF TRBV19*01 TRBJ1-2*01 31.0 2539.0 _CASSSGAYGYTF 6 4827 M1 FLU 0.68 1250 M1 105 4722 7 InfluenzaA M1 GILGFVFTL transitional T cells between effector and memory populations PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*02:01 B2M MHCI -4113 chip0420_826351 -3.87 12.75 Chip1 T1D_1 T1D _ 6746 4577 PTPRN-805-813 PTPRN 0.86 11 PTPRN-805-813 104 4473 1 HomoSapiens PTPRN VIVMLTPLV Naive T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*02:01 B2M MHCI -4114 chip0420_257046 -1.76 9.3 Chip1 T1D_1 T1D TGTGCTCCTGGCTCCTCTGGGGCTGGGAGTTACCAACTCACTTTC CAPGSSGAGSYQLTF TRAV17*01 TRAJ28*01 66.0 2022.0 TGTGCCTGGGAGTGGGTCCTCGGGAATGAGCAGTTCTTC CAWEWVLGNEQFF TRBV30*01 TRBJ2-1*01 33.0 1613.0 CAPGSSGAGSYQLTF_CAWEWVLGNEQFF 1 4778 PGT-178 PGT 0.64 1480 PGT-178 90 4688 4 HomoSapiens PGT LLAGIGTVPI Naive T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*02:01 B2M MHCI -4115 chip0420_200083 -1.8 11.19 Chip1 T1D_1 T1D TGCAGTGCTAGGGCTTTAGCGGGAGCGTTGGGCGAGCAGTACTTC CSARALAGALGEQYF TRBV20-1*01 TRBJ2-7*01 40.0 2032.0 _CSARALAGALGEQYF 1 5634 PGT-178 PGT 0.79 1480 PGT-178 87 5547 3 HomoSapiens PGT LLAGIGTVPI Naive T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*02:01 B2M MHCI -4116 chip0420_829634 5.92 13.65 Chip1 T1D_1 T1D TGTGCAGGGAATTATGGAGGAAGCCAAGGAAATCTCCTCTTT CAGNYGGSQGNLLF TRAV25*01 TRAJ42*01 48.0 2221.0 CAGNYGGSQGNLLF_ 2 3312 M1 FLU 0.88 1250 M1 91 3221 7 InfluenzaA M1 GILGFVFTL transitional T cells between effector and memory populations PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*02:01 B2M MHCI -4117 chip0420_847979 5.92 13.14 Chip1 T1D_1 T1D _ 6746 6097 M1 FLU 0.9 1250 M1 100 5997 7 InfluenzaA M1 GILGFVFTL transitional T cells between effector and memory populations PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*02:01 B2M MHCI -4118 chip0420_317463 5.91 12.37 Chip1 healthy_1 healthy _ 6746 5210 M1 FLU 0.73 1250 NEG 98 5112 7 InfluenzaA M1 GILGFVFTL transitional T cells between effector and memory populations PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*02:01 B2M MHCI -4119 chip0420_738308 9.62 9.45 Chip1 T1D_1 T1D _ 6746 4242 EBV-BRLF1 EBV 0.85 1264 EBV-BRLF1 114 4128 8 EBV BRLF1 YVLDHLIVV effector memory T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*02:01 B2M MHCI -4120 chip0420_680674 6.91 13.32 Chip1 T1D_1 T1D _ 6746 3313 M1 FLU 0.9 1250 M1 92 3221 7 InfluenzaA M1 GILGFVFTL transitional T cells between effector and memory populations PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*02:01 B2M MHCI -4121 chip0420_336606 6.82 12.28 Chip1 healthy_2 healthy TGTGCCAGCAGCTTAGGGCTTCTAGGAAATGAGCAGTTCTTC CASSLGLLGNEQFF TRBV7-2*01 TRBJ2-1*01 105.0 5552.0 _CASSLGLLGNEQFF 1 4525 MART1-ALA MART1 0.54 269 MART1-ALA 90 4435 7 HomoSapiens MART1 ALAGIGILTV transitional T cells between effector and memory populations PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*02:01 B2M MHCI -4122 chip0420_602329 10.91 12.01 Chip1 T1D_1 T1D _ 6746 2893 EBV-BRLF1 EBV 0.88 1264 EBV-BRLF1 117 2776 9 EBV BRLF1 YVLDHLIVV effector memory T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*02:01 B2M MHCI -4123 chip0420_377239 15.84 10.6 Chip1 T1D_1 T1D _ 6746 2455 EBV-BRLF1 EBV 0.82 1264 NEG 90 2365 12 EBV BRLF1 YVLDHLIVV effector T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*02:01 B2M MHCI -4124 chip0420_349761 -2.82 8.39 Chip1 healthy_1 healthy TGCAGCGTTGAAGGGGGAACGAACACCGGGGAGCTGTTTTTT CSVEGGTNTGELFF TRBV29-1*01 TRBJ2-2*01 206.0 11945.0 _CSVEGGTNTGELFF 1 4600 ZNT8-186-194 ZNT8 0.94 22 ZNT8-186-194 91 4509 3 HomoSapiens ZNT8 VAANIVLTV Naive T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*02:01 B2M MHCI -4125 chip0420_43912 12.88 7.57 Chip1 T1D_2 T1D TGCAGCGTCGGCTCCAGAGGAACTAATGAAAAACTGTTTTTT CSVGSRGTNEKLFF TRBV29-1*01 TRBJ1-4*01 2.0 52.0 _CSVGSRGTNEKLFF 283 2619 EBV-BLMF1 EBV 0.6 2531 NEG 111 2508 10 EBV BLMF1 GLCTLVAML effector memory T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*02:01 B2M MHCI -4126 chip0420_870915 5.79 12.43 Chip1 T1D_1 T1D TGTGCAGGTCCCCGTCGACCGGTAACCAGTTCTATTTT CAGPRRc?cGNQFYF TRAV27*01 TRAJ49*01 1.0 40.0 TGCAGCGTGTGCATACTAGCCCAGAATTACAATGAGCAGCTCTTC CSVCILAQNYNEQLF TRBV29-1*01 TRBJ2-1*01 4.0 90.0 CAGPRRc?cGNQFYF_CSVCILAQNYNEQLF 1 4365 M1 FLU 0.72 1250 M1 115 4250 7 InfluenzaA M1 GILGFVFTL transitional T cells between effector and memory populations PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*02:01 B2M MHCI -4127 chip0420_656289 5.97 12.6 Chip1 T1D_1 T1D _ 6746 5237 M1 FLU 0.86 1250 NEG 91 5146 7 InfluenzaA M1 GILGFVFTL transitional T cells between effector and memory populations PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*02:01 B2M MHCI -4128 chip0420_867824 16.08 10.16 Chip1 T1D_1 T1D TGTGCCAGCAGCCGAAGCCCGGGTGGTACGCAGTTTTTT CASSRSPGGTQFF TRBV14*01 TRBJ2-3*01 7.0 226.0 _CASSRSPGGTQFF 1 2389 EBV-BLMF1 EBV 0.41 2531 NEG 105 2284 12 EBV BLMF1 GLCTLVAML effector T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*02:01 B2M MHCI -4129 chip0420_822438 -4.17 11.32 Chip1 T1D_1 T1D TGTGCCAGCAGTTACTCGGGAGGCAATGAGCAGTTCTTC CASSYSGGNEQFF TRBV6-5*01 TRBJ2-1*01 1.0 76.0 _CASSYSGGNEQFF 1 4288 PGT-178 PGT 0.44 1480 PGT-178 95 4193 1 HomoSapiens PGT LLAGIGTVPI Naive T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*02:01 B2M MHCI -4130 chip0420_286860 13.68 10.15 Chip1 T1D_1 T1D TGTGCCAGCAGTGACGGTCGGGTCCACCCGGGGACCCAGTACTTC CASSDGRVHPGTQYF TRBV2*01 TRBJ2-5*01 38.0 2141.0 _CASSDGRVHPGTQYF 24 4055 EBV-BLMF1 EBV 1.0 2531 NEG 95 3960 12 EBV BLMF1 GLCTLVAML effector T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*02:01 B2M MHCI -4131 chip0420_53472 12.65 10.61 Chip1 T1D_1 T1D TGCATCCTGAGACGCTATGGCGGCAGCCAAGGAAATCTCATCTTT CILRRYGGSQGNLIF TRAV26-2*01 TRAJ42*01 52.0 2055.0 CILRRYGGSQGNLIF_ 9 2674 EBV-BLMF1 EBV 0.92 2531 NEG 105 2569 9 EBV BLMF1 GLCTLVAML effector memory T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*02:01 B2M MHCI -4132 chip0420_37778 6.06 12.59 Chip1 T1D_1 T1D TGTGCCAGCAGTTTGTACCGGGGGAACACTGAAGCTTTCTTT CASSLYRGNTEAFF TRAV24*01 TRAJ40*01 2.0 36.0 TGTGCCAGCAGTTTGTACCGGGGGAACACTGAAGCTTTCTTT CASSLYRGNTEAFF TRBV28*01 TRBJ1-1*01 11.0 559.0 CASSLYRGNTEAFF_CASSLYRGNTEAFF 1 5101 M1 FLU 0.81 1250 M1 96 5005 7 InfluenzaA M1 GILGFVFTL transitional T cells between effector and memory populations PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*02:01 B2M MHCI -4133 chip0420_842497 9.82 12.69 Chip1 T1D_3 T1D _ 6746 2368 BZLF1-190-197 EBV 0.82 2156 NEG 97 2271 11 EBV BZLF1 RAKFKQLL effector T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-B*08:01 B2M MHCI -4134 chip0420_456876 12.32 7.02 Chip1 T1D_2 T1D _ 6746 3097 EBV-BLMF1 EBV 0.6 2531 NEG 121 2976 10 EBV BLMF1 GLCTLVAML effector memory T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*02:01 B2M MHCI -4135 chip0420_55164 12.03 7.64 Chip1 T1D_1 T1D TGCAGCGTCGGCTCCAGGGGAACTAATGAAAAACTGTTTTTT CSVGSRGTNEKLFF TRBV29-1*01 TRBJ1-4*01 76.0 4285.0 _CSVGSRGTNEKLFF 283 2689 EBV-BLMF1 EBV 0.6 2531 NEG 108 2581 10 EBV BLMF1 GLCTLVAML effector memory T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*02:01 B2M MHCI -4136 chip0420_574083 11.26 12.61 Chip1 T1D_1 T1D TGCAGCGTCGGCTCCAGGGGAACTAATGAAAAACTGTTTTTT CSVGSRGTNEKLFF TRBV29-1*01 TRBJ1-4*01 42.0 1732.0 _CSVGSRGTNEKLFF 283 2350 EBV-BLMF1 EBV 0.8 2531 NEG 98 2252 11 EBV BLMF1 GLCTLVAML effector T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*02:01 B2M MHCI -4137 chip0420_123361 6.6 14.58 Chip1 T1D_1 T1D _ 6746 3779 M1 FLU 0.74 1250 NEG 107 3672 7 InfluenzaA M1 GILGFVFTL transitional T cells between effector and memory populations PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*02:01 B2M MHCI -4138 chip0420_81560 13.73 8.4 Chip1 T1D_1 T1D TGTGCCAGCAGTCCCATCAATGAGCAGTTCTTC CASSPINEQFF TRBV6-1*01 TRBJ2-1*01 1.0 21.0 _CASSPINEQFF 2 2555 EBV-BRLF1 EBV 1.0 1264 NEG 104 2451 10 EBV BRLF1 YVLDHLIVV effector memory T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*02:01 B2M MHCI -4139 chip0420_469280 10.41 7.93 Chip1 T1D_1 T1D TGTGCCAGCAGCACGGGACAGCTATCGAACACCGGGGAGCTGTTTTTT CASSTGQLSNTGELFF TRBV9*01 TRBJ2-2*01 24.0 884.0 _CASSTGQLSNTGELFF 82 4331 EBV-BLMF1 EBV 0.5 2531 NEG 101 4230 10 EBV BLMF1 GLCTLVAML effector memory T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*02:01 B2M MHCI -4140 chip0420_554395 11.24 7.32 Chip1 healthy_2 healthy _ 6746 4393 EBV-LMP2-FLY EBV 0.86 355 NEG 78 4315 10 EBV LMP2 FLYALALLL effector memory T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*02:01 B2M MHCI -4141 chip0420_436757 -3.52 11.45 Chip1 T1D_2 T1D _ 6746 4342 PGT-178 PGT 0.77 1480 PGT-178 116 4226 1 HomoSapiens PGT LLAGIGTVPI Naive T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*02:01 B2M MHCI -4142 chip0420_319083 8.61 9.85 Chip1 healthy_1 healthy _ 6746 4720 M1 FLU 0.61 1250 M1 79 4641 8 InfluenzaA M1 GILGFVFTL effector memory T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*02:01 B2M MHCI -4143 chip0420_307508 8.73 11.49 Chip1 T1D_1 T1D TGTGCCAGCAGCCAAGTGATAACTATCAATGAGCAGTTCTTC CASSQVITINEQFF TRBV3-1*01 TRBJ2-1*01 53.0 3652.0 _CASSQVITINEQFF 1 3420 EBV-BRLF1 EBV 1.0 1264 NEG 106 3314 7 EBV BRLF1 YVLDHLIVV transitional T cells between effector and memory populations PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*02:01 B2M MHCI -4144 chip0420_621676 11.97 11.92 Chip1 healthy_2 healthy _ 6746 2675 BZLF1-190-197 EBV 0.57 2156 NEG 109 2566 11 EBV BZLF1 RAKFKQLL effector T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-B*08:01 B2M MHCI -4145 chip0420_619563 9.36 8.04 Chip1 tet_neg TGTGCCAGCAGCCAAAGCCCGGGTGGTACGCAGTATTTT CASSQSPGGTQYF TRBV14*01 TRBJ2-3*01 6.0 271.0 _CASSQSPGGTQYF 94 5376 EBV-BLMF1 EBV 0.58 2531 NEG 120 5256 8 EBV BLMF1 GLCTLVAML effector memory T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*02:01 B2M MHCI -4146 chip0420_274901 11.78 7.44 Chip1 T1D_1 T1D TGTGCTCTAAAGGACACCGACAAGCTCATCTTT CALKDTDKLIF TRAV16*01 TRAJ34*01 24.0 2146.0 CALKDTDKLIF_ 2 3056 EBV-BRLF1 EBV 0.97 1264 EBV-BRLF1 131 2925 10 EBV BRLF1 YVLDHLIVV effector memory T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*02:01 B2M MHCI -4147 chip0420_243406 11.34 8.31 Chip1 T1D_1 T1D TGTGCAGAGAGTACAAGTGGGGGAAAGCTTATCTTC CAESTSGGKLIF TRAV5*01 TRAJ23*01 25.0 2032.0 TGCAGCGTCGGCTCCAGGGGAACTAATGAAAAACTGTTTTTT CSVGSRGTNEKLFF TRBV29-1*01 TRBJ1-4*01 283.0 14635.0 CAESTSGGKLIF_CSVGSRGTNEKLFF 19 3902 EBV-BLMF1 EBV 0.67 2531 NEG 99 3803 10 EBV BLMF1 GLCTLVAML effector memory T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*02:01 B2M MHCI -4148 chip0420_135292 6.3 13.57 Chip1 healthy_1 healthy _ 6746 3956 M1 FLU 0.64 1250 M1 97 3859 7 InfluenzaA M1 GILGFVFTL transitional T cells between effector and memory populations PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*02:01 B2M MHCI -4149 chip0420_725344 11.88 6.86 Chip1 T1D_1 T1D TGTGCCAGCAGCCCGGGGGACGCCCGTGGCGAGCAGTACTTC CASSPGDARGEQYF TRBV5-6*01 TRBJ2-7*01 28.0 1863.0 _CASSPGDARGEQYF 12 4191 EBV-LMP1-1 EBV 0.8 237 NEG 108 4083 10 EBV LMP1 YLLEMLWRL effector memory T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*02:01 B2M MHCI -4150 chip0420_704848 5.86 13.55 Chip1 T1D_1 T1D TGTGCTGTGTGGACAGGAGGAGGTGCTGACGGACTCACCTTT CAVWTGGGADGLTF TRAV21*01 TRAJ45*01 2.0 41.0 CTGTGCCCGTAATTTTGTGGGCGGGCCTTCAGATACGCAGCATTTT LCP*FCGcg??ggPSDTQHF TRBV19*01 TRBJ2-3*01 4.0 176.0 CAVWTGGGADGLTF_LCP*FCGcg??ggPSDTQHF 1 5232 M1 FLU 0.87 1250 NEG 112 5120 7 InfluenzaA M1 GILGFVFTL transitional T cells between effector and memory populations PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*02:01 B2M MHCI -4151 chip0420_602096 11.79 13.43 Chip1 T1D_2 T1D TGCGCCAGCAGTCAATCGAGAGGGTCGCTCTGGGATACGCAGTATTTT CASSQSRGSLWDTQYF TRBV4-3*01 TRBJ2-3*01 7.0 292.0 _CASSQSRGSLWDTQYF 21 1185 EBV-BRLF1 EBV 0.93 1264 NEG 97 1088 11 EBV BRLF1 YVLDHLIVV effector T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*02:01 B2M MHCI -4152 chip0420_773416 5.88 13.4 Chip1 healthy_1 healthy TGCGCCAGCAGCGCGGGACAGGGACTTCCCTACGAGCAGTACTTC CASSAGQGLPYEQYF TRBV5-1*01 TRBJ2-7*01 27.0 1597.0 _CASSAGQGLPYEQYF 9 5081 M1 FLU 0.96 1250 M1 100 4981 7 InfluenzaA M1 GILGFVFTL transitional T cells between effector and memory populations PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*02:01 B2M MHCI -4153 chip0420_577422 7.42 13.43 Chip1 T1D_3 T1D _ 6746 2899 BZLF1-190-197 EBV 0.79 2156 BZLF1-190-197 93 2806 7 EBV BZLF1 RAKFKQLL transitional T cells between effector and memory populations PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-B*08:01 B2M MHCI -4154 chip0420_195675 5.99 12.18 Chip1 healthy_1 healthy TGTGCCTATGGAGATGGAGGAAGCCAAGGAAATCTCATCTTT CAYGDGGSQGNLIF TRAV24*01 TRAJ42*01 53.0 2160.0 CAYGDGGSQGNLIF_ 1 5885 M1 FLU 0.83 1250 M1 97 5788 7 InfluenzaA M1 GILGFVFTL transitional T cells between effector and memory populations PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*02:01 B2M MHCI -4155 chip0420_763688 -2.62 14.52 Chip1 T1D_1 T1D TGTGCTGGAGTTCCGGATAGCAACTATCAGTTAATCTGG CAGVPDSNYQLIW TRAV27*01 TRAJ33*01 12.0 431.0 TGTGCCAGCAGCGCCGGTGGCGGGGGGGGTCAAGAGACCCAGTACTTC CASSAGGGGGQETQYF TRBV9*01 TRBJ2-5*01 37.0 1675.0 CAGVPDSNYQLIW_CASSAGGGGGQETQYF 1 3336 ZNT8-173-181 ZNT8 0.63 27 ZNT8-173-181 76 3260 1 HomoSapiens ZNT8 IQATVMIIV Naive T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*02:01 B2M MHCI -4156 chip0420_781508 4.8 11.01 Chip1 healthy_2 healthy _ 6746 2134 GP160-311-320 HIV 0.44 109 NEG 107 2027 6 HIV-1 GP160 RGPGRAFVTI central memory T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*02:01 B2M MHCI -4157 chip0420_648912 -2.02 9.29 Chip1 healthy_2 healthy TGTGCCAGCAGCCAAGTCCACCGGGGTCGCTCTGGAGCTTTCTTT CASSQVHRGRSGAFF TRBV4-2*01 TRBJ1-1*01 2.0 49.0 _CASSQVHRGRSGAFF 1 6547 Nef90-97 HIV 0.81 8 Nef90-97 104 6443 3 HIV-1 Nef FLKEKGGL Naive T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-B*08:01 B2M MHCI -4158 chip0420_426310 11.82 8.47 Chip1 T1D_1 T1D TGTGCTGACTTATAATGCTGGCACCTACCCTACGCTGATCTGG CADL*CW??cTYPTLIW TRAV36/DV7*01 TRAJ38*01 35.0 1928.0 TGTGCCAGCAGCACGGGACAGCTATCGAACACCGGGGAGCTGTTTTTT CASSTGQLSNTGELFF TRBV9*01 TRBJ2-2*01 28.0 1364.0 CADL*CW??cTYPTLIW_CASSTGQLSNTGELFF 1 3087 EBV-BLMF1 EBV 0.47 2531 NEG 101 2986 10 EBV BLMF1 GLCTLVAML effector memory T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*02:01 B2M MHCI -4159 chip0420_105668 6.69 12.68 Chip1 healthy_1 healthy TGTGCTCTAAGTGGCCCGAATTCAGGAAACACACCTCTTGTCTTT CALSGPNSGNTPLVF TRAV16*01 TRAJ29*01 3.0 259.0 CALSGPNSGNTPLVF_ 1 4055 M1 FLU 0.65 1250 M1 97 3958 7 InfluenzaA M1 GILGFVFTL transitional T cells between effector and memory populations PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*02:01 B2M MHCI -4160 chip0420_93600 14.93 13.06 Chip1 T1D_1 T1D TGTGCCAGCAGCCCAGTTAGCGGGTCAACCTACGAGCAGTACTTC CASSPVSGSTYEQYF TRBV3-1*01 TRBJ2-7*01 32.0 1974.0 _CASSPVSGSTYEQYF 80 1081 EBV-BLMF1 EBV 1.0 2531 NEG 85 996 12 EBV BLMF1 GLCTLVAML effector T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*02:01 B2M MHCI -4161 chip0420_770130 7.67 13.82 Chip1 T1D_1 T1D _ 6746 2368 M1 FLU 0.75 1250 NEG 119 2249 7 InfluenzaA M1 GILGFVFTL transitional T cells between effector and memory populations PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*02:01 B2M MHCI -4162 chip0420_391706 9.7 11.95 Chip1 T1D_2 T1D _ 6746 3532 EBV-BLMF1 EBV 1.0 2531 NEG 108 3424 7 EBV BLMF1 GLCTLVAML transitional T cells between effector and memory populations PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*02:01 B2M MHCI -4163 chip0420_757751 13.49 11.18 Chip1 T1D_1 T1D TGTGCCGTGAAGGACACCGACAAGCTCATCTTT CAVKDTDKLIF TRAV8-1*01 TRAJ34*01 34.0 2291.0 TGTGCCATCAGTGAGGGGACGCTGAGCTCCTACAATGAGCAGTTCCTC CAISEGTLSSYNEQFL TRBV10-3*01 TRBJ2-1*01 33.0 1263.0 CAVKDTDKLIF_CAISEGTLSSYNEQFL 1 2401 EBV-BRLF1 EBV 0.94 1264 EBV-BRLF1 106 2295 10 EBV BRLF1 YVLDHLIVV effector memory T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*02:01 B2M MHCI -4164 chip0420_592994 -3.85 10.12 Chip1 healthy_1 healthy _ 6746 4323 EBV-LMP2A EBV 0.78 700 EBV-LMP2A 93 4230 2 EBV LMP2A CLGGLLTMV Naive T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*02:01 B2M MHCI -4165 chip0420_463809 -0.81 10.15 Chip1 T1D_2 T1D TGTGCCGCGGCGAATGCTGGTGGTACTCGCTATGGCAAGCTGACATTT CAAANAGGTRYGKLTF TRAV12-2*01 TRAJ52*01 99.0 2446.0 TGTGCCAGTAGTATAGTGATGGGTGGCCAGCCCCAGCATTTT CASSIVMGGQPQHF TRBV19*01 TRBJ1-5*01 23.0 947.0 CAAANAGGTRYGKLTF_CASSIVMGGQPQHF 1 5080 PGT-178 PGT 0.44 1480 NEG 83 4997 3 HomoSapiens PGT LLAGIGTVPI Naive T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*02:01 B2M MHCI -4166 chip0420_591293 -4.7 9.61 Chip1 healthy_1 healthy TGTGTTTTTTCCGGAGGTGCTGACGGACTCACCTTT CVFSGGADGLTF TRAV12-1*01 TRAJ45*01 24.0 2045.0 CVFSGGADGLTF_ 1 5111 PGT-178 PGT 0.89 1480 PGT-178 101 5010 2 HomoSapiens PGT LLAGIGTVPI Naive T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*02:01 B2M MHCI -4167 chip0420_440884 6.35 12.94 Chip1 healthy_1 healthy _ 6746 4399 M1 FLU 0.92 1250 M1 103 4296 7 InfluenzaA M1 GILGFVFTL transitional T cells between effector and memory populations PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*02:01 B2M MHCI -4168 chip0420_386064 14.38 10.26 Chip1 T1D_1 T1D TGTGCTGTGCGTGATTTGGGAATGACATGCGCTTT CAVRDtt?GNDMRF TRAV8-4*01 TRAJ43*01 30.0 2167.0 TGCAGCGTCGGCTCCAGGGGAACTAATGAAAAACTGTTTTTT CSVGSRGTNEKLFF TRBV29-1*01 TRBJ1-4*01 83.0 5925.0 CAVRDtt?GNDMRF_CSVGSRGTNEKLFF 1 1792 EBV-BLMF1 EBV 0.62 2531 NEG 76 1716 12 EBV BLMF1 GLCTLVAML effector T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*02:01 B2M MHCI -4169 chip0420_341239 5.87 13.43 Chip1 T1D_3 T1D _ 6746 4228 NP44-52 FLU 0.9 474 NP44-52 90 4138 7 InfluenzaA NP CTELKLSDY transitional T cells between effector and memory populations PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*01:01 B2M MHCI -4170 chip0420_818381 8.17 13.83 Chip1 healthy_1 healthy TGTGCAGGAGCAGCTGGCTCTAGCAACACAGGCAAACTAATCTTT CAGAAGSSNTGKLIF TRAV27*01 TRAJ37*01 2.0 82.0 CAGAAGSSNTGKLIF_ 1 2355 M1 FLU 0.81 1250 NEG 100 2255 7 InfluenzaA M1 GILGFVFTL transitional T cells between effector and memory populations PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*02:01 B2M MHCI -4171 chip0420_687452 15.88 11.03 Chip1 T1D_1 T1D TGTGCCACCCAACAAGGGAGGGACAGTCAGCCCCAGCATTTT CATQQGRDSQPQHF TRBV28*01 TRBJ1-5*01 6.0 150.0 _CATQQGRDSQPQHF 52 1886 EBV-BLMF1 EBV 0.62 2531 NEG 106 1780 12 EBV BLMF1 GLCTLVAML effector T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*02:01 B2M MHCI -4172 chip0420_518311 7.75 14.16 Chip1 healthy_1 healthy _ 6746 2501 M1 FLU 0.86 1250 M1 107 2394 7 InfluenzaA M1 GILGFVFTL transitional T cells between effector and memory populations PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*02:01 B2M MHCI -4173 chip0420_137663 8.05 14.06 Chip1 T1D_1 T1D _ 6746 2716 M1 FLU 0.69 1250 M1 87 2629 7 InfluenzaA M1 GILGFVFTL transitional T cells between effector and memory populations PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*02:01 B2M MHCI -4174 chip0420_523587 7.91 14.02 Chip1 T1D_1 T1D TGTGCCAGTAGTGTCAGGGCAGGAGAGACCCAGTACTTC CASSVRAGETQYF TRBV19*01 TRBJ2-5*01 11.0 952.0 _CASSVRAGETQYF 23 2724 M1 FLU 0.67 1250 NEG 98 2626 7 InfluenzaA M1 GILGFVFTL transitional T cells between effector and memory populations PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*02:01 B2M MHCI -4175 chip0420_484960 8.75 13.85 Chip1 T1D_1 T1D TGTGCCAGTAGTATAAGGAGCTCCTACGAGCAGTACTTC CASSIRSSYEQYF TRBV19*01 TRBJ2-7*01 4.0 212.0 _CASSIRSSYEQYF 36 2668 M1 FLU 0.55 1250 NEG 102 2566 11 InfluenzaA M1 GILGFVFTL effector T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*02:01 B2M MHCI -4176 chip0420_235460 10.44 11.26 Chip1 T1D_2 T1D TGTGCCAGCAGCTCGGGACTAGTCGCCCCCGGGGAGCTGTTTTTT CASSSGLVAPGELFF TRBV2*01 TRBJ2-2*01 61.0 3849.0 _CASSSGLVAPGELFF 133 3677 EBV-BLMF1 EBV 0.75 2531 NEG 105 3572 9 EBV BLMF1 GLCTLVAML effector memory T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*02:01 B2M MHCI -4177 chip0420_402174 6.33 12.09 Chip1 T1D_1 T1D _ 6746 4999 M1 FLU 0.75 1250 M1 113 4886 7 InfluenzaA M1 GILGFVFTL transitional T cells between effector and memory populations PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*02:01 B2M MHCI -4178 chip0420_621007 6.03 13.55 Chip1 healthy_1 healthy TGCCTCGTGGGTCCTATACATCTTCAACACCTTTTACTTT CLVGPIca??tcFNTFYF TRAV4*01 TRAJ21*01 10.0 347.0 TGTGCCAGTAGTATCCGGAGCTCCTACGAGCAGTACTTC CASSIRSSYEQYF TRBV19*01 TRBJ2-7*01 1.0 10.0 CLVGPIca??tcFNTFYF_CASSIRSSYEQYF 1 3639 M1 FLU 0.9 1250 M1 103 3536 7 InfluenzaA M1 GILGFVFTL transitional T cells between effector and memory populations PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*02:01 B2M MHCI -4179 chip0420_252281 8.43 11.22 Chip1 T1D_2 T1D TGTGCTGTGGGTGGCCCCTCCCTAACCCTGCCAGACTCATGTTT CAVGGPSc?tNPARLMF TRAV8-6*01 TRAJ31*01 116.0 2779.0 TGTGCCCGTAGGGCCTTGTTGGGATCCAATCAGCCCCAGCATTTT CARRALLGSNQPQHF TRBV19*01 TRBJ1-5*01 29.0 574.0 CAVGGPSc?tNPARLMF_CARRALLGSNQPQHF 1 4635 EBV-BRLF1 EBV 0.88 1264 EBV-BRLF1 124 4511 7 EBV BRLF1 YVLDHLIVV transitional T cells between effector and memory populations PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*02:01 B2M MHCI -4180 chip0420_566314 -1.92 9.87 Chip1 T1D_1 T1D TGTGTGGTACTTATATCTAACTTTGGAAATGAGAAATTAACCTTT CVVLISNFGNEKLTF TRAV12-1*01 TRAJ48*01 2.0 136.0 TGCAGCGTCAGAGACGGAGGAAACTATGGCTACACCTTC CSVRDGGNYGYTF TRBV29-1*01 TRBJ1-2*01 3.0 123.0 CVVLISNFGNEKLTF_CSVRDGGNYGYTF 1 4549 PGT-178 PGT 0.69 1480 PGT-178 96 4453 3 HomoSapiens PGT LLAGIGTVPI Naive T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*02:01 B2M MHCI -4181 chip0420_325592 -4.38 8.0 Chip1 T1D_1 T1D TGTGCCTGGAGCCCGGAGTCTAGCGTGAGCGATGAGCAGTTCTTC CAWSPESSVSDEQFF TRBV30*01 TRBJ2-1*01 8.0 369.0 _CAWSPESSVSDEQFF 1 4164 GP160-311-320 HIV 0.85 109 NEG 87 4077 2 HIV-1 GP160 RGPGRAFVTI Naive T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*02:01 B2M MHCI -4182 chip0420_71047 7.09 13.53 Chip1 healthy_1 healthy _ 6746 3324 M1 FLU 0.68 1250 M1 92 3232 7 InfluenzaA M1 GILGFVFTL transitional T cells between effector and memory populations PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*02:01 B2M MHCI -4183 chip0420_841758 -2.58 14.0 Chip1 healthy_1 healthy TGTGCCAGCAGTAACCGGGACCCCGGGGGAAGGGGTGATACGCAGTATTTT CASSNRDPGGRGDTQYF TRBV28*01 TRBJ2-3*01 18.0 827.0 _CASSNRDPGGRGDTQYF 1 2713 PGT-178 PGT 0.57 1480 PGT-178 93 2620 1 HomoSapiens PGT LLAGIGTVPI Naive T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*02:01 B2M MHCI -4184 chip0420_569554 -0.15 6.3 Chip1 T1D_1 T1D _ 6746 3470 CVB3-P3A CVB 0.8 77 CVB3-P3A 94 3376 3 CoxsackievirusB P3A GIIYIIYKL Naive T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*02:01 B2M MHCI -4185 chip0420_628019 -2.97 11.52 Chip1 healthy_1 healthy _ 6746 4012 PGT-178 PGT 0.61 1480 PGT-178 86 3926 1 HomoSapiens PGT LLAGIGTVPI Naive T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*02:01 B2M MHCI -4186 chip0420_458556 -0.51 4.53 Chip1 T1D_1 T1D TGTGCCAGCAGTCACCTCAGGACAGGGGTTGCCGAGCAGTACTTC CASSHLRTGVAEQYF TRBV12-3*01,TRBV12-4*01 TRBJ2-7*01 26.0 1611.0 _CASSHLRTGVAEQYF 1 3361 PGT-178 PGT 0.85 1480 PGT-178 83 3278 5 HomoSapiens PGT LLAGIGTVPI natural killer-like T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*02:01 B2M MHCI -4187 chip0420_173603 14.69 8.85 Chip1 T1D_1 T1D _ 6746 2808 EBV-BLMF1 EBV 0.44 2531 NEG 99 2709 12 EBV BLMF1 GLCTLVAML effector T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*02:01 B2M MHCI -4188 chip0420_123725 11.15 10.39 Chip1 T1D_1 T1D TGTGCCAGCAGTGAGGCATTTCTAGCGGACAATGAGCAGTTCTTC CASSEAFLADNEQFF TRBV6-4*01 TRBJ2-1*01 22.0 794.0 _CASSEAFLADNEQFF 6 2859 EBV-BRLF1 EBV 0.5 1264 NEG 108 2751 9 EBV BRLF1 YVLDHLIVV effector memory T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*02:01 B2M MHCI -4189 chip0420_744832 13.38 11.34 Chip1 T1D_1 T1D _ 6746 2726 EBV-BLMF1 EBV 0.89 2531 EBV-BLMF1 91 2635 9 EBV BLMF1 GLCTLVAML effector memory T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*02:01 B2M MHCI -4190 chip0420_202451 14.92 12.76 Chip1 T1D_1 T1D _ 6746 1806 EBV-BLMF1 EBV 0.5 2531 NEG 89 1717 12 EBV BLMF1 GLCTLVAML effector T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*02:01 B2M MHCI -4191 chip0420_80164 12.67 13.4 Chip1 T1D_1 T1D _ 6746 1800 EBV-BLMF1 EBV 1.0 2531 NEG 82 1718 11 EBV BLMF1 GLCTLVAML effector T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*02:01 B2M MHCI -4192 chip0420_46945 9.9 10.26 Chip1 T1D_3 T1D _ 6746 3556 BZLF1-190-197 EBV 0.69 2156 NEG 95 3461 9 EBV BZLF1 RAKFKQLL effector memory T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-B*08:01 B2M MHCI -4193 chip0420_389691 6.16 13.7 Chip1 healthy_1 healthy TGTGCTGTCGTAAGAAACCAGTGGCTCTAGGTTGACCTTT CAVVRNca??gtGSRLTF TRAV41*01 TRAJ10*01 40.0 2284.0 CAVVRNca??gtGSRLTF_ 1 4970 M1 FLU 0.91 1250 M1 91 4879 7 InfluenzaA M1 GILGFVFTL transitional T cells between effector and memory populations PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*02:01 B2M MHCI -4194 chip0420_857480 0.4 8.97 Chip1 healthy_2 healthy _ 6746 3143 G6PC2-PTH-9 IGRP 0.41 7 NEG 93 3050 4 HomoSapiens G6PC2 PTHEEHLFY Naive T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*01:01 B2M MHCI -4195 chip0420_801777 -3.88 8.83 Chip1 healthy_1 healthy TGTGCCATCGACTCAGGAGAAAGGGTCGAAGAGACCCAGTACTTC CAIDSGERVEETQYF TRBV28*01 TRBJ2-5*01 3.0 100.0 _CAIDSGERVEETQYF 1 4985 PGT-178 PGT 0.76 1480 PGT-178 86 4899 2 HomoSapiens PGT LLAGIGTVPI Naive T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*02:01 B2M MHCI -4196 chip0420_754520 10.21 7.98 Chip1 T1D_1 T1D TGCAGTGCTAGAGACGGGACAGGGAATGGCTACACCTTC CSARDGTGNGYTF TRBV20-1*01 TRBJ1-2*01 26.0 1814.0 _CSARDGTGNGYTF 14 4315 EBV-BLMF1 EBV 0.82 2531 EBV-BLMF1 114 4201 10 EBV BLMF1 GLCTLVAML effector memory T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*02:01 B2M MHCI -4197 chip0420_659574 8.97 12.16 Chip1 T1D_2 T1D TGTGCAGCATACGCAGGCAACTTGCTCCCCTTT CAAYAGNLLPF TRAV29/DV5*01 TRAJ39*01 24.0 2121.0 CAAYAGNLLPF_ 1 2698 EBV-BLMF1 EBV 1.0 2531 NEG 101 2597 7 EBV BLMF1 GLCTLVAML transitional T cells between effector and memory populations PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*02:01 B2M MHCI -4198 chip0420_293860 11.7 8.91 Chip1 T1D_2 T1D TGTGCAGCGTATGCAGGCAACATGCTCACCTTT CAAYAGNMLTF TRAV29/DV5*01 TRAJ39*01 25.0 2151.0 TGCGCCAGCAGAGCGGGAGCCGGGGATACGCAGTATTTT CASRAGAGDTQYF TRBV10-2*01 TRBJ2-3*01 13.0 675.0 CAAYAGNMLTF_CASRAGAGDTQYF 18 3671 EBV-BLMF1 EBV 0.85 2531 NEG 114 3557 10 EBV BLMF1 GLCTLVAML effector memory T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*02:01 B2M MHCI -4199 chip0420_432528 6.0 13.9 Chip1 healthy_1 healthy TGTGCTTATAAGGGCGGTGGTGCTACAAACAAGCTCATCTTT CAYKGGGATNKLIF TRAV38-1*01 TRAJ32*01 33.0 1987.0 TGTGCTGGAGCTGCCGGGAGGCGGTGCTGACGGACTCACCTTT CAGAAGR??cGADGLTF TRAV27*01 TRAJ45*01 68.0 2124.0 0.58 CAYKGGGATNKLIF_ 1 4139 M1 FLU 0.82 1250 M1 89 4050 7 InfluenzaA M1 GILGFVFTL transitional T cells between effector and memory populations PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*02:01 B2M MHCI -4200 chip0420_183610 -0.75 7.68 Chip1 T1D_1 T1D TGTGCCAGCAGCCAAGAGAGGGGCAGAGCTAACTATGGCTACACCTTC CASSQERGRANYGYTF TRBV14*01 TRBJ1-2*01 5.0 130.0 _CASSQERGRANYGYTF 1 7331 PGT-178 PGT 0.93 1480 PGT-178 86 7245 3 HomoSapiens PGT LLAGIGTVPI Naive T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*02:01 B2M MHCI -4201 chip0420_90961 -2.46 14.93 Chip1 T1D_1 T1D _ 6746 2535 PGT-178 PGT 0.59 1480 PGT-178 88 2447 1 HomoSapiens PGT LLAGIGTVPI Naive T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*02:01 B2M MHCI -4202 chip0420_104294 12.23 10.35 Chip1 T1D_2 T1D TGCAGCGTGGGGACAGGGGGAACTAATGAAAAACTGTTTTTT CSVGTGGTNEKLFF TRBV29-1*01 TRBJ1-4*01 56.0 2218.0 _CSVGTGGTNEKLFF 638 3702 EBV-BLMF1 EBV 0.6 2531 NEG 110 3592 9 EBV BLMF1 GLCTLVAML effector memory T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*02:01 B2M MHCI -4203 chip0420_333816 -0.17 4.07 Chip1 T1D_1 T1D TGTGCCCGCCGTGTGGCGGGGGCCTACAATGAGCAGTTCCTC CARRVAGAYNEQFL TRBV6-2*01,TRBV6-3*01 TRBJ2-1*01 3.0 201.0 _CARRVAGAYNEQFL 1 5857 HCV-K1Y HCV 0.5 15 NEG 97 5760 5 HCV POL YLVALGINAV natural killer-like T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*02:01 B2M MHCI -4204 chip0420_642989 -4.03 12.66 Chip1 T1D_1 T1D TGTGTGGTGAGCCGTCAGGGGGGAACTGGAGGCTTCAAAACTATCTTT CVVSRQGGTGGFKTIF TRAV12-1*01 TRAJ9*01 95.0 4091.0 TGTGCCAGCAGTTTTCTCGGGCCAGGTCTCAACGAGCAGTACTTC CASSFLGPGLNEQYF TRBV28*01 TRBJ2-7*01 1.0 66.0 CVVSRQGGTGGFKTIF_CASSFLGPGLNEQYF 1 4255 EBV-LMP2A EBV 0.67 700 NEG 94 4161 1 EBV LMP2A CLGGLLTMV Naive T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*02:01 B2M MHCI -4205 chip0420_299221 13.2 9.8 Chip1 T1D_1 T1D _ 6746 2584 EBV-BRLF1 EBV 0.89 1264 EBV-BRLF1 100 2484 10 EBV BRLF1 YVLDHLIVV effector memory T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*02:01 B2M MHCI -4206 chip0420_135513 -4.24 11.16 Chip1 T1D_1 T1D TGTGCCGTGAACGACGGTGACATGCGCTTT CAVNDGDMRF TRAV12-2*01 TRAJ43*01 2.0 34.0 CAVNDGDMRF_ 1 3960 PTPRN-830-839 PTPRN 0.97 2 PTPRN-830-839 89 3871 1 HomoSapiens PTPRN SLYHVYEVNL Naive T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*02:01 B2M MHCI -4207 chip0420_754205 7.85 9.8 Chip1 T1D_2 T1D _ 6746 5724 EBV-BRLF1 EBV 0.89 1264 EBV-BRLF1 110 5614 8 EBV BRLF1 YVLDHLIVV effector memory T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*02:01 B2M MHCI -4208 chip0420_714920 -4.42 9.24 Chip1 healthy_2 healthy _ 6746 4089 gp160-2-10 HIV 0.91 6 gp160-2-10 86 4003 2 HIV-1 gp160 RVKEKYQHL Naive T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-B*08:01 B2M MHCI -4209 chip0420_631923 7.38 13.92 Chip1 T1D_1 T1D _ 6746 2148 M1 FLU 0.87 1250 NEG 114 2034 7 InfluenzaA M1 GILGFVFTL transitional T cells between effector and memory populations PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*02:01 B2M MHCI -4210 chip0420_265046 11.83 8.5 Chip1 T1D_1 T1D TGTGCCCGCCGCCCAAGCCCGGGTGGTACGCAGTATTTT CARRPSPGGTQYF TRBV14*01 TRBJ2-3*01 5.0 207.0 _CARRPSPGGTQYF 1 3679 EBV-BLMF1 EBV 0.6 2531 NEG 106 3573 10 EBV BLMF1 GLCTLVAML effector memory T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*02:01 B2M MHCI -4211 chip0420_649721 6.89 10.95 Chip1 healthy_1 healthy TGTGCCAGTAGTATTTCGGGGGCCAATCAGCCCCAGCATTTT CASSISGANQPQHF TRBV19*01 TRBJ1-5*01 23.0 1081.0 _CASSISGANQPQHF 1 3970 M1 FLU 0.78 1250 NEG 82 3888 7 InfluenzaA M1 GILGFVFTL transitional T cells between effector and memory populations PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*02:01 B2M MHCI -4212 chip0420_225874 11.22 12.38 Chip1 T1D_1 T1D TGTGCCATCAGTGAGGGGACGCTGAGCTCCTACAATGAGCAGCTCTTC CAISEGTLSSYNEQLF TRBV10-3*01 TRBJ2-1*01 9.0 452.0 _CAISEGTLSSYNEQLF 1 1868 EBV-BRLF1 EBV 0.83 1264 NEG 95 1773 11 EBV BRLF1 YVLDHLIVV effector T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*02:01 B2M MHCI -4213 chip0420_536926 9.11 10.92 Chip1 T1D_2 T1D _ 6746 4212 EBV-BRLF1 EBV 0.97 1264 EBV-BRLF1 99 4113 9 EBV BRLF1 YVLDHLIVV effector memory T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*02:01 B2M MHCI -4214 chip0420_739727 6.33 12.12 Chip1 healthy_1 healthy TGTGCCAGTAGTACGCGGAGCTCCTACGAGCAGTACTTC CASSTRSSYEQYF TRBV19*01 TRBJ2-7*01 19.0 1070.0 _CASSTRSSYEQYF 7 4242 M1 FLU 0.86 1250 M1 92 4150 7 InfluenzaA M1 GILGFVFTL transitional T cells between effector and memory populations PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*02:01 B2M MHCI -4215 chip0420_638525 7.03 10.37 Chip1 healthy_1 healthy _ 6746 5704 GAG-77-86 HIV 0.46 15 NEG 98 5606 7 HIV-1 GAG SLYNTVATLY transitional T cells between effector and memory populations PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*02:01 B2M MHCI -4216 chip0420_315795 14.26 11.89 Chip1 T1D_1 T1D TGTGCCAGCAGCACGGGACAGCTATCGAACACCGGGGAGCCGTTTTTT CASSTGQLSNTGEPFF TRBV9*01 TRBJ2-2*01 24.0 1176.0 _CASSTGQLSNTGEPFF 1 1841 EBV-BLMF1 EBV 0.86 2531 NEG 84 1757 12 EBV BLMF1 GLCTLVAML effector T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*02:01 B2M MHCI -4217 chip0420_525842 12.94 8.33 Chip1 T1D_2 T1D TGTGCCAGTAGGGCCCTCTTGGGAAGCAATCAGCCCCAGCATTTT CASRALLGSNQPQHF TRBV19*01 TRBJ1-5*01 1.0 18.0 _CASRALLGSNQPQHF 8 2386 EBV-BRLF1 EBV 0.89 1264 EBV-BRLF1 91 2295 10 EBV BRLF1 YVLDHLIVV effector memory T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*02:01 B2M MHCI -4218 chip0420_461755 5.9 13.45 Chip1 healthy_1 healthy AGTGCTAATAAGGGCGGTGGCGCTGCGTGCCCGCTCGTCTTT SANKGGGAACPLVF TRAV38-1*01 TRAJ32*01 9.0 286.0 TGCAGCGTGGGGACAGGGGGAACTTAATGAAAAACTGTTCTTT CSVGTGG??aLNEKLFF TRBV29-1*01 TRBJ1-4*01 4.0 106.0 SANKGGGAACPLVF_CSVGTGG??aLNEKLFF 1 4786 M1 FLU 0.81 1250 M1 94 4692 7 InfluenzaA M1 GILGFVFTL transitional T cells between effector and memory populations PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*02:01 B2M MHCI -4219 chip0420_257928 14.66 9.86 Chip1 T1D_1 T1D TGTGCCAGCAGCCCAGTTAGCGGGTCAACCTACGAGCAGTACTTC CASSPVSGSTYEQYF TRBV3-1*01 TRBJ2-7*01 27.0 1224.0 _CASSPVSGSTYEQYF 80 3145 EBV-BLMF1 EBV 0.88 2531 EBV-BLMF1 100 3045 12 EBV BLMF1 GLCTLVAML effector T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*02:01 B2M MHCI -4220 chip0420_516916 9.74 7.92 Chip1 T1D_1 T1D _ 6746 3728 EBV-BLMF1 EBV 0.5 2531 NEG 104 3624 8 EBV BLMF1 GLCTLVAML effector memory T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*02:01 B2M MHCI -4221 chip0420_828725 14.92 10.32 Chip1 T1D_1 T1D TGTGCTGTGAGTGATACCGGCCCGAACCTACAAATACATCTTT CAVSDTG??cRTYKYIF TRAV8-6*01 TRAJ40*01 2.0 437.0 CAVSDTG??cRTYKYIF_ 3 2416 EBV-BRLF1 EBV 0.95 1264 EBV-BRLF1 100 2316 12 EBV BRLF1 YVLDHLIVV effector T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*02:01 B2M MHCI -4222 chip0420_652320 13.67 10.29 Chip1 T1D_1 T1D _ 6746 3441 EBV-BLMF1 EBV 0.82 2531 NEG 104 3337 12 EBV BLMF1 GLCTLVAML effector T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*02:01 B2M MHCI -4223 chip0420_520487 10.69 11.79 Chip1 T1D_1 T1D TGTGCCAGCAGTTCCGGAGGGAACGTGGATACGCAGTATTTT CASSSGGNVDTQYF TRBV7-3*01 TRBJ2-3*01 25.0 1225.0 _CASSSGGNVDTQYF 47 2351 EBV-BLMF1 EBV 0.6 2531 NEG 93 2258 9 EBV BLMF1 GLCTLVAML effector memory T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*02:01 B2M MHCI -4224 chip0420_673423 6.79 11.01 Chip1 T1D_1 T1D TGTGCCAGTAGTATGCGGTCCGCCTACGAGCAGTACTTC CASSMRSAYEQYF TRBV19*01 TRBJ2-7*01 26.0 1800.0 _CASSMRSAYEQYF 6 4724 M1 FLU 0.83 1250 M1 113 4611 7 InfluenzaA M1 GILGFVFTL transitional T cells between effector and memory populations PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*02:01 B2M MHCI -4225 chip0420_754719 6.02 12.65 Chip1 T1D_1 T1D TGTGCAATGAGAGAGGGAGTCGTGGAATATGGAAACAAACTGGTCTTT CAMREGVVEYGNKLVF TRAV14/DV4*01 TRAJ47*01 45.0 2177.0 TGTGCCAGTAGTTTTGGAGCCGGGGAGCTGTTTTTT CASSFGAGELFF TRBV19*01 TRBJ2-2*01 2.0 32.0 CAMREGVVEYGNKLVF_CASSFGAGELFF 3 5561 M1 FLU 0.64 1250 M1 93 5468 7 InfluenzaA M1 GILGFVFTL transitional T cells between effector and memory populations PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*02:01 B2M MHCI -4226 chip0420_493558 11.48 12.23 Chip1 T1D_1 T1D TGCATCCTGTGGCGCTATGGTGGTGGCCAAGGAAATCTCATCTTT CILWRYGGGQGNLIF TRAV26-2*01 TRAJ42*01 59.0 1920.0 CILWRYGGGQGNLIF_ 1 2621 EBV-BLMF1 EBV 1.0 2531 NEG 108 2513 11 EBV BLMF1 GLCTLVAML effector T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*02:01 B2M MHCI -4227 chip0420_60804 11.77 7.07 Chip1 T1D_2 T1D _ 6746 5826 EBV-BRLF1 EBV 0.93 1264 NEG 107 5719 10 EBV BRLF1 YVLDHLIVV effector memory T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*02:01 B2M MHCI -4228 chip0420_745464 -0.06 3.96 Chip1 healthy_1 healthy _ 6746 5103 HCV-L2I HCV 0.5 9 NEG 81 5022 5 HCV POL KIVALGINAV natural killer-like T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*02:01 B2M MHCI -4229 chip0420_457851 -4.17 10.12 Chip1 T1D_1 T1D TGTGCCAGCAGCGTAGGGTACACCGGGGAGCTGTTTTTT CASSVGYTGELFF TRBV9*01 TRBJ2-2*01 54.0 2022.0 _CASSVGYTGELFF 1 5707 PGT-178 PGT 0.7 1480 PGT-178 92 5615 2 HomoSapiens PGT LLAGIGTVPI Naive T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*02:01 B2M MHCI -4230 chip0420_369910 7.23 12.76 Chip1 T1D_1 T1D TGTGCCAGTAGTATAAATGGGGGCCGGAGGGATGGCTACACCTTC CASSINGGRRDGYTF TRBV19*01 TRBJ1-2*01 33.0 1012.0 _CASSINGGRRDGYTF 32 3647 M1 FLU 0.76 1250 M1 92 3555 7 InfluenzaA M1 GILGFVFTL transitional T cells between effector and memory populations PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*02:01 B2M MHCI -4231 chip0420_232937 12.88 6.32 Chip1 T1D_1 T1D TGCGGCCCAGAGGAACCTAACGACTACAAGCTCAGCTTT CGPEEPNDYKLSF TRAV30*01 TRAJ20*01 2.0 153.0 TGTGCCAGCAGCACGGGACAGCTATCGAACACCGGGGAGCTGTTTTTT CASSTGQLSNTGELFF TRBV9*01 TRBJ2-2*01 34.0 1816.0 CGPEEPNDYKLSF_CASSTGQLSNTGELFF 14 3824 EBV-BLMF1 EBV 0.43 2531 NEG 94 3730 10 EBV BLMF1 GLCTLVAML effector memory T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*02:01 B2M MHCI -4232 chip0420_227558 6.52 13.52 Chip1 T1D_1 T1D _ 6746 3819 M1 FLU 0.79 1250 M1 111 3708 7 InfluenzaA M1 GILGFVFTL transitional T cells between effector and memory populations PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*02:01 B2M MHCI -4233 chip0420_149629 10.85 9.75 Chip1 healthy_1 healthy _ 6746 3255 EBV-LMP2-FLY EBV 0.89 355 EBV-LMP2-FLY 99 3156 9 EBV LMP2 FLYALALLL effector memory T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*02:01 B2M MHCI -4234 chip0420_564220 5.33 8.98 Chip1 T1D_2 T1D TGTGCCAGCAGCCGACAAGGAGGGAAGGATGGCTACACCTTC CASSRQGGKDGYTF TRBV6-1*01 TRBJ1-2*01 26.0 1237.0 _CASSRQGGKDGYTF 5 2981 EBV-LMP2-FLY EBV 0.83 355 NEG 112 2869 6 EBV LMP2 FLYALALLL central memory T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*02:01 B2M MHCI -4235 chip0420_257691 8.72 14.04 Chip1 T1D_1 T1D _ 6746 2126 M1 FLU 1.0 1250 M1 101 2025 11 InfluenzaA M1 GILGFVFTL effector T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*02:01 B2M MHCI -4236 chip0420_400701 8.51 13.91 Chip1 T1D_1 T1D TGTGCCACCAGTGCTGTCGGGGTACCTACTGAAGCTTTCTTT CATSAVGVPTEAFF TRBV24-1*01 TRBJ1-1*01 7.0 443.0 _CATSAVGVPTEAFF 2 2339 M1 FLU 0.88 1250 M1 115 2224 11 InfluenzaA M1 GILGFVFTL effector T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*02:01 B2M MHCI -4237 chip0420_107814 6.89 13.32 Chip1 T1D_1 T1D TGTGCCAGTAGTATAAATGGGGGCCGGAGGGATGGCTACACCTTC CASSINGGRRDGYTF TRBV19*01 TRBJ1-2*01 25.0 1009.0 _CASSINGGRRDGYTF 32 4098 M1 FLU 0.7 1250 NEG 86 4012 7 InfluenzaA M1 GILGFVFTL transitional T cells between effector and memory populations PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*02:01 B2M MHCI -4238 chip0420_719102 7.06 12.63 Chip1 T1D_1 T1D _ 6746 3280 M1 FLU 0.88 1250 M1 98 3182 7 InfluenzaA M1 GILGFVFTL transitional T cells between effector and memory populations PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*02:01 B2M MHCI -4239 chip0420_418411 -3.91 9.56 Chip1 T1D_1 T1D TGTGCCCGGGGAGACAGCTGGGAGAAATTGCAGTTT CARGDSWEKLQF TRAV12-2*01 TRAJ24*01 16.0 2048.0 CARGDSWEKLQF_ 1 4842 GAD65-141-149 GAD65 0.83 9 GAD65-141-149 103 4739 2 HomoSapiens GAD65 LLQEYNWEL Naive T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*02:01 B2M MHCI -4240 chip0420_226342 11.2 8.59 Chip1 T1D_3 T1D TGTGCCGGTCGTCCCTACGACAGGTGGGACTGCAGCTGTCTTT CAGRPYD??aGGTAAVF TRBV19*01 TRBJ1-1*01 15.0 1875.0 _CAGRPYD??aGGTAAVF 1 4013 EBNA3A-158-166 EBV 0.75 444 NEG 94 3919 10 EBV EBNA3A QAKWRLQTL effector memory T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-B*08:01 B2M MHCI -4241 chip0420_867239 9.7 7.37 Chip1 T1D_1 T1D TGTGCCAGCAGCACGGGACAGCTATCGAACACCGGGGAGCTGTTTTTT CASSTGQLSNTGELFF TRBV9*01 TRBJ2-2*01 7.0 495.0 _CASSTGQLSNTGELFF 82 4545 EBV-BLMF1 EBV 0.64 2531 EBV-BLMF1 86 4459 10 EBV BLMF1 GLCTLVAML effector memory T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*02:01 B2M MHCI -4242 chip0420_699170 15.04 12.59 Chip1 T1D_1 T1D _ 6746 1755 EBV-BLMF1 EBV 0.6 2531 NEG 84 1671 12 EBV BLMF1 GLCTLVAML effector T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*02:01 B2M MHCI -4243 chip0420_187209 -2.97 9.38 Chip1 T1D_1 T1D TGTGCAATGAGTTTATCTAACTTTGGAAATGAGAAATTAACCTTT CAMSLSNFGNEKLTF TRAV12-3*01 TRAJ48*01 58.0 2234.0 CAMSLSNFGNEKLTF_ 16 5393 PGT-178 PGT 0.57 1480 PGT-178 110 5283 2 HomoSapiens PGT LLAGIGTVPI Naive T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*02:01 B2M MHCI -4244 chip0420_356016 -2.63 10.09 Chip1 healthy_1 healthy _ 6746 4250 PGT-178 PGT 0.63 1480 NEG 92 4158 3 HomoSapiens PGT LLAGIGTVPI Naive T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*02:01 B2M MHCI -4245 chip0420_251343 8.38 13.71 Chip1 T1D_1 T1D TGTGCAGGGAATTATGGAGGAAGCCAAGGAAATCTCCTCTTT CAGNYGGSQGNLLF TRAV25*01 TRAJ42*01 50.0 2127.0 TGTGCCCGTCGTACCCGTCGCCCCGATGCGCAGTATTTT CARRTRRPDAQYF TRBV19*01 TRBJ2-3*01 3.0 84.0 CAGNYGGSQGNLLF_CARRTRRPDAQYF 1 2682 M1 FLU 0.8 1250 NEG 97 2585 7 InfluenzaA M1 GILGFVFTL transitional T cells between effector and memory populations PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*02:01 B2M MHCI -4246 chip0420_697769 6.64 12.71 Chip1 healthy_1 healthy _ 6746 4093 M1 FLU 0.82 1250 NEG 91 4002 7 InfluenzaA M1 GILGFVFTL transitional T cells between effector and memory populations PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*02:01 B2M MHCI -4247 chip0420_220868 8.61 8.79 Chip1 T1D_1 T1D TGTGCTTATGTGTCAGGAACCTCCCAAATTCGTCTT CAYVSGTSQIRL TRAV38-1*01 TRAJ40*01 8.0 739.0 TGTGCCAGCAGCCTTCTGACTTCTGGGGCCAACGTCCTGACTTTC CASSLLTSGANVLTF TRBV11-2*01 TRBJ2-6*01 17.0 940.0 CAYVSGTSQIRL_CASSLLTSGANVLTF 1 6380 EBV-BLMF1 EBV 0.63 2531 EBV-BLMF1 119 6261 8 EBV BLMF1 GLCTLVAML effector memory T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*02:01 B2M MHCI -4248 chip0420_551467 15.23 8.9 Chip1 T1D_1 T1D TGTGCCAGCAGTCCGGACCAAACTAGCTCCTACAATGAGCAGTTCTTC CASSPDQTSSYNEQFF TRBV27*01 TRBJ2-1*01 5.0 305.0 _CASSPDQTSSYNEQFF 47 1999 EBV-BRLF1 EBV 0.88 1264 EBV-BRLF1 124 1875 12 EBV BRLF1 YVLDHLIVV effector T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*02:01 B2M MHCI -4249 chip0420_330180 -1.23 9.08 Chip1 T1D_1 T1D _ 6746 6785 PGT-178 PGT 0.93 1480 PGT-178 104 6681 3 HomoSapiens PGT LLAGIGTVPI Naive T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*02:01 B2M MHCI -4250 chip0420_748112 -1.85 7.97 Chip1 healthy_2 healthy _ 6746 4944 PGT-178 PGT 0.71 1480 PGT-178 89 4855 4 HomoSapiens PGT LLAGIGTVPI Naive T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*02:01 B2M MHCI -4251 chip0420_71752 5.52 8.57 Chip1 T1D_1 T1D _ 6746 6271 EBV-LMP2-FLY EBV 0.65 355 NEG 114 6157 6 EBV LMP2 FLYALALLL central memory T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*02:01 B2M MHCI -4252 chip0420_656120 9.09 13.82 Chip1 healthy_1 healthy TGTGCTCCCGGTTCCCTGGGGCTGGGAGTTACCAACTCACATTC CAPGSLGc?tGSYQLTF TRAV17*01 TRAJ28*01 26.0 1677.0 CAPGSLGc?tGSYQLTF_ 1 2021 M1 FLU 0.79 1250 NEG 96 1925 11 InfluenzaA M1 GILGFVFTL effector T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*02:01 B2M MHCI -4253 chip0420_862379 -4.01 11.01 Chip1 T1D_1 T1D _ 6746 4497 PGT-178 PGT 0.85 1480 PGT-178 104 4393 2 HomoSapiens PGT LLAGIGTVPI Naive T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*02:01 B2M MHCI -4254 chip0420_705628 -2.29 11.95 Chip1 T1D_1 T1D TGTGCCAGCAGCCAAGCACTAGCGGGACGGCAGCAGTTCTTC CASSQALAGRQQFF TRAV9-1*01 TRAJ50*01 3.0 6.0 TGTGCCAGCAGCCAAGCACTAGCGGGACGGCAGCAGTTCTTC CASSQALAGRQQFF TRBV3-1*01 TRBJ2-1*01 42.0 4112.0 CASSQALAGRQQFF_CASSQALAGRQQFF 1 4015 PGT-178 PGT 0.58 1480 PGT-178 91 3924 1 HomoSapiens PGT LLAGIGTVPI Naive T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*02:01 B2M MHCI -4255 chip0420_82363 14.31 9.85 Chip1 T1D_1 T1D TGTGCCAGCAGTGCCGGGACAGTTGCACCCGGGGAGCTGTTTTTT CASSAGTVAPGELFF TRBV2*01 TRBJ2-2*01 24.0 1399.0 _CASSAGTVAPGELFF 21 2169 EBV-BLMF1 EBV 0.5 2531 NEG 87 2082 12 EBV BLMF1 GLCTLVAML effector T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*02:01 B2M MHCI -4256 chip0420_3799 13.98 8.56 Chip1 T1D_1 T1D TGTGCAGAGAGTACAAGTGGGGGAAAGCTTATCTTC CAESTSGGKLIF TRAV5*01 TRAJ23*01 33.0 2258.0 TGTGCTGTGAGTGATTTGGGAATGACATGCGCTTT CAVSDtt?GNDMRF TRAV8-4*01 TRAJ43*01 50.0 3511.0 0.58 TGCAGCGTCGGCTCCAGGGGAACTAATGAAAAACTGTTTTTT CSVGSRGTNEKLFF TRBV29-1*01 TRBJ1-4*01 13.0 692.0 CAESTSGGKLIF_CSVGSRGTNEKLFF 19 2570 EBV-BLMF1 EBV 0.75 2531 NEG 101 2469 10 EBV BLMF1 GLCTLVAML effector memory T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*02:01 B2M MHCI -4257 chip0420_698005 6.8 13.23 Chip1 T1D_1 T1D _ 6746 3117 M1 FLU 0.42 1250 NEG 85 3032 7 InfluenzaA M1 GILGFVFTL transitional T cells between effector and memory populations PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*02:01 B2M MHCI -4258 chip0420_689417 6.08 12.74 Chip1 healthy_1 healthy TGTGCCAGTAGTATAAGAAGTTCCTACGAGCAGTACTTC CASSIRSSYEQYF TRBV19*01 TRBJ2-7*01 14.0 602.0 _CASSIRSSYEQYF 36 4803 M1 FLU 0.89 1250 M1 82 4721 7 InfluenzaA M1 GILGFVFTL transitional T cells between effector and memory populations PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*02:01 B2M MHCI -4259 chip0420_768991 8.74 8.45 Chip1 T1D_3 T1D TGTGCTCTCCTTGGCTCTAGCAACACAGGCAAACTAATCTTT CALLGSSNTGKLIF TRAV19*01 TRAJ37*01 4.0 423.0 TGTGCCAGCAGTCTCCACCTTCGACAGGATGAACAGCCCCAGCATTTT CASSLHLRQDEQPQHF TRBV28*01 TRBJ1-5*01 29.0 1140.0 CALLGSSNTGKLIF_CASSLHLRQDEQPQHF 2 5644 EBNA3A-158-166 EBV 0.41 444 EBNA3A-158-166 115 5529 8 EBV EBNA3A QAKWRLQTL effector memory T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-B*08:01 B2M MHCI -4260 chip0420_30602 8.26 13.78 Chip1 T1D_1 T1D TGTGCCAGTAGTACCGGGCAGCCCCAGCATTTT CASSTGQPQHF TRBV19*01 TRBJ1-5*01 29.0 1847.0 _CASSTGQPQHF 3 2753 M1 FLU 1.0 1250 M1 100 2653 7 InfluenzaA M1 GILGFVFTL transitional T cells between effector and memory populations PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*02:01 B2M MHCI -4261 chip0420_658174 14.52 12.8 Chip1 T1D_1 T1D _ 6746 1958 EBV-BRLF1 EBV 1.0 1264 NEG 100 1858 12 EBV BRLF1 YVLDHLIVV effector T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*02:01 B2M MHCI -4262 chip0420_93009 5.68 11.95 Chip1 T1D_1 T1D _ 6746 5078 M1 FLU 0.78 1250 M1 94 4984 7 InfluenzaA M1 GILGFVFTL transitional T cells between effector and memory populations PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*02:01 B2M MHCI -4263 chip0420_775453 15.27 10.72 Chip1 T1D_1 T1D TGTGCTGACTTAGAATGCTGGCAACAACCGTAAGCTGATTTGG CADLECW??cNNRKLIW TRAV36/DV7*01 TRAJ38*01 43.0 2071.0 TGTGCCCGCAGCCCGGGACAGCTATCGAACACCGGGGAGCTGTTTTTT CARSPGQLSNTGELFF TRBV9*01 TRBJ2-2*01 14.0 620.0 CADLECW??cNNRKLIW_CARSPGQLSNTGELFF 1 2701 EBV-BLMF1 EBV 0.53 2531 EBV-BLMF1 92 2609 12 EBV BLMF1 GLCTLVAML effector T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*02:01 B2M MHCI -4264 chip0420_771302 15.73 10.96 Chip1 T1D_1 T1D TGTGCCACCCAACAGGGGAGGGACAGTCAGCCCCAGCATTTT CATQQGRDSQPQHF TRBV28*01 TRBJ1-5*01 35.0 1707.0 _CATQQGRDSQPQHF 52 2337 EBV-BLMF1 EBV 0.71 2531 NEG 96 2241 12 EBV BLMF1 GLCTLVAML effector T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*02:01 B2M MHCI -4265 chip0420_607646 5.51 9.48 Chip1 T1D_1 T1D _ 6746 5358 EBV-LMP1-1 EBV 0.83 237 EBV-LMP1-1 89 5269 6 EBV LMP1 YLLEMLWRL central memory T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*02:01 B2M MHCI -4266 chip0420_631895 7.22 11.67 Chip1 T1D_1 T1D TGTGCTCCGCAGGGCGATTCAGGATCCACCACCATCACCTTT CAPQGDSGSTTITF TRAV17*01 TRAJ11*01 25.0 1220.0 TGTGCCAGCAGTCCCCAGGGTGGTGGCTATGGCTACACCTTC CASSPQGGGYGYTF TRBV6-1*01 TRBJ1-2*01 3.0 90.0 CAPQGDSGSTTITF_CASSPQGGGYGYTF 1 4431 EBV-LMP2-FLY EBV 0.82 355 NEG 105 4326 7 EBV LMP2 FLYALALLL transitional T cells between effector and memory populations PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*02:01 B2M MHCI -4267 chip0420_852125 7.31 12.1 Chip1 T1D_3 T1D _ 6746 4071 BZLF1-190-197 EBV 0.92 2156 BZLF1-190-197 92 3979 7 EBV BZLF1 RAKFKQLL transitional T cells between effector and memory populations PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-B*08:01 B2M MHCI -4268 chip0420_142262 10.38 13.7 Chip1 T1D_2 T1D TGCGCCAGCAGTCAATCGAGAGGGTCGCTCTGGGATACGCAGTATTTT CASSQSRGSLWDTQYF TRBV4-3*01 TRBJ2-3*01 61.0 2396.0 _CASSQSRGSLWDTQYF 21 1670 EBV-BRLF1 EBV 1.0 1264 EBV-BRLF1 107 1563 11 EBV BRLF1 YVLDHLIVV effector T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*02:01 B2M MHCI -4269 chip0420_265820 10.09 10.14 Chip1 T1D_1 T1D _ 6746 4159 EBV-BLMF1 EBV 0.42 2531 NEG 94 4065 9 EBV BLMF1 GLCTLVAML effector memory T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*02:01 B2M MHCI -4270 chip0420_282267 13.86 8.72 Chip1 T1D_1 T1D TGTGCCAGCAGCACGGGACAGCTATCGAACACCGGGGAGCTGTTTTTT CASSTGQLSNTGELFF TRBV9*01 TRBJ2-2*01 21.0 1202.0 _CASSTGQLSNTGELFF 82 2782 EBV-BLMF1 EBV 0.44 2531 NEG 100 2682 12 EBV BLMF1 GLCTLVAML effector T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*02:01 B2M MHCI -4271 chip0420_668103 6.76 13.65 Chip1 T1D_1 T1D TGTGCCAGTAGTAGTAGGAGCACAGATACGCAGTATTTT CASSSRSTDTQYF TRBV19*01 TRBJ2-3*01 34.0 2184.0 _CASSSRSTDTQYF 6 3141 M1 FLU 0.81 1250 M1 116 3025 7 InfluenzaA M1 GILGFVFTL transitional T cells between effector and memory populations PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*02:01 B2M MHCI -4272 chip0420_605044 10.57 9.94 Chip1 T1D_1 T1D _ 6746 5096 EBV-BRLF1 EBV 0.97 1264 EBV-BRLF1 105 4991 9 EBV BRLF1 YVLDHLIVV effector memory T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*02:01 B2M MHCI -4273 chip0420_459409 10.93 12.16 Chip1 T1D_2 T1D TGCAGCGTGGGGACAGGGGGAACTAATGAAAAACTGTTTTTT CSVGTGGTNEKLFF TRBV29-1*01 TRBJ1-4*01 183.0 9241.0 _CSVGTGGTNEKLFF 638 2405 EBV-BLMF1 EBV 0.6 2531 NEG 117 2288 9 EBV BLMF1 GLCTLVAML effector memory T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*02:01 B2M MHCI -4274 chip0420_539944 6.82 12.19 Chip1 T1D_1 T1D _ 6746 5061 M1 FLU 0.93 1250 M1 100 4961 7 InfluenzaA M1 GILGFVFTL transitional T cells between effector and memory populations PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*02:01 B2M MHCI -4275 chip0420_391006 4.85 9.97 Chip1 T1D_1 T1D _ 6746 2412 EBV-LMP1-1 EBV 0.95 237 EBV-LMP1-1 98 2314 6 EBV LMP1 YLLEMLWRL central memory T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*02:01 B2M MHCI -4276 chip0420_291429 14.89 10.21 Chip1 T1D_1 T1D TGCATCCTGAGACGCTATGGAGGAAGCCAAGGAAATCTCATCTTT CILRRYGGSQGNLIF TRAV26-2*01 TRAJ42*01 47.0 2008.0 TGTGCCAGCAGCCCAGTTAGCGGGTCAACCTACGAGCAGTACTTC CASSPVSGSTYEQYF TRBV3-1*01 TRBJ2-7*01 29.0 1895.0 CILRRYGGSQGNLIF_CASSPVSGSTYEQYF 8 2039 EBV-BLMF1 EBV 0.88 2531 NEG 109 1930 12 EBV BLMF1 GLCTLVAML effector T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*02:01 B2M MHCI -4277 chip0420_170099 6.04 12.47 Chip1 healthy_1 healthy _ 6746 5527 M1 FLU 0.74 1250 M1 85 5442 7 InfluenzaA M1 GILGFVFTL transitional T cells between effector and memory populations PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*02:01 B2M MHCI -4278 chip0420_599323 -4.0 8.82 Chip1 healthy_1 healthy TGTGTGTCCTGGTACAGCAGTGCTTCCAAGATAATCTTT CVSWYSSASKIIF TRAV12-1*01 TRAJ3*01 1.0 21.0 TGTGCCAGCTCGGACCCGAACACTGAAGCTTTCTTT CASSDPNTEAFF TRBV28*01 TRBJ1-1*01 7.0 765.0 CVSWYSSASKIIF_CASSDPNTEAFF 1 5361 ROTA-VP3 ROTA 0.57 41 NEG 77 5284 2 RotavirusA VP3 YLLPGWKL Naive T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*02:01 B2M MHCI -4279 chip0420_584506 11.3 11.95 Chip1 T1D_2 T1D TGTGCCAGCTCTTTGCCGGGCCTGAACTATGGCTACACCTTC CASSLPGLNYGYTF TRBV19*01 TRBJ1-2*01 1.0 86.0 _CASSLPGLNYGYTF 1 1759 EBV-BRLF1 EBV 0.97 1264 EBV-BRLF1 99 1660 9 EBV BRLF1 YVLDHLIVV effector memory T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*02:01 B2M MHCI -4280 chip0420_288973 8.35 12.63 Chip1 healthy_1 healthy _ 6746 3091 M1 FLU 0.65 1250 M1 81 3010 7 InfluenzaA M1 GILGFVFTL transitional T cells between effector and memory populations PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*02:01 B2M MHCI -4281 chip0420_834282 12.16 7.57 Chip1 T1D_2 T1D TGTGCCTGGAGTGACCAACTAGGGGCGGCACGGGAGCTGTTTTTT CAWSDQLGAARELFF TRBV30*01 TRBJ2-2*01 1.0 34.0 _CAWSDQLGAARELFF 7 2701 EBV-BRLF1 EBV 0.94 1264 EBV-BRLF1 94 2607 10 EBV BRLF1 YVLDHLIVV effector memory T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*02:01 B2M MHCI -4282 chip0420_596210 -4.65 9.04 Chip1 T1D_1 T1D TGTGCCAGCAGCGCCGACTGGGGAGATACGCAGTATTTT CASSADWGDTQYF TRBV7-9*01 TRBJ2-3*01 6.0 195.0 _CASSADWGDTQYF 1 5511 PTPRN-482-490 PTPRN 0.87 10 PTPRN-482-490 89 5422 2 HomoSapiens PTPRN SLAAGVKLL Naive T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*02:01 B2M MHCI -4283 chip0420_477256 -4.35 9.3 Chip1 healthy_1 healthy _ 6746 5055 PGT-178 PGT 0.62 1480 PGT-178 98 4957 2 HomoSapiens PGT LLAGIGTVPI Naive T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*02:01 B2M MHCI -4284 chip0420_135610 6.45 13.04 Chip1 healthy_1 healthy _ 6746 3916 M1 FLU 0.74 1250 M1 85 3831 7 InfluenzaA M1 GILGFVFTL transitional T cells between effector and memory populations PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*02:01 B2M MHCI -4285 chip0420_532802 6.49 13.66 Chip1 healthy_1 healthy TGTGCCAGTAATATAAGAAGTTCCTACGAGCAGTACTTC CASNIRSSYEQYF TRBV19*01 TRBJ2-7*01 9.0 395.0 _CASNIRSSYEQYF 1 3455 M1 FLU 0.79 1250 M1 91 3364 7 InfluenzaA M1 GILGFVFTL transitional T cells between effector and memory populations PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*02:01 B2M MHCI -4286 chip0420_380658 11.03 10.8 Chip1 T1D_1 T1D TGTGCCAGCAGTGACGGTCGGGTCCACCCGGGGACCCAGTACTTC CASSDGRVHPGTQYF TRBV2*01 TRBJ2-5*01 11.0 780.0 _CASSDGRVHPGTQYF 24 4223 EBV-BLMF1 EBV 0.59 2531 NEG 101 4122 9 EBV BLMF1 GLCTLVAML effector memory T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*02:01 B2M MHCI -4287 chip0420_328902 -0.86 10.33 Chip1 T1D_1 T1D _ 6746 4464 PGT-178 PGT 0.54 1480 PGT-178 101 4363 3 HomoSapiens PGT LLAGIGTVPI Naive T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*02:01 B2M MHCI -4288 chip0420_151086 10.96 13.82 Chip1 T1D_3 T1D _ 6746 1998 BZLF1-190-197 EBV 0.6 2156 NEG 91 1907 11 EBV BZLF1 RAKFKQLL effector T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-B*08:01 B2M MHCI -4289 chip0420_642169 6.8 13.53 Chip1 healthy_1 healthy TGTGCTCTTCTCAGGAGGAAGCTACATACCTACCTTT CALLRR??aSYIPTF TRAV19*01 TRAJ6*01 22.0 2095.0 CALLRR??aSYIPTF_ 1 3107 M1 FLU 0.6 1250 M1 103 3004 7 InfluenzaA M1 GILGFVFTL transitional T cells between effector and memory populations PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*02:01 B2M MHCI -4290 chip0420_515120 16.04 10.89 Chip1 T1D_1 T1D TGCAGCGTCGGCTCCAGGGGAACTAATGAAAAACTGTTTTTT CSVGSRGTNEKLFF TRBV29-1*01 TRBJ1-4*01 117.0 6179.0 _CSVGSRGTNEKLFF 283 2068 EBV-BLMF1 EBV 0.55 2531 NEG 90 1978 12 EBV BLMF1 GLCTLVAML effector T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*02:01 B2M MHCI -4291 chip0420_488772 9.09 9.56 Chip1 T1D_3 T1D _ 6746 3665 BZLF1-190-197 EBV 0.75 2156 NEG 94 3571 8 EBV BZLF1 RAKFKQLL effector memory T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-B*08:01 B2M MHCI -4292 chip0420_103143 6.23 13.28 Chip1 T1D_1 T1D TGTGCAATGAGAGAGGATAATGCAGGCAACATGCTCACCTTT CAMREDNAGNMLTF TRAV14/DV4*01 TRAJ39*01 1.0 42.0 CAMREDNAGNMLTF_ 5 4306 M1 FLU 0.87 1250 M1 99 4207 7 InfluenzaA M1 GILGFVFTL transitional T cells between effector and memory populations PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*02:01 B2M MHCI -4293 chip0420_533816 9.05 9.02 Chip1 T1D_1 T1D TGTGCCACCCAACAGGGGAGGGACAGTCAGCCCCAGCATTTT CATQQGRDSQPQHF TRBV28*01 TRBJ1-5*01 50.0 2330.0 _CATQQGRDSQPQHF 52 5376 EBV-BLMF1 EBV 0.8 2531 NEG 93 5283 8 EBV BLMF1 GLCTLVAML effector memory T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*02:01 B2M MHCI -4294 chip0420_191244 9.82 8.3 Chip1 T1D_1 T1D TGCAGCGTCGGCTCCAGGGGAACTAATGAAAAACTGTTTTTT CSVGSRGTNEKLFF TRBV29-1*01 TRBJ1-4*01 83.0 5414.0 _CSVGSRGTNEKLFF 283 3038 EBV-BLMF1 EBV 0.7 2531 NEG 114 2924 8 EBV BLMF1 GLCTLVAML effector memory T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*02:01 B2M MHCI -4295 chip0420_62698 -3.19 13.83 Chip1 T1D_3 T1D TGTGCAGAGACCTTCTCGGCCCCGCCCCGCTCATCTTT CAETFSg?cPAPLIF TRAV13-2*01 TRAJ34*01 30.0 2182.0 CAETFSg?cPAPLIF_ 1 3340 GAD2-FQQ-9 GAD65 0.45 10 GAD2-FQQ-9 99 3241 1 HomoSapiens GAD2 FQQDKHYDL Naive T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-B*08:01 B2M MHCI -4296 chip0420_575092 10.83 9.08 Chip1 T1D_1 T1D _ 6746 2498 EBV-BRLF1 EBV 0.96 1264 EBV-BRLF1 94 2404 10 EBV BRLF1 YVLDHLIVV effector memory T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*02:01 B2M MHCI -4297 chip0420_337762 6.45 11.59 Chip1 T1D_1 T1D TGTGCCAGTAGTATAACGGCTAGCGGGGGCCATGAGCAGTTCTTC CASSITASGGHEQFF TRBV19*01 TRBJ2-1*01 5.0 272.0 _CASSITASGGHEQFF 2 4947 M1 FLU 1.0 1250 NEG 106 4841 7 InfluenzaA M1 GILGFVFTL transitional T cells between effector and memory populations PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*02:01 B2M MHCI -4298 chip0420_863835 -4.25 9.6 Chip1 T1D_1 T1D _ 6746 4658 PGT-178 PGT 0.5 1480 PGT-178 101 4557 2 HomoSapiens PGT LLAGIGTVPI Naive T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*02:01 B2M MHCI -4299 chip0420_640079 8.23 11.35 Chip1 healthy_1 healthy _ 6746 4938 M1 FLU 1.0 1250 M1 86 4852 7 InfluenzaA M1 GILGFVFTL transitional T cells between effector and memory populations PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*02:01 B2M MHCI -4300 chip0420_827554 6.34 12.17 Chip1 healthy_1 healthy TGTGCCAGTAGTACCCGCAGCACCGGGGAGCTGTTTTTT CASSTRSTGELFF TRBV19*01 TRBJ2-2*01 37.0 2029.0 _CASSTRSTGELFF 1 4393 M1 FLU 0.71 1250 M1 101 4292 7 InfluenzaA M1 GILGFVFTL transitional T cells between effector and memory populations PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*02:01 B2M MHCI -4301 chip0420_265478 4.72 10.37 Chip1 T1D_2 T1D TGTGCCAGCAGTTACCTAGCGGGAGGTAACGCGAACACCGGGGAGCTGTTTTTT CASSYLAGGNANTGELFF TRBV6-2*01,TRBV6-3*01 TRBJ2-2*01 41.0 1387.0 _CASSYLAGGNANTGELFF 1 2040 INS-6-16 INS 0.78 20 NEG 84 1956 6 HomoSapiens INS RLLPLLALLAL central memory T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*02:01 B2M MHCI -4302 chip0420_164863 11.62 13.97 Chip1 T1D_2 T1D _ 6746 1030 EBV-BRLF1 EBV 1.0 1264 NEG 103 927 11 EBV BRLF1 YVLDHLIVV effector T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*02:01 B2M MHCI -4303 chip0420_535673 -2.54 11.92 Chip1 T1D_1 T1D _ 6746 4882 PGT-178 PGT 0.74 1480 PGT-178 94 4788 1 HomoSapiens PGT LLAGIGTVPI Naive T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*02:01 B2M MHCI -4304 chip0420_224601 11.23 10.83 Chip1 T1D_1 T1D _ 6746 3814 EBV-BLMF1 EBV 0.9 2531 NEG 100 3714 9 EBV BLMF1 GLCTLVAML effector memory T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*02:01 B2M MHCI -4305 chip0420_666089 6.95 12.54 Chip1 healthy_1 healthy TGTGCCAGTAGTACCAGATCCTCCTACGAGCAGTACTTC CASSTRSSYEQYF TRBV19*01 TRBJ2-7*01 3.0 70.0 _CASSTRSSYEQYF 7 4141 M1 FLU 0.63 1250 M1 106 4035 7 InfluenzaA M1 GILGFVFTL transitional T cells between effector and memory populations PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*02:01 B2M MHCI -4306 chip0420_489701 -0.08 4.37 Chip1 healthy_1 healthy _ 6746 6166 HCV-K1YI7V HCV 0.4 3 NEG 89 6077 5 HCV POL YLVALGVNAV natural killer-like T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*02:01 B2M MHCI -4307 chip0420_606962 11.39 7.78 Chip1 T1D_2 T1D _ 6746 3887 EBV-BRLF1 EBV 1.0 1264 NEG 107 3780 10 EBV BRLF1 YVLDHLIVV effector memory T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*02:01 B2M MHCI -4308 chip0420_441312 12.33 13.26 Chip1 T1D_2 T1D TGTGCCAGCAGCTCGGGACTAGTCGCCCCCGGGGAGCTGTTTTTT CASSSGLVAPGELFF TRBV2*01 TRBJ2-2*01 83.0 5403.0 _CASSSGLVAPGELFF 133 1563 EBV-BLMF1 EBV 1.0 2531 NEG 112 1451 11 EBV BLMF1 GLCTLVAML effector T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*02:01 B2M MHCI -4309 chip0420_219800 11.71 8.41 Chip1 T1D_1 T1D TGCAGCGTCGGCTCCAGGGGAACTAATGAAAAACTGTTTTTT CSVGSRGTNEKLFF TRBV29-1*01 TRBJ1-4*01 136.0 6718.0 _CSVGSRGTNEKLFF 283 3984 EBV-BLMF1 EBV 0.44 2531 NEG 89 3895 10 EBV BLMF1 GLCTLVAML effector memory T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*02:01 B2M MHCI -4310 chip0420_41544 15.29 9.1 Chip1 T1D_2 T1D TGTGCCAGCAGCTCGGGACTAGTCGCCCCCGGGGAGCTGTTTTTT CASSSGLVAPGELFF TRBV2*01 TRBJ2-2*01 14.0 1377.0 _CASSSGLVAPGELFF 133 3938 EBV-BLMF1 EBV 1.0 2531 NEG 103 3835 12 EBV BLMF1 GLCTLVAML effector T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*02:01 B2M MHCI -4311 chip0420_633954 11.86 8.36 Chip1 T1D_1 T1D TGTGTGGTGAACGGGGAGGATAGCAGCTATAAATTGATCTTC CVVNGEDSSYKLIF TRAV12-1*01 TRAJ12*01 131.0 4463.0 TGTGCCAGCAGTGAAGGGCGAGTCTCTCCGGGCGAAGCTTTCTTT CASSEGRVSPGEAFF TRBV2*01 TRBJ1-1*01 85.0 3765.0 CVVNGEDSSYKLIF_CASSEGRVSPGEAFF 9 2245 EBV-BLMF1 EBV 0.42 2531 NEG 103 2142 10 EBV BLMF1 GLCTLVAML effector memory T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*02:01 B2M MHCI -4312 chip0420_720134 5.62 12.46 Chip1 T1D_1 T1D TGTGCTTTCATGCCGAATGCCGGTGGTACTAGCTATGGCAAGCTGACATTT CAFMPNAGGTSYGKLTF TRAV38-1*01 TRAJ52*01 32.0 1074.0 CAFMPNAGGTSYGKLTF_ 1 4481 M1 FLU 0.86 1250 M1 97 4384 7 InfluenzaA M1 GILGFVFTL transitional T cells between effector and memory populations PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*02:01 B2M MHCI -4313 chip0420_692705 8.67 10.6 Chip1 T1D_2 T1D TGCAGCGTGGGGACAGGGGGAACTAATGAAAAACTGTTTTTT CSVGTGGTNEKLFF TRBV29-1*01 TRBJ1-4*01 126.0 5576.0 _CSVGTGGTNEKLFF 638 3860 EBV-BLMF1 EBV 1.0 2531 NEG 96 3764 8 EBV BLMF1 GLCTLVAML effector memory T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*02:01 B2M MHCI -4314 chip0420_186486 14.37 13.3 Chip1 T1D_2 T1D TGCAGCGTGGGGACAGGGGGAACTAATGAAAAACTGTTTTTT CSVGTGGTNEKLFF TRBV29-1*01 TRBJ1-4*01 65.0 3099.0 _CSVGTGGTNEKLFF 638 1752 EBV-BLMF1 EBV 0.75 2531 NEG 97 1655 12 EBV BLMF1 GLCTLVAML effector T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*02:01 B2M MHCI -4315 chip0420_84894 10.01 9.55 Chip1 T1D_1 T1D TGTGCCAGCAGCCAAAGCCCGGGTGGTACGCAGTATTTT CASSQSPGGTQYF TRBV14*01 TRBJ2-3*01 1.0 37.0 _CASSQSPGGTQYF 94 3166 EBV-BLMF1 EBV 0.86 2531 NEG 93 3073 8 EBV BLMF1 GLCTLVAML effector memory T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*02:01 B2M MHCI -4316 chip0420_386080 8.72 13.81 Chip1 T1D_1 T1D _ 6746 2891 M1 FLU 1.0 1250 NEG 93 2798 11 InfluenzaA M1 GILGFVFTL effector T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*02:01 B2M MHCI -4317 chip0420_34231 -3.03 14.3 Chip1 T1D_1 T1D _ 6746 2997 PGT-178 PGT 0.6 1480 PGT-178 90 2907 1 HomoSapiens PGT LLAGIGTVPI Naive T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*02:01 B2M MHCI -4318 chip0420_599548 6.0 12.47 Chip1 healthy_1 healthy _ 6746 4759 M1 FLU 0.84 1250 M1 77 4682 7 InfluenzaA M1 GILGFVFTL transitional T cells between effector and memory populations PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*02:01 B2M MHCI -4319 chip0420_821814 14.59 11.12 Chip1 T1D_1 T1D TGTGCCAGCAGTTCGGGACAGGTACTTCCCAATGAGCAGTTCTTC CASSSGQVLPNEQFF TRBV2*01 TRBJ2-1*01 45.0 3855.0 _CASSSGQVLPNEQFF 61 2062 EBV-BLMF1 EBV 0.57 2531 NEG 89 1973 12 EBV BLMF1 GLCTLVAML effector T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*02:01 B2M MHCI -4320 chip0420_700132 -3.5 10.76 Chip1 T1D_1 T1D TGTGCCAGCAGTTTCGGGACAGGGGATGGCTACACCTTC CASSFGTGDGYTF TRBV12-3*01,TRBV12-4*01 TRBJ1-2*01 11.0 439.0 _CASSFGTGDGYTF 1 4230 POL-132-140 HIV 1.0 37 NEG 93 4137 2 HIV-1 POL LVGPTPVNI Naive T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*02:01 B2M MHCI -4321 chip0420_611343 8.25 11.85 Chip1 healthy_1 healthy _ 6746 5654 M1 FLU 0.71 1250 M1 77 5577 7 InfluenzaA M1 GILGFVFTL transitional T cells between effector and memory populations PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*02:01 B2M MHCI -4322 chip0420_634915 -2.42 7.58 Chip1 healthy_1 healthy TGTGCTGTGAGAGACCGAAGCTTT CAVRDRSF TRAV3*01 TRAJ34*01 20.0 1974.0 TGTGCCAGCAGTTTCGAACTAGCGGGAGGTGAGCAGTACTTC CASSFELAGGEQYF TRBV27*01 TRBJ2-7*01 68.0 3948.0 CAVRDRSF_CASSFELAGGEQYF 1 6069 PGT-178 PGT 0.8 1480 NEG 97 5972 3 HomoSapiens PGT LLAGIGTVPI Naive T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*02:01 B2M MHCI -4323 chip0420_350332 -2.03 9.09 Chip1 T1D_1 T1D TGTGCAATGGGCGACTACAAGCTCAGCTTT CAMGDYKLSF TRAV12-3*01 TRAJ20*01 1.0 43.0 CAMGDYKLSF_ 1 5388 MART1-ALA MART1 0.53 269 MART1-ALA 81 5307 3 HomoSapiens MART1 ALAGIGILTV Naive T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*02:01 B2M MHCI -4324 chip0420_429511 0.01 8.99 Chip1 healthy_2 healthy _ 6746 4612 PGT-178 PGT 0.58 1480 PGT-178 90 4522 4 HomoSapiens PGT LLAGIGTVPI Naive T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*02:01 B2M MHCI -4325 chip0420_50437 5.99 12.83 Chip1 healthy_2 healthy TGTGCCAGTAGTTCCCGATCTAGTGGGACGCAGTATTTT CASSSRSSGTQYF TRBV19*01 TRBJ2-3*01 27.0 755.0 _CASSSRSSGTQYF 1 4583 M1 FLU 0.43 1250 NEG 86 4497 7 InfluenzaA M1 GILGFVFTL transitional T cells between effector and memory populations PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*02:01 B2M MHCI -4326 chip0420_353881 7.1 10.48 Chip1 T1D_1 T1D _ 6746 6778 M1 FLU 0.76 1250 M1 97 6681 7 InfluenzaA M1 GILGFVFTL transitional T cells between effector and memory populations PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*02:01 B2M MHCI -4327 chip0420_121696 6.77 13.22 Chip1 T1D_1 T1D _ 6746 3007 M1 FLU 0.96 1250 M1 90 2917 7 InfluenzaA M1 GILGFVFTL transitional T cells between effector and memory populations PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*02:01 B2M MHCI -4328 chip0420_820969 15.58 10.44 Chip1 T1D_3 T1D _ 6746 3132 GAD2-STA-10 GAD65 0.55 7 GAD2-STA-10 99 3033 12 HomoSapiens GAD2 STANTNMFTY effector T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*01:01 B2M MHCI -4329 chip0420_302931 12.86 9.78 Chip1 T1D_1 T1D TGTGCCAGTAGTCCCCACTTGGGTGCGGCGGCCGAGCAGTACTTC CASSPHLGAAAEQYF TRBV19*01 TRBJ2-7*01 11.0 711.0 _CASSPHLGAAAEQYF 10 3972 EBV-BRLF1 EBV 0.96 1264 EBV-BRLF1 88 3884 10 EBV BRLF1 YVLDHLIVV effector memory T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*02:01 B2M MHCI -4330 chip0420_47444 -3.26 12.37 Chip1 T1D_1 T1D _ 6746 3735 PGT-178 PGT 0.77 1480 PGT-178 111 3624 1 HomoSapiens PGT LLAGIGTVPI Naive T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*02:01 B2M MHCI -4331 chip0420_854535 8.33 13.93 Chip1 T1D_1 T1D TGTGCCAGCAGCCAAGAGGACAGGGCACAGGATAAGGCTGACTATGGCTACACCTTC CASSQEDRAQDKADYGYTF TRBV3-1*01 TRBJ1-2*01 3.0 39.0 _CASSQEDRAQDKADYGYTF 1 2550 M1 FLU 0.92 1250 M1 98 2452 11 InfluenzaA M1 GILGFVFTL effector T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*02:01 B2M MHCI -4332 chip0420_323758 9.74 9.85 Chip1 T1D_1 T1D TGTGCCAGCAGTTCCGGAGGGAACGTGGATACGCAGTATTTT CASSSGGNVDTQYF TRBV7-3*01 TRBJ2-3*01 26.0 1376.0 _CASSSGGNVDTQYF 47 5101 EBV-BLMF1 EBV 0.77 2531 NEG 101 5000 8 EBV BLMF1 GLCTLVAML effector memory T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*02:01 B2M MHCI -4333 chip0420_600331 6.36 13.58 Chip1 healthy_1 healthy TGCGCCAGCAGCGCGGGACAGGGACTTCCCTACGAGCAGTACTTC CASSAGQGLPYEQYF TRBV5-1*01 TRBJ2-7*01 28.0 1483.0 _CASSAGQGLPYEQYF 9 3613 M1 FLU 0.95 1250 M1 102 3511 7 InfluenzaA M1 GILGFVFTL transitional T cells between effector and memory populations PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*02:01 B2M MHCI -4334 chip0420_413476 13.24 13.57 Chip1 T1D_2 T1D TGCAGCGTGGGGACAGGGGGAACTAATGAAAAACTGTTTTTT CSVGTGGTNEKLFF TRBV29-1*01 TRBJ1-4*01 148.0 6816.0 _CSVGTGGTNEKLFF 638 1550 EBV-BLMF1 EBV 0.5 2531 NEG 86 1464 11 EBV BLMF1 GLCTLVAML effector T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*02:01 B2M MHCI -4335 chip0420_240378 6.17 12.62 Chip1 T1D_1 T1D TGTGCCAGTAGTATAATCGATAGGACTCGTGGAACAGATACGCAGTATTTT CASSIIDRTRGTDTQYF TRBV19*01 TRBJ2-3*01 27.0 766.0 _CASSIIDRTRGTDTQYF 1 3695 M1 FLU 0.78 1250 M1 79 3616 7 InfluenzaA M1 GILGFVFTL transitional T cells between effector and memory populations PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*02:01 B2M MHCI -4336 chip0420_657288 6.68 12.22 Chip1 healthy_1 healthy _ 6746 3354 M1 FLU 0.76 1250 M1 82 3272 7 InfluenzaA M1 GILGFVFTL transitional T cells between effector and memory populations PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*02:01 B2M MHCI -4337 chip0420_2730 6.95 14.19 Chip1 healthy_2 healthy TGTGCCAGTAGTGGGAGAAGTACCGGGGAGCTGTTTTTT CASSGRSTGELFF TRBV19*01 TRBJ2-2*01 6.0 205.0 _CASSGRSTGELFF 2 2846 M1 FLU 0.4 1250 NEG 111 2735 7 InfluenzaA M1 GILGFVFTL transitional T cells between effector and memory populations PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*02:01 B2M MHCI -4338 chip0420_831944 11.05 10.26 Chip1 T1D_3 T1D _ 6746 4251 BZLF1-190-197 EBV 0.67 2156 NEG 84 4167 9 EBV BZLF1 RAKFKQLL effector memory T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-B*08:01 B2M MHCI -4339 chip0420_736508 11.83 13.76 Chip1 T1D_1 T1D _ 6746 1481 EBV-BRLF1 EBV 0.6 1264 NEG 82 1399 11 EBV BRLF1 YVLDHLIVV effector T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*02:01 B2M MHCI -4340 chip0420_290683 5.74 9.74 Chip1 healthy_1 healthy _ 6746 3128 EBV-LMP2A EBV 1.0 700 NEG 76 3052 6 EBV LMP2A CLGGLLTMV central memory T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*02:01 B2M MHCI -4341 chip0420_604966 13.55 11.47 Chip1 T1D_1 T1D _ 6746 1723 EBV-BLMF1 EBV 0.82 2531 NEG 107 1616 9 EBV BLMF1 GLCTLVAML effector memory T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*02:01 B2M MHCI -4342 chip0420_599524 12.65 13.23 Chip1 T1D_2 T1D TGCAGTGCTAGGGACCGGACAGGAAATGGCTACACCTTC CSARDRTGNGYTF TRBV20-1*01 TRBJ1-2*01 44.0 2933.0 _CSARDRTGNGYTF 7 1433 EBV-BLMF1 EBV 0.67 2531 NEG 104 1329 11 EBV BLMF1 GLCTLVAML effector T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*02:01 B2M MHCI -4343 chip0420_305529 -3.12 13.4 Chip1 T1D_2 T1D TGTGCCAGCAGTGGGGGGCAGGGGGGGTTCTTC CASSGGQGGFF TRBV2*01 TRBJ2-1*01 10.0 774.0 _CASSGGQGGFF 1 2897 PGT-178 PGT 0.65 1480 PGT-178 74 2823 1 HomoSapiens PGT LLAGIGTVPI Naive T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*02:01 B2M MHCI -4344 chip0420_691782 -2.86 11.06 Chip1 T1D_1 T1D TGTGCCAGCAGTCCCTCAGGGGTTAGTCAGCCCCAGCATTTT CASSPSGVSQPQHF TRBV28*01 TRBJ1-5*01 3.0 93.0 _CASSPSGVSQPQHF 1 3971 GAD65-159-167 GAD65 0.56 7 GAD65-159-167 91 3880 4 HomoSapiens GAD65 ILMHCQTTL Naive T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*02:01 B2M MHCI -4345 chip0420_516850 5.89 13.14 Chip1 T1D_1 T1D TGTGCAGGGTCGGAAATGGAATATGGAAACAAACTGGTCTTT CAGSEMEYGNKLVF TRAV27*01 TRAJ47*01 30.0 2000.0 CAGSEMEYGNKLVF_ 1 4990 M1 FLU 1.0 1250 NEG 92 4898 7 InfluenzaA M1 GILGFVFTL transitional T cells between effector and memory populations PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*02:01 B2M MHCI -4346 chip0420_251578 7.57 13.45 Chip1 T1D_1 T1D _ 6746 2845 M1 FLU 1.0 1250 M1 80 2765 7 InfluenzaA M1 GILGFVFTL transitional T cells between effector and memory populations PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*02:01 B2M MHCI -4347 chip0420_706881 12.73 6.34 Chip1 T1D_3 T1D TGTGCCAGCAGCGCGGGGCAGGACAGGGCCCAAGAGACCCAGTACTTC CASSAGQDRAQETQYF TRBV2*01 TRBJ2-5*01 36.0 1821.0 _CASSAGQDRAQETQYF 1 4402 EBNA3A-158-166 EBV 0.6 444 NEG 107 4295 10 EBV EBNA3A QAKWRLQTL effector memory T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-B*08:01 B2M MHCI -4348 chip0420_629337 14.7 9.0 Chip1 T1D_1 T1D _ 6746 1987 EBV-BLMF1 EBV 0.8 2531 NEG 98 1889 12 EBV BLMF1 GLCTLVAML effector T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*02:01 B2M MHCI -4349 chip0420_657930 14.24 10.8 Chip1 T1D_1 T1D TGTGCCAGCAGCCCGGGACAGCTATCGAACACCGGGGAGCTGTTTTTT CASSPGQLSNTGELFF TRBV9*01 TRBJ2-2*01 39.0 1668.0 _CASSPGQLSNTGELFF 3 3360 EBV-BLMF1 EBV 0.75 2531 NEG 83 3277 12 EBV BLMF1 GLCTLVAML effector T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*02:01 B2M MHCI -4350 chip0420_357259 10.87 9.96 Chip1 T1D_1 T1D TGTGCCAGCAGTTCCGGAGGGAACGTGGATACGCAGTATTTT CASSSGGNVDTQYF TRBV7-3*01 TRBJ2-3*01 5.0 246.0 _CASSSGGNVDTQYF 47 4618 EBV-BLMF1 EBV 0.62 2531 NEG 91 4527 9 EBV BLMF1 GLCTLVAML effector memory T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*02:01 B2M MHCI -4351 chip0420_527198 15.7 10.02 Chip1 T1D_1 T1D _ 6746 2378 EBV-BLMF1 EBV 0.53 2531 NEG 92 2286 12 EBV BLMF1 GLCTLVAML effector T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*02:01 B2M MHCI -4352 chip0420_763468 -3.19 9.75 Chip1 healthy_1 healthy _ 6746 4234 MART1-ALA MART1 0.67 269 MART1-ALA 96 4138 2 HomoSapiens MART1 ALAGIGILTV Naive T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*02:01 B2M MHCI -4353 chip0420_673435 -2.87 9.58 Chip1 T1D_1 T1D _ 6746 5201 MART1-ALA MART1 0.5 269 NEG 82 5119 2 HomoSapiens MART1 ALAGIGILTV Naive T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*02:01 B2M MHCI -4354 chip0420_605282 8.54 12.0 Chip1 T1D_2 T1D TGCAGCGTGGGGACAGGGGGAACTAATGAAAAACTGTTTTTT CSVGTGGTNEKLFF TRBV29-1*01 TRBJ1-4*01 3.0 61.0 _CSVGTGGTNEKLFF 638 3028 EBV-BLMF1 EBV 0.86 2531 NEG 109 2919 7 EBV BLMF1 GLCTLVAML transitional T cells between effector and memory populations PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*02:01 B2M MHCI -4355 chip0420_423546 -3.0 13.74 Chip1 T1D_3 T1D TGTGCTGTTCGAACACCGGTAACCAGTTCTTTTTT CAVRTcc?GNQFFF TRAV41*01 TRAJ49*01 5.0 407.0 TGTGCCTTAAGATGGGGGAGCGGCTACACCTTC CALRWGSGYTF TRBV10-3*01 TRBJ1-2*01 17.0 1667.0 CAVRTcc?GNQFFF_CALRWGSGYTF 1 2603 GFAP-LRL-8 GFAP 0.5 18 NEG 97 2506 1 HomoSapiens GFAP LRLRLDQL Naive T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-B*08:01 B2M MHCI -4356 chip0420_688679 5.62 13.32 Chip1 T1D_1 T1D _ 6746 5723 M1 FLU 0.87 1250 M1 99 5624 7 InfluenzaA M1 GILGFVFTL transitional T cells between effector and memory populations PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*02:01 B2M MHCI -4357 chip0420_666210 9.04 9.16 Chip1 T1D_1 T1D TGCAGTGCTAGAGCCGGGACAGGGAGTGGCTACACCTTC CSARAGTGSGYTF TRBV20-1*01 TRBJ1-2*01 6.0 351.0 _CSARAGTGSGYTF 1 4337 EBV-BLMF1 EBV 0.94 2531 EBV-BLMF1 112 4225 8 EBV BLMF1 GLCTLVAML effector memory T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*02:01 B2M MHCI -4358 chip0420_141671 6.92 10.72 Chip1 tet_neg TGTGCCAGTAGTATAAATGGGGGCCGGAGGGATGGCTACACCTTC CASSINGGRRDGYTF TRBV19*01 TRBJ1-2*01 41.0 1549.0 _CASSINGGRRDGYTF 32 8307 M1 FLU 0.82 1250 M1 114 8193 7 InfluenzaA M1 GILGFVFTL transitional T cells between effector and memory populations PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*02:01 B2M MHCI -4359 chip0420_716603 -3.69 12.76 Chip1 healthy_1 healthy _ 6746 4075 PGT-178 PGT 0.5 1480 PGT-178 76 3999 1 HomoSapiens PGT LLAGIGTVPI Naive T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*02:01 B2M MHCI -4360 chip0420_339868 15.8 10.22 Chip1 T1D_1 T1D TGCAGCGTCGGCTCCAGGGGAACTAATGAAAAACTGTTTTTT CSVGSRGTNEKLFF TRBV29-1*01 TRBJ1-4*01 33.0 2017.0 _CSVGSRGTNEKLFF 283 2500 EBV-BLMF1 EBV 0.6 2531 NEG 87 2413 12 EBV BLMF1 GLCTLVAML effector T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*02:01 B2M MHCI -4361 chip0420_12492 -2.76 14.73 Chip1 healthy_1 healthy TGTGTGGTGGCCATATCTAACTTTGGAAATGAGAAATTAACCTTT CVVAISNFGNEKLTF TRAV12-1*01 TRAJ48*01 53.0 2452.0 TGTGCCAGCAGCGTGAGGGCCAGCAATCAGCCCCAGCATTTT CASSVRASNQPQHF TRBV9*01 TRBJ1-5*01 10.0 634.0 CVVAISNFGNEKLTF_CASSVRASNQPQHF 1 2564 PGT-178 PGT 0.82 1480 PGT-178 90 2474 1 HomoSapiens PGT LLAGIGTVPI Naive T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*02:01 B2M MHCI -4362 chip0420_137780 12.8 13.45 Chip1 T1D_2 T1D _ 6746 1384 EBV-BRLF1 EBV 0.85 1264 NEG 87 1297 11 EBV BRLF1 YVLDHLIVV effector T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*02:01 B2M MHCI -4363 chip0420_483374 -2.71 12.72 Chip1 healthy_1 healthy TGTGCCAGCAGTTCACGGACAGAGGAAGGTCAGCCCCAGCATTTT CASSSRTEEGQPQHF TRBV28*01 TRBJ1-5*01 44.0 1874.0 _CASSSRTEEGQPQHF 1 3628 PGT-178 PGT 0.78 1480 NEG 87 3541 1 HomoSapiens PGT LLAGIGTVPI Naive T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*02:01 B2M MHCI -4364 chip0420_569615 13.04 6.54 Chip1 T1D_3 T1D _ 6746 4864 BZLF1-190-197 EBV 0.46 2156 NEG 94 4770 10 EBV BZLF1 RAKFKQLL effector memory T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-B*08:01 B2M MHCI -4365 chip0420_261826 6.39 14.27 Chip1 T1D_1 T1D _ 6746 3789 M1 FLU 0.86 1250 M1 95 3694 7 InfluenzaA M1 GILGFVFTL transitional T cells between effector and memory populations PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*02:01 B2M MHCI -4366 chip0420_255366 7.82 11.77 Chip1 healthy_1 healthy _ 6746 3980 M1 FLU 0.57 1250 M1 91 3889 7 InfluenzaA M1 GILGFVFTL transitional T cells between effector and memory populations PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*02:01 B2M MHCI -4367 chip0420_691611 -0.55 10.46 Chip1 T1D_1 T1D _ 6746 5983 PGT-178 PGT 0.82 1480 PGT-178 82 5901 3 HomoSapiens PGT LLAGIGTVPI Naive T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*02:01 B2M MHCI -4368 chip0420_571277 12.03 13.01 Chip1 T1D_1 T1D TGTGCCGTGGACCCATGGGGTAACCAGTTCTATTTT CAVDPWGNQFYF TRAV39*01 TRAJ49*01 24.0 1899.0 TGTGCCACCCAACAGGGGAGGGACAGTCAGCCCCAGCATTTT CATQQGRDSQPQHF TRBV28*01 TRBJ1-5*01 22.0 1254.0 CAVDPWGNQFYF_CATQQGRDSQPQHF 16 1515 EBV-BLMF1 EBV 0.8 2531 NEG 99 1416 11 EBV BLMF1 GLCTLVAML effector T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*02:01 B2M MHCI -4369 chip0420_72818 10.37 8.01 Chip1 T1D_1 T1D _ 6746 4065 EBV-BRLF1 EBV 0.97 1264 EBV-BRLF1 111 3954 10 EBV BRLF1 YVLDHLIVV effector memory T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*02:01 B2M MHCI -4370 chip0420_705358 -1.89 8.34 Chip1 healthy_1 healthy TGCGGCACAGAGAACGGATTTCAGGGAGCCCAGAAGCTGGTATTT CGTENGFQGAQKLVF TRAV30*01 TRAJ54*01 3.0 298.0 CGTENGFQGAQKLVF_ 1 4970 ZNT8-16-24 ZNT8 0.48 39 NEG 87 4883 4 HomoSapiens ZNT8 KMYAFTLES Naive T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*02:01 B2M MHCI -4371 chip0420_695578 12.6 8.36 Chip1 T1D_2 T1D TGTGCCAGCAGTTACATGTCCGGCGAAGCTTTCTTT CASSYMSGEAFF TRBV6-2*01,TRBV6-3*01 TRBJ1-1*01 34.0 2285.0 _CASSYMSGEAFF 8 2274 EBV-BRLF1 EBV 1.0 1264 NEG 104 2170 10 EBV BRLF1 YVLDHLIVV effector memory T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*02:01 B2M MHCI -4372 chip0420_182226 6.86 12.23 Chip1 healthy_2 healthy _ 6746 3581 NP140-148 FLU 0.71 102 NEG 99 3482 7 InfluenzaA NP HSNLNDATY transitional T cells between effector and memory populations PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*01:01 B2M MHCI -4373 chip0420_874689 9.04 11.29 Chip1 T1D_2 T1D TGTGCCGTGAAGGACACCGACAAGCTCATCTTT CAVKDTDKLIF TRAV8-1*01 TRAJ34*01 23.0 2046.0 CAVKDTDKLIF_ 56 3209 EBV-BRLF1 EBV 0.74 1264 NEG 86 3123 9 EBV BRLF1 YVLDHLIVV effector memory T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*02:01 B2M MHCI -4374 chip0420_389109 12.58 13.42 Chip1 T1D_2 T1D TGCGCCAGCAGAGCGGGAGCCGGGGATACGCAGTATTTT CASRAGAGDTQYF TRBV10-2*01 TRBJ2-3*01 28.0 2010.0 _CASRAGAGDTQYF 59 1519 EBV-BLMF1 EBV 1.0 2531 NEG 94 1425 11 EBV BLMF1 GLCTLVAML effector T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*02:01 B2M MHCI -4375 chip0420_83828 6.26 13.98 Chip1 T1D_1 T1D _ 6746 3547 M1 FLU 0.83 1250 M1 97 3450 7 InfluenzaA M1 GILGFVFTL transitional T cells between effector and memory populations PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*02:01 B2M MHCI -4376 chip0420_822286 -4.04 9.11 Chip1 healthy_1 healthy TGTGCAATGAGCCCCTCTAACTTTGGAAATGAGAAATTAACCTTT CAMSPSNFGNEKLTF TRAV12-3*01 TRAJ48*01 40.0 2060.0 CAMSPSNFGNEKLTF_ 4 5966 PGT-178 PGT 0.55 1480 PGT-178 71 5895 2 HomoSapiens PGT LLAGIGTVPI Naive T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*02:01 B2M MHCI -4377 chip0420_491815 -3.71 12.44 Chip1 healthy_1 healthy _ 6746 3429 PGT-178 PGT 0.79 1480 PGT-178 81 3348 1 HomoSapiens PGT LLAGIGTVPI Naive T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*02:01 B2M MHCI -4378 chip0420_93251 -3.72 11.95 Chip1 healthy_1 healthy TGTGCCAGCAGTGAACCCCCCTACGAGCAGTACTTC CASSEPPYEQYF TRBV25-1*01 TRBJ2-7*01 26.0 1969.0 _CASSEPPYEQYF 1 3745 GP160-311-320 HIV 0.71 109 NEG 90 3655 1 HIV-1 GP160 RGPGRAFVTI Naive T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*02:01 B2M MHCI -4379 chip0420_612795 8.26 13.62 Chip1 T1D_1 T1D TGTGCCGCCGCGACAGGGCTCTATGGCTACACCTTC CAAATGLYGYTF TRBV19*01 TRBJ1-2*01 2.0 28.0 _CAAATGLYGYTF 6 2812 M1 FLU 0.69 1250 M1 90 2722 7 InfluenzaA M1 GILGFVFTL transitional T cells between effector and memory populations PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*02:01 B2M MHCI -4380 chip0420_294220 8.99 8.32 Chip1 T1D_3 T1D TATGCCAGCAGTCTCCACCTTCGACAGGATGAACAGCCCCAGCATTTT YASSLHLRQDEQPQHF TRBV28*01 TRBJ1-5*01 30.0 1226.0 _YASSLHLRQDEQPQHF 1 5266 EBNA3A-158-166 EBV 0.71 444 NEG 110 5156 8 EBV EBNA3A QAKWRLQTL effector memory T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-B*08:01 B2M MHCI -4381 chip0420_157083 -3.05 14.15 Chip1 T1D_1 T1D TGTGCCTGGAGTGTACTGGGGGACCCCTACGAGCAGTACTTC CAWSVLGDPYEQYF TRBV30*01 TRBJ2-7*01 21.0 945.0 _CAWSVLGDPYEQYF 1 2323 HCVNS4B-1807-1816 HCV 0.62 74 NEG 110 2213 1 HCV NS4B LLFNILGGWV Naive T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*02:01 B2M MHCI -4382 chip0420_280872 -4.15 9.23 Chip1 healthy_1 healthy TGTGCCAGCAGTTTTGGGACAGGGGGCGGCACAGATACGCAGTATTTT CASSFGTGGGTDTQYF TRBV28*01 TRBJ2-3*01 42.0 2464.0 _CASSFGTGGGTDTQYF 1 4901 PGT-178 PGT 0.47 1480 NEG 91 4810 2 HomoSapiens PGT LLAGIGTVPI Naive T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*02:01 B2M MHCI -4383 chip0420_267737 13.61 7.67 Chip1 T1D_1 T1D TGCAGCGTCGGCTCCAGGGGAACTAATGAAAAACTGTTTTTT CSVGSRGTNEKLFF TRBV29-1*01 TRBJ1-4*01 85.0 4579.0 _CSVGSRGTNEKLFF 283 2698 EBV-BLMF1 EBV 0.5 2531 NEG 102 2596 10 EBV BLMF1 GLCTLVAML effector memory T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*02:01 B2M MHCI -4384 chip0420_224911 13.06 13.35 Chip1 T1D_1 T1D _ 6746 1277 EBV-BLMF1 EBV 0.64 2531 NEG 87 1190 11 EBV BLMF1 GLCTLVAML effector T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*02:01 B2M MHCI -4385 chip0420_5716 13.38 10.06 Chip1 T1D_1 T1D TGTGCCAGCAGCACGGGACAGCTATCGAACACCGGGGAGCTGTTTTTT CASSTGQLSNTGELFF TRBV9*01 TRBJ2-2*01 14.0 481.0 _CASSTGQLSNTGELFF 82 2947 EBV-BLMF1 EBV 1.0 2531 NEG 98 2849 12 EBV BLMF1 GLCTLVAML effector T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*02:01 B2M MHCI -4386 chip0420_216191 9.84 13.09 Chip1 T1D_2 T1D _ 6746 1941 EBV-LMP2A EBV 0.67 700 NEG 98 1843 6 EBV LMP2A CLGGLLTMV central memory T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*02:01 B2M MHCI -4387 chip0420_522169 8.4 11.26 Chip1 T1D_2 T1D TGTGCCAGCAACTTAGCGGGGAACAATGAGCAGTTCTTC CASNLAGNNEQFF TRBV9*01 TRBJ2-1*01 1.0 27.0 _CASNLAGNNEQFF 15 4531 EBV-BLMF1 EBV 0.79 2531 EBV-BLMF1 85 4446 7 EBV BLMF1 GLCTLVAML transitional T cells between effector and memory populations PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*02:01 B2M MHCI -4388 chip0420_15588 -4.7 9.83 Chip1 healthy_1 healthy _ 6746 4574 M1 FLU 0.61 1250 NEG 79 4495 2 InfluenzaA M1 GILGFVFTL Naive T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*02:01 B2M MHCI -4389 chip0420_533590 14.71 10.58 Chip1 T1D_1 T1D TGTGCCAGCAGGGCACTACTAGGGGGTAAAGAGACCCAGTACTTC CASRALLGGKETQYF TRBV6-1*01 TRBJ2-5*01 6.0 114.0 _CASRALLGGKETQYF 3 3392 EBV-BRLF1 EBV 0.92 1264 NEG 87 3305 12 EBV BRLF1 YVLDHLIVV effector T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*02:01 B2M MHCI -4390 chip0420_386245 -3.96 12.1 Chip1 T1D_1 T1D TGCGCCAGCAGTGAAGCCGGGCCTTCCTACGAGCAGTACTTC CASSEAGPSYEQYF TRBV10-2*01 TRBJ2-7*01 30.0 1909.0 _CASSEAGPSYEQYF 1 3559 GP160-311-320 HIV 0.82 109 NEG 99 3460 1 HIV-1 GP160 RGPGRAFVTI Naive T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*02:01 B2M MHCI -4391 chip0420_574055 9.49 10.17 Chip1 T1D_3 T1D TGTGCCAGCAGTCTCCACCTTCGACAGGATGAACAGCCCCAGCATTTT CASSLHLRQDEQPQHF TRBV28*01 TRBJ1-5*01 49.0 1345.0 _CASSLHLRQDEQPQHF 12 3483 EBNA3A-158-166 EBV 0.74 444 NEG 100 3383 9 EBV EBNA3A QAKWRLQTL effector memory T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-B*08:01 B2M MHCI -4392 chip0420_165133 12.46 13.29 Chip1 T1D_2 T1D _ 6746 1581 EBV-BLMF1 EBV 0.75 2531 NEG 109 1472 11 EBV BLMF1 GLCTLVAML effector T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*02:01 B2M MHCI -4393 chip0420_24640 10.92 8.32 Chip1 T1D_1 T1D TGTGCCAACAGTTCCGGAGGGAACGTGGATACGCAGTATTTT CANSSGGNVDTQYF TRBV7-3*01 TRBJ2-3*01 37.0 2016.0 _CANSSGGNVDTQYF 1 4378 EBV-BLMF1 EBV 0.6 2531 NEG 100 4278 10 EBV BLMF1 GLCTLVAML effector memory T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*02:01 B2M MHCI -4394 chip0420_216263 12.91 8.18 Chip1 T1D_1 T1D TGTGCCAGCAGCCACTTATTAGGGACAGGTTTTGGCTACACCTTC CASSHLLGTGFGYTF TRBV3-1*01 TRBJ1-2*01 29.0 1759.0 _CASSHLLGTGFGYTF 6 3536 EBV-BRLF1 EBV 0.79 1264 EBV-BRLF1 107 3429 10 EBV BRLF1 YVLDHLIVV effector memory T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*02:01 B2M MHCI -4395 chip0420_539861 12.72 8.16 Chip1 T1D_2 T1D TGCAGCGTGGGGACAGGGGGAACTAATGAAAAACTGTTTTTT CSVGTGGTNEKLFF TRBV29-1*01 TRBJ1-4*01 5.0 245.0 _CSVGTGGTNEKLFF 638 2028 EBV-BLMF1 EBV 0.64 2531 NEG 114 1914 10 EBV BLMF1 GLCTLVAML effector memory T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*02:01 B2M MHCI -4396 chip0420_493297 11.89 7.48 Chip1 T1D_2 T1D TGTGCCAGCAGCCCCTCGACTAGCGGGAGTGGAGAGACCCAGTACTTC CASSPSTSGSGETQYF TRBV3-1*01 TRBJ2-5*01 2.0 100.0 _CASSPSTSGSGETQYF 18 2995 EBV-BRLF1 EBV 0.91 1264 EBV-BRLF1 119 2876 10 EBV BRLF1 YVLDHLIVV effector memory T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*02:01 B2M MHCI -4397 chip0420_91054 11.76 6.31 Chip1 T1D_2 T1D TGTGCCAGCAGCTCGGGACTAGTCGCCCCCGGGGAGCTGTTTTTT CASSSGLVAPGELFF TRBV2*01 TRBJ2-2*01 13.0 599.0 _CASSSGLVAPGELFF 133 5799 EBV-BLMF1 EBV 0.75 2531 NEG 117 5682 10 EBV BLMF1 GLCTLVAML effector memory T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*02:01 B2M MHCI -4398 chip0420_756286 12.82 13.33 Chip1 T1D_1 T1D TGCGGCCCCGCGGAACCTAACGACTACAAGCTCAACTTT CGPAEPNDYKLNF TRAV30*01 TRAJ20*01 6.0 300.0 TGTGCCAGCAGCACGGGACAGCTATCGAACACCGGGGAGCTGTTTTTT CASSTGQLSNTGELFF TRBV9*01 TRBJ2-2*01 32.0 1723.0 CGPAEPNDYKLNF_CASSTGQLSNTGELFF 1 1798 EBV-BLMF1 EBV 0.6 2531 NEG 103 1695 11 EBV BLMF1 GLCTLVAML effector T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*02:01 B2M MHCI -4399 chip0420_774268 7.22 12.38 Chip1 healthy_1 healthy _ 6746 3462 EBV-BRLF1 EBV 0.86 1264 EBV-BRLF1 85 3377 7 EBV BRLF1 YVLDHLIVV transitional T cells between effector and memory populations PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*02:01 B2M MHCI -4400 chip0420_695675 10.96 10.2 Chip1 healthy_1 healthy TGTGCAATGAGAGAGGGAGGCAACTTCAACAAATTTTACTTG CAMREGGNFNKFYL TRAV14/DV4*01 TRAJ21*01 41.0 2235.0 TGCAGTGCTTCTCGGGCTCTTGATCAGCCCCAGCATTTT CSASRALDQPQHF TRBV20-1*01 TRBJ1-5*01 36.0 1894.0 CAMREGGNFNKFYL_CSASRALDQPQHF 1 3824 EBV-BRLF1 EBV 0.92 1264 EBV-BRLF1 102 3722 9 EBV BRLF1 YVLDHLIVV effector memory T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*02:01 B2M MHCI -4401 chip0420_260872 9.78 11.12 Chip1 T1D_2 T1D TGTGTGGTGAACGGCAGGGATAGCAGCTATAAATTGATCTTC CVVNGRDSSYKLIF TRAV12-1*01 TRAJ12*01 48.0 2176.0 CVVNGRDSSYKLIF_ 17 3832 EBV-BLMF1 EBV 0.6 2531 NEG 88 3744 9 EBV BLMF1 GLCTLVAML effector memory T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*02:01 B2M MHCI -4402 chip0420_348450 5.99 12.42 Chip1 T1D_1 T1D TGTGCCAGTAGTAGCCGGTCGACAGATACGCAGTATTTT CASSSRSTDTQYF TRBV19*01 TRBJ2-3*01 37.0 2023.0 _CASSSRSTDTQYF 6 5602 M1 FLU 1.0 1250 M1 104 5498 7 InfluenzaA M1 GILGFVFTL transitional T cells between effector and memory populations PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*02:01 B2M MHCI -4403 chip0420_843796 9.65 9.42 Chip1 T1D_1 T1D _ 6746 4019 EBV-BLMF1 EBV 0.86 2531 NEG 90 3929 8 EBV BLMF1 GLCTLVAML effector memory T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*02:01 B2M MHCI -4404 chip0420_367838 8.11 11.02 Chip1 healthy_1 healthy _ 6746 4734 M1 FLU 0.94 1250 M1 94 4640 7 InfluenzaA M1 GILGFVFTL transitional T cells between effector and memory populations PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*02:01 B2M MHCI -4405 chip0420_142788 7.41 12.51 Chip1 T1D_2 T1D _ 6746 3909 PGT-178 PGT 0.75 1480 PGT-178 107 3802 7 HomoSapiens PGT LLAGIGTVPI transitional T cells between effector and memory populations PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*02:01 B2M MHCI -4406 chip0420_454654 -3.93 8.6 Chip1 healthy_1 healthy TGTGCCAGCAGTGAAGGACCCCTGACAGACGGATATGGCTACACCTTC CASSEGPLTDGYGYTF TRBV2*01 TRBJ1-2*01 10.0 647.0 _CASSEGPLTDGYGYTF 1 5739 PGT-178 PGT 0.5 1480 PGT-178 84 5655 2 HomoSapiens PGT LLAGIGTVPI Naive T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*02:01 B2M MHCI -4407 chip0420_100802 6.55 10.48 Chip1 T1D_2 T1D _ 6746 6544 EBV-LMP2A EBV 0.57 700 NEG 89 6455 6 EBV LMP2A CLGGLLTMV central memory T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*02:01 B2M MHCI -4408 chip0420_857224 11.7 7.77 Chip1 T1D_2 T1D _ 6746 3993 EBV-BRLF1 EBV 0.91 1264 NEG 85 3908 10 EBV BRLF1 YVLDHLIVV effector memory T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*02:01 B2M MHCI -4409 chip0420_851624 7.01 10.4 Chip1 T1D_2 T1D TGTGCCAGCAGTGAATCCTACGAGCAGTACTTC CASSESYEQYF TRBV2*01 TRBJ2-7*01 4.0 302.0 _CASSESYEQYF 1 4854 VPR-59-67 HIV 0.75 16 VPR-59-67 97 4757 7 HIV-1 VPR AIIRILQQL transitional T cells between effector and memory populations PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*02:01 B2M MHCI -4410 chip0420_630231 10.3 11.32 Chip1 T1D_2 T1D _ 6746 2609 EBV-BLMF1 EBV 0.5 2531 NEG 103 2506 9 EBV BLMF1 GLCTLVAML effector memory T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*02:01 B2M MHCI -4411 chip0420_445859 6.29 11.88 Chip1 T1D_1 T1D TGTGCCAGTAGTATGGGGGCGCATGGCTACACCTTC CASSMGAHGYTF TRBV19*01 TRBJ1-2*01 11.0 967.0 _CASSMGAHGYTF 6 4721 M1 FLU 0.95 1250 M1 96 4625 7 InfluenzaA M1 GILGFVFTL transitional T cells between effector and memory populations PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*02:01 B2M MHCI -4412 chip0420_433282 9.93 9.57 Chip1 T1D_1 T1D TGCAGCGTCGGCTCCAGGGGAACTAATGAAAAACTGTTTTTT CSVGSRGTNEKLFF TRBV29-1*01 TRBJ1-4*01 133.0 7107.0 _CSVGSRGTNEKLFF 283 3792 EBV-BLMF1 EBV 0.89 2531 NEG 85 3707 9 EBV BLMF1 GLCTLVAML effector memory T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*02:01 B2M MHCI -4413 chip0420_523444 -2.14 9.98 Chip1 T1D_1 T1D _ 6746 4660 ZNT8-115-123 ZNT8 0.49 74 ZNT8-115-123 87 4573 3 HomoSapiens ZNT8 LLSLFSLWL Naive T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*02:01 B2M MHCI -4414 chip0420_298519 5.88 12.47 Chip1 T1D_2 T1D TGTGCCAGTAGTATGCGGTCCACCGGGGAGCTGTTTTTT CASSMRSTGELFF TRBV19*01 TRBJ2-2*01 26.0 1626.0 _CASSMRSTGELFF 1 4136 M1 FLU 0.73 1250 M1 104 4032 7 InfluenzaA M1 GILGFVFTL transitional T cells between effector and memory populations PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*02:01 B2M MHCI -4415 chip0420_54890 9.03 13.28 Chip1 healthy_1 healthy TGTGCAGGGGCGGGAAGCCAAGGAAATCTCATCTTT CAGAGSQGNLIF TRAV27*01 TRAJ42*01 1.0 12.0 CAGAGSQGNLIF_ 3 2699 M1 FLU 0.77 1250 M1 93 2606 7 InfluenzaA M1 GILGFVFTL transitional T cells between effector and memory populations PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*02:01 B2M MHCI -4416 chip0420_629640 9.47 10.27 Chip1 T1D_2 T1D TGTGCAGAGAGTACCTCGGGAGGAAAGCTTATCTTC CAESTSGGKLIF TRAV5*01 TRAJ23*01 26.0 2026.0 TGCAGCGTGGGGACAGGGGGAACTAATGAAAAACTGTTTTTT CSVGTGGTNEKLFF TRBV29-1*01 TRBJ1-4*01 105.0 5891.0 CAESTSGGKLIF_CSVGTGGTNEKLFF 107 4085 EBV-BLMF1 EBV 0.86 2531 NEG 96 3989 9 EBV BLMF1 GLCTLVAML effector memory T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*02:01 B2M MHCI -4417 chip0420_375542 11.45 11.75 Chip1 T1D_2 T1D TGTGCCAGCAGCTCGGGACTAGTCGCCCCCGGGGAGCTGTTTTTT CASSSGLVAPGELFF TRBV2*01 TRBJ2-2*01 102.0 5539.0 _CASSSGLVAPGELFF 133 2382 EBV-BLMF1 EBV 0.6 2531 NEG 118 2264 9 EBV BLMF1 GLCTLVAML effector memory T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*02:01 B2M MHCI -4418 chip0420_624518 7.39 13.21 Chip1 T1D_1 T1D TGTGCCAGTAGTGTCAGGGCAGGAGAGACCCAGTACTTC CASSVRAGETQYF TRBV19*01 TRBJ2-5*01 12.0 550.0 _CASSVRAGETQYF 23 3443 M1 FLU 0.83 1250 M1 89 3354 7 InfluenzaA M1 GILGFVFTL transitional T cells between effector and memory populations PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*02:01 B2M MHCI -4419 chip0420_300490 14.49 11.22 Chip1 T1D_1 T1D _ 6746 2388 EBV-BLMF1 EBV 0.8 2531 NEG 97 2291 12 EBV BLMF1 GLCTLVAML effector T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*02:01 B2M MHCI -4420 chip0420_261791 6.19 12.14 Chip1 healthy_1 healthy TGTGCTGTCGTAAGAAACCAGTGGCTCTCGGTTGACCTTT CAVVRNca??gtGSRLTF TRAV41*01 TRAJ10*01 32.0 2116.0 CTGTGCCAGTAGTACGCGGGGCTCCTACGAGCAGTACTTC LCQ*YAgg??gcSYEQYF TRBV19*01 TRBJ2-7*01 20.0 832.0 CAVVRNca??gtGSRLTF_LCQ*YAgg??gcSYEQYF 1 5525 M1 FLU 0.92 1250 M1 81 5444 7 InfluenzaA M1 GILGFVFTL transitional T cells between effector and memory populations PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*02:01 B2M MHCI -4421 chip0420_361965 11.31 7.97 Chip1 T1D_3 T1D TGTGCCAGCAGTCTCCACCTTCGACAGGATGAACAGCCCCAGCATTTT CASSLHLRQDEQPQHF TRBV28*01 TRBJ1-5*01 30.0 1014.0 _CASSLHLRQDEQPQHF 12 4468 EBNA3A-158-166 EBV 0.5 444 NEG 102 4366 10 EBV EBNA3A QAKWRLQTL effector memory T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-B*08:01 B2M MHCI -4422 chip0420_605885 7.95 11.92 Chip1 healthy_1 healthy TGTGCAGGCGTCTGGGGCTCTAGCAACACAGGCAAACTAATCTTT CAGVWGSSNTGKLIF TRAV27*01 TRAJ37*01 83.0 2942.0 TGTGCCAGTAGTATACGGGCAGCCTACGAGCAGTACTTC CASSIRAAYEQYF TRBV19*01 TRBJ2-7*01 1.0 22.0 CAGVWGSSNTGKLIF_CASSIRAAYEQYF 1 3880 M1 FLU 0.93 1250 NEG 96 3784 7 InfluenzaA M1 GILGFVFTL transitional T cells between effector and memory populations PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*02:01 B2M MHCI -4423 chip0420_645371 -2.88 11.92 Chip1 T1D_1 T1D _ 6746 4825 PGT-178 PGT 0.42 1480 PGT-178 76 4749 1 HomoSapiens PGT LLAGIGTVPI Naive T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*02:01 B2M MHCI -4424 chip0420_630916 -4.31 9.48 Chip1 healthy_1 healthy TGCGCCAGCAGCCTCTCGCGGGGGACCTACGAGCAGTACTTC CASSLSRGTYEQYF TRBV4-3*01 TRBJ2-7*01 41.0 3030.0 _CASSLSRGTYEQYF 1 4540 POL-334-342 HIV 0.46 12 NEG 75 4465 4 HIV-1 POL VIYQYMDDL Naive T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*02:01 B2M MHCI -4425 chip0420_435330 12.01 6.59 Chip1 T1D_1 T1D TGCAGCGTCGGCTCCAGGGGAACTAATGAAAAACTGTTTTTT CSVGSRGTNEKLFF TRBV29-1*01 TRBJ1-4*01 188.0 7201.0 _CSVGSRGTNEKLFF 283 4350 EBV-BLMF1 EBV 0.8 2531 NEG 90 4260 10 EBV BLMF1 GLCTLVAML effector memory T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*02:01 B2M MHCI -4426 chip0420_195228 -4.14 9.54 Chip1 healthy_1 healthy TGTGCAATGACCATATCTAACTTTGGAAATGAGAAATTAACCTTT CAMTISNFGNEKLTF TRAV12-3*01 TRAJ48*01 64.0 2667.0 CAMTISNFGNEKLTF_ 2 5173 PGT-178 PGT 0.68 1480 PGT-178 77 5096 2 HomoSapiens PGT LLAGIGTVPI Naive T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*02:01 B2M MHCI -4427 chip0420_835725 -2.3 7.56 Chip1 T1D_1 T1D TGTGCCAGCAGCCACCCCGCGGACTTAGATACGCAGTATTTT CASSHPADLDTQYF TRBV7-3*01 TRBJ2-3*01 51.0 2127.0 _CASSHPADLDTQYF 1 5984 GP160-311-320 HIV 0.85 109 GP160-311-320 103 5881 2 HIV-1 GP160 RGPGRAFVTI Naive T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*02:01 B2M MHCI -4428 chip0420_753275 -0.71 9.59 Chip1 T1D_1 T1D _ 6746 4323 PGT-178 PGT 0.58 1480 NEG 85 4238 4 HomoSapiens PGT LLAGIGTVPI Naive T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*02:01 B2M MHCI -4429 chip0420_606742 11.08 11.82 Chip1 T1D_1 T1D _ 6746 2351 EBV-BLMF1 EBV 0.6 2531 NEG 93 2258 9 EBV BLMF1 GLCTLVAML effector memory T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*02:01 B2M MHCI -4430 chip0420_541408 -3.11 12.22 Chip1 T1D_1 T1D _ 6746 3141 EBV-BRLF1 EBV 0.83 1264 NEG 78 3063 1 EBV BRLF1 YVLDHLIVV Naive T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*02:01 B2M MHCI -4431 chip0420_487634 6.14 12.71 Chip1 healthy_1 healthy TGTGCTTTCATGGTTAATGCTGGTGGTACTAGCTATGGAAAGCTGACATTT CAFMVNAGGTSYGKLTF TRAV38-1*01 TRAJ52*01 5.0 367.0 CAFMVNAGGTSYGKLTF_ 2 3883 M1 FLU 0.49 1250 M1 95 3788 7 InfluenzaA M1 GILGFVFTL transitional T cells between effector and memory populations PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*02:01 B2M MHCI -4432 chip0420_430805 -3.3 10.27 Chip1 T1D_1 T1D TGCGCCAGCAGCTTACAGGGTGGGGAAAAACTGTTTTTT CASSLQGGEKLFF TRBV7-9*01 TRBJ1-4*01 9.0 334.0 _CASSLQGGEKLFF 1 4134 PGT-178 PGT 0.79 1480 PGT-178 91 4043 2 HomoSapiens PGT LLAGIGTVPI Naive T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*02:01 B2M MHCI -4433 chip0420_378800 12.35 11.08 Chip1 T1D_1 T1D TGCAGTGCTAGAGACGGGACAGGGAATGGCTACACCTTC CSARDGTGNGYTF TRBV20-1*01 TRBJ1-2*01 1.0 23.0 _CSARDGTGNGYTF 14 2590 EBV-BLMF1 EBV 0.89 2531 EBV-BLMF1 85 2505 9 EBV BLMF1 GLCTLVAML effector memory T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*02:01 B2M MHCI -4434 chip0420_205397 -1.81 9.05 Chip1 T1D_1 T1D _ 6746 5092 MART1-ALA MART1 0.57 269 MART1-ALA 75 5017 3 HomoSapiens MART1 ALAGIGILTV Naive T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*02:01 B2M MHCI -4435 chip0420_428883 -3.98 9.51 Chip1 healthy_1 healthy TGTGCCAGCAGCGAGGACCTTAGCTCCTACGAGCAGTACTTC CASSEDLSSYEQYF TRBV14*01 TRBJ2-7*01 20.0 742.0 _CASSEDLSSYEQYF 1 5334 GAG-433-442 HIV 0.41 19 NEG 85 5249 2 HIV-1 GAG FLGKIWPSYK Naive T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*02:01 B2M MHCI -4436 chip0420_52340 15.18 11.39 Chip1 T1D_1 T1D TGCAGCGTCACAACCGACAGGAATAGCAATCAGCCCCAGCATTTT CSVTTDRNSNQPQHF TRBV29-1*01 TRBJ1-5*01 44.0 1720.0 _CSVTTDRNSNQPQHF 10 2449 EBV-BLMF1 EBV 0.6 2531 NEG 88 2361 12 EBV BLMF1 GLCTLVAML effector T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*02:01 B2M MHCI -4437 chip0420_109139 -0.78 7.12 Chip1 T1D_3 T1D _ 6746 4153 EBNA3A-158-166 EBV 0.5 444 NEG 94 4059 3 EBV EBNA3A QAKWRLQTL Naive T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-B*08:01 B2M MHCI -4438 chip0420_749966 -3.99 11.86 Chip1 T1D_1 T1D TGTGCCGTGACAGGCGACCACAAGCTCAGCTTT CAVTGDHKLSF TRAV12-2*01 TRAJ20*01 8.0 714.0 TGCAGTGCTAGAGTTGAGACGGGATACAATGAGCAGTTCCTC CSARVETGYNEQFL TRBV20-1*01 TRBJ2-1*01 28.0 1386.0 CAVTGDHKLSF_CSARVETGYNEQFL 1 4144 PGT-178 PGT 0.8 1480 PGT-178 93 4051 1 HomoSapiens PGT LLAGIGTVPI Naive T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*02:01 B2M MHCI -4439 chip0420_20822 10.9 8.93 Chip1 T1D_1 T1D _ 6746 3358 EBV-BLMF1 EBV 0.75 2531 NEG 90 3268 10 EBV BLMF1 GLCTLVAML effector memory T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*02:01 B2M MHCI -4440 chip0420_620857 11.71 8.02 Chip1 T1D_3 T1D _ 6746 3175 BZLF1-190-197 EBV 0.8 2156 NEG 98 3077 10 EBV BZLF1 RAKFKQLL effector memory T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-B*08:01 B2M MHCI -4441 chip0420_503854 -3.52 12.66 Chip1 T1D_1 T1D _ 6746 4808 ZNT8-16-24 ZNT8 0.64 39 NEG 78 4730 1 HomoSapiens ZNT8 KMYAFTLES Naive T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*02:01 B2M MHCI -4442 chip0420_849298 14.7 10.73 Chip1 T1D_1 T1D _ 6746 2687 EBV-BRLF1 EBV 0.87 1264 NEG 78 2609 12 EBV BRLF1 YVLDHLIVV effector T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*02:01 B2M MHCI -4443 chip0420_592649 8.46 11.09 Chip1 T1D_2 T1D _ 6746 3890 EBV-BRLF1 EBV 0.87 1264 NEG 94 3796 7 EBV BRLF1 YVLDHLIVV transitional T cells between effector and memory populations PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*02:01 B2M MHCI -4444 chip0420_662081 11.27 10.66 Chip1 T1D_1 T1D _ 6746 3138 EBV-BLMF1 EBV 0.89 2531 EBV-BLMF1 81 3057 9 EBV BLMF1 GLCTLVAML effector memory T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*02:01 B2M MHCI -4445 chip0420_36768 10.31 10.6 Chip1 T1D_1 T1D TGTGCCAGCAGTTCGGGACAGGTACTTCCCAATGAGCAGTTCTTC CASSSGQVLPNEQFF TRBV2*01 TRBJ2-1*01 56.0 2907.0 _CASSSGQVLPNEQFF 61 3187 EBV-BLMF1 EBV 0.77 2531 NEG 104 3083 9 EBV BLMF1 GLCTLVAML effector memory T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*02:01 B2M MHCI -4446 chip0420_488366 12.55 10.11 Chip1 T1D_1 T1D TGTGCCGCCTTTGAATGCTCGCAACATCCGTCAGCTCATTGGC CAAFECS??cNIRQLIG TRAV36/DV7*01 TRAJ38*01 4.0 400.0 TGTGCCAGCAGCACGGGACAGCTATCGAACACCGGGGAGCTGTTTTTT CASSTGQLSNTGELFF TRBV9*01 TRBJ2-2*01 36.0 1754.0 CAAFECS??cNIRQLIG_CASSTGQLSNTGELFF 1 2357 EBV-BLMF1 EBV 0.83 2531 NEG 90 2267 9 EBV BLMF1 GLCTLVAML effector memory T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*02:01 B2M MHCI -4447 chip0420_478538 11.1 11.1 Chip1 T1D_1 T1D TGTGCCGTGAAGGACACCGACAAGCTCATCTTT CAVKDTDKLIF TRAV8-1*01 TRAJ34*01 4.0 449.0 CAVKDTDKLIF_ 56 2702 EBV-BRLF1 EBV 0.95 1264 EBV-BRLF1 102 2600 9 EBV BRLF1 YVLDHLIVV effector memory T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*02:01 B2M MHCI -4448 chip0420_273094 -2.58 9.23 Chip1 T1D_1 T1D _ 6746 5279 ZNT8-153-161 ZNT8 0.92 41 ZNT8-153-161 115 5164 2 HomoSapiens ZNT8 VVTGVLVYL Naive T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*02:01 B2M MHCI -4449 chip0420_327489 11.08 7.52 Chip1 T1D_1 T1D _ 6746 3982 EBV-LMP2-FLY EBV 0.68 355 EBV-LMP2-FLY 94 3888 10 EBV LMP2 FLYALALLL effector memory T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*02:01 B2M MHCI -4450 chip0420_818143 -3.6 9.39 Chip1 healthy_2 healthy _ 6746 4360 NP413-421 FLU 0.4 16 NEG 92 4268 2 InfluenzaA NP ALKCKGFHV Naive T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-B*08:01 B2M MHCI -4451 chip0420_583886 9.29 13.92 Chip1 T1D_1 T1D TGTGCAGGAGCTATCGGCTCTAGCAACACAGGCAAACTAATCTTT CAGAIGSSNTGKLIF TRAV27*01 TRAJ37*01 7.0 534.0 CAGAIGSSNTGKLIF_ 1 2022 M1 FLU 0.92 1250 NEG 84 1938 11 InfluenzaA M1 GILGFVFTL effector T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*02:01 B2M MHCI -4452 chip0420_528368 -4.21 9.49 Chip1 T1D_1 T1D _ 6746 4860 GAG-433-442 HIV 0.93 19 NEG 81 4779 2 HIV-1 GAG FLGKIWPSYK Naive T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*02:01 B2M MHCI -4453 chip0420_484796 10.91 10.59 Chip1 T1D_1 T1D TGTGCCGTGGACCCATGGGGTAACCAGTTCTATTTT CAVDPWGNQFYF TRAV39*01 TRAJ49*01 32.0 2168.0 TGTGCCAGCAGTTTTCTCGGGACAGGTCTCAACGAGCAGTACTTC CASSFLGTGLNEQYF TRBV28*01 TRBJ2-7*01 2.0 60.0 CAVDPWGNQFYF_CASSFLGTGLNEQYF 1 4782 EBV-BLMF1 EBV 1.0 2531 NEG 93 4689 9 EBV BLMF1 GLCTLVAML effector memory T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*02:01 B2M MHCI -4454 chip0420_435908 6.33 14.13 Chip1 T1D_1 T1D TGTGCCAGTAGTAGCCGGAGCTCCTACGAGCAGTACTCC CASSSRSSYEQYS TRBV19*01 TRBJ2-7*01 6.0 841.0 _CASSSRSSYEQYS 1 3370 M1 FLU 0.92 1250 M1 83 3287 7 InfluenzaA M1 GILGFVFTL transitional T cells between effector and memory populations PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*02:01 B2M MHCI -4455 chip0420_431475 7.22 13.3 Chip1 healthy_1 healthy TGTGCTGGAGCGGGGTGCCCGGGGAATCTCATCTTT CAGAGCPGNLIF TRAV27*01 TRAJ42*01 38.0 2036.0 CAGAGCPGNLIF_ 2 4133 M1 FLU 0.66 1250 M1 85 4048 7 InfluenzaA M1 GILGFVFTL transitional T cells between effector and memory populations PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*02:01 B2M MHCI -4456 chip0420_659956 14.45 9.76 Chip1 T1D_1 T1D TGCAGCGTCGGCTCCAGGGGAACTAATGAAAAACTGTTTTTT CSVGSRGTNEKLFF TRBV29-1*01 TRBJ1-4*01 43.0 2278.0 _CSVGSRGTNEKLFF 283 2050 EBV-BLMF1 EBV 0.75 2531 NEG 93 1957 12 EBV BLMF1 GLCTLVAML effector T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*02:01 B2M MHCI -4457 chip0420_597726 7.31 12.86 Chip1 healthy_1 healthy _ 6746 3474 M1 FLU 0.89 1250 M1 93 3381 7 InfluenzaA M1 GILGFVFTL transitional T cells between effector and memory populations PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*02:01 B2M MHCI -4458 chip0420_23599 11.13 10.28 Chip1 T1D_1 T1D _ 6746 3569 EBV-BLMF1 EBV 0.88 2531 NEG 96 3473 9 EBV BLMF1 GLCTLVAML effector memory T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*02:01 B2M MHCI -4459 chip0420_762527 11.98 13.37 Chip1 T1D_2 T1D TGCAGCGTTGGGGGCAGCTTCTATGGCTACACCTTC CSVGGSFYGYTF TRBV29-1*01 TRBJ1-2*01 54.0 5257.0 _CSVGGSFYGYTF 42 1267 EBV-BLMF1 EBV 0.7 2531 NEG 81 1186 11 EBV BLMF1 GLCTLVAML effector T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*02:01 B2M MHCI -4460 chip0420_676555 6.62 12.58 Chip1 healthy_1 healthy TGTGCCAGTAGTACACATGGGGGCAACGAGCAGTACTCC CASSTHGGNEQYS TRBV19*01 TRBJ2-7*01 28.0 1625.0 _CASSTHGGNEQYS 1 4243 M1 FLU 0.94 1250 M1 87 4156 7 InfluenzaA M1 GILGFVFTL transitional T cells between effector and memory populations PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*02:01 B2M MHCI -4461 chip0420_614012 -2.08 7.29 Chip1 healthy_2 healthy TGTGTGGTGGCCGATTTGAGAACCTCCTACGACAAGGTGATATTT CVVADLRTSYDKVIF TRAV12-1*01 TRAJ50*01 34.0 2024.0 CVVADLRTSYDKVIF_ 1 4449 G6PC2-LTS-10 IGRP 0.69 59 G6PC2-LTS-10 86 4363 3 HomoSapiens G6PC2 LTSLTILQLY Naive T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*01:01 B2M MHCI -4462 chip0420_489315 7.68 13.82 Chip1 T1D_1 T1D _ 6746 3281 M1 FLU 0.71 1250 NEG 85 3196 7 InfluenzaA M1 GILGFVFTL transitional T cells between effector and memory populations PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*02:01 B2M MHCI -4463 chip0420_354708 6.53 13.77 Chip1 healthy_2 healthy _ 6746 2718 M1 FLU 0.47 1250 NEG 77 2641 7 InfluenzaA M1 GILGFVFTL transitional T cells between effector and memory populations PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*02:01 B2M MHCI -4464 chip0420_71884 15.38 12.6 Chip1 T1D_2 T1D TGTGCAATGAATTATGGAGGAAGCCAAGGAAATCTCATCTTT CAMNYGGSQGNLIF TRAV25*01 TRAJ42*01 4.0 131.0 CAMNYGGSQGNLIF_ 1 1616 M1 FLU 0.67 1250 NEG 109 1507 7 InfluenzaA M1 GILGFVFTL transitional T cells between effector and memory populations PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*02:01 B2M MHCI -4465 chip0420_816838 6.07 12.75 Chip1 healthy_1 healthy _ 6746 4397 M1 FLU 0.87 1250 M1 85 4312 7 InfluenzaA M1 GILGFVFTL transitional T cells between effector and memory populations PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*02:01 B2M MHCI -4466 chip0420_697386 15.43 10.03 Chip1 T1D_1 T1D TGTGCCAGCAGTCCGGACCAAACTAGCTCCTACAATGAGCAGTTCTTC CASSPDQTSSYNEQFF TRBV27*01 TRBJ2-1*01 64.0 4692.0 _CASSPDQTSSYNEQFF 47 2385 EBV-BRLF1 EBV 0.77 1264 NEG 93 2292 12 EBV BRLF1 YVLDHLIVV effector T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*02:01 B2M MHCI -4467 chip0420_640987 -2.85 14.74 Chip1 T1D_1 T1D _ 6746 2236 ROTA-VP3 ROTA 1.0 41 NEG 60 2176 1 RotavirusA VP3 YLLPGWKL Naive T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*02:01 B2M MHCI -4468 chip0420_193022 6.08 12.96 Chip1 healthy_1 healthy TGTGCCAGCAGCTTAATAGGAGGACAGGGGGCAAATGGCTACACCTTC CASSLIGGQGANGYTF TRBV7-3*01 TRBJ1-2*01 37.0 1423.0 _CASSLIGGQGANGYTF 1 3531 M1 FLU 1.0 1250 M1 93 3438 7 InfluenzaA M1 GILGFVFTL transitional T cells between effector and memory populations PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*02:01 B2M MHCI -4469 chip0420_397627 -4.3 11.49 Chip1 healthy_1 healthy TGTGCAATGAGCGCAACGACTCCAAGCTCAGCTTT CAMSAac?DSKLSF TRAV12-3*01 TRAJ20*01 10.0 588.0 CAMSAac?DSKLSF_ 1 3528 ZNT8-16-24 ZNT8 1.0 39 NEG 80 3448 1 HomoSapiens ZNT8 KMYAFTLES Naive T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*02:01 B2M MHCI -4470 chip0420_95191 11.4 10.54 Chip1 T1D_1 T1D TGTGCCAGCAGTTATGAGGGTTCTGAAGCTTTCTTT CASSYEGSEAFF TRBV6-5*01,TRBV6-1*01 TRBJ1-1*01 2.0 76.0 _CASSYEGSEAFF 1 3003 EBV-BRLF1 EBV 0.95 1264 EBV-BRLF1 94 2909 9 EBV BRLF1 YVLDHLIVV effector memory T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*02:01 B2M MHCI -4471 chip0420_396835 12.28 7.45 Chip1 T1D_2 T1D TGCAGCGTGGGGACAGGGGGAACTAATGAAAAACTGTTTTTT CSVGTGGTNEKLFF TRBV29-1*01 TRBJ1-4*01 24.0 1315.0 _CSVGTGGTNEKLFF 638 2885 EBV-BLMF1 EBV 0.58 2531 NEG 102 2783 10 EBV BLMF1 GLCTLVAML effector memory T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*02:01 B2M MHCI -4472 chip0420_878943 15.97 10.57 Chip1 T1D_1 T1D TGTGCCACCCAACAGGGGAGGGACAGTCAGCCCCAGCATTTT CATQQGRDSQPQHF TRBV28*01 TRBJ1-5*01 1.0 15.0 _CATQQGRDSQPQHF 52 2554 EBV-BLMF1 EBV 0.5 2531 NEG 94 2460 12 EBV BLMF1 GLCTLVAML effector T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*02:01 B2M MHCI -4473 chip0420_169069 11.9 6.67 Chip1 T1D_3 T1D TGTGCTGTGAGACTCTCCCTATACTCTGGGGCTGGGAGTTACCAACTCACTTTC CAVRLSLYSGAGSYQLTF TRAV3*01 TRAJ28*01 44.0 2005.0 TGTGCCAGCAGTCTCCCCCTTCGCCAGGCTGAACAGCCCCAGCATTTC CASSLPLRQAEQPQHF TRBV28*01 TRBJ1-5*01 3.0 201.0 CAVRLSLYSGAGSYQLTF_CASSLPLRQAEQPQHF 1 4403 EBNA3A-158-166 EBV 0.56 444 NEG 90 4313 10 EBV EBNA3A QAKWRLQTL effector memory T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-B*08:01 B2M MHCI -4474 chip0420_795816 -2.02 7.58 Chip1 healthy_1 healthy TGTGCCAGCAGTCCCTCTGGGCTAGCGGGAACTTCTGAGCAGTTCTTC CASSPSGLAGTSEQFF TRBV25-1*01 TRBJ2-1*01 73.0 5418.0 _CASSPSGLAGTSEQFF 1 6507 EBV-BRLF1 EBV 0.67 1264 NEG 72 6435 4 EBV BRLF1 YVLDHLIVV Naive T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*02:01 B2M MHCI -4475 chip0420_858440 6.69 12.6 Chip1 healthy_1 healthy _ 6746 3613 M1 FLU 0.94 1250 M1 74 3539 7 InfluenzaA M1 GILGFVFTL transitional T cells between effector and memory populations PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*02:01 B2M MHCI -4476 chip0420_867715 -2.77 14.01 Chip1 T1D_1 T1D _ 6746 3066 EBV-LMP1-2 EBV 0.61 41 NEG 87 2979 1 EBV LMP1 YLQQNWWTL Naive T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*02:01 B2M MHCI -4477 chip0420_283822 10.12 10.46 Chip1 T1D_1 T1D _ 6746 3878 EBV-BLMF1 EBV 0.9 2531 EBV-BLMF1 99 3779 9 EBV BLMF1 GLCTLVAML effector memory T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*02:01 B2M MHCI -4478 chip0420_24246 -3.35 9.35 Chip1 healthy_1 healthy TGTGCCAGCGAAGCTGGCGAAGGGACAGGACAAGAGACCCAGTACTTC CASEAGEGTGQETQYF TRBV12-3*01,TRBV12-4*01 TRBJ2-5*01 1.0 13.0 _CASEAGEGTGQETQYF 1 4757 PGT-178 PGT 0.88 1480 PGT-178 76 4681 2 HomoSapiens PGT LLAGIGTVPI Naive T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*02:01 B2M MHCI -4479 chip0420_559862 12.06 7.0 Chip1 T1D_1 T1D _ 6746 4266 EBV-LMP2-FLY EBV 0.88 355 EBV-LMP2-FLY 92 4174 10 EBV LMP2 FLYALALLL effector memory T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*02:01 B2M MHCI -4480 chip0420_200107 16.22 11.27 Chip1 T1D_1 T1D TGCGGCACAGAGGAACCTAACGACTACAAGCTCAGCTTT CGTEEPNDYKLSF TRAV30*01 TRAJ20*01 5.0 440.0 CGTEEPNDYKLSF_ 22 2092 EBV-BLMF1 EBV 0.92 2531 NEG 79 2013 12 EBV BLMF1 GLCTLVAML effector T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*02:01 B2M MHCI -4481 chip0420_44962 8.81 10.73 Chip1 healthy_1 healthy TGTGCAATGAGAGAGGGGGGAAACTTCAACAAATTTTACTTT CAMREGGNFNKFYF TRAV14/DV4*01 TRAJ21*01 7.0 554.0 TGCAGTGCCCCCGCGCCTCCCGGGCAGCCCCAGCATTTT CSAPAPPGQPQHF TRBV20-1*01 TRBJ1-5*01 18.0 1683.0 CAMREGGNFNKFYF_CSAPAPPGQPQHF 1 3859 EBV-BRLF1 EBV 0.76 1264 EBV-BRLF1 82 3777 8 EBV BRLF1 YVLDHLIVV effector memory T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*02:01 B2M MHCI -4482 chip0420_377127 -4.03 11.18 Chip1 healthy_1 healthy _ 6746 5039 PGT-178 PGT 0.95 1480 PGT-178 76 4963 1 HomoSapiens PGT LLAGIGTVPI Naive T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*02:01 B2M MHCI -4483 chip0420_210639 8.15 7.84 Chip1 T1D_1 T1D TGCAGCGTCGGCTCCAGGGGAACTAATGAAAAACTGTTTTTT CSVGSRGTNEKLFF TRBV29-1*01 TRBJ1-4*01 92.0 3962.0 _CSVGSRGTNEKLFF 283 3433 EBV-BLMF1 EBV 0.75 2531 NEG 92 3341 8 EBV BLMF1 GLCTLVAML effector memory T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*02:01 B2M MHCI -4484 chip0420_875890 11.53 8.21 Chip1 T1D_1 T1D TGTGCTGACTTCTCCTGCTGGCCCCCACCGAAACCTTATTTGG CADFSCW??cPHRNLIW TRAV36/DV7*01 TRAJ38*01 3.0 125.0 CADFSCW??cPHRNLIW_ 1 3923 EBV-BLMF1 EBV 0.5 2531 NEG 92 3831 10 EBV BLMF1 GLCTLVAML effector memory T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*02:01 B2M MHCI -4485 chip0420_433439 11.63 13.28 Chip1 T1D_1 T1D TGCAGCGTCGGCTCCAGGGGAACTAATGAAAAACTGTTTTTT CSVGSRGTNEKLFF TRBV29-1*01 TRBJ1-4*01 14.0 707.0 _CSVGSRGTNEKLFF 283 1899 EBV-BLMF1 EBV 0.71 2531 NEG 95 1804 11 EBV BLMF1 GLCTLVAML effector T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*02:01 B2M MHCI -4486 chip0420_640107 -4.13 10.7 Chip1 healthy_2 healthy _ 6746 3236 ZNT8-VTD-9 ZNT8 0.83 65 NEG 80 3156 2 HomoSapiens ZNT8 VTDAAHLLI Naive T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*01:01 B2M MHCI -4487 chip0420_251989 11.43 12.35 Chip1 T1D_1 T1D _ 6746 2238 EBV-BLMF1 EBV 0.69 2531 NEG 100 2138 11 EBV BLMF1 GLCTLVAML effector T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*02:01 B2M MHCI -4488 chip0420_631392 11.3 11.68 Chip1 T1D_3 T1D _ 6746 2187 BZLF1-190-197 EBV 0.82 2156 NEG 74 2113 9 EBV BZLF1 RAKFKQLL effector memory T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-B*08:01 B2M MHCI -4489 chip0420_517398 11.04 10.69 Chip1 T1D_1 T1D _ 6746 5372 EBV-BLMF1 EBV 0.81 2531 EBV-BLMF1 98 5274 9 EBV BLMF1 GLCTLVAML effector memory T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*02:01 B2M MHCI -4490 chip0420_424662 -4.26 10.85 Chip1 T1D_1 T1D _ 6746 3844 PGT-178 PGT 0.77 1480 PGT-178 88 3756 2 HomoSapiens PGT LLAGIGTVPI Naive T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*02:01 B2M MHCI -4491 chip0420_308713 9.34 8.76 Chip1 T1D_3 T1D TGTGCCAGCAGTCTCCACCTTCGACAGGATGAACAGCCCCAGCATTTT CASSLHLRQDEQPQHF TRBV28*01 TRBJ1-5*01 17.0 653.0 _CASSLHLRQDEQPQHF 12 5183 EBNA3A-158-166 EBV 0.92 444 NEG 89 5094 8 EBV EBNA3A QAKWRLQTL effector memory T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-B*08:01 B2M MHCI -4492 chip0420_240799 8.99 8.44 Chip1 T1D_1 T1D _ 6746 4751 EBV-BLMF1 EBV 0.78 2531 EBV-BLMF1 101 4650 8 EBV BLMF1 GLCTLVAML effector memory T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*02:01 B2M MHCI -4493 chip0420_172023 14.72 9.85 Chip1 T1D_1 T1D TGTGCCAGCAGCACGGGACAGCTATCGAACACCGGGGAGCTGTTTTTT CASSTGQLSNTGELFF TRBV9*01 TRBJ2-2*01 24.0 1540.0 _CASSTGQLSNTGELFF 82 3340 EBV-BLMF1 EBV 0.78 2531 NEG 98 3242 12 EBV BLMF1 GLCTLVAML effector T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*02:01 B2M MHCI -4494 chip0420_32710 11.39 6.36 Chip1 T1D_2 T1D _ 6746 4075 EBV-BLMF1 EBV 0.71 2531 NEG 91 3984 10 EBV BLMF1 GLCTLVAML effector memory T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*02:01 B2M MHCI -4495 chip0420_521678 6.87 13.35 Chip1 T1D_1 T1D TGTGGCACTCAAGAGAATGACAGCTGGGGGAAATTGCAGTTT CGTQENDSWGKLQF TRAV30*01 TRAJ24*01 33.0 2189.0 CGTQENDSWGKLQF_ 2 3954 M1 FLU 0.69 1250 M1 103 3851 7 InfluenzaA M1 GILGFVFTL transitional T cells between effector and memory populations PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*02:01 B2M MHCI -4496 chip0420_712754 8.24 13.68 Chip1 healthy_1 healthy TGTGCCAGTAGTACGCGGAGCTCCTACGAGCAGTACTTC CASSTRSSYEQYF TRBV19*01 TRBJ2-7*01 13.0 756.0 _CASSTRSSYEQYF 7 2945 M1 FLU 0.76 1250 M1 75 2870 7 InfluenzaA M1 GILGFVFTL transitional T cells between effector and memory populations PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*02:01 B2M MHCI -4497 chip0420_488010 10.34 8.96 Chip1 T1D_3 T1D TGTGCCAGCAGTCTCCACCTTCGACAGGATGAACAGCCCCAGCATTTT CASSLHLRQDEQPQHF TRBV28*01 TRBJ1-5*01 18.0 856.0 _CASSLHLRQDEQPQHF 12 3860 EBNA3A-158-166 EBV 0.42 444 NEG 78 3782 10 EBV EBNA3A QAKWRLQTL effector memory T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-B*08:01 B2M MHCI -4498 chip0420_81406 -2.43 9.62 Chip1 T1D_1 T1D TGTGCCGTGATGTCTGGGGGTTACCAGAAAGTTACCTTT CAVMSGGYQKVTF TRAV12-2*01 TRAJ13*01 3.0 127.0 CAVMSGGYQKVTF_ 1 5457 PGT-178 PGT 0.97 1480 PGT-178 78 5379 2 HomoSapiens PGT LLAGIGTVPI Naive T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*02:01 B2M MHCI -4499 chip0420_880168 16.43 10.77 Chip1 T1D_2 T1D TGCAGCGTGGGGACAGGGGGAACTAATGAAAAACTGTTTTTT CSVGTGGTNEKLFF TRBV29-1*01 TRBJ1-4*01 2.0 101.0 _CSVGTGGTNEKLFF 638 1926 EBV-BLMF1 EBV 0.62 2531 NEG 80 1846 12 EBV BLMF1 GLCTLVAML effector T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*02:01 B2M MHCI -4500 chip0420_764064 9.66 11.34 Chip1 T1D_2 T1D _ 6746 2668 EBV-BLMF1 EBV 0.89 2531 NEG 92 2576 9 EBV BLMF1 GLCTLVAML effector memory T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*02:01 B2M MHCI -4501 chip0420_310390 11.4 11.71 Chip1 T1D_1 T1D TGTGCCAGCAGCCCAGTTAGCGGGTCAACCTACGAGCAGTACTTC CASSPVSGSTYEQYF TRBV3-1*01 TRBJ2-7*01 20.0 690.0 _CASSPVSGSTYEQYF 80 1949 EBV-BLMF1 EBV 0.57 2531 NEG 106 1843 9 EBV BLMF1 GLCTLVAML effector memory T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*02:01 B2M MHCI -4502 chip0420_534741 12.76 9.41 Chip1 T1D_1 T1D TGTGCCACCCAACAGGGGAGGGACAGTCAGCCCCAGCATTTT CATQQGRDSQPQHF TRBV28*01 TRBJ1-5*01 105.0 4145.0 _CATQQGRDSQPQHF 52 3856 EBV-BLMF1 EBV 0.71 2531 NEG 104 3752 10 EBV BLMF1 GLCTLVAML effector memory T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*02:01 B2M MHCI -4503 chip0420_634639 -2.2 13.92 Chip1 T1D_1 T1D _ 6746 2650 PGT-178 PGT 0.74 1480 PGT-178 96 2554 1 HomoSapiens PGT LLAGIGTVPI Naive T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*02:01 B2M MHCI -4504 chip0420_381368 7.12 13.03 Chip1 T1D_1 T1D TGTGCCAGTAGTTTTCGGTCGGCAGATACGCAGTATTTT CASSFRSADTQYF TRBV19*01 TRBJ2-3*01 1.0 31.0 _CASSFRSADTQYF 2 3367 M1 FLU 0.93 1250 NEG 96 3271 7 InfluenzaA M1 GILGFVFTL transitional T cells between effector and memory populations PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*02:01 B2M MHCI -4505 chip0420_645101 7.82 8.0 Chip1 T1D_1 T1D _ 6746 3173 EBV-BLMF1 EBV 0.57 2531 NEG 88 3085 8 EBV BLMF1 GLCTLVAML effector memory T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*02:01 B2M MHCI -4506 chip0420_287452 -2.46 14.36 Chip1 healthy_1 healthy TGTGCAATGAGCGGGTCTAACTTTGGAAATGAGAAATTAACCTTT CAMSGSNFGNEKLTF TRAV12-3*01 TRAJ48*01 68.0 2503.0 TGTGCCAGCAGCCCCCGGGCCAGCTCATATAGCAATCAGCCCCAGCATTTT CASSPRASSYSNQPQHF TRBV16*01 TRBJ1-5*01 12.0 321.0 CAMSGSNFGNEKLTF_CASSPRASSYSNQPQHF 1 2667 PGT-178 PGT 0.79 1480 PGT-178 93 2574 1 HomoSapiens PGT LLAGIGTVPI Naive T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*02:01 B2M MHCI -4507 chip0420_308339 6.66 11.89 Chip1 T1D_1 T1D _ 6746 3851 EBV-LMP2-FLY EBV 0.63 355 EBV-LMP2-FLY 92 3759 7 EBV LMP2 FLYALALLL transitional T cells between effector and memory populations PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*02:01 B2M MHCI -4508 chip0420_179655 6.06 13.14 Chip1 T1D_1 T1D TGTGCCAGTAGTATCAGATCCTCCTACGAGCAGTACTTC CASSIRSSYEQYF TRBV19*01 TRBJ2-7*01 17.0 903.0 _CASSIRSSYEQYF 36 5174 M1 FLU 0.69 1250 M1 92 5082 7 InfluenzaA M1 GILGFVFTL transitional T cells between effector and memory populations PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*02:01 B2M MHCI -4509 chip0420_59674 -3.59 10.36 Chip1 healthy_1 healthy TGTGCCAGCAGTAAAGGATCGACAGGGACCGGGGAGCTGTTTTTT CASSKGSTGTGELFF TRBV2*01 TRBJ2-2*01 15.0 756.0 _CASSKGSTGTGELFF 1 4632 PGT-178 PGT 0.81 1480 PGT-178 68 4564 2 HomoSapiens PGT LLAGIGTVPI Naive T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*02:01 B2M MHCI -4510 chip0420_505186 6.98 13.77 Chip1 T1D_1 T1D _ 6746 2928 M1 FLU 0.8 1250 NEG 77 2851 7 InfluenzaA M1 GILGFVFTL transitional T cells between effector and memory populations PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*02:01 B2M MHCI -4511 chip0420_491538 7.25 13.43 Chip1 T1D_1 T1D TGTGCTGTGAGTGATCGGGATGGAGGCTTCAAAACTATCTTT CAVSDRDGGFKTIF TRAV8-4*01 TRAJ9*01 39.0 2036.0 CAVSDRDGGFKTIF_ 6 3105 M1 FLU 0.73 1250 M1 74 3031 7 InfluenzaA M1 GILGFVFTL transitional T cells between effector and memory populations PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*02:01 B2M MHCI -4512 chip0420_652987 6.69 11.39 Chip1 healthy_1 healthy _ 6746 5597 M1 FLU 0.8 1250 M1 92 5505 7 InfluenzaA M1 GILGFVFTL transitional T cells between effector and memory populations PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*02:01 B2M MHCI -4513 chip0420_531758 -2.46 10.05 Chip1 T1D_1 T1D _ 6746 4702 GAD65-114-123 GAD65 0.88 5 GAD65-114-123 86 4616 3 HomoSapiens GAD65 VMNILLQYVV Naive T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*02:01 B2M MHCI -4514 chip0420_393740 8.04 13.46 Chip1 T1D_1 T1D _ 6746 2687 M1 FLU 1.0 1250 NEG 93 2594 7 InfluenzaA M1 GILGFVFTL transitional T cells between effector and memory populations PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*02:01 B2M MHCI -4515 chip0420_136482 -3.48 13.06 Chip1 T1D_1 T1D _ 6746 3653 PGT-178 PGT 0.68 1480 PGT-178 98 3555 1 HomoSapiens PGT LLAGIGTVPI Naive T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*02:01 B2M MHCI -4516 chip0420_129321 12.25 13.24 Chip1 T1D_1 T1D _ 6746 1759 EBV-BLMF1 EBV 0.6 2531 NEG 93 1666 11 EBV BLMF1 GLCTLVAML effector T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*02:01 B2M MHCI -4517 chip0420_54577 8.1 13.83 Chip1 T1D_1 T1D _ 6746 2509 M1 FLU 0.83 1250 NEG 83 2426 7 InfluenzaA M1 GILGFVFTL transitional T cells between effector and memory populations PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*02:01 B2M MHCI -4518 chip0420_883183 13.09 12.57 Chip1 T1D_1 T1D TGCAGTGCTAGAGACGGGACAGGGAATGGCTACACCTTC CSARDGTGNGYTF TRBV20-1*01 TRBJ1-2*01 19.0 860.0 _CSARDGTGNGYTF 14 1836 EBV-BLMF1 EBV 0.92 2531 NEG 89 1747 11 EBV BLMF1 GLCTLVAML effector T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*02:01 B2M MHCI -4519 chip0420_260607 12.33 10.46 Chip1 T1D_1 T1D _ 6746 2827 EBV-BLMF1 EBV 0.57 2531 NEG 87 2740 9 EBV BLMF1 GLCTLVAML effector memory T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*02:01 B2M MHCI -4520 chip0420_10957 15.01 10.78 Chip1 T1D_2 T1D TGTGCCAGCAGCTCGGGACTAGTCGCCCCCGGGGAGCTGTTTTTT CASSSGLVAPGELFF TRBV2*01 TRBJ2-2*01 15.0 698.0 _CASSSGLVAPGELFF 133 2441 EBV-BLMF1 EBV 0.57 2531 NEG 85 2356 12 EBV BLMF1 GLCTLVAML effector T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*02:01 B2M MHCI -4521 chip0420_284288 8.26 12.55 Chip1 healthy_1 healthy TGTGCAGGAGCAGCCGGGAGGAGGTGCTGACGGACTCACCTTA CAGAAGR??aGADGLTL TRAV27*01 TRAJ45*01 4.0 334.0 TGCGCCAGCAGCGCGGGACAGGGACTTCCCTACGAGCAGTACTTC CASSAGQGLPYEQYF TRBV5-1*01 TRBJ2-7*01 10.0 421.0 CAGAAGR??aGADGLTL_CASSAGQGLPYEQYF 1 2841 M1 FLU 0.93 1250 NEG 80 2761 7 InfluenzaA M1 GILGFVFTL transitional T cells between effector and memory populations PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*02:01 B2M MHCI -4522 chip0420_492470 6.28 12.38 Chip1 T1D_1 T1D _ 6746 4306 M1 FLU 0.81 1250 M1 88 4218 7 InfluenzaA M1 GILGFVFTL transitional T cells between effector and memory populations PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*02:01 B2M MHCI -4523 chip0420_155589 -3.27 12.77 Chip1 T1D_1 T1D _ 6746 3612 PGT-178 PGT 0.62 1480 PGT-178 77 3535 1 HomoSapiens PGT LLAGIGTVPI Naive T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*02:01 B2M MHCI -4524 chip0420_671444 -2.91 6.96 Chip1 healthy_2 healthy TGTGCCAGCAGCTGGGGTTACACCGGGGAGCTGTTTTTT CASSWGYTGELFF TRBV5-6*01 TRBJ2-2*01 25.0 1610.0 _CASSWGYTGELFF 1 5017 ROTA-VP3 ROTA 0.62 41 NEG 86 4931 2 RotavirusA VP3 YLLPGWKL Naive T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*02:01 B2M MHCI -4525 chip0420_537970 -2.75 11.85 Chip1 T1D_1 T1D TGTGCAAGCCTAGATGGCCAGAAGCTGCTCTTT CASLDGQKLLF TRAV12-1*01,TRAV12-3*01 TRAJ16*01 4.0 393.0 CASLDGQKLLF_ 1 3367 GAD65-141-149 GAD65 0.87 9 GAD65-141-149 79 3288 4 HomoSapiens GAD65 LLQEYNWEL Naive T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*02:01 B2M MHCI -4526 chip0420_471819 -4.03 10.65 Chip1 healthy_1 healthy TGTGCTCTCCCATACTTTGGTTCGAGGTAGCAACTATAAACTGACATTT CALPYFGS??aGSNYKLTF TRAV9-2*01 TRAJ53*01 14.0 377.0 CALPYFGS??aGSNYKLTF_ 1 4265 MART1-ALA MART1 0.7 269 NEG 91 4174 4 HomoSapiens MART1 ALAGIGILTV Naive T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*02:01 B2M MHCI -4527 chip0420_143653 6.11 9.69 Chip1 healthy_2 healthy TGTGCCAGCAGCTTAGGCCTTTCGGGAAACACCATATATTTT CASSLGLSGNTIYF TRBV13*01 TRBJ1-3*01 28.0 1272.0 _CASSLGLSGNTIYF 1 4920 CVB3-P3A CVB 0.75 77 NEG 99 4821 6 CoxsackievirusB P3A GIIYIIYKL central memory T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*02:01 B2M MHCI -4528 chip0420_815757 5.87 13.76 Chip1 healthy_1 healthy _ 6746 3673 M1 FLU 0.74 1250 M1 74 3599 7 InfluenzaA M1 GILGFVFTL transitional T cells between effector and memory populations PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*02:01 B2M MHCI -4529 chip0420_753021 15.61 10.27 Chip1 T1D_1 T1D _ 6746 2506 EBV-BRLF1 EBV 1.0 1264 EBV-BRLF1 82 2424 12 EBV BRLF1 YVLDHLIVV effector T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*02:01 B2M MHCI -4530 chip0420_708793 4.97 9.67 Chip1 T1D_1 T1D TGTGCCAGCAGCCCGGGGGACGCCCGTGGCGAGCAGTACTTC CASSPGDARGEQYF TRBV5-6*01 TRBJ2-7*01 17.0 681.0 _CASSPGDARGEQYF 12 1994 EBV-LMP1-1 EBV 0.67 237 NEG 94 1900 6 EBV LMP1 YLLEMLWRL central memory T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*02:01 B2M MHCI -4531 chip0420_463189 13.99 13.0 Chip1 T1D_1 T1D _ 6746 2143 EBV-BLMF1 EBV 0.84 2531 EBV-BLMF1 80 2063 12 EBV BLMF1 GLCTLVAML effector T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*02:01 B2M MHCI -4532 chip0420_325862 7.65 7.76 Chip1 T1D_1 T1D _ 6746 4634 EBV-LMP1-1 EBV 0.95 237 EBV-LMP1-1 96 4538 8 EBV LMP1 YLLEMLWRL effector memory T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*02:01 B2M MHCI -4533 chip0420_875053 15.12 10.72 Chip1 T1D_1 T1D TGTGCCGTGGACCCATGGAGTAACCAGTTCTATTTT CAVDPWSNQFYF TRAV39*01 TRAJ49*01 4.0 551.0 TGTGCCGTGTACCCAGGTATCCCCCCCTCCTCTTTT CAVYPGIPPSSF TRAV39*01 TRAJ49*01 3.0 67.0 0.3 TGTGCCACCCCACCGGGGCGCGACAGTCAGCCCCAGCATTTT CATPPGRDSQPQHF TRBV28*01 TRBJ1-5*01 12.0 804.0 CAVDPWSNQFYF_CATPPGRDSQPQHF 1 2147 EBV-BLMF1 EBV 1.0 2531 NEG 79 2068 12 EBV BLMF1 GLCTLVAML effector T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*02:01 B2M MHCI -4534 chip0420_482206 0.18 3.64 Chip1 T1D_1 T1D TGTGCCAGCAGTCCCCTCCTTGAGTCCGGGGAGCTGTTTTTT CASSPLLESGELFF TRBV27*01 TRBJ2-2*01 19.0 1417.0 _CASSPLLESGELFF 1 2871 HCV-K1Y HCV 0.5 15 NEG 76 2795 5 HCV POL YLVALGINAV natural killer-like T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*02:01 B2M MHCI -4535 chip0420_477397 -3.8 12.2 Chip1 healthy_1 healthy TGTGCCAGCAGCTTGGGTGGGACAGGGGTCACCGGGGAGCTGTTTTTT CASSLGGTGVTGELFF TRBV5-6*01 TRBJ2-2*01 15.0 661.0 _CASSLGGTGVTGELFF 1 3491 ZNT8-173-181 ZNT8 0.53 27 NEG 85 3406 1 HomoSapiens ZNT8 IQATVMIIV Naive T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*02:01 B2M MHCI -4536 chip0420_117066 11.27 9.01 Chip1 T1D_2 T1D _ 6746 2985 EBV-BRLF1 EBV 0.93 1264 NEG 84 2901 10 EBV BRLF1 YVLDHLIVV effector memory T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*02:01 B2M MHCI -4537 chip0420_593572 10.04 13.58 Chip1 healthy_1 healthy _ 6746 2526 EBV-BRLF1 EBV 0.92 1264 EBV-BRLF1 72 2454 11 EBV BRLF1 YVLDHLIVV effector T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*02:01 B2M MHCI -4538 chip0420_221611 -2.28 7.67 Chip1 T1D_1 T1D TGTGCCAGCAGCATCTACTACGAGCAGTACTTC CASSIYYEQYF TRBV7-2*01 TRBJ2-7*01 53.0 3541.0 _CASSIYYEQYF 1 7289 IGRP-228-236 IGRP 0.81 16 IGRP-228-236 92 7197 2 HomoSapiens IGRP LNIDLLWSV Naive T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*02:01 B2M MHCI -4539 chip0420_806903 13.42 10.16 Chip1 T1D_1 T1D TGTGCCAGCAGCAAGGGACAGCTATCGAACACCGGGGAGCTGTTTTTT CASSKGQLSNTGELFF TRBV9*01 TRBJ2-2*01 23.0 865.0 _CASSKGQLSNTGELFF 1 2217 EBV-BLMF1 EBV 0.62 2531 NEG 88 2129 12 EBV BLMF1 GLCTLVAML effector T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*02:01 B2M MHCI -4540 chip0420_280684 14.94 8.78 Chip1 T1D_1 T1D TGTGCCAGCAGCACGGGACAGCTATCGAACACCGGGGAGCTGTTTTTT CASSTGQLSNTGELFF TRBV9*01 TRBJ2-2*01 14.0 659.0 _CASSTGQLSNTGELFF 82 1780 EBV-BLMF1 EBV 0.78 2531 NEG 84 1696 12 EBV BLMF1 GLCTLVAML effector T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*02:01 B2M MHCI -4541 chip0420_212074 6.09 13.72 Chip1 T1D_1 T1D _ 6746 4272 M1 FLU 0.82 1250 M1 81 4191 7 InfluenzaA M1 GILGFVFTL transitional T cells between effector and memory populations PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*02:01 B2M MHCI -4542 chip0420_596209 11.14 9.84 Chip1 T1D_1 T1D TGCAGCGTCGGCTCCAGGGGAACTAATGAAAAACTGTTTTTT CSVGSRGTNEKLFF TRBV29-1*01 TRBJ1-4*01 75.0 3852.0 _CSVGSRGTNEKLFF 283 3615 EBV-BLMF1 EBV 1.0 2531 NEG 88 3527 9 EBV BLMF1 GLCTLVAML effector memory T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*02:01 B2M MHCI -4543 chip0420_71691 -4.3 9.52 Chip1 healthy_1 healthy _ 6746 5430 PGT-178 PGT 0.78 1480 PGT-178 81 5349 2 HomoSapiens PGT LLAGIGTVPI Naive T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*02:01 B2M MHCI -4544 chip0420_362678 10.65 10.39 Chip1 T1D_3 T1D TGCGGCACAGATACTACCTCAGGAACCTACAAATACATCTTT CGTDTTSGTYKYIF TRAV30*01 TRAJ40*01 1.0 14.0 CGTDTTSGTYKYIF_ 1 3139 BZLF1-190-197 EBV 0.8 2156 NEG 96 3043 9 EBV BZLF1 RAKFKQLL effector memory T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-B*08:01 B2M MHCI -4545 chip0420_560558 11.87 8.22 Chip1 T1D_2 T1D TGTGCCAGCAGCTCGGGACTAGTCGCCCCCGGGGAGCTGTTTTTT CASSSGLVAPGELFF TRBV2*01 TRBJ2-2*01 26.0 967.0 _CASSSGLVAPGELFF 133 3245 EBV-BLMF1 EBV 0.62 2531 NEG 80 3165 10 EBV BLMF1 GLCTLVAML effector memory T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*02:01 B2M MHCI -4546 chip0420_307432 -4.17 10.19 Chip1 healthy_2 healthy TGTGCTGTGCGGGTTTCAGGAAACACACCTCTTGTCTTT CAVRVSGNTPLVF TRAV20*01 TRAJ29*01 42.0 2252.0 CAVRVSGNTPLVF_ 1 3930 gp160-586-593 HIV 0.73 30 gp160-586-593 91 3839 2 HIV-1 gp160 YLKDQQLL Naive T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-B*08:01 B2M MHCI -4547 chip0420_819143 -3.21 8.57 Chip1 healthy_1 healthy _ 6746 5948 PGT-178 PGT 0.6 1480 PGT-178 99 5849 2 HomoSapiens PGT LLAGIGTVPI Naive T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*02:01 B2M MHCI -4548 chip0420_215163 7.6 11.56 Chip1 healthy_1 healthy TGTGCCAGCTCACCAGTCGGGACACTCTACGAGCAGTACTTC CASSPVGTLYEQYF TRBV18*01 TRBJ2-7*01 25.0 1862.0 _CASSPVGTLYEQYF 1 5237 M1 FLU 1.0 1250 NEG 85 5152 7 InfluenzaA M1 GILGFVFTL transitional T cells between effector and memory populations PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*02:01 B2M MHCI -4549 chip0420_215011 10.97 10.08 Chip1 healthy_2 healthy _ 6746 3367 BZLF1-190-197 EBV 0.76 2156 NEG 82 3285 9 EBV BZLF1 RAKFKQLL effector memory T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-B*08:01 B2M MHCI -4550 chip0420_514581 8.84 13.77 Chip1 T1D_1 T1D _ 6746 2623 M1 FLU 0.61 1250 NEG 103 2520 11 InfluenzaA M1 GILGFVFTL effector T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*02:01 B2M MHCI -4551 chip0420_423477 13.03 10.97 Chip1 T1D_1 T1D TGTGCCAGCAGCCCAGTTAGCGGGTCAACCTACGAGCAGTACTTC CASSPVSGSTYEQYF TRBV3-1*01 TRBJ2-7*01 15.0 1116.0 _CASSPVSGSTYEQYF 80 2411 EBV-BLMF1 EBV 1.0 2531 NEG 88 2323 9 EBV BLMF1 GLCTLVAML effector memory T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*02:01 B2M MHCI -4552 chip0420_402299 -4.1 8.59 Chip1 healthy_1 healthy TGTGGAGCTATAAACCTAGATGGTTCTGCAAGGCAGCTGACCTTT CGAINLDGSARQLTF TRAV34*01 TRAJ22*01 34.0 1719.0 TGTGCCTCCACGAGCGGAACCGCCAATGAGCAGTTCTTC CASTSGTANEQFF TRBV10-3*01 TRBJ2-1*01 16.0 1355.0 CGAINLDGSARQLTF_CASTSGTANEQFF 1 5323 HCVNS4B-1807-1816 HCV 0.62 74 NEG 77 5246 2 HCV NS4B LLFNILGGWV Naive T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*02:01 B2M MHCI -4553 chip0420_68504 6.41 12.85 Chip1 healthy_1 healthy _ 6746 3944 M1 FLU 0.79 1250 M1 81 3863 7 InfluenzaA M1 GILGFVFTL transitional T cells between effector and memory populations PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*02:01 B2M MHCI -4554 chip0420_475563 -2.23 7.21 Chip1 healthy_1 healthy TGTGCTGTGCTTAACGGGAACACTGCCATGCGCTTT CAVLNGNTAMRF TRAV8-6*01 TRAJ43*01 30.0 2026.0 TGTGCCGGGGCGGCAGGGGTTGGCTACGAGCAGTACTTC CAGAAGVGYEQYF TRBV19*01 TRBJ2-7*01 1.0 78.0 CAVLNGNTAMRF_CAGAAGVGYEQYF 1 5547 MART1-A28L MART1 0.69 84 MART1-A28L 81 5466 3 HomoSapiens MART1 ALGIGILTV Naive T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*02:01 B2M MHCI -4555 chip0420_279931 8.31 12.21 Chip1 healthy_1 healthy _ 6746 3643 M1 FLU 0.94 1250 M1 98 3545 7 InfluenzaA M1 GILGFVFTL transitional T cells between effector and memory populations PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*02:01 B2M MHCI -4556 chip0420_60137 5.79 13.45 Chip1 T1D_1 T1D _ 6746 5257 M1 FLU 0.88 1250 M1 66 5191 7 InfluenzaA M1 GILGFVFTL transitional T cells between effector and memory populations PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*02:01 B2M MHCI -4557 chip0420_198686 -3.79 9.75 Chip1 healthy_1 healthy TGTGCCAGCAGTTTAGCGGGAGTCGATGAGCAGTTCTTC CASSLAGVDEQFF TRBV6-2*01,TRBV6-3*01 TRBJ2-1*01 17.0 1372.0 _CASSLAGVDEQFF 1 5084 PGT-178 PGT 0.87 1480 PGT-178 73 5011 2 HomoSapiens PGT LLAGIGTVPI Naive T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*02:01 B2M MHCI -4558 chip0420_687003 11.33 11.7 Chip1 T1D_2 T1D TGTGCCTTAGGCGGACTGACCTTT CALGGLTF TRAV8-1*01 TRAJ22*01 25.0 2138.0 TGTGCCAGCAGCTTAGTAAACCAGGGGGTGAGGGGCTACACCTTC CASSLVNQGVRGYTF TRBV7-2*01 TRBJ1-2*01 3.0 39.0 CALGGLTF_CASSLVNQGVRGYTF 1 1938 EBV-BRLF1 EBV 0.94 1264 EBV-BRLF1 101 1837 9 EBV BRLF1 YVLDHLIVV effector memory T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*02:01 B2M MHCI -4559 chip0420_318229 9.95 9.28 Chip1 T1D_1 T1D TGTGCCAGCAGTGGACCCGGGGGCCTCGGGAACACTGAAGCTTTCTTT CASSGPGGLGNTEAFF TRAV14/DV4*01 TRAJ40*01 2.0 6.0 TGTGCCAGCAGTGGACCCGGGGGCCTCGGGAACACTGAAGCTTTCTTT CASSGPGGLGNTEAFF TRBV2*01 TRBJ1-1*01 48.0 2603.0 CASSGPGGLGNTEAFF_CASSGPGGLGNTEAFF 1 4817 EBV-BRLF1 EBV 1.0 1264 EBV-BRLF1 93 4724 8 EBV BRLF1 YVLDHLIVV effector memory T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*02:01 B2M MHCI -4560 chip0420_239591 7.49 11.79 Chip1 healthy_1 healthy TGTCCCCGCAGACCCGGACAGGGGGTCTCCTACGCGCAGTACTTG CPRRPGQGVSYAQYL TRBV28*01 TRBJ2-7*01 2.0 210.0 _CPRRPGQGVSYAQYL 1 4387 M1 FLU 0.57 1250 M1 89 4298 7 InfluenzaA M1 GILGFVFTL transitional T cells between effector and memory populations PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*02:01 B2M MHCI -4561 chip0420_759080 10.75 10.81 Chip1 T1D_1 T1D _ 6746 3676 EBV-BLMF1 EBV 0.93 2531 NEG 92 3584 9 EBV BLMF1 GLCTLVAML effector memory T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*02:01 B2M MHCI -4562 chip0420_548835 -3.63 12.76 Chip1 healthy_1 healthy _ 6746 3166 PGT-178 PGT 0.93 1480 NEG 69 3097 1 HomoSapiens PGT LLAGIGTVPI Naive T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*02:01 B2M MHCI -4563 chip0420_178759 12.65 10.72 Chip1 T1D_1 T1D _ 6746 2721 EBV-BLMF1 EBV 0.8 2531 EBV-BLMF1 73 2648 9 EBV BLMF1 GLCTLVAML effector memory T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*02:01 B2M MHCI -4564 chip0420_624167 13.59 8.72 Chip1 T1D_1 T1D TGTGCCAGCAGCCAAAGCCCGGGTGGTACGCAGTATTTT CASSQSPGGTQYF TRBV14*01 TRBJ2-3*01 10.0 291.0 _CASSQSPGGTQYF 94 3815 EBV-BLMF1 EBV 0.52 2531 NEG 88 3727 12 EBV BLMF1 GLCTLVAML effector T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*02:01 B2M MHCI -4565 chip0420_361796 12.97 7.42 Chip1 T1D_2 T1D _ 6746 2995 EBV-BLMF1 EBV 0.8 2531 NEG 113 2882 10 EBV BLMF1 GLCTLVAML effector memory T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*02:01 B2M MHCI -4566 chip0420_685730 6.04 12.19 Chip1 T1D_1 T1D TGTGCCAGTAGTATGCGGTCCGCCTACGAGCAGTACTTC CASSMRSAYEQYF TRBV19*01 TRBJ2-7*01 31.0 1957.0 _CASSMRSAYEQYF 6 5970 M1 FLU 0.78 1250 M1 95 5875 7 InfluenzaA M1 GILGFVFTL transitional T cells between effector and memory populations PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*02:01 B2M MHCI -4567 chip0420_568370 5.68 10.02 Chip1 T1D_1 T1D _ 6746 2865 EBV-LMP2-FLY EBV 0.57 355 EBV-LMP2-FLY 94 2771 6 EBV LMP2 FLYALALLL central memory T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*02:01 B2M MHCI -4568 chip0420_873055 8.79 8.36 Chip1 T1D_1 T1D TGTGCCACCCAACAGGGGAGGGACAGTCAGCCCCAGCATTTT CATQQGRDSQPQHF TRBV28*01 TRBJ1-5*01 14.0 656.0 _CATQQGRDSQPQHF 52 4772 EBV-BLMF1 EBV 0.54 2531 NEG 92 4680 8 EBV BLMF1 GLCTLVAML effector memory T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*02:01 B2M MHCI -4569 chip0420_636151 10.85 10.99 Chip1 T1D_1 T1D TGTGCCAGCAGACCTCTTCTGGCGGGAGGCACTGCAGCTGTCTTT CASRPLLAGGTAAVF TRBV28*01 TRBJ1-1*01 3.0 194.0 _CASRPLLAGGTAAVF 1 2871 EBV-BRLF1 EBV 0.92 1264 EBV-BRLF1 92 2779 9 EBV BRLF1 YVLDHLIVV effector memory T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*02:01 B2M MHCI -4570 chip0420_432324 11.4 12.76 Chip1 T1D_2 T1D TGCAGCGACAGAGACGGAGGAAACTATGGCTACACCTTC CSDRDGGNYGYTF TRBV29-1*01 TRBJ1-2*01 37.0 2444.0 _CSDRDGGNYGYTF 7 1988 EBV-BRLF1 EBV 0.93 1264 NEG 79 1909 11 EBV BRLF1 YVLDHLIVV effector T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*02:01 B2M MHCI -4571 chip0420_808571 13.27 10.15 Chip1 T1D_2 T1D _ 6746 3005 EBV-BLMF1 EBV 0.7 2531 NEG 92 2913 10 EBV BLMF1 GLCTLVAML effector memory T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*02:01 B2M MHCI -4572 chip0420_741723 6.01 13.1 Chip1 T1D_1 T1D _ 6746 3586 M1 FLU 0.94 1250 M1 91 3495 7 InfluenzaA M1 GILGFVFTL transitional T cells between effector and memory populations PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*02:01 B2M MHCI -4573 chip0420_435978 13.83 11.33 Chip1 T1D_1 T1D TGTGCCACCCAACAGGGGAGGGACAGTCAGCCCCAGCATTTT CATQQGRDSQPQHF TRBV28*01 TRBJ1-5*01 17.0 573.0 _CATQQGRDSQPQHF 52 2445 EBV-BLMF1 EBV 0.79 2531 NEG 95 2350 12 EBV BLMF1 GLCTLVAML effector T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*02:01 B2M MHCI -4574 chip0420_835671 10.59 13.66 Chip1 healthy_1 healthy _ 6746 1678 M1 FLU 0.89 1250 NEG 83 1595 11 InfluenzaA M1 GILGFVFTL effector T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*02:01 B2M MHCI -4575 chip0420_468916 11.95 13.78 Chip1 T1D_2 T1D TGTGCCGTGAAGGACACCGACAAGCTCATCTTT CAVKDTDKLIF TRAV8-1*01 TRAJ34*01 15.0 1196.0 CAVKDTDKLIF_ 56 1224 EBV-BRLF1 EBV 0.8 1264 NEG 85 1139 11 EBV BRLF1 YVLDHLIVV effector T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*02:01 B2M MHCI -4576 chip0420_581795 5.49 12.68 Chip1 healthy_2 healthy TGTGCCATCAGTGGGAGCTCCTACAATGAGCAGTTCTTC CAISGSSYNEQFF TRBV10-3*01 TRBJ2-1*01 4.0 270.0 _CAISGSSYNEQFF 1 4663 HCVNS3-1406-1415 HCV 0.5 12 NEG 85 4578 7 HCV NS3 KLVALGINAV transitional T cells between effector and memory populations PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*02:01 B2M MHCI -4577 chip0420_511012 10.75 11.09 Chip1 T1D_1 T1D TGTGCCAGCAGTTCCGGAGGGAACGTGGATACGCAGTATTTT CASSSGGNVDTQYF TRBV7-3*01 TRBJ2-3*01 35.0 2170.0 _CASSSGGNVDTQYF 47 3418 EBV-BLMF1 EBV 1.0 2531 NEG 94 3324 9 EBV BLMF1 GLCTLVAML effector memory T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*02:01 B2M MHCI -4578 chip0420_801450 10.37 8.03 Chip1 T1D_2 T1D _ 6746 2639 EBV-BLMF1 EBV 0.8 2531 NEG 107 2532 10 EBV BLMF1 GLCTLVAML effector memory T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*02:01 B2M MHCI -4579 chip0420_569741 7.12 11.03 Chip1 T1D_1 T1D TGTGCCAGTAGTGTCAGGGCAGGAGAGACCCAGTACTTC CASSVRAGETQYF TRBV19*01 TRBJ2-5*01 20.0 1240.0 _CASSVRAGETQYF 23 3804 M1 FLU 0.81 1250 M1 103 3701 7 InfluenzaA M1 GILGFVFTL transitional T cells between effector and memory populations PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*02:01 B2M MHCI -4580 chip0420_437214 10.97 10.46 Chip1 T1D_1 T1D _ 6746 4399 EBV-BLMF1 EBV 0.45 2531 NEG 94 4305 9 EBV BLMF1 GLCTLVAML effector memory T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*02:01 B2M MHCI -4581 chip0420_20316 -4.33 10.21 Chip1 healthy_1 healthy TGTGCAATGAGCGGGTCTAACTTTGGAAATGAGAAATTAACCTTT CAMSGSNFGNEKLTF TRAV12-3*01 TRAJ48*01 1.0 53.0 CAMSGSNFGNEKLTF_ 6 3700 PGT-178 PGT 0.65 1480 PGT-178 78 3622 2 HomoSapiens PGT LLAGIGTVPI Naive T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*02:01 B2M MHCI -4582 chip0420_788099 6.71 12.81 Chip1 healthy_1 healthy TGTGCCAGTAGTATCCGCTCCGCCTACGAGCAGTACTTC CASSIRSAYEQYF TRBV19*01 TRBJ2-7*01 12.0 758.0 _CASSIRSAYEQYF 11 4012 M1 FLU 0.68 1250 M1 82 3930 7 InfluenzaA M1 GILGFVFTL transitional T cells between effector and memory populations PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*02:01 B2M MHCI -4583 chip0420_640133 -3.37 8.53 Chip1 T1D_1 T1D TGTGCCAGCATTGGCCAGGGTGCAGATACGCAGTATTTT CASIGQGADTQYF TRBV6-1*01 TRBJ2-3*01 8.0 407.0 _CASIGQGADTQYF 1 4084 HCVNS4B-1807-1816 HCV 1.0 74 NEG 105 3979 2 HCV NS4B LLFNILGGWV Naive T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*02:01 B2M MHCI -4584 chip0420_397726 -0.71 9.22 Chip1 T1D_2 T1D _ 6746 6217 GP160-311-320 HIV 1.0 109 NEG 83 6134 3 HIV-1 GP160 RGPGRAFVTI Naive T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*02:01 B2M MHCI -4585 chip0420_808039 8.24 13.75 Chip1 T1D_1 T1D _ 6746 2473 M1 FLU 0.88 1250 M1 92 2381 7 InfluenzaA M1 GILGFVFTL transitional T cells between effector and memory populations PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*02:01 B2M MHCI -4586 chip0420_76708 -4.57 10.16 Chip1 T1D_1 T1D TGTGCCAGCAGTTTTCTGGGACTAGCGGGCGAGCAGTACTTC CASSFLGLAGEQYF TRBV12-3*01,TRBV12-4*01 TRBJ2-7*01 22.0 1497.0 _CASSFLGLAGEQYF 1 3937 MART1-ALA MART1 0.65 269 NEG 74 3863 2 HomoSapiens MART1 ALAGIGILTV Naive T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*02:01 B2M MHCI -4587 chip0420_772489 11.7 11.13 Chip1 T1D_1 T1D _ 6746 2563 EBV-BLMF1 EBV 0.56 2531 NEG 86 2477 9 EBV BLMF1 GLCTLVAML effector memory T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*02:01 B2M MHCI -4588 chip0420_147003 11.34 11.01 Chip1 T1D_2 T1D TGCAGCGTTGGCCAGGCCCTCTACAATGAGCAGTTCTTC CSVGQALYNEQFF TRBV29-1*01 TRBJ2-1*01 22.0 1389.0 _CSVGQALYNEQFF 2 2304 EBV-BRLF1 EBV 0.97 1264 EBV-BRLF1 82 2222 9 EBV BRLF1 YVLDHLIVV effector memory T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*02:01 B2M MHCI -4589 chip0420_442025 8.23 11.69 Chip1 healthy_1 healthy TGTGCTGACGACGGGGTAGTTCCGGCGACGGTGCTGCCGGACTCACCTGT CADDGVVPg?cDGAAGLTC TRAV21*01 TRAJ45*01 44.0 1836.0 TGTGCCAGCAGCTCCCCGGGACAGGGCACAGATACGCAGTATTTT CASSSPGQGTDTQYF TRBV7-9*01 TRBJ2-3*01 55.0 2185.0 CADDGVVPg?cDGAAGLTC_CASSSPGQGTDTQYF 1 2991 PGT-178 PGT 0.71 1480 PGT-178 83 2908 7 HomoSapiens PGT LLAGIGTVPI transitional T cells between effector and memory populations PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*02:01 B2M MHCI -4590 chip0420_293121 13.12 11.64 Chip1 T1D_1 T1D TGTGCTCTCTATAACACCGACAAGCTCATCTTT CALYNTDKLIF TRAV9-2*01 TRAJ34*01 27.0 2122.0 TGTGCCAGCAGCCCAGTCAGCGGGTCAACCTACGAGCAGTACTTC CASSPVSGSTYEQYF TRBV3-1*01 TRBJ2-7*01 2.0 133.0 CALYNTDKLIF_CASSPVSGSTYEQYF 15 2336 EBV-BLMF1 EBV 0.86 2531 NEG 75 2261 9 EBV BLMF1 GLCTLVAML effector memory T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*02:01 B2M MHCI -4591 chip0420_842796 11.81 9.47 Chip1 T1D_1 T1D TGCAGCGTCGGCTCCAGGGGAACTAATGAAAAACTGTTTTTT CSVGSRGTNEKLFF TRBV29-1*01 TRBJ1-4*01 98.0 4303.0 _CSVGSRGTNEKLFF 283 3258 EBV-BLMF1 EBV 0.6 2531 NEG 79 3179 10 EBV BLMF1 GLCTLVAML effector memory T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*02:01 B2M MHCI -4592 chip0420_719186 13.47 8.71 Chip1 T1D_1 T1D TGTGCCAGCAGTCCGGACCAAACTAGCTCCTACAATGAGCAGTTCTTC CASSPDQTSSYNEQFF TRBV27*01 TRBJ2-1*01 27.0 1195.0 _CASSPDQTSSYNEQFF 47 2922 EBV-BRLF1 EBV 0.91 1264 EBV-BRLF1 88 2834 10 EBV BRLF1 YVLDHLIVV effector memory T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*02:01 B2M MHCI -4593 chip0420_679483 9.41 8.44 Chip1 T1D_1 T1D _ 6746 6606 EBV-BLMF1 EBV 0.61 2531 EBV-BLMF1 92 6514 8 EBV BLMF1 GLCTLVAML effector memory T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*02:01 B2M MHCI -4594 chip0420_138552 5.25 11.18 Chip1 T1D_2 T1D TGCAGTGCTGTGACAGGGGGAGGTGGCACTGAAGCTTTCTTT CSAVTGGGGTEAFF TRBV20-1*01 TRBJ1-1*01 45.0 1401.0 _CSAVTGGGGTEAFF 4 3508 MART1-ALA MART1 0.44 269 NEG 79 3429 6 HomoSapiens MART1 ALAGIGILTV central memory T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*02:01 B2M MHCI -4595 chip0420_690722 7.24 12.88 Chip1 T1D_2 T1D _ 6746 2715 EBV-BLMF1 EBV 1.0 2531 NEG 81 2634 7 EBV BLMF1 GLCTLVAML transitional T cells between effector and memory populations PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*02:01 B2M MHCI -4596 chip0420_439871 15.32 12.36 Chip1 healthy_1 healthy TGTGCCAGTAGTATAAGAAGTTCCTACGAGCAGTACTTC CASSIRSSYEQYF TRBV19*01 TRBJ2-7*01 23.0 1500.0 _CASSIRSSYEQYF 36 2319 M1 FLU 0.74 1250 M1 77 2242 12 InfluenzaA M1 GILGFVFTL effector T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*02:01 B2M MHCI -4597 chip0420_316236 6.18 13.02 Chip1 healthy_2 healthy _ 6746 4002 M1 FLU 0.74 1250 NEG 80 3922 7 InfluenzaA M1 GILGFVFTL transitional T cells between effector and memory populations PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*02:01 B2M MHCI -4598 chip0420_310084 -3.52 10.83 Chip1 healthy_1 healthy TGCATCGTCTTTCAGGACGACTACAAGCTCAGCTTT CIVFQDDYKLSF TRAV26-1*01 TRAJ20*01 27.0 2118.0 TGCAGCGTCCTGAACTACGAGCAGTACTTC CSVLNYEQYF TRBV29-1*01 TRBJ2-7*01 32.0 2632.0 CIVFQDDYKLSF_CSVLNYEQYF 1 4626 GP160-311-320 HIV 0.61 109 GP160-311-320 76 4550 4 HIV-1 GP160 RGPGRAFVTI Naive T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*02:01 B2M MHCI -4599 chip0420_178124 6.91 13.33 Chip1 T1D_1 T1D _ 6746 3641 M1 FLU 0.45 1250 M1 73 3568 7 InfluenzaA M1 GILGFVFTL transitional T cells between effector and memory populations PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*02:01 B2M MHCI -4600 chip0420_622934 -3.76 9.57 Chip1 T1D_1 T1D TGTGCTGTGGGTGCCTGGGGGGGTTCAGGAGGAGGTGCTGACGGACTCACCTTT CAVGAWGGSGGGADGLTF TRAV8-3*01 TRAJ45*01 67.0 1932.0 CAVGAWGGSGGGADGLTF_ 1 4887 IGRP-152-160-WLI IGRP 0.57 27 IGRP-152-160-WLI 73 4814 2 HomoSapiens IGRP FLWSVFWLI Naive T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*02:01 B2M MHCI -4601 chip0420_73049 7.53 11.8 Chip1 healthy_1 healthy TGTGCCAGCATTAGCTTGGACCCCTTGTACTTC CASISLDPLYF TRBV2*01 TRBJ2-5*01 10.0 1307.0 _CASISLDPLYF 3 4264 M1 FLU 0.83 1250 M1 87 4177 7 InfluenzaA M1 GILGFVFTL transitional T cells between effector and memory populations PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*02:01 B2M MHCI -4602 chip0420_531488 -3.28 12.32 Chip1 T1D_3 T1D _ 6746 3354 NP140-148 FLU 0.46 102 NEG 87 3267 1 InfluenzaA NP HSNLNDATY Naive T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*01:01 B2M MHCI -4603 chip0420_182710 -3.47 10.87 Chip1 T1D_1 T1D TGTGCCAGCAGTTATTCCTTACAGGGTAACGAGCAGTACTTC CASSYSLQGNEQYF TRBV6-5*01 TRBJ2-7*01 24.0 1502.0 _CASSYSLQGNEQYF 1 4115 PGT-178 PGT 0.71 1480 PGT-178 81 4034 2 HomoSapiens PGT LLAGIGTVPI Naive T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*02:01 B2M MHCI -4604 chip0420_528694 9.56 10.43 Chip1 T1D_2 T1D TGCGCCAGCAGCTTGGAGGGTCAGGCCAGCTCCTACGAGCAGTACTTC CASSLEGQASSYEQYF TRBV5-1*01 TRBJ2-7*01 49.0 3075.0 _CASSLEGQASSYEQYF 9 4451 EBV-LMP2A EBV 0.96 700 EBV-LMP2A 90 4361 9 EBV LMP2A CLGGLLTMV effector memory T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*02:01 B2M MHCI -4605 chip0420_43516 6.16 11.7 Chip1 healthy_1 healthy _ 6746 7508 M1 FLU 0.85 1250 M1 85 7423 7 InfluenzaA M1 GILGFVFTL transitional T cells between effector and memory populations PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*02:01 B2M MHCI -4606 chip0420_172126 13.17 13.17 Chip1 T1D_1 T1D TGTGCCAGCAGCACGGGACAGCTATCGAACACCGGGGAGCTGTTTTTT CASSTGQLSNTGELFF TRAV3*01 TRAJ4*01 1.0 12.0 TGTGCCAGCAGCACGGGACAGCTATCGAACACCGGGGAGCTGTTTTTT CASSTGQLSNTGELFF TRBV9*01 TRBJ2-2*01 46.0 1984.0 CASSTGQLSNTGELFF_CASSTGQLSNTGELFF 2 1748 EBV-BLMF1 EBV 1.0 2531 NEG 84 1664 10 EBV BLMF1 GLCTLVAML effector memory T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*02:01 B2M MHCI -4607 chip0420_145641 11.31 9.3 Chip1 T1D_3 T1D _ 6746 2814 BZLF1-190-197 EBV 0.78 2156 NEG 82 2732 9 EBV BZLF1 RAKFKQLL effector memory T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-B*08:01 B2M MHCI -4608 chip0420_592141 15.43 9.43 Chip1 T1D_1 T1D TGTGCCAGCAGTTCGGGACAGGTACTTCCCAATGAGCAGTTCTTC CASSSGQVLPNEQFF TRBV2*01 TRBJ2-1*01 19.0 678.0 _CASSSGQVLPNEQFF 61 3023 EBV-BLMF1 EBV 0.47 2531 NEG 83 2940 12 EBV BLMF1 GLCTLVAML effector T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*02:01 B2M MHCI -4609 chip0420_533888 -4.82 9.31 Chip1 healthy_1 healthy _ 6746 4602 MART1-A28L MART1 0.61 84 NEG 79 4523 2 HomoSapiens MART1 ALGIGILTV Naive T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*02:01 B2M MHCI -4610 chip0420_759316 11.82 12.87 Chip1 T1D_1 T1D TGCAGCGTCGGCTCCAGGGGAACTAATGAAAAACTGTTTTTT CSVGSRGTNEKLFF TRBV29-1*01 TRBJ1-4*01 31.0 2088.0 _CSVGSRGTNEKLFF 283 2344 EBV-BLMF1 EBV 0.56 2531 NEG 81 2263 11 EBV BLMF1 GLCTLVAML effector T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*02:01 B2M MHCI -4611 chip0420_478319 6.0 13.85 Chip1 T1D_1 T1D _ 6746 4325 M1 FLU 0.71 1250 NEG 96 4229 7 InfluenzaA M1 GILGFVFTL transitional T cells between effector and memory populations PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*02:01 B2M MHCI -4612 chip0420_398660 7.74 13.31 Chip1 healthy_1 healthy TGTGTAGCAAGTAAGGGCAACCTCCTACGACAAGGTGATCCCG CVASKGN??cSYDKVIP TRAV13-1*01 TRAJ50*01 2.0 264.0 TGCAGCGTGGGGACAGGGGGAACTAATGAAAAACTGTTTTTT CSVGTGGTNEKLFF TRBV29-1*01 TRBJ1-4*01 1.0 34.0 CVASKGN??cSYDKVIP_CSVGTGGTNEKLFF 1 3147 M1 FLU 0.8 1250 NEG 103 3044 7 InfluenzaA M1 GILGFVFTL transitional T cells between effector and memory populations PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*02:01 B2M MHCI -4613 chip0420_321231 14.85 12.92 Chip1 T1D_1 T1D _ 6746 1591 EBV-BRLF1 EBV 0.97 1264 EBV-BRLF1 91 1500 12 EBV BRLF1 YVLDHLIVV effector T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*02:01 B2M MHCI -4614 chip0420_842076 6.82 12.52 Chip1 T1D_1 T1D _ 6746 4184 M1 FLU 0.96 1250 M1 83 4101 7 InfluenzaA M1 GILGFVFTL transitional T cells between effector and memory populations PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*02:01 B2M MHCI -4615 chip0420_445954 11.41 10.95 Chip1 T1D_1 T1D TGCGGCACAGAGGAACCTAACGACTACAAGCTCAGCTTT CGTEEPNDYKLSF TRAV30*01 TRAJ20*01 22.0 2054.0 TGTGCCAGCAACACGGGACAGCTATCAAACACCGGGGAGCTGTTTTTT CASNTGQLSNTGELFF TRBV9*01 TRBJ2-2*01 11.0 404.0 CGTEEPNDYKLSF_CASNTGQLSNTGELFF 1 3103 EBV-BLMF1 EBV 0.5 2531 NEG 85 3018 9 EBV BLMF1 GLCTLVAML effector memory T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*02:01 B2M MHCI -4616 chip0420_370880 -4.08 9.62 Chip1 T1D_1 T1D _ 6746 3819 MART1-ALA MART1 0.5 269 NEG 78 3741 2 HomoSapiens MART1 ALAGIGILTV Naive T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*02:01 B2M MHCI -4617 chip0420_223210 -2.77 7.55 Chip1 healthy_1 healthy TGTGCCGTGGATGGAGGAAGCCAAGGTCGTCTCATCTTT CAVDGGSQGRLIF TRAV12-2*01 TRAJ42*01 40.0 2599.0 TGTGCCAGCAGTCGTAGCGGTACGACCTACGAGCAGTACTTC CASSRSGTTYEQYF TRBV28*01 TRBJ2-7*01 12.0 926.0 CAVDGGSQGRLIF_CASSRSGTTYEQYF 1 6262 MART1-A28L MART1 0.96 84 MART1-A28L 94 6168 2 HomoSapiens MART1 ALGIGILTV Naive T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*02:01 B2M MHCI -4618 chip0420_496945 15.13 12.27 Chip1 T1D_1 T1D TGTGCCAGCAGCCCCGACTACCCCGGGACCGCAGCCTCCTACGAGCAGTACTTC CASSPDYPGTAASYEQYF TRBV9*01 TRBJ2-7*01 22.0 1169.0 _CASSPDYPGTAASYEQYF 1 1520 EBV-BRLF1 EBV 0.89 1264 EBV-BRLF1 92 1428 12 EBV BRLF1 YVLDHLIVV effector T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*02:01 B2M MHCI -4619 chip0420_720386 13.85 10.21 Chip1 T1D_1 T1D _ 6746 3400 EBV-BLMF1 EBV 0.5 2531 NEG 83 3317 12 EBV BLMF1 GLCTLVAML effector T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*02:01 B2M MHCI -4620 chip0420_573854 5.52 8.58 Chip1 T1D_2 T1D _ 6746 5931 EBV-LMP2-FLY EBV 1.0 355 EBV-LMP2-FLY 86 5845 6 EBV LMP2 FLYALALLL central memory T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*02:01 B2M MHCI -4621 chip0420_657940 -2.79 10.01 Chip1 T1D_1 T1D TGTGCCGTTTCTGGGGGTTACCAGAAAGTTACCTTT CAVSGGYQKVTF TRAV12-2*01 TRAJ13*01 13.0 866.0 TGTGCCAGCAGTGAGTCGATCAGGGTCCAAGAGACCCAGTACTTC CASSESIRVQETQYF TRBV2*01 TRBJ2-5*01 1.0 61.0 CAVSGGYQKVTF_CASSESIRVQETQYF 1 4611 PGT-178 PGT 0.43 1480 NEG 84 4527 2 HomoSapiens PGT LLAGIGTVPI Naive T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*02:01 B2M MHCI -4622 chip0420_238842 12.65 8.72 Chip1 T1D_1 T1D _ 6746 2400 EBV-LMP2-FLY EBV 0.88 355 EBV-LMP2-FLY 87 2313 10 EBV LMP2 FLYALALLL effector memory T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*02:01 B2M MHCI -4623 chip0420_871411 -3.15 11.58 Chip1 T1D_1 T1D TGTGCCAGCAACGGGTGGGGGGACTACGAGCAGTACTTC CASNGWGDYEQYF TRBV7-9*01 TRBJ2-7*01 31.0 1838.0 _CASNGWGDYEQYF 1 5082 HCVNS4B-1807-1816 HCV 0.67 74 NEG 75 5007 1 HCV NS4B LLFNILGGWV Naive T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*02:01 B2M MHCI -4624 chip0420_671775 5.72 12.2 Chip1 T1D_1 T1D _ 6746 4554 M1 FLU 0.93 1250 M1 85 4469 7 InfluenzaA M1 GILGFVFTL transitional T cells between effector and memory populations PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*02:01 B2M MHCI -4625 chip0420_669822 -1.14 8.86 Chip1 healthy_1 healthy _ 6746 5723 GP160-311-320 HIV 0.57 109 NEG 86 5637 4 HIV-1 GP160 RGPGRAFVTI Naive T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*02:01 B2M MHCI -4626 chip0420_390580 -2.63 14.29 Chip1 T1D_1 T1D CGTGCAATGACCTCCTCTACCTTTGGCCCTGCGCCCTTCCCCTTT RAMTSSTFGPAPFPF TRAV12-3*01 TRAJ48*01 33.0 2012.0 RAMTSSTFGPAPFPF_ 1 2768 PGT-178 PGT 0.59 1480 PGT-178 94 2674 1 HomoSapiens PGT LLAGIGTVPI Naive T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*02:01 B2M MHCI -4627 chip0420_370936 9.77 10.62 Chip1 T1D_1 T1D _ 6746 2674 EBV-BLMF1 EBV 0.89 2531 NEG 95 2579 9 EBV BLMF1 GLCTLVAML effector memory T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*02:01 B2M MHCI -4628 chip0420_87024 9.63 9.66 Chip1 T1D_1 T1D TGTGCCAGTAGGGCCTTGTTGGGATCCAATCAGCCCCAGCATTTT CASRALLGSNQPQHF TRBV19*01 TRBJ1-5*01 59.0 2622.0 _CASRALLGSNQPQHF 8 5018 EBV-BRLF1 EBV 0.79 1264 EBV-BRLF1 87 4931 9 EBV BRLF1 YVLDHLIVV effector memory T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*02:01 B2M MHCI -4629 chip0420_823979 6.5 13.83 Chip1 healthy_2 healthy TGTGCCGCGAGAGGAAGCCAAGGAAATCTCATCTTT CAARGSQGNLIF TRAV38-1*01 TRAJ42*01 5.0 454.0 CAARGSQGNLIF_ 1 3730 M1 FLU 0.57 1250 M1 91 3639 7 InfluenzaA M1 GILGFVFTL transitional T cells between effector and memory populations PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*02:01 B2M MHCI -4630 chip0420_367900 10.89 12.06 Chip1 T1D_1 T1D _ 6746 3224 EBV-BRLF1 EBV 0.95 1264 EBV-BRLF1 82 3142 11 EBV BRLF1 YVLDHLIVV effector T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*02:01 B2M MHCI -4631 chip0420_365620 16.09 10.01 Chip1 T1D_2 T1D TGCAGCGTGGGGACAGGGGGAACTAATGAAAAACTGTTTTTT CSVGTGGTNEKLFF TRBV29-1*01 TRBJ1-4*01 107.0 4944.0 _CSVGTGGTNEKLFF 638 2046 EBV-BLMF1 EBV 1.0 2531 NEG 85 1961 12 EBV BLMF1 GLCTLVAML effector T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*02:01 B2M MHCI -4632 chip0420_719949 12.16 7.69 Chip1 T1D_2 T1D _ 6746 3304 EBV-BLMF1 EBV 0.62 2531 NEG 94 3210 10 EBV BLMF1 GLCTLVAML effector memory T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*02:01 B2M MHCI -4633 chip0420_390193 -2.93 9.6 Chip1 T1D_1 T1D TGTGCCAGCAGTGGTCTGGCGGGCGGGAACACTGAAGCTTTCTTT CASSGLAGGNTEAFF TRBV2*01 TRBJ1-1*01 31.0 1976.0 _CASSGLAGGNTEAFF 1 4071 PGT-178 PGT 0.73 1480 PGT-178 83 3988 2 HomoSapiens PGT LLAGIGTVPI Naive T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*02:01 B2M MHCI -4634 chip0420_373497 12.3 10.12 Chip1 T1D_1 T1D _ 6746 3529 EBV-BRLF1 EBV 0.62 1264 NEG 86 3443 9 EBV BRLF1 YVLDHLIVV effector memory T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*02:01 B2M MHCI -4635 chip0420_835556 5.04 11.8 Chip1 T1D_2 T1D TGTGCCAGCAGCGACAGGGGTTCTTCCTTTTACGAGCAGTACTTC CASSDRGSSFYEQYF TRBV13*01 TRBJ2-7*01 19.0 1126.0 _CASSDRGSSFYEQYF 1 3074 GP160-311-320 HIV 0.72 109 NEG 92 2982 6 HIV-1 GP160 RGPGRAFVTI central memory T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*02:01 B2M MHCI -4636 chip0420_311813 -3.59 10.83 Chip1 T1D_2 T1D _ 6746 4776 ROTA-VP3 ROTA 0.96 41 ROTA-VP3 96 4680 2 RotavirusA VP3 YLLPGWKL Naive T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*02:01 B2M MHCI -4637 chip0420_81649 -1.19 7.02 Chip1 healthy_1 healthy TGTGCTGTGTTGCAGGAGCCCAGAAGCTGGTATTT CAVLQga?AQKLVF TRAV8-6*01 TRAJ54*01 4.0 268.0 TGCAGTGCTGGGGCCGATGAGGACTATGGCTACACCTTC CSAGADEDYGYTF TRBV20-1*01 TRBJ1-2*01 53.0 2355.0 CAVLQga?AQKLVF_CSAGADEDYGYTF 1 5957 IGRP-265-273 IGRP 0.65 34 IGRP-265-273 71 5886 3 HomoSapiens IGRP VLFGLGFAI Naive T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*02:01 B2M MHCI -4638 chip0420_674703 11.26 12.92 Chip1 T1D_1 T1D _ 6746 1870 EBV-BLMF1 EBV 0.6 2531 NEG 76 1794 11 EBV BLMF1 GLCTLVAML effector T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*02:01 B2M MHCI -4639 chip0420_319411 8.44 13.75 Chip1 T1D_1 T1D _ 6746 2823 M1 FLU 0.94 1250 M1 87 2736 7 InfluenzaA M1 GILGFVFTL transitional T cells between effector and memory populations PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*02:01 B2M MHCI -4640 chip0420_50279 -2.59 13.51 Chip1 healthy_1 healthy _ 6746 3004 PGT-178 PGT 0.87 1480 PGT-178 82 2922 1 HomoSapiens PGT LLAGIGTVPI Naive T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*02:01 B2M MHCI -4641 chip0420_526293 6.44 10.23 Chip1 T1D_1 T1D TGTGCTACGGAAGGGGATTCAGGATACAGCACCCTCACCTTT CATEGDSGYSTLTF TRAV17*01 TRAJ11*01 1.0 31.0 CATEGDSGYSTLTF_ 12 5863 EBV-LMP2-FLY EBV 0.82 355 EBV-LMP2-FLY 81 5782 6 EBV LMP2 FLYALALLL central memory T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*02:01 B2M MHCI -4642 chip0420_483513 6.13 10.38 Chip1 T1D_2 T1D TGTGCTACGGAGGGGAATTCAGGATACAGCACCCTCACCTTT CATEGNSGYSTLTF TRAV17*01 TRAJ11*01 8.0 522.0 TGTGCCAGCAGTCTTCTCGGGACAGGTCTCAACGAGCAGTACTTC CASSLLGTGLNEQYF TRBV28*01 TRBJ2-7*01 6.0 282.0 CATEGNSGYSTLTF_CASSLLGTGLNEQYF 1 5501 EBV-LMP2-FLY EBV 1.0 355 EBV-LMP2-FLY 94 5407 6 EBV LMP2 FLYALALLL central memory T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*02:01 B2M MHCI -4643 chip0420_212875 12.9 12.6 Chip1 T1D_1 T1D TGTGCCAGCAGCACGGGACAGCTATCGAACACCGGGGAGCTGTTTTTT CASSTGQLSNTGELFF TRBV9*01 TRBJ2-2*01 22.0 1509.0 _CASSTGQLSNTGELFF 82 2119 EBV-BLMF1 EBV 0.6 2531 NEG 82 2037 11 EBV BLMF1 GLCTLVAML effector T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*02:01 B2M MHCI -4644 chip0420_282530 15.23 10.69 Chip1 T1D_1 T1D _ 6746 2693 EBV-BRLF1 EBV 0.9 1264 NEG 91 2602 12 EBV BRLF1 YVLDHLIVV effector T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*02:01 B2M MHCI -4645 chip0420_272678 14.41 10.27 Chip1 T1D_3 T1D _ 6746 2467 BZLF1-190-197 EBV 0.77 2156 NEG 80 2387 12 EBV BZLF1 RAKFKQLL effector T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-B*08:01 B2M MHCI -4646 chip0420_721149 -0.9 9.55 Chip1 T1D_2 T1D TGTGCCAGCAGCCAGGGTTGGTCCTACGAGCAGTACTTC CASSQGWSYEQYF TRBV14*01 TRBJ2-7*01 7.0 597.0 _CASSQGWSYEQYF 1 4146 ZNT8-173-181 ZNT8 0.48 27 ZNT8-173-181 91 4055 4 HomoSapiens ZNT8 IQATVMIIV Naive T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*02:01 B2M MHCI -4647 chip0420_522110 8.6 13.95 Chip1 healthy_1 healthy _ 6746 2553 M1 FLU 0.9 1250 NEG 94 2459 11 InfluenzaA M1 GILGFVFTL effector T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*02:01 B2M MHCI -4648 chip0420_353029 -2.26 9.46 Chip1 healthy_1 healthy TGTGCCAGCCGTTCGACAGCGTTGGGCAATGAGCAGTTCTTC CASRSTALGNEQFF TRBV27*01 TRBJ2-1*01 21.0 1376.0 _CASRSTALGNEQFF 1 5018 MART1-ALA MART1 0.76 269 NEG 85 4933 3 HomoSapiens MART1 ALAGIGILTV Naive T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*02:01 B2M MHCI -4649 chip0420_47986 13.27 11.31 Chip1 T1D_1 T1D _ 6746 2138 EBV-BLMF1 EBV 0.82 2531 NEG 74 2064 9 EBV BLMF1 GLCTLVAML effector memory T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*02:01 B2M MHCI -4650 chip0420_698703 11.5 12.49 Chip1 T1D_1 T1D TGTGCAGAGAGTGTACCGGCACTGCCAGTAAACTCACCTTT CAESVPgc?TASKLTF TRAV5*01 TRAJ44*01 1.0 48.0 CAESVPgc?TASKLTF_ 1 1814 EBV-BRLF1 EBV 1.0 1264 NEG 80 1734 11 EBV BRLF1 YVLDHLIVV effector T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*02:01 B2M MHCI -4651 chip0420_406112 11.13 10.88 Chip1 T1D_1 T1D TGTGCCAGTAACGAGGGGTGGAACACTGAAGCTTTCTTT CASNEGWNTEAFF TRBV19*01 TRBJ1-1*01 4.0 204.0 _CASNEGWNTEAFF 2 4198 EBV-BRLF1 EBV 0.68 1264 NEG 92 4106 9 EBV BRLF1 YVLDHLIVV effector memory T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*02:01 B2M MHCI -4652 chip0420_469910 6.5 12.66 Chip1 healthy_1 healthy _ 6746 4193 M1 FLU 0.65 1250 M1 87 4106 7 InfluenzaA M1 GILGFVFTL transitional T cells between effector and memory populations PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*02:01 B2M MHCI -4653 chip0420_780088 -4.32 9.06 Chip1 T1D_1 T1D TGTGCCAGTAGTATGTCCATTGGGGCCAACGTCCTGACTTTC CASSMSIGANVLTF TRBV19*01 TRBJ2-6*01 38.0 1985.0 _CASSMSIGANVLTF 1 4507 PGT-178 PGT 0.98 1480 PGT-178 77 4430 2 HomoSapiens PGT LLAGIGTVPI Naive T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*02:01 B2M MHCI -4654 chip0420_472519 6.91 13.8 Chip1 T1D_1 T1D TGTGCCAGTAGTATTGAGTCTGGTGAGCAGTTCTTC CASSIESGEQFF TRBV19*01 TRBJ2-1*01 12.0 1075.0 _CASSIESGEQFF 1 3165 M1 FLU 0.84 1250 M1 81 3084 7 InfluenzaA M1 GILGFVFTL transitional T cells between effector and memory populations PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*02:01 B2M MHCI -4655 chip0420_490422 8.86 13.98 Chip1 healthy_2 healthy _ 6746 2038 M1 FLU 0.71 1250 NEG 95 1943 11 InfluenzaA M1 GILGFVFTL effector T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*02:01 B2M MHCI -4656 chip0420_323975 10.97 11.94 Chip1 T1D_1 T1D TGTGCCACCCAACAGGGGAGGGACAGTCAGCCCCAGCATTTT CATQQGRDSQPQHF TRBV28*01 TRBJ1-5*01 15.0 555.0 _CATQQGRDSQPQHF 52 3012 EBV-BLMF1 EBV 0.71 2531 NEG 96 2916 9 EBV BLMF1 GLCTLVAML effector memory T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*02:01 B2M MHCI -4657 chip0420_771180 -4.7 9.86 Chip1 healthy_1 healthy TGTGCCTTAGATAACTATGGTCAGAATTTTGTCTTT CALDNYGQNFVF TRAV38-1*01 TRAJ26*01 4.0 284.0 CALDNYGQNFVF_ 1 4798 GP160-311-320 HIV 0.96 109 GP160-311-320 77 4721 2 HIV-1 GP160 RGPGRAFVTI Naive T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*02:01 B2M MHCI -4658 chip0420_551597 -4.67 9.52 Chip1 healthy_1 healthy TGTGCCAGCAGGGGGACTAGCGGGAGTTATGACACCGGGGAGCTGTTTTTT CASRGTSGSYDTGELFF TRBV28*01 TRBJ2-2*01 52.0 2322.0 _CASRGTSGSYDTGELFF 1 4887 PGT-178 PGT 0.75 1480 PGT-178 83 4804 2 HomoSapiens PGT LLAGIGTVPI Naive T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*02:01 B2M MHCI -4659 chip0420_44538 6.45 10.08 Chip1 T1D_1 T1D _ 6746 7083 EBV-LMP2-FLY EBV 0.95 355 EBV-LMP2-FLY 77 7006 6 EBV LMP2 FLYALALLL central memory T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*02:01 B2M MHCI -4660 chip0420_810847 -3.87 9.66 Chip1 healthy_1 healthy TGTGCCAGCAGCGTAGGTGACAGGGGAAAGCGAGAGGGCCCGGAATGAGCAGTTCTTA CASSVGDRGaa??gcERARNEQFL TRBV9*01 TRBJ2-1*01 4.0 188.0 _CASSVGDRGaa??gcERARNEQFL 1 6005 PGT-178 PGT 0.83 1480 PGT-178 73 5932 2 HomoSapiens PGT LLAGIGTVPI Naive T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*02:01 B2M MHCI -4661 chip0420_875440 10.24 11.04 Chip1 T1D_2 T1D TGTGCCCTGCCGGACCAGGCAGGCACTGCTCTGATTTTT CALPDQAGTALIF TRAV8-1*01 TRAJ15*01 13.0 617.0 TGTGCCAGCAGTCCCTCGGTATTAGCGCTAAACACCGGGGAGCTGTTTTTT CASSPSVLALNTGELFF TRBV6-1*01 TRBJ2-2*01 63.0 1835.0 CALPDQAGTALIF_CASSPSVLALNTGELFF 1 3794 EBV-BRLF1 EBV 1.0 1264 NEG 85 3709 9 EBV BRLF1 YVLDHLIVV effector memory T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*02:01 B2M MHCI -4662 chip0420_464063 -4.19 11.05 Chip1 healthy_1 healthy TGTGCCAGCAGCTTAGAGTCGGGGGAGCAGTACTTC CASSLESGEQYF TRBV13*01 TRBJ2-7*01 22.0 1166.0 _CASSLESGEQYF 1 3960 ROTA-VP3 ROTA 0.67 41 NEG 62 3898 2 RotavirusA VP3 YLLPGWKL Naive T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*02:01 B2M MHCI -4663 chip0420_515597 11.0 12.66 Chip1 healthy_1 healthy TGTGCACTCAGGTGGGACAACAATGCAGGCAAATCAACCTTT CALRWDNNAGKSTF TRAV13-1*01 TRAJ27*01 39.0 2133.0 CALRWDNNAGKSTF_ 1 2492 EBV-BRLF1 EBV 0.79 1264 EBV-BRLF1 76 2416 11 EBV BRLF1 YVLDHLIVV effector T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*02:01 B2M MHCI -4664 chip0420_154873 6.39 12.76 Chip1 T1D_1 T1D TGTGCCAGTAGTGTCAGGTCCCAAGAGACCCAGTACTTC CASSVRSQETQYF TRBV19*01 TRBJ2-5*01 9.0 245.0 _CASSVRSQETQYF 1 4793 M1 FLU 0.68 1250 M1 74 4719 7 InfluenzaA M1 GILGFVFTL transitional T cells between effector and memory populations PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*02:01 B2M MHCI -4665 chip0420_832037 -2.33 12.54 Chip1 healthy_1 healthy _ 6746 4152 PGT-178 PGT 0.69 1480 PGT-178 79 4073 4 HomoSapiens PGT LLAGIGTVPI Naive T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*02:01 B2M MHCI -4666 chip0420_553387 -3.64 11.64 Chip1 healthy_1 healthy TGTGCCAGCGAGGGGGCGCGTGAAACAAAGACCCAGTACTTC CASEGARETKTQYF TRBV2*01 TRBJ2-5*01 33.0 2031.0 _CASEGARETKTQYF 1 3877 VPR-59-67 HIV 0.81 16 VPR-59-67 73 3804 1 HIV-1 VPR AIIRILQQL Naive T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*02:01 B2M MHCI -4667 chip0420_180070 10.84 12.06 Chip1 T1D_1 T1D TGTGCCAGCAGCCCAGTTAGCGGGTCAACCTACGAGCAGTACTTC CASSPVSGSTYEQYF TRBV3-1*01 TRBJ2-7*01 27.0 1824.0 _CASSPVSGSTYEQYF 80 2896 EBV-BLMF1 EBV 0.93 2531 NEG 93 2803 9 EBV BLMF1 GLCTLVAML effector memory T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*02:01 B2M MHCI -4668 chip0420_881961 8.96 13.98 Chip1 healthy_1 healthy TGTGCTGGAGGTGGGCATGGAGGAAGCCAAGGAAATCTCATCTTT CAGGGHGGSQGNLIF TRAV27*01 TRAJ42*01 60.0 1962.0 CAGGGHGGSQGNLIF_ 1 1838 M1 FLU 1.0 1250 NEG 76 1762 11 InfluenzaA M1 GILGFVFTL effector T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*02:01 B2M MHCI -4669 chip0420_633323 11.01 11.93 Chip1 T1D_1 T1D _ 6746 2473 EBV-BLMF1 EBV 0.79 2531 NEG 87 2386 9 EBV BLMF1 GLCTLVAML effector memory T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*02:01 B2M MHCI -4670 chip0420_253670 -3.54 8.29 Chip1 T1D_1 T1D _ 6746 5436 INSDRIP-1-9 INS 0.51 8 INSDRIP-1-9 75 5361 2 HomoSapiens INSDRIP MLYQHLLPL Naive T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*02:01 B2M MHCI -4671 chip0420_220471 6.72 12.6 Chip1 healthy_1 healthy _ 6746 4311 M1 FLU 0.6 1250 NEG 73 4238 7 InfluenzaA M1 GILGFVFTL transitional T cells between effector and memory populations PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*02:01 B2M MHCI -4672 chip0420_14218 -4.33 10.33 Chip1 healthy_1 healthy _ 6746 4174 MART1-ALA MART1 0.67 269 NEG 77 4097 2 HomoSapiens MART1 ALAGIGILTV Naive T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*02:01 B2M MHCI -4673 chip0420_447477 -1.77 8.21 Chip1 T1D_1 T1D TGCGCCAGCAGTGAGTCGGACCCCGGGAGGGGAGGAAATCAGCCCCAGCATTTT CASSESDPGRGGNQPQHF TRBV10-2*01 TRBJ1-5*01 13.0 348.0 _CASSESDPGRGGNQPQHF 1 6342 PGT-178 PGT 0.84 1480 PGT-178 88 6254 3 HomoSapiens PGT LLAGIGTVPI Naive T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*02:01 B2M MHCI -4674 chip0420_93026 6.34 9.98 Chip1 T1D_2 T1D TGTGCCAGCAGTCAGCTTGGGGGATCCTATGGCTACACCTTC CASSQLGGSYGYTF TRBV6-1*01 TRBJ1-2*01 21.0 828.0 _CASSQLGGSYGYTF 1 4819 EBV-LMP2-FLY EBV 1.0 355 NEG 99 4720 6 EBV LMP2 FLYALALLL central memory T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*02:01 B2M MHCI -4675 chip0420_415864 -2.7 13.86 Chip1 T1D_1 T1D _ 6746 2600 PGT-178 PGT 0.67 1480 PGT-178 67 2533 1 HomoSapiens PGT LLAGIGTVPI Naive T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*02:01 B2M MHCI -4676 chip0420_298750 5.49 9.46 Chip1 healthy_1 healthy _ 6746 4734 EBV-LMP2-FLY EBV 0.85 355 EBV-LMP2-FLY 83 4651 6 EBV LMP2 FLYALALLL central memory T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*02:01 B2M MHCI -4677 chip0420_763800 7.74 12.59 Chip1 T1D_1 T1D TGCAGCGTCGGCTCCAGGGGAACTAATGAAAAACTGTTTTTT CSVGSRGTNEKLFF TRBV29-1*01 TRBJ1-4*01 33.0 1672.0 _CSVGSRGTNEKLFF 283 3414 EBV-BLMF1 EBV 0.57 2531 NEG 81 3333 7 EBV BLMF1 GLCTLVAML transitional T cells between effector and memory populations PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*02:01 B2M MHCI -4678 chip0420_715069 11.99 10.74 Chip1 T1D_1 T1D _ 6746 3079 EBV-BLMF1 EBV 0.88 2531 EBV-BLMF1 73 3006 9 EBV BLMF1 GLCTLVAML effector memory T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*02:01 B2M MHCI -4679 chip0420_682196 6.39 13.54 Chip1 healthy_1 healthy TGTGCCAGTAGTATAAGAAGTTCCTACGAGCAGTACTTC CASSIRSSYEQYF TRBV19*01 TRBJ2-7*01 12.0 555.0 _CASSIRSSYEQYF 36 3538 M1 FLU 0.59 1250 M1 69 3469 7 InfluenzaA M1 GILGFVFTL transitional T cells between effector and memory populations PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*02:01 B2M MHCI -4680 chip0420_90186 -3.58 11.95 Chip1 T1D_1 T1D TGCGCCAGCAGTGACCGGGACAGGGGGCTTTCCGCGCAGTACTTC CASSDRDRGLSAQYF TRBV10-2*01 TRBJ2-7*01 14.0 1056.0 _CASSDRDRGLSAQYF 1 4850 PGT-178 PGT 0.92 1480 PGT-178 77 4773 1 HomoSapiens PGT LLAGIGTVPI Naive T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*02:01 B2M MHCI -4681 chip0420_672755 12.23 7.73 Chip1 T1D_2 T1D _ 6746 2434 EBV-BRLF1 EBV 0.92 1264 EBV-BRLF1 81 2353 10 EBV BRLF1 YVLDHLIVV effector memory T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*02:01 B2M MHCI -4682 chip0420_19279 12.52 10.99 Chip1 T1D_1 T1D _ 6746 2457 EBV-BLMF1 EBV 0.92 2531 NEG 95 2362 9 EBV BLMF1 GLCTLVAML effector memory T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*02:01 B2M MHCI -4683 chip0420_608126 -3.85 8.78 Chip1 healthy_1 healthy TGTGCAATGAGCGCGAGAGATGACAAGCTCATCTTT CAMSARDDKLIF TRAV12-3*01 TRAJ30*01 24.0 2043.0 TGTGCCAGCAGTTACTCAGGTACTAGCGTGGTCAATGAGCAGTTCTTC CASSYSGTSVVNEQFF TRBV6-2*01,TRBV6-3*01 TRBJ2-1*01 1.0 25.0 CAMSARDDKLIF_CASSYSGTSVVNEQFF 1 5259 ZNT8-115-123 ZNT8 0.93 74 ZNT8-115-123 79 5180 2 HomoSapiens ZNT8 LLSLFSLWL Naive T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*02:01 B2M MHCI -4684 chip0420_217754 12.69 7.32 Chip1 healthy_2 healthy TGCGCCAGCAGCCTAACTAGGGGCTCGAATTCGGAGTTCTTC CASSLTRGSNSEFF TRBV4-1*01 TRBJ2-1*01 15.0 778.0 _CASSLTRGSNSEFF 2 2757 BZLF1-190-197 EBV 0.83 2156 NEG 84 2673 10 EBV BZLF1 RAKFKQLL effector memory T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-B*08:01 B2M MHCI -4685 chip0420_58486 0.71 8.81 Chip1 T1D_1 T1D _ 6746 4232 IGRP-222-230 IGRP 0.98 10 IGRP-222-230 79 4153 4 HomoSapiens IGRP YLLLRVLNI Naive T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*02:01 B2M MHCI -4686 chip0420_658791 5.92 13.64 Chip1 healthy_1 healthy TGTGCCAGCATTAGCTTGGACCCCTTGTACTTC CASISLDPLYF TRBV2*01 TRBJ2-5*01 15.0 1128.0 _CASISLDPLYF 3 4727 M1 FLU 0.55 1250 NEG 76 4651 7 InfluenzaA M1 GILGFVFTL transitional T cells between effector and memory populations PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*02:01 B2M MHCI -4687 chip0420_576551 13.48 10.43 Chip1 T1D_2 T1D TGTGCTGCTAGGGCTTAACGTGGTGGGTCTAAGACGCTCTTT CAARA*RGGSKTLF TRAV2*01 TRAJ5*01,TRAJ14*01 2.0 65.0 TGTGCCAGCGGCACTCTAGCGGGGGCTGGGCAGACCCAGTACTTC CASGTLAGAGQTQYF TRBV3-1*01 TRBJ2-5*01 30.0 1590.0 CAARA*RGGSKTLF_CASGTLAGAGQTQYF 1 2650 EBV-BRLF1 EBV 0.54 1264 NEG 88 2562 9 EBV BRLF1 YVLDHLIVV effector memory T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*02:01 B2M MHCI -4688 chip0420_480179 12.94 13.57 Chip1 T1D_1 T1D TGTGCCAGCAGTCCGGACCAAACTAGCTCCTACAATGAGCAGTTCTTC CASSPDQTSSYNEQFF TRBV27*01 TRBJ2-1*01 60.0 3091.0 _CASSPDQTSSYNEQFF 47 1010 EBV-BRLF1 EBV 1.0 1264 NEG 93 917 11 EBV BRLF1 YVLDHLIVV effector T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*02:01 B2M MHCI -4689 chip0420_198712 -3.77 12.07 Chip1 healthy_1 healthy TGTGCTGGGGCAAACTGGATCTCTGACAGCTGGGGGCAATTGCAGTTT CAGANWISDSWGQLQF TRAV20*01 TRAJ24*01 42.0 2055.0 CAGANWISDSWGQLQF_ 1 3898 PGT-178 PGT 0.74 1480 NEG 76 3822 1 HomoSapiens PGT LLAGIGTVPI Naive T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*02:01 B2M MHCI -4690 chip0420_236717 -4.49 9.01 Chip1 T1D_1 T1D _ 6746 4339 MART1-ALA MART1 0.83 269 NEG 86 4253 2 HomoSapiens MART1 ALAGIGILTV Naive T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*02:01 B2M MHCI -4691 chip0420_876096 11.5 13.86 Chip1 T1D_2 T1D TGTGCCGTGAAGGACACCGACAAGCTCATCTTT CAVKDTDKLIF TRAV8-1*01 TRAJ34*01 6.0 994.0 CAVKDTDKLIF_ 56 1235 EBV-BRLF1 EBV 1.0 1264 NEG 92 1143 11 EBV BRLF1 YVLDHLIVV effector T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*02:01 B2M MHCI -4692 chip0420_819037 -0.87 10.57 Chip1 T1D_1 T1D TGTGCCAGCTCACCCGACAGGGTGGAGACCCAGTACTTC CASSPDRVETQYF TRBV18*01 TRBJ2-5*01 9.0 588.0 _CASSPDRVETQYF 1 5032 PGT-178 PGT 0.92 1480 PGT-178 90 4942 3 HomoSapiens PGT LLAGIGTVPI Naive T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*02:01 B2M MHCI -4693 chip0420_361730 -3.09 8.82 Chip1 T1D_3 T1D TGCAGTGCTTCGGACAGGAATAGCAATCAGCCCCAGCATTTT CSASDRNSNQPQHF TRBV20-1*01 TRBJ1-5*01 27.0 1885.0 _CSASDRNSNQPQHF 1 4867 GAD2-MMI-8 GAD65 0.61 40 GAD2-MMI-8 75 4792 2 HomoSapiens GAD2 MMIARFKM Naive T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-B*08:01 B2M MHCI -4694 chip0420_820208 7.28 11.92 Chip1 T1D_1 T1D _ 6746 4822 M1 FLU 0.78 1250 M1 89 4733 7 InfluenzaA M1 GILGFVFTL transitional T cells between effector and memory populations PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*02:01 B2M MHCI -4695 chip0420_761117 -3.96 11.41 Chip1 T1D_1 T1D TGTGCAATGAGCCCCTCTAACTTTGGAAATGAGAAATTAACCTTT CAMSPSNFGNEKLTF TRAV12-3*01 TRAJ48*01 82.0 3542.0 CAMSPSNFGNEKLTF_ 4 4199 PGT-178 PGT 0.8 1480 PGT-178 70 4129 1 HomoSapiens PGT LLAGIGTVPI Naive T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*02:01 B2M MHCI -4696 chip0420_692841 6.32 12.67 Chip1 T1D_1 T1D _ 6746 3847 M1 FLU 1.0 1250 NEG 78 3769 7 InfluenzaA M1 GILGFVFTL transitional T cells between effector and memory populations PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*02:01 B2M MHCI -4697 chip0420_260082 11.28 11.1 Chip1 T1D_1 T1D _ 6746 3340 EBV-BLMF1 EBV 0.63 2531 EBV-BLMF1 75 3265 9 EBV BLMF1 GLCTLVAML effector memory T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*02:01 B2M MHCI -4698 chip0420_231333 -2.64 11.0 Chip1 healthy_1 healthy TGTGTGGTGACCTTAGGCTTCGGGAATGTGCTGCATTGCGGGTCTGGCACTCAAGTG CVVTLGFGNVLHCGSGTQV TRAV12-1*01 TRAJ41*01 1.0 12.0 TGCAGCGTTGATCTAGGGCAGGGCACCGGGGAGCTGTTTTTT CSVDLGQGTGELFF TRBV29-1*01 TRBJ2-2*01 32.0 1961.0 CVVTLGFGNVLHCGSGTQV_CSVDLGQGTGELFF 1 4319 PGT-178 PGT 0.88 1480 PGT-178 76 4243 3 HomoSapiens PGT LLAGIGTVPI Naive T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*02:01 B2M MHCI -4699 chip0420_287343 6.11 13.08 Chip1 healthy_1 healthy TGTGCCAGTTCCACAGGGTCCTATGGCTACACCTTC CASSTGSYGYTF TRBV19*01 TRBJ1-2*01 1.0 122.0 _CASSTGSYGYTF 3 4059 M1 FLU 0.93 1250 NEG 75 3984 7 InfluenzaA M1 GILGFVFTL transitional T cells between effector and memory populations PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*02:01 B2M MHCI -4700 chip0420_133682 -2.77 8.47 Chip1 healthy_1 healthy TGTGCCAGCAGTTACTCGGGGGGGCCAGATACGCAGTATTTT CASSYSGGPDTQYF TRBV6-5*01 TRBJ2-3*01 10.0 400.0 _CASSYSGGPDTQYF 1 5597 PGT-178 PGT 0.77 1480 PGT-178 74 5523 2 HomoSapiens PGT LLAGIGTVPI Naive T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*02:01 B2M MHCI -4701 chip0420_852976 -3.03 14.09 Chip1 T1D_1 T1D _ 6746 3469 PGT-178 PGT 0.75 1480 PGT-178 79 3390 1 HomoSapiens PGT LLAGIGTVPI Naive T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*02:01 B2M MHCI -4702 chip0420_716661 11.05 7.09 Chip1 T1D_2 T1D TGTGCCGTGAAGGACACCGACAAGCTCATCTTT CAVKDTDKLIF TRAV8-1*01 TRAJ34*01 2.0 305.0 TGTGCCTGGGGTGTACAGCTAGCGGGAGTAGACGAGCAGTACTTC CAWGVQLAGVDEQYF TRBV30*01 TRBJ2-7*01 6.0 152.0 CAVKDTDKLIF_CAWGVQLAGVDEQYF 2 4993 EBV-BRLF1 EBV 0.83 1264 EBV-BRLF1 94 4899 10 EBV BRLF1 YVLDHLIVV effector memory T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*02:01 B2M MHCI -4703 chip0420_569702 10.73 11.74 Chip1 T1D_2 T1D TGCAGCGTTGGAGGCACATTCTATGGCTACACCTTC CSVGGTFYGYTF TRBV29-1*01 TRBJ1-2*01 77.0 5691.0 _CSVGGTFYGYTF 12 2475 EBV-BLMF1 EBV 0.5 2531 NEG 96 2379 9 EBV BLMF1 GLCTLVAML effector memory T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*02:01 B2M MHCI -4704 chip0420_328034 -4.26 11.17 Chip1 healthy_1 healthy TGTGCAATGACCCTATCTAACTTTGGAAATGAGAAATTAACCTTT CAMTLSNFGNEKLTF TRAV12-3*01 TRAJ48*01 4.0 277.0 TGTGCCAGCAGCCAAGACGGGGGACAGTATCGTGAAAAACTGTTTTTT CASSQDGGQYREKLFF TRBV14*01 TRBJ1-4*01 20.0 424.0 CAMTLSNFGNEKLTF_CASSQDGGQYREKLFF 1 3478 PGT-178 PGT 0.85 1480 PGT-178 79 3399 1 HomoSapiens PGT LLAGIGTVPI Naive T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*02:01 B2M MHCI -4705 chip0420_212595 6.56 11.83 Chip1 T1D_1 T1D _ 6746 6075 M1 FLU 0.9 1250 M1 84 5991 7 InfluenzaA M1 GILGFVFTL transitional T cells between effector and memory populations PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*02:01 B2M MHCI -4706 chip0420_688340 6.16 13.59 Chip1 T1D_1 T1D _ 6746 3850 M1 FLU 0.5 1250 M1 69 3781 7 InfluenzaA M1 GILGFVFTL transitional T cells between effector and memory populations PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*02:01 B2M MHCI -4707 chip0420_335287 12.28 10.47 Chip1 T1D_1 T1D TGTGCCAGCAGCCAGAGCCCGGGTGGTACGCAGTCGTTT CASSQSPGGTQSF TRBV14*01 TRBJ2-3*01 5.0 130.0 _CASSQSPGGTQSF 1 4441 EBV-BLMF1 EBV 0.71 2531 NEG 80 4361 9 EBV BLMF1 GLCTLVAML effector memory T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*02:01 B2M MHCI -4708 chip0420_254699 10.0 10.25 Chip1 healthy_2 healthy _ 6746 4201 EBNA3A-193-201 EBV 0.78 1022 NEG 93 4108 9 EBV EBNA3A FLRGRAYGL effector memory T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-B*08:01 B2M MHCI -4709 chip0420_836502 10.32 13.93 Chip1 T1D_1 T1D _ 6746 1156 M1 FLU 0.8 1250 NEG 74 1082 11 InfluenzaA M1 GILGFVFTL effector T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*02:01 B2M MHCI -4710 chip0420_118108 7.35 13.44 Chip1 T1D_1 T1D TGTGCCAGTAGTACGGGCCTTTATGGCTACACCTTC CASSTGLYGYTF TRBV19*01 TRBJ1-2*01 11.0 559.0 _CASSTGLYGYTF 1 3677 M1 FLU 0.81 1250 NEG 88 3589 7 InfluenzaA M1 GILGFVFTL transitional T cells between effector and memory populations PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*02:01 B2M MHCI -4711 chip0420_630833 13.75 13.55 Chip1 healthy_1 healthy _ 6746 1193 M1 FLU 0.95 1250 M1 70 1123 11 InfluenzaA M1 GILGFVFTL effector T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*02:01 B2M MHCI -4712 chip0420_420156 8.67 11.71 Chip1 T1D_1 T1D _ 6746 3988 ZNT8-16-24 ZNT8 0.42 39 NEG 92 3896 7 HomoSapiens ZNT8 KMYAFTLES transitional T cells between effector and memory populations PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*02:01 B2M MHCI -4713 chip0420_1430 13.74 9.76 Chip1 T1D_1 T1D TGCAGCGTCGGCTCCAGGGGAACTAACGAAAAACTGTTTTTT CSVGSRGTNEKLFF TRBV29-1*01 TRBJ1-4*01 41.0 2166.0 _CSVGSRGTNEKLFF 283 3115 EBV-BLMF1 EBV 0.62 2531 NEG 76 3039 12 EBV BLMF1 GLCTLVAML effector T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*02:01 B2M MHCI -4714 chip0420_269118 13.21 10.06 Chip1 T1D_1 T1D TGTGCCAGCAGCACGGGGCGGCTATCGAACACCGGGGAGCTGTTGTTT CASSTGRLSNTGELLF TRBV9*01 TRBJ2-2*01 11.0 688.0 _CASSTGRLSNTGELLF 1 3124 EBV-BLMF1 EBV 0.69 2531 NEG 74 3050 10 EBV BLMF1 GLCTLVAML effector memory T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*02:01 B2M MHCI -4715 chip0420_667087 11.93 13.38 Chip1 T1D_2 T1D TGTGTGGTGAACCTACCTAACGACTACAAGCTCAGCTTT CVVNLPNDYKLSF TRAV12-1*01 TRAJ20*01 30.0 2096.0 CVVNLPNDYKLSF_ 2 1591 EBV-BLMF1 EBV 0.47 2531 NEG 86 1505 11 EBV BLMF1 GLCTLVAML effector T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*02:01 B2M MHCI -4716 chip0420_544624 -4.28 9.47 Chip1 healthy_1 healthy TGCATCGTCAGAGGACCTTTGGACATGAGAAATTAACCTTT CIVRGPtt?GHEKLTF TRAV26-1*01 TRAJ48*01 39.0 2011.0 CIVRGPtt?GHEKLTF_ 1 5094 HCVNS4B-1807-1816 HCV 0.86 74 HCVNS4B-1807-1816 77 5017 2 HCV NS4B LLFNILGGWV Naive T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*02:01 B2M MHCI -4717 chip0420_195935 15.7 12.22 Chip1 T1D_1 T1D TGTGCTGTGAGTGATTTGGGAATGACATGCGCTTT CAVSDtt?GNDMRF TRAV8-4*01 TRAJ43*01 1.0 21.0 CAVSDtt?GNDMRF_ 1 1406 EBV-BLMF1 EBV 0.57 2531 NEG 82 1324 12 EBV BLMF1 GLCTLVAML effector T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*02:01 B2M MHCI -4718 chip0420_539389 -1.94 7.13 Chip1 healthy_1 healthy TATGCAGTGAGTGATCGAGGCACTACCAACACAGGCAAACTAATCTTT YAVSDRGTTNTGKLIF TRAV8-4*01 TRAJ37*01 2.0 97.0 TGTGCTTATAGGAGTGGGATGCGGTTCAGGGAGCCCAGAAGCTGGTATTT CAYRSGMRt?tQGAQKLVF TRAV38-2/DV8*01 TRAJ54*01 2.0 102.0 0.22 YAVSDRGTTNTGKLIF_ 1 5951 GAD65-476-484 GAD65 0.81 8 GAD65-476-484 78 5873 3 HomoSapiens GAD65 ELAEYLYNI Naive T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*02:01 B2M MHCI -4719 chip0420_387208 -2.65 9.28 Chip1 T1D_1 T1D _ 6746 5767 PGT-178 PGT 0.53 1480 PGT-178 91 5676 3 HomoSapiens PGT LLAGIGTVPI Naive T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*02:01 B2M MHCI -4720 chip0420_809879 11.63 11.07 Chip1 T1D_1 T1D _ 6746 3217 EBV-BLMF1 EBV 0.75 2531 NEG 93 3124 9 EBV BLMF1 GLCTLVAML effector memory T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*02:01 B2M MHCI -4721 chip0420_430324 12.24 12.94 Chip1 T1D_1 T1D _ 6746 2356 EBV-BLMF1 EBV 0.69 2531 NEG 83 2273 11 EBV BLMF1 GLCTLVAML effector T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*02:01 B2M MHCI -4722 chip0420_139746 10.38 11.3 Chip1 T1D_3 T1D TGTGCCAGCAGCTTAACCGGGAGCTTC CASSLTGSF TRBV7-8*01 TRBJ1-2*01 4.0 348.0 _CASSLTGSF 1 2504 BZLF1-190-197 EBV 0.88 2156 BZLF1-190-197 77 2427 9 EBV BZLF1 RAKFKQLL effector memory T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-B*08:01 B2M MHCI -4723 chip0420_287031 15.48 12.58 Chip1 T1D_1 T1D _ 6746 1231 EBV-BLMF1 EBV 0.75 2531 NEG 75 1156 12 EBV BLMF1 GLCTLVAML effector T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*02:01 B2M MHCI -4724 chip0420_471782 6.35 12.44 Chip1 healthy_1 healthy TGCGCCAGCAGCGCGAGACAGGGACTTCCCTACGAGCAGTACTTC CASSARQGLPYEQYF TRBV5-1*01 TRBJ2-7*01 35.0 2003.0 _CASSARQGLPYEQYF 1 4839 M1 FLU 0.77 1250 M1 63 4776 7 InfluenzaA M1 GILGFVFTL transitional T cells between effector and memory populations PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*02:01 B2M MHCI -4725 chip0420_220105 -1.78 10.0 Chip1 T1D_1 T1D _ 6746 4565 M1 FLU 0.86 1250 M1 85 4480 3 InfluenzaA M1 GILGFVFTL Naive T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*02:01 B2M MHCI -4726 chip0420_154655 5.76 12.13 Chip1 healthy_1 healthy TGTGCCAGTAGTAAACGGAGCACAGATACGCAGTATTTT CASSKRSTDTQYF TRBV19*01 TRBJ2-3*01 7.0 263.0 _CASSKRSTDTQYF 2 3956 M1 FLU 0.79 1250 M1 71 3885 7 InfluenzaA M1 GILGFVFTL transitional T cells between effector and memory populations PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*02:01 B2M MHCI -4727 chip0420_36479 -1.34 6.72 Chip1 healthy_1 healthy TGTGCCAGCAATTTTCCGCAGAACCCTTACGAGCAGTACTTC CASNFPQNPYEQYF TRBV28*01 TRBJ2-7*01 10.0 514.0 _CASNFPQNPYEQYF 1 8551 MART1-ALA MART1 0.44 269 NEG 64 8487 3 HomoSapiens MART1 ALAGIGILTV Naive T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*02:01 B2M MHCI -4728 chip0420_437713 9.15 8.61 Chip1 healthy_1 healthy _ 6746 6395 EBV-BRLF1 EBV 0.76 1264 EBV-BRLF1 95 6300 8 EBV BRLF1 YVLDHLIVV effector memory T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*02:01 B2M MHCI -4729 chip0420_155464 4.81 10.27 Chip1 T1D_2 T1D TGTGCCAGCAGTTTATCAGATACGCAGTATTTT CASSLSDTQYF TRBV27*01 TRBJ2-3*01 1.0 52.0 _CASSLSDTQYF 1 3595 MART1-ALA MART1 0.62 269 NEG 70 3525 6 HomoSapiens MART1 ALAGIGILTV central memory T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*02:01 B2M MHCI -4730 chip0420_96923 -4.22 10.25 Chip1 healthy_1 healthy _ 6746 4700 PGT-178 PGT 0.85 1480 PGT-178 84 4616 2 HomoSapiens PGT LLAGIGTVPI Naive T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*02:01 B2M MHCI -4731 chip0420_673737 7.91 12.34 Chip1 healthy_1 healthy TGTGCCAGTAGTATTCGTAGCTCCTACGAGCAGTACTTC CASSIRSSYEQYF TRBV19*01 TRBJ2-7*01 1.0 65.0 _CASSIRSSYEQYF 36 3336 M1 FLU 0.93 1250 NEG 79 3257 7 InfluenzaA M1 GILGFVFTL transitional T cells between effector and memory populations PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*02:01 B2M MHCI -4732 chip0420_660159 11.47 9.42 Chip1 T1D_1 T1D TGTGCCAGCAGTGACGGTCGGGTCCACCCGGGGACCCAGTACTTC CASSDGRVHPGTQYF TRBV2*01 TRBJ2-5*01 1.0 49.0 _CASSDGRVHPGTQYF 24 2973 EBV-BLMF1 EBV 0.4 2531 NEG 98 2875 9 EBV BLMF1 GLCTLVAML effector memory T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*02:01 B2M MHCI -4733 chip0420_570577 15.25 11.69 Chip1 T1D_1 T1D _ 6746 1852 EBV-BLMF1 EBV 0.93 2531 NEG 77 1775 12 EBV BLMF1 GLCTLVAML effector T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*02:01 B2M MHCI -4734 chip0420_533581 6.56 11.69 Chip1 healthy_1 healthy TGTGCCAGTAGTATCCGCAGCACAGATACGCAGTATTTT CASSIRSTDTQYF TRBV19*01 TRBJ2-3*01 18.0 1056.0 _CASSIRSTDTQYF 6 7973 M1 FLU 0.93 1250 M1 84 7889 7 InfluenzaA M1 GILGFVFTL transitional T cells between effector and memory populations PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*02:01 B2M MHCI -4735 chip0420_679127 7.27 12.37 Chip1 T1D_1 T1D _ 6746 5113 M1 FLU 0.81 1250 M1 79 5034 7 InfluenzaA M1 GILGFVFTL transitional T cells between effector and memory populations PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*02:01 B2M MHCI -4736 chip0420_537513 8.32 13.87 Chip1 T1D_1 T1D _ 6746 2535 M1 FLU 0.8 1250 NEG 70 2465 11 InfluenzaA M1 GILGFVFTL effector T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*02:01 B2M MHCI -4737 chip0420_362419 7.15 13.78 Chip1 healthy_1 healthy TGTGCCAGTAGTATAAGAAGTTCCTACGAGCAGTACTTC CASSIRSSYEQYF TRBV19*01 TRBJ2-7*01 16.0 793.0 _CASSIRSSYEQYF 36 3079 M1 FLU 1.0 1250 NEG 76 3003 7 InfluenzaA M1 GILGFVFTL transitional T cells between effector and memory populations PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*02:01 B2M MHCI -4738 chip0420_303447 5.86 12.08 Chip1 T1D_2 T1D _ 6746 4711 EBV-BRLF1 EBV 0.9 1264 EBV-BRLF1 75 4636 7 EBV BRLF1 YVLDHLIVV transitional T cells between effector and memory populations PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*02:01 B2M MHCI -4739 chip0420_256312 4.94 9.7 Chip1 T1D_1 T1D _ 6746 1665 EBV-LMP1-1 EBV 1.0 237 NEG 66 1599 6 EBV LMP1 YLLEMLWRL central memory T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*02:01 B2M MHCI -4740 chip0420_234972 -2.46 10.82 Chip1 healthy_2 healthy TGCAGTGCTAAGCACGAAAACCACCGGGACGGAGGCACAATGAGCAGTTCTTC CSAKHENHcg?GRRHNEQFF TRBV20-1*01 TRBJ2-1*01 30.0 1500.0 _CSAKHENHcg?GRRHNEQFF 1 3448 MART1-ALA MART1 0.82 269 NEG 73 3375 3 HomoSapiens MART1 ALAGIGILTV Naive T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*02:01 B2M MHCI -4741 chip0420_693842 9.21 7.79 Chip1 T1D_1 T1D _ 6746 3360 EBV-BRLF1 EBV 0.86 1264 EBV-BRLF1 78 3282 8 EBV BRLF1 YVLDHLIVV effector memory T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*02:01 B2M MHCI -4742 chip0420_759473 5.84 12.36 Chip1 T1D_1 T1D TGTGCCAGTAGTATAATCGATAGGACTCTTGGAACAGATACGCAGTATTTT CASSIIDRTLGTDTQYF TRBV19*01 TRBJ2-3*01 8.0 190.0 _CASSIIDRTLGTDTQYF 3 4224 M1 FLU 0.92 1250 M1 73 4151 7 InfluenzaA M1 GILGFVFTL transitional T cells between effector and memory populations PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*02:01 B2M MHCI -4743 chip0420_436230 14.98 11.87 Chip1 T1D_1 T1D TGTGCCAGCAGTTACGGACTAGCGGGCATCAATGAGCAGTTCTTC CASSYGLAGINEQFF TRBV6-2*01,TRBV6-3*01 TRBJ2-1*01 5.0 83.0 _CASSYGLAGINEQFF 2 2915 EBV-BRLF1 EBV 0.94 1264 EBV-BRLF1 68 2847 12 EBV BRLF1 YVLDHLIVV effector T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*02:01 B2M MHCI -4744 chip0420_145459 6.47 14.4 Chip1 healthy_1 healthy TGTGCAGGAGGAGGAAGCCAAGGAAATCTCATCTTT CAGGGSQGNLIF TRAV27*01 TRAJ42*01 40.0 2320.0 TGTGCTGACGACGGGGTAGTTCAGGAGGAGGTGCTGACGGACTCACCTTT CADDGVVQg?aGGADGLTF TRAV21*01 TRAJ45*01 44.0 2136.0 0.45 TGTGCCAGTAGTATAAGAAGTTCCTACGAGCAGTACTTC CASSIRSSYEQYF TRBV19*01 TRBJ2-7*01 22.0 1223.0 CAGGGSQGNLIF_CASSIRSSYEQYF 1 2932 M1 FLU 0.74 1250 M1 80 2852 7 InfluenzaA M1 GILGFVFTL transitional T cells between effector and memory populations PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*02:01 B2M MHCI -4745 chip0420_374606 -0.2 9.15 Chip1 healthy_1 healthy TGTGCCAGCAGTTCCCCGTGGGGGAAGAACACTGAAGCTTTCTTT CASSSPWGKNTEAFF TRBV28*01 TRBJ1-1*01 17.0 802.0 _CASSSPWGKNTEAFF 1 3978 PGT-178 PGT 0.69 1480 PGT-178 70 3908 4 HomoSapiens PGT LLAGIGTVPI Naive T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*02:01 B2M MHCI -4746 chip0420_691104 11.22 7.49 Chip1 healthy_2 healthy _ 6746 4237 EBV-LMP2-FLY EBV 0.67 355 NEG 81 4156 10 EBV LMP2 FLYALALLL effector memory T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*02:01 B2M MHCI -4747 chip0420_626541 16.23 10.21 Chip1 T1D_1 T1D TGCAGCGTCGGCTCCAGGGGAACTAATGAAAAACTGTTTTTT CSVGSRGTNEKLFF TRBV29-1*01 TRBJ1-4*01 43.0 2021.0 _CSVGSRGTNEKLFF 283 2826 EBV-BLMF1 EBV 0.67 2531 NEG 73 2753 12 EBV BLMF1 GLCTLVAML effector T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*02:01 B2M MHCI -4748 chip0420_490871 13.89 13.05 Chip1 T1D_2 T1D TGTGTGGTGAACGGCAGGGATAGCAGCTATAAATTGATCTTC CVVNGRDSSYKLIF TRAV12-1*01 TRAJ12*01 84.0 3915.0 CVVNGRDSSYKLIF_ 17 1889 EBV-BLMF1 EBV 1.0 2531 NEG 66 1823 12 EBV BLMF1 GLCTLVAML effector T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*02:01 B2M MHCI -4749 chip0420_769832 10.08 10.93 Chip1 T1D_1 T1D _ 6746 3480 EBV-BRLF1 EBV 0.76 1264 EBV-BRLF1 78 3402 9 EBV BRLF1 YVLDHLIVV effector memory T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*02:01 B2M MHCI -4750 chip0420_641814 -2.21 10.43 Chip1 T1D_2 T1D _ 6746 4222 PGT-178 PGT 0.69 1480 PGT-178 75 4147 3 HomoSapiens PGT LLAGIGTVPI Naive T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*02:01 B2M MHCI -4751 chip0420_371547 13.71 7.68 Chip1 T1D_2 T1D TGCAGCGTGGGGACAGGGGGAACTAATGAAAAACTGTTTTTT CSVGTGGTNEKLFF TRBV29-1*01 TRBJ1-4*01 13.0 550.0 _CSVGTGGTNEKLFF 638 2357 EBV-BLMF1 EBV 0.75 2531 NEG 89 2268 10 EBV BLMF1 GLCTLVAML effector memory T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*02:01 B2M MHCI -4752 chip0420_105006 7.65 11.89 Chip1 healthy_1 healthy _ 6746 4495 M1 FLU 0.8 1250 NEG 86 4409 7 InfluenzaA M1 GILGFVFTL transitional T cells between effector and memory populations PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*02:01 B2M MHCI -4753 chip0420_294859 12.61 9.39 Chip1 T1D_1 T1D TGTGCCAGCAGCCAGGGATTGGCCAACATCCTGACTTTC CASSQGLANILTF TRBV3-1*01 TRBJ2-6*01 24.0 1647.0 _CASSQGLANILTF 1 3158 EBV-BRLF1 EBV 0.81 1264 EBV-BRLF1 83 3075 10 EBV BRLF1 YVLDHLIVV effector memory T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*02:01 B2M MHCI -4754 chip0420_767384 6.05 12.6 Chip1 healthy_1 healthy _ 6746 4913 M1 FLU 0.83 1250 M1 74 4839 7 InfluenzaA M1 GILGFVFTL transitional T cells between effector and memory populations PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*02:01 B2M MHCI -4755 chip0420_690064 10.67 8.37 Chip1 T1D_3 T1D _ 6746 3193 BZLF1-190-197 EBV 0.47 2156 NEG 85 3108 10 EBV BZLF1 RAKFKQLL effector memory T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-B*08:01 B2M MHCI -4756 chip0420_452709 6.31 13.42 Chip1 T1D_1 T1D _ 6746 4015 M1 FLU 0.75 1250 M1 79 3936 7 InfluenzaA M1 GILGFVFTL transitional T cells between effector and memory populations PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*02:01 B2M MHCI -4757 chip0420_291901 -0.87 6.7 Chip1 healthy_1 healthy _ 6746 6385 POL-132-140 HIV 0.59 37 NEG 80 6305 3 HIV-1 POL LVGPTPVNI Naive T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*02:01 B2M MHCI -4758 chip0420_814026 13.19 13.11 Chip1 T1D_2 T1D _ 6746 2152 EBV-BLMF1 EBV 0.92 2531 NEG 89 2063 10 EBV BLMF1 GLCTLVAML effector memory T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*02:01 B2M MHCI -4759 chip0420_615690 9.06 9.24 Chip1 T1D_3 T1D TGTGCCAGCAGCTCAGGGGGGCCCGGGGATCAGCCCCAGCATTTT CASSSGGPGDQPQHF TRBV7-9*01 TRBJ1-5*01 33.0 1125.0 _CASSSGGPGDQPQHF 1 4741 BZLF1-190-197 EBV 0.53 2156 BZLF1-190-197 69 4672 8 EBV BZLF1 RAKFKQLL effector memory T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-B*08:01 B2M MHCI -4760 chip0420_605782 12.31 10.53 Chip1 T1D_1 T1D TGTGCAGAGAGTACAAGTGGGGGAAAGCTTATCTTC CAESTSGGKLIF TRAV5*01 TRAJ23*01 3.0 263.0 TGCAGCGTCGGCTCCAGGGGAACTAATGAAAAACTGTTTTTT CSVGSRGTNEKLFF TRBV29-1*01 TRBJ1-4*01 135.0 7310.0 CAESTSGGKLIF_CSVGSRGTNEKLFF 19 3526 EBV-BLMF1 EBV 0.67 2531 NEG 99 3427 9 EBV BLMF1 GLCTLVAML effector memory T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*02:01 B2M MHCI -4761 chip0420_189305 6.02 12.65 Chip1 T1D_1 T1D TGTGGAGCAGTCACCGCCATGCGCTTT CGAVTAMRF TRAV34*01 TRAJ43*01 2.0 235.0 TGTGCCAGCAGCTCGGGACTAGTCGCCCCCGGGGAGCTGTTTTTT CASSSGLVAPGELFF TRBV2*01 TRBJ2-2*01 1.0 116.0 CGAVTAMRF_CASSSGLVAPGELFF 1 4930 M1 FLU 0.93 1250 M1 79 4851 7 InfluenzaA M1 GILGFVFTL transitional T cells between effector and memory populations PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*02:01 B2M MHCI -4762 chip0420_808738 -4.75 9.48 Chip1 healthy_1 healthy TGTACAATGAACGACTGGGGGAAATTGCAGTTT CTMNDWGKLQF TRAV12-3*01 TRAJ24*01 19.0 2036.0 TGTGCCAGCAGTCCCGGGGAGGGCATCGGCTCCTACGAGCAGTACTTC CASSPGEGIGSYEQYF TRBV2*01 TRBJ2-7*01 42.0 2051.0 CTMNDWGKLQF_CASSPGEGIGSYEQYF 1 4807 ZNT8-314-322 ZNT8 1.0 16 NEG 73 4734 2 HomoSapiens ZNT8 ILSAHVATA Naive T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*02:01 B2M MHCI -4763 chip0420_584434 5.26 11.65 Chip1 T1D_2 T1D TGTGCCGCTGGGGATAACAATGACATGCGCTTT CAAGDNNDMRF TRAV12-1*01 TRAJ43*01 1.0 130.0 CAAGDNNDMRF_ 1 5897 MART1-ALA MART1 0.72 269 NEG 84 5813 6 HomoSapiens MART1 ALAGIGILTV central memory T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*02:01 B2M MHCI -4764 chip0420_572333 -2.68 13.48 Chip1 healthy_1 healthy TGTGCCAGCAGTCGAGGGACGGGACTGGACCTCAATGAGCAGTTCTTC CASSRGTGLDLNEQFF TRBV12-3*01,TRBV12-4*01 TRBJ2-1*01 21.0 1072.0 _CASSRGTGLDLNEQFF 1 3100 PGT-178 PGT 0.89 1480 PGT-178 73 3027 1 HomoSapiens PGT LLAGIGTVPI Naive T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*02:01 B2M MHCI -4765 chip0420_193978 11.82 12.03 Chip1 T1D_1 T1D TGTGCCACCCAACAGGGGAGGGACAGTCAGCCCCAGCATTTT CATQQGRDSQPQHF TRBV28*01 TRBJ1-5*01 12.0 456.0 _CATQQGRDSQPQHF 52 1998 EBV-BLMF1 EBV 0.92 2531 NEG 77 1921 11 EBV BLMF1 GLCTLVAML effector T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*02:01 B2M MHCI -4766 chip0420_856159 10.03 7.57 Chip1 T1D_2 T1D _ 6746 3431 EBV-BRLF1 EBV 0.94 1264 EBV-BRLF1 72 3359 10 EBV BRLF1 YVLDHLIVV effector memory T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*02:01 B2M MHCI -4767 chip0420_566419 12.83 13.86 Chip1 T1D_2 T1D _ 6746 773 EBV-BRLF1 EBV 0.92 1264 NEG 88 685 11 EBV BRLF1 YVLDHLIVV effector T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*02:01 B2M MHCI -4768 chip0420_194212 6.43 14.17 Chip1 T1D_1 T1D _ 6746 4148 M1 FLU 0.96 1250 M1 71 4077 7 InfluenzaA M1 GILGFVFTL transitional T cells between effector and memory populations PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*02:01 B2M MHCI -4769 chip0420_171451 -3.19 10.03 Chip1 T1D_1 T1D TGCAGCGTTGGAGAAGAGGGACAGGGAGAAGAGACCCAGTACTTC CSVGEEGQGEETQYF TRBV29-1*01 TRBJ2-5*01 108.0 5327.0 _CSVGEEGQGEETQYF 1 3628 PGT-178 PGT 0.88 1480 PGT-178 69 3559 2 HomoSapiens PGT LLAGIGTVPI Naive T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*02:01 B2M MHCI -4770 chip0420_864480 6.93 13.26 Chip1 T1D_1 T1D _ 6746 3368 M1 FLU 0.83 1250 M1 71 3297 7 InfluenzaA M1 GILGFVFTL transitional T cells between effector and memory populations PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*02:01 B2M MHCI -4771 chip0420_503304 6.26 12.93 Chip1 healthy_1 healthy _ 6746 4950 M1 FLU 0.7 1250 M1 86 4864 7 InfluenzaA M1 GILGFVFTL transitional T cells between effector and memory populations PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*02:01 B2M MHCI -4772 chip0420_105503 11.53 7.37 Chip1 T1D_1 T1D _ 6746 4340 EBV-BLMF1 EBV 0.81 2531 EBV-BLMF1 73 4267 10 EBV BLMF1 GLCTLVAML effector memory T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*02:01 B2M MHCI -4773 chip0420_797524 13.74 8.33 Chip1 T1D_1 T1D TGCGGCACAGAGGAACCTAACGACTACAAGCTCAGCTTT CGTEEPNDYKLSF TRAV30*01 TRAJ20*01 15.0 750.0 TGTGCCAGCAGCACGGGACAGCTATCGAACACCGGAGAGCTGTTTTTT CASSTGQLSNTGELFF TRBV9*01 TRBJ2-2*01 39.0 2043.0 CGTEEPNDYKLSF_CASSTGQLSNTGELFF 18 3344 EBV-BLMF1 EBV 0.44 2531 NEG 97 3247 10 EBV BLMF1 GLCTLVAML effector memory T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*02:01 B2M MHCI -4774 chip0420_87418 9.57 9.61 Chip1 T1D_3 T1D TGTGCCAGCAGTCTCCCCCTTCGACAGGATGAACAGCCCCAGCATTTT CASSLPLRQDEQPQHF TRBV28*01 TRBJ1-5*01 17.0 836.0 _CASSLPLRQDEQPQHF 1 4029 EBNA3A-158-166 EBV 0.44 444 NEG 71 3958 8 EBV EBNA3A QAKWRLQTL effector memory T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-B*08:01 B2M MHCI -4775 chip0420_367575 -0.97 6.82 Chip1 T1D_1 T1D _ 6746 8087 PGT-178 PGT 0.83 1480 PGT-178 81 8006 3 HomoSapiens PGT LLAGIGTVPI Naive T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*02:01 B2M MHCI -4776 chip0420_286372 10.86 9.65 Chip1 T1D_1 T1D TGCAGCGTCGGCTCCAGAGGAACTAATGAAAAACTGTTTTTT CSVGSRGTNEKLFF TRBV29-1*01 TRBJ1-4*01 2.0 51.0 _CSVGSRGTNEKLFF 283 3959 EBV-BLMF1 EBV 0.75 2531 NEG 62 3897 9 EBV BLMF1 GLCTLVAML effector memory T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*02:01 B2M MHCI -4777 chip0420_830701 -4.31 10.55 Chip1 healthy_2 healthy TGTGCCAGCAGCTTAGGGTCAGGTGGATGGGAGACCCAGTACTTC CASSLGSGGWETQYF TRBV13*01 TRBJ2-5*01 1.0 30.0 _CASSLGSGGWETQYF 1 3828 PTPRN-790-798 PTPRN 0.62 6 NEG 62 3766 2 HomoSapiens PTPRN TIADFWQMV Naive T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*02:01 B2M MHCI -4778 chip0420_454379 12.86 10.71 Chip1 T1D_1 T1D _ 6746 3202 EBV-BLMF1 EBV 0.89 2531 NEG 91 3111 9 EBV BLMF1 GLCTLVAML effector memory T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*02:01 B2M MHCI -4779 chip0420_431066 -3.29 13.41 Chip1 T1D_3 T1D _ 6746 3075 ZNT8-YAY-8 ZNT8 0.41 54 ZNT8-YAY-8 61 3014 1 HomoSapiens ZNT8 YAYAKWKL Naive T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-B*08:01 B2M MHCI -4780 chip0420_535338 -4.03 8.16 Chip1 T1D_2 T1D TGTGCCAGCAGCTTGGGAGAGAGCATGAACACTGAAGCTTTCTTT CASSLGESMNTEAFF TRBV5-6*01 TRBJ1-1*01 31.0 1175.0 _CASSLGESMNTEAFF 1 4391 GAG-433-442 HIV 0.86 19 GAG-433-442 71 4320 2 HIV-1 GAG FLGKIWPSYK Naive T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*02:01 B2M MHCI -4781 chip0420_777335 6.83 13.52 Chip1 T1D_1 T1D _ 6746 3311 M1 FLU 0.62 1250 M1 71 3240 7 InfluenzaA M1 GILGFVFTL transitional T cells between effector and memory populations PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*02:01 B2M MHCI -4782 chip0420_562030 12.8 8.99 Chip1 T1D_1 T1D TGCAGCGTCGGCTCCAGGGGAACTAATGAAAAACTGTTTTTT CSVGSRGTNEKLFF TRBV29-1*01 TRBJ1-4*01 23.0 1023.0 _CSVGSRGTNEKLFF 283 2259 EBV-BLMF1 EBV 0.75 2531 NEG 73 2186 10 EBV BLMF1 GLCTLVAML effector memory T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*02:01 B2M MHCI -4783 chip0420_326370 -2.27 15.75 Chip1 T1D_2 T1D TGTGCAATGAGCCTATCTAACTTTGGAAATGAGAAATTAACCTTT CAMSLSNFGNEKLTF TRAV12-3*01 TRAJ48*01 28.0 653.0 CAMSLSNFGNEKLTF_ 16 859 PGT-178 PGT 0.86 1480 NEG 79 780 1 HomoSapiens PGT LLAGIGTVPI Naive T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*02:01 B2M MHCI -4784 chip0420_131716 6.66 13.72 Chip1 T1D_1 T1D TGTGCTTATAGGAGCCCGCCCTCATCTGCAGCGCTGGTCTTT CAYRSPPSSAALVF TRAV38-2/DV8*01 TRAJ57*01 5.0 125.0 CAYRSPPSSAALVF_ 1 3364 M1 FLU 0.64 1250 NEG 85 3279 7 InfluenzaA M1 GILGFVFTL transitional T cells between effector and memory populations PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*02:01 B2M MHCI -4785 chip0420_856875 -2.6 14.92 Chip1 T1D_1 T1D _ 6746 2263 CVB3-P3A CVB 1.0 77 NEG 70 2193 1 CoxsackievirusB P3A GIIYIIYKL Naive T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*02:01 B2M MHCI -4786 chip0420_250734 8.87 14.02 Chip1 healthy_1 healthy _ 6746 2069 M1 FLU 0.9 1250 NEG 86 1983 11 InfluenzaA M1 GILGFVFTL effector T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*02:01 B2M MHCI -4787 chip0420_216940 -2.33 7.29 Chip1 healthy_1 healthy TGTCTTCTCCACCTATAATTCAGGGAGCCCAGAAGCTGGTATTT CLLHL*Fa?gGAQKLVF TRAV40*01 TRAJ54*01 39.0 2165.0 TGTGCCAGCAGTTTTCTCGGGACAGGTCTCAACGAGCAGTACTTC CASSFLGTGLNEQYF TRBV28*01 TRBJ2-7*01 4.0 153.0 CLLHL*Fa?gGAQKLVF_CASSFLGTGLNEQYF 1 6639 PGT-178 PGT 0.88 1480 PGT-178 75 6564 3 HomoSapiens PGT LLAGIGTVPI Naive T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*02:01 B2M MHCI -4788 chip0420_376594 6.25 13.89 Chip1 T1D_1 T1D _ 6746 3310 M1 FLU 0.64 1250 M1 80 3230 7 InfluenzaA M1 GILGFVFTL transitional T cells between effector and memory populations PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*02:01 B2M MHCI -4789 chip0420_529447 -4.02 9.96 Chip1 healthy_1 healthy _ 6746 3923 GAD65-476-484 GAD65 0.82 8 GAD65-476-484 93 3830 2 HomoSapiens GAD65 ELAEYLYNI Naive T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*02:01 B2M MHCI -4790 chip0420_250412 -2.64 12.61 Chip1 T1D_1 T1D TGTGCAGAGTTGGGGGCTCCTGCCCGCTGGGGGCCCTTGCCGTTT CAELGAPARWGPLPF TRAV13-2*01 TRAJ24*01 12.0 837.0 TGCAGTGCTAGATCGCCGGTGAGGGACACTGAAGCTTTCTTT CSARSPVRDTEAFF TRBV20-1*01 TRBJ1-1*01 29.0 819.0 CAELGAPARWGPLPF_CSARSPVRDTEAFF 1 4259 VPR-59-67 HIV 0.86 16 VPR-59-67 83 4176 1 HIV-1 VPR AIIRILQQL Naive T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*02:01 B2M MHCI -4791 chip0420_227714 12.24 10.33 Chip1 T1D_1 T1D TGTGCCAGCAGTTCCGGAGGGAACGTGGATACGCAGTATTTT CASSSGGNVDTQYF TRBV7-3*01 TRBJ2-3*01 32.0 2058.0 _CASSSGGNVDTQYF 47 2808 EBV-BLMF1 EBV 1.0 2531 NEG 89 2719 9 EBV BLMF1 GLCTLVAML effector memory T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*02:01 B2M MHCI -4792 chip0420_637552 7.3 13.37 Chip1 T1D_1 T1D TGTGCCGGGGGGGGGGCGGGCTATGGCTACACCTTC CAGGGAGYGYTF TRBV7-8*01 TRBJ1-2*01 11.0 1030.0 _CAGGGAGYGYTF 1 3718 M1 FLU 0.57 1250 NEG 82 3636 7 InfluenzaA M1 GILGFVFTL transitional T cells between effector and memory populations PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*02:01 B2M MHCI -4793 chip0420_45546 5.91 13.64 Chip1 healthy_1 healthy TGTGCCAGTAGTATAAGAAGTTCCTACGAGCAGTACTTC CASSIRSSYEQYF TRBV19*01 TRBJ2-7*01 41.0 2511.0 _CASSIRSSYEQYF 36 4986 M1 FLU 0.82 1250 M1 71 4915 7 InfluenzaA M1 GILGFVFTL transitional T cells between effector and memory populations PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*02:01 B2M MHCI -4794 chip0420_549849 8.24 13.7 Chip1 T1D_1 T1D _ 6746 2567 M1 FLU 0.86 1250 M1 70 2497 7 InfluenzaA M1 GILGFVFTL transitional T cells between effector and memory populations PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*02:01 B2M MHCI -4795 chip0420_458215 15.38 12.5 Chip1 T1D_1 T1D _ 6746 1465 EBV-BLMF1 EBV 0.57 2531 NEG 95 1370 12 EBV BLMF1 GLCTLVAML effector T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*02:01 B2M MHCI -4796 chip0420_387252 11.85 13.77 Chip1 T1D_2 T1D _ 6746 1280 EBV-BRLF1 EBV 0.92 1264 EBV-BRLF1 75 1205 11 EBV BRLF1 YVLDHLIVV effector T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*02:01 B2M MHCI -4797 chip0420_809413 6.21 13.28 Chip1 healthy_1 healthy TGTGCTGTCGTAAGAAACCAGTGGCTCTAGGTTGCCCTTT CAVVRNca??gtGSRLPF TRAV41*01 TRAJ10*01 29.0 2068.0 CAVVRNca??gtGSRLPF_ 1 3526 M1 FLU 0.83 1250 M1 63 3463 7 InfluenzaA M1 GILGFVFTL transitional T cells between effector and memory populations PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*02:01 B2M MHCI -4798 chip0420_712133 7.19 12.85 Chip1 healthy_1 healthy _ 6746 3441 M1 FLU 0.73 1250 NEG 66 3375 7 InfluenzaA M1 GILGFVFTL transitional T cells between effector and memory populations PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*02:01 B2M MHCI -4799 chip0420_659586 9.88 10.72 Chip1 T1D_1 T1D TGTGCCAGCAGCCCAGTTAGCGGGTCAACCTACGAGCAGTACTTC CASSPVSGSTYEQYF TRBV3-1*01 TRBJ2-7*01 32.0 1356.0 _CASSPVSGSTYEQYF 80 4600 EBV-BLMF1 EBV 0.6 2531 EBV-BLMF1 89 4511 9 EBV BLMF1 GLCTLVAML effector memory T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*02:01 B2M MHCI -4800 chip0420_619441 5.07 10.4 Chip1 healthy_2 healthy TGTGCCCTCTATCGGTGCTGGCAACAACCGTAAGCTGATTTGG CALYRCW??cNNRKLIW TRAV13-2*01 TRAJ38*01 28.0 2026.0 TGTGCCAGCAGTTACTGGGGGAATCAGCCCCAGCATTTT CASSYWGNQPQHF TRBV6-2*01,TRBV6-3*01 TRBJ1-5*01 18.0 747.0 CALYRCW??cNNRKLIW_CASSYWGNQPQHF 1 3481 MART1-A27L MART1 0.75 16 NEG 77 3404 6 HomoSapiens MART1 ELAGIGILTV central memory T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*02:01 B2M MHCI -4801 chip0420_513296 6.18 12.58 Chip1 T1D_1 T1D _ 6746 6481 M1 FLU 0.9 1250 M1 71 6410 7 InfluenzaA M1 GILGFVFTL transitional T cells between effector and memory populations PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*02:01 B2M MHCI -4802 chip0420_495647 12.61 13.27 Chip1 T1D_1 T1D _ 6746 2887 EBV-BLMF1 EBV 0.54 2531 NEG 95 2792 11 EBV BLMF1 GLCTLVAML effector T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*02:01 B2M MHCI -4803 chip0420_438288 -3.4 11.62 Chip1 healthy_1 healthy _ 6746 4031 HCVNS4B-1807-1816 HCV 0.75 74 NEG 78 3953 1 HCV NS4B LLFNILGGWV Naive T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*02:01 B2M MHCI -4804 chip0420_502572 8.65 11.48 Chip1 T1D_1 T1D TGCAGTGCCATAGATACATCCGGGACAGGGGGCTACGAGCAGTACTTC CSAIDTSGTGGYEQYF TRBV20-1*01 TRBJ2-7*01 44.0 1949.0 _CSAIDTSGTGGYEQYF 5 4085 HCVNS4B-1807-1816 HCV 0.94 74 HCVNS4B-1807-1816 88 3997 7 HCV NS4B LLFNILGGWV transitional T cells between effector and memory populations PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*02:01 B2M MHCI -4805 chip0420_67142 12.97 7.95 Chip1 T1D_2 T1D TGTGCCAGCAGCTCGGGACTAGTCGCCCCCGGGGAGCTGTTTTTT CASSSGLVAPGELFF TRBV2*01 TRBJ2-2*01 19.0 1066.0 _CASSSGLVAPGELFF 133 3214 EBV-BLMF1 EBV 0.57 2531 NEG 85 3129 10 EBV BLMF1 GLCTLVAML effector memory T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*02:01 B2M MHCI -4806 chip0420_511823 -3.31 9.15 Chip1 healthy_1 healthy _ 6746 4715 PGT-178 PGT 0.53 1480 PGT-178 71 4644 2 HomoSapiens PGT LLAGIGTVPI Naive T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*02:01 B2M MHCI -4807 chip0420_201950 11.23 14.07 Chip1 healthy_1 healthy _ 6746 912 M1 FLU 0.76 1250 M1 78 834 11 InfluenzaA M1 GILGFVFTL effector T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*02:01 B2M MHCI -4808 chip0420_843860 5.7 12.78 Chip1 healthy_1 healthy _ 6746 4397 M1 FLU 0.89 1250 M1 77 4320 7 InfluenzaA M1 GILGFVFTL transitional T cells between effector and memory populations PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*02:01 B2M MHCI -4809 chip0420_391932 -2.16 12.55 Chip1 healthy_1 healthy _ 6746 3616 ZNT8-115-123 ZNT8 0.98 74 ZNT8-115-123 82 3534 4 HomoSapiens ZNT8 LLSLFSLWL Naive T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*02:01 B2M MHCI -4810 chip0420_287669 10.06 11.29 Chip1 T1D_2 T1D _ 6746 2970 EBV-BRLF1 EBV 1.0 1264 EBV-BRLF1 82 2888 9 EBV BRLF1 YVLDHLIVV effector memory T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*02:01 B2M MHCI -4811 chip0420_261930 8.12 13.57 Chip1 T1D_1 T1D _ 6746 2583 M1 FLU 0.81 1250 M1 78 2505 7 InfluenzaA M1 GILGFVFTL transitional T cells between effector and memory populations PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*02:01 B2M MHCI -4812 chip0420_692994 6.0 13.08 Chip1 T1D_1 T1D _ 6746 4614 M1 FLU 1.0 1250 NEG 82 4532 7 InfluenzaA M1 GILGFVFTL transitional T cells between effector and memory populations PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*02:01 B2M MHCI -4813 chip0420_623537 -0.83 6.7 Chip1 healthy_1 healthy _ 6746 7127 MART1-A28L MART1 0.78 84 MART1-A28L 71 7056 3 HomoSapiens MART1 ALGIGILTV Naive T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*02:01 B2M MHCI -4814 chip0420_197307 5.91 13.37 Chip1 T1D_1 T1D TGTGCCAGTAGTATAAATGGGGGCCGGAGGGATGGCTACACCTTC CASSINGGRRDGYTF TRBV19*01 TRBJ1-2*01 47.0 1386.0 _CASSINGGRRDGYTF 32 4922 M1 FLU 0.84 1250 M1 90 4832 7 InfluenzaA M1 GILGFVFTL transitional T cells between effector and memory populations PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*02:01 B2M MHCI -4815 chip0420_708850 5.69 11.97 Chip1 T1D_2 T1D TGTGCCGTGGGCGAAGGAAGCTACATACCTACATTT CAVGEGSYIPTF TRAV12-2*01 TRAJ6*01 45.0 4193.0 CAVGEGSYIPTF_ 1 3270 PGT-178 PGT 0.73 1480 NEG 72 3198 7 HomoSapiens PGT LLAGIGTVPI transitional T cells between effector and memory populations PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*02:01 B2M MHCI -4816 chip0420_785577 6.02 12.62 Chip1 healthy_1 healthy _ 6746 5576 M1 FLU 0.67 1250 M1 77 5499 7 InfluenzaA M1 GILGFVFTL transitional T cells between effector and memory populations PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*02:01 B2M MHCI -4817 chip0420_138839 -3.28 8.77 Chip1 T1D_1 T1D TGTGCCAGCAGTCACGGTGAGCAGTTCTTC CASSHGEQFF TRBV2*01 TRBJ2-1*01 37.0 3015.0 _CASSHGEQFF 1 5920 ROTA-VP2-1 ROTA 0.97 17 ROTA-VP2-1 77 5843 2 RotavirusA VP2 SLISGMWLL Naive T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*02:01 B2M MHCI -4818 chip0420_839415 11.75 8.44 Chip1 T1D_2 T1D _ 6746 2468 EBV-BLMF1 EBV 0.8 2531 NEG 78 2390 10 EBV BLMF1 GLCTLVAML effector memory T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*02:01 B2M MHCI -4819 chip0420_690372 -4.44 9.6 Chip1 healthy_1 healthy _ 6746 4638 PGT-178 PGT 0.69 1480 PGT-178 74 4564 2 HomoSapiens PGT LLAGIGTVPI Naive T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*02:01 B2M MHCI -4820 chip0420_62582 11.76 13.8 Chip1 T1D_2 T1D _ 6746 1012 EBV-BRLF1 EBV 1.0 1264 NEG 66 946 11 EBV BRLF1 YVLDHLIVV effector T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*02:01 B2M MHCI -4821 chip0420_284460 9.31 11.14 Chip1 healthy_1 healthy _ 6746 4766 M1 FLU 0.93 1250 M1 65 4701 9 InfluenzaA M1 GILGFVFTL effector memory T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*02:01 B2M MHCI -4822 chip0420_98293 -4.1 9.71 Chip1 healthy_1 healthy TGTGCCAGCAGGATGAACAGGGTGCGGCAACCCACAGATACGCAGTATTTT CASRMNRVRQPTDTQYF TRBV5-6*01 TRBJ2-3*01 27.0 902.0 _CASRMNRVRQPTDTQYF 1 4295 PGT-178 PGT 0.46 1480 PGT-178 65 4230 2 HomoSapiens PGT LLAGIGTVPI Naive T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*02:01 B2M MHCI -4823 chip0420_790961 13.28 10.64 Chip1 T1D_1 T1D TGTGCCAGCAGCACGGGACAGCTATCGAACACCGGGGAGCTGTTTTTT CASSTGQLSNTGELFF TRBV9*01 TRBJ2-2*01 85.0 3997.0 _CASSTGQLSNTGELFF 82 4453 EBV-BLMF1 EBV 0.81 2531 EBV-BLMF1 74 4379 9 EBV BLMF1 GLCTLVAML effector memory T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*02:01 B2M MHCI -4824 chip0420_599413 10.08 11.21 Chip1 T1D_1 T1D _ 6746 3276 EBV-BLMF1 EBV 1.0 2531 NEG 89 3187 9 EBV BLMF1 GLCTLVAML effector memory T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*02:01 B2M MHCI -4825 chip0420_792083 6.11 13.3 Chip1 healthy_2 healthy TGTGCAGGAGCTTCAGGAGGAAGCCAAGGAAATCTCATCTTT CAGASGGSQGNLIF TRAV27*01 TRAJ42*01 1.0 58.0 CAGASGGSQGNLIF_ 1 3410 M1 FLU 0.56 1250 NEG 68 3342 7 InfluenzaA M1 GILGFVFTL transitional T cells between effector and memory populations PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*02:01 B2M MHCI -4826 chip0420_493083 4.99 10.82 Chip1 T1D_1 T1D TGTGCCAGCAGTGATTGGCGGGAAGACACCGGGGAGCTGTTTTTT CASSDWREDTGELFF TRBV25-1*01 TRBJ2-2*01 26.0 1207.0 _CASSDWREDTGELFF 1 3286 CVB3-P3A CVB 0.41 77 NEG 75 3211 6 CoxsackievirusB P3A GIIYIIYKL central memory T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*02:01 B2M MHCI -4827 chip0420_744204 -3.1 8.61 Chip1 healthy_1 healthy _ 6746 6532 PGT-178 PGT 0.44 1480 PGT-178 82 6450 2 HomoSapiens PGT LLAGIGTVPI Naive T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*02:01 B2M MHCI -4828 chip0420_62139 13.45 7.53 Chip1 T1D_1 T1D _ 6746 1909 EBV-BRLF1 EBV 0.83 1264 NEG 82 1827 10 EBV BRLF1 YVLDHLIVV effector memory T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*02:01 B2M MHCI -4829 chip0420_590116 11.28 7.54 Chip1 T1D_1 T1D _ 6746 3257 EBV-LMP2-FLY EBV 0.86 355 EBV-LMP2-FLY 114 3143 6 EBV LMP2 FLYALALLL central memory T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*02:01 B2M MHCI -4830 chip0420_738341 9.78 10.28 Chip1 T1D_2 T1D _ 6746 3890 EBV-BLMF1 EBV 0.7 2531 NEG 64 3826 9 EBV BLMF1 GLCTLVAML effector memory T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*02:01 B2M MHCI -4831 chip0420_675932 7.27 13.95 Chip1 T1D_1 T1D TGTGGCACTCAAGAGAATGACAGCTGGGGGAAATTGCAGTTT CGTQENDSWGKLQF TRAV30*01 TRAJ24*01 6.0 433.0 CGTQENDSWGKLQF_ 2 2756 M1 FLU 0.57 1250 NEG 72 2684 7 InfluenzaA M1 GILGFVFTL transitional T cells between effector and memory populations PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*02:01 B2M MHCI -4832 chip0420_722463 15.27 9.21 Chip1 T1D_1 T1D TGCGGCACAGAGGAACCTAACGACTACAAGCTCAGCTTT CGTEEPNDYKLSF TRAV30*01 TRAJ20*01 2.0 157.0 CGTEEPNDYKLSF_ 22 3611 EBV-BLMF1 EBV 0.58 2531 EBV-BLMF1 77 3534 12 EBV BLMF1 GLCTLVAML effector T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*02:01 B2M MHCI -4833 chip0420_152130 12.72 7.02 Chip1 T1D_2 T1D TGTGCCAGCAGTGGAGGGGCGGTCGCGCCGAGTGAGCAGTTCTTC CASSGGAVAPSEQFF TRBV2*01 TRBJ2-1*01 30.0 1632.0 _CASSGGAVAPSEQFF 6 3305 EBV-BLMF1 EBV 0.44 2531 NEG 82 3223 10 EBV BLMF1 GLCTLVAML effector memory T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*02:01 B2M MHCI -4834 chip0420_794627 11.21 10.94 Chip1 T1D_1 T1D _ 6746 5114 EBV-BLMF1 EBV 0.69 2531 NEG 65 5049 9 EBV BLMF1 GLCTLVAML effector memory T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*02:01 B2M MHCI -4835 chip0420_583569 10.42 10.16 Chip1 T1D_1 T1D _ 6746 3329 EBV-BLMF1 EBV 0.71 2531 NEG 79 3250 9 EBV BLMF1 GLCTLVAML effector memory T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*02:01 B2M MHCI -4836 chip0420_438700 0.47 8.64 Chip1 healthy_1 healthy TGTGCCACCAGTGACCACCGCCTCGTAATGAGCAGTTCTTC CATSDHcg?PRNEQFF TRBV24-1*01 TRBJ2-1*01 9.0 829.0 _CATSDHcg?PRNEQFF 1 5306 PGT-178 PGT 0.65 1480 PGT-178 75 5231 4 HomoSapiens PGT LLAGIGTVPI Naive T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*02:01 B2M MHCI -4837 chip0420_791744 15.08 11.28 Chip1 T1D_1 T1D _ 6746 1746 EBV-BLMF1 EBV 1.0 2531 NEG 76 1670 12 EBV BLMF1 GLCTLVAML effector T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*02:01 B2M MHCI -4838 chip0420_836927 8.18 13.81 Chip1 healthy_1 healthy _ 6746 2326 M1 FLU 0.75 1250 M1 78 2248 7 InfluenzaA M1 GILGFVFTL transitional T cells between effector and memory populations PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*02:01 B2M MHCI -4839 chip0420_871859 12.33 10.46 Chip1 T1D_1 T1D _ 6746 3063 EBV-BRLF1 EBV 0.75 1264 NEG 84 2979 9 EBV BRLF1 YVLDHLIVV effector memory T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*02:01 B2M MHCI -4840 chip0420_759332 6.11 10.28 Chip1 T1D_1 T1D TGTGCCAGCAGTGTGCAGGGAGGTAACTATGGCTACACCTTC CASSVQGGNYGYTF TRBV6-1*01 TRBJ1-2*01 13.0 512.0 _CASSVQGGNYGYTF 5 4672 EBV-LMP2-FLY EBV 0.89 355 EBV-LMP2-FLY 75 4597 6 EBV LMP2 FLYALALLL central memory T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*02:01 B2M MHCI -4841 chip0420_821575 12.52 7.65 Chip1 T1D_1 T1D _ 6746 2744 EBV-LMP2-FLY EBV 1.0 355 NEG 76 2668 10 EBV LMP2 FLYALALLL effector memory T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*02:01 B2M MHCI -4842 chip0420_429757 5.16 10.19 Chip1 healthy_2 healthy _ 6746 3746 PGT-178 PGT 0.5 1480 NEG 64 3682 6 HomoSapiens PGT LLAGIGTVPI central memory T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*02:01 B2M MHCI -4843 chip0420_791385 15.44 10.75 Chip1 T1D_2 T1D TGTGCCCTGAACACCGACAAGCTCATCTTT CALNTDKLIF TRAV8-1*01 TRAJ34*01 27.0 2544.0 CALNTDKLIF_ 4 2129 EBV-BRLF1 EBV 0.89 1264 NEG 74 2055 12 EBV BRLF1 YVLDHLIVV effector T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*02:01 B2M MHCI -4844 chip0420_661220 4.78 10.31 Chip1 healthy_1 healthy _ 6746 2039 M1 FLU 0.95 1250 M1 72 1967 6 InfluenzaA M1 GILGFVFTL central memory T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*02:01 B2M MHCI -4845 chip0420_290060 8.03 8.02 Chip1 T1D_2 T1D TGCGCCAGCAGTGAGGACGGTATGAACACTGAAGCTTTCTTT CASSEDGMNTEAFF TRBV10-2*01 TRBJ1-1*01 54.0 2216.0 _CASSEDGMNTEAFF 10 6254 EBV-LMP2A EBV 0.82 700 EBV-LMP2A 76 6178 8 EBV LMP2A CLGGLLTMV effector memory T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*02:01 B2M MHCI -4846 chip0420_17690 13.3 9.57 Chip1 T1D_2 T1D TGCAGCGTGGGGACAGGGGGAACTAATGAAAAACTGTTTTTT CSVGTGGTNEKLFF TRBV29-1*01 TRBJ1-4*01 50.0 2067.0 _CSVGTGGTNEKLFF 638 2584 EBV-BLMF1 EBV 0.8 2531 NEG 67 2517 10 EBV BLMF1 GLCTLVAML effector memory T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*02:01 B2M MHCI -4847 chip0420_600743 12.41 9.42 Chip1 T1D_1 T1D _ 6746 2185 EBV-BRLF1 EBV 0.67 1264 NEG 83 2102 10 EBV BRLF1 YVLDHLIVV effector memory T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*02:01 B2M MHCI -4848 chip0420_314056 5.96 12.47 Chip1 T1D_1 T1D _ 6746 4527 M1 FLU 0.73 1250 M1 76 4451 7 InfluenzaA M1 GILGFVFTL transitional T cells between effector and memory populations PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*02:01 B2M MHCI -4849 chip0420_640678 13.82 11.84 Chip1 T1D_1 T1D _ 6746 2188 EBV-BLMF1 EBV 0.89 2531 NEG 71 2117 12 EBV BLMF1 GLCTLVAML effector T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*02:01 B2M MHCI -4850 chip0420_160612 12.74 6.6 Chip1 T1D_2 T1D TGTGCCAGCAGCTCGGGACTAGTCGCCCCCGGGGAGCTGTTTTTT CASSSGLVAPGELFF TRBV2*01 TRBJ2-2*01 9.0 355.0 _CASSSGLVAPGELFF 133 3324 EBV-BLMF1 EBV 0.67 2531 NEG 77 3247 10 EBV BLMF1 GLCTLVAML effector memory T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*02:01 B2M MHCI -4851 chip0420_157229 10.61 13.75 Chip1 healthy_1 healthy _ 6746 1691 M1 FLU 1.0 1250 NEG 68 1623 11 InfluenzaA M1 GILGFVFTL effector T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*02:01 B2M MHCI -4852 chip0420_811809 15.46 10.39 Chip1 T1D_1 T1D TGTGCCAGCAGCACGGGACAGCTATCGAACACCGGGGAGCTGTTTTTT CASSTGQLSNTGELFF TRBV9*01 TRBJ2-2*01 11.0 437.0 _CASSTGQLSNTGELFF 82 3079 EBV-BLMF1 EBV 0.71 2531 NEG 73 3006 12 EBV BLMF1 GLCTLVAML effector T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*02:01 B2M MHCI -4853 chip0420_593028 5.57 12.45 Chip1 healthy_1 healthy _ 6746 4817 M1 FLU 0.85 1250 M1 67 4750 7 InfluenzaA M1 GILGFVFTL transitional T cells between effector and memory populations PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*02:01 B2M MHCI -4854 chip0420_13966 7.33 14.15 Chip1 T1D_1 T1D TGTGCCGTGAGTGATCGGGATGGCGGCTTCAAAACTATCTTT CAVSDRDGGFKTIF TRAV8-4*01 TRAJ9*01 45.0 2094.0 TGTGCCAGTAGTATAAATGGGGGCCGGAGGGATGGCTACACCTTC CASSINGGRRDGYTF TRBV19*01 TRBJ1-2*01 16.0 555.0 CAVSDRDGGFKTIF_CASSINGGRRDGYTF 5 1922 M1 FLU 0.75 1250 NEG 86 1836 7 InfluenzaA M1 GILGFVFTL transitional T cells between effector and memory populations PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*02:01 B2M MHCI -4855 chip0420_235946 6.79 12.19 Chip1 T1D_2 T1D TGTGTGGTTCAATGGACAACCGGCACTGCCAGTAAACTCACCTTT CVVQWTTGTASKLTF TRAV12-1*01 TRAJ44*01 30.0 2047.0 CVVQWTTGTASKLTF_ 1 3282 IGRP-228-236 IGRP 0.95 16 IGRP-228-236 72 3210 7 HomoSapiens IGRP LNIDLLWSV transitional T cells between effector and memory populations PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*02:01 B2M MHCI -4856 chip0420_709232 6.47 13.08 Chip1 healthy_2 healthy _ 6746 3720 M1 FLU 0.84 1250 M1 71 3649 7 InfluenzaA M1 GILGFVFTL transitional T cells between effector and memory populations PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*02:01 B2M MHCI -4857 chip0420_250083 10.04 9.87 Chip1 T1D_1 T1D _ 6746 3281 EBV-BRLF1 EBV 0.87 1264 EBV-BRLF1 71 3210 9 EBV BRLF1 YVLDHLIVV effector memory T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*02:01 B2M MHCI -4858 chip0420_817403 9.41 11.3 Chip1 healthy_1 healthy _ 6746 4620 M1 FLU 1.0 1250 NEG 57 4563 9 InfluenzaA M1 GILGFVFTL effector memory T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*02:01 B2M MHCI -4859 chip0420_877454 5.82 12.24 Chip1 healthy_2 healthy _ 6746 3771 CVB3-P3A CVB 0.8 77 NEG 72 3699 7 CoxsackievirusB P3A GIIYIIYKL transitional T cells between effector and memory populations PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*02:01 B2M MHCI -4860 chip0420_586913 -3.8 8.35 Chip1 healthy_1 healthy _ 6746 5011 PGT-178 PGT 0.77 1480 PGT-178 89 4922 2 HomoSapiens PGT LLAGIGTVPI Naive T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*02:01 B2M MHCI -4861 chip0420_267861 11.6 11.12 Chip1 T1D_3 T1D _ 6746 2342 BZLF1-190-197 EBV 0.76 2156 BZLF1-190-197 77 2265 9 EBV BZLF1 RAKFKQLL effector memory T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-B*08:01 B2M MHCI -4862 chip0420_562862 10.56 7.38 Chip1 T1D_1 T1D TGTGCTCTCCCTTCTGGTGGCTACAATAAGCTGATTTTT CALPSGGYNKLIF TRAV16*01 TRAJ4*01 1.0 115.0 CALPSGGYNKLIF_ 2 4678 EBV-LMP2-FLY EBV 0.75 355 NEG 94 4584 10 EBV LMP2 FLYALALLL effector memory T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*02:01 B2M MHCI -4863 chip0420_273906 -1.83 10.92 Chip1 T1D_1 T1D _ 6746 3924 GP160-311-320 HIV 0.7 109 NEG 88 3836 3 HIV-1 GP160 RGPGRAFVTI Naive T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*02:01 B2M MHCI -4864 chip0420_73605 11.87 13.42 Chip1 T1D_1 T1D TGCAGCGTCGGCTCCAGGGGAACTAATGAAAAACTGTTTTTT CSVGSRGTNEKLFF TRBV29-1*01 TRBJ1-4*01 60.0 3341.0 _CSVGSRGTNEKLFF 283 1507 EBV-BLMF1 EBV 0.8 2531 NEG 58 1449 11 EBV BLMF1 GLCTLVAML effector T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*02:01 B2M MHCI -4865 chip0420_660198 8.21 13.82 Chip1 T1D_3 T1D _ 6746 2471 NP44-52 FLU 0.77 474 NP44-52 86 2385 7 InfluenzaA NP CTELKLSDY transitional T cells between effector and memory populations PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*01:01 B2M MHCI -4866 chip0420_827143 -3.89 12.77 Chip1 healthy_1 healthy _ 6746 3078 MART1-ALA MART1 1.0 269 NEG 85 2993 1 HomoSapiens MART1 ALAGIGILTV Naive T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*02:01 B2M MHCI -4867 chip0420_558802 9.08 7.68 Chip1 T1D_3 T1D _ 6746 5434 BZLF1-190-197 EBV 0.71 2156 NEG 74 5360 8 EBV BZLF1 RAKFKQLL effector memory T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-B*08:01 B2M MHCI -4868 chip0420_452180 10.9 11.98 Chip1 T1D_3 T1D _ 6746 3194 BZLF1-190-197 EBV 0.78 2156 NEG 75 3119 9 EBV BZLF1 RAKFKQLL effector memory T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-B*08:01 B2M MHCI -4869 chip0420_213792 7.39 12.12 Chip1 T1D_1 T1D TGTGCCAGCAGTTATATGCCCTGTGGACTAGCGAAGGACGGGGAGCTGTTTTTT CASSYMPCGLAKDGELFF TRBV6-9*01 TRBJ2-2*01 20.0 325.0 _CASSYMPCGLAKDGELFF 1 3846 HCV-K1Y HCV 0.44 15 NEG 74 3772 7 HCV POL YLVALGINAV transitional T cells between effector and memory populations PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*02:01 B2M MHCI -4870 chip0420_417665 -4.01 11.73 Chip1 healthy_2 healthy TGTATGGTGAACACTGCAGGCAAGTCTGCCTTT CMVNTAGKSAF TRAV12-1*01 TRAJ27*01 26.0 2126.0 TGTGCCAGCAGCACGATAGTTGGGGGGGGAACGGACTATGGCTACACCTTC CASSTIVGGGTDYGYTF TRBV2*01 TRBJ1-2*01 1.0 90.0 CMVNTAGKSAF_CASSTIVGGGTDYGYTF 1 3243 NP140-148 FLU 1.0 102 NP140-148 77 3166 1 InfluenzaA NP HSNLNDATY Naive T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*01:01 B2M MHCI -4871 chip0420_393968 12.53 13.74 Chip1 T1D_2 T1D _ 6746 1142 EBV-BRLF1 EBV 1.0 1264 NEG 78 1064 11 EBV BRLF1 YVLDHLIVV effector T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*02:01 B2M MHCI -4872 chip0420_1880 9.85 10.02 Chip1 T1D_1 T1D TGCAGCGTCGGCTCCAGGGGAACTAATGAAAAACTGTTTTTT CSVGSRGTNEKLFF TRBV29-1*01 TRBJ1-4*01 56.0 2827.0 _CSVGSRGTNEKLFF 283 4194 EBV-BLMF1 EBV 0.62 2531 NEG 80 4114 9 EBV BLMF1 GLCTLVAML effector memory T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*02:01 B2M MHCI -4873 chip0420_699729 6.04 13.84 Chip1 healthy_1 healthy TGTGCAGGAGCTCAAGATAATGCAGGCAACATGCTCACCTTT CAGAQDNAGNMLTF TRAV27*01 TRAJ39*01 24.0 2028.0 CAGAQDNAGNMLTF_ 1 4960 M1 FLU 0.9 1250 M1 92 4868 7 InfluenzaA M1 GILGFVFTL transitional T cells between effector and memory populations PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*02:01 B2M MHCI -4874 chip0420_391522 11.84 13.09 Chip1 T1D_2 T1D TGCAGCGTTGGGGGCAGCTTCTATGGCTACACCTTC CSVGGSFYGYTF TRBV29-1*01 TRBJ1-2*01 2.0 109.0 _CSVGGSFYGYTF 42 1529 EBV-BLMF1 EBV 0.86 2531 NEG 68 1461 11 EBV BLMF1 GLCTLVAML effector T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*02:01 B2M MHCI -4875 chip0420_96900 13.79 9.47 Chip1 T1D_1 T1D TGTGCCAGCAGCCAAAGCCCGGGTGGTACGCAGTATTTT CASSQSPGGTQYF TRBV14*01 TRBJ2-3*01 8.0 310.0 _CASSQSPGGTQYF 94 3249 EBV-BLMF1 EBV 0.83 2531 NEG 77 3172 12 EBV BLMF1 GLCTLVAML effector T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*02:01 B2M MHCI -4876 chip0420_848783 6.04 12.66 Chip1 T1D_1 T1D TGTGCTTTCATGACGAATGCTGGTGGTACTAGCTATGGAAAGCTGACATTT CAFMTNAGGTSYGKLTF TRAV38-1*01 TRAJ52*01 1.0 106.0 CAFMTNAGGTSYGKLTF_ 2 4781 M1 FLU 0.57 1250 M1 84 4697 7 InfluenzaA M1 GILGFVFTL transitional T cells between effector and memory populations PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*02:01 B2M MHCI -4877 chip0420_677979 6.32 12.63 Chip1 healthy_1 healthy _ 6746 5540 M1 FLU 0.77 1250 M1 60 5480 7 InfluenzaA M1 GILGFVFTL transitional T cells between effector and memory populations PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*02:01 B2M MHCI -4878 chip0420_502765 6.0 13.86 Chip1 healthy_1 healthy TGCGCCAGCAGCGCGGGACAGGGACTTCCCTACGAGCAGTACTTC CASSAGQGLPYEQYF TRBV5-1*01 TRBJ2-7*01 2.0 45.0 _CASSAGQGLPYEQYF 9 5381 M1 FLU 0.88 1250 M1 64 5317 7 InfluenzaA M1 GILGFVFTL transitional T cells between effector and memory populations PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*02:01 B2M MHCI -4879 chip0420_776477 11.46 13.29 Chip1 T1D_2 T1D _ 6746 1928 EBV-BLMF1 EBV 0.75 2531 NEG 89 1839 11 EBV BLMF1 GLCTLVAML effector T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*02:01 B2M MHCI -4880 chip0420_469635 8.57 11.64 Chip1 T1D_2 T1D _ 6746 2840 EBV-BRLF1 EBV 0.62 1264 NEG 72 2768 7 EBV BRLF1 YVLDHLIVV transitional T cells between effector and memory populations PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*02:01 B2M MHCI -4881 chip0420_131625 10.32 7.09 Chip1 T1D_3 T1D CCCATCGTCAGAGCCGGACGTCCCCGCTGGGGGCCCTTGCCGTTT PIVRAGRPRWGPLPF TRAV26-1*01 TRAJ24*01 7.0 72.0 TGCGCCGCCAGAGCCGGGGGTGACAGCTGCGGGCACTTGCAGTCT CAARAGGDSCGHLQS TRAV26-1*01 TRAJ24*01 6.0 873.0 0.24 TGTGCCAGCAGTGATTTTTTGAACACTGAAGCTTTCTTT CASSDFLNTEAFF TRBV27*01 TRBJ1-1*01 5.0 284.0 PIVRAGRPRWGPLPF_CASSDFLNTEAFF 1 4197 BZLF1-190-197 EBV 0.58 2156 NEG 79 4118 10 EBV BZLF1 RAKFKQLL effector memory T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-B*08:01 B2M MHCI -4882 chip0420_310757 15.64 8.84 Chip1 T1D_1 T1D TGTGCCAGCAGTCCGGACCAAACTAGCTCCTACAATGAGCAGTTCTTC CASSPDQTSSYNEQFF TRBV27*01 TRBJ2-1*01 70.0 3904.0 _CASSPDQTSSYNEQFF 47 2842 EBV-BRLF1 EBV 0.79 1264 EBV-BRLF1 82 2760 8 EBV BRLF1 YVLDHLIVV effector memory T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*02:01 B2M MHCI -4883 chip0420_617832 -2.63 9.07 Chip1 T1D_1 T1D TGTGCTGTCAGTCCGAATTATGGAGGAAGCCAAGGAAATCTCATCTTT CAVSPNYGGSQGNLIF TRAV41*01 TRAJ42*01 1.0 59.0 CAVSPNYGGSQGNLIF_ 1 5011 ZNT8-153-161 ZNT8 0.85 41 ZNT8-153-161 66 4945 2 HomoSapiens ZNT8 VVTGVLVYL Naive T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*02:01 B2M MHCI -4884 chip0420_130654 -2.79 14.0 Chip1 T1D_1 T1D _ 6746 2618 MART1-A28L MART1 0.62 84 MART1-A28L 62 2556 1 HomoSapiens MART1 ALGIGILTV Naive T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*02:01 B2M MHCI -4885 chip0420_761648 10.13 11.14 Chip1 T1D_1 T1D _ 6746 4093 EBV-BLMF1 EBV 0.54 2531 NEG 81 4012 9 EBV BLMF1 GLCTLVAML effector memory T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*02:01 B2M MHCI -4886 chip0420_737855 -3.47 8.68 Chip1 healthy_1 healthy TGTGCCAGCAGCTCAGAGGATTTTACAGGGATTACCGGAAACACCATATACTTT CASSSEDFTGITGNTIYF TRBV11-1*01 TRBJ1-3*01 31.0 885.0 _CASSSEDFTGITGNTIYF 1 5859 PGT-178 PGT 0.52 1480 NEG 72 5787 2 HomoSapiens PGT LLAGIGTVPI Naive T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*02:01 B2M MHCI -4887 chip0420_573388 12.15 9.19 Chip1 T1D_1 T1D TGCAGCGTGGGGACAGGGGGAACTAATGAAAAACTGTTTTTT CSVGTGGTNEKLFF TRBV29-1*01 TRBJ1-4*01 4.0 67.0 _CSVGTGGTNEKLFF 638 2613 EBV-BLMF1 EBV 0.89 2531 NEG 86 2527 10 EBV BLMF1 GLCTLVAML effector memory T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*02:01 B2M MHCI -4888 chip0420_344293 8.11 13.71 Chip1 T1D_1 T1D _ 6746 2335 M1 FLU 0.56 1250 NEG 72 2263 7 InfluenzaA M1 GILGFVFTL transitional T cells between effector and memory populations PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*02:01 B2M MHCI -4889 chip0420_125334 5.58 8.94 Chip1 T1D_2 T1D _ 6746 4187 EBV-BLMF1 EBV 0.6 2531 NEG 79 4108 6 EBV BLMF1 GLCTLVAML central memory T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*02:01 B2M MHCI -4890 chip0420_82835 -3.44 12.43 Chip1 T1D_1 T1D _ 6746 3642 PGT-178 PGT 0.68 1480 PGT-178 74 3568 1 HomoSapiens PGT LLAGIGTVPI Naive T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*02:01 B2M MHCI -4891 chip0420_439031 -3.31 13.59 Chip1 healthy_1 healthy TGTGCCAGCAGTTTAGTGGGAGTGAACACCGGGGAGCTGTTTTTT CASSLVGVNTGELFF TRBV28*01 TRBJ2-2*01 20.0 864.0 _CASSLVGVNTGELFF 1 3007 MART1-ALA MART1 0.67 269 NEG 69 2938 1 HomoSapiens MART1 ALAGIGILTV Naive T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*02:01 B2M MHCI -4892 chip0420_351792 -0.08 8.88 Chip1 healthy_1 healthy TGTGCAGCATACTGCGGTTAACACCGACAAGCCCATCTTT CAAYCGta??acTDKPIF TRAV29/DV5*01 TRAJ34*01 36.0 2226.0 TGTGCCAGCAGTTTCGGTGACAGGGGGCGCGGTGAAAAACTGTTTTTT CASSFGDRGRGEKLFF TRBV28*01 TRBJ1-4*01 43.0 1962.0 CAAYCGta??acTDKPIF_CASSFGDRGRGEKLFF 1 5787 PGT-178 PGT 0.88 1480 PGT-178 81 5706 4 HomoSapiens PGT LLAGIGTVPI Naive T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*02:01 B2M MHCI -4893 chip0420_691643 9.21 12.55 Chip1 healthy_1 healthy _ 6746 3155 M1 FLU 0.65 1250 M1 63 3092 6 InfluenzaA M1 GILGFVFTL central memory T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*02:01 B2M MHCI -4894 chip0420_192561 10.84 8.4 Chip1 T1D_1 T1D _ 6746 3863 EBV-BLMF1 EBV 0.86 2531 NEG 72 3791 10 EBV BLMF1 GLCTLVAML effector memory T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*02:01 B2M MHCI -4895 chip0420_244197 5.99 12.34 Chip1 healthy_1 healthy _ 6746 5410 M1 FLU 0.86 1250 NEG 59 5351 7 InfluenzaA M1 GILGFVFTL transitional T cells between effector and memory populations PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*02:01 B2M MHCI -4896 chip0420_88814 -3.89 12.53 Chip1 healthy_1 healthy _ 6746 3147 PGT-178 PGT 0.59 1480 PGT-178 65 3082 1 HomoSapiens PGT LLAGIGTVPI Naive T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*02:01 B2M MHCI -4897 chip0420_59533 -3.64 12.91 Chip1 T1D_1 T1D CGCCGCGTGGGGCCCGGGGGCACTAATGACAAACTTTTTTT RRVGPGgg?H**QTFF TRBV29-1*01 TRBJ1-4*01 5.0 32.0 _RRVGPGgg?H**QTFF 1 3566 ROTA-VP3 ROTA 0.55 41 NEG 77 3489 1 RotavirusA VP3 YLLPGWKL Naive T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*02:01 B2M MHCI -4898 chip0420_111164 12.63 8.74 Chip1 T1D_2 T1D _ 6746 1848 EBV-BRLF1 EBV 0.97 1264 EBV-BRLF1 92 1756 10 EBV BRLF1 YVLDHLIVV effector memory T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*02:01 B2M MHCI -4899 chip0420_498532 12.82 11.63 Chip1 T1D_1 T1D _ 6746 2724 EBV-BRLF1 EBV 0.97 1264 EBV-BRLF1 66 2658 9 EBV BRLF1 YVLDHLIVV effector memory T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*02:01 B2M MHCI -4900 chip0420_496033 -2.75 14.63 Chip1 T1D_1 T1D TGTGCCAGCAGATTCGGGACAGGAGGTTACGAGCAGTACTTC CASRFGTGGYEQYF TRBV28*01 TRBJ2-7*01 11.0 473.0 _CASRFGTGGYEQYF 1 3042 INS-6-16 INS 0.87 20 INS-6-16 65 2977 1 HomoSapiens INS RLLPLLALLAL Naive T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*02:01 B2M MHCI -4901 chip0420_242781 -0.62 8.92 Chip1 healthy_1 healthy TGTGCTGGGCGTAGGGAGGTAGCAACTATAAACTGACATTT CAGRREgt?SNYKLTF TRAV35*01 TRAJ53*01 1.0 41.0 CAGRREgt?SNYKLTF_ 1 4328 PGT-178 PGT 0.85 1480 PGT-178 63 4265 4 HomoSapiens PGT LLAGIGTVPI Naive T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*02:01 B2M MHCI -4902 chip0420_603250 6.3 12.46 Chip1 healthy_1 healthy TGTGCCAGTAGTATAAGAAGTTCCTACGAGCAGTACTTC CASSIRSSYEQYF TRBV19*01 TRBJ2-7*01 16.0 786.0 _CASSIRSSYEQYF 36 3038 M1 FLU 0.83 1250 M1 61 2977 7 InfluenzaA M1 GILGFVFTL transitional T cells between effector and memory populations PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*02:01 B2M MHCI -4903 chip0420_422022 6.95 13.36 Chip1 T1D_1 T1D TGTGCCAGTAGTGTCAGGGCAGGAGAGACCCAGTACTTC CASSVRAGETQYF TRBV19*01 TRBJ2-5*01 1.0 46.0 _CASSVRAGETQYF 23 4111 M1 FLU 0.95 1250 M1 85 4026 7 InfluenzaA M1 GILGFVFTL transitional T cells between effector and memory populations PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*02:01 B2M MHCI -4904 chip0420_237724 13.06 8.22 Chip1 T1D_1 T1D TGTGCCAGCAGTGACGGTCGGGTCCACCCGGGGACCCAGTACTTC CASSDGRVHPGTQYF TRBV2*01 TRBJ2-5*01 19.0 911.0 _CASSDGRVHPGTQYF 24 4638 EBV-BLMF1 EBV 0.67 2531 NEG 94 4544 10 EBV BLMF1 GLCTLVAML effector memory T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*02:01 B2M MHCI -4905 chip0420_868248 0.41 9.0 Chip1 T1D_1 T1D _ 6746 3056 ROTA-VP3 ROTA 0.8 41 NEG 69 2987 4 RotavirusA VP3 YLLPGWKL Naive T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*02:01 B2M MHCI -4906 chip0420_732131 12.64 11.34 Chip1 T1D_2 T1D TGTGCCGTGAATAGCAACTATCAGTTAATCTGG CAVNSNYQLIW TRAV8-1*01 TRAJ33*01 13.0 1550.0 TGTGCCAGCAGTTTATACTACAATGAGCAGTTCTTC CASSLYYNEQFF TRBV12-3*01,TRBV12-4*01 TRBJ2-1*01 16.0 1294.0 CAVNSNYQLIW_CASSLYYNEQFF 1 1886 EBV-BRLF1 EBV 0.46 1264 NEG 81 1805 9 EBV BRLF1 YVLDHLIVV effector memory T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*02:01 B2M MHCI -4907 chip0420_328701 13.01 13.73 Chip1 T1D_2 T1D _ 6746 1039 EBV-BLMF1 EBV 0.71 2531 NEG 70 969 11 EBV BLMF1 GLCTLVAML effector T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*02:01 B2M MHCI -4908 chip0420_290569 12.47 13.49 Chip1 T1D_1 T1D _ 6746 1451 EBV-BLMF1 EBV 1.0 2531 NEG 73 1378 11 EBV BLMF1 GLCTLVAML effector T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*02:01 B2M MHCI -4909 chip0420_469544 11.86 13.79 Chip1 T1D_2 T1D _ 6746 1019 EBV-BRLF1 EBV 1.0 1264 NEG 78 941 11 EBV BRLF1 YVLDHLIVV effector T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*02:01 B2M MHCI -4910 chip0420_94898 11.76 8.05 Chip1 T1D_2 T1D TGTGCTGTGAGAGACGACAGAGATGCCAAGATCATCTTT CAVRDDRDAKIIF TRAV3*01 TRAJ30*01 36.0 2084.0 CAVRDDRDAKIIF_ 1 2869 EBV-BLMF1 EBV 0.73 2531 NEG 87 2782 10 EBV BLMF1 GLCTLVAML effector memory T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*02:01 B2M MHCI -4911 chip0420_705432 7.42 12.44 Chip1 T1D_2 T1D TGCGCCAGCAGAGCGGGAGCCGGGGGTACGCAGTATTTT CASRAGAGGTQYF TRBV10-2*01 TRBJ2-3*01 16.0 844.0 _CASRAGAGGTQYF 1 2555 EBV-BLMF1 EBV 1.0 2531 NEG 70 2485 7 EBV BLMF1 GLCTLVAML transitional T cells between effector and memory populations PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*02:01 B2M MHCI -4912 chip0420_775807 11.98 7.33 Chip1 T1D_3 T1D TGTGCCAGCAGTTACGGCCCTAGCGGACACGCCTCGATTTCGAGGGAGCAGTACTTC CASSYGPSGHASISREQYF TRBV6-2*01,TRBV6-3*01 TRBJ2-7*01 38.0 1186.0 _CASSYGPSGHASISREQYF 1 2399 EBNA3A-158-166 EBV 0.84 444 EBNA3A-158-166 69 2330 10 EBV EBNA3A QAKWRLQTL effector memory T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-B*08:01 B2M MHCI -4913 chip0420_614045 7.07 12.57 Chip1 healthy_1 healthy _ 6746 3685 M1 FLU 0.56 1250 M1 69 3616 7 InfluenzaA M1 GILGFVFTL transitional T cells between effector and memory populations PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*02:01 B2M MHCI -4914 chip0420_481848 0.01 3.78 Chip1 healthy_1 healthy _ 6746 3199 HCV-K1Y HCV 0.5 15 NEG 68 3131 5 HCV POL YLVALGINAV natural killer-like T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*02:01 B2M MHCI -4915 chip0420_53043 11.92 8.92 Chip1 T1D_1 T1D _ 6746 2770 EBV-BLMF1 EBV 0.69 2531 NEG 60 2710 10 EBV BLMF1 GLCTLVAML effector memory T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*02:01 B2M MHCI -4916 chip0420_226399 10.26 11.51 Chip1 T1D_3 T1D TGTGCCGTGAATCCCCCGGTCGCGGGAGGAGGAAACAAACTCACCTTT CAVNPPVAGGGNKLTF TRAV8-1*01 TRAJ10*01 58.0 2164.0 CAVNPPVAGGGNKLTF_ 1 3144 BZLF1-190-197 EBV 0.64 2156 NEG 67 3077 9 EBV BZLF1 RAKFKQLL effector memory T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-B*08:01 B2M MHCI -4917 chip0420_143076 6.28 13.17 Chip1 T1D_1 T1D _ 6746 3719 M1 FLU 0.8 1250 M1 74 3645 7 InfluenzaA M1 GILGFVFTL transitional T cells between effector and memory populations PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*02:01 B2M MHCI -4918 chip0420_12811 11.08 10.53 Chip1 T1D_1 T1D TGCAGCGTCGGCTCCAGGGGAACTAATGAAAAACTGTTTTTT CSVGSRGTNEKLFF TRBV29-1*01 TRBJ1-4*01 9.0 452.0 _CSVGSRGTNEKLFF 283 3940 EBV-BLMF1 EBV 0.6 2531 NEG 86 3854 9 EBV BLMF1 GLCTLVAML effector memory T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*02:01 B2M MHCI -4919 chip0420_603960 11.7 9.27 Chip1 T1D_2 T1D _ 6746 2546 EBV-BRLF1 EBV 1.0 1264 NEG 76 2470 10 EBV BRLF1 YVLDHLIVV effector memory T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*02:01 B2M MHCI -4920 chip0420_460766 7.64 10.83 Chip1 healthy_1 healthy TGTGCTGTGGATGGAAGCCAAGGAAACCTCATCTC CAVDGag?PRKPHL TRAV8-3*01 TRAJ42*01 6.0 437.0 CAVDGag?PRKPHL_ 1 5216 M1 FLU 0.66 1250 M1 79 5137 7 InfluenzaA M1 GILGFVFTL transitional T cells between effector and memory populations PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*02:01 B2M MHCI -4921 chip0420_63350 11.84 13.85 Chip1 T1D_1 T1D _ 6746 1503 EBV-BLMF1 EBV 0.67 2531 NEG 65 1438 11 EBV BLMF1 GLCTLVAML effector T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*02:01 B2M MHCI -4922 chip0420_676743 6.02 13.56 Chip1 T1D_1 T1D TGTGCCAGTAGTTTTGGAGCCGGGGAGCTGTTTTTT CASSFGAGELFF TRBV19*01 TRBJ2-2*01 2.0 105.0 _CASSFGAGELFF 5 5333 M1 FLU 0.83 1250 M1 64 5269 7 InfluenzaA M1 GILGFVFTL transitional T cells between effector and memory populations PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*02:01 B2M MHCI -4923 chip0420_575946 5.74 12.63 Chip1 T1D_1 T1D _ 6746 4405 M1 FLU 0.95 1250 M1 76 4329 7 InfluenzaA M1 GILGFVFTL transitional T cells between effector and memory populations PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*02:01 B2M MHCI -4924 chip0420_193218 12.63 10.71 Chip1 T1D_1 T1D TGTGCCAGCAGCCCAGTTAGCGGGTCAACCTACGAGCAGTACTTC CASSPVSGSTYEQYF TRBV3-1*01 TRBJ2-7*01 4.0 187.0 _CASSPVSGSTYEQYF 80 2699 EBV-BLMF1 EBV 0.85 2531 NEG 85 2614 9 EBV BLMF1 GLCTLVAML effector memory T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*02:01 B2M MHCI -4925 chip0420_140231 11.23 10.99 Chip1 T1D_1 T1D TGCAGCGTCGGCTCCAGGGGAACTAATGAAAAACTGTTTTTT CSVGSRGTNEKLFF TRBV29-1*01 TRBJ1-4*01 108.0 5500.0 _CSVGSRGTNEKLFF 283 3123 EBV-BLMF1 EBV 0.62 2531 NEG 90 3033 9 EBV BLMF1 GLCTLVAML effector memory T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*02:01 B2M MHCI -4926 chip0420_93075 10.97 12.44 Chip1 T1D_2 T1D TGTGCCAGCAGCCAATCCCCCGGGGGGCTAGCTTTCTTT CASSQSPGGLAFF TRBV14*01 TRBJ1-1*01 1.0 35.0 _CASSQSPGGLAFF 4 2344 EBV-BLMF1 EBV 0.67 2531 NEG 89 2255 11 EBV BLMF1 GLCTLVAML effector T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*02:01 B2M MHCI -4927 chip0420_376268 12.59 12.84 Chip1 T1D_2 T1D TGCAGCGTTGACCAAAGGACAGGGCAAAAGAAGAACTATGGCTACACCTTC CSVDQRTGQKKNYGYTF TRBV29-1*01 TRBJ1-2*01 17.0 867.0 _CSVDQRTGQKKNYGYTF 40 1735 EBV-BLMF1 EBV 1.0 2531 NEG 78 1657 10 EBV BLMF1 GLCTLVAML effector memory T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*02:01 B2M MHCI -4928 chip0420_15236 10.92 12.38 Chip1 T1D_2 T1D _ 6746 2151 EBV-BLMF1 EBV 1.0 2531 NEG 66 2085 11 EBV BLMF1 GLCTLVAML effector T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*02:01 B2M MHCI -4929 chip0420_203030 6.99 11.97 Chip1 healthy_2 healthy _ 6746 3994 NP30-38 FLU 0.61 72 NEG 69 3925 7 InfluenzaA NP RPIIRPATL transitional T cells between effector and memory populations PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-B*08:01 B2M MHCI -4930 chip0420_132975 -3.05 14.55 Chip1 T1D_1 T1D TGCGCCAGCAGCTTAAACGGGGACCCTCAAGAGACCCAGTACTTC CASSLNGDPQETQYF TRBV7-3*01 TRBJ2-5*01 18.0 1020.0 _CASSLNGDPQETQYF 2 3059 PGT-178 PGT 0.78 1480 NEG 56 3003 1 HomoSapiens PGT LLAGIGTVPI Naive T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*02:01 B2M MHCI -4931 chip0420_170306 0.78 5.4 Chip1 T1D_1 T1D TGTGGCACTCAAGAGAATGACAGCTGGGGGAAATTGCAGTTT CGTQENDSWGKLQF TRAV30*01 TRAJ24*01 2.0 47.0 TGCAGCGTGGGGACAGGGGGAACTAATGAAAAACTGTTTTTT CSVGTGGTNEKLFF TRBV29-1*01 TRBJ1-4*01 4.0 49.0 CGTQENDSWGKLQF_CSVGTGGTNEKLFF 1 5562 VPR-59-67 HIV 0.72 16 VPR-59-67 66 5496 5 HIV-1 VPR AIIRILQQL natural killer-like T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*02:01 B2M MHCI -4932 chip0420_873177 -2.81 9.65 Chip1 T1D_2 T1D TGTGCCAGCACCGCCGGGCTAGCGGGGCACGAGCAGTACTTC CASTAGLAGHEQYF TRBV6-1*01 TRBJ2-7*01 23.0 1129.0 _CASTAGLAGHEQYF 1 4664 MART1-ALA MART1 0.6 269 NEG 79 4585 2 HomoSapiens MART1 ALAGIGILTV Naive T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*02:01 B2M MHCI -4933 chip0420_284524 -3.15 13.9 Chip1 T1D_1 T1D TGCAGTGCTAGAGGTGACAGGGAGGTATCCTACAATGAGCAGTTCTTC CSARGDREVSYNEQFF TRBV20-1*01 TRBJ2-1*01 26.0 1447.0 _CSARGDREVSYNEQFF 1 3237 EBV-BRLF1 EBV 0.6 1264 NEG 80 3157 1 EBV BRLF1 YVLDHLIVV Naive T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*02:01 B2M MHCI -4934 chip0420_659792 15.37 12.03 Chip1 T1D_1 T1D TGTGCCAGCAGTGAAGGGCGAGTCTCTCCGGGCGAAGCTTTCTTT CASSEGRVSPGEAFF TRBV2*01 TRBJ1-1*01 24.0 1095.0 _CASSEGRVSPGEAFF 29 1691 EBV-BLMF1 EBV 0.6 2531 NEG 78 1613 12 EBV BLMF1 GLCTLVAML effector T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*02:01 B2M MHCI -4935 chip0420_864061 12.02 8.38 Chip1 T1D_1 T1D _ 6746 5922 EBV-BLMF1 EBV 0.92 2531 EBV-BLMF1 89 5833 10 EBV BLMF1 GLCTLVAML effector memory T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*02:01 B2M MHCI -4936 chip0420_29387 10.64 13.71 Chip1 T1D_1 T1D _ 6746 3976 PGT-178 PGT 0.45 1480 PGT-178 63 3913 11 HomoSapiens PGT LLAGIGTVPI effector T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*02:01 B2M MHCI -4937 chip0420_710173 -3.36 10.81 Chip1 healthy_2 healthy TGTGCCAGCAGTTACGGTTCCAACACCGGGGAGCTGTTTTTT CASSYGSNTGELFF TRBV6-5*01 TRBJ2-2*01 31.0 1108.0 _CASSYGSNTGELFF 1 3786 M1 FLU 0.56 1250 NEG 71 3715 2 InfluenzaA M1 GILGFVFTL Naive T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*02:01 B2M MHCI -4938 chip0420_342043 8.59 13.84 Chip1 T1D_1 T1D _ 6746 2510 M1 FLU 0.56 1250 NEG 76 2434 11 InfluenzaA M1 GILGFVFTL effector T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*02:01 B2M MHCI -4939 chip0420_160765 -2.45 15.44 Chip1 T1D_1 T1D _ 6746 1287 IGRP-265-273 IGRP 0.75 34 NEG 61 1226 1 HomoSapiens IGRP VLFGLGFAI Naive T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*02:01 B2M MHCI -4940 chip0420_700368 4.96 10.62 Chip1 T1D_2 T1D _ 6746 4744 MART1-ALA MART1 0.56 269 NEG 77 4667 6 HomoSapiens MART1 ALAGIGILTV central memory T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*02:01 B2M MHCI -4941 chip0420_400946 -3.88 9.39 Chip1 T1D_1 T1D _ 6746 4685 PGT-178 PGT 0.9 1480 PGT-178 73 4612 2 HomoSapiens PGT LLAGIGTVPI Naive T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*02:01 B2M MHCI -4942 chip0420_528856 15.06 11.95 Chip1 healthy_1 healthy TGTGCCAGCAGTGAGGCGGGAGGGGGCTACGAGCAGTACTTC CASSEAGGGYEQYF TRBV12-3*01,TRBV12-4*01 TRBJ2-7*01 28.0 1803.0 _CASSEAGGGYEQYF 1 1622 MART1-27-35 MART1 0.67 7 NEG 70 1552 12 HomoSapiens MART1 AAGIGILTV effector T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*02:01 B2M MHCI -4943 chip0420_487512 -4.12 11.85 Chip1 T1D_1 T1D _ 6746 3185 CVB3-P3A CVB 0.54 77 NEG 63 3122 1 CoxsackievirusB P3A GIIYIIYKL Naive T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*02:01 B2M MHCI -4944 chip0420_615118 -3.88 8.63 Chip1 healthy_2 healthy _ 6746 4168 G6PC2-LTS-10 IGRP 0.89 59 G6PC2-LTS-10 69 4099 2 HomoSapiens G6PC2 LTSLTILQLY Naive T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*01:01 B2M MHCI -4945 chip0420_557371 -3.79 12.73 Chip1 T1D_1 T1D _ 6746 3125 EBV-LMP1-1 EBV 0.67 237 NEG 62 3063 1 EBV LMP1 YLLEMLWRL Naive T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*02:01 B2M MHCI -4946 chip0420_145647 -2.83 12.57 Chip1 healthy_1 healthy TGCAGTGCAGATGAGCAGTTCTTC CSADEQFF TRBV20-1*01 TRBJ2-1*01 29.0 3711.0 _CSADEQFF 1 3603 ZNT8-173-181 ZNT8 0.64 27 NEG 71 3532 1 HomoSapiens ZNT8 IQATVMIIV Naive T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*02:01 B2M MHCI -4947 chip0420_674917 7.52 13.75 Chip1 healthy_1 healthy TGTGCAGGCGCGGGAAGCCAAAGAAATCTCATCTTT CAGAGSQRNLIF TRAV27*01 TRAJ42*01 28.0 2073.0 CAGAGSQRNLIF_ 1 3239 M1 FLU 0.96 1250 M1 74 3165 7 InfluenzaA M1 GILGFVFTL transitional T cells between effector and memory populations PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*02:01 B2M MHCI -4948 chip0420_24475 16.01 9.7 Chip1 T1D_2 T1D _ 6746 2029 EBV-BRLF1 EBV 0.86 1264 EBV-BRLF1 86 1943 12 EBV BRLF1 YVLDHLIVV effector T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*02:01 B2M MHCI -4949 chip0420_416753 0.74 8.77 Chip1 T1D_1 T1D _ 6746 4009 PGT-178 PGT 0.92 1480 PGT-178 84 3925 4 HomoSapiens PGT LLAGIGTVPI Naive T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*02:01 B2M MHCI -4950 chip0420_330543 -2.55 15.12 Chip1 T1D_1 T1D _ 6746 1938 GAD65-114-122 GAD65 0.83 63 GAD65-114-122 62 1876 1 HomoSapiens GAD65 VMNILLQYV Naive T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*02:01 B2M MHCI -4951 chip0420_720775 -2.32 15.58 Chip1 T1D_1 T1D TGTGCCAGCAGCTCCGACAGGGGACGGCCCTGGGAGCAGTACTTC CASSSDRGRPWEQYF TRBV7-9*01 TRBJ2-7*01 34.0 2298.0 _CASSSDRGRPWEQYF 1 1770 ZNT8-16-24 ZNT8 0.77 39 NEG 70 1700 1 HomoSapiens ZNT8 KMYAFTLES Naive T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*02:01 B2M MHCI -4952 chip0420_670542 8.22 11.64 Chip1 healthy_2 healthy _ 6746 3017 NP44-52 FLU 0.9 474 NP44-52 66 2951 7 InfluenzaA NP CTELKLSDY transitional T cells between effector and memory populations PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*01:01 B2M MHCI -4953 chip0420_669042 -4.03 9.44 Chip1 healthy_2 healthy _ 6746 4214 MART1-A28L MART1 0.52 84 NEG 72 4142 2 HomoSapiens MART1 ALGIGILTV Naive T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*02:01 B2M MHCI -4954 chip0420_605326 11.78 13.75 Chip1 T1D_1 T1D _ 6746 1319 EBV-BRLF1 EBV 0.83 1264 NEG 69 1250 11 EBV BRLF1 YVLDHLIVV effector T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*02:01 B2M MHCI -4955 chip0420_141245 0.07 6.33 Chip1 T1D_1 T1D _ 6746 6104 EBV-LMP2A EBV 0.8 700 EBV-LMP2A 73 6031 3 EBV LMP2A CLGGLLTMV Naive T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*02:01 B2M MHCI -4956 chip0420_57891 11.39 8.94 Chip1 T1D_2 T1D TGCGCCAGCAGTGAGGACGGTATGAACACTGAAGCTTTCTTT CASSEDGMNTEAFF TRBV10-2*01 TRBJ1-1*01 24.0 790.0 _CASSEDGMNTEAFF 10 4310 EBV-LMP2A EBV 0.92 700 EBV-LMP2A 79 4231 10 EBV LMP2A CLGGLLTMV effector memory T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*02:01 B2M MHCI -4957 chip0420_715472 9.48 9.58 Chip1 T1D_1 T1D _ 6746 4304 EBV-BLMF1 EBV 0.57 2531 EBV-BLMF1 74 4230 8 EBV BLMF1 GLCTLVAML effector memory T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*02:01 B2M MHCI -4958 chip0420_677359 -2.65 10.74 Chip1 T1D_2 T1D TGCAGTGCTAGTCTCGCGGGAGTCTACGAGCAGTACTTC CSASLAGVYEQYF TRBV20-1*01 TRBJ2-7*01 22.0 1840.0 _CSASLAGVYEQYF 1 3847 PGT-178 PGT 1.0 1480 NEG 61 3786 3 HomoSapiens PGT LLAGIGTVPI Naive T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*02:01 B2M MHCI -4959 chip0420_600911 7.35 12.76 Chip1 healthy_1 healthy _ 6746 2941 HCV-35-44 HCV 0.8 13 NEG 66 2875 7 HCV POL YLLPRRGPRL transitional T cells between effector and memory populations PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*02:01 B2M MHCI -4960 chip0420_756644 8.7 10.24 Chip1 T1D_2 T1D TGTGCCAGCAGCTCGGGACTAGTCGCCCCCGGGGAGCTGTTTTTT CASSSGLVAPGELFF TRBV2*01 TRBJ2-2*01 18.0 1194.0 _CASSSGLVAPGELFF 133 4041 EBV-BLMF1 EBV 0.55 2531 NEG 75 3966 8 EBV BLMF1 GLCTLVAML effector memory T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*02:01 B2M MHCI -4961 chip0420_237119 -2.96 10.75 Chip1 T1D_1 T1D _ 6746 4686 PGT-178 PGT 0.67 1480 PGT-178 74 4612 3 HomoSapiens PGT LLAGIGTVPI Naive T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*02:01 B2M MHCI -4962 chip0420_841071 -4.18 11.06 Chip1 healthy_1 healthy _ 6746 4276 PGT-178 PGT 0.77 1480 PGT-178 69 4207 1 HomoSapiens PGT LLAGIGTVPI Naive T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*02:01 B2M MHCI -4963 chip0420_382682 -4.08 11.36 Chip1 T1D_1 T1D TGTGCAATGAGCATATCTAACTTTGGAAATGAGAAATTAACCTTT CAMSISNFGNEKLTF TRAV12-3*01 TRAJ48*01 12.0 617.0 TGTGCCAGTAGATTCCCCCGGGACAGGTCCAACACCGGGGAGCTGTTTTTT CASRFPRDRSNTGELFF TRBV19*01 TRBJ2-2*01 2.0 65.0 CAMSISNFGNEKLTF_CASRFPRDRSNTGELFF 1 4579 PGT-178 PGT 0.9 1480 PGT-178 73 4506 1 HomoSapiens PGT LLAGIGTVPI Naive T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*02:01 B2M MHCI -4964 chip0420_99459 13.32 10.75 Chip1 T1D_1 T1D TGTGCCGTGAATGCGCTCGACAAGCTCATCTTT CAVNALDKLIF TRAV8-1*01 TRAJ34*01 1.0 34.0 CAVNALDKLIF_ 2 2916 EBV-BRLF1 EBV 0.8 1264 NEG 71 2845 9 EBV BRLF1 YVLDHLIVV effector memory T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*02:01 B2M MHCI -4965 chip0420_659263 5.63 13.1 Chip1 T1D_1 T1D _ 6746 4579 M1 FLU 0.57 1250 M1 72 4507 7 InfluenzaA M1 GILGFVFTL transitional T cells between effector and memory populations PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*02:01 B2M MHCI -4966 chip0420_423524 15.13 10.31 Chip1 T1D_1 T1D TGCAGCGTCGGCTCCAGGGGAACTAATGAAAAACTGTTTTTT CSVGSRGTNEKLFF TRBV29-1*01 TRBJ1-4*01 30.0 1858.0 _CSVGSRGTNEKLFF 283 2814 EBV-BLMF1 EBV 0.42 2531 NEG 70 2744 12 EBV BLMF1 GLCTLVAML effector T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*02:01 B2M MHCI -4967 chip0420_141086 -4.55 10.43 Chip1 healthy_1 healthy TGTGCCGTGAACATAGCTAACTTTGGAAATGAGAAATTAACCTTT CAVNIANFGNEKLTF TRAV12-2*01 TRAJ48*01 100.0 2827.0 TGTGCCAGCAGTGACATGAACACTGAAGCCTTCGTT CASSDMNTEAFV TRBV2*01 TRBJ1-1*01 6.0 284.0 CAVNIANFGNEKLTF_CASSDMNTEAFV 1 4235 PGT-178 PGT 0.62 1480 PGT-178 65 4170 2 HomoSapiens PGT LLAGIGTVPI Naive T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*02:01 B2M MHCI -4968 chip0420_639049 7.5 12.13 Chip1 T1D_2 T1D TGTGCCAGCAGTTTTCTCGGGACAGGTCTCAACGAGCAGCACTTC CASSFLGTGLNEQHF TRBV28*01 TRBJ2-7*01 28.0 2017.0 _CASSFLGTGLNEQHF 1 4292 HCV-K1Y HCV 0.5 15 NEG 80 4212 7 HCV POL YLVALGINAV transitional T cells between effector and memory populations PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*02:01 B2M MHCI -4969 chip0420_496187 7.51 12.07 Chip1 healthy_1 healthy _ 6746 3929 M1 FLU 0.58 1250 M1 79 3850 7 InfluenzaA M1 GILGFVFTL transitional T cells between effector and memory populations PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*02:01 B2M MHCI -4970 chip0420_100805 -2.01 9.36 Chip1 T1D_1 T1D _ 6746 4483 PGT-178 PGT 0.53 1480 PGT-178 69 4414 3 HomoSapiens PGT LLAGIGTVPI Naive T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*02:01 B2M MHCI -4971 chip0420_471806 7.7 11.79 Chip1 healthy_1 healthy TGTGCCAGTAGTATTAGAGCCGCCTACGAGCAGTACTTC CASSIRAAYEQYF TRBV19*01 TRBJ2-7*01 27.0 2003.0 _CASSIRAAYEQYF 2 4492 M1 FLU 1.0 1250 M1 61 4431 7 InfluenzaA M1 GILGFVFTL transitional T cells between effector and memory populations PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*02:01 B2M MHCI -4972 chip0420_785796 5.99 12.23 Chip1 T1D_1 T1D _ 6746 3700 M1 FLU 0.96 1250 M1 66 3634 7 InfluenzaA M1 GILGFVFTL transitional T cells between effector and memory populations PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*02:01 B2M MHCI -4973 chip0420_608801 12.97 7.31 Chip1 T1D_1 T1D TGCAGCGTCGGCTCCAGGGGAACTAATGAAAAACTGTTTTTT CSVGSRGTNEKLFF TRBV29-1*01 TRBJ1-4*01 86.0 4207.0 _CSVGSRGTNEKLFF 283 3597 EBV-BLMF1 EBV 0.88 2531 NEG 73 3524 10 EBV BLMF1 GLCTLVAML effector memory T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*02:01 B2M MHCI -4974 chip0420_191836 7.22 12.73 Chip1 healthy_2 healthy _ 6746 2619 NP44-52 FLU 0.79 474 NP44-52 72 2547 7 InfluenzaA NP CTELKLSDY transitional T cells between effector and memory populations PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*01:01 B2M MHCI -4975 chip0420_806266 14.84 12.62 Chip1 T1D_1 T1D _ 6746 1799 EBV-BLMF1 EBV 0.67 2531 NEG 82 1717 12 EBV BLMF1 GLCTLVAML effector T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*02:01 B2M MHCI -4976 chip0420_405452 -4.38 10.89 Chip1 healthy_1 healthy TGTGCCGTGGACCAGGGAGGAAAGCTTATCTTC CAVDQGGKLIF TRAV12-2*01 TRAJ23*01 26.0 2060.0 CAVDQGGKLIF_ 1 3361 PGT-178 PGT 0.66 1480 PGT-178 72 3289 2 HomoSapiens PGT LLAGIGTVPI Naive T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*02:01 B2M MHCI -4977 chip0420_390901 15.09 10.31 Chip1 T1D_1 T1D _ 6746 3139 EBV-BRLF1 EBV 0.72 1264 EBV-BRLF1 66 3073 12 EBV BRLF1 YVLDHLIVV effector T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*02:01 B2M MHCI -4978 chip0420_72757 8.44 10.01 Chip1 T1D_1 T1D TGTGTGGTGAACGGGGGGGATAGCAGCTATAAATTGATCTTC CVVNGGDSSYKLIF TRAV12-1*01 TRAJ12*01 45.0 2118.0 TGTGCCAGCAGTTCGGGACAGGTACTTCCCAATGAGCAGTTCTTC CASSSGQVLPNEQFF TRBV2*01 TRBJ2-1*01 27.0 1690.0 CVVNGGDSSYKLIF_CASSSGQVLPNEQFF 31 4487 EBV-BLMF1 EBV 0.67 2531 NEG 85 4402 8 EBV BLMF1 GLCTLVAML effector memory T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*02:01 B2M MHCI -4979 chip0420_407594 9.5 9.45 Chip1 T1D_3 T1D _ 6746 4902 BZLF1-190-197 EBV 0.88 2156 NEG 82 4820 8 EBV BZLF1 RAKFKQLL effector memory T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-B*08:01 B2M MHCI -4980 chip0420_323923 7.42 13.36 Chip1 healthy_1 healthy TGTGCTGGAGCGGGGTGCCCGGGGAATCTCATCTTT CAGAGCPGNLIF TRAV27*01 TRAJ42*01 10.0 301.0 CAGAGCPGNLIF_ 2 2897 M1 FLU 0.8 1250 M1 68 2829 7 InfluenzaA M1 GILGFVFTL transitional T cells between effector and memory populations PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*02:01 B2M MHCI -4981 chip0420_302827 15.36 12.69 Chip1 T1D_1 T1D TCTGCTGTGACCGCTTTGGCAATGCCGTGCGCTCT SAVTAtt?GNAVRS TRAV8-4*01 TRAJ43*01 24.0 2128.0 TGCAGCGTCGGCTCAAGGGGAACTAAGGAAAAACTGTTTTTT CSVGSRGTKEKLFF TRBV29-1*01 TRBJ1-4*01 10.0 456.0 SAVTAtt?GNAVRS_CSVGSRGTKEKLFF 1 1561 EBV-BLMF1 EBV 0.43 2531 NEG 74 1487 12 EBV BLMF1 GLCTLVAML effector T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*02:01 B2M MHCI -4982 chip0420_33138 6.4 12.27 Chip1 healthy_1 healthy TGCGCCAGCAGCGCGGGACAGGGACTTCCCTACGAGCAGTACTTC CASSAGQGLPYEQYF TRBV5-1*01 TRBJ2-7*01 1.0 21.0 _CASSAGQGLPYEQYF 9 4187 M1 FLU 0.9 1250 M1 62 4125 7 InfluenzaA M1 GILGFVFTL transitional T cells between effector and memory populations PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*02:01 B2M MHCI -4983 chip0420_738759 7.75 12.92 Chip1 healthy_1 healthy _ 6746 2145 EBV-BRLF1 EBV 0.88 1264 EBV-BRLF1 71 2074 7 EBV BRLF1 YVLDHLIVV transitional T cells between effector and memory populations PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*02:01 B2M MHCI -4984 chip0420_711132 13.15 8.32 Chip1 T1D_1 T1D TGTGCTGTGAGTGATACCGGCCCGTACCTACAAATACATCTTT CAVSDTG??cRTYKYIF TRAV8-6*01 TRAJ40*01 3.0 48.0 CAVSDTG??cRTYKYIF_ 3 1862 EBV-BRLF1 EBV 0.9 1264 EBV-BRLF1 66 1796 10 EBV BRLF1 YVLDHLIVV effector memory T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*02:01 B2M MHCI -4985 chip0420_705357 8.27 12.39 Chip1 healthy_1 healthy TGTGCTCCCGGTTACCTGGGCCTGGGCGTTCCCACCTCACTTTC CAPGYLGc?tGRSHLTF TRAV17*01 TRAJ28*01 14.0 455.0 CAPGYLGc?tGRSHLTF_ 1 2940 M1 FLU 1.0 1250 M1 62 2878 7 InfluenzaA M1 GILGFVFTL transitional T cells between effector and memory populations PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*02:01 B2M MHCI -4986 chip0420_239525 -3.74 12.74 Chip1 T1D_1 T1D TGTGCCAGCAGCCCCCTAGGGACAGGGCTAGAGACCCAGTACTTC CASSPLGTGLETQYF TRBV28*01 TRBJ2-5*01 42.0 2349.0 _CASSPLGTGLETQYF 1 3897 PGT-178 PGT 0.6 1480 PGT-178 63 3834 1 HomoSapiens PGT LLAGIGTVPI Naive T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*02:01 B2M MHCI -4987 chip0420_362142 12.8 8.74 Chip1 T1D_1 T1D TGTGCTGTGAGTGATACCGGCCCGCACCTACAAATACATCCTT CAVSDTG??cRTYKYIL TRAV8-6*01 TRAJ40*01 29.0 2597.0 TGTGCCAGCAGTCCGGACCAAACTAGCTCCTACAATGAGCAGTTCTTC CASSPDQTSSYNEQFF TRBV27*01 TRBJ2-1*01 34.0 1810.0 CAVSDTG??cRTYKYIL_CASSPDQTSSYNEQFF 1 1780 EBV-BRLF1 EBV 0.94 1264 EBV-BRLF1 73 1707 10 EBV BRLF1 YVLDHLIVV effector memory T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*02:01 B2M MHCI -4988 chip0420_429577 -4.27 9.41 Chip1 healthy_1 healthy TGTGCCAGCAGCTCCTTGGCGGGAGGAATCGACGAGCAGTACTTC CASSSLAGGIDEQYF TRBV7-2*01 TRBJ2-7*01 3.0 95.0 _CASSSLAGGIDEQYF 1 3970 EBV-LMP2A EBV 0.82 700 NEG 83 3887 4 EBV LMP2A CLGGLLTMV Naive T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*02:01 B2M MHCI -4989 chip0420_352014 9.42 10.5 Chip1 T1D_3 T1D _ 6746 3907 NP140-148 FLU 0.9 102 NP140-148 76 3831 9 InfluenzaA NP HSNLNDATY effector memory T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*01:01 B2M MHCI -4990 chip0420_261156 12.14 8.12 Chip1 T1D_1 T1D TGTGTGGTGAACGGGGAGGATAGCAGCTATAAATTGATCTTC CVVNGEDSSYKLIF TRAV12-1*01 TRAJ12*01 1.0 25.0 TGTGCCAGCAGTGAAGGGCGAGTCTCTCCGGGCGAAGCTTTCTTT CASSEGRVSPGEAFF TRAV14/DV4*01 TRAJ40*01 1.0 14.0 0.5 CVVNGEDSSYKLIF_ 10 1927 EBV-BLMF1 EBV 0.47 2531 NEG 87 1840 10 EBV BLMF1 GLCTLVAML effector memory T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*02:01 B2M MHCI -4991 chip0420_245363 5.43 12.27 Chip1 healthy_2 healthy TGTGCCAGTAGTGCTCGCAGCTCCTACGAGCAGTACTTC CASSARSSYEQYF TRBV19*01 TRBJ2-7*01 1.0 53.0 _CASSARSSYEQYF 1 3388 M1 FLU 0.67 1250 NEG 69 3319 6 InfluenzaA M1 GILGFVFTL central memory T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*02:01 B2M MHCI -4992 chip0420_696029 8.47 7.88 Chip1 T1D_1 T1D TGTGCCAACAGTTCGGGACAGGTACTTCCCAATGAGCAGTTCTTC CANSSGQVLPNEQFF TRBV2*01 TRBJ2-1*01 17.0 1006.0 _CANSSGQVLPNEQFF 1 4126 EBV-BLMF1 EBV 0.62 2531 NEG 69 4057 8 EBV BLMF1 GLCTLVAML effector memory T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*02:01 B2M MHCI -4993 chip0420_235398 5.34 11.47 Chip1 T1D_1 T1D _ 6746 3683 EBV-LMP2-FLY EBV 1.0 355 NEG 65 3618 6 EBV LMP2 FLYALALLL central memory T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*02:01 B2M MHCI -4994 chip0420_794508 -3.81 8.78 Chip1 healthy_1 healthy _ 6746 5461 PGT-178 PGT 0.81 1480 PGT-178 79 5382 2 HomoSapiens PGT LLAGIGTVPI Naive T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*02:01 B2M MHCI -4995 chip0420_699778 11.89 8.24 Chip1 T1D_1 T1D _ 6746 3732 EBV-BLMF1 EBV 0.7 2531 NEG 58 3674 10 EBV BLMF1 GLCTLVAML effector memory T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*02:01 B2M MHCI -4996 chip0420_774915 7.2 12.67 Chip1 healthy_2 healthy _ 6746 2792 IAPP-STN-9 IAPP 0.81 48 IAPP-STN-9 60 2732 7 HomoSapiens IAPP STNVGSNTY transitional T cells between effector and memory populations PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*01:01 B2M MHCI -4997 chip0420_254927 8.6 14.01 Chip1 healthy_1 healthy _ 6746 2454 M1 FLU 0.8 1250 NEG 83 2371 11 InfluenzaA M1 GILGFVFTL effector T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*02:01 B2M MHCI -4998 chip0420_47394 -2.53 15.01 Chip1 T1D_1 T1D TGTGCAATGATGGGGCTCTAGCAGCACAGGCAGACTAATCTTT CAMMGL*??cSTGRLIF TRAV14/DV4*01 TRAJ37*01 51.0 1714.0 CAMMGL*??cSTGRLIF_ 1 2312 IGRP-228-236 IGRP 0.84 16 IGRP-228-236 57 2255 1 HomoSapiens IGRP LNIDLLWSV Naive T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*02:01 B2M MHCI -4999 chip0420_756944 5.56 10.91 Chip1 T1D_1 T1D TGTGCCGTGAAGGACACCGACAAGCTCATCTTT CAVKDTDKLIF TRAV8-1*01 TRAJ34*01 38.0 2674.0 CAVKDTDKLIF_ 56 4759 EBV-BRLF1 EBV 1.0 1264 EBV-BRLF1 67 4692 6 EBV BRLF1 YVLDHLIVV central memory T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*02:01 B2M MHCI -5000 chip0420_327594 7.81 12.93 Chip1 healthy_1 healthy _ 6746 2194 EBV-BRLF1 EBV 0.87 1264 EBV-BRLF1 63 2131 7 EBV BRLF1 YVLDHLIVV transitional T cells between effector and memory populations PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*02:01 B2M MHCI -5001 chip0420_178421 10.31 11.49 Chip1 T1D_1 T1D TGTGCCAGCAGCCCAGTTAGCGGGTCAACCTACGAGCAGTACTTC CASSPVSGSTYEQYF TRBV3-1*01 TRBJ2-7*01 22.0 1430.0 _CASSPVSGSTYEQYF 80 3017 EBV-BLMF1 EBV 0.86 2531 EBV-BLMF1 68 2949 9 EBV BLMF1 GLCTLVAML effector memory T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*02:01 B2M MHCI -5002 chip0420_765546 8.09 11.37 Chip1 T1D_1 T1D _ 6746 3937 EBV-LMP2-FLY EBV 0.89 355 EBV-LMP2-FLY 66 3871 7 EBV LMP2 FLYALALLL transitional T cells between effector and memory populations PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*02:01 B2M MHCI -5003 chip0420_397112 16.16 11.17 Chip1 T1D_1 T1D _ 6746 1771 EBV-BLMF1 EBV 0.6 2531 NEG 64 1707 12 EBV BLMF1 GLCTLVAML effector T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*02:01 B2M MHCI -5004 chip0420_113689 -0.11 4.09 Chip1 healthy_1 healthy TGCAGTGCTAGTTATGGGAACACTGAAGCTTTCTTT CSASYGNTEAFF TRBV20-1*01 TRBJ1-1*01 22.0 1472.0 _CSASYGNTEAFF 1 5844 HCV-L2I HCV 0.44 9 NEG 65 5779 5 HCV POL KIVALGINAV natural killer-like T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*02:01 B2M MHCI -5005 chip0420_602987 -3.85 10.01 Chip1 healthy_1 healthy TGTGCCAGCATCGCGGTAGCGGGAACTGAAGCTTTCTTT CASIAVAGTEAFF TRBV28*01 TRBJ1-1*01 9.0 536.0 _CASIAVAGTEAFF 1 3671 EBV-BRLF1 EBV 0.71 1264 NEG 69 3602 2 EBV BRLF1 YVLDHLIVV Naive T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*02:01 B2M MHCI -5006 chip0420_366185 13.33 6.94 Chip1 T1D_2 T1D TGCGCCAGCAGAGCGGGAGCCGGGGCTACGCAGTATTTT CASRAGAGATQYF TRBV10-2*01 TRBJ2-3*01 3.0 63.0 _CASRAGAGATQYF 3 3071 EBV-BLMF1 EBV 1.0 2531 NEG 67 3004 10 EBV BLMF1 GLCTLVAML effector memory T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*02:01 B2M MHCI -5007 chip0420_278927 0.11 9.17 Chip1 healthy_1 healthy TGTGCCAGCAGCTTAGGAGTTTGGGGTCATGGCGCTGAAGCTTTCTTT CASSLGVWGHGAEAFF TRBV7-2*01 TRBJ1-1*01 18.0 737.0 _CASSLGVWGHGAEAFF 1 4730 PTPRN-180-188 PTPRN 1.0 18 NEG 69 4661 4 HomoSapiens PTPRN LLPPLLEHL Naive T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*02:01 B2M MHCI -5008 chip0420_325950 -4.69 9.83 Chip1 healthy_1 healthy TGTGCAATGAGCTCATCTCACTTTGGCTCTGAGACATTGCCCTTT CAMSSSHFGSETLPF TRAV12-3*01 TRAJ48*01 31.0 1367.0 CAMSSSHFGSETLPF_ 1 3933 PGT-178 PGT 0.59 1480 PGT-178 71 3862 2 HomoSapiens PGT LLAGIGTVPI Naive T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*02:01 B2M MHCI -5009 chip0420_120987 6.29 13.07 Chip1 T1D_1 T1D CTGTGCCAGTAGTATGACCGGGGTCTACGAGCAGTACTTC LCQ*YDcg??ggVYEQYF TRBV19*01 TRBJ2-7*01 28.0 2005.0 _LCQ*YDcg??ggVYEQYF 1 4817 M1 FLU 0.82 1250 M1 66 4751 7 InfluenzaA M1 GILGFVFTL transitional T cells between effector and memory populations PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*02:01 B2M MHCI -5010 chip0420_725272 -2.81 13.81 Chip1 T1D_1 T1D TGTGCAATGAGCATATCTAACTTTGGAAATGAGAAATTACCCTTT CAMSISNFGNEKLPF TRAV12-3*01 TRAJ48*01 32.0 1830.0 TGCGCCAGCAGCTTTGAGGACAGGGTGACTAACTATGGCTACACCTTC CASSFEDRVTNYGYTF TRBV5-1*01 TRBJ1-2*01 38.0 1765.0 CAMSISNFGNEKLPF_CASSFEDRVTNYGYTF 1 2835 PGT-178 PGT 0.6 1480 PGT-178 72 2763 1 HomoSapiens PGT LLAGIGTVPI Naive T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*02:01 B2M MHCI -5011 chip0420_540377 5.9 12.44 Chip1 T1D_1 T1D TGTGTTGTGAGTGATGGCTCAGGAGGAGGTGCTGACGGACTCGCCTTT CVVSDGSGGGADGLAF TRAV8-2*01 TRAJ45*01 6.0 395.0 CVVSDGSGGGADGLAF_ 1 4808 M1 FLU 0.8 1250 M1 69 4739 7 InfluenzaA M1 GILGFVFTL transitional T cells between effector and memory populations PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*02:01 B2M MHCI -5012 chip0420_554518 6.87 12.32 Chip1 T1D_1 T1D _ 6746 4235 M1 FLU 0.88 1250 NEG 77 4158 7 InfluenzaA M1 GILGFVFTL transitional T cells between effector and memory populations PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*02:01 B2M MHCI -5013 chip0420_634178 12.84 8.47 Chip1 T1D_1 T1D TGCGGCACAGAGGAACCTAACGACCACAAGCTCAGCTTT CGTEEPNDHKLSF TRAV30*01 TRAJ20*01 1.0 128.0 CGTEEPNDHKLSF_ 1 1678 EBV-BLMF1 EBV 0.75 2531 NEG 74 1604 10 EBV BLMF1 GLCTLVAML effector memory T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*02:01 B2M MHCI -5014 chip0420_215657 14.23 9.63 Chip1 T1D_1 T1D TGTGCCACCCAACAGGGGAGGGACAGTCAGCCCCAGCATTTT CATQQGRDSQPQHF TRBV28*01 TRBJ1-5*01 9.0 371.0 _CATQQGRDSQPQHF 52 3283 EBV-BLMF1 EBV 0.58 2531 NEG 57 3226 12 EBV BLMF1 GLCTLVAML effector T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*02:01 B2M MHCI -5015 chip0420_68025 5.41 9.52 Chip1 T1D_1 T1D _ 6746 4022 EBV-LMP2-FLY EBV 0.8 355 NEG 63 3959 6 EBV LMP2 FLYALALLL central memory T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*02:01 B2M MHCI -5016 chip0420_786978 7.17 11.0 Chip1 healthy_1 healthy _ 6746 5547 M1 FLU 0.97 1250 M1 73 5474 7 InfluenzaA M1 GILGFVFTL transitional T cells between effector and memory populations PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*02:01 B2M MHCI -5017 chip0420_463565 -0.01 4.2 Chip1 healthy_1 healthy _ 6746 6933 HCV-K1Y HCV 0.6 15 NEG 53 6880 5 HCV POL YLVALGINAV natural killer-like T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*02:01 B2M MHCI -5018 chip0420_86367 -4.4 9.28 Chip1 healthy_1 healthy TGTGCAGCAAGCGAATCTTATAACACCGACAAGCTCATCTTT CAASESYNTDKLIF TRAV29/DV5*01 TRAJ34*01 1.0 104.0 TGTGCCAGTAGTATCAGGAGCTCAGATGAGCAGTTTCTT CASSIRSSDEQFL TRBV19*01 TRBJ2-1*01 1.0 19.0 CAASESYNTDKLIF_CASSIRSSDEQFL 1 4600 PREINS-6-14 INS 0.87 20 NEG 61 4539 2 HomoSapiens PREINS RLLPLLALL Naive T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*02:01 B2M MHCI -5019 chip0420_140734 -3.67 8.49 Chip1 healthy_1 healthy TGTGCCAGCACCTATGGGGGGAGTTCCAATGAGCAGTTCCTC CASTYGGSSNEQFL TRBV9*01 TRBJ2-1*01 2.0 51.0 _CASTYGGSSNEQFL 1 6005 POL-334-342 HIV 0.59 12 POL-334-342 72 5933 2 HIV-1 POL VIYQYMDDL Naive T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*02:01 B2M MHCI -5020 chip0420_295802 12.51 11.01 Chip1 T1D_1 T1D _ 6746 2085 EBV-BLMF1 EBV 0.75 2531 NEG 65 2020 9 EBV BLMF1 GLCTLVAML effector memory T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*02:01 B2M MHCI -5021 chip0420_257443 -3.39 12.81 Chip1 healthy_1 healthy _ 6746 3521 PGT-178 PGT 0.53 1480 PGT-178 76 3445 1 HomoSapiens PGT LLAGIGTVPI Naive T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*02:01 B2M MHCI -5022 chip0420_4052 -1.58 7.67 Chip1 healthy_1 healthy TGTGCCGGGAATTCTGGTTCTGCAAGGCAACTGACCTTT CAGNSGSARQLTF TRAV12-2*01 TRAJ22*01 3.0 343.0 TGTGCCAGCAGTGCCTCGCCAGGGGTCGGGGCTTTCTTT CASSASPGVGAFF TRBV6-1*01 TRBJ1-1*01 22.0 1184.0 CAGNSGSARQLTF_CASSASPGVGAFF 1 5772 ZNT8-115-123 ZNT8 1.0 74 ZNT8-115-123 64 5708 4 HomoSapiens ZNT8 LLSLFSLWL Naive T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*02:01 B2M MHCI -5023 chip0420_694229 6.28 13.3 Chip1 T1D_1 T1D TGTGCAATGAGAGAGGATAATGCAGGCAACATGCTCACCTTT CAMREDNAGNMLTF TRAV14/DV4*01 TRAJ39*01 3.0 143.0 TGTGCCAGTAGTATAATCGATAGGACTCTTGGAACAGATACGCAGTATTTT CASSIIDRTLGTDTQYF TRBV19*01 TRBJ2-3*01 22.0 878.0 CAMREDNAGNMLTF_CASSIIDRTLGTDTQYF 2 3701 M1 FLU 0.79 1250 M1 82 3619 7 InfluenzaA M1 GILGFVFTL transitional T cells between effector and memory populations PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*02:01 B2M MHCI -5024 chip0420_796699 10.98 12.97 Chip1 T1D_2 T1D _ 6746 1693 EBV-BLMF1 EBV 0.71 2531 NEG 77 1616 11 EBV BLMF1 GLCTLVAML effector T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*02:01 B2M MHCI -5025 chip0420_671872 13.89 11.85 Chip1 T1D_1 T1D _ 6746 1622 EBV-BLMF1 EBV 1.0 2531 NEG 85 1537 12 EBV BLMF1 GLCTLVAML effector T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*02:01 B2M MHCI -5026 chip0420_355346 8.06 11.6 Chip1 healthy_1 healthy _ 6746 5024 M1 FLU 0.84 1250 M1 55 4969 7 InfluenzaA M1 GILGFVFTL transitional T cells between effector and memory populations PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*02:01 B2M MHCI -5027 chip0420_215436 7.25 13.24 Chip1 healthy_1 healthy TGTGCTGTCTCTCGGGCCGGGTATGCCCTCAACTTC CAVSRAGYALNF TRAV41*01 TRAJ41*01 33.0 2220.0 CAVSRAGYALNF_ 1 3686 M1 FLU 0.81 1250 M1 72 3614 7 InfluenzaA M1 GILGFVFTL transitional T cells between effector and memory populations PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*02:01 B2M MHCI -5028 chip0420_156632 7.25 13.34 Chip1 healthy_1 healthy TGTGCCAGTAGTATAAGAAGTTCCTACGAGCAGTACTTC CASSIRSSYEQYF TRBV19*01 TRBJ2-7*01 9.0 362.0 _CASSIRSSYEQYF 36 2687 M1 FLU 0.78 1250 M1 64 2623 7 InfluenzaA M1 GILGFVFTL transitional T cells between effector and memory populations PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*02:01 B2M MHCI -5029 chip0420_644023 7.89 10.91 Chip1 T1D_2 T1D _ 6746 3363 EBV-BLMF1 EBV 0.7 2531 NEG 56 3307 7 EBV BLMF1 GLCTLVAML transitional T cells between effector and memory populations PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*02:01 B2M MHCI -5030 chip0420_383221 6.5 14.24 Chip1 healthy_1 healthy TGCGCCGGGGGGGGAAGCCAAGGAAATCTCATCTTT CAGGGSQGNLIF TRAV27*01 TRAJ42*01 5.0 250.0 CAGGGSQGNLIF_ 4 4131 M1 FLU 0.71 1250 M1 76 4055 7 InfluenzaA M1 GILGFVFTL transitional T cells between effector and memory populations PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*02:01 B2M MHCI -5031 chip0420_445605 10.75 7.75 Chip1 T1D_3 T1D TGTGCTGTGAGACTCTCCCTATACTCTGGGGCTGGGAGTTACCAACTCACTTTC CAVRLSLYSGAGSYQLTF TRAV8-3*01 TRAJ28*01 45.0 1974.0 CAVRLSLYSGAGSYQLTF_ 1 3796 EBNA3A-158-166 EBV 0.8 444 NEG 75 3721 10 EBV EBNA3A QAKWRLQTL effector memory T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-B*08:01 B2M MHCI -5032 chip0420_118852 5.49 12.62 Chip1 T1D_1 T1D _ 6746 4937 M1 FLU 0.92 1250 M1 69 4868 7 InfluenzaA M1 GILGFVFTL transitional T cells between effector and memory populations PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*02:01 B2M MHCI -5033 chip0420_824950 14.39 10.24 Chip1 T1D_1 T1D _ 6746 3041 EBV-BRLF1 EBV 0.93 1264 NEG 78 2963 12 EBV BRLF1 YVLDHLIVV effector T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*02:01 B2M MHCI -5034 chip0420_63268 12.53 13.59 Chip1 T1D_1 T1D TGTGCTGACTTAGAATGCTGGCAACCACCGTAAGCTGATTTGG CADLECW??cNHRKLIW TRAV36/DV7*01 TRAJ38*01 89.0 2786.0 CADLECW??cNHRKLIW_ 3 1640 EBV-BLMF1 EBV 0.67 2531 NEG 72 1568 11 EBV BLMF1 GLCTLVAML effector T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*02:01 B2M MHCI -5035 chip0420_384682 11.85 12.28 Chip1 T1D_1 T1D TGTGCCAGCAGCCAAAGCCCGGGTGGTACGCAGTATTTT CASSQSPGGTQYF TRBV14*01 TRBJ2-3*01 5.0 153.0 _CASSQSPGGTQYF 94 2162 EBV-BLMF1 EBV 1.0 2531 NEG 80 2082 11 EBV BLMF1 GLCTLVAML effector T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*02:01 B2M MHCI -5036 chip0420_875103 6.91 13.3 Chip1 T1D_1 T1D TGCCGCGCTGCCCAAAGGACACGGCAAAAAGAAGAACTATGGCTACACCTTC CRAAQRTRca??aaKKNYGYTF TRBV29-1*01 TRBJ1-2*01 4.0 169.0 _CRAAQRTRca??aaKKNYGYTF 1 3257 M1 FLU 0.59 1250 NEG 72 3185 7 InfluenzaA M1 GILGFVFTL transitional T cells between effector and memory populations PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*02:01 B2M MHCI -5037 chip0420_549076 5.03 9.33 Chip1 healthy_1 healthy TGTGCCAGCAGCTTAGGAGCAGGGGGCACGGTAGAGCAGTACTTC CASSLGAGGTVEQYF TRBV13*01 TRBJ2-7*01 3.0 106.0 _CASSLGAGGTVEQYF 1 2125 M1 FLU 0.46 1250 NEG 58 2067 6 InfluenzaA M1 GILGFVFTL central memory T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*02:01 B2M MHCI -5038 chip0420_492027 12.16 13.56 Chip1 T1D_2 T1D TGCGCCAGCAGAGCGGGAGCCGGGGATACGCAGTATTTT CASRAGAGDTQYF TRBV10-2*01 TRBJ2-3*01 22.0 1413.0 _CASRAGAGDTQYF 59 1402 EBV-BLMF1 EBV 0.83 2531 NEG 66 1336 11 EBV BLMF1 GLCTLVAML effector T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*02:01 B2M MHCI -5039 chip0420_482234 6.23 13.26 Chip1 T1D_1 T1D CTGTGCCAGTAGTGAACGGCGCCCAGATACGCAGTATTTT LCQ**Tgc??gcPDTQYF TRBV19*01 TRBJ2-3*01 27.0 820.0 _LCQ**Tgc??gcPDTQYF 1 4142 M1 FLU 0.76 1250 M1 65 4077 7 InfluenzaA M1 GILGFVFTL transitional T cells between effector and memory populations PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*02:01 B2M MHCI -5040 chip0420_367927 6.89 13.44 Chip1 healthy_1 healthy _ 6746 2520 M1 FLU 0.94 1250 M1 64 2456 6 InfluenzaA M1 GILGFVFTL central memory T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*02:01 B2M MHCI -5041 chip0420_52262 6.59 12.3 Chip1 healthy_1 healthy _ 6746 4414 M1 FLU 0.95 1250 M1 77 4337 7 InfluenzaA M1 GILGFVFTL transitional T cells between effector and memory populations PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*02:01 B2M MHCI -5042 chip0420_252380 -0.98 10.56 Chip1 T1D_1 T1D TGTGACAGCGGCGGCTCTGCCCGGGCGGGCCGCCGAGAGACCCAGTACTTC CDSGGSARAGRRETQYF TRBV2*01 TRBJ2-5*01 3.0 65.0 _CDSGGSARAGRRETQYF 1 4474 PGT-178 PGT 0.77 1480 PGT-178 61 4413 3 HomoSapiens PGT LLAGIGTVPI Naive T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*02:01 B2M MHCI -5043 chip0420_435397 7.21 13.66 Chip1 healthy_1 healthy _ 6746 3578 M1 FLU 0.75 1250 NEG 66 3512 7 InfluenzaA M1 GILGFVFTL transitional T cells between effector and memory populations PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*02:01 B2M MHCI -5044 chip0420_227421 -1.92 10.68 Chip1 T1D_3 T1D TGTGCCAGTAGTTGGACAGCGAACACTGAAGCTTTCTTT CASSWTANTEAFF TRBV19*01 TRBJ1-1*01 5.0 279.0 _CASSWTANTEAFF 1 4039 INS-GSH-9 INS 0.44 19 INS-GSH-9 77 3962 3 HomoSapiens INS GSHLVEALY Naive T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*01:01 B2M MHCI -5045 chip0420_182141 10.71 11.45 Chip1 T1D_3 T1D TGCGCCAGCAGCGGAGGGGCCCCCCAGGCGAGTGAGCAGTTCTTC CASSGGAPQASEQFF TRBV4-1*01 TRBJ2-1*01 1.0 38.0 _CASSGGAPQASEQFF 1 2600 BZLF1-190-197 EBV 0.75 2156 BZLF1-190-197 61 2539 9 EBV BZLF1 RAKFKQLL effector memory T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-B*08:01 B2M MHCI -5046 chip0420_353765 5.04 12.07 Chip1 T1D_1 T1D _ 6746 4071 M1 FLU 0.9 1250 M1 80 3991 6 InfluenzaA M1 GILGFVFTL central memory T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*02:01 B2M MHCI -5047 chip0420_764917 -0.08 4.0 Chip1 T1D_1 T1D _ 6746 4502 EBV-LMP1-1 EBV 0.68 237 EBV-LMP1-1 70 4432 5 EBV LMP1 YLLEMLWRL natural killer-like T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*02:01 B2M MHCI -5048 chip0420_668041 8.13 13.74 Chip1 T1D_1 T1D TGTGCCGTGGGGTTGATCCGAGGTTAATAGGAAACTGACATTT CAVGLIR??gVNRKLTF TRAV39*01 TRAJ56*01 1.0 42.0 TGTGCCAGTAGTTTTGGAGGGGGAGCTGTTTTTT CASSFgg??agGELFF TRBV19*01 TRBJ2-2*01 1.0 83.0 CAVGLIR??gVNRKLTF_CASSFgg??agGELFF 1 2637 M1 FLU 0.44 1250 M1 61 2576 7 InfluenzaA M1 GILGFVFTL transitional T cells between effector and memory populations PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*02:01 B2M MHCI -5049 chip0420_744250 13.33 13.65 Chip1 T1D_1 T1D TGCGGCCCAGAGGAACCTAACGACTACAAGCTCAGCTTT CGPEEPNDYKLSF TRAV30*01 TRAJ20*01 16.0 1902.0 CGPEEPNDYKLSF_ 13 1127 EBV-BLMF1 EBV 0.57 2531 NEG 69 1058 11 EBV BLMF1 GLCTLVAML effector T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*02:01 B2M MHCI -5050 chip0420_287436 -3.94 10.1 Chip1 T1D_1 T1D _ 6746 4406 PGT-178 PGT 0.72 1480 PGT-178 78 4328 2 HomoSapiens PGT LLAGIGTVPI Naive T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*02:01 B2M MHCI -5051 chip0420_437729 12.6 9.75 Chip1 T1D_1 T1D TGCGGCCCCGCGGAACCTAACGACTACAAGCTCAGCTTT CGPAEPNDYKLSF TRAV30*01 TRAJ20*01 35.0 2165.0 CGPAEPNDYKLSF_ 4 4102 EBV-BLMF1 EBV 0.85 2531 NEG 75 4027 9 EBV BLMF1 GLCTLVAML effector memory T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*02:01 B2M MHCI -5052 chip0420_746030 13.29 13.6 Chip1 T1D_1 T1D _ 6746 1481 EBV-BLMF1 EBV 0.75 2531 NEG 57 1424 11 EBV BLMF1 GLCTLVAML effector T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*02:01 B2M MHCI -5053 chip0420_808120 6.23 13.32 Chip1 healthy_2 healthy _ 6746 3196 M1 FLU 1.0 1250 NEG 76 3120 7 InfluenzaA M1 GILGFVFTL transitional T cells between effector and memory populations PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*02:01 B2M MHCI -5054 chip0420_65267 12.66 13.71 Chip1 T1D_1 T1D _ 6746 1485 EBV-BRLF1 EBV 0.8 1264 NEG 60 1425 11 EBV BRLF1 YVLDHLIVV effector T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*02:01 B2M MHCI -5055 chip0420_139293 8.02 13.36 Chip1 healthy_1 healthy _ 6746 2432 M1 FLU 0.56 1250 M1 70 2362 7 InfluenzaA M1 GILGFVFTL transitional T cells between effector and memory populations PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*02:01 B2M MHCI -5056 chip0420_535868 9.45 8.46 Chip1 T1D_1 T1D _ 6746 4076 EBV-BLMF1 EBV 0.5 2531 NEG 74 4002 8 EBV BLMF1 GLCTLVAML effector memory T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*02:01 B2M MHCI -5057 chip0420_509302 7.4 13.4 Chip1 healthy_1 healthy _ 6746 3207 M1 FLU 0.85 1250 M1 51 3156 7 InfluenzaA M1 GILGFVFTL transitional T cells between effector and memory populations PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*02:01 B2M MHCI -5058 chip0420_825029 11.89 13.18 Chip1 T1D_1 T1D _ 6746 1824 EBV-BLMF1 EBV 0.82 2531 NEG 67 1757 11 EBV BLMF1 GLCTLVAML effector T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*02:01 B2M MHCI -5059 chip0420_802562 7.61 11.9 Chip1 healthy_1 healthy TGTGCAATGCAAAAGGGTAATGCAGGCAACATGCTCACCTTT CAMQKGNAGNMLTF TRAV14/DV4*01 TRAJ39*01 2.0 167.0 TGTGCCAGCAGCTTAAGCCTAGCGGAGATCTACGAGCAGTACTTC CASSLSLAEIYEQYF TRBV11-1*01 TRBJ2-7*01 2.0 53.0 CAMQKGNAGNMLTF_CASSLSLAEIYEQYF 1 3462 M1 FLU 0.7 1250 M1 66 3396 7 InfluenzaA M1 GILGFVFTL transitional T cells between effector and memory populations PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*02:01 B2M MHCI -5060 chip0420_748508 10.74 14.0 Chip1 T1D_1 T1D _ 6746 1034 M1 FLU 1.0 1250 NEG 64 970 11 InfluenzaA M1 GILGFVFTL effector T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*02:01 B2M MHCI -5061 chip0420_695727 7.15 13.66 Chip1 T1D_1 T1D TGTGCAATGAGAGAAGGAGTCGTGGAATATGGAAACAAACTGGTCTTT CAMREGVVEYGNKLVF TRAV14/DV4*01 TRAJ47*01 66.0 2190.0 TGTGCCAGTAGTTTTGAAGCCGGGGAGCTGTTTTTT CASSFEAGELFF TRBV19*01 TRBJ2-2*01 20.0 1211.0 CAMREGVVEYGNKLVF_CASSFEAGELFF 1 3978 M1 FLU 0.7 1250 M1 70 3908 7 InfluenzaA M1 GILGFVFTL transitional T cells between effector and memory populations PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*02:01 B2M MHCI -5062 chip0420_662873 11.63 9.47 Chip1 T1D_1 T1D TGCAGCGTCGGCTCCAGGGGAACTAATGAAAAACTGTTTTTT CSVGSRGTNEKLFF TRBV29-1*01 TRBJ1-4*01 72.0 4050.0 _CSVGSRGTNEKLFF 283 2382 EBV-BLMF1 EBV 1.0 2531 NEG 68 2314 10 EBV BLMF1 GLCTLVAML effector memory T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*02:01 B2M MHCI -5063 chip0420_765540 6.07 13.72 Chip1 T1D_1 T1D TGTGCTTTCATGACGAATGCTGGTGGTACTAGCTATGAAAAGCTGACATTT CAFMTNAGGTSYEKLTF TRAV38-1*01 TRAJ52*01 5.0 230.0 CAFMTNAGGTSYEKLTF_ 1 5960 M1 FLU 0.85 1250 M1 60 5900 7 InfluenzaA M1 GILGFVFTL transitional T cells between effector and memory populations PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*02:01 B2M MHCI -5064 chip0420_360460 -4.03 12.6 Chip1 healthy_1 healthy TGTGCCATCTGGGCGGGGGGGGGTCGTAATGAGCAGTTCTTC CAIWAGGGRNEQFF TRBV6-2*01,TRBV6-3*01 TRBJ2-1*01 24.0 1110.0 _CAIWAGGGRNEQFF 1 3477 ZNT8-16-24 ZNT8 0.6 39 NEG 64 3413 1 HomoSapiens ZNT8 KMYAFTLES Naive T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*02:01 B2M MHCI -5065 chip0420_606691 6.06 12.64 Chip1 healthy_1 healthy TGCGCCAGCAGCTTGGTAGGGGACACCTACGAGCAGTACTTC CASSLVGDTYEQYF TRBV5-1*01 TRBJ2-7*01 32.0 1995.0 _CASSLVGDTYEQYF 1 4617 M1 FLU 1.0 1250 M1 68 4549 7 InfluenzaA M1 GILGFVFTL transitional T cells between effector and memory populations PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*02:01 B2M MHCI -5066 chip0420_482743 12.72 11.25 Chip1 T1D_2 T1D TGCAGCGTGGGGACAGGGGGAACTAATGAAAAACTGTTTTTT CSVGTGGTNEKLFF TRBV29-1*01 TRBJ1-4*01 29.0 1293.0 _CSVGTGGTNEKLFF 638 1978 EBV-BLMF1 EBV 0.67 2531 NEG 65 1913 9 EBV BLMF1 GLCTLVAML effector memory T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*02:01 B2M MHCI -5067 chip0420_617954 8.28 13.72 Chip1 T1D_1 T1D TGTGCCAGTAGTATAAGGTCGGCCTACGAGCAGTACTTC CASSIRSAYEQYF TRBV19*01 TRBJ2-7*01 30.0 1989.0 _CASSIRSAYEQYF 11 2370 M1 FLU 0.82 1250 NEG 61 2309 7 InfluenzaA M1 GILGFVFTL transitional T cells between effector and memory populations PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*02:01 B2M MHCI -5068 chip0420_365036 13.95 10.04 Chip1 T1D_1 T1D TGTGCCAGCAGCACGGGACAGCTATCGAACACCGGGGAGCTGTTTTTT CASSTGQLSNTGELFF TRBV9*01 TRBJ2-2*01 6.0 267.0 _CASSTGQLSNTGELFF 82 2609 EBV-BLMF1 EBV 0.65 2531 EBV-BLMF1 73 2536 12 EBV BLMF1 GLCTLVAML effector T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*02:01 B2M MHCI -5069 chip0420_722712 11.15 14.05 Chip1 T1D_1 T1D _ 6746 849 EBV-LMP2-FLY EBV 1.0 355 NEG 58 791 11 EBV LMP2 FLYALALLL effector T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*02:01 B2M MHCI -5070 chip0420_857078 -4.08 11.37 Chip1 T1D_1 T1D _ 6746 4103 PGT-178 PGT 0.6 1480 PGT-178 65 4038 1 HomoSapiens PGT LLAGIGTVPI Naive T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*02:01 B2M MHCI -5071 chip0420_679553 7.81 13.03 Chip1 healthy_1 healthy TGTGCACCGGTCTAGGGGGCACAGGCTTTCAGAAACTTGTATTT CAPV*GAc?aGFQKLVF TRAV25*01,TRAV19*01 TRAJ8*01 2.0 5.0 TGCAGTGCCCCCGCGCCTCCCGGGCAGCCCCAGCATTTT CSAPAPPGQPQHF TRBV20-1*01 TRBJ1-5*01 17.0 1394.0 CAPV*GAc?aGFQKLVF_CSAPAPPGQPQHF 1 2211 EBV-BRLF1 EBV 0.95 1264 EBV-BRLF1 58 2153 7 EBV BRLF1 YVLDHLIVV transitional T cells between effector and memory populations PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*02:01 B2M MHCI -5072 chip0420_111790 7.6 9.93 Chip1 T1D_2 T1D _ 6746 5748 EBV-BLMF1 EBV 0.64 2531 NEG 67 5681 7 EBV BLMF1 GLCTLVAML transitional T cells between effector and memory populations PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*02:01 B2M MHCI -5073 chip0420_490018 -3.72 12.41 Chip1 healthy_1 healthy TGTGCAATGAGCGCTTCTAACTTTGGAAATGAGAAATTAACCTTT CAMSASNFGNEKLTF TRAV12-3*01 TRAJ48*01 3.0 145.0 TGTGCCAGCAGCTTCGTGCTGGGACTACCGGGAGAGGGGTACACCGGGGAGCTGTTTTTT CASSFVLGLPGEGYTGELFF TRBV7-8*01 TRBJ2-2*01 2.0 97.0 CAMSASNFGNEKLTF_CASSFVLGLPGEGYTGELFF 1 3693 PGT-178 PGT 0.53 1480 NEG 71 3622 1 HomoSapiens PGT LLAGIGTVPI Naive T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*02:01 B2M MHCI -5074 chip0420_768718 0.59 8.85 Chip1 T1D_1 T1D TGTGCCAGCAGTTTATTTACCGCCGAGGTGACGCAGTATTTT CASSLFTAEVTQYF TRBV28*01 TRBJ2-3*01 9.0 280.0 _CASSLFTAEVTQYF 1 4766 PGT-178 PGT 0.5 1480 PGT-178 58 4708 4 HomoSapiens PGT LLAGIGTVPI Naive T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*02:01 B2M MHCI -5075 chip0420_111472 -2.69 14.82 Chip1 T1D_1 T1D TGTGCCAGCAGCCTCCACAGTGCCTTGTCCTACGAGCAGTACTTC CASSLHSALSYEQYF TRBV7-8*01 TRBJ2-7*01 21.0 1182.0 _CASSLHSALSYEQYF 1 2444 MART1-ALA MART1 0.57 269 NEG 72 2372 1 HomoSapiens MART1 ALAGIGILTV Naive T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*02:01 B2M MHCI -5076 chip0420_855301 10.54 13.55 Chip1 T1D_2 T1D TGTGCCGTGAAGGACACCGACAAGCTCATCTTT CAVKDTDKLIF TRAV8-1*01 TRAJ34*01 1.0 57.0 CAVKDTDKLIF_ 56 1681 EBV-BRLF1 EBV 1.0 1264 NEG 75 1606 11 EBV BRLF1 YVLDHLIVV effector T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*02:01 B2M MHCI -5077 chip0420_485784 10.26 13.94 Chip1 T1D_1 T1D _ 6746 1415 M1 FLU 0.73 1250 NEG 65 1350 11 InfluenzaA M1 GILGFVFTL effector T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*02:01 B2M MHCI -5078 chip0420_148332 -1.99 12.51 Chip1 T1D_1 T1D _ 6746 3555 PGT-178 PGT 0.87 1480 PGT-178 64 3491 1 HomoSapiens PGT LLAGIGTVPI Naive T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*02:01 B2M MHCI -5079 chip0420_865274 14.88 8.58 Chip1 T1D_1 T1D TGCAGTGCTAGAGACGGGACAGGGAATGGCTACACCTTC CSARDGTGNGYTF TRBV20-1*01 TRBJ1-2*01 23.0 1306.0 _CSARDGTGNGYTF 14 3488 EBV-BLMF1 EBV 0.91 2531 EBV-BLMF1 83 3405 12 EBV BLMF1 GLCTLVAML effector T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*02:01 B2M MHCI -5080 chip0420_532887 6.88 11.73 Chip1 healthy_1 healthy TGTGCCAGTAGTACGCGGAGCTCCTACGAGCAGTACTTC CASSTRSSYEQYF TRBV19*01 TRBJ2-7*01 5.0 374.0 _CASSTRSSYEQYF 7 4550 M1 FLU 0.75 1250 M1 69 4481 7 InfluenzaA M1 GILGFVFTL transitional T cells between effector and memory populations PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*02:01 B2M MHCI -5081 chip0420_516700 8.17 13.69 Chip1 healthy_1 healthy TGTGCCAGTAGTATAAGAAGTTCCTACGAGCAGTACTTC CASSIRSSYEQYF TRBV19*01 TRBJ2-7*01 1.0 58.0 _CASSIRSSYEQYF 36 2627 M1 FLU 0.91 1250 NEG 58 2569 7 InfluenzaA M1 GILGFVFTL transitional T cells between effector and memory populations PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*02:01 B2M MHCI -5082 chip0420_670435 8.72 8.32 Chip1 tet_neg _ 6746 6049 M1 FLU 0.55 1250 NEG 61 5988 8 InfluenzaA M1 GILGFVFTL effector memory T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*02:01 B2M MHCI -5083 chip0420_202327 7.34 12.52 Chip1 healthy_1 healthy _ 6746 3551 M1 FLU 0.92 1250 M1 68 3483 7 InfluenzaA M1 GILGFVFTL transitional T cells between effector and memory populations PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*02:01 B2M MHCI -5084 chip0420_693550 -2.3 11.98 Chip1 T1D_1 T1D _ 6746 3233 PGT-178 PGT 0.85 1480 PGT-178 58 3175 1 HomoSapiens PGT LLAGIGTVPI Naive T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*02:01 B2M MHCI -5085 chip0420_151638 7.07 12.86 Chip1 healthy_1 healthy TGTGCTGTCGTAAGAAACCAGTGGCTCTAGGTTGTCCTTT CAVVRNca??gtGSRLSF TRAV41*01 TRAJ10*01,TRAJ39*01 24.0 1995.0 TGTGCCAGTAGTACGCGGAGCTCCTACGAGCAGTACTTC CASSTRSSYEQYF TRBV19*01 TRBJ2-7*01 1.0 58.0 CAVVRNca??gtGSRLSF_CASSTRSSYEQYF 1 3431 M1 FLU 0.57 1250 M1 68 3363 7 InfluenzaA M1 GILGFVFTL transitional T cells between effector and memory populations PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*02:01 B2M MHCI -5086 chip0420_331359 6.66 13.23 Chip1 T1D_1 T1D CTGTGCCAGTAGTTCTGGGGCTTATGGCTACACCTTC LCQ*FW??gAYGYTF TRBV19*01 TRBJ1-2*01 1.0 11.0 _LCQ*FW??gAYGYTF 1 3083 M1 FLU 0.62 1250 M1 79 3004 7 InfluenzaA M1 GILGFVFTL transitional T cells between effector and memory populations PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*02:01 B2M MHCI -5087 chip0420_586117 12.31 14.01 Chip1 T1D_1 T1D _ 6746 723 EBV-BLMF1 EBV 0.8 2531 NEG 57 666 11 EBV BLMF1 GLCTLVAML effector T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*02:01 B2M MHCI -5088 chip0420_252022 -2.49 14.33 Chip1 T1D_1 T1D TGTGCCATCAGTGAAGGGACCCTAGGGGCTCAGCCCCAGCATTTT CAISEGTLGAQPQHF TRBV10-3*01 TRBJ1-5*01 4.0 58.0 _CAISEGTLGAQPQHF 1 2395 PGT-178 PGT 0.78 1480 PGT-178 59 2336 1 HomoSapiens PGT LLAGIGTVPI Naive T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*02:01 B2M MHCI -5089 chip0420_820882 14.44 12.81 Chip1 T1D_2 T1D TGCAGCGTGGGGACAGGGGGCACTAACGAAAAACTGTTTTT CSVGTGgg?H*RKTVF TRBV29-1*01 TRBJ1-4*01 25.0 1263.0 _CSVGTGgg?H*RKTVF 1 2189 EBV-BLMF1 EBV 0.6 2531 NEG 61 2128 12 EBV BLMF1 GLCTLVAML effector T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*02:01 B2M MHCI -5090 chip0420_206565 12.13 12.76 Chip1 T1D_2 T1D _ 6746 2304 EBV-BLMF1 EBV 1.0 2531 NEG 50 2254 11 EBV BLMF1 GLCTLVAML effector T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*02:01 B2M MHCI -5091 chip0420_762211 6.82 12.97 Chip1 healthy_1 healthy TGTGCTCTGAGTGACCAGGGAGCCCAGAAGCTGGTATTT CALSDQGAQKLVF TRAV19*01 TRAJ54*01 1.0 31.0 CALSDQGAQKLVF_ 1 3394 M1 FLU 0.76 1250 NEG 60 3334 7 InfluenzaA M1 GILGFVFTL transitional T cells between effector and memory populations PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*02:01 B2M MHCI -5092 chip0420_65727 6.49 12.8 Chip1 healthy_1 healthy TGTGCCAGTAGTATAAGAAGTTCCTACGAGCAGTACTTC CASSIRSSYEQYF TRBV19*01 TRBJ2-7*01 41.0 2148.0 _CASSIRSSYEQYF 36 4508 M1 FLU 0.95 1250 M1 73 4435 7 InfluenzaA M1 GILGFVFTL transitional T cells between effector and memory populations PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*02:01 B2M MHCI -5093 chip0420_14256 -2.33 15.61 Chip1 T1D_1 T1D _ 6746 1707 PGT-178 PGT 0.52 1480 PGT-178 65 1642 1 HomoSapiens PGT LLAGIGTVPI Naive T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*02:01 B2M MHCI -5094 chip0420_449868 13.8 11.84 Chip1 T1D_1 T1D TGTGCCGTGAAGGGGTATGACAAGATCATCTTT CAVKGYDKIIF TRAV8-1*01 TRAJ30*01 22.0 2124.0 TGTGCCAGCAGTCCGGACCAAACTAGCTCCTACAATGAGCAGTTCTTC CASSPDQTSSYNEQFF TRBV27*01 TRBJ2-1*01 43.0 1962.0 CAVKGYDKIIF_CASSPDQTSSYNEQFF 5 2281 EBV-BRLF1 EBV 0.86 1264 NEG 60 2221 12 EBV BRLF1 YVLDHLIVV effector T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*02:01 B2M MHCI -5095 chip0420_398626 7.52 12.34 Chip1 T1D_1 T1D _ 6746 4184 M1 FLU 0.65 1250 NEG 76 4108 7 InfluenzaA M1 GILGFVFTL transitional T cells between effector and memory populations PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*02:01 B2M MHCI -5096 chip0420_260070 10.7 12.35 Chip1 healthy_1 healthy TGTGCAATGAGAGAGGGAGGCAACTTCAACAAATTTTACTTT CAMREGGNFNKFYF TRAV14/DV4*01 TRAJ21*01 10.0 451.0 TGCAGTGCTTCTCGAGCTCTTGATCAGCCCCAGCATTTT CSASRALDQPQHF TRBV20-1*01 TRBJ1-5*01 27.0 2114.0 CAMREGGNFNKFYF_CSASRALDQPQHF 1 2677 EBV-BRLF1 EBV 0.84 1264 EBV-BRLF1 75 2602 11 EBV BRLF1 YVLDHLIVV effector T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*02:01 B2M MHCI -5097 chip0420_116485 14.76 12.03 Chip1 T1D_2 T1D TGCGCCAGCAGTCAATCGAGAGGGTCGCTCTGGGATACGCAGTATTTT CASSQSRGSLWDTQYF TRBV4-3*01 TRBJ2-3*01 56.0 2270.0 _CASSQSRGSLWDTQYF 21 1930 EBV-BRLF1 EBV 0.87 1264 EBV-BRLF1 66 1864 12 EBV BRLF1 YVLDHLIVV effector T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*02:01 B2M MHCI -5098 chip0420_245750 11.71 13.12 Chip1 T1D_1 T1D _ 6746 1684 EBV-BLMF1 EBV 0.88 2531 NEG 63 1621 11 EBV BLMF1 GLCTLVAML effector T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*02:01 B2M MHCI -5099 chip0420_106268 14.1 10.96 Chip1 T1D_2 T1D TGTGTGGTGAACGGCAGGGATAGCAGCTATAAATTGATCTTC CVVNGRDSSYKLIF TRAV12-1*01 TRAJ12*01 20.0 879.0 CVVNGRDSSYKLIF_ 17 3083 EBV-BLMF1 EBV 1.0 2531 NEG 59 3024 12 EBV BLMF1 GLCTLVAML effector T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*02:01 B2M MHCI -5100 chip0420_627111 -1.55 11.03 Chip1 T1D_1 T1D TGTGCCAGTAGTCCCCCCGGCGGCTACGAGCAGTACTTC CASSPPGGYEQYF TRBV19*01 TRBJ2-7*01 24.0 1331.0 _CASSPPGGYEQYF 1 3866 GP160-311-320 HIV 0.83 109 GP160-311-320 65 3801 3 HIV-1 GP160 RGPGRAFVTI Naive T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*02:01 B2M MHCI -5101 chip0420_357822 -4.45 10.25 Chip1 T1D_1 T1D _ 6746 3710 CVB3-P3A CVB 0.7 77 CVB3-P3A 61 3649 2 CoxsackievirusB P3A GIIYIIYKL Naive T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*02:01 B2M MHCI -5102 chip0420_277732 -2.16 15.92 Chip1 T1D_1 T1D TGTGCAGGAGACACTGAATATGGAAACAAACTGGTCTTT CAGDTEYGNKLVF TRAV27*01 TRAJ47*01 1.0 47.0 CAGDTEYGNKLVF_ 1 1255 PGT-178 PGT 0.76 1480 NEG 51 1204 1 HomoSapiens PGT LLAGIGTVPI Naive T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*02:01 B2M MHCI -5103 chip0420_801428 7.28 12.84 Chip1 healthy_1 healthy _ 6746 3412 M1 FLU 0.79 1250 M1 65 3347 7 InfluenzaA M1 GILGFVFTL transitional T cells between effector and memory populations PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*02:01 B2M MHCI -5104 chip0420_153683 -3.51 8.89 Chip1 T1D_1 T1D TGTGCCAGCAGCCAATTCCTGAACACTGAAGCTTTCTTT CASSQFLNTEAFF TRBV14*01 TRBJ1-1*01 6.0 182.0 _CASSQFLNTEAFF 1 4529 ZNT8-173-181 ZNT8 0.57 27 ZNT8-173-181 72 4457 2 HomoSapiens ZNT8 IQATVMIIV Naive T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*02:01 B2M MHCI -5105 chip0420_110431 5.41 9.16 Chip1 T1D_1 T1D TGTGCCAGCAGCCCGGGGGACGCCCGTGGCGAGCAGTACTTC CASSPGDARGEQYF TRBV5-6*01 TRBJ2-7*01 26.0 1905.0 _CASSPGDARGEQYF 12 5714 EBV-LMP1-1 EBV 0.9 237 EBV-LMP1-1 60 5654 6 EBV LMP1 YLLEMLWRL central memory T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*02:01 B2M MHCI -5106 chip0420_24162 -3.22 11.43 Chip1 T1D_2 T1D TGTGCTTGGCCGAGCCCTCGCAGACAAAGTATTCTTT CAWPSP??cADKVFF TRAV35*01 TRAJ37*01 24.0 1200.0 CAWPSP??cADKVFF_ 1 3390 PGT-178 PGT 0.56 1480 PGT-178 62 3328 1 HomoSapiens PGT LLAGIGTVPI Naive T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*02:01 B2M MHCI -5107 chip0420_748087 14.32 10.26 Chip1 T1D_1 T1D TGTGCCACCCAACAGGGGAGGGACAGTCAGCCCCAGCATTTT CATQQGRDSQPQHF TRBV28*01 TRBJ1-5*01 2.0 30.0 _CATQQGRDSQPQHF 52 3316 EBV-BLMF1 EBV 0.85 2531 NEG 69 3247 12 EBV BLMF1 GLCTLVAML effector T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*02:01 B2M MHCI -5108 chip0420_98128 12.07 13.0 Chip1 T1D_2 T1D _ 6746 1542 EBV-BRLF1 EBV 1.0 1264 NEG 73 1469 11 EBV BRLF1 YVLDHLIVV effector T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*02:01 B2M MHCI -5109 chip0420_520392 11.4 10.42 Chip1 T1D_1 T1D TGTGCTTATAGGAGCCCGCCCTCCTCTGAAAAGCTGGTCTTT CAYRSPPSSEKLVF TRAV38-2/DV8*01 TRAJ57*01 1.0 48.0 TGTGCCAGCAGTGGCGGTCGGGTCCACCCGGGGACCCAGTACTTC CASSGGRVHPGTQYF TRBV2*01 TRBJ2-5*01 31.0 1562.0 CAYRSPPSSEKLVF_CASSGGRVHPGTQYF 1 3440 EBV-BLMF1 EBV 0.67 2531 NEG 75 3365 9 EBV BLMF1 GLCTLVAML effector memory T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*02:01 B2M MHCI -5110 chip0420_766859 4.72 10.44 Chip1 T1D_2 T1D _ 6746 3187 MART1-ALA MART1 0.53 269 NEG 60 3127 6 HomoSapiens MART1 ALAGIGILTV central memory T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*02:01 B2M MHCI -5111 chip0420_29323 -1.9 9.37 Chip1 healthy_1 healthy TGTACTCTGAGGGCCAGGACGAGGTGCTGACGGACTCGCCTTT CTLRART??aGADGLAF TRAV19*01 TRAJ45*01 11.0 796.0 CTLRART??aGADGLAF_ 1 7247 ZNT8-281-290 ZNT8 0.84 6 ZNT8-281-290 61 7186 3 HomoSapiens ZNT8 SLNYSGVKEL Naive T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*02:01 B2M MHCI -5112 chip0420_786716 7.74 13.1 Chip1 healthy_1 healthy _ 6746 2860 M1 FLU 0.64 1250 NEG 58 2802 7 InfluenzaA M1 GILGFVFTL transitional T cells between effector and memory populations PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*02:01 B2M MHCI -5113 chip0420_491788 11.46 10.95 Chip1 T1D_2 T1D _ 6746 2641 EBV-BRLF1 EBV 0.73 1264 NEG 67 2574 9 EBV BRLF1 YVLDHLIVV effector memory T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*02:01 B2M MHCI -5114 chip0420_69348 6.06 12.74 Chip1 T1D_1 T1D _ 6746 4648 M1 FLU 0.43 1250 M1 61 4587 7 InfluenzaA M1 GILGFVFTL transitional T cells between effector and memory populations PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*02:01 B2M MHCI -5115 chip0420_336469 -2.39 15.47 Chip1 T1D_1 T1D _ 6746 1966 PGT-178 PGT 0.88 1480 NEG 60 1906 1 HomoSapiens PGT LLAGIGTVPI Naive T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*02:01 B2M MHCI -5116 chip0420_872428 5.1 9.71 Chip1 T1D_1 T1D _ 6746 4173 EBV-LMP2-FLY EBV 0.77 355 NEG 67 4106 6 EBV LMP2 FLYALALLL central memory T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*02:01 B2M MHCI -5117 chip0420_658926 11.28 11.64 Chip1 T1D_1 T1D _ 6746 2026 EBV-BLMF1 EBV 0.57 2531 NEG 64 1962 9 EBV BLMF1 GLCTLVAML effector memory T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*02:01 B2M MHCI -5118 chip0420_381433 8.2 13.79 Chip1 T1D_1 T1D _ 6746 2771 M1 FLU 0.67 1250 NEG 54 2717 7 InfluenzaA M1 GILGFVFTL transitional T cells between effector and memory populations PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*02:01 B2M MHCI -5119 chip0420_802332 -3.2 8.67 Chip1 T1D_1 T1D _ 6746 4216 PGT-178 PGT 0.81 1480 PGT-178 60 4156 2 HomoSapiens PGT LLAGIGTVPI Naive T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*02:01 B2M MHCI -5120 chip0420_665630 -4.84 9.3 Chip1 healthy_1 healthy _ 6746 5122 ZNT8-165-173 ZNT8 0.79 11 ZNT8-165-173 62 5060 2 HomoSapiens ZNT8 RLLYPDYQI Naive T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*02:01 B2M MHCI -5121 chip0420_414605 11.29 11.76 Chip1 T1D_1 T1D _ 6746 2117 EBV-BRLF1 EBV 0.92 1264 NEG 64 2053 9 EBV BRLF1 YVLDHLIVV effector memory T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*02:01 B2M MHCI -5122 chip0420_148287 5.69 12.04 Chip1 T1D_1 T1D _ 6746 4686 M1 FLU 0.41 1250 M1 49 4637 7 InfluenzaA M1 GILGFVFTL transitional T cells between effector and memory populations PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*02:01 B2M MHCI -5123 chip0420_652469 12.58 7.43 Chip1 T1D_2 T1D _ 6746 3161 EBV-BLMF1 EBV 0.67 2531 NEG 62 3099 10 EBV BLMF1 GLCTLVAML effector memory T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*02:01 B2M MHCI -5124 chip0420_592540 -4.56 8.47 Chip1 tet_neg TGCAGTGCTGACGGGCTCGCGGGAGGGGCTCCTTTCAATGAGCAGTTCTTC CSADGLAGGAPFNEQFF TRBV20-1*01 TRBJ2-1*01 16.0 1025.0 _CSADGLAGGAPFNEQFF 1 3952 NP140-148 FLU 0.5 102 NEG 55 3897 2 InfluenzaA NP HSNLNDATY Naive T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*01:01 B2M MHCI -5125 chip0420_829813 -2.13 15.95 Chip1 T1D_1 T1D _ 6746 928 PGT-178 PGT 0.55 1480 PGT-178 55 873 1 HomoSapiens PGT LLAGIGTVPI Naive T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*02:01 B2M MHCI -5126 chip0420_124631 6.96 13.42 Chip1 T1D_1 T1D _ 6746 3272 M1 FLU 0.75 1250 M1 53 3219 7 InfluenzaA M1 GILGFVFTL transitional T cells between effector and memory populations PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*02:01 B2M MHCI -5127 chip0420_757922 7.3 12.7 Chip1 T1D_1 T1D TGCATTGATATAATTCAGGGAGCCCAGAAGCTGGCATTT CIDIIQGAQKLAF TRAV26-1*01 TRAJ54*01 25.0 2064.0 CIDIIQGAQKLAF_ 1 2966 M1 FLU 0.76 1250 M1 56 2910 7 InfluenzaA M1 GILGFVFTL transitional T cells between effector and memory populations PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*02:01 B2M MHCI -5128 chip0420_621310 -4.48 8.91 Chip1 healthy_1 healthy TGCAGCGTGACAGGATCCTTCACCTCTGGAAACACCATATATTTT CSVTGSFTSGNTIYF TRBV29-1*01 TRBJ1-3*01 163.0 8817.0 _CSVTGSFTSGNTIYF 1 5106 HCVNS4B-1807-1816 HCV 0.67 74 NEG 59 5047 2 HCV NS4B LLFNILGGWV Naive T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*02:01 B2M MHCI -5129 chip0420_224480 8.24 12.91 Chip1 healthy_1 healthy TGCAGTGCCCCCGCGCCTCCCGGGCAGCCCCAGCATTTT CSAPAPPGQPQHF TRBV20-1*01 TRBJ1-5*01 37.0 3316.0 _CSAPAPPGQPQHF 1 2677 EBV-BRLF1 EBV 0.77 1264 EBV-BRLF1 51 2626 7 EBV BRLF1 YVLDHLIVV transitional T cells between effector and memory populations PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*02:01 B2M MHCI -5130 chip0420_832991 -3.15 11.97 Chip1 T1D_2 T1D TGTGCAATGAGAGAGGGCGCCTCCTACGACAAGGTGATATTT CAMREGASYDKVIF TRAV14/DV4*01 TRAJ50*01 2.0 56.0 CAMREGASYDKVIF_ 1 3068 ZNT8-16-24 ZNT8 0.82 39 NEG 63 3005 1 HomoSapiens ZNT8 KMYAFTLES Naive T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*02:01 B2M MHCI -5131 chip0420_112419 12.32 11.36 Chip1 T1D_2 T1D TGTGCCGTGAAGAGGAGAGCTGCAGGCAACAAGCTAACTTTT CAVKRRAAGNKLTF TRAV12-2*01 TRAJ17*01 34.0 2039.0 TGTGCCAGCACCGACACCCCCCGCCTCATTAACACCGGGGCGCTGTTTTTT CASTDTPRLINTGALFF TRBV28*01 TRBJ2-2*01 5.0 204.0 CAVKRRAAGNKLTF_CASTDTPRLINTGALFF 1 2647 EBV-BRLF1 EBV 0.76 1264 NEG 72 2575 9 EBV BRLF1 YVLDHLIVV effector memory T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*02:01 B2M MHCI -5132 chip0420_65286 5.45 9.07 Chip1 T1D_2 T1D _ 6746 3925 EBV-LMP2-FLY EBV 0.85 355 EBV-LMP2-FLY 69 3856 6 EBV LMP2 FLYALALLL central memory T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*02:01 B2M MHCI -5133 chip0420_408219 7.99 11.53 Chip1 healthy_1 healthy _ 6746 4148 M1 FLU 0.72 1250 M1 60 4088 7 InfluenzaA M1 GILGFVFTL transitional T cells between effector and memory populations PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*02:01 B2M MHCI -5134 chip0420_520465 -4.29 10.69 Chip1 healthy_1 healthy _ 6746 4146 PGT-178 PGT 0.7 1480 PGT-178 50 4096 2 HomoSapiens PGT LLAGIGTVPI Naive T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*02:01 B2M MHCI -5135 chip0420_368357 11.7 13.9 Chip1 T1D_1 T1D _ 6746 1060 EBV-BLMF1 EBV 0.53 2531 NEG 58 1002 11 EBV BLMF1 GLCTLVAML effector T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*02:01 B2M MHCI -5136 chip0420_641126 11.12 9.86 Chip1 T1D_1 T1D _ 6746 3125 EBV-BLMF1 EBV 0.71 2531 NEG 59 3066 9 EBV BLMF1 GLCTLVAML effector memory T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*02:01 B2M MHCI -5137 chip0420_632512 11.19 10.17 Chip1 T1D_1 T1D _ 6746 2120 EBV-BRLF1 EBV 0.6 1264 NEG 60 2060 9 EBV BRLF1 YVLDHLIVV effector memory T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*02:01 B2M MHCI -5138 chip0420_537996 13.76 7.61 Chip1 T1D_1 T1D TGTGCTGACTTAGTGTGCTGGCTACTGCCGTTCGCTGATTCGG CADLVCW??cYCRSLIR TRAV36/DV7*01 TRAJ38*01 41.0 1977.0 TGCAGCGTTGCGGGACAGGGGGCCTACGAGCAGTACTTC CSVAGQGAYEQYF TRBV29-1*01 TRBJ2-7*01 3.0 180.0 CADLVCW??cYCRSLIR_CSVAGQGAYEQYF 1 2372 EBV-BLMF1 EBV 0.47 2531 NEG 73 2299 10 EBV BLMF1 GLCTLVAML effector memory T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*02:01 B2M MHCI -5139 chip0420_702782 12.01 9.32 Chip1 T1D_1 T1D _ 6746 3475 EBV-BLMF1 EBV 0.69 2531 NEG 62 3413 10 EBV BLMF1 GLCTLVAML effector memory T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*02:01 B2M MHCI -5140 chip0420_512198 9.22 9.77 Chip1 T1D_1 T1D TGTGCCACCAGTGATTGGCTGACTAACGAGCAGTACTTC CATSDWLTNEQYF TRBV24-1*01 TRBJ2-7*01 7.0 317.0 _CATSDWLTNEQYF 2 3392 EBV-BRLF1 EBV 0.93 1264 EBV-BRLF1 63 3329 8 EBV BRLF1 YVLDHLIVV effector memory T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*02:01 B2M MHCI -5141 chip0420_386905 -3.7 11.98 Chip1 T1D_1 T1D TGTGCCAGTACCCTAGAGAACACTGAAGCTTTCTTT CASTLENTEAFF TRBV2*01 TRBJ1-1*01 11.0 626.0 _CASTLENTEAFF 1 3396 GP160-311-320 HIV 0.67 109 NEG 65 3331 1 HIV-1 GP160 RGPGRAFVTI Naive T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*02:01 B2M MHCI -5142 chip0420_596853 -1.57 8.92 Chip1 T1D_1 T1D _ 6746 4055 ZNT8-228-236 ZNT8 0.9 8 ZNT8-228-236 47 4008 4 HomoSapiens ZNT8 SISVLISAL Naive T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*02:01 B2M MHCI -5143 chip0420_508598 -3.82 12.82 Chip1 T1D_1 T1D _ 6746 3224 ZNT8-273-282 ZNT8 0.89 8 ZNT8-273-282 52 3172 1 HomoSapiens ZNT8 LLMEGVPKSL Naive T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*02:01 B2M MHCI -5144 chip0420_541811 -3.27 14.07 Chip1 T1D_1 T1D _ 6746 3453 IAPP-5-13 IAPP 0.55 30 NEG 59 3394 1 HomoSapiens IAPP KLQVFLIVL Naive T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*02:01 B2M MHCI -5145 chip0420_321402 7.46 13.8 Chip1 healthy_1 healthy TGTGCCAGTAGTACGCGGAGCTCCTACGAGCAGTACTTC CASSTRSSYEQYF TRBV19*01 TRBJ2-7*01 6.0 523.0 _CASSTRSSYEQYF 7 3599 M1 FLU 0.94 1250 M1 57 3542 7 InfluenzaA M1 GILGFVFTL transitional T cells between effector and memory populations PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*02:01 B2M MHCI -5146 chip0420_109203 10.82 12.27 Chip1 healthy_1 healthy _ 6746 2326 EBV-BRLF1 EBV 1.0 1264 NEG 55 2271 11 EBV BRLF1 YVLDHLIVV effector T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*02:01 B2M MHCI -5147 chip0420_65913 13.61 7.99 Chip1 T1D_1 T1D TGCAGTGCTAGAGATGGCACAGGGAATGGCTACACCTTC CSARDGTGNGYTF TRBV20-1*01 TRBJ1-2*01 45.0 2719.0 _CSARDGTGNGYTF 14 2264 EBV-BLMF1 EBV 0.62 2531 NEG 80 2184 10 EBV BLMF1 GLCTLVAML effector memory T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*02:01 B2M MHCI -5148 chip0420_637785 10.11 11.07 Chip1 healthy_1 healthy _ 6746 4210 M1 FLU 0.93 1250 M1 63 4147 9 InfluenzaA M1 GILGFVFTL effector memory T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*02:01 B2M MHCI -5149 chip0420_690344 5.05 11.8 Chip1 T1D_2 T1D _ 6746 3014 PGT-178 PGT 0.45 1480 NEG 63 2951 6 HomoSapiens PGT LLAGIGTVPI central memory T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*02:01 B2M MHCI -5150 chip0420_41970 12.05 8.19 Chip1 T1D_3 T1D _ 6746 2927 BZLF1-190-197 EBV 0.56 2156 NEG 62 2865 10 EBV BZLF1 RAKFKQLL effector memory T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-B*08:01 B2M MHCI -5151 chip0420_378268 11.89 7.36 Chip1 T1D_2 T1D _ 6746 3674 EBV-LMP2A EBV 0.96 700 EBV-LMP2A 58 3616 10 EBV LMP2A CLGGLLTMV effector memory T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*02:01 B2M MHCI -5152 chip0420_117101 6.24 12.63 Chip1 T1D_1 T1D _ 6746 4392 M1 FLU 0.77 1250 M1 55 4337 7 InfluenzaA M1 GILGFVFTL transitional T cells between effector and memory populations PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*02:01 B2M MHCI -5153 chip0420_688052 9.59 11.65 Chip1 T1D_1 T1D _ 6746 2580 EBV-BRLF1 EBV 1.0 1264 NEG 59 2521 9 EBV BRLF1 YVLDHLIVV effector memory T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*02:01 B2M MHCI -5154 chip0420_330160 6.51 13.51 Chip1 healthy_1 healthy _ 6746 3116 M1 FLU 0.8 1250 NEG 57 3059 7 InfluenzaA M1 GILGFVFTL transitional T cells between effector and memory populations PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*02:01 B2M MHCI -5155 chip0420_36677 -1.29 9.79 Chip1 T1D_1 T1D _ 6746 4575 PGT-178 PGT 0.88 1480 PGT-178 63 4512 3 HomoSapiens PGT LLAGIGTVPI Naive T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*02:01 B2M MHCI -5156 chip0420_474767 15.92 11.46 Chip1 T1D_1 T1D TGTGCCAGCTGCTTAGTAGGGACTAGCGGGAGCTATAGCACAGATACGCAGTATTTG CASCLVGTSGSYSTDTQYL TRBV13*01 TRBJ2-3*01 5.0 241.0 _CASCLVGTSGSYSTDTQYL 1 1809 EBV-BRLF1 EBV 1.0 1264 NEG 66 1743 12 EBV BRLF1 YVLDHLIVV effector T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*02:01 B2M MHCI -5157 chip0420_531731 6.21 13.14 Chip1 healthy_1 healthy _ 6746 3502 M1 FLU 0.88 1250 NEG 58 3444 7 InfluenzaA M1 GILGFVFTL transitional T cells between effector and memory populations PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*02:01 B2M MHCI -5158 chip0420_31407 13.91 8.35 Chip1 T1D_1 T1D TGTGCCAGTAGTCCCCACTTGGGTGCGGCGGCCGAGCAGTACTTC CASSPHLGAAAEQYF TRBV19*01 TRBJ2-7*01 30.0 2014.0 _CASSPHLGAAAEQYF 10 3278 EBV-BRLF1 EBV 0.78 1264 EBV-BRLF1 53 3225 10 EBV BRLF1 YVLDHLIVV effector memory T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*02:01 B2M MHCI -5159 chip0420_252298 -3.24 11.1 Chip1 T1D_1 T1D _ 6746 3829 CVB3-P3A CVB 0.78 77 NEG 55 3774 1 CoxsackievirusB P3A GIIYIIYKL Naive T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*02:01 B2M MHCI -5160 chip0420_505305 -3.64 10.3 Chip1 healthy_1 healthy _ 6746 4428 PGT-178 PGT 0.54 1480 PGT-178 65 4363 2 HomoSapiens PGT LLAGIGTVPI Naive T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*02:01 B2M MHCI -5161 chip0420_705249 6.64 12.14 Chip1 healthy_1 healthy _ 6746 5989 M1 FLU 0.77 1250 M1 52 5937 7 InfluenzaA M1 GILGFVFTL transitional T cells between effector and memory populations PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*02:01 B2M MHCI -5162 chip0420_484162 6.28 11.75 Chip1 T1D_1 T1D _ 6746 6033 EBV-LMP2-FLY EBV 0.59 355 NEG 72 5961 7 EBV LMP2 FLYALALLL transitional T cells between effector and memory populations PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*02:01 B2M MHCI -5163 chip0420_273892 9.38 11.64 Chip1 T1D_1 T1D TGCAGTGCTAGAGATGGCACAGGGAATGGCTACACCTTC CSARDGTGNGYTF TRBV20-1*01 TRBJ1-2*01 36.0 1383.0 _CSARDGTGNGYTF 14 2785 EBV-BLMF1 EBV 0.75 2531 NEG 70 2715 9 EBV BLMF1 GLCTLVAML effector memory T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*02:01 B2M MHCI -5164 chip0420_291127 11.67 13.24 Chip1 T1D_1 T1D TGTGCCAGCAGCCCAGTTAGCGGGTCAACCTACGAGCAGTACTTC CASSPVSGSTYEQYF TRBV3-1*01 TRBJ2-7*01 23.0 1337.0 _CASSPVSGSTYEQYF 80 1661 EBV-BLMF1 EBV 0.62 2531 NEG 65 1596 11 EBV BLMF1 GLCTLVAML effector T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*02:01 B2M MHCI -5165 chip0420_245281 -2.51 15.23 Chip1 T1D_1 T1D _ 6746 1971 MART1-ALA MART1 0.71 269 NEG 52 1919 1 HomoSapiens MART1 ALAGIGILTV Naive T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*02:01 B2M MHCI -5166 chip0420_214569 11.44 12.32 Chip1 T1D_1 T1D TGTGCCAGCACACACGGGGGGGTTATCCCAGATACGCAGTATTTT CASTHGGVIPDTQYF TRBV2*01 TRBJ2-3*01 31.0 1727.0 _CASTHGGVIPDTQYF 2 2157 EBV-BLMF1 EBV 1.0 2531 NEG 52 2105 11 EBV BLMF1 GLCTLVAML effector T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*02:01 B2M MHCI -5167 chip0420_375056 -3.17 10.34 Chip1 healthy_1 healthy TGTGCCAGCACCCGACGCACTGAAGCTTTCTTT CASTRRTEAFF TRBV28*01 TRBJ1-1*01 24.0 1757.0 _CASTRRTEAFF 1 4053 PGT-178 PGT 0.6 1480 PGT-178 64 3989 2 HomoSapiens PGT LLAGIGTVPI Naive T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*02:01 B2M MHCI -5168 chip0420_335619 6.49 12.63 Chip1 healthy_1 healthy TGTGCAATGAGCGGGGGCCCTGACGAAACCAGTGGCTCTAGGTTGACCTTT CAMSGGPDETSGSRLTF TRAV12-3*01 TRAJ10*01 44.0 2402.0 CAMSGGPDETSGSRLTF_ 1 3637 M1 FLU 0.67 1250 NEG 72 3565 7 InfluenzaA M1 GILGFVFTL transitional T cells between effector and memory populations PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*02:01 B2M MHCI -5169 chip0420_271549 5.29 9.1 Chip1 healthy_1 healthy _ 6746 3209 M1 FLU 0.83 1250 NEG 58 3151 6 InfluenzaA M1 GILGFVFTL central memory T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*02:01 B2M MHCI -5170 chip0420_661741 13.56 13.64 Chip1 T1D_2 T1D _ 6746 1078 EBV-BLMF1 EBV 0.75 2531 NEG 55 1023 11 EBV BLMF1 GLCTLVAML effector T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*02:01 B2M MHCI -5171 chip0420_50833 10.29 10.69 Chip1 T1D_1 T1D _ 6746 3075 EBV-BRLF1 EBV 0.62 1264 NEG 64 3011 9 EBV BRLF1 YVLDHLIVV effector memory T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*02:01 B2M MHCI -5172 chip0420_705304 14.97 11.66 Chip1 T1D_1 T1D TGTGCCAGCAGCCACTTATTAGGGACAGGTTTTGGCTACACCTTC CASSHLLGTGFGYTF TRBV3-1*01 TRBJ1-2*01 36.0 2008.0 _CASSHLLGTGFGYTF 6 1607 EBV-BRLF1 EBV 0.9 1264 NEG 63 1544 12 EBV BRLF1 YVLDHLIVV effector T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*02:01 B2M MHCI -5173 chip0420_674425 4.89 10.55 Chip1 T1D_2 T1D TGTGCCAGCAGTTTACAGGGTGGGAACTATGGCTACACCTTC CASSLQGGNYGYTF TRBV6-5*01 TRBJ1-2*01 34.0 1536.0 _CASSLQGGNYGYTF 4 2682 EBV-LMP2-FLY EBV 0.94 355 EBV-LMP2-FLY 68 2614 6 EBV LMP2 FLYALALLL central memory T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*02:01 B2M MHCI -5174 chip0420_665546 -2.66 14.95 Chip1 T1D_1 T1D _ 6746 2086 PA-46-54 FLU 0.72 18 NEG 59 2027 1 InfluenzaA PA FMYSDFHFI Naive T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*02:01 B2M MHCI -5175 chip0420_548070 6.08 12.91 Chip1 healthy_1 healthy TGTGCCGCAAGTACGGGGGACCTCCTACGACCAGGTGATACTT CAASTGD??cSYDQVIL TRAV13-1*01 TRAJ50*01 3.0 199.0 TGTGCCCGTAGTATGAGGTCTTCCTACGAGCAGTACTTC CARSMRSSYEQYF TRBV19*01 TRBJ2-7*01 3.0 88.0 CAASTGD??cSYDQVIL_CARSMRSSYEQYF 1 4420 M1 FLU 0.93 1250 NEG 57 4363 7 InfluenzaA M1 GILGFVFTL transitional T cells between effector and memory populations PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*02:01 B2M MHCI -5176 chip0420_666237 -4.04 9.41 Chip1 healthy_1 healthy _ 6746 4274 PGT-178 PGT 0.59 1480 PGT-178 61 4213 2 HomoSapiens PGT LLAGIGTVPI Naive T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*02:01 B2M MHCI -5177 chip0420_532880 -3.69 12.89 Chip1 T1D_2 T1D TGTGCCGTCAGTAACCAGGCAGGAACTGCTCTGATCTTT CAVSNQAGTALIF TRAV12-2*01 TRAJ15*01 13.0 970.0 CAVSNQAGTALIF_ 1 2837 MART1-A28L MART1 0.72 84 NEG 56 2781 1 HomoSapiens MART1 ALGIGILTV Naive T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*02:01 B2M MHCI -5178 chip0420_47566 9.36 13.92 Chip1 T1D_1 T1D TGTGCCAGTAGTATCGGCTACTATGGCTACACCTTC CASSIGYYGYTF TRBV19*01 TRBJ1-2*01 24.0 1777.0 _CASSIGYYGYTF 3 1692 M1 FLU 0.67 1250 NEG 72 1620 11 InfluenzaA M1 GILGFVFTL effector T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*02:01 B2M MHCI -5179 chip0420_549105 7.83 13.56 Chip1 T1D_2 T1D _ 6746 1946 EBV-BRLF1 EBV 0.93 1264 NEG 43 1903 7 EBV BRLF1 YVLDHLIVV transitional T cells between effector and memory populations PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*02:01 B2M MHCI -5180 chip0420_326201 -1.66 12.11 Chip1 healthy_2 healthy _ 6746 3209 PGT-178 PGT 0.45 1480 NEG 58 3151 1 HomoSapiens PGT LLAGIGTVPI Naive T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*02:01 B2M MHCI -5181 chip0420_329823 8.75 13.97 Chip1 T1D_1 T1D _ 6746 2445 M1 FLU 0.89 1250 M1 65 2380 11 InfluenzaA M1 GILGFVFTL effector T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*02:01 B2M MHCI -5182 chip0420_558630 12.23 10.38 Chip1 T1D_1 T1D _ 6746 2948 EBV-BLMF1 EBV 0.91 2531 EBV-BLMF1 60 2888 9 EBV BLMF1 GLCTLVAML effector memory T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*02:01 B2M MHCI -5183 chip0420_697745 13.64 11.46 Chip1 T1D_1 T1D TGTGCCAGTAGTCCCCACTTGGGTGTGGCGGCCGAGCAGTACTTC CASSPHLGVAAEQYF TRBV19*01 TRBJ2-7*01 2.0 140.0 _CASSPHLGVAAEQYF 1 2508 EBV-BRLF1 EBV 1.0 1264 EBV-BRLF1 68 2440 12 EBV BRLF1 YVLDHLIVV effector T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*02:01 B2M MHCI -5184 chip0420_124118 7.03 12.02 Chip1 healthy_1 healthy _ 6746 4743 M1 FLU 0.69 1250 M1 66 4677 7 InfluenzaA M1 GILGFVFTL transitional T cells between effector and memory populations PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*02:01 B2M MHCI -5185 chip0420_515818 11.08 11.98 Chip1 T1D_1 T1D _ 6746 2119 EBV-BLMF1 EBV 1.0 2531 EBV-BLMF1 45 2074 9 EBV BLMF1 GLCTLVAML effector memory T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*02:01 B2M MHCI -5186 chip0420_62900 12.82 11.28 Chip1 T1D_1 T1D TGTGCCACCCAACAGGGGAGGGACAATCAGCCCCAGCATTTT CATQQGRDNQPQHF TRBV28*01 TRBJ1-5*01 29.0 1190.0 _CATQQGRDNQPQHF 1 2407 EBV-BLMF1 EBV 0.75 2531 NEG 56 2351 9 EBV BLMF1 GLCTLVAML effector memory T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*02:01 B2M MHCI -5187 chip0420_228186 6.06 13.87 Chip1 healthy_1 healthy _ 6746 3834 M1 FLU 0.68 1250 M1 48 3786 7 InfluenzaA M1 GILGFVFTL transitional T cells between effector and memory populations PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*02:01 B2M MHCI -5188 chip0420_819062 -2.87 14.37 Chip1 T1D_1 T1D TGCAGTGCTTGCGCCCCCGGGGCAGGGGTATGCGAGCAGTACTTC CSACAPGAGVCEQYF TRBV20-1*01 TRBJ2-7*01 6.0 172.0 _CSACAPGAGVCEQYF 1 2999 PGT-178 PGT 0.73 1480 PGT-178 58 2941 1 HomoSapiens PGT LLAGIGTVPI Naive T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*02:01 B2M MHCI -5189 chip0420_391970 5.12 9.66 Chip1 healthy_2 healthy _ 6746 2391 EBV-LMP1-1 EBV 0.82 237 NEG 63 2328 6 EBV LMP1 YLLEMLWRL central memory T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*02:01 B2M MHCI -5190 chip0420_94367 6.56 12.67 Chip1 healthy_1 healthy TGTGCTTGCGGCGGAAGCCAGGGAAATCTCATCTTT CACGGSQGNLIF TRAV27*01 TRAJ42*01 36.0 2046.0 CACGGSQGNLIF_ 1 4033 M1 FLU 0.64 1250 M1 56 3977 7 InfluenzaA M1 GILGFVFTL transitional T cells between effector and memory populations PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*02:01 B2M MHCI -5191 chip0420_613379 9.94 10.83 Chip1 T1D_1 T1D _ 6746 3251 EBV-BLMF1 EBV 0.57 2531 NEG 67 3184 9 EBV BLMF1 GLCTLVAML effector memory T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*02:01 B2M MHCI -5192 chip0420_495770 8.31 11.62 Chip1 T1D_2 T1D _ 6746 3526 EBV-LMP2-FLY EBV 1.0 355 NEG 67 3459 7 EBV LMP2 FLYALALLL transitional T cells between effector and memory populations PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*02:01 B2M MHCI -5193 chip0420_132418 6.29 12.81 Chip1 healthy_2 healthy TGTGCCAGCAGCTTCGGACAGGGCTCAGATACGCAGTATTTT CASSFGQGSDTQYF TRBV27*01 TRBJ2-3*01 35.0 1976.0 _CASSFGQGSDTQYF 1 3108 M1 FLU 0.64 1250 NEG 55 3053 7 InfluenzaA M1 GILGFVFTL transitional T cells between effector and memory populations PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*02:01 B2M MHCI -5194 chip0420_752485 -2.46 15.41 Chip1 T1D_1 T1D TGCGCCAGCATTAACCGGGCTGGGGAGACCCAGTACTTC CASINRAGETQYF TRBV10-2*01 TRBJ2-5*01 37.0 2377.0 _CASINRAGETQYF 1 1681 PGT-178 PGT 0.76 1480 NEG 48 1633 1 HomoSapiens PGT LLAGIGTVPI Naive T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*02:01 B2M MHCI -5195 chip0420_606578 -1.24 9.27 Chip1 T1D_1 T1D _ 6746 3680 ZNT8-293-300 ZNT8 0.68 17 ZNT8-293-300 59 3621 4 HomoSapiens ZNT8 LAVDGVLSV Naive T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*02:01 B2M MHCI -5196 chip0420_220021 -3.57 13.06 Chip1 healthy_1 healthy _ 6746 4248 PGT-178 PGT 0.61 1480 NEG 47 4201 1 HomoSapiens PGT LLAGIGTVPI Naive T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*02:01 B2M MHCI -5197 chip0420_793316 14.63 9.8 Chip1 T1D_1 T1D TGCAGCGTCGGCTCCAGGGGAACTAATGAAAAACTGTTTTTT CSVGSRGTNEKLFF TRBV29-1*01 TRBJ1-4*01 42.0 2193.0 _CSVGSRGTNEKLFF 283 3331 EBV-BLMF1 EBV 0.71 2531 NEG 60 3271 12 EBV BLMF1 GLCTLVAML effector T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*02:01 B2M MHCI -5198 chip0420_148736 5.46 8.62 Chip1 T1D_2 T1D _ 6746 6619 EBV-LMP2-FLY EBV 1.0 355 NEG 57 6562 6 EBV LMP2 FLYALALLL central memory T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*02:01 B2M MHCI -5199 chip0420_735359 -1.94 10.79 Chip1 T1D_1 T1D _ 6746 3479 HCVNS4B-1807-1816 HCV 0.72 74 NEG 51 3428 3 HCV NS4B LLFNILGGWV Naive T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*02:01 B2M MHCI -5200 chip0420_186369 6.25 12.94 Chip1 healthy_1 healthy _ 6746 4518 M1 FLU 0.8 1250 M1 58 4460 7 InfluenzaA M1 GILGFVFTL transitional T cells between effector and memory populations PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*02:01 B2M MHCI -5201 chip0420_617152 5.32 9.17 Chip1 T1D_1 T1D _ 6746 3924 EBV-LMP2-FLY EBV 0.92 355 EBV-LMP2-FLY 54 3870 6 EBV LMP2 FLYALALLL central memory T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*02:01 B2M MHCI -5202 chip0420_70156 11.79 8.92 Chip1 healthy_2 healthy _ 6746 2576 EBNA3A-193-201 EBV 0.92 1022 NEG 63 2513 10 EBV EBNA3A FLRGRAYGL effector memory T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-B*08:01 B2M MHCI -5203 chip0420_399031 9.62 12.24 Chip1 T1D_2 T1D _ 6746 2099 EBV-BLMF1 EBV 1.0 2531 NEG 59 2040 7 EBV BLMF1 GLCTLVAML transitional T cells between effector and memory populations PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*02:01 B2M MHCI -5204 chip0420_783061 7.88 11.69 Chip1 healthy_1 healthy _ 6746 4274 M1 FLU 0.95 1250 M1 49 4225 7 InfluenzaA M1 GILGFVFTL transitional T cells between effector and memory populations PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*02:01 B2M MHCI -5205 chip0420_290087 10.57 13.72 Chip1 healthy_2 healthy _ 6746 2000 M1 FLU 1.0 1250 NEG 46 1954 11 InfluenzaA M1 GILGFVFTL effector T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*02:01 B2M MHCI -5206 chip0420_201300 12.65 7.96 Chip1 T1D_1 T1D TGTGCCAGCAGTGTGCAGGGCGGTAACTATGGCTACACCTTC CASSVQGGNYGYTF TRBV6-1*01 TRBJ1-2*01 28.0 1619.0 _CASSVQGGNYGYTF 5 2390 EBV-LMP2-FLY EBV 0.73 355 NEG 67 2323 10 EBV LMP2 FLYALALLL effector memory T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*02:01 B2M MHCI -5207 chip0420_316724 13.66 9.45 Chip1 T1D_2 T1D TGTGCCAGCAGTGGAGGGGCGGTCGCGCCGAGTGAGCAGTTCTTC CASSGGAVAPSEQFF TRBV2*01 TRBJ2-1*01 30.0 1703.0 _CASSGGAVAPSEQFF 6 2392 EBV-BLMF1 EBV 0.75 2531 NEG 50 2342 10 EBV BLMF1 GLCTLVAML effector memory T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*02:01 B2M MHCI -5208 chip0420_622988 5.86 8.96 Chip1 T1D_1 T1D TGTGCAGCTAGCCTACGGGGTACAGCAGTGCTTCCAAGATAATCTTT CAASLRGac?SSASKIIF TRAV13-1*01 TRAJ3*01 1.0 64.0 TGTGCCAGCAGCCCGGGGGACGCCCGTGGCGAGCAGTACTTC CASSPGDARGEQYF TRBV5-6*01 TRBJ2-7*01 24.0 2041.0 CAASLRGac?SSASKIIF_CASSPGDARGEQYF 1 7546 EBV-LMP1-1 EBV 0.88 237 EBV-LMP1-1 70 7476 6 EBV LMP1 YLLEMLWRL central memory T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*02:01 B2M MHCI -5209 chip0420_836938 -2.51 15.05 Chip1 T1D_1 T1D _ 6746 2450 PGT-178 PGT 0.67 1480 PGT-178 66 2384 1 HomoSapiens PGT LLAGIGTVPI Naive T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*02:01 B2M MHCI -5210 chip0420_222689 5.98 12.48 Chip1 T1D_1 T1D TGTGCCAGTAGTATGGGGGCGCATGGCTACACCTTC CASSMGAHGYTF TRBV19*01 TRBJ1-2*01 26.0 2075.0 _CASSMGAHGYTF 6 4314 M1 FLU 0.83 1250 M1 63 4251 7 InfluenzaA M1 GILGFVFTL transitional T cells between effector and memory populations PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*02:01 B2M MHCI -5211 chip0420_98709 9.72 9.47 Chip1 T1D_3 T1D TGTGCTCTAAGGGACATGGAATATGGAAACAAACTGGTCTTT CALRDMEYGNKLVF TRAV16*01 TRAJ47*01 47.0 2135.0 CALRDMEYGNKLVF_ 1 3935 BZLF1-190-197 EBV 0.5 2156 BZLF1-190-197 53 3882 8 EBV BZLF1 RAKFKQLL effector memory T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-B*08:01 B2M MHCI -5212 chip0420_499972 6.37 12.25 Chip1 healthy_1 healthy _ 6746 4563 M1 FLU 0.93 1250 M1 56 4507 7 InfluenzaA M1 GILGFVFTL transitional T cells between effector and memory populations PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*02:01 B2M MHCI -5213 chip0420_465978 -3.85 10.57 Chip1 healthy_1 healthy _ 6746 3841 PGT-178 PGT 0.93 1480 PGT-178 59 3782 2 HomoSapiens PGT LLAGIGTVPI Naive T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*02:01 B2M MHCI -5214 chip0420_871785 9.68 12.08 Chip1 healthy_1 healthy _ 6746 2714 EBV-LMP2-FLY EBV 0.75 355 NEG 55 2659 7 EBV LMP2 FLYALALLL transitional T cells between effector and memory populations PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*02:01 B2M MHCI -5215 chip0420_463016 11.27 9.85 Chip1 T1D_3 T1D _ 6746 3662 BZLF1-190-197 EBV 0.91 2156 BZLF1-190-197 47 3615 9 EBV BZLF1 RAKFKQLL effector memory T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-B*08:01 B2M MHCI -5216 chip0420_813691 -3.33 13.6 Chip1 T1D_1 T1D TGTGCCTGGGGCTGGGGTGGCGGGAGGGCTAGCAACGAGCAGTACTTC CAWGWGGGRASNEQYF TRBV30*01 TRBJ2-7*01 33.0 2002.0 _CAWGWGGGRASNEQYF 1 3040 ZNT8-293-300 ZNT8 0.6 17 ZNT8-293-300 43 2997 1 HomoSapiens ZNT8 LAVDGVLSV Naive T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*02:01 B2M MHCI -5217 chip0420_278903 13.68 13.59 Chip1 T1D_1 T1D _ 6746 1047 EBV-BLMF1 EBV 0.77 2531 NEG 56 991 11 EBV BLMF1 GLCTLVAML effector T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*02:01 B2M MHCI -5218 chip0420_510014 6.04 13.22 Chip1 healthy_1 healthy TGTGCCCCCCAAGCCAACACAGGCAAACTAATCTTT CAPQANTGKLIF TRAV12-2*01 TRAJ37*01 2.0 69.0 TGTGTCAGTAGTATAAGAAGTTCCTACGAGCAGTACTTC CVSSIRSSYEQYF TRBV19*01 TRBJ2-7*01 23.0 1605.0 CAPQANTGKLIF_CVSSIRSSYEQYF 1 5077 M1 FLU 0.88 1250 M1 59 5018 7 InfluenzaA M1 GILGFVFTL transitional T cells between effector and memory populations PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*02:01 B2M MHCI -5219 chip0420_399792 -3.57 10.7 Chip1 T1D_1 T1D _ 6746 4281 IAPP-5-13 IAPP 0.59 30 NEG 66 4215 2 HomoSapiens IAPP KLQVFLIVL Naive T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*02:01 B2M MHCI -5220 chip0420_270103 -4.05 8.87 Chip1 T1D_1 T1D TGTGCCACAAGTAACCTTGACAGTAACTATGGCTACACCTTC CATSNLDSNYGYTF TRBV24-1*01 TRBJ1-2*01 5.0 316.0 _CATSNLDSNYGYTF 1 4390 HCVNS3-1073-1081 HCV 0.43 36 NEG 54 4336 2 HCV NS3 CINGVCWTV Naive T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*02:01 B2M MHCI -5221 chip0420_663178 7.28 12.87 Chip1 healthy_1 healthy TGTGCTTTCATGATTAATGCTGGTGGTACTAGCTATGGAAAGCTGACATTT CAFMINAGGTSYGKLTF TRAV38-1*01 TRAJ52*01 61.0 1958.0 CAFMINAGGTSYGKLTF_ 2 3141 M1 FLU 0.82 1250 NEG 54 3087 7 InfluenzaA M1 GILGFVFTL transitional T cells between effector and memory populations PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*02:01 B2M MHCI -5222 chip0420_172313 -2.45 10.31 Chip1 T1D_3 T1D TGTGCTACCCTACCAATAAACCAGTGGCACTAGGTTTACCTTT CATLPIN??cSGTRFTF TRAV27*01 TRAJ48*01,TRAJ10*01 3.0 29.0 CATLPIN??cSGTRFTF_ 1 4955 NP140-148 FLU 0.8 102 NP140-148 48 4907 3 InfluenzaA NP HSNLNDATY Naive T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*01:01 B2M MHCI -5223 chip0420_12595 0.26 8.72 Chip1 healthy_2 healthy _ 6746 3361 IAPP-STN-9 IAPP 0.68 48 IAPP-STN-9 53 3308 4 HomoSapiens IAPP STNVGSNTY Naive T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*01:01 B2M MHCI -5224 chip0420_467843 6.94 12.8 Chip1 healthy_1 healthy TGCATCCTGGGGGACTGGTCTCGGGCTGGAGAGCACGTGCTTTT CILGDWSc?gGWRARAF TRAV26-2*01 TRAJ5*01 4.0 82.0 CILGDWSc?gGWRARAF_ 1 3889 M1 FLU 0.65 1250 M1 59 3830 7 InfluenzaA M1 GILGFVFTL transitional T cells between effector and memory populations PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*02:01 B2M MHCI -5225 chip0420_633811 7.42 13.16 Chip1 healthy_1 healthy TGTGCCAGTAGTATCAGGAGTGCCTACGAGCAGTACTTC CASSIRSAYEQYF TRBV19*01 TRBJ2-7*01 1.0 19.0 _CASSIRSAYEQYF 11 3471 M1 FLU 0.5 1250 NEG 62 3409 7 InfluenzaA M1 GILGFVFTL transitional T cells between effector and memory populations PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*02:01 B2M MHCI -5226 chip0420_735302 6.03 13.6 Chip1 healthy_1 healthy TGTGCCAGTAGTATAAGAAGTTCCTACGAGCAGTACTTC CASSIRSSYEQYF TRBV19*01 TRBJ2-7*01 27.0 1932.0 _CASSIRSSYEQYF 36 3483 M1 FLU 0.73 1250 M1 57 3426 7 InfluenzaA M1 GILGFVFTL transitional T cells between effector and memory populations PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*02:01 B2M MHCI -5227 chip0420_206247 6.03 11.48 Chip1 T1D_1 T1D AGTGCCAGCCGTTTTCTCGGGACAGGTCTCAACGAGCAGTACTTC SASRFLGTGLNEQYF TRBV28*01 TRBJ2-7*01 8.0 264.0 _SASRFLGTGLNEQYF 1 3871 EBV-LMP2-FLY EBV 0.89 355 EBV-LMP2-FLY 63 3808 7 EBV LMP2 FLYALALLL transitional T cells between effector and memory populations PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*02:01 B2M MHCI -5228 chip0420_864866 10.67 13.86 Chip1 T1D_1 T1D TGTGCCAGCAGTGTGCGGGGGGGTAACTATGGCTACACCTTC CASSVRGGNYGYTF TRBV6-1*01 TRBJ1-2*01 46.0 1811.0 _CASSVRGGNYGYTF 1 1474 EBV-LMP2-FLY EBV 0.67 355 NEG 55 1419 11 EBV LMP2 FLYALALLL effector T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*02:01 B2M MHCI -5229 chip0420_598057 11.03 13.06 Chip1 T1D_2 T1D _ 6746 2095 EBV-BRLF1 EBV 0.83 1264 EBV-BRLF1 58 2037 11 EBV BRLF1 YVLDHLIVV effector T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*02:01 B2M MHCI -5230 chip0420_393727 7.59 7.74 Chip1 T1D_1 T1D CGTGCTGTGCCCCAGGGGGGTTTTCTGGTGGCTCCCATCCGCTGCTTTTT RAVPQGGFc?tGGSHPLLF TRAV20*01 TRAJ4*01 40.0 2103.0 RAVPQGGFc?tGGSHPLLF_ 1 2467 M1 FLU 0.8 1250 NEG 59 2408 8 InfluenzaA M1 GILGFVFTL effector memory T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*02:01 B2M MHCI -5231 chip0420_871355 13.88 8.16 Chip1 T1D_2 T1D TGCGCCAGCAGAGCGGGAGCCGGGGATACGCAGTATTTT CASRAGAGDTQYF TRBV10-2*01 TRBJ2-3*01 33.0 2011.0 _CASRAGAGDTQYF 59 2433 EBV-BLMF1 EBV 0.89 2531 NEG 58 2375 10 EBV BLMF1 GLCTLVAML effector memory T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*02:01 B2M MHCI -5232 chip0420_642856 8.04 13.75 Chip1 T1D_1 T1D _ 6746 2655 M1 FLU 0.65 1250 NEG 58 2597 7 InfluenzaA M1 GILGFVFTL transitional T cells between effector and memory populations PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*02:01 B2M MHCI -5233 chip0420_604312 6.12 13.42 Chip1 T1D_1 T1D _ 6746 3920 M1 FLU 0.68 1250 M1 59 3861 7 InfluenzaA M1 GILGFVFTL transitional T cells between effector and memory populations PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*02:01 B2M MHCI -5234 chip0420_843550 11.72 8.88 Chip1 T1D_3 T1D TGTGCCAGCAGTCTCCACCTTCGACAGGATGAACAGCCCCAGCATTTT CASSLHLRQDEQPQHF TRBV28*01 TRBJ1-5*01 17.0 409.0 _CASSLHLRQDEQPQHF 12 2852 EBNA3A-158-166 EBV 1.0 444 NEG 59 2793 10 EBV EBNA3A QAKWRLQTL effector memory T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-B*08:01 B2M MHCI -5235 chip0420_793408 12.78 8.67 Chip1 T1D_2 T1D TGCAGCGTTGGGGGCAGCTTCTATGGCTACACCTTC CSVGGSFYGYTF TRBV29-1*01 TRBJ1-2*01 15.0 1535.0 _CSVGGSFYGYTF 42 1484 EBV-BLMF1 EBV 0.77 2531 NEG 60 1424 10 EBV BLMF1 GLCTLVAML effector memory T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*02:01 B2M MHCI -5236 chip0420_645681 8.75 7.91 Chip1 T1D_1 T1D _ 6746 6109 EBV-BRLF1 EBV 0.89 1264 EBV-BRLF1 54 6055 8 EBV BRLF1 YVLDHLIVV effector memory T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*02:01 B2M MHCI -5237 chip0420_485426 13.41 11.57 Chip1 T1D_3 T1D _ 6746 2445 BZLF1-190-197 EBV 0.5 2156 NEG 61 2384 12 EBV BZLF1 RAKFKQLL effector T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-B*08:01 B2M MHCI -5238 chip0420_437707 12.28 7.78 Chip1 T1D_2 T1D _ 6746 2201 EBV-BLMF1 EBV 0.75 2531 NEG 53 2148 10 EBV BLMF1 GLCTLVAML effector memory T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*02:01 B2M MHCI -5239 chip0420_473691 -3.01 10.59 Chip1 T1D_2 T1D TGTGCCAGCAGCTTCGGGACTTATGATGGCTACACCTTC CASSFGTYDGYTF TRBV7-6*01 TRBJ1-2*01 1.0 11.0 _CASSFGTYDGYTF 1 3620 EBV-LMP1-1 EBV 0.94 237 EBV-LMP1-1 54 3566 3 EBV LMP1 YLLEMLWRL Naive T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*02:01 B2M MHCI -5240 chip0420_781082 -0.91 6.55 Chip1 T1D_1 T1D _ 6746 5803 PGT-178 PGT 0.61 1480 PGT-178 68 5735 3 HomoSapiens PGT LLAGIGTVPI Naive T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*02:01 B2M MHCI -5241 chip0420_81451 12.37 6.11 Chip1 T1D_1 T1D TGCAGCGTCGGCTCCAGGGGAACTAATGAAAAACTGTTTTTT CSVGSRGTNEKLFF TRBV29-1*01 TRBJ1-4*01 15.0 938.0 _CSVGSRGTNEKLFF 283 5082 EBV-BLMF1 EBV 0.43 2531 NEG 76 5006 10 EBV BLMF1 GLCTLVAML effector memory T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*02:01 B2M MHCI -5242 chip0420_784224 -2.8 9.05 Chip1 healthy_2 healthy TGTGCCAGCAGCGTAGATAACGGGGCTGAAGCTTTCTTT CASSVDNGAEAFF TRBV9*01 TRBJ1-1*01 1.0 89.0 _CASSVDNGAEAFF 2 5009 PGT-178 PGT 0.8 1480 PGT-178 58 4951 2 HomoSapiens PGT LLAGIGTVPI Naive T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*02:01 B2M MHCI -5243 chip0420_755211 -2.37 15.55 Chip1 healthy_1 healthy TGTGCCGGGGAAACGGGAACCTACAAATACATCTTT CAGETGTYKYIF TRAV29/DV5*01 TRAJ40*01 6.0 342.0 CAGETGTYKYIF_ 1 1870 PREINS-2-10 INS 0.45 37 NEG 45 1825 1 HomoSapiens PREINS ALWMRLLPL Naive T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*02:01 B2M MHCI -5244 chip0420_553318 -2.13 9.45 Chip1 healthy_1 healthy _ 6746 5135 MART1-A28L MART1 0.78 84 MART1-A28L 57 5078 3 HomoSapiens MART1 ALGIGILTV Naive T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*02:01 B2M MHCI -5245 chip0420_335913 6.11 13.98 Chip1 healthy_2 healthy TGTGCCAGTAGTATAAATGGGGGCAGCAGGAATGGCTACACCTTC CASSINGGSRNGYTF TRBV19*01 TRBJ1-2*01 3.0 139.0 _CASSINGGSRNGYTF 1 3407 M1 FLU 0.57 1250 NEG 48 3359 7 InfluenzaA M1 GILGFVFTL transitional T cells between effector and memory populations PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*02:01 B2M MHCI -5246 chip0420_262940 6.14 13.92 Chip1 T1D_1 T1D TGTGGCACTCAAGAGAATGACAGCTGGGGGAAATTGCAGTTT CGTQENDSWGKLQF TRAV30*01 TRAJ24*01 2.0 255.0 TGTGCCAGTAGTGTCAGGGCAGGGGAGACCCAATACTTC CASSVRAGETQYF TRBV19*01 TRBJ2-5*01 28.0 1019.0 CGTQENDSWGKLQF_CASSVRAGETQYF 9 5360 M1 FLU 0.88 1250 M1 56 5304 7 InfluenzaA M1 GILGFVFTL transitional T cells between effector and memory populations PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*02:01 B2M MHCI -5247 chip0420_864378 7.66 13.01 Chip1 healthy_2 healthy _ 6746 2491 M1 FLU 0.67 1250 NEG 61 2430 7 InfluenzaA M1 GILGFVFTL transitional T cells between effector and memory populations PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*02:01 B2M MHCI -5248 chip0420_835089 11.32 14.1 Chip1 T1D_1 T1D TGTGCCAGTAGTATAGAGGGGACTAGCGGCTACGAGCAGTACTTC CASSIEGTSGYEQYF TRBV19*01 TRBJ2-7*01 30.0 1261.0 _CASSIEGTSGYEQYF 1 747 M1 FLU 1.0 1250 NEG 53 694 11 InfluenzaA M1 GILGFVFTL effector T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*02:01 B2M MHCI -5249 chip0420_490844 -3.81 11.51 Chip1 healthy_1 healthy _ 6746 3280 EBV-LMP1-1 EBV 0.62 237 NEG 53 3227 1 EBV LMP1 YLLEMLWRL Naive T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*02:01 B2M MHCI -5250 chip0420_311651 -3.05 9.58 Chip1 healthy_1 healthy _ 6746 5483 MART1-ALA MART1 0.5 269 MART1-ALA 49 5434 2 HomoSapiens MART1 ALAGIGILTV Naive T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*02:01 B2M MHCI -5251 chip0420_85355 11.61 12.35 Chip1 T1D_1 T1D _ 6746 1855 EBV-BRLF1 EBV 0.6 1264 EBV-BRLF1 51 1804 11 EBV BRLF1 YVLDHLIVV effector T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*02:01 B2M MHCI -5252 chip0420_114741 7.26 13.27 Chip1 healthy_1 healthy _ 6746 3064 M1 FLU 0.89 1250 M1 45 3019 7 InfluenzaA M1 GILGFVFTL transitional T cells between effector and memory populations PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*02:01 B2M MHCI -5253 chip0420_661111 -2.58 15.04 Chip1 T1D_2 T1D TGTGCTGGAGCGGGTCACTATGGTCAGAATTTTGTCTTT CAGAGHYGQNFVF TRAV27*01 TRAJ26*01 56.0 2135.0 CAGAGHYGQNFVF_ 1 1741 PTPRN-172-180 PTPRN 0.46 4 NEG 61 1680 1 HomoSapiens PTPRN SLSPLQAEL Naive T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*02:01 B2M MHCI -5254 chip0420_82315 11.51 9.85 Chip1 T1D_1 T1D TGTGCAGCTTCGAATGCTGGCAACAACCGTAAGCTGATTTGG CAASNAGNNRKLIW TRAV13-1*01 TRAJ38*01 48.0 3096.0 TGTGCCAGCACACACGGGGGGGTTATCCCAGATACGCAGTATTTT CASTHGGVIPDTQYF TRBV2*01 TRBJ2-3*01 3.0 67.0 CAASNAGNNRKLIW_CASTHGGVIPDTQYF 1 3042 EBV-BLMF1 EBV 0.42 2531 NEG 58 2984 9 EBV BLMF1 GLCTLVAML effector memory T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*02:01 B2M MHCI -5255 chip0420_140090 9.12 11.39 Chip1 T1D_3 T1D _ 6746 3399 BZLF1-190-197 EBV 0.6 2156 NEG 62 3337 9 EBV BZLF1 RAKFKQLL effector memory T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-B*08:01 B2M MHCI -5256 chip0420_58633 -2.73 14.86 Chip1 T1D_1 T1D _ 6746 2316 HCV-K1Y HCV 0.46 15 NEG 48 2268 1 HCV POL YLVALGINAV Naive T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*02:01 B2M MHCI -5257 chip0420_56890 8.69 13.91 Chip1 T1D_1 T1D _ 6746 2034 M1 FLU 0.86 1250 NEG 51 1983 11 InfluenzaA M1 GILGFVFTL effector T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*02:01 B2M MHCI -5258 chip0420_417303 12.56 7.97 Chip1 T1D_2 T1D TGTGCCAGCAGTTACCAGGGGGGGGCGGAATATGGCTACACCTTC CASSYQGGAEYGYTF TRBV6-5*01 TRBJ1-2*01 28.0 1075.0 _CASSYQGGAEYGYTF 1 2156 EBV-LMP2-FLY EBV 0.79 355 NEG 57 2099 10 EBV LMP2 FLYALALLL effector memory T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*02:01 B2M MHCI -5259 chip0420_142924 -3.7 8.56 Chip1 healthy_1 healthy _ 6746 5126 GAD65-141-149 GAD65 0.5 9 GAD65-141-149 43 5083 2 HomoSapiens GAD65 LLQEYNWEL Naive T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*02:01 B2M MHCI -5260 chip0420_609233 6.02 13.89 Chip1 healthy_1 healthy _ 6746 3689 M1 FLU 0.78 1250 M1 55 3634 7 InfluenzaA M1 GILGFVFTL transitional T cells between effector and memory populations PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*02:01 B2M MHCI -5261 chip0420_850454 -3.0 12.92 Chip1 T1D_2 T1D _ 6746 3390 PGT-178 PGT 0.68 1480 PGT-178 48 3342 1 HomoSapiens PGT LLAGIGTVPI Naive T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*02:01 B2M MHCI -5262 chip0420_336057 12.41 10.54 Chip1 T1D_2 T1D TGTGCTACGGGTAGGGTGGTGGAGCAGTGCTTCCAAGATAATCTTT CATGRVVga??gcSASKIIF TRAV17*01 TRAJ3*01 5.0 509.0 TGTGCCAGCAGTGCGGGACAGGTGGCCCCGGGCGAGCAGTACTTC CASSAGQVAPGEQYF TRBV2*01 TRBJ2-7*01 3.0 133.0 CATGRVVga??gcSASKIIF_CASSAGQVAPGEQYF 1 3262 EBV-BLMF1 EBV 0.83 2531 NEG 65 3197 9 EBV BLMF1 GLCTLVAML effector memory T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*02:01 B2M MHCI -5263 chip0420_623351 6.24 13.0 Chip1 healthy_1 healthy TGTGCCAGCAGTTTTAAGAACGCTGAAGCTTTCTTT CASSFKNAEAFF TRBV27*01 TRBJ1-1*01 6.0 233.0 _CASSFKNAEAFF 1 4432 M1 FLU 0.96 1250 M1 60 4372 7 InfluenzaA M1 GILGFVFTL transitional T cells between effector and memory populations PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*02:01 B2M MHCI -5264 chip0420_517824 12.6 9.05 Chip1 T1D_2 T1D TGTGCTTCCCTAACCCCGGGGGCTTCCAAGATAATCTTT CASLTPGASKIIF TRAV8-6*01 TRAJ3*01 16.0 1195.0 TGTGCCAGCAGCTCGGGACTAGTCGCCCCCGGGGAGCTGTTTTTT CASSSGLVAPGELFF TRBV2*01 TRBJ2-2*01 45.0 3442.0 CASLTPGASKIIF_CASSSGLVAPGELFF 38 2248 EBV-BLMF1 EBV 0.5 2531 NEG 67 2181 10 EBV BLMF1 GLCTLVAML effector memory T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*02:01 B2M MHCI -5265 chip0420_331497 -3.1 12.85 Chip1 T1D_1 T1D _ 6746 2877 PGT-178 PGT 0.71 1480 PGT-178 56 2821 1 HomoSapiens PGT LLAGIGTVPI Naive T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*02:01 B2M MHCI -5266 chip0420_812861 8.77 11.52 Chip1 T1D_1 T1D _ 6746 3056 EBV-LMP2-FLY EBV 0.71 355 NEG 54 3002 7 EBV LMP2 FLYALALLL transitional T cells between effector and memory populations PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*02:01 B2M MHCI -5267 chip0420_742285 -2.4 15.22 Chip1 T1D_1 T1D _ 6746 2128 PGT-178 PGT 0.47 1480 PGT-178 51 2077 1 HomoSapiens PGT LLAGIGTVPI Naive T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*02:01 B2M MHCI -5268 chip0420_611638 13.24 10.74 Chip1 T1D_1 T1D _ 6746 2845 EBV-BLMF1 EBV 0.93 2531 NEG 53 2792 9 EBV BLMF1 GLCTLVAML effector memory T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*02:01 B2M MHCI -5269 chip0420_42542 -2.17 15.9 Chip1 healthy_1 healthy _ 6746 1186 PGT-178 PGT 0.89 1480 NEG 59 1127 1 HomoSapiens PGT LLAGIGTVPI Naive T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*02:01 B2M MHCI -5270 chip0420_594110 -1.19 6.77 Chip1 healthy_1 healthy _ 6746 5940 PGT-178 PGT 0.75 1480 PGT-178 53 5887 3 HomoSapiens PGT LLAGIGTVPI Naive T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*02:01 B2M MHCI -5271 chip0420_200457 -4.26 10.7 Chip1 healthy_1 healthy TGTGCCAGCAGCTTCTCCGAGGGGATCCAGGAGACCCAGTACTTC CASSFSEGIQETQYF TRBV7-9*01 TRBJ2-5*01 44.0 2399.0 _CASSFSEGIQETQYF 1 5134 PGT-178 PGT 0.44 1480 NEG 54 5080 2 HomoSapiens PGT LLAGIGTVPI Naive T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*02:01 B2M MHCI -5272 chip0420_823092 6.38 12.2 Chip1 healthy_1 healthy TGTGCAGGCGCAGCCGGGAGGAGGTGCTGACGGACTCACCTTT CAGAAGR??aGADGLTF TRAV27*01 TRAJ45*01 10.0 679.0 TTCGCCAGCAGCGCGGGACAGGGACTTCCCTACGAGCAGTACTTC FASSAGQGLPYEQYF TRBV5-1*01 TRBJ2-7*01 31.0 2053.0 CAGAAGR??aGADGLTF_FASSAGQGLPYEQYF 1 5231 M1 FLU 0.8 1250 M1 55 5176 7 InfluenzaA M1 GILGFVFTL transitional T cells between effector and memory populations PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*02:01 B2M MHCI -5273 chip0420_123230 -2.16 15.91 Chip1 healthy_2 healthy TGTGCCAGCAGCGAGAGCGGGATTGGGAGAGATACGCAGTATTTT CASSESGIGRDTQYF TRBV9*01 TRBJ2-3*01 34.0 1717.0 _CASSESGIGRDTQYF 1 1080 ZNT8-YAY-8 ZNT8 0.64 54 NEG 47 1033 1 HomoSapiens ZNT8 YAYAKWKL Naive T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-B*08:01 B2M MHCI -5274 chip0420_267133 7.79 13.21 Chip1 healthy_1 healthy _ 6746 3281 M1 FLU 0.84 1250 M1 58 3223 7 InfluenzaA M1 GILGFVFTL transitional T cells between effector and memory populations PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*02:01 B2M MHCI -5275 chip0420_552763 -3.86 11.93 Chip1 T1D_1 T1D TGCGCCAGCAGTCAAAACCGGGACAGACGGGCTCAAGAGACCCAGTACTTC CASSQNRDRRAQETQYF TRBV4-3*01 TRBJ2-5*01 71.0 2492.0 _CASSQNRDRRAQETQYF 1 2899 PGT-178 PGT 0.51 1480 PGT-178 38 2861 1 HomoSapiens PGT LLAGIGTVPI Naive T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*02:01 B2M MHCI -5276 chip0420_33655 5.95 12.19 Chip1 healthy_1 healthy _ 6746 5310 M1 FLU 0.96 1250 M1 58 5252 7 InfluenzaA M1 GILGFVFTL transitional T cells between effector and memory populations PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*02:01 B2M MHCI -5277 chip0420_499176 5.1 9.46 Chip1 T1D_1 T1D _ 6746 3083 EBV-LMP2-FLY EBV 0.9 355 EBV-LMP2-FLY 63 3020 6 EBV LMP2 FLYALALLL central memory T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*02:01 B2M MHCI -5278 chip0420_71957 10.39 10.43 Chip1 T1D_2 T1D TGTGCCGCGTTTGCAGGTTACATGCTCCCCTAT CAAFAGYMLPY TRAV29/DV5*01 TRAJ39*01 7.0 749.0 CAAFAGYMLPY_ 1 3654 EBV-BLMF1 EBV 0.75 2531 NEG 52 3602 9 EBV BLMF1 GLCTLVAML effector memory T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*02:01 B2M MHCI -5279 chip0420_194161 9.13 13.78 Chip1 healthy_1 healthy TGTGCACCGGTCTAGGGGGCACAGGCTTTCAGAAACTTGTATTT CAPV*GAc?aGFQKLVF TRAV25*01 TRAJ8*01 1.0 10.0 CAPV*GAc?aGFQKLVF_ 1 1925 EBV-BRLF1 EBV 1.0 1264 NEG 49 1876 11 EBV BRLF1 YVLDHLIVV effector T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*02:01 B2M MHCI -5280 chip0420_383163 14.18 10.83 Chip1 T1D_1 T1D _ 6746 2785 EBV-BLMF1 EBV 0.75 2531 NEG 49 2736 12 EBV BLMF1 GLCTLVAML effector T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*02:01 B2M MHCI -5281 chip0420_2920 -4.43 9.32 Chip1 healthy_1 healthy _ 6746 5805 ZNT8-115-123 ZNT8 0.53 74 NEG 52 5753 2 HomoSapiens ZNT8 LLSLFSLWL Naive T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*02:01 B2M MHCI -5282 chip0420_723101 11.48 12.02 Chip1 T1D_2 T1D _ 6746 1636 EBV-BRLF1 EBV 1.0 1264 NEG 44 1592 11 EBV BRLF1 YVLDHLIVV effector T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*02:01 B2M MHCI -5283 chip0420_690185 -0.86 6.73 Chip1 healthy_1 healthy _ 6746 9035 PGT-178 PGT 0.74 1480 PGT-178 46 8989 3 HomoSapiens PGT LLAGIGTVPI Naive T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*02:01 B2M MHCI -5284 chip0420_478163 7.24 12.79 Chip1 healthy_1 healthy _ 6746 4329 M1 FLU 0.95 1250 M1 53 4276 7 InfluenzaA M1 GILGFVFTL transitional T cells between effector and memory populations PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*02:01 B2M MHCI -5285 chip0420_174833 13.12 13.44 Chip1 T1D_1 T1D _ 6746 1729 EBV-BRLF1 EBV 0.92 1264 NEG 47 1682 11 EBV BRLF1 YVLDHLIVV effector T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*02:01 B2M MHCI -5286 chip0420_573890 11.39 13.65 Chip1 T1D_1 T1D TGTGCCAGCAGTCCGGACCAAACTAGCTCCTACAATGAGCAGTTCTTC CASSPDQTSSYNEQFF TRBV27*01 TRBJ2-1*01 10.0 486.0 _CASSPDQTSSYNEQFF 47 1931 EBV-BRLF1 EBV 0.94 1264 EBV-BRLF1 55 1876 11 EBV BRLF1 YVLDHLIVV effector T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*02:01 B2M MHCI -5287 chip0420_864590 11.69 11.95 Chip1 T1D_2 T1D _ 6746 2334 EBV-BRLF1 EBV 0.96 1264 EBV-BRLF1 47 2287 11 EBV BRLF1 YVLDHLIVV effector T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*02:01 B2M MHCI -5288 chip0420_162481 -4.01 8.76 Chip1 T1D_1 T1D _ 6746 5541 PGT-178 PGT 0.68 1480 PGT-178 56 5485 2 HomoSapiens PGT LLAGIGTVPI Naive T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*02:01 B2M MHCI -5289 chip0420_839709 11.66 10.48 Chip1 T1D_1 T1D _ 6746 3276 EBV-BRLF1 EBV 0.67 1264 NEG 49 3227 9 EBV BRLF1 YVLDHLIVV effector memory T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*02:01 B2M MHCI -5290 chip0420_716297 15.91 11.95 Chip1 T1D_1 T1D TGCAGCGTCGGCTCCAGGGGAACTAATGAAAAACTGTTTTTT CSVGSRGTNEKLFF TRBV29-1*01 TRBJ1-4*01 105.0 5029.0 _CSVGSRGTNEKLFF 283 1588 EBV-BLMF1 EBV 1.0 2531 NEG 63 1525 12 EBV BLMF1 GLCTLVAML effector T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*02:01 B2M MHCI -5291 chip0420_172409 6.81 13.63 Chip1 healthy_1 healthy TGTGCCAGTAGTACGCGGAGCTCCTACGAGCAGTACTTC CASSTRSSYEQYF TRBV19*01 TRBJ2-7*01 33.0 2015.0 _CASSTRSSYEQYF 7 3657 M1 FLU 0.67 1250 M1 47 3610 7 InfluenzaA M1 GILGFVFTL transitional T cells between effector and memory populations PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*02:01 B2M MHCI -5292 chip0420_330047 13.38 9.88 Chip1 T1D_1 T1D TGTGCCAGCAGTCCGGACCAAACTAGCTCCTACAATGAGCAGTTCTTC CASSPDQTSSYNEQFF TRBV27*01 TRBJ2-1*01 30.0 1897.0 _CASSPDQTSSYNEQFF 47 2727 EBV-BRLF1 EBV 0.89 1264 EBV-BRLF1 54 2673 10 EBV BRLF1 YVLDHLIVV effector memory T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*02:01 B2M MHCI -5293 chip0420_772711 -4.49 9.22 Chip1 healthy_1 healthy _ 6746 4760 PGT-178 PGT 0.54 1480 PGT-178 44 4716 2 HomoSapiens PGT LLAGIGTVPI Naive T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*02:01 B2M MHCI -5294 chip0420_615124 9.77 8.92 Chip1 healthy_1 healthy _ 6746 5141 M1 FLU 0.65 1250 M1 52 5089 8 InfluenzaA M1 GILGFVFTL effector memory T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*02:01 B2M MHCI -5295 chip0420_834556 8.89 13.87 Chip1 healthy_1 healthy _ 6746 2109 M1 FLU 0.94 1250 M1 49 2060 11 InfluenzaA M1 GILGFVFTL effector T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*02:01 B2M MHCI -5296 chip0420_297689 -4.39 9.74 Chip1 healthy_1 healthy _ 6746 4749 PGT-178 PGT 0.48 1480 PGT-178 52 4697 2 HomoSapiens PGT LLAGIGTVPI Naive T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*02:01 B2M MHCI -5297 chip0420_861428 12.63 11.23 Chip1 T1D_1 T1D _ 6746 1967 EBV-BLMF1 EBV 0.5 2531 NEG 45 1922 9 EBV BLMF1 GLCTLVAML effector memory T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*02:01 B2M MHCI -5298 chip0420_171825 6.51 12.47 Chip1 healthy_1 healthy _ 6746 3426 M1 FLU 0.77 1250 M1 51 3375 7 InfluenzaA M1 GILGFVFTL transitional T cells between effector and memory populations PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*02:01 B2M MHCI -5299 chip0420_482756 12.04 13.34 Chip1 T1D_1 T1D TGTGCCAGCAGCCCAGTTAGCGGGTCAACCTACGAGCAGTACTTC CASSPVSGSTYEQYF TRBV3-1*01 TRBJ2-7*01 17.0 717.0 _CASSPVSGSTYEQYF 80 1158 EBV-BLMF1 EBV 0.86 2531 NEG 41 1117 11 EBV BLMF1 GLCTLVAML effector T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*02:01 B2M MHCI -5300 chip0420_381598 7.52 13.46 Chip1 healthy_1 healthy _ 6746 2878 M1 FLU 0.67 1250 NEG 54 2824 7 InfluenzaA M1 GILGFVFTL transitional T cells between effector and memory populations PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*02:01 B2M MHCI -5301 chip0420_712688 11.7 10.53 Chip1 T1D_1 T1D TGTGCTCTCTATAACACCGACAAGCTCATCTTT CALYNTDKLIF TRAV9-2*01 TRAJ34*01 2.0 94.0 TGTGCCAGCAGCCCAGTTAGCGGGTCAACCTACGAGCAGTACTTC CASSPVSGSTYEQYF TRBV3-1*01 TRBJ2-7*01 76.0 3879.0 CALYNTDKLIF_CASSPVSGSTYEQYF 15 3062 EBV-BLMF1 EBV 0.95 2531 EBV-BLMF1 50 3012 9 EBV BLMF1 GLCTLVAML effector memory T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*02:01 B2M MHCI -5302 chip0420_600616 -4.11 11.88 Chip1 T1D_1 T1D TGTGCAGCAAGTTATGAGAAATTAACCTTT CAASYEKLTF TRAV13-1*01 TRAJ48*01 28.0 2117.0 TGTGCCAGCAGTTTCGACGGGGGGGCTCCTGGTGAGCAGTTCTTC CASSFDGGAPGEQFF TRBV12-3*01,TRBV12-4*01 TRBJ2-1*01 8.0 569.0 CAASYEKLTF_CASSFDGGAPGEQFF 1 3486 IAPP-5-13 IAPP 0.62 30 NEG 47 3439 1 HomoSapiens IAPP KLQVFLIVL Naive T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*02:01 B2M MHCI -5303 chip0420_607145 -2.81 13.27 Chip1 T1D_1 T1D TGTGCAATGAGCTCCTCTAACTTTGGTAATGAGTAATTAACCTTT CAMSSSNFGNE*LTF TRAV12-3*01 TRAJ48*01 13.0 440.0 TGTGCCAGCAGTTACTCTCGCAGCAGCACTGAAGCTTTCTTT CASSYSRSSTEAFF TRBV6-5*01 TRBJ1-1*01 4.0 95.0 CAMSSSNFGNE*LTF_CASSYSRSSTEAFF 1 3169 PGT-178 PGT 0.55 1480 PGT-178 61 3108 1 HomoSapiens PGT LLAGIGTVPI Naive T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*02:01 B2M MHCI -5304 chip0420_376673 8.08 14.01 Chip1 healthy_1 healthy _ 6746 2078 M1 FLU 0.82 1250 M1 52 2026 7 InfluenzaA M1 GILGFVFTL transitional T cells between effector and memory populations PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*02:01 B2M MHCI -5305 chip0420_748334 -2.71 14.11 Chip1 T1D_1 T1D TGTGCCTGCAGGTCTCTGGCGGGGGGGATTCCTGAGCAGTTCTTC CACRSLAGGIPEQFF TRBV28*01 TRBJ2-1*01 8.0 452.0 _CACRSLAGGIPEQFF 1 2718 PGT-178 PGT 0.77 1480 PGT-178 51 2667 1 HomoSapiens PGT LLAGIGTVPI Naive T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*02:01 B2M MHCI -5306 chip0420_595161 11.14 11.94 Chip1 T1D_2 T1D _ 6746 1975 EBV-BRLF1 EBV 1.0 1264 EBV-BRLF1 46 1929 9 EBV BRLF1 YVLDHLIVV effector memory T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*02:01 B2M MHCI -5307 chip0420_561306 11.46 7.93 Chip1 T1D_2 T1D _ 6746 2951 EBV-BRLF1 EBV 0.98 1264 EBV-BRLF1 41 2910 10 EBV BRLF1 YVLDHLIVV effector memory T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*02:01 B2M MHCI -5308 chip0420_81909 10.44 13.95 Chip1 T1D_1 T1D _ 6746 929 M1 FLU 1.0 1250 NEG 50 879 11 InfluenzaA M1 GILGFVFTL effector T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*02:01 B2M MHCI -5309 chip0420_224152 13.18 9.94 Chip1 T1D_1 T1D TGTGCCAGCAGTGCCGGGACAGTTGCACCCGGGGAGCTGTTTTTT CASSAGTVAPGELFF TRBV2*01 TRBJ2-2*01 26.0 1699.0 _CASSAGTVAPGELFF 21 2791 EBV-BLMF1 EBV 0.5 2531 NEG 49 2742 10 EBV BLMF1 GLCTLVAML effector memory T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*02:01 B2M MHCI -5310 chip0420_689365 8.55 11.56 Chip1 healthy_1 healthy _ 6746 3310 M1 FLU 0.66 1250 M1 50 3260 7 InfluenzaA M1 GILGFVFTL transitional T cells between effector and memory populations PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*02:01 B2M MHCI -5311 chip0420_102893 5.81 13.48 Chip1 T1D_1 T1D _ 6746 4945 M1 FLU 0.87 1250 M1 52 4893 7 InfluenzaA M1 GILGFVFTL transitional T cells between effector and memory populations PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*02:01 B2M MHCI -5312 chip0420_27639 7.67 13.24 Chip1 healthy_1 healthy _ 6746 2491 M1 FLU 0.89 1250 M1 43 2448 7 InfluenzaA M1 GILGFVFTL transitional T cells between effector and memory populations PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*02:01 B2M MHCI -5313 chip0420_270210 6.77 13.41 Chip1 healthy_1 healthy TGTGCTGGAGGCGGAAGCCAAGGAAATCTCATCTTT CAGGGSQGNLIF TRAV27*01 TRAJ42*01 13.0 734.0 CAGGGSQGNLIF_ 4 3091 M1 FLU 0.85 1250 M1 50 3041 7 InfluenzaA M1 GILGFVFTL transitional T cells between effector and memory populations PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*02:01 B2M MHCI -5314 chip0420_173253 6.7 13.59 Chip1 T1D_1 T1D _ 6746 4436 M1 FLU 0.66 1250 M1 52 4384 7 InfluenzaA M1 GILGFVFTL transitional T cells between effector and memory populations PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*02:01 B2M MHCI -5315 chip0420_839625 -1.35 10.48 Chip1 T1D_1 T1D _ 6746 4213 PGT-178 PGT 0.93 1480 PGT-178 51 4162 3 HomoSapiens PGT LLAGIGTVPI Naive T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*02:01 B2M MHCI -5316 chip0420_844958 10.97 10.85 Chip1 T1D_1 T1D TGTGCCAGCAGTTCGGGACAGGTACTTCCCAATGAGCAGTTCTTC CASSSGQVLPNEQFF TRBV2*01 TRBJ2-1*01 31.0 1538.0 _CASSSGQVLPNEQFF 61 3389 EBV-BLMF1 EBV 0.5 2531 NEG 51 3338 9 EBV BLMF1 GLCTLVAML effector memory T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*02:01 B2M MHCI -5317 chip0420_668470 10.63 10.45 Chip1 T1D_2 T1D _ 6746 3530 EBV-BLMF1 EBV 0.75 2531 NEG 47 3483 9 EBV BLMF1 GLCTLVAML effector memory T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*02:01 B2M MHCI -5318 chip0420_725183 -0.44 9.32 Chip1 T1D_1 T1D TGTGCCAGCAGTAACCCCCCGGTGGGGAATTCACCCCTCCACTTT CASSNPPVGNSPLHF TRBV6-2*01,TRBV6-3*01 TRBJ1-6*01 5.0 77.0 _CASSNPPVGNSPLHF 1 3348 PGT-178 PGT 0.54 1480 PGT-178 63 3285 4 HomoSapiens PGT LLAGIGTVPI Naive T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*02:01 B2M MHCI -5319 chip0420_507649 10.43 13.82 Chip1 healthy_1 healthy TGTGCCGTGAAGGACACCGACAAGCTCATCTTT CAVKDTDKLIF TRAV8-1*01 TRAJ34*01 1.0 38.0 TGTGCCAGTAGTACGCGGAGCTCCTACGAGCAGTACTTC CASSTRSSYEQYF TRBV19*01 TRBJ2-7*01 27.0 2026.0 CAVKDTDKLIF_CASSTRSSYEQYF 1 2140 M1 FLU 0.59 1250 M1 49 2091 11 InfluenzaA M1 GILGFVFTL effector T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*02:01 B2M MHCI -5320 chip0420_707898 5.06 10.38 Chip1 T1D_2 T1D _ 6746 4131 MART1-ALA MART1 0.75 269 NEG 41 4090 6 HomoSapiens MART1 ALAGIGILTV central memory T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*02:01 B2M MHCI -5321 chip0420_310557 6.34 12.75 Chip1 healthy_1 healthy _ 6746 4176 M1 FLU 0.85 1250 M1 49 4127 7 InfluenzaA M1 GILGFVFTL transitional T cells between effector and memory populations PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*02:01 B2M MHCI -5322 chip0420_676455 6.7 11.93 Chip1 healthy_1 healthy _ 6746 4605 HCV-K1Y HCV 0.97 15 HCV-K1Y 37 4568 7 HCV POL YLVALGINAV transitional T cells between effector and memory populations PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*02:01 B2M MHCI -5323 chip0420_581495 11.38 9.34 Chip1 T1D_1 T1D TGCAGCGTCGGCTCCAGGGGAACTAATGAAAAACTGTTTTTT CSVGSRGTNEKLFF TRBV29-1*01 TRBJ1-4*01 27.0 1478.0 _CSVGSRGTNEKLFF 283 2521 EBV-BLMF1 EBV 0.6 2531 NEG 39 2482 10 EBV BLMF1 GLCTLVAML effector memory T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*02:01 B2M MHCI -5324 chip0420_523183 6.98 11.96 Chip1 healthy_1 healthy TGTGCTTTCATGGTTAATGCTGGTGGTACTAGCTATGGAAAGCTGACATTT CAFMVNAGGTSYGKLTF TRAV38-1*01 TRAJ52*01 65.0 2045.0 CAFMVNAGGTSYGKLTF_ 2 4614 M1 FLU 0.88 1250 M1 50 4564 7 InfluenzaA M1 GILGFVFTL transitional T cells between effector and memory populations PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*02:01 B2M MHCI -5325 chip0420_547824 12.05 7.41 Chip1 T1D_1 T1D TGTGCCAGCAGTTCGGGACAGGTACTTCCCAATGAGCAGTTCTTC CASSSGQVLPNEQFF TRBV2*01 TRBJ2-1*01 3.0 211.0 _CASSSGQVLPNEQFF 61 3224 EBV-BLMF1 EBV 0.5 2531 NEG 50 3174 10 EBV BLMF1 GLCTLVAML effector memory T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*02:01 B2M MHCI -5326 chip0420_356331 11.57 6.45 Chip1 T1D_2 T1D TGTGTGGTGAACGGCAGGGATAGCAGCTATAAATTGATCTTC CVVNGRDSSYKLIF TRAV12-1*01 TRAJ12*01 38.0 2025.0 TGTGCCAGCAGCTCGGGACTAGTCGCCCCCGGGGAGCTGTTTTTT CASSSGLVAPGELFF TRBV2*01 TRBJ2-2*01 16.0 997.0 CVVNGRDSSYKLIF_CASSSGLVAPGELFF 98 3814 EBV-BLMF1 EBV 1.0 2531 NEG 54 3760 10 EBV BLMF1 GLCTLVAML effector memory T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*02:01 B2M MHCI -5327 chip0420_487244 -4.24 11.22 Chip1 healthy_1 healthy TGTGCCAGCAGTCAGACTAGCGGGGTGGGCGAGCAGTACTTC CASSQTSGVGEQYF TRBV28*01 TRBJ2-7*01 17.0 906.0 _CASSQTSGVGEQYF 1 3458 PGT-178 PGT 0.5 1480 NEG 51 3407 1 HomoSapiens PGT LLAGIGTVPI Naive T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*02:01 B2M MHCI -5328 chip0420_288762 6.55 12.21 Chip1 healthy_1 healthy _ 6746 4211 M1 FLU 0.67 1250 M1 44 4167 7 InfluenzaA M1 GILGFVFTL transitional T cells between effector and memory populations PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*02:01 B2M MHCI -5329 chip0420_860577 13.52 9.36 Chip1 T1D_3 T1D _ 6746 3330 BZLF1-190-197 EBV 0.48 2156 NEG 40 3290 12 EBV BZLF1 RAKFKQLL effector T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-B*08:01 B2M MHCI -5330 chip0420_377689 11.61 8.91 Chip1 T1D_2 T1D _ 6746 2586 EBV-BLMF1 EBV 0.75 2531 NEG 59 2527 10 EBV BLMF1 GLCTLVAML effector memory T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*02:01 B2M MHCI -5331 chip0420_21775 -0.33 4.34 Chip1 healthy_2 healthy _ 6746 3111 ZNT8-281-290 ZNT8 0.76 6 ZNT8-281-290 58 3053 5 HomoSapiens ZNT8 SLNYSGVKEL natural killer-like T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*02:01 B2M MHCI -5332 chip0420_250451 -2.99 13.02 Chip1 T1D_1 T1D _ 6746 3451 PGT-178 PGT 0.7 1480 PGT-178 55 3396 1 HomoSapiens PGT LLAGIGTVPI Naive T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*02:01 B2M MHCI -5333 chip0420_842782 7.94 13.83 Chip1 healthy_2 healthy _ 6746 2579 M1 FLU 0.57 1250 NEG 41 2538 7 InfluenzaA M1 GILGFVFTL transitional T cells between effector and memory populations PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*02:01 B2M MHCI -5334 chip0420_807251 7.66 13.42 Chip1 T1D_1 T1D _ 6746 3150 M1 FLU 0.75 1250 NEG 51 3099 7 InfluenzaA M1 GILGFVFTL transitional T cells between effector and memory populations PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*02:01 B2M MHCI -5335 chip0420_642305 8.67 13.84 Chip1 T1D_3 T1D CGTGCCGGCCGTTTGGTCCGCGACCCATTAGGGGAGCAGTACTTC RAGRLVRDPLGEQYF TRBV28*01 TRBJ2-7*01 2.0 179.0 _RAGRLVRDPLGEQYF 1 1981 BZLF1-190-197 EBV 1.0 2156 BZLF1-190-197 55 1926 11 EBV BZLF1 RAKFKQLL effector T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-B*08:01 B2M MHCI -5336 chip0420_488656 5.35 9.31 Chip1 T1D_1 T1D _ 6746 4815 EBV-LMP2-FLY EBV 0.84 355 EBV-LMP2-FLY 41 4774 6 EBV LMP2 FLYALALLL central memory T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*02:01 B2M MHCI -5337 chip0420_479058 -2.82 12.85 Chip1 T1D_1 T1D _ 6746 3025 MART1-ALA MART1 0.53 269 MART1-ALA 60 2965 1 HomoSapiens MART1 ALAGIGILTV Naive T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*02:01 B2M MHCI -5338 chip0420_425315 -2.67 14.3 Chip1 T1D_1 T1D _ 6746 2686 MART1-A28L MART1 0.92 84 MART1-A28L 66 2620 1 HomoSapiens MART1 ALGIGILTV Naive T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*02:01 B2M MHCI -5339 chip0420_325576 11.88 13.21 Chip1 T1D_1 T1D _ 6746 1994 EBV-BRLF1 EBV 0.81 1264 NEG 54 1940 11 EBV BRLF1 YVLDHLIVV effector T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*02:01 B2M MHCI -5340 chip0420_775559 11.46 10.36 Chip1 T1D_1 T1D TGTGTGGTGAACGGACGGGATAGCAGCTATAAATTGATCCTC CVVNGRDSSYKLIL TRAV12-1*01 TRAJ12*01 14.0 865.0 TGTGCCAGCAGTGACGGTCGGGTCCACCCGGGGACCCAGTACTTC CASSDGRVHPGTQYF TRBV2*01 TRBJ2-5*01 35.0 1991.0 CVVNGRDSSYKLIL_CASSDGRVHPGTQYF 1 3218 EBV-BLMF1 EBV 0.8 2531 NEG 44 3174 9 EBV BLMF1 GLCTLVAML effector memory T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*02:01 B2M MHCI -5341 chip0420_500442 -1.86 10.2 Chip1 T1D_2 T1D TGTGCCAGCGAGGGGCAGAACACTGAAGCTTTCTTT CASEGQNTEAFF TRBV7-2*01 TRBJ1-1*01 27.0 1284.0 _CASEGQNTEAFF 1 4424 PGT-178 PGT 0.73 1480 PGT-178 53 4371 3 HomoSapiens PGT LLAGIGTVPI Naive T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*02:01 B2M MHCI -5342 chip0420_69421 9.22 13.86 Chip1 T1D_1 T1D _ 6746 1947 M1 FLU 0.8 1250 NEG 45 1902 11 InfluenzaA M1 GILGFVFTL effector T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*02:01 B2M MHCI -5343 chip0420_595204 11.42 10.96 Chip1 T1D_1 T1D _ 6746 2412 EBV-BLMF1 EBV 0.92 2531 NEG 40 2372 9 EBV BLMF1 GLCTLVAML effector memory T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*02:01 B2M MHCI -5344 chip0420_481019 11.64 13.45 Chip1 T1D_3 T1D _ 6746 1612 BZLF1-190-197 EBV 1.0 2156 NEG 48 1564 11 EBV BZLF1 RAKFKQLL effector T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-B*08:01 B2M MHCI -5345 chip0420_798255 12.4 13.15 Chip1 T1D_1 T1D _ 6746 1451 EBV-BLMF1 EBV 0.89 2531 NEG 49 1402 11 EBV BLMF1 GLCTLVAML effector T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*02:01 B2M MHCI -5346 chip0420_402603 5.35 10.32 Chip1 T1D_1 T1D _ 6746 4271 EBV-LMP2-FLY EBV 0.75 355 EBV-LMP2-FLY 58 4213 6 EBV LMP2 FLYALALLL central memory T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*02:01 B2M MHCI -5347 chip0420_614549 8.75 12.25 Chip1 healthy_1 healthy _ 6746 2772 M1 FLU 0.7 1250 NEG 61 2711 7 InfluenzaA M1 GILGFVFTL transitional T cells between effector and memory populations PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*02:01 B2M MHCI -5348 chip0420_442043 12.08 6.56 Chip1 T1D_2 T1D _ 6746 3937 EBV-BLMF1 EBV 0.75 2531 NEG 57 3880 10 EBV BLMF1 GLCTLVAML effector memory T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*02:01 B2M MHCI -5349 chip0420_824486 8.76 13.72 Chip1 T1D_1 T1D _ 6746 2829 M1 FLU 0.88 1250 M1 57 2772 11 InfluenzaA M1 GILGFVFTL effector T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*02:01 B2M MHCI -5350 chip0420_341931 6.47 13.06 Chip1 healthy_1 healthy _ 6746 4280 M1 FLU 0.93 1250 NEG 49 4231 7 InfluenzaA M1 GILGFVFTL transitional T cells between effector and memory populations PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*02:01 B2M MHCI -5351 chip0420_580196 -4.6 9.26 Chip1 healthy_1 healthy _ 6746 3883 PGT-178 PGT 0.54 1480 PGT-178 42 3841 2 HomoSapiens PGT LLAGIGTVPI Naive T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*02:01 B2M MHCI -5352 chip0420_404837 9.01 13.76 Chip1 healthy_2 healthy TGTGCCAGCAGTGCGCGGGGCGGGAGGACCTACGAGCAGTACTTC CASSARGGRTYEQYF TRBV12-3*01,TRBV12-4*01 TRBJ2-7*01 18.0 946.0 _CASSARGGRTYEQYF 1 1563 PGT-178 PGT 0.86 1480 NEG 48 1515 11 HomoSapiens PGT LLAGIGTVPI effector T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*02:01 B2M MHCI -5353 chip0420_289965 -3.78 12.21 Chip1 T1D_1 T1D TGTGCTCTGAGTGAGGATTCAGGATACAGCACCCTCACCTTT CALSEDSGYSTLTF TRAV19*01 TRAJ11*01 39.0 2069.0 CALSEDSGYSTLTF_ 1 3842 POL-132-140 HIV 0.86 37 NEG 44 3798 1 HIV-1 POL LVGPTPVNI Naive T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*02:01 B2M MHCI -5354 chip0420_357700 7.26 13.39 Chip1 healthy_1 healthy _ 6746 2705 M1 FLU 0.85 1250 M1 43 2662 7 InfluenzaA M1 GILGFVFTL transitional T cells between effector and memory populations PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*02:01 B2M MHCI -5355 chip0420_745321 7.32 13.55 Chip1 T1D_1 T1D _ 6746 3441 M1 FLU 0.78 1250 M1 56 3385 7 InfluenzaA M1 GILGFVFTL transitional T cells between effector and memory populations PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*02:01 B2M MHCI -5356 chip0420_545505 -2.29 15.65 Chip1 T1D_1 T1D _ 6746 1426 MART1-A27L MART1 0.52 16 NEG 45 1381 1 HomoSapiens MART1 ELAGIGILTV Naive T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*02:01 B2M MHCI -5357 chip0420_630113 10.83 12.16 Chip1 T1D_2 T1D TGCGCCAGCAGGATGGGGGCCGGGGATACGCAGTATTTT CASRMGAGDTQYF TRBV10-2*01 TRBJ2-3*01 10.0 509.0 _CASRMGAGDTQYF 90 2334 EBV-BLMF1 EBV 0.83 2531 NEG 56 2278 11 EBV BLMF1 GLCTLVAML effector T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*02:01 B2M MHCI -5358 chip0420_79589 5.94 13.23 Chip1 T1D_1 T1D _ 6746 4373 M1 FLU 1.0 1250 M1 37 4336 7 InfluenzaA M1 GILGFVFTL transitional T cells between effector and memory populations PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*02:01 B2M MHCI -5359 chip0420_849035 8.33 13.85 Chip1 healthy_1 healthy TGTGCCAGTAGTATAAGAAGTTCCTACGAGCAGTACTTC CASSIRSSYEQYF TRBV19*01 TRBJ2-7*01 24.0 1812.0 _CASSIRSSYEQYF 36 2164 M1 FLU 0.73 1250 M1 46 2118 11 InfluenzaA M1 GILGFVFTL effector T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*02:01 B2M MHCI -5360 chip0420_666060 -4.22 9.26 Chip1 healthy_1 healthy TGCAGTGCTAGAGTAGGCAGGGTCGGCGGTGAAGCTTTCTTT CSARVGRVGGEAFF TRBV20-1*01 TRBJ1-1*01 17.0 984.0 _CSARVGRVGGEAFF 1 5460 PGT-178 PGT 0.97 1480 PGT-178 56 5404 2 HomoSapiens PGT LLAGIGTVPI Naive T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*02:01 B2M MHCI -5361 chip0420_279645 -2.57 13.79 Chip1 T1D_1 T1D TGTGCCAGCCATCAATTCAGGACAGTTATCCCCGACACTGAAGCTTTCTTT CASHQFRTVIPDTEAFF TRBV6-1*01 TRBJ1-1*01 28.0 1097.0 _CASHQFRTVIPDTEAFF 1 2746 PGT-178 PGT 0.72 1480 PGT-178 44 2702 1 HomoSapiens PGT LLAGIGTVPI Naive T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*02:01 B2M MHCI -5362 chip0420_483709 -4.31 8.36 Chip1 healthy_1 healthy TGCAGCGTTGAACCGACTATCTACACAGATACGCAGTATTTT CSVEPTIYTDTQYF TRBV29-1*01 TRBJ2-3*01 134.0 7519.0 _CSVEPTIYTDTQYF 1 5004 EBV-LMP1-1 EBV 0.5 237 NEG 38 4966 2 EBV LMP1 YLLEMLWRL Naive T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*02:01 B2M MHCI -5363 chip0420_881388 11.47 10.78 Chip1 T1D_1 T1D _ 6746 2725 EBV-BRLF1 EBV 0.83 1264 EBV-BRLF1 52 2673 9 EBV BRLF1 YVLDHLIVV effector memory T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*02:01 B2M MHCI -5364 chip0420_682960 -3.45 13.0 Chip1 T1D_1 T1D _ 6746 2348 PGT-178 PGT 0.88 1480 PGT-178 41 2307 1 HomoSapiens PGT LLAGIGTVPI Naive T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*02:01 B2M MHCI -5365 chip0420_827551 6.58 13.37 Chip1 T1D_1 T1D TGTGGCCCTCAACAGAATGACCGCCGGGGGAAATTGCAGGTT CGPQQNDRRGKLQV TRAV30*01 TRAJ24*01 5.0 403.0 CGPQQNDRRGKLQV_ 1 3356 M1 FLU 0.82 1250 M1 51 3305 7 InfluenzaA M1 GILGFVFTL transitional T cells between effector and memory populations PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*02:01 B2M MHCI -5366 chip0420_579599 7.11 13.01 Chip1 healthy_1 healthy _ 6746 3475 M1 FLU 0.95 1250 M1 45 3430 7 InfluenzaA M1 GILGFVFTL transitional T cells between effector and memory populations PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*02:01 B2M MHCI -5367 chip0420_446432 7.23 10.9 Chip1 healthy_1 healthy _ 6746 5061 M1 FLU 0.97 1250 M1 42 5019 7 InfluenzaA M1 GILGFVFTL transitional T cells between effector and memory populations PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*02:01 B2M MHCI -5368 chip0420_546066 -3.51 12.81 Chip1 T1D_1 T1D _ 6746 3015 PGT-178 PGT 0.63 1480 NEG 40 2975 1 HomoSapiens PGT LLAGIGTVPI Naive T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*02:01 B2M MHCI -5369 chip0420_158283 13.98 9.69 Chip1 T1D_1 T1D TGTGCCAGCAGCCATGAGATAGCCGACAGGGACCTAATCTACGAGCAGTACTTC CASSHEIADRDLIYEQYF TRBV3-1*01 TRBJ2-7*01 6.0 213.0 _CASSHEIADRDLIYEQYF 1 3550 EBV-BLMF1 EBV 0.95 2531 EBV-BLMF1 45 3505 12 EBV BLMF1 GLCTLVAML effector T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*02:01 B2M MHCI -5370 chip0420_580906 9.55 9.16 Chip1 T1D_1 T1D _ 6746 5947 EBV-BLMF1 EBV 0.46 2531 NEG 44 5903 8 EBV BLMF1 GLCTLVAML effector memory T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*02:01 B2M MHCI -5371 chip0420_663938 10.56 10.3 Chip1 T1D_1 T1D TGCATCCTGAGACGCTATGGAGGCAGCCAAGGAAATCTCATCTTT CILRRYGGSQGNLIF TRAV26-2*01 TRAJ42*01 29.0 1738.0 CILRRYGGSQGNLIF_ 9 3922 EBV-BLMF1 EBV 0.95 2531 EBV-BLMF1 56 3866 9 EBV BLMF1 GLCTLVAML effector memory T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*02:01 B2M MHCI -5372 chip0420_743677 -2.2 15.84 Chip1 T1D_1 T1D _ 6746 1398 PGT-178 PGT 0.67 1480 NEG 47 1351 1 HomoSapiens PGT LLAGIGTVPI Naive T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*02:01 B2M MHCI -5373 chip0420_488000 -2.3 8.32 Chip1 healthy_1 healthy TGTGCCCGCCGTGCCAGAGGGACAGTAAACGAGCAGTACTTC CARRARGTVNEQYF TRBV2*01 TRBJ2-7*01 2.0 166.0 _CARRARGTVNEQYF 1 5576 ZNT8-115-123 ZNT8 0.82 74 NEG 40 5536 3 HomoSapiens ZNT8 LLSLFSLWL Naive T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*02:01 B2M MHCI -5374 chip0420_212898 5.62 9.14 Chip1 T1D_1 T1D _ 6746 4059 EBV-LMP2-FLY EBV 0.77 355 NEG 41 4018 6 EBV LMP2 FLYALALLL central memory T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*02:01 B2M MHCI -5375 chip0420_265311 11.94 6.81 Chip1 T1D_2 T1D TGTGCCAGCAGCCTTCCGGGACAGCACACTGAAGCTTTCTTT CASSLPGQHTEAFF TRBV12-3*01,TRBV12-4*01 TRBJ1-1*01 3.0 42.0 _CASSLPGQHTEAFF 1 3209 EBV-BLMF1 EBV 1.0 2531 NEG 40 3169 10 EBV BLMF1 GLCTLVAML effector memory T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*02:01 B2M MHCI -5376 chip0420_575609 11.78 13.96 Chip1 T1D_3 T1D _ 6746 1115 BZLF1-190-197 EBV 0.5 2156 NEG 35 1080 11 EBV BZLF1 RAKFKQLL effector T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-B*08:01 B2M MHCI -5377 chip0420_717086 -3.33 13.6 Chip1 healthy_1 healthy TGCAGTGCCAGAGGGGGAGACGGGTACGAGCAGTACTTC CSARGGDGYEQYF TRBV20-1*01 TRBJ2-7*01 24.0 1485.0 _CSARGGDGYEQYF 1 2821 GP160-311-320 HIV 0.81 109 GP160-311-320 39 2782 1 HIV-1 GP160 RGPGRAFVTI Naive T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*02:01 B2M MHCI -5378 chip0420_289235 12.01 13.9 Chip1 T1D_2 T1D _ 6746 1013 EBV-BLMF1 EBV 0.5 2531 NEG 41 972 11 EBV BLMF1 GLCTLVAML effector T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*02:01 B2M MHCI -5379 chip0420_707400 -1.94 8.49 Chip1 healthy_2 healthy _ 6746 6005 MART1-ALA MART1 0.58 269 MART1-ALA 35 5970 3 HomoSapiens MART1 ALAGIGILTV Naive T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*02:01 B2M MHCI -5380 chip0420_495884 12.29 12.86 Chip1 T1D_1 T1D _ 6746 1735 EBV-BLMF1 EBV 0.44 2531 NEG 44 1691 11 EBV BLMF1 GLCTLVAML effector T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*02:01 B2M MHCI -5381 chip0420_552956 -2.92 14.44 Chip1 T1D_1 T1D _ 6746 2616 PGT-178 PGT 0.87 1480 PGT-178 42 2574 1 HomoSapiens PGT LLAGIGTVPI Naive T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*02:01 B2M MHCI -5382 chip0420_504491 -3.75 10.52 Chip1 T1D_1 T1D TGTGCCAGCAGTTACAGCGAGACAGGGCAAGCTTTCTTT CASSYSETGQAFF TRBV6-5*01 TRBJ1-1*01 3.0 107.0 _CASSYSETGQAFF 1 4097 MART1-ALA MART1 0.65 269 NEG 33 4064 2 HomoSapiens MART1 ALAGIGILTV Naive T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*02:01 B2M MHCI -5383 chip0420_404246 5.71 8.86 Chip1 T1D_1 T1D TGCATCCTACCACTGGAGGGCTTCAAAACTATCTT CILPLga?GLQNYL TRAV26-2*01 TRAJ9*01 1.0 217.0 CILPLga?GLQNYL_ 1 3449 EBV-LMP1-1 EBV 0.95 237 EBV-LMP1-1 38 3411 6 EBV LMP1 YLLEMLWRL central memory T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*02:01 B2M MHCI -5384 chip0420_63418 11.9 13.8 Chip1 T1D_1 T1D TGTGCCAGCAGTCCGGACCAAACTAGCTCCTACAATGAGCAGTTCTTC CASSPDQTSSYNEQFF TRBV27*01 TRBJ2-1*01 8.0 422.0 _CASSPDQTSSYNEQFF 47 1010 EBV-BRLF1 EBV 0.73 1264 NEG 36 974 11 EBV BRLF1 YVLDHLIVV effector T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*02:01 B2M MHCI -5385 chip0420_608375 11.24 11.1 Chip1 T1D_2 T1D _ 6746 2430 EBV-BRLF1 EBV 0.89 1264 NEG 40 2390 9 EBV BRLF1 YVLDHLIVV effector memory T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*02:01 B2M MHCI -5386 chip0420_491119 7.33 13.93 Chip1 T1D_1 T1D _ 6746 2870 M1 FLU 0.4 1250 M1 36 2834 7 InfluenzaA M1 GILGFVFTL transitional T cells between effector and memory populations PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*02:01 B2M MHCI -5387 chip0420_573543 7.03 13.67 Chip1 healthy_1 healthy _ 6746 2863 M1 FLU 0.85 1250 NEG 39 2824 7 InfluenzaA M1 GILGFVFTL transitional T cells between effector and memory populations PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*02:01 B2M MHCI -5388 chip0420_67314 11.33 10.26 Chip1 T1D_1 T1D _ 6746 2955 EBV-BLMF1 EBV 0.5 2531 NEG 42 2913 9 EBV BLMF1 GLCTLVAML effector memory T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*02:01 B2M MHCI -5389 chip0420_580073 -3.89 9.32 Chip1 T1D_1 T1D _ 6746 4207 PGT-178 PGT 0.62 1480 PGT-178 43 4164 2 HomoSapiens PGT LLAGIGTVPI Naive T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*02:01 B2M MHCI -5390 chip0420_510230 10.96 13.64 Chip1 healthy_1 healthy TGTGCCAGTAGTACCAGATCCTCCTACGAGCAGTACTTC CASSTRSSYEQYF TRBV19*01 TRBJ2-7*01 3.0 63.0 _CASSTRSSYEQYF 7 1577 M1 FLU 1.0 1250 NEG 43 1534 11 InfluenzaA M1 GILGFVFTL effector T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*02:01 B2M MHCI -5391 chip0420_542421 11.14 8.86 Chip1 healthy_2 healthy _ 6746 3400 BZLF1-190-197 EBV 0.41 2156 NEG 33 3367 10 EBV BZLF1 RAKFKQLL effector memory T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-B*08:01 B2M MHCI -5392 chip0420_522060 11.04 11.85 Chip1 T1D_2 T1D _ 6746 2192 EBV-BLMF1 EBV 0.75 2531 NEG 36 2156 9 EBV BLMF1 GLCTLVAML effector memory T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*02:01 B2M MHCI -5393 chip0420_631597 9.72 8.42 Chip1 T1D_2 T1D _ 6746 3268 EBV-BLMF1 EBV 0.5 2531 NEG 38 3230 8 EBV BLMF1 GLCTLVAML effector memory T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*02:01 B2M MHCI -5394 chip0420_387923 11.65 7.91 Chip1 T1D_2 T1D _ 6746 3058 EBV-BLMF1 EBV 0.88 2531 NEG 31 3027 10 EBV BLMF1 GLCTLVAML effector memory T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*02:01 B2M MHCI -5395 chip0420_606041 9.47 13.93 Chip1 T1D_1 T1D _ 6746 1495 M1 FLU 0.7 1250 NEG 33 1462 11 InfluenzaA M1 GILGFVFTL effector T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*02:01 B2M MHCI -5396 chip0420_475997 7.93 13.81 Chip1 T1D_1 T1D _ 6746 2431 M1 FLU 0.85 1250 NEG 47 2384 7 InfluenzaA M1 GILGFVFTL transitional T cells between effector and memory populations PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*02:01 B2M MHCI -5397 chip0420_202685 6.17 12.62 Chip1 healthy_1 healthy TGTGCCCGTCGTATCCGCCGTTCCTACGAGCAGTACCTC CARRIRRSYEQYL TRBV19*01 TRBJ2-7*01 6.0 57.0 _CARRIRRSYEQYL 1 3623 M1 FLU 1.0 1250 NEG 38 3585 7 InfluenzaA M1 GILGFVFTL transitional T cells between effector and memory populations PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*02:01 B2M MHCI -5398 chip0420_113534 -2.94 14.55 Chip1 T1D_1 T1D _ 6746 2983 PGT-178 PGT 0.47 1480 PGT-178 44 2939 1 HomoSapiens PGT LLAGIGTVPI Naive T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*02:01 B2M MHCI -5399 chip0420_173849 7.86 13.87 Chip1 T1D_1 T1D _ 6746 2519 M1 FLU 1.0 1250 NEG 35 2484 7 InfluenzaA M1 GILGFVFTL transitional T cells between effector and memory populations PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*02:01 B2M MHCI -5400 chip0420_267620 11.38 12.2 Chip1 T1D_1 T1D _ 6746 2472 EBV-BLMF1 EBV 0.96 2531 EBV-BLMF1 34 2438 9 EBV BLMF1 GLCTLVAML effector memory T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*02:01 B2M MHCI -5401 chip0420_689727 -2.08 8.54 Chip1 healthy_2 healthy _ 6746 4508 ZNT8-VTD-9 ZNT8 0.79 65 ZNT8-VTD-9 36 4472 3 HomoSapiens ZNT8 VTDAAHLLI Naive T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*01:01 B2M MHCI -5402 chip0420_417010 10.99 7.37 Chip1 T1D_2 T1D _ 6746 3638 EBV-BLMF1 EBV 0.47 2531 NEG 31 3607 10 EBV BLMF1 GLCTLVAML effector memory T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*02:01 B2M MHCI -5403 chip0420_714816 0.17 3.71 Chip1 T1D_1 T1D _ 6746 3908 HCV-K1Y HCV 0.44 15 NEG 29 3879 5 HCV POL YLVALGINAV natural killer-like T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*02:01 B2M MHCI -5404 chip0420_403926 -3.98 13.15 Chip1 T1D_1 T1D _ 6746 2463 GAG-433-442 HIV 0.89 19 NEG 31 2432 1 HIV-1 GAG FLGKIWPSYK Naive T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*02:01 B2M MHCI -5405 chip0420_662564 7.39 13.24 Chip1 T1D_1 T1D _ 6746 2505 M1 FLU 1.0 1250 NEG 28 2477 7 InfluenzaA M1 GILGFVFTL transitional T cells between effector and memory populations PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*02:01 B2M MHCI -5406 chip0420_454300 -1.81 11.2 Chip1 T1D_1 T1D _ 6746 3512 PGT-178 PGT 0.86 1480 PGT-178 28 3484 3 HomoSapiens PGT LLAGIGTVPI Naive T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*02:01 B2M MHCI -5407 chip0420_578257 11.81 13.76 Chip1 T1D_1 T1D TGTGCCAGTAGAGGGCTGTTAGGGAAGCGAGAAAAACTGTTTTTT CASRGLLGKREKLFF TRBV19*01 TRBJ1-4*01 5.0 84.0 _CASRGLLGKREKLFF 1 1435 EBV-BRLF1 EBV 0.83 1264 NEG 31 1404 11 EBV BRLF1 YVLDHLIVV effector T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*02:01 B2M MHCI -5408 chip0420_71671 11.79 14.02 Chip1 T1D_1 T1D _ 6746 727 EBV-BLMF1 EBV 0.5 2531 NEG 32 695 11 EBV BLMF1 GLCTLVAML effector T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*02:01 B2M MHCI -5409 chip0420_806117 5.16 10.8 Chip1 T1D_2 T1D TGCAGCGTGGGGACAGGGGGAACTAATGAAAAACTGTTTTTT CSVGTGGTNEKLFF TRBV29-1*01 TRBJ1-4*01 11.0 266.0 _CSVGTGGTNEKLFF 638 3189 EBV-BLMF1 EBV 0.93 2531 NEG 28 3161 6 EBV BLMF1 GLCTLVAML central memory T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*02:01 B2M MHCI -5410 chip0420_827901 6.55 12.71 Chip1 T1D_1 T1D _ 6746 3752 M1 FLU 0.41 1250 M1 36 3716 7 InfluenzaA M1 GILGFVFTL transitional T cells between effector and memory populations PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*02:01 B2M MHCI -5411 chip0420_671393 -2.41 12.84 Chip1 T1D_1 T1D CTGTGCCAGCAGCATAGGACAAGAGACCCAGTACTTC LCQQHR??aQETQYF TRBV14*01 TRBJ2-5*01 1.0 19.0 _LCQQHR??aQETQYF 1 2976 PGT-178 PGT 0.85 1480 PGT-178 27 2949 1 HomoSapiens PGT LLAGIGTVPI Naive T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*02:01 B2M MHCI -5412 chip0420_253856 -3.98 8.77 Chip1 healthy_2 healthy _ 6746 3972 PREINS-2-10 INS 0.59 37 NEG 28 3944 2 HomoSapiens PREINS ALWMRLLPL Naive T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*02:01 B2M MHCI -5413 chip0420_186433 15.59 10.01 Chip1 T1D_2 T1D _ 6746 2632 EBV-BLMF1 EBV 1.0 2531 NEG 26 2606 12 EBV BLMF1 GLCTLVAML effector T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*02:01 B2M MHCI -5414 chip0420_789547 11.08 7.42 Chip1 T1D_2 T1D _ 6746 3728 EBV-BLMF1 EBV 0.58 2531 NEG 30 3698 10 EBV BLMF1 GLCTLVAML effector memory T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*02:01 B2M MHCI -5415 chip0420_606573 10.62 9.38 Chip1 T1D_1 T1D _ 6746 3451 EBV-BLMF1 EBV 0.94 2531 EBV-BLMF1 33 3418 9 EBV BLMF1 GLCTLVAML effector memory T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*02:01 B2M MHCI -5416 chip0420_275899 -1.42 7.95 Chip1 T1D_1 T1D _ 6746 5041 EBV-LMP2A EBV 0.76 700 EBV-LMP2A 30 5011 4 EBV LMP2A CLGGLLTMV Naive T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*02:01 B2M MHCI -5417 chip0420_58140 4.79 10.22 Chip1 T1D_1 T1D _ 6746 2226 EBV-LMP1-1 EBV 0.75 237 NEG 31 2195 6 EBV LMP1 YLLEMLWRL central memory T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*02:01 B2M MHCI -5418 chip0420_10799 10.01 10.79 Chip1 T1D_2 T1D _ 6746 3197 EBV-BLMF1 EBV 0.9 2531 NEG 22 3175 9 EBV BLMF1 GLCTLVAML effector memory T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*02:01 B2M MHCI -5419 chip0420_51281 10.69 7.69 Chip1 T1D_2 T1D _ 6746 3336 EBV-BRLF1 EBV 0.79 1264 EBV-BRLF1 40 3296 10 EBV BRLF1 YVLDHLIVV effector memory T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*02:01 B2M MHCI -5420 chip0420_29309 10.96 14.06 Chip1 T1D_2 T1D TGTGCCTGGCGTGTACAGCTAGCGGGAGTAGACGAGCAGTACTTC CAWRVQLAGVDEQYF TRBV30*01 TRBJ2-7*01 30.0 1405.0 _CAWRVQLAGVDEQYF 1 1085 EBV-BRLF1 EBV 0.9 1264 NEG 36 1049 11 EBV BRLF1 YVLDHLIVV effector T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*02:01 B2M MHCI -5421 chip0420_259676 9.68 13.26 Chip1 T1D_1 T1D _ 6746 1306 EBV-LMP2-FLY EBV 0.78 355 NEG 23 1283 6 EBV LMP2 FLYALALLL central memory T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*02:01 B2M MHCI -5422 chip0420_761289 -3.62 12.99 Chip1 T1D_1 T1D _ 6746 3111 EBV-LMP1-2 EBV 0.8 41 NEG 26 3085 1 EBV LMP1 YLQQNWWTL Naive T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*02:01 B2M MHCI -5423 chip0420_87989 10.71 7.0 Chip1 T1D_2 T1D _ 6746 3572 EBV-BLMF1 EBV 0.55 2531 NEG 28 3544 10 EBV BLMF1 GLCTLVAML effector memory T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*02:01 B2M MHCI -5424 chip0420_756270 7.08 12.64 Chip1 healthy_2 healthy _ 6746 3363 ZNT8-293-300 ZNT8 0.56 17 NEG 20 3343 7 HomoSapiens ZNT8 LAVDGVLSV transitional T cells between effector and memory populations PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*02:01 B2M MHCI -5425 chip0420_724962 12.03 6.11 Chip1 T1D_2 T1D _ 6746 6352 EBV-LMP2-FLY EBV 0.8 355 NEG 29 6323 6 EBV LMP2 FLYALALLL central memory T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*02:01 B2M MHCI -5426 chip0420_288810 -4.63 9.81 Chip1 healthy_1 healthy _ 6746 4215 IAPP-5-13 IAPP 0.46 30 IAPP-5-13 22 4193 2 HomoSapiens IAPP KLQVFLIVL Naive T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*02:01 B2M MHCI -5427 chip0420_148188 4.86 10.91 Chip1 healthy_2 healthy _ 6746 3185 MART1-A28L MART1 0.68 84 MART1-A28L 27 3158 6 HomoSapiens MART1 ALGIGILTV central memory T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*02:01 B2M MHCI -5428 chip0420_633436 -4.11 10.31 Chip1 T1D_1 T1D _ 6746 4137 PGT-178 PGT 0.75 1480 PGT-178 24 4113 2 HomoSapiens PGT LLAGIGTVPI Naive T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*02:01 B2M MHCI -5429 chip0420_116344 -2.17 13.38 Chip1 T1D_1 T1D _ 6746 3071 PGT-178 PGT 0.73 1480 PGT-178 34 3037 1 HomoSapiens PGT LLAGIGTVPI Naive T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*02:01 B2M MHCI -5430 chip0420_403535 -2.01 16.11 Chip1 T1D_1 T1D _ 6746 717 M1 FLU 0.75 1250 NEG 22 695 1 InfluenzaA M1 GILGFVFTL Naive T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*02:01 B2M MHCI -5431 chip0420_337307 11.04 8.93 Chip1 healthy_2 healthy _ 6746 3211 BZLF1-190-197 EBV 0.79 2156 BZLF1-190-197 23 3188 10 EBV BZLF1 RAKFKQLL effector memory T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-B*08:01 B2M MHCI -5432 chip0420_158316 5.59 8.7 Chip1 T1D_1 T1D _ 6746 4322 EBV-LMP2-FLY EBV 0.95 355 EBV-LMP2-FLY 21 4301 6 EBV LMP2 FLYALALLL central memory T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*02:01 B2M MHCI -5433 chip0420_154624 8.76 13.81 Chip1 T1D_1 T1D _ 6746 1740 M1 FLU 0.9 1250 NEG 24 1716 11 InfluenzaA M1 GILGFVFTL effector T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*02:01 B2M MHCI -5434 chip0420_19461 6.79 12.91 Chip1 T1D_1 T1D _ 6746 3373 M1 FLU 1.0 1250 M1 21 3352 7 InfluenzaA M1 GILGFVFTL transitional T cells between effector and memory populations PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*02:01 B2M MHCI -5435 chip0420_324376 13.73 13.04 Chip1 T1D_1 T1D _ 6746 1751 EBV-BLMF1 EBV 0.46 2531 NEG 23 1728 12 EBV BLMF1 GLCTLVAML effector T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*02:01 B2M MHCI -5436 chip0420_659369 -2.55 15.23 Chip1 T1D_3 T1D _ 6746 1479 PB1-591-599 FLU 0.6 2 NEG 23 1456 1 InfluenzaA PB1 VSDGGPNLY Naive T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*01:01 B2M MHCI -5437 chip0420_76402 11.19 7.29 Chip1 T1D_2 T1D _ 6746 3374 EBV-BLMF1 EBV 0.67 2531 NEG 23 3351 10 EBV BLMF1 GLCTLVAML effector memory T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*02:01 B2M MHCI -5438 chip0420_601669 5.75 8.93 Chip1 T1D_2 T1D _ 6746 5517 EBV-LMP2-FLY EBV 0.95 355 EBV-LMP2-FLY 26 5491 6 EBV LMP2 FLYALALLL central memory T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*02:01 B2M MHCI -5439 chip0420_453348 7.23 13.3 Chip1 T1D_1 T1D _ 6746 3121 M1 FLU 0.75 1250 M1 27 3094 7 InfluenzaA M1 GILGFVFTL transitional T cells between effector and memory populations PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*02:01 B2M MHCI -5440 chip0420_165697 11.4 12.7 Chip1 T1D_1 T1D _ 6746 1552 EBV-BLMF1 EBV 0.81 2531 NEG 24 1528 11 EBV BLMF1 GLCTLVAML effector T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*02:01 B2M MHCI -5441 chip0423_332436 13.21 6.39 Chip2 T1D_5 T1D TGTGCAGCAACGGAAACCTCCTACGACAAGGTGATATTT CAATETSYDKVIF TRAV13-1*01 TRAJ50*01 136.0 10049.0 TGTGCCAGCAGCCCTCTTGGGAGCAATGAAAAACTGTTTTTT CASSPLGSNEKLFF TRBV7-9*01 TRBJ1-4*01 73.0 2445.0 CAATETSYDKVIF_CASSPLGSNEKLFF 25 8108 BZLF1-190-197 EBV 0.5 2156 NEG 623 7485 10 EBV BZLF1 RAKFKQLL effector memory T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-B*08:01 B2M MHCI -5442 chip0423_749504 13.13 6.28 Chip2 T1D_6 T1D TGCATCCTCCCACTTGCTGGTGGTACTAGCTATGGAAAGCTGACATTT CILPLAGGTSYGKLTF TRAV26-2*01 TRAJ52*01 86.0 4631.0 TGTGCCAGCAGCTTGGGACAGGCCTACGAGCAGTACTTC CASSLGQAYEQYF TRBV7-8*01 TRBJ2-7*01 41.0 1650.0 CILPLAGGTSYGKLTF_CASSLGQAYEQYF 308 5679 EBNA3A-193-201 EBV 0.77 1022 NEG 674 5005 10 EBV EBNA3A FLRGRAYGL effector memory T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-B*08:01 B2M MHCI -5443 chip0423_36612 13.03 6.24 Chip2 T1D_4 T1D TGCATCGTCAGAGAGGGAGGAGGTGCTGACGGACTCACCTTT CIVREGGGADGLTF TRAV26-1*01 TRAJ45*01 77.0 4441.0 TGTGCCAGCAGCTTAGCGGTCGGAGAAGGGCCCCAGCATTTT CASSLAVGEGPQHF TRBV7-9*01 TRBJ1-5*01 99.0 3218.0 CIVREGGGADGLTF_CASSLAVGEGPQHF 68 10320 BZLF1-190-197 EBV 0.85 2156 BZLF1-190-197 651 9669 10 EBV BZLF1 RAKFKQLL effector memory T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-B*08:01 B2M MHCI -5444 chip0423_763431 12.26 6.05 Chip2 T1D_4 T1D TGTGCTACGGAGGGGGATTCAGGATACAGCACCCTCACCTTT CATEGDSGYSTLTF TRAV17*01 TRAJ11*01 71.0 2779.0 TGTGCAGAGAGAGACCCATCCGAGGTGCTACAAACAAGCTCATCTTT CAERDPSga?GATNKLIF TRAV13-2*01 TRAJ32*01 63.0 1893.0 0.39 TGTGCCAGCAGTCCGCAGGGAGGGAACTATGGCTACACCTTC CASSPQGGNYGYTF TRBV6-2*01,TRBV6-3*01,TRBV6-1*01 TRBJ1-2*01 12.0 507.0 CATEGDSGYSTLTF_CASSPQGGNYGYTF 1 9795 EBV-LMP2-FLY EBV 1.0 355 NEG 643 9152 6 EBV LMP2 FLYALALLL central memory T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*02:01 B2M MHCI -5445 chip0423_55094 13.15 6.3 Chip2 T1D_5 T1D TGTGCAGCAAGTGAAACCTCCTACGACAAGGTGATATTT CAASETSYDKVIF TRAV13-1*01 TRAJ50*01 30.0 3006.0 TGTGCCAGCAGCTTATTGGGACAGAAGGACACTGAAGCTTTCTTT CASSLLGQKDTEAFF TRBV7-9*01 TRBJ1-1*01 82.0 2142.0 CAASETSYDKVIF_CASSLLGQKDTEAFF 1 4684 BZLF1-190-197 EBV 0.83 2156 NEG 554 4130 10 EBV BZLF1 RAKFKQLL effector memory T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-B*08:01 B2M MHCI -5446 chip0423_255738 12.97 6.19 Chip2 T1D_4 T1D TGTGCTGTGCTCCAGGATAGCAACTATCAGTTAATCTGG CAVLQDSNYQLIW TRAV12-2*01 TRAJ33*01 192.0 7744.0 TGCGCCAGCAGTGATGACGGAATGAACACTGAAGCTTTCTTT CASSDDGMNTEAFF TRBV10-2*01 TRBJ1-1*01 70.0 1479.0 CAVLQDSNYQLIW_CASSDDGMNTEAFF 8 8528 EBV-LMP2A EBV 1.0 700 NEG 587 7941 10 EBV LMP2A CLGGLLTMV effector memory T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*02:01 B2M MHCI -5447 chip0423_793246 11.47 6.13 Chip2 T1D_4 T1D TGTGCTGTGGGAGATCTGGACGCCGGGATTATGGCAACAAACTGGTCTTT CAVGDLDAg?gDYGNKLVF TRAV1-2*01 TRAJ47*01 9.0 257.0 TGTGCCAGCAGTCCCCTCACAGATACGCAGTATTTT CASSPLTDTQYF TRBV27*01 TRBJ2-3*01 100.0 6999.0 CAVGDLDAg?gDYGNKLVF_CASSPLTDTQYF 1 8629 BZLF1-190-197 EBV 0.42 2156 NEG 534 8095 10 EBV BZLF1 RAKFKQLL effector memory T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-B*08:01 B2M MHCI -5448 chip0423_610024 13.55 6.62 Chip2 T1D_4 T1D TGTGCAGAGAGTGAAACTGGGGCAAACAACCTCTTCTTT CAESETGANNLFF TRAV5*01 TRAJ36*01 63.0 3822.0 TGTGCCGCCGCAGGGACAGCTAGCACAGATACGCAGTATTTT CAAAGTASTDTQYF TRBV10-3*01 TRBJ2-3*01 79.0 3179.0 CAESETGANNLFF_CAAAGTASTDTQYF 1 8414 BZLF1-190-197 EBV 0.7 2156 BZLF1-190-197 556 7858 10 EBV BZLF1 RAKFKQLL effector memory T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-B*08:01 B2M MHCI -5449 chip0423_164036 12.89 6.17 Chip2 T1D_4 T1D TGTGCTGTGAGAGACACGACGTGGGATGACAAGATCATCTTT CAVRDTTWDDKIIF TRAV3*01 TRAJ30*01 1.0 117.0 TGTGCCAGCAGCTTAGGAGGGGGAGAGGGGGCCAGTGAGCAGTTCTTC CASSLGGGEGASEQFF TRBV7-6*01 TRBJ2-1*01 23.0 1176.0 CAVRDTTWDDKIIF_CASSLGGGEGASEQFF 12 7035 EBNA3A-193-201 EBV 0.85 1022 NEG 589 6446 10 EBV EBNA3A FLRGRAYGL effector memory T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-B*08:01 B2M MHCI -5450 chip0423_729864 12.18 6.1 Chip2 T1D_5 T1D TGTGCTTATAGGAGCGACGACAGAGGAAAGCTTATCTTC CAYRSDDRGKLIF TRAV38-2/DV8*01 TRAJ23*01 18.0 918.0 TGTGCCAGCAGCCCTGGACAGGGGGACCACGAGCAGTACTTC CASSPGQGDHEQYF TRBV7-9*01 TRBJ2-7*01 55.0 3426.0 CAYRSDDRGKLIF_CASSPGQGDHEQYF 1 8208 BZLF1-190-197 EBV 0.85 2156 BZLF1-190-197 528 7680 10 EBV BZLF1 RAKFKQLL effector memory T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-B*08:01 B2M MHCI -5451 chip0423_326677 11.61 6.2 Chip2 T1D_4 T1D TACATCCTGCCATTGGAGGGTGGTACTAGCTATGGAAAGCTGACATTT YILPLEGGTSYGKLTF TRAV26-2*01 TRAJ52*01 62.0 2388.0 TGTGCCAGCAGCTCGGGACAAGCCTACGAGCAGTACTTC CASSSGQAYEQYF TRBV7-8*01 TRBJ2-7*01 39.0 2146.0 YILPLEGGTSYGKLTF_CASSSGQAYEQYF 1 10485 EBNA3A-193-201 EBV 0.73 1022 EBNA3A-193-201 521 9964 10 EBV EBNA3A FLRGRAYGL effector memory T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-B*08:01 B2M MHCI -5452 chip0423_87243 8.02 8.27 Chip2 T1D_6 T1D TGTGCTCTAATAAAAGCTGGCAACAACCGTAAGCTGATTTGG CALIKAGNNRKLIW TRAV16*01 TRAJ38*01 33.0 1863.0 TGCAGCGCCGGCAGGGACGGGACTAATGAAAAACTGTTTTTT CSAGRDGTNEKLFF TRBV29-1*01 TRBJ1-4*01 136.0 6306.0 CALIKAGNNRKLIW_CSAGRDGTNEKLFF 1 13848 MART1-ALA MART1 0.51 269 MART1-ALA 459 13389 8 HomoSapiens MART1 ALAGIGILTV effector memory T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*02:01 B2M MHCI -5453 chip0423_468432 12.27 6.08 Chip2 T1D_5 T1D TGTGTGGCGAAAGAAACCTCCTACGGCTGGGTGGTGTTT CVAKETSYGWVVF TRAV12-1*01 TRAJ50*01 10.0 593.0 TGTGCCAGCAGCGCCCTCGGGGGCCGCGGAGATACGCAGTATTTT CASSALGGRGDTQYF TRBV7-9*01 TRBJ2-3*01 114.0 5073.0 CVAKETSYGWVVF_CASSALGGRGDTQYF 1 6792 BZLF1-190-197 EBV 0.85 2156 BZLF1-190-197 529 6263 6 EBV BZLF1 RAKFKQLL central memory T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-B*08:01 B2M MHCI -5454 chip0423_113048 13.51 6.58 Chip2 T1D_5 T1D TGTGCAGCAATGGAAACCTCCTACGACAAGGTGATATTT CAAMETSYDKVIF TRAV13-1*01 TRAJ50*01 58.0 4739.0 CAAMETSYDKVIF_ 7 5067 BZLF1-190-197 EBV 0.43 2156 NEG 508 4559 10 EBV BZLF1 RAKFKQLL effector memory T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-B*08:01 B2M MHCI -5455 chip0423_723878 14.04 7.09 Chip2 T1D_5 T1D TGTGCAGCAACGGAAACCTCCTACGACAAGGTGATATTT CAATETSYDKVIF TRAV13-1*01 TRAJ50*01 8.0 544.0 CAATETSYDKVIF_ 13 6513 BZLF1-190-197 EBV 1.0 2156 NEG 486 6027 10 EBV BZLF1 RAKFKQLL effector memory T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-B*08:01 B2M MHCI -5456 chip0423_720012 13.43 6.6 Chip2 T1D_4 T1D TGTGCCCCTTCTCTGAATTCTGGGGGTTACCAGAAAGTTACCTTT CAPSLNSGGYQKVTF TRAV2*01 TRAJ13*01 10.0 151.0 TGTGCCAGCAGTGTAGTAGGGGGCGACTATGGCTACACCTTC CASSVVGGDYGYTF TRBV2*01 TRBJ1-2*01 78.0 3959.0 CAPSLNSGGYQKVTF_CASSVVGGDYGYTF 5 5536 EBNA3A-193-201 EBV 0.69 1022 NEG 477 5059 10 EBV EBNA3A FLRGRAYGL effector memory T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-B*08:01 B2M MHCI -5457 chip0423_15828 13.28 6.44 Chip2 T1D_4 T1D TGTGCTCTGAGCCAGCAGGGGGATTCAGGAGGAGGTGCTGCCGGCCTCACCTTT CALSQQGDSGGGAAGLTF TRAV9-2*01 TRAJ45*01 56.0 1583.0 TGTGCCAGCAGTTCAATGTTGGCCCACAAGACCTCCTATAATTCACCCCTCCACTTT CASSSMLAHKTSYNSPLHF TRBV28*01 TRBJ1-6*01 24.0 645.0 CALSQQGDSGGGAAGLTF_CASSSMLAHKTSYNSPLHF 1 6225 BZLF1-190-197 EBV 0.91 2156 NEG 548 5677 10 EBV BZLF1 RAKFKQLL effector memory T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-B*08:01 B2M MHCI -5458 chip0423_883674 12.49 6.18 Chip2 T1D_5 T1D TGTGCTGAGCTCGGGGAAAGAGGAGGTGCTGACGGACTCACCTCT CAELGERGGADGLTS TRAV41*01 TRAJ45*01 21.0 928.0 TGCGCCAGCAGCCCCTGGGACACCTCCTACGAGCAGTACTTC CASSPWDTSYEQYF TRBV4-1*01 TRBJ2-7*01 13.0 622.0 CAELGERGGADGLTS_CASSPWDTSYEQYF 1 6356 BZLF1-190-197 EBV 0.71 2156 NEG 478 5878 10 EBV BZLF1 RAKFKQLL effector memory T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-B*08:01 B2M MHCI -5459 chip0423_455012 12.35 6.11 Chip2 T1D_5 T1D TGTGCTGGGCTCGGGGAAGGAGGAAGTGCTGACGGACTCACCTTT CAGLGEGGSADGLTF TRAV41*01 TRAJ45*01 125.0 6304.0 CAGLGEGGSADGLTF_ 1 6375 BZLF1-190-197 EBV 0.5 2156 NEG 430 5945 10 EBV BZLF1 RAKFKQLL effector memory T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-B*08:01 B2M MHCI -5460 chip0423_182213 13.5 6.73 Chip2 T1D_4 T1D TGTGCTGTGAGAGACACGACGTGGGATGACAAGATCATCTTT CAVRDTTWDDKIIF TRAV3*01 TRAJ30*01 71.0 3908.0 TGTGCCAGCAGCTTAGGAGGGGGAGAGGGGGCCAGTGAGCAGTTCTTC CASSLGGGEGASEQFF TRBV7-6*01 TRBJ2-1*01 62.0 3450.0 CAVRDTTWDDKIIF_CASSLGGGEGASEQFF 12 7976 EBNA3A-193-201 EBV 0.5 1022 NEG 464 7512 10 EBV EBNA3A FLRGRAYGL effector memory T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-B*08:01 B2M MHCI -5461 chip0423_103681 8.93 7.45 Chip2 tet_neg TGCATCCTGCCTCTTGCTGGTGGTACTAGCTATGGAAAGCTGACATTT CILPLAGGTSYGKLTF TRAV26-2*01 TRAJ52*01 106.0 4842.0 TGTGCCAGCAGGGGGACTAGCCTTACCTACGAGCAGTACTTC CASRGTSLTYEQYF TRBV6-2*01,TRBV6-3*01 TRBJ2-7*01 49.0 2569.0 CILPLAGGTSYGKLTF_CASRGTSLTYEQYF 1 9605 EBNA3A-193-201 EBV 0.82 1022 NEG 456 9149 8 EBV EBNA3A FLRGRAYGL effector memory T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-B*08:01 B2M MHCI -5462 chip0423_755458 12.79 6.18 Chip2 T1D_5 T1D TGTGCAGCAAGGGAAACCTCCTACGACAAGGTGATATTT CAARETSYDKVIF TRAV13-1*01 TRAJ50*01 19.0 1786.0 TGTGCCAGCAGCTTGCTCGGGACAGAAGATGAAAAACTGTTTTTT CASSLLGTEDEKLFF TRBV7-9*01 TRBJ1-4*01 58.0 1596.0 CAARETSYDKVIF_CASSLLGTEDEKLFF 1 5207 BZLF1-190-197 EBV 0.5 2156 NEG 426 4781 10 EBV BZLF1 RAKFKQLL effector memory T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-B*08:01 B2M MHCI -5463 chip0423_879355 5.48 8.69 Chip2 T1D_4 T1D TGTGCCGTGAACCGCTTCTTGGCCGACAGAGGCTCAACCCTGGGGAGGCTATACTTT CAVNRFLADRGSTLGRLYF TRAV12-2*01 TRAJ18*01 3.0 79.0 TGCGCCAGCAGCCAAGAAGTCACAGATACGCAGTATTTT CASSQEVTDTQYF TRBV4-3*01 TRBJ2-3*01 177.0 7202.0 CAVNRFLADRGSTLGRLYF_CASSQEVTDTQYF 4 7250 EBV-LMP1-1 EBV 1.0 237 NEG 376 6874 6 EBV LMP1 YLLEMLWRL central memory T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*02:01 B2M MHCI -5464 chip0423_292493 11.16 6.21 Chip2 T1D_5 T1D TGTGCAGCAAGGGAAACCTCCTACGACAAGGTGATATTT CAARETSYDKVIF TRAV13-1*01 TRAJ50*01 17.0 1383.0 TGTGCAGCAAGGGAAAACCTCCTACGACAAGGTGATATTT CAARENct??ccYDKVIF TRAV13-1*01 TRAJ50*01 25.0 1875.0 0.52 TGTGCCAGCACCAACCTGGGAGGGTTCACAGATACGCAGTATTTT CASTNLGGFTDTQYF TRBV7-9*01 TRBJ2-3*01 104.0 4392.0 CAARETSYDKVIF_CASTNLGGFTDTQYF 1 8019 BZLF1-190-197 EBV 0.45 2156 NEG 430 7589 10 EBV BZLF1 RAKFKQLL effector memory T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-B*08:01 B2M MHCI -5465 chip0423_595059 11.73 6.19 Chip2 T1D_5 T1D TGTGCCAGCAGTTTATTGAGCTCCTATAATTCACCCCTCCACTTT CASSLLSSYNSPLHF TRBV12-3*01,TRBV12-4*01 TRBJ1-6*01 45.0 1885.0 _CASSLLSSYNSPLHF 3 6165 BZLF1-190-197 EBV 0.44 2156 NEG 423 5742 10 EBV BZLF1 RAKFKQLL effector memory T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-B*08:01 B2M MHCI -5466 chip0423_477884 9.9 6.77 Chip2 T1D_4 T1D TGTGCTACGGAGGGGGGTTCGGGATACAGCACCCTCACCTTT CATEGGSGYSTLTF TRAV17*01 TRAJ11*01 117.0 4583.0 TGTGCAATGAGCCTCTCGAATACTGGAGGCTTCAAAACTATCTTT CAMSLSNTGGFKTIF TRAV12-3*01 TRAJ9*01 98.0 4083.0 0.38 TGTGCCAGCACCGAGGGGACTAGCGGGGGAAGGGGCACCGGGGAGCTGTTTTTT CASTEGTSGGRGTGELFF TRBV2*01 TRBJ2-2*01 22.0 789.0 CATEGGSGYSTLTF_CASTEGTSGGRGTGELFF 1 14425 PGT-178 PGT 0.69 1480 PGT-178 403 14022 10 HomoSapiens PGT LLAGIGTVPI effector memory T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*02:01 B2M MHCI -5467 chip0423_336986 13.13 6.46 Chip2 T1D_4 T1D TGTGCCCCTTCTCTGAATTCTGGGGGTTACCAGAAAGTTACCTTT CAPSLNSGGYQKVTF TRAV2*01 TRAJ13*01 5.0 108.0 TGTGCCAGCAGTGTAGTAGGGGGCGACTATGGCTACACCTTC CASSVVGGDYGYTF TRBV2*01 TRBJ1-2*01 35.0 2363.0 CAPSLNSGGYQKVTF_CASSVVGGDYGYTF 5 6625 EBNA3A-193-201 EBV 0.64 1022 NEG 496 6129 10 EBV EBNA3A FLRGRAYGL effector memory T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-B*08:01 B2M MHCI -5468 chip0423_201398 11.31 6.68 Chip2 T1D_4 T1D TGCATCCTGCCTCTTGCTGGTGGTACTAGCTATGGAAAGCTGACATTT CILPLAGGTSYGKLTF TRAV26-2*01 TRAJ52*01 85.0 3650.0 TGTGCCAGCAGCTTAGGGCAAGCCTACGAGCAGTACTTC CASSLGQAYEQYF TRBV7-8*01 TRBJ2-7*01 74.0 3557.0 CILPLAGGTSYGKLTF_CASSLGQAYEQYF 308 8031 EBNA3A-193-201 EBV 0.92 1022 NEG 399 7632 10 EBV EBNA3A FLRGRAYGL effector memory T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-B*08:01 B2M MHCI -5469 chip0423_248584 8.09 8.16 Chip2 T1D_5 T1D TGTGCAGGCGCGGAAACCTCCTACGACAAGGTGATATTT CAGAETSYDKVIF TRAV13-1*01 TRAJ50*01 3.0 232.0 TGTGCCAGCAGCTTACTTGGCGGAGACTCTGGAAACACCATATATTTT CASSLLGGDSGNTIYF TRBV7-9*01 TRBJ1-3*01 40.0 1428.0 CAGAETSYDKVIF_CASSLLGGDSGNTIYF 6 11594 BZLF1-190-197 EBV 0.43 2156 BZLF1-190-197 421 11173 8 EBV BZLF1 RAKFKQLL effector memory T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-B*08:01 B2M MHCI -5470 chip0423_188845 8.89 7.82 Chip2 T1D_4 T1D TGTGCTGTCCCAGGAGGAAGCCAAGGAAATCTCATCTTT CAVPGGSQGNLIF TRAV8-3*01 TRAJ42*01 38.0 3409.0 TGTGCCAGCAGTGAGTGGGAGCTGAACTATGGCTACACCTTC CASSEWELNYGYTF TRBV25-1*01 TRBJ1-2*01 115.0 6071.0 CAVPGGSQGNLIF_CASSEWELNYGYTF 1 9321 EBV-BRLF1 EBV 0.4 1264 EBV-BRLF1 401 8920 8 EBV BRLF1 YVLDHLIVV effector memory T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*02:01 B2M MHCI -5471 chip0423_446563 9.26 9.28 Chip2 T1D_4 T1D TGTGCTGTGAGTGATGGAGAAGGAGCCCAGAAGCTGGTATTT CAVSDGEGAQKLVF TRAV8-6*01 TRAJ54*01 11.0 482.0 TGTGCCAGCAGCTTAACGGTTCTGGCAGGTCCAAACACTGAAGCTTTCTTT CASSLTVLAGPNTEAFF TRBV7-3*01 TRBJ1-1*01 39.0 811.0 CAVSDGEGAQKLVF_CASSLTVLAGPNTEAFF 44 4917 BZLF1-190-197 EBV 0.88 2156 BZLF1-190-197 403 4514 8 EBV BZLF1 RAKFKQLL effector memory T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-B*08:01 B2M MHCI -5472 chip0423_43212 0.04 6.4 Chip2 T1D_4 T1D TGTGCAGCAAGCTTGAGCGACTACAAGCTCAGCTTT CAASLSDYKLSF TRAV29/DV5*01 TRAJ20*01 17.0 1018.0 TGTGCCAGCAGCCCCAGGGAAACGGGCAATCAGCCCCAGCATTTT CASSPRETGNQPQHF TRBV28*01 TRBJ1-5*01 55.0 2326.0 CAASLSDYKLSF_CASSPRETGNQPQHF 1 13199 PGT-178 PGT 0.53 1480 PGT-178 355 12844 3 HomoSapiens PGT LLAGIGTVPI Naive T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*02:01 B2M MHCI -5473 chip0423_759776 12.73 6.38 Chip2 T1D_4 T1D TGTGCTGTCAATTCAGGAAACACACCTCTTGTCTTT CAVNSGNTPLVF TRAV1-2*01 TRAJ29*01 10.0 694.0 TGTGCCAGCAGCCAAGTCAACAACCCGGGGGATGGCTACACCTTC CASSQVNNPGDGYTF TRBV14*01 TRBJ1-2*01 22.0 739.0 CAVNSGNTPLVF_CASSQVNNPGDGYTF 31 5969 EBNA3A-158-166 EBV 0.69 444 NEG 436 5533 10 EBV EBNA3A QAKWRLQTL effector memory T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-B*08:01 B2M MHCI -5474 chip0423_213373 5.46 8.77 Chip2 T1D_4 T1D TGTGCTCTTACTACCAATGGTCAGCGTTTTGTCTTT CALTTNGQRFVF TRAV38-1*01 TRAJ26*01 7.0 639.0 TGCAGTGCCTCTCGTGACTCCTACGAGCAGTACTTC CSASRDSYEQYF TRBV20-1*01 TRBJ2-7*01 16.0 1651.0 CALTTNGQRFVF_CSASRDSYEQYF 1 10054 EBV-LMP1-1 EBV 0.59 237 NEG 364 9690 6 EBV LMP1 YLLEMLWRL central memory T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*02:01 B2M MHCI -5475 chip0423_551206 10.0 6.94 Chip2 T1D_6 T1D TGTGCCAGCAGCCCTCCTCTATCCTACGAGCAGTACTTC CASSPPLSYEQYF TRBV9*01 TRBJ2-7*01 13.0 718.0 _CASSPPLSYEQYF 3 9081 NP140-148 FLU 0.76 102 NP140-148 423 8658 10 InfluenzaA NP HSNLNDATY effector memory T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*01:01 B2M MHCI -5476 chip0423_176790 12.89 6.28 Chip2 T1D_5 T1D TGTGCAGCAACGGAAACCTCCTACGACAAGGTGATATTT CAATETSYDKVIF TRAV13-1*01 TRAJ50*01 83.0 5417.0 TGTGCCAGCAGCCCTCTTGGGAGCAATGAAAAACTGTTTTTT CASSPLGSNEKLFF TRBV7-9*01 TRBJ1-4*01 116.0 3818.0 CAATETSYDKVIF_CASSPLGSNEKLFF 25 6122 BZLF1-190-197 EBV 0.78 2156 NEG 436 5686 10 EBV BZLF1 RAKFKQLL effector memory T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-B*08:01 B2M MHCI -5477 chip0423_257913 13.49 6.62 Chip2 T1D_5 T1D TGCATCCTGCTGGAAACCTCCTACGACAAGGTGATATTT CILLETSYDKVIF TRAV26-2*01 TRAJ50*01 45.0 1954.0 TGTGCCAGCAGCCACACCCAGAGAGGCAACACTGAAGCTTTCTTT CASSHTQRGNTEAFF TRBV7-9*01 TRBJ1-1*01 77.0 1293.0 CILLETSYDKVIF_CASSHTQRGNTEAFF 1 5782 BZLF1-190-197 EBV 0.7 2156 NEG 403 5379 10 EBV BZLF1 RAKFKQLL effector memory T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-B*08:01 B2M MHCI -5478 chip0423_358725 7.89 8.31 Chip2 T1D_4 T1D TGTGTGGTGCCCTCAGGAGGAAGCTACATACCTACATTT CVVPSGGSYIPTF TRAV12-1*01 TRAJ6*01 24.0 1720.0 TGTGCCAGCAGCCAAGGACAGGCCTACGAGCAGTACTTC CASSQGQAYEQYF TRBV7-8*01 TRBJ2-7*01 41.0 2235.0 CVVPSGGSYIPTF_CASSQGQAYEQYF 1 10920 EBNA3A-193-201 EBV 0.54 1022 EBNA3A-193-201 366 10554 8 EBV EBNA3A FLRGRAYGL effector memory T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-B*08:01 B2M MHCI -5479 chip0423_537671 13.66 6.79 Chip2 T1D_4 T1D TGCATCGTCAGAGAGGGAGGAGGTGCTGACGGACTCACCTTT CIVREGGGADGLTF TRAV26-1*01 TRAJ45*01 44.0 2470.0 TGTGCCAGCAGCTTAGCGGTCGGAGAAGGGCCCCAGCATTTT CASSLAVGEGPQHF TRBV7-9*01 TRBJ1-5*01 44.0 2178.0 CIVREGGGADGLTF_CASSLAVGEGPQHF 68 5963 BZLF1-190-197 EBV 0.85 2156 BZLF1-190-197 394 5569 10 EBV BZLF1 RAKFKQLL effector memory T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-B*08:01 B2M MHCI -5480 chip0423_167216 5.61 9.21 Chip2 T1D_4 T1D TGTGCTTTCCCAGGTGGGGGCCAGGGGAGTCTCATCTTT CAFPGGGQGSLIF TRAV8-3*01 TRAJ42*01 24.0 1972.0 TGTGCCAGCAGTTACTCAAGTACAGGGGAGTACTTC CASSYSSTGEYF TRBV6-2*01,TRBV6-3*01 TRBJ2-7*01 53.0 3215.0 CAFPGGGQGSLIF_CASSYSSTGEYF 1 9446 EBV-LMP1-1 EBV 0.89 237 NEG 327 9119 6 EBV LMP1 YLLEMLWRL central memory T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*02:01 B2M MHCI -5481 chip0423_218388 9.15 7.57 Chip2 T1D_4 T1D TGTGCCAGCAGCTCAGCGGTCGGAGAAGGGCCCCAGCATTTT CASSSAVGEGPQHF TRBV7-9*01 TRBJ1-5*01 29.0 1412.0 _CASSSAVGEGPQHF 1 8064 BZLF1-190-197 EBV 0.56 2156 BZLF1-190-197 377 7687 8 EBV BZLF1 RAKFKQLL effector memory T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-B*08:01 B2M MHCI -5482 chip0423_790255 11.06 6.26 Chip2 T1D_5 T1D TGTGCAGCGCCTGAAACCTCCTACGACAAGGTGATATTT CAAPETSYDKVIF TRAV13-1*01 TRAJ50*01 29.0 2257.0 TGCATCGTCTCCGATCCCGTCGGACACATTTTGGAGGAGGCCAAGGAAATCTCATCTTT CIVSDPVGHat?FGGGQGNLIF TRAV26-1*01 TRAJ42*01 24.0 837.0 0.28 TGTGCCAGCAGCTTATTAGGGGAGCAGAATTCACCCCTCCACTTT CASSLLGEQNSPLHF TRBV7-9*01 TRBJ1-6*01 125.0 2896.0 CAAPETSYDKVIF_CASSLLGEQNSPLHF 4 10033 BZLF1-190-197 EBV 0.75 2156 NEG 388 9645 10 EBV BZLF1 RAKFKQLL effector memory T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-B*08:01 B2M MHCI -5483 chip0423_176795 5.68 9.45 Chip2 T1D_4 T1D TGTGCTGTGCTCCAGGATAGCAACTATCAGTTAATCTGG CAVLQDSNYQLIW TRAV21*01,TRAV12-2*01 TRAJ33*01 112.0 7522.0 TGCGCCAGCAGTGATGACGGAATGAACACTGAAGCTTTCTTT CASSDDGMNTEAFF TRBV10-2*01 TRBJ1-1*01 103.0 4400.0 CAVLQDSNYQLIW_CASSDDGMNTEAFF 8 8010 EBV-LMP2A EBV 0.91 700 EBV-LMP2A 358 7652 6 EBV LMP2A CLGGLLTMV central memory T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*02:01 B2M MHCI -5484 chip0423_303351 5.51 8.75 Chip2 T1D_5 T1D TGTGCAGACCTAGAAACCTCCTACGACAAGGTGATATTT CADLETSYDKVIF TRAV13-2*01 TRAJ50*01 24.0 2058.0 TGTGCCAGCAGCTCCCTTGGGACAGCAAACAATTCACCCCTCCACTTT CASSSLGTANNSPLHF TRBV7-9*01 TRBJ1-6*01 69.0 2588.0 CADLETSYDKVIF_CASSSLGTANNSPLHF 1 5639 BZLF1-190-197 EBV 0.92 2156 NEG 376 5263 6 EBV BZLF1 RAKFKQLL central memory T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-B*08:01 B2M MHCI -5485 chip0423_337109 12.25 6.13 Chip2 T1D_5 T1D TGTGCCAGCAGCCACACGACTAGCGGGGGGGTAGAGCAGTACTTC CASSHTTSGGVEQYF TRBV7-9*01 TRBJ2-7*01 68.0 3206.0 _CASSHTTSGGVEQYF 1 5615 BZLF1-190-197 EBV 0.93 2156 NEG 395 5220 6 EBV BZLF1 RAKFKQLL central memory T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-B*08:01 B2M MHCI -5486 chip0423_384892 12.66 6.16 Chip2 T1D_5 T1D TGTGCAGCAACGGAAACCTCCTACGACAAGGTGATATTT CAATETSYDKVIF TRAV13-1*01 TRAJ50*01 70.0 6304.0 TGTGCCAGCAGCCCTCTTGGGAGCAATGAAAAACTGTTTTTT CASSPLGSNEKLFF TRBV7-9*01 TRBJ1-4*01 43.0 2297.0 CAATETSYDKVIF_CASSPLGSNEKLFF 25 6093 BZLF1-190-197 EBV 0.75 2156 NEG 363 5730 10 EBV BZLF1 RAKFKQLL effector memory T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-B*08:01 B2M MHCI -5487 chip0423_415977 8.11 8.65 Chip2 T1D_4 T1D TGTGCTGTGGCATACTCTGGGGCTGGGAGTTACCAACTCACTTTC CAVAYSGAGSYQLTF TRAV21*01 TRAJ28*01 44.0 2337.0 TGCATCGTCAGAGAGGGAGGCGGTGCTGACGGACTCCCCTTT CIVREGGGADGLPF TRAV26-1*01 TRAJ45*01 38.0 2019.0 0.38 TGTGCCAGCAGCTTAGCGGTCGGAGAAGGGCCCCAGCATTTT CASSLAVGEGPQHF TRBV7-9*01 TRBJ1-5*01 64.0 2737.0 CAVAYSGAGSYQLTF_CASSLAVGEGPQHF 1 8984 BZLF1-190-197 EBV 0.83 2156 BZLF1-190-197 311 8673 8 EBV BZLF1 RAKFKQLL effector memory T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-B*08:01 B2M MHCI -5488 chip0423_184169 10.74 6.64 Chip2 T1D_6 T1D TGCGCCAGCAGTGACATTAGGGAGGGGCAGGGTGAAGCTTTCTTT CASSDIREGQGEAFF TRBV10-2*01 TRBJ1-1*01 68.0 2422.0 _CASSDIREGQGEAFF 37 9290 EBNA3A-158-166 EBV 0.85 444 EBNA3A-158-166 346 8944 10 EBV EBNA3A QAKWRLQTL effector memory T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-B*08:01 B2M MHCI -5489 chip0423_341702 9.01 7.55 Chip2 T1D_5 T1D TGTGCTAGTGGTTTGGTAGAGGGCACCGGGGAGCTGTTTTTT CASGLVEGTGELFF TRBV12-5*01 TRBJ2-2*01 13.0 959.0 _CASGLVEGTGELFF 5 9909 BZLF1-190-197 EBV 0.5 2156 NEG 359 9550 8 EBV BZLF1 RAKFKQLL effector memory T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-B*08:01 B2M MHCI -5490 chip0423_468697 12.54 6.33 Chip2 T1D_4 T1D TGTGCTGTGAGTGCTGGAGAAGGCGCCCAGCAGCTGGTCTTT CAVSAGEGAQQLVF TRAV8-6*01 TRAJ54*01 7.0 153.0 TGTGCCAGCAGCTTAACGGTTCTGGCAGGTCCAAACACTGAAGCTTTCTTT CASSLTVLAGPNTEAFF TRBV7-3*01 TRBJ1-1*01 24.0 601.0 CAVSAGEGAQQLVF_CASSLTVLAGPNTEAFF 1 6325 BZLF1-190-197 EBV 0.83 2156 BZLF1-190-197 371 5954 10 EBV BZLF1 RAKFKQLL effector memory T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-B*08:01 B2M MHCI -5491 chip0423_434472 13.43 6.68 Chip2 T1D_5 T1D TGTGCAGCAATCGAAACCTCCTACGACAAGGTGATATTT CAAIETSYDKVIF TRAV13-1*01 TRAJ50*01 34.0 2042.0 TGCAGCGTTGGGGGGAACACTGAAGCTTTCTTT CSVGGNTEAFF TRBV29-1*01 TRBJ1-1*01 248.0 17595.0 CAAIETSYDKVIF_CSVGGNTEAFF 4 4727 BZLF1-190-197 EBV 0.44 2156 BZLF1-190-197 390 4337 10 EBV BZLF1 RAKFKQLL effector memory T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-B*08:01 B2M MHCI -5492 chip0423_487739 10.23 6.61 Chip2 T1D_6 T1D TGTGCTACGGAGGGGGGTTCAGGATACAGCACCCTCACCTTT CATEGGSGYSTLTF TRAV17*01 TRAJ11*01 100.0 3620.0 TGTGCCAGCAGTAGACAGGGGGGGAACTATGGCTACACCTTC CASSRQGGNYGYTF TRBV6-1*01 TRBJ1-2*01 28.0 1151.0 CATEGGSGYSTLTF_CASSRQGGNYGYTF 1 12957 EBV-LMP2-FLY EBV 0.4 355 NEG 343 12614 10 EBV LMP2 FLYALALLL effector memory T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*02:01 B2M MHCI -5493 chip0423_299512 12.44 6.31 Chip2 T1D_6 T1D TGTGCCAGCAGCTTGGGACAGGCCTACGAGCAGTACTTC CASSLGQAYEQYF TRBV7-8*01 TRBJ2-7*01 51.0 2294.0 _CASSLGQAYEQYF 175 7431 EBNA3A-193-201 EBV 0.62 1022 EBNA3A-193-201 364 7067 10 EBV EBNA3A FLRGRAYGL effector memory T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-B*08:01 B2M MHCI -5494 chip0423_842700 11.64 6.29 Chip2 T1D_6 T1D TGCATCCTCCCACTTGCTGGTGGTACTAGCTATGGAAAGCTGACATTT CILPLAGGTSYGKLTF TRAV26-2*01 TRAJ52*01 35.0 1991.0 TGTGCCAGCAGCTTGGGACAGGCCTACGAGCAGTACTTC CASSLGQAYEQYF TRBV7-8*01 TRBJ2-7*01 34.0 2018.0 CILPLAGGTSYGKLTF_CASSLGQAYEQYF 308 8289 EBNA3A-193-201 EBV 0.57 1022 EBNA3A-193-201 361 7928 10 EBV EBNA3A FLRGRAYGL effector memory T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-B*08:01 B2M MHCI -5495 chip0423_808849 7.88 7.85 Chip2 tet_neg TGTGCCAGCAGTTACTCAAGTACAGGGGAGTACTTC CASSYSSTGEYF TRBV6-2*01,TRBV6-3*01 TRBJ2-7*01 4.0 373.0 _CASSYSSTGEYF 32 11380 EBV-LMP1-1 EBV 0.62 237 NEG 365 11015 8 EBV LMP1 YLLEMLWRL effector memory T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*02:01 B2M MHCI -5496 chip0423_12150 11.47 6.16 Chip2 T1D_4 T1D TGTGCCAGCAGCCAAGTCAACAACCCGGGGGATGGCTACACCTTC CASSQVNNPGDGYTF TRBV14*01 TRBJ1-2*01 20.0 500.0 _CASSQVNNPGDGYTF 94 8754 EBNA3A-158-166 EBV 0.43 444 EBNA3A-158-166 399 8355 10 EBV EBNA3A QAKWRLQTL effector memory T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-B*08:01 B2M MHCI -5497 chip0423_842141 12.33 6.57 Chip2 T1D_4 T1D TGTGCTGTCAACTCAGGAAACACACCTCTTGTCTTT CAVNSGNTPLVF TRAV1-2*01 TRAJ29*01 19.0 1610.0 TGTGCCAGCAGCCAAGTCAACAACCCGGGGGATGGCTACACCTTC CASSQVNNPGDGYTF TRBV14*01 TRBJ1-2*01 13.0 362.0 CAVNSGNTPLVF_CASSQVNNPGDGYTF 31 6330 EBNA3A-158-166 EBV 1.0 444 NEG 398 5932 10 EBV EBNA3A QAKWRLQTL effector memory T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-B*08:01 B2M MHCI -5498 chip0423_752579 13.36 6.66 Chip2 T1D_4 T1D TGCATCCTGCCTCTTGCTGGTGGTACTAGCTATGGAAAGCTGACATTT CILPLAGGTSYGKLTF TRAV26-2*01 TRAJ52*01 64.0 3633.0 TGTGCCAGCAGCTTAGGGCAAGCCTACGAGCAGTACTTC CASSLGQAYEQYF TRBV7-8*01 TRBJ2-7*01 51.0 2464.0 CILPLAGGTSYGKLTF_CASSLGQAYEQYF 308 5788 EBNA3A-193-201 EBV 0.58 1022 NEG 374 5414 10 EBV EBNA3A FLRGRAYGL effector memory T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-B*08:01 B2M MHCI -5499 chip0423_498640 11.47 6.37 Chip2 T1D_4 T1D TGTGCAGCAAGCGCGGGACTATACTCTGGGGCTGGGAGTTACCAACTCACTTTC CAASAGLYSGAGSYQLTF TRAV29/DV5*01 TRAJ28*01 23.0 591.0 TGTGCCAGCAGTTTGAACCCCGTTCTTCGGTTAGATACGCAGTATTTT CASSLNPVLRLDTQYF TRBV28*01 TRBJ2-3*01 16.0 445.0 CAASAGLYSGAGSYQLTF_CASSLNPVLRLDTQYF 1 7386 EBNA3A-158-166 EBV 0.89 444 NEG 384 7002 6 EBV EBNA3A QAKWRLQTL central memory T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-B*08:01 B2M MHCI -5500 chip0423_846553 6.08 9.2 Chip2 T1D_4 T1D TGTGCAGCAACGGAAACCTCCTACGACAAGGTGATATTT CAATETSYDKVIF TRAV13-1*01 TRAJ50*01 32.0 2025.0 TGCAGTGCCATCGAATTCCGGGACCCTAATCAGCCCCAGCATTTT CSAIEFRDPNQPQHF TRBV20-1*01 TRBJ1-5*01 92.0 4259.0 CAATETSYDKVIF_CSAIEFRDPNQPQHF 1 9824 EBV-LMP1-1 EBV 0.74 237 EBV-LMP1-1 340 9484 6 EBV LMP1 YLLEMLWRL central memory T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*02:01 B2M MHCI -5501 chip0423_207951 13.03 6.95 Chip2 T1D_5 T1D TGTGCCAGCAGCCATAGCTCCACCGGGGAGCTGTTTTTT CASSHSSTGELFF TRBV12-3*01,TRBV12-4*01 TRBJ2-2*01 78.0 4776.0 _CASSHSSTGELFF 3 4036 BZLF1-190-197 EBV 0.83 2156 NEG 370 3666 10 EBV BZLF1 RAKFKQLL effector memory T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-B*08:01 B2M MHCI -5502 chip0423_739299 11.45 6.15 Chip2 T1D_5 T1D TGTGCAGCAATCGAAACCTCCTACGACAAGGTGATATTT CAAIETSYDKVIF TRAV13-1*01 TRAJ50*01 20.0 1668.0 TGCAGCGTGGGGGGGAACACTGAAGCTTTCTTT CSVGGNTEAFF TRBV29-1*01 TRBJ1-1*01 235.0 18851.0 CAAIETSYDKVIF_CSVGGNTEAFF 4 7717 BZLF1-190-197 EBV 0.5 2156 NEG 375 7342 10 EBV BZLF1 RAKFKQLL effector memory T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-B*08:01 B2M MHCI -5503 chip0423_454610 12.77 6.42 Chip2 T1D_4 T1D TGTGCCAGCAGCCAAGTCAACAACCCGGGGGATGGCTACACCTTC CASSQVNNPGDGYTF TRBV14*01 TRBJ1-2*01 59.0 1158.0 _CASSQVNNPGDGYTF 94 9495 EBNA3A-158-166 EBV 0.51 444 EBNA3A-158-166 365 9130 10 EBV EBNA3A QAKWRLQTL effector memory T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-B*08:01 B2M MHCI -5504 chip0423_450834 16.6 10.78 Chip2 T1D_5 T1D TGTGCAGCACGGGAAACCTCCTACGACAAGATGATATTT CAARETSYDKMIF TRAV13-1*01 TRAJ50*01 27.0 2005.0 TGTGCCAGCAGCTTAGTACAGGGCTACGAGCAGTACTTC CASSLVQGYEQYF TRBV7-9*01 TRBJ2-7*01 77.0 3822.0 CAARETSYDKMIF_CASSLVQGYEQYF 1 3460 BZLF1-190-197 EBV 0.4 2156 NEG 333 3127 12 EBV BZLF1 RAKFKQLL effector T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-B*08:01 B2M MHCI -5505 chip0423_790371 -0.12 7.52 Chip2 T1D_4 T1D TGTGCCGTGAACTCGCGCGGATCTGAAAAGCTGGTCTTT CAVNSRGSEKLVF TRAV12-2*01 TRAJ57*01 31.0 2148.0 TGTGCCGTGGGCGAGGGTAATGCAGGCCACTTGCTCGCCTTT CAVGEGNAGHLLAF TRAV12-2*01 TRAJ39*01 20.0 1798.0 0.31 TGTGCCAGCACCCCAAGGGCGCTTACTGGAAACACCATATATTTT CASTPRALTGNTIYF TRBV3-1*01 TRBJ1-3*01 51.0 2359.0 CAVNSRGSEKLVF_CASTPRALTGNTIYF 1 13758 PGT-178 PGT 0.72 1480 PGT-178 330 13428 3 HomoSapiens PGT LLAGIGTVPI Naive T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*02:01 B2M MHCI -5506 chip0423_168075 9.06 7.62 Chip2 T1D_4 T1D TGTGCTGTCAATTCAAGAAACACACCTCTTGTCTTT CAVNSRNTPLVF TRAV1-2*01 TRAJ29*01 22.0 2023.0 TGTGCCAGCAGCCAAGTCAACAACCCGGGGGATGGCTACACCTTC CASSQVNNPGDGYTF TRBV14*01 TRBJ1-2*01 22.0 770.0 CAVNSRNTPLVF_CASSQVNNPGDGYTF 1 11253 EBNA3A-158-166 EBV 0.7 444 EBNA3A-158-166 351 10902 8 EBV EBNA3A QAKWRLQTL effector memory T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-B*08:01 B2M MHCI -5507 chip0423_109472 5.33 9.12 Chip2 T1D_4 T1D TGTGCTCTCACTACCTATGGTCAGAATTTTGTCTTT CALTTYGQNFVF TRAV38-1*01 TRAJ26*01 9.0 941.0 TGCAGTGCCTCTCGTGACTCCTACGAGCAGTACTTC CSASRDSYEQYF TRBV20-1*01 TRBJ2-7*01 61.0 4818.0 CALTTYGQNFVF_CSASRDSYEQYF 15 5544 EBV-LMP1-1 EBV 0.77 237 NEG 325 5219 6 EBV LMP1 YLLEMLWRL central memory T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*02:01 B2M MHCI -5508 chip0423_227490 12.17 6.08 Chip2 T1D_5 T1D TGTGCAGCAATGGAAACCTCCTACGACAAGGTGATATTT CAAMETSYDKVIF TRAV13-1*01 TRAJ50*01 98.0 3990.0 TGTGCCAGCAGCTACTTAGACAGGGAGAACACTGAAGCTTTCTTT CASSYLDRENTEAFF TRBV7-2*01 TRBJ1-1*01 57.0 1288.0 CAAMETSYDKVIF_CASSYLDRENTEAFF 2 6625 BZLF1-190-197 EBV 0.45 2156 NEG 360 6265 6 EBV BZLF1 RAKFKQLL central memory T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-B*08:01 B2M MHCI -5509 chip0423_854258 14.2 7.28 Chip2 T1D_5 T1D TGTGCAGCGCCTGAAACCTCCTACGACAAGGTGATATTT CAAPETSYDKVIF TRAV13-1*01 TRAJ50*01 50.0 4522.0 TGTGCCAGCAGCTTATTAGGGGAGCAGAATTCACCCCTCCACTTT CASSLLGEQNSPLHF TRBV7-9*01 TRBJ1-6*01 1.0 24.0 CAAPETSYDKVIF_CASSLLGEQNSPLHF 4 5005 BZLF1-190-197 EBV 0.45 2156 NEG 380 4625 10 EBV BZLF1 RAKFKQLL effector memory T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-B*08:01 B2M MHCI -5510 chip0423_714078 14.96 9.28 Chip2 T1D_6 T1D TGCAGCGCCGGCAGGGACGGGACTAATGAAAAACTGTTTTTT CSAGRDGTNEKLFF TRBV29-1*01 TRBJ1-4*01 192.0 9895.0 _CSAGRDGTNEKLFF 159 3153 EBV-BLMF1 EBV 0.44 2531 NEG 363 2790 12 EBV BLMF1 GLCTLVAML effector T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*02:01 B2M MHCI -5511 chip0423_54472 7.41 9.89 Chip2 T1D_4 T1D TGTGCCGTCTACTCAACTGCTAACTATGGCTACACCTTC CAVYSTANYGYTF TRBV24-1*01 TRBJ1-2*01 14.0 1043.0 _CAVYSTANYGYTF 1 6924 G6PC2-NLI-8 IGRP 0.46 32 G6PC2-NLI-8 316 6608 7 HomoSapiens G6PC2 NLIFKWIL transitional T cells between effector and memory populations PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-B*08:01 B2M MHCI -5512 chip0423_153856 9.12 7.43 Chip2 T1D_4 T1D TGTGCAGAGAATGAAACTGGGGCAAACAACCTCTTCTTT CAENETGANNLFF TRAV5*01 TRAJ36*01 15.0 802.0 TGTGCCGCCGCAGGGACAGCTAGCACAGATACGCAGTATTTT CAAAGTASTDTQYF TRBV10-3*01 TRBJ2-3*01 50.0 2883.0 CAENETGANNLFF_CAAAGTASTDTQYF 1 7940 BZLF1-190-197 EBV 0.65 2156 BZLF1-190-197 310 7630 8 EBV BZLF1 RAKFKQLL effector memory T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-B*08:01 B2M MHCI -5513 chip0423_747348 13.96 7.02 Chip2 T1D_5 T1D TGTGCCAGCAGTCCCGCCGGGGCCATAACCGCTAGCACAGATACGCAGTATTTT CASSPAGAITASTDTQYF TRBV12-3*01,TRBV12-4*01 TRBJ2-3*01 78.0 3346.0 _CASSPAGAITASTDTQYF 1 6354 BZLF1-190-197 EBV 0.83 2156 NEG 366 5988 10 EBV BZLF1 RAKFKQLL effector memory T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-B*08:01 B2M MHCI -5514 chip0423_710220 5.67 8.6 Chip2 T1D_4 T1D TGTGCTGGAGACGGTCGAACTGGGGCAAACAACCTCTTCTTT CAGDGRTGANNLFF TRAV36/DV7*01 TRAJ36*01 66.0 2230.0 TGTGCTGTCCTCATGGATAGCAACTATCAGTTAATCTGG CAVLMDSNYQLIW TRAV12-3*01 TRAJ33*01 56.0 3430.0 0.37 TGCGCCAGCAGTGACGACGGGATGAACACTGAAGCTTTCTTT CASSDDGMNTEAFF TRBV10-2*01 TRBJ1-1*01 123.0 4887.0 CAGDGRTGANNLFF_CASSDDGMNTEAFF 2 9107 EBV-LMP2A EBV 0.93 700 NEG 349 8758 6 EBV LMP2A CLGGLLTMV central memory T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*02:01 B2M MHCI -5515 chip0423_334218 11.48 6.2 Chip2 T1D_5 T1D TGTGCAGCAAAGGAAACCTCCTACGACAAGGTGATATTT CAAKETSYDKVIF TRAV13-1*01 TRAJ50*01 62.0 4836.0 TGTGCCAGCAGTTTACTAGGGACAGAGGATAATTCACCCCTCCACTTT CASSLLGTEDNSPLHF TRBV7-9*01 TRBJ1-6*01 37.0 966.0 CAAKETSYDKVIF_CASSLLGTEDNSPLHF 2 10826 BZLF1-190-197 EBV 0.75 2156 BZLF1-190-197 392 10434 10 EBV BZLF1 RAKFKQLL effector memory T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-B*08:01 B2M MHCI -5516 chip0423_446417 14.59 10.23 Chip2 T1D_4 T1D TGCATCCTCAGAGAGGGTGGCGGTCCTGACGGGCTCCCCTTT CILREGGGPDGLPF TRAV26-1*01 TRAJ45*01 30.0 2008.0 TGTGCCAGCAGCTTAGCGGTCGGAGAAGGGCCCCAGCATTTT CASSLAVGEGPQHF TRBV7-9*01 TRBJ1-5*01 45.0 1291.0 CILREGGGPDGLPF_CASSLAVGEGPQHF 1 3449 BZLF1-190-197 EBV 0.74 2156 BZLF1-190-197 342 3107 12 EBV BZLF1 RAKFKQLL effector T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-B*08:01 B2M MHCI -5517 chip0423_98772 10.58 6.69 Chip2 T1D_4 T1D TGTGCAGGTTCCTCAGAAGACAGAGATGACAAGATCATCTTT CAGSSEDRDDKIIF TRAV13-1*01 TRAJ30*01 38.0 1996.0 TGTGCCAGCAGCGTAGGACGGGGGAGCACTGAAGCTTTCTTT CASSVGRGSTEAFF TRBV9*01 TRBJ1-1*01 49.0 2192.0 CAGSSEDRDDKIIF_CASSVGRGSTEAFF 1 7918 BZLF1-190-197 EBV 0.63 2156 BZLF1-190-197 312 7606 10 EBV BZLF1 RAKFKQLL effector memory T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-B*08:01 B2M MHCI -5518 chip0423_64817 7.84 8.61 Chip2 T1D_4 T1D TGTGCATCTAATACCGGCACTGCCAGTAAACTCACCTTT CASNTGTASKLTF TRAV29/DV5*01 TRAJ44*01 23.0 1565.0 TGTGCCAGCAGCTTAGCGGTCGGAGAAGGGCCCCAGCATTTT CASSLAVGEGPQHF TRBV7-9*01 TRBJ1-5*01 31.0 1155.0 CASNTGTASKLTF_CASSLAVGEGPQHF 1 8747 BZLF1-190-197 EBV 0.4 2156 BZLF1-190-197 342 8405 8 EBV BZLF1 RAKFKQLL effector memory T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-B*08:01 B2M MHCI -5519 chip0423_157214 8.87 7.9 Chip2 tet_neg TGTGCTGTGAGTGATGGAGAAGGAGCCCAGAAGCTGGTATTT CAVSDGEGAQKLVF TRAV8-6*01 TRAJ54*01 74.0 2287.0 TGTGCCAGCAGTCAAGACCCGAGGACACAGGGTGTTCAGCCCCAGCATTTT CASSQDPRTQGVQPQHF TRBV6-2*01,TRBV6-3*01 TRBJ1-5*01 47.0 1220.0 CAVSDGEGAQKLVF_CASSQDPRTQGVQPQHF 1 7596 BZLF1-190-197 EBV 0.92 2156 BZLF1-190-197 323 7273 8 EBV BZLF1 RAKFKQLL effector memory T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-B*08:01 B2M MHCI -5520 chip0423_184129 15.31 8.81 Chip2 T1D_4 T1D TGCGGCCCAGAACGAGATTCAGGAAACACACCTCTTGTCTTT CGPERDSGNTPLVF TRAV30*01 TRAJ29*01 62.0 2700.0 TGTGCCAGCAGCTGGGGCCCTGAAGCTTTCTTT CASSWGPEAFF TRBV7-9*01 TRBJ1-1*01 62.0 4347.0 CGPERDSGNTPLVF_CASSWGPEAFF 1 5151 EBNA3A-193-201 EBV 0.72 1022 EBNA3A-193-201 362 4789 12 EBV EBNA3A FLRGRAYGL effector T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-B*08:01 B2M MHCI -5521 chip0423_89387 5.52 9.57 Chip2 T1D_4 T1D TGTGCTGTCCCAGGAGGAAGCCAAGGAAATCTCATCTTT CAVPGGSQGNLIF TRAV8-3*01 TRAJ42*01 48.0 2722.0 TGTGCCAGCAGTTACTCAAGTACAGGGGAGTACTTC CASSYSSTGEYF TRBV6-2*01,TRBV6-3*01 TRBJ2-7*01 1.0 65.0 CAVPGGSQGNLIF_CASSYSSTGEYF 20 7615 EBV-LMP1-1 EBV 0.83 237 NEG 317 7298 6 EBV LMP1 YLLEMLWRL central memory T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*02:01 B2M MHCI -5522 chip0423_510733 6.44 12.66 Chip2 T1D_6 T1D _ 6746 4215 PA-46-54 FLU 1.0 18 NEG 304 3911 7 InfluenzaA PA FMYSDFHFI transitional T cells between effector and memory populations PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*02:01 B2M MHCI -5523 chip0423_362526 14.16 7.25 Chip2 healthy_4 healthy TGTGCTGTAAACTTCAACAAATTTTACTTT CAVNFNKFYF TRAV8-3*01 TRAJ21*01 26.0 4086.0 TGTGCCAGCAGCGCAACAGGGGACTACTATGGCTACACCTTC CASSATGDYYGYTF TRBV3-1*01 TRBJ1-2*01 18.0 1271.0 CAVNFNKFYF_CASSATGDYYGYTF 1 4802 EBV-BRLF1 EBV 0.8 1264 NEG 361 4441 10 EBV BRLF1 YVLDHLIVV effector memory T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*02:01 B2M MHCI -5524 chip0423_192783 12.86 6.35 Chip2 T1D_4 T1D TGTGCCAGCAGCCAAGTCAACAACCCGGGGGATGGCTACACCTTC CASSQVNNPGDGYTF TRBV14*01 TRBJ1-2*01 31.0 1027.0 _CASSQVNNPGDGYTF 94 6246 EBNA3A-158-166 EBV 0.72 444 NEG 323 5923 10 EBV EBNA3A QAKWRLQTL effector memory T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-B*08:01 B2M MHCI -5525 chip0423_713995 14.05 7.1 Chip2 T1D_5 T1D TGTGCAGCAACGGAAACCTCCTACGACAAGGTGATATTT CAATETSYDKVIF TRAV13-1*01 TRAJ50*01 35.0 2777.0 TGTGCCAGCAGTCCCCCGGGGAGAAATGAAAAACTGTTTTTT CASSPPGRNEKLFF TRBV12-3*01,TRBV12-4*01 TRBJ1-4*01 6.0 192.0 CAATETSYDKVIF_CASSPPGRNEKLFF 34 5616 BZLF1-190-197 EBV 0.6 2156 NEG 354 5262 10 EBV BZLF1 RAKFKQLL effector memory T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-B*08:01 B2M MHCI -5526 chip0423_502114 7.66 8.61 Chip2 T1D_4 T1D TGTGCCAGCAATATCCGGGCAGGGGGCTCTTACGAGCAGTACTTC CASNIRAGGSYEQYF TRBV28*01 TRBJ2-7*01 20.0 844.0 _CASNIRAGGSYEQYF 2 14493 EBV-LMP1-1 EBV 0.47 237 NEG 369 14124 8 EBV LMP1 YLLEMLWRL effector memory T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*02:01 B2M MHCI -5527 chip0423_18166 13.76 7.8 Chip2 T1D_6 T1D TGCATCCTCCCACTTGCTGGTGGTACTAGCTATGGAAAGCTGACATTT CILPLAGGTSYGKLTF TRAV26-2*01 TRAJ52*01 41.0 1550.0 TGTGCCAGCAGCTTGGGACAGGCCTACGAGCAGTACTTC CASSLGQAYEQYF TRBV7-8*01 TRBJ2-7*01 36.0 1687.0 CILPLAGGTSYGKLTF_CASSLGQAYEQYF 308 3435 EBNA3A-193-201 EBV 0.91 1022 NEG 317 3118 10 EBV EBNA3A FLRGRAYGL effector memory T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-B*08:01 B2M MHCI -5528 chip0423_875719 15.72 9.05 Chip2 T1D_5 T1D TGTGCAATGAGGGCCATTGAGGGGGCAAACAACCTCTTCTTT CAMRAIEGANNLFF TRAV14/DV4*01 TRAJ36*01 36.0 1999.0 TGTGCCAGCAGCTTAGTCGAAATTTTATATGGCTACACCTTC CASSLVEILYGYTF TRBV7-9*01 TRBJ1-2*01 25.0 1048.0 CAMRAIEGANNLFF_CASSLVEILYGYTF 1 6290 BZLF1-190-197 EBV 0.5 2156 BZLF1-190-197 329 5961 12 EBV BZLF1 RAKFKQLL effector T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-B*08:01 B2M MHCI -5529 chip0423_598974 8.24 11.75 Chip2 T1D_5 T1D CGTGCCAGCCAACTAGCGGGAGGCACCGGGGAGCTGTTTTTT RASQLAGGTGELFF TRBV24-1*01 TRBJ2-2*01 20.0 1143.0 _RASQLAGGTGELFF 1 5862 BZLF1-190-197 EBV 0.62 2156 NEG 303 5559 7 EBV BZLF1 RAKFKQLL transitional T cells between effector and memory populations PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-B*08:01 B2M MHCI -5530 chip0423_636710 13.62 6.92 Chip2 T1D_5 T1D TGTGCAGCAACGGAAACCTCCTACGACAAGATGATATTT CAATETSYDKMIF TRAV13-1*01 TRAJ50*01 16.0 1284.0 TGTGCCAGCAGCCCTCTTGGGAGCAATGAAAAACTGTTTTTT CASSPLGSNEKLFF TRBV7-9*01 TRBJ1-4*01 23.0 885.0 CAATETSYDKMIF_CASSPLGSNEKLFF 1 4198 BZLF1-190-197 EBV 1.0 2156 NEG 284 3914 10 EBV BZLF1 RAKFKQLL effector memory T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-B*08:01 B2M MHCI -5531 chip0423_410267 15.97 9.39 Chip2 T1D_5 T1D TGTGCCACCAGTGAAATGGGGGGATCTGAAGCCTTCTTT CATSEMGGSEAFF TRAV17*01 TRAJ40*01 2.0 7.0 TGTGCCACCAGTGAAATGGGGGGATCTGAAGCTTTCTTT CATSEMGGSEAFF TRBV24-1*01 TRBJ1-1*01 52.0 2923.0 CATSEMGGSEAFF_CATSEMGGSEAFF 1 4351 BZLF1-190-197 EBV 0.54 2156 NEG 373 3978 12 EBV BZLF1 RAKFKQLL effector T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-B*08:01 B2M MHCI -5532 chip0423_7282 10.26 6.63 Chip2 T1D_4 T1D TGTGCTGTCAATTCAGGAAACACACCTCTTGTCTTT CAVNSGNTPLVF TRAV1-2*01 TRAJ29*01 16.0 1428.0 TGTGCCAGCAGCCAAGTCAACAACCCGGGGGATGGCTACACCTTC CASSQVNNPGDGYTF TRBV14*01 TRBJ1-2*01 14.0 420.0 CAVNSGNTPLVF_CASSQVNNPGDGYTF 31 8044 EBNA3A-158-166 EBV 0.72 444 EBNA3A-158-166 364 7680 10 EBV EBNA3A QAKWRLQTL effector memory T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-B*08:01 B2M MHCI -5533 chip0423_440377 10.08 7.08 Chip2 T1D_4 T1D TGCAGTGCTAGAGACAGGGTAGGAAACACCATATATTTT CSARDRVGNTIYF TRBV20-1*01 TRBJ1-3*01 11.0 357.0 _CSARDRVGNTIYF 1 5485 EBV-BLMF1 EBV 0.47 2531 EBV-BLMF1 304 5181 10 EBV BLMF1 GLCTLVAML effector memory T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*02:01 B2M MHCI -5534 chip0423_119614 8.32 7.89 Chip2 tet_neg TGTCCTTGCATGATACCCGTATACCCAGGAACTCTCATCTTT CPCMIPVYPGTLIF TRAV38-1*01 TRAJ42*01 5.0 300.0 TGTGCCAGCAGTGGATCCCGAACCTACGAGCAGTACTTC CASSGSRTYEQYF TRBV2*01 TRBJ2-7*01 64.0 3936.0 CPCMIPVYPGTLIF_CASSGSRTYEQYF 1 8045 EBV-LMP2A EBV 0.42 700 NEG 290 7755 8 EBV LMP2A CLGGLLTMV effector memory T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*02:01 B2M MHCI -5535 chip0423_552537 14.06 7.13 Chip2 T1D_5 T1D TGTGCAATGAGAGAGGGCGGGGGTGGAGGCTTCACGACTATCTGT CAMREGGGGGFTTIC TRAV14/DV4*01 TRAJ9*01 56.0 2133.0 TGTGCCAGCAGCTCCGGACTAGCGGGGGGCTCTCACACCGGGGAGCTGTTTTTT CASSSGLAGGSHTGELFF TRBV11-1*01 TRBJ2-2*01 43.0 1388.0 CAMREGGGGGFTTIC_CASSSGLAGGSHTGELFF 1 6127 BZLF1-190-197 EBV 0.71 2156 NEG 340 5787 10 EBV BZLF1 RAKFKQLL effector memory T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-B*08:01 B2M MHCI -5536 chip0423_475447 -1.2 6.77 Chip2 T1D_6 T1D TGTGCCTTTAGAAATGGAGGAAGCCAAGGAAATCTCATCTTT CAFRNGGSQGNLIF TRAV24*01 TRAJ42*01 40.0 1930.0 TGTGCCGTGAACATGAGAGGGGACAAGATCATCTTT CAVNMRGDKIIF TRAV12-2*01 TRAJ30*01 33.0 2970.0 0.35 TGTGCCACCAGTGATTTAGCGGGGGGAACAGATACGCAGTATTTT CATSDLAGGTDTQYF TRBV24-1*01 TRBJ2-3*01 20.0 814.0 CAFRNGGSQGNLIF_CATSDLAGGTDTQYF 1 10309 PGT-178 PGT 0.67 1480 PGT-178 301 10008 3 HomoSapiens PGT LLAGIGTVPI Naive T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*02:01 B2M MHCI -5537 chip0423_200914 6.75 14.52 Chip2 T1D_6 T1D TGCGGCACAGAGACGGATAATAATGCAGGCAACATGCTCACCTTT CGTETDNNAGNMLTF TRAV30*01 TRAJ39*01 14.0 558.0 TGTGCCAGTAGTATATATAGCATCAATGAGCAGTTCTTC CASSIYSINEQFF TRBV19*01 TRBJ2-1*01 24.0 993.0 CGTETDNNAGNMLTF_CASSIYSINEQFF 3 3975 M1 FLU 0.5 1250 NEG 372 3603 7 InfluenzaA M1 GILGFVFTL transitional T cells between effector and memory populations PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*02:01 B2M MHCI -5538 chip0423_502473 11.16 6.69 Chip2 T1D_4 T1D TGTGTGGTGAGCGCATCAGGAGGAAGCTACATACCTACATTT CVVSASGGSYIPTF TRAV10*01 TRAJ6*01 45.0 2030.0 TGCGCCAGCAGCCCCACTGTGGGATTCGCCGGGGAGCTGTTTTTT CASSPTVGFAGELFF TRBV4-3*01 TRBJ2-2*01 102.0 5146.0 CVVSASGGSYIPTF_CASSPTVGFAGELFF 2 6617 EBNA3A-193-201 EBV 0.75 1022 NEG 343 6274 10 EBV EBNA3A FLRGRAYGL effector memory T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-B*08:01 B2M MHCI -5539 chip0423_253019 9.91 6.92 Chip2 tet_neg TGTGCTGTCGGTTCTGGAGACACTCCTCTTGTCTTT CAVGSGDTPLVF TRAV1-2*01 TRAJ29*01 12.0 419.0 TGTGCCAGCAGCCACGAACAGGGATGGGAGACCCAGTACTTC CASSHEQGWETQYF TRBV3-1*01 TRBJ2-5*01 80.0 2281.0 CAVGSGDTPLVF_CASSHEQGWETQYF 1 6632 EBNA3A-158-166 EBV 0.83 444 NEG 301 6331 10 EBV EBNA3A QAKWRLQTL effector memory T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-B*08:01 B2M MHCI -5540 chip0423_83161 8.09 7.98 Chip2 T1D_6 T1D TGTGCTGTGGGAGGACACAGCACCCTCACCTTT CAVGGHSTLTF TRAV21*01,TRAV12-1*01 TRAJ11*01 26.0 2851.0 TGCCTCGTGGGTTCCCTATAGGGTGCCAGACTCATGTTT CLVGSL*GARLMF TRAV4*01 TRAJ31*01 28.0 2034.0 0.42 TGCAGTGCTAGGAGGCGTCGACAGTTACGACCCCTCCACTTT CSARRRRQLRPLHF TRBV20-1*01 TRBJ1-6*01 2.0 54.0 CAVGGHSTLTF_CSARRRRQLRPLHF 1 17504 EBNA3A-158-166 EBV 0.4 444 NEG 308 17196 8 EBV EBNA3A QAKWRLQTL effector memory T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-B*08:01 B2M MHCI -5541 chip0423_615428 8.84 11.41 Chip2 T1D_4 T1D TGTGCAATGAGCGAGGACGGCTTT CAMSEDGF TRAV12-3*01 TRAJ37*01,TRAJ27*01 2.0 14.0 TGTGCCAGCAGTCCCGACGGATCCACCGGGGAGCTGTTTTTT CASSPDGSTGELFF TRBV12-3*01,TRBV12-4*01 TRBJ2-2*01 7.0 339.0 CAMSEDGF_CASSPDGSTGELFF 1 5254 BZLF1-190-197 EBV 0.45 2156 NEG 330 4924 9 EBV BZLF1 RAKFKQLL effector memory T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-B*08:01 B2M MHCI -5542 chip0423_789850 7.21 12.1 Chip2 T1D_6 T1D TGTGTTGTTATAGACTATGGTCAGAATTTTGTCTTT CVVIDYGQNFVF TRAV8-2*01 TRAJ26*01 1.0 13.0 TGTGCCAGCAGCGCCTGGGGGGGGGCGGACCCCACAGATACGCAGTATTTT CASSAWGGADPTDTQYF TRBV9*01 TRBJ2-3*01 27.0 1127.0 CVVIDYGQNFVF_CASSAWGGADPTDTQYF 4 6367 GFAP-LRL-8 GFAP 0.73 18 NEG 264 6103 7 HomoSapiens GFAP LRLRLDQL transitional T cells between effector and memory populations PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-B*08:01 B2M MHCI -5543 chip0423_334420 10.92 9.43 Chip2 T1D_6 T1D TGCATCCTCCCACTTGCTGGTGGTACTAGCTATGGAAAGCTGACATTT CILPLAGGTSYGKLTF TRAV26-2*01 TRAJ52*01 40.0 2074.0 TGTGCCAGCAGCTTGGGACAGGCCTACGAGCAGTACTTC CASSLGQAYEQYF TRBV7-8*01 TRBJ2-7*01 46.0 2701.0 CILPLAGGTSYGKLTF_CASSLGQAYEQYF 308 7755 EBNA3A-193-201 EBV 0.47 1022 NEG 312 7443 9 EBV EBNA3A FLRGRAYGL effector memory T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-B*08:01 B2M MHCI -5544 chip0423_819030 13.41 6.63 Chip2 T1D_6 T1D TGCAGCGCCGGCAGGGACGGGACTAATGAAAAACTGTTTTTT CSAGRDGTNEKLFF TRBV29-1*01 TRBJ1-4*01 60.0 3815.0 _CSAGRDGTNEKLFF 159 4704 EBV-BLMF1 EBV 0.42 2531 NEG 360 4344 10 EBV BLMF1 GLCTLVAML effector memory T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*02:01 B2M MHCI -5545 chip0423_721301 7.63 9.39 Chip2 T1D_6 T1D TGTGCTGTCTCTGGCAACACAGGCAAACTAATCTCT CAVSGNTGKLIS TRAV20*01 TRAJ37*01 21.0 1855.0 TGCAGTGCTAGAGATCAGGTTGGAAACACCATATATTTT CSARDQVGNTIYF TRBV20-1*01 TRBJ1-3*01 16.0 487.0 CAVSGNTGKLIS_CSARDQVGNTIYF 1 8983 INS-WMR-8 INS 0.65 17 INS-WMR-8 387 8596 7 HomoSapiens INS WMRLLPLL transitional T cells between effector and memory populations PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-B*08:01 B2M MHCI -5546 chip0423_577947 10.82 6.52 Chip2 T1D_6 T1D TGTGCTGTGCGAATTCTTCCTAACTTTGGAAATGAGAAATTAACCTTT CAVRILPNFGNEKLTF TRAV21*01 TRAJ48*01 90.0 3637.0 TGTGCCAGCACTTCGACAGAAACCGTCGATGGCTACACCTTC CASTSTETVDGYTF TRBV5-4*01 TRBJ1-2*01 82.0 3264.0 CAVRILPNFGNEKLTF_CASTSTETVDGYTF 1 9405 EBNA3A-158-166 EBV 0.42 444 EBNA3A-158-166 307 9098 10 EBV EBNA3A QAKWRLQTL effector memory T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-B*08:01 B2M MHCI -5547 chip0423_419543 14.48 10.06 Chip2 T1D_4 T1D TGCATCGTCAGAGAGGGCGGAGGTGCTGCCGGCCTCCCCTTT CIVREGGGAAGLPF TRAV26-1*01 TRAJ45*01 8.0 514.0 TGTGCCAGCAGCTTAGCGGTCGGAGAAGGGCCCCAGCATTTT CASSLAVGEGPQHF TRBV7-9*01 TRBJ1-5*01 125.0 5560.0 CIVREGGGAAGLPF_CASSLAVGEGPQHF 4 3655 BZLF1-190-197 EBV 0.91 2156 BZLF1-190-197 302 3353 12 EBV BZLF1 RAKFKQLL effector T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-B*08:01 B2M MHCI -5548 chip0423_600648 12.55 6.47 Chip2 T1D_4 T1D TGTGCCAGCAGCTTAGGGCAAGCCTACGAGCAGTACTTC CASSLGQAYEQYF TRBV7-8*01 TRBJ2-7*01 71.0 3830.0 _CASSLGQAYEQYF 175 5480 EBNA3A-193-201 EBV 0.65 1022 NEG 368 5112 10 EBV EBNA3A FLRGRAYGL effector memory T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-B*08:01 B2M MHCI -5549 chip0423_745128 9.44 7.84 Chip2 T1D_4 T1D TGTGCCAGCAGCTTAGCGGTCGGAGAAGGGCCCCAGCATTTT CASSLAVGEGPQHF TRBV7-9*01 TRBJ1-5*01 32.0 1426.0 _CASSLAVGEGPQHF 113 7522 BZLF1-190-197 EBV 0.97 2156 BZLF1-190-197 350 7172 8 EBV BZLF1 RAKFKQLL effector memory T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-B*08:01 B2M MHCI -5550 chip0423_748482 5.04 9.35 Chip2 T1D_4 T1D TGTGCTCTCACTACCTATGGTCAGAATTTTGTCTTT CALTTYGQNFVF TRAV38-1*01 TRAJ26*01 24.0 1796.0 TGCAGTGCCTCTCGTGACTCCTACGAGCAGTACTTC CSASRDSYEQYF TRBV20-1*01 TRBJ2-7*01 8.0 628.0 CALTTYGQNFVF_CSASRDSYEQYF 15 4923 EBV-LMP1-1 EBV 0.7 237 NEG 308 4615 6 EBV LMP1 YLLEMLWRL central memory T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*02:01 B2M MHCI -5551 chip0423_561357 11.78 6.55 Chip2 T1D_4 T1D TGTGCCAGCAGCCAAGTCAACAACCCGGGGGATGGCTACACCTTC CASSQVNNPGDGYTF TRBV14*01 TRBJ1-2*01 18.0 486.0 _CASSQVNNPGDGYTF 94 5128 EBNA3A-158-166 EBV 0.61 444 EBNA3A-158-166 309 4819 10 EBV EBNA3A QAKWRLQTL effector memory T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-B*08:01 B2M MHCI -5552 chip0423_564020 8.99 7.47 Chip2 T1D_5 T1D TGTGCAGCAGCGGAAACCTCCTACGACAAGGTGATATTT CAAAETSYDKVIF TRAV13-1*01 TRAJ50*01 22.0 2205.0 TGTGCCAGCAGCGCCTTGGGGCAGACACACACTGAAGCTTTCTTT CASSALGQTHTEAFF TRBV7-9*01 TRBJ1-1*01 38.0 1818.0 CAAAETSYDKVIF_CASSALGQTHTEAFF 2 10088 BZLF1-190-197 EBV 0.67 2156 BZLF1-190-197 300 9788 8 EBV BZLF1 RAKFKQLL effector memory T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-B*08:01 B2M MHCI -5553 chip0423_544441 11.18 6.2 Chip2 T1D_4 T1D TGTGCCAGCAGTCTACACAGGACACTACTCTCTGGAAACACCATATATTTT CASSLHRTLLSGNTIYF TRBV28*01 TRBJ1-3*01 52.0 1525.0 _CASSLHRTLLSGNTIYF 2 7910 EBNA3A-158-166 EBV 1.0 444 EBNA3A-158-166 353 7557 10 EBV EBNA3A QAKWRLQTL effector memory T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-B*08:01 B2M MHCI -5554 chip0423_479359 8.28 7.91 Chip2 T1D_4 T1D TGTGCAATGAGAGAGGGCAGAGATGACAAGATCATCTTT CAMREGRDDKIIF TRAV14/DV4*01 TRAJ30*01 2.0 64.0 TGTGCCAGCAGCTTAACGGTTCTGGCAGGTCCAAACACTGAAGCTTTCTTT CASSLTVLAGPNTEAFF TRBV7-3*01 TRBJ1-1*01 20.0 785.0 CAMREGRDDKIIF_CASSLTVLAGPNTEAFF 1 7357 BZLF1-190-197 EBV 0.47 2156 BZLF1-190-197 307 7050 8 EBV BZLF1 RAKFKQLL effector memory T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-B*08:01 B2M MHCI -5555 chip0423_444944 10.61 6.65 Chip2 T1D_4 T1D TGTGCAATGAGAGAGGGCGAGGATAGCAACTATCAGTTAATCTGG CAMREGEDSNYQLIW TRAV14/DV4*01 TRAJ33*01 24.0 794.0 TGTGCCAGCAGCCAGGAGGGACACCTAACTAACTATGGCTACACCTTC CASSQEGHLTNYGYTF TRBV4-2*01 TRBJ1-2*01 89.0 2739.0 CAMREGEDSNYQLIW_CASSQEGHLTNYGYTF 2 7441 EBV-BLMF1 EBV 0.57 2531 NEG 303 7138 10 EBV BLMF1 GLCTLVAML effector memory T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*02:01 B2M MHCI -5556 chip0423_225151 8.88 8.32 Chip2 T1D_6 T1D TGTGCAGCAAGCAAGATAGAGGAGGAGGTGCTGACGGACTCACCTTT CAASKIEga?GGADGLTF TRAV23/DV6*01 TRAJ45*01 45.0 2020.0 TGTGCCAGCAGCTTGGGACAGGCCTACGAGCAGTACTTC CASSLGQAYEQYF TRBV7-8*01 TRBJ2-7*01 24.0 1663.0 CAASKIEga?GGADGLTF_CASSLGQAYEQYF 8 8111 EBNA3A-193-201 EBV 0.56 1022 NEG 316 7795 8 EBV EBNA3A FLRGRAYGL effector memory T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-B*08:01 B2M MHCI -5557 chip0423_669313 14.04 7.16 Chip2 T1D_5 T1D TGTGCAGCTCAGGAAACCTCCTACGACAAGGTGATATTT CAAQETSYDKVIF TRAV13-1*01 TRAJ50*01 1.0 23.0 TGTGCCAGCACCCAGGTAGACAGACCCAACTATGGCTACACCTTC CASTQVDRPNYGYTF TRBV7-9*01 TRBJ1-2*01 78.0 3451.0 CAAQETSYDKVIF_CASTQVDRPNYGYTF 17 4872 BZLF1-190-197 EBV 0.5 2156 BZLF1-190-197 301 4571 10 EBV BZLF1 RAKFKQLL effector memory T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-B*08:01 B2M MHCI -5558 chip0423_647719 6.51 10.32 Chip2 T1D_6 T1D TGCGCCAGCAGTGACATTAGGGAGGGGCAGGGTGAAGCTTTCTTT CASSDIREGQGEAFF TRBV10-2*01 TRBJ1-1*01 58.0 2189.0 _CASSDIREGQGEAFF 37 9023 EBNA3A-158-166 EBV 0.74 444 EBNA3A-158-166 300 8723 6 EBV EBNA3A QAKWRLQTL central memory T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-B*08:01 B2M MHCI -5559 chip0423_469892 11.6 7.01 Chip2 T1D_4 T1D TGTGCTGTGCTCCAGGATAGCAACTATCAGTTAATCTGG CAVLQDSNYQLIW TRAV21*01,TRAV12-2*01 TRAJ33*01 53.0 2060.0 TGCGCCAGCAGTGATGACGGAATGAACACTGAAGCTTTCTTT CASSDDGMNTEAFF TRBV10-2*01 TRBJ1-1*01 128.0 3898.0 CAVLQDSNYQLIW_CASSDDGMNTEAFF 8 5574 EBV-LMP2A EBV 0.9 700 NEG 305 5269 10 EBV LMP2A CLGGLLTMV effector memory T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*02:01 B2M MHCI -5560 chip0423_225766 10.84 6.46 Chip2 T1D_4 T1D TGTGCCAGCAGTCCGCAGGGAGGGAACTATGGCTACACCTTC CASSPQGGNYGYTF TRBV6-1*01 TRBJ1-2*01 25.0 1206.0 _CASSPQGGNYGYTF 4 8984 EBV-LMP2-FLY EBV 0.67 355 NEG 355 8629 10 EBV LMP2 FLYALALLL effector memory T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*02:01 B2M MHCI -5561 chip0423_623412 9.58 7.25 Chip2 T1D_4 T1D TGCATCCTCAGAGCGGGAGGGGGTGCTGTCGGGCTCGCCTTT CILRAGGGAVGLAF TRAV26-1*01 TRAJ45*01 23.0 1665.0 TGTGCCAGCAGCTTAGCGGTCGGAGAAGGGCCCCAGCATTTT CASSLAVGEGPQHF TRBV7-9*01 TRBJ1-5*01 73.0 3572.0 CILRAGGGAVGLAF_CASSLAVGEGPQHF 1 5549 BZLF1-190-197 EBV 0.98 2156 BZLF1-190-197 293 5256 10 EBV BZLF1 RAKFKQLL effector memory T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-B*08:01 B2M MHCI -5562 chip0423_680833 10.94 6.65 Chip2 T1D_6 T1D TGCATTTTTCTTCTTGCTGGTGGTCCTCGCTACGGAGAGCTGACATTT CIFLLAGGPRYGELTF TRAV26-2*01 TRAJ52*01 6.0 472.0 TGTGCCAGCAGCTTGGGACAGGCCTACGAGCAGTACTTC CASSLGQAYEQYF TRBV7-8*01 TRBJ2-7*01 15.0 854.0 CIFLLAGGPRYGELTF_CASSLGQAYEQYF 1 6268 EBNA3A-193-201 EBV 0.9 1022 EBNA3A-193-201 295 5973 10 EBV EBNA3A FLRGRAYGL effector memory T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-B*08:01 B2M MHCI -5563 chip0423_625651 10.7 6.47 Chip2 T1D_4 T1D TGTGCCAGCAGCCAAGTCAACAACCCGGGGGATGGCTACACCTTC CASSQVNNPGDGYTF TRBV14*01 TRBJ1-2*01 31.0 900.0 _CASSQVNNPGDGYTF 94 10665 EBNA3A-158-166 EBV 0.79 444 EBNA3A-158-166 361 10304 10 EBV EBNA3A QAKWRLQTL effector memory T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-B*08:01 B2M MHCI -5564 chip0423_756763 5.03 9.55 Chip2 T1D_4 T1D TGTGCTGTCCCAGGAGGAAGCCAAGGAAATCTCATCTTT CAVPGGSQGNLIF TRAV8-3*01 TRAJ42*01 31.0 1984.0 TGTGCCAGCAGTTACTCAAGTACAGGGGAGTACTTC CASSYSSTGEYF TRBV6-2*01,TRBV6-3*01 TRBJ2-7*01 1.0 86.0 CAVPGGSQGNLIF_CASSYSSTGEYF 20 6033 EBV-LMP1-1 EBV 0.6 237 NEG 292 5741 6 EBV LMP1 YLLEMLWRL central memory T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*02:01 B2M MHCI -5565 chip0423_118050 14.67 8.78 Chip2 T1D_5 T1D TGTGCAGCAAGTGAAACCTCCTACGACAAGGTGATATTT CAASETSYDKVIF TRAV13-1*01 TRAJ50*01 31.0 1729.0 TGTGCCAGCAGCGCCTTGGGACACCCCAATCAGCCCCAGCATTTT CASSALGHPNQPQHF TRBV7-9*01 TRBJ1-5*01 17.0 333.0 CAASETSYDKVIF_CASSALGHPNQPQHF 1 6119 BZLF1-190-197 EBV 0.47 2156 NEG 327 5792 12 EBV BZLF1 RAKFKQLL effector T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-B*08:01 B2M MHCI -5566 chip0423_438512 5.66 9.19 Chip2 T1D_6 T1D TGCGCCAGCAGTGCCATTAGGGCGGGGCAGGGTGAAGCTTTCTTT CASSAIRAGQGEAFF TRBV10-2*01 TRBJ1-1*01 7.0 171.0 _CASSAIRAGQGEAFF 1 9707 EBNA3A-158-166 EBV 0.91 444 NEG 328 9379 6 EBV EBNA3A QAKWRLQTL central memory T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-B*08:01 B2M MHCI -5567 chip0423_608666 9.02 7.81 Chip2 T1D_4 T1D TGCAGTGCTAGAGATCGAGTAGGGAATGGCTACACCTTC CSARDRVGNGYTF TRBV20-1*01 TRBJ1-2*01 54.0 4178.0 _CSARDRVGNGYTF 6 7588 EBV-BLMF1 EBV 0.47 2531 NEG 350 7238 8 EBV BLMF1 GLCTLVAML effector memory T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*02:01 B2M MHCI -5568 chip0423_82356 9.9 7.04 Chip2 T1D_5 T1D TGTGCCAGCAGCTTACTGGGACAGCTGAACACTGAAGCTTTCTTT CASSLLGQLNTEAFF TRAV36/DV7*01 TRAJ40*01 4.0 10.0 TGTGCCAGCAGCTTACTGGGACAGCTGAACACTGAAGCTTTCTTT CASSLLGQLNTEAFF TRBV7-9*01 TRBJ1-1*01 124.0 4548.0 CASSLLGQLNTEAFF_CASSLLGQLNTEAFF 1 6264 BZLF1-190-197 EBV 0.73 2156 NEG 303 5961 10 EBV BZLF1 RAKFKQLL effector memory T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-B*08:01 B2M MHCI -5569 chip0423_505933 6.01 13.53 Chip2 T1D_6 T1D TGTGCTGTGAGAGACATCCATACTGGAGGCTTCAAAACTATCTTT CAVRDIHTGGFKTIF TRAV3*01 TRAJ9*01 92.0 2652.0 TGTGCCAGCAGCGCCAGGGATGACTACGACGAGCAGTACTTC CASSARDDYDEQYF TRBV9*01 TRBJ2-7*01 24.0 1781.0 CAVRDIHTGGFKTIF_CASSARDDYDEQYF 2 6880 M1 FLU 0.86 1250 M1 310 6570 7 InfluenzaA M1 GILGFVFTL transitional T cells between effector and memory populations PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*02:01 B2M MHCI -5570 chip0423_287081 0.01 6.62 Chip2 tet_neg TGTGCTTATCCCCCCGCTGGTGGTACTCGCTATGGCGAGCTGACATTT CAYPPAGGTRYGELTF TRAV38-2/DV8*01 TRAJ52*01 40.0 1301.0 TGTGCCAGCAGCGTAGAGACAGGGAGGAACTCCGAGCAGTACTTC CASSVETGRNSEQYF TRBV9*01 TRBJ2-7*01 74.0 3240.0 CAYPPAGGTRYGELTF_CASSVETGRNSEQYF 1 10761 G6PC2-NLI-8 IGRP 0.59 32 NEG 288 10473 3 HomoSapiens G6PC2 NLIFKWIL Naive T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-B*08:01 B2M MHCI -5571 chip0423_662407 8.64 7.68 Chip2 tet_neg TGTGCAGCAAGGATTGGAGGATACAGCACCCTCACCTTT CAARIGGYSTLTF TRAV13-1*01 TRAJ11*01 32.0 1800.0 TGTGCTGTGGAGGATCGTAAGGTTTCAGATGGCCAGAAGCTGCTTTTT CAVEDRKVSDGQKLLF TRAV2*01 TRAJ16*01 26.0 921.0 0.37 TGTGCCAGCAGCCAAGTCAACAACCCGGGGGATGGCTACACCTTC CASSQVNNPGDGYTF TRBV14*01 TRBJ1-2*01 10.0 232.0 CAARIGGYSTLTF_CASSQVNNPGDGYTF 1 7304 EBNA3A-158-166 EBV 0.69 444 EBNA3A-158-166 275 7029 8 EBV EBNA3A QAKWRLQTL effector memory T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-B*08:01 B2M MHCI -5572 chip0423_679449 14.57 10.27 Chip2 T1D_4 T1D TGTGCATCTAATACCGGCACTGCCAGTAAACTCACCTTT CASNTGTASKLTF TRAV29/DV5*01 TRAJ44*01 14.0 1443.0 CASNTGTASKLTF_ 2 3802 EBV-BRLF1 EBV 0.88 1264 NEG 281 3521 12 EBV BRLF1 YVLDHLIVV effector T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*02:01 B2M MHCI -5573 chip0423_270336 12.97 6.33 Chip2 T1D_4 T1D TGCATCCTGCCTCTTGCTGGTGGTCCTCGCTATGGACAGCTGACATTT CILPLAGGPRYGQLTF TRAV26-2*01 TRAJ52*01 9.0 254.0 TGTGCCAGCAGCTTAGGGCAAGCCTACGAGCAGTACTTC CASSLGQAYEQYF TRBV7-8*01 TRBJ2-7*01 71.0 2485.0 CILPLAGGPRYGQLTF_CASSLGQAYEQYF 1 7100 EBNA3A-193-201 EBV 0.41 1022 NEG 331 6769 10 EBV EBNA3A FLRGRAYGL effector memory T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-B*08:01 B2M MHCI -5574 chip0423_789420 12.21 6.28 Chip2 T1D_4 T1D TCTGCTGTGCGTGCTGGGGCAGGCGCCCCGCAGCTGGTCTTT SAVRAGAGAPQLVF TRAV8-6*01 TRAJ54*01 6.0 207.0 SAVRAGAGAPQLVF_ 1 10883 BZLF1-190-197 EBV 0.74 2156 BZLF1-190-197 348 10535 10 EBV BZLF1 RAKFKQLL effector memory T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-B*08:01 B2M MHCI -5575 chip0423_585202 11.32 11.2 Chip2 T1D_4 T1D TGCATCGTCAGAGAGGGAGGAGGTGCTGACGGCCTCACCTTT CIVREGGGADGLTF TRAV26-1*01 TRAJ45*01 4.0 150.0 TGTGCCAGCAGCTTAGCGGTCGGAGAAGGGCCCCAGCATTTT CASSLAVGEGPQHF TRBV7-9*01 TRBJ1-5*01 51.0 2266.0 CIVREGGGADGLTF_CASSLAVGEGPQHF 68 3763 BZLF1-190-197 EBV 0.93 2156 BZLF1-190-197 291 3472 9 EBV BZLF1 RAKFKQLL effector memory T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-B*08:01 B2M MHCI -5576 chip0423_126579 10.35 6.97 Chip2 T1D_6 T1D TGCATCCTCCCACTTGCTGGTGGTACTAGCTATGGAAAGCTGACATTT CILPLAGGTSYGKLTF TRAV26-2*01 TRAJ52*01 4.0 162.0 TGTGCCAGCAGCTTGGGACAGGCCTACGAGCAGTACTTC CASSLGQAYEQYF TRBV7-8*01 TRBJ2-7*01 6.0 373.0 CILPLAGGTSYGKLTF_CASSLGQAYEQYF 308 7048 EBNA3A-193-201 EBV 0.61 1022 NEG 355 6693 10 EBV EBNA3A FLRGRAYGL effector memory T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-B*08:01 B2M MHCI -5577 chip0423_836963 13.8 8.16 Chip2 T1D_4 T1D TGCATCGTCAGAGTCGGTGGTGACAGCTGGGGGGAATTGCAGTTT CIVRVGGDSWGELQF TRAV26-1*01 TRAJ24*01 32.0 2393.0 TGTGCCAGCAGTTCCCTGAACACTGAAGCTTTCTTT CASSSLNTEAFF TRBV27*01 TRBJ1-1*01 81.0 4609.0 CIVRVGGDSWGELQF_CASSSLNTEAFF 1 3447 BZLF1-190-197 EBV 0.71 2156 NEG 298 3149 10 EBV BZLF1 RAKFKQLL effector memory T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-B*08:01 B2M MHCI -5578 chip0423_742963 12.79 6.41 Chip2 T1D_6 T1D TGCGCCAGCAGCCAAGACTATGGTCGGGGTGGCTACACCTTC CASSQDYGRGGYTF TRBV4-1*01 TRBJ1-2*01 4.0 203.0 _CASSQDYGRGGYTF 4 4983 LMP2A-CPL EBV 0.83 44 LMP2A-CPL 333 4650 10 EBV LMP2A CPLSKILL effector memory T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-B*08:01 B2M MHCI -5579 chip0423_242517 9.17 7.44 Chip2 T1D_4 T1D TGCATCGTCAGAGAGGGAGGAGGTGCTGACGGACTCCCCTTT CIVREGGGADGLPF TRAV26-1*01 TRAJ45*01 45.0 2607.0 TGTGCCAGCAGCTTAGCGGTCGGAGAAGGGCCCCAGCATTTT CASSLAVGEGPQHF TRBV7-9*01 TRBJ1-5*01 180.0 7795.0 CIVREGGGADGLPF_CASSLAVGEGPQHF 21 9199 BZLF1-190-197 EBV 0.9 2156 BZLF1-190-197 350 8849 8 EBV BZLF1 RAKFKQLL effector memory T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-B*08:01 B2M MHCI -5580 chip0423_591031 10.06 9.84 Chip2 T1D_4 T1D TGTGCCAGCAGCTTAGCGGTCGGAGAAGGGCCCCAGCATTTT CASSLAVGEGPQHF TRBV7-9*01 TRBJ1-5*01 28.0 941.0 _CASSLAVGEGPQHF 113 5825 BZLF1-190-197 EBV 0.91 2156 BZLF1-190-197 345 5480 9 EBV BZLF1 RAKFKQLL effector memory T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-B*08:01 B2M MHCI -5581 chip0423_331348 4.97 10.88 Chip2 T1D_6 T1D TGTGTGGTGAGGACCCCATAGGATAATGCAGGCAACATGCTCACCTTT CVVRTP*DNAGNMLTF TRAV12-1*01 TRAJ39*01 2.0 84.0 TGTGCCAGCAGTGAATCCCCGGCCCCCGGGAATGAAAAACTGTTTTTT CASSESPAPGNEKLFF TRBV6-1*01 TRBJ1-4*01 54.0 1421.0 CVVRTP*DNAGNMLTF_CASSESPAPGNEKLFF 1 6730 IAPP-STN-9 IAPP 0.85 48 IAPP-STN-9 281 6449 6 HomoSapiens IAPP STNVGSNTY central memory T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*01:01 B2M MHCI -5582 chip0423_335120 5.31 9.28 Chip2 T1D_4 T1D _ 6746 5915 EBV-LMP1-1 EBV 0.83 237 EBV-LMP1-1 310 5605 6 EBV LMP1 YLLEMLWRL central memory T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*02:01 B2M MHCI -5583 chip0423_394653 10.0 6.68 Chip2 T1D_4 T1D TGTGCTGCAGGTGCTCTGGAGCCACTAGTCAGCTGCCATTT CAAGALga?ATSQLPF TRAV8-3*01 TRAJ56*01 3.0 160.0 TGTGCCGTCTGGAGGGACGGAGCCTACGAGCAGTACTTC CAVWRDGAYEQYF TRBV28*01 TRBJ2-7*01 61.0 3825.0 CAAGALga?ATSQLPF_CAVWRDGAYEQYF 1 12501 EBV-LMP1-1 EBV 0.69 237 NEG 300 12201 10 EBV LMP1 YLLEMLWRL effector memory T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*02:01 B2M MHCI -5584 chip0423_44125 10.56 6.68 Chip2 T1D_6 T1D _ 6746 9237 EBNA3A-158-166 EBV 0.83 444 NEG 339 8898 10 EBV EBNA3A QAKWRLQTL effector memory T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-B*08:01 B2M MHCI -5585 chip0423_571318 12.51 6.35 Chip2 T1D_6 T1D TGTGCCAGCAGCTTGGGACAGGCCTACGAGCAGTACTTC CASSLGQAYEQYF TRBV7-8*01 TRBJ2-7*01 25.0 1308.0 _CASSLGQAYEQYF 175 6967 EBNA3A-193-201 EBV 0.71 1022 EBNA3A-193-201 338 6629 10 EBV EBNA3A FLRGRAYGL effector memory T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-B*08:01 B2M MHCI -5586 chip0423_357568 12.24 6.34 Chip2 T1D_4 T1D TGCATCGTCAGAGAGGGAGGAGGTGCTGGCGGGCTCGCTTTT CIVREGGGAGGLAF TRAV26-1*01 TRAJ45*01 9.0 573.0 TGTGCCAGCAGCTTAGCGGTCGGAGAAGGGCCCCAGCATTTT CASSLAVGEGPQHF TRBV7-9*01 TRBJ1-5*01 52.0 2213.0 CIVREGGGAGGLAF_CASSLAVGEGPQHF 1 5327 BZLF1-190-197 EBV 0.83 2156 BZLF1-190-197 338 4989 10 EBV BZLF1 RAKFKQLL effector memory T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-B*08:01 B2M MHCI -5587 chip0423_709388 16.61 11.22 Chip2 T1D_6 T1D TGTGCAGCTAATTATGGAGGAAGCCAAGGAAATCTCATCTTT CAANYGGSQGNLIF TRAV25*01 TRAJ42*01 57.0 2698.0 CAANYGGSQGNLIF_ 3 3137 M1 FLU 0.59 1250 NEG 297 2840 12 InfluenzaA M1 GILGFVFTL effector T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*02:01 B2M MHCI -5588 chip0423_119253 9.88 7.06 Chip2 T1D_4 T1D TGTGCCAGCAGCTTAGCGGTCGGAGAAGGGCCCCAGCATTTT CASSLAVGEGPQHF TRBV7-9*01 TRBJ1-5*01 52.0 1775.0 _CASSLAVGEGPQHF 113 6153 BZLF1-190-197 EBV 0.95 2156 BZLF1-190-197 310 5843 10 EBV BZLF1 RAKFKQLL effector memory T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-B*08:01 B2M MHCI -5589 chip0423_94929 11.57 6.4 Chip2 T1D_4 T1D TGTGCCAGCAGTAGTCTAGGGGGCTACTATGGCTACACCTTC CASSSLGGYYGYTF TRBV6-1*01 TRBJ1-2*01 9.0 288.0 _CASSSLGGYYGYTF 1 9396 EBV-LMP2-FLY EBV 0.47 355 NEG 291 9105 6 EBV LMP2 FLYALALLL central memory T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*02:01 B2M MHCI -5590 chip0423_107646 10.81 7.26 Chip2 T1D_4 T1D TGTTCTGTCCCTTCAGGTAACACCCCTCTTGTCTTT CSVPSGNTPLVF TRAV1-2*01 TRAJ29*01 10.0 477.0 TGTGCCAGCAGCCAAGTCAACAACCCGGGGGATGGCTACACCTTC CASSQVNNPGDGYTF TRBV14*01 TRBJ1-2*01 26.0 771.0 CSVPSGNTPLVF_CASSQVNNPGDGYTF 1 6113 EBNA3A-158-166 EBV 0.5 444 NEG 287 5826 10 EBV EBNA3A QAKWRLQTL effector memory T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-B*08:01 B2M MHCI -5591 chip0423_585018 12.02 7.08 Chip2 T1D_4 T1D TGTGCTGTGCTCCAGGATAGCAACTATCAGTTAATCTGG CAVLQDSNYQLIW TRAV12-2*01,TRAV21*01 TRAJ33*01 50.0 2768.0 TGCGCCAGCAGTGATGACGGAATGAACACTGAAGCTTTCTTT CASSDDGMNTEAFF TRBV10-2*01 TRBJ1-1*01 73.0 2753.0 CAVLQDSNYQLIW_CASSDDGMNTEAFF 8 7182 EBV-LMP2A EBV 0.86 700 EBV-LMP2A 306 6876 10 EBV LMP2A CLGGLLTMV effector memory T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*02:01 B2M MHCI -5592 chip0423_627777 8.69 8.73 Chip2 T1D_5 T1D TGTGCAGCAACGGAAACCTCCTACGACAAGGTGATATTT CAATETSYDKVIF TRAV13-1*01 TRAJ50*01 21.0 1703.0 TGCAGCGTTGGGGGGAACACTGAAGCTTTCTTT CSVGGNTEAFF TRBV29-1*01 TRBJ1-1*01 60.0 4858.0 CAATETSYDKVIF_CSVGGNTEAFF 1 7021 BZLF1-190-197 EBV 0.47 2156 BZLF1-190-197 269 6752 8 EBV BZLF1 RAKFKQLL effector memory T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-B*08:01 B2M MHCI -5593 chip0423_21031 10.74 8.04 Chip2 T1D_4 T1D TGCATCCTGCCTCTTGCTGGTGGTACTAGCTATGGAAAGCTGACATTT CILPLAGGTSYGKLTF TRAV26-2*01 TRAJ52*01 1.0 41.0 TGTGCCAGCAGCTTAGGGCAAGCCTACGAGCAGTACTTC CASSLGQAYEQYF TRBV7-8*01 TRBJ2-7*01 43.0 2176.0 CILPLAGGTSYGKLTF_CASSLGQAYEQYF 308 5441 EBNA3A-193-201 EBV 0.45 1022 NEG 289 5152 10 EBV EBNA3A FLRGRAYGL effector memory T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-B*08:01 B2M MHCI -5594 chip0423_706039 15.97 9.84 Chip2 T1D_4 T1D _ 6746 3713 EBV-BRLF1 EBV 0.56 1264 EBV-BRLF1 280 3433 12 EBV BRLF1 YVLDHLIVV effector T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*02:01 B2M MHCI -5595 chip0423_790310 13.33 6.63 Chip2 T1D_5 T1D TGTGCAGAGAGGGAGACCTCCTACGACAAGGTGATATTT CAERETSYDKVIF TRAV13-2*01 TRAJ50*01 43.0 4092.0 TGTGCCAGCAGTTTATTGAGCTCCTATAATTCACCCCTCCACTTT CASSLLSSYNSPLHF TRBV12-3*01,TRBV12-4*01 TRBJ1-6*01 23.0 1163.0 CAERETSYDKVIF_CASSLLSSYNSPLHF 1 4602 BZLF1-190-197 EBV 0.45 2156 NEG 342 4260 10 EBV BZLF1 RAKFKQLL effector memory T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-B*08:01 B2M MHCI -5596 chip0423_324744 6.62 14.6 Chip2 T1D_6 T1D TGTGCCAGTAGTATCAGGTCCTCCTACGAGCAGTACTTC CASSIRSSYEQYF TRBV19*01 TRBJ2-7*01 13.0 781.0 _CASSIRSSYEQYF 36 4159 M1 FLU 0.57 1250 NEG 295 3864 7 InfluenzaA M1 GILGFVFTL transitional T cells between effector and memory populations PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*02:01 B2M MHCI -5597 chip0423_792180 15.32 10.33 Chip2 T1D_5 T1D TGTGCCAGCAGCTTAGTACAGGGCTACGAGCAGTACTTC CASSLVQGYEQYF TRBV7-9*01 TRBJ2-7*01 40.0 1394.0 _CASSLVQGYEQYF 6 3959 BZLF1-190-197 EBV 0.5 2156 NEG 277 3682 12 EBV BZLF1 RAKFKQLL effector T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-B*08:01 B2M MHCI -5598 chip0423_664254 5.94 9.37 Chip2 T1D_4 T1D TGCAGTGCCTCTCGTGACTCCTACGAGCAGTACTTC CSASRDSYEQYF TRBV20-1*01 TRBJ2-7*01 21.0 1472.0 _CSASRDSYEQYF 7 8381 EBV-LMP1-1 EBV 0.81 237 NEG 307 8074 6 EBV LMP1 YLLEMLWRL central memory T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*02:01 B2M MHCI -5599 chip0423_770487 13.17 6.53 Chip2 T1D_6 T1D TGCATCCTCCCACTTGCTGGTGGTACTAGCTATGGAAAGCTGACATTT CILPLAGGTSYGKLTF TRAV26-2*01 TRAJ52*01 1.0 149.0 TGTGCCAGCAGCTTGGGACAGGCCTACGAGCAGTACTTC CASSLGQAYEQYF TRBV7-8*01 TRBJ2-7*01 24.0 1206.0 CILPLAGGTSYGKLTF_CASSLGQAYEQYF 308 6141 EBNA3A-193-201 EBV 0.64 1022 EBNA3A-193-201 317 5824 10 EBV EBNA3A FLRGRAYGL effector memory T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-B*08:01 B2M MHCI -5600 chip0423_874033 11.21 10.98 Chip2 T1D_4 T1D TGTGCTGTCAATTCAGGAAACACACCTCTTGTCTTT CAVNSGNTPLVF TRAV1-2*01 TRAJ29*01 13.0 1447.0 TGTGCCAGCAGCCAAGTCAACAACCCGGGGGATGGCTACACCTTC CASSQVNNPGDGYTF TRBV14*01 TRBJ1-2*01 14.0 319.0 CAVNSGNTPLVF_CASSQVNNPGDGYTF 31 4441 EBNA3A-158-166 EBV 0.48 444 NEG 311 4130 9 EBV EBNA3A QAKWRLQTL effector memory T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-B*08:01 B2M MHCI -5601 chip0423_557350 9.59 7.57 Chip2 T1D_6 T1D TGCAGCGCCGGCAGGGACGGGACTAATGAAAAACTGTTTTTT CSAGRDGTNEKLFF TRBV29-1*01 TRBJ1-4*01 165.0 9418.0 _CSAGRDGTNEKLFF 159 6020 EBV-BLMF1 EBV 0.67 2531 NEG 304 5716 8 EBV BLMF1 GLCTLVAML effector memory T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*02:01 B2M MHCI -5602 chip0423_437889 9.81 7.32 Chip2 T1D_4 T1D TGTCCTGTGTTGGACACGACCTGGACTGCCACGATCCTCTTT CPVLDTTWTATILF TRAV3*01 TRAJ30*01 14.0 1718.0 TGTGCCAGCAGCTTAGGAGGGGGAGAGGGGGCCAGTGAGCAGTTCTTC CASSLGGGEGASEQFF TRBV7-6*01 TRBJ2-1*01 39.0 2074.0 CPVLDTTWTATILF_CASSLGGGEGASEQFF 1 5743 EBNA3A-193-201 EBV 0.69 1022 NEG 282 5461 10 EBV EBNA3A FLRGRAYGL effector memory T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-B*08:01 B2M MHCI -5603 chip0423_393358 9.71 7.26 Chip2 T1D_4 T1D TGTGTGGTGAACATCGACAATGCCAGACTCATGTTT CVVNIDNARLMF TRAV12-1*01 TRAJ31*01 29.0 1726.0 TGCAGCGTTGGGCAGGGGCCATACGAGCAGTACTTC CSVGQGPYEQYF TRBV29-1*01 TRBJ2-7*01 183.0 12029.0 CVVNIDNARLMF_CSVGQGPYEQYF 1 6026 BZLF1-190-197 EBV 0.5 2156 NEG 282 5744 10 EBV BZLF1 RAKFKQLL effector memory T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-B*08:01 B2M MHCI -5604 chip0423_456221 11.3 6.86 Chip2 T1D_4 T1D TGTGCTCTCGTGAATTATGGAGGAAGCCAAGGAAATCTCATCTTT CALVNYGGSQGNLIF TRAV19*01 TRAJ42*01 60.0 1937.0 TGTGCCGTCTGGAGGGACGGAGCCTACGAGCAGTACTTC CAVWRDGAYEQYF TRBV28*01 TRBJ2-7*01 56.0 4787.0 CALVNYGGSQGNLIF_CAVWRDGAYEQYF 13 7739 EBV-LMP1-1 EBV 0.46 237 NEG 287 7452 6 EBV LMP1 YLLEMLWRL central memory T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*02:01 B2M MHCI -5605 chip0423_45493 10.29 6.8 Chip2 T1D_6 T1D TGCATCGCCGTTACCTCGTCCCGGTATCCGGTTCTTTTTT CIAVTStc??ccGIRFFF TRAV26-1*01 TRAJ49*01 2.0 44.0 TGCAGCGCCGGCAGGGACGGGACTAATGAAAAACTGTTTTTT CSAGRDGTNEKLFF TRBV29-1*01 TRBJ1-4*01 109.0 5737.0 CIAVTStc??ccGIRFFF_CSAGRDGTNEKLFF 1 6917 EBV-BLMF1 EBV 0.64 2531 NEG 327 6590 10 EBV BLMF1 GLCTLVAML effector memory T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*02:01 B2M MHCI -5606 chip0423_772321 11.46 7.18 Chip2 T1D_4 T1D TGCATCGTCAGCCCGTCACCACCGACTGGTCAGCATTTTGTCTTT CIVSPSPPTGQHFVF TRAV26-1*01 TRAJ26*01 49.0 2081.0 TGTGCCAGTAGAGCTTTACAGGGGTGGAATTCACCCCTCCACTTT CASRALQGWNSPLHF TRBV19*01 TRBJ1-6*01 11.0 270.0 CIVSPSPPTGQHFVF_CASRALQGWNSPLHF 1 6216 EBV-BRLF1 EBV 0.49 1264 EBV-BRLF1 289 5927 10 EBV BRLF1 YVLDHLIVV effector memory T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*02:01 B2M MHCI -5607 chip0423_537482 11.91 6.79 Chip2 T1D_4 T1D TGTGCTGGGCAGGTTGCTGGCAACAACCGTAAGCTGATTTGG CAGQVAGNNRKLIW TRAV17*01 TRAJ38*01 48.0 2051.0 TGTGCCAGCAGCCCCCGGGGAGGGCAAGAGACCCAGTACTTC CASSPRGGQETQYF TRBV7-3*01 TRBJ2-5*01 37.0 3204.0 CAGQVAGNNRKLIW_CASSPRGGQETQYF 1 6001 BZLF1-190-197 EBV 0.44 2156 NEG 314 5687 10 EBV BZLF1 RAKFKQLL effector memory T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-B*08:01 B2M MHCI -5608 chip0423_80217 12.51 6.89 Chip2 T1D_4 T1D TGTGCTGTGAGTGATGGAGAAGGAGCCCAGAAGCTGGTATTT CAVSDGEGAQKLVF TRAV8-6*01 TRAJ54*01 40.0 1990.0 TGTGCCAGCAGCTTAACGGTTCTGGCAGGTCCAAACACTGAAGCTTTCTTT CASSLTVLAGPNTEAFF TRBV7-3*01 TRBJ1-1*01 59.0 1645.0 CAVSDGEGAQKLVF_CASSLTVLAGPNTEAFF 44 5574 BZLF1-190-197 EBV 0.92 2156 BZLF1-190-197 295 5279 10 EBV BZLF1 RAKFKQLL effector memory T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-B*08:01 B2M MHCI -5609 chip0423_186734 10.79 6.55 Chip2 T1D_4 T1D TGCTTGGTAACCCTCCGATTCCTTGTGGCTACCATAAGCTCATTTTT CLVTLRFct?CGYHKLIF TRAV12-1*01 TRAJ4*01 5.0 652.0 TGTGCCAGCAGTCTTCTAGCGGGGGGGCCGAGGGAGACCCAGTACTTC CASSLLAGGPRETQYF TRBV28*01 TRBJ2-5*01 74.0 3496.0 CLVTLRFct?CGYHKLIF_CASSLLAGGPRETQYF 1 9382 EBNA3A-158-166 EBV 0.74 444 EBNA3A-158-166 330 9052 10 EBV EBNA3A QAKWRLQTL effector memory T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-B*08:01 B2M MHCI -5610 chip0423_445141 12.12 6.33 Chip2 T1D_5 T1D TGTGCAGCAAGAGAGACCTCCTACGACAAGGTGATATTT CAARETSYDKVIF TRAV13-1*01 TRAJ50*01 38.0 2224.0 CAARETSYDKVIF_ 15 6420 BZLF1-190-197 EBV 0.59 2156 NEG 283 6137 10 EBV BZLF1 RAKFKQLL effector memory T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-B*08:01 B2M MHCI -5611 chip0423_877095 13.38 11.3 Chip2 T1D_5 T1D TGTGCAGCGGCGGAAACCTCCTACGACAAGGTGATATTT CAAAETSYDKVIF TRAV13-1*01 TRAJ50*01 13.0 726.0 TGTGCCAGCCAACTAGCGGGAGGCACCGGGGAGCTGTTTTTT CASQLAGGTGELFF TRBV24-1*01 TRBJ2-2*01 37.0 2272.0 CAAAETSYDKVIF_CASQLAGGTGELFF 131 3344 BZLF1-190-197 EBV 0.64 2156 NEG 318 3026 9 EBV BZLF1 RAKFKQLL effector memory T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-B*08:01 B2M MHCI -5612 chip0423_812605 11.2 6.4 Chip2 T1D_4 T1D TGTGCTCTGAGAAGCGGCGACTTCAACAAATTTTACTTT CALRSGDFNKFYF TRAV19*01 TRAJ21*01 10.0 762.0 TGTGCCAGCAGTTTACCTTTAGGGACAGGGGGCGAGATCACTGAAGCTTTCTTT CASSLPLGTGGEITEAFF TRBV28*01 TRBJ1-1*01 116.0 3840.0 CALRSGDFNKFYF_CASSLPLGTGGEITEAFF 1 9314 EBV-LMP1-2 EBV 0.79 41 EBV-LMP1-2 300 9014 6 EBV LMP1 YLQQNWWTL central memory T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*02:01 B2M MHCI -5613 chip0423_555790 8.19 9.36 Chip2 T1D_6 T1D TGCATCCTCCCACTTGCTGGTGGTACTAGCTATGGAAAGCTGACATTT CILPLAGGTSYGKLTF TRAV26-2*01 TRAJ52*01 32.0 1196.0 TGTGCCAGCAGCTTGGGACAGGCCTACGAGCAGTACTTC CASSLGQAYEQYF TRBV7-8*01 TRBJ2-7*01 41.0 2263.0 CILPLAGGTSYGKLTF_CASSLGQAYEQYF 308 9800 EBNA3A-193-201 EBV 0.84 1022 EBNA3A-193-201 310 9490 8 EBV EBNA3A FLRGRAYGL effector memory T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-B*08:01 B2M MHCI -5614 chip0423_294062 9.91 10.99 Chip2 T1D_4 T1D TGTGCCGTGAATGTGGACACCGGTAACCAGTTCTATTTT CAVNVDTGNQFYF TRAV8-1*01 TRAJ49*01 24.0 2059.0 TGCAGCGGACTAGCGGGAGCAGGTGAGCAGTTCTTC CSGLAGAGEQFF TRBV29-1*01 TRBJ2-1*01 35.0 2698.0 CAVNVDTGNQFYF_CSGLAGAGEQFF 4 4062 BZLF1-190-197 EBV 1.0 2156 NEG 254 3808 9 EBV BZLF1 RAKFKQLL effector memory T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-B*08:01 B2M MHCI -5615 chip0423_434954 13.34 7.07 Chip2 T1D_4 T1D TGTGCTGTCAATTCAGGAAACACACCTCTTGTCTTT CAVNSGNTPLVF TRAV1-2*01 TRAJ29*01 4.0 269.0 TGTGCCAGCAGCCAAGTCAACAACCCGGGGGATGGCTACACCTTC CASSQVNNPGDGYTF TRBV14*01 TRBJ1-2*01 6.0 199.0 CAVNSGNTPLVF_CASSQVNNPGDGYTF 31 5112 EBNA3A-158-166 EBV 0.58 444 NEG 323 4789 10 EBV EBNA3A QAKWRLQTL effector memory T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-B*08:01 B2M MHCI -5616 chip0423_750810 10.98 6.49 Chip2 T1D_4 T1D TGTGCCAGCAGCTTAGGGCAAGCCTACGAGCAGTACTTC CASSLGQAYEQYF TRBV7-8*01 TRBJ2-7*01 81.0 3907.0 _CASSLGQAYEQYF 175 8936 EBNA3A-193-201 EBV 0.81 1022 NEG 297 8639 10 EBV EBNA3A FLRGRAYGL effector memory T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-B*08:01 B2M MHCI -5617 chip0423_847015 12.28 6.58 Chip2 T1D_4 T1D TGTGCCGTGAGAGACACGACGTGGGCTGCCAAGATCATCTTT CAVRDTTWAAKIIF TRAV3*01 TRAJ30*01 79.0 3628.0 TGTGCCAGCAGCTTAGGAGGGGGAGAGGGGGCCAGTGAGCAGTTCTTC CASSLGGGEGASEQFF TRBV7-6*01 TRBJ2-1*01 34.0 2062.0 CAVRDTTWAAKIIF_CASSLGGGEGASEQFF 6 6970 EBNA3A-193-201 EBV 0.5 1022 NEG 307 6663 10 EBV EBNA3A FLRGRAYGL effector memory T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-B*08:01 B2M MHCI -5618 chip0423_44871 12.6 6.32 Chip2 T1D_4 T1D TGTGCTGTGGGTGTTGGAGAAGGAGCCCAGACGCTGGTATTT CAVGVGEGAQTLVF TRAV8-6*01 TRAJ54*01 77.0 3506.0 TGTGCCAGCAGCTTAACGGTTCTGGCAGGTCCAAACACTGAAGCTTTCTTT CASSLTVLAGPNTEAFF TRBV7-3*01 TRBJ1-1*01 42.0 1518.0 CAVGVGEGAQTLVF_CASSLTVLAGPNTEAFF 1 7170 BZLF1-190-197 EBV 0.52 2156 BZLF1-190-197 328 6842 10 EBV BZLF1 RAKFKQLL effector memory T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-B*08:01 B2M MHCI -5619 chip0423_492408 9.88 7.07 Chip2 T1D_4 T1D TGTGCAGCAAGTGAAGGGAATGAGAAATTAACCTTT CAASEGNEKLTF TRAV13-1*01 TRAJ48*01 25.0 1534.0 TGTGCCAGCAGCTTAAATGGACTAGATGAGCAGTACTTC CASSLNGLDEQYF TRBV7-3*01 TRBJ2-7*01 39.0 2103.0 CAASEGNEKLTF_CASSLNGLDEQYF 2 6762 BZLF1-190-197 EBV 0.85 2156 BZLF1-190-197 343 6419 10 EBV BZLF1 RAKFKQLL effector memory T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-B*08:01 B2M MHCI -5620 chip0423_568927 9.7 10.38 Chip2 T1D_4 T1D TGTGCCAGCAGTGAGTGGGAGCTGAACTATGGCTACACCTTC CASSEWELNYGYTF TRBV25-1*01 TRBJ1-2*01 33.0 1850.0 _CASSEWELNYGYTF 1 4735 EBV-BRLF1 EBV 0.67 1264 EBV-BRLF1 288 4447 9 EBV BRLF1 YVLDHLIVV effector memory T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*02:01 B2M MHCI -5621 chip0423_718812 8.61 7.65 Chip2 T1D_4 T1D TGTGCTCTGAGTGATTATGGTAACCAGTTCTATTTT CALSDYGNQFYF TRAV9-2*01 TRAJ49*01 40.0 3121.0 TGTGCCAGCAGTTCCCTAGCGGGGGTTAGGGAGCAGTACTTC CASSSLAGVREQYF TRBV27*01 TRBJ2-7*01 63.0 3230.0 CALSDYGNQFYF_CASSSLAGVREQYF 1 10447 EBNA3A-158-166 EBV 0.55 444 NEG 280 10167 8 EBV EBNA3A QAKWRLQTL effector memory T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-B*08:01 B2M MHCI -5622 chip0423_652547 8.96 10.77 Chip2 T1D_4 T1D TGTGCTGTGGGGGAGAACTATGGTCAGCATTTTGTCTTT CAVGENYGQHFVF TRAV21*01 TRAJ26*01 17.0 1145.0 TGTGCTGTGGGGAGAACTATGGTCAGAATTTTGTCTTT CAVGRTa?tGQNFVF TRAV21*01 TRAJ26*01 24.0 1725.0 0.49 TGCGCCAGCCTACCCACTCCACATTCGGACTCGGGCAATTCGAACACTGAAGCTTTCTTT CASLPTPHSDSGNSNTEAFF TRBV5-1*01 TRBJ1-1*01 3.0 52.0 CAVGENYGQHFVF_CASLPTPHSDSGNSNTEAFF 1 6098 BZLF1-190-197 EBV 0.56 2156 NEG 282 5816 9 EBV BZLF1 RAKFKQLL effector memory T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-B*08:01 B2M MHCI -5623 chip0423_306252 14.24 8.31 Chip2 T1D_4 T1D TGTGCTGTGAGTGATGGAGAAGGAGCCCAGAAGCTGGTATTT CAVSDGEGAQKLVF TRAV8-6*01 TRAJ54*01 79.0 3378.0 TGTGCCAGCAGCTTAACGGTTCTGGCAGGTCCAAACACTGAAGCTTTCTTT CASSLTVLAGPNTEAFF TRBV7-3*01 TRBJ1-1*01 43.0 1353.0 CAVSDGEGAQKLVF_CASSLTVLAGPNTEAFF 44 4272 BZLF1-190-197 EBV 0.96 2156 BZLF1-190-197 285 3987 10 EBV BZLF1 RAKFKQLL effector memory T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-B*08:01 B2M MHCI -5624 chip0423_837901 -1.84 10.68 Chip2 T1D_4 T1D TGTGCAATGAGAGAGAGCATGGAATATGGAAACAAACTGGTCTTT CAMRESMEYGNKLVF TRAV14/DV4*01 TRAJ47*01 63.0 1685.0 TGTGCCAGCAGCTTACTTAGGGGCACAGATACGCAGTATTTT CASSLLRGTDTQYF TRBV27*01 TRBJ2-3*01 12.0 517.0 CAMRESMEYGNKLVF_CASSLLRGTDTQYF 1 4945 NP30-38 FLU 0.67 72 NEG 261 4684 3 InfluenzaA NP RPIIRPATL Naive T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-B*08:01 B2M MHCI -5625 chip0423_48483 12.16 6.39 Chip2 T1D_4 T1D TGTGCCAGCAGCTTAGTGGTTAGCCACGGGGAGCTGTTTTTT CASSLVVSHGELFF TRBV7-2*01 TRBJ2-2*01 96.0 4791.0 _CASSLVVSHGELFF 4 7609 BZLF1-190-197 EBV 0.71 2156 NEG 281 7328 10 EBV BZLF1 RAKFKQLL effector memory T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-B*08:01 B2M MHCI -5626 chip0423_719777 9.29 7.42 Chip2 T1D_4 T1D TGCATCGTCAGAGAGGGCGGCGGTGCTGACCGCCTCCCCTTT CIVREGGGADRLPF TRAV26-1*01 TRAJ45*01 9.0 546.0 TGTGCCAGCAGCTTAGCGGTCGGAGAAGGGCCCCAGCATTTT CASSLAVGEGPQHF TRBV7-9*01 TRBJ1-5*01 44.0 1122.0 CIVREGGGADRLPF_CASSLAVGEGPQHF 1 10190 BZLF1-190-197 EBV 0.83 2156 BZLF1-190-197 354 9836 8 EBV BZLF1 RAKFKQLL effector memory T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-B*08:01 B2M MHCI -5627 chip0423_662206 0.01 6.44 Chip2 T1D_5 T1D TGTGCCGTGAACTCCTACACTAACAATGACATGCGCTTT CAVNSYTNNDMRF TRAV12-2*01 TRAJ43*01 24.0 1538.0 TGCGCCAGCAGCTTGGCAAACAGGGAGGAAAAACTGTTTTTT CASSLANREEKLFF TRBV5-1*01 TRBJ1-4*01 54.0 1887.0 CAVNSYTNNDMRF_CASSLANREEKLFF 1 15914 INS-MAL-8 INS 0.41 38 INS-MAL-8 295 15619 3 HomoSapiens INS MALWMRLL Naive T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-B*08:01 B2M MHCI -5628 chip0423_180638 12.77 6.54 Chip2 T1D_5 T1D TGTGCCAGCAGCCCTCTTGGGAGCAATGAAAAACTGTTTTTT CASSPLGSNEKLFF TRBV7-9*01 TRBJ1-4*01 26.0 858.0 _CASSPLGSNEKLFF 20 3574 BZLF1-190-197 EBV 1.0 2156 NEG 321 3253 10 EBV BZLF1 RAKFKQLL effector memory T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-B*08:01 B2M MHCI -5629 chip0423_462665 14.95 9.88 Chip2 T1D_6 T1D TGCATCCTCCCACTTGCTGGTGGTACTAGCTATGGAAAGCTGACATTT CILPLAGGTSYGKLTF TRAV26-2*01 TRAJ52*01 73.0 1545.0 TGTGCCAGCAGCTTGGGACAGGCCTACGAGCAGTACTTC CASSLGQAYEQYF TRBV7-8*01 TRBJ2-7*01 39.0 1478.0 CILPLAGGTSYGKLTF_CASSLGQAYEQYF 308 4816 EBNA3A-193-201 EBV 0.47 1022 EBNA3A-193-201 325 4491 12 EBV EBNA3A FLRGRAYGL effector T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-B*08:01 B2M MHCI -5630 chip0423_354166 12.5 6.46 Chip2 T1D_4 T1D TGTGCCGTGAGCAGAATACCGGCACTGCCAGTAAACTCACCTTT CAVSRIPg?cTASKLTF TRAV8-1*01 TRAJ44*01 1.0 13.0 TGTGCCAGCAGCCAAGGACAGGCCTACGAGCAGTACTTC CASSQGQAYEQYF TRBV7-8*01 TRBJ2-7*01 47.0 2373.0 CAVSRIPg?cTASKLTF_CASSQGQAYEQYF 1 6419 EBNA3A-193-201 EBV 0.89 1022 NEG 269 6150 10 EBV EBNA3A FLRGRAYGL effector memory T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-B*08:01 B2M MHCI -5631 chip0423_470232 11.87 8.01 Chip2 T1D_4 T1D TGTGCCAACAGCTTAGGAGGGGGAGAGGGGGCCAGTGAGCAGTTCTTC CANSLGGGEGASEQFF TRBV7-6*01 TRBJ2-1*01 23.0 1655.0 _CANSLGGGEGASEQFF 1 3895 EBNA3A-193-201 EBV 0.44 1022 NEG 298 3597 10 EBV EBNA3A FLRGRAYGL effector memory T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-B*08:01 B2M MHCI -5632 chip0423_456954 12.47 6.58 Chip2 T1D_4 T1D TGTGCCAGCAGCCAAGTCATCCCCCCGGGGGAGGGCTACACCTTC CASSQVIPPGEGYTF TRBV14*01 TRBJ1-2*01 6.0 87.0 _CASSQVIPPGEGYTF 1 4683 EBNA3A-158-166 EBV 0.83 444 NEG 297 4386 10 EBV EBNA3A QAKWRLQTL effector memory T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-B*08:01 B2M MHCI -5633 chip0423_138063 11.67 6.17 Chip2 T1D_4 T1D TGCATCGTCAGAGAGGGAGGAGGTGCTGACGGACTCCCCTTT CIVREGGGADGLPF TRAV26-1*01 TRAJ45*01 32.0 1971.0 TGCATCGTCAGAGTCGTGTGTACGGCACTGCCAGTAATCTCACCTTT CIVRVVCac?GTASNLTF TRAV26-1*01 TRAJ44*01 20.0 1417.0 0.29 TGTGCCAGCAGCTTAGCGGTCGGAGAAGGGCCCCAGCATTTT CASSLAVGEGPQHF TRBV7-9*01 TRBJ1-5*01 50.0 2353.0 CIVREGGGADGLPF_CASSLAVGEGPQHF 21 7579 BZLF1-190-197 EBV 0.73 2156 BZLF1-190-197 291 7288 10 EBV BZLF1 RAKFKQLL effector memory T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-B*08:01 B2M MHCI -5634 chip0423_835378 14.52 12.79 Chip2 T1D_4 T1D TGCATCGTCAGAGAGGGAGGAGGTGCTGACGGACTCACCTTT CIVREGGGADGLTF TRAV26-1*01 TRAJ45*01 61.0 3731.0 TGTGCCAGCAGCTTAGCGGTCGGAGAAGGGCCCCAGCATTTT CASSLAVGEGPQHF TRBV7-9*01 TRBJ1-5*01 70.0 2582.0 CIVREGGGADGLTF_CASSLAVGEGPQHF 68 3340 BZLF1-190-197 EBV 0.9 2156 BZLF1-190-197 280 3060 12 EBV BZLF1 RAKFKQLL effector T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-B*08:01 B2M MHCI -5635 chip0423_710186 7.32 11.42 Chip2 T1D_6 T1D TGCGCCAGCAGTGACATTAGGGAGGGGCAGGGTGAAGCTTTCTTT CASSDIREGQGEAFF TRBV10-2*01 TRBJ1-1*01 21.0 740.0 _CASSDIREGQGEAFF 37 8158 EBNA3A-158-166 EBV 0.5 444 NEG 259 7899 7 EBV EBNA3A QAKWRLQTL transitional T cells between effector and memory populations PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-B*08:01 B2M MHCI -5636 chip0423_29891 13.94 7.45 Chip2 T1D_6 T1D TGCATCCTCCCACTTGCTGGTGGTACTAGCTATGGAAAGCCGACATTT CILPLAGGTSYGKPTF TRAV26-2*01 TRAJ52*01 21.0 1163.0 TGTGCCAGCAGCTTGGGACAGGCCTACGAGCAGTACTTC CASSLGQAYEQYF TRBV7-8*01 TRBJ2-7*01 29.0 1215.0 CILPLAGGTSYGKPTF_CASSLGQAYEQYF 2 7295 EBNA3A-193-201 EBV 0.81 1022 EBNA3A-193-201 324 6971 10 EBV EBNA3A FLRGRAYGL effector memory T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-B*08:01 B2M MHCI -5637 chip0423_76303 14.1 8.85 Chip2 T1D_4 T1D TGCATCGTCAGAGAGGGAGGAGGTGCTGACGGACTCACCTTT CIVREGGGADGLTF TRAV26-1*01 TRAJ45*01 7.0 309.0 TGTGCCAGCAGCTTAGCGGTCGGAGAAGGGCCCCAGCATTTT CASSLAVGEGPQHF TRBV7-9*01 TRBJ1-5*01 14.0 423.0 CIVREGGGADGLTF_CASSLAVGEGPQHF 68 5074 BZLF1-190-197 EBV 0.9 2156 BZLF1-190-197 305 4769 10 EBV BZLF1 RAKFKQLL effector memory T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-B*08:01 B2M MHCI -5638 chip0423_385613 -0.27 6.49 Chip2 T1D_4 T1D TGTGCTGTGTCATCCTATGGTCAGAATTTTGTCTTT CAVSSYGQNFVF TRAV1-2*01 TRAJ26*01 21.0 1575.0 TGTGCCAGCAGTTTTTCACGCGGGAGGGCCGGGTACGAGCAGTACTTC CASSFSRGRAGYEQYF TRBV28*01 TRBJ2-7*01 61.0 3013.0 CAVSSYGQNFVF_CASSFSRGRAGYEQYF 1 10070 GAD2-MAA-10 GAD65 0.5 6 NEG 272 9798 3 HomoSapiens GAD2 MAALPRLIAF Naive T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-B*08:01 B2M MHCI -5639 chip0423_97292 8.25 7.9 Chip2 T1D_4 T1D TGCATCGTCTGCGGGGGCGGAGGTGCTGACGGACTGACCTTT CIVCGGGGADGLTF TRAV26-1*01 TRAJ45*01 25.0 1238.0 TGTGCCAGCAGCTTAGCGGTCGGAGAAGGGCCCCAGCATTTT CASSLAVGEGPQHF TRBV7-9*01 TRBJ1-5*01 11.0 463.0 CIVCGGGGADGLTF_CASSLAVGEGPQHF 1 8717 BZLF1-190-197 EBV 0.73 2156 BZLF1-190-197 325 8392 8 EBV BZLF1 RAKFKQLL effector memory T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-B*08:01 B2M MHCI -5640 chip0423_161438 -0.42 9.4 Chip2 T1D_5 T1D TGTGCTGTGCACATCTTCAACAAATTTTACTTT CAVHIFNKFYF TRAV20*01 TRAJ21*01 17.0 1293.0 TGTGCCAGCAGCCAAGTATCGGAGGACACTGAAGCTTTCTTT CASSQVSEDTEAFF TRBV4-2*01 TRBJ1-1*01 46.0 1425.0 CAVHIFNKFYF_CASSQVSEDTEAFF 1 6170 INS-GSH-9 INS 0.76 19 INS-GSH-9 222 5948 3 HomoSapiens INS GSHLVEALY Naive T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*01:01 B2M MHCI -5641 chip0423_612222 12.64 9.52 Chip2 T1D_6 T1D TGCATCCTCCCACTTGCTGGTGGTACTAGCTATGGAAAGCTGACATTT CILPLAGGTSYGKLTF TRAV26-2*01 TRAJ52*01 28.0 1175.0 TGTGCCAGCAGCTTGGGACAGGCCTACGAGCAGTACTTC CASSLGQAYEQYF TRBV7-8*01 TRBJ2-7*01 15.0 887.0 CILPLAGGTSYGKLTF_CASSLGQAYEQYF 308 5543 EBNA3A-193-201 EBV 0.75 1022 EBNA3A-193-201 242 5301 10 EBV EBNA3A FLRGRAYGL effector memory T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-B*08:01 B2M MHCI -5642 chip0423_647626 10.36 8.9 Chip2 T1D_4 T1D TGTGCCAGCAGCAGAATCCCGGGACAGGGGGCCCGACCGGATCCGAACACCGGGGAGCTGTTTTTT CASSRIPGQGARPDPNTGELFF TRBV28*01 TRBJ2-2*01 5.0 47.0 _CASSRIPGQGARPDPNTGELFF 6 5807 EBV-LMP2A EBV 0.45 700 NEG 285 5522 10 EBV LMP2A CLGGLLTMV effector memory T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*02:01 B2M MHCI -5643 chip0423_331491 11.23 6.56 Chip2 T1D_6 T1D TGCATCCTCCCACTTGCTGGTGGTACTAGCTATGGAAAGCTGACATTT CILPLAGGTSYGKLTF TRAV26-2*01 TRAJ52*01 31.0 1186.0 TGTGCCAGCAGCTTGGGACAGGCCTACGAGCAGTACTTC CASSLGQAYEQYF TRBV7-8*01 TRBJ2-7*01 29.0 1326.0 CILPLAGGTSYGKLTF_CASSLGQAYEQYF 308 7080 EBNA3A-193-201 EBV 0.64 1022 EBNA3A-193-201 270 6810 10 EBV EBNA3A FLRGRAYGL effector memory T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-B*08:01 B2M MHCI -5644 chip0423_322297 9.34 8.72 Chip2 T1D_6 T1D TGCATCCTGAGAGACTCCGCTGGTGGTACTAGCTATGGAAAGCTGACATTT CILRDSAGGTSYGKLTF TRAV26-2*01 TRAJ52*01 79.0 2946.0 TGCGCCAGCAACCATGGACGGGGGTTCCAAGAGACCCAGTACTTC CASNHGRGFQETQYF TRBV4-3*01 TRBJ2-5*01 17.0 1013.0 CILRDSAGGTSYGKLTF_CASNHGRGFQETQYF 1 7063 EBNA3A-193-201 EBV 0.43 1022 NEG 275 6788 8 EBV EBNA3A FLRGRAYGL effector memory T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-B*08:01 B2M MHCI -5645 chip0423_623239 -1.88 12.07 Chip2 T1D_4 T1D TGTGCCGTGTATTCAGGAGGAGGTGCTGACGGACTCACCTTT CAVYSGGGADGLTF TRAV12-2*01 TRAJ45*01 135.0 7129.0 TGTGCCAGCAGTTATGGCTACGAGCAGTACTTC CASSYGYEQYF TRBV6-1*01 TRBJ2-7*01 9.0 605.0 CAVYSGGGADGLTF_CASSYGYEQYF 1 4351 ZNT8-314-322 ZNT8 0.4 16 NEG 247 4104 1 HomoSapiens ZNT8 ILSAHVATA Naive T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*02:01 B2M MHCI -5646 chip0423_588457 -1.48 7.08 Chip2 T1D_4 T1D _ 6746 6447 MART1-ALA MART1 0.61 269 MART1-ALA 218 6229 3 HomoSapiens MART1 ALAGIGILTV Naive T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*02:01 B2M MHCI -5647 chip0423_873219 16.56 10.56 Chip2 T1D_6 T1D TGTGCCAGTAGTGACCGGGGGGGCTACGAGCAGTACTTC CASSDRGGYEQYF TRBV19*01 TRBJ2-7*01 16.0 1123.0 _CASSDRGGYEQYF 1 3781 M1 FLU 0.44 1250 NEG 298 3483 12 InfluenzaA M1 GILGFVFTL effector T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*02:01 B2M MHCI -5648 chip0423_32314 15.08 9.81 Chip2 T1D_4 T1D TGCATCGTCAGAGAGGGAGGAGGTGCTGACGGACTCCCCTTT CIVREGGGADGLPF TRAV26-1*01 TRAJ45*01 3.0 149.0 TGTGCCAGCAGCTTAGCGGTCGGAGAAGGGCCCCAGCATTTT CASSLAVGEGPQHF TRBV7-9*01 TRBJ1-5*01 79.0 3010.0 CIVREGGGADGLPF_CASSLAVGEGPQHF 21 6084 BZLF1-190-197 EBV 0.66 2156 BZLF1-190-197 296 5788 12 EBV BZLF1 RAKFKQLL effector T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-B*08:01 B2M MHCI -5649 chip0423_82720 13.6 11.05 Chip2 T1D_4 T1D TGCATCGTCAGAGAGGGAGGAGGTGCTGACGGACTCACCTTT CIVREGGGADGLTF TRAV26-1*01 TRAJ45*01 15.0 1145.0 TGTGCCAGCAGCTTAGCGGTCGGAGAAGGGCCCCAGCATTTT CASSLAVGEGPQHF TRBV7-9*01 TRBJ1-5*01 44.0 1874.0 CIVREGGGADGLTF_CASSLAVGEGPQHF 68 2268 BZLF1-190-197 EBV 0.81 2156 BZLF1-190-197 262 2006 9 EBV BZLF1 RAKFKQLL effector memory T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-B*08:01 B2M MHCI -5650 chip0423_620375 11.98 6.56 Chip2 T1D_5 T1D TGTGCAGCAACGGAAACCTCCTACGACAAGGTGATATTT CAATETSYDKVIF TRAV13-1*01 TRAJ50*01 12.0 1099.0 TGTGCCAGCAGCCCTCTTGGGAGCAATGAAAAACTGTTTTTT CASSPLGSNEKLFF TRBV7-9*01 TRBJ1-4*01 48.0 2135.0 CAATETSYDKVIF_CASSPLGSNEKLFF 25 6628 BZLF1-190-197 EBV 0.67 2156 NEG 301 6327 10 EBV BZLF1 RAKFKQLL effector memory T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-B*08:01 B2M MHCI -5651 chip0423_38828 11.73 6.24 Chip2 T1D_6 T1D TGCATCCTCCCACTTGCTGGTGGTACTAGCTATGGAAAGCTGACATTT CILPLAGGTSYGKLTF TRAV26-2*01 TRAJ52*01 46.0 1955.0 TGTGCCAGCAGCTTGGGACAGGCCTACGAGCAGTACTTC CASSLGQAYEQYF TRBV7-8*01 TRBJ2-7*01 15.0 688.0 CILPLAGGTSYGKLTF_CASSLGQAYEQYF 308 7449 EBNA3A-193-201 EBV 0.89 1022 EBNA3A-193-201 324 7125 10 EBV EBNA3A FLRGRAYGL effector memory T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-B*08:01 B2M MHCI -5652 chip0423_692453 -0.47 9.44 Chip2 T1D_6 T1D _ 6746 7286 G6PC2-NLI-8 IGRP 0.65 32 G6PC2-NLI-8 235 7051 3 HomoSapiens G6PC2 NLIFKWIL Naive T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-B*08:01 B2M MHCI -5653 chip0423_38685 14.26 10.24 Chip2 T1D_4 T1D TGCATCGTCACAAAGGGAGGAGGTGCTGACGCACTCACCTTT CIVTKGGGADALTF TRAV26-1*01 TRAJ45*01 23.0 1260.0 TGTGCCAGCAGCTTAGCGGTCGGAGAAGGGCCCCAGCATTTT CASSLAVGEGPQHF TRBV7-9*01 TRBJ1-5*01 50.0 1910.0 CIVTKGGGADALTF_CASSLAVGEGPQHF 1 3999 BZLF1-190-197 EBV 0.76 2156 BZLF1-190-197 288 3711 12 EBV BZLF1 RAKFKQLL effector T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-B*08:01 B2M MHCI -5654 chip0423_213026 13.65 6.83 Chip2 T1D_6 T1D TGCATCCTCCCACTTGCTGGTGGTACTAGCTATGGAAAGCTGACATTT CILPLAGGTSYGKLTF TRAV26-2*01 TRAJ52*01 2.0 109.0 TGTGCCAGCAGCTTGGGACAGGCCTACGAGCAGTACTTC CASSLGQAYEQYF TRBV7-8*01 TRBJ2-7*01 41.0 2274.0 CILPLAGGTSYGKLTF_CASSLGQAYEQYF 308 5367 EBNA3A-193-201 EBV 0.67 1022 NEG 285 5082 10 EBV EBNA3A FLRGRAYGL effector memory T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-B*08:01 B2M MHCI -5655 chip0423_26343 12.09 6.56 Chip2 T1D_5 T1D TGTGCCGCGAACAGCGGAGGAAACACACCTCTTGTCTTT CAANSGGNTPLVF TRAV12-2*01 TRAJ29*01 27.0 2800.0 TGTGCCATCAGTGAGACCCGACAGTATTCCTACGAGCAGTACTTC CAISETRQYSYEQYF TRBV10-3*01 TRBJ2-7*01 236.0 9641.0 CAANSGGNTPLVF_CAISETRQYSYEQYF 1 4418 BZLF1-190-197 EBV 1.0 2156 NEG 304 4114 10 EBV BZLF1 RAKFKQLL effector memory T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-B*08:01 B2M MHCI -5656 chip0423_852522 11.34 6.4 Chip2 T1D_6 T1D TGCATCCTCCCACTTGCTGGTGGTACTAGCTATGGAAAGCTGACATTT CILPLAGGTSYGKLTF TRAV26-2*01 TRAJ52*01 87.0 4070.0 TGTGCCAGCAGCTTGGGACAGGCCTACGAGCAGTACTTC CASSLGQAYEQYF TRBV7-8*01 TRBJ2-7*01 12.0 871.0 CILPLAGGTSYGKLTF_CASSLGQAYEQYF 308 7467 EBNA3A-193-201 EBV 0.79 1022 EBNA3A-193-201 292 7175 10 EBV EBNA3A FLRGRAYGL effector memory T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-B*08:01 B2M MHCI -5657 chip0423_328478 13.0 10.23 Chip2 T1D_6 T1D TGTGCCAGCAGCTTGGGACAGGCCTACGAGCAGTACTTC CASSLGQAYEQYF TRBV7-8*01 TRBJ2-7*01 33.0 2230.0 _CASSLGQAYEQYF 175 4974 EBNA3A-193-201 EBV 0.94 1022 EBNA3A-193-201 266 4708 9 EBV EBNA3A FLRGRAYGL effector memory T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-B*08:01 B2M MHCI -5658 chip0423_59261 12.79 6.51 Chip2 T1D_6 T1D TGTGCCGTGGGCGGCTTT CAVGGF TRAV39*01 TRAJ37*01,TRAJ11*01 2.0 277.0 TGTGCCAGCAGAGCAAACAGTCTCTACGAGCAGTACTTC CASRANSLYEQYF TRBV2*01 TRBJ2-7*01 14.0 902.0 CAVGGF_CASRANSLYEQYF 1 8351 NP140-148 FLU 0.69 102 NP140-148 289 8062 10 InfluenzaA NP HSNLNDATY effector memory T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*01:01 B2M MHCI -5659 chip0423_219763 12.38 6.09 Chip2 healthy_4 healthy TGTGCTGTGGAGGATCAAGGGAGATCTTATAACACCGACAAGCTCATCTTT CAVEDQGRSYNTDKLIF TRAV2*01 TRAJ34*01 1.0 44.0 TGTGCCAGCAGCTTAAACGTCGGGGAGGGCGCAGGAAACACCATATATTTT CASSLNVGEGAGNTIYF TRBV7-6*01 TRBJ1-3*01 40.0 1446.0 CAVEDQGRSYNTDKLIF_CASSLNVGEGAGNTIYF 10 5833 BZLF1-190-197 EBV 1.0 2156 NEG 264 5569 10 EBV BZLF1 RAKFKQLL effector memory T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-B*08:01 B2M MHCI -5660 chip0423_653602 10.14 7.49 Chip2 T1D_6 T1D TGAGCCGTGAATCTTCGGGCTGGCAACAACCATAGGCTGGTCTGG *AVNLRAGNNHRLVW TRAV8-1*01 TRAJ38*01 2.0 76.0 TGTGCCAGCAGCTTGGGACAGGCCTACGAGCAGTACTTC CASSLGQAYEQYF TRBV7-8*01 TRBJ2-7*01 14.0 728.0 *AVNLRAGNNHRLVW_CASSLGQAYEQYF 1 7638 EBNA3A-193-201 EBV 0.71 1022 EBNA3A-193-201 266 7372 10 EBV EBNA3A FLRGRAYGL effector memory T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-B*08:01 B2M MHCI -5661 chip0423_574787 8.96 8.05 Chip2 T1D_4 T1D TGTGCCGTACTCATGGAATATGGAAACAAACTGGTCTTT CAVLMEYGNKLVF TRAV12-2*01 TRAJ47*01 55.0 1941.0 TGTGCCAGCAGTTGGACAGGGGGCATCACTGAAGCTTTCTTT CASSWTGGITEAFF TRBV27*01 TRBJ1-1*01 124.0 4765.0 CAVLMEYGNKLVF_CASSWTGGITEAFF 2 6674 BZLF1-190-197 EBV 0.46 2156 NEG 316 6358 8 EBV BZLF1 RAKFKQLL effector memory T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-B*08:01 B2M MHCI -5662 chip0423_730455 9.76 7.26 Chip2 T1D_4 T1D TGCATCGTCAGAGAGGGAGGAGGTGCTGACGGACTCACCTTT CIVREGGGADGLTF TRAV26-1*01 TRAJ45*01 24.0 946.0 CIVREGGGADGLTF_ 9 5600 BZLF1-190-197 EBV 0.97 2156 BZLF1-190-197 258 5342 10 EBV BZLF1 RAKFKQLL effector memory T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-B*08:01 B2M MHCI -5663 chip0423_224541 13.9 8.16 Chip2 T1D_4 T1D TGCATCATCAGGGCGGGAGGAGGTTCTGACGGGCTCACGTTT CIIRAGGGSDGLTF TRAV26-1*01 TRAJ45*01 14.0 909.0 TGTGCCAGCAGCTTAGCGGTCGGAGAAGGGCCCCAGCATTTT CASSLAVGEGPQHF TRBV7-9*01 TRBJ1-5*01 64.0 3263.0 CIIRAGGGSDGLTF_CASSLAVGEGPQHF 1 2182 BZLF1-190-197 EBV 0.83 2156 NEG 273 1909 10 EBV BZLF1 RAKFKQLL effector memory T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-B*08:01 B2M MHCI -5664 chip0423_846961 11.4 6.44 Chip2 T1D_6 T1D TGCATCCTCCCACTTGCTGGTGGTACTAGCTATGGAAAGCTGACATTT CILPLAGGTSYGKLTF TRAV26-2*01 TRAJ52*01 95.0 4813.0 TGTGCCAGCAGCTTGGGACAGGCCTACGAGCAGTACTTC CASSLGQAYEQYF TRBV7-8*01 TRBJ2-7*01 3.0 125.0 CILPLAGGTSYGKLTF_CASSLGQAYEQYF 308 8035 EBNA3A-193-201 EBV 0.69 1022 EBNA3A-193-201 293 7742 10 EBV EBNA3A FLRGRAYGL effector memory T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-B*08:01 B2M MHCI -5665 chip0423_598834 9.71 8.14 Chip2 T1D_4 T1D TGTGCCAGCAGCTTAGCGGTCGGAGAAGGGCCCCAGCATTTT CASSLAVGEGPQHF TRBV7-9*01 TRBJ1-5*01 122.0 4647.0 _CASSLAVGEGPQHF 113 5153 BZLF1-190-197 EBV 0.98 2156 BZLF1-190-197 286 4867 8 EBV BZLF1 RAKFKQLL effector memory T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-B*08:01 B2M MHCI -5666 chip0423_221459 6.66 11.08 Chip2 T1D_6 T1D TGTGCAGCGAATTATGGAGGAAGCCAAGGAAATCTCATCTTT CAANYGGSQGNLIF TRAV25*01 TRAJ42*01 46.0 3188.0 TGTGCCAGTAGTATGCGTAGCACAGATACGCAGTATTTT CASSMRSTDTQYF TRBV19*01 TRBJ2-3*01 34.0 1585.0 CAANYGGSQGNLIF_CASSMRSTDTQYF 1 9072 M1 FLU 0.76 1250 M1 274 8798 7 InfluenzaA M1 GILGFVFTL transitional T cells between effector and memory populations PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*02:01 B2M MHCI -5667 chip0423_793923 12.5 10.74 Chip2 T1D_4 T1D TGTGCCGTGCCGGCCACCGACAAGCTCATCTTT CAVPATDKLIF TRAV8-1*01 TRAJ34*01 11.0 1053.0 TGTGCCAGCAGTGAGTGGGAGCTGAACCATGGCTACACCTTC CASSEWELNHGYTF TRBV25-1*01 TRBJ1-2*01 7.0 186.0 CAVPATDKLIF_CASSEWELNHGYTF 1 5921 EBV-BRLF1 EBV 0.58 1264 EBV-BRLF1 280 5641 9 EBV BRLF1 YVLDHLIVV effector memory T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*02:01 B2M MHCI -5668 chip0423_553531 9.5 9.1 Chip2 T1D_6 T1D TGCATCGCCGTTACCTCGTCCCGGTAACCAGTTCTCTTTT CIAVTStc??ccGNQFSF TRAV26-1*01 TRAJ49*01 27.0 2062.0 TGCAGCGCCGGCAGGGACGGGACTAATGAAAAACTGTTTTTT CSAGRDGTNEKLFF TRBV29-1*01 TRBJ1-4*01 99.0 5855.0 CIAVTStc??ccGNQFSF_CSAGRDGTNEKLFF 4 5743 EBV-BLMF1 EBV 0.4 2531 NEG 300 5443 8 EBV BLMF1 GLCTLVAML effector memory T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*02:01 B2M MHCI -5669 chip0423_630820 12.74 6.92 Chip2 T1D_4 T1D TGCATCGTCAGAGAGGGAGGAGGTGCTGACGGACTCACCTTT CIVREGGGADGLTF TRAV26-1*01 TRAJ45*01 21.0 1597.0 TGTGCCAGCAGCTTAGCGGTCGGAGAAGGGCCCCAGCATTTT CASSLAVGEGPQHF TRBV7-9*01 TRBJ1-5*01 139.0 5159.0 CIVREGGGADGLTF_CASSLAVGEGPQHF 68 4156 BZLF1-190-197 EBV 0.86 2156 BZLF1-190-197 284 3872 10 EBV BZLF1 RAKFKQLL effector memory T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-B*08:01 B2M MHCI -5670 chip0423_511379 9.04 7.49 Chip2 T1D_4 T1D TGTGCCGGTTCTCGCACCGACAAGCTCATCTTT CAGSRTDKLIF TRAV27*01 TRAJ34*01 22.0 1682.0 TGTGCCAGCAGCTCGACAGGGGGCGGGGATCAGCCCCAGCATTTT CASSSTGGGDQPQHF TRBV7-9*01 TRBJ1-5*01 107.0 3615.0 CAGSRTDKLIF_CASSSTGGGDQPQHF 1 8509 BZLF1-190-197 EBV 0.4 2156 NEG 269 8240 8 EBV BZLF1 RAKFKQLL effector memory T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-B*08:01 B2M MHCI -5671 chip0423_365374 13.12 7.01 Chip2 T1D_6 T1D TGTGCCAGCAGCTTGGGACAGGCCTACGAGCAGTACTTC CASSLGQAYEQYF TRBV7-8*01 TRBJ2-7*01 35.0 1942.0 _CASSLGQAYEQYF 175 4390 EBNA3A-193-201 EBV 0.73 1022 NEG 279 4111 10 EBV EBNA3A FLRGRAYGL effector memory T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-B*08:01 B2M MHCI -5672 chip0423_119572 5.93 11.99 Chip2 T1D_6 T1D TGTGCCAGCAGCCCCCTACTTGGGGACAACCAATTCTATGGCTACACCTTC CASSPLLGDNQFYGYTF TRBV7-6*01 TRBJ1-2*01 24.0 1095.0 _CASSPLLGDNQFYGYTF 1 6011 BZLF1-190-197 EBV 0.76 2156 BZLF1-190-197 283 5728 7 EBV BZLF1 RAKFKQLL transitional T cells between effector and memory populations PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-B*08:01 B2M MHCI -5673 chip0423_718957 13.13 10.06 Chip2 T1D_5 T1D TGTGCTGTGACCCCGATCACGGGCGGCGGCAACAAACTCACCTTT CAVTPITGGGNKLTF TRAV8-4*01 TRAJ10*01 85.0 3671.0 TGCGCCAGCAACTTGGTGGGGGGAGAGGAAGAGCAGTACTTC CASNLVGGEEEQYF TRBV5-1*01 TRBJ2-7*01 45.0 2862.0 CAVTPITGGGNKLTF_CASNLVGGEEEQYF 1 3675 BZLF1-190-197 EBV 0.56 2156 NEG 272 3403 12 EBV BZLF1 RAKFKQLL effector T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-B*08:01 B2M MHCI -5674 chip0423_726657 11.01 7.2 Chip2 T1D_6 T1D TGTGCCAGCAGCTTGGGACAGGCTTACGAGCAATACTTC CASSLGQAYEQYF TRBV7-8*01 TRBJ2-7*01 5.0 234.0 _CASSLGQAYEQYF 175 5014 EBNA3A-193-201 EBV 0.9 1022 EBNA3A-193-201 265 4749 10 EBV EBNA3A FLRGRAYGL effector memory T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-B*08:01 B2M MHCI -5675 chip0423_534178 12.15 6.64 Chip2 T1D_6 T1D TGCATCCTCCCACTTGCTGGTGGTACTAGCTATGGAAAGCTGACATTT CILPLAGGTSYGKLTF TRAV26-2*01 TRAJ52*01 69.0 3060.0 TGTGCCAGCAGCTTGGGACAGGCCTACGAGCAGTACTTC CASSLGQAYEQYF TRBV7-8*01 TRBJ2-7*01 9.0 307.0 CILPLAGGTSYGKLTF_CASSLGQAYEQYF 308 6024 EBNA3A-193-201 EBV 0.82 1022 EBNA3A-193-201 292 5732 10 EBV EBNA3A FLRGRAYGL effector memory T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-B*08:01 B2M MHCI -5676 chip0423_366371 6.95 12.58 Chip2 T1D_6 T1D TGTGCTGTGGGGACCATGGCTCTAGCAACACAGGCAAACTAATCTTT CAVGTMAct?SNTGKLIF TRAV8-3*01 TRAJ37*01 27.0 1536.0 CAVGTMAct?SNTGKLIF_ 3 6336 NP380-388 FLU 0.52 60 NEG 280 6056 7 InfluenzaA NP ELRSRYWAI transitional T cells between effector and memory populations PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-B*08:01 B2M MHCI -5677 chip0423_255297 10.93 6.7 Chip2 T1D_6 T1D TGCATCCTCCCACTTGCTGGTGGTACTAGCTATGGAAAGCTGACATTT CILPLAGGTSYGKLTF TRAV26-2*01 TRAJ52*01 90.0 2188.0 TGTGCCAGCAGCTTGGGACAGGCCTACGAGCAGTACTTC CASSLGQAYEQYF TRBV7-8*01 TRBJ2-7*01 35.0 1347.0 CILPLAGGTSYGKLTF_CASSLGQAYEQYF 308 6533 EBNA3A-193-201 EBV 0.94 1022 EBNA3A-193-201 300 6233 10 EBV EBNA3A FLRGRAYGL effector memory T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-B*08:01 B2M MHCI -5678 chip0423_680854 11.15 8.4 Chip2 T1D_6 T1D TGCATCCTCCCACTTGCTGGTGGTACTAGCTATGGAAAGCTGACATTT CILPLAGGTSYGKLTF TRAV26-2*01 TRAJ52*01 43.0 2050.0 TGTGCCAGCAGCTTGGGACAGGCCTACGAGCAGTACTTC CASSLGQAYEQYF TRBV7-8*01 TRBJ2-7*01 13.0 500.0 CILPLAGGTSYGKLTF_CASSLGQAYEQYF 308 5232 EBNA3A-193-201 EBV 0.89 1022 EBNA3A-193-201 259 4973 10 EBV EBNA3A FLRGRAYGL effector memory T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-B*08:01 B2M MHCI -5679 chip0423_534348 14.23 8.28 Chip2 T1D_5 T1D TGTGCAGCAAGCGAAACCTCCTACGACAAGGTGATATTT CAASETSYDKVIF TRAV13-1*01 TRAJ50*01 22.0 2067.0 TGTGCTCTGAGACAATCTTTGGAAATGAGAAATTAACCTTT CALRQStt?GNEKLTF TRAV19*01 TRAJ48*01 35.0 2003.0 0.56 TGTGCCAGCAGCTCGTTGGGACAGAGAGAGACCCAGTACTTC CASSSLGQRETQYF TRBV7-9*01 TRBJ2-5*01 120.0 6637.0 CAASETSYDKVIF_CASSSLGQRETQYF 2 2938 BZLF1-190-197 EBV 0.62 2156 NEG 306 2632 10 EBV BZLF1 RAKFKQLL effector memory T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-B*08:01 B2M MHCI -5680 chip0423_67100 5.23 9.87 Chip2 T1D_4 T1D TGTGCCGTGAATGCTTTTTCTGGTGGCTACAATAAGCTGATTTTT CAVNAFSGGYNKLIF TRAV8-1*01 TRAJ4*01 70.0 2664.0 TGTGCCAGCAGCCAGGAGGACTCCCGTTGGGAGCAGTTCTTC CASSQEDSRWEQFF TRBV14*01 TRBJ2-1*01 16.0 498.0 CAVNAFSGGYNKLIF_CASSQEDSRWEQFF 3 5484 EBV-LMP1-1 EBV 1.0 237 NEG 281 5203 6 EBV LMP1 YLLEMLWRL central memory T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*02:01 B2M MHCI -5681 chip0423_95526 5.58 8.82 Chip2 T1D_6 T1D TGCGCCAGCAGTGACATTAGGGAGGGGCAGGGTGAAGCTTTCTTT CASSDIREGQGEAFF TRBV10-2*01 TRBJ1-1*01 25.0 969.0 _CASSDIREGQGEAFF 37 8137 EBNA3A-158-166 EBV 0.68 444 NEG 307 7830 6 EBV EBNA3A QAKWRLQTL central memory T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-B*08:01 B2M MHCI -5682 chip0423_624034 8.5 8.5 Chip2 T1D_6 T1D _ 6746 9202 EBNA3A-158-166 EBV 0.69 444 NEG 257 8945 8 EBV EBNA3A QAKWRLQTL effector memory T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-B*08:01 B2M MHCI -5683 chip0423_242592 10.94 7.0 Chip2 T1D_4 T1D TGTGCTCTCGTGAATTATGGAGGAAGCCAAGGAAATCTCATCTTT CALVNYGGSQGNLIF TRAV19*01 TRAJ42*01 134.0 5418.0 TGTGCCGTCTGGAGGGACGGAGCCTACGAGCAGTACTTC CAVWRDGAYEQYF TRBV28*01 TRBJ2-7*01 52.0 3414.0 CALVNYGGSQGNLIF_CAVWRDGAYEQYF 13 8484 EBV-LMP1-1 EBV 0.82 237 NEG 299 8185 10 EBV LMP1 YLLEMLWRL effector memory T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*02:01 B2M MHCI -5684 chip0423_371277 14.16 9.89 Chip2 T1D_5 T1D TGTACAGCAAGGGAAACCTCCTACGACAAGGTGATATTT CTARETSYDKVIF TRAV13-1*01 TRAJ50*01 34.0 3070.0 TGTGCCAGCACCAACCTGGGAGGGTTCACAGATACGCAGTATTTT CASTNLGGFTDTQYF TRBV7-9*01 TRBJ2-3*01 115.0 5169.0 CTARETSYDKVIF_CASTNLGGFTDTQYF 1 3555 BZLF1-190-197 EBV 0.75 2156 NEG 221 3334 12 EBV BZLF1 RAKFKQLL effector T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-B*08:01 B2M MHCI -5685 chip0423_556617 7.24 12.71 Chip2 T1D_6 T1D TGTGCCTCCCAAGGAGGAAGCCAAGGAAATCTCATCTTT CASQGGSQGNLIF TRAV20*01 TRAJ42*01 32.0 1998.0 TGTGCCAGCAGCTTAGGAGGACAGACAGAGACCCAGTACTTC CASSLGGQTETQYF TRBV13*01 TRBJ2-5*01 19.0 1053.0 CASQGGSQGNLIF_CASSLGGQTETQYF 13 5031 ROTA-VP6 ROTA 0.55 47 ROTA-VP6 253 4778 7 RotavirusA VP6 TLLANVTAV transitional T cells between effector and memory populations PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*02:01 B2M MHCI -5686 chip0423_765116 10.08 6.8 Chip2 T1D_4 T1D TGCCTCCTGCCTCTTGCTGGTGGTACTGGCTATGGAAAGCTGACATTT CLLPLAGGTGYGKLTF TRAV26-2*01 TRAJ52*01 6.0 116.0 TGTGCCAGCAGCTTAGGGCAAGCCTACGAGCAGTACTTC CASSLGQAYEQYF TRBV7-8*01 TRBJ2-7*01 62.0 3395.0 CLLPLAGGTGYGKLTF_CASSLGQAYEQYF 1 7762 EBNA3A-193-201 EBV 0.78 1022 NEG 312 7450 10 EBV EBNA3A FLRGRAYGL effector memory T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-B*08:01 B2M MHCI -5687 chip0423_175286 11.62 6.19 Chip2 T1D_4 T1D TGTGCTGTGAGTGATGGAGAAGGCGCCCAGAAGCTGGTATTT CAVSDGEGAQKLVF TRAV8-6*01 TRAJ54*01 89.0 3718.0 TGTGCCAGCAGCTTAACGGTTCTGGCAGGTCCAAACACTGAAGCTTTCTTT CASSLTVLAGPNTEAFF TRBV7-3*01 TRBJ1-1*01 99.0 3123.0 CAVSDGEGAQKLVF_CASSLTVLAGPNTEAFF 44 6635 BZLF1-190-197 EBV 0.92 2156 BZLF1-190-197 299 6336 10 EBV BZLF1 RAKFKQLL effector memory T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-B*08:01 B2M MHCI -5688 chip0423_148540 9.39 9.83 Chip2 T1D_4 T1D CGTGCCAGCAGTTTACTTGCATCGGAGGGGGGGGGCTACGAGCAGTACTTC RASSLLASEGGGYEQYF TRBV28*01 TRBJ2-7*01 12.0 562.0 _RASSLLASEGGGYEQYF 1 6516 EBNA3A-158-166 EBV 0.72 444 EBNA3A-158-166 265 6251 8 EBV EBNA3A QAKWRLQTL effector memory T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-B*08:01 B2M MHCI -5689 chip0423_830404 -2.16 12.61 Chip2 T1D_4 T1D TGTGCTACCATTTTGTCTACTGGAGGCTTCAAAACTATCTCT CATILSTGGFKTIS TRAV17*01 TRAJ9*01 36.0 1200.0 TGTGCCAGCAGTTTAGGTCCGGCCGGGGTGTATGGCTACACCTTC CASSLGPAGVYGYTF TRBV12-3*01,TRBV12-4*01 TRBJ1-2*01 14.0 844.0 CATILSTGGFKTIS_CASSLGPAGVYGYTF 1 3638 MART1-A28L MART1 0.52 84 NEG 231 3407 1 HomoSapiens MART1 ALGIGILTV Naive T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*02:01 B2M MHCI -5690 chip0423_813674 11.29 9.29 Chip2 T1D_6 T1D TGTGCCAGCAGCTTGGGACAGGCCTACGAGCAGTACCTC CASSLGQAYEQYL TRBV7-8*01 TRBJ2-7*01 16.0 799.0 _CASSLGQAYEQYL 1 5591 EBNA3A-193-201 EBV 0.69 1022 NEG 266 5325 10 EBV EBNA3A FLRGRAYGL effector memory T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-B*08:01 B2M MHCI -5691 chip0423_526052 11.67 10.85 Chip2 T1D_4 T1D TGTGCCAGCAGCCAAGTCAACAACCCGGGGGATGGCTACACCTTC CASSQVNNPGDGYTF TRBV14*01 TRBJ1-2*01 5.0 108.0 _CASSQVNNPGDGYTF 94 4039 EBNA3A-158-166 EBV 0.71 444 NEG 277 3762 9 EBV EBNA3A QAKWRLQTL effector memory T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-B*08:01 B2M MHCI -5692 chip0423_582040 10.59 7.14 Chip2 T1D_6 T1D TTTGCCAGCAGCTTGGGGCTGCCCTACGAGCAGTACTTC FASSLGLPYEQYF TRBV7-8*01 TRBJ2-7*01 12.0 797.0 _FASSLGLPYEQYF 1 6879 EBNA3A-193-201 EBV 0.81 1022 EBNA3A-193-201 281 6598 10 EBV EBNA3A FLRGRAYGL effector memory T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-B*08:01 B2M MHCI -5693 chip0423_23890 11.28 9.86 Chip2 T1D_4 T1D TGCATCGTCAGAGAGGGAGGAGGTGCTGACGGACTCACCTTT CIVREGGGADGLTF TRAV26-1*01 TRAJ45*01 99.0 5285.0 TGTGCCAGCAGCTTAGCGGTCGGAGAAGGGCCCCAGCATTTT CASSLAVGEGPQHF TRBV7-9*01 TRBJ1-5*01 66.0 2986.0 CIVREGGGADGLTF_CASSLAVGEGPQHF 68 4445 BZLF1-190-197 EBV 0.85 2156 BZLF1-190-197 261 4184 9 EBV BZLF1 RAKFKQLL effector memory T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-B*08:01 B2M MHCI -5694 chip0423_830628 13.1 7.27 Chip2 T1D_5 T1D TGTGCAGCAACGGAAACCTCCTACGACAAGGTGATATTT CAATETSYDKVIF TRAV13-1*01 TRAJ50*01 33.0 2002.0 TGTGCCAGCAGCCGCCTGGGGACGGAAGAGACCCAGTACTTC CASSRLGTEETQYF TRBV7-9*01 TRBJ2-5*01 78.0 4393.0 CAATETSYDKVIF_CASSRLGTEETQYF 2 3577 BZLF1-190-197 EBV 0.67 2156 NEG 265 3312 10 EBV BZLF1 RAKFKQLL effector memory T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-B*08:01 B2M MHCI -5695 chip0423_840135 13.37 6.67 Chip2 T1D_6 T1D TGCAGCGCCGGCAGGGACGGGACTAATGAAAAACTGTTTTTT CSAGRDGTNEKLFF TRBV29-1*01 TRBJ1-4*01 157.0 7061.0 _CSAGRDGTNEKLFF 159 4501 EBV-BLMF1 EBV 0.42 2531 NEG 273 4228 10 EBV BLMF1 GLCTLVAML effector memory T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*02:01 B2M MHCI -5696 chip0423_281942 15.41 8.8 Chip2 T1D_6 T1D TGCATCCTCCCACTTGCTGGTGGTACTAGCTATGGAAAGCTGACATTT CILPLAGGTSYGKLTF TRAV26-2*01 TRAJ52*01 62.0 1551.0 TGTGCCAGCAGCTTGGGACAGGCCTACGAGCAGTACTTC CASSLGQAYEQYF TRBV7-8*01 TRBJ2-7*01 33.0 2081.0 CILPLAGGTSYGKLTF_CASSLGQAYEQYF 308 5049 EBNA3A-193-201 EBV 0.69 1022 NEG 323 4726 12 EBV EBNA3A FLRGRAYGL effector T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-B*08:01 B2M MHCI -5697 chip0423_741968 6.33 11.72 Chip2 T1D_4 T1D TGTGCAGAGGAGGGAAGCCAAGGAAATCTCATCTTT CAEEGSQGNLIF TRAV5*01 TRAJ42*01 10.0 927.0 TGTGCCAGTAGTCCTCGGTCCAATATTGAGCAGTTCTTC CASSPRSNIEQFF TRBV19*01 TRBJ2-1*01 28.0 2140.0 CAEEGSQGNLIF_CASSPRSNIEQFF 1 7309 M1 FLU 0.73 1250 M1 263 7046 7 InfluenzaA M1 GILGFVFTL transitional T cells between effector and memory populations PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*02:01 B2M MHCI -5698 chip0423_244091 14.72 9.08 Chip2 T1D_6 T1D TGTGCAGCAAGTGAGACCTCCTACGACAAGGTGATATTT CAASETSYDKVIF TRAV13-1*01 TRAJ50*01 3.0 230.0 TGCAGCGTGGGGACAGGGGGCACTAATGAAAAACTGTTTTTT CSVGTGGTNEKLFF TRBV29-1*01 TRBJ1-4*01 12.0 252.0 CAASETSYDKVIF_CSVGTGGTNEKLFF 1 3846 EBV-BLMF1 EBV 1.0 2531 NEG 293 3553 12 EBV BLMF1 GLCTLVAML effector T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*02:01 B2M MHCI -5699 chip0423_32668 11.31 6.98 Chip2 T1D_4 T1D TGTGCAATGAGAGAGGGCGAGAACAATGCCAGACTCATGTTT CAMREGENNARLMF TRAV14/DV4*01 TRAJ31*01 36.0 1689.0 TGCAGCGTTGCAAGTCTGTGGGGCTACACCTTC CSVASLWGYTF TRBV29-1*01 TRBJ1-2*01 97.0 8418.0 CAMREGENNARLMF_CSVASLWGYTF 1 6071 NP140-148 FLU 0.44 102 NEG 310 5761 10 InfluenzaA NP HSNLNDATY effector memory T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*01:01 B2M MHCI -5700 chip0423_254894 8.6 9.34 Chip2 T1D_6 T1D TGCAGCGCCGGCAGGGACGGGACTAATGAAAAACTGTTTTTT CSAGRDGTNEKLFF TRBV29-1*01 TRBJ1-4*01 67.0 1822.0 _CSAGRDGTNEKLFF 159 6917 EBV-BLMF1 EBV 0.67 2531 NEG 257 6660 8 EBV BLMF1 GLCTLVAML effector memory T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*02:01 B2M MHCI -5701 chip0423_260250 9.81 7.36 Chip2 T1D_4 T1D TGTGCTGTCGCTTCCGGGCACCCCCCTCTTGTCTTT CAVASGHPPLVF TRAV1-2*01 TRAJ29*01 8.0 311.0 TGTGCCAGCAGCCAAGTCAACAACCCGGGGGATGGCTACACCTTC CASSQVNNPGDGYTF TRBV14*01 TRBJ1-2*01 10.0 276.0 CAVASGHPPLVF_CASSQVNNPGDGYTF 1 6971 EBNA3A-158-166 EBV 0.56 444 EBNA3A-158-166 337 6634 8 EBV EBNA3A QAKWRLQTL effector memory T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-B*08:01 B2M MHCI -5702 chip0423_103374 6.59 14.62 Chip2 T1D_5 T1D TGTGCAGGATTCCCGTGGGCTGCAGGCAACAAGCTAACTTTT CAGFPWAAGNKLTF TRAV25*01 TRAJ17*01 23.0 2027.0 CAGFPWAAGNKLTF_ 3 4282 NP44-52 FLU 0.85 474 NP44-52 257 4025 7 InfluenzaA NP CTELKLSDY transitional T cells between effector and memory populations PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*01:01 B2M MHCI -5703 chip0423_725438 15.5 10.45 Chip2 T1D_5 T1D TGTGCAGAGACGGAAACCTCCTACGACAAGGTGATATTT CAETETSYDKVIF TRAV13-2*01 TRAJ50*01 30.0 2125.0 TGTGCCAGCAGCTTCACTAGCGGGACAGATCCTGAGCTGTTTTTT CASSFTSGTDPELFF TRBV7-9*01 TRBJ2-2*01 25.0 1061.0 CAETETSYDKVIF_CASSFTSGTDPELFF 9 3557 BZLF1-190-197 EBV 0.57 2156 NEG 246 3311 12 EBV BZLF1 RAKFKQLL effector T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-B*08:01 B2M MHCI -5704 chip0423_651774 11.28 6.2 Chip2 T1D_6 T1D TGTGCCAGCAGCTTGGGACAGGCCTACGAGCAGTACTTC CASSLGQAYEQYF TRBV7-8*01 TRBJ2-7*01 52.0 2419.0 _CASSLGQAYEQYF 175 8133 EBNA3A-193-201 EBV 0.6 1022 EBNA3A-193-201 282 7851 10 EBV EBNA3A FLRGRAYGL effector memory T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-B*08:01 B2M MHCI -5705 chip0423_425228 8.94 7.55 Chip2 T1D_4 T1D TGCATCGTCAGAGAGGGAGGAGGTGCTGACGGACTCCCCTTT CIVREGGGADGLPF TRAV26-1*01 TRAJ45*01 22.0 1039.0 CIVREGGGADGLPF_ 2 7626 BZLF1-190-197 EBV 0.66 2156 BZLF1-190-197 266 7360 8 EBV BZLF1 RAKFKQLL effector memory T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-B*08:01 B2M MHCI -5706 chip0423_238768 12.64 7.19 Chip2 T1D_6 T1D TGCATCCTCCCACTTGCTGGTGGTACTAGCTATGGAAAGCTGACATTT CILPLAGGTSYGKLTF TRAV26-2*01 TRAJ52*01 32.0 2270.0 TATGCAGCAAGCAAGATAGAGGAGGAGGTGCTGACGGACTCACCTTT YAASKIEga?GGADGLTF TRAV23/DV6*01 TRAJ45*01 47.0 1858.0 0.48 TGTGCCAGCAGCTTGGGACAGGCCTACGAGCAGTACTTC CASSLGQAYEQYF TRBV7-8*01 TRBJ2-7*01 29.0 2188.0 CILPLAGGTSYGKLTF_CASSLGQAYEQYF 308 4108 EBNA3A-193-201 EBV 1.0 1022 NEG 294 3814 10 EBV EBNA3A FLRGRAYGL effector memory T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-B*08:01 B2M MHCI -5707 chip0423_619101 12.21 7.05 Chip2 T1D_6 T1D TGCATCCTCCCACTTGCTGGTGGTACTAGCTATGGAAAGCTGACATTT CILPLAGGTSYGKLTF TRAV26-2*01 TRAJ52*01 22.0 1071.0 TGTGCCAGCAGCTTGGGACAGGCCTACGAGCAGTACTTC CASSLGQAYEQYF TRBV7-8*01 TRBJ2-7*01 43.0 2119.0 CILPLAGGTSYGKLTF_CASSLGQAYEQYF 308 4848 EBNA3A-193-201 EBV 0.9 1022 NEG 266 4582 10 EBV EBNA3A FLRGRAYGL effector memory T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-B*08:01 B2M MHCI -5708 chip0423_266181 12.86 6.43 Chip2 T1D_5 T1D TGTGCAGCAAGTGAAACCTCCTACGACAAGGTGATATTT CAASETSYDKVIF TRAV13-1*01 TRAJ50*01 18.0 2030.0 TGTGCCAGCAGTTTTACAGGTAGCTCTGGAAACACCATATATTTT CASSFTGSSGNTIYF TRBV12-3*01,TRBV12-4*01 TRBJ1-3*01 78.0 3007.0 CAASETSYDKVIF_CASSFTGSSGNTIYF 7 6129 BZLF1-190-197 EBV 0.59 2156 NEG 296 5833 10 EBV BZLF1 RAKFKQLL effector memory T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-B*08:01 B2M MHCI -5709 chip0423_789933 16.37 10.03 Chip2 T1D_6 T1D TGCATCCTCCCACTTGCTGGTGGTACTAGCTATGGAAAGCTGACATTT CILPLAGGTSYGKLTF TRAV26-2*01 TRAJ52*01 226.0 10505.0 TGTGCCAGCAGCTTGGGACAGGCCTACGAGCAGTACTTC CASSLGQAYEQYF TRBV7-8*01 TRBJ2-7*01 23.0 1252.0 CILPLAGGTSYGKLTF_CASSLGQAYEQYF 308 5965 EBNA3A-193-201 EBV 0.71 1022 NEG 264 5701 12 EBV EBNA3A FLRGRAYGL effector T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-B*08:01 B2M MHCI -5710 chip0423_748837 8.4 10.95 Chip2 T1D_4 T1D TGTGCAGCAAGCGACCGCCTTCCAGGAGGAAGCTACATACCTACATTT CAASDRLPGGSYIPTF TRAV13-1*01 TRAJ6*01 9.0 271.0 TGCAGTGCTACTAACCAGTACGACGGACCCGACACTGAAGCTTTCTTT CSATNQYDGPDTEAFF TRBV20-1*01 TRBJ1-1*01 87.0 3143.0 CAASDRLPGGSYIPTF_CSATNQYDGPDTEAFF 21 6264 BZLF1-190-197 EBV 0.41 2156 NEG 260 6004 8 EBV BZLF1 RAKFKQLL effector memory T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-B*08:01 B2M MHCI -5711 chip0423_590748 9.58 7.95 Chip2 T1D_6 T1D TGCGTCCTCCCTCTTGCTGGTGGTCCTCGCTCTGGCCAGCTGACATTT CVLPLAGGPRSGQLTF TRAV26-2*01 TRAJ52*01 9.0 364.0 TGTGCCAGCAGCTTGGGACAGGCCTACGAGCAGTACTTC CASSLGQAYEQYF TRBV7-8*01 TRBJ2-7*01 16.0 900.0 CVLPLAGGPRSGQLTF_CASSLGQAYEQYF 1 6489 EBNA3A-193-201 EBV 0.83 1022 EBNA3A-193-201 278 6211 8 EBV EBNA3A FLRGRAYGL effector memory T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-B*08:01 B2M MHCI -5712 chip0423_444061 -0.75 9.47 Chip2 T1D_5 T1D TGTGCTGTGATTACTCGGGATAGCAACTATCAGTTAATCTGG CAVITRDSNYQLIW TRAV21*01 TRAJ33*01 40.0 1367.0 TGTGCCAGCAGTTACTCTGGGAATCAGCCCCAGCATTTT CASSYSGNQPQHF TRBV6-5*01 TRBJ1-5*01 82.0 2720.0 CAVITRDSNYQLIW_CASSYSGNQPQHF 1 6548 NP44-52 FLU 0.62 474 NEG 230 6318 3 InfluenzaA NP CTELKLSDY Naive T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*01:01 B2M MHCI -5713 chip0423_662638 13.53 6.94 Chip2 T1D_6 T1D TGCATCCTCCCACTTGCTGGTGGTACTAGCTATGGAAAGCTGACATTT CILPLAGGTSYGKLTF TRAV26-2*01 TRAJ52*01 32.0 1223.0 TGTGCCAGCAGCTTGGGACAGGCCTACGAGCAGTACTTC CASSLGQAYEQYF TRBV7-8*01 TRBJ2-7*01 16.0 728.0 CILPLAGGTSYGKLTF_CASSLGQAYEQYF 308 4736 EBNA3A-193-201 EBV 0.73 1022 NEG 289 4447 10 EBV EBNA3A FLRGRAYGL effector memory T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-B*08:01 B2M MHCI -5714 chip0423_338461 7.15 12.21 Chip2 T1D_5 T1D TGTGTGGTGATGGGCCCGGGGGGAGGAAGCTACATACCTACATTT CVVMGPGGGSYIPTF TRAV12-1*01 TRAJ6*01 33.0 1857.0 TGCGCCAGCAGTGAGTCGATTGGGTACGAGCAGTACTTC CASSESIGYEQYF TRBV10-2*01 TRBJ2-7*01 80.0 4791.0 CVVMGPGGGSYIPTF_CASSESIGYEQYF 1 6934 G6PC2-LTS-10 IGRP 0.92 59 G6PC2-LTS-10 240 6694 7 HomoSapiens G6PC2 LTSLTILQLY transitional T cells between effector and memory populations PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*01:01 B2M MHCI -5715 chip0423_810508 14.93 12.47 Chip2 T1D_5 T1D TGTGCAGCAAGTGAAACCTCCTACGACAAGGTGATATTT CAASETSYDKVIF TRAV13-1*01 TRAJ50*01 15.0 1178.0 TGTGCCAGCAGCTGGCTCGGGGATCGGTATAATTCACCCCTCCACTTT CASSWLGDRYNSPLHF TRBV7-9*01 TRBJ1-6*01 45.0 2502.0 CAASETSYDKVIF_CASSWLGDRYNSPLHF 65 2994 BZLF1-190-197 EBV 0.6 2156 NEG 259 2735 12 EBV BZLF1 RAKFKQLL effector T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-B*08:01 B2M MHCI -5716 chip0423_345891 8.91 7.52 Chip2 T1D_6 T1D TGCATCCTCCCACTTGCTGGTGGTACTAGCTATGGAAAGCTGACATTT CILPLAGGTSYGKLTF TRAV26-2*01 TRAJ52*01 62.0 2955.0 TGTGCAGCAAGCGCGCGTCAGGGAGCCCAGAAGCTGGTATTT CAASARQGAQKLVF TRAV29/DV5*01 TRAJ54*01 46.0 2980.0 0.36 TGCGCCAGCAGCTTGTGGCAGGGCTACGAGCAGTACTTC CASSLWQGYEQYF TRBV5-1*01 TRBJ2-7*01 44.0 2945.0 CILPLAGGTSYGKLTF_CASSLWQGYEQYF 1 9598 EBNA3A-193-201 EBV 0.59 1022 EBNA3A-193-201 320 9278 8 EBV EBNA3A FLRGRAYGL effector memory T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-B*08:01 B2M MHCI -5717 chip0423_10696 12.95 9.95 Chip2 T1D_6 T1D TGCATCCTCCCACTTGCTGGTGGTACTAGCTATGGAAAGCTGACATTT CILPLAGGTSYGKLTF TRAV26-2*01 TRAJ52*01 13.0 439.0 TGTGCCAGCAGCTTGGGACAGGCCTACGAGCAGTACTTC CASSLGQAYEQYF TRBV7-8*01 TRBJ2-7*01 2.0 73.0 CILPLAGGTSYGKLTF_CASSLGQAYEQYF 308 3756 EBNA3A-193-201 EBV 0.88 1022 NEG 269 3487 9 EBV EBNA3A FLRGRAYGL effector memory T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-B*08:01 B2M MHCI -5718 chip0423_281674 7.45 12.2 Chip2 T1D_6 T1D TGTGCCTCCCAAGGAGGAAGCCAAGGAAATCTCATCTTT CASQGGSQGNLIF TRAV20*01 TRAJ42*01 70.0 4011.0 TGTGCCAGCAGCTTAGGAGGACAGACAGAGACCCAGTACTTC CASSLGGQTETQYF TRBV13*01 TRBJ2-5*01 16.0 898.0 CASQGGSQGNLIF_CASSLGGQTETQYF 13 7405 ROTA-VP6 ROTA 0.42 47 NEG 220 7185 7 RotavirusA VP6 TLLANVTAV transitional T cells between effector and memory populations PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*02:01 B2M MHCI -5719 chip0423_442122 14.96 12.9 Chip2 T1D_6 T1D TGCAGCGCCGGCAGGGACGGGACTAATGAAAAACTGTTTTTT CSAGRDGTNEKLFF TRBV29-1*01 TRBJ1-4*01 117.0 6421.0 _CSAGRDGTNEKLFF 159 1954 EBV-BLMF1 EBV 0.57 2531 NEG 266 1688 12 EBV BLMF1 GLCTLVAML effector T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*02:01 B2M MHCI -5720 chip0423_335752 -0.95 6.86 Chip2 T1D_6 T1D TGTGTGGACCCCATGGACACGGGCAGGAGAGCACTTACTTTT CVDPMDTGRRALTF TRAV12-1*01 TRAJ5*01 58.0 4424.0 TGTGCCAGCAATGACTACAGCAATGAGCAGTTCTTC CASNDYSNEQFF TRBV19*01 TRBJ2-1*01 3.0 273.0 CVDPMDTGRRALTF_CASNDYSNEQFF 1 6710 PGT-178 PGT 0.74 1480 PGT-178 245 6465 3 HomoSapiens PGT LLAGIGTVPI Naive T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*02:01 B2M MHCI -5721 chip0423_652969 5.82 12.63 Chip2 T1D_6 T1D TGTGCCGTCTCCCCCGATAATGCTGGCAACAACCGTAAGCTGATTTGG CAVSPDNAGNNRKLIW TRAV12-2*01 TRAJ38*01 39.0 1993.0 TGTGCCAGTATAACCGGGACAGCAACAGCTAACTATGGCTACACCTTC CASITGTATANYGYTF TRBV19*01 TRBJ1-2*01 107.0 3789.0 CAVSPDNAGNNRKLIW_CASITGTATANYGYTF 1 8685 M1 FLU 0.8 1250 NEG 239 8446 7 InfluenzaA M1 GILGFVFTL transitional T cells between effector and memory populations PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*02:01 B2M MHCI -5722 chip0423_835120 15.66 9.07 Chip2 T1D_5 T1D TGTGCAGCAACGGAAACCTCCTACGACAAGGTGATATTT CAATETSYDKVIF TRAV13-1*01 TRAJ50*01 30.0 1765.0 TGTGCCAGCAGTCCCCCGGGGAGAAATGAAAAACTGTTTTTT CASSPPGRNEKLFF TRBV12-3*01,TRBV12-4*01 TRBJ1-4*01 123.0 4389.0 CAATETSYDKVIF_CASSPPGRNEKLFF 34 3731 BZLF1-190-197 EBV 0.47 2156 NEG 276 3455 12 EBV BZLF1 RAKFKQLL effector T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-B*08:01 B2M MHCI -5723 chip0423_500231 15.37 11.51 Chip2 T1D_6 T1D TGTGCTGTCATTCAAACTGGGGCAAACAACCTCTTCTTT CAVIQTGANNLFF TRAV2*01 TRAJ36*01 1.0 17.0 TGTGCCAGCAGCGTTAGCGGGGCCCCCTACGAGCAGTACTTC CASSVSGAPYEQYF TRBV9*01 TRBJ2-7*01 23.0 1119.0 CAVIQTGANNLFF_CASSVSGAPYEQYF 2 3127 EBNA3A-193-201 EBV 0.64 1022 NEG 281 2846 12 EBV EBNA3A FLRGRAYGL effector T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-B*08:01 B2M MHCI -5724 chip0423_837966 7.4 12.2 Chip2 T1D_6 T1D TGTGCCAGCAGCTTAGGAGGACAGACAGAGACCCAGTACTTC CASSLGGQTETQYF TRBV13*01 TRBJ2-5*01 36.0 1812.0 _CASSLGGQTETQYF 1 5906 ROTA-VP6 ROTA 0.46 47 ROTA-VP6 233 5673 7 RotavirusA VP6 TLLANVTAV transitional T cells between effector and memory populations PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*02:01 B2M MHCI -5725 chip0423_602440 7.92 9.98 Chip2 T1D_5 T1D TGTGCAGCAGCGGAAACCTTCTACGACAAGGTGATATTT CAAAETFYDKVIF TRAV13-1*01 TRAJ50*01 9.0 1065.0 TGCATCCTGAGAGACTTACGGGTATGCACTCAACTTC CILRDL??cGYALNF TRAV26-2*01 TRAJ41*01 19.0 1136.0 0.61 TGTGCCAGCAGCCAATTGGGGGAGGCGAAGGAAGGCACTGAAGCTTTCTTT CASSQLGEAKEGTEAFF TRBV11-1*01 TRBJ1-1*01 101.0 4178.0 CAAAETFYDKVIF_CASSQLGEAKEGTEAFF 1 8234 BZLF1-190-197 EBV 0.5 2156 NEG 255 7979 8 EBV BZLF1 RAKFKQLL effector memory T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-B*08:01 B2M MHCI -5726 chip0423_45585 10.48 6.65 Chip2 T1D_4 T1D TGTGCTGCCCTTTTCTGGTGGCTACCATACGCTGATTTTT CAALFWtg??gcYHTLIF TRAV13-1*01 TRAJ4*01 4.0 194.0 TGTGCCAGCAGTTTATCAGTTAGCAGCTACACAGATACGCAGTATTTT CASSLSVSSYTDTQYF TRBV27*01 TRBJ2-3*01 123.0 5951.0 CAALFWtg??gcYHTLIF_CASSLSVSSYTDTQYF 1 11718 EBV-BRLF1 EBV 0.57 1264 EBV-BRLF1 279 11439 10 EBV BRLF1 YVLDHLIVV effector memory T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*02:01 B2M MHCI -5727 chip0423_719212 13.32 11.82 Chip2 T1D_5 T1D TGTGCCAGCCAACTAGCGGGAGGCACCGGGGAGCTGCTTTTT CASQLAGGTGELLF TRBV24-1*01 TRBJ2-2*01 41.0 1966.0 _CASQLAGGTGELLF 1 3670 BZLF1-190-197 EBV 0.62 2156 NEG 235 3435 9 EBV BZLF1 RAKFKQLL effector memory T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-B*08:01 B2M MHCI -5728 chip0423_406152 10.84 6.6 Chip2 T1D_6 T1D TGCATCCTCCCACTTGCTGGTGGTACTCGCTCTGGCAAGCTGACATTT CILPLAGGTRSGKLTF TRAV26-2*01 TRAJ52*01 37.0 1742.0 TGTGCCAGCAGCTTGGGACAGGCCTACGAGCAGTACTTC CASSLGQAYEQYF TRBV7-8*01 TRBJ2-7*01 5.0 184.0 CILPLAGGTRSGKLTF_CASSLGQAYEQYF 1 8772 EBNA3A-193-201 EBV 0.65 1022 EBNA3A-193-201 300 8472 10 EBV EBNA3A FLRGRAYGL effector memory T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-B*08:01 B2M MHCI -5729 chip0423_87184 11.17 6.81 Chip2 T1D_4 T1D TGTGCCGCTACTCACACCGACAAGCTCATCTTT CAATHTDKLIF TRAV27*01 TRAJ34*01 22.0 2079.0 TGTGCCAGCAGCTCGACAGGGGGCGGGGATCAGCCCCAGCATTTT CASSSTGGGDQPQHF TRBV7-9*01 TRBJ1-5*01 73.0 2910.0 CAATHTDKLIF_CASSSTGGGDQPQHF 1 7181 BZLF1-190-197 EBV 0.56 2156 NEG 264 6917 10 EBV BZLF1 RAKFKQLL effector memory T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-B*08:01 B2M MHCI -5730 chip0423_372703 10.46 7.07 Chip2 T1D_4 T1D TGCCTCGTGGGTGAGATTAACAATGACATGCGCTTT CLVGEINNDMRF TRAV4*01 TRAJ43*01 19.0 1948.0 TGTGCCAGCCGCTTCCTGGGGGGGGGGGGCACAGATACGCAGTATTTT CASRFLGGGGTDTQYF TRBV11-2*01 TRBJ2-3*01 2.0 86.0 CLVGEINNDMRF_CASRFLGGGGTDTQYF 1 6063 BZLF1-190-197 EBV 0.55 2156 BZLF1-190-197 295 5768 10 EBV BZLF1 RAKFKQLL effector memory T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-B*08:01 B2M MHCI -5731 chip0423_113168 11.25 7.77 Chip2 T1D_4 T1D TGTGCCAGCGGCTTAGGAGAGGGAGAGGGGGCCAGTGAGCAGTTCTTC CASGLGEGEGASEQFF TRBV7-6*01 TRBJ2-1*01 38.0 2271.0 _CASGLGEGEGASEQFF 1 6439 EBNA3A-193-201 EBV 0.57 1022 NEG 274 6165 10 EBV EBNA3A FLRGRAYGL effector memory T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-B*08:01 B2M MHCI -5732 chip0423_34424 8.79 8.13 Chip2 T1D_6 T1D TGCGCCAGCAATGACATTAGGGAGGGGCAGGGTGAAGCTTTCTTT CASNDIREGQGEAFF TRBV10-2*01 TRBJ1-1*01 49.0 1778.0 _CASNDIREGQGEAFF 1 12286 EBNA3A-158-166 EBV 0.84 444 EBNA3A-158-166 301 11985 8 EBV EBNA3A QAKWRLQTL effector memory T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-B*08:01 B2M MHCI -5733 chip0423_727904 12.36 6.16 Chip2 healthy_4 healthy TGCATCCTTCCCCTAGCTGGTGGTACTAACTATGGAAAGCTGACATTT CILPLAGGTNYGKLTF TRAV26-2*01 TRAJ52*01 18.0 590.0 TGTGCCAGCAGCTCCGGACAGGCCTACGAGCAGTACTTC CASSSGQAYEQYF TRBV7-8*01 TRBJ2-7*01 31.0 1849.0 CILPLAGGTNYGKLTF_CASSSGQAYEQYF 1 4721 EBNA3A-193-201 EBV 0.92 1022 NEG 274 4447 10 EBV EBNA3A FLRGRAYGL effector memory T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-B*08:01 B2M MHCI -5734 chip0423_482407 9.95 9.45 Chip2 T1D_4 T1D TGTGCTGTGAGTGATGGAGAAGGAGCCCAGAAGCTGGTATTT CAVSDGEGAQKLVF TRAV8-6*01 TRAJ54*01 60.0 2247.0 CTGTGCTGTGCGTGCTGGAGAAGGAGCCCCGAAGCTGGTATTT LCCACWR??aGAPKLVF TRAV8-6*01 TRAJ54*01 45.0 1762.0 0.34 TGTGCCAGCAGCTTAACGGTTCTGGCAGGTCCAAACACTGAAGCTTTCTTT CASSLTVLAGPNTEAFF TRBV7-3*01 TRBJ1-1*01 76.0 2016.0 CAVSDGEGAQKLVF_CASSLTVLAGPNTEAFF 44 3015 BZLF1-190-197 EBV 0.92 2156 NEG 217 2798 9 EBV BZLF1 RAKFKQLL effector memory T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-B*08:01 B2M MHCI -5735 chip0423_592731 11.58 6.72 Chip2 T1D_4 T1D TGTGCTGTGCGTGCTGGCGCCGGCGCCCCGCAGCTGGTCTTT CAVRAGAGAPQLVF TRAV8-6*01 TRAJ54*01 17.0 545.0 TGTGCCAGCAGCTTAACGGTTCTGGCAGGTCCAAACACTGAAGCTTTCTTC CASSLTVLAGPNTEAFF TRBV7-3*01 TRBJ1-1*01 40.0 1174.0 CAVRAGAGAPQLVF_CASSLTVLAGPNTEAFF 1 5700 BZLF1-190-197 EBV 0.87 2156 NEG 255 5445 10 EBV BZLF1 RAKFKQLL effector memory T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-B*08:01 B2M MHCI -5736 chip0423_267820 10.46 9.08 Chip2 T1D_6 T1D TGCATCCTCCCACTTGCTGGTGGTACTAGCTATGGAAAGCTGACATTT CILPLAGGTSYGKLTF TRAV26-2*01 TRAJ52*01 1.0 66.0 TGTGCCAGCAGCTTGGGACAGGCCTACGAGCAGTACTTC CASSLGQAYEQYF TRBV7-8*01 TRBJ2-7*01 11.0 590.0 CILPLAGGTSYGKLTF_CASSLGQAYEQYF 308 6746 EBNA3A-193-201 EBV 0.48 1022 NEG 250 6496 10 EBV EBNA3A FLRGRAYGL effector memory T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-B*08:01 B2M MHCI -5737 chip0423_225089 12.73 13.34 Chip2 T1D_4 T1D TGCATCGTCAGAGAGGGAGGAGGTGCTGACGGACTCACCTTT CIVREGGGADGLTF TRAV26-1*01 TRAJ45*01 1.0 37.0 TGTGCCAGCAGCTTAGCGGTCGGAGAAGGGCCCCAGCTTTTT CASSLAVGEGPQLF TRBV7-9*01 TRBJ1-5*01 32.0 1621.0 CIVREGGGADGLTF_CASSLAVGEGPQLF 1 2972 BZLF1-190-197 EBV 0.82 2156 NEG 270 2702 11 EBV BZLF1 RAKFKQLL effector T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-B*08:01 B2M MHCI -5738 chip0423_476510 13.4 8.01 Chip2 T1D_4 T1D TGTGCCAGCAGCTTAGCGGTCGGAGAAGGGCCCCAGCATTTT CASSLAVGEGPQHF TRBV7-9*01 TRBJ1-5*01 9.0 348.0 _CASSLAVGEGPQHF 113 3338 BZLF1-190-197 EBV 0.89 2156 BZLF1-190-197 272 3066 10 EBV BZLF1 RAKFKQLL effector memory T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-B*08:01 B2M MHCI -5739 chip0423_765092 12.74 6.49 Chip2 T1D_4 T1D TGTGCTGTCAATTCAGGAAACACACCTCTTGTCTTT CAVNSGNTPLVF TRAV1-2*01 TRAJ29*01 21.0 1225.0 TGTGCCAGCAGCCAAGTCAACAACCCGGGGGATGGCTACACCTTC CASSQVNNPGDGYTF TRBV14*01 TRBJ1-2*01 22.0 697.0 CAVNSGNTPLVF_CASSQVNNPGDGYTF 31 7221 EBNA3A-158-166 EBV 0.52 444 NEG 297 6924 10 EBV EBNA3A QAKWRLQTL effector memory T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-B*08:01 B2M MHCI -5740 chip0423_17744 12.6 6.43 Chip2 T1D_6 T1D TGCATCCTCCCACTTGCTGGTGGTACTAGCTATGGAAAGCTGACATTT CILPLAGGTSYGKLTF TRAV26-2*01 TRAJ52*01 39.0 2018.0 CILPLAGGTSYGKLTF_ 55 5165 EBNA3A-193-201 EBV 0.88 1022 NEG 297 4868 10 EBV EBNA3A FLRGRAYGL effector memory T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-B*08:01 B2M MHCI -5741 chip0423_856882 13.46 6.98 Chip2 T1D_5 T1D TGTGCTAGTGGTCCGGACATATCCTACTCCTACGAGCAGTACTTC CASGPDISYSYEQYF TRBV12-5*01 TRBJ2-7*01 47.0 2660.0 _CASGPDISYSYEQYF 10 2970 BZLF1-190-197 EBV 0.75 2156 NEG 294 2676 10 EBV BZLF1 RAKFKQLL effector memory T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-B*08:01 B2M MHCI -5742 chip0423_184618 10.4 7.0 Chip2 T1D_4 T1D TGTGCCGGTTCTCGCACCGCCCCGCTCATCTTT CAGSRTAPLIF TRAV27*01 TRAJ34*01 41.0 2654.0 TGTGCCAGCAGCTCGACAGGGGGCGGGGATCAGCCCCAGCATTTT CASSSTGGGDQPQHF TRBV7-9*01 TRBJ1-5*01 28.0 1035.0 CAGSRTAPLIF_CASSSTGGGDQPQHF 1 5417 BZLF1-190-197 EBV 0.54 2156 NEG 247 5170 10 EBV BZLF1 RAKFKQLL effector memory T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-B*08:01 B2M MHCI -5743 chip0423_861708 -1.55 11.67 Chip2 T1D_4 T1D TGTGCCGTGGGGGGCTATGGTCAGAATTTTGTCTTT CAVGGYGQNFVF TRAV12-2*01 TRAJ26*01 23.0 2013.0 TGTGCCAGCAGTTTCACTAGCGGGGGTCTTTACGAGCAGTACTTC CASSFTSGGLYEQYF TRBV28*01 TRBJ2-7*01 19.0 1042.0 CAVGGYGQNFVF_CASSFTSGGLYEQYF 1 5008 PGT-178 PGT 0.58 1480 NEG 211 4797 3 HomoSapiens PGT LLAGIGTVPI Naive T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*02:01 B2M MHCI -5744 chip0423_781215 9.67 7.3 Chip2 T1D_4 T1D TGTGGAGCAGACGCAACCTCAGGAACCTACAAATACATCTTT CGADATSGTYKYIF TRAV34*01 TRAJ40*01 2.0 77.0 TGCAGCGTGGGGTCGGGGGAGGGCTACGAGCAGTACTTC CSVGSGEGYEQYF TRBV29-1*01 TRBJ2-7*01 23.0 2255.0 CGADATSGTYKYIF_CSVGSGEGYEQYF 6 5298 BZLF1-190-197 EBV 0.85 2156 BZLF1-190-197 266 5032 10 EBV BZLF1 RAKFKQLL effector memory T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-B*08:01 B2M MHCI -5745 chip0423_526927 14.23 7.87 Chip2 T1D_6 T1D TGCAGCGCCGGCAGGGACGGGACTAATGAAAAACTGTTTTTT CSAGRDGTNEKLFF TRBV29-1*01 TRBJ1-4*01 84.0 4648.0 _CSAGRDGTNEKLFF 159 3722 EBV-BLMF1 EBV 0.5 2531 NEG 280 3442 10 EBV BLMF1 GLCTLVAML effector memory T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*02:01 B2M MHCI -5746 chip0423_160337 12.6 8.08 Chip2 T1D_4 T1D TGCATCCTCCCTCTTGCTGGTGGGACTAGCTTTGGGGTGCTGCCATTT CILPLAGGTSFGVLPF TRAV26-2*01 TRAJ52*01 10.0 260.0 CILPLAGGTSFGVLPF_ 1 3687 EBNA3A-193-201 EBV 0.53 1022 NEG 288 3399 10 EBV EBNA3A FLRGRAYGL effector memory T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-B*08:01 B2M MHCI -5747 chip0423_487461 6.06 12.07 Chip2 T1D_6 T1D TGTGCAGGGCAAACTGGCAACACAGGCAAACTAATCTTT CAGQTGNTGKLIF TRAV27*01 TRAJ37*01 2.0 17.0 CAGQTGNTGKLIF_ 1 8186 M1 FLU 0.49 1250 M1 262 7924 7 InfluenzaA M1 GILGFVFTL transitional T cells between effector and memory populations PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*02:01 B2M MHCI -5748 chip0423_675710 13.3 7.47 Chip2 T1D_6 T1D TGCAGCGCCGGCAGGGACGGGACTAATGAAAAACTGTTTTTT CSAGRDGTNEKLFF TRBV29-1*01 TRBJ1-4*01 81.0 5201.0 _CSAGRDGTNEKLFF 159 3551 EBV-BLMF1 EBV 0.5 2531 NEG 297 3254 10 EBV BLMF1 GLCTLVAML effector memory T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*02:01 B2M MHCI -5749 chip0423_512267 9.66 9.7 Chip2 T1D_6 T1D TGCATCGCCGTTACCTCGTCCCGGTAACCAGTTCTGTTTT CIAVTStc??ccGNQFCF TRAV26-1*01 TRAJ49*01 25.0 2040.0 TGCAGCGCCGGCAGGGACGGGACTAATGAAAAACTGTTTTTT CSAGRDGTNEKLFF TRBV29-1*01 TRBJ1-4*01 61.0 3304.0 CIAVTStc??ccGNQFCF_CSAGRDGTNEKLFF 1 7718 EBV-BLMF1 EBV 0.47 2531 NEG 272 7446 8 EBV BLMF1 GLCTLVAML effector memory T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*02:01 B2M MHCI -5750 chip0423_864389 10.87 6.44 Chip2 tet_neg TGTGCCCCTTCTCTGAATTCTGGGGGTTACCAGAAAGTTACCTTT CAPSLNSGGYQKVTF TRAV13-1*01 TRAJ13*01 3.0 93.0 TGTGCCAGCAGTGTAGTAGGGGGCGACTATGGCTACACCTTC CASSVVGGDYGYTF TRBV2*01 TRBJ1-2*01 23.0 1238.0 CAPSLNSGGYQKVTF_CASSVVGGDYGYTF 5 6719 EBNA3A-193-201 EBV 0.44 1022 NEG 267 6452 10 EBV EBNA3A FLRGRAYGL effector memory T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-B*08:01 B2M MHCI -5751 chip0423_861052 15.31 10.53 Chip2 T1D_5 T1D TGTGCAGCAAAAGAAACCTCCTACGACAAGGTGATATTT CAAKETSYDKVIF TRAV13-1*01 TRAJ50*01 29.0 2107.0 TGTGCCAGCAGCTTATTAGGACGATCGAACACTGAAGCTTTCTTT CASSLLGRSNTEAFF TRBV7-9*01 TRBJ1-1*01 44.0 1383.0 CAAKETSYDKVIF_CASSLLGRSNTEAFF 13 4752 BZLF1-190-197 EBV 0.42 2156 NEG 248 4504 12 EBV BZLF1 RAKFKQLL effector T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-B*08:01 B2M MHCI -5752 chip0423_170085 14.59 10.31 Chip2 T1D_5 T1D TGTGCCAGCCAACTAGCGGGAGGCACCGGGGAGCTGTTTTTT CASQLAGGTGELFF TRBV24-1*01 TRBJ2-2*01 20.0 1079.0 _CASQLAGGTGELFF 69 5411 BZLF1-190-197 EBV 0.62 2156 NEG 234 5177 12 EBV BZLF1 RAKFKQLL effector T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-B*08:01 B2M MHCI -5753 chip0423_197232 5.93 11.77 Chip2 T1D_6 T1D TGTGCAATGAGCGCGGAGTACAAGCTCAGCTTT CAMSAEYKLSF TRAV12-3*01 TRAJ20*01 63.0 7727.0 TGTGCCAGTAGTATGGACCCCGGGACAGGGGAATACCAGCCCCAGCATTTT CASSMDPGTGEYQPQHF TRBV19*01 TRBJ1-5*01 104.0 2550.0 CAMSAEYKLSF_CASSMDPGTGEYQPQHF 1 10108 PGT-178 PGT 0.53 1480 PGT-178 252 9856 7 HomoSapiens PGT LLAGIGTVPI transitional T cells between effector and memory populations PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*02:01 B2M MHCI -5754 chip0423_556119 8.33 9.02 Chip2 T1D_4 T1D TGTGCTGTGAGTGATGGAGAAGGCGCCCAGAAGCTGGTATTT CAVSDGEGAQKLVF TRAV8-6*01 TRAJ54*01 90.0 2773.0 TGTGCCAGCAGCTTAACGGTTCTGGCAGGTCCAAACACTGAAGCTTTCTTT CASSLTVLAGPNTEAFF TRBV7-3*01 TRBJ1-1*01 52.0 2164.0 CAVSDGEGAQKLVF_CASSLTVLAGPNTEAFF 44 8128 BZLF1-190-197 EBV 0.88 2156 BZLF1-190-197 259 7869 8 EBV BZLF1 RAKFKQLL effector memory T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-B*08:01 B2M MHCI -5755 chip0423_339619 11.26 6.31 Chip2 T1D_6 T1D TGCATCCTCCCACTTGCTGGTGGTACTAGCTATGGAAAGCTGACATTT CILPLAGGTSYGKLTF TRAV26-2*01 TRAJ52*01 4.0 109.0 TGTGCCAGCAGCTTGGGACAGGCCTACGAGCAGTACTTC CASSLGQAYEQYF TRBV7-8*01 TRBJ2-7*01 85.0 4523.0 CILPLAGGTSYGKLTF_CASSLGQAYEQYF 308 6839 EBNA3A-193-201 EBV 0.93 1022 NEG 274 6565 10 EBV EBNA3A FLRGRAYGL effector memory T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-B*08:01 B2M MHCI -5756 chip0423_211832 6.16 10.2 Chip2 T1D_5 T1D TGTGTGGTGAACTCGTTCAGAGACCAGGCAGGAACTGCTCTGATCTTT CVVNSFRDQAGTALIF TRAV12-1*01 TRAJ15*01 60.0 1938.0 TGTGCCAGCCTCCGTCTAGGGGCTAGCGGGGACTCAGATACGCAGTATTTT CASLRLGASGDSDTQYF TRBV11-1*01 TRBJ2-3*01 25.0 1032.0 CVVNSFRDQAGTALIF_CASLRLGASGDSDTQYF 1 5788 BZLF1-190-197 EBV 0.8 2156 NEG 224 5564 6 EBV BZLF1 RAKFKQLL central memory T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-B*08:01 B2M MHCI -5757 chip0423_331114 13.12 6.68 Chip2 T1D_4 T1D TGTGCCAGCAGCTTAGCGGTCGGAGAAGGGCCCCAGCATTTT CASSLAVGEGPQHF TRBV7-9*01 TRBJ1-5*01 14.0 575.0 _CASSLAVGEGPQHF 113 5726 BZLF1-190-197 EBV 0.77 2156 BZLF1-190-197 249 5477 10 EBV BZLF1 RAKFKQLL effector memory T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-B*08:01 B2M MHCI -5758 chip0423_593793 11.11 7.12 Chip2 T1D_5 T1D TGTGCAGAGATGGAAACCTCCTACGACAAGGTGATATTT CAEMETSYDKVIF TRAV13-2*01 TRAJ50*01 19.0 1508.0 TGTGCCAGCACCCACCCCCAGGATGTGAACACCGGGGAGCTGTTTTTT CASTHPQDVNTGELFF TRBV7-9*01 TRBJ2-2*01 100.0 3618.0 CAEMETSYDKVIF_CASTHPQDVNTGELFF 8 5603 BZLF1-190-197 EBV 0.7 2156 BZLF1-190-197 276 5327 10 EBV BZLF1 RAKFKQLL effector memory T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-B*08:01 B2M MHCI -5759 chip0423_216238 14.71 8.59 Chip2 T1D_6 T1D TGTGCCAGCAGCTTGGGACAGGCCTACGAGCAGTACTCC CASSLGQAYEQYS TRBV7-8*01 TRBJ2-7*01 15.0 857.0 _CASSLGQAYEQYS 3 3975 EBNA3A-193-201 EBV 0.67 1022 NEG 253 3722 12 EBV EBNA3A FLRGRAYGL effector T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-B*08:01 B2M MHCI -5760 chip0423_235240 14.14 10.9 Chip2 T1D_5 T1D TGTGCAGCTCAGGAAACCTCCTACGACAAGGTGATATTT CAAQETSYDKVIF TRAV13-1*01 TRAJ50*01 35.0 4043.0 CAAQETSYDKVIF_ 6 2830 BZLF1-190-197 EBV 0.7 2156 NEG 214 2616 12 EBV BZLF1 RAKFKQLL effector T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-B*08:01 B2M MHCI -5761 chip0423_116196 7.73 8.59 Chip2 healthy_4 healthy TGTGCTACTCCTACGGTGTCTACTGGAGCCAATAGTAAGCTGACATTT CATPTVSTGANSKLTF TRAV17*01 TRAJ56*01 96.0 2727.0 TGTGCCAGTAGTATGATGGGTTCGGGCTACAATGAGCAGTTCTTC CASSMMGSGYNEQFF TRBV19*01 TRBJ2-1*01 10.0 385.0 CATPTVSTGANSKLTF_CASSMMGSGYNEQFF 6 10141 M1 FLU 0.57 1250 NEG 276 9865 8 InfluenzaA M1 GILGFVFTL effector memory T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*02:01 B2M MHCI -5762 chip0423_617653 6.38 10.06 Chip2 T1D_4 T1D TGTGCCAGCAGTTTGAACCCCGTTCTTCGGTTAGATACGCAGTATTTT CASSLNPVLRLDTQYF TRBV28*01 TRBJ2-3*01 7.0 260.0 _CASSLNPVLRLDTQYF 6 7224 EBNA3A-158-166 EBV 0.58 444 NEG 256 6968 6 EBV EBNA3A QAKWRLQTL central memory T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-B*08:01 B2M MHCI -5763 chip0423_852183 11.3 6.67 Chip2 T1D_6 T1D _ 6746 5444 LMP2A-CPL EBV 0.77 44 NEG 235 5209 10 EBV LMP2A CPLSKILL effector memory T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-B*08:01 B2M MHCI -5764 chip0423_13242 13.4 11.37 Chip2 T1D_5 T1D TGTGCTGCGGGCCGACCTATAACACCGACAACCTCATCTTT CAAGRPat?NTDNLIF TRAV20*01 TRAJ34*01 9.0 485.0 TGTGCCAGCAGTCCCGACGGATCCACCGGGGAGCTGTTTTTT CASSPDGSTGELFF TRBV12-3*01,TRBV12-4*01 TRBJ2-2*01 56.0 2851.0 CAAGRPat?NTDNLIF_CASSPDGSTGELFF 1 2561 BZLF1-190-197 EBV 0.95 2156 BZLF1-190-197 263 2298 10 EBV BZLF1 RAKFKQLL effector memory T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-B*08:01 B2M MHCI -5765 chip0423_248073 16.08 9.85 Chip2 T1D_5 T1D TGTGCAGCCCCGGATGCCTCCTACGACAAGGTGATATTT CAAPDASYDKVIF TRAV13-1*01 TRAJ50*01 6.0 370.0 TGTCCTCCACATCCCCGTGAGTAAAGCTTATATTC CPPHPcg?*VKLIF TRAV8-6*01 TRAJ23*01 6.0 363.0 0.38 TGTGCCAGCAGTCCCCCCGGGGCCAACGTCCTGACTTTC CASSPPGANVLTF TRBV12-3*01,TRBV12-4*01 TRBJ2-6*01 92.0 7007.0 CAAPDASYDKVIF_CASSPPGANVLTF 1 2831 BZLF1-190-197 EBV 0.57 2156 NEG 258 2573 12 EBV BZLF1 RAKFKQLL effector T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-B*08:01 B2M MHCI -5766 chip0423_70820 11.44 7.0 Chip2 T1D_6 T1D TGCATCCTCCCACTTGCTGGTGGTCCTCGCTATGGAACGCTGACATTT CILPLAGGPRYGTLTF TRAV26-2*01 TRAJ52*01 35.0 925.0 CILPLAGGPRYGTLTF_ 1 6074 EBNA3A-193-201 EBV 0.52 1022 NEG 292 5782 10 EBV EBNA3A FLRGRAYGL effector memory T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-B*08:01 B2M MHCI -5767 chip0423_113861 15.08 11.34 Chip2 T1D_5 T1D TGTGCAGCGGCGGAAACCTCCTACGACAAGGTGATATTT CAAAETSYDKVIF TRAV13-1*01 TRAJ50*01 16.0 1497.0 TGTGCCAGCCAACTAGCGGGAGGCACCGGGGAGCTGTTTTTT CASQLAGGTGELFF TRBV24-1*01 TRBJ2-2*01 3.0 125.0 CAAAETSYDKVIF_CASQLAGGTGELFF 131 3134 BZLF1-190-197 EBV 0.5 2156 NEG 223 2911 12 EBV BZLF1 RAKFKQLL effector T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-B*08:01 B2M MHCI -5768 chip0423_209894 7.05 12.66 Chip2 T1D_6 T1D TGTGCTGTGAGAGAATATGGAAACAAACTGGTCTTT CAVREYGNKLVF TRAV1-2*01 TRAJ47*01 23.0 1433.0 TGTGCCAGCAGCTTAGCGGGTCGTGAGGGTACGCAGTATTTT CASSLAGREGTQYF TRBV11-3*01 TRBJ2-3*01 19.0 815.0 CAVREYGNKLVF_CASSLAGREGTQYF 7 5454 NP380-388 FLU 0.42 60 NEG 241 5213 7 InfluenzaA NP ELRSRYWAI transitional T cells between effector and memory populations PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-B*08:01 B2M MHCI -5769 chip0423_112404 10.95 7.23 Chip2 T1D_6 T1D TGCATCCTCCCACTTGCTGGTGGTACTAGCTATGGAAAGCTGACATTT CILPLAGGTSYGKLTF TRAV26-2*01 TRAJ52*01 37.0 2246.0 TGTGCAGCAAGCAAGATAGAGGAGGAGGTGCTGACGGACTCACCTTT CAASKIEga?GGADGLTF TRAV23/DV6*01 TRAJ45*01 46.0 2211.0 0.47 TGTGCCAGCAGCTTGGGACAGGCCTACGAGCAGTACTTC CASSLGQAYEQYF TRBV7-8*01 TRBJ2-7*01 18.0 1068.0 CILPLAGGTSYGKLTF_CASSLGQAYEQYF 308 5108 EBNA3A-193-201 EBV 0.95 1022 EBNA3A-193-201 245 4863 10 EBV EBNA3A FLRGRAYGL effector memory T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-B*08:01 B2M MHCI -5770 chip0423_467112 11.75 7.12 Chip2 T1D_6 T1D TGCATCCTCCCACTTGCTGGTGGTACTAGCTATGGAAAGCTGACATTT CILPLAGGTSYGKLTF TRAV26-2*01 TRAJ52*01 75.0 1674.0 TGTGCCAGCAGCTTGGGACAGGCCTACGAGCAGTACTTC CASSLGQAYEQYF TRBV7-8*01 TRBJ2-7*01 25.0 809.0 CILPLAGGTSYGKLTF_CASSLGQAYEQYF 308 6087 EBNA3A-193-201 EBV 0.87 1022 EBNA3A-193-201 297 5790 10 EBV EBNA3A FLRGRAYGL effector memory T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-B*08:01 B2M MHCI -5771 chip0423_177948 11.38 6.65 Chip2 T1D_6 T1D TGTGCTGTGAGTGATCGGGAATATGGAAACAAACTGGTCTTT CAVSDREYGNKLVF TRAV8-6*01 TRAJ47*01 26.0 998.0 TGTGCCAGCAGCTTAATTGTGGCTAGCGGGGACAATGAGCAGTTCTTC CASSLIVASGDNEQFF TRBV7-3*01 TRBJ2-1*01 24.0 1453.0 CAVSDREYGNKLVF_CASSLIVASGDNEQFF 1 7510 BZLF1-190-197 EBV 0.44 2156 NEG 292 7218 10 EBV BZLF1 RAKFKQLL effector memory T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-B*08:01 B2M MHCI -5772 chip0423_677950 10.99 6.98 Chip2 T1D_6 T1D TGCATCCTCCCACTTGCTGGTGGTACTAGCTATGGAAAGCTGACATTT CILPLAGGTSYGKLTF TRAV26-2*01 TRAJ52*01 38.0 1496.0 TGTGCAGCAAGCAAGATAGAGGAGGAGGTGCTGACGGTCTCACCTTT CAASKIEga?GGADGLTF TRAV23/DV6*01 TRAJ45*01 46.0 2074.0 0.43 TGTGCCAGCAGCTTGGGACAGGCCTACGAGCAGTACTTC CASSLGQAYEQYF TRBV7-8*01 TRBJ2-7*01 12.0 579.0 CILPLAGGTSYGKLTF_CASSLGQAYEQYF 308 6091 EBNA3A-193-201 EBV 0.8 1022 EBNA3A-193-201 298 5793 10 EBV EBNA3A FLRGRAYGL effector memory T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-B*08:01 B2M MHCI -5773 chip0423_81864 5.8 12.48 Chip2 T1D_6 T1D TGTGCTCTGAGTGAGGCTATTGGGTCAGGAACCTACAAATACATCTTT CALSEAIGSGTYKYIF TRAV19*01 TRAJ40*01 65.0 2732.0 TGCGCCAGCAGCCTAGGACAGGGAGGTAATGAAAAACTGTTTTTT CASSLGQGGNEKLFF TRBV4-1*01 TRBJ1-4*01 47.0 1822.0 CALSEAIGSGTYKYIF_CASSLGQGGNEKLFF 1 7484 NP140-148 FLU 0.6 102 NEG 256 7228 7 InfluenzaA NP HSNLNDATY transitional T cells between effector and memory populations PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*01:01 B2M MHCI -5774 chip0423_65983 12.47 6.26 Chip2 T1D_4 T1D TGTGCTGTCAATTCAGGAAACACACCTCTTGTCTTC CAVNSGNTPLVF TRAV1-2*01 TRAJ29*01 12.0 572.0 TGTGCCAGCAGCCAAGTCAACAACCCGGGGGATGGCTACACCTTC CASSQVNNPGDGYTF TRBV14*01 TRBJ1-2*01 9.0 293.0 CAVNSGNTPLVF_CASSQVNNPGDGYTF 31 7857 EBNA3A-158-166 EBV 1.0 444 NEG 318 7539 10 EBV EBNA3A QAKWRLQTL effector memory T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-B*08:01 B2M MHCI -5775 chip0423_329784 11.18 10.84 Chip2 T1D_6 T1D TGTGCAGAGAATACCCGAAACTTTGGAAATGAGAAATTAACCTTT CAENTRNFGNEKLTF TRAV13-2*01 TRAJ48*01 73.0 1724.0 TGCGCCAGCAGCCAAGTTCGCGGCGGGTACGAGCAGTACTTC CASSQVRGGYEQYF TRBV3-1*01 TRBJ2-7*01 27.0 1778.0 CAENTRNFGNEKLTF_CASSQVRGGYEQYF 2 4611 BZLF1-190-197 EBV 0.7 2156 NEG 218 4393 9 EBV BZLF1 RAKFKQLL effector memory T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-B*08:01 B2M MHCI -5776 chip0423_775601 14.82 8.71 Chip2 T1D_6 T1D TGTGCAGCGAGGGAAACCTCCTACGACAAGGTGATATTT CAARETSYDKVIF TRAV13-1*01 TRAJ50*01 2.0 15.0 TGTGCCAGCAGCGTTAGCGGGGCCCCCTACGAGCAGTACTTC CASSVSGAPYEQYF TRBV9*01 TRBJ2-7*01 10.0 860.0 CAARETSYDKVIF_CASSVSGAPYEQYF 1 3149 EBNA3A-193-201 EBV 0.67 1022 NEG 277 2872 12 EBV EBNA3A FLRGRAYGL effector T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-B*08:01 B2M MHCI -5777 chip0423_647087 13.52 9.1 Chip2 T1D_5 T1D TGTGCCAGCAGCTCACTAGGGACAGGGGACACTGAAGCTTTCTTT CASSSLGTGDTEAFF TRBV7-9*01 TRBJ1-1*01 41.0 1076.0 _CASSSLGTGDTEAFF 6 7711 BZLF1-190-197 EBV 0.6 2156 NEG 263 7448 12 EBV BZLF1 RAKFKQLL effector T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-B*08:01 B2M MHCI -5778 chip0423_110887 6.62 11.71 Chip2 T1D_6 T1D TGTGCCAGTAGTATCCGGTCAGCCTACGAGCAGTACTTC CASSIRSAYEQYF TRBV19*01 TRBJ2-7*01 14.0 620.0 _CASSIRSAYEQYF 11 4870 M1 FLU 0.4 1250 NEG 239 4631 7 InfluenzaA M1 GILGFVFTL transitional T cells between effector and memory populations PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*02:01 B2M MHCI -5779 chip0423_188309 10.39 6.88 Chip2 T1D_4 T1D TGCATCCTGCCCCTTGCTGGTGGTACTAGCTATGGAAAGCTGACTTTT CILPLAGGTSYGKLTF TRAV26-2*01 TRAJ52*01 35.0 1976.0 TGTGCCAGCAGCTTAGGGCAGGCTTACGAGCAGTACTTC CASSLGQAYEQYF TRBV7-8*01 TRBJ2-7*01 40.0 2119.0 CILPLAGGTSYGKLTF_CASSLGQAYEQYF 308 5496 EBNA3A-193-201 EBV 0.71 1022 EBNA3A-193-201 290 5206 10 EBV EBNA3A FLRGRAYGL effector memory T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-B*08:01 B2M MHCI -5780 chip0423_38476 5.57 8.55 Chip2 T1D_4 T1D TGTGCCGTGAACCGCTTCTTGGCCGACAGAGGCTCAACCCTGGGGAGGCTATACTTT CAVNRFLADRGSTLGRLYF TRAV12-2*01 TRAJ18*01 18.0 241.0 TGCGCCAGCAGCCAAGAAGTCACAGATACGCAGTATTTT CASSQEVTDTQYF TRBV4-3*01 TRBJ2-3*01 153.0 6751.0 CAVNRFLADRGSTLGRLYF_CASSQEVTDTQYF 4 10541 EBV-LMP1-1 EBV 0.77 237 EBV-LMP1-1 252 10289 6 EBV LMP1 YLLEMLWRL central memory T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*02:01 B2M MHCI -5781 chip0423_61002 9.41 7.69 Chip2 T1D_4 T1D TGCATCGTCAGAGTCGTGTGTACGGCACTGCCAGTAAACTCACCTTT CIVRVVCac?GTASKLTF TRAV26-1*01 TRAJ44*01 1.0 86.0 TGTGCCAGCAGCTTAGCGGTCGGAGAAGGGCCCCAGCATTTT CASSLAVGEGPQHF TRBV7-9*01 TRBJ1-5*01 63.0 2511.0 CIVRVVCac?GTASKLTF_CASSLAVGEGPQHF 3 5209 BZLF1-190-197 EBV 0.8 2156 BZLF1-190-197 271 4938 8 EBV BZLF1 RAKFKQLL effector memory T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-B*08:01 B2M MHCI -5782 chip0423_835619 12.54 7.51 Chip2 T1D_4 T1D TGCATCCTGCCTCTTGCTGGTGGTACTAGCTATGGAAAGCTGACATTT CILPLAGGTSYGKLTF TRAV26-2*01 TRAJ52*01 82.0 3538.0 TGTGCCAGCAGCTTAGGGCAAGCCTACGAGCAGTACTTC CASSLGQAYEQYF TRBV7-8*01 TRBJ2-7*01 20.0 1137.0 CILPLAGGTSYGKLTF_CASSLGQAYEQYF 308 3638 EBNA3A-193-201 EBV 0.9 1022 NEG 304 3334 10 EBV EBNA3A FLRGRAYGL effector memory T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-B*08:01 B2M MHCI -5783 chip0423_527753 8.92 7.5 Chip2 T1D_4 T1D TGTGCTGAGACAGATCAATAACGAGCCCAGAAGCTCGTATTT CAETDQ*RAQKLVF TRAV8-6*01 TRAJ54*01 2.0 200.0 CAETDQ*RAQKLVF_ 1 12827 BZLF1-190-197 EBV 0.58 2156 BZLF1-190-197 307 12520 8 EBV BZLF1 RAKFKQLL effector memory T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-B*08:01 B2M MHCI -5784 chip0423_110843 -1.72 9.38 Chip2 T1D_6 T1D TGTGCCGTGACCTCTTGGACCGACAAGCTCATCTTT CAVTSWTDKLIF TRAV12-2*01 TRAJ34*01 19.0 1692.0 TGTGCCAGCAGCGTCGGGGGGAACACTGAAGCTTTCTTT CASSVGGNTEAFF TRBV9*01 TRBJ1-1*01 2.0 55.0 CAVTSWTDKLIF_CASSVGGNTEAFF 1 7630 MART1-A28L MART1 0.66 84 MART1-A28L 250 7380 3 HomoSapiens MART1 ALGIGILTV Naive T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*02:01 B2M MHCI -5785 chip0423_189609 15.74 8.93 Chip2 T1D_4 T1D TGCATCGTCAGAGAGGGAGGAGGTGCTGACGGACTCACCTTT CIVREGGGADGLTF TRAV26-1*01 TRAJ45*01 22.0 1790.0 TGTGCCAGCAGCTTAGCGGTCGGAGAAGGGCCCCAGCATTTT CASSLAVGEGPQHF TRBV7-9*01 TRBJ1-5*01 75.0 2539.0 CIVREGGGADGLTF_CASSLAVGEGPQHF 68 4753 BZLF1-190-197 EBV 0.79 2156 BZLF1-190-197 278 4475 12 EBV BZLF1 RAKFKQLL effector T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-B*08:01 B2M MHCI -5786 chip0423_44666 6.62 11.1 Chip2 T1D_6 T1D TGTGCCTCCCAAGGAGGAAGCCAAGGAAATCTCATCTTT CASQGGSQGNLIF TRAV20*01 TRAJ42*01 66.0 4123.0 TGTGCCAGCAGCTTAGGAGGACAGACAGAGACCCAGTACTTC CASSLGGQTETQYF TRBV13*01 TRBJ2-5*01 54.0 3618.0 CASQGGSQGNLIF_CASSLGGQTETQYF 13 8247 ROTA-VP6 ROTA 0.61 47 ROTA-VP6 230 8017 7 RotavirusA VP6 TLLANVTAV transitional T cells between effector and memory populations PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*02:01 B2M MHCI -5787 chip0423_41041 11.95 10.65 Chip2 T1D_4 T1D TGCATCGTCAGAGAGGGAGGAGGTGCTGACGGGCTCACCTTT CIVREGGGADGLTF TRAV26-1*01 TRAJ45*01 55.0 3362.0 TGTGCCAGCAGCTTAGCGGTCGGAGAAGGGCCCCAGCATTTT CASSLAVGEGPQHF TRBV7-9*01 TRBJ1-5*01 37.0 1385.0 CIVREGGGADGLTF_CASSLAVGEGPQHF 68 6077 BZLF1-190-197 EBV 0.86 2156 BZLF1-190-197 245 5832 9 EBV BZLF1 RAKFKQLL effector memory T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-B*08:01 B2M MHCI -5788 chip0423_95311 15.8 9.88 Chip2 T1D_6 T1D TGCCTCCTCCCTCTTGCTGGTGGTACTTGCTATGGAAAGCTGACATTT CLLPLAGGTCYGKLTF TRAV26-2*01 TRAJ52*01 30.0 1283.0 TGTGCCAGCAGCTTGGGACAGGCCTACGAGCAGTACTTC CASSLGQAYEQYF TRBV7-8*01 TRBJ2-7*01 16.0 982.0 CLLPLAGGTCYGKLTF_CASSLGQAYEQYF 1 5821 EBNA3A-193-201 EBV 1.0 1022 NEG 234 5587 12 EBV EBNA3A FLRGRAYGL effector T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-B*08:01 B2M MHCI -5789 chip0423_680174 8.16 9.64 Chip2 T1D_5 T1D TGTGCAGCAAGTGAAACCTCCTACGACAAGGTGATATTT CAASETSYDKVIF TRAV13-1*01 TRAJ50*01 5.0 454.0 TGTGCCAGCAGCTGGCTCGGGGATCGGTATAATTCACCCCTCCACTTT CASSWLGDRYNSPLHF TRBV7-9*01 TRBJ1-6*01 2.0 48.0 CAASETSYDKVIF_CASSWLGDRYNSPLHF 65 7377 BZLF1-190-197 EBV 0.52 2156 NEG 248 7129 8 EBV BZLF1 RAKFKQLL effector memory T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-B*08:01 B2M MHCI -5790 chip0423_220239 13.78 10.41 Chip2 T1D_4 T1D TGCATCGTCAGAGTCGTGTGTACGGCACTGCCAGTAAACTCACCTTT CIVRVVCac?GTASKLTF TRAV26-1*01 TRAJ44*01 23.0 2027.0 TGTGCCAGCAGCTTAGCGGTCGGAGAAGGGCCCCAGCATTTT CASSLAVGEGPQHF TRBV7-9*01 TRBJ1-5*01 49.0 1527.0 CIVRVVCac?GTASKLTF_CASSLAVGEGPQHF 3 3821 BZLF1-190-197 EBV 0.71 2156 BZLF1-190-197 275 3546 12 EBV BZLF1 RAKFKQLL effector T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-B*08:01 B2M MHCI -5791 chip0423_611581 10.72 7.95 Chip2 T1D_6 T1D TGCATCCTCCCACTTGCTGGTGGTACTAGCTATGGAAAGCTGACATTT CILPLAGGTSYGKLTF TRAV26-2*01 TRAJ52*01 1.0 19.0 TGTGCCAGCAGCTTGGGACAGGCCTACGAGCAGTACTTC CASSLGQAYEQYF TRBV7-8*01 TRBJ2-7*01 10.0 510.0 CILPLAGGTSYGKLTF_CASSLGQAYEQYF 308 5645 EBNA3A-193-201 EBV 0.65 1022 NEG 263 5382 10 EBV EBNA3A FLRGRAYGL effector memory T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-B*08:01 B2M MHCI -5792 chip0423_374781 9.06 7.56 Chip2 T1D_5 T1D TGTGCAGCATCGGAAACCTCCTACGACAAGGTGATATTT CAASETSYDKVIF TRAV13-1*01 TRAJ50*01 56.0 5408.0 TGTGCCAGCAGCCCCCTTGGGGACAGGGAAAATTCACCCCTCCACTTT CASSPLGDRENSPLHF TRBV7-9*01 TRBJ1-6*01 42.0 1546.0 CAASETSYDKVIF_CASSPLGDRENSPLHF 5 7067 BZLF1-190-197 EBV 0.5 2156 NEG 230 6837 8 EBV BZLF1 RAKFKQLL effector memory T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-B*08:01 B2M MHCI -5793 chip0423_84270 13.18 10.81 Chip2 T1D_5 T1D TGTGCCAGCCAACTAGCGGGAGGCACCGGGGAGCTGTTTTTT CASQLAGGTGELFF TRBV24-1*01 TRBJ2-2*01 57.0 3149.0 _CASQLAGGTGELFF 69 3171 BZLF1-190-197 EBV 0.57 2156 NEG 222 2949 9 EBV BZLF1 RAKFKQLL effector memory T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-B*08:01 B2M MHCI -5794 chip0423_644189 -0.82 7.51 Chip2 T1D_6 T1D TGTGTGGTGAGCGAGGCTTATAACACCGACAAGCTCATCTTT CVVSEAYNTDKLIF TRAV10*01 TRAJ34*01 42.0 1977.0 TGTGCCAGCAGCCAACTGCGCGAATCGTACAATGAGCAGTTCTTC CASSQLRESYNEQFF TRBV3-1*01 TRBJ2-1*01 87.0 5960.0 CVVSEAYNTDKLIF_CASSQLRESYNEQFF 1 7681 GAD65-159-167 GAD65 0.61 7 NEG 217 7464 3 HomoSapiens GAD65 ILMHCQTTL Naive T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*02:01 B2M MHCI -5795 chip0423_218462 9.75 8.54 Chip2 T1D_4 T1D TGCATCGTCAGAGAGGGAGGAGGTGCTGACGGACTCACCTTT CIVREGGGADGLTF TRAV26-1*01 TRAJ45*01 3.0 52.0 TGTGCCAGCAGCTTAGCGGTCGGAGAAGGGCCCCAGCATTTT CASSLAVGEGPQHF TRBV7-9*01 TRBJ1-5*01 14.0 782.0 CIVREGGGADGLTF_CASSLAVGEGPQHF 68 5583 BZLF1-190-197 EBV 0.88 2156 BZLF1-190-197 272 5311 8 EBV BZLF1 RAKFKQLL effector memory T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-B*08:01 B2M MHCI -5796 chip0423_409863 10.78 6.48 Chip2 T1D_4 T1D TGTGCTGGGCAGGAAACCTCCTACGACAAGGTGATATTT CAGQETSYDKVIF TRAV20*01 TRAJ50*01 18.0 1638.0 TGTGCCAGCAGCCAAGTCCCGCCAGGGCACTATGGCTACACCTTC CASSQVPPGHYGYTF TRBV4-2*01 TRBJ1-2*01 63.0 2347.0 CAGQETSYDKVIF_CASSQVPPGHYGYTF 1 9248 BZLF1-190-197 EBV 0.53 2156 NEG 290 8958 10 EBV BZLF1 RAKFKQLL effector memory T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-B*08:01 B2M MHCI -5797 chip0423_727584 13.4 6.74 Chip2 healthy_3 healthy TGTGCCAGCAGCAGCCTAGGGGACAGGGACCAGACGGCTTTCTTT CASSSLGDRDQTAFF TRBV7-9*01 TRBJ1-1*01 4.0 143.0 _CASSSLGDRDQTAFF 1 3430 GAD65-114-122 GAD65 0.67 63 NEG 251 3179 10 HomoSapiens GAD65 VMNILLQYV effector memory T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*02:01 B2M MHCI -5798 chip0423_659022 14.09 9.26 Chip2 T1D_4 T1D TGCATCCTCCCGTTGGCTGGTTGTACTAGCTATGGAAAGCTGACATTT CILPLAGCTSYGKLTF TRAV26-2*01 TRAJ52*01 91.0 4150.0 TGTGCCAGCAGCCAAGGACAGGCCTACGAGCAGTACTTC CASSQGQAYEQYF TRBV7-8*01 TRBJ2-7*01 73.0 3314.0 CILPLAGCTSYGKLTF_CASSQGQAYEQYF 1 5475 EBNA3A-193-201 EBV 0.9 1022 EBNA3A-193-201 280 5195 12 EBV EBNA3A FLRGRAYGL effector T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-B*08:01 B2M MHCI -5799 chip0423_178050 12.18 6.3 Chip2 T1D_6 T1D TGCATCCTCCCACTTGCTGGTGGTACTAGCTATGGAAAGCTGACATTT CILPLAGGTSYGKLTF TRAV26-2*01 TRAJ52*01 86.0 1886.0 CILPLAGGTSYGKLTF_ 55 6432 EBNA3A-193-201 EBV 0.64 1022 EBNA3A-193-201 292 6140 10 EBV EBNA3A FLRGRAYGL effector memory T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-B*08:01 B2M MHCI -5800 chip0423_644555 12.66 13.62 Chip2 T1D_4 T1D TGCATCGTCAGAGAGGGAGGAGGTGCTGACGGACTCACCTTT CIVREGGGADGLTF TRAV26-1*01 TRAJ45*01 28.0 1416.0 TGTGCCAGCAGCTTAGCGGTCGGAGAAGGGCCCCAGCATTTT CASSLAVGEGPQHF TRBV7-9*01 TRBJ1-5*01 20.0 743.0 CIVREGGGADGLTF_CASSLAVGEGPQHF 68 1955 BZLF1-190-197 EBV 0.7 2156 NEG 227 1728 11 EBV BZLF1 RAKFKQLL effector T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-B*08:01 B2M MHCI -5801 chip0423_89647 10.76 7.05 Chip2 T1D_6 T1D TGCGCCAGCAGCCAAGACTATGGTCGGGGTGGCTACACCTTC CASSQDYGRGGYTF TRBV4-1*01 TRBJ1-2*01 38.0 1867.0 _CASSQDYGRGGYTF 4 6254 LMP2A-CPL EBV 0.91 44 NEG 266 5988 10 EBV LMP2A CPLSKILL effector memory T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-B*08:01 B2M MHCI -5802 chip0423_671921 13.94 7.35 Chip2 T1D_4 T1D TGTGCCAGCAGCTTAGCGGTCGGAGAAGGGCCCCAGCATTTT CASSLAVGEGPQHF TRBV7-9*01 TRBJ1-5*01 40.0 2225.0 _CASSLAVGEGPQHF 113 5235 BZLF1-190-197 EBV 0.57 2156 BZLF1-190-197 274 4961 10 EBV BZLF1 RAKFKQLL effector memory T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-B*08:01 B2M MHCI -5803 chip0423_251766 13.8 10.6 Chip2 T1D_4 T1D TGTGCTGTGAGAGACACGACGTGGGATGACAAGATCATCTTT CAVRDTTWDDKIIF TRAV3*01 TRAJ30*01 178.0 5963.0 TGTGCCAGCAGCTTAGGAGGGGGAGAGGGGGCCAGTGAGCAGTTCTTC CASSLGGGEGASEQFF TRBV7-6*01 TRBJ2-1*01 56.0 1677.0 CAVRDTTWDDKIIF_CASSLGGGEGASEQFF 12 3863 EBNA3A-193-201 EBV 0.5 1022 NEG 253 3610 12 EBV EBNA3A FLRGRAYGL effector T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-B*08:01 B2M MHCI -5804 chip0423_877780 9.64 10.62 Chip2 T1D_4 T1D TGTGCTGTTTAGTTAGTGAGGGTAGCAACTATAAACTGACATTT CAV*LVRg?tSNYKLTF TRAV8-6*01 TRAJ53*01 1.0 65.0 TGTGCCAGCAGGAGGACAGGGGCAAATTCACCCCTCCACTTT CASRRTGANSPLHF TRBV12-3*01,TRBV12-4*01 TRBJ1-6*01 3.0 118.0 CAV*LVRg?tSNYKLTF_CASRRTGANSPLHF 1 3907 BZLF1-190-197 EBV 0.62 2156 BZLF1-190-197 261 3646 9 EBV BZLF1 RAKFKQLL effector memory T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-B*08:01 B2M MHCI -5805 chip0423_852266 12.69 8.26 Chip2 T1D_4 T1D TCCCTCATCCCTCTTGCTGGTGGTACTAGCTATGCAAATCTGACATTT SLIPLAGGTSYANLTF TRAV26-2*01 TRAJ52*01 5.0 149.0 TGTGCCAGCAGCTTAGGGCAAGCCTACGAGCAGTACTTC CASSLGQAYEQYF TRBV7-8*01 TRBJ2-7*01 26.0 1886.0 SLIPLAGGTSYANLTF_CASSLGQAYEQYF 1 3344 EBNA3A-193-201 EBV 1.0 1022 NEG 279 3065 10 EBV EBNA3A FLRGRAYGL effector memory T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-B*08:01 B2M MHCI -5806 chip0423_354455 12.11 6.92 Chip2 T1D_4 T1D TGCATCCTGCCTCTTGCTGGTGGTACTAGCTATGGAAAGCTGACATTT CILPLAGGTSYGKLTF TRAV26-2*01 TRAJ52*01 10.0 276.0 TGTGCCAGCAGCTTAGGGCAAGCCTACGAGCAGTACTTC CASSLGQAYEQYF TRBV7-8*01 TRBJ2-7*01 28.0 1301.0 CILPLAGGTSYGKLTF_CASSLGQAYEQYF 308 4531 EBNA3A-193-201 EBV 0.57 1022 NEG 249 4282 10 EBV EBNA3A FLRGRAYGL effector memory T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-B*08:01 B2M MHCI -5807 chip0423_714374 5.65 9.24 Chip2 T1D_4 T1D TGCATCCTGCCTCTTGCTGATGGTACTAGCTATGGAAAGCTGACATTT CILPLADGTSYGKLTF TRAV26-2*01 TRAJ52*01 30.0 1178.0 TGTGCCAGCAGCTTAGGGCAAGCCTACGAGCAGTACTTC CASSLGQAYEQYF TRBV7-8*01 TRBJ2-7*01 64.0 3087.0 CILPLADGTSYGKLTF_CASSLGQAYEQYF 3 8067 EBNA3A-193-201 EBV 0.8 1022 EBNA3A-193-201 271 7796 6 EBV EBNA3A FLRGRAYGL central memory T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-B*08:01 B2M MHCI -5808 chip0423_623593 7.44 12.18 Chip2 T1D_6 T1D TGTGCCTCCCAAGGAGGAAGCCAAGGAAATCTCATCTTT CASQGGSQGNLIF TRAV20*01 TRAJ42*01 27.0 1683.0 TGTGCCAGCAGCTTAGGAGGACAGACAGAGACCCAGTACTTC CASSLGGQTETQYF TRBV13*01 TRBJ2-5*01 29.0 1323.0 CASQGGSQGNLIF_CASSLGGQTETQYF 13 8331 ROTA-VP6 ROTA 0.52 47 ROTA-VP6 230 8101 7 RotavirusA VP6 TLLANVTAV transitional T cells between effector and memory populations PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*02:01 B2M MHCI -5809 chip0423_108731 9.63 7.64 Chip2 T1D_4 T1D TGTGCTGTCAATTCAGGAAACACACCTCTTGTCTTT CAVNSGNTPLVF TRAV1-2*01 TRAJ29*01 34.0 3298.0 TGTGCCAGCAGCCAAGTCAACAACCCGGGGGATGGCTACACCTTC CASSQVNNPGDGYTF TRBV14*01 TRBJ1-2*01 16.0 509.0 CAVNSGNTPLVF_CASSQVNNPGDGYTF 31 7466 EBNA3A-158-166 EBV 0.76 444 EBNA3A-158-166 238 7228 8 EBV EBNA3A QAKWRLQTL effector memory T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-B*08:01 B2M MHCI -5810 chip0423_412539 16.03 11.04 Chip2 T1D_5 T1D TGTGCCAGCAGCTTCACATCCAGCGGGGGGGTGGAGCAGTTCTTC CASSFTSSGGVEQFF TRBV7-9*01 TRBJ2-1*01 66.0 3919.0 _CASSFTSSGGVEQFF 3 3278 BZLF1-190-197 EBV 0.42 2156 NEG 234 3044 12 EBV BZLF1 RAKFKQLL effector T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-B*08:01 B2M MHCI -5811 chip0423_600082 9.56 8.09 Chip2 T1D_4 T1D TGCATCGTCAGAGAGGGAGGAGGTGCTGACGGACTCACCTTT CIVREGGGADGLTF TRAV26-1*01 TRAJ45*01 27.0 1250.0 TGTGCCAGCAGCTTAGCGGTCGGAGAAGGGCCCCAGCATTTT CASSLAVGEGPQHF TRBV7-9*01 TRBJ1-5*01 28.0 1181.0 CIVREGGGADGLTF_CASSLAVGEGPQHF 68 4952 BZLF1-190-197 EBV 1.0 2156 BZLF1-190-197 246 4706 8 EBV BZLF1 RAKFKQLL effector memory T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-B*08:01 B2M MHCI -5812 chip0423_80821 10.77 7.32 Chip2 T1D_4 T1D TGTGCTGTGAGAGACACGACGTGGGCTGCCAAGATCATCTTT CAVRDTTWAAKIIF TRAV3*01 TRAJ30*01 41.0 2142.0 TGTGCCAGCAGCTTAGGAGGGGGAGAGGGGGCCAGTGAGCAGTTCTTC CASSLGGGEGASEQFF TRBV7-6*01 TRBJ2-1*01 11.0 592.0 CAVRDTTWAAKIIF_CASSLGGGEGASEQFF 6 6470 EBNA3A-193-201 EBV 1.0 1022 NEG 278 6192 10 EBV EBNA3A FLRGRAYGL effector memory T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-B*08:01 B2M MHCI -5813 chip0423_359224 9.72 9.77 Chip2 T1D_5 T1D TGTGCAGCGGCGGAAACCTCCTACGACAAGGTGATATTT CAAAETSYDKVIF TRAV13-1*01 TRAJ50*01 23.0 2020.0 TGTGCCAGCCAACTAGCGGGAGGCACCGGGGAGCTGTTTTTT CASQLAGGTGELFF TRBV24-1*01 TRBJ2-2*01 29.0 1373.0 CAAAETSYDKVIF_CASQLAGGTGELFF 131 4286 BZLF1-190-197 EBV 0.54 2156 NEG 238 4048 9 EBV BZLF1 RAKFKQLL effector memory T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-B*08:01 B2M MHCI -5814 chip0423_729346 10.83 6.56 Chip2 T1D_4 T1D TGTGCCAGCAGCCAAGTCAACAACCCGGGGGATGGCTACACCTTC CASSQVNNPGDGYTF TRBV14*01 TRBJ1-2*01 8.0 308.0 _CASSQVNNPGDGYTF 94 6784 EBNA3A-158-166 EBV 0.88 444 EBNA3A-158-166 227 6557 10 EBV EBNA3A QAKWRLQTL effector memory T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-B*08:01 B2M MHCI -5815 chip0423_215908 11.64 7.5 Chip2 T1D_6 T1D TGTGCCAGCAGCTTGGGACAGGCCTACGAGCAGTACTTC CASSLGQAYEQYF TRBV7-8*01 TRBJ2-7*01 22.0 1110.0 _CASSLGQAYEQYF 175 6497 EBNA3A-193-201 EBV 0.67 1022 NEG 280 6217 10 EBV EBNA3A FLRGRAYGL effector memory T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-B*08:01 B2M MHCI -5816 chip0423_582753 6.79 12.62 Chip2 T1D_5 T1D TGCGCCAGCAGCCAAGACGGCACAGGGATTAACACTGAAGCTTTCTTT CASSQDGTGINTEAFF TRBV4-1*01 TRBJ1-1*01 58.0 1476.0 _CASSQDGTGINTEAFF 2 4100 NP44-52 FLU 0.88 474 NP44-52 228 3872 7 InfluenzaA NP CTELKLSDY transitional T cells between effector and memory populations PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*01:01 B2M MHCI -5817 chip0423_572777 -0.02 6.33 Chip2 healthy_3 healthy TGTGCCGTGCCGGACTACAAGCTCAGCTTT CAVPDYKLSF TRAV12-2*01 TRAJ20*01 5.0 802.0 TGCAGCGTTGACCCGCTAGCGGGAGAGGTACAAAATACGCAGTATTTT CSVDPLAGEVQNTQYF TRBV29-1*01 TRBJ2-3*01 294.0 10476.0 CAVPDYKLSF_CSVDPLAGEVQNTQYF 1 14014 PGT-178 PGT 0.62 1480 PGT-178 235 13779 3 HomoSapiens PGT LLAGIGTVPI Naive T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*02:01 B2M MHCI -5818 chip0423_561698 -1.27 9.85 Chip2 T1D_5 T1D TGTGCCAGCAGCCAAACGAATCAGCCCCAGCATTTT CASSQTNQPQHF TRBV7-9*01 TRBJ1-5*01 37.0 1626.0 _CASSQTNQPQHF 1 6908 BZLF1-190-197 EBV 0.5 2156 BZLF1-190-197 227 6681 3 EBV BZLF1 RAKFKQLL Naive T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-B*08:01 B2M MHCI -5819 chip0423_845725 8.55 10.07 Chip2 T1D_4 T1D TGTGCTGTGAGTGATGGAGAAGGAGCCCAGAAGCTGGTATTT CAVSDGEGAQKLVF TRAV8-6*01 TRAJ54*01 81.0 3502.0 TGTGCCAGCAGCTTAACGGCTCTGGCAGGTCCAAACACTGAAGCTTTCTTT CASSLTALAGPNTEAFF TRBV7-3*01 TRBJ1-1*01 22.0 521.0 CAVSDGEGAQKLVF_CASSLTALAGPNTEAFF 1 5467 BZLF1-190-197 EBV 0.85 2156 BZLF1-190-197 243 5224 8 EBV BZLF1 RAKFKQLL effector memory T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-B*08:01 B2M MHCI -5820 chip0423_246064 7.0 10.72 Chip2 T1D_6 T1D TGTGCCAGTAGTATACGGAGCTCCTACGAGCAGTACTTC CASSIRSSYEQYF TRBV19*01 TRBJ2-7*01 12.0 779.0 _CASSIRSSYEQYF 36 5809 M1 FLU 0.54 1250 M1 278 5531 7 InfluenzaA M1 GILGFVFTL transitional T cells between effector and memory populations PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*02:01 B2M MHCI -5821 chip0423_868978 8.82 9.4 Chip2 T1D_4 T1D TGTGCCAGCAGCCAAGTCAACAACCCGGGGGATGGCTACACCTTC CASSQVNNPGDGYTF TRBV14*01 TRBJ1-2*01 9.0 362.0 _CASSQVNNPGDGYTF 94 6857 EBNA3A-158-166 EBV 1.0 444 EBNA3A-158-166 247 6610 8 EBV EBNA3A QAKWRLQTL effector memory T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-B*08:01 B2M MHCI -5822 chip0423_390826 12.63 13.32 Chip2 T1D_4 T1D TGTGCTGTGAGTGATGGAGAAGGAGCCCAGAAGCTGGTATTT CAVSDGEGAQKLVF TRAV8-6*01 TRAJ54*01 66.0 3968.0 TGTGCCAGCAGCTTAACGGTTCTGGCAGGTCCAAACACTGAAGCTTTCTTT CASSLTVLAGPNTEAFF TRBV7-3*01 TRBJ1-1*01 56.0 1417.0 CAVSDGEGAQKLVF_CASSLTVLAGPNTEAFF 44 2681 BZLF1-190-197 EBV 0.8 2156 NEG 269 2412 11 EBV BZLF1 RAKFKQLL effector T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-B*08:01 B2M MHCI -5823 chip0423_383419 -1.03 7.8 Chip2 T1D_6 T1D TGTGCATTAGGACGGTCTAACTTTGGAAATGAGAAATTAACCTTT CALGRSNFGNEKLTF TRAV12-3*01 TRAJ48*01 15.0 651.0 TGCAGTTCTAGCGGGGGCCCTTACACAGATACGCAGTATTTT CSSSGGPYTDTQYF TRBV20-1*01 TRBJ2-3*01 24.0 1426.0 CALGRSNFGNEKLTF_CSSSGGPYTDTQYF 1 6924 PGT-178 PGT 0.93 1480 PGT-178 244 6680 3 HomoSapiens PGT LLAGIGTVPI Naive T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*02:01 B2M MHCI -5824 chip0423_579559 10.62 7.14 Chip2 T1D_4 T1D TGTGCAGAGAGTGAAACTGGGGCAAACAACCTCTTCTTT CAESETGANNLFF TRAV5*01 TRAJ36*01 30.0 2033.0 TGTGCCAGCAGCACCCCAGGATATACCTACGAGCAGTACTTC CASSTPGYTYEQYF TRBV11-3*01 TRBJ2-7*01 53.0 2118.0 CAESETGANNLFF_CASSTPGYTYEQYF 1 4515 BZLF1-190-197 EBV 0.67 2156 NEG 240 4275 10 EBV BZLF1 RAKFKQLL effector memory T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-B*08:01 B2M MHCI -5825 chip0423_47831 16.14 10.05 Chip2 T1D_4 T1D TGCATCGTCAGAGAGGGAGGAGGTGCTGACGGACTCACCTTT CIVREGGGADGLTF TRAV26-1*01 TRAJ45*01 28.0 1450.0 TGTGCCAGCAGCTTAGCGGTCGGAGAAGGGCCCCAGCATTTT CASSLAVGEGPQHF TRBV7-9*01 TRBJ1-5*01 49.0 2091.0 CIVREGGGADGLTF_CASSLAVGEGPQHF 68 3189 BZLF1-190-197 EBV 0.77 2156 BZLF1-190-197 286 2903 12 EBV BZLF1 RAKFKQLL effector T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-B*08:01 B2M MHCI -5826 chip0423_557588 14.24 9.92 Chip2 T1D_4 T1D TGCATCGTCAGAGAGGGAGGAGGTGCTGACGGACTCCCCTTT CIVREGGGADGLPF TRAV26-1*01 TRAJ45*01 72.0 4663.0 TGTGCCAGCAGCTTAGCGGTCGGAGAAGGGCCCCAGCATTTT CASSLAVGEGPQHF TRBV7-9*01 TRBJ1-5*01 23.0 1099.0 CIVREGGGADGLPF_CASSLAVGEGPQHF 21 4154 BZLF1-190-197 EBV 0.79 2156 BZLF1-190-197 280 3874 12 EBV BZLF1 RAKFKQLL effector T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-B*08:01 B2M MHCI -5827 chip0423_232977 5.51 10.08 Chip2 T1D_6 T1D TGTGCTGTCCCCCTGAAAACCTCCTACGACCAGGTGCTATTT CAVPLKTSYDQVLF TRAV8-3*01 TRAJ50*01 12.0 908.0 TGTGCTCCGGGGGGGGGTTCAGGATACAGCACCCTCACCTGT CAPGGGSGYSTLTC TRAV17*01 TRAJ11*01 10.0 463.0 0.37 TGCGCCAGCAGTAGACAGGGGGGGCACTATGGCTACACCTTC CASSRQGGHYGYTF TRBV6-1*01 TRBJ1-2*01 19.0 865.0 CAVPLKTSYDQVLF_CASSRQGGHYGYTF 1 7092 EBV-LMP2-FLY EBV 0.58 355 EBV-LMP2-FLY 266 6826 6 EBV LMP2 FLYALALLL central memory T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*02:01 B2M MHCI -5828 chip0423_182844 14.41 9.63 Chip2 T1D_5 T1D TGTGCAATGAGAGAGGGCGAGGGTGGAGGCTTCAAAACTATCTTT CAMREGEGGGFKTIF TRAV14/DV4*01 TRAJ9*01 43.0 1978.0 TGTGCCAGCAGTCCCCCGGGGAGAAATGAAAAACTGTTTTTT CASSPPGRNEKLFF TRBV12-3*01,TRBV12-4*01 TRBJ1-4*01 50.0 1862.0 CAMREGEGGGFKTIF_CASSPPGRNEKLFF 1 6559 BZLF1-190-197 EBV 0.43 2156 NEG 286 6273 12 EBV BZLF1 RAKFKQLL effector T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-B*08:01 B2M MHCI -5829 chip0423_129814 11.56 6.75 Chip2 T1D_4 T1D TGTGCCAGCAGCTTAGCGGTCGGAGAAGGGCCCCAGCATTTT CASSLAVGEGPQHF TRBV7-9*01 TRBJ1-5*01 47.0 1890.0 _CASSLAVGEGPQHF 113 5959 BZLF1-190-197 EBV 0.93 2156 BZLF1-190-197 252 5707 10 EBV BZLF1 RAKFKQLL effector memory T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-B*08:01 B2M MHCI -5830 chip0423_401396 6.19 11.44 Chip2 T1D_6 T1D _ 6746 7687 EBNA3A-158-166 EBV 0.91 444 NEG 235 7452 7 EBV EBNA3A QAKWRLQTL transitional T cells between effector and memory populations PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-B*08:01 B2M MHCI -5831 chip0423_818451 -0.84 10.39 Chip2 T1D_6 T1D TGTGCAACGTCGATATCTAACTTTGGAAATGAGAAATTAACCTTT CATSISNFGNEKLTF TRAV12-3*01 TRAJ48*01 90.0 3937.0 TGTGCCAGCAGAGGGGGCTCTCCCAATCAGCCCCAGCATTTT CASRGGSPNQPQHF TRBV27*01 TRBJ1-5*01 14.0 602.0 CATSISNFGNEKLTF_CASRGGSPNQPQHF 1 6221 PGT-178 PGT 0.62 1480 PGT-178 226 5995 3 HomoSapiens PGT LLAGIGTVPI Naive T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*02:01 B2M MHCI -5832 chip0423_493342 14.37 10.88 Chip2 T1D_5 T1D TGTGCAATGAGAGAGGACACGGGCAGGAGAGCACTTACTTTT CAMREDTGRRALTF TRAV14/DV4*01 TRAJ5*01 92.0 4840.0 TGTGCCAGCTCCTTTAACTCATTGCAGGAGATCGCCTACGAGCAGTACTTC CASSFNSLQEIAYEQYF TRBV11-2*01 TRBJ2-7*01 53.0 1896.0 CAMREDTGRRALTF_CASSFNSLQEIAYEQYF 4 3313 BZLF1-190-197 EBV 0.44 2156 NEG 220 3093 12 EBV BZLF1 RAKFKQLL effector T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-B*08:01 B2M MHCI -5833 chip0423_185606 14.5 10.64 Chip2 T1D_5 T1D TGTGCAGCGGCGGAAACCTCCTACAACAAGGTGATATTT CAAAETSYNKVIF TRAV13-1*01 TRAJ50*01 41.0 3590.0 CAAAETSYNKVIF_ 1 4737 BZLF1-190-197 EBV 0.8 2156 NEG 236 4501 12 EBV BZLF1 RAKFKQLL effector T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-B*08:01 B2M MHCI -5834 chip0423_156089 13.21 11.24 Chip2 T1D_5 T1D TGTGCAGCGGCGGAAACCTCCTACGACAAGGTGATATTT CAAAETSYDKVIF TRAV13-1*01 TRAJ50*01 82.0 7039.0 TGTGCCAGCCAACTAGCGGGAGGCACCGGGGAGCTGTTTTTT CASQLAGGTGELFF TRBV24-1*01 TRBJ2-2*01 13.0 744.0 CAAAETSYDKVIF_CASQLAGGTGELFF 131 3168 BZLF1-190-197 EBV 0.65 2156 NEG 232 2936 9 EBV BZLF1 RAKFKQLL effector memory T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-B*08:01 B2M MHCI -5835 chip0423_122724 11.78 6.95 Chip2 T1D_4 T1D TGTGCCAGCAGCTTAGGGCAAGCCTACGAGCAGTACTTC CASSLGQAYEQYF TRBV7-8*01 TRBJ2-7*01 33.0 2196.0 _CASSLGQAYEQYF 175 7264 EBNA3A-193-201 EBV 0.76 1022 EBNA3A-193-201 226 7038 10 EBV EBNA3A FLRGRAYGL effector memory T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-B*08:01 B2M MHCI -5836 chip0423_601603 11.78 6.87 Chip2 T1D_4 T1D TGTGCTGTCAATTCAGGAAACACACCTCTTGTCTTT CAVNSGNTPLVF TRAV1-2*01 TRAJ29*01 32.0 2913.0 TGTGCCAGCAGCCAAGTCAACAACCCGGGGGATGGCTACACCTTC CASSQVNNPGDGYTF TRBV14*01 TRBJ1-2*01 11.0 236.0 CAVNSGNTPLVF_CASSQVNNPGDGYTF 31 5834 EBNA3A-158-166 EBV 0.67 444 EBNA3A-158-166 314 5520 10 EBV EBNA3A QAKWRLQTL effector memory T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-B*08:01 B2M MHCI -5837 chip0423_153116 10.49 6.67 Chip2 T1D_4 T1D _ 6746 8523 BZLF1-190-197 EBV 0.91 2156 BZLF1-190-197 314 8209 10 EBV BZLF1 RAKFKQLL effector memory T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-B*08:01 B2M MHCI -5838 chip0423_425879 11.72 10.89 Chip2 T1D_5 T1D TGTGCAGCGGCGGAAACCTCCCACGACAAGGTGATATTT CAAAETSHDKVIF TRAV13-1*01 TRAJ50*01 20.0 2024.0 TGTGCCAGCCAACTAGCGGGAGGCACCGGGGAGCTGTTTTTT CASQLAGGTGELFF TRBV24-1*01 TRBJ2-2*01 109.0 6922.0 CAAAETSHDKVIF_CASQLAGGTGELFF 1 3682 BZLF1-190-197 EBV 0.5 2156 NEG 267 3415 9 EBV BZLF1 RAKFKQLL effector memory T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-B*08:01 B2M MHCI -5839 chip0423_513067 13.08 6.33 Chip2 T1D_6 T1D TGCATCCTCCCACTTGCTGGTGGTACTAGCTATGGAAAGCTGACATTT CILPLAGGTSYGKLTF TRAV26-2*01 TRAJ52*01 33.0 2266.0 TGTGCCAGCAGCTTGGGACAGGCCTACGAGCAGTACTTC CASSLGQAYEQYF TRBV7-8*01 TRBJ2-7*01 15.0 830.0 CILPLAGGTSYGKLTF_CASSLGQAYEQYF 308 4309 EBNA3A-193-201 EBV 0.69 1022 NEG 273 4036 10 EBV EBNA3A FLRGRAYGL effector memory T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-B*08:01 B2M MHCI -5840 chip0423_81096 6.13 12.56 Chip2 T1D_5 T1D TGTGCAGAGGCAGGAACTGCTCTGATCTTT CAEAGTALIF TRAV13-2*01 TRAJ15*01 3.0 532.0 TGCGCCAGCAGCCAAGACGGCACAGGGATTAACACTGAAGCTTTCTTT CASSQDGTGINTEAFF TRBV4-1*01 TRBJ1-1*01 109.0 3416.0 CAEAGTALIF_CASSQDGTGINTEAFF 1 6444 NP44-52 FLU 0.84 474 NP44-52 271 6173 7 InfluenzaA NP CTELKLSDY transitional T cells between effector and memory populations PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*01:01 B2M MHCI -5841 chip0423_873129 11.7 7.2 Chip2 T1D_6 T1D TGCATCCTCCCACTTGCTGGCGGTACTAGCTATGGAAAGCTGACATTT CILPLAGGTSYGKLTF TRAV26-2*01 TRAJ52*01 65.0 2768.0 TGTGCCAGCAGCTTGGGACAGGCCTACGAGCAGTACTTC CASSLGQAYEQYF TRBV7-8*01 TRBJ2-7*01 31.0 1698.0 CILPLAGGTSYGKLTF_CASSLGQAYEQYF 308 5621 EBNA3A-193-201 EBV 0.78 1022 NEG 277 5344 10 EBV EBNA3A FLRGRAYGL effector memory T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-B*08:01 B2M MHCI -5842 chip0423_19966 11.83 7.3 Chip2 T1D_4 T1D TGCATCCTGCCTCTTGCTGGTGGTACTAGCTATGGAAAGCTGACATTT CILPLAGGTSYGKLTF TRAV26-2*01 TRAJ52*01 62.0 2843.0 TGTGCCAGCAGCTTAGGGCAAGCCTACGAGCAGTACTTC CASSLGQAYEQYF TRBV7-8*01 TRBJ2-7*01 47.0 2651.0 CILPLAGGTSYGKLTF_CASSLGQAYEQYF 308 5385 EBNA3A-193-201 EBV 0.75 1022 NEG 251 5134 10 EBV EBNA3A FLRGRAYGL effector memory T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-B*08:01 B2M MHCI -5843 chip0423_114424 8.88 9.4 Chip2 T1D_6 T1D TGTGCCGTGAACCCAGGAGGAAAGCTTATCTTC CAVNPGGKLIF TRAV12-2*01 TRAJ23*01 17.0 1997.0 TGCAGCGCCGGCAGGGACGGGACTAATGAAAAACTGTTTTTT CSAGRDGTNEKLFF TRBV29-1*01 TRBJ1-4*01 114.0 6207.0 CAVNPGGKLIF_CSAGRDGTNEKLFF 1 6653 EBV-BLMF1 EBV 0.69 2531 NEG 291 6362 8 EBV BLMF1 GLCTLVAML effector memory T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*02:01 B2M MHCI -5844 chip0423_423391 12.42 6.33 Chip2 T1D_5 T1D TGTGCCAGCAGCTTATTAGGGGAGCAGAATTCACCCCTCCACTTT CASSLLGEQNSPLHF TRBV7-9*01 TRBJ1-6*01 20.0 1037.0 _CASSLLGEQNSPLHF 4 6393 BZLF1-190-197 EBV 1.0 2156 NEG 265 6128 10 EBV BZLF1 RAKFKQLL effector memory T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-B*08:01 B2M MHCI -5845 chip0423_433571 10.6 6.57 Chip2 T1D_4 T1D TGTGCTGTGAGAGACACGACGTGGGCTGCCAAGATCATCTTT CAVRDTTWAAKIIF TRAV3*01 TRAJ30*01 41.0 1959.0 TGTGCCAGCAGCTTAGGAGGGGGAGAGGGGGCCAGTGAGCAGTTCTTC CASSLGGGEGASEQFF TRBV7-6*01 TRBJ2-1*01 41.0 2530.0 CAVRDTTWAAKIIF_CASSLGGGEGASEQFF 6 6868 EBNA3A-193-201 EBV 0.41 1022 NEG 255 6613 10 EBV EBNA3A FLRGRAYGL effector memory T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-B*08:01 B2M MHCI -5846 chip0423_84218 8.96 8.74 Chip2 T1D_5 T1D TGTGCAGCAACGGAAACCTCCTACGACAAGGTGATATTT CAATETSYDKVIF TRAV13-1*01 TRAJ50*01 23.0 2800.0 TGTGCCAGCAGCCTATTAGGAGTACGGGACAGGGAAAACGAGCAGTACTTC CASSLLGVRDRENEQYF TRBV11-1*01 TRBJ2-7*01 16.0 681.0 CAATETSYDKVIF_CASSLLGVRDRENEQYF 11 7268 BZLF1-190-197 EBV 0.71 2156 NEG 234 7034 8 EBV BZLF1 RAKFKQLL effector memory T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-B*08:01 B2M MHCI -5847 chip0423_306830 11.8 6.9 Chip2 T1D_4 T1D TGCATCCTGCCTCTTGCTGGTGGTACTAGCTATGGAAAGCTGACATTT CILPLAGGTSYGKLTF TRAV26-2*01 TRAJ52*01 22.0 997.0 TGTGCCAGCAGCTTAGGGCAAGCCTACGAGCAGTACTTC CASSLGQAYEQYF TRBV7-8*01 TRBJ2-7*01 25.0 1048.0 CILPLAGGTSYGKLTF_CASSLGQAYEQYF 308 6316 EBNA3A-193-201 EBV 0.77 1022 EBNA3A-193-201 254 6062 10 EBV EBNA3A FLRGRAYGL effector memory T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-B*08:01 B2M MHCI -5848 chip0423_34201 13.17 13.52 Chip2 T1D_5 T1D TGTGCAGCGCCTGAAACCTCCTACGACAAGGTGATATTT CAAPETSYDKVIF TRAV13-1*01 TRAJ50*01 19.0 1370.0 TGTGCCAGCAGCTTATTAGGGGAGCAGAATTCACCCCTCCACTTT CASSLLGEQNSPLHF TRBV7-9*01 TRBJ1-6*01 57.0 1724.0 CAAPETSYDKVIF_CASSLLGEQNSPLHF 4 1904 BZLF1-190-197 EBV 0.62 2156 NEG 219 1685 11 EBV BZLF1 RAKFKQLL effector T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-B*08:01 B2M MHCI -5849 chip0423_593250 9.71 8.68 Chip2 T1D_6 T1D TGTGCAGTCGTCACGGGAGGAGGGCGCAACCTCCCCTTT CAVVTGGGRNLPF TRAV5*01 TRAJ10*01 11.0 544.0 CAVVTGGGRNLPF_ 1 5409 LMP2A-CPL EBV 0.88 44 NEG 271 5138 8 EBV LMP2A CPLSKILL effector memory T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-B*08:01 B2M MHCI -5850 chip0423_537 8.3 9.44 Chip2 T1D_4 T1D TGTGCCAGCAGCCAAGTCAACAACCCGGGGGATGGCTACACCTTC CASSQVNNPGDGYTF TRBV14*01 TRBJ1-2*01 27.0 798.0 _CASSQVNNPGDGYTF 94 6413 EBNA3A-158-166 EBV 0.44 444 EBNA3A-158-166 262 6151 8 EBV EBNA3A QAKWRLQTL effector memory T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-B*08:01 B2M MHCI -5851 chip0423_598436 14.2 9.94 Chip2 T1D_6 T1D TGCATCCTCCCACTTGCTGGTGGTACTAGCTATGGAAAGCTGACATTT CILPLAGGTSYGKLTF TRAV26-2*01 TRAJ52*01 24.0 1159.0 TGTGCCAGCAGCTTGGGACAGGCCTACGAGCAGTACTTC CASSLGQAYEQYF TRBV7-8*01 TRBJ2-7*01 8.0 594.0 CILPLAGGTSYGKLTF_CASSLGQAYEQYF 308 5405 EBNA3A-193-201 EBV 0.48 1022 NEG 243 5162 12 EBV EBNA3A FLRGRAYGL effector T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-B*08:01 B2M MHCI -5852 chip0423_107835 15.35 8.8 Chip2 T1D_5 T1D TGTGCAGCTCTCGAAACCTCCTACGACAAGGTGATATTT CAALETSYDKVIF TRAV13-1*01 TRAJ50*01 17.0 2293.0 TGTGCCAGCAGTCCCGACGGATCCACCGGGGAGCTGTTTTTT CASSPDGSTGELFF TRBV12-3*01,TRBV12-4*01 TRBJ2-2*01 157.0 8799.0 CAALETSYDKVIF_CASSPDGSTGELFF 14 4176 BZLF1-190-197 EBV 0.55 2156 NEG 277 3899 12 EBV BZLF1 RAKFKQLL effector T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-B*08:01 B2M MHCI -5853 chip0423_358474 9.13 8.54 Chip2 T1D_4 T1D TGTGCAGCAATGGAAACCTCCTACGACAAGGTGATATTT CAAMETSYDKVIF TRAV13-1*01 TRAJ50*01 4.0 452.0 TGTGCCAGCAGCTCTACAGGGGCCGGCAATCAGCCCCAGCATTTT CASSSTGAGNQPQHF TRBV7-9*01 TRBJ1-5*01 78.0 2971.0 CAAMETSYDKVIF_CASSSTGAGNQPQHF 1 5396 BZLF1-190-197 EBV 0.71 2156 NEG 242 5154 8 EBV BZLF1 RAKFKQLL effector memory T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-B*08:01 B2M MHCI -5854 chip0423_607333 15.45 10.11 Chip2 T1D_4 T1D TGTGCCGTGATCACATTTCGTTCTAACGACTACAAGCTCCGCTTT CAVITFRSNDYKLRF TRAV12-2*01 TRAJ20*01 69.0 2554.0 TGCGCCAGCAGCCACGGACAGGGGGAGAACACTGAAGCTTTCTTT CASSHGQGENTEAFF TRBV4-1*01 TRBJ1-1*01 10.0 350.0 CAVITFRSNDYKLRF_CASSHGQGENTEAFF 1 4787 BZLF1-190-197 EBV 0.7 2156 BZLF1-190-197 224 4563 12 EBV BZLF1 RAKFKQLL effector T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-B*08:01 B2M MHCI -5855 chip0423_598776 15.52 10.21 Chip2 T1D_4 T1D TGCATCATCCGAGCCGCAGGCGGTGCTCTCCGCCTCACCTTT CIIRAAGGALRLTF TRAV26-1*01 TRAJ45*01 9.0 189.0 TGTGCCAGCAGCTTAGCGGTCGGAGAAGGGCCCCAGCATTTT CASSLAVGEGPQHF TRBV7-9*01 TRBJ1-5*01 33.0 1083.0 CIIRAAGGALRLTF_CASSLAVGEGPQHF 1 2765 BZLF1-190-197 EBV 0.72 2156 NEG 251 2514 12 EBV BZLF1 RAKFKQLL effector T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-B*08:01 B2M MHCI -5856 chip0423_393575 12.34 8.61 Chip2 T1D_4 T1D TGTGCTGTGTGGGACGCGACGTGCGATGCCGGGGTCATCTTT CAVWDATCDAGVIF TRAV3*01 TRAJ30*01 29.0 1831.0 TGTGCCAGCAGCTTAGGAGGGGGAGAGGGGGCCAGTGAGCAGTTCTTC CASSLGGGEGASEQFF TRBV7-6*01 TRBJ2-1*01 15.0 997.0 CAVWDATCDAGVIF_CASSLGGGEGASEQFF 1 3722 EBNA3A-193-201 EBV 0.53 1022 NEG 253 3469 10 EBV EBNA3A FLRGRAYGL effector memory T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-B*08:01 B2M MHCI -5857 chip0423_799258 9.55 7.34 Chip2 T1D_4 T1D TGTGCAGCAAGCGCCTTTGGTGGTACTAGCTATGGAACGCTGACCTTT CAASAFGGTSYGTLTF TRAV29/DV5*01 TRAJ52*01 10.0 264.0 TGTGCCAGCAGCTTAAGACACCTTAGCAATCAGCCCCAGCATTTT CASSLRHLSNQPQHF TRBV13*01 TRBJ1-5*01 38.0 1573.0 CAASAFGGTSYGTLTF_CASSLRHLSNQPQHF 1 7524 BZLF1-190-197 EBV 0.5 2156 NEG 260 7264 10 EBV BZLF1 RAKFKQLL effector memory T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-B*08:01 B2M MHCI -5858 chip0423_500503 -1.31 7.7 Chip2 T1D_5 T1D TGTGCAATGAGAGAGACGTACAAGCTCAGCTTT CAMRETYKLSF TRAV14/DV4*01 TRAJ20*01 3.0 168.0 TGTGCCAGTAGTGCGGGCGGGTCGGAGGGGCGCACTGAAGCTTTCGTT CASSAGGSEGRTEAFV TRBV19*01 TRBJ1-1*01 5.0 135.0 CAMRETYKLSF_CASSAGGSEGRTEAFV 1 8111 GAD2-SRK-8 GAD65 0.67 10 NEG 234 7877 3 HomoSapiens GAD2 SRKHKWKL Naive T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-B*08:01 B2M MHCI -5859 chip0423_112234 9.11 10.49 Chip2 T1D_6 T1D TGTGCAATGAGAGAGGAGGGGCACAAGCTCATCTTT CAMREEGHKLIF TRAV14/DV4*01 TRAJ32*01 8.0 572.0 TGTGCCAGCAGTTTACTAGGCGGGGGATACTCCTACGAGCAGTACTTC CASSLLGGGYSYEQYF TRBV27*01 TRBJ2-7*01 44.0 2107.0 CAMREEGHKLIF_CASSLLGGGYSYEQYF 1 6663 BZLF1-190-197 EBV 0.89 2156 BZLF1-190-197 268 6395 8 EBV BZLF1 RAKFKQLL effector memory T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-B*08:01 B2M MHCI -5860 chip0423_572754 12.71 10.96 Chip2 T1D_4 T1D TGCATCGTCAGAGAGGGAGGAGGTGCTGACGGGCTCCCCTTT CIVREGGGADGLPF TRAV26-1*01 TRAJ45*01 26.0 1027.0 TGTGCCAGCAGCTTAGCGGTCGGAGAAGGGCCCCAGCATTTT CASSLAVGEGPQHF TRBV7-9*01 TRBJ1-5*01 13.0 233.0 CIVREGGGADGLPF_CASSLAVGEGPQHF 21 3459 BZLF1-190-197 EBV 0.86 2156 BZLF1-190-197 266 3193 9 EBV BZLF1 RAKFKQLL effector memory T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-B*08:01 B2M MHCI -5861 chip0423_459321 -1.11 9.37 Chip2 T1D_4 T1D _ 6746 6861 PGT-178 PGT 0.6 1480 PGT-178 217 6644 3 HomoSapiens PGT LLAGIGTVPI Naive T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*02:01 B2M MHCI -5862 chip0423_694495 12.8 7.03 Chip2 T1D_4 T1D TGTGCCAGCAGCCACGTCAACAACCCGGGGGATGGCTACACCTTC CASSHVNNPGDGYTF TRBV14*01 TRBJ1-2*01 9.0 215.0 _CASSHVNNPGDGYTF 2 4628 EBNA3A-158-166 EBV 0.5 444 NEG 255 4373 10 EBV EBNA3A QAKWRLQTL effector memory T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-B*08:01 B2M MHCI -5863 chip0423_387575 13.36 6.71 Chip2 T1D_5 T1D TGCCTCGTGGGTGACGGGGCAGGAGGCGGTGCTGTCGGACTCACCTTT CLVGDGAGGGAVGLTF TRAV4*01 TRAJ45*01 54.0 2210.0 TGTGCCAGCAGCCCAATCCTGGAGGGGCCAGATACGCAGTATTTT CASSPILEGPDTQYF TRBV7-9*01 TRBJ2-3*01 3.0 196.0 CLVGDGAGGGAVGLTF_CASSPILEGPDTQYF 1 4288 BZLF1-190-197 EBV 0.71 2156 NEG 243 4045 10 EBV BZLF1 RAKFKQLL effector memory T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-B*08:01 B2M MHCI -5864 chip0423_860685 14.05 7.43 Chip2 T1D_6 T1D TGCATCCTCCCACTTGCTGGTGGTACTAGCTATGGAAAGCTGACATTT CILPLAGGTSYGKLTF TRAV26-2*01 TRAJ52*01 56.0 2374.0 TGTGCCAGCAGCTTGGGACAGGCCTACGAGCAGTACTTC CASSLGQAYEQYF TRBV7-8*01 TRBJ2-7*01 34.0 1165.0 CILPLAGGTSYGKLTF_CASSLGQAYEQYF 308 5547 EBNA3A-193-201 EBV 0.94 1022 EBNA3A-193-201 243 5304 10 EBV EBNA3A FLRGRAYGL effector memory T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-B*08:01 B2M MHCI -5865 chip0423_773556 13.37 7.47 Chip2 healthy_4 healthy TGTGCAGCAACCCTATATGACAAGATCATCTTT CAATLYDKIIF TRAV29/DV5*01 TRAJ30*01 1.0 30.0 CAATLYDKIIF_ 2 2986 BZLF1-190-197 EBV 0.91 2156 NEG 250 2736 10 EBV BZLF1 RAKFKQLL effector memory T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-B*08:01 B2M MHCI -5866 chip0423_586695 11.88 6.87 Chip2 T1D_6 T1D TGCATCCTCCCACTTGCTGGTGGTACTAGCTATGGAAAGCTGACATTT CILPLAGGTSYGKLTF TRAV26-2*01 TRAJ52*01 45.0 2038.0 TGTGCCAGCAGCTTGGGACAGGCCTACGAGCAGTACTTC CASSLGQAYEQYF TRBV7-8*01 TRBJ2-7*01 17.0 798.0 CILPLAGGTSYGKLTF_CASSLGQAYEQYF 308 5461 EBNA3A-193-201 EBV 0.91 1022 EBNA3A-193-201 229 5232 10 EBV EBNA3A FLRGRAYGL effector memory T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-B*08:01 B2M MHCI -5867 chip0423_811682 11.29 7.18 Chip2 T1D_6 T1D TGTGCAGCAAGCAAGATAGAGGAGGAGGTGCTGACGGACTCACCTTT CAASKIEga?GGADGLTF TRAV23/DV6*01 TRAJ45*01 36.0 1966.0 TGTGCCAGCAGCTTGGGACAGGCCTACGAGCAGTACTTC CASSLGQAYEQYF TRBV7-8*01 TRBJ2-7*01 56.0 2854.0 CAASKIEga?GGADGLTF_CASSLGQAYEQYF 8 5865 EBNA3A-193-201 EBV 0.72 1022 NEG 271 5594 10 EBV EBNA3A FLRGRAYGL effector memory T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-B*08:01 B2M MHCI -5868 chip0423_712240 14.48 8.41 Chip2 T1D_4 T1D TGTGCTGTCAATTCAGGAAACACACCTCTTGTCTTT CAVNSGNTPLVF TRAV1-2*01 TRAJ29*01 21.0 1679.0 TGTGCCAGCAGCCCTGTCAGCTCCCCGGGGGGTGGCTACACCTTC CASSPVSSPGGGYTF TRBV14*01 TRBJ1-2*01 28.0 503.0 CAVNSGNTPLVF_CASSPVSSPGGGYTF 1 4138 EBNA3A-158-166 EBV 0.42 444 NEG 253 3885 12 EBV EBNA3A QAKWRLQTL effector T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-B*08:01 B2M MHCI -5869 chip0423_75445 12.35 12.99 Chip2 T1D_5 T1D TGTGCAATGAGGACCATTGAGGGGGCAAACAACCTCTTCTTT CAMRTIEGANNLFF TRAV14/DV4*01 TRAJ36*01 38.0 2098.0 CAMRTIEGANNLFF_ 1 3426 BZLF1-190-197 EBV 0.67 2156 NEG 227 3199 11 EBV BZLF1 RAKFKQLL effector T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-B*08:01 B2M MHCI -5870 chip0423_453402 15.66 9.44 Chip2 T1D_6 T1D TGCGCCAGCAGTCTCCCTCCATGGGGCTGCCTACAATGAGCAGTTCTTC CASSLPPW??gAAYNEQFF TRBV4-3*01 TRBJ2-1*01 87.0 6938.0 _CASSLPPW??gAAYNEQFF 9 3592 EBNA3A-193-201 EBV 0.67 1022 NEG 255 3337 12 EBV EBNA3A FLRGRAYGL effector T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-B*08:01 B2M MHCI -5871 chip0423_279363 7.04 13.73 Chip2 T1D_6 T1D TGTGCAGGCGCTACTGGCAACACAGGCAAACTAATCTTT CAGATGNTGKLIF TRAV27*01 TRAJ37*01 6.0 242.0 CAGATGNTGKLIF_ 1 3987 M1 FLU 0.6 1250 NEG 191 3796 7 InfluenzaA M1 GILGFVFTL transitional T cells between effector and memory populations PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*02:01 B2M MHCI -5872 chip0423_6128 -2.04 9.02 Chip2 T1D_5 T1D TGTGCCAGCAACTTAGCCACTGAAGCTTTCTTT CASNLATEAFF TRBV7-9*01 TRBJ1-1*01 16.0 996.0 _CASNLATEAFF 1 8394 NP140-148 FLU 0.64 102 NEG 207 8187 3 InfluenzaA NP HSNLNDATY Naive T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*01:01 B2M MHCI -5873 chip0423_237707 5.69 8.59 Chip2 T1D_4 T1D TGTGCTGTGCTCCAGGATAGCAACTATCAGTTAATCTGG CAVLQDSNYQLIW TRAV21*01 TRAJ33*01 59.0 4170.0 TGCGCCAGCAGTGATGACGGAATGAACACTGAAGCTTTCTTT CASSDDGMNTEAFF TRBV10-2*01 TRBJ1-1*01 62.0 2718.0 CAVLQDSNYQLIW_CASSDDGMNTEAFF 8 9242 EBV-LMP2A EBV 0.78 700 EBV-LMP2A 256 8986 6 EBV LMP2A CLGGLLTMV central memory T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*02:01 B2M MHCI -5874 chip0423_193680 10.5 7.12 Chip2 T1D_4 T1D TGTGCCAGCAGCTTAGCGGTCGGAGAAGGGCCCCAGCATTTT CASSLAVGEGPQHF TRBV7-9*01 TRBJ1-5*01 40.0 1628.0 _CASSLAVGEGPQHF 113 5519 BZLF1-190-197 EBV 0.85 2156 BZLF1-190-197 239 5280 10 EBV BZLF1 RAKFKQLL effector memory T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-B*08:01 B2M MHCI -5875 chip0423_6462 7.1 9.84 Chip2 T1D_6 T1D TGTGCTCCGGAGGGTGGTTCCGTATACCGCCCCCTCACCTTT CAPEGGSVYRPLTF TRAV17*01 TRAJ11*01 34.0 1831.0 CAPEGGSVYRPLTF_ 1 9532 EBV-LMP2-FLY EBV 0.76 355 EBV-LMP2-FLY 242 9290 8 EBV LMP2 FLYALALLL effector memory T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*02:01 B2M MHCI -5876 chip0423_261484 9.97 7.3 Chip2 T1D_4 T1D TGCATCGTCAGAGAGGGAGGAGGTGCTGACGGACTCACCTTT CIVREGGGADGLTF TRAV26-1*01 TRAJ45*01 27.0 1571.0 TGTGCCAGCAGCTTAGCGGTCGGAGAAGGGCCCCAGCATTTT CASSLAVGEGPQHF TRBV7-9*01 TRBJ1-5*01 100.0 4218.0 CIVREGGGADGLTF_CASSLAVGEGPQHF 68 5979 BZLF1-190-197 EBV 0.57 2156 BZLF1-190-197 253 5726 10 EBV BZLF1 RAKFKQLL effector memory T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-B*08:01 B2M MHCI -5877 chip0423_222504 11.15 8.08 Chip2 T1D_4 T1D TGTGCTGTGGGGGCTGGTGGGGGTGCCCGGATGCTGGTATTT CAVGAGGGARMLVF TRAV8-6*01 TRAJ54*01 20.0 1713.0 TGTGCTGTTGGTGATGGAGTAGGAGCCCAGAATCTAGTATTT CAVGDGVGAQNLVF TRAV8-6*01 TRAJ54*01 10.0 41.0 0.23 CAVGAGGGARMLVF_ 1 3619 BZLF1-190-197 EBV 0.95 2156 BZLF1-190-197 234 3385 10 EBV BZLF1 RAKFKQLL effector memory T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-B*08:01 B2M MHCI -5878 chip0423_101372 -1.11 10.46 Chip2 T1D_5 T1D _ 6746 5417 PTPRN-HAR-8 PTPRN 0.6 13 NEG 227 5190 3 HomoSapiens PTPRN HARIKLKV Naive T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-B*08:01 B2M MHCI -5879 chip0423_251374 14.18 10.12 Chip2 T1D_5 T1D TGTGCAGAGATGGAAACCTCCTACGACAAGGTGATATTT CAEMETSYDKVIF TRAV13-2*01 TRAJ50*01 82.0 3796.0 TGTGCCAGCAGCTCCTTAAGCGGGGGGGCAGGAAATGAGCAGTTCTTC CASSSLSGGAGNEQFF TRBV7-9*01 TRBJ2-1*01 74.0 2427.0 CAEMETSYDKVIF_CASSSLSGGAGNEQFF 27 2870 BZLF1-190-197 EBV 0.58 2156 NEG 219 2651 12 EBV BZLF1 RAKFKQLL effector T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-B*08:01 B2M MHCI -5880 chip0423_114126 6.47 12.58 Chip2 healthy_3 healthy TGCGCTGACACGAATTCTGGGGGTTACCAGAAAGTTACCTTT CADTNSGGYQKVTF TRAV1-1*01 TRAJ13*01 75.0 5038.0 CADTNSGGYQKVTF_ 2 6872 NP44-52 FLU 0.69 474 NP44-52 221 6651 7 InfluenzaA NP CTELKLSDY transitional T cells between effector and memory populations PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*01:01 B2M MHCI -5881 chip0423_33511 7.24 12.68 Chip2 T1D_5 T1D TGTGCTCTGAGTTTCTCAGGATACAGCACCCTCACCTTT CALSFSGYSTLTF TRAV9-2*01 TRAJ11*01 20.0 1638.0 TGTGCCAGCACCGGCCCGGGACAGGGGCCTACGTCGTTTGAGCAGTTCTTC CASTGPGQGPTSFEQFF TRBV2*01 TRBJ2-1*01 42.0 2570.0 CALSFSGYSTLTF_CASTGPGQGPTSFEQFF 1 4563 ZNT8-YAK-9 ZNT8 0.5 59 NEG 219 4344 7 HomoSapiens ZNT8 YAKWKLCSA transitional T cells between effector and memory populations PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-B*08:01 B2M MHCI -5882 chip0423_306474 15.95 10.18 Chip2 T1D_4 T1D TGTGCAGCAAGTGAACGGAGGAAGCCAAGGAATTCTCTTCTTT CAASERR??aSQGILFF TRAV23/DV6*01 TRAJ42*01 38.0 1978.0 TGCAGCGTTGGAACGGGGGGAACTAATGAAAAACTGTTTTTT CSVGTGGTNEKLFF TRBV29-1*01 TRBJ1-4*01 134.0 10266.0 CAASERR??aSQGILFF_CSVGTGGTNEKLFF 1 3249 EBV-BLMF1 EBV 0.4 2531 NEG 223 3026 12 EBV BLMF1 GLCTLVAML effector T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*02:01 B2M MHCI -5883 chip0423_807061 7.09 10.36 Chip2 healthy_3 healthy TGTGCCAGCAGTGAAACGTGGGGAGCACCCCTCCACTTT CASSETWGAPLHF TRBV2*01 TRBJ1-6*01 8.0 370.0 _CASSETWGAPLHF 1 9403 NP44-52 FLU 0.69 474 NP44-52 258 9145 7 InfluenzaA NP CTELKLSDY transitional T cells between effector and memory populations PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*01:01 B2M MHCI -5884 chip0423_248230 -0.85 7.98 Chip2 T1D_6 T1D TGTCCTGGGAGTGACGCATAACCAGGGTGGAAAACCTATGTTC CPGSDA*??cQGGKPMF TRAV8-6*01 TRAJ23*01 11.0 1073.0 TGTGCCAGCAGCTTACCCTCGCTAGAGTTCGGTTACGAGCAGTACTTC CASSLPSLEFGYEQYF TRBV11-2*01 TRBJ2-7*01 32.0 1161.0 CPGSDA*??cQGGKPMF_CASSLPSLEFGYEQYF 1 10254 EBNA3A-158-166 EBV 0.44 444 EBNA3A-158-166 218 10036 3 EBV EBNA3A QAKWRLQTL Naive T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-B*08:01 B2M MHCI -5885 chip0423_772008 6.19 12.54 Chip2 T1D_6 T1D TGTGCTGTGCCGGACAGCAATGCAGGCAAATCAACCTTT CAVPDSNAGKSTF TRAV21*01 TRAJ27*01 26.0 1985.0 CAVPDSNAGKSTF_ 1 7336 M1 FLU 0.49 1250 M1 262 7074 7 InfluenzaA M1 GILGFVFTL transitional T cells between effector and memory populations PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*02:01 B2M MHCI -5886 chip0423_684997 8.45 9.14 Chip2 T1D_6 T1D TGTGCCAGCAGCCAAAGCCCAGGGGGCATAGCTTTCTTT CASSQSPGGIAFF TRBV14*01 TRBJ1-1*01 16.0 652.0 _CASSQSPGGIAFF 16 10291 EBV-BLMF1 EBV 0.44 2531 NEG 247 10044 8 EBV BLMF1 GLCTLVAML effector memory T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*02:01 B2M MHCI -5887 chip0423_277749 14.21 10.0 Chip2 T1D_5 T1D TGTGCAGAGATGGAAACCTCCTACGACAAGGTGATATTT CAEMETSYDKVIF TRAV13-2*01 TRAJ50*01 77.0 4897.0 TGTGCCAGCAGCTCCTTAAGCGGGGGGGCAGGAAATGAGCAGTTCTTC CASSSLSGGAGNEQFF TRBV7-9*01 TRBJ2-1*01 49.0 2940.0 CAEMETSYDKVIF_CASSSLSGGAGNEQFF 27 6020 BZLF1-190-197 EBV 0.56 2156 NEG 262 5758 12 EBV BZLF1 RAKFKQLL effector T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-B*08:01 B2M MHCI -5888 chip0423_586743 6.41 11.37 Chip2 T1D_4 T1D _ 6746 9179 M1 FLU 0.65 1250 M1 217 8962 7 InfluenzaA M1 GILGFVFTL transitional T cells between effector and memory populations PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*02:01 B2M MHCI -5889 chip0423_233742 11.62 7.63 Chip2 T1D_4 T1D TGTGCTGTGAGTGATGGAGAAGGAGCCCAGAAGCTGGTATTT CAVSDGEGAQKLVF TRAV8-6*01 TRAJ54*01 27.0 1506.0 TGTGCCAGCAGCTTAACGGTTCTGGCAGGTCCAAACACTGAAGCTTTCTTT CASSLTVLAGPNTEAFF TRBV7-3*01 TRBJ1-1*01 59.0 1742.0 CAVSDGEGAQKLVF_CASSLTVLAGPNTEAFF 44 3477 BZLF1-190-197 EBV 0.79 2156 NEG 229 3248 10 EBV BZLF1 RAKFKQLL effector memory T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-B*08:01 B2M MHCI -5890 chip0423_448081 5.81 13.38 Chip2 T1D_4 T1D TGTGCAGGGAATTATGGAGGAAGCCAAGGAAATCTCATCTTT CAGNYGGSQGNLIF TRAV25*01 TRAJ42*01 27.0 2032.0 TGTGCCAGTAGTACTCGATCCACCGGGGAGCTGTTTTTT CASSTRSTGELFF TRBV19*01 TRBJ2-2*01 21.0 984.0 CAGNYGGSQGNLIF_CASSTRSTGELFF 2 7525 M1 FLU 0.81 1250 M1 253 7272 7 InfluenzaA M1 GILGFVFTL transitional T cells between effector and memory populations PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*02:01 B2M MHCI -5891 chip0423_534162 -1.68 8.03 Chip2 T1D_6 T1D TGTGCTCTGAGTGAGGACAGCTGGGGGAAATTGCAGTTT CALSEDSWGKLQF TRAV19*01 TRAJ24*01 14.0 988.0 TGTGCCAGTGGGTTTATGAACACTGAAGCTTTCTTT CASGFMNTEAFF TRBV19*01 TRBJ1-1*01 77.0 3635.0 CALSEDSWGKLQF_CASGFMNTEAFF 1 8772 EBV-LMP2A EBV 0.58 700 EBV-LMP2A 230 8542 3 EBV LMP2A CLGGLLTMV Naive T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*02:01 B2M MHCI -5892 chip0423_27049 10.34 6.59 Chip2 T1D_4 T1D TGTGCTCCCGTGTCCGACAATGACATGCGCTTT CAPVSDNDMRF TRAV16*01 TRAJ43*01 23.0 2444.0 TGTGCCAGCAGCTTAGTGGTTAGCCACGGGGAGCTGTTTTTT CASSLVVSHGELFF TRBV7-2*01 TRBJ2-2*01 45.0 2360.0 CAPVSDNDMRF_CASSLVVSHGELFF 1 9608 BZLF1-190-197 EBV 0.56 2156 NEG 247 9361 10 EBV BZLF1 RAKFKQLL effector memory T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-B*08:01 B2M MHCI -5893 chip0423_681841 8.57 11.15 Chip2 T1D_4 T1D TGTGCAATGAGCGAGGACGGCTTT CAMSEDGF TRAV12-3*01 TRAJ37*01 10.0 720.0 TGTGCCAGCAGCCCGGGACCCAACACTGAAGCTTTCTTT CASSPGPNTEAFF TRBV4-2*01 TRBJ1-1*01 48.0 2329.0 CAMSEDGF_CASSPGPNTEAFF 11 5099 BZLF1-190-197 EBV 0.45 2156 NEG 244 4855 9 EBV BZLF1 RAKFKQLL effector memory T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-B*08:01 B2M MHCI -5894 chip0423_881637 12.62 10.34 Chip2 T1D_5 T1D TGTGCCAGCAGCTGGCTCGGGGATCGGTATAATTCACCCCTCCACTTT CASSWLGDRYNSPLHF TRBV7-9*01 TRBJ1-6*01 62.0 2198.0 _CASSWLGDRYNSPLHF 44 4722 BZLF1-190-197 EBV 0.4 2156 NEG 247 4475 9 EBV BZLF1 RAKFKQLL effector memory T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-B*08:01 B2M MHCI -5895 chip0423_677705 11.19 10.88 Chip2 T1D_5 T1D TGTGCAGCGGCGGAAACCTCCTACGACAAGGTGATATTT CAAAETSYDKVIF TRAV13-1*01 TRAJ50*01 21.0 2072.0 TGTGCCAGCCAACTAGCGGGAGGCACCGGGGAGCTGTTTTTT CASQLAGGTGELFF TRBV24-1*01 TRBJ2-2*01 36.0 1794.0 CAAAETSYDKVIF_CASQLAGGTGELFF 131 3151 BZLF1-190-197 EBV 0.83 2156 NEG 236 2915 9 EBV BZLF1 RAKFKQLL effector memory T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-B*08:01 B2M MHCI -5896 chip0423_540470 12.79 7.04 Chip2 T1D_6 T1D TGCATCCTCCCACTTGCTGGTGGTACTAGTTATGGAAAGCTGACATTT CILPLAGGTSYGKLTF TRAV4*01 TRAJ52*01 3.0 129.0 TGTGCCAGCAGCTTGGGACAGGCCTACGAGCAGTACTTC CASSLGQAYEQYF TRBV7-8*01 TRBJ2-7*01 22.0 1250.0 CILPLAGGTSYGKLTF_CASSLGQAYEQYF 308 4302 EBNA3A-193-201 EBV 0.87 1022 NEG 266 4036 10 EBV EBNA3A FLRGRAYGL effector memory T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-B*08:01 B2M MHCI -5897 chip0423_836078 8.9 11.23 Chip2 T1D_4 T1D TGTGCTACGGAAGGCGGTTCCGGATACAGCACCCTCACCTTT CATEGGSGYSTLTF TRAV17*01 TRAJ11*01 86.0 3747.0 TGTGCCAGCAGCTACCAGGGCGGGTCCTATGGCTACACCTTC CASSYQGGSYGYTF TRBV6-5*01 TRBJ1-2*01 47.0 2050.0 CATEGGSGYSTLTF_CASSYQGGSYGYTF 1 5231 EBV-LMP2-FLY EBV 0.41 355 NEG 239 4992 7 EBV LMP2 FLYALALLL transitional T cells between effector and memory populations PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*02:01 B2M MHCI -5898 chip0423_223134 5.28 12.0 Chip2 T1D_4 T1D _ 6746 6087 PGT-178 PGT 0.9 1480 PGT-178 237 5850 6 HomoSapiens PGT LLAGIGTVPI central memory T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*02:01 B2M MHCI -5899 chip0423_45025 8.64 9.16 Chip2 T1D_6 T1D TGCAGCGCCGGCAGGGACGGGACTAATGAAAAACTGTTTTTT CSAGRDGTNEKLFF TRBV29-1*01 TRBJ1-4*01 128.0 6354.0 _CSAGRDGTNEKLFF 159 9600 EBV-BLMF1 EBV 0.57 2531 NEG 269 9331 8 EBV BLMF1 GLCTLVAML effector memory T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*02:01 B2M MHCI -5900 chip0423_197538 15.32 8.84 Chip2 T1D_6 T1D TGCAGCGCCGGCAGGGACGGGACTAATGAAAAACTGTTTTTT CSAGRDGTNEKLFF TRBV29-1*01 TRBJ1-4*01 198.0 6506.0 _CSAGRDGTNEKLFF 159 3254 EBV-BLMF1 EBV 0.67 2531 NEG 266 2988 12 EBV BLMF1 GLCTLVAML effector T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*02:01 B2M MHCI -5901 chip0423_202070 9.34 10.49 Chip2 T1D_5 T1D TGTGCAATGAGGGCCATCGAGGGGGCAAACAACCTCTTCTTT CAMRAIEGANNLFF TRAV14/DV4*01 TRAJ36*01 40.0 1973.0 TGCGCCAACAGCCTCAGTTCGGGGGGCCGTGGCGAGCAGTACTTC CANSLSSGGRGEQYF TRBV4-1*01 TRBJ2-7*01 22.0 1160.0 CAMRAIEGANNLFF_CANSLSSGGRGEQYF 1 4228 BZLF1-190-197 EBV 0.82 2156 NEG 247 3981 9 EBV BZLF1 RAKFKQLL effector memory T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-B*08:01 B2M MHCI -5902 chip0423_732371 -0.27 7.11 Chip2 T1D_5 T1D TGTGCTTATAGCCAGATGGATAGCAGCTATAAATTGATCTTC CAYSQMDSSYKLIF TRAV38-1*01 TRAJ12*01 1.0 36.0 TGCGCCAGTAACACAGGGACAGGGGAGGACTATGGCTACACCTTC CASNTGTGEDYGYTF TRBV5-1*01 TRBJ1-2*01 27.0 1087.0 CAYSQMDSSYKLIF_CASNTGTGEDYGYTF 1 10772 PB1-590-599 FLU 0.45 37 PB1-590-599 227 10545 3 InfluenzaA PB1 LVSDGGPNLY Naive T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*01:01 B2M MHCI -5903 chip0423_74534 10.77 6.82 Chip2 T1D_4 T1D TGTGCCAGCAGCCAAGTCAACAACCCGGGGGATGGCTACACCTTC CASSQVNNPGDGYTF TRBV14*01 TRBJ1-2*01 18.0 457.0 _CASSQVNNPGDGYTF 94 6710 EBNA3A-158-166 EBV 0.77 444 NEG 231 6479 10 EBV EBNA3A QAKWRLQTL effector memory T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-B*08:01 B2M MHCI -5904 chip0423_507915 16.29 10.05 Chip2 tet_neg TGTGCTACGGCCGCGCCCGACCGCGGCCCAACCCTGGGCAGGCTATACCTT CATAAPDRGPTLGRLYL TRAV17*01 TRAJ18*01 49.0 1419.0 CATAAPDRGPTLGRLYL_ 1 3167 G6PC2-LTS-10 IGRP 0.88 59 NEG 240 2927 12 HomoSapiens G6PC2 LTSLTILQLY effector T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*01:01 B2M MHCI -5905 chip0423_36021 12.76 6.76 Chip2 T1D_6 T1D TGCCTCGTGGGTGCGTCATATTATAACCAGGGAGGAAAGCTTATCTTC CLVGASYYNQGGKLIF TRAV4*01 TRAJ23*01 51.0 1930.0 TGTGCCAGCAGCTTGGGACAGGCCTACGAGCAGTACTTC CASSLGQAYEQYF TRBV7-8*01 TRBJ2-7*01 42.0 1853.0 CLVGASYYNQGGKLIF_CASSLGQAYEQYF 1 4983 EBNA3A-193-201 EBV 0.62 1022 EBNA3A-193-201 266 4717 10 EBV EBNA3A FLRGRAYGL effector memory T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-B*08:01 B2M MHCI -5906 chip0423_849827 -0.38 6.4 Chip2 T1D_6 T1D TGTGCTGTGAGAGACCCAGAAACGAAAACCTCCTACGACAAAGTGATATTT CAVRDPETKTSYDKVIF TRAV3*01 TRAJ50*01 68.0 3249.0 TGTGCCAGCAGTTTAAGGTTTGGGCAGCCCCAGCATTTT CASSLRFGQPQHF TRBV12-3*01,TRBV12-4*01 TRBJ1-5*01 48.0 2157.0 CAVRDPETKTSYDKVIF_CASSLRFGQPQHF 1 10303 NP140-148 FLU 0.51 102 NP140-148 233 10070 3 InfluenzaA NP HSNLNDATY Naive T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*01:01 B2M MHCI -5907 chip0423_115499 11.35 10.02 Chip2 T1D_4 T1D TGTGCCAGCAGCCAAGTCAACAACCCGGGGGATGGCTACACCTTC CASSQVNNPGDGYTF TRBV14*01 TRBJ1-2*01 14.0 343.0 _CASSQVNNPGDGYTF 94 4612 EBNA3A-158-166 EBV 0.65 444 EBNA3A-158-166 229 4383 9 EBV EBNA3A QAKWRLQTL effector memory T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-B*08:01 B2M MHCI -5908 chip0423_354664 11.03 9.07 Chip2 T1D_4 T1D TGTGCTGTGAGTGATGGAGAAGGAGCCCAGAAGCTGGTATTT CAVSDGEGAQKLVF TRAV8-6*01 TRAJ54*01 175.0 7905.0 TGTGCCAGCAGCTTAACGGTTCTGGCAGGTCCAAACACTGAAGCTTTCTTT CASSLTVLAGPNTEAFF TRBV7-3*01 TRBJ1-1*01 91.0 2741.0 CAVSDGEGAQKLVF_CASSLTVLAGPNTEAFF 44 5741 BZLF1-190-197 EBV 0.91 2156 BZLF1-190-197 250 5491 10 EBV BZLF1 RAKFKQLL effector memory T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-B*08:01 B2M MHCI -5909 chip0423_469891 -4.11 8.37 Chip2 healthy_3 healthy TGTGCAGTTAACACCGACACGCTCATCTTT CAVNTDTLIF TRAV23/DV6*01 TRAJ34*01 5.0 548.0 TGTGCCAGCAGTGAAGCGCTTTTGGGTTTGGATGAGCAGTTCTTC CASSEALLGLDEQFF TRBV2*01 TRBJ2-1*01 73.0 2566.0 CAVNTDTLIF_CASSEALLGLDEQFF 1 6248 PGT-178 PGT 0.74 1480 PGT-178 225 6023 2 HomoSapiens PGT LLAGIGTVPI Naive T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*02:01 B2M MHCI -5910 chip0423_208198 9.56 7.9 Chip2 T1D_4 T1D TGCATCGTCAGAGAGGGAGGAGATGCTGACGGACTCACCTTT CIVREGGDADGLTF TRAV26-1*01 TRAJ45*01 4.0 74.0 TGTGCCAGCAGCTTAGCGGTCGGAGAAGGGCCCCAGCATTTT CASSLAVGEGPQHF TRBV7-9*01 TRBJ1-5*01 79.0 3053.0 CIVREGGDADGLTF_CASSLAVGEGPQHF 2 5359 BZLF1-190-197 EBV 0.9 2156 BZLF1-190-197 284 5075 8 EBV BZLF1 RAKFKQLL effector memory T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-B*08:01 B2M MHCI -5911 chip0423_32496 9.88 6.87 Chip2 T1D_5 T1D TGCGCCAGCAGCCACCAGGAGGGGGCCATTCAGCCCCAGCATTTT CASSHQEGAIQPQHF TRBV4-1*01 TRBJ1-5*01 46.0 1751.0 _CASSHQEGAIQPQHF 1 7094 BZLF1-190-197 EBV 0.9 2156 BZLF1-190-197 252 6842 10 EBV BZLF1 RAKFKQLL effector memory T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-B*08:01 B2M MHCI -5912 chip0423_670010 7.03 10.56 Chip2 healthy_4 healthy TGTGTGGTAAACCCCTCTAGAGGTAAAGCTGCCGGCAACTCGCTAACTTTT CVVNPSRGKAAGNSLTF TRAV12-1*01 TRAJ17*01 2.0 83.0 TGTGCCAGTAGCACCCGTAGTGCCTACGAGCAGTACTTC CASSTRSAYEQYF TRBV19*01 TRBJ2-7*01 5.0 206.0 CVVNPSRGKAAGNSLTF_CASSTRSAYEQYF 1 6068 M1 FLU 0.6 1250 NEG 251 5817 7 InfluenzaA M1 GILGFVFTL transitional T cells between effector and memory populations PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*02:01 B2M MHCI -5913 chip0423_581044 13.19 10.7 Chip2 T1D_5 T1D TGTGCAGCAGCGGAAACCTCCTACGACAAGGTGATATTT CAAAETSYDKVIF TRAV13-1*01 TRAJ50*01 50.0 4420.0 TGTGCCGGCCAACTAGCGGGAGGCACCGGGGCGCTGTTTTTT CAGQLAGGTGALFF TRBV24-1*01 TRBJ2-2*01 6.0 217.0 CAAAETSYDKVIF_CAGQLAGGTGALFF 1 3766 BZLF1-190-197 EBV 0.8 2156 NEG 230 3536 9 EBV BZLF1 RAKFKQLL effector memory T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-B*08:01 B2M MHCI -5914 chip0423_546632 11.32 8.19 Chip2 T1D_4 T1D TGCAGCGCGGGAAATGGGGAGGGCTACGAGCAGTACTTC CSAGNGEGYEQYF TRBV29-1*01 TRBJ2-7*01 101.0 6999.0 _CSAGNGEGYEQYF 1 4536 BZLF1-190-197 EBV 0.62 2156 NEG 275 4261 10 EBV BZLF1 RAKFKQLL effector memory T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-B*08:01 B2M MHCI -5915 chip0423_113899 10.41 6.92 Chip2 T1D_4 T1D TGTGCCGTGAATCGCAACTATCAATTAATCTGG CAVNRNYQLIW TRAV8-1*01 TRAJ33*01 25.0 2080.0 TGTGCCAGCAGAGGACAGCTGGGCGGCAATCAGCCCCAGCATTTT CASRGQLGGNQPQHF TRBV28*01 TRBJ1-5*01 23.0 852.0 CAVNRNYQLIW_CASRGQLGGNQPQHF 1 7091 EBV-BRLF1 EBV 0.65 1264 EBV-BRLF1 277 6814 10 EBV BRLF1 YVLDHLIVV effector memory T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*02:01 B2M MHCI -5916 chip0423_464862 14.04 10.99 Chip2 T1D_5 T1D TGTGCAGCATCAGAAACCTCCTACGACAAGGTGATATTT CAASETSYDKVIF TRAV13-1*01 TRAJ50*01 23.0 971.0 TGTGCCAGCAGCCGCTTGGGGGGGGAGACCGGGGAGCTGTTTTTT CASSRLGGETGELFF TRBV7-2*01 TRBJ2-2*01 75.0 2835.0 CAASETSYDKVIF_CASSRLGGETGELFF 3 3649 BZLF1-190-197 EBV 0.75 2156 NEG 245 3404 12 EBV BZLF1 RAKFKQLL effector T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-B*08:01 B2M MHCI -5917 chip0423_84171 11.63 6.62 Chip2 T1D_4 T1D TGTGCCAGCAGTTTAACGGGGCCCATACCCAGCACAGATACGCAGTATTTT CASSLTGPIPSTDTQYF TRBV27*01 TRBJ2-3*01 7.0 175.0 _CASSLTGPIPSTDTQYF 2 6109 EBNA3A-158-166 EBV 0.43 444 NEG 233 5876 10 EBV EBNA3A QAKWRLQTL effector memory T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-B*08:01 B2M MHCI -5918 chip0423_49658 5.49 8.82 Chip2 T1D_4 T1D TGTGCTCTCACTACCTATGGTCAGAATTTTGTCTTT CALTTYGQNFVF TRAV38-1*01 TRAJ26*01 26.0 2458.0 TGCAGTGCCTCTCGTGACTCCTACGAGCAGTACTTC CSASRDSYEQYF TRBV20-1*01 TRBJ2-7*01 62.0 5598.0 CALTTYGQNFVF_CSASRDSYEQYF 15 8570 EBV-LMP1-1 EBV 0.52 237 NEG 240 8330 6 EBV LMP1 YLLEMLWRL central memory T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*02:01 B2M MHCI -5919 chip0423_719877 10.34 6.68 Chip2 T1D_5 T1D TGTGCAGCCACGGAAACCTCCTACGACAAGGTGATATTT CAATETSYDKVIF TRAV13-1*01 TRAJ50*01 4.0 151.0 TGCAGCGCAGGGGGCAACACTGAAGCTTTCTTT CSAGGNTEAFF TRBV29-1*01 TRBJ1-1*01 180.0 13986.0 CAATETSYDKVIF_CSAGGNTEAFF 2 7384 BZLF1-190-197 EBV 0.79 2156 BZLF1-190-197 251 7133 10 EBV BZLF1 RAKFKQLL effector memory T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-B*08:01 B2M MHCI -5920 chip0423_161405 14.46 11.42 Chip2 T1D_5 T1D TGTGCCAGCAGCGTCCTTGGCGGCACTTCCACTGAAGCTTTCTTT CASSVLGGTSTEAFF TRBV7-9*01 TRBJ1-1*01 31.0 901.0 _CASSVLGGTSTEAFF 1 2263 BZLF1-190-197 EBV 0.42 2156 NEG 219 2044 12 EBV BZLF1 RAKFKQLL effector T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-B*08:01 B2M MHCI -5921 chip0423_79916 12.43 10.37 Chip2 T1D_5 T1D _ 6746 3220 BZLF1-190-197 EBV 0.81 2156 BZLF1-190-197 231 2989 9 EBV BZLF1 RAKFKQLL effector memory T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-B*08:01 B2M MHCI -5922 chip0423_565864 13.37 6.93 Chip2 T1D_6 T1D TGCAGCGCCGGCAGGGACGGGACTAATGAAAAACTGTTTTTT CSAGRDGTNEKLFF TRBV29-1*01 TRBJ1-4*01 258.0 14307.0 _CSAGRDGTNEKLFF 159 3588 EBV-BLMF1 EBV 0.56 2531 NEG 280 3308 10 EBV BLMF1 GLCTLVAML effector memory T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*02:01 B2M MHCI -5923 chip0423_222377 9.51 8.0 Chip2 T1D_4 T1D _ 6746 5610 BZLF1-190-197 EBV 0.88 2156 BZLF1-190-197 246 5364 8 EBV BZLF1 RAKFKQLL effector memory T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-B*08:01 B2M MHCI -5924 chip0423_745887 9.36 7.33 Chip2 T1D_4 T1D TGTGCCAGCAGCTTAGCGGTCGGAGAAGGGCCCCAGCATTTT CASSLAVGEGPQHF TRBV7-9*01 TRBJ1-5*01 108.0 5438.0 _CASSLAVGEGPQHF 113 7376 BZLF1-190-197 EBV 0.83 2156 BZLF1-190-197 269 7107 8 EBV BZLF1 RAKFKQLL effector memory T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-B*08:01 B2M MHCI -5925 chip0423_76575 12.02 7.76 Chip2 T1D_6 T1D TGCATCCTCCCACTTGCTGGTGGTACTAGCTATGGAAAGCTGACATTT CILPLAGGTSYGKLTF TRAV26-2*01 TRAJ52*01 27.0 1217.0 TGTGCCAGCAGCTTGGGACAGGCCTACGAGCAGTACTTC CASSLGQAYEQYF TRBV7-8*01 TRBJ2-7*01 60.0 3613.0 CILPLAGGTSYGKLTF_CASSLGQAYEQYF 308 5687 EBNA3A-193-201 EBV 0.75 1022 EBNA3A-193-201 238 5449 10 EBV EBNA3A FLRGRAYGL effector memory T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-B*08:01 B2M MHCI -5926 chip0423_384366 5.81 12.12 Chip2 T1D_5 T1D TGTGCCGTGAACATGCCTACTGGAGCCAATAGTAAGCTGACATTT CAVNMPTGANSKLTF TRAV12-2*01 TRAJ56*01 78.0 3849.0 TGCAGTGCTAGAGAGGGGGGCGTAGCCGAAGACTACAATGAGCAGTTCTTC CSAREGGVAEDYNEQFF TRBV20-1*01 TRBJ2-1*01 48.0 3123.0 CAVNMPTGANSKLTF_CSAREGGVAEDYNEQFF 1 4814 GAD2-STA-10 GAD65 0.87 7 GAD2-STA-10 205 4609 7 HomoSapiens GAD2 STANTNMFTY transitional T cells between effector and memory populations PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*01:01 B2M MHCI -5927 chip0423_441621 11.3 6.75 Chip2 T1D_4 T1D TGTGCTCTCACTACCTATGGTCAGAATTTTGTCTTT CALTTYGQNFVF TRAV38-1*01 TRAJ26*01 14.0 1334.0 TGCAGTGCCTCTCGTGACTCCTACGAGCAGTACTTC CSASRDSYEQYF TRBV20-1*01 TRBJ2-7*01 72.0 6045.0 CALTTYGQNFVF_CSASRDSYEQYF 15 6570 EBV-LMP1-1 EBV 0.7 237 NEG 262 6308 10 EBV LMP1 YLLEMLWRL effector memory T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*02:01 B2M MHCI -5928 chip0423_406028 11.06 7.54 Chip2 T1D_6 T1D TGTGCCAGCAGCTTGGGACAGGCCTACGAGCAGTACTTC CASSLGQAYEQYF TRBV7-8*01 TRBJ2-7*01 38.0 2122.0 _CASSLGQAYEQYF 175 6808 EBNA3A-193-201 EBV 0.68 1022 EBNA3A-193-201 218 6590 10 EBV EBNA3A FLRGRAYGL effector memory T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-B*08:01 B2M MHCI -5929 chip0423_391394 15.38 12.75 Chip2 T1D_5 T1D TGTGCCAGCCAACTAGCGGGAGGCACCGGGGAGCTGTTTTTT CASQLAGGTGELFF TRBV24-1*01 TRBJ2-2*01 15.0 776.0 _CASQLAGGTGELFF 69 1590 BZLF1-190-197 EBV 0.83 2156 NEG 236 1354 12 EBV BZLF1 RAKFKQLL effector T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-B*08:01 B2M MHCI -5930 chip0423_651553 14.7 9.4 Chip2 T1D_4 T1D TGCATCGTCAGAGAGGGAGGAGGTGCTGACGGCCTCCCCTTT CIVREGGGADGLPF TRAV26-1*01 TRAJ45*01 64.0 3861.0 TGTGCCAGCAGCTTAGCGGTCGGAGAAGGGCCCCAGCATTTT CASSLAVGEGPQHF TRBV7-9*01 TRBJ1-5*01 19.0 486.0 CIVREGGGADGLPF_CASSLAVGEGPQHF 21 5461 BZLF1-190-197 EBV 0.68 2156 BZLF1-190-197 247 5214 12 EBV BZLF1 RAKFKQLL effector T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-B*08:01 B2M MHCI -5931 chip0423_181943 13.63 10.75 Chip2 T1D_5 T1D TGTGCAGCGGCGGAAACCTCCTACGACAAGGTGATATTT CAAAETSYDKVIF TRAV13-1*01 TRAJ50*01 63.0 5251.0 TGTGCCAGCCAACTAGCGGGAGGCACCGGGGAGCTGTTTTTT CASQLAGGTGELFF TRBV24-1*01 TRBJ2-2*01 46.0 2725.0 CAAAETSYDKVIF_CASQLAGGTGELFF 131 4239 BZLF1-190-197 EBV 0.62 2156 NEG 217 4022 12 EBV BZLF1 RAKFKQLL effector T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-B*08:01 B2M MHCI -5932 chip0423_598413 13.05 10.73 Chip2 T1D_5 T1D TGCAGCGTTGGGGGGAACACTGAAGCTTTCTTT CSVGGNTEAFF TRBV29-1*01 TRBJ1-1*01 77.0 5793.0 _CSVGGNTEAFF 8 4090 BZLF1-190-197 EBV 0.78 2156 NEG 235 3855 9 EBV BZLF1 RAKFKQLL effector memory T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-B*08:01 B2M MHCI -5933 chip0423_323614 8.05 7.96 Chip2 T1D_4 T1D TGTGCTGGCGGGGGGTTCGAGAGTGGAGGTAGCGACTATAAACTGACATTT CAGGGFESGGSDYKLTF TRAV21*01 TRAJ53*01 64.0 1616.0 TGCATCCTGAGAGGGGTGTGGCAACAACCGTAAGCTGATTTGG CILRGVW??cNNRKLIW TRAV26-2*01 TRAJ38*01 39.0 1998.0 0.27 TGCGCCAGCAGCCTGTACAATCCGAACACTGAAGCTTTCTTT CASSLYNPNTEAFF TRBV5-1*01 TRBJ1-1*01 94.0 3747.0 CAGGGFESGGSDYKLTF_CASSLYNPNTEAFF 1 9266 BZLF1-190-197 EBV 0.69 2156 BZLF1-190-197 233 9033 8 EBV BZLF1 RAKFKQLL effector memory T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-B*08:01 B2M MHCI -5934 chip0423_698504 8.02 8.16 Chip2 healthy_3 healthy TGTGCCAGCAGTGAAATGGGGGGAGCACCCCTCCACTTT CASSEMGGAPLHF TRBV2*01 TRBJ1-6*01 29.0 2156.0 _CASSEMGGAPLHF 1 13162 NP44-52 FLU 0.67 474 NP44-52 214 12948 8 InfluenzaA NP CTELKLSDY effector memory T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*01:01 B2M MHCI -5935 chip0423_816571 10.48 6.85 Chip2 T1D_6 T1D TGTGCCAGCAGCTTGGGACAGGCCTACGAGCAGTACTTC CASSLGQAYEQYF TRBV7-8*01 TRBJ2-7*01 52.0 2389.0 _CASSLGQAYEQYF 175 5653 EBNA3A-193-201 EBV 0.74 1022 NEG 286 5367 10 EBV EBNA3A FLRGRAYGL effector memory T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-B*08:01 B2M MHCI -5936 chip0423_459344 14.25 7.77 Chip2 T1D_6 T1D TGCATCCTCCCACTTGCTGGTGGTACTAGCTATGGAAAGCTGACATTT CILPLAGGTSYGKLTF TRAV26-2*01 TRAJ52*01 23.0 859.0 TGTGCCAGCAGCTTGGGACAGGCCTACGAGCAGTACTTC CASSLGQAYEQYF TRBV7-8*01 TRBJ2-7*01 37.0 1857.0 CILPLAGGTSYGKLTF_CASSLGQAYEQYF 308 4411 EBNA3A-193-201 EBV 0.65 1022 EBNA3A-193-201 260 4151 10 EBV EBNA3A FLRGRAYGL effector memory T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-B*08:01 B2M MHCI -5937 chip0423_644562 14.21 8.09 Chip2 T1D_5 T1D TGTGCCTTGAGGGCCCTTGTGGGGGCCAACAACCTCTTCTTT CALRALVGANNLFF TRAV14/DV4*01 TRAJ36*01 14.0 792.0 TGTGCCAGCAGCTTTACAGGGAACACCGGGGAGCTGTTTTTT CASSFTGNTGELFF TRBV7-9*01 TRBJ2-2*01 17.0 634.0 CALRALVGANNLFF_CASSFTGNTGELFF 1 5724 BZLF1-190-197 EBV 0.6 2156 BZLF1-190-197 266 5458 10 EBV BZLF1 RAKFKQLL effector memory T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-B*08:01 B2M MHCI -5938 chip0423_818170 14.81 10.71 Chip2 T1D_5 T1D TGTGCAGCAAAAGAAACCTCCTACGACAAGGTGATATTT CAAKETSYDKVIF TRAV13-1*01 TRAJ50*01 25.0 2133.0 TGTGCCAGCAGCTTATTAGGACGATCGAACACTGAAGCTTTCTTT CASSLLGRSNTEAFF TRBV7-9*01 TRBJ1-1*01 88.0 3172.0 CAAKETSYDKVIF_CASSLLGRSNTEAFF 13 3290 BZLF1-190-197 EBV 0.56 2156 NEG 263 3027 12 EBV BZLF1 RAKFKQLL effector T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-B*08:01 B2M MHCI -5939 chip0423_303384 10.28 7.13 Chip2 T1D_6 T1D TGTGCCAGCAGCTTGGGACAGGCCTACGAGCAGTACTTC CASSLGQAYEQYF TRBV7-8*01 TRBJ2-7*01 10.0 582.0 _CASSLGQAYEQYF 175 7326 EBNA3A-193-201 EBV 0.85 1022 EBNA3A-193-201 272 7054 10 EBV EBNA3A FLRGRAYGL effector memory T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-B*08:01 B2M MHCI -5940 chip0423_401765 10.78 9.01 Chip2 T1D_4 T1D TGTGCCAGCAGCCAAGTCAACAACCCGGGGGATGGCTACACCTTC CASSQVNNPGDGYTF TRBV14*01 TRBJ1-2*01 19.0 661.0 _CASSQVNNPGDGYTF 94 6242 EBNA3A-158-166 EBV 0.64 444 EBNA3A-158-166 268 5974 10 EBV EBNA3A QAKWRLQTL effector memory T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-B*08:01 B2M MHCI -5941 chip0423_178445 7.21 10.12 Chip2 T1D_4 T1D TGTGCTCTGAGTGAGGCGCTCTGGTATGCAGGCAACATGCTCACCTTT CALSEALWYAGNMLTF TRAV19*01 TRAJ39*01 45.0 2036.0 TGTGCCAGCAGCCGACAGAGTATCTACGAGCAGTACTTC CASSRQSIYEQYF TRBV28*01 TRBJ2-7*01 5.0 407.0 CALSEALWYAGNMLTF_CASSRQSIYEQYF 1 8185 EBNA3A-158-166 EBV 0.76 444 EBNA3A-158-166 220 7965 7 EBV EBNA3A QAKWRLQTL transitional T cells between effector and memory populations PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-B*08:01 B2M MHCI -5942 chip0423_525549 12.44 7.32 Chip2 T1D_5 T1D TGTGCCAGCAGTCCCGACGGATCCACCGGGGAGCTGTTTTTT CASSPDGSTGELFF TRBV12-3*01,TRBV12-4*01 TRBJ2-2*01 112.0 6928.0 _CASSPDGSTGELFF 10 2942 BZLF1-190-197 EBV 0.62 2156 NEG 220 2722 10 EBV BZLF1 RAKFKQLL effector memory T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-B*08:01 B2M MHCI -5943 chip0423_524777 15.77 9.51 Chip2 T1D_6 T1D TGCGCCAGCAGTCTCCCTCCATGGGGCTGCCTACAATGAGCAGTTCTTC CASSLPPW??gAAYNEQFF TRBV4-3*01 TRBJ2-1*01 56.0 3581.0 _CASSLPPW??gAAYNEQFF 9 3470 EBNA3A-193-201 EBV 0.45 1022 NEG 254 3216 12 EBV EBNA3A FLRGRAYGL effector T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-B*08:01 B2M MHCI -5944 chip0423_830428 6.68 14.48 Chip2 T1D_5 T1D TGTGCCAGTAGTATGATGACAGGGGATTCCTATAATTCACCCCTCCACTTT CASSMMTGDSYNSPLHF TRBV19*01 TRBJ1-6*01 3.0 79.0 _CASSMMTGDSYNSPLHF 3 3159 NP44-52 FLU 0.93 474 NP44-52 246 2913 7 InfluenzaA NP CTELKLSDY transitional T cells between effector and memory populations PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*01:01 B2M MHCI -5945 chip0423_174768 8.61 9.5 Chip2 T1D_4 T1D TGTGCTGTGCGCGCCCCGCCGTGGGCTGCCCCGATCATCTTT CAVRAPPWAAPIIF TRAV3*01 TRAJ30*01 61.0 3023.0 TGTGTGGTGAGCTGAATTATGGAGGAAGCCAAGGAAATCTCATCTTT CVVS*IMga?GSQGNLIF TRAV10*01 TRAJ42*01 56.0 1757.0 0.35 TGTGCCAGCAGCTTAGGAGGGGGAGAGGGGGCCAGTGAGCAGTTCTTC CASSLGGGEGASEQFF TRBV7-6*01 TRBJ2-1*01 22.0 1477.0 CAVRAPPWAAPIIF_CASSLGGGEGASEQFF 1 8291 EBNA3A-193-201 EBV 0.65 1022 NEG 248 8043 8 EBV EBNA3A FLRGRAYGL effector memory T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-B*08:01 B2M MHCI -5946 chip0423_134750 15.65 8.96 Chip2 T1D_6 T1D TGCATCCTCCCACTTGCTGGTGGTACTAGCCATGGAAAGCTGACATTT CILPLAGGTSHGKLTF TRAV26-2*01 TRAJ52*01 18.0 721.0 TGTGCCAGCAGCTTGGGACAGGCCTACGAGCAGTACTTC CASSLGQAYEQYF TRBV7-8*01 TRBJ2-7*01 32.0 2045.0 CILPLAGGTSHGKLTF_CASSLGQAYEQYF 2 4387 EBNA3A-193-201 EBV 0.67 1022 NEG 255 4132 12 EBV EBNA3A FLRGRAYGL effector T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-B*08:01 B2M MHCI -5947 chip0423_570636 10.65 7.57 Chip2 T1D_6 T1D TGCAGCGCCGGCAGGGACGGGACTAATGAAAAACTGTTTTTT CSAGRDGTNEKLFF TRBV29-1*01 TRBJ1-4*01 156.0 9578.0 _CSAGRDGTNEKLFF 159 5665 EBV-BLMF1 EBV 0.44 2531 NEG 252 5413 10 EBV BLMF1 GLCTLVAML effector memory T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*02:01 B2M MHCI -5948 chip0423_176101 13.06 6.67 Chip2 T1D_6 T1D TGCATCCTCCCACTTGCTGGTGGTACTAGCTATGGGAAGCTGACATTC CILPLAGGTSYGKLTF TRAV26-2*01 TRAJ52*01 24.0 1187.0 TGTGCCAGCAGCTTGGGACAGGCCTACGAGCAGTACTTC CASSLGQAYEQYF TRBV7-8*01 TRBJ2-7*01 16.0 816.0 CILPLAGGTSYGKLTF_CASSLGQAYEQYF 308 4481 EBNA3A-193-201 EBV 0.9 1022 EBNA3A-193-201 247 4234 10 EBV EBNA3A FLRGRAYGL effector memory T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-B*08:01 B2M MHCI -5949 chip0423_106104 5.54 11.74 Chip2 T1D_4 T1D _ 6746 7022 M1 FLU 0.58 1250 M1 219 6803 7 InfluenzaA M1 GILGFVFTL transitional T cells between effector and memory populations PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*02:01 B2M MHCI -5950 chip0423_806867 11.78 7.79 Chip2 T1D_5 T1D TGTGCAGCAATGGAAACCTCCTACGACAAGGTGATATTT CAAMETSYDKVIF TRAV13-1*01 TRAJ50*01 45.0 3965.0 TGTGCCAGCAGCTACTTAGACAGGGAGAACACTGAAGCTTTCTTT CASSYLDRENTEAFF TRBV7-2*01 TRBJ1-1*01 100.0 3016.0 CAAMETSYDKVIF_CASSYLDRENTEAFF 2 3681 BZLF1-190-197 EBV 1.0 2156 NEG 253 3428 10 EBV BZLF1 RAKFKQLL effector memory T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-B*08:01 B2M MHCI -5951 chip0423_204208 9.9 11.12 Chip2 T1D_4 T1D TGTGCAGCAAGCGACCGCCTTCCAGGAGGAAGCTACATACCTACATTT CAASDRLPGGSYIPTF TRAV13-1*01 TRAJ6*01 14.0 349.0 TGCAGTGCTACTAACCAGTACGACGGACCCGACACTGAAGCTTTCTTT CSATNQYDGPDTEAFF TRBV20-1*01 TRBJ1-1*01 13.0 376.0 CAASDRLPGGSYIPTF_CSATNQYDGPDTEAFF 21 4589 BZLF1-190-197 EBV 0.5 2156 NEG 254 4335 9 EBV BZLF1 RAKFKQLL effector memory T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-B*08:01 B2M MHCI -5952 chip0423_435458 10.12 7.12 Chip2 T1D_4 T1D TGCATCGTCAGAGAGGGAGGAGGTGCTGACGGACTCACCTTT CIVREGGGADGLTF TRAV26-1*01 TRAJ45*01 1.0 63.0 CIVREGGGADGLTF_ 9 4950 BZLF1-190-197 EBV 0.97 2156 BZLF1-190-197 244 4706 10 EBV BZLF1 RAKFKQLL effector memory T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-B*08:01 B2M MHCI -5953 chip0423_761419 12.59 6.42 Chip2 T1D_6 T1D TGCATCCTCCCACTTGCTGGTGGTACTAGCTATGGAAAGCTGACATTT CILPLAGGTSYGKLTF TRAV26-2*01 TRAJ52*01 55.0 2597.0 TGTGCCAGCAGCTTGGGACAGGCCTACGAGCAGTACTTC CASSLGQAYEQYF TRBV7-8*01 TRBJ2-7*01 13.0 698.0 CILPLAGGTSYGKLTF_CASSLGQAYEQYF 308 5206 EBNA3A-193-201 EBV 0.43 1022 NEG 256 4950 10 EBV EBNA3A FLRGRAYGL effector memory T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-B*08:01 B2M MHCI -5954 chip0423_481382 8.53 10.64 Chip2 T1D_4 T1D TGCAGTGCTACTAACCAGTACGACGGACCCGACACTGAAGCTTTCTTT CSATNQYDGPDTEAFF TRBV20-1*01 TRBJ1-1*01 15.0 281.0 _CSATNQYDGPDTEAFF 5 5914 BZLF1-190-197 EBV 0.78 2156 NEG 224 5690 8 EBV BZLF1 RAKFKQLL effector memory T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-B*08:01 B2M MHCI -5955 chip0423_194590 5.47 9.57 Chip2 T1D_4 T1D TGTGCTCTCACTACCTATGGTCAGAATTTTGTCTTT CALTTYGQNFVF TRAV38-1*01 TRAJ26*01 20.0 1794.0 TGCAGTGCCTCTCGTGCCTCCTACGAGCAGTACTTC CSASRASYEQYF TRBV20-1*01 TRBJ2-7*01 1.0 18.0 CALTTYGQNFVF_CSASRASYEQYF 1 7503 EBV-LMP1-1 EBV 0.75 237 NEG 214 7289 6 EBV LMP1 YLLEMLWRL central memory T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*02:01 B2M MHCI -5956 chip0423_445228 9.28 8.24 Chip2 T1D_5 T1D TGTGCAGCATCGGAAACCTCCTACGACAAGGTGATATTT CAASETSYDKVIF TRAV13-1*01 TRAJ50*01 47.0 3455.0 CAASETSYDKVIF_ 51 8196 BZLF1-190-197 EBV 0.75 2156 BZLF1-190-197 216 7980 8 EBV BZLF1 RAKFKQLL effector memory T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-B*08:01 B2M MHCI -5957 chip0423_622008 9.97 9.55 Chip2 T1D_4 T1D _ 6746 6742 EBV-LMP2A EBV 0.62 700 NEG 243 6499 9 EBV LMP2A CLGGLLTMV effector memory T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*02:01 B2M MHCI -5958 chip0423_736604 12.86 11.09 Chip2 T1D_5 T1D TGTGCAGCAAGTGAAACCTCCTACGACAAGGTGATATTT CAASETSYDKVIF TRAV13-1*01 TRAJ50*01 30.0 1743.0 TGTGCCAGCAGCTTTTTGGGACAGATGAACACTGAAGCTTTCTTT CASSFLGQMNTEAFF TRBV7-9*01 TRBJ1-1*01 174.0 5625.0 CAASETSYDKVIF_CASSFLGQMNTEAFF 2 3106 BZLF1-190-197 EBV 0.45 2156 NEG 227 2879 9 EBV BZLF1 RAKFKQLL effector memory T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-B*08:01 B2M MHCI -5959 chip0423_327390 -0.02 7.19 Chip2 T1D_6 T1D TGTGCCAGCAGCCTCTATAAGTCTAGTGGGGAGCTGTTTTTT CASSLYKSSGELFF TRBV14*01 TRBJ2-2*01 19.0 671.0 _CASSLYKSSGELFF 1 10938 GAD2-TLK-8 GAD65 0.57 11 GAD2-TLK-8 228 10710 3 HomoSapiens GAD2 TLKKMREI Naive T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-B*08:01 B2M MHCI -5960 chip0423_109559 -2.33 7.74 Chip2 T1D_5 T1D TGTGCTCTGAGTGAGGCGGGTGGCCAGAAGCTGCTCTTT CALSEAGGQKLLF TRAV19*01 TRAJ16*01 9.0 897.0 TGTGCCAGCAGTATGACGGAACAGGTTCTCAACACCTTC CASSMTEQVLNTF TRBV12-3*01,TRBV12-4*01 TRBJ1-2*01 49.0 2928.0 CALSEAGGQKLLF_CASSMTEQVLNTF 1 7024 ZNT8-VTD-9 ZNT8 0.5 65 ZNT8-VTD-9 212 6812 3 HomoSapiens ZNT8 VTDAAHLLI Naive T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*01:01 B2M MHCI -5961 chip0423_218887 5.77 8.86 Chip2 T1D_4 T1D TGTGCTGTCCCAGGAGGAAGCCAAGGAAATCTCATCTTT CAVPGGSQGNLIF TRAV8-3*01 TRAJ42*01 16.0 854.0 TGTGCCAGCAGTTACTCAAGTACAGGGGAGTACTTC CASSYSSTGEYF TRBV6-2*01,TRBV6-3*01 TRBJ2-7*01 7.0 247.0 CAVPGGSQGNLIF_CASSYSSTGEYF 20 6897 EBV-LMP1-1 EBV 0.57 237 NEG 214 6683 6 EBV LMP1 YLLEMLWRL central memory T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*02:01 B2M MHCI -5962 chip0423_752637 10.77 6.7 Chip2 T1D_4 T1D TGTGCCAGCAGCTTAGCGGTCGGAGAAGGGCCCCAGCATTTT CASSLAVGEGPQHF TRBV7-9*01 TRBJ1-5*01 101.0 3934.0 _CASSLAVGEGPQHF 113 4693 BZLF1-190-197 EBV 0.93 2156 BZLF1-190-197 225 4468 10 EBV BZLF1 RAKFKQLL effector memory T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-B*08:01 B2M MHCI -5963 chip0423_150427 13.84 9.56 Chip2 T1D_6 T1D TGTGCAGCAAGCAAGATAGAGGAGGAGGTGCTGACGGACTCACCTTT CAASKIEga?GGADGLTF TRAV23/DV6*01 TRAJ45*01 1.0 46.0 TGTGCCAGCAGCTTGGGACAGGCCTACGAGCAGTACTTC CASSLGQAYEQYF TRBV7-8*01 TRBJ2-7*01 16.0 1025.0 CAASKIEga?GGADGLTF_CASSLGQAYEQYF 8 4311 EBNA3A-193-201 EBV 0.53 1022 NEG 228 4083 12 EBV EBNA3A FLRGRAYGL effector T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-B*08:01 B2M MHCI -5964 chip0423_595583 8.63 10.43 Chip2 T1D_4 T1D TGTGCCAGCAGCCAAGTCAACAACCCGGGGGATGGCTACACCTTC CASSQVNNPGDGYTF TRBV14*01 TRBJ1-2*01 27.0 639.0 _CASSQVNNPGDGYTF 94 6988 EBNA3A-158-166 EBV 0.92 444 NEG 227 6761 8 EBV EBNA3A QAKWRLQTL effector memory T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-B*08:01 B2M MHCI -5965 chip0423_711247 9.8 6.9 Chip2 T1D_5 T1D TGTGCAGCAAGTGAAACCTCCTACGACAAGGTGATATTT CAASETSYDKVIF TRAV13-1*01 TRAJ50*01 6.0 409.0 TGTGCCAGCAGCCCCCTGGGCAGCGAAAATTCACCCCTCCACTTT CASSPLGSENSPLHF TRBV7-9*01 TRBJ1-6*01 31.0 846.0 CAASETSYDKVIF_CASSPLGSENSPLHF 1 6505 BZLF1-190-197 EBV 0.5 2156 NEG 266 6239 10 EBV BZLF1 RAKFKQLL effector memory T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-B*08:01 B2M MHCI -5966 chip0423_429197 12.87 6.35 Chip2 T1D_4 T1D TGCATCCTGCCTCTTGCTGGTGGTACTAGCTATGGAAAGCTGACATTT CILPLAGGTSYGKLTF TRAV26-2*01 TRAJ52*01 17.0 347.0 TGTGCCAGCAGCTTAGGGCAAGCCTACGAGCAGTACTTC CASSLGQAYEQYF TRBV7-8*01 TRBJ2-7*01 28.0 1619.0 CILPLAGGTSYGKLTF_CASSLGQAYEQYF 308 3869 EBNA3A-193-201 EBV 0.93 1022 NEG 267 3602 10 EBV EBNA3A FLRGRAYGL effector memory T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-B*08:01 B2M MHCI -5967 chip0423_650039 4.98 9.88 Chip2 healthy_3 healthy TGTGCCGTGCGGGATGACATGCGCTTT CAVRDDMRF TRAV12-2*01 TRAJ43*01 4.0 565.0 TGTGCCAGCAGCCCGAGACTCTTGTCGGGAACCGGGGAGCTGTTTTTT CASSPRLLSGTGELFF TRBV7-9*01 TRBJ2-2*01 105.0 4525.0 CAVRDDMRF_CASSPRLLSGTGELFF 1 6023 PGT-178 PGT 0.8 1480 NEG 210 5813 6 HomoSapiens PGT LLAGIGTVPI central memory T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*02:01 B2M MHCI -5968 chip0423_52574 9.14 8.16 Chip2 T1D_6 T1D TGTGCCAGCAGCTTGGGACAGGCCTACGAGCAGTACTTC CASSLGQAYEQYF TRBV7-8*01 TRBJ2-7*01 35.0 1963.0 _CASSLGQAYEQYF 175 6676 EBNA3A-193-201 EBV 0.76 1022 EBNA3A-193-201 259 6417 8 EBV EBNA3A FLRGRAYGL effector memory T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-B*08:01 B2M MHCI -5969 chip0423_31551 12.94 7.33 Chip2 T1D_4 T1D TGTGCCAGCAGCTTAGCGGTCGGAGAAGGGCCCCAGCATTTT CASSLAVGEGPQHF TRBV7-9*01 TRBJ1-5*01 6.0 179.0 _CASSLAVGEGPQHF 113 3494 BZLF1-190-197 EBV 0.76 2156 BZLF1-190-197 240 3254 10 EBV BZLF1 RAKFKQLL effector memory T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-B*08:01 B2M MHCI -5970 chip0423_591082 8.5 11.41 Chip2 T1D_4 T1D TGCGCCAGCAGCTTGGAGCTGGGGCTTCCCTACGAGCAGTACTTC CASSLELGLPYEQYF TRBV5-1*01 TRBJ2-7*01 17.0 943.0 _CASSLELGLPYEQYF 8 7697 EBNA3A-158-166 EBV 0.67 444 EBNA3A-158-166 227 7470 7 EBV EBNA3A QAKWRLQTL transitional T cells between effector and memory populations PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-B*08:01 B2M MHCI -5971 chip0423_315877 6.66 13.65 Chip2 T1D_6 T1D TGTGCTCTGAGCAGCGCCCTTGGGGGGCTGGGTGTTTCCCACTCACTGTC CALSSALGg?gAGCFPLTV TRAV9-2*01 TRAJ28*01 26.0 1060.0 TGTGCCAGTAGTATTAGATCCGCCTACGAGCAGTACTTC CASSIRSAYEQYF TRBV19*01 TRBJ2-7*01 11.0 467.0 CALSSALGg?gAGCFPLTV_CASSIRSAYEQYF 1 3944 M1 FLU 0.5 1250 NEG 226 3718 7 InfluenzaA M1 GILGFVFTL transitional T cells between effector and memory populations PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*02:01 B2M MHCI -5972 chip0423_246778 -2.85 10.63 Chip2 healthy_4 healthy TGTGCCAGCAGCTTATTAGGTCGCTCGCACACTGCAGCTTTCTTT CASSLLGRSHTAAFF TRBV7-9*01 TRBJ1-1*01 2.0 82.0 _CASSLLGRSHTAAFF 1 4880 PGT-178 PGT 0.56 1480 NEG 190 4690 3 HomoSapiens PGT LLAGIGTVPI Naive T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*02:01 B2M MHCI -5973 chip0423_766057 9.36 10.3 Chip2 T1D_6 T1D TGCAGCGCCGGCAGGGACGGGACTAATGAAAAACTGTTTTTT CSAGRDGTNEKLFF TRBV29-1*01 TRBJ1-4*01 151.0 8360.0 _CSAGRDGTNEKLFF 159 6303 EBV-BLMF1 EBV 0.6 2531 NEG 213 6090 9 EBV BLMF1 GLCTLVAML effector memory T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*02:01 B2M MHCI -5974 chip0423_498964 13.74 9.07 Chip2 T1D_5 T1D TGCGCCAGCAGCCTCAGTTCGGGGGGCCGTGGCGAGCAGTACTTC CASSLSSGGRGEQYF TRBV4-1*01 TRBJ2-7*01 9.0 527.0 _CASSLSSGGRGEQYF 11 4454 BZLF1-190-197 EBV 0.77 2156 NEG 234 4220 12 EBV BZLF1 RAKFKQLL effector T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-B*08:01 B2M MHCI -5975 chip0423_714402 12.52 10.47 Chip2 T1D_6 T1D TGCATCCTCCCACTTGCTGGTGGTACTAGCTATGGAAAGCTGACATTT CILPLAGGTSYGKLTF TRAV26-2*01 TRAJ52*01 108.0 2917.0 TGTGCCAGCAGCCTGGGACAGGCCTACGAGCAGTACTTC CASSLGQAYEQYF TRBV7-8*01 TRBJ2-7*01 17.0 945.0 CILPLAGGTSYGKLTF_CASSLGQAYEQYF 308 5096 EBNA3A-193-201 EBV 0.64 1022 NEG 242 4854 9 EBV EBNA3A FLRGRAYGL effector memory T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-B*08:01 B2M MHCI -5976 chip0423_679250 10.2 6.7 Chip2 T1D_6 T1D TGCATCCTCCCACTTGCTGGTGGTACTAGCTATGGAAAGCTGACATTT CILPLAGGTSYGKLTF TRAV26-2*01 TRAJ52*01 33.0 1627.0 TGTGCCAGCAGCTTGGGACAGGCCTACGAGCAGTACTTC CASSLGQAYEQYF TRBV7-8*01 TRBJ2-7*01 19.0 767.0 CILPLAGGTSYGKLTF_CASSLGQAYEQYF 308 9788 EBNA3A-193-201 EBV 0.73 1022 EBNA3A-193-201 287 9501 10 EBV EBNA3A FLRGRAYGL effector memory T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-B*08:01 B2M MHCI -5977 chip0423_718966 6.16 9.69 Chip2 T1D_6 T1D TGCGCCAGCAGTGACATTAGGGAGGGGCAGGGTGAAGCTTTCTTT CASSDIREGQGEAFF TRBV10-2*01 TRBJ1-1*01 39.0 1731.0 _CASSDIREGQGEAFF 37 10843 EBNA3A-158-166 EBV 0.79 444 EBNA3A-158-166 226 10617 6 EBV EBNA3A QAKWRLQTL central memory T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-B*08:01 B2M MHCI -5978 chip0423_418171 13.67 7.55 Chip2 T1D_5 T1D TGTGCTCTGAGACCATCTTTGGCAATGCGCTATTACCCTTT CALRPStt?GNALLPF TRAV19*01 TRAJ48*01 38.0 1969.0 TGTGCCAGCAGCTCGTTGGGACAGAGAGAGACCCAGTACTTC CASSSLGQRETQYF TRBV7-9*01 TRBJ2-5*01 45.0 2025.0 CALRPStt?GNALLPF_CASSSLGQRETQYF 1 3466 BZLF1-190-197 EBV 0.5 2156 NEG 277 3189 10 EBV BZLF1 RAKFKQLL effector memory T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-B*08:01 B2M MHCI -5979 chip0423_357804 5.67 9.64 Chip2 T1D_6 T1D TGTGCCGTGACGGTAGGCTTT CAVTVGF TRAV12-2*01 TRAJ37*01 6.0 69.0 TGTGCCAGCAGCGCAACATCCCTCCCCCTTAATGAGCAGTTCTTC CASSATSLPLNEQFF TRBV9*01 TRBJ2-1*01 42.0 2178.0 CAVTVGF_CASSATSLPLNEQFF 1 7022 MART1-ALA MART1 0.5 269 NEG 236 6786 6 HomoSapiens MART1 ALAGIGILTV central memory T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*02:01 B2M MHCI -5980 chip0423_159942 8.64 10.35 Chip2 T1D_4 T1D TGCAGTGCTACTGATACTCTTCAGTATGGCTACACCTTC CSATDTLQYGYTF TRBV20-1*01 TRBJ1-2*01 24.0 1454.0 _CSATDTLQYGYTF 2 4047 EBV-BRLF1 EBV 0.83 1264 NEG 223 3824 8 EBV BRLF1 YVLDHLIVV effector memory T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*02:01 B2M MHCI -5981 chip0423_832650 7.56 12.54 Chip2 T1D_6 T1D TGTGCCTCCCAAGGAGGAAGCCAAGGAAATCTCATCTTT CASQGGSQGNLIF TRAV20*01 TRAJ42*01 61.0 3869.0 TGTGCCACAGAGATAAACTTGTAACCAGGGAGGAAAGCTTATCTTC CATEINLta??acQGGKLIF TRAV30*01,TRAV25*01 TRAJ23*01 42.0 1325.0 0.29 TGTGCCAGCAGCTTAGGAGGACAGACAGAGACCCAGTACTTC CASSLGGQTETQYF TRBV13*01 TRBJ2-5*01 8.0 371.0 CASQGGSQGNLIF_CASSLGGQTETQYF 13 4073 ROTA-VP6 ROTA 0.62 47 NEG 236 3837 7 RotavirusA VP6 TLLANVTAV transitional T cells between effector and memory populations PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*02:01 B2M MHCI -5982 chip0423_301622 9.9 6.96 Chip2 T1D_4 T1D TGTGCTGTCAATTCAGGAAACACACCTCTTGTCTTT CAVNSGNTPLVF TRAV1-2*01 TRAJ29*01 23.0 1783.0 TGTGCCAGCAGCCAAGTCAACAACCCGGGGGATGGCTACACCTTC CASSQVNNPGDGYTF TRBV14*01 TRBJ1-2*01 29.0 773.0 CAVNSGNTPLVF_CASSQVNNPGDGYTF 31 8308 EBNA3A-158-166 EBV 0.71 444 NEG 252 8056 10 EBV EBNA3A QAKWRLQTL effector memory T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-B*08:01 B2M MHCI -5983 chip0423_752455 11.33 6.66 Chip2 T1D_4 T1D TGTGCTCTAAGTGAAGGAGGCTAACTTTGGAAATGAGAAATTAACCTTT CALSEGG*??cFGNEKLTF TRAV16*01 TRAJ48*01 1.0 16.0 TGTGCCAGCAGCAGAATCCCGGGCCAGGGGGCCCGACCGGATCCGAACACCGGGGAGCTGTTTTTT CASSRIPGQGARPDPNTGELFF TRBV28*01 TRBJ2-2*01 2.0 18.0 CALSEGG*??cFGNEKLTF_CASSRIPGQGARPDPNTGELFF 1 7126 EBNA3A-158-166 EBV 0.47 444 NEG 278 6848 10 EBV EBNA3A QAKWRLQTL effector memory T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-B*08:01 B2M MHCI -5984 chip0423_648130 11.47 10.52 Chip2 T1D_5 T1D TGTGCAATGAGGGCCATTGAGGGGGCAAACAACCTCTTCTTT CAMRAIEGANNLFF TRAV14/DV4*01 TRAJ36*01 34.0 1668.0 TGCGCCAGCAGCCTCAGTTCGGGGGGCCGTGGCGAGCAGTACTTC CASSLSSGGRGEQYF TRBV4-1*01 TRBJ2-7*01 1.0 77.0 CAMRAIEGANNLFF_CASSLSSGGRGEQYF 4 3491 BZLF1-190-197 EBV 0.71 2156 NEG 242 3249 9 EBV BZLF1 RAKFKQLL effector memory T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-B*08:01 B2M MHCI -5985 chip0423_705946 14.84 8.66 Chip2 T1D_4 T1D TGCATCGTCAGAGAGGGGGGTGGTGCTGACGGACTCACCTTT CIVREGGGADGLTF TRAV26-1*01 TRAJ45*01 30.0 1880.0 TGTGCCAGCAGCTTAGCGGTCGGAGAAGGGCCCCAGCATTTT CASSLAVGEGPQHF TRBV7-9*01 TRBJ1-5*01 87.0 3287.0 CIVREGGGADGLTF_CASSLAVGEGPQHF 68 3809 BZLF1-190-197 EBV 0.97 2156 BZLF1-190-197 217 3592 12 EBV BZLF1 RAKFKQLL effector T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-B*08:01 B2M MHCI -5986 chip0423_539878 14.53 8.01 Chip2 T1D_4 T1D TGTGCCAGCAGCTTAGCGGTCGGAGAAGGGCCCCAGCATTTT CASSLAVGEGPQHF TRBV7-9*01 TRBJ1-5*01 19.0 845.0 _CASSLAVGEGPQHF 113 3725 BZLF1-190-197 EBV 0.86 2156 NEG 259 3466 10 EBV BZLF1 RAKFKQLL effector memory T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-B*08:01 B2M MHCI -5987 chip0423_46248 10.34 7.17 Chip2 T1D_4 T1D TGTGCCAGCAGTTTGAACCCCGTTCTTCGGTTAGATACGCAGTATTTT CASSLNPVLRLDTQYF TRBV28*01 TRBJ2-3*01 50.0 2427.0 _CASSLNPVLRLDTQYF 6 5849 EBNA3A-158-166 EBV 1.0 444 NEG 229 5620 10 EBV EBNA3A QAKWRLQTL effector memory T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-B*08:01 B2M MHCI -5988 chip0423_701047 14.77 8.66 Chip2 T1D_6 T1D TGCAGCGCCGGCAGGGACGGGACTAATGAAAAACTGTTTTTT CSAGRDGTNEKLFF TRBV29-1*01 TRBJ1-4*01 111.0 6745.0 _CSAGRDGTNEKLFF 159 2905 EBV-BLMF1 EBV 0.56 2531 NEG 267 2638 12 EBV BLMF1 GLCTLVAML effector T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*02:01 B2M MHCI -5989 chip0423_358785 9.0 9.07 Chip2 T1D_4 T1D TGTGCCAGCAGCAGAATCCCGGGACAGGGGGCCCGACCGGATCCGAACACCGGGGAGCTGTTTTTT CASSRIPGQGARPDPNTGELFF TRBV28*01 TRBJ2-2*01 3.0 64.0 _CASSRIPGQGARPDPNTGELFF 6 5298 EBV-LMP2A EBV 0.67 700 EBV-LMP2A 221 5077 8 EBV LMP2A CLGGLLTMV effector memory T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*02:01 B2M MHCI -5990 chip0423_473360 11.86 10.23 Chip2 T1D_4 T1D TGCATCGTCAGAGAGGGAGGAGGTGCTGACGGACTCACCTTT CIVREGGGADGLTF TRAV26-1*01 TRAJ45*01 1.0 14.0 TGTGCCAGCAGCTTAGCGGTCGGAGAAGGGCCCCAGCATTTT CASSLAVGEGPQHF TRBV7-9*01 TRBJ1-5*01 25.0 975.0 CIVREGGGADGLTF_CASSLAVGEGPQHF 68 2938 BZLF1-190-197 EBV 0.91 2156 BZLF1-190-197 249 2689 9 EBV BZLF1 RAKFKQLL effector memory T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-B*08:01 B2M MHCI -5991 chip0423_818844 14.18 10.42 Chip2 T1D_6 T1D TGCATCCTCCCACTTGCTGGTGGTACTAGCTATGGAAAGCTGACATTT CILPLAGGTSYGKLTF TRAV26-2*01 TRAJ52*01 45.0 1445.0 TGTGCCAGCAGCTTGGGACAGGCCTACGAGCAGTACTTC CASSLGQAYEQYF TRBV7-8*01 TRBJ2-7*01 33.0 1662.0 CILPLAGGTSYGKLTF_CASSLGQAYEQYF 308 5849 EBNA3A-193-201 EBV 0.83 1022 NEG 235 5614 12 EBV EBNA3A FLRGRAYGL effector T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-B*08:01 B2M MHCI -5992 chip0423_189263 -1.98 11.12 Chip2 T1D_6 T1D _ 6746 5505 G6PC2-FLH-8 IGRP 0.84 3 G6PC2-FLH-8 229 5276 3 HomoSapiens G6PC2 FLHRNGVL Naive T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-B*08:01 B2M MHCI -5993 chip0423_202987 11.82 7.15 Chip2 T1D_5 T1D TGTGCAGCAACGGAGACCTCCTACGACAAGGTGATATTT CAATETSYDKVIF TRAV13-1*01 TRAJ50*01 41.0 3210.0 TGTGCCAGCTCACCACCAGGAGGGGGGAACACCGGGGAGCTGTTTTTT CASSPPGGGNTGELFF TRBV18*01 TRBJ2-2*01 21.0 901.0 CAATETSYDKVIF_CASSPPGGGNTGELFF 1 4215 BZLF1-190-197 EBV 1.0 2156 NEG 245 3970 10 EBV BZLF1 RAKFKQLL effector memory T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-B*08:01 B2M MHCI -5994 chip0423_674183 -2.73 7.68 Chip2 T1D_6 T1D TGTGCCAGCAGCGCACAGGGTTCTAACTATGGCTACACCTTC CASSAQGSNYGYTF TRBV9*01 TRBJ1-2*01 4.0 197.0 _CASSAQGSNYGYTF 1 8051 GAD2-QQD-10 GAD65 0.76 7 GAD2-QQD-10 213 7838 3 HomoSapiens GAD2 QQDKHYDLSY Naive T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*01:01 B2M MHCI -5995 chip0423_406464 11.92 6.82 Chip2 T1D_4 T1D TGTGCCGTGAATGCTTTTTCTGGTGGCTACAATAAGCTGATTTTT CAVNAFSGGYNKLIF TRAV8-1*01 TRAJ4*01 23.0 961.0 TGTGCCAGCAGCCAGGAGGACTCCCGTTGGGAGCAGTTCTTC CASSQEDSRWEQFF TRBV14*01 TRBJ2-1*01 10.0 716.0 CAVNAFSGGYNKLIF_CASSQEDSRWEQFF 3 6229 EBV-LMP1-1 EBV 0.71 237 NEG 232 5997 10 EBV LMP1 YLLEMLWRL effector memory T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*02:01 B2M MHCI -5996 chip0423_606071 13.22 7.83 Chip2 T1D_5 T1D TGTGCCAGCAGTCCCGACGGATCCACCGGGGAGCTGTTTTTT CASSPDGSTGELFF TRBV12-3*01,TRBV12-4*01 TRBJ2-2*01 103.0 5544.0 _CASSPDGSTGELFF 10 2721 BZLF1-190-197 EBV 0.67 2156 NEG 251 2470 10 EBV BZLF1 RAKFKQLL effector memory T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-B*08:01 B2M MHCI -5997 chip0423_379278 5.39 9.19 Chip2 T1D_4 T1D _ 6746 5472 EBV-LMP1-1 EBV 0.75 237 NEG 204 5268 6 EBV LMP1 YLLEMLWRL central memory T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*02:01 B2M MHCI -5998 chip0423_31921 9.89 7.0 Chip2 T1D_4 T1D TGTGCTGTGAGAGACACGACGTGGGATGACAAGATCATCTTT CAVRDTTWDDKIIF TRAV3*01 TRAJ30*01 29.0 1255.0 TGTGCCAGCAGCTTAGGAGGGGGAGAGGGGGCCAGTGAGCAGTTCTTC CASSLGGGEGASEQFF TRBV7-6*01 TRBJ2-1*01 9.0 532.0 CAVRDTTWDDKIIF_CASSLGGGEGASEQFF 12 7093 EBNA3A-193-201 EBV 0.73 1022 NEG 231 6862 10 EBV EBNA3A FLRGRAYGL effector memory T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-B*08:01 B2M MHCI -5999 chip0423_590571 10.93 6.78 Chip2 T1D_4 T1D TGTGCTGTGTGTGCTGGAGTAGGGGCCCTGAAGCTGGTATTT CAVCAGVGALKLVF TRAV8-6*01 TRAJ54*01 19.0 716.0 CAVCAGVGALKLVF_ 1 5530 BZLF1-190-197 EBV 0.73 2156 NEG 271 5259 10 EBV BZLF1 RAKFKQLL effector memory T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-B*08:01 B2M MHCI -6000 chip0423_76155 11.27 6.46 Chip2 T1D_4 T1D TGTGCTCTCACTACCTATGGTCAGAATTTTGTCTTT CALTTYGQNFVF TRAV38-1*01 TRAJ26*01 27.0 2715.0 TGCAGTGCCTCTCGTGTCTCCTACGAGCAGTACTTC CSASRVSYEQYF TRBV20-1*01 TRBJ2-7*01 21.0 1322.0 CALTTYGQNFVF_CSASRVSYEQYF 2 6952 EBV-LMP1-1 EBV 0.91 237 EBV-LMP1-1 251 6701 6 EBV LMP1 YLLEMLWRL central memory T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*02:01 B2M MHCI -6001 chip0423_261427 11.43 6.14 Chip2 T1D_5 T1D TGTGCCAGCATCGTTCTGGGGGACCCCTACAATGAGCAGTTCTTC CASIVLGDPYNEQFF TRBV7-9*01 TRBJ2-1*01 39.0 2731.0 _CASIVLGDPYNEQFF 2 8623 BZLF1-190-197 EBV 0.8 2156 NEG 257 8366 10 EBV BZLF1 RAKFKQLL effector memory T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-B*08:01 B2M MHCI -6002 chip0423_180949 14.11 11.08 Chip2 T1D_5 T1D TGTGCCAGCAGCTTACTAGGCGGGGGCGAGAGCTCTGGAAACACCATATATTTT CASSLLGGGESSGNTIYF TRBV11-1*01 TRBJ1-3*01 22.0 712.0 _CASSLLGGGESSGNTIYF 1 4810 BZLF1-190-197 EBV 0.7 2156 BZLF1-190-197 220 4590 12 EBV BZLF1 RAKFKQLL effector T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-B*08:01 B2M MHCI -6003 chip0423_767531 12.78 6.73 Chip2 T1D_4 T1D TGTGCCAGCAGCTTAACGGCTCTGGCAGGTCCAAACACTGAAGCTTTCTTT CASSLTALAGPNTEAFF TRBV7-3*01 TRBJ1-1*01 29.0 871.0 _CASSLTALAGPNTEAFF 1 7172 BZLF1-190-197 EBV 0.76 2156 BZLF1-190-197 263 6909 10 EBV BZLF1 RAKFKQLL effector memory T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-B*08:01 B2M MHCI -6004 chip0423_327684 12.62 6.86 Chip2 T1D_5 T1D TGTGCTGTGAGAGACGACTATGGTCAGAATTTTGTCTTT CAVRDDYGQNFVF TRAV3*01 TRAJ26*01 89.0 5789.0 CAVRDDYGQNFVF_ 1 2535 BZLF1-190-197 EBV 0.82 2156 NEG 252 2283 10 EBV BZLF1 RAKFKQLL effector memory T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-B*08:01 B2M MHCI -6005 chip0423_683868 9.4 7.76 Chip2 T1D_4 T1D TGCATCGTCAGAGTCGTGTGTACGGCACTGCCAGTAAACTCACCTTT CIVRVVCac?GTASKLTF TRAV26-1*01 TRAJ44*01 21.0 612.0 TGTGCCAGCAGCTTAGCGGTCGGAGAAGGGCCCCAGCATTTT CASSLAVGEGPQHF TRBV7-9*01 TRBJ1-5*01 9.0 268.0 CIVRVVCac?GTASKLTF_CASSLAVGEGPQHF 3 4789 BZLF1-190-197 EBV 0.93 2156 BZLF1-190-197 255 4534 8 EBV BZLF1 RAKFKQLL effector memory T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-B*08:01 B2M MHCI -6006 chip0423_314804 12.67 6.33 Chip2 T1D_4 T1D TGTGCAGAGGATAGCTCTGCCCGACTCGTGTTT CAEDSSARLVF TRAV13-2*01,TRAV5*01 TRAJ31*01 2.0 9.0 TGCAGTGCTAGGGACCAAACAGGGAATGGCTACACCTTC CSARDQTGNGYTF TRBV20-1*01 TRBJ1-2*01 27.0 1853.0 CAEDSSARLVF_CSARDQTGNGYTF 1 7596 EBV-BLMF1 EBV 0.4 2531 NEG 218 7378 10 EBV BLMF1 GLCTLVAML effector memory T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*02:01 B2M MHCI -6007 chip0423_165685 11.65 8.06 Chip2 T1D_5 T1D TGTGCCAGCCTCAAGCCGGATAGCACCGGGGAGCTGTTTTTT CASLKPDSTGELFF TRBV2*01 TRBJ2-2*01 72.0 4141.0 _CASLKPDSTGELFF 2 3065 BZLF1-190-197 EBV 0.56 2156 NEG 209 2856 10 EBV BZLF1 RAKFKQLL effector memory T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-B*08:01 B2M MHCI -6008 chip0423_755619 5.08 11.55 Chip2 T1D_4 T1D TGTGCCATCAGTGAGATCGGGGGGCTATACGAAAAACAGTTTTTG CAISEIGGLYEKQFL TRBV10-3*01 TRBJ1-4*01 5.0 126.0 _CAISEIGGLYEKQFL 1 6202 EBV-BRLF1 EBV 0.45 1264 NEG 222 5980 6 EBV BRLF1 YVLDHLIVV central memory T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*02:01 B2M MHCI -6009 chip0423_52639 13.73 8.24 Chip2 T1D_6 T1D TGTGCCAGCAGCTTGGGACAGGCCTACGAGCAGTACTTC CASSLGQAYEQYF TRBV7-8*01 TRBJ2-7*01 16.0 1182.0 _CASSLGQAYEQYF 175 2972 EBNA3A-193-201 EBV 0.67 1022 NEG 253 2719 10 EBV EBNA3A FLRGRAYGL effector memory T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-B*08:01 B2M MHCI -6010 chip0423_723214 8.49 8.75 Chip2 T1D_5 T1D TGTGCAGCGGCGGAAACCTCCTACGACAAGGTGATATTT CAAAETSYDKVIF TRAV13-1*01 TRAJ50*01 46.0 3121.0 TGTGCCAGCCAACTAGCGGGAGGCACCGGGGAGCTGTTTTTT CASQLAGGTGELFF TRBV24-1*01 TRBJ2-2*01 17.0 740.0 CAAAETSYDKVIF_CASQLAGGTGELFF 131 7375 BZLF1-190-197 EBV 0.71 2156 BZLF1-190-197 241 7134 8 EBV BZLF1 RAKFKQLL effector memory T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-B*08:01 B2M MHCI -6011 chip0423_121844 13.33 6.81 Chip2 T1D_4 T1D TGTGCTGTGAGTGATGGAGAAGGAGCCCAGAAGCTGGTATTT CAVSDGEGAQKLVF TRAV8-6*01 TRAJ54*01 43.0 2121.0 TGTGCCAGCAGCTTAACGGTTCTGGCAGGTCCAAACACTGAAGCTTTCTTT CASSLTVLAGPNTEAFF TRBV7-3*01 TRBJ1-1*01 76.0 2764.0 CAVSDGEGAQKLVF_CASSLTVLAGPNTEAFF 44 7093 BZLF1-190-197 EBV 0.9 2156 BZLF1-190-197 248 6845 10 EBV BZLF1 RAKFKQLL effector memory T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-B*08:01 B2M MHCI -6012 chip0423_602467 11.85 12.04 Chip2 T1D_4 T1D TGCATCGTCAGAGAGGGAGGAGGTGCTGACGGACTCCCCTTT CIVREGGGADGLPF TRAV26-1*01 TRAJ45*01 33.0 1797.0 TGTGCCAGCAGCTTAGCGGTCGGAGAAGGGCCCCAGCATTTT CASSLAVGEGPQHF TRBV7-9*01 TRBJ1-5*01 15.0 657.0 CIVREGGGADGLPF_CASSLAVGEGPQHF 21 3595 BZLF1-190-197 EBV 0.76 2156 BZLF1-190-197 256 3339 11 EBV BZLF1 RAKFKQLL effector T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-B*08:01 B2M MHCI -6013 chip0423_591424 11.78 7.5 Chip2 T1D_4 T1D TGCATCCTCCCGTTGGCTGGTGGTACTAGCTATGGAAAGCTGACATTT CILPLAGGTSYGKLTF TRAV26-2*01 TRAJ52*01 32.0 1578.0 TGTGCCAGCAGCCAAGGACAGGCCTACGAGCAGTACTTC CASSQGQAYEQYF TRBV7-8*01 TRBJ2-7*01 61.0 3990.0 CILPLAGGTSYGKLTF_CASSQGQAYEQYF 3 4132 EBNA3A-193-201 EBV 0.89 1022 EBNA3A-193-201 268 3864 10 EBV EBNA3A FLRGRAYGL effector memory T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-B*08:01 B2M MHCI -6014 chip0423_302472 13.59 8.89 Chip2 T1D_4 T1D TGCATCGTCAGAGAGGGAGGAGGTGCTGACGGACTCACCTTT CIVREGGGADGLTF TRAV26-1*01 TRAJ45*01 97.0 5667.0 TGTGCCAGCAGCTTAGCGGTCGGAGAAGGGCCCCAGCATTTT CASSLAVGEGPQHF TRBV7-9*01 TRBJ1-5*01 67.0 2878.0 CIVREGGGADGLTF_CASSLAVGEGPQHF 68 4366 BZLF1-190-197 EBV 0.91 2156 BZLF1-190-197 242 4124 12 EBV BZLF1 RAKFKQLL effector T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-B*08:01 B2M MHCI -6015 chip0423_127215 13.26 10.94 Chip2 T1D_5 T1D TGCATCCTGACAGAAACCTCCTACGACAAGGTGATATTT CILTETSYDKVIF TRAV26-2*01 TRAJ50*01 27.0 2209.0 TGTGCCAGCAGCCCCCTTGGTGTGAGGACTGAAGCTTTCTTT CASSPLGVRTEAFF TRBV7-9*01 TRBJ1-1*01 63.0 3598.0 CILTETSYDKVIF_CASSPLGVRTEAFF 1 3821 BZLF1-190-197 EBV 0.67 2156 NEG 232 3589 9 EBV BZLF1 RAKFKQLL effector memory T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-B*08:01 B2M MHCI -6016 chip0423_867259 -4.41 8.78 Chip2 T1D_6 T1D TGTGCTCTGAGTGAGCTTTATAACCAGGGAGGAAAGCTTATCTTC CALSELYNQGGKLIF TRAV19*01 TRAJ23*01 25.0 774.0 TGTGCCAGCAGCGTAGAAGGAAACATTCAGTACTTC CASSVEGNIQYF TRBV9*01 TRBJ2-4*01 24.0 1572.0 CALSELYNQGGKLIF_CASSVEGNIQYF 1 4682 M1-ALA FLU 0.58 10 NEG 183 4499 2 InfluenzaA M1 ALASCMGLIY Naive T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*01:01 B2M MHCI -6017 chip0423_784610 10.79 7.5 Chip2 T1D_6 T1D TGTGCTGTGCGAATTCTTCCTAACTTTGGAAATGAGAAATTAACCTTT CAVRILPNFGNEKLTF TRAV21*01 TRAJ48*01 43.0 1324.0 TGTGCCAGCACTTCGTCAGAATCCGTCGATGGCTACACCTCC CASTSSESVDGYTS TRBV5-4*01 TRBJ1-2*01 3.0 140.0 CAVRILPNFGNEKLTF_CASTSSESVDGYTS 1 7616 EBNA3A-158-166 EBV 0.62 444 NEG 255 7361 10 EBV EBNA3A QAKWRLQTL effector memory T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-B*08:01 B2M MHCI -6018 chip0423_442608 12.5 10.34 Chip2 T1D_6 T1D TGCATCCTCCCACTTGCTGGTGGTACTAGCTATGGAAAGCTGACATTT CILPLAGGTSYGKLTF TRAV26-2*01 TRAJ52*01 37.0 1978.0 TGTGCAGCAAGCAAGATAGAGGAGGAGGTGCTGACGGACTCACCTTT CAASKIEga?GGADGLTF TRAV23/DV6*01 TRAJ45*01 46.0 2031.0 0.47 TGTGCCAGCAGCTTGGGACAGGCCTACGAGCAGTACTTC CASSLGQAYEQYF TRBV7-8*01 TRBJ2-7*01 15.0 466.0 CILPLAGGTSYGKLTF_CASSLGQAYEQYF 308 5226 EBNA3A-193-201 EBV 0.5 1022 NEG 248 4978 9 EBV EBNA3A FLRGRAYGL effector memory T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-B*08:01 B2M MHCI -6019 chip0423_474872 11.37 6.94 Chip2 T1D_6 T1D TGCGCCAGCAGTGACATTAGGGAGGGGCAGGGTGAAGCTTTCTTT CASSDIREGQGEAFF TRBV10-2*01 TRBJ1-1*01 30.0 1607.0 _CASSDIREGQGEAFF 37 7959 EBNA3A-158-166 EBV 0.71 444 NEG 226 7733 10 EBV EBNA3A QAKWRLQTL effector memory T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-B*08:01 B2M MHCI -6020 chip0423_211029 6.35 9.89 Chip2 T1D_6 T1D TGTGCTGTGAAGGTTTGGAGATAGCCAGAAGCTGCTCTTT CAVKVWag??atSQKLLF TRAV8-4*01 TRAJ16*01 1.0 30.0 TGCGCCAGCAGTGACATTAGGGAGGGGCAGGGTGAAGCTTTCTTT CASSDIREGQGEAFF TRBV10-2*01 TRBJ1-1*01 5.0 131.0 CAVKVWag??atSQKLLF_CASSDIREGQGEAFF 1 9997 EBNA3A-158-166 EBV 0.86 444 NEG 214 9783 6 EBV EBNA3A QAKWRLQTL central memory T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-B*08:01 B2M MHCI -6021 chip0423_183818 14.67 10.64 Chip2 T1D_5 T1D TGTCCCTGAGGGGGGGCTTT CP*g?gGGF TRAV23/DV6*01 TRAJ43*01 5.0 16.0 CP*g?gGGF_ 1 3027 BZLF1-190-197 EBV 0.5 2156 NEG 231 2796 12 EBV BZLF1 RAKFKQLL effector T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-B*08:01 B2M MHCI -6022 chip0423_574509 10.32 7.0 Chip2 T1D_4 T1D TGTGCCAGCAGCCAAGGACAGGCCTACGAGCAGTACTTC CASSQGQAYEQYF TRBV7-8*01 TRBJ2-7*01 76.0 2720.0 _CASSQGQAYEQYF 3 5632 EBNA3A-193-201 EBV 0.81 1022 EBNA3A-193-201 249 5383 10 EBV EBNA3A FLRGRAYGL effector memory T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-B*08:01 B2M MHCI -6023 chip0423_350497 10.03 8.8 Chip2 T1D_6 T1D TGCAGCGCCGGCAGGGACGGGACTAATGAAAAACTGTTTTTT CSAGRDGTNEKLFF TRBV29-1*01 TRBJ1-4*01 121.0 4249.0 _CSAGRDGTNEKLFF 159 6293 EBV-BLMF1 EBV 0.56 2531 NEG 246 6047 8 EBV BLMF1 GLCTLVAML effector memory T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*02:01 B2M MHCI -6024 chip0423_59017 5.56 8.9 Chip2 T1D_4 T1D TGTGCCGTGGCCGAGACCTCAAATACTGGAGGCTTCAAAACTATCTTT CAVAETSNTGGFKTIF TRAV12-2*01 TRAJ9*01 2.0 36.0 TGTGCCAGCAGCCTGATGGCGGGGAGCACAGATACGCAGTATTTT CASSLMAGSTDTQYF TRBV27*01 TRBJ2-3*01 100.0 4728.0 CAVAETSNTGGFKTIF_CASSLMAGSTDTQYF 3 6642 EBV-LMP1-2 EBV 0.83 41 EBV-LMP1-2 213 6429 6 EBV LMP1 YLQQNWWTL central memory T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*02:01 B2M MHCI -6025 chip0423_370004 12.37 8.87 Chip2 T1D_4 T1D TGTGCCTATGGTCAGAATTTTGTCTTT CAYGQNFVF TRAV8-3*01 TRAJ26*01 5.0 772.0 TGTGCCAGCAGCGCAGACAGCGATTATGGCTACACCTTC CASSADSDYGYTF TRBV9*01 TRBJ1-2*01 13.0 655.0 CAYGQNFVF_CASSADSDYGYTF 8 3746 EBV-LMP1-1 EBV 1.0 237 NEG 237 3509 10 EBV LMP1 YLLEMLWRL effector memory T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*02:01 B2M MHCI -6026 chip0423_863756 5.42 11.85 Chip2 T1D_4 T1D TGTGCAATGAGAGAGGGCGCCGAAACCTCCTACGACAAGGTGATATTT CAMREGAETSYDKVIF TRAV14/DV4*01 TRAJ50*01 58.0 2598.0 TGTGCCAGTAGTCTCGGACAGGCCCTTGGGGATACGCAGTATTTT CASSLGQALGDTQYF TRBV19*01 TRBJ2-3*01 57.0 3065.0 CAMREGAETSYDKVIF_CASSLGQALGDTQYF 1 4807 CVB3-P3A CVB 0.8 77 CVB3-P3A 217 4590 6 CoxsackievirusB P3A GIIYIIYKL central memory T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*02:01 B2M MHCI -6027 chip0423_720707 -0.2 8.92 Chip2 T1D_6 T1D TGTGTGGTGAACAGTGGGGCCCCGATGGAATATGGAAACAAACTGGTCTTT CVVNSGAPMEYGNKLVF TRAV12-1*01 TRAJ47*01 81.0 2564.0 CVVNSGAPMEYGNKLVF_ 1 6063 G6PC2-LTS-10 IGRP 0.69 59 G6PC2-LTS-10 225 5838 4 HomoSapiens G6PC2 LTSLTILQLY Naive T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*01:01 B2M MHCI -6028 chip0423_692643 -2.23 8.49 Chip2 T1D_4 T1D TGTGCCAGCAGTTACCGTGAGAACACTGAAGCTTTCTTT CASSYRENTEAFF TRBV6-5*01 TRBJ1-1*01 10.0 470.0 _CASSYRENTEAFF 1 5738 MART1-ALA MART1 0.69 269 NEG 214 5524 3 HomoSapiens MART1 ALAGIGILTV Naive T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*02:01 B2M MHCI -6029 chip0423_780343 14.81 8.39 Chip2 T1D_6 T1D TGCATCCTCCCACTTGCTGGTGGTACTAGCTATGGAAAGCTGACATTT CILPLAGGTSYGKLTF TRAV26-2*01 TRAJ52*01 55.0 3527.0 TGTGCCAGCAGCTTGGGACAGGCCTACGAGCAGTACTTC CASSLGQAYEQYF TRBV7-8*01 TRBJ2-7*01 49.0 2878.0 CILPLAGGTSYGKLTF_CASSLGQAYEQYF 308 6059 EBNA3A-193-201 EBV 0.95 1022 EBNA3A-193-201 243 5816 12 EBV EBNA3A FLRGRAYGL effector T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-B*08:01 B2M MHCI -6030 chip0423_198106 15.45 11.3 Chip2 T1D_6 T1D TGTGCAGCAAGCAAGTTTGTGGGGGTGGTGCTGTCGGCCTCACCTTT CAASKFVgg?GGAVGLTF TRAV23/DV6*01 TRAJ45*01 16.0 434.0 TGTGCCAGCAGCTTGGGACAGGCCTACGAGCAGTACTTC CASSLGQAYEQYF TRBV7-8*01 TRBJ2-7*01 20.0 1358.0 CAASKFVgg?GGAVGLTF_CASSLGQAYEQYF 1 3612 EBNA3A-193-201 EBV 0.45 1022 NEG 229 3383 12 EBV EBNA3A FLRGRAYGL effector T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-B*08:01 B2M MHCI -6031 chip0423_784735 5.12 12.19 Chip2 T1D_6 T1D _ 6746 5404 ZNT8-YAK-9 ZNT8 0.7 59 NEG 217 5187 6 HomoSapiens ZNT8 YAKWKLCSA central memory T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-B*08:01 B2M MHCI -6032 chip0423_32477 13.39 6.71 Chip2 T1D_6 T1D TGCATCCTCCCACTTGCTGGTGGTACTAGCTATGGAAAGCTGACATTT CILPLAGGTSYGKLTF TRAV26-2*01 TRAJ52*01 74.0 3623.0 TGTGCCAGCAGCTTGGGACAGGCCTACGAGCAGTACTTC CASSLGQAYEQYF TRBV7-8*01 TRBJ2-7*01 39.0 1757.0 CILPLAGGTSYGKLTF_CASSLGQAYEQYF 308 5418 EBNA3A-193-201 EBV 1.0 1022 NEG 251 5167 10 EBV EBNA3A FLRGRAYGL effector memory T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-B*08:01 B2M MHCI -6033 chip0423_773230 9.83 7.08 Chip2 T1D_4 T1D TGTGCCAGCAGCCAAGTCAACAACCCGGGGGATGGCTACACCTTC CASSQVNNPGDGYTF TRBV14*01 TRBJ1-2*01 21.0 637.0 _CASSQVNNPGDGYTF 94 6333 EBNA3A-158-166 EBV 0.53 444 NEG 221 6112 10 EBV EBNA3A QAKWRLQTL effector memory T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-B*08:01 B2M MHCI -6034 chip0423_341531 7.79 8.9 Chip2 T1D_6 T1D TGCATCCTCCCACTTGCTGGTGGTACTAGCTATGGAAAGCTGACATTT CILPLAGGTSYGKLTF TRAV26-2*01 TRAJ52*01 85.0 3009.0 TGTGCCAGCAGCTTGGGACAGGCCTACGAGCAGTACTTC CASSLGQAYEQYF TRBV7-8*01 TRBJ2-7*01 22.0 938.0 CILPLAGGTSYGKLTF_CASSLGQAYEQYF 308 10241 EBNA3A-193-201 EBV 0.88 1022 EBNA3A-193-201 259 9982 8 EBV EBNA3A FLRGRAYGL effector memory T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-B*08:01 B2M MHCI -6035 chip0423_564628 10.75 6.75 Chip2 T1D_4 T1D TGTGCCGTCTGGAGGGACGGAGCCTACGAGCAGTACTTC CAVWRDGAYEQYF TRBV28*01 TRBJ2-7*01 33.0 2790.0 _CAVWRDGAYEQYF 12 7544 EBV-LMP1-1 EBV 0.45 237 NEG 275 7269 10 EBV LMP1 YLLEMLWRL effector memory T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*02:01 B2M MHCI -6036 chip0423_205562 -1.86 7.4 Chip2 T1D_6 T1D TGTGCCGTGAACAAAGAGGCAGGAACTGCTCTGATCTTT CAVNKEAGTALIF TRAV12-2*01 TRAJ15*01 27.0 1662.0 TGTGCCAGCAGCTTACCCGGGACTTCTCCGGGCTACACCTTC CASSLPGTSPGYTF TRBV7-6*01 TRBJ1-2*01 17.0 1009.0 CAVNKEAGTALIF_CASSLPGTSPGYTF 1 9556 PREINS-6-14 INS 0.56 20 NEG 221 9335 3 HomoSapiens PREINS RLLPLLALL Naive T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*02:01 B2M MHCI -6037 chip0423_699412 10.88 6.7 Chip2 T1D_4 T1D TGCATCGTCAGAGAGGGAGGAGGTGCTGACGGACTCCCCTTT CIVREGGGADGLPF TRAV26-1*01 TRAJ45*01 76.0 6121.0 TGTGCCAGCAGCTTAGCGGTCGAAGAAGGGCCCCAGCATTTT CASSLAVEEGPQHF TRBV7-9*01 TRBJ1-5*01 52.0 2037.0 CIVREGGGADGLPF_CASSLAVEEGPQHF 1 5545 BZLF1-190-197 EBV 0.85 2156 BZLF1-190-197 254 5291 10 EBV BZLF1 RAKFKQLL effector memory T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-B*08:01 B2M MHCI -6038 chip0423_110135 10.18 10.5 Chip2 T1D_4 T1D TGCCTCGTGGGTGAGATTAACAATGACATGCGCTTT CLVGEINNDMRF TRAV4*01 TRAJ43*01 24.0 2012.0 CLVGEINNDMRF_ 1 5075 BZLF1-190-197 EBV 0.76 2156 NEG 222 4853 9 EBV BZLF1 RAKFKQLL effector memory T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-B*08:01 B2M MHCI -6039 chip0423_87594 10.57 7.14 Chip2 T1D_4 T1D TGTGTTGTGAGTGATATGGAATATGGAAACAAACTGGTCTTT CVVSDMEYGNKLVF TRAV8-2*01 TRAJ47*01 50.0 2132.0 TGTGCCAGCAGCTTAGTGGTTAGCCACGGGGAGCTGTTTTTT CASSLVVSHGELFF TRBV7-2*01 TRBJ2-2*01 93.0 4378.0 CVVSDMEYGNKLVF_CASSLVVSHGELFF 2 5707 BZLF1-190-197 EBV 0.76 2156 NEG 259 5448 10 EBV BZLF1 RAKFKQLL effector memory T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-B*08:01 B2M MHCI -6040 chip0423_793428 13.09 6.94 Chip2 T1D_4 T1D TGTGCCAGCAGCTTAGGAGGGGGAGAGGGGGCCAGTGAGCAGTTCTTC CASSLGGGEGASEQFF TRBV7-6*01 TRBJ2-1*01 4.0 308.0 _CASSLGGGEGASEQFF 10 3975 EBNA3A-193-201 EBV 0.56 1022 NEG 248 3727 10 EBV EBNA3A FLRGRAYGL effector memory T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-B*08:01 B2M MHCI -6041 chip0423_606126 11.75 6.25 Chip2 T1D_4 T1D TGTGCCAGCAGCCAAGTCACCAACCCGGGGGATTGCTACACCTTC CASSQVTNPGDCYTF TRBV14*01 TRBJ1-2*01 2.0 94.0 _CASSQVTNPGDCYTF 1 5973 EBNA3A-158-166 EBV 0.58 444 NEG 252 5721 10 EBV EBNA3A QAKWRLQTL effector memory T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-B*08:01 B2M MHCI -6042 chip0423_356838 7.82 11.72 Chip2 T1D_5 T1D TGTGCCAGCAGCTAGAAGGCACCGGGGAGCTGTTTTTT CASS*Kg?cTGELFF TRBV7-9*01 TRBJ2-2*01 1.0 63.0 _CASS*Kg?cTGELFF 1 4396 BZLF1-190-197 EBV 0.7 2156 NEG 224 4172 7 EBV BZLF1 RAKFKQLL transitional T cells between effector and memory populations PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-B*08:01 B2M MHCI -6043 chip0423_559914 6.5 14.33 Chip2 T1D_5 T1D TGTGCTCCCTCCGAAACCTCCTACGACAAGGTGATATTT CAPSETSYDKVIF TRAV13-1*01 TRAJ50*01 5.0 416.0 TGTGCCAGCAGCTTAGTACAGGGTGTCCACAATGAGCAGTTCTTC CASSLVQGVHNEQFF TRBV7-9*01 TRBJ2-1*01 18.0 822.0 CAPSETSYDKVIF_CASSLVQGVHNEQFF 2 5849 BZLF1-190-197 EBV 0.56 2156 NEG 239 5610 7 EBV BZLF1 RAKFKQLL transitional T cells between effector and memory populations PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-B*08:01 B2M MHCI -6044 chip0423_852312 14.12 7.52 Chip2 T1D_6 T1D TGCAGCGTGGGGACAGGGGGCACTAATGAAAAACTGTTTTTT CSVGTGGTNEKLFF TRBV29-1*01 TRBJ1-4*01 9.0 222.0 _CSVGTGGTNEKLFF 638 3643 EBV-BLMF1 EBV 0.83 2531 NEG 248 3395 10 EBV BLMF1 GLCTLVAML effector memory T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*02:01 B2M MHCI -6045 chip0423_469992 -0.99 6.57 Chip2 T1D_5 T1D TGTGCCAGCAGTTTTGGACGAGGCGGCGAGCAGTACTTC CASSFGRGGEQYF TRBV27*01 TRBJ2-7*01 18.0 793.0 _CASSFGRGGEQYF 1 7627 G6PC2-YLK-8 IGRP 0.45 27 NEG 201 7426 3 HomoSapiens G6PC2 YLKTNLFL Naive T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-B*08:01 B2M MHCI -6046 chip0423_307630 5.56 13.32 Chip2 T1D_6 T1D TGTGTGGTCCTGGGGGGAACCGACAAGCTCATCTTT CVVLGGTDKLIF TRAV12-1*01 TRAJ34*01 31.0 3066.0 TGTGCCAGCAGTTTTGGACAAAACACCGGGGAGCTGTTTTTT CASSFGQNTGELFF TRBV27*01 TRBJ2-2*01 83.0 4229.0 CVVLGGTDKLIF_CASSFGQNTGELFF 1 7649 M1 FLU 0.76 1250 M1 226 7423 7 InfluenzaA M1 GILGFVFTL transitional T cells between effector and memory populations PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*02:01 B2M MHCI -6047 chip0423_606166 15.06 8.69 Chip2 T1D_5 T1D TGTGCAATGAGAGAGGGCGAGGGTGGAGGCTTCAAAACTATCTTT CAMREGEGGGFKTIF TRAV14/DV4*01 TRAJ9*01 1.0 42.0 TGTGCCAGCAGCTCCGGACTAGCGGGGGGCTCTCACACCGGGGAGCTGTTTTTT CASSSGLAGGSHTGELFF TRBV11-1*01 TRBJ2-2*01 53.0 2118.0 CAMREGEGGGFKTIF_CASSSGLAGGSHTGELFF 10 4538 BZLF1-190-197 EBV 0.44 2156 NEG 239 4299 12 EBV BZLF1 RAKFKQLL effector T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-B*08:01 B2M MHCI -6048 chip0423_346633 13.06 7.33 Chip2 T1D_6 T1D TGCATCCTCCCACTTGCTGGTGGTACTAGCTATGGAAAGCTGACATTT CILPLAGGTSYGKLTF TRAV26-2*01 TRAJ52*01 2.0 86.0 TGTGCCAGCAGCTTGGGACAGGCCTACGAGCAGTACTTC CASSLGQAYEQYF TRBV7-8*01 TRBJ2-7*01 6.0 532.0 CILPLAGGTSYGKLTF_CASSLGQAYEQYF 308 4266 EBNA3A-193-201 EBV 0.92 1022 NEG 226 4040 10 EBV EBNA3A FLRGRAYGL effector memory T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-B*08:01 B2M MHCI -6049 chip0423_66286 12.63 10.65 Chip2 T1D_6 T1D TGCATCCTCCCACTTGCTGGTGGTACTAGCTATGGAAAGCTGACATTT CILPLAGGTSYGKLTF TRAV26-2*01 TRAJ52*01 2.0 45.0 TGTGCCAGCAGCTTGGGACAGGCCTACGAGCAGTACTTC CASSLGQAYEQYF TRBV7-8*01 TRBJ2-7*01 14.0 757.0 CILPLAGGTSYGKLTF_CASSLGQAYEQYF 308 5179 EBNA3A-193-201 EBV 0.53 1022 NEG 231 4948 9 EBV EBNA3A FLRGRAYGL effector memory T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-B*08:01 B2M MHCI -6050 chip0423_45814 7.6 10.04 Chip2 T1D_6 T1D TGTGCCAGCAGTGTCGACAGGGGTTGCCTACGCGCAGTACTTC CASSVDR??gVAYAQYF TRBV2*01 TRBJ2-7*01 3.0 143.0 _CASSVDR??gVAYAQYF 1 7658 EBNA3A-193-201 EBV 0.87 1022 EBNA3A-193-201 236 7422 8 EBV EBNA3A FLRGRAYGL effector memory T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-B*08:01 B2M MHCI -6051 chip0423_708470 8.39 11.3 Chip2 T1D_5 T1D TGTGCAGCGGCGGAAACCTCCTACGACAAGGTGATATTT CAAAETSYDKVIF TRAV13-1*01 TRAJ50*01 23.0 1340.0 TGTGCCAGCCAACTAGCGGGAGGCACCGGGGAGCTGTTTTTT CASQLAGGTGELFF TRBV24-1*01 TRBJ2-2*01 47.0 2990.0 CAAAETSYDKVIF_CASQLAGGTGELFF 131 7748 BZLF1-190-197 EBV 0.67 2156 NEG 240 7508 7 EBV BZLF1 RAKFKQLL transitional T cells between effector and memory populations PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-B*08:01 B2M MHCI -6052 chip0423_357597 5.84 13.17 Chip2 T1D_6 T1D TGTGCCAGCAGCTTAGCGGGTCGTGAGGGTACGCAGTATTTT CASSLAGREGTQYF TRBV11-3*01 TRBJ2-3*01 7.0 314.0 _CASSLAGREGTQYF 13 3740 NP380-388 FLU 0.67 60 NEG 240 3500 7 InfluenzaA NP ELRSRYWAI transitional T cells between effector and memory populations PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-B*08:01 B2M MHCI -6053 chip0423_616456 7.59 9.83 Chip2 T1D_5 T1D TGTGCAGCGGGGGAAACCTCCTACGACAAGGTGATATTT CAAGETSYDKVIF TRAV13-1*01 TRAJ50*01 2.0 109.0 CAAGETSYDKVIF_ 3 6505 BZLF1-190-197 EBV 0.81 2156 BZLF1-190-197 219 6286 8 EBV BZLF1 RAKFKQLL effector memory T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-B*08:01 B2M MHCI -6054 chip0423_222440 10.95 7.45 Chip2 T1D_4 T1D TGGGCTGTGTGGGACGCGACGTGGGATGGCAAGATCATCTTT WAVWDATWDGKIIF TRAV3*01 TRAJ30*01 15.0 927.0 TGTGCCAGCAGCTTAGGAGGGGGAGAGGGGGCCAGTGAGCAGTTCTTC CASSLGGGEGASEQFF TRBV7-6*01 TRBJ2-1*01 17.0 806.0 WAVWDATWDGKIIF_CASSLGGGEGASEQFF 1 6471 EBNA3A-193-201 EBV 0.4 1022 NEG 218 6253 10 EBV EBNA3A FLRGRAYGL effector memory T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-B*08:01 B2M MHCI -6055 chip0423_412618 8.92 12.19 Chip2 T1D_4 T1D TGTGCCGTTCTTAACACCAATGCAGGCAAATCAACCTTT CAVLNTNAGKSTF TRAV12-2*01 TRAJ27*01 75.0 5667.0 TGTGCCAGCAGCGTAGAGGGGGATTCACCCCTCCACTTT CASSVEGDSPLHF TRBV9*01 TRBJ1-6*01 46.0 2535.0 CAVLNTNAGKSTF_CASSVEGDSPLHF 1 4070 EBV-BRLF1 EBV 0.43 1264 NEG 195 3875 7 EBV BRLF1 YVLDHLIVV transitional T cells between effector and memory populations PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*02:01 B2M MHCI -6056 chip0423_626161 11.32 6.43 Chip2 T1D_6 T1D TGCATCCTCCCACTTGCTGGTGGTACTAGCTATGGAAAGCTGACATTT CILPLAGGTSYGKLTF TRAV26-2*01 TRAJ52*01 32.0 1489.0 TGTGCCAGCAGCTTGGGACAGGCCTACGAGCAGTACTTC CASSLGQAYEQYF TRBV7-8*01 TRBJ2-7*01 19.0 824.0 CILPLAGGTSYGKLTF_CASSLGQAYEQYF 308 6216 EBNA3A-193-201 EBV 0.73 1022 EBNA3A-193-201 258 5958 10 EBV EBNA3A FLRGRAYGL effector memory T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-B*08:01 B2M MHCI -6057 chip0423_273559 13.47 6.6 Chip2 T1D_5 T1D TGTGCCAGCAGTCCCCCGGGGAGAAATGAAAAACTGTTTTTT CASSPPGRNEKLFF TRBV12-3*01,TRBV12-4*01 TRBJ1-4*01 57.0 1457.0 _CASSPPGRNEKLFF 11 6912 BZLF1-190-197 EBV 0.57 2156 NEG 315 6597 10 EBV BZLF1 RAKFKQLL effector memory T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-B*08:01 B2M MHCI -6058 chip0423_354972 14.65 10.74 Chip2 T1D_5 T1D TGCCTCCTGGGTGACGGCCCCGGGCAGCAGGGCCCCTCCTTTT CLLGDGP??gGSRAPPF TRAV4*01 TRAJ5*01 4.0 132.0 TGTGCCAGCAGTCCAAGTGGAAGCGGGGGCAACAATGAGCAGTTCTTC CASSPSGSGGNNEQFF TRBV12-3*01,TRBV12-4*01 TRBJ2-1*01 63.0 3187.0 CLLGDGP??gGSRAPPF_CASSPSGSGGNNEQFF 1 3232 BZLF1-190-197 EBV 0.5 2156 NEG 247 2985 12 EBV BZLF1 RAKFKQLL effector T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-B*08:01 B2M MHCI -6059 chip0423_884255 -0.76 6.95 Chip2 T1D_4 T1D TGTGCCGTGCCAGGTGACATGCGCTTT CAVPGDMRF TRAV12-2*01 TRAJ43*01 5.0 920.0 TGTGCCAGCAGTTTCGGGACTTATGGCTACACCTTC CASSFGTYGYTF TRBV28*01 TRBJ1-2*01 23.0 1760.0 CAVPGDMRF_CASSFGTYGYTF 1 7581 MART1-ALA MART1 0.45 269 NEG 219 7362 3 HomoSapiens MART1 ALAGIGILTV Naive T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*02:01 B2M MHCI -6060 chip0423_678574 5.48 8.71 Chip2 T1D_4 T1D TGTGCAGAGAGGAAATAGGAATGGAGGAAGTCAAGGACTTCTCATCTTT CAERK*EW??aGSQGLLIF TRAV5*01 TRAJ42*01 3.0 100.0 TGTGCCAGCAGTCTACAGGGAGGGAGTGATGGCTACACCTTC CASSLQGGSDGYTF TRBV6-1*01 TRBJ1-2*01 39.0 1915.0 CAERK*EW??aGSQGLLIF_CASSLQGGSDGYTF 1 7730 NP140-148 FLU 0.57 102 NEG 220 7510 6 InfluenzaA NP HSNLNDATY central memory T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*01:01 B2M MHCI -6061 chip0423_342399 14.22 8.78 Chip2 T1D_4 T1D TGCATCGTCAGAGAGGGAGGAGGTGCTGACGGACTCACCTTT CIVREGGGADGLTF TRAV26-1*01 TRAJ45*01 64.0 3954.0 TGTGCCAGCAGCTTAGCGGTCGGAGAAGGGCCCCAGCATTTT CASSLAVGEGPQHF TRBV7-9*01 TRBJ1-5*01 50.0 1982.0 CIVREGGGADGLTF_CASSLAVGEGPQHF 68 4648 BZLF1-190-197 EBV 0.96 2156 BZLF1-190-197 235 4413 12 EBV BZLF1 RAKFKQLL effector T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-B*08:01 B2M MHCI -6062 chip0423_686969 -1.33 7.13 Chip2 T1D_6 T1D TGTGCCGTAACAGGAGGAGGTGCTGACGGACTCACCTTT CAVTGGGADGLTF TRAV12-2*01 TRAJ45*01 37.0 2634.0 TGTGCTCTGAGTGATCTGACAATAACAATGACATGCGCTTT CALSDLac?NNNDMRF TRAV9-2*01 TRAJ43*01 56.0 1767.0 0.5 TGTGCCAGCAGCACCCCGGGAGGGACCGGGGAGCTGTTTTTT CASSTPGGTGELFF TRBV28*01 TRBJ2-2*01 16.0 770.0 CAVTGGGADGLTF_CASSTPGGTGELFF 1 8418 PGT-178 PGT 0.59 1480 PGT-178 245 8173 3 HomoSapiens PGT LLAGIGTVPI Naive T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*02:01 B2M MHCI -6063 chip0423_56614 8.67 9.98 Chip2 T1D_4 T1D TGCAGTGCTACTGATACTCTTCAGTATGGCTACACCTTC CSATDTLQYGYTF TRBV20-1*01 TRBJ1-2*01 27.0 2938.0 _CSATDTLQYGYTF 2 6151 EBV-BRLF1 EBV 0.5 1264 NEG 214 5937 8 EBV BRLF1 YVLDHLIVV effector memory T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*02:01 B2M MHCI -6064 chip0423_226315 -1.84 8.94 Chip2 T1D_5 T1D TGTGCCAGCTCACAGAACACCGGGGAGCTGTTTTTT CASSQNTGELFF TRBV18*01 TRBJ2-2*01 37.0 2336.0 _CASSQNTGELFF 1 6225 NP30-38 FLU 0.63 72 NP30-38 190 6035 3 InfluenzaA NP RPIIRPATL Naive T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-B*08:01 B2M MHCI -6065 chip0423_561783 -0.1 6.57 Chip2 T1D_4 T1D TGTGTGGTGACCCGATTTGGAAATGAGAAATTAACCTTT CVVTRFGNEKLTF TRAV10*01 TRAJ48*01 23.0 1976.0 TGCGCCAGCAGCTTGGCGGCCAACGGGGTATACGAGCAGTACTTC CASSLAANGVYEQYF TRBV5-1*01 TRBJ2-7*01 24.0 1260.0 CVVTRFGNEKLTF_CASSLAANGVYEQYF 1 10667 gp160-586-593 HIV 0.8 30 gp160-586-593 216 10451 3 HIV-1 gp160 YLKDQQLL Naive T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-B*08:01 B2M MHCI -6066 chip0423_363515 11.33 10.77 Chip2 T1D_4 T1D TGCATCGTCAGAGAGGGAGGAGGTGCTGACGGACTCACCTTT CIVREGGGADGLTF TRAV26-1*01 TRAJ45*01 11.0 1363.0 TGTGCCAGCAGCTTAGCGGTCGGAGAAGGGCCCCAGCATTTT CASSLAVGEGPQHF TRBV7-9*01 TRBJ1-5*01 41.0 1555.0 CIVREGGGADGLTF_CASSLAVGEGPQHF 68 5118 BZLF1-190-197 EBV 0.8 2156 BZLF1-190-197 209 4909 9 EBV BZLF1 RAKFKQLL effector memory T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-B*08:01 B2M MHCI -6067 chip0423_780159 14.45 8.02 Chip2 T1D_6 T1D TGCAGCGCCGGCAGGGACGGGACTAATGAAAAACTGTTTTTT CSAGRDGTNEKLFF TRBV29-1*01 TRBJ1-4*01 39.0 2363.0 _CSAGRDGTNEKLFF 159 2960 EBV-BLMF1 EBV 0.5 2531 NEG 276 2684 10 EBV BLMF1 GLCTLVAML effector memory T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*02:01 B2M MHCI -6068 chip0423_450302 12.85 10.72 Chip2 T1D_6 T1D TGTGCCAGCAGCTTGGGACAGGCCTACGAGCAGTACTTC CASSLGQAYEQYF TRBV7-8*01 TRBJ2-7*01 4.0 257.0 _CASSLGQAYEQYF 175 4295 EBNA3A-193-201 EBV 0.6 1022 NEG 243 4052 9 EBV EBNA3A FLRGRAYGL effector memory T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-B*08:01 B2M MHCI -6069 chip0423_266619 10.42 10.53 Chip2 T1D_4 T1D _ 6746 6610 BZLF1-190-197 EBV 0.66 2156 BZLF1-190-197 202 6408 9 EBV BZLF1 RAKFKQLL effector memory T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-B*08:01 B2M MHCI -6070 chip0423_740900 11.97 6.82 Chip2 T1D_6 T1D TGTGCCAGCAGCTTGGGACAGGCCTACGAGCAGTACTTC CASSLGQAYEQYF TRBV7-8*01 TRBJ2-7*01 5.0 215.0 _CASSLGQAYEQYF 175 4933 EBNA3A-193-201 EBV 0.93 1022 NEG 238 4695 10 EBV EBNA3A FLRGRAYGL effector memory T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-B*08:01 B2M MHCI -6071 chip0423_193086 12.41 6.15 Chip2 T1D_4 T1D TGTGCCAGCAGCTTAGGGCAAGCCTACGAGCAGTACTTC CASSLGQAYEQYF TRBV7-8*01 TRBJ2-7*01 38.0 1772.0 _CASSLGQAYEQYF 175 5339 EBNA3A-193-201 EBV 0.67 1022 NEG 249 5090 10 EBV EBNA3A FLRGRAYGL effector memory T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-B*08:01 B2M MHCI -6072 chip0423_81457 10.57 6.62 Chip2 T1D_5 T1D TGTGCCAGCCAACTAGCGGGAGGCACCGGGGAGCTGTTTTTT CASQLAGGTGELFF TRBV24-1*01 TRBJ2-2*01 10.0 388.0 _CASQLAGGTGELFF 69 7289 BZLF1-190-197 EBV 0.58 2156 NEG 207 7082 10 EBV BZLF1 RAKFKQLL effector memory T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-B*08:01 B2M MHCI -6073 chip0423_87326 -1.08 9.06 Chip2 T1D_6 T1D TGTGCTGTCAGAAATAACAATGACATGCGCTTT CAVRNNNDMRF TRAV41*01 TRAJ43*01 9.0 659.0 TGCAGTGCTCTATATACCGGGACTGCGTCCTACGAGCAGTACTTC CSALYTGTASYEQYF TRBV20-1*01 TRBJ2-7*01 3.0 180.0 CAVRNNNDMRF_CSALYTGTASYEQYF 1 6477 IGRP-215-223 IGRP 0.64 5 NEG 204 6273 3 HomoSapiens IGRP FLFAVGFYL Naive T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*02:01 B2M MHCI -6074 chip0423_176061 11.67 12.71 Chip2 T1D_4 T1D TGTGTGGTGAACCTCGACACCGACAAGCTCATCTTT CVVNLDTDKLIF TRAV12-1*01 TRAJ34*01 1.0 51.0 TGCAGCGCGGGACAGGGTCCCTACGAGCAGTACTTC CSAGQGPYEQYF TRBV29-1*01 TRBJ2-7*01 38.0 3019.0 CVVNLDTDKLIF_CSAGQGPYEQYF 3 3497 BZLF1-190-197 EBV 1.0 2156 NEG 256 3241 11 EBV BZLF1 RAKFKQLL effector T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-B*08:01 B2M MHCI -6075 chip0423_316168 8.07 8.25 Chip2 T1D_5 T1D TGTGCAACAGAGGAAACCTCCTACGACAAGGTGATATTT CATEETSYDKVIF TRAV13-1*01 TRAJ50*01 29.0 2573.0 TGTGCCAGCAGCTTACTAGGGGAGACTGGAAACACCATATATTTT CASSLLGETGNTIYF TRBV7-9*01 TRBJ1-3*01 12.0 358.0 CATEETSYDKVIF_CASSLLGETGNTIYF 1 10428 BZLF1-190-197 EBV 0.66 2156 BZLF1-190-197 265 10163 8 EBV BZLF1 RAKFKQLL effector memory T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-B*08:01 B2M MHCI -6076 chip0423_653135 11.36 10.81 Chip2 T1D_4 T1D TGCATCCTGCCTCTTGCTGGTGGTACTAGCTATGGAAAGCTGACATTT CILPLAGGTSYGKLTF TRAV26-2*01 TRAJ52*01 48.0 2013.0 TGTGCCAGCAGCTTAGGGCAAGCCTACGAGCAGTACTTC CASSLGQAYEQYF TRBV7-8*01 TRBJ2-7*01 89.0 3769.0 CILPLAGGTSYGKLTF_CASSLGQAYEQYF 308 6105 EBNA3A-193-201 EBV 0.42 1022 NEG 222 5883 9 EBV EBNA3A FLRGRAYGL effector memory T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-B*08:01 B2M MHCI -6077 chip0423_289105 10.01 6.78 Chip2 T1D_4 T1D TGCAGCGTTGGAACGGGGGGAACTAATGAAAAACTGTTTTTT CSVGTGGTNEKLFF TRBV29-1*01 TRBJ1-4*01 125.0 4564.0 _CSVGTGGTNEKLFF 638 8659 EBV-BLMF1 EBV 0.64 2531 NEG 257 8402 10 EBV BLMF1 GLCTLVAML effector memory T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*02:01 B2M MHCI -6078 chip0423_184165 14.94 9.77 Chip2 T1D_5 T1D TGTGCAGCCCCGGAAACCTCCTACGACAAGGTGATATTT CAAPETSYDKVIF TRAV13-1*01 TRAJ50*01 30.0 2127.0 TGTGCCAGCAGTCCCCCCGGGGCCAACGTCCTGACTTTC CASSPPGANVLTF TRBV12-3*01,TRBV12-4*01 TRBJ2-6*01 31.0 2813.0 CAAPETSYDKVIF_CASSPPGANVLTF 1 3013 BZLF1-190-197 EBV 0.67 2156 NEG 249 2764 12 EBV BZLF1 RAKFKQLL effector T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-B*08:01 B2M MHCI -6079 chip0423_728243 11.94 9.55 Chip2 T1D_6 T1D TATGCCAGCAGCGTTAGCGGGGCCCCCTACGAGCAGTACTTC YASSVSGAPYEQYF TRBV9*01 TRBJ2-7*01 25.0 2474.0 _YASSVSGAPYEQYF 1 4464 EBNA3A-193-201 EBV 0.44 1022 NEG 222 4242 10 EBV EBNA3A FLRGRAYGL effector memory T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-B*08:01 B2M MHCI -6080 chip0423_799183 9.17 8.3 Chip2 T1D_4 T1D TGTGCCGCCTCTGAAACCTCCTACGACAAGGTGATATTT CAASETSYDKVIF TRAV13-1*01 TRAJ50*01 3.0 160.0 TGTGCCAGCAGCTCGACAGGGGGCGGGGATCAGCCCCAGCATTTT CASSSTGGGDQPQHF TRBV7-9*01 TRBJ1-5*01 21.0 1024.0 CAASETSYDKVIF_CASSSTGGGDQPQHF 9 6613 BZLF1-190-197 EBV 0.5 2156 NEG 255 6358 8 EBV BZLF1 RAKFKQLL effector memory T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-B*08:01 B2M MHCI -6081 chip0423_297988 -0.43 9.45 Chip2 T1D_6 T1D TGTGCCAGTAGTCCGGGGTTCTCTAGCAATCAGCCCCAGCATTTT CASSPGFSSNQPQHF TRBV19*01 TRBJ1-5*01 24.0 720.0 _CASSPGFSSNQPQHF 1 8561 ZNT8-YAK-9 ZNT8 0.91 59 ZNT8-YAK-9 208 8353 3 HomoSapiens ZNT8 YAKWKLCSA Naive T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-B*08:01 B2M MHCI -6082 chip0423_403803 5.38 8.85 Chip2 T1D_4 T1D TGTGCTGTGAGAGACATAGGAGGTGGCTACAATAAGCTGATTTTT CAVRDIGGGYNKLIF TRAV3*01 TRAJ4*01 45.0 1937.0 TGTGCCAGCAGCCTCAACAGGGGCAACAATGAGCAGTTCTTC CASSLNRGNNEQFF TRBV13*01 TRBJ2-1*01 39.0 3150.0 CAVRDIGGGYNKLIF_CASSLNRGNNEQFF 1 9895 GFAP-143-151 GFAP 0.77 5 GFAP-143-151 192 9703 6 HomoSapiens GFAP NLAQDLATV central memory T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*02:01 B2M MHCI -6083 chip0423_771630 13.22 6.7 Chip2 T1D_6 T1D TGTGCCAGCAGCTTGGGACAGGCCTACGAGCAGTACTTC CASSLGQAYEQYF TRBV7-8*01 TRBJ2-7*01 2.0 39.0 _CASSLGQAYEQYF 175 4309 EBNA3A-193-201 EBV 0.8 1022 NEG 269 4040 10 EBV EBNA3A FLRGRAYGL effector memory T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-B*08:01 B2M MHCI -6084 chip0423_40519 5.86 10.03 Chip2 T1D_4 T1D TGCAGTGCCTCTCGTGACTCCTACGAGCAGTACTTC CSASRDSYEQYF TRBV20-1*01 TRBJ2-7*01 4.0 254.0 _CSASRDSYEQYF 7 4683 EBV-LMP1-1 EBV 0.79 237 EBV-LMP1-1 202 4481 6 EBV LMP1 YLLEMLWRL central memory T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*02:01 B2M MHCI -6085 chip0423_119653 5.69 9.3 Chip2 T1D_4 T1D TGTGCCGTGAACCGCTTCTTGGCCGACAGAGGCTCAACCCTGGGGAGGCTATACTTT CAVNRFLADRGSTLGRLYF TRAV12-2*01 TRAJ18*01 8.0 191.0 TGCGCCAGCAGCCAAGAAGTCACAGATACGCAGTATTTT CASSQEVTDTQYF TRBV4-3*01 TRBJ2-3*01 115.0 4961.0 CAVNRFLADRGSTLGRLYF_CASSQEVTDTQYF 4 6944 EBV-LMP1-1 EBV 0.67 237 NEG 218 6726 6 EBV LMP1 YLLEMLWRL central memory T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*02:01 B2M MHCI -6086 chip0423_627324 12.16 6.36 Chip2 T1D_5 T1D TGTGCAATGAGAGAGGGTGAAGGACAAGGCTTCTCCTTTATCTTT CAMREGEGQGFSFIF TRAV14/DV4*01 TRAJ11*01 42.0 1719.0 CGCGCCAGTCGGACAGGTTTCTCCTACGAGCAGTACTTC RASRTGFSYEQYF TRBV5-1*01 TRBJ2-7*01 30.0 1862.0 CAMREGEGQGFSFIF_RASRTGFSYEQYF 1 5952 BZLF1-190-197 EBV 0.75 2156 NEG 240 5712 10 EBV BZLF1 RAKFKQLL effector memory T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-B*08:01 B2M MHCI -6087 chip0423_438040 6.76 12.74 Chip2 T1D_6 T1D TGTGTTGTTATAGACTATGGTCAGAATTTTGTCTTT CVVIDYGQNFVF TRAV8-2*01 TRAJ26*01 22.0 2257.0 TGTGCCAGCAGCGCCTGGGGGGGGGCGGACCCCACAGATACGCAGTATTTT CASSAWGGADPTDTQYF TRBV9*01 TRBJ2-3*01 8.0 500.0 CVVIDYGQNFVF_CASSAWGGADPTDTQYF 4 5653 GFAP-LRL-8 GFAP 0.69 18 NEG 226 5427 7 HomoSapiens GFAP LRLRLDQL transitional T cells between effector and memory populations PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-B*08:01 B2M MHCI -6088 chip0423_554797 -2.07 7.41 Chip2 T1D_6 T1D TGTGCAATGAGCCTTTCGAACTTTGGAAATGAGAAATTAACCTTT CAMSLSNFGNEKLTF TRAV12-3*01 TRAJ48*01 28.0 1566.0 TGTGCAATGAGCCTTTTCGAACTTTGGAAATGAGAAATTAACCTTT CAMSLFEct??ttGNEKLTF TRAV12-3*01 TRAJ48*01 21.0 1245.0 0.34 TGTGCCAGCAGTTACGCCGGGACCCCGGGCCTCAATGAGCAGTTCTTC CASSYAGTPGLNEQFF TRBV6-5*01 TRBJ2-1*01 55.0 1912.0 CAMSLSNFGNEKLTF_CASSYAGTPGLNEQFF 1 7920 PGT-178 PGT 0.75 1480 PGT-178 224 7696 3 HomoSapiens PGT LLAGIGTVPI Naive T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*02:01 B2M MHCI -6089 chip0423_541706 12.47 6.98 Chip2 T1D_6 T1D TGCATCCTCCCACTTGCTGGTGGTACTAGCTATGGAAAGCTGACATTT CILPLAGGTSYGKLTF TRAV26-2*01 TRAJ52*01 9.0 459.0 TGTGCCAGCAGCTTGGGACAGGCCTACGAGCAGTACTTC CASSLGQAYEQYF TRBV7-8*01 TRBJ2-7*01 14.0 744.0 CILPLAGGTSYGKLTF_CASSLGQAYEQYF 308 4523 EBNA3A-193-201 EBV 1.0 1022 NEG 246 4277 10 EBV EBNA3A FLRGRAYGL effector memory T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-B*08:01 B2M MHCI -6090 chip0423_41680 6.55 10.96 Chip2 T1D_4 T1D TGTGTTGTGCACCGCAACCCGGGGGGGCAGCTTATCTTC CVVHRNPGGQLIF TRAV8-2*01 TRAJ23*01 22.0 1122.0 TGTGCCAGCAGTTTTAGGCCCCCCACGAGTAATTCACCCCTCCACTTT CASSFRPPTSNSPLHF TRBV28*01 TRBJ1-6*01 20.0 831.0 CVVHRNPGGQLIF_CASSFRPPTSNSPLHF 1 7623 GAD2-MMI-8 GAD65 0.86 40 GAD2-MMI-8 207 7416 7 HomoSapiens GAD2 MMIARFKM transitional T cells between effector and memory populations PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-B*08:01 B2M MHCI -6091 chip0423_572389 -1.04 10.07 Chip2 T1D_6 T1D TGTGCAATGAGCTATTCTAACTTTGGAAATGAGAAATTAACCTTT CAMSYSNFGNEKLTF TRAV12-3*01 TRAJ48*01 52.0 2065.0 TGTGCCAGTAGTTCAGGACAGGGGGCAGTTGAGATCGACAATGAGCAGTTCTTC CASSSGQGAVEIDNEQFF TRBV19*01 TRBJ2-1*01 12.0 353.0 CAMSYSNFGNEKLTF_CASSSGQGAVEIDNEQFF 1 7783 PGT-178 PGT 0.74 1480 PGT-178 216 7567 3 HomoSapiens PGT LLAGIGTVPI Naive T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*02:01 B2M MHCI -6092 chip0423_563309 12.14 13.11 Chip2 T1D_5 T1D TGTGCAGCAACGGAAACCTCCTACGACAAGGTGATATTT CAATETSYDKVIF TRAV13-1*01 TRAJ50*01 18.0 1318.0 TGTGCCAGCAGCAGCCTTACGAACACTGAAGCTTTCTTT CASSSLTNTEAFF TRBV7-9*01 TRBJ1-1*01 38.0 2557.0 CAATETSYDKVIF_CASSSLTNTEAFF 3 2106 BZLF1-190-197 EBV 0.8 2156 NEG 232 1874 11 EBV BZLF1 RAKFKQLL effector T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-B*08:01 B2M MHCI -6093 chip0423_351122 16.03 9.69 Chip2 T1D_4 T1D TGGGGAGCAGACTCCCTGGGAGGAACCTACAAATACATCTTT WGADSLGGTYKYIF TRAV34*01 TRAJ40*01 5.0 142.0 TGCAGCGTTGGGTCGGGAGAGGGATACGAGCAGTACTTC CSVGSGEGYEQYF TRBV29-1*01 TRBJ2-7*01 61.0 5095.0 WGADSLGGTYKYIF_CSVGSGEGYEQYF 1 3801 BZLF1-190-197 EBV 0.62 2156 NEG 269 3532 12 EBV BZLF1 RAKFKQLL effector T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-B*08:01 B2M MHCI -6094 chip0423_228942 12.1 13.92 Chip2 T1D_5 T1D TGTGCTAGTGGTCCGGACATATCCTACTCCTACGAGCAGTACTTC CASGPDISYSYEQYF TRBV12-5*01 TRBJ2-7*01 79.0 5412.0 _CASGPDISYSYEQYF 10 1013 BZLF1-190-197 EBV 0.58 2156 BZLF1-190-197 231 782 11 EBV BZLF1 RAKFKQLL effector T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-B*08:01 B2M MHCI -6095 chip0423_752 -2.11 9.16 Chip2 T1D_4 T1D TGTGCATCTTCAATATCTAACTTTGGAAATGAGAAATTAACCTTT CASSISNFGNEKLTF TRAV12-3*01 TRAJ48*01 43.0 1627.0 TGTGCCAGCAGCTTAGGGGAAATGCAGTTCTTC CASSLGEMQFF TRBV7-6*01 TRBJ2-1*01 45.0 3897.0 CASSISNFGNEKLTF_CASSLGEMQFF 1 7047 PGT-178 PGT 0.64 1480 PGT-178 204 6843 3 HomoSapiens PGT LLAGIGTVPI Naive T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*02:01 B2M MHCI -6096 chip0423_420917 8.94 7.5 Chip2 T1D_5 T1D TGTGCAGCCTCAGAAACCTCCTACGACAAGGTGATATTT CAASETSYDKVIF TRAV13-1*01 TRAJ50*01 10.0 748.0 TGTGCCAGCAGCTTACTAGGTCAGGCCTATAATTCACCCCTCCACTTT CASSLLGQAYNSPLHF TRBV7-9*01 TRBJ1-6*01 27.0 932.0 CAASETSYDKVIF_CASSLLGQAYNSPLHF 1 8002 BZLF1-190-197 EBV 0.45 2156 BZLF1-190-197 213 7789 8 EBV BZLF1 RAKFKQLL effector memory T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-B*08:01 B2M MHCI -6097 chip0423_613991 9.12 8.38 Chip2 T1D_4 T1D TGCGGCACAGAACGAGATTCAGGAAACACACCTCTTGTCTTT CGTERDSGNTPLVF TRAV30*01 TRAJ29*01 57.0 2512.0 TGTGCCAGCAGCTGGGGCCCTGAAGCTTTCTTT CASSWGPEAFF TRBV7-9*01 TRBJ1-1*01 3.0 165.0 CGTERDSGNTPLVF_CASSWGPEAFF 1 6432 EBNA3A-193-201 EBV 0.76 1022 EBNA3A-193-201 211 6221 8 EBV EBNA3A FLRGRAYGL effector memory T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-B*08:01 B2M MHCI -6098 chip0423_589757 6.33 12.27 Chip2 T1D_4 T1D TGTGCCAGTAGTGGCCGGTCCACAGATACGCAGTATTTT CASSGRSTDTQYF TRBV19*01 TRBJ2-3*01 18.0 893.0 _CASSGRSTDTQYF 5 7631 M1 FLU 0.53 1250 M1 210 7421 7 InfluenzaA M1 GILGFVFTL transitional T cells between effector and memory populations PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*02:01 B2M MHCI -6099 chip0423_110913 10.1 7.66 Chip2 T1D_5 T1D TGTGCCAGCCAACTAGCGGGAGGCACCGGGGCGCTGTTTTTT CASQLAGGTGALFF TRBV24-1*01 TRBJ2-2*01 8.0 360.0 _CASQLAGGTGALFF 1 5305 BZLF1-190-197 EBV 0.69 2156 NEG 223 5082 10 EBV BZLF1 RAKFKQLL effector memory T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-B*08:01 B2M MHCI -6100 chip0423_151031 12.14 8.75 Chip2 T1D_6 T1D TGCAGCGCCGGCAGGGACGGGACTAATGAAAAACTGTTTTTG CSAGRDGTNEKLFL TRBV29-1*01 TRBJ1-4*01 19.0 1137.0 _CSAGRDGTNEKLFL 1 4391 EBV-BLMF1 EBV 1.0 2531 NEG 236 4155 10 EBV BLMF1 GLCTLVAML effector memory T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*02:01 B2M MHCI -6101 chip0423_126438 12.14 6.45 Chip2 T1D_6 T1D TCCATCCTCCCACTTGCTGGTGGTACTTGCTTTGGGATGCTGACATTT SILPLAGGTCFGMLTF TRAV26-2*01 TRAJ52*01 4.0 99.0 TGTGCCAGCAGCTTGGGACAGGCCTACGAGCAGTACTTC CASSLGQAYEQYF TRBV7-8*01 TRBJ2-7*01 38.0 2545.0 SILPLAGGTCFGMLTF_CASSLGQAYEQYF 1 8788 EBNA3A-193-201 EBV 0.91 1022 EBNA3A-193-201 281 8507 10 EBV EBNA3A FLRGRAYGL effector memory T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-B*08:01 B2M MHCI -6102 chip0423_829089 -0.86 8.54 Chip2 T1D_5 T1D TGTGCCAGCAGCGTAGAAAGGTTATCTGGGGCCAACGTCCTGACTTTC CASSVERLSGANVLTF TRBV9*01 TRBJ2-6*01 41.0 1716.0 _CASSVERLSGANVLTF 1 9474 NP30-38 FLU 0.71 72 NEG 225 9249 3 InfluenzaA NP RPIIRPATL Naive T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-B*08:01 B2M MHCI -6103 chip0423_768125 10.62 9.34 Chip2 T1D_4 T1D TGTGCTCTCGTGAATTATGGAGGAAGCCAAGGAAATCTCATCTTT CALVNYGGSQGNLIF TRAV19*01 TRAJ42*01 64.0 2006.0 TGTGCCGTCTGGAGGGACGGAGCCTACGAGCAGTACTTC CAVWRDGAYEQYF TRBV28*01 TRBJ2-7*01 46.0 3128.0 CALVNYGGSQGNLIF_CAVWRDGAYEQYF 13 5421 EBV-LMP1-1 EBV 0.75 237 NEG 237 5184 9 EBV LMP1 YLLEMLWRL effector memory T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*02:01 B2M MHCI -6104 chip0423_852999 12.18 7.66 Chip2 T1D_5 T1D TGTGCCAGCAGTCCCCCCGGGGCCAACGTCCTGACTTTC CASSPPGANVLTF TRBV12-3*01,TRBV12-4*01 TRBJ2-6*01 31.0 2632.0 _CASSPPGANVLTF 2 3768 BZLF1-190-197 EBV 0.8 2156 NEG 230 3538 10 EBV BZLF1 RAKFKQLL effector memory T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-B*08:01 B2M MHCI -6105 chip0423_40965 13.86 9.77 Chip2 T1D_4 T1D TGCATCGTCAGAGAGGGAGGAGGTGCTGACGGACTCACCTTT CIVREGGGADGLTF TRAV26-1*01 TRAJ45*01 3.0 161.0 TGTGCCAGCAGCTTAGCGGTCGGAGAAGGGCCCCAGCATTTT CASSLAVGEGPQHF TRBV7-9*01 TRBJ1-5*01 83.0 3339.0 CIVREGGGADGLTF_CASSLAVGEGPQHF 68 5132 BZLF1-190-197 EBV 0.97 2156 BZLF1-190-197 230 4902 12 EBV BZLF1 RAKFKQLL effector T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-B*08:01 B2M MHCI -6106 chip0423_481944 9.17 8.62 Chip2 T1D_4 T1D TGCATCCTGCCTCTTGCTGGTGGTACTAGCTATGGAAAGCTGACATTT CILPLAGGTSYGKLTF TRAV26-2*01 TRAJ52*01 95.0 3597.0 TGTGCCAGCAGCTTAGGGCAAGCCTACGAGCAGTACTTC CASSLGQAYEQYF TRBV7-8*01 TRBJ2-7*01 13.0 635.0 CILPLAGGTSYGKLTF_CASSLGQAYEQYF 308 5673 EBNA3A-193-201 EBV 0.67 1022 NEG 228 5445 8 EBV EBNA3A FLRGRAYGL effector memory T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-B*08:01 B2M MHCI -6107 chip0423_54834 14.93 11.31 Chip2 T1D_5 T1D TGTGCAGAGATGGAAACCTCCTACGACAAGGTGATATTT CAEMETSYDKVIF TRAV13-2*01 TRAJ50*01 17.0 1258.0 TGTGCCAGCAGCTCCTTAAGCGGGGGGGCAGGAAATGAGCAGTTCTTC CASSSLSGGAGNEQFF TRBV7-9*01 TRBJ2-1*01 23.0 1099.0 CAEMETSYDKVIF_CASSSLSGGAGNEQFF 27 3034 BZLF1-190-197 EBV 0.5 2156 NEG 228 2806 12 EBV BZLF1 RAKFKQLL effector T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-B*08:01 B2M MHCI -6108 chip0423_220814 13.9 7.38 Chip2 T1D_4 T1D TGTGCCAGCAGCTTAGCGGTCGGAGAAGGGCCCCAGCATTTT CASSLAVGEGPQHF TRBV7-9*01 TRBJ1-5*01 82.0 3255.0 _CASSLAVGEGPQHF 113 6591 BZLF1-190-197 EBV 0.68 2156 BZLF1-190-197 253 6338 10 EBV BZLF1 RAKFKQLL effector memory T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-B*08:01 B2M MHCI -6109 chip0423_640358 12.09 7.27 Chip2 T1D_6 T1D _ 6746 5020 EBNA3A-158-166 EBV 0.67 444 EBNA3A-158-166 235 4785 10 EBV EBNA3A QAKWRLQTL effector memory T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-B*08:01 B2M MHCI -6110 chip0423_201206 9.89 6.95 Chip2 T1D_4 T1D TGCAGCGTGGGGTCGGGGGAGGGCTACGAGCAGTACTTC CSVGSGEGYEQYF TRBV29-1*01 TRBJ2-7*01 107.0 7531.0 _CSVGSGEGYEQYF 5 7388 BZLF1-190-197 EBV 0.81 2156 BZLF1-190-197 253 7135 10 EBV BZLF1 RAKFKQLL effector memory T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-B*08:01 B2M MHCI -6111 chip0423_783284 14.65 10.8 Chip2 T1D_5 T1D TGTGCAGCACGGGAAACCTCCTACGACAAGGTGATATTT CAARETSYDKVIF TRAV13-1*01 TRAJ50*01 70.0 8230.0 CAARETSYDKVIF_ 15 3753 BZLF1-190-197 EBV 0.62 2156 NEG 192 3561 12 EBV BZLF1 RAKFKQLL effector T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-B*08:01 B2M MHCI -6112 chip0423_670872 11.2 6.61 Chip2 T1D_4 T1D TGCGCCAGCAGCTTGGAGCTGGGGCTTCCCTACGAGCAGTACTTC CASSLELGLPYEQYF TRBV5-1*01 TRBJ2-7*01 26.0 1366.0 _CASSLELGLPYEQYF 8 8090 EBNA3A-158-166 EBV 0.74 444 NEG 265 7825 10 EBV EBNA3A QAKWRLQTL effector memory T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-B*08:01 B2M MHCI -6113 chip0423_611906 11.1 6.68 Chip2 T1D_4 T1D TGCATCCTGCCTCTTGCTGGTGGTACTAGCTATGGAAAGCTGACATTT CILPLAGGTSYGKLTF TRAV26-2*01 TRAJ52*01 32.0 1441.0 TGTGCCAGCAGCTTAGGGCAAGCCTACGAGCAGTACTTC CASSLGQAYEQYF TRBV7-8*01 TRBJ2-7*01 67.0 3416.0 CILPLAGGTSYGKLTF_CASSLGQAYEQYF 308 6804 EBNA3A-193-201 EBV 0.6 1022 NEG 225 6579 10 EBV EBNA3A FLRGRAYGL effector memory T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-B*08:01 B2M MHCI -6114 chip0423_14295 6.98 10.8 Chip2 T1D_6 T1D TGTGCTGTGGGGACCATGGCTCTAGCAACACAGGCAAACTAATCTTT CAVGTMAct?SNTGKLIF TRAV2*01 TRAJ37*01 1.0 22.0 TGTGCCAGCAGCTTAGCGGGTCGTGAGGGTACGCAGTATTTT CASSLAGREGTQYF TRBV11-3*01 TRBJ2-3*01 13.0 536.0 CAVGTMAct?SNTGKLIF_CASSLAGREGTQYF 3 6229 NP380-388 FLU 0.69 60 NEG 257 5972 7 InfluenzaA NP ELRSRYWAI transitional T cells between effector and memory populations PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-B*08:01 B2M MHCI -6115 chip0423_270200 13.7 8.24 Chip2 T1D_6 T1D TGTGCCAGCAGCGTTAGCGGGGCCCCCTACGAGCAGTACTTC CASSVSGAPYEQYF TRBV9*01 TRBJ2-7*01 39.0 3247.0 _CASSVSGAPYEQYF 21 2232 EBNA3A-193-201 EBV 0.75 1022 NEG 229 2003 10 EBV EBNA3A FLRGRAYGL effector memory T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-B*08:01 B2M MHCI -6116 chip0423_784980 -1.73 10.98 Chip2 T1D_4 T1D TGTGCTGGCCCTCCCTTTGGCCCTGAGACATTAACCTTT CAGPPFGPETLTF TRAV21*01 TRAJ48*01 13.0 697.0 TGTGCCAGCAGTCGAAGCTCCTATAATTCACCCCTCCACTTT CASSRSSYNSPLHF TRBV12-3*01,TRBV12-4*01 TRBJ1-6*01 11.0 456.0 CAGPPFGPETLTF_CASSRSSYNSPLHF 1 5107 PB1-590-599 FLU 0.5 37 NEG 201 4906 3 InfluenzaA PB1 LVSDGGPNLY Naive T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*01:01 B2M MHCI -6117 chip0423_619679 11.35 8.49 Chip2 T1D_4 T1D TGTGCTCTCGTGAATTATGGAGGAAGCCAAGGAAATCTCATCTTT CALVNYGGSQGNLIF TRAV19*01 TRAJ42*01 112.0 3893.0 TGTGCCGTCTGGAGGGACGGAGCCTACGAGCAGTACTTC CAVWRDGAYEQYF TRBV28*01 TRBJ2-7*01 31.0 2056.0 CALVNYGGSQGNLIF_CAVWRDGAYEQYF 13 6614 EBV-LMP1-1 EBV 0.45 237 NEG 228 6386 10 EBV LMP1 YLLEMLWRL effector memory T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*02:01 B2M MHCI -6118 chip0423_151664 6.52 10.07 Chip2 T1D_6 T1D TGCATCCTCCCACTTGCTGGTGGTACTAGCTATGGAAAGCTGACATTT CILPLAGGTSYGKLTF TRAV26-2*01 TRAJ52*01 42.0 2139.0 TGTGCCAGCAGCTTGGGACAGGCCTACGAGCAGTACTTC CASSLGQAYEQYF TRBV7-8*01 TRBJ2-7*01 17.0 960.0 CILPLAGGTSYGKLTF_CASSLGQAYEQYF 308 8737 EBNA3A-193-201 EBV 0.73 1022 EBNA3A-193-201 236 8501 6 EBV EBNA3A FLRGRAYGL central memory T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-B*08:01 B2M MHCI -6119 chip0423_228348 7.19 11.79 Chip2 T1D_6 T1D TGTGCCTCCCAAGGAGGAAGCCAAGGAAATCTCATCTTT CASQGGSQGNLIF TRAV20*01 TRAJ42*01 79.0 5479.0 CASQGGSQGNLIF_ 7 6035 ROTA-VP6 ROTA 0.79 47 NEG 216 5819 7 RotavirusA VP6 TLLANVTAV transitional T cells between effector and memory populations PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*02:01 B2M MHCI -6120 chip0423_639038 7.2 11.79 Chip2 T1D_6 T1D TGTGCCTCCCAAGGAGGAAGCCAAGGAAATCTCATCTTT CASQGGSQGNLIF TRAV20*01 TRAJ42*01 7.0 518.0 TGTGCCAGCAGCTTAGGAGGACAGACAGAGACCCAGTACTTC CASSLGGQTETQYF TRBV13*01 TRBJ2-5*01 62.0 3625.0 CASQGGSQGNLIF_CASSLGGQTETQYF 13 5535 ROTA-VP6 ROTA 0.43 47 ROTA-VP6 226 5309 7 RotavirusA VP6 TLLANVTAV transitional T cells between effector and memory populations PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*02:01 B2M MHCI -6121 chip0423_443059 -0.41 7.6 Chip2 T1D_6 T1D TGTGCAATGACTATATCTAACTTTGGAAATGAGAAATTAACCTTT CAMTISNFGNEKLTF TRAV12-3*01 TRAJ48*01 85.0 3048.0 TGTGCCAGCAGCCAAGATATCGGAGGGCCGGACACCGGGGAGCTGTTTTTT CASSQDIGGPDTGELFF TRBV3-1*01 TRBJ2-2*01 71.0 2442.0 CAMTISNFGNEKLTF_CASSQDIGGPDTGELFF 1 11156 PGT-178 PGT 0.74 1480 PGT-178 230 10926 3 HomoSapiens PGT LLAGIGTVPI Naive T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*02:01 B2M MHCI -6122 chip0423_220647 9.01 8.61 Chip2 T1D_4 T1D TGTGCCAGCAGCCAAGTCAACAACCCGGGGGATGGCTACACCTTC CASSQVNNPGDGYTF TRBV14*01 TRBJ1-2*01 13.0 592.0 _CASSQVNNPGDGYTF 94 5785 EBNA3A-158-166 EBV 0.69 444 NEG 235 5550 8 EBV EBNA3A QAKWRLQTL effector memory T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-B*08:01 B2M MHCI -6123 chip0423_125345 -1.36 9.76 Chip2 T1D_5 T1D TGTGCTCTCCCGGGGAGCAACTATCAGTTAATCTGG CALPGSNYQLIW TRAV19*01 TRAJ33*01 25.0 2440.0 TGTGCCAGCCGCTTATGGGACACGTCAACGCAGTATGTA CASRLWDTSTQYV TRBV7-6*01 TRBJ2-3*01 2.0 304.0 CALPGSNYQLIW_CASRLWDTSTQYV 1 6203 GAD2-VSA-10 GAD65 0.83 21 NEG 199 6004 3 HomoSapiens GAD2 VSATAGTTVY Naive T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*01:01 B2M MHCI -6124 chip0423_121726 15.84 10.31 Chip2 T1D_4 T1D TGCATCGTCAGAGTCGTGTGTGCGGCACTGCCCGTTTACTCACCTTT CIVRVVCgc?GTARLLTF TRAV26-1*01 TRAJ44*01 27.0 1722.0 TGTGCCAGCAGCTTAGCGGTCGGAGAAGGGCCCCAGCATTTT CASSLAVGEGPQHF TRBV7-9*01 TRBJ1-5*01 6.0 156.0 CIVRVVCgc?GTARLLTF_CASSLAVGEGPQHF 1 3179 BZLF1-190-197 EBV 0.83 2156 BZLF1-190-197 251 2928 12 EBV BZLF1 RAKFKQLL effector T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-B*08:01 B2M MHCI -6125 chip0423_856731 6.62 11.08 Chip2 T1D_5 T1D TGTGCCAGCTCGCGGGACACTGCTCCAGAGCAGTACTTC CASSRDTAPEQYF TRBV18*01 TRBJ2-7*01 18.0 1296.0 _CASSRDTAPEQYF 1 9202 NP44-52 FLU 0.83 474 NP44-52 219 8983 7 InfluenzaA NP CTELKLSDY transitional T cells between effector and memory populations PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*01:01 B2M MHCI -6126 chip0423_727581 15.23 12.59 Chip2 T1D_6 T1D TGTGCAGGGTGAGGACAATAACAATGACATGCGCTTT CAG*GQ??tNNDMRF TRAV23/DV6*01 TRAJ43*01 1.0 11.0 CAG*GQ??tNNDMRF_ 1 1974 EBNA3A-193-201 EBV 1.0 1022 NEG 229 1745 12 EBV EBNA3A FLRGRAYGL effector T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-B*08:01 B2M MHCI -6127 chip0423_868983 10.44 8.62 Chip2 T1D_4 T1D TACATCGACAGAGAGGGGGGGGGTTCTGACGGACTCACCTTT YIDREGGGSDGLTF TRAV26-1*01 TRAJ45*01 9.0 581.0 TGTGCCAGCAGCTTAGCGGTCGGAGAAGGGCCCCAGCATTTT CASSLAVGEGPQHF TRBV7-9*01 TRBJ1-5*01 9.0 206.0 YIDREGGGSDGLTF_CASSLAVGEGPQHF 1 4231 BZLF1-190-197 EBV 0.73 2156 BZLF1-190-197 215 4016 10 EBV BZLF1 RAKFKQLL effector memory T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-B*08:01 B2M MHCI -6128 chip0423_348068 13.12 7.35 Chip2 T1D_6 T1D TGTGCTGTGCGAATTCTTCCTAACTTTGGAAATGAGAAATTAACCTTT CAVRILPNFGNEKLTF TRAV21*01 TRAJ48*01 68.0 1815.0 TGTGCTGTGCGAATTCTTCCTAACGTGGAAATGAGAAATTAACCTTT CAVRILPaa?RGNEKLTF TRAV21*01 TRAJ48*01 39.0 1161.0 0.27 CAVRILPNFGNEKLTF_ 2 7575 EBNA3A-158-166 EBV 0.69 444 EBNA3A-158-166 273 7302 10 EBV EBNA3A QAKWRLQTL effector memory T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-B*08:01 B2M MHCI -6129 chip0423_334545 13.74 10.14 Chip2 T1D_5 T1D TGTGCAGCGGCGGAAACCTCCTACGACAAGGTGATATTT CAAAETSYDKVIF TRAV13-1*01 TRAJ50*01 71.0 6242.0 TATGCCAGCCAACTAGCGGGAGGCACCGGGGAGCTGTTTTTT YASQLAGGTGELFF TRBV24-1*01 TRBJ2-2*01 29.0 1741.0 CAAAETSYDKVIF_YASQLAGGTGELFF 1 2477 BZLF1-190-197 EBV 0.71 2156 NEG 202 2275 12 EBV BZLF1 RAKFKQLL effector T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-B*08:01 B2M MHCI -6130 chip0423_730399 15.6 9.51 Chip2 T1D_5 T1D TGTGCCGCAAGCGAAACCTCCTACGACAAGGTGATATTT CAASETSYDKVIF TRAV13-1*01 TRAJ50*01 28.0 1969.0 TGTGCCAGCAGCTCCCTCGGACAGAAGAACACTGAAGCTTTCTTT CASSSLGQKNTEAFF TRBV7-9*01 TRBJ1-1*01 68.0 2467.0 CAASETSYDKVIF_CASSSLGQKNTEAFF 1 2829 BZLF1-190-197 EBV 0.8 2156 NEG 222 2607 12 EBV BZLF1 RAKFKQLL effector T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-B*08:01 B2M MHCI -6131 chip0423_185061 11.26 8.62 Chip2 T1D_6 T1D TGTGCAGCAAGCAAGATAGAGGAGGAGGTGCTGACGGACTCACCTTT CAASKIEga?GGADGLTF TRAV23/DV6*01 TRAJ45*01 32.0 1950.0 CGTGCCAGCAGCTTGGGACAGGCCTACGAGCAGTACTTC RASSLGQAYEQYF TRBV7-8*01 TRBJ2-7*01 19.0 1319.0 CAASKIEga?GGADGLTF_RASSLGQAYEQYF 1 6021 EBNA3A-193-201 EBV 0.58 1022 EBNA3A-193-201 249 5772 10 EBV EBNA3A FLRGRAYGL effector memory T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-B*08:01 B2M MHCI -6132 chip0423_4757 11.28 6.8 Chip2 T1D_4 T1D TGTGCCAGCAGCTTAGGGCAAGCCTACGAGCAGTACTTC CASSLGQAYEQYF TRBV7-8*01 TRBJ2-7*01 41.0 1584.0 _CASSLGQAYEQYF 175 7262 EBNA3A-193-201 EBV 0.9 1022 NEG 270 6992 10 EBV EBNA3A FLRGRAYGL effector memory T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-B*08:01 B2M MHCI -6133 chip0423_494534 11.22 6.88 Chip2 T1D_6 T1D TGTGCCAGCAGCTCCAGGACCGGGACAAAAAACACTGAAGCTTTCTTT CASSSRTGTKNTEAFF TRBV7-2*01 TRBJ1-1*01 49.0 1664.0 _CASSSRTGTKNTEAFF 2 6398 NP140-148 FLU 0.89 102 NP140-148 223 6175 10 InfluenzaA NP HSNLNDATY effector memory T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*01:01 B2M MHCI -6134 chip0423_774576 13.18 8.01 Chip2 T1D_4 T1D TGTGCCAGCAGCTTAGCGGTCGGAGAAGGGCCCCAGCATTTT CASSLAVGEGPQHF TRBV7-9*01 TRBJ1-5*01 93.0 4200.0 _CASSLAVGEGPQHF 113 3185 BZLF1-190-197 EBV 0.92 2156 BZLF1-190-197 272 2913 10 EBV BZLF1 RAKFKQLL effector memory T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-B*08:01 B2M MHCI -6135 chip0423_315622 12.56 7.72 Chip2 T1D_6 T1D TGCAGCGCCGGCAGGGACGGGACTAATGAAAAACTGTTTTTT CSAGRDGTNEKLFF TRBV29-1*01 TRBJ1-4*01 123.0 5845.0 _CSAGRDGTNEKLFF 159 3410 EBV-BLMF1 EBV 0.57 2531 NEG 226 3184 10 EBV BLMF1 GLCTLVAML effector memory T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*02:01 B2M MHCI -6136 chip0423_176156 8.62 8.41 Chip2 T1D_4 T1D TGTGCCAGCAGCTTAACGGTTCTGGCAGGTCCAAACACTGAAGCTTTCTTT CASSLTVLAGPNTEAFF TRBV7-3*01 TRBJ1-1*01 43.0 1097.0 _CASSLTVLAGPNTEAFF 32 7459 BZLF1-190-197 EBV 0.88 2156 BZLF1-190-197 203 7256 8 EBV BZLF1 RAKFKQLL effector memory T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-B*08:01 B2M MHCI -6137 chip0423_253676 11.03 6.71 Chip2 T1D_4 T1D _ 6746 6682 EBV-LMP2A EBV 0.7 700 NEG 246 6436 10 EBV LMP2A CLGGLLTMV effector memory T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*02:01 B2M MHCI -6138 chip0423_844886 9.78 7.41 Chip2 T1D_4 T1D TGTGCCAGCAGCCAAGTCAACAACCCGGGGGATGGCTACACCTTC CASSQVNNPGDGYTF TRBV14*01 TRBJ1-2*01 12.0 410.0 _CASSQVNNPGDGYTF 94 4973 EBNA3A-158-166 EBV 0.52 444 NEG 216 4757 10 EBV EBNA3A QAKWRLQTL effector memory T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-B*08:01 B2M MHCI -6139 chip0423_315143 9.87 7.04 Chip2 T1D_4 T1D TGCGCCAGCCGCTTGGAGGGACGGGCCAGCTCCTACGAGCAGTACTTC CASRLEGRASSYEQYF TRBV5-1*01 TRBJ2-7*01 2.0 141.0 _CASRLEGRASSYEQYF 1 7624 EBV-LMP2A EBV 0.92 700 EBV-LMP2A 199 7425 10 EBV LMP2A CLGGLLTMV effector memory T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*02:01 B2M MHCI -6140 chip0423_107302 12.42 9.04 Chip2 T1D_4 T1D TGTGACAGCAGCTTAAAGGTCGGAGAAGGGCCCCAGCATTTT CDSSLKVGEGPQHF TRBV7-9*01 TRBJ1-5*01 2.0 49.0 _CDSSLKVGEGPQHF 1 3436 BZLF1-190-197 EBV 0.65 2156 BZLF1-190-197 255 3181 10 EBV BZLF1 RAKFKQLL effector memory T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-B*08:01 B2M MHCI -6141 chip0423_303362 13.3 6.82 Chip2 T1D_6 T1D TGCATCCTCCCACTTGCTGGTGGTACTAGCTATGGAAAGCTGACATTT CILPLAGGTSYGKLTF TRAV26-2*01 TRAJ52*01 45.0 1806.0 TGTGCCAGCAGCTTGGGACAGGCCTACGAGCAGTACTTC CASSLGQAYEQYF TRBV7-8*01 TRBJ2-7*01 39.0 2593.0 CILPLAGGTSYGKLTF_CASSLGQAYEQYF 308 3951 EBNA3A-193-201 EBV 0.94 1022 EBNA3A-193-201 267 3684 10 EBV EBNA3A FLRGRAYGL effector memory T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-B*08:01 B2M MHCI -6142 chip0423_38485 -1.27 9.43 Chip2 T1D_5 T1D TGCAGTGCTAGAGATCTCGCAGGGGCGCTGGTGCACAATGAGCAGTTCTTC CSARDLAGALVHNEQFF TRBV20-1*01 TRBJ2-1*01 36.0 1724.0 _CSARDLAGALVHNEQFF 1 9379 ZNT8-YAY-8 ZNT8 0.76 54 NEG 219 9160 3 HomoSapiens ZNT8 YAYAKWKL Naive T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-B*08:01 B2M MHCI -6143 chip0423_617852 7.97 7.76 Chip2 T1D_5 T1D _ 6746 4432 BZLF1-190-197 EBV 0.5 2156 NEG 262 4170 8 EBV BZLF1 RAKFKQLL effector memory T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-B*08:01 B2M MHCI -6144 chip0423_483277 9.23 9.03 Chip2 T1D_5 T1D TGTGCAGCAAGGGAAACCTCCTACGACAAGGTGATATTT CAARETSYDKVIF TRAV13-1*01 TRAJ50*01 30.0 1993.0 TGTGCCAGCAGTGCATCGGACAGGGGTGAAGCTTTCTTT CASSASDRGEAFF TRBV12-3*01,TRBV12-4*01 TRBJ1-1*01 27.0 1011.0 CAARETSYDKVIF_CASSASDRGEAFF 1 6156 BZLF1-190-197 EBV 0.41 2156 BZLF1-190-197 238 5918 8 EBV BZLF1 RAKFKQLL effector memory T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-B*08:01 B2M MHCI -6145 chip0423_87610 -1.46 9.14 Chip2 T1D_5 T1D TGTGCCAGCAGCGGGCCGGGTCGCTCCGTGGGGACTGAAGCTTTCTTT CASSGPGRSVGTEAFF TRBV7-9*01 TRBJ1-1*01 39.0 1699.0 _CASSGPGRSVGTEAFF 1 8301 Nef13-20 HIV 0.46 19 NEG 217 8084 3 HIV-1 Nef WPTVRERM Naive T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-B*08:01 B2M MHCI -6146 chip0423_833915 12.33 7.16 Chip2 T1D_5 T1D _ 6746 3399 BZLF1-190-197 EBV 0.88 2156 BZLF1-190-197 238 3161 10 EBV BZLF1 RAKFKQLL effector memory T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-B*08:01 B2M MHCI -6147 chip0423_723920 6.38 11.43 Chip2 T1D_6 T1D TGTGTTGTGAGTGACCGCAACTTCAACAAATTTTACTTT CVVSDRNFNKFYF TRAV8-2*01 TRAJ21*01 40.0 2043.0 TGTGCCATCAGTGAGTCTCTAGGAAGGGACGAGCAGTACTTC CAISESLGRDEQYF TRBV10-3*01 TRBJ2-7*01 17.0 899.0 CVVSDRNFNKFYF_CAISESLGRDEQYF 2 8912 NP44-52 FLU 0.84 474 NP44-52 219 8693 7 InfluenzaA NP CTELKLSDY transitional T cells between effector and memory populations PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*01:01 B2M MHCI -6148 chip0423_76756 -1.21 7.38 Chip2 T1D_6 T1D TGTGTGGTGTTTCTAGGTAACCAGTTCTATTTT CVVFLGNQFYF TRAV12-1*01 TRAJ49*01 10.0 1031.0 TGCAGTGCCCGGCGGTACACTGAAGCTTTCTTT CSARRYTEAFF TRBV20-1*01 TRBJ1-1*01 49.0 2093.0 CVVFLGNQFYF_CSARRYTEAFF 1 7084 IAPP-ILK-8 IAPP 0.51 20 IAPP-ILK-8 226 6858 3 HomoSapiens IAPP ILKLQVFL Naive T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-B*08:01 B2M MHCI -6149 chip0423_368461 13.0 13.3 Chip2 T1D_4 T1D TGCATCGTCAGAGTCGTGTGTACGGCACTGCCAGTCAACTCACCTTT CIVRVVCac?GTASQLTF TRAV26-1*01 TRAJ44*01 29.0 2057.0 TGTGCCAGCAGCTTAGCGGTCGGAGAAGGGCCCCAGCATTTT CASSLAVGEGPQHF TRBV7-9*01 TRBJ1-5*01 47.0 1868.0 CIVRVVCac?GTASQLTF_CASSLAVGEGPQHF 2 2284 BZLF1-190-197 EBV 0.92 2156 NEG 216 2068 11 EBV BZLF1 RAKFKQLL effector T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-B*08:01 B2M MHCI -6150 chip0423_216207 -0.77 8.87 Chip2 T1D_6 T1D TGTGCCGTCTCGTGGGGCTTT CAVSWGF TRAV12-2*01 TRAJ37*01 4.0 24.0 TGTGCCAGCAGTTTAAGCCCGGGGGACACCGGGGAGCTGTTTTTT CASSLSPGDTGELFF TRBV12-3*01,TRBV12-4*01 TRBJ2-2*01 10.0 525.0 CAVSWGF_CASSLSPGDTGELFF 1 6852 PGT-178 PGT 0.8 1480 PGT-178 220 6632 4 HomoSapiens PGT LLAGIGTVPI Naive T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*02:01 B2M MHCI -6151 chip0423_868973 6.2 12.86 Chip2 T1D_4 T1D TGCATCCTGAGGGGCGAGCGCATGGATAGCAACTATCAGTTAATCTGG CILRGERMDSNYQLIW TRAV26-2*01 TRAJ33*01 124.0 3941.0 TGTGCCAGTAGTGTCTTCGGGGGGTGGGACACTGAAGCTTTCTTT CASSVFGGWDTEAFF TRBV19*01 TRBJ1-1*01 22.0 654.0 CILRGERMDSNYQLIW_CASSVFGGWDTEAFF 1 4419 M1 FLU 0.67 1250 NEG 196 4223 7 InfluenzaA M1 GILGFVFTL transitional T cells between effector and memory populations PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*02:01 B2M MHCI -6152 chip0423_878398 12.44 10.49 Chip2 T1D_6 T1D TGTGCAGCAAGCAAGATAGAGGAGGAGGTGCTGACGGACTCACCTTT CAASKIEga?GGADGLTF TRAV23/DV6*01 TRAJ45*01 47.0 1972.0 TGTGCCAGCAGCTTGGGACAGGCCTACGAGCAGTACTTC CASSLGQAYEQYF TRBV7-8*01 TRBJ2-7*01 60.0 3489.0 CAASKIEga?GGADGLTF_CASSLGQAYEQYF 8 4453 EBNA3A-193-201 EBV 0.69 1022 NEG 233 4220 9 EBV EBNA3A FLRGRAYGL effector memory T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-B*08:01 B2M MHCI -6153 chip0423_198294 14.66 10.68 Chip2 T1D_5 T1D TGTGCAGCGGCGGAAACCTCCTACGACAAGGTGATATTT CAAAETSYDKVIF TRAV13-1*01 TRAJ50*01 17.0 1998.0 TGTGCCAGCCAACTAGCGGGAGGCACCGGGGAGCTGTTTTTT CASQLAGGTGELFF TRBV24-1*01 TRBJ2-2*01 22.0 1232.0 CAAAETSYDKVIF_CASQLAGGTGELFF 131 3121 BZLF1-190-197 EBV 0.62 2156 NEG 228 2893 12 EBV BZLF1 RAKFKQLL effector T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-B*08:01 B2M MHCI -6154 chip0423_42631 10.51 7.17 Chip2 T1D_4 T1D TGTGCCGGTACTAACACCGACAAGCTCATCTTT CAGTNTDKLIF TRAV27*01 TRAJ34*01 28.0 3365.0 TGTGCCAGCAGCTCGACAGGGGGCGGGGATCAGCCCCAGCATTTT CASSSTGGGDQPQHF TRBV7-9*01 TRBJ1-5*01 29.0 979.0 CAGTNTDKLIF_CASSSTGGGDQPQHF 1 7339 BZLF1-190-197 EBV 0.66 2156 BZLF1-190-197 262 7077 10 EBV BZLF1 RAKFKQLL effector memory T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-B*08:01 B2M MHCI -6155 chip0423_795153 11.24 6.8 Chip2 T1D_6 T1D TGTGCCATCGGTTCCCGGGGGGGCCGCTATGGCTACACCTTC CAIGSRGGRYGYTF TRBV6-5*01 TRBJ1-2*01 19.0 1167.0 _CAIGSRGGRYGYTF 1 7358 EBV-LMP2-FLY EBV 0.56 355 EBV-LMP2-FLY 247 7111 10 EBV LMP2 FLYALALLL effector memory T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*02:01 B2M MHCI -6156 chip0423_522013 12.56 7.39 Chip2 T1D_4 T1D TGTGCAGCAAGTGAGGACGCCAGACTCATGTTT CAASEDARLMF TRAV13-1*01 TRAJ31*01 5.0 403.0 TGTGCCAGCAGCTTCCCTTTTCAGAGCTATGGCTACACCTTC CASSFPFQSYGYTF TRBV7-9*01 TRBJ1-2*01 33.0 2142.0 CAASEDARLMF_CASSFPFQSYGYTF 2 3792 BZLF1-190-197 EBV 0.95 2156 BZLF1-190-197 237 3555 10 EBV BZLF1 RAKFKQLL effector memory T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-B*08:01 B2M MHCI -6157 chip0423_247335 16.01 10.45 Chip2 T1D_5 T1D TGTGCAGCAACGGAAACCTCCTACGACAAGGTGATATTC CAATETSYDKVIF TRAV13-1*01 TRAJ50*01 31.0 3103.0 TGTGCCAGCAGTCCCCCGGGGAGAAATGAAAAACTGTTTTTT CASSPPGRNEKLFF TRBV12-3*01,TRBV12-4*01 TRBJ1-4*01 96.0 4339.0 CAATETSYDKVIF_CASSPPGRNEKLFF 34 3336 BZLF1-190-197 EBV 0.73 2156 NEG 229 3107 12 EBV BZLF1 RAKFKQLL effector T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-B*08:01 B2M MHCI -6158 chip0423_129376 12.88 12.81 Chip2 T1D_4 T1D TGTGCCAGCAGCTTAGCGGTCGGAGAAGGGCCCCAGCATTTT CASSLAVGEGPQHF TRBV7-9*01 TRBJ1-5*01 46.0 1547.0 _CASSLAVGEGPQHF 113 1956 BZLF1-190-197 EBV 0.52 2156 NEG 207 1749 11 EBV BZLF1 RAKFKQLL effector T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-B*08:01 B2M MHCI -6159 chip0423_747526 14.15 9.98 Chip2 T1D_4 T1D TGCATCGTCAGAGAGGGAGGAGGTGCTGACGGACTCACCTTT CIVREGGGADGLTF TRAV26-1*01 TRAJ45*01 30.0 1988.0 TGTGCCAGCAGCTTAGCGGTCGGAGAAGGGCCCCAGCATTTT CASSLAVGEGPQHF TRBV7-9*01 TRBJ1-5*01 64.0 2432.0 CIVREGGGADGLTF_CASSLAVGEGPQHF 68 3673 BZLF1-190-197 EBV 0.85 2156 BZLF1-190-197 235 3438 12 EBV BZLF1 RAKFKQLL effector T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-B*08:01 B2M MHCI -6160 chip0423_731105 7.47 10.39 Chip2 T1D_6 T1D TGTGCCAGCAGCTTGGGACAGGCCTACGAGCAGTACTTC CASSLGQAYEQYF TRBV7-8*01 TRBJ2-7*01 4.0 119.0 _CASSLGQAYEQYF 175 8930 EBNA3A-193-201 EBV 0.7 1022 EBNA3A-193-201 224 8706 7 EBV EBNA3A FLRGRAYGL transitional T cells between effector and memory populations PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-B*08:01 B2M MHCI -6161 chip0423_649087 8.84 8.09 Chip2 T1D_5 T1D TGTGCAGCAAGTGAAACCTCCTACGACAAGGTGATATTT CAASETSYDKVIF TRAV13-1*01 TRAJ50*01 28.0 2551.0 TGTGCCAGTCTACAGGGGGGCAAAGAAAAACTGTTTTTT CASLQGGKEKLFF TRBV12-3*01,TRBV12-4*01 TRBJ1-4*01 37.0 863.0 CAASETSYDKVIF_CASLQGGKEKLFF 2 7223 BZLF1-190-197 EBV 0.4 2156 NEG 209 7014 8 EBV BZLF1 RAKFKQLL effector memory T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-B*08:01 B2M MHCI -6162 chip0423_106500 10.79 7.85 Chip2 T1D_4 T1D TGCATCGTCAGAGAGGGAGGAGGTGCTGACGGACTCACCTTT CIVREGGGADGLTF TRAV26-1*01 TRAJ45*01 15.0 824.0 TGTGCCAGCAGCTTAGCGGTCGGAGAAGGGCCCCAGCATTTT CASSLAVGEGPQHF TRBV7-9*01 TRBJ1-5*01 25.0 1264.0 CIVREGGGADGLTF_CASSLAVGEGPQHF 68 4935 BZLF1-190-197 EBV 0.79 2156 BZLF1-190-197 232 4703 10 EBV BZLF1 RAKFKQLL effector memory T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-B*08:01 B2M MHCI -6163 chip0423_582303 8.81 11.38 Chip2 T1D_5 T1D TGTGCAGCGGCGGAAACCTCCTACGACAAGGTGATATTT CAAAETSYDKVIF TRAV13-1*01 TRAJ50*01 1.0 13.0 TGTGCCAGCCAACTAGCGGGAGGCACCGGGGAGCTGTTTTTT CASQLAGGTGELFF TRBV24-1*01 TRBJ2-2*01 20.0 1291.0 CAAAETSYDKVIF_CASQLAGGTGELFF 131 3995 BZLF1-190-197 EBV 0.75 2156 NEG 221 3774 9 EBV BZLF1 RAKFKQLL effector memory T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-B*08:01 B2M MHCI -6164 chip0423_648731 7.22 9.52 Chip2 T1D_5 T1D TGTGCAATGGGCGCGGGCGCTGGTGGCGGCTTCAAAACTATCTTT CAMGAGAGGGFKTIF TRAV14/DV4*01 TRAJ9*01 8.0 170.0 TGTGCCAGCTGTGTGTTCGGGGGGGCTCCTTATGGCTACACCTTC CASCVFGGAPYGYTF TRBV2*01 TRBJ1-2*01 31.0 724.0 CAMGAGAGGGFKTIF_CASCVFGGAPYGYTF 1 7870 BZLF1-190-197 EBV 1.0 2156 NEG 209 7661 7 EBV BZLF1 RAKFKQLL transitional T cells between effector and memory populations PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-B*08:01 B2M MHCI -6165 chip0423_76634 7.18 12.67 Chip2 T1D_4 T1D TGTGCTTCTGGTTCTGCAAGGCAACTGACCTTT CASGSARQLTF TRAV12-1*01 TRAJ22*01 6.0 837.0 CASGSARQLTF_ 1 5032 PGT-178 PGT 0.67 1480 NEG 196 4836 7 HomoSapiens PGT LLAGIGTVPI transitional T cells between effector and memory populations PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*02:01 B2M MHCI -6166 chip0423_339921 6.32 10.14 Chip2 T1D_6 T1D TGCGCCAGCAGTGACATTAGGGAGGGGCAGGGTGAAGCTTTCTTT CASSDIREGQGEAFF TRBV10-2*01 TRBJ1-1*01 8.0 170.0 _CASSDIREGQGEAFF 37 10735 EBNA3A-158-166 EBV 0.91 444 EBNA3A-158-166 224 10511 6 EBV EBNA3A QAKWRLQTL central memory T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-B*08:01 B2M MHCI -6167 chip0423_184464 8.45 8.26 Chip2 T1D_4 T1D TGTGCTCTCGTGAATTATGGAGGAAGCCAAGGAAATCTCATCTTT CALVNYGGSQGNLIF TRAV19*01 TRAJ42*01 45.0 1987.0 TGTGCCGTCTGGAGGGACGGAGCCTACGAGCAGTACTTC CAVWRDGAYEQYF TRBV28*01 TRBJ2-7*01 61.0 4629.0 CALVNYGGSQGNLIF_CAVWRDGAYEQYF 13 9905 EBV-LMP1-1 EBV 0.55 237 NEG 272 9633 8 EBV LMP1 YLLEMLWRL effector memory T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*02:01 B2M MHCI -6168 chip0423_804088 15.95 9.75 Chip2 T1D_4 T1D TGTGCCAGCAGCTTAGCGGTCGGAGAAGGGCCCCAGCATTTT CASSLAVGEGPQHF TRBV7-9*01 TRBJ1-5*01 151.0 6481.0 _CASSLAVGEGPQHF 113 2960 BZLF1-190-197 EBV 0.6 2156 NEG 234 2726 12 EBV BZLF1 RAKFKQLL effector T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-B*08:01 B2M MHCI -6169 chip0423_679113 12.43 6.54 Chip2 T1D_5 T1D TGTGCCAGCACCCACCCCCAGGATGTGAACACCGGGGAGCTGTTTTTT CASTHPQDVNTGELFF TRBV7-9*01 TRBJ2-2*01 61.0 2304.0 _CASTHPQDVNTGELFF 5 4416 BZLF1-190-197 EBV 0.67 2156 NEG 213 4203 10 EBV BZLF1 RAKFKQLL effector memory T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-B*08:01 B2M MHCI -6170 chip0423_343963 13.96 8.13 Chip2 T1D_4 T1D TGCATCGTCAGAGAGGGAGGAGGTGCTGACGGACTCACCTTT CIVREGGGADGLTF TRAV26-1*01 TRAJ45*01 54.0 2222.0 TGCATCGTCAGAGTCGTGTGTACGGCACTGCCAGTAAACTCACCTTT CIVRVVCac?GTASKLTF TRAV26-1*01 TRAJ44*01 45.0 1972.0 0.38 TGTGCCAGCAGCTTAGCGGTCGGAGAAGGGCCCCAGCATTTT CASSLAVGEGPQHF TRBV7-9*01 TRBJ1-5*01 70.0 2392.0 CIVREGGGADGLTF_CASSLAVGEGPQHF 68 3779 BZLF1-190-197 EBV 0.94 2156 BZLF1-190-197 243 3536 10 EBV BZLF1 RAKFKQLL effector memory T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-B*08:01 B2M MHCI -6171 chip0423_5069 12.93 7.96 Chip2 T1D_4 T1D TGCATCCTCCCGTTGGCTGGTGGTACTAGCTATGGAAAGCTGACATTT CILPLAGGTSYGKLTF TRAV26-2*01 TRAJ52*01 72.0 2966.0 TGTGCCAGCAGCCAAGGACAGGCCTACGAGCAGTACTTC CASSQGQAYEQYF TRBV7-8*01 TRBJ2-7*01 49.0 2285.0 CILPLAGGTSYGKLTF_CASSQGQAYEQYF 3 4329 EBNA3A-193-201 EBV 0.71 1022 EBNA3A-193-201 252 4077 10 EBV EBNA3A FLRGRAYGL effector memory T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-B*08:01 B2M MHCI -6172 chip0423_441676 14.7 11.12 Chip2 T1D_5 T1D TGTGCAGGAATTTTGGGGTACACCGGTAACCAGTCCTATTTT CAGILGYTGNQSYF TRAV13-1*01 TRAJ49*01 84.0 4009.0 TGTGCCAGCAGCCCCCGTGGGGACAGGGAAAATTCACCCCTCCACTTT CASSPRGDRENSPLHF TRBV7-9*01 TRBJ1-6*01 37.0 1466.0 CAGILGYTGNQSYF_CASSPRGDRENSPLHF 1 3111 NP140-148 FLU 0.41 102 NEG 229 2882 12 InfluenzaA NP HSNLNDATY effector T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*01:01 B2M MHCI -6173 chip0423_285127 16.11 11.25 Chip2 T1D_5 T1D TGTGCCAGCCAACTAGCGGGAGGCACCGGGGAGCTGTTTTTT CASQLAGGTGELFF TRBV24-1*01 TRBJ2-2*01 12.0 765.0 _CASQLAGGTGELFF 69 2674 BZLF1-190-197 EBV 0.67 2156 NEG 230 2444 12 EBV BZLF1 RAKFKQLL effector T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-B*08:01 B2M MHCI -6174 chip0423_242063 11.68 9.49 Chip2 T1D_4 T1D TGTGCTGTGAGTGATGGAGAAGGAGCCCAGAAGCTGGTATTT CAVSDGEGAQKLVF TRAV8-6*01 TRAJ54*01 71.0 3458.0 TGTGCCAGCAGCCTAACGGTTCTGGCAGGTCCAAACACTGAAGCTTTCTTT CASSLTVLAGPNTEAFF TRBV7-3*01 TRBJ1-1*01 5.0 204.0 CAVSDGEGAQKLVF_CASSLTVLAGPNTEAFF 44 4009 BZLF1-190-197 EBV 0.7 2156 BZLF1-190-197 202 3807 10 EBV BZLF1 RAKFKQLL effector memory T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-B*08:01 B2M MHCI -6175 chip0423_93697 15.32 10.68 Chip2 T1D_5 T1D TGTGCCAGCAGTCCCCCGGGGAGAAATGAAAAACTGTTTTTT CASSPPGRNEKLFF TRAV9-2*01 TRAJ5*01 2.0 9.0 TGTGCCAGCAGTCCCCCGGGGAGAAATGAAAAACTGTTTTTT CASSPPGRNEKLFF TRBV12-3*01,TRBV12-4*01 TRBJ1-4*01 56.0 2014.0 CASSPPGRNEKLFF_CASSPPGRNEKLFF 11 2967 BZLF1-190-197 EBV 0.67 2156 NEG 206 2761 12 EBV BZLF1 RAKFKQLL effector T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-B*08:01 B2M MHCI -6176 chip0423_805781 8.91 9.27 Chip2 T1D_4 T1D TGTGCTGTGAGTGATGGAGAAGGAGCCCAGAAGCTGGTATTT CAVSDGEGAQKLVF TRAV8-6*01 TRAJ54*01 54.0 2264.0 TGTGCCAGCAGCTTAACGGTTCTGGCAGGTCCAAACACTGAAGCTTTCTTT CASSLTVLAGPNTEAFF TRBV7-3*01 TRBJ1-1*01 13.0 334.0 CAVSDGEGAQKLVF_CASSLTVLAGPNTEAFF 44 5280 BZLF1-190-197 EBV 0.95 2156 BZLF1-190-197 223 5057 8 EBV BZLF1 RAKFKQLL effector memory T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-B*08:01 B2M MHCI -6177 chip0423_198071 13.17 13.55 Chip2 T1D_5 T1D TGTGCAGAGATGGAAACCTCCTACGCCAAGGTGATATTT CAEMETSYAKVIF TRAV13-2*01 TRAJ50*01 21.0 2037.0 TGTGCCAGCACCCACCCCCAGGATGTGAACACCGGGGAGCTGTTTTTT CASTHPQDVNTGELFF TRBV7-9*01 TRBJ2-2*01 177.0 6784.0 CAEMETSYAKVIF_CASTHPQDVNTGELFF 1 1171 BZLF1-190-197 EBV 1.0 2156 NEG 212 959 11 EBV BZLF1 RAKFKQLL effector T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-B*08:01 B2M MHCI -6178 chip0423_32009 8.07 8.61 Chip2 T1D_5 T1D TGTGCCAGCAGCTTACTGGGGCCGGTCGATAATTCACCCCTCCACTTT CASSLLGPVDNSPLHF TRAV20*01 TRAJ11*01 2.0 8.0 TGTGCCAGCAGCTTACTGGGGACGGTCGATAATTCACCCCTCCACTTT CASSLLGTVDNSPLHF TRBV7-9*01 TRBJ1-6*01 75.0 2452.0 CASSLLGPVDNSPLHF_CASSLLGTVDNSPLHF 1 8424 BZLF1-190-197 EBV 0.49 2156 BZLF1-190-197 193 8231 8 EBV BZLF1 RAKFKQLL effector memory T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-B*08:01 B2M MHCI -6179 chip0423_731999 12.06 8.1 Chip2 T1D_4 T1D TGCATCGTCAGAGAGGGAGGAGGTGCTGACGGACTCACCTTT CIVREGGGADGLTF TRAV26-1*01 TRAJ45*01 31.0 2015.0 TGTGCCAGCAGCTTAGCGGTCGGAGAAGGGCCCCAGCATTTT CASSLAVGEGPQHF TRBV7-9*01 TRBJ1-5*01 52.0 2442.0 CIVREGGGADGLTF_CASSLAVGEGPQHF 68 3491 BZLF1-190-197 EBV 0.88 2156 BZLF1-190-197 225 3266 10 EBV BZLF1 RAKFKQLL effector memory T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-B*08:01 B2M MHCI -6180 chip0423_719003 13.45 9.61 Chip2 T1D_6 T1D TGCATCCTCCCACTTGCTGGTGGTACTAGCTATGGAAAGCTGACATTT CILPLAGGTSYGKLTF TRAV26-2*01 TRAJ52*01 32.0 1434.0 TGTGCCAGCAGCTTGGGACAGGCCTACGAGCAGTACTTC CASSLGQAYEQYF TRBV7-8*01 TRBJ2-7*01 14.0 768.0 CILPLAGGTSYGKLTF_CASSLGQAYEQYF 308 3976 EBNA3A-193-201 EBV 1.0 1022 NEG 229 3747 10 EBV EBNA3A FLRGRAYGL effector memory T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-B*08:01 B2M MHCI -6181 chip0423_550812 10.55 9.18 Chip2 T1D_6 T1D TGTGCCAGCAGCTTGGGACAGGCCTACGAGCAGTACTTC CASSLGQAYEQYF TRBV7-8*01 TRBJ2-7*01 79.0 3910.0 _CASSLGQAYEQYF 175 5771 EBNA3A-193-201 EBV 0.94 1022 EBNA3A-193-201 216 5555 10 EBV EBNA3A FLRGRAYGL effector memory T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-B*08:01 B2M MHCI -6182 chip0423_752850 11.52 9.87 Chip2 T1D_6 T1D TGCATCCTCCCACTTGCTGGTGGTACTAGCTATGGAAAGCTGACATTT CILPLAGGTSYGKLTF TRAV26-2*01 TRAJ52*01 72.0 3946.0 TGTGCCAGCAGCTTGGGACAGGCCTACGAGCAGTACTTC CASSLGQAYEQYF TRBV7-8*01 TRBJ2-7*01 40.0 1848.0 CILPLAGGTSYGKLTF_CASSLGQAYEQYF 308 5322 EBNA3A-193-201 EBV 0.68 1022 NEG 221 5101 9 EBV EBNA3A FLRGRAYGL effector memory T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-B*08:01 B2M MHCI -6183 chip0423_704440 13.93 9.76 Chip2 T1D_5 T1D TGTGCAGCAAGTGAAACCTCCTACGACAAGGTGATATTT CAASETSYDKVIF TRAV13-1*01 TRAJ50*01 42.0 2544.0 TGTGCAGCAAAGTGAAACCTCCTACGACAAGGTGATATTT CAAK*Nct??ccYDKVIF TRAV13-1*01 TRAJ50*01 35.0 1977.0 0.36 TGTGCCAGCAGCTTACTGGGTAGTCGGGACACTGAAGCTTTCTTT CASSLLGSRDTEAFF TRBV7-9*01 TRBJ1-1*01 120.0 4380.0 CAASETSYDKVIF_CASSLLGSRDTEAFF 1 7211 BZLF1-190-197 EBV 0.83 2156 NEG 208 7003 12 EBV BZLF1 RAKFKQLL effector T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-B*08:01 B2M MHCI -6184 chip0423_609792 6.3 12.62 Chip2 T1D_6 T1D TGTGCTGTGAGAGAATATGGAAACAAACTGGTCTTT CAVREYGNKLVF TRAV1-2*01 TRAJ47*01 9.0 636.0 CAVREYGNKLVF_ 2 7400 NP380-388 FLU 0.61 60 NEG 222 7178 7 InfluenzaA NP ELRSRYWAI transitional T cells between effector and memory populations PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-B*08:01 B2M MHCI -6185 chip0423_609232 -3.04 8.04 Chip2 T1D_5 T1D TGTGCCAGCAGCCCGAAAGCAGGGGGATTGAGTGATACGCAGTATTTT CASSPKAGGLSDTQYF TRBV3-1*01 TRBJ2-3*01 24.0 818.0 _CASSPKAGGLSDTQYF 1 6978 ZNT8-YAK-9 ZNT8 0.4 59 NEG 171 6807 2 HomoSapiens ZNT8 YAKWKLCSA Naive T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-B*08:01 B2M MHCI -6186 chip0423_14768 14.23 9.93 Chip2 T1D_5 T1D TGCGCCAGCAGCCTCAGTTCGGGGGGCCGTGGCGAGCAGTACTTC CASSLSSGGRGEQYF TRBV4-1*01 TRBJ2-7*01 4.0 251.0 _CASSLSSGGRGEQYF 11 5273 BZLF1-190-197 EBV 0.59 2156 NEG 191 5082 12 EBV BZLF1 RAKFKQLL effector T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-B*08:01 B2M MHCI -6187 chip0423_48576 6.65 10.21 Chip2 T1D_6 T1D TGCATCCTCCCACTTGCTGGTGGTACTAGCTATGGAAAGCTGACATTT CILPLAGGTSYGKLTF TRAV26-2*01 TRAJ52*01 19.0 683.0 TGTGCCAGCAGCTTGGGACAGGCCTACGAGCAGTACTTC CASSLGQAYEQYF TRBV7-8*01 TRBJ2-7*01 8.0 497.0 CILPLAGGTSYGKLTF_CASSLGQAYEQYF 308 7676 EBNA3A-193-201 EBV 0.88 1022 NEG 242 7434 6 EBV EBNA3A FLRGRAYGL central memory T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-B*08:01 B2M MHCI -6188 chip0423_36668 9.73 10.25 Chip2 T1D_4 T1D TGTGCAGCAAGTGAAACCTCCTACGACAAGGTGATATTT CAASETSYDKVIF TRAV13-1*01 TRAJ50*01 38.0 2154.0 TGTGCCAGCAGCTCGACCCAGTCCGGCGATCAGCCCCAGCATTTT CASSSTQSGDQPQHF TRBV7-9*01 TRBJ1-5*01 7.0 122.0 CAASETSYDKVIF_CASSSTQSGDQPQHF 3 4746 BZLF1-190-197 EBV 0.67 2156 NEG 250 4496 9 EBV BZLF1 RAKFKQLL effector memory T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-B*08:01 B2M MHCI -6189 chip0423_349609 13.5 11.1 Chip2 T1D_4 T1D _ 6746 5211 EBV-BRLF1 EBV 0.9 1264 EBV-BRLF1 182 5029 9 EBV BRLF1 YVLDHLIVV effector memory T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*02:01 B2M MHCI -6190 chip0423_713033 14.02 8.26 Chip2 T1D_4 T1D TGCATCGGCAAAGAGGGAGGAGCTGCTGACGGACTCACCTTT CIGKEGGAADGLTF TRAV26-1*01 TRAJ45*01 8.0 488.0 TGTGCCAGCAGCTTAGCGGTCGGAGAAGGGCCCCAGCATTTT CASSLAVGEGPQHF TRBV7-9*01 TRBJ1-5*01 34.0 1452.0 CIGKEGGAADGLTF_CASSLAVGEGPQHF 1 3072 BZLF1-190-197 EBV 0.82 2156 BZLF1-190-197 203 2869 10 EBV BZLF1 RAKFKQLL effector memory T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-B*08:01 B2M MHCI -6191 chip0423_551549 13.55 8.69 Chip2 T1D_4 T1D TGTGCCAGCAGCTTAGCGGTCGGAGAAGGGCCCCAGCATTTT CASSLAVGEGPQHF TRBV7-9*01 TRBJ1-5*01 13.0 526.0 _CASSLAVGEGPQHF 113 3778 BZLF1-190-197 EBV 0.94 2156 BZLF1-190-197 209 3569 10 EBV BZLF1 RAKFKQLL effector memory T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-B*08:01 B2M MHCI -6192 chip0423_747934 7.08 12.56 Chip2 T1D_6 T1D TGTGCCAGCAGCTTAGCGGGTCGTGAGGGTACGCAGTATTTT CASSLAGREGTQYF TRBV11-3*01 TRBJ2-3*01 19.0 968.0 _CASSLAGREGTQYF 13 5841 NP380-388 FLU 0.88 60 NP380-388 216 5625 7 InfluenzaA NP ELRSRYWAI transitional T cells between effector and memory populations PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-B*08:01 B2M MHCI -6193 chip0423_439093 15.01 10.73 Chip2 T1D_5 T1D TGTGCAGCAACGGAAACCTCCTACGACAAGGTGATATTT CAATETSYDKVIF TRAV13-1*01 TRAJ50*01 32.0 2054.0 TGTGCCAGCAGCTTTTTAGGCCAGCACAGCACAGATACGCAGTATTTT CASSFLGQHSTDTQYF TRBV7-9*01 TRBJ2-3*01 59.0 2812.0 CAATETSYDKVIF_CASSFLGQHSTDTQYF 1 3355 BZLF1-190-197 EBV 0.62 2156 NEG 227 3128 12 EBV BZLF1 RAKFKQLL effector T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-B*08:01 B2M MHCI -6194 chip0423_407712 14.55 8.23 Chip2 T1D_5 T1D TGCATCTCTCGGGAAACCTCCTACGACAAGGTGATATTT CISRETSYDKVIF TRAV26-2*01 TRAJ50*01 44.0 3699.0 TGTGCCAGCAGTTTTACGGGGGACATGCTCCCTGAAGCTTTCTTT CASSFTGDMLPEAFF TRBV12-3*01,TRBV12-4*01 TRBJ1-1*01 27.0 1126.0 CISRETSYDKVIF_CASSFTGDMLPEAFF 1 2992 BZLF1-190-197 EBV 0.58 2156 NEG 208 2784 12 EBV BZLF1 RAKFKQLL effector T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-B*08:01 B2M MHCI -6195 chip0423_315071 9.41 11.05 Chip2 T1D_6 T1D TGTGCTTATTCGGGAGGCGGATCTGAAAAGCTGGTCTTT CAYSGGGSEKLVF TRAV38-1*01 TRAJ57*01 4.0 298.0 TGTGCCAGCAGCCAAGTTCGCGGCGGGTACGAGCAGTACTTC CASSQVRGGYEQYF TRBV3-1*01 TRBJ2-7*01 13.0 670.0 CAYSGGGSEKLVF_CASSQVRGGYEQYF 2 6898 BZLF1-190-197 EBV 0.56 2156 NEG 234 6664 9 EBV BZLF1 RAKFKQLL effector memory T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-B*08:01 B2M MHCI -6196 chip0423_236030 11.05 6.8 Chip2 T1D_4 T1D CTGTGCCAGCAGCCAAGTCAACAACCCGGGGGATGGCTACACCTTC LCQQPSQca??acPGDGYTF TRBV14*01 TRBJ1-2*01 1.0 41.0 _LCQQPSQca??acPGDGYTF 2 5551 EBNA3A-158-166 EBV 0.56 444 EBNA3A-158-166 293 5258 10 EBV EBNA3A QAKWRLQTL effector memory T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-B*08:01 B2M MHCI -6197 chip0423_461173 6.4 14.4 Chip2 T1D_6 T1D TGCGGCACAGAGACGGATAATAATGCAGGCAACATGCCCACCTTT CGTETDNNAGNMPTF TRAV30*01 TRAJ39*01 15.0 393.0 TGTGCCAGTAGTATATATAGCATCAATGAGCAGTTCTTC CASSIYSINEQFF TRBV19*01 TRBJ2-1*01 99.0 3739.0 CGTETDNNAGNMPTF_CASSIYSINEQFF 1 4327 M1 FLU 0.4 1250 NEG 297 4030 7 InfluenzaA M1 GILGFVFTL transitional T cells between effector and memory populations PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*02:01 B2M MHCI -6198 chip0423_223943 15.21 8.96 Chip2 T1D_6 T1D TGCATCCTCCCACTTGCTGGTGGTACTAGCTATGGAAAGCTGACATTT CILPLAGGTSYGKLTF TRAV26-2*01 TRAJ52*01 73.0 3188.0 TGTGCCAGCAGCTTGGGACAGGCCTACGAGCAGTACTTC CASSLGQAYEQYF TRBV7-8*01 TRBJ2-7*01 16.0 690.0 CILPLAGGTSYGKLTF_CASSLGQAYEQYF 308 5339 EBNA3A-193-201 EBV 0.88 1022 NEG 243 5096 12 EBV EBNA3A FLRGRAYGL effector T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-B*08:01 B2M MHCI -6199 chip0423_35383 7.39 9.91 Chip2 T1D_6 T1D TGCGCCAGCAGTGACATTAGGGAGGGGCAGGGTGAAGCTTTCTTT CASSDIREGQGEAFF TRBV10-2*01 TRBJ1-1*01 4.0 73.0 _CASSDIREGQGEAFF 37 10781 EBNA3A-158-166 EBV 0.87 444 NEG 245 10536 7 EBV EBNA3A QAKWRLQTL transitional T cells between effector and memory populations PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-B*08:01 B2M MHCI -6200 chip0423_706700 -2.17 10.27 Chip2 T1D_6 T1D TGTGCAATGAGCCTATCTAACTTTGGAAATGAGAAATTAACCTTT CAMSLSNFGNEKLTF TRAV12-3*01 TRAJ48*01 32.0 687.0 TGCGCCAGCAGTTATGAAACCGACAGGGGAGGTAGCGAGCAGTACTTC CASSYETDRGGSEQYF TRBV5-1*01 TRBJ2-7*01 51.0 1828.0 CAMSLSNFGNEKLTF_CASSYETDRGGSEQYF 1 5572 PGT-178 PGT 0.85 1480 PGT-178 184 5388 3 HomoSapiens PGT LLAGIGTVPI Naive T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*02:01 B2M MHCI -6201 chip0423_798041 -2.78 12.35 Chip2 T1D_4 T1D TGTGCAATGAGCCTATCTAACTTTGGAAATGAGAAATTAACCTTT CAMSLSNFGNEKLTF TRAV12-3*01 TRAJ48*01 95.0 3450.0 TGTGCCAGCAGTGAATATACTACCTCTGACAGGGTACGAGAGAACACCGGGGAGCTGTTTTTT CASSEYTTSDRVRENTGELFF TRBV25-1*01 TRBJ2-2*01 85.0 1925.0 CAMSLSNFGNEKLTF_CASSEYTTSDRVRENTGELFF 1 4581 PGT-178 PGT 0.86 1480 PGT-178 185 4396 1 HomoSapiens PGT LLAGIGTVPI Naive T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*02:01 B2M MHCI -6202 chip0423_225617 7.54 10.09 Chip2 T1D_4 T1D TGTGCAGCAAGCGACCGCCTTCCAGGAGGAAGCTACATACCTACATTT CAASDRLPGGSYIPTF TRAV23/DV6*01 TRAJ6*01 13.0 287.0 TGCAGTGCTACTAACCAGTACGACGGACCCGACACTGAAGCTTTCTTT CSATNQYDGPDTEAFF TRBV20-1*01 TRBJ1-1*01 93.0 4701.0 CAASDRLPGGSYIPTF_CSATNQYDGPDTEAFF 21 7370 BZLF1-190-197 EBV 0.83 2156 NEG 201 7169 7 EBV BZLF1 RAKFKQLL transitional T cells between effector and memory populations PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-B*08:01 B2M MHCI -6203 chip0423_811324 10.4 10.27 Chip2 T1D_4 T1D TGTGCTGTGAGTGATGGAGAAGGAGCCCAGAAGCTGGTATTT CAVSDGEGAQKLVF TRAV8-6*01 TRAJ54*01 77.0 2726.0 TGTGCCAGCAGCTTAACGGTTCTGGCAGGTCCAAACACTGAAGCTTTCTTT CASSLTVLAGPNTEAFF TRBV7-3*01 TRBJ1-1*01 39.0 1012.0 CAVSDGEGAQKLVF_CASSLTVLAGPNTEAFF 44 5458 BZLF1-190-197 EBV 0.69 2156 BZLF1-190-197 239 5219 9 EBV BZLF1 RAKFKQLL effector memory T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-B*08:01 B2M MHCI -6204 chip0423_465416 -0.5 7.25 Chip2 T1D_5 T1D TGCAGTGCTAGATCTACGACCTATATGAACACTGAAGCTTTCTTT CSARSTTYMNTEAFF TRBV20-1*01 TRBJ1-1*01 58.0 1884.0 _CSARSTTYMNTEAFF 1 8463 G6PC2-YLK-8 IGRP 0.51 27 G6PC2-YLK-8 214 8249 3 HomoSapiens G6PC2 YLKTNLFL Naive T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-B*08:01 B2M MHCI -6205 chip0423_500119 8.52 11.46 Chip2 T1D_5 T1D TGTGCAGCGGCGGAAACCTCCTACGACAAGGTGATATTT CAAAETSYDKVIF TRAV13-1*01 TRAJ50*01 43.0 4092.0 CAAAETSYDKVIF_ 32 4009 BZLF1-190-197 EBV 0.83 2156 NEG 214 3795 7 EBV BZLF1 RAKFKQLL transitional T cells between effector and memory populations PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-B*08:01 B2M MHCI -6206 chip0423_665312 15.29 8.83 Chip2 T1D_4 T1D TGCATCGTCAGAGCGGGGGGAGGCGCTGACGGACTCACCTTT CIVRAGGGADGLTF TRAV26-1*01 TRAJ45*01 14.0 821.0 TGTGCCAGCAGCTTAGCGGTCGGAGAAGGGCCCCAGCATTTT CASSLAVGEGPQHF TRBV7-9*01 TRBJ1-5*01 10.0 283.0 CIVRAGGGADGLTF_CASSLAVGEGPQHF 1 4586 BZLF1-190-197 EBV 0.86 2156 BZLF1-190-197 270 4316 12 EBV BZLF1 RAKFKQLL effector T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-B*08:01 B2M MHCI -6207 chip0423_344393 8.72 10.54 Chip2 T1D_5 T1D TGTGCAGCAAGTGAGACCTCCTACGACAAGGTGATATCT CAASETSYDKVIS TRAV13-1*01 TRAJ50*01 60.0 4332.0 TGTGCCAGCAGCCCCCTGGGACAAAACACTGAAGCTTTCTTT CASSPLGQNTEAFF TRBV7-9*01 TRBJ1-1*01 73.0 2460.0 CAASETSYDKVIS_CASSPLGQNTEAFF 1 4336 BZLF1-190-197 EBV 0.5 2156 NEG 231 4105 8 EBV BZLF1 RAKFKQLL effector memory T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-B*08:01 B2M MHCI -6208 chip0423_566830 -1.76 7.19 Chip2 T1D_4 T1D TGTGCAGGGAATCCCGAGAACACCGGTAACCAGTTCTATTTT CAGNPENTGNQFYF TRAV25*01 TRAJ49*01 59.0 5193.0 TGTGCCTGGAGTCCTTCAGGCTTAGGGCAGCCCCAGCATTTT CAWSPSGLGQPQHF TRBV30*01 TRBJ1-5*01 16.0 920.0 CAGNPENTGNQFYF_CAWSPSGLGQPQHF 1 7291 PGT-178 PGT 0.62 1480 NEG 222 7069 3 HomoSapiens PGT LLAGIGTVPI Naive T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*02:01 B2M MHCI -6209 chip0423_136736 5.35 10.1 Chip2 healthy_3 healthy TGTGCCGTGACGGGAGGTGCTGACGGACTCACCTTT CAVTGGADGLTF TRAV12-2*01 TRAJ45*01 15.0 1531.0 TGTGCCAGCAGCGACAGCGGGATTGAGACCCAGTACTTC CASSDSGIETQYF TRBV5-4*01 TRBJ2-5*01 24.0 1432.0 CAVTGGADGLTF_CASSDSGIETQYF 1 5373 PGT-178 PGT 0.86 1480 NEG 194 5179 6 HomoSapiens PGT LLAGIGTVPI central memory T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*02:01 B2M MHCI -6210 chip0423_385140 10.68 7.35 Chip2 T1D_5 T1D TGTGCCAGCAGTTTCCCCCGCCGACAGGAGGTGACCGGGGAGCTGTTTTTT CASSFPRRQEVTGELFF TRBV12-3*01,TRBV12-4*01 TRBJ2-2*01 46.0 3517.0 _CASSFPRRQEVTGELFF 1 2047 BZLF1-190-197 EBV 0.58 2156 NEG 223 1824 10 EBV BZLF1 RAKFKQLL effector memory T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-B*08:01 B2M MHCI -6211 chip0423_334732 5.46 8.68 Chip2 T1D_4 T1D TGTGCAGCAAGCGCGGGACTATACTCTGGGGCTGGGCGTTACCAACTCACTTTC CAASAGLYSGAGRYQLTF TRAV29/DV5*01 TRAJ28*01 45.0 1480.0 TGTGCCAGCAGTTTGAACCCCGTTCTTCGGTTAGATACGCAGTATTTT CASSLNPVLRLDTQYF TRBV28*01 TRBJ2-3*01 91.0 4127.0 CAASAGLYSGAGRYQLTF_CASSLNPVLRLDTQYF 2 7632 EBNA3A-158-166 EBV 0.8 444 NEG 222 7410 6 EBV EBNA3A QAKWRLQTL central memory T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-B*08:01 B2M MHCI -6212 chip0423_651447 10.2 9.45 Chip2 T1D_4 T1D TGTGCCAGCAGCCAAGTCAACAACCCGGGGGATGGCTACACCTTC CASSQVNNPGDGYTF TRBV14*01 TRBJ1-2*01 20.0 507.0 _CASSQVNNPGDGYTF 94 7962 EBNA3A-158-166 EBV 0.85 444 EBNA3A-158-166 239 7723 9 EBV EBNA3A QAKWRLQTL effector memory T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-B*08:01 B2M MHCI -6213 chip0423_425750 14.55 9.68 Chip2 T1D_4 T1D TGCATCGTCAGAGAGGGAGGAGGTGCTGACGGACTCACCTTT CIVREGGGADGLTF TRAV26-1*01 TRAJ45*01 95.0 5702.0 TGTGCCAGCAGCTTAGCGGTCGGAGAAGGGCCCCAGCATTTT CASSLAVGEGPQHF TRBV7-9*01 TRBJ1-5*01 77.0 2941.0 CIVREGGGADGLTF_CASSLAVGEGPQHF 68 4252 BZLF1-190-197 EBV 0.78 2156 BZLF1-190-197 217 4035 12 EBV BZLF1 RAKFKQLL effector T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-B*08:01 B2M MHCI -6214 chip0423_160185 12.99 7.15 Chip2 T1D_5 T1D TGTGCAGCAACGGAAACCTCCTACGACAAGGTGATATTT CAATETSYDKVIF TRAV13-1*01 TRAJ50*01 63.0 3983.0 TGTGCCAGCAGCCCTCTTGGGAGCAATGAAAAACTGTTTTTT CASSPLGSNEKLFF TRBV7-9*01 TRBJ1-4*01 50.0 1266.0 CAATETSYDKVIF_CASSPLGSNEKLFF 25 3856 BZLF1-190-197 EBV 0.8 2156 NEG 224 3632 10 EBV BZLF1 RAKFKQLL effector memory T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-B*08:01 B2M MHCI -6215 chip0423_3948 6.49 12.58 Chip2 T1D_6 T1D TGTGCTGTGAGAGAATATGGAAACAAACTGGTCTTT CAVREYGNKLVF TRAV1-2*01 TRAJ47*01 8.0 392.0 TGTGCCAGCAGCTTAGCGGGTCGTGAGGGTACGCAGTATTTT CASSLAGREGTQYF TRBV11-3*01 TRBJ2-3*01 13.0 472.0 CAVREYGNKLVF_CASSLAGREGTQYF 7 6364 NP380-388 FLU 0.47 60 NP380-388 216 6148 7 InfluenzaA NP ELRSRYWAI transitional T cells between effector and memory populations PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-B*08:01 B2M MHCI -6216 chip0423_647503 14.16 10.57 Chip2 T1D_5 T1D TGTGCCAGCAGTTTTACAGGTAGCTCTGGAAACACCATATATTTT CASSFTGSSGNTIYF TRBV12-3*01,TRBV12-4*01 TRBJ1-3*01 32.0 904.0 _CASSFTGSSGNTIYF 7 4464 BZLF1-190-197 EBV 0.48 2156 NEG 207 4257 12 EBV BZLF1 RAKFKQLL effector T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-B*08:01 B2M MHCI -6217 chip0423_530068 9.52 8.35 Chip2 T1D_4 T1D TGTGCCAGCAGCTTAGCGGTCGGAGAAGGGCCCCAGCATTTT CASSLAVGEGPQHF TRBV7-9*01 TRBJ1-5*01 73.0 3631.0 _CASSLAVGEGPQHF 113 5617 BZLF1-190-197 EBV 0.93 2156 BZLF1-190-197 226 5391 8 EBV BZLF1 RAKFKQLL effector memory T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-B*08:01 B2M MHCI -6218 chip0423_71981 11.52 6.76 Chip2 T1D_4 T1D TGTGCTGTCAATTCAGGAAACACACCTCTTGTCTTT CAVNSGNTPLVF TRAV1-2*01 TRAJ29*01 33.0 2590.0 TGTGCCAGCAGCCCAGTCAACAACCCGGGGGATGGCTACACCTTC CASSPVNNPGDGYTF TRBV14*01 TRBJ1-2*01 7.0 159.0 CAVNSGNTPLVF_CASSPVNNPGDGYTF 1 5682 EBNA3A-158-166 EBV 0.75 444 NEG 231 5451 10 EBV EBNA3A QAKWRLQTL effector memory T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-B*08:01 B2M MHCI -6219 chip0423_435161 14.81 10.33 Chip2 T1D_5 T1D TGTGCAGCAACGTCCACCTCCTACGACAAGCTGATATTT CAATSTSYDKLIF TRAV13-1*01 TRAJ50*01 4.0 221.0 TGTGCCAGCAGCCTATTAGGAGTACGGGACAGGGAAAACGAGCAGTACTTC CASSLLGVRDRENEQYF TRBV11-1*01 TRBJ2-7*01 27.0 939.0 CAATSTSYDKLIF_CASSLLGVRDRENEQYF 1 2809 BZLF1-190-197 EBV 0.75 2156 NEG 222 2587 12 EBV BZLF1 RAKFKQLL effector T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-B*08:01 B2M MHCI -6220 chip0423_524527 14.12 10.05 Chip2 T1D_6 T1D TGTGCTACCGTCCCTGATGCTGGTGGTACTCGCTATGGCAAGCTGACATTT CATVPDAGGTRYGKLTF TRAV17*01 TRAJ52*01 8.0 247.0 TGTGCCAGCAGCGTTAGCGGGGCCCCCTACGAGCAGTACTTC CASSVSGAPYEQYF TRBV9*01 TRBJ2-7*01 18.0 1470.0 CATVPDAGGTRYGKLTF_CASSVSGAPYEQYF 1 5988 EBNA3A-193-201 EBV 0.5 1022 NEG 262 5726 12 EBV EBNA3A FLRGRAYGL effector T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-B*08:01 B2M MHCI -6221 chip0423_158110 14.03 12.8 Chip2 T1D_4 T1D TGTGCAGAGAGTATAGGGGATGACAAGATCATCTTT CAESIGDDKIIF TRAV5*01 TRAJ30*01 57.0 3870.0 TGCCTCGTGGGTGACATAAGGAACCTACAAATACATCTTT CLVGDIag??gaTYKYIF TRAV4*01 TRAJ40*01 42.0 1372.0 0.34 TGCGCCCGCCGCCGGGCGCAGGGCTCGAACTAATTCACCGCTCCACTTT CARRRAQG??tRTNSPLHF TRBV5-1*01 TRBJ1-6*01 3.0 66.0 CAESIGDDKIIF_CARRRAQG??tRTNSPLHF 1 2744 BZLF1-190-197 EBV 0.5 2156 NEG 243 2501 12 EBV BZLF1 RAKFKQLL effector T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-B*08:01 B2M MHCI -6222 chip0423_734293 10.31 6.93 Chip2 T1D_4 T1D TGCGCCGCCTCTGAAACCTCCTACGACAAGGTGATATTT CAASETSYDKVIF TRAV13-1*01 TRAJ50*01 7.0 305.0 TGTGCCAGCAGCTCGACAGGGGGCGGGGATCAGCCCCAGCATTTT CASSSTGGGDQPQHF TRBV7-9*01 TRBJ1-5*01 13.0 359.0 CAASETSYDKVIF_CASSSTGGGDQPQHF 9 5675 BZLF1-190-197 EBV 0.86 2156 NEG 267 5408 10 EBV BZLF1 RAKFKQLL effector memory T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-B*08:01 B2M MHCI -6223 chip0423_239853 9.95 9.74 Chip2 T1D_4 T1D TGTGCCAGCAGCCAAGTCAACAACCCGGGGGATGGCTACACCTTC CASSQVNNPGDGYTF TRBV14*01 TRBJ1-2*01 12.0 368.0 _CASSQVNNPGDGYTF 94 6042 EBNA3A-158-166 EBV 0.65 444 EBNA3A-158-166 201 5841 9 EBV EBNA3A QAKWRLQTL effector memory T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-B*08:01 B2M MHCI -6224 chip0423_407471 12.02 10.77 Chip2 T1D_5 T1D TGTGCCAGCAGCTTCCGCGGCCAGGGGCTCGGTGAGCAGTACTTC CASSFRGQGLGEQYF TRBV7-9*01 TRBJ2-7*01 7.0 387.0 _CASSFRGQGLGEQYF 1 4543 BZLF1-190-197 EBV 0.57 2156 NEG 206 4337 9 EBV BZLF1 RAKFKQLL effector memory T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-B*08:01 B2M MHCI -6225 chip0423_586408 13.73 9.94 Chip2 T1D_4 T1D TGCATCGTCAGACAGGGTGGCGCTGCTGACGGCCTCCCCTTT CIVRQGGAADGLPF TRAV26-1*01 TRAJ45*01 21.0 1329.0 TGTGCCAGCAGCTTAGCGGTCGGAGAAGGGCCCCAGCATTTT CASSLAVGEGPQHF TRBV7-9*01 TRBJ1-5*01 40.0 1721.0 CIVRQGGAADGLPF_CASSLAVGEGPQHF 1 3506 BZLF1-190-197 EBV 0.97 2156 BZLF1-190-197 220 3286 12 EBV BZLF1 RAKFKQLL effector T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-B*08:01 B2M MHCI -6226 chip0423_365287 12.51 10.64 Chip2 T1D_4 T1D TGCATCCTGGGAATGCCAGGAGGAGGTGCTGACGGACTCACCTTT CILGMPGGGADGLTF TRAV26-2*01 TRAJ45*01 46.0 3707.0 TGTGCCAGCAGTATGGGAAACGCGTTTGGAAAACTGTTTTTT CASSMGNAFGKLFF TRBV6-1*01 TRBJ1-4*01 43.0 790.0 CILGMPGGGADGLTF_CASSMGNAFGKLFF 2 5700 EBNA3A-193-201 EBV 0.56 1022 NEG 192 5508 9 EBV EBNA3A FLRGRAYGL effector memory T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-B*08:01 B2M MHCI -6227 chip0423_252135 10.73 8.79 Chip2 T1D_4 T1D TGCGCCAGCAGCTTGGAGCTGGGGCTTCCCTACGAGCAGTACTTC CASSLELGLPYEQYF TRBV5-1*01 TRBJ2-7*01 26.0 793.0 _CASSLELGLPYEQYF 8 5416 EBNA3A-158-166 EBV 0.83 444 NEG 210 5206 10 EBV EBNA3A QAKWRLQTL effector memory T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-B*08:01 B2M MHCI -6228 chip0423_126854 -0.21 6.54 Chip2 T1D_6 T1D CTGCGCTGTGAGACCTCCCGTGGAAAGCTTATCTTC LRCETSRGKLIF TRAV1-1*01 TRAJ23*01 5.0 462.0 TGTGCCACCAGTGATTCTCTGTACCAAGAGACCCAGTACTTC CATSDSLYQETQYF TRBV24-1*01 TRBJ2-5*01 9.0 867.0 LRCETSRGKLIF_CATSDSLYQETQYF 1 12054 ZNT8-173-181 ZNT8 0.41 27 NEG 223 11831 3 HomoSapiens ZNT8 IQATVMIIV Naive T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*02:01 B2M MHCI -6229 chip0423_169038 7.14 11.73 Chip2 T1D_6 T1D TGTGCCTCCCAAGGAGGAAGCCAAGGAAATCTCATCTTT CASQGGSQGNLIF TRAV20*01 TRAJ42*01 57.0 4185.0 TGTGCCAGCAGCTTAGGAGGACAGACAGAGACCCAGTACTTC CASSLGGQTETQYF TRBV13*01 TRBJ2-5*01 7.0 236.0 CASQGGSQGNLIF_CASSLGGQTETQYF 13 8042 ROTA-VP6 ROTA 0.54 47 ROTA-VP6 235 7807 7 RotavirusA VP6 TLLANVTAV transitional T cells between effector and memory populations PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*02:01 B2M MHCI -6230 chip0423_665594 14.13 7.65 Chip2 T1D_6 T1D TGCAGCGCCGGCAGGGACGGGACTAATGAAAAACTGTTTTTT CSAGRDGTNEKLFF TRBV29-1*01 TRBJ1-4*01 136.0 6967.0 _CSAGRDGTNEKLFF 159 5094 EBV-BLMF1 EBV 0.54 2531 NEG 263 4831 10 EBV BLMF1 GLCTLVAML effector memory T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*02:01 B2M MHCI -6231 chip0423_825880 11.9 7.67 Chip2 T1D_4 T1D TGTGCTGTGGGTGCTGGAGAAGGAGCCCCGAAGCTGGTATTT CAVGAGEGAPKLVF TRAV8-6*01 TRAJ54*01 9.0 146.0 TGTGCCAGCAGCTTAACGGTTCTGGCAGGTCCAAACACTGAAGCTTTCTTT CASSLTVLAGPNTEAFF TRBV7-3*01 TRBJ1-1*01 85.0 2859.0 CAVGAGEGAPKLVF_CASSLTVLAGPNTEAFF 1 4209 BZLF1-190-197 EBV 0.97 2156 BZLF1-190-197 197 4012 10 EBV BZLF1 RAKFKQLL effector memory T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-B*08:01 B2M MHCI -6232 chip0423_270423 15.71 9.13 Chip2 T1D_5 T1D TGTGCAGCAACGGAAACCTCCTACGACAAGGTGATATTT CAATETSYDKVIF TRAV13-1*01 TRAJ50*01 30.0 2813.0 TGTGCCAGCAGCCCTCTTGGGTGCAATGAAAAACTGTTTTTT CASSPLGCNEKLFF TRBV7-9*01 TRBJ1-4*01 85.0 2339.0 CAATETSYDKVIF_CASSPLGCNEKLFF 2 4074 BZLF1-190-197 EBV 0.78 2156 NEG 241 3833 12 EBV BZLF1 RAKFKQLL effector T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-B*08:01 B2M MHCI -6233 chip0423_193202 9.56 9.16 Chip2 T1D_4 T1D TGCATCGTCAGAGAGGGAGGAGGTGCTGACGGACTCACCTTT CIVREGGGADGLTF TRAV26-1*01 TRAJ45*01 54.0 3675.0 TGTGCCAGCAGCTTAGCGGTCGGAGAAGGGCCCCAGCATTTT CASSLAVGEGPQHF TRBV7-9*01 TRBJ1-5*01 25.0 935.0 CIVREGGGADGLTF_CASSLAVGEGPQHF 68 4874 BZLF1-190-197 EBV 0.91 2156 BZLF1-190-197 213 4661 8 EBV BZLF1 RAKFKQLL effector memory T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-B*08:01 B2M MHCI -6234 chip0423_636531 8.15 10.85 Chip2 T1D_5 T1D TGTGCAGCAACGGAGACCTCCTACGACAAGGTGATATTT CAATETSYDKVIF TRAV13-1*01 TRAJ50*01 28.0 1995.0 TGTGCCAGCAGCTCAGCTTCGAACACTGAAGCTTTCTTT CASSSASNTEAFF TRBV7-9*01 TRBJ1-1*01 28.0 1101.0 CAATETSYDKVIF_CASSSASNTEAFF 1 5852 BZLF1-190-197 EBV 0.48 2156 NEG 204 5648 7 EBV BZLF1 RAKFKQLL transitional T cells between effector and memory populations PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-B*08:01 B2M MHCI -6235 chip0423_617390 6.57 11.73 Chip2 T1D_6 T1D TGTGCAGCAGTGAACTCAAATTCCGGGTATGCACTCAACTTC CAAVNSNSGYALNF TRAV13-1*01 TRAJ41*01 9.0 296.0 CAAVNSNSGYALNF_ 2 6501 ROTA-VP6 ROTA 0.55 47 NEG 197 6304 7 RotavirusA VP6 TLLANVTAV transitional T cells between effector and memory populations PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*02:01 B2M MHCI -6236 chip0423_719247 7.04 10.24 Chip2 T1D_6 T1D TGCGCAGAGAATATCGAGGGAACTGCTCTGATCTTT CAENIEGTALIF TRAV13-2*01 TRAJ15*01 49.0 4229.0 TGCGCCAGCAGCCTCAGTTCGGGGGGCCGTGGCGAGCAGTACTTC CASSLSSGGRGEQYF TRBV4-1*01 TRBJ2-7*01 4.0 219.0 CAENIEGTALIF_CASSLSSGGRGEQYF 1 8737 IAPP-LNH-9 IAPP 0.64 15 IAPP-LNH-9 226 8511 7 HomoSapiens IAPP LNHLKATPI transitional T cells between effector and memory populations PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-B*08:01 B2M MHCI -6237 chip0423_488634 12.91 6.49 Chip2 T1D_4 T1D TGTGCTGTGAGTGATGGAGAAGGAGCCCAGAAGCTGGTATTT CAVSDGEGAQKLVF TRAV8-6*01 TRAJ54*01 73.0 3072.0 TGTGCCAGCAGCTTAACGGTTCTGGCAGGTCCAAACACTGACGCTTTCTTT CASSLTVLAGPNTDAFF TRBV7-3*01 TRBJ1-1*01 5.0 129.0 CAVSDGEGAQKLVF_CASSLTVLAGPNTDAFF 1 6897 BZLF1-190-197 EBV 0.61 2156 BZLF1-190-197 240 6657 10 EBV BZLF1 RAKFKQLL effector memory T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-B*08:01 B2M MHCI -6238 chip0423_331234 -0.42 9.23 Chip2 T1D_5 T1D TGTGCTACGGACGCCGGGGCCGGCAACATGCTCACCTTT CATDAGAGNMLTF TRAV17*01 TRAJ39*01 35.0 2007.0 CATDAGAGNMLTF_ 1 8285 GFAP-ALD-9 GFAP 0.63 11 GFAP-ALD-9 187 8098 3 HomoSapiens GFAP ALDIEIATY Naive T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*01:01 B2M MHCI -6239 chip0423_35134 6.45 11.06 Chip2 T1D_6 T1D TGTGCTCTGAGTGAGGCGGGGACTCCATCAGGAGGAAGCTACATACCTACATTT CALSEAGTPSGGSYIPTF TRAV19*01 TRAJ6*01 1.0 12.0 TGTGCCAGCAGTTACGGGGGGTACGAGCAGTACTTC CASSYGGYEQYF TRBV6-5*01 TRBJ2-7*01 1.0 30.0 CALSEAGTPSGGSYIPTF_CASSYGGYEQYF 1 9863 M1 FLU 0.48 1250 M1 216 9647 7 InfluenzaA M1 GILGFVFTL transitional T cells between effector and memory populations PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*02:01 B2M MHCI -6240 chip0423_228435 8.26 10.19 Chip2 T1D_6 T1D TGCATCCTCCCGCTTGCTGTTGGTACTAGCTATGGAAAGCCGACATTT CILPLAVGTSYGKPTF TRAV26-2*01 TRAJ52*01 12.0 363.0 TGTGCCAGCAGCTTGGGACAGGCCTACGAGCAGTACTTC CASSLGQAYEQYF TRBV7-8*01 TRBJ2-7*01 2.0 33.0 CILPLAVGTSYGKPTF_CASSLGQAYEQYF 1 7316 EBNA3A-193-201 EBV 0.9 1022 EBNA3A-193-201 214 7102 8 EBV EBNA3A FLRGRAYGL effector memory T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-B*08:01 B2M MHCI -6241 chip0423_573721 14.71 8.51 Chip2 T1D_4 T1D TGTGCTGTGAGTGATGGAGAAGGAGCCCAGAAGCTGGTATTT CAVSDGEGAQKLVF TRAV8-6*01 TRAJ54*01 2.0 40.0 CAVSDGEGAQKLVF_ 12 3366 BZLF1-190-197 EBV 0.84 2156 BZLF1-190-197 212 3154 12 EBV BZLF1 RAKFKQLL effector T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-B*08:01 B2M MHCI -6242 chip0423_348593 11.2 6.28 Chip2 T1D_4 T1D TGTGCTGTCAATTCAGGAAACACACCTCTTGTCTTT CAVNSGNTPLVF TRAV1-2*01 TRAJ29*01 1.0 31.0 TGTGCCAGCAGCCAAGTCAACAACCCGGGGGATGGCTACACCTTC CASSQVNNPGDGYTF TRBV14*01 TRBJ1-2*01 12.0 263.0 CAVNSGNTPLVF_CASSQVNNPGDGYTF 31 7174 EBNA3A-158-166 EBV 0.56 444 NEG 248 6926 10 EBV EBNA3A QAKWRLQTL effector memory T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-B*08:01 B2M MHCI -6243 chip0423_88799 8.99 7.54 Chip2 T1D_5 T1D TGTGCAGCAAGGGAAACCTCCTACGACAAGGTGATATTT CAARETSYDKVIF TRAV13-1*01 TRAJ50*01 3.0 193.0 CAARETSYDKVIF_ 15 7261 BZLF1-190-197 EBV 0.68 2156 BZLF1-190-197 221 7040 8 EBV BZLF1 RAKFKQLL effector memory T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-B*08:01 B2M MHCI -6244 chip0423_572683 10.93 9.03 Chip2 T1D_5 T1D TGTGCAGCAACGGAAACCTCCTACGACAAGGTGATATTT CAATETSYDKVIF TRAV13-1*01 TRAJ50*01 18.0 938.0 TGCATCCTCCCCCTTGCTGGTGGTCCTTGCTATGGAAAGCTGACATTT CILPLAGGPCYGKLTF TRAV26-2*01 TRAJ52*01 15.0 302.0 0.38 TGTGCCAGCAGCCCTCTTGGGAGCAATGAAAAACTGTTTTTT CASSPLGSNEKLFF TRBV7-9*01 TRBJ1-4*01 43.0 1085.0 CAATETSYDKVIF_CASSPLGSNEKLFF 25 5101 BZLF1-190-197 EBV 0.8 2156 NEG 178 4923 10 EBV BZLF1 RAKFKQLL effector memory T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-B*08:01 B2M MHCI -6245 chip0423_572039 10.65 6.45 Chip2 T1D_4 T1D TGTGCCTATGGTCAGAACTTTGTCTTT CAYGQNFVF TRAV8-3*01 TRAJ26*01 21.0 3544.0 TGTGCCAGCAGCGCAGGCAGCGATTATGGCTACACCTTC CASSAGSDYGYTF TRBV9*01 TRBJ1-2*01 90.0 3845.0 CAYGQNFVF_CASSAGSDYGYTF 1 10522 EBV-LMP1-1 EBV 0.5 237 NEG 261 10261 10 EBV LMP1 YLLEMLWRL effector memory T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*02:01 B2M MHCI -6246 chip0423_410399 9.93 6.93 Chip2 T1D_5 T1D TGCATCGTCGAAGAAACCTCCTACGACAAGGTGATATTT CIVEETSYDKVIF TRAV26-1*01 TRAJ50*01 23.0 1636.0 CIVEETSYDKVIF_ 1 6304 BZLF1-190-197 EBV 0.45 2156 NEG 213 6091 10 EBV BZLF1 RAKFKQLL effector memory T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-B*08:01 B2M MHCI -6247 chip0423_110127 -3.09 8.19 Chip2 T1D_6 T1D TGTGCCAGCAGTTTAGGAGATTCACCCCTCCACTTT CASSLGDSPLHF TRAV14/DV4*01 TRAJ11*01 2.0 10.0 TGTGCCAGCAGTTTAGGAGATTCACCCCTCCACTTT CASSLGDSPLHF TRBV12-3*01,TRBV12-4*01 TRBJ1-6*01 34.0 1901.0 CASSLGDSPLHF_CASSLGDSPLHF 1 6430 PGT-178 PGT 0.67 1480 PGT-178 213 6217 3 HomoSapiens PGT LLAGIGTVPI Naive T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*02:01 B2M MHCI -6248 chip0423_780449 6.96 10.01 Chip2 T1D_6 T1D TGCGCCAGCAGTGACATTAGGGAGGGGCAGGGTGAAGCTTTCTTT CASSDIREGQGEAFF TRBV10-2*01 TRBJ1-1*01 40.0 1025.0 _CASSDIREGQGEAFF 37 8762 EBNA3A-158-166 EBV 0.71 444 NEG 212 8550 6 EBV EBNA3A QAKWRLQTL central memory T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-B*08:01 B2M MHCI -6249 chip0423_184501 -0.34 7.35 Chip2 T1D_5 T1D TGTGCAGAGCCTACCGCATCAGGAGGAAGCTACATACCTACATTT CAEPTASGGSYIPTF TRAV5*01 TRAJ6*01 23.0 1423.0 CAEPTASGGSYIPTF_ 1 7315 EBNA3A-193-201 EBV 1.0 1022 NEG 194 7121 3 EBV EBNA3A FLRGRAYGL Naive T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-B*08:01 B2M MHCI -6250 chip0423_244633 15.93 9.92 Chip2 T1D_6 T1D TGTGCCAGCAGCTTGGGACAGGCCTACGAGCAGTACTTC CASSLGQAYEQYF TRBV7-8*01 TRBJ2-7*01 23.0 1353.0 _CASSLGQAYEQYF 175 5731 EBNA3A-193-201 EBV 0.42 1022 NEG 233 5498 12 EBV EBNA3A FLRGRAYGL effector T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-B*08:01 B2M MHCI -6251 chip0423_631304 6.38 12.6 Chip2 T1D_6 T1D TGTGCTGTGAGAGAATATGGAAACAAACTGGTCTTT CAVREYGNKLVF TRAV1-2*01 TRAJ47*01 20.0 1117.0 TGCAGTGCTAGATCTACGACCTATATGAACACTGAAGCTTTCTTT CSARSTTYMNTEAFF TRBV20-1*01 TRBJ1-1*01 2.0 49.0 CAVREYGNKLVF_CSARSTTYMNTEAFF 1 6233 NP380-388 FLU 0.56 60 NP380-388 222 6011 7 InfluenzaA NP ELRSRYWAI transitional T cells between effector and memory populations PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-B*08:01 B2M MHCI -6252 chip0423_860139 8.94 8.88 Chip2 T1D_5 T1D TGTGCAGCAAGGGAAACCTCCTACGACAAGGTGATATTT CAARETSYDKVIF TRAV13-1*01 TRAJ50*01 43.0 2799.0 CAARETSYDKVIF_ 15 6673 BZLF1-190-197 EBV 0.48 2156 NEG 225 6448 8 EBV BZLF1 RAKFKQLL effector memory T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-B*08:01 B2M MHCI -6253 chip0423_533847 9.58 8.08 Chip2 T1D_4 T1D TGCATCGTCAGAGAGGGAGGAGGTGCTGACGGACTCACCTTT CIVREGGGADGLTF TRAV26-1*01 TRAJ45*01 7.0 205.0 TGTGCCAGCAGCTTAGCGGTCGGAGAAGGGCCCCAGCATCTT CASSLAVGEGPQHL TRBV7-9*01 TRBJ1-5*01 45.0 2393.0 CIVREGGGADGLTF_CASSLAVGEGPQHL 1 4124 BZLF1-190-197 EBV 0.97 2156 BZLF1-190-197 228 3896 8 EBV BZLF1 RAKFKQLL effector memory T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-B*08:01 B2M MHCI -6254 chip0423_235175 12.54 10.71 Chip2 T1D_4 T1D TGTGCTGTGAGTGATCGCGAAGGCGCCCGGAAGCTGGTACTC CAVSDREGARKLVL TRAV8-6*01 TRAJ54*01 32.0 2048.0 TGTGCCAGCAGCTTAACGGTTCTGGCAGGTCCAAACACTGAAGCTTTCTTT CASSLTVLAGPNTEAFF TRBV7-3*01 TRBJ1-1*01 11.0 262.0 CAVSDREGARKLVL_CASSLTVLAGPNTEAFF 1 2686 BZLF1-190-197 EBV 0.85 2156 BZLF1-190-197 223 2463 9 EBV BZLF1 RAKFKQLL effector memory T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-B*08:01 B2M MHCI -6255 chip0423_428746 10.65 6.51 Chip2 T1D_4 T1D TGCATCCTGCCATTGGAGGGTGGTGCTCGCTATGGCGCGCTGCCATTT CILPLEGGARYGALPF TRAV26-2*01 TRAJ52*01 10.0 203.0 TGTGCCAGCAGCTCGGGACAAGCCTACGAGCAGTACTTC CASSSGQAYEQYF TRBV7-8*01 TRBJ2-7*01 14.0 545.0 CILPLEGGARYGALPF_CASSSGQAYEQYF 1 5912 EBNA3A-193-201 EBV 0.71 1022 EBNA3A-193-201 238 5674 10 EBV EBNA3A FLRGRAYGL effector memory T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-B*08:01 B2M MHCI -6256 chip0423_735305 5.17 9.92 Chip2 T1D_4 T1D TGTGCCGTGGCCGAGACCTCAAATACTGGAGGCTTCAAAACTATCTTT CAVAETSNTGGFKTIF TRAV12-2*01 TRAJ9*01 83.0 3594.0 TGTGCCAGCAGCCTGATGGCGGGGAGCACAGATACGCAGTATTTT CASSLMAGSTDTQYF TRBV27*01 TRBJ2-3*01 63.0 3262.0 CAVAETSNTGGFKTIF_CASSLMAGSTDTQYF 3 6137 EBV-LMP1-2 EBV 1.0 41 NEG 223 5914 6 EBV LMP1 YLQQNWWTL central memory T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*02:01 B2M MHCI -6257 chip0423_324315 -1.18 9.67 Chip2 T1D_5 T1D TGTGCCGTGAGCCGGGGTTACCAGAAAGTTACCTTT CAVSRGYQKVTF TRAV12-2*01 TRAJ13*01 1.0 16.0 TGTGCCACCGAAAACAGGGTTTCCTACGAGCAGTACTTC CATENRVSYEQYF TRBV11-3*01 TRBJ2-7*01 14.0 364.0 CAVSRGYQKVTF_CATENRVSYEQYF 1 7546 NP44-52 FLU 0.5 474 NEG 172 7374 3 InfluenzaA NP CTELKLSDY Naive T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*01:01 B2M MHCI -6258 chip0423_251681 13.35 8.17 Chip2 T1D_6 T1D GGCGTCCTCGCCCTTGCTGGCGGTGCTAGCTATGGAACGCTGACAGTT GVLALAGGASYGTLTV TRAV26-2*01 TRAJ52*01 2.0 54.0 TGTGCCAGCAGCTTGGGACAGGCCTACGAGCAGTACTTC CASSLGQAYEQYF TRBV7-8*01 TRBJ2-7*01 21.0 970.0 GVLALAGGASYGTLTV_CASSLGQAYEQYF 1 3112 EBNA3A-193-201 EBV 0.95 1022 EBNA3A-193-201 278 2834 10 EBV EBNA3A FLRGRAYGL effector memory T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-B*08:01 B2M MHCI -6259 chip0423_649338 8.76 8.73 Chip2 T1D_4 T1D TGTGCCAGCAGCTTAGCGGTCGGAGAAGGGCCCCAGCATTTT CASSLAVGEGPQHF TRBV7-9*01 TRBJ1-5*01 80.0 2748.0 _CASSLAVGEGPQHF 113 7742 BZLF1-190-197 EBV 0.83 2156 BZLF1-190-197 212 7530 8 EBV BZLF1 RAKFKQLL effector memory T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-B*08:01 B2M MHCI -6260 chip0423_562460 15.59 8.93 Chip2 T1D_5 T1D TGTGCCAGCAGCTCATTGGGGGGGCCTGGAAACACCATATATTTT CASSSLGGPGNTIYF TRBV7-9*01 TRBJ1-3*01 14.0 551.0 _CASSSLGGPGNTIYF 1 2963 BZLF1-190-197 EBV 0.5 2156 NEG 231 2732 12 EBV BZLF1 RAKFKQLL effector T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-B*08:01 B2M MHCI -6261 chip0423_191697 -0.77 6.87 Chip2 T1D_6 T1D TGTGCTCTGAGTGAGGCGACCGGTGCAGACCCCTCGGCCTTT CALSEATGADPSAF TRAV9-2*01 TRAJ27*01 6.0 135.0 TGTGCCAGCAGCTTGGGACAGGGTTGGGTGACCCAGTACTTC CASSLGQGWVTQYF TRBV5-5*01 TRBJ2-5*01 71.0 4366.0 CALSEATGADPSAF_CASSLGQGWVTQYF 1 7529 G6PC2-YLK-8 IGRP 0.73 27 G6PC2-YLK-8 235 7294 3 HomoSapiens G6PC2 YLKTNLFL Naive T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-B*08:01 B2M MHCI -6262 chip0423_232439 11.33 11.06 Chip2 T1D_5 T1D _ 6746 3681 BZLF1-190-197 EBV 0.86 2156 NEG 255 3426 9 EBV BZLF1 RAKFKQLL effector memory T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-B*08:01 B2M MHCI -6263 chip0423_132835 12.09 6.91 Chip2 T1D_6 T1D TGCATCCTCCCACTTGCTGGTGGTACTAGCTATGGAAAGCTGACATTT CILPLAGGTSYGKLTF TRAV26-2*01 TRAJ52*01 35.0 1152.0 TGTGCCAGCAGCTTGGGACAGGCCTACGAGCAGTACTTC CASSLGQAYEQYF TRBV7-8*01 TRBJ2-7*01 23.0 863.0 CILPLAGGTSYGKLTF_CASSLGQAYEQYF 308 6083 EBNA3A-193-201 EBV 0.92 1022 EBNA3A-193-201 251 5832 10 EBV EBNA3A FLRGRAYGL effector memory T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-B*08:01 B2M MHCI -6264 chip0423_91140 6.69 11.46 Chip2 T1D_6 T1D TGTGTTGTTATAGACTATGGTCAGAATTTTGTCTTT CVVIDYGQNFVF TRAV8-2*01 TRAJ26*01 48.0 4514.0 TGTGCCAGCAGCGCCTGGGGGGGGGCGGACCCCACAGATACGCAGTATTTT CASSAWGGADPTDTQYF TRBV9*01 TRBJ2-3*01 7.0 278.0 CVVIDYGQNFVF_CASSAWGGADPTDTQYF 4 6927 GFAP-LRL-8 GFAP 0.46 18 GFAP-LRL-8 235 6692 7 HomoSapiens GFAP LRLRLDQL transitional T cells between effector and memory populations PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-B*08:01 B2M MHCI -6265 chip0423_873031 6.34 11.66 Chip2 T1D_6 T1D TGTGCCGGGGGCCCCGATGGCCAGACGCCGCTCTTT CAGGPDGQTPLF TRAV12-2*01 TRAJ16*01 6.0 672.0 TGTGCCAGTAGTATCCGGGCGGCATACGAGCAGTACTTC CASSIRAAYEQYF TRBV19*01 TRBJ2-7*01 26.0 1685.0 CAGGPDGQTPLF_CASSIRAAYEQYF 1 6740 M1 FLU 0.67 1250 NEG 236 6504 7 InfluenzaA M1 GILGFVFTL transitional T cells between effector and memory populations PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*02:01 B2M MHCI -6266 chip0423_823655 -1.0 6.76 Chip2 T1D_6 T1D TGTGCAATGAGTCGGTCTAACTTTGGAAATGAGAAATTAACCTTT CAMSRSNFGNEKLTF TRAV12-3*01 TRAJ48*01 66.0 3530.0 CAMSRSNFGNEKLTF_ 5 8340 PGT-178 PGT 0.93 1480 PGT-178 210 8130 3 HomoSapiens PGT LLAGIGTVPI Naive T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*02:01 B2M MHCI -6267 chip0423_652065 -1.9 7.41 Chip2 T1D_6 T1D TGTGCAATGAGCTTATCTAACTTTGGAAATGAGAAATTAACCTTT CAMSLSNFGNEKLTF TRAV12-3*01 TRAJ48*01 133.0 4708.0 TGTGCCAGCAGCGTGGGCGGGACAGGGGACCATGGCTACACCTTC CASSVGGTGDHGYTF TRBV9*01 TRBJ1-2*01 8.0 232.0 CAMSLSNFGNEKLTF_CASSVGGTGDHGYTF 1 8035 PGT-178 PGT 0.64 1480 NEG 178 7857 3 HomoSapiens PGT LLAGIGTVPI Naive T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*02:01 B2M MHCI -6268 chip0423_666761 10.27 6.69 Chip2 tet_neg TGTGCCTCCCGGAGGAACACCGACAAGCTCATCTTT CASRRNTDKLIF TRAV12-2*01 TRAJ34*01 5.0 496.0 TGTGCCTCATCTTCTGGAAACACCATATATTTT CASSSGNTIYF TRBV6-1*01 TRBJ1-3*01 16.0 710.0 CASRRNTDKLIF_CASSSGNTIYF 1 8300 G6PC2-LTS-10 IGRP 0.73 59 NEG 249 8051 10 HomoSapiens G6PC2 LTSLTILQLY effector memory T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*01:01 B2M MHCI -6269 chip0423_638525 9.57 7.26 Chip2 T1D_4 T1D TGTGCTGTGAGTGATGGAGAAGGAGCCCAGAAGCTGGTATTT CAVSDGEGAQKLVF TRAV8-6*01 TRAJ54*01 1.0 13.0 TGTGCCAGCAGCTTAACGGTTCTGGCAGGTCCAAACACTGAAGCCTTCTTT CASSLTVLAGPNTEAFF TRBV7-3*01 TRBJ1-1*01 14.0 375.0 CAVSDGEGAQKLVF_CASSLTVLAGPNTEAFF 44 5500 BZLF1-190-197 EBV 0.75 2156 BZLF1-190-197 231 5269 8 EBV BZLF1 RAKFKQLL effector memory T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-B*08:01 B2M MHCI -6270 chip0423_827937 6.58 11.47 Chip2 T1D_6 T1D TGTGCCGTGACCCCGAATTCAGGAAACACACCTCTTGTCTTT CAVTPNSGNTPLVF TRAV12-2*01 TRAJ29*01 10.0 380.0 TGCAGTGCTCCGCCGGTCCCCGGTAATGAAAAACTGTTTTTT CSAPPVPGNEKLFF TRBV20-1*01 TRBJ1-4*01 31.0 1987.0 CAVTPNSGNTPLVF_CSAPPVPGNEKLFF 1 6473 ROTA-VP6 ROTA 0.6 47 ROTA-VP6 208 6265 7 RotavirusA VP6 TLLANVTAV transitional T cells between effector and memory populations PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*02:01 B2M MHCI -6271 chip0423_102238 12.78 7.25 Chip2 T1D_4 T1D TGTGCCAGCAGCCAAGTCAACAACCCGGGGGATGGCTACACCTTC CASSQVNNPGDGYTF TRBV14*01 TRBJ1-2*01 10.0 272.0 _CASSQVNNPGDGYTF 94 4720 EBNA3A-158-166 EBV 0.72 444 EBNA3A-158-166 240 4480 10 EBV EBNA3A QAKWRLQTL effector memory T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-B*08:01 B2M MHCI -6272 chip0423_771453 14.09 8.14 Chip2 T1D_6 T1D TGCATCCTCCCACTTGCTGGTGGTACTAGCTATGGAAAGCTGACATTT CILPLAGGTSYGKLTF TRAV26-2*01 TRAJ52*01 52.0 2434.0 TGTGCCAGCAGCTTGGGACAGGCCTACGAGCAGTACTTC CASSLGQAYEQYF TRBV7-8*01 TRBJ2-7*01 39.0 1965.0 CILPLAGGTSYGKLTF_CASSLGQAYEQYF 308 3393 EBNA3A-193-201 EBV 1.0 1022 EBNA3A-193-201 226 3167 10 EBV EBNA3A FLRGRAYGL effector memory T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-B*08:01 B2M MHCI -6273 chip0423_768697 13.09 6.94 Chip2 T1D_4 T1D TGTGCCAGCAGCTTAGCGGTCGGAGAAGGGCCCCAGCATTTT CASSLAVGEGPQHF TRBV7-9*01 TRBJ1-5*01 67.0 2511.0 _CASSLAVGEGPQHF 113 5080 BZLF1-190-197 EBV 0.81 2156 BZLF1-190-197 226 4854 10 EBV BZLF1 RAKFKQLL effector memory T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-B*08:01 B2M MHCI -6274 chip0423_663120 16.55 10.58 Chip2 T1D_5 T1D TGTGCAGTTACGGAAACCTCCTACGACAAGGTGATATTT CAVTETSYDKVIF TRAV13-1*01 TRAJ50*01 31.0 2068.0 TGTGCCAGCAGCTTAGTAGGTGACAGCACTAACTATGGCTACACCTTC CASSLVGDSTNYGYTF TRBV7-9*01 TRBJ1-2*01 16.0 680.0 CAVTETSYDKVIF_CASSLVGDSTNYGYTF 1 2566 BZLF1-190-197 EBV 0.53 2156 NEG 219 2347 12 EBV BZLF1 RAKFKQLL effector T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-B*08:01 B2M MHCI -6275 chip0423_82889 11.77 7.17 Chip2 T1D_6 T1D TGCATCCTCCCACTTGCTGGTGGTACTAGCTATGGAAAGCTGACATTT CILPLAGGTSYGKLTF TRAV26-2*01 TRAJ52*01 20.0 721.0 TGTGCCAGCAGCTTGGGACAGGCCTACGAGCAGTACTTC CASSLGQAYEQYF TRBV7-8*01 TRBJ2-7*01 12.0 767.0 CILPLAGGTSYGKLTF_CASSLGQAYEQYF 308 6994 EBNA3A-193-201 EBV 0.89 1022 EBNA3A-193-201 249 6745 10 EBV EBNA3A FLRGRAYGL effector memory T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-B*08:01 B2M MHCI -6276 chip0423_124676 -0.45 6.92 Chip2 T1D_6 T1D TGTGCTGTCATAGGAATTTCTCAGGGCGGATCTGAAAAGCTGGTCTTT CAVIGISQGGSEKLVF TRAV41*01 TRAJ57*01 12.0 510.0 TGCAGTGCTGAGGCCCGAGGCGGGGTCACGAACACCGGGGAGCCGTTTTTT CSAEARGGVTNTGEPFF TRBV20-1*01 TRBJ2-2*01 2.0 50.0 CAVIGISQGGSEKLVF_CSAEARGGVTNTGEPFF 1 9774 CVB3-P3A CVB 0.6 77 NEG 214 9560 3 CoxsackievirusB P3A GIIYIIYKL Naive T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*02:01 B2M MHCI -6277 chip0423_621425 11.99 7.35 Chip2 T1D_4 T1D TGTGCTGTCAATTCAGGAAACACACCTCTTGTCTTT CAVNSGNTPLVF TRAV1-2*01 TRAJ29*01 21.0 2062.0 TGTGCCAGCAGCCAAGTCAACAACCCGGGGGATGGCTACACCTTC CASSQVNNPGDGYTF TRBV14*01 TRBJ1-2*01 3.0 81.0 CAVNSGNTPLVF_CASSQVNNPGDGYTF 31 4648 EBNA3A-158-166 EBV 0.72 444 NEG 209 4439 10 EBV EBNA3A QAKWRLQTL effector memory T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-B*08:01 B2M MHCI -6278 chip0423_474626 13.6 10.4 Chip2 T1D_5 T1D TGTGCAATGCGGGCCATTGCGGGGGCAAACAACCTCTTCTTT CAMRAIAGANNLFF TRAV14/DV4*01 TRAJ36*01 12.0 929.0 CAMRAIAGANNLFF_ 1 4190 BZLF1-190-197 EBV 0.67 2156 NEG 206 3984 12 EBV BZLF1 RAKFKQLL effector T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-B*08:01 B2M MHCI -6279 chip0423_619948 13.95 10.91 Chip2 T1D_5 T1D TGTGCCAGCACCCAGGTAGACAGACCCAACTATGGCTACACCTTC CASTQVDRPNYGYTF TRBV7-9*01 TRBJ1-2*01 23.0 950.0 _CASTQVDRPNYGYTF 5 4169 BZLF1-190-197 EBV 0.68 2156 NEG 208 3961 12 EBV BZLF1 RAKFKQLL effector T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-B*08:01 B2M MHCI -6280 chip0423_38695 -3.8 12.27 Chip2 T1D_6 T1D TGGGCTGTGAGGTAAACTCAAGTTCCGGGTGTGCACTCTACTTC WAVR*TQg?tSGCALYF TRAV21*01 TRAJ41*01 9.0 207.0 TGTGCCAGCAGCCCTAAAATAGGGTTCGAAAAACTGTTTTTT CASSPKIGFEKLFF TRBV9*01 TRBJ1-4*01 23.0 1017.0 WAVR*TQg?tSGCALYF_CASSPKIGFEKLFF 1 4643 ROTA-VP2-1 ROTA 0.57 17 NEG 188 4455 1 RotavirusA VP2 SLISGMWLL Naive T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*02:01 B2M MHCI -6281 chip0423_105877 -1.62 7.71 Chip2 T1D_4 T1D TGTGCCAGCAGTTTATCGAACAGGCAGCGGGAGCCCCAGCATTTT CASSLSNRQREPQHF TRBV27*01 TRBJ1-5*01 112.0 4905.0 _CASSLSNRQREPQHF 1 8577 GAD2-MMI-8 GAD65 0.51 40 GAD2-MMI-8 182 8395 3 HomoSapiens GAD2 MMIARFKM Naive T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-B*08:01 B2M MHCI -6282 chip0423_421540 12.15 12.32 Chip2 T1D_4 T1D TGCATCGTCAGAGAGGGAGGAGGTGCTGACGGACTCCCCTTT CIVREGGGADGLPF TRAV26-1*01 TRAJ45*01 39.0 2500.0 CIVREGGGADGLPF_ 2 2946 BZLF1-190-197 EBV 0.93 2156 BZLF1-190-197 218 2728 11 EBV BZLF1 RAKFKQLL effector T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-B*08:01 B2M MHCI -6283 chip0423_798106 11.14 6.88 Chip2 T1D_4 T1D TGTGCCAGCAGCCAAGTCAACAACCCGGGGGATGGCTACACCTTC CASSQVNNPGDGYTF TRBV14*01 TRBJ1-2*01 27.0 861.0 _CASSQVNNPGDGYTF 94 7426 EBNA3A-158-166 EBV 0.62 444 NEG 218 7208 10 EBV EBNA3A QAKWRLQTL effector memory T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-B*08:01 B2M MHCI -6284 chip0423_873785 10.82 6.64 Chip2 T1D_6 T1D TGTGCCAGCAGCTTGGGACAGGCCTACGAGCAGTACTCC CASSLGQAYEQYS TRBV7-8*01 TRBJ2-7*01 14.0 805.0 _CASSLGQAYEQYS 3 6728 EBNA3A-193-201 EBV 0.81 1022 EBNA3A-193-201 225 6503 10 EBV EBNA3A FLRGRAYGL effector memory T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-B*08:01 B2M MHCI -6285 chip0423_297451 -2.54 8.48 Chip2 T1D_6 T1D TGTGCCAGCAGCCAAGACGACCGGGACAGGAGGTTGTTGCACACCGGGGAGCTGTTTTTT CASSQDDRDRRLLHTGELFF TRBV14*01 TRBJ2-2*01 32.0 563.0 _CASSQDDRDRRLLHTGELFF 1 6230 PGT-178 PGT 0.69 1480 PGT-178 187 6043 3 HomoSapiens PGT LLAGIGTVPI Naive T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*02:01 B2M MHCI -6286 chip0423_524259 14.37 9.91 Chip2 T1D_4 T1D TGCATCGTCAGAGAGGGAGGAGGTGCTGACGGACTCCCCTTT CIVREGGGADGLPF TRAV26-1*01 TRAJ45*01 2.0 172.0 TGTGCCAGCAGCTTAGCGGTCGGAGAAGGGCCCCAGCATTTT CASSLAVGEGPQHF TRBV7-9*01 TRBJ1-5*01 28.0 1343.0 CIVREGGGADGLPF_CASSLAVGEGPQHF 21 3742 BZLF1-190-197 EBV 0.81 2156 BZLF1-190-197 239 3503 12 EBV BZLF1 RAKFKQLL effector T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-B*08:01 B2M MHCI -6287 chip0423_36283 -2.88 8.08 Chip2 T1D_4 T1D TGTGCAATGGGCGCATCTAACTTTGGAAATGAGAAATTAACCTTT CAMGASNFGNEKLTF TRAV12-3*01 TRAJ48*01 135.0 5558.0 TGTGCCAGCAGCCAAGAACTAGCGGGGGGTGGTGAGCAGTTCTTC CASSQELAGGGEQFF TRBV3-1*01 TRBJ2-1*01 62.0 2833.0 CAMGASNFGNEKLTF_CASSQELAGGGEQFF 1 7022 PGT-178 PGT 0.65 1480 PGT-178 196 6826 2 HomoSapiens PGT LLAGIGTVPI Naive T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*02:01 B2M MHCI -6288 chip0423_874048 8.9 9.07 Chip2 T1D_4 T1D TGCATCCTCCCACTTGCTGGTGGTACTAGCTATGGAAAGCTGACATTT CILPLAGGTSYGKLTF TRAV26-2*01 TRAJ52*01 3.0 171.0 TGCAGCGTTGGAACGGGGGGAACTAATGAAAAACTGTTTTTT CSVGTGGTNEKLFF TRBV29-1*01 TRBJ1-4*01 32.0 1091.0 CILPLAGGTSYGKLTF_CSVGTGGTNEKLFF 1 5357 EBV-BLMF1 EBV 0.47 2531 NEG 217 5140 8 EBV BLMF1 GLCTLVAML effector memory T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*02:01 B2M MHCI -6289 chip0423_694807 9.89 7.1 Chip2 T1D_4 T1D TGTGCAGCAAGTGAAGGAAATGAGAAATTAACCTTT CAASEGNEKLTF TRAV13-1*01 TRAJ48*01 40.0 2105.0 TGTGCCAGCAGCTTAACCGGCCTCCACGAGCAGTACTTC CASSLTGLHEQYF TRBV7-3*01 TRBJ2-7*01 41.0 2651.0 CAASEGNEKLTF_CASSLTGLHEQYF 1 6212 BZLF1-190-197 EBV 0.65 2156 NEG 248 5964 10 EBV BZLF1 RAKFKQLL effector memory T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-B*08:01 B2M MHCI -6290 chip0423_29362 11.72 10.21 Chip2 T1D_6 T1D TGCATCCTCCCACTTGCTGGTGGTACTAGCTATGGAAAGCTGACATTT CILPLAGGTSYGKLTF TRAV26-2*01 TRAJ52*01 87.0 3542.0 TGTGCGAGCCGCTTGGGACAGGCCTACGAGCAGTACTTC CASRLGQAYEQYF TRBV7-8*01 TRBJ2-7*01 2.0 73.0 CILPLAGGTSYGKLTF_CASRLGQAYEQYF 2 5016 EBNA3A-193-201 EBV 0.68 1022 NEG 211 4805 9 EBV EBNA3A FLRGRAYGL effector memory T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-B*08:01 B2M MHCI -6291 chip0423_331204 15.75 9.86 Chip2 T1D_4 T1D TGTGCCAGCAGCTTAGCGGTCGGAGAAGGGCCCCAGCATTTT CASSLAVGEGPQHF TRBV7-9*01 TRBJ1-5*01 40.0 1497.0 _CASSLAVGEGPQHF 113 4604 BZLF1-190-197 EBV 0.84 2156 BZLF1-190-197 230 4374 12 EBV BZLF1 RAKFKQLL effector T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-B*08:01 B2M MHCI -6292 chip0423_228814 10.07 7.13 Chip2 T1D_4 T1D TGCCTCCTGCCTCTTGCTGGTGGTCCTAGCTATGGAAAGCTGACATTT CLLPLAGGPSYGKLTF TRAV26-2*01 TRAJ52*01 54.0 2719.0 TGTGCCAGCAGCTTAGGGCAAGCCTACGAGCAGTACTTC CASSLGQAYEQYF TRBV7-8*01 TRBJ2-7*01 50.0 2773.0 CLLPLAGGPSYGKLTF_CASSLGQAYEQYF 2 6786 EBNA3A-193-201 EBV 0.79 1022 NEG 217 6569 10 EBV EBNA3A FLRGRAYGL effector memory T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-B*08:01 B2M MHCI -6293 chip0423_591267 9.34 8.68 Chip2 T1D_4 T1D TGTGCCAGCAGTCCGCAGGGCGGGAACTATGGCTACACCTTC CASSPQGGNYGYTF TRBV6-1*01 TRBJ1-2*01 10.0 489.0 _CASSPQGGNYGYTF 4 5205 EBV-LMP2-FLY EBV 0.5 355 NEG 184 5021 8 EBV LMP2 FLYALALLL effector memory T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*02:01 B2M MHCI -6294 chip0423_22762 -2.54 12.67 Chip2 T1D_6 T1D CGTGCTGTGGTGCTTTATGGAGGAAGCCACGGAAATCTCATCTTT RAVVLYGGSHGNLIF TRAV8-3*01 TRAJ42*01 3.0 68.0 TGTGCTCTGGTGAATTATGGAGGCTGCCGTGGCGCTCTCTTCTTT CALVNYGGCRGALFF TRAV8-3*01 TRAJ42*01 2.0 5.0 0.29 TGCAGCGTCCCGGCGGGCACTGAAGCTTTCTTT CSVPAGTEAFF TRBV29-1*01 TRBJ1-1*01 11.0 287.0 RAVVLYGGSHGNLIF_CSVPAGTEAFF 1 4131 IAPP-ILK-8 IAPP 0.72 20 NEG 211 3920 1 HomoSapiens IAPP ILKLQVFL Naive T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-B*08:01 B2M MHCI -6295 chip0423_594607 12.55 6.4 Chip2 T1D_5 T1D TGTGCCAGCACCTCTCCCGTAGGATTCTCCGGCTACACCTTC CASTSPVGFSGYTF TRBV7-2*01 TRBJ1-2*01 30.0 1595.0 _CASTSPVGFSGYTF 2 5801 BZLF1-190-197 EBV 0.58 2156 BZLF1-190-197 233 5568 10 EBV BZLF1 RAKFKQLL effector memory T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-B*08:01 B2M MHCI -6296 chip0423_162760 13.59 7.69 Chip2 T1D_5 T1D TGTGCAGAGATGGAAACCTCCTACGACAAGGTGATATTT CAEMETSYDKVIF TRAV13-2*01 TRAJ50*01 33.0 2000.0 TGTGCCAGCACCCACCCCCAGGATGTGAACACCGGGGAGCTGTTTTTT CASTHPQDVNTGELFF TRBV7-9*01 TRBJ2-2*01 60.0 2071.0 CAEMETSYDKVIF_CASTHPQDVNTGELFF 8 3156 BZLF1-190-197 EBV 0.67 2156 NEG 207 2949 10 EBV BZLF1 RAKFKQLL effector memory T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-B*08:01 B2M MHCI -6297 chip0423_622109 16.71 11.18 Chip2 T1D_6 T1D TGTGCCAGTAGTATATATAGCATCAATGAGCAGTTCCTC CASSIYSINEQFL TRBV19*01 TRBJ2-1*01 25.0 1616.0 _CASSIYSINEQFL 1 2767 M1 FLU 0.58 1250 NEG 246 2521 12 InfluenzaA M1 GILGFVFTL effector T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*02:01 B2M MHCI -6298 chip0423_507038 7.58 10.2 Chip2 T1D_6 T1D TGTGCAATGAGCGGATTCCATCAAACTGGGGCAAACAACCTCTTCTTT CAMSGFHQTGANNLFF TRAV12-3*01 TRAJ36*01 58.0 2010.0 TGTGGCGGCAAACCGGGACGGGGGGGCTACGGGCAGTACTTC CGGKPGRGGYGQYF TRBV6-1*01 TRBJ2-7*01 2.0 56.0 CAMSGFHQTGANNLFF_CGGKPGRGGYGQYF 1 8029 EBNA3A-158-166 EBV 0.83 444 EBNA3A-158-166 247 7782 7 EBV EBNA3A QAKWRLQTL transitional T cells between effector and memory populations PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-B*08:01 B2M MHCI -6299 chip0423_395203 -3.15 12.11 Chip2 T1D_6 T1D TGTGCTACGGACGCGGTACGGGGAGGAAAGCTTATCTTC CATDAVRGGKLIF TRAV17*01 TRAJ23*01 2.0 35.0 TGCGCCAGCAGCTTGAACCGACCCGGCGAGCAGTACTTC CASSLNRPGEQYF TRBV5-1*01 TRBJ2-7*01 25.0 1715.0 CATDAVRGGKLIF_CASSLNRPGEQYF 1 4476 MART1-A28L MART1 0.8 84 MART1-A28L 228 4248 1 HomoSapiens MART1 ALGIGILTV Naive T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*02:01 B2M MHCI -6300 chip0423_873435 13.42 7.08 Chip2 T1D_6 T1D TGCATCGCCGTTACCTCGTCCCGGTAACCAGTTCTATTTT CIAVTStc??ccGNQFYF TRAV26-1*01 TRAJ49*01 1.0 20.0 TGCAGCGCCGGCAGGGACGGGACTAATGAAAAACTGTTTTTT CSAGRDGTNEKLFF TRBV29-1*01 TRBJ1-4*01 108.0 5058.0 CIAVTStc??ccGNQFYF_CSAGRDGTNEKLFF 6 5305 EBV-BLMF1 EBV 0.6 2531 NEG 259 5046 10 EBV BLMF1 GLCTLVAML effector memory T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*02:01 B2M MHCI -6301 chip0423_711329 -2.99 10.51 Chip2 T1D_6 T1D _ 6746 6256 PB1-590-599 FLU 0.62 37 NEG 207 6049 4 InfluenzaA PB1 LVSDGGPNLY Naive T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*01:01 B2M MHCI -6302 chip0423_566237 -1.13 7.7 Chip2 T1D_4 T1D TGTGTGGTGAACGAGGCTTCTGGTTTCTGCAAGGCAACTGACCTT CVVNEASGFCKATDL TRAV12-1*01 TRAJ22*01 23.0 1101.0 CVVNEASGFCKATDL_ 1 10805 GAD65-141-149 GAD65 0.73 9 GAD65-141-149 174 10631 3 HomoSapiens GAD65 LLQEYNWEL Naive T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*02:01 B2M MHCI -6303 chip0423_244487 11.07 8.9 Chip2 T1D_6 T1D TGTGCTGTGAGTCCTGCGATGATGCGGGCTGCATGCTCGCTTTT CAVSPAMa?tAGCMLAF TRAV3*01 TRAJ39*01 21.0 1616.0 TGCAGCGTGGGGACAGGGGGCACTAATGAAAAACTGTTTTTT CSVGTGGTNEKLFF TRBV29-1*01 TRBJ1-4*01 1.0 29.0 CAVSPAMa?tAGCMLAF_CSVGTGGTNEKLFF 1 5497 EBV-BLMF1 EBV 0.5 2531 NEG 215 5282 10 EBV BLMF1 GLCTLVAML effector memory T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*02:01 B2M MHCI -6304 chip0423_181588 12.35 10.69 Chip2 T1D_4 T1D TGTGCCAGCAGCTTAGCGGTCGGAGAAGGGCCCCAGCATTTT CASSLAVGEGPQHF TRBV7-9*01 TRBJ1-5*01 7.0 240.0 _CASSLAVGEGPQHF 113 3704 BZLF1-190-197 EBV 0.86 2156 BZLF1-190-197 210 3494 9 EBV BZLF1 RAKFKQLL effector memory T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-B*08:01 B2M MHCI -6305 chip0423_862922 5.81 9.69 Chip2 T1D_6 T1D TGCATCCTCCCACTTGCTGGTGGTACTAGCTATGGAAAGCTGACATTT CILPLAGGTSYGKLTF TRAV26-2*01 TRAJ52*01 42.0 1428.0 TGTGCCAGCAGCTTGGGACAGGCCTACGAGCAGTACTTC CASSLGQAYEQYF TRBV7-8*01 TRBJ2-7*01 15.0 808.0 CILPLAGGTSYGKLTF_CASSLGQAYEQYF 308 7883 EBNA3A-193-201 EBV 0.86 1022 EBNA3A-193-201 217 7666 6 EBV EBNA3A FLRGRAYGL central memory T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-B*08:01 B2M MHCI -6306 chip0423_848415 -1.36 10.21 Chip2 T1D_4 T1D TGTGCATCCGCCATATCTAACTTTGGAAATGAGAAATTAACCTTT CASAISNFGNEKLTF TRAV12-3*01 TRAJ48*01 46.0 1983.0 TGTGCCAGCAGCCTCGACGACGATGGCTACACCTTC CASSLDDDGYTF TRBV9*01 TRBJ1-2*01 38.0 3024.0 CASAISNFGNEKLTF_CASSLDDDGYTF 1 5862 PGT-178 PGT 0.67 1480 PGT-178 220 5642 3 HomoSapiens PGT LLAGIGTVPI Naive T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*02:01 B2M MHCI -6307 chip0423_727283 -4.01 10.18 Chip2 T1D_6 T1D TGTGCCAGTAGTATCCAACGAGACAGGGCAGGTGAAGCTTTCTTT CASSIQRDRAGEAFF TRBV19*01 TRBJ1-1*01 17.0 322.0 _CASSIQRDRAGEAFF 1 5560 NP44-52 FLU 0.48 474 NEG 199 5361 2 InfluenzaA NP CTELKLSDY Naive T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*01:01 B2M MHCI -6308 chip0423_203907 -4.49 9.24 Chip2 T1D_6 T1D TGTGCAGCCTCGTGGTCTAACTTTGGAAATGAGAAATTAACCTTT CAASWSNFGNEKLTF TRAV12-3*01 TRAJ48*01 28.0 1397.0 CAASWSNFGNEKLTF_ 1 5831 PGT-178 PGT 0.84 1480 PGT-178 206 5625 2 HomoSapiens PGT LLAGIGTVPI Naive T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*02:01 B2M MHCI -6309 chip0423_549887 15.55 9.72 Chip2 T1D_5 T1D _ 6746 2801 BZLF1-190-197 EBV 0.86 2156 NEG 195 2606 12 EBV BZLF1 RAKFKQLL effector T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-B*08:01 B2M MHCI -6310 chip0423_677891 5.67 9.91 Chip2 T1D_4 T1D TGTGCTCTCACTACCTATGGTCAGAATTTTGTCTTT CALTTYGQNFVF TRAV38-1*01 TRAJ26*01 24.0 2119.0 TGCAGTGCCTCTCGTGACTCCTACGAGCAGTACTTC CSASRDSYEQYF TRBV20-1*01 TRBJ2-7*01 7.0 443.0 CALTTYGQNFVF_CSASRDSYEQYF 15 6591 EBV-LMP1-1 EBV 0.92 237 NEG 187 6404 6 EBV LMP1 YLLEMLWRL central memory T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*02:01 B2M MHCI -6311 chip0423_131564 5.28 9.33 Chip2 T1D_4 T1D TGTGCCGGCCGTTCCTCCAGTACCGGGGAGTACTTC CAGRSSSTGEYF TRBV6-2*01,TRBV6-3*01 TRBJ2-7*01 2.0 194.0 _CAGRSSSTGEYF 1 5404 EBV-LMP1-1 EBV 0.5 237 NEG 239 5165 6 EBV LMP1 YLLEMLWRL central memory T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*02:01 B2M MHCI -6312 chip0423_661761 11.35 7.15 Chip2 T1D_4 T1D TGCATCGTCAGAGAGGGAGGAGGTGCTGACGGACTCCCCTTT CIVREGGGADGLPF TRAV26-1*01 TRAJ45*01 35.0 1986.0 TGTGCCAGCAGCTTAGCGGTCGGAGAAGGGCCCCAGCATTTT CASSLAVGEGPQHF TRBV7-9*01 TRBJ1-5*01 61.0 2622.0 CIVREGGGADGLPF_CASSLAVGEGPQHF 21 5576 BZLF1-190-197 EBV 0.8 2156 BZLF1-190-197 234 5342 10 EBV BZLF1 RAKFKQLL effector memory T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-B*08:01 B2M MHCI -6313 chip0423_124895 9.44 11.24 Chip2 T1D_5 T1D TGTGCTGGACCCGACACCGGTAACCAGTTCTATTTT CAGPDTGNQFYF TRAV35*01 TRAJ49*01 22.0 2042.0 TGTGCAGCGGCGGAAACCTCCTACGACAAGGTGATATTT CAAAETSYDKVIF TRAV13-1*01 TRAJ50*01 20.0 2008.0 0.36 TGTGCCAGCCAACTAGCGGGAGGCACCGGGGAGCTGTTTTTT CASQLAGGTGELFF TRBV24-1*01 TRBJ2-2*01 46.0 3086.0 CAGPDTGNQFYF_CASQLAGGTGELFF 1 4067 BZLF1-190-197 EBV 0.61 2156 NEG 240 3827 9 EBV BZLF1 RAKFKQLL effector memory T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-B*08:01 B2M MHCI -6314 chip0423_515751 13.85 7.4 Chip2 T1D_4 T1D TGTGCTGTGAGTGATGGAGAAGGAGCCCAGAAGCTGGTATTT CAVSDGEGAQKLVF TRAV8-6*01 TRAJ54*01 85.0 4911.0 TGTGCCAGCAGCTTAACGGTTCTGGCAGGTCCAAACACTGAAGCTTTCTTT CASSLTVLAGPNTEAFF TRBV7-3*01 TRBJ1-1*01 66.0 2155.0 CAVSDGEGAQKLVF_CASSLTVLAGPNTEAFF 44 5873 BZLF1-190-197 EBV 0.95 2156 BZLF1-190-197 232 5641 10 EBV BZLF1 RAKFKQLL effector memory T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-B*08:01 B2M MHCI -6315 chip0423_792205 -0.44 7.67 Chip2 T1D_6 T1D TGTGCCAGCAGCGTAACGTCCAGGCCCAACACTGAAGCTTTCTTT CASSVTSRPNTEAFF TRBV9*01 TRBJ1-1*01 29.0 1654.0 _CASSVTSRPNTEAFF 1 9171 ZNT8-16-24 ZNT8 0.69 39 NEG 227 8944 3 HomoSapiens ZNT8 KMYAFTLES Naive T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*02:01 B2M MHCI -6316 chip0423_578302 11.16 9.5 Chip2 T1D_6 T1D TGCATCCTCCCGCTTGCTGGTTGTGCTAGCTATAGAAAATGAAAATT CILPLAGtg?C*L*KMKI TRAV26-2*01 TRAJ52*01 11.0 778.0 TGTGCCAGCAGCTTGGGACAGGCCTACGAGCAGTACTTC CASSLGQAYEQYF TRBV7-8*01 TRBJ2-7*01 54.0 2039.0 CILPLAGtg?C*L*KMKI_CASSLGQAYEQYF 1 6039 EBNA3A-193-201 EBV 0.92 1022 EBNA3A-193-201 205 5834 9 EBV EBNA3A FLRGRAYGL effector memory T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-B*08:01 B2M MHCI -6317 chip0423_363691 12.16 7.4 Chip2 T1D_4 T1D TGTGCTGTCAATTCAGGAAACACACCTCTTGTCTTT CAVNSGNTPLVF TRAV1-2*01 TRAJ29*01 1.0 114.0 TGTGCCAGCAGCCAAGTCAACAACCCGGGGGATGGCTACACCTTC CASSQVNNPGDGYTF TRBV14*01 TRBJ1-2*01 14.0 385.0 CAVNSGNTPLVF_CASSQVNNPGDGYTF 31 4125 EBNA3A-158-166 EBV 0.57 444 NEG 222 3903 10 EBV EBNA3A QAKWRLQTL effector memory T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-B*08:01 B2M MHCI -6318 chip0423_812847 -2.2 8.85 Chip2 T1D_5 T1D TGTGCAGGGCTCCTATCAGGAGGAGGTGCTGACGGACTCACCTTT CAGLLSGGGADGLTF TRAV27*01 TRAJ45*01 20.0 770.0 TGTGCCAGCAGCCATTGGGCCCCCTATACAGCTGACACTGAAGCTTTCTTT CASSHWAPYTADTEAFF TRBV3-1*01 TRBJ1-1*01 91.0 3462.0 CAGLLSGGGADGLTF_CASSHWAPYTADTEAFF 1 7516 ZNT8-YAK-9 ZNT8 0.59 59 ZNT8-YAK-9 229 7287 3 HomoSapiens ZNT8 YAKWKLCSA Naive T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-B*08:01 B2M MHCI -6319 chip0423_730943 -0.15 7.87 Chip2 T1D_6 T1D TGTGCCTGCCCTTCAGGAAACACACCTCTTGTCTTT CACPSGNTPLVF TRAV12-2*01 TRAJ29*01 1.0 101.0 TGTGCCAGCAGTTACTCCGGGACTGAAGCTTTCTTT CASSYSGTEAFF TRBV6-5*01 TRBJ1-1*01 17.0 899.0 CACPSGNTPLVF_CASSYSGTEAFF 1 11029 MART1-ALA MART1 0.54 269 NEG 198 10831 4 HomoSapiens MART1 ALAGIGILTV Naive T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*02:01 B2M MHCI -6320 chip0423_429281 8.88 9.95 Chip2 T1D_6 T1D TGCAGTGCTAGAGATCAGGTTGGAAACACCATATATTTT CSARDQVGNTIYF TRBV20-1*01 TRBJ1-3*01 30.0 1039.0 _CSARDQVGNTIYF 2 5020 EBV-BLMF1 EBV 0.67 2531 NEG 224 4796 8 EBV BLMF1 GLCTLVAML effector memory T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*02:01 B2M MHCI -6321 chip0423_126816 5.46 9.15 Chip2 T1D_4 T1D TGTGCCAGCAGTTACTCAAGTACAAGGGAGTACTTC CASSYSSTREYF TRBV6-2*01,TRBV6-3*01 TRBJ2-7*01 20.0 998.0 _CASSYSSTREYF 1 7038 EBV-LMP1-1 EBV 0.75 237 NEG 229 6809 6 EBV LMP1 YLLEMLWRL central memory T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*02:01 B2M MHCI -6322 chip0423_445764 5.76 12.94 Chip2 T1D_6 T1D TGTGCTGTGAGGGAATATGGAAACAAACTGGTCTCT CAVREYGNKLVS TRAV1-2*01 TRAJ47*01 1.0 59.0 TGTGCCAGCAGCTTAGCGGGTCGTGAGGGTACGCAGTATTTT CASSLAGREGTQYF TRBV11-3*01 TRBJ2-3*01 13.0 362.0 CAVREYGNKLVS_CASSLAGREGTQYF 1 7095 NP380-388 FLU 0.53 60 NEG 220 6875 7 InfluenzaA NP ELRSRYWAI transitional T cells between effector and memory populations PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-B*08:01 B2M MHCI -6323 chip0423_141125 11.5 6.54 Chip2 T1D_4 T1D TGCATCCTCCCCCTTGCTGGTGGTACTAGCTATGGAAAGCTGACATTT CILPLAGGTSYGKLTF TRAV26-2*01 TRAJ52*01 45.0 2481.0 TGTGCCAGCAGCTCAGGCCAGGCCTACGAGCAGTACTTC CASSSGQAYEQYF TRBV7-8*01 TRBJ2-7*01 16.0 787.0 CILPLAGGTSYGKLTF_CASSSGQAYEQYF 40 6044 EBNA3A-193-201 EBV 0.87 1022 EBNA3A-193-201 262 5782 10 EBV EBNA3A FLRGRAYGL effector memory T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-B*08:01 B2M MHCI -6324 chip0423_749169 10.44 10.16 Chip2 T1D_4 T1D TGTGTAGGTGAAGGGGCTGGGCGTTACCAACTCACTTTC CVGEGAGRYQLTF TRAV25*01 TRAJ28*01 1.0 19.0 CVGEGAGRYQLTF_ 1 6444 EBV-LMP2A EBV 0.56 700 NEG 225 6219 9 EBV LMP2A CLGGLLTMV effector memory T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*02:01 B2M MHCI -6325 chip0423_64334 14.82 9.67 Chip2 T1D_6 T1D TGCATCCTCCCACTTGCTGGTGGTACTAGCTATGGAAAGCTGACATTT CILPLAGGTSYGKLTF TRAV26-2*01 TRAJ52*01 47.0 1654.0 TGTGCCAGCAGCTTGGGACAGGCCTACGAGCAGTACTTC CASSLGQAYEQYF TRBV7-8*01 TRBJ2-7*01 22.0 988.0 CILPLAGGTSYGKLTF_CASSLGQAYEQYF 308 4984 EBNA3A-193-201 EBV 0.43 1022 NEG 228 4756 12 EBV EBNA3A FLRGRAYGL effector T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-B*08:01 B2M MHCI -6326 chip0423_668456 -0.66 9.75 Chip2 T1D_6 T1D TGCGCCAGCAGCCCTTTGGCGGGGACCTTGGGCTCCTACGAGCAGTACTTC CASSPLAGTLGSYEQYF TRBV4-3*01 TRBJ2-7*01 65.0 3742.0 _CASSPLAGTLGSYEQYF 1 9128 PREINS-6-14 INS 0.57 20 PREINS-6-14 198 8930 3 HomoSapiens PREINS RLLPLLALL Naive T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*02:01 B2M MHCI -6327 chip0423_469560 11.45 10.54 Chip2 T1D_4 T1D TGTGCTGTGTGTGCCCCGACCTGGGTTGTCAACATCATCTTT CAVCAPTWVVNIIF TRAV3*01 TRAJ30*01 140.0 5801.0 CAVCAPTWVVNIIF_ 1 6118 EBNA3A-193-201 EBV 0.58 1022 NEG 224 5894 9 EBV EBNA3A FLRGRAYGL effector memory T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-B*08:01 B2M MHCI -6328 chip0423_274339 5.66 10.54 Chip2 T1D_4 T1D TGTGCCAGCAGCTTTATTGCGGGGAATGAGCAGTTCTTC CASSFIAGNEQFF TRBV7-9*01 TRBJ2-1*01 3.0 79.0 _CASSFIAGNEQFF 1 7732 EBV-LMP1-1 EBV 0.8 237 EBV-LMP1-1 218 7514 6 EBV LMP1 YLLEMLWRL central memory T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*02:01 B2M MHCI -6329 chip0423_152113 9.62 7.36 Chip2 T1D_5 T1D TGTGCCAGCATCCCAAAACAAGAGAACACCATATATTTT CASIPKQENTIYF TRBV12-3*01,TRBV12-4*01 TRBJ1-3*01 1.0 20.0 _CASIPKQENTIYF 3 5939 BZLF1-190-197 EBV 1.0 2156 NEG 206 5733 10 EBV BZLF1 RAKFKQLL effector memory T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-B*08:01 B2M MHCI -6330 chip0423_630787 7.1 10.51 Chip2 T1D_6 T1D _ 6746 6222 ROTA-VP6 ROTA 0.56 47 ROTA-VP6 210 6012 7 RotavirusA VP6 TLLANVTAV transitional T cells between effector and memory populations PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*02:01 B2M MHCI -6331 chip0423_521872 7.01 12.6 Chip2 T1D_6 T1D TGTGCTCCTATGGATAGCAACTATCAGTTAATCTGG CAPMDSNYQLIW TRAV16*01 TRAJ33*01 35.0 3363.0 TGTGCCAGCGCTCCGGGGACGGGCTATGGCTACACCTCC CASAPGTGYGYTS TRBV6-1*01 TRBJ1-2*01 8.0 625.0 CAPMDSNYQLIW_CASAPGTGYGYTS 1 6353 ROTA-VP6 ROTA 0.75 47 NEG 192 6161 7 RotavirusA VP6 TLLANVTAV transitional T cells between effector and memory populations PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*02:01 B2M MHCI -6332 chip0423_689151 10.82 6.48 Chip2 T1D_5 T1D TGTGCCGCAGCGGCACCCTCCTCCGACAAGGTGATAATT CAAAAPSSDKVII TRAV13-1*01 TRAJ50*01 4.0 178.0 TGTGCCAGCAGCTTAGTAGACAGGCCCTACGAGCAGTACTTC CASSLVDRPYEQYF TRBV7-9*01 TRBJ2-7*01 84.0 4950.0 CAAAAPSSDKVII_CASSLVDRPYEQYF 1 4586 BZLF1-190-197 EBV 0.71 2156 NEG 217 4369 10 EBV BZLF1 RAKFKQLL effector memory T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-B*08:01 B2M MHCI -6333 chip0423_29945 8.03 11.22 Chip2 T1D_5 T1D TGTGCAGCAAAGGAAACCTCCTACGACAAGGTGATATTT CAAKETSYDKVIF TRAV13-1*01 TRAJ50*01 13.0 774.0 TGCATCCTGAGAGACAACGGGCAGGAGAGCACTTACTTTT CILRDNgg??gcRRALTF TRAV26-2*01 TRAJ5*01 13.0 789.0 0.42 TGTGCCAGCAGCTTACTAGGGGGCACCGACACCGGGGAGCTGTTTTTT CASSLLGGTDTGELFF TRBV7-9*01 TRBJ2-2*01 57.0 1924.0 CAAKETSYDKVIF_CASSLLGGTDTGELFF 6 5667 BZLF1-190-197 EBV 0.71 2156 BZLF1-190-197 224 5443 7 EBV BZLF1 RAKFKQLL transitional T cells between effector and memory populations PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-B*08:01 B2M MHCI -6334 chip0423_109614 12.16 6.71 Chip2 T1D_4 T1D TGTGCCAGCAGCCAAGTCAACAACCCGGGGGATGGCTACACCTTC CASSQVNNPGDGYTF TRBV14*01 TRBJ1-2*01 18.0 741.0 _CASSQVNNPGDGYTF 94 4441 EBNA3A-158-166 EBV 0.75 444 EBNA3A-158-166 265 4176 10 EBV EBNA3A QAKWRLQTL effector memory T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-B*08:01 B2M MHCI -6335 chip0423_666772 15.68 9.81 Chip2 T1D_4 T1D TGCGGAGCAGACGCAACCTCAGGAACCTACCCATACATCTTT CGADATSGTYPYIF TRAV34*01 TRAJ40*01 17.0 673.0 TGCAGCGTGGGGTCGGGGGAGGGCTACGAGCAGTACTTC CSVGSGEGYEQYF TRBV29-1*01 TRBJ2-7*01 32.0 2645.0 CGADATSGTYPYIF_CSVGSGEGYEQYF 1 5071 BZLF1-190-197 EBV 0.5 2156 NEG 217 4854 12 EBV BZLF1 RAKFKQLL effector T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-B*08:01 B2M MHCI -6336 chip0423_554540 -3.65 10.65 Chip2 healthy_3 healthy _ 6746 4771 IGRP-265-273 IGRP 0.95 34 IGRP-265-273 200 4571 2 HomoSapiens IGRP VLFGLGFAI Naive T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*02:01 B2M MHCI -6337 chip0423_855055 9.63 11.1 Chip2 T1D_5 T1D TGTGCAGCGGCGGAAACCTCCTACGACAAGGTGATATTT CAAAETSYDKVIF TRAV13-1*01 TRAJ50*01 14.0 856.0 TGTGCCAGCCAACTAGCGGGAGGCACCGGGGAGCTGTTTTTT CASQLAGGTGELFF TRBV24-1*01 TRBJ2-2*01 22.0 1080.0 CAAAETSYDKVIF_CASQLAGGTGELFF 131 3709 BZLF1-190-197 EBV 0.58 2156 NEG 203 3506 9 EBV BZLF1 RAKFKQLL effector memory T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-B*08:01 B2M MHCI -6338 chip0423_475241 15.69 10.43 Chip2 T1D_5 T1D TGTGCCAGCAGCTTGTTAGGCAGTCAGAACACTGAAGCTTTCTTT CASSLLGSQNTEAFF TRAV36/DV7*01 TRAJ40*01 4.0 11.0 TGTGCCAGCAGCTTGTTAGGCAGTCAGAACACTGAAGCTTTCTTT CASSLLGSQNTEAFF TRBV7-9*01 TRBJ1-1*01 93.0 3260.0 CASSLLGSQNTEAFF_CASSLLGSQNTEAFF 1 4177 BZLF1-190-197 EBV 0.42 2156 NEG 218 3959 12 EBV BZLF1 RAKFKQLL effector T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-B*08:01 B2M MHCI -6339 chip0423_831805 12.51 7.38 Chip2 T1D_6 T1D TGCATCCTCCCACTTGCTGGTGGTACTAGCTATGGAAAGCTGACATTT CILPLAGGTSYGKLTF TRAV26-2*01 TRAJ52*01 88.0 3579.0 CILPLAGGTSYGKLTF_ 55 5112 EBNA3A-193-201 EBV 0.86 1022 EBNA3A-193-201 223 4889 10 EBV EBNA3A FLRGRAYGL effector memory T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-B*08:01 B2M MHCI -6340 chip0423_198205 10.97 7.15 Chip2 T1D_6 T1D _ 6746 6608 EBNA3A-193-201 EBV 0.87 1022 EBNA3A-193-201 215 6393 10 EBV EBNA3A FLRGRAYGL effector memory T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-B*08:01 B2M MHCI -6341 chip0423_149382 14.64 10.24 Chip2 T1D_4 T1D TGTGCCAGCAGCTTAGCGGTCGGAGAAGGGCCCCAGCATTTT CASSLAVGEGPQHF TRBV7-9*01 TRBJ1-5*01 66.0 2818.0 _CASSLAVGEGPQHF 113 3787 BZLF1-190-197 EBV 0.76 2156 BZLF1-190-197 234 3553 12 EBV BZLF1 RAKFKQLL effector T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-B*08:01 B2M MHCI -6342 chip0423_832683 12.68 6.94 Chip2 T1D_5 T1D TGTGCAGCAAGTGAAACCTCCTACGACAAGGTGATATTT CAASETSYDKVIF TRAV13-1*01 TRAJ50*01 36.0 2022.0 TGTGCCAGCAGCTTACTGGGGAATAACGATTCACCCCTCCACTTT CASSLLGNNDSPLHF TRBV7-9*01 TRBJ1-6*01 30.0 951.0 CAASETSYDKVIF_CASSLLGNNDSPLHF 2 3504 BZLF1-190-197 EBV 0.5 2156 NEG 229 3275 10 EBV BZLF1 RAKFKQLL effector memory T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-B*08:01 B2M MHCI -6343 chip0423_582195 10.61 6.54 Chip2 T1D_5 T1D TGTGCCAGCAGTTACACAGGGGAATCAGGGTCCTACGAGCAGTACTTC CASSYTGESGSYEQYF TRBV12-3*01,TRBV12-4*01 TRBJ2-7*01 127.0 5610.0 _CASSYTGESGSYEQYF 1 6295 BZLF1-190-197 EBV 0.92 2156 NEG 232 6063 10 EBV BZLF1 RAKFKQLL effector memory T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-B*08:01 B2M MHCI -6344 chip0423_718322 -2.9 10.76 Chip2 T1D_4 T1D TGCGCTGTGAGTCATTTTTCTGGTGGCTACAATAAGCTGATTTTT CAVSHFSGGYNKLIF TRAV1-1*01 TRAJ4*01 1.0 46.0 TGCGCCAGCAGTTTCAGGGGCTTTGGCACTGAAGCTTTCTTT CASSFRGFGTEAFF TRBV28*01 TRBJ1-1*01 14.0 764.0 CAVSHFSGGYNKLIF_CASSFRGFGTEAFF 1 5474 GAD2-MAA-10 GAD65 0.92 6 NEG 179 5295 3 HomoSapiens GAD2 MAALPRLIAF Naive T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-B*08:01 B2M MHCI -6345 chip0423_467730 8.34 11.35 Chip2 T1D_4 T1D _ 6746 4915 EBNA3A-193-201 EBV 0.8 1022 NEG 214 4701 7 EBV EBNA3A FLRGRAYGL transitional T cells between effector and memory populations PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-B*08:01 B2M MHCI -6346 chip0423_883307 11.76 6.74 Chip2 T1D_6 T1D TGTGCTGTGCGAATTCTTCCTAACTTTGGAAATGAGAAATTAACCTCT CAVRILPNFGNEKLTS TRAV21*01 TRAJ48*01 39.0 1199.0 TGTGCCAGCACTTCGACAGAAACCGTCGATGGCTACACCTTC CASTSTETVDGYTF TRBV5-4*01 TRBJ1-2*01 22.0 1076.0 CAVRILPNFGNEKLTS_CASTSTETVDGYTF 1 5847 EBNA3A-158-166 EBV 0.8 444 NEG 251 5596 10 EBV EBNA3A QAKWRLQTL effector memory T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-B*08:01 B2M MHCI -6347 chip0423_155694 6.62 10.1 Chip2 T1D_5 T1D TGTGCCAGCAGCTTACTTGGCGGAGACTCTGGAAACACCATATATTTT CASSLLGGDSGNTIYF TRBV7-9*01 TRBJ1-3*01 9.0 259.0 _CASSLLGGDSGNTIYF 1 9658 BZLF1-190-197 EBV 0.46 2156 NEG 209 9449 6 EBV BZLF1 RAKFKQLL central memory T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-B*08:01 B2M MHCI -6348 chip0423_302562 -3.73 11.0 Chip2 T1D_4 T1D _ 6746 5046 PGT-178 PGT 0.72 1480 PGT-178 196 4850 1 HomoSapiens PGT LLAGIGTVPI Naive T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*02:01 B2M MHCI -6349 chip0423_139647 13.27 7.63 Chip2 T1D_4 T1D TGTGCTGTGAGTGATGGAGAAGGAGCCCAGAAGCTGGTATTT CAVSDGEGAQKLVF TRAV8-6*01 TRAJ54*01 140.0 6625.0 TGTGCCAGCAGCTTAACGGTTCTGGCAGGTCCAAACACTGAAGCTTTCTTT CASSLTVLAGPNTEAFF TRBV7-3*01 TRBJ1-1*01 96.0 3248.0 CAVSDGEGAQKLVF_CASSLTVLAGPNTEAFF 44 4727 BZLF1-190-197 EBV 0.86 2156 BZLF1-190-197 228 4499 10 EBV BZLF1 RAKFKQLL effector memory T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-B*08:01 B2M MHCI -6350 chip0423_413722 6.61 10.84 Chip2 T1D_5 T1D TGTGCCAGCGGCGGGGAGAGGGGGTTGAAGACCCAGTACTTC CASGGERGLKTQYF TRBV13*01 TRBJ2-5*01 19.0 1519.0 _CASGGERGLKTQYF 1 9802 ZNT8-YAY-8 ZNT8 0.82 54 ZNT8-YAY-8 177 9625 7 HomoSapiens ZNT8 YAYAKWKL transitional T cells between effector and memory populations PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-B*08:01 B2M MHCI -6351 chip0423_178609 12.02 6.88 Chip2 T1D_4 T1D TGTGGAGCAGACGCAACCTCAGGAACCTACAAATACATCTTT CGADATSGTYKYIF TRAV34*01 TRAJ40*01 34.0 1814.0 TGCAGCGTGGGGTCGGGGGAGGGCTACGAGCAGTACTTC CSVGSGEGYEQYF TRBV29-1*01 TRBJ2-7*01 92.0 7090.0 CGADATSGTYKYIF_CSVGSGEGYEQYF 6 5285 BZLF1-190-197 EBV 1.0 2156 NEG 236 5049 10 EBV BZLF1 RAKFKQLL effector memory T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-B*08:01 B2M MHCI -6352 chip0423_817751 11.89 8.8 Chip2 T1D_4 T1D TGCATCCTGCCTCTTGCTGGTGGTACTAGCTATGGAAAGCTGACATTT CILPLAGGTSYGKLTF TRAV26-2*01 TRAJ52*01 26.0 1184.0 TGTGCCAGCAGCTTAGGGCAAGCCTACGAGCAGTACTTC CASSLGQAYEQYF TRBV7-8*01 TRBJ2-7*01 1.0 24.0 CILPLAGGTSYGKLTF_CASSLGQAYEQYF 308 3806 EBNA3A-193-201 EBV 0.71 1022 NEG 225 3581 10 EBV EBNA3A FLRGRAYGL effector memory T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-B*08:01 B2M MHCI -6353 chip0423_284147 13.36 11.19 Chip2 T1D_5 T1D TGTGCAGCGGCGGAAACCTCCTACGACAAGGTGATATTT CAAAETSYDKVIF TRAV13-1*01 TRAJ50*01 20.0 1634.0 TGTGCCAGCCAACTAGCGGGAGGCACCGGGGAGCTGTTTTTT CASQLAGGTGELFF TRBV24-1*01 TRBJ2-2*01 40.0 2647.0 CAAAETSYDKVIF_CASQLAGGTGELFF 131 2854 BZLF1-190-197 EBV 1.0 2156 NEG 206 2648 9 EBV BZLF1 RAKFKQLL effector memory T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-B*08:01 B2M MHCI -6354 chip0423_576206 14.48 9.72 Chip2 T1D_4 T1D TGTGCTGTCAATTCAGGAAACACACCTCTTGTCTTT CAVNSGNTPLVF TRAV1-2*01 TRAJ29*01 3.0 16.0 TGTGCCAGCAGCCTAGTCTACAGCCCGGGGGATGGCTACACCTTC CASSLVYSPGDGYTF TRBV14*01 TRBJ1-2*01 4.0 64.0 CAVNSGNTPLVF_CASSLVYSPGDGYTF 1 8924 EBNA3A-158-166 EBV 0.65 444 EBNA3A-158-166 215 8709 12 EBV EBNA3A QAKWRLQTL effector T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-B*08:01 B2M MHCI -6355 chip0423_351249 16.6 11.33 Chip2 T1D_6 T1D TGTGCCGTGGGGACCATCGCTCTAGCAACACAGGCAAACTACCCCTT CAVGTIAct?SNTGKLPL TRAV8-3*01 TRAJ37*01 18.0 788.0 TGTGCCAGCAGCTTATCGGGTCGTGAGGGTACGCAGTATTTT CASSLSGREGTQYF TRBV11-3*01 TRBJ2-3*01 9.0 542.0 CAVGTIAct?SNTGKLPL_CASSLSGREGTQYF 1 4333 NP380-388 FLU 0.57 60 NEG 200 4133 12 InfluenzaA NP ELRSRYWAI effector T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-B*08:01 B2M MHCI -6356 chip0423_127474 9.36 8.97 Chip2 T1D_5 T1D _ 6746 5225 BZLF1-190-197 EBV 0.77 2156 NEG 223 5002 8 EBV BZLF1 RAKFKQLL effector memory T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-B*08:01 B2M MHCI -6357 chip0423_714716 10.46 7.75 Chip2 T1D_6 T1D TGCAGCGCCGGCAGGGACGGGACTAATGAAAAACTGTTTTTT CSAGRDGTNEKLFF TRBV29-1*01 TRBJ1-4*01 227.0 10306.0 _CSAGRDGTNEKLFF 159 5204 EBV-BLMF1 EBV 0.71 2531 NEG 213 4991 10 EBV BLMF1 GLCTLVAML effector memory T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*02:01 B2M MHCI -6358 chip0423_59316 13.36 10.27 Chip2 T1D_5 T1D TGTGCAGCAATGGAAACCTCCTACGACAAGGTGATATTT CAAMETSYDKVIF TRAV13-1*01 TRAJ50*01 26.0 2083.0 TGTGCCACCAGAGACCACAGGGACGGGACCGGGGAGCTGTTTTTT CATRDHRDGTGELFF TRBV24-1*01 TRBJ2-2*01 19.0 588.0 CAAMETSYDKVIF_CATRDHRDGTGELFF 4 5929 BZLF1-190-197 EBV 0.5 2156 NEG 208 5721 9 EBV BZLF1 RAKFKQLL effector memory T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-B*08:01 B2M MHCI -6359 chip0423_43190 12.16 10.41 Chip2 T1D_4 T1D TGTGCAGCGGCGGAAACCTCCTACGACAAGGTGATATTT CAAAETSYDKVIF TRAV13-1*01 TRAJ50*01 5.0 108.0 TGTGCCAGCAGCTTAGCGGTCGGAGAAGGGCCCCAGCATTTT CASSLAVGEGPQHF TRBV7-9*01 TRBJ1-5*01 121.0 3886.0 CAAAETSYDKVIF_CASSLAVGEGPQHF 1 5074 BZLF1-190-197 EBV 0.84 2156 BZLF1-190-197 240 4834 9 EBV BZLF1 RAKFKQLL effector memory T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-B*08:01 B2M MHCI -6360 chip0423_288605 11.12 7.67 Chip2 T1D_6 T1D TGCAGCGCCGGCAGGGACGGGACTAATGAAAAACTGTTTTTT CSAGRDGTNEKLFF TRBV29-1*01 TRBJ1-4*01 202.0 10486.0 _CSAGRDGTNEKLFF 159 4351 EBV-BLMF1 EBV 0.86 2531 NEG 213 4138 10 EBV BLMF1 GLCTLVAML effector memory T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*02:01 B2M MHCI -6361 chip0423_732201 13.03 7.32 Chip2 T1D_6 T1D TGCAGCGCCGGCAGGGACGGGACTAATGAAAAACTGTTTTTT CSAGRDGTNEKLFF TRBV29-1*01 TRBJ1-4*01 16.0 645.0 _CSAGRDGTNEKLFF 159 4082 EBV-BLMF1 EBV 0.5 2531 NEG 224 3858 10 EBV BLMF1 GLCTLVAML effector memory T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*02:01 B2M MHCI -6362 chip0423_63493 13.32 7.66 Chip2 T1D_5 T1D TGTGCCAGCAGCCGTCTTGGGGAACCCACCGGGGAGCTGTTTTTT CASSRLGEPTGELFF TRBV7-2*01 TRBJ2-2*01 26.0 697.0 _CASSRLGEPTGELFF 1 3008 BZLF1-190-197 EBV 0.5 2156 NEG 215 2793 10 EBV BZLF1 RAKFKQLL effector memory T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-B*08:01 B2M MHCI -6363 chip0423_44684 9.21 8.58 Chip2 T1D_4 T1D TGTGCCAGCAGCTTAACGGTTCTGGCAGGTCCAAACACTGAAGCTTTCTTT CASSLTVLAGPNTEAFF TRBV7-3*01 TRBJ1-1*01 86.0 2643.0 _CASSLTVLAGPNTEAFF 32 4875 BZLF1-190-197 EBV 0.8 2156 BZLF1-190-197 212 4663 8 EBV BZLF1 RAKFKQLL effector memory T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-B*08:01 B2M MHCI -6364 chip0423_123583 14.03 9.74 Chip2 T1D_6 T1D TGTGCCAGCAGCTTGGGACAGGCCTACGAGCAGTACTTC CASSLGQAYEQYF TRBV7-8*01 TRBJ2-7*01 43.0 2549.0 _CASSLGQAYEQYF 175 4549 EBNA3A-193-201 EBV 0.71 1022 EBNA3A-193-201 233 4316 12 EBV EBNA3A FLRGRAYGL effector T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-B*08:01 B2M MHCI -6365 chip0423_368111 16.1 9.97 Chip2 T1D_5 T1D TGTGCAGCGGCGGAAACCTCCTACGACAAGGTGATATTT CAAAETSYDKVIF TRAV13-1*01 TRAJ50*01 17.0 1117.0 TGTGCCAGCCAACTAGCGGGAGGCACCGGGGAGCTGTTTTTT CASQLAGGTGELFF TRBV24-1*01 TRBJ2-2*01 11.0 756.0 CAAAETSYDKVIF_CASQLAGGTGELFF 131 3457 BZLF1-190-197 EBV 0.56 2156 NEG 202 3255 12 EBV BZLF1 RAKFKQLL effector T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-B*08:01 B2M MHCI -6366 chip0423_394939 6.25 11.87 Chip2 T1D_4 T1D TGCATCCTGCCTCTTGCTGGTGGTACTAGCTATGGAAAGCTGACATTT CILPLAGGTSYGKLTF TRAV26-2*01 TRAJ52*01 3.0 38.0 TGTGCCAGCAGCTTAGGGCAAGCCTACGAGCAGTACTTC CASSLGQAYEQYF TRBV7-8*01 TRBJ2-7*01 37.0 1970.0 CILPLAGGTSYGKLTF_CASSLGQAYEQYF 308 6607 EBNA3A-193-201 EBV 0.86 1022 EBNA3A-193-201 189 6418 7 EBV EBNA3A FLRGRAYGL transitional T cells between effector and memory populations PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-B*08:01 B2M MHCI -6367 chip0423_81797 7.65 11.6 Chip2 T1D_4 T1D TGTGCAGGAGCTGAGGATAGCAACTATCAGTTAATCTGG CAGAEDSNYQLIW TRAV27*01 TRAJ33*01 28.0 1502.0 CAGAEDSNYQLIW_ 1 5279 EBNA3A-193-201 EBV 0.65 1022 EBNA3A-193-201 189 5090 7 EBV EBNA3A FLRGRAYGL transitional T cells between effector and memory populations PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-B*08:01 B2M MHCI -6368 chip0423_390023 11.02 9.18 Chip2 T1D_4 T1D TGTGCCAGCAGCTTAACGGTTCTGGCAGGTCCAAACACTGAAGCTTTCTTT CASSLTVLAGPNTEAFF TRBV7-3*01 TRBJ1-1*01 20.0 401.0 _CASSLTVLAGPNTEAFF 32 3798 BZLF1-190-197 EBV 0.92 2156 NEG 207 3591 10 EBV BZLF1 RAKFKQLL effector memory T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-B*08:01 B2M MHCI -6369 chip0423_76256 13.33 6.76 Chip2 healthy_4 healthy TGTGCCAGCAGCTCCGGACAGGCCTACGAGCAGTACTTC CASSSGQAYEQYF TRBV7-8*01 TRBJ2-7*01 36.0 2084.0 _CASSSGQAYEQYF 49 3779 EBNA3A-193-201 EBV 1.0 1022 NEG 205 3574 10 EBV EBNA3A FLRGRAYGL effector memory T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-B*08:01 B2M MHCI -6370 chip0423_477175 10.49 6.65 Chip2 T1D_6 T1D TGTGCCAGCAGCTTGGGACAGGCCTACGAGCAGTACTTC CASSLGQAYEQYF TRBV7-8*01 TRBJ2-7*01 1.0 69.0 _CASSLGQAYEQYF 175 8743 EBNA3A-193-201 EBV 0.76 1022 EBNA3A-193-201 233 8510 10 EBV EBNA3A FLRGRAYGL effector memory T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-B*08:01 B2M MHCI -6371 chip0423_36714 -1.51 7.72 Chip2 T1D_5 T1D TGTGCAGCAACCCGTGTCCAGGCAGGAACTGCTCTGATCTTT CAATRVQAGTALIF TRAV13-1*01 TRAJ15*01 27.0 1308.0 TGTGCCAGCAGCTTTTCAGCCCCGAACACCGGGGAGCTGTTTGTT CASSFSAPNTGELFV TRBV7-6*01 TRBJ2-2*01 3.0 65.0 CAATRVQAGTALIF_CASSFSAPNTGELFV 1 6781 GAD2-HPR-8 GAD65 0.7 9 GAD2-HPR-8 199 6582 3 HomoSapiens GAD2 HPRYFNQL Naive T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-B*08:01 B2M MHCI -6372 chip0423_301381 10.17 10.42 Chip2 T1D_4 T1D TGTGCCAGCAGCCAAGTCAACAACCCGGGGGATGGCTACACCTTC CASSQVNNPGDGYTF TRBV14*01 TRBJ1-2*01 29.0 693.0 _CASSQVNNPGDGYTF 94 6003 EBNA3A-158-166 EBV 0.81 444 EBNA3A-158-166 211 5792 9 EBV EBNA3A QAKWRLQTL effector memory T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-B*08:01 B2M MHCI -6373 chip0423_191762 11.66 6.45 Chip2 T1D_4 T1D TGTGCCGTGAATTCCTTTGGGGGTGGCTACAATAAGCTGATTTTT CAVNSFGGGYNKLIF TRAV8-1*01 TRAJ4*01 23.0 1386.0 TGTGCCAGCAGCCCGCCAAATGGGAGGGCCGAGCAGTACTTC CASSPPNGRAEQYF TRBV5-6*01 TRBJ2-7*01 14.0 821.0 CAVNSFGGGYNKLIF_CASSPPNGRAEQYF 1 7134 EBV-LMP1-1 EBV 0.71 237 NEG 230 6904 6 EBV LMP1 YLLEMLWRL central memory T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*02:01 B2M MHCI -6374 chip0423_107284 5.01 12.0 Chip2 healthy_4 healthy TGTGCCAGCAGTGAATTAGGGGCTACGCAGTATTTT CASSELGATQYF TRBV25-1*01 TRBJ2-3*01 20.0 1135.0 _CASSELGATQYF 1 4133 M1 FLU 0.88 1250 NEG 206 3927 6 InfluenzaA M1 GILGFVFTL central memory T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*02:01 B2M MHCI -6375 chip0423_869256 7.5 12.28 Chip2 healthy_4 healthy TGTGCCAGCAGCGGCGAAGAGGGGAGGGAAAATGAGCAGTTCTTC CASSGEEGRENEQFF TRBV6-2*01,TRBV6-3*01 TRBJ2-1*01 12.0 374.0 _CASSGEEGRENEQFF 1 3598 HCVNS4B-1807-1816 HCV 0.85 74 NEG 200 3398 7 HCV NS4B LLFNILGGWV transitional T cells between effector and memory populations PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*02:01 B2M MHCI -6376 chip0423_3370 10.49 9.1 Chip2 T1D_4 T1D TGTGCCAGCAGCTTAAGGGGGTCCGGGGGCACTGAAGCTTTCTTT CASSLRGSGGTEAFF TRBV13*01 TRBJ1-1*01 15.0 900.0 _CASSLRGSGGTEAFF 1 5240 NP44-52 FLU 0.75 474 NEG 247 4993 10 InfluenzaA NP CTELKLSDY effector memory T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*01:01 B2M MHCI -6377 chip0423_852233 11.74 8.17 Chip2 T1D_4 T1D TGTGCTGTGAGAGACACGACGTGGGATGACAAGATCATCTTT CAVRDTTWDDKIIF TRAV3*01 TRAJ30*01 7.0 288.0 TGTGCCAGCAGCTTAGGAGGGGGAGAGGGGGCCAGTGAGCAGTTCTTC CASSLGGGEGASEQFF TRBV7-6*01 TRBJ2-1*01 15.0 655.0 CAVRDTTWDDKIIF_CASSLGGGEGASEQFF 12 4403 EBNA3A-193-201 EBV 0.47 1022 NEG 204 4199 10 EBV EBNA3A FLRGRAYGL effector memory T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-B*08:01 B2M MHCI -6378 chip0423_429933 11.69 6.19 Chip2 T1D_4 T1D TGTCTTCTGGAAGCCAATTGCAGGGTATGCACTGAACTTC CLLEANtg??caGYALNF TRAV40*01 TRAJ41*01 2.0 75.0 TGTGCCAGCAGCTTAGGGCAAGCCTACGAGCAGTACTTC CASSLGQAYEQYF TRBV7-8*01 TRBJ2-7*01 50.0 2945.0 CLLEANtg??caGYALNF_CASSLGQAYEQYF 1 5762 EBNA3A-193-201 EBV 0.56 1022 NEG 211 5551 10 EBV EBNA3A FLRGRAYGL effector memory T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-B*08:01 B2M MHCI -6379 chip0423_736615 15.31 10.67 Chip2 T1D_5 T1D TGTGCAGCAAGGGAAACCTCCTACGACAAGGTGATATTT CAARETSYDKVIF TRAV13-1*01 TRAJ50*01 30.0 2048.0 TGTGCCAGCAGCCGGATAGGACAGGGGGTGGGAGAGACCCAGTACTTC CASSRIGQGVGETQYF TRBV7-9*01 TRBJ2-5*01 6.0 169.0 CAARETSYDKVIF_CASSRIGQGVGETQYF 3 2744 BZLF1-190-197 EBV 0.58 2156 NEG 194 2550 12 EBV BZLF1 RAKFKQLL effector T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-B*08:01 B2M MHCI -6380 chip0423_578446 13.89 7.24 Chip2 T1D_4 T1D TGTGCCAGCAGCCAAGTCAACAACCCGGGGGATGGCTACACCTTC CASSQVNNPGDGYTF TRBV14*01 TRBJ1-2*01 54.0 759.0 _CASSQVNNPGDGYTF 94 4591 EBNA3A-158-166 EBV 0.52 444 EBNA3A-158-166 222 4369 10 EBV EBNA3A QAKWRLQTL effector memory T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-B*08:01 B2M MHCI -6381 chip0423_557005 8.8 8.8 Chip2 T1D_5 T1D TGCATCCTCCCACTTGCTGGTGGTACTAGCTATGGAAAGCTGACATTT CILPLAGGTSYGKLTF TRAV26-2*01 TRAJ52*01 17.0 754.0 TGTGCCAGCAGTCCCCCGGGGAGAAATGAAAAACTGTTTTTT CASSPPGRNEKLFF TRBV12-3*01,TRBV12-4*01 TRBJ1-4*01 8.0 320.0 CILPLAGGTSYGKLTF_CASSPPGRNEKLFF 1 5332 BZLF1-190-197 EBV 0.89 2156 BZLF1-190-197 199 5133 8 EBV BZLF1 RAKFKQLL effector memory T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-B*08:01 B2M MHCI -6382 chip0423_832546 10.54 11.48 Chip2 T1D_4 T1D TGTGCAGGCCCATCATGGACACGGGCAGGAAAGCCCTTGCTTTT CAGPSWTc?gGRKALAF TRAV25*01 TRAJ5*01 69.0 3956.0 CAGPSWTc?gGRKALAF_ 1 4182 BZLF1-190-197 EBV 0.5 2156 NEG 219 3963 9 EBV BZLF1 RAKFKQLL effector memory T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-B*08:01 B2M MHCI -6383 chip0423_369171 11.34 6.85 Chip2 T1D_4 T1D TGCATCCTGCCTCTTGCTGGTGGTACTAGCTATGGAAAGCTGACATTT CILPLAGGTSYGKLTF TRAV26-2*01 TRAJ52*01 38.0 1980.0 TGTGCCAGCAGCTTAGGGCAAGCCTACGAGCAGTACTTC CASSLGQAYEQYF TRBV7-8*01 TRBJ2-7*01 102.0 5677.0 CILPLAGGTSYGKLTF_CASSLGQAYEQYF 308 5730 EBNA3A-193-201 EBV 0.47 1022 NEG 244 5486 10 EBV EBNA3A FLRGRAYGL effector memory T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-B*08:01 B2M MHCI -6384 chip0423_344373 12.1 8.5 Chip2 T1D_4 T1D TGTGCTGTGTGTGGCTCGGCGTGGGGTGGCGAGGTCATCTGT CAVCGSAWGGEVIC TRAV3*01 TRAJ30*01 7.0 589.0 TGTGCCAGCAGCTTAGGAGGGGGAGAGGGGGCCAGTGAGCAGTTCTTC CASSLGGGEGASEQFF TRBV7-6*01 TRBJ2-1*01 21.0 1144.0 CAVCGSAWGGEVIC_CASSLGGGEGASEQFF 1 3463 EBNA3A-193-201 EBV 0.67 1022 NEG 222 3241 10 EBV EBNA3A FLRGRAYGL effector memory T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-B*08:01 B2M MHCI -6385 chip0423_835638 7.13 10.54 Chip2 T1D_6 T1D TGTGCCGTGATCCTTAATTCAGGAAACACACCTCTTGTCTTT CAVILNSGNTPLVF TRAV12-2*01 TRAJ29*01 2.0 84.0 TGTGCCATCGGGAGGCCCCCAGATACGCAGTATTTT CAIGRPPDTQYF TRBV10-3*01 TRBJ2-3*01 14.0 867.0 CAVILNSGNTPLVF_CAIGRPPDTQYF 1 6925 ROTA-VP6 ROTA 0.81 47 ROTA-VP6 206 6719 7 RotavirusA VP6 TLLANVTAV transitional T cells between effector and memory populations PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*02:01 B2M MHCI -6386 chip0423_681153 -1.62 9.08 Chip2 T1D_4 T1D TGTGCAATGATCCTATCTAACTTTGGAAATGAGAAATTAACCTTT CAMILSNFGNEKLTF TRAV12-3*01 TRAJ48*01 172.0 5351.0 TGTGCCAGCAGTCCCTTTATGAACACTGAAGCTTTCTTT CASSPFMNTEAFF TRBV28*01 TRBJ1-1*01 46.0 2090.0 CAMILSNFGNEKLTF_CASSPFMNTEAFF 1 8538 PGT-178 PGT 0.79 1480 PGT-178 192 8346 3 HomoSapiens PGT LLAGIGTVPI Naive T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*02:01 B2M MHCI -6387 chip0423_748332 14.78 10.12 Chip2 T1D_5 T1D TGTGCAATGAGAGAGGGCGAGGCTGGAGGCTTCAAAACTATCTTT CAMREGEAGGFKTIF TRAV14/DV4*01 TRAJ9*01 58.0 2168.0 TGTGCCAGCAGCTTAGGGGGGACAGGGTTCCAGCCCCAGCATTTT CASSLGGTGFQPQHF TRBV7-9*01 TRBJ1-5*01 55.0 1540.0 CAMREGEAGGFKTIF_CASSLGGTGFQPQHF 3 3841 BZLF1-190-197 EBV 0.57 2156 BZLF1-190-197 195 3646 12 EBV BZLF1 RAKFKQLL effector T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-B*08:01 B2M MHCI -6388 chip0423_184753 9.6 9.51 Chip2 T1D_6 T1D TGCAGCGCCGGCAGGGACGGGACTAATGAAAAACTGTTTTTT CSAGRDGTNEKLFF TRBV29-1*01 TRBJ1-4*01 105.0 5381.0 _CSAGRDGTNEKLFF 159 7059 EBV-BLMF1 EBV 0.67 2531 NEG 224 6835 8 EBV BLMF1 GLCTLVAML effector memory T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*02:01 B2M MHCI -6389 chip0423_420797 12.3 7.24 Chip2 T1D_4 T1D TGCCTCGTGGGTGACATAAGGAACCTACAAATACATCTTT CLVGDIag??gaTYKYIF TRAV4*01 TRAJ40*01 1.0 70.0 CLVGDIag??gaTYKYIF_ 1 5317 BZLF1-190-197 EBV 0.63 2156 BZLF1-190-197 224 5093 10 EBV BZLF1 RAKFKQLL effector memory T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-B*08:01 B2M MHCI -6390 chip0423_587708 12.05 6.65 Chip2 T1D_5 T1D TGTGCCAGCAGCTCGTTGGGACAGAGAGAGACCCAGTACTTC CASSSLGQRETQYF TRBV7-9*01 TRBJ2-5*01 26.0 1280.0 _CASSSLGQRETQYF 1 4082 BZLF1-190-197 EBV 0.76 2156 NEG 267 3815 10 EBV BZLF1 RAKFKQLL effector memory T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-B*08:01 B2M MHCI -6391 chip0423_477267 6.06 14.05 Chip2 T1D_6 T1D TGCGGCACAGAGCCGGATAATAATGCAGGCAACATGCTCACCTTT CGTEPDNNAGNMLTF TRAV30*01 TRAJ39*01 44.0 1731.0 TGTGCCAGTAGTATATATAGCATCAATGAGCAGTTCTTC CASSIYSINEQFF TRBV19*01 TRBJ2-1*01 11.0 339.0 CGTEPDNNAGNMLTF_CASSIYSINEQFF 1 5128 M1 FLU 0.44 1250 NEG 235 4893 7 InfluenzaA M1 GILGFVFTL transitional T cells between effector and memory populations PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*02:01 B2M MHCI -6392 chip0423_78484 10.11 7.86 Chip2 T1D_4 T1D TGTGCCAGCAGCCAAGTCAACAACCCGGGGGATGGCTACACCTTC CASSQVNNPGDGYTF TRBV14*01 TRBJ1-2*01 43.0 1252.0 _CASSQVNNPGDGYTF 94 5308 EBNA3A-158-166 EBV 0.55 444 EBNA3A-158-166 223 5085 10 EBV EBNA3A QAKWRLQTL effector memory T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-B*08:01 B2M MHCI -6393 chip0423_22692 9.93 10.83 Chip2 T1D_6 T1D TGCAGCGTGGGGACAGGGGGCACTAATGAAAAACTGTTTTTT CSVGTGGTNEKLFF TRBV29-1*01 TRBJ1-4*01 4.0 84.0 _CSVGTGGTNEKLFF 638 5023 EBV-BLMF1 EBV 0.57 2531 NEG 204 4819 9 EBV BLMF1 GLCTLVAML effector memory T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*02:01 B2M MHCI -6394 chip0423_598567 11.79 8.46 Chip2 T1D_4 T1D TGTGCCAGCAGCTTAGCGGTCGGAGAAGGGCCCCAGCATTTT CASSLAVGEGPQHF TRBV7-9*01 TRBJ1-5*01 38.0 1535.0 _CASSLAVGEGPQHF 113 3781 BZLF1-190-197 EBV 0.98 2156 BZLF1-190-197 215 3566 10 EBV BZLF1 RAKFKQLL effector memory T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-B*08:01 B2M MHCI -6395 chip0423_550486 12.32 7.25 Chip2 T1D_6 T1D TGCATCCTCCCACTTGCTGGTGGTACTAGCTATGGAAAGCTGACATTT CILPLAGGTSYGKLTF TRAV26-2*01 TRAJ52*01 32.0 1185.0 TGTGCCAGCAGCTTGGGACAGGCCTACGAGCAATACTTC CASSLGQAYEQYF TRBV7-8*01 TRBJ2-7*01 21.0 1129.0 CILPLAGGTSYGKLTF_CASSLGQAYEQYF 308 5289 EBNA3A-193-201 EBV 0.9 1022 EBNA3A-193-201 224 5065 10 EBV EBNA3A FLRGRAYGL effector memory T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-B*08:01 B2M MHCI -6396 chip0423_340390 15.79 10.19 Chip2 T1D_6 T1D TGTGCCAGCCGCGTTCGCGGGGCCCCCTACGAGCAGTACTTC CASRVRGAPYEQYF TRBV9*01 TRBJ2-7*01 5.0 505.0 _CASRVRGAPYEQYF 1 3587 EBNA3A-193-201 EBV 0.6 1022 NEG 216 3371 12 EBV EBNA3A FLRGRAYGL effector T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-B*08:01 B2M MHCI -6397 chip0423_268295 15.02 12.82 Chip2 T1D_5 T1D TGTGCAGCGGCGGAAACCTCCTACGACAAGGTGATATTT CAAAETSYDKVIF TRAV13-1*01 TRAJ50*01 34.0 3981.0 TGTGCCAGCCAACTAGCGGGAGGCACCGGGGAGCTGTTTTTT CASQLAGGTGELFF TRBV24-1*01 TRBJ2-2*01 7.0 182.0 CAAAETSYDKVIF_CASQLAGGTGELFF 131 1921 BZLF1-190-197 EBV 0.83 2156 NEG 205 1716 12 EBV BZLF1 RAKFKQLL effector T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-B*08:01 B2M MHCI -6398 chip0423_555546 6.26 11.84 Chip2 healthy_3 healthy TGTGCCAGTAGTATTCGTAGCACCGGGGAGCTGTTTTTT CASSIRSTGELFF TRBV19*01 TRBJ2-2*01 1.0 62.0 _CASSIRSTGELFF 2 7421 M1 FLU 0.74 1250 M1 172 7249 7 InfluenzaA M1 GILGFVFTL transitional T cells between effector and memory populations PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*02:01 B2M MHCI -6399 chip0423_787630 11.37 6.7 Chip2 T1D_5 T1D TGTGCCAGCAGCCCTCTGGGGAGTAAGGCCGGGGAGCTGTTTTTT CASSPLGSKAGELFF TRBV7-9*01 TRBJ2-2*01 22.0 645.0 _CASSPLGSKAGELFF 2 5489 BZLF1-190-197 EBV 0.69 2156 NEG 241 5248 10 EBV BZLF1 RAKFKQLL effector memory T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-B*08:01 B2M MHCI -6400 chip0423_789387 -1.23 10.39 Chip2 T1D_5 T1D TGTGCAGAGTCCGGCACCGACAAGCTCATCTTT CAESGTDKLIF TRAV13-2*01 TRAJ34*01 16.0 2033.0 TGTGCCAGCAGCTTAGTCGGGGCCGGCGAGCAGTACTTC CASSLVGAGEQYF TRBV7-9*01 TRBJ2-7*01 16.0 1081.0 CAESGTDKLIF_CASSLVGAGEQYF 1 6022 GFAP-HLK-8 GFAP 0.71 28 NEG 186 5836 3 HomoSapiens GFAP HLKRNIVV Naive T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-B*08:01 B2M MHCI -6401 chip0423_518241 -2.42 12.46 Chip2 T1D_5 T1D TGTGCCAGCAGCCCCCTAAGTATGGGGGACTATGGCTACACCTTC CASSPLSMGDYGYTF TRBV4-2*01 TRBJ1-2*01 29.0 1737.0 _CASSPLSMGDYGYTF 1 5472 G6PC2-LTS-10 IGRP 0.87 59 G6PC2-LTS-10 218 5254 1 HomoSapiens G6PC2 LTSLTILQLY Naive T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*01:01 B2M MHCI -6402 chip0423_191303 13.4 6.78 Chip2 T1D_5 T1D _ 6746 4738 BZLF1-190-197 EBV 0.43 2156 NEG 223 4515 10 EBV BZLF1 RAKFKQLL effector memory T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-B*08:01 B2M MHCI -6403 chip0423_621272 -2.66 10.39 Chip2 T1D_6 T1D TGTGCAATGAGCGGGGGCAAACTAATCTTT CAMSGGKLIF TRAV12-3*01 TRAJ37*01 2.0 33.0 TGCAGTGCTAGTCAGACAGGGGCTACCTACGAGCAGTACTTC CSASQTGATYEQYF TRBV20-1*01 TRBJ2-7*01 13.0 970.0 CAMSGGKLIF_CSASQTGATYEQYF 1 5341 PTPRN-805-813 PTPRN 0.71 11 NEG 206 5135 3 HomoSapiens PTPRN VIVMLTPLV Naive T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*02:01 B2M MHCI -6404 chip0423_785487 12.8 6.4 Chip2 T1D_6 T1D TGTGCAGCAAGCAAGATAGAGGAGGAGGTGCTGACGGACTCACCTTT CAASKIEga?GGADGLTF TRAV23/DV6*01 TRAJ45*01 69.0 2358.0 TGTGCCAGCAGGGTCGACAGGGGTTACCTACGAGCAGTACTTC CASRVDR??gVTYEQYF TRBV2*01 TRBJ2-7*01 16.0 971.0 CAASKIEga?GGADGLTF_CASRVDR??gVTYEQYF 1 7393 EBNA3A-193-201 EBV 0.68 1022 EBNA3A-193-201 237 7156 10 EBV EBNA3A FLRGRAYGL effector memory T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-B*08:01 B2M MHCI -6405 chip0423_118075 -1.02 10.61 Chip2 T1D_4 T1D TGCAGTGCTAGAGATCCGAGAGCGGATGCGGCCGTC CSARDPRADAAV TRBV20-1*01 TRBJ1-2*01 5.0 32.0 _CSARDPRADAAV 1 4937 PGT-178 PGT 0.5 1480 NEG 218 4719 3 HomoSapiens PGT LLAGIGTVPI Naive T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*02:01 B2M MHCI -6406 chip0423_564357 -0.1 6.91 Chip2 T1D_6 T1D TGCGCTGTGCCTGCGGGGGCAGAGCTGCCCCGTTCCTCTTT CAVPAGgc?RAAPFLF TRAV8-3*01 TRAJ30*01 2.0 85.0 TGTGCCAGCAGCCAAGTCGGGGTCCCGCCCGGCTACACCTTC CASSQVGVPPGYTF TRBV28*01 TRBJ1-2*01 9.0 461.0 CAVPAGgc?RAAPFLF_CASSQVGVPPGYTF 1 9879 PGT-178 PGT 0.64 1480 PGT-178 199 9680 3 HomoSapiens PGT LLAGIGTVPI Naive T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*02:01 B2M MHCI -6407 chip0423_449116 11.71 7.08 Chip2 T1D_6 T1D TGTGCCAGCAGCTTGGGACAGGCCTACGAGCAGTACTTC CASSLGQAYEQYF TRBV7-8*01 TRBJ2-7*01 38.0 1675.0 _CASSLGQAYEQYF 175 5572 EBNA3A-193-201 EBV 0.47 1022 EBNA3A-193-201 220 5352 10 EBV EBNA3A FLRGRAYGL effector memory T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-B*08:01 B2M MHCI -6408 chip0423_769668 10.84 6.59 Chip2 T1D_5 T1D TGCAGCGTCTCAGCGGGGGAGGATGGTGAGCAGTTCTTC CSVSAGEDGEQFF TRBV29-1*01 TRBJ2-1*01 147.0 13135.0 _CSVSAGEDGEQFF 2 7897 BZLF1-190-197 EBV 0.58 2156 BZLF1-190-197 194 7703 10 EBV BZLF1 RAKFKQLL effector memory T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-B*08:01 B2M MHCI -6409 chip0423_485878 -2.32 11.54 Chip2 T1D_6 T1D TGTGCCAGCAGCCAATTAATGGGAAACACCATATATTTT CASSQLMGNTIYF TRBV14*01 TRBJ1-3*01 9.0 156.0 _CASSQLMGNTIYF 1 5281 ZNT8-173-181 ZNT8 0.6 27 NEG 177 5104 4 HomoSapiens ZNT8 IQATVMIIV Naive T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*02:01 B2M MHCI -6410 chip0423_485416 4.99 9.61 Chip2 T1D_4 T1D TGTGCCTATGGTCAGAATTTCGTCTTT CAYGQNFVF TRAV8-3*01 TRAJ26*01 22.0 2375.0 TGTGCCAGCAGCGCAGACAGCGATTATGGCTACACCTTC CASSADSDYGYTF TRBV9*01 TRBJ1-2*01 30.0 1240.0 CAYGQNFVF_CASSADSDYGYTF 8 4214 EBV-LMP1-1 EBV 0.88 237 NEG 223 3991 6 EBV LMP1 YLLEMLWRL central memory T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*02:01 B2M MHCI -6411 chip0423_460136 13.47 8.17 Chip2 T1D_4 T1D TTCACCGACAGAGAGGGAGGAGGTGCTGACGGGCTCACCTTT FTDREGGGADGLTF TRAV26-1*01 TRAJ45*01 7.0 318.0 TGTGCCAGCAGCTTAGCGGTCGGAGAAGGGCCCCAGCATTTT CASSLAVGEGPQHF TRBV7-9*01 TRBJ1-5*01 13.0 562.0 FTDREGGGADGLTF_CASSLAVGEGPQHF 1 3719 BZLF1-190-197 EBV 0.9 2156 BZLF1-190-197 200 3519 10 EBV BZLF1 RAKFKQLL effector memory T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-B*08:01 B2M MHCI -6412 chip0423_258668 7.72 13.84 Chip2 T1D_6 T1D TGTGCCAGCAGCTTAGCGGGTCGTGAGGGTACGCAGTATTTT CASSLAGREGTQYF TRBV11-3*01 TRBJ2-3*01 12.0 618.0 _CASSLAGREGTQYF 13 3515 NP380-388 FLU 0.53 60 NEG 188 3327 7 InfluenzaA NP ELRSRYWAI transitional T cells between effector and memory populations PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-B*08:01 B2M MHCI -6413 chip0423_122523 -1.17 9.97 Chip2 T1D_5 T1D TGTGCCAGTAGTATGGACGGGAACACTGAAGCTTTCTTT CASSMDGNTEAFF TRBV19*01 TRBJ1-1*01 24.0 1388.0 _CASSMDGNTEAFF 1 7169 INS-GSH-9 INS 0.52 19 INS-GSH-9 198 6971 3 HomoSapiens INS GSHLVEALY Naive T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*01:01 B2M MHCI -6414 chip0423_14618 7.82 10.17 Chip2 T1D_6 T1D TGCATCCTCCCACTTGCTGGTGGTACTAGCTATGGAAAGCTGACATTT CILPLAGGTSYGKLTF TRAV26-2*01 TRAJ52*01 12.0 384.0 TGTGCCAGCAGCTTGGGACAGGCCTACGAGCAGTACTTC CASSLGQAYEQYF TRBV7-8*01 TRBJ2-7*01 28.0 1601.0 CILPLAGGTSYGKLTF_CASSLGQAYEQYF 308 5990 EBNA3A-193-201 EBV 0.64 1022 EBNA3A-193-201 199 5791 8 EBV EBNA3A FLRGRAYGL effector memory T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-B*08:01 B2M MHCI -6415 chip0423_656661 15.35 9.14 Chip2 T1D_5 T1D TGTGCTAGTGGTCCGGACATATCCTACTCCTACGAGCAGTACTTC CASGPDISYSYEQYF TRBV12-5*01 TRBJ2-7*01 19.0 863.0 _CASGPDISYSYEQYF 10 2766 BZLF1-190-197 EBV 0.9 2156 NEG 218 2548 12 EBV BZLF1 RAKFKQLL effector T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-B*08:01 B2M MHCI -6416 chip0423_834059 -2.81 10.7 Chip2 T1D_6 T1D TGTGCAATGGGAGGGGACTATCAGTTAATCTGG CAMGGDYQLIW TRAV12-3*01 TRAJ33*01 53.0 5951.0 TGTGCCAGCAGCTTAATTGCCGGGGAGCTGTTTTTT CASSLIAGELFF TRBV7-3*01 TRBJ2-2*01 14.0 605.0 CAMGGDYQLIW_CASSLIAGELFF 1 4989 PGT-178 PGT 0.67 1480 PGT-178 198 4791 2 HomoSapiens PGT LLAGIGTVPI Naive T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*02:01 B2M MHCI -6417 chip0423_314263 11.27 6.29 Chip2 T1D_4 T1D TGTGCCAGCAGTTTCCTAAGGGGTAGCAATCAGCCCCAGCATTTT CASSFLRGSNQPQHF TRBV28*01 TRBJ1-5*01 66.0 2699.0 _CASSFLRGSNQPQHF 2 6210 EBV-BRLF1 EBV 0.89 1264 NEG 223 5987 10 EBV BRLF1 YVLDHLIVV effector memory T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*02:01 B2M MHCI -6418 chip0423_346882 13.67 9.58 Chip2 T1D_6 T1D TGCATCGCCGTTACCTCGTCCCGGTAACCCGTTCTCTTTT CIAVTStc??ccGNPFSF TRAV26-1*01 TRAJ49*01 14.0 1022.0 TGCAGCGCCGGCAGGGACGGGACTAATGAAAAACTGTTTTTT CSAGRDGTNEKLFF TRBV29-1*01 TRBJ1-4*01 84.0 4171.0 CIAVTStc??ccGNPFSF_CSAGRDGTNEKLFF 1 3626 EBV-BLMF1 EBV 0.5 2531 NEG 204 3422 12 EBV BLMF1 GLCTLVAML effector T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*02:01 B2M MHCI -6419 chip0423_195516 -2.16 9.96 Chip2 T1D_6 T1D TGTGCCGTGGGACCGTATTCAGGAGGAGGTGCTGACGGCCTCACCTTT CAVGPYSGGGADGLTF TRAV12-2*01 TRAJ45*01 31.0 1047.0 CAVGPYSGGGADGLTF_ 1 5445 MART1-A28L MART1 0.81 84 MART1-A28L 186 5259 3 HomoSapiens MART1 ALGIGILTV Naive T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*02:01 B2M MHCI -6420 chip0423_59801 13.58 8.79 Chip2 T1D_4 T1D TGCATCGTCAGAGTCGTGTGTACGGCACTGCCAGTCACCTCACCTTT CIVRVVCac?GTASHLTF TRAV26-1*01 TRAJ44*01 38.0 1989.0 TGTGCCAGCAGCTTAGCGGTCGGAGAAGGGCCCCAGCATTTT CASSLAVGEGPQHF TRBV7-9*01 TRBJ1-5*01 53.0 2241.0 CIVRVVCac?GTASHLTF_CASSLAVGEGPQHF 1 2876 BZLF1-190-197 EBV 0.74 2156 BZLF1-190-197 194 2682 10 EBV BZLF1 RAKFKQLL effector memory T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-B*08:01 B2M MHCI -6421 chip0423_794871 -1.67 7.84 Chip2 T1D_6 T1D TGTGTGGTGATATCGAATTCTGGGGGTTACCAGAAAGTTACCTTT CVVISNSGGYQKVTF TRAV12-1*01 TRAJ13*01 77.0 2764.0 TGCGCCAGCAGCGGCAGGGCGGACACCGGGGAGCTGCTTTTT CASSGRADTGELLF TRBV5-1*01 TRBJ2-2*01 43.0 3172.0 CVVISNSGGYQKVTF_CASSGRADTGELLF 1 9359 HCVNS3-1073-1081 HCV 0.5 36 NEG 215 9144 3 HCV NS3 CINGVCWTV Naive T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*02:01 B2M MHCI -6422 chip0423_753272 8.35 9.27 Chip2 T1D_5 T1D TGTGCCAGCAGCTGGCTCGGGGATCGGTATAATTCACCCCTCCACTTT CASSWLGDRYNSPLHF TRBV7-9*01 TRBJ1-6*01 58.0 2310.0 _CASSWLGDRYNSPLHF 44 8353 BZLF1-190-197 EBV 0.7 2156 BZLF1-190-197 214 8139 8 EBV BZLF1 RAKFKQLL effector memory T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-B*08:01 B2M MHCI -6423 chip0423_37080 7.9 10.81 Chip2 T1D_6 T1D _ 6746 7306 EBNA3A-158-166 EBV 0.93 444 NEG 222 7084 7 EBV EBNA3A QAKWRLQTL transitional T cells between effector and memory populations PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-B*08:01 B2M MHCI -6424 chip0423_390088 15.74 9.81 Chip2 T1D_6 T1D TGCATCCTCCCACTTGCTGGTGGTACTAGCTATGGAAAGCTGACATTT CILPLAGGTSYGKLTF TRAV26-2*01 TRAJ52*01 49.0 2023.0 CILPLAGGTSYGKLTF_ 55 5553 EBNA3A-193-201 EBV 0.92 1022 NEG 195 5358 12 EBV EBNA3A FLRGRAYGL effector T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-B*08:01 B2M MHCI -6425 chip0423_130826 8.8 12.51 Chip2 T1D_4 T1D TGTGCAGCAATGGAAACCTCCTACGACAAGGTGATATTT CAAMETSYDKVIF TRAV13-1*01 TRAJ50*01 1.0 42.0 TGTGCCACCAGTGATTTGGGAGGGAAAGAAGCTTTCTTT CATSDLGGKEAFF TRBV24-1*01 TRBJ1-1*01 28.0 1122.0 CAAMETSYDKVIF_CATSDLGGKEAFF 1 3926 BZLF1-190-197 EBV 0.59 2156 BZLF1-190-197 194 3732 7 EBV BZLF1 RAKFKQLL transitional T cells between effector and memory populations PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-B*08:01 B2M MHCI -6426 chip0423_574311 5.61 8.95 Chip2 T1D_6 T1D TGCATCCCCCCACTTGCTGGTGGTGCTGGCTATGGAAAGCTGACATTT CIPPLAGGAGYGKLTF TRAV26-2*01 TRAJ52*01 61.0 2014.0 TGTGCCAGCAGCTTGGGACAGGCCTACGAGCAGTACTTC CASSLGQAYEQYF TRBV7-8*01 TRBJ2-7*01 45.0 2011.0 CIPPLAGGAGYGKLTF_CASSLGQAYEQYF 1 3919 EBNA3A-193-201 EBV 0.81 1022 NEG 231 3688 6 EBV EBNA3A FLRGRAYGL central memory T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-B*08:01 B2M MHCI -6427 chip0423_474893 8.62 11.42 Chip2 T1D_4 T1D TGTGCCGTGATTTTGTTCGTCCTGATGGATAGCAGCTATAAATTGATCTTC CAVILFVLMDSSYKLIF TRAV12-2*01 TRAJ12*01 44.0 1328.0 TGTGCCAGCAGCTTAGCGGCTTCGGCAGGGGGCCCGGTATCAGGCGAGCAGTACTTC CASSLAASAGGPVSGEQYF TRBV7-8*01 TRBJ2-7*01 9.0 440.0 CAVILFVLMDSSYKLIF_CASSLAASAGGPVSGEQYF 1 6025 EBNA3A-193-201 EBV 0.57 1022 NEG 214 5811 7 EBV EBNA3A FLRGRAYGL transitional T cells between effector and memory populations PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-B*08:01 B2M MHCI -6428 chip0423_257175 5.86 13.09 Chip2 T1D_4 T1D TGTGCAGCCGCTTATGGAGGAAGCCAAGGAAATCTCGTCTTT CAAAYGGSQGNLVF TRAV25*01 TRAJ42*01 23.0 638.0 TGTGCCAGTAGTACTCGGAGCACAGATACGCAGTATTTT CASSTRSTDTQYF TRBV19*01 TRBJ2-3*01 38.0 1189.0 CAAAYGGSQGNLVF_CASSTRSTDTQYF 1 7989 M1 FLU 0.67 1250 M1 221 7768 7 InfluenzaA M1 GILGFVFTL transitional T cells between effector and memory populations PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*02:01 B2M MHCI -6429 chip0423_251020 10.53 7.04 Chip2 T1D_4 T1D TGTGCAGCAAGTGAGGACGCCAGACTCATGTTT CAASEDARLMF TRAV13-1*01 TRAJ31*01 25.0 2108.0 TGTGCCAGCAGCTTCCCTTTTCAGAGCTATGGCTACACCTTC CASSFPFQSYGYTF TRBV7-9*01 TRBJ1-2*01 24.0 986.0 CAASEDARLMF_CASSFPFQSYGYTF 2 8250 BZLF1-190-197 EBV 0.73 2156 BZLF1-190-197 236 8014 10 EBV BZLF1 RAKFKQLL effector memory T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-B*08:01 B2M MHCI -6430 chip0423_165727 -2.71 12.51 Chip2 T1D_6 T1D TGTGCTAGGGCGGGGGCTGGGAGTTACCAACTCACTTTC CARAGAGSYQLTF TRAV17*01 TRAJ28*01 33.0 1998.0 TGTGCCATCAGCCCGGAAGACAGGGTCCAAGAGACCCAGTACTTC CAISPEDRVQETQYF TRBV10-3*01 TRBJ2-5*01 71.0 2271.0 CARAGAGSYQLTF_CAISPEDRVQETQYF 1 4617 ZNT8-153-161 ZNT8 0.5 41 NEG 216 4401 1 HomoSapiens ZNT8 VVTGVLVYL Naive T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*02:01 B2M MHCI -6431 chip0423_590618 15.21 11.19 Chip2 T1D_5 T1D TGTGCAGCTCAGGAAACCTCCTACGACAAGGTGATATTT CAAQETSYDKVIF TRAV13-1*01 TRAJ50*01 26.0 1378.0 TGTGCCAGCACCCAGGTAGACAGACCCAACTATGGCTACACCTTC CASTQVDRPNYGYTF TRBV7-9*01 TRBJ1-2*01 28.0 1026.0 CAAQETSYDKVIF_CASTQVDRPNYGYTF 17 2954 BZLF1-190-197 EBV 0.57 2156 NEG 186 2768 12 EBV BZLF1 RAKFKQLL effector T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-B*08:01 B2M MHCI -6432 chip0423_200385 -2.1 8.05 Chip2 T1D_6 T1D TGTGCTGGGGGGGCCCTTAACGACTACAAGCTCAACTTT CAGGALNDYKLNF TRAV8-3*01 TRAJ20*01 1.0 66.0 TGTGCCACCCGGGGACAGGGCTACGAGCAGTACTTC CATRGQGYEQYF TRBV30*01 TRBJ2-7*01 32.0 2209.0 CAGGALNDYKLNF_CATRGQGYEQYF 1 8865 ROTA-VP2-1 ROTA 0.5 17 NEG 174 8691 3 RotavirusA VP2 SLISGMWLL Naive T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*02:01 B2M MHCI -6433 chip0423_615331 12.24 6.53 Chip2 healthy_3 healthy TGTGCCGGTCCCTCGGGGGGAGGGAAGCTTATCTTC CAGPSGGGKLIF TRAV12-2*01 TRAJ23*01 29.0 2534.0 TGTGCCAGTAGTATTAGCGCGCTGGGGCAGCCCCAGCATTTT CASSISALGQPQHF TRBV19*01 TRBJ1-5*01 1.0 14.0 CAGPSGGGKLIF_CASSISALGQPQHF 1 3984 PGT-178 PGT 0.63 1480 PGT-178 211 3773 10 HomoSapiens PGT LLAGIGTVPI effector memory T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*02:01 B2M MHCI -6434 chip0423_752666 13.37 6.75 Chip2 T1D_5 T1D TGTGCTCTGACCACTAGGATAACACCGCCCCGCTCTTCTTT CALTTRat?NTAPLFF TRAV19*01 TRAJ34*01 12.0 851.0 TGTGCCAGCAGCGGACCTAAACTGTTCGCGAACACCGGGGAGCTGTTTTTT CASSGPKLFANTGELFF TRBV11-2*01 TRBJ2-2*01 132.0 3965.0 CALTTRat?NTAPLFF_CASSGPKLFANTGELFF 1 4895 BZLF1-190-197 EBV 0.6 2156 NEG 227 4668 10 EBV BZLF1 RAKFKQLL effector memory T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-B*08:01 B2M MHCI -6435 chip0423_227752 15.66 10.28 Chip2 T1D_5 T1D CTGTGCCGCGGCGGAAACCTCCTACGACAAGGTGATATTT LCRGGNct??ccYDKVIF TRAV13-1*01 TRAJ50*01 21.0 2020.0 TGTGCCAGCCAACTAGCGGGAGGCACCGGGGAGCTGTTTTTT CASQLAGGTGELFF TRBV24-1*01 TRBJ2-2*01 60.0 4441.0 LCRGGNct??ccYDKVIF_CASQLAGGTGELFF 1 3898 BZLF1-190-197 EBV 0.46 2156 NEG 201 3697 12 EBV BZLF1 RAKFKQLL effector T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-B*08:01 B2M MHCI -6436 chip0423_594430 -1.17 7.8 Chip2 T1D_5 T1D TGAGTCGAGACCCTCCAGAATTATAACCAGGCCGGAAGGCCTATCTTC *VETLQNYNQAGRPIF TRAV12-1*01 TRAJ23*01 7.0 399.0 TGTGCCAGTGAGGACAGGGGTGGGTACGAGCAGTACTTC CASEDRGGYEQYF TRBV19*01 TRBJ2-7*01 38.0 2240.0 *VETLQNYNQAGRPIF_CASEDRGGYEQYF 1 7058 NP44-52 FLU 0.72 474 NP44-52 188 6870 3 InfluenzaA NP CTELKLSDY Naive T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*01:01 B2M MHCI -6437 chip0423_367738 -0.62 9.19 Chip2 T1D_5 T1D _ 6746 8794 EBNA3A-158-166 EBV 0.72 444 EBNA3A-158-166 175 8619 3 EBV EBNA3A QAKWRLQTL Naive T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-B*08:01 B2M MHCI -6438 chip0423_610695 11.81 7.29 Chip2 T1D_4 T1D TGTGCTGTCAATTCAGGAAACACACCTCTTGTCTTT CAVNSGNTPLVF TRAV1-2*01 TRAJ29*01 30.0 2544.0 TGTGCCAGCAGCCAAGTCAACAACCCGGGGGATGGCTACACCTTC CASSQVNNPGDGYTF TRBV14*01 TRBJ1-2*01 26.0 721.0 CAVNSGNTPLVF_CASSQVNNPGDGYTF 31 5903 EBNA3A-158-166 EBV 0.91 444 NEG 231 5672 10 EBV EBNA3A QAKWRLQTL effector memory T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-B*08:01 B2M MHCI -6439 chip0423_195711 14.21 9.83 Chip2 T1D_5 T1D TGTGCAGCAAGCGAACATAACCAGTTCTATTTT CAASEHNQFYF TRAV13-1*01 TRAJ49*01 68.0 5705.0 TGTGCCAGCAGTTTTCCTAGTCTTCATACGCAGTATTTT CASSFPSLHTQYF TRBV12-3*01,TRBV12-4*01 TRBJ2-3*01 65.0 4032.0 CAASEHNQFYF_CASSFPSLHTQYF 3 4373 BZLF1-190-197 EBV 0.65 2156 NEG 216 4157 12 EBV BZLF1 RAKFKQLL effector T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-B*08:01 B2M MHCI -6440 chip0423_364228 -0.21 6.48 Chip2 T1D_6 T1D TGTGCTGTGAGTCCACGGTTTTCAGATGGCCAGAAGCTGCTCTTT CAVSPRFSDGQKLLF TRAV3*01 TRAJ16*01 10.0 514.0 TGCGCCAGCAGCCAAGATCGGACCGAGGCTCACTACGAGCAGTACTTC CASSQDRTEAHYEQYF TRBV4-1*01 TRBJ2-7*01 13.0 779.0 CAVSPRFSDGQKLLF_CASSQDRTEAHYEQYF 1 10512 EBNA3A-158-166 EBV 0.84 444 EBNA3A-158-166 206 10306 3 EBV EBNA3A QAKWRLQTL Naive T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-B*08:01 B2M MHCI -6441 chip0423_96610 11.77 7.13 Chip2 T1D_4 T1D TGTGCCAGCAGTCTACACAGGACACTACTCTCTGGAAACACCATATATTTT CASSLHRTLLSGNTIYF TRBV28*01 TRBJ1-3*01 55.0 1821.0 _CASSLHRTLLSGNTIYF 2 4848 EBNA3A-158-166 EBV 0.75 444 NEG 200 4648 10 EBV EBNA3A QAKWRLQTL effector memory T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-B*08:01 B2M MHCI -6442 chip0423_349106 5.21 10.68 Chip2 healthy_4 healthy TGTGCTACTCTTTCGGTCTCTATTGGCGACCATAGTAAGCTCAAATTT CATLSVSIGDHSKLKF TRAV17*01 TRAJ56*01 5.0 162.0 TGTGCCAGTAGTATGATGGGTTCGGGCTACAATGAAGCAGTTCTT CASSMMGSGYNEAVL TRBV19*01 TRBJ2-1*01 22.0 1322.0 CATLSVSIGDHSKLKF_CASSMMGSGYNEAVL 1 5752 M1 FLU 1.0 1250 NEG 209 5543 6 InfluenzaA M1 GILGFVFTL central memory T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*02:01 B2M MHCI -6443 chip0423_265867 9.45 11.3 Chip2 T1D_4 T1D TGTGCAATGAGCGAGGACGGCTTT CAMSEDGF TRAV12-3*01 TRAJ37*01,TRAJ11*01 3.0 16.0 TGTGCCAGCAGCCCGGGACCCAACACTGAAGCTTTCTTT CASSPGPNTEAFF TRBV4-2*01 TRBJ1-1*01 49.0 2380.0 CAMSEDGF_CASSPGPNTEAFF 11 4727 BZLF1-190-197 EBV 1.0 2156 NEG 225 4502 9 EBV BZLF1 RAKFKQLL effector memory T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-B*08:01 B2M MHCI -6444 chip0423_545023 -2.06 7.56 Chip2 T1D_6 T1D TGTGCCAGCAGCGGATCCAACAGGGAGACCCAGCATTTT CASSGSNRETQHF TRBV28*01 TRBJ1-5*01 30.0 1130.0 _CASSGSNRETQHF 1 7768 ZNT8-VTD-9 ZNT8 0.72 65 ZNT8-VTD-9 193 7575 3 HomoSapiens ZNT8 VTDAAHLLI Naive T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*01:01 B2M MHCI -6445 chip0423_441641 9.0 11.03 Chip2 T1D_4 T1D TGTGCAGAGAACGCCAGATACTCTGGGGCTGGGAGTTACCAACTCACTTTC CAENARYSGAGSYQLTF TRAV13-2*01 TRAJ28*01 54.0 1551.0 TGCGCCGACGGCTTGGCGCGGGGGCTTCCCTACGAGCAGTGCTTC CADGLARGLPYEQCF TRBV5-1*01 TRBJ2-7*01 5.0 200.0 CAENARYSGAGSYQLTF_CADGLARGLPYEQCF 1 7092 EBNA3A-158-166 EBV 0.88 444 EBNA3A-158-166 217 6875 9 EBV EBNA3A QAKWRLQTL effector memory T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-B*08:01 B2M MHCI -6446 chip0423_52750 11.58 10.86 Chip2 T1D_5 T1D TGTGCCAGCCAACTAGCGGGAGGCACCGGGGAGCTGTTTTTT CASQLAGGTGELFF TRBV24-1*01 TRBJ2-2*01 1.0 52.0 _CASQLAGGTGELFF 69 2648 BZLF1-190-197 EBV 0.82 2156 NEG 200 2448 9 EBV BZLF1 RAKFKQLL effector memory T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-B*08:01 B2M MHCI -6447 chip0423_777745 9.07 8.2 Chip2 T1D_4 T1D TGCAGCGTGGGGACAGGGGACACTAATGAAAAACTGTCTTTT CSVGTGDTNEKLSF TRBV29-1*01 TRBJ1-4*01 1.0 18.0 _CSVGTGDTNEKLSF 1 4251 EBNA3A-158-166 EBV 0.8 444 NEG 207 4044 8 EBV EBNA3A QAKWRLQTL effector memory T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-B*08:01 B2M MHCI -6448 chip0423_38823 8.12 11.73 Chip2 T1D_5 T1D TGTGCAGCGGCGGAAACCTCCTACGACAAGGTGATATTT CAAAETSYDKVIF TRAV13-1*01 TRAJ50*01 68.0 3626.0 TGTGCCAGCCAACTAGCGGGAGGCACCGGGGAGCTGTTTTTT CASQLAGGTGELFF TRBV24-1*01 TRBJ2-2*01 56.0 2972.0 CAAAETSYDKVIF_CASQLAGGTGELFF 131 5023 BZLF1-190-197 EBV 0.77 2156 NEG 236 4787 7 EBV BZLF1 RAKFKQLL transitional T cells between effector and memory populations PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-B*08:01 B2M MHCI -6449 chip0423_787732 10.93 6.65 Chip2 T1D_4 T1D TGTGCTGTGAGCGCCACGACGTGGGCTGCCAAGATCATCTTT CAVSATTWAAKIIF TRAV3*01 TRAJ30*01 49.0 2149.0 TGTGCCAGCAGCTTAGGAGGGGGAGAGGGGGCCAGTGAGCAGTTCTTC CASSLGGGEGASEQFF TRBV7-6*01 TRBJ2-1*01 13.0 756.0 CAVSATTWAAKIIF_CASSLGGGEGASEQFF 1 6662 EBNA3A-193-201 EBV 0.61 1022 EBNA3A-193-201 231 6431 10 EBV EBNA3A FLRGRAYGL effector memory T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-B*08:01 B2M MHCI -6450 chip0423_677112 5.03 10.42 Chip2 T1D_5 T1D TGCAGCGTCTGGGGAGAGACCCAGTACTTC CSVWGETQYF TRBV29-1*01 TRBJ2-5*01 175.0 18159.0 _CSVWGETQYF 1 5198 EBNA3A-158-166 EBV 0.79 444 EBNA3A-158-166 190 5008 6 EBV EBNA3A QAKWRLQTL central memory T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-B*08:01 B2M MHCI -6451 chip0423_88608 12.52 6.96 Chip2 T1D_6 T1D TGCATCCTCCCACTTGCTGGTGGTACTAGCTATGGAAAGCTGACATTT CILPLAGGTSYGKLTF TRAV26-2*01 TRAJ52*01 111.0 5543.0 TGTGCCAGCAGCTTGGGACAGGCCTACGAGCAGTACTTC CASSLGQAYEQYF TRBV7-8*01 TRBJ2-7*01 5.0 252.0 CILPLAGGTSYGKLTF_CASSLGQAYEQYF 308 4478 EBNA3A-193-201 EBV 0.83 1022 EBNA3A-193-201 224 4254 10 EBV EBNA3A FLRGRAYGL effector memory T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-B*08:01 B2M MHCI -6452 chip0423_582757 15.49 10.34 Chip2 T1D_5 T1D TGTGCAGCAAGGGAAACCTCCTACGACAAGGTGATATTT CAARETSYDKVIF TRAV13-1*01 TRAJ50*01 27.0 1541.0 TGTGCCAGCAGCCCATTGGGCACAGCCGACTCTGGAAACACCATATATTTT CASSPLGTADSGNTIYF TRBV11-1*01 TRBJ1-3*01 21.0 585.0 CAARETSYDKVIF_CASSPLGTADSGNTIYF 4 4827 BZLF1-190-197 EBV 0.6 2156 NEG 204 4623 12 EBV BZLF1 RAKFKQLL effector T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-B*08:01 B2M MHCI -6453 chip0423_134207 14.59 10.18 Chip2 T1D_4 T1D TGTGCCAGCAGCTTAGCGGTCGGAGAAGGGCCCCAGCATTTT CASSLAVGEGPQHF TRBV7-9*01 TRBJ1-5*01 66.0 2580.0 _CASSLAVGEGPQHF 113 2807 BZLF1-190-197 EBV 0.81 2156 NEG 197 2610 12 EBV BZLF1 RAKFKQLL effector T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-B*08:01 B2M MHCI -6454 chip0423_7863 13.88 10.49 Chip2 T1D_4 T1D TGCATCGTCAGAGAGGGAGGAGGTGCTGACGGACTCACCTTT CIVREGGGADGLTF TRAV26-1*01 TRAJ45*01 80.0 4626.0 TGTGCCAGCAGCTTAGCGGTCGGAGAAGGGCCCCAGCATTTT CASSLAVGEGPQHF TRBV7-9*01 TRBJ1-5*01 50.0 2116.0 CIVREGGGADGLTF_CASSLAVGEGPQHF 68 5685 BZLF1-190-197 EBV 0.84 2156 BZLF1-190-197 221 5464 12 EBV BZLF1 RAKFKQLL effector T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-B*08:01 B2M MHCI -6455 chip0423_837707 9.41 10.14 Chip2 T1D_4 T1D TGTGCTCTCGTGAATTATGGAGGAAGCCAAGGAAATCTCATCTTT CALVNYGGSQGNLIF TRAV19*01 TRAJ42*01 85.0 2893.0 TGTGCCGTCTGGAGGGACGGAGCCTACGAGCAGTACTTC CAVWRDGAYEQYF TRBV28*01 TRBJ2-7*01 26.0 1467.0 CALVNYGGSQGNLIF_CAVWRDGAYEQYF 13 6692 EBV-LMP1-1 EBV 0.67 237 NEG 225 6467 9 EBV LMP1 YLLEMLWRL effector memory T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*02:01 B2M MHCI -6456 chip0423_156154 9.33 7.71 Chip2 T1D_4 T1D TGTGCCAGCAGCTTAGCGGTCGGAGAAGGGCCCCAGCATTTT CASSLAVGEGPQHF TRBV7-9*01 TRBJ1-5*01 22.0 902.0 _CASSLAVGEGPQHF 113 6425 BZLF1-190-197 EBV 0.92 2156 BZLF1-190-197 198 6227 8 EBV BZLF1 RAKFKQLL effector memory T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-B*08:01 B2M MHCI -6457 chip0423_18046 13.21 8.37 Chip2 T1D_5 T1D TGTGTGGCGAAAGAAACCTCCTACGACAAGGTGATATTT CVAKETSYDKVIF TRAV12-1*01 TRAJ50*01 60.0 5307.0 TGTGCCAGCAGCGCCCTCGGGGGCCGCGGAGATACGCAGTATTTT CASSALGGRGDTQYF TRBV7-9*01 TRBJ2-3*01 49.0 2910.0 CVAKETSYDKVIF_CASSALGGRGDTQYF 2 3710 BZLF1-190-197 EBV 0.91 2156 BZLF1-190-197 209 3501 10 EBV BZLF1 RAKFKQLL effector memory T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-B*08:01 B2M MHCI -6458 chip0423_1023 12.92 7.27 Chip2 T1D_5 T1D TGTGCCAGCAGCTCCCTCGGACAGAAGAACACTGAAGCTTTCTTT CASSSLGQKNTEAFF TRAV36/DV7*01 TRAJ40*01 2.0 11.0 TGTGCCAGCAGCTCCCTCGGACAGAAGAACACTGAAGCTTTCTTT CASSSLGQKNTEAFF TRBV7-9*01 TRBJ1-1*01 80.0 3264.0 CASSSLGQKNTEAFF_CASSSLGQKNTEAFF 2 4224 BZLF1-190-197 EBV 0.77 2156 BZLF1-190-197 193 4031 10 EBV BZLF1 RAKFKQLL effector memory T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-B*08:01 B2M MHCI -6459 chip0423_664017 11.77 6.85 Chip2 T1D_6 T1D TGTGCTACGGAGGGCGCTTCAGGATACAGCACCCTCACCTTT CATEGASGYSTLTF TRAV17*01 TRAJ11*01 137.0 6629.0 CATEGASGYSTLTF_ 8 5628 EBV-LMP2-FLY EBV 0.58 355 NEG 222 5406 10 EBV LMP2 FLYALALLL effector memory T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*02:01 B2M MHCI -6460 chip0423_241275 11.16 6.62 Chip2 T1D_5 T1D _ 6746 7773 BZLF1-190-197 EBV 0.93 2156 NEG 204 7569 10 EBV BZLF1 RAKFKQLL effector memory T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-B*08:01 B2M MHCI -6461 chip0423_245218 9.42 8.81 Chip2 T1D_4 T1D TGTGCCCCTTCTCTGAATTCTGGGGGTTACCAGAAAGTTACCTTT CAPSLNSGGYQKVTF TRAV2*01 TRAJ13*01 9.0 237.0 TGTGCAGCAACTGAGACCTCCTACGACAAGGTGATATTT CAATETSYDKVIF TRAV13-1*01 TRAJ50*01 4.0 21.0 0.2 TGTGCCAGCAGTGTAGTAGGGGGCGACTATGGCTACACCTTC CASSVVGGDYGYTF TRBV2*01 TRBJ1-2*01 49.0 2848.0 CAPSLNSGGYQKVTF_CASSVVGGDYGYTF 5 6469 EBNA3A-193-201 EBV 0.54 1022 EBNA3A-193-201 213 6256 8 EBV EBNA3A FLRGRAYGL effector memory T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-B*08:01 B2M MHCI -6462 chip0423_751905 13.07 7.57 Chip2 T1D_5 T1D TGTGCAGCAAGCGAAACCTCCTACGACCAGGTGATATCT CAASETSYDQVIS TRAV13-1*01 TRAJ50*01 12.0 999.0 TGTGCCAGCAGTTTAGGGGACAGGGGAGAGGGCTACACCTTC CASSLGDRGEGYTF TRBV12-3*01,TRBV12-4*01 TRBJ1-2*01 26.0 1051.0 CAASETSYDQVIS_CASSLGDRGEGYTF 1 3250 BZLF1-190-197 EBV 0.78 2156 NEG 238 3012 10 EBV BZLF1 RAKFKQLL effector memory T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-B*08:01 B2M MHCI -6463 chip0423_484701 14.58 8.16 Chip2 T1D_6 T1D TGCATCCTCCCACTTGCTGGTGGTACTAGCTATGGGAAGCTGACATTT CILPLAGGTSYGKLTF TRAV26-2*01 TRAJ52*01 15.0 171.0 TGTGCCAGCAGCTTGGGACAGGCCTACGAGCAGTACTTC CASSLGQAYEQYF TRBV7-8*01 TRBJ2-7*01 26.0 1033.0 CILPLAGGTSYGKLTF_CASSLGQAYEQYF 308 4030 EBNA3A-193-201 EBV 0.64 1022 EBNA3A-193-201 270 3760 10 EBV EBNA3A FLRGRAYGL effector memory T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-B*08:01 B2M MHCI -6464 chip0423_867772 13.82 11.09 Chip2 T1D_5 T1D TGTGCAGAGATGGAAACCTCCTACGACAAGGTGATATTT CAEMETSYDKVIF TRAV13-2*01 TRAJ50*01 23.0 1094.0 TGTGCCAGCAGCTCCTTAAGCGGGGGGGCAGGAAATGAGCAGTTCTTC CASSSLSGGAGNEQFF TRBV7-9*01 TRBJ2-1*01 39.0 1989.0 CAEMETSYDKVIF_CASSSLSGGAGNEQFF 27 2960 BZLF1-190-197 EBV 0.69 2156 NEG 204 2756 9 EBV BZLF1 RAKFKQLL effector memory T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-B*08:01 B2M MHCI -6465 chip0423_577449 14.46 10.74 Chip2 T1D_5 T1D TGTGCCAGCAGCTTATTAGGACGATCGAACACTGAAGCTTTCTTT CASSLLGRSNTEAFF TRBV7-9*01 TRBJ1-1*01 31.0 784.0 _CASSLLGRSNTEAFF 8 3732 BZLF1-190-197 EBV 0.4 2156 NEG 187 3545 12 EBV BZLF1 RAKFKQLL effector T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-B*08:01 B2M MHCI -6466 chip0423_370560 14.5 11.9 Chip2 T1D_6 T1D TGCATCCTCCCACTTGCTGGTGGTACTAGCTATGGAAAGCTGACATTT CILPLAGGTSYGKLTF TRAV26-2*01 TRAJ52*01 1.0 19.0 TGTGCCAGCAGCTTGGGACAGGCCTACGAGCAGTACTTC CASSLGQAYEQYF TRBV7-8*01 TRBJ2-7*01 25.0 1303.0 CILPLAGGTSYGKLTF_CASSLGQAYEQYF 308 2637 EBNA3A-193-201 EBV 0.85 1022 NEG 203 2434 12 EBV EBNA3A FLRGRAYGL effector T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-B*08:01 B2M MHCI -6467 chip0423_126003 -1.56 8.37 Chip2 T1D_5 T1D TGTGCCGTCGCTACCTTTTCTTCTGGTTCTGCAAGGCAACTGACCTTT CAVATFSSGSARQLTF TRAV12-2*01 TRAJ22*01 42.0 2007.0 TGCGCCAGCAGCGAAAGGGGGGCCTTCACAGATACGCAGTATTTT CASSERGAFTDTQYF TRBV5-1*01 TRBJ2-3*01 24.0 1547.0 CAVATFSSGSARQLTF_CASSERGAFTDTQYF 1 7731 ZNT8-YAK-9 ZNT8 0.72 59 ZNT8-YAK-9 206 7525 3 HomoSapiens ZNT8 YAKWKLCSA Naive T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-B*08:01 B2M MHCI -6468 chip0423_656550 10.38 8.12 Chip2 T1D_6 T1D TGTGCCAGCAGCTTGGGACAGGCCTACGAGCAGTACTTC CASSLGQAYEQYF TRBV7-8*01 TRBJ2-7*01 32.0 1721.0 _CASSLGQAYEQYF 175 5668 EBNA3A-193-201 EBV 0.6 1022 EBNA3A-193-201 197 5471 10 EBV EBNA3A FLRGRAYGL effector memory T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-B*08:01 B2M MHCI -6469 chip0423_245469 11.33 6.72 Chip2 T1D_4 T1D TGCATCCTCCCTCTTGCTGGTGGTACTAGCTATGGAAAGCTGACATTT CILPLAGGTSYGKLTF TRAV26-2*01 TRAJ52*01 57.0 2847.0 TGTGCCAGCAGCTTAGGTCAAGCCTACGAGCAGTACTTC CASSLGQAYEQYF TRBV7-8*01 TRBJ2-7*01 31.0 1372.0 CILPLAGGTSYGKLTF_CASSLGQAYEQYF 308 6881 EBNA3A-193-201 EBV 0.47 1022 NEG 204 6677 10 EBV EBNA3A FLRGRAYGL effector memory T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-B*08:01 B2M MHCI -6470 chip0423_182245 8.14 11.11 Chip2 T1D_4 T1D TGTGCCGTGAATGTGGACACCGGTAACCAGTTCTATTTT CAVNVDTGNQFYF TRAV8-1*01 TRAJ49*01 26.0 1827.0 TGCAGCGGACTAGCGGGAGCAGGTGAGCAGTTCTTC CSGLAGAGEQFF TRBV29-1*01 TRBJ2-1*01 43.0 3120.0 CAVNVDTGNQFYF_CSGLAGAGEQFF 4 6888 BZLF1-190-197 EBV 1.0 2156 NEG 191 6697 7 EBV BZLF1 RAKFKQLL transitional T cells between effector and memory populations PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-B*08:01 B2M MHCI -6471 chip0423_495161 7.39 11.66 Chip2 T1D_6 T1D TGTGCCAGCAGTTTCCAGGGTGGCAACTATGGCTACACCTTC CASSFQGGNYGYTF TRBV6-5*01 TRBJ1-2*01 47.0 3185.0 _CASSFQGGNYGYTF 1 6118 EBV-LMP2-FLY EBV 0.71 355 NEG 217 5901 7 EBV LMP2 FLYALALLL transitional T cells between effector and memory populations PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*02:01 B2M MHCI -6472 chip0423_818671 13.71 9.11 Chip2 T1D_6 T1D TGTGCAGCAAGCACGCTCGCGGAGGAGGTGCTGACGGCCTCACCTTT CAASTLAga?GGADGLTF TRAV23/DV6*01 TRAJ45*01 10.0 404.0 TGTGCCAGCAGCTTGGGACAGGCCTACGAGCAGTACTTC CASSLGQAYEQYF TRBV7-8*01 TRBJ2-7*01 15.0 551.0 CAASTLAga?GGADGLTF_CASSLGQAYEQYF 1 6172 EBNA3A-193-201 EBV 0.74 1022 EBNA3A-193-201 238 5934 12 EBV EBNA3A FLRGRAYGL effector T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-B*08:01 B2M MHCI -6473 chip0423_575621 11.31 6.86 Chip2 T1D_4 T1D _ 6746 7334 EBV-LMP2-FLY EBV 0.56 355 NEG 236 7098 6 EBV LMP2 FLYALALLL central memory T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*02:01 B2M MHCI -6474 chip0423_126711 -1.61 12.08 Chip2 T1D_6 T1D TGTGCAATGAGTATATCTAACTTTGGAAATGAGAAATTAACCTTT CAMSISNFGNEKLTF TRAV12-3*01 TRAJ48*01 120.0 4882.0 TGTGCCATCAGTGACGCGCGGACAGGGGAAAGGACCGACCAGACTTACACTGAAGCTTTCTTT CAISDARTGERTDQTYTEAFF TRBV10-3*01 TRBJ1-1*01 138.0 4240.0 CAMSISNFGNEKLTF_CAISDARTGERTDQTYTEAFF 1 6058 PGT-178 PGT 0.81 1480 PGT-178 203 5855 1 HomoSapiens PGT LLAGIGTVPI Naive T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*02:01 B2M MHCI -6475 chip0423_748179 8.89 9.03 Chip2 T1D_6 T1D TGCATCCTCCCACTTGCTGGTGGTACTAGCTATGGAAAGCTGACATTT CILPLAGGTSYGKLTF TRAV26-2*01 TRAJ52*01 22.0 1104.0 TGTGCCAGCAGCTTGGGACAGGCCTACGAGCAGTACTTC CASSLGQAYEQYF TRBV7-8*01 TRBJ2-7*01 15.0 606.0 CILPLAGGTSYGKLTF_CASSLGQAYEQYF 308 6851 EBNA3A-193-201 EBV 0.68 1022 EBNA3A-193-201 222 6629 8 EBV EBNA3A FLRGRAYGL effector memory T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-B*08:01 B2M MHCI -6476 chip0423_623427 15.34 10.36 Chip2 T1D_5 T1D TGTGCCATGAGAGTAGGGAAAGGGTTACCAGAAAGTTACCTTT CAMRVGK??gGYQKVTF TRAV14/DV4*01 TRAJ13*01 33.0 1949.0 CAMRVGK??gGYQKVTF_ 1 3482 BZLF1-190-197 EBV 0.5 2156 NEG 224 3258 12 EBV BZLF1 RAKFKQLL effector T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-B*08:01 B2M MHCI -6477 chip0423_349310 15.28 9.15 Chip2 T1D_5 T1D TGTGCACTGTGTGTGGGGGCGTCCCGTGCTTCCAATCTAATCGTT CALCVGASRASNLIV TRAV14/DV4*01 TRAJ3*01 17.0 719.0 TGCAGCGTTGGAACAAGCTATGGCTACACCTTC CSVGTSYGYTF TRBV29-1*01 TRBJ1-2*01 82.0 6184.0 CALCVGASRASNLIV_CSVGTSYGYTF 1 5922 BZLF1-190-197 EBV 0.75 2156 NEG 225 5697 12 EBV BZLF1 RAKFKQLL effector T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-B*08:01 B2M MHCI -6478 chip0423_881423 7.3 12.06 Chip2 T1D_6 T1D TGTGCCTCCCAAGGAGGAAGCCAAGGAAATCTCATCTTT CASQGGSQGNLIF TRAV20*01 TRAJ42*01 35.0 2050.0 TGTGCCAGCGGCTTAGGAGGACAGACAGCGACCCAGTACTTC CASGLGGQTATQYF TRBV13*01 TRBJ2-5*01 2.0 264.0 CASQGGSQGNLIF_CASGLGGQTATQYF 1 5151 ROTA-VP6 ROTA 0.78 47 NEG 207 4944 7 RotavirusA VP6 TLLANVTAV transitional T cells between effector and memory populations PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*02:01 B2M MHCI -6479 chip0423_765494 10.89 10.45 Chip2 T1D_4 T1D TGTGCCAGCAGCTTAACGGTTCTGGCAGGTCCAAACACTGAAGCTTTCTTT CASSLTVLAGPNTEAFF TRBV7-3*01 TRBJ1-1*01 14.0 451.0 _CASSLTVLAGPNTEAFF 32 5999 BZLF1-190-197 EBV 0.87 2156 BZLF1-190-197 202 5797 9 EBV BZLF1 RAKFKQLL effector memory T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-B*08:01 B2M MHCI -6480 chip0423_563259 11.8 7.07 Chip2 T1D_4 T1D TGTGCCAGCAGGGCTTTGAGCGGGGGGGCGTCTGAGCAGTTCTTC CASRALSGGASEQFF TRBV6-1*01 TRBJ2-1*01 49.0 3292.0 _CASRALSGGASEQFF 1 6688 EBV-BRLF1 EBV 0.82 1264 NEG 229 6459 10 EBV BRLF1 YVLDHLIVV effector memory T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*02:01 B2M MHCI -6481 chip0423_398269 13.36 10.08 Chip2 T1D_4 T1D TGTTCCGTGGCGGTCATCGACACGCTCGTGTTT CSVAVIDTLVF TRAV8-1*01 TRAJ34*01 15.0 1973.0 CSVAVIDTLVF_ 1 3898 EBV-BRLF1 EBV 0.66 1264 EBV-BRLF1 211 3687 12 EBV BRLF1 YVLDHLIVV effector T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*02:01 B2M MHCI -6482 chip0423_523331 13.0 10.2 Chip2 T1D_4 T1D TGTGCCAGCAGCTTAGCGGTCGGAGAAGGGCCCCAGCATTTT CASSLAVGEGPQHF TRBV7-9*01 TRBJ1-5*01 42.0 2362.0 _CASSLAVGEGPQHF 113 5814 BZLF1-190-197 EBV 0.85 2156 BZLF1-190-197 202 5612 9 EBV BZLF1 RAKFKQLL effector memory T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-B*08:01 B2M MHCI -6483 chip0423_625262 14.88 11.57 Chip2 T1D_5 T1D TGTGCAGCTCAGGAAACCTCCTACGACAAGGTGATATTT CAAQETSYDKVIF TRAV13-1*01 TRAJ50*01 9.0 750.0 TGTGCTGTGAGGGTGGGTCTTTGGAAATGAGAAATTAACCTTT CAVRVGL??tGNEKLTF TRAV21*01 TRAJ48*01 20.0 782.0 0.61 TGTGCCAGCACCCAGGTAGACAGACCCAACTATGGCTACACCTTC CASTQVDRPNYGYTF TRBV7-9*01 TRBJ1-2*01 7.0 312.0 CAAQETSYDKVIF_CASTQVDRPNYGYTF 17 2843 BZLF1-190-197 EBV 0.44 2156 NEG 236 2607 12 EBV BZLF1 RAKFKQLL effector T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-B*08:01 B2M MHCI -6484 chip0423_311656 11.4 6.37 Chip2 T1D_6 T1D TGTGCCAGCAGCTTGGGACAGGCCTACGAGCAGTACTTC CASSLGQAYEQYF TRBV7-8*01 TRBJ2-7*01 7.0 538.0 _CASSLGQAYEQYF 175 5699 EBNA3A-193-201 EBV 0.5 1022 EBNA3A-193-201 215 5484 10 EBV EBNA3A FLRGRAYGL effector memory T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-B*08:01 B2M MHCI -6485 chip0423_605086 0.28 8.77 Chip2 T1D_6 T1D TGTGCCAGCAGACCACAGGGGGGGACTGAAGCTTTCTTT CASRPQGGTEAFF TRAV3*01 TRAJ40*01 1.0 12.0 TGTGCCAGCAGACCACAGGGGGGGACTGAAGCTTTCTTT CASRPQGGTEAFF TRBV9*01 TRBJ1-1*01 30.0 1192.0 CASRPQGGTEAFF_CASRPQGGTEAFF 1 5837 ZNT8-PTE-9 ZNT8 0.76 18 ZNT8-PTE-9 180 5657 4 HomoSapiens ZNT8 PTEKGANEY Naive T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*01:01 B2M MHCI -6486 chip0423_501628 -3.66 11.53 Chip2 T1D_6 T1D TGTGCAATGAGCGTATCTAACTTTGGAAATGAGAAATTAACCTTT CAMSVSNFGNEKLTF TRAV12-3*01 TRAJ48*01 50.0 1193.0 CAMSVSNFGNEKLTF_ 2 4560 PGT-178 PGT 0.75 1480 NEG 199 4361 1 HomoSapiens PGT LLAGIGTVPI Naive T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*02:01 B2M MHCI -6487 chip0423_494500 11.68 7.02 Chip2 T1D_6 T1D TGCATCCTCCCACTTGCTGGTGGTACTAGCTATGGAAAGCTGACATTT CILPLAGGTSYGKLTF TRAV26-2*01 TRAJ52*01 48.0 2346.0 TGTGCCAGCAGCTTGGGACAGGCCTACGAGCAGTACTTC CASSLGQAYEQYF TRBV7-8*01 TRBJ2-7*01 7.0 232.0 CILPLAGGTSYGKLTF_CASSLGQAYEQYF 308 6241 EBNA3A-193-201 EBV 0.55 1022 NEG 223 6018 10 EBV EBNA3A FLRGRAYGL effector memory T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-B*08:01 B2M MHCI -6488 chip0423_240455 13.13 7.36 Chip2 T1D_4 T1D TGTGCCAGCAGCCAAGTCAACAACCCGGGGGATGGCTACACCTTC CASSQVNNPGDGYTF TRBV14*01 TRBJ1-2*01 15.0 476.0 _CASSQVNNPGDGYTF 94 4803 EBNA3A-158-166 EBV 0.65 444 EBNA3A-158-166 203 4600 10 EBV EBNA3A QAKWRLQTL effector memory T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-B*08:01 B2M MHCI -6489 chip0423_745982 11.18 10.86 Chip2 T1D_6 T1D TGCAGCGCCGGCAGGGACGGGACTAATGAAAAACTGTTTTTT CSAGRDGTNEKLFF TRBV29-1*01 TRBJ1-4*01 118.0 6388.0 _CSAGRDGTNEKLFF 159 4746 EBV-BLMF1 EBV 0.47 2531 NEG 194 4552 9 EBV BLMF1 GLCTLVAML effector memory T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*02:01 B2M MHCI -6490 chip0423_659646 -2.77 8.99 Chip2 T1D_6 T1D TGTGCCGTAATTAACGACTACAAGCTCAGCTTT CAVINDYKLSF TRAV8-1*01 TRAJ20*01 7.0 377.0 TGCAGCTTCAGGGGTAGTTCCGGGGAGCTGTTTTTT CSFRGSSGELFF TRBV29-1*01 TRBJ2-2*01 16.0 434.0 CAVINDYKLSF_CSFRGSSGELFF 1 6473 IAPP-ILK-8 IAPP 0.77 20 NEG 202 6271 2 HomoSapiens IAPP ILKLQVFL Naive T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-B*08:01 B2M MHCI -6491 chip0423_388072 -1.49 8.57 Chip2 T1D_5 T1D TGTGCCAGCAGTGGGGGACTTAATTCACCCCTCCACTTT CASSGGLNSPLHF TRAV14/DV4*01 TRAJ11*01 3.0 13.0 TGTGCCAGCAGTGGGGGACTTAATTCACCCCTCCACTTT CASSGGLNSPLHF TRBV2*01 TRBJ1-6*01 56.0 3760.0 CASSGGLNSPLHF_CASSGGLNSPLHF 1 9090 GAD2-VSA-10 GAD65 0.83 21 GAD2-VSA-10 155 8935 3 HomoSapiens GAD2 VSATAGTTVY Naive T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*01:01 B2M MHCI -6492 chip0423_255327 11.04 10.71 Chip2 T1D_4 T1D TGCATCGTCAGAGAGGGGGGGGGTGCTGACGGACTCACCTTT CIVREGGGADGLTF TRAV26-1*01 TRAJ45*01 48.0 1981.0 TGTGCCAGCAGCTTAGCGGTCGGAGAAGGGCCCCAGCATTTT CASSLAVGEGPQHF TRBV7-9*01 TRBJ1-5*01 142.0 3397.0 CIVREGGGADGLTF_CASSLAVGEGPQHF 68 3429 BZLF1-190-197 EBV 0.95 2156 BZLF1-190-197 218 3211 9 EBV BZLF1 RAKFKQLL effector memory T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-B*08:01 B2M MHCI -6493 chip0423_76711 11.62 11.61 Chip2 T1D_4 T1D TCCAACGTCACCGCGGGCGGAGTTGCTGACGGCCCCCCCTTT SNVTAGGVADGPPF TRAV26-1*01 TRAJ45*01 10.0 90.0 TGTGCCAGCAGCTTAGCGGTCGGAGAAGGGCCCCAGCATTTT CASSLAVGEGPQHF TRBV7-9*01 TRBJ1-5*01 53.0 2269.0 SNVTAGGVADGPPF_CASSLAVGEGPQHF 1 3675 BZLF1-190-197 EBV 0.83 2156 BZLF1-190-197 224 3451 9 EBV BZLF1 RAKFKQLL effector memory T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-B*08:01 B2M MHCI -6494 chip0423_578830 11.24 9.66 Chip2 T1D_4 T1D _ 6746 4984 BZLF1-190-197 EBV 0.53 2156 NEG 216 4768 9 EBV BZLF1 RAKFKQLL effector memory T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-B*08:01 B2M MHCI -6495 chip0423_452387 11.39 6.34 Chip2 healthy_4 healthy TGCGCCAGCAGCTCGGACGGCATGAACACTGAAGCTTTCTTT CASSSDGMNTEAFF TRBV10-2*01 TRBJ1-1*01 33.0 1319.0 _CASSSDGMNTEAFF 10 9423 EBV-LMP2A EBV 0.92 700 EBV-LMP2A 251 9172 10 EBV LMP2A CLGGLLTMV effector memory T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*02:01 B2M MHCI -6496 chip0423_471173 10.84 9.96 Chip2 T1D_5 T1D TGTGCCAGCAGTCCCCCGGGGAGAAATGAAAAACTGTTTTTT CASSPPGRNEKLFF TRBV12-3*01,TRBV12-4*01 TRBJ1-4*01 40.0 1744.0 _CASSPPGRNEKLFF 11 4611 BZLF1-190-197 EBV 0.59 2156 NEG 211 4400 9 EBV BZLF1 RAKFKQLL effector memory T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-B*08:01 B2M MHCI -6497 chip0423_685838 -3.08 9.92 Chip2 T1D_5 T1D _ 6746 4784 BZLF1-190-197 EBV 0.58 2156 BZLF1-190-197 180 4604 2 EBV BZLF1 RAKFKQLL Naive T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-B*08:01 B2M MHCI -6498 chip0423_222643 -1.13 8.47 Chip2 T1D_6 T1D TGTGCAATGACGTTATCTAACTTTGGAAATGAGAAATTAACCTTT CAMTLSNFGNEKLTF TRAV12-3*01 TRAJ48*01 2.0 98.0 TGTGCCAGCAGTTTTTCCGGGACAGGGGCCGGCTACACCTTC CASSFSGTGAGYTF TRBV12-3*01,TRBV12-4*01 TRBJ1-2*01 24.0 1723.0 CAMTLSNFGNEKLTF_CASSFSGTGAGYTF 1 7232 PGT-178 PGT 0.63 1480 PGT-178 212 7020 4 HomoSapiens PGT LLAGIGTVPI Naive T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*02:01 B2M MHCI -6499 chip0423_610434 -2.58 7.81 Chip2 T1D_4 T1D TGTGCTTTCATGAAGCAATCCTATGGTCAGAATTTTGTCTTT CAFMKQSYGQNFVF TRAV38-1*01 TRAJ26*01 17.0 598.0 TGTGCCCGCAGCTTGGTAGGCAGGGAGGCGTACGAGCAGTACTTC CARSLVGREAYEQYF TRBV5-6*01 TRBJ2-7*01 20.0 749.0 CAFMKQSYGQNFVF_CARSLVGREAYEQYF 1 7322 PREINS-6-14 INS 0.67 20 NEG 166 7156 2 HomoSapiens PREINS RLLPLLALL Naive T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*02:01 B2M MHCI -6500 chip0423_832378 12.03 7.07 Chip2 T1D_6 T1D TGTGCCAGCAGCTTGGGACAGGCCTACGAGCAGTACTTC CASSLGQAYEQYF TRBV7-8*01 TRBJ2-7*01 23.0 1434.0 _CASSLGQAYEQYF 175 5794 EBNA3A-193-201 EBV 0.86 1022 EBNA3A-193-201 252 5542 10 EBV EBNA3A FLRGRAYGL effector memory T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-B*08:01 B2M MHCI -6501 chip0423_789173 11.73 9.66 Chip2 T1D_4 T1D TGTGCCAGCAGCTTAGCGGTTCTGGCAGGTCCAAACACTGAAGCTTTCTTT CASSLAVLAGPNTEAFF TRBV7-3*01 TRBJ1-1*01 12.0 273.0 _CASSLAVLAGPNTEAFF 1 5145 BZLF1-190-197 EBV 0.53 2156 BZLF1-190-197 201 4944 10 EBV BZLF1 RAKFKQLL effector memory T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-B*08:01 B2M MHCI -6502 chip0423_656021 11.65 6.27 Chip2 T1D_5 T1D TGTGCCAGCAGCCCTCTTGGGAGCCATGAAAAACTGTTTTTT CASSPLGSHEKLFF TRAV36/DV7*01 TRAJ5*01 5.0 12.0 TGTGCCAGCAGCCCTCTTGGGAGCAATGAAAAACTGTTTTTT CASSPLGSNEKLFF TRBV7-9*01 TRBJ1-4*01 136.0 4704.0 CASSPLGSHEKLFF_CASSPLGSNEKLFF 2 6676 BZLF1-190-197 EBV 0.92 2156 NEG 261 6415 10 EBV BZLF1 RAKFKQLL effector memory T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-B*08:01 B2M MHCI -6503 chip0423_752169 11.36 11.78 Chip2 T1D_4 T1D TGTGCTGTGAGTGATGGAGAAGGAGCCCAGAAGCTGGTATTT CAVSDGEGAQKLVF TRAV8-6*01 TRAJ54*01 75.0 3896.0 TGTGCCAGCAGCTTAACGGTTCTGGCAGGTCCAAACACTGAAGCTTTCTTT CASSLTVLAGPNTEAFF TRBV7-3*01 TRBJ1-1*01 48.0 1504.0 CAVSDGEGAQKLVF_CASSLTVLAGPNTEAFF 44 2976 BZLF1-190-197 EBV 0.9 2156 BZLF1-190-197 201 2775 9 EBV BZLF1 RAKFKQLL effector memory T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-B*08:01 B2M MHCI -6504 chip0423_710390 -1.59 9.65 Chip2 T1D_4 T1D TGTGCAATGGCTATATCTAACTTTGGAAATGAGAAATTAACCTTT CAMAISNFGNEKLTF TRAV12-3*01 TRAJ48*01 52.0 1668.0 CAMAISNFGNEKLTF_ 2 6055 PGT-178 PGT 0.5 1480 NEG 224 5831 3 HomoSapiens PGT LLAGIGTVPI Naive T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*02:01 B2M MHCI -6505 chip0423_453730 14.48 8.27 Chip2 T1D_5 T1D TGTGTGGCGAAAGAAACCTCCTACGACAAGGTGATATTT CVAKETSYDKVIF TRAV12-1*01 TRAJ50*01 7.0 217.0 TGTGCCAGCAGCGCCCTCGGGGGCCGCGGAGATACGCAGTATTTT CASSALGGRGDTQYF TRBV7-9*01 TRBJ2-3*01 62.0 3915.0 CVAKETSYDKVIF_CASSALGGRGDTQYF 2 3190 BZLF1-190-197 EBV 1.0 2156 BZLF1-190-197 199 2991 12 EBV BZLF1 RAKFKQLL effector T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-B*08:01 B2M MHCI -6506 chip0423_439122 13.24 11.38 Chip2 T1D_6 T1D TGCATCCTCCCACTTGCTGGTGGTACTAGCTATGGAAAGCTGACATTT CILPLAGGTSYGKLTF TRAV26-2*01 TRAJ52*01 54.0 2367.0 TGTGCCAGCAGCTTGGGACAGGCCTACGAGCAGTACTTC CASSLGQAYEQYF TRBV7-8*01 TRBJ2-7*01 37.0 2146.0 CILPLAGGTSYGKLTF_CASSLGQAYEQYF 308 3048 EBNA3A-193-201 EBV 0.82 1022 NEG 224 2824 9 EBV EBNA3A FLRGRAYGL effector memory T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-B*08:01 B2M MHCI -6507 chip0423_351246 -2.46 7.78 Chip2 T1D_6 T1D TGTGCCAGCAGCCAAGATCCGAACGGAATCTATGGCTACACCTTC CASSQDPNGIYGYTF TRBV4-2*01 TRBJ1-2*01 67.0 3518.0 _CASSQDPNGIYGYTF 1 5537 GFAP-LLN-8 GFAP 0.64 6 GFAP-LLN-8 200 5337 2 HomoSapiens GFAP LLNVKLAL Naive T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-B*08:01 B2M MHCI -6508 chip0423_438398 7.19 11.89 Chip2 T1D_6 T1D TGTGCCTCCCAAGGAGGAAGCCAAGGAAATCTCATCTTT CASQGGSQGNLIF TRAV20*01 TRAJ42*01 79.0 4930.0 CASQGGSQGNLIF_ 7 5771 ROTA-VP6 ROTA 0.44 47 ROTA-VP6 215 5556 7 RotavirusA VP6 TLLANVTAV transitional T cells between effector and memory populations PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*02:01 B2M MHCI -6509 chip0423_648974 12.28 8.77 Chip2 T1D_4 T1D TGTGCCAGCAGCCAAGTCAACAACCCGGGGGATGGCTACACCTTC CASSQVNNPGDGYTF TRBV14*01 TRBJ1-2*01 12.0 289.0 _CASSQVNNPGDGYTF 94 2487 EBNA3A-158-166 EBV 0.67 444 NEG 210 2277 10 EBV EBNA3A QAKWRLQTL effector memory T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-B*08:01 B2M MHCI -6510 chip0423_629074 11.95 7.2 Chip2 T1D_5 T1D TGTGCCAGCAGCCCTGGGACTAGCGAAACCGGGGAGCTGTTTTTT CASSPGTSETGELFF TRBV12-3*01,TRBV12-4*01 TRBJ2-2*01 31.0 1452.0 _CASSPGTSETGELFF 2 5130 BZLF1-190-197 EBV 0.52 2156 NEG 209 4921 10 EBV BZLF1 RAKFKQLL effector memory T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-B*08:01 B2M MHCI -6511 chip0423_220822 6.14 12.9 Chip2 healthy_3 healthy TGTGTGGTGAACGGGGAAAATGCCAGACTCATGTTT CVVNGENARLMF TRAV12-1*01 TRAJ31*01 23.0 1669.0 TGTGCCAGCAGTGAAATGTGGGGAGCACCCCTCCACTTT CASSEMWGAPLHF TRBV2*01 TRBJ1-6*01 78.0 4140.0 CVVNGENARLMF_CASSEMWGAPLHF 12 7033 NP44-52 FLU 0.87 474 NP44-52 208 6825 7 InfluenzaA NP CTELKLSDY transitional T cells between effector and memory populations PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*01:01 B2M MHCI -6512 chip0423_130325 8.1 9.41 Chip2 T1D_5 T1D TGTGCAGCGGCGGAAACCTCCTACGACAAGGTGATATTT CAAAETSYDKVIF TRAV13-1*01 TRAJ50*01 2.0 63.0 CAAAETSYDKVIF_ 32 7072 BZLF1-190-197 EBV 0.75 2156 NEG 176 6896 8 EBV BZLF1 RAKFKQLL effector memory T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-B*08:01 B2M MHCI -6513 chip0423_440362 14.84 11.88 Chip2 T1D_5 T1D TGTGCTCTAGATCGTGGAGGCTTCAAAACTATCTTT CALDRGGFKTIF TRAV6*01 TRAJ9*01 25.0 2138.0 TGTGCCAGCAGTTTTGACCTACGGGGGGGGGTGGATGGCTACACCTTC CASSFDLRGGVDGYTF TRBV27*01 TRBJ1-2*01 17.0 913.0 CALDRGGFKTIF_CASSFDLRGGVDGYTF 1 2344 BZLF1-190-197 EBV 0.62 2156 NEG 201 2143 12 EBV BZLF1 RAKFKQLL effector T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-B*08:01 B2M MHCI -6514 chip0423_383888 16.11 10.5 Chip2 T1D_4 T1D TGTGCCAGCAGCTTAAATGGACTAGATGAGCAGTACTTC CASSLNGLDEQYF TRBV7-3*01 TRBJ2-7*01 33.0 1597.0 _CASSLNGLDEQYF 1 3085 BZLF1-190-197 EBV 0.7 2156 NEG 206 2879 12 EBV BZLF1 RAKFKQLL effector T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-B*08:01 B2M MHCI -6515 chip0423_158142 15.14 12.21 Chip2 T1D_6 T1D TGTGCCAGCAGCTTGGGACAGGCCTACGAGCAGTACTTC CASSLGQAYEQYF TRBV7-8*01 TRBJ2-7*01 29.0 1404.0 _CASSLGQAYEQYF 175 2580 EBNA3A-193-201 EBV 0.5 1022 NEG 221 2359 12 EBV EBNA3A FLRGRAYGL effector T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-B*08:01 B2M MHCI -6516 chip0423_596847 6.32 9.48 Chip2 T1D_4 T1D TGTGCCAGCAGCAAACAGGGTGGCGGCTATGGCTACACCTTC CASSKQGGGYGYTF TRBV6-1*01 TRBJ1-2*01 4.0 347.0 _CASSKQGGGYGYTF 2 9898 EBV-LMP2-FLY EBV 1.0 355 NEG 187 9711 6 EBV LMP2 FLYALALLL central memory T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*02:01 B2M MHCI -6517 chip0423_52564 8.81 8.3 Chip2 T1D_5 T1D TGTGCCAGCCAACTAGCGGGAGGCACCGGGGAGCTGTTTTTT CASQLAGGTGELFF TRBV24-1*01 TRBJ2-2*01 3.0 70.0 _CASQLAGGTGELFF 69 6648 BZLF1-190-197 EBV 0.88 2156 NEG 189 6459 8 EBV BZLF1 RAKFKQLL effector memory T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-B*08:01 B2M MHCI -6518 chip0423_55422 11.96 7.16 Chip2 T1D_4 T1D TGTGCTTACAACTGGGGCAAACAACCTCTTCTTT CAYNWgg??caNNLFF TRAV29/DV5*01 TRAJ36*01 1.0 50.0 TGTGCCAGCAGTATGGGAAACGCGTTTGGAAAACTGTTTTTT CASSMGNAFGKLFF TRBV6-1*01 TRBJ1-4*01 32.0 1017.0 CAYNWgg??caNNLFF_CASSMGNAFGKLFF 1 5452 EBNA3A-193-201 EBV 0.64 1022 EBNA3A-193-201 223 5229 10 EBV EBNA3A FLRGRAYGL effector memory T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-B*08:01 B2M MHCI -6519 chip0423_523168 7.06 13.42 Chip2 T1D_6 T1D TGTGCTACGGACGCGCGAAACGACTACAAGCTCAGCTTT CATDARNDYKLSF TRAV17*01 TRAJ20*01 25.0 1479.0 TGTGCCAGCAGCTTAGATGCGGGGTGGTTCGAGACCCAGTACTTC CASSLDAGWFETQYF TRBV11-2*01 TRBJ2-5*01 4.0 240.0 CATDARNDYKLSF_CASSLDAGWFETQYF 1 4571 M1 FLU 0.56 1250 NEG 211 4360 7 InfluenzaA M1 GILGFVFTL transitional T cells between effector and memory populations PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*02:01 B2M MHCI -6520 chip0423_604522 13.22 7.32 Chip2 T1D_4 T1D TGTGCCAGCAGCCTTAGGGGGGGCCAAGAGACCCAGTACTTC CASSLRGGQETQYF TRBV7-3*01 TRBJ2-5*01 18.0 811.0 _CASSLRGGQETQYF 3 5160 BZLF1-190-197 EBV 0.48 2156 NEG 235 4925 10 EBV BZLF1 RAKFKQLL effector memory T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-B*08:01 B2M MHCI -6521 chip0423_546666 -3.47 9.67 Chip2 T1D_4 T1D TGCGCCAGCAGCTACGATTCGGTAAAAGAGACCCAGTACTTC CASSYDSVKETQYF TRBV4-3*01 TRBJ2-5*01 74.0 3314.0 _CASSYDSVKETQYF 1 4941 GAD65-536-545 GAD65 0.64 7 NEG 176 4765 2 HomoSapiens GAD65 RMMEYGTTMV Naive T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*02:01 B2M MHCI -6522 chip0423_119141 9.6 9.33 Chip2 T1D_4 T1D TGTGCCAGCAGCTTAGCGGTCGGAGAAGGGCCCCAGCATTTT CASSLAVGEGPQHF TRBV7-9*01 TRBJ1-5*01 47.0 1586.0 _CASSLAVGEGPQHF 113 6035 BZLF1-190-197 EBV 0.89 2156 BZLF1-190-197 190 5845 8 EBV BZLF1 RAKFKQLL effector memory T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-B*08:01 B2M MHCI -6523 chip0423_152318 13.7 10.16 Chip2 T1D_5 T1D TGTGCAGCGGCGGAAACCTCCTACGACAAGGTGATATTT CAAAETSYDKVIF TRAV13-1*01 TRAJ50*01 8.0 285.0 TGTGCCAGCCAACTAGCGGGAGGCACCGGGGAGCTGTTTTTT CASQLAGGTGELFF TRBV24-1*01 TRBJ2-2*01 8.0 273.0 CAAAETSYDKVIF_CASQLAGGTGELFF 131 5174 BZLF1-190-197 EBV 0.57 2156 NEG 221 4953 12 EBV BZLF1 RAKFKQLL effector T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-B*08:01 B2M MHCI -6524 chip0423_859692 -0.93 10.33 Chip2 T1D_6 T1D TGTGCTGTGCAGCGCTCTTCACCGGACCTACCAACTGTAAACTGACATTT CAVQRSSPg?aPTNCKLTF TRAV22*01 TRAJ53*01 19.0 1759.0 TGTGCCAGCAGCCCCTGGGGCGACGGAGAGACCCAGTACTTC CASSPWGDGETQYF TRBV3-1*01 TRBJ2-5*01 17.0 1259.0 CAVQRSSPg?aPTNCKLTF_CASSPWGDGETQYF 1 5318 M1 FLU 0.75 1250 NEG 194 5124 3 InfluenzaA M1 GILGFVFTL Naive T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*02:01 B2M MHCI -6525 chip0423_622979 -1.35 8.74 Chip2 T1D_5 T1D TGCGCTGTGAGATCCATGGATAGCAACTATCAGTTAATCTGG CAVRSMDSNYQLIW TRAV1-1*01 TRAJ33*01 11.0 510.0 TGTGCCAGCGGGGAGACTGCAACTAATGAAAAACTGTTTTTT CASGETATNEKLFF TRBV6-1*01 TRBJ1-4*01 21.0 622.0 CAVRSMDSNYQLIW_CASGETATNEKLFF 1 6468 INS-LWM-8 INS 0.73 11 INS-LWM-8 191 6277 4 HomoSapiens INS LWMRLLPL Naive T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-B*08:01 B2M MHCI -6526 chip0423_113278 7.0 10.29 Chip2 healthy_4 healthy _ 6746 7773 ZNT8-221-229 ZNT8 0.72 4 NEG 190 7583 7 HomoSapiens ZNT8 ALGDLFQSI transitional T cells between effector and memory populations PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*02:01 B2M MHCI -6527 chip0423_626298 -0.43 7.03 Chip2 T1D_4 T1D TGTGCAGCAACCCCCGTATCTTATAACACCGACAAGCTCATCTTT CAATPVSYNTDKLIF TRAV29/DV5*01 TRAJ34*01 67.0 2473.0 TGTGCCACCCGGGACAGGGGGCGAGGAGAAGGGGGACCCCAGCATTTT CATRDRGRGEGGPQHF TRBV24-1*01 TRBJ1-5*01 21.0 716.0 CAATPVSYNTDKLIF_CATRDRGRGEGGPQHF 1 9572 ZNT8-VTD-9 ZNT8 0.72 65 ZNT8-VTD-9 188 9384 3 HomoSapiens ZNT8 VTDAAHLLI Naive T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*01:01 B2M MHCI -6528 chip0423_213250 7.04 11.65 Chip2 T1D_4 T1D TGTGCTGTGGGTGCCTTCTCTCACTTTGGCCCTGAGAAATTGACCTTT CAVGAFSHFGPEKLTF TRAV8-3*01 TRAJ48*01 2.0 37.0 CAVGAFSHFGPEKLTF_ 1 6555 EBV-LMP1-1 EBV 0.8 237 NEG 170 6385 7 EBV LMP1 YLLEMLWRL transitional T cells between effector and memory populations PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*02:01 B2M MHCI -6529 chip0423_112717 9.52 7.48 Chip2 T1D_4 T1D TGTGCCAGCAGCTTAGCGGTCGGAGAAGGGCCCCAGCATTTT CASSLAVGEGPQHF TRBV7-9*01 TRBJ1-5*01 20.0 691.0 _CASSLAVGEGPQHF 113 7105 BZLF1-190-197 EBV 0.92 2156 BZLF1-190-197 211 6894 8 EBV BZLF1 RAKFKQLL effector memory T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-B*08:01 B2M MHCI -6530 chip0423_832334 14.75 8.61 Chip2 T1D_4 T1D TGTGCTGTCAATTCCGGACACACTCCTCTTGTCTTT CAVNSGHTPLVF TRAV1-2*01 TRAJ29*01 6.0 325.0 TGTGCCAGCAGCCAAGTCAACAACCCGGGGGATGGCTACACCTTC CASSQVNNPGDGYTF TRBV14*01 TRBJ1-2*01 26.0 682.0 CAVNSGHTPLVF_CASSQVNNPGDGYTF 2 3628 EBNA3A-158-166 EBV 0.68 444 EBNA3A-158-166 199 3429 12 EBV EBNA3A QAKWRLQTL effector T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-B*08:01 B2M MHCI -6531 chip0423_234698 15.89 10.76 Chip2 T1D_5 T1D TGTGCCGTGTCAAACTGGGATAGCAGCTATAAATTGATCTTC CAVSNWDSSYKLIF TRAV12-2*01 TRAJ12*01 2.0 82.0 TGTGCCAGCTCCCAGTTGGGGGGGGTTTACAATGAGCAGTTCTTC CASSQLGGVYNEQFF TRBV7-9*01 TRBJ2-1*01 40.0 3284.0 CAVSNWDSSYKLIF_CASSQLGGVYNEQFF 1 1906 BZLF1-190-197 EBV 0.83 2156 BZLF1-190-197 206 1700 12 EBV BZLF1 RAKFKQLL effector T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-B*08:01 B2M MHCI -6532 chip0423_668412 8.94 9.28 Chip2 T1D_5 T1D TGTGCCAGCAGCCCGACAGGGGAGCTTTATGGCTACACCTTC CASSPTGELYGYTF TRBV2*01 TRBJ1-2*01 41.0 1923.0 _CASSPTGELYGYTF 1 3754 BZLF1-190-197 EBV 0.56 2156 NEG 209 3545 8 EBV BZLF1 RAKFKQLL effector memory T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-B*08:01 B2M MHCI -6533 chip0423_745790 -1.22 8.07 Chip2 healthy_3 healthy TGTGCAATGAGCGGATCTAACTTTGGAAATGAGAAATTAACCTTT CAMSGSNFGNEKLTF TRAV12-3*01 TRAJ48*01 18.0 651.0 TGTGCCAGCAGTCCCGGGACGGCCAGCTCAGAAAACACCATATATTTT CASSPGTASSENTIYF TRBV12-3*01,TRBV12-4*01 TRBJ1-3*01 24.0 639.0 CAMSGSNFGNEKLTF_CASSPGTASSENTIYF 1 7718 PGT-178 PGT 0.56 1480 PGT-178 188 7530 3 HomoSapiens PGT LLAGIGTVPI Naive T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*02:01 B2M MHCI -6534 chip0423_441421 13.17 10.41 Chip2 T1D_5 T1D TGTGCAGCGGCGGAAACCTCCTACGACAAGGTGATATTT CAAAETSYDKVIF TRAV13-1*01 TRAJ50*01 84.0 6146.0 TGTGCCAGCCAACTAGCGGGAGGCACCGGGGAGCTGTTTTTT CASQLAGGTGELFF TRBV24-1*01 TRBJ2-2*01 11.0 936.0 CAAAETSYDKVIF_CASQLAGGTGELFF 131 4082 BZLF1-190-197 EBV 1.0 2156 NEG 218 3864 9 EBV BZLF1 RAKFKQLL effector memory T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-B*08:01 B2M MHCI -6535 chip0423_757624 -4.38 8.28 Chip2 T1D_6 T1D TGTGCCAGCAGTTTAAGCCTAGCGGGGGTTGATACGCAGTATTTT CASSLSLAGVDTQYF TRBV27*01 TRBJ2-3*01 95.0 5270.0 _CASSLSLAGVDTQYF 1 5754 PGT-178 PGT 0.67 1480 PGT-178 182 5572 2 HomoSapiens PGT LLAGIGTVPI Naive T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*02:01 B2M MHCI -6536 chip0423_647388 6.86 10.84 Chip2 healthy_3 healthy TGTGCCGCCAGTGGTGGGGGAAGCCAAGGAAATCTCATCTTT CAASGGGSQGNLIF TRAV13-1*01 TRAJ42*01 44.0 1962.0 TGTGCCAGTAGTATGAGGAGCCAAGAGACCCAGTACTTC CASSMRSQETQYF TRBV19*01 TRBJ2-5*01 62.0 2551.0 CAASGGGSQGNLIF_CASSMRSQETQYF 1 9377 M1 FLU 0.45 1250 M1 189 9188 7 InfluenzaA M1 GILGFVFTL transitional T cells between effector and memory populations PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*02:01 B2M MHCI -6537 chip0423_639017 9.52 10.31 Chip2 T1D_4 T1D TGTGCTGTGAGAGACACGACGTGGGATGACAAGATCATCTTT CAVRDTTWDDKIIF TRAV3*01 TRAJ30*01 113.0 5025.0 TGTGCCAGCAGCTTAGGAGGGGGAGAGGGGGCCAGTGAGCAGTTCTTC CASSLGGGEGASEQFF TRBV7-6*01 TRBJ2-1*01 18.0 996.0 CAVRDTTWDDKIIF_CASSLGGGEGASEQFF 12 6187 EBNA3A-193-201 EBV 0.45 1022 NEG 214 5973 9 EBV EBNA3A FLRGRAYGL effector memory T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-B*08:01 B2M MHCI -6538 chip0423_487832 14.81 8.82 Chip2 T1D_4 T1D TGTGCCAGCAGCCAAGTCAACAACCCGGGGGATGGCTACACCTTC CASSQVNNPGDGYTF TRBV14*01 TRBJ1-2*01 13.0 378.0 _CASSQVNNPGDGYTF 94 2621 EBNA3A-158-166 EBV 0.5 444 NEG 194 2427 12 EBV EBNA3A QAKWRLQTL effector T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-B*08:01 B2M MHCI -6539 chip0423_235886 5.7 8.93 Chip2 T1D_4 T1D TGTGCTGTGCTCCAGGATAGCAACTATCAGTTAATCTGG CAVLQDSNYQLIW TRAV21*01 TRAJ33*01 9.0 705.0 TGCGCCAGCAGTGATGACGGAATGAACACTGAAGCTTTCTTT CASSDDGMNTEAFF TRBV10-2*01 TRBJ1-1*01 168.0 6213.0 CAVLQDSNYQLIW_CASSDDGMNTEAFF 8 5422 EBV-LMP2A EBV 0.95 700 EBV-LMP2A 196 5226 6 EBV LMP2A CLGGLLTMV central memory T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*02:01 B2M MHCI -6540 chip0423_92088 11.73 8.21 Chip2 T1D_4 T1D TGCATCGCCAGAGAGGGAGGAGGTGCTGACGGGCTCACCTTT CIAREGGGADGLTF TRAV26-1*01 TRAJ45*01 27.0 1986.0 TGTGCCAGCAGCTTAGCGGTCGGAGAAGGGCCCCAGCATTTT CASSLAVGEGPQHF TRBV7-9*01 TRBJ1-5*01 26.0 937.0 CIAREGGGADGLTF_CASSLAVGEGPQHF 1 3418 BZLF1-190-197 EBV 0.89 2156 BZLF1-190-197 213 3205 10 EBV BZLF1 RAKFKQLL effector memory T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-B*08:01 B2M MHCI -6541 chip0423_843015 10.14 7.12 Chip2 T1D_4 T1D TGTGCTGATGGTGGTGCTACAAACAAGCTCATCTTT CADGGATNKLIF TRAV21*01 TRAJ32*01 21.0 1991.0 TGCAGTGCTAGAGACTCGACAGGGAATGGCTACACCTTC CSARDSTGNGYTF TRBV20-1*01 TRBJ1-2*01 7.0 638.0 CADGGATNKLIF_CSARDSTGNGYTF 1 6487 EBV-BLMF1 EBV 0.47 2531 NEG 231 6256 10 EBV BLMF1 GLCTLVAML effector memory T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*02:01 B2M MHCI -6542 chip0423_645091 -0.62 10.41 Chip2 T1D_5 T1D TGTGCCTGGAGTGTACACAATAACGAGCAGTACTTC CAWSVHNNEQYF TRBV30*01 TRBJ2-7*01 23.0 1118.0 _CAWSVHNNEQYF 1 6291 ZNT8-YAY-8 ZNT8 0.85 54 ZNT8-YAY-8 178 6113 3 HomoSapiens ZNT8 YAYAKWKL Naive T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-B*08:01 B2M MHCI -6543 chip0423_453244 12.45 10.43 Chip2 T1D_6 T1D TGCATCCTCCCACTTGCTGGTGGTACTAGCTATGGAAAGCTGACATTT CILPLAGGTSYGKLTF TRAV26-2*01 TRAJ52*01 38.0 1455.0 TGTGCCAGCAGCTTGGGACAGGCCTACGAGCAGTACTTC CASSLGQAYEQYF TRBV7-8*01 TRBJ2-7*01 11.0 706.0 CILPLAGGTSYGKLTF_CASSLGQAYEQYF 308 4136 EBNA3A-193-201 EBV 0.92 1022 NEG 212 3924 9 EBV EBNA3A FLRGRAYGL effector memory T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-B*08:01 B2M MHCI -6544 chip0423_823918 7.24 11.52 Chip2 T1D_6 T1D TGTGGCACAGAGATAAACTTGTAACCAGGGAGGAAAGCTTATCTTC CGTEINLta??acQGGKLIF TRAV30*01 TRAJ23*01 37.0 969.0 TGTGCCAGCAGCTTAGGAGGACAGACAGAGACCCAGTACTTC CASSLGGQTETQYF TRBV13*01 TRBJ2-5*01 7.0 328.0 CGTEINLta??acQGGKLIF_CASSLGGQTETQYF 1 5086 ROTA-VP6 ROTA 0.87 47 NEG 198 4888 7 RotavirusA VP6 TLLANVTAV transitional T cells between effector and memory populations PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*02:01 B2M MHCI -6545 chip0423_117210 9.17 8.01 Chip2 T1D_4 T1D TGCATCGTCAGCGCGGGCGGCGGTGCTGACGGGCTCCCCTTT CIVSAGGGADGLPF TRAV26-1*01 TRAJ45*01 12.0 729.0 TGTGCCAGCAGCTTAGCGGTCGGAGAAGGGCCCCAGCATTTT CASSLAVGEGPQHF TRBV7-9*01 TRBJ1-5*01 25.0 803.0 CIVSAGGGADGLPF_CASSLAVGEGPQHF 1 6020 BZLF1-190-197 EBV 0.91 2156 BZLF1-190-197 201 5819 8 EBV BZLF1 RAKFKQLL effector memory T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-B*08:01 B2M MHCI -6546 chip0423_847716 -0.38 7.8 Chip2 T1D_6 T1D TGTGCCAGCAGTTACCGCGAAGACAGTCTCGAGGATGGAAACACCATATATTTT CASSYREDSLEDGNTIYF TRBV6-2*01,TRBV6-3*01 TRBJ1-3*01 38.0 965.0 _CASSYREDSLEDGNTIYF 1 8340 PGT-178 PGT 0.46 1480 PGT-178 186 8154 4 HomoSapiens PGT LLAGIGTVPI Naive T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*02:01 B2M MHCI -6547 chip0423_552820 8.16 9.92 Chip2 T1D_6 T1D TGCGCCAGCAGTGACATTAGGGAGGGGCAGGGTGAAGCTTTCTTT CASSDIREGQGEAFF TRBV10-2*01 TRBJ1-1*01 3.0 68.0 _CASSDIREGQGEAFF 37 9293 EBNA3A-158-166 EBV 0.77 444 NEG 216 9077 8 EBV EBNA3A QAKWRLQTL effector memory T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-B*08:01 B2M MHCI -6548 chip0423_168160 5.37 8.66 Chip2 T1D_5 T1D TGTGCAATGAGAGAGGGCGAGGCTGGAGGCTTCAAAACTATCTTT CAMREGEAGGFKTIF TRAV14/DV4*01 TRAJ9*01 13.0 253.0 TGTGCCAGCAGTCATTTCTCCTACGAGCAGTACTTC CASSHFSYEQYF TRBV14*01 TRBJ2-7*01 6.0 260.0 CAMREGEAGGFKTIF_CASSHFSYEQYF 1 6542 BZLF1-190-197 EBV 0.45 2156 NEG 219 6323 6 EBV BZLF1 RAKFKQLL central memory T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-B*08:01 B2M MHCI -6549 chip0423_93041 9.38 12.17 Chip2 T1D_4 T1D TGCAGTGCCTCTCGTGACTCCTACGAGCAGTACTTC CSASRDSYEQYF TRBV20-1*01 TRBJ2-7*01 4.0 320.0 _CSASRDSYEQYF 7 4878 EBV-LMP1-1 EBV 0.92 237 NEG 245 4633 7 EBV LMP1 YLLEMLWRL transitional T cells between effector and memory populations PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*02:01 B2M MHCI -6550 chip0423_753622 9.52 9.08 Chip2 T1D_4 T1D TGTGCCAGCAGTTTAACGGGGCCCATACCCAACACAGATACGCAGTATTTT CASSLTGPIPNTDTQYF TRBV27*01 TRBJ2-3*01 40.0 1517.0 _CASSLTGPIPNTDTQYF 1 6741 EBNA3A-158-166 EBV 0.64 444 NEG 188 6553 8 EBV EBNA3A QAKWRLQTL effector memory T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-B*08:01 B2M MHCI -6551 chip0423_864203 -0.75 9.57 Chip2 T1D_4 T1D TGTGCCAGCAGCCAGACTATGTACCAAGAGACCCAGTACTTC CASSQTMYQETQYF TRBV3-1*01 TRBJ2-5*01 44.0 2143.0 _CASSQTMYQETQYF 1 8182 ZNT8-186-194 ZNT8 0.79 22 ZNT8-186-194 179 8003 3 HomoSapiens ZNT8 VAANIVLTV Naive T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*02:01 B2M MHCI -6552 chip0423_4985 13.53 9.96 Chip2 T1D_5 T1D TGCCTCGTGGAGGAACCCGGCGTCTACTTGCCCTGCTTT CLVEEPGVYLPCF TRAV4*01 TRAJ20*01 6.0 188.0 TGTGCCAGCAGCTTAGCTCGGACTGAAGCTTTCTTT CASSLARTEAFF TRBV7-2*01 TRBJ1-1*01 19.0 1161.0 CLVEEPGVYLPCF_CASSLARTEAFF 1 4057 BZLF1-190-197 EBV 0.56 2156 BZLF1-190-197 200 3857 12 EBV BZLF1 RAKFKQLL effector T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-B*08:01 B2M MHCI -6553 chip0423_431555 -3.28 10.63 Chip2 T1D_5 T1D _ 6746 4940 INS-WMR-10 INS 0.48 5 NEG 186 4754 2 HomoSapiens INS WMRLLPLLAL Naive T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-B*08:01 B2M MHCI -6554 chip0423_352508 11.43 7.21 Chip2 T1D_4 T1D TGTGCCAGCAGCTTAGGGCAAGCCTACGAGCAATACTTC CASSLGQAYEQYF TRBV7-8*01 TRBJ2-7*01 25.0 1215.0 _CASSLGQAYEQYF 175 5328 EBNA3A-193-201 EBV 0.59 1022 NEG 214 5114 10 EBV EBNA3A FLRGRAYGL effector memory T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-B*08:01 B2M MHCI -6555 chip0423_666534 13.12 10.79 Chip2 T1D_5 T1D TGTGCAGCATTGGAAACCTCCTACGACAAGGTGATATTT CAALETSYDKVIF TRAV13-1*01 TRAJ50*01 18.0 1904.0 TGTGCCAGCAGTGAACCGTTCGAGCAGTACTTC CASSEPFEQYF TRBV2*01 TRBJ2-7*01 15.0 978.0 CAALETSYDKVIF_CASSEPFEQYF 2 4296 BZLF1-190-197 EBV 0.62 2156 NEG 192 4104 9 EBV BZLF1 RAKFKQLL effector memory T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-B*08:01 B2M MHCI -6556 chip0423_421525 11.45 8.34 Chip2 T1D_4 T1D TGTGCTGTCAATTCAGGAAACACACCTCTTGTCCTT CAVNSGNTPLVL TRAV1-2*01 TRAJ29*01 4.0 372.0 TGTGCCAGCAGCCAAGTCAACAACCCGGGGGATGGCTACACCTTC CASSQVNNPGDGYTF TRBV14*01 TRBJ1-2*01 15.0 356.0 CAVNSGNTPLVL_CASSQVNNPGDGYTF 1 4911 EBNA3A-158-166 EBV 0.58 444 NEG 215 4696 10 EBV EBNA3A QAKWRLQTL effector memory T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-B*08:01 B2M MHCI -6557 chip0423_413376 9.58 9.82 Chip2 healthy_3 healthy TGTGCCGTGAAGGACACCGACAAGCTCATCTTT CAVKDTDKLIF TRAV8-1*01 TRAJ34*01 17.0 1112.0 CAVKDTDKLIF_ 56 5004 EBV-BRLF1 EBV 0.79 1264 EBV-BRLF1 193 4811 8 EBV BRLF1 YVLDHLIVV effector memory T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*02:01 B2M MHCI -6558 chip0423_303707 9.32 9.64 Chip2 T1D_5 T1D TGTGCCAGCAGCCCTCTTGGGAGCAATGAAAAACTGTTTTTT CASSPLGSNEKLFF TRBV7-9*01 TRBJ1-4*01 39.0 1557.0 _CASSPLGSNEKLFF 20 5279 BZLF1-190-197 EBV 0.56 2156 NEG 208 5071 8 EBV BZLF1 RAKFKQLL effector memory T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-B*08:01 B2M MHCI -6559 chip0423_102649 5.62 13.34 Chip2 T1D_6 T1D TGTGCTGTGAGAGAATATGGAAACAAACTGGTCTTT CAVREYGNKLVF TRAV1-2*01 TRAJ47*01 25.0 1899.0 TGTGCCAGCAGCTTAGCGGGTCGTGAGGGTACGCAGTATTTT CASSLAGREGTQYF TRBV11-3*01,TRBV11-2*01 TRBJ2-3*01 2.0 69.0 CAVREYGNKLVF_CASSLAGREGTQYF 7 7653 NP380-388 FLU 0.58 60 NEG 190 7463 7 InfluenzaA NP ELRSRYWAI transitional T cells between effector and memory populations PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-B*08:01 B2M MHCI -6560 chip0423_46270 -1.76 7.1 Chip2 healthy_4 healthy TGTGCTTTCGTAGAATAATAATGCAGGCAACATGCTCACCTTT CAFVE**??tAGNMLTF TRAV38-1*01 TRAJ39*01 3.0 21.0 TGTGCCAGCAGCATGAGTCCCGGGCGCTCCTACGAGCAGTACTTC CASSMSPGRSYEQYF TRBV6-1*01 TRBJ2-7*01 53.0 1856.0 CAFVE**??tAGNMLTF_CASSMSPGRSYEQYF 1 6162 EBNA3A-158-166 EBV 1.0 444 NEG 212 5950 3 EBV EBNA3A QAKWRLQTL Naive T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-B*08:01 B2M MHCI -6561 chip0423_781520 9.33 8.52 Chip2 T1D_4 T1D TGTGGAGCAGACATGGGTCGAGGAACCTACAAATACATCTTT CGADMGRGTYKYIF TRAV34*01 TRAJ40*01 34.0 1938.0 TGTGCCAGCAGCTCAGGGACAGGCGAGGGGTATGAGCAGTTCTTC CASSSGTGEGYEQFF TRBV7-3*01 TRBJ2-1*01 3.0 85.0 CGADMGRGTYKYIF_CASSSGTGEGYEQFF 1 4881 BZLF1-190-197 EBV 0.65 2156 BZLF1-190-197 219 4662 8 EBV BZLF1 RAKFKQLL effector memory T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-B*08:01 B2M MHCI -6562 chip0423_594626 -1.09 9.27 Chip2 T1D_5 T1D TGTGCAGAGATACTCTATAACACCGACAAGCTCATCTTT CAEILYNTDKLIF TRAV5*01 TRAJ34*01 16.0 798.0 TGTGCCAGCAGTTTAGCCGGCGAGCAGTACTTC CASSLAGEQYF TRBV28*01 TRBJ2-7*01 18.0 1437.0 CAEILYNTDKLIF_CASSLAGEQYF 1 7546 G6PC2-LTS-10 IGRP 0.91 59 G6PC2-LTS-10 179 7367 3 HomoSapiens G6PC2 LTSLTILQLY Naive T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*01:01 B2M MHCI -6563 chip0423_816773 12.33 10.62 Chip2 T1D_5 T1D TGTGCAGCAGCGGAAACCTCCTACGACAAGGTGATATTT CAAAETSYDKVIF TRAV13-1*01 TRAJ50*01 12.0 984.0 TGTGCCAGCAGCCAATTGGGGGAGGCGAAGGAAGGCACTGAAGCTTTCTTT CASSQLGEAKEGTEAFF TRBV11-1*01 TRBJ1-1*01 58.0 1667.0 CAAAETSYDKVIF_CASSQLGEAKEGTEAFF 29 3038 BZLF1-190-197 EBV 0.5 2156 NEG 238 2800 9 EBV BZLF1 RAKFKQLL effector memory T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-B*08:01 B2M MHCI -6564 chip0423_644684 5.91 9.66 Chip2 healthy_3 healthy TGCGCCAGCAGTGATGACGGCATGAACACTGAAGCTTTCTTT CASSDDGMNTEAFF TRBV10-2*01 TRBJ1-1*01 26.0 1081.0 _CASSDDGMNTEAFF 8 6338 EBV-LMP2A EBV 1.0 700 NEG 182 6156 6 EBV LMP2A CLGGLLTMV central memory T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*02:01 B2M MHCI -6565 chip0423_74841 6.32 12.34 Chip2 T1D_4 T1D TGTGCCAGCAGCGAGGGTATCGGCAATGAGCAGTTCTTC CASSEGIGNEQFF TRBV28*01 TRBJ2-1*01 71.0 5704.0 _CASSEGIGNEQFF 1 7203 MART1-ALA MART1 0.54 269 NEG 151 7052 7 HomoSapiens MART1 ALAGIGILTV transitional T cells between effector and memory populations PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*02:01 B2M MHCI -6566 chip0423_327528 0.3 8.39 Chip2 healthy_3 healthy TGTGCTGTCAATTCAGGAAACACACCTCTTGTCTTT CAVNSGNTPLVF TRAV1-2*01 TRAJ29*01 1.0 234.0 TGTGCCAGCAGCTCCGGGACAGGACATGAGTACGAGCAGTACTTC CASSSGTGHEYEQYF TRBV5-6*01 TRBJ2-7*01 43.0 2032.0 CAVNSGNTPLVF_CASSSGTGHEYEQYF 1 6377 PGT-178 PGT 0.86 1480 PGT-178 194 6183 4 HomoSapiens PGT LLAGIGTVPI Naive T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*02:01 B2M MHCI -6567 chip0423_248101 10.09 7.34 Chip2 T1D_5 T1D TGTGCAGCGGCGGAAACCTCCTACGACAAGGTGATATTT CAAAETSYDKVIF TRAV13-1*01 TRAJ50*01 8.0 965.0 TGTGCCAGCCAACTAGCGGGAGGCACCGGGGAGCTGTTTTTT CASQLAGGTGELFF TRBV24-1*01 TRBJ2-2*01 53.0 2987.0 CAAAETSYDKVIF_CASQLAGGTGELFF 131 4043 BZLF1-190-197 EBV 0.54 2156 NEG 229 3814 10 EBV BZLF1 RAKFKQLL effector memory T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-B*08:01 B2M MHCI -6568 chip0423_649214 13.19 7.38 Chip2 T1D_5 T1D _ 6746 3564 BZLF1-190-197 EBV 0.53 2156 NEG 245 3319 10 EBV BZLF1 RAKFKQLL effector memory T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-B*08:01 B2M MHCI -6569 chip0423_453487 10.93 10.93 Chip2 T1D_4 T1D TGCACCGTCAGAGAGGGCGGCGGTGCTGGCGGCCTCCCCTTT CTVREGGGAGGLPF TRAV26-1*01 TRAJ45*01 27.0 2004.0 TGTGCCAGCAGCTTAGCGGTCGGAGAAGGGCCCCAGCATTTT CASSLAVGEGPQHF TRBV7-9*01 TRBJ1-5*01 55.0 2355.0 CTVREGGGAGGLPF_CASSLAVGEGPQHF 1 3781 BZLF1-190-197 EBV 0.89 2156 BZLF1-190-197 238 3543 9 EBV BZLF1 RAKFKQLL effector memory T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-B*08:01 B2M MHCI -6570 chip0423_256062 14.3 8.95 Chip2 T1D_4 T1D TGCATCGTCAGAGAGGGGGGGGGTGCTGACGGGCTCACCTTT CIVREGGGADGLTF TRAV26-1*01 TRAJ45*01 24.0 860.0 TGTGCCAGCAGCTTAGCGGTCGGAGAAGGGCCCCAGCATTTT CASSLAVGEGPQHF TRBV7-9*01 TRBJ1-5*01 49.0 858.0 CIVREGGGADGLTF_CASSLAVGEGPQHF 68 4042 BZLF1-190-197 EBV 0.84 2156 BZLF1-190-197 219 3823 12 EBV BZLF1 RAKFKQLL effector T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-B*08:01 B2M MHCI -6571 chip0423_505 6.61 11.54 Chip2 T1D_6 T1D TGTGCCGTGCACCCATTCTATTCGGGTGGCGGTGCTGTCGGTCTCCCCTTT CAVHPFYSGGGAVGLPF TRAV12-2*01 TRAJ45*01 36.0 1539.0 TGTGCCAGCACTCAAACAGGGGCTGGATCACCCCTCCACTTT CASTQTGAGSPLHF TRBV28*01 TRBJ1-6*01 1.0 29.0 CAVHPFYSGGGAVGLPF_CASTQTGAGSPLHF 1 5400 MART1-ALA MART1 0.79 269 MART1-ALA 210 5190 7 HomoSapiens MART1 ALAGIGILTV transitional T cells between effector and memory populations PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*02:01 B2M MHCI -6572 chip0423_66722 8.78 8.64 Chip2 T1D_4 T1D TGTGCTGTGACGTCCCTTTACTCTGGGGCTGGGAGTTACCAACTCACTTTC CAVTSLYSGAGSYQLTF TRAV3*01 TRAJ28*01 106.0 3991.0 CAVTSLYSGAGSYQLTF_ 1 6312 EBNA3A-158-166 EBV 0.92 444 EBNA3A-158-166 189 6123 8 EBV EBNA3A QAKWRLQTL effector memory T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-B*08:01 B2M MHCI -6573 chip0423_151095 9.85 7.15 Chip2 T1D_6 T1D TGCAGCGCCGGCAGGGACGGGACTAATGAAAAACTGTTTTTT CSAGRDGTNEKLFF TRBV29-1*01 TRBJ1-4*01 43.0 1839.0 _CSAGRDGTNEKLFF 159 5766 EBV-BLMF1 EBV 0.57 2531 NEG 248 5518 10 EBV BLMF1 GLCTLVAML effector memory T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*02:01 B2M MHCI -6574 chip0423_774955 7.29 12.02 Chip2 T1D_6 T1D TGTGCTGTCTCTGGCAACACAGGCAAACTAATCTTT CAVSGNTGKLIF TRAV20*01 TRAJ37*01 25.0 2400.0 TGCGCCAGCAGCCAATGGGACAATCAGCCCCAGCATTTT CASSQWDNQPQHF TRBV4-1*01 TRBJ1-5*01 64.0 2775.0 CAVSGNTGKLIF_CASSQWDNQPQHF 4 5716 INS-WMR-8 INS 0.59 17 INS-WMR-8 236 5480 7 HomoSapiens INS WMRLLPLL transitional T cells between effector and memory populations PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-B*08:01 B2M MHCI -6575 chip0423_295058 -2.07 9.71 Chip2 healthy_3 healthy TGTGCCGTCCAAACTGGAGCCAATAGTAAGCTGACATTT CAVQTGANSKLTF TRAV12-2*01 TRAJ56*01 30.0 2022.0 TGTGCCAGCAGTTTAATGGGGCCAGGGGCGCTGTTTTTT CASSLMGPGALFF TRBV27*01 TRBJ2-2*01 11.0 852.0 CAVQTGANSKLTF_CASSLMGPGALFF 1 7177 NP140-148 FLU 0.77 102 NP140-148 178 6999 3 InfluenzaA NP HSNLNDATY Naive T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*01:01 B2M MHCI -6576 chip0423_165427 7.75 11.41 Chip2 T1D_4 T1D TGTGCCAGCAGCTTACAGGGGAGCAACGAGCAGTACTTC CASSLQGSNEQYF TRBV6-2*01,TRBV6-3*01 TRBJ2-7*01 43.0 1606.0 _CASSLQGSNEQYF 1 4996 EBV-BRLF1 EBV 0.81 1264 NEG 214 4782 7 EBV BRLF1 YVLDHLIVV transitional T cells between effector and memory populations PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*02:01 B2M MHCI -6577 chip0423_474972 14.16 7.69 Chip2 T1D_4 T1D TGTGCTGTCAATTCAGGAAACACACCTCTTGTCTTT CAVNSGNTPLVF TRAV1-2*01 TRAJ29*01 1.0 20.0 TGTGCCAGCAGCCAAGTCAACAACCCGGGGGATGGCTACACCTTC CASSQVNNPGDGYTF TRBV14*01 TRBJ1-2*01 23.0 676.0 CAVNSGNTPLVF_CASSQVNNPGDGYTF 31 4680 EBNA3A-158-166 EBV 0.5 444 EBNA3A-158-166 220 4460 10 EBV EBNA3A QAKWRLQTL effector memory T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-B*08:01 B2M MHCI -6578 chip0423_17962 5.94 13.24 Chip2 T1D_6 T1D TGTGCAGGGCACAGAGCATCGATGTGCCGGGTTGGCACGTTCATCTTT CAGHRASMCRVGTFIF TRAV35*01 TRAJ30*01 7.0 49.0 TGTGCCAGTAGTATCTTTCAAGCCGGGGAGCTGTTTTTT CASSIFQAGELFF TRBV19*01 TRBJ2-2*01 23.0 1088.0 CAGHRASMCRVGTFIF_CASSIFQAGELFF 1 4984 M1 FLU 0.96 1250 M1 221 4763 7 InfluenzaA M1 GILGFVFTL transitional T cells between effector and memory populations PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*02:01 B2M MHCI -6579 chip0423_89433 -2.77 8.46 Chip2 T1D_5 T1D TGTGCTGTGCCCCTATATAACACCGACAAGCTCATCTTT CAVPLYNTDKLIF TRAV21*01 TRAJ34*01 57.0 4188.0 TGTGCCAGCAGCGTAGATCTGGGGACTAGCGGGGGATCAGATACGCAGTATTTT CASSVDLGTSGGSDTQYF TRBV9*01 TRBJ2-3*01 25.0 1108.0 CAVPLYNTDKLIF_CASSVDLGTSGGSDTQYF 1 8758 G6PC2-NLI-8 IGRP 0.65 32 G6PC2-NLI-8 182 8576 2 HomoSapiens G6PC2 NLIFKWIL Naive T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-B*08:01 B2M MHCI -6580 chip0423_7134 15.74 12.05 Chip2 T1D_4 T1D TGCATCGTCAGAGAGGGAGGAGGTGCTGACGGACTCACCTTT CIVREGGGADGLTF TRAV26-1*01 TRAJ45*01 41.0 2554.0 TGTGCCAGCAGCTTAGCGGTCGGAGAAGGGCCCCAGCATTTT CASSLAVGEGPQHF TRBV7-9*01 TRBJ1-5*01 16.0 599.0 CIVREGGGADGLTF_CASSLAVGEGPQHF 68 2605 BZLF1-190-197 EBV 0.87 2156 BZLF1-190-197 204 2401 12 EBV BZLF1 RAKFKQLL effector T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-B*08:01 B2M MHCI -6581 chip0423_493361 16.02 10.93 Chip2 T1D_6 T1D TGTGCAGCAAGCAAGATAGAGGAGGAGGTGCTGACGGACTCACCTTT CAASKIEga?GGADGLTF TRAV23/DV6*01 TRAJ45*01 137.0 4512.0 TGTGCCAGCAGCTTGGGACAGGCCTACGAGCAGTACTTC CASSLGQAYEQYF TRBV7-8*01 TRBJ2-7*01 15.0 915.0 CAASKIEga?GGADGLTF_CASSLGQAYEQYF 8 2968 EBNA3A-193-201 EBV 1.0 1022 NEG 261 2707 12 EBV EBNA3A FLRGRAYGL effector T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-B*08:01 B2M MHCI -6582 chip0423_437636 10.24 9.84 Chip2 T1D_6 T1D TGCAGCGCCGGCAGGGACGGGACTAATGAAAAACTGTTTTTT CSAGRDGTNEKLFF TRBV29-1*01 TRBJ1-4*01 77.0 3659.0 _CSAGRDGTNEKLFF 159 4252 EBV-BLMF1 EBV 0.43 2531 NEG 225 4027 9 EBV BLMF1 GLCTLVAML effector memory T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*02:01 B2M MHCI -6583 chip0423_153931 13.26 10.27 Chip2 T1D_5 T1D TGTGCCAGCCAACTAGCGGGAGGCACCGGGGAGCTGTTTTTT CASQLAGGTGELFF TRBV24-1*01 TRBJ2-2*01 19.0 1109.0 _CASQLAGGTGELFF 69 3390 BZLF1-190-197 EBV 0.57 2156 NEG 193 3197 9 EBV BZLF1 RAKFKQLL effector memory T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-B*08:01 B2M MHCI -6584 chip0423_38585 -2.35 8.68 Chip2 T1D_6 T1D TGTGCAATGACCCTATCTAACTTTGGAAATGAGAAATTAACCTTT CAMTLSNFGNEKLTF TRAV12-3*01 TRAJ48*01 66.0 2234.0 TGCGCCAGCAGCCTAGCGGGGGAGGCGTTCGTTACGCAGTATTTT CASSLAGEAFVTQYF TRBV5-1*01 TRBJ2-3*01 47.0 3129.0 CAMTLSNFGNEKLTF_CASSLAGEAFVTQYF 1 8286 PGT-178 PGT 0.46 1480 PGT-178 197 8089 3 HomoSapiens PGT LLAGIGTVPI Naive T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*02:01 B2M MHCI -6585 chip0423_645678 9.13 7.88 Chip2 T1D_4 T1D TGTGCCAGCAGCTTAACGGTTCTGGCAGGTCCAAACACTGAAGCTTTCTTT CASSLTVLAGPNTEAFF TRBV7-3*01 TRBJ1-1*01 20.0 467.0 _CASSLTVLAGPNTEAFF 32 5163 BZLF1-190-197 EBV 0.97 2156 BZLF1-190-197 213 4950 8 EBV BZLF1 RAKFKQLL effector memory T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-B*08:01 B2M MHCI -6586 chip0423_80599 -4.09 8.79 Chip2 T1D_4 T1D TGTGCAGAGAGAACCAGTGGCTCTAGGTTGACCTTT CAERTSGSRLTF TRAV5*01 TRAJ10*01,TRAJ27*01 14.0 1984.0 CAERTSGSRLTF_ 1 5385 PB1-591-599 FLU 0.48 2 NEG 177 5208 2 InfluenzaA PB1 VSDGGPNLY Naive T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*01:01 B2M MHCI -6587 chip0423_861337 12.81 6.65 Chip2 T1D_6 T1D TGCATCCTCCCACTTGCTGGTGGTACTAGCTATGGAAAGCTGACATTT CILPLAGGTSYGKLTF TRAV26-2*01 TRAJ52*01 52.0 2747.0 TGTGCCAGCAGCTTGGGACAAGCCTACGAGCAGTACTTC CASSLGQAYEQYF TRBV7-8*01 TRBJ2-7*01 12.0 684.0 CILPLAGGTSYGKLTF_CASSLGQAYEQYF 308 4463 EBNA3A-193-201 EBV 0.86 1022 NEG 234 4229 10 EBV EBNA3A FLRGRAYGL effector memory T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-B*08:01 B2M MHCI -6588 chip0423_348604 -2.39 10.34 Chip2 T1D_4 T1D TGTGTGGTTGACTCAGGAACCTACAAATACATCTTT CVVDSGTYKYIF TRAV12-1*01 TRAJ40*01 68.0 5495.0 CVVDSGTYKYIF_ 1 4574 MART1-ALA MART1 0.42 269 NEG 185 4389 3 HomoSapiens MART1 ALAGIGILTV Naive T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*02:01 B2M MHCI -6589 chip0423_653331 16.61 11.2 Chip2 T1D_6 T1D TGCGGCCCCGCGACGGATAATATTGCACGCAGCATGCGCACCTGT CGPATDNIARSMRTC TRAV30*01 TRAJ39*01 5.0 188.0 TGTGCCAGCGGGTTCGGGGACAGGGGCTACAATGAGCAGTTCTTC CASGFGDRGYNEQFF TRBV14*01 TRBJ2-1*01 4.0 119.0 CGPATDNIARSMRTC_CASGFGDRGYNEQFF 1 2422 M1 FLU 0.5 1250 NEG 225 2197 12 InfluenzaA M1 GILGFVFTL effector T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*02:01 B2M MHCI -6590 chip0423_781329 12.94 11.52 Chip2 T1D_5 T1D TGCATCGTCAGAGAGACTAACAATGACATGCGCTTT CIVRETNNDMRF TRAV26-1*01 TRAJ43*01 2.0 78.0 TGTGCCAGCAGCTCCTTAAGCGGGGGGGCAGGAAATGAGCAGTTCTTC CASSSLSGGAGNEQFF TRBV7-9*01 TRBJ2-1*01 35.0 1793.0 CIVRETNNDMRF_CASSSLSGGAGNEQFF 1 2889 BZLF1-190-197 EBV 0.6 2156 NEG 199 2690 9 EBV BZLF1 RAKFKQLL effector memory T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-B*08:01 B2M MHCI -6591 chip0423_636941 8.88 9.17 Chip2 T1D_4 T1D TGCATCGTCAGAGAGGGCGGGGGTGCTGACGGCCTCCCCTTT CIVREGGGADGLPF TRAV26-1*01 TRAJ45*01 33.0 1964.0 TGTGCCAGCAGCTTAGCGGTCGGAGAAGGGCCCCAGCATTTT CASSLAVGEGPQHF TRBV7-9*01 TRBJ1-5*01 43.0 1684.0 CIVREGGGADGLPF_CASSLAVGEGPQHF 21 5207 BZLF1-190-197 EBV 0.8 2156 BZLF1-190-197 175 5032 8 EBV BZLF1 RAKFKQLL effector memory T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-B*08:01 B2M MHCI -6592 chip0423_608767 13.15 7.03 Chip2 T1D_5 T1D TGTGCCAGCAGCCCTCTGGGGAGTAAGGCCGGGGAGCTGTTTTTT CASSPLGSKAGELFF TRBV7-9*01 TRBJ2-2*01 46.0 2841.0 _CASSPLGSKAGELFF 2 4883 BZLF1-190-197 EBV 0.65 2156 BZLF1-190-197 182 4701 10 EBV BZLF1 RAKFKQLL effector memory T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-B*08:01 B2M MHCI -6593 chip0423_219421 9.52 10.76 Chip2 T1D_6 T1D TGCAGCGCCGGCAGGGACGGGACTAATGAAAAACTGTTTTTT CSAGRDGTNEKLFF TRBV29-1*01 TRBJ1-4*01 164.0 7461.0 _CSAGRDGTNEKLFF 159 5295 EBV-BLMF1 EBV 0.69 2531 NEG 206 5089 9 EBV BLMF1 GLCTLVAML effector memory T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*02:01 B2M MHCI -6594 chip0423_156665 16.33 11.07 Chip2 T1D_5 T1D TGTGCCAGCAGTTATAGCGGGGCCCACTCCTACGAGCAGTACTTC CASSYSGAHSYEQYF TRBV12-3*01,TRBV12-4*01 TRBJ2-7*01 16.0 787.0 _CASSYSGAHSYEQYF 2 3448 BZLF1-190-197 EBV 0.47 2156 NEG 197 3251 12 EBV BZLF1 RAKFKQLL effector T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-B*08:01 B2M MHCI -6595 chip0423_813036 12.44 8.25 Chip2 T1D_4 T1D TGCATCCTGGGTATGCCAGGGGGTGGTGCTGACGGACTCACCTTT CILGMPGGGADGLTF TRAV26-2*01 TRAJ45*01 16.0 770.0 TGTGCCAGCAGTATGGGAAACGCGTTTGGAAAACTGTTTTTT CASSMGNAFGKLFF TRBV6-1*01 TRBJ1-4*01 37.0 1080.0 CILGMPGGGADGLTF_CASSMGNAFGKLFF 2 4149 EBNA3A-193-201 EBV 0.48 1022 NEG 239 3910 10 EBV EBNA3A FLRGRAYGL effector memory T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-B*08:01 B2M MHCI -6596 chip0423_605136 8.12 11.6 Chip2 T1D_4 T1D TGTGCAGCAAGCGACCGCCTTCCAGGAGGAAGCTACATACCTACATTT CAASDRLPGGSYIPTF TRAV13-1*01 TRAJ6*01 8.0 201.0 TGCAGTGCTACTAACCAGTACGACGGACCCGACACTGAAGCTTTCTTT CSATNQYDGPDTEAFF TRBV20-1*01 TRBJ1-1*01 56.0 2674.0 CAASDRLPGGSYIPTF_CSATNQYDGPDTEAFF 21 5235 BZLF1-190-197 EBV 0.56 2156 NEG 185 5050 7 EBV BZLF1 RAKFKQLL transitional T cells between effector and memory populations PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-B*08:01 B2M MHCI -6597 chip0423_451304 15.44 9.27 Chip2 T1D_5 T1D TGTGCAATGAGAGAGGGCGAGAGCAGTGCTTCCAAGATAATCTTT CAMREGESSASKIIF TRAV14/DV4*01 TRAJ3*01 65.0 2821.0 TGCAGCGTTGGCACAGCACATGGCTACACCTTC CSVGTAHGYTF TRBV29-1*01 TRBJ1-2*01 33.0 2317.0 CAMREGESSASKIIF_CSVGTAHGYTF 1 5057 BZLF1-190-197 EBV 0.69 2156 NEG 212 4845 12 EBV BZLF1 RAKFKQLL effector T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-B*08:01 B2M MHCI -6598 chip0423_416625 16.6 10.78 Chip2 T1D_6 T1D TGTGCAGCTAATTATGGAGGAAGCCAAGGAAATCCCATCTTT CAANYGGSQGNPIF TRAV25*01 TRAJ42*01 15.0 1145.0 TGTGCCAGTAGTATTAGAAGCACAGATACGCAGTATTTT CASSIRSTDTQYF TRBV19*01 TRBJ2-3*01 1.0 30.0 CAANYGGSQGNPIF_CASSIRSTDTQYF 1 3754 M1 FLU 0.47 1250 NEG 217 3537 12 InfluenzaA M1 GILGFVFTL effector T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*02:01 B2M MHCI -6599 chip0423_18614 10.64 7.25 Chip2 T1D_4 T1D TGTGCATCTAATACCGGCACTGCCAGTAAACTCACCTTT CASNTGTASKLTF TRAV29/DV5*01 TRAJ44*01 4.0 296.0 CASNTGTASKLTF_ 2 4961 EBV-BRLF1 EBV 0.54 1264 NEG 219 4742 10 EBV BRLF1 YVLDHLIVV effector memory T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*02:01 B2M MHCI -6600 chip0423_344411 16.27 10.76 Chip2 T1D_5 T1D TGTGCAGCAACGGAAACCTCCTACGACAAAGTGATATTT CAATETSYDKVIF TRAV13-1*01 TRAJ50*01 30.0 2159.0 TGTGCCAGCAGTCCCCCGGGGAGAAATGAAAAACTGTTTTTT CASSPPGRNEKLFF TRBV12-3*01,TRBV12-4*01 TRBJ1-4*01 72.0 2776.0 CAATETSYDKVIF_CASSPPGRNEKLFF 34 2806 BZLF1-190-197 EBV 0.45 2156 NEG 218 2588 12 EBV BZLF1 RAKFKQLL effector T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-B*08:01 B2M MHCI -6601 chip0423_317383 13.72 7.47 Chip2 T1D_6 T1D TGCATCCTCCCACTTGCTGGTGGTACTAGCTATGGAAAGCTGACATTT CILPLAGGTSYGKLTF TRAV26-2*01 TRAJ52*01 96.0 4368.0 TGTGCCAGCAGCTTGGGACAGGCCTACGAGCAGTACTTC CASSLGQAYEQYF TRBV7-8*01 TRBJ2-7*01 3.0 150.0 CILPLAGGTSYGKLTF_CASSLGQAYEQYF 308 5214 EBNA3A-193-201 EBV 0.8 1022 EBNA3A-193-201 226 4988 10 EBV EBNA3A FLRGRAYGL effector memory T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-B*08:01 B2M MHCI -6602 chip0423_676436 9.27 9.3 Chip2 T1D_4 T1D TGTGCCAGCAGCTTAGCGGTCGGAGAAGGGCCCCAGCATTTT CASSLAVGEGPQHF TRBV7-9*01 TRBJ1-5*01 26.0 1101.0 _CASSLAVGEGPQHF 113 5173 BZLF1-190-197 EBV 0.93 2156 BZLF1-190-197 177 4996 8 EBV BZLF1 RAKFKQLL effector memory T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-B*08:01 B2M MHCI -6603 chip0423_442808 10.94 7.68 Chip2 T1D_5 T1D TGTGCAGCAAGGGAAACCTCCTACGACAAGGTGATATTT CAARETSYDKVIF TRAV13-1*01 TRAJ50*01 46.0 2846.0 TGTGCCAGCAGCGCTCTCGGGCAGATCCAAGAGACCCAGTACTTC CASSALGQIQETQYF TRBV7-9*01 TRBJ2-5*01 112.0 5241.0 CAARETSYDKVIF_CASSALGQIQETQYF 2 6752 BZLF1-190-197 EBV 0.46 2156 NEG 205 6547 10 EBV BZLF1 RAKFKQLL effector memory T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-B*08:01 B2M MHCI -6604 chip0423_651531 16.04 10.26 Chip2 T1D_4 T1D TGCATCGTCAGAGCCGGTGGTGCCCGCTGGGGGCCCTTGCAGTTT CIVRAGGARWGPLQF TRAV26-1*01 TRAJ24*01 15.0 773.0 TGTGCCAGCAGTCCCCTCACAGATACGCAGTATTTT CASSPLTDTQYF TRBV27*01 TRBJ2-3*01 14.0 710.0 CIVRAGGARWGPLQF_CASSPLTDTQYF 1 3671 BZLF1-190-197 EBV 0.43 2156 NEG 176 3495 12 EBV BZLF1 RAKFKQLL effector T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-B*08:01 B2M MHCI -6605 chip0423_736334 -0.79 6.65 Chip2 T1D_5 T1D TGTGCCGTGAGAGATGGCCAGAAGCTGCTCTTT CAVRDGQKLLF TRAV12-2*01 TRAJ16*01 16.0 2012.0 TGTGCCAGCAGCGACGGGTATGAGCAGTTCTTC CASSDGYEQFF TRBV4-2*01 TRBJ2-1*01 54.0 3999.0 CAVRDGQKLLF_CASSDGYEQFF 1 10122 GAD2-EAK-10 GAD65 0.53 14 NEG 184 9938 3 HomoSapiens GAD2 EAKQKGFVPF Naive T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-B*08:01 B2M MHCI -6606 chip0423_540633 11.92 9.91 Chip2 T1D_5 T1D TGTGCCAGCAGCTCCTTAAGCGGGGGGGCAGGAAATGAGCAGTTCTTC CASSSLSGGAGNEQFF TRBV7-9*01 TRBJ2-1*01 14.0 974.0 _CASSSLSGGAGNEQFF 33 3944 BZLF1-190-197 EBV 0.55 2156 NEG 194 3750 9 EBV BZLF1 RAKFKQLL effector memory T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-B*08:01 B2M MHCI -6607 chip0423_700662 9.7 10.52 Chip2 T1D_6 T1D TGCATCCTCCCACTTGCTGGTGGTACTAGCTATGGAAAGCTGACATTT CILPLAGGTSYGKLTF TRAV26-2*01 TRAJ52*01 49.0 1985.0 CILPLAGGTSYGKLTF_ 55 5190 EBNA3A-193-201 EBV 1.0 1022 EBNA3A-193-201 182 5008 9 EBV EBNA3A FLRGRAYGL effector memory T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-B*08:01 B2M MHCI -6608 chip0423_648484 -0.8 10.28 Chip2 T1D_6 T1D TGTGCCAGCAGCGTTTACGGGGCCACAGATACGCAGTATTTT CASSVYGATDTQYF TRBV9*01 TRBJ2-3*01 29.0 1812.0 _CASSVYGATDTQYF 1 6673 NP413-421 FLU 0.41 16 NEG 175 6498 3 InfluenzaA NP ALKCKGFHV Naive T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-B*08:01 B2M MHCI -6609 chip0423_342705 12.81 7.18 Chip2 T1D_5 T1D TGTGCAGCAAGTGAAACCTCCTACGACAAGGTGATATTT CAASETSYDKVIF TRAV13-1*01 TRAJ50*01 1.0 60.0 TGTGCCAGCAGCGCTCACAGGGACGGCTACACCTTC CASSAHRDGYTF TRBV7-8*01 TRBJ1-2*01 15.0 729.0 CAASETSYDKVIF_CASSAHRDGYTF 1 3247 BZLF1-190-197 EBV 0.43 2156 NEG 205 3042 10 EBV BZLF1 RAKFKQLL effector memory T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-B*08:01 B2M MHCI -6610 chip0423_106369 5.49 11.65 Chip2 healthy_3 healthy TGTGCCAGCTGCCGGGACGGGACCTACGAGCAGTACTTC CASCRDGTYEQYF TRBV10-3*01 TRBJ2-7*01 9.0 457.0 _CASCRDGTYEQYF 5 6250 NP44-52 FLU 0.87 474 NP44-52 172 6078 7 InfluenzaA NP CTELKLSDY transitional T cells between effector and memory populations PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*01:01 B2M MHCI -6611 chip0423_816519 14.34 10.19 Chip2 T1D_5 T1D TGTGCAGCAAGTGAAACCTCCTACGACAAGGCGATATTT CAASETSYDKAIF TRAV13-1*01 TRAJ50*01 31.0 3157.0 GGGGCTCTCCTGCAGGGGGCTCTAACAACACAGGCAAACTCATCTTT GALLQGAct?NNTGKLIF TRAV36/DV7*01 TRAJ37*01 17.0 738.0 0.21 TGTGCCAGCAGCTACCCGGACTATGGCGCCGGGGAGCTGTTTTTT CASSYPDYGAGELFF TRBV7-3*01 TRBJ2-2*01 22.0 993.0 CAASETSYDKAIF_CASSYPDYGAGELFF 1 4927 BZLF1-190-197 EBV 0.59 2156 BZLF1-190-197 220 4707 12 EBV BZLF1 RAKFKQLL effector T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-B*08:01 B2M MHCI -6612 chip0423_831426 -1.66 7.97 Chip2 T1D_6 T1D TGTGCCAGCAGCCAAGTGGGAGTGAATGAGCAGTTCTTC CASSQVGVNEQFF TRBV14*01 TRBJ2-1*01 8.0 287.0 _CASSQVGVNEQFF 1 8337 PGT-178 PGT 0.73 1480 PGT-178 190 8147 3 HomoSapiens PGT LLAGIGTVPI Naive T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*02:01 B2M MHCI -6613 chip0423_709814 8.11 11.2 Chip2 T1D_4 T1D TGTGCAGAGAACGCCAGATACTCTGGGGCTGGGAGTTACCAACTCACTTTC CAENARYSGAGSYQLTF TRAV13-2*01 TRAJ28*01 48.0 1503.0 TGCGCCAGCAGCTTGGCGCTGGGGCTTCCCTACGAGCAGTACTTC CASSLALGLPYEQYF TRBV5-1*01 TRBJ2-7*01 111.0 4325.0 CAENARYSGAGSYQLTF_CASSLALGLPYEQYF 1 7123 EBNA3A-158-166 EBV 0.91 444 NEG 178 6945 7 EBV EBNA3A QAKWRLQTL transitional T cells between effector and memory populations PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-B*08:01 B2M MHCI -6614 chip0423_497829 -1.64 9.4 Chip2 T1D_5 T1D TGTGCTCTGAGTCACCTCACGGGAGGGGGAAACAAACTCACCTTT CALSHLTGGGNKLTF TRAV19*01 TRAJ10*01 2.0 33.0 CALSHLTGGGNKLTF_ 1 7170 IAPP-STN-9 IAPP 0.62 48 IAPP-STN-9 172 6998 3 HomoSapiens IAPP STNVGSNTY Naive T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*01:01 B2M MHCI -6615 chip0423_627183 13.8 8.91 Chip2 T1D_4 T1D TGCATCGTCAGAGAGGGAGGAGGTGCTGACGGACTCACCTTT CIVREGGGADGLTF TRAV26-1*01 TRAJ45*01 25.0 1093.0 TGTGCCAGCAGCTTAGCGGTCGGAGAAGGGCCCCAGCATTTT CASSLAVGEGPQHF TRBV7-9*01 TRBJ1-5*01 28.0 837.0 CIVREGGGADGLTF_CASSLAVGEGPQHF 68 2883 BZLF1-190-197 EBV 0.83 2156 BZLF1-190-197 188 2695 12 EBV BZLF1 RAKFKQLL effector T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-B*08:01 B2M MHCI -6616 chip0423_48354 13.07 7.35 Chip2 T1D_4 T1D TGCATCCTGCCTCTTGCTGGTGGTACTAGCTATGGAAAGCTGACATTT CILPLAGGTSYGKLTF TRAV26-2*01 TRAJ52*01 60.0 1718.0 TGTGCCAGCAGCTTAGGGCAAGCCTACGAGCAGTACTTC CASSLGQAYEQYF TRBV7-8*01 TRBJ2-7*01 30.0 1237.0 CILPLAGGTSYGKLTF_CASSLGQAYEQYF 308 4002 EBNA3A-193-201 EBV 0.77 1022 NEG 223 3779 10 EBV EBNA3A FLRGRAYGL effector memory T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-B*08:01 B2M MHCI -6617 chip0423_3103 8.74 11.3 Chip2 T1D_5 T1D TGTGCAGCAAGGGAAACCTCCTACGACAAGGTGATATTT CAARETSYDKVIF TRAV13-1*01 TRAJ50*01 19.0 1435.0 TGTGCCAGCAGCCCGTTGGGCACAGCCGACTCTGAAAACACCATATATTTT CASSPLGTADSENTIYF TRBV11-1*01 TRBJ1-3*01 43.0 1421.0 CAARETSYDKVIF_CASSPLGTADSENTIYF 1 3316 BZLF1-190-197 EBV 0.71 2156 NEG 214 3102 9 EBV BZLF1 RAKFKQLL effector memory T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-B*08:01 B2M MHCI -6618 chip0423_400716 15.3 9.76 Chip2 T1D_6 T1D TGCATCGCCATTACCTCGTCCCGGTAACCAGTTCTATTTT CIAITStc??ccGNQFYF TRAV26-1*01 TRAJ49*01 4.0 353.0 TGCAGCGCCGGCAGGGACGGGACTAATGAAAAACTGTTTTTT CSAGRDGTNEKLFF TRBV29-1*01 TRBJ1-4*01 81.0 6056.0 CIAITStc??ccGNQFYF_CSAGRDGTNEKLFF 1 2990 EBV-BLMF1 EBV 0.46 2531 NEG 248 2742 12 EBV BLMF1 GLCTLVAML effector T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*02:01 B2M MHCI -6619 chip0423_351051 -4.16 9.98 Chip2 T1D_6 T1D TGTGCTCTGAGTGAGGTTACAGCAGGAGGAAGCTACATACCTACATTT CALSEVTAGGSYIPTF TRAV19*01 TRAJ6*01 31.0 1502.0 TGTGCCAGTAGTCCCCGGGACACAGCGCAAGAGACCCAGTACTTC CASSPRDTAQETQYF TRBV19*01 TRBJ2-5*01 49.0 1616.0 CALSEVTAGGSYIPTF_CASSPRDTAQETQYF 1 5564 PTPRN-797-805 PTPRN 0.72 12 NEG 175 5389 2 HomoSapiens PTPRN MVWESGCTV Naive T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*02:01 B2M MHCI -6620 chip0423_146026 11.35 7.87 Chip2 T1D_6 T1D TCTCCAGCAAGCAACATAGATGAGGAGGTTCTGCTGGCCTCACCTTT SPASNIDga?GGSAGLTF TRAV23/DV6*01 TRAJ45*01 3.0 254.0 TGTGCCAGCAGCTTGGGACAGGCCTACGAGCAGTACTTC CASSLGQAYEQYF TRBV7-8*01 TRBJ2-7*01 9.0 330.0 SPASNIDga?GGSAGLTF_CASSLGQAYEQYF 1 7615 EBNA3A-193-201 EBV 0.84 1022 EBNA3A-193-201 244 7371 10 EBV EBNA3A FLRGRAYGL effector memory T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-B*08:01 B2M MHCI -6621 chip0423_347683 -1.74 8.81 Chip2 T1D_6 T1D TGTGCAATGAGTAGATCTAACTTTGGAAATGAGAAATTAACCTTT CAMSRSNFGNEKLTF TRAV12-3*01 TRAJ48*01 63.0 2074.0 TGTGCCAGCAGCCAAGAAGATCGAGAGGGACTTAACAATGAGCAGTTCTTC CASSQEDREGLNNEQFF TRBV14*01 TRBJ2-1*01 21.0 599.0 CAMSRSNFGNEKLTF_CASSQEDREGLNNEQFF 1 7222 PGT-178 PGT 0.82 1480 NEG 183 7039 3 HomoSapiens PGT LLAGIGTVPI Naive T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*02:01 B2M MHCI -6622 chip0423_709111 -2.61 9.62 Chip2 T1D_4 T1D _ 6746 6034 PGT-178 PGT 0.44 1480 NEG 156 5878 2 HomoSapiens PGT LLAGIGTVPI Naive T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*02:01 B2M MHCI -6623 chip0423_175598 -1.25 9.1 Chip2 T1D_6 T1D TGTGCCGTCGCAGGAGGAGGTGCTGACGGACTCACCTTT CAVAGGGADGLTF TRAV12-2*01 TRAJ45*01 37.0 3408.0 TGTGCCAGCAGTTTTTGGGGGCTCGGCTACACCTTC CASSFWGLGYTF TRBV12-3*01,TRBV12-4*01 TRBJ1-2*01 22.0 2005.0 CAVAGGGADGLTF_CASSFWGLGYTF 1 8703 MART1-ALA MART1 0.6 269 MART1-ALA 176 8527 3 HomoSapiens MART1 ALAGIGILTV Naive T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*02:01 B2M MHCI -6624 chip0423_34961 6.53 10.35 Chip2 T1D_6 T1D TGCGCCAGCAGTGACATTAGGGAGGGGCAGGGTGAAGCTTTCTTT CASSDIREGQGEAFF TRBV10-2*01 TRBJ1-1*01 59.0 2488.0 _CASSDIREGQGEAFF 37 9692 EBNA3A-158-166 EBV 0.95 444 EBNA3A-158-166 211 9481 6 EBV EBNA3A QAKWRLQTL central memory T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-B*08:01 B2M MHCI -6625 chip0423_595735 8.93 8.85 Chip2 T1D_4 T1D TGCATCCTGCCTCTTGCTGGTGGTACTAGCTATGGAAAGCTGACATTT CILPLAGGTSYGKLTF TRAV26-2*01 TRAJ52*01 32.0 2029.0 TGTGCCAGCAGCTTAGGGCAAGCCTACGAGCAGTACTTC CASSLGQAYEQYF TRBV7-8*01 TRBJ2-7*01 42.0 2107.0 CILPLAGGTSYGKLTF_CASSLGQAYEQYF 308 7016 EBNA3A-193-201 EBV 0.91 1022 EBNA3A-193-201 195 6821 8 EBV EBNA3A FLRGRAYGL effector memory T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-B*08:01 B2M MHCI -6626 chip0423_877702 -2.21 9.79 Chip2 T1D_4 T1D TGTGCAAGCACGATATCTAACTTTGGAAATGAGAAATTAACCTTT CASTISNFGNEKLTF TRAV12-3*01 TRAJ48*01 72.0 2597.0 TGTGCCCGCAGCCCCGGCGGGAGACGGAGCCCCCGAGATGAGACCCAGTACTTC CARSPGGRRSPRDETQYF TRBV5-6*01 TRBJ2-5*01 15.0 473.0 CASTISNFGNEKLTF_CARSPGGRRSPRDETQYF 1 6315 PGT-178 PGT 0.62 1480 NEG 174 6141 3 HomoSapiens PGT LLAGIGTVPI Naive T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*02:01 B2M MHCI -6627 chip0423_240648 9.75 7.96 Chip2 T1D_4 T1D TGTGCTGTGAGTGATGGAGAAGGAGCCCAGAAGCTGGTATTT CAVSDGEGAQKLVF TRAV8-6*01 TRAJ54*01 3.0 20.0 TGTGCCAGCAGCTTAACGGTTCTGGCAGGTCCAAACACTGAAGCTTTCTTT CASSLTVLAGPNTEAFF TRBV7-3*01 TRBJ1-1*01 104.0 3522.0 CAVSDGEGAQKLVF_CASSLTVLAGPNTEAFF 44 5653 BZLF1-190-197 EBV 0.9 2156 BZLF1-190-197 197 5456 8 EBV BZLF1 RAKFKQLL effector memory T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-B*08:01 B2M MHCI -6628 chip0423_26593 13.41 8.4 Chip2 T1D_6 T1D TGCATCCTCCCACTTGCTGGTGGTACTAGCTATGGAAAGCTGACATTT CILPLAGGTSYGKLTF TRAV26-2*01 TRAJ52*01 16.0 869.0 TGTGCCAGCAGCTTGGGACAGGCCTACGAGCAGTACTTC CASSLGQAYEQYF TRBV7-8*01 TRBJ2-7*01 4.0 259.0 CILPLAGGTSYGKLTF_CASSLGQAYEQYF 308 5112 EBNA3A-193-201 EBV 0.57 1022 NEG 223 4889 10 EBV EBNA3A FLRGRAYGL effector memory T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-B*08:01 B2M MHCI -6629 chip0423_858844 11.3 6.74 Chip2 T1D_4 T1D TGCGCCAGCAGTGATGACGGAATGAACACTGAAGCTTTCTTT CASSDDGMNTEAFF TRBV10-2*01 TRBJ1-1*01 28.0 898.0 _CASSDDGMNTEAFF 8 7872 EBV-LMP2A EBV 0.79 700 EBV-LMP2A 182 7690 6 EBV LMP2A CLGGLLTMV central memory T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*02:01 B2M MHCI -6630 chip0423_531859 9.69 7.93 Chip2 T1D_4 T1D TGTGCCAGCAGCGTAGGGCGGGGGGAATACAATGAGCAGTTCTTC CASSVGRGEYNEQFF TRBV9*01 TRBJ2-1*01 29.0 1583.0 _CASSVGRGEYNEQFF 1 5668 BZLF1-190-197 EBV 0.82 2156 NEG 214 5454 8 EBV BZLF1 RAKFKQLL effector memory T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-B*08:01 B2M MHCI -6631 chip0423_741364 14.28 9.44 Chip2 T1D_4 T1D TGCATCGTCAGAGAGGGAGGAGGTGCTGACGGACTCACCTTT CIVREGGGADGLTF TRAV26-1*01 TRAJ45*01 2.0 61.0 TGTGCCAGCAGCTTAGCGGTCGGAGAAGGGCCCCAGCATTTT CASSLAVGEGPQHF TRBV7-9*01 TRBJ1-5*01 49.0 2565.0 CIVREGGGADGLTF_CASSLAVGEGPQHF 68 5112 BZLF1-190-197 EBV 0.88 2156 BZLF1-190-197 207 4905 12 EBV BZLF1 RAKFKQLL effector T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-B*08:01 B2M MHCI -6632 chip0423_467183 14.33 9.53 Chip2 T1D_6 T1D TGCATCCTCCCACTTGCTGGTGGTACTAGCTATGGAAAGCTGACATTT CILPLAGGTSYGKLTF TRAV26-2*01 TRAJ52*01 59.0 1990.0 TGTGCAGCAAGCAAGATAGAGGAGGAGGTGCTGACGGACTCACCTTT CAASKIEga?GGADGLTF TRAV23/DV6*01 TRAJ45*01 42.0 1079.0 0.34 TGTGCCAGCAGCTTGGGACAGGCCTACGAGCAGTACTTC CASSLGQAYEQYF TRBV7-8*01 TRBJ2-7*01 59.0 2520.0 CILPLAGGTSYGKLTF_CASSLGQAYEQYF 308 5685 EBNA3A-193-201 EBV 0.55 1022 NEG 180 5505 12 EBV EBNA3A FLRGRAYGL effector T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-B*08:01 B2M MHCI -6633 chip0423_474282 -3.12 9.78 Chip2 T1D_4 T1D TGTGCCGTGGTCTCTGCCAGACTCATGTTT CAVVSARLMF TRAV12-2*01 TRAJ31*01 4.0 357.0 TGTGCAGCAACGGAAACCTCCTACGACAAGGTGATATTT CAATETSYDKVIF TRAV13-1*01 TRAJ50*01 2.0 7.0 0.22 TGTGCCAGCAGTTCCTCGGACAGACCCAATGAGCAGTTCTTC CASSSSDRPNEQFF TRBV7-3*01 TRBJ2-1*01 1.0 55.0 CAVVSARLMF_CASSSSDRPNEQFF 1 5484 PGT-178 PGT 0.86 1480 NEG 178 5306 2 HomoSapiens PGT LLAGIGTVPI Naive T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*02:01 B2M MHCI -6634 chip0423_198248 11.24 6.89 Chip2 T1D_5 T1D TGTGCCGTTCGCCCCCTAGGGGGAAACACACCTCTTGTCTTT CAVRPLGGNTPLVF TRAV12-2*01 TRAJ29*01 55.0 3561.0 TGTGCTAGTGGTCCGGACATATCCTACTCCTACGAGCAGTACTTC CASGPDISYSYEQYF TRBV12-5*01 TRBJ2-7*01 67.0 3264.0 CAVRPLGGNTPLVF_CASGPDISYSYEQYF 3 6808 BZLF1-190-197 EBV 0.67 2156 NEG 223 6585 10 EBV BZLF1 RAKFKQLL effector memory T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-B*08:01 B2M MHCI -6635 chip0423_558381 -1.43 7.9 Chip2 T1D_6 T1D TGTGCCGTGAGGGGCCAGGCAGGAACTGCTCTGATCTTT CAVRGQAGTALIF TRAV12-2*01 TRAJ15*01 8.0 1017.0 TGTGCCAGCAGTGAGTGGGACCAGCGAAACACCATATATTTT CASSEWDQRNTIYF TRBV2*01 TRBJ1-3*01 20.0 927.0 CAVRGQAGTALIF_CASSEWDQRNTIYF 1 9553 ZNT8-YAY-8 ZNT8 0.86 54 NEG 187 9366 3 HomoSapiens ZNT8 YAYAKWKL Naive T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-B*08:01 B2M MHCI -6636 chip0423_329099 15.87 10.12 Chip2 T1D_5 T1D TGTGCAGCAAAAGAAACCTCCTACGACAAGGTGATATTT CAAKETSYDKVIF TRAV13-1*01 TRAJ50*01 98.0 6141.0 TGTGCCAGCAGCTTATTAGGACGATCGAACACTGAAGCTTTCTTT CASSLLGRSNTEAFF TRBV7-9*01 TRBJ1-1*01 51.0 1484.0 CAAKETSYDKVIF_CASSLLGRSNTEAFF 13 3531 BZLF1-190-197 EBV 0.56 2156 NEG 184 3347 12 EBV BZLF1 RAKFKQLL effector T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-B*08:01 B2M MHCI -6637 chip0423_679532 14.98 8.77 Chip2 T1D_5 T1D TGTGCCAGCAGTCCCCCGGGGAGAAATGAAAAACTGTTTTTT CASSPPGRNEKLFF TRAV9-2*01 TRAJ5*01 6.0 33.0 TGTGCCAGCAGTCCCCCGGGGAGAAATGAAAAACTGTTTTTT CASSPPGRNEKLFF TRBV12-3*01,TRBV12-4*01 TRBJ1-4*01 103.0 4435.0 CASSPPGRNEKLFF_CASSPPGRNEKLFF 11 2374 BZLF1-190-197 EBV 0.8 2156 NEG 208 2166 12 EBV BZLF1 RAKFKQLL effector T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-B*08:01 B2M MHCI -6638 chip0423_817388 13.09 7.29 Chip2 T1D_5 T1D TGTGCTAGTGGTCCGGACATATCCTACTCCTACGAGCAGTACTTC CASGPDISYSYEQYF TRBV12-5*01 TRBJ2-7*01 20.0 890.0 _CASGPDISYSYEQYF 10 3585 BZLF1-190-197 EBV 0.56 2156 NEG 202 3383 10 EBV BZLF1 RAKFKQLL effector memory T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-B*08:01 B2M MHCI -6639 chip0423_593620 16.03 9.87 Chip2 T1D_5 T1D TGTGCCAGCAGCTCCGGACTAGCGGGGGGCTCTCACACCGGGGAGCTGTTTTTT CASSSGLAGGSHTGELFF TRBV11-1*01 TRBJ2-2*01 68.0 2661.0 _CASSSGLAGGSHTGELFF 14 4062 BZLF1-190-197 EBV 0.71 2156 NEG 184 3878 12 EBV BZLF1 RAKFKQLL effector T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-B*08:01 B2M MHCI -6640 chip0423_725285 13.53 8.72 Chip2 T1D_4 T1D TGCATCGTCAGAGAGGGAGGAGGTGCTGACGGACTCACCTTT CIVREGGGADGLTF TRAV26-1*01 TRAJ45*01 30.0 1750.0 TGTGCCAGCAGCTTAGCGGTCGGAGAAGGGCCCCAGCATTTT CASSLAVGEGPQHF TRBV7-9*01 TRBJ1-5*01 44.0 2303.0 CIVREGGGADGLTF_CASSLAVGEGPQHF 68 3774 BZLF1-190-197 EBV 0.93 2156 BZLF1-190-197 239 3535 10 EBV BZLF1 RAKFKQLL effector memory T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-B*08:01 B2M MHCI -6641 chip0423_499374 9.42 10.35 Chip2 T1D_5 T1D TGTGCAGCGGCGGAAACCTCCTACGACAAGGTGATATTT CAAAETSYDKVIF TRAV13-1*01 TRAJ50*01 2.0 238.0 TGTGCCAGCCAACTAGCGGGAGGCACCGGGGAGCTGTTTTTT CASQLAGGTGELFF TRBV24-1*01 TRBJ2-2*01 20.0 1047.0 CAAAETSYDKVIF_CASQLAGGTGELFF 131 4564 BZLF1-190-197 EBV 0.68 2156 NEG 191 4373 9 EBV BZLF1 RAKFKQLL effector memory T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-B*08:01 B2M MHCI -6642 chip0423_840470 6.57 14.12 Chip2 T1D_5 T1D TGTGCCAGCAGCTTCACTAGCGGGACAGATCCTGAGCTGTTTTTT CASSFTSGTDPELFF TRBV7-9*01 TRBJ2-2*01 60.0 2845.0 _CASSFTSGTDPELFF 17 3378 BZLF1-190-197 EBV 0.56 2156 NEG 191 3187 7 EBV BZLF1 RAKFKQLL transitional T cells between effector and memory populations PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-B*08:01 B2M MHCI -6643 chip0423_236677 7.01 11.36 Chip2 T1D_5 T1D TGTGCCAGCAGCTCCTTAAGCGAGGGGGCAGGAAATGAGCAGTTCTTC CASSSLSEGAGNEQFF TRBV7-9*01 TRBJ2-1*01 28.0 1263.0 _CASSSLSEGAGNEQFF 1 5474 BZLF1-190-197 EBV 0.83 2156 NEG 193 5281 7 EBV BZLF1 RAKFKQLL transitional T cells between effector and memory populations PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-B*08:01 B2M MHCI -6644 chip0423_352495 9.12 9.38 Chip2 T1D_6 T1D TGTGCCGTGTGGGCAGGCAACATGCTCACCTTT CAVWAGNMLTF TRAV8-1*01 TRAJ39*01 7.0 915.0 CAVWAGNMLTF_ 2 6825 EBV-BRLF1 EBV 0.64 1264 NEG 212 6613 8 EBV BRLF1 YVLDHLIVV effector memory T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*02:01 B2M MHCI -6645 chip0423_174448 13.06 7.67 Chip2 T1D_4 T1D TGTGCTGTGAGTGATGGAGAAGGAGCCCAGAAGCTGGTATTT CAVSDGEGAQKLVF TRAV8-6*01 TRAJ54*01 26.0 1045.0 TGTGCCAGCAGCTTAACGGTTCTGGCAGGTCCAAACACTGAAGCTTTCTTT CASSLTVLAGPNTEAFF TRBV7-3*01 TRBJ1-1*01 30.0 1632.0 CAVSDGEGAQKLVF_CASSLTVLAGPNTEAFF 44 5738 BZLF1-190-197 EBV 0.85 2156 BZLF1-190-197 226 5512 10 EBV BZLF1 RAKFKQLL effector memory T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-B*08:01 B2M MHCI -6646 chip0423_733946 8.77 9.85 Chip2 T1D_4 T1D TGTGCCGTGAAGGACACCGACAAGCTCATCTTT CAVKDTDKLIF TRAV8-1*01 TRAJ34*01 19.0 2009.0 TGTGCCAGCAGTGAGTGGGAGCTGAACTATGGCTACACCTTC CASSEWELNYGYTF TRBV25-1*01 TRBJ1-2*01 40.0 1966.0 CAVKDTDKLIF_CASSEWELNYGYTF 1 4924 EBV-BRLF1 EBV 0.88 1264 EBV-BRLF1 219 4705 8 EBV BRLF1 YVLDHLIVV effector memory T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*02:01 B2M MHCI -6647 chip0423_462718 10.66 10.3 Chip2 T1D_4 T1D _ 6746 4940 BZLF1-190-197 EBV 0.95 2156 BZLF1-190-197 225 4715 9 EBV BZLF1 RAKFKQLL effector memory T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-B*08:01 B2M MHCI -6648 chip0423_323674 8.9 9.9 Chip2 T1D_4 T1D TGTGCTTATATAATAGGATGACCTCAGGAACCTACAAATACATCTTT CAYIIG*cc?SGTYKYIF TRAV38-2/DV8*01 TRAJ40*01 1.0 25.0 CAYIIG*cc?SGTYKYIF_ 1 8925 EBNA3A-193-201 EBV 0.77 1022 EBNA3A-193-201 223 8702 8 EBV EBNA3A FLRGRAYGL effector memory T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-B*08:01 B2M MHCI -6649 chip0423_713129 -2.13 7.11 Chip2 T1D_4 T1D TGTGCCCCCTACCGCCTCTATGGAGGAAGCCAAGGAAATCTCATCTTT CAPYRLYGGSQGNLIF TRAV8-1*01 TRAJ42*01 21.0 805.0 TGTGCCAGCAGTGAATATGACAGGGGTACTGGGGCCAACGTCCTGACTTTC CASSEYDRGTGANVLTF TRBV25-1*01 TRBJ2-6*01 46.0 1767.0 CAPYRLYGGSQGNLIF_CASSEYDRGTGANVLTF 1 7893 EBV-BRLF1 EBV 0.57 1264 NEG 194 7699 3 EBV BRLF1 YVLDHLIVV Naive T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*02:01 B2M MHCI -6650 chip0423_301531 8.66 8.6 Chip2 T1D_6 T1D TGCATCGCCGTTACCTCGTCCCGGTAACCAGTTCTATTTT CIAVTStc??ccGNQFYF TRAV26-1*01 TRAJ49*01 1.0 92.0 TGCAGCGCCGGCAGGGACGGGACTAATGAAAAACTGTTTTTT CSAGRDGTNEKLFF TRBV29-1*01 TRBJ1-4*01 118.0 6075.0 CIAVTStc??ccGNQFYF_CSAGRDGTNEKLFF 6 6774 EBV-BLMF1 EBV 0.5 2531 NEG 206 6568 8 EBV BLMF1 GLCTLVAML effector memory T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*02:01 B2M MHCI -6651 chip0423_215076 12.01 6.79 Chip2 T1D_4 T1D TGTGCTGTGAGAGACACGACGTGGGATGACAAGATCATCTTT CAVRDTTWDDKIIF TRAV3*01 TRAJ30*01 40.0 1544.0 TGTGTGGTGAGCTGAATTATGGAGGAAGCCAAGGAAATCTCATCTTT CVVS*IMga?GSQGNLIF TRAV10*01 TRAJ42*01 30.0 756.0 0.34 TGTGCCAGCAGCTTAGGAGGGGGAGAGGGGGCCAGTGAGCAGTTCTTC CASSLGGGEGASEQFF TRBV7-6*01 TRBJ2-1*01 7.0 476.0 CAVRDTTWDDKIIF_CASSLGGGEGASEQFF 12 5246 EBNA3A-193-201 EBV 0.48 1022 NEG 228 5018 10 EBV EBNA3A FLRGRAYGL effector memory T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-B*08:01 B2M MHCI -6652 chip0423_142877 7.74 10.53 Chip2 T1D_4 T1D TGTGCAATGAGCGAGGACGGCTTTTGGATTGTGCTGCATTCCGGGTCCGGCACTCAAGTG CAMSEDGFWIVLHSGSGTQV TRAV12-3*01 TRAJ41*01 4.0 20.0 TGTGCCAGCAGCCCGGGACCCAACACTGAAGCTTTCTTT CASSPGPNTEAFF TRBV4-2*01 TRBJ1-1*01 14.0 498.0 CAMSEDGFWIVLHSGSGTQV_CASSPGPNTEAFF 1 7630 BZLF1-190-197 EBV 0.48 2156 BZLF1-190-197 196 7434 7 EBV BZLF1 RAKFKQLL transitional T cells between effector and memory populations PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-B*08:01 B2M MHCI -6653 chip0423_117169 -2.79 11.42 Chip2 T1D_4 T1D TGTGCTGTGGAGGCCCCGCCGTCAAACTGGGGCAAACAACCTCTTCTTT CAVEAPPS??aTGANNLFF TRAV2*01 TRAJ36*01 72.0 2459.0 TGCAGCGTTGAAGATCCAGTTGCAGGGTCGGGCTATGGCTACACCTTC CSVEDPVAGSGYGYTF TRBV29-1*01 TRBJ1-2*01 121.0 6270.0 CAVEAPPS??aTGANNLFF_CSVEDPVAGSGYGYTF 1 4965 PGT-178 PGT 0.58 1480 PGT-178 182 4783 1 HomoSapiens PGT LLAGIGTVPI Naive T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*02:01 B2M MHCI -6654 chip0423_625277 8.08 10.82 Chip2 T1D_5 T1D TGTGCAGCGGCGGAAACCTCCTACGACAAGGTGATATTT CAAAETSYDKVIF TRAV13-1*01 TRAJ50*01 17.0 2037.0 TGTGCCAGCCAACTAGCGGGAGGCACCGGGGAGCTGTTTTTT CASQLAGGTGELFF TRBV24-1*01 TRBJ2-2*01 43.0 2751.0 CAAAETSYDKVIF_CASQLAGGTGELFF 131 5676 BZLF1-190-197 EBV 0.62 2156 NEG 193 5483 7 EBV BZLF1 RAKFKQLL transitional T cells between effector and memory populations PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-B*08:01 B2M MHCI -6655 chip0423_642570 10.24 11.02 Chip2 T1D_5 T1D TGTGCAGCGGCGGAAACCTCCTACGACAAGGTGATATTT CAAAETSYDKVIF TRAV13-1*01 TRAJ50*01 10.0 505.0 TGTGCCAGCCAACTAGCGGGAGGCACCGGGGAGCTGTTTTTT CASQLAGGTGELFF TRBV24-1*01 TRBJ2-2*01 17.0 872.0 CAAAETSYDKVIF_CASQLAGGTGELFF 131 5203 BZLF1-190-197 EBV 0.4 2156 NEG 223 4980 9 EBV BZLF1 RAKFKQLL effector memory T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-B*08:01 B2M MHCI -6656 chip0423_605772 6.32 14.1 Chip2 T1D_5 T1D TGTGCAGGATTCCCGTGGGCTGCAGGCAACAAGCTAACTTTT CAGFPWAAGNKLTF TRAV25*01 TRAJ17*01 22.0 2716.0 TGTGCCAGTAGTATGATGACAGGGGATTCCTATAATTCACCCCTCCACTTT CASSMMTGDSYNSPLHF TRBV19*01 TRBJ1-6*01 4.0 48.0 CAGFPWAAGNKLTF_CASSMMTGDSYNSPLHF 2 4222 NP44-52 FLU 0.96 474 NP44-52 188 4034 7 InfluenzaA NP CTELKLSDY transitional T cells between effector and memory populations PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*01:01 B2M MHCI -6657 chip0423_127942 -0.6 9.82 Chip2 T1D_5 T1D TGCGCTACCCTGGGGCAACCTCCCTCTTCTTT CATLGc?aTSLFF TRAV22*01 TRAJ36*01 2.0 25.0 TGTGCCAGCCAACCGGGACAGGGGGCAGACGAGCAGTACTTC CASQPGQGADEQYF TRBV19*01 TRBJ2-7*01 11.0 439.0 CATLGc?aTSLFF_CASQPGQGADEQYF 1 5984 INS-GSH-9 INS 0.71 19 INS-GSH-9 178 5806 3 HomoSapiens INS GSHLVEALY Naive T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*01:01 B2M MHCI -6658 chip0423_77136 10.36 8.31 Chip2 T1D_5 T1D TGTGCAGAGATGGAAACCTCCTACGACAAGGTGATATTT CAEMETSYDKVIF TRAV13-2*01 TRAJ50*01 16.0 2027.0 TGTGCCAGCAGCTCCTTAAGCAGGGGGGCAGGAAATGAGCAGTTCTTC CASSSLSRGAGNEQFF TRBV7-9*01 TRBJ2-1*01 28.0 1326.0 CAEMETSYDKVIF_CASSSLSRGAGNEQFF 1 4978 BZLF1-190-197 EBV 0.5 2156 NEG 177 4801 10 EBV BZLF1 RAKFKQLL effector memory T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-B*08:01 B2M MHCI -6659 chip0423_431043 12.47 8.76 Chip2 T1D_4 T1D TGTGCCAGCAGCCAAGTCAACAACCCGGGGGATGGCTACACCTTC CASSQVNNPGDGYTF TRBV14*01 TRBJ1-2*01 23.0 724.0 _CASSQVNNPGDGYTF 94 3924 EBNA3A-158-166 EBV 0.44 444 NEG 217 3707 10 EBV EBNA3A QAKWRLQTL effector memory T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-B*08:01 B2M MHCI -6660 chip0423_170246 10.74 6.92 Chip2 T1D_6 T1D TGCATCCTCCCACTTGCTGGTGGTACTAGCTATGGAAAGCTGACATTT CILPLAGGTSYGKLTF TRAV26-2*01 TRAJ52*01 39.0 2000.0 TGTGCAGCAAGCAAGATAGAGGAGGAGGTGCTGACGGACTCACCTTT CAASKIEga?GGADGLTF TRAV23/DV6*01 TRAJ45*01 53.0 1944.0 0.44 TGTGCCAGCAGCTTGGGACAGGCCTACGAGCAGTACTTC CASSLGQAYEQYF TRBV7-8*01 TRBJ2-7*01 30.0 1917.0 CILPLAGGTSYGKLTF_CASSLGQAYEQYF 308 8569 EBNA3A-193-201 EBV 0.73 1022 EBNA3A-193-201 214 8355 10 EBV EBNA3A FLRGRAYGL effector memory T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-B*08:01 B2M MHCI -6661 chip0423_59682 -2.69 13.28 Chip2 T1D_4 T1D TGTGCAATCAGCTTATCTAACTTTGCTTCTGGGACCTTAGCCTTT CAISLSNFASGTLAF TRAV12-3*01 TRAJ48*01 3.0 67.0 TGTGCCAGCAGCTTAGAGGAGCGGGGATTCACAGATACGCAGTATTTT CASSLEERGFTDTQYF TRBV11-2*01 TRBJ2-3*01 25.0 534.0 CAISLSNFASGTLAF_CASSLEERGFTDTQYF 1 3825 PGT-178 PGT 0.77 1480 PGT-178 183 3642 1 HomoSapiens PGT LLAGIGTVPI Naive T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*02:01 B2M MHCI -6662 chip0423_403231 12.57 8.13 Chip2 T1D_4 T1D TGTGCTTATAGGAGCGCGGAGTGGGAGAACAATGCCAGACTCATGTTT CAYRSAEWENNARLMF TRAV38-2/DV8*01 TRAJ31*01 6.0 150.0 TGTGCCAGCAGCTTCGTACTAGCGGGGGGGCAAGGAGCAGATACGCAGTATTTT CASSFVLAGGQGADTQYF TRBV7-3*01 TRBJ2-3*01 4.0 123.0 CAYRSAEWENNARLMF_CASSFVLAGGQGADTQYF 1 4148 BZLF1-190-197 EBV 0.57 2156 NEG 209 3939 10 EBV BZLF1 RAKFKQLL effector memory T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-B*08:01 B2M MHCI -6663 chip0423_11593 -4.68 9.17 Chip2 T1D_6 T1D CGTGCTCTGAGTGATGGTGGACAAGCTCCCGGGCCGGGGCGCACTTCCTTTT RALSDGGQgc??tcPGRGALPF TRAV9-2*01 TRAJ5*01 37.0 1870.0 TGTGCCAGCAGCCAGGGCACCTACGAGCAGTACTTC CASSQGTYEQYF TRBV3-1*01 TRBJ2-7*01 36.0 2698.0 RALSDGGQgc??tcPGRGALPF_CASSQGTYEQYF 1 6258 IGRP-228-236 IGRP 0.67 16 IGRP-228-236 166 6092 2 HomoSapiens IGRP LNIDLLWSV Naive T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*02:01 B2M MHCI -6664 chip0423_545718 10.44 7.51 Chip2 T1D_4 T1D _ 6746 6048 BZLF1-190-197 EBV 0.71 2156 BZLF1-190-197 230 5818 10 EBV BZLF1 RAKFKQLL effector memory T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-B*08:01 B2M MHCI -6665 chip0423_872536 13.37 7.06 Chip2 T1D_4 T1D TGTGCTGTCCCTTCGGGGCCCCCCCCTCTTGTCTTT CAVPSGPPPLVF TRAV1-2*01 TRAJ29*01 6.0 384.0 TGTGCCAGCAGCCAAGTCAACAACCCGGGGGATGGCTACACCTTC CASSQVNNPGDGYTF TRBV14*01 TRBJ1-2*01 12.0 244.0 CAVPSGPPPLVF_CASSQVNNPGDGYTF 1 4218 EBNA3A-158-166 EBV 0.78 444 NEG 200 4018 10 EBV EBNA3A QAKWRLQTL effector memory T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-B*08:01 B2M MHCI -6666 chip0423_449053 14.72 10.62 Chip2 T1D_4 T1D TGCATCGTCAGAGAGGGAGGAGGTGCTGACGGACTCACCTTT CIVREGGGADGLTF TRAV26-1*01 TRAJ45*01 18.0 1079.0 TGTGCCAGCAGCTTAGCGGTCGGAGAAGGGCCCCAGCATTTT CASSLAVGEGPQHF TRBV7-9*01 TRBJ1-5*01 80.0 2317.0 CIVREGGGADGLTF_CASSLAVGEGPQHF 68 3809 BZLF1-190-197 EBV 0.92 2156 BZLF1-190-197 184 3625 12 EBV BZLF1 RAKFKQLL effector T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-B*08:01 B2M MHCI -6667 chip0423_800783 9.2 9.67 Chip2 T1D_4 T1D TGTGCCAGCAGCTCAGGGACAGGTGAGGGGTATGAGCAGTTCTTC CASSSGTGEGYEQFF TRBV7-3*01 TRBJ2-1*01 35.0 1627.0 _CASSSGTGEGYEQFF 2 4749 BZLF1-190-197 EBV 0.54 2156 BZLF1-190-197 202 4547 8 EBV BZLF1 RAKFKQLL effector memory T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-B*08:01 B2M MHCI -6668 chip0423_783010 7.26 12.46 Chip2 healthy_3 healthy TGTGTGGTGAACGGGGAAAATGCCAGACTCATGTTT CVVNGENARLMF TRAV12-1*01 TRAJ31*01 22.0 1924.0 TGTGCCAGCAGTGAAATGTGGGGAGCACCCCTCCACTTT CASSEMWGAPLHF TRBV2*01 TRBJ1-6*01 10.0 439.0 CVVNGENARLMF_CASSEMWGAPLHF 12 6061 NP44-52 FLU 0.79 474 NP44-52 146 5915 7 InfluenzaA NP CTELKLSDY transitional T cells between effector and memory populations PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*01:01 B2M MHCI -6669 chip0423_481345 16.02 10.02 Chip2 T1D_5 T1D TGTGCCAGCAGCTTATTGGGCCAGTACACCGGGGAGCTGTTTTTT CASSLLGQYTGELFF TRBV7-2*01 TRBJ2-2*01 45.0 1896.0 _CASSLLGQYTGELFF 3 2623 BZLF1-190-197 EBV 0.64 2156 NEG 195 2428 12 EBV BZLF1 RAKFKQLL effector T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-B*08:01 B2M MHCI -6670 chip0423_408675 -1.89 7.88 Chip2 healthy_3 healthy TGTGCTCTGGAATATGGAAACAAACTGGTCTTT CALEYGNKLVF TRAV38-1*01 TRAJ47*01 23.0 2173.0 TGTGCCAGCAGCCCCGGACGGCAAACCTACGAGCAGTACTTC CASSPGRQTYEQYF TRBV5-4*01 TRBJ2-7*01 30.0 2072.0 CALEYGNKLVF_CASSPGRQTYEQYF 1 5447 GAD2-QQD-10 GAD65 0.59 7 GAD2-QQD-10 192 5255 3 HomoSapiens GAD2 QQDKHYDLSY Naive T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*01:01 B2M MHCI -6671 chip0423_302303 7.5 12.26 Chip2 T1D_6 T1D TGTGCTGTCTCTGGCAACACAGGCAAACTAATCTTT CAVSGNTGKLIF TRAV20*01 TRAJ37*01 60.0 3356.0 TGCGCCAGCAGCCAATGGGACAATCAGCCCCAGCATTTT CASSQWDNQPQHF TRBV4-1*01 TRBJ1-5*01 68.0 3255.0 CAVSGNTGKLIF_CASSQWDNQPQHF 4 6217 INS-WMR-8 INS 0.49 17 INS-WMR-8 192 6025 7 HomoSapiens INS WMRLLPLL transitional T cells between effector and memory populations PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-B*08:01 B2M MHCI -6672 chip0423_101478 6.16 12.3 Chip2 T1D_5 T1D TGTGCCAGCTCCTTTATCGGTATAATCGCTGAAGCTTTCTTC CASSFIGIIAEAFF TRBV7-9*01 TRBJ1-1*01 35.0 1811.0 _CASSFIGIIAEAFF 1 5842 gp160-586-593 HIV 0.57 30 gp160-586-593 158 5684 7 HIV-1 gp160 YLKDQQLL transitional T cells between effector and memory populations PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-B*08:01 B2M MHCI -6673 chip0423_813509 10.48 9.8 Chip2 T1D_5 T1D TGCATCTATAACACGGGAGGAGGAAACAAACTCACCTTT CIYNTGGGNKLTF TRAV26-2*01 TRAJ10*01 40.0 1959.0 TGTGCCAGCAACTTGCTACAGGGGGACACTGAAGCTTTCTTT CASNLLQGDTEAFF TRBV7-9*01 TRBJ1-1*01 46.0 1887.0 CIYNTGGGNKLTF_CASNLLQGDTEAFF 1 4507 BZLF1-190-197 EBV 0.67 2156 BZLF1-190-197 183 4324 9 EBV BZLF1 RAKFKQLL effector memory T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-B*08:01 B2M MHCI -6674 chip0423_96356 9.64 7.7 Chip2 T1D_4 T1D TGTGCCAGCAGCTTAGCGGTCGGAGAAGGGCCCCAGCATTTT CASSLAVGEGPQHF TRBV7-9*01 TRBJ1-5*01 12.0 335.0 _CASSLAVGEGPQHF 113 5056 BZLF1-190-197 EBV 0.8 2156 BZLF1-190-197 198 4858 8 EBV BZLF1 RAKFKQLL effector memory T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-B*08:01 B2M MHCI -6675 chip0423_592052 10.94 10.61 Chip2 T1D_5 T1D TGTGCAGCAACGGAAACCTCCTACGACAAGGTGATATTT CAATETSYDKVIF TRAV13-1*01 TRAJ50*01 36.0 2079.0 TGTGCCAGCAACTTGCTACAGAGGGACACTGAAGCTTTCTTT CASNLLQRDTEAFF TRBV7-9*01 TRBJ1-1*01 4.0 68.0 CAATETSYDKVIF_CASNLLQRDTEAFF 1 4118 BZLF1-190-197 EBV 0.67 2156 NEG 192 3926 9 EBV BZLF1 RAKFKQLL effector memory T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-B*08:01 B2M MHCI -6676 chip0423_316239 11.43 7.22 Chip2 T1D_4 T1D TGCATCCGCCCGTTGGCTGGTGGTACTCGCTATGGAACGCTGGCGTTT CIRPLAGGTRYGTLAF TRAV26-2*01 TRAJ52*01 6.0 217.0 TGTGCCAGCAGCCAAGGACAGGCCTACGAGCAGTACTCC CASSQGQAYEQYS TRBV7-8*01 TRBJ2-7*01 8.0 447.0 CIRPLAGGTRYGTLAF_CASSQGQAYEQYS 1 4338 EBNA3A-193-201 EBV 0.62 1022 NEG 199 4139 10 EBV EBNA3A FLRGRAYGL effector memory T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-B*08:01 B2M MHCI -6677 chip0423_723239 -0.48 9.65 Chip2 T1D_6 T1D TGTGTGGTGAAATTAGAATTCCGGGTATGCACTCACCTTC CVVKLEtt??ccGYALTF TRAV12-1*01 TRAJ41*01 27.0 1554.0 TGTGCCAGCAGCCGAGGGACATCTGAAGCTTTCTTT CASSRGTSEAFF TRBV27*01 TRBJ1-1*01 14.0 739.0 CVVKLEtt??ccGYALTF_CASSRGTSEAFF 1 7153 INS-MAL-8 INS 0.53 38 INS-MAL-8 193 6960 3 HomoSapiens INS MALWMRLL Naive T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-B*08:01 B2M MHCI -6678 chip0423_357889 11.09 9.21 Chip2 T1D_4 T1D TGTGCCAGCAGCCAAGTCAACAACCCGGGGGATGGCTACACCTTC CASSQVNNPGDGYTF TRBV14*01 TRBJ1-2*01 7.0 318.0 _CASSQVNNPGDGYTF 94 5960 EBNA3A-158-166 EBV 0.78 444 EBNA3A-158-166 241 5719 10 EBV EBNA3A QAKWRLQTL effector memory T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-B*08:01 B2M MHCI -6679 chip0423_168752 -2.55 7.93 Chip2 T1D_6 T1D TGTGCCGCGTTTATCACTGACCTGCGCTTT CAAFITDLRF TRAV12-2*01 TRAJ43*01 2.0 172.0 TGCAGCGTTGCAGGGGTTGACTACGAGCAGTACTTC CSVAGVDYEQYF TRBV29-1*01 TRBJ2-7*01 3.0 88.0 CAAFITDLRF_CSVAGVDYEQYF 1 7028 MART1-ALA MART1 0.41 269 NEG 191 6837 3 HomoSapiens MART1 ALAGIGILTV Naive T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*02:01 B2M MHCI -6680 chip0423_77710 16.42 11.47 Chip2 T1D_6 T1D TGTGCAGCTAATTATGGAGGAAGCCAAGGAAATCTCATCTTT CAANYGGSQGNLIF TRAV25*01 TRAJ42*01 2.0 35.0 TGTGCCAGTAGTATTAGAAGCACAGATACGCAGTATTTT CASSIRSTDTQYF TRBV19*01 TRBJ2-3*01 13.0 427.0 CAANYGGSQGNLIF_CASSIRSTDTQYF 1 2766 M1 FLU 0.71 1250 NEG 215 2551 12 InfluenzaA M1 GILGFVFTL effector T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*02:01 B2M MHCI -6681 chip0423_60092 11.45 7.39 Chip2 T1D_4 T1D TGTGCCGGTTCTCGCACCGACCCGCTCATCTTT CAGSRTDPLIF TRAV27*01 TRAJ34*01 47.0 2828.0 TGTGCCAGCAGCTCGACAGGGGGCGGGGATCAGCCCCAGCATTTT CASSSTGGGDQPQHF TRBV7-9*01 TRBJ1-5*01 42.0 1435.0 CAGSRTDPLIF_CASSSTGGGDQPQHF 1 5255 BZLF1-190-197 EBV 0.4 2156 NEG 217 5038 10 EBV BZLF1 RAKFKQLL effector memory T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-B*08:01 B2M MHCI -6682 chip0423_29914 11.16 8.05 Chip2 T1D_5 T1D CTGCGCCAGCAGGTGGCCAGACAGACGATAATTCACCCCTCCACTTT LRQQVARca?DDNSPLHF TRAV20*01 TRAJ11*01 2.0 4.0 TGCAGCGCCGGAGGGAACACTGAAGCTTTCTTT CSAGGNTEAFF TRBV29-1*01 TRBJ1-1*01 173.0 11226.0 LRQQVARca?DDNSPLHF_CSAGGNTEAFF 1 4773 BZLF1-190-197 EBV 0.59 2156 NEG 236 4537 10 EBV BZLF1 RAKFKQLL effector memory T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-B*08:01 B2M MHCI -6683 chip0423_678191 -0.59 7.56 Chip2 healthy_3 healthy TGTGCTGTGAGCTCAGGGAGCCCAGAAGCTGGTATTT CAVSSG??aAQKLVF TRAV8-4*01 TRAJ54*01 2.0 45.0 CTGTGCCTCCAGTGATTTGCGGGTCGATGGCTATGAGCAGTTCTTC LCLQ*FAgg??tcDGYEQFF TRBV24-1*01 TRBJ2-1*01 5.0 191.0 CAVSSG??aAQKLVF_LCLQ*FAgg??tcDGYEQFF 1 8875 ZNT8-186-194 ZNT8 0.46 22 NEG 203 8672 3 HomoSapiens ZNT8 VAANIVLTV Naive T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*02:01 B2M MHCI -6684 chip0423_247298 10.15 6.71 Chip2 T1D_5 T1D TGTGCAATGAGAGAGGGCGAGGCTGGAGGCTTCAAAACTATCTTT CAMREGEAGGFKTIF TRAV14/DV4*01 TRAJ9*01 97.0 3608.0 TGCAGTGCTAACCCGCCGGGACGAGTTGGAGCTTTCTTT CSANPPGRVGAFF TRBV20-1*01 TRBJ1-1*01 36.0 1262.0 CAMREGEAGGFKTIF_CSANPPGRVGAFF 1 7069 BZLF1-190-197 EBV 0.46 2156 BZLF1-190-197 213 6856 10 EBV BZLF1 RAKFKQLL effector memory T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-B*08:01 B2M MHCI -6685 chip0423_300243 10.76 6.74 Chip2 T1D_6 T1D TGTGCCAGCAGAGCAAACAGTCTCTACGAGCAGTACTTC CASRANSLYEQYF TRBV2*01 TRBJ2-7*01 20.0 1706.0 _CASRANSLYEQYF 3 6396 NP140-148 FLU 0.88 102 NEG 214 6182 10 InfluenzaA NP HSNLNDATY effector memory T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*01:01 B2M MHCI -6686 chip0423_204688 -2.58 11.08 Chip2 healthy_3 healthy TGTGTGGTGAACAAGCTCAGCTTT CVVNKLSF TRAV12-1*01 TRAJ20*01 7.0 150.0 TGTGCCAGTAGTAGCGGAGGGGGCGCTGGATACGAGCAGTACTTC CASSSGGGAGYEQYF TRBV19*01 TRBJ2-7*01 49.0 2614.0 CVVNKLSF_CASSSGGGAGYEQYF 1 4926 NP140-148 FLU 0.41 102 NEG 196 4730 3 InfluenzaA NP HSNLNDATY Naive T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*01:01 B2M MHCI -6687 chip0423_9884 5.44 11.38 Chip2 T1D_4 T1D TGTGCTCTCACTACCTATGGTCAGAATTTTGTCTTT CALTTYGQNFVF TRAV38-1*01 TRAJ26*01 10.0 902.0 TGCAGTGCCTCTCGTGACTCCTACGAGCAGTACTTC CSASRDSYEQYF TRBV20-1*01 TRBJ2-7*01 11.0 1136.0 CALTTYGQNFVF_CSASRDSYEQYF 15 6267 EBV-LMP1-1 EBV 0.63 237 NEG 193 6074 6 EBV LMP1 YLLEMLWRL central memory T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*02:01 B2M MHCI -6688 chip0423_750024 11.09 12.35 Chip2 T1D_4 T1D TGCATCGTCAGAGAGGGAGGAGGTGCTGACGGACTCACCTTT CIVREGGGADGLTF TRAV26-1*01 TRAJ45*01 31.0 2029.0 TGTGCCAGCAGCTTAGCGGTCGGAGAAGGGCCCCAGCATTTT CASSLAVGEGPQHF TRBV7-9*01 TRBJ1-5*01 33.0 1264.0 CIVREGGGADGLTF_CASSLAVGEGPQHF 68 4338 BZLF1-190-197 EBV 0.85 2156 BZLF1-190-197 183 4155 11 EBV BZLF1 RAKFKQLL effector T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-B*08:01 B2M MHCI -6689 chip0423_541305 10.57 7.11 Chip2 T1D_4 T1D TGTGCCAGCAGCCAAGTCACCAACCCGGGGGATGGCTACACCTTC CASSQVTNPGDGYTF TRBV14*01 TRBJ1-2*01 5.0 132.0 _CASSQVTNPGDGYTF 1 4629 EBNA3A-158-166 EBV 0.8 444 NEG 224 4405 10 EBV EBNA3A QAKWRLQTL effector memory T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-B*08:01 B2M MHCI -6690 chip0423_64499 10.4 7.62 Chip2 T1D_4 T1D TGTGCCAGCAGCCAGGAGGACTCCCGTTGGGAGCAGTTCTTC CASSQEDSRWEQFF TRBV14*01 TRBJ2-1*01 18.0 841.0 _CASSQEDSRWEQFF 3 5440 EBV-LMP1-1 EBV 0.64 237 NEG 219 5221 10 EBV LMP1 YLLEMLWRL effector memory T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*02:01 B2M MHCI -6691 chip0423_60696 12.71 7.08 Chip2 T1D_4 T1D TGTGCCAGCAGCCAAGTCAACAACCCGGGGGATGGCTACACCTTC CASSQVNNPGDGYTF TRBV14*01 TRBJ1-2*01 7.0 191.0 _CASSQVNNPGDGYTF 94 4685 EBNA3A-158-166 EBV 0.72 444 NEG 203 4482 10 EBV EBNA3A QAKWRLQTL effector memory T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-B*08:01 B2M MHCI -6692 chip0423_840453 11.34 7.04 Chip2 T1D_5 T1D TGTGCAGCCTCAGAAACCTCCTACGACAAGGTGATATTT CAASETSYDKVIF TRAV13-1*01 TRAJ50*01 20.0 1472.0 CAASETSYDKVIF_ 51 5846 BZLF1-190-197 EBV 0.47 2156 NEG 185 5661 10 EBV BZLF1 RAKFKQLL effector memory T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-B*08:01 B2M MHCI -6693 chip0423_38354 6.34 11.57 Chip2 T1D_6 T1D TGTGCTGTGAGGGACATCCATACTGGAGGCTTCAAAACTACCTTT CAVRDIHTGGFKTTF TRAV3*01 TRAJ9*01 32.0 1232.0 TGTGCCAGCAGCGCCAGGGATGACTACGACGAGCAGTACTTC CASSARDDYDEQYF TRBV9*01 TRBJ2-7*01 26.0 1631.0 CAVRDIHTGGFKTTF_CASSARDDYDEQYF 1 7996 M1 FLU 0.71 1250 M1 196 7800 7 InfluenzaA M1 GILGFVFTL transitional T cells between effector and memory populations PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*02:01 B2M MHCI -6694 chip0423_679417 14.45 10.66 Chip2 T1D_5 T1D TGTGCAGCAACGGAAACCTCCTACGACAAGGTGATATTT CAATETSYDKVIF TRAV13-1*01 TRAJ50*01 13.0 1373.0 TGTGCCAGCAGTCCCCCGGGGAGAAATGAAAAACTGTTTTTT CASSPPGRNEKLFF TRBV12-3*01,TRBV12-4*01 TRBJ1-4*01 11.0 283.0 CAATETSYDKVIF_CASSPPGRNEKLFF 34 3497 BZLF1-190-197 EBV 0.64 2156 NEG 178 3319 12 EBV BZLF1 RAKFKQLL effector T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-B*08:01 B2M MHCI -6695 chip0423_361121 9.09 8.27 Chip2 T1D_4 T1D TGTGCCAGCAGCTTAACGGTTCTGGCAGGTCCAAACACTGAAGCTTTCTTT CASSLTVLAGPNTEAFF TRBV7-3*01 TRBJ1-1*01 19.0 789.0 _CASSLTVLAGPNTEAFF 32 6201 BZLF1-190-197 EBV 0.83 2156 BZLF1-190-197 200 6001 8 EBV BZLF1 RAKFKQLL effector memory T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-B*08:01 B2M MHCI -6696 chip0423_858293 5.95 13.57 Chip2 T1D_6 T1D TGTGCTGGGCCTCCTGGCTCCCCGGGCCATCTAATCTTT CAGPPGSPGHLIF TRAV27*01 TRAJ37*01 33.0 1311.0 TGTGCCAGTAGTGACCGGGGGGGCTACGAGCAGTACTTC CASSDRGGYEQYF TRBV19*01 TRBJ2-7*01 21.0 1907.0 CAGPPGSPGHLIF_CASSDRGGYEQYF 1 6543 M1 FLU 0.47 1250 NEG 203 6340 7 InfluenzaA M1 GILGFVFTL transitional T cells between effector and memory populations PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*02:01 B2M MHCI -6697 chip0423_507107 6.62 11.45 Chip2 T1D_6 T1D TGCATCATCCAACTTGCGAGTGGTACTAGCTATGGAAAGCTGAACTTT CIIQLASGTSYGKLNF TRAV26-2*01 TRAJ52*01 20.0 1829.0 TGTGCCAGCAGCTTGGGACAGGCCTACGAGCAGTACTTC CASSLGQAYEQYF TRBV7-8*01 TRBJ2-7*01 6.0 195.0 CIIQLASGTSYGKLNF_CASSLGQAYEQYF 1 4907 EBNA3A-193-201 EBV 0.9 1022 NEG 203 4704 7 EBV EBNA3A FLRGRAYGL transitional T cells between effector and memory populations PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-B*08:01 B2M MHCI -6698 chip0423_210994 9.29 8.51 Chip2 T1D_5 T1D TGTGCAGGGCAAAGGGAAACCTCCTACGACAAGGTGATATTT CAGQRETSYDKVIF TRAV25*01 TRAJ50*01 28.0 2114.0 TGTGCCAGCTCCCAGTTGGGGGGGGTTTACAATGAGCAGTTCTTC CASSQLGGVYNEQFF TRBV7-9*01 TRBJ2-1*01 77.0 4050.0 CAGQRETSYDKVIF_CASSQLGGVYNEQFF 9 5252 BZLF1-190-197 EBV 0.42 2156 BZLF1-190-197 215 5037 8 EBV BZLF1 RAKFKQLL effector memory T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-B*08:01 B2M MHCI -6699 chip0423_512167 12.92 6.9 Chip2 T1D_4 T1D TGTGCCAGCAGCTTAGCGGTCGGAGAAGGGCCCCAGCATTTT CASSLAVGEGPQHF TRBV7-9*01 TRBJ1-5*01 39.0 1528.0 _CASSLAVGEGPQHF 113 4815 BZLF1-190-197 EBV 0.94 2156 BZLF1-190-197 218 4597 10 EBV BZLF1 RAKFKQLL effector memory T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-B*08:01 B2M MHCI -6700 chip0423_454916 11.23 12.33 Chip2 T1D_4 T1D TGTGCCAGCAGCTTAACGGTTCTGGCAGGTCCAAACACTGAAGCTTTCTTT CASSLTVLAGPNTEAFF TRBV7-3*01 TRBJ1-1*01 28.0 809.0 _CASSLTVLAGPNTEAFF 32 3553 BZLF1-190-197 EBV 0.77 2156 BZLF1-190-197 228 3325 11 EBV BZLF1 RAKFKQLL effector T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-B*08:01 B2M MHCI -6701 chip0423_443525 -2.11 7.57 Chip2 healthy_3 healthy TGTGCTGGTGCTCAACTCAGGGCGGCTCTGTAGGGCTGGTCTTT CAGAQLRg?cGSVGLVF TRAV35*01 TRAJ57*01 29.0 1988.0 CAGAQLRg?cGSVGLVF_ 1 8824 MART1-ALA MART1 0.46 269 MART1-ALA 171 8653 3 HomoSapiens MART1 ALAGIGILTV Naive T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*02:01 B2M MHCI -6702 chip0423_128422 -0.09 7.97 Chip2 T1D_5 T1D TGTGCCAGCAGCTTAGAAGTTAACAGGCAAGAGACCCAGTACTTC CASSLEVNRQETQYF TRBV7-9*01 TRBJ2-5*01 41.0 1651.0 _CASSLEVNRQETQYF 1 7696 G6PC2-FLH-8 IGRP 0.59 3 G6PC2-FLH-8 191 7505 4 HomoSapiens G6PC2 FLHRNGVL Naive T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-B*08:01 B2M MHCI -6703 chip0423_466210 -0.57 4.75 Chip2 T1D_6 T1D TGTGCCGTTAGCGAATCTAACTTTGGAAATGAGAAATTAACCTTT CAVSESNFGNEKLTF TRAV12-2*01 TRAJ48*01 1.0 56.0 TGTGCCAGCAGCTTAGCTAGCTTGGTGGAGACCCAGTACTTC CASSLASLVETQYF TRBV7-2*01 TRBJ2-5*01 77.0 2673.0 CAVSESNFGNEKLTF_CASSLASLVETQYF 1 8664 PGT-178 PGT 0.7 1480 NEG 169 8495 5 HomoSapiens PGT LLAGIGTVPI natural killer-like T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*02:01 B2M MHCI -6704 chip0423_316390 11.46 8.41 Chip2 T1D_6 T1D TGTGCCAGCAGCTTGGGACAGGCCTACGAGCAGTACTTC CASSLGQAYEQYF TRBV7-8*01 TRBJ2-7*01 28.0 2039.0 _CASSLGQAYEQYF 175 4434 EBNA3A-193-201 EBV 0.63 1022 NEG 197 4237 10 EBV EBNA3A FLRGRAYGL effector memory T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-B*08:01 B2M MHCI -6705 chip0423_735415 13.69 7.53 Chip2 T1D_4 T1D TGTGCCAGCAGCTTAGCGGTCGGAGAAGGGCCCCAGCATTTT CASSLAVGEGPQHF TRBV7-9*01 TRBJ1-5*01 97.0 4661.0 _CASSLAVGEGPQHF 113 4362 BZLF1-190-197 EBV 0.82 2156 BZLF1-190-197 233 4129 10 EBV BZLF1 RAKFKQLL effector memory T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-B*08:01 B2M MHCI -6706 chip0423_285074 -0.97 10.4 Chip2 T1D_6 T1D TGTGCCGGCGCTCCGGGCAGAGCTGCCACGATCATCTTT CAGAPGRAATIIF TRAV27*01 TRAJ30*01 38.0 1992.0 TGTGCCAGCAGTGAAGAACGGGGCAGATCCTACGAGCAGTACTTC CASSEERGRSYEQYF TRBV6-1*01 TRBJ2-7*01 3.0 42.0 CAGAPGRAATIIF_CASSEERGRSYEQYF 1 5959 Gag260-267 HIV 0.71 10 Gag260-267 190 5769 3 HIV-1 Gag EIYKRWII Naive T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-B*08:01 B2M MHCI -6707 chip0423_135702 10.41 9.54 Chip2 T1D_4 T1D TGTGCCAGCAGCCAAGTCAACAACCCGGGGGATGGCTACACCTTC CASSQVNNPGDGYTF TRBV14*01 TRBJ1-2*01 12.0 550.0 _CASSQVNNPGDGYTF 94 5334 EBNA3A-158-166 EBV 0.75 444 EBNA3A-158-166 205 5129 9 EBV EBNA3A QAKWRLQTL effector memory T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-B*08:01 B2M MHCI -6708 chip0423_593431 5.39 9.93 Chip2 T1D_4 T1D _ 6746 5453 EBV-LMP1-1 EBV 0.73 237 EBV-LMP1-1 201 5252 6 EBV LMP1 YLLEMLWRL central memory T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*02:01 B2M MHCI -6709 chip0423_236805 11.19 7.15 Chip2 T1D_5 T1D TGTGCCATCAGTGAGACCCGACAGTATTCCTACGAGCAGTACTTC CAISETRQYSYEQYF TRBV10-3*01 TRBJ2-7*01 21.0 900.0 _CAISETRQYSYEQYF 2 5098 BZLF1-190-197 EBV 0.48 2156 NEG 208 4890 10 EBV BZLF1 RAKFKQLL effector memory T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-B*08:01 B2M MHCI -6710 chip0423_629004 11.44 10.99 Chip2 T1D_5 T1D TGTCCCTGAGGGGGGGCTTT CP*g?gGGF TRAV23/DV6*01 TRAJ11*01 9.0 1733.0 TGTGCCAGCCAACTAGCGGGAGGCACCGGGGAGCTGTTTTTT CASQLAGGTGELFF TRBV24-1*01 TRBJ2-2*01 15.0 855.0 CP*g?gGGF_CASQLAGGTGELFF 2 3848 BZLF1-190-197 EBV 0.67 2156 NEG 200 3648 9 EBV BZLF1 RAKFKQLL effector memory T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-B*08:01 B2M MHCI -6711 chip0423_611229 12.47 10.55 Chip2 T1D_4 T1D TGTGCCAGCAGCTTAGCGGTCGGAGAAGGGCCCCAGCATTTT CASSLAVGEGPQHF TRBV7-9*01 TRBJ1-5*01 59.0 2198.0 _CASSLAVGEGPQHF 113 2926 BZLF1-190-197 EBV 0.84 2156 BZLF1-190-197 192 2734 9 EBV BZLF1 RAKFKQLL effector memory T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-B*08:01 B2M MHCI -6712 chip0423_788566 6.47 12.34 Chip2 T1D_6 T1D TGTGCTGTCTCTGGCAACACAGGCAAACTAATCTTT CAVSGNTGKLIF TRAV20*01 TRAJ37*01 2.0 22.0 TGCGCCAGCAGCCAATGGGACAATCAGCCCCAGCATTTT CASSQWDNQPQHF TRBV4-1*01 TRBJ1-5*01 34.0 1114.0 CAVSGNTGKLIF_CASSQWDNQPQHF 4 7160 INS-WMR-8 INS 0.62 17 INS-WMR-8 192 6968 7 HomoSapiens INS WMRLLPLL transitional T cells between effector and memory populations PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-B*08:01 B2M MHCI -6713 chip0423_803762 12.95 7.33 Chip2 T1D_6 T1D CGCATCCTCCCGCTTGCTGGTGGTGCTAGCTATGGAAAGCTGACATTT RILPLAGGASYGKLTF TRAV26-2*01 TRAJ52*01 25.0 870.0 TGTGCCAGCAGCTTGGGACAGGCCTACGAGCAGTACTTC CASSLGQAYEQYF TRBV7-8*01 TRBJ2-7*01 3.0 89.0 RILPLAGGASYGKLTF_CASSLGQAYEQYF 1 5365 EBNA3A-193-201 EBV 0.56 1022 NEG 226 5139 10 EBV EBNA3A FLRGRAYGL effector memory T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-B*08:01 B2M MHCI -6714 chip0423_412673 11.37 7.35 Chip2 T1D_6 T1D TGCATCCTCCCACTTGCTGATGGTACTAGCTATGGAAAGCTGACATTT CILPLADGTSYGKLTF TRAV26-2*01 TRAJ52*01 52.0 2000.0 CILPLADGTSYGKLTF_ 1 6490 EBNA3A-193-201 EBV 0.85 1022 EBNA3A-193-201 235 6255 10 EBV EBNA3A FLRGRAYGL effector memory T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-B*08:01 B2M MHCI -6715 chip0423_839194 13.51 8.4 Chip2 T1D_4 T1D TGCATCGTCAGAGAGGGAGGAGCTGCTGCCGGACTCACCCTT CIVREGGAAAGLTL TRAV26-1*01 TRAJ45*01 13.0 1134.0 TGTGCCAGCAGCTTAGCGGTCGGAGAAGGGCCCCAGCATTTT CASSLAVGEGPQHF TRBV7-9*01 TRBJ1-5*01 36.0 1386.0 CIVREGGAAAGLTL_CASSLAVGEGPQHF 1 4829 BZLF1-190-197 EBV 0.98 2156 BZLF1-190-197 228 4601 10 EBV BZLF1 RAKFKQLL effector memory T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-B*08:01 B2M MHCI -6716 chip0423_333518 6.08 9.56 Chip2 T1D_4 T1D TGTGCCAGCAGTTACTCAAGTACAGGGGAGTACTTC CASSYSSTGEYF TRBV6-2*01,TRBV6-3*01 TRBJ2-7*01 18.0 813.0 _CASSYSSTGEYF 32 9019 EBV-LMP1-1 EBV 0.67 237 NEG 215 8804 6 EBV LMP1 YLLEMLWRL central memory T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*02:01 B2M MHCI -6717 chip0423_220278 8.99 8.36 Chip2 T1D_4 T1D TGCATCGTCAGAGAGGGAGGAGGTGCTGACGGACTCCCCTTT CIVREGGGADGLPF TRAV26-1*01 TRAJ45*01 31.0 1712.0 TGTGCCAGCAGCTTAGCGGTCGGAGAAGAGCCCCAGCATTTT CASSLAVGEEPQHF TRBV7-9*01 TRBJ1-5*01 13.0 447.0 CIVREGGGADGLPF_CASSLAVGEEPQHF 1 5600 BZLF1-190-197 EBV 0.95 2156 BZLF1-190-197 189 5411 8 EBV BZLF1 RAKFKQLL effector memory T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-B*08:01 B2M MHCI -6718 chip0423_515779 9.55 8.59 Chip2 T1D_4 T1D TGCATCGTCAGAGAGGGAGGAGGTGCTGACGGACTCACCTTT CIVREGGGADGLTF TRAV26-1*01 TRAJ45*01 27.0 1989.0 TGTGCCAGCAGCTTAGCGGTCGGAGAAGGGCCCCAGCATTTT CASSLAVGEGPQHF TRBV7-9*01 TRBJ1-5*01 64.0 2535.0 CIVREGGGADGLTF_CASSLAVGEGPQHF 68 5520 BZLF1-190-197 EBV 0.86 2156 BZLF1-190-197 209 5311 8 EBV BZLF1 RAKFKQLL effector memory T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-B*08:01 B2M MHCI -6719 chip0423_331189 12.95 10.92 Chip2 T1D_5 T1D TGTGCAGCGGCGGAAACCTCCTACGACAAGGTGATATTT CAAAETSYDKVIF TRAV13-1*01 TRAJ50*01 24.0 2138.0 TGTGCCAGCCAACTAGCGGGAGGCACCGGGGAGCTGTTTTTT CASQLAGGTGELFF TRBV24-1*01 TRBJ2-2*01 12.0 766.0 CAAAETSYDKVIF_CASQLAGGTGELFF 131 4023 BZLF1-190-197 EBV 0.73 2156 NEG 204 3819 9 EBV BZLF1 RAKFKQLL effector memory T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-B*08:01 B2M MHCI -6720 chip0423_518883 10.75 9.83 Chip2 T1D_4 T1D TGTGCCAGCAGCCAAGTCAACAACCCGGGGGATGGCTACACCTTC CASSQVNNPGDGYTF TRBV14*01 TRBJ1-2*01 20.0 757.0 _CASSQVNNPGDGYTF 94 6171 EBNA3A-158-166 EBV 0.67 444 NEG 206 5965 9 EBV EBNA3A QAKWRLQTL effector memory T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-B*08:01 B2M MHCI -6721 chip0423_514139 -3.33 9.39 Chip2 T1D_6 T1D TGCAGTGGCAACTGGGGAGGAATCGAACTAGCCAAAAACATTCAGTACTTC CSGNWGGIELAKNIQYF TRBV20-1*01 TRBJ2-4*01 14.0 530.0 _CSGNWGGIELAKNIQYF 1 5857 MART1-A27L MART1 0.5 16 NEG 192 5665 2 HomoSapiens MART1 ELAGIGILTV Naive T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*02:01 B2M MHCI -6722 chip0423_314871 13.66 7.63 Chip2 T1D_6 T1D TGTGCCAGCAGCTTGGGACAGGCCTACGAGCAGTACTTC CASSLGQAYEQYF TRBV7-8*01 TRBJ2-7*01 14.0 919.0 _CASSLGQAYEQYF 175 3771 EBNA3A-193-201 EBV 1.0 1022 NEG 226 3545 10 EBV EBNA3A FLRGRAYGL effector memory T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-B*08:01 B2M MHCI -6723 chip0423_216455 9.48 7.78 Chip2 T1D_6 T1D TGTGCAGCAAGCAGGCTCGCGGCGGGGGTGCTGCCGGCCTCACCTTT CAASRLAgc?GGAAGLTF TRAV23/DV6*01 TRAJ45*01 47.0 1966.0 CAASRLAgc?GGAAGLTF_ 1 8663 EBNA3A-193-201 EBV 0.64 1022 NEG 194 8469 8 EBV EBNA3A FLRGRAYGL effector memory T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-B*08:01 B2M MHCI -6724 chip0423_352020 10.07 10.37 Chip2 T1D_4 T1D TGTGCTACGGACGCGGGTGACAGAGATGACAAGATCATCTTT CATDAGDRDDKIIF TRAV17*01 TRAJ30*01 1.0 45.0 TGTGCCAGCAGTTTATACCCGACAGAGTGGTACTTC CASSLYPTEWYF TRBV27*01 TRBJ2-7*01 31.0 1930.0 CATDAGDRDDKIIF_CASSLYPTEWYF 1 7074 EBV-BLMF1 EBV 0.46 2531 NEG 209 6865 9 EBV BLMF1 GLCTLVAML effector memory T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*02:01 B2M MHCI -6725 chip0423_851088 7.29 11.57 Chip2 T1D_4 T1D TGTGCAGCAAGCGACCGCCTTCCAGGAGGAAGCTACATACCTACATTT CAASDRLPGGSYIPTF TRAV13-1*01 TRAJ6*01 6.0 152.0 TGCAGTGCTACTAACCAGTACGACGGACCCGACACTGAAGCTTTCTTT CSATNQYDGPDTEAFF TRBV20-1*01 TRBJ1-1*01 24.0 740.0 CAASDRLPGGSYIPTF_CSATNQYDGPDTEAFF 21 5738 BZLF1-190-197 EBV 0.8 2156 NEG 190 5548 7 EBV BZLF1 RAKFKQLL transitional T cells between effector and memory populations PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-B*08:01 B2M MHCI -6726 chip0423_114878 11.57 9.61 Chip2 T1D_4 T1D TGTGCTGTGAGAGACACGACGTGGGATGACAAGATCATCTTT CAVRDTTWDDKIIF TRAV3*01 TRAJ30*01 17.0 477.0 TGTGCCAGCAGCTTAGGAGGGGGAGAGGGGGCCAGTGAGCAGTTCTTC CASSLGGGEGASEQFF TRBV7-6*01 TRBJ2-1*01 18.0 1009.0 CAVRDTTWDDKIIF_CASSLGGGEGASEQFF 12 3882 EBNA3A-193-201 EBV 0.4 1022 NEG 181 3701 9 EBV EBNA3A FLRGRAYGL effector memory T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-B*08:01 B2M MHCI -6727 chip0423_388994 11.07 7.6 Chip2 T1D_4 T1D TGTGCCAGCAGCCAAGTCAACAACCCGGGGGATGGCTACACCTTC CASSQVNNPGDGYTF TRBV14*01 TRBJ1-2*01 26.0 694.0 _CASSQVNNPGDGYTF 94 4888 EBNA3A-158-166 EBV 0.64 444 EBNA3A-158-166 210 4678 10 EBV EBNA3A QAKWRLQTL effector memory T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-B*08:01 B2M MHCI -6728 chip0423_872844 8.97 8.74 Chip2 T1D_6 T1D TGTGCTACGGAGGGGCCTTCAGGATACAGCACCCTCACCTTT CATEGPSGYSTLTF TRAV17*01 TRAJ11*01 82.0 3231.0 CGTGCCAGCCGCCGCTTGGGCGGGCATGGCTACACCTTC RASRRLGGHGYTF TRBV6-1*01 TRBJ1-2*01 5.0 175.0 CATEGPSGYSTLTF_RASRRLGGHGYTF 1 9265 EBV-LMP2-FLY EBV 0.67 355 NEG 199 9066 8 EBV LMP2 FLYALALLL effector memory T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*02:01 B2M MHCI -6729 chip0423_501775 -3.03 10.29 Chip2 T1D_4 T1D TGCGCCAGCAGCCAAGATTCAGCGGAAGCGAACACCGGGGAGCTGTTTTTT CASSQDSAEANTGELFF TRBV4-3*01 TRBJ2-2*01 116.0 3424.0 _CASSQDSAEANTGELFF 1 5619 HCVNS3-1073-1081 HCV 0.65 36 NEG 183 5436 3 HCV NS3 CINGVCWTV Naive T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*02:01 B2M MHCI -6730 chip0423_879120 9.87 8.51 Chip2 T1D_4 T1D TGTGCTGGCTCCCCGCCACCATCCTCTGGGGCTGGGCCTTTCCAACTCACTTTC CAGSPPPSSGAGPFQLTF TRAV35*01 TRAJ28*01 15.0 118.0 TGTGCCAGCAGTCTACACAGGACACTACTCTCTGGAAACACCATATATTTT CASSLHRTLLSGNTIYF TRBV28*01 TRBJ1-3*01 71.0 2482.0 CAGSPPPSSGAGPFQLTF_CASSLHRTLLSGNTIYF 1 6239 EBNA3A-158-166 EBV 0.5 444 NEG 207 6032 8 EBV EBNA3A QAKWRLQTL effector memory T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-B*08:01 B2M MHCI -6731 chip0423_874965 5.35 9.57 Chip2 T1D_4 T1D TGTGCCAGCAGTTACTCAAGTACAGGGGAGTACTTC CASSYSSTGEYF TRBV6-2*01,TRBV6-3*01 TRBJ2-7*01 17.0 967.0 _CASSYSSTGEYF 32 7041 EBV-LMP1-1 EBV 0.55 237 NEG 145 6896 6 EBV LMP1 YLLEMLWRL central memory T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*02:01 B2M MHCI -6732 chip0423_699242 12.11 10.33 Chip2 T1D_4 T1D CGTGCTGTGAGTGATGGAGAAGGAGCCCCGAAGCTGGTATTT RAVSDGEGAPKLVF TRAV8-6*01 TRAJ54*01 12.0 459.0 TGTGCCAGCAGCTTAACGGTTCTGGCAGGTCCAAACACTGAAGCTTTCTTT CASSLTVLAGPNTEAFF TRBV7-3*01 TRBJ1-1*01 39.0 1249.0 RAVSDGEGAPKLVF_CASSLTVLAGPNTEAFF 1 4356 BZLF1-190-197 EBV 0.77 2156 BZLF1-190-197 216 4140 9 EBV BZLF1 RAKFKQLL effector memory T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-B*08:01 B2M MHCI -6733 chip0423_478719 13.66 7.14 Chip2 T1D_5 T1D TGTGCCAGCTCCCAGTTGGGGGGGGTTTACAATGAGCAGTTCTTC CASSQLGGVYNEQFF TRBV7-9*01 TRBJ2-1*01 11.0 849.0 _CASSQLGGVYNEQFF 13 3881 BZLF1-190-197 EBV 0.54 2156 BZLF1-190-197 208 3673 10 EBV BZLF1 RAKFKQLL effector memory T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-B*08:01 B2M MHCI -6734 chip0423_327366 10.02 9.7 Chip2 T1D_5 T1D TGAGCCGTTACCGGGATAACTATCGTTCGAATTTTCTCTTT *AVTGIac?YRSNFLF TRAV12-1*01 TRAJ26*01 14.0 1878.0 TGTGCCAGCAGCTTAGGACGTGAAATCGGGCCCATCGAGCAGTTCTTC CASSLGREIGPIEQFF TRBV7-8*01 TRBJ2-1*01 62.0 2157.0 *AVTGIac?YRSNFLF_CASSLGREIGPIEQFF 1 4595 BZLF1-190-197 EBV 0.92 2156 NEG 176 4419 8 EBV BZLF1 RAKFKQLL effector memory T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-B*08:01 B2M MHCI -6735 chip0423_255749 10.96 6.94 Chip2 T1D_4 T1D TGCGTCCTGCCTCTTGCTGGTGGTACTAGCTATGGAACGCTGACCTTT CVLPLAGGTSYGTLTF TRAV26-2*01 TRAJ52*01 51.0 1235.0 TGTGCCAGCAGCTTAGGGCAAGCCTACGAGCAGTACTTC CASSLGQAYEQYF TRBV7-8*01 TRBJ2-7*01 46.0 1679.0 CVLPLAGGTSYGTLTF_CASSLGQAYEQYF 1 6791 EBNA3A-193-201 EBV 0.46 1022 NEG 224 6567 10 EBV EBNA3A FLRGRAYGL effector memory T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-B*08:01 B2M MHCI -6736 chip0423_77095 14.95 11.81 Chip2 healthy_4 healthy TGTGCCGTGAAGGACACCGACAAGCTCATCTTT CAVKDTDKLIF TRAV8-1*01 TRAJ34*01 20.0 2038.0 CAVKDTDKLIF_ 56 2337 EBV-BRLF1 EBV 1.0 1264 NEG 168 2169 12 EBV BRLF1 YVLDHLIVV effector T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*02:01 B2M MHCI -6737 chip0423_595274 11.99 7.26 Chip2 T1D_6 T1D TGTGCCAGCACTTCGACAGAAACCGTCGATGGCTACACCTTC CASTSTETVDGYTF TRBV5-4*01 TRBJ1-2*01 22.0 578.0 _CASTSTETVDGYTF 4 5920 EBNA3A-158-166 EBV 0.84 444 EBNA3A-158-166 200 5720 10 EBV EBNA3A QAKWRLQTL effector memory T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-B*08:01 B2M MHCI -6738 chip0423_685619 11.67 10.21 Chip2 T1D_4 T1D _ 6746 3707 BZLF1-190-197 EBV 1.0 2156 BZLF1-190-197 200 3507 9 EBV BZLF1 RAKFKQLL effector memory T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-B*08:01 B2M MHCI -6739 chip0423_72828 -0.64 9.39 Chip2 T1D_5 T1D TGTGCTGTGCCCGATGCTGGTGGTACTAGCTATGGAAAGCTGACATTT CAVPDAGGTSYGKLTF TRAV21*01 TRAJ52*01 39.0 754.0 TGCGCCAGCAGCCACGGGGGCCCCTTAGTGGAGACCCAGTACTTC CASSHGGPLVETQYF TRBV4-3*01 TRBJ2-5*01 47.0 2192.0 CAVPDAGGTSYGKLTF_CASSHGGPLVETQYF 1 9175 ZNT8-VTD-9 ZNT8 0.63 65 ZNT8-VTD-9 170 9005 3 HomoSapiens ZNT8 VTDAAHLLI Naive T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*01:01 B2M MHCI -6740 chip0423_108138 -1.41 7.48 Chip2 T1D_4 T1D TGTGCCAGTAGTATTGGGCACTCGAGCTCCTACGAGCAGTACTTC CASSIGHSSSYEQYF TRBV19*01 TRBJ2-7*01 20.0 1212.0 _CASSIGHSSSYEQYF 1 7886 IAPP-STN-9 IAPP 0.61 48 IAPP-STN-9 178 7708 3 HomoSapiens IAPP STNVGSNTY Naive T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*01:01 B2M MHCI -6741 chip0423_802842 15.88 9.76 Chip2 T1D_4 T1D TGCATCGTCAGAGAGGGAGGAGGTGCTGACGGACTCCCCTTT CIVREGGGADGLPF TRAV26-1*01 TRAJ45*01 44.0 2012.0 TGTGCCAGCAGCTTAGCGGTCGGAGAAGGGCCCCAGCATTTT CASSLAVGEGPQHF TRBV7-9*01 TRBJ1-5*01 23.0 910.0 CIVREGGGADGLPF_CASSLAVGEGPQHF 21 3792 BZLF1-190-197 EBV 0.83 2156 NEG 217 3575 12 EBV BZLF1 RAKFKQLL effector T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-B*08:01 B2M MHCI -6742 chip0423_788085 13.0 6.68 Chip2 T1D_5 T1D TGTGCAGCAAGCGAGACCTCCTACGACAAGGTGATATTT CAASETSYDKVIF TRAV13-1*01 TRAJ50*01 14.0 889.0 TGTGCCAGCAGCTTACTGGGGACAGACACTAATGAGCAGTTCTTC CASSLLGTDTNEQFF TRBV7-9*01 TRBJ2-1*01 85.0 3513.0 CAASETSYDKVIF_CASSLLGTDTNEQFF 1 3064 BZLF1-190-197 EBV 0.58 2156 NEG 202 2862 10 EBV BZLF1 RAKFKQLL effector memory T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-B*08:01 B2M MHCI -6743 chip0423_204347 -0.62 6.63 Chip2 healthy_3 healthy TGTGCCAGTAGTATACTAGCGAGCTCCTACAATGAGCAGTTCTTC CASSILASSYNEQFF TRBV19*01 TRBJ2-1*01 20.0 769.0 _CASSILASSYNEQFF 1 8574 ZNT8-115-123 ZNT8 0.83 74 ZNT8-115-123 179 8395 3 HomoSapiens ZNT8 LLSLFSLWL Naive T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*02:01 B2M MHCI -6744 chip0423_445285 15.93 10.83 Chip2 T1D_5 T1D TGTGCAGCAACGGAAACCTCCTACGACAAGGTGATATTT CAATETSYDKVIF TRAV13-1*01 TRAJ50*01 19.0 1331.0 TGTGCCAGCAGTCCCCCGGGGAGAAATGAAAAACTGTTTTTT CASSPPGRNEKLFF TRBV12-3*01,TRBV12-4*01 TRBJ1-4*01 111.0 3888.0 CAATETSYDKVIF_CASSPPGRNEKLFF 34 2300 BZLF1-190-197 EBV 0.71 2156 NEG 201 2099 12 EBV BZLF1 RAKFKQLL effector T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-B*08:01 B2M MHCI -6745 chip0423_388603 5.5 8.63 Chip2 T1D_4 T1D TGTGCTCTCACTACCTATGGTCAGAATTTTGTCTTT CALTTYGQNFVF TRAV38-1*01 TRAJ26*01 18.0 1445.0 TGCAGTGCCTCTCGTGACTCCTACGAGCAGTACTTC CSASRDSYEQYF TRBV20-1*01 TRBJ2-7*01 3.0 86.0 CALTTYGQNFVF_CSASRDSYEQYF 15 4643 EBV-LMP1-1 EBV 0.83 237 EBV-LMP1-1 224 4419 6 EBV LMP1 YLLEMLWRL central memory T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*02:01 B2M MHCI -6746 chip0423_790301 12.55 10.31 Chip2 T1D_4 T1D TGTGCAGCTCAGAAAACCTCCTACGACAAGGTGATATTT CAAQKTSYDKVIF TRAV13-1*01 TRAJ50*01 20.0 1885.0 TGTGCCAGCAGCTTAACAGGGGCGGGTAATCAGCCCCAGCATTTT CASSLTGAGNQPQHF TRBV7-9*01 TRBJ1-5*01 50.0 1200.0 CAAQKTSYDKVIF_CASSLTGAGNQPQHF 1 4337 BZLF1-190-197 EBV 0.61 2156 NEG 188 4149 9 EBV BZLF1 RAKFKQLL effector memory T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-B*08:01 B2M MHCI -6747 chip0423_331681 -0.41 9.54 Chip2 T1D_4 T1D TGTGCCGATCATAGCAGCTATAAATTGATCTTC CADHSSYKLIF TRAV23/DV6*01 TRAJ12*01 17.0 2133.0 TGTGCCAGCAGCCAATACAATGAGCAGTTCTTC CASSQYNEQFF TRBV3-1*01 TRBJ2-1*01 60.0 4682.0 CADHSSYKLIF_CASSQYNEQFF 1 5870 PGT-178 PGT 0.4 1480 PGT-178 208 5662 3 HomoSapiens PGT LLAGIGTVPI Naive T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*02:01 B2M MHCI -6748 chip0423_430744 15.05 10.74 Chip2 T1D_5 T1D TGTGCAGCAACGGAAACCTCCTACGACAAAGTGATATTT CAATETSYDKVIF TRAV13-1*01 TRAJ50*01 35.0 1943.0 TGTGCCAGCAGTCCCCCGGGGAGAAATGAAAAACTGTTTTTT CASSPPGRNEKLFF TRBV12-3*01,TRBV12-4*01 TRBJ1-4*01 73.0 3084.0 CAATETSYDKVIF_CASSPPGRNEKLFF 34 2703 BZLF1-190-197 EBV 0.63 2156 NEG 206 2497 12 EBV BZLF1 RAKFKQLL effector T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-B*08:01 B2M MHCI -6749 chip0423_93428 -3.23 9.28 Chip2 T1D_5 T1D TGTGCCAGCAGCGTTACAGGCACTGAAGCTTTCTTT CASSVTGTEAFF TRBV9*01 TRBJ1-1*01 28.0 1486.0 _CASSVTGTEAFF 1 6207 GFAP-HLK-8 GFAP 0.65 28 GFAP-HLK-8 177 6030 2 HomoSapiens GFAP HLKRNIVV Naive T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-B*08:01 B2M MHCI -6750 chip0423_681657 4.83 11.59 Chip2 healthy_4 healthy _ 6746 3078 M1 FLU 0.78 1250 NEG 176 2902 6 InfluenzaA M1 GILGFVFTL central memory T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*02:01 B2M MHCI -6751 chip0423_790503 -3.23 9.91 Chip2 T1D_4 T1D TGTGCAATGACCATATCTAACTTTGGAAATGAGAAATTAACCTTT CAMTISNFGNEKLTF TRAV12-3*01 TRAJ48*01 49.0 1956.0 TGTGCCAGCAGGCTTGGGACAGGGGAGAGCAATCAGCCCCAGCATTTT CASRLGTGESNQPQHF TRBV5-6*01 TRBJ1-5*01 59.0 1931.0 CAMTISNFGNEKLTF_CASRLGTGESNQPQHF 1 5733 PGT-178 PGT 0.65 1480 NEG 173 5560 2 HomoSapiens PGT LLAGIGTVPI Naive T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*02:01 B2M MHCI -6752 chip0423_509751 9.91 6.92 Chip2 T1D_5 T1D TGTGCAGCAAGTGAGACCTCCTACGACAAGGTGATATTT CAASETSYDKVIF TRAV13-1*01 TRAJ50*01 20.0 1828.0 TGTGCCAGCAGCTTATTGGGGAGCTCTGGAAACACCATATATTTT CASSLLGSSGNTIYF TRBV7-9*01 TRBJ1-3*01 38.0 1014.0 CAASETSYDKVIF_CASSLLGSSGNTIYF 2 8226 BZLF1-190-197 EBV 0.53 2156 NEG 195 8031 10 EBV BZLF1 RAKFKQLL effector memory T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-B*08:01 B2M MHCI -6753 chip0423_870630 6.45 13.03 Chip2 T1D_6 T1D TGTGTTGTGAGTGACCGCAACTTCAACAAATTTTACTTT CVVSDRNFNKFYF TRAV8-2*01 TRAJ21*01 13.0 871.0 TGTGCCATCAGTGAGTCTCTAGGAAGGGACGAGCAGTACTTC CAISESLGRDEQYF TRBV10-3*01 TRBJ2-7*01 44.0 1947.0 CVVSDRNFNKFYF_CAISESLGRDEQYF 2 5364 NP44-52 FLU 0.62 474 NP44-52 166 5198 7 InfluenzaA NP CTELKLSDY transitional T cells between effector and memory populations PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*01:01 B2M MHCI -6754 chip0423_620794 9.37 11.37 Chip2 T1D_6 T1D TGTGCCAGCAGCTTGGGACAGGCCTACGAGCAGTACTTC CASSLGQAYEQYF TRBV7-8*01 TRBJ2-7*01 17.0 936.0 _CASSLGQAYEQYF 175 5272 EBNA3A-193-201 EBV 0.85 1022 EBNA3A-193-201 177 5095 9 EBV EBNA3A FLRGRAYGL effector memory T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-B*08:01 B2M MHCI -6755 chip0423_801154 8.81 8.32 Chip2 T1D_6 T1D TGCATCCTCCCACTTGCTGGTGGTACTAGCTATGGAAAGCTGACATTT CILPLAGGTSYGKLTF TRAV26-2*01 TRAJ52*01 45.0 1992.0 TGTGCCAGCAGCTTGGGACAGGCCTACGAGCAGTACTTC CASSLGQAYEQYF TRBV7-8*01 TRBJ2-7*01 57.0 2829.0 CILPLAGGTSYGKLTF_CASSLGQAYEQYF 308 10318 EBNA3A-193-201 EBV 0.88 1022 EBNA3A-193-201 183 10135 8 EBV EBNA3A FLRGRAYGL effector memory T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-B*08:01 B2M MHCI -6756 chip0423_179276 14.81 10.69 Chip2 T1D_5 T1D TGTGCAGCAATGGAAACCTCCTACGACAAGGTGATATTT CAAMETSYDKVIF TRAV13-1*01 TRAJ50*01 30.0 2018.0 TGTGCCAGCAGCGTCCCGGCCACAGGGGGGACCGGGGAGCTGTTTTTT CASSVPATGGTGELFF TRBV9*01 TRBJ2-2*01 3.0 82.0 CAAMETSYDKVIF_CASSVPATGGTGELFF 4 3392 BZLF1-190-197 EBV 0.83 2156 NEG 214 3178 12 EBV BZLF1 RAKFKQLL effector T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-B*08:01 B2M MHCI -6757 chip0423_842138 14.25 8.45 Chip2 T1D_4 T1D TTCATCGTCAGAGAGGGAGGAGGTGCTGACCGACTCACCGTT FIVREGGGADRLTV TRAV26-1*01 TRAJ45*01 24.0 1972.0 TGCAGCGTTGGAGGAGGGGGGACTAATGAAAAACTGTTTTTT CSVGGGGTNEKLFF TRBV29-1*01 TRBJ1-4*01 42.0 1632.0 FIVREGGGADRLTV_CSVGGGGTNEKLFF 1 4018 BZLF1-190-197 EBV 0.85 2156 BZLF1-190-197 191 3827 12 EBV BZLF1 RAKFKQLL effector T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-B*08:01 B2M MHCI -6758 chip0423_724584 -2.05 9.67 Chip2 T1D_5 T1D TGTGCCAGCAGTTACGATCAGGGCGCTGAAGCTTTCTTT CASSYDQGAEAFF TRBV6-5*01 TRBJ1-1*01 33.0 1510.0 _CASSYDQGAEAFF 1 6801 M1-ALA FLU 0.79 10 M1-ALA 172 6629 3 InfluenzaA M1 ALASCMGLIY Naive T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*01:01 B2M MHCI -6759 chip0423_304520 12.79 10.18 Chip2 T1D_4 T1D _ 6746 4766 BZLF1-190-197 EBV 0.84 2156 BZLF1-190-197 198 4568 9 EBV BZLF1 RAKFKQLL effector memory T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-B*08:01 B2M MHCI -6760 chip0423_286175 10.3 7.11 Chip2 T1D_4 T1D TGTGCTGTGAGTGATGGAGAAGGAGCCCAGAAGCTGGTATTT CAVSDGEGAQKLVF TRAV8-6*01 TRAJ54*01 54.0 2113.0 TGTGCCAGCAGCTTAACGGTTCTGGCAGGTCCAAACACTGAAGCTTTCTTT CASSLTVLAGPNTEAFF TRBV7-3*01 TRBJ1-1*01 18.0 556.0 CAVSDGEGAQKLVF_CASSLTVLAGPNTEAFF 44 5232 BZLF1-190-197 EBV 0.94 2156 BZLF1-190-197 175 5057 10 EBV BZLF1 RAKFKQLL effector memory T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-B*08:01 B2M MHCI -6761 chip0423_418352 13.65 11.73 Chip2 T1D_5 T1D TGTGCAGCAAGTGAGACCTCCTACGACAAGGTGATATTT CAASETSYDKVIF TRAV13-1*01 TRAJ50*01 67.0 5559.0 TGTGCTCTAAACCCCGATTATGGAGGAAGCCAAGGAAATCTCATCTTT CALNPDYGGSQGNLIF TRAV16*01 TRAJ42*01 59.0 1953.0 0.39 TGTGCCAGCAGCCATACCCAAGATATCCCCAACTATGGCTACACCTTC CASSHTQDIPNYGYTF TRBV12-3*01,TRBV12-4*01 TRBJ1-2*01 167.0 7021.0 CAASETSYDKVIF_CASSHTQDIPNYGYTF 4 2140 BZLF1-190-197 EBV 0.71 2156 NEG 213 1927 12 EBV BZLF1 RAKFKQLL effector T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-B*08:01 B2M MHCI -6762 chip0423_265553 -1.34 10.18 Chip2 T1D_6 T1D TGTGCCGTGAACGAATGGGCAGGCAACATGCTCACCTTT CAVNEWAGNMLTF TRAV12-2*01 TRAJ39*01 48.0 3449.0 TGTGCCAGCGCGCAGGGGAATCACTATGGCTACACCTTC CASAQGNHYGYTF TRBV6-1*01 TRBJ1-2*01 1.0 37.0 CAVNEWAGNMLTF_CASAQGNHYGYTF 1 5290 MART1-A28L MART1 0.82 84 NEG 180 5110 3 HomoSapiens MART1 ALGIGILTV Naive T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*02:01 B2M MHCI -6763 chip0423_231715 12.72 6.58 Chip2 T1D_6 T1D TGCATTTTCTCTCTTCTTGGTTGTTCTAGCTATGGTAAGCTCACATTT CIFSLLGCSSYGKLTF TRAV26-2*01 TRAJ52*01 2.0 109.0 TGTGCCAGCAGCTTGGGACAGGCCTACGAGCAGTACTTC CASSLGQAYEQYF TRBV7-8*01 TRBJ2-7*01 38.0 2433.0 CIFSLLGCSSYGKLTF_CASSLGQAYEQYF 1 5746 EBNA3A-193-201 EBV 0.96 1022 EBNA3A-193-201 219 5527 10 EBV EBNA3A FLRGRAYGL effector memory T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-B*08:01 B2M MHCI -6764 chip0423_105581 -3.93 9.06 Chip2 T1D_4 T1D CTGTGCTGTGGGGGAGATAACCAGGGCGGCAAGCTTATCTTC LCCGGDNQGGKLIF TRAV3*01 TRAJ23*01 11.0 614.0 TGTGCCAGCAGCTACCTCGGGACTAGCGGTGCAGAGACCCAGTATTAT CASSYLGTSGAETQYY TRBV7-9*01 TRBJ2-3*01 2.0 92.0 LCCGGDNQGGKLIF_CASSYLGTSGAETQYY 1 5856 PGT-178 PGT 0.68 1480 NEG 187 5669 2 HomoSapiens PGT LLAGIGTVPI Naive T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*02:01 B2M MHCI -6765 chip0423_80400 7.9 10.02 Chip2 T1D_4 T1D TGTGCCGTCTGGAGGGACGGAGCCTACGAGCAGTACTTC CAVWRDGAYEQYF TRBV28*01 TRBJ2-7*01 27.0 2174.0 _CAVWRDGAYEQYF 12 5718 EBV-LMP1-1 EBV 0.75 237 NEG 188 5530 8 EBV LMP1 YLLEMLWRL effector memory T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*02:01 B2M MHCI -6766 chip0423_619923 10.75 6.99 Chip2 T1D_5 T1D TGTGCCAACAGCCGAGGACCGGAGAACACTGAAGCTTTCTTT CANSRGPENTEAFF TRBV11-2*01 TRBJ1-1*01 1.0 16.0 _CANSRGPENTEAFF 1 5775 BZLF1-190-197 EBV 0.58 2156 BZLF1-190-197 210 5565 10 EBV BZLF1 RAKFKQLL effector memory T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-B*08:01 B2M MHCI -6767 chip0423_247572 6.31 12.63 Chip2 T1D_6 T1D TGTGCCTCCGCCGGAAGCCAAGGAAATCTCATCTTT CASAGSQGNLIF TRAV12-2*01 TRAJ42*01 17.0 1962.0 TGTGCCAGTAGTATAAGATCTTCCTACGAGCAGTACTTC CASSIRSSYEQYF TRBV19*01 TRBJ2-7*01 12.0 515.0 CASAGSQGNLIF_CASSIRSSYEQYF 1 5180 M1 FLU 0.65 1250 M1 188 4992 7 InfluenzaA M1 GILGFVFTL transitional T cells between effector and memory populations PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*02:01 B2M MHCI -6768 chip0423_172436 -0.34 7.19 Chip2 healthy_4 healthy TGCGCCAGCGTCTCACCGGGACTAGCGGTGAATGAGCAGTTCTTC CASVSPGLAVNEQFF TRBV12-3*01,TRBV12-4*01 TRBJ2-1*01 24.0 1418.0 _CASVSPGLAVNEQFF 1 6150 PGT-178 PGT 0.44 1480 PGT-178 226 5924 3 HomoSapiens PGT LLAGIGTVPI Naive T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*02:01 B2M MHCI -6769 chip0423_33200 -2.92 7.97 Chip2 T1D_5 T1D TGTGCAGGGACGGGGACTTATAACACCGACAAGCTCATCTTT CAGTGTYNTDKLIF TRAV25*01 TRAJ34*01 29.0 1730.0 CAGTGTYNTDKLIF_ 1 6301 IAPP-STN-9 IAPP 0.45 48 IAPP-STN-9 181 6120 2 HomoSapiens IAPP STNVGSNTY Naive T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*01:01 B2M MHCI -6770 chip0423_451125 8.75 9.84 Chip2 T1D_4 T1D TGTGCCGTGATCGGTTATACTGGAGGCTTCAAAACTATCTTT CAVIGYTGGFKTIF TRAV12-2*01 TRAJ9*01 77.0 4149.0 TGTGCCAGCAGCGTAGTACCCGGGGAGAACGAAAAACTGTTTTTT CASSVVPGENEKLFF TRBV9*01 TRBJ1-4*01 32.0 947.0 CAVIGYTGGFKTIF_CASSVVPGENEKLFF 1 6863 BZLF1-190-197 EBV 0.59 2156 NEG 174 6689 8 EBV BZLF1 RAKFKQLL effector memory T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-B*08:01 B2M MHCI -6771 chip0423_130273 -1.84 9.24 Chip2 T1D_4 T1D TGTGCCGTGAGGCCTGACAGCTGGGGGAAATTGCAGTTT CAVRPDSWGKLQF TRAV8-1*01 TRAJ24*01 18.0 1389.0 TGCGCCAGCAGCCAAGCTGCCGGCACCGGGGAGCTGTTTTTT CASSQAAGTGELFF TRBV4-1*01 TRBJ2-2*01 9.0 529.0 CAVRPDSWGKLQF_CASSQAAGTGELFF 1 6115 ZNT8-314-322 ZNT8 0.74 16 ZNT8-314-322 149 5966 3 HomoSapiens ZNT8 ILSAHVATA Naive T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*02:01 B2M MHCI -6772 chip0423_466909 15.04 9.79 Chip2 T1D_6 T1D TGTGCCTGCTGCGTTAGCCGGGCCCCCTACGAGCAGTACGTC CACCVSRAPYEQYV TRBV9*01 TRBJ2-7*01 8.0 666.0 _CACCVSRAPYEQYV 1 2911 EBNA3A-193-201 EBV 0.59 1022 NEG 214 2697 12 EBV EBNA3A FLRGRAYGL effector T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-B*08:01 B2M MHCI -6773 chip0423_384106 11.61 12.46 Chip2 T1D_4 T1D _ 6746 3016 BZLF1-190-197 EBV 0.81 2156 BZLF1-190-197 205 2811 11 EBV BZLF1 RAKFKQLL effector T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-B*08:01 B2M MHCI -6774 chip0423_199790 -2.03 11.18 Chip2 T1D_6 T1D TGTGCCAGCAGCCAAATAGCAGGGTTAGACAATCAGCCCCAGCATTTT CASSQIAGLDNQPQHF TRBV4-2*01 TRBJ1-5*01 38.0 1143.0 _CASSQIAGLDNQPQHF 1 4958 PGT-178 PGT 0.54 1480 NEG 170 4788 3 HomoSapiens PGT LLAGIGTVPI Naive T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*02:01 B2M MHCI -6775 chip0423_86961 11.8 7.08 Chip2 T1D_4 T1D TGTGCCAGCAGCTTAGGAGGGGGAGAGGGGGCCAGTGAGCAGTTCTTC CASSLGGGEGASEQFF TRBV7-6*01 TRBJ2-1*01 18.0 1396.0 _CASSLGGGEGASEQFF 10 5501 EBNA3A-193-201 EBV 0.6 1022 NEG 192 5309 10 EBV EBNA3A FLRGRAYGL effector memory T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-B*08:01 B2M MHCI -6776 chip0423_770602 9.05 8.62 Chip2 T1D_6 T1D TGTGCCAGCAGCTTGGGACAGGCCTACGAGCAGTACTTC CASSLGQAYEQYF TRBV7-8*01 TRBJ2-7*01 9.0 323.0 _CASSLGQAYEQYF 175 8428 EBNA3A-193-201 EBV 0.69 1022 EBNA3A-193-201 226 8202 8 EBV EBNA3A FLRGRAYGL effector memory T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-B*08:01 B2M MHCI -6777 chip0423_402218 11.93 13.94 Chip2 T1D_6 T1D TGTGCCAGCAGCTTGGGACAGGCCTACGAGCAGTACTTC CASSLGQAYEQYF TRBV7-8*01 TRBJ2-7*01 10.0 527.0 _CASSLGQAYEQYF 175 1876 EBNA3A-193-201 EBV 0.71 1022 NEG 215 1661 11 EBV EBNA3A FLRGRAYGL effector T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-B*08:01 B2M MHCI -6778 chip0423_866052 -1.87 9.3 Chip2 T1D_5 T1D TGTGCTGTGAGTCAACTCTCAGGAGGTGGTGCTGGCGGCCTCACCTTT CAVSQLSGGGAGGLTF TRAV8-4*01 TRAJ45*01 39.0 2215.0 CAVSQLSGGGAGGLTF_ 1 7950 GAD2-MMI-8 GAD65 0.67 40 GAD2-MMI-8 197 7753 3 HomoSapiens GAD2 MMIARFKM Naive T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-B*08:01 B2M MHCI -6779 chip0423_783641 10.61 7.63 Chip2 T1D_4 T1D TGTGCTGCGTTGCGGTGGGCTGCGGAGATCATCTTT CAALRWAAEIIF TRAV27*01 TRAJ30*01 23.0 869.0 TGTGCCAGCAGCCCCATGATTGGGACTAGCGGGAATGAGCAGTTCTTC CASSPMIGTSGNEQFF TRBV4-2*01 TRBJ2-1*01 50.0 1161.0 CAALRWAAEIIF_CASSPMIGTSGNEQFF 1 5179 BZLF1-190-197 EBV 1.0 2156 NEG 204 4975 10 EBV BZLF1 RAKFKQLL effector memory T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-B*08:01 B2M MHCI -6780 chip0423_182820 7.86 8.95 Chip2 T1D_5 T1D TGTGCAGAGATGGAAACCTCCTACGACAAGGTGATATTT CAEMETSYDKVIF TRAV13-2*01 TRAJ50*01 18.0 1327.0 TGTGCCAGCAGCTCCTTAAGCGGGGGGGCAGGAAATGAGCAGTTCTTC CASSSLSGGAGNEQFF TRBV7-9*01 TRBJ2-1*01 56.0 2794.0 CAEMETSYDKVIF_CASSSLSGGAGNEQFF 27 6228 BZLF1-190-197 EBV 0.84 2156 BZLF1-190-197 183 6045 8 EBV BZLF1 RAKFKQLL effector memory T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-B*08:01 B2M MHCI -6781 chip0423_877564 -1.53 8.98 Chip2 T1D_6 T1D TGTGCCAGCAGTGAACCCCGGCAGCTACGCTGGCAGTACTTC CASSEPRQLRWQYF TRBV6-1*01 TRBJ2-7*01 18.0 164.0 _CASSEPRQLRWQYF 1 6111 G6PC2-YLK-8 IGRP 0.7 27 G6PC2-YLK-8 192 5919 3 HomoSapiens G6PC2 YLKTNLFL Naive T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-B*08:01 B2M MHCI -6782 chip0423_620868 15.45 10.03 Chip2 T1D_5 T1D TGTGCAGCATTGGAAACCTCCTACGACAAGGTGATATTT CAALETSYDKVIF TRAV13-1*01 TRAJ50*01 12.0 1583.0 TGTGCCAGCAGCTCCCTGACAGGGCGGGATTCACCCCTCCACTTT CASSSLTGRDSPLHF TRBV7-2*01 TRBJ1-6*01 26.0 1087.0 CAALETSYDKVIF_CASSSLTGRDSPLHF 1 4934 BZLF1-190-197 EBV 0.69 2156 BZLF1-190-197 211 4723 12 EBV BZLF1 RAKFKQLL effector T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-B*08:01 B2M MHCI -6783 chip0423_220450 -2.67 8.24 Chip2 T1D_6 T1D TGTGACGCTTTTGGGAGAGCCAATGCAGACAAATCAACCTTT CDAFGRANADKSTF TRAV24*01 TRAJ27*01 2.0 87.0 TGTGCCAGCAGCTTTCTTATGGGGGGCTATGGCTACACCTTC CASSFLMGGYGYTF TRBV7-9*01 TRBJ1-2*01 3.0 33.0 CDAFGRANADKSTF_CASSFLMGGYGYTF 1 5786 NP44-52 FLU 0.56 474 NP44-52 182 5604 2 InfluenzaA NP CTELKLSDY Naive T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*01:01 B2M MHCI -6784 chip0423_475624 8.15 8.06 Chip2 T1D_4 T1D TGTGCCAGCAGCCAAGTCAACAACCCGGGGGATGGCTACACCTTC CASSQVNNPGDGYTF TRBV14*01 TRBJ1-2*01 5.0 123.0 _CASSQVNNPGDGYTF 94 13002 EBNA3A-158-166 EBV 0.59 444 EBNA3A-158-166 216 12786 8 EBV EBNA3A QAKWRLQTL effector memory T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-B*08:01 B2M MHCI -6785 chip0423_198758 14.65 10.21 Chip2 T1D_6 T1D TGCAGCGCCGGCAGGGACGGGACTAATGAAAAACTGTTTTTT CSAGRDGTNEKLFF TRBV29-1*01 TRBJ1-4*01 72.0 3251.0 _CSAGRDGTNEKLFF 159 3912 EBV-BLMF1 EBV 0.47 2531 NEG 225 3687 12 EBV BLMF1 GLCTLVAML effector T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*02:01 B2M MHCI -6786 chip0423_179365 -1.45 11.01 Chip2 T1D_6 T1D TGTGCGGGCGCGGGGTCTGGGGCAAACAACCTCTTCTTT CAGAGSGANNLFF TRAV27*01 TRAJ36*01 4.0 153.0 TGCGCCAGCAGTCAATTTAGGAATCAGGGGTACCAAGAGACCCAGTACTTC CASSQFRNQGYQETQYF TRBV4-3*01 TRBJ2-5*01 144.0 6549.0 CAGAGSGANNLFF_CASSQFRNQGYQETQYF 1 5639 ZNT8-YAK-9 ZNT8 0.89 59 NEG 196 5443 3 HomoSapiens ZNT8 YAKWKLCSA Naive T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-B*08:01 B2M MHCI -6787 chip0423_870519 16.01 10.92 Chip2 healthy_4 healthy TGCATCCTTCCCCTAGCTGGTGGTACTAGCTATGGAAAGCTGACATTT CILPLAGGTSYGKLTF TRAV26-2*01 TRAJ52*01 23.0 1097.0 CILPLAGGTSYGKLTF_ 55 2071 EBNA3A-193-201 EBV 0.75 1022 NEG 191 1880 12 EBV EBNA3A FLRGRAYGL effector T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-B*08:01 B2M MHCI -6788 chip0423_772342 5.85 11.81 Chip2 T1D_6 T1D TGTGCCAGCAGTTTCTACTATTCATATGGCTACACCTTC CASSFYYSYGYTF TRBV28*01 TRBJ1-2*01 36.0 1561.0 _CASSFYYSYGYTF 1 5848 PGT-178 PGT 0.5 1480 NEG 195 5653 7 HomoSapiens PGT LLAGIGTVPI transitional T cells between effector and memory populations PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*02:01 B2M MHCI -6789 chip0423_274872 11.38 10.82 Chip2 T1D_4 T1D TGTGCTGTGAGTGATGGAGAAGGAGCCCAGAAGCTGGTATTT CAVSDGEGAQKLVF TRAV8-6*01 TRAJ54*01 1.0 41.0 CAVSDGEGAQKLVF_ 12 4849 BZLF1-190-197 EBV 0.83 2156 BZLF1-190-197 204 4645 9 EBV BZLF1 RAKFKQLL effector memory T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-B*08:01 B2M MHCI -6790 chip0423_841624 4.9 10.78 Chip2 T1D_4 T1D TGTGCTGTCCCCGGCGGTCGCCCCGGCCCTCTCATCTTT CAVPGGRPGPLIF TRAV8-3*01 TRAJ42*01 10.0 970.0 TGTGCCAGCAGTTACTCAAGTACAGGGGAGTACTTC CASSYSSTGEYF TRBV6-2*01,TRBV6-3*01 TRBJ2-7*01 5.0 319.0 CAVPGGRPGPLIF_CASSYSSTGEYF 1 5467 EBV-LMP1-1 EBV 1.0 237 NEG 177 5290 6 EBV LMP1 YLLEMLWRL central memory T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*02:01 B2M MHCI -6791 chip0423_755396 9.0 11.03 Chip2 T1D_6 T1D TGTGCCGTGGGCCCTTACATTAAAGCTGGAGGCAACAAGCTTCCTTTT CAVGPYIKAGGNKLPF TRAV22*01 TRAJ17*01 4.0 281.0 TGTGCCAGCAGTTTATTGGACTCCCGAACCGGGACCTACGAGCAGTACTTC CASSLLDSRTGTYEQYF TRBV27*01 TRBJ2-7*01 35.0 1755.0 CAVGPYIKAGGNKLPF_CASSLLDSRTGTYEQYF 1 7013 EBNA3A-158-166 EBV 0.84 444 EBNA3A-158-166 216 6797 9 EBV EBNA3A QAKWRLQTL effector memory T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-B*08:01 B2M MHCI -6792 chip0423_619407 14.29 10.37 Chip2 healthy_4 healthy TGCAGCGTTGGCGCAGGGGGAACTAATGAAAAACTGTTTTTT CSVGAGGTNEKLFF TRBV29-1*01 TRBJ1-4*01 117.0 5803.0 _CSVGAGGTNEKLFF 51 3320 EBV-BLMF1 EBV 0.67 2531 NEG 192 3128 12 EBV BLMF1 GLCTLVAML effector T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*02:01 B2M MHCI -6793 chip0423_499077 13.1 7.34 Chip2 T1D_6 T1D TGCATCCTCCCACTTGCTGGTGGTACTAGCTATGGAAAGCTGACATTT CILPLAGGTSYGKLTF TRAV26-2*01 TRAJ52*01 46.0 1717.0 TGTGCCAGCAGCTTGGGACAGGCCTACGAGCAGTACTTC CASSLGQAYEQYF TRBV7-8*01 TRBJ2-7*01 30.0 1679.0 CILPLAGGTSYGKLTF_CASSLGQAYEQYF 308 5587 EBNA3A-193-201 EBV 0.87 1022 NEG 205 5382 10 EBV EBNA3A FLRGRAYGL effector memory T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-B*08:01 B2M MHCI -6794 chip0423_450137 -1.72 7.0 Chip2 T1D_6 T1D TGTGCCGTACCCCGGCCAAATGACATGCGCTTT CAVPRPNDMRF TRAV12-2*01 TRAJ43*01 33.0 4059.0 CAVPRPNDMRF_ 1 8138 PREINS-2-10 INS 0.84 37 PREINS-2-10 184 7954 3 HomoSapiens PREINS ALWMRLLPL Naive T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*02:01 B2M MHCI -6795 chip0423_469239 5.16 10.28 Chip2 T1D_4 T1D TGTGCCAGCAGCCTGATGGCGGGGAGCACAGATACGCAGTACTTT CASSLMAGSTDTQYF TRBV27*01 TRBJ2-3*01 64.0 2678.0 _CASSLMAGSTDTQYF 1 6117 EBV-LMP1-2 EBV 1.0 41 NEG 197 5920 6 EBV LMP1 YLQQNWWTL central memory T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*02:01 B2M MHCI -6796 chip0423_480562 -3.43 9.35 Chip2 T1D_4 T1D TGTGCCGTGAACGGGTACCAGGGGGGAAAGCTTATCTTC CAVNGYQGGKLIF TRAV12-2*01 TRAJ23*01 34.0 1875.0 TGTGCCAGCAGCCCTCAAGCGACGGGGCCGTACAATGAGCAGTTCTTC CASSPQATGPYNEQFF TRBV13*01 TRBJ2-1*01 20.0 1152.0 CAVNGYQGGKLIF_CASSPQATGPYNEQFF 1 6296 PGT-178 PGT 0.79 1480 PGT-178 164 6132 2 HomoSapiens PGT LLAGIGTVPI Naive T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*02:01 B2M MHCI -6797 chip0423_113531 7.26 10.34 Chip2 T1D_5 T1D TGTGCCAGCAGCTTAATTGGGTCCGGGACACCAGGGAACACTGAAGCTTTCTTT CASSLIGSGTPGNTEAFF TRBV11-1*01 TRBJ1-1*01 31.0 884.0 _CASSLIGSGTPGNTEAFF 2 7640 BZLF1-190-197 EBV 0.92 2156 NEG 192 7448 7 EBV BZLF1 RAKFKQLL transitional T cells between effector and memory populations PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-B*08:01 B2M MHCI -6798 chip0423_845373 14.37 10.07 Chip2 T1D_5 T1D TGTGCAGCAATGGAAACCTCCTACGACAAGGTGATATTT CAAMETSYDKVIF TRAV13-1*01 TRAJ50*01 16.0 907.0 TGTGCCACCAGTGGGCCAGGTGAGGGAGAACTGTTTTTT CATSGPGEGELFF TRBV24-1*01 TRBJ1-4*01 36.0 1794.0 CAAMETSYDKVIF_CATSGPGEGELFF 1 3582 BZLF1-190-197 EBV 0.82 2156 NEG 175 3407 12 EBV BZLF1 RAKFKQLL effector T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-B*08:01 B2M MHCI -6799 chip0423_89048 -2.16 7.92 Chip2 T1D_6 T1D TGTGCCGCCCGCCCCGGGGGCAACACAGGCAAACTAATCTTT CAARPGGNTGKLIF TRAV8-1*01 TRAJ37*01 18.0 932.0 TGCGCCAGCAGCCAAGATTTTGGCAGGGGAACACTGAAGCTTTCTTT CASSQDFgg?QGNTEAFF TRBV4-1*01 TRBJ1-1*01 19.0 655.0 CAARPGGNTGKLIF_CASSQDFgg?QGNTEAFF 1 7121 ZNT8-YAY-8 ZNT8 0.87 54 ZNT8-YAY-8 169 6952 3 HomoSapiens ZNT8 YAYAKWKL Naive T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-B*08:01 B2M MHCI -6800 chip0423_580197 6.05 9.23 Chip2 T1D_4 T1D TGCAGTGCCATCGAATTCCGGGACCCTAATCAGCCCCAGCATTTT CSAIEFRDPNQPQHF TRBV20-1*01 TRBJ1-5*01 13.0 373.0 _CSAIEFRDPNQPQHF 3 5466 EBV-LMP1-1 EBV 0.53 237 EBV-LMP1-1 187 5279 6 EBV LMP1 YLLEMLWRL central memory T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*02:01 B2M MHCI -6801 chip0423_27295 10.46 9.39 Chip2 T1D_5 T1D TGTGCTCTTTGTGACAGAGGCTCAACCCTGGGGAGGCTATACTTT CALCDRGSTLGRLYF TRAV19*01 TRAJ18*01 22.0 1690.0 TGTGCCAGCAGCTTAGGACGTGAAATCGGGCCCATCGAGCAGTTCTTC CASSLGREIGPIEQFF TRBV7-8*01 TRBJ2-1*01 66.0 3054.0 CALCDRGSTLGRLYF_CASSLGREIGPIEQFF 4 4337 BZLF1-190-197 EBV 0.43 2156 NEG 188 4149 9 EBV BZLF1 RAKFKQLL effector memory T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-B*08:01 B2M MHCI -6802 chip0423_473130 5.44 9.9 Chip2 T1D_4 T1D TGTGCTCTCACTACCTATGGTCAGAATTTTGTCTTT CALTTYGQNFVF TRAV38-1*01 TRAJ26*01 8.0 854.0 TGCAGTGCCTCTCGTGACTCCTACGAGCAGTACTTC CSASRDSYEQYF TRBV20-1*01 TRBJ2-7*01 1.0 321.0 CALTTYGQNFVF_CSASRDSYEQYF 15 7823 EBV-LMP1-1 EBV 0.71 237 EBV-LMP1-1 177 7646 6 EBV LMP1 YLLEMLWRL central memory T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*02:01 B2M MHCI -6803 chip0423_844415 0.04 8.53 Chip2 healthy_3 healthy TGTGCAGCAAGTGGGGATTATGGTGGTGCTCCAAACAAGCTCCTCTTT CAASGDYGGAPNKLLF TRAV13-1*01 TRAJ32*01 1.0 10.0 TGTGCCAGCAGCCAATATGGCTACGAGCAGTACTTC CASSQYGYEQYF TRBV4-2*01 TRBJ2-7*01 83.0 5214.0 CAASGDYGGAPNKLLF_CASSQYGYEQYF 1 8188 MART1-A28L MART1 0.41 84 MART1-A28L 155 8033 4 HomoSapiens MART1 ALGIGILTV Naive T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*02:01 B2M MHCI -6804 chip0423_323915 -3.57 10.91 Chip2 T1D_6 T1D TGTGCTCTTCATTCCAGAGATGACACGGTGATCTTT CALHSRDDTVIF TRAV19*01 TRAJ30*01 6.0 251.0 TGTGCCAGCAGTTTCGGACTAGCGGGCACCTACGAGCAGTACTTC CASSFGLAGTYEQYF TRBV12-3*01,TRBV12-4*01 TRBJ2-7*01 39.0 1912.0 CALHSRDDTVIF_CASSFGLAGTYEQYF 1 5594 ZNT8-VTD-9 ZNT8 0.53 65 NEG 185 5409 4 HomoSapiens ZNT8 VTDAAHLLI Naive T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*01:01 B2M MHCI -6805 chip0423_883026 13.43 7.01 Chip2 T1D_6 T1D TGCAGCGCCGGCAGGGACGGGACTAATGAAAAACTGTTTTTT CSAGRDGTNEKLFF TRBV29-1*01 TRBJ1-4*01 133.0 7323.0 _CSAGRDGTNEKLFF 159 4026 EBV-BLMF1 EBV 0.57 2531 NEG 216 3810 10 EBV BLMF1 GLCTLVAML effector memory T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*02:01 B2M MHCI -6806 chip0423_765752 14.63 12.08 Chip2 T1D_5 T1D TGTGCCAGCAGCTTAGTACAGGGTGTCCACAATGAGCAGTTCTTC CASSLVQGVHNEQFF TRBV7-9*01 TRBJ2-1*01 10.0 463.0 _CASSLVQGVHNEQFF 3 2416 BZLF1-190-197 EBV 0.55 2156 NEG 196 2220 12 EBV BZLF1 RAKFKQLL effector T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-B*08:01 B2M MHCI -6807 chip0423_99436 -1.15 10.48 Chip2 T1D_6 T1D TGTGCAATGAGCTTATCTAACTTTGGAAATGAGAAATTAACCTTT CAMSLSNFGNEKLTF TRAV12-3*01 TRAJ48*01 47.0 1317.0 TGTGCCAGCAGTCAAGAAGGACAGGGGGACGGAGCTTTCTTT CASSQEGQGDGAFF TRBV28*01 TRBJ1-1*01 37.0 1671.0 CAMSLSNFGNEKLTF_CASSQEGQGDGAFF 1 7350 PGT-178 PGT 0.8 1480 PGT-178 226 7124 3 HomoSapiens PGT LLAGIGTVPI Naive T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*02:01 B2M MHCI -6808 chip0423_553093 -3.46 8.31 Chip2 T1D_6 T1D TGTGTGGTGTACCATAACACCGACAAGCTCATCTTT CVVYHNTDKLIF TRAV12-1*01 TRAJ34*01 6.0 430.0 TGCAGTGCTAGAGAAGGGTGGAACGAACTCGAAGAGACCCAGTACTTC CSAREGWNELEETQYF TRBV20-1*01 TRBJ2-5*01 24.0 992.0 CVVYHNTDKLIF_CSAREGWNELEETQYF 1 6691 PB1-590-599 FLU 0.58 37 NEG 190 6501 2 InfluenzaA PB1 LVSDGGPNLY Naive T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*01:01 B2M MHCI -6809 chip0423_525521 8.27 7.92 Chip2 healthy_4 healthy TGTGCCAGCAGCTTGCAGGACAGTTCCTACGAGCAGTACTTC CASSLQDSSYEQYF TRBV5-6*01 TRBJ2-7*01 18.0 1155.0 _CASSLQDSSYEQYF 1 9670 BZLF1-190-197 EBV 0.53 2156 NEG 187 9483 8 EBV BZLF1 RAKFKQLL effector memory T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-B*08:01 B2M MHCI -6810 chip0423_489825 15.07 8.4 Chip2 T1D_5 T1D TGTGCAGCAACGGAAACCTCCTACGACAAGGTGATATTT CAATETSYDKVIF TRAV13-1*01 TRAJ50*01 31.0 2182.0 TGTGCCAGCAGCAGCCTTACGAACACTGAAGCTTTCTTT CASSSLTNTEAFF TRBV7-9*01 TRBJ1-1*01 17.0 934.0 CAATETSYDKVIF_CASSSLTNTEAFF 3 3635 BZLF1-190-197 EBV 0.55 2156 NEG 202 3433 12 EBV BZLF1 RAKFKQLL effector T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-B*08:01 B2M MHCI -6811 chip0423_95215 11.04 10.46 Chip2 T1D_6 T1D TGCATCGCCGTTACCTCGTTCCGGTAACCAGTTTTATTTT CIAVTStt??ccGNQFYF TRAV26-1*01 TRAJ49*01 18.0 1048.0 TGCAGCGCCGGCAGGGACGGGACTAATGAAAAACTGTTTTTT CSAGRDGTNEKLFF TRBV29-1*01 TRBJ1-4*01 136.0 6612.0 CIAVTStt??ccGNQFYF_CSAGRDGTNEKLFF 1 5412 EBV-BLMF1 EBV 0.44 2531 NEG 165 5247 9 EBV BLMF1 GLCTLVAML effector memory T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*02:01 B2M MHCI -6812 chip0423_74460 14.64 11.07 Chip2 T1D_5 T1D TGTGCCGTGAACATCAGGTTTTCTGGTGGCTACAATAAGCTGATTTTT CAVNIRFSGGYNKLIF TRAV12-2*01 TRAJ4*01 83.0 4085.0 TGTGCCAGTAGTCCAAGAGGGATGAACACTGAAGCTTTCTTT CASSPRGMNTEAFF TRBV19*01 TRBJ1-1*01 33.0 1168.0 CAVNIRFSGGYNKLIF_CASSPRGMNTEAFF 1 2628 BZLF1-190-197 EBV 0.73 2156 NEG 163 2465 12 EBV BZLF1 RAKFKQLL effector T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-B*08:01 B2M MHCI -6813 chip0423_849838 -2.98 9.78 Chip2 healthy_3 healthy TGTGCCGTGACAATGGTGGGGAAACACCCCTCTTGTCTTT CAVTMVgg??gaNTPLVF TRAV12-2*01 TRAJ29*01 27.0 1990.0 CTGTGCCAGCCGTGAAGCGCTGGGGTTCACTGAAGCTTTCTTT LCQP*SA??gGFTEAFF TRBV2*01 TRBJ1-1*01 21.0 841.0 CAVTMVgg??gaNTPLVF_LCQP*SA??gGFTEAFF 1 6476 DUF5119-124-133 DUF5119 0.69 7 NEG 150 6326 3 HomoSapiens DUF5119 MVWGPDPLYV Naive T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*02:01 B2M MHCI -6814 chip0423_655668 9.96 9.63 Chip2 T1D_6 T1D TGTGCAGAGATCATGAATTCAGGATACAGCACCCTCACCTTC CAEIMNSGYSTLTF TRAV5*01 TRAJ11*01 3.0 93.0 TGTGCCAGCAGCTTGGGACAGGCCTACGAGCAGTACTTC CASSLGQAYEQYF TRBV7-8*01 TRBJ2-7*01 6.0 213.0 CAEIMNSGYSTLTF_CASSLGQAYEQYF 1 5968 EBNA3A-193-201 EBV 0.59 1022 NEG 208 5760 9 EBV EBNA3A FLRGRAYGL effector memory T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-B*08:01 B2M MHCI -6815 chip0423_686093 -2.06 10.19 Chip2 T1D_4 T1D TGTGCAATGACGGGATCTAACTTTGGAAATGAGAAATTAACCTTT CAMTGSNFGNEKLTF TRAV12-3*01 TRAJ48*01 103.0 3571.0 TGCAGTGCTTGGATACAAGAGACCCAGTACTTC CSAWIQETQYF TRBV20-1*01 TRBJ2-5*01 28.0 2921.0 CAMTGSNFGNEKLTF_CSAWIQETQYF 1 6638 PGT-178 PGT 0.81 1480 PGT-178 174 6464 3 HomoSapiens PGT LLAGIGTVPI Naive T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*02:01 B2M MHCI -6816 chip0423_167895 7.22 10.1 Chip2 T1D_6 T1D TGTGCAATGAGCGGATTCCATCAAACTGGGGCAAACAACCTCTTCTTT CAMSGFHQTGANNLFF TRAV12-3*01 TRAJ36*01 13.0 465.0 CAMSGFHQTGANNLFF_ 1 7455 EBNA3A-158-166 EBV 0.93 444 EBNA3A-158-166 180 7275 8 EBV EBNA3A QAKWRLQTL effector memory T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-B*08:01 B2M MHCI -6817 chip0423_790758 11.03 7.19 Chip2 T1D_5 T1D TGTGCAGCAAGTGAAACCTCCTACGACAAGGTGATATTT CAASETSYDKVIF TRAV13-1*01 TRAJ50*01 4.0 289.0 TGTGCCAGCAGCTTATTCCCCCCGAGCGGGGCACTAGCACAGATACGCAGTATTTT CASSLFPPSg?gGTSTDTQYF TRBV11-1*01 TRBJ2-3*01 33.0 1120.0 CAASETSYDKVIF_CASSLFPPSg?gGTSTDTQYF 1 4412 BZLF1-190-197 EBV 0.44 2156 NEG 183 4229 10 EBV BZLF1 RAKFKQLL effector memory T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-B*08:01 B2M MHCI -6818 chip0423_452353 5.36 9.18 Chip2 T1D_4 T1D TGTGCCAGCAGTTACTCAAGTACAGGGGAGTACTTC CASSYSSTGEYF TRBV6-2*01,TRBV6-3*01 TRBJ2-7*01 6.0 233.0 _CASSYSSTGEYF 32 6248 EBV-LMP1-1 EBV 0.73 237 NEG 225 6023 6 EBV LMP1 YLLEMLWRL central memory T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*02:01 B2M MHCI -6819 chip0423_415093 12.26 6.4 Chip2 T1D_5 T1D TGTGCAGCAACGGAAACCTCCTACGACAAGGTGATATTT CAATETSYDKVIF TRAV13-1*01 TRAJ50*01 15.0 596.0 TGTGCCAGCAGCCCTCTTGGGAGCAATGAAAAACTGTTTTTT CASSPLGSNEKLFF TRBV7-9*01 TRBJ1-4*01 13.0 320.0 CAATETSYDKVIF_CASSPLGSNEKLFF 25 6269 BZLF1-190-197 EBV 0.62 2156 NEG 211 6058 10 EBV BZLF1 RAKFKQLL effector memory T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-B*08:01 B2M MHCI -6820 chip0423_200498 14.3 9.81 Chip2 T1D_4 T1D TGTGCCAGCAGCTCGACAGGGGGCGGGGATCAGCCCCAGCATTTT CASSSTGGGDQPQHF TRBV7-9*01 TRBJ1-5*01 58.0 2267.0 _CASSSTGGGDQPQHF 2 4181 BZLF1-190-197 EBV 0.43 2156 NEG 204 3977 12 EBV BZLF1 RAKFKQLL effector T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-B*08:01 B2M MHCI -6821 chip0423_378901 10.67 7.83 Chip2 T1D_6 T1D TGCATCCTCCCACTTGCTGGTGGTACTAGCTATGGAAAGCTGACATTT CILPLAGGTSYGKLTF TRAV26-2*01 TRAJ52*01 78.0 3989.0 TGTGCCAGCAGCTTGGGACAGGCCTACGAGCAGTACTTC CASSLGQAYEQYF TRBV7-8*01 TRBJ2-7*01 3.0 62.0 CILPLAGGTSYGKLTF_CASSLGQAYEQYF 308 7265 EBNA3A-193-201 EBV 0.7 1022 EBNA3A-193-201 203 7062 10 EBV EBNA3A FLRGRAYGL effector memory T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-B*08:01 B2M MHCI -6822 chip0423_571889 -2.81 11.92 Chip2 T1D_6 T1D TGTGCTCTCCTTTGGGGGGACGCCGGCTTTCAGAAACTTGTATTT CALLWGDAGFQKLVF TRAV16*01 TRAJ8*01 61.0 2378.0 TGTGCCAGCAGCGTAGACCCGGGGAACACTGAAGCTTTCTTT CASSVDPGNTEAFF TRBV9*01 TRBJ1-1*01 64.0 2163.0 CALLWGDAGFQKLVF_CASSVDPGNTEAFF 1 4902 NP140-148 FLU 0.83 102 NEG 190 4712 1 InfluenzaA NP HSNLNDATY Naive T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*01:01 B2M MHCI -6823 chip0423_294463 11.01 10.7 Chip2 T1D_6 T1D TGCAGCGCCGGCAGGGACGGGACTAATGAAAAACTGTTTTTT CSAGRDGTNEKLFF TRBV29-1*01 TRBJ1-4*01 67.0 3211.0 _CSAGRDGTNEKLFF 159 4119 EBV-BLMF1 EBV 0.86 2531 NEG 192 3927 9 EBV BLMF1 GLCTLVAML effector memory T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*02:01 B2M MHCI -6824 chip0423_54777 12.67 8.24 Chip2 T1D_4 T1D TGCATCGTCAGAGTCGGGGTCTCTGGGGCTGGGGGTTACCAACTCACTTTC CIVRVGVSGAGGYQLTF TRAV26-1*01 TRAJ28*01 29.0 1505.0 TGCAGCGTCGGTTCCGGGGAGGGTGCCGAGCAGTACTTC CSVGSGEGAEQYF TRBV29-1*01 TRBJ2-7*01 76.0 6187.0 CIVRVGVSGAGGYQLTF_CSVGSGEGAEQYF 1 4186 BZLF1-190-197 EBV 0.58 2156 BZLF1-190-197 200 3986 10 EBV BZLF1 RAKFKQLL effector memory T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-B*08:01 B2M MHCI -6825 chip0423_512846 11.92 9.46 Chip2 T1D_6 T1D TGCATCCTCCCACTTGCTGGTGGTACTAGCTATGGAAAGCTGACATTT CILPLAGGTSYGKLTF TRAV26-2*01 TRAJ52*01 1.0 33.0 TGTGCCAGCAGCTTGGGACAGGCCTACGAGCAGTACTTC CASSLGQAYEQYF TRBV7-8*01 TRBJ2-7*01 22.0 1146.0 CILPLAGGTSYGKLTF_CASSLGQAYEQYF 308 4439 EBNA3A-193-201 EBV 0.86 1022 EBNA3A-193-201 210 4229 10 EBV EBNA3A FLRGRAYGL effector memory T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-B*08:01 B2M MHCI -6826 chip0423_723072 12.99 7.18 Chip2 T1D_4 T1D TGTGCTGTGAGTGATGGAGAAGGAGCCCAGAAGCTGGTATTT CAVSDGEGAQKLVF TRAV8-6*01 TRAJ54*01 37.0 1974.0 TGTGCCAGCAGCTTAACGGTTCTGGCAGGTCCAAACACTGAAGCTTTCTTT CASSLTVLAGPNTEAFF TRBV7-3*01 TRBJ1-1*01 5.0 115.0 CAVSDGEGAQKLVF_CASSLTVLAGPNTEAFF 44 4087 BZLF1-190-197 EBV 0.72 2156 NEG 204 3883 10 EBV BZLF1 RAKFKQLL effector memory T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-B*08:01 B2M MHCI -6827 chip0423_232417 11.71 7.83 Chip2 T1D_4 T1D TGTGCTGTGAGTGCTGGAGAAGGCCCCCCGCCGCCCGCATTT CAVSAGEGPPPPAF TRAV8-6*01 TRAJ54*01 19.0 855.0 TGTGCCAGCAGCCAAGTCAACAACCCGGGGGATGGCTACACCTTC CASSQVNNPGDGYTF TRBV14*01 TRBJ1-2*01 26.0 860.0 CAVSAGEGPPPPAF_CASSQVNNPGDGYTF 1 4585 EBNA3A-158-166 EBV 0.58 444 NEG 180 4405 10 EBV EBNA3A QAKWRLQTL effector memory T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-B*08:01 B2M MHCI -6828 chip0423_182018 11.17 7.55 Chip2 T1D_4 T1D TGCATCCTCCCTCTTGCTGGTGGTACTAACTATGGAAAGCTGACATTT CILPLAGGTNYGKLTF TRAV26-2*01 TRAJ52*01 68.0 3037.0 TGTGCCAGCAGCTTAGGTCAAGCCTACGAGCAGTACTTC CASSLGQAYEQYF TRBV7-8*01 TRBJ2-7*01 70.0 3821.0 CILPLAGGTNYGKLTF_CASSLGQAYEQYF 3 7026 EBNA3A-193-201 EBV 0.52 1022 NEG 209 6817 10 EBV EBNA3A FLRGRAYGL effector memory T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-B*08:01 B2M MHCI -6829 chip0423_579556 -1.57 7.77 Chip2 T1D_6 T1D TGTGCAATCTCCCCTTCTAACTTTGGAAATGAGAAATTAACCTTT CAISPSNFGNEKLTF TRAV12-3*01 TRAJ48*01 37.0 1767.0 TGTGCCAGCAACGCAATAATAACGGATCGGACAGCGGATACGATTTCCTACAATGAGCAGTTCTTC CASNAIITDRTADTISYNEQFF TRBV7-8*01 TRBJ2-1*01 3.0 17.0 CAISPSNFGNEKLTF_CASNAIITDRTADTISYNEQFF 1 7696 PGT-178 PGT 0.6 1480 PGT-178 185 7511 3 HomoSapiens PGT LLAGIGTVPI Naive T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*02:01 B2M MHCI -6830 chip0423_217822 5.4 10.79 Chip2 T1D_6 T1D TGCGCCAGCAGTGACATTAGGGAGGGGCAGGGTGAAGCTTTCTTT CASSDIREGQGEAFF TRBV10-2*01 TRBJ1-1*01 58.0 1810.0 _CASSDIREGQGEAFF 37 7638 EBNA3A-158-166 EBV 0.65 444 NEG 175 7463 6 EBV EBNA3A QAKWRLQTL central memory T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-B*08:01 B2M MHCI -6831 chip0423_132577 13.07 10.77 Chip2 T1D_6 T1D TGCAGCGCCGGCAGGGACGGGACTAATGAAAAACTGTTTTTT CSAGRDGTNEKLFF TRBV29-1*01 TRBJ1-4*01 83.0 3743.0 _CSAGRDGTNEKLFF 159 2943 EBV-BLMF1 EBV 0.8 2531 NEG 201 2742 9 EBV BLMF1 GLCTLVAML effector memory T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*02:01 B2M MHCI -6832 chip0423_834540 -1.62 11.73 Chip2 T1D_6 T1D CGTGTCTGTGAGAGCCGAGGGATCCAGCACCCTCACCTTT RVCESRgg??gaSSTLTF TRAV3*01 TRAJ11*01 29.0 1958.0 TGTGCCAGCAGTGCAGACACGAGCTCCTACAATGAGCAGTTCTTC CASSADTSSYNEQFF TRBV7-6*01 TRBJ2-1*01 10.0 363.0 RVCESRgg??gaSSTLTF_CASSADTSSYNEQFF 1 4740 M1 FLU 0.8 1250 NEG 177 4563 3 InfluenzaA M1 GILGFVFTL Naive T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*02:01 B2M MHCI -6833 chip0423_802594 12.19 6.63 Chip2 T1D_4 T1D TGTGCCAGCAGCTCGACAGGGGGCGGGGATCAGCCCCAGCATTTT CASSSTGGGDQPQHF TRBV7-9*01 TRBJ1-5*01 22.0 799.0 _CASSSTGGGDQPQHF 2 6096 BZLF1-190-197 EBV 0.5 2156 NEG 228 5868 10 EBV BZLF1 RAKFKQLL effector memory T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-B*08:01 B2M MHCI -6834 chip0423_734846 5.92 13.35 Chip2 healthy_3 healthy TGTGCAGAGACGGCATCTAACCAGGCAGGCACTGCTCTGCTCTTT CAETASNQAGTALLF TRAV13-2*01 TRAJ15*01 16.0 648.0 CAETASNQAGTALLF_ 1 6761 NP44-52 FLU 0.88 474 NP44-52 169 6592 7 InfluenzaA NP CTELKLSDY transitional T cells between effector and memory populations PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*01:01 B2M MHCI -6835 chip0423_157425 10.72 10.37 Chip2 T1D_4 T1D CGCATCGTCAGAGAGGGAGGAGGTGCTGACGGACTCACCTTT RIVREGGGADGLTF TRAV26-1*01 TRAJ45*01 34.0 1796.0 TGTGCCAGCAGCTTAGCGGTCGGAGAAGGGCCCCAGCATTTT CASSLAVGEGPQHF TRBV7-9*01 TRBJ1-5*01 22.0 693.0 RIVREGGGADGLTF_CASSLAVGEGPQHF 3 4204 BZLF1-190-197 EBV 0.81 2156 BZLF1-190-197 216 3988 9 EBV BZLF1 RAKFKQLL effector memory T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-B*08:01 B2M MHCI -6836 chip0423_416011 9.76 8.66 Chip2 T1D_6 T1D TGCATCCTCCCACTTGCTGGTGGTACTAGCTATGGAAAGCTGACATTT CILPLAGGTSYGKLTF TRAV26-2*01 TRAJ52*01 68.0 2906.0 TGTGCCAGCAGCTTGGGACAGGCCTACGAGCAGTACTTC CASSLGQAYEQYF TRBV7-8*01 TRBJ2-7*01 33.0 1557.0 CILPLAGGTSYGKLTF_CASSLGQAYEQYF 308 6539 EBNA3A-193-201 EBV 0.71 1022 EBNA3A-193-201 196 6343 8 EBV EBNA3A FLRGRAYGL effector memory T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-B*08:01 B2M MHCI -6837 chip0423_725308 -1.16 8.34 Chip2 T1D_6 T1D TGTGCTAACTCCATGGATAGCAACTATCAGTTAATCTGG CANSMDSNYQLIW TRAV38-1*01 TRAJ33*01 41.0 4003.0 TGTGCCAGCAGCTTCCTAGGGCTAGCGAGGGATGAGCAGTTCTTC CASSFLGLARDEQFF TRBV7-2*01 TRBJ2-1*01 6.0 253.0 CANSMDSNYQLIW_CASSFLGLARDEQFF 1 4549 GP160-311-320 HIV 0.71 109 NEG 175 4374 4 HIV-1 GP160 RGPGRAFVTI Naive T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*02:01 B2M MHCI -6838 chip0423_500879 8.47 10.99 Chip2 T1D_4 T1D TGTGCAGCAAGCGACCGCCTTCCAGGAGGAAGCTACATACCTACATTT CAASDRLPGGSYIPTF TRAV13-1*01 TRAJ6*01 15.0 325.0 TGCAGTGCTACTAACCAGTACGACGGACCCGACACTGAAGCTTTCTTT CSATNQYDGPDTEAFF TRBV20-1*01 TRBJ1-1*01 28.0 1025.0 CAASDRLPGGSYIPTF_CSATNQYDGPDTEAFF 21 5978 BZLF1-190-197 EBV 0.5 2156 NEG 192 5786 9 EBV BZLF1 RAKFKQLL effector memory T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-B*08:01 B2M MHCI -6839 chip0423_416953 11.85 7.49 Chip2 T1D_4 T1D TGTGCAGCAACGGAAACCTCCTACGACAAGGTGATATTT CAATETSYDKVIF TRAV13-1*01 TRAJ50*01 7.0 321.0 TGTGCCAGCAGCCAAGTCAACAACCCGGGGGATGGCTACACCTTC CASSQVNNPGDGYTF TRBV14*01 TRBJ1-2*01 6.0 273.0 CAATETSYDKVIF_CASSQVNNPGDGYTF 1 4468 EBNA3A-158-166 EBV 0.62 444 NEG 185 4283 10 EBV EBNA3A QAKWRLQTL effector memory T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-B*08:01 B2M MHCI -6840 chip0423_146879 7.23 11.73 Chip2 T1D_6 T1D TGTGCCTCCCAAGGAGGAAGCCAAGGAAATCTCATCTTT CASQGGSQGNLIF TRAV20*01 TRAJ42*01 23.0 1443.0 CASQGGSQGNLIF_ 7 5412 ROTA-VP6 ROTA 0.65 47 ROTA-VP6 198 5214 7 RotavirusA VP6 TLLANVTAV transitional T cells between effector and memory populations PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*02:01 B2M MHCI -6841 chip0423_626800 15.89 10.67 Chip2 T1D_4 T1D TGCATCGTCAGAGAGGGAGGAGGTGCTGACGGACTCACCTTT CIVREGGGADGLTF TRAV26-1*01 TRAJ45*01 25.0 1410.0 TGTGCCAGCAGCTTAGCGGTCGGAGAAGGGCCCCAGCATTTT CASSLAVGEGPQHF TRBV7-9*01 TRBJ1-5*01 15.0 469.0 CIVREGGGADGLTF_CASSLAVGEGPQHF 68 2743 BZLF1-190-197 EBV 0.79 2156 NEG 216 2527 12 EBV BZLF1 RAKFKQLL effector T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-B*08:01 B2M MHCI -6842 chip0423_596278 -1.93 10.77 Chip2 T1D_6 T1D TGTGCAATGAGCGCTTCTAACTTTGGAAATGAGAAATTAACCTTT CAMSASNFGNEKLTF TRAV12-3*01 TRAJ48*01 48.0 1925.0 TGTGCCAGCAGCTTGCCCAGTGGACAGGGGCGGGAGACCCAGTACTTC CASSLPSGQGRETQYF TRBV5-6*01 TRBJ2-5*01 1.0 19.0 CAMSASNFGNEKLTF_CASSLPSGQGRETQYF 1 7046 PGT-178 PGT 0.57 1480 PGT-178 181 6865 3 HomoSapiens PGT LLAGIGTVPI Naive T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*02:01 B2M MHCI -6843 chip0423_58350 6.66 14.18 Chip2 T1D_6 T1D TGTGCCAGCAGCTACGGGGTCGGCTATGGCTACACCTTC CASSYGVGYGYTF TRBV7-2*01 TRBJ1-2*01 22.0 1203.0 _CASSYGVGYGYTF 1 4387 BZLF1-190-197 EBV 0.91 2156 NEG 195 4192 7 EBV BZLF1 RAKFKQLL transitional T cells between effector and memory populations PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-B*08:01 B2M MHCI -6844 chip0423_783139 15.13 9.79 Chip2 T1D_6 T1D TGCATCCTCCCACTTGCTGGTGGTACTAGCTACGGAAAGCTGACATTT CILPLAGGTSYGKLTF TRAV26-2*01 TRAJ52*01 49.0 3352.0 TGTGCCAGCAGCTTGGGACAGGCCTACGAGCAGTACTTC CASSLGQAYEQYF TRBV7-8*01 TRBJ2-7*01 23.0 1344.0 CILPLAGGTSYGKLTF_CASSLGQAYEQYF 308 3185 EBNA3A-193-201 EBV 0.41 1022 NEG 208 2977 12 EBV EBNA3A FLRGRAYGL effector T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-B*08:01 B2M MHCI -6845 chip0423_324545 12.91 7.12 Chip2 T1D_6 T1D TGTGCCAGCAGCTTGGGACAGGCCTACGAGCAGTACTTC CASSLGQAYEQYF TRBV7-8*01 TRBJ2-7*01 18.0 1016.0 _CASSLGQAYEQYF 175 3908 EBNA3A-193-201 EBV 0.75 1022 NEG 191 3717 10 EBV EBNA3A FLRGRAYGL effector memory T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-B*08:01 B2M MHCI -6846 chip0423_502005 14.25 7.75 Chip2 T1D_4 T1D TGCATCGTCAGAGAGGGAGGAGGTGCTGACGGACTCACCTTT CIVREGGGADGLTF TRAV26-1*01 TRAJ45*01 36.0 2062.0 TGTGCCAGCAGCTTAGCGGTCGGAGAAGGGCCCCAGCATTTT CASSLAVGEGPQHF TRBV7-9*01 TRBJ1-5*01 81.0 2762.0 CIVREGGGADGLTF_CASSLAVGEGPQHF 68 4639 BZLF1-190-197 EBV 0.84 2156 BZLF1-190-197 216 4423 10 EBV BZLF1 RAKFKQLL effector memory T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-B*08:01 B2M MHCI -6847 chip0423_465243 7.01 12.41 Chip2 healthy_3 healthy _ 6746 5408 PTPRN-482-490 PTPRN 0.45 10 NEG 181 5227 7 HomoSapiens PTPRN SLAAGVKLL transitional T cells between effector and memory populations PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*02:01 B2M MHCI -6848 chip0423_540677 11.86 12.94 Chip2 T1D_4 T1D TGCAGCGCCACCCGGCCGGGAAACATTCAGTACTTC CSATRPGNIQYF TRBV29-1*01 TRBJ2-4*01 56.0 4738.0 _CSATRPGNIQYF 2 2227 BZLF1-190-197 EBV 0.67 2156 NEG 171 2056 11 EBV BZLF1 RAKFKQLL effector T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-B*08:01 B2M MHCI -6849 chip0423_363831 15.15 11.38 Chip2 T1D_5 T1D TGTGCAGCGGCGGAAACCTCCTACGACAAGGTGATATTT CAAAETSYDKVIF TRAV13-1*01 TRAJ50*01 22.0 1967.0 TGTGCCAGCCAACTAGCGGGAGGCACCGGGGAGCTGTTTTTT CASQLAGGTGELFF TRBV24-1*01 TRBJ2-2*01 1.0 80.0 CAAAETSYDKVIF_CASQLAGGTGELFF 131 4010 BZLF1-190-197 EBV 1.0 2156 NEG 216 3794 12 EBV BZLF1 RAKFKQLL effector T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-B*08:01 B2M MHCI -6850 chip0423_651855 14.6 9.85 Chip2 T1D_5 T1D TGTGCCAGCCAACTAGCGGGAGGCACCGGGGAGCTGTTTTTT CASQLAGGTGELFF TRBV24-1*01 TRBJ2-2*01 25.0 1277.0 _CASQLAGGTGELFF 69 3368 BZLF1-190-197 EBV 0.46 2156 NEG 207 3161 12 EBV BZLF1 RAKFKQLL effector T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-B*08:01 B2M MHCI -6851 chip0423_543367 13.76 7.82 Chip2 T1D_4 T1D TGTGCTGTCAATTCAGGAAACACACCTCTTGTCTTT CAVNSGNTPLVF TRAV1-2*01 TRAJ29*01 19.0 2005.0 TGTGCCAGCAGCCAAGTCAACAACCCGGGGGATGGCTACACCTTC CASSQVNNPGDGYTF TRBV14*01 TRBJ1-2*01 10.0 463.0 CAVNSGNTPLVF_CASSQVNNPGDGYTF 31 3763 EBNA3A-158-166 EBV 0.53 444 NEG 202 3561 10 EBV EBNA3A QAKWRLQTL effector memory T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-B*08:01 B2M MHCI -6852 chip0423_270214 5.93 12.32 Chip2 T1D_6 T1D _ 6746 6000 M1 FLU 0.83 1250 M1 211 5789 7 InfluenzaA M1 GILGFVFTL transitional T cells between effector and memory populations PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*02:01 B2M MHCI -6853 chip0423_190886 14.26 9.99 Chip2 T1D_5 T1D TGTGCAGCAAGTGAAACCTCCTACGACAAGGTGATATTT CAASETSYDKVIF TRAV13-1*01 TRAJ50*01 19.0 1750.0 TGTGCCAGCACCAGTTTGGGGGATGGTAGCGGGAACGAGCAGTTCTTC CASTSLGDGSGNEQFF TRBV7-9*01 TRBJ2-1*01 97.0 5217.0 CAASETSYDKVIF_CASTSLGDGSGNEQFF 3 3107 BZLF1-190-197 EBV 0.42 2156 NEG 202 2905 12 EBV BZLF1 RAKFKQLL effector T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-B*08:01 B2M MHCI -6854 chip0423_170091 8.22 11.25 Chip2 T1D_4 T1D TGTGCCAGCAGCTTAGGAGGGAGAGAGGGGGCCAGTGGGCAGTTCTTC CASSLGGREGASGQFF TRBV7-6*01 TRBJ2-1*01 12.0 791.0 _CASSLGGREGASGQFF 1 6545 EBNA3A-193-201 EBV 0.5 1022 NEG 195 6350 7 EBV EBNA3A FLRGRAYGL transitional T cells between effector and memory populations PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-B*08:01 B2M MHCI -6855 chip0423_583368 7.79 10.98 Chip2 T1D_4 T1D TGTGCAGCAAGCGACCGCCTTCCAGGAGGAAGCTACATACCTACATTT CAASDRLPGGSYIPTF TRAV39*01,TRAV23/DV6*01 TRAJ6*01 2.0 38.0 TGCAGTGCTACTAACCAGTACGACGGACCCGACACTGAAGCTTTCTTT CSATNQYDGPDTEAFF TRBV20-1*01 TRBJ1-1*01 47.0 2054.0 CAASDRLPGGSYIPTF_CSATNQYDGPDTEAFF 21 6291 BZLF1-190-197 EBV 0.62 2156 BZLF1-190-197 217 6074 7 EBV BZLF1 RAKFKQLL transitional T cells between effector and memory populations PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-B*08:01 B2M MHCI -6856 chip0423_199832 15.35 9.3 Chip2 T1D_6 T1D TGCATCCTCCCACTTGCTGGTGGTACTAGCTATGGAAAGCTGACATTT CILPLAGGTSYGKLTF TRAV26-2*01 TRAJ52*01 87.0 2850.0 TGTGCCAGCAGCTTGGGACAGGCCTACGAGCAGTACTTC CASSLGQAYEQYF TRBV7-8*01 TRBJ2-7*01 33.0 1410.0 CILPLAGGTSYGKLTF_CASSLGQAYEQYF 308 3415 EBNA3A-193-201 EBV 0.92 1022 NEG 258 3157 12 EBV EBNA3A FLRGRAYGL effector T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-B*08:01 B2M MHCI -6857 chip0423_152297 8.92 9.18 Chip2 healthy_3 healthy TGTGCCGTGAAGGAGGGAGGAAAGCTTATCTTC CAVKEGGKLIF TRAV8-1*01 TRAJ23*01 38.0 3206.0 CAVKEGGKLIF_ 5 7493 EBV-BRLF1 EBV 0.6 1264 EBV-BRLF1 181 7312 8 EBV BRLF1 YVLDHLIVV effector memory T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*02:01 B2M MHCI -6858 chip0423_814886 11.22 11.62 Chip2 T1D_4 T1D TGTGCAGCAAGTGAGAACTTTGGAAATGAGAAATTAACCTTT CAASENFGNEKLTF TRAV13-1*01 TRAJ48*01 66.0 2462.0 CAASENFGNEKLTF_ 1 2785 BZLF1-190-197 EBV 0.75 2156 NEG 189 2596 9 EBV BZLF1 RAKFKQLL effector memory T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-B*08:01 B2M MHCI -6859 chip0423_810050 11.94 7.48 Chip2 T1D_4 T1D TGTGCTCTAAGGGACATGGAATATGGAAACAAACTGGTCTTT CALRDMEYGNKLVF TRAV16*01 TRAJ47*01 81.0 4106.0 TGTGCCCGCCGCTTACTCGCTAGCGGTGGCCCCAACGAGCAGTACTTC CARRLLASGGPNEQYF TRBV7-3*01 TRBJ2-7*01 9.0 433.0 CALRDMEYGNKLVF_CARRLLASGGPNEQYF 1 5044 BZLF1-190-197 EBV 0.75 2156 NEG 192 4852 10 EBV BZLF1 RAKFKQLL effector memory T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-B*08:01 B2M MHCI -6860 chip0423_752647 -1.06 8.19 Chip2 T1D_6 T1D TGTGCCAGCAGACCCAGACAGGGGGGTTCACCCCTCCACTTT CASRPRQGGSPLHF TRBV28*01 TRBJ1-6*01 19.0 1085.0 _CASRPRQGGSPLHF 1 7447 MART1-ALA MART1 0.55 269 NEG 191 7256 3 HomoSapiens MART1 ALAGIGILTV Naive T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*02:01 B2M MHCI -6861 chip0423_377319 8.02 11.73 Chip2 T1D_4 T1D TGTGCAATGAGAGAGGGAGGAACTGCTGGTGGTACTAGCTATGGAAAGCTGACATTT CAMREGGTAGGTSYGKLTF TRAV14/DV4*01 TRAJ52*01 178.0 4291.0 TGTGCCAGTAGTATGTTCGGGGCGGCCGCTCGTGCTTTCTTT CASSMFGAAARAFF TRBV19*01 TRBJ1-1*01 5.0 317.0 CAMREGGTAGGTSYGKLTF_CASSMFGAAARAFF 1 3717 ZNT8-153-161 ZNT8 0.83 41 NEG 165 3552 7 HomoSapiens ZNT8 VVTGVLVYL transitional T cells between effector and memory populations PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*02:01 B2M MHCI -6862 chip0423_375634 11.88 12.4 Chip2 T1D_4 T1D TGTGCCAGCAGCTTAACGGTTCTGGCAGGTCCAAACACTGAAGCTTTCTTT CASSLTVLAGPNTEAFF TRBV7-3*01 TRBJ1-1*01 16.0 456.0 _CASSLTVLAGPNTEAFF 32 3554 BZLF1-190-197 EBV 0.8 2156 BZLF1-190-197 199 3355 11 EBV BZLF1 RAKFKQLL effector T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-B*08:01 B2M MHCI -6863 chip0423_106635 8.93 7.65 Chip2 tet_neg TGTGCCAGCAGCTTAGCGGTCGGAGAAGGGCCCCAGCATTTT CASSLAVGEGPQHF TRBV7-9*01 TRBJ1-5*01 99.0 4428.0 _CASSLAVGEGPQHF 113 7734 BZLF1-190-197 EBV 0.65 2156 BZLF1-190-197 223 7511 8 EBV BZLF1 RAKFKQLL effector memory T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-B*08:01 B2M MHCI -6864 chip0423_443353 15.25 10.84 Chip2 T1D_5 T1D TGTGCAGCAACGGAAACCTCCTACGACAAGGTGATATTT CAATETSYDKVIF TRAV13-1*01 TRAJ50*01 52.0 3220.0 TGTGCCAGCAGTCCCCCGGGGAGAAATGAAAAACTGTTTTTT CASSPPGRNEKLFF TRBV12-3*01,TRBV12-4*01 TRBJ1-4*01 70.0 1733.0 CAATETSYDKVIF_CASSPPGRNEKLFF 34 3108 BZLF1-190-197 EBV 0.62 2156 NEG 157 2951 12 EBV BZLF1 RAKFKQLL effector T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-B*08:01 B2M MHCI -6865 chip0423_801601 10.51 7.22 Chip2 T1D_4 T1D TGTGCCAGCAGCTCGACAAGGGCGGGCAATCAGCCCCAGCATTTT CASSSTRAGNQPQHF TRBV7-9*01 TRBJ1-5*01 37.0 1309.0 _CASSSTRAGNQPQHF 1 6083 BZLF1-190-197 EBV 0.86 2156 NEG 218 5865 10 EBV BZLF1 RAKFKQLL effector memory T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-B*08:01 B2M MHCI -6866 chip0423_149800 6.23 14.18 Chip2 T1D_4 T1D TGTGCAGCCATAGGCCCGACTGCCAGTAAACTCACCTTT CAAIGPTASKLTF TRAV13-1*01 TRAJ44*01 10.0 480.0 TGTGCCAGCTCGACAGGGTACTATGGCTACACCTTC CASSTGYYGYTF TRBV19*01 TRBJ1-2*01 48.0 3049.0 CAAIGPTASKLTF_CASSTGYYGYTF 1 5055 M1 FLU 0.83 1250 NEG 195 4860 7 InfluenzaA M1 GILGFVFTL transitional T cells between effector and memory populations PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*02:01 B2M MHCI -6867 chip0423_523061 11.23 7.03 Chip2 T1D_6 T1D TGTGCCAGCAGCTTGGGACAGGCCTACGAGCAGTACTTC CASSLGQAYEQYF TRBV7-8*01 TRBJ2-7*01 9.0 625.0 _CASSLGQAYEQYF 175 5129 EBNA3A-193-201 EBV 0.79 1022 EBNA3A-193-201 221 4908 10 EBV EBNA3A FLRGRAYGL effector memory T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-B*08:01 B2M MHCI -6868 chip0423_670903 13.16 11.26 Chip2 T1D_4 T1D TGTGTTCTGCGTGGTTTCTGTACTTGGTGCTGGCGGACTCACCTTT CVLRGFCac??ttGAGGLTF TRAV8-2*01 TRAJ45*01 26.0 1856.0 CVLRGFCac??ttGAGGLTF_ 1 3842 EBNA3A-193-201 EBV 0.79 1022 NEG 187 3655 9 EBV EBNA3A FLRGRAYGL effector memory T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-B*08:01 B2M MHCI -6869 chip0423_177600 5.88 10.14 Chip2 T1D_4 T1D TGTGCTGTCCCAGGAGGAAGCCAAGGAAATCTCATCTTT CAVPGGSQGNLIF TRAV8-3*01 TRAJ42*01 1.0 72.0 TGTGCCAGCAGTTACTCAAGTACAGGGGAGTACTTC CASSYSSTGEYF TRBV6-2*01,TRBV6-3*01 TRBJ2-7*01 40.0 1917.0 CAVPGGSQGNLIF_CASSYSSTGEYF 20 7906 EBV-LMP1-1 EBV 0.62 237 NEG 204 7702 6 EBV LMP1 YLLEMLWRL central memory T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*02:01 B2M MHCI -6870 chip0423_98382 7.38 9.96 Chip2 T1D_5 T1D TGTGCAGCAGCGGAAACCTCCTACGACAAGGTGATATTT CAAAETSYDKVIF TRAV13-1*01 TRAJ50*01 25.0 2016.0 TGTGCCAGCAGCCAATTGGGGGAGGCGAAGGAAGGCACTGAAGCTTTCTTT CASSQLGEAKEGTEAFF TRBV11-1*01 TRBJ1-1*01 7.0 212.0 CAAAETSYDKVIF_CASSQLGEAKEGTEAFF 29 6193 BZLF1-190-197 EBV 0.47 2156 NEG 193 6000 8 EBV BZLF1 RAKFKQLL effector memory T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-B*08:01 B2M MHCI -6871 chip0423_15428 -2.24 7.6 Chip2 T1D_5 T1D TGTGCAACCGCTTCTGGTTCTGCAAGGCAACTGACCTTT CATASGSARQLTF TRAV14/DV4*01 TRAJ22*01 27.0 2016.0 TGTGCCAGCAGAGAGACGGGCCAAGAGACCCAGTACTTC CASRETGQETQYF TRBV27*01 TRBJ2-5*01 46.0 3146.0 CATASGSARQLTF_CASRETGQETQYF 1 8823 PTPRN-HAR-8 PTPRN 0.83 13 PTPRN-HAR-8 162 8661 3 HomoSapiens PTPRN HARIKLKV Naive T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-B*08:01 B2M MHCI -6872 chip0423_210604 5.28 10.12 Chip2 healthy_3 healthy TGTGCTGTTGAAGTCGACAAGCTCATCTTT CAVEVDKLIF TRAV41*01 TRAJ34*01 2.0 79.0 TGTGCCAGCAGCTTGTGGTACAGGGTGGAGACCCAGTACTTC CASSLWYRVETQYF TRBV5-6*01 TRBJ2-5*01 25.0 1164.0 CAVEVDKLIF_CASSLWYRVETQYF 3 5007 NP44-52 FLU 0.93 474 NP44-52 177 4830 6 InfluenzaA NP CTELKLSDY central memory T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*01:01 B2M MHCI -6873 chip0423_105968 -3.24 9.05 Chip2 T1D_5 T1D TGTGCCAGCAGTTGGGGGGCAGGTACTCAAGAGACCCAGTACTTC CASSWGAGTQETQYF TRBV27*01 TRBJ2-5*01 25.0 1204.0 _CASSWGAGTQETQYF 1 4927 G6PC2-NLI-8 IGRP 0.87 32 NEG 153 4774 2 HomoSapiens G6PC2 NLIFKWIL Naive T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-B*08:01 B2M MHCI -6874 chip0423_806843 7.17 10.18 Chip2 T1D_6 T1D _ 6746 7705 EBNA3A-158-166 EBV 0.71 444 NEG 194 7511 7 EBV EBNA3A QAKWRLQTL transitional T cells between effector and memory populations PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-B*08:01 B2M MHCI -6875 chip0423_620010 5.24 10.87 Chip2 healthy_4 healthy TGTGCCAGCAGTCCCTGGACCACGAACACCGGGGAGCTGTTTTTT CASSPWTTNTGELFF TRBV27*01 TRBJ2-2*01 19.0 831.0 _CASSPWTTNTGELFF 4 5724 M1 FLU 1.0 1250 NEG 192 5532 6 InfluenzaA M1 GILGFVFTL central memory T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*02:01 B2M MHCI -6876 chip0423_603609 11.43 10.21 Chip2 T1D_6 T1D TGCATCCTCCCACTTGCTGGTGGTACTAGCTATGGAAAGCTGACATTT CILPLAGGTSYGKLTF TRAV26-2*01 TRAJ52*01 33.0 1242.0 TGTGCCAGCAGCTTGGGACAGGCCTACGAGCAGTACTTC CASSLGQAYEQYF TRBV7-8*01 TRBJ2-7*01 12.0 614.0 CILPLAGGTSYGKLTF_CASSLGQAYEQYF 308 4314 EBNA3A-193-201 EBV 0.77 1022 EBNA3A-193-201 209 4105 9 EBV EBNA3A FLRGRAYGL effector memory T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-B*08:01 B2M MHCI -6877 chip0423_577059 11.06 8.11 Chip2 T1D_5 T1D TGTGCTGTGAGAGACGACTATGGTCAGAATTTTGTCTTT CAVRDDYGQNFVF TRAV3*01 TRAJ26*01 3.0 153.0 TGCGCCAGCAGCCAAGATTCTCACAGCGCCTACGAGCAGTACTTC CASSQDSHSAYEQYF TRBV4-1*01 TRBJ2-7*01 58.0 2439.0 CAVRDDYGQNFVF_CASSQDSHSAYEQYF 2 7594 BZLF1-190-197 EBV 0.73 2156 BZLF1-190-197 191 7403 10 EBV BZLF1 RAKFKQLL effector memory T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-B*08:01 B2M MHCI -6878 chip0423_553059 -0.93 7.42 Chip2 T1D_6 T1D TGCAGTGCCCGGGACAGGGGGCTATATGACTATGGCTACACCTTC CSARDRGLYDYGYTF TRBV20-1*01 TRBJ1-2*01 9.0 601.0 _CSARDRGLYDYGYTF 1 8280 PGT-178 PGT 0.59 1480 PGT-178 194 8086 3 HomoSapiens PGT LLAGIGTVPI Naive T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*02:01 B2M MHCI -6879 chip0423_14501 11.82 6.71 Chip2 T1D_5 T1D TGTGCTGGGCAGGTTGCTGGCAACAACCGTAAGCTGATTTGG CAGQVAGNNRKLIW TRAV17*01 TRAJ38*01 11.0 348.0 TGTGCCAGCAGTTTTTCAGGAAGCGATTCCTACGAGCAGTACTTC CASSFSGSDSYEQYF TRBV12-3*01,TRBV12-4*01 TRBJ2-7*01 17.0 882.0 CAGQVAGNNRKLIW_CASSFSGSDSYEQYF 1 5840 BZLF1-190-197 EBV 0.83 2156 NEG 211 5629 10 EBV BZLF1 RAKFKQLL effector memory T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-B*08:01 B2M MHCI -6880 chip0423_773034 -2.94 8.26 Chip2 healthy_3 healthy TGCATCCTCCCACTTGCTGGTGGTACTAGCTATGGAAAGCTGACATTT CILPLAGGTSYGKLTF TRAV26-2*01 TRAJ52*01 4.0 75.0 TGCAGCGTCGAAGGTGGACAGGGGGAAGGGAGGCAGTACTTC CSVEGGQGEGRQYF TRBV29-1*01 TRBJ2-7*01 70.0 5239.0 CILPLAGGTSYGKLTF_CSVEGGQGEGRQYF 1 6025 PGT-178 PGT 0.61 1480 PGT-178 165 5860 2 HomoSapiens PGT LLAGIGTVPI Naive T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*02:01 B2M MHCI -6881 chip0423_822379 5.81 12.22 Chip2 T1D_6 T1D TGTGCCAGCAGCTCCCCGACGGTGCACTCTGGGGCCAACGTCCTGACTTTC CASSSPTVHSGANVLTF TRBV9*01 TRBJ2-6*01 35.0 2167.0 _CASSSPTVHSGANVLTF 1 5276 ADH-79-88 ADH 0.56 15 NEG 197 5079 7 HomoSapiens ADH RQFGPDWIVA transitional T cells between effector and memory populations PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*02:01 B2M MHCI -6882 chip0423_754667 8.18 11.77 Chip2 T1D_5 T1D TGTGCAGCGGGGGAAACCTCCTACGACAAGGTGATATTT CAAGETSYDKVIF TRAV13-1*01 TRAJ50*01 18.0 1677.0 TGTGCCAGCAGCTTGTTAGGCAGTCAGAACACTGAAGCTTTCTTT CASSLLGSQNTEAFF TRBV7-9*01 TRBJ1-1*01 75.0 2636.0 CAAGETSYDKVIF_CASSLLGSQNTEAFF 11 4120 BZLF1-190-197 EBV 0.67 2156 NEG 192 3928 7 EBV BZLF1 RAKFKQLL transitional T cells between effector and memory populations PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-B*08:01 B2M MHCI -6883 chip0423_68954 10.7 8.72 Chip2 T1D_5 T1D TGTGCCAGCAGCTCCTTAAGCGGGGGGGCAGGAAATGAGCAGTTCTTC CASSSLSGGAGNEQFF TRBV7-9*01 TRBJ2-1*01 30.0 1233.0 _CASSSLSGGAGNEQFF 33 4846 BZLF1-190-197 EBV 0.79 2156 NEG 178 4668 10 EBV BZLF1 RAKFKQLL effector memory T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-B*08:01 B2M MHCI -6884 chip0423_24253 10.07 7.31 Chip2 T1D_5 T1D TGTGCCAGCCAACTAGCGGGAGGCACCGGGGAGCTGTTTTTT CASQLAGGTGELFF TRBV24-1*01 TRBJ2-2*01 24.0 1726.0 _CASQLAGGTGELFF 69 3663 BZLF1-190-197 EBV 0.62 2156 NEG 177 3486 10 EBV BZLF1 RAKFKQLL effector memory T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-B*08:01 B2M MHCI -6885 chip0423_704617 -1.48 9.29 Chip2 T1D_4 T1D TGTGCAATGAGTAGATCTAACTTTGGACATGAGAAATTAACCTTT CAMSRSNFGHEKLTF TRAV12-3*01 TRAJ48*01 99.0 2705.0 CAMSRSNFGHEKLTF_ 1 7426 PGT-178 PGT 0.77 1480 PGT-178 172 7254 3 HomoSapiens PGT LLAGIGTVPI Naive T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*02:01 B2M MHCI -6886 chip0423_221025 4.77 10.16 Chip2 T1D_4 T1D TGTGCTCTCACTACCTATGGTCAGAATTTTGTCTTT CALTTYGQNFVF TRAV38-1*01 TRAJ26*01 2.0 89.0 TGCAGTGCCTCTCGTGTCTCCTACGAGCAGTACTTC CSASRVSYEQYF TRBV20-1*01 TRBJ2-7*01 12.0 649.0 CALTTYGQNFVF_CSASRVSYEQYF 2 3609 EBV-LMP1-1 EBV 1.0 237 NEG 177 3432 6 EBV LMP1 YLLEMLWRL central memory T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*02:01 B2M MHCI -6887 chip0423_846494 -0.88 9.95 Chip2 T1D_6 T1D TGTGCAATGAGAGAGGGAGGCAGAGATGACAAGATCATCTTT CAMREGGRDDKIIF TRAV14/DV4*01 TRAJ30*01 54.0 1897.0 TGTGCCAGCAGCTCGCCCGGGCTGGGGCTCCGACGAGCAGAACTTC CASSSPGct??ggGSDEQNF TRBV7-3*01 TRBJ2-7*01 2.0 204.0 CAMREGGRDDKIIF_CASSSPGct??ggGSDEQNF 1 6094 GFAP-EGH-9 GFAP 0.56 4 NEG 171 5923 3 HomoSapiens GFAP EGHLKRNIV Naive T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-B*08:01 B2M MHCI -6888 chip0423_629486 10.76 9.42 Chip2 T1D_6 T1D TGTGCAGCAAGCAAGATAGAGGAGGAGGTGCTGACGGACTCACCTTT CAASKIEga?GGADGLTF TRAV23/DV6*01 TRAJ45*01 43.0 1597.0 TGTGCCAGCAGCTTGGGACAGGCCTACGAGCAGTACTTC CASSLGQAYEQYF TRBV7-8*01 TRBJ2-7*01 8.0 401.0 CAASKIEga?GGADGLTF_CASSLGQAYEQYF 8 7625 EBNA3A-193-201 EBV 0.94 1022 EBNA3A-193-201 220 7405 9 EBV EBNA3A FLRGRAYGL effector memory T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-B*08:01 B2M MHCI -6889 chip0423_417609 -1.9 9.38 Chip2 T1D_5 T1D TGTGCCGTGAACTCAGGAACCTACAAATACATCTTT CAVNSGTYKYIF TRAV12-2*01 TRAJ40*01 10.0 684.0 TGTGCCAGCAGTATACAATCCTACAATGAGCAGTTCTTC CASSIQSYNEQFF TRBV27*01 TRBJ2-1*01 14.0 503.0 CAVNSGTYKYIF_CASSIQSYNEQFF 1 6811 G6PC2-LTS-10 IGRP 0.91 59 G6PC2-LTS-10 184 6627 3 HomoSapiens G6PC2 LTSLTILQLY Naive T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*01:01 B2M MHCI -6890 chip0423_620858 9.46 8.42 Chip2 healthy_4 healthy TGTGCCAGCAGCCAGACATTTCCGAACACCGGGGAGCTGTTTTTT CASSQTFPNTGELFF TRBV3-1*01 TRBJ2-2*01 32.0 1550.0 _CASSQTFPNTGELFF 12 5247 BZLF1-190-197 EBV 0.81 2156 NEG 190 5057 8 EBV BZLF1 RAKFKQLL effector memory T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-B*08:01 B2M MHCI -6891 chip0423_451936 12.97 6.54 Chip2 T1D_4 T1D TGTGCCAGCTCACCGAGTCTAGGGGAATACAATGAGCAGTTCTTC CASSPSLGEYNEQFF TRBV18*01 TRBJ2-1*01 42.0 1015.0 _CASSPSLGEYNEQFF 1 5343 BZLF1-190-197 EBV 0.59 2156 BZLF1-190-197 234 5109 10 EBV BZLF1 RAKFKQLL effector memory T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-B*08:01 B2M MHCI -6892 chip0423_286071 6.67 11.36 Chip2 T1D_6 T1D TGCGCCAGCAGTGACATTAGGGAGGGGCAGGGTGAAGCTTTCTTT CASSDIREGQGEAFF TRBV10-2*01 TRBJ1-1*01 47.0 1265.0 _CASSDIREGQGEAFF 37 7845 EBNA3A-158-166 EBV 0.6 444 EBNA3A-158-166 181 7664 7 EBV EBNA3A QAKWRLQTL transitional T cells between effector and memory populations PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-B*08:01 B2M MHCI -6893 chip0423_274494 -3.96 8.16 Chip2 healthy_4 healthy TGCGCCAGCAGCTTGGCCCTGCGGGGGCCCCGAGAGACCCAGTACTTC CASSLALRGPRETQYF TRBV5-1*01 TRBJ2-5*01 8.0 283.0 _CASSLALRGPRETQYF 1 5252 PGT-178 PGT 0.7 1480 NEG 180 5072 2 HomoSapiens PGT LLAGIGTVPI Naive T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*02:01 B2M MHCI -6894 chip0423_851989 7.77 8.99 Chip2 T1D_4 T1D TGTGCCTATGGTCAGAATTTTGTCTTT CAYGQNFVF TRAV8-3*01 TRAJ26*01 3.0 315.0 TGTGCCAGCAGCGCAGACAGCGATTATGGCTACACCTTC CASSADSDYGYTF TRBV9*01 TRBJ1-2*01 51.0 3034.0 CAYGQNFVF_CASSADSDYGYTF 8 10152 EBV-LMP1-1 EBV 0.67 237 NEG 190 9962 8 EBV LMP1 YLLEMLWRL effector memory T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*02:01 B2M MHCI -6895 chip0423_555452 13.71 10.66 Chip2 T1D_5 T1D TGTGCAGCGGCGGAAACCTCCTACGACAAGGTGATATTT CAAAETSYDKVIF TRAV13-1*01 TRAJ50*01 30.0 2505.0 TGTGCCAGCCAACTAGCGGGAGGCACCGGGGAGCTGTTTTTT CASQLAGGTGELFF TRBV24-1*01 TRBJ2-2*01 30.0 1540.0 CAAAETSYDKVIF_CASQLAGGTGELFF 131 2768 BZLF1-190-197 EBV 0.71 2156 NEG 183 2585 9 EBV BZLF1 RAKFKQLL effector memory T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-B*08:01 B2M MHCI -6896 chip0423_649137 5.78 9.66 Chip2 T1D_6 T1D TGCGCCAGCAGCCCCCAATGGGGGGGCCTCGCCGGGGAGCTGTTTTTT CASSPQWGGLAGELFF TRBV4-1*01 TRBJ2-2*01 38.0 2174.0 _CASSPQWGGLAGELFF 1 10847 LMP2A-CPL EBV 0.67 44 LMP2A-CPL 173 10674 6 EBV LMP2A CPLSKILL central memory T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-B*08:01 B2M MHCI -6897 chip0423_530943 11.03 11.89 Chip2 T1D_4 T1D TGTGCCAGCAGCCCAGGACTAGCGGGGGCCGCTCAGACCCAGTACTTC CASSPGLAGAAQTQYF TRBV3-1*01 TRBJ2-5*01 9.0 546.0 _CASSPGLAGAAQTQYF 1 3560 EBV-BRLF1 EBV 0.82 1264 NEG 187 3373 9 EBV BRLF1 YVLDHLIVV effector memory T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*02:01 B2M MHCI -6898 chip0423_269528 15.37 10.48 Chip2 T1D_4 T1D TGTGCCGCCTCTGAAACCTCCTACGACAAGGTGATATTT CAASETSYDKVIF TRAV13-1*01 TRAJ50*01 30.0 4236.0 TGTGCCGCTACTAACACCGTCAAGCTCATCTTT CAATNTVKLIF TRAV27*01 TRAJ34*01 29.0 2826.0 0.44 TGTGCCAGCAGCTCGACAGGGGGCGGGGATCAGCCCCAGCATTTT CASSSTGGGDQPQHF TRBV7-9*01 TRBJ1-5*01 49.0 1261.0 CAASETSYDKVIF_CASSSTGGGDQPQHF 9 3729 BZLF1-190-197 EBV 0.44 2156 NEG 215 3514 12 EBV BZLF1 RAKFKQLL effector T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-B*08:01 B2M MHCI -6899 chip0423_182565 10.99 10.33 Chip2 T1D_4 T1D TGTGGAGCAGACGCAACCTCAGGAACCTACAAATACATCTTT CGADATSGTYKYIF TRAV34*01 TRAJ40*01 45.0 2170.0 TGCAGCGTGGGGTCGGGGGAGGGCTACGAGCAGTACTTC CSVGSGEGYEQYF TRBV29-1*01 TRBJ2-7*01 26.0 2024.0 CGADATSGTYKYIF_CSVGSGEGYEQYF 6 6235 BZLF1-190-197 EBV 0.88 2156 NEG 188 6047 9 EBV BZLF1 RAKFKQLL effector memory T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-B*08:01 B2M MHCI -6900 chip0423_733134 14.59 10.77 Chip2 T1D_5 T1D TGTGCAGCTCAGGAAACCTCCTACGACAAGGTGATATTT CAAQETSYDKVIF TRAV13-1*01 TRAJ50*01 24.0 2015.0 TGTGCCAGCACCCAGGTAGACAGACCCAACTATGGCTACACCTTC CASTQVDRPNYGYTF TRBV7-9*01 TRBJ1-2*01 40.0 1923.0 CAAQETSYDKVIF_CASTQVDRPNYGYTF 17 2932 BZLF1-190-197 EBV 0.45 2156 NEG 167 2765 12 EBV BZLF1 RAKFKQLL effector T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-B*08:01 B2M MHCI -6901 chip0423_712986 6.05 12.38 Chip2 T1D_6 T1D TGTGCCGGCAGTAAAGACACTTCGATGAATACGCAGTATTTT CAGSKDTSMNTQYF TRBV28*01 TRBJ2-3*01 9.0 607.0 _CAGSKDTSMNTQYF 1 5512 EBNA3A-158-166 EBV 0.42 444 EBNA3A-158-166 187 5325 7 EBV EBNA3A QAKWRLQTL transitional T cells between effector and memory populations PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-B*08:01 B2M MHCI -6902 chip0423_369435 9.91 9.98 Chip2 T1D_4 T1D TGCATCGTCAGAGAGGGAGGAGGTGCTGACGGACTCACCTTT CIVREGGGADGLTF TRAV26-1*01 TRAJ45*01 37.0 2057.0 CIVREGGGADGLTF_ 9 5616 BZLF1-190-197 EBV 0.98 2156 BZLF1-190-197 177 5439 9 EBV BZLF1 RAKFKQLL effector memory T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-B*08:01 B2M MHCI -6903 chip0423_57238 10.92 7.11 Chip2 T1D_6 T1D _ 6746 8304 EBNA3A-158-166 EBV 0.92 444 NEG 171 8133 6 EBV EBNA3A QAKWRLQTL central memory T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-B*08:01 B2M MHCI -6904 chip0423_597270 14.32 9.37 Chip2 T1D_5 T1D TGTGCCAGCCAACTAGCGGGAGGCACCGGGGAGCTGTTTTTT CASQLAGGTGELFF TRBV24-1*01 TRBJ2-2*01 87.0 5375.0 _CASQLAGGTGELFF 69 5617 BZLF1-190-197 EBV 0.89 2156 NEG 173 5444 12 EBV BZLF1 RAKFKQLL effector T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-B*08:01 B2M MHCI -6905 chip0423_150683 10.89 7.33 Chip2 T1D_4 T1D TGCATCGTCAGAGAGGGAGGAGGTGCTGACGGACTCACCTTT CIVREGGGADGLTF TRAV26-1*01 TRAJ45*01 77.0 4658.0 TGTGCCAGCAGCTTAGCGGTCGGAGAAGGGCCCCAGCATTTT CASSLAVGEGPQHF TRBV7-9*01 TRBJ1-5*01 30.0 954.0 CIVREGGGADGLTF_CASSLAVGEGPQHF 68 4913 BZLF1-190-197 EBV 0.74 2156 BZLF1-190-197 229 4684 10 EBV BZLF1 RAKFKQLL effector memory T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-B*08:01 B2M MHCI -6906 chip0423_873654 12.39 6.29 Chip2 T1D_5 T1D TGTGCAGCAAGTGAAACCTCCTACGACAAGGTGATATTT CAASETSYDKVIF TRAV13-1*01 TRAJ50*01 23.0 2017.0 TGTGCCAGCAGCGAACTAGGGGAGGGTGGAAACACCATATATTTT CASSELGEGGNTIYF TRBV7-9*01 TRBJ1-3*01 77.0 1880.0 CAASETSYDKVIF_CASSELGEGGNTIYF 1 6115 BZLF1-190-197 EBV 0.7 2156 BZLF1-190-197 212 5903 10 EBV BZLF1 RAKFKQLL effector memory T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-B*08:01 B2M MHCI -6907 chip0423_476607 10.85 7.71 Chip2 T1D_4 T1D TGCAGCGTTGGGGCTGGAGGAACTAATGAAAAACTGTTTTTT CSVGAGGTNEKLFF TRBV29-1*01 TRBJ1-4*01 118.0 6347.0 _CSVGAGGTNEKLFF 51 6268 EBV-BLMF1 EBV 0.57 2531 NEG 187 6081 10 EBV BLMF1 GLCTLVAML effector memory T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*02:01 B2M MHCI -6908 chip0423_470851 11.82 7.08 Chip2 T1D_6 T1D TGCGCCAGCAGTGACATTAGGGAGGGGCAGGGTGAAGCTTTCTTT CASSDIREGQGEAFF TRBV10-2*01 TRBJ1-1*01 31.0 1611.0 _CASSDIREGQGEAFF 37 8001 EBNA3A-158-166 EBV 1.0 444 NEG 209 7792 10 EBV EBNA3A QAKWRLQTL effector memory T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-B*08:01 B2M MHCI -6909 chip0423_850957 -0.42 9.45 Chip2 T1D_6 T1D TGTGCCGTGAGTCAGAATAACAATGCCAGACTCATGTTT CAVSQNNNARLMF TRAV8-1*01 TRAJ31*01 24.0 1494.0 TGTGCAATGAGCGCATATGCAGGCAAATCAACCTTT CAMSAYAGKSTF TRAV12-3*01 TRAJ27*01 22.0 2161.0 0.41 TGTGCCAGCAGCGACTCCGAGAAGGGCTACACCTTC CASSDSEKGYTF TRBV3-1*01 TRBJ1-2*01 6.0 206.0 CAVSQNNNARLMF_CASSDSEKGYTF 1 7191 ZNT8-115-123 ZNT8 0.64 74 NEG 175 7016 3 HomoSapiens ZNT8 LLSLFSLWL Naive T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*02:01 B2M MHCI -6910 chip0423_26098 -1.37 7.93 Chip2 T1D_6 T1D _ 6746 7546 EBNA3A-158-166 EBV 0.9 444 EBNA3A-158-166 181 7365 3 EBV EBNA3A QAKWRLQTL Naive T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-B*08:01 B2M MHCI -6911 chip0423_536101 15.01 10.08 Chip2 T1D_5 T1D TGTGCAGCAAGTGAAACCTCCTACGACAAGGTGATATTT CAASETSYDKVIF TRAV13-1*01 TRAJ50*01 22.0 2044.0 TGTGCCACACAGGGCCTAGGCCCTGAAGCTTTCTTT CATQGLGPEAFF TRBV25-1*01 TRBJ1-1*01 43.0 2209.0 CAASETSYDKVIF_CATQGLGPEAFF 1 3065 BZLF1-190-197 EBV 0.54 2156 NEG 197 2868 12 EBV BZLF1 RAKFKQLL effector T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-B*08:01 B2M MHCI -6912 chip0423_503198 15.01 8.84 Chip2 T1D_4 T1D TCCATCGTCAGAGAAGGAGGGGGTGCTGCCGGACTCACCTTT SIVREGGGAAGLTF TRAV26-1*01 TRAJ45*01 10.0 525.0 TGTGCCAGCAGCTTAGCGGTCGGAGAAGGGCCCCAGCATTTT CASSLAVGEGPQHF TRBV7-9*01 TRBJ1-5*01 23.0 955.0 SIVREGGGAAGLTF_CASSLAVGEGPQHF 1 3202 BZLF1-190-197 EBV 0.83 2156 BZLF1-190-197 224 2978 12 EBV BZLF1 RAKFKQLL effector T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-B*08:01 B2M MHCI -6913 chip0423_230570 12.42 10.45 Chip2 T1D_6 T1D TGCAGCGCCGGCAGGGACGGGACTAATGAAAAACTGTTTTTT CSAGRDGTNEKLFF TRBV29-1*01 TRBJ1-4*01 54.0 3174.0 _CSAGRDGTNEKLFF 159 5122 EBV-BLMF1 EBV 0.46 2531 NEG 192 4930 9 EBV BLMF1 GLCTLVAML effector memory T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*02:01 B2M MHCI -6914 chip0423_861325 15.01 12.14 Chip2 T1D_5 T1D TGTGCAGCGGGGGAAACCTCCTACGACAAGGTGATATTT CAAGETSYDKVIF TRAV13-1*01 TRAJ50*01 43.0 2657.0 TGTGCCAGCAGGTTACTAGGGCAGCCCCAGCATTTT CASRLLGQPQHF TRBV28*01 TRBJ1-5*01 33.0 1982.0 CAAGETSYDKVIF_CASRLLGQPQHF 1 1638 BZLF1-190-197 EBV 0.86 2156 NEG 180 1458 12 EBV BZLF1 RAKFKQLL effector T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-B*08:01 B2M MHCI -6915 chip0423_733556 -1.05 7.72 Chip2 T1D_6 T1D TGTGCCAGCAGCTCTACCGGGGAGCTGTTTTTT CASSSTGELFF TRBV13*01 TRBJ2-2*01 12.0 862.0 _CASSSTGELFF 1 8238 PTPRN-797-805 PTPRN 0.63 12 PTPRN-797-805 188 8050 3 HomoSapiens PTPRN MVWESGCTV Naive T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*02:01 B2M MHCI -6916 chip0423_388190 12.04 10.82 Chip2 T1D_4 T1D TGTGCTGTCAATTCAGGAAACACACCTCTTGTCTTT CAVNSGNTPLVF TRAV1-2*01 TRAJ29*01 33.0 3177.0 TGTGCCAGCAGCCAAGTCAACAACCCGGGGGATGGCTACACCTTC CASSQVNNPGDGYTF TRBV14*01 TRBJ1-2*01 19.0 563.0 CAVNSGNTPLVF_CASSQVNNPGDGYTF 31 4685 EBNA3A-158-166 EBV 0.63 444 EBNA3A-158-166 184 4501 9 EBV EBNA3A QAKWRLQTL effector memory T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-B*08:01 B2M MHCI -6917 chip0423_225258 9.53 10.5 Chip2 T1D_4 T1D TGTGCTGTGCAAGCCACTATCCTGGCGGCTTCGCTACTCCCTTT CAVQATIc?tGGFATPF TRAV20*01 TRAJ9*01 4.0 178.0 TGCGCCAGCAGCTTGGAGCTGGGGCTTCCCTACGAGCAGTACTTC CASSLELGLPYEQYF TRBV5-1*01 TRBJ2-7*01 21.0 1509.0 CAVQATIc?tGGFATPF_CASSLELGLPYEQYF 1 7229 EBNA3A-158-166 EBV 0.48 444 NEG 219 7010 9 EBV EBNA3A QAKWRLQTL effector memory T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-B*08:01 B2M MHCI -6918 chip0423_91855 -1.8 11.11 Chip2 T1D_4 T1D TGTGTGCAGGCACTAACTAACTTTGGTTATGATGGTTTTCCCTTC CVQALTNFGYDGFPF TRAV12-1*01 TRAJ48*01 2.0 7.0 TGCAGTGCTAGAGATCTCGCCAGTAGCTCTGGAAACACCATATATTTT CSARDLASSSGNTIYF TRBV20-1*01 TRBJ1-3*01 35.0 1189.0 CVQALTNFGYDGFPF_CSARDLASSSGNTIYF 1 5843 PGT-178 PGT 0.76 1480 PGT-178 171 5672 3 HomoSapiens PGT LLAGIGTVPI Naive T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*02:01 B2M MHCI -6919 chip0423_34901 9.16 7.63 Chip2 T1D_4 T1D TGTGCTGTCAATTCAGGAAACACACCTCTTGTCTTT CAVNSGNTPLVF TRAV1-2*01 TRAJ29*01 5.0 167.0 TGTGCCGGCAGCCAAGTCAACAACCCGGGGGATGGCTACACCTTC CAGSQVNNPGDGYTF TRBV14*01 TRBJ1-2*01 8.0 250.0 CAVNSGNTPLVF_CAGSQVNNPGDGYTF 1 6505 EBNA3A-158-166 EBV 0.85 444 EBNA3A-158-166 238 6267 8 EBV EBNA3A QAKWRLQTL effector memory T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-B*08:01 B2M MHCI -6920 chip0423_749369 10.28 10.14 Chip2 T1D_4 T1D TGCATCGTCAGAGAGGGAGGAGGTGCTGACGGACTCACCTTT CIVREGGGADGLTF TRAV26-1*01 TRAJ45*01 9.0 566.0 TGTGCCAGCAGCTTAGCGGTCGGAGAAGGGCCCCAGCATTTT CASSLAVGEGPQHF TRBV7-9*01 TRBJ1-5*01 39.0 1447.0 CIVREGGGADGLTF_CASSLAVGEGPQHF 68 4352 BZLF1-190-197 EBV 0.9 2156 BZLF1-190-197 188 4164 9 EBV BZLF1 RAKFKQLL effector memory T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-B*08:01 B2M MHCI -6921 chip0423_506763 7.51 12.26 Chip2 T1D_6 T1D TGTGCCTCCCAAGGAGGAAGCCAAGGAAATCTCATCTTT CASQGGSQGNLIF TRAV20*01 TRAJ42*01 31.0 2017.0 TGTGCCAGCAGCTTAGGAGGACAGACAGAGACCCAGTACTTC CASSLGGQTETQYF TRBV13*01 TRBJ2-5*01 16.0 894.0 CASQGGSQGNLIF_CASSLGGQTETQYF 13 4785 ROTA-VP6 ROTA 0.6 47 NEG 183 4602 7 RotavirusA VP6 TLLANVTAV transitional T cells between effector and memory populations PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*02:01 B2M MHCI -6922 chip0423_629341 13.41 10.75 Chip2 T1D_5 T1D _ 6746 3653 BZLF1-190-197 EBV 0.8 2156 NEG 188 3465 9 EBV BZLF1 RAKFKQLL effector memory T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-B*08:01 B2M MHCI -6923 chip0423_378169 11.36 7.57 Chip2 T1D_4 T1D TGCATCCTGCCATTGGAGGGTGGTACTAGCTATGGAAAGCTGACATTT CILPLEGGTSYGKLTF TRAV26-2*01 TRAJ52*01 1.0 37.0 TGTGCTCTGATTTTTTTCTGGTGGCTACAATAAGCTGATTTTT CALIFFW??tGYNKLIF TRAV19*01 TRAJ4*01 4.0 211.0 0.8 TGTGCCAGCAGCTCGGGACAAGCCTACGAGCAGTACTTC CASSSGQAYEQYF TRBV7-8*01 TRBJ2-7*01 2.0 99.0 CILPLEGGTSYGKLTF_CASSSGQAYEQYF 2 4606 EBNA3A-193-201 EBV 0.57 1022 NEG 214 4392 10 EBV EBNA3A FLRGRAYGL effector memory T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-B*08:01 B2M MHCI -6924 chip0423_293997 11.96 10.43 Chip2 T1D_5 T1D TGTGCAGCAGCGGAAACCTCCTACGACAAGGTGATATTT CAAAETSYDKVIF TRAV13-1*01 TRAJ50*01 19.0 1535.0 TGTGCCAGCAGCCAATTGGGGGAGGCGAAGGAAGGCACTGAAGCTTTCTTT CASSQLGEAKEGTEAFF TRBV11-1*01 TRBJ1-1*01 23.0 493.0 CAAAETSYDKVIF_CASSQLGEAKEGTEAFF 29 3563 BZLF1-190-197 EBV 0.5 2156 NEG 183 3380 9 EBV BZLF1 RAKFKQLL effector memory T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-B*08:01 B2M MHCI -6925 chip0423_13211 13.25 10.79 Chip2 T1D_5 T1D TGTGCTCTTTGTGACAGAGGCTCAACCCTGGGGAGGCTATACTTT CALCDRGSTLGRLYF TRAV19*01 TRAJ18*01 36.0 2013.0 TGTGCCAGCAGCTTAGGACGTGAAATCGGGCCCATCGAGCAGTTCTTC CASSLGREIGPIEQFF TRBV7-8*01 TRBJ2-1*01 23.0 836.0 CALCDRGSTLGRLYF_CASSLGREIGPIEQFF 4 3997 BZLF1-190-197 EBV 0.58 2156 NEG 198 3799 9 EBV BZLF1 RAKFKQLL effector memory T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-B*08:01 B2M MHCI -6926 chip0423_708381 9.57 10.49 Chip2 T1D_4 T1D TGTGCAGGCCCATCATGGACACGGGCAGGAGAGCCCTTACTTTT CAGPSWTc?gGRRALTF TRAV25*01 TRAJ5*01 8.0 391.0 TGTGCCAGCAGCCCGGGACCCAACACTGAAGCTTTCTTT CASSPGPNTEAFF TRBV4-2*01 TRBJ1-1*01 46.0 1811.0 CAGPSWTc?gGRRALTF_CASSPGPNTEAFF 1 5899 BZLF1-190-197 EBV 0.53 2156 NEG 210 5689 9 EBV BZLF1 RAKFKQLL effector memory T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-B*08:01 B2M MHCI -6927 chip0423_586889 9.87 9.96 Chip2 T1D_6 T1D TGTGCAGCAACCCTATATGACAAGATCATCTTT CAATLYDKIIF TRAV29/DV5*01 TRAJ30*01 1.0 47.0 TGCAGCGCCGGCAGGGACGGGACTAATGAAAAACTGTTTTTT CSAGRDGTNEKLFF TRBV29-1*01 TRBJ1-4*01 79.0 2857.0 CAATLYDKIIF_CSAGRDGTNEKLFF 1 4867 EBV-BLMF1 EBV 0.88 2531 NEG 201 4666 9 EBV BLMF1 GLCTLVAML effector memory T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*02:01 B2M MHCI -6928 chip0423_357139 15.31 9.01 Chip2 T1D_5 T1D TGTGCCAGCTCACCACCGGACAGGTCTGACAATTCACCCCTCCACTTT CASSPPDRSDNSPLHF TRBV18*01 TRBJ1-6*01 76.0 1999.0 _CASSPPDRSDNSPLHF 1 3556 BZLF1-190-197 EBV 0.55 2156 NEG 203 3353 12 EBV BZLF1 RAKFKQLL effector T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-B*08:01 B2M MHCI -6929 chip0423_792764 -0.53 7.32 Chip2 T1D_5 T1D TGCCTCGTGGGTGACGAGACTGGTGGCTACAATAAGCTGGTTTTT CLVGDETGGYNKLVF TRAV4*01 TRAJ4*01 51.0 1981.0 TGTGCCAGCTCCAATCGGGCTGATCGCAATCAGCCCCAGCATTTT CASSNRADRNQPQHF TRBV13*01 TRBJ1-5*01 53.0 2324.0 CLVGDETGGYNKLVF_CASSNRADRNQPQHF 1 8406 EBNA3A-158-166 EBV 0.71 444 EBNA3A-158-166 208 8198 3 EBV EBNA3A QAKWRLQTL Naive T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-B*08:01 B2M MHCI -6930 chip0423_13565 -0.72 8.89 Chip2 T1D_6 T1D TGTGCTGTGAGAGACACTGGAGGCTTCAAAACTATCTTT CAVRDTGGFKTIF TRAV3*01 TRAJ9*01 39.0 2041.0 TGTGCCAGCAGTCCGAGCTCCTACAATGAGCAGTTCTTC CASSPSSYNEQFF TRBV27*01 TRBJ2-1*01 75.0 5248.0 CAVRDTGGFKTIF_CASSPSSYNEQFF 1 7964 GAD65-141-149 GAD65 0.86 9 NEG 165 7799 4 HomoSapiens GAD65 LLQEYNWEL Naive T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*02:01 B2M MHCI -6931 chip0423_229018 0.44 8.65 Chip2 T1D_6 T1D TGTGCCGTGGGGGAAGACATGCGCTTT CAVGEDMRF TRAV12-2*01 TRAJ43*01 1.0 162.0 TGTGCCAGCAGCTCCCCGGACGACCCGAACACTGAAGCTTTCCTT CASSSPDDPNTEAFL TRBV7-9*01 TRBJ1-1*01 72.0 3276.0 CAVGEDMRF_CASSSPDDPNTEAFL 1 10214 PGT-178 PGT 0.64 1480 PGT-178 191 10023 4 HomoSapiens PGT LLAGIGTVPI Naive T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*02:01 B2M MHCI -6932 chip0423_725878 -3.36 12.21 Chip2 T1D_6 T1D TGTGCAGCAAAGGGCTTT CAAKGF TRAV13-1*01 TRAJ37*01,TRAJ34*01 8.0 37.0 TGCGCCAGCAGCCAAGTTCAAGTAGTCGACTATGGCTACACCTTC CASSQVQVVDYGYTF TRBV4-1*01 TRBJ1-2*01 19.0 696.0 CAAKGF_CASSQVQVVDYGYTF 1 5456 NP225-233 FLU 0.73 23 NP225-233 174 5282 1 InfluenzaA NP ILKGKFQTA Naive T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-B*08:01 B2M MHCI -6933 chip0423_646575 15.56 12.22 Chip2 T1D_5 T1D TGTGCAATGAGGGCCATTGAGGGGGCAAACAACCTCTTCTTT CAMRAIEGANNLFF TRAV14/DV4*01 TRAJ36*01 41.0 1996.0 CAMRAIEGANNLFF_ 17 2466 BZLF1-190-197 EBV 0.8 2156 NEG 194 2272 12 EBV BZLF1 RAKFKQLL effector T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-B*08:01 B2M MHCI -6934 chip0423_357745 -3.29 8.55 Chip2 T1D_4 T1D TGTGCCGTGTCTCCGGGGTACAGCAGTGCTTCCAAGATAATCTTT CAVSPGYSSASKIIF TRAV12-2*01 TRAJ3*01 44.0 1973.0 TGTGCCAGCAGCTTGGTCACCGGGGAGCTGTTTTTT CASSLVTGELFF TRBV5-4*01 TRBJ2-2*01 50.0 4324.0 CAVSPGYSSASKIIF_CASSLVTGELFF 1 6717 INS-MAL-8 INS 0.44 38 NEG 180 6537 2 HomoSapiens INS MALWMRLL Naive T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-B*08:01 B2M MHCI -6935 chip0423_243220 11.12 10.91 Chip2 T1D_4 T1D TGTGCTTACGGTAACCAGTTCTATTTT CAYGNQFYF TRAV16*01 TRAJ49*01 3.0 193.0 TGTGCCAGCAGCCCACTTGGACAGAGGAACACCGGGGAGCTGTTTTTT CASSPLGQRNTGELFF TRBV11-2*01 TRBJ2-2*01 6.0 168.0 CAYGNQFYF_CASSPLGQRNTGELFF 1 4838 BZLF1-190-197 EBV 0.87 2156 BZLF1-190-197 175 4663 9 EBV BZLF1 RAKFKQLL effector memory T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-B*08:01 B2M MHCI -6936 chip0423_27387 14.93 9.43 Chip2 T1D_4 T1D TGCATCGTCAGAGAGGGAGGAGGTGCTGACGGACTCACCTTT CIVREGGGADGLTF TRAV26-1*01 TRAJ45*01 15.0 844.0 TGTGCCAGCAGCTTAGCGGTCGGAGAAGGGCCCCAGCATTTT CASSLAVGEGPQHF TRBV7-9*01 TRBJ1-5*01 44.0 1888.0 CIVREGGGADGLTF_CASSLAVGEGPQHF 68 3722 BZLF1-190-197 EBV 0.86 2156 BZLF1-190-197 191 3531 12 EBV BZLF1 RAKFKQLL effector T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-B*08:01 B2M MHCI -6937 chip0423_565969 8.59 10.0 Chip2 T1D_4 T1D TGCAGCGTTTCGGGAGACCCCTCGGTGGATGAGCAGTTCTTC CSVSGDPSVDEQFF TRBV29-1*01 TRBJ2-1*01 55.0 5490.0 _CSVSGDPSVDEQFF 1 6030 EBV-BRLF1 EBV 0.74 1264 EBV-BRLF1 188 5842 8 EBV BRLF1 YVLDHLIVV effector memory T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*02:01 B2M MHCI -6938 chip0423_225254 10.93 10.16 Chip2 T1D_5 T1D TGTGCAATGAGGGCCATTGAGGGGGCAAACAACCTCTTCTTT CAMRAIEGANNLFF TRAV14/DV4*01 TRAJ36*01 32.0 1623.0 TGCGCCAGCAGCCTCGGTTCGGGGGGCCGTGGCGAGCAGTACTTC CASSLGSGGRGEQYF TRBV4-1*01 TRBJ2-7*01 20.0 1340.0 CAMRAIEGANNLFF_CASSLGSGGRGEQYF 1 4220 BZLF1-190-197 EBV 0.71 2156 NEG 181 4039 9 EBV BZLF1 RAKFKQLL effector memory T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-B*08:01 B2M MHCI -6939 chip0423_159618 12.71 11.72 Chip2 T1D_4 T1D TGTGCTGTGACGTCCCTTTACTCTGGGGCTGGGAGTTACCAACTCACTTTC CAVTSLYSGAGSYQLTF TRAV3*01 TRAJ28*01 59.0 907.0 TGTGCCAGCAGTTTAACGGGGCCCATACCCAGCACAGATACGCAGTATTTT CASSLTGPIPSTDTQYF TRBV27*01 TRBJ2-3*01 44.0 1144.0 CAVTSLYSGAGSYQLTF_CASSLTGPIPSTDTQYF 2 3383 EBNA3A-158-166 EBV 0.58 444 NEG 225 3158 9 EBV EBNA3A QAKWRLQTL effector memory T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-B*08:01 B2M MHCI -6940 chip0423_244698 15.39 12.57 Chip2 T1D_5 T1D TGTGCCAGCTCCCAGTTGGGGGGGGTTTACAATGAGCAGTTCTTC CASSQLGGVYNEQFF TRBV7-9*01 TRBJ2-1*01 38.0 2209.0 _CASSQLGGVYNEQFF 13 1900 BZLF1-190-197 EBV 0.94 2156 BZLF1-190-197 214 1686 12 EBV BZLF1 RAKFKQLL effector T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-B*08:01 B2M MHCI -6941 chip0423_198054 15.26 9.77 Chip2 T1D_6 T1D _ 6746 3408 EBNA3A-193-201 EBV 0.93 1022 NEG 190 3218 12 EBV EBNA3A FLRGRAYGL effector T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-B*08:01 B2M MHCI -6942 chip0423_394598 16.14 10.73 Chip2 T1D_5 T1D TGTGCCAGCAGCGCCTTGGGGCAGACACACACTGAAGCTTTCTTT CASSALGQTHTEAFF TRAV36/DV7*01 TRAJ40*01 5.0 20.0 TGTGCCAGCAGCGCCTTGGGGCAGACACACACTGAAGCTTTCTTT CASSALGQTHTEAFF TRBV7-9*01 TRBJ1-1*01 99.0 4280.0 CASSALGQTHTEAFF_CASSALGQTHTEAFF 1 2132 BZLF1-190-197 EBV 0.85 2156 NEG 174 1958 12 EBV BZLF1 RAKFKQLL effector T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-B*08:01 B2M MHCI -6943 chip0423_315119 9.89 7.82 Chip2 T1D_4 T1D TGTGCTGTGAGTGATGGAGAAGGAGCCCAGAAGCTGGTATTT CAVSDGEGAQKLVF TRAV8-6*01 TRAJ54*01 2.0 26.0 TGTGCCAGCAGCTTAACGGTTCTGGCAGGTCCAAACACTGAAGCTTTCTTT CASSLTVLAGPNTEAFF TRBV7-3*01 TRBJ1-1*01 13.0 622.0 CAVSDGEGAQKLVF_CASSLTVLAGPNTEAFF 44 6952 BZLF1-190-197 EBV 0.97 2156 BZLF1-190-197 211 6741 10 EBV BZLF1 RAKFKQLL effector memory T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-B*08:01 B2M MHCI -6944 chip0423_256485 15.12 8.57 Chip2 T1D_5 T1D TGTGCCGTTCGCTCCCTAGGGGGGTACGCACTTTTTTTCTTT CAVRSLGGYALFFF TRAV12-2*01 TRAJ29*01 7.0 380.0 TGTGCTAGTGGTCCGGACATATCCTACTCCTACGAGCAGTACTTC CASGPDISYSYEQYF TRBV12-5*01 TRBJ2-7*01 17.0 633.0 CAVRSLGGYALFFF_CASGPDISYSYEQYF 1 3722 BZLF1-190-197 EBV 1.0 2156 BZLF1-190-197 191 3531 12 EBV BZLF1 RAKFKQLL effector T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-B*08:01 B2M MHCI -6945 chip0423_576397 6.69 11.17 Chip2 T1D_6 T1D TGCATCCTCCCACTTGCTGGTGGTCCTGGCTATGGAAAGCTGACATTT CILPLAGGPGYGKLTF TRAV26-2*01 TRAJ52*01 10.0 233.0 TGTGCCAGCACCCTACCCGGGTCTAGCGGACAGCCCCAGCATTTT CASTLPGSSGQPQHF TRBV28*01 TRBJ1-5*01 3.0 56.0 CILPLAGGPGYGKLTF_CASTLPGSSGQPQHF 1 8102 EBNA3A-193-201 EBV 0.67 1022 EBNA3A-193-201 190 7912 7 EBV EBNA3A FLRGRAYGL transitional T cells between effector and memory populations PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-B*08:01 B2M MHCI -6946 chip0423_795447 6.16 10.29 Chip2 T1D_6 T1D _ 6746 8548 EBNA3A-158-166 EBV 0.8 444 NEG 202 8346 6 EBV EBNA3A QAKWRLQTL central memory T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-B*08:01 B2M MHCI -6947 chip0423_646520 9.7 9.51 Chip2 T1D_6 T1D TGCAGCGCCGGCAGGGACGGGACTAATGAAAAACTGTTTTTT CSAGRDGTNEKLFF TRBV29-1*01 TRBJ1-4*01 108.0 5698.0 _CSAGRDGTNEKLFF 159 5826 EBV-BLMF1 EBV 0.5 2531 NEG 201 5625 8 EBV BLMF1 GLCTLVAML effector memory T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*02:01 B2M MHCI -6948 chip0423_347728 8.53 8.74 Chip2 T1D_5 T1D TGTGCAATGAGGGCCATTGAGGGGGCAAACAACCTCTTCTTT CAMRAIEGANNLFF TRAV14/DV4*01 TRAJ36*01 30.0 1543.0 CAMRAIEGANNLFF_ 17 7310 BZLF1-190-197 EBV 0.53 2156 BZLF1-190-197 196 7114 8 EBV BZLF1 RAKFKQLL effector memory T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-B*08:01 B2M MHCI -6949 chip0423_177685 -0.58 9.12 Chip2 T1D_6 T1D TGTGCAATGAGCATATCTAACTTTGGAAATGAGAAATTAACCTTT CAMSISNFGNEKLTF TRAV12-3*01 TRAJ48*01 32.0 932.0 TGTGCCAGCAGGATGGACAGGGCTTACGAGCAGTACTTC CASRMDRAYEQYF TRBV6-1*01 TRBJ2-7*01 4.0 111.0 CAMSISNFGNEKLTF_CASRMDRAYEQYF 1 9768 PGT-178 PGT 0.74 1480 PGT-178 190 9578 3 HomoSapiens PGT LLAGIGTVPI Naive T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*02:01 B2M MHCI -6950 chip0423_130464 6.92 13.33 Chip2 T1D_6 T1D TGTGCCAGCAGCTTAGCGGGTCGTGAGGGTACGCAGTATTTT CASSLAGREGTQYF TRBV11-3*01 TRBJ2-3*01 2.0 58.0 _CASSLAGREGTQYF 13 4849 NP380-388 FLU 0.5 60 NEG 193 4656 7 InfluenzaA NP ELRSRYWAI transitional T cells between effector and memory populations PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-B*08:01 B2M MHCI -6951 chip0423_62736 12.34 9.77 Chip2 T1D_5 T1D TGTGCAATGAGAGAGGGTGAGGGTGGAGGCTTCAAAACTATCTTT CAMREGEGGGFKTIF TRAV14/DV4*01 TRAJ9*01 20.0 994.0 TGTGCCACCAGTGAAGGACACCGCTATGGCTACACCTTC CATSEGHRYGYTF TRBV24-1*01 TRBJ1-2*01 24.0 1832.0 CAMREGEGGGFKTIF_CATSEGHRYGYTF 1 4199 BZLF1-190-197 EBV 0.67 2156 NEG 197 4002 10 EBV BZLF1 RAKFKQLL effector memory T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-B*08:01 B2M MHCI -6952 chip0423_208289 4.66 10.42 Chip2 healthy_3 healthy TGCATCGTCAGAACCTATACCTCAGGAACCTACAAATACATCTTT CIVRTYTSGTYKYIF TRAV26-1*01 TRAJ40*01 100.0 2871.0 TGCGCCAGCAGCCAAGATGAAATTGGACTAGCTTCAGATACGCAGTATTTT CASSQDEIGLASDTQYF TRBV4-1*01 TRBJ2-3*01 17.0 388.0 CIVRTYTSGTYKYIF_CASSQDEIGLASDTQYF 1 3010 M1 FLU 0.45 1250 NEG 172 2838 6 InfluenzaA M1 GILGFVFTL central memory T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*02:01 B2M MHCI -6953 chip0423_796261 11.18 7.66 Chip2 T1D_5 T1D TGTGCAATGAGAGAGGATTATGGCGGAAGCCAAGGAAATCTCATCTTT CAMREDYGGSQGNLIF TRAV14/DV4*01 TRAJ42*01 160.0 3975.0 TGCGCCAGCAGCCACCAGGAGGGGGCCATTCAGCCCCAGCATTTT CASSHQEGAIQPQHF TRBV4-1*01 TRBJ1-5*01 15.0 659.0 CAMREDYGGSQGNLIF_CASSHQEGAIQPQHF 1 3104 BZLF1-190-197 EBV 0.79 2156 BZLF1-190-197 209 2895 10 EBV BZLF1 RAKFKQLL effector memory T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-B*08:01 B2M MHCI -6954 chip0423_360358 11.07 7.6 Chip2 T1D_6 T1D TGTGTCAGCAGTTCCTCTGGCACCAGTTGGACCTTC CVSSSSGTSWTF TRBV6-2*01,TRBV6-3*01 TRBJ1-2*01 3.0 172.0 _CVSSSSGTSWTF 1 6294 EBNA3A-158-166 EBV 0.47 444 EBNA3A-158-166 214 6080 10 EBV EBNA3A QAKWRLQTL effector memory T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-B*08:01 B2M MHCI -6955 chip0423_302375 -1.4 10.07 Chip2 T1D_6 T1D TGTGCTATGACTACATACGACTACAATTTTAGCTTT CAMTTYDYNFSF TRAV8-4*01 TRAJ20*01 3.0 150.0 CAMTTYDYNFSF_ 1 6663 ZNT8-165-173 ZNT8 0.55 11 ZNT8-165-173 180 6483 3 HomoSapiens ZNT8 RLLYPDYQI Naive T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*02:01 B2M MHCI -6956 chip0423_245434 12.49 7.56 Chip2 T1D_5 T1D TGTGCCAGCAGCTCGCTTGGAGGCCAGGATAATTCACCCCTCCACTTT CASSSLGGQDNSPLHF TRBV7-9*01 TRBJ1-6*01 10.0 421.0 _CASSSLGGQDNSPLHF 1 4032 BZLF1-190-197 EBV 0.5 2156 NEG 184 3848 10 EBV BZLF1 RAKFKQLL effector memory T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-B*08:01 B2M MHCI -6957 chip0423_221172 8.89 9.05 Chip2 T1D_4 T1D TGTGCTCTAAGTGAAGGAGGCTAACTTTGGAAATGAGAAATTAACCTTT CALSEGG*??cFGNEKLTF TRAV16*01 TRAJ48*01 1.0 14.0 CALSEGG*??cFGNEKLTF_ 1 5335 EBV-LMP2A EBV 0.43 700 NEG 177 5158 8 EBV LMP2A CLGGLLTMV effector memory T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*02:01 B2M MHCI -6958 chip0423_148122 14.5 10.01 Chip2 T1D_4 T1D TGTGCTGTCAATTCAGGAAACACACCTCTTGTCTTT CAVNSGNTPLVF TRAV1-2*01 TRAJ29*01 15.0 1163.0 TGTGCCAGCAGCCAAGTCAACAACCCGGGGGATGGCTACACCTTC CASSQVNNPGDGYTF TRBV14*01 TRBJ1-2*01 12.0 353.0 CAVNSGNTPLVF_CASSQVNNPGDGYTF 31 2996 EBNA3A-158-166 EBV 0.78 444 NEG 220 2776 12 EBV EBNA3A QAKWRLQTL effector T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-B*08:01 B2M MHCI -6959 chip0423_455240 11.25 8.2 Chip2 T1D_4 T1D TGTGCTGTGAGAGACACGACGTGGGCTGCCAAGATCATCTTT CAVRDTTWAAKIIF TRAV3*01 TRAJ30*01 83.0 3679.0 TGTGCCAGCAGCTTAGGAGGGGGAGAGGGGGCCAGTGAGCAGTTCTTC CASSLGGGEGASEQFF TRBV7-6*01 TRBJ2-1*01 18.0 1137.0 CAVRDTTWAAKIIF_CASSLGGGEGASEQFF 6 6315 EBNA3A-193-201 EBV 0.44 1022 NEG 209 6106 10 EBV EBNA3A FLRGRAYGL effector memory T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-B*08:01 B2M MHCI -6960 chip0423_685269 10.8 7.34 Chip2 T1D_4 T1D TGTGCCAGCAGCTTAGCGGTCGGAGAAGGGCCCCAGCATTTT CASSLAVGEGPQHF TRBV7-9*01 TRBJ1-5*01 18.0 466.0 _CASSLAVGEGPQHF 113 4612 BZLF1-190-197 EBV 1.0 2156 BZLF1-190-197 198 4414 10 EBV BZLF1 RAKFKQLL effector memory T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-B*08:01 B2M MHCI -6961 chip0423_769141 15.94 9.74 Chip2 T1D_6 T1D TGTGCAGAGACGGACGGTCCGAATTTTGTCTTT CAETDGPNFVF TRAV5*01 TRAJ26*01 1.0 15.0 TGTGCCAGCAGCTACGGGGTCGGCTATGGCTACACCTTC CASSYGVGYGYTF TRBV7-2*01 TRBJ1-2*01 10.0 418.0 CAETDGPNFVF_CASSYGVGYGYTF 1 4832 BZLF1-190-197 EBV 1.0 2156 NEG 221 4611 12 EBV BZLF1 RAKFKQLL effector T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-B*08:01 B2M MHCI -6962 chip0423_596837 6.34 9.9 Chip2 healthy_4 healthy TGTGCAGCAAGGAACCTTAGGCACCAATGCAGGCCAATCAACCTTT CAARNLRca??ccNAGQSTF TRAV23/DV6*01 TRAJ27*01 1.0 88.0 TGCGCCAGCAGCTCGGACGGCATGAACACTGAAGCTTTCTTT CASSSDGMNTEAFF TRBV10-2*01 TRBJ1-1*01 3.0 161.0 CAARNLRca??ccNAGQSTF_CASSSDGMNTEAFF 1 8253 EBV-LMP2A EBV 0.88 700 EBV-LMP2A 168 8085 6 EBV LMP2A CLGGLLTMV central memory T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*02:01 B2M MHCI -6963 chip0423_242238 -0.38 8.55 Chip2 T1D_4 T1D TGTGCCAGCAGCACCCCCGGGACTAGCAACTACAATGAGCAGTTCTTC CASSTPGTSNYNEQFF TRBV7-2*01 TRBJ2-1*01 13.0 582.0 _CASSTPGTSNYNEQFF 1 9287 EBV-LMP2A EBV 0.43 700 NEG 194 9093 4 EBV LMP2A CLGGLLTMV Naive T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*02:01 B2M MHCI -6964 chip0423_38888 12.35 10.29 Chip2 T1D_5 T1D TGTGCAGCGAGCGAAACCTCCTACGACAAGGTGATATTT CAASETSYDKVIF TRAV13-1*01 TRAJ50*01 34.0 2056.0 TGTGCCAGCATCCCAAAACAAGAGAACACCATATATTTT CASIPKQENTIYF TRBV12-3*01,TRBV12-4*01 TRBJ1-3*01 44.0 1777.0 CAASETSYDKVIF_CASIPKQENTIYF 1 4269 BZLF1-190-197 EBV 0.71 2156 NEG 171 4098 9 EBV BZLF1 RAKFKQLL effector memory T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-B*08:01 B2M MHCI -6965 chip0423_500472 12.49 7.23 Chip2 T1D_4 T1D TGTGCTGTGAGGGACGCGCCGTGGGCTGGCAGGATCGTCTTT CAVRDAPWAGRIVF TRAV3*01 TRAJ30*01 27.0 1225.0 TGTGCCAGCAGCTTAGGAGGGGGAGAGGGGGCCAGTGAGCAGTTCTTC CASSLGGGEGASEQFF TRBV7-6*01 TRBJ2-1*01 13.0 1033.0 CAVRDAPWAGRIVF_CASSLGGGEGASEQFF 1 4076 EBNA3A-193-201 EBV 0.67 1022 NEG 236 3840 10 EBV EBNA3A FLRGRAYGL effector memory T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-B*08:01 B2M MHCI -6966 chip0423_729534 12.62 10.42 Chip2 T1D_6 T1D TGCGCCAGCAGTCTCCATCCATGGGGCTGCCTACAATGAGCAGGTCTTC CASSLHPW??gAAYNEQVF TRBV4-3*01 TRBJ2-1*01 11.0 969.0 _CASSLHPW??gAAYNEQVF 2 3236 EBNA3A-193-201 EBV 0.62 1022 NEG 192 3044 9 EBV EBNA3A FLRGRAYGL effector memory T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-B*08:01 B2M MHCI -6967 chip0423_351677 -3.14 11.09 Chip2 T1D_6 T1D TGTGCCGTGAGTGATGGAGGCTTCAAAACTATCTTT CAVSDGGFKTIF TRAV12-2*01 TRAJ9*01 3.0 216.0 CAVSDGGFKTIF_ 1 5052 MART1-ALA MART1 0.53 269 NEG 188 4864 4 HomoSapiens MART1 ALAGIGILTV Naive T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*02:01 B2M MHCI -6968 chip0423_448671 9.44 10.0 Chip2 T1D_5 T1D TGTGCAGCGGCGGAAACCTCCTACGACAAGGTGATATTT CAAAETSYDKVIF TRAV13-1*01 TRAJ50*01 54.0 2729.0 TGTGCCAGCCAACTAGCGGGAGGCACCGGGGAGCTGTTTTTT CASQLAGGTGELFF TRBV24-1*01 TRBJ2-2*01 54.0 1822.0 CAAAETSYDKVIF_CASQLAGGTGELFF 131 3644 BZLF1-190-197 EBV 0.71 2156 NEG 190 3454 8 EBV BZLF1 RAKFKQLL effector memory T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-B*08:01 B2M MHCI -6969 chip0423_447691 8.45 9.31 Chip2 T1D_5 T1D CGCCTCTTGAGTGATTTATGGCTATGCACTCTACTTC RLLSDL??tGYALYF TRAV26-2*01 TRAJ41*01 10.0 1298.0 TGTGCCAGCAGCCAATTGGGGGAGGCGAAGGAAGGCACTGAAGCTTTCTTT CASSQLGEAKEGTEAFF TRBV11-1*01 TRBJ1-1*01 55.0 1531.0 RLLSDL??tGYALYF_CASSQLGEAKEGTEAFF 1 6265 BZLF1-190-197 EBV 0.41 2156 NEG 191 6074 8 EBV BZLF1 RAKFKQLL effector memory T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-B*08:01 B2M MHCI -6970 chip0423_140470 9.33 8.71 Chip2 T1D_4 T1D TGTGCACCTTTCAACTTCAACAAATTTTACTTT CAPFNFNKFYF TRAV13-1*01 TRAJ21*01 2.0 27.0 TGTGCCAGCAGCCTTAGGGGGGGCCAAGAGACCCAGTACTTC CASSLRGGQETQYF TRBV7-3*01 TRBJ2-5*01 7.0 418.0 CAPFNFNKFYF_CASSLRGGQETQYF 4 5137 BZLF1-190-197 EBV 0.58 2156 BZLF1-190-197 209 4928 8 EBV BZLF1 RAKFKQLL effector memory T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-B*08:01 B2M MHCI -6971 chip0423_8831 13.97 7.58 Chip2 T1D_4 T1D TGTGCCGCCTCTGAAACCTCCTACGACAAGGTGATATTT CAASETSYDKVIF TRAV13-1*01 TRAJ50*01 102.0 8519.0 TGTGCCAGCAGCTCGACAGGGGGCGGGGATCAGCCCCAGCATTTT CASSSTGGGDQPQHF TRBV7-9*01 TRBJ1-5*01 24.0 798.0 CAASETSYDKVIF_CASSSTGGGDQPQHF 9 6790 BZLF1-190-197 EBV 0.57 2156 NEG 197 6593 10 EBV BZLF1 RAKFKQLL effector memory T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-B*08:01 B2M MHCI -6972 chip0423_460588 13.4 6.59 Chip2 T1D_6 T1D TGCATCCTCCCACTTGCTGGTGGTACTAGCTATGGAAAGCTGACATTT CILPLAGGTSYGKLTF TRAV26-2*01 TRAJ52*01 16.0 718.0 TGTGCCAGCAGCTTGGGACAGGCCTACGAGCAGTACTTC CASSLGQAYEQYF TRBV7-8*01 TRBJ2-7*01 16.0 863.0 CILPLAGGTSYGKLTF_CASSLGQAYEQYF 308 3679 EBNA3A-193-201 EBV 0.81 1022 EBNA3A-193-201 227 3452 10 EBV EBNA3A FLRGRAYGL effector memory T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-B*08:01 B2M MHCI -6973 chip0423_699059 9.86 6.96 Chip2 T1D_4 T1D _ 6746 6784 EBV-BLMF1 EBV 0.64 2531 NEG 211 6573 10 EBV BLMF1 GLCTLVAML effector memory T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*02:01 B2M MHCI -6974 chip0423_581289 -1.42 7.73 Chip2 T1D_5 T1D TGTGCTTCGACACTCCAGGGCGGGTCTGAAAAGCTGGTCTTT CASTLQGGSEKLVF TRAV38-1*01 TRAJ57*01 35.0 2320.0 TGTGCCAGCAGCCAACGAGATCCAGCGGAGCTGTTTTTT CASSQRDPAELFF TRBV3-1*01 TRBJ2-2*01 20.0 1188.0 CASTLQGGSEKLVF_CASSQRDPAELFF 1 7622 ZNT8-YAY-8 ZNT8 0.76 54 ZNT8-YAY-8 169 7453 3 HomoSapiens ZNT8 YAYAKWKL Naive T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-B*08:01 B2M MHCI -6975 chip0423_475967 13.6 10.31 Chip2 T1D_4 T1D TGTGCCAGCAGCTTAGCGGTCGGAGAAGGGCCCCAGCATTTT CASSLAVGEGPQHF TRBV7-9*01 TRBJ1-5*01 38.0 1779.0 _CASSLAVGEGPQHF 113 3719 BZLF1-190-197 EBV 0.69 2156 BZLF1-190-197 224 3495 8 EBV BZLF1 RAKFKQLL effector memory T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-B*08:01 B2M MHCI -6976 chip0423_834086 -4.34 8.67 Chip2 T1D_4 T1D TGTGCTCTCCCTCGAGGCATGCGGGCTCCCTGCTCTCCTTT CALPRGat?AGSLLSF TRAV16*01 TRAJ39*01 6.0 396.0 TGCAGCGTGAAGGACAGGGCAGGGAACACTGAAGCTTTCTTT CSVKDRAGNTEAFF TRBV29-1*01 TRBJ1-1*01 271.0 10490.0 CALPRGat?AGSLLSF_CSVKDRAGNTEAFF 1 5402 IAPP-LNH-9 IAPP 0.86 15 IAPP-LNH-9 179 5223 2 HomoSapiens IAPP LNHLKATPI Naive T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-B*08:01 B2M MHCI -6977 chip0423_188773 7.42 9.97 Chip2 T1D_5 T1D TGTGCCAGCAGCTCCTTAAGCGGGGGGGCAGGAAATGAGCAGTTCTTC CASSSLSGGAGNEQFF TRBV7-9*01 TRBJ2-1*01 64.0 3451.0 _CASSSLSGGAGNEQFF 33 6702 BZLF1-190-197 EBV 0.64 2156 NEG 189 6513 8 EBV BZLF1 RAKFKQLL effector memory T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-B*08:01 B2M MHCI -6978 chip0423_863252 -3.53 10.03 Chip2 T1D_6 T1D TGTGCCGTGGATAACCAGGGAGGAAAGCTTATCTTC CAVDNQGGKLIF TRAV12-2*01 TRAJ23*01 27.0 2324.0 TGTGCCAGCAGTTACTCGGGGGGCTACGAGCAGTACTTC CASSYSGGYEQYF TRBV6-5*01 TRBJ2-7*01 29.0 1527.0 CAVDNQGGKLIF_CASSYSGGYEQYF 1 5166 MART1-ALA MART1 0.64 269 NEG 200 4966 2 HomoSapiens MART1 ALAGIGILTV Naive T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*02:01 B2M MHCI -6979 chip0423_841792 10.35 7.33 Chip2 T1D_5 T1D TGTGCAGCAACGGAAACCTCCTACGACAAGGTGATATTT CAATETSYDKVIF TRAV13-1*01 TRAJ50*01 2.0 109.0 TGTGCCAGCAGCCCTCTTGGGAGCAATGAAAAACTGTTTTTT CASSPLGSNEKLFF TRBV7-9*01 TRBJ1-4*01 14.0 471.0 CAATETSYDKVIF_CASSPLGSNEKLFF 25 8693 BZLF1-190-197 EBV 0.67 2156 NEG 224 8469 10 EBV BZLF1 RAKFKQLL effector memory T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-B*08:01 B2M MHCI -6980 chip0423_505903 14.07 7.73 Chip2 T1D_4 T1D TGCATCGTCAGAGAGGGAGGAGGTGCTGACGGACTCCCCTTT CIVREGGGADGLPF TRAV26-1*01 TRAJ45*01 58.0 4060.0 TGTGCCAGCAGCTTAGCGGTCGGAGAAGGGCCCCAGCATTTT CASSLAVGEGPQHF TRBV7-9*01 TRBJ1-5*01 1.0 19.0 CIVREGGGADGLPF_CASSLAVGEGPQHF 21 4588 BZLF1-190-197 EBV 0.74 2156 BZLF1-190-197 185 4403 10 EBV BZLF1 RAKFKQLL effector memory T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-B*08:01 B2M MHCI -6981 chip0423_389220 15.82 11.15 Chip2 T1D_5 T1D TGTGCCGCAAGTATAAAAGGCTTTGGGAATGTGCTGAATTGCGGGTCCGGCACTCAAGTG CAASIKGFGNVLNCGSGTQV TRAV13-1*01 TRAJ41*01 7.0 28.0 TGTGCCAGCAGTGGACGTGTAGAGGAATACGGCGGGGAGCTGTTTTTT CASSGRVEEYGGELFF TRBV27*01 TRBJ2-2*01 63.0 3055.0 CAASIKGFGNVLNCGSGTQV_CASSGRVEEYGGELFF 1 2570 NP140-148 FLU 0.4 102 NEG 171 2399 12 InfluenzaA NP HSNLNDATY effector T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*01:01 B2M MHCI -6982 chip0423_610825 12.78 6.9 Chip2 T1D_6 T1D TGCATCCTCCCACTTGCTGGTGGTACTAGCTATGGAAAGCTGACATTT CILPLAGGTSYGKLTF TRAV26-2*01 TRAJ52*01 7.0 322.0 TGTGCCAGCAGCTTGGGACAGGCCTACGAGCAGTACTTC CASSLGQAYEQYF TRBV7-8*01 TRBJ2-7*01 26.0 1236.0 CILPLAGGTSYGKLTF_CASSLGQAYEQYF 308 4877 EBNA3A-193-201 EBV 0.79 1022 EBNA3A-193-201 241 4636 10 EBV EBNA3A FLRGRAYGL effector memory T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-B*08:01 B2M MHCI -6983 chip0423_342092 6.35 9.43 Chip2 healthy_3 healthy TGTGCAGCAAGCGATAGCTCAGGAGGAGGTGCTGACGGCCTCACCTTT CAASDSSGGGADGLTF TRAV29/DV5*01 TRAJ45*01 33.0 1057.0 TGTGCCAGCTCTAGCTCTGGGGCCAACGTCCTGACTTTC CASSSSGANVLTF TRBV5-6*01 TRBJ2-6*01 30.0 2111.0 CAASDSSGGGADGLTF_CASSSSGANVLTF 1 9893 M1-ALA FLU 0.44 10 NEG 151 9742 6 InfluenzaA M1 ALASCMGLIY central memory T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*01:01 B2M MHCI -6984 chip0423_164518 -0.95 8.97 Chip2 T1D_5 T1D TGTGCTGTGGGGGCCTCGAACACCAATGCAGGCAAATCAACCTTT CAVGASNTNAGKSTF TRAV21*01 TRAJ27*01 64.0 2040.0 TGTGCCAGCAGTGAAGCGCCCACAGGGAGCGACTATGGCTACACCTTC CASSEAPTGSDYGYTF TRBV6-1*01 TRBJ1-2*01 38.0 1165.0 CAVGASNTNAGKSTF_CASSEAPTGSDYGYTF 1 7057 G6PC2-LTS-10 IGRP 0.89 59 G6PC2-LTS-10 178 6879 3 HomoSapiens G6PC2 LTSLTILQLY Naive T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*01:01 B2M MHCI -6985 chip0423_148335 5.87 12.51 Chip2 T1D_4 T1D TGTGCCGTGAACGGGGCTGGTGGCTACAATAAGCTGTTTTTT CAVNGAGGYNKLFF TRAV12-2*01 TRAJ4*01 7.0 272.0 TGTGCCAGCAGTTACGGGAACGAGCAGTACTTC CASSYGNEQYF TRBV6-2*01,TRBV6-3*01 TRBJ2-7*01 3.0 86.0 CAVNGAGGYNKLFF_CASSYGNEQYF 1 6966 IGRP-211-219 IGRP 0.62 13 NEG 168 6798 7 HomoSapiens IGRP NLFLFLFAV transitional T cells between effector and memory populations PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*02:01 B2M MHCI -6986 chip0423_708712 8.83 8.66 Chip2 T1D_5 T1D TGTGCAGAGAATATAGCCATCTACTACGCGCTACAATAAGCTTATTATC CAENIAIY??tTRYNKLII TRAV13-2*01 TRAJ4*01 4.0 118.0 CAENIAIY??tTRYNKLII_ 1 6808 BZLF1-190-197 EBV 0.75 2156 BZLF1-190-197 169 6639 8 EBV BZLF1 RAKFKQLL effector memory T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-B*08:01 B2M MHCI -6987 chip0423_33389 7.3 11.32 Chip2 T1D_4 T1D TGTGCTCTACGGGAATGTCTTCCGGACGCGGTGCTGCCGGACTCACCGTT CALRECLPg?aRGAAGLTV TRAV16*01 TRAJ45*01 9.0 375.0 TGCAGTGCTACTAACCAGTACGACGGACCCGACACTGAAGCTTTCTTT CSATNQYDGPDTEAFF TRBV20-1*01 TRBJ1-1*01 21.0 607.0 CALRECLPg?aRGAAGLTV_CSATNQYDGPDTEAFF 1 5087 BZLF1-190-197 EBV 0.4 2156 NEG 197 4890 7 EBV BZLF1 RAKFKQLL transitional T cells between effector and memory populations PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-B*08:01 B2M MHCI -6988 chip0423_790484 7.13 9.26 Chip2 T1D_6 T1D TGTGCCAGCAGCTTGGGACAGGCCTACGACCCGTACTTC CASSLGQAYDPYF TRBV7-8*01 TRBJ2-7*01 3.0 193.0 _CASSLGQAYDPYF 1 10561 EBNA3A-193-201 EBV 0.81 1022 EBNA3A-193-201 185 10376 8 EBV EBNA3A FLRGRAYGL effector memory T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-B*08:01 B2M MHCI -6989 chip0423_765631 11.61 8.0 Chip2 T1D_4 T1D TGTGCCAGCAGCCCCGGGGGGGCGCGCGGCGGGCTGTACTGC CASSPGGARGGLYC TRBV5-6*01 TRBJ2-7*01 2.0 156.0 _CASSPGGARGGLYC 1 4074 EBV-LMP1-1 EBV 0.53 237 NEG 177 3897 10 EBV LMP1 YLLEMLWRL effector memory T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*02:01 B2M MHCI -6990 chip0423_861209 11.24 6.7 Chip2 T1D_4 T1D TGTGCCAGCAGCCAAGTCAACAACCCGGGGGATGGCTACACCTTC CASSQVNNPGDGYTF TRBV14*01 TRBJ1-2*01 9.0 215.0 _CASSQVNNPGDGYTF 94 6689 EBNA3A-158-166 EBV 0.71 444 NEG 213 6476 10 EBV EBNA3A QAKWRLQTL effector memory T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-B*08:01 B2M MHCI -6991 chip0423_553263 10.94 8.94 Chip2 T1D_4 T1D TGTGCTGTGAGTGATGGAGAAGGTGCCCCGCAGCTGGTATTT CAVSDGEGAPQLVF TRAV8-6*01 TRAJ54*01 32.0 816.0 CAVSDGEGAPQLVF_ 1 5080 BZLF1-190-197 EBV 1.0 2156 BZLF1-190-197 201 4879 10 EBV BZLF1 RAKFKQLL effector memory T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-B*08:01 B2M MHCI -6992 chip0423_377483 11.49 9.55 Chip2 T1D_4 T1D TGTGCTGTGGGTGATAGAGCAGGCGCCCAGGAGCTGGTATTT CAVGDRAGAQELVF TRAV8-6*01 TRAJ54*01 5.0 159.0 CAVGDRAGAQELVF_ 1 4473 BZLF1-190-197 EBV 0.93 2156 BZLF1-190-197 178 4295 9 EBV BZLF1 RAKFKQLL effector memory T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-B*08:01 B2M MHCI -6993 chip0423_462470 10.98 9.58 Chip2 T1D_6 T1D TGCAGCGCCGGCAGGGACGGGACTAATGAAAAACTGTTTTTT CSAGRDGTNEKLFF TRBV29-1*01 TRBJ1-4*01 95.0 3435.0 _CSAGRDGTNEKLFF 159 5674 EBV-BLMF1 EBV 0.58 2531 NEG 175 5499 9 EBV BLMF1 GLCTLVAML effector memory T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*02:01 B2M MHCI -6994 chip0423_33640 14.46 8.31 Chip2 T1D_5 T1D TGTGCAATGAGAGAGGGGGAAAGCAGTGCTTCCAAGATAATCTTT CAMREGESSASKIIF TRAV14/DV4*01 TRAJ3*01 1.0 37.0 TGCAGCGTTGGACAGGCTTATGGCTACACCTTC CSVGQAYGYTF TRBV29-1*01 TRBJ1-2*01 22.0 2081.0 CAMREGESSASKIIF_CSVGQAYGYTF 2 2982 BZLF1-190-197 EBV 0.78 2156 NEG 189 2793 12 EBV BZLF1 RAKFKQLL effector T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-B*08:01 B2M MHCI -6995 chip0423_642513 -1.01 7.3 Chip2 T1D_6 T1D TGTGCCAGCAGCTTGGCAGGGACCAGCTATGGCTACACCTTC CASSLAGTSYGYTF TRBV7-2*01 TRBJ1-2*01 10.0 496.0 _CASSLAGTSYGYTF 1 8508 MART1-ALA MART1 0.6 269 NEG 180 8328 3 HomoSapiens MART1 ALAGIGILTV Naive T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*02:01 B2M MHCI -6996 chip0423_56489 -2.12 12.6 Chip2 T1D_6 T1D TGTGCTTTCGATAGCAACTATCAGTTAATCTGG CAFDSNYQLIW TRAV38-1*01 TRAJ33*01 6.0 458.0 TGTGCCAGCAGTTTAACACCATCGGCCTACGAGCAGTACTTC CASSLTPSAYEQYF TRBV27*01 TRBJ2-7*01 16.0 614.0 CAFDSNYQLIW_CASSLTPSAYEQYF 1 4898 GP160-311-320 HIV 0.44 109 NEG 169 4729 1 HIV-1 GP160 RGPGRAFVTI Naive T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*02:01 B2M MHCI -6997 chip0423_655481 12.25 7.49 Chip2 T1D_4 T1D TGTGCCAGCAGCCAAGTCAACAACCCGGGGGATGGCTACACCTTC CASSQVNNPGDGYTF TRBV14*01 TRBJ1-2*01 24.0 809.0 _CASSQVNNPGDGYTF 94 4476 EBNA3A-158-166 EBV 0.42 444 NEG 196 4280 10 EBV EBNA3A QAKWRLQTL effector memory T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-B*08:01 B2M MHCI -6998 chip0423_868868 10.08 10.12 Chip2 T1D_5 T1D TGTGCAATGAGAGAGGTCTCGGGCAGGAGAGCACTTACTTTT CAMREVSGRRALTF TRAV14/DV4*01 TRAJ5*01 65.0 3013.0 TGTGCCAGCTCCTTTAACTCATTGCAGGAGATCGCCTACGAGCAGTACTTC CASSFNSLQEIAYEQYF TRBV7-3*01 TRBJ2-7*01 44.0 1711.0 CAMREVSGRRALTF_CASSFNSLQEIAYEQYF 1 4814 BZLF1-190-197 EBV 0.43 2156 NEG 164 4650 9 EBV BZLF1 RAKFKQLL effector memory T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-B*08:01 B2M MHCI -6999 chip0423_105405 -3.76 9.02 Chip2 T1D_6 T1D TGTGCCAGCAGCTATGGGGGGGACACTGAAGCTTTCTTT CASSYGGDTEAFF TRBV9*01 TRBJ1-1*01 31.0 1776.0 _CASSYGGDTEAFF 1 6938 MART1-A28L MART1 0.43 84 NEG 169 6769 2 HomoSapiens MART1 ALGIGILTV Naive T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*02:01 B2M MHCI -7000 chip0423_36144 14.37 11.06 Chip2 T1D_4 T1D TGTGCCAGCAGCTTAGCGGTCGGAGAAGGGCCCCAGCATTTT CASSLAVGEGPQHF TRBV7-9*01 TRBJ1-5*01 60.0 2305.0 _CASSLAVGEGPQHF 113 3614 BZLF1-190-197 EBV 0.74 2156 BZLF1-190-197 211 3403 12 EBV BZLF1 RAKFKQLL effector T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-B*08:01 B2M MHCI -7001 chip0423_406828 -3.36 8.31 Chip2 T1D_4 T1D TGTGCAATTTCCCTATCTAACTTTGGAAATGAGAAATTAACCTTT CAISLSNFGNEKLTF TRAV12-3*01 TRAJ48*01 37.0 1236.0 CGTGCCAGTAGTCACGCGGACGGGCAGTTGGATGATGAGCAGTTCTTC RASSHADGQLDDEQFF TRBV19*01 TRBJ2-1*01 30.0 1962.0 CAISLSNFGNEKLTF_RASSHADGQLDDEQFF 1 6817 PGT-178 PGT 0.7 1480 PGT-178 161 6656 2 HomoSapiens PGT LLAGIGTVPI Naive T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*02:01 B2M MHCI -7002 chip0423_228187 15.56 9.43 Chip2 T1D_5 T1D TGTGCAATGAGAGAGGGCGAGGGTGGCGGCTTCAAAACTATCTTT CAMREGEGGGFKTIF TRAV14/DV4*01 TRAJ9*01 15.0 350.0 TGTGCCAGCAGCTCCGGACTAGCGGGGGGCTCTCACACCGGGGAGCTGTTTTTT CASSSGLAGGSHTGELFF TRBV11-1*01 TRBJ2-2*01 61.0 3174.0 CAMREGEGGGFKTIF_CASSSGLAGGSHTGELFF 10 3448 BZLF1-190-197 EBV 0.62 2156 NEG 189 3259 12 EBV BZLF1 RAKFKQLL effector T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-B*08:01 B2M MHCI -7003 chip0423_733100 11.3 12.51 Chip2 T1D_5 T1D TGTGCCAGCCAACTAGCGGGAGGCACCGGGGAGCTGTTTTTT CASQLAGGTGELFF TRBV24-1*01 TRBJ2-2*01 46.0 2224.0 _CASQLAGGTGELFF 69 2441 BZLF1-190-197 EBV 1.0 2156 NEG 197 2244 9 EBV BZLF1 RAKFKQLL effector memory T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-B*08:01 B2M MHCI -7004 chip0423_727185 -2.54 9.37 Chip2 T1D_4 T1D TGTGCAATGAGCGCGGGCTTT CAMSAGF TRAV12-3*01 TRAJ11*01 5.0 25.0 CAMSAGF_ 1 7044 PGT-178 PGT 0.88 1480 NEG 157 6887 3 HomoSapiens PGT LLAGIGTVPI Naive T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*02:01 B2M MHCI -7005 chip0423_719233 -1.32 11.39 Chip2 T1D_4 T1D TGTGCCGTGAATGTACCCCCGATTACTACCTCAGGAACCTACAAATACATCTTT CAVNVPPITTSGTYKYIF TRAV39*01 TRAJ40*01 14.0 190.0 TGTGCCAGTGGGCTGTTTTATAGCAATCAGCCCCAGCATTTT CASGLFYSNQPQHF TRBV5-6*01 TRBJ1-5*01 78.0 3379.0 CAVNVPPITTSGTYKYIF_CASGLFYSNQPQHF 1 6441 GAD2-SRK-8 GAD65 0.75 10 NEG 149 6292 3 HomoSapiens GAD2 SRKHKWKL Naive T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-B*08:01 B2M MHCI -7006 chip0423_278686 9.59 8.51 Chip2 T1D_5 T1D TGTGCAGCAAGTGAAACCTCCTACGACAAGGTGATTTTT CAASETSYDKVIF TRAV13-1*01 TRAJ50*01 20.0 868.0 TGTGCCAGCAGCTTAGTGGACAGGCCCTACGAGCAGTACTTC CASSLVDRPYEQYF TRBV7-9*01 TRBJ2-7*01 52.0 3250.0 CAASETSYDKVIF_CASSLVDRPYEQYF 13 4710 BZLF1-190-197 EBV 0.46 2156 BZLF1-190-197 177 4533 8 EBV BZLF1 RAKFKQLL effector memory T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-B*08:01 B2M MHCI -7007 chip0423_703329 -0.67 9.09 Chip2 T1D_6 T1D TGTGCCAGTAGTATGGTTGTGGATTATGGCTACACCTTC CASSMVVDYGYTF TRBV19*01 TRBJ1-2*01 31.0 1486.0 _CASSMVVDYGYTF 1 9577 MART1-27-35 MART1 0.41 7 MART1-27-35 162 9415 3 HomoSapiens MART1 AAGIGILTV Naive T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*02:01 B2M MHCI -7008 chip0423_308269 8.82 11.41 Chip2 T1D_4 T1D TGCGCCAGCAGCACTTCGAGGGGATCTGGAAATCACCATATATTT CASSTSRGSGNHHIF TRBV4-1*01 TRBJ1-3*01 23.0 1055.0 _CASSTSRGSGNHHIF 1 5971 BZLF1-190-197 EBV 0.8 2156 BZLF1-190-197 177 5794 9 EBV BZLF1 RAKFKQLL effector memory T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-B*08:01 B2M MHCI -7009 chip0423_288346 8.27 11.17 Chip2 T1D_5 T1D TGTGCAGCGGCGGAAACCTCCTACGACAAGGTGATATTT CAAAETSYDKVIF TRAV13-1*01 TRAJ50*01 5.0 238.0 TGTGCCAGCCAACTAGCGGGAGGCACCGGGGAGCTGTTTTTT CASQLAGGTGELFF TRBV24-1*01 TRBJ2-2*01 10.0 372.0 CAAAETSYDKVIF_CASQLAGGTGELFF 131 7949 BZLF1-190-197 EBV 0.67 2156 NEG 193 7756 7 EBV BZLF1 RAKFKQLL transitional T cells between effector and memory populations PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-B*08:01 B2M MHCI -7010 chip0423_755651 -1.12 9.25 Chip2 T1D_4 T1D TGTGCTCTTGTGAATTATGGAGGAAGCCAAGGAAATCTCATCTTT CALVNYGGSQGNLIF TRAV19*01 TRAJ42*01 52.0 2111.0 TGTGCCAGCAGCTTAGGGAATACTGAAGCTTTCTCT CASSLGNTEAFS TRBV7-6*01 TRBJ1-1*01 39.0 2529.0 CALVNYGGSQGNLIF_CASSLGNTEAFS 1 6534 IAPP-STN-9 IAPP 0.45 48 NEG 149 6385 3 HomoSapiens IAPP STNVGSNTY Naive T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*01:01 B2M MHCI -7011 chip0423_338896 12.89 10.55 Chip2 T1D_5 T1D TGTGCCATCAGTGATGTCACCCCTGAACTCAATGAGCAGTTCTTC CAISDVTPELNEQFF TRBV10-3*01 TRBJ2-1*01 49.0 2315.0 _CAISDVTPELNEQFF 1 3799 BZLF1-190-197 EBV 0.77 2156 NEG 157 3642 9 EBV BZLF1 RAKFKQLL effector memory T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-B*08:01 B2M MHCI -7012 chip0423_448346 8.26 11.88 Chip2 T1D_5 T1D TGTGCAGCAAGGGAAACCTCCTACGACAAGGTGATATTT CAARETSYDKVIF TRAV13-1*01 TRAJ50*01 28.0 1649.0 TGCATCCTGAGCGCCGGAGTGGAGGTAGCAACTATAAACTGACATTT CILSAGVga?GSNYKLTF TRAV26-2*01 TRAJ53*01 51.0 1957.0 0.54 TGTGCCTGCCGCCGGGTGGGACAGGGGGTGGGAGAGACCCAGTACTTC CACRRVGQGVGETQYF TRBV7-9*01 TRBJ2-5*01 5.0 194.0 CAARETSYDKVIF_CACRRVGQGVGETQYF 1 3684 BZLF1-190-197 EBV 0.56 2156 NEG 171 3513 7 EBV BZLF1 RAKFKQLL transitional T cells between effector and memory populations PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-B*08:01 B2M MHCI -7013 chip0423_322219 15.0 9.01 Chip2 T1D_6 T1D TGTGCAGCAAGCAAGATAGAGGAGGAGGTGCTGCCGGACTCACCTTT CAASKIEga?GGAAGLTF TRAV23/DV6*01 TRAJ45*01 49.0 2132.0 TGTGCCAGCAGCTTGGGACAGGCCTACGAGCAGTACTTC CASSLGQAYEQYF TRBV7-8*01 TRBJ2-7*01 28.0 1555.0 CAASKIEga?GGAAGLTF_CASSLGQAYEQYF 2 5083 EBNA3A-193-201 EBV 0.73 1022 NEG 226 4857 12 EBV EBNA3A FLRGRAYGL effector T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-B*08:01 B2M MHCI -7014 chip0423_787015 12.28 7.06 Chip2 T1D_5 T1D TGTGCAATGAGCGAGGGTCCGCCCTCCTACGCCACGGTGCTTTTT CAMSEGPPSYATVLF TRAV12-3*01 TRAJ50*01 3.0 219.0 TGTGCCAGCAGCTTAAAGAGCAGCACAGATACGCAGTATTTT CASSLKSSTDTQYF TRBV7-3*01 TRBJ2-3*01 3.0 43.0 CAMSEGPPSYATVLF_CASSLKSSTDTQYF 1 4061 BZLF1-190-197 EBV 0.8 2156 NEG 198 3863 10 EBV BZLF1 RAKFKQLL effector memory T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-B*08:01 B2M MHCI -7015 chip0423_220669 10.66 10.42 Chip2 T1D_5 T1D _ 6746 5543 BZLF1-190-197 EBV 0.69 2156 BZLF1-190-197 168 5375 9 EBV BZLF1 RAKFKQLL effector memory T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-B*08:01 B2M MHCI -7016 chip0423_292911 10.71 11.39 Chip2 T1D_4 T1D TGCATCGTCAGAGAGGGAGGAGGTGCTGACGGACTCACCTTT CIVREGGGADGLTF TRAV26-1*01 TRAJ45*01 1.0 43.0 TGTGCCAGCAGCTTAGCGGTCGGAGAAGGGCCCCAGCATTTT CASSLAVGEGPQHF TRBV7-9*01 TRBJ1-5*01 7.0 271.0 CIVREGGGADGLTF_CASSLAVGEGPQHF 68 3601 BZLF1-190-197 EBV 0.76 2156 BZLF1-190-197 186 3415 9 EBV BZLF1 RAKFKQLL effector memory T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-B*08:01 B2M MHCI -7017 chip0423_543611 -0.86 9.61 Chip2 T1D_4 T1D TGTGCCAGCACAGGGGGGAACGGTGAAGCTTTCTTT CASTGGNGEAFF TRAV14/DV4*01 TRAJ40*01 3.0 14.0 TGTGCCAGCACAGGGGGGAACGGTGAAGCTTTCTTT CASTGGNGEAFF TRBV2*01 TRBJ1-1*01 83.0 4955.0 CASTGGNGEAFF_CASTGGNGEAFF 1 6103 PGT-178 PGT 0.67 1480 NEG 163 5940 4 HomoSapiens PGT LLAGIGTVPI Naive T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*02:01 B2M MHCI -7018 chip0423_737228 -3.07 10.01 Chip2 healthy_3 healthy TGTGCATTCACGATATCTAACTTTGGAAATGAGAAATTAACCTTT CAFTISNFGNEKLTF TRAV12-3*01 TRAJ48*01 85.0 3174.0 TGTGCCATCAGTGAAGAGGCAGGGGGCTCCAGCAATCAGCCCCAGCATTTT CAISEEAGGSSNQPQHF TRBV10-3*01 TRBJ1-5*01 4.0 81.0 CAFTISNFGNEKLTF_CAISEEAGGSSNQPQHF 1 6346 PGT-178 PGT 0.78 1480 PGT-178 162 6184 2 HomoSapiens PGT LLAGIGTVPI Naive T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*02:01 B2M MHCI -7019 chip0423_610896 10.03 6.82 Chip2 T1D_5 T1D TGTGCAGCCAGTTAGCCCTCCTCCGACTAGGTGATATTT CAAS*PSSD*VIF TRAV13-1*01 TRAJ50*01 2.0 135.0 TGTGCCAGCAGCCCACTCGGGACAGATTACAATGAGCAGTTCTTC CASSPLGTDYNEQFF TRBV7-9*01 TRBJ2-1*01 53.0 2354.0 CAAS*PSSD*VIF_CASSPLGTDYNEQFF 1 9312 BZLF1-190-197 EBV 0.52 2156 BZLF1-190-197 216 9096 10 EBV BZLF1 RAKFKQLL effector memory T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-B*08:01 B2M MHCI -7020 chip0423_236142 7.33 12.91 Chip2 T1D_6 T1D TGCATCCTCCCACTTGCTGGTGGTACTAGCTATGGAAAGCTGACATTT CILPLAGGTSYGKLTF TRAV26-2*01 TRAJ52*01 2.0 34.0 TGTGCCAGCAGCTTGGGACAGGCCTACGAGCAGTACTTC CASSLGQAYEQYF TRBV7-8*01 TRBJ2-7*01 19.0 1253.0 CILPLAGGTSYGKLTF_CASSLGQAYEQYF 308 4444 EBNA3A-193-201 EBV 0.93 1022 NEG 159 4285 7 EBV EBNA3A FLRGRAYGL transitional T cells between effector and memory populations PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-B*08:01 B2M MHCI -7021 chip0423_653090 8.66 8.72 Chip2 T1D_4 T1D TGTGCTGTGTGTGATTCGAGGTGGGTTGTCAAGATCTTCTTT CAVCDSRWVVKIFF TRAV3*01 TRAJ30*01 11.0 447.0 TGTGCCAGCAGCTTAGGAGGGGGAGAGGGGGCCAGTGAGCAGTTCTTC CASSLGGGEGASEQFF TRBV7-6*01 TRBJ2-1*01 22.0 1127.0 CAVCDSRWVVKIFF_CASSLGGGEGASEQFF 1 7587 EBNA3A-193-201 EBV 0.48 1022 NEG 188 7399 8 EBV EBNA3A FLRGRAYGL effector memory T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-B*08:01 B2M MHCI -7022 chip0423_339126 11.06 11.12 Chip2 T1D_4 T1D TGTGCCAGCAGCCAAGTCAACAACCCGGGGGATGGCTACACCTTC CASSQVNNPGDGYTF TRBV14*01 TRBJ1-2*01 9.0 185.0 _CASSQVNNPGDGYTF 94 4412 EBNA3A-158-166 EBV 0.82 444 NEG 188 4224 9 EBV EBNA3A QAKWRLQTL effector memory T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-B*08:01 B2M MHCI -7023 chip0423_704499 15.61 9.8 Chip2 T1D_4 T1D TGCATCGTCAGAGAGGAAGGAGGTGCTGACGGACTCCCCTTT CIVREEGGADGLPF TRAV26-1*01 TRAJ45*01 35.0 1971.0 TGTGCCAGCAGCTTAGCGGTCGGAGAAGGGCCCCAGCATTCT CASSLAVGEGPQHS TRBV7-9*01 TRBJ1-5*01 32.0 1238.0 CIVREEGGADGLPF_CASSLAVGEGPQHS 1 4640 BZLF1-190-197 EBV 0.72 2156 BZLF1-190-197 196 4444 12 EBV BZLF1 RAKFKQLL effector T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-B*08:01 B2M MHCI -7024 chip0423_117752 14.55 10.55 Chip2 T1D_5 T1D TGTGCAATGAGGGCCATTGAGGGGGCAAACAACCTCTTCTTT CAMRAIEGANNLFF TRAV14/DV4*01 TRAJ36*01 133.0 6168.0 CAMRAIEGANNLFF_ 17 3180 BZLF1-190-197 EBV 0.58 2156 BZLF1-190-197 178 3002 12 EBV BZLF1 RAKFKQLL effector T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-B*08:01 B2M MHCI -7025 chip0423_501731 -1.71 10.17 Chip2 T1D_5 T1D TGTGCTACGGCCGACAGAGGCTCAACCCTGGGGAGGCTATACTTT CATADRGSTLGRLYF TRAV17*01 TRAJ18*01 96.0 2815.0 TGTGCCAGCAGTGAATGGGGTTATGGGAGCTCCTACGAGCAGTACTTC CASSEWGYGSSYEQYF TRBV2*01 TRBJ2-7*01 49.0 2042.0 CATADRGSTLGRLYF_CASSEWGYGSSYEQYF 1 4987 ZNT8-VTD-9 ZNT8 0.58 65 ZNT8-VTD-9 185 4802 3 HomoSapiens ZNT8 VTDAAHLLI Naive T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*01:01 B2M MHCI -7026 chip0423_166560 -3.02 9.21 Chip2 T1D_6 T1D TGCACCAGCAGCTCCGGGACAGGCTCCTACGAGCAGTACTTC CTSSSGTGSYEQYF TRBV5-1*01 TRBJ2-7*01 50.0 3678.0 _CTSSSGTGSYEQYF 1 7241 EBV-LMP2A EBV 0.79 700 EBV-LMP2A 182 7059 2 EBV LMP2A CLGGLLTMV Naive T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*02:01 B2M MHCI -7027 chip0423_634642 16.49 10.85 Chip2 healthy_3 healthy TGTGCTCTGAGTTCTTATTCTGGGGGTTACCAGAAAGTTACCTTT CALSSYSGGYQKVTF TRAV19*01 TRAJ13*01 36.0 1514.0 CALSSYSGGYQKVTF_ 4 3179 NP44-52 FLU 0.44 474 NP44-52 178 3001 12 InfluenzaA NP CTELKLSDY effector T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*01:01 B2M MHCI -7028 chip0423_394793 -2.08 8.19 Chip2 T1D_4 T1D TGTGCCGTGCGGGATGACATGCGCTTT CAVRDDMRF TRAV12-2*01 TRAJ43*01 2.0 163.0 CAVRDDMRF_ 1 5374 PGT-178 PGT 0.75 1480 NEG 191 5183 3 HomoSapiens PGT LLAGIGTVPI Naive T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*02:01 B2M MHCI -7029 chip0423_582211 5.43 9.28 Chip2 T1D_4 T1D TGTGCAATGAGCTTTTCTGGTGGCTACAATAAGCTGATTTTT CAMSFSGGYNKLIF TRAV14/DV4*01 TRAJ4*01 2.0 6.0 TGCAGTGCTAGAGATCGGGGAGCGGAGAACACCGGGGAGCTGTTTTTT CSARDRGAENTGELFF TRBV20-1*01 TRBJ2-2*01 21.0 1053.0 CAMSFSGGYNKLIF_CSARDRGAENTGELFF 1 5719 BZLF1-190-197 EBV 0.71 2156 NEG 180 5539 6 EBV BZLF1 RAKFKQLL central memory T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-B*08:01 B2M MHCI -7030 chip0423_518265 15.37 10.35 Chip2 T1D_5 T1D TGTGCAGCAACGGAAACCTCCTACGACAAGGTGATATTT CAATETSYDKVIF TRAV13-1*01 TRAJ50*01 36.0 2948.0 TGTGCCAGCAGTCCCCCGGGGAGAAATGAAAAACTGTTTTTT CASSPPGRNEKLFF TRBV12-3*01,TRBV12-4*01 TRBJ1-4*01 40.0 1808.0 CAATETSYDKVIF_CASSPPGRNEKLFF 34 4982 BZLF1-190-197 EBV 0.83 2156 NEG 202 4780 12 EBV BZLF1 RAKFKQLL effector T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-B*08:01 B2M MHCI -7031 chip0423_564095 13.13 10.16 Chip2 T1D_5 T1D TGTGCAGCGGCGGAAACCTCCTACGACAAGGTGATATTT CAAAETSYDKVIF TRAV13-1*01 TRAJ50*01 1.0 33.0 TGTGCCAGCCAACTAGCGGGAGGCACCGGGGAGCTGTTTTTT CASQLAGGTGELFF TRBV24-1*01 TRBJ2-2*01 13.0 771.0 CAAAETSYDKVIF_CASQLAGGTGELFF 131 4441 BZLF1-190-197 EBV 0.42 2156 NEG 201 4240 9 EBV BZLF1 RAKFKQLL effector memory T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-B*08:01 B2M MHCI -7032 chip0423_237704 7.25 9.99 Chip2 healthy_4 healthy TGTGCCAGCAGCTCCGGACAGGCCTACGAGCAGTACTTC CASSSGQAYEQYF TRBV7-8*01 TRBJ2-7*01 13.0 813.0 _CASSSGQAYEQYF 49 5318 EBNA3A-193-201 EBV 0.93 1022 NEG 162 5156 8 EBV EBNA3A FLRGRAYGL effector memory T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-B*08:01 B2M MHCI -7033 chip0423_42896 10.01 10.05 Chip2 T1D_4 T1D TGTGCCAGCAGCTTAGCGGTCGGAGAAGGGCCCCAGCATTTT CASSLAVGEGPQHF TRBV7-9*01 TRBJ1-5*01 20.0 647.0 _CASSLAVGEGPQHF 113 4722 BZLF1-190-197 EBV 0.9 2156 BZLF1-190-197 215 4507 9 EBV BZLF1 RAKFKQLL effector memory T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-B*08:01 B2M MHCI -7034 chip0423_871280 14.04 11.83 Chip2 T1D_5 T1D TGTGCCAGCAGCTTATTAGGACGATCGAACACTGAAGCTTTCTTT CASSLLGRSNTEAFF TRBV7-9*01 TRBJ1-1*01 77.0 2187.0 _CASSLLGRSNTEAFF 8 2337 BZLF1-190-197 EBV 0.62 2156 NEG 202 2135 12 EBV BZLF1 RAKFKQLL effector T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-B*08:01 B2M MHCI -7035 chip0423_412945 13.14 7.08 Chip2 T1D_4 T1D TGTGCCAGCAGCTTAACGGTTCTGGCAGGTCCAAACACTGAAGCTTTCTTT CASSLTVLAGPNTEAFF TRBV7-3*01 TRBJ1-1*01 41.0 1182.0 _CASSLTVLAGPNTEAFF 32 5324 BZLF1-190-197 EBV 0.87 2156 BZLF1-190-197 181 5143 10 EBV BZLF1 RAKFKQLL effector memory T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-B*08:01 B2M MHCI -7036 chip0423_687517 -3.99 10.63 Chip2 T1D_4 T1D TGTGCTACGGACGCTACGAACAATGCAGGCAACATGCTCACCTTT CATDATNNAGNMLTF TRAV17*01 TRAJ39*01 127.0 4053.0 TGTGCCAGCAGCTTAGCCACCTATCAAGAGACCCAGTACTTC CASSLATYQETQYF TRBV7-2*01 TRBJ2-5*01 19.0 1329.0 CATDATNNAGNMLTF_CASSLATYQETQYF 1 5637 ZNT8-186-194 ZNT8 0.77 22 NEG 162 5475 2 HomoSapiens ZNT8 VAANIVLTV Naive T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*02:01 B2M MHCI -7037 chip0423_417385 4.96 9.65 Chip2 T1D_4 T1D TGTGCTGTCCCAGGAGGAAGCCAAGGAAATCTCATCTTT CAVPGGSQGNLIF TRAV8-3*01 TRAJ42*01 50.0 2790.0 TGTGCCAGCAGTTACTCAAGTACAGGGGAGTACTTC CASSYSSTGEYF TRBV6-2*01,TRBV6-3*01 TRBJ2-7*01 32.0 1773.0 CAVPGGSQGNLIF_CASSYSSTGEYF 20 6322 EBV-LMP1-1 EBV 0.86 237 NEG 209 6113 6 EBV LMP1 YLLEMLWRL central memory T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*02:01 B2M MHCI -7038 chip0423_131601 5.82 10.89 Chip2 T1D_4 T1D TGTGCTCTCGTGAATTATGGAGGAAGCCAAGGAAATCTCATCTTT CALVNYGGSQGNLIF TRAV19*01 TRAJ42*01 47.0 1990.0 TGTGCCGTCTGGAGGGACGGAGCCTACGAGCAGTACTTC CAVWRDGAYEQYF TRBV28*01 TRBJ2-7*01 27.0 2180.0 CALVNYGGSQGNLIF_CAVWRDGAYEQYF 13 7396 EBV-LMP1-1 EBV 0.67 237 NEG 166 7230 6 EBV LMP1 YLLEMLWRL central memory T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*02:01 B2M MHCI -7039 chip0423_434092 -3.08 9.09 Chip2 T1D_6 T1D TGTGCAATGAGTAAATCTAACTTTGGAAATGAGAAATTAACCTTT CAMSKSNFGNEKLTF TRAV12-3*01 TRAJ48*01 82.0 2696.0 TGTGCCAGCAGCCGTCCTAACTATGGCTACACCTTC CASSRPNYGYTF TRBV11-1*01 TRBJ1-2*01 35.0 2476.0 CAMSKSNFGNEKLTF_CASSRPNYGYTF 1 6044 PGT-178 PGT 0.88 1480 NEG 175 5869 2 HomoSapiens PGT LLAGIGTVPI Naive T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*02:01 B2M MHCI -7040 chip0423_277786 0.47 8.03 Chip2 T1D_4 T1D TGTGCTGCGGACCAGGCCGGAACTGCTCTGACCTTT CAADQAGTALTF TRAV17*01 TRAJ15*01 31.0 1898.0 TGTGCCAGCAGCCAAGGGGAGACACCTGAAGCTTTCTTT CASSQGETPEAFF TRBV3-1*01 TRBJ1-1*01 28.0 1446.0 CAADQAGTALTF_CASSQGETPEAFF 1 8109 PTPRN-HAR-8 PTPRN 0.56 13 NEG 137 7972 4 HomoSapiens PTPRN HARIKLKV Naive T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-B*08:01 B2M MHCI -7041 chip0423_153860 5.45 10.72 Chip2 T1D_4 T1D TGTGCCTATGGTCAGAATTTTGTCTTT CAYGQNFVF TRAV8-3*01 TRAJ26*01 10.0 1012.0 TGTGCCAGCAGCGCAGACAGCGATTATGGCTACACCTTC CASSADSDYGYTF TRBV9*01 TRBJ1-2*01 45.0 2967.0 CAYGQNFVF_CASSADSDYGYTF 8 6326 EBV-LMP1-1 EBV 0.6 237 NEG 183 6143 6 EBV LMP1 YLLEMLWRL central memory T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*02:01 B2M MHCI -7042 chip0423_124103 7.73 8.47 Chip2 T1D_4 T1D TGCATCCTGCCTCTTGCTGGTGGTACTAGCTATGGAAAGCTGACATTT CILPLAGGTSYGKLTF TRAV26-2*01 TRAJ52*01 20.0 935.0 TGTGCCAGCCGCTTAGGGCGCGCCTACGAGCAGTACTTC CASRLGRAYEQYF TRBV7-8*01 TRBJ2-7*01 5.0 199.0 CILPLAGGTSYGKLTF_CASRLGRAYEQYF 1 11840 EBV-LMP2A EBV 0.42 700 EBV-LMP2A 222 11618 8 EBV LMP2A CLGGLLTMV effector memory T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*02:01 B2M MHCI -7043 chip0423_872017 15.56 12.51 Chip2 T1D_6 T1D TGTGCAGGGAGTTATGGAGGAAGCCAAGGAAATCTCATCTTT CAGSYGGSQGNLIF TRAV25*01 TRAJ42*01 42.0 2050.0 TGTGCCAGTAGTATCCGCTCTACCGGGGAGCTGTCTTTT CASSIRSTGELSF TRBV19*01 TRBJ2-2*01 30.0 1923.0 CAGSYGGSQGNLIF_CASSIRSTGELSF 1 2354 M1 FLU 0.45 1250 M1 164 2190 12 InfluenzaA M1 GILGFVFTL effector T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*02:01 B2M MHCI -7044 chip0423_695763 11.87 7.46 Chip2 T1D_4 T1D TGTGCCTATGGTCAGAATTTTGTCTTT CAYGQNFVF TRAV8-3*01 TRAJ26*01 31.0 4105.0 TGTGCCAGCAGCGCAGACAGCGATTATGGCTACACCTTC CASSADSDYGYTF TRBV9*01 TRBJ1-2*01 52.0 3100.0 CAYGQNFVF_CASSADSDYGYTF 8 4408 EBV-LMP1-1 EBV 0.86 237 NEG 196 4212 10 EBV LMP1 YLLEMLWRL effector memory T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*02:01 B2M MHCI -7045 chip0423_648161 11.83 10.67 Chip2 T1D_5 T1D TGTGCAGCGGCGGAAACCTCCTACGACAAGGTGATATTT CAAAETSYDKVIF TRAV13-1*01 TRAJ50*01 6.0 436.0 TGTGCCAGCCAACTAGCGGGAGGCACCGGGGAGCTGTTTTTT CASQLAGGTGELFF TRBV24-1*01 TRBJ2-2*01 31.0 1837.0 CAAAETSYDKVIF_CASQLAGGTGELFF 131 4249 BZLF1-190-197 EBV 0.62 2156 NEG 176 4073 9 EBV BZLF1 RAKFKQLL effector memory T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-B*08:01 B2M MHCI -7046 chip0423_457910 16.59 11.12 Chip2 T1D_5 T1D TGTGCCAGCCAACTAGCGGGAGGCACCGGGGAGCTGTTTTTT CASQLAGGTGELFF TRBV24-1*01 TRBJ2-2*01 17.0 689.0 _CASQLAGGTGELFF 69 3919 BZLF1-190-197 EBV 0.64 2156 NEG 171 3748 12 EBV BZLF1 RAKFKQLL effector T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-B*08:01 B2M MHCI -7047 chip0423_782802 -3.17 8.89 Chip2 T1D_4 T1D TGTGCCCCCCTCCATCCTCCGGGAGCCCAGAAGCTGGTATTT CAPLHPPGAQKLVF TRAV17*01 TRAJ54*01 29.0 1328.0 CAPLHPPGAQKLVF_ 1 5865 MART1-A28L MART1 0.73 84 MART1-A28L 165 5700 2 HomoSapiens MART1 ALGIGILTV Naive T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*02:01 B2M MHCI -7048 chip0423_359342 16.07 11.89 Chip2 T1D_6 T1D TGTGCTGTGAGAGAATATGGAAACAAACTGGTCTTT CAVREYGNKLVF TRAV1-2*01 TRAJ47*01 15.0 1017.0 CAVREYGNKLVF_ 2 2788 NP380-388 FLU 0.44 60 NEG 187 2601 12 InfluenzaA NP ELRSRYWAI effector T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-B*08:01 B2M MHCI -7049 chip0423_226500 0.23 6.55 Chip2 T1D_6 T1D TGTGCCGTGAGAATCGGTAACCAGTTCTATTTT CAVRIGNQFYF TRAV12-2*01 TRAJ49*01 1.0 62.0 TGAGCAGCAAGCTCGCCCAAGCAGACACGATCATCTAT *AASSPa?aADTIIY TRAV29/DV5*01 TRAJ30*01 3.0 341.0 0.75 TGTGCCAGCGGAGGGGGTATCGGGAACACTGAAGCTTTCTTT CASGGGIGNTEAFF TRBV28*01 TRBJ1-1*01 6.0 289.0 CAVRIGNQFYF_CASGGGIGNTEAFF 1 9733 PTPRN-SPM-8 PTPRN 0.7 1 PTPRN-SPM-8 167 9566 3 HomoSapiens PTPRN SPMRSVLL Naive T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-B*08:01 B2M MHCI -7050 chip0423_175774 13.51 9.68 Chip2 T1D_6 T1D TGCATCCTCCCACTTGCTGGTGGTACTAGCTATGGAAAGCTGACATTT CILPLAGGTSYGKLTF TRAV26-2*01 TRAJ52*01 19.0 750.0 TGTGCCAGCAGCTTGGGACAGGCCTACGAGCAGTACTTC CASSLGQAYEQYF TRBV7-8*01 TRBJ2-7*01 11.0 619.0 CILPLAGGTSYGKLTF_CASSLGQAYEQYF 308 4691 EBNA3A-193-201 EBV 0.75 1022 NEG 208 4483 10 EBV EBNA3A FLRGRAYGL effector memory T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-B*08:01 B2M MHCI -7051 chip0423_49045 -1.69 10.2 Chip2 T1D_4 T1D TGTGCAATGCTTTTATCTAACTTTGGAAATGAGAAATTAACCTTT CAMLLSNFGNEKLTF TRAV12-3*01 TRAJ48*01 77.0 3122.0 TGTGCCATCAGTGAGCTCACAGGGGGCGTGAACTATGGCTACACCTTC CAISELTGGVNYGYTF TRBV10-3*01 TRBJ1-2*01 95.0 3869.0 CAMLLSNFGNEKLTF_CAISELTGGVNYGYTF 1 5082 PGT-178 PGT 0.63 1480 PGT-178 181 4901 3 HomoSapiens PGT LLAGIGTVPI Naive T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*02:01 B2M MHCI -7052 chip0423_832188 -2.72 9.08 Chip2 T1D_6 T1D TGTGCCAGCAGCCCCCCGGACGGAGGAGTGTACGAGCAGTACTTC CASSPPDGGVYEQYF TRBV9*01 TRBJ2-7*01 24.0 1395.0 _CASSPPDGGVYEQYF 1 6067 POL-132-140 HIV 0.85 37 POL-132-140 170 5897 3 HIV-1 POL LVGPTPVNI Naive T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*02:01 B2M MHCI -7053 chip0423_238094 9.58 9.39 Chip2 T1D_5 T1D TGTGCAGCTACCGAAACCTCCTACGACAAGGTGATATTT CAATETSYDKVIF TRAV13-1*01 TRAJ50*01 18.0 2028.0 TGTGCCAGCAGCCTCCTCGGACAGAAAAGCGGAAACACCATATATTTT CASSLLGQKSGNTIYF TRBV7-9*01 TRBJ1-3*01 15.0 499.0 CAATETSYDKVIF_CASSLLGQKSGNTIYF 1 6814 BZLF1-190-197 EBV 0.64 2156 BZLF1-190-197 169 6645 8 EBV BZLF1 RAKFKQLL effector memory T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-B*08:01 B2M MHCI -7054 chip0423_514403 12.93 12.8 Chip2 T1D_4 T1D TGCATCGTCAGAGAGGGAGGAGGTGCTGACGGACTCACCTTT CIVREGGGADGLTF TRAV26-1*01 TRAJ45*01 14.0 737.0 TGTGCCAGCAGCTTAGCGGTCGGAGAAGGGCCCCAGCATTTT CASSLAVGEGPQHF TRBV7-9*01 TRBJ1-5*01 56.0 1853.0 CIVREGGGADGLTF_CASSLAVGEGPQHF 68 3149 BZLF1-190-197 EBV 1.0 2156 BZLF1-190-197 165 2984 11 EBV BZLF1 RAKFKQLL effector T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-B*08:01 B2M MHCI -7055 chip0423_80813 10.64 10.52 Chip2 T1D_6 T1D TGTGCTGTGAGACCTTCGATAATGCAGGCAACATGCTCACCTTT CAVRPSIa?tAGNMLTF TRAV3*01 TRAJ39*01 1.0 32.0 TGCAGCGTGGGGACAGGGGGCACTAATGAAAAACTGTTTTTT CSVGTGGTNEKLFF TRBV29-1*01 TRBJ1-4*01 7.0 312.0 CAVRPSIa?tAGNMLTF_CSVGTGGTNEKLFF 7 7705 EBV-BLMF1 EBV 0.43 2531 NEG 200 7505 9 EBV BLMF1 GLCTLVAML effector memory T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*02:01 B2M MHCI -7056 chip0423_446157 -3.64 11.14 Chip2 T1D_4 T1D TGTGCTGTGAGACCCATTTCAGGAGGAAGCTACATACCTACATTT CAVRPISGGSYIPTF TRAV3*01 TRAJ6*01 30.0 1155.0 CAVRPISGGSYIPTF_ 1 5487 EBV-BRLF1 EBV 0.44 1264 NEG 165 5322 1 EBV BRLF1 YVLDHLIVV Naive T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*02:01 B2M MHCI -7057 chip0423_386730 11.79 6.9 Chip2 T1D_6 T1D TGCATCCTCCCACTTGCTGGTGGTCCTCGCTATGGAAAACTGACATTT CILPLAGGPRYGKLTF TRAV26-2*01 TRAJ52*01 44.0 2030.0 TGTGCAGCAAGCAAGATAGAGGAGGAGGTGCTGACGGACTCACCTTT CAASKIEga?GGADGLTF TRAV23/DV6*01 TRAJ45*01 53.0 2070.0 0.49 TGTGCCAGCAGCTTGGGACAGGCCTACGAGCAGTACTTC CASSLGQAYEQYF TRBV7-8*01 TRBJ2-7*01 21.0 1279.0 CILPLAGGPRYGKLTF_CASSLGQAYEQYF 2 6015 EBNA3A-193-201 EBV 0.6 1022 EBNA3A-193-201 220 5795 10 EBV EBNA3A FLRGRAYGL effector memory T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-B*08:01 B2M MHCI -7058 chip0423_259186 10.52 8.02 Chip2 T1D_5 T1D _ 6746 4658 BZLF1-190-197 EBV 0.62 2156 NEG 188 4470 10 EBV BZLF1 RAKFKQLL effector memory T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-B*08:01 B2M MHCI -7059 chip0423_419997 13.21 7.95 Chip2 T1D_5 T1D TGTGCTAGTGGTCCGGACATATCCTACTCCTACGAGCAGTACTTC CASGPDISYSYEQYF TRBV12-5*01 TRBJ2-7*01 34.0 2112.0 _CASGPDISYSYEQYF 10 3474 BZLF1-190-197 EBV 0.62 2156 BZLF1-190-197 185 3289 10 EBV BZLF1 RAKFKQLL effector memory T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-B*08:01 B2M MHCI -7060 chip0423_212710 15.31 11.75 Chip2 T1D_5 T1D TGTGCAGCGGCGGAAACCTCCTACGACAAGGTGATATTT CAAAETSYDKVIF TRAV13-1*01 TRAJ50*01 17.0 1979.0 CAAAETSYDKVIF_ 32 1903 BZLF1-190-197 EBV 0.67 2156 NEG 172 1731 12 EBV BZLF1 RAKFKQLL effector T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-B*08:01 B2M MHCI -7061 chip0423_51269 -0.84 6.8 Chip2 T1D_5 T1D _ 6746 6072 GAD2-MMI-8 GAD65 0.82 40 GAD2-MMI-8 160 5912 3 HomoSapiens GAD2 MMIARFKM Naive T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-B*08:01 B2M MHCI -7062 chip0423_883205 9.11 8.95 Chip2 T1D_4 T1D TGTGCCAGCAGCTTAGCGGTCGGAGAAGGGCCCCAGCATTTT CASSLAVGEGPQHF TRBV7-9*01 TRBJ1-5*01 10.0 300.0 _CASSLAVGEGPQHF 113 5264 BZLF1-190-197 EBV 1.0 2156 BZLF1-190-197 188 5076 8 EBV BZLF1 RAKFKQLL effector memory T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-B*08:01 B2M MHCI -7063 chip0423_112740 6.08 9.33 Chip2 T1D_4 T1D TGTGCTACCTCGGGCCCCTCAGCATACAGCACCCTCACCTTT CATSGPSAYSTLTF TRAV17*01 TRAJ11*01 34.0 1948.0 TGTGCAGAGGGCTTAAGGTACCGGTAACCAGTTCTATTTT CAEGLRta??ccGNQFYF TRAV13-2*01 TRAJ49*01 20.0 2007.0 0.29 TGTGCCAGCAGCCTCCAGGGCGGGAACATTCAGTACTTC CASSLQGGNIQYF TRBV6-1*01 TRBJ2-4*01 17.0 658.0 CATSGPSAYSTLTF_CASSLQGGNIQYF 1 11075 EBV-LMP2-FLY EBV 0.86 355 NEG 191 10884 6 EBV LMP2 FLYALALLL central memory T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*02:01 B2M MHCI -7064 chip0423_592125 5.82 12.82 Chip2 T1D_4 T1D TGTGCAGGAGCAGCGGGTTGCAACACAGGCAAACTAATCTCT CAGAAGCNTGKLIS TRAV27*01 TRAJ37*01 8.0 82.0 TGTGCCAGTAGTATAAGAAGCTCCTACGAGCAGTACTTC CASSIRSSYEQYF TRBV19*01 TRBJ2-7*01 12.0 401.0 CAGAAGCNTGKLIS_CASSIRSSYEQYF 1 7360 M1 FLU 0.71 1250 M1 183 7177 7 InfluenzaA M1 GILGFVFTL transitional T cells between effector and memory populations PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*02:01 B2M MHCI -7065 chip0423_46591 -1.17 7.55 Chip2 T1D_5 T1D TGTGCCAGCACGGTCGGGGGGCCACTAGCCAAAAACATTCAGTACTTC CASTVGGPLAKNIQYF TRBV6-2*01,TRBV6-3*01 TRBJ2-4*01 36.0 1379.0 _CASTVGGPLAKNIQYF 1 9669 NP30-38 FLU 0.54 72 NP30-38 179 9490 3 InfluenzaA NP RPIIRPATL Naive T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-B*08:01 B2M MHCI -7066 chip0423_540663 11.54 8.86 Chip2 T1D_6 T1D TGTGCAGCAGCGGAAACCTCCTACGACAAGGTGATATTT CAAAETSYDKVIF TRAV13-1*01 TRAJ50*01 2.0 171.0 TGTGCCAGCAGCTTGGGACAGGCCTACGAGCAGTACTTC CASSLGQAYEQYF TRBV7-8*01 TRBJ2-7*01 13.0 562.0 CAAAETSYDKVIF_CASSLGQAYEQYF 1 3595 EBNA3A-193-201 EBV 0.4 1022 NEG 183 3412 10 EBV EBNA3A FLRGRAYGL effector memory T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-B*08:01 B2M MHCI -7067 chip0423_711700 13.41 10.31 Chip2 T1D_5 T1D TGTGCCAGCCAACTAGCGGGAGGCACCGGGGAGCTGTTTTTT CASQLAGGTGELFF TRBV24-1*01 TRBJ2-2*01 22.0 1166.0 _CASQLAGGTGELFF 69 4990 BZLF1-190-197 EBV 0.86 2156 NEG 194 4796 9 EBV BZLF1 RAKFKQLL effector memory T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-B*08:01 B2M MHCI -7068 chip0423_254962 10.68 11.55 Chip2 T1D_6 T1D TGCAGCGCCGGCAGGGACGGGACTAATGAAAAACTGTTTTTT CSAGRDGTNEKLFF TRBV29-1*01 TRBJ1-4*01 189.0 6537.0 _CSAGRDGTNEKLFF 159 4172 EBV-BLMF1 EBV 0.6 2531 NEG 212 3960 9 EBV BLMF1 GLCTLVAML effector memory T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*02:01 B2M MHCI -7069 chip0423_118806 15.95 9.91 Chip2 T1D_5 T1D TGTGCAGCAATGGAAACCTCCTACGACAAGGTGATATTT CAAMETSYDKVIF TRAV13-1*01 TRAJ50*01 16.0 881.0 TGTGCCACCAGTGAAATGGGGGGATCTGAAGCTTTCTTT CATSEMGGSEAFF TRBV24-1*01 TRBJ1-1*01 32.0 1331.0 CAAMETSYDKVIF_CATSEMGGSEAFF 1 4077 BZLF1-190-197 EBV 0.45 2156 NEG 200 3877 12 EBV BZLF1 RAKFKQLL effector T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-B*08:01 B2M MHCI -7070 chip0423_612332 11.99 10.79 Chip2 T1D_5 T1D TGTGCAGAAAAAGAAACCTCCTACGACAAGGCGATATTT CAEKETSYDKAIF TRAV13-1*01 TRAJ50*01 22.0 2041.0 TGTGCCAGCAGCTTATCAGGACGATCGAACACTGAAGCTTTCTTT CASSLSGRSNTEAFF TRBV7-9*01 TRBJ1-1*01 17.0 552.0 CAEKETSYDKAIF_CASSLSGRSNTEAFF 1 5159 BZLF1-190-197 EBV 0.6 2156 BZLF1-190-197 197 4962 9 EBV BZLF1 RAKFKQLL effector memory T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-B*08:01 B2M MHCI -7071 chip0423_255991 5.63 11.17 Chip2 T1D_6 T1D TGCGCCAGCAGTGACATTAGGGAGGGGCAGGGTGAAGCTTTCTTT CASSDIREGQGEAFF TRBV10-2*01 TRBJ1-1*01 23.0 669.0 _CASSDIREGQGEAFF 37 7155 EBNA3A-158-166 EBV 0.92 444 NEG 204 6951 6 EBV EBNA3A QAKWRLQTL central memory T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-B*08:01 B2M MHCI -7072 chip0423_837098 10.95 12.02 Chip2 T1D_4 T1D TGTGCCAGCAGCTTAGCGGTCGGAGAAGGGCCCCAGCATTTT CASSLAVGEGPQHF TRBV7-9*01 TRBJ1-5*01 32.0 1242.0 _CASSLAVGEGPQHF 113 3644 BZLF1-190-197 EBV 0.84 2156 BZLF1-190-197 212 3432 9 EBV BZLF1 RAKFKQLL effector memory T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-B*08:01 B2M MHCI -7073 chip0423_711672 14.96 10.91 Chip2 T1D_5 T1D TGTGCCAGCCAACTAGCGGGAGGCACCGGGGAGCTGTTTTTT CASQLAGGTGELFF TRBV24-1*01 TRBJ2-2*01 47.0 2472.0 _CASQLAGGTGELFF 69 3038 BZLF1-190-197 EBV 0.62 2156 NEG 174 2864 12 EBV BZLF1 RAKFKQLL effector T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-B*08:01 B2M MHCI -7074 chip0423_676668 5.03 10.54 Chip2 healthy_4 healthy TGCATCGTCAGCGACTTCTATAACCAGGGAGGAAAGCTTATCTTC CIVSDFYNQGGKLIF TRAV26-1*01 TRAJ23*01 1.0 10.0 TGTGCCAGCAGTTTAATAGCGGGGGTGTACTACAATGAGCAGTTCTTC CASSLIAGVYYNEQFF TRBV27*01 TRBJ2-1*01 19.0 1123.0 CIVSDFYNQGGKLIF_CASSLIAGVYYNEQFF 1 3460 EBNA3A-158-166 EBV 0.89 444 NEG 172 3288 6 EBV EBNA3A QAKWRLQTL central memory T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-B*08:01 B2M MHCI -7075 chip0423_720122 -0.7 10.6 Chip2 T1D_5 T1D TGTGCTGTAAATTCTGCTGGCAACAACCGTAAGCTGATTTGG CAVNSAGNNRKLIW TRAV21*01 TRAJ38*01 17.0 889.0 CAVNSAGNNRKLIW_ 1 6230 GAD2-RMM-9 GAD65 0.7 9 GAD2-RMM-9 162 6068 3 HomoSapiens GAD2 RMMEYGTTM Naive T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-B*08:01 B2M MHCI -7076 chip0423_426108 -3.08 10.91 Chip2 T1D_6 T1D TGTGCCAGCAGTTTTGCGCTACAGGGCATAGCTTTTCTTT CASSFAct??acRA*LFF TRBV28*01 TRBJ1-1*01 33.0 1982.0 _CASSFAct??acRA*LFF 1 6075 PGT-178 PGT 0.73 1480 PGT-178 182 5893 1 HomoSapiens PGT LLAGIGTVPI Naive T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*02:01 B2M MHCI -7077 chip0423_209103 15.4 10.79 Chip2 T1D_5 T1D TGCGCCAGCAGCCTCAGTTCGGGGGGCCGTGGCGAGCAGTACTTC CASSLSSGGRGEQYF TRBV4-1*01 TRBJ2-7*01 6.0 279.0 _CASSLSSGGRGEQYF 11 3385 BZLF1-190-197 EBV 0.5 2156 NEG 184 3201 12 EBV BZLF1 RAKFKQLL effector T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-B*08:01 B2M MHCI -7078 chip0423_358154 6.68 12.7 Chip2 T1D_4 T1D TGTGCTTCTGGTTCTGCAAGGCAACTGACCTTT CASGSARQLTF TRAV12-1*01 TRAJ22*01 5.0 574.0 TGTGCCAGTAGCCCCGGGCCAGACCTATACGCGCAGTACTTC CASSPGPDLYAQYF TRBV19*01 TRBJ2-7*01 4.0 132.0 CASGSARQLTF_CASSPGPDLYAQYF 1 4472 PGT-178 PGT 0.71 1480 NEG 190 4282 7 HomoSapiens PGT LLAGIGTVPI transitional T cells between effector and memory populations PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*02:01 B2M MHCI -7079 chip0423_349003 13.34 6.72 Chip2 healthy_4 healthy TGCTCCCTTCCCCTAGCTGGTGGTACTAGCTATGGAAAGCTGACATTT CSLPLAGGTSYGKLTF TRAV4*01,TRAV26-2*01 TRAJ52*01 51.0 2373.0 TGTGCCAGCAGCTCCGGACAGGCCTACGAGCAGTACTTC CASSSGQAYEQYF TRBV7-8*01 TRBJ2-7*01 17.0 1181.0 CSLPLAGGTSYGKLTF_CASSSGQAYEQYF 1 3857 EBNA3A-193-201 EBV 0.78 1022 NEG 183 3674 10 EBV EBNA3A FLRGRAYGL effector memory T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-B*08:01 B2M MHCI -7080 chip0423_103276 14.46 10.93 Chip2 T1D_5 T1D TGTGCCAGCCAACTAGCGGGAGGCACCGGGGAGCTGTTTTTT CASQLAGGTGELFF TRBV24-1*01 TRBJ2-2*01 7.0 259.0 _CASQLAGGTGELFF 69 3067 BZLF1-190-197 EBV 0.67 2156 NEG 175 2892 12 EBV BZLF1 RAKFKQLL effector T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-B*08:01 B2M MHCI -7081 chip0423_644611 -2.31 8.9 Chip2 T1D_5 T1D _ 6746 6985 INS-LWM-8 INS 0.62 11 NEG 150 6835 3 HomoSapiens INS LWMRLLPL Naive T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-B*08:01 B2M MHCI -7082 chip0423_441958 14.11 8.02 Chip2 T1D_5 T1D TGTGCAGCAACGGAAACCTCCTACGACAAGGTGATATTT CAATETSYDKVIF TRAV13-1*01 TRAJ50*01 40.0 2798.0 TGTGCCAGCAGTCCCCCGGGGAGAAATGAAAAACTGTTTTTT CASSPPGRNEKLFF TRBV12-3*01,TRBV12-4*01 TRBJ1-4*01 82.0 2985.0 CAATETSYDKVIF_CASSPPGRNEKLFF 34 3262 BZLF1-190-197 EBV 0.86 2156 NEG 168 3094 10 EBV BZLF1 RAKFKQLL effector memory T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-B*08:01 B2M MHCI -7083 chip0423_171296 -0.56 8.89 Chip2 T1D_6 T1D TGTGCCGTGAACATCGGTAGCAACTATCAGTTAATCTGG CAVNIGSNYQLIW TRAV12-2*01 TRAJ33*01 26.0 1739.0 TGTGCCAGTCAAACAGGGGCCGGCTACACCTTC CASQTGAGYTF TRBV6-5*01 TRBJ1-2*01 17.0 700.0 CAVNIGSNYQLIW_CASQTGAGYTF 1 7743 MART1-ALA MART1 0.57 269 NEG 194 7549 3 HomoSapiens MART1 ALAGIGILTV Naive T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*02:01 B2M MHCI -7084 chip0423_105882 -2.22 8.27 Chip2 T1D_4 T1D TGTGCAATGAGCTTATCTAACTTTGGAAATGAGAAATTAACCCTT CAMSLSNFGNEKLTL TRAV12-3*01 TRAJ48*01 18.0 694.0 TGTGCCAGCAGCTTAGCCGGAGGCGAAGACACCGGGGAGCTGTTTTTT CASSLAGGEDTGELFF TRBV7-2*01 TRBJ2-2*01 62.0 2323.0 CAMSLSNFGNEKLTL_CASSLAGGEDTGELFF 1 6996 PGT-178 PGT 0.86 1480 PGT-178 155 6841 2 HomoSapiens PGT LLAGIGTVPI Naive T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*02:01 B2M MHCI -7085 chip0423_588418 6.92 10.79 Chip2 T1D_6 T1D TGTGCCAGCAGCTTAGCGGGTCGTGAGGGTACGCAGTATTTT CASSLAGREGTQYF TRBV11-3*01 TRBJ2-3*01 25.0 1313.0 _CASSLAGREGTQYF 13 7778 NP380-388 FLU 0.56 60 NEG 152 7626 7 InfluenzaA NP ELRSRYWAI transitional T cells between effector and memory populations PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-B*08:01 B2M MHCI -7086 chip0423_442636 -1.69 7.3 Chip2 T1D_5 T1D TGTGCCAGCCTGGGCCCTACACCTGAAGCTTTCTTT CASLGPTPEAFF TRBV6-1*01 TRBJ1-1*01 3.0 171.0 _CASLGPTPEAFF 1 7744 IAPP-ILK-8 IAPP 0.67 20 IAPP-ILK-8 185 7559 3 HomoSapiens IAPP ILKLQVFL Naive T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-B*08:01 B2M MHCI -7087 chip0423_419002 13.49 13.5 Chip2 T1D_5 T1D TGTGCAGCAAGTGAAACCTCCTACGACAAGGTGATATTT CAASETSYDKVIF TRAV13-1*01 TRAJ50*01 19.0 1119.0 TGTGCCAGCTCACCACCGGGTGGGGGCAACACCGGGGAGCTGTTTTTT CASSPPGGGNTGELFF TRBV18*01 TRBJ2-2*01 3.0 148.0 CAASETSYDKVIF_CASSPPGGGNTGELFF 1 1635 BZLF1-190-197 EBV 0.44 2156 NEG 200 1435 11 EBV BZLF1 RAKFKQLL effector T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-B*08:01 B2M MHCI -7088 chip0423_567712 15.06 9.42 Chip2 T1D_6 T1D TGCATCCTCCCACTTGCTGGTGGTACTAGCTATGGAAAGCTGACATTT CILPLAGGTSYGKLTF TRAV26-2*01 TRAJ52*01 76.0 3372.0 TGTGCCAGCAGCTTGGGACAGGCCTACGAGCAGTACTTC CASSLGQAYEQYF TRBV7-8*01 TRBJ2-7*01 17.0 995.0 CILPLAGGTSYGKLTF_CASSLGQAYEQYF 308 5144 EBNA3A-193-201 EBV 0.78 1022 NEG 182 4962 12 EBV EBNA3A FLRGRAYGL effector T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-B*08:01 B2M MHCI -7089 chip0423_119659 7.22 10.69 Chip2 T1D_6 T1D TGTGCCAGCAGCCCGGGGTCCTCTAATTCACCCCTCCACTTT CASSPGSSNSPLHF TRBV6-1*01 TRBJ1-6*01 18.0 543.0 _CASSPGSSNSPLHF 1 5547 ROTA-VP6 ROTA 0.45 47 NEG 160 5387 7 RotavirusA VP6 TLLANVTAV transitional T cells between effector and memory populations PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*02:01 B2M MHCI -7090 chip0423_216430 13.09 10.25 Chip2 T1D_4 T1D TGCATCGTCAGAGAGGGAGGAGGTGCTGACGGACTCACCTTT CIVREGGGADGLTF TRAV26-1*01 TRAJ45*01 63.0 3480.0 TGTGCCAGCAGCTTAGCGGTCGGAGAAGGGCCCCAGCATTTT CASSLAVGEGPQHF TRBV7-9*01 TRBJ1-5*01 42.0 1664.0 CIVREGGGADGLTF_CASSLAVGEGPQHF 68 4945 BZLF1-190-197 EBV 0.82 2156 BZLF1-190-197 176 4769 9 EBV BZLF1 RAKFKQLL effector memory T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-B*08:01 B2M MHCI -7091 chip0423_574754 -1.43 8.4 Chip2 T1D_6 T1D TGTGCTGTGCAGTACTATAACACCGACAAGCTCATCTTT CAVQYYNTDKLIF TRAV20*01 TRAJ34*01 20.0 597.0 TGCGCCAGCAGCCTAAAGGACACAAATCAGCCCCAGCATTTT CASSLKDTNQPQHF TRBV4-1*01 TRBJ1-5*01 57.0 1256.0 CAVQYYNTDKLIF_CASSLKDTNQPQHF 1 6324 NP30-38 FLU 0.5 72 NEG 187 6137 3 InfluenzaA NP RPIIRPATL Naive T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-B*08:01 B2M MHCI -7092 chip0423_442937 5.78 10.79 Chip2 T1D_6 T1D TGCGCCAGCAGTGACATTAGGGAGGGGCAGGGTGAAGCTTTCTTT CASSDIREGQGEAFF TRBV10-2*01 TRBJ1-1*01 25.0 658.0 _CASSDIREGQGEAFF 37 9691 EBNA3A-158-166 EBV 0.89 444 EBNA3A-158-166 201 9490 6 EBV EBNA3A QAKWRLQTL central memory T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-B*08:01 B2M MHCI -7093 chip0423_119663 6.58 10.12 Chip2 T1D_6 T1D TGTGCAGCAAGCGCGGGGAATGCTGGTGGTACTCGCTGTGGACAGCTGACGTTT CAASAGNAGGTRCGQLTF TRAV29/DV5*01 TRAJ52*01 4.0 140.0 TGCGCCAGCAGTGACATTAGGGAGGGGCAGGGTGAAGCTTTCTTT CASSDIREGQGEAFF TRBV10-2*01 TRBJ1-1*01 2.0 70.0 CAASAGNAGGTRCGQLTF_CASSDIREGQGEAFF 1 10072 EBNA3A-158-166 EBV 0.71 444 NEG 216 9856 6 EBV EBNA3A QAKWRLQTL central memory T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-B*08:01 B2M MHCI -7094 chip0423_329337 -1.15 9.58 Chip2 T1D_5 T1D TGTGCCAGCAGTCCGGGGCAAGTCCGTTCCTACAATGAGCAGTTCTTC CASSPGQVRSYNEQFF TRBV5-6*01 TRBJ2-1*01 90.0 3627.0 _CASSPGQVRSYNEQFF 1 4876 Nef13-20 HIV 0.92 19 NEG 171 4705 3 HIV-1 Nef WPTVRERM Naive T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-B*08:01 B2M MHCI -7095 chip0423_253763 -3.12 8.54 Chip2 T1D_5 T1D TGCGCCAGCAGCCAAGATACTAGCGGGAGGGAGACCCAGTACTCC CASSQDTSGRETQYS TRBV4-1*01 TRBJ2-5*01 46.0 1285.0 _CASSQDTSGRETQYS 1 4882 INS-MAL-8 INS 0.67 38 INS-MAL-8 174 4708 2 HomoSapiens INS MALWMRLL Naive T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-B*08:01 B2M MHCI -7096 chip0423_96185 10.45 9.87 Chip2 T1D_5 T1D TGTGCAGAGATGGAAACCTCCTACGACAAGGTGATATTT CAEMETSYDKVIF TRAV13-2*01 TRAJ50*01 20.0 1910.0 TGTGCCAGCAGCGCCGGGACATGGGCAAACTATGGCTACACCTTC CASSAGTWANYGYTF TRBV3-1*01 TRBJ1-2*01 4.0 119.0 CAEMETSYDKVIF_CASSAGTWANYGYTF 1 4437 BZLF1-190-197 EBV 0.48 2156 NEG 206 4231 9 EBV BZLF1 RAKFKQLL effector memory T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-B*08:01 B2M MHCI -7097 chip0423_300351 13.99 10.75 Chip2 T1D_5 T1D TGTGCAGCGGCGGAAACCTCCTACGACAAGGTGATATTT CAAAETSYDKVIF TRAV13-1*01 TRAJ50*01 10.0 988.0 TGTGCCAGCCAACTAGCGGGAGGCACCGGGGAGCTGTTTTTT CASQLAGGTGELFF TRBV24-1*01 TRBJ2-2*01 2.0 91.0 CAAAETSYDKVIF_CASQLAGGTGELFF 131 2793 BZLF1-190-197 EBV 0.55 2156 NEG 187 2606 12 EBV BZLF1 RAKFKQLL effector T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-B*08:01 B2M MHCI -7098 chip0423_131064 7.67 11.52 Chip2 T1D_6 T1D TGTGCTCTGAGTGCGGGGAACTATGGTCAGAATTTTGTCTTT CALSAGNYGQNFVF TRAV19*01 TRAJ26*01 2.0 21.0 CALSAGNYGQNFVF_ 1 5329 NP44-52 FLU 0.98 474 NP44-52 171 5158 7 InfluenzaA NP CTELKLSDY transitional T cells between effector and memory populations PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*01:01 B2M MHCI -7099 chip0423_655090 -1.12 9.38 Chip2 T1D_6 T1D TGTGCTTATACGAGCGCGTCGTACCGCGTTGACTAGATCGTCTTT CAYTSASYRVD*IVF TRAV38-2/DV8*01 TRAJ30*01 6.0 191.0 TGCGCCAGCAGCCAAGGCGGAGGGCTTAACTATGGCTACACCTTC CASSQGGGLNYGYTF TRBV4-1*01 TRBJ1-2*01 35.0 1385.0 CAYTSASYRVD*IVF_CASSQGGGLNYGYTF 1 6323 GAD65-114-122 GAD65 0.46 63 GAD65-114-122 164 6159 3 HomoSapiens GAD65 VMNILLQYV Naive T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*02:01 B2M MHCI -7100 chip0423_513220 11.37 10.12 Chip2 T1D_4 T1D TGCATCCTGCCTCTTGCTGGTGGTACTAGCTATGGAAAGCTGACATTT CILPLAGGTSYGKLTF TRAV26-2*01 TRAJ52*01 24.0 1303.0 TGTGCCAGCAGCTTAGGGCAAGCCTACGAGCAGTACTTC CASSLGQAYEQYF TRBV7-8*01 TRBJ2-7*01 19.0 1073.0 CILPLAGGTSYGKLTF_CASSLGQAYEQYF 308 4745 EBNA3A-193-201 EBV 0.77 1022 EBNA3A-193-201 181 4564 9 EBV EBNA3A FLRGRAYGL effector memory T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-B*08:01 B2M MHCI -7101 chip0423_401584 11.85 13.7 Chip2 T1D_4 T1D TCCATCGTCAGAGAGGGCGGCGGTGCTGGCGGCCTCTCCTTT SIVREGGGAGGLSF TRAV26-1*01 TRAJ45*01 5.0 263.0 TGTGCCAGCAGCTTAGCGGTCGGAGAAGGGCCCCAGCATTTT CASSLAVGEGPQHF TRBV7-9*01 TRBJ1-5*01 21.0 948.0 SIVREGGGAGGLSF_CASSLAVGEGPQHF 1 1638 BZLF1-190-197 EBV 1.0 2156 NEG 209 1429 11 EBV BZLF1 RAKFKQLL effector T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-B*08:01 B2M MHCI -7102 chip0423_42224 -0.24 7.71 Chip2 healthy_4 healthy TGCGCCAGCAGCCCCCTAGCGGGGGACGAGCAGTTCTTC CASSPLAGDEQFF TRBV4-3*01 TRBJ2-1*01 38.0 2847.0 _CASSPLAGDEQFF 1 10714 GP160-311-320 HIV 1.0 109 NEG 173 10541 4 HIV-1 GP160 RGPGRAFVTI Naive T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*02:01 B2M MHCI -7103 chip0423_154413 12.25 7.06 Chip2 T1D_4 T1D TGTGCCAGCAGCCAAGTCAACAACCCGGGGGATGGCTACACCTTC CASSQVNNPGDGYTF TRBV14*01 TRBJ1-2*01 10.0 334.0 _CASSQVNNPGDGYTF 94 5012 EBNA3A-158-166 EBV 0.83 444 NEG 165 4847 10 EBV EBNA3A QAKWRLQTL effector memory T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-B*08:01 B2M MHCI -7104 chip0423_695299 6.49 14.49 Chip2 T1D_5 T1D TGTGCAGGATTCCCGTGGGCTGCAGGCAACAAGCTAACTTTT CAGFPWAAGNKLTF TRAV25*01 TRAJ17*01 26.0 1712.0 TGTGCCAGTAGTATGATGACAGGGGATTCCTATAATTCACCCCTCCACTTT CASSMMTGDSYNSPLHF TRBV19*01 TRBJ1-6*01 65.0 2035.0 CAGFPWAAGNKLTF_CASSMMTGDSYNSPLHF 2 6115 NP44-52 FLU 0.78 474 NP44-52 192 5923 7 InfluenzaA NP CTELKLSDY transitional T cells between effector and memory populations PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*01:01 B2M MHCI -7105 chip0423_463592 7.62 9.8 Chip2 healthy_3 healthy TGTGCCAGCACGGGGACTAGCGATAGCACAGATACGCAGTATTTT CASTGTSDSTDTQYF TRBV2*01 TRBJ2-3*01 58.0 2123.0 _CASTGTSDSTDTQYF 9 6690 NP44-52 FLU 0.72 474 NP44-52 173 6517 8 InfluenzaA NP CTELKLSDY effector memory T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*01:01 B2M MHCI -7106 chip0423_856360 -2.56 7.97 Chip2 T1D_5 T1D TGTGCCCCGCGCTCAGTTCCAAGATCATCTTT CAPRSg?tSKIIF TRAV8-1*01 TRAJ30*01 7.0 1162.0 TGTGCCAGCAGCCCCTTATCAGATACGCAGTATTTT CASSPLSDTQYF TRBV7-6*01 TRBJ2-3*01 12.0 1057.0 CAPRSg?tSKIIF_CASSPLSDTQYF 1 8440 BZLF1-190-197 EBV 0.56 2156 BZLF1-190-197 153 8287 2 EBV BZLF1 RAKFKQLL Naive T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-B*08:01 B2M MHCI -7107 chip0423_725968 -1.98 8.63 Chip2 T1D_6 T1D TGTGCCGTGAAGGATTCAGGATACAGCACCCTCACCTTT CAVKDSGYSTLTF TRAV12-2*01 TRAJ11*01 47.0 2797.0 TGCGCCAGCAGCCAAGGGACAGACCGTTCCTATGGCTACACCTTC CASSQGTDRSYGYTF TRBV4-1*01 TRBJ1-2*01 51.0 1718.0 CAVKDSGYSTLTF_CASSQGTDRSYGYTF 1 6936 GFAP-143-151 GFAP 0.73 5 NEG 158 6778 4 HomoSapiens GFAP NLAQDLATV Naive T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*02:01 B2M MHCI -7108 chip0423_629159 4.88 9.86 Chip2 T1D_4 T1D TGTGCTGTGCTCCAGGATAGCAACTATCAGTTAATCTGG CAVLQDSNYQLIW TRAV12-2*01 TRAJ33*01 35.0 2153.0 TGCGCCAGCAGTGATGACGGTATGAACACTGAAGCTTTCTTT CASSDDGMNTEAFF TRBV10-2*01 TRBJ1-1*01 39.0 1292.0 CAVLQDSNYQLIW_CASSDDGMNTEAFF 8 5066 EBV-LMP2A EBV 1.0 700 NEG 177 4889 6 EBV LMP2A CLGGLLTMV central memory T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*02:01 B2M MHCI -7109 chip0423_541763 -1.73 9.47 Chip2 T1D_5 T1D TGTGCTGTGGGAACAGGCTTTCAGAAACTTGTATTT CAVGTGFQKLVF TRAV8-4*01 TRAJ8*01 3.0 545.0 TGTGCCAGCAGCCCCCCTGATGGCAGGCCTGCTGAAGCTTTCTTT CASSPPDGRPAEAFF TRBV7-9*01 TRBJ1-1*01 38.0 1758.0 CAVGTGFQKLVF_CASSPPDGRPAEAFF 1 7322 NP140-148 FLU 0.45 102 NEG 173 7149 3 InfluenzaA NP HSNLNDATY Naive T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*01:01 B2M MHCI -7110 chip0423_241676 0.02 6.24 Chip2 T1D_5 T1D TGTGCCAGTACGGCGCTAGCGGGCCACACAGATACGCAGTATTTT CASTALAGHTDTQYF TRBV19*01 TRBJ2-3*01 8.0 237.0 _CASTALAGHTDTQYF 1 10708 NP225-233 FLU 0.47 23 NP225-233 189 10519 3 InfluenzaA NP ILKGKFQTA Naive T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-B*08:01 B2M MHCI -7111 chip0423_810433 12.92 13.19 Chip2 T1D_4 T1D TGTGCTGTGTGTGATGGAGAGGGGGCCCAGAGACTGGTATTT CAVCDGEGAQRLVF TRAV8-6*01 TRAJ54*01 11.0 315.0 TGTGCCGGCAGCTTAGCGGCTCTGGCAGGTCCAACCACGGAAGCGTTCTTT CAGSLAALAGPTTEAFF TRBV7-3*01 TRBJ1-1*01 3.0 234.0 CAVCDGEGAQRLVF_CAGSLAALAGPTTEAFF 1 3081 BZLF1-190-197 EBV 0.75 2156 BZLF1-190-197 198 2883 11 EBV BZLF1 RAKFKQLL effector T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-B*08:01 B2M MHCI -7112 chip0423_532994 14.85 10.62 Chip2 T1D_5 T1D TGTGCAGCGGCGGAAACCTCCTACGACAAGGTGATATTT CAAAETSYDKVIF TRAV13-1*01 TRAJ50*01 21.0 2057.0 CAAAETSYDKVIF_ 32 4779 BZLF1-190-197 EBV 0.9 2156 NEG 189 4590 12 EBV BZLF1 RAKFKQLL effector T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-B*08:01 B2M MHCI -7113 chip0423_730527 16.32 10.78 Chip2 healthy_3 healthy _ 6746 3212 M1 FLU 0.41 1250 NEG 182 3030 12 InfluenzaA M1 GILGFVFTL effector T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*02:01 B2M MHCI -7114 chip0423_510269 8.29 8.48 Chip2 T1D_5 T1D TGTGCAGAGAGGAATACTGGAGGCTTCAAAACTATCTTT CAERNTGGFKTIF TRAV13-2*01 TRAJ9*01 51.0 3009.0 CAERNTGGFKTIF_ 1 7633 ZNT8-YAK-9 ZNT8 0.7 59 NEG 184 7449 8 HomoSapiens ZNT8 YAKWKLCSA effector memory T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-B*08:01 B2M MHCI -7115 chip0423_439403 10.67 7.21 Chip2 T1D_4 T1D TGTGCCAGCAGCCAAGTCAACAACCCGGGGGATGGCTACACCTTC CASSQVNNPGDGYTF TRBV14*01 TRBJ1-2*01 10.0 193.0 _CASSQVNNPGDGYTF 94 4514 EBNA3A-158-166 EBV 0.42 444 NEG 188 4326 10 EBV EBNA3A QAKWRLQTL effector memory T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-B*08:01 B2M MHCI -7116 chip0423_339655 10.87 10.82 Chip2 T1D_4 T1D TGTGCCAGCAGCTTAACGGTTCTGGCAGGTCCAAACACTGAAGCTTTCTTT CASSLTVLAGPNTEAFF TRBV7-3*01 TRBJ1-1*01 38.0 1484.0 _CASSLTVLAGPNTEAFF 32 4512 BZLF1-190-197 EBV 0.98 2156 BZLF1-190-197 187 4325 9 EBV BZLF1 RAKFKQLL effector memory T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-B*08:01 B2M MHCI -7117 chip0423_862235 12.08 9.42 Chip2 T1D_4 T1D TGTGCCAGCAGCTTAACGGTTCTGGCAGGTCCAAACACTGAAGCTTTCTTT CASSLTVLAGPNTEAFF TRBV7-3*01 TRBJ1-1*01 26.0 652.0 _CASSLTVLAGPNTEAFF 32 3965 BZLF1-190-197 EBV 1.0 2156 BZLF1-190-197 166 3799 10 EBV BZLF1 RAKFKQLL effector memory T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-B*08:01 B2M MHCI -7118 chip0423_620503 9.17 8.55 Chip2 T1D_4 T1D TGTGCTTACTACCACGCCTCAGGCGGGTCTGAACAGCTGGTCTTT CAYYHASGGSEQLVF TRAV38-1*01 TRAJ57*01 3.0 89.0 TGTGCCAGCAGCTTAACGGTTCTGGCAGGTCCAAACACTGAAGCTTTCTTT CASSLTVLAGPNTEAFF TRBV7-3*01 TRBJ1-1*01 30.0 1130.0 CAYYHASGGSEQLVF_CASSLTVLAGPNTEAFF 1 5162 BZLF1-190-197 EBV 0.85 2156 BZLF1-190-197 180 4982 8 EBV BZLF1 RAKFKQLL effector memory T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-B*08:01 B2M MHCI -7119 chip0423_337313 -2.8 7.98 Chip2 T1D_6 T1D TGTGCTGTAAGAAGTTCTAACGACTACAAGCTCAGCTTT CAVRSSNDYKLSF TRAV21*01 TRAJ20*01 49.0 3213.0 TGTGCCAGCAGTCCAAGCGGGTGGGAGCAGTACTTC CASSPSGWEQYF TRBV12-3*01,TRBV12-4*01 TRBJ2-7*01 12.0 927.0 CAVRSSNDYKLSF_CASSPSGWEQYF 1 7087 MART1-26-35 MART1 0.6 3 NEG 183 6904 2 HomoSapiens MART1 EAAGIGILTV Naive T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*02:01 B2M MHCI -7120 chip0423_801514 16.07 11.15 Chip2 T1D_5 T1D TGTGCTCTGAACGCAATTATGGAGGAAGCCAAGGAAATCTCATCTTT CALNAIMga?GSQGNLIF TRAV19*01 TRAJ42*01 51.0 2032.0 CALNAIMga?GSQGNLIF_ 1 2570 BZLF1-190-197 EBV 0.67 2156 NEG 172 2398 12 EBV BZLF1 RAKFKQLL effector T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-B*08:01 B2M MHCI -7121 chip0423_164674 11.8 8.88 Chip2 T1D_5 T1D TGTGCAGCCGCCGAGACCTCCTACGACAAGATGATATTT CAAAETSYDKMIF TRAV13-1*01 TRAJ50*01 31.0 2093.0 TGTGCCAGCAGCTTAGTTGGGGGCCGCAATTCACCCCTCCACTTT CASSLVGGRNSPLHF TRBV7-9*01 TRBJ1-6*01 15.0 406.0 CAAAETSYDKMIF_CASSLVGGRNSPLHF 1 3051 BZLF1-190-197 EBV 0.65 2156 BZLF1-190-197 183 2868 10 EBV BZLF1 RAKFKQLL effector memory T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-B*08:01 B2M MHCI -7122 chip0423_815851 6.27 9.7 Chip2 healthy_3 healthy TGTGCCAGCAGCCCGAGACTCTTGTCGGGAACCGGGGAGCTGTTTTTT CASSPRLLSGTGELFF TRBV7-9*01 TRBJ2-2*01 87.0 3692.0 _CASSPRLLSGTGELFF 4 11215 PGT-178 PGT 0.58 1480 NEG 178 11037 6 HomoSapiens PGT LLAGIGTVPI central memory T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*02:01 B2M MHCI -7123 chip0423_626173 -1.19 9.27 Chip2 T1D_4 T1D TGTGCCTGGTGTGGCAGCTCCTACGAGCAGTACTTC CAWCGSSYEQYF TRBV30*01 TRBJ2-7*01 41.0 2723.0 _CAWCGSSYEQYF 1 6866 GAD2-MMI-8 GAD65 0.67 40 GAD2-MMI-8 150 6716 3 HomoSapiens GAD2 MMIARFKM Naive T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-B*08:01 B2M MHCI -7124 chip0423_234246 7.91 12.04 Chip2 T1D_6 T1D TGTGCCAGCAGCTTGGGACAGGCCTACGAGCAGTACTTC CASSLGQAYEQYF TRBV7-8*01 TRBJ2-7*01 5.0 444.0 _CASSLGQAYEQYF 175 3550 EBNA3A-193-201 EBV 1.0 1022 NEG 167 3383 7 EBV EBNA3A FLRGRAYGL transitional T cells between effector and memory populations PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-B*08:01 B2M MHCI -7125 chip0423_138513 10.91 6.5 Chip2 T1D_6 T1D TGCATCCTCCCACTTGCTGGTGGTACTAGCTATGGAAAGCTGACATTT CILPLAGGTSYGKLTF TRAV26-2*01 TRAJ52*01 4.0 85.0 TGTGCCAGCAGCTTGGGACAGGCCTACGAGCAGTACTTC CASSLGQAYEQYF TRBV7-8*01 TRBJ2-7*01 34.0 2253.0 CILPLAGGTSYGKLTF_CASSLGQAYEQYF 308 6940 EBNA3A-193-201 EBV 0.75 1022 EBNA3A-193-201 204 6736 10 EBV EBNA3A FLRGRAYGL effector memory T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-B*08:01 B2M MHCI -7126 chip0423_88173 10.44 8.85 Chip2 T1D_4 T1D TGTGGAGCAGACGCAACCTCAGGAACCTACAAATACATCTTT CGADATSGTYKYIF TRAV34*01 TRAJ40*01 1.0 84.0 TGCAGCGTGGGGTCGGGGGAGGGCTACGAGCAGTACTTC CSVGSGEGYEQYF TRBV29-1*01 TRBJ2-7*01 74.0 6363.0 CGADATSGTYKYIF_CSVGSGEGYEQYF 6 4643 BZLF1-190-197 EBV 0.68 2156 NEG 196 4447 10 EBV BZLF1 RAKFKQLL effector memory T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-B*08:01 B2M MHCI -7127 chip0423_441112 10.15 9.73 Chip2 T1D_5 T1D TGTGCAGCTCAGGAAACCTCCTACGACAAGGTGATATTT CAAQETSYDKVIF TRAV13-1*01 TRAJ50*01 36.0 3387.0 TGTGCCAGCACCCAGGTAGACAGACCCAACTATGGCTACACCTTC CASTQVDRPNYGYTF TRBV7-9*01 TRBJ1-2*01 29.0 806.0 CAAQETSYDKVIF_CASTQVDRPNYGYTF 17 5365 BZLF1-190-197 EBV 0.48 2156 BZLF1-190-197 189 5176 9 EBV BZLF1 RAKFKQLL effector memory T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-B*08:01 B2M MHCI -7128 chip0423_438373 15.67 8.85 Chip2 T1D_4 T1D TGTGCAGCAAGTGAAGGAGGTGCTGACGGACTCACCTTT CAASEGGADGLTF TRAV13-1*01 TRAJ45*01 34.0 1408.0 CAASEGGADGLTF_ 1 4908 BZLF1-190-197 EBV 0.53 2156 NEG 180 4728 8 EBV BZLF1 RAKFKQLL effector memory T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-B*08:01 B2M MHCI -7129 chip0423_412771 5.59 12.71 Chip2 T1D_6 T1D TGTGCCTTATGGGGAGGTAGCAACTATAAACTGACATTT CALWGGSNYKLTF TRAV24*01 TRAJ53*01 21.0 1138.0 TGTGCCAGTTGCTCTCTTAGCTCTCAGCCCCAGCATTTT CASCSLSSQPQHF TRBV19*01 TRBJ1-5*01 24.0 1181.0 CALWGGSNYKLTF_CASCSLSSQPQHF 1 7935 M1 FLU 0.5 1250 NEG 196 7739 7 InfluenzaA M1 GILGFVFTL transitional T cells between effector and memory populations PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*02:01 B2M MHCI -7130 chip0423_251609 8.11 8.49 Chip2 T1D_5 T1D TGTGCAATGAGAGAGGGCGAGGGTGGAGGCTTCAAAACTATCTTT CAMREGEGGGFKTIF TRAV14/DV4*01 TRAJ9*01 53.0 954.0 TGTGCCAGCAGCTCCGGACTAGCGGGGGGCTCTCACACCGGGGAGCTGTTTTTT CASSSGLAGGSHTGELFF TRBV11-1*01 TRBJ2-2*01 73.0 1911.0 CAMREGEGGGFKTIF_CASSSGLAGGSHTGELFF 10 10125 BZLF1-190-197 EBV 0.5 2156 BZLF1-190-197 180 9945 8 EBV BZLF1 RAKFKQLL effector memory T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-B*08:01 B2M MHCI -7131 chip0423_43570 -3.87 11.01 Chip2 T1D_6 T1D TGTGCTGTGAGGATGAATTATGGAGGAAGCCAAGGAAATCTCATCTTT CAVRMNYGGSQGNLIF TRAV21*01 TRAJ42*01 27.0 482.0 TGTGCCATGGCCAGCTCCTACGAGCAGTACTTC CAMASSYEQYF TRBV10-3*01 TRBJ2-7*01 38.0 3607.0 CAVRMNYGGSQGNLIF_CAMASSYEQYF 1 5172 NP140-148 FLU 0.78 102 NP140-148 180 4992 2 InfluenzaA NP HSNLNDATY Naive T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*01:01 B2M MHCI -7132 chip0423_852273 12.48 11.43 Chip2 T1D_5 T1D TGTGCCAGCAGCTTATTAGGGGAGCAGAATTCACCCCTCCACTTT CASSLLGEQNSPLHF TRBV7-9*01 TRBJ1-6*01 11.0 453.0 _CASSLLGEQNSPLHF 4 3333 BZLF1-190-197 EBV 0.44 2156 NEG 189 3144 9 EBV BZLF1 RAKFKQLL effector memory T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-B*08:01 B2M MHCI -7133 chip0423_681574 12.05 6.42 Chip2 T1D_6 T1D TGCATCCTCCCACTTGCTGGTGGTACTCGCTATGGGAAGCTGACATTT CILPLAGGTRYGKLTF TRAV26-2*01 TRAJ52*01 36.0 1563.0 TGTGCCAGCAGCTTGGGACAGGCCTACGAGCAGTACTTC CASSLGQAYEQYF TRBV7-8*01 TRBJ2-7*01 18.0 803.0 CILPLAGGTRYGKLTF_CASSLGQAYEQYF 5 7349 EBNA3A-193-201 EBV 0.79 1022 EBNA3A-193-201 188 7161 10 EBV EBNA3A FLRGRAYGL effector memory T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-B*08:01 B2M MHCI -7134 chip0423_409119 -0.91 10.72 Chip2 healthy_3 healthy _ 6746 5667 MART1-ALA MART1 0.77 269 NEG 167 5500 3 HomoSapiens MART1 ALAGIGILTV Naive T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*02:01 B2M MHCI -7135 chip0423_824165 14.82 8.56 Chip2 T1D_6 T1D TGCATCCTCCCACTTGCTGGTGGTACTAGCTATGGAAAGCTGACATTT CILPLAGGTSYGKLTF TRAV26-2*01 TRAJ52*01 32.0 1184.0 TGTGCCAGCAGCTTGGGACAGGCCTACGAGCAGTACTTC CASSLGQAYEQYF TRBV7-8*01 TRBJ2-7*01 40.0 2868.0 CILPLAGGTSYGKLTF_CASSLGQAYEQYF 308 3738 EBNA3A-193-201 EBV 0.76 1022 NEG 170 3568 12 EBV EBNA3A FLRGRAYGL effector T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-B*08:01 B2M MHCI -7136 chip0423_775106 7.57 12.4 Chip2 T1D_6 T1D TGTGCCAGCAGCTTGGGACAGGCCTACGAGCAGTACTTC CASSLGQAYEQYF TRBV7-8*01 TRBJ2-7*01 20.0 1482.0 _CASSLGQAYEQYF 175 4167 EBNA3A-193-201 EBV 0.71 1022 EBNA3A-193-201 196 3971 7 EBV EBNA3A FLRGRAYGL transitional T cells between effector and memory populations PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-B*08:01 B2M MHCI -7137 chip0423_239041 7.1 12.38 Chip2 healthy_3 healthy TGTGCAGCAAGTATGGGATATGGAAACAAACTGGTCTTT CAASMGYGNKLVF TRAV13-1*01 TRAJ47*01 38.0 1998.0 CAASMGYGNKLVF_ 4 5858 NP44-52 FLU 0.51 474 NP44-52 156 5702 7 InfluenzaA NP CTELKLSDY transitional T cells between effector and memory populations PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*01:01 B2M MHCI -7138 chip0423_777433 7.99 7.79 Chip2 T1D_4 T1D TGTGCCAGCAGCAGAATCCCGGGACAGGGGGCCCGACCGGATCCGAACACCGGGGAGCTGTTTTTT CASSRIPGQGARPDPNTGELFF TRBV28*01 TRBJ2-2*01 7.0 67.0 _CASSRIPGQGARPDPNTGELFF 6 11155 EBV-LMP2A EBV 0.59 700 NEG 231 10924 8 EBV LMP2A CLGGLLTMV effector memory T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*02:01 B2M MHCI -7139 chip0423_332655 6.39 13.13 Chip2 T1D_6 T1D TGTGCTGTGAGAGACATCCATACTGGAGGCTTCAAAACTATCTTT CAVRDIHTGGFKTIF TRAV3*01 TRAJ9*01 39.0 1403.0 CAVRDIHTGGFKTIF_ 3 6076 M1 FLU 0.65 1250 M1 182 5894 7 InfluenzaA M1 GILGFVFTL transitional T cells between effector and memory populations PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*02:01 B2M MHCI -7140 chip0423_260309 15.85 9.49 Chip2 T1D_5 T1D TGTGCAATGAGGGCCATTGAGGGGGCAAACAACCTCTTCTTT CAMRAIEGANNLFF TRAV14/DV4*01 TRAJ36*01 36.0 2025.0 TGCGCCAGCAGCCTCAGTTCCGGGGGGCCGTGGCGAGCAGTACTTC CASSLSSgg??ggGRGEQYF TRBV4-1*01 TRBJ2-7*01 6.0 392.0 CAMRAIEGANNLFF_CASSLSSgg??ggGRGEQYF 1 3555 BZLF1-190-197 EBV 0.6 2156 NEG 202 3353 12 EBV BZLF1 RAKFKQLL effector T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-B*08:01 B2M MHCI -7141 chip0423_480362 -2.66 13.5 Chip2 T1D_6 T1D TGTGCCGTGAACCTGGGAGGAAGCCACATACCTACATTT CAVNLGGSHIPTF TRAV12-2*01 TRAJ6*01 37.0 2011.0 TGTGCCAGCAGTTACGGGCAGGCCTACGAGCAGTACTTC CASSYGQAYEQYF TRBV6-5*01 TRBJ2-7*01 37.0 1833.0 CAVNLGGSHIPTF_CASSYGQAYEQYF 1 3930 MART1-ALA MART1 0.62 269 NEG 172 3758 1 HomoSapiens MART1 ALAGIGILTV Naive T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*02:01 B2M MHCI -7142 chip0423_803173 11.91 7.84 Chip2 T1D_6 T1D TGTGCCAGCAGCTTGGGACAGGCCTACGAGCAGTACTTC CASSLGQAYEQYF TRBV7-8*01 TRBJ2-7*01 29.0 1313.0 _CASSLGQAYEQYF 175 4393 EBNA3A-193-201 EBV 1.0 1022 NEG 210 4183 10 EBV EBNA3A FLRGRAYGL effector memory T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-B*08:01 B2M MHCI -7143 chip0423_740853 -1.21 10.29 Chip2 healthy_3 healthy TGTGCTGGGCTTACCTCAGGAACCTACAAATACATCTTT CAGLTSGTYKYIF TRAV35*01 TRAJ40*01 6.0 602.0 TGTGCCAGCAGCGGGAGTATGGAGGGGATAGAGTACGAGCAGTACTTC CASSGSMEGIEYEQYF TRBV9*01 TRBJ2-7*01 39.0 1880.0 CAGLTSGTYKYIF_CASSGSMEGIEYEQYF 1 5882 PB1-590-599 FLU 0.72 37 PB1-590-599 162 5720 3 InfluenzaA PB1 LVSDGGPNLY Naive T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*01:01 B2M MHCI -7144 chip0423_702270 6.04 13.02 Chip2 T1D_6 T1D TGGGCTTTCATGAATCATGACGGCCCCTGTGTAACCTGCAAGTTCATCTTT WAFMNHDGPCVTCKFIF TRAV38-1*01 TRAJ40*01 3.0 64.0 TGTGCCAGTAGTATACTTCTGGGAGAGACCCAGTACTTC CASSILLGETQYF TRBV19*01 TRBJ2-5*01 7.0 227.0 WAFMNHDGPCVTCKFIF_CASSILLGETQYF 1 5522 M1 FLU 0.57 1250 NEG 212 5310 7 InfluenzaA M1 GILGFVFTL transitional T cells between effector and memory populations PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*02:01 B2M MHCI -7145 chip0423_15698 13.69 9.65 Chip2 T1D_4 T1D TGCATCGTCAGAGAGGGAGGAGGTGCTGCCGGACTCACCTTT CIVREGGGAAGLTF TRAV26-1*01 TRAJ45*01 12.0 473.0 TGTGCCAGCAGCTTAGCGGTCGGAGAAGGGCCCCAGCATTTT CASSLAVGEGPQHF TRBV7-9*01 TRBJ1-5*01 44.0 1866.0 CIVREGGGAAGLTF_CASSLAVGEGPQHF 2 4902 BZLF1-190-197 EBV 0.97 2156 BZLF1-190-197 184 4718 12 EBV BZLF1 RAKFKQLL effector T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-B*08:01 B2M MHCI -7146 chip0423_817520 -1.15 9.39 Chip2 T1D_4 T1D TGTGCAATGACTATATCTAACTTTGGAAATGAGAAATTAACCTTT CAMTISNFGNEKLTF TRAV12-3*01 TRAJ48*01 4.0 102.0 TGTGCCAGCAGTCCAACCCGGGACCCACAGCGGGAGGGGAGCGAGCAGTACTTC CASSPTRDPQREGSEQYF TRBV2*01 TRBJ2-7*01 4.0 49.0 CAMTISNFGNEKLTF_CASSPTRDPQREGSEQYF 1 6976 PGT-178 PGT 0.74 1480 PGT-178 183 6793 3 HomoSapiens PGT LLAGIGTVPI Naive T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*02:01 B2M MHCI -7147 chip0423_810582 -4.36 9.1 Chip2 T1D_6 T1D TGTGCTCTTAACCCTTACAATAACAATGACATGCGCTTT CALNPYNNNDMRF TRAV19*01 TRAJ43*01 14.0 781.0 TGTGCCAGCAGCGATGACTACGAGCAGTACTTC CASSDDYEQYF TRBV9*01 TRBJ2-7*01 19.0 1713.0 CALNPYNNNDMRF_CASSDDYEQYF 1 6947 PTPRN-482-490 PTPRN 0.71 10 NEG 185 6762 2 HomoSapiens PTPRN SLAAGVKLL Naive T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*02:01 B2M MHCI -7148 chip0423_598604 -2.09 10.27 Chip2 T1D_4 T1D TGTGCCGTGAAGACAAGCTACATACCTACATTT CAVKTSYIPTF TRAV12-2*01 TRAJ6*01 16.0 1875.0 TGCGCCAGCAGCCAGGGATTGAACACTGAAGCTTTCTTT CASSQGLNTEAFF TRBV4-3*01 TRBJ1-1*01 17.0 588.0 CAVKTSYIPTF_CASSQGLNTEAFF 1 7650 NP140-148 FLU 0.59 102 NEG 166 7484 3 InfluenzaA NP HSNLNDATY Naive T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*01:01 B2M MHCI -7149 chip0423_502500 10.1 7.52 Chip2 T1D_4 T1D TGTGCCAGCAGCAGAATCCCGGGACAGGGGGCCCGACCGGATCCGAACACCGGGGAGCTGTATTTT CASSRIPGQGARPDPNTGELYF TRBV28*01 TRBJ2-2*01 2.0 4.0 _CASSRIPGQGARPDPNTGELYF 1 6500 EBV-LMP2A EBV 0.54 700 NEG 197 6303 10 EBV LMP2A CLGGLLTMV effector memory T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*02:01 B2M MHCI -7150 chip0423_194552 -1.45 8.21 Chip2 T1D_5 T1D TGTGCTGTCAGATCTTATAACACCGACAAGCTCATCTTT CAVRSYNTDKLIF TRAV41*01 TRAJ34*01 31.0 1176.0 TGCGCCAGCAGCATCGATCCCCAAGAGACCCAGTACTTC CASSIDPQETQYF TRBV5-1*01 TRBJ2-5*01 95.0 5805.0 CAVRSYNTDKLIF_CASSIDPQETQYF 1 7444 GAD2-MMI-8 GAD65 0.65 40 NEG 153 7291 3 HomoSapiens GAD2 MMIARFKM Naive T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-B*08:01 B2M MHCI -7151 chip0423_788156 -1.18 10.19 Chip2 T1D_6 T1D TGTGCAGCAATCCCAGACAACACAGGCGAACTAATCTTT CAAIPDNTGELIF TRAV23/DV6*01 TRAJ37*01 20.0 1260.0 TGTGCCAGTAGTACTCGGGCAGGCTACGAGCAGTACTTC CASSTRAGYEQYF TRBV19*01 TRBJ2-7*01 30.0 1908.0 CAAIPDNTGELIF_CASSTRAGYEQYF 1 6823 M1 FLU 0.46 1250 M1 164 6659 3 InfluenzaA M1 GILGFVFTL Naive T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*02:01 B2M MHCI -7152 chip0423_108943 14.42 10.75 Chip2 T1D_5 T1D TGTGCAGCGGCGGAAACCTCCTACGACAAGGTGATATTT CAAAETSYDKVIF TRAV13-1*01 TRAJ50*01 2.0 139.0 TGTGCCAGCCAACTAGCGGGAGGCACCGGGGAGCTGTTTTTT CASQLAGGTGELFF TRBV24-1*01 TRBJ2-2*01 3.0 129.0 CAAAETSYDKVIF_CASQLAGGTGELFF 131 5300 BZLF1-190-197 EBV 0.83 2156 NEG 182 5118 12 EBV BZLF1 RAKFKQLL effector T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-B*08:01 B2M MHCI -7153 chip0423_734125 -1.21 10.0 Chip2 T1D_5 T1D TGTGCCAGTAGTCTCCGGCCAGTCGGTGGCTACACCTTC CASSLRPVGGYTF TRBV19*01 TRBJ1-2*01 7.0 498.0 _CASSLRPVGGYTF 1 7689 ZNT8-VTD-9 ZNT8 0.82 65 ZNT8-VTD-9 179 7510 3 HomoSapiens ZNT8 VTDAAHLLI Naive T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*01:01 B2M MHCI -7154 chip0423_438762 13.67 10.01 Chip2 T1D_5 T1D TGCATCGCCATTATACAACTTCAACAAATTTTACTTT CIAIIQ??cFNKFYF TRAV26-1*01 TRAJ21*01 20.0 1655.0 TGTGCCAGTAGTATGCCCTGGACGGCTCAAGAGACCCAGTACTTC CASSMPWTAQETQYF TRBV19*01 TRBJ2-5*01 12.0 658.0 CIAIIQ??cFNKFYF_CASSMPWTAQETQYF 1 4457 BZLF1-190-197 EBV 0.7 2156 BZLF1-190-197 168 4289 12 EBV BZLF1 RAKFKQLL effector T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-B*08:01 B2M MHCI -7155 chip0423_189210 -2.3 8.96 Chip2 T1D_5 T1D TGTGCCAGCCGCTTAGGGACAGGGGGCAATTCACCCCTCCACTTT CASRLGTGGNSPLHF TRAV36/DV7*01 TRAJ11*01 3.0 9.0 TGTGCCAGCAGCTTAGGGACAGGGGGCAATTCACCCCTCCACTTT CASSLGTGGNSPLHF TRBV7-9*01 TRBJ1-6*01 119.0 4805.0 CASRLGTGGNSPLHF_CASSLGTGGNSPLHF 1 6166 NP140-148 FLU 0.74 102 NP140-148 165 6001 2 InfluenzaA NP HSNLNDATY Naive T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*01:01 B2M MHCI -7156 chip0423_167592 14.15 10.68 Chip2 T1D_4 T1D TGCATCGTCAGAGAGGGCGGAGGTGCTGACGGACTCACCTTT CIVREGGGADGLTF TRAV26-1*01 TRAJ45*01 29.0 1901.0 TGTGCCAGCAGCTTAGCGGTCGGCGCCGGGCCCCAGCATTTT CASSLAVGAGPQHF TRBV7-9*01 TRBJ1-5*01 8.0 407.0 CIVREGGGADGLTF_CASSLAVGAGPQHF 1 2669 BZLF1-190-197 EBV 0.74 2156 NEG 166 2503 12 EBV BZLF1 RAKFKQLL effector T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-B*08:01 B2M MHCI -7157 chip0423_80150 6.64 11.31 Chip2 T1D_6 T1D CTGTGCCAGTCGTGCTCTCCCGGGCGCCTCCTATACTTCACCCCTCCACTTT LCQSCSPGcg??ccSYTSPLHF TRBV19*01 TRBJ1-6*01 2.0 6.0 _LCQSCSPGcg??ccSYTSPLHF 1 9292 NP44-52 FLU 0.88 474 NP44-52 172 9120 7 InfluenzaA NP CTELKLSDY transitional T cells between effector and memory populations PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*01:01 B2M MHCI -7158 chip0423_670250 13.11 11.38 Chip2 T1D_6 T1D TGCAGCGCCGGCAGGGACGGGACTAATGAAAAACTGTTTTTT CSAGRDGTNEKLFF TRBV29-1*01 TRBJ1-4*01 137.0 8739.0 _CSAGRDGTNEKLFF 159 3023 EBV-BLMF1 EBV 0.67 2531 NEG 186 2837 9 EBV BLMF1 GLCTLVAML effector memory T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*02:01 B2M MHCI -7159 chip0423_402895 10.15 8.02 Chip2 T1D_4 T1D TGTGCCAGCAGCCAAGTCAACAACCCGGGGGATGGCTACACCTTC CASSQVNNPGDGYTF TRBV14*01 TRBJ1-2*01 10.0 399.0 _CASSQVNNPGDGYTF 94 6113 EBNA3A-158-166 EBV 0.43 444 NEG 186 5927 10 EBV EBNA3A QAKWRLQTL effector memory T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-B*08:01 B2M MHCI -7160 chip0423_76353 10.5 8.45 Chip2 T1D_5 T1D TGTGCTGTGCAGGACCCCTTGAACTTCAACAAATTTTACTTT CAVQDPLNFNKFYF TRAV20*01 TRAJ21*01 4.0 94.0 TGTGCCAGCAGCTTAGTCATGGGCGGTGGCTACACCTTC CASSLVMGGGYTF TRBV7-2*01 TRBJ1-2*01 2.0 165.0 CAVQDPLNFNKFYF_CASSLVMGGGYTF 1 5581 BZLF1-190-197 EBV 0.7 2156 NEG 171 5410 10 EBV BZLF1 RAKFKQLL effector memory T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-B*08:01 B2M MHCI -7161 chip0423_747555 -2.04 9.98 Chip2 T1D_6 T1D TGTGCCAGCAGTTATGGGAGGGGCATGAACACTGAAGCTTTCTTT CASSYGRGMNTEAFF TRBV27*01 TRBJ1-1*01 6.0 118.0 _CASSYGRGMNTEAFF 1 5775 GAD2-TLK-8 GAD65 0.67 11 NEG 177 5598 3 HomoSapiens GAD2 TLKKMREI Naive T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-B*08:01 B2M MHCI -7162 chip0423_360383 11.94 10.57 Chip2 T1D_5 T1D TGCATCGCCATTATACCACTTCAACAAATTTTACTTT CIAIIP??cFNKFYF TRAV26-1*01 TRAJ21*01 21.0 2029.0 TGTGCCCGCCCCCGGGACATGTGTCTCCTACGAGCAGTACTTC CARPRDM??tVSYEQYF TRBV27*01 TRBJ2-7*01 12.0 1157.0 CIAIIP??cFNKFYF_CARPRDM??tVSYEQYF 1 3413 BZLF1-190-197 EBV 0.6 2156 BZLF1-190-197 170 3243 9 EBV BZLF1 RAKFKQLL effector memory T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-B*08:01 B2M MHCI -7163 chip0423_822107 4.91 10.88 Chip2 T1D_4 T1D GGTGCTGTCCCAGGGGGACGCCGCGGTAGTCTCATCTTT GAVPGGRRGSLIF TRAV8-3*01 TRAJ42*01 16.0 920.0 GAVPGGRRGSLIF_ 1 5076 EBV-LMP1-1 EBV 0.71 237 NEG 162 4914 6 EBV LMP1 YLLEMLWRL central memory T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*02:01 B2M MHCI -7164 chip0423_682608 14.79 9.4 Chip2 T1D_5 T1D TGTGCTGTGCAAAACGACTACAAGCTCAGCTTT CAVQNDYKLSF TRAV20*01 TRAJ20*01 10.0 1116.0 TGCGCCAGCAGCTTGGTGGGGGGAGAGGAAGAGCAGTACTTC CASSLVGGEEEQYF TRBV5-1*01 TRBJ2-7*01 15.0 960.0 CAVQNDYKLSF_CASSLVGGEEEQYF 1 3964 BZLF1-190-197 EBV 0.57 2156 NEG 181 3783 12 EBV BZLF1 RAKFKQLL effector T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-B*08:01 B2M MHCI -7165 chip0423_780916 6.27 9.99 Chip2 T1D_6 T1D _ 6746 8595 EBNA3A-158-166 EBV 0.89 444 EBNA3A-158-166 187 8408 6 EBV EBNA3A QAKWRLQTL central memory T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-B*08:01 B2M MHCI -7166 chip0423_344511 10.34 8.4 Chip2 T1D_6 T1D TGTGCAGTCGTCACGGGAGGAGGAAACAAACTCACCTTT CAVVTGGGNKLTF TRAV5*01 TRAJ10*01 26.0 1724.0 TGCGCCAGCAGCCAAGACTATGGTCGGGGTGGCTACACCTTC CASSQDYGRGGYTF TRBV4-1*01 TRBJ1-2*01 39.0 2193.0 CAVVTGGGNKLTF_CASSQDYGRGGYTF 1 6270 LMP2A-CPL EBV 0.83 44 LMP2A-CPL 205 6065 10 EBV LMP2A CPLSKILL effector memory T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-B*08:01 B2M MHCI -7167 chip0423_432864 10.98 9.4 Chip2 T1D_5 T1D TGTGCAGAGATGGAAACCTCCTACGACAAGGTGATATTT CAEMETSYDKVIF TRAV13-2*01 TRAJ50*01 19.0 2032.0 CAEMETSYDKVIF_ 6 5992 BZLF1-190-197 EBV 0.58 2156 BZLF1-190-197 170 5822 9 EBV BZLF1 RAKFKQLL effector memory T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-B*08:01 B2M MHCI -7168 chip0423_280025 15.14 12.85 Chip2 T1D_5 T1D TGTGCATTGAGCGAGGGGGAGAGCCGTGCTTCCAAGATAATCTTT CALSEGESRASKIIF TRAV14/DV4*01 TRAJ3*01 17.0 488.0 TGCAGCGTCGGGACAGCCGATGGCTACACCTTC CSVGTADGYTF TRBV29-1*01 TRBJ1-2*01 46.0 6146.0 CALSEGESRASKIIF_CSVGTADGYTF 1 1482 BZLF1-190-197 EBV 0.7 2156 NEG 206 1276 12 EBV BZLF1 RAKFKQLL effector T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-B*08:01 B2M MHCI -7169 chip0423_621131 -2.79 9.22 Chip2 T1D_6 T1D GGTGCTGTGAGAGCCGCCTCCTCTGGGGCTGTGAGTTACCACCTCGCTTGC GAVRAASSGAVSYHLAC TRAV3*01 TRAJ28*01 3.0 103.0 GAVRAASSGAVSYHLAC_ 1 6698 PTPRN-HAR-8 PTPRN 1.0 13 PTPRN-HAR-8 160 6538 2 HomoSapiens PTPRN HARIKLKV Naive T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-B*08:01 B2M MHCI -7170 chip0423_192557 -2.99 7.89 Chip2 T1D_4 T1D TGTGCTGTGAGAGACTAGGAGGCAGGCAACATGCTCACCTTT CAVRD*EAGNMLTF TRAV3*01 TRAJ39*01 26.0 1773.0 TGCGCCAGCCGCCTCGGGCCTGCGGGCCTGGAGGCCATTCAGTACTCC CASRLGPAGLEAIQYS TRBV4-3*01 TRBJ2-4*01 2.0 106.0 CAVRD*EAGNMLTF_CASRLGPAGLEAIQYS 1 7486 PGT-178 PGT 0.5 1480 PGT-178 171 7315 2 HomoSapiens PGT LLAGIGTVPI Naive T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*02:01 B2M MHCI -7171 chip0423_779919 -2.08 7.82 Chip2 T1D_4 T1D TGTGCTCCGCCCGGGGGAGGCTTCAAAACTATCTTT CAPPGGGFKTIF TRAV19*01 TRAJ9*01 1.0 194.0 TGCAGTGCTACTAGAGACACTGAAGCTTTCTTT CSATRDTEAFF TRBV20-1*01 TRBJ1-1*01 56.0 4397.0 CAPPGGGFKTIF_CSATRDTEAFF 1 6833 PGT-178 PGT 0.67 1480 PGT-178 170 6663 3 HomoSapiens PGT LLAGIGTVPI Naive T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*02:01 B2M MHCI -7172 chip0423_161514 10.5 7.14 Chip2 T1D_5 T1D TGTGCTGTGAGAGACGACTATGGTCAGAATTTTGTCTTT CAVRDDYGQNFVF TRAV3*01 TRAJ26*01 25.0 1406.0 TGCGCCAGCAGCCAAGATTCTCACAGCGCCTACGAGCAGTACTTC CASSQDSHSAYEQYF TRBV4-1*01 TRBJ2-7*01 35.0 1574.0 CAVRDDYGQNFVF_CASSQDSHSAYEQYF 2 5832 BZLF1-190-197 EBV 0.66 2156 BZLF1-190-197 167 5665 10 EBV BZLF1 RAKFKQLL effector memory T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-B*08:01 B2M MHCI -7173 chip0423_65038 13.16 11.28 Chip2 T1D_6 T1D TGCGCCAGCAGTCTCCATCCATGGGGCTGCCTACAATGAGCAGTTCTTC CASSLHPW??gAAYNEQFF TRBV4-3*01 TRBJ2-1*01 19.0 1262.0 _CASSLHPW??gAAYNEQFF 16 2751 EBNA3A-193-201 EBV 0.5 1022 NEG 196 2555 9 EBV EBNA3A FLRGRAYGL effector memory T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-B*08:01 B2M MHCI -7174 chip0423_660075 4.91 11.72 Chip2 T1D_6 T1D TGTGCCAGCACAACGCAGCGGGGGGGACAACACTATGGCTACACCTTC CASTTQRGGQHYGYTF TRBV2*01 TRBJ1-2*01 30.0 1069.0 _CASTTQRGGQHYGYTF 1 4491 GAD2-HPR-8 GAD65 0.89 9 GAD2-HPR-8 172 4319 6 HomoSapiens GAD2 HPRYFNQL central memory T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-B*08:01 B2M MHCI -7175 chip0423_399766 8.89 7.81 Chip2 T1D_5 T1D TGTGCAATGAGAGAGGGCTTGGATGGGGGTGGCTACAATAAGCTGATTTTT CAMREGLDGGGYNKLIF TRAV14/DV4*01 TRAJ4*01 19.0 508.0 TATGCCAGCAGTCCAAGTGGAAGCGGGGGCAACAATGAGCAGTTCTTC YASSPSGSGGNNEQFF TRBV12-3*01,TRBV12-4*01 TRBJ2-1*01 20.0 1319.0 CAMREGLDGGGYNKLIF_YASSPSGSGGNNEQFF 1 7135 BZLF1-190-197 EBV 0.71 2156 NEG 211 6924 8 EBV BZLF1 RAKFKQLL effector memory T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-B*08:01 B2M MHCI -7176 chip0423_272601 6.97 12.69 Chip2 T1D_6 T1D TGTGCCGTGAACCAATACTCTTCAGGTGGAGGTGCTGCCGGTCTCCCCTTT CAVNQYSSGGGAAGLPF TRAV12-2*01 TRAJ45*01 11.0 332.0 CAVNQYSSGGGAAGLPF_ 1 4355 MART1-ALA MART1 0.64 269 NEG 193 4162 7 HomoSapiens MART1 ALAGIGILTV transitional T cells between effector and memory populations PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*02:01 B2M MHCI -7177 chip0423_180610 10.45 7.42 Chip2 T1D_5 T1D TGTGCAGCAAGGGAAACCTCCTACGACAAGGTGATATTT CAARETSYDKVIF TRAV13-1*01 TRAJ50*01 20.0 1415.0 TGTGCCAGCAGCCGGATAGGACAGGGGGTGGGAGAGACCCAGTACTTC CASSRIGQGVGETQYF TRBV7-9*01 TRBJ2-5*01 7.0 333.0 CAARETSYDKVIF_CASSRIGQGVGETQYF 3 5135 BZLF1-190-197 EBV 0.48 2156 NEG 199 4936 10 EBV BZLF1 RAKFKQLL effector memory T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-B*08:01 B2M MHCI -7178 chip0423_139837 8.58 9.31 Chip2 T1D_4 T1D TGCATCGTCAGAGAGGGAGGAGGTGCTGACGGACTCACCTTT CIVREGGGADGLTF TRAV26-1*01 TRAJ45*01 15.0 824.0 TGTGCCAGCAGCTTAGCGGTCGGAGAAGGGCCCCAGCATTTT CASSLAVGEGPQHF TRBV7-9*01 TRBJ1-5*01 45.0 1741.0 CIVREGGGADGLTF_CASSLAVGEGPQHF 68 8996 BZLF1-190-197 EBV 0.76 2156 BZLF1-190-197 211 8785 8 EBV BZLF1 RAKFKQLL effector memory T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-B*08:01 B2M MHCI -7179 chip0423_699951 6.22 14.08 Chip2 T1D_6 T1D GGTGCTGTGAGTGGACGGGGGCCACGGGCGGGGGGGCACTTACTTTT GAVSGRGcc?TGGGALTF TRAV8-4*01 TRAJ5*01 36.0 1932.0 CTGTGCCAGTAGTATAAGGAGCTCCTACGAGCAGTACTTC LCQ*YKga??gcSYEQYF TRBV19*01 TRBJ2-7*01 12.0 654.0 GAVSGRGcc?TGGGALTF_LCQ*YKga??gcSYEQYF 1 5428 M1 FLU 0.77 1250 M1 173 5255 7 InfluenzaA M1 GILGFVFTL transitional T cells between effector and memory populations PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*02:01 B2M MHCI -7180 chip0423_625538 9.24 9.68 Chip2 T1D_4 T1D TGTGCTGTCAATTCAGGAAACACACCTCTTGTCTTT CAVNSGNTPLVF TRAV1-2*01 TRAJ29*01 1.0 45.0 CAVNSGNTPLVF_ 2 4731 EBNA3A-158-166 EBV 0.77 444 EBNA3A-158-166 175 4556 8 EBV EBNA3A QAKWRLQTL effector memory T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-B*08:01 B2M MHCI -7181 chip0423_387060 -1.6 8.34 Chip2 T1D_5 T1D _ 6746 7415 GAD2-EAK-10 GAD65 0.72 14 NEG 163 7252 3 HomoSapiens GAD2 EAKQKGFVPF Naive T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-B*08:01 B2M MHCI -7182 chip0423_111871 8.69 8.7 Chip2 healthy_4 healthy TGTGCCAGCAGCACGACCCGCGCAGGGACTTGGCCCCTCCACTTT CASSTTRAGTWPLHF TRBV7-9*01 TRBJ1-6*01 4.0 61.0 _CASSTTRAGTWPLHF 18 7267 BZLF1-190-197 EBV 1.0 2156 NEG 191 7076 8 EBV BZLF1 RAKFKQLL effector memory T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-B*08:01 B2M MHCI -7183 chip0423_67455 12.69 6.81 Chip2 T1D_4 T1D TGTGCAGGGTCCACTCTTT CAG??tPLF TRAV13-2*01 TRAJ37*01 6.0 1221.0 TGTGCCAGCAGTTTAACGGGGCCCATACCCAGCACAGATACGCAGTATTTT CASSLTGPIPSTDTQYF TRBV27*01 TRBJ2-3*01 60.0 2509.0 CAG??tPLF_CASSLTGPIPSTDTQYF 1 4326 EBNA3A-158-166 EBV 0.55 444 EBNA3A-158-166 223 4103 10 EBV EBNA3A QAKWRLQTL effector memory T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-B*08:01 B2M MHCI -7184 chip0423_39833 4.84 12.02 Chip2 healthy_4 healthy _ 6746 2813 M1 FLU 0.78 1250 NEG 167 2646 6 InfluenzaA M1 GILGFVFTL central memory T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*02:01 B2M MHCI -7185 chip0423_624390 6.97 10.74 Chip2 healthy_3 healthy TGTGCTGTGAGAAGGCACCAAGCAGGAACTGCTCTGATCTTT CAVRRHQAGTALIF TRAV3*01 TRAJ15*01 31.0 1997.0 TGTGCCAGCAGCTTTGGGGTTGGGGATACAGAAGAGACCCAGTACTTC CASSFGVGDTEETQYF TRBV5-4*01 TRBJ2-5*01 21.0 985.0 CAVRRHQAGTALIF_CASSFGVGDTEETQYF 3 8305 NP44-52 FLU 0.8 474 NP44-52 170 8135 7 InfluenzaA NP CTELKLSDY transitional T cells between effector and memory populations PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*01:01 B2M MHCI -7186 chip0423_129006 14.95 10.57 Chip2 T1D_5 T1D TGTGCTGGGCACTGGGTTCTGCAAGGCTGCTGGCCTTT CAGHWVc?tARLLAF TRAV35*01 TRAJ22*01 6.0 464.0 TGCGCCAGCAGCTTAGTGGACAGGCCCTACGAGCAGTACTTC CASSLVDRPYEQYF TRBV7-9*01 TRBJ2-7*01 28.0 1947.0 CAGHWVc?tARLLAF_CASSLVDRPYEQYF 1 4290 BZLF1-190-197 EBV 0.44 2156 NEG 175 4115 12 EBV BZLF1 RAKFKQLL effector T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-B*08:01 B2M MHCI -7187 chip0423_791802 -1.24 9.49 Chip2 T1D_5 T1D TGTGCCGTGAGGGTTTCAGGAACCTACAAATACATCTTT CAVRVSGTYKYIF TRAV12-2*01 TRAJ40*01 11.0 385.0 TGTGCCTGGGCCAGGGAGGATCAGCCCCAGCATTTT CAWAREDQPQHF TRBV30*01 TRBJ1-5*01 8.0 382.0 CAVRVSGTYKYIF_CAWAREDQPQHF 1 8599 ZNT8-YAK-9 ZNT8 0.81 59 ZNT8-YAK-9 187 8412 3 HomoSapiens ZNT8 YAKWKLCSA Naive T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-B*08:01 B2M MHCI -7188 chip0423_749676 14.98 12.95 Chip2 T1D_5 T1D TGTGCAGCAAGTGAAACCTCCTACGACAAGGTGATATTT CAASETSYDKVIF TRAV13-1*01 TRAJ50*01 15.0 790.0 TGTGCCAGCAGTTTTACAGGTAGCTCTGGAAACACCATATATTTT CASSFTGSSGNTIYF TRBV12-3*01,TRBV12-4*01 TRBJ1-3*01 41.0 1300.0 CAASETSYDKVIF_CASSFTGSSGNTIYF 7 2419 BZLF1-190-197 EBV 0.45 2156 NEG 176 2243 12 EBV BZLF1 RAKFKQLL effector T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-B*08:01 B2M MHCI -7189 chip0423_321259 13.31 11.44 Chip2 T1D_4 T1D TGTGCCAGCAGCTTAGCGGTCGGAGAAGGGCCCCAGCATTTT CASSLAVGEGPQHF TRAV36/DV7*01 TRAJ27*01 1.0 14.0 TGTGCCAGCAGCTTAGCGATCGGAGAAGGGCCCCAGCATTTT CASSLAIGEGPQHF TRBV7-9*01 TRBJ1-5*01 22.0 727.0 CASSLAVGEGPQHF_CASSLAIGEGPQHF 1 2689 BZLF1-190-197 EBV 0.67 2156 NEG 179 2510 12 EBV BZLF1 RAKFKQLL effector T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-B*08:01 B2M MHCI -7190 chip0423_191380 -1.86 9.56 Chip2 T1D_5 T1D _ 6746 5901 Nef13-20 HIV 0.57 19 NEG 175 5726 3 HIV-1 Nef WPTVRERM Naive T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-B*08:01 B2M MHCI -7191 chip0423_828513 15.51 11.58 Chip2 T1D_5 T1D TGTGCAGCGGCGGAAACCTCCTACGACAAGGTGATATTT CAAAETSYDKVIF TRAV13-1*01 TRAJ50*01 50.0 5206.0 TGTGCCAGCCAACTAGCGGGAGGCACCGGGGAGCTGTTTTTT CASQLAGGTGELFF TRBV24-1*01 TRBJ2-2*01 27.0 1237.0 CAAAETSYDKVIF_CASQLAGGTGELFF 131 2074 BZLF1-190-197 EBV 0.75 2156 NEG 179 1895 12 EBV BZLF1 RAKFKQLL effector T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-B*08:01 B2M MHCI -7192 chip0423_654267 -0.07 6.43 Chip2 T1D_6 T1D TGTGCCAGCAGCTTAGGTCCACGAAACTTCTACGAGCAGTACTTC CASSLGPRNFYEQYF TRBV7-6*01 TRBJ2-7*01 114.0 5330.0 _CASSLGPRNFYEQYF 1 9594 G6PC2-YVM-8 IGRP 0.45 8 NEG 192 9402 3 HomoSapiens G6PC2 YVMVTAAL Naive T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-B*08:01 B2M MHCI -7193 chip0423_383534 6.03 12.76 Chip2 T1D_6 T1D TGTGCTGTGAGAGAATATGGAAACAAACTGGTCTTT CAVREYGNKLVF TRAV1-2*01 TRAJ47*01 1.0 17.0 TGTGCCAGCAGCTCAGCGGGTCGTGAGGGTACACAGTATTTT CASSSAGREGTQYF TRBV11-2*01 TRBJ2-3*01 15.0 641.0 CAVREYGNKLVF_CASSSAGREGTQYF 1 5821 NP380-388 FLU 0.65 60 NP380-388 187 5634 7 InfluenzaA NP ELRSRYWAI transitional T cells between effector and memory populations PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-B*08:01 B2M MHCI -7194 chip0423_744209 15.49 10.8 Chip2 T1D_5 T1D _ 6746 2474 BZLF1-190-197 EBV 0.86 2156 NEG 189 2285 12 EBV BZLF1 RAKFKQLL effector T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-B*08:01 B2M MHCI -7195 chip0423_115911 7.3 9.53 Chip2 T1D_6 T1D TGTGCTACGGAGGGCGCTTCCGGATACAGCACCCTCACCTTT CATEGASGYSTLTF TRAV17*01 TRAJ11*01 110.0 4140.0 CATEGASGYSTLTF_ 8 10088 EBV-LMP2-FLY EBV 0.52 355 NEG 172 9916 8 EBV LMP2 FLYALALLL effector memory T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*02:01 B2M MHCI -7196 chip0423_781503 8.65 9.78 Chip2 T1D_4 T1D TGTGCTCTGAGTGACGTCCAGGCAGGGACTGCTCTGATCTTT CALSDVQAGTALIF TRAV19*01 TRAJ15*01 30.0 2107.0 CALSDVQAGTALIF_ 1 7928 BZLF1-190-197 EBV 0.42 2156 NEG 181 7747 8 EBV BZLF1 RAKFKQLL effector memory T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-B*08:01 B2M MHCI -7197 chip0423_707363 -2.99 11.63 Chip2 T1D_4 T1D TGTGCCTGCTGTGGGACTTTGGAGACCGGGGAGCTGTTTTTT CACCGTLETGELFF TRBV28*01 TRBJ2-2*01 69.0 4258.0 _CACCGTLETGELFF 1 4817 PGT-178 PGT 0.59 1480 NEG 179 4638 1 HomoSapiens PGT LLAGIGTVPI Naive T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*02:01 B2M MHCI -7198 chip0423_255583 15.58 10.26 Chip2 T1D_5 T1D TGCGCCAGCAGCCTCAGTTCGGGGGGCCGTGGCGAGCAGTACTTC CASSLSSGGRGEQYF TRBV4-1*01 TRBJ2-7*01 45.0 1688.0 _CASSLSSGGRGEQYF 11 3379 BZLF1-190-197 EBV 0.5 2156 NEG 181 3198 12 EBV BZLF1 RAKFKQLL effector T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-B*08:01 B2M MHCI -7199 chip0423_572687 11.28 8.21 Chip2 T1D_6 T1D TGCATGGCCCGCTGACAACACAGGCAAACTAATCTTT CMAR*Q??cTGKLIF TRAV26-1*01 TRAJ37*01 1.0 20.0 TGTGCCAGCAGTCGCCAGGGGGGGAACTATGGCTACACCTTC CASSRQGGNYGYTF TRBV6-1*01 TRBJ1-2*01 3.0 71.0 CMAR*Q??cTGKLIF_CASSRQGGNYGYTF 1 5910 EBV-LMP2-FLY EBV 0.54 355 NEG 181 5729 10 EBV LMP2 FLYALALLL effector memory T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*02:01 B2M MHCI -7200 chip0423_763348 -2.54 8.66 Chip2 T1D_6 T1D TGTGCTACGCCGGGTCCGGCCAGCTGGGGGAAATTGCAGTTT CATPGPASWGKLQF TRAV17*01 TRAJ24*01 49.0 4034.0 TGTGCCAGCAGTCCCGGATTTTACTCTGAAGCTTTCTTT CASSPGFYSEAFF TRBV6-1*01 TRBJ1-1*01 16.0 956.0 CATPGPASWGKLQF_CASSPGFYSEAFF 1 6464 NEF-136-145 FLU 0.47 9 NEF-136-145 161 6303 2 InfluenzaA NEF PLTFGWCYKL Naive T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*02:01 B2M MHCI -7201 chip0423_45058 -1.0 6.64 Chip2 T1D_5 T1D TGCGCCAGCAGCTTGCTGGGGTCCACCGGGGAGCTGTTTTTT CASSLLGSTGELFF TRBV5-1*01 TRBJ2-2*01 139.0 7843.0 _CASSLLGSTGELFF 1 9361 GFAP-HLK-8 GFAP 0.64 28 GFAP-HLK-8 144 9217 3 HomoSapiens GFAP HLKRNIVV Naive T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-B*08:01 B2M MHCI -7202 chip0423_806687 9.48 9.85 Chip2 T1D_6 T1D TGCATCGCCGTTACCTCGTCCCGGTAACCAGTTCTCTTTT CIAVTStc??ccGNQFSF TRAV26-1*01 TRAJ49*01 12.0 905.0 TGCAGCGCCGGCAGGGACGGGACTAATGAAAAACTGTTTTTT CSAGRDGTNEKLFF TRBV29-1*01 TRBJ1-4*01 93.0 4259.0 CIAVTStc??ccGNQFSF_CSAGRDGTNEKLFF 4 6517 EBV-BLMF1 EBV 0.55 2531 NEG 186 6331 8 EBV BLMF1 GLCTLVAML effector memory T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*02:01 B2M MHCI -7203 chip0423_695695 12.37 6.24 Chip2 healthy_4 healthy TGTGCCAGCAGCACGACCCGCGCAGGGACTTGGCCCCTCCACTTT CASSTTRAGTWPLHF TRBV7-9*01 TRBJ1-6*01 20.0 788.0 _CASSTTRAGTWPLHF 18 5548 BZLF1-190-197 EBV 0.5 2156 NEG 207 5341 10 EBV BZLF1 RAKFKQLL effector memory T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-B*08:01 B2M MHCI -7204 chip0423_656964 10.5 10.34 Chip2 T1D_4 T1D TGTGCCAGCAGCCAAGTCAACAACCCGGGGGATGGCTACACCTTC CASSQVNNPGDGYTF TRBV14*01 TRBJ1-2*01 13.0 313.0 _CASSQVNNPGDGYTF 94 7028 EBNA3A-158-166 EBV 0.74 444 NEG 185 6843 9 EBV EBNA3A QAKWRLQTL effector memory T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-B*08:01 B2M MHCI -7205 chip0423_310040 -1.88 7.93 Chip2 T1D_6 T1D TGTGCCAGCAGTTCAGGAGATCAGCCCCAGCTTTTT CASSSGDQPQLF TRBV27*01 TRBJ1-5*01 22.0 1462.0 _CASSSGDQPQLF 1 6150 IAPP-STN-9 IAPP 0.89 48 IAPP-STN-9 164 5986 3 HomoSapiens IAPP STNVGSNTY Naive T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*01:01 B2M MHCI -7206 chip0423_766703 16.11 11.7 Chip2 T1D_5 T1D TGTGCAGCAACGGAAACCTCCTACGACAAGGTGATATTT CAATETSYDKVIF TRAV13-1*01 TRAJ50*01 46.0 4087.0 TGTGCCAGCAGTCCCCCGGGGAGAAATGAAAAACTGTTTTTT CASSPPGRNEKLFF TRBV12-3*01,TRBV12-4*01 TRBJ1-4*01 65.0 1867.0 CAATETSYDKVIF_CASSPPGRNEKLFF 34 2533 BZLF1-190-197 EBV 0.44 2156 NEG 177 2356 12 EBV BZLF1 RAKFKQLL effector T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-B*08:01 B2M MHCI -7207 chip0423_545163 6.78 10.19 Chip2 T1D_6 T1D CGCATCCTCCCACTTGCTGGTGGTGCTAGCTATGGACAGCTGACATTT RILPLAGGASYGQLTF TRAV26-2*01 TRAJ52*01 10.0 289.0 TGTGCCAGCAGCTTGGGACAGGCCTACGAGCAGTACTTC CASSLGQAYEQYF TRBV7-8*01 TRBJ2-7*01 15.0 869.0 RILPLAGGASYGQLTF_CASSLGQAYEQYF 1 8379 EBNA3A-193-201 EBV 0.55 1022 EBNA3A-193-201 168 8211 6 EBV EBNA3A FLRGRAYGL central memory T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-B*08:01 B2M MHCI -7208 chip0423_445050 -2.57 8.17 Chip2 T1D_4 T1D TGTGCCAGCAGCTTCGAGCAGTCCTACGAGCAGTACTTC CASSFEQSYEQYF TRBV11-3*01 TRBJ2-7*01 28.0 1044.0 _CASSFEQSYEQYF 1 6433 PGT-178 PGT 0.66 1480 PGT-178 166 6267 2 HomoSapiens PGT LLAGIGTVPI Naive T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*02:01 B2M MHCI -7209 chip0423_64438 -2.72 9.93 Chip2 T1D_4 T1D TGTGCAATGAGCAGATCTAACTTTGGAAATGAGAAATTAACCTTT CAMSRSNFGNEKLTF TRAV12-3*01 TRAJ48*01 116.0 3716.0 TGTGCCAGCAGCTTCGCCGGGACAGGAGGCGAGCAGTACTTC CASSFAGTGGEQYF TRBV5-4*01 TRBJ2-7*01 40.0 2363.0 CAMSRSNFGNEKLTF_CASSFAGTGGEQYF 1 5559 PGT-178 PGT 0.81 1480 PGT-178 181 5378 3 HomoSapiens PGT LLAGIGTVPI Naive T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*02:01 B2M MHCI -7210 chip0423_752131 8.45 12.05 Chip2 T1D_5 T1D _ 6746 3480 BZLF1-190-197 EBV 0.88 2156 NEG 167 3313 7 EBV BZLF1 RAKFKQLL transitional T cells between effector and memory populations PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-B*08:01 B2M MHCI -7211 chip0423_32338 -1.5 7.95 Chip2 T1D_5 T1D TGTGCCAGCAGCGTAGGGGCCCTCTGGAACACTGAAGCTTTCTTT CASSVGALWNTEAFF TRBV9*01 TRBJ1-1*01 19.0 649.0 _CASSVGALWNTEAFF 1 9433 NP30-38 FLU 0.47 72 NEG 204 9229 3 InfluenzaA NP RPIIRPATL Naive T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-B*08:01 B2M MHCI -7212 chip0423_685181 -4.0 7.39 Chip2 T1D_6 T1D TGTGTTGTGAGTGGATATGCTGGTGGTACTAGCTATGGAAAGCTGACATTT CVVSGYAGGTSYGKLTF TRAV8-2*01 TRAJ52*01 84.0 1882.0 CVVSGYAGGTSYGKLTF_ 1 8609 EBNA3A-158-166 EBV 0.54 444 NEG 204 8405 2 EBV EBNA3A QAKWRLQTL Naive T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-B*08:01 B2M MHCI -7213 chip0423_711630 8.86 13.76 Chip2 T1D_5 T1D TGTGCAATGAGAGAGGGCGAGGGTGGAGGCTTCAAAACTATCTTT CAMREGEGGGFKTIF TRAV14/DV4*01 TRAJ9*01 100.0 3998.0 TGTGCCAGCAGCCCAATGGGGTCCATGGAAGCTTTCTTT CASSPMGSMEAFF TRBV28*01 TRBJ1-1*01 20.0 1011.0 CAMREGEGGGFKTIF_CASSPMGSMEAFF 1 2608 gp160-586-593 HIV 0.4 30 NEG 158 2450 11 HIV-1 gp160 YLKDQQLL effector T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-B*08:01 B2M MHCI -7214 chip0423_867785 10.03 7.02 Chip2 T1D_5 T1D TGTGCTGTGGGTCGGGAAACCTCCTACGACAAGGTGATATCT CAVGRETSYDKVIS TRAV8-3*01 TRAJ50*01 13.0 789.0 TGTGCCAGCAGCTTACTCGGGGCAGGCACCGGGGAGCTGTTTTTT CASSLLGAGTGELFF TRBV7-9*01 TRBJ2-2*01 32.0 1880.0 CAVGRETSYDKVIS_CASSLLGAGTGELFF 1 8817 BZLF1-190-197 EBV 0.4 2156 BZLF1-190-197 201 8616 10 EBV BZLF1 RAKFKQLL effector memory T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-B*08:01 B2M MHCI -7215 chip0423_663377 -2.75 13.18 Chip2 T1D_4 T1D TGTGCCGTGAACAAAGGCTTCAAAACTATCTTT CAVNKGFKTIF TRAV12-2*01 TRAJ9*01 34.0 2540.0 TGTGCCAGCAGCTATGGGGGGGACACCGGGGAGCTGTTTTTT CASSYGGDTGELFF TRBV4-2*01 TRBJ2-2*01 42.0 1717.0 CAVNKGFKTIF_CASSYGGDTGELFF 1 4025 PGT-178 PGT 0.57 1480 PGT-178 176 3849 1 HomoSapiens PGT LLAGIGTVPI Naive T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*02:01 B2M MHCI -7216 chip0423_623356 -1.11 10.07 Chip2 T1D_4 T1D _ 6746 4047 ZNT8-314-322 ZNT8 0.48 16 ZNT8-314-322 160 3887 4 HomoSapiens ZNT8 ILSAHVATA Naive T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*02:01 B2M MHCI -7217 chip0423_535560 -1.61 7.77 Chip2 T1D_5 T1D TGTGCAATCAGCGCGGGGAACTTTGGAAATGAGAATTTAACCTTT CAISAGNFGNENLTF TRAV12-3*01 TRAJ48*01 3.0 102.0 TGTGCCAGCAGCACCCAAGAGACCCAGTACTTC CASSTQETQYF TRBV7-9*01 TRBJ2-5*01 20.0 2103.0 CAISAGNFGNENLTF_CASSTQETQYF 1 6263 GFAP-HLK-8 GFAP 0.6 28 NEG 167 6096 3 HomoSapiens GFAP HLKRNIVV Naive T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-B*08:01 B2M MHCI -7218 chip0423_499965 12.92 10.48 Chip2 T1D_5 T1D TGTGCCAGCAGCTTCACTAGCGGGACAGATCCTGAGCTGTTTTTT CASSFTSGTDPELFF TRBV7-9*01 TRBJ2-2*01 35.0 1527.0 _CASSFTSGTDPELFF 17 5252 BZLF1-190-197 EBV 0.64 2156 NEG 174 5078 9 EBV BZLF1 RAKFKQLL effector memory T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-B*08:01 B2M MHCI -7219 chip0423_446019 15.05 10.58 Chip2 T1D_5 T1D TGTGCAATGAGGGCCATTGAGGGGGCAAACAACCTCTTCTTT CAMRAIEGANNLFF TRAV14/DV4*01 TRAJ36*01 36.0 2034.0 CAMRAIEGANNLFF_ 17 2846 BZLF1-190-197 EBV 0.59 2156 NEG 186 2660 12 EBV BZLF1 RAKFKQLL effector T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-B*08:01 B2M MHCI -7220 chip0423_17536 12.45 12.42 Chip2 T1D_5 T1D TGTGCAGCAAGTGAAACCTCCTACGACAAGGTGATATTT CAASETSYDKVIF TRAV13-1*01 TRAJ50*01 22.0 2005.0 TGTGCCAGCAGTTTTACAGGTAGCTCTGGAAACACCATATATTTT CASSFTGSSGNTIYF TRBV12-3*01,TRBV12-4*01 TRBJ1-3*01 39.0 1203.0 CAASETSYDKVIF_CASSFTGSSGNTIYF 7 2299 BZLF1-190-197 EBV 0.86 2156 NEG 167 2132 11 EBV BZLF1 RAKFKQLL effector T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-B*08:01 B2M MHCI -7221 chip0423_633159 11.73 7.64 Chip2 T1D_4 T1D TGTGCCAGCAGCTTAACGGTTCTGGCAGGTCCAAACACTGAAGCTTTCTTT CASSLTVLAGPNTEAFF TRBV7-3*01 TRBJ1-1*01 36.0 983.0 _CASSLTVLAGPNTEAFF 32 6268 BZLF1-190-197 EBV 0.86 2156 BZLF1-190-197 186 6082 10 EBV BZLF1 RAKFKQLL effector memory T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-B*08:01 B2M MHCI -7222 chip0423_219705 16.11 11.88 Chip2 T1D_5 T1D TGTGCAGCAACGGAAACCTCCTACGACAAGGTGATATTT CAATETSYDKVIF TRAV13-1*01 TRAJ50*01 11.0 979.0 TGTGCCAGCAGCTTATTAGGCCAGGACGAGGCTTAGTCACCCCTCGACTTT CASSLLGQDEA*SPLDF TRBV11-1*01 TRBJ1-6*01 12.0 422.0 CAATETSYDKVIF_CASSLLGQDEA*SPLDF 1 1832 BZLF1-190-197 EBV 0.6 2156 NEG 183 1649 12 EBV BZLF1 RAKFKQLL effector T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-B*08:01 B2M MHCI -7223 chip0423_550262 12.44 6.22 Chip2 healthy_4 healthy CGCATCGTCAGAGAGACTAACAATGACATGCGCTTT RIVRETNNDMRF TRAV26-1*01 TRAJ43*01 1.0 15.0 TGCGCCAGCAGCCAAACAGGTTCCCTGAACACTGAAGCTTTCTTT CASSQTGSLNTEAFF TRBV4-1*01 TRBJ1-1*01 38.0 1262.0 RIVRETNNDMRF_CASSQTGSLNTEAFF 1 4916 BZLF1-190-197 EBV 0.88 2156 NEG 248 4668 10 EBV BZLF1 RAKFKQLL effector memory T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-B*08:01 B2M MHCI -7224 chip0423_844833 10.81 12.1 Chip2 T1D_5 T1D TGTGCAGCAAAAGAAACCTCCTACGACAAGGTGATATTT CAAKETSYDKVIF TRAV13-1*01 TRAJ50*01 23.0 1471.0 TGTGCCAGCAGCTTATTAGGACGATCGAACACTGAAGCTTTCTTT CASSLLGRSNTEAFF TRBV7-9*01 TRBJ1-1*01 131.0 4027.0 CAAKETSYDKVIF_CASSLLGRSNTEAFF 13 3264 BZLF1-190-197 EBV 1.0 2156 NEG 173 3091 9 EBV BZLF1 RAKFKQLL effector memory T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-B*08:01 B2M MHCI -7225 chip0423_750182 15.25 9.11 Chip2 T1D_4 T1D TGCATCGTCAGAGAGGGAGGAGGTGCTGACGGACTCACCTTT CIVREGGGADGLTF TRAV26-1*01 TRAJ45*01 32.0 1557.0 TGTGCCAGCAGCTTAGCGGTCGGAGAAGGGCCCCAGCATTTT CASSLAVGEGPQHF TRBV7-9*01 TRBJ1-5*01 80.0 2875.0 CIVREGGGADGLTF_CASSLAVGEGPQHF 68 5074 BZLF1-190-197 EBV 0.89 2156 BZLF1-190-197 214 4860 12 EBV BZLF1 RAKFKQLL effector T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-B*08:01 B2M MHCI -7226 chip0423_293767 10.97 7.34 Chip2 T1D_5 T1D TGTGCAGCACAGGAAACCTCCTACGACAAGGTGATATTT CAAQETSYDKVIF TRAV13-1*01 TRAJ50*01 43.0 3197.0 TGTGCCAGCAGCCCACTAGGGATCTCCTACAATGAGCAGTTCTTC CASSPLGISYNEQFF TRBV7-9*01 TRBJ2-1*01 80.0 4800.0 CAAQETSYDKVIF_CASSPLGISYNEQFF 1 5166 BZLF1-190-197 EBV 0.44 2156 NEG 165 5001 6 EBV BZLF1 RAKFKQLL central memory T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-B*08:01 B2M MHCI -7227 chip0423_171028 11.05 10.21 Chip2 T1D_6 T1D TGCAGCGTGGGGACAGGGGGCACTAATGAAAAACTGTTTTTT CSVGTGGTNEKLFF TRBV29-1*01 TRBJ1-4*01 6.0 107.0 _CSVGTGGTNEKLFF 638 5585 EBV-BLMF1 EBV 0.64 2531 NEG 173 5412 9 EBV BLMF1 GLCTLVAML effector memory T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*02:01 B2M MHCI -7228 chip0423_820436 -2.8 9.05 Chip2 T1D_4 T1D TCTGCTGGGCCGGGGCTCTCTCCCTTTGGTCCTGCGCCATTAACCTTT SAGPGLSPFGPAPLTF TRAV35*01 TRAJ48*01 23.0 365.0 TGTGCCAGCAGTTTAGGGCCATTCAGTGAAGCTTTCTTT CASSLGPFSEAFF TRBV27*01 TRBJ1-1*01 89.0 4826.0 SAGPGLSPFGPAPLTF_CASSLGPFSEAFF 1 7516 INS-MAL-8 INS 0.43 38 NEG 159 7357 2 HomoSapiens INS MALWMRLL Naive T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-B*08:01 B2M MHCI -7229 chip0423_733947 12.05 10.01 Chip2 T1D_6 T1D TGTGCAGAGAGTACAGGCAAACTAATCTTT CAESTGKLIF TRAV5*01 TRAJ37*01 1.0 32.0 TGCAGCGCCGGCAGGGACGGGACTAATGAAAAACTGTTTTTT CSAGRDGTNEKLFF TRBV29-1*01 TRBJ1-4*01 41.0 1891.0 CAESTGKLIF_CSAGRDGTNEKLFF 14 4818 EBV-BLMF1 EBV 0.54 2531 NEG 186 4632 9 EBV BLMF1 GLCTLVAML effector memory T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*02:01 B2M MHCI -7230 chip0423_531377 -1.31 11.58 Chip2 T1D_4 T1D TGTGCCAGCAGTTCGCAGGGGGCGCAGGGCTACACCTTC CASSSQGAQGYTF TRBV27*01 TRBJ1-2*01 13.0 959.0 _CASSSQGAQGYTF 1 5294 ZNT8-145-153 ZNT8 0.62 14 NEG 153 5141 3 HomoSapiens ZNT8 LLSILCIWV Naive T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*02:01 B2M MHCI -7231 chip0423_508136 -2.61 10.09 Chip2 healthy_4 healthy _ 6746 5864 INS-WMR-8 INS 0.81 17 INS-WMR-8 170 5694 4 HomoSapiens INS WMRLLPLL Naive T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-B*08:01 B2M MHCI -7232 chip0423_132396 -3.18 10.86 Chip2 T1D_4 T1D TGTGCCAGCAAACAGTTTGGGGGACCCCCCTACGAGCAGTACTTC CASKQFGGPPYEQYF TRBV5-6*01 TRBJ2-7*01 21.0 1082.0 _CASKQFGGPPYEQYF 1 3873 DUF5119-124-133 DUF5119 0.84 7 DUF5119-124-133 135 3738 3 HomoSapiens DUF5119 MVWGPDPLYV Naive T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*02:01 B2M MHCI -7233 chip0423_63293 6.02 13.73 Chip2 T1D_4 T1D TGTGCTGGAGCTTTTGGCTCTCGCAACACAGGCAAACTAATCTTT CAGAFGSRNTGKLIF TRAV27*01 TRAJ37*01 6.0 147.0 TGTGCCAGTAGTATCCGTAGCTCCTACGAGCAGTACTTC CASSIRSSYEQYF TRBV19*01 TRBJ2-7*01 14.0 564.0 CAGAFGSRNTGKLIF_CASSIRSSYEQYF 1 6164 M1 FLU 0.66 1250 M1 197 5967 7 InfluenzaA M1 GILGFVFTL transitional T cells between effector and memory populations PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*02:01 B2M MHCI -7234 chip0423_819203 12.18 6.13 Chip2 T1D_5 T1D TGTGCAGCAAGTGAAACCTCCTACGACAAGGTGATATTT CAASETSYDKVIF TRAV13-1*01 TRAJ50*01 21.0 1586.0 TGTGCCAGCAGCTGGCTCGGGGCTCGGTATAATTCACCCCTCCACTTT CASSWLGARYNSPLHF TRBV7-9*01 TRBJ1-6*01 43.0 1692.0 CAASETSYDKVIF_CASSWLGARYNSPLHF 4 8117 BZLF1-190-197 EBV 0.64 2156 NEG 208 7909 10 EBV BZLF1 RAKFKQLL effector memory T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-B*08:01 B2M MHCI -7235 chip0423_801084 9.8 7.07 Chip2 T1D_5 T1D TGTGCCAGCAGGCGGGGAAGCTCCTATAATTCACCCCTCCACTTT CASRRGSSYNSPLHF TRBV12-3*01,TRBV12-4*01 TRBJ1-6*01 42.0 1433.0 _CASRRGSSYNSPLHF 1 8423 BZLF1-190-197 EBV 1.0 2156 NEG 217 8206 10 EBV BZLF1 RAKFKQLL effector memory T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-B*08:01 B2M MHCI -7236 chip0423_647403 -1.14 7.21 Chip2 healthy_3 healthy TGTGCAATGAGTATACCTAACTTTGGAAATGAGACATTAACCTTT CAMSIPNFGNETLTF TRAV12-3*01 TRAJ48*01 11.0 336.0 TGCAGTGCTGAAGGTGGGACAGAGACCCCGGATACGCAGTATTTT CSAEGGTETPDTQYF TRBV20-1*01 TRBJ2-3*01 27.0 758.0 CAMSIPNFGNETLTF_CSAEGGTETPDTQYF 1 7923 PGT-178 PGT 0.75 1480 PGT-178 180 7743 3 HomoSapiens PGT LLAGIGTVPI Naive T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*02:01 B2M MHCI -7237 chip0423_276185 12.93 6.31 Chip2 T1D_5 T1D TGTGCAGCAACGGAAACCTCCTACGACAAGGTGATATTT CAATETSYDKVIF TRAV13-1*01 TRAJ50*01 6.0 567.0 TGTGCCAGCAGCCCTCTTGGGTGCAATGAAAAACTGTTTTTT CASSPLGCNEKLFF TRBV7-9*01 TRBJ1-4*01 77.0 1971.0 CAATETSYDKVIF_CASSPLGCNEKLFF 2 4851 BZLF1-190-197 EBV 0.8 2156 NEG 235 4616 10 EBV BZLF1 RAKFKQLL effector memory T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-B*08:01 B2M MHCI -7238 chip0423_37701 14.32 9.72 Chip2 T1D_5 T1D TGTGCAGAGATGGAAACCTCCTACGACAAGGTGATATTT CAEMETSYDKVIF TRAV13-2*01 TRAJ50*01 3.0 122.0 TGTGCCAGCAGCTTACTGGGGACGGTCGATAATTCACCCCTCCACTTT CASSLLGTVDNSPLHF TRBV7-9*01 TRBJ1-6*01 15.0 696.0 CAEMETSYDKVIF_CASSLLGTVDNSPLHF 5 5021 BZLF1-190-197 EBV 0.59 2156 NEG 180 4841 12 EBV BZLF1 RAKFKQLL effector T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-B*08:01 B2M MHCI -7239 chip0423_421103 -2.59 13.89 Chip2 T1D_4 T1D _ 6746 3658 G6PC2-LTS-10 IGRP 0.76 59 G6PC2-LTS-10 163 3495 1 HomoSapiens G6PC2 LTSLTILQLY Naive T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*01:01 B2M MHCI -7240 chip0423_282391 -3.23 10.3 Chip2 T1D_4 T1D TGTGCCGTGCACCAGTTCTATTTT CAVHQFYF TRAV12-2*01 TRAJ49*01 1.0 18.0 TGTGCCAGCAGAATAGCGGCACTTAGCACAGATACGCAGTATTTT CASRIAALSTDTQYF TRBV6-4*01 TRBJ2-3*01 8.0 441.0 CAVHQFYF_CASRIAALSTDTQYF 1 4891 PGT-178 PGT 0.68 1480 NEG 171 4720 2 HomoSapiens PGT LLAGIGTVPI Naive T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*02:01 B2M MHCI -7241 chip0423_150351 10.69 10.19 Chip2 T1D_5 T1D TGTGCAGCAAGTGAAACCTCCTACGACAAGGTGATATTT CAASETSYDKVIF TRAV13-1*01 TRAJ50*01 21.0 1309.0 CAASETSYDKVIF_ 51 3291 BZLF1-190-197 EBV 0.71 2156 NEG 179 3112 9 EBV BZLF1 RAKFKQLL effector memory T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-B*08:01 B2M MHCI -7242 chip0423_577103 7.1 13.71 Chip2 healthy_3 healthy _ 6746 4703 M1 FLU 0.44 1250 NEG 173 4530 7 InfluenzaA M1 GILGFVFTL transitional T cells between effector and memory populations PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*02:01 B2M MHCI -7243 chip0423_316110 9.83 9.24 Chip2 T1D_5 T1D TGTGCAGCGGCGGAAACCTCCTACGACAAGGTGATATTT CAAAETSYDKVIF TRAV13-1*01 TRAJ50*01 22.0 2092.0 TGTGCCAGCCAACTAGCGGGAGGCACCGGGGAGCTGTTTTTT CASQLAGGTGELFF TRBV24-1*01 TRBJ2-2*01 10.0 587.0 CAAAETSYDKVIF_CASQLAGGTGELFF 131 3576 BZLF1-190-197 EBV 0.75 2156 NEG 212 3364 8 EBV BZLF1 RAKFKQLL effector memory T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-B*08:01 B2M MHCI -7244 chip0423_278066 0.04 8.65 Chip2 T1D_6 T1D TGTGCAATGAGTCTATCTAACTTTGGAAATGAGAAATTAACCTTT CAMSLSNFGNEKLTF TRAV12-3*01 TRAJ48*01 1.0 41.0 TGCAGTGTCCTCAGCGGCGGGGGCACAGATACGCAGTATTTT CSVLSGGGTDTQYF TRBV20-1*01 TRBJ2-3*01 16.0 1535.0 CAMSLSNFGNEKLTF_CSVLSGGGTDTQYF 1 7413 PGT-178 PGT 0.81 1480 PGT-178 178 7235 4 HomoSapiens PGT LLAGIGTVPI Naive T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*02:01 B2M MHCI -7245 chip0423_45416 14.2 10.27 Chip2 T1D_6 T1D TGTGCCAGCAGCTTGGGACAGGCCTACGAGCAGTACTTC CASSLGQAYEQYF TRBV7-8*01 TRBJ2-7*01 1.0 10.0 _CASSLGQAYEQYF 175 5409 EBNA3A-193-201 EBV 1.0 1022 NEG 202 5207 12 EBV EBNA3A FLRGRAYGL effector T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-B*08:01 B2M MHCI -7246 chip0423_43209 13.04 6.94 Chip2 T1D_6 T1D TGCATCCTCCCACTTGCTGGTGGTACTAACTATGGAAAGCTGACATTT CILPLAGGTNYGKLTF TRAV26-2*01 TRAJ52*01 28.0 647.0 TGTGCCAGCAGCTTGGGACAGGCCTACGAGCAGTACTTC CASSLGQAYEQYF TRBV7-8*01 TRBJ2-7*01 9.0 482.0 CILPLAGGTNYGKLTF_CASSLGQAYEQYF 3 3153 EBNA3A-193-201 EBV 1.0 1022 NEG 182 2971 10 EBV EBNA3A FLRGRAYGL effector memory T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-B*08:01 B2M MHCI -7247 chip0423_280008 11.89 12.95 Chip2 T1D_4 T1D TGCATCGTCAGAGAGGGAGGAGGTGCTGACGGACTCACCTTT CIVREGGGADGLTF TRAV26-1*01 TRAJ45*01 32.0 1810.0 TGTGCCAGCAGCTTAGCGGTCGGAGAAGGGCCCCAGCATTTT CASSLAVGEGPQHF TRBV7-9*01 TRBJ1-5*01 94.0 4676.0 CIVREGGGADGLTF_CASSLAVGEGPQHF 68 2639 BZLF1-190-197 EBV 0.7 2156 NEG 173 2466 11 EBV BZLF1 RAKFKQLL effector T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-B*08:01 B2M MHCI -7248 chip0423_256374 12.48 6.3 Chip2 T1D_5 T1D TGTGCCAGCAGCTCATTGGGGGGGCCTGGACACACCATATATTTT CASSSLGGPGHTIYF TRBV7-9*01 TRBJ1-3*01 29.0 477.0 _CASSSLGGPGHTIYF 1 6288 BZLF1-190-197 EBV 0.65 2156 NEG 218 6070 10 EBV BZLF1 RAKFKQLL effector memory T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-B*08:01 B2M MHCI -7249 chip0423_761996 -1.98 10.82 Chip2 T1D_5 T1D TGCGCCAGCAGCCCGGACGAGAGTCCCTACGAGCAGTACTTC CASSPDESPYEQYF TRBV5-1*01 TRBJ2-7*01 40.0 1749.0 _CASSPDESPYEQYF 1 5961 NP140-148 FLU 0.57 102 NEG 174 5787 3 InfluenzaA NP HSNLNDATY Naive T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*01:01 B2M MHCI -7250 chip0423_226566 15.58 9.24 Chip2 T1D_4 T1D TGCATCGTCAGAGAGGGAGGAGGTGCTGACGGACTCACCTTT CIVREGGGADGLTF TRAV26-1*01 TRAJ45*01 31.0 1331.0 TGTGCCAGCAGTTTTCTGCGGGGGGATCAGCCCCAGCATTTT CASSFLRGDQPQHF TRBV27*01 TRBJ1-5*01 17.0 1069.0 CIVREGGGADGLTF_CASSFLRGDQPQHF 1 3222 BZLF1-190-197 EBV 0.88 2156 BZLF1-190-197 172 3050 12 EBV BZLF1 RAKFKQLL effector T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-B*08:01 B2M MHCI -7251 chip0423_325438 9.45 8.32 Chip2 T1D_5 T1D TGTGCTGGAGCTGGGGGGGGGCCGCTTCTCTTC CAGAGGGPLLF TRAV27*01 TRAJ23*01 20.0 890.0 TGTGCCAGCAGCCACACAGGGGATAATTCACCCCTCCACTTT CASSHTGDNSPLHF TRBV7-9*01 TRBJ1-6*01 21.0 538.0 CAGAGGGPLLF_CASSHTGDNSPLHF 1 6052 BZLF1-190-197 EBV 0.83 2156 BZLF1-190-197 213 5839 8 EBV BZLF1 RAKFKQLL effector memory T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-B*08:01 B2M MHCI -7252 chip0423_787714 -2.71 8.21 Chip2 healthy_3 healthy TGTGCAATGAGCGTATCTAACTTTGGAAATGAGAAATTAACCTTT CAMSVSNFGNEKLTF TRAV12-3*01 TRAJ48*01 120.0 3936.0 TGTGCCAGCAGCTTCGGATGGGATGGCGGGAGCCTTTCCTACGAGCAGTACTTC CASSFGWDGGSLSYEQYF TRBV11-3*01 TRBJ2-7*01 49.0 1691.0 CAMSVSNFGNEKLTF_CASSFGWDGGSLSYEQYF 1 5908 PGT-178 PGT 0.73 1480 PGT-178 159 5749 3 HomoSapiens PGT LLAGIGTVPI Naive T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*02:01 B2M MHCI -7253 chip0423_79536 8.82 8.52 Chip2 T1D_4 T1D TGTGCCAGCAGCTTAGCGGTCGGAGAAGGGCCCCAGCATTTT CASSLAVGEGPQHF TRBV7-9*01 TRBJ1-5*01 29.0 1215.0 _CASSLAVGEGPQHF 113 8396 BZLF1-190-197 EBV 0.97 2156 BZLF1-190-197 191 8205 8 EBV BZLF1 RAKFKQLL effector memory T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-B*08:01 B2M MHCI -7254 chip0423_729599 10.84 7.94 Chip2 T1D_4 T1D TGTGGAGCCGACCCGCCCTCAGGAACCTACCAATTCCTCTTT CGADPPSGTYQFLF TRAV34*01 TRAJ40*01 4.0 79.0 TGCAGCGTTGGGTCGGGGGAGGGTGTTGAGCAGTTCTTC CSVGSGEGVEQFF TRBV29-1*01 TRBJ2-1*01 55.0 5097.0 CGADPPSGTYQFLF_CSVGSGEGVEQFF 1 7545 BZLF1-190-197 EBV 0.67 2156 NEG 179 7366 10 EBV BZLF1 RAKFKQLL effector memory T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-B*08:01 B2M MHCI -7255 chip0423_127164 7.91 8.63 Chip2 T1D_4 T1D TGTGCTGTCAATTCAGGAAACACACCTCTTGTCTTT CAVNSGNTPLVF TRAV1-2*01 TRAJ29*01 39.0 3002.0 TGTGCCAGCAGCCAAGTCAACAACCCGGGGGATGGCTACACCTTC CASSQVNNPGDGYTF TRBV14*01 TRBJ1-2*01 23.0 803.0 CAVNSGNTPLVF_CASSQVNNPGDGYTF 31 11735 EBNA3A-158-166 EBV 0.88 444 EBNA3A-158-166 204 11531 8 EBV EBNA3A QAKWRLQTL effector memory T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-B*08:01 B2M MHCI -7256 chip0423_843794 15.11 9.49 Chip2 healthy_4 healthy TGTGCTGTAAACTTCAACAAATTTTACTTT CAVNFNKFYF TRAV8-3*01 TRAJ21*01 19.0 2101.0 TGCAGCGTTGGGACAGGGGGCACAAATGAAAAACTGTTTTTT CSVGTGGTNEKLFF TRBV29-1*01 TRBJ1-4*01 3.0 67.0 CAVNFNKFYF_CSVGTGGTNEKLFF 1 3140 EBV-BRLF1 EBV 0.9 1264 NEG 187 2953 12 EBV BRLF1 YVLDHLIVV effector T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*02:01 B2M MHCI -7257 chip0423_56429 8.83 11.58 Chip2 T1D_4 T1D TGTGGAGCAGACATGGGTCGAGGAACCTACAAATACATCTTT CGADMGRGTYKYIF TRAV34*01 TRAJ40*01 55.0 2141.0 TGTGCCAGCAGCTCAGGGACAGGTGAGGGGTGTGAGCAGTTCTTC CASSSGTGEGCEQFF TRBV7-3*01 TRBJ2-1*01 6.0 323.0 CGADMGRGTYKYIF_CASSSGTGEGCEQFF 1 5183 BZLF1-190-197 EBV 0.69 2156 NEG 176 5007 7 EBV BZLF1 RAKFKQLL transitional T cells between effector and memory populations PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-B*08:01 B2M MHCI -7258 chip0423_814999 10.36 8.52 Chip2 T1D_4 T1D TGTGCCAGCAGCCAAGTCAACAACCCGGGGGATGGCTACACCTTC CASSQVNNPGDGYTF TRBV14*01 TRBJ1-2*01 31.0 910.0 _CASSQVNNPGDGYTF 94 6896 EBNA3A-158-166 EBV 0.72 444 EBNA3A-158-166 213 6683 10 EBV EBNA3A QAKWRLQTL effector memory T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-B*08:01 B2M MHCI -7259 chip0423_481093 9.16 12.03 Chip2 T1D_5 T1D TGTGCAGAGATGGAAACCTCCTACGACAAGGTGATATTT CAEMETSYDKVIF TRAV13-2*01 TRAJ50*01 1.0 51.0 TGTGCCAGCAGCTCCTTAAGCGGGGGGGCAGGAAATGAGCAGTTCTTC CASSSLSGGAGNEQFF TRBV7-9*01 TRBJ2-1*01 33.0 1472.0 CAEMETSYDKVIF_CASSSLSGGAGNEQFF 27 3290 BZLF1-190-197 EBV 0.79 2156 BZLF1-190-197 185 3105 7 EBV BZLF1 RAKFKQLL transitional T cells between effector and memory populations PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-B*08:01 B2M MHCI -7260 chip0423_121099 -1.58 7.14 Chip2 T1D_5 T1D TGTGCTGTTCGAACTGACAGCTGGGGGAAATTGCAGTTT CAVRTDSWGKLQF TRAV1-2*01 TRAJ24*01 14.0 901.0 TGTGCCAGCAGTTCACCCGGGACAGGGAGGGGTGGCTACACCTTC CASSSPGTGRGGYTF TRBV27*01 TRBJ1-2*01 27.0 1508.0 CAVRTDSWGKLQF_CASSSPGTGRGGYTF 1 8154 INS-WMR-8 INS 0.44 17 NEG 167 7987 3 HomoSapiens INS WMRLLPLL Naive T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-B*08:01 B2M MHCI -7261 chip0423_552209 15.08 12.75 Chip2 T1D_5 T1D TGTGCAGCGGGGGAAACCTCCTACGACAAGGTGATATTT CAAGETSYDKVIF TRAV13-1*01 TRAJ50*01 19.0 1133.0 TGTGCCAAACCTGATGGCGGGGAAGACACTGAAGCTTTCTTT CAKPDGGEDTEAFF TRBV6-8*01 TRBJ1-1*01 51.0 1643.0 CAAGETSYDKVIF_CAKPDGGEDTEAFF 4 2057 BZLF1-190-197 EBV 0.67 2156 NEG 190 1867 12 EBV BZLF1 RAKFKQLL effector T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-B*08:01 B2M MHCI -7262 chip0423_110837 6.92 10.33 Chip2 T1D_6 T1D TGCGCCAGCAGTGACATTAGGGAGGGGCAGGGTGAAGCTTTCTTT CASSDIREGQGEAFF TRBV10-2*01 TRBJ1-1*01 52.0 2288.0 _CASSDIREGQGEAFF 37 10032 EBNA3A-158-166 EBV 0.79 444 EBNA3A-158-166 194 9838 7 EBV EBNA3A QAKWRLQTL transitional T cells between effector and memory populations PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-B*08:01 B2M MHCI -7263 chip0423_828799 12.23 6.55 Chip2 T1D_5 T1D TGTGCTCTGAGCTTCCCAAAGCGCAGTGGAGGTAGCAACTATAAACTGACATTT CALSFPKRSGGSNYKLTF TRAV9-2*01 TRAJ53*01 83.0 3226.0 CALSFPKRSGGSNYKLTF_ 1 5442 BZLF1-190-197 EBV 0.44 2156 NEG 177 5265 10 EBV BZLF1 RAKFKQLL effector memory T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-B*08:01 B2M MHCI -7264 chip0423_694935 6.51 11.18 Chip2 T1D_6 T1D TGCGCCAGCAGTGACATTAGGGAGGGGCAGGGTGAAGCTTTCTTT CASSDIREGQGEAFF TRBV10-2*01 TRBJ1-1*01 84.0 3201.0 _CASSDIREGQGEAFF 37 8339 EBNA3A-158-166 EBV 0.88 444 NEG 190 8149 7 EBV EBNA3A QAKWRLQTL transitional T cells between effector and memory populations PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-B*08:01 B2M MHCI -7265 chip0423_715622 7.09 12.66 Chip2 T1D_6 T1D _ 6746 5270 ROTA-VP6 ROTA 0.52 47 ROTA-VP6 190 5080 7 RotavirusA VP6 TLLANVTAV transitional T cells between effector and memory populations PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*02:01 B2M MHCI -7266 chip0423_473546 13.89 9.2 Chip2 T1D_4 T1D TGTGCCAGCAGCTTAGCGGTCGGAGAAGGGCCCCAGCATTTT CASSLAVGEGPQHF TRBV7-9*01 TRBJ1-5*01 12.0 455.0 _CASSLAVGEGPQHF 113 4866 BZLF1-190-197 EBV 0.94 2156 BZLF1-190-197 167 4699 12 EBV BZLF1 RAKFKQLL effector T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-B*08:01 B2M MHCI -7267 chip0423_307501 14.3 7.9 Chip2 T1D_5 T1D TGCAGTGGGTCGGGCTTTGCCTACGACCAGTCCTTC CSGSGFAYDQSF TRBV20-1*01 TRBJ2-7*01 11.0 1125.0 _CSGSGFAYDQSF 1 2657 BZLF1-190-197 EBV 0.77 2156 NEG 172 2485 10 EBV BZLF1 RAKFKQLL effector memory T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-B*08:01 B2M MHCI -7268 chip0423_592694 -0.48 6.46 Chip2 T1D_6 T1D TGTGCCAGCAGTTTCGGACAGGGAGGGATCTACGAGCAGTACTTC CASSFGQGGIYEQYF TRBV12-3*01,TRBV12-4*01 TRBJ2-7*01 84.0 4833.0 _CASSFGQGGIYEQYF 1 9174 GAD2-HPR-8 GAD65 0.72 9 GAD2-HPR-8 162 9012 3 HomoSapiens GAD2 HPRYFNQL Naive T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-B*08:01 B2M MHCI -7269 chip0423_794801 14.0 8.21 Chip2 T1D_4 T1D TGTGCTGTGAGTGATGGAGAAGGAGCCCAGAAGCTGGTATTT CAVSDGEGAQKLVF TRAV8-6*01 TRAJ54*01 19.0 881.0 TGTGCCAGCAGCTTAACGGTTCTGGCAGGTCCAAACACTGAAGCTTTCTTT CASSLTVLAGPNTEAFF TRBV7-3*01 TRBJ1-1*01 48.0 1700.0 CAVSDGEGAQKLVF_CASSLTVLAGPNTEAFF 44 4006 BZLF1-190-197 EBV 0.9 2156 BZLF1-190-197 198 3808 10 EBV BZLF1 RAKFKQLL effector memory T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-B*08:01 B2M MHCI -7270 chip0423_512406 14.44 10.51 Chip2 T1D_5 T1D TGTGCAGGGCAAAGGGAAACCTCCTACGACAAGGTGATATTT CAGQRETSYDKVIF TRAV25*01 TRAJ50*01 8.0 294.0 TGTGCCAGCTCCCAGTTGGGGGGGGTTTACAATGAGCAGTTCTTC CASSQLGGVYNEQFF TRBV7-9*01 TRBJ2-1*01 22.0 1296.0 CAGQRETSYDKVIF_CASSQLGGVYNEQFF 9 4088 BZLF1-190-197 EBV 0.6 2156 BZLF1-190-197 175 3913 12 EBV BZLF1 RAKFKQLL effector T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-B*08:01 B2M MHCI -7271 chip0423_650721 9.86 7.0 Chip2 T1D_5 T1D TGTGCAGCAACGGAAACCTCCTACGACAAGGTGATATTT CAATETSYDKVIF TRAV13-1*01 TRAJ50*01 9.0 1161.0 TGTGCCAGCAGCCCTCTTGGGAGCAATGAAAAACTGTTTTTT CASSPLGSNEKLFF TRBV7-9*01 TRBJ1-4*01 93.0 2677.0 CAATETSYDKVIF_CASSPLGSNEKLFF 25 8690 BZLF1-190-197 EBV 0.82 2156 NEG 190 8500 10 EBV BZLF1 RAKFKQLL effector memory T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-B*08:01 B2M MHCI -7272 chip0423_230817 0.11 8.7 Chip2 T1D_6 T1D TGTGCCGTCGATAGGAGCAACATGCTCACCTTT CAVDRSNMLTF TRAV12-2*01 TRAJ39*01 40.0 5521.0 TGTGCCAGCAGCCCTATTACATTGACAGGTCTCAATGAGCAGTTCTTC CASSPITLTGLNEQFF TRBV3-1*01 TRBJ2-1*01 43.0 3323.0 CAVDRSNMLTF_CASSPITLTGLNEQFF 1 6754 PGT-178 PGT 0.49 1480 PGT-178 180 6574 4 HomoSapiens PGT LLAGIGTVPI Naive T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*02:01 B2M MHCI -7273 chip0423_137921 6.63 11.47 Chip2 T1D_6 T1D TGTGCCAGTAGTCCCAGGGCCGCAGATACGCAGTATTTT CASSPRAADTQYF TRBV19*01 TRBJ2-3*01 29.0 1584.0 _CASSPRAADTQYF 2 5687 M1 FLU 0.4 1250 NEG 183 5504 7 InfluenzaA M1 GILGFVFTL transitional T cells between effector and memory populations PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*02:01 B2M MHCI -7274 chip0423_817187 12.85 6.94 Chip2 T1D_5 T1D TGTGCAGCAAGTGAAACCTCCTACGACAAGGTGATATTT CAASETSYDKVIF TRAV13-1*01 TRAJ50*01 6.0 472.0 TGCATCCTGCCTCTTGCTGGTGGTACTTGCTGTGGGAAGCTGACATTT CILPLAGGTCCGKLTF TRAV26-2*01 TRAJ52*01 6.0 291.0 0.4 TGTGCCAGCTCACCACCGCGTGGGGGCAACACCGGGGCGCTGTTTTTT CASSPPRGGNTGALFF TRBV18*01 TRBJ2-2*01 23.0 793.0 CAASETSYDKVIF_CASSPPRGGNTGALFF 1 5350 BZLF1-190-197 EBV 0.95 2156 BZLF1-190-197 207 5143 10 EBV BZLF1 RAKFKQLL effector memory T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-B*08:01 B2M MHCI -7275 chip0423_745248 -2.45 9.77 Chip2 T1D_6 T1D TGCGCCAGCAGCGGCCAGGGGGGTGAAACACTGTTTTTT CASSGQGGETLFF TRBV5-1*01 TRBJ1-4*01 13.0 435.0 _CASSGQGGETLFF 1 7310 PGT-178 PGT 0.64 1480 PGT-178 179 7131 3 HomoSapiens PGT LLAGIGTVPI Naive T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*02:01 B2M MHCI -7276 chip0423_335146 13.28 9.52 Chip2 T1D_4 T1D TGTGCTGTGAGTGATGGAGAAGGAGCCCAGAAGCTGGTATTT CAVSDGEGAQKLVF TRAV8-6*01 TRAJ54*01 45.0 2006.0 TGTGCCAGCAGCTTAACGGTTCTGGCAGGTCCAAACACTGAAGCTTTCTTT CASSLTVLAGPNTEAFF TRBV7-3*01 TRBJ1-1*01 4.0 74.0 CAVSDGEGAQKLVF_CASSLTVLAGPNTEAFF 44 4378 BZLF1-190-197 EBV 0.75 2156 BZLF1-190-197 211 4167 10 EBV BZLF1 RAKFKQLL effector memory T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-B*08:01 B2M MHCI -7277 chip0423_154327 -1.18 8.53 Chip2 T1D_4 T1D TGTGCAATGGGGCTAGGCTTT CAMGLGF TRAV12-3*01 TRAJ27*01 7.0 33.0 TGTGCCAGCAGTCCCACTCCCGGCGGGAGTTTTCACGAGCAGTACTTC CASSPTPGGSFHEQYF TRBV27*01 TRBJ2-7*01 17.0 863.0 CAMGLGF_CASSPTPGGSFHEQYF 1 9445 PGT-178 PGT 0.58 1480 PGT-178 159 9286 3 HomoSapiens PGT LLAGIGTVPI Naive T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*02:01 B2M MHCI -7278 chip0423_622893 -2.22 9.58 Chip2 T1D_6 T1D TGTGCTACGGTCAATTATGGAGGAAGCCAAGGAAATCTCATCTTT CATVNYGGSQGNLIF TRAV17*01 TRAJ42*01 216.0 5594.0 CATVNYGGSQGNLIF_ 1 6391 ZNT8-293-300 ZNT8 0.8 17 ZNT8-293-300 176 6215 3 HomoSapiens ZNT8 LAVDGVLSV Naive T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*02:01 B2M MHCI -7279 chip0423_406468 10.21 6.71 Chip2 T1D_5 T1D TGTGCAATGGGGGCCATTGCGGGGGCTTTCTACCTCTTCTTT CAMGAIAGAFYLFF TRAV14/DV4*01 TRAJ36*01 5.0 255.0 TGCGCCAGCAGCCTCAGTTCGGGGGGCCGTGGCGAGCAGTACTTC CASSLSSGGRGEQYF TRBV4-1*01 TRBJ2-7*01 19.0 802.0 CAMGAIAGAFYLFF_CASSLSSGGRGEQYF 1 8323 BZLF1-190-197 EBV 0.77 2156 BZLF1-190-197 195 8128 10 EBV BZLF1 RAKFKQLL effector memory T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-B*08:01 B2M MHCI -7280 chip0423_718706 11.0 8.38 Chip2 T1D_4 T1D TGTGCTGTCAATTCAGGAAACACACCTCTTGTCTTT CAVNSGNTPLVF TRAV1-2*01 TRAJ29*01 14.0 2023.0 TGTGCCAGCAGCCAAGTCAGCACCCCGGGGGATGGCTACACCTTC CASSQVSTPGDGYTF TRBV14*01 TRBJ1-2*01 13.0 288.0 CAVNSGNTPLVF_CASSQVSTPGDGYTF 1 5900 EBNA3A-158-166 EBV 0.76 444 EBNA3A-158-166 186 5714 10 EBV EBNA3A QAKWRLQTL effector memory T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-B*08:01 B2M MHCI -7281 chip0423_557141 10.54 7.19 Chip2 T1D_6 T1D TGCGCCAGCAGTGACATTAGGGCGGGGCAGGGTGAAGCTTTCTTT CASSDIRAGQGEAFF TRBV10-2*01 TRBJ1-1*01 13.0 584.0 _CASSDIRAGQGEAFF 1 6718 EBNA3A-158-166 EBV 1.0 444 NEG 210 6508 10 EBV EBNA3A QAKWRLQTL effector memory T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-B*08:01 B2M MHCI -7282 chip0423_812080 -3.81 8.05 Chip2 T1D_4 T1D TGTGCCAGCAGTTGGTCCCCAGCCATGAACACTGAAGCTTTCTTT CASSWSPAMNTEAFF TRBV6-5*01 TRBJ1-1*01 33.0 1063.0 _CASSWSPAMNTEAFF 1 6603 ZNT8-YAK-9 ZNT8 0.72 59 ZNT8-YAK-9 152 6451 2 HomoSapiens ZNT8 YAKWKLCSA Naive T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-B*08:01 B2M MHCI -7283 chip0423_192668 -2.56 10.59 Chip2 T1D_4 T1D TGTGCAATGAGCATATCTAACTTTGGAAATGAGAAATTAACCTTT CAMSISNFGNEKLTF TRAV12-3*01 TRAJ48*01 147.0 6072.0 CAMSISNFGNEKLTF_ 13 5849 PGT-178 PGT 0.69 1480 PGT-178 169 5680 3 HomoSapiens PGT LLAGIGTVPI Naive T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*02:01 B2M MHCI -7284 chip0423_755098 13.96 9.06 Chip2 T1D_5 T1D _ 6746 5670 BZLF1-190-197 EBV 0.71 2156 BZLF1-190-197 181 5489 12 EBV BZLF1 RAKFKQLL effector T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-B*08:01 B2M MHCI -7285 chip0423_726686 -3.4 9.4 Chip2 T1D_4 T1D TGTGCCAGCAGTTACTCCGGACAGGGAACGAGCGAGCAGTACTTC CASSYSGQGTSEQYF TRBV6-2*01,TRBV6-3*01 TRBJ2-7*01 62.0 2950.0 _CASSYSGQGTSEQYF 1 6699 PGT-178 PGT 0.75 1480 PGT-178 146 6553 2 HomoSapiens PGT LLAGIGTVPI Naive T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*02:01 B2M MHCI -7286 chip0423_857772 13.04 12.2 Chip2 T1D_6 T1D TGCGCCAGCAGTCTCCCTCCATGGGGCTGCCTACAATGAGCAGTTCTTC CASSLPPW??gAAYNEQFF TRBV4-3*01 TRBJ2-1*01 34.0 1840.0 _CASSLPPW??gAAYNEQFF 9 3171 EBNA3A-193-201 EBV 0.62 1022 NEG 175 2996 11 EBV EBNA3A FLRGRAYGL effector T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-B*08:01 B2M MHCI -7287 chip0423_750706 11.05 10.25 Chip2 T1D_4 T1D TGTGCCAGCAGCCAAGTCAACAACCCGGGGGATGGCTACACCTTC CASSQVNNPGDGYTF TRBV14*01 TRBJ1-2*01 30.0 491.0 _CASSQVNNPGDGYTF 94 6610 EBNA3A-158-166 EBV 0.82 444 EBNA3A-158-166 182 6428 9 EBV EBNA3A QAKWRLQTL effector memory T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-B*08:01 B2M MHCI -7288 chip0423_499175 6.76 11.66 Chip2 T1D_6 T1D TGTGCTCGATACTGGAGCCAATAGTACGCTGACATTT CARYWS??cNSTLTF TRAV38-1*01 TRAJ56*01 21.0 2055.0 CARYWS??cNSTLTF_ 1 6406 M1 FLU 0.5 1250 NEG 161 6245 7 InfluenzaA M1 GILGFVFTL transitional T cells between effector and memory populations PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*02:01 B2M MHCI -7289 chip0423_376143 12.61 8.19 Chip2 T1D_5 T1D TGTGCCGTGAACTTGGGGGGAAACACACCTCTTGTCTTT CAVNLGGNTPLVF TRAV12-2*01 TRAJ29*01 30.0 2060.0 TGTGCTAGTGTTTCGGACAGGTTATACAATGAGCAGTTCTTC CASVSDRLYNEQFF TRBV12-5*01 TRBJ2-1*01 48.0 3346.0 CAVNLGGNTPLVF_CASVSDRLYNEQFF 2 2178 BZLF1-190-197 EBV 0.53 2156 NEG 185 1993 10 EBV BZLF1 RAKFKQLL effector memory T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-B*08:01 B2M MHCI -7290 chip0423_36257 11.51 9.91 Chip2 T1D_4 T1D TGTGCCAGCAGCCAAGTCAACAACCCGGGGGATGGCTACACCTTC CASSQVNNPGDGYTF TRBV14*01 TRBJ1-2*01 32.0 853.0 _CASSQVNNPGDGYTF 94 4713 EBNA3A-158-166 EBV 0.64 444 EBNA3A-158-166 217 4496 9 EBV EBNA3A QAKWRLQTL effector memory T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-B*08:01 B2M MHCI -7291 chip0423_157200 7.22 12.35 Chip2 T1D_6 T1D TGTGTTGTGAGTGTTCGGCTAGCACCCCCGGCCAACTAATCTTT CVVSVRLg?cTPGQLIF TRAV8-2*01 TRAJ37*01 2.0 144.0 CVVSVRLg?cTPGQLIF_ 1 6553 INS-WMR-8 INS 0.79 17 INS-WMR-8 174 6379 7 HomoSapiens INS WMRLLPLL transitional T cells between effector and memory populations PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-B*08:01 B2M MHCI -7292 chip0423_879464 9.01 7.89 Chip2 T1D_5 T1D TGTGCAGCCCAGGAAACCTCCTACGACAAGGTGATATTT CAAQETSYDKVIF TRAV13-1*01 TRAJ50*01 28.0 2068.0 TGTGCCAGCAGCCACACAAGGAACACTGAAGCTTTCTTT CASSHTRNTEAFF TRBV7-9*01 TRBJ1-1*01 109.0 4166.0 CAAQETSYDKVIF_CASSHTRNTEAFF 1 7493 BZLF1-190-197 EBV 0.54 2156 BZLF1-190-197 179 7314 8 EBV BZLF1 RAKFKQLL effector memory T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-B*08:01 B2M MHCI -7293 chip0423_710219 11.44 8.07 Chip2 T1D_6 T1D TGTGCCAGCAGCTTGGGACAGGCCTACGAGCAGTACTTC CASSLGQAYEQYF TRBV7-8*01 TRBJ2-7*01 20.0 1273.0 _CASSLGQAYEQYF 175 4513 EBNA3A-193-201 EBV 0.67 1022 NEG 192 4321 10 EBV EBNA3A FLRGRAYGL effector memory T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-B*08:01 B2M MHCI -7294 chip0423_471960 -3.06 9.09 Chip2 T1D_6 T1D TGTGCTGCTCAATAACAATGACATGCGCTTT CAAQ*??cNDMRF TRAV8-3*01 TRAJ43*01 1.0 11.0 TGTGCCAGCAGTGGAGGGCCAGGCTACGAGCAGTACTTC CASSGGPGYEQYF TRBV7-2*01 TRBJ2-7*01 29.0 1694.0 CAAQ*??cNDMRF_CASSGGPGYEQYF 1 7220 MART1-ALA MART1 0.6 269 NEG 160 7060 2 HomoSapiens MART1 ALAGIGILTV Naive T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*02:01 B2M MHCI -7295 chip0423_619091 -1.91 10.9 Chip2 T1D_5 T1D _ 6746 5776 NP44-52 FLU 0.92 474 NP44-52 152 5624 3 InfluenzaA NP CTELKLSDY Naive T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*01:01 B2M MHCI -7296 chip0423_616444 -0.35 8.54 Chip2 T1D_6 T1D TGTGCCAGCAGTGTAGGCCAGGGGTACGAGCAGTACTTC CASSVGQGYEQYF TRBV6-1*01 TRBJ2-7*01 30.0 1300.0 _CASSVGQGYEQYF 1 8851 MART1-ALA MART1 0.45 269 MART1-ALA 182 8669 4 HomoSapiens MART1 ALAGIGILTV Naive T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*02:01 B2M MHCI -7297 chip0423_61128 -2.02 12.67 Chip2 T1D_4 T1D TGTGCAATGAGCGCGGGAGGATACAGCACCCTCACCTTT CAMSAGGYSTLTF TRAV12-3*01 TRAJ11*01 88.0 6412.0 TGTGCCAGTAGCGACAACAACTATGGCTACACCTTC CASSDNNYGYTF TRBV19*01 TRBJ1-2*01 39.0 2692.0 CAMSAGGYSTLTF_CASSDNNYGYTF 1 3596 ZNT8-153-161 ZNT8 0.6 41 NEG 173 3423 1 HomoSapiens ZNT8 VVTGVLVYL Naive T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*02:01 B2M MHCI -7298 chip0423_345659 10.58 8.4 Chip2 healthy_4 healthy TGCATCCTTCCCCTAGCTGGTGGTACTAGCTATGGAAAGCTGACATTT CILPLAGGTSYGKLTF TRAV26-2*01 TRAJ52*01 29.0 1223.0 TGTGCCAGCAGCTCCGAACAGGCCTACGAGCAGTACTTC CASSSEQAYEQYF TRBV7-8*01 TRBJ2-7*01 1.0 46.0 CILPLAGGTSYGKLTF_CASSSEQAYEQYF 1 4858 EBNA3A-193-201 EBV 0.65 1022 NEG 181 4677 10 EBV EBNA3A FLRGRAYGL effector memory T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-B*08:01 B2M MHCI -7299 chip0423_100560 11.25 10.42 Chip2 T1D_4 T1D TGTGCCAGCAGCCAAGTCAACAACCCGGGGGATGGCTACACCTTC CASSQVNNPGDGYTF TRBV14*01 TRBJ1-2*01 3.0 120.0 _CASSQVNNPGDGYTF 94 4884 EBNA3A-158-166 EBV 0.81 444 NEG 185 4699 9 EBV EBNA3A QAKWRLQTL effector memory T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-B*08:01 B2M MHCI -7300 chip0423_76993 -1.94 12.08 Chip2 T1D_6 T1D TGTGCCAGCAGTTTAACCATCTGGGAAAAACTGTTTTTT CASSLTIWEKLFF TRBV28*01 TRBJ1-4*01 17.0 553.0 _CASSLTIWEKLFF 1 5558 MART1-A28L MART1 0.7 84 MART1-A28L 176 5382 1 HomoSapiens MART1 ALGIGILTV Naive T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*02:01 B2M MHCI -7301 chip0423_41953 -3.43 9.87 Chip2 T1D_4 T1D TGTGCTCTGAGTGAGGTGAATTCAGGGAACGCACCTCTTGTCTTT CALSEVNSGNAPLVF TRAV19*01 TRAJ29*01 74.0 2332.0 TGTGCCAGCAGCGTAGAGGGACCGAGCTCATCAGATACGCAGTATTTT CASSVEGPSSSDTQYF TRBV9*01 TRBJ2-3*01 8.0 536.0 CALSEVNSGNAPLVF_CASSVEGPSSSDTQYF 1 5232 EBV-LMP2A EBV 0.6 700 NEG 152 5080 2 EBV LMP2A CLGGLLTMV Naive T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*02:01 B2M MHCI -7302 chip0423_226892 12.83 8.28 Chip2 T1D_6 T1D TGTGCAGGAGCCGCAACTGACAGCTGGGGGAAAATTGCAGTT CAGAATDSWGKIAV TRAV27*01 TRAJ24*01 21.0 1043.0 TGCAGCGCTTACTCTACAGGGGACTATGGCTACACCTTC CSAYSTGDYGYTF TRBV29-1*01 TRBJ1-2*01 6.0 266.0 CAGAATDSWGKIAV_CSAYSTGDYGYTF 1 3683 EBNA3A-158-166 EBV 0.8 444 NEG 184 3499 10 EBV EBNA3A QAKWRLQTL effector memory T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-B*08:01 B2M MHCI -7303 chip0423_184622 11.14 11.8 Chip2 T1D_4 T1D TGTGCCAGCAGCTTAACGGTTCTGGCAGGTCCAAACACTGAAGCTTTCTTT CASSLTVLAGPNTEAFF TRBV7-3*01 TRBJ1-1*01 63.0 1673.0 _CASSLTVLAGPNTEAFF 32 3435 BZLF1-190-197 EBV 0.81 2156 BZLF1-190-197 186 3249 9 EBV BZLF1 RAKFKQLL effector memory T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-B*08:01 B2M MHCI -7304 chip0423_482623 14.41 10.56 Chip2 T1D_6 T1D TGCATCCTCCCACTTGCTGGTGGTACTAGCTATGGAAAGCTGACATTT CILPLAGGTSYGKLTF TRAV26-2*01 TRAJ52*01 78.0 2905.0 TGTGCCAGCAGCTTGGGACAGGCCTACGAGCAGTACTTC CASSLGQAYEQYF TRBV7-8*01 TRBJ2-7*01 29.0 1252.0 CILPLAGGTSYGKLTF_CASSLGQAYEQYF 308 3812 EBNA3A-193-201 EBV 0.58 1022 NEG 200 3612 12 EBV EBNA3A FLRGRAYGL effector T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-B*08:01 B2M MHCI -7305 chip0423_294727 5.25 9.0 Chip2 healthy_3 healthy TGCATCGTCAGAACCTATACCTCAGGAACCTACAAATACATCTTT CIVRTYTSGTYKYIF TRAV26-1*01 TRAJ40*01 17.0 574.0 CIVRTYTSGTYKYIF_ 1 2700 M1 FLU 0.6 1250 NEG 178 2522 6 InfluenzaA M1 GILGFVFTL central memory T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*02:01 B2M MHCI -7306 chip0423_17084 -1.95 9.37 Chip2 T1D_4 T1D _ 6746 5549 PGT-178 PGT 0.5 1480 PGT-178 162 5387 3 HomoSapiens PGT LLAGIGTVPI Naive T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*02:01 B2M MHCI -7307 chip0423_304303 -0.39 7.38 Chip2 T1D_6 T1D _ 6746 7259 PGT-178 PGT 0.7 1480 PGT-178 166 7093 3 HomoSapiens PGT LLAGIGTVPI Naive T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*02:01 B2M MHCI -7308 chip0423_280921 7.84 8.16 Chip2 T1D_5 T1D TGTGCAGCGGCGGAAACCTCCTACGACAAGGTGATATTT CAAAETSYDKVIF TRAV13-1*01 TRAJ50*01 17.0 1138.0 TGTGCCAGCCAACTAGCGGGAGGCACCGGGGAGCTGTTTTTT CASQLAGGTGELFF TRBV24-1*01 TRBJ2-2*01 22.0 1493.0 CAAAETSYDKVIF_CASQLAGGTGELFF 131 4258 BZLF1-190-197 EBV 0.5 2156 NEG 211 4047 8 EBV BZLF1 RAKFKQLL effector memory T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-B*08:01 B2M MHCI -7309 chip0423_736725 8.81 8.08 Chip2 T1D_5 T1D TGTGCAGCAACTGAAGGTCAGAATTTTGTCTTT CAATEGQNFVF TRAV13-1*01 TRAJ26*01 5.0 257.0 TGTGCCAGCAGCTTGTCTAGCGGGGGGGCCACAGATACGCAGTATTTT CASSLSSGGATDTQYF TRBV7-8*01 TRBJ2-3*01 57.0 2755.0 CAATEGQNFVF_CASSLSSGGATDTQYF 1 6126 BZLF1-190-197 EBV 0.81 2156 BZLF1-190-197 197 5929 8 EBV BZLF1 RAKFKQLL effector memory T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-B*08:01 B2M MHCI -7310 chip0423_549330 12.13 10.72 Chip2 T1D_5 T1D TGTGCCAGCAGCTCCTTAAGCGGAGGGGCAGGAAATGAGCAGTTCTTC CASSSLSGGAGNEQFF TRBV7-9*01 TRBJ2-1*01 19.0 983.0 _CASSSLSGGAGNEQFF 33 4310 BZLF1-190-197 EBV 0.69 2156 NEG 167 4143 9 EBV BZLF1 RAKFKQLL effector memory T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-B*08:01 B2M MHCI -7311 chip0423_184186 -2.36 8.42 Chip2 T1D_5 T1D TGCAGCGCCGGCGGGAACACTGAAGCTTTCTTT CSAGGNTEAFF TRBV29-1*01 TRBJ1-1*01 2.0 78.0 _CSAGGNTEAFF 1 7058 GFAP-ALD-9 GFAP 0.49 11 GFAP-ALD-9 151 6907 3 HomoSapiens GFAP ALDIEIATY Naive T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*01:01 B2M MHCI -7312 chip0423_36048 4.97 11.77 Chip2 healthy_4 healthy TGTGCCAGCAGTGAATTAGGGGATACGCAGTATTTT CASSELGDTQYF TRBV25-1*01 TRBJ2-3*01 52.0 2552.0 _CASSELGDTQYF 15 4250 M1 FLU 1.0 1250 NEG 162 4088 6 InfluenzaA M1 GILGFVFTL central memory T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*02:01 B2M MHCI -7313 chip0423_22092 6.35 10.02 Chip2 T1D_5 T1D _ 6746 6119 BZLF1-190-197 EBV 0.9 2156 NEG 169 5950 6 EBV BZLF1 RAKFKQLL central memory T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-B*08:01 B2M MHCI -7314 chip0423_708609 5.9 13.65 Chip2 T1D_4 T1D TGTGCAGGAGCTGCGGGAGGACGCCACGGAAATCTCATCTTT CAGAAGGRHGNLIF TRAV27*01 TRAJ42*01 11.0 588.0 TGTGCCAGTAGTGGCAGGGCCACCGGGGAGCTGTTTTTT CASSGRATGELFF TRBV19*01 TRBJ2-2*01 24.0 1265.0 CAGAAGGRHGNLIF_CASSGRATGELFF 1 5406 M1 FLU 0.71 1250 NEG 164 5242 7 InfluenzaA M1 GILGFVFTL transitional T cells between effector and memory populations PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*02:01 B2M MHCI -7315 chip0423_295373 13.2 6.81 Chip2 T1D_4 T1D TGTGCTGTCACCTCCTCGCGATGCCCCGCTCATCTTT CAVTSS??cDAPLIF TRAV8-4*01 TRAJ30*01 24.0 1987.0 TGTGCCAGCAGCGGGACGGCGAGCTCCTACAATGAGCAGTTCTTC CASSGTASSYNEQFF TRBV27*01 TRBJ2-1*01 43.0 3199.0 CAVTSS??cDAPLIF_CASSGTASSYNEQFF 1 4827 EBV-BLMF1 EBV 0.67 2531 NEG 172 4655 10 EBV BLMF1 GLCTLVAML effector memory T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*02:01 B2M MHCI -7316 chip0423_882967 9.85 9.61 Chip2 T1D_4 T1D TGTGCAGGTGAAGGGGCTGGGAGTTACCAACTCACTTTC CAGEGAGSYQLTF TRAV25*01 TRAJ28*01 3.0 24.0 CAGEGAGSYQLTF_ 2 5378 EBV-LMP2A EBV 0.77 700 NEG 189 5189 9 EBV LMP2A CLGGLLTMV effector memory T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*02:01 B2M MHCI -7317 chip0423_153968 15.53 10.65 Chip2 healthy_3 healthy TGTGCCAGCAGTGAAATGTGGGGAGCACCCCTCCACTTT CASSEMWGAPLHF TRBV2*01 TRBJ1-6*01 1.0 52.0 _CASSEMWGAPLHF 14 3634 NP44-52 FLU 0.86 474 NP44-52 170 3464 12 InfluenzaA NP CTELKLSDY effector T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*01:01 B2M MHCI -7318 chip0423_7413 12.45 10.66 Chip2 T1D_4 T1D TGTGCCAGCAGCTTAGCGGTCGGAGAAGGGCCCCAGCATTTT CASSLAVGEGPQHF TRBV7-9*01 TRBJ1-5*01 118.0 4370.0 _CASSLAVGEGPQHF 113 4094 BZLF1-190-197 EBV 0.91 2156 BZLF1-190-197 173 3921 9 EBV BZLF1 RAKFKQLL effector memory T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-B*08:01 B2M MHCI -7319 chip0423_646612 15.24 9.72 Chip2 T1D_4 T1D TGCATCGTCAGAGAGGGAGGAGGTGCTGACGGACTCACCTTT CIVREGGGADGLTF TRAV26-1*01 TRAJ45*01 3.0 111.0 TGTGCCAGCAGCTTAGCGGTCGGAGAAGGGCCCCAGCATTTT CASSLAVGEGPQHF TRBV7-9*01 TRBJ1-5*01 61.0 1928.0 CIVREGGGADGLTF_CASSLAVGEGPQHF 68 4134 BZLF1-190-197 EBV 0.81 2156 BZLF1-190-197 193 3941 12 EBV BZLF1 RAKFKQLL effector T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-B*08:01 B2M MHCI -7320 chip0423_621920 6.06 13.72 Chip2 T1D_6 T1D TGTGCTGTGGGAGGCCTCCATACTGGAGGCTTCCACACTGTCGTT CAVGGLHTGGFHTVV TRAV3*01 TRAJ9*01 21.0 935.0 CAVGGLHTGGFHTVV_ 1 5039 M1 FLU 0.8 1250 NEG 170 4869 7 InfluenzaA M1 GILGFVFTL transitional T cells between effector and memory populations PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*02:01 B2M MHCI -7321 chip0423_96210 9.21 8.12 Chip2 T1D_4 T1D TGCATCGTCAGAGAGGGAGGAGGTGCTGACGGACTCACCTTT CIVREGGGADGLTF TRAV26-1*01 TRAJ45*01 1.0 76.0 TGTGCCAGCAGCTTAGCGGTCGGAGAAGGGCCCCAGCATTTT CASSLAVGEGPQHF TRBV7-9*01 TRBJ1-5*01 83.0 3662.0 CIVREGGGADGLTF_CASSLAVGEGPQHF 68 5127 BZLF1-190-197 EBV 0.85 2156 BZLF1-190-197 184 4943 8 EBV BZLF1 RAKFKQLL effector memory T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-B*08:01 B2M MHCI -7322 chip0423_19994 12.29 6.47 Chip2 T1D_6 T1D TGTGCAGGAGCCGCAACTGACAGCTGGGGGAAATTGCAGTTT CAGAATDSWGKLQF TRAV27*01 TRAJ24*01 73.0 2375.0 TGCAGCGCTTACTCTACAGGGGACTATGGCTACACCTTC CSAYSTGDYGYTF TRBV29-1*01 TRBJ1-2*01 16.0 504.0 CAGAATDSWGKLQF_CSAYSTGDYGYTF 2 6345 EBNA3A-158-166 EBV 0.75 444 NEG 192 6153 10 EBV EBNA3A QAKWRLQTL effector memory T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-B*08:01 B2M MHCI -7323 chip0423_697246 10.48 11.19 Chip2 T1D_5 T1D TGTGCAGCGGCGGAAACCTCCTACGACAAGGTGATATTT CAAAETSYDKVIF TRAV13-1*01 TRAJ50*01 22.0 2039.0 TGTGCCAGCCAACTAGCGGGAGGCACCGGGGAGCTGTTTTTT CASQLAGGTGELFF TRBV24-1*01 TRBJ2-2*01 18.0 974.0 CAAAETSYDKVIF_CASQLAGGTGELFF 131 2907 BZLF1-190-197 EBV 1.0 2156 NEG 190 2717 9 EBV BZLF1 RAKFKQLL effector memory T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-B*08:01 B2M MHCI -7324 chip0423_681733 11.2 11.81 Chip2 T1D_4 T1D _ 6746 2607 BZLF1-190-197 EBV 1.0 2156 NEG 187 2420 9 EBV BZLF1 RAKFKQLL effector memory T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-B*08:01 B2M MHCI -7325 chip0423_367148 6.2 10.3 Chip2 T1D_6 T1D TGCGCCAGCAGTGACATTAGGGAGGGGCAGGGTGAAGCTTTCTTT CASSDIREGQGEAFF TRBV10-2*01 TRBJ1-1*01 52.0 2235.0 _CASSDIREGQGEAFF 37 8391 EBNA3A-158-166 EBV 0.88 444 NEG 171 8220 6 EBV EBNA3A QAKWRLQTL central memory T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-B*08:01 B2M MHCI -7326 chip0423_348413 -4.04 10.16 Chip2 T1D_6 T1D TGCATCGTCAGAGTCTTATTTTCCAATGCCAGGCCCATGTTT CIVRVLFSNARPMF TRAV26-1*01 TRAJ31*01 23.0 1101.0 TGTGCCACAAAGACAGGGATCGACGAGCAGTACTTC CATKTGIDEQYF TRBV12-3*01,TRBV12-4*01 TRBJ2-7*01 12.0 729.0 CIVRVLFSNARPMF_CATKTGIDEQYF 1 6704 G6PC2-NLI-8 IGRP 0.48 32 NEG 161 6543 2 HomoSapiens G6PC2 NLIFKWIL Naive T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-B*08:01 B2M MHCI -7327 chip0423_670320 11.1 9.51 Chip2 T1D_5 T1D TGTGCAGCAAGCGAAACCTCCTACGACAAGGTGATATTT CAASETSYDKVIF TRAV13-1*01 TRAJ50*01 10.0 904.0 TGCAGCGCCGGCAGGGACGGGACTAATGAAAAACTGTTTTTT CSAGRDGTNEKLFF TRBV29-1*01 TRBJ1-4*01 1.0 48.0 CAASETSYDKVIF_CSAGRDGTNEKLFF 2 4781 BZLF1-190-197 EBV 0.96 2156 BZLF1-190-197 174 4607 9 EBV BZLF1 RAKFKQLL effector memory T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-B*08:01 B2M MHCI -7328 chip0423_525663 14.76 8.5 Chip2 T1D_5 T1D TGCATCCTGATGGAAACCTCCTACGACAAGGTGATATTT CILMETSYDKVIF TRAV26-2*01 TRAJ50*01 29.0 2094.0 TGTGCCAGCAGTTTTACAGGCAACGGCGAGCAGTTCTTC CASSFTGNGEQFF TRBV12-3*01,TRBV12-4*01 TRBJ2-1*01 20.0 1286.0 CILMETSYDKVIF_CASSFTGNGEQFF 1 3605 BZLF1-190-197 EBV 0.57 2156 NEG 184 3421 12 EBV BZLF1 RAKFKQLL effector T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-B*08:01 B2M MHCI -7329 chip0423_274397 5.53 8.57 Chip2 healthy_3 healthy TGTGCAGGGCCGGGGAAGCCAAGGAAATCTCATCTTT CAGPGK??cQGNLIF TRAV27*01 TRAJ42*01 33.0 2338.0 TGTGCCAGCAGCCGCCAAGGGGGCGCAGGTGGCTACACCTTC CASSRQGGAGGYTF TRBV6-1*01 TRBJ1-2*01 1.0 62.0 CAGPGK??cQGNLIF_CASSRQGGAGGYTF 1 9549 EBV-LMP2-FLY EBV 0.5 355 NEG 176 9373 6 EBV LMP2 FLYALALLL central memory T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*02:01 B2M MHCI -7330 chip0423_724408 -4.21 11.08 Chip2 T1D_4 T1D TGTGCCAGCAGCCAAGATATGGCTAGCGGATACAATGAGCAGTTCTTC CASSQDMASGYNEQFF TRBV3-1*01 TRBJ2-1*01 22.0 1187.0 _CASSQDMASGYNEQFF 1 5114 PTPRN-HAR-8 PTPRN 0.87 13 NEG 144 4970 1 HomoSapiens PTPRN HARIKLKV Naive T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-B*08:01 B2M MHCI -7331 chip0423_236342 11.42 11.57 Chip2 T1D_4 T1D TGTGCCGTGCCCGGTTTTTCTGGTGGCTACAATAAGCTGATTTTT CAVPGFSGGYNKLIF TRAV8-1*01 TRAJ4*01 53.0 2537.0 TGTGCCAGCAGCCCCGGGGAGACGCGCGGCGAGCAGTACTTC CASSPGETRGEQYF TRBV5-6*01 TRBJ2-7*01 12.0 991.0 CAVPGFSGGYNKLIF_CASSPGETRGEQYF 1 2514 EBV-LMP1-1 EBV 1.0 237 NEG 174 2340 9 EBV LMP1 YLLEMLWRL effector memory T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*02:01 B2M MHCI -7332 chip0423_690721 0.42 8.76 Chip2 healthy_4 healthy TGTGCAACCGCCCTATCTAACTTTGGACATGAGAAATTCCCCTTT CATALSNFGHEKFPF TRAV12-3*01 TRAJ48*01 6.0 121.0 CATALSNFGHEKFPF_ 1 5154 PGT-178 PGT 0.91 1480 PGT-178 162 4992 4 HomoSapiens PGT LLAGIGTVPI Naive T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*02:01 B2M MHCI -7333 chip0423_620867 -1.04 9.41 Chip2 T1D_5 T1D TGTGCCGTACTCATGGAATATGGAAACAAACTGGTCTTT CAVLMEYGNKLVF TRAV12-2*01 TRAJ47*01 2.0 25.0 TGTGCCTGGAGTCCGCTAGGGAATGAGCAGTTCTTC CAWSPLGNEQFF TRBV30*01 TRBJ2-1*01 47.0 1964.0 CAVLMEYGNKLVF_CAWSPLGNEQFF 1 6510 GAD2-SRK-8 GAD65 0.43 10 NEG 155 6355 3 HomoSapiens GAD2 SRKHKWKL Naive T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-B*08:01 B2M MHCI -7334 chip0423_304299 11.58 9.27 Chip2 T1D_6 T1D TGCATCCTCCCACTTGCTGGTGGTACTAGCTATGGAAAGCTGACATTT CILPLAGGTSYGKLTF TRAV26-2*01 TRAJ52*01 44.0 2165.0 TGTGCCAGCAGCTTGGGACAGGCCTACGAGCAGTACTTC CASSLGQAYEQYF TRBV7-8*01 TRBJ2-7*01 15.0 675.0 CILPLAGGTSYGKLTF_CASSLGQAYEQYF 308 4604 EBNA3A-193-201 EBV 0.64 1022 NEG 202 4402 10 EBV EBNA3A FLRGRAYGL effector memory T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-B*08:01 B2M MHCI -7335 chip0423_271711 14.79 10.1 Chip2 T1D_5 T1D TGTGCAGAGATGGAAACCTCCTACGACAAGGTGATATTT CAEMETSYDKVIF TRAV13-2*01 TRAJ50*01 28.0 2484.0 CTGGCCAGCAGCTCCTTAAGCGGGGGGGCAGGAAATGAGCAGTTCTTC LASSSLSGGAGNEQFF TRBV7-9*01 TRBJ2-1*01 24.0 734.0 CAEMETSYDKVIF_LASSSLSGGAGNEQFF 1 3306 BZLF1-190-197 EBV 0.78 2156 NEG 178 3128 12 EBV BZLF1 RAKFKQLL effector T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-B*08:01 B2M MHCI -7336 chip0423_859232 5.51 11.1 Chip2 T1D_4 T1D TGCGCTGTGCGCGGGCGGCCTTCATGCTGGTGGTACTAGCTATGGAAAGCCGACATTT CAVRGRPSCtg??gtGTSYGKPTF TRAV1-1*01 TRAJ52*01 2.0 14.0 TGCAGTGCCATCGAATTCCGGGACCCTAATCAGCCCCAGCATTTT CSAIEFRDPNQPQHF TRBV20-1*01 TRBJ1-5*01 36.0 1591.0 CAVRGRPSCtg??gtGTSYGKPTF_CSAIEFRDPNQPQHF 1 8272 EBV-LMP1-1 EBV 0.65 237 EBV-LMP1-1 166 8106 6 EBV LMP1 YLLEMLWRL central memory T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*02:01 B2M MHCI -7337 chip0423_653369 -0.24 8.21 Chip2 T1D_6 T1D _ 6746 11345 NP44-52 FLU 0.5 474 NEG 161 11184 4 InfluenzaA NP CTELKLSDY Naive T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*01:01 B2M MHCI -7338 chip0423_797447 11.12 7.55 Chip2 T1D_4 T1D TGTGCCAGCAGCTTAGCGGTCGGAGAAGGGCCCCAGCATTTT CASSLAVGEGPQHF TRBV7-9*01 TRBJ1-5*01 39.0 1610.0 _CASSLAVGEGPQHF 113 4835 BZLF1-190-197 EBV 0.71 2156 BZLF1-190-197 205 4630 10 EBV BZLF1 RAKFKQLL effector memory T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-B*08:01 B2M MHCI -7339 chip0423_724452 11.67 12.53 Chip2 T1D_5 T1D TGTGCCAGCAGCCCTCTTGGGAGCAATGAAAAACTGTTTTTT CASSPLGSNEKLFF TRBV7-9*01 TRBJ1-4*01 12.0 365.0 _CASSPLGSNEKLFF 20 2526 BZLF1-190-197 EBV 1.0 2156 NEG 179 2347 11 EBV BZLF1 RAKFKQLL effector T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-B*08:01 B2M MHCI -7340 chip0423_716166 -2.67 10.8 Chip2 healthy_3 healthy TGTGCATCAGGAGGAAGCTACATACCTACATTT CASGGSYIPTF TRAV12-1*01 TRAJ6*01 9.0 939.0 TGTGCCAGCAGCCCGGGACTAGCCACCGGGGAGCTGTTTTTT CASSPGLATGELFF TRBV3-1*01 TRBJ2-2*01 13.0 382.0 CASGGSYIPTF_CASSPGLATGELFF 1 5334 PGT-178 PGT 0.47 1480 NEG 151 5183 3 HomoSapiens PGT LLAGIGTVPI Naive T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*02:01 B2M MHCI -7341 chip0423_109669 -2.69 13.05 Chip2 T1D_4 T1D TGTGTTTTGAGAATGAGCCCTTGCATCTGGCGCACGCTACATACCTACATTT CVLRMSPCat??ctGARYIPTF TRAV8-2*01 TRAJ6*01 29.0 1152.0 TGTGCCGGCGGCCCCCGGGGGCCGAGCTTTCTTG CAGGPcg??ggGRAFL TRBV2*01 TRBJ1-1*01 7.0 855.0 CVLRMSPCat??ctGARYIPTF_CAGGPcg??ggGRAFL 1 4294 PGT-178 PGT 0.9 1480 NEG 173 4121 1 HomoSapiens PGT LLAGIGTVPI Naive T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*02:01 B2M MHCI -7342 chip0423_658899 12.07 7.57 Chip2 T1D_4 T1D TGTGCCAGCCGCCACGTCGACAACCCGGGGGCTGGCTACACCTTC CASRHVDNPGAGYTF TRBV14*01 TRBJ1-2*01 2.0 155.0 _CASRHVDNPGAGYTF 1 4775 EBNA3A-158-166 EBV 0.47 444 EBNA3A-158-166 192 4583 10 EBV EBNA3A QAKWRLQTL effector memory T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-B*08:01 B2M MHCI -7343 chip0423_552019 16.23 10.48 Chip2 healthy_3 healthy TGTCCCGCAAGCGAGACCGCCTACGACAAGGTGATATTT CPASETAYDKVIF TRAV13-1*01 TRAJ50*01 2.0 7.0 CPASETAYDKVIF_ 1 4811 NP44-52 FLU 0.8 474 NEG 174 4637 12 InfluenzaA NP CTELKLSDY effector T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*01:01 B2M MHCI -7344 chip0423_148935 10.59 10.23 Chip2 T1D_4 T1D TGTGCCGTCTGGAGGGACGGAGCCTACGAGCAGTACTTC CAVWRDGAYEQYF TRBV28*01 TRBJ2-7*01 7.0 604.0 _CAVWRDGAYEQYF 12 6531 EBV-LMP1-1 EBV 0.77 237 NEG 169 6362 9 EBV LMP1 YLLEMLWRL effector memory T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*02:01 B2M MHCI -7345 chip0423_851176 16.24 11.45 Chip2 healthy_3 healthy TGTGTGGTGAACGGGGAAAATGCCAGACTCATGTTT CVVNGENARLMF TRAV12-1*01 TRAJ31*01 1.0 93.0 TGCGCCAGCAGTGAAATGTGGGGAGCACCCCTCCACTT CASSEMt?gGSTPPL TRAV18*01 TRAJ11*01 1.0 19.0 0.5 TGTGCCAGCAGCCGCCTCGGGGTTGGCACCTGGGATGAGCAGTTCTTC CASSRLGVGTWDEQFF TRBV7-9*01 TRBJ2-1*01 7.0 424.0 CVVNGENARLMF_CASSRLGVGTWDEQFF 1 2269 NP44-52 FLU 0.85 474 NP44-52 166 2103 12 InfluenzaA NP CTELKLSDY effector T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*01:01 B2M MHCI -7346 chip0423_794943 13.99 9.28 Chip2 T1D_4 T1D TGTGCCAGCAGCTTAGCGGTCGGAGAAGGGCCCCAGCATTTT CASSLAVGEGPQHF TRBV7-9*01 TRBJ1-5*01 19.0 853.0 _CASSLAVGEGPQHF 113 4120 BZLF1-190-197 EBV 0.72 2156 BZLF1-190-197 208 3912 12 EBV BZLF1 RAKFKQLL effector T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-B*08:01 B2M MHCI -7347 chip0423_102108 7.0 10.89 Chip2 T1D_5 T1D TGTGCCAGCAGCTGGCTCGGGGCTCGGTATAATTCACCCCTCCACTTT CASSWLGARYNSPLHF TRAV20*01 TRAJ11*01 3.0 8.0 TGTGCCAGCAGCTGGCTCGGGGATCGGTATAATTCACCCCTCCACTTT CASSWLGDRYNSPLHF TRBV7-9*01 TRBJ1-6*01 108.0 4240.0 CASSWLGARYNSPLHF_CASSWLGDRYNSPLHF 2 5939 BZLF1-190-197 EBV 0.57 2156 NEG 175 5764 7 EBV BZLF1 RAKFKQLL transitional T cells between effector and memory populations PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-B*08:01 B2M MHCI -7348 chip0423_563815 12.77 10.9 Chip2 T1D_5 T1D TGTGCAGCAATGGAAACCTCCTACGACAAGGTGATATTT CAAMETSYDKVIF TRAV13-1*01 TRAJ50*01 24.0 2183.0 CAAMETSYDKVIF_ 7 4793 BZLF1-190-197 EBV 0.71 2156 NEG 168 4625 9 EBV BZLF1 RAKFKQLL effector memory T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-B*08:01 B2M MHCI -7349 chip0423_709086 -2.82 8.96 Chip2 T1D_4 T1D TGTGCCCTGTGGGAGGTGTTTCCTGGGGCAAACAACCTCTTCTTT CALWEVFPGANNLFF TRAV14/DV4*01 TRAJ36*01 9.0 161.0 CALWEVFPGANNLFF_ 1 8714 ROTA-VP3 ROTA 0.4 41 NEG 158 8556 2 RotavirusA VP3 YLLPGWKL Naive T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*02:01 B2M MHCI -7350 chip0423_62664 14.49 9.92 Chip2 T1D_4 T1D TGCATCGTCAGAGAGGGCGGCGGTGCTGCCGGCCTCCCCTTT CIVREGGGAAGLPF TRAV26-1*01 TRAJ45*01 33.0 1620.0 TGTGCCAGCAGCTTAGCGGTCGGAGAAGGGCCCCAGCATTTT CASSLAVGEGPQHF TRBV7-9*01 TRBJ1-5*01 26.0 822.0 CIVREGGGAAGLPF_CASSLAVGEGPQHF 4 3266 BZLF1-190-197 EBV 0.9 2156 BZLF1-190-197 177 3089 12 EBV BZLF1 RAKFKQLL effector T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-B*08:01 B2M MHCI -7351 chip0423_343368 15.55 11.04 Chip2 T1D_5 T1D TGTGCAGCAAAAGAAACCTCCTACGACAAGGTGATATTT CAAKETSYDKVIF TRAV13-1*01 TRAJ50*01 47.0 2913.0 TGTGCCAGCAGCTTATTAGGACGATCGAACACTGAAGCTTTCTTT CASSLLGRSNTEAFF TRBV7-9*01 TRBJ1-1*01 15.0 434.0 CAAKETSYDKVIF_CASSLLGRSNTEAFF 13 2414 BZLF1-190-197 EBV 0.86 2156 NEG 142 2272 12 EBV BZLF1 RAKFKQLL effector T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-B*08:01 B2M MHCI -7352 chip0423_349049 9.59 9.5 Chip2 T1D_4 T1D TGCATCGTCAGAGAGGGAGGAGGTGCTGACGGACTCCCCTTT CIVREGGGADGLPF TRAV26-1*01 TRAJ45*01 84.0 5053.0 TGTGCCAGCAGCTTGGCGGTCGGGGAAGGGCCCCAGCATTTT CASSLAVGEGPQHF TRBV7-9*01 TRBJ1-5*01 2.0 14.0 CIVREGGGADGLPF_CASSLAVGEGPQHF 21 5009 BZLF1-190-197 EBV 0.71 2156 BZLF1-190-197 175 4834 8 EBV BZLF1 RAKFKQLL effector memory T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-B*08:01 B2M MHCI -7353 chip0423_219145 14.1 10.66 Chip2 T1D_5 T1D TGTGCAGCGGCGGAAACCTCCTACGACAAGGTGATATTT CAAAETSYDKVIF TRAV13-1*01 TRAJ50*01 15.0 2017.0 TGTGCCAGCCAACTAGCGGGAGGCACCGGGGAGCTGTTTTTT CASQLAGGTGELFF TRBV24-1*01 TRBJ2-2*01 18.0 1117.0 CAAAETSYDKVIF_CASQLAGGTGELFF 131 4916 BZLF1-190-197 EBV 0.83 2156 NEG 158 4758 12 EBV BZLF1 RAKFKQLL effector T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-B*08:01 B2M MHCI -7354 chip0423_155041 7.03 12.43 Chip2 T1D_4 T1D TGTGCCGTGACTAGCTATGGAAAGCTGACATTT CAVTSYGKLTF TRAV12-2*01 TRAJ52*01 17.0 2084.0 TGCATCGTCAGACCCACTCTAGCAACACAGGCAAACTAATCTTT CIVRPTLg?cNTGKLIF TRAV26-1*01 TRAJ37*01 38.0 2033.0 0.62 TGCAGCGTTGAGGGGGGAGGGGTAGCGGCAAGCCTTGACAATGAGCAGTTCTTC CSVEGGGVAASLDNEQFF TRBV29-1*01 TRBJ2-1*01 3.0 34.0 CAVTSYGKLTF_CSVEGGGVAASLDNEQFF 1 4968 PGT-178 PGT 0.81 1480 PGT-178 170 4798 7 HomoSapiens PGT LLAGIGTVPI transitional T cells between effector and memory populations PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*02:01 B2M MHCI -7355 chip0423_82169 -3.13 12.04 Chip2 T1D_5 T1D TGTGCTGTGGAAATGACAACTGACAGCTGGGGGAAATTGCAGTTT CAVEMTTDSWGKLQF TRAV21*01 TRAJ24*01 27.0 1174.0 CAVEMTTDSWGKLQF_ 1 4615 BZLF1-190-197 EBV 0.47 2156 NEG 151 4464 1 EBV BZLF1 RAKFKQLL Naive T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-B*08:01 B2M MHCI -7356 chip0423_595315 0.06 6.33 Chip2 healthy_3 healthy TGTGCTCTGAGTGAGGCAAAGGAGGCGGTGCTGCCGGACTCCCCTTT CALSEAKga?GGAAGLPF TRAV19*01 TRAJ45*01 85.0 3610.0 TGTGCCAGCAGTTTATCCGGAAAAGCTTTCTTT CASSLSGKAFF TRBV28*01 TRBJ1-1*01 3.0 122.0 CALSEAKga?GGAAGLPF_CASSLSGKAFF 1 11181 PREINS-2-10 INS 0.55 37 NEG 136 11045 3 HomoSapiens PREINS ALWMRLLPL Naive T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*02:01 B2M MHCI -7357 chip0423_581399 5.42 10.84 Chip2 T1D_6 T1D TGCATCCTCCCACTTGCTGGTGGTACTAGCTATGGAAAGCTGACATTT CILPLAGGTSYGKLTF TRAV26-2*01 TRAJ52*01 6.0 232.0 TGTGCCAGCAGCTTGGGACAGGCCTACGAGCAGTACTTC CASSLGQAYEQYF TRBV7-8*01 TRBJ2-7*01 12.0 580.0 CILPLAGGTSYGKLTF_CASSLGQAYEQYF 308 5964 EBNA3A-193-201 EBV 0.62 1022 NEG 183 5781 6 EBV EBNA3A FLRGRAYGL central memory T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-B*08:01 B2M MHCI -7358 chip0423_666590 9.66 10.28 Chip2 T1D_5 T1D TGTGCAGAGATGGAAACCTCCTACGACAAGGTGATATTT CAEMETSYDKVIF TRAV13-2*01 TRAJ50*01 16.0 1240.0 TGTGCCAGCAGCTCCTTAAGCGGGGGGGCAAGAAATGAACAGTTCTTC CASSSLSGGARNEQFF TRBV7-9*01 TRBJ2-1*01 5.0 188.0 CAEMETSYDKVIF_CASSSLSGGARNEQFF 1 4523 BZLF1-190-197 EBV 0.77 2156 BZLF1-190-197 191 4332 9 EBV BZLF1 RAKFKQLL effector memory T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-B*08:01 B2M MHCI -7359 chip0423_767620 12.51 7.41 Chip2 T1D_4 T1D TGCATCCTGCCTCTTGCTGGTGGTACTAGCTATGGAAAGCTGACATTT CILPLAGGTSYGKLTF TRAV26-2*01 TRAJ52*01 30.0 1627.0 TGTGCCAGCAGCTTAGGGCAAGCCTACGAGCAGTACTTC CASSLGQAYEQYF TRBV7-8*01 TRBJ2-7*01 4.0 265.0 CILPLAGGTSYGKLTF_CASSLGQAYEQYF 308 4574 EBNA3A-193-201 EBV 0.69 1022 NEG 172 4402 10 EBV EBNA3A FLRGRAYGL effector memory T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-B*08:01 B2M MHCI -7360 chip0423_175279 14.87 9.41 Chip2 healthy_4 healthy TGTGCTGTGGAGGATCAAGGGAGATCTTATAACACCGACAAGCTCATCTTT CAVEDQGRSYNTDKLIF TRAV2*01 TRAJ34*01 55.0 831.0 TGTGCCAGCAGTTTCAGCGGAGAGACCCAGTACTTC CASSFSGETQYF TRBV28*01 TRBJ2-5*01 1.0 83.0 CAVEDQGRSYNTDKLIF_CASSFSGETQYF 1 4267 BZLF1-190-197 EBV 0.78 2156 NEG 159 4108 12 EBV BZLF1 RAKFKQLL effector T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-B*08:01 B2M MHCI -7361 chip0423_158147 13.19 7.65 Chip2 T1D_4 T1D TGCATCCTGCCATTGGAGGGTGGTACTAGCTATGGAAAGCTGACATTT CILPLEGGTSYGKLTF TRAV26-2*01 TRAJ52*01 79.0 2081.0 TGTGCCAGCAGCTCGGGACAAGCCTACGAGCAGTACTTC CASSSGQAYEQYF TRBV7-8*01 TRBJ2-7*01 33.0 1560.0 CILPLEGGTSYGKLTF_CASSSGQAYEQYF 2 3016 EBNA3A-193-201 EBV 0.62 1022 NEG 168 2848 10 EBV EBNA3A FLRGRAYGL effector memory T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-B*08:01 B2M MHCI -7362 chip0423_19843 9.51 11.26 Chip2 T1D_4 T1D TGTGCCAGCAGTCCGCTCACAGATACGCAGTATTTT CASSPLTDTQYF TRBV27*01 TRBJ2-3*01 25.0 1879.0 _CASSPLTDTQYF 2 4838 BZLF1-190-197 EBV 0.67 2156 NEG 174 4664 9 EBV BZLF1 RAKFKQLL effector memory T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-B*08:01 B2M MHCI -7363 chip0423_235831 14.17 10.38 Chip2 T1D_5 T1D TGTGCCAGCAGCTTATTAGGACGATCGAACACTGAAGCTTTCTTT CASSLLGRSNTEAFF TRBV7-9*01 TRBJ1-1*01 40.0 1043.0 _CASSLLGRSNTEAFF 8 3372 BZLF1-190-197 EBV 0.61 2156 NEG 180 3192 12 EBV BZLF1 RAKFKQLL effector T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-B*08:01 B2M MHCI -7364 chip0423_762643 -2.74 8.07 Chip2 T1D_5 T1D TGCGCCAGCAGCCAAGGACCCACGGGCGAGCAGTACTTC CASSQGPTGEQYF TRBV4-1*01 TRBJ2-7*01 9.0 480.0 _CASSQGPTGEQYF 1 7236 ZNT8-YAK-9 ZNT8 0.62 59 NEG 153 7083 2 HomoSapiens ZNT8 YAKWKLCSA Naive T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-B*08:01 B2M MHCI -7365 chip0423_602780 15.09 9.0 Chip2 T1D_6 T1D TGTGCCAGCAGCGTTAGCGGGGCCCCCTACGAGCAGTACTTC CASSVSGAPYEQYF TRBV9*01 TRBJ2-7*01 51.0 3491.0 _CASSVSGAPYEQYF 21 3441 EBNA3A-193-201 EBV 0.75 1022 NEG 173 3268 12 EBV EBNA3A FLRGRAYGL effector T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-B*08:01 B2M MHCI -7366 chip0423_267480 11.29 10.36 Chip2 T1D_4 T1D TGTGCTCTCGTGAATTATGGAGGAAGCCAAGGAAATCTCATCTTT CALVNYGGSQGNLIF TRAV19*01 TRAJ42*01 108.0 3979.0 TGTGCCGTCTGGAGGGACGGAGCCTACGAGCAGTACTTC CAVWRDGAYEQYF TRBV28*01 TRBJ2-7*01 46.0 3425.0 CALVNYGGSQGNLIF_CAVWRDGAYEQYF 13 4374 EBV-LMP1-1 EBV 0.5 237 NEG 206 4168 9 EBV LMP1 YLLEMLWRL effector memory T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*02:01 B2M MHCI -7367 chip0423_822128 7.43 9.82 Chip2 T1D_6 T1D TGCGCCAGCAGTGACATTAGGGAGGGGCAGGGTGAAGCTTTCTTT CASSDIREGQGEAFF TRBV10-2*01 TRBJ1-1*01 42.0 1555.0 _CASSDIREGQGEAFF 37 10609 EBNA3A-158-166 EBV 0.83 444 NEG 191 10418 8 EBV EBNA3A QAKWRLQTL effector memory T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-B*08:01 B2M MHCI -7368 chip0423_148084 11.24 7.33 Chip2 T1D_6 T1D TGCATCCTCCCACTTGCTGGTGGTACTAGCTATGGAAAGCTGACATTT CILPLAGGTSYGKLTF TRAV26-2*01 TRAJ52*01 67.0 3057.0 TGTGCCAGCAGCTTGGGACAGGCCTACGAGCAGTACTTC CASSLGQAYEQYF TRBV7-8*01 TRBJ2-7*01 4.0 277.0 CILPLAGGTSYGKLTF_CASSLGQAYEQYF 308 6820 EBNA3A-193-201 EBV 0.85 1022 EBNA3A-193-201 228 6592 10 EBV EBNA3A FLRGRAYGL effector memory T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-B*08:01 B2M MHCI -7369 chip0423_679817 8.95 7.87 Chip2 T1D_5 T1D TGTGCCAGCAGTTTCAGTGGGAGTGCCAACACTGAAGCTTTCTTT CASSFSGSANTEAFF TRAV9-1*01,TRAV8-1*01 TRAJ40*01 2.0 7.0 TGTGCCAGCAGTTTCAGTGGGAGTGCCAACACTGAAGCTTTCTTT CASSFSGSANTEAFF TRBV12-3*01,TRBV12-4*01 TRBJ1-1*01 55.0 2316.0 CASSFSGSANTEAFF_CASSFSGSANTEAFF 1 6294 BZLF1-190-197 EBV 0.4 2156 NEG 176 6118 8 EBV BZLF1 RAKFKQLL effector memory T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-B*08:01 B2M MHCI -7370 chip0423_267892 7.11 12.46 Chip2 T1D_6 T1D TGTGCCTCCCAAGGAGGAAGCCAAGGAAATCTCATCTTT CASQGGSQGNLIF TRAV20*01 TRAJ42*01 18.0 1096.0 TGTGCCAGCAGCTTAGGAGGACAGACAGAGACCCAGTACTTC CASSLGGQTETQYF TRBV13*01 TRBJ2-5*01 14.0 1250.0 CASQGGSQGNLIF_CASSLGGQTETQYF 13 6780 ROTA-VP6 ROTA 0.73 47 ROTA-VP6 168 6612 7 RotavirusA VP6 TLLANVTAV transitional T cells between effector and memory populations PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*02:01 B2M MHCI -7371 chip0423_65414 11.28 11.87 Chip2 T1D_5 T1D _ 6746 2916 BZLF1-190-197 EBV 0.44 2156 NEG 183 2733 9 EBV BZLF1 RAKFKQLL effector memory T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-B*08:01 B2M MHCI -7372 chip0423_840814 9.71 10.82 Chip2 T1D_5 T1D TGTGCAGCGGCGGAAACCTCCTACGACAAGGTGATATTT CAAAETSYDKVIF TRAV13-1*01 TRAJ50*01 28.0 2041.0 TGTGCCAGCCAACTAGCGGGAGGCACCGGGGAGCTGTTTTTT CASQLAGGTGELFF TRBV24-1*01 TRBJ2-2*01 26.0 1760.0 CAAAETSYDKVIF_CASQLAGGTGELFF 131 4967 BZLF1-190-197 EBV 0.67 2156 NEG 165 4802 9 EBV BZLF1 RAKFKQLL effector memory T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-B*08:01 B2M MHCI -7373 chip0423_264796 15.0 8.89 Chip2 healthy_3 healthy _ 6746 2689 GAD65-114-122 GAD65 0.5 63 NEG 162 2527 12 HomoSapiens GAD65 VMNILLQYV effector T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*02:01 B2M MHCI -7374 chip0423_49131 13.24 10.81 Chip2 T1D_4 T1D TGTGCCAGCAGCTTAGCGGTCGGAGAAGGGCCCCAGCATTTT CASSLAVGEGPQHF TRBV7-9*01 TRBJ1-5*01 56.0 2312.0 _CASSLAVGEGPQHF 113 3923 BZLF1-190-197 EBV 0.94 2156 BZLF1-190-197 189 3734 9 EBV BZLF1 RAKFKQLL effector memory T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-B*08:01 B2M MHCI -7375 chip0423_717860 5.39 11.01 Chip2 healthy_3 healthy TGTGCCAGCAGCGTTCAGGGGACCACTGAAGCTTTCTTT CASSVQGTTEAFF TRBV9*01 TRBJ1-1*01 33.0 1344.0 _CASSVQGTTEAFF 1 5189 ZNT8-PTE-9 ZNT8 1.0 18 ZNT8-PTE-9 142 5047 6 HomoSapiens ZNT8 PTEKGANEY central memory T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*01:01 B2M MHCI -7376 chip0423_70657 9.03 9.2 Chip2 T1D_4 T1D TGTGCCAGCAGCTTAGCGGTCGGAGAAGGGCCCCAGCATTTT CASSLAVGEGPQHF TRBV7-9*01 TRBJ1-5*01 1.0 30.0 _CASSLAVGEGPQHF 113 4118 BZLF1-190-197 EBV 0.83 2156 BZLF1-190-197 186 3932 8 EBV BZLF1 RAKFKQLL effector memory T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-B*08:01 B2M MHCI -7377 chip0423_48329 15.01 12.72 Chip2 T1D_5 T1D TGTGCAATGAGGGCCATTGAGGGGGCAAACAACCTCTTCTTT CAMRAIEGANNLFF TRAV14/DV4*01 TRAJ36*01 19.0 927.0 CAMRAIEGANNLFF_ 17 2348 BZLF1-190-197 EBV 0.76 2156 BZLF1-190-197 184 2164 12 EBV BZLF1 RAKFKQLL effector T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-B*08:01 B2M MHCI -7378 chip0423_294387 -3.37 11.05 Chip2 T1D_5 T1D TGTGCCGTCTATAACACCGACAAGCTCATCTTT CAVYNTDKLIF TRAV12-2*01 TRAJ34*01 1.0 33.0 TGCGCCAGCAGCCAAGTCGGGAACTATGGCTACACCTTC CASSQVGNYGYTF TRBV6-1*01 TRBJ1-2*01 11.0 500.0 CAVYNTDKLIF_CASSQVGNYGYTF 1 4977 INS-GSH-9 INS 0.68 19 NEG 152 4825 1 HomoSapiens INS GSHLVEALY Naive T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*01:01 B2M MHCI -7379 chip0423_261594 11.87 10.01 Chip2 T1D_6 T1D TCCATCCTCCCACTTGCTGTGGTTGCTTGCTATGGCTAGCTGACATTT SILPLAVVACYG*LTF TRAV26-2*01 TRAJ52*01 7.0 337.0 TGTGCCAGCAGCTTGGGACAGGCCTACGAGCAGTACTTC CASSLGQAYEQYF TRBV7-8*01 TRBJ2-7*01 16.0 766.0 SILPLAVVACYG*LTF_CASSLGQAYEQYF 1 5344 EBNA3A-193-201 EBV 0.88 1022 NEG 187 5157 9 EBV EBNA3A FLRGRAYGL effector memory T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-B*08:01 B2M MHCI -7380 chip0423_32452 -3.0 9.68 Chip2 T1D_6 T1D TGTGCCAGCAGTTACGGTCAGCCCCAGCATTTT CASSYGQPQHF TRBV6-2*01,TRBV6-3*01,TRBV6-1*01 TRBJ1-5*01 12.0 382.0 _CASSYGQPQHF 1 6031 IAPP-5-13 IAPP 0.54 30 NEG 170 5861 2 HomoSapiens IAPP KLQVFLIVL Naive T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*02:01 B2M MHCI -7381 chip0423_629827 14.83 9.24 Chip2 T1D_4 T1D TGTGCCAGCAGCTTAGCGGTCGGAGAAGGGCCCCAGCATTTT CASSLAVGEGPQHF TRBV7-9*01 TRBJ1-5*01 99.0 3911.0 _CASSLAVGEGPQHF 113 3359 BZLF1-190-197 EBV 0.69 2156 BZLF1-190-197 184 3175 12 EBV BZLF1 RAKFKQLL effector T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-B*08:01 B2M MHCI -7382 chip0423_237435 14.57 12.07 Chip2 T1D_6 T1D TGCGCCAGCAGTCTCCATCCCTGGGGCTGCCTACAATGAGCAGTTCTTC CASSLHPW??gAAYNEQFF TRBV4-3*01 TRBJ2-1*01 37.0 3267.0 _CASSLHPW??gAAYNEQFF 16 3072 EBNA3A-193-201 EBV 0.57 1022 NEG 172 2900 12 EBV EBNA3A FLRGRAYGL effector T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-B*08:01 B2M MHCI -7383 chip0423_200068 11.91 10.73 Chip2 T1D_5 T1D TGTGCAGCGGCGGAAACCTCCTACGACAAGGTGACATTT CAAAETSYDKVTF TRAV13-1*01 TRAJ50*01 34.0 2725.0 TGTGCCAGCCAACTAGCGGAAGGCACCGGGGAGCTGTTTTTT CASQLAEGTGELFF TRBV24-1*01 TRBJ2-2*01 11.0 544.0 CAAAETSYDKVTF_CASQLAEGTGELFF 1 2539 BZLF1-190-197 EBV 1.0 2156 NEG 141 2398 9 EBV BZLF1 RAKFKQLL effector memory T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-B*08:01 B2M MHCI -7384 chip0423_24378 11.77 8.52 Chip2 T1D_4 T1D TGTGCTGTGAGTGATGGGGAAGGAGCCCAGCAGCTGGTATTT CAVSDGEGAQQLVF TRAV8-6*01 TRAJ54*01 34.0 1295.0 TGTGCCAGCAGCTTAACGGTTCTGGCAGGTCCAAACACTGAAGCTTTCTTT CASSLTVLAGPNTEAFF TRBV7-3*01 TRBJ1-1*01 2.0 53.0 CAVSDGEGAQQLVF_CASSLTVLAGPNTEAFF 3 3514 BZLF1-190-197 EBV 0.93 2156 BZLF1-190-197 188 3326 10 EBV BZLF1 RAKFKQLL effector memory T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-B*08:01 B2M MHCI -7385 chip0423_864386 6.53 10.32 Chip2 T1D_6 T1D TGTGCAATGAGAGCGACAGTTGGTGGTGCTAGCTATGGTCCGCTGTCCTTT CAMRATVGGASYGPLSF TRAV14/DV4*01 TRAJ52*01 6.0 104.0 TGCGCCAGCAGTGACATTAGGGAGGGGCAGGGTGAAGCTTTCTTT CASSDIREGQGEAFF TRBV10-2*01 TRBJ1-1*01 27.0 699.0 CAMRATVGGASYGPLSF_CASSDIREGQGEAFF 1 7278 EBNA3A-158-166 EBV 0.78 444 NEG 178 7100 6 EBV EBNA3A QAKWRLQTL central memory T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-B*08:01 B2M MHCI -7386 chip0423_725024 11.22 9.74 Chip2 T1D_4 T1D TGTGCTGTGACGTCCCTTTACTCTGGGGCTGGGAGTTACCAACTCACTTTC CAVTSLYSGAGSYQLTF TRAV3*01 TRAJ28*01 90.0 3580.0 TGTGCCAGCAGTTTAACGGGGCCCATACCCAGCACAGATACGCAGTATTTT CASSLTGPIPSTDTQYF TRBV27*01 TRBJ2-3*01 24.0 943.0 CAVTSLYSGAGSYQLTF_CASSLTGPIPSTDTQYF 2 4955 EBNA3A-158-166 EBV 0.79 444 NEG 202 4753 9 EBV EBNA3A QAKWRLQTL effector memory T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-B*08:01 B2M MHCI -7387 chip0423_710454 -3.35 9.08 Chip2 T1D_5 T1D _ 6746 8170 EBNA3A-158-166 EBV 0.41 444 EBNA3A-158-166 163 8007 2 EBV EBNA3A QAKWRLQTL Naive T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-B*08:01 B2M MHCI -7388 chip0423_220909 7.9 13.55 Chip2 T1D_5 T1D TGTGCTGTGGAAGGCAGCAACTATCAGTTAATCTGG CAVEGSNYQLIW TRAV21*01 TRAJ33*01 43.0 3783.0 TGTGCCAGCAGCCAGGGGTACAATGAGCAGTTCTTC CASSQGYNEQFF TRBV7-9*01 TRBJ2-1*01 4.0 481.0 CAVEGSNYQLIW_CASSQGYNEQFF 1 2641 NP140-148 FLU 0.62 102 NEG 168 2473 7 InfluenzaA NP HSNLNDATY transitional T cells between effector and memory populations PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*01:01 B2M MHCI -7389 chip0423_812072 11.81 9.46 Chip2 T1D_6 T1D TGCATCCTCCCTCTTGCTGGTGGTACTTGCTGTTGGTCGCTGCCACTT CILPLAGGTCCWSLPL TRAV26-2*01 TRAJ52*01 31.0 1373.0 TGTGCCAGCAGCTTGGGACAGGCCTACGAGCAGTACTTC CASSLGQAYEQYF TRBV7-8*01 TRBJ2-7*01 16.0 1035.0 CILPLAGGTCCWSLPL_CASSLGQAYEQYF 1 3843 EBNA3A-193-201 EBV 0.82 1022 NEG 193 3650 10 EBV EBNA3A FLRGRAYGL effector memory T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-B*08:01 B2M MHCI -7390 chip0423_424170 5.5 10.47 Chip2 T1D_4 T1D TGCAGTGCCTCTCGTGACTCCTACGAGCAGTACTTC CSASRDSYEQYF TRBV20-1*01 TRBJ2-7*01 46.0 3894.0 _CSASRDSYEQYF 7 5109 EBV-LMP1-1 EBV 0.9 237 NEG 180 4929 6 EBV LMP1 YLLEMLWRL central memory T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*02:01 B2M MHCI -7391 chip0423_820065 14.3 11.23 Chip2 T1D_5 T1D TGTGCAATGAGAGAGAGTTATAACCAGGGAGGAAAGCTTATCTTC CAMRESYNQGGKLIF TRAV14/DV4*01 TRAJ23*01 166.0 6139.0 TGTGCCAGTACTTGGGGGGGGCTGGGCACTGAAGCTTTCTTT CASTWGGLGTEAFF TRBV19*01 TRBJ1-1*01 17.0 448.0 CAMRESYNQGGKLIF_CASTWGGLGTEAFF 1 2550 BZLF1-190-197 EBV 0.9 2156 NEG 216 2334 12 EBV BZLF1 RAKFKQLL effector T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-B*08:01 B2M MHCI -7392 chip0423_223549 4.75 10.13 Chip2 T1D_6 T1D TGTGCTGCAGGTGCCGGCGGTCACGGGCGGCGGCACCAAACTCCCCTTT CAAGAGGH??gGGGTKLPF TRAV8-3*01 TRAJ10*01 47.0 1931.0 TGTGCCAGCAGACTTGTCCCTAGCTACGAGCAGTACTTC CASRLVPSYEQYF TRBV6-2*01,TRBV6-3*01 TRBJ2-7*01 15.0 1326.0 CAAGAGGH??gGGGTKLPF_CASRLVPSYEQYF 1 4438 ZNT8-YAY-8 ZNT8 1.0 54 ZNT8-YAY-8 168 4270 6 HomoSapiens ZNT8 YAYAKWKL central memory T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-B*08:01 B2M MHCI -7393 chip0423_256159 9.42 8.36 Chip2 T1D_6 T1D TGCGCCAGCAGTGACATTAGGGAGGGGCAGGGTGAAGCTTTCTTT CASSDIREGQGEAFF TRBV10-2*01 TRBJ1-1*01 29.0 581.0 _CASSDIREGQGEAFF 37 7770 EBNA3A-158-166 EBV 0.67 444 NEG 161 7609 8 EBV EBNA3A QAKWRLQTL effector memory T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-B*08:01 B2M MHCI -7394 chip0423_722755 4.94 11.83 Chip2 T1D_5 T1D TGTGCAGCATCGGAAACCTCCTACGACAAGGTGATATTT CAASETSYDKVIF TRAV13-1*01 TRAJ50*01 8.0 679.0 TGTGCCAGCAGCCCCTTGGGGGACAGCGCCTACGAGCAGTACTTC CASSPLGDSAYEQYF TRBV7-9*01 TRBJ2-7*01 7.0 434.0 CAASETSYDKVIF_CASSPLGDSAYEQYF 4 2968 BZLF1-190-197 EBV 0.57 2156 NEG 152 2816 6 EBV BZLF1 RAKFKQLL central memory T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-B*08:01 B2M MHCI -7395 chip0423_576119 -3.16 8.63 Chip2 T1D_6 T1D _ 6746 8676 IAPP-5-13 IAPP 0.45 30 NEG 150 8526 2 HomoSapiens IAPP KLQVFLIVL Naive T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*02:01 B2M MHCI -7396 chip0423_508365 15.05 11.32 Chip2 T1D_5 T1D TGTGCAGCGGCGGAAACCTCCTACGACAAGGTGATATTT CAAAETSYDKVIF TRAV13-1*01 TRAJ50*01 16.0 899.0 TGTGCCAGCCAACTAGCGGGAGGCACCGGGGAGCTGTTTTTT CASQLAGGTGELFF TRBV24-1*01 TRBJ2-2*01 13.0 705.0 CAAAETSYDKVIF_CASQLAGGTGELFF 131 2109 BZLF1-190-197 EBV 0.64 2156 NEG 171 1938 12 EBV BZLF1 RAKFKQLL effector T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-B*08:01 B2M MHCI -7397 chip0423_712541 8.9 7.81 Chip2 T1D_5 T1D TGTGCAGCAACGGAAACCTCCTACGACAAGGTGATATTT CAATETSYDKVIF TRAV13-1*01 TRAJ50*01 25.0 1996.0 TGTGCCAGCAGCCGCCTGGGGACGGAAGAGACCCAGTACTTC CASSRLGTEETQYF TRBV7-9*01 TRBJ2-5*01 96.0 6210.0 CAATETSYDKVIF_CASSRLGTEETQYF 2 6134 BZLF1-190-197 EBV 0.59 2156 BZLF1-190-197 169 5965 8 EBV BZLF1 RAKFKQLL effector memory T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-B*08:01 B2M MHCI -7398 chip0423_110590 6.57 13.41 Chip2 T1D_6 T1D TGTGCCAGCAGCTTAGCGGGTCGTGAGGGTACGCAGTATTTT CASSLAGREGTQYF TRBV11-3*01 TRBJ2-3*01 17.0 823.0 _CASSLAGREGTQYF 13 4901 NP380-388 FLU 0.78 60 NP380-388 165 4736 7 InfluenzaA NP ELRSRYWAI transitional T cells between effector and memory populations PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-B*08:01 B2M MHCI -7399 chip0423_14617 -2.21 9.46 Chip2 T1D_5 T1D TGTGCAGCAAGACCGAGGCCCGGAAAGCTCATCTTT CAARPRPGKLIF TRAV13-1*01 TRAJ34*01 29.0 2625.0 TGTGCCAGCAGCCCGGGGACAGGGAACACTGAAGCTTTCTTT CASSPGTGNTEAFF TRBV3-1*01 TRBJ1-1*01 53.0 2868.0 CAARPRPGKLIF_CASSPGTGNTEAFF 1 5559 GAD2-EVK-9 GAD65 0.53 2 NEG 166 5393 3 HomoSapiens GAD2 EVKEKGMAA Naive T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-B*08:01 B2M MHCI -7400 chip0423_823099 11.47 10.52 Chip2 T1D_6 T1D TGCAGCGCCGGCAGGGACGGGACTAATGAAAAACTGTTTTTT CSAGRDGTNEKLFF TRBV29-1*01 TRBJ1-4*01 114.0 5190.0 _CSAGRDGTNEKLFF 159 5439 EBV-BLMF1 EBV 0.5 2531 NEG 188 5251 9 EBV BLMF1 GLCTLVAML effector memory T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*02:01 B2M MHCI -7401 chip0423_699814 12.5 8.25 Chip2 T1D_6 T1D TGCATCCTCCCACTTGCTGGTGGTCCTGGCTATGGAAAGCTGACATTT CILPLAGGPGYGKLTF TRAV26-2*01 TRAJ52*01 12.0 630.0 TGTGCCAGCAGCTTGGGACAGGCCTACGAGCAGTACTTC CASSLGQAYEQYF TRBV7-8*01 TRBJ2-7*01 15.0 973.0 CILPLAGGPGYGKLTF_CASSLGQAYEQYF 2 3417 EBNA3A-193-201 EBV 0.43 1022 NEG 223 3194 10 EBV EBNA3A FLRGRAYGL effector memory T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-B*08:01 B2M MHCI -7402 chip0423_863075 12.96 7.29 Chip2 T1D_4 T1D TGCATCCTCCCGTTGGCTGGTGGTACTAGCTATAAAAAGCTGACATTT CILPLAGGTSYKKLTF TRAV26-2*01 TRAJ52*01 27.0 912.0 TGTGCCAGCAGCCAAGGACAGGCCTACGAGCAGTACTTC CASSQGQAYEQYF TRBV7-8*01 TRBJ2-7*01 66.0 3173.0 CILPLAGGTSYKKLTF_CASSQGQAYEQYF 1 3774 EBNA3A-193-201 EBV 0.73 1022 NEG 208 3566 10 EBV EBNA3A FLRGRAYGL effector memory T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-B*08:01 B2M MHCI -7403 chip0423_455602 10.68 8.78 Chip2 T1D_5 T1D TGTGCCAGCAGCTCCTTAAGCGGGGGGGCAGGAAATGAGCAGTTCTTC CASSSLSGGAGNEQFF TRBV7-9*01 TRBJ2-1*01 49.0 2161.0 _CASSSLSGGAGNEQFF 33 4623 BZLF1-190-197 EBV 1.0 2156 NEG 178 4445 10 EBV BZLF1 RAKFKQLL effector memory T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-B*08:01 B2M MHCI -7404 chip0423_412881 16.25 11.25 Chip2 healthy_4 healthy TGTGCCCGCAGCTCCGGCCCGGCCTACGCGCAGTACGTC CARSSGPAYAQYV TRBV7-8*01 TRBJ2-7*01 4.0 596.0 _CARSSGPAYAQYV 1 2958 EBNA3A-193-201 EBV 0.81 1022 NEG 176 2782 12 EBV EBNA3A FLRGRAYGL effector T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-B*08:01 B2M MHCI -7405 chip0423_230397 -0.63 8.3 Chip2 T1D_6 T1D TGTGCTCTGAGTGAGCCTAATTATGGGGGAAGCCAAGGTAGTCTCCTCTTT CALSEPNYGGSQGSLLF TRAV19*01 TRAJ42*01 12.0 494.0 TGTGCCAGTAGTATTCAGGGAACCACCAATGAGCAGTTCTTC CASSIQGTTNEQFF TRBV19*01 TRBJ2-1*01 41.0 2334.0 CALSEPNYGGSQGSLLF_CASSIQGTTNEQFF 1 9184 ZNT8-186-194 ZNT8 0.74 22 NEG 179 9005 4 HomoSapiens ZNT8 VAANIVLTV Naive T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*02:01 B2M MHCI -7406 chip0423_12818 12.07 7.89 Chip2 T1D_4 T1D TGTGCCAGCAGCCAAGTCAACAACCCGGGGGATGGCTACACCTTC CASSQVNNPGDGYTF TRBV14*01 TRBJ1-2*01 5.0 145.0 _CASSQVNNPGDGYTF 94 4093 EBNA3A-158-166 EBV 0.8 444 NEG 206 3887 10 EBV EBNA3A QAKWRLQTL effector memory T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-B*08:01 B2M MHCI -7407 chip0423_665752 12.54 10.58 Chip2 T1D_5 T1D TGTGCCAGCAGCTCCTTAAGCGGGGGGGCAGGAAATGAGCAGTTCTTC CASSSLSGGAGNEQFF TRBV7-9*01 TRBJ2-1*01 39.0 2033.0 _CASSSLSGGAGNEQFF 33 4123 BZLF1-190-197 EBV 0.68 2156 NEG 188 3935 9 EBV BZLF1 RAKFKQLL effector memory T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-B*08:01 B2M MHCI -7408 chip0423_671025 10.92 6.87 Chip2 T1D_5 T1D TGTGCAGCCACGGAAACCTCCTACGACAAGGTGATATTT CAATETSYDKVIF TRAV13-1*01 TRAJ50*01 7.0 642.0 TGCAGCGCAGGGGGCAACACTGAAGCTTTCTTT CSAGGNTEAFF TRBV29-1*01 TRBJ1-1*01 216.0 17792.0 CAATETSYDKVIF_CSAGGNTEAFF 2 5885 BZLF1-190-197 EBV 0.69 2156 BZLF1-190-197 223 5662 10 EBV BZLF1 RAKFKQLL effector memory T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-B*08:01 B2M MHCI -7409 chip0423_764112 12.38 6.51 Chip2 T1D_6 T1D TGTGCCAGCAGCTTGGGACAGGCCTACGAGCAGTACTTC CASSLGQAYEQYF TRBV7-8*01 TRBJ2-7*01 48.0 2784.0 _CASSLGQAYEQYF 175 5076 EBNA3A-193-201 EBV 0.92 1022 NEG 173 4903 10 EBV EBNA3A FLRGRAYGL effector memory T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-B*08:01 B2M MHCI -7410 chip0423_412199 6.42 11.4 Chip2 T1D_4 T1D TGTGCTGTGGAGGGGGAACAGGCAGGAACTGCTCTGATCTTT CAVEGEQAGTALIF TRAV2*01 TRAJ15*01 29.0 1114.0 CAVEGEQAGTALIF_ 1 5712 GAD65-476-484 GAD65 0.69 8 NEG 171 5541 7 HomoSapiens GAD65 ELAEYLYNI transitional T cells between effector and memory populations PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*02:01 B2M MHCI -7411 chip0423_878702 9.05 7.65 Chip2 T1D_5 T1D TGTGCAGCAATGGAAACCTCCTACGACAAGGTGATATTT CAAMETSYDKVIF TRAV13-1*01 TRAJ50*01 31.0 2051.0 TGTGCCAGCAGCGTCCAGGGACAGGGGCCGACCACCGGGGAGCTGTTTTTT CASSVQGQGPTTGELFF TRBV9*01 TRBJ2-2*01 19.0 840.0 CAAMETSYDKVIF_CASSVQGQGPTTGELFF 2 6412 BZLF1-190-197 EBV 0.8 2156 NEG 171 6241 8 EBV BZLF1 RAKFKQLL effector memory T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-B*08:01 B2M MHCI -7412 chip0423_586734 12.66 10.98 Chip2 T1D_5 T1D TGTGCCAGCAGCCCGTTGGGCACAGCCGACTCTGGAAACACCATATATTTT CASSPLGTADSGNTIYF TRBV11-1*01 TRBJ1-3*01 7.0 179.0 _CASSPLGTADSGNTIYF 7 3640 BZLF1-190-197 EBV 0.62 2156 NEG 178 3462 9 EBV BZLF1 RAKFKQLL effector memory T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-B*08:01 B2M MHCI -7413 chip0423_530968 -1.91 7.32 Chip2 T1D_6 T1D TGTGCCGTGACCCCGTGGGAAGGTGGCTACAATAAGCTGATTTTT CAVTPWEGGYNKLIF TRAV12-2*01 TRAJ4*01 1.0 48.0 TGTGCCAGCAGTTTATCGGGCGCTGGCGAGCAGTACTTC CASSLSGAGEQYF TRBV27*01 TRBJ2-7*01 1.0 84.0 CAVTPWEGGYNKLIF_CASSLSGAGEQYF 1 8396 GAD65-114-122 GAD65 0.73 63 NEG 173 8223 3 HomoSapiens GAD65 VMNILLQYV Naive T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*02:01 B2M MHCI -7414 chip0423_153397 5.82 11.86 Chip2 T1D_4 T1D TGTGTTATTAGGAAGGCAGGAACTGCTCTGATCTTT CVIRKAGTALIF TRAV12-1*01 TRAJ15*01 40.0 3851.0 CVIRKAGTALIF_ 1 5632 PGT-178 PGT 0.61 1480 NEG 176 5456 7 HomoSapiens PGT LLAGIGTVPI transitional T cells between effector and memory populations PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*02:01 B2M MHCI -7415 chip0423_877914 10.94 11.81 Chip2 T1D_4 T1D TGTGCCAGCAGCTTAACGGTTCTGGCAGGTCCAAACACTGAAGCTTTCTTT CASSLTVLAGPNTEAFF TRBV7-3*01 TRBJ1-1*01 17.0 461.0 _CASSLTVLAGPNTEAFF 32 3435 BZLF1-190-197 EBV 0.83 2156 NEG 180 3255 9 EBV BZLF1 RAKFKQLL effector memory T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-B*08:01 B2M MHCI -7416 chip0423_456513 11.62 7.03 Chip2 T1D_6 T1D TGCGTCCTCCGACTTGGTGGTGCGACTAGCTATGGAAAGCTGACATTA CVLRLGGATSYGKLTL TRAV26-2*01 TRAJ52*01 2.0 57.0 TGTGCCAGCCGCTTGGGCCCGGCCTACGAGCAGTACTTC CASRLGPAYEQYF TRBV7-8*01 TRBJ2-7*01 8.0 360.0 CVLRLGGATSYGKLTL_CASRLGPAYEQYF 1 6284 EBNA3A-193-201 EBV 0.62 1022 NEG 227 6057 10 EBV EBNA3A FLRGRAYGL effector memory T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-B*08:01 B2M MHCI -7417 chip0423_746077 9.67 7.73 Chip2 T1D_4 T1D TGCATCGTCAGAGAGGGAGGAGGTGCTGACGGACTCACCTTT CIVREGGGADGLTF TRAV26-1*01 TRAJ45*01 20.0 1370.0 CIVREGGGADGLTF_ 9 5116 BZLF1-190-197 EBV 0.76 2156 BZLF1-190-197 196 4920 8 EBV BZLF1 RAKFKQLL effector memory T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-B*08:01 B2M MHCI -7418 chip0423_72203 -1.02 8.77 Chip2 T1D_6 T1D TGTGCAATGACCCTACCTAACTTTGGAAATGAGAAATTAACCTTT CAMTLPNFGNEKLTF TRAV12-3*01 TRAJ48*01 44.0 1288.0 TGTGCCAGCAGTATAACCTACCCGACAGGGCTCCAAGAGACCCAGTACTTC CASSITYPTGLQETQYF TRBV27*01 TRBJ2-5*01 85.0 2909.0 CAMTLPNFGNEKLTF_CASSITYPTGLQETQYF 1 7142 PGT-178 PGT 0.72 1480 PGT-178 161 6981 4 HomoSapiens PGT LLAGIGTVPI Naive T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*02:01 B2M MHCI -7419 chip0423_112325 15.42 9.94 Chip2 T1D_4 T1D TGTGCCAGCAGCTTAGCGGTCGGAGAAGGGCCCCAGCATTTT CASSLAVGEGPQHF TRBV7-9*01 TRBJ1-5*01 21.0 902.0 _CASSLAVGEGPQHF 113 4851 BZLF1-190-197 EBV 0.53 2156 BZLF1-190-197 201 4650 12 EBV BZLF1 RAKFKQLL effector T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-B*08:01 B2M MHCI -7420 chip0423_762464 12.15 8.79 Chip2 T1D_4 T1D TGTGCCAGCAGCCAAGTCAACAACCCGGGGGATGGCTACACCTTC CASSQVNNPGDGYTF TRBV14*01 TRBJ1-2*01 4.0 53.0 _CASSQVNNPGDGYTF 94 3116 EBNA3A-158-166 EBV 0.67 444 NEG 189 2927 10 EBV EBNA3A QAKWRLQTL effector memory T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-B*08:01 B2M MHCI -7421 chip0423_532065 -4.22 9.41 Chip2 T1D_6 T1D TGCATCACCTGAGAAATACTGGGGGCTTCCAAACTTTCTTT CIT*EIct?GGFQTFF TRAV26-1*01 TRAJ9*01 1.0 95.0 CIT*EIct?GGFQTFF_ 1 5671 INS-WMR-10 INS 0.81 5 INS-WMR-10 143 5528 2 HomoSapiens INS WMRLLPLLAL Naive T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-B*08:01 B2M MHCI -7422 chip0423_306421 -0.68 7.43 Chip2 healthy_4 healthy _ 6746 7428 PGT-178 PGT 0.59 1480 NEG 172 7256 3 HomoSapiens PGT LLAGIGTVPI Naive T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*02:01 B2M MHCI -7423 chip0423_728459 10.23 10.4 Chip2 healthy_4 healthy TGTGCCAGCAGCCAGACATTTCCGAACACCGGGGAGCTGTTTTTT CASSQTFPNTGELFF TRBV3-1*01 TRBJ2-2*01 9.0 359.0 _CASSQTFPNTGELFF 12 4798 BZLF1-190-197 EBV 0.86 2156 NEG 171 4627 9 EBV BZLF1 RAKFKQLL effector memory T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-B*08:01 B2M MHCI -7424 chip0423_657559 8.69 10.53 Chip2 T1D_5 T1D TGTGCGGGGGGAGAAACCTCCTACGACAAGGTGATATTT CAGGETSYDKVIF TRAV13-1*01 TRAJ50*01 24.0 1899.0 TGTGCCAGCAGCTCACTAGGGACAGGGGACACTGAAGCTTTCTTT CASSSLGTGDTEAFF TRBV7-9*01 TRBJ1-1*01 72.0 2617.0 CAGGETSYDKVIF_CASSSLGTGDTEAFF 11 4530 BZLF1-190-197 EBV 0.93 2156 NEG 191 4339 8 EBV BZLF1 RAKFKQLL effector memory T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-B*08:01 B2M MHCI -7425 chip0423_439908 5.5 8.62 Chip2 T1D_4 T1D TGTGCTACGGACGGGGCTTCCGGATACAGCACCCTCACCTTT CATDGASGYSTLTF TRAV17*01 TRAJ11*01 28.0 1304.0 CATDGASGYSTLTF_ 2 5845 EBV-LMP2-FLY EBV 0.62 355 NEG 169 5676 6 EBV LMP2 FLYALALLL central memory T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*02:01 B2M MHCI -7426 chip0423_414131 -3.75 9.3 Chip2 T1D_6 T1D TGTGCTGTGAGACCTGGAGGCTTCAAAACTATCTTT CAVRPGGFKTIF TRAV20*01 TRAJ9*01 38.0 2689.0 CAVRPGGFKTIF_ 1 5889 gp160-586-593 HIV 0.69 30 gp160-586-593 165 5724 2 HIV-1 gp160 YLKDQQLL Naive T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-B*08:01 B2M MHCI -7427 chip0423_854484 9.7 7.25 Chip2 T1D_5 T1D TGCAGTTTTCCCTGGCCTAGCGGGGTCCCACCCTCCTACGAGCAGTACTTC CSFPWPSGVPPSYEQYF TRBV20-1*01 TRBJ2-7*01 44.0 2096.0 _CSFPWPSGVPPSYEQYF 1 5925 BZLF1-190-197 EBV 0.67 2156 BZLF1-190-197 183 5742 10 EBV BZLF1 RAKFKQLL effector memory T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-B*08:01 B2M MHCI -7428 chip0423_384355 15.03 10.57 Chip2 T1D_6 T1D TGCATCCTCCCACTTGCTGGTGGTACTAGCTATGGAAAGCTGACATTT CILPLAGGTSYGKLTF TRAV26-2*01 TRAJ52*01 57.0 2616.0 TGTGCCAGCAGCTTGGGACAGGCCTACGAGCAGTACTTC CASSLGQAYEQYF TRBV7-8*01 TRBJ2-7*01 34.0 1872.0 CILPLAGGTSYGKLTF_CASSLGQAYEQYF 308 3892 EBNA3A-193-201 EBV 0.8 1022 NEG 187 3705 12 EBV EBNA3A FLRGRAYGL effector T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-B*08:01 B2M MHCI -7429 chip0423_373907 7.5 12.35 Chip2 T1D_6 T1D TGTGCCTCCCAAGGAGGAAGCCAAGGAAATCTCATCTTT CASQGGSQGNLIF TRAV20*01 TRAJ42*01 30.0 2140.0 CASQGGSQGNLIF_ 7 5293 ROTA-VP6 ROTA 0.6 47 NEG 172 5121 7 RotavirusA VP6 TLLANVTAV transitional T cells between effector and memory populations PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*02:01 B2M MHCI -7430 chip0423_749227 10.57 7.88 Chip2 T1D_4 T1D TGTGCCAGCAGTTTAACGGGGCCCATACCCAGCACAGATACGCAGTATTTT CASSLTGPIPSTDTQYF TRBV27*01 TRBJ2-3*01 43.0 1796.0 _CASSLTGPIPSTDTQYF 2 5860 EBNA3A-158-166 EBV 0.5 444 NEG 205 5655 10 EBV EBNA3A QAKWRLQTL effector memory T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-B*08:01 B2M MHCI -7431 chip0423_736191 11.33 7.24 Chip2 T1D_5 T1D TGTGCAGCAAAAGAAACCTCCTACGACAAGGTGATATTT CAAKETSYDKVIF TRAV13-1*01 TRAJ50*01 22.0 1357.0 TGTGCCAGCAGCTTATTAGGACGATCGAACACTGAAGCTTTCTTT CASSLLGRSNTEAFF TRBV7-9*01 TRBJ1-1*01 59.0 1537.0 CAAKETSYDKVIF_CASSLLGRSNTEAFF 13 4808 BZLF1-190-197 EBV 0.69 2156 NEG 194 4614 10 EBV BZLF1 RAKFKQLL effector memory T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-B*08:01 B2M MHCI -7432 chip0423_278945 11.15 8.82 Chip2 T1D_4 T1D TGTGCCAGCAGCGCAGACAGCGATTATGGCTACACCTTC CASSADSDYGYTF TRBV9*01 TRBJ1-2*01 6.0 372.0 _CASSADSDYGYTF 5 4137 EBV-LMP1-1 EBV 0.88 237 NEG 176 3961 10 EBV LMP1 YLLEMLWRL effector memory T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*02:01 B2M MHCI -7433 chip0423_709103 -2.47 11.0 Chip2 T1D_6 T1D _ 6746 4853 MART1-A28L MART1 0.93 84 NEG 171 4682 3 HomoSapiens MART1 ALGIGILTV Naive T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*02:01 B2M MHCI -7434 chip0423_261998 -3.55 10.28 Chip2 T1D_6 T1D TGCGCCAGCAGCTGGGGGATAATGGGGGAGCAGTACTTC CASSWGIMGEQYF TRBV5-1*01 TRBJ2-7*01 18.0 895.0 _CASSWGIMGEQYF 1 5378 PGT-178 PGT 0.82 1480 PGT-178 150 5228 2 HomoSapiens PGT LLAGIGTVPI Naive T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*02:01 B2M MHCI -7435 chip0423_876784 14.76 10.71 Chip2 T1D_4 T1D TGCATCGTCAGAGAGGGAGGAGGTGCTGACGGACTCCCCTTT CIVREGGGADGLPF TRAV26-1*01 TRAJ45*01 56.0 3615.0 TGTGCCAGCAGCTTAGCGGTCGGAGAAGGGCCCCAGCATTTT CASSLAVGEGPQHF TRBV7-9*01 TRBJ1-5*01 99.0 4671.0 CIVREGGGADGLPF_CASSLAVGEGPQHF 21 3611 BZLF1-190-197 EBV 0.81 2156 BZLF1-190-197 152 3459 12 EBV BZLF1 RAKFKQLL effector T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-B*08:01 B2M MHCI -7436 chip0423_728307 9.15 10.23 Chip2 T1D_5 T1D _ 6746 5133 BZLF1-190-197 EBV 0.64 2156 BZLF1-190-197 183 4950 8 EBV BZLF1 RAKFKQLL effector memory T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-B*08:01 B2M MHCI -7437 chip0423_349306 4.97 10.79 Chip2 T1D_4 T1D TGTGCTCTCACTACCTATGGCCAGAATTTTGTCTTT CALTTYGQNFVF TRAV38-1*01 TRAJ26*01 1.0 154.0 TGCAGTGCCTCTCGTGACTCCTACGAGCAGTACTTC CSASRDSYEQYF TRBV20-1*01 TRBJ2-7*01 4.0 227.0 CALTTYGQNFVF_CSASRDSYEQYF 15 5509 EBV-LMP1-1 EBV 1.0 237 NEG 162 5347 6 EBV LMP1 YLLEMLWRL central memory T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*02:01 B2M MHCI -7438 chip0423_704400 -2.93 8.34 Chip2 T1D_6 T1D TGTGCAATGAGTCAGTCTAACTTTGGAAATGAGAAATTAACCTTT CAMSQSNFGNEKLTF TRAV12-3*01 TRAJ48*01 50.0 1530.0 TGCAGTGCTTACAGGGGCTCGAACACCGGGGAGCTGTTTTTT CSAYRGSNTGELFF TRBV20-1*01 TRBJ2-2*01 26.0 1159.0 CAMSQSNFGNEKLTF_CSAYRGSNTGELFF 1 7378 PGT-178 PGT 0.74 1480 PGT-178 152 7226 2 HomoSapiens PGT LLAGIGTVPI Naive T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*02:01 B2M MHCI -7439 chip0423_827193 6.3 9.61 Chip2 T1D_4 T1D TGTGCCAGCAGCGCAGACAGCGATTATGGCTACACCTTC CASSADSDYGYTF TRBV9*01 TRBJ1-2*01 24.0 1014.0 _CASSADSDYGYTF 5 7200 EBV-LMP1-1 EBV 0.56 237 NEG 185 7015 6 EBV LMP1 YLLEMLWRL central memory T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*02:01 B2M MHCI -7440 chip0423_108233 11.31 9.49 Chip2 T1D_5 T1D TGTGCCAGCAGCGCCCTTGGGGGCGACAACACTGAAGCTTTCTTT CASSALGGDNTEAFF TRAV36/DV7*01 TRAJ40*01 2.0 8.0 TGTGCCAGCAGCGCCCTTGGGGGAGACAACACTGAAGCTTTCTTT CASSALGGDNTEAFF TRBV7-9*01 TRBJ1-1*01 48.0 1914.0 CASSALGGDNTEAFF_CASSALGGDNTEAFF 1 3618 BZLF1-190-197 EBV 0.76 2156 NEG 176 3442 10 EBV BZLF1 RAKFKQLL effector memory T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-B*08:01 B2M MHCI -7441 chip0423_814985 10.12 6.83 Chip2 T1D_5 T1D TGTGCAGCACTGGAAACCTCCTACGACAAGGTGATATTT CAALETSYDKVIF TRAV13-1*01 TRAJ50*01 20.0 2011.0 TGTGCCAGCAGCCCCCCGGGGGCGAATGAAAAACTGTTTTTT CASSPPGANEKLFF TRBV5-4*01 TRBJ1-4*01 2.0 57.0 CAALETSYDKVIF_CASSPPGANEKLFF 1 7560 BZLF1-190-197 EBV 0.5 2156 NEG 198 7362 10 EBV BZLF1 RAKFKQLL effector memory T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-B*08:01 B2M MHCI -7442 chip0423_82034 5.13 10.81 Chip2 healthy_4 healthy TGTGCTTTTACTGGCGGCTTCAAAACTATCTTT CAFTGGFKTIF TRAV17*01 TRAJ9*01 25.0 2060.0 TGTGCCAGCAGCCCGCCAAATGGGAGGGCCGAGCAGTACTTC CASSPPNGRAEQYF TRBV5-6*01 TRBJ2-7*01 3.0 75.0 CAFTGGFKTIF_CASSPPNGRAEQYF 1 6436 M1 FLU 1.0 1250 NEG 156 6280 6 InfluenzaA M1 GILGFVFTL central memory T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*02:01 B2M MHCI -7443 chip0423_596730 13.46 7.89 Chip2 T1D_6 T1D TGTGCCAGCAGCTTGGGACAGGCCTACGAGCAGTACTTC CASSLGQAYEQYF TRBV7-8*01 TRBJ2-7*01 59.0 2997.0 _CASSLGQAYEQYF 175 4413 EBNA3A-193-201 EBV 0.89 1022 EBNA3A-193-201 202 4211 10 EBV EBNA3A FLRGRAYGL effector memory T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-B*08:01 B2M MHCI -7444 chip0423_751065 7.48 10.67 Chip2 T1D_6 T1D TGTGCCAGCAGCTTGGGACAGGCCTACGAGCAGTACTTC CASSLGQAYEQYF TRBV7-8*01 TRBJ2-7*01 9.0 613.0 _CASSLGQAYEQYF 175 5765 EBNA3A-193-201 EBV 0.8 1022 EBNA3A-193-201 181 5584 7 EBV EBNA3A FLRGRAYGL transitional T cells between effector and memory populations PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-B*08:01 B2M MHCI -7445 chip0423_204737 -3.75 10.79 Chip2 T1D_6 T1D TGTGCCAGCAAGGTTGGACAGGGTGGTACGGGGACCCAGTACTTC CASKVGQGGTGTQYF TRBV11-2*01 TRBJ2-5*01 40.0 1556.0 _CASKVGQGGTGTQYF 1 5234 NP140-148 FLU 0.55 102 NEG 158 5076 2 InfluenzaA NP HSNLNDATY Naive T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*01:01 B2M MHCI -7446 chip0423_552843 -2.95 9.32 Chip2 T1D_6 T1D TGCGCCAGCAGTAGTGGGCCAGGGGAATACAATGAGCAGTTCTTC CASSSGPGEYNEQFF TRBV4-1*01 TRBJ2-1*01 26.0 1193.0 _CASSSGPGEYNEQFF 1 6479 BZLF1-190-197 EBV 0.54 2156 NEG 152 6327 2 EBV BZLF1 RAKFKQLL Naive T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-B*08:01 B2M MHCI -7447 chip0423_64464 -4.26 8.56 Chip2 T1D_4 T1D TGTGCAATGAATGGCGACTACAAGCTCAGCTTT CAMNGDYKLSF TRAV12-3*01 TRAJ20*01 17.0 2124.0 TGTGCCAGCACCCAGGAGACTGGGGCCAACGTCCTGACTTTC CASTQETGANVLTF TRBV7-9*01 TRBJ2-6*01 64.0 4140.0 CAMNGDYKLSF_CASTQETGANVLTF 1 5171 ZNT8-145-153 ZNT8 0.46 14 NEG 151 5020 2 HomoSapiens ZNT8 LLSILCIWV Naive T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*02:01 B2M MHCI -7448 chip0423_3706 10.59 7.24 Chip2 T1D_6 T1D TGTGCCAGCAGCGTTAGCGGGGCCCCCTACGAGCAGTACTTC CASSVSGAPYEQYF TRBV9*01 TRBJ2-7*01 17.0 1063.0 _CASSVSGAPYEQYF 21 5748 EBNA3A-193-201 EBV 0.47 1022 NEG 196 5552 10 EBV EBNA3A FLRGRAYGL effector memory T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-B*08:01 B2M MHCI -7449 chip0423_740507 8.93 8.47 Chip2 T1D_5 T1D TGTGCCAGCCAACTAGCGGGAGGCACCGGGGAGCTGTTTTTT CASQLAGGTGELFF TRBV24-1*01 TRBJ2-2*01 5.0 307.0 _CASQLAGGTGELFF 69 6454 BZLF1-190-197 EBV 0.6 2156 BZLF1-190-197 174 6280 8 EBV BZLF1 RAKFKQLL effector memory T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-B*08:01 B2M MHCI -7450 chip0423_788800 11.03 9.5 Chip2 T1D_4 T1D TGTGCCAGCAGCGCAGACAGCGATTATGGCTACACCTTC CASSADSDYGYTF TRBV9*01 TRBJ1-2*01 6.0 345.0 _CASSADSDYGYTF 5 5161 EBV-LMP1-1 EBV 0.67 237 NEG 203 4958 9 EBV LMP1 YLLEMLWRL effector memory T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*02:01 B2M MHCI -7451 chip0423_757781 15.7 10.34 Chip2 T1D_4 T1D TGCATCGTCAGAGAAGGAGGAGGTGCTGACGGCCTCACCTTT CIVREGGGADGLTF TRAV26-1*01 TRAJ45*01 10.0 633.0 TGTGCCAGCAGCTTAGCGGTCGGAGAAGGGCCCCAGCATTTT CASSLAVGEGPQHF TRBV7-9*01 TRBJ1-5*01 30.0 1266.0 CIVREGGGADGLTF_CASSLAVGEGPQHF 68 3288 BZLF1-190-197 EBV 0.89 2156 BZLF1-190-197 213 3075 12 EBV BZLF1 RAKFKQLL effector T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-B*08:01 B2M MHCI -7452 chip0423_716546 6.27 9.58 Chip2 T1D_6 T1D TGTGCTGTGAAGGTTTGGAGATGGCCTGTAGCTGCTCTTT CAVKVWag??atGL*LLF TRAV8-4*01 TRAJ16*01 6.0 540.0 TGCGCCAGCAGTGACATTAGGGAGGGGCAGGGTGAAGCTTTCTTT CASSDIREGQGEAFF TRBV10-2*01 TRBJ1-1*01 1.0 16.0 CAVKVWag??atGL*LLF_CASSDIREGQGEAFF 1 10926 EBNA3A-158-166 EBV 0.92 444 EBNA3A-158-166 179 10747 6 EBV EBNA3A QAKWRLQTL central memory T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-B*08:01 B2M MHCI -7453 chip0423_637924 5.79 10.23 Chip2 T1D_6 T1D TGCGCCAGCAGTGACATTAGGGAGGGGCAGGGTGAAGCTTTCTTT CASSDIREGQGEAFF TRBV10-2*01 TRBJ1-1*01 62.0 2752.0 _CASSDIREGQGEAFF 37 7659 EBNA3A-158-166 EBV 0.71 444 NEG 169 7490 6 EBV EBNA3A QAKWRLQTL central memory T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-B*08:01 B2M MHCI -7454 chip0423_705113 -0.62 10.39 Chip2 healthy_4 healthy TGTGCCGTGGAAGACTCAGGAACCTACAAATACATCTTT CAVEDSGTYKYIF TRAV39*01 TRAJ40*01 26.0 1979.0 TGCAGTGCTATCTCCCTTGGCAGATCAAACACCGGGGAGCTGTTTTTT CSAISLGRSNTGELFF TRBV20-1*01 TRBJ2-2*01 23.0 1023.0 CAVEDSGTYKYIF_CSAISLGRSNTGELFF 1 6141 ZNT8-173-181 ZNT8 0.83 27 ZNT8-173-181 169 5972 3 HomoSapiens ZNT8 IQATVMIIV Naive T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*02:01 B2M MHCI -7455 chip0423_630751 10.73 11.26 Chip2 T1D_6 T1D TGCAGCGCCGGCAGGGACGGGACTAATGAAAAACTGTTTTTT CSAGRDGTNEKLFF TRBV29-1*01 TRBJ1-4*01 90.0 4115.0 _CSAGRDGTNEKLFF 159 3822 EBV-BLMF1 EBV 0.67 2531 NEG 179 3643 9 EBV BLMF1 GLCTLVAML effector memory T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*02:01 B2M MHCI -7456 chip0423_229952 9.29 8.25 Chip2 healthy_5 healthy _ 6746 5154 BZLF1-190-197 EBV 0.72 2156 NEG 138 5016 8 EBV BZLF1 RAKFKQLL effector memory T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-B*08:01 B2M MHCI -7457 chip0423_867590 6.54 14.56 Chip2 T1D_5 T1D TGTGCAGGATTCCCGTGGGCTGCAGGCCACACGCTACCTTTT CAGFPWAAGHTLPF TRAV25*01 TRAJ17*01 7.0 716.0 CAGFPWAAGHTLPF_ 1 3853 NP44-52 FLU 0.79 474 NP44-52 159 3694 7 InfluenzaA NP CTELKLSDY transitional T cells between effector and memory populations PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*01:01 B2M MHCI -7458 chip0423_318597 9.92 7.0 Chip2 T1D_5 T1D TGTGCCGTGATGATGGAATATGGAAACAAACTGGTCTTT CAVMMEYGNKLVF TRAV12-2*01 TRAJ47*01 26.0 2007.0 TGCGCCAGCAGCCAACTACCGACAGGGTATTTCTCCGAGCAGTACTTC CASSQLPTGYFSEQYF TRBV4-1*01 TRBJ2-7*01 24.0 879.0 CAVMMEYGNKLVF_CASSQLPTGYFSEQYF 3 7259 BZLF1-190-197 EBV 0.46 2156 BZLF1-190-197 179 7080 10 EBV BZLF1 RAKFKQLL effector memory T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-B*08:01 B2M MHCI -7459 chip0423_765983 11.24 10.76 Chip2 T1D_4 T1D TGTGCTGTGAGAGACACGACGTGGGCTGCCAAGATCATCTTT CAVRDTTWAAKIIF TRAV3*01 TRAJ30*01 42.0 1814.0 CAVRDTTWAAKIIF_ 1 5602 EBNA3A-193-201 EBV 0.67 1022 NEG 166 5436 9 EBV EBNA3A FLRGRAYGL effector memory T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-B*08:01 B2M MHCI -7460 chip0423_534274 11.0 8.9 Chip2 T1D_4 T1D TGTGCCAGCAGCCAAGTCAACAACCCGGGGGATGGCTACACCTTC CASSQVNNPGDGYTF TRBV14*01 TRBJ1-2*01 11.0 313.0 _CASSQVNNPGDGYTF 94 4379 EBNA3A-158-166 EBV 0.83 444 EBNA3A-158-166 187 4192 10 EBV EBNA3A QAKWRLQTL effector memory T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-B*08:01 B2M MHCI -7461 chip0423_465081 12.57 6.45 Chip2 T1D_6 T1D TGTGCCAGCAGCTTGGGACAGGCCTACGAGCAGTACTTC CASSLGQAYEQYF TRBV7-8*01 TRBJ2-7*01 59.0 2146.0 _CASSLGQAYEQYF 175 4669 EBNA3A-193-201 EBV 0.93 1022 EBNA3A-193-201 195 4474 10 EBV EBNA3A FLRGRAYGL effector memory T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-B*08:01 B2M MHCI -7462 chip0423_371424 12.66 6.58 Chip2 T1D_6 T1D TGCATCCTCCCACTTGCTGGTGGTACTAGCTATGGAAAGCTGACATTT CILPLAGGTSYGKLTF TRAV26-2*01 TRAJ52*01 23.0 831.0 TGTGCCAGCAGCTTGGGACAGGCCTACGAGCAGTACTTC CASSLGQAYEQYF TRBV7-8*01 TRBJ2-7*01 15.0 1049.0 CILPLAGGTSYGKLTF_CASSLGQAYEQYF 308 4515 EBNA3A-193-201 EBV 0.79 1022 EBNA3A-193-201 196 4319 10 EBV EBNA3A FLRGRAYGL effector memory T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-B*08:01 B2M MHCI -7463 chip0423_304587 5.48 13.04 Chip2 healthy_3 healthy TGTGCCAGCAGTGAAATGTGGGGAGCACCCCTCCACTTT CASSEMWGAPLHF TRBV2*01 TRBJ1-6*01 34.0 2336.0 _CASSEMWGAPLHF 14 7112 NP44-52 FLU 0.89 474 NP44-52 151 6961 7 InfluenzaA NP CTELKLSDY transitional T cells between effector and memory populations PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*01:01 B2M MHCI -7464 chip0423_76674 7.56 13.97 Chip2 T1D_4 T1D TGTGCAGCTGGGGGAGGAGGTGCTGACGGACTCACCTTT CAAGGGGADGLTF TRAV13-1*01 TRAJ45*01 12.0 363.0 CAAGGGGADGLTF_ 1 2791 BZLF1-190-197 EBV 0.77 2156 NEG 188 2603 7 EBV BZLF1 RAKFKQLL transitional T cells between effector and memory populations PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-B*08:01 B2M MHCI -7465 chip0423_324359 -2.46 10.56 Chip2 T1D_4 T1D TGTGCTGTGAGTGACTCGGAGGCTACCTCAGGAACCTACAAATACATCTTT CAVSDSEATSGTYKYIF TRAV8-4*01 TRAJ40*01 87.0 1953.0 TGTGCCAGCAGTCCGGGTCGGAGCTCTGAAAACACCATATATTTT CASSPGRSSENTIYF TRBV5-4*01 TRBJ1-3*01 18.0 511.0 CAVSDSEATSGTYKYIF_CASSPGRSSENTIYF 1 6194 PTPRN-180-188 PTPRN 0.73 18 PTPRN-180-188 179 6015 3 HomoSapiens PTPRN LLPPLLEHL Naive T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*02:01 B2M MHCI -7466 chip0423_841272 -1.46 9.41 Chip2 T1D_4 T1D TGTGCCAGCAGTCTCGGCCCGGGTGTTGCGCTGGAGTACTTC CASSLGPGVALEYF TRBV6-1*01 TRBJ2-7*01 10.0 49.0 _CASSLGPGVALEYF 1 6940 M1 FLU 0.44 1250 NEG 178 6762 3 InfluenzaA M1 GILGFVFTL Naive T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*02:01 B2M MHCI -7467 chip0423_645664 10.41 10.2 Chip2 T1D_4 T1D TGTGCCAGCAGCTTAACGGTTCTGGCAGGTCCAAACACTGAAGCTTTCTTT CASSLTVLAGPNTEAFF TRBV7-3*01 TRBJ1-1*01 42.0 1130.0 _CASSLTVLAGPNTEAFF 32 5544 BZLF1-190-197 EBV 0.96 2156 BZLF1-190-197 193 5351 9 EBV BZLF1 RAKFKQLL effector memory T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-B*08:01 B2M MHCI -7468 chip0423_155913 -3.98 11.49 Chip2 T1D_4 T1D _ 6746 4879 ZNT8-PTE-9 ZNT8 0.56 18 ZNT8-PTE-9 154 4725 1 HomoSapiens ZNT8 PTEKGANEY Naive T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*01:01 B2M MHCI -7469 chip0423_265595 11.18 10.43 Chip2 T1D_4 T1D TGTGCTACGGGGGGCGGTTCGGGAGACAGCACCCTCACCTTT CATGGGSGDSTLTF TRAV17*01 TRAJ11*01 12.0 319.0 TGTCCCAGCAGATTAGCGGTCGGAGAAGGGCCCCAGCATTTT CPSRLAVGEGPQHF TRBV7-9*01 TRBJ1-5*01 5.0 353.0 CATGGGSGDSTLTF_CPSRLAVGEGPQHF 1 3666 BZLF1-190-197 EBV 0.79 2156 BZLF1-190-197 169 3497 9 EBV BZLF1 RAKFKQLL effector memory T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-B*08:01 B2M MHCI -7470 chip0423_244570 13.66 8.82 Chip2 T1D_4 T1D TGTGCCAGCAGCTTAGCGGTCGGAGAAGGGCCCCAGCATTTT CASSLAVGEGPQHF TRBV7-9*01 TRBJ1-5*01 29.0 905.0 _CASSLAVGEGPQHF 113 3153 BZLF1-190-197 EBV 0.86 2156 BZLF1-190-197 172 2981 12 EBV BZLF1 RAKFKQLL effector T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-B*08:01 B2M MHCI -7471 chip0423_858352 -1.45 7.73 Chip2 T1D_5 T1D _ 6746 7988 GAD2-MMI-8 GAD65 0.9 40 GAD2-MMI-8 177 7811 3 HomoSapiens GAD2 MMIARFKM Naive T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-B*08:01 B2M MHCI -7472 chip0423_802440 6.85 12.54 Chip2 healthy_3 healthy _ 6746 5120 NP44-52 FLU 0.87 474 NP44-52 125 4995 7 InfluenzaA NP CTELKLSDY transitional T cells between effector and memory populations PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*01:01 B2M MHCI -7473 chip0423_362208 10.4 7.15 Chip2 T1D_4 T1D TGTGCTGTGAGTGATGGAGAAGGAGCCCAGAAGCTGGTATTT CAVSDGEGAQKLVF TRAV8-6*01 TRAJ54*01 38.0 2044.0 TGTGCCAGCAGCTTAACGGTTCTGGCAGGTCCAAACACTGAAGCTTTCTTT CASSLTVLAGPNTEAFF TRBV7-3*01 TRBJ1-1*01 4.0 42.0 CAVSDGEGAQKLVF_CASSLTVLAGPNTEAFF 44 5603 BZLF1-190-197 EBV 0.81 2156 BZLF1-190-197 175 5428 10 EBV BZLF1 RAKFKQLL effector memory T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-B*08:01 B2M MHCI -7474 chip0423_304956 11.71 8.23 Chip2 T1D_6 T1D TGCATCCTCCCACTTGCTGGTGGTACTAGCTATGGAAAGCTGACATTT CILPLAGGTSYGKLTF TRAV26-2*01 TRAJ52*01 22.0 1072.0 TGTGCCAGCAGCTTGGGACAGGCCTACGAGCAGTACTTC CASSLGQAYEQYF TRBV7-8*01 TRBJ2-7*01 38.0 1381.0 CILPLAGGTSYGKLTF_CASSLGQAYEQYF 308 4819 EBNA3A-193-201 EBV 0.7 1022 NEG 191 4628 10 EBV EBNA3A FLRGRAYGL effector memory T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-B*08:01 B2M MHCI -7475 chip0423_278569 -4.04 8.87 Chip2 T1D_6 T1D TGTGCTCTGGAAGGAGGTGCTGACGGACTCACCTTT CALEGGADGLTF TRAV9-2*01 TRAJ45*01 62.0 5591.0 TGCGCCAGCAGCCACGGACAGCTAATGAACACTGAAGCTTTCTTT CASSHGQLMNTEAFF TRBV4-3*01 TRBJ1-1*01 45.0 1596.0 CALEGGADGLTF_CASSHGQLMNTEAFF 1 5690 MART1-A28L MART1 0.55 84 NEG 170 5520 2 HomoSapiens MART1 ALGIGILTV Naive T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*02:01 B2M MHCI -7476 chip0423_861979 12.54 6.54 Chip2 T1D_6 T1D TATGCACCAAGCAAGATAGAGGTGGCGCTGCTGACGCACTCACCTTT YAPSKIEgt?GAADALTF TRAV23/DV6*01 TRAJ45*01 8.0 505.0 TGTGCCAGCAGCTTGGGACAGGCCTACGAGCAGTACTTC CASSLGQAYEQYF TRBV7-8*01 TRBJ2-7*01 19.0 1072.0 YAPSKIEgt?GAADALTF_CASSLGQAYEQYF 1 5206 EBNA3A-193-201 EBV 0.73 1022 NEG 172 5034 10 EBV EBNA3A FLRGRAYGL effector memory T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-B*08:01 B2M MHCI -7477 chip0423_714509 9.25 9.57 Chip2 T1D_5 T1D _ 6746 6797 BZLF1-190-197 EBV 0.41 2156 BZLF1-190-197 181 6616 8 EBV BZLF1 RAKFKQLL effector memory T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-B*08:01 B2M MHCI -7478 chip0423_221624 12.63 10.88 Chip2 T1D_5 T1D TGTGCAGCAAGTGAAACCTCCTACGACAAGGTGATATTT CAASETSYDKVIF TRAV13-1*01 TRAJ50*01 88.0 7413.0 CAASETSYDKVIF_ 51 4529 BZLF1-190-197 EBV 0.6 2156 NEG 173 4356 9 EBV BZLF1 RAKFKQLL effector memory T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-B*08:01 B2M MHCI -7479 chip0423_211115 -1.73 10.77 Chip2 T1D_6 T1D TGTGCAGCGCTCGACTCAAATTCCGGGTATGCACTCAACTTC CAALDSNSGYALNF TRAV25*01 TRAJ41*01 79.0 4761.0 TGTGCCAGCAGCGATAGTGGATCTGGGGCCAACGTCCTGACTTTC CASSDSGSGANVLTF TRBV12-3*01,TRBV12-4*01 TRBJ2-6*01 12.0 591.0 CAALDSNSGYALNF_CASSDSGSGANVLTF 1 5387 GAD2-QQD-10 GAD65 0.61 7 GAD2-QQD-10 160 5227 3 HomoSapiens GAD2 QQDKHYDLSY Naive T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*01:01 B2M MHCI -7480 chip0423_59282 10.52 10.49 Chip2 T1D_5 T1D TGTGCAGCGGGGGAAACCTCCTACGACAAGGTGATATTT CAAGETSYDKVIF TRAV13-1*01 TRAJ50*01 21.0 2040.0 TGTGCCAAACCTGATGGCGGGGAAGACACTGAAGCTTTCTTT CAKPDGGEDTEAFF TRBV6-8*01 TRBJ1-1*01 42.0 1289.0 CAAGETSYDKVIF_CAKPDGGEDTEAFF 4 5418 BZLF1-190-197 EBV 0.5 2156 NEG 189 5229 9 EBV BZLF1 RAKFKQLL effector memory T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-B*08:01 B2M MHCI -7481 chip0423_855900 7.04 12.16 Chip2 healthy_4 healthy _ 6746 6036 PGT-178 PGT 0.81 1480 PGT-178 159 5877 7 HomoSapiens PGT LLAGIGTVPI transitional T cells between effector and memory populations PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*02:01 B2M MHCI -7482 chip0423_781947 5.55 12.55 Chip2 healthy_3 healthy TGTGCTGGAGCTTGGGGCTCTAGCAACACAGGCAAACTAATCTTT CAGAWGSSNTGKLIF TRAV27*01 TRAJ37*01 39.0 1662.0 TGTGCCAGTAGTATTCGTTCGGCGTACGAGCAGTACTTC CASSIRSAYEQYF TRBV19*01 TRBJ2-7*01 11.0 570.0 CAGAWGSSNTGKLIF_CASSIRSAYEQYF 1 7026 M1 FLU 0.67 1250 NEG 154 6872 7 InfluenzaA M1 GILGFVFTL transitional T cells between effector and memory populations PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*02:01 B2M MHCI -7483 chip0423_522500 14.86 8.59 Chip2 T1D_5 T1D TGTGCTAGTGGTCCGGACATATCCTACTCCTACGAGCAGTACTTC CASGPDISYSYEQYF TRBV12-5*01 TRBJ2-7*01 33.0 2227.0 _CASGPDISYSYEQYF 10 3095 BZLF1-190-197 EBV 0.75 2156 NEG 182 2913 12 EBV BZLF1 RAKFKQLL effector T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-B*08:01 B2M MHCI -7484 chip0423_862829 -3.5 10.33 Chip2 T1D_5 T1D _ 6746 5413 G6PC2-YLK-8 IGRP 0.45 27 NEG 134 5279 2 HomoSapiens G6PC2 YLKTNLFL Naive T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-B*08:01 B2M MHCI -7485 chip0423_614039 7.02 14.27 Chip2 T1D_6 T1D TGCGGCACAGAGACGGATAATAATGCAGGCAACATGCTCACCTTT CGTETDNNAGNMLTF TRAV30*01 TRAJ39*01 45.0 1704.0 TGTGCCAGTAGTATATATAGCATCAATGAGCAGTTCTTC CASSIYSINEQFF TRBV19*01 TRBJ2-1*01 31.0 1344.0 CGTETDNNAGNMLTF_CASSIYSINEQFF 3 3857 M1 FLU 0.86 1250 NEG 177 3680 7 InfluenzaA M1 GILGFVFTL transitional T cells between effector and memory populations PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*02:01 B2M MHCI -7486 chip0423_197384 11.73 12.94 Chip2 T1D_4 T1D TGCATCGTCAGAGAGGGGGGCGGTGCTGTCGGACTCCCCTTT CIVREGGGAVGLPF TRAV26-1*01 TRAJ45*01 8.0 337.0 TGTGCCAGCAGCTTAGCGGTCGGAGAAGGGCCCCAGCATTTT CASSLAVGEGPQHF TRBV7-9*01 TRBJ1-5*01 55.0 1998.0 CIVREGGGAVGLPF_CASSLAVGEGPQHF 1 2513 BZLF1-190-197 EBV 0.75 2156 NEG 193 2320 11 EBV BZLF1 RAKFKQLL effector T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-B*08:01 B2M MHCI -7487 chip0423_73689 10.25 7.1 Chip2 T1D_5 T1D TGTGCCACCAGTGAGGGGGGCCGGGGCACCGGGGAGCTGTTTTTT CATSEGGRGTGELFF TRBV24-1*01 TRBJ2-2*01 48.0 2300.0 _CATSEGGRGTGELFF 1 6975 BZLF1-190-197 EBV 0.73 2156 BZLF1-190-197 189 6786 10 EBV BZLF1 RAKFKQLL effector memory T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-B*08:01 B2M MHCI -7488 chip0423_67016 11.29 9.96 Chip2 T1D_5 T1D TGTGTGGTGAGGGCATGGATAGCAACTATCAGTTAATCTGG CVVRAWat?SNYQLIW TRAV10*01 TRAJ33*01 84.0 4035.0 TGTGCCAGCAGTCCCCCGGGGAGAAATGAAAAACTGTTTTTT CASSPPGRNEKLFF TRBV12-3*01,TRBV12-4*01 TRBJ1-4*01 45.0 1832.0 CVVRAWat?SNYQLIW_CASSPPGRNEKLFF 1 3818 BZLF1-190-197 EBV 0.73 2156 NEG 174 3644 9 EBV BZLF1 RAKFKQLL effector memory T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-B*08:01 B2M MHCI -7489 chip0423_228108 6.73 11.93 Chip2 healthy_3 healthy TGTGCCAGTAGTCCACTCCTAGCGACCCAAGGCTACGAGCAGTACTTC CASSPLLATQGYEQYF TRBV19*01 TRBJ2-7*01 20.0 635.0 _CASSPLLATQGYEQYF 3 5749 NP44-52 FLU 0.78 474 NP44-52 158 5591 7 InfluenzaA NP CTELKLSDY transitional T cells between effector and memory populations PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*01:01 B2M MHCI -7490 chip0423_94655 10.47 10.52 Chip2 T1D_4 T1D TGTGCCGTGAGCACGCGCTTT CAVSTRF TRAV8-1*01 TRAJ43*01 5.0 623.0 TGTGCCAGCAGTACCGGGACTAGCAACAATGAGCAGTTCTTC CASSTGTSNNEQFF TRBV6-2*01,TRBV6-3*01 TRBJ2-1*01 20.0 1556.0 CAVSTRF_CASSTGTSNNEQFF 1 5350 EBV-BRLF1 EBV 0.5 1264 NEG 155 5195 9 EBV BRLF1 YVLDHLIVV effector memory T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*02:01 B2M MHCI -7491 chip0423_90523 11.12 7.84 Chip2 T1D_6 T1D _ 6746 5345 EBNA3A-158-166 EBV 0.57 444 NEG 192 5153 10 EBV EBNA3A QAKWRLQTL effector memory T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-B*08:01 B2M MHCI -7492 chip0423_829964 -2.79 8.9 Chip2 T1D_5 T1D TGTGTGGTGAAGAAGTGATCTGGGGCTGGGAGTTACCACCTCCCTTTC CVVKK*SGAGSYHLPF TRAV12-1*01 TRAJ28*01 9.0 171.0 TGTGCCAGCGCCTCCCCCCCTTTCTTT CASASPPFF TRBV19*01 TRBJ1-1*01 14.0 1083.0 CVVKK*SGAGSYHLPF_CASASPPFF 1 6137 GAD2-STA-10 GAD65 0.5 7 GAD2-STA-10 165 5972 3 HomoSapiens GAD2 STANTNMFTY Naive T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*01:01 B2M MHCI -7493 chip0423_435658 12.23 7.28 Chip2 T1D_4 T1D TGTGCCGCCTCTGAAACCTCCTACGACAAGGTGATATTT CAASETSYDKVIF TRAV13-1*01 TRAJ50*01 21.0 1435.0 TGTGCCAGCAGCTCGACAGGGGGCGGGGATCAGCCCCAGCATTTT CASSSTGGGDQPQHF TRBV7-9*01 TRBJ1-5*01 31.0 1264.0 CAASETSYDKVIF_CASSSTGGGDQPQHF 9 4382 BZLF1-190-197 EBV 0.5 2156 NEG 181 4201 10 EBV BZLF1 RAKFKQLL effector memory T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-B*08:01 B2M MHCI -7494 chip0423_39027 6.06 12.49 Chip2 healthy_3 healthy TGTGCTGCGCAGGCCGTCGGACACCTGTTCCCCGTTCTATTTT CAAQAVG??cTCSPFYF TRAV20*01 TRAJ49*01 3.0 94.0 CAAQAVG??cTCSPFYF_ 1 6771 NP44-52 FLU 0.74 474 NEG 158 6613 7 InfluenzaA NP CTELKLSDY transitional T cells between effector and memory populations PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*01:01 B2M MHCI -7495 chip0423_529270 -3.81 10.41 Chip2 T1D_6 T1D TGTGCAATGAGCTCGGGAGGTGGGGGTTACCAGAAAGTTACCTTT CAMSSGGGGYQKVTF TRAV12-3*01 TRAJ13*01 62.0 3125.0 TGTGCCAGCAGCTTAGATCGATGGGGGACCGGGGAGCTGTTTTTT CASSLDRWGTGELFF TRBV11-2*01 TRBJ2-2*01 7.0 178.0 CAMSSGGGGYQKVTF_CASSLDRWGTGELFF 1 5742 PGT-178 PGT 0.66 1480 PGT-178 161 5581 2 HomoSapiens PGT LLAGIGTVPI Naive T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*02:01 B2M MHCI -7496 chip0423_526354 6.66 12.68 Chip2 T1D_4 T1D TGTGTGGTGAACATAGGGGGAGGAAGCCAAGGAAATCTCATCTTT CVVNIGGGSQGNLIF TRAV12-1*01 TRAJ42*01 17.0 548.0 CVVNIGGGSQGNLIF_ 1 6572 M1 FLU 0.58 1250 NEG 184 6388 7 InfluenzaA M1 GILGFVFTL transitional T cells between effector and memory populations PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*02:01 B2M MHCI -7497 chip0423_694878 10.43 10.27 Chip2 T1D_4 T1D TGTGCTGTGAGAGACACGACGTGGGCTGACAAGATCATCTTT CAVRDTTWADKIIF TRAV3*01 TRAJ30*01 35.0 1973.0 TGTGCCAGCAGCTTAGGAGGGGGAGAGGGGGCCAGTGAGCAGTTCTTC CASSLGGGEGASEQFF TRBV7-6*01 TRBJ2-1*01 12.0 771.0 CAVRDTTWADKIIF_CASSLGGGEGASEQFF 3 4646 EBNA3A-193-201 EBV 0.65 1022 EBNA3A-193-201 170 4476 9 EBV EBNA3A FLRGRAYGL effector memory T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-B*08:01 B2M MHCI -7498 chip0423_122030 12.67 10.18 Chip2 T1D_5 T1D TGTGCAGCGGCGGAAACCTCCTACGACAAGGTGATATTT CAAAETSYDKVIF TRAV13-1*01 TRAJ50*01 52.0 4408.0 CAAAETSYDKVIF_ 32 4491 BZLF1-190-197 EBV 0.5 2156 NEG 155 4336 9 EBV BZLF1 RAKFKQLL effector memory T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-B*08:01 B2M MHCI -7499 chip0423_448115 10.22 7.15 Chip2 T1D_4 T1D TGTGCCAGCAGCTTAGCGGTCGGAGAAGGGCCCCAGCATTTT CASSLAVGEGPQHF TRBV7-9*01 TRBJ1-5*01 73.0 2704.0 _CASSLAVGEGPQHF 113 5421 BZLF1-190-197 EBV 0.86 2156 BZLF1-190-197 189 5232 10 EBV BZLF1 RAKFKQLL effector memory T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-B*08:01 B2M MHCI -7500 chip0423_165361 11.5 10.32 Chip2 T1D_4 T1D TGCATCGTCAGAGAGGGAGGAGGTGCTGACGGACTCACCTTT CIVREGGGADGLTF TRAV26-1*01 TRAJ45*01 1.0 53.0 TGTGCCAGCAGCTTAGCGGTCGGAGAAGGGCCCCAGCATTTT CASSLAVGEGPQHF TRBV7-9*01 TRBJ1-5*01 49.0 1409.0 CIVREGGGADGLTF_CASSLAVGEGPQHF 68 3195 BZLF1-190-197 EBV 0.93 2156 BZLF1-190-197 182 3013 9 EBV BZLF1 RAKFKQLL effector memory T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-B*08:01 B2M MHCI -7501 chip0423_49310 -3.42 10.07 Chip2 T1D_6 T1D TGTGTGGTGACCCCTTCTAACTTTGGAAATGAGAAATTAACCTTT CVVTPSNFGNEKLTF TRAV12-1*01 TRAJ48*01 98.0 2857.0 TGTGCCAGCAGCCCCACAGGGAGCTCCTACAATGAGCAGTTCTTC CASSPTGSSYNEQFF TRBV2*01 TRBJ2-1*01 23.0 1426.0 CVVTPSNFGNEKLTF_CASSPTGSSYNEQFF 1 7774 PGT-178 PGT 0.68 1480 PGT-178 143 7631 2 HomoSapiens PGT LLAGIGTVPI Naive T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*02:01 B2M MHCI -7502 chip0423_832471 15.92 11.14 Chip2 T1D_4 T1D TGTGCCAGCAGCTTAGCGGTCGGAGAAGGGCCCCAGCATTTT CASSLAVGEGPQHF TRBV7-9*01 TRBJ1-5*01 38.0 1566.0 _CASSLAVGEGPQHF 113 2315 BZLF1-190-197 EBV 1.0 2156 NEG 187 2128 12 EBV BZLF1 RAKFKQLL effector T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-B*08:01 B2M MHCI -7503 chip0423_655121 9.21 8.49 Chip2 T1D_4 T1D TGTGCTGTGAGTGATGGAGAAGGAGCCCAGAAGCTGGTATTT CAVSDGEGAQKLVF TRAV8-6*01 TRAJ54*01 136.0 5313.0 TGTGCCAGCAGCTTAACGGTTCTGGCAGGTCCAAACACTGAAGCTTTCTTT CASSLTVLAGPNTEAFF TRBV7-3*01 TRBJ1-1*01 25.0 746.0 CAVSDGEGAQKLVF_CASSLTVLAGPNTEAFF 44 5409 BZLF1-190-197 EBV 0.87 2156 BZLF1-190-197 192 5217 8 EBV BZLF1 RAKFKQLL effector memory T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-B*08:01 B2M MHCI -7504 chip0423_626229 -4.63 9.67 Chip2 T1D_6 T1D TGTGCCAGCAGTTTAACAGATCCTAGCACAGATACGCAGTATTTT CASSLTDPSTDTQYF TRBV28*01 TRBJ2-3*01 9.0 254.0 _CASSLTDPSTDTQYF 1 6548 PGT-178 PGT 0.6 1480 NEG 168 6380 2 HomoSapiens PGT LLAGIGTVPI Naive T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*02:01 B2M MHCI -7505 chip0423_865254 -1.31 10.21 Chip2 healthy_3 healthy TGTGCCGTGCACTACTCTGGGGCTGGGAGTTACCAACTCACTTTC CAVHYSGAGSYQLTF TRAV8-1*01 TRAJ28*01 44.0 2080.0 TGTGCCAGCAGCTTAGGGTCCAGGGGGGGGAATGAGCAGTTCTTC CASSLGSRGGNEQFF TRBV13*01 TRBJ2-1*01 58.0 2370.0 CAVHYSGAGSYQLTF_CASSLGSRGGNEQFF 1 6649 ZNT8-293-300 ZNT8 0.75 17 NEG 181 6468 3 HomoSapiens ZNT8 LAVDGVLSV Naive T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*02:01 B2M MHCI -7506 chip0423_802077 -3.15 11.32 Chip2 T1D_6 T1D TGCGCCAGCAGCCAAAAACAGGAGCTCGAAGCTTTCTTT CASSQKQELEAFF TRBV4-3*01 TRBJ1-1*01 42.0 1841.0 _CASSQKQELEAFF 1 4086 ZNT8-115-123 ZNT8 0.61 74 NEG 172 3914 1 HomoSapiens ZNT8 LLSLFSLWL Naive T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*02:01 B2M MHCI -7507 chip0423_728296 11.4 7.15 Chip2 T1D_5 T1D TGTGCAGCAAGTGAGACCTCCTACGACAAGGTGATATTT CAASETSYDKVIF TRAV13-1*01 TRAJ50*01 24.0 1641.0 TGTGCCAGCAGCGACCTGACTGGAAACACCATATATTTT CASSDLTGNTIYF TRBV7-9*01 TRBJ1-3*01 2.0 58.0 CAASETSYDKVIF_CASSDLTGNTIYF 1 4321 BZLF1-190-197 EBV 1.0 2156 NEG 189 4132 10 EBV BZLF1 RAKFKQLL effector memory T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-B*08:01 B2M MHCI -7508 chip0423_705148 9.25 10.78 Chip2 T1D_5 T1D _ 6746 4302 BZLF1-190-197 EBV 0.91 2156 NEG 165 4137 9 EBV BZLF1 RAKFKQLL effector memory T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-B*08:01 B2M MHCI -7509 chip0423_225174 -1.7 8.09 Chip2 T1D_5 T1D TGTGCTGTGAATCCAGGAACCTACAAATACATCTTT CAVNPGTYKYIF TRAV20*01 TRAJ40*01 96.0 6044.0 CAVNPGTYKYIF_ 1 8775 IAPP-ILK-8 IAPP 0.8 20 IAPP-ILK-8 153 8622 3 HomoSapiens IAPP ILKLQVFL Naive T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-B*08:01 B2M MHCI -7510 chip0423_814307 -0.81 8.52 Chip2 T1D_6 T1D TGTGCTAGCAACACAGGCAAACTAATCTTT CASNTGKLIF TRAV1-2*01 TRAJ37*01 13.0 1354.0 TGTGCCAGCAGCGTAGCCCTCGTCCAGTCAGATACGCAGTATTTT CASSVALVQSDTQYF TRBV9*01 TRBJ2-3*01 14.0 920.0 CASNTGKLIF_CASSVALVQSDTQYF 1 6048 ZNT8-YAK-9 ZNT8 0.82 59 NEG 162 5886 4 HomoSapiens ZNT8 YAKWKLCSA Naive T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-B*08:01 B2M MHCI -7511 chip0423_785749 9.09 8.96 Chip2 healthy_4 healthy TGTGCTGTGGAGGATCAAGGGAGATCTTATAACACCGACAAGCTCATCTTT CAVEDQGRSYNTDKLIF TRAV2*01 TRAJ34*01 62.0 1947.0 TGTGCCAGCAGCTTCCCCGTCGGGGAGGGCGCCGGCAACACCATATATTTT CASSFPVGEGAGNTIYF TRBV7-6*01 TRBJ1-3*01 12.0 135.0 CAVEDQGRSYNTDKLIF_CASSFPVGEGAGNTIYF 1 5533 BZLF1-190-197 EBV 0.86 2156 NEG 162 5371 8 EBV BZLF1 RAKFKQLL effector memory T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-B*08:01 B2M MHCI -7512 chip0423_305789 5.4 11.17 Chip2 T1D_4 T1D TGTGCTCTCACTACCTATGGTCAGAATTTTGTCTTT CALTTYGQNFVF TRAV38-1*01 TRAJ26*01 2.0 318.0 TGCAGTGCCTCTCGTGACTCCTACGAGCAGTACTTC CSASRDSYEQYF TRBV20-1*01 TRBJ2-7*01 18.0 900.0 CALTTYGQNFVF_CSASRDSYEQYF 15 6325 EBV-LMP1-1 EBV 0.88 237 NEG 185 6140 6 EBV LMP1 YLLEMLWRL central memory T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*02:01 B2M MHCI -7513 chip0423_846078 -1.86 7.41 Chip2 healthy_3 healthy TGTGCAGCAGCAGAAACCTCCTACGACAAGGTGATATTT CAAAETSYDKVIF TRAV13-1*01 TRAJ50*01 20.0 1776.0 TGTGCCAGCAGCTTCGACTACCAGGTGTTCTTC CASSFDYQVFF TRBV5-8*01 TRBJ2-1*01 3.0 181.0 CAAAETSYDKVIF_CASSFDYQVFF 1 6409 NP44-52 FLU 0.78 474 NEG 150 6259 3 InfluenzaA NP CTELKLSDY Naive T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*01:01 B2M MHCI -7514 chip0423_553352 -2.56 8.49 Chip2 T1D_4 T1D TGTGCCAGCAGCCAAGTAAGCGAGGGGGCGAGCTCCTACAATGAGCAGTTCTTC CASSQVSEGASSYNEQFF TRBV4-2*01 TRBJ2-1*01 12.0 438.0 _CASSQVSEGASSYNEQFF 1 6704 PGT-178 PGT 0.67 1480 NEG 141 6563 2 HomoSapiens PGT LLAGIGTVPI Naive T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*02:01 B2M MHCI -7515 chip0423_858915 10.98 10.51 Chip2 T1D_4 T1D TGTGCTGTCAATTCAGGAAACACACCTCTTGTCTTT CAVNSGNTPLVF TRAV1-2*01 TRAJ29*01 25.0 2583.0 TGTGCCAGCAGCCAAGTCAACAACCCGGGGGATGGCTACACCTTC CASSQVNNPGDGYTF TRBV14*01 TRBJ1-2*01 16.0 519.0 CAVNSGNTPLVF_CASSQVNNPGDGYTF 31 4661 EBNA3A-158-166 EBV 0.4 444 NEG 167 4494 9 EBV EBNA3A QAKWRLQTL effector memory T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-B*08:01 B2M MHCI -7516 chip0423_615677 10.56 10.8 Chip2 T1D_4 T1D TGTGCCAGCAGCTTAGCGGTCGGAGAAGGGCCCCAGCATTTT CASSLAVGEGPQHF TRBV7-9*01 TRBJ1-5*01 12.0 562.0 _CASSLAVGEGPQHF 113 4120 BZLF1-190-197 EBV 0.81 2156 BZLF1-190-197 193 3927 9 EBV BZLF1 RAKFKQLL effector memory T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-B*08:01 B2M MHCI -7517 chip0423_843985 8.45 11.33 Chip2 T1D_5 T1D TGTGCCAGCAGCGCTCTCGGGGGGGTTGACAATGAGCAGTTCTTC CASSALGGVDNEQFF TRBV7-9*01 TRBJ2-1*01 15.0 1325.0 _CASSALGGVDNEQFF 1 4617 BZLF1-190-197 EBV 0.52 2156 NEG 166 4451 6 EBV BZLF1 RAKFKQLL central memory T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-B*08:01 B2M MHCI -7518 chip0423_111134 8.66 7.95 Chip2 healthy_4 healthy TGCATCGTCAGAGAGACTAACAATGACATGCGCTTT CIVRETNNDMRF TRAV26-1*01 TRAJ43*01 8.0 517.0 TGCGCCAGCAGCCAAACAGGTTCCCTGAACACTGAAGCTTTCTTT CASSQTGSLNTEAFF TRBV4-1*01 TRBJ1-1*01 13.0 508.0 CIVRETNNDMRF_CASSQTGSLNTEAFF 2 8400 BZLF1-190-197 EBV 0.67 2156 NEG 156 8244 8 EBV BZLF1 RAKFKQLL effector memory T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-B*08:01 B2M MHCI -7519 chip0423_83602 -3.66 9.35 Chip2 T1D_6 T1D TGTGCAATGAGCCTCTCTAACTTTGGGCTTGAGTGTTTATCCTTT CAMSLSNFGLECLSF TRAV12-3*01 TRAJ48*01 80.0 2989.0 TGTGCCAGCAGTGAAACGACGGGATATCCACGAGCAGTACTTC CASSETT??gDIHEQYF TRBV25-1*01 TRBJ2-7*01 7.0 198.0 CAMSLSNFGLECLSF_CASSETT??gDIHEQYF 1 7066 PGT-178 PGT 0.88 1480 PGT-178 176 6890 2 HomoSapiens PGT LLAGIGTVPI Naive T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*02:01 B2M MHCI -7520 chip0423_833597 15.54 12.59 Chip2 T1D_5 T1D TGTGCAGCGGCGGAAACCTCCTACGACAAGGTGATATTT CAAAETSYDKVIF TRAV13-1*01 TRAJ50*01 27.0 2017.0 TGTGCCAGCCAACTAGCGGGAGGCACCGGGGAGCTGTTTTTT CASQLAGGTGELFF TRBV24-1*01 TRBJ2-2*01 13.0 628.0 CAAAETSYDKVIF_CASQLAGGTGELFF 131 1670 BZLF1-190-197 EBV 0.64 2156 NEG 163 1507 12 EBV BZLF1 RAKFKQLL effector T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-B*08:01 B2M MHCI -7521 chip0423_563821 10.6 11.93 Chip2 T1D_5 T1D TGTGCAGCGGCGGAAACCTCCTACGACAAGGTGATATTT CAAAETSYDKVIF TRAV13-1*01 TRAJ50*01 50.0 4416.0 TGTGCCAGCCAACTAGCGGGAGGCACCGGGGAGCTGTTTTTT CASQLAGGTGELFF TRBV24-1*01 TRBJ2-2*01 28.0 1566.0 CAAAETSYDKVIF_CASQLAGGTGELFF 131 3068 BZLF1-190-197 EBV 1.0 2156 NEG 177 2891 9 EBV BZLF1 RAKFKQLL effector memory T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-B*08:01 B2M MHCI -7522 chip0423_559002 -2.44 10.33 Chip2 T1D_5 T1D TGTGCAGCATCCGGGGGCAATGACATGCGCTTT CAASGGNDMRF TRAV29/DV5*01 TRAJ43*01 2.0 141.0 TGTGCCAGCAGCTTTTCTAGCGGGCCCTACAATGAGCAGTTCTTC CASSFSSGPYNEQFF TRBV7-9*01 TRBJ2-1*01 13.0 771.0 CAASGGNDMRF_CASSFSSGPYNEQFF 1 6669 ZNT8-YAK-9 ZNT8 0.48 59 ZNT8-YAK-9 160 6509 3 HomoSapiens ZNT8 YAKWKLCSA Naive T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-B*08:01 B2M MHCI -7523 chip0423_171914 12.2 7.34 Chip2 T1D_5 T1D TTTGCCAGCAGCTTTTTGGGACAGCGCCGATCACCCCTCCACTTT FASSFLGQRRSPLHF TRAV36/DV7*01 TRAJ11*01 2.0 4.0 TGTGCCAGCAGCTTTTTGGGACAGGGCCGATCACCCCTCCACTTT CASSFLGQGRSPLHF TRBV7-9*01 TRBJ1-6*01 42.0 1809.0 FASSFLGQRRSPLHF_CASSFLGQGRSPLHF 1 3092 BZLF1-190-197 EBV 0.57 2156 NEG 184 2908 10 EBV BZLF1 RAKFKQLL effector memory T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-B*08:01 B2M MHCI -7524 chip0423_158348 8.31 7.99 Chip2 T1D_4 T1D _ 6746 9842 EBNA3A-158-166 EBV 0.74 444 EBNA3A-158-166 168 9674 8 EBV EBNA3A QAKWRLQTL effector memory T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-B*08:01 B2M MHCI -7525 chip0423_66014 15.01 10.37 Chip2 T1D_6 T1D TGCATCCTCCCACTTGCTGGTGGTACTAGCTATGGAAAGCTGACATTT CILPLAGGTSYGKLTF TRAV26-2*01 TRAJ52*01 36.0 1469.0 TGTGCCAGCAGCTTGGGACAGGCCTACGAGCAGTACTTC CASSLGQAYEQYF TRBV7-8*01 TRBJ2-7*01 12.0 717.0 CILPLAGGTSYGKLTF_CASSLGQAYEQYF 308 5333 EBNA3A-193-201 EBV 0.59 1022 EBNA3A-193-201 190 5143 12 EBV EBNA3A FLRGRAYGL effector T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-B*08:01 B2M MHCI -7526 chip0423_459885 11.16 12.96 Chip2 T1D_4 T1D _ 6746 3158 EBNA3A-193-201 EBV 0.68 1022 NEG 164 2994 11 EBV EBNA3A FLRGRAYGL effector T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-B*08:01 B2M MHCI -7527 chip0423_50634 -0.63 9.44 Chip2 T1D_5 T1D TGTGCAGGGCCCATGGCTCTAGCAACACAGGCAAACTAATCTTT CAGPMALg?cNTGKLIF TRAV25*01 TRAJ37*01 1.0 33.0 TGTGCCAGCAGTTTATCGTTCCCCACTGAAGCTTTCTTT CASSLSFPTEAFF TRBV27*01 TRBJ1-1*01 29.0 1858.0 CAGPMALg?cNTGKLIF_CASSLSFPTEAFF 1 5418 G6PC2-LTS-10 IGRP 0.79 59 G6PC2-LTS-10 169 5249 4 HomoSapiens G6PC2 LTSLTILQLY Naive T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*01:01 B2M MHCI -7528 chip0423_715501 -4.15 8.9 Chip2 T1D_4 T1D TGCAGTGCTAAGGAGACTCTCTATGCGGGGGGCGACACCTTC CSAKETLYAGGDTF TRBV20-1*01 TRBJ1-2*01 16.0 1353.0 _CSAKETLYAGGDTF 1 5319 PGT-178 PGT 0.64 1480 PGT-178 147 5172 2 HomoSapiens PGT LLAGIGTVPI Naive T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*02:01 B2M MHCI -7529 chip0423_342176 -0.67 7.47 Chip2 T1D_5 T1D TGTGCCAGCAGCGCGACGGTGAGCTCCTACGAGCAGTACTTC CASSATVSSYEQYF TRBV9*01 TRBJ2-7*01 52.0 3825.0 _CASSATVSSYEQYF 1 7192 GAD2-EVK-10 GAD65 0.46 1 NEG 153 7039 3 HomoSapiens GAD2 EVKEKGMAAL Naive T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-B*08:01 B2M MHCI -7530 chip0423_336166 7.43 9.54 Chip2 T1D_4 T1D _ 6746 8797 GAD65-110-118 GAD65 0.73 4 GAD65-110-118 192 8605 8 HomoSapiens GAD65 FLQDVMNIL effector memory T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*02:01 B2M MHCI -7531 chip0423_553158 -1.83 8.2 Chip2 T1D_5 T1D TGTGCTGTTGACACCGGTAACCAGTTCTATTTT CAVDTGNQFYF TRAV12-1*01,TRAV21*01 TRAJ49*01 11.0 1618.0 CAVDTGNQFYF_ 1 7522 GAD2-VSA-10 GAD65 0.4 21 NEG 163 7359 3 HomoSapiens GAD2 VSATAGTTVY Naive T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*01:01 B2M MHCI -7532 chip0423_228407 15.89 11.28 Chip2 T1D_5 T1D TGTGCAATGAGAGAGGGCGAGGGTGGAGGCTTCAAAACTATCTTT CAMREGEGGGFKTIF TRAV14/DV4*01 TRAJ9*01 56.0 1966.0 TGTGCCAGCAGCTCCGGACTAGCGGGGGGCTCTCACACCGGGGAGCTGTTTTTT CASSSGLAGGSHTGELFF TRBV11-1*01 TRBJ2-2*01 63.0 2967.0 CAMREGEGGGFKTIF_CASSSGLAGGSHTGELFF 10 2205 BZLF1-190-197 EBV 0.4 2156 NEG 187 2018 12 EBV BZLF1 RAKFKQLL effector T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-B*08:01 B2M MHCI -7533 chip0423_486300 12.6 10.95 Chip2 T1D_5 T1D TGCATCGTCAGGGAAACCTCCTACGACAAGGTGATATTT CIVRETSYDKVIF TRAV26-1*01 TRAJ50*01 1.0 55.0 TGTGCCAGCAGTCAGCCCGGACGCGCTAACGAGCAGTTCTTC CASSQPGRANEQFF TRBV6-1*01 TRBJ2-1*01 5.0 219.0 CIVRETSYDKVIF_CASSQPGRANEQFF 1 4783 BZLF1-190-197 EBV 0.55 2156 NEG 178 4605 9 EBV BZLF1 RAKFKQLL effector memory T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-B*08:01 B2M MHCI -7534 chip0423_135873 10.15 9.04 Chip2 T1D_5 T1D TGTGCAGCAAGTGAAACCTCCTACGACAAGGTGATATTT CAASETSYDKVIF TRAV13-1*01 TRAJ50*01 21.0 2027.0 TGTGCCAGCAGCTTATTAGGGTCCTCTGGAAACACCATATATTTT CASSLLGSSGNTIYF TRBV7-9*01 TRBJ1-3*01 13.0 628.0 CAASETSYDKVIF_CASSLLGSSGNTIYF 2 5428 BZLF1-190-197 EBV 0.91 2156 NEG 149 5279 8 EBV BZLF1 RAKFKQLL effector memory T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-B*08:01 B2M MHCI -7535 chip0423_15214 10.67 6.77 Chip2 T1D_6 T1D _ 6746 6036 EBV-LMP2-FLY EBV 0.67 355 NEG 154 5882 10 EBV LMP2 FLYALALLL effector memory T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*02:01 B2M MHCI -7536 chip0423_523582 11.36 6.77 Chip2 T1D_6 T1D TGCATCCTCCCACTTGCTGGTGGTACTAGCTATGGAAAGCTGACATTT CILPLAGGTSYGKLTF TRAV26-2*01 TRAJ52*01 91.0 4645.0 TGTGCCAGCAGCTTGGGACAGGCCTACGAGCAGTACTTC CASSLGQAYEQYF TRBV7-8*01 TRBJ2-7*01 32.0 1915.0 CILPLAGGTSYGKLTF_CASSLGQAYEQYF 308 6193 EBNA3A-193-201 EBV 0.81 1022 EBNA3A-193-201 220 5973 10 EBV EBNA3A FLRGRAYGL effector memory T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-B*08:01 B2M MHCI -7537 chip0423_508595 12.44 6.33 Chip2 T1D_4 T1D TGCATCCTGCCTCTTGCTGCTCGTACTAGCTCTGTACAGCTGACATCT CILPLAARTSSVQLTS TRAV26-2*01 TRAJ52*01 3.0 289.0 TGTGCAGCTGTGTTCCGGAATAACAATGCCAGACTCATGTTT CAAVFRNNNARLMF TRAV25*01 TRAJ31*01 3.0 199.0 0.43 TGTGCCAGCAGCTTAGGGCAAGCCTACGAGCAGTACTTC CASSLGQAYEQYF TRBV7-8*01 TRBJ2-7*01 22.0 1241.0 CILPLAARTSSVQLTS_CASSLGQAYEQYF 1 4965 EBNA3A-193-201 EBV 0.75 1022 NEG 197 4768 10 EBV EBNA3A FLRGRAYGL effector memory T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-B*08:01 B2M MHCI -7538 chip0423_786789 -0.69 6.65 Chip2 healthy_3 healthy TGTGCCGTGGGATAACAATGCCAGACTCATGTTT CAVG*ca??atARLMF TRAV12-2*01 TRAJ31*01 1.0 11.0 TGTGCCAGCAGCTACCAGGAGGGAACGAGGTCCTACAATGAGCAGTTCTTC CASSYQEGTRSYNEQFF TRBV5-6*01 TRBJ2-1*01 26.0 1082.0 CAVG*ca??atARLMF_CASSYQEGTRSYNEQFF 1 7296 PGT-178 PGT 0.5 1480 NEG 186 7110 3 HomoSapiens PGT LLAGIGTVPI Naive T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*02:01 B2M MHCI -7539 chip0423_527950 -1.62 7.47 Chip2 T1D_6 T1D TGTGCCACAGGGGGCTCTGGAAACACCATATATTTT CATGGSGNTIYF TRBV7-9*01 TRBJ1-3*01 14.0 676.0 _CATGGSGNTIYF 1 7222 ZNT8-16-24 ZNT8 0.64 39 NEG 169 7053 3 HomoSapiens ZNT8 KMYAFTLES Naive T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*02:01 B2M MHCI -7540 chip0423_340023 15.83 10.12 Chip2 T1D_6 T1D TGTGCCAGCAGCTTGGGACAGGCCTACGAGCAGTACTTC CASSLGQAYEQYF TRBV7-8*01 TRBJ2-7*01 53.0 3312.0 _CASSLGQAYEQYF 175 4340 EBNA3A-193-201 EBV 0.88 1022 EBNA3A-193-201 182 4158 12 EBV EBNA3A FLRGRAYGL effector T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-B*08:01 B2M MHCI -7541 chip0423_733665 -3.18 8.56 Chip2 T1D_6 T1D TGTGCCAGCAGTGGACAGGGGAATCAGCCCCAGCATTTT CASSGQGNQPQHF TRBV6-2*01,TRBV6-3*01 TRBJ1-5*01 25.0 865.0 _CASSGQGNQPQHF 1 7491 PREINS-6-14 INS 0.59 20 NEG 184 7307 2 HomoSapiens PREINS RLLPLLALL Naive T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*02:01 B2M MHCI -7542 chip0423_276605 -1.6 8.21 Chip2 T1D_6 T1D TGCGGCCCTGACTTTGGAAATGAGAACTTAACCTTT CGPDFGNENLTF TRAV30*01 TRAJ48*01 9.0 345.0 CGPDFGNENLTF_ 1 7566 MART1-A28L MART1 0.79 84 MART1-A28L 155 7411 3 HomoSapiens MART1 ALGIGILTV Naive T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*02:01 B2M MHCI -7543 chip0423_152045 11.33 7.35 Chip2 T1D_4 T1D TGTGCCAGCAGCTTAGTGGTTAGCCACGGGGAGCTGTTTTTT CASSLVVSHGELFF TRBV7-2*01 TRBJ2-2*01 44.0 2955.0 _CASSLVVSHGELFF 4 5818 BZLF1-190-197 EBV 0.54 2156 NEG 203 5615 10 EBV BZLF1 RAKFKQLL effector memory T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-B*08:01 B2M MHCI -7544 chip0423_674197 -3.5 11.9 Chip2 T1D_4 T1D TGTGCTGGGCATCGAACACCGGTAACCCGTTCTATTTT CAGHRTc?cGNPFYF TRAV35*01 TRAJ49*01 21.0 2010.0 CAGHRTc?cGNPFYF_ 1 5618 PGT-178 PGT 0.58 1480 PGT-178 164 5454 1 HomoSapiens PGT LLAGIGTVPI Naive T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*02:01 B2M MHCI -7545 chip0423_383462 13.54 8.74 Chip2 T1D_4 T1D CGCATCGTCAGAGAGGGAGGAGGTGCTGACGGACTCACCTTT RIVREGGGADGLTF TRAV26-1*01 TRAJ45*01 14.0 1167.0 TGTGCCAGCAGCTTAGCGGTCGGAGAAGGGCCCCAGCATTTT CASSLAVGEGPQHF TRBV7-9*01 TRBJ1-5*01 8.0 405.0 RIVREGGGADGLTF_CASSLAVGEGPQHF 3 3231 BZLF1-190-197 EBV 0.85 2156 BZLF1-190-197 186 3045 10 EBV BZLF1 RAKFKQLL effector memory T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-B*08:01 B2M MHCI -7546 chip0423_596931 -0.56 10.36 Chip2 healthy_4 healthy TGTGCCAGCAGTCCGGACAGCCAAGAGACCCAGTACTTC CASSPDSQETQYF TRBV12-3*01,TRBV12-4*01 TRBJ2-5*01 17.0 1539.0 _CASSPDSQETQYF 1 8031 GFAP-214-222 GFAP 0.5 6 NEG 148 7883 3 HomoSapiens GFAP QLARQQVHV Naive T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*02:01 B2M MHCI -7547 chip0423_307695 4.93 12.05 Chip2 healthy_4 healthy _ 6746 3019 M1 FLU 1.0 1250 NEG 170 2849 6 InfluenzaA M1 GILGFVFTL central memory T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*02:01 B2M MHCI -7548 chip0423_428806 -4.31 8.04 Chip2 T1D_6 T1D TGTGCTCTGAGTGAGCCATATGGAGGAAGCCAAGGAAATCTCATCTTT CALSEPYGGSQGNLIF TRAV19*01 TRAJ42*01 68.0 2363.0 TGCGCCAGCAGTTTTCGGGGGGGGGCCTACGAGCAGTACTTC CASSFRGGAYEQYF TRBV28*01 TRBJ2-7*01 13.0 1080.0 CALSEPYGGSQGNLIF_CASSFRGGAYEQYF 1 5518 ZNT8-YAK-9 ZNT8 0.8 59 NEG 132 5386 2 HomoSapiens ZNT8 YAKWKLCSA Naive T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-B*08:01 B2M MHCI -7549 chip0423_248262 10.81 9.15 Chip2 healthy_4 healthy TGTGCCAGCCGCTTATTCTCTTTCGGGACAGACTTAATCTGGGGCCAACGTCCTGACTTTC CASRLFSFGT??gT*SGANVLTF TRBV7-8*01 TRBJ2-6*01 5.0 126.0 _CASRLFSFGT??gT*SGANVLTF 1 4367 BZLF1-190-197 EBV 0.6 2156 NEG 155 4212 10 EBV BZLF1 RAKFKQLL effector memory T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-B*08:01 B2M MHCI -7550 chip0423_113808 10.4 11.49 Chip2 T1D_4 T1D TGTGCCAGCAGCTTAGTCAGGCCCGGGGACACTGAAGCTTTCTTT CASSLVRPGDTEAFF TRBV7-9*01 TRBJ1-1*01 13.0 214.0 _CASSLVRPGDTEAFF 1 3926 BZLF1-190-197 EBV 0.88 2156 BZLF1-190-197 173 3753 9 EBV BZLF1 RAKFKQLL effector memory T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-B*08:01 B2M MHCI -7551 chip0423_828071 12.3 7.53 Chip2 T1D_4 T1D TGTGCCAGCAGCCAAGTCAACAACCCGGGGGATGGCTACACCTTC CASSQVNNPGDGYTF TRBV14*01 TRBJ1-2*01 25.0 544.0 _CASSQVNNPGDGYTF 94 4638 EBNA3A-158-166 EBV 0.58 444 EBNA3A-158-166 224 4414 10 EBV EBNA3A QAKWRLQTL effector memory T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-B*08:01 B2M MHCI -7552 chip0423_32629 -1.57 7.23 Chip2 T1D_4 T1D TGTGCCAGCAGGGGAGGTGAGGCGTACAATGAGCAGTTCTTC CASRGGEAYNEQFF TRBV7-9*01 TRBJ2-1*01 39.0 1992.0 _CASRGGEAYNEQFF 1 9987 PGT-178 PGT 0.48 1480 NEG 145 9842 3 HomoSapiens PGT LLAGIGTVPI Naive T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*02:01 B2M MHCI -7553 chip0423_428940 14.14 10.65 Chip2 T1D_5 T1D TGTGCAGCGGCGGAAACCTCCTACGACAAGGTGATATTT CAAAETSYDKVIF TRAV13-1*01 TRAJ50*01 33.0 4250.0 TGTGCCAGCCAACTAGCGGGAGGCACCGGGGAGCTGTTTTTT CASQLAGGTGELFF TRBV24-1*01 TRBJ2-2*01 57.0 3433.0 CAAAETSYDKVIF_CASQLAGGTGELFF 131 3953 BZLF1-190-197 EBV 0.75 2156 NEG 158 3795 12 EBV BZLF1 RAKFKQLL effector T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-B*08:01 B2M MHCI -7554 chip0423_390794 -3.83 10.06 Chip2 T1D_6 T1D TGTGCTGTGAGTGCTGTAGCCTGGGTGTAAAGATTATCTTC CAVSAVgc?LGVKIIF TRAV8-6*01 TRAJ23*01 28.0 1770.0 TGTGCCAGTAGTTGGGCCAATCCGCCCCAGCATTTT CASSWANPPQHF TRBV19*01 TRBJ1-5*01 36.0 2453.0 CAVSAVgc?LGVKIIF_CASSWANPPQHF 1 5773 M1 FLU 0.53 1250 NEG 142 5631 2 InfluenzaA M1 GILGFVFTL Naive T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*02:01 B2M MHCI -7555 chip0423_389445 11.12 7.64 Chip2 T1D_5 T1D TGTGCCAGCCTGCATCCGCCGACTAACACTGAAGCCTTCTTT CASLHPPTNTEAFF TRAV9-2*01 TRAJ40*01 3.0 9.0 TGTGCCAGCCTGCATACGCAGACTAACACTGAAGCTTTCTTT CASLHTQTNTEAFF TRBV12-3*01,TRBV12-4*01 TRBJ1-1*01 49.0 2235.0 CASLHPPTNTEAFF_CASLHTQTNTEAFF 1 6570 BZLF1-190-197 EBV 0.44 2156 NEG 178 6392 10 EBV BZLF1 RAKFKQLL effector memory T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-B*08:01 B2M MHCI -7556 chip0423_837318 -3.41 13.48 Chip2 T1D_6 T1D TGTGCCGTGGCCAACCACCAGTTCTATTTT CAVANHQFYF TRAV12-2*01 TRAJ49*01 1.0 17.0 TGTGCTCTGAAGACCAGGGAGGCAAGCTTGTCTTC CALKTag?GGKLVF TRAV9-2*01 TRAJ23*01 4.0 185.0 0.8 TGCAGTGCTTTGGGGGGGGGGCGGACCGGGGAGCTGTTTTTT CSALGGGRTGELFF TRBV20-1*01 TRBJ2-2*01 12.0 964.0 CAVANHQFYF_CSALGGGRTGELFF 1 3463 GAD65-114-122 GAD65 0.77 63 GAD65-114-122 158 3305 1 HomoSapiens GAD65 VMNILLQYV Naive T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*02:01 B2M MHCI -7557 chip0423_112134 5.3 10.01 Chip2 T1D_4 T1D TGTGCTCCGGCCGCGGTGGTCCAAGCTGCAGGCAACAAGCTAACTTTT CAPAAVVQAAGNKLTF TRAV17*01 TRAJ17*01 61.0 1908.0 TGTGCCAGCAGTAAACAGGGTGGAGGGTATGGCTACACCTTC CASSKQGGGYGYTF TRBV6-1*01 TRBJ1-2*01 46.0 1456.0 CAPAAVVQAAGNKLTF_CASSKQGGGYGYTF 1 7834 EBV-LMP2-FLY EBV 1.0 355 NEG 180 7654 6 EBV LMP2 FLYALALLL central memory T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*02:01 B2M MHCI -7558 chip0423_600871 7.0 12.31 Chip2 T1D_4 T1D TGCGCCAGCAGCTTGGAGCTGGGGCTTCCCTACGAGCAGTACTTC CASSLELGLPYEQYF TRBV5-1*01 TRBJ2-7*01 43.0 2742.0 _CASSLELGLPYEQYF 8 4682 EBNA3A-158-166 EBV 0.4 444 NEG 161 4521 7 EBV EBNA3A QAKWRLQTL transitional T cells between effector and memory populations PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-B*08:01 B2M MHCI -7559 chip0423_30453 -2.74 9.43 Chip2 T1D_4 T1D TGTGCTGTGGAGTAAGAATTCAGGGAGCCCAGAAGCTGGTATTT CAVE*EFa?gGAQKLVF TRAV36/DV7*01 TRAJ54*01 1.0 21.0 TGTGCCAGCAGTGAAATGTTCCCAGGGACCCAGTACTTC CASSEMFPGTQYF TRBV6-1*01 TRBJ2-5*01 10.0 290.0 CAVE*EFa?gGAQKLVF_CASSEMFPGTQYF 1 7019 ZNT8-YAK-9 ZNT8 0.5 59 NEG 169 6850 2 HomoSapiens ZNT8 YAKWKLCSA Naive T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-B*08:01 B2M MHCI -7560 chip0423_763980 13.17 8.18 Chip2 T1D_4 T1D TGCATCGTCCGAGAGGGAGGTGGTGCTGCCGGTCTCACCTTT CIVREGGGAAGLTF TRAV26-1*01 TRAJ45*01 11.0 646.0 TGTGCCAGCAGCTTAGCGGTCGGAGAAGGGCCCCAGCATTTT CASSLAVGEGPQHF TRBV7-9*01 TRBJ1-5*01 69.0 2891.0 CIVREGGGAAGLTF_CASSLAVGEGPQHF 2 3540 BZLF1-190-197 EBV 0.82 2156 BZLF1-190-197 183 3357 10 EBV BZLF1 RAKFKQLL effector memory T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-B*08:01 B2M MHCI -7561 chip0423_717945 5.68 12.45 Chip2 healthy_3 healthy _ 6746 6062 NP44-52 FLU 0.92 474 NEG 159 5903 7 InfluenzaA NP CTELKLSDY transitional T cells between effector and memory populations PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*01:01 B2M MHCI -7562 chip0423_449749 8.52 9.14 Chip2 T1D_6 T1D TGCAGCGCCGGCAGGGACGGGACTAATGAAAAACTGTTTTTT CSAGRDGTNEKLFF TRBV29-1*01 TRBJ1-4*01 75.0 2589.0 _CSAGRDGTNEKLFF 159 6631 EBV-BLMF1 EBV 0.56 2531 NEG 158 6473 8 EBV BLMF1 GLCTLVAML effector memory T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*02:01 B2M MHCI -7563 chip0423_115026 -2.34 7.62 Chip2 T1D_6 T1D TGTGCCGTGAATGAGAAGGATAACTATGGTCAGAATTTTGTCTTT CAVNEKDNYGQNFVF TRAV8-1*01 TRAJ26*01 58.0 2036.0 TGTGCCAGCAGTCCGAGGGACCGACCCTACGAGCAGTACTTC CASSPRDRPYEQYF TRBV7-9*01 TRBJ2-7*01 4.0 56.0 CAVNEKDNYGQNFVF_CASSPRDRPYEQYF 1 4942 INS-GSH-9 INS 0.79 19 INS-GSH-9 153 4789 3 HomoSapiens INS GSHLVEALY Naive T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*01:01 B2M MHCI -7564 chip0423_304923 12.48 7.4 Chip2 T1D_5 T1D TGTGCTAGTGGTCCGGACATATCCTACTCCTACGAGCAGTACTTC CASGPDISYSYEQYF TRBV12-5*01 TRBJ2-7*01 18.0 993.0 _CASGPDISYSYEQYF 10 4130 BZLF1-190-197 EBV 0.89 2156 BZLF1-190-197 168 3962 10 EBV BZLF1 RAKFKQLL effector memory T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-B*08:01 B2M MHCI -7565 chip0423_857869 -3.42 12.15 Chip2 T1D_5 T1D _ 6746 4624 IAPP-STN-9 IAPP 0.56 48 IAPP-STN-9 139 4485 1 HomoSapiens IAPP STNVGSNTY Naive T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*01:01 B2M MHCI -7566 chip0423_770388 15.13 10.26 Chip2 T1D_5 T1D TGTGCAGCGGCGGAAACCTCCTACGACAAGGTGATATTT CAAAETSYDKVIF TRAV13-1*01 TRAJ50*01 25.0 1942.0 TGTGCCAGCCAACTAGCGGGAGGCACCGGGGAGCTGTTTTTT CASQLAGGTGELFF TRBV24-1*01 TRBJ2-2*01 35.0 1810.0 CAAAETSYDKVIF_CASQLAGGTGELFF 131 2307 BZLF1-190-197 EBV 0.56 2156 NEG 163 2144 12 EBV BZLF1 RAKFKQLL effector T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-B*08:01 B2M MHCI -7567 chip0423_396246 6.73 12.43 Chip2 T1D_6 T1D TGTGCTGTAGGGACCATGGCTCTAGCAACACAGGCAAACTAATCTTT CAVGTMAct?SNTGKLIF TRAV8-3*01 TRAJ37*01 45.0 1740.0 CAVGTMAct?SNTGKLIF_ 3 7402 NP380-388 FLU 0.56 60 NEG 178 7224 7 InfluenzaA NP ELRSRYWAI transitional T cells between effector and memory populations PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-B*08:01 B2M MHCI -7568 chip0423_105002 5.18 9.51 Chip2 T1D_5 T1D TGTGCAGCAACGGAAACCTCCTACGACAAGGTGATATTT CAATETSYDKVIF TRAV13-1*01 TRAJ50*01 21.0 2113.0 TGTGCCAGCAGTACCGGGACTAGCGCAGACGGGGAGCTGTTTTTT CASSTGTSADGELFF TRBV12-3*01,TRBV12-4*01 TRBJ2-2*01 35.0 1883.0 CAATETSYDKVIF_CASSTGTSADGELFF 1 4260 BZLF1-190-197 EBV 0.57 2156 NEG 170 4090 6 EBV BZLF1 RAKFKQLL central memory T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-B*08:01 B2M MHCI -7569 chip0423_507786 -0.55 7.41 Chip2 healthy_4 healthy _ 6746 7094 Pol173-181 HIV 0.9 8 NEG 145 6949 3 HIV-1 Pol GPKVKQWPL Naive T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-B*08:01 B2M MHCI -7570 chip0423_470762 7.12 12.58 Chip2 T1D_6 T1D TGTGCCTCCCAAGGAGGAAGCCAAGGAAATCTCATCTTT CASQGGSQGNLIF TRAV20*01 TRAJ42*01 29.0 2051.0 TGTGCCAGCAGCTTAGGAGGACAGACAGAGACCCAGTACTTC CASSLGGQTETQYF TRBV13*01 TRBJ2-5*01 9.0 326.0 CASQGGSQGNLIF_CASSLGGQTETQYF 13 5641 ROTA-VP6 ROTA 0.62 47 ROTA-VP6 171 5470 7 RotavirusA VP6 TLLANVTAV transitional T cells between effector and memory populations PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*02:01 B2M MHCI -7571 chip0423_579630 10.3 8.66 Chip2 T1D_5 T1D TGTGCCGCAGGGGAAACCTCCTACGACAAGGTGATATTT CAAGETSYDKVIF TRAV13-1*01 TRAJ50*01 24.0 1375.0 TGTGCCAGCAGCCCGCTGGGGGAAGGGGAAAAACTGTTTTTT CASSPLGEGEKLFF TRBV7-9*01 TRBJ1-4*01 32.0 1178.0 CAAGETSYDKVIF_CASSPLGEGEKLFF 1 3420 BZLF1-190-197 EBV 0.85 2156 NEG 169 3251 8 EBV BZLF1 RAKFKQLL effector memory T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-B*08:01 B2M MHCI -7572 chip0423_177699 10.68 8.3 Chip2 healthy_4 healthy TGCAGTGCTAGAGACGAGACAGGGAATGGCTACACCTTC CSARDETGNGYTF TRBV20-1*01 TRBJ1-2*01 36.0 2115.0 _CSARDETGNGYTF 6 4763 EBV-BLMF1 EBV 0.75 2531 NEG 165 4598 10 EBV BLMF1 GLCTLVAML effector memory T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*02:01 B2M MHCI -7573 chip0423_763082 -4.26 7.72 Chip2 T1D_4 T1D TGCGGCACAGCGACGGAAGACGACTACAAGCTCAGCTTT CGTATEDDYKLSF TRAV30*01 TRAJ20*01 32.0 2001.0 TGTGCAGAGAATATAAAGCACGAATTCTGGGGGTTACCAGAAAGTCACCTTT CAENIKHEtt??ctGGYQKVTF TRAV13-2*01 TRAJ13*01 78.0 1678.0 0.53 TGTGCCAGCAGCCATCCCTCGGGGCTCACAGATACGCAGTATTTT CASSHPSGLTDTQYF TRBV7-9*01 TRBJ2-3*01 8.0 379.0 CGTATEDDYKLSF_CASSHPSGLTDTQYF 1 6618 GP160-311-320 HIV 0.5 109 NEG 160 6458 2 HIV-1 GP160 RGPGRAFVTI Naive T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*02:01 B2M MHCI -7574 chip0423_466853 16.27 11.55 Chip2 healthy_3 healthy TGTGCCGTGGACACCATCGACAGAGGCTCAACCCTGGGGAGGCTATACTTT CAVDTIDRGSTLGRLYF TRAV39*01 TRAJ18*01 1.0 33.0 CAVDTIDRGSTLGRLYF_ 5 2549 M1 FLU 0.53 1250 M1 174 2375 12 InfluenzaA M1 GILGFVFTL effector T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*02:01 B2M MHCI -7575 chip0423_876996 11.24 9.74 Chip2 T1D_5 T1D TGTCCCGCCACGGAAACCTCCTACGACAAGGTGATATTT CPATETSYDKVIF TRAV13-1*01 TRAJ50*01 10.0 532.0 TGTGCCAGCAGCCCTCTTGGGAGCAATGAAAAACTGTTTTTT CASSPLGSNEKLFF TRBV7-9*01 TRBJ1-4*01 104.0 4233.0 CPATETSYDKVIF_CASSPLGSNEKLFF 1 3815 BZLF1-190-197 EBV 0.67 2156 NEG 163 3652 9 EBV BZLF1 RAKFKQLL effector memory T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-B*08:01 B2M MHCI -7576 chip0423_650873 -0.9 6.57 Chip2 T1D_5 T1D TGTGCAGGCCTCTTGATTCAGGGCGGATCTGAAGAGCTGGTCTTT CAGLLIQGGSEELVF TRAV25*01 TRAJ57*01 29.0 1502.0 TGTGCCAGCAGTGCCCGGGGGCTCTACTACGAGCAGTACTTC CASSARGLYYEQYF TRBV6-1*01 TRBJ2-7*01 8.0 348.0 CAGLLIQGGSEELVF_CASSARGLYYEQYF 1 9559 GAD2-YAF-9 GAD65 0.56 6 GAD2-YAF-9 185 9374 3 HomoSapiens GAD2 YAFLHATDL Naive T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-B*08:01 B2M MHCI -7577 chip0423_555879 15.1 9.89 Chip2 T1D_6 T1D TGTGCTACGGCGGGGGCTTCAAGATACAGCACCCTCACCTTT CATAGASRYSTLTF TRAV17*01 TRAJ11*01 1.0 32.0 TGTGCCAGCAGCGTTAGCGGGGCCCCCTACGAGCAGTACTTC CASSVSGAPYEQYF TRBV9*01 TRBJ2-7*01 23.0 1392.0 CATAGASRYSTLTF_CASSVSGAPYEQYF 1 3194 EBNA3A-193-201 EBV 0.4 1022 NEG 176 3018 12 EBV EBNA3A FLRGRAYGL effector T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-B*08:01 B2M MHCI -7578 chip0423_254952 12.31 7.25 Chip2 T1D_4 T1D TGTGCCAGCAGCTTAGCGGTCGGAGAAGGGCCCCAGCATTTT CASSLAVGEGPQHF TRBV7-9*01 TRBJ1-5*01 39.0 963.0 _CASSLAVGEGPQHF 113 4180 BZLF1-190-197 EBV 0.62 2156 NEG 230 3950 10 EBV BZLF1 RAKFKQLL effector memory T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-B*08:01 B2M MHCI -7579 chip0423_675074 9.66 7.44 Chip2 T1D_4 T1D TGTGCTGTGAGTGATGGAGAAGGAGCCCAGAAGCTGGTATTT CAVSDGEGAQKLVF TRAV8-6*01 TRAJ54*01 29.0 1762.0 TGTGCCAGCAGCTTAACGGTTCTGGCAGGTCCAAACACTGAAGCTTTCTTT CASSLTVLAGPNTEAFF TRBV7-3*01 TRBJ1-1*01 27.0 709.0 CAVSDGEGAQKLVF_CASSLTVLAGPNTEAFF 44 5232 BZLF1-190-197 EBV 0.96 2156 BZLF1-190-197 178 5054 10 EBV BZLF1 RAKFKQLL effector memory T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-B*08:01 B2M MHCI -7580 chip0423_243998 8.06 10.69 Chip2 healthy_4 healthy TGTGCCAGCAGCCAGACATTTCCGAACACCGGGGAGCTGTTTTTT CASSQTFPNTGELFF TRBV3-1*01 TRBJ2-2*01 57.0 2526.0 _CASSQTFPNTGELFF 12 6528 BZLF1-190-197 EBV 0.88 2156 NEG 166 6362 8 EBV BZLF1 RAKFKQLL effector memory T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-B*08:01 B2M MHCI -7581 chip0423_665460 8.78 11.18 Chip2 T1D_4 T1D _ 6746 4304 BZLF1-190-197 EBV 0.83 2156 NEG 159 4145 7 EBV BZLF1 RAKFKQLL transitional T cells between effector and memory populations PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-B*08:01 B2M MHCI -7582 chip0423_492874 12.91 7.65 Chip2 T1D_5 T1D TGCAGCGTCGGGACAGCCGATGGCTACACCTTC CSVGTADGYTF TRBV29-1*01 TRBJ1-2*01 64.0 6311.0 _CSVGTADGYTF 4 3592 BZLF1-190-197 EBV 0.53 2156 NEG 170 3422 10 EBV BZLF1 RAKFKQLL effector memory T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-B*08:01 B2M MHCI -7583 chip0423_261196 10.06 7.24 Chip2 T1D_4 T1D TGTGCCGTGGGTAGTGACATGCGCTTT CAVGSDMRF TRAV12-2*01 TRAJ43*01 1.0 11.0 TGTGCCAGCAGCTTAGCGGTCGGAGAAGGGCCCCAGCATTTT CASSLAVGEGPQHF TRBV7-9*01 TRBJ1-5*01 3.0 66.0 CAVGSDMRF_CASSLAVGEGPQHF 1 4127 BZLF1-190-197 EBV 0.84 2156 BZLF1-190-197 166 3961 10 EBV BZLF1 RAKFKQLL effector memory T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-B*08:01 B2M MHCI -7584 chip0423_242746 8.85 8.59 Chip2 T1D_4 T1D TGTGCTGTGAGTGATGGAGAAGGAGCCCAGAAGCTGGTATTT CAVSDGEGAQKLVF TRAV8-6*01 TRAJ54*01 40.0 1960.0 TGTGCCAGCAGCTTACCGGTTCTGGCAGGTCCAAACACTGCAGCTTTCTTT CASSLPVLAGPNTAAFF TRBV7-3*01 TRBJ1-1*01 18.0 917.0 CAVSDGEGAQKLVF_CASSLPVLAGPNTAAFF 1 5737 BZLF1-190-197 EBV 0.53 2156 BZLF1-190-197 163 5574 8 EBV BZLF1 RAKFKQLL effector memory T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-B*08:01 B2M MHCI -7585 chip0423_30735 12.11 6.54 Chip2 T1D_5 T1D TGTGCAGCAACGGAAACCTCCTACGACAAGGTGATATTT CAATETSYDKVIF TRAV13-1*01 TRAJ50*01 64.0 3994.0 TGTGCCAGCAGCCCTCTTGGGAGCAATGAAAAACTGTTTTTT CASSPLGSNEKLFF TRBV7-9*01 TRBJ1-4*01 16.0 468.0 CAATETSYDKVIF_CASSPLGSNEKLFF 25 6615 BZLF1-190-197 EBV 0.82 2156 NEG 181 6434 10 EBV BZLF1 RAKFKQLL effector memory T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-B*08:01 B2M MHCI -7586 chip0423_644537 16.37 11.42 Chip2 T1D_5 T1D TGCGCCAGCAGCCTCAGTTCGGGGGGCCGTGGCGAGCAGTACTTC CASSLSSGGRGEQYF TRBV4-1*01 TRBJ2-7*01 6.0 478.0 _CASSLSSGGRGEQYF 11 3532 BZLF1-190-197 EBV 0.75 2156 BZLF1-190-197 177 3355 12 EBV BZLF1 RAKFKQLL effector T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-B*08:01 B2M MHCI -7587 chip0423_387745 11.19 10.01 Chip2 T1D_5 T1D TGTGCAGCAACGGAAACCTCCTACGACAAGGTGATATTT CAATETSYDKVIF TRAV13-1*01 TRAJ50*01 18.0 1348.0 TGTGCCAGCAGTCCCCCGGGGAGAAATGAAAAACTGTTTTTT CASSPPGRNEKLFF TRBV12-3*01,TRBV12-4*01 TRBJ1-4*01 18.0 644.0 CAATETSYDKVIF_CASSPPGRNEKLFF 34 4070 BZLF1-190-197 EBV 0.5 2156 NEG 190 3880 9 EBV BZLF1 RAKFKQLL effector memory T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-B*08:01 B2M MHCI -7588 chip0423_188548 11.68 8.12 Chip2 T1D_5 T1D TGTGCCAGCAGTTTCACAGGGGTTCCCGGGGAGCTGTTTTTT CASSFTGVPGELFF TRBV12-3*01,TRBV12-4*01 TRBJ2-2*01 56.0 3061.0 _CASSFTGVPGELFF 1 3489 BZLF1-190-197 EBV 0.77 2156 NEG 191 3298 10 EBV BZLF1 RAKFKQLL effector memory T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-B*08:01 B2M MHCI -7589 chip0423_637373 9.58 10.97 Chip2 T1D_4 T1D TGTGCTGTGAGAGACACGACGTGGGATGACAAGATCATCTTT CAVRDTTWDDKIIF TRAV3*01 TRAJ30*01 23.0 1202.0 CAVRDTTWDDKIIF_ 4 5545 EBNA3A-193-201 EBV 0.9 1022 NEG 175 5370 9 EBV EBNA3A FLRGRAYGL effector memory T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-B*08:01 B2M MHCI -7590 chip0423_597755 -4.33 6.99 Chip2 tet_neg TGTGCCCGTTCTCCCTACGACAAGGTGATATTT CARSPYDKVIF TRAV24*01 TRAJ50*01 16.0 2049.0 TGTGCCAGCAGCACCCTCGAGCGGGGGTACTACAATGAGCAGTTCTTC CASSTLERGYYNEQFF TRBV7-2*01 TRBJ2-1*01 38.0 1740.0 CARSPYDKVIF_CASSTLERGYYNEQFF 1 4224 G6PC2-LTS-10 IGRP 0.62 59 NEG 150 4074 2 HomoSapiens G6PC2 LTSLTILQLY Naive T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*01:01 B2M MHCI -7591 chip0423_835377 6.13 13.3 Chip2 T1D_6 T1D TGTGCATCCTGGGCTGGCAACACAGGCCAACTAATCTTT CASWAGNTGQLIF TRAV23/DV6*01 TRAJ37*01 1.0 10.0 CASWAGNTGQLIF_ 1 4971 M1 FLU 0.55 1250 M1 171 4800 7 InfluenzaA M1 GILGFVFTL transitional T cells between effector and memory populations PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*02:01 B2M MHCI -7592 chip0423_29679 6.31 12.37 Chip2 T1D_6 T1D TGTGCCAGCAGCTTAGCGGGTCGTGAGGGTACGCAGTATTTT CASSLAGREGTQYF TRBV11-3*01,TRBV11-2*01 TRBJ2-3*01 4.0 137.0 _CASSLAGREGTQYF 13 6343 NP380-388 FLU 0.78 60 NP380-388 192 6151 7 InfluenzaA NP ELRSRYWAI transitional T cells between effector and memory populations PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-B*08:01 B2M MHCI -7593 chip0423_588332 -1.54 10.21 Chip2 T1D_5 T1D TGTGCCAGCAGCCGCGTCGGGACAGGGGTTTACGAGCAGTACTTC CASSRVGTGVYEQYF TRBV7-9*01 TRBJ2-7*01 34.0 1586.0 _CASSRVGTGVYEQYF 1 7782 GAD2-QQD-10 GAD65 0.66 7 GAD2-QQD-10 165 7617 3 HomoSapiens GAD2 QQDKHYDLSY Naive T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*01:01 B2M MHCI -7594 chip0423_76983 -4.1 8.78 Chip2 T1D_6 T1D TGTGCAATGAGGTCAGGCGCAGGCAACAAGCTAACTTTT CAMRSGAGNKLTF TRAV12-3*01 TRAJ17*01 60.0 4976.0 TGTGCTGTGGACCTATTTTCTGGTGGCTACAATAAGCTGATTTTT CAVDLFSGGYNKLIF TRAV2*01 TRAJ4*01 56.0 2200.0 0.33 TGTGCCATCAGTGAGGGACAGGGGCTCTTTTACGAGCAGTACTTC CAISEGQGLFYEQYF TRBV10-3*01 TRBJ2-7*01 42.0 2766.0 CAMRSGAGNKLTF_CAISEGQGLFYEQYF 1 6110 G6PC2-PTH-9 IGRP 0.82 7 G6PC2-PTH-9 159 5951 2 HomoSapiens G6PC2 PTHEEHLFY Naive T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*01:01 B2M MHCI -7595 chip0423_170232 5.36 10.02 Chip2 T1D_4 T1D TGTGCCGTGAACCGCTTCTTGGCCGCCAGAGGCTCAACCCTGGGGAGGCTATACTTT CAVNRFLAARGSTLGRLYF TRAV12-2*01,TRAV8-1*01 TRAJ18*01 2.0 32.0 TGCGCCAGCAGCCAAGAAGTCACAGATACGCAGTATTTT CASSQEVTDTQYF TRBV4-3*01 TRBJ2-3*01 110.0 5052.0 CAVNRFLAARGSTLGRLYF_CASSQEVTDTQYF 1 5478 EBV-LMP1-1 EBV 0.75 237 NEG 151 5327 6 EBV LMP1 YLLEMLWRL central memory T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*02:01 B2M MHCI -7596 chip0423_506305 -1.93 9.13 Chip2 T1D_5 T1D TGTGCTCTGAAGACCCCATATACTGGAGCCAATAGTAAGCTGACATTT CALKTPYTGANSKLTF TRAV19*01 TRAJ56*01 25.0 835.0 TGCGCCAGCACCGGCGACAGGGGGGTTGAAAAACTGTTTTTT CASTGDRGVEKLFF TRBV4-1*01 TRBJ1-4*01 40.0 1391.0 CALKTPYTGANSKLTF_CASTGDRGVEKLFF 1 8959 EBNA3A-158-166 EBV 0.74 444 EBNA3A-158-166 162 8797 3 EBV EBNA3A QAKWRLQTL Naive T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-B*08:01 B2M MHCI -7597 chip0423_483221 5.95 12.29 Chip2 T1D_6 T1D _ 6746 6672 M1 FLU 0.81 1250 M1 193 6479 7 InfluenzaA M1 GILGFVFTL transitional T cells between effector and memory populations PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*02:01 B2M MHCI -7598 chip0423_216147 11.36 8.71 Chip2 T1D_4 T1D TGTGCCAGCAGCTTAACGGTTCTGGCAGGTCCAAACACTGAAGCTTTCTTT CASSLTVLAGPNTEAFF TRBV7-3*01 TRBJ1-1*01 36.0 872.0 _CASSLTVLAGPNTEAFF 32 5905 BZLF1-190-197 EBV 0.94 2156 BZLF1-190-197 178 5727 10 EBV BZLF1 RAKFKQLL effector memory T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-B*08:01 B2M MHCI -7599 chip0423_313266 14.24 10.81 Chip2 T1D_5 T1D TGTGCCAGCCAACTAGCGGGAGGCACCGGGGAGCTGTTTTTT CASQLAGGTGELFF TRBV24-1*01 TRBJ2-2*01 77.0 4433.0 _CASQLAGGTGELFF 69 3368 BZLF1-190-197 EBV 0.73 2156 NEG 176 3192 12 EBV BZLF1 RAKFKQLL effector T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-B*08:01 B2M MHCI -7600 chip0423_51811 7.81 10.94 Chip2 T1D_5 T1D TGTGCAGCGGCGGAAACCTCCTACGACAAGGTGATATTT CAAAETSYDKVIF TRAV13-1*01 TRAJ50*01 43.0 4086.0 CAAAETSYDKVIF_ 32 5311 BZLF1-190-197 EBV 0.43 2156 NEG 180 5131 7 EBV BZLF1 RAKFKQLL transitional T cells between effector and memory populations PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-B*08:01 B2M MHCI -7601 chip0423_2121 -0.1 8.03 Chip2 healthy_4 healthy _ 6746 6938 ZNT8-228-236 ZNT8 0.5 8 NEG 152 6786 4 HomoSapiens ZNT8 SISVLISAL Naive T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*02:01 B2M MHCI -7602 chip0423_845584 11.41 10.9 Chip2 T1D_5 T1D TGTGCAGCTCAGGAAACCTCCTACGACAAGGTGATATTT CAAQETSYDKVIF TRAV13-1*01 TRAJ50*01 29.0 2003.0 TGTGCCAGCACCCAGGTAGACAGACCCAACTATGGCTACACCTTC CASTQVDRPNYGYTF TRBV7-9*01 TRBJ1-2*01 88.0 2941.0 CAAQETSYDKVIF_CASTQVDRPNYGYTF 17 5028 BZLF1-190-197 EBV 0.67 2156 NEG 166 4862 9 EBV BZLF1 RAKFKQLL effector memory T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-B*08:01 B2M MHCI -7603 chip0423_477793 10.67 8.84 Chip2 T1D_5 T1D TGTGCCAGCAGCCCCCTGGGAGGGAGCTCTGGAAACACCATATATTTT CASSPLGGSSGNTIYF TRBV7-9*01 TRBJ1-3*01 50.0 1745.0 _CASSPLGGSSGNTIYF 1 4794 BZLF1-190-197 EBV 0.82 2156 BZLF1-190-197 171 4623 10 EBV BZLF1 RAKFKQLL effector memory T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-B*08:01 B2M MHCI -7604 chip0423_507063 12.43 7.36 Chip2 T1D_4 T1D TGTGCCAGCAGCCAAGTCAACAACCCGGGGGATGGCTACACCTTC CASSQVNNPGDGYTF TRBV14*01 TRBJ1-2*01 13.0 368.0 _CASSQVNNPGDGYTF 94 5160 EBNA3A-158-166 EBV 0.47 444 EBNA3A-158-166 167 4993 10 EBV EBNA3A QAKWRLQTL effector memory T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-B*08:01 B2M MHCI -7605 chip0423_429653 -4.79 9.6 Chip2 T1D_6 T1D CGTGCTGCGTATTTAGGGGTAGTTGCTGACGGAGTCAGCTTT RAAYLGVVADGVSF TRAV36/DV7*01 TRAJ45*01 22.0 1106.0 TGTGCCATTAATACGAGAGATGACGCGCGGGACCCCTACGAGCAGTACTTC CAINTRDDARDPYEQYF TRBV6-2*01,TRBV6-3*01 TRBJ2-7*01 22.0 640.0 RAAYLGVVADGVSF_CAINTRDDARDPYEQYF 1 6101 IGRP-228-236 IGRP 0.95 16 IGRP-228-236 177 5924 2 HomoSapiens IGRP LNIDLLWSV Naive T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*02:01 B2M MHCI -7606 chip0423_837678 16.4 11.16 Chip2 healthy_3 healthy TGTGCCAGCAGCTTGTGGTACAGGGTGGAGACCCAGTACTTC CASSLWYRVETQYF TRBV5-6*01 TRBJ2-5*01 33.0 1348.0 _CASSLWYRVETQYF 4 2918 NP44-52 FLU 0.77 474 NP44-52 174 2744 12 InfluenzaA NP CTELKLSDY effector T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*01:01 B2M MHCI -7607 chip0423_715315 5.19 11.7 Chip2 T1D_4 T1D TGTGCCGTGTCGCGAGGAGACTTTGGAAATGAGAAATTAACCTTT CAVSRGDFGNEKLTF TRAV12-2*01 TRAJ48*01 63.0 2284.0 TGCAGTGCTAGAGACGGGCCTTCCAGCTCTGGGGCCAACGTCCTGACTTTC CSARDGPSSSGANVLTF TRBV20-1*01 TRBJ2-6*01 52.0 2467.0 CAVSRGDFGNEKLTF_CSARDGPSSSGANVLTF 1 3883 PGT-178 PGT 1.0 1480 NEG 148 3735 6 HomoSapiens PGT LLAGIGTVPI central memory T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*02:01 B2M MHCI -7608 chip0423_506418 6.23 12.17 Chip2 T1D_6 T1D TGTGCCAGTAGTCTTCGTTCGGGGGCGGTCGAGCAGTACTTC CASSLRSGAVEQYF TRBV19*01 TRBJ2-7*01 18.0 696.0 _CASSLRSGAVEQYF 1 5371 M1 FLU 0.86 1250 NEG 152 5219 7 InfluenzaA M1 GILGFVFTL transitional T cells between effector and memory populations PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*02:01 B2M MHCI -7609 chip0423_573085 16.06 9.94 Chip2 T1D_5 T1D TGTGCCAGCAGCTTATTAGGACGATCGAACACTGAAGCTTTCTTT CASSLLGRSNTEAFF TRBV7-9*01 TRBJ1-1*01 107.0 3211.0 _CASSLLGRSNTEAFF 8 3319 BZLF1-190-197 EBV 0.54 2156 NEG 195 3124 12 EBV BZLF1 RAKFKQLL effector T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-B*08:01 B2M MHCI -7610 chip0423_119031 -3.16 9.78 Chip2 T1D_6 T1D TGTGCTACAGCTGGCGGTGGTACTAGCTATGGAAAGCTGACATTT CATAGGGTSYGKLTF TRAV17*01 TRAJ52*01 52.0 1784.0 TGTGCCAGCAAAACCGTGACAGGGCCCAATCAGCCCCAGCATTTT CASKTVTGPNQPQHF TRBV27*01 TRBJ1-5*01 34.0 1227.0 CATAGGGTSYGKLTF_CASKTVTGPNQPQHF 1 5594 G6PC2-NLI-8 IGRP 0.82 32 G6PC2-NLI-8 147 5447 2 HomoSapiens G6PC2 NLIFKWIL Naive T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-B*08:01 B2M MHCI -7611 chip0423_859524 -1.13 8.87 Chip2 T1D_4 T1D TGTGCTGTGAAAACCCCCTACGACAAGGTGATATTT CAVKTPYDKVIF TRAV21*01 TRAJ50*01 7.0 685.0 TGCGCCAGCCGCTTGGGCCAGGGCCGCTCACCCCTCCACTTT CASRLGQGRSPLHF TRBV5-1*01 TRBJ1-6*01 3.0 90.0 CAVKTPYDKVIF_CASRLGQGRSPLHF 1 5178 GAD2-MMI-8 GAD65 0.97 40 GAD2-MMI-8 178 5000 3 HomoSapiens GAD2 MMIARFKM Naive T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-B*08:01 B2M MHCI -7612 chip0423_849434 15.76 11.11 Chip2 T1D_5 T1D TGTGCAGCTCAGGAAACCTCCTACGACAAGGTGATATTT CAAQETSYDKVIF TRAV13-1*01 TRAJ50*01 57.0 5465.0 TGTGCCAGCAGTTGGACAGGAAATGAGCAGTCCTTC CASSWTGNEQSF TRBV27*01 TRBJ2-1*01 2.0 220.0 CAAQETSYDKVIF_CASSWTGNEQSF 1 2581 BZLF1-190-197 EBV 0.46 2156 NEG 177 2404 12 EBV BZLF1 RAKFKQLL effector T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-B*08:01 B2M MHCI -7613 chip0423_844687 -2.13 9.47 Chip2 T1D_6 T1D TGTGCAATGAGCGATGATGGAGGTAGCAACTATAAACTGACATTT CAMSDDGGSNYKLTF TRAV12-3*01 TRAJ53*01 53.0 1978.0 CAMSDDGGSNYKLTF_ 1 6920 HCVNS4B-1807-1816 HCV 0.54 74 NEG 148 6772 3 HCV NS4B LLFNILGGWV Naive T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*02:01 B2M MHCI -7614 chip0423_37854 6.55 12.4 Chip2 healthy_4 healthy TGTGCTGCATTGGGGTCCTGGGGCTGGGAGTTACCTACTCACTTTC CAALGSWgg??ctGSYLLTF TRAV8-3*01 TRAJ28*01 2.0 23.0 TGTGCCAGCAGCCCACAGGGAGGGGGCTATGGCTACACCTTC CASSPQGGGYGYTF TRBV6-1*01 TRBJ1-2*01 13.0 635.0 CAALGSWgg??ctGSYLLTF_CASSPQGGGYGYTF 1 4850 EBV-LMP2-FLY EBV 0.7 355 NEG 173 4677 7 EBV LMP2 FLYALALLL transitional T cells between effector and memory populations PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*02:01 B2M MHCI -7615 chip0423_242586 7.72 9.01 Chip2 T1D_6 T1D TGCGCCAGCAGCCCTACTACAGGGTTCTCCGGGGAGCTGCTTTTT CASSPTTGFSGELLF TRBV4-3*01 TRBJ2-2*01 17.0 785.0 _CASSPTTGFSGELLF 1 10456 EBNA3A-193-201 EBV 0.43 1022 NEG 204 10252 8 EBV EBNA3A FLRGRAYGL effector memory T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-B*08:01 B2M MHCI -7616 chip0423_212847 13.06 7.87 Chip2 T1D_4 T1D TGTGCACCCAGGCGGCAAAGCGGGCTACAATAAGCTGATTTTT CAPRRQS??gGYNKLIF TRAV13-1*01 TRAJ4*01 1.0 14.0 TGTGCCAGCAGCTTAGCGGTCGGAGAAGGGCCCCAGCATTTT CASSLAVGEGPQHF TRBV7-9*01 TRBJ1-5*01 18.0 873.0 CAPRRQS??gGYNKLIF_CASSLAVGEGPQHF 1 3829 BZLF1-190-197 EBV 0.83 2156 BZLF1-190-197 173 3656 10 EBV BZLF1 RAKFKQLL effector memory T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-B*08:01 B2M MHCI -7617 chip0423_172654 0.4 7.94 Chip2 T1D_5 T1D TGTGCAATGAGAGGGGGTATAACCCGGGAGGAAAGCTTATCTTC CAMRGGIa?cPGGKLIF TRAV14/DV4*01 TRAJ23*01 43.0 1710.0 TGTGCCAGCAGCGTAGCGGCGGTTCCCAATCAGCCCCAGCATTTT CASSVAAVPNQPQHF TRBV9*01 TRBJ1-5*01 2.0 79.0 CAMRGGIa?cPGGKLIF_CASSVAAVPNQPQHF 1 10826 gp160-586-593 HIV 0.8 30 gp160-586-593 163 10663 4 HIV-1 gp160 YLKDQQLL Naive T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-B*08:01 B2M MHCI -7618 chip0423_323971 -4.21 11.7 Chip2 T1D_4 T1D TGTGCCAGCAGCCCGCCGGCGGGGAATGAGCAGTTCTTC CASSPPAGNEQFF TRBV7-9*01 TRBJ2-1*01 18.0 1260.0 _CASSPPAGNEQFF 1 4219 PGT-178 PGT 0.78 1480 NEG 147 4072 1 HomoSapiens PGT LLAGIGTVPI Naive T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*02:01 B2M MHCI -7619 chip0423_688881 -1.17 10.98 Chip2 T1D_6 T1D TGCGCCAGCATGGACCGGGGGACCGGGGAGCTGTTTTTT CASMDRGTGELFF TRBV5-1*01 TRBJ2-2*01 36.0 2494.0 _CASMDRGTGELFF 1 5928 PGT-178 PGT 0.58 1480 PGT-178 171 5757 3 HomoSapiens PGT LLAGIGTVPI Naive T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*02:01 B2M MHCI -7620 chip0423_444233 -1.59 8.87 Chip2 T1D_4 T1D TGTGCAATGAGCGAAGGGAACTTTGGAAATGAGAAATTAACCTTT CAMSEGNFGNEKLTF TRAV12-3*01 TRAJ48*01 43.0 2052.0 TGTGCCAGCAGCTTGTTCGCCAGCCAAGAGACCCAGTACTTC CASSLFASQETQYF TRBV5-6*01 TRBJ2-5*01 71.0 3084.0 CAMSEGNFGNEKLTF_CASSLFASQETQYF 1 7613 PGT-178 PGT 0.64 1480 PGT-178 194 7419 3 HomoSapiens PGT LLAGIGTVPI Naive T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*02:01 B2M MHCI -7621 chip0423_442868 10.85 7.53 Chip2 T1D_5 T1D _ 6746 6883 BZLF1-190-197 EBV 0.44 2156 NEG 171 6712 10 EBV BZLF1 RAKFKQLL effector memory T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-B*08:01 B2M MHCI -7622 chip0423_47110 -1.34 9.02 Chip2 healthy_3 healthy TGTGTTGTGAGTGATCGGTATAACCAGGGAGGCAAGCTTATCTTC CVVSDRYNQGGKLIF TRAV8-2*01 TRAJ23*01 125.0 3936.0 TGTGCCAGCAGTTTATGGCGGGAGGGCCCCAATGAGCAGTTCTTC CASSLWREGPNEQFF TRBV27*01 TRBJ2-1*01 18.0 1441.0 CVVSDRYNQGGKLIF_CASSLWREGPNEQFF 1 9014 IGRP-228-236 IGRP 0.72 16 IGRP-228-236 137 8877 3 HomoSapiens IGRP LNIDLLWSV Naive T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*02:01 B2M MHCI -7623 chip0423_435791 7.19 13.47 Chip2 healthy_4 healthy _ 6746 2246 M1 FLU 0.86 1250 NEG 157 2089 6 InfluenzaA M1 GILGFVFTL central memory T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*02:01 B2M MHCI -7624 chip0423_688977 9.2 8.74 Chip2 T1D_5 T1D TGTGCCAGCAGCTTAGGACGTGAAATCGGGCCCATCGAGCAGTTCTTC CASSLGREIGPIEQFF TRBV7-8*01 TRBJ2-1*01 16.0 670.0 _CASSLGREIGPIEQFF 4 4888 BZLF1-190-197 EBV 0.5 2156 BZLF1-190-197 159 4729 8 EBV BZLF1 RAKFKQLL effector memory T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-B*08:01 B2M MHCI -7625 chip0423_734089 9.66 7.89 Chip2 T1D_4 T1D TGTGCCAGCAGCTTAGCGGTCGGAGAAGGGCCCCAGCATTTT CASSLAVGEGPQHF TRBV7-9*01 TRBJ1-5*01 36.0 1377.0 _CASSLAVGEGPQHF 113 5810 BZLF1-190-197 EBV 0.85 2156 BZLF1-190-197 168 5642 8 EBV BZLF1 RAKFKQLL effector memory T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-B*08:01 B2M MHCI -7626 chip0423_844536 -4.04 11.37 Chip2 T1D_6 T1D GGTGCTGTGGGGGACCTATAGTTGCTCTAGCAACTCAGGCAAGCTCATCTTT GAVGDL*Lct??ctSNSGKLIF TRAV8-3*01,TRAV3*01 TRAJ37*01 6.0 268.0 TGCAGCGTTCTCTCCGGGGGCGGCACCGGGGAGCTGTTTTTT CSVLSGGGTGELFF TRBV29-1*01 TRBJ2-2*01 8.0 223.0 GAVGDL*Lct??ctSNSGKLIF_CSVLSGGGTGELFF 1 5546 IAPP-ILK-8 IAPP 0.62 20 NEG 162 5384 1 HomoSapiens IAPP ILKLQVFL Naive T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-B*08:01 B2M MHCI -7627 chip0423_842558 12.78 11.24 Chip2 T1D_5 T1D _ 6746 2403 BZLF1-190-197 EBV 0.57 2156 NEG 169 2234 9 EBV BZLF1 RAKFKQLL effector memory T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-B*08:01 B2M MHCI -7628 chip0423_769376 9.14 8.12 Chip2 T1D_4 T1D TGTGCCAGCAGCTTAACGGTTCTGGCAGGTCCAAACACTGAAGCTTTCTTT CASSLTVLAGPNTEAFF TRBV7-3*01 TRBJ1-1*01 25.0 679.0 _CASSLTVLAGPNTEAFF 32 4354 BZLF1-190-197 EBV 0.88 2156 BZLF1-190-197 192 4162 8 EBV BZLF1 RAKFKQLL effector memory T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-B*08:01 B2M MHCI -7629 chip0423_478798 9.97 9.81 Chip2 T1D_4 T1D TGTGCAGTGCGCGCCCCGACGTGGGTTGGCACGCTCATCTTT CAVRAPTWVGTLIF TRAV3*01 TRAJ30*01 11.0 455.0 TGTGTGGTGAGCTGAATTTATGGCGGAAGCCACGGAAATCTCATCTT CVVS*IYgg?RKPRKSHL TRAV10*01 TRAJ42*01 7.0 188.0 0.2 TGTGCCAGCAGCTTAGGAGGGGGAGAGGGGGCCAGTGAGCAGTTCTTC CASSLGGGEGASEQFF TRBV7-6*01 TRBJ2-1*01 12.0 622.0 CAVRAPTWVGTLIF_CASSLGGGEGASEQFF 1 4339 EBNA3A-193-201 EBV 0.48 1022 NEG 196 4143 9 EBV EBNA3A FLRGRAYGL effector memory T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-B*08:01 B2M MHCI -7630 chip0423_768128 11.2 10.2 Chip2 T1D_4 T1D TGTGCCGTGATCACATTTCGTTCTAACGACTACAAGCTCAGCTTT CAVITFRSNDYKLSF TRAV12-2*01 TRAJ20*01 86.0 3909.0 TGCGCCAGCAGCCACGGACAGGGGGAGAACACTGAAGCTTTCTTT CASSHGQGENTEAFF TRBV4-1*01 TRBJ1-1*01 18.0 709.0 CAVITFRSNDYKLSF_CASSHGQGENTEAFF 1 4087 BZLF1-190-197 EBV 0.65 2156 BZLF1-190-197 183 3904 9 EBV BZLF1 RAKFKQLL effector memory T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-B*08:01 B2M MHCI -7631 chip0423_528899 10.35 10.33 Chip2 T1D_5 T1D TCTGCCGCGGCCTATACCTCCTACGCCATGGTGCTACAT SAAAYTSYAMVLH TRAV13-1*01 TRAJ50*01 3.0 766.0 TGTGCCAGCCAACTAGCGGGAGGCACCGGGGAGCTGTTTTTT CASQLAGGTGELFF TRBV24-1*01 TRBJ2-2*01 30.0 1652.0 SAAAYTSYAMVLH_CASQLAGGTGELFF 1 5183 BZLF1-190-197 EBV 0.47 2156 NEG 164 5019 9 EBV BZLF1 RAKFKQLL effector memory T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-B*08:01 B2M MHCI -7632 chip0423_312037 15.19 12.76 Chip2 T1D_5 T1D TGTGCCAGCAGCTTCCTAGGACAGGGTAGCCCCTACGAGCAGTACTTC CASSFLGQGSPYEQYF TRBV7-9*01 TRBJ2-7*01 40.0 1935.0 _CASSFLGQGSPYEQYF 1 2401 BZLF1-190-197 EBV 0.56 2156 NEG 175 2226 12 EBV BZLF1 RAKFKQLL effector T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-B*08:01 B2M MHCI -7633 chip0423_504992 -1.2 10.49 Chip2 T1D_6 T1D TGTGTGGTGAACTTCGATTACAAGCTCAGCTTT CVVNFDYKLSF TRAV12-1*01 TRAJ20*01 11.0 747.0 TGTGCCAGTAGTCCCTCGGGCTCCGGGGAGCTGTTTTTT CASSPSGSGELFF TRBV19*01 TRBJ2-2*01 60.0 3161.0 CVVNFDYKLSF_CASSPSGSGELFF 1 6254 G6PC2-LTS-10 IGRP 0.9 59 G6PC2-LTS-10 173 6081 3 HomoSapiens G6PC2 LTSLTILQLY Naive T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*01:01 B2M MHCI -7634 chip0423_383643 15.44 9.32 Chip2 T1D_4 T1D TGCCTCCTGCCATTGGTGGGTGGTGCTAGCTATGGATCGCTGACATTT CLLPLVGGASYGSLTF TRAV26-2*01 TRAJ52*01 22.0 1288.0 TGTGCCAGCAGCTCGGGACAAGCCTACGAGCAGTACTTC CASSSGQAYEQYF TRBV7-8*01 TRBJ2-7*01 2.0 105.0 CLLPLVGGASYGSLTF_CASSSGQAYEQYF 1 4052 EBNA3A-193-201 EBV 0.61 1022 NEG 161 3891 12 EBV EBNA3A FLRGRAYGL effector T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-B*08:01 B2M MHCI -7635 chip0423_582653 15.04 10.53 Chip2 T1D_5 T1D TGTGCCGCGGCGGAAACCTCCTACGACAAGGTGAGATTT CAAAETSYDKVRF TRAV13-1*01 TRAJ50*01 14.0 1088.0 CAAAETSYDKVRF_ 1 3288 BZLF1-190-197 EBV 0.5 2156 NEG 176 3112 12 EBV BZLF1 RAKFKQLL effector T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-B*08:01 B2M MHCI -7636 chip0423_33447 -0.45 6.76 Chip2 T1D_6 T1D TGTGCTGTCTTTGATAACTATGGTCAGAATTTTGTCTTT CAVFDNYGQNFVF TRAV2*01 TRAJ26*01 1.0 14.0 TGTGCCAGCAGTTTGAGCAATCAGCCCCAGCATTTT CASSLSNQPQHF TRBV12-3*01,TRBV12-4*01 TRBJ1-5*01 23.0 1335.0 CAVFDNYGQNFVF_CASSLSNQPQHF 1 7862 PTPRN-482-490 PTPRN 0.5 10 NEG 200 7662 3 HomoSapiens PTPRN SLAAGVKLL Naive T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*02:01 B2M MHCI -7637 chip0423_686559 7.45 12.19 Chip2 T1D_6 T1D TGTGCTCTCTCCGGCACCACAGGCAAACTCGTCTTT CALSGTTGKLVF TRAV20*01 TRAJ37*01 23.0 1468.0 TGCGCCAGCAGCCAATGGGACAATCAGCCCCAGCATTTT CASSQWDNQPQHF TRBV4-1*01 TRBJ1-5*01 25.0 1283.0 CALSGTTGKLVF_CASSQWDNQPQHF 1 6178 INS-WMR-8 INS 0.87 17 NEG 199 5979 7 HomoSapiens INS WMRLLPLL transitional T cells between effector and memory populations PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-B*08:01 B2M MHCI -7638 chip0423_131261 10.09 8.69 Chip2 T1D_4 T1D TGTGCTGTGAGTGATGGAGAAGGAGCCCAGAAGCTGGTATTT CAVSDGEGAQKLVF TRAV8-6*01 TRAJ54*01 42.0 2036.0 TGTGCTTACTACCACGCCTCAGGGCGGATCTGAAAAGCTGGTCTTT CAYYHASgg??gcGSEKLVF TRAV38-2/DV8*01 TRAJ57*01 36.0 2123.0 0.39 TGTGCCAGCAGCTTAACGGTTCTGGCAGGTCCAAACACTGAAGCTTTCTTT CASSLTVLAGPNTEAFF TRBV7-3*01 TRBJ1-1*01 24.0 806.0 CAVSDGEGAQKLVF_CASSLTVLAGPNTEAFF 44 4524 BZLF1-190-197 EBV 0.81 2156 BZLF1-190-197 178 4346 8 EBV BZLF1 RAKFKQLL effector memory T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-B*08:01 B2M MHCI -7639 chip0423_571823 9.43 10.67 Chip2 T1D_4 T1D TGTGCTACGGAGGGGACTTCAGGATACAGCACCCTCACCTTT CATEGTSGYSTLTF TRAV17*01 TRAJ11*01 46.0 1964.0 TGTGCCAGCAGTTACTCCGGGGGCTACTATGGCTACACCTTC CASSYSGGYYGYTF TRBV6-5*01 TRBJ1-2*01 31.0 1164.0 CATEGTSGYSTLTF_CASSYSGGYYGYTF 1 7862 EBV-LMP2-FLY EBV 1.0 355 NEG 159 7703 9 EBV LMP2 FLYALALLL effector memory T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*02:01 B2M MHCI -7640 chip0423_196815 6.76 13.75 Chip2 T1D_6 T1D TGTGCCAGCAGCTTAGCGGGTCGTGAGGGTACGCAGTATTTT CASSLAGREGTQYF TRBV11-3*01 TRBJ2-3*01 13.0 572.0 _CASSLAGREGTQYF 13 3711 NP380-388 FLU 0.55 60 NEG 162 3549 7 InfluenzaA NP ELRSRYWAI transitional T cells between effector and memory populations PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-B*08:01 B2M MHCI -7641 chip0423_63091 11.3 10.19 Chip2 T1D_5 T1D TGTGCAATGAGAGAGGGCGAGGCTGGAGGCTTCAAAACTATCTTT CAMREGEAGGFKTIF TRAV14/DV4*01 TRAJ9*01 43.0 1277.0 TGTGCCAGCAGCCCCCTGGGGGGAGTTAATTCACCCCTCCACTTT CASSPLGGVNSPLHF TRBV7-9*01 TRBJ1-6*01 23.0 926.0 CAMREGEAGGFKTIF_CASSPLGGVNSPLHF 1 4138 BZLF1-190-197 EBV 0.57 2156 NEG 171 3967 9 EBV BZLF1 RAKFKQLL effector memory T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-B*08:01 B2M MHCI -7642 chip0423_185244 8.19 11.59 Chip2 T1D_5 T1D TGTGCCAGCCAACTAGCGGGAGGCACCGGGGAGCTGTTTTTT CASQLAGGTGELFF TRBV24-1*01 TRBJ2-2*01 16.0 941.0 _CASQLAGGTGELFF 69 4215 BZLF1-190-197 EBV 0.57 2156 NEG 164 4051 7 EBV BZLF1 RAKFKQLL transitional T cells between effector and memory populations PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-B*08:01 B2M MHCI -7643 chip0423_117080 6.19 9.17 Chip2 T1D_6 T1D _ 6746 11162 EBNA3A-158-166 EBV 0.83 444 NEG 176 10986 6 EBV EBNA3A QAKWRLQTL central memory T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-B*08:01 B2M MHCI -7644 chip0423_86354 12.47 7.01 Chip2 T1D_5 T1D TGTGCTAGTGGTCCGGACATATCCTACTCCTACGAGCAGTACTTC CASGPDISYSYEQYF TRBV12-5*01 TRBJ2-7*01 12.0 708.0 _CASGPDISYSYEQYF 10 4171 BZLF1-190-197 EBV 0.8 2156 BZLF1-190-197 187 3984 10 EBV BZLF1 RAKFKQLL effector memory T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-B*08:01 B2M MHCI -7645 chip0423_428523 11.77 11.17 Chip2 T1D_6 T1D TGCAGCGCCGGCAGGGACGGGACTAATGAAAAACTGTTTTTT CSAGRDGTNEKLFF TRBV29-1*01 TRBJ1-4*01 86.0 4074.0 _CSAGRDGTNEKLFF 159 3075 EBV-BLMF1 EBV 0.5 2531 NEG 157 2918 9 EBV BLMF1 GLCTLVAML effector memory T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*02:01 B2M MHCI -7646 chip0423_325534 14.85 11.14 Chip2 T1D_4 T1D TGCATCGTCAGAGAGGGAGGAGGTGCTGACGGACTCCCCTTT CIVREGGGADGLPF TRAV26-1*01 TRAJ45*01 24.0 892.0 TGCATCGTCAGAGTCGTGTGTACGGCACTGCCAGTAAACTCACCTTT CIVRVVCac?GTASKLTF TRAV26-1*01 TRAJ44*01 41.0 1838.0 0.53 TGTGCCAGCAGCTTAGCGGTCGGAGAAGGGCCCCAGCACTTT CASSLAVGEGPQHF TRBV7-9*01 TRBJ1-5*01 34.0 1774.0 CIVREGGGADGLPF_CASSLAVGEGPQHF 21 2972 BZLF1-190-197 EBV 0.86 2156 NEG 196 2776 12 EBV BZLF1 RAKFKQLL effector T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-B*08:01 B2M MHCI -7647 chip0423_606060 15.31 11.22 Chip2 T1D_5 T1D TGTGCAACGAGGGCCATTGAGGGGGCAAACAACCTCTTCTTT CATRAIEGANNLFF TRAV14/DV4*01 TRAJ36*01 35.0 1995.0 TGCGCCAGCAGCCTCAGTTCGGGGGGCCGTGGCGAGCAGTACTTC CASSLSSGGRGEQYF TRBV4-1*01 TRBJ2-7*01 14.0 1266.0 CATRAIEGANNLFF_CASSLSSGGRGEQYF 1 2667 BZLF1-190-197 EBV 0.57 2156 NEG 172 2495 12 EBV BZLF1 RAKFKQLL effector T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-B*08:01 B2M MHCI -7648 chip0423_189394 7.48 9.53 Chip2 T1D_6 T1D TGTGCCAGCAGTGAAGACAGCAACTATGGCTACACCTTC CASSEDSNYGYTF TRBV2*01 TRBJ1-2*01 19.0 1322.0 _CASSEDSNYGYTF 1 11611 IAPP-STN-9 IAPP 0.68 48 IAPP-STN-9 185 11426 8 HomoSapiens IAPP STNVGSNTY effector memory T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*01:01 B2M MHCI -7649 chip0423_437286 6.56 11.64 Chip2 T1D_4 T1D TGTGCAGCAAGCGACCGCCTTCCAGGAGGAAGCTACATACCTACATTT CAASDRLPGGSYIPTF TRAV13-1*01 TRAJ6*01 4.0 105.0 TGCAGTGCTACTAACCAGTACGACGGACCCGACACTGAAGCTTTCTTT CSATNQYDGPDTEAFF TRBV20-1*01 TRBJ1-1*01 8.0 211.0 CAASDRLPGGSYIPTF_CSATNQYDGPDTEAFF 21 5778 BZLF1-190-197 EBV 0.78 2156 NEG 172 5606 7 EBV BZLF1 RAKFKQLL transitional T cells between effector and memory populations PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-B*08:01 B2M MHCI -7650 chip0423_689804 10.69 6.68 Chip2 T1D_5 T1D TGTGCAGGAGCCGCAACTGACAGCTGGGGGAAATTGCAGTTT CAGAATDSWGKLQF TRAV27*01 TRAJ24*01 4.0 80.0 TGTGCCAGCAGCGCCTTGGGACATAGAAACACTGAAGCTTTCTTT CASSALGHRNTEAFF TRBV7-9*01 TRBJ1-1*01 72.0 1767.0 CAGAATDSWGKLQF_CASSALGHRNTEAFF 1 10009 BZLF1-190-197 EBV 0.46 2156 NEG 207 9802 10 EBV BZLF1 RAKFKQLL effector memory T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-B*08:01 B2M MHCI -7651 chip0423_144892 11.5 7.26 Chip2 T1D_5 T1D TGTGCAGCAACCGAAACCTCCTACGACAAGGTGATATTT CAATETSYDKVIF TRAV13-1*01 TRAJ50*01 1.0 23.0 TGTGCCAGCAGCCCCTTGGGACAGGGAGGGGATTATGGCTACACCTTC CASSPLGQGGDYGYTF TRBV7-9*01 TRBJ1-2*01 18.0 734.0 CAATETSYDKVIF_CASSPLGQGGDYGYTF 1 4130 BZLF1-190-197 EBV 0.86 2156 NEG 203 3927 10 EBV BZLF1 RAKFKQLL effector memory T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-B*08:01 B2M MHCI -7652 chip0423_571530 10.03 7.31 Chip2 T1D_5 T1D TGTGCAGCAAGTGAAACCTCCTACGACAAGGTGATATTT CAASETSYDKVIF TRAV13-1*01 TRAJ50*01 1.0 27.0 TGTGCCAGCAGCGCTCACAGGGGCGGCTACACCTTC CASSAHRGGYTF TRBV7-8*01 TRBJ1-2*01 33.0 1461.0 CAASETSYDKVIF_CASSAHRGGYTF 1 4494 BZLF1-190-197 EBV 0.47 2156 NEG 197 4297 10 EBV BZLF1 RAKFKQLL effector memory T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-B*08:01 B2M MHCI -7653 chip0423_511393 6.71 10.31 Chip2 T1D_6 T1D _ 6746 6545 EBNA3A-158-166 EBV 0.75 444 NEG 170 6375 6 EBV EBNA3A QAKWRLQTL central memory T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-B*08:01 B2M MHCI -7654 chip0423_706967 6.87 10.27 Chip2 T1D_6 T1D TGCATCCTCCCACTTGCTGGTGGTACTAGCTATGGAAAGCTGACATTT CILPLAGGTSYGKLTF TRAV26-2*01 TRAJ52*01 57.0 2359.0 TGTGCCAGCAGCTTGGGACAGGCCTACGAGCAGTACTTC CASSLGQAYEQYF TRBV7-8*01 TRBJ2-7*01 5.0 300.0 CILPLAGGTSYGKLTF_CASSLGQAYEQYF 308 9962 EBNA3A-193-201 EBV 0.9 1022 EBNA3A-193-201 171 9791 7 EBV EBNA3A FLRGRAYGL transitional T cells between effector and memory populations PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-B*08:01 B2M MHCI -7655 chip0423_38400 12.39 7.2 Chip2 T1D_6 T1D GGTGCAGCAAGCAAGATAGGGGAGGAGGTGCTGACGGCCTCACCCTT GAASKIGga?GGADGLTL TRAV23/DV6*01 TRAJ45*01 47.0 1929.0 TGTGCCAGCAGCTTGGGACAGGCCTACGAGCAGTACTTC CASSLGQAYEQYF TRBV7-8*01 TRBJ2-7*01 15.0 597.0 GAASKIGga?GGADGLTL_CASSLGQAYEQYF 1 4925 EBNA3A-193-201 EBV 0.58 1022 EBNA3A-193-201 168 4757 10 EBV EBNA3A FLRGRAYGL effector memory T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-B*08:01 B2M MHCI -7656 chip0423_624767 9.16 9.79 Chip2 T1D_4 T1D TGCAGCGTTGGAAAAATCGGGACAGGGCAGTTCTTC CSVGKIGTGQFF TRBV29-1*01 TRBJ2-1*01 89.0 9916.0 _CSVGKIGTGQFF 2 7107 BZLF1-190-197 EBV 0.47 2156 NEG 179 6928 8 EBV BZLF1 RAKFKQLL effector memory T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-B*08:01 B2M MHCI -7657 chip0423_582689 12.58 6.79 Chip2 T1D_4 T1D TGTGCCAGCAGCCAAGTCAACAACCCGGGGGATGGCTACACCTTC CASSQVNNPGDGYTF TRBV14*01 TRBJ1-2*01 10.0 484.0 _CASSQVNNPGDGYTF 94 5480 EBNA3A-158-166 EBV 0.67 444 NEG 175 5305 10 EBV EBNA3A QAKWRLQTL effector memory T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-B*08:01 B2M MHCI -7658 chip0423_411294 6.11 9.72 Chip2 healthy_3 healthy TGTGCCAGCAGCCCGAGACTCTTGTCGGGAACCGGGGAGCTGTTTTTT CASSPRLLSGTGELFF TRBV7-9*01 TRBJ2-2*01 49.0 1798.0 _CASSPRLLSGTGELFF 4 11363 PGT-178 PGT 0.85 1480 NEG 177 11186 6 HomoSapiens PGT LLAGIGTVPI central memory T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*02:01 B2M MHCI -7659 chip0423_386267 14.71 8.44 Chip2 undetermined TGCAGCGTTGGATCAGGGGGAACTAATGAAAAACTGTTTTTT CSVGSGGTNEKLFF TRBV29-1*01 TRBJ1-4*01 43.0 3237.0 _CSVGSGGTNEKLFF 6 2622 EBV-BLMF1 EBV 0.45 2531 NEG 174 2448 12 EBV BLMF1 GLCTLVAML effector T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*02:01 B2M MHCI -7660 chip0423_359393 11.39 6.93 Chip2 T1D_4 T1D TGTGCCAGCAGCCAAGTCAACAACCCGGGGGGTGGCCACACCTTC CASSQVNNPGGGHTF TRBV14*01 TRBJ1-2*01 4.0 128.0 _CASSQVNNPGGGHTF 1 5371 EBNA3A-158-166 EBV 0.68 444 NEG 193 5178 10 EBV EBNA3A QAKWRLQTL effector memory T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-B*08:01 B2M MHCI -7661 chip0423_251166 9.77 9.21 Chip2 T1D_6 T1D TGCAGCGCCGGCAGGGACGGGACTAATGAAAAACTGTTTTTT CSAGRDGTNEKLFF TRBV29-1*01 TRBJ1-4*01 125.0 3266.0 _CSAGRDGTNEKLFF 159 4476 EBV-BLMF1 EBV 1.0 2531 NEG 201 4275 8 EBV BLMF1 GLCTLVAML effector memory T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*02:01 B2M MHCI -7662 chip0423_200808 7.31 11.69 Chip2 healthy_3 healthy TGTGCCAGCACGGGGACTAGCGATAGCACAGATACGCAGTATTTT CASTGTSDSTDTQYF TRBV2*01 TRBJ2-3*01 25.0 1107.0 _CASTGTSDSTDTQYF 9 6402 NP44-52 FLU 0.64 474 NP44-52 142 6260 7 InfluenzaA NP CTELKLSDY transitional T cells between effector and memory populations PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*01:01 B2M MHCI -7663 chip0423_78549 8.75 11.43 Chip2 T1D_5 T1D TGTGCAGCGGCGGAAACCTCCTACGACAAGGTGATATTT CAAAETSYDKVIF TRAV13-1*01 TRAJ50*01 21.0 2738.0 TGTGCCAGCCAACTAGCGGGAGGCACCGGGGAGCTGTTTTTT CASQLAGGTGELFF TRBV24-1*01 TRBJ2-2*01 33.0 1759.0 CAAAETSYDKVIF_CASQLAGGTGELFF 131 3876 BZLF1-190-197 EBV 0.7 2156 NEG 157 3719 9 EBV BZLF1 RAKFKQLL effector memory T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-B*08:01 B2M MHCI -7664 chip0423_730564 15.12 9.12 Chip2 T1D_5 T1D TGTGCCAGCAGCTTAGTTGACAAACCCTACGAGCAGTACTTC CASSLVDKPYEQYF TRBV7-9*01 TRBJ2-7*01 49.0 2678.0 _CASSLVDKPYEQYF 1 2130 BZLF1-190-197 EBV 0.46 2156 NEG 158 1972 12 EBV BZLF1 RAKFKQLL effector T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-B*08:01 B2M MHCI -7665 chip0423_333364 10.94 6.95 Chip2 T1D_5 T1D TGCGCCAGCAGCCTCAGTTCGGGGGGCCGTGGCGAGCAGTACTTC CASSLSSGGRGEQYF TRBV4-1*01 TRBJ2-7*01 20.0 1037.0 _CASSLSSGGRGEQYF 11 4753 BZLF1-190-197 EBV 0.76 2156 BZLF1-190-197 182 4571 10 EBV BZLF1 RAKFKQLL effector memory T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-B*08:01 B2M MHCI -7666 chip0423_792231 5.0 11.66 Chip2 T1D_4 T1D TGTGCTGTGAGTGAGAGGATCCGGGGGGCCCAGAAGCTGGTATTT CAVSERIRGAQKLVF TRAV8-4*01 TRAJ54*01 48.0 1978.0 TGTGCCAGCAGCTTGGGGGGGGGACACACAGATACGCAGTATTTT CASSLGGGHTDTQYF TRBV5-4*01 TRBJ2-3*01 41.0 1550.0 CAVSERIRGAQKLVF_CASSLGGGHTDTQYF 1 5331 M1 FLU 0.73 1250 NEG 181 5150 6 InfluenzaA M1 GILGFVFTL central memory T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*02:01 B2M MHCI -7667 chip0423_835423 11.9 7.26 Chip2 T1D_4 T1D TGTGCCAGCAGTGTAGTAGGGGGCGACTATGGCTACACCTTC CASSVVGGDYGYTF TRBV2*01 TRBJ1-2*01 32.0 2145.0 _CASSVVGGDYGYTF 1 4859 EBNA3A-193-201 EBV 0.59 1022 NEG 200 4659 10 EBV EBNA3A FLRGRAYGL effector memory T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-B*08:01 B2M MHCI -7668 chip0423_100271 -3.69 8.66 Chip2 T1D_6 T1D TGTGCAATGAGCTTATCTAACTTTGGAAATGAGAAATTAACCTTT CAMSLSNFGNEKLTF TRAV12-3*01 TRAJ48*01 94.0 3277.0 TGTGCCAGCAGCCGAAACAAGGGGAGAGAGACCCAGTACTTC CASSRNKGRETQYF TRBV14*01 TRBJ2-5*01 8.0 395.0 CAMSLSNFGNEKLTF_CASSRNKGRETQYF 1 5993 PGT-178 PGT 0.93 1480 NEG 164 5829 2 HomoSapiens PGT LLAGIGTVPI Naive T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*02:01 B2M MHCI -7669 chip0423_366548 7.46 12.43 Chip2 healthy_4 healthy TGTGTTGTGAGTGATCCCCCAATTCAGGAGGAGGTGCTGACGGACTCACCTTT CVVSDPPIca?GGGADGLTF TRAV8-2*01 TRAJ45*01 42.0 2155.0 TGCAGTGCTACAGACAGGGGGGAGTCCGGGGCCAACGTCCTGACTTTC CSATDRGESGANVLTF TRBV20-1*01 TRBJ2-6*01 24.0 1143.0 CVVSDPPIca?GGGADGLTF_CSATDRGESGANVLTF 1 3686 HCVNS4B-1807-1816 HCV 0.83 74 NEG 149 3537 7 HCV NS4B LLFNILGGWV transitional T cells between effector and memory populations PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*02:01 B2M MHCI -7670 chip0423_480739 12.17 7.31 Chip2 T1D_4 T1D TGTGCCAGCAGCCAAGTCCACAACCCGGGGGATGGCTACACCTTC CASSQVHNPGDGYTF TRBV14*01 TRBJ1-2*01 5.0 156.0 _CASSQVHNPGDGYTF 1 4346 EBNA3A-158-166 EBV 0.7 444 NEG 167 4179 10 EBV EBNA3A QAKWRLQTL effector memory T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-B*08:01 B2M MHCI -7671 chip0423_258486 9.93 9.79 Chip2 T1D_4 T1D TGTGCCGTCTGGAGGGACGGAGCCTACGAGCAGTACTTC CAVWRDGAYEQYF TRBV28*01 TRBJ2-7*01 3.0 265.0 _CAVWRDGAYEQYF 12 5439 EBV-LMP1-1 EBV 0.79 237 NEG 185 5254 9 EBV LMP1 YLLEMLWRL effector memory T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*02:01 B2M MHCI -7672 chip0423_189077 16.38 10.72 Chip2 T1D_5 T1D TGTGCAGTGTGTAGGGGGGGGTGCTGGGCTTCCCAGATAAACTTT CAVCRGGCWASQINF TRAV14/DV4*01 TRAJ3*01 11.0 138.0 TGCAGCGTCGGGACCTCGGGCGGCTACACCTTC CSVGTSGGYTF TRBV29-1*01 TRBJ1-2*01 42.0 4346.0 CAVCRGGCWASQINF_CSVGTSGGYTF 1 2251 BZLF1-190-197 EBV 0.58 2156 NEG 183 2068 12 EBV BZLF1 RAKFKQLL effector T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-B*08:01 B2M MHCI -7673 chip0423_145361 -0.71 9.55 Chip2 T1D_6 T1D TGTGCTTTTGATTCTGGCTGCCGCACCCTCACCTTT CAFDSGCRTLTF TRAV17*01 TRAJ11*01 16.0 1147.0 TGTGCCAGCAGTGTCCAGGGGGGGACTGAAGCTTTCTTT CASSVQGGTEAFF TRBV25-1*01 TRBJ1-1*01 43.0 1663.0 CAFDSGCRTLTF_CASSVQGGTEAFF 1 7238 ZNT8-186-194 ZNT8 0.76 22 NEG 180 7058 3 HomoSapiens ZNT8 VAANIVLTV Naive T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*02:01 B2M MHCI -7674 chip0423_256104 -2.59 10.32 Chip2 T1D_5 T1D TGTGCTCTGAGTGAGGGGCAGGGAGCCCAGAAGCCGGTATTT CALSEGQGAQKPVF TRAV9-2*01 TRAJ54*01 48.0 1534.0 TGTGCCAGCAGTTTTTCAGTTCGGAGTTGGACTAATGGCTACACCTTC CASSFSVRSWTNGYTF TRBV28*01 TRBJ1-2*01 6.0 98.0 CALSEGQGAQKPVF_CASSFSVRSWTNGYTF 1 5868 ZNT8-YAY-8 ZNT8 0.85 54 ZNT8-YAY-8 166 5702 3 HomoSapiens ZNT8 YAYAKWKL Naive T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-B*08:01 B2M MHCI -7675 chip0423_864213 -1.27 10.48 Chip2 T1D_4 T1D TGTGCCGTAACGAACACCGGTAACCAGTTCTATTTT CAVTNTGNQFYF TRAV12-2*01 TRAJ49*01 2.0 46.0 TGTGCCAGCACCGAGGGACAGGGTCCGGCCCAGCATTTT CASTEGQGPAQHF TRBV2*01 TRBJ1-5*01 13.0 758.0 CAVTNTGNQFYF_CASTEGQGPAQHF 1 5615 PGT-178 PGT 0.6 1480 NEG 151 5464 3 HomoSapiens PGT LLAGIGTVPI Naive T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*02:01 B2M MHCI -7676 chip0423_849607 14.7 8.33 Chip2 T1D_6 T1D TGCATCCTCCCACTTCCTGGTGGTACTAGCCATGGAAAGCTGACATTT CILPLPGGTSHGKLTF TRAV26-2*01 TRAJ52*01 20.0 1008.0 TGTGCCAGCAGCTTGGGACAGGCCTACGAGCAGTACTTC CASSLGQAYEQYF TRBV7-8*01 TRBJ2-7*01 38.0 1884.0 CILPLPGGTSHGKLTF_CASSLGQAYEQYF 1 3627 EBNA3A-193-201 EBV 0.9 1022 EBNA3A-193-201 180 3447 12 EBV EBNA3A FLRGRAYGL effector T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-B*08:01 B2M MHCI -7677 chip0423_187745 -1.0 9.75 Chip2 healthy_4 healthy TGTGCAATGAGTCTTGGTGGCTACAATAAGCTGATTTTT CAMSLGGYNKLIF TRAV12-3*01 TRAJ4*01 20.0 2006.0 TGTGCCAGCAGCGTAGAGGATCAGGGGGCTCGGGAGCAGTACTTC CASSVEDQGAREQYF TRBV9*01 TRBJ2-7*01 8.0 451.0 CAMSLGGYNKLIF_CASSVEDQGAREQYF 1 7045 PGT-178 PGT 0.67 1480 PGT-178 177 6868 3 HomoSapiens PGT LLAGIGTVPI Naive T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*02:01 B2M MHCI -7678 chip0423_717920 -2.51 7.64 Chip2 T1D_6 T1D TGTGCTTCCCGGGCGGGAGGAAGGCTTATCTTC CASRAGGRLIF TRAV8-1*01 TRAJ23*01 8.0 827.0 TGTGCCAGCAGCCCAGCGTTCTTGAGCCCCGGGTACTATGGCTACACCTTC CASSPAFLSPGYYGYTF TRBV3-1*01 TRBJ1-2*01 57.0 2032.0 CASRAGGRLIF_CASSPAFLSPGYYGYTF 1 5528 EBV-BRLF1 EBV 0.43 1264 NEG 183 5345 3 EBV BRLF1 YVLDHLIVV Naive T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*02:01 B2M MHCI -7679 chip0423_632072 10.29 11.09 Chip2 T1D_6 T1D TGTGCCGTGTGGGCAGGCAACATGCTCACCTTT CAVWAGNMLTF TRAV8-1*01 TRAJ39*01 13.0 2007.0 CAVWAGNMLTF_ 2 3558 EBV-BRLF1 EBV 1.0 1264 NEG 159 3399 9 EBV BRLF1 YVLDHLIVV effector memory T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*02:01 B2M MHCI -7680 chip0423_558685 -2.79 11.84 Chip2 T1D_6 T1D _ 6746 5213 CVB3-P3A CVB 0.81 77 CVB3-P3A 169 5044 4 CoxsackievirusB P3A GIIYIIYKL Naive T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*02:01 B2M MHCI -7681 chip0423_759826 -1.45 8.52 Chip2 T1D_5 T1D TGCGCCAGCAGCCTACGGACGGCTGAGCAGTTCTTC CASSLRTAEQFF TRBV5-1*01 TRBJ2-1*01 44.0 3497.0 _CASSLRTAEQFF 1 6835 LMP2A-CPL EBV 0.51 44 LMP2A-CPL 143 6692 4 EBV LMP2A CPLSKILL Naive T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-B*08:01 B2M MHCI -7682 chip0423_637832 -2.29 12.62 Chip2 T1D_4 T1D _ 6746 4195 IAPP-MGI-9 IAPP 0.55 5 NEG 147 4048 1 HomoSapiens IAPP MGILKLQVF Naive T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-B*08:01 B2M MHCI -7683 chip0423_619526 9.93 6.92 Chip2 T1D_4 T1D TGCGCCAGCAGCTTGGAGGGACAGGCCAGCTCCTACGAGCAGTACTTC CASSLEGQASSYEQYF TRBV5-1*01 TRBJ2-7*01 12.0 675.0 _CASSLEGQASSYEQYF 9 7208 EBV-LMP2A EBV 0.63 700 EBV-LMP2A 191 7017 10 EBV LMP2A CLGGLLTMV effector memory T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*02:01 B2M MHCI -7684 chip0423_250314 11.02 9.29 Chip2 T1D_4 T1D TGTGCCGTCTGGAGGGACGGAGCCTACGAGCAGTACTTC CAVWRDGAYEQYF TRBV28*01 TRBJ2-7*01 28.0 1488.0 _CAVWRDGAYEQYF 12 5192 EBV-LMP1-1 EBV 0.78 237 NEG 173 5019 9 EBV LMP1 YLLEMLWRL effector memory T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*02:01 B2M MHCI -7685 chip0423_116158 -4.01 9.43 Chip2 T1D_4 T1D TGTGTGGTGGCCCGATCTAACTTTGGAAATGAGAAATTAACCTTT CVVARSNFGNEKLTF TRAV12-1*01 TRAJ48*01 38.0 1349.0 TGTGCCAGCAGTGAAGAGACAGGGTTTGGGGCCAACGTCCTGACTTTC CASSEETGFGANVLTF TRBV2*01 TRBJ2-6*01 29.0 1308.0 CVVARSNFGNEKLTF_CASSEETGFGANVLTF 1 5440 PGT-178 PGT 0.79 1480 PGT-178 147 5293 2 HomoSapiens PGT LLAGIGTVPI Naive T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*02:01 B2M MHCI -7686 chip0423_802781 -4.55 9.27 Chip2 T1D_6 T1D TGTGCCGTGAACAGCTTTACCTCAGGAACCTACAAATACATCTTT CAVNSFTSGTYKYIF TRAV12-2*01 TRAJ40*01 42.0 1383.0 TGTGCCAGCTCACCACCTTACGGAGAGCGGGAGGAAGATACGCAGTATTTT CASSPPYGEREEDTQYF TRBV18*01 TRBJ2-3*01 48.0 2218.0 CAVNSFTSGTYKYIF_CASSPPYGEREEDTQYF 1 5392 IGRP-152-160-WLI IGRP 0.6 27 NEG 172 5220 2 HomoSapiens IGRP FLWSVFWLI Naive T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*02:01 B2M MHCI -7687 chip0423_687690 14.03 10.76 Chip2 T1D_5 T1D TGTGCAATGAGCTCCATGGACACGGGCAGGAGAGCACTTACTTTT CAMSSMDTGRRALTF TRAV12-3*01 TRAJ5*01 57.0 3064.0 TGTGCCAGCAGTCTACATGACACTGAAGCTTTCTTT CASSLHDTEAFF TRBV28*01 TRBJ1-1*01 27.0 1820.0 CAMSSMDTGRRALTF_CASSLHDTEAFF 2 3977 BZLF1-190-197 EBV 0.9 2156 NEG 186 3791 12 EBV BZLF1 RAKFKQLL effector T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-B*08:01 B2M MHCI -7688 chip0423_161905 14.48 12.1 Chip2 T1D_4 T1D TGTGCCAGCAGCTTAGCGGTCGGAGAAGGGCCCCAGCATTTT CASSLAVGEGPQHF TRBV7-9*01 TRBJ1-5*01 59.0 2021.0 _CASSLAVGEGPQHF 113 2535 BZLF1-190-197 EBV 0.92 2156 BZLF1-190-197 173 2362 12 EBV BZLF1 RAKFKQLL effector T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-B*08:01 B2M MHCI -7689 chip0423_718315 8.12 9.92 Chip2 T1D_6 T1D _ 6746 7689 EBNA3A-158-166 EBV 0.8 444 NEG 169 7520 8 EBV EBNA3A QAKWRLQTL effector memory T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-B*08:01 B2M MHCI -7690 chip0423_173181 12.14 10.56 Chip2 T1D_5 T1D TGTGCAGCACGGGAAACCTCCTACGACAAGGTGATATTT CAARETSYDKVIF TRAV13-1*01 TRAJ50*01 28.0 2014.0 TGTGCCAGCAGCTTAGTACAGGGCTACGAGCAGTACTTC CASSLVQGYEQYF TRBV7-9*01 TRBJ2-7*01 36.0 2088.0 CAARETSYDKVIF_CASSLVQGYEQYF 4 3670 BZLF1-190-197 EBV 0.8 2156 NEG 166 3504 9 EBV BZLF1 RAKFKQLL effector memory T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-B*08:01 B2M MHCI -7691 chip0423_126950 12.7 6.87 Chip2 T1D_5 T1D TGTGCCAGCCAACTAGCGGGAGGCACCGGGGAGCTGTTTTTT CASQLAGGTGELFF TRBV24-1*01 TRBJ2-2*01 7.0 261.0 _CASQLAGGTGELFF 69 4037 BZLF1-190-197 EBV 0.86 2156 NEG 147 3890 10 EBV BZLF1 RAKFKQLL effector memory T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-B*08:01 B2M MHCI -7692 chip0423_27128 4.89 9.86 Chip2 T1D_4 T1D TGTGCCAGCAGTTACTCAAGTACAGGGGAGTACTTC CASSYSSTGEYF TRBV6-2*01,TRBV6-3*01 TRBJ2-7*01 5.0 172.0 _CASSYSSTGEYF 32 4051 EBV-LMP1-1 EBV 0.5 237 NEG 145 3906 6 EBV LMP1 YLLEMLWRL central memory T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*02:01 B2M MHCI -7693 chip0423_87655 -0.52 6.75 Chip2 healthy_3 healthy TGTGCTCTGAGTGAGTCGTACAGCAGTGCTTCCAAGATAATCTTT CALSESYSSASKIIF TRAV19*01 TRAJ3*01 2.0 59.0 CALSESYSSASKIIF_ 1 9923 NP140-148 FLU 0.54 102 NP140-148 149 9774 3 InfluenzaA NP HSNLNDATY Naive T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*01:01 B2M MHCI -7694 chip0423_310549 6.23 10.01 Chip2 T1D_6 T1D TGCATCCTCCCACTTGCTGGTGGTACTAGCTATGGAAAGCTGACATTT CILPLAGGTSYGKLTF TRAV26-2*01 TRAJ52*01 31.0 1999.0 TGTGCCAGCAGCTTGGGACAGGCCTACGAGCAGTACTTC CASSLGQAYEQYF TRBV7-8*01 TRBJ2-7*01 7.0 501.0 CILPLAGGTSYGKLTF_CASSLGQAYEQYF 308 7508 EBNA3A-193-201 EBV 0.79 1022 EBNA3A-193-201 177 7331 6 EBV EBNA3A FLRGRAYGL central memory T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-B*08:01 B2M MHCI -7695 chip0423_42558 5.67 11.72 Chip2 healthy_3 healthy TGTGCCTTTACTGGGGCAAACAACCTCTTCTTT CAFTGANNLFF TRAV12-1*01 TRAJ36*01 21.0 2049.0 TGTGCCAGCAGCACCTACTACAATGAGCAGTTCTTC CASSTYYNEQFF TRBV14*01 TRBJ2-1*01 8.0 302.0 CAFTGANNLFF_CASSTYYNEQFF 1 8154 PGT-178 PGT 0.69 1480 NEG 155 7999 7 HomoSapiens PGT LLAGIGTVPI transitional T cells between effector and memory populations PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*02:01 B2M MHCI -7696 chip0423_614841 -0.9 6.6 Chip2 T1D_5 T1D TGTGCTCTGAGTGAGGTAGGTGGGTATGGAGGAAGCCAAGGAAATCTCATCTTT CALSEVGGYGGSQGNLIF TRAV19*01 TRAJ42*01 13.0 101.0 TGTGCCAGCAGCTCGACTAGCGGGAGCACAGATACGCAGTATTTT CASSSTSGSTDTQYF TRBV7-9*01 TRBJ2-3*01 87.0 4990.0 CALSEVGGYGGSQGNLIF_CASSSTSGSTDTQYF 1 8264 GAD2-SLK-9 GAD65 0.69 2 GAD2-SLK-9 139 8125 3 HomoSapiens GAD2 SLKKGAAAL Naive T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-B*08:01 B2M MHCI -7697 chip0423_438249 8.79 11.85 Chip2 T1D_4 T1D TGCATCCTGCCTCTTGCTGGTGGTACTAGCTATGGAAAGCTGACATTT CILPLAGGTSYGKLTF TRAV26-2*01 TRAJ52*01 64.0 2424.0 TGTGCCAGCAGCTTAGGGCAAGCCTACGAGCAGTACTTC CASSLGQAYEQYF TRBV7-8*01 TRBJ2-7*01 21.0 1126.0 CILPLAGGTSYGKLTF_CASSLGQAYEQYF 308 4781 EBNA3A-193-201 EBV 0.62 1022 NEG 156 4625 7 EBV EBNA3A FLRGRAYGL transitional T cells between effector and memory populations PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-B*08:01 B2M MHCI -7698 chip0423_769946 6.31 12.42 Chip2 T1D_6 T1D TGTGCAGGCGGCGGAAGCCAAGGAAATCTCATCTTT CAGGGSQGNLIF TRAV27*01 TRAJ42*01 39.0 1693.0 TGTGCCAGTAGTATCCGGTCGTCTTATGAGCAGTTCTTC CASSIRSSYEQFF TRBV19*01 TRBJ2-1*01 50.0 3903.0 CAGGGSQGNLIF_CASSIRSSYEQFF 1 4986 M1 FLU 0.88 1250 M1 176 4810 7 InfluenzaA M1 GILGFVFTL transitional T cells between effector and memory populations PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*02:01 B2M MHCI -7699 chip0423_640486 16.07 11.89 Chip2 healthy_3 healthy TGTGCCAGCAGCTTGTGGTACAGGGTGGCGACCCAGTACTTC CASSLWYRVATQYF TRBV5-6*01 TRBJ2-5*01 4.0 173.0 _CASSLWYRVATQYF 1 2893 NP44-52 FLU 0.69 474 NP44-52 176 2717 12 InfluenzaA NP CTELKLSDY effector T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*01:01 B2M MHCI -7700 chip0423_518963 -3.28 9.99 Chip2 T1D_6 T1D TGTGCCAGCAGCTTGGGGCAGGGTTATTCACCCCTCCACTTT CASSLGQGYSPLHF TRBV5-5*01 TRBJ1-6*01 22.0 1502.0 _CASSLGQGYSPLHF 1 6281 GFAP-EIR-9 GFAP 0.48 2 GFAP-EIR-9 148 6133 4 HomoSapiens GFAP EIRTQYEAM Naive T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-B*08:01 B2M MHCI -7701 chip0423_328818 13.46 8.56 Chip2 T1D_4 T1D TGCATCGTCAGAGAGGGAGGCGGTGCTGACGGCCTCACCTTT CIVREGGGADGLTF TRAV26-1*01 TRAJ45*01 11.0 317.0 TGTGCCAGCAGCTTAGCGGTCGGAGAAGGGCCCCAGCATTTT CASSLAVGEGPQHF TRBV7-9*01 TRBJ1-5*01 21.0 790.0 CIVREGGGADGLTF_CASSLAVGEGPQHF 68 2782 BZLF1-190-197 EBV 0.97 2156 BZLF1-190-197 173 2609 10 EBV BZLF1 RAKFKQLL effector memory T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-B*08:01 B2M MHCI -7702 chip0423_40364 11.55 10.73 Chip2 T1D_5 T1D TGTGCAATGAGGGCCATTGAGGGGGCAAACAACCTCTTCTTT CAMRAIEGANNLFF TRAV14/DV4*01 TRAJ36*01 49.0 3728.0 CAMRAIEGANNLFF_ 17 4387 BZLF1-190-197 EBV 0.58 2156 NEG 169 4218 9 EBV BZLF1 RAKFKQLL effector memory T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-B*08:01 B2M MHCI -7703 chip0423_776357 7.07 11.83 Chip2 T1D_4 T1D TGCGCCAGCAGCTTGGAGCTGGGGCTTCCCTACGAGCAGTACTTC CASSLELGLPYEQYF TRBV5-1*01 TRBJ2-7*01 35.0 2092.0 _CASSLELGLPYEQYF 8 6658 EBNA3A-158-166 EBV 0.44 444 NEG 143 6515 7 EBV EBNA3A QAKWRLQTL transitional T cells between effector and memory populations PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-B*08:01 B2M MHCI -7704 chip0423_731601 13.34 10.92 Chip2 T1D_4 T1D TGCATCCTCCCCCTTGCTGGTGGTACTAGCTATGGAAAGCTGACATTT CILPLAGGTSYGKLTF TRAV26-2*01 TRAJ52*01 79.0 3989.0 TGCGCCAGCAGCTTGCCCTTCGGGATCGAACCCCAGCATTTT CASSLPFGIEPQHF TRBV5-1*01 TRBJ1-5*01 1.0 33.0 CILPLAGGTSYGKLTF_CASSLPFGIEPQHF 1 3486 EBNA3A-193-201 EBV 0.9 1022 NEG 175 3311 9 EBV EBNA3A FLRGRAYGL effector memory T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-B*08:01 B2M MHCI -7705 chip0423_86691 11.03 8.96 Chip2 T1D_6 T1D TGCATCCTCCCACTTGCTGGTGGTACTAGCTATGGAAAGCTGACATTT CILPLAGGTSYGKLTF TRAV26-2*01 TRAJ52*01 32.0 1969.0 TGTGCCAGCAGCTTGGGACAGGCCTACGAGCAGTACTTC CASSLGQAYEQYF TRBV7-8*01 TRBJ2-7*01 23.0 1426.0 CILPLAGGTSYGKLTF_CASSLGQAYEQYF 308 6291 EBNA3A-193-201 EBV 0.44 1022 NEG 189 6102 10 EBV EBNA3A FLRGRAYGL effector memory T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-B*08:01 B2M MHCI -7706 chip0423_875266 4.8 10.17 Chip2 T1D_4 T1D TGTGCAATGAGAAAGGGGGTGCCCAGAAGCTGGTATTT CAMRKGg?tAQKLVF TRAV14/DV4*01 TRAJ54*01 31.0 2129.0 TGCAGTGCCTCTCGTGACTCCTACGAGCAGTACTTC CSASRDSYEQYF TRBV20-1*01 TRBJ2-7*01 1.0 13.0 CAMRKGg?tAQKLVF_CSASRDSYEQYF 1 3261 EBV-LMP1-1 EBV 0.83 237 NEG 141 3120 6 EBV LMP1 YLLEMLWRL central memory T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*02:01 B2M MHCI -7707 chip0423_437417 12.22 7.22 Chip2 T1D_4 T1D TGTGCCAGCAGCCAAGTCAACAACCCGGGGGATGGCTACACCTTC CASSQVNNPGDGYTF TRBV14*01 TRBJ1-2*01 16.0 467.0 _CASSQVNNPGDGYTF 94 4353 EBNA3A-158-166 EBV 0.78 444 NEG 211 4142 10 EBV EBNA3A QAKWRLQTL effector memory T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-B*08:01 B2M MHCI -7708 chip0423_369965 15.29 8.84 Chip2 T1D_6 T1D TGCATCCTCCCACTTGCTGGTGGTACTAGCTATGGAAAGCTGACATTT CILPLAGGTSYGKLTF TRAV26-2*01 TRAJ52*01 1.0 43.0 TGTGCCAGCAGCTTGGGACAGGCCTACGAGCAGTACTTC CASSLGQAYEQYF TRBV7-8*01 TRBJ2-7*01 22.0 1621.0 CILPLAGGTSYGKLTF_CASSLGQAYEQYF 308 4263 EBNA3A-193-201 EBV 1.0 1022 NEG 176 4087 12 EBV EBNA3A FLRGRAYGL effector T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-B*08:01 B2M MHCI -7709 chip0423_306466 9.78 9.62 Chip2 T1D_5 T1D _ 6746 5872 BZLF1-190-197 EBV 0.64 2156 NEG 176 5696 9 EBV BZLF1 RAKFKQLL effector memory T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-B*08:01 B2M MHCI -7710 chip0423_228564 5.94 12.77 Chip2 healthy_3 healthy TGTGCTGTGAGAAGGCACCAGGCAGGAACTGCTCTGATCTTT CAVRRHQAGTALIF TRAV3*01 TRAJ15*01 56.0 2842.0 CAVRRHQAGTALIF_ 2 6776 NP44-52 FLU 0.87 474 NP44-52 158 6618 7 InfluenzaA NP CTELKLSDY transitional T cells between effector and memory populations PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*01:01 B2M MHCI -7711 chip0423_801668 11.32 6.44 Chip2 T1D_6 T1D TGTGCCAGCAGAGCAAACAGTCTCTACGAGCAGTACTTC CASRANSLYEQYF TRBV2*01 TRBJ2-7*01 35.0 2405.0 _CASRANSLYEQYF 3 8770 NP140-148 FLU 0.55 102 NEG 194 8576 6 InfluenzaA NP HSNLNDATY central memory T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*01:01 B2M MHCI -7712 chip0423_746846 -0.96 6.86 Chip2 healthy_3 healthy TGTGCTACGGAGCCCTGGGGATTCAGGGAGCCCAGAAGCTGGTATTT CATEPWGtt?QGAQKLVF TRAV17*01 TRAJ54*01 1.0 20.0 TGCAGCGCGGGACTAGGCATCGGTGAGCAGTTCTTC CSAGLGIGEQFF TRBV29-1*01 TRBJ2-1*01 128.0 7591.0 CATEPWGtt?QGAQKLVF_CSAGLGIGEQFF 1 6391 PREINS-2-10 INS 0.71 37 PREINS-2-10 174 6217 3 HomoSapiens PREINS ALWMRLLPL Naive T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*02:01 B2M MHCI -7713 chip0423_712781 11.77 10.63 Chip2 T1D_4 T1D TGTGCCAGCAGCTCTGCTGGGGCCGGCAATCAGCCCCAGCGTTTT CASSSAGAGNQPQRF TRBV7-9*01 TRBJ1-5*01 12.0 323.0 _CASSSAGAGNQPQRF 1 4674 BZLF1-190-197 EBV 0.44 2156 NEG 170 4504 9 EBV BZLF1 RAKFKQLL effector memory T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-B*08:01 B2M MHCI -7714 chip0423_508367 -3.72 11.95 Chip2 T1D_4 T1D TGTGCTGTGAGGCCCGTGCGGTGGTGCTACAACCAAGCTCATCTTT CAVRPVRtg??gtATTKLIF TRAV21*01 TRAJ32*01 39.0 2043.0 TGTGCCATCAGTGAGCCGGGACAGGGGAGCCCTGAAGCTTTCTTT CAISEPGQGSPEAFF TRBV10-3*01 TRBJ1-1*01 111.0 4722.0 CAVRPVRtg??gtATTKLIF_CAISEPGQGSPEAFF 1 4861 HCVNS4B-1807-1816 HCV 0.58 74 NEG 137 4724 1 HCV NS4B LLFNILGGWV Naive T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*02:01 B2M MHCI -7715 chip0423_338099 15.62 9.44 Chip2 T1D_5 T1D TGTGCCAGCAGCTGGCTCGGGGATCGGTATAATTCACCCCTCCACTTT CASSWLGDRYNSPLHF TRBV7-9*01 TRBJ1-6*01 15.0 356.0 _CASSWLGDRYNSPLHF 44 2881 BZLF1-190-197 EBV 0.5 2156 NEG 175 2706 12 EBV BZLF1 RAKFKQLL effector T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-B*08:01 B2M MHCI -7716 chip0423_195379 13.73 7.88 Chip2 T1D_6 T1D TGTGCCAGCAGCTTGGGACAGGCCTACGAGCAGTACTTC CASSLGQAYEQYF TRBV7-8*01 TRBJ2-7*01 13.0 532.0 _CASSLGQAYEQYF 175 3416 EBNA3A-193-201 EBV 0.75 1022 NEG 201 3215 10 EBV EBNA3A FLRGRAYGL effector memory T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-B*08:01 B2M MHCI -7717 chip0423_796314 16.09 10.05 Chip2 T1D_6 T1D TCCATCCTCCCACTTGCTGGTCGTACTAGCTATGGAAAGCCGCCATTG SILPLAGRTSYGKPPL TRAV26-2*01 TRAJ52*01 25.0 1224.0 TGTGCCCGCAGGGTAGACAGGGGTTACCTACGAGCGGTACTGC CARRVDR??gVTYERYC TRBV2*01 TRBJ2-7*01 10.0 704.0 SILPLAGRTSYGKPPL_CARRVDR??gVTYERYC 1 3512 EBNA3A-193-201 EBV 0.56 1022 EBNA3A-193-201 187 3325 12 EBV EBNA3A FLRGRAYGL effector T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-B*08:01 B2M MHCI -7718 chip0423_493918 14.79 12.5 Chip2 T1D_5 T1D TGTGCAGCACGGGAAACCTCCTACGACAAGGTGATATTT CAARETSYDKVIF TRAV13-1*01 TRAJ50*01 59.0 5788.0 TGTGCCAGCAGCTTAGTACAGGTCTACGAGCAGTACTTC CASSLVQVYEQYF TRBV7-9*01 TRBJ2-7*01 4.0 165.0 CAARETSYDKVIF_CASSLVQVYEQYF 1 2463 BZLF1-190-197 EBV 0.6 2156 NEG 165 2298 12 EBV BZLF1 RAKFKQLL effector T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-B*08:01 B2M MHCI -7719 chip0423_812088 5.47 10.91 Chip2 T1D_4 T1D TGTGCCAGCAGTTACTCAAGTACAGGGGAGTACTTC CASSYSSTGEYF TRBV6-2*01,TRBV6-3*01 TRBJ2-7*01 13.0 302.0 _CASSYSSTGEYF 32 7100 EBV-LMP1-1 EBV 0.8 237 NEG 160 6940 6 EBV LMP1 YLLEMLWRL central memory T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*02:01 B2M MHCI -7720 chip0423_703343 9.57 10.58 Chip2 T1D_6 T1D TGCGCCAGCAGTCTCCATCCCTGGGGCTGCCTACAATGAGCAGTTCTTC CASSLHPW??gAAYNEQFF TRBV4-3*01 TRBJ2-1*01 190.0 10112.0 _CASSLHPW??gAAYNEQFF 16 5254 EBNA3A-193-201 EBV 0.5 1022 NEG 164 5090 9 EBV EBNA3A FLRGRAYGL effector memory T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-B*08:01 B2M MHCI -7721 chip0423_473387 12.86 8.99 Chip2 T1D_5 T1D TGTGCAGAGATGGAAACCTCCTACGACAAGGTGATATTT CAEMETSYDKVIF TRAV13-2*01 TRAJ50*01 23.0 2076.0 TGTGCCAGCAGCTCCTTAAGCGGGGGGGCAGGAAATGAGCAGTTCTTC CASSSLSGGAGNEQFF TRBV7-9*01 TRBJ2-1*01 78.0 3922.0 CAEMETSYDKVIF_CASSSLSGGAGNEQFF 27 2225 BZLF1-190-197 EBV 0.9 2156 NEG 148 2077 10 EBV BZLF1 RAKFKQLL effector memory T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-B*08:01 B2M MHCI -7722 chip0423_420187 5.73 11.51 Chip2 T1D_6 T1D TGTGCTACGGCGGGGGTTTCCGGATACAGCACCCTCACCTTT CATAGVSGYSTLTF TRAV17*01 TRAJ11*01 27.0 1197.0 TGTGCCAGCAGTAGACAGGGGGGGCACTATGGCTACACCTTC CASSRQGGHYGYTF TRBV6-5*01,TRBV6-1*01 TRBJ1-2*01 2.0 51.0 CATAGVSGYSTLTF_CASSRQGGHYGYTF 1 5694 EBV-LMP2-FLY EBV 0.71 355 NEG 170 5524 7 EBV LMP2 FLYALALLL transitional T cells between effector and memory populations PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*02:01 B2M MHCI -7723 chip0423_418476 14.15 7.63 Chip2 T1D_4 T1D TGTGCCAGCAGCTTAGCGGTCGGAGAAGGGCCCCAGCATTTT CASSLAVGEGPQHF TRBV7-9*01 TRBJ1-5*01 19.0 1115.0 _CASSLAVGEGPQHF 113 3995 BZLF1-190-197 EBV 0.82 2156 BZLF1-190-197 158 3837 10 EBV BZLF1 RAKFKQLL effector memory T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-B*08:01 B2M MHCI -7724 chip0423_241896 5.01 11.17 Chip2 T1D_4 T1D TGTGCAGGGCGGGACACCGGTAACCCGTTCTGTTTT CAGRDTGNPFCF TRAV39*01 TRAJ49*01 2.0 10.0 TGTGCCAGCAGCTTAGCGACGACAGGCTCCTACGAGCAGTACTTC CASSLATTGSYEQYF TRBV7-6*01 TRBJ2-7*01 17.0 1014.0 CAGRDTGNPFCF_CASSLATTGSYEQYF 1 6584 PREINS-2-10 INS 0.75 37 NEG 155 6429 6 HomoSapiens PREINS ALWMRLLPL central memory T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*02:01 B2M MHCI -7725 chip0423_236615 8.49 8.99 Chip2 T1D_5 T1D _ 6746 6367 BZLF1-190-197 EBV 0.7 2156 BZLF1-190-197 159 6208 8 EBV BZLF1 RAKFKQLL effector memory T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-B*08:01 B2M MHCI -7726 chip0423_90633 6.64 11.48 Chip2 healthy_3 healthy TGTGTGGTGAACGGGGAAAATGCCAGACTCATGTTT CVVNGENARLMF TRAV12-1*01 TRAJ31*01 18.0 1072.0 TGTGCCAGCAGTGAAATGTGGGGAGCACCCCTCCACTTT CASSEMWGAPLHF TRBV2*01 TRBJ1-6*01 29.0 1559.0 CVVNGENARLMF_CASSEMWGAPLHF 12 8450 NP44-52 FLU 0.87 474 NP44-52 156 8294 7 InfluenzaA NP CTELKLSDY transitional T cells between effector and memory populations PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*01:01 B2M MHCI -7727 chip0423_302769 10.89 9.3 Chip2 T1D_6 T1D TGCATCCTCCCACTTGCTGGTGGTACTAGCTATGGAAAGCTGACATTT CILPLAGGTSYGKLTF TRAV26-2*01 TRAJ52*01 71.0 3315.0 TGTGCCAGCAGCTTGGGACAGGCCTACGAGCAGTACTTC CASSLGQAYEQYF TRBV7-8*01 TRBJ2-7*01 19.0 1158.0 CILPLAGGTSYGKLTF_CASSLGQAYEQYF 308 6013 EBNA3A-193-201 EBV 1.0 1022 NEG 190 5823 10 EBV EBNA3A FLRGRAYGL effector memory T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-B*08:01 B2M MHCI -7728 chip0423_119073 12.09 9.33 Chip2 T1D_4 T1D TTCATCGTCAGCGAGGGAGGGGGGGCTGTCGGTCTCACCTTT FIVSEGGGAVGLTF TRAV26-1*01 TRAJ45*01 4.0 147.0 TGTGCCAGCAGCTTAGCGGTCGGAGAAGGGCCCCAGCATTTT CASSLAVGEGPQHF TRBV7-9*01 TRBJ1-5*01 50.0 2001.0 FIVSEGGGAVGLTF_CASSLAVGEGPQHF 1 3866 BZLF1-190-197 EBV 0.97 2156 BZLF1-190-197 171 3695 10 EBV BZLF1 RAKFKQLL effector memory T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-B*08:01 B2M MHCI -7729 chip0423_879769 -1.18 10.82 Chip2 T1D_5 T1D TGTGCCAGCAGCCCAACCGTCGGGGACGGAAACACCATATATTTT CASSPTVGDGNTIYF TRBV7-6*01 TRBJ1-3*01 19.0 592.0 _CASSPTVGDGNTIYF 1 5825 BZLF1-190-197 EBV 0.47 2156 BZLF1-190-197 155 5670 3 EBV BZLF1 RAKFKQLL Naive T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-B*08:01 B2M MHCI -7730 chip0423_633682 -2.35 8.46 Chip2 T1D_6 T1D TGTGCAATGAATGACAGCTGGGGGAAATTGCAGTTT CAMNDSWGKLQF TRAV12-3*01 TRAJ24*01 32.0 3949.0 TGTGCCAGCAGCCCGCCCGAATCCGGTGAAGCTTCCTTT CASSPPESGEASF TRBV7-6*01 TRBJ1-1*01 15.0 1018.0 CAMNDSWGKLQF_CASSPPESGEASF 1 6748 G6PC2-LTS-10 IGRP 0.98 59 G6PC2-LTS-10 146 6602 2 HomoSapiens G6PC2 LTSLTILQLY Naive T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*01:01 B2M MHCI -7731 chip0423_673132 5.91 13.72 Chip2 healthy_3 healthy TGTGCTGTGGGTTCTCCTAATTATGGAGGAAGCCAAGGAAATCTCATCTTT CAVGSPNYGGSQGNLIF TRAV36/DV7*01 TRAJ42*01 63.0 1157.0 TGTGCCAGCAGCTTGGAGCCGCATGGCTACACCTTC CASSLEPHGYTF TRBV5-4*01 TRBJ1-2*01 19.0 920.0 CAVGSPNYGGSQGNLIF_CASSLEPHGYTF 2 5342 NP44-52 FLU 0.66 474 NP44-52 139 5203 7 InfluenzaA NP CTELKLSDY transitional T cells between effector and memory populations PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*01:01 B2M MHCI -7732 chip0423_21270 10.4 10.57 Chip2 T1D_4 T1D TGTGCCGTGAAAGGTGGAGGCTTCAAAACTATCTTT CAVKGGGFKTIF TRAV12-2*01 TRAJ9*01 46.0 3774.0 CAVKGGGFKTIF_ 1 5152 BZLF1-190-197 EBV 0.78 2156 BZLF1-190-197 168 4984 9 EBV BZLF1 RAKFKQLL effector memory T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-B*08:01 B2M MHCI -7733 chip0423_156300 -1.76 10.96 Chip2 T1D_4 T1D TGTGCCAGTACGTTTTTCGGTTTGGGTGAAAAACTGTTTTTT CASTFFGLGEKLFF TRBV19*01 TRBJ1-4*01 28.0 1095.0 _CASTFFGLGEKLFF 1 9049 EBNA3A-158-166 EBV 0.69 444 NEG 151 8898 3 EBV EBNA3A QAKWRLQTL Naive T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-B*08:01 B2M MHCI -7734 chip0423_702745 10.73 9.96 Chip2 T1D_5 T1D TGTGCAGCAACGGAAACCTCCTACGACAAGGTGATATTT CAATETSYDKVIF TRAV13-1*01 TRAJ50*01 24.0 1258.0 TGTGCCAGCAGTCCCCCGGGGAGAAATGAAAAACTGTTTTTT CASSPPGRNEKLFF TRBV12-3*01,TRBV12-4*01 TRBJ1-4*01 24.0 874.0 CAATETSYDKVIF_CASSPPGRNEKLFF 34 5296 BZLF1-190-197 EBV 0.81 2156 BZLF1-190-197 165 5131 9 EBV BZLF1 RAKFKQLL effector memory T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-B*08:01 B2M MHCI -7735 chip0423_692540 -3.96 10.21 Chip2 healthy_3 healthy TGTGCAGCAAGCGCCGGTAACCAGTTCTATTTT CAASAGNQFYF TRAV29/DV5*01 TRAJ49*01 22.0 2085.0 TGTGCCAGCAGACCGGGACAGTGGTACGAGCAGTACTTC CASRPGQWYEQYF TRBV27*01 TRBJ2-7*01 25.0 1325.0 CAASAGNQFYF_CASRPGQWYEQYF 1 5361 NP140-148 FLU 0.61 102 NEG 158 5203 2 InfluenzaA NP HSNLNDATY Naive T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*01:01 B2M MHCI -7736 chip0423_633032 12.22 7.88 Chip2 T1D_5 T1D TGTGCCAGCAGCTTAGTAATGGGCAATGAGCAGTTCTTC CASSLVMGNEQFF TRBV7-2*01 TRBJ2-1*01 39.0 2197.0 _CASSLVMGNEQFF 2 3214 BZLF1-190-197 EBV 0.67 2156 BZLF1-190-197 160 3054 10 EBV BZLF1 RAKFKQLL effector memory T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-B*08:01 B2M MHCI -7737 chip0423_477034 -0.53 10.75 Chip2 T1D_5 T1D _ 6746 5568 gp160-586-593 HIV 0.47 30 NEG 159 5409 3 HIV-1 gp160 YLKDQQLL Naive T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-B*08:01 B2M MHCI -7738 chip0423_414075 -2.03 10.31 Chip2 T1D_6 T1D TGTGCAATGAGCACTGACAGCTGGGGGAAATTGCAGTCT CAMSTDSWGKLQS TRAV12-3*01 TRAJ24*01 47.0 3432.0 TGTGCCAGCCGAACTTCGCCCTTCTCGCCGACTGATAACTATGGCTACACCTTC CASRTSPFSPTDNYGYTF TRBV6-2*01,TRBV6-3*01 TRBJ1-2*01 18.0 525.0 CAMSTDSWGKLQS_CASRTSPFSPTDNYGYTF 1 6201 PGT-178 PGT 0.55 1480 NEG 148 6053 3 HomoSapiens PGT LLAGIGTVPI Naive T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*02:01 B2M MHCI -7739 chip0423_226491 13.21 10.65 Chip2 T1D_5 T1D TGTGCTGTGGTGCCTTCTGGGGGTTACCCGAAAGTTACCTTT CAVVPSGGYPKVTF TRAV8-3*01 TRAJ13*01 2.0 32.0 TGTGCCATCAGTGAGCTCCACTCGGACGGCCAAGAGACCCAGTACTTC CAISELHSDGQETQYF TRBV10-3*01 TRBJ2-5*01 79.0 3855.0 CAVVPSGGYPKVTF_CAISELHSDGQETQYF 1 3651 BZLF1-190-197 EBV 0.8 2156 NEG 169 3482 9 EBV BZLF1 RAKFKQLL effector memory T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-B*08:01 B2M MHCI -7740 chip0423_795083 10.49 11.37 Chip2 healthy_4 healthy TGTGCCAGCAGTTGGACAGGGTCCTACGAGCAGTACTTC CASSWTGSYEQYF TRBV6-2*01,TRBV6-3*01 TRBJ2-7*01 26.0 1411.0 _CASSWTGSYEQYF 2 4443 EBV-BRLF1 EBV 0.91 1264 NEG 177 4266 9 EBV BRLF1 YVLDHLIVV effector memory T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*02:01 B2M MHCI -7741 chip0423_805119 6.49 12.11 Chip2 T1D_6 T1D TGTGCTACGGAAGGGGGTTCAGGATACAGCACCCTCACCTTT CATEGGSGYSTLTF TRAV17*01 TRAJ11*01 72.0 3468.0 CATEGGSGYSTLTF_ 2 4766 EBV-LMP2-FLY EBV 1.0 355 NEG 172 4594 7 EBV LMP2 FLYALALLL transitional T cells between effector and memory populations PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*02:01 B2M MHCI -7742 chip0423_343975 9.64 7.18 Chip2 T1D_5 T1D TGTGCCAGCAGTCCGCCCGGGTCTAATGAAAAACTGTTTTTT CASSPPGSNEKLFF TRAV9-2*01 TRAJ5*01,TRAJ4*01 2.0 6.0 TGTGCCAGCAGTCCGCCCGGGTCTAATGAAAAACTGTTTTTT CASSPPGSNEKLFF TRBV12-3*01,TRBV12-4*01 TRBJ1-4*01 79.0 3248.0 CASSPPGSNEKLFF_CASSPPGSNEKLFF 2 5975 BZLF1-190-197 EBV 0.62 2156 NEG 163 5812 10 EBV BZLF1 RAKFKQLL effector memory T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-B*08:01 B2M MHCI -7743 chip0423_727654 -1.49 7.74 Chip2 T1D_6 T1D TGTGCAATGAGCGGCGACTACAAGCTCAGCTTT CAMSGDYKLSF TRAV12-3*01 TRAJ20*01 7.0 646.0 TGTGCTGGGACCACGGGAGGAGGCCCCCCCCTCACCTTT CAGTTGGGPPLTF TRAV12-3*01 TRAJ10*01 4.0 380.0 0.29 TGTGCCAGCAGTTACTCGGTTTCGGTTCGGGGGGTTGACACTGAAGCTTTCTTT CASSYSVSVRGVDTEAFF TRBV6-2*01,TRBV6-3*01 TRBJ1-1*01 21.0 747.0 CAMSGDYKLSF_CASSYSVSVRGVDTEAFF 1 9442 PGT-178 PGT 0.85 1480 PGT-178 134 9308 3 HomoSapiens PGT LLAGIGTVPI Naive T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*02:01 B2M MHCI -7744 chip0423_595457 -0.7 9.9 Chip2 healthy_3 healthy CGCATCGGCGTCTACCGCGGACGCCCCCGACCTCTCATCTTT RIGVYRGRPRPLIF TRAV26-1*01 TRAJ42*01 2.0 130.0 TGTGCCAGCAGCTTTTCAGGGTTCGGGGAGCTGTTTTTT CASSFSGFGELFF TRBV13*01 TRBJ2-2*01 22.0 1330.0 RIGVYRGRPRPLIF_CASSFSGFGELFF 1 7933 ZNT8-115-123 ZNT8 0.87 74 ZNT8-115-123 149 7784 3 HomoSapiens ZNT8 LLSLFSLWL Naive T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*02:01 B2M MHCI -7745 chip0423_245472 11.89 8.67 Chip2 T1D_5 T1D TGTGCCAGCAGTCCCCCCGGGGCCAACGTCCTGACTTTC CASSPPGANVLTF TRBV12-3*01,TRBV12-4*01 TRBJ2-6*01 30.0 2286.0 _CASSPPGANVLTF 2 3179 BZLF1-190-197 EBV 0.91 2156 BZLF1-190-197 173 3006 10 EBV BZLF1 RAKFKQLL effector memory T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-B*08:01 B2M MHCI -7746 chip0423_2105 -3.13 9.19 Chip2 T1D_4 T1D TGCAGCGTTGAAGGGGAGGGACAGATTTACAATGAGCAGTTCTTC CSVEGEGQIYNEQFF TRBV29-1*01 TRBJ2-1*01 131.0 7557.0 _CSVEGEGQIYNEQFF 1 7914 GAG-433-442 HIV 0.5 19 NEG 149 7765 2 HIV-1 GAG FLGKIWPSYK Naive T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*02:01 B2M MHCI -7747 chip0423_445380 12.63 6.49 Chip2 T1D_6 T1D TGCATCCTCCCCCTTGCTGGTCGTCCTCGCTATGGCCAGCTGACCTTT CILPLAGRPRYGQLTF TRAV26-2*01 TRAJ52*01 12.0 696.0 TGTGCCAGCAGCCAAGTTCGCGGCGGGTACGAGCAGTACTTC CASSQVRGGYEQYF TRBV3-1*01 TRBJ2-7*01 1.0 58.0 CILPLAGRPRYGQLTF_CASSQVRGGYEQYF 1 7474 EBNA3A-193-201 EBV 0.59 1022 EBNA3A-193-201 191 7283 10 EBV EBNA3A FLRGRAYGL effector memory T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-B*08:01 B2M MHCI -7748 chip0423_39387 6.06 9.99 Chip2 T1D_4 T1D TGCATCGTCAGAGTCCCCCGCCCGACCGGCCCTGCCAGTAAACTCACCTTT CIVRVPRPTGPASKLTF TRAV26-1*01 TRAJ44*01 29.0 704.0 TGTGCCAGCAGCCAAGGACAGGCCTACGAGCAGTACTTC CASSQGQAYEQYF TRBV7-8*01 TRBJ2-7*01 48.0 2698.0 CIVRVPRPTGPASKLTF_CASSQGQAYEQYF 1 7260 EBNA3A-193-201 EBV 0.83 1022 EBNA3A-193-201 196 7064 6 EBV EBNA3A FLRGRAYGL central memory T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-B*08:01 B2M MHCI -7749 chip0423_46232 -3.97 9.05 Chip2 T1D_6 T1D TGTGCCAGCAGCTTCCGGGACAGGGCCCAAGAGACCCAGTACTTC CASSFRDRAQETQYF TRBV9*01 TRBJ2-5*01 30.0 2796.0 _CASSFRDRAQETQYF 1 5932 ZNT8-16-24 ZNT8 0.83 39 NEG 154 5778 2 HomoSapiens ZNT8 KMYAFTLES Naive T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*02:01 B2M MHCI -7750 chip0423_180669 -4.02 8.24 Chip2 healthy_3 healthy TGCAGTGCTAGGACAGGGCAGACCTACGAGCAGTACTTC CSARTGQTYEQYF TRBV20-1*01 TRBJ2-7*01 81.0 6001.0 _CSARTGQTYEQYF 1 6587 M1 FLU 0.5 1250 NEG 149 6438 2 InfluenzaA M1 GILGFVFTL Naive T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*02:01 B2M MHCI -7751 chip0423_585897 -1.62 11.79 Chip2 T1D_4 T1D TGTGCTGTGCGGCATGCCGGCGACCTGCTCCCCTTT CAVRHAGDLLPF TRAV3*01 TRAJ39*01 8.0 683.0 TGTGCCAGCAACCTACAGGGGGCAAGCAATCAGCCCCAGCATTTT CASNLQGASNQPQHF TRBV28*01 TRBJ1-5*01 21.0 1097.0 CAVRHAGDLLPF_CASNLQGASNQPQHF 1 5121 MART1-A28L MART1 0.62 84 MART1-A28L 153 4968 3 HomoSapiens MART1 ALGIGILTV Naive T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*02:01 B2M MHCI -7752 chip0423_376496 -4.01 9.45 Chip2 T1D_4 T1D TGTGCAATGAGCTTATCTAACTTTGGAAATGAGAAATTAACCTTT CAMSLSNFGNEKLTF TRAV12-3*01 TRAJ48*01 68.0 2003.0 CAMSLSNFGNEKLTF_ 16 4196 PGT-178 PGT 0.73 1480 PGT-178 134 4062 2 HomoSapiens PGT LLAGIGTVPI Naive T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*02:01 B2M MHCI -7753 chip0423_781427 15.39 10.92 Chip2 T1D_5 T1D TGTGCAGCAAGTGAAACCTCCTACGACAAGGTGATATTT CAASETSYDKVIF TRAV13-1*01 TRAJ50*01 16.0 2005.0 TGTGCCAGCAGCCGCCTCGGGGTTGGCACCTGGGATGAGCAGTTCTTC CASSRLGVGTWDEQFF TRBV7-9*01 TRBJ2-1*01 20.0 1351.0 CAASETSYDKVIF_CASSRLGVGTWDEQFF 3 2830 BZLF1-190-197 EBV 0.83 2156 NEG 143 2687 12 EBV BZLF1 RAKFKQLL effector T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-B*08:01 B2M MHCI -7754 chip0423_704366 11.61 8.32 Chip2 T1D_4 T1D TGTGCTGTGAGAGACACGACGTGGGATGACAAGATCATCTTT CAVRDTTWDDKIIF TRAV3*01 TRAJ30*01 28.0 1039.0 TGTGCCAGCAGCTTAGGAGGGGGAGAGGGGGCCAGTGAGCAGCTCTTC CASSLGGGEGASEQLF TRBV7-6*01 TRBJ2-1*01 3.0 82.0 CAVRDTTWDDKIIF_CASSLGGGEGASEQLF 1 3891 EBNA3A-193-201 EBV 0.67 1022 NEG 154 3737 10 EBV EBNA3A FLRGRAYGL effector memory T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-B*08:01 B2M MHCI -7755 chip0423_415565 -2.65 13.58 Chip2 T1D_6 T1D TGTGCCAGCAGTTGGGCAGGAGGGGAGCAGTACTTC CASSWAGGEQYF TRBV12-3*01,TRBV12-4*01 TRBJ2-7*01 12.0 845.0 _CASSWAGGEQYF 1 3705 MART1-ALA MART1 0.75 269 NEG 159 3546 1 HomoSapiens MART1 ALAGIGILTV Naive T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*02:01 B2M MHCI -7756 chip0423_817263 15.48 10.98 Chip2 T1D_5 T1D TGTGCAGCGGCGGAAACCTCCTACGACAAGGTGATATTT CAAAETSYDKVIF TRAV13-1*01 TRAJ50*01 50.0 2988.0 TGTGCCAGCCAACTAGCGGGAGGCACCGGGGAGCTGTTTTTT CASQLAGGTGELFF TRBV24-1*01 TRBJ2-2*01 25.0 1036.0 CAAAETSYDKVIF_CASQLAGGTGELFF 131 1625 BZLF1-190-197 EBV 1.0 2156 NEG 160 1465 12 EBV BZLF1 RAKFKQLL effector T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-B*08:01 B2M MHCI -7757 chip0423_558325 11.28 9.71 Chip2 T1D_4 T1D TGTGCCAGCAGCCAAGTCAACAACCCGGGGGATGGCTACACCTTC CASSQVNNPGDGYTF TRBV14*01 TRBJ1-2*01 6.0 159.0 _CASSQVNNPGDGYTF 94 5827 EBNA3A-158-166 EBV 0.63 444 EBNA3A-158-166 213 5614 9 EBV EBNA3A QAKWRLQTL effector memory T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-B*08:01 B2M MHCI -7758 chip0423_503845 11.1 12.3 Chip2 T1D_4 T1D TGTGCAGCAAGTGAAACCTCCTACGACAAGGTGATATTT CAASETSYDKVIF TRAV13-1*01 TRAJ50*01 24.0 1703.0 CAASETSYDKVIF_ 51 3140 BZLF1-190-197 EBV 0.5 2156 NEG 187 2953 11 EBV BZLF1 RAKFKQLL effector T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-B*08:01 B2M MHCI -7759 chip0423_365375 11.5 8.77 Chip2 T1D_6 T1D TGCATCCTCCCACTTGCTGGTGGTACTAGCTATGGAAAGCTGACATTT CILPLAGGTSYGKLTF TRAV26-2*01 TRAJ52*01 4.0 385.0 TGTGCCAGCAGCTTGGGACAGGCCTACGAGCAGTACTTC CASSLGQAYEQYF TRBV7-8*01 TRBJ2-7*01 16.0 859.0 CILPLAGGTSYGKLTF_CASSLGQAYEQYF 308 4252 EBNA3A-193-201 EBV 0.83 1022 NEG 195 4057 10 EBV EBNA3A FLRGRAYGL effector memory T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-B*08:01 B2M MHCI -7760 chip0423_593252 -3.89 11.69 Chip2 T1D_6 T1D TGTGCAATGAGCATATCTAACTTTGGAAATGAGAAATTAACCTTT CAMSISNFGNEKLTF TRAV12-3*01 TRAJ48*01 20.0 607.0 TGTGCCAGCAGTTTCAGTCTTGCGGGGGCGGGGAATGAGCAGTTCTTC CASSFSLAGAGNEQFF TRBV28*01 TRBJ2-1*01 5.0 82.0 CAMSISNFGNEKLTF_CASSFSLAGAGNEQFF 1 5010 PGT-178 PGT 0.59 1480 PGT-178 156 4854 1 HomoSapiens PGT LLAGIGTVPI Naive T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*02:01 B2M MHCI -7761 chip0423_732908 11.25 7.47 Chip2 T1D_4 T1D TGTGCCGTGAATGCTTTTTCTGGTGGCTACAATAAGCTGATTTTT CAVNAFSGGYNKLIF TRAV8-1*01 TRAJ4*01 67.0 3544.0 TGTGCCAGCAGCCAGGAGGACTCCCGTTGGGAGCAGTTCTTC CASSQEDSRWEQFF TRBV14*01 TRBJ2-1*01 22.0 1069.0 CAVNAFSGGYNKLIF_CASSQEDSRWEQFF 3 6004 EBV-LMP1-1 EBV 0.67 237 NEG 189 5815 10 EBV LMP1 YLLEMLWRL effector memory T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*02:01 B2M MHCI -7762 chip0423_627063 11.27 7.6 Chip2 T1D_5 T1D TGTGCCAGCAGCTTACCCACCTTCTACGAGCAGTACTTC CASSLPTFYEQYF TRBV7-2*01 TRBJ2-7*01 29.0 1229.0 _CASSLPTFYEQYF 1 3897 BZLF1-190-197 EBV 0.44 2156 NEG 177 3720 10 EBV BZLF1 RAKFKQLL effector memory T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-B*08:01 B2M MHCI -7763 chip0423_118071 11.59 8.13 Chip2 T1D_6 T1D TGCGCCAGCAGTGACATTAGGGAGGGGCAGGGTGAAGCTTTCTTT CASSDIREGQGEAFF TRBV10-2*01 TRBJ1-1*01 39.0 1672.0 _CASSDIREGQGEAFF 37 6697 EBNA3A-158-166 EBV 1.0 444 NEG 178 6519 10 EBV EBNA3A QAKWRLQTL effector memory T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-B*08:01 B2M MHCI -7764 chip0423_874019 12.34 10.99 Chip2 T1D_5 T1D _ 6746 4107 BZLF1-190-197 EBV 0.47 2156 NEG 188 3919 9 EBV BZLF1 RAKFKQLL effector memory T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-B*08:01 B2M MHCI -7765 chip0423_45069 -0.82 6.74 Chip2 T1D_6 T1D TGTGCAATGAGCCTATCTAACTTTGGAAATGAGAAATTAACCTTT CAMSLSNFGNEKLTF TRAV12-3*01 TRAJ48*01 181.0 5861.0 TGTGCCAGCAGCGCACAGGGGGAAGGGGAAAAACTGTTTTTT CASSAQGEGEKLFF TRBV12-3*01,TRBV12-4*01 TRBJ1-4*01 136.0 5323.0 CAMSLSNFGNEKLTF_CASSAQGEGEKLFF 1 7696 PGT-178 PGT 0.79 1480 PGT-178 175 7521 3 HomoSapiens PGT LLAGIGTVPI Naive T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*02:01 B2M MHCI -7766 chip0423_305579 13.35 6.68 Chip2 T1D_4 T1D TGTGCCAGCAGCTTAACGGTTCTGGCAGGTCCAAACACTGAAGCTTTCTTT CASSLTVLAGPNTEAFF TRBV7-3*01 TRBJ1-1*01 19.0 597.0 _CASSLTVLAGPNTEAFF 32 3778 BZLF1-190-197 EBV 0.74 2156 BZLF1-190-197 176 3602 10 EBV BZLF1 RAKFKQLL effector memory T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-B*08:01 B2M MHCI -7767 chip0423_38242 -1.82 6.94 Chip2 T1D_6 T1D TGCGCCAGCAGCCAAAGAGCGAACACCGGGGAGCTGTTTTTT CASSQRANTGELFF TRBV4-1*01 TRBJ2-2*01 33.0 1291.0 _CASSQRANTGELFF 1 10584 LMP2A-CPL EBV 0.42 44 NEG 151 10433 3 EBV LMP2A CPLSKILL Naive T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-B*08:01 B2M MHCI -7768 chip0423_414108 15.61 9.94 Chip2 T1D_5 T1D TGTGCAGCAATGGAAACCTCCTACGACAAGGTGATATTT CAAMETSYDKVIF TRAV13-1*01 TRAJ50*01 30.0 2023.0 TGTGCCAGCAGCGTCCCGGCCACAGGGGGGACCGGGGAGCTGTTTTTT CASSVPATGGTGELFF TRBV9*01 TRBJ2-2*01 44.0 2155.0 CAAMETSYDKVIF_CASSVPATGGTGELFF 4 4698 BZLF1-190-197 EBV 0.62 2156 NEG 167 4531 12 EBV BZLF1 RAKFKQLL effector T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-B*08:01 B2M MHCI -7769 chip0423_719457 -1.0 6.95 Chip2 healthy_3 healthy TGTGCCAGCAGCTTAGTAACCTCGCAAGAGACCCAGTACTTC CASSLVTSQETQYF TRBV11-3*01 TRBJ2-5*01 21.0 1098.0 _CASSLVTSQETQYF 1 6628 GP160-311-320 HIV 0.4 109 NEG 131 6497 3 HIV-1 GP160 RGPGRAFVTI Naive T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*02:01 B2M MHCI -7770 chip0423_460288 -1.7 11.8 Chip2 T1D_6 T1D TGCAGCGTCCCCTCGGGCCCCGGGTATGGCTACACCTTC CSVPSGPGYGYTF TRBV29-1*01 TRBJ1-2*01 5.0 72.0 _CSVPSGPGYGYTF 1 4332 IGRP-152-160-WLI IGRP 0.62 27 NEG 152 4180 3 HomoSapiens IGRP FLWSVFWLI Naive T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*02:01 B2M MHCI -7771 chip0423_404252 -2.73 9.56 Chip2 healthy_4 healthy TGTGCAATGACCCTTGGGCAGGGAGCCCAGAAGCTGGTATTT CAMTLGQGAQKLVF TRAV12-3*01 TRAJ54*01 1.0 83.0 TGCAGCGTTGATAGTCAGCCGATAGGGGAGACCCAGTACTTC CSVDSQPIGETQYF TRBV29-1*01 TRBJ2-5*01 142.0 9304.0 CAMTLGQGAQKLVF_CSVDSQPIGETQYF 1 4735 PGT-178 PGT 1.0 1480 PGT-178 165 4570 3 HomoSapiens PGT LLAGIGTVPI Naive T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*02:01 B2M MHCI -7772 chip0423_846147 5.99 13.83 Chip2 healthy_3 healthy TGTGCCAGTAGTGGCAGGTCAACCGGGGAGCTGTTTTTT CASSGRSTGELFF TRBV19*01 TRBJ2-2*01 9.0 423.0 _CASSGRSTGELFF 2 4562 M1 FLU 0.54 1250 NEG 145 4417 7 InfluenzaA M1 GILGFVFTL transitional T cells between effector and memory populations PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*02:01 B2M MHCI -7773 chip0423_527597 11.04 9.7 Chip2 T1D_5 T1D TGTGCAGCAACGGAAACCTCCTACGACAAGGTGATATTT CAATETSYDKVIF TRAV13-1*01 TRAJ50*01 5.0 252.0 TGTGCCAGCAGCCCTCTTGGGAGCAATGAAAAACTGTTTTTT CASSPLGSNEKLFF TRBV7-9*01 TRBJ1-4*01 38.0 1250.0 CAATETSYDKVIF_CASSPLGSNEKLFF 25 4298 BZLF1-190-197 EBV 0.89 2156 NEG 167 4131 9 EBV BZLF1 RAKFKQLL effector memory T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-B*08:01 B2M MHCI -7774 chip0423_457235 -3.57 10.5 Chip2 T1D_5 T1D TGTGCCAGTAGTGTAGGTGTAAGGAACACTGAAGCTTTCTTT CASSVGVRNTEAFF TRBV19*01 TRBJ1-1*01 20.0 867.0 _CASSVGVRNTEAFF 1 5600 GAD2-MMI-8 GAD65 0.83 40 NEG 166 5434 2 HomoSapiens GAD2 MMIARFKM Naive T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-B*08:01 B2M MHCI -7775 chip0423_500532 -1.39 10.53 Chip2 T1D_4 T1D TGTGCTCTGAGTGAGGCGTATGGTAACCAGGGAGGAAAGCTTATCTTC CALSEAYGNQGGKLIF TRAV19*01 TRAJ23*01 15.0 396.0 TGTGCCAGCAGCGCTAGCGGGGGCCCCTTCAATGAGCAGTTCTTC CASSASGGPFNEQFF TRBV9*01 TRBJ2-1*01 47.0 3255.0 CALSEAYGNQGGKLIF_CASSASGGPFNEQFF 1 6658 EBNA3A-158-166 EBV 0.45 444 NEG 145 6513 3 EBV EBNA3A QAKWRLQTL Naive T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-B*08:01 B2M MHCI -7776 chip0423_265897 14.23 10.97 Chip2 T1D_5 T1D TGTGCAATTGAGGGCCATTGAGGGGGCAAACAACCTCTTCTTT CAIEGH*??gGANNLFF TRAV14/DV4*01 TRAJ36*01 8.0 356.0 TGCGCCAGCAGCCTCAGTTCGGGGGGCCGTGGCGAGCAGTACTTC CASSLSSGGRGEQYF TRBV4-1*01 TRBJ2-7*01 23.0 1200.0 CAIEGH*??gGANNLFF_CASSLSSGGRGEQYF 1 4518 BZLF1-190-197 EBV 0.59 2156 NEG 159 4359 12 EBV BZLF1 RAKFKQLL effector T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-B*08:01 B2M MHCI -7777 chip0423_647007 12.8 11.0 Chip2 T1D_5 T1D TGTGCAGCGGCGGAAACCTCCTACGACAAGGTGATATTT CAAAETSYDKVIF TRAV13-1*01 TRAJ50*01 10.0 946.0 CAAAETSYDKVIF_ 32 3264 BZLF1-190-197 EBV 0.75 2156 NEG 160 3104 9 EBV BZLF1 RAKFKQLL effector memory T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-B*08:01 B2M MHCI -7778 chip0423_635873 11.87 7.41 Chip2 T1D_5 T1D TGTGCCAGCCTGCATACGCAGCCTAACACTGAAGCTTTCTTT CASLHTQPNTEAFF TRAV9-2*01 TRAJ40*01 4.0 18.0 TGTGCCAGCCTGCATACGCAGACTAACACTGAAGCTTTCTTT CASLHTQTNTEAFF TRBV12-3*01,TRBV12-4*01 TRBJ1-1*01 80.0 4397.0 CASLHTQPNTEAFF_CASLHTQTNTEAFF 1 4440 BZLF1-190-197 EBV 0.62 2156 NEG 138 4302 10 EBV BZLF1 RAKFKQLL effector memory T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-B*08:01 B2M MHCI -7779 chip0423_37438 -0.52 6.9 Chip2 T1D_6 T1D TGTGCCGTGAACACAGGCTTTCAGAAACTTGTATTT CAVNTGFQKLVF TRAV12-2*01 TRAJ8*01 28.0 2052.0 TGCAGCGTTAAGGGGGGGGGCTACAATGAGCAGTTCTTC CSVKGGGYNEQFF TRBV29-1*01 TRBJ2-1*01 12.0 460.0 CAVNTGFQKLVF_CSVKGGGYNEQFF 1 7176 IAPP-ILK-8 IAPP 0.74 20 IAPP-ILK-8 157 7019 3 HomoSapiens IAPP ILKLQVFL Naive T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-B*08:01 B2M MHCI -7780 chip0423_795569 10.88 8.66 Chip2 T1D_4 T1D _ 6746 8573 EBV-LMP1-1 EBV 0.79 237 NEG 167 8406 10 EBV LMP1 YLLEMLWRL effector memory T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*02:01 B2M MHCI -7781 chip0423_718146 13.39 11.55 Chip2 T1D_5 T1D TGTGCAGTGAGTGTAGGGCTAGGGTGTCCGGTATGTTGTATTT CAVSVGL??gGVRYVVF TRAV14/DV4*01 TRAJ13*01 5.0 26.0 CAVSVGL??gGVRYVVF_ 1 3590 BZLF1-190-197 EBV 0.77 2156 BZLF1-190-197 168 3422 9 EBV BZLF1 RAKFKQLL effector memory T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-B*08:01 B2M MHCI -7782 chip0423_282251 -1.93 9.19 Chip2 T1D_4 T1D TGTGCAGAGAATTCAGGATACAGCACCCTCACCTTT CAENSGYSTLTF TRAV13-2*01 TRAJ11*01 24.0 2134.0 TGTGCCAGCTCACCCCCCCGGCAAGAGACCCAGTACTTC CASSPPRQETQYF TRBV18*01 TRBJ2-5*01 37.0 2665.0 CAENSGYSTLTF_CASSPPRQETQYF 1 8707 GFAP-HLK-8 GFAP 1.0 28 GFAP-HLK-8 150 8557 3 HomoSapiens GFAP HLKRNIVV Naive T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-B*08:01 B2M MHCI -7783 chip0423_255399 -1.9 8.75 Chip2 T1D_6 T1D TGCTATGCGGGGCGCCCGGTGCTGGGCACAACCGTGAGCTGGTTTGG CYAGRPVct?GHNRELVW TRAV1-1*01 TRAJ38*01 7.0 129.0 CYAGRPVct?GHNRELVW_ 1 6131 ZNT8-VTD-9 ZNT8 0.91 65 ZNT8-VTD-9 180 5951 3 HomoSapiens ZNT8 VTDAAHLLI Naive T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*01:01 B2M MHCI -7784 chip0423_633059 10.82 7.92 Chip2 T1D_4 T1D TGTGCCAGCAGCCAAGTCAACAACCCGGGGGATGGCTACACCTTC CASSQVNNPGDGYTF TRBV14*01 TRBJ1-2*01 4.0 126.0 _CASSQVNNPGDGYTF 94 5066 EBNA3A-158-166 EBV 0.49 444 EBNA3A-158-166 171 4895 10 EBV EBNA3A QAKWRLQTL effector memory T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-B*08:01 B2M MHCI -7785 chip0423_556411 10.5 8.36 Chip2 T1D_5 T1D TGTGCAGCAAGTGAAACCTCCTACGACAAGGTGATATTT CAASETSYDKVIF TRAV13-1*01 TRAJ50*01 63.0 5376.0 TGTGCCAGCAGCTTACTGGGGCTCGAGGCCTACGAGCAGTACTTC CASSLLGLEAYEQYF TRBV7-9*01 TRBJ2-7*01 90.0 4652.0 CAASETSYDKVIF_CASSLLGLEAYEQYF 1 5711 BZLF1-190-197 EBV 0.67 2156 NEG 180 5531 10 EBV BZLF1 RAKFKQLL effector memory T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-B*08:01 B2M MHCI -7786 chip0423_330194 10.81 8.79 Chip2 T1D_4 T1D TGTGCTGTGAGTGATGGAGAAGGAGCCCAGAAGCTGGTATTT CAVSDGEGAQKLVF TRAV8-6*01 TRAJ54*01 2.0 42.0 TGTGCCAGCAGCCTAACGGTTCTGGCAGGTCCAAACACTGAAGCTTTCTTT CASSLTVLAGPNTEAFF TRBV7-3*01 TRBJ1-1*01 35.0 1161.0 CAVSDGEGAQKLVF_CASSLTVLAGPNTEAFF 44 4823 BZLF1-190-197 EBV 0.87 2156 BZLF1-190-197 180 4643 10 EBV BZLF1 RAKFKQLL effector memory T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-B*08:01 B2M MHCI -7787 chip0423_325297 15.29 12.08 Chip2 T1D_5 T1D TGTGCAGCAACCGAAACCTCCTACGACAAGGTGATATTT CAATETSYDKVIF TRAV13-1*01 TRAJ50*01 17.0 1187.0 TGTGCCAGCAGCCCATTGGGGATTCCAGCGAACACTGAAGCTTTCTTT CASSPLGIPANTEAFF TRBV7-9*01 TRBJ1-1*01 72.0 2369.0 CAATETSYDKVIF_CASSPLGIPANTEAFF 1 2245 BZLF1-190-197 EBV 0.56 2156 NEG 196 2049 12 EBV BZLF1 RAKFKQLL effector T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-B*08:01 B2M MHCI -7788 chip0423_255213 -2.64 8.87 Chip2 T1D_5 T1D TGTGCGGTGGGGGGGGCCTCCGGCGGCAGCTACATACCTACATTT CAVGGASGGSYIPTF TRAV14/DV4*01 TRAJ6*01 35.0 980.0 TGTGCCCTGGACGGGCGGAGCTCCTATAATTCACCCCTCCACTTT CALDGRSSYNSPLHF TRBV30*01 TRBJ1-6*01 15.0 307.0 CAVGGASGGSYIPTF_CALDGRSSYNSPLHF 1 5625 GAD2-SLK-9 GAD65 0.47 2 NEG 151 5474 3 HomoSapiens GAD2 SLKKGAAAL Naive T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-B*08:01 B2M MHCI -7789 chip0423_792486 10.74 6.49 Chip2 T1D_6 T1D TGCAGCGCCGGCAGGGACGGGACTAATGAAAAACTGTTTTTT CSAGRDGTNEKLFF TRBV29-1*01 TRBJ1-4*01 244.0 11562.0 _CSAGRDGTNEKLFF 159 7493 EBV-BLMF1 EBV 0.42 2531 NEG 229 7264 10 EBV BLMF1 GLCTLVAML effector memory T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*02:01 B2M MHCI -7790 chip0423_439030 11.88 10.71 Chip2 T1D_4 T1D TGTGTGGTGAACTTCGACACCGACAAGCTCATCTTT CVVNFDTDKLIF TRAV12-1*01 TRAJ34*01 24.0 2042.0 TGCAGCGGGGGACAGGGCCCCTACGAGCAGTACTTC CSGGQGPYEQYF TRBV29-1*01 TRBJ2-7*01 122.0 10515.0 CVVNFDTDKLIF_CSGGQGPYEQYF 1 5070 BZLF1-190-197 EBV 0.48 2156 NEG 170 4900 9 EBV BZLF1 RAKFKQLL effector memory T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-B*08:01 B2M MHCI -7791 chip0423_280885 -3.37 13.1 Chip2 T1D_4 T1D TGTGCAATGGGAGGAAGCTACATACCTACATTT CAMGGSYIPTF TRAV12-3*01 TRAJ6*01 31.0 2838.0 CAMGGSYIPTF_ 1 3784 PGT-178 PGT 0.76 1480 PGT-178 157 3627 1 HomoSapiens PGT LLAGIGTVPI Naive T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*02:01 B2M MHCI -7792 chip0423_118158 5.06 11.57 Chip2 T1D_4 T1D TGTGCCGTGAGCCCAGGAAACACACCTCTTGTCTTT CAVSPGNTPLVF TRAV12-2*01 TRAJ29*01 41.0 4061.0 TGCAGTGCTAGTGAGGGGGGTTATGAGCAGTTCTTC CSASEGGYEQFF TRBV20-1*01 TRBJ2-1*01 2.0 246.0 CAVSPGNTPLVF_CSASEGGYEQFF 1 4654 CVB3-P3A CVB 0.77 77 CVB3-P3A 151 4503 6 CoxsackievirusB P3A GIIYIIYKL central memory T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*02:01 B2M MHCI -7793 chip0423_595292 8.34 8.48 Chip2 healthy_5 healthy _ 6746 6450 BZLF1-190-197 EBV 0.78 2156 NEG 150 6300 8 EBV BZLF1 RAKFKQLL effector memory T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-B*08:01 B2M MHCI -7794 chip0423_297054 10.51 8.42 Chip2 healthy_4 healthy TGTGTTGTGAGGGTAGATGGCCAGTTGCTGCTCTTT CVVRVDGQLLLF TRAV8-2*01 TRAJ16*01 4.0 209.0 TGTGCCAGCAGCACGACCCGCGCAGGGACTTGGCCCCTCCACTTT CASSTTRAGTWPLHF TRBV7-9*01 TRBJ1-6*01 18.0 952.0 CVVRVDGQLLLF_CASSTTRAGTWPLHF 1 4956 BZLF1-190-197 EBV 0.4 2156 NEG 165 4791 10 EBV BZLF1 RAKFKQLL effector memory T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-B*08:01 B2M MHCI -7795 chip0423_277724 11.36 9.72 Chip2 T1D_4 T1D TGTGCTGTCAATTCAGGAAACACACCTCTTGTCTTT CAVNSGNTPLVF TRAV1-2*01 TRAJ29*01 26.0 2007.0 TGTGCCAGCAGCCAAGTCAACAACCCGGGGGATGGCTACACCTTC CASSQVNNPGDGYTF TRBV14*01 TRBJ1-2*01 10.0 260.0 CAVNSGNTPLVF_CASSQVNNPGDGYTF 31 4765 EBNA3A-158-166 EBV 0.65 444 EBNA3A-158-166 166 4599 9 EBV EBNA3A QAKWRLQTL effector memory T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-B*08:01 B2M MHCI -7796 chip0423_593885 9.79 7.27 Chip2 T1D_5 T1D TGTGCAGCAACAGAAACCTCCTACGACAAGGTGATATTT CAATETSYDKVIF TRAV13-1*01 TRAJ50*01 30.0 1904.0 TGTGCTAGTGGTTTATTAGGACAGCTAAATTCACCCCTCCACTTT CASGLLGQLNSPLHF TRBV12-5*01 TRBJ1-6*01 73.0 3347.0 CAATETSYDKVIF_CASGLLGQLNSPLHF 1 7279 BZLF1-190-197 EBV 0.8 2156 NEG 177 7102 10 EBV BZLF1 RAKFKQLL effector memory T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-B*08:01 B2M MHCI -7797 chip0423_60140 9.68 11.07 Chip2 T1D_5 T1D TGTGCAGCTATAGAAACCTCCTACGACAAGGTGATATTT CAAIETSYDKVIF TRAV13-1*01 TRAJ50*01 43.0 3601.0 TGTGCCAGCAGCCGACAGGGCGGACCCAACAATGAGCAGTTCTTC CASSRQGGPNNEQFF TRBV7-9*01 TRBJ2-1*01 29.0 1325.0 CAAIETSYDKVIF_CASSRQGGPNNEQFF 1 4303 BZLF1-190-197 EBV 0.75 2156 NEG 141 4162 9 EBV BZLF1 RAKFKQLL effector memory T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-B*08:01 B2M MHCI -7798 chip0423_699021 -2.56 10.79 Chip2 T1D_4 T1D TGTGCTCTGAGTGAGTCGAACACCGGTAACCAGTTCTATTTT CALSESNTGNQFYF TRAV19*01 TRAJ49*01 36.0 2033.0 TGTGCCAGCAGCAATACAGGTTTCACAGATACGCAGTATTTT CASSNTGFTDTQYF TRBV7-9*01 TRBJ2-3*01 33.0 1259.0 CALSESNTGNQFYF_CASSNTGFTDTQYF 1 5644 ZNT8-153-161 ZNT8 0.4 41 NEG 129 5515 3 HomoSapiens ZNT8 VVTGVLVYL Naive T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*02:01 B2M MHCI -7799 chip0423_577033 -1.28 9.94 Chip2 healthy_3 healthy TGTGATTTAATTGTCCGGCTCTGCCTGTAAACTCACATTT CDLIVRct??ctACKLTF TRAV16*01 TRAJ44*01 6.0 303.0 CDLIVRct??ctACKLTF_ 1 5890 HCV-L2I HCV 0.43 9 NEG 132 5758 3 HCV POL KIVALGINAV Naive T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*02:01 B2M MHCI -7800 chip0423_184417 11.87 6.94 Chip2 T1D_4 T1D TGTGCTGTGAGGGGCACGACGTGGGGTGTCAAGACCATCTTT CAVRGTTWGVKTIF TRAV3*01 TRAJ30*01 25.0 1642.0 TGTGCCAGCAGCTTAGGAGGGGGAGAGGGGGCCAGTGAGCAGTTCTTC CASSLGGGEGASEQFF TRBV7-6*01 TRBJ2-1*01 54.0 3033.0 CAVRGTTWGVKTIF_CASSLGGGEGASEQFF 1 5172 EBNA3A-193-201 EBV 0.4 1022 NEG 181 4991 10 EBV EBNA3A FLRGRAYGL effector memory T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-B*08:01 B2M MHCI -7801 chip0423_85149 5.76 12.93 Chip2 T1D_6 T1D _ 6746 6457 NP380-388 FLU 0.4 60 NEG 174 6283 7 InfluenzaA NP ELRSRYWAI transitional T cells between effector and memory populations PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-B*08:01 B2M MHCI -7802 chip0423_855737 -3.68 7.78 Chip2 T1D_4 T1D TACAGTGCTAGATTGGAGCGACCACCCATCAGCTCCTACGAGCAGTACTTC YSARLERPPISSYEQYF TRBV20-1*01 TRBJ2-7*01 28.0 1502.0 _YSARLERPPISSYEQYF 1 7359 ZNT8-115-123 ZNT8 0.82 74 NEG 145 7214 2 HomoSapiens ZNT8 LLSLFSLWL Naive T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*02:01 B2M MHCI -7803 chip0423_431711 13.93 7.25 Chip2 T1D_5 T1D TGTGCCAGCAGTTTTTCGGGGGACTCTTCAGGGGCCAACGTCCTGACTTTC CASSFSGDSSGANVLTF TRBV12-3*01,TRBV12-4*01 TRBJ2-6*01 29.0 1865.0 _CASSFSGDSSGANVLTF 1 4112 BZLF1-190-197 EBV 0.59 2156 BZLF1-190-197 183 3929 10 EBV BZLF1 RAKFKQLL effector memory T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-B*08:01 B2M MHCI -7804 chip0423_63228 11.8 7.07 Chip2 T1D_6 T1D TGTGCCAGCACTTCGACAGAAACCGTCGATGGCTACACCTTC CASTSTETVDGYTF TRBV5-4*01 TRBJ1-2*01 13.0 696.0 _CASTSTETVDGYTF 4 7685 EBNA3A-158-166 EBV 0.63 444 NEG 216 7469 10 EBV EBNA3A QAKWRLQTL effector memory T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-B*08:01 B2M MHCI -7805 chip0423_856114 10.99 10.44 Chip2 T1D_4 T1D TGTGCACCTTCCAACTTCAACAAATTTTACTTT CAPSNFNKFYF TRAV13-1*01 TRAJ21*01 11.0 834.0 CAPSNFNKFYF_ 1 5397 BZLF1-190-197 EBV 0.46 2156 NEG 181 5216 9 EBV BZLF1 RAKFKQLL effector memory T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-B*08:01 B2M MHCI -7806 chip0423_391321 8.12 10.07 Chip2 T1D_4 T1D TGCGCCAGCAGCCAAGAAGTCACAGATACGCAGTATTTT CASSQEVTDTQYF TRBV4-3*01 TRBJ2-3*01 54.0 2609.0 _CASSQEVTDTQYF 5 6362 EBV-LMP1-1 EBV 0.75 237 NEG 174 6188 8 EBV LMP1 YLLEMLWRL effector memory T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*02:01 B2M MHCI -7807 chip0423_564885 5.33 9.54 Chip2 T1D_4 T1D TGTGCCAGCAGCTTAGGGCAAGCCTACGAGCAGTACTTC CASSLGQAYEQYF TRBV7-8*01 TRBJ2-7*01 27.0 1683.0 _CASSLGQAYEQYF 175 4862 EBNA3A-193-201 EBV 0.61 1022 NEG 156 4706 6 EBV EBNA3A FLRGRAYGL central memory T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-B*08:01 B2M MHCI -7808 chip0423_562941 -2.05 10.96 Chip2 T1D_5 T1D _ 6746 5261 INS-WMR-8 INS 0.52 17 INS-WMR-8 143 5118 3 HomoSapiens INS WMRLLPLL Naive T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-B*08:01 B2M MHCI -7809 chip0423_356641 11.53 9.87 Chip2 T1D_4 T1D TGTGCTGTGAGTGATGGAGAAGGAGCCCAGAAGCTGGTATTT CAVSDGEGAQKLVF TRAV8-6*01 TRAJ54*01 69.0 3022.0 TGTGCCAGCAGCTTAACGGTTCTGGCAGGTCCAAACACTGAAACTTTCTTT CASSLTVLAGPNTETFF TRBV7-3*01 TRBJ1-1*01 42.0 1501.0 CAVSDGEGAQKLVF_CASSLTVLAGPNTETFF 2 6105 BZLF1-190-197 EBV 1.0 2156 BZLF1-190-197 182 5923 9 EBV BZLF1 RAKFKQLL effector memory T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-B*08:01 B2M MHCI -7810 chip0423_167541 11.81 12.14 Chip2 T1D_4 T1D TGCATCGTCAAAGCCAGCGGTGGTTCTTCCGGCCTCACCTTT CIVKASGGSSGLTF TRAV26-1*01 TRAJ45*01 9.0 135.0 TGCATCGTCAGAGAGGGCGGAGCTGCTGACTGACTCCCCTTT CIVREGGAAD*LPF TRAV26-1*01 TRAJ45*01 8.0 1117.0 0.35 TGTGCCAGCAGCTTAGCGGTCGGAGAAGGGCCCCAGCATTTT CASSLAVGEGPQHF TRBV7-9*01 TRBJ1-5*01 13.0 741.0 CIVKASGGSSGLTF_CASSLAVGEGPQHF 1 2741 BZLF1-190-197 EBV 0.94 2156 BZLF1-190-197 168 2573 11 EBV BZLF1 RAKFKQLL effector T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-B*08:01 B2M MHCI -7811 chip0423_34020 14.15 9.26 Chip2 T1D_6 T1D TGCATCCTCCCACTTGCTGGTGGTACTAGCTATGGAAAGCTGACATTT CILPLAGGTSYGKLTF TRAV26-2*01 TRAJ52*01 82.0 3974.0 TGTGCCAGCAGCTTGGGACAGGCCTACGAGCAGTACTTC CASSLGQAYEQYF TRBV7-8*01 TRBJ2-7*01 12.0 636.0 CILPLAGGTSYGKLTF_CASSLGQAYEQYF 308 3073 EBNA3A-193-201 EBV 1.0 1022 NEG 174 2899 12 EBV EBNA3A FLRGRAYGL effector T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-B*08:01 B2M MHCI -7812 chip0423_778155 -1.26 7.89 Chip2 T1D_5 T1D TGTGCCAGCAGCTTGTCGGCCGGTCAACTGGGTTCACCCCTCCACTTT CASSLSAGQLGSPLHF TRBV7-3*01 TRBJ1-6*01 7.0 358.0 _CASSLSAGQLGSPLHF 1 5968 IAPP-MGI-9 IAPP 0.67 5 NEG 170 5798 3 HomoSapiens IAPP MGILKLQVF Naive T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-B*08:01 B2M MHCI -7813 chip0423_683305 9.66 9.11 Chip2 T1D_4 T1D TGCAGTGCTAGGGACCAAACAGGGAATGGCTACACCTTC CSARDQTGNGYTF TRBV20-1*01 TRBJ1-2*01 36.0 2675.0 _CSARDQTGNGYTF 1 4654 EBV-BLMF1 EBV 0.57 2531 NEG 172 4482 8 EBV BLMF1 GLCTLVAML effector memory T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*02:01 B2M MHCI -7814 chip0423_497361 -1.9 9.24 Chip2 T1D_5 T1D TGTGCCAGCGGCCAAGAAAAAACAGGGGGCGCGTTTCCCACCGGGGAGCTGTTTTTT CASGQEKTGGAFPTGELFF TRBV4-2*01 TRBJ2-2*01 23.0 560.0 _CASGQEKTGGAFPTGELFF 1 6857 NP44-52 FLU 0.78 474 NP44-52 150 6707 3 InfluenzaA NP CTELKLSDY Naive T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*01:01 B2M MHCI -7815 chip0423_429539 -4.07 9.72 Chip2 T1D_4 T1D TGTGCAATGAGATGGTCTAACTTTGGAAATGAGAAATTAACCTTT CAMRWSNFGNEKLTF TRAV12-3*01 TRAJ48*01 183.0 6512.0 TGCAGTGCTAGTCAGCTGGAGAACACTGAAGCTTTCTTT CSASQLENTEAFF TRBV20-1*01 TRBJ1-1*01 34.0 1559.0 CAMRWSNFGNEKLTF_CSASQLENTEAFF 1 6088 PGT-178 PGT 0.84 1480 PGT-178 156 5932 2 HomoSapiens PGT LLAGIGTVPI Naive T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*02:01 B2M MHCI -7816 chip0423_747375 0.56 8.66 Chip2 healthy_3 healthy _ 6746 6541 PGT-178 PGT 0.51 1480 PGT-178 150 6391 4 HomoSapiens PGT LLAGIGTVPI Naive T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*02:01 B2M MHCI -7817 chip0423_367540 -0.87 7.38 Chip2 T1D_6 T1D TGTGCCAGCAGCGAACAGGGTAGCAATCAGCCCCAGCATTTT CASSEQGSNQPQHF TRBV12-3*01,TRBV12-4*01 TRBJ1-5*01 36.0 942.0 _CASSEQGSNQPQHF 1 9398 INSDRIP-1-9 INS 0.88 8 INSDRIP-1-9 143 9255 3 HomoSapiens INSDRIP MLYQHLLPL Naive T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*02:01 B2M MHCI -7818 chip0423_325291 -1.32 10.82 Chip2 T1D_5 T1D TGCAGCGTTGTTAGGCCGGACAGGGCTGGCTACACCTTC CSVVRPDRAGYTF TRBV29-1*01 TRBJ1-2*01 40.0 3974.0 _CSVVRPDRAGYTF 1 5904 IAPP-ILK-8 IAPP 0.44 20 NEG 166 5738 3 HomoSapiens IAPP ILKLQVFL Naive T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-B*08:01 B2M MHCI -7819 chip0423_723079 16.31 11.53 Chip2 healthy_3 healthy TGTGCTGTCGGTTCTCCTAATTCTGGCGGCGGCCATGGCCCTCTCATCTTT CAVGSPNSGGGHGPLIF TRAV36/DV7*01 TRAJ42*01 11.0 250.0 TGTGCTAGTGGTCCGACTCATGGCTACACCTTC CASGPTHGYTF TRBV12-5*01 TRBJ1-2*01 8.0 447.0 CAVGSPNSGGGHGPLIF_CASGPTHGYTF 1 2726 NP44-52 FLU 0.75 474 NP44-52 161 2565 12 InfluenzaA NP CTELKLSDY effector T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*01:01 B2M MHCI -7820 chip0423_672094 13.34 8.34 Chip2 healthy_4 healthy TGTGCAGCAAGCGCAGAAGCCAGACTCATGTTT CAASAEARLMF TRAV29/DV5*01 TRAJ31*01 9.0 715.0 TGTGCCAGCAGGGTAGGCCGCGAACCCACCGGGGAGCTGTTTTTT CASRVGREPTGELFF TRBV3-1*01 TRBJ2-2*01 19.0 1244.0 CAASAEARLMF_CASRVGREPTGELFF 2 3288 BZLF1-190-197 EBV 0.85 2156 NEG 160 3128 10 EBV BZLF1 RAKFKQLL effector memory T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-B*08:01 B2M MHCI -7821 chip0423_562605 -4.39 8.66 Chip2 T1D_4 T1D TGTGCCGTTTCCTCGCGAGGAGGAAACAAACTCACCTTT CAVSSRGGNKLTF TRAV12-2*01 TRAJ10*01 47.0 3322.0 TGTGCCAGCACCCGAATCCGACAGGGTCTGGACGAGCAGTACTTC CASTRIRQGLDEQYF TRBV2*01 TRBJ2-7*01 42.0 3120.0 CAVSSRGGNKLTF_CASTRIRQGLDEQYF 1 7133 PGT-178 PGT 0.7 1480 PGT-178 138 6995 2 HomoSapiens PGT LLAGIGTVPI Naive T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*02:01 B2M MHCI -7822 chip0423_225944 -2.4 8.31 Chip2 T1D_6 T1D TGTGCAATGAGCGCGTCTAACTTTGGAAATGAGAAATTAACCTTT CAMSASNFGNEKLTF TRAV12-3*01 TRAJ48*01 39.0 1999.0 TGTGCCAGCAGCAATTGGGGCCCCAGGGTAGTCAATCAGCCCCAGCATTTT CASSNWGPRVVNQPQHF TRBV5-6*01 TRBJ1-5*01 56.0 1645.0 CAMSASNFGNEKLTF_CASSNWGPRVVNQPQHF 1 6356 PGT-178 PGT 0.57 1480 PGT-178 172 6184 3 HomoSapiens PGT LLAGIGTVPI Naive T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*02:01 B2M MHCI -7823 chip0423_118463 5.65 9.51 Chip2 T1D_4 T1D _ 6746 7844 EBV-LMP2-FLY EBV 0.56 355 NEG 159 7685 6 EBV LMP2 FLYALALLL central memory T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*02:01 B2M MHCI -7824 chip0423_881031 12.83 8.54 Chip2 T1D_6 T1D TGTGCCAGCAGCGTTAGCGGGGCCCCCTACGAGCAGTACTTC CASSVSGAPYEQYF TRBV9*01 TRBJ2-7*01 55.0 3372.0 _CASSVSGAPYEQYF 21 2342 EBNA3A-193-201 EBV 0.8 1022 NEG 155 2187 10 EBV EBNA3A FLRGRAYGL effector memory T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-B*08:01 B2M MHCI -7825 chip0423_494821 11.77 6.74 Chip2 T1D_4 T1D TGTGCTGTCAATTCAGGAAACACACCTCCTGTCTTT CAVNSGNTPPVF TRAV1-2*01 TRAJ29*01 3.0 224.0 TGTGCCAGCAGCCAAGTCAACAACCCGGGGGATGGCTACACCTTC CASSQVNNPGDGYTF TRBV14*01 TRBJ1-2*01 10.0 359.0 CAVNSGNTPPVF_CASSQVNNPGDGYTF 1 5445 EBNA3A-158-166 EBV 0.55 444 NEG 180 5265 10 EBV EBNA3A QAKWRLQTL effector memory T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-B*08:01 B2M MHCI -7826 chip0423_63774 15.55 9.33 Chip2 healthy_4 healthy TGCAGCGTTGGGGCTACAACAGGGAATCGGCTTTACAATGAGCAGTTCTTC CSVGATTGNRLYNEQFF TRBV29-1*01 TRBJ2-1*01 91.0 6134.0 _CSVGATTGNRLYNEQFF 1 2032 EBV-BRLF1 EBV 0.9 1264 NEG 168 1864 12 EBV BRLF1 YVLDHLIVV effector T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*02:01 B2M MHCI -7827 chip0423_41524 15.1 9.1 Chip2 T1D_6 T1D TACATCCTCCCACTTGCTGGTGGTACTAGCTATGGAAAGCTGACATTT YILPLAGGTSYGKLTF TRAV26-2*01 TRAJ52*01 1.0 28.0 TGTGCCAGCAGCTTGGGACAGGCCTACGAGCAGTACTTC CASSLGQAYEQYF TRBV7-8*01 TRBJ2-7*01 8.0 335.0 YILPLAGGTSYGKLTF_CASSLGQAYEQYF 1 2977 EBNA3A-193-201 EBV 0.7 1022 NEG 169 2808 12 EBV EBNA3A FLRGRAYGL effector T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-B*08:01 B2M MHCI -7828 chip0423_241824 7.15 9.9 Chip2 T1D_5 T1D TGTGCCAGCGGCCGGGCCGATAGAAATGGCTACACCTTC CASGRADRNGYTF TRBV12-3*01,TRBV12-4*01 TRBJ1-2*01 71.0 4176.0 _CASGRADRNGYTF 1 7732 BZLF1-190-197 EBV 0.67 2156 BZLF1-190-197 168 7564 8 EBV BZLF1 RAKFKQLL effector memory T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-B*08:01 B2M MHCI -7829 chip0423_232884 12.44 8.98 Chip2 T1D_4 T1D TGTGCCAGCAGCTTAGCGGTCGGAGAAGGGCCCCAGCATTTT CASSLAVGEGPQHF TRBV7-9*01 TRBJ1-5*01 57.0 2253.0 _CASSLAVGEGPQHF 113 4813 BZLF1-190-197 EBV 0.86 2156 BZLF1-190-197 170 4643 10 EBV BZLF1 RAKFKQLL effector memory T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-B*08:01 B2M MHCI -7830 chip0423_42002 12.75 10.06 Chip2 T1D_4 T1D TGTGCCAGCAGCTTAGCGGTCGGAGAAGGGCCCCAGCATTTT CASSLAVGEGPQHF TRBV7-9*01 TRBJ1-5*01 21.0 1007.0 _CASSLAVGEGPQHF 113 5744 BZLF1-190-197 EBV 0.85 2156 BZLF1-190-197 183 5561 9 EBV BZLF1 RAKFKQLL effector memory T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-B*08:01 B2M MHCI -7831 chip0423_619001 5.07 10.57 Chip2 healthy_3 healthy TGCGCAGCAAGCAGCCGGGTGGGGGTGCTGGCGGCCTCCCCTTT CAASSRVg?gGAGGLPF TRAV23/DV6*01 TRAJ45*01 29.0 1982.0 TGTGCCAGCAGCATGCAGCCGGGACGGAAAACATTCAGTACTTC CASSMQPg?gTENIQYF TRBV28*01 TRBJ2-4*01 8.0 242.0 CAASSRVg?gGAGGLPF_CASSMQPg?gTENIQYF 1 11336 GAG-433-442 HIV 1.0 19 NEG 152 11184 6 HIV-1 GAG FLGKIWPSYK central memory T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*02:01 B2M MHCI -7832 chip0423_268395 7.33 13.41 Chip2 T1D_4 T1D TGTGCAGGAGCGGGAAGCCAAGGAAATCTCATCTTT CAGAGSQGNLIF TRAV27*01 TRAJ42*01 51.0 3849.0 TGTGCCAGTAGTATAAGGAGCTCCTACGAGCAGTACTTC CASSIRSSYEQYF TRBV19*01 TRBJ2-7*01 6.0 495.0 CAGAGSQGNLIF_CASSIRSSYEQYF 1 3917 M1 FLU 0.8 1250 NEG 162 3755 7 InfluenzaA M1 GILGFVFTL transitional T cells between effector and memory populations PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*02:01 B2M MHCI -7833 chip0423_654206 6.8 11.08 Chip2 T1D_4 T1D _ 6746 7910 M1 FLU 0.56 1250 NEG 163 7747 7 InfluenzaA M1 GILGFVFTL transitional T cells between effector and memory populations PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*02:01 B2M MHCI -7834 chip0423_508591 -3.14 7.76 Chip2 T1D_6 T1D TGTGTGGTGAACAATGGCGGCTTTCAGAAACTTGTATTT CVVNNGGFQKLVF TRAV12-1*01 TRAJ8*01 44.0 3985.0 TGTGCCAGCAGTTTAAACCACAGGTCTGAAGCTTTCTTT CASSLNHRSEAFF TRBV27*01 TRBJ1-1*01 91.0 5168.0 CVVNNGGFQKLVF_CASSLNHRSEAFF 1 7200 LMP2A-CPL EBV 0.65 44 LMP2A-CPL 140 7060 2 EBV LMP2A CPLSKILL Naive T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-B*08:01 B2M MHCI -7835 chip0423_315571 -2.02 7.82 Chip2 T1D_5 T1D TGTGCCAGCAGTGAAGCGGGTCTCACCCGCTACGAGCAGTACTTC CASSEAGLTRYEQYF TRBV2*01 TRBJ2-7*01 17.0 991.0 _CASSEAGLTRYEQYF 1 6676 gp160-586-593 HIV 0.73 30 NEG 141 6535 3 HIV-1 gp160 YLKDQQLL Naive T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-B*08:01 B2M MHCI -7836 chip0423_192584 9.78 9.9 Chip2 T1D_4 T1D TGTGCTGTGAGTGCTGGCGCCGGCGCCCCGCAGCTGGTCTTT CAVSAGAGAPQLVF TRAV8-6*01 TRAJ54*01 3.0 225.0 TGTGCCAGCAGCTTAACGGTTCTGGCAGGTCCAAACACTGAAGCTTTCTTT CASSLTVLAGPNTEAFF TRBV7-3*01 TRBJ1-1*01 53.0 1714.0 CAVSAGAGAPQLVF_CASSLTVLAGPNTEAFF 1 6232 BZLF1-190-197 EBV 0.71 2156 BZLF1-190-197 146 6086 9 EBV BZLF1 RAKFKQLL effector memory T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-B*08:01 B2M MHCI -7837 chip0423_841055 15.93 10.17 Chip2 healthy_3 healthy _ 6746 3034 GAD65-114-122 GAD65 0.52 63 NEG 144 2890 12 HomoSapiens GAD65 VMNILLQYV effector T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*02:01 B2M MHCI -7838 chip0423_716890 -2.35 9.47 Chip2 T1D_5 T1D TGTGCCTCCCCGGAGTCCGGAGGCGGTGCTGCCGGCCTCACCTTT CASPESGGGAAGLTF TRAV24*01 TRAJ45*01 13.0 386.0 TGCGCCAGCAGCTTCGGGTCAGGGCTGGTACAGCAGTACTTC CASSFGSGLVQQYF TRBV5-1*01 TRBJ2-7*01 23.0 1120.0 CASPESGGGAAGLTF_CASSFGSGLVQQYF 1 7966 ZNT8-YAK-9 ZNT8 0.5 59 ZNT8-YAK-9 166 7800 3 HomoSapiens ZNT8 YAKWKLCSA Naive T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-B*08:01 B2M MHCI -7839 chip0423_557808 -4.28 7.3 Chip2 T1D_6 T1D TGTGCCAGCAGTGAAGTGGAGGGGGCAAATCAGCCCCAGCATTTT CASSEVEGANQPQHF TRBV6-1*01 TRBJ1-5*01 11.0 383.0 _CASSEVEGANQPQHF 1 6361 ZNT8-VTD-9 ZNT8 0.67 65 NEG 155 6206 2 HomoSapiens ZNT8 VTDAAHLLI Naive T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*01:01 B2M MHCI -7840 chip0423_352492 13.4 9.19 Chip2 T1D_5 T1D TGTGCCAGCAGCCCCCTAGGATCCAGTAATAATTCACCCCTCCACTTT CASSPLGSSNNSPLHF TRBV7-9*01 TRBJ1-6*01 31.0 962.0 _CASSPLGSSNNSPLHF 2 4294 BZLF1-190-197 EBV 0.82 2156 NEG 179 4115 10 EBV BZLF1 RAKFKQLL effector memory T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-B*08:01 B2M MHCI -7841 chip0423_157622 11.8 12.98 Chip2 T1D_4 T1D TGCATCGTCAGAGAGGGAGGAGGTGCTGACGGACTCACCTTT CIVREGGGADGLTF TRAV26-1*01 TRAJ45*01 2.0 12.0 TGTGCCAGCAGCTTAGCGGTCGGAGAAGGGCCCCAGCATTTT CASSLAVGEGPQHF TRBV7-9*01 TRBJ1-5*01 36.0 1152.0 CIVREGGGADGLTF_CASSLAVGEGPQHF 68 2348 BZLF1-190-197 EBV 0.95 2156 BZLF1-190-197 149 2199 11 EBV BZLF1 RAKFKQLL effector T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-B*08:01 B2M MHCI -7842 chip0423_209518 8.65 10.16 Chip2 healthy_4 healthy CGTGCAATGAGAGCCCCCCGGACTGGGGCCAGCCACCTCTTCTTT RAMRAPRTGASHLFF TRAV14/DV4*01 TRAJ36*01 11.0 316.0 TGCGCCAGCAGCCAAGCCCCGGGACAGCGCACCGGGGAGCTGTTTTTT CASSQAPGQRTGELFF TRBV4-1*01 TRBJ2-2*01 12.0 616.0 RAMRAPRTGASHLFF_CASSQAPGQRTGELFF 1 6238 BZLF1-190-197 EBV 0.56 2156 NEG 171 6067 8 EBV BZLF1 RAKFKQLL effector memory T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-B*08:01 B2M MHCI -7843 chip0423_726452 5.78 12.57 Chip2 T1D_6 T1D TGTGCCAGTAGTATAAGGGGGGCCTACGAGCAGTACTCC CASSIRGAYEQYS TRBV19*01 TRBJ2-7*01 8.0 295.0 _CASSIRGAYEQYS 1 6977 M1 FLU 0.94 1250 M1 158 6819 7 InfluenzaA M1 GILGFVFTL transitional T cells between effector and memory populations PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*02:01 B2M MHCI -7844 chip0423_511473 -2.11 7.56 Chip2 T1D_6 T1D TGTGCAATGAGTTTATCTAACTTTGGAAATGAGAAATTAACCTTT CAMSLSNFGNEKLTF TRAV12-3*01 TRAJ48*01 97.0 3979.0 TGTGCCAGCAGTCCCACCCGGACAGAAGAGAACACCGGGAAGCTGTTTTTT CASSPTRTEENTGKLFF TRBV28*01 TRBJ2-2*01 37.0 1278.0 CAMSLSNFGNEKLTF_CASSPTRTEENTGKLFF 1 5389 PGT-178 PGT 0.75 1480 PGT-178 156 5233 4 HomoSapiens PGT LLAGIGTVPI Naive T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*02:01 B2M MHCI -7845 chip0423_301817 7.45 10.68 Chip2 T1D_6 T1D TGCGCCAGCAGTGACATTAGGGAGGGGCAGGGTGAAGCTTTCTTT CASSDIREGQGEAFF TRBV10-2*01 TRBJ1-1*01 13.0 529.0 _CASSDIREGQGEAFF 37 6756 EBNA3A-158-166 EBV 0.91 444 NEG 179 6577 7 EBV EBNA3A QAKWRLQTL transitional T cells between effector and memory populations PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-B*08:01 B2M MHCI -7846 chip0423_236767 -1.36 6.75 Chip2 T1D_6 T1D TGTGCAATGGGAAAATCTAACTTTGGAAATGAGAAATTAACCTTT CAMGKSNFGNEKLTF TRAV12-3*01 TRAJ48*01 43.0 1331.0 TGTGCCAGCAGCCAAGACGGGCTAGCGGGGAACAATGAGCAGTTCTTC CASSQDGLAGNNEQFF TRBV14*01 TRBJ2-1*01 24.0 979.0 CAMGKSNFGNEKLTF_CASSQDGLAGNNEQFF 1 6884 PGT-178 PGT 0.78 1480 PGT-178 144 6740 3 HomoSapiens PGT LLAGIGTVPI Naive T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*02:01 B2M MHCI -7847 chip0423_111669 -1.56 9.03 Chip2 T1D_5 T1D CCTGCAGGGGGGAAGCCAAGGAACTCTCCTCTTT PAGGKcc??aaGTLLF TRAV13-2*01 TRAJ42*01 1.0 15.0 TGTGCCAGCCGGGCGCACGGTAGCAATCAGCCCCAGCATTTT CASRAHGSNQPQHF TRBV5-6*01 TRBJ1-5*01 85.0 4990.0 PAGGKcc??aaGTLLF_CASRAHGSNQPQHF 1 6845 NP140-148 FLU 0.74 102 NEG 158 6687 3 InfluenzaA NP HSNLNDATY Naive T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*01:01 B2M MHCI -7848 chip0423_762091 5.06 9.63 Chip2 T1D_4 T1D TGTGCAGCAACCCCCAATGATCAAAGCTGCAGGCAACAAGCTAACTTTT CAATPNDQ??aAAGNKLTF TRAV23/DV6*01 TRAJ17*01 41.0 1932.0 TGTGCCAGCAGTTACTCAAGTACAGGGGAGTACTTC CASSYSSTGEYF TRBV6-2*01,TRBV6-3*01 TRBJ2-7*01 13.0 680.0 CAATPNDQ??aAAGNKLTF_CASSYSSTGEYF 1 4038 NP140-148 FLU 0.44 102 NEG 140 3898 6 InfluenzaA NP HSNLNDATY central memory T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*01:01 B2M MHCI -7849 chip0423_479706 12.47 8.34 Chip2 T1D_4 T1D TGTGCCAGCAGCTTAACGGTTCTGGCAGGTCCAAACACTGAAGCTTTCTTT CASSLTVLAGPNTEAFF TRBV7-3*01 TRBJ1-1*01 33.0 1100.0 _CASSLTVLAGPNTEAFF 32 3241 BZLF1-190-197 EBV 1.0 2156 BZLF1-190-197 132 3109 10 EBV BZLF1 RAKFKQLL effector memory T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-B*08:01 B2M MHCI -7850 chip0423_103303 -1.55 6.86 Chip2 T1D_5 T1D TGTGTGATGAACATTTGGAGGGATAGCAACTATCAGTTAATCTGG CVMNIWRDSNYQLIW TRAV12-1*01 TRAJ33*01 42.0 1794.0 TGTGCCAGCAGCTTAGCGCAGTCTAGCTGGTACAATGAGCAGTTCTTC CASSLAQSSWYNEQFF TRBV11-1*01 TRBJ2-1*01 40.0 2444.0 CVMNIWRDSNYQLIW_CASSLAQSSWYNEQFF 1 8056 G6PC2-LTS-10 IGRP 0.93 59 G6PC2-LTS-10 140 7916 3 HomoSapiens G6PC2 LTSLTILQLY Naive T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*01:01 B2M MHCI -7851 chip0423_714356 9.01 8.18 Chip2 healthy_4 healthy TGTGCCAGCAGCTTAAACGTCGGGGAGGGCGCAGGAGACACCATATATTTT CASSLNVGEGAGDTIYF TRBV7-6*01 TRBJ1-3*01 1.0 27.0 _CASSLNVGEGAGDTIYF 1 4652 BZLF1-190-197 EBV 0.9 2156 NEG 144 4508 8 EBV BZLF1 RAKFKQLL effector memory T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-B*08:01 B2M MHCI -7852 chip0423_155905 15.06 8.48 Chip2 T1D_5 T1D TGTGCAATGAGAGAGGGCGAAAGCAGTGCTTCCAAGATAATCTTT CAMREGESSASKIIF TRAV14/DV4*01 TRAJ3*01 96.0 3860.0 TGCAGCGGGGGGGAGGCCTATGGCTACACCTTC CSGGEAYGYTF TRBV29-1*01 TRBJ1-2*01 69.0 7080.0 CAMREGESSASKIIF_CSGGEAYGYTF 3 3358 BZLF1-190-197 EBV 0.47 2156 NEG 154 3204 12 EBV BZLF1 RAKFKQLL effector T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-B*08:01 B2M MHCI -7853 chip0423_871081 5.13 11.62 Chip2 T1D_5 T1D TGTGCAGCAAGTGAAACCTCCTACGACAAGGTGATATTT CAASETSYDKVIF TRAV13-1*01 TRAJ50*01 1.0 42.0 TGTGCCAGCAGCTTGGGGGACAGCGACGGATATGAGCAGTTCTTC CASSLGDSDGYEQFF TRBV12-3*01,TRBV12-4*01 TRBJ2-1*01 20.0 1445.0 CAASETSYDKVIF_CASSLGDSDGYEQFF 1 5578 BZLF1-190-197 EBV 0.45 2156 NEG 166 5412 6 EBV BZLF1 RAKFKQLL central memory T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-B*08:01 B2M MHCI -7854 chip0423_750885 10.95 8.24 Chip2 T1D_4 T1D TGTGCCAGCAGCTTAGCGGTCGGAGAAGGGCCCCAGCATTTT CASSLAVGEGPQHF TRBV7-9*01 TRBJ1-5*01 37.0 1573.0 _CASSLAVGEGPQHF 113 4557 BZLF1-190-197 EBV 1.0 2156 BZLF1-190-197 160 4397 10 EBV BZLF1 RAKFKQLL effector memory T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-B*08:01 B2M MHCI -7855 chip0423_558230 5.51 10.02 Chip2 T1D_4 T1D TGTGCTCTCACTACCTATGGTCAGAATTTTGTCTTT CALTTYGQNFVF TRAV38-1*01 TRAJ26*01 1.0 28.0 TGTGCCAGCAGCACGACCCGCGCAGGGACTTGGCCCCTCCACTTT CASSTTRAGTWPLHF TRBV7-9*01 TRBJ1-6*01 7.0 536.0 CALTTYGQNFVF_CASSTTRAGTWPLHF 1 6396 EBV-LMP1-1 EBV 0.92 237 NEG 176 6220 6 EBV LMP1 YLLEMLWRL central memory T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*02:01 B2M MHCI -7856 chip0423_179519 -2.49 7.63 Chip2 T1D_5 T1D TGTGCCAGCAGTCCCGGGCCCGGAGGCTACACCTTC CASSPGPGGYTF TRBV27*01 TRBJ1-2*01 13.0 1167.0 _CASSPGPGGYTF 1 8059 G6PC2-YLK-8 IGRP 0.61 27 G6PC2-YLK-8 154 7905 2 HomoSapiens G6PC2 YLKTNLFL Naive T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-B*08:01 B2M MHCI -7857 chip0423_115222 7.89 11.76 Chip2 healthy_3 healthy _ 6746 5536 NP44-52 FLU 0.84 474 NP44-52 146 5390 7 InfluenzaA NP CTELKLSDY transitional T cells between effector and memory populations PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*01:01 B2M MHCI -7858 chip0423_878644 7.14 11.83 Chip2 T1D_6 T1D TGTGCCTCCCAAGGAGGAAGCCAAGGAAATCTCATCTTT CASQGGSQGNLIF TRAV20*01 TRAJ42*01 73.0 3446.0 TGTGCCAGCAGCTTAGGAGGACAGACAGAGACCCAGTACTTC CASSLGGQTETQYF TRBV13*01 TRBJ2-5*01 8.0 442.0 CASQGGSQGNLIF_CASSLGGQTETQYF 13 5922 ROTA-VP6 ROTA 0.5 47 ROTA-VP6 164 5758 7 RotavirusA VP6 TLLANVTAV transitional T cells between effector and memory populations PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*02:01 B2M MHCI -7859 chip0423_835947 -1.74 8.15 Chip2 T1D_5 T1D TGTGCAGAGCTATTAACTCAGGGCGGATCTGAAAAGCTGGTCTTT CAELLTQGGSEKLVF TRAV13-2*01 TRAJ57*01 31.0 1333.0 CAELLTQGGSEKLVF_ 1 5768 NP44-52 FLU 0.73 474 NP44-52 154 5614 4 InfluenzaA NP CTELKLSDY Naive T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*01:01 B2M MHCI -7860 chip0423_398857 14.48 10.92 Chip2 T1D_5 T1D TGTGCCAGCCAACTAGCGGGAGGCACCGGGGAGCTGTTTTTT CASQLAGGTGELFF TRBV24-1*01 TRBJ2-2*01 12.0 915.0 _CASQLAGGTGELFF 69 2748 BZLF1-190-197 EBV 0.8 2156 NEG 173 2575 12 EBV BZLF1 RAKFKQLL effector T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-B*08:01 B2M MHCI -7861 chip0423_392642 12.85 8.6 Chip2 T1D_4 T1D TGTGCCAGCAGCTTAGCGGTCGGAGAAGGGCCCCAGCATTTT CASSLAVGEGPQHF TRBV7-9*01 TRBJ1-5*01 123.0 4936.0 _CASSLAVGEGPQHF 113 3092 BZLF1-190-197 EBV 0.95 2156 BZLF1-190-197 168 2924 10 EBV BZLF1 RAKFKQLL effector memory T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-B*08:01 B2M MHCI -7862 chip0423_854199 12.56 10.98 Chip2 T1D_5 T1D TGTGCAGAGATGGAAACCTCCTACGACAAGGTGATATTT CAEMETSYDKVIF TRAV13-2*01 TRAJ50*01 37.0 1674.0 TGTGCCAGCAGCTCCTTAAGCGGGGGGGCAGGAAATGAGCAGTTCTTC CASSSLSGGAGNEQFF TRBV7-9*01 TRBJ2-1*01 29.0 923.0 CAEMETSYDKVIF_CASSSLSGGAGNEQFF 27 3307 BZLF1-190-197 EBV 0.45 2156 NEG 168 3139 9 EBV BZLF1 RAKFKQLL effector memory T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-B*08:01 B2M MHCI -7863 chip0423_722710 -2.51 14.46 Chip2 T1D_4 T1D TGTGCTATATGTAACCAGGGAAGAAAGCTTATCATA CAICNQGRKLII TRAV17*01 TRAJ23*01 8.0 682.0 TGTGCTGTTTTTTCCCGGGGCGGAGAGCTTATCTTC CAVFSRGGELIF TRAV17*01 TRAJ23*01 6.0 80.0 0.38 CAICNQGRKLII_ 1 2962 CVB3-P3A CVB 0.88 77 NEG 156 2806 1 CoxsackievirusB P3A GIIYIIYKL Naive T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*02:01 B2M MHCI -7864 chip0423_205044 14.44 11.13 Chip2 T1D_6 T1D TGTGCTGTGAGACCTTCGATAATGCAGGCAACATGCTCACCTTT CAVRPSIa?tAGNMLTF TRAV3*01 TRAJ39*01 1.0 52.0 TGCAGCGTGGGGACAGGGGGCACTAATGAAAAACTGTTTTTT CSVGTGGTNEKLFF TRBV29-1*01 TRBJ1-4*01 8.0 195.0 CAVRPSIa?tAGNMLTF_CSVGTGGTNEKLFF 7 2552 EBV-BLMF1 EBV 0.42 2531 NEG 154 2398 12 EBV BLMF1 GLCTLVAML effector T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*02:01 B2M MHCI -7865 chip0423_751137 13.07 7.91 Chip2 T1D_4 T1D TGTGCCAGCAGCTTAACGGTTCTGGCAGGTCCAAACACTGAAGCTTTCTTT CASSLTVLAGPNTEAFF TRBV7-3*01 TRBJ1-1*01 3.0 71.0 _CASSLTVLAGPNTEAFF 32 4048 BZLF1-190-197 EBV 1.0 2156 BZLF1-190-197 161 3887 10 EBV BZLF1 RAKFKQLL effector memory T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-B*08:01 B2M MHCI -7866 chip0423_706131 15.42 11.53 Chip2 T1D_4 T1D TGCATCGTCAGAGAGGGAGGAGGTGCTGACGGACTCACCTTT CIVREGGGADGLTF TRAV26-1*01 TRAJ45*01 32.0 1844.0 CIVREGGGADGLTF_ 9 2999 BZLF1-190-197 EBV 0.8 2156 BZLF1-190-197 173 2826 12 EBV BZLF1 RAKFKQLL effector T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-B*08:01 B2M MHCI -7867 chip0423_464254 0.48 8.63 Chip2 T1D_6 T1D TGTGCCAGCAGCCTTTCCCCCGATGCCGCCTATGGCTACACCTTC CASSLSPDAAYGYTF TRBV27*01 TRBJ1-2*01 28.0 1156.0 _CASSLSPDAAYGYTF 1 9937 MART1-A28L MART1 0.5 84 NEG 159 9778 4 HomoSapiens MART1 ALGIGILTV Naive T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*02:01 B2M MHCI -7868 chip0423_449649 -0.76 9.01 Chip2 T1D_6 T1D TGTGCTGTGAACGACTACAAGCTCAGCTTT CAVNDYKLSF TRAV21*01 TRAJ20*01 1.0 188.0 TGTGCCGTCAGAAGCAGGGGTGACAACGACGAGCAGTACTTC CAVRSRGDNDEQYF TRBV10-3*01 TRBJ2-7*01 6.0 196.0 CAVNDYKLSF_CAVRSRGDNDEQYF 1 9388 G6PC2-NLI-8 IGRP 0.42 32 NEG 151 9237 3 HomoSapiens G6PC2 NLIFKWIL Naive T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-B*08:01 B2M MHCI -7869 chip0423_411254 8.66 9.28 Chip2 T1D_6 T1D TGCATCCTCCCACTTGCTGGTGGTACTAGCTATGGAAAGCTGACATTT CILPLAGGTSYGKLTF TRAV26-2*01 TRAJ52*01 46.0 2009.0 TGTGCCAGCAGCTTGGGACAGGCCTACGAGCAGTACTTC CASSLGQAYEQYF TRBV7-8*01 TRBJ2-7*01 54.0 3235.0 CILPLAGGTSYGKLTF_CASSLGQAYEQYF 308 7326 EBNA3A-193-201 EBV 0.77 1022 EBNA3A-193-201 179 7147 8 EBV EBNA3A FLRGRAYGL effector memory T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-B*08:01 B2M MHCI -7870 chip0423_14510 14.83 12.33 Chip2 T1D_5 T1D TGTGCCAGCCAACTAGCGGGAGGCACCGGGGAGCTGTTTTTT CASQLAGGTGELFF TRBV24-1*01 TRBJ2-2*01 22.0 1108.0 _CASQLAGGTGELFF 69 2533 BZLF1-190-197 EBV 0.67 2156 NEG 158 2375 12 EBV BZLF1 RAKFKQLL effector T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-B*08:01 B2M MHCI -7871 chip0423_396627 -2.05 11.15 Chip2 T1D_5 T1D _ 6746 5381 EBNA3A-158-166 EBV 0.59 444 EBNA3A-158-166 166 5215 3 EBV EBNA3A QAKWRLQTL Naive T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-B*08:01 B2M MHCI -7872 chip0423_229388 6.51 11.16 Chip2 T1D_6 T1D TGTGCCTTTATGCCCGGTAACCAGTTCTATTTT CAFMPGNQFYF TRAV24*01 TRAJ49*01 16.0 2037.0 TGTACCAGTAGTCTAATGGGGGGGGAGCTGTTTTTT CTSSLMGGELFF TRBV19*01 TRBJ2-2*01 2.0 271.0 CAFMPGNQFYF_CTSSLMGGELFF 1 9850 NP30-38 FLU 0.78 72 NEG 180 9670 7 InfluenzaA NP RPIIRPATL transitional T cells between effector and memory populations PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-B*08:01 B2M MHCI -7873 chip0423_35255 5.43 9.33 Chip2 T1D_6 T1D TGCATCCTCCCACTTGCTGGTGGTACTAGCTATGGAAAGCTGACATTT CILPLAGGTSYGKLTF TRAV26-2*01 TRAJ52*01 45.0 2024.0 TGTGCCAGCAGCTTGGGACAGGCCTACGAGCAGTACTTC CASSLGQAYEQYF TRBV7-8*01 TRBJ2-7*01 54.0 2424.0 CILPLAGGTSYGKLTF_CASSLGQAYEQYF 308 6496 EBNA3A-193-201 EBV 0.8 1022 EBNA3A-193-201 189 6307 6 EBV EBNA3A FLRGRAYGL central memory T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-B*08:01 B2M MHCI -7874 chip0423_809340 -2.67 9.99 Chip2 T1D_4 T1D TGTGCCGGCAGTTCTGGGGCAGGTGACAATGAGCAGTTCTTC CAGSSGAGDNEQFF TRBV6-5*01 TRBJ2-1*01 40.0 1422.0 _CAGSSGAGDNEQFF 1 4914 PGT-178 PGT 0.58 1480 NEG 141 4773 2 HomoSapiens PGT LLAGIGTVPI Naive T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*02:01 B2M MHCI -7875 chip0423_428530 -0.57 10.48 Chip2 T1D_6 T1D TGTGCCGTGAATACTGGAGGCTTCAAAACTATCTTT CAVNTGGFKTIF TRAV12-2*01 TRAJ9*01 27.0 2021.0 TGTGCCAGCCGCGTCGGTTCCGGGTCGCTGTTTTTT CASRVGSGSLFF TRBV9*01 TRBJ2-2*01 6.0 538.0 CAVNTGGFKTIF_CASRVGSGSLFF 1 6706 MART1-ALA MART1 0.41 269 NEG 160 6546 3 HomoSapiens MART1 ALAGIGILTV Naive T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*02:01 B2M MHCI -7876 chip0423_427158 -2.7 7.96 Chip2 T1D_6 T1D TGTGCCGTGAAATTTCAGGGAGCCCAGAAGCTGGTATTT CAVKFQGAQKLVF TRAV12-2*01 TRAJ54*01 8.0 731.0 TGCGCCAGCAGCCCGTGGAAGGGCGAAGAGACCCAGTACTTC CASSPWKGEETQYF TRBV4-1*01 TRBJ2-5*01 28.0 1707.0 CAVKFQGAQKLVF_CASSPWKGEETQYF 1 9176 INS-WMR-8 INS 0.69 17 NEG 165 9011 2 HomoSapiens INS WMRLLPLL Naive T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-B*08:01 B2M MHCI -7877 chip0423_163756 -3.39 12.12 Chip2 T1D_6 T1D TGTGCCAGCAGCTTATACAGCGGACTTAACACTGAAGCTTTCTTT CASSLYSGLNTEAFF TRBV7-8*01 TRBJ1-1*01 7.0 145.0 _CASSLYSGLNTEAFF 1 4438 ZNT8-YAK-9 ZNT8 0.79 59 ZNT8-YAK-9 153 4285 1 HomoSapiens ZNT8 YAKWKLCSA Naive T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-B*08:01 B2M MHCI -7878 chip0423_852643 -2.05 8.03 Chip2 T1D_5 T1D TGTGTGGTGTTCCCGGCGCCTGGTGGCTACAATAAGCTGATTTTT CVVFPAPGGYNKLIF TRAV12-1*01 TRAJ4*01 17.0 825.0 TGCGCCAGCAGCTTATTGGGAGCCGCCACTGAAGCTTTCTTT CASSLLGAATEAFF TRBV5-1*01 TRBJ1-1*01 19.0 797.0 CVVFPAPGGYNKLIF_CASSLLGAATEAFF 1 8082 ZNT8-YAK-9 ZNT8 0.71 59 NEG 147 7935 2 HomoSapiens ZNT8 YAKWKLCSA Naive T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-B*08:01 B2M MHCI -7879 chip0423_357128 14.74 11.43 Chip2 T1D_5 T1D TGTGCAGCAACAGAAACCTCCTACGACAAGGTGATATTT CAATETSYDKVIF TRAV13-1*01 TRAJ50*01 8.0 568.0 TGTGCCAGCATCGACCTAGGGGGCGAGGTTTCCTACAATGAGCAGTTCTTC CASIDLGGEVSYNEQFF TRBV11-1*01 TRBJ2-1*01 40.0 1906.0 CAATETSYDKVIF_CASIDLGGEVSYNEQFF 2 2847 BZLF1-190-197 EBV 0.4 2156 NEG 154 2693 12 EBV BZLF1 RAKFKQLL effector T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-B*08:01 B2M MHCI -7880 chip0423_45606 10.55 6.91 Chip2 T1D_6 T1D TGCATCCTCCCACTTGCTGGTGGTACTAGCTATGGAAAGCTGACATTT CILPLAGGTSYGKLTF TRAV26-2*01 TRAJ52*01 60.0 2115.0 TGTGCCAGCAGCTTGGGACAGGCCTACGAGCAGTACTTC CASSLGQAYEQYF TRBV7-8*01 TRBJ2-7*01 25.0 1560.0 CILPLAGGTSYGKLTF_CASSLGQAYEQYF 308 6220 EBNA3A-193-201 EBV 0.58 1022 EBNA3A-193-201 183 6037 10 EBV EBNA3A FLRGRAYGL effector memory T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-B*08:01 B2M MHCI -7881 chip0423_47070 11.03 9.64 Chip2 T1D_4 T1D TGTGCCAGCAGCCAAATCAACAACCCGGGGGATGGCTACACCTTC CASSQINNPGDGYTF TRBV14*01 TRBJ1-2*01 4.0 201.0 _CASSQINNPGDGYTF 1 4701 EBNA3A-158-166 EBV 0.6 444 NEG 181 4520 9 EBV EBNA3A QAKWRLQTL effector memory T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-B*08:01 B2M MHCI -7882 chip0423_386287 -3.06 11.5 Chip2 healthy_3 healthy TGTGCTACGGTCCCTGCTGCTGGTGGTACTAGCTATGGAAAGCTGACATTT CATVPAAGGTSYGKLTF TRAV17*01 TRAJ52*01 33.0 761.0 TGCGCCAGCAGCTTGCTAGCGGATGCCTACGAGCAGTACTTC CASSLLADAYEQYF TRBV5-1*01 TRBJ2-7*01 14.0 665.0 CATVPAAGGTSYGKLTF_CASSLLADAYEQYF 1 4633 MART1-A28L MART1 0.89 84 MART1-A28L 160 4473 4 HomoSapiens MART1 ALGIGILTV Naive T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*02:01 B2M MHCI -7883 chip0423_307848 10.69 9.1 Chip2 T1D_6 T1D TGCAGCGCCGGCAGGGACGGGACTAATGAAAAACTGTTTTTT CSAGRDGTNEKLFF TRBV29-1*01 TRBJ1-4*01 62.0 4960.0 _CSAGRDGTNEKLFF 159 4055 EBV-BLMF1 EBV 0.57 2531 NEG 196 3859 9 EBV BLMF1 GLCTLVAML effector memory T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*02:01 B2M MHCI -7884 chip0423_880012 -4.18 8.38 Chip2 T1D_4 T1D TGTGCCGTGGGACAGGACACCGACAAGCTCATCTTT CAVGQDTDKLIF TRAV12-2*01 TRAJ34*01 25.0 1672.0 TGTGCCAGCAGCTTAGGGGAAGGCTACACCTTC CASSLGEGYTF TRBV7-9*01 TRBJ1-2*01 11.0 751.0 CAVGQDTDKLIF_CASSLGEGYTF 1 5722 PGT-178 PGT 0.78 1480 PGT-178 149 5573 2 HomoSapiens PGT LLAGIGTVPI Naive T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*02:01 B2M MHCI -7885 chip0423_760461 -3.22 10.87 Chip2 T1D_4 T1D TGCCTCGTGGGTGACGAAGGAAACACACCTCTTGTCTTT CLVGDEGNTPLVF TRAV4*01 TRAJ29*01 29.0 2019.0 CLVGDEGNTPLVF_ 1 4927 G6PC2-LTS-10 IGRP 0.56 59 NEG 158 4769 4 HomoSapiens G6PC2 LTSLTILQLY Naive T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*01:01 B2M MHCI -7886 chip0423_497953 -3.5 9.84 Chip2 healthy_3 healthy TGTGCTGTGCGTGAGGGTGCGGCTGGGCGTTACCAACTCACTTTC CAVREGAAGRYQLTF TRAV8-4*01 TRAJ28*01 49.0 1744.0 TGTGCCAGCAGCAGTCCCAGCGAACGGAATTCACCCCTCCACTTT CASSSPSERNSPLHF TRBV7-8*01 TRBJ1-6*01 8.0 159.0 CAVREGAAGRYQLTF_CASSSPSERNSPLHF 1 5579 EBV-LMP2A EBV 0.64 700 NEG 155 5424 2 EBV LMP2A CLGGLLTMV Naive T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*02:01 B2M MHCI -7887 chip0423_260639 11.05 10.48 Chip2 T1D_4 T1D TGTGCTACGGGGGGGGGTTCAGGATACAGCACCCTCACCTTT CATGGGSGYSTLTF TRAV17*01 TRAJ11*01 40.0 1307.0 TGTGCAGAGAGAGACCCATCCGAGGTGCTACGGACCCGCTCACCTTT CAERDPSga?GATDPLTF TRAV13-2*01 TRAJ32*01 33.0 1097.0 0.34 TGTGCCAGCAGTCCGCAGGGAGGGAACTATGGCTACACCTTC CASSPQGGNYGYTF TRBV6-1*01 TRBJ1-2*01 38.0 2459.0 CATGGGSGYSTLTF_CASSPQGGNYGYTF 1 5499 EBV-LMP2-FLY EBV 0.68 355 EBV-LMP2-FLY 162 5337 9 EBV LMP2 FLYALALLL effector memory T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*02:01 B2M MHCI -7888 chip0423_464124 9.04 11.23 Chip2 T1D_5 T1D TGTGCAGAGATGGAAACCTCCTACGACAAGGTGATATTT CAEMETSYDKVIF TRAV13-2*01 TRAJ50*01 33.0 1807.0 TGTGCCAGCCGCTCCTTAAGCGGGGGGGCAGGAAATGCGCAGTTCTTC CASRSLSGGAGNAQFF TRBV7-9*01 TRBJ2-1*01 5.0 276.0 CAEMETSYDKVIF_CASRSLSGGAGNAQFF 1 4230 BZLF1-190-197 EBV 0.46 2156 NEG 161 4069 9 EBV BZLF1 RAKFKQLL effector memory T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-B*08:01 B2M MHCI -7889 chip0423_319273 11.18 10.87 Chip2 T1D_4 T1D CGCATCGTCAGAGAGGGAGGAGGTGCTGACGGACTCACCTTT RIVREGGGADGLTF TRAV26-1*01 TRAJ45*01 20.0 2049.0 TGTGCCAGCAGCTTAGCGGTCGGAGAAGGGCCCCAGCATTTT CASSLAVGEGPQHF TRBV7-9*01 TRBJ1-5*01 1.0 13.0 RIVREGGGADGLTF_CASSLAVGEGPQHF 3 3557 BZLF1-190-197 EBV 0.94 2156 BZLF1-190-197 167 3390 9 EBV BZLF1 RAKFKQLL effector memory T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-B*08:01 B2M MHCI -7890 chip0423_478982 -1.98 10.32 Chip2 healthy_3 healthy _ 6746 5109 ZNT8-VTD-9 ZNT8 0.96 65 ZNT8-VTD-9 141 4968 3 HomoSapiens ZNT8 VTDAAHLLI Naive T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*01:01 B2M MHCI -7891 chip0423_466424 -2.19 10.38 Chip2 T1D_6 T1D TGTGCCAGCACCCCAGTGGAGGGAACTGAAGCTTTCTTT CASTPVEGTEAFF TRBV12-3*01,TRBV12-4*01 TRBJ1-1*01 1.0 36.0 _CASTPVEGTEAFF 1 5865 PGT-178 PGT 0.83 1480 NEG 169 5696 3 HomoSapiens PGT LLAGIGTVPI Naive T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*02:01 B2M MHCI -7892 chip0423_125716 -0.82 10.61 Chip2 T1D_4 T1D _ 6746 8824 PGT-178 PGT 0.96 1480 PGT-178 149 8675 3 HomoSapiens PGT LLAGIGTVPI Naive T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*02:01 B2M MHCI -7893 chip0423_848009 10.41 7.4 Chip2 T1D_4 T1D TGTGCCAGCAGCCAAGTCAACAACCCGGGGGATGGCTACACCTTC CASSQVNNPGDGYTF TRBV14*01 TRBJ1-2*01 1.0 33.0 _CASSQVNNPGDGYTF 94 4572 EBNA3A-158-166 EBV 0.4 444 NEG 188 4384 10 EBV EBNA3A QAKWRLQTL effector memory T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-B*08:01 B2M MHCI -7894 chip0423_616050 -2.17 12.61 Chip2 T1D_6 T1D _ 6746 4161 NP140-148 FLU 0.6 102 NEG 158 4003 1 InfluenzaA NP HSNLNDATY Naive T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*01:01 B2M MHCI -7895 chip0423_396408 -1.14 6.79 Chip2 T1D_6 T1D TGTGCAGCAGATGCTTGGGAAACCAGTGGCTCTAGGTTGACCTTT CAADAWETSGSRLTF TRAV25*01 TRAJ10*01 1.0 22.0 TGTGCCAGCAGTTTTATAGCGGGGGACCCCTACAATGAGCAGTTCTTC CASSFIAGDPYNEQFF TRBV6-2*01,TRBV6-3*01 TRBJ2-1*01 46.0 2796.0 CAADAWETSGSRLTF_CASSFIAGDPYNEQFF 1 4862 INS-GSH-9 INS 0.91 19 NEG 169 4693 3 HomoSapiens INS GSHLVEALY Naive T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*01:01 B2M MHCI -7896 chip0423_860630 -0.6 10.57 Chip2 T1D_6 T1D TGTGTGGTGAACCAGGCAGGAACTGCTCTGATCTTT CVVNQAGTALIF TRAV12-1*01 TRAJ15*01 81.0 7359.0 TGTGCCAGCAAAAGCCGGTCCACTGAAGCTTTCTTT CASKSRSTEAFF TRBV12-3*01,TRBV12-4*01 TRBJ1-1*01 36.0 1772.0 CVVNQAGTALIF_CASKSRSTEAFF 1 6675 ZNT8-YAY-8 ZNT8 0.56 54 ZNT8-YAY-8 154 6521 3 HomoSapiens ZNT8 YAYAKWKL Naive T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-B*08:01 B2M MHCI -7897 chip0423_44240 7.98 12.08 Chip2 T1D_5 T1D TGTGCAGCGGCGGAAACCTCCTACGACAAGGTGATATTT CAAAETSYDKVIF TRAV13-1*01 TRAJ50*01 35.0 2065.0 TGTGCCAGCCAACTAGCGGGAGGCACCGGGGAGCTGTTTTTT CASQLAGGTGELFF TRBV24-1*01 TRBJ2-2*01 13.0 1202.0 CAAAETSYDKVIF_CASQLAGGTGELFF 131 3663 BZLF1-190-197 EBV 0.91 2156 NEG 162 3501 7 EBV BZLF1 RAKFKQLL transitional T cells between effector and memory populations PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-B*08:01 B2M MHCI -7898 chip0423_38188 15.06 12.58 Chip2 T1D_4 T1D TGTGCAATGGCCTTCAAGGGGGGCTTT CAMAFKGGF TRAV12-3*01 TRAJ27*01 22.0 1276.0 TGCGCCAGCAGTCTCCATCCATGGGGCTGCCTACAATGAGCAGTTCTTC CASSLHPW??gAAYNEQFF TRBV4-3*01 TRBJ2-1*01 2.0 36.0 CAMAFKGGF_CASSLHPW??gAAYNEQFF 1 2201 BZLF1-190-197 EBV 0.61 2156 NEG 151 2050 12 EBV BZLF1 RAKFKQLL effector T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-B*08:01 B2M MHCI -7899 chip0423_708814 14.16 10.88 Chip2 T1D_5 T1D TGTGCCAGCCAACTAGCGGGAGGCACCGGGGAGCTGTTTTTT CASQLAGGTGELFF TRBV24-1*01 TRBJ2-2*01 16.0 1030.0 _CASQLAGGTGELFF 69 3704 BZLF1-190-197 EBV 0.75 2156 NEG 158 3546 12 EBV BZLF1 RAKFKQLL effector T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-B*08:01 B2M MHCI -7900 chip0423_366706 13.39 11.24 Chip2 T1D_5 T1D TGTGCAGCTCTCGAAACCTCCTACGACAAGGTGATATTT CAALETSYDKVIF TRAV13-1*01 TRAJ50*01 1.0 31.0 TGTGCCAGCAGTCCCGACGGATCCACCGGGGAGCTGTTTTTT CASSPDGSTGELFF TRBV12-3*01,TRBV12-4*01 TRBJ2-2*01 39.0 2009.0 CAALETSYDKVIF_CASSPDGSTGELFF 14 2819 BZLF1-190-197 EBV 0.4 2156 NEG 171 2648 9 EBV BZLF1 RAKFKQLL effector memory T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-B*08:01 B2M MHCI -7901 chip0423_51702 12.22 10.31 Chip2 T1D_4 T1D TGTGCTGTGAGTGATGGAGAAAGAGCCCAGAAGCTGGTATTT CAVSDGERAQKLVF TRAV8-6*01 TRAJ54*01 42.0 1983.0 TGTGCCAGCAGCTTAACGGTTCTGGCAGGTCCAAACACTGAAGCTTTCTTT CASSLTVLAGPNTEAFF TRBV7-3*01 TRBJ1-1*01 27.0 904.0 CAVSDGERAQKLVF_CASSLTVLAGPNTEAFF 1 3893 BZLF1-190-197 EBV 0.82 2156 BZLF1-190-197 160 3733 9 EBV BZLF1 RAKFKQLL effector memory T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-B*08:01 B2M MHCI -7902 chip0423_642504 14.97 10.82 Chip2 T1D_5 T1D TGTGCTGTGGAGGATCAAGGGAGATCTTATAACACCGACAAGCTCATCTTT CAVEDQGRSYNTDKLIF TRAV2*01 TRAJ34*01 78.0 1838.0 TGTGCCAGCCAACTAGCGGGAGGCACCGGGGAGCTGTTTTTT CASQLAGGTGELFF TRBV24-1*01 TRBJ2-2*01 61.0 4165.0 CAVEDQGRSYNTDKLIF_CASQLAGGTGELFF 1 3799 BZLF1-190-197 EBV 0.56 2156 NEG 143 3656 12 EBV BZLF1 RAKFKQLL effector T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-B*08:01 B2M MHCI -7903 chip0423_185731 -3.99 7.53 Chip2 T1D_6 T1D TGTGCAATGAGCGCAGGTGGCTACAATAAGCTGATTTTT CAMSAGGYNKLIF TRAV12-3*01 TRAJ4*01 26.0 2139.0 TGTGCCCGCTCCGCCAGCCCTTCCTCCTACGCGCAGTACTTC CARSASPSSYAQYF TRBV6-1*01 TRBJ2-7*01 5.0 382.0 CAMSAGGYNKLIF_CARSASPSSYAQYF 1 7746 PGT-178 PGT 0.78 1480 PGT-178 155 7591 2 HomoSapiens PGT LLAGIGTVPI Naive T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*02:01 B2M MHCI -7904 chip0423_111562 11.33 7.12 Chip2 T1D_6 T1D TGTGCAGCAAGCAAGATAGAGGAGGAGGTGCTGATGGCCTCACCTTT CAASKIEga?GGADGLTF TRAV23/DV6*01 TRAJ45*01 39.0 1991.0 TGTGCCAGCAGCTTGGGACAGGCCTACGAGCAGTACTTC CASSLGQAYEQYF TRBV7-8*01 TRBJ2-7*01 42.0 2439.0 CAASKIEga?GGADGLTF_CASSLGQAYEQYF 8 5689 EBNA3A-193-201 EBV 0.86 1022 EBNA3A-193-201 183 5506 10 EBV EBNA3A FLRGRAYGL effector memory T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-B*08:01 B2M MHCI -7905 chip0423_371741 -1.69 7.44 Chip2 healthy_3 healthy TGTGCTGTGGGTCGAATTTAAGAAACCAGTGGCTCTAGGTTGACCTTT CAVGRI*ETSGSRLTF TRAV21*01,TRAV36/DV7*01 TRAJ10*01,TRAJ27*01 2.0 56.0 TGTGCCAGCAGCACAAGACTAGCGGGGGGCTACGAGCAGTACTTC CASSTRLAGGYEQYF TRBV13*01 TRBJ2-7*01 19.0 831.0 CAVGRI*ETSGSRLTF_CASSTRLAGGYEQYF 1 8442 PREINS-2-10 INS 0.62 37 NEG 151 8291 3 HomoSapiens PREINS ALWMRLLPL Naive T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*02:01 B2M MHCI -7906 chip0423_65386 6.81 13.11 Chip2 T1D_4 T1D TGTGCAATGAGAGAGGGCGATTCAAGCTTTGGAAATGAGAAATTAACCTTT CAMREGDSSFGNEKLTF TRAV14/DV4*01 TRAJ48*01 69.0 1224.0 CAMREGDSSFGNEKLTF_ 1 5994 M1 FLU 0.84 1250 M1 182 5812 7 InfluenzaA M1 GILGFVFTL transitional T cells between effector and memory populations PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*02:01 B2M MHCI -7907 chip0423_40182 -2.54 10.07 Chip2 T1D_5 T1D TGTGCCAGTAGTATAGCGGCAGCTGCCACTAATGAAAAACTGTTTTTT CASSIAAAATNEKLFF TRBV19*01 TRBJ1-4*01 3.0 116.0 _CASSIAAAATNEKLFF 1 6392 ZNT8-VTD-9 ZNT8 0.81 65 ZNT8-VTD-9 150 6242 3 HomoSapiens ZNT8 VTDAAHLLI Naive T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*01:01 B2M MHCI -7908 chip0423_799201 -2.03 16.08 Chip2 T1D_5 T1D TGTGCCATCAGCCAGGGACAGGACCCCTTATATGGCTACACCTTC CAISQGQDPLYGYTF TRBV10-3*01 TRBJ1-2*01 27.0 1368.0 _CAISQGQDPLYGYTF 1 1279 ZNT8-VTD-9 ZNT8 0.72 65 ZNT8-VTD-9 155 1124 1 HomoSapiens ZNT8 VTDAAHLLI Naive T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*01:01 B2M MHCI -7909 chip0423_472839 -4.4 9.07 Chip2 T1D_6 T1D TGTGCAATGAGCTTGGCTAACTTTGGAAATGAGAAATTAACCTTT CAMSLANFGNEKLTF TRAV12-3*01 TRAJ48*01 146.0 6993.0 TGCAGTGCCCAGAAGGGAACGGGGGGGCCCGGCACCAGGGAGCTGTTTTTT CSAQKGTGGPGTRELFF TRBV20-1*01 TRBJ2-2*01 19.0 1242.0 CAMSLANFGNEKLTF_CSAQKGTGGPGTRELFF 1 5272 PGT-178 PGT 0.86 1480 NEG 156 5116 2 HomoSapiens PGT LLAGIGTVPI Naive T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*02:01 B2M MHCI -7910 chip0423_449246 -1.53 10.13 Chip2 T1D_6 T1D TGTGCAATGAGCCTTTCTAACTTTGGAAACGAGAAATTAACCTTT CAMSLSNFGNEKLTF TRAV12-3*01 TRAJ48*01 33.0 1903.0 TGTGCCAGCGGTTGTGTTTCGATCGGACAGCCCAAAACCTGCAGCTATGGCTACACCTTC CASGCVSIGQPKTCSYGYTF TRBV6-2*01,TRBV6-3*01 TRBJ1-2*01 28.0 415.0 CAMSLSNFGNEKLTF_CASGCVSIGQPKTCSYGYTF 1 6299 PGT-178 PGT 0.61 1480 PGT-178 147 6152 3 HomoSapiens PGT LLAGIGTVPI Naive T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*02:01 B2M MHCI -7911 chip0423_165060 9.9 9.67 Chip2 T1D_5 T1D TGTGCCAGCTCCCAGTTGGGGGGGGTTTACAATGAGCAGTTCTTC CASSQLGGVYNEQFF TRBV7-9*01 TRBJ2-1*01 12.0 573.0 _CASSQLGGVYNEQFF 13 3523 BZLF1-190-197 EBV 0.88 2156 BZLF1-190-197 159 3364 9 EBV BZLF1 RAKFKQLL effector memory T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-B*08:01 B2M MHCI -7912 chip0423_807946 -2.69 10.31 Chip2 T1D_6 T1D TGTGCAGGCGCGCGACGGGACACAGGCTTTCAGAAACTTGTATTT CAGARRDTGFQKLVF TRAV27*01 TRAJ8*01 27.0 585.0 TGCGCCAGCAGTGAAGTGGGTGCGGGCTACGAGCAGTACTTC CASSEVGAGYEQYF TRBV2*01 TRBJ2-7*01 25.0 2104.0 CAGARRDTGFQKLVF_CASSEVGAGYEQYF 1 5434 EBV-LMP2A EBV 0.5 700 NEG 178 5256 4 EBV LMP2A CLGGLLTMV Naive T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*02:01 B2M MHCI -7913 chip0423_626448 -2.88 11.31 Chip2 T1D_6 T1D TGTGCTGCCGCGCTGGGAGGCTACAGAGCACTCACCTTT CAAALGGYRALTF TRAV13-1*01 TRAJ11*01 16.0 1087.0 TGCAGCGTTGAAGATCCCCTCGGGGGACAGGGAACCTACGAGCAGTACTTC CSVEDPLGGQGTYEQYF TRBV29-1*01 TRBJ2-7*01 4.0 35.0 CAAALGGYRALTF_CSVEDPLGGQGTYEQYF 1 5016 ZNT8-YAK-9 ZNT8 0.91 59 ZNT8-YAK-9 154 4862 4 HomoSapiens ZNT8 YAKWKLCSA Naive T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-B*08:01 B2M MHCI -7914 chip0423_613197 11.64 8.05 Chip2 T1D_6 T1D TGCATCCTCCCACTTGCTGGTGGTACTAGCTATGGAAAGCTGACATTT CILPLAGGTSYGKLTF TRAV26-2*01 TRAJ52*01 19.0 668.0 TGTGCCAGCAGCTTGGGACAGGCCTACGAGCAGTACTTC CASSLGQAYEQYF TRBV7-8*01 TRBJ2-7*01 17.0 928.0 CILPLAGGTSYGKLTF_CASSLGQAYEQYF 308 4686 EBNA3A-193-201 EBV 0.5 1022 NEG 166 4520 10 EBV EBNA3A FLRGRAYGL effector memory T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-B*08:01 B2M MHCI -7915 chip0423_67803 10.68 6.91 Chip2 T1D_6 T1D _ 6746 7127 EBNA3A-193-201 EBV 0.62 1022 EBNA3A-193-201 184 6943 10 EBV EBNA3A FLRGRAYGL effector memory T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-B*08:01 B2M MHCI -7916 chip0423_668094 10.75 7.37 Chip2 T1D_5 T1D TGTGCAGCAAGTGAAACCTCCTACGACAAGGTGATATTT CAASETSYDKVIF TRAV13-1*01 TRAJ50*01 13.0 1619.0 TGTGCCACCTCCTGGACAGGGGGACCTGGTGAGCAGTACTTC CATSWTGGPGEQYF TRBV12-3*01,TRBV12-4*01 TRBJ2-7*01 50.0 2705.0 CAASETSYDKVIF_CATSWTGGPGEQYF 1 6056 BZLF1-190-197 EBV 0.5 2156 BZLF1-190-197 185 5871 10 EBV BZLF1 RAKFKQLL effector memory T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-B*08:01 B2M MHCI -7917 chip0423_184235 -2.23 9.48 Chip2 T1D_4 T1D TGTGCCTTACTTAACGACTACAAGCTCAGCTTT CALLNDYKLSF TRAV38-1*01 TRAJ20*01 36.0 4604.0 TGCGCCAGCAGCTTTACGCCGGGACACTGGCAGCAGTTCTTC CASSFTPGHWQQFF TRBV5-1*01 TRBJ2-1*01 34.0 1802.0 CALLNDYKLSF_CASSFTPGHWQQFF 1 7128 PTPRN-805-813 PTPRN 0.76 11 PTPRN-805-813 142 6986 3 HomoSapiens PTPRN VIVMLTPLV Naive T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*02:01 B2M MHCI -7918 chip0423_156288 15.69 11.41 Chip2 T1D_4 T1D TGTGCCAGCAGCTTAGCGGTCGGAGAAGGGCCCCAGCATTTT CASSLAVGEGPQHF TRBV7-9*01 TRBJ1-5*01 60.0 2158.0 _CASSLAVGEGPQHF 113 2852 BZLF1-190-197 EBV 0.67 2156 BZLF1-190-197 148 2704 12 EBV BZLF1 RAKFKQLL effector T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-B*08:01 B2M MHCI -7919 chip0423_479133 14.15 7.63 Chip2 T1D_5 T1D TGTGCAGCACGTGAAACCTCCTACGACAAGGTGATATTT CAARETSYDKVIF TRAV13-1*01 TRAJ50*01 9.0 842.0 TGTGCCAGCACCTCACTCGGGGCGCGCGACGAGCAGTACTTC CASTSLGARDEQYF TRBV7-9*01 TRBJ2-7*01 10.0 920.0 CAARETSYDKVIF_CASTSLGARDEQYF 1 3743 BZLF1-190-197 EBV 0.4 2156 NEG 162 3581 10 EBV BZLF1 RAKFKQLL effector memory T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-B*08:01 B2M MHCI -7920 chip0423_450605 4.92 11.47 Chip2 healthy_4 healthy TGTGCCAGCCTATCTGACAGGGTTGAAAAACTGTTTTTT CASLSDRVEKLFF TRBV25-1*01 TRBJ1-4*01 60.0 2404.0 _CASLSDRVEKLFF 1 3069 M1 FLU 0.88 1250 NEG 162 2907 6 InfluenzaA M1 GILGFVFTL central memory T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*02:01 B2M MHCI -7921 chip0423_28102 -1.9 9.96 Chip2 T1D_6 T1D TGTGCAGAGCCTACAGGCTTTCCGCCACTTGTCTTT CAEPTGFPPLVF TRAV13-2*01 TRAJ8*01 12.0 837.0 TGCGCCAGCAGCCAACGGGATTCACCCCTCCACTTT CASSQRDSPLHF TRBV4-3*01 TRBJ1-6*01 2.0 35.0 CAEPTGFPPLVF_CASSQRDSPLHF 1 7181 GFAP-HLK-8 GFAP 0.88 28 GFAP-HLK-8 165 7016 3 HomoSapiens GFAP HLKRNIVV Naive T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-B*08:01 B2M MHCI -7922 chip0423_869868 -4.87 9.9 Chip2 healthy_3 healthy TGTGCCGTGAACCAGGGAGAAAAGCTTATCTTC CAVNQGEKLIF TRAV12-2*01 TRAJ23*01 14.0 1503.0 CAVNQGEKLIF_ 1 6210 PGT-178 PGT 0.86 1480 PGT-178 138 6072 2 HomoSapiens PGT LLAGIGTVPI Naive T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*02:01 B2M MHCI -7923 chip0423_837811 15.39 11.96 Chip2 T1D_5 T1D _ 6746 2048 BZLF1-190-197 EBV 0.5 2156 NEG 157 1891 12 EBV BZLF1 RAKFKQLL effector T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-B*08:01 B2M MHCI -7924 chip0423_589708 5.2 11.12 Chip2 healthy_3 healthy TGTGCTGTGCGGGGCTATGGTCAGAATTTTGTCTTT CAVRGYGQNFVF TRAV21*01 TRAJ26*01 24.0 2046.0 TGTGCCAGCAGCCTCGGGGGGCAATACAATGAGCAGTTCTTC CASSLGGQYNEQFF TRBV12-3*01,TRBV12-4*01 TRBJ2-1*01 2.0 113.0 CAVRGYGQNFVF_CASSLGGQYNEQFF 1 6952 GAD65-476-484 GAD65 0.57 8 NEG 162 6790 6 HomoSapiens GAD65 ELAEYLYNI central memory T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*02:01 B2M MHCI -7925 chip0423_441217 6.31 9.99 Chip2 T1D_5 T1D TGTGCAATGAGCATATCTAACTTTGGAAATGAGAAATTAACCTTT CAMSISNFGNEKLTF TRAV12-3*01 TRAJ48*01 20.0 610.0 TGTGCTAGTGGCCACCTGGGACAGAAAACCTACGAGCAGTACTTC CASGHLGQKTYEQYF TRBV12-5*01 TRBJ2-7*01 10.0 408.0 CAMSISNFGNEKLTF_CASGHLGQKTYEQYF 1 4670 BZLF1-190-197 EBV 0.4 2156 NEG 152 4518 6 EBV BZLF1 RAKFKQLL central memory T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-B*08:01 B2M MHCI -7926 chip0423_350341 -2.29 9.3 Chip2 T1D_4 T1D TGTGCCAGCAGTTTATTACAGGCTACCACAGATACGCAGTATTTT CASSLLQATTDTQYF TRBV12-3*01,TRBV12-4*01 TRBJ2-3*01 35.0 1302.0 _CASSLLQATTDTQYF 1 7925 EBNA3A-158-166 EBV 0.69 444 NEG 147 7778 3 EBV EBNA3A QAKWRLQTL Naive T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-B*08:01 B2M MHCI -7927 chip0423_846994 8.76 8.4 Chip2 healthy_3 healthy TGTGCCAGCAGTTACGGGTGGGGGGGCTCCTACAATGAGCAGTTCTTC CASSYGWGGSYNEQFF TRBV6-2*01,TRBV6-3*01 TRBJ2-1*01 3.0 159.0 _CASSYGWGGSYNEQFF 1 2907 PB1-590-599 FLU 0.5 37 NEG 149 2758 8 InfluenzaA PB1 LVSDGGPNLY effector memory T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*01:01 B2M MHCI -7928 chip0423_728602 -0.86 9.69 Chip2 T1D_5 T1D TGTGCCAGTAGTATCGCGGGAAGAGAAGAAGCTTTCTTT CASSIAGREEAFF TRBV19*01 TRBJ1-1*01 114.0 5326.0 _CASSIAGREEAFF 1 7732 ZNT8-PTE-9 ZNT8 0.62 18 ZNT8-PTE-9 163 7569 3 HomoSapiens ZNT8 PTEKGANEY Naive T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*01:01 B2M MHCI -7929 chip0423_183763 7.46 12.53 Chip2 healthy_3 healthy TGTGCCCCTGCATCAGGAGGAAGCTACATACCTACATTT CAPASGGSYIPTF TRAV24*01 TRAJ6*01 34.0 2687.0 TGTGCCAGCTGCCGGGACGGGACCTACGAGCAGTACTTC CASCRDGTYEQYF TRBV10-3*01 TRBJ2-7*01 21.0 1302.0 CAPASGGSYIPTF_CASCRDGTYEQYF 10 4105 NP44-52 FLU 0.86 474 NP44-52 142 3963 7 InfluenzaA NP CTELKLSDY transitional T cells between effector and memory populations PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*01:01 B2M MHCI -7930 chip0423_740718 14.9 10.58 Chip2 T1D_5 T1D TGTGACAGCTCCCAGATGGGGGGGTTTACACTGCGCAGCTCTTC CDSSQMGg?gVYTAQLF TRBV7-9*01 TRBJ2-1*01 9.0 828.0 _CDSSQMGg?gVYTAQLF 1 4314 BZLF1-190-197 EBV 0.79 2156 BZLF1-190-197 161 4153 12 EBV BZLF1 RAKFKQLL effector T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-B*08:01 B2M MHCI -7931 chip0423_446085 -2.45 10.42 Chip2 T1D_4 T1D TGTGCCAGCAGCTCCTCCTACGAGCAGTACTTC CASSSSYEQYF TRBV7-9*01 TRBJ2-7*01 19.0 1125.0 _CASSSSYEQYF 1 5062 GAD65-476-484 GAD65 0.59 8 GAD65-476-484 153 4909 3 HomoSapiens GAD65 ELAEYLYNI Naive T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*02:01 B2M MHCI -7932 chip0423_327359 11.65 12.64 Chip2 T1D_4 T1D TGTGCCAGCAGCTTAGCGGTCGGAGAAGGGCCCCAGCATTTT CASSLAVGEGPQHF TRBV7-9*01 TRBJ1-5*01 47.0 1936.0 _CASSLAVGEGPQHF 113 2575 BZLF1-190-197 EBV 0.93 2156 BZLF1-190-197 137 2438 11 EBV BZLF1 RAKFKQLL effector T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-B*08:01 B2M MHCI -7933 chip0423_646369 5.98 11.93 Chip2 healthy_5 healthy TGCGCCAGCAGTCAATTACTATGACCGGTGACATAATGAAAAACTGTTTTTT CASSQLL*cc??gg*HNEKLFF TRBV4-3*01 TRBJ1-4*01 33.0 718.0 _CASSQLL*cc??gg*HNEKLFF 1 4514 BZLF1-190-197 EBV 0.55 2156 NEG 134 4380 7 EBV BZLF1 RAKFKQLL transitional T cells between effector and memory populations PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-B*08:01 B2M MHCI -7934 chip0423_566227 -2.14 7.86 Chip2 T1D_6 T1D TCTGCTCTCACTTACGAGGAATTCTGGCGGCCACCATGGCTATCTCATCTTT SALTYEEFtg??gcGHHGYLIF TRAV19*01 TRAJ42*01 41.0 1701.0 TGCGCCAGCAGTGAGTACAGGGCCTCCTACAATGAGCAGTTCTTC CASSEYRASYNEQFF TRBV10-2*01 TRBJ2-1*01 11.0 794.0 SALTYEEFtg??gcGHHGYLIF_CASSEYRASYNEQFF 1 8878 POL-132-140 HIV 0.56 37 NEG 138 8740 3 HIV-1 POL LVGPTPVNI Naive T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*02:01 B2M MHCI -7935 chip0423_371773 6.3 12.87 Chip2 healthy_3 healthy TGTGCCCAAATTTTTTTTCGGTTGCTACTATTTGCTGATCTTT CAQIFFR??tCYYLLIF TRAV19*01 TRAJ4*01 7.0 1136.0 CAQIFFR??tCYYLLIF_ 1 5561 NP44-52 FLU 0.71 474 NP44-52 129 5432 7 InfluenzaA NP CTELKLSDY transitional T cells between effector and memory populations PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*01:01 B2M MHCI -7936 chip0423_200227 13.51 12.01 Chip2 T1D_5 T1D TGTGCCATCAGTGAGCTCCACTCGGACGGCCAAGAGACCCAGTACTTC CAISELHSDGQETQYF TRBV10-3*01 TRBJ2-5*01 57.0 2473.0 _CAISELHSDGQETQYF 2 2668 BZLF1-190-197 EBV 0.4 2156 NEG 141 2527 12 EBV BZLF1 RAKFKQLL effector T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-B*08:01 B2M MHCI -7937 chip0423_166062 8.56 10.02 Chip2 healthy_4 healthy TGCATCCTTCCCCTAGCTGGTGGTGCTCGCTATGGACAGCTGACATTT CILPLAGGARYGQLTF TRAV26-2*01 TRAJ52*01 7.0 414.0 TGTGCCAGCAGCTCCGGACAGGCCTACGAGCAGTACTTC CASSSGQAYEQYF TRBV7-8*01 TRBJ2-7*01 30.0 1729.0 CILPLAGGARYGQLTF_CASSSGQAYEQYF 1 4688 EBNA3A-193-201 EBV 1.0 1022 NEG 153 4535 8 EBV EBNA3A FLRGRAYGL effector memory T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-B*08:01 B2M MHCI -7938 chip0423_707302 11.8 8.59 Chip2 T1D_4 T1D TGTGCACCTTTCAACTTCAACAAATTTTACTTT CAPFNFNKFYF TRAV13-1*01 TRAJ21*01 24.0 2705.0 TGTGCCAGCAGCCTTAGGGGGGGCCAAGAGACCCAGTACTTC CASSLRGGQETQYF TRBV7-3*01 TRBJ2-5*01 25.0 1174.0 CAPFNFNKFYF_CASSLRGGQETQYF 4 4797 BZLF1-190-197 EBV 0.5 2156 NEG 189 4608 10 EBV BZLF1 RAKFKQLL effector memory T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-B*08:01 B2M MHCI -7939 chip0423_616737 -1.5 6.97 Chip2 T1D_5 T1D TGTGCAATGAGAGAGCCGTATTCAGGAGGAGGTGCTGACGGACTCACCTTT CAMREPYSGGGADGLTF TRAV14/DV4*01 TRAJ45*01 48.0 1620.0 CTGTGCCAGCAGCGCTGGAGGGCCAGCGGATCAGCCCCAGCATTTT LCQQRWRgc??caADQPQHF TRBV9*01 TRBJ1-5*01 24.0 1355.0 CAMREPYSGGGADGLTF_LCQQRWRgc??caADQPQHF 1 7060 EBNA3A-158-166 EBV 0.64 444 NEG 145 6915 3 EBV EBNA3A QAKWRLQTL Naive T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-B*08:01 B2M MHCI -7940 chip0423_209050 11.7 12.06 Chip2 T1D_4 T1D TGTGCCAGCAGCTTAGCGGTCGGAGAAGGGCCCCAGCATTTT CASSLAVGEGPQHF TRBV7-9*01 TRBJ1-5*01 15.0 623.0 _CASSLAVGEGPQHF 113 2948 BZLF1-190-197 EBV 0.88 2156 BZLF1-190-197 177 2771 11 EBV BZLF1 RAKFKQLL effector T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-B*08:01 B2M MHCI -7941 chip0423_451483 11.1 10.49 Chip2 T1D_4 T1D TGTGTGGTGAGCTGAATTATGGAGGAAGCCAAAGAAATCTCATCTTT CVVS*IMga?GSQRNLIF TRAV10*01 TRAJ42*01 57.0 1621.0 TGTGCCAGCAGCTTAGGAGGGGGAGAGGGGGCCAGTGAGCAGTTCTTC CASSLGGGEGASEQFF TRBV7-6*01 TRBJ2-1*01 47.0 2047.0 CVVS*IMga?GSQRNLIF_CASSLGGGEGASEQFF 1 4604 EBNA3A-193-201 EBV 0.4 1022 NEG 163 4441 9 EBV EBNA3A FLRGRAYGL effector memory T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-B*08:01 B2M MHCI -7942 chip0423_130539 -2.7 14.38 Chip2 T1D_6 T1D TGTGCCGTATCGAACAGAGATGACAAGATCATCTTT CAVSNRDDKIIF TRAV12-2*01 TRAJ30*01 46.0 3072.0 TGCGCCAGCAGCTTGGGTGGGAACGAGCAGTACTTC CASSLGGNEQYF TRBV5-1*01 TRBJ2-7*01 51.0 3481.0 CAVSNRDDKIIF_CASSLGGNEQYF 1 3435 GP160-311-320 HIV 0.56 109 NEG 142 3293 1 HIV-1 GP160 RGPGRAFVTI Naive T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*02:01 B2M MHCI -7943 chip0423_866200 7.57 12.65 Chip2 T1D_6 T1D TGTGCCTCCCAAGGAGGAAGCCAAGGAAATCTCATCTTT CASQGGSQGNLIF TRAV20*01 TRAJ42*01 6.0 300.0 CASQGGSQGNLIF_ 7 4814 ROTA-VP6 ROTA 0.77 47 ROTA-VP6 170 4644 7 RotavirusA VP6 TLLANVTAV transitional T cells between effector and memory populations PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*02:01 B2M MHCI -7944 chip0423_767128 -2.51 10.47 Chip2 T1D_6 T1D TGTGCAATGAGAGGATCCCCCCGGGGGGGGGGAACAACCTCACCTTT CAMRGSPcg?GGGNNLTF TRAV14/DV4*01 TRAJ10*01 49.0 1917.0 CAMRGSPcg?GGGNNLTF_ 1 6265 NP44-52 FLU 0.78 474 NEG 142 6123 3 InfluenzaA NP CTELKLSDY Naive T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*01:01 B2M MHCI -7945 chip0423_591730 6.84 9.93 Chip2 T1D_6 T1D TGTGCAATGAGAGTAGGGAAAGGGTTTCCGGTATGTTTACCTG CAMRVGK??gGFRYVYL TRAV14/DV4*01 TRAJ13*01 4.0 69.0 TGCGCCAGCAGTGACATTAGGGAGGGGCAGGGTGAAGCTTTCTTT CASSDIREGQGEAFF TRBV10-2*01 TRBJ1-1*01 32.0 1246.0 CAMRVGK??gGFRYVYL_CASSDIREGQGEAFF 1 11896 EBNA3A-158-166 EBV 0.62 444 EBNA3A-158-166 188 11708 7 EBV EBNA3A QAKWRLQTL transitional T cells between effector and memory populations PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-B*08:01 B2M MHCI -7946 chip0423_555523 -1.82 9.66 Chip2 T1D_6 T1D TGTGCTGTCTCTCCTTCCCGGCTCTGCCTGTCCACTCACCTTT CAVSPSR??cSACPLTF TRAV36/DV7*01 TRAJ44*01 36.0 1927.0 TGTGCCAGCAGCGGGAAGGCTCTTTGGGACAGCTCCTACGAGCAGTACTTC CASSGKALWDSSYEQYF TRBV5-4*01 TRBJ2-7*01 33.0 954.0 CAVSPSR??cSACPLTF_CASSGKALWDSSYEQYF 1 8051 GP160-814-822 HIV 0.45 7 NEG 150 7901 3 HIV-1 GP160 LLNATDIAV Naive T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*02:01 B2M MHCI -7947 chip0423_505253 12.47 11.11 Chip2 T1D_4 T1D TGCATCGTCAGAGTCGTGTGTACGGCACTGCCAGTCCACTCACCTTT CIVRVVCac?GTASPLTF TRAV26-1*01 TRAJ44*01 33.0 1979.0 TGTGCCAGCAGCTTAGCGGTCGGAGAAGGGCCCCAGCATTTT CASSLAVGEGPQHF TRBV7-9*01 TRBJ1-5*01 23.0 526.0 CIVRVVCac?GTASPLTF_CASSLAVGEGPQHF 1 3297 BZLF1-190-197 EBV 0.86 2156 BZLF1-190-197 156 3141 9 EBV BZLF1 RAKFKQLL effector memory T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-B*08:01 B2M MHCI -7948 chip0423_151768 8.98 11.21 Chip2 healthy_4 healthy _ 6746 6653 EBV-LMP2A EBV 0.72 700 NEG 164 6489 9 EBV LMP2A CLGGLLTMV effector memory T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*02:01 B2M MHCI -7949 chip0423_50281 9.86 8.61 Chip2 T1D_6 T1D TGCATCCTCCCACTTGCTGGTGGTACTAGCTATGGAAAGCTGACATTT CILPLAGGTSYGKLTF TRAV26-2*01 TRAJ52*01 68.0 4288.0 TGTGCAGCAAGCAAGATAGAGGAGGAGGTGCTGACGGACTCACCTTT CAASKIEga?GGADGLTF TRAV23/DV6*01 TRAJ45*01 46.0 2015.0 0.34 TGTGCCAGCAGCTTGGGACAGGCCTACGAGCAGTACTTC CASSLGQAYEQYF TRBV7-8*01 TRBJ2-7*01 4.0 295.0 CILPLAGGTSYGKLTF_CASSLGQAYEQYF 308 4270 EBNA3A-193-201 EBV 0.5 1022 NEG 171 4099 8 EBV EBNA3A FLRGRAYGL effector memory T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-B*08:01 B2M MHCI -7950 chip0423_377540 -1.89 9.93 Chip2 T1D_6 T1D TGTGTGGTGGCCCTATCTAACTTTGGAAATGAGAAATTAACCTTT CVVALSNFGNEKLTF TRAV12-1*01 TRAJ48*01 61.0 1686.0 CVVALSNFGNEKLTF_ 1 6759 PGT-178 PGT 0.8 1480 PGT-178 155 6604 3 HomoSapiens PGT LLAGIGTVPI Naive T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*02:01 B2M MHCI -7951 chip0423_44831 -4.05 8.79 Chip2 T1D_6 T1D TGTGCCAGCAGCCTTCTCGGACAGATACCCTACGAGCAGTACTTC CASSLLGQIPYEQYF TRBV13*01 TRBJ2-7*01 27.0 1608.0 _CASSLLGQIPYEQYF 1 6561 PTPRN-HAR-8 PTPRN 0.56 13 NEG 156 6405 2 HomoSapiens PTPRN HARIKLKV Naive T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-B*08:01 B2M MHCI -7952 chip0423_699158 -2.68 9.8 Chip2 T1D_4 T1D TGTGCCAGTACCCCTGGAAACACCATATATTTT CASTPGNTIYF TRBV19*01 TRBJ1-3*01 4.0 165.0 _CASTPGNTIYF 1 5881 PGT-178 PGT 0.9 1480 NEG 155 5726 3 HomoSapiens PGT LLAGIGTVPI Naive T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*02:01 B2M MHCI -7953 chip0423_597997 6.45 11.95 Chip2 T1D_6 T1D _ 6746 6390 M1 FLU 0.58 1250 NEG 197 6193 7 InfluenzaA M1 GILGFVFTL transitional T cells between effector and memory populations PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*02:01 B2M MHCI -7954 chip0423_407692 9.63 9.31 Chip2 T1D_5 T1D TGTGCCAGCAGTTTATTGCGCTCCTATAATTCACCCCTCCACTTT CASSLLRSYNSPLHF TRAV9-1*01 TRAJ11*01 1.0 11.0 TGTGCCAGCAGTTTATTGAGCTCCTATAATTCACCCCTCCACTTT CASSLLSSYNSPLHF TRBV12-3*01,TRBV12-4*01 TRBJ1-6*01 32.0 1656.0 CASSLLRSYNSPLHF_CASSLLSSYNSPLHF 1 6216 BZLF1-190-197 EBV 0.84 2156 BZLF1-190-197 160 6056 8 EBV BZLF1 RAKFKQLL effector memory T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-B*08:01 B2M MHCI -7955 chip0423_388048 8.45 9.16 Chip2 T1D_5 T1D TGTGCAGCAGTAGAAACCTCCTACGACAAGGTGATATTT CAAVETSYDKVIF TRAV13-1*01 TRAJ50*01 1.0 26.0 TGTGCCAGCAGCTACCTAGGGACAGGGGGCTCCTACGAGCAGTACTTC CASSYLGTGGSYEQYF TRBV7-9*01 TRBJ2-7*01 71.0 3956.0 CAAVETSYDKVIF_CASSYLGTGGSYEQYF 1 6347 BZLF1-190-197 EBV 0.73 2156 NEG 161 6186 8 EBV BZLF1 RAKFKQLL effector memory T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-B*08:01 B2M MHCI -7956 chip0423_313738 -3.64 8.68 Chip2 T1D_6 T1D TGTGCCAGCAGCTCCAGCCTAATAGCAGGGGAAAAGGCTTTCTTT CASSSSLIAGEKAFF TRBV7-3*01 TRBJ1-1*01 23.0 815.0 _CASSSSLIAGEKAFF 1 5551 PGT-178 PGT 0.54 1480 NEG 170 5381 2 HomoSapiens PGT LLAGIGTVPI Naive T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*02:01 B2M MHCI -7957 chip0423_247998 10.89 10.98 Chip2 T1D_5 T1D TGTGCAGCAACGGAAACCTCCTACGACAAGGTGATATTT CAATETSYDKVIF TRAV13-1*01 TRAJ50*01 34.0 3107.0 TGTGCCAGCAGTCCCCCGGGGAGAAATGAAAAACTGTTTTTT CASSPPGRNEKLFF TRBV12-3*01,TRBV12-4*01 TRBJ1-4*01 35.0 1061.0 CAATETSYDKVIF_CASSPPGRNEKLFF 34 4188 BZLF1-190-197 EBV 0.58 2156 NEG 155 4033 9 EBV BZLF1 RAKFKQLL effector memory T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-B*08:01 B2M MHCI -7958 chip0423_146404 6.42 12.17 Chip2 T1D_6 T1D TGTGCCGTGAAGACGCTTTACCAACTCACTTTC CAVKTLYQLTF TRAV8-1*01 TRAJ28*01 20.0 2091.0 TGTGCCAGCAGCCAAGGTTATAGCGGGGCAGGAGAGACCCAGTACTTC CASSQGYSGAGETQYF TRBV4-2*01 TRBJ2-5*01 9.0 326.0 CAVKTLYQLTF_CASSQGYSGAGETQYF 1 6592 EBV-BRLF1 EBV 0.61 1264 EBV-BRLF1 189 6403 7 EBV BRLF1 YVLDHLIVV transitional T cells between effector and memory populations PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*02:01 B2M MHCI -7959 chip0423_556461 10.92 13.05 Chip2 T1D_5 T1D _ 6746 3055 BZLF1-190-197 EBV 0.56 2156 NEG 131 2924 11 EBV BZLF1 RAKFKQLL effector T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-B*08:01 B2M MHCI -7960 chip0423_465905 -3.01 10.31 Chip2 healthy_4 healthy TGCGCCAGCAGCCTTGCCCTAGCGGGGATCACAGATACGCAGTATTTT CASSLALAGITDTQYF TRBV4-3*01 TRBJ2-3*01 20.0 594.0 _CASSLALAGITDTQYF 1 4594 MART1-ALA MART1 0.56 269 NEG 146 4448 3 HomoSapiens MART1 ALAGIGILTV Naive T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*02:01 B2M MHCI -7961 chip0423_790235 13.2 7.09 Chip2 T1D_5 T1D TGTGCCAGCAGCTTAACGCAGGGCCGATACAATGAGCAGTTCTTC CASSLTQGRYNEQFF TRBV7-9*01 TRBJ2-1*01 36.0 1344.0 _CASSLTQGRYNEQFF 1 3520 BZLF1-190-197 EBV 0.5 2156 NEG 176 3344 10 EBV BZLF1 RAKFKQLL effector memory T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-B*08:01 B2M MHCI -7962 chip0423_186145 10.04 10.87 Chip2 T1D_6 T1D TGTGCCAACAGCTTGGGACAGGCCTACGAGCAGTACTTC CANSLGQAYEQYF TRBV7-8*01 TRBJ2-7*01 14.0 825.0 _CANSLGQAYEQYF 2 4369 EBNA3A-193-201 EBV 0.73 1022 NEG 155 4214 9 EBV EBNA3A FLRGRAYGL effector memory T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-B*08:01 B2M MHCI -7963 chip0423_11894 13.71 11.12 Chip2 T1D_5 T1D TGTGCAGCGGCGGAAACCTCCTACGACAAGGTGATATTT CAAAETSYDKVIF TRAV13-1*01 TRAJ50*01 2.0 35.0 TGTGCCAGCCAACTAGCGGGAGGCACCGGGGAGCTGTTTTTT CASQLAGGTGELFF TRBV24-1*01 TRBJ2-2*01 68.0 3729.0 CAAAETSYDKVIF_CASQLAGGTGELFF 131 4229 BZLF1-190-197 EBV 0.9 2156 NEG 159 4070 7 EBV BZLF1 RAKFKQLL transitional T cells between effector and memory populations PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-B*08:01 B2M MHCI -7964 chip0423_532796 14.01 8.49 Chip2 T1D_4 T1D TGCATCGCCAGAGAGGGGGGGGGTGCTGACGGACTCGCCTTT CIAREGGGADGLAF TRAV26-1*01 TRAJ45*01 25.0 1981.0 TGTGCCAGCAGCTTAGCGGTCGGAGAAGGGCCCCAGCATTTT CASSLAVGEGPQHF TRBV7-9*01 TRBJ1-5*01 102.0 3962.0 CIAREGGGADGLAF_CASSLAVGEGPQHF 1 3491 BZLF1-190-197 EBV 0.89 2156 BZLF1-190-197 165 3326 12 EBV BZLF1 RAKFKQLL effector T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-B*08:01 B2M MHCI -7965 chip0423_760079 11.96 7.14 Chip2 T1D_6 T1D TGCATCCTCCCACTTGCTGGTGGTACTAGCTATGGAAAGCTGACATTT CILPLAGGTSYGKLTF TRAV26-2*01 TRAJ52*01 9.0 512.0 TGTGCCAGCAGCTTGGGACAGGCCTACGAGCAGTACTTC CASSLGQAYEQYF TRBV7-8*01 TRBJ2-7*01 32.0 1653.0 CILPLAGGTSYGKLTF_CASSLGQAYEQYF 308 5634 EBNA3A-193-201 EBV 0.79 1022 EBNA3A-193-201 172 5462 10 EBV EBNA3A FLRGRAYGL effector memory T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-B*08:01 B2M MHCI -7966 chip0423_46835 12.14 8.72 Chip2 T1D_6 T1D TGCATCCTCCCACTTGCTGGTGGTACTAGCTATGGAAAGCTGACATTT CILPLAGGTSYGKLTF TRAV26-2*01 TRAJ52*01 78.0 3732.0 TGTGCCAGCAGCTTGGGACAGGCCTACGAGCAGTACTTC CASSLGQAYEQYF TRBV7-8*01 TRBJ2-7*01 18.0 962.0 CILPLAGGTSYGKLTF_CASSLGQAYEQYF 308 3145 EBNA3A-193-201 EBV 0.91 1022 NEG 156 2989 10 EBV EBNA3A FLRGRAYGL effector memory T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-B*08:01 B2M MHCI -7967 chip0423_707387 7.79 9.97 Chip2 T1D_5 T1D TGTGCCAGCAGCTCCTTAAGCGGGGGGGCAGGAAATGAGCAGTTCTTC CASSSLSGGAGNEQFF TRBV7-9*01 TRBJ2-1*01 42.0 1892.0 _CASSSLSGGAGNEQFF 33 6804 BZLF1-190-197 EBV 0.5 2156 BZLF1-190-197 176 6628 8 EBV BZLF1 RAKFKQLL effector memory T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-B*08:01 B2M MHCI -7968 chip0423_623700 6.58 11.24 Chip2 healthy_3 healthy TGTGCAGCAAGTATGGGATATGGAAACAAACTGGTCTTT CAASMGYGNKLVF TRAV13-1*01 TRAJ47*01 56.0 2251.0 CAASMGYGNKLVF_ 4 8800 NP44-52 FLU 0.68 474 NP44-52 161 8639 7 InfluenzaA NP CTELKLSDY transitional T cells between effector and memory populations PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*01:01 B2M MHCI -7969 chip0423_209849 -1.57 8.68 Chip2 T1D_4 T1D TGTGCAATGAGGCTTTCAAACTTTGGAAATGAGAAATTAACCTTT CAMRLSNFGNEKLTF TRAV12-3*01 TRAJ48*01 61.0 2032.0 CAMRLSNFGNEKLTF_ 2 5854 PGT-178 PGT 0.75 1480 PGT-178 145 5709 3 HomoSapiens PGT LLAGIGTVPI Naive T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*02:01 B2M MHCI -7970 chip0423_208535 11.89 10.0 Chip2 T1D_4 T1D TGTGCTGTGAGTGATGGAGAAGGAGCCCAGAAGCTGGTATTT CAVSDGEGAQKLVF TRAV8-6*01 TRAJ54*01 46.0 1449.0 TGTGCCAGCAGCTTAACGGTTCTGGCAGGTCCAAACACTGAAGCTTTCTTT CASSLTVLAGPNTEAFF TRBV7-3*01 TRBJ1-1*01 38.0 1219.0 CAVSDGEGAQKLVF_CASSLTVLAGPNTEAFF 44 5038 BZLF1-190-197 EBV 0.79 2156 BZLF1-190-197 196 4842 9 EBV BZLF1 RAKFKQLL effector memory T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-B*08:01 B2M MHCI -7971 chip0423_839519 6.73 10.26 Chip2 T1D_6 T1D TGTGCCAGCAGAGCAAACAGTCTCTACGAGCAGTACTTC CASRANSLYEQYF TRBV2*01 TRBJ2-7*01 8.0 849.0 _CASRANSLYEQYF 3 6427 NP140-148 FLU 0.84 102 NP140-148 166 6261 6 InfluenzaA NP HSNLNDATY central memory T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*01:01 B2M MHCI -7972 chip0423_139913 10.26 11.51 Chip2 T1D_4 T1D TGCATCGTCAGCGCGCGCGGCGGTGCTGCCGGTCTCTCCTTT CIVSARGGAAGLSF TRAV26-1*01 TRAJ45*01 16.0 889.0 TGTGCCAGCAGCTTAGCGGTCGGAGAAGGGCCCCGGCATTTT CASSLAVGEGPRHF TRBV7-9*01 TRBJ1-5*01 16.0 544.0 CIVSARGGAAGLSF_CASSLAVGEGPRHF 1 3915 BZLF1-190-197 EBV 0.93 2156 BZLF1-190-197 202 3713 9 EBV BZLF1 RAKFKQLL effector memory T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-B*08:01 B2M MHCI -7973 chip0423_79290 6.16 14.15 Chip2 healthy_3 healthy TGTGCCGTGCGGCAAAGCTGCAGGCAACAAGCTAACTTTT CAVRQStg??caGNKLTF TRAV8-1*01 TRAJ17*01 24.0 1414.0 CAVRQStg??caGNKLTF_ 1 7345 NP44-52 FLU 0.74 474 NP44-52 146 7199 7 InfluenzaA NP CTELKLSDY transitional T cells between effector and memory populations PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*01:01 B2M MHCI -7974 chip0423_21979 14.87 8.86 Chip2 T1D_4 T1D TGCATCGTCAGAGAGGGAGGAGGTGCTGACGGACTCACCTTT CIVREGGGADGLTF TRAV26-1*01 TRAJ45*01 19.0 1174.0 TGTGCCAGCAGCTTAGCGGTCGGAGAAGGGCCCCAGCATTTT CASSLAVGEGPQHF TRBV7-9*01 TRBJ1-5*01 25.0 900.0 CIVREGGGADGLTF_CASSLAVGEGPQHF 68 2893 BZLF1-190-197 EBV 0.79 2156 BZLF1-190-197 169 2724 12 EBV BZLF1 RAKFKQLL effector T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-B*08:01 B2M MHCI -7975 chip0423_491353 6.76 14.44 Chip2 T1D_5 T1D TGTGCAGGATTCCCGTGGGCTGCAGGCAACAAGCTAACTTTT CAGFPWAAGNKLTF TRAV25*01 TRAJ17*01 3.0 159.0 CAGFPWAAGNKLTF_ 3 3421 NP44-52 FLU 0.76 474 NP44-52 136 3285 7 InfluenzaA NP CTELKLSDY transitional T cells between effector and memory populations PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*01:01 B2M MHCI -7976 chip0423_110694 9.28 11.67 Chip2 T1D_5 T1D TGTGCAGCGGGGGAAACCTCCTACGACAAGGTGATATTT CAAGETSYDKVIF TRAV13-1*01 TRAJ50*01 22.0 2017.0 TGTGCCAGCAGCTTGTTAGGCAGTCAGAACACTGAAGCTTTCTTT CASSLLGSQNTEAFF TRBV7-9*01 TRBJ1-1*01 51.0 1935.0 CAAGETSYDKVIF_CASSLLGSQNTEAFF 11 3543 BZLF1-190-197 EBV 0.56 2156 NEG 157 3386 9 EBV BZLF1 RAKFKQLL effector memory T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-B*08:01 B2M MHCI -7977 chip0423_744884 11.13 10.57 Chip2 T1D_5 T1D TGTGCTGTGGAGGAGCAAGGGAGATCTTATAACACCGTCATGCTCATCTTT CAVEEQGRSYNTVMLIF TRAV2*01 TRAJ34*01 6.0 170.0 TGTGCCAGCAGCTCCTTAAGCGGAGGGGCAGGAAATGAGCAGTTCTTC CASSSLSGGAGNEQFF TRBV7-9*01 TRBJ2-1*01 9.0 356.0 CAVEEQGRSYNTVMLIF_CASSSLSGGAGNEQFF 1 4444 BZLF1-190-197 EBV 0.4 2156 NEG 149 4295 9 EBV BZLF1 RAKFKQLL effector memory T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-B*08:01 B2M MHCI -7978 chip0423_659113 14.69 10.92 Chip2 T1D_5 T1D TGTGCTAGTGGTTTGGTCGGGCAGGAGACCGGGGAGCTGTTTTTT CASGLVGQETGELFF TRBV12-5*01 TRBJ2-2*01 40.0 2104.0 _CASGLVGQETGELFF 1 3616 BZLF1-190-197 EBV 1.0 2156 NEG 164 3452 12 EBV BZLF1 RAKFKQLL effector T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-B*08:01 B2M MHCI -7979 chip0423_150408 15.43 9.76 Chip2 T1D_6 T1D TGCATCCTCCCACTTGCTGGTGGTACTAGCTATGGAAAGCTGACATTT CILPLAGGTSYGKLTF TRAV26-2*01 TRAJ52*01 17.0 747.0 TGTGCCAGCAGCTTGGGACAGGCCTACGAGCAGTACTTC CASSLGQAYEQYF TRBV7-8*01 TRBJ2-7*01 22.0 1187.0 CILPLAGGTSYGKLTF_CASSLGQAYEQYF 308 5073 EBNA3A-193-201 EBV 0.78 1022 EBNA3A-193-201 170 4903 12 EBV EBNA3A FLRGRAYGL effector T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-B*08:01 B2M MHCI -7980 chip0423_830374 -4.13 10.14 Chip2 healthy_3 healthy TGTGCAATGTCCATATCTAACTTTGGAAATGAGAAATTAACCTTT CAMSISNFGNEKLTF TRAV12-3*01 TRAJ48*01 125.0 3951.0 TGTGCCAGCAGCTTAGTGGTTCCAGGGGACTATGGCTACACCTTC CASSLVVPGDYGYTF TRBV7-2*01 TRBJ1-2*01 25.0 1088.0 CAMSISNFGNEKLTF_CASSLVVPGDYGYTF 1 4847 PGT-178 PGT 0.89 1480 PGT-178 161 4686 2 HomoSapiens PGT LLAGIGTVPI Naive T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*02:01 B2M MHCI -7981 chip0423_217415 -3.5 8.35 Chip2 healthy_3 healthy TCTGCAGCGTTCCGGGGCCCACTGAAGCTTTCTTT SAAFRgg?PTEAFF TRAV24*01,TRAV7*01 TRAJ40*01 2.0 4.0 TGCAGCGTTCCGGGGCCCGCTGAAGCTTTCTTT CSVPGPAEAFF TRBV29-1*01 TRBJ1-1*01 141.0 13314.0 SAAFRgg?PTEAFF_CSVPGPAEAFF 1 7961 EBV-LMP2A EBV 0.45 700 NEG 156 7805 2 EBV LMP2A CLGGLLTMV Naive T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*02:01 B2M MHCI -7982 chip0423_579867 -1.5 7.83 Chip2 T1D_5 T1D TGTGTGGTGCACGTTGACAGACTCATGTTT CVVHVDRLMF TRAV12-1*01 TRAJ31*01 1.0 17.0 TGTGCCAGCCGCGCCGGGACCGGGCATGCAGCTTTCTTT CASRAGTGHAAFF TRBV9*01 TRBJ1-1*01 4.0 221.0 CVVHVDRLMF_CASRAGTGHAAFF 1 7764 G6PC2-LTS-10 IGRP 0.72 59 G6PC2-LTS-10 139 7625 3 HomoSapiens G6PC2 LTSLTILQLY Naive T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*01:01 B2M MHCI -7983 chip0423_596151 -1.95 11.0 Chip2 T1D_4 T1D TGTGCAATGAGCCTATCTAACTTTGGAAACGAGAAATTAACCTTT CAMSLSNFGNEKLTF TRAV12-3*01 TRAJ48*01 28.0 490.0 TGCGCCAGCAGCCATCTTCGCAGGAGCTTTTTACGGCTACACCTTC CASSHLRag??gaAFYGYTF TRBV4-1*01 TRBJ1-2*01 2.0 34.0 CAMSLSNFGNEKLTF_CASSHLRag??gaAFYGYTF 1 6006 PGT-178 PGT 0.64 1480 PGT-178 169 5837 3 HomoSapiens PGT LLAGIGTVPI Naive T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*02:01 B2M MHCI -7984 chip0423_450056 14.8 9.34 Chip2 T1D_5 T1D TGTGCAATGAGAGACCCCCGGACTGGGGCACACAACCTCTTCTTC CAMRDPRTGAHNLFF TRAV14/DV4*01 TRAJ36*01 9.0 128.0 TGTGCCAGCAGCTTAGTAGGGGACTCCGGGGAGCTGTTTTTT CASSLVGDSGELFF TRBV7-6*01 TRBJ2-2*01 47.0 2275.0 CAMRDPRTGAHNLFF_CASSLVGDSGELFF 1 4388 BZLF1-190-197 EBV 0.5 2156 NEG 140 4248 12 EBV BZLF1 RAKFKQLL effector T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-B*08:01 B2M MHCI -7985 chip0423_233808 -1.91 7.15 Chip2 T1D_6 T1D TGTGCGGCCGCCGCCACTGACCTGCGCTTT CAAAATDLRF TRAV27*01 TRAJ43*01 12.0 1136.0 CAAAATDLRF_ 1 7657 GAD2-VSA-10 GAD65 0.49 21 GAD2-VSA-10 142 7515 3 HomoSapiens GAD2 VSATAGTTVY Naive T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*01:01 B2M MHCI -7986 chip0423_860292 11.37 6.51 Chip2 T1D_4 T1D TGTGCCAGCAGAGGACAGCTGGGCGGCAATCAGCCCCAGCATTTT CASRGQLGGNQPQHF TRBV28*01 TRBJ1-5*01 19.0 996.0 _CASRGQLGGNQPQHF 2 7768 EBV-BRLF1 EBV 0.74 1264 EBV-BRLF1 203 7565 6 EBV BRLF1 YVLDHLIVV central memory T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*02:01 B2M MHCI -7987 chip0423_681403 -0.45 7.32 Chip2 T1D_6 T1D CGTGCAATGAGTGTGCCTGACTTTGGCCTCGGGCGTTTTACCTTT RAMSVPDFGLGRFTF TRAV12-3*01 TRAJ48*01 4.0 86.0 TGTGCCAGCAGCCACCCGGACAGCTACCTTGAAAAACTGTTTTTT CASSHPDSYLEKLFF TRBV7-2*01 TRBJ1-4*01 98.0 3626.0 RAMSVPDFGLGRFTF_CASSHPDSYLEKLFF 1 11325 PGT-178 PGT 0.71 1480 PGT-178 162 11163 3 HomoSapiens PGT LLAGIGTVPI Naive T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*02:01 B2M MHCI -7988 chip0423_581710 -1.59 10.33 Chip2 T1D_6 T1D TGTGCCGTGAATCAGGGTGGGGGTTACCAGAAAGTTACCTTT CAVNQGGGYQKVTF TRAV12-2*01 TRAJ13*01 70.0 3362.0 TGTGCCAGCAGTTACTCACCGAACACTGAAGCTTTCTTT CASSYSPNTEAFF TRBV6-5*01 TRBJ1-1*01 36.0 1264.0 CAVNQGGGYQKVTF_CASSYSPNTEAFF 1 6222 PGT-178 PGT 0.54 1480 PGT-178 164 6058 3 HomoSapiens PGT LLAGIGTVPI Naive T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*02:01 B2M MHCI -7989 chip0423_366029 -4.42 8.4 Chip2 T1D_6 T1D TGTGCAATGACCCTATCTAACTTTGGAAATGAGAAATTAACCTTT CAMTLSNFGNEKLTF TRAV12-3*01 TRAJ48*01 59.0 3435.0 TGTGCCATCAGTGAGTCAACAGGGGTTCGCTACAATGAGCAGTTCTTC CAISESTGVRYNEQFF TRBV10-3*01 TRBJ2-1*01 31.0 1297.0 CAMTLSNFGNEKLTF_CAISESTGVRYNEQFF 1 6020 PGT-178 PGT 0.82 1480 PGT-178 150 5870 2 HomoSapiens PGT LLAGIGTVPI Naive T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*02:01 B2M MHCI -7990 chip0423_210364 6.29 12.48 Chip2 T1D_4 T1D TGTGCTGTGAGTTGGGACACAGGCTTTCAGAAACTTGTATTT CAVSWDTGFQKLVF TRAV8-6*01 TRAJ8*01 45.0 2023.0 TGTGCCAGCAGCTTAGGGACTAGCGCTAGCACAGATACGCAGTATTTT CASSLGTSASTDTQYF TRBV7-9*01 TRBJ2-3*01 28.0 1200.0 CAVSWDTGFQKLVF_CASSLGTSASTDTQYF 1 4580 INS-LWM-8 INS 0.55 11 NEG 158 4422 7 HomoSapiens INS LWMRLLPL transitional T cells between effector and memory populations PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-B*08:01 B2M MHCI -7991 chip0423_437909 13.8 8.05 Chip2 T1D_6 T1D TGTGCCAGCAGCTTGGGACAGGCCTACGAGCAGTACTTC CASSLGQAYEQYF TRBV7-8*01 TRBJ2-7*01 15.0 660.0 _CASSLGQAYEQYF 175 3419 EBNA3A-193-201 EBV 0.88 1022 EBNA3A-193-201 186 3233 10 EBV EBNA3A FLRGRAYGL effector memory T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-B*08:01 B2M MHCI -7992 chip0423_125539 -1.04 8.89 Chip2 T1D_6 T1D TGTGCCGTGGCTGGAAGCTTCAAAACTATCTTT CAVAGSFKTIF TRAV12-2*01 TRAJ9*01 8.0 613.0 TGTGCCAGCAGCTTGGGGGACAGGGCTTACGAGCAGTACTTC CASSLGDRAYEQYF TRBV7-8*01 TRBJ2-7*01 19.0 1110.0 CAVAGSFKTIF_CASSLGDRAYEQYF 1 8113 MART1-A28L MART1 0.45 84 NEG 164 7949 4 HomoSapiens MART1 ALGIGILTV Naive T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*02:01 B2M MHCI -7993 chip0423_487527 10.92 10.72 Chip2 T1D_5 T1D TGTGCAGCTCAGGAAACCTCCTACGACAAGGTGATATTT CAAQETSYDKVIF TRAV13-1*01 TRAJ50*01 13.0 1105.0 TGTGCCAGCACCCAGGTAGACAGACCCAACTATGGCTACACCTTC CASTQVDRPNYGYTF TRBV7-9*01 TRBJ1-2*01 12.0 401.0 CAAQETSYDKVIF_CASTQVDRPNYGYTF 17 3266 BZLF1-190-197 EBV 0.45 2156 NEG 139 3127 9 EBV BZLF1 RAKFKQLL effector memory T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-B*08:01 B2M MHCI -7994 chip0423_215772 -3.61 8.46 Chip2 T1D_4 T1D TGTGTGGTCTCAATATCTAACTTTGGAAATGAGAAATTAACCTTT CVVSISNFGNEKLTF TRAV12-1*01 TRAJ48*01 46.0 1500.0 TGTGCTCTAAGTGGCTTAAGGTGCTACAAACAAGCTCATCTTT CALSGLR??tATNKLIF TRAV16*01 TRAJ32*01 46.0 2288.0 0.39 TGCAGTGCTAGAGACTTTCGGACAGGGGGCAGCGCTGAAGCTTTCTTT CSARDFRTGGSAEAFF TRBV20-1*01 TRBJ1-1*01 27.0 1448.0 CVVSISNFGNEKLTF_CSARDFRTGGSAEAFF 1 7198 PGT-178 PGT 0.72 1480 PGT-178 131 7067 2 HomoSapiens PGT LLAGIGTVPI Naive T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*02:01 B2M MHCI -7995 chip0423_540130 -2.19 8.52 Chip2 healthy_4 healthy TGTGCCGTGAACATTTGGGGAAGCCAAGGAAATCTCATCTTT CAVNIWGSQGNLIF TRAV12-2*01 TRAJ42*01 14.0 631.0 TGTGCTACGGGCGCGCCCTCCTGAGGCTCAACCCTGGGGAGGCTATACTTT CATGAPS*GSTLGRLYF TRAV17*01 TRAJ18*01 25.0 509.0 0.49 TGTGCCAGCAGCCCCCCTTTCAACAATGAGCAGTTCTTC CASSPPFNNEQFF TRBV28*01 TRBJ2-1*01 20.0 999.0 CAVNIWGSQGNLIF_CASSPPFNNEQFF 1 5761 MART1-ALA MART1 0.56 269 NEG 150 5611 2 HomoSapiens MART1 ALAGIGILTV Naive T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*02:01 B2M MHCI -7996 chip0423_495554 6.25 11.98 Chip2 T1D_6 T1D TGCGCCAGCAGTCCGAAGAAAGAGAAGAATGAGCAGTTCTTC CASSPKKEKNEQFF TRBV4-3*01 TRBJ2-1*01 22.0 1068.0 _CASSPKKEKNEQFF 1 5509 M1 FLU 0.45 1250 M1 150 5359 7 InfluenzaA M1 GILGFVFTL transitional T cells between effector and memory populations PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*02:01 B2M MHCI -7997 chip0423_420842 15.79 11.52 Chip2 T1D_5 T1D TGTGCCAGCAGCTATCTACAGGGGATGAATTCACCCCTCCACTTT CASSYLQGMNSPLHF TRBV7-2*01 TRBJ1-6*01 72.0 3112.0 _CASSYLQGMNSPLHF 4 2452 BZLF1-190-197 EBV 0.57 2156 NEG 147 2305 12 EBV BZLF1 RAKFKQLL effector T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-B*08:01 B2M MHCI -7998 chip0423_821860 12.72 7.42 Chip2 T1D_6 T1D TGCATCCTCCCACTTGCTGGTGGTACTAGCTATGGAAAGCTGACATTT CILPLAGGTSYGKLTF TRAV26-2*01 TRAJ52*01 42.0 1492.0 TGTGCCAGCAGCTTGGGACAGGCCTACGAGCAGTACTTC CASSLGQAYEQYF TRBV7-8*01 TRBJ2-7*01 28.0 2003.0 CILPLAGGTSYGKLTF_CASSLGQAYEQYF 308 3887 EBNA3A-193-201 EBV 0.8 1022 NEG 171 3716 10 EBV EBNA3A FLRGRAYGL effector memory T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-B*08:01 B2M MHCI -7999 chip0423_440717 -0.14 8.92 Chip2 T1D_6 T1D TGTGCCAGCAGCCTGGGACAGGCTAACACCGGGGAGCTGTTTTTT CASSLGQANTGELFF TRBV5-6*01 TRBJ2-2*01 2.0 56.0 _CASSLGQANTGELFF 1 5971 PTPRN-797-805 PTPRN 0.62 12 PTPRN-797-805 144 5827 4 HomoSapiens PTPRN MVWESGCTV Naive T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*02:01 B2M MHCI -8000 chip0423_42282 15.14 10.43 Chip2 healthy_4 healthy TGCAGTGCTAGAGATGAGACAGGGAATGGCTACACCTTC CSARDETGNGYTF TRBV20-1*01 TRBJ1-2*01 2.0 442.0 _CSARDETGNGYTF 6 2565 EBV-BLMF1 EBV 0.57 2531 NEG 157 2408 12 EBV BLMF1 GLCTLVAML effector T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*02:01 B2M MHCI -8001 chip0423_841327 14.6 9.48 Chip2 healthy_3 healthy TGTGCTGTTCTCCCCTCTAACGACTACAAGCTCAGCTTT CAVLPSNDYKLSF TRAV21*01 TRAJ20*01 59.0 4878.0 TGTGCCAGTATCGGAAAGACCACTAGCACAGATACGCAGTATTTT CASIGKTTSTDTQYF TRBV19*01 TRBJ2-3*01 39.0 1319.0 CAVLPSNDYKLSF_CASIGKTTSTDTQYF 3 8005 NP44-52 FLU 0.64 474 NP44-52 171 7834 12 InfluenzaA NP CTELKLSDY effector T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*01:01 B2M MHCI -8002 chip0423_70747 12.22 10.35 Chip2 T1D_4 T1D TGTGCTGTGAGTGATGGAGAAGGAGCCCAGAAGCTGGTATTT CAVSDGEGAQKLVF TRAV8-6*01 TRAJ54*01 40.0 2004.0 TGTGCCAGCAGCTTAACGGTTCTGGCAGGTCCAAACACTGAAGCTTTCTTT CASSLTVLAGPNTEAFF TRBV7-3*01 TRBJ1-1*01 22.0 580.0 CAVSDGEGAQKLVF_CASSLTVLAGPNTEAFF 44 4507 BZLF1-190-197 EBV 0.76 2156 BZLF1-190-197 158 4349 9 EBV BZLF1 RAKFKQLL effector memory T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-B*08:01 B2M MHCI -8003 chip0423_643479 11.33 12.21 Chip2 T1D_4 T1D TGCATCGTCAGAGTCGTGTGTACGGCACTGCCAGTTAACTCACCTTT CIVRVVCac?GTAS*LTF TRAV26-1*01 TRAJ44*01 37.0 1661.0 CIVRVVCac?GTAS*LTF_ 1 3815 BZLF1-190-197 EBV 0.82 2156 BZLF1-190-197 147 3668 9 EBV BZLF1 RAKFKQLL effector memory T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-B*08:01 B2M MHCI -8004 chip0423_425509 6.11 12.74 Chip2 healthy_3 healthy TGCGCCAGCAGCCAAGATGGGTACGGGGGGGATCAGCCCCAGCATTTT CASSQDGYGGDQPQHF TRBV4-1*01 TRBJ1-5*01 15.0 422.0 _CASSQDGYGGDQPQHF 4 7198 NP44-52 FLU 0.88 474 NP44-52 147 7051 7 InfluenzaA NP CTELKLSDY transitional T cells between effector and memory populations PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*01:01 B2M MHCI -8005 chip0423_380181 14.73 10.87 Chip2 T1D_5 T1D TGTGCAGCAAGTGAAACCTCCTACGACAAGGTGATATTT CAASETSYDKVIF TRAV13-1*01 TRAJ50*01 15.0 1181.0 TGTGCCAGCAGCTCCTTGAGACAGGGGACTGGAAACACCATATATTTT CASSSLRQGTGNTIYF TRBV7-9*01 TRBJ1-3*01 5.0 133.0 CAASETSYDKVIF_CASSSLRQGTGNTIYF 1 3995 BZLF1-190-197 EBV 0.57 2156 NEG 168 3827 12 EBV BZLF1 RAKFKQLL effector T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-B*08:01 B2M MHCI -8006 chip0423_828195 10.75 8.76 Chip2 T1D_5 T1D TGTGCCAGCAGTTTTACAGGTAGCTCTGGAAACACCATATATTTT CASSFTGSSGNTIYF TRBV12-3*01,TRBV12-4*01 TRBJ1-3*01 26.0 897.0 _CASSFTGSSGNTIYF 7 4063 BZLF1-190-197 EBV 0.64 2156 BZLF1-190-197 146 3917 10 EBV BZLF1 RAKFKQLL effector memory T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-B*08:01 B2M MHCI -8007 chip0423_613859 11.42 10.22 Chip2 healthy_4 healthy TGTGCCAGCAGCTCCGGACAGGCCTACGAGCAGTACTTC CASSSGQAYEQYF TRBV7-8*01 TRBJ2-7*01 16.0 962.0 _CASSSGQAYEQYF 49 3716 EBNA3A-193-201 EBV 0.88 1022 NEG 147 3569 9 EBV EBNA3A FLRGRAYGL effector memory T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-B*08:01 B2M MHCI -8008 chip0423_335660 -3.44 12.81 Chip2 T1D_4 T1D TGCATCGTCAGAGTCGAATTTGGAAATGAGAAATTAACCTTT CIVRVEFGNEKLTF TRAV26-1*01 TRAJ48*01 59.0 2465.0 TGTGCCAGCAGCCCCCAAGCGGGGGATGAGCAGTTCTTC CASSPQAGDEQFF TRBV7-9*01 TRBJ2-1*01 30.0 2633.0 CIVRVEFGNEKLTF_CASSPQAGDEQFF 1 3994 PGT-178 PGT 0.92 1480 NEG 136 3858 1 HomoSapiens PGT LLAGIGTVPI Naive T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*02:01 B2M MHCI -8009 chip0423_801325 -0.01 8.08 Chip2 T1D_6 T1D TGTGCAGGGCCCGAATATGGAAACAAACTGGTCTCT CAGPEYGNKLVS TRAV25*01 TRAJ47*01 1.0 10.0 TGTGCCAGCAGCTCAAGGGGCGTAGATCGGGACGATGGCTACACCTTC CASSSRGVDRDDGYTF TRBV12-3*01,TRBV12-4*01 TRBJ1-2*01 2.0 60.0 CAGPEYGNKLVS_CASSSRGVDRDDGYTF 1 9919 ZNT8-YAY-8 ZNT8 0.69 54 ZNT8-YAY-8 162 9757 4 HomoSapiens ZNT8 YAYAKWKL Naive T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-B*08:01 B2M MHCI -8010 chip0423_682110 10.44 7.89 Chip2 T1D_6 T1D TGTGCCGTGAACATCGCGCATTCTGGAGGAGGTGCTGACGGACTCACCTTT CAVNIAHSGGGADGLTF TRAV12-2*01 TRAJ45*01 39.0 943.0 TGTGCCAGCAGCTTGGGACAGGCCTACGAGCAGTACTTC CASSLGQAYEQYF TRBV7-8*01 TRBJ2-7*01 19.0 1145.0 CAVNIAHSGGGADGLTF_CASSLGQAYEQYF 1 3980 EBNA3A-193-201 EBV 0.93 1022 EBNA3A-193-201 156 3824 10 EBV EBNA3A FLRGRAYGL effector memory T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-B*08:01 B2M MHCI -8011 chip0423_485776 10.05 9.49 Chip2 healthy_3 healthy TGCAGCGTTGGGACAGGGGGCACAAATGAAAAACTGTTTTTT CSVGTGGTNEKLFF TRBV29-1*01 TRBJ1-4*01 105.0 3490.0 _CSVGTGGTNEKLFF 638 4079 EBV-BLMF1 EBV 0.47 2531 NEG 174 3905 8 EBV BLMF1 GLCTLVAML effector memory T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*02:01 B2M MHCI -8012 chip0423_75489 9.85 9.99 Chip2 healthy_3 healthy TGTGCCGTGAAGGAGGGAGGAAAGCTTATCTTC CAVKEGGKLIF TRAV8-1*01 TRAJ23*01 23.0 2120.0 TGTGCTGTGCAAATGAGACTCAGGAACCTACAAATACATCTTT CAVQMRL??aGTYKYIF TRAV20*01 TRAJ40*01 31.0 1467.0 0.46 TGTGCCAGCAGCCAGATGTCAGATACGCAGTATTTT CASSQMSDTQYF TRBV6-2*01,TRBV6-3*01 TRBJ2-3*01 19.0 1191.0 CAVKEGGKLIF_CASSQMSDTQYF 3 4606 EBV-BRLF1 EBV 0.76 1264 NEG 143 4463 9 EBV BRLF1 YVLDHLIVV effector memory T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*02:01 B2M MHCI -8013 chip0423_860329 14.89 12.75 Chip2 T1D_4 T1D TGCATCGTCAGAGAGGGAGGGGGTGCTGCCGGACTCCCCTTT CIVREGGGAAGLPF TRAV26-1*01 TRAJ45*01 12.0 779.0 TGTGCCAGCAGCTTAGCGGTCGGAGAAGGGCCCCAGCATTTT CASSLAVGEGPQHF TRBV7-9*01 TRBJ1-5*01 38.0 1582.0 CIVREGGGAAGLPF_CASSLAVGEGPQHF 4 2413 BZLF1-190-197 EBV 0.74 2156 BZLF1-190-197 173 2240 12 EBV BZLF1 RAKFKQLL effector T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-B*08:01 B2M MHCI -8014 chip0423_39466 13.73 8.7 Chip2 T1D_5 T1D TGTGCAGCAAGTGAAACCTCCTACGACAAGGTGATATTT CAASETSYDKVIF TRAV13-1*01 TRAJ50*01 39.0 1998.0 TGTGCCAGCAGCAACCAGAATTTACGGACAGGGTCCCACTATGGCTACACCTTC CASSNQNLRTGSHYGYTF TRBV7-8*01 TRBJ1-2*01 21.0 533.0 CAASETSYDKVIF_CASSNQNLRTGSHYGYTF 1 3817 BZLF1-190-197 EBV 0.83 2156 NEG 185 3632 10 EBV BZLF1 RAKFKQLL effector memory T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-B*08:01 B2M MHCI -8015 chip0423_345463 14.75 10.88 Chip2 T1D_5 T1D TGTGCAGCAAAGGAAACCTCCTACGACAAGGTGATATTT CAAKETSYDKVIF TRAV13-1*01 TRAJ50*01 26.0 2032.0 TGTGCCAGCAGCTTACTAGGGGGCACCGACACCGGGGAGCTGTTTTTT CASSLLGGTDTGELFF TRBV7-9*01 TRBJ2-2*01 107.0 4669.0 CAAKETSYDKVIF_CASSLLGGTDTGELFF 6 3235 BZLF1-190-197 EBV 0.42 2156 NEG 143 3092 12 EBV BZLF1 RAKFKQLL effector T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-B*08:01 B2M MHCI -8016 chip0423_324482 9.73 9.95 Chip2 healthy_3 healthy TGTGCCACCCCGTGCGGAGGAGGAAAAACTGTTTTTT CATPCG??gEEKLFF TRBV19*01 TRBJ1-4*01 11.0 399.0 _CATPCG??gEEKLFF 1 5249 EBV-BRLF1 EBV 0.53 1264 EBV-BRLF1 142 5107 9 EBV BRLF1 YVLDHLIVV effector memory T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*02:01 B2M MHCI -8017 chip0423_725846 10.73 10.01 Chip2 T1D_5 T1D TGTGCCAGCAGTCCCCCGGGGAGAAATGAAAAACTGTTTTTT CASSPPGRNEKLFF TRBV12-3*01,TRBV12-4*01 TRBJ1-4*01 43.0 1416.0 _CASSPPGRNEKLFF 11 3561 BZLF1-190-197 EBV 0.74 2156 BZLF1-190-197 144 3417 9 EBV BZLF1 RAKFKQLL effector memory T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-B*08:01 B2M MHCI -8018 chip0423_355199 9.08 7.99 Chip2 T1D_4 T1D TGTGCCAGCAGCCAAGTCAACAACCCGGGGGATGGCTACACCTTC CASSQVNNPGDGYTF TRBV14*01 TRBJ1-2*01 8.0 285.0 _CASSQVNNPGDGYTF 94 6363 EBNA3A-158-166 EBV 0.53 444 NEG 156 6207 8 EBV EBNA3A QAKWRLQTL effector memory T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-B*08:01 B2M MHCI -8019 chip0423_81411 -2.63 8.09 Chip2 T1D_5 T1D TGTGTGGGGCTTAACGACTACAAGCTCAGCTTT CVGLNDYKLSF TRAV12-1*01 TRAJ20*01 29.0 3122.0 TGTGCCAGCAGTTTATTGGGTAGCTCCTACGAGCAGTACTTC CASSLLGSSYEQYF TRBV28*01 TRBJ2-7*01 32.0 1793.0 CVGLNDYKLSF_CASSLLGSSYEQYF 1 5922 G6PC2-LTS-10 IGRP 0.9 59 G6PC2-LTS-10 164 5758 2 HomoSapiens G6PC2 LTSLTILQLY Naive T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*01:01 B2M MHCI -8020 chip0423_745576 -1.48 9.1 Chip2 healthy_4 healthy TGTGCAATGACCCTCTCTAACTTTGGAAATGAGAAATTAACCTTT CAMTLSNFGNEKLTF TRAV12-3*01 TRAJ48*01 48.0 2346.0 TGTGCCAGCAGTTACTCGAGCGGGGTTATGGACACTGAAGCTTTCTTT CASSYSSGVMDTEAFF TRBV6-2*01,TRBV6-3*01 TRBJ1-1*01 3.0 107.0 CAMTLSNFGNEKLTF_CASSYSSGVMDTEAFF 1 5788 PGT-178 PGT 0.69 1480 NEG 138 5650 3 HomoSapiens PGT LLAGIGTVPI Naive T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*02:01 B2M MHCI -8021 chip0423_198657 10.68 7.17 Chip2 T1D_5 T1D TGTGCCAGCAGCTTATTGGGCCAGTACACCGGGGAGCTGTTTTTT CASSLLGQYTGELFF TRBV7-2*01 TRBJ2-2*01 22.0 969.0 _CASSLLGQYTGELFF 3 5619 BZLF1-190-197 EBV 1.0 2156 NEG 163 5456 10 EBV BZLF1 RAKFKQLL effector memory T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-B*08:01 B2M MHCI -8022 chip0423_93559 -1.23 8.85 Chip2 healthy_3 healthy TGCAGCGGCCTCTCTGGAAACACCATATATTTT CSGLSGNTIYF TRBV29-1*01 TRBJ1-3*01 105.0 7525.0 _CSGLSGNTIYF 1 6757 PGT-178 PGT 0.43 1480 PGT-178 172 6585 3 HomoSapiens PGT LLAGIGTVPI Naive T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*02:01 B2M MHCI -8023 chip0423_772730 14.17 10.56 Chip2 T1D_5 T1D TGTGCCAGCAGCTTAGTGAGGGGGAACGAGCAGTACTTC CASSLVRGNEQYF TRBV7-8*01 TRBJ2-7*01 8.0 714.0 _CASSLVRGNEQYF 1 3033 BZLF1-190-197 EBV 0.45 2156 NEG 158 2875 12 EBV BZLF1 RAKFKQLL effector T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-B*08:01 B2M MHCI -8024 chip0423_538567 12.19 10.88 Chip2 T1D_4 T1D TCTTCTGTTACTGCTGGGGAAGGCGCCCCCAAGCTGGTCTTT SSVTAGEGAPKLVF TRAV8-4*01,TRAV8-6*01 TRAJ54*01 2.0 78.0 SSVTAGEGAPKLVF_ 1 2635 BZLF1-190-197 EBV 0.83 2156 NEG 136 2499 9 EBV BZLF1 RAKFKQLL effector memory T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-B*08:01 B2M MHCI -8025 chip0423_384872 6.1 13.8 Chip2 T1D_6 T1D TGTGCCAGTAGTATATATAGCATCAATGAGCAGTTCTTC CASSIYSINEQFF TRBV19*01 TRBJ2-1*01 1.0 28.0 _CASSIYSINEQFF 2 7092 M1 FLU 0.42 1250 NEG 156 6936 7 InfluenzaA M1 GILGFVFTL transitional T cells between effector and memory populations PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*02:01 B2M MHCI -8026 chip0423_343352 10.35 10.81 Chip2 T1D_4 T1D TGTGCCGTGCCCTTCAACCGGCACTGCCAGTAAACTCACCTTC CAVPFNR??cTASKLTF TRAV8-1*01 TRAJ44*01 28.0 2085.0 TGCGCCAGCAGCTTGGAGGGACAGGCCAGCTCCTACGAGCAGTACTTC CASSLEGQASSYEQYF TRBV5-1*01 TRBJ2-7*01 13.0 688.0 CAVPFNR??cTASKLTF_CASSLEGQASSYEQYF 1 5242 EBV-LMP2A EBV 1.0 700 NEG 159 5083 9 EBV LMP2A CLGGLLTMV effector memory T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*02:01 B2M MHCI -8027 chip0423_314084 8.98 11.36 Chip2 T1D_5 T1D TGTGCCAGCAGTTTTCCTAGTCTTCATACGCAGTATTTT CASSFPSLHTQYF TRBV12-3*01,TRBV12-4*01 TRBJ2-3*01 13.0 797.0 _CASSFPSLHTQYF 1 6113 BZLF1-190-197 EBV 0.83 2156 NEG 170 5943 9 EBV BZLF1 RAKFKQLL effector memory T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-B*08:01 B2M MHCI -8028 chip0423_167219 -3.43 9.24 Chip2 T1D_6 T1D TGCAGTGCTAGAGGTGGGGTGAGAGAGACCCAGTACTTC CSARGGVRETQYF TRBV20-1*01 TRBJ2-5*01 25.0 1671.0 _CSARGGVRETQYF 1 6923 Nef13-20 HIV 0.63 19 Nef13-20 142 6781 2 HIV-1 Nef WPTVRERM Naive T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-B*08:01 B2M MHCI -8029 chip0423_161774 -3.46 10.04 Chip2 healthy_3 healthy TGTGCCGTCCCAACTGACCGCTGGGGGAAATTGCAGTTT CAVPTDRWGKLQF TRAV12-2*01 TRAJ24*01 19.0 1903.0 TGTGCCAGCAGTGACGGACTTCTTTGGCCAGATACGCAGTATTTT CASSDGLLWPDTQYF TRBV14*01 TRBJ2-3*01 21.0 588.0 CAVPTDRWGKLQF_CASSDGLLWPDTQYF 1 5997 EBV-LMP1-2 EBV 0.66 41 EBV-LMP1-2 134 5863 2 EBV LMP1 YLQQNWWTL Naive T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*02:01 B2M MHCI -8030 chip0423_571304 -4.71 9.63 Chip2 T1D_6 T1D TGTGCCGTGAGTAGTTCCGGGTATGCACTCAACTTC CAVSSSGYALNF TRAV12-2*01 TRAJ41*01 12.0 1063.0 TGTGCCAGCAGCTCCGGCAGCTACGAGCAGTACTTC CASSSGSYEQYF TRBV7-2*01 TRBJ2-7*01 3.0 91.0 CAVSSSGYALNF_CASSSGSYEQYF 1 6366 ZNT8-141-149 ZNT8 0.5 5 NEG 136 6230 2 HomoSapiens ZNT8 ILGALLSIL Naive T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*02:01 B2M MHCI -8031 chip0423_558884 10.92 7.37 Chip2 T1D_5 T1D TGTGCCAGCAGTCCCCCGGGGAGAAATGAAAAACTGTTTTTT CASSPPGRNEKLFF TRAV9-2*01 TRAJ5*01 7.0 28.0 TGTGCCAGCAGTCCCCCGGGGAGAAATGAAAAACTGTTTTTT CASSPPGRNEKLFF TRBV12-3*01,TRBV12-4*01 TRBJ1-4*01 205.0 8804.0 CASSPPGRNEKLFF_CASSPPGRNEKLFF 11 6199 BZLF1-190-197 EBV 0.59 2156 BZLF1-190-197 176 6023 10 EBV BZLF1 RAKFKQLL effector memory T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-B*08:01 B2M MHCI -8032 chip0423_545513 6.52 10.95 Chip2 T1D_5 T1D TGTGCCAGCAGCTTATTAGGCCAGGACGAGGATAATTCACCCCTCCACTTT CASSLLGQDEDNSPLHF TRBV11-1*01 TRBJ1-6*01 10.0 176.0 _CASSLLGQDEDNSPLHF 1 5294 BZLF1-190-197 EBV 0.88 2156 NEG 172 5122 7 EBV BZLF1 RAKFKQLL transitional T cells between effector and memory populations PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-B*08:01 B2M MHCI -8033 chip0423_477116 5.96 13.84 Chip2 healthy_3 healthy TGTCCACCAAGCGAGAAATTCTGCAGGACGCCAAGGCCCTCTCCTCTTT CPPSEKFC??aGRQGPLLF TRAV29/DV5*01 TRAJ42*01 41.0 1763.0 CPPSEKFC??aGRQGPLLF_ 1 5884 M1 FLU 0.46 1250 NEG 145 5739 7 InfluenzaA M1 GILGFVFTL transitional T cells between effector and memory populations PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*02:01 B2M MHCI -8034 chip0423_728269 7.42 11.65 Chip2 T1D_5 T1D TGCCTCGTGGGGGATCCTAGGCGCTGCCACGATCCTCTTT CLVGDPag??gcAATILF TRAV4*01 TRAJ30*01 22.0 1228.0 CLVGDPag??gcAATILF_ 1 4028 G6PC2-YLK-8 IGRP 0.85 27 NEG 156 3872 7 HomoSapiens G6PC2 YLKTNLFL transitional T cells between effector and memory populations PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-B*08:01 B2M MHCI -8035 chip0423_836698 -2.91 12.97 Chip2 healthy_3 healthy _ 6746 4313 EBV-LMP2A EBV 0.67 700 NEG 144 4169 1 EBV LMP2A CLGGLLTMV Naive T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*02:01 B2M MHCI -8036 chip0423_318677 7.58 12.62 Chip2 T1D_6 T1D TGTGCCTCCCAAGGAGGAAGCCAAGGAAATCTCATCTTT CASQGGSQGNLIF TRAV20*01 TRAJ42*01 19.0 1337.0 TGTGCCCGCTGCTTCGGCGGCCAGACAGAGACCCAGTACTCC CARCFGGQTETQYS TRBV13*01 TRBJ2-5*01 2.0 290.0 CASQGGSQGNLIF_CARCFGGQTETQYS 1 3744 ROTA-VP6 ROTA 0.64 47 NEG 180 3564 7 RotavirusA VP6 TLLANVTAV transitional T cells between effector and memory populations PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*02:01 B2M MHCI -8037 chip0423_880393 10.36 10.58 Chip2 T1D_5 T1D _ 6746 4292 BZLF1-190-197 EBV 0.83 2156 BZLF1-190-197 149 4143 9 EBV BZLF1 RAKFKQLL effector memory T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-B*08:01 B2M MHCI -8038 chip0423_758865 7.24 8.97 Chip2 T1D_5 T1D _ 6746 7597 BZLF1-190-197 EBV 0.43 2156 NEG 143 7454 3 EBV BZLF1 RAKFKQLL Naive T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-B*08:01 B2M MHCI -8039 chip0423_323700 -4.04 10.37 Chip2 T1D_6 T1D TGTGCCAGCAGCTGGGACATCAACACCGGGGAGCTGTTTTTT CASSWDINTGELFF TRBV6-1*01 TRBJ2-2*01 5.0 62.0 _CASSWDINTGELFF 1 6466 IAPP-STN-9 IAPP 0.51 48 IAPP-STN-9 153 6313 2 HomoSapiens IAPP STNVGSNTY Naive T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*01:01 B2M MHCI -8040 chip0423_238265 7.85 11.49 Chip2 T1D_6 T1D TGTGCTGGAGGTGGCTCTAGCAACACAGGCAAACTAATCTTT CAGGGSSNTGKLIF TRAV27*01 TRAJ37*01 46.0 2014.0 TGTGCCAGTAGTATACGGAGCTCCTACGAGCAGTACTTC CASSIRSSYEQYF TRBV19*01 TRBJ2-7*01 54.0 3289.0 CAGGGSSNTGKLIF_CASSIRSSYEQYF 1 6504 M1 FLU 0.53 1250 M1 179 6325 7 InfluenzaA M1 GILGFVFTL transitional T cells between effector and memory populations PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*02:01 B2M MHCI -8041 chip0423_545947 -3.79 13.04 Chip2 T1D_6 T1D _ 6746 4731 ZNT8-CPR-9 ZNT8 0.42 2 NEG 135 4596 1 HomoSapiens ZNT8 CPRERPEEL Naive T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-B*08:01 B2M MHCI -8042 chip0423_495354 10.29 6.91 Chip2 T1D_5 T1D TGCATCCTCCCACTCTGGGGCTGGGAGTTACCAACTCACTTTC CILPLWG??tGSYQLTF TRAV26-2*01 TRAJ28*01 1.0 62.0 TGTGCCAGCAGCGTTCCGGGACAGGGCGTGGACCCCTCCACTTT CASSVPGc?aGRGPLHF TRBV9*01 TRBJ1-6*01 7.0 334.0 CILPLWG??tGSYQLTF_CASSVPGc?aGRGPLHF 1 6459 BZLF1-190-197 EBV 0.64 2156 NEG 166 6293 10 EBV BZLF1 RAKFKQLL effector memory T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-B*08:01 B2M MHCI -8043 chip0423_602335 -2.17 12.1 Chip2 T1D_4 T1D TGTGCAATGAGCATATCTAACTTTGGAAATGAGAAATTAACCTTT CAMSISNFGNEKLTF TRAV12-3*01 TRAJ48*01 8.0 226.0 TGTGCCAGCAGTTTAAAGGCCTACAGGGAGATGAGAAGCTCTGGGGCCAACGTCCTGACTTTC CASSLKAYREMRSSGANVLTF TRBV28*01 TRBJ2-6*01 3.0 64.0 CAMSISNFGNEKLTF_CASSLKAYREMRSSGANVLTF 1 4292 PGT-178 PGT 0.65 1480 PGT-178 157 4135 1 HomoSapiens PGT LLAGIGTVPI Naive T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*02:01 B2M MHCI -8044 chip0423_587524 13.52 10.56 Chip2 T1D_5 T1D TGTGCAGCAACGGAAACCTCCTACGACAAGGTGATATTT CAATETSYDKVIF TRAV13-1*01 TRAJ50*01 1.0 14.0 TGTGCCAGCAGTCCCCCGGGGAGAAATGAAAAACTGTTTTTT CASSPPGRNEKLFF TRBV12-3*01,TRBV12-4*01 TRBJ1-4*01 30.0 1477.0 CAATETSYDKVIF_CASSPPGRNEKLFF 34 3716 BZLF1-190-197 EBV 0.6 2156 BZLF1-190-197 163 3553 9 EBV BZLF1 RAKFKQLL effector memory T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-B*08:01 B2M MHCI -8045 chip0423_582379 -0.62 9.75 Chip2 T1D_6 T1D TGTGCCGTTTCAGGAGGAGGTGCTGACGGTCTCACCTTT CAVSGGGADGLTF TRAV12-2*01 TRAJ45*01 4.0 246.0 TGCGCCAGCAGCCAAGTAAGCGACACTGAAGCTTTCTCT CASSQVSDTEAFS TRBV4-3*01 TRBJ1-1*01 44.0 2156.0 CAVSGGGADGLTF_CASSQVSDTEAFS 1 8163 MART1-A28L MART1 0.54 84 MART1-A28L 152 8011 3 HomoSapiens MART1 ALGIGILTV Naive T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*02:01 B2M MHCI -8046 chip0423_57233 6.68 12.62 Chip2 T1D_5 T1D TGTGCTCTAGGGGCGCAAACCTCCTACGACAAGGTGATATTT CALGAQTSYDKVIF TRAV16*01 TRAJ50*01 27.0 2013.0 TGTGCCAGCAGAATGAATACAGGCGAAGCTTTCTTT CASRMNTGEAFF TRBV2*01 TRBJ1-1*01 43.0 2352.0 CALGAQTSYDKVIF_CASRMNTGEAFF 1 3531 NP44-52 FLU 0.75 474 NP44-52 154 3377 7 InfluenzaA NP CTELKLSDY transitional T cells between effector and memory populations PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*01:01 B2M MHCI -8047 chip0423_587405 -2.19 7.18 Chip2 T1D_6 T1D TGTGCCAGCAGCCTTTTGGGGGTCGAGCAGTTCTTC CASSLLGVEQFF TRBV7-9*01 TRBJ2-1*01 9.0 756.0 _CASSLLGVEQFF 1 6730 GAD2-VSA-10 GAD65 0.52 21 GAD2-VSA-10 160 6570 3 HomoSapiens GAD2 VSATAGTTVY Naive T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*01:01 B2M MHCI -8048 chip0423_23667 11.07 12.06 Chip2 T1D_5 T1D TGTGCAGCGGCGGAAACCTCCTACGACAAGGTGATATTT CAAAETSYDKVIF TRAV13-1*01 TRAJ50*01 25.0 2052.0 TGTGCCAGCCAACTAGCGGGAGGCACCGGGGAGCTGTTTTTT CASQLAGGTGELFF TRBV24-1*01 TRBJ2-2*01 28.0 1543.0 CAAAETSYDKVIF_CASQLAGGTGELFF 131 2611 BZLF1-190-197 EBV 0.45 2156 NEG 142 2469 9 EBV BZLF1 RAKFKQLL effector memory T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-B*08:01 B2M MHCI -8049 chip0423_813193 5.31 10.94 Chip2 T1D_4 T1D TGCAGTGCCTCTCGTGACTCCTACGAGCAGTACTTC CSASRDSYEQYF TRBV20-1*01 TRBJ2-7*01 13.0 1111.0 _CSASRDSYEQYF 7 6997 EBV-LMP1-1 EBV 0.91 237 NEG 162 6835 6 EBV LMP1 YLLEMLWRL central memory T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*02:01 B2M MHCI -8050 chip0423_765294 14.02 12.7 Chip2 T1D_4 T1D TGTGCCAGCAGCCAAGTCAACAACCCGGGGGATGGCTACACCTTC CASSQVNNPGDGYTF TRBV14*01 TRBJ1-2*01 7.0 150.0 _CASSQVNNPGDGYTF 94 2989 EBNA3A-158-166 EBV 0.75 444 NEG 173 2816 12 EBV EBNA3A QAKWRLQTL effector T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-B*08:01 B2M MHCI -8051 chip0423_333227 0.61 8.59 Chip2 healthy_3 healthy TGTGCCAGCAGTTCTACCGGGACACCTAACACCGGGGAGCTGTTTTTT CASSSTGTPNTGELFF TRBV6-5*01 TRBJ2-2*01 67.0 1835.0 _CASSSTGTPNTGELFF 1 9472 ZNT8-173-181 ZNT8 0.44 27 NEG 156 9316 4 HomoSapiens ZNT8 IQATVMIIV Naive T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*02:01 B2M MHCI -8052 chip0423_278649 6.08 9.57 Chip2 healthy_3 healthy TGTGCCGTGAATAGGGGTGCAGGCAAATCAACCTTT CAVNRGAGKSTF TRAV12-2*01 TRAJ27*01 31.0 2026.0 TGTGCCTGGAGTGGTCAGCCTGACCTGAAAAACTGTTTTTT CAWSGQcc?*PEKLFF TRBV30*01 TRBJ1-4*01 15.0 720.0 CAVNRGAGKSTF_CAWSGQcc?*PEKLFF 1 6571 MART1-ALA MART1 0.43 269 NEG 165 6406 6 HomoSapiens MART1 ALAGIGILTV central memory T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*02:01 B2M MHCI -8053 chip0423_884007 11.1 6.91 Chip2 T1D_6 T1D TGTGCCAGCAGCTTGGGACAGGCCTACGAGCAGTACTTC CASSLGQAYEQYF TRBV7-8*01 TRBJ2-7*01 2.0 33.0 _CASSLGQAYEQYF 175 6705 EBNA3A-193-201 EBV 0.74 1022 EBNA3A-193-201 176 6529 10 EBV EBNA3A FLRGRAYGL effector memory T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-B*08:01 B2M MHCI -8054 chip0423_813233 6.1 13.92 Chip2 healthy_3 healthy TGTGTGGTGAACGGGGAAAATGCCAGACTCATGTTT CVVNGENARLMF TRAV12-1*01 TRAJ31*01 17.0 1999.0 TGTGCCAGCGGTGCAATGTGGGGAGCACCCCTCCACTTT CASGAMWGAPLHF TRBV2*01 TRBJ1-6*01 11.0 469.0 CVVNGENARLMF_CASGAMWGAPLHF 1 5538 NP44-52 FLU 0.77 474 NP44-52 149 5389 7 InfluenzaA NP CTELKLSDY transitional T cells between effector and memory populations PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*01:01 B2M MHCI -8055 chip0423_541667 12.73 8.45 Chip2 T1D_4 T1D TGTGCCAGCAGCTTAGTGGTTAGCCACGGGGAGCTGTTTTTT CASSLVVSHGELFF TRBV7-2*01 TRBJ2-2*01 39.0 1819.0 _CASSLVVSHGELFF 4 2965 BZLF1-190-197 EBV 0.5 2156 NEG 165 2800 10 EBV BZLF1 RAKFKQLL effector memory T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-B*08:01 B2M MHCI -8056 chip0423_146257 5.32 12.32 Chip2 T1D_6 T1D TGTGCCAGCAGCTTAGCGGGTCGTGAGGGTACGCAGTATTTT CASSLAGREGTQYF TRBV11-2*01 TRBJ2-3*01 6.0 152.0 _CASSLAGREGTQYF 13 5689 NP380-388 FLU 0.79 60 NP380-388 176 5513 6 InfluenzaA NP ELRSRYWAI central memory T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-B*08:01 B2M MHCI -8057 chip0423_613775 7.77 8.0 Chip2 T1D_6 T1D _ 6746 10649 EBNA3A-158-166 EBV 0.71 444 EBNA3A-158-166 201 10448 8 EBV EBNA3A QAKWRLQTL effector memory T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-B*08:01 B2M MHCI -8058 chip0423_470721 -1.21 9.28 Chip2 T1D_5 T1D TGTGCAATGAGAGAGCCCAGTTCCGAGATGGCCAGAAGCTGCTCTTT CAMREPStc?RDGQKLLF TRAV14/DV4*01 TRAJ16*01 1.0 29.0 TGTGCCAGCAGGGGAGGCCAGGAACGGGGTCAGCCCCAGCATTTT CASRGGQERGQPQHF TRBV2*01 TRBJ1-5*01 12.0 595.0 CAMREPStc?RDGQKLLF_CASRGGQERGQPQHF 1 6496 Gag260-267 HIV 0.56 10 NEG 171 6325 3 HIV-1 Gag EIYKRWII Naive T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-B*08:01 B2M MHCI -8059 chip0423_441464 11.37 7.83 Chip2 T1D_4 T1D TGTGCTGTGAGAGACACGACGTGGGATGACAAGATCATCTTT CAVRDTTWDDKIIF TRAV3*01 TRAJ30*01 28.0 1101.0 CAVRDTTWDDKIIF_ 4 5035 EBNA3A-193-201 EBV 0.54 1022 NEG 190 4845 10 EBV EBNA3A FLRGRAYGL effector memory T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-B*08:01 B2M MHCI -8060 chip0423_273450 10.1 9.22 Chip2 healthy_4 healthy TGCATCCTTCCCCTAGCTGGTGGTACTAGCTATGGAAAGCTGACATTT CILPLAGGTSYGKLTF TRAV26-2*01 TRAJ52*01 39.0 1960.0 TGTGCCAGCAGCTCCGGACAGGCCTACGAGCAGTACTTC CASSSGQAYEQYF TRBV7-8*01 TRBJ2-7*01 29.0 1128.0 CILPLAGGTSYGKLTF_CASSSGQAYEQYF 40 3049 EBNA3A-193-201 EBV 0.77 1022 NEG 178 2871 8 EBV EBNA3A FLRGRAYGL effector memory T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-B*08:01 B2M MHCI -8061 chip0423_822304 8.52 11.67 Chip2 T1D_6 T1D _ 6746 5071 EBV-LMP2-FLY EBV 0.84 355 EBV-LMP2-FLY 149 4922 7 EBV LMP2 FLYALALLL transitional T cells between effector and memory populations PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*02:01 B2M MHCI -8062 chip0423_707792 6.95 12.53 Chip2 T1D_5 T1D _ 6746 5988 ZNT8-YAK-9 ZNT8 0.72 59 ZNT8-YAK-9 141 5847 7 HomoSapiens ZNT8 YAKWKLCSA transitional T cells between effector and memory populations PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-B*08:01 B2M MHCI -8063 chip0423_108816 9.86 10.01 Chip2 T1D_4 T1D TGTGCCAGCAGCTTAGCGGTCGGAGAAGGGCCCCAGCATTTT CASSLAVGEGPQHF TRBV7-9*01 TRBJ1-5*01 40.0 1765.0 _CASSLAVGEGPQHF 113 4993 BZLF1-190-197 EBV 0.87 2156 BZLF1-190-197 144 4849 9 EBV BZLF1 RAKFKQLL effector memory T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-B*08:01 B2M MHCI -8064 chip0423_878040 9.64 8.85 Chip2 T1D_5 T1D TGTGCCAGCAGCTTATTAGGGGAGCAGAATTCACCCCTCCACTTT CASSLLGEQNSPLHF TRBV7-9*01 TRBJ1-6*01 35.0 1293.0 _CASSLLGEQNSPLHF 4 7568 BZLF1-190-197 EBV 0.75 2156 BZLF1-190-197 175 7393 8 EBV BZLF1 RAKFKQLL effector memory T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-B*08:01 B2M MHCI -8065 chip0423_170366 11.87 10.8 Chip2 T1D_4 T1D TGTGCCAGCAGCTTAGCGGTCGGAGAAGGGCCCCAGCATTTT CASSLAVGEGPQHF TRBV7-9*01 TRBJ1-5*01 70.0 2873.0 _CASSLAVGEGPQHF 113 5188 BZLF1-190-197 EBV 0.93 2156 BZLF1-190-197 163 5025 9 EBV BZLF1 RAKFKQLL effector memory T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-B*08:01 B2M MHCI -8066 chip0423_450575 -2.4 10.47 Chip2 T1D_5 T1D TGCGCCAGCAGCTTGGTTGGGGACACAGATACGCAGTATTTT CASSLVGDTDTQYF TRBV5-1*01 TRBJ2-3*01 36.0 1114.0 _CASSLVGDTDTQYF 1 5455 G6PC2-LTS-10 IGRP 0.7 59 G6PC2-LTS-10 150 5305 3 HomoSapiens G6PC2 LTSLTILQLY Naive T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*01:01 B2M MHCI -8067 chip0423_611879 5.75 12.26 Chip2 T1D_4 T1D TGTGCTTATGCGTCTAATGCCGTTGGTATTAGATATGGCAAGCTTACATTT CAYASNAVGIRYGKLTF TRAV38-2/DV8*01 TRAJ52*01 5.0 246.0 TGTGCCAGTAGTATTGGTCTCTATGGCTACACCTTC CASSIGLYGYTF TRBV19*01 TRBJ1-2*01 25.0 1260.0 CAYASNAVGIRYGKLTF_CASSIGLYGYTF 1 5529 M1 FLU 0.57 1250 NEG 148 5381 7 InfluenzaA M1 GILGFVFTL transitional T cells between effector and memory populations PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*02:01 B2M MHCI -8068 chip0423_37312 -0.96 7.4 Chip2 healthy_4 healthy TGCGCCAGCACCCTGGGCGATCATGAGCAGTTCTTC CASTLGDHEQFF TRBV5-1*01 TRBJ2-1*01 25.0 2257.0 _CASTLGDHEQFF 1 8336 ZNT8-YAK-9 ZNT8 0.93 59 NEG 145 8191 3 HomoSapiens ZNT8 YAKWKLCSA Naive T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-B*08:01 B2M MHCI -8069 chip0423_860094 -3.46 12.14 Chip2 T1D_4 T1D TGTGCTCTGAGCAGATCAGATGGCCAGAAGCTGCTCTTT CALSRSDGQKLLF TRAV19*01 TRAJ16*01 24.0 2012.0 CALSRSDGQKLLF_ 1 4361 ZNT8-VTD-9 ZNT8 0.47 65 NEG 149 4212 1 HomoSapiens ZNT8 VTDAAHLLI Naive T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*01:01 B2M MHCI -8070 chip0423_270368 10.91 8.72 Chip2 T1D_4 T1D _ 6746 3878 EBNA3A-193-201 EBV 0.5 1022 NEG 174 3704 10 EBV EBNA3A FLRGRAYGL effector memory T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-B*08:01 B2M MHCI -8071 chip0423_353561 15.25 10.91 Chip2 T1D_5 T1D TGTGCAATGAGGGCCATTGAGGGGGCAAACAACCTCTTCTTT CAMRAIEGANNLFF TRAV14/DV4*01 TRAJ36*01 37.0 2071.0 CAMRAIEGANNLFF_ 17 2894 BZLF1-190-197 EBV 0.67 2156 NEG 171 2723 12 EBV BZLF1 RAKFKQLL effector T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-B*08:01 B2M MHCI -8072 chip0423_129726 6.78 12.32 Chip2 healthy_3 healthy TGTGTGGTGAACGGGGAAAATGCCAGACTCATGTTT CVVNGENARLMF TRAV12-1*01 TRAJ31*01 22.0 1288.0 CVVNGENARLMF_ 5 6643 NP44-52 FLU 0.98 474 NP44-52 146 6497 7 InfluenzaA NP CTELKLSDY transitional T cells between effector and memory populations PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*01:01 B2M MHCI -8073 chip0423_99327 13.61 10.77 Chip2 T1D_4 T1D TGCGCCAGCAGCTTGGAGCTGGGGCTTCCCTACGAGCAGTACTTC CASSLELGLPYEQYF TRBV5-1*01 TRBJ2-7*01 29.0 2173.0 _CASSLELGLPYEQYF 8 4427 EBNA3A-158-166 EBV 0.67 444 NEG 151 4276 12 EBV EBNA3A QAKWRLQTL effector T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-B*08:01 B2M MHCI -8074 chip0423_36139 6.97 10.2 Chip2 healthy_3 healthy TGCGCTGCTTCCAGCAGTGCTTCCAAGATCATCTTT CAASSSASKIIF TRAV1-1*01 TRAJ3*01 8.0 891.0 TGCGCCAGCAGCCAAGATGGACTAGCGGCAACTAGCACAGATACGCAGTTTTTT CASSQDGLAATSTDTQFF TRBV4-1*01 TRBJ2-3*01 35.0 993.0 CAASSSASKIIF_CASSQDGLAATSTDTQFF 1 8449 NP44-52 FLU 0.5 474 NP44-52 137 8312 7 InfluenzaA NP CTELKLSDY transitional T cells between effector and memory populations PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*01:01 B2M MHCI -8075 chip0423_670185 -3.55 8.62 Chip2 T1D_4 T1D TGTGTTGTGTGTCACCTTACAATACCAATGCCATGCGCCTT CVVCHLac?NTNAMRL TRAV8-2*01 TRAJ43*01 16.0 885.0 TGTGCCAGCAGCGTAGGCAGGGCCCAGTCGGTAGCTTTCTTT CASSVGRAQSVAFF TRBV9*01 TRBJ1-1*01 17.0 976.0 CVVCHLac?NTNAMRL_CASSVGRAQSVAFF 1 7271 GAD2-RMM-9 GAD65 0.58 9 NEG 155 7116 2 HomoSapiens GAD2 RMMEYGTTM Naive T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-B*08:01 B2M MHCI -8076 chip0423_595143 -2.77 9.46 Chip2 healthy_3 healthy TGTGCTCTAGCCGACCGGTACTAGCTATGGAAAGCTGACATTT CALADRY??tSYGKLTF TRAV16*01 TRAJ52*01 1.0 42.0 CALADRY??tSYGKLTF_ 1 6779 PGT-178 PGT 0.53 1480 PGT-178 148 6631 2 HomoSapiens PGT LLAGIGTVPI Naive T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*02:01 B2M MHCI -8077 chip0423_347064 13.5 8.21 Chip2 T1D_6 T1D TGTGCCAGCAGCTTGGGACAGGCCTACGAGCAGTACTTC CASSLGQAYEQYF TRBV7-8*01 TRBJ2-7*01 36.0 2331.0 _CASSLGQAYEQYF 175 2294 EBNA3A-193-201 EBV 0.87 1022 EBNA3A-193-201 176 2118 10 EBV EBNA3A FLRGRAYGL effector memory T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-B*08:01 B2M MHCI -8078 chip0423_216010 6.37 12.98 Chip2 healthy_3 healthy _ 6746 5899 NP44-52 FLU 0.51 474 NP44-52 137 5762 7 InfluenzaA NP CTELKLSDY transitional T cells between effector and memory populations PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*01:01 B2M MHCI -8079 chip0423_845353 6.08 13.24 Chip2 healthy_3 healthy TGTGCCAGCAGTCTATTCGGGGCCTTTGGGGAAAGTTACGAGCAGTACTTC CASSLFGAFGESYEQYF TRBV28*01 TRBJ2-7*01 1.0 50.0 _CASSLFGAFGESYEQYF 1 4402 MART1-ALA MART1 0.43 269 NEG 152 4250 7 HomoSapiens MART1 ALAGIGILTV transitional T cells between effector and memory populations PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*02:01 B2M MHCI -8080 chip0423_644148 10.44 9.06 Chip2 T1D_4 T1D TGTGCCAGCAGCCAAGTCAACAACCCGGGGGATGGCTACACCTTC CASSQVNNPGDGYTF TRBV14*01 TRBJ1-2*01 17.0 359.0 _CASSQVNNPGDGYTF 94 5743 EBNA3A-158-166 EBV 0.59 444 NEG 177 5566 10 EBV EBNA3A QAKWRLQTL effector memory T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-B*08:01 B2M MHCI -8081 chip0423_310154 10.77 8.04 Chip2 healthy_4 healthy _ 6746 5593 EBV-BRLF1 EBV 0.95 1264 EBV-BRLF1 159 5434 10 EBV BRLF1 YVLDHLIVV effector memory T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*02:01 B2M MHCI -8082 chip0423_552338 -1.15 10.01 Chip2 T1D_5 T1D TGTGCTACGCCCAGCTCCGGCAACACACCTCTTGTCTTT CATPSSGNTPLVF TRAV17*01 TRAJ29*01 10.0 359.0 TGCGCCAGCAGCTTGGAAGGACTAGCGGGGGGTAATGAGCAGTTCTTC CASSLEGLAGGNEQFF TRBV5-1*01 TRBJ2-1*01 40.0 2065.0 CATPSSGNTPLVF_CASSLEGLAGGNEQFF 1 6150 INS-MAL-8 INS 0.52 38 NEG 164 5986 3 HomoSapiens INS MALWMRLL Naive T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-B*08:01 B2M MHCI -8083 chip0423_413803 12.37 7.3 Chip2 T1D_6 T1D TGTGCCAGCAGCTTGGGACAGGCCTACGAGCAGTACTTC CASSLGQAYEQYF TRBV7-8*01 TRBJ2-7*01 31.0 1377.0 _CASSLGQAYEQYF 175 4122 EBNA3A-193-201 EBV 0.89 1022 NEG 187 3935 10 EBV EBNA3A FLRGRAYGL effector memory T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-B*08:01 B2M MHCI -8084 chip0423_521063 14.23 9.19 Chip2 T1D_4 T1D TGTGCTGTGAGTGATGGAGAAGGAGCCCAGAAGCTGGTATTT CAVSDGEGAQKLVF TRAV8-6*01 TRAJ54*01 36.0 1864.0 TGTGCCAGCAGCTTAACGGTTCTGGCAGGTCCAAACACTGAAGCTTTCTTT CASSLTVLAGPNTEAFF TRBV7-3*01 TRBJ1-1*01 23.0 942.0 CAVSDGEGAQKLVF_CASSLTVLAGPNTEAFF 44 3774 BZLF1-190-197 EBV 0.92 2156 BZLF1-190-197 145 3629 12 EBV BZLF1 RAKFKQLL effector T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-B*08:01 B2M MHCI -8085 chip0423_440841 -3.62 10.61 Chip2 T1D_4 T1D TGTGCAATGAGCCTATCTAACTTTGGAAATGAGAAATTAACCTTT CAMSLSNFGNEKLTF TRAV12-3*01 TRAJ48*01 46.0 1935.0 TGTGCAAATGAGCCTATCTAACTTTGGAAATGAGAAATTAACCTTT CANEPI*ct??ttGNEKLTF TRAV12-3*01 TRAJ48*01 48.0 1938.0 0.38 CAMSLSNFGNEKLTF_ 16 6401 PGT-178 PGT 0.67 1480 NEG 149 6252 2 HomoSapiens PGT LLAGIGTVPI Naive T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*02:01 B2M MHCI -8086 chip0423_256450 10.83 6.85 Chip2 healthy_4 healthy TGCGCCAGCAGCCAAGCCCCGGGACAGCGCACCGGGGAGCCGTTTTTT CASSQAPGQRTGEPFF TRBV4-1*01 TRBJ2-2*01 5.0 100.0 _CASSQAPGQRTGEPFF 1 5390 BZLF1-190-197 EBV 0.89 2156 NEG 189 5201 10 EBV BZLF1 RAKFKQLL effector memory T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-B*08:01 B2M MHCI -8087 chip0423_45751 -0.06 6.32 Chip2 T1D_5 T1D TGTGCCTGTCCTAGCCATCAAAAGCTGAGCTTT CACPSHQKLSF TRAV38-1*01 TRAJ52*01 2.0 221.0 CACPSHQKLSF_ 1 9003 GAD2-SRK-8 GAD65 0.45 10 GAD2-SRK-8 160 8843 3 HomoSapiens GAD2 SRKHKWKL Naive T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-B*08:01 B2M MHCI -8088 chip0423_879780 -1.82 10.31 Chip2 T1D_6 T1D _ 6746 5733 IAPP-LNH-9 IAPP 0.75 15 IAPP-LNH-9 147 5586 3 HomoSapiens IAPP LNHLKATPI Naive T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-B*08:01 B2M MHCI -8089 chip0423_802233 14.69 8.21 Chip2 T1D_6 T1D TGTGCCAGCAGCTTGGGACAGGCCTACGAGCAGTACTTC CASSLGQAYEQYF TRBV7-8*01 TRBJ2-7*01 33.0 2006.0 _CASSLGQAYEQYF 175 5108 EBNA3A-193-201 EBV 1.0 1022 NEG 173 4935 12 EBV EBNA3A FLRGRAYGL effector T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-B*08:01 B2M MHCI -8090 chip0423_786724 10.61 6.9 Chip2 T1D_4 T1D TGTGCTGTCGATTCGGGAAACACACCTCTTGTCTTT CAVDSGNTPLVF TRAV1-2*01 TRAJ29*01 1.0 11.0 CAVDSGNTPLVF_ 1 6481 EBNA3A-158-166 EBV 0.78 444 EBNA3A-158-166 180 6301 10 EBV EBNA3A QAKWRLQTL effector memory T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-B*08:01 B2M MHCI -8091 chip0423_189521 5.07 9.74 Chip2 T1D_4 T1D TGTGCCAGCAGTTACTCAAGTACAGGGGAGTACTTC CASSYSSTGEYF TRBV6-2*01,TRBV6-3*01 TRBJ2-7*01 94.0 4715.0 _CASSYSSTGEYF 32 6061 EBV-LMP1-1 EBV 0.75 237 NEG 183 5878 6 EBV LMP1 YLLEMLWRL central memory T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*02:01 B2M MHCI -8092 chip0423_11820 8.8 9.34 Chip2 T1D_4 T1D TGTGCCAGCAGCTTAGCGGTCGGAGAAGGGCCCCAGCATTTT CASSLAVGEGPQHF TRBV7-9*01 TRBJ1-5*01 30.0 1258.0 _CASSLAVGEGPQHF 113 4948 BZLF1-190-197 EBV 0.95 2156 BZLF1-190-197 171 4777 8 EBV BZLF1 RAKFKQLL effector memory T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-B*08:01 B2M MHCI -8093 chip0423_607271 12.49 6.89 Chip2 T1D_6 T1D TGTGCCAGCAGCTTGGGACAGGCCTACGAGCAGTACTTC CASSLGQAYEQYF TRBV7-8*01 TRBJ2-7*01 8.0 556.0 _CASSLGQAYEQYF 175 4451 EBNA3A-193-201 EBV 0.92 1022 NEG 189 4262 10 EBV EBNA3A FLRGRAYGL effector memory T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-B*08:01 B2M MHCI -8094 chip0423_430410 -3.07 9.19 Chip2 T1D_5 T1D _ 6746 5330 PREINS-2-10 INS 0.44 37 NEG 145 5185 2 HomoSapiens PREINS ALWMRLLPL Naive T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*02:01 B2M MHCI -8095 chip0423_715830 12.07 6.98 Chip2 T1D_4 T1D TGCATCCTGCCATTGGAGGGTGGTACTAGCTATGGAAAGCTGACATTT CILPLEGGTSYGKLTF TRAV26-2*01 TRAJ52*01 4.0 148.0 TGTGCCAGCAGCTCGGGTCGAGCCTACGAGCGGTACTTC CASSSGRAYERYF TRBV7-8*01 TRBJ2-7*01 11.0 673.0 CILPLEGGTSYGKLTF_CASSSGRAYERYF 1 5203 EBNA3A-193-201 EBV 0.73 1022 EBNA3A-193-201 178 5025 10 EBV EBNA3A FLRGRAYGL effector memory T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-B*08:01 B2M MHCI -8096 chip0423_452944 -1.9 10.64 Chip2 T1D_5 T1D TGTGCTGTGAGCAGCGATGGGAACAACCGTACGCTGCTTTAG CAVSSDGNNRTLL* TRAV1-2*01 TRAJ38*01 26.0 1276.0 TGTGCCAGCAGCCTACACAGGGGTGCCGAAGAAAAACTGTTTTTT CASSLHRGAEEKLFF TRBV7-2*01 TRBJ1-4*01 57.0 1959.0 CAVSSDGNNRTLL*_CASSLHRGAEEKLFF 1 5126 GAD2-RMM-9 GAD65 0.56 9 GAD2-RMM-9 170 4956 3 HomoSapiens GAD2 RMMEYGTTM Naive T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-B*08:01 B2M MHCI -8097 chip0423_35903 -3.61 7.86 Chip2 T1D_6 T1D TGTGCCAGCCGTGAAGTGGGGGGGACACCTACGAGCAGTACTTC CASREVGg?gDTYEQYF TRBV2*01 TRBJ2-7*01 22.0 1065.0 _CASREVGg?gDTYEQYF 1 7726 POL-132-140 HIV 0.85 37 NEG 152 7574 2 HIV-1 POL LVGPTPVNI Naive T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*02:01 B2M MHCI -8098 chip0423_660434 11.75 7.28 Chip2 T1D_5 T1D TGTGCAGCTACCGAAACCTCCTACGACAAGGTGATATTT CAATETSYDKVIF TRAV13-1*01 TRAJ50*01 19.0 1937.0 CAATETSYDKVIF_ 13 5012 BZLF1-190-197 EBV 0.69 2156 NEG 160 4852 10 EBV BZLF1 RAKFKQLL effector memory T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-B*08:01 B2M MHCI -8099 chip0423_134875 -2.61 10.31 Chip2 T1D_5 T1D _ 6746 5109 ZNT8-VTD-9 ZNT8 0.79 65 ZNT8-VTD-9 148 4961 4 HomoSapiens ZNT8 VTDAAHLLI Naive T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*01:01 B2M MHCI -8100 chip0423_676212 -2.22 12.62 Chip2 T1D_4 T1D TGCATCGTCAGAGTCTCTGGTTCTGCAAGGCAACTGACCTTT CIVRVSGSARQLTF TRAV26-1*01 TRAJ22*01 38.0 2814.0 TGCGGCACAGGGCAGTTCAGGAGGAGGTGCTGACGGACTCACCTTT CGTGQFRag??gaGADGLTF TRAV30*01 TRAJ45*01 29.0 1463.0 0.36 CIVRVSGSARQLTF_ 1 3820 G6PC2-YLK-8 IGRP 1.0 27 NEG 139 3681 1 HomoSapiens G6PC2 YLKTNLFL Naive T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-B*08:01 B2M MHCI -8101 chip0423_318827 -3.51 11.72 Chip2 T1D_4 T1D _ 6746 4454 GAD2-VSA-10 GAD65 0.74 21 NEG 149 4305 1 HomoSapiens GAD2 VSATAGTTVY Naive T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*01:01 B2M MHCI -8102 chip0423_751253 14.24 10.56 Chip2 T1D_5 T1D TGTGCCAGCAGCTCCGTTGGTCAGAGGGATTCACCCCTCCACTTT CASSSVGQRDSPLHF TRBV7-9*01 TRBJ1-6*01 13.0 691.0 _CASSSVGQRDSPLHF 1 2245 BZLF1-190-197 EBV 0.6 2156 NEG 191 2054 12 EBV BZLF1 RAKFKQLL effector T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-B*08:01 B2M MHCI -8103 chip0423_478847 13.13 7.23 Chip2 T1D_6 T1D TGCATCCTCCCACTTGCTGGTGGTACTAGCTATGGAAAGCTGACATTT CILPLAGGTSYGKLTF TRAV26-2*01 TRAJ52*01 101.0 5067.0 TGTGCCAGCAGCTTGGGACAGGCCTACGAGCAGTACTTC CASSLGQAYEQYF TRBV7-8*01 TRBJ2-7*01 28.0 1646.0 CILPLAGGTSYGKLTF_CASSLGQAYEQYF 308 5341 EBNA3A-193-201 EBV 0.74 1022 NEG 180 5161 10 EBV EBNA3A FLRGRAYGL effector memory T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-B*08:01 B2M MHCI -8104 chip0423_234862 -2.12 8.18 Chip2 T1D_5 T1D TGTGCCAGCAGCGCCTCGACAGCGCGCGAGCAGTACTTC CASSASTAREQYF TRBV9*01 TRBJ2-7*01 18.0 1327.0 _CASSASTAREQYF 1 7978 GFAP-LRL-8 GFAP 0.43 18 GFAP-LRL-8 139 7839 2 HomoSapiens GFAP LRLRLDQL Naive T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-B*08:01 B2M MHCI -8105 chip0423_437427 11.81 9.66 Chip2 T1D_4 T1D TGTGCTGTCAATTCAGGAAACACACCTCTTGTCTTT CAVNSGNTPLVF TRAV1-2*01 TRAJ29*01 1.0 127.0 TGCGCCGGCAGCCGTGTCGACAACCCGGTGGATCGCTACACCTTC CAGSRVDNPVDRYTF TRBV14*01 TRBJ1-2*01 2.0 7.0 CAVNSGNTPLVF_CAGSRVDNPVDRYTF 1 5310 EBNA3A-158-166 EBV 0.82 444 NEG 181 5129 10 EBV EBNA3A QAKWRLQTL effector memory T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-B*08:01 B2M MHCI -8106 chip0423_55452 -2.82 8.04 Chip2 T1D_5 T1D TGTGCAATGGGGGGATGGATAGCAGCTATAAATTGATCTTC CAMGGWat?SSYKLIF TRAV14/DV4*01 TRAJ12*01 1.0 32.0 TGTGCCAGTTTAGGTGGTTGGCGGCAGTATTTT CASLGGWRQYF TRBV27*01 TRBJ2-3*01 12.0 924.0 CAMGGWat?SSYKLIF_CASLGGWRQYF 1 5880 G6PC2-YLK-8 IGRP 0.4 27 NEG 148 5732 2 HomoSapiens G6PC2 YLKTNLFL Naive T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-B*08:01 B2M MHCI -8107 chip0423_768293 10.42 9.2 Chip2 T1D_5 T1D TGTGCAGCAACGGAAACCTCCTACGACAAGGTGATATTT CAATETSYDKVIF TRAV13-1*01 TRAJ50*01 21.0 1940.0 TGTGCCCGCCGCTTAGCGGTCGGAGCCCGGCCCCAGCATTTT CARRLAVGARPQHF TRBV7-9*01 TRBJ1-5*01 9.0 738.0 CAATETSYDKVIF_CARRLAVGARPQHF 1 3360 BZLF1-190-197 EBV 0.73 2156 BZLF1-190-197 145 3215 10 EBV BZLF1 RAKFKQLL effector memory T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-B*08:01 B2M MHCI -8108 chip0423_489438 -2.89 9.93 Chip2 T1D_6 T1D TGTGCCGTCCCCTACCGGGATGACAAGATCATCTTT CAVPYRDDKIIF TRAV12-2*01 TRAJ30*01 1.0 100.0 TGTGCCAGCAGTTACGGGACAGGGATGGGGCACACCATATATTTT CASSYGTGMGHTIYF TRBV6-5*01 TRBJ1-3*01 15.0 534.0 CAVPYRDDKIIF_CASSYGTGMGHTIYF 1 6677 MART1-ALA MART1 0.5 269 NEG 148 6529 2 HomoSapiens MART1 ALAGIGILTV Naive T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*02:01 B2M MHCI -8109 chip0423_85196 14.05 8.91 Chip2 T1D_4 T1D GGTGCCGTGATCACAGTTCGTTATAACGACTACAGGCTCGGCTTT GAVITVRYNDYRLGF TRAV12-2*01 TRAJ20*01 37.0 1921.0 TGCGCCCGCCGCCACGGACAGGGGGAGAACACTGAAGCTTTCTTT CARRHGQGENTEAFF TRBV4-1*01 TRBJ1-1*01 14.0 442.0 GAVITVRYNDYRLGF_CARRHGQGENTEAFF 1 3491 BZLF1-190-197 EBV 0.63 2156 BZLF1-190-197 161 3330 12 EBV BZLF1 RAKFKQLL effector T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-B*08:01 B2M MHCI -8110 chip0423_85099 13.58 7.12 Chip2 healthy_4 healthy _ 6746 5651 BZLF1-190-197 EBV 0.92 2156 NEG 164 5487 10 EBV BZLF1 RAKFKQLL effector memory T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-B*08:01 B2M MHCI -8111 chip0423_869967 8.71 14.01 Chip2 T1D_4 T1D TGTGCAGGCGCGGGAGGAGGAAGCCAAGGAAATCTCATCCTT CAGAGGGSQGNLIL TRAV27*01 TRAJ42*01 48.0 1783.0 TGTGCCAGTAGTAGCCGCAGCACCGGGGAGCTGTTTTTT CASSSRSTGELFF TRBV19*01 TRBJ2-2*01 1.0 11.0 CAGAGGGSQGNLIL_CASSSRSTGELFF 1 2969 M1 FLU 0.73 1250 NEG 168 2801 11 InfluenzaA M1 GILGFVFTL effector T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*02:01 B2M MHCI -8112 chip0423_828765 8.22 10.6 Chip2 T1D_5 T1D TGTGCAGAGATGGAAACCTCCTACGACAAGGTGATATTT CAEMETSYDKVIF TRAV13-2*01 TRAJ50*01 1.0 189.0 CAEMETSYDKVIF_ 6 5851 BZLF1-190-197 EBV 1.0 2156 NEG 152 5699 8 EBV BZLF1 RAKFKQLL effector memory T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-B*08:01 B2M MHCI -8113 chip0423_359725 13.7 10.8 Chip2 T1D_5 T1D TGTGCAATGAGAGAGGGCGAGGCTGGAGGCTTCAAAACTATCTTT CAMREGEAGGFKTIF TRAV14/DV4*01 TRAJ9*01 19.0 642.0 TGTGCCAGCAGCTTAGGGGGGACAGGGTTCCAGCCCCAGCACTTT CASSLGGTGFQPQHF TRBV7-9*01 TRBJ1-5*01 58.0 2610.0 CAMREGEAGGFKTIF_CASSLGGTGFQPQHF 3 3269 BZLF1-190-197 EBV 0.67 2156 NEG 157 3112 9 EBV BZLF1 RAKFKQLL effector memory T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-B*08:01 B2M MHCI -8114 chip0423_255981 16.2 10.6 Chip2 T1D_5 T1D TGCCTCGTGGCCGAAACCCGCAGTGGCGTGCGCTTT CLVAETRSGVRF TRAV4*01 TRAJ43*01 24.0 1857.0 TGTGCCAGCAGCTCCCTGGGGGGAGAGGACGAGCAGTACTTC CASSSLGGEDEQYF TRBV7-9*01 TRBJ2-7*01 29.0 1140.0 CLVAETRSGVRF_CASSSLGGEDEQYF 1 2093 NP44-52 FLU 0.5 474 NEG 144 1949 12 InfluenzaA NP CTELKLSDY effector T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*01:01 B2M MHCI -8115 chip0423_577092 -3.76 8.45 Chip2 T1D_6 T1D TGTGCCGTGAAGGGTGGCCAGAAGCTGCTCTTT CAVKGGQKLLF TRAV12-2*01 TRAJ16*01 20.0 1840.0 TGTGCTGTGAGATCACTCTTCTGGTTCTGCAAGGCAACTGACCTTT CAVRSLFtg??gtSARQLTF TRAV3*01 TRAJ22*01 50.0 1894.0 0.68 TGTGCCAGCAGTCCCTTGGGTTTAAGCTCCTACAATGAGCAGTTCTTC CASSPLGLSSYNEQFF TRBV28*01 TRBJ2-1*01 38.0 1268.0 CAVKGGQKLLF_CASSPLGLSSYNEQFF 1 6229 PGT-178 PGT 0.56 1480 PGT-178 182 6047 2 HomoSapiens PGT LLAGIGTVPI Naive T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*02:01 B2M MHCI -8116 chip0423_498770 15.13 8.65 Chip2 T1D_6 T1D TGCATCCTCCCACTTGCTGGTGGTACTAGCTATGGAAAGCTGACATTT CILPLAGGTSYGKLTF TRAV26-2*01 TRAJ52*01 102.0 3448.0 TGTGCCAGCAGCTTGGGACAGGCCTACGAGCAGTACTTC CASSLGQAYEQYF TRBV7-8*01 TRBJ2-7*01 21.0 1052.0 CILPLAGGTSYGKLTF_CASSLGQAYEQYF 308 3692 EBNA3A-193-201 EBV 0.59 1022 EBNA3A-193-201 148 3544 12 EBV EBNA3A FLRGRAYGL effector T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-B*08:01 B2M MHCI -8117 chip0423_255271 -2.43 10.88 Chip2 T1D_5 T1D TGTGCTGTGCCGCACGACTACAAGCTCAGCTTT CAVPHDYKLSF TRAV21*01 TRAJ20*01 22.0 2014.0 TGTGCCAGCAGCTTATTGGGGGGGGCATCAGAGACCCAGTACTTC CASSLLGGASETQYF TRBV7-3*01 TRBJ2-5*01 26.0 912.0 CAVPHDYKLSF_CASSLLGGASETQYF 1 4323 GAD2-VSA-10 GAD65 0.55 21 NEG 152 4171 4 HomoSapiens GAD2 VSATAGTTVY Naive T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*01:01 B2M MHCI -8118 chip0423_840057 -2.83 12.23 Chip2 healthy_3 healthy _ 6746 4282 PGT-178 PGT 0.67 1480 PGT-178 157 4125 1 HomoSapiens PGT LLAGIGTVPI Naive T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*02:01 B2M MHCI -8119 chip0423_703628 6.47 11.16 Chip2 T1D_6 T1D TGTGCTGTGAGAAAATATGGAAACAAACTGGTCTTT CAVRKYGNKLVF TRAV1-2*01 TRAJ47*01 25.0 1893.0 TGTGCCAGCAGCTTAGCGGGTCGTGAGGGTACGCAGTATTTT CASSLAGREGTQYF TRBV11-3*01 TRBJ2-3*01 7.0 336.0 CAVRKYGNKLVF_CASSLAGREGTQYF 1 6948 NP380-388 FLU 0.85 60 NP380-388 176 6772 7 InfluenzaA NP ELRSRYWAI transitional T cells between effector and memory populations PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-B*08:01 B2M MHCI -8120 chip0423_89943 -2.96 7.63 Chip2 T1D_4 T1D TGTGCCGTTAATACTGGAGGCTTCAAAACTATCTTT CAVNTGGFKTIF TRAV12-2*01 TRAJ9*01 32.0 2062.0 TGTGCCAGCGGGGACAGGTCTTGGGAGACCCAGTACTTC CASGDRSWETQYF TRBV6-2*01,TRBV6-3*01 TRBJ2-5*01 29.0 1467.0 CAVNTGGFKTIF_CASGDRSWETQYF 1 7834 MART1-ALA MART1 0.44 269 NEG 154 7680 2 HomoSapiens MART1 ALAGIGILTV Naive T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*02:01 B2M MHCI -8121 chip0423_659748 4.88 11.76 Chip2 healthy_4 healthy _ 6746 2479 M1 FLU 0.64 1250 NEG 148 2331 6 InfluenzaA M1 GILGFVFTL central memory T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*02:01 B2M MHCI -8122 chip0423_621908 6.49 11.36 Chip2 T1D_6 T1D TGTGCAGAGGCTTGGGGGGGGAGCGAAGGAAATCTCAGCTTA CAEAWGGSEGNLSL TRAV25*01 TRAJ42*01 3.0 152.0 TGTGCCAGTAGTATAAGGTCCACCGGGGAGCTGTTTTTT CASSIRSTGELFF TRBV19*01 TRBJ2-2*01 12.0 501.0 CAEAWGGSEGNLSL_CASSIRSTGELFF 1 6797 M1 FLU 0.58 1250 M1 171 6626 7 InfluenzaA M1 GILGFVFTL transitional T cells between effector and memory populations PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*02:01 B2M MHCI -8123 chip0423_500903 12.37 13.42 Chip2 T1D_5 T1D TGTGCAGCAACGGAAACCTCCTACGACAAGGTGATATTT CAATETSYDKVIF TRAV13-1*01 TRAJ50*01 67.0 5145.0 TGTGCCAGCAGTCCCCCGGGGAGAAATGAAAAACTGTTTTTT CASSPPGRNEKLFF TRBV12-3*01,TRBV12-4*01 TRBJ1-4*01 36.0 1043.0 CAATETSYDKVIF_CASSPPGRNEKLFF 34 1856 BZLF1-190-197 EBV 0.71 2156 NEG 139 1717 11 EBV BZLF1 RAKFKQLL effector T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-B*08:01 B2M MHCI -8124 chip0423_44989 10.74 8.75 Chip2 T1D_4 T1D TGTGCCAGCAGCCAAGTCAACAACCCGGGGGATGGCTACACCTTC CASSQVNNPGDGYTF TRBV14*01 TRBJ1-2*01 19.0 570.0 _CASSQVNNPGDGYTF 94 5216 EBNA3A-158-166 EBV 0.57 444 EBNA3A-158-166 184 5032 10 EBV EBNA3A QAKWRLQTL effector memory T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-B*08:01 B2M MHCI -8125 chip0423_312197 10.92 9.82 Chip2 T1D_5 T1D TGTGCAGCACGTGAAACCTCCTACGACAAGGTGATATTT CAARETSYDKVIF TRAV13-1*01 TRAJ50*01 13.0 842.0 TGTGCCAGCAGCGTATCCCGCTATCAGAACACCGGGGAGCTGCTTTTT CASSVSRYQNTGELLF TRBV9*01 TRBJ2-2*01 14.0 490.0 CAARETSYDKVIF_CASSVSRYQNTGELLF 1 5403 BZLF1-190-197 EBV 0.8 2156 NEG 147 5256 9 EBV BZLF1 RAKFKQLL effector memory T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-B*08:01 B2M MHCI -8126 chip0423_183417 -1.25 7.16 Chip2 T1D_5 T1D TGTGCTGCCAGAACAAGGAGCAAATGGGCACTTAACCTTT CAARTRag??caNGHLTF TRAV41*01 TRAJ48*01 25.0 1854.0 CAARTRag??caNGHLTF_ 1 8226 IAPP-STN-9 IAPP 0.8 48 IAPP-STN-9 151 8075 3 HomoSapiens IAPP STNVGSNTY Naive T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*01:01 B2M MHCI -8127 chip0423_173018 -3.8 11.4 Chip2 T1D_6 T1D TGTGCCAGCAGCCAAGATCCCAGGACAGGGCGTACTGAAGCTTTCTTT CASSQDPRTGRTEAFF TRBV3-1*01 TRBJ1-1*01 16.0 771.0 _CASSQDPRTGRTEAFF 1 4343 PGT-178 PGT 0.91 1480 NEG 137 4206 1 HomoSapiens PGT LLAGIGTVPI Naive T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*02:01 B2M MHCI -8128 chip0423_172680 5.69 13.16 Chip2 T1D_4 T1D TGTGCAATGAGAGAGGGCGATTCCAGCTTTGGAAATGAGAAATTAACCTTT CAMREGDSSFGNEKLTF TRAV14/DV4*01 TRAJ48*01 84.0 1850.0 TGTGCCAGCAGCGTAGGGGGGGGGGTCACGGACACTGAAGCTTTCTTT CASSVGGGVTDTEAFF TRBV9*01 TRBJ1-1*01 34.0 1790.0 CAMREGDSSFGNEKLTF_CASSVGGGVTDTEAFF 1 4325 M1 FLU 1.0 1250 NEG 141 4184 7 InfluenzaA M1 GILGFVFTL transitional T cells between effector and memory populations PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*02:01 B2M MHCI -8129 chip0423_120441 -3.48 11.05 Chip2 T1D_6 T1D TGTGCCAGCAGTTTATCGCTAGTGGAGACCGGGGAGCTGTTTTTT CASSLSLVETGELFF TRBV27*01 TRBJ2-2*01 57.0 3401.0 _CASSLSLVETGELFF 1 4869 PGT-178 PGT 0.48 1480 PGT-178 151 4718 2 HomoSapiens PGT LLAGIGTVPI Naive T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*02:01 B2M MHCI -8130 chip0423_37803 5.87 13.35 Chip2 healthy_3 healthy TGTGCCAGCTCCCCGGATACTCGCAACGAGCAGTACTTC CASSPDTRNEQYF TRBV18*01 TRBJ2-7*01 37.0 3289.0 _CASSPDTRNEQYF 1 8906 NP44-52 FLU 0.61 474 NP44-52 165 8741 7 InfluenzaA NP CTELKLSDY transitional T cells between effector and memory populations PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*01:01 B2M MHCI -8131 chip0423_854336 12.07 13.32 Chip2 T1D_5 T1D _ 6746 1780 BZLF1-190-197 EBV 0.4 2156 NEG 158 1622 11 EBV BZLF1 RAKFKQLL effector T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-B*08:01 B2M MHCI -8132 chip0423_821887 4.76 11.93 Chip2 healthy_4 healthy _ 6746 2817 M1 FLU 1.0 1250 NEG 153 2664 6 InfluenzaA M1 GILGFVFTL central memory T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*02:01 B2M MHCI -8133 chip0423_350517 -0.04 6.58 Chip2 healthy_3 healthy _ 6746 7578 PGT-178 PGT 0.71 1480 PGT-178 147 7431 3 HomoSapiens PGT LLAGIGTVPI Naive T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*02:01 B2M MHCI -8134 chip0423_880308 -2.98 9.06 Chip2 T1D_4 T1D TGTGCAGCTCCCTATTCTGGGGGTTACCAGAAAGTTACCTTT CAAPYSGGYQKVTF TRAV13-1*01 TRAJ13*01 32.0 1959.0 TGTGCCAGCAGTTTAGGGCAGGGGTACTACAATGAGCAGTTCTTC CASSLGQGYYNEQFF TRBV28*01 TRBJ2-1*01 9.0 506.0 CAAPYSGGYQKVTF_CASSLGQGYYNEQFF 1 5648 GAD2-TLK-8 GAD65 0.5 11 GAD2-TLK-8 144 5504 2 HomoSapiens GAD2 TLKKMREI Naive T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-B*08:01 B2M MHCI -8135 chip0423_449673 7.64 10.33 Chip2 T1D_6 T1D TGCGCCAGCAGTGACATTAGGGAGGGGCAGGGTGAAGCTTTCTTT CASSDIREGQGEAFF TRBV10-2*01 TRBJ1-1*01 20.0 865.0 _CASSDIREGQGEAFF 37 6563 EBNA3A-158-166 EBV 0.66 444 EBNA3A-158-166 166 6397 7 EBV EBNA3A QAKWRLQTL transitional T cells between effector and memory populations PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-B*08:01 B2M MHCI -8136 chip0423_436597 15.79 10.79 Chip2 T1D_5 T1D TGTGCAGGGCAAAGGGAAACCTCCTACGACAAGGTGTTGTTT CAGQRETSYDKVLF TRAV25*01 TRAJ50*01 5.0 266.0 TGTGCCAGCTCCCAGTTGGGGGGGGTTTACAATGAGCAGTTCTTC CASSQLGGVYNEQFF TRBV7-9*01 TRBJ2-1*01 9.0 524.0 CAGQRETSYDKVLF_CASSQLGGVYNEQFF 1 2472 BZLF1-190-197 EBV 0.84 2156 BZLF1-190-197 164 2308 12 EBV BZLF1 RAKFKQLL effector T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-B*08:01 B2M MHCI -8137 chip0423_819289 9.03 9.07 Chip2 T1D_4 T1D _ 6746 4901 BZLF1-190-197 EBV 0.81 2156 BZLF1-190-197 175 4726 8 EBV BZLF1 RAKFKQLL effector memory T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-B*08:01 B2M MHCI -8138 chip0423_128552 6.23 14.27 Chip2 healthy_3 healthy TGTGTGGTGAACGGGGAAAATGCCAGACTCATGTTT CVVNGENARLMF TRAV12-1*01 TRAJ31*01 1.0 89.0 TGTGCCAGCAGTGAAATGTGGGGAGCACCCCTCCACTTT CASSEMWGAPLHF TRBV2*01 TRBJ1-6*01 14.0 874.0 CVVNGENARLMF_CASSEMWGAPLHF 12 6744 NP44-52 FLU 0.72 474 NP44-52 187 6557 7 InfluenzaA NP CTELKLSDY transitional T cells between effector and memory populations PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*01:01 B2M MHCI -8139 chip0423_92134 10.33 11.26 Chip2 T1D_4 T1D TGTGCCAGCAGTTTTTTGGGTCAGGGTACACTCGCCGGGGAGCTGTTTTTT CASSFLGQGTLAGELFF TRBV28*01 TRBJ2-2*01 44.0 1904.0 _CASSFLGQGTLAGELFF 3 5137 EBNA3A-158-166 EBV 0.42 444 NEG 151 4986 9 EBV EBNA3A QAKWRLQTL effector memory T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-B*08:01 B2M MHCI -8140 chip0423_735244 8.81 8.59 Chip2 healthy_4 healthy TGTGCAGCAAGTGAAACCTCCTACGACAAGGTGATATTT CAASETSYDKVIF TRAV13-1*01 TRAJ50*01 37.0 2058.0 CAASETSYDKVIF_ 51 6921 BZLF1-190-197 EBV 0.58 2156 NEG 153 6768 8 EBV BZLF1 RAKFKQLL effector memory T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-B*08:01 B2M MHCI -8141 chip0423_592092 9.14 8.36 Chip2 T1D_5 T1D TGCAGTGCTATCCAGGGGGGCACACTGAAGCTTTCTTT CSAIQGg?gHTEAFF TRBV20-1*01 TRBJ1-1*01 1.0 10.0 _CSAIQGg?gHTEAFF 1 5834 BZLF1-190-197 EBV 0.5 2156 NEG 173 5661 8 EBV BZLF1 RAKFKQLL effector memory T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-B*08:01 B2M MHCI -8142 chip0423_619860 6.42 10.93 Chip2 healthy_3 healthy TGTGCCGTGAACCCCAGCTTTCAGAAACTTGTATTT CAVNPSFQKLVF TRAV12-2*01 TRAJ8*01 24.0 2009.0 TGCGCCAGCAGCCAAGAGGGACAGGGTGCCGGGGAGCTGTTTTTT CASSQEGQGAGELFF TRBV4-1*01 TRBJ2-2*01 16.0 758.0 CAVNPSFQKLVF_CASSQEGQGAGELFF 3 7305 NP44-52 FLU 0.86 474 NP44-52 165 7140 7 InfluenzaA NP CTELKLSDY transitional T cells between effector and memory populations PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*01:01 B2M MHCI -8143 chip0423_243903 -1.46 10.32 Chip2 healthy_3 healthy TGTGCAGCAAGCTCTACCGGATAGCAACTATCAGTTGATCTGG CAASSTG??tSNYQLIW TRAV29/DV5*01 TRAJ33*01 1.0 41.0 TGTGCCAGCAGCCCAGAGGGACGTTACGAGCAGTACTTC CASSPEGRYEQYF TRBV7-9*01 TRBJ2-7*01 162.0 9932.0 CAASSTG??tSNYQLIW_CASSPEGRYEQYF 1 6674 NP140-148 FLU 0.7 102 NP140-148 132 6542 3 InfluenzaA NP HSNLNDATY Naive T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*01:01 B2M MHCI -8144 chip0423_867723 7.51 13.12 Chip2 T1D_6 T1D TGTGCCATCAGTGAGTCGACTGATAGTGGACGCCTCTATGGCTACACCTTC CAISESTDSGRLYGYTF TRBV10-3*01 TRBJ1-2*01 35.0 1374.0 _CAISESTDSGRLYGYTF 1 3758 NP44-52 FLU 0.77 474 NP44-52 161 3597 7 InfluenzaA NP CTELKLSDY transitional T cells between effector and memory populations PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*01:01 B2M MHCI -8145 chip0423_653748 -4.21 8.04 Chip2 T1D_4 T1D TGTGCCAGCAGCTTAGCGGGGGCCTCCTACGAGCAGTACTTC CASSLAGASYEQYF TRBV7-9*01 TRBJ2-7*01 54.0 3185.0 _CASSLAGASYEQYF 1 6353 INS-14-23 INS 0.6 9 NEG 119 6234 2 HomoSapiens INS LALWGPDPAA Naive T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*02:01 B2M MHCI -8146 chip0423_482955 11.22 6.88 Chip2 healthy_4 healthy _ 6746 4433 BZLF1-190-197 EBV 1.0 2156 NEG 144 4289 6 EBV BZLF1 RAKFKQLL central memory T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-B*08:01 B2M MHCI -8147 chip0423_444279 14.08 9.81 Chip2 T1D_4 T1D TGCATCGTCAGAGAGGGAGGAGGTGCTGACGGACTCACCTTT CIVREGGGADGLTF TRAV26-1*01 TRAJ45*01 4.0 374.0 TGTGCCAGCAGCTTAGCGGTCGGAGAAGGGCCCCAGCATTTT CASSLAVGEGPQHF TRBV7-9*01 TRBJ1-5*01 21.0 570.0 CIVREGGGADGLTF_CASSLAVGEGPQHF 68 3516 BZLF1-190-197 EBV 0.73 2156 BZLF1-190-197 172 3344 12 EBV BZLF1 RAKFKQLL effector T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-B*08:01 B2M MHCI -8148 chip0423_833001 -3.17 11.43 Chip2 T1D_5 T1D _ 6746 4340 ZNT8-PTE-9 ZNT8 0.73 18 NEG 125 4215 1 HomoSapiens ZNT8 PTEKGANEY Naive T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*01:01 B2M MHCI -8149 chip0423_722827 11.08 7.72 Chip2 T1D_4 T1D TGTGCCAGCAGCCAAGTCAACAACCCGGGGGATGGCTACACCTTC CASSQVNNPGDGYTF TRBV14*01 TRBJ1-2*01 10.0 318.0 _CASSQVNNPGDGYTF 94 4330 EBNA3A-158-166 EBV 0.52 444 NEG 181 4149 10 EBV EBNA3A QAKWRLQTL effector memory T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-B*08:01 B2M MHCI -8150 chip0423_654803 -3.01 8.22 Chip2 healthy_3 healthy GGTGCAATGAAAAAATCTAACTTTGGAAATGAGTAATTAACCTTT GAMKKSNFGNE*LTF TRAV12-3*01 TRAJ48*01 8.0 52.0 TGTGCCAGCAGCCCCAATGGGGGCAATTCTGGAAACACCATATATTTT CASSPNGGNSGNTIYF TRBV7-2*01 TRBJ1-3*01 55.0 1871.0 GAMKKSNFGNE*LTF_CASSPNGGNSGNTIYF 1 7130 PGT-178 PGT 0.68 1480 PGT-178 148 6982 2 HomoSapiens PGT LLAGIGTVPI Naive T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*02:01 B2M MHCI -8151 chip0423_570736 7.32 12.36 Chip2 T1D_6 T1D _ 6746 6034 NP380-388 FLU 0.59 60 NEG 133 5901 7 InfluenzaA NP ELRSRYWAI transitional T cells between effector and memory populations PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-B*08:01 B2M MHCI -8152 chip0423_333743 -1.94 7.22 Chip2 T1D_5 T1D TGTGCTGTGTTGAAAACCTCCTACGACAAGGTGATATTT CAVLKTSYDKVIF TRAV12-2*01 TRAJ50*01 11.0 620.0 TGTGCCAGCAGCTTCCGCGGCCAGGGGATCGGTGAGCAGTACTTC CASSFRGQGIGEQYF TRBV7-9*01 TRBJ2-7*01 41.0 2552.0 CAVLKTSYDKVIF_CASSFRGQGIGEQYF 1 6316 ZNT8-YAY-8 ZNT8 0.5 54 NEG 127 6189 3 HomoSapiens ZNT8 YAYAKWKL Naive T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-B*08:01 B2M MHCI -8153 chip0423_81559 14.81 9.52 Chip2 T1D_5 T1D TGTGCCAGCAGCTTATTAGGGGAGCAGAATTCACCCCTCCACTTT CASSLLGEQNSPLHF TRBV7-9*01 TRBJ1-6*01 64.0 2447.0 _CASSLLGEQNSPLHF 4 5477 BZLF1-190-197 EBV 0.8 2156 NEG 177 5300 12 EBV BZLF1 RAKFKQLL effector T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-B*08:01 B2M MHCI -8154 chip0423_571638 10.96 8.33 Chip2 healthy_4 healthy TGTGCCAGCAGCTCCGGACAGGCCTACGAGCAGTACTTC CASSSGQAYEQYF TRBV7-8*01 TRBJ2-7*01 9.0 424.0 _CASSSGQAYEQYF 49 4363 EBNA3A-193-201 EBV 0.76 1022 NEG 166 4197 10 EBV EBNA3A FLRGRAYGL effector memory T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-B*08:01 B2M MHCI -8155 chip0423_437864 8.94 11.59 Chip2 T1D_6 T1D TGTGCCGTGAAGGACACCGACAAGCTCATCTTT CAVKDTDKLIF TRAV8-1*01 TRAJ34*01 1.0 12.0 CAVKDTDKLIF_ 56 5433 EBV-BRLF1 EBV 0.71 1264 EBV-BRLF1 145 5288 9 EBV BRLF1 YVLDHLIVV effector memory T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*02:01 B2M MHCI -8156 chip0423_739825 -2.75 8.63 Chip2 healthy_4 healthy _ 6746 5867 PGT-178 PGT 0.75 1480 NEG 156 5711 3 HomoSapiens PGT LLAGIGTVPI Naive T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*02:01 B2M MHCI -8157 chip0423_598074 -0.05 8.54 Chip2 healthy_4 healthy TGTGCCAGCAGCCAGAAGACTAGCGGGGGGTATTTGAACACCGGGGAGCTGTTTTCT CASSQKTSGGYLNTGELFS TRBV11-3*01 TRBJ2-2*01 1.0 16.0 _CASSQKTSGGYLNTGELFS 1 8573 PGT-178 PGT 0.89 1480 PGT-178 145 8428 4 HomoSapiens PGT LLAGIGTVPI Naive T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*02:01 B2M MHCI -8158 chip0423_582105 -1.32 6.96 Chip2 healthy_4 healthy TGTGCTGTGCACCTGACAACTGACAGCTGGGGGAAATTGCAGTTT CAVHLTTDSWGKLQF TRAV20*01 TRAJ24*01 78.0 3987.0 CAVHLTTDSWGKLQF_ 1 7259 Gag260-267 HIV 0.62 10 NEG 164 7095 3 HIV-1 Gag EIYKRWII Naive T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-B*08:01 B2M MHCI -8159 chip0423_377301 -2.82 8.26 Chip2 T1D_6 T1D TGTGCAGCACTTACAGGGGAAAATGAGAAATTAACCTTT CAALTGENEKLTF TRAV29/DV5*01 TRAJ48*01 32.0 1929.0 TGTGCCGGACTTATATCTAACTTTGGAAATGAGAAATTAACCTTT CAGLISNFGNEKLTF TRAV12-2*01 TRAJ48*01 27.0 1004.0 0.33 TGTGCCAGCAGCTTAGTCCAGGGTGGGTCAGATACGCAGTATTTT CASSLVQGGSDTQYF TRBV7-2*01 TRBJ2-3*01 46.0 1878.0 CAALTGENEKLTF_CASSLVQGGSDTQYF 1 6128 PGT-178 PGT 0.75 1480 NEG 151 5977 3 HomoSapiens PGT LLAGIGTVPI Naive T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*02:01 B2M MHCI -8160 chip0423_318786 14.5 10.81 Chip2 T1D_5 T1D _ 6746 3888 BZLF1-190-197 EBV 1.0 2156 NEG 160 3728 12 EBV BZLF1 RAKFKQLL effector T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-B*08:01 B2M MHCI -8161 chip0423_297511 7.75 10.78 Chip2 T1D_6 T1D TGTGCTGTGAAGGTTTGGAGATGGCCAGAAGCTGCTCTTT CAVKVWag??atGQKLLF TRAV8-6*01 TRAJ16*01 1.0 29.0 CAVKVWag??atGQKLLF_ 1 6613 EBNA3A-158-166 EBV 1.0 444 NEG 161 6452 7 EBV EBNA3A QAKWRLQTL transitional T cells between effector and memory populations PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-B*08:01 B2M MHCI -8162 chip0423_296010 8.93 12.25 Chip2 T1D_4 T1D TGTGCTGTGAGTGAGAGGGAATATGGAAACAAACTGGTCTTT CAVSEREYGNKLVF TRAV8-4*01 TRAJ47*01 1.0 19.0 CAVSEREYGNKLVF_ 1 3887 BZLF1-190-197 EBV 0.62 2156 BZLF1-190-197 145 3742 7 EBV BZLF1 RAKFKQLL transitional T cells between effector and memory populations PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-B*08:01 B2M MHCI -8163 chip0423_276664 -3.66 9.25 Chip2 T1D_4 T1D TGTGCTTTCTATCCCGGTAACCAGTTCTATTTT CAFYPGNQFYF TRAV38-1*01 TRAJ49*01 1.0 157.0 TGTGCCAGTAGTATAGATCACGGGTCCTACGAGCAGTACTTC CASSIDHGSYEQYF TRBV19*01 TRBJ2-7*01 55.0 3251.0 CAFYPGNQFYF_CASSIDHGSYEQYF 1 7052 HCVNS4B-1807-1816 HCV 0.4 74 NEG 145 6907 2 HCV NS4B LLFNILGGWV Naive T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*02:01 B2M MHCI -8164 chip0423_159285 -2.58 10.66 Chip2 T1D_6 T1D TGCGCCAGCAGTTACGACGGTTATAGCAATCAGCCCCAGCATTTT CASSYDGYSNQPQHF TRBV4-1*01 TRBJ1-5*01 12.0 403.0 _CASSYDGYSNQPQHF 1 6171 INS-MAL-8 INS 0.56 38 NEG 138 6033 3 HomoSapiens INS MALWMRLL Naive T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-B*08:01 B2M MHCI -8165 chip0423_512042 11.3 11.25 Chip2 T1D_4 T1D TGCATCGTCAGAGTCGTGTGTACGGCACTGCCAGTAAACTCCCCTTT CIVRVVCac?GTASKLPF TRAV26-1*01 TRAJ44*01 33.0 1982.0 TGTGCCAGCAGCTTAGCGGTCGGAGAAGGGCCCCAGCATTTT CASSLAVGEGPQHF TRBV7-9*01 TRBJ1-5*01 32.0 994.0 CIVRVVCac?GTASKLPF_CASSLAVGEGPQHF 1 3360 BZLF1-190-197 EBV 0.89 2156 BZLF1-190-197 159 3201 9 EBV BZLF1 RAKFKQLL effector memory T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-B*08:01 B2M MHCI -8166 chip0423_69080 -2.93 9.19 Chip2 T1D_5 T1D _ 6746 5317 Nef13-20 HIV 0.4 19 NEG 149 5168 2 HIV-1 Nef WPTVRERM Naive T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-B*08:01 B2M MHCI -8167 chip0423_804748 14.38 10.72 Chip2 T1D_5 T1D TGTGCAGCAATCGAAACCTCCTACGACAAGGTGATATTT CAAIETSYDKVIF TRAV13-1*01 TRAJ50*01 27.0 2104.0 TGCAGCGTTGGGGGGAACACTGAAGCTTTCTTT CSVGGNTEAFF TRBV29-1*01 TRBJ1-1*01 155.0 11871.0 CAAIETSYDKVIF_CSVGGNTEAFF 4 4051 BZLF1-190-197 EBV 1.0 2156 NEG 147 3904 12 EBV BZLF1 RAKFKQLL effector T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-B*08:01 B2M MHCI -8168 chip0423_176622 6.09 14.08 Chip2 healthy_3 healthy _ 6746 6558 M1 FLU 0.57 1250 M1 155 6403 7 InfluenzaA M1 GILGFVFTL transitional T cells between effector and memory populations PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*02:01 B2M MHCI -8169 chip0423_155847 13.81 8.03 Chip2 T1D_4 T1D TGTGCCAGCAGCTTAGCGGTCGGAGAAGGGCCCCAGCATTTT CASSLAVGEGPQHF TRBV7-9*01 TRBJ1-5*01 16.0 529.0 _CASSLAVGEGPQHF 113 3626 BZLF1-190-197 EBV 0.97 2156 BZLF1-190-197 177 3449 10 EBV BZLF1 RAKFKQLL effector memory T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-B*08:01 B2M MHCI -8170 chip0423_777650 6.42 11.41 Chip2 T1D_6 T1D TGTGCCGGAGACAGCTGGGGGAAATTGCAGTTT CAGDSWGKLQF TRAV12-1*01 TRAJ24*01 10.0 1695.0 TGTGCCAGCAGCCCCGGAGTGGGAGGCGCAGATACGCAGTATTTT CASSPGVGGADTQYF TRBV3-1*01 TRBJ2-3*01 9.0 374.0 CAGDSWGKLQF_CASSPGVGGADTQYF 1 6486 ZNT8-115-123 ZNT8 0.65 74 NEG 159 6327 7 HomoSapiens ZNT8 LLSLFSLWL transitional T cells between effector and memory populations PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*02:01 B2M MHCI -8171 chip0423_503513 7.1 12.94 Chip2 T1D_6 T1D TGTGCAGCAAGCCCTCTCATGAATAATAATGCAGGCAACATGCTCACCTTT CAASPLMNNNAGNMLTF TRAV23/DV6*01 TRAJ39*01 129.0 3697.0 TGTGCCAGCAGCCACAATTACGCTGAGCAGTTCTTC CASSHNYAEQFF TRBV25-1*01 TRBJ2-1*01 47.0 3502.0 CAASPLMNNNAGNMLTF_CASSHNYAEQFF 1 3832 ROTA-VP6 ROTA 0.73 47 NEG 163 3669 7 RotavirusA VP6 TLLANVTAV transitional T cells between effector and memory populations PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*02:01 B2M MHCI -8172 chip0423_39491 -3.72 8.63 Chip2 T1D_4 T1D TGTGCTGTGGACTTCATGAATTATGGTGGTGCTACAAACAAGCTCATCTTT CAVDFMNYGGATNKLIF TRAV36/DV7*01 TRAJ32*01 129.0 3098.0 CAVDFMNYGGATNKLIF_ 1 6900 GAD2-VSA-10 GAD65 0.56 21 GAD2-VSA-10 156 6744 2 HomoSapiens GAD2 VSATAGTTVY Naive T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*01:01 B2M MHCI -8173 chip0423_379669 5.94 12.52 Chip2 T1D_4 T1D TGTGCAGGGAATTATGGAGGAAGCCAAGGAAATCTCATCTTT CAGNYGGSQGNLIF TRAV25*01 TRAJ42*01 29.0 1595.0 TGTGCCAGTAGTCTCAGAAGCACCGGGGAGCTGTTTTTT CASSLRSTGELFF TRBV19*01 TRBJ2-2*01 15.0 1375.0 CAGNYGGSQGNLIF_CASSLRSTGELFF 2 6368 M1 FLU 0.85 1250 M1 132 6236 7 InfluenzaA M1 GILGFVFTL transitional T cells between effector and memory populations PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*02:01 B2M MHCI -8174 chip0423_310942 9.54 10.02 Chip2 T1D_6 T1D TGCATCGCCGTTACCTCGTCCCGGTAACCAGTTCTATTTT CIAVTStc??ccGNQFYF TRAV26-1*01 TRAJ49*01 1.0 16.0 TGCAGCGCCGGCAGGGACGGGACTAATGAAAAACTGTTTTTT CSAGRDGTNEKLFF TRBV29-1*01 TRBJ1-4*01 56.0 4849.0 CIAVTStc??ccGNQFYF_CSAGRDGTNEKLFF 6 5764 EBV-BLMF1 EBV 0.54 2531 NEG 177 5587 9 EBV BLMF1 GLCTLVAML effector memory T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*02:01 B2M MHCI -8175 chip0423_216231 6.3 10.08 Chip2 T1D_6 T1D TGTGCTACGGCGGGACTCTCCGGCTTCTGCACCCTCGCCCTT CATAGLSGFCTLAL TRAV17*01 TRAJ11*01 2.0 9.0 TGCATGGCCCGCTGACAACTCAGGCCCACTAAACTTT CMAR*Q??cSGPLNF TRAV26-1*01 TRAJ37*01 4.0 155.0 0.5 CATAGLSGFCTLAL_ 1 9041 EBV-LMP2-FLY EBV 0.81 355 NEG 152 8889 6 EBV LMP2 FLYALALLL central memory T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*02:01 B2M MHCI -8176 chip0423_876245 11.64 7.31 Chip2 T1D_6 T1D TGTGCCAGCACTTCGACAGAAACCGTCGATGGCTACACCTTC CASTSTETVDGYTF TRBV5-4*01 TRBJ1-2*01 15.0 688.0 _CASTSTETVDGYTF 4 5489 EBNA3A-158-166 EBV 0.41 444 NEG 171 5318 10 EBV EBNA3A QAKWRLQTL effector memory T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-B*08:01 B2M MHCI -8177 chip0423_585082 15.0 9.8 Chip2 T1D_5 T1D TGTGCTGCGGGCCGACCTATAACACCGACAAGCTCATCTTT CAAGRPat?NTDKLIF TRAV20*01 TRAJ34*01 1.0 20.0 TGTGCCAGCAGTCCCGACGGATCCACCGGGGAGCTGTTTTTT CASSPDGSTGELFF TRBV12-3*01,TRBV12-4*01 TRBJ2-2*01 62.0 3214.0 CAAGRPat?NTDKLIF_CASSPDGSTGELFF 1 3277 BZLF1-190-197 EBV 0.6 2156 NEG 151 3126 12 EBV BZLF1 RAKFKQLL effector T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-B*08:01 B2M MHCI -8178 chip0423_789748 12.75 13.26 Chip2 T1D_6 T1D TGCAGCGTGGGGACAGGGGGCACTAATGAAAAACTGTTTTTT CSVGTGGTNEKLFF TRBV29-1*01 TRBJ1-4*01 5.0 71.0 _CSVGTGGTNEKLFF 638 2220 EBV-BLMF1 EBV 0.5 2531 NEG 174 2046 11 EBV BLMF1 GLCTLVAML effector T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*02:01 B2M MHCI -8179 chip0423_579056 -0.63 7.33 Chip2 healthy_3 healthy _ 6746 7018 PGT-178 PGT 0.49 1480 PGT-178 129 6889 3 HomoSapiens PGT LLAGIGTVPI Naive T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*02:01 B2M MHCI -8180 chip0423_578820 -3.9 7.75 Chip2 T1D_4 T1D TGTGCAATAAGCATATCTAACTTTGGAAATGAGAAATTAACCTTT CAISISNFGNEKLTF TRAV12-3*01 TRAJ48*01 44.0 2232.0 TGTGCCAGGAGCAGGGGCCGGGGGAACACCGGGGAGCTGTTTTTT CARSRGRGNTGELFF TRBV7-9*01 TRBJ2-2*01 67.0 3438.0 CAISISNFGNEKLTF_CARSRGRGNTGELFF 1 5748 PGT-178 PGT 0.58 1480 PGT-178 142 5606 2 HomoSapiens PGT LLAGIGTVPI Naive T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*02:01 B2M MHCI -8181 chip0423_113345 -4.21 9.11 Chip2 healthy_3 healthy _ 6746 6168 EBV-LMP1-1 EBV 0.44 237 NEG 132 6036 2 EBV LMP1 YLLEMLWRL Naive T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*02:01 B2M MHCI -8182 chip0423_759333 -2.08 11.69 Chip2 T1D_6 T1D TGTGCCAGCTGTGGGGACATATCCTACAATGAGCAGTTCTTC CASCGDISYNEQFF TRBV2*01 TRBJ2-1*01 16.0 923.0 _CASCGDISYNEQFF 1 4841 PGT-178 PGT 0.56 1480 PGT-178 150 4691 3 HomoSapiens PGT LLAGIGTVPI Naive T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*02:01 B2M MHCI -8183 chip0423_734356 -4.19 10.94 Chip2 T1D_4 T1D TGTGCCAGCAGCCTAGCCCCTGGACTAGCGGAAGAGACCCAGTACTTC CASSLAPGLAEETQYF TRBV3-1*01 TRBJ2-5*01 37.0 1744.0 _CASSLAPGLAEETQYF 1 4957 PGT-178 PGT 0.5 1480 NEG 156 4801 2 HomoSapiens PGT LLAGIGTVPI Naive T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*02:01 B2M MHCI -8184 chip0423_171455 9.96 9.68 Chip2 T1D_5 T1D TGTGCCAGCAGCCCTCTTGGGAGCAATGAAAAACTGTTTTTT CASSPLGSNEKLFF TRBV7-9*01 TRBJ1-4*01 31.0 1151.0 _CASSPLGSNEKLFF 20 6472 BZLF1-190-197 EBV 0.6 2156 NEG 175 6297 9 EBV BZLF1 RAKFKQLL effector memory T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-B*08:01 B2M MHCI -8185 chip0423_845680 -1.28 10.23 Chip2 T1D_6 T1D TGTGCATTCTCTATATCTAACTTTGGAAATGAGAAATTAACCTTT CAFSISNFGNEKLTF TRAV12-3*01 TRAJ48*01 45.0 1883.0 TGTGCCAGCAGTGGAGAAAACAGGGGCCACGAGCAGTACTTC CASSGENRGHEQYF TRBV6-1*01 TRBJ2-7*01 13.0 372.0 CAFSISNFGNEKLTF_CASSGENRGHEQYF 1 6911 PGT-178 PGT 0.72 1480 PGT-178 160 6751 3 HomoSapiens PGT LLAGIGTVPI Naive T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*02:01 B2M MHCI -8186 chip0423_653855 10.6 8.27 Chip2 T1D_5 T1D _ 6746 4520 BZLF1-190-197 EBV 0.41 2156 NEG 161 4359 10 EBV BZLF1 RAKFKQLL effector memory T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-B*08:01 B2M MHCI -8187 chip0423_520762 -2.3 10.54 Chip2 T1D_6 T1D TGTGCAATGAGTCTATCTAACTTTGGAAATGAGAAATTAACCTTT CAMSLSNFGNEKLTF TRAV12-3*01 TRAJ48*01 15.0 393.0 TGTGCCACCAGTGATAATACCGGGACAGCCACCTACAATGAGCAGTTCTTC CATSDNTGTATYNEQFF TRBV24-1*01 TRBJ2-1*01 9.0 322.0 CAMSLSNFGNEKLTF_CATSDNTGTATYNEQFF 1 5754 PGT-178 PGT 0.5 1480 NEG 133 5621 3 HomoSapiens PGT LLAGIGTVPI Naive T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*02:01 B2M MHCI -8188 chip0423_480302 6.13 12.15 Chip2 T1D_4 T1D TGTGCTTTCATGACAAATGCTGGTGGTACTAGCTATGGAAAGCTGACATTT CAFMTNAGGTSYGKLTF TRAV38-1*01 TRAJ52*01 21.0 305.0 TGTGCCAGTAGTTGGGGCAGTCATGGCTACACCTTC CASSWGSHGYTF TRBV19*01 TRBJ1-2*01 26.0 1349.0 CAFMTNAGGTSYGKLTF_CASSWGSHGYTF 1 5904 M1 FLU 0.47 1250 NEG 177 5727 7 InfluenzaA M1 GILGFVFTL transitional T cells between effector and memory populations PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*02:01 B2M MHCI -8189 chip0423_565018 7.82 11.09 Chip2 T1D_4 T1D TGCATCCTGCCTCTTGCTGGTGGTACTAGCTATGGAAAGCTGACATTT CILPLAGGTSYGKLTF TRAV26-2*01 TRAJ52*01 58.0 2255.0 TGTGCCAGCAGCTCCGGACAGGCCTACGAGCAGTACTTC CASSSGQAYEQYF TRBV7-8*01 TRBJ2-7*01 7.0 435.0 CILPLAGGTSYGKLTF_CASSSGQAYEQYF 40 6841 EBNA3A-193-201 EBV 0.67 1022 NEG 169 6672 7 EBV EBNA3A FLRGRAYGL transitional T cells between effector and memory populations PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-B*08:01 B2M MHCI -8190 chip0423_407273 -2.21 8.95 Chip2 T1D_6 T1D TGTGCCAGCCTATTACAGGGGGAGCAGTACTTC CASLLQGEQYF TRBV2*01 TRBJ2-7*01 38.0 2848.0 _CASLLQGEQYF 1 8344 INS-WMR-10 INS 0.61 5 INS-WMR-10 147 8197 3 HomoSapiens INS WMRLLPLLAL Naive T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-B*08:01 B2M MHCI -8191 chip0423_35812 10.87 9.93 Chip2 T1D_5 T1D TGTGCAGCAACGGCAACCTCCTACGACAAGGTGATATCT CAATATSYDKVIS TRAV13-1*01 TRAJ50*01 9.0 768.0 TGTGCCAGCAGTCCCCCGGGGAGAAATGAAAAACTGTTTTTT CASSPPGRNEKLFF TRBV12-3*01,TRBV12-4*01 TRBJ1-4*01 41.0 1165.0 CAATATSYDKVIS_CASSPPGRNEKLFF 1 4450 BZLF1-190-197 EBV 0.82 2156 BZLF1-190-197 145 4305 9 EBV BZLF1 RAKFKQLL effector memory T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-B*08:01 B2M MHCI -8192 chip0423_23848 -4.23 8.97 Chip2 healthy_3 healthy TGTGCCAGCCGTGATCCACCGGGGCCGCCGCGCTTC CASRDPPGPPRF TRBV6-1*01 TRBJ2-7*01 6.0 326.0 _CASRDPPGPPRF 1 5512 ZNT8-228-236 ZNT8 0.67 8 NEG 155 5357 2 HomoSapiens ZNT8 SISVLISAL Naive T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*02:01 B2M MHCI -8193 chip0423_537156 -3.24 9.32 Chip2 T1D_4 T1D TGTGCTCCCAAATGCTACACCGGTAACCAGTTCTATTTT CAPKCYTGNQFYF TRAV19*01 TRAJ49*01 21.0 2003.0 TGTGCCAGCAGTTCTACCGGGGGGGACAGCAACACTGAAGCTTTCTTT CASSSTGGDSNTEAFF TRBV6-5*01 TRBJ1-1*01 44.0 1396.0 CAPKCYTGNQFYF_CASSSTGGDSNTEAFF 1 4936 PGT-178 PGT 0.68 1480 PGT-178 147 4789 2 HomoSapiens PGT LLAGIGTVPI Naive T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*02:01 B2M MHCI -8194 chip0423_511622 11.46 7.17 Chip2 T1D_5 T1D TGTGCCAGCAGCTTATTAGGAGGGAAGTCAGACACCATATATTTT CASSLLGGKSDTIYF TRBV7-9*01 TRBJ1-3*01 21.0 446.0 _CASSLLGGKSDTIYF 1 5621 BZLF1-190-197 EBV 0.76 2156 BZLF1-190-197 164 5457 10 EBV BZLF1 RAKFKQLL effector memory T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-B*08:01 B2M MHCI -8195 chip0423_455200 -1.85 11.52 Chip2 T1D_4 T1D TGTGCAATGATCTATTCTAACTTTGGAAATGAGAAATTAACCTTT CAMIYSNFGNEKLTF TRAV12-3*01 TRAJ48*01 15.0 387.0 TGTGCCAGCGAGCAACGCGGGGAGCTGTTTTTT CASEQRGELFF TRBV19*01 TRBJ2-2*01 52.0 4733.0 CAMIYSNFGNEKLTF_CASEQRGELFF 1 5254 PGT-178 PGT 0.69 1480 PGT-178 133 5121 3 HomoSapiens PGT LLAGIGTVPI Naive T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*02:01 B2M MHCI -8196 chip0423_337000 -2.87 7.81 Chip2 healthy_3 healthy _ 6746 8952 PGT-178 PGT 0.69 1480 PGT-178 140 8812 2 HomoSapiens PGT LLAGIGTVPI Naive T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*02:01 B2M MHCI -8197 chip0423_545906 -0.37 8.49 Chip2 healthy_4 healthy TGTGCCAGCAGCAATCCCAACACCGGGGAGCTGTTTTTT CASSNPNTGELFF TRBV7-9*01 TRBJ2-2*01 16.0 903.0 _CASSNPNTGELFF 1 6536 INS-WMR-8 INS 0.69 17 NEG 153 6383 4 HomoSapiens INS WMRLLPLL Naive T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-B*08:01 B2M MHCI -8198 chip0423_462953 9.23 9.47 Chip2 T1D_4 T1D TGTGCTGTCAATTCAGGAAACACACCTCTTGTCTTT CAVNSGNTPLVF TRAV1-2*01 TRAJ29*01 22.0 1551.0 TGTGCCAGCAGCCAAGTCAACAACCCGGGGGATGGCTACACCTTC CASSQVNNPGDGYTF TRBV14*01 TRBJ1-2*01 37.0 848.0 CAVNSGNTPLVF_CASSQVNNPGDGYTF 31 6691 EBNA3A-158-166 EBV 0.47 444 EBNA3A-158-166 151 6540 8 EBV EBNA3A QAKWRLQTL effector memory T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-B*08:01 B2M MHCI -8199 chip0423_695142 -2.16 15.88 Chip2 T1D_5 T1D TGTGCCAGCAGCCAAGGGAGGGGTTACGAGCAGTACTTC CASSQGRGYEQYF TRBV4-2*01 TRBJ2-7*01 32.0 1673.0 _CASSQGRGYEQYF 1 1583 G6PC2-LTS-10 IGRP 0.56 59 NEG 141 1442 1 HomoSapiens G6PC2 LTSLTILQLY Naive T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*01:01 B2M MHCI -8200 chip0423_188905 8.88 7.53 Chip2 healthy_4 healthy TGTGCCAGCAGCTCCCCCGGGACTAGCGGGACCTACGAGCAGTACTTC CASSSPGTSGTYEQYF TRBV11-2*01 TRBJ2-7*01 28.0 1431.0 _CASSSPGTSGTYEQYF 1 7280 BZLF1-190-197 EBV 0.7 2156 NEG 165 7115 8 EBV BZLF1 RAKFKQLL effector memory T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-B*08:01 B2M MHCI -8201 chip0423_778992 11.76 7.45 Chip2 T1D_4 T1D TGTGCCAGCAGCTTAACGGTTCTGGCAGGTCCAAACACTGAAGCTTTCTTT CASSLTVLAGPNTEAFF TRBV7-3*01 TRBJ1-1*01 62.0 2415.0 _CASSLTVLAGPNTEAFF 32 4936 BZLF1-190-197 EBV 0.91 2156 BZLF1-190-197 178 4758 10 EBV BZLF1 RAKFKQLL effector memory T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-B*08:01 B2M MHCI -8202 chip0423_511369 -2.64 7.34 Chip2 healthy_3 healthy TGTGCTGTGAGTAGGCGGAAGGGGTTACCAGAAAGTTACCTTT CAVSRRK??gGYQKVTF TRAV8-6*01 TRAJ13*01 30.0 2025.0 TGTGCCAGCAGCTTAGAATACGAGCAGTACTTC CASSLEYEQYF TRBV7-2*01 TRBJ2-7*01 10.0 833.0 CAVSRRK??gGYQKVTF_CASSLEYEQYF 1 7560 DUF5119-124-133 DUF5119 0.63 7 DUF5119-124-133 137 7423 2 HomoSapiens DUF5119 MVWGPDPLYV Naive T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*02:01 B2M MHCI -8203 chip0423_579148 -2.54 7.41 Chip2 healthy_3 healthy TGTGCAGCAAGCGGGGGATTTAACACCGACAAGCTCGTCTTT CAASGGFNTDKLVF TRAV29/DV5*01 TRAJ34*01 4.0 101.0 TGTGCCAGCAGCTCCACTAGCGGGAGGGCCGCTGAGCAGTTCTTC CASSSTSGRAAEQFF TRBV13*01 TRBJ2-1*01 50.0 2368.0 CAASGGFNTDKLVF_CASSSTSGRAAEQFF 1 8029 GP160-311-320 HIV 0.4 109 NEG 148 7881 2 HIV-1 GP160 RGPGRAFVTI Naive T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*02:01 B2M MHCI -8204 chip0423_238972 14.12 10.16 Chip2 healthy_3 healthy _ 6746 3175 EBV-BRLF1 EBV 0.65 1264 NEG 140 3035 12 EBV BRLF1 YVLDHLIVV effector T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*02:01 B2M MHCI -8205 chip0423_668896 14.22 9.27 Chip2 T1D_4 T1D TGCATCGTCAGAGAGGGTGGAGGTGCTGTCGGGCTCTCCTTT CIVREGGGAVGLSF TRAV26-1*01 TRAJ45*01 7.0 712.0 TGTGCCAGCAGCTTAGCGGTCGGAGAAGGGCCCCAGCATTTT CASSLAVGEGPQHF TRBV7-9*01 TRBJ1-5*01 21.0 811.0 CIVREGGGAVGLSF_CASSLAVGEGPQHF 1 3285 BZLF1-190-197 EBV 0.56 2156 NEG 180 3105 12 EBV BZLF1 RAKFKQLL effector T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-B*08:01 B2M MHCI -8206 chip0423_607234 11.94 9.88 Chip2 T1D_5 T1D TGTGCCAGCTCCCAGTTGGGGGGGGTTTACAATGAGCAGTTCTTC CASSQLGGVYNEQFF TRBV7-9*01 TRBJ2-1*01 32.0 2084.0 _CASSQLGGVYNEQFF 13 5025 BZLF1-190-197 EBV 0.59 2156 BZLF1-190-197 154 4871 9 EBV BZLF1 RAKFKQLL effector memory T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-B*08:01 B2M MHCI -8207 chip0423_412959 -2.66 7.91 Chip2 T1D_4 T1D TGTGTGGTGAGCGGACGGAGCAACTATCAGTTAATCTGG CVVSGRSNYQLIW TRAV10*01 TRAJ33*01 33.0 2024.0 TGTGCCAGCACTGGAGGAGCGGGGGGGCCGAGGGGCTACAATGAGCAGTTTCTT CASTGGAGGPRGYNEQFL TRBV6-2*01,TRBV6-3*01 TRBJ2-1*01 47.0 2569.0 CVVSGRSNYQLIW_CASTGGAGGPRGYNEQFL 1 5268 ZNT8-YAY-8 ZNT8 0.75 54 ZNT8-YAY-8 158 5110 2 HomoSapiens ZNT8 YAYAKWKL Naive T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-B*08:01 B2M MHCI -8208 chip0423_496143 14.63 8.2 Chip2 T1D_5 T1D TGTGCTGTGCGCGTCGACTATGGTCTGCATTTTGTCTTT CAVRVDYGLHFVF TRAV3*01 TRAJ26*01 20.0 1091.0 CAVRVDYGLHFVF_ 1 3917 BZLF1-190-197 EBV 0.95 2156 BZLF1-190-197 204 3713 12 EBV BZLF1 RAKFKQLL effector T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-B*08:01 B2M MHCI -8209 chip0423_131091 6.25 14.22 Chip2 healthy_3 healthy TGTGCCCCTGCATCAGGAGGAAACTACATACCTACATTT CAPASGGNYIPTF TRAV24*01 TRAJ6*01 5.0 327.0 TGTGCCAGCTGCCGGGACGGGACCTACGAGCAGTACTTC CASCRDGTYEQYF TRBV10-3*01 TRBJ2-7*01 28.0 1528.0 CAPASGGNYIPTF_CASCRDGTYEQYF 1 6879 NP44-52 FLU 0.78 474 NP44-52 161 6718 7 InfluenzaA NP CTELKLSDY transitional T cells between effector and memory populations PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*01:01 B2M MHCI -8210 chip0423_17317 11.78 12.95 Chip2 T1D_4 T1D TGTGCTGTGAGTGATGGAGAAGGCGCCCAGAAGCTGGTATTT CAVSDGEGAQKLVF TRAV8-6*01 TRAJ54*01 45.0 1997.0 TGTGCCAGCAGCTTAACGGTTCTGGCAGGTCCAAACACTGAAGCTTTCTTT CASSLTVLAGPNTEAFF TRBV7-3*01 TRBJ1-1*01 122.0 4467.0 CAVSDGEGAQKLVF_CASSLTVLAGPNTEAFF 44 2206 BZLF1-190-197 EBV 0.91 2156 BZLF1-190-197 149 2057 11 EBV BZLF1 RAKFKQLL effector T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-B*08:01 B2M MHCI -8211 chip0423_365215 5.18 11.37 Chip2 T1D_6 T1D TGCGCCAGCAGTGACATTAGGGAGGGGCAGGGTGAAGCTTTCTTT CASSDIREGQGEAFF TRBV10-2*01 TRBJ1-1*01 2.0 33.0 _CASSDIREGQGEAFF 37 5343 EBNA3A-158-166 EBV 1.0 444 NEG 159 5184 6 EBV EBNA3A QAKWRLQTL central memory T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-B*08:01 B2M MHCI -8212 chip0423_186912 10.95 11.62 Chip2 T1D_5 T1D _ 6746 3745 BZLF1-190-197 EBV 0.5 2156 NEG 143 3602 9 EBV BZLF1 RAKFKQLL effector memory T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-B*08:01 B2M MHCI -8213 chip0423_178357 14.7 12.5 Chip2 T1D_5 T1D TGCATCCTGAGAGACTTACGGGTCTGCACTCAACTTC CILRDL??cGSALNF TRAV26-2*01 TRAJ41*01 20.0 1439.0 TGTGCCAGCAGCCAATTGGGGGAGGCGAAGGAAGGCACTGAAGCTTTCTTT CASSQLGEAKEGTEAFF TRBV11-1*01 TRBJ1-1*01 56.0 1392.0 CILRDL??cGSALNF_CASSQLGEAKEGTEAFF 1 2464 BZLF1-190-197 EBV 0.44 2156 NEG 153 2311 12 EBV BZLF1 RAKFKQLL effector T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-B*08:01 B2M MHCI -8214 chip0423_173684 6.38 11.54 Chip2 T1D_6 T1D TGCGCCAGCAGTGACATTAGGGAGGGGCAGGGTGAAGCTTTCTTT CASSDIREGQGEAFF TRBV10-2*01 TRBJ1-1*01 28.0 1473.0 _CASSDIREGQGEAFF 37 8491 EBNA3A-158-166 EBV 0.86 444 NEG 144 8347 7 EBV EBNA3A QAKWRLQTL transitional T cells between effector and memory populations PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-B*08:01 B2M MHCI -8215 chip0423_97117 10.48 10.22 Chip2 T1D_4 T1D TGTGCTACGGAGGGGGCTTCAGGATACAGCACCCTCACCTTT CATEGASGYSTLTF TRAV17*01 TRAJ11*01 75.0 3048.0 TGTGCCAGCAGTCCGCAGGGAGGGAACTATGGCTACACCTTC CASSPQGGNYGYTF TRBV6-1*01 TRBJ1-2*01 1.0 41.0 CATEGASGYSTLTF_CASSPQGGNYGYTF 1 5970 EBV-LMP2-FLY EBV 0.71 355 NEG 158 5812 9 EBV LMP2 FLYALALLL effector memory T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*02:01 B2M MHCI -8216 chip0423_788762 14.84 12.15 Chip2 T1D_5 T1D TGCAGCGTTGGAACAAGCTATGGCTACACCTTC CSVGTSYGYTF TRBV29-1*01 TRBJ1-2*01 86.0 8243.0 _CSVGTSYGYTF 6 1957 BZLF1-190-197 EBV 1.0 2156 NEG 141 1816 12 EBV BZLF1 RAKFKQLL effector T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-B*08:01 B2M MHCI -8217 chip0423_510710 12.35 10.72 Chip2 T1D_4 T1D TGTGCCGGCAGCCACGTCAGCACCCCGGGGGGTGGCTACACCTTC CAGSHVSTPGGGYTF TRBV14*01 TRBJ1-2*01 2.0 168.0 _CAGSHVSTPGGGYTF 1 3938 EBNA3A-158-166 EBV 0.55 444 EBNA3A-158-166 167 3771 9 EBV EBNA3A QAKWRLQTL effector memory T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-B*08:01 B2M MHCI -8218 chip0423_23737 -2.13 9.33 Chip2 T1D_5 T1D TGTGCAGAGAATAGCTCCGGGTATGCACTCAACTTC CAENSSGYALNF TRAV13-2*01 TRAJ41*01 37.0 2569.0 TGCGCCAGCAGACAAGGACCCAGCTCCTACAATGAGCAGTTCTTC CASRQGPSSYNEQFF TRBV4-1*01 TRBJ2-1*01 44.0 2779.0 CAENSSGYALNF_CASRQGPSSYNEQFF 1 7285 INS-MAL-8 INS 0.59 38 INS-MAL-8 141 7144 3 HomoSapiens INS MALWMRLL Naive T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-B*08:01 B2M MHCI -8219 chip0423_750452 0.29 8.59 Chip2 T1D_6 T1D TGTGCCTTTGGTGGCTACAATAAGCTGATTTTT CAFGGYNKLIF TRAV24*01 TRAJ4*01 12.0 1383.0 TGTGCCAGCAGACAAGAAATGAACACTGAAGCTTTCTTT CASRQEMNTEAFF TRBV6-1*01 TRBJ1-1*01 11.0 220.0 CAFGGYNKLIF_CASRQEMNTEAFF 1 8483 M1 FLU 0.61 1250 M1 156 8327 4 InfluenzaA M1 GILGFVFTL Naive T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*02:01 B2M MHCI -8220 chip0423_333918 -3.15 10.83 Chip2 T1D_6 T1D TCTGCTGGGGCAAACAACCTCTTCTTT SAGANNLFF TRAV12-2*01 TRAJ36*01 2.0 37.0 TGTGCCAGCAGCTTAAGTTCAAATGAAAAACTGTTTTTT CASSLSSNEKLFF TRBV7-9*01 TRBJ1-4*01 31.0 1075.0 SAGANNLFF_CASSLSSNEKLFF 1 4545 GAD65-141-149 GAD65 0.45 9 NEG 140 4405 4 HomoSapiens GAD65 LLQEYNWEL Naive T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*02:01 B2M MHCI -8221 chip0423_125802 6.0 13.58 Chip2 healthy_3 healthy TGTGCTGTGTGGTTCTCCTAATTATGGAGGAAGCCAAGGAAATCTCATCTTT CAVWFS*Ltg??gaGSQGNLIF TRAV36/DV7*01 TRAJ42*01 64.0 1119.0 CAVWFS*Ltg??gaGSQGNLIF_ 1 6331 NP44-52 FLU 0.72 474 NP44-52 138 6193 7 InfluenzaA NP CTELKLSDY transitional T cells between effector and memory populations PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*01:01 B2M MHCI -8222 chip0423_876620 10.96 7.56 Chip2 T1D_5 T1D TGTGCCAGCAGCTCCGGACTAGCGGGGGGCTCTCACACCGGGGAGCTGTTTTTT CASSSGLAGGSHTGELFF TRBV11-1*01 TRBJ2-2*01 37.0 1661.0 _CASSSGLAGGSHTGELFF 14 6408 BZLF1-190-197 EBV 0.72 2156 NEG 149 6259 10 EBV BZLF1 RAKFKQLL effector memory T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-B*08:01 B2M MHCI -8223 chip0423_659381 -1.47 7.48 Chip2 T1D_4 T1D TGTGCTGCGGGCGCAGCCGGTGCCCTGCGCTGT CAAGAAGALRC TRAV17*01 TRAJ43*01 4.0 388.0 TGTGCCAGCAGTTACACACTCAATTCACCCCTCCACTTT CASSYTLNSPLHF TRBV12-3*01,TRBV12-4*01 TRBJ1-6*01 39.0 1862.0 CAAGAAGALRC_CASSYTLNSPLHF 1 9121 MART1-A28L MART1 0.57 84 NEG 162 8959 3 HomoSapiens MART1 ALGIGILTV Naive T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*02:01 B2M MHCI -8224 chip0423_1503 7.48 9.87 Chip2 healthy_3 healthy _ 6746 5585 M1 FLU 0.61 1250 M1 161 5424 7 InfluenzaA M1 GILGFVFTL transitional T cells between effector and memory populations PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*02:01 B2M MHCI -8225 chip0423_732973 9.31 8.98 Chip2 T1D_5 T1D _ 6746 5326 BZLF1-190-197 EBV 0.66 2156 BZLF1-190-197 179 5147 8 EBV BZLF1 RAKFKQLL effector memory T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-B*08:01 B2M MHCI -8226 chip0423_611052 6.7 10.61 Chip2 T1D_4 T1D TGTGCTCTCACTACCTATGGTCAGGATTTTGTCTTT CALTTYGQDFVF TRAV38-1*01 TRAJ26*01 2.0 189.0 TGCAGTGCCTCTCGTGACTCCTACGAGCAGTACTTC CSASRDSYEQYF TRBV20-1*01 TRBJ2-7*01 4.0 352.0 CALTTYGQDFVF_CSASRDSYEQYF 1 7598 EBV-LMP1-1 EBV 0.72 237 EBV-LMP1-1 185 7413 7 EBV LMP1 YLLEMLWRL transitional T cells between effector and memory populations PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*02:01 B2M MHCI -8227 chip0423_460907 -3.48 10.51 Chip2 T1D_4 T1D TGTGTGGTGAACAACCTGGACACGGGCAGGAGAGCACTTACTTTT CVVNNLDTGRRALTF TRAV12-1*01 TRAJ5*01 55.0 1985.0 TGTGCCAGCAGTGATCCCCGGGGTAGCACAGATACGCAGTATTTT CASSDPRGSTDTQYF TRBV2*01 TRBJ2-3*01 51.0 1493.0 CVVNNLDTGRRALTF_CASSDPRGSTDTQYF 1 4020 IGRP-265-273 IGRP 0.52 34 NEG 143 3877 2 HomoSapiens IGRP VLFGLGFAI Naive T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*02:01 B2M MHCI -8228 chip0423_849691 4.82 11.58 Chip2 T1D_6 T1D TGTGCAATGAGCGGATCCTCTGGTTCTGCAAGGCAACTGACCTTT CAMSGSSGSARQLTF TRAV12-3*01 TRAJ22*01 74.0 4004.0 TGTGCCACCAGTGATTTGCGAACAGCGAACACCGGGGAGCTGTTTTTT CATSDLRTANTGELFF TRBV24-1*01 TRBJ2-2*01 40.0 1588.0 CAMSGSSGSARQLTF_CATSDLRTANTGELFF 1 4739 INS-GSH-9 INS 0.82 19 NEG 151 4588 6 HomoSapiens INS GSHLVEALY central memory T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*01:01 B2M MHCI -8229 chip0423_455252 6.59 11.74 Chip2 healthy_3 healthy _ 6746 7778 IAPP-STN-9 IAPP 0.7 48 IAPP-STN-9 127 7651 7 HomoSapiens IAPP STNVGSNTY transitional T cells between effector and memory populations PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*01:01 B2M MHCI -8230 chip0423_154607 -3.75 8.32 Chip2 T1D_6 T1D TGTGCCGTGAACCCTCTCCGAGTTGGAAATCTCATCTTT CAVNPLRVGNLIF TRAV12-2*01 TRAJ42*01 62.0 4259.0 TGTGCCAGCAGCTTAGTAGGAGAGTCAGGGGGCGAAGGCTACACCTTC CASSLVGESGGEGYTF TRBV11-2*01 TRBJ1-2*01 1.0 32.0 CAVNPLRVGNLIF_CASSLVGESGGEGYTF 1 4818 PGT-178 PGT 0.7 1480 NEG 160 4658 2 HomoSapiens PGT LLAGIGTVPI Naive T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*02:01 B2M MHCI -8231 chip0423_121489 9.97 10.33 Chip2 T1D_5 T1D TGTGCAGCGGGCGGAAACCTCCTACGACAAGGTGATATCT CAAGGNct??ccYDKVIS TRAV13-1*01 TRAJ50*01 1.0 179.0 TGTGCCAGCCAACTAGCGGGAGGCACCGGGGAGCTGTTTTTT CASQLAGGTGELFF TRBV24-1*01 TRBJ2-2*01 5.0 182.0 CAAGGNct??ccYDKVIS_CASQLAGGTGELFF 1 4018 BZLF1-190-197 EBV 0.56 2156 BZLF1-190-197 163 3855 9 EBV BZLF1 RAKFKQLL effector memory T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-B*08:01 B2M MHCI -8232 chip0423_607776 11.76 7.95 Chip2 T1D_4 T1D TGCATCGTCAGAGAGGGCGGCGGTGCTGCCGGCCTCCCCTTT CIVREGGGAAGLPF TRAV26-1*01 TRAJ45*01 30.0 1988.0 TGTGCCAGCAGCTTAGCGGTCGGAGAAGGGCCCCAGCATTTT CASSLAVGEGPQHF TRBV7-9*01 TRBJ1-5*01 65.0 2649.0 CIVREGGGAAGLPF_CASSLAVGEGPQHF 4 4111 BZLF1-190-197 EBV 0.97 2156 BZLF1-190-197 147 3964 10 EBV BZLF1 RAKFKQLL effector memory T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-B*08:01 B2M MHCI -8233 chip0423_485289 -2.19 11.7 Chip2 healthy_4 healthy _ 6746 4181 PGT-178 PGT 0.75 1480 PGT-178 148 4033 4 HomoSapiens PGT LLAGIGTVPI Naive T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*02:01 B2M MHCI -8234 chip0423_421931 -3.87 12.69 Chip2 T1D_6 T1D TGTGCCAGCAGCCAAGACAGGGTTAAGAATGAGCAGTTCTTC CASSQDRVKNEQFF TRBV14*01 TRBJ2-1*01 30.0 686.0 _CASSQDRVKNEQFF 1 4523 IAPP-ILK-8 IAPP 0.84 20 IAPP-ILK-8 156 4367 1 HomoSapiens IAPP ILKLQVFL Naive T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-B*08:01 B2M MHCI -8235 chip0423_322108 -1.06 7.78 Chip2 T1D_6 T1D _ 6746 6355 PGT-178 PGT 0.67 1480 NEG 143 6212 3 HomoSapiens PGT LLAGIGTVPI Naive T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*02:01 B2M MHCI -8236 chip0423_112420 11.09 6.62 Chip2 T1D_5 T1D TGTGCAGCAAGTGAAACCTCCTACGACAAGGTGATATTT CAASETSYDKVIF TRAV13-1*01 TRAJ50*01 9.0 603.0 TGTGCCAGCAGCTTAGCACAGGTTTTCAATGGCTACACCTTC CASSLAQVFNGYTF TRBV7-9*01 TRBJ1-2*01 22.0 905.0 CAASETSYDKVIF_CASSLAQVFNGYTF 1 6746 BZLF1-190-197 EBV 0.58 2156 NEG 160 6586 10 EBV BZLF1 RAKFKQLL effector memory T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-B*08:01 B2M MHCI -8237 chip0423_863110 6.77 12.23 Chip2 healthy_3 healthy TGCATCCTGGTCTGGTTCTGCGTGGCCCCTGACCTTT CILVWF??tAWPLTF TRAV26-2*01 TRAJ22*01 10.0 899.0 TGTGCCAGCAGCGAGGAGGACGGGCCCCAGCATTTT CASSEEDGPQHF TRBV9*01 TRBJ1-5*01 4.0 139.0 CILVWF??tAWPLTF_CASSEEDGPQHF 1 6770 NP44-52 FLU 0.81 474 NP44-52 144 6626 7 InfluenzaA NP CTELKLSDY transitional T cells between effector and memory populations PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*01:01 B2M MHCI -8238 chip0423_819831 11.32 7.85 Chip2 T1D_5 T1D TGTGCCCGCCGCTTCGTGGTGGCTAGCGGGCGGAGATACGCAGTATTTT CARRFVVA??aAGGDTQYF TRBV7-9*01 TRBJ2-3*01 17.0 1045.0 _CARRFVVA??aAGGDTQYF 1 3224 BZLF1-190-197 EBV 0.9 2156 BZLF1-190-197 153 3071 10 EBV BZLF1 RAKFKQLL effector memory T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-B*08:01 B2M MHCI -8239 chip0423_280957 13.07 8.28 Chip2 T1D_5 T1D TGTGCAGCAACGGAAACCTCCTACGACAAGGTGATATTT CAATETSYDKVIF TRAV13-1*01 TRAJ50*01 3.0 153.0 TGTGCCAGCAGTCCCCCGGGGAGAAATGAAAAACTGTTTTTT CASSPPGRNEKLFF TRAV9-2*01 TRAJ5*01 3.0 10.0 0.43 TGTGCCAGCAGTCCCCCGGGGAGAAATGAAAAACTGTTTTTT CASSPPGRNEKLFF TRBV12-3*01,TRBV12-4*01 TRBJ1-4*01 63.0 3266.0 CAATETSYDKVIF_CASSPPGRNEKLFF 34 1959 BZLF1-190-197 EBV 0.69 2156 NEG 142 1817 10 EBV BZLF1 RAKFKQLL effector memory T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-B*08:01 B2M MHCI -8240 chip0423_864059 8.2 11.25 Chip2 healthy_4 healthy _ 6746 5074 BZLF1-190-197 EBV 1.0 2156 NEG 148 4926 7 EBV BZLF1 RAKFKQLL transitional T cells between effector and memory populations PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-B*08:01 B2M MHCI -8241 chip0423_646399 6.12 13.94 Chip2 healthy_3 healthy _ 6746 4926 NP44-52 FLU 0.58 474 NP44-52 120 4806 7 InfluenzaA NP CTELKLSDY transitional T cells between effector and memory populations PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*01:01 B2M MHCI -8242 chip0423_585278 -2.15 12.42 Chip2 T1D_6 T1D TGTGCTACGGACGCGCCGGGGAACAACAGACTCGCTTTT CATDAPGNNRLAF TRAV17*01 TRAJ7*01 1.0 44.0 CATDAPGNNRLAF_ 1 5268 LMP2A-CPL EBV 0.57 44 NEG 154 5114 1 EBV LMP2A CPLSKILL Naive T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-B*08:01 B2M MHCI -8243 chip0423_7106 -1.96 12.13 Chip2 T1D_4 T1D TGTGCCAGCAGCTTAGATGGTAGCGGGAGCTACGAGCAGTACTTT CASSLDGSGSYEQYF TRBV7-3*01 TRBJ2-7*01 8.0 255.0 _CASSLDGSGSYEQYF 1 3852 IAPP-STN-9 IAPP 0.68 48 IAPP-STN-9 150 3702 3 HomoSapiens IAPP STNVGSNTY Naive T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*01:01 B2M MHCI -8244 chip0423_787451 14.3 8.95 Chip2 T1D_4 T1D TGTCCTGTGGGTGATGGAGAAGGAGCCCAGAAGCTGGTATTC CPVGDGEGAQKLVF TRAV8-6*01 TRAJ54*01 36.0 2053.0 TGTGCCAGCAGCTTAACGGTTCTGGCAGGTCCAAACACTGAAGCTTTCTTT CASSLTVLAGPNTEAFF TRBV7-3*01 TRBJ1-1*01 149.0 4055.0 CPVGDGEGAQKLVF_CASSLTVLAGPNTEAFF 1 5747 BZLF1-190-197 EBV 0.74 2156 BZLF1-190-197 170 5577 12 EBV BZLF1 RAKFKQLL effector T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-B*08:01 B2M MHCI -8245 chip0423_734396 -0.9 9.87 Chip2 T1D_6 T1D TGCGCCAGCAGCTTAGGGGACAGCAATCAGCCCCAGCATTTT CASSLGDSNQPQHF TRBV5-1*01 TRBJ1-5*01 98.0 2949.0 _CASSLGDSNQPQHF 1 7726 ZNT8-107-115 ZNT8 0.63 10 NEG 169 7557 3 HomoSapiens ZNT8 LLIDLTSFL Naive T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*02:01 B2M MHCI -8246 chip0423_635629 13.89 10.82 Chip2 T1D_5 T1D TGTGCTCTGAGTGAAACCTCCTACGACAAGGTGATATTT CALSETSYDKVIF TRAV9-2*01 TRAJ50*01 17.0 869.0 TGTGCCAGCAGCCCAACGACAGGGAAGAGCTCCTATAATTCACCCCTCCACTTT CASSPTTGKSSYNSPLHF TRBV11-1*01 TRBJ1-6*01 27.0 552.0 CALSETSYDKVIF_CASSPTTGKSSYNSPLHF 1 3444 BZLF1-190-197 EBV 0.64 2156 NEG 174 3270 12 EBV BZLF1 RAKFKQLL effector T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-B*08:01 B2M MHCI -8247 chip0423_509043 -0.71 8.94 Chip2 healthy_4 healthy TGCAATGCTAGCGACGGTGACAGGGGAATTTACGAGCAGTACTTC CNASDGDRGIYEQYF TRBV20-1*01 TRBJ2-7*01 12.0 474.0 _CNASDGDRGIYEQYF 1 7970 PGT-178 PGT 0.69 1480 PGT-178 169 7801 3 HomoSapiens PGT LLAGIGTVPI Naive T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*02:01 B2M MHCI -8248 chip0423_502314 8.65 8.72 Chip2 T1D_5 T1D TGTGCAATGAGGGAATAATGCAGGCAACATGCTCACCTTT CAMRE*tg??caGNMLTF TRAV12-3*01 TRAJ39*01 1.0 91.0 TGTGCCAGCAGTTGAGGGGAAGGCGGGTACACTGAAGCTTTCTTT CASS*GEGGYTEAFF TRAV9-1*01,TRAV8-1*01 TRAJ40*01 3.0 8.0 0.75 TGTGCCAGCAGTGGTGGGGGAGGCGGGTACACTGGAGCTTTCTTT CASSGGGGGYTGAFF TRBV12-3*01,TRBV12-4*01 TRBJ1-1*01 114.0 3360.0 CAMRE*tg??caGNMLTF_CASSGGGGGYTGAFF 1 7050 BZLF1-190-197 EBV 0.47 2156 NEG 145 6905 8 EBV BZLF1 RAKFKQLL effector memory T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-B*08:01 B2M MHCI -8249 chip0423_753741 14.75 8.2 Chip2 T1D_5 T1D TGTGCAGCAAGTGAAACCTCCTACGACAAGGTGATATTT CAASETSYDKVIF TRAV13-1*01 TRAJ50*01 26.0 2011.0 TGCAGCGTTGCACAGGGTTCGTTCGGCTACACCTTC CSVAQGSFGYTF TRBV29-1*01 TRBJ1-2*01 97.0 7658.0 CAASETSYDKVIF_CSVAQGSFGYTF 2 3982 BZLF1-190-197 EBV 0.88 2156 NEG 176 3806 12 EBV BZLF1 RAKFKQLL effector T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-B*08:01 B2M MHCI -8250 chip0423_702634 15.08 9.39 Chip2 T1D_4 T1D TGTGCCAGCAGCTTAGCGGTCGGAGAAGGGCCCCAGCATTTT CASSLAVGEGPQHF TRBV7-9*01 TRBJ1-5*01 9.0 288.0 _CASSLAVGEGPQHF 113 4312 BZLF1-190-197 EBV 1.0 2156 BZLF1-190-197 158 4154 12 EBV BZLF1 RAKFKQLL effector T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-B*08:01 B2M MHCI -8251 chip0423_38175 9.09 7.73 Chip2 T1D_5 T1D _ 6746 5663 BZLF1-190-197 EBV 0.89 2156 BZLF1-190-197 148 5515 8 EBV BZLF1 RAKFKQLL effector memory T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-B*08:01 B2M MHCI -8252 chip0423_828866 6.5 10.06 Chip2 T1D_6 T1D TGCGCCAGCAGTGACATTAGGGAGGGGCAGGGTGAAGCTTCCTTT CASSDIREGQGEASF TRBV10-2*01 TRBJ1-1*01 26.0 1016.0 _CASSDIREGQGEASF 1 10466 EBNA3A-158-166 EBV 0.87 444 EBNA3A-158-166 165 10301 6 EBV EBNA3A QAKWRLQTL central memory T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-B*08:01 B2M MHCI -8253 chip0423_689269 10.04 8.28 Chip2 T1D_4 T1D TGTGCCAGCAGCTTAGCGGTCGGAGAAGGGCCCCAGCATTTT CASSLAVGEGPQHF TRBV7-9*01 TRBJ1-5*01 26.0 922.0 _CASSLAVGEGPQHF 113 5192 BZLF1-190-197 EBV 0.92 2156 BZLF1-190-197 155 5037 8 EBV BZLF1 RAKFKQLL effector memory T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-B*08:01 B2M MHCI -8254 chip0423_670203 9.67 10.22 Chip2 T1D_4 T1D _ 6746 4052 BZLF1-190-197 EBV 0.8 2156 BZLF1-190-197 173 3879 9 EBV BZLF1 RAKFKQLL effector memory T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-B*08:01 B2M MHCI -8255 chip0423_651997 9.27 9.55 Chip2 T1D_5 T1D TGTGCCAGCAGTCCAACCCCTCCTCCGGTCAATCAGCCCCAGCATTTT CASSPTPPPVNQPQHF TRBV27*01 TRBJ1-5*01 53.0 1578.0 _CASSPTPPPVNQPQHF 1 5895 BZLF1-190-197 EBV 0.91 2156 NEG 145 5750 8 EBV BZLF1 RAKFKQLL effector memory T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-B*08:01 B2M MHCI -8256 chip0423_351482 11.4 10.97 Chip2 T1D_4 T1D TGCATCGTCAGAGCGGGAGGGGGTGCTGTCGGGCTCGCCTTT CIVRAGGGAVGLAF TRAV26-1*01 TRAJ45*01 21.0 1553.0 CIVRAGGGAVGLAF_ 1 4044 BZLF1-190-197 EBV 0.86 2156 BZLF1-190-197 123 3921 9 EBV BZLF1 RAKFKQLL effector memory T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-B*08:01 B2M MHCI -8257 chip0423_263228 8.35 10.38 Chip2 T1D_4 T1D _ 6746 7623 EBV-LMP2A EBV 0.69 700 NEG 156 7467 8 EBV LMP2A CLGGLLTMV effector memory T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*02:01 B2M MHCI -8258 chip0423_135943 5.4 8.98 Chip2 T1D_4 T1D TGCGCCAGCAGTGATGACGGAATGAACACTGAAGCTTTCTTT CASSDDGMNTEAFF TRBV10-2*01 TRBJ1-1*01 41.0 1647.0 _CASSDDGMNTEAFF 8 5346 EBV-LMP2A EBV 0.8 700 NEG 139 5207 6 EBV LMP2A CLGGLLTMV central memory T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*02:01 B2M MHCI -8259 chip0423_623328 6.44 12.71 Chip2 healthy_3 healthy TGTGCCAGCAGTGAACTGTGGGGAGCACCCCTCCACCT CASSELt?gGSTPPP TRAV14/DV4*01 TRAJ11*01 3.0 14.0 TGTGCCAGCAGTGAAATGTGGGGAGCACCCCTCCACTTT CASSEMWGAPLHF TRBV2*01 TRBJ1-6*01 49.0 2653.0 CASSELt?gGSTPPP_CASSEMWGAPLHF 1 8384 NP44-52 FLU 0.89 474 NP44-52 145 8239 7 InfluenzaA NP CTELKLSDY transitional T cells between effector and memory populations PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*01:01 B2M MHCI -8260 chip0423_319440 -3.76 10.3 Chip2 T1D_4 T1D TGTGCCGTTTCACGTGGCTACAATAAGCTGATTTTT CAVSRGYNKLIF TRAV12-2*01 TRAJ4*01 17.0 1874.0 TGCCTCGTGGGTGAAGGGCTCCGGCACCTCCAAATACATCTTT CLVGEGL??cGTSKYIF TRAV4*01 TRAJ40*01 14.0 662.0 0.36 CAVSRGYNKLIF_ 1 6013 PGT-178 PGT 0.82 1480 PGT-178 144 5869 2 HomoSapiens PGT LLAGIGTVPI Naive T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*02:01 B2M MHCI -8261 chip0423_148104 11.56 10.38 Chip2 T1D_4 T1D TGCAGCGTTGGAACGGGGGGAACTAATGAAAAACTGTTTTTT CSVGTGGTNEKLFF TRBV29-1*01 TRBJ1-4*01 72.0 2817.0 _CSVGTGGTNEKLFF 638 4899 EBV-BLMF1 EBV 0.5 2531 NEG 156 4743 9 EBV BLMF1 GLCTLVAML effector memory T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*02:01 B2M MHCI -8262 chip0423_67387 -1.87 7.02 Chip2 T1D_5 T1D TGTGCCAGCAGCTTTTCGGGCTTGGGACAGCCCCAGCATTTT CASSFSGLGQPQHF TRBV5-6*01 TRBJ1-5*01 2.0 54.0 _CASSFSGLGQPQHF 1 9077 ZNT8-VTD-9 ZNT8 0.72 65 ZNT8-VTD-9 140 8937 3 HomoSapiens ZNT8 VTDAAHLLI Naive T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*01:01 B2M MHCI -8263 chip0423_939 -1.96 9.51 Chip2 T1D_5 T1D _ 6746 7262 IAPP-LNH-9 IAPP 0.93 15 IAPP-LNH-9 149 7113 3 HomoSapiens IAPP LNHLKATPI Naive T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-B*08:01 B2M MHCI -8264 chip0423_595840 15.87 10.76 Chip2 T1D_5 T1D TGTGCAGCCTTGGAAACCTCCTACGACAAGGTGATATTT CAALETSYDKVIF TRAV13-1*01 TRAJ50*01 8.0 432.0 CAALETSYDKVIF_ 3 2246 BZLF1-190-197 EBV 0.67 2156 NEG 149 2097 12 EBV BZLF1 RAKFKQLL effector T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-B*08:01 B2M MHCI -8265 chip0423_213238 7.36 10.03 Chip2 T1D_6 T1D _ 6746 8116 EBV-LMP2-FLY EBV 1.0 355 NEG 156 7960 8 EBV LMP2 FLYALALLL effector memory T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*02:01 B2M MHCI -8266 chip0423_492795 14.31 10.53 Chip2 T1D_5 T1D TGTGCGGGGGGAGAAACCTCCTACGACAAGGTGATATTT CAGGETSYDKVIF TRAV13-1*01 TRAJ50*01 41.0 2756.0 TGTGCCAGCAGCTCACTAGGGACAGGGGACACTGAAGCTTTCTTT CASSSLGTGDTEAFF TRBV7-9*01 TRBJ1-1*01 17.0 566.0 CAGGETSYDKVIF_CASSSLGTGDTEAFF 11 3547 BZLF1-190-197 EBV 0.44 2156 NEG 147 3400 12 EBV BZLF1 RAKFKQLL effector T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-B*08:01 B2M MHCI -8267 chip0423_277149 5.62 12.22 Chip2 T1D_4 T1D TGTGCCTGGAGTGTGGGCGTGGGTCAGCCCCAGCATTTT CAWSVGVGQPQHF TRBV30*01 TRBJ1-5*01 40.0 2865.0 _CAWSVGVGQPQHF 1 4867 PGT-178 PGT 0.68 1480 PGT-178 125 4742 7 HomoSapiens PGT LLAGIGTVPI transitional T cells between effector and memory populations PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*02:01 B2M MHCI -8268 chip0423_621328 8.85 13.97 Chip2 healthy_3 healthy TGCAGTGCCCGATTTTTCTCGGACAGGACTGGCTACGAGCAGTACTTC CSARFFSDRTGYEQYF TRBV20-1*01 TRBJ2-7*01 29.0 1809.0 _CSARFFSDRTGYEQYF 1 2561 NP44-52 FLU 0.44 474 NEG 120 2441 11 InfluenzaA NP CTELKLSDY effector T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*01:01 B2M MHCI -8269 chip0423_363790 -4.2 8.3 Chip2 healthy_3 healthy TGTGCCGTGACGAGATCTAACTTTGGAAATGAGAAATTAACCTTT CAVTRSNFGNEKLTF TRAV12-2*01 TRAJ48*01 32.0 1767.0 TGTGCCGGACGAGATCTAACTTTGGAAATGAGAAATTAACCTTT CAGRDLTt?tGNEKLTF TRAV12-2*01 TRAJ48*01 23.0 1321.0 0.33 TGTGCCAGCCGCTTGGTTGTAGCGGGACCCTCGTCATTCAATGAGCAGTTCTTC CASRLVVAGPSSFNEQFF TRBV5-6*01 TRBJ2-1*01 18.0 616.0 CAVTRSNFGNEKLTF_CASRLVVAGPSSFNEQFF 1 6773 PGT-178 PGT 0.62 1480 PGT-178 123 6650 2 HomoSapiens PGT LLAGIGTVPI Naive T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*02:01 B2M MHCI -8270 chip0423_63668 6.75 12.4 Chip2 healthy_3 healthy TGTGCTGGAGCGCGGAGCCCGGCGTATCTCTTCTTT CAGARSPAYLFF TRAV27*01 TRAJ42*01 9.0 367.0 TGTGCCAGTCGTACGAGGAGCTCCTACGAGCAGTGCTTC CASRTRSSYEQCF TRBV19*01 TRBJ2-7*01 4.0 212.0 CAGARSPAYLFF_CASRTRSSYEQCF 1 4705 M1 FLU 0.57 1250 NEG 137 4568 7 InfluenzaA M1 GILGFVFTL transitional T cells between effector and memory populations PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*02:01 B2M MHCI -8271 chip0423_694278 13.1 8.5 Chip2 T1D_4 T1D _ 6746 4456 BZLF1-190-197 EBV 0.96 2156 BZLF1-190-197 166 4290 10 EBV BZLF1 RAKFKQLL effector memory T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-B*08:01 B2M MHCI -8272 chip0423_526445 -4.31 9.1 Chip2 T1D_6 T1D _ 6746 4379 POL-132-140 HIV 0.83 37 NEG 167 4212 2 HIV-1 POL LVGPTPVNI Naive T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*02:01 B2M MHCI -8273 chip0423_214331 5.04 10.41 Chip2 healthy_3 healthy TGTGCCGTGAATCCCGATGCCAGACTCATGTTT CAVNPDARLMF TRAV12-2*01 TRAJ31*01 10.0 875.0 CAVNPDARLMF_ 1 5884 PB1-590-599 FLU 0.83 37 NEG 132 5752 6 InfluenzaA PB1 LVSDGGPNLY central memory T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*01:01 B2M MHCI -8274 chip0423_201151 -1.47 7.93 Chip2 T1D_6 T1D TGTGTTGTGAGCGGAGGAAGCTACATACCTACATTT CVVSGGSYIPTF TRAV8-2*01 TRAJ6*01 27.0 2031.0 TGTGCCAGCAGCTTAAATCAGGGGAACGCGCACACCGGGGAGCTGTTTTTT CASSLNQGNAHTGELFF TRBV7-3*01 TRBJ2-2*01 13.0 287.0 CVVSGGSYIPTF_CASSLNQGNAHTGELFF 1 9234 POL-132-140 HIV 0.59 37 POL-132-140 143 9091 3 HIV-1 POL LVGPTPVNI Naive T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*02:01 B2M MHCI -8275 chip0423_588299 9.17 9.32 Chip2 healthy_4 healthy _ 6746 6544 BZLF1-190-197 EBV 0.89 2156 NEG 152 6392 8 EBV BZLF1 RAKFKQLL effector memory T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-B*08:01 B2M MHCI -8276 chip0423_502717 13.02 9.86 Chip2 T1D_6 T1D TGTGCAGCAGGCCAGTTAGTGGTGTAGGTGCTGACGGGCTCACCTTT CAAGQLVgt?VGADGLTF TRAV23/DV6*01 TRAJ45*01 38.0 1605.0 TCTGCCAGCAGCTTGGGCCCGCCCTACGAGCAGTACTTC SASSLGPPYEQYF TRBV7-8*01 TRBJ2-7*01 2.0 87.0 CAAGQLVgt?VGADGLTF_SASSLGPPYEQYF 1 3373 EBNA3A-193-201 EBV 0.86 1022 NEG 163 3210 10 EBV EBNA3A FLRGRAYGL effector memory T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-B*08:01 B2M MHCI -8277 chip0423_427852 11.4 7.53 Chip2 T1D_4 T1D TGTGCTGTCAATTCAGGAAACACACCTCTTGTCTTT CAVNSGNTPLVF TRAV1-2*01 TRAJ29*01 2.0 32.0 TGTGCCAGCAGCCAAGTCAACAACCCGGGGGATGGCTACACCTTC CASSQVNNPGDGYTF TRBV14*01 TRBJ1-2*01 4.0 129.0 CAVNSGNTPLVF_CASSQVNNPGDGYTF 31 3590 EBNA3A-158-166 EBV 0.85 444 NEG 152 3438 10 EBV EBNA3A QAKWRLQTL effector memory T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-B*08:01 B2M MHCI -8278 chip0423_723577 15.06 8.83 Chip2 T1D_6 T1D TGCATCCTCCCACTTGCTGGTGGTACTAGCTATGGAAAGCTGACATTT CILPLAGGTSYGKLTF TRAV26-2*01 TRAJ52*01 23.0 1482.0 TGTGCCAGCAGCTTGGGACAGGCCTACGAGCAGTACTTC CASSLGQAYEQYF TRBV7-8*01 TRBJ2-7*01 2.0 66.0 CILPLAGGTSYGKLTF_CASSLGQAYEQYF 308 3139 EBNA3A-193-201 EBV 0.84 1022 EBNA3A-193-201 164 2975 12 EBV EBNA3A FLRGRAYGL effector T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-B*08:01 B2M MHCI -8279 chip0423_471255 -3.81 11.03 Chip2 healthy_3 healthy TGTGCCGTGCGGCACACAGGCAAACTAATCTTT CAVRHTGKLIF TRAV8-1*01 TRAJ37*01 4.0 233.0 TGTGCCAGCAGCCAAGGATTAGGCAATGAGCAGTTCTTC CASSQGLGNEQFF TRBV3-1*01 TRBJ2-1*01 49.0 3160.0 CAVRHTGKLIF_CASSQGLGNEQFF 1 5815 EBV-BRLF1 EBV 0.6 1264 NEG 119 5696 2 EBV BRLF1 YVLDHLIVV Naive T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*02:01 B2M MHCI -8280 chip0423_412344 7.08 12.91 Chip2 T1D_6 T1D TGTGCCAGCAGCTTAGCGGGTCGTGAGGGTACGCAGTATTTT CASSLAGREGTQYF TRBV11-3*01,TRBV11-2*01 TRBJ2-3*01 8.0 418.0 _CASSLAGREGTQYF 13 4648 NP380-388 FLU 0.83 60 NP380-388 174 4474 7 InfluenzaA NP ELRSRYWAI transitional T cells between effector and memory populations PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-B*08:01 B2M MHCI -8281 chip0423_375994 9.63 10.32 Chip2 healthy_4 healthy TGTGCAGCAAGTGAAACCTCCTACGACAAGGTGATATTT CAASETSYDKVIF TRAV13-1*01 TRAJ50*01 33.0 1882.0 CAASETSYDKVIF_ 51 5264 BZLF1-190-197 EBV 1.0 2156 NEG 155 5109 9 EBV BZLF1 RAKFKQLL effector memory T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-B*08:01 B2M MHCI -8282 chip0423_127253 9.76 9.92 Chip2 T1D_4 T1D TGTGCCAGCAGCCCAGTCAACAACCCGGGGGGTGGCGACGCCTTC CASSPVNNPGGGDAF TRBV14*01 TRBJ1-2*01 2.0 89.0 _CASSPVNNPGGGDAF 1 5429 EBNA3A-158-166 EBV 0.77 444 EBNA3A-158-166 192 5237 9 EBV EBNA3A QAKWRLQTL effector memory T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-B*08:01 B2M MHCI -8283 chip0423_495020 -0.71 10.56 Chip2 T1D_5 T1D TGTGCTGGCCCAAGGATCGACCAGGGAGGAAAGCTTATCTTC CAGPRIDQGGKLIF TRAV12-3*01 TRAJ23*01 18.0 1096.0 TGTGCCAGCAGTTACGTACGGAACACTGAAGCTTTCTTT CASSYVRNTEAFF TRBV6-2*01,TRBV6-3*01 TRBJ1-1*01 27.0 872.0 CAGPRIDQGGKLIF_CASSYVRNTEAFF 1 4508 GFAP-EIR-9 GFAP 0.75 2 NEG 162 4346 3 HomoSapiens GFAP EIRTQYEAM Naive T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-B*08:01 B2M MHCI -8284 chip0423_326640 11.95 7.91 Chip2 healthy_4 healthy TGTGCCAGCAGCTCCGGACAGGCCTACGAGCAGTACTTC CASSSGQAYEQYF TRBV7-8*01 TRBJ2-7*01 34.0 2248.0 _CASSSGQAYEQYF 49 4036 EBNA3A-193-201 EBV 0.86 1022 NEG 161 3875 10 EBV EBNA3A FLRGRAYGL effector memory T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-B*08:01 B2M MHCI -8285 chip0423_845463 5.67 12.17 Chip2 healthy_3 healthy TGTGCAGGGAACTATGGAGGAAGCCAAGGAAATCTCATCTTT CAGNYGGSQGNLIF TRAV25*01 TRAJ42*01 72.0 4217.0 TGTGCCAGTAGTTTGCGGAGCACCGGGGAGCTGTTTTTT CASSLRSTGELFF TRBV19*01 TRBJ2-2*01 32.0 1785.0 CAGNYGGSQGNLIF_CASSLRSTGELFF 2 6740 M1 FLU 0.8 1250 NEG 137 6603 7 InfluenzaA M1 GILGFVFTL transitional T cells between effector and memory populations PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*02:01 B2M MHCI -8286 chip0423_610471 -3.43 8.74 Chip2 T1D_5 T1D TGTGCCAGCAGTACCCGGGCTAGGTGGGATACGCAGTATTTT CASSTRARWDTQYF TRBV6-1*01 TRBJ2-3*01 34.0 1674.0 _CASSTRARWDTQYF 1 7557 INS-MAL-8 INS 0.85 38 NEG 140 7417 2 HomoSapiens INS MALWMRLL Naive T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-B*08:01 B2M MHCI -8287 chip0423_394014 11.05 7.65 Chip2 T1D_5 T1D TGCAGCGTCGGGACAGCCGATGGCTACACCTTC CSVGTADGYTF TRBV29-1*01 TRBJ1-2*01 47.0 4910.0 _CSVGTADGYTF 4 4764 BZLF1-190-197 EBV 0.83 2156 BZLF1-190-197 151 4613 10 EBV BZLF1 RAKFKQLL effector memory T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-B*08:01 B2M MHCI -8288 chip0423_424919 16.24 11.39 Chip2 healthy_3 healthy TGTGCCCTCACTGACAGCTGGGGGAAATTGCAGTTT CALTDSWGKLQF TRAV12-2*01 TRAJ24*01 6.0 457.0 CALTDSWGKLQF_ 7 2558 GAD65-114-122 GAD65 0.52 63 GAD65-114-122 168 2390 12 HomoSapiens GAD65 VMNILLQYV effector T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*02:01 B2M MHCI -8289 chip0423_302601 14.92 9.47 Chip2 T1D_6 T1D TGCAGCGCCGGCAGGGACGGGACTAATGAAAAACTGTTTTTT CSAGRDGTNEKLFF TRBV29-1*01 TRBJ1-4*01 41.0 2298.0 _CSAGRDGTNEKLFF 159 4926 EBV-BLMF1 EBV 0.86 2531 NEG 161 4765 12 EBV BLMF1 GLCTLVAML effector T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*02:01 B2M MHCI -8290 chip0423_670803 6.93 12.6 Chip2 T1D_5 T1D TGTGCCAGTAGTTCAAGCTCCTACAATGAGCAGTTCTTC CASSSSSYNEQFF TRBV19*01 TRBJ2-1*01 2.0 81.0 _CASSSSSYNEQFF 1 5385 NP44-52 FLU 0.91 474 NP44-52 159 5226 7 InfluenzaA NP CTELKLSDY transitional T cells between effector and memory populations PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*01:01 B2M MHCI -8291 chip0423_526307 5.08 12.04 Chip2 healthy_4 healthy TGTGCCAGCAACACCGGGACAGGCTTGGGGGAGCAGTTCTTC CASNTGTGLGEQFF TRBV25-1*01 TRBJ2-1*01 55.0 3099.0 _CASNTGTGLGEQFF 4 4182 M1 FLU 0.56 1250 NEG 179 4003 6 InfluenzaA M1 GILGFVFTL central memory T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*02:01 B2M MHCI -8292 chip0423_883970 -1.98 11.69 Chip2 T1D_4 T1D TGTGCCGTGCAGAATGACATGCGCTTT CAVQNDMRF TRAV12-2*01 TRAJ43*01 1.0 216.0 CAVQNDMRF_ 1 4420 ZNT8-293-300 ZNT8 0.68 17 NEG 124 4296 3 HomoSapiens ZNT8 LAVDGVLSV Naive T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*02:01 B2M MHCI -8293 chip0423_500582 0.65 8.67 Chip2 T1D_6 T1D TGTGCCAGTAGTGTTTTGGGATGGGGGGCCCGGCACACTGAAGCTTTCTTT CASSVLGWGARHTEAFF TRBV19*01 TRBJ1-1*01 27.0 494.0 _CASSVLGWGARHTEAFF 1 8702 ZNT8-273-282 ZNT8 0.59 8 NEG 146 8556 4 HomoSapiens ZNT8 LLMEGVPKSL Naive T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*02:01 B2M MHCI -8294 chip0423_576257 11.03 9.05 Chip2 healthy_4 healthy _ 6746 3460 EBV-BRLF1 EBV 0.93 1264 EBV-BRLF1 139 3321 9 EBV BRLF1 YVLDHLIVV effector memory T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*02:01 B2M MHCI -8295 chip0423_447785 14.64 12.1 Chip2 T1D_5 T1D TGTGCAGCAAGTGAAACCTCCTACGACAAGGTGATATTT CAASETSYDKVIF TRAV13-1*01 TRAJ50*01 49.0 3010.0 TGTGCCAGCAGCTGGCTCGGGGATCGGTATAATTCACCCCTCCACTTT CASSWLGDRYNSPLHF TRBV7-9*01 TRBJ1-6*01 92.0 2826.0 CAASETSYDKVIF_CASSWLGDRYNSPLHF 65 2452 BZLF1-190-197 EBV 0.8 2156 NEG 145 2307 12 EBV BZLF1 RAKFKQLL effector T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-B*08:01 B2M MHCI -8296 chip0423_408869 -1.4 10.02 Chip2 T1D_4 T1D TGCGCCAGCAGTCAAAGGGACAGCCCAAGAAATTCCGTGCCGTTCAGTACTTC CASSQRDScc?KKFRAVQYF TRBV4-3*01 TRBJ2-4*01 164.0 7238.0 _CASSQRDScc?KKFRAVQYF 1 5176 ZNT8-VTD-9 ZNT8 0.86 65 ZNT8-VTD-9 140 5036 3 HomoSapiens ZNT8 VTDAAHLLI Naive T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*01:01 B2M MHCI -8297 chip0423_327660 -0.55 9.0 Chip2 healthy_4 healthy TGTGCCAGCAGCCAAGATAATCTAGCGGGGGCCCCATACAATGAGCAGTTCTTC CASSQDNLAGAPYNEQFF TRBV4-2*01 TRBJ2-1*01 15.0 277.0 _CASSQDNLAGAPYNEQFF 1 5918 MART1-ALA MART1 0.62 269 NEG 113 5805 4 HomoSapiens MART1 ALAGIGILTV Naive T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*02:01 B2M MHCI -8298 chip0423_224543 -3.74 8.96 Chip2 T1D_4 T1D TGTGCAATGAGCGGGTCCAACTTTGGAAATGAGAAATTAACCTTT CAMSGSNFGNEKLTF TRAV12-3*01 TRAJ48*01 54.0 2117.0 CAMSGSNFGNEKLTF_ 6 5440 PGT-178 PGT 0.58 1480 PGT-178 104 5336 2 HomoSapiens PGT LLAGIGTVPI Naive T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*02:01 B2M MHCI -8299 chip0423_828528 9.18 8.26 Chip2 T1D_5 T1D TGCGCCAGCAGCTCTGAACAGGGACCAATCGCCGGGGAGCTGTTTTTT CASSSEQGPIAGELFF TRBV5-1*01 TRBJ2-2*01 55.0 2025.0 _CASSSEQGPIAGELFF 1 5667 BZLF1-190-197 EBV 0.56 2156 NEG 158 5509 8 EBV BZLF1 RAKFKQLL effector memory T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-B*08:01 B2M MHCI -8300 chip0423_280302 -2.05 7.19 Chip2 T1D_6 T1D TGTGCCAGCAGTTTAATCCCGGGAACCTACGAGCAGTACTTC CASSLIPGTYEQYF TRBV27*01 TRBJ2-7*01 24.0 1992.0 _CASSLIPGTYEQYF 1 4317 GAD2-VSA-10 GAD65 0.81 21 GAD2-VSA-10 146 4171 3 HomoSapiens GAD2 VSATAGTTVY Naive T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*01:01 B2M MHCI -8301 chip0423_784274 5.83 13.29 Chip2 T1D_6 T1D TGTGCCAGTAGTATCAGGTCCTCCTACGAGCAGTACTTC CASSIRSSYEQYF TRBV19*01 TRBJ2-7*01 18.0 1150.0 _CASSIRSSYEQYF 36 6898 M1 FLU 0.77 1250 NEG 160 6738 7 InfluenzaA M1 GILGFVFTL transitional T cells between effector and memory populations PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*02:01 B2M MHCI -8302 chip0423_784535 6.2 13.18 Chip2 T1D_6 T1D TGTGCCAGTAGTATTAGGTCTAGCTACGAGCAGTACTTC CASSIRSSYEQYF TRBV19*01 TRBJ2-7*01 16.0 782.0 _CASSIRSSYEQYF 36 5227 M1 FLU 0.6 1250 NEG 132 5095 7 InfluenzaA M1 GILGFVFTL transitional T cells between effector and memory populations PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*02:01 B2M MHCI -8303 chip0423_584470 12.74 13.08 Chip2 T1D_4 T1D TGTGCCAGCAGCTTAACGGTTCTGGCAGGTCCAAACACTGAAGCTTTCTTT CASSLTVLAGPNTEAFF TRBV7-3*01 TRBJ1-1*01 23.0 716.0 _CASSLTVLAGPNTEAFF 32 2620 BZLF1-190-197 EBV 0.68 2156 NEG 153 2467 10 EBV BZLF1 RAKFKQLL effector memory T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-B*08:01 B2M MHCI -8304 chip0423_264932 -2.58 9.66 Chip2 T1D_4 T1D TGTGCAATGAGCGCGGGAAACTTTGGAAATGAGAAATTAACCTTT CAMSAGNFGNEKLTF TRAV12-3*01 TRAJ48*01 76.0 2991.0 TGTGCAGCAGAAGAAGGCTCTAGCAACACAGGCAAACTAATCTTT CAAEEGSSNTGKLIF TRAV23/DV6*01 TRAJ37*01 59.0 2379.0 0.33 TGTGCCAGCAGCTTGCTGTCCGAAGACCCCGGCCGGGACTATGGCTACACCTTC CASSLLSEDPGRDYGYTF TRBV11-3*01 TRBJ1-2*01 9.0 382.0 CAMSAGNFGNEKLTF_CASSLLSEDPGRDYGYTF 1 5488 PGT-178 PGT 0.54 1480 NEG 151 5337 3 HomoSapiens PGT LLAGIGTVPI Naive T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*02:01 B2M MHCI -8305 chip0423_188811 9.02 8.54 Chip2 T1D_4 T1D TGTGCCAGCAGCCAAGTCAACAACCCGGGGGATGGCTACACCTTC CASSQVNNPGDGYTF TRBV14*01 TRBJ1-2*01 26.0 722.0 _CASSQVNNPGDGYTF 94 7582 EBNA3A-158-166 EBV 0.5 444 NEG 205 7377 8 EBV EBNA3A QAKWRLQTL effector memory T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-B*08:01 B2M MHCI -8306 chip0423_393406 -0.29 9.32 Chip2 T1D_6 T1D TGTGCCGTGTCTAACACCGGTACCCAGTTCTATTTT CAVSNTGTQFYF TRAV12-2*01 TRAJ49*01 7.0 736.0 TGTGCCAGCAGCTTAGGGGAAATTGGCTACACCTTC CASSLGEIGYTF TRBV7-9*01 TRBJ1-2*01 17.0 987.0 CAVSNTGTQFYF_CASSLGEIGYTF 1 4817 PGT-178 PGT 0.43 1480 NEG 148 4669 4 HomoSapiens PGT LLAGIGTVPI Naive T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*02:01 B2M MHCI -8307 chip0423_425337 -4.4 8.26 Chip2 T1D_6 T1D TGTGCCGTGAATGGGGGTGCCAGACTCATGTTT CAVNGGARLMF TRAV8-1*01 TRAJ31*01 18.0 1953.0 TGTGCGGAACGATGGGGGGGCCAGGAGCAGTTCTTC CAERWGGQEQFF TRBV19*01 TRBJ2-1*01 34.0 3818.0 CAVNGGARLMF_CAERWGGQEQFF 1 6530 ZNT8-141-149 ZNT8 0.5 5 NEG 155 6375 2 HomoSapiens ZNT8 ILGALLSIL Naive T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*02:01 B2M MHCI -8308 chip0423_815890 12.03 7.42 Chip2 T1D_4 T1D TGTGCTCTCACTACCTATGGTCAGAATTTTGTCTTT CALTTYGQNFVF TRAV38-1*01 TRAJ26*01 19.0 2215.0 TGCAGTGCCTCTCGTGACTCCTACGAGCAGTACTTC CSASRDSYEQYF TRBV20-1*01 TRBJ2-7*01 8.0 441.0 CALTTYGQNFVF_CSASRDSYEQYF 15 4682 EBV-LMP1-1 EBV 0.89 237 NEG 133 4549 10 EBV LMP1 YLLEMLWRL effector memory T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*02:01 B2M MHCI -8309 chip0423_762721 6.97 12.39 Chip2 T1D_6 T1D TGTGCCTCCCAAGGAGGAAGCCAAGGAAATCTCATCTTT CASQGGSQGNLIF TRAV20*01 TRAJ42*01 11.0 572.0 TGTGCCAGCAGCTTAGGAGGACAGACAGAGACCCAGTACTTC CASSLGGQTETQYF TRBV13*01 TRBJ2-5*01 15.0 748.0 CASQGGSQGNLIF_CASSLGGQTETQYF 13 8008 ROTA-VP6 ROTA 0.68 47 ROTA-VP6 147 7861 7 RotavirusA VP6 TLLANVTAV transitional T cells between effector and memory populations PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*02:01 B2M MHCI -8310 chip0423_408916 10.37 9.15 Chip2 T1D_5 T1D _ 6746 5527 BZLF1-190-197 EBV 0.63 2156 BZLF1-190-197 161 5366 10 EBV BZLF1 RAKFKQLL effector memory T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-B*08:01 B2M MHCI -8311 chip0423_261528 9.85 8.57 Chip2 T1D_4 T1D TGTGCCAGCACCTTACCGGTCGGAGAAGGGCCCCAGCAATTT CASTLPVGEGPQQF TRBV7-9*01 TRBJ1-5*01 3.0 220.0 _CASTLPVGEGPQQF 1 3586 BZLF1-190-197 EBV 0.97 2156 BZLF1-190-197 157 3429 8 EBV BZLF1 RAKFKQLL effector memory T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-B*08:01 B2M MHCI -8312 chip0423_112265 -2.78 8.08 Chip2 T1D_5 T1D _ 6746 7324 GAD2-STA-10 GAD65 0.84 7 GAD2-STA-10 137 7187 2 HomoSapiens GAD2 STANTNMFTY Naive T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*01:01 B2M MHCI -8313 chip0423_753120 14.23 7.76 Chip2 T1D_6 T1D TGTGCCAGCAGCGTTAGCGGGGCCCCCTACGAGCAGTACTTC CASSVSGAPYEQYF TRBV9*01 TRBJ2-7*01 27.0 1528.0 _CASSVSGAPYEQYF 21 3021 EBNA3A-193-201 EBV 0.58 1022 NEG 164 2857 10 EBV EBNA3A FLRGRAYGL effector memory T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-B*08:01 B2M MHCI -8314 chip0423_551582 10.67 7.59 Chip2 T1D_5 T1D TGTGCTGTGGAACGGTGGTGGTACTAGCTATGGAAAGCTGACATTT CAVERWWta??ctSYGKLTF TRAV36/DV7*01 TRAJ52*01 2.0 60.0 CAVERWWta??ctSYGKLTF_ 1 4899 BZLF1-190-197 EBV 0.63 2156 NEG 169 4730 10 EBV BZLF1 RAKFKQLL effector memory T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-B*08:01 B2M MHCI -8315 chip0423_530120 -1.8 9.3 Chip2 T1D_5 T1D TGTGCTGTGAGTGATTCCGGGGGGCCGGGCGGATCTGAAAAGCTGGTCTTT CAVSDSGGPGGSEKLVF TRAV8-4*01 TRAJ57*01 101.0 4017.0 CAVSDSGGPGGSEKLVF_ 1 5882 GAD2-FQQ-9 GAD65 0.45 10 GAD2-FQQ-9 138 5744 3 HomoSapiens GAD2 FQQDKHYDL Naive T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-B*08:01 B2M MHCI -8316 chip0423_325706 10.39 9.0 Chip2 T1D_5 T1D TGTGCAGCAACGGAAACCTCCTACGACAAGGTGATATTT CAATETSYDKVIF TRAV13-1*01 TRAJ50*01 1.0 20.0 TGTGCCAGCAGCCCTCCTGGGAGCAATGAAAAACTGTTTTTT CASSPPGSNEKLFF TRBV7-9*01 TRBJ1-4*01 15.0 481.0 CAATETSYDKVIF_CASSPPGSNEKLFF 1 4661 BZLF1-190-197 EBV 0.86 2156 NEG 167 4494 10 EBV BZLF1 RAKFKQLL effector memory T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-B*08:01 B2M MHCI -8317 chip0423_631884 -3.3 14.22 Chip2 T1D_6 T1D TGTGCCGTGAACGGGTATGGAGGAAGCCAAGGAAATCTCATCTTT CAVNGYGGSQGNLIF TRAV12-2*01 TRAJ42*01 121.0 4280.0 TGTGCCAGCAGTTTATCCAGGTTAGGATCACCCCTCCACTTT CASSLSRLGSPLHF TRBV28*01 TRBJ1-6*01 19.0 1217.0 CAVNGYGGSQGNLIF_CASSLSRLGSPLHF 1 3239 PGT-178 PGT 0.8 1480 PGT-178 143 3096 1 HomoSapiens PGT LLAGIGTVPI Naive T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*02:01 B2M MHCI -8318 chip0423_662608 10.68 9.13 Chip2 T1D_5 T1D TGTGCCAGCAGCTTATTGGGATCGGTGGACACTGAAGCTTTCTTT CASSLLGSVDTEAFF TRBV7-9*01 TRBJ1-1*01 18.0 581.0 _CASSLLGSVDTEAFF 3 4778 BZLF1-190-197 EBV 0.5 2156 NEG 145 4633 9 EBV BZLF1 RAKFKQLL effector memory T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-B*08:01 B2M MHCI -8319 chip0423_408585 13.83 10.69 Chip2 T1D_5 T1D TGTGCAGAGATGGAAACCTCCTACGACAAGGTGATATTT CAEMETSYDKVIF TRAV13-2*01 TRAJ50*01 25.0 2034.0 CAEMETSYDKVIF_ 6 3638 BZLF1-190-197 EBV 0.65 2156 NEG 128 3510 9 EBV BZLF1 RAKFKQLL effector memory T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-B*08:01 B2M MHCI -8320 chip0423_13204 -1.58 7.88 Chip2 T1D_5 T1D CGTGCAGTCTCTGGTACTAGCTATGGACAGCCGTCATTT RAVSGTSYGQPSF TRAV13-2*01 TRAJ52*01 3.0 135.0 TGCAGCGTTCCGGAGCTGGCTTGGCAGACCCAGTACTTC CSVPELAWQTQYF TRBV29-1*01 TRBJ2-5*01 179.0 17238.0 RAVSGTSYGQPSF_CSVPELAWQTQYF 1 8633 IAPP-ILK-8 IAPP 0.58 20 NEG 148 8485 3 HomoSapiens IAPP ILKLQVFL Naive T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-B*08:01 B2M MHCI -8321 chip0423_836985 -2.93 14.49 Chip2 healthy_3 healthy TGTGCAATGAGGTTATCTAACTTTGGAAATGAGAAATTAACCTTT CAMRLSNFGNEKLTF TRAV12-3*01 TRAJ48*01 76.0 1781.0 TGCAGTGCTGGGCGGGACAGGAAAATTAGCGGAGCCCGCACCGGGGAGCTGTTTTTT CSAGRDRKISGARTGELFF TRBV20-1*01 TRBJ2-2*01 15.0 491.0 CAMRLSNFGNEKLTF_CSAGRDRKISGARTGELFF 1 2864 PGT-178 PGT 1.0 1480 NEG 182 2682 1 HomoSapiens PGT LLAGIGTVPI Naive T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*02:01 B2M MHCI -8322 chip0423_231812 -3.14 13.92 Chip2 T1D_6 T1D TGTGCCAGCAGCTTAGGCCCGGTGGTTCTGCACGAGCAGTACTTC CASSLGPVVLHEQYF TRBV7-2*01 TRBJ2-7*01 12.0 517.0 _CASSLGPVVLHEQYF 1 3561 G6PC2-YLK-8 IGRP 0.7 27 NEG 131 3430 1 HomoSapiens G6PC2 YLKTNLFL Naive T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-B*08:01 B2M MHCI -8323 chip0423_230502 14.0 11.64 Chip2 T1D_5 T1D TGCGCTGTGATACGGGCAAATCAACCTTT CAVIcg?GKSTF TRAV1-1*01 TRAJ27*01 2.0 105.0 TGTGCCAGCCAACTAGCGGGAGGCACCGGGGGGCTGTTTTTT CASQLAGGTGGLFF TRBV24-1*01 TRBJ2-2*01 5.0 300.0 CAVIcg?GKSTF_CASQLAGGTGGLFF 1 2507 BZLF1-190-197 EBV 0.57 2156 NEG 142 2365 12 EBV BZLF1 RAKFKQLL effector T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-B*08:01 B2M MHCI -8324 chip0423_193289 -1.59 7.93 Chip2 T1D_4 T1D TGTGCAATGAGAGCTGGAGGCTTCAAAACTATCTTT CAMRAGGFKTIF TRAV14/DV4*01 TRAJ9*01 15.0 1456.0 TGTGCCAGCAGTTTTACAGGGGGCCATGGCTACACCTTC CASSFTGGHGYTF TRBV12-3*01,TRBV12-4*01 TRBJ1-2*01 41.0 2696.0 CAMRAGGFKTIF_CASSFTGGHGYTF 1 5191 CVB3-P3A CVB 0.5 77 NEG 157 5034 4 CoxsackievirusB P3A GIIYIIYKL Naive T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*02:01 B2M MHCI -8325 chip0423_413408 11.95 12.73 Chip2 T1D_5 T1D TGTGCAATGAGAGATGGGGAAGGACAAGGCTTCTCCTTTATCTTT CAMRDGEGQGFSFIF TRAV14/DV4*01 TRAJ11*01 71.0 4202.0 TGTGCCAGCAGCTCAGCGGGGGGGGGCCCCGAGCAGTACTTC CASSSAGGGPEQYF TRBV7-9*01 TRBJ2-7*01 66.0 3764.0 CAMRDGEGQGFSFIF_CASSSAGGGPEQYF 1 2296 BZLF1-190-197 EBV 0.67 2156 NEG 136 2160 11 EBV BZLF1 RAKFKQLL effector T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-B*08:01 B2M MHCI -8326 chip0423_436240 11.1 6.88 Chip2 healthy_4 healthy _ 6746 5045 EBV-BRLF1 EBV 0.83 1264 EBV-BRLF1 157 4888 10 EBV BRLF1 YVLDHLIVV effector memory T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*02:01 B2M MHCI -8327 chip0423_335253 9.12 9.89 Chip2 T1D_5 T1D TGTTCAGCAAAGGAAACCTCCTACGACAAGGTGATATTT CSAKETSYDKVIF TRAV13-1*01 TRAJ50*01 53.0 3978.0 TGTGCCAGCAGCCGCCTTGGACAGGAAACTGCCACAGATACGCAGTATTTT CASSRLGQETATDTQYF TRBV11-1*01 TRBJ2-3*01 43.0 1450.0 CSAKETSYDKVIF_CASSRLGQETATDTQYF 1 5720 BZLF1-190-197 EBV 0.71 2156 NEG 149 5571 8 EBV BZLF1 RAKFKQLL effector memory T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-B*08:01 B2M MHCI -8328 chip0423_316851 13.76 9.0 Chip2 healthy_4 healthy _ 6746 2987 BZLF1-190-197 EBV 1.0 2156 NEG 166 2821 12 EBV BZLF1 RAKFKQLL effector T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-B*08:01 B2M MHCI -8329 chip0423_715834 7.65 10.95 Chip2 healthy_3 healthy TGTGCCAGTAGTCCTCTCCTAGCGGCCCAAGGCTACGAGCAGTACTTC CASSPLLAAQGYEQYF TRBV19*01 TRBJ2-7*01 38.0 1245.0 _CASSPLLAAQGYEQYF 1 6510 NP44-52 FLU 0.63 474 NP44-52 140 6370 7 InfluenzaA NP CTELKLSDY transitional T cells between effector and memory populations PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*01:01 B2M MHCI -8330 chip0423_521800 15.53 9.69 Chip2 T1D_6 T1D TGCATCCTCCCACTTGCTGGTGGTACTAACTATGGAAAGCTGACATTT CILPLAGGTNYGKLTF TRAV26-2*01 TRAJ52*01 50.0 2030.0 TGTGCCAGCAGCTTGGGACAGGCCTACGAGCAGTACTTC CASSLGQAYEQYF TRBV7-8*01 TRBJ2-7*01 40.0 2559.0 CILPLAGGTNYGKLTF_CASSLGQAYEQYF 3 4196 EBNA3A-193-201 EBV 0.86 1022 NEG 156 4040 12 EBV EBNA3A FLRGRAYGL effector T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-B*08:01 B2M MHCI -8331 chip0423_462460 -2.99 14.46 Chip2 T1D_6 T1D TGTGTGGTGAACATGAATGCCAGGCTCCTGTTT CVVNMNARLLF TRAV12-1*01 TRAJ31*01 12.0 1108.0 TGCGCCAGCAGCCAAGAGTGGGCGGGACAGGGCTACGAGCAGTACTTC CASSQEWAGQGYEQYF TRBV4-3*01 TRBJ2-7*01 40.0 1150.0 CVVNMNARLLF_CASSQEWAGQGYEQYF 1 4183 MART1-A28L MART1 0.44 84 NEG 121 4062 1 HomoSapiens MART1 ALGIGILTV Naive T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*02:01 B2M MHCI -8332 chip0423_2275 6.51 14.55 Chip2 healthy_3 healthy TGTGTGGTGAACGGGGAAAATGCCAGACTCATGTTT CVVNGENARLMF TRAV12-1*01 TRAJ31*01 10.0 633.0 TGTGCCAGCAGTGAAATGTGGGGAGCACCCCTCCACTTT CASSEMWGAPLHF TRBV2*01 TRBJ1-6*01 30.0 1395.0 CVVNGENARLMF_CASSEMWGAPLHF 12 5342 NP44-52 FLU 0.68 474 NP44-52 140 5202 7 InfluenzaA NP CTELKLSDY transitional T cells between effector and memory populations PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*01:01 B2M MHCI -8333 chip0423_173168 15.28 10.25 Chip2 T1D_5 T1D TGTGCAATGAGGGCCATTGAGGGGGCAAACAACCTCTTCTTT CAMRAIEGANNLFF TRAV14/DV4*01 TRAJ36*01 97.0 5459.0 CAMRAIEGANNLFF_ 17 3566 BZLF1-190-197 EBV 0.8 2156 BZLF1-190-197 154 3412 12 EBV BZLF1 RAKFKQLL effector T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-B*08:01 B2M MHCI -8334 chip0423_104595 6.95 10.72 Chip2 T1D_6 T1D TGTGCAATGAGAGATGGGGGAGGCAGCCAAGGAAATCTCATCTTT CAMRDGGGSQGNLIF TRAV14/DV4*01 TRAJ42*01 44.0 1997.0 TGTGCCAGTAGTACTCGCGCGAGCCAGCCCCAGCATTTT CASSTRASQPQHF TRBV19*01 TRBJ1-5*01 48.0 2671.0 CAMRDGGGSQGNLIF_CASSTRASQPQHF 1 9525 M1 FLU 0.86 1250 M1 144 9381 7 InfluenzaA M1 GILGFVFTL transitional T cells between effector and memory populations PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*02:01 B2M MHCI -8335 chip0423_287525 12.02 10.3 Chip2 T1D_4 T1D TGTGCCAGCAGCTTAACGGTTCTGGCAGGTCCAAACACTGAAGCTTTCTTT CASSLTVLAGPNTEAFF TRBV7-3*01 TRBJ1-1*01 18.0 514.0 _CASSLTVLAGPNTEAFF 32 5210 BZLF1-190-197 EBV 0.95 2156 BZLF1-190-197 151 5059 9 EBV BZLF1 RAKFKQLL effector memory T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-B*08:01 B2M MHCI -8336 chip0423_229908 -0.8 6.88 Chip2 healthy_4 healthy TGTGCCTACTACATAGGTAACAATGCCAGACTCATGTTT CAYYIGNNARLMF TRAV24*01 TRAJ31*01 15.0 820.0 TGTGCCAGTAGTCCTTCCGGGACAGGGGGCAATGAGCAGTTCTCC CASSPSGTGGNEQFS TRBV19*01 TRBJ2-1*01 36.0 2289.0 CAYYIGNNARLMF_CASSPSGTGGNEQFS 1 6096 M1 FLU 0.93 1250 M1 143 5953 3 InfluenzaA M1 GILGFVFTL Naive T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*02:01 B2M MHCI -8337 chip0423_98753 15.14 9.63 Chip2 T1D_5 T1D TGTGCAGCTCAGGAAACCTCCTACGACAAGGTGATATTT CAAQETSYDKVIF TRAV13-1*01 TRAJ50*01 15.0 1060.0 TGTGCCAGCACCCAGGTAGACAGACCCAACTATGGCTACACCTTC CASTQVDRPNYGYTF TRBV7-9*01 TRBJ1-2*01 103.0 4163.0 CAAQETSYDKVIF_CASTQVDRPNYGYTF 17 3946 BZLF1-190-197 EBV 0.5 2156 NEG 169 3777 12 EBV BZLF1 RAKFKQLL effector T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-B*08:01 B2M MHCI -8338 chip0423_847125 -4.16 8.09 Chip2 T1D_4 T1D TGTGCCAGCATCGGACTAGCTCCGGAGACCCAGTACTTC CASIGLAPETQYF TRBV2*01 TRBJ2-5*01 1.0 30.0 _CASIGLAPETQYF 1 7223 ZNT8-YAY-8 ZNT8 0.75 54 ZNT8-YAY-8 137 7086 2 HomoSapiens ZNT8 YAYAKWKL Naive T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-B*08:01 B2M MHCI -8339 chip0423_248998 9.67 11.07 Chip2 T1D_6 T1D TGCAGCGTGGGGACAGGGGGCACTAATGAAAAACTGTTTTTT CSVGTGGTNEKLFF TRBV29-1*01 TRBJ1-4*01 3.0 54.0 _CSVGTGGTNEKLFF 638 6116 EBV-BLMF1 EBV 0.67 2531 NEG 169 5947 9 EBV BLMF1 GLCTLVAML effector memory T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*02:01 B2M MHCI -8340 chip0423_677162 -2.77 9.05 Chip2 T1D_4 T1D TGTGCAATGAGTTTATCCAACTTTGGGCTTGAGTGTTTATCCTTT CAMSLSNFGLECLSF TRAV12-3*01 TRAJ48*01 46.0 1359.0 TGTGCCAGCAGAGGGGATGGGCGGGGGCGAATACCCTACGAGCAGTACTTC CASRGDGRGRIPYEQYF TRBV27*01 TRBJ2-7*01 35.0 1762.0 CAMSLSNFGLECLSF_CASRGDGRGRIPYEQYF 1 5938 PGT-178 PGT 0.78 1480 PGT-178 146 5792 3 HomoSapiens PGT LLAGIGTVPI Naive T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*02:01 B2M MHCI -8341 chip0423_642287 6.97 13.25 Chip2 T1D_6 T1D TGTGCTGTGAGAGACATCCATACTGGAGGCTTCAAAACTATCTTT CAVRDIHTGGFKTIF TRAV3*01 TRAJ9*01 33.0 1379.0 TGTGCCAGCAGCGCCAGGGATGACTACGACGAGCAGTACTTC CASSARDDYDEQYF TRBV9*01 TRBJ2-7*01 26.0 1512.0 CAVRDIHTGGFKTIF_CASSARDDYDEQYF 2 4136 M1 FLU 0.71 1250 NEG 144 3992 7 InfluenzaA M1 GILGFVFTL transitional T cells between effector and memory populations PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*02:01 B2M MHCI -8342 chip0423_6655 8.26 10.51 Chip2 T1D_5 T1D TGTGCCAGCCAACTAGCGGGAGGCACCGGGGAGCTGTTTTTT CASQLAGGTGELFF TRBV24-1*01 TRBJ2-2*01 39.0 2070.0 _CASQLAGGTGELFF 69 4758 BZLF1-190-197 EBV 0.6 2156 NEG 157 4601 8 EBV BZLF1 RAKFKQLL effector memory T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-B*08:01 B2M MHCI -8343 chip0423_640484 13.81 9.2 Chip2 T1D_4 T1D TGCATCGTCAGAGAGGGAGGAGGTGCTGACGGACTCACCTTT CIVREGGGADGLTF TRAV26-1*01 TRAJ45*01 24.0 1985.0 TGTGCCAGCAGCTTAGCGGTCGGAGAAGGGCCCCAGCATTTT CASSLAVGEGPQHF TRBV7-9*01 TRBJ1-5*01 24.0 1477.0 CIVREGGGADGLTF_CASSLAVGEGPQHF 68 5262 BZLF1-190-197 EBV 0.77 2156 BZLF1-190-197 157 5105 8 EBV BZLF1 RAKFKQLL effector memory T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-B*08:01 B2M MHCI -8344 chip0423_166531 -1.3 10.19 Chip2 T1D_6 T1D TGTGCCACCCGTGGTTTGGTCACCCTCGAGGCGCAGTACTGC CATRGLVTLEAQYC TRBV24-1*01 TRBJ2-7*01 3.0 105.0 _CATRGLVTLEAQYC 1 5982 G6PC2-LTS-10 IGRP 0.91 59 G6PC2-LTS-10 136 5846 3 HomoSapiens G6PC2 LTSLTILQLY Naive T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*01:01 B2M MHCI -8345 chip0423_339781 6.36 12.22 Chip2 T1D_6 T1D TGTGCTCTGAGTGAGTACACCGGTAACCAGTTCTATTTT CALSEYTGNQFYF TRAV19*01 TRAJ49*01 2.0 99.0 TGTGCCAGTAGTATAGGAGCGGGGGCCTACGAGCAGTACTTC CASSIGAGAYEQYF TRBV19*01 TRBJ2-7*01 2.0 55.0 CALSEYTGNQFYF_CASSIGAGAYEQYF 1 6437 INS-GSH-9 INS 0.52 19 NEG 138 6299 7 HomoSapiens INS GSHLVEALY transitional T cells between effector and memory populations PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*01:01 B2M MHCI -8346 chip0423_855343 -1.4 6.82 Chip2 healthy_3 healthy TGTGCCAGCAGATCTCCTAGCGGGACGAACACCGGGGAGCTGTTTTTT CASRSPSGTNTGELFF TRBV28*01 TRBJ2-2*01 27.0 1120.0 _CASRSPSGTNTGELFF 1 7650 MART1-ALA MART1 0.78 269 NEG 137 7513 3 HomoSapiens MART1 ALAGIGILTV Naive T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*02:01 B2M MHCI -8347 chip0423_826690 10.99 12.63 Chip2 healthy_3 healthy TGTGCCGTGAAGGAGGGCGGAGAGCTTATCTTC CAVKEGGELIF TRAV8-1*01 TRAJ23*01 6.0 702.0 TGTGCCAGCAGCCAGATGTCAGATACGCAGTATTTT CASSQMSDTQYF TRBV6-2*01,TRBV6-3*01 TRBJ2-3*01 12.0 822.0 CAVKEGGELIF_CASSQMSDTQYF 1 3408 EBV-BRLF1 EBV 0.78 1264 NEG 134 3274 11 EBV BRLF1 YVLDHLIVV effector T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*02:01 B2M MHCI -8348 chip0423_767675 -2.72 10.02 Chip2 T1D_4 T1D TGTGCCGTGGGGGAAGGCTTT CAVGEGF TRAV12-2*01 TRAJ37*01 2.0 16.0 TGTGCCAGCCGTCGATTTGGGGCCGAGCCGTACTTC CASRRFGAEPYF TRBV6-2*01,TRBV6-3*01 TRBJ2-7*01 6.0 440.0 CAVGEGF_CASRRFGAEPYF 1 7105 MART1-ALA MART1 0.5 269 NEG 136 6969 3 HomoSapiens MART1 ALAGIGILTV Naive T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*02:01 B2M MHCI -8349 chip0423_759384 5.36 9.47 Chip2 T1D_6 T1D TGTGCCGTGAACATGATAGGCAGAGGCTCAACCCTGGGGCGCCTCTACCTT CAVNMIGRGSTLGRLYL TRAV12-2*01 TRAJ18*01 15.0 462.0 TGCAGTGCTAGTATAGGGGTCGGGGGGGCCGGTGAGCAGTTCTTC CSASIGVGGAGEQFF TRBV20-1*01 TRBJ2-1*01 1.0 62.0 CAVNMIGRGSTLGRLYL_CSASIGVGGAGEQFF 1 4909 NP30-38 FLU 0.67 72 NEG 176 4733 6 InfluenzaA NP RPIIRPATL central memory T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-B*08:01 B2M MHCI -8350 chip0423_599632 7.3 13.38 Chip2 T1D_4 T1D TGTGCAGCATTCGGAGGAGGTGCTGACGGACTCACCTTT CAAFGGGADGLTF TRAV29/DV5*01 TRAJ45*01 48.0 2901.0 TGTGCCAGCAGCTTAGTTCCTAGCGGGGGGCCCGTATCCACAGATACGCAGTATTTT CASSLVPSGGPVSTDTQYF TRBV11-3*01 TRBJ2-3*01 48.0 1434.0 CAAFGGGADGLTF_CASSLVPSGGPVSTDTQYF 1 3435 M1 FLU 1.0 1250 NEG 151 3284 7 InfluenzaA M1 GILGFVFTL transitional T cells between effector and memory populations PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*02:01 B2M MHCI -8351 chip0423_275364 13.14 7.03 Chip2 T1D_5 T1D TGTGCAGCTCTCGAAACCTCCTACGACAAGGTGATATTT CAALETSYDKVIF TRAV13-1*01 TRAJ50*01 32.0 3467.0 TGTGCCAGCAGTCCCGACGGATCCACCGGGGAGCTGTTTTTT CASSPDGSTGELFF TRBV12-3*01,TRBV12-4*01 TRBJ2-2*01 36.0 1634.0 CAALETSYDKVIF_CASSPDGSTGELFF 14 2966 BZLF1-190-197 EBV 0.64 2156 NEG 175 2791 10 EBV BZLF1 RAKFKQLL effector memory T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-B*08:01 B2M MHCI -8352 chip0423_102979 11.8 7.07 Chip2 T1D_5 T1D _ 6746 5629 BZLF1-190-197 EBV 0.44 2156 BZLF1-190-197 180 5449 10 EBV BZLF1 RAKFKQLL effector memory T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-B*08:01 B2M MHCI -8353 chip0423_575656 -1.72 11.24 Chip2 T1D_5 T1D TGTGCCAGCAGCCAACCGGGCCGAGAAGAGACCCAGTACTTC CASSQPGREETQYF TRBV4-2*01 TRBJ2-5*01 61.0 1771.0 _CASSQPGREETQYF 1 7115 NP225-233 FLU 0.5 23 NEG 155 6960 3 InfluenzaA NP ILKGKFQTA Naive T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-B*08:01 B2M MHCI -8354 chip0423_553815 -2.71 9.12 Chip2 healthy_3 healthy TGTGCCAGGAGGGGGGGCACCTACAATGAGCAGTTCTTC CARRGGTYNEQFF TRBV2*01 TRBJ2-1*01 32.0 2486.0 _CARRGGTYNEQFF 1 5880 HCVNS3-1073-1081 HCV 0.44 36 NEG 122 5758 2 HCV NS3 CINGVCWTV Naive T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*02:01 B2M MHCI -8355 chip0423_548412 12.43 11.37 Chip2 T1D_4 T1D TGTGCCCTGTCGGGCAGCAGTGCTTCCAAGATAATCTTT CALSGSSASKIIF TRAV14/DV4*01 TRAJ3*01 57.0 4085.0 CALSGSSASKIIF_ 2 3657 BZLF1-190-197 EBV 0.55 2156 NEG 137 3520 9 EBV BZLF1 RAKFKQLL effector memory T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-B*08:01 B2M MHCI -8356 chip0423_395331 -4.17 10.84 Chip2 healthy_3 healthy TGTGCTTTCATGAACCCGGCCCTGCCTGGAAATGAGTACTTCACCTTT CAFMNPALPGNEYFTF TRAV38-1*01 TRAJ48*01 26.0 624.0 TGTGCCAGCAGCGGGACTATTCACAGATACGCAGTATTTT CASSGTat??tcTDTQYF TRBV5-6*01 TRBJ2-3*01 1.0 90.0 CAFMNPALPGNEYFTF_CASSGTat??tcTDTQYF 1 3830 ZNT8-165-173 ZNT8 0.64 11 NEG 121 3709 2 HomoSapiens ZNT8 RLLYPDYQI Naive T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*02:01 B2M MHCI -8357 chip0423_683706 6.26 12.63 Chip2 healthy_3 healthy TGTGCTGTGCAGGCCGCGGGCCACCGGTCACCGGTTCTGTTTT CAVQAAG??cTGHRFCF TRAV20*01 TRAJ49*01 24.0 2001.0 TGTGCCAGTAGTCCACTCCTAGCGACCCAAGGCTACGAGCAGTACTTC CASSPLLATQGYEQYF TRBV19*01 TRBJ2-7*01 16.0 722.0 CAVQAAG??cTGHRFCF_CASSPLLATQGYEQYF 1 7681 NP44-52 FLU 0.77 474 NP44-52 135 7546 7 InfluenzaA NP CTELKLSDY transitional T cells between effector and memory populations PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*01:01 B2M MHCI -8358 chip0423_718751 -3.27 9.51 Chip2 T1D_4 T1D TGTGCAGCAAGCGAAGGCCAGTTCTTTTTT CAASEGQFFF TRAV29/DV5*01 TRAJ49*01 2.0 96.0 TGTGCCAGCAGCTTTGCAGGCTCCTACGAGCGGTACTTC CASSFAGSYERYF TRBV7-9*01 TRBJ2-7*01 7.0 253.0 CAASEGQFFF_CASSFAGSYERYF 1 5945 ZNT8-LTS-9 ZNT8 0.5 2 NEG 146 5799 2 HomoSapiens ZNT8 LTSFLLSLF Naive T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*01:01 B2M MHCI -8359 chip0423_500912 -0.71 8.98 Chip2 T1D_6 T1D TGTGCTGTGAGTTACACCGGTAACCAGTTCTATTTT CAVSYTGNQFYF TRAV8-6*01 TRAJ49*01 16.0 835.0 TGTGCCAGCAGCCAAGAGCTCTTAAACACTGAAGCTTTCTTT CASSQELLNTEAFF TRBV4-2*01 TRBJ1-1*01 48.0 1238.0 CAVSYTGNQFYF_CASSQELLNTEAFF 1 6975 MART1-ALA MART1 0.62 269 NEG 159 6816 4 HomoSapiens MART1 ALAGIGILTV Naive T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*02:01 B2M MHCI -8360 chip0423_272136 -3.1 9.21 Chip2 healthy_3 healthy TGTGCCAGCAGTTACTCGAGAACAGATACGCAGTATTTT CASSYSRTDTQYF TRBV6-5*01 TRBJ2-3*01 51.0 2252.0 _CASSYSRTDTQYF 1 4652 HCV-A9N HCV 0.4 5 HCV-A9N 141 4511 2 HCV POL KLVALGINNV Naive T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*02:01 B2M MHCI -8361 chip0423_232297 11.47 7.48 Chip2 T1D_5 T1D TGTGCAGCAAGTGAAACCTCCTACGACAAGGTGATATTT CAASETSYDKVIF TRAV13-1*01 TRAJ50*01 27.0 2571.0 TGTGCCAGCAGCCCCCTGGGGGCGGGCCCCACAGATACGCAGTATTTT CASSPLGAGPTDTQYF TRBV7-9*01 TRBJ2-3*01 1.0 40.0 CAASETSYDKVIF_CASSPLGAGPTDTQYF 1 3872 BZLF1-190-197 EBV 0.74 2156 NEG 151 3721 10 EBV BZLF1 RAKFKQLL effector memory T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-B*08:01 B2M MHCI -8362 chip0423_485601 6.12 12.72 Chip2 T1D_4 T1D TGTGCAGGAGCAGAAGGAGGAAGCCAAGGAAATCTCATCTTT CAGAEGGSQGNLIF TRAV27*01 TRAJ42*01 68.0 1811.0 TGTGCCAGTAGTGTCCGAAGCACCGGGGAGCTGTTTTT CASSVRa?gHRGAVF TRBV19*01 TRBJ2-2*01 8.0 766.0 CAGAEGGSQGNLIF_CASSVRa?gHRGAVF 1 4923 M1 FLU 0.57 1250 NEG 137 4786 7 InfluenzaA M1 GILGFVFTL transitional T cells between effector and memory populations PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*02:01 B2M MHCI -8363 chip0423_445744 11.78 7.49 Chip2 T1D_5 T1D TGTGCCAGCAGCTTAACAGGGACGCGTGAAGCTTTCTTT CASSLTGTREAFF TRBV7-9*01 TRBJ1-1*01 28.0 861.0 _CASSLTGTREAFF 1 3137 BZLF1-190-197 EBV 0.48 2156 NEG 186 2951 10 EBV BZLF1 RAKFKQLL effector memory T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-B*08:01 B2M MHCI -8364 chip0423_354368 -1.22 10.35 Chip2 T1D_4 T1D TGTGCCAGCAGTGATGGGACTAGCGGGTTTGATGAGCAGTTCTTC CASSDGTSGFDEQFF TRBV12-3*01,TRBV12-4*01 TRBJ2-1*01 23.0 1978.0 _CASSDGTSGFDEQFF 1 5023 GAD65-114-122 GAD65 0.44 63 NEG 125 4898 3 HomoSapiens GAD65 VMNILLQYV Naive T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*02:01 B2M MHCI -8365 chip0423_203436 8.67 11.56 Chip2 T1D_4 T1D TGTGCTCTCGTGAATTATGGAGGAAGCCAAGGAAATCTCATCTTT CALVNYGGSQGNLIF TRAV19*01 TRAJ42*01 102.0 3252.0 TGTGCCGTCTGGAGGGACGGAGCCTACGAGCAGTACTTC CAVWRDGAYEQYF TRBV28*01 TRBJ2-7*01 17.0 788.0 CALVNYGGSQGNLIF_CAVWRDGAYEQYF 13 4268 EBV-LMP1-1 EBV 0.8 237 NEG 189 4079 7 EBV LMP1 YLLEMLWRL transitional T cells between effector and memory populations PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*02:01 B2M MHCI -8366 chip0423_807660 7.54 11.84 Chip2 healthy_3 healthy TGTGCCAGCAGCTTTGGGGTTGGGGATACAGAAGAGACCCAGTACTTC CASSFGVGDTEETQYF TRBV5-4*01 TRBJ2-5*01 17.0 1304.0 _CASSFGVGDTEETQYF 1 4321 NP44-52 FLU 0.83 474 NP44-52 125 4196 7 InfluenzaA NP CTELKLSDY transitional T cells between effector and memory populations PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*01:01 B2M MHCI -8367 chip0423_590676 14.27 9.51 Chip2 T1D_4 T1D TGCATCGTCAGAGAGGGAGGAGGTGCTGACGGACTCACCTTT CIVREGGGADGLTF TRAV26-1*01 TRAJ45*01 35.0 1719.0 TGTGCCAGCAGCTTAGCGGTCGGAGAAGGGCCCCAGCATTTT CASSLAVGEGPQHF TRBV7-9*01 TRBJ1-5*01 22.0 1253.0 CIVREGGGADGLTF_CASSLAVGEGPQHF 68 3092 BZLF1-190-197 EBV 0.71 2156 BZLF1-190-197 160 2932 12 EBV BZLF1 RAKFKQLL effector T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-B*08:01 B2M MHCI -8368 chip0423_450206 -1.01 6.62 Chip2 healthy_4 healthy TGTGCCAGCAGTGAGGGCCTAGGGGGGAAAAACATTCAGTACTTC CASSEGLGGKNIQYF TRBV2*01 TRBJ2-4*01 18.0 800.0 _CASSEGLGGKNIQYF 1 6295 GFAP-LRL-8 GFAP 0.92 18 GFAP-LRL-8 123 6172 3 HomoSapiens GFAP LRLRLDQL Naive T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-B*08:01 B2M MHCI -8369 chip0423_511582 10.81 7.46 Chip2 T1D_5 T1D TGTGCCAGCAGCCCGCCGGGACAGAACGAAAAACTGTTTTTT CASSPPGQNEKLFF TRAV36/DV7*01 TRAJ5*01 2.0 12.0 TGTGCCAGCAGCCCGCCGGGACAGAATGAAAAACTGTTTTTT CASSPPGQNEKLFF TRBV5-4*01 TRBJ1-4*01 62.0 2330.0 CASSPPGQNEKLFF_CASSPPGQNEKLFF 1 4786 BZLF1-190-197 EBV 0.81 2156 BZLF1-190-197 166 4620 10 EBV BZLF1 RAKFKQLL effector memory T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-B*08:01 B2M MHCI -8370 chip0423_434063 14.16 10.84 Chip2 T1D_5 T1D TGTGCCAGCACCCAGGTAGACAGACCCAACTATGGCTACACCTTC CASTQVDRPNYGYTF TRBV7-9*01 TRBJ1-2*01 39.0 1675.0 _CASTQVDRPNYGYTF 5 3651 BZLF1-190-197 EBV 1.0 2156 NEG 145 3506 12 EBV BZLF1 RAKFKQLL effector T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-B*08:01 B2M MHCI -8371 chip0423_419457 12.89 10.41 Chip2 T1D_4 T1D TGCATCGTCAGAGAGGGAGGAGATGCTGACGGACTCACCTTT CIVREGGDADGLTF TRAV26-1*01 TRAJ45*01 31.0 1704.0 TGTGCCAGCAGCTTAGCGGTCGGAGAAGGGCCCCAGCATTTT CASSLAVGEGPQHF TRBV7-9*01 TRBJ1-5*01 58.0 2540.0 CIVREGGDADGLTF_CASSLAVGEGPQHF 2 3294 BZLF1-190-197 EBV 0.86 2156 NEG 147 3147 9 EBV BZLF1 RAKFKQLL effector memory T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-B*08:01 B2M MHCI -8372 chip0423_800236 -1.06 9.05 Chip2 T1D_6 T1D TGTGCAGAGAACCTAGGCTTT CAENLGF TRAV13-2*01 TRAJ36*01 4.0 431.0 TGTGCCAGTAGTATAGGCGGCGGGCTGAACACTGAAGCTTTCTTT CASSIGGGLNTEAFF TRBV19*01 TRBJ1-1*01 114.0 3891.0 CAENLGF_CASSIGGGLNTEAFF 1 7648 GFAP-HLK-8 GFAP 0.86 28 GFAP-HLK-8 152 7496 3 HomoSapiens GFAP HLKRNIVV Naive T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-B*08:01 B2M MHCI -8373 chip0423_628957 -2.24 9.22 Chip2 healthy_3 healthy TGTGCCAGCGAATCCATCCCCACCGGGGAGCTGTTTTTT CASESIPTGELFF TRBV5-4*01 TRBJ2-2*01 30.0 1330.0 _CASESIPTGELFF 1 6800 HCVNS4B-1807-1816 HCV 0.83 74 HCVNS4B-1807-1816 146 6654 3 HCV NS4B LLFNILGGWV Naive T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*02:01 B2M MHCI -8374 chip0423_459241 13.24 8.02 Chip2 T1D_4 T1D TGCATCGTCAGAGAGGGAGGAGGTGCTGACGGACTCACCTTT CIVREGGGADGLTF TRAV26-1*01 TRAJ45*01 63.0 4285.0 TGTGCCAGCAGCTTAGCGGTCGGAGAAGGGCCCCAGCATTTT CASSLAVGEGPQHF TRBV7-9*01 TRBJ1-5*01 42.0 1731.0 CIVREGGGADGLTF_CASSLAVGEGPQHF 68 2875 BZLF1-190-197 EBV 0.86 2156 BZLF1-190-197 179 2696 10 EBV BZLF1 RAKFKQLL effector memory T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-B*08:01 B2M MHCI -8375 chip0423_417982 -2.84 9.26 Chip2 T1D_5 T1D TGTGCCCCCCTAGGGGGGAGCCCAGAAGCTGGTATTT CAPLGG??aAQKLVF TRAV17*01 TRAJ54*01 1.0 21.0 TGTGCCAGCAGTCAATCGCCGGGACTAGCGTGGGAGACCCAGTACTTC CASSQSPGLAWETQYF TRBV2*01 TRBJ2-5*01 16.0 877.0 CAPLGG??aAQKLVF_CASSQSPGLAWETQYF 1 5194 NP225-233 FLU 0.65 23 NP225-233 142 5052 2 InfluenzaA NP ILKGKFQTA Naive T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-B*08:01 B2M MHCI -8376 chip0423_175604 12.35 10.41 Chip2 healthy_3 healthy _ 6746 5571 GAD65-114-122 GAD65 0.81 63 GAD65-114-122 148 5423 9 HomoSapiens GAD65 VMNILLQYV effector memory T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*02:01 B2M MHCI -8377 chip0423_621087 -3.6 8.42 Chip2 healthy_3 healthy TGTGCAATGAGCCCCGATAGGTCTGGGGCTGGGAGTTACCAACTCACTTTC CAMSPDRSGAGSYQLTF TRAV12-3*01 TRAJ28*01 44.0 1942.0 CAMSPDRSGAGSYQLTF_ 1 6291 PGT-178 PGT 0.74 1480 NEG 137 6154 2 HomoSapiens PGT LLAGIGTVPI Naive T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*02:01 B2M MHCI -8378 chip0423_653200 -3.62 8.65 Chip2 T1D_6 T1D _ 6746 6357 NP140-148 FLU 0.93 102 NP140-148 155 6202 2 InfluenzaA NP HSNLNDATY Naive T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*01:01 B2M MHCI -8379 chip0423_798683 15.45 10.71 Chip2 T1D_5 T1D TGTGCCAGCAGCCCCGGGACAGGGAATTCACCCCTCCACTTT CASSPGTGNSPLHF TRAV36/DV7*01 TRAJ11*01 5.0 28.0 TGTGCCAGCAGCCCCGGGACAGGGAATTCACCCCTCCACTTT CASSPGTGNSPLHF TRBV7-9*01 TRBJ1-6*01 108.0 5510.0 CASSPGTGNSPLHF_CASSPGTGNSPLHF 1 2803 BZLF1-190-197 EBV 0.5 2156 NEG 134 2669 12 EBV BZLF1 RAKFKQLL effector T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-B*08:01 B2M MHCI -8380 chip0423_533887 -2.77 9.0 Chip2 T1D_6 T1D TGTGCCAGCAGGTCGAGGGGTTCCACCTACGAGCAGTACTTC CASRSRGSTYEQYF TRBV11-2*01 TRBJ2-7*01 17.0 737.0 _CASRSRGSTYEQYF 1 7963 INS-6-16 INS 0.78 20 INS-6-16 141 7822 2 HomoSapiens INS RLLPLLALLAL Naive T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*02:01 B2M MHCI -8381 chip0423_676210 10.24 6.71 Chip2 T1D_5 T1D TGTGCCAGCCTGCATACGCAGACTAACACTGAAGCTTTCTTT CASLHTQTNTEAFF TRBV12-3*01,TRBV12-4*01 TRBJ1-1*01 5.0 94.0 _CASLHTQTNTEAFF 1 7619 BZLF1-190-197 EBV 0.92 2156 NEG 142 7477 10 EBV BZLF1 RAKFKQLL effector memory T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-B*08:01 B2M MHCI -8382 chip0423_572453 -2.01 13.19 Chip2 T1D_5 T1D TGTGCCAGCAGCCAACTGCTAGCGGGGGCTAACAATGAGCAGTTCTTC CASSQLLAGANNEQFF TRBV4-2*01 TRBJ2-1*01 55.0 1653.0 _CASSQLLAGANNEQFF 1 3344 gp160-586-593 HIV 0.86 30 gp160-586-593 127 3217 1 HIV-1 gp160 YLKDQQLL Naive T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-B*08:01 B2M MHCI -8383 chip0423_435119 -3.59 11.97 Chip2 T1D_6 T1D TGTGCAATGAGCGTATCTAACTTTGGAAATGAGAAATTAACCTTT CAMSVSNFGNEKLTF TRAV12-3*01 TRAJ48*01 82.0 2468.0 TGTGCCAGCAGGAAAACCCTCGCAGGGGCTGGGGCCAACGTCCTGACTTTC CASRKTLAGAGANVLTF TRBV3-1*01 TRBJ2-6*01 82.0 3745.0 CAMSVSNFGNEKLTF_CASRKTLAGAGANVLTF 1 4742 PGT-178 PGT 0.54 1480 PGT-178 149 4593 1 HomoSapiens PGT LLAGIGTVPI Naive T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*02:01 B2M MHCI -8384 chip0423_21844 -0.84 7.32 Chip2 healthy_4 healthy _ 6746 5831 PGT-178 PGT 0.5 1480 NEG 154 5677 3 HomoSapiens PGT LLAGIGTVPI Naive T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*02:01 B2M MHCI -8385 chip0423_103311 -3.22 9.07 Chip2 healthy_4 healthy TGTGCCAGCAGTTTAACCGGGGGCGCGGACACTGAAGCTTTCTTT CASSLTGGADTEAFF TRBV27*01 TRBJ1-1*01 15.0 706.0 _CASSLTGGADTEAFF 1 4973 PGT-178 PGT 0.86 1480 NEG 152 4821 2 HomoSapiens PGT LLAGIGTVPI Naive T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*02:01 B2M MHCI -8386 chip0423_684562 -3.23 7.57 Chip2 T1D_6 T1D TGTGTGGTGAGTGGGGCAGGCTTTCAGAAACTTGTATTT CVVSGAGFQKLVF TRAV10*01 TRAJ8*01 17.0 1480.0 TGCGCCAGCAGCCAAGCGCCAGGGGACCCCTACGAGCAGTACTTC CASSQAPGDPYEQYF TRBV4-3*01 TRBJ2-7*01 13.0 567.0 CVVSGAGFQKLVF_CASSQAPGDPYEQYF 1 8231 ZNT8-YAY-8 ZNT8 0.62 54 NEG 135 8096 2 HomoSapiens ZNT8 YAYAKWKL Naive T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-B*08:01 B2M MHCI -8387 chip0423_110545 7.96 10.01 Chip2 T1D_4 T1D TGTGCAGAGAACGCCAGATACTCTGGGGCTGGGAGTTACCAACTCACTTTC CAENARYSGAGSYQLTF TRAV13-2*01 TRAJ28*01 63.0 2042.0 TGCGCCAGCAGCTTGGAGCTGGGGCTTCCCTACGAGCAGTACTTC CASSLELGLPYEQYF TRBV5-1*01 TRBJ2-7*01 14.0 914.0 CAENARYSGAGSYQLTF_CASSLELGLPYEQYF 1 8462 EBNA3A-158-166 EBV 0.68 444 EBNA3A-158-166 158 8304 8 EBV EBNA3A QAKWRLQTL effector memory T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-B*08:01 B2M MHCI -8388 chip0423_394307 12.6 7.99 Chip2 T1D_5 T1D TGTGCACTGGGCGCGGGGGGCGCCGGAGGCTTCAAAACTATCTTC CALGAGGAGGFKTIF TRAV14/DV4*01 TRAJ9*01 27.0 1868.0 TGCAGTGCTAGAAGGTCGGGACAGGGGATTAAAAACACCATATATTTT CSARRSGQGIKNTIYF TRBV20-1*01 TRBJ1-3*01 16.0 795.0 CALGAGGAGGFKTIF_CSARRSGQGIKNTIYF 1 2498 BZLF1-190-197 EBV 0.8 2156 NEG 172 2326 10 EBV BZLF1 RAKFKQLL effector memory T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-B*08:01 B2M MHCI -8389 chip0423_369211 -5.25 9.42 Chip2 healthy_3 healthy TGTGCCAGTACATCCAAAGAAGCCTATAATTCACCCCTCCACTTT CASTSKEAYNSPLHF TRBV19*01 TRBJ1-6*01 21.0 522.0 _CASTSKEAYNSPLHF 1 5732 NP44-52 FLU 0.71 474 NEG 132 5600 2 InfluenzaA NP CTELKLSDY Naive T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*01:01 B2M MHCI -8390 chip0423_196496 15.04 10.0 Chip2 T1D_4 T1D TGCATCGTCAGAGAGGGAGGAGGTGCTGACGGGCTCTCCTTT CIVREGGGADGLSF TRAV26-1*01 TRAJ45*01 8.0 296.0 TGTGCCAGCAGCTTAGCGGTCGGAGAAGGGCCCCAGCATTTT CASSLAVGEGPQHF TRBV7-9*01 TRBJ1-5*01 46.0 1522.0 CIVREGGGADGLSF_CASSLAVGEGPQHF 1 3382 BZLF1-190-197 EBV 0.56 2156 BZLF1-190-197 169 3213 12 EBV BZLF1 RAKFKQLL effector T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-B*08:01 B2M MHCI -8391 chip0423_727107 13.3 8.23 Chip2 T1D_4 T1D TGCAGCGTTGGATCAGGGGGAACTAATGAAAAACTGTTTTTT CSVGSGGTNEKLFF TRBV29-1*01 TRBJ1-4*01 122.0 5842.0 _CSVGSGGTNEKLFF 6 3360 EBV-BLMF1 EBV 0.67 2531 NEG 174 3186 10 EBV BLMF1 GLCTLVAML effector memory T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*02:01 B2M MHCI -8392 chip0423_354751 11.29 9.93 Chip2 T1D_5 T1D TGTGCAGCTCAGGAAACCTCCTACGACAAGGTGATATTT CAAQETSYDKVIF TRAV13-1*01 TRAJ50*01 1.0 95.0 TGTGCCAGCACCCAGGTAGACAGACCCAACTATGGCTACACCTTC CASTQVDRPNYGYTF TRBV7-9*01 TRBJ1-2*01 38.0 1929.0 CAAQETSYDKVIF_CASTQVDRPNYGYTF 17 3228 BZLF1-190-197 EBV 0.78 2156 NEG 151 3077 9 EBV BZLF1 RAKFKQLL effector memory T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-B*08:01 B2M MHCI -8393 chip0423_123076 11.33 10.65 Chip2 T1D_4 T1D TGTGCCAGCAGCTTAGGAGGGGGAGAGGGGGCCAGTGAGCAGTTCTTC CASSLGGGEGASEQFF TRBV7-6*01 TRBJ2-1*01 36.0 1994.0 _CASSLGGGEGASEQFF 10 4618 EBNA3A-193-201 EBV 0.67 1022 NEG 165 4453 9 EBV EBNA3A FLRGRAYGL effector memory T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-B*08:01 B2M MHCI -8394 chip0423_807263 12.92 6.64 Chip2 T1D_6 T1D TGTGCCAGCAGCTTGGGACAGGCCTACGAGCAGTACTTC CASSLGQAYEQYF TRBV7-8*01 TRBJ2-7*01 7.0 196.0 _CASSLGQAYEQYF 175 3877 EBNA3A-193-201 EBV 0.83 1022 NEG 163 3714 10 EBV EBNA3A FLRGRAYGL effector memory T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-B*08:01 B2M MHCI -8395 chip0423_715596 15.05 10.9 Chip2 healthy_3 healthy TGTGCCCCTGCATCAGGAGGAAGCTACATACCTACATTC CAPASGGSYIPTF TRAV24*01 TRAJ6*01 19.0 1707.0 TGTGCCAGCTGCCGGGACGGGACCTACGAGCAGTACTTC CASCRDGTYEQYF TRBV10-3*01 TRBJ2-7*01 9.0 569.0 CAPASGGSYIPTF_CASCRDGTYEQYF 10 3967 NP44-52 FLU 0.8 474 NP44-52 158 3809 12 InfluenzaA NP CTELKLSDY effector T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*01:01 B2M MHCI -8396 chip0423_822764 10.1 10.36 Chip2 T1D_5 T1D TGTGCCAGCAGCCCTCTTGGGAGCAATGAAAAACTGTTTTTT CASSPLGSNEKLFF TRAV36/DV7*01 TRAJ5*01 3.0 10.0 TGTGCCAGCAGCCCTCTTGGGAGCAATGAAAAACTGTTTTTT CASSPLGSNEKLFF TRBV7-9*01 TRBJ1-4*01 116.0 3904.0 CASSPLGSNEKLFF_CASSPLGSNEKLFF 4 4814 BZLF1-190-197 EBV 1.0 2156 NEG 155 4659 9 EBV BZLF1 RAKFKQLL effector memory T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-B*08:01 B2M MHCI -8397 chip0423_617347 9.4 7.55 Chip2 T1D_6 T1D TGTGCCAGCAGCTTGGGACAGGCCTACGAGCAGTACTTC CASSLGQAYEQYF TRBV7-8*01 TRBJ2-7*01 15.0 864.0 _CASSLGQAYEQYF 175 7125 EBNA3A-193-201 EBV 0.77 1022 EBNA3A-193-201 183 6942 8 EBV EBNA3A FLRGRAYGL effector memory T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-B*08:01 B2M MHCI -8398 chip0423_739326 5.55 9.06 Chip2 T1D_5 T1D TGCGCCAGCAGCCCCTGGGACACCTCCTACGAGCAGTACTTC CASSPWDTSYEQYF TRBV4-1*01 TRBJ2-7*01 9.0 358.0 _CASSPWDTSYEQYF 2 5128 BZLF1-190-197 EBV 0.66 2156 BZLF1-190-197 179 4949 6 EBV BZLF1 RAKFKQLL central memory T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-B*08:01 B2M MHCI -8399 chip0423_349671 -2.62 8.85 Chip2 T1D_5 T1D TGCGCCAGCAGCCAAGGGCCAGTCGAAGCTTTCTTT CASSQGPVEAFF TRBV4-1*01 TRBJ1-1*01 65.0 3686.0 _CASSQGPVEAFF 1 6023 GAD2-EAK-10 GAD65 0.74 14 GAD2-EAK-10 123 5900 2 HomoSapiens GAD2 EAKQKGFVPF Naive T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-B*08:01 B2M MHCI -8400 chip0423_80328 15.02 10.51 Chip2 healthy_3 healthy TGTGCTGTTCTCCCCTCTCCCGTCTCCCCGCTCCGCTTT CAVLPSPVSPLRF TRAV21*01 TRAJ20*01 3.0 461.0 TGTGCCAGTATCGGAAAGACCACTAGCACAGATACGCAGTATTTT CASIGKTTSTDTQYF TRBV19*01 TRBJ2-3*01 35.0 1451.0 CAVLPSPVSPLRF_CASIGKTTSTDTQYF 1 4957 NP44-52 FLU 0.63 474 NP44-52 155 4802 12 InfluenzaA NP CTELKLSDY effector T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*01:01 B2M MHCI -8401 chip0423_355043 -2.88 8.47 Chip2 T1D_6 T1D TGTGTGGTGGAGCCTTACAACTTCAACAAATTTTACTTT CVVEPYNFNKFYF TRAV12-1*01 TRAJ21*01 21.0 1632.0 TGTGCTGTGGACTATCAATACAACTTCAACAAATTTTACTTT CAVDYQYNFNKFYF TRAV2*01 TRAJ21*01 17.0 819.0 0.38 TGTGCCAGCAGCTTAGAGGGGAGCTATGGCTACACCTTC CASSLEGSYGYTF TRBV7-9*01 TRBJ1-2*01 49.0 2974.0 CVVEPYNFNKFYF_CASSLEGSYGYTF 1 8564 NP44-52 FLU 0.62 474 NEG 138 8426 2 InfluenzaA NP CTELKLSDY Naive T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*01:01 B2M MHCI -8402 chip0423_840272 10.5 7.2 Chip2 T1D_5 T1D TGTGCCAGCCTCAAGCCGGATAGCACCGGGGAGCTGTTTTTT CASLKPDSTGELFF TRBV2*01 TRBJ2-2*01 71.0 3774.0 _CASLKPDSTGELFF 2 6990 BZLF1-190-197 EBV 0.57 2156 BZLF1-190-197 156 6834 10 EBV BZLF1 RAKFKQLL effector memory T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-B*08:01 B2M MHCI -8403 chip0423_527345 -0.41 8.53 Chip2 T1D_6 T1D TGTGCTTATAGGCCACCCCCTGCAGGGAATTGACCTTT CAYRPPc?cCRELTF TRAV38-1*01 TRAJ48*01 1.0 29.0 CAYRPPc?cCRELTF_ 1 7652 PGT-178 PGT 0.59 1480 PGT-178 154 7498 4 HomoSapiens PGT LLAGIGTVPI Naive T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*02:01 B2M MHCI -8404 chip0423_667786 -1.02 6.95 Chip2 healthy_3 healthy TGTGTCTCGGCCACTGACAGCTGGGGGAAATTGCAGTTT CVSATDSWGKLQF TRAV12-1*01 TRAJ24*01 1.0 26.0 TGTGCCAGCAGTTCCCCTACTAGTCAGGGGGTCAATGAGCAGTTCTTC CASSSPTSQGVNEQFF TRBV27*01 TRBJ2-1*01 2.0 50.0 CVSATDSWGKLQF_CASSSPTSQGVNEQFF 1 7354 PGT-178 PGT 0.64 1480 PGT-178 157 7197 3 HomoSapiens PGT LLAGIGTVPI Naive T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*02:01 B2M MHCI -8405 chip0423_526542 14.18 10.07 Chip2 T1D_6 T1D TGTGCCAGCAGCGTTAGCGGGGCCCCCTACGAGCAGTACTTC CASSVSGAPYEQYF TRBV9*01 TRBJ2-7*01 15.0 701.0 _CASSVSGAPYEQYF 21 3163 EBNA3A-193-201 EBV 0.58 1022 NEG 178 2985 12 EBV EBNA3A FLRGRAYGL effector T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-B*08:01 B2M MHCI -8406 chip0423_492610 -3.51 10.32 Chip2 T1D_4 T1D TGTGCCGTGTCTAACGACTACACGCTCAGCTTT CAVSNDYTLSF TRAV12-2*01 TRAJ20*01 19.0 2019.0 TGTGCCAGCAGTTCCGTAACGGAAGCCCTCTACGAGCAGTACTTC CASSSVTEALYEQYF TRBV28*01 TRBJ2-7*01 3.0 160.0 CAVSNDYTLSF_CASSSVTEALYEQYF 1 4708 PGT-178 PGT 0.64 1480 NEG 145 4563 2 HomoSapiens PGT LLAGIGTVPI Naive T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*02:01 B2M MHCI -8407 chip0423_274103 12.13 13.31 Chip2 T1D_5 T1D TGTGCCAGCAGCTCCGGACTAGCGGGGGGCTCTCACACCGGGGAGCTGTTTTTT CASSSGLAGGSHTGELFF TRBV11-1*01 TRBJ2-2*01 43.0 996.0 _CASSSGLAGGSHTGELFF 14 2108 BZLF1-190-197 EBV 0.71 2156 NEG 160 1948 11 EBV BZLF1 RAKFKQLL effector T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-B*08:01 B2M MHCI -8408 chip0423_735482 7.11 13.08 Chip2 healthy_4 healthy TGTGCCAGTAGCACCCGTAGTGCCTACGAGCAGTACTTC CASSTRSAYEQYF TRBV19*01 TRBJ2-7*01 18.0 1163.0 _CASSTRSAYEQYF 1 4306 M1 FLU 0.68 1250 NEG 162 4144 7 InfluenzaA M1 GILGFVFTL transitional T cells between effector and memory populations PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*02:01 B2M MHCI -8409 chip0423_427512 13.49 8.16 Chip2 T1D_6 T1D TGCAGCGCCGGCAGGGACGGGACTAATGAAAAACTGTTTTTT CSAGRDGTNEKLFF TRBV29-1*01 TRBJ1-4*01 63.0 3416.0 _CSAGRDGTNEKLFF 159 2377 EBV-BLMF1 EBV 0.8 2531 NEG 174 2203 10 EBV BLMF1 GLCTLVAML effector memory T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*02:01 B2M MHCI -8410 chip0423_355065 -0.09 6.83 Chip2 T1D_6 T1D TGTGCTGGGCTGGGGTCTAACGACTACAAGCTCCGCTTT CAGLGSNDYKLRF TRAV35*01 TRAJ20*01 6.0 148.0 TGTGCCAACAGCGCGGGCCCCACAGGCGCGACGAACACCGGGGAGCTGTTTTTT CANSAGPTGATNTGELFF TRBV9*01 TRBJ2-2*01 51.0 2557.0 CAGLGSNDYKLRF_CANSAGPTGATNTGELFF 1 10200 INS-LWM-8 INS 0.42 11 NEG 137 10063 3 HomoSapiens INS LWMRLLPL Naive T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-B*08:01 B2M MHCI -8411 chip0423_782821 10.35 10.19 Chip2 healthy_4 healthy TGCAGCGTTGCCCCGGGACAGGGGCCCCTCTACACCTTC CSVAPGQGPLYTF TRBV29-1*01 TRBJ1-2*01 29.0 2227.0 _CSVAPGQGPLYTF 1 4418 BZLF1-190-197 EBV 0.44 2156 NEG 171 4247 9 EBV BZLF1 RAKFKQLL effector memory T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-B*08:01 B2M MHCI -8412 chip0423_429944 -2.68 11.65 Chip2 T1D_5 T1D TGCATCGGCCACATGGATAGCAACTATCAGTTAATCTGG CIGHMDSNYQLIW TRAV26-1*01 TRAJ33*01 17.0 1150.0 TGTGCCAGCAGCCAAGATCAGGGCGCAGGGGCTAATGGCTACACCTTC CASSQDQGAGANGYTF TRBV14*01 TRBJ1-2*01 8.0 247.0 CIGHMDSNYQLIW_CASSQDQGAGANGYTF 1 4340 GAD2-TLK-8 GAD65 0.5 11 NEG 143 4197 1 HomoSapiens GAD2 TLKKMREI Naive T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-B*08:01 B2M MHCI -8413 chip0423_415517 13.68 12.91 Chip2 T1D_4 T1D TGTGCTCTGTATAACACCGACAAGCTCATCTTT CALYNTDKLIF TRAV9-2*01 TRAJ34*01 4.0 267.0 CALYNTDKLIF_ 10 2602 EBV-BLMF1 EBV 0.75 2531 NEG 162 2440 12 EBV BLMF1 GLCTLVAML effector T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*02:01 B2M MHCI -8414 chip0423_80630 14.85 8.53 Chip2 T1D_6 T1D TGTGCCAGCAGCTTGGGACAGGCCTACGAGCAGTACTTC CASSLGQAYEQYF TRBV7-8*01 TRBJ2-7*01 11.0 865.0 _CASSLGQAYEQYF 175 3358 EBNA3A-193-201 EBV 0.67 1022 NEG 161 3197 12 EBV EBNA3A FLRGRAYGL effector T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-B*08:01 B2M MHCI -8415 chip0423_744641 5.31 9.66 Chip2 T1D_4 T1D TGTGCTGTGCTCCAGGATAGCAACTATCAGTTAATCTGG CAVLQDSNYQLIW TRAV12-2*01 TRAJ33*01 13.0 852.0 TGCGCCAGCAGTGATGACGGAATGAACACTGAAGCTTTCTTT CASSDDGMNTEAFF TRBV10-2*01 TRBJ1-1*01 89.0 3589.0 CAVLQDSNYQLIW_CASSDDGMNTEAFF 8 7462 EBV-LMP2A EBV 0.81 700 EBV-LMP2A 161 7301 6 EBV LMP2A CLGGLLTMV central memory T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*02:01 B2M MHCI -8416 chip0423_732926 7.21 11.67 Chip2 T1D_4 T1D TGCATCCTGCCTCTTGCTGGTGGTACTAGCTATGGAAAGCTGACATTT CILPLAGGTSYGKLTF TRAV26-2*01 TRAJ52*01 122.0 6356.0 TGTGCCAGCAGCTTAGGGCACGCCTACGAGCAGTACTTC CASSLGHAYEQYF TRBV7-8*01 TRBJ2-7*01 5.0 199.0 CILPLAGGTSYGKLTF_CASSLGHAYEQYF 1 6334 EBNA3A-193-201 EBV 0.97 1022 EBNA3A-193-201 151 6183 7 EBV EBNA3A FLRGRAYGL transitional T cells between effector and memory populations PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-B*08:01 B2M MHCI -8417 chip0423_615919 -1.35 6.92 Chip2 healthy_3 healthy TGTGCCAGCAGTGAAGCACGACTAGCGGGAGGGTACAATGAGCAGTTCTTC CASSEARLAGGYNEQFF TRBV2*01 TRBJ2-1*01 29.0 1255.0 _CASSEARLAGGYNEQFF 1 7768 PGT-178 PGT 0.79 1480 PGT-178 123 7645 3 HomoSapiens PGT LLAGIGTVPI Naive T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*02:01 B2M MHCI -8418 chip0423_334641 -2.01 12.74 Chip2 T1D_5 T1D TGCATCCTGAGAGACGACAACTTCAACAAATTTTACTTT CILRDDNFNKFYF TRAV26-2*01 TRAJ21*01 46.0 3330.0 TGTGCCAGCAGCCCAGCCGGGGCAAGGTTCGGCGATGAGCAGTTCTTC CASSPAGARFGDEQFF TRBV9*01 TRBJ2-1*01 2.0 146.0 CILRDDNFNKFYF_CASSPAGARFGDEQFF 1 3844 GAD2-MMI-8 GAD65 0.45 40 NEG 146 3698 1 HomoSapiens GAD2 MMIARFKM Naive T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-B*08:01 B2M MHCI -8419 chip0423_273 -1.18 9.88 Chip2 T1D_6 T1D TGTGCAATGAGCCCTTCTAACTTTGGAAATGAGAAATTAACCTTT CAMSPSNFGNEKLTF TRAV12-3*01 TRAJ48*01 32.0 1949.0 TGTGCAGCAAGAGGGTACCCATTTCAGGGAGCCCAGAAGCTGGTATTT CAARGYPFQGAQKLVF TRAV29/DV5*01 TRAJ54*01 19.0 848.0 0.27 TGTGCCAGCAGCTTAGAAGAAAGCACCGACTCTGGAAACACCATATATTTT CASSLEESTDSGNTIYF TRBV7-6*01 TRBJ1-3*01 45.0 1387.0 CAMSPSNFGNEKLTF_CASSLEESTDSGNTIYF 1 7062 PGT-178 PGT 0.81 1480 PGT-178 172 6890 3 HomoSapiens PGT LLAGIGTVPI Naive T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*02:01 B2M MHCI -8420 chip0423_502446 8.85 7.81 Chip2 T1D_5 T1D TGTGCAGCAACGGAAACCTCCTACGACAAGGTGATATTT CAATETSYDKVIF TRAV13-1*01 TRAJ50*01 14.0 1005.0 CAATETSYDKVIF_ 13 7611 BZLF1-190-197 EBV 0.64 2156 NEG 163 7448 8 EBV BZLF1 RAKFKQLL effector memory T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-B*08:01 B2M MHCI -8421 chip0423_57984 4.95 11.83 Chip2 healthy_4 healthy TGTGCAGGAGCCTCAGGAACCTACAAATACATCTTT CAGASGTYKYIF TRAV27*01 TRAJ40*01 38.0 1987.0 CAGASGTYKYIF_ 1 5347 M1 FLU 1.0 1250 NEG 154 5193 6 InfluenzaA M1 GILGFVFTL central memory T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*02:01 B2M MHCI -8422 chip0423_42776 6.91 10.88 Chip2 healthy_3 healthy _ 6746 8137 M1 FLU 0.7 1250 M1 145 7992 7 InfluenzaA M1 GILGFVFTL transitional T cells between effector and memory populations PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*02:01 B2M MHCI -8423 chip0423_801486 4.99 10.91 Chip2 T1D_6 T1D TGTGCTCCGATACAACCGCCATACAACTTCAACAAATTTTACTCT CAPIQPPYNFNKFYS TRAV35*01 TRAJ21*01 73.0 3995.0 TGTGCCAGCAGTGAATCCCCGGCCCCCGGGAATGAAAAACTGTTTTTC CASSESPAPGNEKLFF TRBV6-1*01 TRBJ1-4*01 13.0 239.0 CAPIQPPYNFNKFYS_CASSESPAPGNEKLFF 1 7526 IAPP-STN-9 IAPP 0.86 48 NEG 140 7386 6 HomoSapiens IAPP STNVGSNTY central memory T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*01:01 B2M MHCI -8424 chip0423_137812 5.63 9.34 Chip2 T1D_4 T1D TGTGCCAGCAGTTACTCAAGTACAGGGGAGTACTTC CASSYSSTGEYF TRBV6-2*01,TRBV6-3*01 TRBJ2-7*01 25.0 1709.0 _CASSYSSTGEYF 32 8449 EBV-LMP1-1 EBV 0.62 237 NEG 151 8298 6 EBV LMP1 YLLEMLWRL central memory T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*02:01 B2M MHCI -8425 chip0423_327475 -0.64 7.06 Chip2 T1D_4 T1D TGTGCCAGCAGTTTATTCGAGACAGGGGGAACCTATGGCTACACCTTC CASSLFETGGTYGYTF TRBV12-3*01,TRBV12-4*01 TRBJ1-2*01 40.0 2089.0 _CASSLFETGGTYGYTF 1 8771 PGT-178 PGT 0.68 1480 PGT-178 136 8635 3 HomoSapiens PGT LLAGIGTVPI Naive T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*02:01 B2M MHCI -8426 chip0423_26560 7.61 12.52 Chip2 healthy_4 healthy TGCAGTGCTACAGACAGGGGGGAGTCCGGGGCCAACGTCCTGACTTTC CSATDRGESGANVLTF TRBV20-1*01 TRBJ2-6*01 21.0 767.0 _CSATDRGESGANVLTF 1 3248 HCVNS4B-1807-1816 HCV 0.75 74 NEG 137 3111 7 HCV NS4B LLFNILGGWV transitional T cells between effector and memory populations PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*02:01 B2M MHCI -8427 chip0423_494164 -2.26 10.29 Chip2 T1D_4 T1D TGTGCCAGCAGTTTAGGGGCTAGGCCCTACGAGCAGTACTTC CASSLGARPYEQYF TRBV27*01 TRBJ2-7*01 28.0 1994.0 _CASSLGARPYEQYF 1 4897 GAG-77-86 HIV 0.43 15 NEG 148 4749 4 HIV-1 GAG SLYNTVATLY Naive T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*02:01 B2M MHCI -8428 chip0423_375430 10.85 7.48 Chip2 T1D_5 T1D TGTGCCGTGAATCCCGAAGGAGCCAGACTCATGTTT CAVNPEGARLMF TRAV8-1*01 TRAJ31*01 9.0 825.0 TGTGCCAGCAGCGTCCCGGCCACAGGGGGGACCGGGGAGCTGTTTTTT CASSVPATGGTGELFF TRBV9*01 TRBJ2-2*01 21.0 1103.0 CAVNPEGARLMF_CASSVPATGGTGELFF 1 5235 BZLF1-190-197 EBV 0.41 2156 BZLF1-190-197 143 5092 10 EBV BZLF1 RAKFKQLL effector memory T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-B*08:01 B2M MHCI -8429 chip0423_744989 14.35 10.03 Chip2 T1D_5 T1D TGTGCTGGGCAATGGGTTCTGCAAGGCAACTGACCTTT CAGQWVc?tARQLTF TRAV35*01 TRAJ22*01 1.0 34.0 TGTGCCAGCAGCTTAGTGGACAGGCCCTACGAGCAGTACTTC CASSLVDRPYEQYF TRBV7-9*01 TRBJ2-7*01 38.0 2315.0 CAGQWVc?tARQLTF_CASSLVDRPYEQYF 1 4235 BZLF1-190-197 EBV 0.42 2156 NEG 179 4056 12 EBV BZLF1 RAKFKQLL effector T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-B*08:01 B2M MHCI -8430 chip0423_525429 14.33 9.9 Chip2 T1D_5 T1D TGTGCAATGAGGGCCATTGAGGGGGCAAACAACCTCTTCTTT CAMRAIEGANNLFF TRAV14/DV4*01 TRAJ36*01 32.0 2035.0 TGCGCCAGCAGCCTCAGTTCGGGGGGCCGTGGCGAGCAGCACTTC CASSLSSGGRGEQHF TRBV4-1*01 TRBJ2-7*01 3.0 156.0 CAMRAIEGANNLFF_CASSLSSGGRGEQHF 1 2795 BZLF1-190-197 EBV 0.62 2156 NEG 164 2631 12 EBV BZLF1 RAKFKQLL effector T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-B*08:01 B2M MHCI -8431 chip0423_242591 7.95 10.62 Chip2 T1D_5 T1D TGTGCCAGCAGCCCTACAGGGGGCGCACGGGGAGCTGTTTTTT CASSPTG??gAHGELFF TRBV7-3*01 TRBJ2-2*01 15.0 695.0 _CASSPTG??gAHGELFF 1 4840 BZLF1-190-197 EBV 0.5 2156 NEG 172 4668 7 EBV BZLF1 RAKFKQLL transitional T cells between effector and memory populations PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-B*08:01 B2M MHCI -8432 chip0423_579949 15.64 9.88 Chip2 T1D_6 T1D TGCATCCTCCCACTTGCTGGTGGTCCTCGCTATGGAAAGCTGACATTT CILPLAGGPRYGKLTF TRAV26-2*01 TRAJ52*01 3.0 80.0 TGTGCCAGCAGCTTGGGACAGGCCTACGAGCAGTACTTC CASSLGQAYEQYF TRBV7-8*01 TRBJ2-7*01 12.0 415.0 CILPLAGGPRYGKLTF_CASSLGQAYEQYF 2 5000 EBNA3A-193-201 EBV 0.61 1022 NEG 158 4842 12 EBV EBNA3A FLRGRAYGL effector T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-B*08:01 B2M MHCI -8433 chip0423_649391 -3.33 8.94 Chip2 T1D_4 T1D TGTGCCAGCAGGATCGCCGGGACGTCGTACGAGCAGTACTTC CASRIAGTSYEQYF TRBV28*01 TRBJ2-7*01 1.0 60.0 _CASRIAGTSYEQYF 1 6426 MART1-A28L MART1 0.67 84 NEG 127 6299 2 HomoSapiens MART1 ALGIGILTV Naive T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*02:01 B2M MHCI -8434 chip0423_592121 11.74 9.69 Chip2 T1D_4 T1D _ 6746 3867 EBNA3A-158-166 EBV 0.54 444 NEG 144 3723 9 EBV EBNA3A QAKWRLQTL effector memory T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-B*08:01 B2M MHCI -8435 chip0423_141638 8.6 8.66 Chip2 T1D_5 T1D TGTGCAGCAACGGAAACCTCCTACGACAAGGTGATATTT CAATETSYDKVIF TRAV13-1*01 TRAJ50*01 25.0 2039.0 TGTGCCAGCAGTGAAACGGGCCTACTGAACTATGGCTACACCTTC CASSETGLLNYGYTF TRBV25-1*01 TRBJ1-2*01 1.0 27.0 CAATETSYDKVIF_CASSETGLLNYGYTF 1 5908 BZLF1-190-197 EBV 0.82 2156 BZLF1-190-197 165 5743 8 EBV BZLF1 RAKFKQLL effector memory T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-B*08:01 B2M MHCI -8436 chip0423_807145 11.65 12.82 Chip2 T1D_5 T1D TGTGCTGGAAACGCAGGGGCTGGAGGCTTCAAAACTATCTTT CAGNAGAGGFKTIF TRAV27*01 TRAJ9*01 22.0 534.0 CAGNAGAGGFKTIF_ 1 2404 BZLF1-190-197 EBV 0.6 2156 NEG 156 2248 11 EBV BZLF1 RAKFKQLL effector T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-B*08:01 B2M MHCI -8437 chip0423_548167 6.0 12.81 Chip2 T1D_6 T1D _ 6746 5827 NP380-388 FLU 0.69 60 NP380-388 176 5651 7 InfluenzaA NP ELRSRYWAI transitional T cells between effector and memory populations PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-B*08:01 B2M MHCI -8438 chip0423_2088 -3.2 9.39 Chip2 T1D_5 T1D _ 6746 5371 EBNA3A-158-166 EBV 0.7 444 EBNA3A-158-166 149 5222 2 EBV EBNA3A QAKWRLQTL Naive T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-B*08:01 B2M MHCI -8439 chip0423_870278 6.28 14.3 Chip2 healthy_3 healthy TGCAGTGCCGATTCCTACCGGGACATTGATAACTATGGCTACACCTTC CSADSYRDIDNYGYTF TRBV20-1*01 TRBJ1-2*01 15.0 739.0 _CSADSYRDIDNYGYTF 8 5438 NP44-52 FLU 0.73 474 NP44-52 154 5284 7 InfluenzaA NP CTELKLSDY transitional T cells between effector and memory populations PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*01:01 B2M MHCI -8440 chip0423_828904 -0.85 10.01 Chip2 T1D_6 T1D TGTGCCAGTAGTATCTTGGCAGGGAGCACAGATACGCAGTATTTT CASSILAGSTDTQYF TRBV19*01 TRBJ2-3*01 25.0 1394.0 _CASSILAGSTDTQYF 1 8414 ZNT8-115-123 ZNT8 0.47 74 NEG 148 8266 3 HomoSapiens ZNT8 LLSLFSLWL Naive T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*02:01 B2M MHCI -8441 chip0423_857970 -4.16 9.92 Chip2 T1D_6 T1D TGTGCCAGTAGTATAGGTTTAGCGGGGGGTGACAATGAGCAGTTCTTC CASSIGLAGGDNEQFF TRBV19*01 TRBJ2-1*01 75.0 2723.0 _CASSIGLAGGDNEQFF 1 6355 PGT-178 PGT 0.76 1480 PGT-178 150 6205 2 HomoSapiens PGT LLAGIGTVPI Naive T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*02:01 B2M MHCI -8442 chip0423_732979 13.35 10.96 Chip2 T1D_5 T1D TGTGCAGCAAGTGAAACCTCCTACGACAAGGTGATATTT CAASETSYDKVIF TRAV13-1*01 TRAJ50*01 39.0 2339.0 TGTGCAGCAAGCGTTAGAAAACAATGACATGCGCTTT CAASVR??aNNDMRF TRAV13-1*01 TRAJ43*01 27.0 2002.0 0.33 TGTGCCAGCAGCCCTCTCGGGGAGAGGCACACTGAAGCTTTCTTT CASSPLGERHTEAFF TRBV7-9*01 TRBJ1-1*01 61.0 2351.0 CAASETSYDKVIF_CASSPLGERHTEAFF 1 2938 BZLF1-190-197 EBV 0.71 2156 NEG 167 2771 9 EBV BZLF1 RAKFKQLL effector memory T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-B*08:01 B2M MHCI -8443 chip0423_145661 14.95 10.87 Chip2 T1D_5 T1D TGTGCAGAGATGGAAACCTCCTACGACAAGGTGATATTT CAEMETSYDKVIF TRAV13-2*01 TRAJ50*01 101.0 7924.0 TGTGCCAGCAGCTCCTTAAGCGGGGGGGCAGGAAATGAGCAGTTCTTC CASSSLSGGAGNEQFF TRBV7-9*01 TRBJ2-1*01 62.0 2772.0 CAEMETSYDKVIF_CASSSLSGGAGNEQFF 27 3373 BZLF1-190-197 EBV 0.42 2156 NEG 148 3225 12 EBV BZLF1 RAKFKQLL effector T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-B*08:01 B2M MHCI -8444 chip0423_106206 5.91 12.31 Chip2 T1D_4 T1D TGTGCCTTCGCGCGAGGTGCTGACGGACTCACCTTT CAFARGADGLTF TRAV24*01 TRAJ45*01 17.0 2032.0 CAFARGADGLTF_ 1 6213 NP30-38 FLU 0.5 72 NEG 143 6070 7 InfluenzaA NP RPIIRPATL transitional T cells between effector and memory populations PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-B*08:01 B2M MHCI -8445 chip0423_192201 9.34 8.3 Chip2 T1D_5 T1D TGTGCCAGCACCCTCCTTGGCGCCACAGATACGCAGTATTTT CASTLLGATDTQYF TRBV7-9*01 TRBJ2-3*01 55.0 3444.0 _CASTLLGATDTQYF 1 7115 BZLF1-190-197 EBV 0.67 2156 BZLF1-190-197 151 6964 8 EBV BZLF1 RAKFKQLL effector memory T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-B*08:01 B2M MHCI -8446 chip0423_845811 12.11 12.1 Chip2 T1D_5 T1D TGCATCCTGCGCGAAACCTCCTACGACAAGGTGATATTT CILRETSYDKVIF TRAV26-2*01 TRAJ50*01 31.0 1804.0 TGTGCCAGCAACCCACTAGGCTTTCAGGACACCGGGGAGCTGTTTTTT CASNPLGFQDTGELFF TRBV12-3*01,TRBV12-4*01 TRBJ2-2*01 70.0 3002.0 CILRETSYDKVIF_CASNPLGFQDTGELFF 1 2682 BZLF1-190-197 EBV 0.67 2156 NEG 165 2517 10 EBV BZLF1 RAKFKQLL effector memory T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-B*08:01 B2M MHCI -8447 chip0423_22124 7.43 12.13 Chip2 T1D_5 T1D TGTGCAGCGGCGGAAACCTCCTACGACAAGGTGATATTT CAAAETSYDKVIF TRAV13-1*01 TRAJ50*01 32.0 2299.0 CAAAETSYDKVIF_ 32 5007 BZLF1-190-197 EBV 1.0 2156 BZLF1-190-197 138 4869 7 EBV BZLF1 RAKFKQLL transitional T cells between effector and memory populations PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-B*08:01 B2M MHCI -8448 chip0423_873420 9.58 10.31 Chip2 healthy_4 healthy _ 6746 3806 EBV-BRLF1 EBV 0.81 1264 NEG 130 3676 9 EBV BRLF1 YVLDHLIVV effector memory T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*02:01 B2M MHCI -8449 chip0423_869616 10.35 11.18 Chip2 T1D_5 T1D TGTGCAGCACGGGAAACCTCCTACGACAAGGTGATATTT CAARETSYDKVIF TRAV13-1*01 TRAJ50*01 2.0 30.0 TGTGCCAGCAGCTTAGTACAGGGCTACGAGCAGTACTTC CASSLVQGYEQYF TRBV7-9*01 TRBJ2-7*01 5.0 548.0 CAARETSYDKVIF_CASSLVQGYEQYF 4 4387 BZLF1-190-197 EBV 0.88 2156 NEG 152 4235 9 EBV BZLF1 RAKFKQLL effector memory T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-B*08:01 B2M MHCI -8450 chip0423_733242 -2.72 13.1 Chip2 T1D_4 T1D _ 6746 4244 NP44-52 FLU 0.73 474 NEG 137 4107 1 InfluenzaA NP CTELKLSDY Naive T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*01:01 B2M MHCI -8451 chip0423_661713 13.12 11.27 Chip2 healthy_4 healthy TGGGTGGGGAACCACTCTAGAGGCAAAGCTGCGGGCAGCAAGGTGACTTTG WVGNHSRGKAAGSKVTL TRAV12-1*01 TRAJ17*01 12.0 161.0 TGCGCCAGCAGCCCCGGGACTAGCGGGGGGGGGCCCGGGGAGCTGTTTTTT CASSPGTSGGGPGELFF TRBV4-1*01 TRBJ2-2*01 1.0 49.0 WVGNHSRGKAAGSKVTL_CASSPGTSGGGPGELFF 1 3054 BZLF1-190-197 EBV 0.8 2156 NEG 151 2903 9 EBV BZLF1 RAKFKQLL effector memory T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-B*08:01 B2M MHCI -8452 chip0423_189456 -1.73 8.35 Chip2 T1D_5 T1D TGTGCTACGGACTGGGGAGCCCAGAAGCTGGTATTT CATDWGAQKLVF TRAV17*01 TRAJ54*01 1.0 50.0 TGTGCCAGCAGCTTAGTAGGCGACAGGCTCTATGGCTACACCTTC CASSLVGDRLYGYTF TRBV7-9*01 TRBJ1-2*01 13.0 399.0 CATDWGAQKLVF_CASSLVGDRLYGYTF 1 8787 IAPP-ILK-8 IAPP 0.64 20 NEG 139 8648 3 HomoSapiens IAPP ILKLQVFL Naive T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-B*08:01 B2M MHCI -8453 chip0423_237662 11.34 6.92 Chip2 T1D_5 T1D TGTGCAGCAACGGAAACCTCCTACGACAAGGTGATATTT CAATETSYDKVIF TRAV13-1*01 TRAJ50*01 4.0 285.0 TGTGCCAGCAGTCCCCCGGGGGGAAATGAAAAACTGTTTTTT CASSPPGGNEKLFF TRAV9-2*01 TRAJ5*01 4.0 10.0 0.4 TGTGCCAGCAGTCCCCCGGGGAGAAATGAAAAACTGTTTTTT CASSPPGRNEKLFF TRBV12-3*01,TRBV12-4*01 TRBJ1-4*01 151.0 5505.0 CAATETSYDKVIF_CASSPPGRNEKLFF 34 4353 BZLF1-190-197 EBV 0.73 2156 BZLF1-190-197 156 4197 6 EBV BZLF1 RAKFKQLL central memory T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-B*08:01 B2M MHCI -8454 chip0423_833380 -4.15 12.24 Chip2 T1D_4 T1D TGTGCCAGTAGCCCCCCGAACACCGGGGAGCTGTTTTTT CASSPPNTGELFF TRBV19*01 TRBJ2-2*01 13.0 687.0 _CASSPPNTGELFF 1 4632 EBV-BRLF1 EBV 0.67 1264 NEG 143 4489 1 EBV BRLF1 YVLDHLIVV Naive T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*02:01 B2M MHCI -8455 chip0423_481941 13.19 7.31 Chip2 T1D_4 T1D TGTGCCAGCAGCTTAGCGGTCGGAGAAGGGCCCCAGCATTTT CASSLAVGEGPQHF TRBV7-9*01 TRBJ1-5*01 53.0 1924.0 _CASSLAVGEGPQHF 113 4552 BZLF1-190-197 EBV 0.76 2156 BZLF1-190-197 178 4374 10 EBV BZLF1 RAKFKQLL effector memory T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-B*08:01 B2M MHCI -8456 chip0423_438958 7.5 12.79 Chip2 T1D_5 T1D TGTGCCAGCCAACTAGCGGGAGGCACCGGGGAGCTGTTTTTT CASQLAGGTGELFF TRBV24-1*01 TRBJ2-2*01 13.0 768.0 _CASQLAGGTGELFF 69 3373 BZLF1-190-197 EBV 0.67 2156 NEG 142 3231 7 EBV BZLF1 RAKFKQLL transitional T cells between effector and memory populations PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-B*08:01 B2M MHCI -8457 chip0423_391981 9.47 10.57 Chip2 T1D_4 T1D TGTGCCAGCAGCTTAGCGGTCGGAGAAGGGCCCCAGCATTTT CASSLAVGEGPQHF TRBV7-9*01 TRBJ1-5*01 32.0 1170.0 _CASSLAVGEGPQHF 113 5676 BZLF1-190-197 EBV 0.88 2156 BZLF1-190-197 162 5514 9 EBV BZLF1 RAKFKQLL effector memory T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-B*08:01 B2M MHCI -8458 chip0423_155046 12.55 6.91 Chip2 T1D_6 T1D TGCATCCTCCCACTTGCTGGTGGTACTAGCTATGGAAAGCTGACATTT CILPLAGGTSYGKLTF TRAV26-2*01 TRAJ52*01 39.0 1343.0 TGTGCCAGCAGCTTGGGACAGGCCTACGAGCAGTACTTC CASSLGQAYEQYF TRBV7-8*01 TRBJ2-7*01 24.0 1622.0 CILPLAGGTSYGKLTF_CASSLGQAYEQYF 308 5309 EBNA3A-193-201 EBV 0.72 1022 NEG 157 5152 10 EBV EBNA3A FLRGRAYGL effector memory T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-B*08:01 B2M MHCI -8459 chip0423_382712 11.43 6.77 Chip2 T1D_6 T1D TGTGCCAGCAGCTCCAGGACCGGGACAAAAAACACTGAAGCTTTCTTT CASSSRTGTKNTEAFF TRBV7-2*01 TRBJ1-1*01 59.0 1492.0 _CASSSRTGTKNTEAFF 2 5772 NP140-148 FLU 0.79 102 NEG 177 5595 10 InfluenzaA NP HSNLNDATY effector memory T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*01:01 B2M MHCI -8460 chip0423_296772 -0.05 8.02 Chip2 T1D_5 T1D TGTGCCTTCCGGATTTCTTCTGGTTCTGCAAGGCAACTGACCTTT CAFRISSGSARQLTF TRAV24*01 TRAJ22*01 27.0 1450.0 TGTGCCAGCAGCGTAGAATCCGGGGGGGCTTTCACCCCTCCACTTT CASSVESgg??ggGLSPLHF TRBV9*01 TRBJ1-6*01 29.0 1316.0 CAFRISSGSARQLTF_CASSVESgg??ggGLSPLHF 1 11052 GAD2-TLK-8 GAD65 0.79 11 NEG 146 10906 4 HomoSapiens GAD2 TLKKMREI Naive T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-B*08:01 B2M MHCI -8461 chip0423_482974 6.31 13.8 Chip2 healthy_3 healthy TGTGCCAGCAGCTTGTGGTACAGGGTGGAGACCCAGTACTTC CASSLWYRVETQYF TRBV5-6*01 TRBJ2-5*01 32.0 1565.0 _CASSLWYRVETQYF 4 4886 NP44-52 FLU 0.7 474 NP44-52 140 4746 7 InfluenzaA NP CTELKLSDY transitional T cells between effector and memory populations PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*01:01 B2M MHCI -8462 chip0423_387011 15.09 9.65 Chip2 T1D_5 T1D TGTGCAGCGCCTGAAACCTCCTACGACAAGGTGATATTT CAAPETSYDKVIF TRAV13-1*01 TRAJ50*01 20.0 2066.0 TGTGCCAGCAGCTTATTAGGGGAGCAGAATTCACCCCTCCACTTT CASSLLGEQNSPLHF TRBV7-9*01 TRBJ1-6*01 36.0 1228.0 CAAPETSYDKVIF_CASSLLGEQNSPLHF 4 3179 BZLF1-190-197 EBV 1.0 2156 NEG 157 3022 12 EBV BZLF1 RAKFKQLL effector T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-B*08:01 B2M MHCI -8463 chip0423_267431 6.38 10.32 Chip2 T1D_5 T1D TGTGCAGACATGGAAACCTCCTACGACAAGGTGATATTT CADMETSYDKVIF TRAV13-1*01 TRAJ50*01 3.0 316.0 CADMETSYDKVIF_ 1 4729 BZLF1-190-197 EBV 0.7 2156 BZLF1-190-197 170 4559 6 EBV BZLF1 RAKFKQLL central memory T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-B*08:01 B2M MHCI -8464 chip0423_721164 12.58 13.07 Chip2 T1D_5 T1D TGTGCTGCTTCAGTAACCCCCGACGACTAAGCGATATTA CAASVTPDD*AIL TRAV13-1*01 TRAJ50*01 5.0 316.0 TGTGCCAGCAGTCCCCCGGGGAGAAATGAAAAACTGTTTTTT CASSPPGRNEKLFF TRBV12-3*01,TRBV12-4*01 TRBJ1-4*01 62.0 2296.0 CAASVTPDD*AIL_CASSPPGRNEKLFF 1 1873 BZLF1-190-197 EBV 0.88 2156 NEG 154 1719 11 EBV BZLF1 RAKFKQLL effector T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-B*08:01 B2M MHCI -8465 chip0423_577967 -2.73 7.73 Chip2 T1D_6 T1D TGTGCCATCAGTGATGACCGACAGGGCCTGGGGCAGTACTTC CAISDDRQGLGQYF TRBV10-3*01 TRBJ2-7*01 8.0 310.0 _CAISDDRQGLGQYF 1 7408 ZNT8-145-153 ZNT8 0.54 14 ZNT8-145-153 153 7255 3 HomoSapiens ZNT8 LLSILCIWV Naive T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*02:01 B2M MHCI -8466 chip0423_538757 14.59 11.13 Chip2 T1D_5 T1D TGTGCAGCAAGTGAGACCTCCTACGACAAGGTGATATTT CAASETSYDKVIF TRAV13-1*01 TRAJ50*01 20.0 2018.0 CAASETSYDKVIF_ 51 3635 BZLF1-190-197 EBV 0.4 2156 NEG 138 3497 12 EBV BZLF1 RAKFKQLL effector T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-B*08:01 B2M MHCI -8467 chip0423_211418 10.87 8.89 Chip2 T1D_5 T1D TGTGCAGCTCGGGAAACCTCCTACGACAAGGTGATATTT CAARETSYDKVIF TRAV13-1*01 TRAJ50*01 42.0 3081.0 TGTGCCAGCAGCTCCCTGGGGGACAGAGAAGAGACCCAGTACTTC CASSSLGDREETQYF TRBV7-9*01 TRBJ2-5*01 96.0 4250.0 CAARETSYDKVIF_CASSSLGDREETQYF 1 5257 BZLF1-190-197 EBV 0.73 2156 BZLF1-190-197 141 5116 10 EBV BZLF1 RAKFKQLL effector memory T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-B*08:01 B2M MHCI -8468 chip0423_848594 10.5 10.97 Chip2 T1D_5 T1D TGTGCAGCAAGGGAAACCTCCTACGACAAGGTGATATTT CAARETSYDKVIF TRAV13-1*01 TRAJ50*01 21.0 2042.0 TGTGCCAGCAGCCCGTTGGGCACAGCCGACTCTGGAAAACACCATATATTT CASSPLGTADSGKHHIF TRBV11-1*01 TRBJ1-3*01 24.0 898.0 CAARETSYDKVIF_CASSPLGTADSGKHHIF 1 5606 BZLF1-190-197 EBV 0.79 2156 BZLF1-190-197 155 5451 9 EBV BZLF1 RAKFKQLL effector memory T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-B*08:01 B2M MHCI -8469 chip0423_273508 7.47 12.4 Chip2 T1D_6 T1D TGCGCCAGCAGCCAATGGGACAATCAGCCCCAGCATTTT CASSQWDNQPQHF TRBV4-1*01 TRBJ1-5*01 19.0 650.0 _CASSQWDNQPQHF 1 5850 INS-WMR-8 INS 0.71 17 INS-WMR-8 169 5681 7 HomoSapiens INS WMRLLPLL transitional T cells between effector and memory populations PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-B*08:01 B2M MHCI -8470 chip0423_56340 -2.54 7.8 Chip2 healthy_4 healthy TGTGCCAGCAGCGATGGGACTAGCGGGTTGAATGAGCAGTTCTTC CASSDGTSGLNEQFF TRBV7-2*01 TRBJ2-1*01 21.0 1150.0 _CASSDGTSGLNEQFF 1 6537 PGT-178 PGT 0.78 1480 PGT-178 140 6397 2 HomoSapiens PGT LLAGIGTVPI Naive T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*02:01 B2M MHCI -8471 chip0423_230112 -1.9 11.09 Chip2 T1D_6 T1D TGTGCCGGCCCCCCGCTCTCTTCTGGTTCTGCCAGGCAAATGGCCTGT CAGPPLSSGSARQMAC TRAV27*01 TRAJ22*01 3.0 139.0 CAGPPLSSGSARQMAC_ 1 5465 NP413-421 FLU 0.77 16 NEG 149 5316 3 InfluenzaA NP ALKCKGFHV Naive T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-B*08:01 B2M MHCI -8472 chip0423_379217 14.64 8.22 Chip2 T1D_5 T1D TGTGCCAGCAGCTTCTTACGGAACAATGAGCAGTTCTTC CASSFLRNNEQFF TRBV7-9*01 TRBJ2-1*01 16.0 1243.0 _CASSFLRNNEQFF 1 3095 BZLF1-190-197 EBV 0.4 2156 NEG 169 2926 12 EBV BZLF1 RAKFKQLL effector T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-B*08:01 B2M MHCI -8473 chip0423_496940 -1.11 10.82 Chip2 T1D_6 T1D TGTGCCGTGAATCCTGACAGCTGGGGGAAATTGCAGTTT CAVNPDSWGKLQF TRAV12-2*01 TRAJ24*01 7.0 725.0 TGTGCCAGCGGGACTAGCCGACAAGAGACCCAGTACTTC CASGTSRQETQYF TRBV28*01 TRBJ2-5*01 16.0 811.0 CAVNPDSWGKLQF_CASGTSRQETQYF 1 5165 GAD2-TLK-8 GAD65 0.98 11 GAD2-TLK-8 161 5004 3 HomoSapiens GAD2 TLKKMREI Naive T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-B*08:01 B2M MHCI -8474 chip0423_12354 13.29 9.28 Chip2 T1D_6 T1D TGTGCAGCAAGCAAGATAGCGTACGCGGTCCTGACAGACTCACCTTT CAASKIAta?RGPDRLTF TRAV23/DV6*01 TRAJ45*01 20.0 649.0 TGTGCCAGCAGCTTGGGACAGGCCTACGAGCAGTACTTC CASSLGQAYEQYF TRBV7-8*01 TRBJ2-7*01 10.0 480.0 CAASKIAta?RGPDRLTF_CASSLGQAYEQYF 1 4059 EBNA3A-193-201 EBV 0.76 1022 NEG 158 3901 12 EBV EBNA3A FLRGRAYGL effector T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-B*08:01 B2M MHCI -8475 chip0423_727860 11.98 8.79 Chip2 T1D_5 T1D _ 6746 2626 BZLF1-190-197 EBV 1.0 2156 NEG 157 2469 10 EBV BZLF1 RAKFKQLL effector memory T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-B*08:01 B2M MHCI -8476 chip0423_476851 11.11 10.81 Chip2 T1D_4 T1D TGTGCCAGCAGCTTAGCGGTCGGAGAAGGGCCCCAGCATTTT CASSLAVGEGPQHF TRBV7-9*01 TRBJ1-5*01 73.0 3852.0 _CASSLAVGEGPQHF 113 6008 BZLF1-190-197 EBV 0.93 2156 BZLF1-190-197 143 5865 9 EBV BZLF1 RAKFKQLL effector memory T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-B*08:01 B2M MHCI -8477 chip0423_25618 9.34 9.03 Chip2 T1D_5 T1D TGTGCAGCAACGGAAACCTCCTACGACAAGGTGATATTT CAATETSYDKVIF TRAV13-1*01 TRAJ50*01 31.0 2027.0 CAATETSYDKVIF_ 13 7455 BZLF1-190-197 EBV 0.6 2156 NEG 158 7297 8 EBV BZLF1 RAKFKQLL effector memory T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-B*08:01 B2M MHCI -8478 chip0423_800824 14.13 9.87 Chip2 T1D_6 T1D TGCATCGCCGTTACCTCGTCCCGGTAACCAGTTCTATTTT CIAVTStc??ccGNQFYF TRAV26-1*01 TRAJ49*01 21.0 2000.0 TGCAGCGCCGGCAGGGACGGGACTAATGAAAAACTGTTTTTT CSAGRDGTNEKLFF TRBV29-1*01 TRBJ1-4*01 116.0 5995.0 CIAVTStc??ccGNQFYF_CSAGRDGTNEKLFF 6 4379 EBV-BLMF1 EBV 1.0 2531 NEG 176 4203 12 EBV BLMF1 GLCTLVAML effector T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*02:01 B2M MHCI -8479 chip0423_33539 -1.54 10.4 Chip2 T1D_6 T1D TGTGCAGCAAGTATGGATAATGCAGGCAACATGCTCACCTTT CAASMDNAGNMLTF TRAV13-1*01 TRAJ39*01 39.0 2010.0 TGTGCCAGCAGCTCTAGCGGGGGGAAGAGCTACAATGAGCAGTTCTTC CASSSSGGKSYNEQFF TRBV7-8*01 TRBJ2-1*01 14.0 543.0 CAASMDNAGNMLTF_CASSSSGGKSYNEQFF 1 7783 PREINS-6-14 INS 0.73 20 PREINS-6-14 149 7634 3 HomoSapiens PREINS RLLPLLALL Naive T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*02:01 B2M MHCI -8480 chip0423_706767 6.15 12.92 Chip2 T1D_4 T1D TGTGTGGTGAACATCGGCGGAGGAAGCCAAGAAAATCTCATCTTT CVVNIGGGSQENLIF TRAV12-1*01 TRAJ42*01 63.0 1994.0 TGTGCCAGTAGTATTAGGAGCAGCAATGAGCAGTTCTTC CASSIRSSNEQFF TRBV19*01 TRBJ2-1*01 32.0 2104.0 CVVNIGGGSQENLIF_CASSIRSSNEQFF 1 4115 M1 FLU 0.6 1250 NEG 137 3978 7 InfluenzaA M1 GILGFVFTL transitional T cells between effector and memory populations PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*02:01 B2M MHCI -8481 chip0423_119576 -2.91 12.41 Chip2 T1D_6 T1D TGTGCTCTGAGTGAGGCCGCCCAGTGGACCGGTAACCAGTTCTGTTTT CALSEAAQWTGNQFCF TRAV19*01 TRAJ49*01 52.0 2822.0 TGTGCCAGCAGCTCGGCAGGGGGAATCGCCTACAATGAGCAGTTCTTC CASSSAGGIAYNEQFF TRBV5-5*01 TRBJ2-1*01 17.0 633.0 CALSEAAQWTGNQFCF_CASSSAGGIAYNEQFF 1 4408 PTPRN-180-188 PTPRN 0.54 18 NEG 163 4245 1 HomoSapiens PTPRN LLPPLLEHL Naive T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*02:01 B2M MHCI -8482 chip0423_696395 13.16 11.61 Chip2 T1D_4 T1D TGTGCAGCAATGGAAACCTCCTACGACAAGGTGATATTT CAAMETSYDKVIF TRAV13-1*01 TRAJ50*01 4.0 173.0 CAAMETSYDKVIF_ 7 3249 BZLF1-190-197 EBV 0.75 2156 NEG 145 3104 9 EBV BZLF1 RAKFKQLL effector memory T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-B*08:01 B2M MHCI -8483 chip0423_472681 -2.41 11.02 Chip2 T1D_6 T1D TGTGCAATGGGCAAATCTAACTTTGGAAATGAGAAATTAACCTTT CAMGKSNFGNEKLTF TRAV12-3*01 TRAJ48*01 52.0 2075.0 TGTGCCAGCAGACCCACCACGGTTTTCAGGGAGGGAGAGACCCAGTACTTC CASRPTTVFREGETQYF TRBV28*01 TRBJ2-5*01 25.0 1142.0 CAMGKSNFGNEKLTF_CASRPTTVFREGETQYF 1 4935 PGT-178 PGT 0.6 1480 PGT-178 134 4801 3 HomoSapiens PGT LLAGIGTVPI Naive T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*02:01 B2M MHCI -8484 chip0423_181797 -1.57 7.17 Chip2 healthy_3 healthy TGTGCCACTTCGGCAGGAACTGCTCTGATCTTT CATSAGTALIF TRAV12-1*01 TRAJ15*01 19.0 1702.0 TGTGCCAGCAGTTTTCGGTGAGATTGCCGGGGAGCTGTTTTTT CASSFR*??gIAGELFF TRBV27*01 TRBJ2-2*01 7.0 533.0 CATSAGTALIF_CASSFR*??gIAGELFF 1 7898 PGT-178 PGT 0.43 1480 NEG 117 7781 3 HomoSapiens PGT LLAGIGTVPI Naive T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*02:01 B2M MHCI -8485 chip0423_865234 13.86 12.89 Chip2 T1D_5 T1D TGTGCAATGAGAGAGGGGGAGTCCAGTGCTTCCAAGATAATCTTT CAMREGESSASKIIF TRAV14/DV4*01 TRAJ3*01 11.0 375.0 TGCAGCGTTGGAACAAGCTATGGCTACACCTTC CSVGTSYGYTF TRBV29-1*01 TRBJ1-2*01 59.0 5488.0 CAMREGESSASKIIF_CSVGTSYGYTF 1 2580 BZLF1-190-197 EBV 0.83 2156 NEG 159 2421 12 EBV BZLF1 RAKFKQLL effector T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-B*08:01 B2M MHCI -8486 chip0423_103569 7.71 10.5 Chip2 healthy_3 healthy TGTGCTGTGGACACCGCCACGCTCATCTTT CAVDTATLIF TRAV21*01 TRAJ34*01 19.0 1947.0 TGTGCCAGCACCCTCTCCAGCTCCTACGAGCAGTACTTC CASTLSSSYEQYF TRBV12-3*01,TRBV12-4*01 TRBJ2-7*01 22.0 1342.0 CAVDTATLIF_CASTLSSSYEQYF 1 6122 NP44-52 FLU 0.57 474 NP44-52 161 5961 7 InfluenzaA NP CTELKLSDY transitional T cells between effector and memory populations PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*01:01 B2M MHCI -8487 chip0423_480615 6.89 12.16 Chip2 healthy_3 healthy TGCGCCAGCAGCCAAGTTGGACTAGCGGCAACTAGCACAGATACGCAGTATTTT CASSQVGLAATSTDTQYF TRBV4-1*01 TRBJ2-3*01 7.0 127.0 _CASSQVGLAATSTDTQYF 1 5360 NP44-52 FLU 0.82 474 NEG 132 5228 7 InfluenzaA NP CTELKLSDY transitional T cells between effector and memory populations PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*01:01 B2M MHCI -8488 chip0423_384224 11.73 7.56 Chip2 T1D_4 T1D TGCGCCAGCAGCTTGGAGCTGGGGCTTCCCTACGAGCAGTACTTC CASSLELGLPYEQYF TRBV5-1*01 TRBJ2-7*01 76.0 4666.0 _CASSLELGLPYEQYF 8 5239 EBNA3A-158-166 EBV 0.92 444 NEG 172 5067 10 EBV EBNA3A QAKWRLQTL effector memory T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-B*08:01 B2M MHCI -8489 chip0423_607977 11.35 10.98 Chip2 T1D_4 T1D TGTGCCAGCAGCTTAGCGGTCGGAGAAGGGCCCCAGCATTTT CASSLAVGEGPQHF TRBV7-9*01 TRBJ1-5*01 54.0 2106.0 _CASSLAVGEGPQHF 113 3931 BZLF1-190-197 EBV 1.0 2156 BZLF1-190-197 165 3766 9 EBV BZLF1 RAKFKQLL effector memory T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-B*08:01 B2M MHCI -8490 chip0423_168343 13.34 6.66 Chip2 T1D_4 T1D TGCATCCTCCCGTTGGCTGGTGGTACTAGCCATGGAAAGCTGACATTT CILPLAGGTSHGKLTF TRAV26-2*01 TRAJ52*01 23.0 1187.0 TGTGCCAGCAGCCAAGGACAGGCCTACGAGCAGTACTTC CASSQGQAYEQYF TRBV7-8*01 TRBJ2-7*01 43.0 1743.0 CILPLAGGTSHGKLTF_CASSQGQAYEQYF 1 4608 EBNA3A-193-201 EBV 0.92 1022 EBNA3A-193-201 178 4430 10 EBV EBNA3A FLRGRAYGL effector memory T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-B*08:01 B2M MHCI -8491 chip0423_15422 -2.62 7.85 Chip2 healthy_3 healthy TGCAGCGTTGAGACAACTAGCGGGAGTGGCGAGCAGTACTTC CSVETTSGSGEQYF TRBV29-1*01 TRBJ2-7*01 217.0 14719.0 _CSVETTSGSGEQYF 1 5640 PGT-178 PGT 0.73 1480 PGT-178 139 5501 2 HomoSapiens PGT LLAGIGTVPI Naive T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*02:01 B2M MHCI -8492 chip0423_223755 15.79 10.7 Chip2 T1D_5 T1D TGTGCAGCGGCGGAAACCTCCTACGACAAGGTGATATTT CAAAETSYDKVIF TRAV13-1*01 TRAJ50*01 39.0 2413.0 TGTGCCAGCCAACTAGCGGGAGGCACCGGGGAGCTGTTTTTT CASQLAGGTGELFF TRBV24-1*01 TRBJ2-2*01 1.0 36.0 CAAAETSYDKVIF_CASQLAGGTGELFF 131 2793 BZLF1-190-197 EBV 0.6 2156 NEG 157 2636 12 EBV BZLF1 RAKFKQLL effector T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-B*08:01 B2M MHCI -8493 chip0423_65870 11.39 8.75 Chip2 healthy_4 healthy TGCATCCTTCCCCTAGCTGGTGGTACTAGCTATGGAAAGCTGACATTT CILPLAGGTSYGKLTF TRAV26-2*01 TRAJ52*01 1.0 71.0 CILPLAGGTSYGKLTF_ 55 3102 EBNA3A-193-201 EBV 0.83 1022 NEG 157 2945 10 EBV EBNA3A FLRGRAYGL effector memory T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-B*08:01 B2M MHCI -8494 chip0423_837428 10.86 8.8 Chip2 T1D_5 T1D TGTGCCAGCAGCTTCGTAGACAAGATAAATTCACCCCTCCACTTT CASSFVDKINSPLHF TRAV36/DV7*01 TRAJ11*01 3.0 7.0 TGTGCCAGCAGCTTCGTAGACAAGATAAATTCACCCCTCCACTTT CASSFVDKINSPLHF TRBV7-9*01 TRBJ1-6*01 71.0 2638.0 CASSFVDKINSPLHF_CASSFVDKINSPLHF 1 2962 BZLF1-190-197 EBV 0.88 2156 NEG 146 2816 10 EBV BZLF1 RAKFKQLL effector memory T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-B*08:01 B2M MHCI -8495 chip0423_651651 6.23 9.73 Chip2 healthy_4 healthy TGTGCTGCAGTGGGGCCCTGGGGCTGGGTGTTTCCGACTCACGTTC CAAVGPWgg??ctGCFRLTF TRAV8-3*01 TRAJ28*01 4.0 284.0 TGTGCCAGCAGCCAAGGCTGGTCTGGGACTTCAACCTACGAGCAGTACTTC CASSQGWSGTSTYEQYF TRBV3-1*01 TRBJ2-7*01 6.0 300.0 CAAVGPWgg??ctGCFRLTF_CASSQGWSGTSTYEQYF 1 8962 EBV-LMP2-FLY EBV 0.7 355 NEG 126 8836 6 EBV LMP2 FLYALALLL central memory T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*02:01 B2M MHCI -8496 chip0423_539676 -2.98 8.91 Chip2 T1D_5 T1D TGTGCCAGCACCCTAGACTGGACCACTGAAGCTTTCTTT CASTLDWTTEAFF TRBV11-1*01 TRBJ1-1*01 5.0 313.0 _CASTLDWTTEAFF 1 4427 G6PC2-LTS-10 IGRP 0.85 59 G6PC2-LTS-10 134 4293 2 HomoSapiens G6PC2 LTSLTILQLY Naive T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*01:01 B2M MHCI -8497 chip0423_633011 9.7 9.95 Chip2 healthy_3 healthy TGTGCCAGCAGCCAGATGTCAGATACGCAGTATTTT CASSQMSDTQYF TRBV6-2*01,TRBV6-3*01 TRBJ2-3*01 31.0 1349.0 _CASSQMSDTQYF 6 4865 EBV-BRLF1 EBV 0.83 1264 EBV-BRLF1 126 4739 9 EBV BRLF1 YVLDHLIVV effector memory T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*02:01 B2M MHCI -8498 chip0423_656592 -3.53 10.68 Chip2 T1D_4 T1D TGTGCAATGAGCGGATCTAACTTTGGAAATGAGAAATTAACCTTT CAMSGSNFGNEKLTF TRAV12-3*01 TRAJ48*01 56.0 1938.0 TGTGCCAGCAGCTCGAAGACTGCCGAAAAACTGTTTTTT CASSSKTAEKLFF TRBV13*01 TRBJ1-4*01 16.0 720.0 CAMSGSNFGNEKLTF_CASSSKTAEKLFF 1 4966 PGT-178 PGT 0.84 1480 PGT-178 141 4825 2 HomoSapiens PGT LLAGIGTVPI Naive T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*02:01 B2M MHCI -8499 chip0423_857338 12.12 13.36 Chip2 T1D_5 T1D TGCAGCGTTGGGGGGAACACTGAAGCTTTCTTT CSVGGNTEAFF TRBV29-1*01 TRBJ1-1*01 113.0 9598.0 _CSVGGNTEAFF 8 2035 BZLF1-190-197 EBV 0.91 2156 NEG 143 1892 11 EBV BZLF1 RAKFKQLL effector T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-B*08:01 B2M MHCI -8500 chip0423_692360 11.14 12.07 Chip2 T1D_5 T1D _ 6746 2668 BZLF1-190-197 EBV 0.63 2156 BZLF1-190-197 160 2508 9 EBV BZLF1 RAKFKQLL effector memory T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-B*08:01 B2M MHCI -8501 chip0423_592324 13.09 7.74 Chip2 T1D_5 T1D TGTGCAGCTCTCGAAACCTCCTACGACAAGGTGATATTT CAALETSYDKVIF TRAV13-1*01 TRAJ50*01 42.0 3086.0 TGTGCCAGCAGTCCCGACGGATCCACCGGGGAGCTGTTTTTT CASSPDGSTGELFF TRBV12-3*01,TRBV12-4*01 TRBJ2-2*01 40.0 1884.0 CAALETSYDKVIF_CASSPDGSTGELFF 14 2171 BZLF1-190-197 EBV 0.56 2156 NEG 163 2008 10 EBV BZLF1 RAKFKQLL effector memory T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-B*08:01 B2M MHCI -8502 chip0423_292644 -2.52 15.01 Chip2 T1D_6 T1D TGTGCAATGGGGCGATCTAACTTTGGAAATGAGAAATTAACCTTT CAMGRSNFGNEKLTF TRAV12-3*01 TRAJ48*01 43.0 1739.0 TGTGCCAGCGTTGGGGGGCAGGGCTACACCTTC CASVGGQGYTF TRBV12-3*01,TRBV12-4*01 TRBJ1-2*01 11.0 919.0 CAMGRSNFGNEKLTF_CASVGGQGYTF 1 2808 PGT-178 PGT 0.84 1480 PGT-178 165 2643 1 HomoSapiens PGT LLAGIGTVPI Naive T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*02:01 B2M MHCI -8503 chip0423_827944 -2.59 7.41 Chip2 T1D_4 T1D TGTGCTGGGCAGGCCTTCGCCGGTAACCAGTTCTATTTT CAGQAFAGNQFYF TRAV35*01 TRAJ49*01 4.0 301.0 TGTGCTACGGCCGCGGGTAACCCGTGGCTCTAGGTTGACCTCT CATAAGN??cRGSRLTS TRAV17*01 TRAJ53*01 8.0 229.0 0.4 CAGQAFAGNQFYF_ 1 7728 IGRP-265-273 IGRP 0.65 34 NEG 134 7594 2 HomoSapiens IGRP VLFGLGFAI Naive T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*02:01 B2M MHCI -8504 chip0423_708078 7.36 12.36 Chip2 T1D_6 T1D TGTGGCTCCCACGGGGGAAGCCAAGGAAATCTCATCTTT CGSHGGSQGNLIF TRAV20*01 TRAJ42*01 7.0 406.0 CGSHGGSQGNLIF_ 1 4506 ROTA-VP6 ROTA 0.47 47 ROTA-VP6 130 4376 7 RotavirusA VP6 TLLANVTAV transitional T cells between effector and memory populations PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*02:01 B2M MHCI -8505 chip0423_135356 -3.06 13.99 Chip2 T1D_6 T1D TGTGCAGCAAGCGAAGCATATGGAAACAAACTGGTCTTT CAASEAYGNKLVF TRAV29/DV5*01 TRAJ47*01 18.0 613.0 TGTGCCAGCAGTTTGGGCAGTGGCTCCTATAATTCACCCCTCCACTTT CASSLGSGSYNSPLHF TRBV12-3*01,TRBV12-4*01 TRBJ1-6*01 34.0 1049.0 CAASEAYGNKLVF_CASSLGSGSYNSPLHF 1 3496 EBNA3A-158-166 EBV 0.65 444 NEG 122 3374 1 EBV EBNA3A QAKWRLQTL Naive T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-B*08:01 B2M MHCI -8506 chip0423_63534 12.88 6.26 Chip2 T1D_4 T1D TGCGCCAGCAGCCAAGAAGTCACAGATACGCAGTATTTT CASSQEVTDTQYF TRBV4-3*01 TRBJ2-3*01 10.0 326.0 _CASSQEVTDTQYF 5 4699 EBV-LMP1-1 EBV 0.67 237 NEG 152 4547 10 EBV LMP1 YLLEMLWRL effector memory T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*02:01 B2M MHCI -8507 chip0423_444138 10.87 7.27 Chip2 T1D_5 T1D TGTGCAGCGGCGGAAACCTCCTACGACAAGGTGATATTT CAAAETSYDKVIF TRAV13-1*01 TRAJ50*01 27.0 2025.0 TGTGCCAGCCAACTAGCGGGAGGCACCGGGGAGCTGTTTTTT CASQLAGGTGELFF TRBV24-1*01 TRBJ2-2*01 15.0 361.0 CAAAETSYDKVIF_CASQLAGGTGELFF 131 3838 BZLF1-190-197 EBV 0.6 2156 NEG 172 3666 10 EBV BZLF1 RAKFKQLL effector memory T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-B*08:01 B2M MHCI -8508 chip0423_142434 -0.35 8.67 Chip2 T1D_4 T1D TGTGCTGTGAGAGACTAACATGCTCCCCTTT CAVRD??tNMLPF TRAV3*01 TRAJ39*01 18.0 1875.0 TGTGCCAGCAGCCCATCTGGACAGGGGTCCTACGAGCAGTACTTC CASSPSGQGSYEQYF TRBV6-1*01 TRBJ2-7*01 42.0 1615.0 CAVRD??tNMLPF_CASSPSGQGSYEQYF 1 7327 PGT-178 PGT 0.93 1480 NEG 148 7179 4 HomoSapiens PGT LLAGIGTVPI Naive T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*02:01 B2M MHCI -8509 chip0423_872165 11.67 7.39 Chip2 T1D_6 T1D TGCATCCTCCCACTTGCTGGTGGTACTAGCTATGGAAAGCTGACAGTT CILPLAGGTSYGKLTV TRAV26-2*01 TRAJ52*01 34.0 1753.0 CILPLAGGTSYGKLTV_ 1 5188 EBNA3A-193-201 EBV 0.71 1022 NEG 187 5001 10 EBV EBNA3A FLRGRAYGL effector memory T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-B*08:01 B2M MHCI -8510 chip0423_425498 -3.42 8.19 Chip2 T1D_6 T1D TGTGCCAGCAGTTGGGGCTACGAGCAGTACTTC CASSWGYEQYF TRBV12-3*01,TRBV12-4*01 TRBJ2-7*01 1.0 147.0 _CASSWGYEQYF 1 6916 PGT-178 PGT 0.45 1480 PGT-178 161 6755 2 HomoSapiens PGT LLAGIGTVPI Naive T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*02:01 B2M MHCI -8511 chip0423_332359 6.46 10.04 Chip2 T1D_5 T1D TGTGCCAGCAGCTCCTTAAGCGGGGGGGCAGGAAATGAGCAGTTCTTC CASSSLSGGAGNEQFF TRBV7-9*01 TRBJ2-1*01 17.0 672.0 _CASSSLSGGAGNEQFF 33 5998 BZLF1-190-197 EBV 0.75 2156 BZLF1-190-197 175 5823 6 EBV BZLF1 RAKFKQLL central memory T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-B*08:01 B2M MHCI -8512 chip0423_131089 15.02 11.34 Chip2 T1D_5 T1D TGTGCAGCGGCGGAAACCTCCTACGACAAGGTGATATTT CAAAETSYDKVIF TRAV13-1*01 TRAJ50*01 14.0 2005.0 TGTGCCAGCCAACTAGCGGGAGGCACCGGAGAGCTGTTTTTT CASQLAGGTGELFF TRBV24-1*01 TRBJ2-2*01 8.0 418.0 CAAAETSYDKVIF_CASQLAGGTGELFF 131 2616 BZLF1-190-197 EBV 0.78 2156 NEG 139 2477 12 EBV BZLF1 RAKFKQLL effector T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-B*08:01 B2M MHCI -8513 chip0423_27359 5.67 10.98 Chip2 T1D_5 T1D TGTGCCAGCAGCCTAGTCGTCTACAATGAGCAGTTCTTC CASSLVVYNEQFF TRBV6-1*01 TRBJ2-1*01 15.0 1052.0 _CASSLVVYNEQFF 1 7621 ZNT8-YAY-8 ZNT8 0.72 54 NEG 154 7467 6 HomoSapiens ZNT8 YAYAKWKL central memory T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-B*08:01 B2M MHCI -8514 chip0423_3188 -2.35 10.0 Chip2 T1D_6 T1D TGTGTGGTGATAGCAGGCGACTACAAGCTCAGCTTT CVVIAGDYKLSF TRAV12-1*01 TRAJ20*01 5.0 453.0 TGCAGTGCTAGGTATAGACTAGCGGGGCCCTACGAGCAGTACTTC CSARYRLAGPYEQYF TRBV20-1*01 TRBJ2-7*01 46.0 1970.0 CVVIAGDYKLSF_CSARYRLAGPYEQYF 1 5308 EBNA3A-158-166 EBV 0.58 444 NEG 142 5166 3 EBV EBNA3A QAKWRLQTL Naive T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-B*08:01 B2M MHCI -8515 chip0423_861220 8.82 10.51 Chip2 T1D_4 T1D TGTGCCTATGGTCAGAATTTTGTCTTT CAYGQNFVF TRAV8-3*01 TRAJ26*01 16.0 2074.0 TGTGCCAGCAGCGCAGACAGCGATTATGGCTACACCTTC CASSADSDYGYTF TRBV9*01 TRBJ1-2*01 17.0 1001.0 CAYGQNFVF_CASSADSDYGYTF 8 6195 EBV-LMP1-1 EBV 0.7 237 NEG 143 6052 8 EBV LMP1 YLLEMLWRL effector memory T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*02:01 B2M MHCI -8516 chip0423_629350 11.96 10.51 Chip2 T1D_5 T1D TGTGCAGCAATAGAAACCTCCTACGACAAGGTGATATTT CAAIETSYDKVIF TRAV13-1*01 TRAJ50*01 37.0 666.0 TGCAGCGTTGCCGGTAACACTGAAGCTTTCTTT CSVAGNTEAFF TRBV29-1*01 TRBJ1-1*01 94.0 7196.0 CAAIETSYDKVIF_CSVAGNTEAFF 1 3737 BZLF1-190-197 EBV 1.0 2156 NEG 151 3586 9 EBV BZLF1 RAKFKQLL effector memory T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-B*08:01 B2M MHCI -8517 chip0423_314606 10.95 6.31 Chip2 T1D_4 T1D TGTGCTGTCCCAGGAGGAAGCCAAGGAAATCTCATCTTT CAVPGGSQGNLIF TRAV8-3*01 TRAJ42*01 54.0 2987.0 TGTGCCAGCAGTTACTCAAGTACAGGGGAGTACTTC CASSYSSTGEYF TRBV6-2*01,TRBV6-3*01 TRBJ2-7*01 11.0 510.0 CAVPGGSQGNLIF_CASSYSSTGEYF 20 13869 EBV-LMP1-1 EBV 0.5 237 NEG 164 13705 10 EBV LMP1 YLLEMLWRL effector memory T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*02:01 B2M MHCI -8518 chip0423_833771 12.64 13.79 Chip2 T1D_5 T1D TGTGCACCTAGCGAAACCTCCTACGACAAGGTGATATTT CAPSETSYDKVIF TRAV13-1*01 TRAJ50*01 29.0 1702.0 CAPSETSYDKVIF_ 1 1902 BZLF1-190-197 EBV 0.88 2156 NEG 126 1776 11 EBV BZLF1 RAKFKQLL effector T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-B*08:01 B2M MHCI -8519 chip0423_820827 8.86 7.78 Chip2 T1D_5 T1D TGTGCCGTGACCTTTAGTTCTACCTCAGGAACCTACAAATACATCTTT CAVTFSSTSGTYKYIF TRAV8-1*01 TRAJ40*01 31.0 1088.0 CAVTFSSTSGTYKYIF_ 1 7188 BZLF1-190-197 EBV 0.67 2156 NEG 172 7016 8 EBV BZLF1 RAKFKQLL effector memory T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-B*08:01 B2M MHCI -8520 chip0423_429825 -3.07 9.27 Chip2 T1D_6 T1D TGTGCCAGCAGGGGCAGGGAGTATACAGATACGCAGTATTTT CASRGREYTDTQYF TRBV6-1*01 TRBJ2-3*01 67.0 2149.0 _CASRGREYTDTQYF 1 6308 POL-132-140 HIV 0.44 37 NEG 138 6170 2 HIV-1 POL LVGPTPVNI Naive T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*02:01 B2M MHCI -8521 chip0423_257123 10.87 11.88 Chip2 healthy_3 healthy TGTGCCGTGAAGGACACCGACAAGCTCATCTTT CAVKDTDKLIF TRAV8-1*01 TRAJ34*01 18.0 1295.0 CAVKDTDKLIF_ 56 2850 EBV-BRLF1 EBV 0.74 1264 NEG 127 2723 9 EBV BRLF1 YVLDHLIVV effector memory T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*02:01 B2M MHCI -8522 chip0423_180436 -4.03 12.88 Chip2 T1D_4 T1D TGTGCCAGCAGCTCTGGACAGCCTCTTCAGTTCTTC CASSSGQPLQFF TRBV4-2*01 TRBJ2-1*01 34.0 3429.0 _CASSSGQPLQFF 1 4216 PGT-178 PGT 0.52 1480 NEG 127 4089 1 HomoSapiens PGT LLAGIGTVPI Naive T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*02:01 B2M MHCI -8523 chip0423_59126 15.82 11.9 Chip2 T1D_6 T1D TGCATCCTCCCACTCGCTGGTGGTACTAGCTATGGAAAGCTGACATTT CILPLAGGTSYGKLTF TRAV26-2*01 TRAJ52*01 63.0 3777.0 TGTGCCAGCAACTTGGGACAAGCCTACGAGCAGTACTTC CASNLGQAYEQYF TRBV7-8*01 TRBJ2-7*01 12.0 865.0 CILPLAGGTSYGKLTF_CASNLGQAYEQYF 1 2245 EBNA3A-193-201 EBV 0.89 1022 NEG 143 2102 12 EBV EBNA3A FLRGRAYGL effector T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-B*08:01 B2M MHCI -8524 chip0423_850409 7.47 12.21 Chip2 healthy_3 healthy TGTGCAGCAAGCTCCCACACCGACAAGCTCATCTTT CAASSHTDKLIF TRAV29/DV5*01 TRAJ34*01 16.0 1688.0 CAASSHTDKLIF_ 1 5345 INS-GSH-9 INS 0.59 19 NEG 149 5196 7 HomoSapiens INS GSHLVEALY transitional T cells between effector and memory populations PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*01:01 B2M MHCI -8525 chip0423_635263 12.07 6.93 Chip2 T1D_5 T1D TGTGCTAGTGGTCCGGACATATCCTACTCCTACGAGCAGTACTTC CASGPDISYSYEQYF TRBV12-5*01 TRBJ2-7*01 4.0 277.0 _CASGPDISYSYEQYF 10 4081 BZLF1-190-197 EBV 0.86 2156 NEG 141 3940 10 EBV BZLF1 RAKFKQLL effector memory T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-B*08:01 B2M MHCI -8526 chip0423_362381 12.72 7.22 Chip2 healthy_4 healthy TGTGCCAGCAGCTTAGATAGTCCTTCCTACTACGAGCAGTACTTC CASSLDSPSYYEQYF TRBV11-2*01 TRBJ2-7*01 16.0 918.0 _CASSLDSPSYYEQYF 2 2476 ZNT8-273-282 ZNT8 1.0 8 NEG 167 2309 10 HomoSapiens ZNT8 LLMEGVPKSL effector memory T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*02:01 B2M MHCI -8527 chip0423_359380 -0.78 9.87 Chip2 healthy_3 healthy TGTGCTCTGAGTGATCAGGTCAGGCAGGAACTGCTCTGATCTTT CALSDQVa?gAGTALIF TRAV9-2*01 TRAJ15*01 47.0 2032.0 TGTGCCACGACTGGAGAATCCTACAATGAGCAGTTCTTC CATTGESYNEQFF TRBV10-3*01 TRBJ2-1*01 42.0 2300.0 CALSDQVa?gAGTALIF_CATTGESYNEQFF 1 8189 NP140-148 FLU 0.98 102 NP140-148 123 8066 3 InfluenzaA NP HSNLNDATY Naive T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*01:01 B2M MHCI -8528 chip0423_346962 9.1 11.34 Chip2 healthy_3 healthy TGTTCTCTAGCCGGTTTCGGAATTCAGGAGGCACACCTCCGGTCTGT CSLAGFGat?SGGTPPVC TRAV6*01 TRAJ29*01 7.0 78.0 TGCAGTGTAGGAGACAGGGCATCCTATGGCTACACCTTC CSVGDRASYGYTF TRBV20-1*01 TRBJ1-2*01 29.0 1917.0 CSLAGFGat?SGGTPPVC_CSVGDRASYGYTF 1 5677 NP44-52 FLU 1.0 474 NEG 137 5540 9 InfluenzaA NP CTELKLSDY effector memory T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*01:01 B2M MHCI -8529 chip0423_166434 13.06 9.25 Chip2 healthy_4 healthy TGTGCCTGCGGCTTTATCTCTTTCGGGACAGACTTAATCTGGGGCCAACGTACTGCCTTTC CACGFISFGT??gT*SGANVLPF TRBV7-3*01 TRBJ2-6*01 3.0 29.0 _CACGFISFGT??gT*SGANVLPF 1 4492 BZLF1-190-197 EBV 0.8 2156 NEG 153 4339 10 EBV BZLF1 RAKFKQLL effector memory T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-B*08:01 B2M MHCI -8530 chip0423_778256 -1.87 7.17 Chip2 healthy_3 healthy TGTGCTGTCCCAGGAGGAAGCCAAGGAAATCTCATCTTT CAVPGGSQGNLIF TRAV8-3*01 TRAJ42*01 20.0 2001.0 CAVPGGSQGNLIF_ 1 7470 INS-2-11 INS 0.53 5 NEG 129 7341 3 HomoSapiens INS ALWMRLLPLL Naive T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*02:01 B2M MHCI -8531 chip0423_6456 -4.01 9.29 Chip2 healthy_3 healthy TGTGCGGATAACTATGGTCAGAATTTTGTCTTT CADNYGQNFVF TRAV17*01 TRAJ26*01 2.0 206.0 TGTGCCATCGCCTCCCCCCAGCGGGAGGGGACAGATACGCAGTATTTT CAIASPQREGTDTQYF TRBV28*01 TRBJ2-3*01 15.0 632.0 CADNYGQNFVF_CAIASPQREGTDTQYF 1 6302 PGT-178 PGT 0.8 1480 PGT-178 142 6160 2 HomoSapiens PGT LLAGIGTVPI Naive T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*02:01 B2M MHCI -8532 chip0423_412849 -0.21 6.83 Chip2 T1D_6 T1D TGTGCTTCGAGGAATTCAGGAAACACACCTCTTGTCTCT CASRNSGNTPLVS TRAV21*01 TRAJ29*01 4.0 199.0 TGTGCCAGCAGTTACGCCATCGCAGAGCAGTACTTC CASSYAIAEQYF TRBV6-5*01 TRBJ2-7*01 31.0 1329.0 CASRNSGNTPLVS_CASSYAIAEQYF 1 10060 PGT-178 PGT 0.42 1480 PGT-178 167 9893 3 HomoSapiens PGT LLAGIGTVPI Naive T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*02:01 B2M MHCI -8533 chip0423_173669 -0.63 10.28 Chip2 T1D_5 T1D TGTGCTGCTCTAATTCTGGGGGTTACGCGACAGTGTCGATT CAALILgg?GYATVSI TRAV24*01,TRAV12-3*01 TRAJ13*01 2.0 65.0 TGTGCCAGCAGTCCCCACGGTGACGCTTATGGCTACACCTTC CASSPHGDAYGYTF TRBV12-3*01,TRBV12-4*01 TRBJ1-2*01 8.0 546.0 CAALILgg?GYATVSI_CASSPHGDAYGYTF 1 6304 GAD2-QQD-10 GAD65 0.67 7 NEG 130 6174 3 HomoSapiens GAD2 QQDKHYDLSY Naive T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*01:01 B2M MHCI -8534 chip0423_500376 11.61 8.35 Chip2 healthy_4 healthy TGTGCTGTGGAGGATCAAGGGAGATCTTATAACACCGACAAGCTCATCTTT CAVEDQGRSYNTDKLIF TRAV2*01 TRAJ34*01 69.0 1432.0 TGTGCTGTGGAGAAGAAGAACACCGACAAGCTCATCTTT CAVEKKNTDKLIF TRAV21*01 TRAJ34*01 37.0 1824.0 0.26 CAVEDQGRSYNTDKLIF_ 15 4179 BZLF1-190-197 EBV 0.93 2156 NEG 163 4016 10 EBV BZLF1 RAKFKQLL effector memory T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-B*08:01 B2M MHCI -8535 chip0423_403901 8.16 13.7 Chip2 healthy_4 healthy _ 6746 2492 ROTA-VP6 ROTA 1.0 47 NEG 119 2373 7 RotavirusA VP6 TLLANVTAV transitional T cells between effector and memory populations PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*02:01 B2M MHCI -8536 chip0423_249848 -3.32 8.81 Chip2 T1D_4 T1D TGTGCCATGGGCGTATCTAACTTTGAAAGTGAGAAATTAACCTTT CAMGVSNFESEKLTF TRAV12-3*01 TRAJ48*01 62.0 1859.0 TGTGCCAGCAGCCGAGTCCAGGTGGCAGGGGAAGAGACCCAGTACTTC CASSRVQVAGEETQYF TRBV5-6*01 TRBJ2-5*01 17.0 409.0 CAMGVSNFESEKLTF_CASSRVQVAGEETQYF 1 7101 PGT-178 PGT 0.48 1480 PGT-178 139 6962 2 HomoSapiens PGT LLAGIGTVPI Naive T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*02:01 B2M MHCI -8537 chip0423_69534 6.79 13.37 Chip2 T1D_5 T1D TGTGCAGAGGCAGGAACTGCTCTGCTCTTT CAEAGTALLF TRAV13-2*01 TRAJ15*01 3.0 561.0 TGCGCCAGCAGCCAAGACGGCACAGGGATTAACACTGAAGCTTTCTTT CASSQDGTGINTEAFF TRBV4-1*01 TRBJ1-1*01 14.0 338.0 CAEAGTALLF_CASSQDGTGINTEAFF 1 3352 NP44-52 FLU 0.85 474 NP44-52 136 3216 7 InfluenzaA NP CTELKLSDY transitional T cells between effector and memory populations PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*01:01 B2M MHCI -8538 chip0423_62265 10.42 10.49 Chip2 healthy_4 healthy TGTGCCAGCAGCACGACCCGCGCAGGGACTTGGCCCCTCCACTTT CASSTTRAGTWPLHF TRAV36/DV7*01 TRAJ11*01 2.0 8.0 TGTGCCAGCAGCACGACCCGCGCAGGGACTTGGCCCCTCCACTTT CASSTTRAGTWPLHF TRBV7-9*01 TRBJ1-6*01 30.0 1706.0 CASSTTRAGTWPLHF_CASSTTRAGTWPLHF 1 4661 BZLF1-190-197 EBV 1.0 2156 NEG 128 4533 9 EBV BZLF1 RAKFKQLL effector memory T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-B*08:01 B2M MHCI -8539 chip0423_456567 5.09 9.69 Chip2 T1D_4 T1D TGTGCCAGCACCCCTTTGTTGGGGGGCGCATCTACGCAGTATTTT CASTPLLGGASTQYF TRBV6-1*01 TRBJ2-3*01 39.0 1182.0 _CASTPLLGGASTQYF 1 5492 EBV-BRLF1 EBV 0.59 1264 EBV-BRLF1 162 5330 6 EBV BRLF1 YVLDHLIVV central memory T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*02:01 B2M MHCI -8540 chip0423_391713 7.05 10.31 Chip2 T1D_6 T1D TGTGCCAGTAGTATATATAGCATCAATGAGCAGTTCTTC CASSIYSINEQFF TRBV19*01 TRBJ2-1*01 67.0 3845.0 _CASSIYSINEQFF 2 7873 M1 FLU 0.5 1250 NEG 157 7716 7 InfluenzaA M1 GILGFVFTL transitional T cells between effector and memory populations PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*02:01 B2M MHCI -8541 chip0423_520538 6.5 12.8 Chip2 T1D_4 T1D _ 6746 3898 EBNA3A-193-201 EBV 0.69 1022 EBNA3A-193-201 167 3731 7 EBV EBNA3A FLRGRAYGL transitional T cells between effector and memory populations PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-B*08:01 B2M MHCI -8542 chip0423_295267 14.77 11.21 Chip2 T1D_6 T1D TGCAGCGCCGGCAGGGACGGGACTAATGAAAAACTGTTTTTT CSAGRDGTNEKLFF TRBV29-1*01 TRBJ1-4*01 167.0 6696.0 _CSAGRDGTNEKLFF 159 3396 EBV-BLMF1 EBV 0.44 2531 NEG 153 3243 12 EBV BLMF1 GLCTLVAML effector T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*02:01 B2M MHCI -8543 chip0423_35612 8.9 7.99 Chip2 T1D_5 T1D TGTGCAGAGAACCAAAACCTCCTACGACAAGGTGATATTT CAENQNct??ccYDKVIF TRAV13-2*01 TRAJ50*01 1.0 75.0 TGTGCCAGCAGCGTCCCGGCCACAGGGGGGACCGGGGAGCTGTTTTTT CASSVPATGGTGELFF TRBV9*01 TRBJ2-2*01 52.0 2251.0 CAENQNct??ccYDKVIF_CASSVPATGGTGELFF 1 7721 BZLF1-190-197 EBV 0.57 2156 NEG 154 7567 8 EBV BZLF1 RAKFKQLL effector memory T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-B*08:01 B2M MHCI -8544 chip0423_745438 -2.41 10.12 Chip2 T1D_4 T1D TGTGCCAGCAGCCAAGAGTGGAGCTCCACAGATACGCAGTATTTT CASSQEWSSTDTQYF TRBV4-2*01 TRBJ2-3*01 17.0 408.0 _CASSQEWSSTDTQYF 1 5819 PB1-590-599 FLU 0.63 37 PB1-590-599 135 5684 3 InfluenzaA PB1 LVSDGGPNLY Naive T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*01:01 B2M MHCI -8545 chip0423_664898 5.3 11.33 Chip2 T1D_5 T1D _ 6746 8780 ZNT8-VTD-9 ZNT8 0.71 65 ZNT8-VTD-9 151 8629 6 HomoSapiens ZNT8 VTDAAHLLI central memory T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*01:01 B2M MHCI -8546 chip0423_259603 -4.06 9.7 Chip2 healthy_3 healthy TGTGCCCTGCCCTCAGGAAACACGCCTCTTGTCTTT CALPSGNTPLVF TRAV12-2*01 TRAJ29*01 7.0 647.0 TGTGCCAGTAGTATTTTGGGCCTGAACACCGGGGAGCTGTTTTTT CASSILGLNTGELFF TRBV19*01 TRBJ2-2*01 30.0 818.0 CALPSGNTPLVF_CASSILGLNTGELFF 1 4951 PGT-178 PGT 0.42 1480 PGT-178 137 4814 2 HomoSapiens PGT LLAGIGTVPI Naive T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*02:01 B2M MHCI -8547 chip0423_210809 10.74 11.54 Chip2 healthy_4 healthy TGTGCCAGCAGGGTAGGCCGAGAACCCACCGGGGAGCTGTTTTTT CASRVGREPTGELFF TRBV3-1*01 TRBJ2-2*01 66.0 3182.0 _CASRVGREPTGELFF 13 3492 BZLF1-190-197 EBV 0.73 2156 NEG 146 3346 9 EBV BZLF1 RAKFKQLL effector memory T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-B*08:01 B2M MHCI -8548 chip0423_204940 -3.47 8.77 Chip2 T1D_6 T1D TGTGCTACGGACGCGAACACCGGTAACCAGTTCTATTTT CATDANTGNQFYF TRAV17*01 TRAJ49*01 108.0 6157.0 CATDANTGNQFYF_ 1 7450 ZNT8-186-194 ZNT8 0.63 22 ZNT8-186-194 145 7305 2 HomoSapiens ZNT8 VAANIVLTV Naive T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*02:01 B2M MHCI -8549 chip0423_814321 13.72 12.98 Chip2 T1D_6 T1D TGTGCAGCAAGCAAGATAGAGGAGGAGGTGCTGCCGGACTCACCTTT CAASKIEga?GGAAGLTF TRAV23/DV6*01 TRAJ45*01 43.0 2064.0 TGTGCCAGCAGCTTGGGACAGGCCTACGAGCAGTACTTC CASSLGQAYEQYF TRBV7-8*01 TRBJ2-7*01 26.0 1553.0 CAASKIEga?GGAAGLTF_CASSLGQAYEQYF 2 2530 EBNA3A-193-201 EBV 0.83 1022 NEG 172 2358 12 EBV EBNA3A FLRGRAYGL effector T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-B*08:01 B2M MHCI -8550 chip0423_698659 7.02 12.52 Chip2 T1D_4 T1D TGTGCTGTGGGTGACCCCTAATTCAGGAAACACACCTCTTGTCTTT CAVGDP*tt??caGNTPLVF TRAV8-3*01 TRAJ29*01 34.0 2051.0 TGTGCCAGTAGTCCGGGCGTAATCTACGAGCAGTACTTC CASSPGVIYEQYF TRBV19*01 TRBJ2-7*01 70.0 3521.0 CAVGDP*tt??caGNTPLVF_CASSPGVIYEQYF 1 4621 MART1-A28L MART1 0.54 84 MART1-A28L 125 4496 7 HomoSapiens MART1 ALGIGILTV transitional T cells between effector and memory populations PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*02:01 B2M MHCI -8551 chip0423_821651 6.71 12.08 Chip2 healthy_3 healthy TGTGCCAGTAGTACTCCGCGAGCGATTAGCTCCTACAATGAGCAGTTCTTC CASSTPRAISSYNEQFF TRBV19*01 TRBJ2-1*01 6.0 292.0 _CASSTPRAISSYNEQFF 1 6104 NP44-52 FLU 0.8 474 NP44-52 141 5963 7 InfluenzaA NP CTELKLSDY transitional T cells between effector and memory populations PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*01:01 B2M MHCI -8552 chip0423_107699 -4.6 9.1 Chip2 healthy_3 healthy TGTGCCGTGACGGGCGACTACAAGCTCAGCTTT CAVTGDYKLSF TRAV12-2*01 TRAJ20*01 9.0 620.0 TGTGCCAGCAATTCCCAGGGGTTGGAGACTGAAGCTTTCTTT CASNSQGLETEAFF TRBV7-9*01 TRBJ1-1*01 41.0 1292.0 CAVTGDYKLSF_CASNSQGLETEAFF 1 5840 PGT-178 PGT 0.57 1480 NEG 121 5719 2 HomoSapiens PGT LLAGIGTVPI Naive T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*02:01 B2M MHCI -8553 chip0423_349485 -3.79 9.35 Chip2 T1D_6 T1D _ 6746 6781 ZNT8-145-153 ZNT8 0.5 14 NEG 149 6632 2 HomoSapiens ZNT8 LLSILCIWV Naive T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*02:01 B2M MHCI -8554 chip0423_853396 11.18 8.64 Chip2 T1D_5 T1D TGTGCCAGCAGTCCCCCGGGGAGAAATGAAAAACTGTTTTTT CASSPPGRNEKLFF TRBV12-3*01,TRBV12-4*01 TRBJ1-4*01 84.0 3417.0 _CASSPPGRNEKLFF 11 5629 BZLF1-190-197 EBV 0.79 2156 BZLF1-190-197 156 5473 10 EBV BZLF1 RAKFKQLL effector memory T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-B*08:01 B2M MHCI -8555 chip0423_235112 8.86 9.1 Chip2 healthy_4 healthy _ 6746 6444 BZLF1-190-197 EBV 1.0 2156 NEG 135 6309 8 EBV BZLF1 RAKFKQLL effector memory T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-B*08:01 B2M MHCI -8556 chip0423_21942 11.99 6.57 Chip2 T1D_5 T1D TGTGCAGAGGAGGAAACCTCCTACGACAAGGTGATATTT CAEEETSYDKVIF TRAV13-2*01 TRAJ50*01 9.0 611.0 TGTGCCAGCAGCTTACTCGACGGCGAGGACACTGAAGCTTTCTTT CASSLLDGEDTEAFF TRBV7-9*01 TRBJ1-1*01 29.0 1317.0 CAEEETSYDKVIF_CASSLLDGEDTEAFF 1 5649 BZLF1-190-197 EBV 0.88 2156 BZLF1-190-197 161 5488 10 EBV BZLF1 RAKFKQLL effector memory T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-B*08:01 B2M MHCI -8557 chip0423_520595 -3.54 10.29 Chip2 T1D_5 T1D TGTGCCGATACTAACACCGACAAGCTCATCTTT CADTNTDKLIF TRAV27*01 TRAJ34*01 5.0 402.0 TGAGCAGGGACTGCGCTAGGCAGGAGAGCACTTACCTTT *AGTALGRRALTF TRAV13-2*01 TRAJ5*01 2.0 249.0 0.2 TGTGCCAGCAGACGTAGGGGTGGCCCTCCTTACGAGCAGTACTT CASRRRGg?gPSLRAVL TRBV7-6*01 TRBJ2-7*01 16.0 1374.0 CADTNTDKLIF_CASRRRGg?gPSLRAVL 1 5371 gp160-586-593 HIV 0.48 30 NEG 126 5245 2 HIV-1 gp160 YLKDQQLL Naive T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-B*08:01 B2M MHCI -8558 chip0423_398718 13.0 8.34 Chip2 T1D_4 T1D TGTGCTGTGAGTGATGGAGAAGGAGCCCAGAAGCTGGTATTT CAVSDGEGAQKLVF TRAV8-6*01 TRAJ54*01 31.0 1558.0 TGTGCCAGCAGCTTAACGATTCTGGCAGGTCCAAACACTGAAGCTTTCTTT CASSLTILAGPNTEAFF TRBV7-3*01 TRBJ1-1*01 33.0 1074.0 CAVSDGEGAQKLVF_CASSLTILAGPNTEAFF 1 3268 BZLF1-190-197 EBV 0.64 2156 NEG 156 3112 10 EBV BZLF1 RAKFKQLL effector memory T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-B*08:01 B2M MHCI -8559 chip0423_712876 -3.4 10.89 Chip2 T1D_6 T1D TGCGCCAGCAGCCAGGGACAGGGGCTCTATGGCTACACCTTC CASSQGQGLYGYTF TRBV4-1*01 TRBJ1-2*01 14.0 357.0 _CASSQGQGLYGYTF 1 5315 gp160-586-593 HIV 0.55 30 NEG 124 5191 2 HIV-1 gp160 YLKDQQLL Naive T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-B*08:01 B2M MHCI -8560 chip0423_240100 9.34 9.76 Chip2 T1D_4 T1D TGTGCTGTGAGTGATGGAGAAGGAGCCCAGAAGCTGGTATTT CAVSDGEGAQKLVF TRAV8-6*01 TRAJ54*01 1.0 120.0 CAVSDGEGAQKLVF_ 12 5785 BZLF1-190-197 EBV 0.85 2156 BZLF1-190-197 149 5636 8 EBV BZLF1 RAKFKQLL effector memory T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-B*08:01 B2M MHCI -8561 chip0423_612356 -3.63 10.25 Chip2 T1D_6 T1D TGTGCAATGACCCTATCTAACTTTGGAAATGAGAAATTAACCTTT CAMTLSNFGNEKLTF TRAV12-3*01 TRAJ48*01 49.0 1822.0 TGTGCCAGCAGCATTGGAGGCTACAGGTACCTCCAAGAGACCCAGTACTTC CASSIGGYRYLQETQYF TRBV11-2*01 TRBJ2-5*01 13.0 692.0 CAMTLSNFGNEKLTF_CASSIGGYRYLQETQYF 1 6483 PGT-178 PGT 0.7 1480 PGT-178 136 6347 2 HomoSapiens PGT LLAGIGTVPI Naive T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*02:01 B2M MHCI -8562 chip0423_81458 11.15 7.47 Chip2 T1D_5 T1D TGTGCAGCACTGGAAACCTCCTACGACAAGGTGATATTT CAALETSYDKVIF TRAV13-1*01 TRAJ50*01 27.0 2002.0 TGTGCCAGCACAGGGGGGAACACTGAAGCTTTCTTT CASTGGNTEAFF TRBV2*01 TRBJ1-1*01 52.0 2676.0 CAALETSYDKVIF_CASTGGNTEAFF 1 4739 BZLF1-190-197 EBV 0.42 2156 NEG 146 4593 10 EBV BZLF1 RAKFKQLL effector memory T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-B*08:01 B2M MHCI -8563 chip0423_858732 7.11 13.43 Chip2 T1D_6 T1D TGTGCTGTGAGAGAATATGGAAACAAACTGGTCTTT CAVREYGNKLVF TRAV1-2*01 TRAJ47*01 1.0 14.0 TGTGCCAGCAGCTTAGCGGGTCGTGAGGGTACGCAGTATTTT CASSLAGREGTQYF TRBV11-3*01 TRBJ2-3*01 1.0 46.0 CAVREYGNKLVF_CASSLAGREGTQYF 7 4600 NP380-388 FLU 0.7 60 NEG 158 4442 7 InfluenzaA NP ELRSRYWAI transitional T cells between effector and memory populations PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-B*08:01 B2M MHCI -8564 chip0423_76355 10.74 9.37 Chip2 T1D_4 T1D TGTGCCGCCTCTGAAACCTCCTACGACAAGGTGATATTT CAASETSYDKVIF TRAV13-1*01 TRAJ50*01 48.0 3452.0 TGTGCCAGCAGCTCGACAGGGGGCGGGGATCAGCCCCAGCATTTT CASSSTGGGDQPQHF TRBV7-9*01 TRBJ1-5*01 38.0 1537.0 CAASETSYDKVIF_CASSSTGGGDQPQHF 9 4909 BZLF1-190-197 EBV 0.86 2156 NEG 166 4743 9 EBV BZLF1 RAKFKQLL effector memory T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-B*08:01 B2M MHCI -8565 chip0423_68122 -0.83 10.17 Chip2 healthy_3 healthy TGTGCAGAGATTCCCAGGAACACAGGCAAACTAATCTTT CAEIPRNTGKLIF TRAV5*01 TRAJ37*01 28.0 1663.0 TGTGCCTGGACTGGGGCTAGCGGGGGGGCGGAGCAGTTCTTC CAWTGASGGAEQFF TRBV30*01 TRBJ2-1*01 1.0 33.0 CAEIPRNTGKLIF_CAWTGASGGAEQFF 1 6729 CVB3-P3A CVB 0.46 77 NEG 150 6579 3 CoxsackievirusB P3A GIIYIIYKL Naive T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*02:01 B2M MHCI -8566 chip0423_302372 -3.16 13.68 Chip2 T1D_6 T1D TGCATCGTCAGATCCAACGGCGGGGGTGCCAAGGTCGTCTCCTCTTT CIVRSNGgg?GCQGRLLF TRAV26-1*01 TRAJ42*01 6.0 233.0 TGTGCCAGCAGTGATTTTCAGGGGAGCACTGAAGCTTTCTTT CASSDFQGSTEAFF TRBV2*01 TRBJ1-1*01 14.0 913.0 CIVRSNGgg?GCQGRLLF_CASSDFQGSTEAFF 1 3797 PGT-178 PGT 0.58 1480 NEG 133 3664 1 HomoSapiens PGT LLAGIGTVPI Naive T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*02:01 B2M MHCI -8567 chip0423_212724 -0.94 8.74 Chip2 T1D_6 T1D TGTGTGGTGGGCCCGGGGAACAGAGATGACAAGATCATCTTT CVVGPGNRDDKIIF TRAV12-1*01 TRAJ30*01 24.0 895.0 TGTGCCGTGCTCTCTAGCAACACAGGCAAACTAATCTTT CAVLSSNTGKLIF TRAV12-2*01 TRAJ37*01 20.0 837.0 0.35 TGCAGTGCCATGACAGGGGTCGGTCAGCCCCAGCATTTT CSAMTGVGQPQHF TRBV20-1*01 TRBJ1-5*01 1.0 22.0 CVVGPGNRDDKIIF_CSAMTGVGQPQHF 1 8232 PGT-178 PGT 0.78 1480 PGT-178 157 8075 3 HomoSapiens PGT LLAGIGTVPI Naive T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*02:01 B2M MHCI -8568 chip0423_69910 9.33 7.84 Chip2 T1D_6 T1D _ 6746 6092 EBNA3A-193-201 EBV 0.88 1022 EBNA3A-193-201 147 5945 8 EBV EBNA3A FLRGRAYGL effector memory T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-B*08:01 B2M MHCI -8569 chip0423_377185 13.55 11.48 Chip2 T1D_6 T1D TGCAGCGTGGGGACAGGGGGCACTAATGAAAAACTGTTTTTT CSVGTGGTNEKLFF TRBV29-1*01 TRBJ1-4*01 9.0 128.0 _CSVGTGGTNEKLFF 638 2672 EBV-BLMF1 EBV 0.8 2531 NEG 165 2507 9 EBV BLMF1 GLCTLVAML effector memory T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*02:01 B2M MHCI -8570 chip0423_232062 14.16 12.85 Chip2 T1D_5 T1D TGTGCCAGCAGCTTAGTACAGGGTGTCCACAATGAGCAGTTCTTC CASSLVQGVHNEQFF TRBV7-9*01 TRBJ2-1*01 60.0 3970.0 _CASSLVQGVHNEQFF 3 2089 BZLF1-190-197 EBV 0.53 2156 NEG 157 1932 12 EBV BZLF1 RAKFKQLL effector T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-B*08:01 B2M MHCI -8571 chip0423_832018 8.71 11.48 Chip2 T1D_5 T1D TGCATCGTCTTTAACGACTACAAGCTCAGTTTT CIVFNDYKLSF TRAV26-1*01 TRAJ20*01 16.0 2008.0 TGTGCCAGCAGGGGAGCGGGGGGACGAACGACCGGGGAGCTGTTTTT CASRGAGgg?TNDRGAVF TRBV27*01 TRBJ2-2*01 22.0 1023.0 CIVFNDYKLSF_CASRGAGgg?TNDRGAVF 1 4317 G6PC2-YLK-8 IGRP 0.71 27 G6PC2-YLK-8 132 4185 7 HomoSapiens G6PC2 YLKTNLFL transitional T cells between effector and memory populations PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-B*08:01 B2M MHCI -8572 chip0423_637274 13.3 11.34 Chip2 T1D_5 T1D TGTGCCAGCAGCTCCGGACTAGCGGGGGGCTCTCACACCGGGGAGCTGTTTTTT CASSSGLAGGSHTGELFF TRBV11-1*01 TRBJ2-2*01 21.0 824.0 _CASSSGLAGGSHTGELFF 14 3574 BZLF1-190-197 EBV 0.6 2156 NEG 150 3424 9 EBV BZLF1 RAKFKQLL effector memory T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-B*08:01 B2M MHCI -8573 chip0423_107733 12.45 13.08 Chip2 T1D_4 T1D TGCATCGTCAGAGAGGGAGGAGGTGCTGACGGACTCACCTTT CIVREGGGADGLTF TRAV26-1*01 TRAJ45*01 46.0 2419.0 TGTGCCAGCAGCTTAGCGGTCGGAGAAGGGCCCCAGCATTTT CASSLAVGEGPQHF TRBV7-9*01 TRBJ1-5*01 27.0 866.0 CIVREGGGADGLTF_CASSLAVGEGPQHF 68 3490 BZLF1-190-197 EBV 0.81 2156 BZLF1-190-197 159 3331 11 EBV BZLF1 RAKFKQLL effector T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-B*08:01 B2M MHCI -8574 chip0423_45180 9.62 9.06 Chip2 healthy_4 healthy TGTGTGGTGAACCCCTCTAGAGGCAAAGCTGCAGGCAACAAGCTAACTTTT CVVNPSRGKAAGNKLTF TRAV12-1*01 TRAJ17*01 109.0 3043.0 TGCGCCAGCAGCTTGGAGGGACAGGCCAGCTCCTACGAGCAGTACTTC CASSLEGQASSYEQYF TRBV5-1*01 TRBJ2-7*01 15.0 466.0 CVVNPSRGKAAGNKLTF_CASSLEGQASSYEQYF 1 3973 BZLF1-190-197 EBV 0.58 2156 NEG 152 3821 8 EBV BZLF1 RAKFKQLL effector memory T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-B*08:01 B2M MHCI -8575 chip0423_434955 9.92 10.65 Chip2 T1D_4 T1D TGCAGCGTTGGAAGCGGGGATTACGAGCAGTACTTC CSVGSGDYEQYF TRBV29-1*01 TRBJ2-7*01 33.0 2381.0 _CSVGSGDYEQYF 2 4093 BZLF1-190-197 EBV 0.42 2156 NEG 146 3947 9 EBV BZLF1 RAKFKQLL effector memory T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-B*08:01 B2M MHCI -8576 chip0423_369946 13.15 8.39 Chip2 T1D_5 T1D TGTGCAGCAAGTGAAACCTCCTACGACAAGGTGATATTT CAASETSYDKVIF TRAV13-1*01 TRAJ50*01 11.0 1255.0 TGTGCCAGCAGCTTACTAGGGACGGTCGACAATGAGCAGTTCTTC CASSLLGTVDNEQFF TRBV7-9*01 TRBJ2-1*01 61.0 4047.0 CAASETSYDKVIF_CASSLLGTVDNEQFF 1 2996 BZLF1-190-197 EBV 0.43 2156 NEG 133 2863 10 EBV BZLF1 RAKFKQLL effector memory T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-B*08:01 B2M MHCI -8577 chip0423_871463 12.61 10.92 Chip2 T1D_5 T1D TGTGCCAGCCAACTAGCGGGAGGCACCGGGGAGCTGTTTTTT CASQLAGGTGELFF TRBV24-1*01 TRBJ2-2*01 11.0 331.0 _CASQLAGGTGELFF 69 4583 BZLF1-190-197 EBV 0.67 2156 NEG 143 4440 9 EBV BZLF1 RAKFKQLL effector memory T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-B*08:01 B2M MHCI -8578 chip0423_244309 -0.36 9.67 Chip2 healthy_3 healthy TGTGCCGTGCGAACCCCTCTTGTCTTT CAVRTPLVF TRAV12-2*01 TRAJ29*01 1.0 40.0 TGCAGTGCTAGTTACGGGAGTGGTAATGAGCAGTTCTTC CSASYGSGNEQFF TRBV20-1*01 TRBJ2-1*01 45.0 2953.0 CAVRTPLVF_CSASYGSGNEQFF 1 8565 PGT-178 PGT 0.54 1480 PGT-178 162 8403 3 HomoSapiens PGT LLAGIGTVPI Naive T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*02:01 B2M MHCI -8579 chip0423_159982 -3.27 13.87 Chip2 T1D_4 T1D TGTGTTGTGAGTGATACGAACCAGGCAGGAACTGCTCTGATCTTT CVVSDTNQAGTALIF TRAV8-2*01 TRAJ15*01 1.0 34.0 TGTGCCAGCAGCCCCCTCGCGGGGGGGGGCACAGATACGCAGGATTTT CASSPLAGGGTDTQDF TRBV6-1*01 TRBJ2-3*01 4.0 90.0 CVVSDTNQAGTALIF_CASSPLAGGGTDTQDF 1 3021 HCV-K1S HCV 0.8 10 NEG 121 2900 1 HCV POL SLVALGINAV Naive T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*02:01 B2M MHCI -8580 chip0423_313012 15.23 10.7 Chip2 T1D_5 T1D TGTGCAGCGGCGGAAACCTCCTACGACAAGGTGATATTT CAAAETSYDKVIF TRAV13-1*01 TRAJ50*01 15.0 1996.0 TGTGCCAGCCAACTAGCGGGAGGCACCGGGGAGCTGTTTTTT CASQLAGGTGELFF TRBV24-1*01 TRBJ2-2*01 22.0 1310.0 CAAAETSYDKVIF_CASQLAGGTGELFF 131 2925 BZLF1-190-197 EBV 1.0 2156 NEG 126 2799 12 EBV BZLF1 RAKFKQLL effector T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-B*08:01 B2M MHCI -8581 chip0423_182813 -4.54 9.17 Chip2 healthy_3 healthy TGTGGAGCAGGCACCGCCGCCTACAAGCTCAGCTTT CGAGTAAYKLSF TRAV34*01 TRAJ20*01 1.0 30.0 CGAGTAAYKLSF_ 1 7538 GP160-311-320 HIV 0.47 109 NEG 150 7388 2 HIV-1 GP160 RGPGRAFVTI Naive T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*02:01 B2M MHCI -8582 chip0423_60057 11.46 8.37 Chip2 T1D_5 T1D TGTGCAGCAATCGAAACCTCCTACGACAAGGTGATATTT CAAIETSYDKVIF TRAV13-1*01 TRAJ50*01 3.0 127.0 TGCAGCGTTGGGGGGAACACTGAAGCTTTCTTT CSVGGNTEAFF TRBV29-1*01 TRBJ1-1*01 109.0 7904.0 CAAIETSYDKVIF_CSVGGNTEAFF 4 3550 BZLF1-190-197 EBV 0.65 2156 NEG 121 3429 10 EBV BZLF1 RAKFKQLL effector memory T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-B*08:01 B2M MHCI -8583 chip0423_589206 -2.91 9.04 Chip2 T1D_4 T1D TGTGCTGTGAGTGACCCATACAACTTCAACAAATTTTACTTT CAVSDPYNFNKFYF TRAV8-6*01 TRAJ21*01 22.0 900.0 TGTGCCAGCACTCCAACGGCCGGGGCCTCCAATGAGCAGTTCTTC CASTPTAGASNEQFF TRBV27*01 TRBJ2-1*01 35.0 2477.0 CAVSDPYNFNKFYF_CASTPTAGASNEQFF 1 7405 EBV-BRLF1 EBV 0.41 1264 NEG 144 7261 2 EBV BRLF1 YVLDHLIVV Naive T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*02:01 B2M MHCI -8584 chip0423_380257 -1.59 10.68 Chip2 T1D_6 T1D TGTGCTGTGAGCCTCGGCGCGGGCAAGTCCACCTTT CAVSLGAGKSTF TRAV8-4*01 TRAJ27*01 10.0 578.0 TGTGCCAGCAGCTTAACTGGGGGGAATATGAACACTGAAGCTTTCTTT CASSLTGGNMNTEAFF TRBV7-3*01 TRBJ1-1*01 9.0 170.0 CAVSLGAGKSTF_CASSLTGGNMNTEAFF 1 5600 PA-46-54 FLU 0.5 18 NEG 152 5448 3 InfluenzaA PA FMYSDFHFI Naive T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*02:01 B2M MHCI -8585 chip0423_285520 11.83 8.03 Chip2 T1D_6 T1D TGCATCCTGCCTCTTCCTGGTGGTACTAGCTTTGGCCAGCTGACAGTT CILPLPGGTSFGQLTV TRAV26-2*01 TRAJ52*01 5.0 126.0 TGTGCCAGCAGCTTGGGACAGGCCTACGAGCAGTACTTC CASSLGQAYEQYF TRBV7-8*01 TRBJ2-7*01 12.0 691.0 CILPLPGGTSFGQLTV_CASSLGQAYEQYF 1 4363 EBNA3A-193-201 EBV 1.0 1022 EBNA3A-193-201 172 4191 10 EBV EBNA3A FLRGRAYGL effector memory T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-B*08:01 B2M MHCI -8586 chip0423_218029 11.78 7.27 Chip2 T1D_6 T1D TGCGCCAGCAGCGTTAGCGGGGCCCCCTACGAGCAGTACTTC CASSVSGAPYEQYF TRBV9*01 TRBJ2-7*01 16.0 1810.0 _CASSVSGAPYEQYF 21 4574 EBNA3A-193-201 EBV 0.6 1022 NEG 151 4423 10 EBV EBNA3A FLRGRAYGL effector memory T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-B*08:01 B2M MHCI -8587 chip0423_797252 -3.18 9.2 Chip2 T1D_6 T1D TGTGCAATGAGCCACACGGGCAGGAGAGCACTTACTTTT CAMSHTGRRALTF TRAV12-3*01 TRAJ5*01 21.0 1482.0 TGCGCCAGCAGCCAAGGGGGCGAGCAGTACTTC CASSQGGEQYF TRBV4-1*01,TRBV4-3*01 TRBJ2-7*01 4.0 189.0 CAMSHTGRRALTF_CASSQGGEQYF 1 6020 IAPP-LNH-9 IAPP 0.41 15 NEG 152 5868 2 HomoSapiens IAPP LNHLKATPI Naive T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-B*08:01 B2M MHCI -8588 chip0423_760909 11.76 8.07 Chip2 T1D_5 T1D TGTGCCAGCAGCCCTACGACGGCTCGGACAGGGAATGGCTACACCTTC CASSPTTARTGNGYTF TRBV3-1*01 TRBJ1-2*01 14.0 710.0 _CASSPTTARTGNGYTF 1 3283 BZLF1-190-197 EBV 0.67 2156 NEG 157 3126 10 EBV BZLF1 RAKFKQLL effector memory T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-B*08:01 B2M MHCI -8589 chip0423_619590 -1.52 8.32 Chip2 healthy_3 healthy TGTGCTGTCTCTGATGGAAACAAACTGGTCTTT CAVSDGNKLVF TRAV29/DV5*01 TRAJ47*01 12.0 1439.0 TGTGCCAGCAGTTGGGCGGGAGGGTACGAGCAGTACTTC CASSWAGGYEQYF TRBV27*01 TRBJ2-7*01 14.0 1083.0 CAVSDGNKLVF_CASSWAGGYEQYF 1 9150 ZNT8-153-161 ZNT8 0.68 41 ZNT8-153-161 137 9013 4 HomoSapiens ZNT8 VVTGVLVYL Naive T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*02:01 B2M MHCI -8590 chip0423_484978 10.66 9.12 Chip2 T1D_5 T1D TGTGCAGCAAGTGAAACCTCCTACGACAAGGTGATATTT CAASETSYDKVIF TRAV13-1*01 TRAJ50*01 23.0 2005.0 TGTGCCAGCAGCTGGCTCGGGGATCGGTATAATTCACCCCTCCACTTT CASSWLGDRYNSPLHF TRBV7-9*01 TRBJ1-6*01 71.0 2541.0 CAASETSYDKVIF_CASSWLGDRYNSPLHF 65 3596 BZLF1-190-197 EBV 0.58 2156 NEG 150 3446 10 EBV BZLF1 RAKFKQLL effector memory T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-B*08:01 B2M MHCI -8591 chip0423_762892 -2.04 12.83 Chip2 T1D_4 T1D TGTGCAATGTCTTGGGGGAATAATGCAGGCAACATGCTCACCTTT CAMSWGNNAGNMLTF TRAV12-3*01 TRAJ39*01 34.0 1584.0 CAMSWGNNAGNMLTF_ 1 4607 PGT-178 PGT 0.44 1480 NEG 139 4468 1 HomoSapiens PGT LLAGIGTVPI Naive T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*02:01 B2M MHCI -8592 chip0423_583234 8.94 9.37 Chip2 T1D_5 T1D TGTGCCAGCAGCTTACTCGGGGGGGCCGCGGGTGAGCAGTTCTTC CASSLLGGAAGEQFF TRBV7-9*01 TRBJ2-1*01 5.0 366.0 _CASSLLGGAAGEQFF 3 6564 BZLF1-190-197 EBV 0.42 2156 NEG 143 6421 8 EBV BZLF1 RAKFKQLL effector memory T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-B*08:01 B2M MHCI -8593 chip0423_570773 15.19 12.75 Chip2 T1D_4 T1D TGTGCCAGCAGTTTATCAGTTAGCAGCTACACAGATACGCAGTATTTT CASSLSVSSYTDTQYF TRBV27*01 TRBJ2-3*01 32.0 1493.0 _CASSLSVSSYTDTQYF 1 2521 EBV-BRLF1 EBV 0.91 1264 NEG 158 2363 12 EBV BRLF1 YVLDHLIVV effector T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*02:01 B2M MHCI -8594 chip0423_425988 -3.76 11.06 Chip2 healthy_3 healthy TGTGCCAGCAGTCTTCTGGGGGTACCTAGCACAGATACGCAGTATTTT CASSLLGVPSTDTQYF TRBV12-3*01,TRBV12-4*01 TRBJ2-3*01 8.0 460.0 _CASSLLGVPSTDTQYF 1 5205 PGT-178 PGT 0.86 1480 NEG 130 5075 4 HomoSapiens PGT LLAGIGTVPI Naive T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*02:01 B2M MHCI -8595 chip0423_2201 6.92 9.78 Chip2 healthy_3 healthy TGTGCTGTGAGAGACATCCCAGGGGATAGCAACTATCAGTTAATCTGG CAVRDIPGDSNYQLIW TRAV3*01 TRAJ33*01 145.0 5114.0 TGCAGTGCTCGGGACAGCACTCTCCCCGATAATTCACCCCTCCACTTT CSARDSTLPDNSPLHF TRBV20-1*01 TRBJ1-6*01 12.0 578.0 CAVRDIPGDSNYQLIW_CSARDSTLPDNSPLHF 1 13210 PB1-590-599 FLU 0.52 37 PB1-590-599 183 13027 7 InfluenzaA PB1 LVSDGGPNLY transitional T cells between effector and memory populations PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*01:01 B2M MHCI -8596 chip0423_617823 5.16 11.17 Chip2 healthy_3 healthy TGTGCCAGCAGTCCTAGAGGGGGCGGGGAGCTGTTTTTT CASSPRGGGELFF TRBV28*01 TRBJ2-2*01 3.0 98.0 _CASSPRGGGELFF 1 6803 NP140-148 FLU 0.83 102 NP140-148 144 6659 6 InfluenzaA NP HSNLNDATY central memory T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*01:01 B2M MHCI -8597 chip0423_403804 -2.75 14.41 Chip2 T1D_6 T1D _ 6746 2718 MART1-ALA MART1 0.78 269 NEG 127 2591 1 HomoSapiens MART1 ALAGIGILTV Naive T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*02:01 B2M MHCI -8598 chip0423_491664 12.39 10.36 Chip2 T1D_6 T1D TGCATCCTCCCACTTGCTGGTGGTACTAGCTATGGAAAGCTGACATTT CILPLAGGTSYGKLTF TRAV26-2*01 TRAJ52*01 49.0 2588.0 TGTGCCAGCAGCTTGGGACAGGCCTACGAGCAGTACTTC CASSLGQAYEQYF TRBV7-8*01 TRBJ2-7*01 20.0 1442.0 CILPLAGGTSYGKLTF_CASSLGQAYEQYF 308 4066 EBNA3A-193-201 EBV 0.69 1022 EBNA3A-193-201 162 3904 9 EBV EBNA3A FLRGRAYGL effector memory T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-B*08:01 B2M MHCI -8599 chip0423_70708 12.88 10.82 Chip2 T1D_5 T1D TGTGCCAGCACCCAGGTAGACAGACCCAACTATGGCTACACCTTC CASTQVDRPNYGYTF TRBV7-9*01 TRBJ1-2*01 24.0 972.0 _CASTQVDRPNYGYTF 5 2599 BZLF1-190-197 EBV 0.67 2156 NEG 143 2456 9 EBV BZLF1 RAKFKQLL effector memory T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-B*08:01 B2M MHCI -8600 chip0423_234451 15.63 12.41 Chip2 T1D_5 T1D TGTGCAATGAGGGCCATTGAGGGGGCAAACAACCTCTTCTTT CAMRAIEGANNLFF TRAV14/DV4*01 TRAJ36*01 38.0 1672.0 CAMRAIEGANNLFF_ 17 2118 BZLF1-190-197 EBV 0.62 2156 NEG 136 1982 12 EBV BZLF1 RAKFKQLL effector T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-B*08:01 B2M MHCI -8601 chip0423_99044 10.31 11.56 Chip2 T1D_4 T1D TGTGCAATGAGCTATAGTGGAGGTAGCAACTATAAACTGACATTT CAMSYSGGSNYKLTF TRAV12-3*01 TRAJ53*01 17.0 660.0 TGCAGCGTTGGAAGCGGGGATTACGAGCAGTACTTC CSVGSGDYEQYF TRBV29-1*01 TRBJ2-7*01 32.0 2329.0 CAMSYSGGSNYKLTF_CSVGSGDYEQYF 2 4479 BZLF1-190-197 EBV 0.45 2156 NEG 146 4333 9 EBV BZLF1 RAKFKQLL effector memory T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-B*08:01 B2M MHCI -8602 chip0423_453397 -3.65 8.07 Chip2 T1D_4 T1D TGTGCTTATAGGATGAATTATGGAGGAAGCCAAGGAACTCTCATCTTT CAYRMNYGGSQGTLIF TRAV38-2/DV8*01 TRAJ42*01 16.0 398.0 TGTGCCAGCAGCTTTCAGGGGGGCCATGAGCAGTTCTTC CASSFQGGHEQFF TRBV7-2*01 TRBJ2-1*01 8.0 418.0 CAYRMNYGGSQGTLIF_CASSFQGGHEQFF 1 4632 GAD2-EAK-10 GAD65 0.5 14 NEG 153 4479 2 HomoSapiens GAD2 EAKQKGFVPF Naive T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-B*08:01 B2M MHCI -8603 chip0423_446112 11.95 9.55 Chip2 T1D_4 T1D TGTGCCAGCAGCTTAGCGGTCGGAGAAGGGCCCCAGCATTTT CASSLAVGEGPQHF TRBV7-9*01 TRBJ1-5*01 61.0 2109.0 _CASSLAVGEGPQHF 113 3315 BZLF1-190-197 EBV 0.81 2156 BZLF1-190-197 162 3153 10 EBV BZLF1 RAKFKQLL effector memory T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-B*08:01 B2M MHCI -8604 chip0423_351071 12.57 6.48 Chip2 T1D_5 T1D TGCAGCGTTGGAACAAGCTATGGCTACACCTTC CSVGTSYGYTF TRBV29-1*01 TRBJ1-2*01 87.0 8350.0 _CSVGTSYGYTF 6 4406 BZLF1-190-197 EBV 0.75 2156 NEG 151 4255 10 EBV BZLF1 RAKFKQLL effector memory T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-B*08:01 B2M MHCI -8605 chip0423_856296 -2.61 14.41 Chip2 T1D_6 T1D TGTGCCAGCAGCCGAGGGGACGGGGAGCTGTTTTTT CASSRGDGELFF TRBV12-3*01,TRBV12-4*01 TRBJ2-2*01 10.0 945.0 _CASSRGDGELFF 1 3408 PPI-29-38 INS 0.78 6 NEG 147 3261 1 HomoSapiens PPI HLCGSHLVEA Naive T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*02:01 B2M MHCI -8606 chip0423_693365 -2.13 10.56 Chip2 T1D_5 T1D TGCAGCGTTTCTCCGGGACAGGGCTACGAGCAGTACTTC CSVSPGQGYEQYF TRBV29-1*01 TRBJ2-7*01 102.0 8101.0 _CSVSPGQGYEQYF 1 5236 G6PC2-LTS-10 IGRP 0.78 59 G6PC2-LTS-10 163 5073 3 HomoSapiens G6PC2 LTSLTILQLY Naive T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*01:01 B2M MHCI -8607 chip0423_170877 11.28 10.33 Chip2 T1D_4 T1D TGTGCCGTGACCTTCAACCGGCACTGCCAGTAAACTCACCTTT CAVTFNR??cTASKLTF TRAV8-1*01 TRAJ44*01 40.0 2013.0 TGCGCCAGCAGCTTGGAGGGACAGGCCAGCTCCTACGAGCAGTACTTC CASSLEGQASSYEQYF TRBV5-1*01 TRBJ2-7*01 82.0 4136.0 CAVTFNR??cTASKLTF_CASSLEGQASSYEQYF 1 4849 EBV-LMP2A EBV 0.92 700 NEG 144 4705 9 EBV LMP2A CLGGLLTMV effector memory T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*02:01 B2M MHCI -8608 chip0423_21521 7.07 12.96 Chip2 T1D_6 T1D TGTGCTGTGGGGACCATGGCTCTAGCAACACAGGCAAACTAATCTTT CAVGTMAct?SNTGKLIF TRAV8-3*01 TRAJ37*01 68.0 1997.0 CAVGTMAct?SNTGKLIF_ 3 4488 NP380-388 FLU 0.55 60 NEG 154 4334 7 InfluenzaA NP ELRSRYWAI transitional T cells between effector and memory populations PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-B*08:01 B2M MHCI -8609 chip0423_575494 5.12 10.41 Chip2 healthy_4 healthy TGCGCCAGCAGCCACACCCAGGGGGGTACGCAGTATTTT CASSHTQGGTQYF TRBV4-1*01 TRBJ2-3*01 21.0 884.0 _CASSHTQGGTQYF 1 5396 INS-14-23 INS 0.76 9 INS-14-23 141 5255 6 HomoSapiens INS LALWGPDPAA central memory T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*02:01 B2M MHCI -8610 chip0423_130925 -3.64 12.71 Chip2 T1D_6 T1D TGTGCCAGCAGCCCGGGACTAATGAACACCGGGGAGCTGTTTTTT CASSPGLMNTGELFF TRBV12-3*01,TRBV12-4*01 TRBJ2-2*01 39.0 1759.0 _CASSPGLMNTGELFF 1 4313 MART1-ALA MART1 0.5 269 NEG 119 4194 1 HomoSapiens MART1 ALAGIGILTV Naive T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*02:01 B2M MHCI -8611 chip0423_858261 12.79 8.75 Chip2 T1D_6 T1D TGCAGCGCCGGCAGGGACGGGACTAATGAAAAACTGTTTTTT CSAGRDGTNEKLFF TRBV29-1*01 TRBJ1-4*01 106.0 5497.0 _CSAGRDGTNEKLFF 159 3897 EBV-BLMF1 EBV 0.45 2531 NEG 160 3737 10 EBV BLMF1 GLCTLVAML effector memory T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*02:01 B2M MHCI -8612 chip0423_360786 -2.91 13.36 Chip2 T1D_6 T1D TGTGCCAGCAGCTTAGCGCCAGGGGGCTACGAGCAGTACTTC CASSLAPGGYEQYF TRBV7-2*01 TRBJ2-7*01 2.0 36.0 _CASSLAPGGYEQYF 1 4917 ZNT8-YAK-9 ZNT8 0.89 59 NEG 132 4785 1 HomoSapiens ZNT8 YAKWKLCSA Naive T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-B*08:01 B2M MHCI -8613 chip0423_231767 13.31 11.76 Chip2 T1D_5 T1D TGTGCAGAGATGGAAACCTCCTACGACAAGGTGATATTT CAEMETSYDKVIF TRAV13-2*01 TRAJ50*01 17.0 2123.0 TGTGCCAGCACCCACCCCCAGGATGTGAACACCGGGGAGCTGTTTTTT CASTHPQDVNTGELFF TRBV7-9*01 TRBJ2-2*01 52.0 2030.0 CAEMETSYDKVIF_CASTHPQDVNTGELFF 8 2635 BZLF1-190-197 EBV 0.86 2156 NEG 146 2489 9 EBV BZLF1 RAKFKQLL effector memory T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-B*08:01 B2M MHCI -8614 chip0423_144221 -1.12 7.39 Chip2 T1D_5 T1D TGTGCCAGCAGCGGCAGGGGAGGCTTTTATGGCTACACCTTC CASSGRGGFYGYTF TRBV7-9*01 TRBJ1-2*01 35.0 1664.0 _CASSGRGGFYGYTF 1 7886 gp160-586-593 HIV 0.84 30 gp160-586-593 124 7762 3 HIV-1 gp160 YLKDQQLL Naive T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-B*08:01 B2M MHCI -8615 chip0423_134939 -2.03 9.59 Chip2 T1D_6 T1D TGTGCCAGCAGCCACAGGGGAACTGAAGCTTTCTTT CASSHRGTEAFF TRBV28*01 TRBJ1-1*01 4.0 160.0 _CASSHRGTEAFF 1 5235 PGT-178 PGT 0.75 1480 NEG 141 5094 4 HomoSapiens PGT LLAGIGTVPI Naive T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*02:01 B2M MHCI -8616 chip0423_110397 -1.92 9.35 Chip2 healthy_3 healthy TGCAGTGCGCCCGGGACTAGCGGATCACAGGAAGAGACCCAGTACTTC CSAPGTSGSQEETQYF TRBV20-1*01 TRBJ2-5*01 18.0 1008.0 _CSAPGTSGSQEETQYF 1 6525 ZNT8-114-123 ZNT8 0.5 2 NEG 146 6379 4 HomoSapiens ZNT8 FLLSLFSLWL Naive T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*02:01 B2M MHCI -8617 chip0423_882609 -2.47 9.74 Chip2 T1D_5 T1D TGTGCTTTCACCCTCTGGGGGAATGAGAAATTAACCTTT CAFTLWGNEKLTF TRAV38-1*01 TRAJ48*01 1.0 98.0 TGTGCCAGCGGGGGGCCAGGGAATGACTATGGCTACACCTTC CASGGPGNDYGYTF TRBV5-6*01 TRBJ1-2*01 4.0 251.0 CAFTLWGNEKLTF_CASGGPGNDYGYTF 1 6827 NP225-233 FLU 0.53 23 NEG 166 6661 3 InfluenzaA NP ILKGKFQTA Naive T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-B*08:01 B2M MHCI -8618 chip0423_3258 16.43 10.96 Chip2 healthy_3 healthy _ 6746 2310 GAD65-114-122 GAD65 0.56 63 NEG 140 2170 12 HomoSapiens GAD65 VMNILLQYV effector T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*02:01 B2M MHCI -8619 chip0423_358599 11.06 10.38 Chip2 T1D_4 T1D TGTGCTGTGAGTGATGGAGAAGGAGCCCAGCAGCTGGTATTT CAVSDGEGAQQLVF TRAV8-6*01 TRAJ54*01 46.0 2016.0 TGTGCCAGCAGCTTAACGGTTCTGGCAGGTCCAAACACTGAAGCTTTCTTT CASSLTVLAGPNTEAFF TRBV7-3*01 TRBJ1-1*01 59.0 2032.0 CAVSDGEGAQQLVF_CASSLTVLAGPNTEAFF 3 5768 BZLF1-190-197 EBV 0.95 2156 BZLF1-190-197 158 5610 9 EBV BZLF1 RAKFKQLL effector memory T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-B*08:01 B2M MHCI -8620 chip0423_568251 9.17 9.7 Chip2 T1D_6 T1D TGCAGCGCCGGCAGGGACGGGACTAATGAAAAACTGTTTTTT CSAGRDGTNEKLFF TRBV29-1*01 TRBJ1-4*01 92.0 5114.0 _CSAGRDGTNEKLFF 159 7325 EBV-BLMF1 EBV 0.88 2531 NEG 150 7175 8 EBV BLMF1 GLCTLVAML effector memory T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*02:01 B2M MHCI -8621 chip0423_402838 10.72 11.76 Chip2 T1D_5 T1D TGTGCAGCGGCGGAAACCTCCTACGACAAGGTGATATTT CAAAETSYDKVIF TRAV13-1*01 TRAJ50*01 2.0 69.0 TGTGCCAGCCAACTAGCGGGAGGCACCGGGGAGCTGTTTTTT CASQLAGGTGELFF TRBV24-1*01 TRBJ2-2*01 34.0 1649.0 CAAAETSYDKVIF_CASQLAGGTGELFF 131 3039 BZLF1-190-197 EBV 0.57 2156 NEG 130 2909 9 EBV BZLF1 RAKFKQLL effector memory T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-B*08:01 B2M MHCI -8622 chip0423_293396 11.7 7.58 Chip2 healthy_4 healthy TGTGCCAGCAGCTCCGGACAGGCCTACGAGCAGTACTTC CASSSGQAYEQYF TRBV7-8*01 TRBJ2-7*01 18.0 1039.0 _CASSSGQAYEQYF 49 4572 EBNA3A-193-201 EBV 0.93 1022 NEG 156 4416 10 EBV EBNA3A FLRGRAYGL effector memory T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-B*08:01 B2M MHCI -8623 chip0423_571026 11.92 9.44 Chip2 T1D_4 T1D TGTGCTGTGAGTGATGGAGAAGGAGCCCAGAAGCTGGTATTT CAVSDGEGAQKLVF TRAV8-6*01 TRAJ54*01 24.0 981.0 TGTGCCAGCAGCTTAACGGTTCTGGCAGGTCCAAACACTGAAGCTTTCTTT CASSLTVLAGPNTEAFF TRBV7-3*01 TRBJ1-1*01 46.0 1556.0 CAVSDGEGAQKLVF_CASSLTVLAGPNTEAFF 44 3967 BZLF1-190-197 EBV 0.8 2156 BZLF1-190-197 150 3817 10 EBV BZLF1 RAKFKQLL effector memory T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-B*08:01 B2M MHCI -8624 chip0423_548223 -3.2 12.67 Chip2 T1D_6 T1D TGTGCCAGCAGTTACGCCACCGGCCACCTAGGCCCTAGCACAGACACGCAGTATTTT CASSYATGHLGPSTDTQYF TRBV6-2*01,TRBV6-3*01 TRBJ2-3*01 6.0 49.0 _CASSYATGHLGPSTDTQYF 1 3682 GFAP-HLK-8 GFAP 1.0 28 NEG 134 3548 1 HomoSapiens GFAP HLKRNIVV Naive T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-B*08:01 B2M MHCI -8625 chip0423_538656 8.74 8.01 Chip2 T1D_4 T1D TGTGCTGTGGGGGAGAACTATGGTCAGAATTTTGTCTTT CAVGENYGQNFVF TRAV21*01 TRAJ26*01 31.0 2147.0 TGCGCCAGCCTACCCACTCCACATTCGGACTCGGGCAATTCGAACACTGAAGCTTTCTTT CASLPTPHSDSGNSNTEAFF TRBV5-1*01 TRBJ1-1*01 10.0 197.0 CAVGENYGQNFVF_CASLPTPHSDSGNSNTEAFF 2 6472 BZLF1-190-197 EBV 0.57 2156 BZLF1-190-197 171 6301 8 EBV BZLF1 RAKFKQLL effector memory T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-B*08:01 B2M MHCI -8626 chip0423_354654 11.59 10.88 Chip2 T1D_4 T1D _ 6746 3197 BZLF1-190-197 EBV 0.94 2156 BZLF1-190-197 123 3074 9 EBV BZLF1 RAKFKQLL effector memory T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-B*08:01 B2M MHCI -8627 chip0423_491817 8.68 9.97 Chip2 healthy_4 healthy TGTGCCAGCAGCTCCGGACAGGCCTACGAGCAGTACTTC CASSSGQAYEQYF TRBV7-8*01 TRBJ2-7*01 2.0 29.0 _CASSSGQAYEQYF 49 4196 EBNA3A-193-201 EBV 0.94 1022 EBNA3A-193-201 168 4028 8 EBV EBNA3A FLRGRAYGL effector memory T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-B*08:01 B2M MHCI -8628 chip0423_460572 5.03 12.12 Chip2 healthy_4 healthy _ 6746 2932 M1 FLU 1.0 1250 NEG 134 2798 6 InfluenzaA M1 GILGFVFTL central memory T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*02:01 B2M MHCI -8629 chip0423_305194 12.61 7.8 Chip2 T1D_5 T1D TGTGCAGCTCTCGAAACCTCCTACGACAAGGTGATATTT CAALETSYDKVIF TRAV13-1*01 TRAJ50*01 46.0 4215.0 TGTGCCAGCAGTCCCGACGGATCCACCGGGGAGCTGTTTTTT CASSPDGSTGELFF TRBV12-3*01,TRBV12-4*01 TRBJ2-2*01 85.0 4358.0 CAALETSYDKVIF_CASSPDGSTGELFF 14 3592 BZLF1-190-197 EBV 0.89 2156 NEG 150 3442 10 EBV BZLF1 RAKFKQLL effector memory T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-B*08:01 B2M MHCI -8630 chip0423_130139 12.19 8.7 Chip2 T1D_6 T1D TGCATCCTCCCACTTGCTGGTGGTACTCGCTCTGGGGCGCTGACATTT CILPLAGGTRSGALTF TRAV26-2*01 TRAJ52*01 25.0 1231.0 TGTGCCAGCAGCTTGGGACAGGCCTACGAGCAGTACTTC CASSLGQAYEQYF TRBV7-8*01 TRBJ2-7*01 27.0 1677.0 CILPLAGGTRSGALTF_CASSLGQAYEQYF 1 2593 EBNA3A-193-201 EBV 0.8 1022 NEG 126 2467 10 EBV EBNA3A FLRGRAYGL effector memory T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-B*08:01 B2M MHCI -8631 chip0423_25673 16.61 10.87 Chip2 T1D_5 T1D TGTGCCAGTAGTATGATGACAGGGGATTCCTATAATTCACCCCTCCACTTT CASSMMTGDSYNSPLHF TRBV19*01 TRBJ1-6*01 22.0 554.0 _CASSMMTGDSYNSPLHF 3 2910 NP44-52 FLU 0.92 474 NP44-52 156 2754 12 InfluenzaA NP CTELKLSDY effector T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*01:01 B2M MHCI -8632 chip0423_7676 -2.76 8.09 Chip2 T1D_5 T1D TGTGCCAGCAGCTTGAATCGAAATCAGCCCCAGCATTTT CASSLNRNQPQHF TRBV7-3*01 TRBJ1-5*01 37.0 1366.0 _CASSLNRNQPQHF 1 7853 INS-LWM-8 INS 0.5 11 NEG 160 7693 2 HomoSapiens INS LWMRLLPL Naive T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-B*08:01 B2M MHCI -8633 chip0423_298023 11.17 8.09 Chip2 T1D_5 T1D TGTGCCAGCAGCTCCCTCGGCCAGAAGAACACTGAAGCTTTCTTT CASSSLGQKNTEAFF TRAV36/DV7*01 TRAJ40*01 2.0 7.0 TGTGCCAGCAGCTCCCTCGGACAGAAGAACACTGAAGCTTTCTTT CASSSLGQKNTEAFF TRBV7-9*01 TRBJ1-1*01 54.0 2240.0 CASSSLGQKNTEAFF_CASSSLGQKNTEAFF 2 3643 BZLF1-190-197 EBV 0.61 2156 BZLF1-190-197 159 3484 10 EBV BZLF1 RAKFKQLL effector memory T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-B*08:01 B2M MHCI -8634 chip0423_182778 10.9 6.68 Chip2 T1D_5 T1D TGCATCGTTTGACACGTATTCAGGTGGAGGTGCTGCCGGGCTCACCTTT CIV*HVFR??tGGAAGLTF TRAV26-1*01 TRAJ45*01 14.0 635.0 TGTGCCAGCAGTCCCGCGGACTCTAATTTCGAGGACGAGCAGTACTTC CASSPADSNFEDEQYF TRBV12-3*01,TRBV12-4*01 TRBJ2-7*01 26.0 1287.0 CIV*HVFR??tGGAAGLTF_CASSPADSNFEDEQYF 1 6278 BZLF1-190-197 EBV 0.56 2156 NEG 144 6134 10 EBV BZLF1 RAKFKQLL effector memory T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-B*08:01 B2M MHCI -8635 chip0423_60390 -4.42 10.07 Chip2 healthy_3 healthy TGTGCCGTGAACTTACACGGTAACCATTTCTATTTT CAVNLHGNHFYF TRAV12-2*01 TRAJ49*01 14.0 1008.0 TATGCCAGCAGTTACGCGGGCCAGGGTGATGGCTACACCTTC YASSYAGQGDGYTF TRBV6-5*01 TRBJ1-2*01 23.0 945.0 CAVNLHGNHFYF_YASSYAGQGDGYTF 1 5047 PGT-178 PGT 0.5 1480 NEG 120 4927 2 HomoSapiens PGT LLAGIGTVPI Naive T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*02:01 B2M MHCI -8636 chip0423_246860 7.0 12.71 Chip2 T1D_6 T1D TGTGCTGTGGGGACCATGGCTCTAGCAACACAGGCAAACTAATCTTT CAVGTMAct?SNTGKLIF TRAV2*01 TRAJ37*01 1.0 19.0 TTTTCTGTGGGAGAATATGGAACAAACTGGTCTTT FSVGEta?WNKLVF TRAV1-2*01 TRAJ47*01 2.0 72.0 0.67 TGTGCCAGCAGCTTAGCGGGTCGTGAGGGTACGCAGTATTTT CASSLAGREGTQYF TRBV11-3*01 TRBJ2-3*01 15.0 708.0 CAVGTMAct?SNTGKLIF_CASSLAGREGTQYF 3 4828 NP380-388 FLU 0.86 60 NP380-388 170 4658 7 InfluenzaA NP ELRSRYWAI transitional T cells between effector and memory populations PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-B*08:01 B2M MHCI -8637 chip0423_249872 9.1 10.88 Chip2 T1D_5 T1D TGTGCCAGCAGCTCAGCGGGGGGGGGCCCCGAGCAGTACTTC CASSSAGGGPEQYF TRBV7-9*01 TRBJ2-7*01 24.0 915.0 _CASSSAGGGPEQYF 1 4943 BZLF1-190-197 EBV 0.8 2156 NEG 128 4815 9 EBV BZLF1 RAKFKQLL effector memory T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-B*08:01 B2M MHCI -8638 chip0423_825112 8.73 7.55 Chip2 T1D_5 T1D _ 6746 10348 BZLF1-190-197 EBV 0.46 2156 BZLF1-190-197 130 10218 8 EBV BZLF1 RAKFKQLL effector memory T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-B*08:01 B2M MHCI -8639 chip0423_770017 9.24 11.69 Chip2 T1D_5 T1D TGTGCAGCGGCGGAAACCTCCTACGACAAGGTGATATTT CAAAETSYDKVIF TRAV13-1*01 TRAJ50*01 2.0 28.0 TGTGCCAGCCAACTAGCGGGAGGCACCGGGGAGCTGTTTTTT CASQLAGGTGELFF TRBV24-1*01 TRBJ2-2*01 21.0 989.0 CAAAETSYDKVIF_CASQLAGGTGELFF 131 4330 BZLF1-190-197 EBV 0.65 2156 NEG 130 4200 9 EBV BZLF1 RAKFKQLL effector memory T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-B*08:01 B2M MHCI -8640 chip0423_756826 8.35 8.0 Chip2 tet_neg TGTGCCAGCAGCCAAGTCAACAACCCGGGGGATGGCTACACCTTC CASSQVNNPGDGYTF TRBV14*01 TRBJ1-2*01 13.0 545.0 _CASSQVNNPGDGYTF 94 8291 EBNA3A-158-166 EBV 0.55 444 NEG 143 8148 8 EBV EBNA3A QAKWRLQTL effector memory T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-B*08:01 B2M MHCI -8641 chip0423_348820 -3.52 13.01 Chip2 T1D_4 T1D TGTGCAATGACTATATCTAACTTTGGAAATGAGAAATTAACCTTT CAMTISNFGNEKLTF TRAV12-3*01 TRAJ48*01 34.0 1271.0 CAMTISNFGNEKLTF_ 2 4089 PGT-178 PGT 0.68 1480 PGT-178 139 3950 1 HomoSapiens PGT LLAGIGTVPI Naive T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*02:01 B2M MHCI -8642 chip0423_29671 14.06 9.65 Chip2 T1D_5 T1D TGTGCAGCAAGCGAAACCTCCTACGACAAGGTGATATTT CAASETSYDKVIF TRAV13-1*01 TRAJ50*01 33.0 1867.0 TGTGCCAGCAGACCCCTTGGGGGCGAGCAGTACTTC CASRPLGGEQYF TRBV6-1*01 TRBJ2-7*01 19.0 1163.0 CAASETSYDKVIF_CASRPLGGEQYF 1 6992 BZLF1-190-197 EBV 0.5 2156 NEG 148 6844 12 EBV BZLF1 RAKFKQLL effector T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-B*08:01 B2M MHCI -8643 chip0423_187372 -3.45 9.14 Chip2 T1D_4 T1D TGTGCCGCTAACCAGGCAGGAACTGCTCTGATCTTT CAANQAGTALIF TRAV12-2*01 TRAJ15*01 65.0 7511.0 TGTGCCAGCAGTCCTCTCGGTGCGCGGGGGCAGTTCTTC CASSPLGARGQFF TRBV28*01 TRBJ2-1*01 4.0 523.0 CAANQAGTALIF_CASSPLGARGQFF 1 5639 MART1-ALA MART1 0.48 269 NEG 124 5515 2 HomoSapiens MART1 ALAGIGILTV Naive T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*02:01 B2M MHCI -8644 chip0423_141615 -1.78 9.31 Chip2 T1D_6 T1D TGTGCCAGCAGTTGGACAGCCTCCTACGAGCAGTACTTC CASSWTASYEQYF TRBV27*01 TRBJ2-7*01 67.0 4101.0 _CASSWTASYEQYF 2 7381 EBV-BRLF1 EBV 0.46 1264 EBV-BRLF1 140 7241 3 EBV BRLF1 YVLDHLIVV Naive T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*02:01 B2M MHCI -8645 chip0423_509447 5.58 9.78 Chip2 healthy_3 healthy TGCGCCAACAGTGATGACGGCATGAACACTGAAGCTTTCTTT CANSDDGMNTEAFF TRBV10-2*01 TRBJ1-1*01 16.0 538.0 _CANSDDGMNTEAFF 1 6362 EBV-LMP2A EBV 0.8 700 EBV-LMP2A 127 6235 6 EBV LMP2A CLGGLLTMV central memory T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*02:01 B2M MHCI -8646 chip0423_146494 -2.63 13.66 Chip2 T1D_4 T1D TGTGCAATGAGCTTTAGTAACTTTGGAAATGAGAAATTAACCTTT CAMSFSNFGNEKLTF TRAV12-3*01 TRAJ48*01 58.0 2166.0 TGCAGTGCTACAGTGGCTAGCGGCCCTCCCACAGATACGCAGTATTTT CSATVASGPPTDTQYF TRBV20-1*01 TRBJ2-3*01 2.0 61.0 CAMSFSNFGNEKLTF_CSATVASGPPTDTQYF 1 4048 PGT-178 PGT 0.88 1480 NEG 148 3900 1 HomoSapiens PGT LLAGIGTVPI Naive T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*02:01 B2M MHCI -8647 chip0423_750562 7.89 8.78 Chip2 T1D_5 T1D TGTGCCGCGAACATCAGGTTTTCTGGTGGCTACAATAAGCTGATTTTT CAANIRFSGGYNKLIF TRAV12-2*01 TRAJ4*01 41.0 2042.0 CAANIRFSGGYNKLIF_ 1 7530 BZLF1-190-197 EBV 0.52 2156 NEG 134 7396 8 EBV BZLF1 RAKFKQLL effector memory T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-B*08:01 B2M MHCI -8648 chip0423_657461 13.61 11.99 Chip2 healthy_4 healthy TGCGCCAGCAGCTGGGGACAGGGACCTACCTACGAGCAGTACTTC CASSWGQGPTYEQYF TRBV4-1*01 TRBJ2-7*01 28.0 1170.0 _CASSWGQGPTYEQYF 5 2336 BZLF1-190-197 EBV 1.0 2156 BZLF1-190-197 134 2202 12 EBV BZLF1 RAKFKQLL effector T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-B*08:01 B2M MHCI -8649 chip0423_293030 -2.55 8.8 Chip2 T1D_4 T1D TGCGCTGTGAGAGTATTAAATTCCGGGTATGCACTCAACTTC CAVRVLNSGYALNF TRAV1-1*01 TRAJ41*01 37.0 1617.0 TGCGCCAGCAGCTTGGACAGCAGGTACACCTTC CASSLDSRYTF TRBV5-1*01 TRBJ1-2*01 10.0 629.0 CAVRVLNSGYALNF_CASSLDSRYTF 1 7471 GAD2-MAA-10 GAD65 0.81 6 GAD2-MAA-10 136 7335 2 HomoSapiens GAD2 MAALPRLIAF Naive T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-B*08:01 B2M MHCI -8650 chip0423_837112 6.14 12.46 Chip2 T1D_6 T1D TGTGCCGGGGGCCCCGATGGCCAGAAGCTGCTCTTT CAGGPDGQKLLF TRAV12-2*01 TRAJ16*01 21.0 2180.0 TGTGCCAGTAGTATCCGGGCGGCATACGAGCAGTACTTC CASSIRAAYEQYF TRBV19*01 TRBJ2-7*01 34.0 2009.0 CAGGPDGQKLLF_CASSIRAAYEQYF 1 5907 M1 FLU 0.46 1250 NEG 135 5772 7 InfluenzaA M1 GILGFVFTL transitional T cells between effector and memory populations PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*02:01 B2M MHCI -8651 chip0423_287872 -1.19 10.39 Chip2 T1D_6 T1D TGTGCTCTGAGTGGGTCAGGGCGGATCTTAGAAGCTGGTCTTT CALSGSG??cGS*KLVF TRAV19*01 TRAJ57*01 22.0 1465.0 TGTGCCAGTAGCTTAATGACAGGGAGTTACACTGAAGCTTTCTTT CASSLMTGSYTEAFF TRBV19*01 TRBJ1-1*01 30.0 930.0 CALSGSG??cGS*KLVF_CASSLMTGSYTEAFF 1 5338 IAPP-STN-9 IAPP 0.52 48 NEG 126 5212 3 HomoSapiens IAPP STNVGSNTY Naive T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*01:01 B2M MHCI -8652 chip0423_38683 -1.37 6.88 Chip2 T1D_6 T1D TGCATCGTCAGGGCTAACGACTACAAGCTCAGCTTT CIVRANDYKLSF TRAV26-1*01 TRAJ20*01 25.0 2369.0 TGTGCCAGCAGCCAATATCCCTATAGCAATCAGCCCCAGCATTTT CASSQYPYSNQPQHF TRBV3-1*01 TRBJ1-5*01 30.0 1518.0 CIVRANDYKLSF_CASSQYPYSNQPQHF 1 6244 G6PC2-PTH-9 IGRP 0.74 7 G6PC2-PTH-9 152 6092 4 HomoSapiens G6PC2 PTHEEHLFY Naive T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*01:01 B2M MHCI -8653 chip0423_587988 8.26 11.1 Chip2 T1D_5 T1D TGTGCCAGCAGCGTTCCCCAGACAGGGGCTGGAACCGGGGAGCTGTTTTTT CASSVPQTGAGTGELFF TRBV9*01 TRBJ2-2*01 30.0 1389.0 _CASSVPQTGAGTGELFF 1 5435 BZLF1-190-197 EBV 0.43 2156 NEG 156 5279 7 EBV BZLF1 RAKFKQLL transitional T cells between effector and memory populations PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-B*08:01 B2M MHCI -8654 chip0423_515572 6.08 10.85 Chip2 T1D_4 T1D TGCAGTGCCATCGAATTCCGGGACCCTAATCAGCCCCAGCATTTT CSAIEFRDPNQPQHF TRBV20-1*01 TRBJ1-5*01 31.0 1491.0 _CSAIEFRDPNQPQHF 3 7498 EBV-LMP1-1 EBV 0.84 237 EBV-LMP1-1 134 7364 6 EBV LMP1 YLLEMLWRL central memory T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*02:01 B2M MHCI -8655 chip0423_265896 12.6 6.65 Chip2 T1D_6 T1D TGTGCCAGCAGCTTGGGACAGGCCTACGAGCAGTACTTC CASSLGQAYEQYF TRBV7-8*01 TRBJ2-7*01 4.0 274.0 _CASSLGQAYEQYF 175 4056 EBNA3A-193-201 EBV 0.91 1022 EBNA3A-193-201 157 3899 10 EBV EBNA3A FLRGRAYGL effector memory T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-B*08:01 B2M MHCI -8656 chip0423_605880 12.05 10.38 Chip2 T1D_4 T1D TGCATCGTCATAGTCGGGTGTACGGCACTGCCAGTATACTAACCTTT CIVIVGCac?GTASILTF TRAV26-1*01 TRAJ44*01 38.0 2027.0 TGTGCCAGCAGCTTAGCGGTCGGAGAAGGGCCCCAGCATTTT CASSLAVGEGPQHF TRBV7-9*01 TRBJ1-5*01 29.0 1259.0 CIVIVGCac?GTASILTF_CASSLAVGEGPQHF 1 5217 BZLF1-190-197 EBV 0.76 2156 BZLF1-190-197 163 5054 9 EBV BZLF1 RAKFKQLL effector memory T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-B*08:01 B2M MHCI -8657 chip0423_857911 -1.89 9.59 Chip2 T1D_6 T1D TGTGCCGTGGCGGCGATCACGGGGGGAGGAAACAAGCTCCCCTTT CAVAAITGGGNKLPF TRAV12-2*01 TRAJ10*01 51.0 1934.0 TGTGCCAGCAGTATGGGGGGGGGCCACGAGCAGTACTCC CASSMGGGHEQYS TRBV27*01 TRBJ2-7*01 3.0 235.0 CAVAAITGGGNKLPF_CASSMGGGHEQYS 1 7432 IAPP-LNH-9 IAPP 0.88 15 IAPP-LNH-9 129 7303 3 HomoSapiens IAPP LNHLKATPI Naive T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-B*08:01 B2M MHCI -8658 chip0423_392535 8.22 10.69 Chip2 T1D_4 T1D TGTGCCAGCAGCCAAGTCAACAACCCGGGGGATGGCTACACCTTC CASSQVNNPGDGYTF TRBV14*01 TRBJ1-2*01 13.0 406.0 _CASSQVNNPGDGYTF 94 9484 EBNA3A-158-166 EBV 0.55 444 NEG 155 9329 8 EBV EBNA3A QAKWRLQTL effector memory T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-B*08:01 B2M MHCI -8659 chip0423_384669 11.37 6.8 Chip2 T1D_5 T1D TGTGCAGCAGAGGAAACCTCCTACGACAAGGTGATATTT CAAEETSYDKVIF TRAV13-1*01 TRAJ50*01 1.0 142.0 TGTGCTGGGCCGGATGGCTCCAGCAACACAGGCAAACTAATCTTT CAGPDGSSNTGKLIF TRAV35*01 TRAJ37*01 1.0 23.0 0.5 TGTGCCAGCAGTTTTACGGGGAGCCCCTCTGGGGCCAACGTCCTGACTTTC CASSFTGSPSGANVLTF TRBV12-3*01,TRBV12-4*01 TRBJ2-6*01 5.0 257.0 CAAEETSYDKVIF_CASSFTGSPSGANVLTF 1 6640 BZLF1-190-197 EBV 0.46 2156 NEG 163 6477 10 EBV BZLF1 RAKFKQLL effector memory T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-B*08:01 B2M MHCI -8660 chip0423_555816 -2.13 9.49 Chip2 T1D_5 T1D TGTGCTGTGAGAGACTATGGTCAGAATTTTGTCTTT CAVRDYGQNFVF TRAV3*01 TRAJ26*01 23.0 2230.0 TGTGCCTGGCGTGTTGGTACTAGGGGGTACGAGCAGTACTTC CAWRVGTRGYEQYF TRBV30*01 TRBJ2-7*01 41.0 2077.0 CAVRDYGQNFVF_CAWRVGTRGYEQYF 1 6146 GAD2-MMI-8 GAD65 0.5 40 NEG 149 5997 3 HomoSapiens GAD2 MMIARFKM Naive T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-B*08:01 B2M MHCI -8661 chip0423_476990 -2.45 9.4 Chip2 T1D_6 T1D TGTGCCAGTAGGGATCTGGACTTCAACTATGGCTACACCTTC CASRDLDFNYGYTF TRBV19*01 TRBJ1-2*01 103.0 5001.0 _CASRDLDFNYGYTF 1 7025 MART1-A27L MART1 0.42 16 MART1-A27L 151 6874 3 HomoSapiens MART1 ELAGIGILTV Naive T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*02:01 B2M MHCI -8662 chip0423_238056 -2.51 10.09 Chip2 T1D_5 T1D TGTGCTGTGGGGTCCTATAACCAGGGAGGAAAGCTTATCTTC CAVGSYNQGGKLIF TRAV8-3*01 TRAJ23*01 5.0 220.0 CAVGSYNQGGKLIF_ 1 5742 EBNA3A-158-166 EBV 0.71 444 EBNA3A-158-166 138 5604 3 EBV EBNA3A QAKWRLQTL Naive T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-B*08:01 B2M MHCI -8663 chip0423_640670 9.0 9.22 Chip2 T1D_5 T1D TGTGCCAGCAGCTCAGCTTCGAACACTGAAGCTTTCTTT CASSSASNTEAFF TRAV36/DV7*01 TRAJ40*01 3.0 7.0 TGTGCCAGCAGCTCAGCTTCGAACACTGAAGCTTTCTTT CASSSASNTEAFF TRBV7-9*01 TRBJ1-1*01 88.0 3751.0 CASSSASNTEAFF_CASSSASNTEAFF 1 4199 BZLF1-190-197 EBV 0.5 2156 NEG 152 4047 8 EBV BZLF1 RAKFKQLL effector memory T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-B*08:01 B2M MHCI -8664 chip0423_200600 9.13 8.27 Chip2 T1D_5 T1D TGTGCAGCAAGTGAAACCTCCTACGACAAGGTGATATTT CAASETSYDKVIF TRAV13-1*01 TRAJ50*01 23.0 2019.0 TGTGCCAGCAGCTTACTAGGAAACAATAATTCACCCCCCCACTTT CASSLLGNNNSPPHF TRBV7-9*01 TRBJ1-6*01 10.0 231.0 CAASETSYDKVIF_CASSLLGNNNSPPHF 1 6548 BZLF1-190-197 EBV 0.92 2156 NEG 158 6390 8 EBV BZLF1 RAKFKQLL effector memory T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-B*08:01 B2M MHCI -8665 chip0423_762831 8.65 12.38 Chip2 T1D_4 T1D TGTGCAGCAAGCGACCGCCTTCCAGGAGGAAGCTACATACCTACATTT CAASDRLPGGSYIPTF TRAV13-1*01 TRAJ6*01 3.0 61.0 TGCAGTGCTACTAACCAGTACGACGGACCCGACACTGAAGCTTTCTTT CSATNQYDGPDTEAFF TRBV20-1*01 TRBJ1-1*01 22.0 1277.0 CAASDRLPGGSYIPTF_CSATNQYDGPDTEAFF 21 3842 BZLF1-190-197 EBV 0.7 2156 NEG 146 3696 7 EBV BZLF1 RAKFKQLL transitional T cells between effector and memory populations PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-B*08:01 B2M MHCI -8666 chip0423_366367 -2.0 7.29 Chip2 healthy_3 healthy _ 6746 7063 PGT-178 PGT 0.75 1480 PGT-178 139 6924 3 HomoSapiens PGT LLAGIGTVPI Naive T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*02:01 B2M MHCI -8667 chip0423_442074 -3.65 8.16 Chip2 T1D_4 T1D TGTGCAGCAAGCATTCTAATGGTCAATGCAGGCCAATCCCCCTTG CAASILMVNAGQSPL TRAV23/DV6*01 TRAJ27*01 17.0 1172.0 TGTGCCAGTAGGGGGACAACCTACAATGAGCAGTTCTTC CASRGTTYNEQFF TRBV19*01 TRBJ2-1*01 62.0 3563.0 CAASILMVNAGQSPL_CASRGTTYNEQFF 1 6701 PGT-178 PGT 0.45 1480 NEG 124 6577 2 HomoSapiens PGT LLAGIGTVPI Naive T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*02:01 B2M MHCI -8668 chip0423_297670 11.63 8.11 Chip2 T1D_4 T1D TGTGCTGTGAGTGATGGAGAAGGAGCCCAGAAGCTGGTATTT CAVSDGEGAQKLVF TRAV8-6*01 TRAJ54*01 13.0 714.0 TGTGCCAGCAGCTTAACGGTTCTGGCAGGTCCAAACACTGAAGCTTTCTTT CASSLTVLAGPNTEAFF TRBV7-3*01 TRBJ1-1*01 20.0 798.0 CAVSDGEGAQKLVF_CASSLTVLAGPNTEAFF 44 4627 BZLF1-190-197 EBV 0.89 2156 BZLF1-190-197 157 4470 10 EBV BZLF1 RAKFKQLL effector memory T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-B*08:01 B2M MHCI -8669 chip0423_883620 14.06 9.46 Chip2 T1D_5 T1D TGTGCAATGAGAGAGGGCGAAAGCAGTGCTTCCAAGATAATCTTT CAMREGESSASKIIF TRAV14/DV4*01 TRAJ3*01 40.0 1359.0 TGCAGCGGGGGGGAGGCCTATGGCTACACCTTC CSGGEAYGYTF TRBV29-1*01 TRBJ1-2*01 67.0 8277.0 CAMREGESSASKIIF_CSGGEAYGYTF 3 4525 BZLF1-190-197 EBV 1.0 2156 NEG 144 4381 12 EBV BZLF1 RAKFKQLL effector T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-B*08:01 B2M MHCI -8670 chip0423_737531 -2.93 9.18 Chip2 T1D_5 T1D CTGTGCCAGTAGTATCGGACTTCTCACTGAAGCTTTCTTT LCQ*YRac??ttLTEAFF TRBV19*01 TRBJ1-1*01 14.0 449.0 _LCQ*YRac??ttLTEAFF 1 6335 GAD2-FSL-9 GAD65 0.54 3 NEG 125 6210 2 HomoSapiens GAD2 FSLKKGAAA Naive T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-B*08:01 B2M MHCI -8671 chip0423_338331 -3.41 10.21 Chip2 T1D_6 T1D TGTGCCAGCAGCGCGGCCAGGGGTCGTGAAGCTTTCTTT CASSAARGREAFF TRBV13*01 TRBJ1-1*01 10.0 603.0 _CASSAARGREAFF 1 5565 GP160-311-320 HIV 0.42 109 NEG 114 5451 2 HIV-1 GP160 RGPGRAFVTI Naive T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*02:01 B2M MHCI -8672 chip0423_38537 10.89 10.71 Chip2 T1D_5 T1D TGTGCCAGCAGCCCTCTTGGGAGCAATGAAAAACTGTTTTTT CASSPLGSNEKLFF TRBV7-9*01 TRBJ1-4*01 15.0 467.0 _CASSPLGSNEKLFF 20 4702 BZLF1-190-197 EBV 1.0 2156 NEG 179 4523 9 EBV BZLF1 RAKFKQLL effector memory T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-B*08:01 B2M MHCI -8673 chip0423_146472 -4.07 8.44 Chip2 T1D_4 T1D TGTGCCGTGAACAATGCCAGACTCATGTTT CAVNNARLMF TRAV12-2*01 TRAJ31*01 4.0 414.0 TGTGCCAGCAGCCTGACTAGCGTTAGCACAGATACGCAGTATTTT CASSLTSVSTDTQYF TRBV28*01 TRBJ2-3*01 17.0 312.0 CAVNNARLMF_CASSLTSVSTDTQYF 1 8075 MART1-ALA MART1 0.53 269 NEG 142 7933 2 HomoSapiens MART1 ALAGIGILTV Naive T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*02:01 B2M MHCI -8674 chip0423_794911 10.68 8.08 Chip2 T1D_4 T1D CCTGCAGTGAGTGATGGCGAGGGAGCCCAGCCGCTGGTAGTT PAVSDGEGAQPLVV TRAV8-6*01 TRAJ54*01 10.0 798.0 TGTGCCAGCAGCTTAACGGTTCTGGCAGGTCCAAACACTGAAGCTTTCTTT CASSLTVLAGPNTEAFF TRBV7-3*01 TRBJ1-1*01 14.0 380.0 PAVSDGEGAQPLVV_CASSLTVLAGPNTEAFF 1 4147 BZLF1-190-197 EBV 1.0 2156 BZLF1-190-197 140 4007 10 EBV BZLF1 RAKFKQLL effector memory T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-B*08:01 B2M MHCI -8675 chip0423_852823 -1.84 9.57 Chip2 T1D_5 T1D TGTGCCGTTGGTACTGGAGGCTTCAAAACTATCTTT CAVGTGGFKTIF TRAV16*01 TRAJ9*01 12.0 1402.0 CAVGTGGFKTIF_ 1 7421 INS-MAL-8 INS 0.51 38 INS-MAL-8 151 7270 3 HomoSapiens INS MALWMRLL Naive T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-B*08:01 B2M MHCI -8676 chip0423_505090 11.43 7.17 Chip2 T1D_5 T1D TGTGCAGCAAGTGAGACCTCCTACGACAAGGTGATATTT CAASETSYDKVIF TRAV13-1*01 TRAJ50*01 47.0 3565.0 TGTGCCAGCAGCTTACCCACCTTCTACGAGCAGTACTTC CASSLPTFYEQYF TRBV7-2*01 TRBJ2-7*01 41.0 2657.0 CAASETSYDKVIF_CASSLPTFYEQYF 1 4024 BZLF1-190-197 EBV 0.8 2156 NEG 174 3850 10 EBV BZLF1 RAKFKQLL effector memory T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-B*08:01 B2M MHCI -8677 chip0423_100889 -1.57 11.37 Chip2 T1D_6 T1D TGTGCCAGCAGGTCAAAGAGAGGGGTCGGGGACACCATATATTTT CASRSKRGVGDTIYF TRBV12-3*01,TRBV12-4*01 TRBJ1-3*01 14.0 351.0 _CASRSKRGVGDTIYF 1 4527 PGT-178 PGT 0.88 1480 PGT-178 135 4392 3 HomoSapiens PGT LLAGIGTVPI Naive T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*02:01 B2M MHCI -8678 chip0423_525823 -0.6 4.78 Chip2 healthy_4 healthy TGTGCAATGACCGGGGGTTACCAGAAAGTTACCTTT CAMTGGYQKVTF TRAV12-3*01 TRAJ13*01 1.0 37.0 TGTGCCAGCAGCTCCCCGATCAACTCTGGAAACACCATATATTTT CASSSPINSGNTIYF TRBV14*01 TRBJ1-3*01 22.0 689.0 CAMTGGYQKVTF_CASSSPINSGNTIYF 1 6886 PGT-178 PGT 0.67 1480 PGT-178 128 6758 5 HomoSapiens PGT LLAGIGTVPI natural killer-like T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*02:01 B2M MHCI -8679 chip0423_108985 -2.92 10.73 Chip2 T1D_6 T1D TGTGCTCTGAGTGAGGCCCAGGCAGGAACTGCTCTGATCTTT CALSEAQAGTALIF TRAV19*01 TRAJ15*01 8.0 385.0 TGCAGCGTAAAGGACACGAAGACCTACGAGCAGTACTTC CSVKDTKTYEQYF TRBV29-1*01 TRBJ2-7*01 20.0 572.0 CALSEAQAGTALIF_CSVKDTKTYEQYF 1 3346 IGRP-265-273 IGRP 1.0 34 IGRP-265-273 140 3206 3 HomoSapiens IGRP VLFGLGFAI Naive T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*02:01 B2M MHCI -8680 chip0423_826938 11.82 12.32 Chip2 T1D_4 T1D TGTGCTGTGAGTGATGGAGAAGGAGCCCAGAAGCTGGTATTT CAVSDGEGAQKLVF TRAV8-6*01 TRAJ54*01 1.0 40.0 CAVSDGEGAQKLVF_ 12 3368 BZLF1-190-197 EBV 0.81 2156 BZLF1-190-197 146 3222 11 EBV BZLF1 RAKFKQLL effector T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-B*08:01 B2M MHCI -8681 chip0423_282183 -2.75 10.26 Chip2 T1D_6 T1D TGTGCCAGCAGTTTCCAGGAAGGGGACACTGAAGCTTTCTTT CASSFQEGDTEAFF TRBV6-2*01,TRBV6-3*01 TRBJ1-1*01 5.0 203.0 _CASSFQEGDTEAFF 1 5210 GAD2-VSA-10 GAD65 0.54 21 GAD2-VSA-10 144 5066 4 HomoSapiens GAD2 VSATAGTTVY Naive T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*01:01 B2M MHCI -8682 chip0423_167215 -2.3 10.79 Chip2 T1D_6 T1D TGCCTTCTGGGAGGAAACGGCCGGAGGGACCGGCACTGCCAGTAAACTCACCTTT CLLGGNGRR??gTGTASKLTF TRAV40*01 TRAJ44*01 46.0 1345.0 TGTGCCAGCAGTGAAGATGTGGGGAACCAAGAGACCCAGTACTTC CASSEDVGNQETQYF TRBV2*01 TRBJ2-5*01 22.0 883.0 CLLGGNGRR??gTGTASKLTF_CASSEDVGNQETQYF 1 5816 GAD2-VSA-10 GAD65 0.84 21 GAD2-VSA-10 140 5676 3 HomoSapiens GAD2 VSATAGTTVY Naive T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*01:01 B2M MHCI -8683 chip0423_37735 -1.65 8.54 Chip2 T1D_6 T1D TGTGCCGTGAGCGGCAGAGATGACAAGATCATCTTT CAVSGRDDKIIF TRAV12-2*01 TRAJ30*01 39.0 2973.0 TGTGCCACCCAGAGCGGGGCACTCACCGGGGAGCTGTTTTTT CATQSGALTGELFF TRBV6-1*01 TRBJ2-2*01 36.0 2019.0 CAVSGRDDKIIF_CATQSGALTGELFF 1 6843 MART1-ALA MART1 0.43 269 NEG 128 6715 3 HomoSapiens MART1 ALAGIGILTV Naive T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*02:01 B2M MHCI -8684 chip0423_588321 -3.29 8.24 Chip2 healthy_3 healthy _ 6746 7873 PTPRN-805-813 PTPRN 0.73 11 NEG 147 7726 2 HomoSapiens PTPRN VIVMLTPLV Naive T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*02:01 B2M MHCI -8685 chip0423_523843 -4.56 10.17 Chip2 healthy_3 healthy TGTGCTCTGATTTCCTATGCAGGCAAATCAACCTTT CALISYAGKSTF TRAV19*01 TRAJ27*01 1.0 32.0 TGTGCCAGTAGTATAATGGGGGACACTGAAGCTTTCTTT CASSIMGDTEAFF TRBV19*01 TRBJ1-1*01 3.0 47.0 CALISYAGKSTF_CASSIMGDTEAFF 1 7560 IAPP-STN-9 IAPP 0.82 48 IAPP-STN-9 133 7427 2 HomoSapiens IAPP STNVGSNTY Naive T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*01:01 B2M MHCI -8686 chip0423_742263 9.69 10.24 Chip2 T1D_4 T1D TGCATCGTCAGAGTCGCGGGGGACAGCTGGGGGCAATTGCAGTTT CIVRVAGDSWGQLQF TRAV26-1*01 TRAJ24*01 35.0 2129.0 TGTGCCAGCAGCTCCTTGGGGGAGGACAATCAGCCCCAGCATTTT CASSSLGEDNQPQHF TRBV27*01 TRBJ1-5*01 18.0 853.0 CIVRVAGDSWGQLQF_CASSSLGEDNQPQHF 1 5994 BZLF1-190-197 EBV 0.5 2156 NEG 144 5850 9 EBV BZLF1 RAKFKQLL effector memory T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-B*08:01 B2M MHCI -8687 chip0423_372837 11.71 8.39 Chip2 T1D_4 T1D TGTGCTGTGAGTGATGGAGAAGGAGCCCAGAAGCTGGTATTT CAVSDGEGAQKLVF TRAV8-6*01 TRAJ54*01 45.0 2056.0 TGTGCCAGCAGCTTAACGGTTCTGGCAGGTCCAAACACTGAAGCTTTCTTT CASSLTVLAGPNTEAFF TRBV7-3*01 TRBJ1-1*01 35.0 1115.0 CAVSDGEGAQKLVF_CASSLTVLAGPNTEAFF 44 5225 BZLF1-190-197 EBV 0.74 2156 BZLF1-190-197 145 5080 10 EBV BZLF1 RAKFKQLL effector memory T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-B*08:01 B2M MHCI -8688 chip0423_99554 5.71 11.5 Chip2 T1D_5 T1D TGTGCCAGCAGCTTACGTAATAACTATGGCTACACCTTC CASSLRNNYGYTF TRBV11-3*01 TRBJ1-2*01 2.0 54.0 _CASSLRNNYGYTF 1 5965 ZNT8-YAK-9 ZNT8 0.53 59 NEG 144 5821 7 HomoSapiens ZNT8 YAKWKLCSA transitional T cells between effector and memory populations PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-B*08:01 B2M MHCI -8689 chip0423_702134 6.04 10.03 Chip2 T1D_4 T1D TGTGCTACGGGAGGGGGTCCTGGTGTCGGCCCCGGCACCTTC CATGGGPGVGPGTF TRAV17*01 TRAJ11*01 23.0 1011.0 TGTGCCAGCAGCAAACAGGGTGGCGGCTATGGCTACACCTTC CASSKQGGGYGYTF TRBV6-1*01 TRBJ1-2*01 1.0 60.0 CATGGGPGVGPGTF_CASSKQGGGYGYTF 1 6140 EBV-LMP2-FLY EBV 0.62 355 NEG 111 6029 6 EBV LMP2 FLYALALLL central memory T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*02:01 B2M MHCI -8690 chip0423_681022 -4.89 9.04 Chip2 healthy_3 healthy TGTGCTGCCCTTCAGGGAGCCCAGAAGCTGGTATTT CAALQGAQKLVF TRAV20*01 TRAJ54*01 17.0 2018.0 TGTGCTAGTGGTTTGGTACCAGGGAGCTCCAATGAGCAGTTCTTC CASGLVPGSSNEQFF TRBV12-5*01 TRBJ2-1*01 4.0 397.0 CAALQGAQKLVF_CASGLVPGSSNEQFF 1 6498 INS-6-16 INS 0.54 20 INS-6-16 128 6370 2 HomoSapiens INS RLLPLLALLAL Naive T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*02:01 B2M MHCI -8691 chip0423_611262 -1.34 7.19 Chip2 healthy_4 healthy TGCAGCGGGGAGTGGAACACTGAAGCTTTCTTT CSGEWNTEAFF TRBV29-1*01 TRBJ1-1*01 119.0 7724.0 _CSGEWNTEAFF 1 6038 PGT-178 PGT 0.94 1480 PGT-178 144 5894 3 HomoSapiens PGT LLAGIGTVPI Naive T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*02:01 B2M MHCI -8692 chip0423_164683 12.83 8.49 Chip2 T1D_6 T1D TGTGTGGTGAACATCGATGCCAGGCTCCTGTTT CVVNIDARLLF TRAV12-1*01 TRAJ31*01 3.0 97.0 TGTGCCAGCAGCTTGGGACAGGCCTACGAGCAGTACTTC CASSLGQAYEQYF TRBV7-8*01 TRBJ2-7*01 20.0 854.0 CVVNIDARLLF_CASSLGQAYEQYF 1 2345 EBNA3A-193-201 EBV 0.64 1022 NEG 157 2188 10 EBV EBNA3A FLRGRAYGL effector memory T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-B*08:01 B2M MHCI -8693 chip0423_61409 6.9 14.49 Chip2 T1D_6 T1D TGTGCCAGTAGTATTAGAAGCACAGATACGCAGTATTTT CASSIRSTDTQYF TRBV19*01 TRBJ2-3*01 22.0 1168.0 _CASSIRSTDTQYF 6 3348 M1 FLU 0.73 1250 NEG 138 3210 7 InfluenzaA M1 GILGFVFTL transitional T cells between effector and memory populations PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*02:01 B2M MHCI -8694 chip0423_664699 -3.04 7.78 Chip2 T1D_6 T1D TGTGTGGTGAAACCCCCAGGAACCTACAAATACATCTTT CVVKPPGTYKYIF TRAV12-1*01 TRAJ40*01 2.0 27.0 TGTGCCAGCAGGATGATGACAGGGGCTGGAAACACCATATATTTT CASRMMTGAGNTIYF TRBV2*01 TRBJ1-3*01 17.0 671.0 CVVKPPGTYKYIF_CASRMMTGAGNTIYF 1 9358 gp160-586-593 HIV 0.58 30 gp160-586-593 139 9219 2 HIV-1 gp160 YLKDQQLL Naive T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-B*08:01 B2M MHCI -8695 chip0423_173499 11.22 6.84 Chip2 healthy_3 healthy TGTGCCAGCAGCCGCCAAGGGGGCGCAGGTGGCTACACCTTC CASSRQGGAGGYTF TRBV6-1*01 TRBJ1-2*01 44.0 2309.0 _CASSRQGGAGGYTF 1 6249 EBV-LMP2-FLY EBV 0.62 355 NEG 108 6141 6 EBV LMP2 FLYALALLL central memory T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*02:01 B2M MHCI -8696 chip0423_849127 -1.01 8.18 Chip2 healthy_3 healthy TGTGCAATGAGCCTATCTAACTTTGGAAATGAGAAATTAACCTTT CAMSLSNFGNEKLTF TRAV12-3*01 TRAJ48*01 47.0 1537.0 CAMSLSNFGNEKLTF_ 16 5758 PGT-178 PGT 0.41 1480 NEG 122 5636 4 HomoSapiens PGT LLAGIGTVPI Naive T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*02:01 B2M MHCI -8697 chip0423_46675 12.14 12.48 Chip2 T1D_4 T1D TGTGCTGTGCGTGATGGAGCAGGCGCCCAGCAGCTGGTCTTT CAVRDGAGAQQLVF TRAV8-6*01 TRAJ54*01 35.0 1551.0 TGTGCCAGCAGCTTAACGGTTCTGGCAGGTCCAAACACTGAAGCTTTCTTT CASSLTVLAGPNTEAFF TRBV7-3*01 TRBJ1-1*01 28.0 758.0 CAVRDGAGAQQLVF_CASSLTVLAGPNTEAFF 1 3629 BZLF1-190-197 EBV 0.82 2156 NEG 157 3472 11 EBV BZLF1 RAKFKQLL effector T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-B*08:01 B2M MHCI -8698 chip0423_18214 14.25 13.39 Chip2 healthy_3 healthy TGTGCCAGTAGTCGATATTCCGTAGATACGCAGTATTTT CASSRYSVDTQYF TRBV19*01 TRBJ2-3*01 20.0 966.0 _CASSRYSVDTQYF 4 1444 M1 FLU 0.54 1250 NEG 158 1286 12 InfluenzaA M1 GILGFVFTL effector T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*02:01 B2M MHCI -8699 chip0423_837689 5.14 10.81 Chip2 healthy_3 healthy TGTGCCAGCAGCGAGGGCCACAGCACCATATATTTT CASSEGHSTIYF TRBV9*01 TRBJ1-3*01 5.0 143.0 _CASSEGHSTIYF 1 5582 NP140-148 FLU 0.85 102 NP140-148 150 5432 6 InfluenzaA NP HSNLNDATY central memory T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*01:01 B2M MHCI -8700 chip0423_32544 -0.42 8.35 Chip2 healthy_4 healthy TGTGCCAGCAGCCTGGAAAATGAAAAACTGTTTTTT CASSLENEKLFF TRBV14*01 TRBJ1-4*01 12.0 367.0 _CASSLENEKLFF 1 8671 PGT-178 PGT 0.71 1480 PGT-178 129 8542 4 HomoSapiens PGT LLAGIGTVPI Naive T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*02:01 B2M MHCI -8701 chip0423_628887 9.22 9.9 Chip2 T1D_5 T1D TGTGCAATGAGAGAGGGCGAAGCTGGAGGCTTCAAAACTATCTTT CAMREGEAGGFKTIF TRAV14/DV4*01 TRAJ9*01 13.0 344.0 TGTGCCAGCAGCTCCATGACAGGGAGCTCCTACGAGCAGTACTTC CASSSMTGSSYEQYF TRBV7-9*01 TRBJ2-7*01 74.0 3479.0 CAMREGEAGGFKTIF_CASSSMTGSSYEQYF 1 5542 BZLF1-190-197 EBV 0.53 2156 BZLF1-190-197 160 5382 8 EBV BZLF1 RAKFKQLL effector memory T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-B*08:01 B2M MHCI -8702 chip0423_359171 -1.98 12.17 Chip2 T1D_6 T1D TGCAGTGTAGGCGGGGGGCGTAACGTCGCAACTAATGAAAAACTGTTTTTT CSVGGGRNVATNEKLFF TRBV20-1*01 TRBJ1-4*01 13.0 316.0 _CSVGGGRNVATNEKLFF 1 4355 PGT-178 PGT 0.71 1480 PGT-178 160 4195 1 HomoSapiens PGT LLAGIGTVPI Naive T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*02:01 B2M MHCI -8703 chip0423_278470 11.82 8.17 Chip2 T1D_4 T1D TGCATCGTCAGAGTCGTGTGTACGGCACTGCCAGTAAACTCACCTCT CIVRVVCac?GTASKLTS TRAV26-1*01 TRAJ44*01 48.0 2022.0 CIVRVVCac?GTASKLTS_ 1 4203 BZLF1-190-197 EBV 1.0 2156 BZLF1-190-197 165 4038 10 EBV BZLF1 RAKFKQLL effector memory T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-B*08:01 B2M MHCI -8704 chip0423_303626 -3.05 13.77 Chip2 T1D_4 T1D TGTGCAGCGCTTATATCTAACTTTGGAAATGAGAAATTAACCTTT CAALISNFGNEKLTF TRAV12-3*01 TRAJ48*01 77.0 3673.0 TGTGCCAGTAGTACAACAGGGTCTGGAAACACCATATATTTT CASSTTGSGNTIYF TRBV19*01 TRBJ1-3*01 9.0 262.0 CAALISNFGNEKLTF_CASSTTGSGNTIYF 1 3860 PGT-178 PGT 0.52 1480 NEG 120 3740 1 HomoSapiens PGT LLAGIGTVPI Naive T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*02:01 B2M MHCI -8705 chip0423_185946 12.23 9.27 Chip2 healthy_4 healthy TGTGCCAGCAGCTCCGGACAGGCCTACGAGCAGTACTTC CASSSGQAYEQYF TRBV7-8*01 TRBJ2-7*01 25.0 1250.0 _CASSSGQAYEQYF 49 3691 EBNA3A-193-201 EBV 1.0 1022 EBNA3A-193-201 147 3544 10 EBV EBNA3A FLRGRAYGL effector memory T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-B*08:01 B2M MHCI -8706 chip0423_863474 12.3 9.53 Chip2 T1D_6 T1D TGCATCCTCCCACTTGCTGGTGGTACTAGCTATGGAAAGCTGACATTT CILPLAGGTSYGKLTF TRAV26-2*01 TRAJ52*01 19.0 1243.0 TGTGCCAGCAGCTTGGGACAGGCCTACGAGCAGTACTTC CASSLGQAYEQYF TRBV7-8*01 TRBJ2-7*01 4.0 279.0 CILPLAGGTSYGKLTF_CASSLGQAYEQYF 308 5648 EBNA3A-193-201 EBV 0.68 1022 EBNA3A-193-201 145 5503 10 EBV EBNA3A FLRGRAYGL effector memory T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-B*08:01 B2M MHCI -8707 chip0423_716670 -1.56 10.3 Chip2 T1D_6 T1D TGTGCAATTTGTATATCTAACTTTGGAAATGAGAAATTAACCTTT CAICISNFGNEKLTF TRAV12-3*01 TRAJ48*01 46.0 1536.0 TGTGCCAGCGCCTCCGGGGTGGGGTCGGCCACTGAAGCTTTCTTT CASASGVGSATEAFF TRBV6-1*01 TRBJ1-1*01 10.0 448.0 CAICISNFGNEKLTF_CASASGVGSATEAFF 1 5579 PGT-178 PGT 0.67 1480 NEG 139 5440 3 HomoSapiens PGT LLAGIGTVPI Naive T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*02:01 B2M MHCI -8708 chip0423_386606 11.95 10.48 Chip2 T1D_4 T1D TGCATCGTCAGAGAGGGAGGAGGTGCTGACGGACTCCCCTTT CIVREGGGADGLPF TRAV26-1*01 TRAJ45*01 31.0 1949.0 TGTGCCAGCAGCTTAGCGGTCGGAGAAGGGCCCCAGCATTTT CASSLAVGEGPQHF TRBV7-9*01 TRBJ1-5*01 24.0 1147.0 CIVREGGGADGLPF_CASSLAVGEGPQHF 21 4668 BZLF1-190-197 EBV 0.88 2156 BZLF1-190-197 144 4524 9 EBV BZLF1 RAKFKQLL effector memory T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-B*08:01 B2M MHCI -8709 chip0423_257061 -2.24 12.65 Chip2 T1D_6 T1D TGTGTCCCTAGGTGGCTCGCGGGGGGAGGGCACAAACTCACCTTT CVPRWLAGGGHKLTF TRAV40*01 TRAJ10*01 24.0 547.0 TGTGCCAGCAGCGGACAGGGGGCCGAAGCTTTCTTT CASSGQGAEAFF TRBV7-9*01 TRBJ1-1*01 44.0 1723.0 CVPRWLAGGGHKLTF_CASSGQGAEAFF 1 5087 ZNT8-YAK-9 ZNT8 0.42 59 NEG 160 4927 1 HomoSapiens ZNT8 YAKWKLCSA Naive T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-B*08:01 B2M MHCI -8710 chip0423_239144 11.02 7.05 Chip2 T1D_4 T1D TGTGCCAGCAGCCAAGTCAACAACCCGGGGGATGGCTACACCTTC CASSQVNNPGDGYTF TRBV14*01 TRBJ1-2*01 7.0 161.0 _CASSQVNNPGDGYTF 94 4411 EBNA3A-158-166 EBV 0.59 444 NEG 167 4244 10 EBV EBNA3A QAKWRLQTL effector memory T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-B*08:01 B2M MHCI -8711 chip0423_867801 12.63 11.09 Chip2 T1D_5 T1D TGTGCCAGCCAACTAGCGGGAGGCACCGGGGAGCTGTTTTTT CASQLAGGTGELFF TRBV24-1*01 TRBJ2-2*01 34.0 2025.0 _CASQLAGGTGELFF 69 1946 BZLF1-190-197 EBV 0.8 2156 NEG 136 1810 9 EBV BZLF1 RAKFKQLL effector memory T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-B*08:01 B2M MHCI -8712 chip0423_466602 -4.01 12.49 Chip2 T1D_6 T1D TGTGCAATGAGAGACCCCCCGGACACAGGCTTTCAGAAACTTGTATTT CAMRDPPDTGFQKLVF TRAV14/DV4*01 TRAJ8*01 92.0 1837.0 TGCAGCGTTGTCTCGGCAAGACTGAACACTGAAGCTTTCTTT CSVVSARLNTEAFF TRBV29-1*01 TRBJ1-1*01 15.0 381.0 CAMRDPPDTGFQKLVF_CSVVSARLNTEAFF 1 4092 EBV-LMP2A EBV 0.5 700 NEG 114 3978 1 EBV LMP2A CLGGLLTMV Naive T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*02:01 B2M MHCI -8713 chip0423_681771 9.81 9.25 Chip2 T1D_4 T1D TGTGCCAGCAGCCAAGTCAACAACCCGGGGGATGGCTACACCTTC CASSQVNNPGDGYTF TRBV14*01 TRBJ1-2*01 4.0 111.0 _CASSQVNNPGDGYTF 94 5201 EBNA3A-158-166 EBV 0.5 444 NEG 157 5044 8 EBV EBNA3A QAKWRLQTL effector memory T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-B*08:01 B2M MHCI -8714 chip0423_749950 11.12 10.04 Chip2 T1D_4 T1D _ 6746 3432 BZLF1-190-197 EBV 0.78 2156 BZLF1-190-197 143 3289 9 EBV BZLF1 RAKFKQLL effector memory T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-B*08:01 B2M MHCI -8715 chip0423_528202 -2.49 8.9 Chip2 T1D_6 T1D TGTGCAGCAAGTGACACCGGTAACCAGTTCTATTTT CAASDTGNQFYF TRAV29/DV5*01 TRAJ49*01 24.0 2522.0 TGTGCCAGCAGTTTGGGACTAACCTGGGGCACTGAAGCTTTCTTT CASSLGLTWGTEAFF TRBV12-3*01,TRBV12-4*01 TRBJ1-1*01 11.0 571.0 CAASDTGNQFYF_CASSLGLTWGTEAFF 1 6312 GP160-311-320 HIV 0.5 109 NEG 125 6187 3 HIV-1 GP160 RGPGRAFVTI Naive T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*02:01 B2M MHCI -8716 chip0423_868513 -3.83 9.46 Chip2 T1D_4 T1D TGTGCCAGCAGCTACTTTCTGGACTTTTCCTTC CASSYFLDFSF TRBV5-6*01 TRBJ2-5*01 17.0 1464.0 _CASSYFLDFSF 1 5427 Gag260-267 HIV 0.85 10 NEG 125 5302 2 HIV-1 Gag EIYKRWII Naive T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-B*08:01 B2M MHCI -8717 chip0423_185602 -1.58 6.86 Chip2 T1D_4 T1D TGTGCTGTGGGTGCCATCTCTAACTTTGGAAATGAGAAATTAACCTTT CAVGAISNFGNEKLTF TRAV8-3*01 TRAJ48*01 122.0 4056.0 CAVGAISNFGNEKLTF_ 1 7286 GAD65-114-122 GAD65 0.41 63 NEG 123 7163 3 HomoSapiens GAD65 VMNILLQYV Naive T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*02:01 B2M MHCI -8718 chip0423_25248 4.85 9.97 Chip2 T1D_4 T1D TGTGCTCCGACGGGCTCCTCAGGCTACAGCCCCCTCACCTTT CAPTGSSGYSPLTF TRAV17*01 TRAJ11*01 39.0 1596.0 TGTGCCAGCAGCCTCCAGGGCGGGCACATTCAGTACTTC CASSLQGGHIQYF TRBV6-1*01 TRBJ2-4*01 4.0 78.0 CAPTGSSGYSPLTF_CASSLQGGHIQYF 1 5418 EBV-LMP2-FLY EBV 0.78 355 NEG 153 5265 6 EBV LMP2 FLYALALLL central memory T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*02:01 B2M MHCI -8719 chip0423_870766 12.12 7.22 Chip2 T1D_6 T1D _ 6746 4321 LMP2A-CPL EBV 0.74 44 LMP2A-CPL 176 4145 10 EBV LMP2A CPLSKILL effector memory T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-B*08:01 B2M MHCI -8720 chip0423_503518 13.25 10.73 Chip2 T1D_5 T1D TGTGCCAGCAGCTTCACTAGCGGGACAGATCCTGAGCTGTTTTTT CASSFTSGTDPELFF TRBV7-9*01 TRBJ2-2*01 43.0 2190.0 _CASSFTSGTDPELFF 17 4014 BZLF1-190-197 EBV 1.0 2156 NEG 134 3880 9 EBV BZLF1 RAKFKQLL effector memory T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-B*08:01 B2M MHCI -8721 chip0423_326958 -1.94 12.6 Chip2 T1D_4 T1D TGTGCAATGACCCTATCTAACTTTGGAAATGAGAAATTAACCTTT CAMTLSNFGNEKLTF TRAV12-3*01 TRAJ48*01 33.0 1011.0 TGTGCCAGCAGCTTTTCGACTAGCGGGAGGAATGAGCAGTTCTTC CASSFSTSGRNEQFF TRBV11-1*01 TRBJ2-1*01 50.0 2219.0 CAMTLSNFGNEKLTF_CASSFSTSGRNEQFF 1 3953 PGT-178 PGT 0.78 1480 PGT-178 145 3808 1 HomoSapiens PGT LLAGIGTVPI Naive T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*02:01 B2M MHCI -8722 chip0423_680394 8.71 10.26 Chip2 T1D_5 T1D TGTGCAGCGGCGGAAACCTCCTACGACAAGGTGATATTT CAAAETSYDKVIF TRAV13-1*01 TRAJ50*01 5.0 633.0 TGTGCCAGCCAACTAGCGGGAGGCACCGGGGAGCTGTTTTTT CASQLAGGTGELFF TRBV24-1*01 TRBJ2-2*01 20.0 1067.0 CAAAETSYDKVIF_CASQLAGGTGELFF 131 4683 BZLF1-190-197 EBV 1.0 2156 NEG 130 4553 8 EBV BZLF1 RAKFKQLL effector memory T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-B*08:01 B2M MHCI -8723 chip0423_532961 -1.72 7.06 Chip2 T1D_6 T1D TGTGCAATGAGAGAGGGACGGGGCTACAACTTCAACAAATTTTACTTT CAMREGRGYNFNKFYF TRAV14/DV4*01 TRAJ21*01 72.0 1709.0 TGTGCTAGTGGTCCGCAAGGTAGGGCAGAAAACACTGAAGCTTTCTTT CASGPQGRAENTEAFF TRBV12-5*01 TRBJ1-1*01 40.0 1554.0 CAMREGRGYNFNKFYF_CASGPQGRAENTEAFF 1 7303 LMP2A-CPL EBV 0.56 44 NEG 150 7153 3 EBV LMP2A CPLSKILL Naive T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-B*08:01 B2M MHCI -8724 chip0423_855799 7.9 8.97 Chip2 T1D_5 T1D TGTGCAGCGGCGGAAACCTCCTACGACAAGGTGATATTT CAAAETSYDKVIF TRAV13-1*01 TRAJ50*01 1.0 11.0 TGTGCCAGCCAACTAGCGGGAGGCACCGGGGAGCTGTTTTCT CASQLAGGTGELFS TRBV24-1*01 TRBJ2-2*01 3.0 240.0 CAAAETSYDKVIF_CASQLAGGTGELFS 1 6562 BZLF1-190-197 EBV 0.63 2156 NEG 172 6390 8 EBV BZLF1 RAKFKQLL effector memory T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-B*08:01 B2M MHCI -8725 chip0423_313 14.93 10.59 Chip2 T1D_5 T1D TGTGCAGAGAGACATACTGGAGGCTTCAAAACTATCTTT CAERHTGGFKTIF TRAV13-2*01 TRAJ9*01 83.0 4294.0 CAERHTGGFKTIF_ 1 4024 BZLF1-190-197 EBV 0.5 2156 NEG 135 3889 12 EBV BZLF1 RAKFKQLL effector T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-B*08:01 B2M MHCI -8726 chip0423_379303 9.11 13.81 Chip2 healthy_3 healthy TGTGCAGAGGATAACCAGGGAGGAAAGCTTATCTTC CAEDNQGGKLIF TRAV5*01 TRAJ23*01 15.0 1988.0 TGTGCCAGTAGTTCACGGAGTGCCAATGAGCAGTTCTTC CASSSRSANEQFF TRBV19*01 TRBJ2-1*01 15.0 1129.0 CAEDNQGGKLIF_CASSSRSANEQFF 1 2647 M1 FLU 0.54 1250 NEG 124 2523 11 InfluenzaA M1 GILGFVFTL effector T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*02:01 B2M MHCI -8727 chip0423_361688 -1.37 7.35 Chip2 T1D_6 T1D TGTGCCAGCAGTTTAGGGGGCGGTCAGCCCCAGCATTTT CASSLGGGQPQHF TRBV28*01 TRBJ1-5*01 17.0 1119.0 _CASSLGGGQPQHF 1 10837 MART1-A28L MART1 0.46 84 NEG 136 10701 3 HomoSapiens MART1 ALGIGILTV Naive T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*02:01 B2M MHCI -8728 chip0423_98529 -2.13 9.38 Chip2 T1D_6 T1D TGTGCAATGAGCCGAGCAAACTTTGGAAATGAGAAATTAACCTTT CAMSRANFGNEKLTF TRAV12-3*01 TRAJ48*01 59.0 2056.0 TGTGCCAGCAGCTCGACTAGCGGGGGGGCTCCCGGGGAGCTGTTTTTT CASSSTSGGAPGELFF TRBV5-4*01 TRBJ2-2*01 26.0 1182.0 CAMSRANFGNEKLTF_CASSSTSGGAPGELFF 1 8315 PGT-178 PGT 0.92 1480 PGT-178 125 8190 3 HomoSapiens PGT LLAGIGTVPI Naive T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*02:01 B2M MHCI -8729 chip0423_842436 10.62 13.75 Chip2 healthy_3 healthy _ 6746 3151 M1 FLU 0.77 1250 M1 128 3023 11 InfluenzaA M1 GILGFVFTL effector T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*02:01 B2M MHCI -8730 chip0423_778030 12.85 13.37 Chip2 T1D_5 T1D TGTGCCAGCAGCTCCTTAAGCGGGGGGGCAGGAAATGAGCAGTTCTTC CASSSLSGGAGNEQFF TRBV7-9*01 TRBJ2-1*01 75.0 5267.0 _CASSSLSGGAGNEQFF 33 1446 BZLF1-190-197 EBV 0.42 2156 NEG 141 1305 11 EBV BZLF1 RAKFKQLL effector T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-B*08:01 B2M MHCI -8731 chip0423_633446 -2.73 9.53 Chip2 T1D_4 T1D TGTGCCGCGTTAAAATCTAACTTTGGAAATGAGAAATTAACCTTT CAALKSNFGNEKLTF TRAV12-2*01 TRAJ48*01 3.0 70.0 TGTGCCAGCAGTGGGGCGGGGGGTAGCACAGATACGCAGTATTTT CASSGAGGSTDTQYF TRBV2*01 TRBJ2-3*01 1.0 20.0 CAALKSNFGNEKLTF_CASSGAGGSTDTQYF 1 5758 PGT-178 PGT 0.52 1480 PGT-178 125 5633 2 HomoSapiens PGT LLAGIGTVPI Naive T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*02:01 B2M MHCI -8732 chip0423_219906 13.74 10.79 Chip2 T1D_5 T1D TGTGCCAGCAGCTTATTAGGACGATCGAACACTGAAGCTTTTCTT CASSLLGRSNTEAFL TRBV7-9*01 TRBJ1-1*01 46.0 1067.0 _CASSLLGRSNTEAFL 1 3506 BZLF1-190-197 EBV 0.86 2156 NEG 137 3369 9 EBV BZLF1 RAKFKQLL effector memory T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-B*08:01 B2M MHCI -8733 chip0423_217676 14.65 10.36 Chip2 T1D_4 T1D TGTGCTGTGAGTGATGGAGAAGGAGCCCAGAAGCTGGTATTT CAVSDGEGAQKLVF TRAV8-6*01 TRAJ54*01 61.0 2661.0 TGTGCCAGCAGCTTAACGGTTCTGGCAGGTCCAAACACTGAAGCTTTCTTT CASSLTVLAGPNTEAFF TRBV7-3*01 TRBJ1-1*01 58.0 1924.0 CAVSDGEGAQKLVF_CASSLTVLAGPNTEAFF 44 3512 BZLF1-190-197 EBV 0.92 2156 BZLF1-190-197 163 3349 12 EBV BZLF1 RAKFKQLL effector T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-B*08:01 B2M MHCI -8734 chip0423_484794 7.09 12.66 Chip2 healthy_4 healthy TGCAGCGTTGGCGCAGGGGGAACTAATGAAAAACTGTTTTTT CSVGAGGTNEKLFF TRBV29-1*01 TRBJ1-4*01 55.0 2270.0 _CSVGAGGTNEKLFF 51 3799 EBV-BLMF1 EBV 1.0 2531 NEG 141 3658 7 EBV BLMF1 GLCTLVAML transitional T cells between effector and memory populations PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*02:01 B2M MHCI -8735 chip0423_335782 4.76 10.24 Chip2 T1D_4 T1D TGCAGTGCCTCTCGTGACTCCTACGAGCAGTACTTC CSASRDSYEQYF TRBV20-1*01 TRBJ2-7*01 15.0 1540.0 _CSASRDSYEQYF 7 3558 EBV-LMP1-1 EBV 0.54 237 NEG 130 3428 6 EBV LMP1 YLLEMLWRL central memory T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*02:01 B2M MHCI -8736 chip0423_107696 9.43 9.71 Chip2 T1D_5 T1D TGTGCCAGCTCCCAGTTGGGGGGGGTTTACAATGAGCAGTTCTTC CASSQLGGVYNEQFF TRBV7-9*01 TRBJ2-1*01 31.0 1389.0 _CASSQLGGVYNEQFF 13 4306 BZLF1-190-197 EBV 0.5 2156 BZLF1-190-197 170 4136 8 EBV BZLF1 RAKFKQLL effector memory T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-B*08:01 B2M MHCI -8737 chip0423_472223 0.07 4.19 Chip2 T1D_6 T1D TGTGCCGTAACGGGAGGAGGAAACAAACTCACCTTT CAVTGGGNKLTF TRAV12-2*01 TRAJ10*01 71.0 5989.0 TGTGCCAGCAGTTTAGGCGCAGATACGCAGTATTTT CASSLGADTQYF TRBV27*01 TRBJ2-3*01 34.0 2473.0 CAVTGGGNKLTF_CASSLGADTQYF 1 7950 ZNT8-VTD-9 ZNT8 0.4 65 NEG 126 7824 5 HomoSapiens ZNT8 VTDAAHLLI natural killer-like T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*01:01 B2M MHCI -8738 chip0423_792006 14.0 8.14 Chip2 T1D_4 T1D _ 6746 2970 BZLF1-190-197 EBV 0.72 2156 BZLF1-190-197 149 2821 10 EBV BZLF1 RAKFKQLL effector memory T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-B*08:01 B2M MHCI -8739 chip0423_520689 -2.97 11.48 Chip2 T1D_6 T1D TGTGCCAGTAGTATAGTGGGAGAGACCCAGTACTTC CASSIVGETQYF TRBV19*01 TRBJ2-5*01 52.0 3541.0 _CASSIVGETQYF 1 4691 GAD65-114-122 GAD65 0.77 63 NEG 137 4554 1 HomoSapiens GAD65 VMNILLQYV Naive T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*02:01 B2M MHCI -8740 chip0423_81336 11.61 12.64 Chip2 T1D_4 T1D TGTGCCAGCAGCTTAACGGTTCTGGCCGGGCCAAACACTGAAGCTTGCTTT CASSLTVLAGPNTEACF TRBV7-3*01 TRBJ1-1*01 4.0 52.0 _CASSLTVLAGPNTEACF 1 2603 BZLF1-190-197 EBV 0.89 2156 NEG 162 2441 11 EBV BZLF1 RAKFKQLL effector T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-B*08:01 B2M MHCI -8741 chip0423_245295 11.49 6.83 Chip2 T1D_5 T1D TGTGCCAGCAGCGCTCACAGGGACGGCTACACCTTC CASSAHRDGYTF TRBV7-8*01 TRBJ1-2*01 20.0 1398.0 _CASSAHRDGYTF 1 4634 BZLF1-190-197 EBV 0.65 2156 NEG 149 4485 10 EBV BZLF1 RAKFKQLL effector memory T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-B*08:01 B2M MHCI -8742 chip0423_165062 7.96 13.79 Chip2 T1D_6 T1D _ 6746 3147 NP380-388 FLU 0.73 60 NEG 156 2991 7 InfluenzaA NP ELRSRYWAI transitional T cells between effector and memory populations PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-B*08:01 B2M MHCI -8743 chip0423_673292 7.79 8.87 Chip2 T1D_5 T1D TGTGCAGCACTGGAAACCTCCTACGACAAGGTGATATTT CAALETSYDKVIF TRAV13-1*01 TRAJ50*01 19.0 2059.0 TGTGCCAGCCAAGTTCATAATGGGGGGCGCAAAAGAAGCACCGGGGAGCTGTTTTTT CASQVHNGGRKRSTGELFF TRBV11-3*01 TRBJ2-2*01 14.0 270.0 CAALETSYDKVIF_CASQVHNGGRKRSTGELFF 1 9121 BZLF1-190-197 EBV 0.59 2156 BZLF1-190-197 142 8979 8 EBV BZLF1 RAKFKQLL effector memory T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-B*08:01 B2M MHCI -8744 chip0423_528714 8.73 8.57 Chip2 T1D_6 T1D CGCAGCGCCGGCAGGGACGGGACTAATGAAAAACTGTTTTTT RSAGRDGTNEKLFF TRBV29-1*01 TRBJ1-4*01 37.0 2237.0 _RSAGRDGTNEKLFF 2 8120 EBV-BLMF1 EBV 0.45 2531 NEG 136 7984 8 EBV BLMF1 GLCTLVAML effector memory T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*02:01 B2M MHCI -8745 chip0423_578721 5.14 10.59 Chip2 healthy_3 healthy TGTGCAATGAGCGGAGACTCTGGTTCTGCAAGGCAACTGACCTTT CAMSGDSGSARQLTF TRAV12-3*01 TRAJ22*01 66.0 2673.0 TGTGCCACCAGTGATTTGCAACTGGGAAAAAGGTACAATGAGCAGTTCTTC CATSDLQLGKRYNEQFF TRBV24-1*01 TRBJ2-1*01 14.0 517.0 CAMSGDSGSARQLTF_CATSDLQLGKRYNEQFF 1 7218 INS-GSH-9 INS 0.89 19 INS-GSH-9 124 7094 6 HomoSapiens INS GSHLVEALY central memory T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*01:01 B2M MHCI -8746 chip0423_514463 -4.54 8.3 Chip2 T1D_4 T1D TGTGCCGGCGGGGGTTCCGGGTATGCACTCAACTTC CAGGGSGYALNF TRAV12-2*01 TRAJ41*01 22.0 2074.0 TGTGCCAGCAGCCCCGGAGGAACTGAAAAACTGTTTTTT CASSPGGTEKLFF TRBV7-9*01 TRBJ1-4*01 28.0 924.0 CAGGGSGYALNF_CASSPGGTEKLFF 1 4663 PGT-178 PGT 0.42 1480 NEG 135 4528 2 HomoSapiens PGT LLAGIGTVPI Naive T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*02:01 B2M MHCI -8747 chip0423_343954 16.25 11.45 Chip2 healthy_3 healthy TGTGCCCGCCGCTTGGCGCCGCATGGCTACACCTTC CARRLAPHGYTF TRBV5-4*01 TRBJ1-2*01 8.0 66.0 _CARRLAPHGYTF 1 4026 NP44-52 FLU 0.63 474 NP44-52 134 3892 12 InfluenzaA NP CTELKLSDY effector T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*01:01 B2M MHCI -8748 chip0423_324033 -1.9 8.23 Chip2 T1D_6 T1D TGTGCCGTGAACGCCCACGGAGGTGCTGACGGACTCACCTTT CAVNAHGGADGLTF TRAV12-2*01 TRAJ45*01 90.0 5047.0 TGTGCCAGCAGTTACTCAGGACCGAACACTGAAGCTTTCTTT CASSYSGPNTEAFF TRBV6-2*01,TRBV6-3*01 TRBJ1-1*01 22.0 959.0 CAVNAHGGADGLTF_CASSYSGPNTEAFF 1 9147 MART1-ALA MART1 0.42 269 NEG 143 9004 2 HomoSapiens MART1 ALAGIGILTV Naive T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*02:01 B2M MHCI -8749 chip0423_105823 8.03 8.79 Chip2 healthy_4 healthy TGTGCTGTGAGAGACATCTGGGGCGGCACCTCCCCCTACATCTTT CAVRDIWGGTSPYIF TRAV3*01 TRAJ40*01 38.0 1804.0 TGCAGTGCCCTCGACACAGTTCTTAATGAAAAACTGTTTTTT CSALDTVLNEKLFF TRBV20-1*01 TRBJ1-4*01 16.0 635.0 CAVRDIWGGTSPYIF_CSALDTVLNEKLFF 1 5573 EBV-BRLF1 EBV 0.92 1264 EBV-BRLF1 122 5451 8 EBV BRLF1 YVLDHLIVV effector memory T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*02:01 B2M MHCI -8750 chip0423_644905 15.63 11.33 Chip2 T1D_6 T1D TGCAGCGCCGGCAGGGACGGGACTAATGAAAAACTGTTTTTT CSAGRDGTNEKLFF TRBV29-1*01 TRBJ1-4*01 108.0 5427.0 _CSAGRDGTNEKLFF 159 2750 EBV-BLMF1 EBV 0.5 2531 NEG 161 2589 12 EBV BLMF1 GLCTLVAML effector T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*02:01 B2M MHCI -8751 chip0423_549073 13.24 8.04 Chip2 T1D_5 T1D TGTGCACTGAGTGAGGGTGCGGCTGGAGGCTTCAAAACTCTCTTT CALSEGAAGGFKTLF TRAV14/DV4*01 TRAJ9*01 31.0 1403.0 TGTGCCAGCAGCTTAACAGGGACGCGTGAAGCTTTCTTT CASSLTGTREAFF TRBV7-9*01 TRBJ1-1*01 19.0 939.0 CALSEGAAGGFKTLF_CASSLTGTREAFF 1 3190 BZLF1-190-197 EBV 0.44 2156 NEG 152 3038 10 EBV BZLF1 RAKFKQLL effector memory T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-B*08:01 B2M MHCI -8752 chip0423_279099 -2.28 12.58 Chip2 T1D_5 T1D TGTGCTCTGAGTGAGGGAACCTCAGGAACCTACAAATACATCTTT CALSEGTSGTYKYIF TRAV19*01 TRAJ40*01 64.0 1912.0 TGTGCCAGCGCATTGGGCAGTGGTAGCCTTGGCTACACCTTC CASALGSGSLGYTF TRBV7-9*01 TRBJ1-2*01 23.0 1279.0 CALSEGTSGTYKYIF_CASALGSGSLGYTF 1 4144 GFAP-ALD-9 GFAP 0.62 11 NEG 133 4011 1 HomoSapiens GFAP ALDIEIATY Naive T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*01:01 B2M MHCI -8753 chip0423_627341 6.2 12.56 Chip2 T1D_6 T1D TGTGCCAGTAGTATTTTCAGCGGCTCCTACAATGAGCAGTTCTTC CASSIFSGSYNEQFF TRBV19*01 TRBJ2-1*01 6.0 310.0 _CASSIFSGSYNEQFF 1 6122 M1 FLU 0.59 1250 NEG 171 5951 7 InfluenzaA M1 GILGFVFTL transitional T cells between effector and memory populations PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*02:01 B2M MHCI -8754 chip0423_512075 10.5 11.12 Chip2 healthy_4 healthy TGTGCCAGCAGCTCCGGACAGGCCTACGAGCAGTACTTC CASSSGQAYEQYF TRBV7-8*01 TRBJ2-7*01 31.0 1922.0 _CASSSGQAYEQYF 49 3461 EBNA3A-193-201 EBV 0.73 1022 NEG 128 3333 9 EBV EBNA3A FLRGRAYGL effector memory T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-B*08:01 B2M MHCI -8755 chip0423_729305 13.16 9.35 Chip2 T1D_4 T1D TGTGCCAGCAGCTTAGCGGTCGGAGAAGGGCCCCAGCATTTT CASSLAVGEGPQHF TRBV7-9*01 TRBJ1-5*01 20.0 620.0 _CASSLAVGEGPQHF 113 3960 BZLF1-190-197 EBV 0.68 2156 BZLF1-190-197 156 3804 10 EBV BZLF1 RAKFKQLL effector memory T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-B*08:01 B2M MHCI -8756 chip0423_782316 6.94 13.47 Chip2 T1D_6 T1D _ 6746 5089 M1 FLU 0.79 1250 M1 128 4961 7 InfluenzaA M1 GILGFVFTL transitional T cells between effector and memory populations PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*02:01 B2M MHCI -8757 chip0423_133062 11.46 8.67 Chip2 T1D_6 T1D TGCATCCTCCCACTTGCTGGTGGTACTGGCTATGGAAAGCTGACATTT CILPLAGGTGYGKLTF TRAV26-2*01 TRAJ52*01 45.0 1996.0 TGTGCCAGCAGCTTGGGACAGGCCTACGAGCAGTACTTC CASSLGQAYEQYF TRBV7-8*01 TRBJ2-7*01 20.0 1116.0 CILPLAGGTGYGKLTF_CASSLGQAYEQYF 1 4081 EBNA3A-193-201 EBV 0.82 1022 NEG 137 3944 10 EBV EBNA3A FLRGRAYGL effector memory T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-B*08:01 B2M MHCI -8758 chip0423_738637 -2.98 13.95 Chip2 T1D_4 T1D TGCGCCAGCAGCTCCCGACAGAACACTGAAGCTTTCTTT CASSSRQNTEAFF TRBV5-1*01 TRBJ1-1*01 53.0 3171.0 _CASSSRQNTEAFF 1 3770 PGT-178 PGT 0.95 1480 PGT-178 145 3625 1 HomoSapiens PGT LLAGIGTVPI Naive T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*02:01 B2M MHCI -8759 chip0423_657430 11.75 10.8 Chip2 T1D_5 T1D TGCGCCAGCAGCCTCAGTTCGGGGGGCCGTGGCGAGCAGTACTTC CASSLSSGGRGEQYF TRBV4-1*01 TRBJ2-7*01 13.0 758.0 _CASSLSSGGRGEQYF 11 4039 BZLF1-190-197 EBV 0.56 2156 BZLF1-190-197 147 3892 9 EBV BZLF1 RAKFKQLL effector memory T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-B*08:01 B2M MHCI -8760 chip0423_419274 -1.77 7.71 Chip2 healthy_3 healthy _ 6746 4953 PGT-178 PGT 0.47 1480 NEG 161 4792 4 HomoSapiens PGT LLAGIGTVPI Naive T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*02:01 B2M MHCI -8761 chip0423_358200 13.52 8.24 Chip2 T1D_4 T1D TGTGCCGCGCCTTCAGGATACAGCACCCTCACCTTT CAAPSGYSTLTF TRAV8-1*01 TRAJ11*01 6.0 564.0 TGTGCCAGCAGTTTCCTAAGGGGTAGCAATCAGCCCCAGCATTTT CASSFLRGSNQPQHF TRBV28*01 TRBJ1-5*01 34.0 1211.0 CAAPSGYSTLTF_CASSFLRGSNQPQHF 1 2690 EBV-BRLF1 EBV 0.6 1264 NEG 157 2533 10 EBV BRLF1 YVLDHLIVV effector memory T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*02:01 B2M MHCI -8762 chip0423_196781 -3.47 13.16 Chip2 healthy_3 healthy _ 6746 3451 GFAP-ALD-9 GFAP 0.82 11 GFAP-ALD-9 118 3333 1 HomoSapiens GFAP ALDIEIATY Naive T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*01:01 B2M MHCI -8763 chip0423_334136 7.34 13.41 Chip2 healthy_3 healthy TGTGCCAGCAGCTTGGAGCCGCATGGCTACACCTTC CASSLEPHGYTF TRBV5-4*01 TRBJ1-2*01 19.0 1228.0 _CASSLEPHGYTF 2 4068 NP44-52 FLU 0.61 474 NP44-52 130 3938 7 InfluenzaA NP CTELKLSDY transitional T cells between effector and memory populations PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*01:01 B2M MHCI -8764 chip0423_41304 10.44 8.7 Chip2 healthy_4 healthy TGTGCCAGCAGCTCCGGACAGGCCTACGAGCAGTACTTC CASSSGQAYEQYF TRBV7-8*01 TRBJ2-7*01 10.0 780.0 _CASSSGQAYEQYF 49 4382 EBNA3A-193-201 EBV 1.0 1022 EBNA3A-193-201 142 4240 10 EBV EBNA3A FLRGRAYGL effector memory T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-B*08:01 B2M MHCI -8765 chip0423_715852 9.64 11.18 Chip2 T1D_5 T1D TGTGCCAGCCAACTAGCGGGAGGCACCGGGGAGCTGTTTTTT CASQLAGGTGELFF TRBV24-1*01 TRBJ2-2*01 58.0 3583.0 _CASQLAGGTGELFF 69 4861 BZLF1-190-197 EBV 0.67 2156 NEG 133 4728 9 EBV BZLF1 RAKFKQLL effector memory T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-B*08:01 B2M MHCI -8766 chip0423_431063 -2.63 11.56 Chip2 T1D_5 T1D TGTGCTGGGCAGGAGATTTACGGAAACGACCTGGTCTTT CAGQEIYGNDLVF TRAV35*01 TRAJ47*01 23.0 1130.0 TGCAGCGTTGAAGACCCCAGACGGAACTACGAGCAGTACTTC CSVEDPRRNYEQYF TRBV29-1*01 TRBJ2-7*01 101.0 6227.0 CAGQEIYGNDLVF_CSVEDPRRNYEQYF 1 4650 ZNT8-YAK-9 ZNT8 0.45 59 NEG 145 4505 1 HomoSapiens ZNT8 YAKWKLCSA Naive T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-B*08:01 B2M MHCI -8767 chip0423_357129 -3.48 9.07 Chip2 T1D_4 T1D TGTGCTGTGCAGGCACCGATAGGCTTT CAVQAPIGF TRAV20*01 TRAJ37*01 2.0 6.0 CAVQAPIGF_ 1 7025 PTPRN-962-970 PTPRN 0.88 5 NEG 135 6890 2 HomoSapiens PTPRN ALTAVAEEV Naive T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*02:01 B2M MHCI -8768 chip0423_22739 11.67 6.29 Chip2 healthy_3 healthy TGTGTGGCGATAGCATCAGGAGGAAGCTACATACCTACATTT CVAIASGGSYIPTF TRAV12-1*01 TRAJ6*01 75.0 4000.0 TGTGCCAGCAGCCAAGATTCCACACCCCTCCACTTT CASSQDSTPLHF TRBV4-2*01 TRBJ1-6*01 96.0 4852.0 CVAIASGGSYIPTF_CASSQDSTPLHF 2 6768 EBV-LMP1-2 EBV 0.69 41 EBV-LMP1-2 140 6628 6 EBV LMP1 YLQQNWWTL central memory T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*02:01 B2M MHCI -8769 chip0423_817773 -2.48 8.22 Chip2 T1D_4 T1D TGTGCTGTGATTCCCTCCAATGACATGCGCTTT CAVIPSNDMRF TRAV8-6*01 TRAJ43*01 2.0 11.0 TGTGCCTGTAGCTCTGGCAGGAACTCTGGCTACACCTTC CACSSGRNSGYTF TRBV30*01 TRBJ1-2*01 10.0 778.0 CAVIPSNDMRF_CACSSGRNSGYTF 1 6741 NP44-52 FLU 0.89 474 NP44-52 134 6607 2 InfluenzaA NP CTELKLSDY Naive T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*01:01 B2M MHCI -8770 chip0423_711063 5.54 8.6 Chip2 T1D_4 T1D TGTGCTCTCACTACCTATGGTCAGAATTTTGTCTTT CALTTYGQNFVF TRAV38-1*01 TRAJ26*01 21.0 1556.0 TGCAGTGCCTCTCGTGACTCCTACGAGCAGTACTTC CSASRDSYEQYF TRBV20-1*01 TRBJ2-7*01 34.0 3482.0 CALTTYGQNFVF_CSASRDSYEQYF 15 9657 EBV-LMP1-1 EBV 0.77 237 EBV-LMP1-1 149 9508 6 EBV LMP1 YLLEMLWRL central memory T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*02:01 B2M MHCI -8771 chip0423_304705 14.86 10.68 Chip2 T1D_6 T1D TGCATCCTCCCACTTGCTGGTGGTACTAGCTATGGAAAGCTGACATTT CILPLAGGTSYGKLTF TRAV26-2*01 TRAJ52*01 52.0 3135.0 TGTGCCAGCAGCTTGGGACAGGCCTACGAGCAGTACTTC CASSLGQAYEQYF TRBV7-8*01 TRBJ2-7*01 14.0 1070.0 CILPLAGGTSYGKLTF_CASSLGQAYEQYF 308 6421 EBNA3A-193-201 EBV 0.91 1022 EBNA3A-193-201 139 6282 12 EBV EBNA3A FLRGRAYGL effector T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-B*08:01 B2M MHCI -8772 chip0423_30137 -0.19 9.11 Chip2 T1D_5 T1D TGTGCCATTCCCCCTGGGACTGGAATGTTCAATGAGCAGTTCTTC CAIPPGTGMFNEQFF TRBV2*01 TRBJ2-1*01 6.0 461.0 _CAIPPGTGMFNEQFF 1 5991 GAD2-EAK-10 GAD65 0.41 14 NEG 125 5866 4 HomoSapiens GAD2 EAKQKGFVPF Naive T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-B*08:01 B2M MHCI -8773 chip0423_776405 12.06 6.89 Chip2 T1D_6 T1D TGCATCCTCCCACTTGCTGGTGGTACTAGCTATGGAAAGCTGACATTT CILPLAGGTSYGKLTF TRAV26-2*01 TRAJ52*01 38.0 2190.0 TGTGCCAGCAGCTTGGGACAGGCCTACGAGCAGTACTTC CASSLGQAYEQYF TRBV7-8*01 TRBJ2-7*01 28.0 1664.0 CILPLAGGTSYGKLTF_CASSLGQAYEQYF 308 5799 EBNA3A-193-201 EBV 0.8 1022 EBNA3A-193-201 157 5642 10 EBV EBNA3A FLRGRAYGL effector memory T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-B*08:01 B2M MHCI -8774 chip0423_594855 -4.13 8.4 Chip2 T1D_6 T1D _ 6746 8340 CVB3-P3A CVB 0.65 77 NEG 128 8212 2 CoxsackievirusB P3A GIIYIIYKL Naive T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*02:01 B2M MHCI -8775 chip0423_580151 -3.74 12.37 Chip2 T1D_4 T1D TGTGCAATGAGCATATCTAACTTTGGAAATGAGAAATTAACCTTT CAMSISNFGNEKLTF TRAV12-3*01 TRAJ48*01 67.0 3008.0 CAMSISNFGNEKLTF_ 13 4701 PGT-178 PGT 0.73 1480 PGT-178 124 4577 1 HomoSapiens PGT LLAGIGTVPI Naive T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*02:01 B2M MHCI -8776 chip0423_459504 11.73 10.55 Chip2 T1D_6 T1D TGCAGCGCCGGCAGGGACGGGACTAATGAAAAACTGTTTTTT CSAGRDGTNEKLFF TRBV29-1*01 TRBJ1-4*01 73.0 3762.0 _CSAGRDGTNEKLFF 159 6234 EBV-BLMF1 EBV 0.78 2531 NEG 156 6078 9 EBV BLMF1 GLCTLVAML effector memory T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*02:01 B2M MHCI -8777 chip0423_146839 15.88 11.54 Chip2 T1D_6 T1D TGCATCCTCCCACTTGCTGGTGGTACTCGCTATGGGAAGCTGACATTT CILPLAGGTRYGKLTF TRAV26-2*01 TRAJ52*01 34.0 1531.0 TGTGCCAGCAGCTTGGGACAGGCCTACGAGCAGTACTTC CASSLGQAYEQYF TRBV7-8*01 TRBJ2-7*01 20.0 1116.0 CILPLAGGTRYGKLTF_CASSLGQAYEQYF 5 3358 EBNA3A-193-201 EBV 0.5 1022 NEG 193 3165 12 EBV EBNA3A FLRGRAYGL effector T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-B*08:01 B2M MHCI -8778 chip0423_297067 4.89 11.56 Chip2 T1D_6 T1D _ 6746 3427 IAPP-STN-9 IAPP 0.79 48 IAPP-STN-9 138 3289 6 HomoSapiens IAPP STNVGSNTY central memory T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*01:01 B2M MHCI -8779 chip0423_776175 11.2 12.77 Chip2 T1D_4 T1D TGTGCCCTGTCGGGCAGCAGTGCTTCCAAGATAATCTTT CALSGSSASKIIF TRAV14/DV4*01 TRAJ3*01 94.0 8273.0 CALSGSSASKIIF_ 2 2873 BZLF1-190-197 EBV 1.0 2156 NEG 149 2724 11 EBV BZLF1 RAKFKQLL effector T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-B*08:01 B2M MHCI -8780 chip0423_698719 12.44 11.06 Chip2 T1D_5 T1D TGTGCAATGAGAGAGGGCGAGGGTGGAGGCTTCAAAACTATCTTT CAMREGEGGGFKTIF TRAV14/DV4*01 TRAJ9*01 161.0 6011.0 TGTGCCAGCAGCTCCGGACTAGCGGGGGGCTCTCACACCGGGGAGCTGTTTTTT CASSSGLAGGSHTGELFF TRBV11-1*01 TRBJ2-2*01 18.0 615.0 CAMREGEGGGFKTIF_CASSSGLAGGSHTGELFF 10 3233 BZLF1-190-197 EBV 0.53 2156 NEG 143 3090 9 EBV BZLF1 RAKFKQLL effector memory T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-B*08:01 B2M MHCI -8781 chip0423_260130 10.86 10.71 Chip2 T1D_4 T1D TGTGCTGTCAATTCAGGACACACACCTCTTGTCTTT CAVNSGHTPLVF TRAV1-2*01 TRAJ29*01 2.0 42.0 TGTGCCAGCAGCCAAGTCAACAACCCGGGGGATGGCTACACCTTC CASSQVNNPGDGYTF TRBV14*01 TRBJ1-2*01 14.0 367.0 CAVNSGHTPLVF_CASSQVNNPGDGYTF 2 4900 EBNA3A-158-166 EBV 0.67 444 NEG 185 4715 9 EBV EBNA3A QAKWRLQTL effector memory T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-B*08:01 B2M MHCI -8782 chip0423_145123 8.9 8.96 Chip2 T1D_5 T1D TGTGCCAGCGGCTCCTTGGGGTCACAGAACACTGAAGCTTTCTTT CASGSLGSQNTEAFF TRAV38-1*01,TRAV36/DV7*01 TRAJ40*01 2.0 6.0 TGTGCCAGCAGCTCCTTGGGGACACAGAACACTGAAGCTTTCTTT CASSSLGTQNTEAFF TRBV7-9*01 TRBJ1-1*01 67.0 2353.0 CASGSLGSQNTEAFF_CASSSLGTQNTEAFF 1 5964 BZLF1-190-197 EBV 0.65 2156 BZLF1-190-197 141 5823 8 EBV BZLF1 RAKFKQLL effector memory T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-B*08:01 B2M MHCI -8783 chip0423_791046 6.35 12.0 Chip2 T1D_6 T1D TGCGCTGTGAGAGAATATGGAAACAAACTGGTCTTT CAVREYGNKLVF TRAV1-1*01 TRAJ47*01 10.0 765.0 TGTGCCAGCAGCTTAGCGGGTCGTGAGGGTACGCAGTATTTT CASSLAGREGTQYF TRBV11-3*01 TRBJ2-3*01 15.0 669.0 CAVREYGNKLVF_CASSLAGREGTQYF 7 8129 NP380-388 FLU 0.58 60 NP380-388 156 7973 7 InfluenzaA NP ELRSRYWAI transitional T cells between effector and memory populations PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-B*08:01 B2M MHCI -8784 chip0423_734579 10.41 9.96 Chip2 T1D_6 T1D TGTGCAGCAAGCAGGTTAGGGGAGGAGGTGCTGCCGCCCTCCCCTTT CAASRLGga?GGAAALPF TRAV23/DV6*01 TRAJ45*01 40.0 2044.0 CAASRLGga?GGAAALPF_ 1 4673 EBNA3A-193-201 EBV 0.72 1022 EBNA3A-193-201 157 4516 9 EBV EBNA3A FLRGRAYGL effector memory T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-B*08:01 B2M MHCI -8785 chip0423_579001 11.13 7.07 Chip2 T1D_5 T1D TGTGCCAGCAGCGGACCTAAACTGTTCGCGAACACCGGGGAGCTGTTTTTT CASSGPKLFANTGELFF TRBV11-2*01 TRBJ2-2*01 65.0 2055.0 _CASSGPKLFANTGELFF 1 5475 BZLF1-190-197 EBV 0.69 2156 BZLF1-190-197 138 5337 10 EBV BZLF1 RAKFKQLL effector memory T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-B*08:01 B2M MHCI -8786 chip0423_108860 11.3 9.62 Chip2 T1D_4 T1D TGTGCTGTCAATTCAGAAAACACACCTCTTGTCTTT CAVNSENTPLVF TRAV1-2*01 TRAJ29*01 20.0 1471.0 CAVNSENTPLVF_ 1 4067 EBNA3A-158-166 EBV 0.72 444 NEG 140 3927 9 EBV EBNA3A QAKWRLQTL effector memory T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-B*08:01 B2M MHCI -8787 chip0423_842626 15.89 11.23 Chip2 T1D_5 T1D TGTGCCAGCAGTTTACTAGGGGGCGCGGGTTCACCCCTCCACTTT CASSLLGGAGSPLHF TRBV12-3*01,TRBV12-4*01 TRBJ1-6*01 34.0 1748.0 _CASSLLGGAGSPLHF 1 2058 BZLF1-190-197 EBV 0.54 2156 NEG 134 1924 12 EBV BZLF1 RAKFKQLL effector T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-B*08:01 B2M MHCI -8788 chip0423_485404 -2.02 10.52 Chip2 healthy_3 healthy TGTGCAATGAGCCACATGAACAGAGATGACAAGATCATCTTT CAMSHMNRDDKIIF TRAV12-3*01 TRAJ30*01 59.0 2317.0 TGTGCCAGCAGTTCCACAGGGGGAGACTATGGCTACACCTTT CASSSTGGDYGYTF TRBV11-1*01 TRBJ1-2*01 19.0 771.0 CAMSHMNRDDKIIF_CASSSTGGDYGYTF 1 4851 PGT-178 PGT 0.53 1480 NEG 125 4726 3 HomoSapiens PGT LLAGIGTVPI Naive T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*02:01 B2M MHCI -8789 chip0423_815568 12.42 11.13 Chip2 T1D_5 T1D TGTGCAATGAGGGCCATTGAGGGGGCAAACAACCTCTTCTTT CAMRAIEGANNLFF TRAV14/DV4*01 TRAJ36*01 23.0 1982.0 CAMRAIEGANNLFF_ 17 2774 BZLF1-190-197 EBV 0.65 2156 NEG 124 2650 9 EBV BZLF1 RAKFKQLL effector memory T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-B*08:01 B2M MHCI -8790 chip0423_568062 -2.83 10.54 Chip2 T1D_6 T1D TGTGTGGCTCCGGAAACCTCCTACGACAAGGTGATATAT CVAPETSYDKVIY TRAV13-1*01 TRAJ50*01 4.0 172.0 CVAPETSYDKVIY_ 1 5594 IAPP-STN-9 IAPP 0.68 48 NEG 126 5468 3 HomoSapiens IAPP STNVGSNTY Naive T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*01:01 B2M MHCI -8791 chip0423_379883 11.63 9.83 Chip2 T1D_6 T1D TGCATCCTCCCACTTGCTGGTGGTACTAGCTATGGAAAGCTGACATTT CILPLAGGTSYGKLTF TRAV26-2*01 TRAJ52*01 35.0 1423.0 TGTGCCAGCAGCTTGGGACAGGCCTACGAGCAGTACTTC CASSLGQAYEQYF TRBV7-8*01 TRBJ2-7*01 11.0 547.0 CILPLAGGTSYGKLTF_CASSLGQAYEQYF 308 3727 EBNA3A-193-201 EBV 0.81 1022 EBNA3A-193-201 158 3569 9 EBV EBNA3A FLRGRAYGL effector memory T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-B*08:01 B2M MHCI -8792 chip0423_222889 6.22 14.2 Chip2 healthy_3 healthy TGCAGTGCCGATTCCTACCGGGACATTGATAACTATGGCTACACCTTC CSADSYRDIDNYGYTF TRBV20-1*01 TRBJ1-2*01 45.0 2457.0 _CSADSYRDIDNYGYTF 8 7649 NP44-52 FLU 0.76 474 NP44-52 135 7514 7 InfluenzaA NP CTELKLSDY transitional T cells between effector and memory populations PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*01:01 B2M MHCI -8793 chip0423_118328 12.0 6.42 Chip2 T1D_6 T1D TGCATCCTCCCACTTGCTGGTGGTACTAGCTATGGAAAGCTGACATTT CILPLAGGTSYGKLTF TRAV26-2*01 TRAJ52*01 37.0 1415.0 TGTGCCAGCAGCTTGGGACAGGCCTACGAGCAGTACTTC CASSLGQAYEQYF TRBV7-8*01 TRBJ2-7*01 22.0 1487.0 CILPLAGGTSYGKLTF_CASSLGQAYEQYF 308 4920 EBNA3A-193-201 EBV 0.96 1022 EBNA3A-193-201 183 4737 10 EBV EBNA3A FLRGRAYGL effector memory T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-B*08:01 B2M MHCI -8794 chip0423_796154 -3.78 12.17 Chip2 T1D_4 T1D _ 6746 3878 ZNT8-153-161 ZNT8 0.82 41 ZNT8-153-161 124 3754 1 HomoSapiens ZNT8 VVTGVLVYL Naive T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*02:01 B2M MHCI -8795 chip0423_723545 11.31 7.39 Chip2 T1D_5 T1D TGTGCCAGCAGTCCGCCCGGGTCTAATGAAAAACTGTTTTTT CASSPPGSNEKLFF TRAV9-2*01 TRAJ5*01 2.0 7.0 TGTGCCAGCAGTCCGCCCGGGTCTAATGAAAAACTGTTTTTT CASSPPGSNEKLFF TRBV12-3*01,TRBV12-4*01 TRBJ1-4*01 32.0 1294.0 CASSPPGSNEKLFF_CASSPPGSNEKLFF 2 4071 BZLF1-190-197 EBV 0.58 2156 NEG 158 3913 10 EBV BZLF1 RAKFKQLL effector memory T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-B*08:01 B2M MHCI -8796 chip0423_562934 7.4 9.69 Chip2 healthy_3 healthy TGTGGCCAGCAGTTTGGGGGAGCCCCAGTACTTC CGQQFgg??ggEPQYF TRBV27*01 TRBJ2-5*01 12.0 845.0 _CGQQFgg??ggEPQYF 1 8430 MART1-ALA MART1 0.53 269 NEG 123 8307 7 HomoSapiens MART1 ALAGIGILTV transitional T cells between effector and memory populations PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*02:01 B2M MHCI -8797 chip0423_530485 9.49 10.29 Chip2 T1D_6 T1D TGTCCACAGAGTACAGGCACACTAATCTTT CPQSTGTLIF TRAV5*01 TRAJ37*01 3.0 20.0 TGCAGCGCCGGCAGGGACGGGACTAATGAAAAACTGTTTTTT CSAGRDGTNEKLFF TRBV29-1*01 TRBJ1-4*01 92.0 4477.0 CPQSTGTLIF_CSAGRDGTNEKLFF 1 6206 EBV-BLMF1 EBV 0.89 2531 NEG 135 6071 9 EBV BLMF1 GLCTLVAML effector memory T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*02:01 B2M MHCI -8798 chip0423_527641 -4.42 8.63 Chip2 T1D_6 T1D TGTGCCTGTCAAACTGACAGCCGGGGGGAATTGCAGTTT CACQTDSRGELQF TRAV12-2*01 TRAJ24*01 12.0 917.0 TGTGCCAGCAGTTTACCCCTTTCAGGGTTCTATGAGCAGTTCTTC CASSLPLSGFYEQFF TRBV12-3*01,TRBV12-4*01 TRBJ2-1*01 9.0 509.0 CACQTDSRGELQF_CASSLPLSGFYEQFF 1 6373 PGT-178 PGT 0.67 1480 PGT-178 128 6245 2 HomoSapiens PGT LLAGIGTVPI Naive T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*02:01 B2M MHCI -8799 chip0423_659824 9.83 8.36 Chip2 T1D_5 T1D TGTGCCAGCAGCCCGCTGGGGGCAGGGGAAAAACTGTTTTTT CASSPLGAGEKLFF TRAV36/DV7*01 TRAJ5*01 2.0 7.0 TGTGCCAGCAGCCCGCTGGGGGAAGGGGAAAAACTGTTTTTT CASSPLGEGEKLFF TRBV7-9*01 TRBJ1-4*01 83.0 3980.0 CASSPLGAGEKLFF_CASSPLGEGEKLFF 1 4846 BZLF1-190-197 EBV 0.58 2156 NEG 135 4711 8 EBV BZLF1 RAKFKQLL effector memory T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-B*08:01 B2M MHCI -8800 chip0423_228225 7.61 10.22 Chip2 healthy_3 healthy _ 6746 9169 NP44-52 FLU 0.72 474 NP44-52 144 9025 7 InfluenzaA NP CTELKLSDY transitional T cells between effector and memory populations PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*01:01 B2M MHCI -8801 chip0423_796606 9.02 9.2 Chip2 T1D_5 T1D TGTGCCAGCCAACTAGCGGGAGGCACCGGGGAGCTGTTTTTT CASQLAGGTGELFF TRBV24-1*01 TRBJ2-2*01 11.0 576.0 _CASQLAGGTGELFF 69 3132 BZLF1-190-197 EBV 0.74 2156 NEG 176 2956 8 EBV BZLF1 RAKFKQLL effector memory T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-B*08:01 B2M MHCI -8802 chip0423_733078 -0.22 7.91 Chip2 T1D_5 T1D TGTGCTCTGAGTGAGGATAGGATTGTGAACACCGGTAACCAGTTCTATTTT CALSEDRIVNTGNQFYF TRAV19*01 TRAJ49*01 95.0 3370.0 CALSEDRIVNTGNQFYF_ 1 9017 ZNT8-VTD-9 ZNT8 0.75 65 ZNT8-VTD-9 127 8890 4 HomoSapiens ZNT8 VTDAAHLLI Naive T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*01:01 B2M MHCI -8803 chip0423_558168 -2.15 9.66 Chip2 T1D_6 T1D TGTCCTCCGGTTCCGGCTTCTGCAGGAAGCCAAGGAAATCTCATCTTT CPPVPASAGSQGNLIF TRAV17*01 TRAJ42*01 23.0 513.0 TGTGCCAGCAGCGTAGGGTTCGGTCCGAACACTGAAGCTTTCTTT CASSVGFGPNTEAFF TRBV9*01 TRBJ1-1*01 24.0 1275.0 CPPVPASAGSQGNLIF_CASSVGFGPNTEAFF 1 8476 ZNT8-145-153 ZNT8 0.84 14 ZNT8-145-153 150 8326 3 HomoSapiens ZNT8 LLSILCIWV Naive T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*02:01 B2M MHCI -8804 chip0423_526631 11.33 9.77 Chip2 T1D_4 T1D TGTGCCAGCAGCCAAGTCAACAACCCGGGGGATGGCTACACCTTC CASSQVNNPGDGYTF TRBV14*01 TRBJ1-2*01 19.0 572.0 _CASSQVNNPGDGYTF 94 5162 EBNA3A-158-166 EBV 0.74 444 NEG 147 5015 9 EBV EBNA3A QAKWRLQTL effector memory T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-B*08:01 B2M MHCI -8805 chip0423_334189 -0.66 9.62 Chip2 T1D_5 T1D TGTGCTCTGAGTGGTATTTATGACAAGATCATCTTT CALSGIYDKIIF TRAV19*01 TRAJ30*01 23.0 1813.0 TGTGCCAGCAGTTTACGGACAGGGAACACTGAAGCTTTCTTT CASSLRTGNTEAFF TRBV27*01 TRBJ1-1*01 31.0 1201.0 CALSGIYDKIIF_CASSLRTGNTEAFF 1 6974 NP140-148 FLU 0.79 102 NP140-148 140 6834 3 InfluenzaA NP HSNLNDATY Naive T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*01:01 B2M MHCI -8806 chip0423_71396 -1.36 10.45 Chip2 healthy_3 healthy TGTGCCGTGATGTGGGGTTACCAGAAAGTTACCTTT CAVMWGYQKVTF TRAV12-2*01 TRAJ13*01 1.0 38.0 TGTGCCAGCAGTCCTAGCGGAAACTACGAGCAGTACTTC CASSPSGNYEQYF TRBV27*01 TRBJ2-7*01 44.0 2657.0 CAVMWGYQKVTF_CASSPSGNYEQYF 1 7125 ZNT8-153-161 ZNT8 0.56 41 NEG 114 7011 3 HomoSapiens ZNT8 VVTGVLVYL Naive T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*02:01 B2M MHCI -8807 chip0423_6812 15.88 9.75 Chip2 tet_neg TGTGCAATGAGCGACCCTAGAAAAACCTCCTACGACAAGGTGATATTT CAMSDPRKTSYDKVIF TRAV12-3*01 TRAJ50*01 44.0 2009.0 TGTGCCAGCAGTGCACAGGGGGAGGGCGTCCAAAACATTCAGTACTTC CASSAQGEGVQNIQYF TRBV25-1*01 TRBJ2-4*01 77.0 2856.0 CAMSDPRKTSYDKVIF_CASSAQGEGVQNIQYF 1 2421 G6PC2-LTS-10 IGRP 0.45 59 NEG 163 2258 12 HomoSapiens G6PC2 LTSLTILQLY effector T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*01:01 B2M MHCI -8808 chip0423_4145 15.06 12.59 Chip2 T1D_5 T1D TGTGCAATGAGAGAGGGCGAGAGTGGAGGCTTCAAAACTATCTTT CAMREGESGGFKTIF TRAV14/DV4*01 TRAJ9*01 86.0 3513.0 TGTGCCAGCAGCTCCGGACTAGCGGGGGACTCTCACACCGGGGAGCTGTTTTTT CASSSGLAGDSHTGELFF TRBV11-1*01 TRBJ2-2*01 3.0 64.0 CAMREGESGGFKTIF_CASSSGLAGDSHTGELFF 1 2551 BZLF1-190-197 EBV 0.62 2156 NEG 155 2396 12 EBV BZLF1 RAKFKQLL effector T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-B*08:01 B2M MHCI -8809 chip0423_503267 -2.13 7.95 Chip2 T1D_6 T1D TGTGCTTTGGGGGACTCTGGGGCTGGGAGTTCCCCACTCCCTTTC CALGDSGAGSSPLPF TRAV20*01 TRAJ28*01 4.0 101.0 TGTGCCAGCAGCCAAGAAGTCGGCCAAGAGACCCAGTACTTC CASSQEVGQETQYF TRBV4-2*01 TRBJ2-5*01 12.0 337.0 CALGDSGAGSSPLPF_CASSQEVGQETQYF 1 8035 ZNT8-186-194 ZNT8 0.5 22 NEG 155 7880 3 HomoSapiens ZNT8 VAANIVLTV Naive T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*02:01 B2M MHCI -8810 chip0423_273479 9.2 9.83 Chip2 healthy_4 healthy TGTGCCAGCAGCACGACCCGCGCAGGGACTTGGCCCCTCCACTTT CASSTTRAGTWPLHF TRBV7-9*01 TRBJ1-6*01 47.0 1472.0 _CASSTTRAGTWPLHF 18 5138 BZLF1-190-197 EBV 1.0 2156 NEG 150 4988 8 EBV BZLF1 RAKFKQLL effector memory T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-B*08:01 B2M MHCI -8811 chip0423_374263 -3.14 8.69 Chip2 T1D_4 T1D TGTGCTCTGAGTGAGGCGGTGAATTATGGAGGAAGCCAAGGAAATCTCATCTTT CALSEAVNYGGSQGNLIF TRAV19*01 TRAJ42*01 45.0 914.0 CALSEAVNYGGSQGNLIF_ 1 5240 ZNT8-VTD-9 ZNT8 0.86 65 ZNT8-VTD-9 129 5111 2 HomoSapiens ZNT8 VTDAAHLLI Naive T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*01:01 B2M MHCI -8812 chip0423_153494 -1.74 6.96 Chip2 T1D_6 T1D TGCAGCGGACAATGGGACTACCCCTACGAGCAGTACTTC CSGQWDYPYEQYF TRBV29-1*01 TRBJ2-7*01 19.0 544.0 _CSGQWDYPYEQYF 1 8925 PA-46-54 FLU 0.77 18 NEG 137 8788 3 InfluenzaA PA FMYSDFHFI Naive T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*02:01 B2M MHCI -8813 chip0423_94707 14.11 12.91 Chip2 T1D_4 T1D TGCATCGTCAGAGAGGGAGGAGGTGCTGACGGACTCCCCTTT CIVREGGGADGLPF TRAV26-1*01 TRAJ45*01 3.0 243.0 TGTGCCAGCAGCTTAGCGGTCGGAGGAGGGCCCCAGCATTTT CASSLAVGGGPQHF TRBV7-9*01 TRBJ1-5*01 9.0 245.0 CIVREGGGADGLPF_CASSLAVGGGPQHF 1 2198 BZLF1-190-197 EBV 0.96 2156 BZLF1-190-197 166 2032 12 EBV BZLF1 RAKFKQLL effector T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-B*08:01 B2M MHCI -8814 chip0423_837693 11.59 10.73 Chip2 T1D_4 T1D TGCATCGTCAGAGAGGGAGGAGGTGCTGACGGACTCCCCTTT CIVREGGGADGLPF TRAV26-1*01 TRAJ45*01 39.0 2461.0 TGTGCCAGCAGCTTAGCGGTCGGAGAAGGGCCCCAGCATTTT CASSLAVGEGPQHF TRBV7-9*01 TRBJ1-5*01 15.0 638.0 CIVREGGGADGLPF_CASSLAVGEGPQHF 21 3060 BZLF1-190-197 EBV 0.8 2156 NEG 138 2922 9 EBV BZLF1 RAKFKQLL effector memory T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-B*08:01 B2M MHCI -8815 chip0423_669568 15.97 10.19 Chip2 T1D_6 T1D TGTGCTGTCATTCAAACTGGGGCAAACAACCTCTTCTTT CAVIQTGANNLFF TRAV2*01 TRAJ36*01 3.0 31.0 TGTGCAGCGAGGGAAACCTCCTACGACAAGGTGATATTT CAARETSYDKVIF TRAV13-1*01 TRAJ50*01 2.0 13.0 0.29 TGTGCCAGCAGCGTTAGCGGGGCCCCCTACGAGCAGTACTTC CASSVSGAPYEQYF TRBV9*01 TRBJ2-7*01 13.0 681.0 CAVIQTGANNLFF_CASSVSGAPYEQYF 2 2336 EBNA3A-193-201 EBV 1.0 1022 NEG 150 2186 12 EBV EBNA3A FLRGRAYGL effector T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-B*08:01 B2M MHCI -8816 chip0423_205829 -2.56 7.89 Chip2 T1D_5 T1D TGTGCTGCGCTCGGCTTTGGGCATGTGCTGCGTTGCGGGTCCTGCACTCAACTG CAALGFGHVLRCGSCTQL TRAV17*01 TRAJ41*01 2.0 9.0 CAALGFGHVLRCGSCTQL_ 1 7410 PB1-590-599 FLU 0.55 37 NEG 124 7286 2 InfluenzaA PB1 LVSDGGPNLY Naive T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*01:01 B2M MHCI -8817 chip0423_521717 9.18 8.62 Chip2 T1D_4 T1D TGCATCGTCAGAGAGGGAGGAGGTGCTGACGGACTCACCTTT CIVREGGGADGLTF TRAV26-1*01 TRAJ45*01 28.0 1104.0 TGTGCCAGCAGCTTAGCGGTCGGAGAAGGGCCCCAGCATTTT CASSLAVGEGPQHF TRBV7-9*01 TRBJ1-5*01 42.0 2013.0 CIVREGGGADGLTF_CASSLAVGEGPQHF 68 5476 BZLF1-190-197 EBV 0.89 2156 BZLF1-190-197 159 5317 8 EBV BZLF1 RAKFKQLL effector memory T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-B*08:01 B2M MHCI -8818 chip0423_75182 0.21 8.89 Chip2 T1D_6 T1D TGTGCCAGCAGCATACTTCCTGGCGCTGAAGCTTTCTTT CASSILPGAEAFF TRAV14/DV4*01 TRAJ40*01 3.0 6.0 TGTGCCAGCAGCATACTTCCTGGCGCTGAAGCTTTCTTT CASSILPGAEAFF TRBV7-3*01 TRBJ1-1*01 21.0 895.0 CASSILPGAEAFF_CASSILPGAEAFF 1 6896 Gag260-267 HIV 0.42 10 NEG 130 6766 4 HIV-1 Gag EIYKRWII Naive T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-B*08:01 B2M MHCI -8819 chip0423_247965 -2.28 9.64 Chip2 T1D_4 T1D TGCGCCAGCAACCCAACCGGGACTGTGTACGAGCAGTACTTC CASNPTGTVYEQYF TRBV10-2*01 TRBJ2-7*01 18.0 998.0 _CASNPTGTVYEQYF 1 6041 IGRP-265-273 IGRP 0.81 34 IGRP-265-273 118 5923 3 HomoSapiens IGRP VLFGLGFAI Naive T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*02:01 B2M MHCI -8820 chip0423_489483 -1.0 10.01 Chip2 T1D_5 T1D TGTGCAGCTTTCATGGATAGCAACTATCAGTTAATCTGG CAAFMDSNYQLIW TRAV12-3*01 TRAJ33*01 18.0 1252.0 TGTGCCAGCAGTGAAGGCTACGCCTACGAGCAGTACTTC CASSEGYAYEQYF TRBV2*01 TRBJ2-7*01 57.0 3894.0 CAAFMDSNYQLIW_CASSEGYAYEQYF 1 5546 PB1-590-599 FLU 0.5 37 NEG 128 5418 3 InfluenzaA PB1 LVSDGGPNLY Naive T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*01:01 B2M MHCI -8821 chip0423_386695 15.6 8.99 Chip2 T1D_5 T1D TGTGCAATGAGAGAGAAGGAGGGGGCAAACAACCTCTTCTTT CAMREKEGANNLFF TRAV14/DV4*01 TRAJ36*01 11.0 183.0 TGCAGCGTTTACGCGGGCTATGGCTACACCTTC CSVYAGYGYTF TRBV29-1*01 TRBJ1-2*01 24.0 3457.0 CAMREKEGANNLFF_CSVYAGYGYTF 3 3506 BZLF1-190-197 EBV 0.73 2156 NEG 142 3364 12 EBV BZLF1 RAKFKQLL effector T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-B*08:01 B2M MHCI -8822 chip0423_290510 -4.59 9.13 Chip2 healthy_3 healthy TGTGCTGTGGGTGACCCTAAGAGGGCGCCGAGGAGATCTCATCGTT CAVGDPKag??ggRRGDLIV TRAV8-4*01 TRAJ42*01 13.0 255.0 TGTGCCAGCAGCCAACTCTTGCGGGGCCAAAGCACAGATACGCAGTATTTT CASSQLLRGQSTDTQYF TRBV3-1*01 TRBJ2-3*01 22.0 919.0 CAVGDPKag??ggRRGDLIV_CASSQLLRGQSTDTQYF 1 6350 PGT-178 PGT 0.65 1480 PGT-178 140 6210 2 HomoSapiens PGT LLAGIGTVPI Naive T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*02:01 B2M MHCI -8823 chip0423_205717 9.62 11.6 Chip2 T1D_5 T1D TGTGCAGCAACGGAAACCTCCTACGACAAGGTGATATTT CAATETSYDKVIF TRAV13-1*01 TRAJ50*01 41.0 2646.0 CAATETSYDKVIF_ 13 4385 BZLF1-190-197 EBV 0.43 2156 NEG 130 4255 9 EBV BZLF1 RAKFKQLL effector memory T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-B*08:01 B2M MHCI -8824 chip0423_617098 9.01 8.24 Chip2 T1D_4 T1D TGTGCTGTGAGTGATGGAGAAGGAGCCCAGCAGCTGGTATTT CAVSDGEGAQQLVF TRAV8-6*01 TRAJ54*01 80.0 3109.0 TGTGCCAGCAGCTTAACGGTTCTGGCAGGTCCAAACACTGAAGCTTTCTTT CASSLTVLAGPNTEAFF TRBV7-3*01 TRBJ1-1*01 48.0 1361.0 CAVSDGEGAQQLVF_CASSLTVLAGPNTEAFF 3 5539 BZLF1-190-197 EBV 0.96 2156 BZLF1-190-197 164 5375 8 EBV BZLF1 RAKFKQLL effector memory T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-B*08:01 B2M MHCI -8825 chip0423_567299 -1.16 10.79 Chip2 T1D_5 T1D TGTGCTCTATTTCCGAATGTCTTCAACAAATTTTACTTT CALFPNVFNKFYF TRAV16*01 TRAJ21*01 1.0 22.0 TGTGCCAGCAGTCCAAGCGGGGTCCGAGGCACCGGGGAGCTGTTTTTT CASSPSGVRGTGELFF TRBV6-2*01,TRBV6-3*01 TRBJ2-2*01 22.0 1142.0 CALFPNVFNKFYF_CASSPSGVRGTGELFF 1 5265 Nef13-20 HIV 0.5 19 NEG 127 5138 3 HIV-1 Nef WPTVRERM Naive T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-B*08:01 B2M MHCI -8826 chip0423_504907 11.34 11.9 Chip2 T1D_5 T1D TGTGCCAGCTGTCAGACGGAGGAGTCGGAAGGCTACACCTTC CASCQTEESEGYTF TRBV12-3*01,TRBV12-4*01 TRBJ1-2*01 42.0 2288.0 _CASCQTEESEGYTF 1 2787 BZLF1-190-197 EBV 0.46 2156 NEG 127 2660 11 EBV BZLF1 RAKFKQLL effector T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-B*08:01 B2M MHCI -8827 chip0423_247928 5.46 9.88 Chip2 T1D_4 T1D TGTGCCAGCAGTTACTCAAGTACAGGGGAGTACTTC CASSYSSTGEYF TRBV6-2*01,TRBV6-3*01 TRBJ2-7*01 41.0 1749.0 _CASSYSSTGEYF 32 7276 EBV-LMP1-1 EBV 0.67 237 NEG 157 7119 6 EBV LMP1 YLLEMLWRL central memory T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*02:01 B2M MHCI -8828 chip0423_214157 -3.4 8.84 Chip2 T1D_4 T1D TGTGCAATGAGCCCCACAGGAGGAAGCTACATACCTACATTT CAMSPTGGSYIPTF TRAV12-3*01 TRAJ6*01 68.0 4021.0 TGCAGCGCTAGAGATTATCAGGACAGGGGATCCGGGGAGCTGTTTTTT CSARDYQDRGSGELFF TRBV20-1*01 TRBJ2-2*01 26.0 1290.0 CAMSPTGGSYIPTF_CSARDYQDRGSGELFF 1 5945 ZNT8-VTD-9 ZNT8 0.8 65 ZNT8-VTD-9 113 5832 2 HomoSapiens ZNT8 VTDAAHLLI Naive T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*01:01 B2M MHCI -8829 chip0423_553666 -0.76 10.39 Chip2 T1D_4 T1D TGTGCAGAAGTATCACATGGGAACAACAGACTCGCTTTT CAEVSHGNNRLAF TRAV13-1*01 TRAJ7*01 2.0 124.0 TGTGCCAGCAGCCCCCCATTCCCAACTAATGAAAAACTGTTTTTT CASSPPFPTNEKLFF TRAV24*01 TRAJ5*01 2.0 6.0 0.4 TGTGCCAGCAGCCCCCCATTCACAACTAATGAAAAACTGTTTTTT CASSPPFTTNEKLFF TRBV28*01 TRBJ1-4*01 47.0 1953.0 CAEVSHGNNRLAF_CASSPPFTTNEKLFF 1 7082 PGT-178 PGT 0.63 1480 PGT-178 128 6954 3 HomoSapiens PGT LLAGIGTVPI Naive T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*02:01 B2M MHCI -8830 chip0423_300722 5.13 11.49 Chip2 T1D_4 T1D TGCGCCAGCAGCCAGGCAGGGGGAACTGAAGCTTTCTTT CASSQAGGTEAFF TRAV36/DV7*01 TRAJ40*01 3.0 6.0 TGTGCAGCGCCTGAAACCTCCCACGACAAGGTGATATTT CAAPETSHDKVIF TRAV13-1*01 TRAJ50*01 2.0 327.0 0.33 TGCGCCAGCAGCCAGGCCGGGGGAACTGAAGCTTTCTTT CASSQAGGTEAFF TRBV4-3*01 TRBJ1-1*01 37.0 1776.0 CASSQAGGTEAFF_CASSQAGGTEAFF 1 4882 HCVNS3-1073-1081 HCV 0.44 36 NEG 156 4726 6 HCV NS3 CINGVCWTV central memory T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*02:01 B2M MHCI -8831 chip0423_570282 -0.6 9.94 Chip2 T1D_6 T1D TGACCTGTTAGGGAATATTTCCACGGGCGGTGGAAACAAACTCACCTTT *PVREYFH??gGGGNKLTF TRAV8-3*01,TRAV8-4*01 TRAJ10*01 5.0 59.0 TGTGCCAGCAGCCTCCCCAGTGAAATAATTCAAATGAACACTGAAGCTTTCTTT CASSLPSEIIQMNTEAFF TRBV6-4*01 TRBJ1-1*01 25.0 369.0 *PVREYFH??gGGGNKLTF_CASSLPSEIIQMNTEAFF 1 7302 PTPRN-482-490 PTPRN 0.83 10 PTPRN-482-490 160 7142 3 HomoSapiens PTPRN SLAAGVKLL Naive T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*02:01 B2M MHCI -8832 chip0423_393465 12.68 12.81 Chip2 T1D_5 T1D TGTGCAGCAGCGGAAACCTCCTACGACAAGGTGATATTT CAAAETSYDKVIF TRAV13-1*01 TRAJ50*01 20.0 2031.0 CAAAETSYDKVIF_ 32 3646 BZLF1-190-197 EBV 0.8 2156 NEG 133 3513 11 EBV BZLF1 RAKFKQLL effector T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-B*08:01 B2M MHCI -8833 chip0423_439408 14.69 10.7 Chip2 T1D_5 T1D CGTGCTCCCCCCCTCCCGGAGGCAGGAAGGGCCATCTCCTCTTT RAPPLPEg?cRKGHLLF TRAV35*01 TRAJ42*01 3.0 222.0 TGTGCCAGCAGCTTGCTCGGGGAGGAAGATCAGCCCCAGCATTTT CASSLLGEEDQPQHF TRBV7-9*01 TRBJ1-5*01 2.0 29.0 RAPPLPEg?cRKGHLLF_CASSLLGEEDQPQHF 1 5012 BZLF1-190-197 EBV 0.5 2156 NEG 152 4860 12 EBV BZLF1 RAKFKQLL effector T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-B*08:01 B2M MHCI -8834 chip0423_823308 13.38 6.97 Chip2 T1D_5 T1D TGTGCCAGCAGCTTCGTAGCCAAGATAAATTCACCCCTCCACTTT CASSFVAKINSPLHF TRAV20*01,TRAV36/DV7*01 TRAJ11*01 2.0 4.0 TGTGCCAGCAGCTTCGTAGACAAGATAAATTCACCCCTCCACTTT CASSFVDKINSPLHF TRBV7-9*01 TRBJ1-6*01 24.0 1046.0 CASSFVAKINSPLHF_CASSFVDKINSPLHF 1 3885 BZLF1-190-197 EBV 0.85 2156 NEG 156 3729 10 EBV BZLF1 RAKFKQLL effector memory T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-B*08:01 B2M MHCI -8835 chip0423_600764 11.22 8.19 Chip2 T1D_5 T1D TGTGCAGCTCTCGAAACCTCCTACGACAAGGTGATATTT CAALETSYDKVIF TRAV13-1*01 TRAJ50*01 21.0 2033.0 TGTGCCAGCAGTCCCGACGGATCCACCGGGGAGCTGTTTTTT CASSPDGSTGELFF TRBV12-3*01,TRBV12-4*01 TRBJ2-2*01 58.0 3266.0 CAALETSYDKVIF_CASSPDGSTGELFF 14 6946 BZLF1-190-197 EBV 0.5 2156 NEG 140 6806 10 EBV BZLF1 RAKFKQLL effector memory T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-B*08:01 B2M MHCI -8836 chip0423_600297 10.65 7.4 Chip2 healthy_3 healthy TGCAGTGCCGATTCCTACCGGGACATTGATAACTATGGCTACACCTTC CSADSYRDIDNYGYTF TRBV20-1*01 TRBJ1-2*01 22.0 1251.0 _CSADSYRDIDNYGYTF 8 4139 NP44-52 FLU 0.93 474 NP44-52 130 4009 10 InfluenzaA NP CTELKLSDY effector memory T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*01:01 B2M MHCI -8837 chip0423_539591 5.57 11.77 Chip2 T1D_4 T1D TGTGCCAGCAGCTTAGCGCAGGGGGGTGAGCAGTTCTTC CASSLAQGGEQFF TRBV7-9*01 TRBJ2-1*01 8.0 955.0 _CASSLAQGGEQFF 1 4534 MART1-ALA MART1 0.4 269 MART1-ALA 132 4402 7 HomoSapiens MART1 ALAGIGILTV transitional T cells between effector and memory populations PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*02:01 B2M MHCI -8838 chip0423_656836 13.82 9.92 Chip2 T1D_4 T1D TGTGCCAGCAGCTTAGCGGTCGGAGAAGGGCCCCAGCATTTT CASSLAVGEGPQHF TRBV7-9*01 TRBJ1-5*01 2.0 51.0 _CASSLAVGEGPQHF 113 3314 BZLF1-190-197 EBV 0.95 2156 BZLF1-190-197 140 3174 12 EBV BZLF1 RAKFKQLL effector T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-B*08:01 B2M MHCI -8839 chip0423_222267 5.54 13.09 Chip2 T1D_4 T1D TGTGCAGTAACTTATGGAGGAAGCCAAGGAAATCTCATCTTT CAVTYGGSQGNLIF TRAV25*01 TRAJ42*01 32.0 2165.0 TGTGCCAGTAGTATGAGGTCAACCGGGGAGCTGTTTTTT CASSMRSTGELFF TRBV19*01 TRBJ2-2*01 9.0 502.0 CAVTYGGSQGNLIF_CASSMRSTGELFF 1 5586 M1 FLU 0.89 1250 M1 145 5441 7 InfluenzaA M1 GILGFVFTL transitional T cells between effector and memory populations PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*02:01 B2M MHCI -8840 chip0423_218901 6.15 12.18 Chip2 healthy_3 healthy TGTGTGGTGAACGGGGAAAATGCCAGACTCATGTTT CVVNGENARLMF TRAV12-1*01 TRAJ31*01 21.0 1992.0 TGTGCCAGCAGTGAAATGTGGGGAGCACCCCTCCACTTT CASSEMWGAPLHF TRBV2*01 TRBJ1-6*01 41.0 2500.0 CVVNGENARLMF_CASSEMWGAPLHF 12 7409 NP44-52 FLU 0.74 474 NP44-52 128 7281 7 InfluenzaA NP CTELKLSDY transitional T cells between effector and memory populations PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*01:01 B2M MHCI -8841 chip0423_191954 -1.76 7.47 Chip2 healthy_3 healthy TGTGCCGTGAACGAAGGAGGAGGTGCTGACGGACTCACCTTT CAVNEGGGADGLTF TRAV12-2*01 TRAJ45*01 28.0 1987.0 CAVNEGGGADGLTF_ 1 7751 PGT-178 PGT 0.8 1480 PGT-178 119 7632 3 HomoSapiens PGT LLAGIGTVPI Naive T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*02:01 B2M MHCI -8842 chip0423_882153 -4.36 8.52 Chip2 healthy_3 healthy TGTGCCCTGAATTCTGGGGGTTACCAGAAAGTTACCTTT CALNSGGYQKVTF TRAV12-2*01 TRAJ13*01 1.0 26.0 TGTGCCAGCAGTTTTGGACAGGGAAGCGAGCAGTACTTC CASSFGQGSEQYF TRBV6-5*01 TRBJ2-7*01 20.0 1082.0 CALNSGGYQKVTF_CASSFGQGSEQYF 1 5468 PGT-178 PGT 0.48 1480 NEG 121 5347 2 HomoSapiens PGT LLAGIGTVPI Naive T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*02:01 B2M MHCI -8843 chip0423_689435 6.55 12.33 Chip2 healthy_3 healthy TGTGCCGCAAGCGGAGACTACAAGCTCAGCTTC CAASGDYKLSF TRAV13-1*01 TRAJ20*01 11.0 1514.0 TGTGCCAGCAGCCCAAAGACAGGAGCAGGACTAGCGGGTGATGAGCAGTTCTTC CASSPKTGAGLAGDEQFF TRBV11-1*01 TRBJ2-1*01 1.0 34.0 CAASGDYKLSF_CASSPKTGAGLAGDEQFF 2 6528 NP44-52 FLU 0.81 474 NP44-52 127 6401 7 InfluenzaA NP CTELKLSDY transitional T cells between effector and memory populations PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*01:01 B2M MHCI -8844 chip0423_568370 10.06 7.09 Chip2 T1D_5 T1D TGTGCAGCAAGCGAAACCTCCTACGACAAGGTGATATTT CAASETSYDKVIF TRAV13-1*01 TRAJ50*01 17.0 2032.0 TGTGCCAGCAGCTCACTGGGGGAAAGAGGTTCTGAAGCTTTCTTT CASSSLGERGSEAFF TRBV7-9*01 TRBJ1-1*01 48.0 1761.0 CAASETSYDKVIF_CASSSLGERGSEAFF 1 5021 BZLF1-190-197 EBV 0.8 2156 NEG 153 4868 10 EBV BZLF1 RAKFKQLL effector memory T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-B*08:01 B2M MHCI -8845 chip0423_308463 -1.96 8.5 Chip2 T1D_4 T1D TGTGCAATGAGTATATCTAACTTTGGAAATGAGAAATTAACCTTT CAMSISNFGNEKLTF TRAV12-3*01 TRAJ48*01 67.0 2037.0 TGTGCCGTGATTAAATTATGGAGGAAGCCAAGGAAATCTCATCTTT CAVIKLWag??gaSQGNLIF TRAV12-2*01 TRAJ42*01 39.0 1345.0 0.27 CAMSISNFGNEKLTF_ 13 6778 PGT-178 PGT 0.76 1480 NEG 148 6630 4 HomoSapiens PGT LLAGIGTVPI Naive T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*02:01 B2M MHCI -8846 chip0423_883534 5.87 13.44 Chip2 healthy_3 healthy _ 6746 5164 NP44-52 FLU 0.82 474 NP44-52 121 5043 7 InfluenzaA NP CTELKLSDY transitional T cells between effector and memory populations PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*01:01 B2M MHCI -8847 chip0423_78169 14.99 9.01 Chip2 T1D_6 T1D TGTGCCAGCAGCTTGGGACAGGCCTACGAGCAGTACTTC CASSLGQAYEQYF TRBV7-8*01 TRBJ2-7*01 1.0 27.0 _CASSLGQAYEQYF 175 4076 EBNA3A-193-201 EBV 0.56 1022 EBNA3A-193-201 158 3918 12 EBV EBNA3A FLRGRAYGL effector T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-B*08:01 B2M MHCI -8848 chip0423_528018 -3.94 7.92 Chip2 T1D_4 T1D TGTGCTCTGATTTTTACTCAGGGCGGATCTGAAAAGCTGGTCTTT CALIFTQGGSEKLVF TRAV19*01 TRAJ57*01 23.0 1744.0 TGTGCTCTGAGGACCGGTAACCAGTTCTATTTT CALRTGNQFYF TRAV9-2*01 TRAJ49*01 18.0 2085.0 0.38 TGTGCCAGCAGCTTAGGGGAGGGACTGCGCTACACCTTC CASSLGEGLRYTF TRBV7-9*01 TRBJ1-2*01 103.0 6043.0 CALIFTQGGSEKLVF_CASSLGEGLRYTF 1 7080 NP140-148 FLU 0.67 102 NEG 132 6948 2 InfluenzaA NP HSNLNDATY Naive T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*01:01 B2M MHCI -8849 chip0423_452118 9.06 9.15 Chip2 healthy_4 healthy TATGCCAGTAGTATGAATTTGGGAGGAAGCCAGCCCCAGCATTTT YASSMNLGGSQPQHF TRBV19*01 TRBJ1-5*01 33.0 1143.0 _YASSMNLGGSQPQHF 1 5513 EBV-BRLF1 EBV 1.0 1264 EBV-BRLF1 152 5361 8 EBV BRLF1 YVLDHLIVV effector memory T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*02:01 B2M MHCI -8850 chip0423_189633 -3.32 9.53 Chip2 T1D_6 T1D TGCAGCGTTGAAGGGTTAATTGGGGTCACTGAAGCTTTCTTT CSVEGLIGVTEAFF TRBV29-1*01 TRBJ1-1*01 88.0 4514.0 _CSVEGLIGVTEAFF 1 6629 ZNT8-115-123 ZNT8 0.48 74 NEG 126 6503 2 HomoSapiens ZNT8 LLSLFSLWL Naive T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*02:01 B2M MHCI -8851 chip0423_670833 4.98 9.28 Chip2 T1D_6 T1D TGTGCTTCTCGAGGGGAATATGGAAACAAACTGGTCTTT CASRGEYGNKLVF TRAV38-1*01 TRAJ47*01 1.0 19.0 TGTGCCAGTAGTCCGATGGACAGGGAAAGGGAAGCTTTCTTT CASSPMDREREAFF TRBV19*01 TRBJ1-1*01 8.0 254.0 CASRGEYGNKLVF_CASSPMDREREAFF 1 4787 IAPP-STN-9 IAPP 0.61 48 NEG 130 4657 6 HomoSapiens IAPP STNVGSNTY central memory T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*01:01 B2M MHCI -8852 chip0423_356161 -2.17 8.8 Chip2 T1D_6 T1D TGTGCCAGTCGGACAGAGATGGGCGGGGAGCTGTTTTTT CASRTEMGGELFF TRBV19*01 TRBJ2-2*01 14.0 957.0 _CASRTEMGGELFF 1 5728 ZNT8-16-24 ZNT8 0.45 39 NEG 146 5582 3 HomoSapiens ZNT8 KMYAFTLES Naive T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*02:01 B2M MHCI -8853 chip0423_768593 11.42 12.47 Chip2 T1D_5 T1D TGTGCCAGCAGCTCCTTAAGCGGGGGGGCAGGAAATGAGCAGTTCTTC CASSSLSGGAGNEQFF TRBV7-9*01 TRBJ2-1*01 57.0 3042.0 _CASSSLSGGAGNEQFF 33 1907 BZLF1-190-197 EBV 0.5 2156 NEG 158 1749 11 EBV BZLF1 RAKFKQLL effector T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-B*08:01 B2M MHCI -8854 chip0423_292093 6.06 12.98 Chip2 T1D_4 T1D TGTGCAGGGTCGAATGGAGGAAGCCAAGGAAATCTCGTCTTT CAGSNGGSQGNLVF TRAV25*01 TRAJ42*01 18.0 1045.0 TGTGCCAGTAGTATGAGGAGCACCGGGGAGCTGTTTTTT CASSMRSTGELFF TRBV19*01 TRBJ2-2*01 31.0 1848.0 CAGSNGGSQGNLVF_CASSMRSTGELFF 1 5541 M1 FLU 0.75 1250 NEG 148 5393 7 InfluenzaA M1 GILGFVFTL transitional T cells between effector and memory populations PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*02:01 B2M MHCI -8855 chip0423_182601 11.25 11.66 Chip2 T1D_4 T1D TGTGCTATCAATTCAGGAAACACACCTCTTGTCTTT CAINSGNTPLVF TRAV1-2*01 TRAJ29*01 25.0 2026.0 TGTGCCCGCAGCCCCGTCGTCAACCCGGGGGATGGCTACACCTTC CARSPVVNPGDGYTF TRBV14*01 TRBJ1-2*01 2.0 106.0 CAINSGNTPLVF_CARSPVVNPGDGYTF 1 1872 EBNA3A-158-166 EBV 0.74 444 NEG 142 1730 9 EBV EBNA3A QAKWRLQTL effector memory T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-B*08:01 B2M MHCI -8856 chip0423_33811 -4.09 7.89 Chip2 T1D_4 T1D TGTGCCTCCCGGAATTCAGGAAACACACCTCTTGTCTTT CASRNSGNTPLVF TRAV24*01 TRAJ29*01 33.0 2492.0 TGTGCCAGCAGCCAAGATTTTTTAGACGGACATTCTGAAGCTTTCTTT CASSQDFLDGHSEAFF TRBV4-2*01 TRBJ1-1*01 120.0 3218.0 CASRNSGNTPLVF_CASSQDFLDGHSEAFF 1 6881 PGT-178 PGT 0.47 1480 PGT-178 151 6730 2 HomoSapiens PGT LLAGIGTVPI Naive T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*02:01 B2M MHCI -8857 chip0423_753643 -4.03 10.32 Chip2 T1D_6 T1D _ 6746 5193 INSDRIP-1-9 INS 0.62 8 NEG 133 5060 2 HomoSapiens INSDRIP MLYQHLLPL Naive T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*02:01 B2M MHCI -8858 chip0423_150905 -0.73 7.5 Chip2 T1D_5 T1D _ 6746 7710 INS-MAL-8 INS 0.59 38 INS-MAL-8 150 7560 3 HomoSapiens INS MALWMRLL Naive T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-B*08:01 B2M MHCI -8859 chip0423_870204 10.52 13.82 Chip2 healthy_3 healthy TGTGTGGTTCATTATAACACCGACAAGCTCATCTTT CVVHYNTDKLIF TRAV12-1*01 TRAJ34*01 27.0 2033.0 CVVHYNTDKLIF_ 1 2297 NP44-52 FLU 0.8 474 NP44-52 135 2162 11 InfluenzaA NP CTELKLSDY effector T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*01:01 B2M MHCI -8860 chip0423_257974 10.88 10.07 Chip2 T1D_4 T1D TGTGCCAGCAGCCAAGTCAACAACCCGGGGGATGGCTACACCTTC CASSQVNNPGDGYTF TRBV14*01 TRBJ1-2*01 45.0 700.0 _CASSQVNNPGDGYTF 94 3518 EBNA3A-158-166 EBV 0.58 444 NEG 144 3374 9 EBV EBNA3A QAKWRLQTL effector memory T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-B*08:01 B2M MHCI -8861 chip0423_50569 -4.16 8.75 Chip2 T1D_6 T1D TGTGCACTTATCTCGGGTAGCGACTATAAACTGACATTT CALISGSDYKLTF TRAV29/DV5*01 TRAJ53*01 20.0 1484.0 TGTGCCAGCAGCACGTTACAGGGGACAAACACTGAAGCTTTCTTT CASSTLQGTNTEAFF TRBV7-9*01 TRBJ1-1*01 2.0 17.0 CALISGSDYKLTF_CASSTLQGTNTEAFF 1 5327 ZNT8-PTE-9 ZNT8 0.67 18 NEG 134 5193 2 HomoSapiens ZNT8 PTEKGANEY Naive T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*01:01 B2M MHCI -8862 chip0423_541613 11.84 10.54 Chip2 T1D_5 T1D TGTGCAGAGATGGAAACCTCCTACGACAAGGTGATATTT CAEMETSYDKVIF TRAV13-2*01 TRAJ50*01 23.0 2279.0 TGTGCCAGCAGCTCCTTAAGCGGGGGGGCAGGAAATGAGCAGTTCTTC CASSSLSGGAGNEQFF TRBV7-9*01 TRBJ2-1*01 13.0 1005.0 CAEMETSYDKVIF_CASSSLSGGAGNEQFF 27 7031 BZLF1-190-197 EBV 0.56 2156 BZLF1-190-197 144 6887 9 EBV BZLF1 RAKFKQLL effector memory T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-B*08:01 B2M MHCI -8863 chip0423_157562 8.51 11.36 Chip2 T1D_6 T1D TGTGCCAGCAGTTACCAGGGGGGCAACTATGGCTACACCTTC CASSYQGGNYGYTF TRBV6-5*01 TRBJ1-2*01 7.0 217.0 _CASSYQGGNYGYTF 4 5968 EBV-LMP2-FLY EBV 0.67 355 NEG 143 5825 7 EBV LMP2 FLYALALLL transitional T cells between effector and memory populations PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*02:01 B2M MHCI -8864 chip0423_93228 12.78 6.61 Chip2 T1D_5 T1D TGTGCCGTTCGCCCCCTAGGGGGAAACACACCTCTTGTCTTT CAVRPLGGNTPLVF TRAV12-2*01 TRAJ29*01 21.0 1782.0 TGTGCTAGTGGTCCGGACATATCCTACTCCTACGAGCAGTACTTC CASGPDISYSYEQYF TRBV12-5*01 TRBJ2-7*01 49.0 3248.0 CAVRPLGGNTPLVF_CASGPDISYSYEQYF 3 3151 BZLF1-190-197 EBV 0.73 2156 NEG 154 2997 10 EBV BZLF1 RAKFKQLL effector memory T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-B*08:01 B2M MHCI -8865 chip0423_840428 16.14 11.72 Chip2 healthy_3 healthy TGTGCCGTGGACACCATCGACAGAGGCTCAACCCTGGGGAGGCTATACTTT CAVDTIDRGSTLGRLYF TRAV39*01 TRAJ18*01 51.0 1992.0 TGCGCCAGCAGCCAAGAGGGACAGGGTGCCGGGGAGCTGTTTTTT CASSQEGQGAGELFF TRBV4-1*01 TRBJ2-2*01 16.0 572.0 CAVDTIDRGSTLGRLYF_CASSQEGQGAGELFF 1 2998 M1 FLU 0.4 1250 M1 150 2848 12 InfluenzaA M1 GILGFVFTL effector T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*02:01 B2M MHCI -8866 chip0423_839865 10.68 11.72 Chip2 T1D_4 T1D TGTGCCAGCAGCTTAGCGGTCGGAGAAGGGCCCCAGCATTTT CASSLAVGEGPQHF TRBV7-9*01 TRBJ1-5*01 21.0 903.0 _CASSLAVGEGPQHF 113 4029 BZLF1-190-197 EBV 0.9 2156 BZLF1-190-197 121 3908 9 EBV BZLF1 RAKFKQLL effector memory T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-B*08:01 B2M MHCI -8867 chip0423_687949 5.97 12.63 Chip2 T1D_4 T1D TGTGCTGTGCCTGGCGGTAACCAGTTCTCTTTT CAVPGGNQFSF TRAV3*01 TRAJ49*01 29.0 3936.0 TGTGCCAGTAGTGTATTTGCGACAGGGGGCAGTGGCTACACCTTC CASSVFATGGSGYTF TRBV19*01 TRBJ1-2*01 3.0 109.0 CAVPGGNQFSF_CASSVFATGGSGYTF 1 5591 M1 FLU 0.66 1250 M1 148 5443 7 InfluenzaA M1 GILGFVFTL transitional T cells between effector and memory populations PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*02:01 B2M MHCI -8868 chip0423_845795 5.85 12.72 Chip2 T1D_4 T1D TGTGCTGTGAGAGACATAAGCTTTCAGAAACTTGTATTT CAVRDISFQKLVF TRAV3*01 TRAJ8*01 26.0 1202.0 TGTGCCAGTAGTTCGACAATCGGGGCCACTGAAGCTTTCTTT CASSSTIGATEAFF TRBV19*01 TRBJ1-1*01 25.0 1332.0 CAVRDISFQKLVF_CASSSTIGATEAFF 1 7590 M1 FLU 0.5 1250 NEG 145 7445 7 InfluenzaA M1 GILGFVFTL transitional T cells between effector and memory populations PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*02:01 B2M MHCI -8869 chip0423_786961 -2.68 12.58 Chip2 healthy_3 healthy TGTGCCAGCAGTTTCGACTTAAGCTCCTACAATGAGCAGTTCTTC CASSFDLSSYNEQFF TRBV27*01 TRBJ2-1*01 43.0 2592.0 _CASSFDLSSYNEQFF 1 4179 PGT-178 PGT 0.82 1480 NEG 125 4054 1 HomoSapiens PGT LLAGIGTVPI Naive T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*02:01 B2M MHCI -8870 chip0423_354165 -1.35 8.29 Chip2 healthy_4 healthy TGTGCAATCACTTATTCCAACTTTGCAACTGCGAAATTTACCTTT CAITYSNFATAKFTF TRAV12-3*01 TRAJ48*01 11.0 437.0 TGCAGTGCTAGAGCCAAGTCAGGTCCCTCTTATAATGAGCAGTTCTTC CSARAKSGPSYNEQFF TRBV20-1*01 TRBJ2-1*01 5.0 214.0 CAITYSNFATAKFTF_CSARAKSGPSYNEQFF 1 5444 PGT-178 PGT 0.93 1480 NEG 126 5318 4 HomoSapiens PGT LLAGIGTVPI Naive T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*02:01 B2M MHCI -8871 chip0423_122630 11.05 6.99 Chip2 T1D_5 T1D TGTGCCAGCAGTTTTACAGGACAAGTGAACACTGAAGCTTTCTTT CASSFTGQVNTEAFF TRAV9-1*01 TRAJ40*01 2.0 7.0 TGTGCCAGCAGTTTTACAGGACAAGTGAACACTGAAGCTTTCTTT CASSFTGQVNTEAFF TRBV12-3*01,TRBV12-4*01 TRBJ1-1*01 40.0 1521.0 CASSFTGQVNTEAFF_CASSFTGQVNTEAFF 2 5535 BZLF1-190-197 EBV 0.41 2156 NEG 133 5402 10 EBV BZLF1 RAKFKQLL effector memory T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-B*08:01 B2M MHCI -8872 chip0423_31710 11.75 7.08 Chip2 T1D_5 T1D GGGGCATTTTCAGCTGGCCAGAAGCTGCTCTTT GAFSAGQKLLF TRAV25*01 TRAJ16*01 1.0 18.0 TGTGCCCGCCGCCTATTGGGCTCGGTGGACACTGAAGCTTTCTTT CARRLLGSVDTEAFF TRBV7-9*01 TRBJ1-1*01 2.0 23.0 GAFSAGQKLLF_CARRLLGSVDTEAFF 1 4616 BZLF1-190-197 EBV 0.74 2156 BZLF1-190-197 141 4475 10 EBV BZLF1 RAKFKQLL effector memory T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-B*08:01 B2M MHCI -8873 chip0423_740508 -0.86 7.6 Chip2 healthy_3 healthy _ 6746 7937 IAPP-STN-9 IAPP 0.73 48 IAPP-STN-9 138 7799 3 HomoSapiens IAPP STNVGSNTY Naive T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*01:01 B2M MHCI -8874 chip0423_394297 -1.38 9.81 Chip2 T1D_6 T1D TGTGCCAGCAGTTACGGGGCAGGCTCCTACGAGCAGTACTTC CASSYGAGSYEQYF TRBV6-5*01 TRBJ2-7*01 49.0 1665.0 _CASSYGAGSYEQYF 1 7150 PTPRN-HAR-8 PTPRN 0.78 13 NEG 140 7010 3 HomoSapiens PTPRN HARIKLKV Naive T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-B*08:01 B2M MHCI -8875 chip0423_114906 -1.59 10.03 Chip2 T1D_5 T1D TGTGCAATGAGAGAGGGCGGGGATTCCGGGTATGCACTCAACTTC CAMREGGDSGYALNF TRAV14/DV4*01 TRAJ41*01 1.0 51.0 TGTGCCAGCAGCTTAGGCGGGGGGCCTACCACAGATACGCAGTATTTT CASSLGGGPTTDTQYF TRBV7-9*01 TRBJ2-3*01 28.0 1337.0 CAMREGGDSGYALNF_CASSLGGGPTTDTQYF 1 5113 NP140-148 FLU 0.83 102 NEG 118 4995 3 InfluenzaA NP HSNLNDATY Naive T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*01:01 B2M MHCI -8876 chip0423_271309 8.44 9.22 Chip2 healthy_4 healthy TGTGCCAGCAGCCAGACATTTCCGAACACCGGGGAGCTGTTTTTT CASSQTFPNTGELFF TRBV3-1*01 TRBJ2-2*01 31.0 1506.0 _CASSQTFPNTGELFF 12 5852 BZLF1-190-197 EBV 0.73 2156 NEG 153 5699 8 EBV BZLF1 RAKFKQLL effector memory T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-B*08:01 B2M MHCI -8877 chip0423_261386 13.68 7.97 Chip2 T1D_4 T1D TGTGCCAGCAGCTTAGCGGTCGGAGAAGGGCCCCAGCATTTT CASSLAVGEGPQHF TRBV7-9*01 TRBJ1-5*01 26.0 1426.0 _CASSLAVGEGPQHF 113 3778 BZLF1-190-197 EBV 0.92 2156 BZLF1-190-197 138 3640 10 EBV BZLF1 RAKFKQLL effector memory T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-B*08:01 B2M MHCI -8878 chip0423_21743 10.11 10.42 Chip2 T1D_4 T1D TGCATCGTCAGAGAGGGAGGAGGTGCTGACGGACTCACCTTT CIVREGGGADGLTF TRAV26-1*01 TRAJ45*01 1.0 34.0 TGTGCCAGCAGCTTAGCGGTCGGAGAAGGGCCCCAGCATTTT CASSLAVGEGPQHF TRBV7-9*01 TRBJ1-5*01 35.0 1791.0 CIVREGGGADGLTF_CASSLAVGEGPQHF 68 4452 BZLF1-190-197 EBV 0.87 2156 BZLF1-190-197 144 4308 9 EBV BZLF1 RAKFKQLL effector memory T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-B*08:01 B2M MHCI -8879 chip0423_415246 -1.69 10.34 Chip2 T1D_4 T1D TGTGCAATGAGCCCCTCTAACTTTGGAAATGAGAAATTAACCTTT CAMSPSNFGNEKLTF TRAV12-3*01 TRAJ48*01 66.0 2634.0 TGTGCCAGCAGCCAAACAATTGAAGCGAGCGAGCAGTACTTC CASSQTIEASEQYF TRBV3-1*01 TRBJ2-7*01 28.0 1539.0 CAMSPSNFGNEKLTF_CASSQTIEASEQYF 1 6429 PGT-178 PGT 0.54 1480 NEG 131 6298 3 HomoSapiens PGT LLAGIGTVPI Naive T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*02:01 B2M MHCI -8880 chip0423_277066 0.19 8.72 Chip2 T1D_6 T1D TGTGCCGTGACCCCTACACGAAATCACATGCGCTTT CAVTPTRNHMRF TRAV12-2*01 TRAJ43*01 10.0 812.0 TGCGCCAGCAGCCAAGCGACCACCGCCGGGGAGCTGTTTTTT CASSQATTAGELFF TRBV4-1*01 TRBJ2-2*01 23.0 1129.0 CAVTPTRNHMRF_CASSQATTAGELFF 1 6928 PGT-178 PGT 0.57 1480 PGT-178 136 6792 4 HomoSapiens PGT LLAGIGTVPI Naive T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*02:01 B2M MHCI -8881 chip0423_813744 5.56 11.78 Chip2 T1D_6 T1D TGCAGTGCTCCGCCGGTCCCCGGTAATGAAAAACTGTTTTTT CSAPPVPGNEKLFF TRBV20-1*01 TRBJ1-4*01 33.0 1519.0 _CSAPPVPGNEKLFF 1 6146 ROTA-VP6 ROTA 1.0 47 ROTA-VP6 125 6021 7 RotavirusA VP6 TLLANVTAV transitional T cells between effector and memory populations PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*02:01 B2M MHCI -8882 chip0423_714147 0.01 4.11 Chip2 T1D_5 T1D TGTGCAGTCAGAGATGGCCAGTAGCTGCTCTTT CAVRDGQ*LLF TRAV13-2*01 TRAJ16*01 1.0 334.0 TGTGCCACTAAACCGGACAGGGACAATCAGCCCCAGCATTTT CATKPDRDNQPQHF TRBV10-3*01 TRBJ1-5*01 92.0 3161.0 CAVRDGQ*LLF_CATKPDRDNQPQHF 1 2799 PB1-590-599 FLU 0.58 37 PB1-590-599 144 2655 5 InfluenzaA PB1 LVSDGGPNLY natural killer-like T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*01:01 B2M MHCI -8883 chip0423_367311 11.47 10.99 Chip2 T1D_4 T1D TGCATCCTCCCCCTTGCTGGTGGTACTAGCTATGGAAAGCTGACATTT CILPLAGGTSYGKLTF TRAV26-2*01 TRAJ52*01 56.0 4105.0 TGTGCCAGCAGCTCAGGACAGGCCTACGAGCAGTACTTC CASSSGQAYEQYF TRBV7-8*01 TRBJ2-7*01 13.0 1173.0 CILPLAGGTSYGKLTF_CASSSGQAYEQYF 40 4297 EBNA3A-193-201 EBV 0.78 1022 NEG 143 4154 9 EBV EBNA3A FLRGRAYGL effector memory T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-B*08:01 B2M MHCI -8884 chip0423_269815 9.44 8.33 Chip2 healthy_4 healthy AGTGCCGTGAGTGCCCCCGGGGCTGGGGCAAACGACCTCTTCTTT SAVSAPGAGANDLFF TRAV14/DV4*01 TRAJ36*01 18.0 646.0 TGCGCCAGCAGCCAAGCCCCGGGACAGCGCACCGGGGAGCTGTTTTTT CASSQAPGQRTGELFF TRBV4-1*01 TRBJ2-2*01 15.0 475.0 SAVSAPGAGANDLFF_CASSQAPGQRTGELFF 1 5823 BZLF1-190-197 EBV 0.71 2156 NEG 153 5670 8 EBV BZLF1 RAKFKQLL effector memory T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-B*08:01 B2M MHCI -8885 chip0423_743250 -2.53 8.33 Chip2 T1D_4 T1D TGTGCCCGCAGCTTGGGGCGGTCACCCAACACTGCAGCTCTCTTT CARSLGRSPNTAALF TRBV7-2*01 TRBJ1-1*01 2.0 157.0 _CARSLGRSPNTAALF 1 8261 PGT-178 PGT 0.68 1480 PGT-178 140 8121 2 HomoSapiens PGT LLAGIGTVPI Naive T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*02:01 B2M MHCI -8886 chip0423_378504 -1.53 9.69 Chip2 T1D_5 T1D _ 6746 6322 INS-MAL-8 INS 0.65 38 INS-MAL-8 132 6190 3 HomoSapiens INS MALWMRLL Naive T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-B*08:01 B2M MHCI -8887 chip0423_501311 -2.41 7.48 Chip2 healthy_4 healthy TGTGCCAGCAGTGCTGGCGGGGGGCTCGATCAGCCCCAGCATTTT CASSAGGGLDQPQHF TRBV6-4*01 TRBJ1-5*01 26.0 778.0 _CASSAGGGLDQPQHF 1 6826 GFAP-HLK-8 GFAP 0.9 28 GFAP-HLK-8 140 6686 2 HomoSapiens GFAP HLKRNIVV Naive T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-B*08:01 B2M MHCI -8888 chip0423_488548 13.34 11.23 Chip2 T1D_5 T1D TGTGCGGGGGGAGAAACCTCCTACGACAAGGTGATATTT CAGGETSYDKVIF TRAV13-1*01 TRAJ50*01 1.0 43.0 TGTGCCAGCAGCTCACTAGGGACAGGGGACACTGAAGCTTTCTTT CASSSLGTGDTEAFF TRBV7-9*01 TRBJ1-1*01 47.0 1511.0 CAGGETSYDKVIF_CASSSLGTGDTEAFF 11 2979 BZLF1-190-197 EBV 1.0 2156 NEG 152 2827 9 EBV BZLF1 RAKFKQLL effector memory T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-B*08:01 B2M MHCI -8889 chip0423_233056 -0.98 6.62 Chip2 healthy_3 healthy TGTGCTGTGGTTTTTATGAACACAGGCTTTCAGAAACTTGTATTT CAVVFMNTGFQKLVF TRAV8-3*01 TRAJ8*01 1.0 10.0 TGTGCCAGCAGCTTTGGGACCGCCGAGCAGTACTTC CASSFGTAEQYF TRBV5-8*01 TRBJ2-7*01 6.0 407.0 CAVVFMNTGFQKLVF_CASSFGTAEQYF 1 8570 ZNT8-153-161 ZNT8 0.71 41 NEG 114 8456 3 HomoSapiens ZNT8 VVTGVLVYL Naive T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*02:01 B2M MHCI -8890 chip0423_737139 11.72 12.21 Chip2 T1D_4 T1D TGTGCCAGCAGCCCGGGACCCAACACTGAAGCTTTCTTT CASSPGPNTEAFF TRAV36/DV7*01 TRAJ40*01 4.0 19.0 TGTGCAATGAGCGAGGACGGCTTT CAMSEDGF TRAV12-3*01 TRAJ37*01 3.0 11.0 0.38 TGTGCCAGCAGCCCGGGACCCAACACTGAAGCTTTCTTT CASSPGPNTEAFF TRBV4-2*01 TRBJ1-1*01 93.0 4014.0 CASSPGPNTEAFF_CASSPGPNTEAFF 3 3119 BZLF1-190-197 EBV 0.86 2156 NEG 148 2971 11 EBV BZLF1 RAKFKQLL effector T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-B*08:01 B2M MHCI -8891 chip0423_489247 13.08 7.82 Chip2 T1D_5 T1D TGTGCTTTAATTATGGAGGAAGCCAAGGAAATCTCATCTTT CALIMEga?SQGNLIF TRAV36/DV7*01 TRAJ42*01 1.0 14.0 CALIMEga?SQGNLIF_ 1 2706 BZLF1-190-197 EBV 0.64 2156 NEG 178 2528 10 EBV BZLF1 RAKFKQLL effector memory T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-B*08:01 B2M MHCI -8892 chip0423_310465 -2.49 12.41 Chip2 T1D_6 T1D TGTGCTACTATCATTGAATGGCTCTAGCAACACAGGCAAACTCATCTTT CATIIEWL??tSNTGKLIF TRAV2*01 TRAJ37*01 35.0 1998.0 CATIIEWL??tSNTGKLIF_ 1 4581 EBV-LMP2A EBV 0.5 700 NEG 133 4448 1 EBV LMP2A CLGGLLTMV Naive T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*02:01 B2M MHCI -8893 chip0423_873246 5.14 10.85 Chip2 healthy_3 healthy TGTGCCGCCCTATGCTAATGCAGGCAACATGTTCGCTTTT CAALC*tg??caGNMFAF TRAV24*01 TRAJ39*01 7.0 217.0 TGTGCCAGCAGCCCGAGCCTCTTGTCGGGAACCGGGGAGCTGTTTTTT CASSPSLLSGTGELFF TRBV7-9*01 TRBJ2-2*01 29.0 1482.0 CAALC*tg??caGNMFAF_CASSPSLLSGTGELFF 1 8213 PGT-178 PGT 0.74 1480 NEG 117 8096 6 HomoSapiens PGT LLAGIGTVPI central memory T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*02:01 B2M MHCI -8894 chip0423_753007 8.07 11.56 Chip2 T1D_5 T1D TGTGCCAGCAGCTTGTTAGGCAGTCAGAACACTGAAGCTTTCTTT CASSLLGSQNTEAFF TRAV36/DV7*01 TRAJ40*01 2.0 5.0 TGTGCCAGCAGCTTGTTAGGCAGTCAGAACACTGAAGCTTTCTGT CASSLLGSQNTEAFC TRBV7-9*01 TRBJ1-1*01 50.0 1935.0 CASSLLGSQNTEAFF_CASSLLGSQNTEAFC 1 4269 BZLF1-190-197 EBV 0.53 2156 NEG 152 4117 7 EBV BZLF1 RAKFKQLL transitional T cells between effector and memory populations PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-B*08:01 B2M MHCI -8895 chip0423_392429 12.21 10.68 Chip2 T1D_4 T1D TGTGCTGTGAGTGATGGAGAAGGAGCCCAGAAGCTGGTATTT CAVSDGEGAQKLVF TRAV8-6*01 TRAJ54*01 21.0 690.0 CAVSDGEGAQKLVF_ 12 2988 BZLF1-190-197 EBV 0.67 2156 NEG 155 2833 9 EBV BZLF1 RAKFKQLL effector memory T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-B*08:01 B2M MHCI -8896 chip0423_516032 13.74 11.19 Chip2 healthy_3 healthy TGTGTGGTGAACGGGGAAAATGCCAGACTCATGTTT CVVNGENARLMF TRAV12-1*01 TRAJ31*01 7.0 701.0 CVVNGENARLMF_ 5 3989 NP44-52 FLU 0.95 474 NP44-52 141 3848 7 InfluenzaA NP CTELKLSDY transitional T cells between effector and memory populations PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*01:01 B2M MHCI -8897 chip0423_484055 12.74 11.25 Chip2 T1D_4 T1D TGCATCGTCAGAGAGGGAGGAGGTGCTGACGGACTCACCTTT CIVREGGGADGLTF TRAV26-1*01 TRAJ45*01 55.0 2098.0 TGTGCCAGCAGCTTAGCGGTCGGAGAAGGGCCCCAGCATTTT CASSLAVGEGPQHF TRBV7-9*01 TRBJ1-5*01 73.0 2491.0 CIVREGGGADGLTF_CASSLAVGEGPQHF 68 2896 BZLF1-190-197 EBV 0.93 2156 NEG 155 2741 9 EBV BZLF1 RAKFKQLL effector memory T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-B*08:01 B2M MHCI -8898 chip0423_440030 6.35 14.15 Chip2 healthy_3 healthy TGTGCAGCAAGCGATCAGGCTGCAGGCAACAAGCTAACTTTT CAASDQAAGNKLTF TRAV29/DV5*01 TRAJ17*01 22.0 1174.0 TGTGCCAGCAGTGGGCTAGCGGGAGTTCATAGTTACGAGCAGTACTTC CASSGLAGVHSYEQYF TRBV2*01 TRBJ2-7*01 1.0 12.0 CAASDQAAGNKLTF_CASSGLAGVHSYEQYF 1 5248 PB1-590-599 FLU 0.58 37 PB1-590-599 129 5119 7 InfluenzaA PB1 LVSDGGPNLY transitional T cells between effector and memory populations PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*01:01 B2M MHCI -8899 chip0423_403053 5.97 12.05 Chip2 T1D_6 T1D _ 6746 6478 M1 FLU 0.47 1250 NEG 148 6330 7 InfluenzaA M1 GILGFVFTL transitional T cells between effector and memory populations PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*02:01 B2M MHCI -8900 chip0423_865415 -0.52 8.87 Chip2 healthy_3 healthy TGTGTGGTGACCCTAGGCTTT CVVTLGF TRAV12-1*01 TRAJ34*01 3.0 37.0 TGTGCCAGCAGTCCCGGACTAGCGGAGACGTACCAAGAGACCCAGTACTTC CASSPGLAETYQETQYF TRBV27*01 TRBJ2-5*01 9.0 403.0 CVVTLGF_CASSPGLAETYQETQYF 1 6992 PGT-178 PGT 0.67 1480 NEG 143 6849 4 HomoSapiens PGT LLAGIGTVPI Naive T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*02:01 B2M MHCI -8901 chip0423_185230 13.76 11.77 Chip2 T1D_5 T1D TGTGCAGCGGCGGAAACCTCCTACGACAAGGTGATATTT CAAAETSYDKVIF TRAV13-1*01 TRAJ50*01 19.0 2054.0 TGTGCCAGCCAACTAGCGGGAGGCACCGGGGAGCTGTTTTTT CASQLAGGTGELFF TRBV24-1*01 TRBJ2-2*01 4.0 216.0 CAAAETSYDKVIF_CASQLAGGTGELFF 131 1810 BZLF1-190-197 EBV 0.75 2156 NEG 140 1670 12 EBV BZLF1 RAKFKQLL effector T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-B*08:01 B2M MHCI -8902 chip0423_5453 -4.57 9.69 Chip2 healthy_3 healthy TGTGCCAGTGGGACGGAAGGGGCCAACGTCCTGACTTTC CASGTEGANVLTF TRBV25-1*01 TRBJ2-6*01 46.0 3458.0 _CASGTEGANVLTF 1 5860 PGT-178 PGT 0.68 1480 NEG 122 5738 2 HomoSapiens PGT LLAGIGTVPI Naive T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*02:01 B2M MHCI -8903 chip0423_289683 14.36 8.21 Chip2 T1D_5 T1D TGTGCAGAGATGGAAACCTCCTACGACAAGGTGATATTT CAEMETSYDKVIF TRAV13-2*01 TRAJ50*01 1.0 70.0 TGTGCCAGCAGCTTACTGGGGACGGTCGATAATTCACCCCTCCACTTT CASSLLGTVDNSPLHF TRBV7-9*01 TRBJ1-6*01 54.0 1942.0 CAEMETSYDKVIF_CASSLLGTVDNSPLHF 5 3027 BZLF1-190-197 EBV 0.44 2156 NEG 127 2900 10 EBV BZLF1 RAKFKQLL effector memory T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-B*08:01 B2M MHCI -8904 chip0423_272670 9.0 7.9 Chip2 T1D_5 T1D TGTGCCAGCAGCTTACTCGGGGCAGGCACCGGGGAGCTGTTTTTT CASSLLGAGTGELFF TRBV7-9*01 TRBJ2-2*01 55.0 2226.0 _CASSLLGAGTGELFF 1 6319 BZLF1-190-197 EBV 0.51 2156 BZLF1-190-197 153 6166 8 EBV BZLF1 RAKFKQLL effector memory T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-B*08:01 B2M MHCI -8905 chip0423_120351 -2.8 11.88 Chip2 T1D_5 T1D _ 6746 5112 EBNA3A-158-166 EBV 0.86 444 EBNA3A-158-166 136 4976 1 EBV EBNA3A QAKWRLQTL Naive T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-B*08:01 B2M MHCI -8906 chip0423_71706 13.48 10.2 Chip2 T1D_5 T1D TGTGCAGCAAGGGAAACCTCCTACGACAAGATGATATTT CAARETSYDKMIF TRAV13-1*01 TRAJ50*01 19.0 1142.0 TGTGCCAGCACCAACCTGGGAGGGTTCACAGATACGCAGTATTTT CASTNLGGFTDTQYF TRBV7-9*01 TRBJ2-3*01 28.0 877.0 CAARETSYDKMIF_CASTNLGGFTDTQYF 1 4001 BZLF1-190-197 EBV 0.56 2156 NEG 139 3862 12 EBV BZLF1 RAKFKQLL effector T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-B*08:01 B2M MHCI -8907 chip0423_809860 14.92 12.77 Chip2 T1D_6 T1D TGCATCCTCCCACTTGCTGGTGGTACTAGCTATGGAAAGCTGACATTT CILPLAGGTSYGKLTF TRAV26-2*01 TRAJ52*01 28.0 1428.0 TGTGCCAGCCGCTTGGGACAGGCCTACGAGCAGTACTTC CASRLGQAYEQYF TRBV7-8*01 TRBJ2-7*01 4.0 418.0 CILPLAGGTSYGKLTF_CASRLGQAYEQYF 2 2255 EBNA3A-193-201 EBV 1.0 1022 NEG 155 2100 12 EBV EBNA3A FLRGRAYGL effector T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-B*08:01 B2M MHCI -8908 chip0423_723069 10.69 7.64 Chip2 healthy_4 healthy TGCATCCTTCCCCTAGCTGGTGGTACTAGCTATGGAAAGCTGACATTT CILPLAGGTSYGKLTF TRAV26-2*01 TRAJ52*01 26.0 1030.0 TGTGCCAGCAGCTCCGGACAGGCCTACGAGCAGTACTTC CASSSGQAYEQYF TRBV7-8*01 TRBJ2-7*01 2.0 160.0 CILPLAGGTSYGKLTF_CASSSGQAYEQYF 40 4247 EBNA3A-193-201 EBV 0.94 1022 EBNA3A-193-201 137 4110 6 EBV EBNA3A FLRGRAYGL central memory T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-B*08:01 B2M MHCI -8909 chip0423_632884 -1.55 10.21 Chip2 T1D_5 T1D TGTGCCGTATATCGTGGCGCTGGCTTCGGCCGTTAGCTGATTTGT CAVYRGAGFGR*LIC TRAV12-2*01 TRAJ38*01 12.0 952.0 TGTGCCAGCAGCTTTGAGTCGGGGCGCACTGAAGCTTTCTTT CASSFESGRTEAFF TRBV5-6*01 TRBJ1-1*01 26.0 1336.0 CAVYRGAGFGR*LIC_CASSFESGRTEAFF 1 7960 ZNT8-YAY-8 ZNT8 0.4 54 NEG 157 7803 3 HomoSapiens ZNT8 YAYAKWKL Naive T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-B*08:01 B2M MHCI -8910 chip0423_573012 15.36 9.48 Chip2 T1D_5 T1D TGTGCTGGCAATAACTTTGGAAATGAGAAATTAACCTTT CAGNNFGNEKLTF TRAV12-3*01 TRAJ48*01 3.0 120.0 TGTGCCAGCTCCCAGTTGGGGGGGGTTTACAATGAGCAGTTCTTC CASSQLGGVYNEQFF TRBV7-9*01 TRBJ2-1*01 27.0 1188.0 CAGNNFGNEKLTF_CASSQLGGVYNEQFF 1 2921 BZLF1-190-197 EBV 0.6 2156 BZLF1-190-197 134 2787 12 EBV BZLF1 RAKFKQLL effector T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-B*08:01 B2M MHCI -8911 chip0423_452475 -2.49 11.07 Chip2 T1D_4 T1D TGTGCAAACGCCTTATCTAACTTTGGAAATGAGAAATTAACCTTT CANALSNFGNEKLTF TRAV12-3*01 TRAJ48*01 35.0 2049.0 TGTGCCAGGTCACTGAAGCTTTCTTT CARSc?tEAFF TRBV6-1*01 TRBJ1-1*01 2.0 21.0 CANALSNFGNEKLTF_CARSc?tEAFF 1 5232 PGT-178 PGT 0.9 1480 PGT-178 109 5123 3 HomoSapiens PGT LLAGIGTVPI Naive T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*02:01 B2M MHCI -8912 chip0423_551053 7.06 10.18 Chip2 T1D_6 T1D TGTGCAATGATCAGAGATGACAAGATCATCTTT CAMIRDDKIIF TRAV12-3*01 TRAJ30*01 32.0 2640.0 TGTGCCAGCAGCGCAACTAGCGGGGGGGCCTCGGGCACAGATACGCAGTATTTT CASSATSGGASGTDTQYF TRBV9*01 TRBJ2-3*01 27.0 1036.0 CAMIRDDKIIF_CASSATSGGASGTDTQYF 1 8505 MART1-ALA MART1 0.44 269 MART1-ALA 151 8354 7 HomoSapiens MART1 ALAGIGILTV transitional T cells between effector and memory populations PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*02:01 B2M MHCI -8913 chip0423_188782 9.55 9.86 Chip2 healthy_3 healthy _ 6746 5998 EBV-BRLF1 EBV 0.69 1264 EBV-BRLF1 141 5857 8 EBV BRLF1 YVLDHLIVV effector memory T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*02:01 B2M MHCI -8914 chip0423_81541 6.26 14.31 Chip2 healthy_3 healthy TGTGCTGTTGAAGTCGACAAGCTCATCTTT CAVEVDKLIF TRAV41*01 TRAJ34*01 1.0 53.0 CAVEVDKLIF_ 2 5812 NP44-52 FLU 0.75 474 NP44-52 150 5662 7 InfluenzaA NP CTELKLSDY transitional T cells between effector and memory populations PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*01:01 B2M MHCI -8915 chip0423_73952 14.31 10.45 Chip2 T1D_5 T1D TGTGCAGCAAGTGAAACCTCCTACGACAAGGTGATATTT CAASETSYDKVIF TRAV13-1*01 TRAJ50*01 2.0 39.0 TGTGCTGTGGGTGCGGGCCCGCCGGTAACCAGTTCTATTTT CAVGAGcc?AGNQFYF TRAV8-3*01 TRAJ49*01 7.0 518.0 0.7 TGTGCCAGCAGCTTCTTGGGGGAGGACACCGGGGAGCTGTTTTTT CASSFLGEDTGELFF TRBV7-9*01 TRBJ2-2*01 20.0 842.0 CAASETSYDKVIF_CASSFLGEDTGELFF 1 3278 BZLF1-190-197 EBV 0.75 2156 NEG 146 3132 12 EBV BZLF1 RAKFKQLL effector T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-B*08:01 B2M MHCI -8916 chip0423_527458 14.8 10.79 Chip2 T1D_6 T1D TGTGCAGAGAGTACAGGCAAACTAATCTTT CAESTGKLIF TRAV5*01 TRAJ37*01 1.0 32.0 TGCAGCGCCGGCAGGGACGGGACTAATGAAAAACTGTTTTTT CSAGRDGTNEKLFF TRBV29-1*01 TRBJ1-4*01 85.0 4624.0 CAESTGKLIF_CSAGRDGTNEKLFF 14 3615 EBV-BLMF1 EBV 0.67 2531 NEG 140 3475 12 EBV BLMF1 GLCTLVAML effector T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*02:01 B2M MHCI -8917 chip0423_523552 11.16 10.79 Chip2 T1D_4 T1D TGCATCCTCCCCCTTGCTGGTGGTACTAGCTATGGAAAGCTGACATTT CILPLAGGTSYGKLTF TRAV26-2*01 TRAJ52*01 22.0 1256.0 TGGGCCAGCTGCTCAGGACTGGCCTACGAGCAGTACTCC WASCSGLAYEQYS TRBV7-8*01 TRBJ2-7*01 2.0 181.0 CILPLAGGTSYGKLTF_WASCSGLAYEQYS 1 3792 EBNA3A-193-201 EBV 0.85 1022 EBNA3A-193-201 160 3632 9 EBV EBNA3A FLRGRAYGL effector memory T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-B*08:01 B2M MHCI -8918 chip0423_836020 -1.6 10.09 Chip2 healthy_3 healthy TGTGCATTTACTATATCTAACTCTGGAAATGAGAAATTAACCTTT CAFTISNSGNEKLTF TRAV12-3*01 TRAJ48*01 4.0 162.0 CAFTISNSGNEKLTF_ 1 6370 PGT-178 PGT 0.88 1480 PGT-178 127 6243 3 HomoSapiens PGT LLAGIGTVPI Naive T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*02:01 B2M MHCI -8919 chip0423_467214 -2.88 9.98 Chip2 T1D_5 T1D _ 6746 6869 IAPP-LNH-9 IAPP 0.85 15 IAPP-LNH-9 129 6740 2 HomoSapiens IAPP LNHLKATPI Naive T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-B*08:01 B2M MHCI -8920 chip0423_345972 14.34 10.41 Chip2 T1D_5 T1D TGTGCAGCAAAGGAAACCTCCTACGACAAGGTGATATTT CAAKETSYDKVIF TRAV13-1*01 TRAJ50*01 32.0 2082.0 TGTGCCAGCAGCTTACTAGGGGGCACCGACACCGGGGAGCTGTTTTTT CASSLLGGTDTGELFF TRBV7-9*01 TRBJ2-2*01 22.0 888.0 CAAKETSYDKVIF_CASSLLGGTDTGELFF 6 3758 BZLF1-190-197 EBV 0.8 2156 NEG 165 3593 12 EBV BZLF1 RAKFKQLL effector T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-B*08:01 B2M MHCI -8921 chip0423_877613 -4.2 9.42 Chip2 T1D_4 T1D TGTGTGGTTACCGGAACGGGGGAATATGGAAACAAACTGGTCTTT CVVTGTGEYGNKLVF TRAV12-1*01 TRAJ47*01 7.0 387.0 TGTGCCAGCAGCCCTGGGGCTCTCTACAATGAGCAGTTCTTC CASSPGALYNEQFF TRBV13*01 TRBJ2-1*01 29.0 2228.0 CVVTGTGEYGNKLVF_CASSPGALYNEQFF 1 5146 IGRP-152-160-WLI IGRP 0.62 27 NEG 120 5026 2 HomoSapiens IGRP FLWSVFWLI Naive T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*02:01 B2M MHCI -8922 chip0423_47995 10.54 8.28 Chip2 T1D_4 T1D TGTGCCAGCAGTTTGAACCCCGTTCTTCGGTTAGATACGCAGTATTTT CASSLNPVLRLDTQYF TRBV28*01 TRBJ2-3*01 22.0 970.0 _CASSLNPVLRLDTQYF 6 5663 EBNA3A-158-166 EBV 0.5 444 NEG 142 5521 10 EBV EBNA3A QAKWRLQTL effector memory T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-B*08:01 B2M MHCI -8923 chip0423_44122 14.42 10.33 Chip2 T1D_5 T1D TGTGCAGCGGCGGAAACCTCCTACGACAAGGTGATATTT CAAAETSYDKVIF TRAV13-1*01 TRAJ50*01 1.0 77.0 TGTGCCAGCCAACTAGCGGGAGGCACCGGGGAGCTGTTTTTT CASQLAGGTGELFF TRBV24-1*01 TRBJ2-2*01 12.0 593.0 CAAAETSYDKVIF_CASQLAGGTGELFF 131 3399 BZLF1-190-197 EBV 0.8 2156 NEG 147 3252 12 EBV BZLF1 RAKFKQLL effector T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-B*08:01 B2M MHCI -8924 chip0423_859450 10.0 9.61 Chip2 healthy_3 healthy TGCAGCTTCCAGGAATCCTTTTATGGCTACACCTTC CSFQESFYGYTF TRBV29-1*01 TRBJ1-2*01 31.0 3098.0 _CSFQESFYGYTF 4 3425 EBV-BLMF1 EBV 0.5 2531 NEG 125 3300 9 EBV BLMF1 GLCTLVAML effector memory T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*02:01 B2M MHCI -8925 chip0423_560249 5.6 10.21 Chip2 healthy_4 healthy _ 6746 4944 EBV-LMP2A EBV 0.91 700 EBV-LMP2A 121 4823 6 EBV LMP2A CLGGLLTMV central memory T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*02:01 B2M MHCI -8926 chip0423_222084 11.67 7.51 Chip2 T1D_6 T1D TGTGCCAGCAGCTTGGGACAGGCCTACGAGCAGTACTTC CASSLGQAYEQYF TRBV7-8*01 TRBJ2-7*01 36.0 2581.0 _CASSLGQAYEQYF 175 5048 EBNA3A-193-201 EBV 0.8 1022 NEG 130 4918 10 EBV EBNA3A FLRGRAYGL effector memory T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-B*08:01 B2M MHCI -8927 chip0423_140267 13.63 6.99 Chip2 T1D_4 T1D TGCCTCGTGGGTGAGATCAACAATGACATGCGCTTT CLVGEINNDMRF TRAV4*01 TRAJ43*01 21.0 1915.0 TGTGCCCGCCGCTTCCTGGGGGAGGGGGGCACAGATACGCCGTATTTT CARRFLGEGGTDTPYF TRBV11-2*01 TRBJ2-3*01 6.0 268.0 CLVGEINNDMRF_CARRFLGEGGTDTPYF 1 6125 BZLF1-190-197 EBV 0.59 2156 BZLF1-190-197 146 5979 10 EBV BZLF1 RAKFKQLL effector memory T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-B*08:01 B2M MHCI -8928 chip0423_81086 11.92 7.08 Chip2 T1D_5 T1D TGTGCAGCAGTCGAAACCTCCTACGACAAGGTGATATTT CAAVETSYDKVIF TRAV13-1*01 TRAJ50*01 7.0 444.0 TGTGCCAGCAGTCCGCCCGGGTCTAATGAAAAACTGTTTTTT CASSPPGSNEKLFF TRBV12-3*01,TRBV12-4*01 TRBJ1-4*01 4.0 233.0 CAAVETSYDKVIF_CASSPPGSNEKLFF 1 4077 BZLF1-190-197 EBV 0.88 2156 NEG 178 3899 10 EBV BZLF1 RAKFKQLL effector memory T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-B*08:01 B2M MHCI -8929 chip0423_834547 12.0 8.19 Chip2 T1D_6 T1D TGCGCCAGCAGTCTCCCTCCATGGGGCTGCCTACAATGAGCAGTTCTTC CASSLPPW??gAAYNEQFF TRBV4-3*01 TRBJ2-1*01 30.0 1524.0 _CASSLPPW??gAAYNEQFF 9 3621 EBNA3A-193-201 EBV 0.54 1022 NEG 150 3471 10 EBV EBNA3A FLRGRAYGL effector memory T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-B*08:01 B2M MHCI -8930 chip0423_682981 -0.18 9.15 Chip2 T1D_6 T1D TGTGCCAGCCGCTTCCACGGGGCGAGCAAACTGTTTTTT CASRFHGASKLFF TRBV7-9*01 TRBJ1-4*01 2.0 50.0 _CASRFHGASKLFF 1 5854 GAD65-141-149 GAD65 0.8 9 GAD65-141-149 134 5720 4 HomoSapiens GAD65 LLQEYNWEL Naive T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*02:01 B2M MHCI -8931 chip0423_229215 6.93 13.5 Chip2 T1D_6 T1D TGTGCTGTGAGAGCCATCCCTCCCGGAGGCTTCAAAACTCTCTTT CAVRAIPPGGFKTLF TRAV3*01 TRAJ9*01 5.0 110.0 TGCGCCCGCAGCTATGGGGCGAACACTGCAGCTTTCTTT CARSYGANTAAFF TRBV4-1*01 TRBJ1-1*01 5.0 291.0 CAVRAIPPGGFKTLF_CARSYGANTAAFF 1 3974 M1 FLU 0.47 1250 NEG 130 3844 7 InfluenzaA M1 GILGFVFTL transitional T cells between effector and memory populations PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*02:01 B2M MHCI -8932 chip0423_344494 12.13 7.18 Chip2 T1D_4 T1D TGCATCCTCCCGTTGGCTGGTGGTACTAGCTATGGAAAGCTGACATTT CILPLAGGTSYGKLTF TRAV26-2*01 TRAJ52*01 62.0 2358.0 TGTGCCAGCAGCCAAGGACAGGCCTACGAGCAGTACTTC CASSQGQAYEQYF TRBV7-8*01 TRBJ2-7*01 36.0 1791.0 CILPLAGGTSYGKLTF_CASSQGQAYEQYF 3 3946 EBNA3A-193-201 EBV 1.0 1022 NEG 139 3807 10 EBV EBNA3A FLRGRAYGL effector memory T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-B*08:01 B2M MHCI -8933 chip0423_153283 -2.74 8.92 Chip2 T1D_6 T1D TGCGCCAGCAGCCTGGGTGACTCCTACGAGCAGTACTTC CASSLGDSYEQYF TRBV4-1*01 TRBJ2-7*01 31.0 2451.0 _CASSLGDSYEQYF 1 7004 MART1-A28L MART1 0.71 84 NEG 148 6856 3 HomoSapiens MART1 ALGIGILTV Naive T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*02:01 B2M MHCI -8934 chip0423_339485 7.53 10.64 Chip2 T1D_5 T1D TGTGCAGCAAAGGAAACCTCCTACGACAAGGTGATATTT CAAKETSYDKVIF TRAV13-1*01 TRAJ50*01 27.0 2164.0 CAAKETSYDKVIF_ 5 4068 BZLF1-190-197 EBV 0.62 2156 NEG 138 3930 7 EBV BZLF1 RAKFKQLL transitional T cells between effector and memory populations PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-B*08:01 B2M MHCI -8935 chip0423_546537 16.16 10.82 Chip2 T1D_5 T1D TGTGCAATGAGGGCCATTGAGGGGGCAAACAACCTCTTCTTT CAMRAIEGANNLFF TRAV14/DV4*01 TRAJ36*01 33.0 1226.0 CAMRAIEGANNLFF_ 17 2545 BZLF1-190-197 EBV 1.0 2156 NEG 147 2398 12 EBV BZLF1 RAKFKQLL effector T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-B*08:01 B2M MHCI -8936 chip0423_310338 10.2 10.42 Chip2 T1D_4 T1D TGTGCCAGCAGCCAAGTCAACAACCCGGGGGATGGCTACACCTTC CASSQVNNPGDGYTF TRBV14*01 TRBJ1-2*01 5.0 201.0 _CASSQVNNPGDGYTF 94 4873 EBNA3A-158-166 EBV 0.86 444 NEG 165 4708 9 EBV EBNA3A QAKWRLQTL effector memory T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-B*08:01 B2M MHCI -8937 chip0423_714570 7.09 10.8 Chip2 T1D_6 T1D CTGCGCCAACAGTGACATTAGGGAGGGGCAGGGTGAAGCTTTCTTT LRQQ*H*gg??agGQGEAFF TRBV10-2*01 TRBJ1-1*01 1.0 10.0 _LRQQ*H*gg??agGQGEAFF 1 8030 EBNA3A-158-166 EBV 0.83 444 NEG 146 7884 7 EBV EBNA3A QAKWRLQTL transitional T cells between effector and memory populations PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-B*08:01 B2M MHCI -8938 chip0423_430552 13.35 10.78 Chip2 T1D_5 T1D TGTGCCAGCTCCCAGTTGGGGGGGGTTTACAATGAGCAGTTCTTC CASSQLGGVYNEQFF TRBV7-9*01 TRBJ2-1*01 36.0 2792.0 _CASSQLGGVYNEQFF 13 4022 BZLF1-190-197 EBV 0.67 2156 NEG 140 3882 9 EBV BZLF1 RAKFKQLL effector memory T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-B*08:01 B2M MHCI -8939 chip0423_418742 8.85 9.88 Chip2 T1D_5 T1D TGTGCCAGCAGAGCTATCGACAGGGCAAGGGATGGCTACACCTTC CASRAIDRARDGYTF TRBV7-9*01 TRBJ1-2*01 44.0 2662.0 _CASRAIDRARDGYTF 1 6303 BZLF1-190-197 EBV 0.62 2156 BZLF1-190-197 135 6168 8 EBV BZLF1 RAKFKQLL effector memory T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-B*08:01 B2M MHCI -8940 chip0423_197903 -3.22 8.4 Chip2 T1D_6 T1D _ 6746 5329 ZNT8-293-300 ZNT8 0.83 17 ZNT8-293-300 136 5193 2 HomoSapiens ZNT8 LAVDGVLSV Naive T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*02:01 B2M MHCI -8941 chip0423_514042 10.92 8.57 Chip2 T1D_5 T1D _ 6746 4826 BZLF1-190-197 EBV 0.88 2156 NEG 140 4686 10 EBV BZLF1 RAKFKQLL effector memory T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-B*08:01 B2M MHCI -8942 chip0423_370936 10.09 10.22 Chip2 healthy_3 healthy TGTGCCAGCAGCCAGATGTCCGATACGCAGTATTTT CASSQMSDTQYF TRBV6-2*01,TRBV6-3*01 TRBJ2-3*01 2.0 76.0 _CASSQMSDTQYF 6 3357 EBV-BRLF1 EBV 0.58 1264 NEG 147 3210 9 EBV BRLF1 YVLDHLIVV effector memory T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*02:01 B2M MHCI -8943 chip0423_518782 11.32 7.38 Chip2 healthy_4 healthy TGTGGCAGCAGCGCCGGGCTGGCCTACGAGCAGGACTTC CGSSAGLAYEQDF TRBV7-8*01 TRBJ2-7*01 3.0 336.0 _CGSSAGLAYEQDF 1 4978 EBNA3A-193-201 EBV 0.86 1022 NEG 138 4840 10 EBV EBNA3A FLRGRAYGL effector memory T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-B*08:01 B2M MHCI -8944 chip0423_395285 -1.79 8.41 Chip2 T1D_5 T1D TATGCCAGCAGCGTAGATAGGGGTTACAATGAGCAGTTCTTC YASSVDRGYNEQFF TRBV9*01 TRBJ2-1*01 1.0 15.0 _YASSVDRGYNEQFF 1 8518 IAPP-NTY-9 IAPP 0.64 4 IAPP-NTY-9 159 8359 3 HomoSapiens IAPP NTYGKRNAV Naive T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-B*08:01 B2M MHCI -8945 chip0423_177794 12.22 10.8 Chip2 T1D_5 T1D TGTGCAGAGATGGAAACCTCCTACGACAAGGTGATATTT CAEMETSYDKVIF TRAV13-2*01 TRAJ50*01 26.0 2065.0 TGTGCCAGCAGCTCCTTAAGCGGGGGGGCAGGAAATGAGCAGTTCTTC CASSSLSGGAGNEQFF TRBV7-9*01 TRBJ2-1*01 25.0 1021.0 CAEMETSYDKVIF_CASSSLSGGAGNEQFF 27 4396 BZLF1-190-197 EBV 0.74 2156 BZLF1-190-197 139 4257 9 EBV BZLF1 RAKFKQLL effector memory T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-B*08:01 B2M MHCI -8946 chip0423_99674 11.82 9.83 Chip2 T1D_4 T1D TGTGCTCTTCTCATGGACACGGGCAGGAGGGCACTTACTTTT CALLMDTGRRALTF TRAV19*01 TRAJ5*01 4.0 124.0 TGCAGCGTGGGGTCGGGGGAGGGCTACGAGCAGTACTTC CSVGSGEGYEQYF TRBV29-1*01 TRBJ2-7*01 14.0 1160.0 CALLMDTGRRALTF_CSVGSGEGYEQYF 1 3514 BZLF1-190-197 EBV 0.67 2156 NEG 142 3372 9 EBV BZLF1 RAKFKQLL effector memory T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-B*08:01 B2M MHCI -8947 chip0423_826193 13.42 11.31 Chip2 T1D_5 T1D TGTGCCAGCAGCTTGGACAGGGAATACTCTGGGGCCAACGTCCTGACTTTC CASSLDREYSGANVLTF TRBV7-8*01 TRBJ2-6*01 27.0 954.0 _CASSLDREYSGANVLTF 1 2677 BZLF1-190-197 EBV 0.8 2156 NEG 135 2542 9 EBV BZLF1 RAKFKQLL effector memory T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-B*08:01 B2M MHCI -8948 chip0423_586943 -1.63 8.34 Chip2 healthy_4 healthy TGTGCTACTGTTGCTTACTTTGGTCAGAATTTTGTCTTT CATVAYFGQNFVF TRAV17*01 TRAJ26*01 31.0 1776.0 TGCGCCAGCAGCTTGGGAACGGAAGGGACAGGGGGCGGATACGAGCAGTACTTC CASSLGTEGTGGGYEQYF TRBV5-1*01 TRBJ2-7*01 31.0 982.0 CATVAYFGQNFVF_CASSLGTEGTGGGYEQYF 1 5676 ZNT8-314-322 ZNT8 0.7 16 NEG 135 5541 3 HomoSapiens ZNT8 ILSAHVATA Naive T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*02:01 B2M MHCI -8949 chip0423_667580 14.93 10.74 Chip2 T1D_5 T1D TGTGCAGCAAGTGAGACCTCCTACGACAAGGTGATATTT CAASETSYDKVIF TRAV13-1*01 TRAJ50*01 74.0 8039.0 TGTGCCAGCAGCCCCCTGGGACAAAACACTGAAGCTTTCTTT CASSPLGQNTEAFF TRBV7-9*01 TRBJ1-1*01 51.0 1674.0 CAASETSYDKVIF_CASSPLGQNTEAFF 2 3042 BZLF1-190-197 EBV 0.64 2156 NEG 149 2893 12 EBV BZLF1 RAKFKQLL effector T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-B*08:01 B2M MHCI -8950 chip0423_269597 -2.95 10.05 Chip2 T1D_6 T1D TGTGCCAGCAGTTACTCGGGGGGCTACGAGCAGTACTTC CASSYSGGYEQYF TRBV6-5*01 TRBJ2-7*01 24.0 1223.0 _CASSYSGGYEQYF 1 5421 MART1-ALA MART1 0.83 269 NEG 142 5279 2 HomoSapiens MART1 ALAGIGILTV Naive T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*02:01 B2M MHCI -8951 chip0423_174986 11.42 11.02 Chip2 T1D_5 T1D TGTGCAGCGGCGGAAACCTCCTACGACAAGGTGATATTT CAAAETSYDKVIF TRAV13-1*01 TRAJ50*01 24.0 2026.0 TGTGCCAGCCAACTAGCGGGAGGCACCGGGGAGCTGTTTTTT CASQLAGGTGELFF TRBV24-1*01 TRBJ2-2*01 48.0 2649.0 CAAAETSYDKVIF_CASQLAGGTGELFF 131 3063 BZLF1-190-197 EBV 0.62 2156 NEG 151 2912 9 EBV BZLF1 RAKFKQLL effector memory T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-B*08:01 B2M MHCI -8952 chip0423_807702 -3.87 13.22 Chip2 T1D_6 T1D TGTGCTGTGAGGGCGGTTTTTTCTGGTGGCTACAATAAGCTGATTTTT CAVRAVFSGGYNKLIF TRAV21*01 TRAJ4*01 37.0 1634.0 TGTGCCAGCACCCCCTCCCGGGCCGGTCGCTACACCTTC CASTPSRAGRYTF TRBV12-3*01,TRBV12-4*01 TRBJ1-2*01 8.0 491.0 CAVRAVFSGGYNKLIF_CASTPSRAGRYTF 1 3721 NP140-148 FLU 0.83 102 NEG 104 3617 1 InfluenzaA NP HSNLNDATY Naive T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*01:01 B2M MHCI -8953 chip0423_546067 13.31 7.01 Chip2 T1D_5 T1D TGTGCAGCTCTCGAAACCTCCTACGACAAGGTGATATTT CAALETSYDKVIF TRAV13-1*01 TRAJ50*01 24.0 2297.0 TGTGCCAGCAGTCCCGACGGATCCACCGGGGAGCTGTTTTTT CASSPDGSTGELFF TRBV12-3*01,TRBV12-4*01 TRBJ2-2*01 61.0 3591.0 CAALETSYDKVIF_CASSPDGSTGELFF 14 3184 BZLF1-190-197 EBV 0.57 2156 BZLF1-190-197 169 3015 10 EBV BZLF1 RAKFKQLL effector memory T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-B*08:01 B2M MHCI -8954 chip0423_16648 9.09 8.96 Chip2 T1D_5 T1D TGTGTCCCAAGGGAAACCTCCTACGACAAGGTGATATTT CVPRETSYDKVIF TRAV13-1*01 TRAJ50*01 25.0 2112.0 TGTGCCAGCAGCTTCTTAGGCAGGGACCACACCGGGGAGCTGTTTTTT CASSFLGRDHTGELFF TRBV7-9*01 TRBJ2-2*01 60.0 2191.0 CVPRETSYDKVIF_CASSFLGRDHTGELFF 1 4966 BZLF1-190-197 EBV 0.78 2156 NEG 142 4824 8 EBV BZLF1 RAKFKQLL effector memory T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-B*08:01 B2M MHCI -8955 chip0423_589065 11.33 10.11 Chip2 T1D_5 T1D TGTGCTCCCTCCGAAACCTCCTACGACAAGGTGATATCT CAPSETSYDKVIS TRAV13-1*01 TRAJ50*01 31.0 3383.0 TGTGCCAGCAGCTTAGTACAGGGTGCCCACAATGAGCAGTTCTTC CASSLVQGAHNEQFF TRBV7-9*01 TRBJ2-1*01 48.0 2889.0 CAPSETSYDKVIS_CASSLVQGAHNEQFF 1 3913 BZLF1-190-197 EBV 0.44 2156 NEG 139 3774 9 EBV BZLF1 RAKFKQLL effector memory T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-B*08:01 B2M MHCI -8956 chip0423_257119 15.18 12.86 Chip2 T1D_5 T1D TGTGCCAGCAGCTCCTTAAGCGGGGGGGCAGGAAATGAGCAGTTCTTC CASSSLSGGAGNEQFF TRBV7-9*01 TRBJ2-1*01 45.0 1263.0 _CASSSLSGGAGNEQFF 33 2252 BZLF1-190-197 EBV 0.43 2156 NEG 152 2100 12 EBV BZLF1 RAKFKQLL effector T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-B*08:01 B2M MHCI -8957 chip0423_682530 5.76 12.02 Chip2 healthy_3 healthy TGTGTGGTGAACGGGGAAAATGCCAGACTCATGTTT CVVNGENARLMF TRAV12-1*01 TRAJ31*01 30.0 1959.0 TGTGCCAGCAGTGAAATGTGGGGAGCACCCCTCCACTTT CASSEMWGAPLHF TRBV2*01 TRBJ1-6*01 1.0 36.0 CVVNGENARLMF_CASSEMWGAPLHF 12 8734 NP44-52 FLU 0.97 474 NP44-52 133 8601 7 InfluenzaA NP CTELKLSDY transitional T cells between effector and memory populations PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*01:01 B2M MHCI -8958 chip0423_567971 12.66 6.67 Chip2 T1D_6 T1D TGCATCCTCCCACTTGCTGGTGGTACTAGCTATGGAAAGCTGACATTT CILPLAGGTSYGKLTF TRAV26-2*01 TRAJ52*01 32.0 1437.0 TGTGCCAGCAGCTTGGGACAGGCCTACGAGCAGTACTTC CASSLGQAYEQYF TRBV7-8*01 TRBJ2-7*01 12.0 689.0 CILPLAGGTSYGKLTF_CASSLGQAYEQYF 308 5234 EBNA3A-193-201 EBV 0.85 1022 EBNA3A-193-201 179 5055 10 EBV EBNA3A FLRGRAYGL effector memory T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-B*08:01 B2M MHCI -8959 chip0423_514849 10.9 8.63 Chip2 T1D_4 T1D TGTGGCGGTTCTTGCACCGCCCCGCTTCTCTTT CGGSCTAPLLF TRAV27*01 TRAJ34*01 19.0 1546.0 TGTGCCAGCAGCTCGACAGGGGGCGGGGATCAGCCCCAGCATTTT CASSSTGGGDQPQHF TRBV7-9*01 TRBJ1-5*01 119.0 4199.0 CGGSCTAPLLF_CASSSTGGGDQPQHF 1 5285 BZLF1-190-197 EBV 0.62 2156 NEG 137 5148 10 EBV BZLF1 RAKFKQLL effector memory T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-B*08:01 B2M MHCI -8960 chip0423_793433 9.23 8.66 Chip2 T1D_5 T1D TGTGCCAGCACCCACCCCCAGGATGTGAACACCGGGGAGCTGTTTTTT CASTHPQDVNTGELFF TRBV7-9*01 TRBJ2-2*01 41.0 2077.0 _CASTHPQDVNTGELFF 5 5798 BZLF1-190-197 EBV 0.68 2156 BZLF1-190-197 165 5633 8 EBV BZLF1 RAKFKQLL effector memory T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-B*08:01 B2M MHCI -8961 chip0423_792525 11.77 6.32 Chip2 T1D_4 T1D TGTGCCAGCAGCCAAGTCAACAACCCGGGGGATGGCTACACCTTC CASSQVNNPGDGYTF TRBV14*01 TRBJ1-2*01 9.0 254.0 _CASSQVNNPGDGYTF 94 5504 EBNA3A-158-166 EBV 0.67 444 EBNA3A-158-166 143 5361 10 EBV EBNA3A QAKWRLQTL effector memory T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-B*08:01 B2M MHCI -8962 chip0423_773234 10.55 9.15 Chip2 T1D_6 T1D TGCGCCAGCAGCCAAGACTATGGTCGGGGTGGCTACACCTTC CASSQDYGRGGYTF TRBV4-1*01 TRBJ1-2*01 28.0 1154.0 _CASSQDYGRGGYTF 4 6388 LMP2A-CPL EBV 0.91 44 NEG 140 6248 10 EBV LMP2A CPLSKILL effector memory T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-B*08:01 B2M MHCI -8963 chip0423_772265 6.3 14.33 Chip2 healthy_3 healthy TGTGCCCCTGCATCAGGAGGAAGCTACATACCTACATTT CAPASGGSYIPTF TRAV24*01 TRAJ6*01 13.0 860.0 TGTGCCAGCTGCCGGGACGGGACCTACGAGCAGTACTTC CASCRDGTYEQYF TRBV10-3*01 TRBJ2-7*01 45.0 3287.0 CAPASGGSYIPTF_CASCRDGTYEQYF 10 5403 NP44-52 FLU 0.5 474 NP44-52 166 5237 7 InfluenzaA NP CTELKLSDY transitional T cells between effector and memory populations PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*01:01 B2M MHCI -8964 chip0423_494985 -1.3 9.75 Chip2 T1D_5 T1D TGTGCAATGAGAGAGTGGGGTAACACCGACAAGCTCATCTTT CAMREWGNTDKLIF TRAV14/DV4*01 TRAJ34*01 2.0 75.0 CAMREWGNTDKLIF_ 1 6342 NP225-233 FLU 0.53 23 NEG 128 6214 4 InfluenzaA NP ILKGKFQTA Naive T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-B*08:01 B2M MHCI -8965 chip0423_851941 15.84 10.3 Chip2 T1D_5 T1D TGTGCCAGCAGCTTCCTCGGACAGAGCCAAGAGACCCAGTACTTC CASSFLGQSQETQYF TRBV7-9*01 TRBJ2-5*01 10.0 462.0 _CASSFLGQSQETQYF 1 3974 BZLF1-190-197 EBV 0.64 2156 NEG 137 3837 12 EBV BZLF1 RAKFKQLL effector T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-B*08:01 B2M MHCI -8966 chip0423_849535 -3.97 9.64 Chip2 T1D_6 T1D TGTGCTACTCAGGGGATGGGCCTTGGGGTACACAATGAGCAGTTCTTC CATQGMGLGVHNEQFF TRBV2*01 TRBJ2-1*01 19.0 998.0 _CATQGMGLGVHNEQFF 1 5231 PGT-178 PGT 0.5 1480 PGT-178 140 5091 2 HomoSapiens PGT LLAGIGTVPI Naive T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*02:01 B2M MHCI -8967 chip0423_754519 16.41 11.17 Chip2 healthy_3 healthy TGTGCCGTGAGTGATCGGAACTTCAACAAATTTTACTTT CAVSDRNFNKFYF TRAV8-4*01 TRAJ21*01 24.0 1565.0 TGCAGTGCTAAAGACTCAGCCCCAGCATTTT CSAKD??tQPQHF TRBV20-1*01 TRBJ1-5*01 2.0 64.0 CAVSDRNFNKFYF_CSAKD??tQPQHF 1 3345 NP44-52 FLU 0.4 474 NP44-52 120 3225 12 InfluenzaA NP CTELKLSDY effector T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*01:01 B2M MHCI -8968 chip0423_439136 -3.15 13.73 Chip2 T1D_4 T1D TGCAGTGCTAGCGGGGGCCTTGGCACGCAGTATTTT CSASGGLGTQYF TRBV20-1*01 TRBJ2-3*01 23.0 1957.0 _CSASGGLGTQYF 1 3638 PGT-178 PGT 0.79 1480 PGT-178 137 3501 1 HomoSapiens PGT LLAGIGTVPI Naive T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*02:01 B2M MHCI -8969 chip0423_434846 11.6 9.25 Chip2 T1D_5 T1D TGTGCCAGCAGTTTTACAGGTAGCTCTGGAAACACCATATATTTT CASSFTGSSGNTIYF TRBV12-3*01,TRBV12-4*01 TRBJ1-3*01 27.0 1106.0 _CASSFTGSSGNTIYF 7 4465 BZLF1-190-197 EBV 0.6 2156 NEG 127 4338 10 EBV BZLF1 RAKFKQLL effector memory T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-B*08:01 B2M MHCI -8970 chip0423_281709 12.4 10.79 Chip2 T1D_5 T1D TGTGCCAGCAGCCCAATGGGGGCGGAGAACACTGAAGCTTTCTTT CASSPMGAENTEAFF TRBV7-9*01 TRBJ1-1*01 52.0 2188.0 _CASSPMGAENTEAFF 1 4923 BZLF1-190-197 EBV 0.89 2156 NEG 139 4784 9 EBV BZLF1 RAKFKQLL effector memory T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-B*08:01 B2M MHCI -8971 chip0423_70805 8.94 9.81 Chip2 T1D_4 T1D TGTGCTCTGAGAAGGGGAACACCAATGCAGGCAACTCCACCTTT CALRRGTc?cNAGNSTF TRAV9-2*01 TRAJ27*01 3.0 46.0 CALRRGTc?cNAGNSTF_ 1 4609 EBV-BLMF1 EBV 0.44 2531 NEG 160 4449 8 EBV BLMF1 GLCTLVAML effector memory T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*02:01 B2M MHCI -8972 chip0423_632959 -3.54 8.9 Chip2 T1D_5 T1D TGTGCAATGAGTGAGGGGAGAGGTGGGGGTAGCACCTGTAGACTGTCATTT CAMSEGRGGGSTCRLSF TRAV12-3*01 TRAJ53*01 59.0 1732.0 TGTGCCAGCAGCTTAACGAACACCCCGGGGGGTACGCAGTATTTT CASSLTNTPGGTQYF TRBV7-3*01 TRBJ2-3*01 25.0 864.0 CAMSEGRGGGSTCRLSF_CASSLTNTPGGTQYF 1 5293 LMP2A-CPL EBV 0.42 44 NEG 132 5161 2 EBV LMP2A CPLSKILL Naive T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-B*08:01 B2M MHCI -8973 chip0423_440756 6.79 12.21 Chip2 healthy_3 healthy TGCATCCTGGTCTGGTTCTGCAAGGCAACTGACCTTT CILVWF??tARQLTF TRAV26-2*01 TRAJ22*01 1.0 31.0 CILVWF??tARQLTF_ 2 5821 NP44-52 FLU 0.68 474 NP44-52 130 5691 7 InfluenzaA NP CTELKLSDY transitional T cells between effector and memory populations PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*01:01 B2M MHCI -8974 chip0423_70341 11.29 10.27 Chip2 T1D_4 T1D TGTGCCTACGGTGGGGACACAGGCTTTCAGAAACTTGTATTT CAYGGDTGFQKLVF TRAV13-1*01 TRAJ8*01 36.0 1654.0 TGCGCCAGCAGCTTCTCAGCGGGGGGGCCCGGAACCGGGGAGCTGTTTTTT CASSFSAGGPGTGELFF TRBV5-1*01 TRBJ2-2*01 32.0 1266.0 CAYGGDTGFQKLVF_CASSFSAGGPGTGELFF 1 4515 BZLF1-190-197 EBV 0.43 2156 NEG 151 4364 9 EBV BZLF1 RAKFKQLL effector memory T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-B*08:01 B2M MHCI -8975 chip0423_416819 -3.38 10.6 Chip2 T1D_6 T1D TGTGCCAGCAGCTTAGGCAGGTCCACTGAAGCTTTCTTT CASSLGRSTEAFF TRAV36/DV7*01 TRAJ40*01 2.0 5.0 TGTGCCAGCAGCTTAGGCAGGTCCACTGAAGCTTTCTTT CASSLGRSTEAFF TRBV7-9*01 TRBJ1-1*01 17.0 843.0 CASSLGRSTEAFF_CASSLGRSTEAFF 1 6289 ZNT8-YAK-9 ZNT8 0.86 59 NEG 133 6156 2 HomoSapiens ZNT8 YAKWKLCSA Naive T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-B*08:01 B2M MHCI -8976 chip0423_11229 10.47 11.45 Chip2 healthy_3 healthy _ 6746 3665 EBV-BRLF1 EBV 0.69 1264 EBV-BRLF1 122 3543 9 EBV BRLF1 YVLDHLIVV effector memory T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*02:01 B2M MHCI -8977 chip0423_424598 12.65 8.61 Chip2 healthy_4 healthy TGTGCTCTGAGCGCGTTAAACAATCAGGGAGCCCAGAAGCTGGTATTT CALSALNNQGAQKLVF TRAV19*01 TRAJ54*01 1.0 45.0 CGTGCCAGCAGCTTAGATAGTCCTTCCTACTACGAGCAGTACTTC RASSLDSPSYYEQYF TRBV11-2*01 TRBJ2-7*01 12.0 524.0 CALSALNNQGAQKLVF_RASSLDSPSYYEQYF 1 2051 ZNT8-273-282 ZNT8 0.5 8 NEG 131 1920 10 HomoSapiens ZNT8 LLMEGVPKSL effector memory T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*02:01 B2M MHCI -8978 chip0423_298071 -2.08 8.57 Chip2 T1D_6 T1D TATGCTCTGAGTGAGGCCTCGCGATTTATAACCAGGGCGGATCGCTTATCTTC YALSEASRtt?YNQGGSLIF TRAV19*01 TRAJ23*01 57.0 1804.0 TGTGCCAGCAGCTCCTTCGTGGGGGGCGGAAACACCATATATTTT CASSSFVGGGNTIYF TRBV13*01 TRBJ1-3*01 5.0 256.0 YALSEASRtt?YNQGGSLIF_CASSSFVGGGNTIYF 1 5851 PREINS-2-10 INS 0.5 37 NEG 126 5725 3 HomoSapiens PREINS ALWMRLLPL Naive T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*02:01 B2M MHCI -8979 chip0423_697303 -0.41 7.94 Chip2 T1D_6 T1D _ 6746 5324 PGT-178 PGT 0.56 1480 PGT-178 143 5181 4 HomoSapiens PGT LLAGIGTVPI Naive T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*02:01 B2M MHCI -8980 chip0423_512130 10.77 11.99 Chip2 T1D_5 T1D TGTGCCAGCAGCTTAGTACAGGGTGTCCACAATGAGCAGTTCTTC CASSLVQGVHNEQFF TRBV7-9*01 TRBJ2-1*01 27.0 783.0 _CASSLVQGVHNEQFF 3 2834 BZLF1-190-197 EBV 0.6 2156 NEG 143 2691 11 EBV BZLF1 RAKFKQLL effector T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-B*08:01 B2M MHCI -8981 chip0423_220207 7.38 10.02 Chip2 healthy_3 healthy TGTGCCAGCAAAGATTTTCATTCAGCCGAGCAGTACTTC CASKDFHSAEQYF TRBV27*01 TRBJ2-7*01 2.0 53.0 _CASKDFHSAEQYF 1 5475 GAD65-159-167 GAD65 0.49 7 GAD65-159-167 128 5347 7 HomoSapiens GAD65 ILMHCQTTL transitional T cells between effector and memory populations PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*02:01 B2M MHCI -8982 chip0423_831725 -3.15 9.44 Chip2 T1D_4 T1D TGCAGTGCTAGTCCGCTCGGGGAGACCCAGTACTTC CSASPLGETQYF TRBV20-1*01 TRBJ2-5*01 26.0 1921.0 _CSASPLGETQYF 1 7367 EBV-BRLF1 EBV 0.42 1264 NEG 119 7248 2 EBV BRLF1 YVLDHLIVV Naive T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*02:01 B2M MHCI -8983 chip0423_381862 13.41 12.29 Chip2 T1D_5 T1D TGTGCAGCAAGTGAAACCTCCTACGACAAGGTGATATTT CAASETSYDKVIF TRAV13-1*01 TRAJ50*01 6.0 393.0 TGTGCCAGCAGCTTATTGGGGGACTCCTCTGGAAACACCATATATTTT CASSLLGDSSGNTIYF TRBV7-9*01 TRBJ1-3*01 13.0 522.0 CAASETSYDKVIF_CASSLLGDSSGNTIYF 1 2129 BZLF1-190-197 EBV 0.6 2156 NEG 135 1994 12 EBV BZLF1 RAKFKQLL effector T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-B*08:01 B2M MHCI -8984 chip0423_789314 10.84 7.36 Chip2 T1D_5 T1D TGTGCAGCAACGGAAACCTCCTACGACAAGGTGATATTT CAATETSYDKVIF TRAV13-1*01 TRAJ50*01 10.0 684.0 TGTGCCAGCAGCTTAATGGGCAGAATTAATTCACCCCTCCACTTT CASSLMGRINSPLHF TRBV7-9*01 TRBJ1-6*01 26.0 430.0 CAATETSYDKVIF_CASSLMGRINSPLHF 1 5496 BZLF1-190-197 EBV 1.0 2156 NEG 145 5351 6 EBV BZLF1 RAKFKQLL central memory T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-B*08:01 B2M MHCI -8985 chip0423_226579 -3.67 9.99 Chip2 T1D_6 T1D TCTGCGGCCGTTCTTAGGATGTCGCTCCATCCCTACATTT SAAVLRat??gtRSIPTF TRAV13-1*01 TRAJ6*01 4.0 474.0 TGTGCCAGCAGCTCCGGACTAGCGCACTCCTACGAGCAGTACTTC CASSSGLAHSYEQYF TRBV6-2*01,TRBV6-3*01 TRBJ2-7*01 50.0 2841.0 SAAVLRat??gtRSIPTF_CASSSGLAHSYEQYF 1 5795 EBNA3A-158-166 EBV 0.52 444 NEG 131 5664 2 EBV EBNA3A QAKWRLQTL Naive T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-B*08:01 B2M MHCI -8986 chip0423_681726 -3.13 7.81 Chip2 T1D_4 T1D TTTTCTCCGGTCGGTGGGGCTTGCTGCTATAAATTGTTCTTC FSPVGGACCYKLFF TRAV17*01 TRAJ12*01 25.0 1238.0 TGCGCCAGCAGCCAAGCGTTAGGTGGGGGGGGCACTGAAGCTTTCTTT CASSQALGGGGTEAFF TRBV4-3*01 TRBJ1-1*01 48.0 1881.0 FSPVGGACCYKLFF_CASSQALGGGGTEAFF 1 6338 G6PC2-NLI-8 IGRP 0.55 32 NEG 111 6227 2 HomoSapiens G6PC2 NLIFKWIL Naive T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-B*08:01 B2M MHCI -8987 chip0423_369084 15.61 9.73 Chip2 healthy_4 healthy TGTGCTTTCAGGGCCTTTCTGGTGGCTACATTAAGCTGCCTTTT CAFRAFLg?tGYIKLPF TRAV38-1*01 TRAJ4*01 11.0 608.0 TGCAGCGTTGGCGCAGGGGGAACTAATGAAAAACTGTTTTTT CSVGAGGTNEKLFF TRBV29-1*01 TRBJ1-4*01 209.0 9939.0 CAFRAFLg?tGYIKLPF_CSVGAGGTNEKLFF 1 3584 EBV-BLMF1 EBV 0.8 2531 NEG 135 3449 12 EBV BLMF1 GLCTLVAML effector T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*02:01 B2M MHCI -8988 chip0423_312914 11.55 11.02 Chip2 T1D_5 T1D TGTGCCAGCCAACTAGCGGGAGGCACCGGGGAGCTGTTTTTT CASQLAGGTGELFF TRBV24-1*01 TRBJ2-2*01 17.0 674.0 _CASQLAGGTGELFF 69 3368 BZLF1-190-197 EBV 0.92 2156 NEG 132 3236 9 EBV BZLF1 RAKFKQLL effector memory T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-B*08:01 B2M MHCI -8989 chip0423_761653 8.01 11.23 Chip2 T1D_4 T1D GGCGTCCTGCCTCTTGCTGGTGCTGCTAGCTCTGGCACGCTGCCCTTT GVLPLAGAASSGTLPF TRAV26-2*01 TRAJ52*01 17.0 871.0 TGTGCCAGCAGCTTAGGGCAAGCCTACGAGCAGTACTTC CASSLGQAYEQYF TRBV7-8*01 TRBJ2-7*01 16.0 984.0 GVLPLAGAASSGTLPF_CASSLGQAYEQYF 1 6534 EBNA3A-193-201 EBV 0.67 1022 EBNA3A-193-201 125 6409 7 EBV EBNA3A FLRGRAYGL transitional T cells between effector and memory populations PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-B*08:01 B2M MHCI -8990 chip0423_800408 -3.59 11.41 Chip2 T1D_4 T1D _ 6746 5905 GFAP-LLN-8 GFAP 0.71 6 NEG 121 5784 1 HomoSapiens GFAP LLNVKLAL Naive T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-B*08:01 B2M MHCI -8991 chip0423_273581 9.0 11.23 Chip2 T1D_4 T1D TGTGCATCTAATACCAGCACTGCCGGTAAACTCGCCTTT CASNTSTAGKLAF TRAV29/DV5*01 TRAJ44*01 15.0 527.0 TGCAGTGCTACTGATCCTCTTCAGTATGGCTACACCTTC CSATDPLQYGYTF TRBV20-1*01 TRBJ1-2*01 23.0 970.0 CASNTSTAGKLAF_CSATDPLQYGYTF 1 7128 EBV-BRLF1 EBV 0.85 1264 EBV-BRLF1 159 6969 9 EBV BRLF1 YVLDHLIVV effector memory T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*02:01 B2M MHCI -8992 chip0423_59565 11.97 13.0 Chip2 T1D_4 T1D TGTGCCAGCAGCTTAGCGGTCGGAGAAGGACCCCAGCATTTT CASSLAVGEGPQHF TRBV7-9*01 TRBJ1-5*01 3.0 72.0 _CASSLAVGEGPQHF 113 2662 BZLF1-190-197 EBV 0.82 2156 BZLF1-190-197 156 2506 11 EBV BZLF1 RAKFKQLL effector T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-B*08:01 B2M MHCI -8993 chip0423_8252 8.89 13.62 Chip2 T1D_4 T1D TGCGGCACAGAGCCTGATTCAGGAAACACACCTCTTGTCTTT CGTEPDSGNTPLVF TRAV30*01 TRAJ29*01 1.0 58.0 TGTGCCAGCAGCTGGGGGCCGGAGCAGTACTTC CASSWGPEQYF TRBV7-9*01 TRBJ2-7*01 1.0 25.0 CGTEPDSGNTPLVF_CASSWGPEQYF 1 2701 EBNA3A-193-201 EBV 0.67 1022 NEG 145 2556 11 EBV EBNA3A FLRGRAYGL effector T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-B*08:01 B2M MHCI -8994 chip0423_829189 14.97 12.84 Chip2 T1D_5 T1D TGTGCAATGAGAGAGGGCGAGGGTGGAGGCTTCAAAACTATCTTT CAMREGEGGGFKTIF TRAV14/DV4*01 TRAJ9*01 8.0 161.0 TGTGCCAGCAGCTCCGGACTAGCGGGGGGCTCTCACACCGGGGAGCTGTTTTTT CASSSGLAGGSHTGELFF TRBV11-1*01 TRBJ2-2*01 31.0 1139.0 CAMREGEGGGFKTIF_CASSSGLAGGSHTGELFF 10 2330 BZLF1-190-197 EBV 0.6 2156 NEG 174 2156 12 EBV BZLF1 RAKFKQLL effector T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-B*08:01 B2M MHCI -8995 chip0423_705277 13.74 11.94 Chip2 T1D_5 T1D TGTGCAGCAAGCGAAACCTCCTACGACAAGGTGATATTT CAASETSYDKVIF TRAV13-1*01 TRAJ50*01 22.0 1148.0 TGTGCCAGCAGCTCCCTCGGGGTTAAGGATTCACCCCTCCACTTT CASSSLGVKDSPLHF TRBV7-9*01 TRBJ1-6*01 56.0 2131.0 CAASETSYDKVIF_CASSSLGVKDSPLHF 1 2594 BZLF1-190-197 EBV 0.76 2156 BZLF1-190-197 121 2473 12 EBV BZLF1 RAKFKQLL effector T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-B*08:01 B2M MHCI -8996 chip0423_575541 15.54 12.27 Chip2 healthy_4 healthy TGTGCTGTGGAGAAGAAGAACACCGACAAGCTCATCTTT CAVEKKNTDKLIF TRAV21*01 TRAJ34*01 16.0 623.0 TGTGCCAGCAGCTTAAACGTCGGAGAGGGCGCAGGAAACACCATATATTTT CASSLNVGEGAGNTIYF TRBV7-6*01 TRBJ1-3*01 33.0 901.0 CAVEKKNTDKLIF_CASSLNVGEGAGNTIYF 3 1785 BZLF1-190-197 EBV 1.0 2156 NEG 159 1626 12 EBV BZLF1 RAKFKQLL effector T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-B*08:01 B2M MHCI -8997 chip0423_680834 -3.55 8.59 Chip2 T1D_6 T1D TGTGCCAGCCGTTACGCGGCAGGGGTTTCACCCCTCCACTTT CASRYAAGVSPLHF TRAV9-1*01 TRAJ11*01 2.0 4.0 TGTGCCAGCAGTTACGCGGCAGGGGTTTCACCCCTCCACTTT CASSYAAGVSPLHF TRBV6-2*01,TRBV6-3*01 TRBJ1-6*01 49.0 2142.0 CASRYAAGVSPLHF_CASSYAAGVSPLHF 1 9709 PGT-178 PGT 0.7 1480 NEG 136 9573 2 HomoSapiens PGT LLAGIGTVPI Naive T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*02:01 B2M MHCI -8998 chip0423_704895 11.47 8.56 Chip2 T1D_4 T1D TGCATCCTGCCATTGGAGGGTGGTACTAGCTATGGAAAGCTGACATTT CILPLEGGTSYGKLTF TRAV26-2*01 TRAJ52*01 35.0 1154.0 TGTGCCCGCAGCTCGGGACAGGCCTCCGAGCCGTACTTC CARSSGQASEPYF TRBV7-8*01 TRBJ2-7*01 5.0 387.0 CILPLEGGTSYGKLTF_CARSSGQASEPYF 1 4122 EBNA3A-193-201 EBV 0.78 1022 EBNA3A-193-201 151 3971 10 EBV EBNA3A FLRGRAYGL effector memory T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-B*08:01 B2M MHCI -8999 chip0423_590613 8.75 13.56 Chip2 healthy_3 healthy TGTGCCAGCAGTGGGCTAGCGGGAGTTCATAGTTACGAGCAGTACTTC CASSGLAGVHSYEQYF TRBV2*01 TRBJ2-7*01 7.0 425.0 _CASSGLAGVHSYEQYF 2 3664 PB1-590-599 FLU 0.56 37 PB1-590-599 121 3543 11 InfluenzaA PB1 LVSDGGPNLY effector T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*01:01 B2M MHCI -9000 chip0423_441120 11.78 10.81 Chip2 T1D_5 T1D TGTGCCAGCAGTTTTACAGGTAGCTCTGGAAACACCATATATTTT CASSFTGSSGNTIYF TRBV12-3*01,TRBV12-4*01 TRBJ1-3*01 49.0 1774.0 _CASSFTGSSGNTIYF 7 3129 BZLF1-190-197 EBV 0.73 2156 NEG 156 2973 9 EBV BZLF1 RAKFKQLL effector memory T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-B*08:01 B2M MHCI -9001 chip0423_417134 -1.89 8.78 Chip2 healthy_4 healthy _ 6746 4794 PGT-178 PGT 0.88 1480 PGT-178 112 4682 3 HomoSapiens PGT LLAGIGTVPI Naive T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*02:01 B2M MHCI -9002 chip0423_788378 11.34 12.11 Chip2 T1D_5 T1D TGTGCCAGCATCCCAAAACAAGAGAACACCATATATTTT CASIPKQENTIYF TRBV12-3*01,TRBV12-4*01 TRBJ1-3*01 59.0 2035.0 _CASIPKQENTIYF 3 3397 BZLF1-190-197 EBV 0.8 2156 NEG 135 3262 11 EBV BZLF1 RAKFKQLL effector T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-B*08:01 B2M MHCI -9003 chip0423_687434 -2.52 13.45 Chip2 healthy_3 healthy TGTGCCAGCAGCTTACGGCCGGAGAATTCACCCCTCCACTTT CASSLRPENSPLHF TRBV13*01 TRBJ1-6*01 12.0 714.0 _CASSLRPENSPLHF 1 3142 POL-132-140 HIV 0.4 37 NEG 114 3028 1 HIV-1 POL LVGPTPVNI Naive T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*02:01 B2M MHCI -9004 chip0423_440285 10.96 10.53 Chip2 T1D_4 T1D TGTGCTACGGCGGGTCGCTCCGCTTTCAGCACCCTCACCTTT CATAGRSAFSTLTF TRAV17*01 TRAJ11*01 8.0 274.0 TGTGCCAGCAGCCAAGTCAACAACCCGGGGGATGGCTACACCTTC CASSQVNNPGDGYTF TRBV14*01 TRBJ1-2*01 15.0 314.0 CATAGRSAFSTLTF_CASSQVNNPGDGYTF 1 5939 EBNA3A-158-166 EBV 0.91 444 EBNA3A-158-166 164 5775 9 EBV EBNA3A QAKWRLQTL effector memory T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-B*08:01 B2M MHCI -9005 chip0423_53997 -4.26 9.63 Chip2 T1D_6 T1D TGTGCTGGGAGAGGTCGCTTT CAGRGRF TRAV21*01 TRAJ37*01 5.0 17.0 TGTGCCAGCAGCTTGGACTCCAACTCGGCCGAGCAGTACTTC CASSLDSNSAEQYF TRBV7-9*01 TRBJ2-7*01 21.0 1174.0 CAGRGRF_CASSLDSNSAEQYF 1 6173 PA-46-54 FLU 0.5 18 NEG 136 6037 2 InfluenzaA PA FMYSDFHFI Naive T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*02:01 B2M MHCI -9006 chip0423_674703 14.81 12.78 Chip2 T1D_5 T1D TGTGCCAGCACCCAGGTAGGCTCTCCCCACTATGGCTACACCTTC CASTQVGSPHYGYTF TRBV7-9*01 TRBJ1-2*01 2.0 96.0 _CASTQVGSPHYGYTF 1 2027 BZLF1-190-197 EBV 0.42 2156 NEG 145 1882 12 EBV BZLF1 RAKFKQLL effector T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-B*08:01 B2M MHCI -9007 chip0423_558288 -3.93 8.82 Chip2 healthy_3 healthy TGTGCCGTGAACGAGGGTGGTACTAGCTATGGAAAGCTGACATTT CAVNEGGTSYGKLTF TRAV12-2*01 TRAJ52*01 17.0 541.0 TGTGCCAGCACCCTTTCGGGGGGCACTGAAGCTTTCTTT CASTLSGGTEAFF TRBV28*01 TRBJ1-1*01 7.0 277.0 CAVNEGGTSYGKLTF_CASTLSGGTEAFF 1 7235 PGT-178 PGT 0.61 1480 PGT-178 130 7105 2 HomoSapiens PGT LLAGIGTVPI Naive T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*02:01 B2M MHCI -9008 chip0423_377496 16.22 10.74 Chip2 healthy_3 healthy _ 6746 3042 NP44-52 FLU 0.71 474 NP44-52 156 2886 12 InfluenzaA NP CTELKLSDY effector T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*01:01 B2M MHCI -9009 chip0423_799168 11.7 8.12 Chip2 healthy_4 healthy TGCGCCAGCAGCTCGGACGGCATGAACACTGAAGCTTTCTTT CASSSDGMNTEAFF TRBV10-2*01 TRBJ1-1*01 20.0 1110.0 _CASSSDGMNTEAFF 10 3392 EBV-LMP2A EBV 0.82 700 NEG 133 3259 10 EBV LMP2A CLGGLLTMV effector memory T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*02:01 B2M MHCI -9010 chip0423_624520 7.6 9.44 Chip2 T1D_5 T1D _ 6746 7792 BZLF1-190-197 EBV 0.78 2156 NEG 146 7646 8 EBV BZLF1 RAKFKQLL effector memory T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-B*08:01 B2M MHCI -9011 chip0423_749173 6.12 13.94 Chip2 healthy_3 healthy _ 6746 6652 NP44-52 FLU 0.48 474 NP44-52 135 6517 7 InfluenzaA NP CTELKLSDY transitional T cells between effector and memory populations PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*01:01 B2M MHCI -9012 chip0423_653194 -2.05 11.09 Chip2 T1D_4 T1D _ 6746 4766 ZNT8-173-181 ZNT8 0.83 27 ZNT8-173-181 132 4634 3 HomoSapiens ZNT8 IQATVMIIV Naive T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*02:01 B2M MHCI -9013 chip0423_514676 5.93 13.63 Chip2 healthy_3 healthy TGTGCCCCTGCATCAGGAGGAAGCTACATACCTACATTT CAPASGGSYIPTF TRAV24*01 TRAJ6*01 51.0 4044.0 TGTGCCAGCTGCCGGGACGGGACCTACGAGCAGTACTTC CASCRDGTYEQYF TRBV10-3*01 TRBJ2-7*01 35.0 2319.0 CAPASGGSYIPTF_CASCRDGTYEQYF 10 6335 NP44-52 FLU 0.87 474 NP44-52 120 6215 7 InfluenzaA NP CTELKLSDY transitional T cells between effector and memory populations PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*01:01 B2M MHCI -9014 chip0423_404072 11.58 7.96 Chip2 T1D_5 T1D TGTGCCAGCAGTCCCGACGGATCCACCGGGGAGCTGTTTTTT CASSPDGSTGELFF TRBV12-3*01,TRBV12-4*01 TRBJ2-2*01 14.0 529.0 _CASSPDGSTGELFF 10 2919 BZLF1-190-197 EBV 0.71 2156 NEG 148 2771 10 EBV BZLF1 RAKFKQLL effector memory T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-B*08:01 B2M MHCI -9015 chip0423_432717 -3.64 12.5 Chip2 T1D_4 T1D TGTGCAATGAGAGGGGGCCCCGGGAACACCGACAAGCTCATCTTT CAMRGGPGNTDKLIF TRAV14/DV4*01 TRAJ34*01 17.0 569.0 CAMRGGPGNTDKLIF_ 1 4322 NEF-136-145 FLU 0.55 9 NEG 122 4200 1 InfluenzaA NEF PLTFGWCYKL Naive T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*02:01 B2M MHCI -9016 chip0423_298478 12.18 8.67 Chip2 T1D_5 T1D TGCAGCGTTGGAACAAGCTATGGCTACACCTTC CSVGTSYGYTF TRBV29-1*01 TRBJ1-2*01 78.0 5209.0 _CSVGTSYGYTF 6 3459 BZLF1-190-197 EBV 1.0 2156 NEG 127 3332 10 EBV BZLF1 RAKFKQLL effector memory T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-B*08:01 B2M MHCI -9017 chip0423_34417 5.88 13.77 Chip2 healthy_3 healthy TGTGCCGTGTACAGCAGTGCTTCCAAGATAATCTTT CAVYSSASKIIF TRAV12-2*01 TRAJ3*01 5.0 264.0 TGCAGTGCTAGAGAGGCCCCTCTCCTCAAGGATAGCAATGACCAGTTCTTC CSAREAPLLKDSNDQFF TRBV20-1*01 TRBJ2-1*01 4.0 114.0 CAVYSSASKIIF_CSAREAPLLKDSNDQFF 1 6045 NP44-52 FLU 0.82 474 NP44-52 148 5897 7 InfluenzaA NP CTELKLSDY transitional T cells between effector and memory populations PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*01:01 B2M MHCI -9018 chip0423_529780 -4.52 9.68 Chip2 T1D_6 T1D TGTGCCAGCAGTTTAGGAGGGGTCATACTCACAGATACGCAGTATTTT CASSLGGVILTDTQYF TRBV28*01 TRBJ2-3*01 16.0 607.0 _CASSLGGVILTDTQYF 1 5331 GFAP-ALD-9 GFAP 0.84 11 GFAP-ALD-9 151 5180 2 HomoSapiens GFAP ALDIEIATY Naive T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*01:01 B2M MHCI -9019 chip0423_831498 -1.74 8.97 Chip2 healthy_3 healthy TGTGCCGTGATGGTGTATGGAAAGCTGACATTT CAVMVYGKLTF TRAV12-2*01 TRAJ52*01 6.0 460.0 CAVMVYGKLTF_ 1 7588 PGT-178 PGT 0.69 1480 NEG 117 7471 3 HomoSapiens PGT LLAGIGTVPI Naive T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*02:01 B2M MHCI -9020 chip0423_417507 5.08 11.56 Chip2 healthy_4 healthy _ 6746 3564 M1 FLU 1.0 1250 NEG 149 3415 6 InfluenzaA M1 GILGFVFTL central memory T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*02:01 B2M MHCI -9021 chip0423_298365 5.95 12.43 Chip2 healthy_3 healthy TGCAGTGCCGATTCCTACCGGGACATTGATAACTATGGCTACACCTTC CSADSYRDIDNYGYTF TRBV20-1*01 TRBJ1-2*01 26.0 1391.0 _CSADSYRDIDNYGYTF 8 5828 NP44-52 FLU 0.78 474 NP44-52 138 5690 7 InfluenzaA NP CTELKLSDY transitional T cells between effector and memory populations PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*01:01 B2M MHCI -9022 chip0423_120990 8.85 8.58 Chip2 T1D_5 T1D TGCATCCTCCAGCAACACAGGCAAACTGATCTTT CILQQca??caGKLIF TRAV26-2*01 TRAJ37*01 19.0 2081.0 TGTGCCAGCCGCTTGCTTGGGTCAGGGCTGGGCAGCACCATATATTTT CASRLLGSGLGSTIYF TRBV7-9*01 TRBJ1-3*01 4.0 64.0 CILQQca??caGKLIF_CASRLLGSGLGSTIYF 1 5679 BZLF1-190-197 EBV 0.83 2156 NEG 149 5530 8 EBV BZLF1 RAKFKQLL effector memory T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-B*08:01 B2M MHCI -9023 chip0423_18968 13.19 8.87 Chip2 T1D_5 T1D TGTGCCAGCAGCCCTCTTGGGAGCAATGAAAAACTGTTTTTT CASSPLGSNEKLFF TRBV7-9*01 TRBJ1-4*01 17.0 585.0 _CASSPLGSNEKLFF 20 1891 BZLF1-190-197 EBV 0.8 2156 NEG 127 1764 10 EBV BZLF1 RAKFKQLL effector memory T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-B*08:01 B2M MHCI -9024 chip0423_500448 11.62 10.87 Chip2 T1D_4 T1D TGTGCAGCAAGCCTTGATAACACCGACAAGCTCATCTTT CAASLDNTDKLIF TRAV29/DV5*01 TRAJ34*01 27.0 1588.0 TGTGCCAGCACCCCGGACGGGAGACAGGTTCAGCCCCAGCATTTT CASTPDGRQVQPQHF TRBV27*01 TRBJ1-5*01 93.0 3502.0 CAASLDNTDKLIF_CASTPDGRQVQPQHF 1 4111 BZLF1-190-197 EBV 0.57 2156 NEG 152 3959 9 EBV BZLF1 RAKFKQLL effector memory T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-B*08:01 B2M MHCI -9025 chip0423_306530 14.28 10.17 Chip2 healthy_4 healthy _ 6746 3552 BZLF1-190-197 EBV 1.0 2156 NEG 144 3408 12 EBV BZLF1 RAKFKQLL effector T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-B*08:01 B2M MHCI -9026 chip0423_505194 11.96 7.76 Chip2 T1D_5 T1D TATGCCAGCAGCCCTCTTGGGAGCAATGAAAAACTGTTTTTT YASSPLGSNEKLFF TRAV20*01,TRAV36/DV7*01 TRAJ5*01 2.0 4.0 TGTGCCAGCAGCCCTCTTGGGAGCAATGAAAAACTGTTTTTT CASSPLGSNEKLFF TRBV7-9*01 TRBJ1-4*01 62.0 2001.0 YASSPLGSNEKLFF_CASSPLGSNEKLFF 1 3881 BZLF1-190-197 EBV 1.0 2156 NEG 125 3756 10 EBV BZLF1 RAKFKQLL effector memory T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-B*08:01 B2M MHCI -9027 chip0423_487441 -3.5 9.87 Chip2 T1D_5 T1D TGTGCCGTGAGCCCCTATAACACCAACAAGCTCATCTTT CAVSPYNTNKLIF TRAV12-2*01 TRAJ34*01 54.0 2523.0 TGTGCCAGCAGCCTCCTTGGGGATGTTCGGGAAAAACTGTTTTTT CASSLLGDVREKLFF TRBV9*01 TRBJ1-4*01 1.0 60.0 CAVSPYNTNKLIF_CASSLLGDVREKLFF 1 5720 Gag260-267 HIV 0.5 10 NEG 137 5583 2 HIV-1 Gag EIYKRWII Naive T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-B*08:01 B2M MHCI -9028 chip0423_75806 7.33 11.7 Chip2 healthy_3 healthy TGTGCCAGCACGGGGACTAGCGATAGCACAGATACGCAGTATTTT CASTGTSDSTDTQYF TRBV2*01 TRBJ2-3*01 39.0 2327.0 _CASTGTSDSTDTQYF 9 6466 NP44-52 FLU 0.73 474 NP44-52 128 6338 7 InfluenzaA NP CTELKLSDY transitional T cells between effector and memory populations PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*01:01 B2M MHCI -9029 chip0423_832429 7.4 14.04 Chip2 healthy_3 healthy TGTGCTGTGCAGGCCGCGGGGCACCGGTAACCGGTTCTGTTTT CAVQAAG??cTGNRFCF TRAV20*01 TRAJ49*01 31.0 1950.0 CAVQAAG??cTGNRFCF_ 1 4453 NP44-52 FLU 0.59 474 NP44-52 115 4338 7 InfluenzaA NP CTELKLSDY transitional T cells between effector and memory populations PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*01:01 B2M MHCI -9030 chip0423_520481 5.84 10.91 Chip2 T1D_6 T1D TGCGCCAGCAGTGACATTAGGGAGGGGCAGGGTGAAGCTTTCTTT CASSDIREGQGEAFF TRBV10-2*01 TRBJ1-1*01 3.0 72.0 _CASSDIREGQGEAFF 37 7946 EBNA3A-158-166 EBV 0.8 444 NEG 157 7789 6 EBV EBNA3A QAKWRLQTL central memory T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-B*08:01 B2M MHCI -9031 chip0423_474258 8.03 11.44 Chip2 healthy_3 healthy TGTGCCAGCAGCCAAGACCAAATAACGGAAGGGGGGAACTATGGCTACACCTTC CASSQDQITEGGNYGYTF TRBV3-1*01 TRBJ1-2*01 39.0 1368.0 _CASSQDQITEGGNYGYTF 2 4707 IGRP-265-273 IGRP 0.65 34 IGRP-265-273 125 4582 7 HomoSapiens IGRP VLFGLGFAI transitional T cells between effector and memory populations PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*02:01 B2M MHCI -9032 chip0423_418373 -3.06 13.06 Chip2 healthy_3 healthy TGCAGTGCTAGAGGCGGGGGCGGGTACAATGAGCAGTTCTTC CSARGGGGYNEQFF TRBV20-1*01 TRBJ2-1*01 37.0 1994.0 _CSARGGGGYNEQFF 1 3929 PGT-178 PGT 0.61 1480 NEG 126 3803 1 HomoSapiens PGT LLAGIGTVPI Naive T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*02:01 B2M MHCI -9033 chip0423_471335 10.62 9.94 Chip2 healthy_4 healthy TGTGCCGTGAAGGACACCGACAAGCTCATCTTT CAVKDTDKLIF TRAV8-1*01 TRAJ34*01 22.0 2061.0 TGTGCCAGCAGTTACTCGGCAGGGTTCACCGGGGAGCTGTTTTTT CASSYSAGFTGELFF TRBV6-5*01 TRBJ2-2*01 15.0 688.0 CAVKDTDKLIF_CASSYSAGFTGELFF 1 4788 EBV-BRLF1 EBV 0.96 1264 EBV-BRLF1 126 4662 9 EBV BRLF1 YVLDHLIVV effector memory T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*02:01 B2M MHCI -9034 chip0423_91421 -3.86 9.16 Chip2 T1D_6 T1D TGTGCTTCGGGCCAATCAGGATACAGCACCCTCACCTGT CASGQSGYSTLTC TRAV17*01 TRAJ11*01 19.0 736.0 TGTGCCAGCAGCTTAGGAGGGGCGGAGACCCAGTACTTC CASSLGGAETQYF TRBV7-9*01 TRBJ2-5*01 21.0 1772.0 CASGQSGYSTLTC_CASSLGGAETQYF 1 6519 ZNT8-VTD-9 ZNT8 0.93 65 ZNT8-VTD-9 136 6383 2 HomoSapiens ZNT8 VTDAAHLLI Naive T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*01:01 B2M MHCI -9035 chip0423_671791 -2.84 7.57 Chip2 T1D_4 T1D TGTGCCGCAGCAGCCACCTACACCTACATCTTT CAAAATYTYIF TRAV12-1*01 TRAJ40*01 6.0 598.0 TGTGCCGTGGATGGGAATTACGACACTGAAGCTTTCTTT CAVDGNYDTEAFF TRBV19*01 TRBJ1-1*01 8.0 361.0 CAAAATYTYIF_CAVDGNYDTEAFF 1 6788 MART1-ALA MART1 0.62 269 NEG 126 6662 2 HomoSapiens MART1 ALAGIGILTV Naive T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*02:01 B2M MHCI -9036 chip0423_390474 7.31 13.2 Chip2 T1D_6 T1D TGTACAGTGGCGACCATGGCTCTAGCAACACACGCACGCTGTTCTTT CTVATMAct?SNTRTLFF TRAV22*01 TRAJ37*01 7.0 274.0 CTVATMAct?SNTRTLFF_ 1 3800 NP380-388 FLU 0.71 60 NEG 146 3654 7 InfluenzaA NP ELRSRYWAI transitional T cells between effector and memory populations PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-B*08:01 B2M MHCI -9037 chip0423_359108 5.53 12.99 Chip2 healthy_3 healthy TGTGCCAGCAGTGAAATGTGGGGAGCACCCCTCCACTTT CASSEMWGAPLHF TRBV2*01 TRBJ1-6*01 22.0 1239.0 _CASSEMWGAPLHF 14 6559 NP44-52 FLU 0.87 474 NP44-52 151 6408 7 InfluenzaA NP CTELKLSDY transitional T cells between effector and memory populations PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*01:01 B2M MHCI -9038 chip0423_542998 11.21 8.36 Chip2 T1D_4 T1D TGTGCTATTTACATGGATACCCACTATGCGTTCATCTGG CAIYMDTHYAFIW TRAV12-3*01 TRAJ33*01 6.0 247.0 TGTGCCAGCAGCCAACTCATGTTCCCAGATACGCAGTATTTT CASSQLMFPDTQYF TRBV7-2*01 TRBJ2-3*01 87.0 4162.0 CAIYMDTHYAFIW_CASSQLMFPDTQYF 1 5186 BZLF1-190-197 EBV 0.71 2156 NEG 150 5036 10 EBV BZLF1 RAKFKQLL effector memory T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-B*08:01 B2M MHCI -9039 chip0423_126702 10.25 10.38 Chip2 healthy_3 healthy TGTGCCCGGCCGCGGGACCGGGGGCTCCCTGAGCAGTTCTTC CARPRDRGLPEQFF TRBV6-2*01,TRBV6-3*01 TRBJ2-1*01 3.0 190.0 _CARPRDRGLPEQFF 1 5923 ZNT8-VTD-9 ZNT8 0.91 65 ZNT8-VTD-9 106 5817 9 HomoSapiens ZNT8 VTDAAHLLI effector memory T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*01:01 B2M MHCI -9040 chip0423_573570 -3.12 8.99 Chip2 T1D_5 T1D TGCGCCAGCAGCCAACCCGGACAGATTGTGCTGTTTTTT CASSQPGQIVLFF TRBV4-1*01 TRBJ2-2*01 83.0 3140.0 _CASSQPGQIVLFF 1 5122 EBNA3A-158-166 EBV 0.5 444 NEG 147 4975 2 EBV EBNA3A QAKWRLQTL Naive T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-B*08:01 B2M MHCI -9041 chip0423_812098 -3.16 12.68 Chip2 T1D_6 T1D _ 6746 4377 PGT-178 PGT 0.75 1480 PGT-178 141 4236 1 HomoSapiens PGT LLAGIGTVPI Naive T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*02:01 B2M MHCI -9042 chip0423_711037 -1.39 10.38 Chip2 T1D_6 T1D TGTGTAGCGAGAACTGGAGGGTTCGAAGCTATCTTT CVARTGGFEAIF TRAV5*01 TRAJ9*01 8.0 1144.0 TGTGCCAGCAGCTCAGCTGGGTTGAGCAATCAGCCCCAGCATTTT CASSSAGLSNQPQHF TRBV7-9*01 TRBJ1-5*01 114.0 3720.0 CVARTGGFEAIF_CASSSAGLSNQPQHF 1 6849 gp160-586-593 HIV 0.8 30 gp160-586-593 145 6704 3 HIV-1 gp160 YLKDQQLL Naive T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-B*08:01 B2M MHCI -9043 chip0423_537913 15.3 8.94 Chip2 T1D_6 T1D TGCATCCTCCCACTTGCTGGTGGTACTAGCTATGGAAAGCTGACATTT CILPLAGGTSYGKLTF TRAV26-2*01 TRAJ52*01 44.0 2249.0 TGTGCCAGCAGCTTGGGACAGGCCTACGAGCAGTACTTC CASSLGQAYEQYF TRBV7-8*01 TRBJ2-7*01 14.0 619.0 CILPLAGGTSYGKLTF_CASSLGQAYEQYF 308 5133 EBNA3A-193-201 EBV 0.85 1022 EBNA3A-193-201 138 4995 12 EBV EBNA3A FLRGRAYGL effector T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-B*08:01 B2M MHCI -9044 chip0423_13372 8.59 13.81 Chip2 healthy_4 healthy TGGGCTCTCCTACAGCTGAGTACATCTTCGCCGGTTTTTACTTT WALLQLSa?cIFAGFYF TRAV9-2*01 TRAJ21*01 3.0 113.0 WALLQLSa?cIFAGFYF_ 1 1371 M1 FLU 0.83 1250 NEG 138 1233 11 InfluenzaA M1 GILGFVFTL effector T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*02:01 B2M MHCI -9045 chip0423_479139 -2.91 9.18 Chip2 healthy_3 healthy TGTGCCATGCTCCGGTCTCTCGGAAGCACCATATATTT CAMLRSc?tRKHHIF TRBV12-3*01,TRBV12-4*01 TRBJ1-3*01 9.0 731.0 _CAMLRSc?tRKHHIF 1 4572 ZNT8-173-181 ZNT8 0.71 27 NEG 130 4442 2 HomoSapiens ZNT8 IQATVMIIV Naive T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*02:01 B2M MHCI -9046 chip0423_247031 7.31 11.96 Chip2 healthy_3 healthy _ 6746 5958 NP44-52 FLU 0.56 474 NP44-52 132 5826 7 InfluenzaA NP CTELKLSDY transitional T cells between effector and memory populations PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*01:01 B2M MHCI -9047 chip0423_782014 6.8 9.88 Chip2 healthy_3 healthy TGTGCCAGCAGTGAAATGTGGGGAGCACCCCTCCACTTT CASSEMWGAPLHF TRBV2*01 TRBJ1-6*01 33.0 2155.0 _CASSEMWGAPLHF 14 6934 NP44-52 FLU 0.88 474 NP44-52 122 6812 7 InfluenzaA NP CTELKLSDY transitional T cells between effector and memory populations PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*01:01 B2M MHCI -9048 chip0423_467961 13.25 9.46 Chip2 healthy_4 healthy TGTGCTGTGGAGGATCAAGGGAGATCTTATAACACCGACAAGCTCATCTTT CAVEDQGRSYNTDKLIF TRAV2*01 TRAJ34*01 82.0 1907.0 TGTGCTGTGGAGAAGAAGAACACCGACAAGCTCATCTTT CAVEKKNTDKLIF TRAV21*01 TRAJ34*01 45.0 1956.0 0.27 TGTGCCAGCAGCTTAAACGTCGGGGAGGGCGCAGGAAACACCATATATTTT CASSLNVGEGAGNTIYF TRBV7-6*01 TRBJ1-3*01 24.0 594.0 CAVEDQGRSYNTDKLIF_CASSLNVGEGAGNTIYF 10 4316 BZLF1-190-197 EBV 0.64 2156 NEG 142 4174 10 EBV BZLF1 RAKFKQLL effector memory T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-B*08:01 B2M MHCI -9049 chip0423_175811 10.69 9.23 Chip2 T1D_4 T1D TGTGCCAGCAGCAGAATCCCGGGGCAGGGGGCCCGACCGGATCCGAACACCGGGGAGCTGTTTTTT CASSRIPGQGARPDPNTGELFF TRBV28*01 TRBJ2-2*01 4.0 34.0 _CASSRIPGQGARPDPNTGELFF 6 5064 EBV-LMP2A EBV 0.45 700 NEG 138 4926 9 EBV LMP2A CLGGLLTMV effector memory T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*02:01 B2M MHCI -9050 chip0423_27766 -1.08 9.28 Chip2 T1D_6 T1D TGTGCAGAGAGTGGTGCTGGCAACAACCGTAAGCTGATTTGG CAESGAGNNRKLIW TRAV5*01 TRAJ38*01 1.0 11.0 TGTGCCAGCTGGGGCCCGAGAGTAGAAAAACTGTTTTTT CASWGPRVEKLFF TRBV2*01 TRBJ1-4*01 24.0 937.0 CAESGAGNNRKLIW_CASWGPRVEKLFF 1 6599 gp160-586-593 HIV 0.69 30 gp160-586-593 151 6448 3 HIV-1 gp160 YLKDQQLL Naive T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-B*08:01 B2M MHCI -9051 chip0423_579459 10.26 7.01 Chip2 T1D_5 T1D TGTGCCAGCTCACCACCGGGTGGGGGCAACACCGGGGAGCTGTTTTTT CASSPPGGGNTGELFF TRBV18*01 TRBJ2-2*01 3.0 198.0 _CASSPPGGGNTGELFF 4 3622 BZLF1-190-197 EBV 0.77 2156 BZLF1-190-197 130 3492 10 EBV BZLF1 RAKFKQLL effector memory T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-B*08:01 B2M MHCI -9052 chip0423_494627 5.34 12.32 Chip2 T1D_4 T1D _ 6746 5202 EBV-LMP1-1 EBV 0.67 237 NEG 138 5064 7 EBV LMP1 YLLEMLWRL transitional T cells between effector and memory populations PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*02:01 B2M MHCI -9053 chip0423_50378 13.15 7.62 Chip2 T1D_6 T1D TGCATCCTCCCACTTGCTGGTGGTACTAGCTATGGAAAGCTGACATTT CILPLAGGTSYGKLTF TRAV26-2*01 TRAJ52*01 51.0 2152.0 TGTGCCAGCAGCTTGGGACAGGCCTACGAGCAGTACTTC CASSLGQAYEQYF TRBV7-8*01 TRBJ2-7*01 9.0 418.0 CILPLAGGTSYGKLTF_CASSLGQAYEQYF 308 3338 EBNA3A-193-201 EBV 0.62 1022 NEG 164 3174 10 EBV EBNA3A FLRGRAYGL effector memory T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-B*08:01 B2M MHCI -9054 chip0423_695179 11.59 10.43 Chip2 healthy_3 healthy TGTGCTGTTCTCCCCTCTAACGACTACAAGCTCAGCTTT CAVLPSNDYKLSF TRAV12-3*01 TRAJ20*01 29.0 2182.0 CAVLPSNDYKLSF_ 2 5981 NP44-52 FLU 0.59 474 NP44-52 115 5866 9 InfluenzaA NP CTELKLSDY effector memory T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*01:01 B2M MHCI -9055 chip0423_686724 -3.21 11.1 Chip2 T1D_4 T1D TGTGCCAGTAGTATTTCTGATGAGGGGGCAAATTACTATGGCCACACCTTC CASSISDEGANYYGHTF TRBV19*01 TRBJ1-2*01 21.0 757.0 _CASSISDEGANYYGHTF 1 5071 NP44-52 FLU 0.58 474 NEG 137 4934 4 InfluenzaA NP CTELKLSDY Naive T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*01:01 B2M MHCI -9056 chip0423_549298 12.79 6.79 Chip2 T1D_5 T1D TGTGCAGCAGCGGAAACCTCCTACGACAAGGTGATATTT CAAAETSYDKVIF TRAV13-1*01 TRAJ50*01 17.0 2044.0 TGTGCCAGCAGCGCCTTGGGGCAGACACACACTGAAGCTTTCTTT CASSALGQTHTEAFF TRBV7-9*01 TRBJ1-1*01 12.0 406.0 CAAAETSYDKVIF_CASSALGQTHTEAFF 2 4188 BZLF1-190-197 EBV 0.52 2156 BZLF1-190-197 170 4018 10 EBV BZLF1 RAKFKQLL effector memory T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-B*08:01 B2M MHCI -9057 chip0423_531589 11.92 9.5 Chip2 T1D_6 T1D TGCAGCGCCGGCAGGGACGGGACTAATGAAAAACTGTCTTTT CSAGRDGTNEKLSF TRBV29-1*01 TRBJ1-4*01 67.0 3447.0 _CSAGRDGTNEKLSF 1 5063 EBV-BLMF1 EBV 0.7 2531 NEG 157 4906 10 EBV BLMF1 GLCTLVAML effector memory T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*02:01 B2M MHCI -9058 chip0423_529580 -3.47 6.83 Chip2 T1D_6 T1D TGTGCTGTGGTCCATCCACTGTATGGCGGTGCTACAAACAAGCTCATCTTT CAVVHPLYGGATNKLIF TRAV8-3*01 TRAJ32*01 33.0 711.0 TGTGCCAGCAGCCAAGAACTCCGGGGAAGCACAGATACGCAGTATTTT CASSQELRGSTDTQYF TRBV14*01 TRBJ2-3*01 21.0 660.0 CAVVHPLYGGATNKLIF_CASSQELRGSTDTQYF 1 8886 GFAP-HLK-8 GFAP 0.64 28 GFAP-HLK-8 123 8763 2 HomoSapiens GFAP HLKRNIVV Naive T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-B*08:01 B2M MHCI -9059 chip0423_199731 14.11 8.19 Chip2 healthy_3 healthy _ 6746 3767 GAD65-114-122 GAD65 0.64 63 GAD65-114-122 155 3612 10 HomoSapiens GAD65 VMNILLQYV effector memory T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*02:01 B2M MHCI -9060 chip0423_9773 14.2 10.32 Chip2 T1D_5 T1D TGTGCAGCAACGGAAACCTCCTACGACAAGGTGATATTT CAATETSYDKVIF TRAV13-1*01 TRAJ50*01 27.0 1902.0 TGTGACAGCAGCCTATTAGGAGTACGGGACAGGGAAAACGAGCAGTACTTC CDSSLLGVRDRENEQYF TRBV11-1*01 TRBJ2-7*01 21.0 715.0 CAATETSYDKVIF_CDSSLLGVRDRENEQYF 1 3321 BZLF1-190-197 EBV 0.67 2156 NEG 139 3182 12 EBV BZLF1 RAKFKQLL effector T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-B*08:01 B2M MHCI -9061 chip0423_443674 8.86 9.07 Chip2 healthy_3 healthy TGTGCCGTGAAGGAGGGAGGAAAGCTTATCTTC CAVKEGGKLIF TRAV8-1*01 TRAJ23*01 1.0 14.0 CAVKEGGKLIF_ 5 8710 EBV-BRLF1 EBV 0.78 1264 EBV-BRLF1 142 8568 8 EBV BRLF1 YVLDHLIVV effector memory T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*02:01 B2M MHCI -9062 chip0423_572069 -2.11 10.5 Chip2 healthy_3 healthy TGTGCAATGAGCCTATCTAACTTTGGAAATGAGAAATTAACCTTT CAMSLSNFGNEKLTF TRAV12-3*01 TRAJ48*01 48.0 2023.0 TGTGCCAGCAGCCGAAGACAGGCTCAAGAGACCCAGTACTTC CASSRRQAQETQYF TRBV11-1*01 TRBJ2-5*01 26.0 955.0 CAMSLSNFGNEKLTF_CASSRRQAQETQYF 1 6672 PGT-178 PGT 0.89 1480 PGT-178 121 6551 3 HomoSapiens PGT LLAGIGTVPI Naive T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*02:01 B2M MHCI -9063 chip0423_358760 13.41 11.81 Chip2 T1D_5 T1D TGTGCCAGCAGTGGACGTGTAGAGGAATACGGCGGGGAGCTGTTTTTT CASSGRVEEYGGELFF TRBV27*01 TRBJ2-2*01 19.0 717.0 _CASSGRVEEYGGELFF 6 2096 BZLF1-190-197 EBV 0.5 2156 NEG 123 1973 9 EBV BZLF1 RAKFKQLL effector memory T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-B*08:01 B2M MHCI -9064 chip0423_528131 11.89 7.05 Chip2 healthy_4 healthy TGTGCCAGCAGCTTAAACGTCGGGGAGGGCGCAGGAAACACCATATATTTT CASSLNVGEGAGNTIYF TRBV7-6*01 TRBJ1-3*01 40.0 1402.0 _CASSLNVGEGAGNTIYF 9 4649 BZLF1-190-197 EBV 0.8 2156 BZLF1-190-197 161 4488 10 EBV BZLF1 RAKFKQLL effector memory T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-B*08:01 B2M MHCI -9065 chip0423_365414 12.26 13.04 Chip2 T1D_5 T1D AGGATCCTGAGAGAACTACGGGTATGGGATCGACTTC RILREL??cGYGIDF TRAV26-2*01 TRAJ41*01 10.0 1458.0 TGTGCCAGCAGCCAATTGGGGGAGGCGAAGGAAGGCACTGAAGCTTTCTTT CASSQLGEAKEGTEAFF TRBV11-1*01 TRBJ1-1*01 26.0 1092.0 RILREL??cGYGIDF_CASSQLGEAKEGTEAFF 1 2921 BZLF1-190-197 EBV 0.44 2156 NEG 140 2781 11 EBV BZLF1 RAKFKQLL effector T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-B*08:01 B2M MHCI -9066 chip0423_613780 10.55 12.33 Chip2 T1D_5 T1D TGTGCTCTTTGTGACAGAGGCTCAACCCTGGGGAGGCTATACTTT CALCDRGSTLGRLYF TRAV19*01 TRAJ18*01 36.0 1985.0 TGTGCCAGCAGCTTAGGACGTGAAATCGGGCCCATCGAGCAGTTCTTC CASSLGREIGPIEQFF TRBV7-8*01 TRBJ2-1*01 42.0 1568.0 CALCDRGSTLGRLYF_CASSLGREIGPIEQFF 4 3002 BZLF1-190-197 EBV 0.75 2156 BZLF1-190-197 112 2890 7 EBV BZLF1 RAKFKQLL transitional T cells between effector and memory populations PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-B*08:01 B2M MHCI -9067 chip0423_67909 7.52 12.42 Chip2 healthy_3 healthy _ 6746 3956 NP44-52 FLU 0.77 474 NP44-52 123 3833 7 InfluenzaA NP CTELKLSDY transitional T cells between effector and memory populations PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*01:01 B2M MHCI -9068 chip0423_27300 11.82 9.58 Chip2 healthy_4 healthy TGTGCTGTGGAGGATCAAGGGAGATCTTGTGTCACCGACCAGCTCATCTCT CAVEDQGRSCVTDQLIS TRAV2*01 TRAJ34*01 15.0 213.0 CAVEDQGRSCVTDQLIS_ 1 3881 BZLF1-190-197 EBV 0.91 2156 NEG 119 3762 10 EBV BZLF1 RAKFKQLL effector memory T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-B*08:01 B2M MHCI -9069 chip0423_459623 -4.23 9.87 Chip2 healthy_3 healthy _ 6746 5065 MART1-ALA MART1 0.61 269 NEG 111 4954 2 HomoSapiens MART1 ALAGIGILTV Naive T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*02:01 B2M MHCI -9070 chip0423_390856 13.79 13.03 Chip2 T1D_4 T1D TGTGCCAGCAGCTTAGCGGTCGGAGAAGGGCCCCAGCATTTT CASSLAVGEGPQHF TRBV7-9*01 TRBJ1-5*01 21.0 1052.0 _CASSLAVGEGPQHF 113 1796 BZLF1-190-197 EBV 0.82 2156 NEG 136 1660 12 EBV BZLF1 RAKFKQLL effector T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-B*08:01 B2M MHCI -9071 chip0423_10224 9.82 10.29 Chip2 T1D_5 T1D TGTGCAATGAGAGAGGGCGAGGCTGGAGGCTTCAAAACTATCTTT CAMREGEAGGFKTIF TRAV14/DV4*01 TRAJ9*01 66.0 2072.0 TGTGCCAGCAGCCCCCTTGCAGGGACTCAGCAGTACTTC CASSPLAGTQQYF TRBV14*01 TRBJ2-7*01 2.0 170.0 CAMREGEAGGFKTIF_CASSPLAGTQQYF 1 4025 BZLF1-190-197 EBV 0.62 2156 NEG 139 3886 9 EBV BZLF1 RAKFKQLL effector memory T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-B*08:01 B2M MHCI -9072 chip0423_453192 6.06 13.64 Chip2 healthy_3 healthy _ 6746 5326 MART1-A28L MART1 0.82 84 NEG 119 5207 7 HomoSapiens MART1 ALGIGILTV transitional T cells between effector and memory populations PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*02:01 B2M MHCI -9073 chip0423_841452 6.68 12.22 Chip2 healthy_3 healthy TGTGCCTGGAGTGACTACAAGGACAAAAACTATGGCTACACCTTC CAWSDYKDKNYGYTF TRBV30*01 TRBJ1-2*01 39.0 1347.0 _CAWSDYKDKNYGYTF 1 7190 NP44-52 FLU 0.84 474 NP44-52 146 7044 7 InfluenzaA NP CTELKLSDY transitional T cells between effector and memory populations PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*01:01 B2M MHCI -9074 chip0423_654460 11.73 9.17 Chip2 T1D_4 T1D TGCGCCTCAGACCGAGATTCAGGATACACACCTCTTGTCTGT CASDRDSGYTPLVC TRAV30*01 TRAJ29*01 24.0 1163.0 TGTGCCAGCAGCTGGGGCCCTGAAGCTTTCTTT CASSWGPEAFF TRBV7-9*01 TRBJ1-1*01 45.0 2875.0 CASDRDSGYTPLVC_CASSWGPEAFF 1 4120 EBNA3A-193-201 EBV 0.93 1022 EBNA3A-193-201 150 3970 10 EBV EBNA3A FLRGRAYGL effector memory T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-B*08:01 B2M MHCI -9075 chip0423_576866 6.1 12.69 Chip2 healthy_3 healthy TGCGCTGATTACAGCAGTGCTTCCAAGATAATCTTT CADYSSASKIIF TRAV1-1*01 TRAJ3*01 25.0 1993.0 CADYSSASKIIF_ 2 7397 NP44-52 FLU 0.64 474 NEG 133 7264 7 InfluenzaA NP CTELKLSDY transitional T cells between effector and memory populations PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*01:01 B2M MHCI -9076 chip0423_541283 7.25 13.34 Chip2 T1D_4 T1D TGTGCCAGTAGTTCCCGATCCGCAATTGAGCAGTTCTTC CASSSRSAIEQFF TRBV19*01 TRBJ2-1*01 1.0 75.0 _CASSSRSAIEQFF 1 4094 M1 FLU 0.55 1250 M1 120 3974 7 InfluenzaA M1 GILGFVFTL transitional T cells between effector and memory populations PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*02:01 B2M MHCI -9077 chip0423_472430 14.47 10.72 Chip2 T1D_4 T1D TGTGCCAGCAGCTTAGCGGTCGGAGAAGGGCCCCAGCATTTT CASSLAVGEGPQHF TRBV7-9*01 TRBJ1-5*01 17.0 530.0 _CASSLAVGEGPQHF 113 5439 BZLF1-190-197 EBV 0.81 2156 BZLF1-190-197 162 5277 12 EBV BZLF1 RAKFKQLL effector T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-B*08:01 B2M MHCI -9078 chip0423_187149 14.92 10.5 Chip2 T1D_5 T1D TGTGCAGAGACGGAAACCTCCTACGACAAGGTGATATTT CAETETSYDKVIF TRAV13-2*01 TRAJ50*01 9.0 1042.0 TGTGCCAGCAGCTTCACTAGCGGGACAGATCCTGAGCTGTTTTTT CASSFTSGTDPELFF TRBV7-9*01 TRBJ2-2*01 48.0 2213.0 CAETETSYDKVIF_CASSFTSGTDPELFF 9 3604 BZLF1-190-197 EBV 0.62 2156 NEG 138 3466 12 EBV BZLF1 RAKFKQLL effector T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-B*08:01 B2M MHCI -9079 chip0423_143779 -1.1 8.71 Chip2 T1D_5 T1D TGTGCCAGCAGCTTAGTTCTTTCTAGCGCCAATGAGCAGTTCCTC CASSLVLSSANEQFL TRBV7-2*01 TRBJ2-1*01 16.0 734.0 _CASSLVLSSANEQFL 1 6399 ZNT8-VTD-9 ZNT8 0.8 65 ZNT8-VTD-9 129 6270 4 HomoSapiens ZNT8 VTDAAHLLI Naive T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*01:01 B2M MHCI -9080 chip0423_127452 -3.93 11.09 Chip2 T1D_4 T1D TGTGCTTTCATGAAGTAACTCAGTGGGTAGCAACTATAAACTGACATTT CAFMK*LS??gGSNYKLTF TRAV38-1*01 TRAJ53*01 1.0 12.0 TGTGCCAGCGGATATCCGAACACTGAAGCTTTCTTT CASGYPNTEAFF TRBV6-5*01,TRBV6-1*01 TRBJ1-1*01 27.0 1248.0 CAFMK*LS??gGSNYKLTF_CASGYPNTEAFF 1 4724 ZNT8-VTD-9 ZNT8 0.93 65 ZNT8-VTD-9 123 4601 2 HomoSapiens ZNT8 VTDAAHLLI Naive T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*01:01 B2M MHCI -9081 chip0423_809626 -3.47 8.66 Chip2 T1D_4 T1D TGTGTGGGGTATATGAACACAGGCTTTCAGAAACTTGTATTT CVGYMNTGFQKLVF TRAV12-1*01 TRAJ8*01 1.0 10.0 TGTGCCAGCAGTGAGCTAGGGATGGATGAGCAGTTCTTC CASSELGMDEQFF TRBV6-4*01 TRBJ2-1*01 7.0 296.0 CVGYMNTGFQKLVF_CASSELGMDEQFF 1 5411 NP140-148 FLU 0.73 102 NP140-148 119 5292 2 InfluenzaA NP HSNLNDATY Naive T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*01:01 B2M MHCI -9082 chip0423_769389 12.15 7.91 Chip2 T1D_6 T1D TGTGCCAGCAGCTTGGGACAGGCCTACGAGCAGTACTTC CASSLGQAYEQYF TRBV7-8*01 TRBJ2-7*01 38.0 2112.0 _CASSLGQAYEQYF 175 3570 EBNA3A-193-201 EBV 0.42 1022 NEG 134 3436 10 EBV EBNA3A FLRGRAYGL effector memory T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-B*08:01 B2M MHCI -9083 chip0423_353714 -4.89 10.03 Chip2 T1D_6 T1D TGTGCAATGGCAATATCTAACTTTGGAAATGAGAAATTAACCTTT CAMAISNFGNEKLTF TRAV12-3*01 TRAJ48*01 1.0 29.0 TGTGCAGGGGGGTGGGGGGCGGCACTGCCAGTAAACTCACTTTT CAGGWGAg?cTASKLTF TRAV27*01 TRAJ44*01 1.0 40.0 0.5 TGCGCCAGCAGCCAAACAGGTTCCCTGAACACTGAAGCTTTCTTT CASSQTGSLNTEAFF TRBV4-1*01 TRBJ1-1*01 4.0 64.0 CAMAISNFGNEKLTF_CASSQTGSLNTEAFF 1 5262 PGT-178 PGT 0.58 1480 NEG 123 5139 2 HomoSapiens PGT LLAGIGTVPI Naive T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*02:01 B2M MHCI -9084 chip0423_191085 9.42 8.34 Chip2 T1D_5 T1D _ 6746 5239 BZLF1-190-197 EBV 0.94 2156 BZLF1-190-197 157 5082 8 EBV BZLF1 RAKFKQLL effector memory T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-B*08:01 B2M MHCI -9085 chip0423_185461 6.41 11.8 Chip2 healthy_3 healthy TGTGCCGTGATTACCGGCACTGCCAGTAAACTCACCTTT CAVITGTASKLTF TRAV12-2*01 TRAJ44*01 1.0 67.0 TGTGCCAGTAGTATCTCCCCGACAGGGGTTGAGCAGTACTTC CASSISPTGVEQYF TRBV19*01 TRBJ2-7*01 16.0 1046.0 CAVITGTASKLTF_CASSISPTGVEQYF 1 5567 PGT-178 PGT 0.89 1480 PGT-178 132 5435 7 HomoSapiens PGT LLAGIGTVPI transitional T cells between effector and memory populations PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*02:01 B2M MHCI -9086 chip0423_136389 9.39 9.07 Chip2 T1D_5 T1D TGTGCCAGCTCCCAGTTGGGGGGGGTTTACAATGAGCAGTTCTTC CASSQLGGVYNEQFF TRBV7-9*01 TRBJ2-1*01 48.0 2753.0 _CASSQLGGVYNEQFF 13 6088 BZLF1-190-197 EBV 0.6 2156 BZLF1-190-197 116 5972 8 EBV BZLF1 RAKFKQLL effector memory T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-B*08:01 B2M MHCI -9087 chip0423_131430 -4.16 10.29 Chip2 healthy_3 healthy TGTGCCAGCAGTCCTCAACTTTTGGGACAGCGGTCGGATGGCTACACCTTC CASSPQLLGQRSDGYTF TRBV12-3*01,TRBV12-4*01 TRBJ1-2*01 27.0 1619.0 _CASSPQLLGQRSDGYTF 1 4617 PGT-178 PGT 0.8 1480 PGT-178 136 4481 2 HomoSapiens PGT LLAGIGTVPI Naive T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*02:01 B2M MHCI -9088 chip0423_815344 -2.46 14.17 Chip2 T1D_4 T1D TGTGCAATGAGCGCGTCTAACTTTGGAAATGAGAAATTAACCTTT CAMSASNFGNEKLTF TRAV12-3*01 TRAJ48*01 163.0 6690.0 TGTGCCAGCAGCTCTGACAGGGCAAGTAACTCTGGGGCCAACGTCCTGACTTTC CASSSDRASNSGANVLTF TRBV5-5*01 TRBJ2-6*01 37.0 1399.0 CAMSASNFGNEKLTF_CASSSDRASNSGANVLTF 1 3126 PGT-178 PGT 0.64 1480 PGT-178 130 2996 1 HomoSapiens PGT LLAGIGTVPI Naive T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*02:01 B2M MHCI -9089 chip0423_443468 16.02 10.05 Chip2 healthy_3 healthy TGTGCTGTGGGTTCTCCTAATTATGGAGGAAGCCAAGGAAATCTCATCTTT CAVGSPNYGGSQGNLIF TRAV36/DV7*01 TRAJ42*01 130.0 3914.0 CAVGSPNYGGSQGNLIF_ 2 5842 NP44-52 FLU 0.73 474 NP44-52 127 5715 12 InfluenzaA NP CTELKLSDY effector T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*01:01 B2M MHCI -9090 chip0423_461326 10.79 7.72 Chip2 T1D_5 T1D TGTGCAGCAAGTGAAACCTCCTACGACAAGGTGATATTT CAASETSYDKVIF TRAV13-1*01 TRAJ50*01 47.0 2534.0 TGTGCCAGCAGCTGGCTCGGGGATCGGTATAATTCACCCCTCCACTTT CASSWLGDRYNSPLHF TRBV7-9*01 TRBJ1-6*01 14.0 373.0 CAASETSYDKVIF_CASSWLGDRYNSPLHF 65 3753 BZLF1-190-197 EBV 0.46 2156 NEG 128 3625 10 EBV BZLF1 RAKFKQLL effector memory T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-B*08:01 B2M MHCI -9091 chip0423_396711 -2.39 10.56 Chip2 T1D_5 T1D TGTGCAATGAGAGAGGGCGGGGTTTCTGGTGGCTACAATAAGCTGATTTTT CAMREGGVSGGYNKLIF TRAV14/DV4*01 TRAJ4*01 45.0 1457.0 CAMREGGVSGGYNKLIF_ 1 4371 G6PC2-NLI-8 IGRP 0.55 32 NEG 129 4242 3 HomoSapiens G6PC2 NLIFKWIL Naive T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-B*08:01 B2M MHCI -9092 chip0423_120212 15.49 8.72 Chip2 T1D_5 T1D TGTGCAGCAGAGGAAACCTCCTACGACAAGGTGATATTT CAAEETSYDKVIF TRAV13-1*01 TRAJ50*01 21.0 2326.0 TGTGCCAGCAGCTTACTCGGGGAGACTGAAAACACCATATATTTT CASSLLGETENTIYF TRBV7-9*01 TRBJ1-3*01 15.0 738.0 CAAEETSYDKVIF_CASSLLGETENTIYF 1 2910 BZLF1-190-197 EBV 0.8 2156 NEG 151 2759 12 EBV BZLF1 RAKFKQLL effector T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-B*08:01 B2M MHCI -9093 chip0423_3030 13.17 13.63 Chip2 T1D_5 T1D TGTGCCAGCAGCTCCTTAAGCGGGGGGGCAGGAAATGAGCAGTTCTTC CASSSLSGGAGNEQFF TRBV7-9*01 TRBJ2-1*01 18.0 1001.0 _CASSSLSGGAGNEQFF 33 1534 BZLF1-190-197 EBV 0.8 2156 NEG 127 1407 11 EBV BZLF1 RAKFKQLL effector T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-B*08:01 B2M MHCI -9094 chip0423_538178 -1.64 9.0 Chip2 healthy_3 healthy TGTGCCAGCAGTTCTATGAACACTGAAGCTTTCTTT CASSSMNTEAFF TRBV13*01 TRBJ1-1*01 13.0 492.0 _CASSSMNTEAFF 1 4834 ROTA-VP2-1 ROTA 0.56 17 NEG 128 4706 3 RotavirusA VP2 SLISGMWLL Naive T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*02:01 B2M MHCI -9095 chip0423_206389 7.46 12.29 Chip2 healthy_3 healthy TGCAGTGCGACCTCCTACCGGGACACCGACCGAAACACCATATATTTT CSATSYRDTDRNTIYF TRBV20-1*01 TRBJ1-3*01 28.0 1681.0 _CSATSYRDTDRNTIYF 1 5657 NP44-52 FLU 0.66 474 NP44-52 104 5553 7 InfluenzaA NP CTELKLSDY transitional T cells between effector and memory populations PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*01:01 B2M MHCI -9096 chip0423_855995 14.0 9.26 Chip2 T1D_4 T1D _ 6746 5212 ZNT8-LID-9 ZNT8 0.44 1 NEG 141 5071 12 HomoSapiens ZNT8 LIDLTSFLL effector T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*01:01 B2M MHCI -9097 chip0423_806065 -4.09 11.99 Chip2 T1D_6 T1D TGCATCGTCAGAGTCGGAGGTGGTACTAGCTATGGCAAGCTGACATTT CIVRVGGGTSYGKLTF TRAV26-1*01 TRAJ52*01 49.0 1954.0 TGTGCCAGCAGCGCGACACAGGGGTTGGGAAACATTCAGTACTTC CASSATQGLGNIQYF TRBV9*01 TRBJ2-4*01 14.0 774.0 CIVRVGGGTSYGKLTF_CASSATQGLGNIQYF 1 4612 GFAP-LRL-8 GFAP 0.57 18 NEG 114 4498 1 HomoSapiens GFAP LRLRLDQL Naive T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-B*08:01 B2M MHCI -9098 chip0423_819779 -0.73 9.83 Chip2 T1D_5 T1D TGTGCTCTGAACAAGGCAGGAAATGCTCTGATCTTT CALNKAGNALIF TRAV9-2*01 TRAJ15*01 2.0 203.0 TGTGCCAGCAGTTTATCGCCCGGGACAGCACATAACACCGGGGAGCTGTTTTTT CASSLSPGTAHNTGELFF TRBV27*01 TRBJ2-2*01 31.0 1099.0 CALNKAGNALIF_CASSLSPGTAHNTGELFF 1 5735 NP413-421 FLU 0.79 16 NP413-421 157 5578 3 InfluenzaA NP ALKCKGFHV Naive T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-B*08:01 B2M MHCI -9099 chip0423_724013 -1.06 10.17 Chip2 T1D_5 T1D TGTGCCAGCAGTTACGGGGCCAGACTGTCCACAGATACGCAGTATTTT CASSYGARLSTDTQYF TRBV6-5*01 TRBJ2-3*01 107.0 3966.0 _CASSYGARLSTDTQYF 1 5750 G6PC2-YVM-8 IGRP 0.71 8 G6PC2-YVM-8 130 5620 3 HomoSapiens G6PC2 YVMVTAAL Naive T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-B*08:01 B2M MHCI -9100 chip0423_493435 -3.54 12.98 Chip2 T1D_5 T1D TGCAGTGCTCACCTAAGGACTAGCCAGTACAATGAGCAGTTCTTC CSAHLRTSQYNEQFF TRBV20-1*01 TRBJ2-1*01 17.0 1381.0 _CSAHLRTSQYNEQFF 1 3764 EBNA3A-158-166 EBV 0.65 444 NEG 123 3641 1 EBV EBNA3A QAKWRLQTL Naive T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-B*08:01 B2M MHCI -9101 chip0423_472651 -2.43 7.63 Chip2 healthy_3 healthy TGTGCAATGAGTCGTTCAAACTTTGGAAATGAGAAATTAACCTTT CAMSRSNFGNEKLTF TRAV12-3*01 TRAJ48*01 65.0 2639.0 TGCAGCGTCCCCGGGGAGAGTAGTCCCGAAACCGACTATGGCTACACCTTC CSVPGESSPETDYGYTF TRBV29-1*01 TRBJ1-2*01 147.0 7553.0 CAMSRSNFGNEKLTF_CSVPGESSPETDYGYTF 1 5210 PGT-178 PGT 0.78 1480 PGT-178 120 5090 4 HomoSapiens PGT LLAGIGTVPI Naive T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*02:01 B2M MHCI -9102 chip0423_824674 11.58 12.66 Chip2 T1D_4 T1D TGTGCAATGGCCTTCAAGGGGGGCTTTGGGAATGTGCTGCCTTCCGGGTCCGGCACTCAAGTG CAMAFKGGFGNVLPSGSGTQV TRAV12-3*01 TRAJ41*01 2.0 55.0 TGTGCAATAGCCTTCAAGAGGGGCTTTGGGAATGTGCTGCCTTT CAIAFKRg?gLWECAAF TRAV12-3*01 TRAJ10*01 1.0 28.0 0.2 CAMAFKGGFGNVLPSGSGTQV_ 1 2613 BZLF1-190-197 EBV 0.71 2156 NEG 125 2488 11 EBV BZLF1 RAKFKQLL effector T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-B*08:01 B2M MHCI -9103 chip0423_658774 11.5 7.11 Chip2 T1D_6 T1D TGTGCTACGGCGGGGGGTTCCGGATGCAGGACCCTGACCTTT CATAGGSGCRTLTF TRAV17*01 TRAJ11*01 29.0 1159.0 CATAGGSGCRTLTF_ 1 6150 EBV-LMP2-FLY EBV 0.44 355 NEG 140 6010 10 EBV LMP2 FLYALALLL effector memory T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*02:01 B2M MHCI -9104 chip0423_452107 -3.55 7.15 Chip2 T1D_6 T1D TGTGCCAGCAGTTTAGGCCCTAATTCACCCCTCCACTTT CASSLGPNSPLHF TRBV12-3*01,TRBV12-4*01 TRBJ1-6*01 23.0 1419.0 _CASSLGPNSPLHF 1 10806 POL-132-140 HIV 0.56 37 POL-132-140 136 10670 2 HIV-1 POL LVGPTPVNI Naive T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*02:01 B2M MHCI -9105 chip0423_164091 -3.37 13.4 Chip2 T1D_4 T1D TGTGCAATGACCTTATCTAACTTTGGACATGAGAAATTAACCTTT CAMTLSNFGHEKLTF TRAV12-3*01 TRAJ48*01 46.0 1357.0 TGTGCCAGTAGTCCACGACAGGGGGCGGACGGAAACACCATATATTTT CASSPRQGADGNTIYF TRBV19*01 TRBJ1-3*01 45.0 1151.0 CAMTLSNFGHEKLTF_CASSPRQGADGNTIYF 1 3964 PGT-178 PGT 0.69 1480 NEG 125 3839 1 HomoSapiens PGT LLAGIGTVPI Naive T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*02:01 B2M MHCI -9106 chip0423_16827 6.11 13.17 Chip2 healthy_3 healthy TGCATCGTCAGAGTCCCCCACCCGACCGGCACTGCCAGTAAACTCACCTTT CIVRVPHPTGTASKLTF TRAV26-1*01 TRAJ44*01 64.0 2322.0 CTGTGCCAGTAGTACCTGCTGCTCCTACGAGCAGTACTTC LCQ*YLct??gcSYEQYF TRBV19*01 TRBJ2-7*01 2.0 104.0 CIVRVPHPTGTASKLTF_LCQ*YLct??gcSYEQYF 1 5091 M1 FLU 0.57 1250 NEG 122 4969 7 InfluenzaA M1 GILGFVFTL transitional T cells between effector and memory populations PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*02:01 B2M MHCI -9107 chip0423_706338 -2.24 12.48 Chip2 T1D_6 T1D TGTGCAATGACCATATCTAACTTTGGAGGTGCGTTCTTGCCCTTT CAMTISNFGGAFLPF TRAV12-3*01 TRAJ48*01 4.0 88.0 TGTGCCAGCACCTCTGACACGGGGCGATGGGAAAAACTGTTTTTT CASTSDTGRWEKLFF TRBV7-9*01 TRBJ1-4*01 40.0 1046.0 CAMTISNFGGAFLPF_CASTSDTGRWEKLFF 1 4775 PGT-178 PGT 0.94 1480 PGT-178 138 4637 4 HomoSapiens PGT LLAGIGTVPI Naive T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*02:01 B2M MHCI -9108 chip0423_141651 7.51 12.31 Chip2 healthy_3 healthy _ 6746 6522 G6PC2-LTS-10 IGRP 0.75 59 G6PC2-LTS-10 134 6388 7 HomoSapiens G6PC2 LTSLTILQLY transitional T cells between effector and memory populations PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*01:01 B2M MHCI -9109 chip0423_283084 -0.63 7.15 Chip2 T1D_6 T1D TGTGCAATGAGCCTTTCTAACTTTGGACATGAGACCTTACCCTTT CAMSLSNFGHETLPF TRAV12-3*01 TRAJ48*01 16.0 433.0 CAMSLSNFGHETLPF_ 1 6772 PGT-178 PGT 0.75 1480 PGT-178 120 6652 3 HomoSapiens PGT LLAGIGTVPI Naive T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*02:01 B2M MHCI -9110 chip0423_498154 -3.77 8.81 Chip2 healthy_3 healthy TGTGCCAGCAGCTTGTTCCTTGGGGACCGGCCCTACGAGCAGTACTTC CASSLFLGDRPYEQYF TRBV5-8*01 TRBJ2-7*01 9.0 434.0 _CASSLFLGDRPYEQYF 1 6389 NP44-52 FLU 0.65 474 NP44-52 122 6267 2 InfluenzaA NP CTELKLSDY Naive T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*01:01 B2M MHCI -9111 chip0423_78914 -5.08 9.35 Chip2 healthy_3 healthy TGTGCCGTTGTCATGTATTCAGGAGGAGGTGCTGACGGCCTCACCTTT CAVVMYSGGGADGLTF TRAV12-2*01 TRAJ45*01 10.0 407.0 CAVVMYSGGGADGLTF_ 1 5616 PGT-178 PGT 0.53 1480 NEG 128 5488 2 HomoSapiens PGT LLAGIGTVPI Naive T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*02:01 B2M MHCI -9112 chip0423_473120 6.68 12.73 Chip2 healthy_3 healthy TGTGCTGTGAGAAGGCACCAGGCAGGAACTGCTCTGATCTTT CAVRRHQAGTALIF TRAV3*01 TRAJ15*01 20.0 863.0 TGTGCCAGCAGCTTTGGGGTTGGGGATACAGAAGAGACCCAGTACTTC CASSFGVGDTEETQYF TRBV5-4*01 TRBJ2-5*01 91.0 3813.0 CAVRRHQAGTALIF_CASSFGVGDTEETQYF 3 4399 NP44-52 FLU 0.88 474 NP44-52 134 4265 7 InfluenzaA NP CTELKLSDY transitional T cells between effector and memory populations PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*01:01 B2M MHCI -9113 chip0423_619454 -4.44 10.58 Chip2 healthy_3 healthy TGTGCCAGCAGTTTGTGGGAGACCCAGTACTTC CASSLWETQYF TRBV12-3*01,TRBV12-4*01 TRBJ2-5*01 5.0 293.0 _CASSLWETQYF 1 4886 IGRP-222-230 IGRP 0.73 10 NEG 117 4769 2 HomoSapiens IGRP YLLLRVLNI Naive T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*02:01 B2M MHCI -9114 chip0423_256189 5.85 13.67 Chip2 healthy_3 healthy _ 6746 6712 NP44-52 FLU 0.74 474 NP44-52 136 6576 7 InfluenzaA NP CTELKLSDY transitional T cells between effector and memory populations PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*01:01 B2M MHCI -9115 chip0423_756982 6.82 12.65 Chip2 healthy_3 healthy TGTGCCAGCAGTGAAATGGGTGGAGGGTACAATGAGCAGTTCTTC CASSEMGGGYNEQFF TRBV2*01 TRBJ2-1*01 24.0 972.0 _CASSEMGGGYNEQFF 1 4605 PGT-178 PGT 0.8 1480 PGT-178 102 4503 7 HomoSapiens PGT LLAGIGTVPI transitional T cells between effector and memory populations PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*02:01 B2M MHCI -9116 chip0423_713664 11.66 10.08 Chip2 T1D_4 T1D TGTGCTGTGAGTGATGGAGAAGGAGCCCAGAAGCTGGTATTT CAVSDGEGAQKLVF TRAV8-6*01 TRAJ54*01 1.0 30.0 CAVSDGEGAQKLVF_ 12 4008 BZLF1-190-197 EBV 0.86 2156 BZLF1-190-197 150 3858 9 EBV BZLF1 RAKFKQLL effector memory T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-B*08:01 B2M MHCI -9117 chip0423_255191 11.61 12.4 Chip2 T1D_5 T1D TGTGCCAGCAGCTTACTTTCTGGACAGGGAGCTAACTATGGCTACACCTTC CASSLLSGQGANYGYTF TRBV11-1*01 TRBJ1-2*01 22.0 511.0 _CASSLLSGQGANYGYTF 1 4155 BZLF1-190-197 EBV 0.71 2156 NEG 126 4029 11 EBV BZLF1 RAKFKQLL effector T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-B*08:01 B2M MHCI -9118 chip0423_25120 15.24 12.18 Chip2 T1D_4 T1D _ 6746 2244 BZLF1-190-197 EBV 0.87 2156 NEG 124 2120 12 EBV BZLF1 RAKFKQLL effector T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-B*08:01 B2M MHCI -9119 chip0423_800969 6.23 14.16 Chip2 T1D_4 T1D TGTGCCGGACAGAGCAACACAGGCAAACTAATCTTT CAGQSNTGKLIF TRAV12-2*01 TRAJ37*01 20.0 1823.0 TGTGCCAGTAGCGTCAGGAGCGCCTACGAGCAGTACTTC CASSVRSAYEQYF TRBV19*01 TRBJ2-7*01 10.0 616.0 CAGQSNTGKLIF_CASSVRSAYEQYF 1 4716 M1 FLU 0.49 1250 M1 136 4580 7 InfluenzaA M1 GILGFVFTL transitional T cells between effector and memory populations PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*02:01 B2M MHCI -9120 chip0423_237189 13.87 9.9 Chip2 healthy_4 healthy _ 6746 4281 BZLF1-190-197 EBV 1.0 2156 NEG 120 4161 12 EBV BZLF1 RAKFKQLL effector T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-B*08:01 B2M MHCI -9121 chip0423_802150 -2.01 12.54 Chip2 T1D_6 T1D TGTGCAATGAGCCGTTATGGTCAGAATTTTGTCTCT CAMSRYGQNFVS TRAV12-3*01 TRAJ26*01 20.0 1028.0 TGTGCCAGCAGTTCAGGAGTCGGGTACGAGCAGTACTTC CASSSGVGYEQYF TRBV27*01 TRBJ2-7*01 21.0 1081.0 CAMSRYGQNFVS_CASSSGVGYEQYF 1 4166 MART1-A28L MART1 0.58 84 NEG 127 4039 4 HomoSapiens MART1 ALGIGILTV Naive T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*02:01 B2M MHCI -9122 chip0423_210239 -4.16 7.82 Chip2 T1D_4 T1D TGTGCCGTAGGAGGAGGTGCTGACGGACTCACCTTT CAVGGGADGLTF TRAV12-2*01 TRAJ45*01 36.0 2541.0 TGTGCCAGCAGTTACCTAGCGGGGGGCAATGAGCAGTTCTTC CASSYLAGGNEQFF TRBV6-5*01 TRBJ2-1*01 24.0 1018.0 CAVGGGADGLTF_CASSYLAGGNEQFF 1 7277 MART1-ALA MART1 0.54 269 NEG 129 7148 2 HomoSapiens MART1 ALAGIGILTV Naive T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*02:01 B2M MHCI -9123 chip0423_701697 15.25 10.85 Chip2 healthy_4 healthy TGTGCCGCGCCCCCGCTGATTTATCACCAGGGAGGAAAGCTTATCCTC CAAPPLIYHQGGKLIL TRAV8-1*01 TRAJ23*01 3.0 80.0 CAAPPLIYHQGGKLIL_ 1 1958 BZLF1-190-197 EBV 0.76 2156 BZLF1-190-197 123 1835 12 EBV BZLF1 RAKFKQLL effector T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-B*08:01 B2M MHCI -9124 chip0423_834795 16.27 10.62 Chip2 healthy_4 healthy TGCATCCTTCCCCTAGCTGGTGGTACTAGCTATGGAAAGCTGACATTT CILPLAGGTSYGKLTF TRAV26-2*01 TRAJ52*01 106.0 3657.0 CILPLAGGTSYGKLTF_ 55 1907 EBNA3A-193-201 EBV 0.83 1022 NEG 143 1764 12 EBV EBNA3A FLRGRAYGL effector T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-B*08:01 B2M MHCI -9125 chip0423_539899 -3.3 13.88 Chip2 T1D_6 T1D TGTGCGGGGTCGGCATCTAACTTTGGAAATGAGAAATTAACCTTT CAGSASNFGNEKLTF TRAV12-3*01 TRAJ48*01 37.0 1656.0 TGTGCCAGCAGTTTAGTCGCTGTAGCAGTCACCGGGGAGCTGTTTTTT CASSLVAVAVTGELFF TRBV28*01 TRBJ2-2*01 45.0 1408.0 CAGSASNFGNEKLTF_CASSLVAVAVTGELFF 1 3372 PGT-178 PGT 0.4 1480 NEG 110 3262 1 HomoSapiens PGT LLAGIGTVPI Naive T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*02:01 B2M MHCI -9126 chip0423_374459 -3.82 9.44 Chip2 healthy_3 healthy TGTGCCGATTCCACGGGAGGAGGAAACAAACTCACCTTT CADSTGGGNKLTF TRAV12-2*01 TRAJ10*01 24.0 1987.0 TGTGCCAGCAGTTACGGGCAAGGCGAGCAGTACTTC CASSYGQGEQYF TRBV6-2*01,TRBV6-3*01 TRBJ2-7*01 7.0 269.0 CADSTGGGNKLTF_CASSYGQGEQYF 1 5869 PGT-178 PGT 0.5 1480 NEG 129 5740 2 HomoSapiens PGT LLAGIGTVPI Naive T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*02:01 B2M MHCI -9127 chip0423_257148 9.34 11.24 Chip2 T1D_4 T1D TGCGCCAGCAGCTTGGAGCTGGGGTTTCCCTACGAGCAGTACTTC CASSLELGFPYEQYF TRBV5-1*01 TRBJ2-7*01 73.0 2777.0 _CASSLELGFPYEQYF 1 5504 EBNA3A-158-166 EBV 0.72 444 NEG 132 5372 9 EBV EBNA3A QAKWRLQTL effector memory T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-B*08:01 B2M MHCI -9128 chip0423_77082 -0.57 10.11 Chip2 healthy_4 healthy TGCAGGGGGGTTGACTACAAGCTCAGCTTT CRGVDYKLSF TRAV26-1*01 TRAJ20*01 1.0 12.0 TGTGCCAGCAGTGAAGCGGAACGGGACGGACCCTCTGGGGCCAACGTCCTGACTTTC CASSEAERDGPSGANVLTF TRBV6-1*01 TRBJ2-6*01 67.0 1816.0 CRGVDYKLSF_CASSEAERDGPSGANVLTF 1 5922 PGT-178 PGT 0.91 1480 PGT-178 114 5808 3 HomoSapiens PGT LLAGIGTVPI Naive T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*02:01 B2M MHCI -9129 chip0423_695922 -0.98 8.84 Chip2 T1D_6 T1D TGCATCGTTCCTAATAACAATGACATGCGCTTT CIVPNNNDMRF TRAV26-1*01 TRAJ43*01 11.0 1710.0 CIVPNNNDMRF_ 1 6614 MART1-A28L MART1 0.53 84 MART1-A28L 123 6491 4 HomoSapiens MART1 ALGIGILTV Naive T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*02:01 B2M MHCI -9130 chip0423_372463 11.14 11.94 Chip2 T1D_6 T1D TGCAGCGCCGGCAGGGACGGGACTAATGAAAAACTGTTTTTT CSAGRDGTNEKLFF TRBV29-1*01 TRBJ1-4*01 55.0 2838.0 _CSAGRDGTNEKLFF 159 3479 EBV-BLMF1 EBV 1.0 2531 NEG 130 3349 9 EBV BLMF1 GLCTLVAML effector memory T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*02:01 B2M MHCI -9131 chip0423_644214 12.34 6.85 Chip2 healthy_4 healthy TGCATCCTTCCCCTAGCTGGTGGTACTAGCTATGGAAAGCTGACATTT CILPLAGGTSYGKLTF TRAV26-2*01 TRAJ52*01 33.0 2098.0 TGTGCCAGCAGCTTGGGACAGGCCTACGAGCAGTACTTC CASSLGQAYEQYF TRBV7-8*01 TRBJ2-7*01 1.0 18.0 CILPLAGGTSYGKLTF_CASSLGQAYEQYF 308 3834 EBNA3A-193-201 EBV 0.89 1022 EBNA3A-193-201 130 3704 10 EBV EBNA3A FLRGRAYGL effector memory T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-B*08:01 B2M MHCI -9132 chip0423_615635 11.07 6.97 Chip2 T1D_5 T1D TGTGCAGCAAGCGAAACCTCCTACGACAAGGTGATATTT CAASETSYDKVIF TRAV13-1*01 TRAJ50*01 19.0 1412.0 CAASETSYDKVIF_ 51 4831 BZLF1-190-197 EBV 0.62 2156 BZLF1-190-197 149 4682 10 EBV BZLF1 RAKFKQLL effector memory T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-B*08:01 B2M MHCI -9133 chip0423_484679 11.31 9.2 Chip2 T1D_5 T1D TGTGCAGCATCAGAAACCTCCTACGACAAGGTGATATTT CAASETSYDKVIF TRAV13-1*01 TRAJ50*01 6.0 423.0 TGTGCCAGCAGGCCACTACAGGGGGCGGGCGAAAAACTGTTTTTT CASRPLQGAGEKLFF TRBV7-9*01 TRBJ1-4*01 6.0 170.0 CAASETSYDKVIF_CASRPLQGAGEKLFF 1 3833 BZLF1-190-197 EBV 0.71 2156 BZLF1-190-197 145 3688 10 EBV BZLF1 RAKFKQLL effector memory T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-B*08:01 B2M MHCI -9134 chip0423_244853 6.2 14.12 Chip2 healthy_3 healthy TGTGCCAGCAGTGAAATGTGGGGAGCACCCCTCCACTT CASSEMt?gGSTPPL TRAV14/DV4*01 TRAJ11*01 2.0 10.0 TGTGCCAGCAGTGAAATGTGGGGAGCACCCCTCCACTTT CASSEMWGAPLHF TRBV2*01 TRBJ1-6*01 48.0 2830.0 CASSEMt?gGSTPPL_CASSEMWGAPLHF 1 5615 NP44-52 FLU 0.86 474 NP44-52 131 5484 7 InfluenzaA NP CTELKLSDY transitional T cells between effector and memory populations PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*01:01 B2M MHCI -9135 chip0423_620609 5.16 10.24 Chip2 T1D_6 T1D _ 6746 9733 EBNA3A-158-166 EBV 0.63 444 NEG 129 9604 6 EBV EBNA3A QAKWRLQTL central memory T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-B*08:01 B2M MHCI -9136 chip0423_541374 14.08 10.51 Chip2 T1D_4 T1D TGTGCAATGAGCTATAGTGGAGGTAGCAACTATAAACTGACATTT CAMSYSGGSNYKLTF TRAV12-3*01 TRAJ53*01 31.0 1154.0 TGCAGCGTTGGGGCAGGGGACTACGAGCAGTACTTC CSVGAGDYEQYF TRBV29-1*01 TRBJ2-7*01 42.0 3237.0 CAMSYSGGSNYKLTF_CSVGAGDYEQYF 1 3727 BZLF1-190-197 EBV 0.6 2156 NEG 153 3574 12 EBV BZLF1 RAKFKQLL effector T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-B*08:01 B2M MHCI -9137 chip0423_531106 -1.82 10.1 Chip2 T1D_4 T1D TGTGCAATGAGCATATCTAACTTTGGAAATGAGAAATTAACCTTT CAMSISNFGNEKLTF TRAV12-3*01 TRAJ48*01 59.0 1972.0 TGTGCCAGCAGCGTCGGGGTAGCGGGGGGGCCCGGCCTCACAGATACGCAGTATTTT CASSVGVAGGPGLTDTQYF TRBV11-3*01 TRBJ2-3*01 53.0 1932.0 CAMSISNFGNEKLTF_CASSVGVAGGPGLTDTQYF 1 4551 PGT-178 PGT 0.64 1480 NEG 135 4416 3 HomoSapiens PGT LLAGIGTVPI Naive T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*02:01 B2M MHCI -9138 chip0423_519610 12.78 12.93 Chip2 T1D_4 T1D TGTGCCAGCAGCTTAGCGGCCGGAGAAGGGCCCCAGCATTTT CASSLAAGEGPQHF TRBV7-9*01 TRBJ1-5*01 12.0 591.0 _CASSLAAGEGPQHF 1 2487 BZLF1-190-197 EBV 0.81 2156 BZLF1-190-197 139 2348 11 EBV BZLF1 RAKFKQLL effector T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-B*08:01 B2M MHCI -9139 chip0423_482418 -2.5 10.06 Chip2 healthy_4 healthy _ 6746 4889 PTPRN-797-805 PTPRN 0.67 12 NEG 133 4756 4 HomoSapiens PTPRN MVWESGCTV Naive T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*02:01 B2M MHCI -9140 chip0423_811250 15.83 10.85 Chip2 healthy_4 healthy TGTGCCGTGAAGGACACCGACAAGCTCATCTTT CAVKDTDKLIF TRAV8-1*01 TRAJ34*01 1.0 187.0 TGTGCTGTAAACTTCAACAAATTTTACTTT CAVNFNKFYF TRAV8-3*01 TRAJ21*01 1.0 15.0 0.5 TGTGCCAGCAGCGCAACAGGGGACTACTATGGCTACACCTTC CASSATGDYYGYTF TRBV3-1*01 TRBJ1-2*01 41.0 1836.0 CAVKDTDKLIF_CASSATGDYYGYTF 2 2760 EBV-BRLF1 EBV 0.88 1264 NEG 138 2622 12 EBV BRLF1 YVLDHLIVV effector T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*02:01 B2M MHCI -9141 chip0423_543604 -2.34 9.48 Chip2 T1D_6 T1D TGTGCAATGAGCCACTCTAACTTTGGAAATGAGAAATTAACCTTT CAMSHSNFGNEKLTF TRAV12-3*01 TRAJ48*01 56.0 2075.0 CAMSHSNFGNEKLTF_ 1 6501 PGT-178 PGT 0.86 1480 NEG 131 6370 3 HomoSapiens PGT LLAGIGTVPI Naive T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*02:01 B2M MHCI -9142 chip0423_436702 13.88 10.81 Chip2 T1D_5 T1D TGTGCAGCAACGGAAACCTCCTACGACAAGGTGATATTT CAATETSYDKVIF TRAV13-1*01 TRAJ50*01 29.0 2258.0 TGTGCCAGCAGTCCCCCGGGGAGAAATGAAAAACTGTTTTTT CASSPPGRNEKLFF TRBV12-3*01,TRBV12-4*01 TRBJ1-4*01 34.0 1268.0 CAATETSYDKVIF_CASSPPGRNEKLFF 34 2111 BZLF1-190-197 EBV 0.73 2156 NEG 148 1963 12 EBV BZLF1 RAKFKQLL effector T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-B*08:01 B2M MHCI -9143 chip0423_280732 4.92 10.45 Chip2 T1D_4 T1D TGCATCCTGCCTCTTGCTGGTGGTACTAGCTATGGAAAGCTGACATTT CILPLAGGTSYGKLTF TRAV26-2*01 TRAJ52*01 31.0 807.0 TGTGCCAGCAGCTTAGGGCAAGCCTACGAGCAGTACTTC CASSLGQAYEQYF TRBV7-8*01 TRBJ2-7*01 17.0 890.0 CILPLAGGTSYGKLTF_CASSLGQAYEQYF 308 3973 EBNA3A-193-201 EBV 0.55 1022 NEG 114 3859 6 EBV EBNA3A FLRGRAYGL central memory T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-B*08:01 B2M MHCI -9144 chip0423_372874 -4.58 10.03 Chip2 healthy_3 healthy TGCATCCTCAGAGTCTTCTCTCAGGAACCTTCACCTCCCTCGTT CILRVFSc?aGTFTSLV TRAV26-1*01 TRAJ40*01 7.0 227.0 TGTGCCAGTAGTTCGACCGGGACAGGGGAAGAGACCCAGTACTTC CASSSTGTGEETQYF TRBV19*01 TRBJ2-5*01 39.0 1569.0 CILRVFSc?aGTFTSLV_CASSSTGTGEETQYF 1 4482 HCVNS4B-1807-1816 HCV 0.69 74 NEG 119 4363 2 HCV NS4B LLFNILGGWV Naive T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*02:01 B2M MHCI -9145 chip0423_358112 -1.93 7.33 Chip2 healthy_3 healthy TGTGCCGTTGATTCAGGAGGAGGTGCTGACGGACTCACCTTT CAVDSGGGADGLTF TRAV12-2*01 TRAJ45*01 29.0 2097.0 CAVDSGGGADGLTF_ 1 6429 PGT-178 PGT 0.61 1480 NEG 125 6304 3 HomoSapiens PGT LLAGIGTVPI Naive T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*02:01 B2M MHCI -9146 chip0423_340034 -2.92 9.13 Chip2 T1D_4 T1D TGTGCCGGGGATAGCAACTATCAGTTAATCTGG CAGDSNYQLIW TRAV12-1*01 TRAJ33*01 36.0 3725.0 TGTGCCAGCAGTCTGACACGAATAGGGGGTAACACCTTC CASSLTRIGGNTF TRBV28*01 TRBJ1-2*01 47.0 2512.0 CAGDSNYQLIW_CASSLTRIGGNTF 1 6103 MART1-ALA MART1 0.54 269 NEG 121 5982 2 HomoSapiens MART1 ALAGIGILTV Naive T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*02:01 B2M MHCI -9147 chip0423_243076 11.89 9.58 Chip2 T1D_4 T1D TGTGCTGTCAACTCAGGAAACACACCTCTTGTCTTT CAVNSGNTPLVF TRAV1-2*01 TRAJ29*01 9.0 1005.0 TGTGCCAGCAGCCAAGTCAACAACCCGGGGGATGGCTACACCTTC CASSQVNNPGDGYTF TRBV14*01 TRBJ1-2*01 19.0 518.0 CAVNSGNTPLVF_CASSQVNNPGDGYTF 31 4359 EBNA3A-158-166 EBV 0.48 444 NEG 145 4214 10 EBV EBNA3A QAKWRLQTL effector memory T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-B*08:01 B2M MHCI -9148 chip0423_366211 7.37 12.44 Chip2 T1D_6 T1D TGTCCGGTGGCGACCATGACTCTAGAAACACAACCCAACTAATCTTT CPVATMTct?RNTTQLIF TRAV2*01 TRAJ37*01 20.0 1878.0 TGTGCCAGCAGCTTAGCGGGTCGTGAGGGTACGCAGTATTTT CASSLAGREGTQYF TRBV11-3*01 TRBJ2-3*01 13.0 687.0 CPVATMTct?RNTTQLIF_CASSLAGREGTQYF 1 5218 NP380-388 FLU 0.63 60 NP380-388 140 5078 7 InfluenzaA NP ELRSRYWAI transitional T cells between effector and memory populations PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-B*08:01 B2M MHCI -9149 chip0423_272046 14.74 10.67 Chip2 T1D_5 T1D TGTACAGCAACGGAAACCTCCTACGACAAGGTGATATTT CTATETSYDKVIF TRAV13-1*01 TRAJ50*01 25.0 2058.0 TGTGCCAGCAGTCCCCCGGGGAGAAATGAAAAACTGTTTTTT CASSPPGRNEKLFF TRBV12-3*01,TRBV12-4*01 TRBJ1-4*01 24.0 720.0 CTATETSYDKVIF_CASSPPGRNEKLFF 1 3172 BZLF1-190-197 EBV 0.62 2156 NEG 144 3028 12 EBV BZLF1 RAKFKQLL effector T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-B*08:01 B2M MHCI -9150 chip0423_804268 6.61 11.7 Chip2 healthy_3 healthy TGTGCTTTCATGAAGCTTACCTACAATAACAATGACATGCGCTTT CAFMKLTYNNNDMRF TRAV38-1*01 TRAJ43*01 14.0 365.0 TGCAGTGCTGACGGCTACAGGGGGCCATATGGCTACACCTTC CSADGYRGPYGYTF TRBV20-1*01 TRBJ1-2*01 17.0 1183.0 CAFMKLTYNNNDMRF_CSADGYRGPYGYTF 2 6754 NP44-52 FLU 0.52 474 NEG 137 6617 7 InfluenzaA NP CTELKLSDY transitional T cells between effector and memory populations PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*01:01 B2M MHCI -9151 chip0423_740506 9.81 9.64 Chip2 T1D_6 T1D TGTCTTCTGGGTTAAGGGCCTAGGAGAGATGCGCTTT CLLG*G??cLGEMRF TRAV40*01 TRAJ43*01 8.0 714.0 TGCAGCGCTTACTCTACAGGGGACTATGGCTACACCTTC CSAYSTGDYGYTF TRBV29-1*01 TRBJ1-2*01 7.0 185.0 CLLG*G??cLGEMRF_CSAYSTGDYGYTF 1 6638 NP140-148 FLU 0.45 102 NEG 140 6498 9 InfluenzaA NP HSNLNDATY effector memory T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*01:01 B2M MHCI -9152 chip0423_513720 -1.47 7.76 Chip2 T1D_5 T1D TGTGCAGCGTCAAAAGCCATATCAGGAAACACACCTCTTGTCTTT CAASKAISGNTPLVF TRAV29/DV5*01 TRAJ29*01 11.0 422.0 TGTGCCAGCAGCTTAGCGGGTCGTGAGGGTACGCAGTATTTT CASSLAGREGTQYF TRBV11-3*01 TRBJ2-3*01 5.0 140.0 CAASKAISGNTPLVF_CASSLAGREGTQYF 1 8238 ZNT8-VTD-9 ZNT8 0.55 65 ZNT8-VTD-9 120 8118 3 HomoSapiens ZNT8 VTDAAHLLI Naive T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*01:01 B2M MHCI -9153 chip0423_413139 13.56 13.2 Chip2 T1D_4 T1D TGCATCGTCAGAGAGGGGGGCGGTGCTGTCGGTCTCACCTTT CIVREGGGAVGLTF TRAV26-1*01 TRAJ45*01 26.0 1988.0 TGTGCCAGCAGCTTAGCGGTCGGAGAAGGGCCCCAGCATTTT CASSLAVGEGPQHF TRBV7-9*01 TRBJ1-5*01 65.0 2595.0 CIVREGGGAVGLTF_CASSLAVGEGPQHF 1 2425 BZLF1-190-197 EBV 0.75 2156 NEG 128 2297 11 EBV BZLF1 RAKFKQLL effector T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-B*08:01 B2M MHCI -9154 chip0423_93381 -2.89 12.93 Chip2 T1D_6 T1D TGTGCTCTGAGGTTGAATGGTCAATCACAACGACATGCGCTTT CALRLNG??cNHNDMRF TRAV19*01 TRAJ43*01 52.0 2629.0 TGTGCCAGCCGTTGCCTGGGGCCTTCGAGCTCTGGAAACACCATATGTCTT CASRCLGPSSSGNTICL TRBV6-8*01 TRBJ1-3*01 7.0 405.0 CALRLNG??cNHNDMRF_CASRCLGPSSSGNTICL 1 5087 INS-MAL-8 INS 0.57 38 NEG 112 4975 1 HomoSapiens INS MALWMRLL Naive T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-B*08:01 B2M MHCI -9155 chip0423_624539 14.99 9.49 Chip2 healthy_4 healthy _ 6746 3964 EBV-BRLF1 EBV 1.0 1264 NEG 148 3816 12 EBV BRLF1 YVLDHLIVV effector T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*02:01 B2M MHCI -9156 chip0423_570610 12.05 10.14 Chip2 T1D_5 T1D TGTGCCAGCAGTTCACTAGACAGGGGGCCGAACACCGGGGAGCTGTTTTTT CASSSLDRGPNTGELFF TRBV12-3*01,TRBV12-4*01 TRBJ2-2*01 60.0 2645.0 _CASSSLDRGPNTGELFF 3 5764 BZLF1-190-197 EBV 0.41 2156 NEG 142 5622 9 EBV BZLF1 RAKFKQLL effector memory T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-B*08:01 B2M MHCI -9157 chip0423_195435 -4.31 8.46 Chip2 healthy_3 healthy TGTGTGGTGGGAATAGGCTTT CVVGIGF TRAV12-1*01 TRAJ34*01 6.0 17.0 CVVGIGF_ 1 5667 PGT-178 PGT 0.5 1480 PGT-178 129 5538 2 HomoSapiens PGT LLAGIGTVPI Naive T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*02:01 B2M MHCI -9158 chip0423_807699 15.52 12.2 Chip2 T1D_5 T1D TGCGCAGCTCAGGAAACCTCCTACGACAAGGTGATATTT CAAQETSYDKVIF TRAV13-1*01 TRAJ50*01 44.0 3521.0 TGTGCCAGCACCCAGGTAGACAGACCCAACTATGGCTACACCTTC CASTQVDRPNYGYTF TRBV7-9*01 TRBJ1-2*01 31.0 1133.0 CAAQETSYDKVIF_CASTQVDRPNYGYTF 17 2676 BZLF1-190-197 EBV 0.47 2156 NEG 117 2559 12 EBV BZLF1 RAKFKQLL effector T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-B*08:01 B2M MHCI -9159 chip0423_779444 14.96 12.11 Chip2 T1D_6 T1D TGCGCCAGCAGTCTCCATCCATGGGGCTGCCTACAATGAGCAGGTCTTC CASSLHPW??gAAYNEQVF TRBV4-3*01 TRBJ2-1*01 8.0 758.0 _CASSLHPW??gAAYNEQVF 2 1895 EBNA3A-193-201 EBV 0.71 1022 NEG 162 1733 12 EBV EBNA3A FLRGRAYGL effector T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-B*08:01 B2M MHCI -9160 chip0423_409413 -3.46 13.04 Chip2 T1D_4 T1D TGTGCCAGCAGTTTTGCAGGCGGAAACACCATATATTTT CASSFAGGNTIYF TRBV28*01 TRBJ1-3*01 9.0 462.0 _CASSFAGGNTIYF 1 3655 PGT-178 PGT 0.65 1480 NEG 127 3528 1 HomoSapiens PGT LLAGIGTVPI Naive T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*02:01 B2M MHCI -9161 chip0423_30294 7.36 9.31 Chip2 healthy_3 healthy TGTGCCAGCAGTTTAAGTACAGGGCAAGAGACCCAGTACTTC CASSLSTGQETQYF TRBV28*01 TRBJ2-5*01 12.0 466.0 _CASSLSTGQETQYF 1 9455 NP44-52 FLU 0.76 474 NP44-52 134 9321 8 InfluenzaA NP CTELKLSDY effector memory T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*01:01 B2M MHCI -9162 chip0423_787432 16.08 10.07 Chip2 healthy_4 healthy TGTGCCAGCAGCGCAACAGGGGACTACTATGGCTACACCTTC CASSATGDYYGYTF TRBV3-1*01 TRBJ1-2*01 8.0 547.0 _CASSATGDYYGYTF 3 2886 EBV-BRLF1 EBV 0.88 1264 EBV-BRLF1 136 2750 12 EBV BRLF1 YVLDHLIVV effector T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*02:01 B2M MHCI -9163 chip0423_774044 4.91 11.59 Chip2 healthy_4 healthy TCTGTTGTGTCTTAATCTGGGGTTTACCAAACAGTTACCTTT SVVS*SGVYQTVTF TRAV8-1*01 TRAJ13*01 22.0 1122.0 TGCAGTGCCTGGACTAGCGACTCCTACAATGAGCAGTTCTTC CSAWTSDSYNEQFF TRBV20-1*01 TRBJ2-1*01 42.0 2929.0 SVVS*SGVYQTVTF_CSAWTSDSYNEQFF 1 5637 M1 FLU 1.0 1250 NEG 135 5502 6 InfluenzaA M1 GILGFVFTL central memory T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*02:01 B2M MHCI -9164 chip0423_540950 5.41 10.52 Chip2 healthy_3 healthy TGTGCCAGCAGCTTAGGCTTGATTACTGAAGCTTTCTTT CASSLGLITEAFF TRBV7-2*01 TRBJ1-1*01 2.0 117.0 _CASSLGLITEAFF 1 4940 PB1-590-599 FLU 0.7 37 NEG 121 4819 6 InfluenzaA PB1 LVSDGGPNLY central memory T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*01:01 B2M MHCI -9165 chip0423_350571 4.81 11.75 Chip2 healthy_4 healthy _ 6746 3024 M1 FLU 1.0 1250 NEG 119 2905 6 InfluenzaA M1 GILGFVFTL central memory T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*02:01 B2M MHCI -9166 chip0423_491624 10.96 9.04 Chip2 T1D_5 T1D _ 6746 5336 BZLF1-190-197 EBV 0.62 2156 NEG 128 5208 10 EBV BZLF1 RAKFKQLL effector memory T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-B*08:01 B2M MHCI -9167 chip0423_78353 15.32 12.16 Chip2 healthy_3 healthy TGTGTGGTCCCAATGAACACAGGCTTTCAGAAACTTGTATTT CVVPMNTGFQKLVF TRAV12-1*01 TRAJ8*01 56.0 3262.0 TGTGCCAGCCGTGTCGGGGCCAGCGATCAGCCCCAGCATTTT CASRVGASDQPQHF TRBV2*01 TRBJ1-5*01 3.0 132.0 CVVPMNTGFQKLVF_CASRVGASDQPQHF 1 2761 PB1-590-599 FLU 0.54 37 PB1-590-599 121 2640 12 InfluenzaA PB1 LVSDGGPNLY effector T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*01:01 B2M MHCI -9168 chip0423_827379 9.7 8.6 Chip2 T1D_4 T1D TGTGCCAGCAGCTTAGCGGTCGGAGAAGGGCCCCAGCATTTT CASSLAVGEGPQHF TRBV7-9*01 TRBJ1-5*01 39.0 1622.0 _CASSLAVGEGPQHF 113 3529 BZLF1-190-197 EBV 0.68 2156 BZLF1-190-197 158 3371 8 EBV BZLF1 RAKFKQLL effector memory T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-B*08:01 B2M MHCI -9169 chip0423_15594 10.65 7.07 Chip2 T1D_4 T1D TGTGCTGTGCGTGCTGGTGACGGCGCCCCGCCGCTGGTCTTT CAVRAGDGAPPLVF TRAV8-6*01 TRAJ54*01 7.0 214.0 TGTGCCAGCAGCTTAACGGTTCTGGCAGGTCCAAACACTGAAGCTTTCTTT CASSLTVLAGPNTEAFF TRBV7-3*01 TRBJ1-1*01 55.0 2169.0 CAVRAGDGAPPLVF_CASSLTVLAGPNTEAFF 1 5353 BZLF1-190-197 EBV 0.8 2156 BZLF1-190-197 163 5190 10 EBV BZLF1 RAKFKQLL effector memory T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-B*08:01 B2M MHCI -9170 chip0423_391653 11.74 7.84 Chip2 T1D_5 T1D TGTGCAGCAAGTGAAACCTCCTACGACAAGGTGATATTT CAASETSYDKVIF TRAV13-1*01 TRAJ50*01 1.0 83.0 CAASETSYDKVIF_ 51 3736 BZLF1-190-197 EBV 0.75 2156 BZLF1-190-197 139 3597 10 EBV BZLF1 RAKFKQLL effector memory T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-B*08:01 B2M MHCI -9171 chip0423_665424 8.78 8.0 Chip2 T1D_5 T1D TGCGCCAGCAGCCAAGAAGGCGTAAGATACGAGCAGTACTTC CASSQEGVRYEQYF TRBV4-1*01 TRBJ2-7*01 1.0 43.0 _CASSQEGVRYEQYF 1 6896 BZLF1-190-197 EBV 0.46 2156 NEG 150 6746 8 EBV BZLF1 RAKFKQLL effector memory T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-B*08:01 B2M MHCI -9172 chip0423_633258 -2.26 8.05 Chip2 healthy_4 healthy _ 6746 6601 PGT-178 PGT 0.58 1480 NEG 106 6495 2 HomoSapiens PGT LLAGIGTVPI Naive T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*02:01 B2M MHCI -9173 chip0423_642934 12.44 6.93 Chip2 T1D_6 T1D TGCATCCTCCCACTTGCTGGTGGTACTAGCTATGGAAAGCTGACATTT CILPLAGGTSYGKLTF TRAV26-2*01 TRAJ52*01 49.0 2160.0 TGTGCCAGCAGCTTGGGACAGGCCTACGAGCAGTACTTC CASSLGQAYEQYF TRBV7-8*01 TRBJ2-7*01 11.0 569.0 CILPLAGGTSYGKLTF_CASSLGQAYEQYF 308 5293 EBNA3A-193-201 EBV 0.65 1022 NEG 149 5144 10 EBV EBNA3A FLRGRAYGL effector memory T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-B*08:01 B2M MHCI -9174 chip0423_273041 -3.97 11.37 Chip2 T1D_4 T1D TGTGCTTTCATGACGAATTATGGAGGAAGCCAAGGAAATCCCATCTTT CAFMTNYGGSQGNPIF TRAV38-1*01 TRAJ42*01 45.0 1496.0 TGTGCTCGGAGGAGGAGTGGAGGTAGCAACTATAAACTGACATTT CARRRSGGSNYKLTF TRAV21*01 TRAJ53*01 44.0 1751.0 0.32 TGTGCCAGCAGCTCCCAGGGGAATGGCTACACCTTC CASSSQGNGYTF TRBV13*01 TRBJ1-2*01 12.0 768.0 CAFMTNYGGSQGNPIF_CASSSQGNGYTF 1 4207 ZNT8-YAY-8 ZNT8 0.65 54 ZNT8-YAY-8 127 4080 1 HomoSapiens ZNT8 YAYAKWKL Naive T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-B*08:01 B2M MHCI -9175 chip0423_153625 13.27 10.48 Chip2 T1D_5 T1D TGTGCCAGCAGCTTAACAGAAAGCTCTGGAAACACCATATATTTT CASSLTESSGNTIYF TRBV7-9*01 TRBJ1-3*01 13.0 292.0 _CASSLTESSGNTIYF 1 6169 BZLF1-190-197 EBV 0.55 2156 NEG 130 6039 9 EBV BZLF1 RAKFKQLL effector memory T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-B*08:01 B2M MHCI -9176 chip0423_745488 6.57 11.48 Chip2 healthy_3 healthy TGCATCGTCATAGCCTCCCAAGAAATGCAGGCGACATGCTCTCCTTT CIVIASQga?NAGDMLSF TRAV26-1*01 TRAJ39*01 3.0 80.0 CIVIASQga?NAGDMLSF_ 1 7243 M1 FLU 0.59 1250 NEG 115 7128 7 InfluenzaA M1 GILGFVFTL transitional T cells between effector and memory populations PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*02:01 B2M MHCI -9177 chip0423_137629 16.21 10.52 Chip2 T1D_4 T1D TGTGCCAGCAGCTTAGCGGTCGGAGCAGGGCCCCAGCATTTT CASSLAVGAGPQHF TRBV7-9*01 TRBJ1-5*01 12.0 473.0 _CASSLAVGAGPQHF 1 2965 BZLF1-190-197 EBV 0.65 2156 BZLF1-190-197 131 2834 12 EBV BZLF1 RAKFKQLL effector T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-B*08:01 B2M MHCI -9178 chip0423_279467 13.62 10.2 Chip2 healthy_4 healthy TGTGCCAGCAGCTTAGATAGTCCTTCCTACTACGAGCAGTACTTC CASSLDSPSYYEQYF TRBV11-2*01 TRBJ2-7*01 20.0 1178.0 _CASSLDSPSYYEQYF 2 3376 ZNT8-273-282 ZNT8 0.56 8 NEG 112 3264 12 HomoSapiens ZNT8 LLMEGVPKSL effector T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*02:01 B2M MHCI -9179 chip0423_856286 -2.79 10.21 Chip2 T1D_4 T1D TGTGCTGCCCCAGGACGTGGCTCTAACAGCTCAGGCGCGCTGATCTTT CAAPGRGSNSSGALIF TRAV2*01 TRAJ37*01 26.0 1111.0 CAAPGRGSNSSGALIF_ 1 7283 MART1-ALA MART1 0.62 269 NEG 135 7148 3 HomoSapiens MART1 ALAGIGILTV Naive T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*02:01 B2M MHCI -9180 chip0423_457863 7.23 11.45 Chip2 healthy_3 healthy TGCGCTGTGATAAGGAGAGCACTTACTTTT CAVIRRALTF TRAV1-1*01 TRAJ5*01 13.0 932.0 TGTGCCAGCGGGGGACAGGGTGATTCCTACGAGCAGTACTTC CASGGQGDSYEQYF TRBV2*01 TRBJ2-7*01 56.0 2387.0 CAVIRRALTF_CASGGQGDSYEQYF 1 7102 NP44-52 FLU 0.88 474 NP44-52 112 6990 7 InfluenzaA NP CTELKLSDY transitional T cells between effector and memory populations PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*01:01 B2M MHCI -9181 chip0423_241567 6.84 10.84 Chip2 healthy_4 healthy TGTGCAGGGGGCGGAAGCCAAGGAAATCTCATCTTT CAGGGSQGNLIF TRAV27*01 TRAJ42*01 19.0 1886.0 TGTGCCAGTAGCACCCGTAGTGCCTACGAGCAGTACTTC CASSTRSAYEQYF TRBV19*01 TRBJ2-7*01 16.0 582.0 CAGGGSQGNLIF_CASSTRSAYEQYF 1 6209 M1 FLU 0.88 1250 M1 130 6079 7 InfluenzaA M1 GILGFVFTL transitional T cells between effector and memory populations PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*02:01 B2M MHCI -9182 chip0423_735803 -2.57 10.23 Chip2 T1D_5 T1D TGTGCCAGCAGCCCTATTACAGGTCGGGTCCTTCGGCAGCCCCAGCATTTT CASSPITGRVLRQPQHF TRBV7-4*01 TRBJ1-5*01 43.0 1426.0 _CASSPITGRVLRQPQHF 1 5953 INS-WMR-10 INS 0.46 5 INS-WMR-10 137 5816 3 HomoSapiens INS WMRLLPLLAL Naive T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-B*08:01 B2M MHCI -9183 chip0423_236249 15.33 10.41 Chip2 T1D_5 T1D TGTGCCAGCCAACTAGCGGGGGGCCCCGGGGAGCTGTTTTTT CASQLAGGPGELFF TRBV24-1*01 TRBJ2-2*01 8.0 494.0 _CASQLAGGPGELFF 1 3083 BZLF1-190-197 EBV 0.57 2156 NEG 167 2916 12 EBV BZLF1 RAKFKQLL effector T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-B*08:01 B2M MHCI -9184 chip0423_111807 6.25 14.27 Chip2 healthy_3 healthy TGTGCCAGCAGCTTGTGGTACAGAGTGGAGACCCAGTACTTC CASSLWYRVETQYF TRBV5-6*01 TRBJ2-5*01 58.0 3307.0 _CASSLWYRVETQYF 4 6368 NP44-52 FLU 0.71 474 NP44-52 134 6234 7 InfluenzaA NP CTELKLSDY transitional T cells between effector and memory populations PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*01:01 B2M MHCI -9185 chip0423_579793 14.07 10.37 Chip2 T1D_5 T1D _ 6746 3779 BZLF1-190-197 EBV 0.75 2156 BZLF1-190-197 132 3647 12 EBV BZLF1 RAKFKQLL effector T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-B*08:01 B2M MHCI -9186 chip0423_523019 6.35 11.8 Chip2 healthy_3 healthy TGTGTGGTGAACGGGGAAAATGCCAGACTCATGTTT CVVNGENARLMF TRAV12-1*01 TRAJ31*01 19.0 2028.0 TGTGCCAACAGGAAATGTGGGGAGCACCCCTCCACTTT CANRKCg?gGAPLHF TRBV2*01 TRBJ1-6*01 3.0 472.0 CVVNGENARLMF_CANRKCg?gGAPLHF 1 8211 NP44-52 FLU 0.97 474 NP44-52 119 8092 7 InfluenzaA NP CTELKLSDY transitional T cells between effector and memory populations PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*01:01 B2M MHCI -9187 chip0423_432768 10.12 9.46 Chip2 T1D_4 T1D TGTGCAGGGACCAATCTTT CAG??aPIF TRAV13-2*01 TRAJ37*01 8.0 1356.0 CAG??aPIF_ 1 4325 EBNA3A-158-166 EBV 0.4 444 NEG 145 4180 9 EBV EBNA3A QAKWRLQTL effector memory T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-B*08:01 B2M MHCI -9188 chip0423_361206 -2.59 9.27 Chip2 T1D_6 T1D TGCGCCAGCAGCTGGGACACAGCCTACGAGCAGTACTTC CASSWDTAYEQYF TRBV5-1*01 TRBJ2-7*01 17.0 1220.0 _CASSWDTAYEQYF 1 8023 IAPP-ILK-8 IAPP 0.45 20 NEG 147 7876 3 HomoSapiens IAPP ILKLQVFL Naive T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-B*08:01 B2M MHCI -9189 chip0423_848962 -4.2 8.68 Chip2 healthy_3 healthy TGTGCCGTCACCTCATCAGGAGGCAGCTCCTTACCTCCCTTT CAVTSSGGSSLPPF TRAV12-2*01 TRAJ6*01 7.0 200.0 TGTGCCAGCACTGGGTTGAGCTCCTACAATGAGCAGTTCTTC CASTGLSSYNEQFF TRBV3-1*01 TRBJ2-1*01 30.0 1961.0 CAVTSSGGSSLPPF_CASTGLSSYNEQFF 1 6458 GAD65-114-122 GAD65 0.68 63 NEG 127 6331 2 HomoSapiens GAD65 VMNILLQYV Naive T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*02:01 B2M MHCI -9190 chip0423_805971 5.98 13.72 Chip2 healthy_3 healthy TGCATCGTCAGAGTCGTAGGGACCAGTTCTATTTT CIVRVgt?RDQFYF TRAV26-1*01 TRAJ49*01 1.0 72.0 TGTGCCAGCAGCCCAGGGTTTCGGACGCCCGAGGGTGGCTACACCTTC CASSPGFRTPEGGYTF TRBV3-1*01 TRBJ1-2*01 2.0 47.0 CIVRVgt?RDQFYF_CASSPGFRTPEGGYTF 1 4874 NP44-52 FLU 0.72 474 NP44-52 135 4739 7 InfluenzaA NP CTELKLSDY transitional T cells between effector and memory populations PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*01:01 B2M MHCI -9191 chip0423_389250 13.22 7.35 Chip2 T1D_5 T1D TGTGCGGCCCGAGGAAGCTCCTACGGCAAGGTGATAGTT CAARGSSYGKVIV TRAV13-1*01 TRAJ50*01 3.0 156.0 TGTGCCACCAGTCCCCCGGGCAGGGCTAATGAGCAGTTCTTC CATSPPGRANEQFF TRBV24-1*01 TRBJ2-1*01 51.0 2997.0 CAARGSSYGKVIV_CATSPPGRANEQFF 1 4292 BZLF1-190-197 EBV 0.47 2156 NEG 150 4142 10 EBV BZLF1 RAKFKQLL effector memory T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-B*08:01 B2M MHCI -9192 chip0423_795992 -1.69 10.4 Chip2 T1D_5 T1D TGCAGCGTTGAAGCCTGGGGGGAAGCTTTCTTT CSVEAWGEAFF TRBV29-1*01 TRBJ1-1*01 24.0 1762.0 _CSVEAWGEAFF 1 5514 GFAP-EGH-9 GFAP 0.46 4 NEG 149 5365 3 HomoSapiens GFAP EGHLKRNIV Naive T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-B*08:01 B2M MHCI -9193 chip0423_258411 8.76 9.88 Chip2 T1D_5 T1D TGTGCAGCGGCGGAAACCTCCTACGACAAGGTGATATTT CAAAETSYDKVIF TRAV13-1*01 TRAJ50*01 28.0 2033.0 TGTGCCAGCCAACTAGCGGGAGGCACCGGGGAGCTGTTTTTT CASQLAGGTGELFF TRBV24-1*01 TRBJ2-2*01 24.0 917.0 CAAAETSYDKVIF_CASQLAGGTGELFF 131 3288 BZLF1-190-197 EBV 0.5 2156 NEG 149 3139 8 EBV BZLF1 RAKFKQLL effector memory T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-B*08:01 B2M MHCI -9194 chip0423_219537 7.09 12.98 Chip2 T1D_6 T1D _ 6746 5298 NP380-388 FLU 0.58 60 NEG 121 5177 7 InfluenzaA NP ELRSRYWAI transitional T cells between effector and memory populations PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-B*08:01 B2M MHCI -9195 chip0423_626511 -3.13 9.62 Chip2 T1D_6 T1D TGCCTCGTGGGTGACATGTTGAACTTCAGGCCCACTAACCCTGACATGCGCTTT CLVGDMLNFRPTNPDMRF TRAV4*01 TRAJ43*01 38.0 650.0 TGTGCAGAGGTCTCTGGCAACACAGGCAAACTAACCTTT CAEVSGNTGKLTF TRAV5*01 TRAJ37*01 26.0 2008.0 0.29 TGTGCCAGCAGCCAGGAGGGGTTAACTGAAGCTTTCTTT CASSQEGLTEAFF TRBV3-1*01 TRBJ1-1*01 35.0 1641.0 CLVGDMLNFRPTNPDMRF_CASSQEGLTEAFF 1 6241 IGRP-152-160-WLI IGRP 0.41 27 NEG 131 6110 2 HomoSapiens IGRP FLWSVFWLI Naive T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*02:01 B2M MHCI -9196 chip0423_54309 7.07 13.19 Chip2 healthy_4 healthy _ 6746 3614 M1 FLU 0.91 1250 M1 113 3501 7 InfluenzaA M1 GILGFVFTL transitional T cells between effector and memory populations PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*02:01 B2M MHCI -9197 chip0423_628969 6.61 11.52 Chip2 T1D_5 T1D _ 6746 4895 BZLF1-190-197 EBV 0.44 2156 NEG 126 4769 7 EBV BZLF1 RAKFKQLL transitional T cells between effector and memory populations PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-B*08:01 B2M MHCI -9198 chip0423_496524 12.46 13.07 Chip2 T1D_5 T1D TGTGCCAGCAGTGGACGTGTAGAGGAATACGGCGGGGAGCTGTTTTTT CASSGRVEEYGGELFF TRBV27*01 TRBJ2-2*01 30.0 1935.0 _CASSGRVEEYGGELFF 6 2024 BZLF1-190-197 EBV 0.62 2156 NEG 128 1896 11 EBV BZLF1 RAKFKQLL effector T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-B*08:01 B2M MHCI -9199 chip0423_561039 11.65 10.83 Chip2 T1D_4 T1D TGTGGAGCAGACGCAACCTCAGGAACCTACAAATACATCTTT CGADATSGTYKYIF TRAV34*01 TRAJ40*01 1.0 41.0 TGCAGCGTGGGGTCGGGGGAGGGCTACGAGCAGTACTTC CSVGSGEGYEQYF TRBV29-1*01 TRBJ2-7*01 10.0 804.0 CGADATSGTYKYIF_CSVGSGEGYEQYF 6 4416 BZLF1-190-197 EBV 0.85 2156 NEG 139 4277 9 EBV BZLF1 RAKFKQLL effector memory T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-B*08:01 B2M MHCI -9200 chip0423_571334 10.45 10.42 Chip2 T1D_5 T1D TGTGCAGCAACGGAAACCTCCTACGACAAGGTGATATTT CAATETSYDKVIF TRAV13-1*01 TRAJ50*01 22.0 2911.0 TGTGCCAGCAGTCCCCCGGGGAGAAATGAAAAACTGTTTTTT CASSPPGRNEKLFF TRBV12-3*01,TRBV12-4*01 TRBJ1-4*01 39.0 2281.0 CAATETSYDKVIF_CASSPPGRNEKLFF 34 4738 BZLF1-190-197 EBV 0.7 2156 BZLF1-190-197 133 4605 9 EBV BZLF1 RAKFKQLL effector memory T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-B*08:01 B2M MHCI -9201 chip0423_220126 -1.76 11.87 Chip2 T1D_4 T1D TGTGCCACACATCCGAAAGACCGCTATGGCTACACCTTC CATHPKDRYGYTF TRBV19*01 TRBJ1-2*01 17.0 1136.0 _CATHPKDRYGYTF 1 3763 NP44-52 FLU 0.64 474 NP44-52 122 3641 3 InfluenzaA NP CTELKLSDY Naive T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*01:01 B2M MHCI -9202 chip0423_70289 -4.5 8.4 Chip2 T1D_4 T1D TGTGCTGGAGCTCGTAACAATGACATGCGCTTT CAGARNNDMRF TRAV27*01 TRAJ43*01 54.0 3664.0 TGTGCCAGCAGCTCCGTGGGGGGGGGCTACGAGCAGTACTTC CASSSVGGGYEQYF TRBV7-6*01 TRBJ2-7*01 41.0 2690.0 CAGARNNDMRF_CASSSVGGGYEQYF 1 6085 INS-WMR-8 INS 0.72 17 NEG 103 5982 2 HomoSapiens INS WMRLLPLL Naive T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-B*08:01 B2M MHCI -9203 chip0423_867944 -3.18 7.74 Chip2 healthy_3 healthy _ 6746 5358 M1 FLU 0.41 1250 NEG 129 5229 2 InfluenzaA M1 GILGFVFTL Naive T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*02:01 B2M MHCI -9204 chip0423_640613 -1.02 7.6 Chip2 T1D_6 T1D TGTGTTGTGATCTTAGACACAGGCTTTCAGAAACTTGTATTT CVVILDTGFQKLVF TRAV8-2*01 TRAJ8*01 9.0 210.0 TGTGCCAGCAGCCCAGGGTCCTACGAGCAGTACTTC CASSPGSYEQYF TRBV11-3*01 TRBJ2-7*01 19.0 1312.0 CVVILDTGFQKLVF_CASSPGSYEQYF 1 9372 PGT-178 PGT 0.84 1480 PGT-178 127 9245 4 HomoSapiens PGT LLAGIGTVPI Naive T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*02:01 B2M MHCI -9205 chip0423_529252 6.93 12.14 Chip2 healthy_3 healthy TGTGCCAGCACGGGGACTAGCGATAGCACAGATACGCAGTATTTT CASTGTSDSTDTQYF TRBV2*01 TRBJ2-3*01 56.0 3164.0 _CASTGTSDSTDTQYF 9 5828 NP44-52 FLU 0.85 474 NP44-52 131 5697 7 InfluenzaA NP CTELKLSDY transitional T cells between effector and memory populations PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*01:01 B2M MHCI -9206 chip0423_247175 11.65 7.1 Chip2 T1D_4 T1D TGTGCCAGCAGCCAGGAGGACTCCCGTTGGGAGCAGTTCTTC CASSQEDSRWEQFF TRBV14*01 TRBJ2-1*01 8.0 246.0 _CASSQEDSRWEQFF 3 4811 EBV-LMP1-1 EBV 0.8 237 NEG 159 4652 10 EBV LMP1 YLLEMLWRL effector memory T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*02:01 B2M MHCI -9207 chip0423_787444 -0.72 9.59 Chip2 T1D_6 T1D TGTGCAATGGGCGGCTTCTTATACCCCAGCAGGAGAACAATTACGTGT CAMGGFLYPSRRTITC TRAV14/DV4*01 TRAJ5*01 4.0 130.0 TGCCTCGAGGGTTCTGCAAGGCAACTGACCTTT CLEGSARQLTF TRAV4*01 TRAJ22*01 2.0 75.0 0.2 TGTGCCAGTAGTATAGACCAAGGGTTCCGTCAGCCCCAGCATTTT CASSIDQGFRQPQHF TRBV19*01 TRBJ1-5*01 14.0 380.0 CAMGGFLYPSRRTITC_CASSIDQGFRQPQHF 1 8861 PB1-590-599 FLU 0.44 37 NEG 142 8719 3 InfluenzaA PB1 LVSDGGPNLY Naive T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*01:01 B2M MHCI -9208 chip0423_569323 6.19 10.24 Chip2 healthy_3 healthy TGTGCCAGCAGCTTACTGCTGAACACTGAAGCTTTCTTT CASSLLLNTEAFF TRBV7-3*01 TRBJ1-1*01 4.0 180.0 _CASSLLLNTEAFF 1 6120 EBV-LMP2A EBV 0.8 700 NEG 124 5996 6 EBV LMP2A CLGGLLTMV central memory T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*02:01 B2M MHCI -9209 chip0423_313203 15.74 9.44 Chip2 T1D_5 T1D TGTGCAGAGATGGAAACCTCCTACGACAGGGTGATATTT CAEMETSYDRVIF TRAV13-2*01 TRAJ50*01 33.0 2402.0 TGTGCCAGCAGCTCCTTAAGCGGGGGGGCAGGAAATGAGCAGTTCTTC CASSSLSGGAGNEQFF TRBV7-9*01 TRBJ2-1*01 32.0 1752.0 CAEMETSYDRVIF_CASSSLSGGAGNEQFF 1 2114 BZLF1-190-197 EBV 0.55 2156 NEG 141 1973 12 EBV BZLF1 RAKFKQLL effector T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-B*08:01 B2M MHCI -9210 chip0423_796589 11.73 8.28 Chip2 healthy_3 healthy _ 6746 4667 GAD65-114-122 GAD65 0.8 63 GAD65-114-122 134 4533 10 HomoSapiens GAD65 VMNILLQYV effector memory T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*02:01 B2M MHCI -9211 chip0423_278681 -0.29 8.81 Chip2 T1D_6 T1D TGTGCCAGCAGCCTGGGACAGTCCTACGAGCAGTACTTC CASSLGQSYEQYF TRBV7-7*01 TRBJ2-7*01 2.0 149.0 _CASSLGQSYEQYF 1 7855 MART1-A28L MART1 0.64 84 MART1-A28L 103 7752 4 HomoSapiens MART1 ALGIGILTV Naive T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*02:01 B2M MHCI -9212 chip0423_91761 11.29 6.84 Chip2 healthy_4 healthy _ 6746 6112 BZLF1-190-197 EBV 0.65 2156 NEG 135 5977 10 EBV BZLF1 RAKFKQLL effector memory T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-B*08:01 B2M MHCI -9213 chip0423_456802 8.17 11.15 Chip2 T1D_5 T1D TGTGCGGGGGGAGAAACCTCCTACGACAAGGTGATATTT CAGGETSYDKVIF TRAV13-1*01 TRAJ50*01 9.0 357.0 TGTGCCAGCAGCTCACTAGGGACAGGGGACACTGAAGCTTTCTTT CASSSLGTGDTEAFF TRBV7-9*01 TRBJ1-1*01 30.0 673.0 CAGGETSYDKVIF_CASSSLGTGDTEAFF 11 5106 BZLF1-190-197 EBV 0.55 2156 NEG 116 4990 7 EBV BZLF1 RAKFKQLL transitional T cells between effector and memory populations PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-B*08:01 B2M MHCI -9214 chip0423_270098 -1.41 10.73 Chip2 T1D_4 T1D TGTGGAGCAGACCCCAGGAATCAGGGAGCCCAGAAGCTGGTATTT CGADPRNQGAQKLVF TRAV34*01 TRAJ54*01 32.0 1669.0 TGTGCCAGCAGTTTTCTCGGGACAGGTCTCAACGAGCAGTACTTC CASSFLGTGLNEQYF TRBV28*01 TRBJ2-7*01 1.0 60.0 CGADPRNQGAQKLVF_CASSFLGTGLNEQYF 1 4946 INS-MAL-8 INS 0.45 38 INS-MAL-8 123 4823 3 HomoSapiens INS MALWMRLL Naive T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-B*08:01 B2M MHCI -9215 chip0423_246375 -0.79 8.03 Chip2 T1D_6 T1D TGTGCCGTGAACATAAGGAACCAGGGAGGAAAGCTTATCTTC CAVNIRNQGGKLIF TRAV12-2*01 TRAJ23*01 21.0 914.0 TGCGCCAGCAGCCAAGATGGGGGTGCCTCCTCTGGTCAGCCCCAGCATTTT CASSQDGGASSGQPQHF TRBV4-1*01 TRBJ1-5*01 52.0 1765.0 CAVNIRNQGGKLIF_CASSQDGGASSGQPQHF 1 11566 MART1-A27L MART1 0.57 16 MART1-A27L 141 11425 3 HomoSapiens MART1 ELAGIGILTV Naive T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*02:01 B2M MHCI -9216 chip0423_643013 -2.24 10.91 Chip2 T1D_4 T1D TGTGCCGTGGGATCAGATGGCCAGAAGCTGCTCTTT CAVGSDGQKLLF TRAV12-2*01 TRAJ16*01 19.0 1692.0 TGTGCCAGCAGACCACTCTCGGTGGTCGCCCTGTCCTTC CASRPLSVVALSF TRBV6-2*01,TRBV6-3*01 TRBJ2-7*01 4.0 567.0 CAVGSDGQKLLF_CASRPLSVVALSF 1 4726 PGT-178 PGT 0.91 1480 PGT-178 115 4611 3 HomoSapiens PGT LLAGIGTVPI Naive T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*02:01 B2M MHCI -9217 chip0423_450263 11.51 11.63 Chip2 T1D_4 T1D TGTGCTGTGGGGGGTGGGGGAGGGGGCCAGAAGCTGGTATTT CAVGGGGGGQKLVF TRAV8-6*01 TRAJ54*01 7.0 532.0 TGTGCTGTGCGCCTTGGTGACGGAGCCAGCAGCTGGTATGT CAVRLGga?RSQQLVC TRAV8-6*01 TRAJ54*01 3.0 37.0 0.2 TGTGCCAGCAGCTTAACGGTTCTGGCAGGTCCAAACACTGAAGCTTTCTTT CASSLTVLAGPNTEAFF TRBV7-3*01 TRBJ1-1*01 63.0 1371.0 CAVGGGGGGQKLVF_CASSLTVLAGPNTEAFF 1 3051 BZLF1-190-197 EBV 0.85 2156 BZLF1-190-197 148 2903 9 EBV BZLF1 RAKFKQLL effector memory T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-B*08:01 B2M MHCI -9218 chip0423_856691 5.0 12.0 Chip2 healthy_4 healthy TGCAGCGTTGAAGATTACGGGGACAGGGGGCGAGAGACCCAGTACTTC CSVEDYGDRGRETQYF TRBV29-1*01 TRBJ2-5*01 249.0 14729.0 _CSVEDYGDRGRETQYF 1 4309 IGRP-211-219 IGRP 0.5 13 NEG 115 4194 6 HomoSapiens IGRP NLFLFLFAV central memory T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*02:01 B2M MHCI -9219 chip0423_526150 10.8 7.71 Chip2 T1D_5 T1D TGTGCCATTGCGCGGAGGGGAACTAATGAAAAACTGTTTTTT CAIARRGTNEKLFF TRAV24*01,TRAV14/DV4*01 TRAJ5*01 2.0 4.0 TGTGCCATTGCGCGGAGGGGAACTAATGAAAAACTGTTTTTT CAIARRGTNEKLFF TRBV28*01 TRBJ1-4*01 40.0 1396.0 CAIARRGTNEKLFF_CAIARRGTNEKLFF 1 5800 BZLF1-190-197 EBV 0.51 2156 BZLF1-190-197 160 5640 6 EBV BZLF1 RAKFKQLL central memory T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-B*08:01 B2M MHCI -9220 chip0423_565319 6.76 10.26 Chip2 healthy_3 healthy TGCGCTGATTACAGCAGTGCTTCCAAGATAATCTTG CADYSSASKIIL TRAV1-1*01 TRAJ3*01 17.0 1327.0 CADYSSASKIIL_ 1 7956 NP44-52 FLU 0.85 474 NEG 129 7827 7 InfluenzaA NP CTELKLSDY transitional T cells between effector and memory populations PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*01:01 B2M MHCI -9221 chip0423_289963 -4.32 11.64 Chip2 T1D_4 T1D TGTGCCGGGCTGTACGTGCGTAGCAACTATCAGTTAATCTGG CAGLYVRSNYQLIW TRAV39*01 TRAJ33*01 24.0 1015.0 CAGLYVRSNYQLIW_ 1 4246 GAD2-MMI-8 GAD65 0.9 40 NEG 128 4118 1 HomoSapiens GAD2 MMIARFKM Naive T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-B*08:01 B2M MHCI -9222 chip0423_254719 11.34 11.86 Chip2 T1D_4 T1D TGTGCCAGCAGCTTAGCGGTCGGAGAAGGGCCCCAACATTTT CASSLAVGEGPQHF TRBV7-9*01 TRBJ1-5*01 45.0 1351.0 _CASSLAVGEGPQHF 113 2863 BZLF1-190-197 EBV 0.95 2156 BZLF1-190-197 118 2745 9 EBV BZLF1 RAKFKQLL effector memory T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-B*08:01 B2M MHCI -9223 chip0423_187847 11.82 10.82 Chip2 T1D_5 T1D TGTGCCAGCAGCCCCGGGACAGGGAATTCACCCCTCCACTTT CASSPGTGNSPLHF TRBV7-9*01 TRBJ1-6*01 16.0 749.0 _CASSPGTGNSPLHF 1 2623 BZLF1-190-197 EBV 0.61 2156 NEG 140 2483 9 EBV BZLF1 RAKFKQLL effector memory T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-B*08:01 B2M MHCI -9224 chip0423_129351 -4.21 12.3 Chip2 T1D_4 T1D TGTGTGGTGAACAGAGATGACAAGATCCTCTTT CVVNRDDKILF TRAV12-1*01 TRAJ30*01 1.0 67.0 TGTGCCAGCGGAGACACTGAGCAGTTCTTC CASGDTEQFF TRBV9*01 TRBJ2-1*01 17.0 1236.0 CVVNRDDKILF_CASGDTEQFF 1 5637 POL-132-140 HIV 1.0 37 NEG 120 5517 1 HIV-1 POL LVGPTPVNI Naive T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*02:01 B2M MHCI -9225 chip0423_24875 -3.74 12.09 Chip2 T1D_4 T1D TGTGCCAGCATGGGGGGGCCAGGGGGCCTGAACACTGAAGCTTTCTTT CASMGGPGGLNTEAFF TRBV7-9*01 TRBJ1-1*01 26.0 895.0 _CASMGGPGGLNTEAFF 1 3740 GFAP-HLK-8 GFAP 0.73 28 NEG 106 3634 1 HomoSapiens GFAP HLKRNIVV Naive T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-B*08:01 B2M MHCI -9226 chip0423_5651 -3.57 11.73 Chip2 T1D_4 T1D TGTGCCGTGACTGGCGACTACAAGCTCAGCTTT CAVTGDYKLSF TRAV12-2*01 TRAJ20*01 43.0 4079.0 TGCAGTGCTAGGACTGGCAATGAGCAGTTCTTC CSARTGNEQFF TRBV20-1*01 TRBJ2-1*01 28.0 3151.0 CAVTGDYKLSF_CSARTGNEQFF 1 5121 PGT-178 PGT 0.5 1480 NEG 149 4972 1 HomoSapiens PGT LLAGIGTVPI Naive T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*02:01 B2M MHCI -9227 chip0423_605193 -3.62 10.62 Chip2 T1D_4 T1D TGTGCCAGCAGTCCACTAGCTAACAATGAGCAGTTCTTC CASSPLANNEQFF TRBV12-3*01,TRBV12-4*01 TRBJ2-1*01 30.0 2355.0 _CASSPLANNEQFF 1 4056 PGT-178 PGT 0.83 1480 PGT-178 110 3946 2 HomoSapiens PGT LLAGIGTVPI Naive T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*02:01 B2M MHCI -9228 chip0423_751549 9.97 10.53 Chip2 T1D_6 T1D TGTGCAGAGAGTATCGGCATGCTCATCTTT CAESIGMLIF TRAV5*01 TRAJ34*01 1.0 11.0 TGCAGCGTGGGGACAGGGGGCACTAATGAAAAACTGTTTTTT CSVGTGGTNEKLFF TRBV29-1*01 TRBJ1-4*01 5.0 102.0 CAESIGMLIF_CSVGTGGTNEKLFF 1 5515 EBV-BLMF1 EBV 0.44 2531 NEG 145 5370 9 EBV BLMF1 GLCTLVAML effector memory T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*02:01 B2M MHCI -9229 chip0423_491740 12.1 13.58 Chip2 T1D_4 T1D TGCATCGTCAGAGAGGGAGGAGGTGCTGACGGACTCCCCTTT CIVREGGGADGLPF TRAV26-1*01 TRAJ45*01 3.0 110.0 TGTGCCAGCAGCTTAGCGGTCGGAGAAGGGCCCCAGCATTTT CASSLAVGEGPQHF TRBV7-9*01 TRBJ1-5*01 38.0 1706.0 CIVREGGGADGLPF_CASSLAVGEGPQHF 21 1552 BZLF1-190-197 EBV 0.8 2156 NEG 136 1416 11 EBV BZLF1 RAKFKQLL effector T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-B*08:01 B2M MHCI -9230 chip0423_96332 -3.62 12.79 Chip2 T1D_4 T1D TGTGCTGTGAGACACAACACAGGCAAACTAATCTTT CAVRHNTGKLIF TRAV3*01 TRAJ37*01 11.0 669.0 TGTGCCAGCAGCCCCGAAGGGGGGCTAGTTTCTGTCGGGGAGCTGTTTTTT CASSPEGGLVSVGELFF TRBV7-8*01 TRBJ2-2*01 17.0 695.0 CAVRHNTGKLIF_CASSPEGGLVSVGELFF 1 3861 MART1-A27L MART1 0.83 16 NEG 110 3751 1 HomoSapiens MART1 ELAGIGILTV Naive T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*02:01 B2M MHCI -9231 chip0423_105249 -3.67 13.01 Chip2 T1D_6 T1D TGTGCCAGCAGCTTTGGAGGGGCGGGAAACACCATATATTTT CASSFGGAGNTIYF TRBV13*01 TRBJ1-3*01 40.0 1808.0 _CASSFGGAGNTIYF 1 3674 PGT-178 PGT 0.94 1480 PGT-178 120 3554 1 HomoSapiens PGT LLAGIGTVPI Naive T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*02:01 B2M MHCI -9232 chip0423_148374 13.58 11.41 Chip2 T1D_4 T1D TGTGCCAGCAGCTCAGGGACAGGTGAGGGGTATGAGCAGTTCTTC CASSSGTGEGYEQFF TRBV7-3*01 TRBJ2-1*01 9.0 484.0 _CASSSGTGEGYEQFF 2 2556 BZLF1-190-197 EBV 0.9 2156 BZLF1-190-197 125 2431 12 EBV BZLF1 RAKFKQLL effector T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-B*08:01 B2M MHCI -9233 chip0423_58442 -1.89 8.01 Chip2 T1D_6 T1D TGTGCTTTCATGGAAGGAGGAAGCCAAGGAAATCTCATCTTT CAFMEGGSQGNLIF TRAV38-1*01 TRAJ42*01 26.0 1116.0 TGCGCCAGTAGTCCCTTAAATTATTCACCCCTCCACTTT CASSPLNYSPLHF TRBV19*01 TRBJ1-6*01 5.0 422.0 CAFMEGGSQGNLIF_CASSPLNYSPLHF 1 7621 ZNT8-145-153 ZNT8 0.5 14 NEG 131 7490 4 HomoSapiens ZNT8 LLSILCIWV Naive T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*02:01 B2M MHCI -9234 chip0423_339042 9.52 10.38 Chip2 T1D_5 T1D _ 6746 4068 BZLF1-190-197 EBV 0.61 2156 NEG 139 3929 9 EBV BZLF1 RAKFKQLL effector memory T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-B*08:01 B2M MHCI -9235 chip0423_261024 6.6 11.48 Chip2 T1D_6 T1D TGTGCCAGTAGTGTCCGGTCCGCCTACGAGCAGTACTTC CASSVRSAYEQYF TRBV19*01 TRBJ2-7*01 61.0 2641.0 _CASSVRSAYEQYF 1 6333 M1 FLU 0.44 1250 NEG 173 6160 7 InfluenzaA M1 GILGFVFTL transitional T cells between effector and memory populations PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*02:01 B2M MHCI -9236 chip0423_24384 -3.17 13.23 Chip2 healthy_3 healthy _ 6746 3369 MART1-ALA MART1 0.79 269 NEG 116 3253 1 HomoSapiens MART1 ALAGIGILTV Naive T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*02:01 B2M MHCI -9237 chip0423_758091 12.34 6.44 Chip2 T1D_5 T1D TGTGCCAGCAGTTTTACAGGACAAGTGAACACTGAAGCTTTCTTT CASSFTGQVNTEAFF TRBV12-3*01,TRBV12-4*01 TRBJ1-1*01 30.0 1525.0 _CASSFTGQVNTEAFF 1 5825 NP140-148 FLU 0.5 102 NEG 140 5685 10 InfluenzaA NP HSNLNDATY effector memory T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*01:01 B2M MHCI -9238 chip0423_153836 7.2 12.46 Chip2 healthy_3 healthy TGTGCCCCTGCATCAGGAGGAAGCTACATACCTACATTT CAPASGGSYIPTF TRAV24*01 TRAJ6*01 38.0 2867.0 TGTGCCAGCTGCCGGGACGGGACCTACGAGCAGTACTTC CASCRDGTYEQYF TRBV10-3*01 TRBJ2-7*01 9.0 608.0 CAPASGGSYIPTF_CASCRDGTYEQYF 10 4340 NP44-52 FLU 0.75 474 NP44-52 128 4212 7 InfluenzaA NP CTELKLSDY transitional T cells between effector and memory populations PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*01:01 B2M MHCI -9239 chip0423_394694 7.61 10.67 Chip2 T1D_4 T1D TGAGCTCTGAGTTTTTTCGCATAATGCAGGCAACATGCTCACCTTT *ALSFFAta??atAGNMLTF TRAV19*01 TRAJ39*01 28.0 1278.0 TGTGCCAGCAGTTTTGACGGCGTCTATGGCTACACCTTC CASSFDGVYGYTF TRBV28*01 TRBJ1-2*01 22.0 1132.0 *ALSFFAta??atAGNMLTF_CASSFDGVYGYTF 1 8428 EBV-LMP1-1 EBV 0.64 237 NEG 150 8278 7 EBV LMP1 YLLEMLWRL transitional T cells between effector and memory populations PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*02:01 B2M MHCI -9240 chip0423_302881 4.84 9.96 Chip2 healthy_3 healthy TGTGTTGTGAGGGGTAATGCTGGCCACATGCTCACCTTT CVVRGNAGHMLTF TRAV8-2*01 TRAJ39*01 26.0 1996.0 CVVRGNAGHMLTF_ 1 4232 M1 FLU 0.5 1250 NEG 107 4125 6 InfluenzaA M1 GILGFVFTL central memory T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*02:01 B2M MHCI -9241 chip0423_213775 9.88 10.88 Chip2 T1D_4 T1D TGCATCCTCCCCCTTGCTGGTGGTACTAGCTATGGAAAGCTGACATTT CILPLAGGTSYGKLTF TRAV26-2*01 TRAJ52*01 72.0 3923.0 CILPLAGGTSYGKLTF_ 55 4424 EBNA3A-193-201 EBV 0.63 1022 EBNA3A-193-201 139 4285 9 EBV EBNA3A FLRGRAYGL effector memory T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-B*08:01 B2M MHCI -9242 chip0423_805163 -2.89 13.59 Chip2 T1D_5 T1D TGTGCTGTGAGTGAGAAGGCCAGCCGTGCTTCCAAGATAATCTTT CAVSEKASRASKIIF TRAV8-4*01 TRAJ3*01 16.0 663.0 TGTGCCAGCAGCTGGGGGGGGGTGTCCTCCTACGAACAGTACTTC CASSWGGVSSYEQYF TRBV5-5*01 TRBJ2-7*01 1.0 35.0 CAVSEKASRASKIIF_CASSWGGVSSYEQYF 1 3032 EBNA3A-193-201 EBV 0.71 1022 NEG 136 2896 1 EBV EBNA3A FLRGRAYGL Naive T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-B*08:01 B2M MHCI -9243 chip0423_803438 -4.01 12.92 Chip2 T1D_6 T1D TGTGCCTTTAGTCCCGACTACAAGCTCAGCTTT CAFSPDYKLSF TRAV24*01 TRAJ20*01 1.0 17.0 TGTGCCCGCCGCGTTGTGGGGGACTCCTACAATGAGTAATTCTTC CARRVVGDSYNE*FF TRBV9*01 TRBJ2-1*01 4.0 28.0 CAFSPDYKLSF_CARRVVGDSYNE*FF 1 4115 IAPP-5-13 IAPP 0.55 30 NEG 133 3982 1 HomoSapiens IAPP KLQVFLIVL Naive T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*02:01 B2M MHCI -9244 chip0423_24946 11.42 12.28 Chip2 T1D_5 T1D TGTGCAATGAGAGAGGGCGAGGGTGGAGGCTTCAACACTATCTTT CAMREGEGGGFNTIF TRAV14/DV4*01 TRAJ9*01 40.0 1570.0 CAMREGEGGGFNTIF_ 1 2318 BZLF1-190-197 EBV 0.67 2156 NEG 125 2193 11 EBV BZLF1 RAKFKQLL effector T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-B*08:01 B2M MHCI -9245 chip0423_473301 8.08 11.45 Chip2 T1D_4 T1D TGTGCTACGGAGGGGGAGTCAGGATACAGCACCCTCACCTTT CATEGESGYSTLTF TRAV17*01 TRAJ11*01 5.0 127.0 CATEGESGYSTLTF_ 1 5953 EBV-LMP2-FLY EBV 0.78 355 NEG 114 5839 7 EBV LMP2 FLYALALLL transitional T cells between effector and memory populations PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*02:01 B2M MHCI -9246 chip0423_398261 13.38 7.82 Chip2 T1D_4 T1D TGTGCCAGCAGCTTAGCGGTCGGAGAAGGGCCCCAGCATTTT CASSLAVGEGPQHF TRBV7-9*01 TRBJ1-5*01 36.0 1806.0 _CASSLAVGEGPQHF 113 2970 BZLF1-190-197 EBV 0.65 2156 NEG 141 2829 10 EBV BZLF1 RAKFKQLL effector memory T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-B*08:01 B2M MHCI -9247 chip0423_321919 7.48 9.75 Chip2 T1D_5 T1D TGTGCCAGCAGTCCCCCGGGGAGAAATGAAAAACTGTTTTTT CASSPPGRNEKLFF TRAV9-2*01 TRAJ5*01 2.0 12.0 TGTGCCAGCAGTCCCCCGGGGAGAAATGAAAAACTGTTTTTT CASSPPGRNEKLFF TRBV12-3*01,TRBV12-4*01 TRBJ1-4*01 84.0 3636.0 CASSPPGRNEKLFF_CASSPPGRNEKLFF 11 7023 BZLF1-190-197 EBV 1.0 2156 BZLF1-190-197 129 6894 8 EBV BZLF1 RAKFKQLL effector memory T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-B*08:01 B2M MHCI -9248 chip0423_768494 6.82 12.96 Chip2 healthy_3 healthy TGTGCCTGGAGTCCCTGGGACAGGGCGGGTCAGGTGAACACTGAAGCTTTCTTT CAWSPWDRAGQVNTEAFF TRBV30*01 TRBJ1-1*01 25.0 598.0 _CAWSPWDRAGQVNTEAFF 1 5266 M1 FLU 0.5 1250 NEG 120 5146 7 InfluenzaA M1 GILGFVFTL transitional T cells between effector and memory populations PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*02:01 B2M MHCI -9249 chip0423_491108 14.27 10.41 Chip2 T1D_5 T1D _ 6746 2359 BZLF1-190-197 EBV 1.0 2156 NEG 135 2224 12 EBV BZLF1 RAKFKQLL effector T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-B*08:01 B2M MHCI -9250 chip0423_468898 7.94 13.4 Chip2 T1D_6 T1D TCTCCTGTGGGGTCCCTGGCTCTCGCCTCCCCGGCAAACTATTCTTC SPVGSLAct?RLPGKLFF TRAV8-3*01 TRAJ37*01 5.0 55.0 SPVGSLAct?RLPGKLFF_ 1 4425 NP380-388 FLU 0.58 60 NEG 137 4288 7 InfluenzaA NP ELRSRYWAI transitional T cells between effector and memory populations PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-B*08:01 B2M MHCI -9251 chip0423_114242 -1.57 7.48 Chip2 T1D_5 T1D TGTGCTGTGGGCCGGATGGATAGCAGCTATAAATTGATCTTC CAVGRMDSSYKLIF TRAV8-3*01 TRAJ12*01 1.0 23.0 TGTGCCAGCAGACCATCGGGGGGGGGCTACGAGCAGTACTTC CASRPSGGGYEQYF TRBV28*01 TRBJ2-7*01 46.0 3117.0 CAVGRMDSSYKLIF_CASRPSGGGYEQYF 1 6818 G6PC2-LTS-10 IGRP 0.83 59 G6PC2-LTS-10 134 6684 3 HomoSapiens G6PC2 LTSLTILQLY Naive T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*01:01 B2M MHCI -9252 chip0423_683596 -0.9 9.15 Chip2 T1D_6 T1D TGTGCCAGCAGTCCTCCCGAGGGGGACTATGGCTACACCTTC CASSPPEGDYGYTF TRBV28*01 TRBJ1-2*01 52.0 3149.0 _CASSPPEGDYGYTF 1 5597 G6PC2-NLI-9 IGRP 0.55 7 NEG 134 5463 4 HomoSapiens G6PC2 NLIFKWKSI Naive T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-B*08:01 B2M MHCI -9253 chip0423_441295 -3.42 8.58 Chip2 T1D_4 T1D TGTGCCAGCACTTGGGTACGAGCGCAGCCCCAGCATTTT CASTWVRAQPQHF TRBV6-2*01,TRBV6-3*01 TRBJ1-5*01 34.0 1481.0 _CASTWVRAQPQHF 1 7669 ZNT8-YAY-8 ZNT8 0.67 54 ZNT8-YAY-8 119 7550 2 HomoSapiens ZNT8 YAYAKWKL Naive T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-B*08:01 B2M MHCI -9254 chip0423_302064 11.14 10.24 Chip2 healthy_3 healthy TGTGCCAGCAGTTTACGGGGGCTGGGGAGCAATCAGCCCCAGCATTTT CASSLRGLGSNQPQHF TRBV28*01 TRBJ1-5*01 28.0 1171.0 _CASSLRGLGSNQPQHF 1 3153 EBV-BRLF1 EBV 0.65 1264 EBV-BRLF1 123 3030 9 EBV BRLF1 YVLDHLIVV effector memory T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*02:01 B2M MHCI -9255 chip0423_255091 11.15 11.83 Chip2 T1D_4 T1D TGCAGCGTTGGAACGGGGGGAACTAATGAAAAACTGTTTTTT CSVGTGGTNEKLFF TRBV29-1*01 TRBJ1-4*01 97.0 2455.0 _CSVGTGGTNEKLFF 638 3009 EBV-BLMF1 EBV 0.5 2531 NEG 145 2864 9 EBV BLMF1 GLCTLVAML effector memory T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*02:01 B2M MHCI -9256 chip0423_48934 13.98 13.35 Chip2 T1D_4 T1D TGTGCCAGCAGCTTAACGGTTCTGGCAGGTCCAAACACTGAAGCTTTCTTT CASSLTVLAGPNTEAFF TRBV7-3*01 TRBJ1-1*01 91.0 3401.0 _CASSLTVLAGPNTEAFF 32 1922 BZLF1-190-197 EBV 0.73 2156 NEG 126 1796 12 EBV BZLF1 RAKFKQLL effector T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-B*08:01 B2M MHCI -9257 chip0423_20947 6.46 11.75 Chip2 healthy_3 healthy TGTGCAGGAGTAGATGGAGGAAGCCAAGGAAATCTCATCTTT CAGVDGGSQGNLIF TRAV27*01 TRAJ42*01 32.0 652.0 TGTGCCAGTAGTATCAGGAGCTCCTACGAGCAGTACTTC CASSIRSSYEQYF TRBV19*01 TRBJ2-7*01 42.0 2324.0 CAGVDGGSQGNLIF_CASSIRSSYEQYF 1 5960 M1 FLU 0.77 1250 NEG 97 5863 7 InfluenzaA M1 GILGFVFTL transitional T cells between effector and memory populations PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*02:01 B2M MHCI -9258 chip0423_582369 6.72 13.35 Chip2 T1D_6 T1D TGTGCTGTGAGAGACATCCATACTGGAGGCTTCAAAACTATCTTT CAVRDIHTGGFKTIF TRAV3*01 TRAJ9*01 54.0 1949.0 CAVRDIHTGGFKTIF_ 3 5750 M1 FLU 0.95 1250 M1 157 5593 7 InfluenzaA M1 GILGFVFTL transitional T cells between effector and memory populations PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*02:01 B2M MHCI -9259 chip0423_440457 -1.93 10.36 Chip2 T1D_4 T1D TGTGCAGTACGGGCCCAAGACCACCAAAGCTCATTTTA CAVRAQg?aPPKLIL TRAV13-1*01 TRAJ42*01 2.0 123.0 CAVRAQg?aPPKLIL_ 1 4936 GP160-311-320 HIV 0.56 109 NEG 132 4804 3 HIV-1 GP160 RGPGRAFVTI Naive T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*02:01 B2M MHCI -9260 chip0423_173061 -2.92 8.09 Chip2 T1D_5 T1D _ 6746 5289 G6PC2-NLI-8 IGRP 0.62 32 NEG 98 5191 2 HomoSapiens G6PC2 NLIFKWIL Naive T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-B*08:01 B2M MHCI -9261 chip0423_129378 -3.8 12.08 Chip2 T1D_5 T1D TCTGCTGTGTGTCGCGTCTTCTCGCTCCGCTTC SAVCRVFSLRF TRAV12-1*01,TRAV21*01 TRAJ20*01 5.0 348.0 TGTGCCAGCAGCTTGATCCGGGACAGGGGAAACACCATATATTTT CASSLIRDRGNTIYF TRBV5-6*01 TRBJ1-3*01 10.0 134.0 SAVCRVFSLRF_CASSLIRDRGNTIYF 1 3318 INS-GSH-9 INS 0.93 19 INS-GSH-9 128 3190 1 HomoSapiens INS GSHLVEALY Naive T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*01:01 B2M MHCI -9262 chip0423_791400 13.39 7.29 Chip2 T1D_6 T1D _ 6746 5544 EBNA3A-193-201 EBV 0.67 1022 NEG 119 5425 10 EBV EBNA3A FLRGRAYGL effector memory T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-B*08:01 B2M MHCI -9263 chip0423_464859 13.29 7.8 Chip2 T1D_5 T1D TGTGCAGCTCAGGAAACCTCCTACGACAAGGTGATATTT CAAQETSYDKVIF TRAV13-1*01 TRAJ50*01 21.0 1302.0 TGTGCCAGCTCACCATGGGACAGGGATTCCAGCTATGGCTACACCTTC CASSPWDRDSSYGYTF TRBV18*01 TRBJ1-2*01 34.0 999.0 CAAQETSYDKVIF_CASSPWDRDSSYGYTF 1 2455 BZLF1-190-197 EBV 1.0 2156 NEG 123 2332 10 EBV BZLF1 RAKFKQLL effector memory T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-B*08:01 B2M MHCI -9264 chip0423_187728 10.84 11.72 Chip2 T1D_4 T1D TGCATCGTCAGAGAGGGAGGAGGTGCTGACGGACTCACCTTT CIVREGGGADGLTF TRAV26-1*01 TRAJ45*01 29.0 2082.0 TGTGCCAGCAGCTTAGCGGTCGGAGAAGGGCCCCAGCATTTT CASSLAVGEGPQHF TRBV7-9*01 TRBJ1-5*01 23.0 1147.0 CIVREGGGADGLTF_CASSLAVGEGPQHF 68 3420 BZLF1-190-197 EBV 0.82 2156 BZLF1-190-197 143 3277 9 EBV BZLF1 RAKFKQLL effector memory T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-B*08:01 B2M MHCI -9265 chip0423_777611 -3.85 11.14 Chip2 T1D_4 T1D TGTGCCAGCAGCTTGGCAGCGGCGCCCTACAATGAGCAGTTCTTC CASSLAAAPYNEQFF TRBV5-6*01 TRBJ2-1*01 8.0 947.0 _CASSLAAAPYNEQFF 1 3932 ZNT8-PTE-9 ZNT8 0.62 18 ZNT8-PTE-9 117 3815 1 HomoSapiens ZNT8 PTEKGANEY Naive T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*01:01 B2M MHCI -9266 chip0423_523737 -3.53 13.64 Chip2 T1D_6 T1D TGCATCCCTCAGGAACCTACAAATACATCTTT CIPQEc?cYKYIF TRAV26-2*01 TRAJ40*01 1.0 187.0 CIPQEc?cYKYIF_ 1 3748 PGT-178 PGT 0.67 1480 NEG 120 3628 1 HomoSapiens PGT LLAGIGTVPI Naive T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*02:01 B2M MHCI -9267 chip0423_131493 -3.58 10.36 Chip2 healthy_3 healthy TGTGCCAGCTCACCACCGGACACAGATACGCAGTATTTT CASSPPDTDTQYF TRBV18*01 TRBJ2-3*01 19.0 696.0 _CASSPPDTDTQYF 1 4998 PB1-590-599 FLU 0.42 37 NEG 95 4903 2 InfluenzaA PB1 LVSDGGPNLY Naive T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*01:01 B2M MHCI -9268 chip0423_35105 -4.96 9.59 Chip2 T1D_6 T1D TGTGTGGTGAACAACGGATACAGCACCCTCACCTTT CVVNNGYSTLTF TRAV12-1*01 TRAJ11*01 19.0 2001.0 TGCGCCAGCAGCCAAGATCCTTCCTACGAGCAGTACTTC CASSQDPSYEQYF TRBV4-1*01 TRBJ2-7*01 1.0 48.0 CVVNNGYSTLTF_CASSQDPSYEQYF 1 5312 G6PC2-LTS-10 IGRP 0.78 59 G6PC2-LTS-10 126 5186 2 HomoSapiens G6PC2 LTSLTILQLY Naive T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*01:01 B2M MHCI -9269 chip0423_594039 7.03 12.56 Chip2 T1D_6 T1D TGCGCTGTGTGCGCCTGCGATGGGGGAAGCCAAGGAAATCTCATCTTT CAVCACDGGSQGNLIF TRAV1-1*01 TRAJ42*01 17.0 427.0 CAVCACDGGSQGNLIF_ 1 5177 GAD2-MAA-10 GAD65 0.42 6 NEG 132 5045 7 HomoSapiens GAD2 MAALPRLIAF transitional T cells between effector and memory populations PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-B*08:01 B2M MHCI -9270 chip0423_217380 -3.03 8.99 Chip2 T1D_5 T1D TGCGCCAGCAGCCAAGATTTTAATGAGCAGTTCTTC CASSQDFNEQFF TRBV4-1*01 TRBJ2-1*01 36.0 2738.0 _CASSQDFNEQFF 1 7338 BZLF1-190-197 EBV 1.0 2156 NEG 124 7214 2 EBV BZLF1 RAKFKQLL Naive T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-B*08:01 B2M MHCI -9271 chip0423_554369 -5.17 9.37 Chip2 healthy_3 healthy TGTGCCAGCAGTCCCCGCCCAGGGTATCACGAGCAGTACTTC CASSPRPGYHEQYF TRBV27*01 TRBJ2-7*01 38.0 2424.0 _CASSPRPGYHEQYF 1 6076 GAD65-114-122 GAD65 0.68 63 GAD65-114-122 126 5950 2 HomoSapiens GAD65 VMNILLQYV Naive T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*02:01 B2M MHCI -9272 chip0423_500589 9.52 8.63 Chip2 T1D_4 T1D TGTGCCAGCAGCCAAGTCAACAACCCGGGGGATGGCTACACCTTC CASSQVNNPGDGYTF TRBV14*01 TRBJ1-2*01 16.0 413.0 _CASSQVNNPGDGYTF 94 4986 EBNA3A-158-166 EBV 0.75 444 NEG 150 4836 8 EBV EBNA3A QAKWRLQTL effector memory T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-B*08:01 B2M MHCI -9273 chip0423_484515 8.98 11.88 Chip2 T1D_4 T1D TGTGCTCTAAGGGCTTGTATTCAGGAGGTGGTGCTGTCGGACTCATCTTT CALRACIQg?aGGAVGLIF TRAV16*01 TRAJ45*01 12.0 429.0 TGCAGTGCTACTAACCAGTACGACGGACCCGACACTGAAGCTTTCTTT CSATNQYDGPDTEAFF TRBV20-1*01 TRBJ1-1*01 28.0 688.0 CALRACIQg?aGGAVGLIF_CSATNQYDGPDTEAFF 1 3520 BZLF1-190-197 EBV 0.41 2156 NEG 158 3362 7 EBV BZLF1 RAKFKQLL transitional T cells between effector and memory populations PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-B*08:01 B2M MHCI -9274 chip0423_477311 -2.26 10.43 Chip2 T1D_4 T1D TGTGCCGTGAGTAATGCAGGCAACATGCTCACCTTT CAVSNAGNMLTF TRAV12-2*01 TRAJ39*01 19.0 2019.0 TGTGCCAGCAGCCGGCGGACAGGGGGCACAGATACGCAGTATTTT CASSRRTGGTDTQYF TRBV27*01 TRBJ2-3*01 22.0 1074.0 CAVSNAGNMLTF_CASSRRTGGTDTQYF 1 5310 PGT-178 PGT 0.74 1480 PGT-178 111 5199 4 HomoSapiens PGT LLAGIGTVPI Naive T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*02:01 B2M MHCI -9275 chip0423_262462 6.36 13.77 Chip2 healthy_3 healthy TGTGCCCCTGCATCAGGAGGAAGCTACATACCTACATTT CAPASGGSYIPTF TRAV24*01 TRAJ6*01 25.0 1328.0 TGTGCCAGCTGCCGGGACGGGACCTACGAGCAGTACTTC CASCRDGTYEQYF TRBV10-3*01 TRBJ2-7*01 66.0 3759.0 CAPASGGSYIPTF_CASCRDGTYEQYF 10 4680 NP44-52 FLU 0.62 474 NP44-52 129 4551 7 InfluenzaA NP CTELKLSDY transitional T cells between effector and memory populations PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*01:01 B2M MHCI -9276 chip0423_95227 -4.67 9.48 Chip2 healthy_3 healthy TGTGCCAGCTCACGTTCTAGCGGGGTTTACGAGCAGTACTTC CASSRSSGVYEQYF TRBV28*01 TRBJ2-7*01 54.0 3437.0 _CASSRSSGVYEQYF 1 5736 PGT-178 PGT 0.69 1480 PGT-178 121 5615 2 HomoSapiens PGT LLAGIGTVPI Naive T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*02:01 B2M MHCI -9277 chip0423_204385 -3.63 9.73 Chip2 T1D_4 T1D TGTGCAATGAGCCTATCTAACTTTGGAAATGAGAAATTAACCTTT CAMSLSNFGNEKLTF TRAV12-3*01 TRAJ48*01 62.0 2310.0 TGTGCCAGCAGCACTCAGCGGGGGGGCTCCACAGATACGCAGTATTTT CASSTQRGGSTDTQYF TRBV9*01 TRBJ2-3*01 20.0 694.0 CAMSLSNFGNEKLTF_CASSTQRGGSTDTQYF 1 5244 PGT-178 PGT 0.63 1480 PGT-178 126 5118 2 HomoSapiens PGT LLAGIGTVPI Naive T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*02:01 B2M MHCI -9278 chip0423_773951 11.1 7.62 Chip2 T1D_5 T1D TGTGCCAGCAGCTTTCTAGGGGCTACTGGAAACACCATATATTTT CASSFLGATGNTIYF TRBV7-9*01 TRBJ1-3*01 14.0 337.0 _CASSFLGATGNTIYF 1 4560 BZLF1-190-197 EBV 0.57 2156 NEG 133 4427 10 EBV BZLF1 RAKFKQLL effector memory T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-B*08:01 B2M MHCI -9279 chip0423_674440 -2.36 7.52 Chip2 healthy_4 healthy TGTGCCAGTAGGGGACCAGGGGCTTCCTCCTACAATGAGCAGTTCTTC CASRGPGASSYNEQFF TRBV19*01 TRBJ2-1*01 20.0 1537.0 _CASRGPGASSYNEQFF 1 7273 IGRP-152-160-WLI IGRP 0.56 27 NEG 108 7165 2 HomoSapiens IGRP FLWSVFWLI Naive T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*02:01 B2M MHCI -9280 chip0423_215801 -4.56 9.03 Chip2 T1D_6 T1D _ 6746 5556 GAD2-CLE-9 GAD65 0.5 4 NEG 148 5408 2 HomoSapiens GAD2 CLELAEYLY Naive T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*01:01 B2M MHCI -9281 chip0423_167852 -3.33 13.5 Chip2 T1D_4 T1D TGTGCTCTGAGTCCGAACACCGGTAACCAGTTCTATTTT CALSPNTGNQFYF TRAV19*01 TRAJ49*01 47.0 3700.0 TGTGCCAGCAGTTTGCTCCTTTCTACCTACGAGCAGTACTTC CASSLLLSTYEQYF TRBV28*01 TRBJ2-7*01 4.0 279.0 CALSPNTGNQFYF_CASSLLLSTYEQYF 1 3512 EBV-LMP1-2 EBV 0.67 41 NEG 111 3401 1 EBV LMP1 YLQQNWWTL Naive T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*02:01 B2M MHCI -9282 chip0423_359198 14.08 7.85 Chip2 T1D_4 T1D TGTGCTGTGCGTGCTGGCGCCGGCGCCCTGCCGCTCGCATTT CAVRAGAGALPLAF TRAV8-6*01 TRAJ54*01 17.0 1328.0 TGTGCCAGCAGCTTAACGGTTCTGGCAGGTCCAAACACTGAAGCTTTCTTT CASSLTVLAGPNTEAFF TRBV7-3*01 TRBJ1-1*01 71.0 2504.0 CAVRAGAGALPLAF_CASSLTVLAGPNTEAFF 1 3440 BZLF1-190-197 EBV 1.0 2156 NEG 150 3290 10 EBV BZLF1 RAKFKQLL effector memory T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-B*08:01 B2M MHCI -9283 chip0423_264823 8.59 9.37 Chip2 T1D_4 T1D TGCAGTGCTACTACCCCGTACGACGGACCCGACACTGAAGCTTTCTTT CSATTPYDGPDTEAFF TRBV20-1*01 TRBJ1-1*01 8.0 665.0 _CSATTPYDGPDTEAFF 1 4876 BZLF1-190-197 EBV 0.48 2156 NEG 161 4715 8 EBV BZLF1 RAKFKQLL effector memory T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-B*08:01 B2M MHCI -9284 chip0423_261731 -2.1 12.67 Chip2 T1D_4 T1D TGTGCTCTGGAGGACTCTGGGGCTGGGAGTTACCAACTCACTTTC CALEDSGAGSYQLTF TRAV9-2*01 TRAJ28*01 83.0 4075.0 TGGGCCAGCAGTTCTCAGGACATCAACTATAATTCACCCCTCCACTTT WASSSQDINYNSPLHF TRBV6-5*01 TRBJ1-6*01 72.0 2053.0 CALEDSGAGSYQLTF_WASSSQDINYNSPLHF 1 3885 NP44-52 FLU 0.54 474 NEG 104 3781 1 InfluenzaA NP CTELKLSDY Naive T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*01:01 B2M MHCI -9285 chip0423_597633 6.78 11.39 Chip2 healthy_3 healthy TGTGCTGTGGGTTCTCCTAATTATGGAGGAAGCCAAGGAAATCTCATCTTT CAVGSPNYGGSQGNLIF TRAV36/DV7*01 TRAJ42*01 1.0 39.0 TGTGCCGTGAGGCAAAGCTGCAGGCAACAAGCTAACTTTT CAVRQStg??caGNKLTF TRAV8-1*01 TRAJ17*01 2.0 36.0 0.67 TGTGCCAGCAGCTTAGGTGGGCGGCCATCAAATGGCTACACCTTT CASSLGGRPSNGYTF TRBV7-6*01 TRBJ1-2*01 1.0 42.0 CAVGSPNYGGSQGNLIF_CASSLGGRPSNGYTF 1 6364 NP44-52 FLU 0.54 474 NP44-52 121 6243 7 InfluenzaA NP CTELKLSDY transitional T cells between effector and memory populations PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*01:01 B2M MHCI -9286 chip0423_245449 11.9 7.13 Chip2 T1D_5 T1D TGTGCTAGTGGTCCGGACATATCCTACTCCTACGAGCAGTACTTC CASGPDISYSYEQYF TRBV12-5*01 TRBJ2-7*01 13.0 637.0 _CASGPDISYSYEQYF 10 4324 BZLF1-190-197 EBV 0.87 2156 NEG 127 4197 10 EBV BZLF1 RAKFKQLL effector memory T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-B*08:01 B2M MHCI -9287 chip0423_866621 6.66 14.37 Chip2 healthy_3 healthy TCTGCTCTGCACGCCGCGCGCCACCGGTGCCCAGTTCTGTTTT SALHAAR??cTGAQFCF TRAV20*01 TRAJ49*01 20.0 1001.0 TGTGCCAGTAGTCCACTCCTAGCGACCCAAGGCTACGAGCAGTACTTC CASSPLLATQGYEQYF TRBV19*01 TRBJ2-7*01 32.0 1016.0 SALHAAR??cTGAQFCF_CASSPLLATQGYEQYF 1 4240 NP44-52 FLU 0.53 474 NP44-52 121 4119 7 InfluenzaA NP CTELKLSDY transitional T cells between effector and memory populations PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*01:01 B2M MHCI -9288 chip0423_515263 12.54 8.99 Chip2 T1D_5 T1D TGTGCCAGCAGTCCCCCGGGGCGCAATGAAAAACTGTTTTTT CASSPPGRNEKLFF TRAV9-2*01 TRAJ5*01 2.0 7.0 TGTGCCAGCAGTCCCCCGGGGAGAAATGAAAAACTGTTTTTT CASSPPGRNEKLFF TRBV12-3*01,TRBV12-4*01 TRBJ1-4*01 69.0 2629.0 CASSPPGRNEKLFF_CASSPPGRNEKLFF 11 3531 BZLF1-190-197 EBV 0.86 2156 NEG 142 3389 10 EBV BZLF1 RAKFKQLL effector memory T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-B*08:01 B2M MHCI -9289 chip0423_468059 11.83 10.91 Chip2 T1D_4 T1D TGCATCGTCAGAGAGGGGGGGGGTGCTGACGGGCTCCCCTTT CIVREGGGADGLPF TRAV26-1*01 TRAJ45*01 38.0 1623.0 TGTGCCAGCAGCTTAGCGGTCGGAGAAGGGCCCCAGCATTTT CASSLAVGEGPQHF TRBV7-9*01 TRBJ1-5*01 47.0 1206.0 CIVREGGGADGLPF_CASSLAVGEGPQHF 21 3517 BZLF1-190-197 EBV 1.0 2156 BZLF1-190-197 134 3383 9 EBV BZLF1 RAKFKQLL effector memory T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-B*08:01 B2M MHCI -9290 chip0423_46678 7.77 11.62 Chip2 T1D_4 T1D TGTGCTCTAAGGGAATGTATTCAGGAGGAGGTGCTGACGGACTCACCTTT CALRECIQg?aGGADGLTF TRAV16*01 TRAJ45*01 1.0 28.0 TGCAGTGCTACTAACCAGTACGACGGACCCGACACTGAAGCTTTCTTT CSATNQYDGPDTEAFF TRBV20-1*01 TRBJ1-1*01 1.0 48.0 CALRECIQg?aGGADGLTF_CSATNQYDGPDTEAFF 1 5794 BZLF1-190-197 EBV 0.62 2156 NEG 157 5637 7 EBV BZLF1 RAKFKQLL transitional T cells between effector and memory populations PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-B*08:01 B2M MHCI -9291 chip0423_824806 9.01 9.02 Chip2 T1D_5 T1D TGTGCCAGCAGCCATAGCTCCACCGGGGAGCTGTTTTTT CASSHSSTGELFF TRBV12-3*01,TRBV12-4*01 TRBJ2-2*01 1.0 10.0 _CASSHSSTGELFF 3 4897 BZLF1-190-197 EBV 0.71 2156 NEG 142 4755 8 EBV BZLF1 RAKFKQLL effector memory T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-B*08:01 B2M MHCI -9292 chip0423_401304 11.9 13.11 Chip2 T1D_4 T1D TGTGCTGTGAGTGATGGAGAAGGAGCCCAGAAGCTGGTATTT CAVSDGEGAQKLVF TRAV8-6*01 TRAJ54*01 38.0 2048.0 TGTGCCAGCAGCTTAACGGTTCTGGCAGGTCCAAACACTGAAGCTTTCTTT CASSLTVLAGPNTEAFF TRBV7-3*01 TRBJ1-1*01 19.0 710.0 CAVSDGEGAQKLVF_CASSLTVLAGPNTEAFF 44 1641 BZLF1-190-197 EBV 0.92 2156 NEG 120 1521 11 EBV BZLF1 RAKFKQLL effector T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-B*08:01 B2M MHCI -9293 chip0423_801404 12.89 7.64 Chip2 T1D_4 T1D TGTGCCAGCAGCCAAGTCAACAACCCGGGGGATGGCTACACCTTC CASSQVNNPGDGYTF TRBV14*01 TRBJ1-2*01 11.0 366.0 _CASSQVNNPGDGYTF 94 3432 EBNA3A-158-166 EBV 0.83 444 EBNA3A-158-166 145 3287 10 EBV EBNA3A QAKWRLQTL effector memory T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-B*08:01 B2M MHCI -9294 chip0423_643807 9.12 7.84 Chip2 T1D_4 T1D TGTGCCAGCAGCTGGGGCCCTGAAGCTTTCTTT CASSWGPEAFF TRAV36/DV7*01 TRAJ40*01 2.0 5.0 TGTGCCAGCAGCTGGGGCCCTGAAGCTTTCTTT CASSWGPEAFF TRBV7-9*01 TRBJ1-1*01 20.0 1332.0 CASSWGPEAFF_CASSWGPEAFF 1 4883 EBNA3A-193-201 EBV 1.0 1022 EBNA3A-193-201 156 4727 8 EBV EBNA3A FLRGRAYGL effector memory T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-B*08:01 B2M MHCI -9295 chip0423_620837 -3.9 9.36 Chip2 T1D_6 T1D TGTGCAATGAGCGGGATACTCACGGGAGGAGGAAACAAACTCACCTTT CAMSGILTGGGNKLTF TRAV12-3*01 TRAJ10*01 34.0 1376.0 CAMSGILTGGGNKLTF_ 1 5733 G6PC2-NLI-8 IGRP 0.93 32 NEG 118 5615 2 HomoSapiens G6PC2 NLIFKWIL Naive T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-B*08:01 B2M MHCI -9296 chip0423_115388 10.49 11.01 Chip2 T1D_4 T1D TGTGTGGTGAACCTCGACACCGACAAGCTCATCTTT CVVNLDTDKLIF TRAV12-1*01 TRAJ34*01 36.0 2784.0 TGCAGCGCGGGACAGGGTCCCTACGAGCAGTACTTC CSAGQGPYEQYF TRBV29-1*01 TRBJ2-7*01 49.0 4075.0 CVVNLDTDKLIF_CSAGQGPYEQYF 3 3186 BZLF1-190-197 EBV 1.0 2156 NEG 134 3052 9 EBV BZLF1 RAKFKQLL effector memory T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-B*08:01 B2M MHCI -9297 chip0423_285258 14.08 10.72 Chip2 T1D_5 T1D TGTGCAGCGGGGGAAACCTCCTACGACAAGGTGATATTT CAAGETSYDKVIF TRAV13-1*01 TRAJ50*01 29.0 1712.0 TGTGCCAGCAGCTTGTTAGGCAGTCAGAACACTGAAGCTTTCTTT CASSLLGSQNTEAFF TRBV7-9*01 TRBJ1-1*01 17.0 553.0 CAAGETSYDKVIF_CASSLLGSQNTEAFF 11 5788 BZLF1-190-197 EBV 0.71 2156 NEG 134 5654 12 EBV BZLF1 RAKFKQLL effector T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-B*08:01 B2M MHCI -9298 chip0423_5244 9.51 8.99 Chip2 healthy_4 healthy TGTGCCAGCAGTTGGACAGGGTCCTACGAGCAGTACTTC CASSWTGSYEQYF TRBV6-2*01,TRBV6-3*01 TRBJ2-7*01 20.0 1050.0 _CASSWTGSYEQYF 2 5178 EBV-BRLF1 EBV 0.8 1264 NEG 144 5034 8 EBV BRLF1 YVLDHLIVV effector memory T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*02:01 B2M MHCI -9299 chip0423_685053 5.47 11.21 Chip2 healthy_3 healthy TGTGCCGTGGACATGATGGACAGAGGCTCAACCCTGGGGCGGCTATACTTT CAVDMMDRGSTLGRLYF TRAV39*01 TRAJ18*01 84.0 2761.0 TGTGCCAGTAGTATATATTCTAGCACAGATACGCAGTATTTT CASSIYSSTDTQYF TRBV19*01 TRBJ2-3*01 42.0 1407.0 CAVDMMDRGSTLGRLYF_CASSIYSSTDTQYF 1 6148 M1 FLU 0.48 1250 NEG 142 6006 6 InfluenzaA M1 GILGFVFTL central memory T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*02:01 B2M MHCI -9300 chip0423_511895 -2.75 13.62 Chip2 T1D_6 T1D TGTGCAGGCGCTTGGCACTTCCACAAATTTTACTTT CAGAWHFHKFYF TRAV27*01 TRAJ21*01 61.0 4020.0 TGTGCCAGCAGCGTAGGGGGCCATGCCTACGAGCAGTACTTC CASSVGGHAYEQYF TRBV9*01 TRBJ2-7*01 44.0 2922.0 CAGAWHFHKFYF_CASSVGGHAYEQYF 1 3548 EBNA3A-193-201 EBV 0.44 1022 NEG 107 3441 1 EBV EBNA3A FLRGRAYGL Naive T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-B*08:01 B2M MHCI -9301 chip0423_471470 5.21 10.93 Chip2 healthy_3 healthy TGTGCCATGATGACAACTGACAGCTGGGGGAAATTGCAGTTT CAMMTTDSWGKLQF TRAV27*01 TRAJ24*01 1.0 33.0 TGTGCCAGCAGTGCAGCCGGGACGGAAAACATTCAGTACTTC CASSAAGTENIQYF TRBV28*01 TRBJ2-4*01 104.0 5499.0 CAMMTTDSWGKLQF_CASSAAGTENIQYF 1 5358 GAG-433-442 HIV 0.92 19 NEG 122 5236 6 HIV-1 GAG FLGKIWPSYK central memory T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*02:01 B2M MHCI -9302 chip0423_370457 -0.83 8.17 Chip2 T1D_6 T1D TGTGCTTATTACTGGGGGAACACCGTAACCAGTTCTATTTT CAYYWGaa?HRNQFYF TRAV38-1*01 TRAJ49*01 1.0 46.0 TGCGCCAGCAGCTTTAGCGGGGGGGCCTACGAGCAGTACTTC CASSFSGGAYEQYF TRBV5-1*01 TRBJ2-7*01 8.0 455.0 CAYYWGaa?HRNQFYF_CASSFSGGAYEQYF 1 5806 BZLF1-190-197 EBV 0.77 2156 BZLF1-190-197 146 5660 3 EBV BZLF1 RAKFKQLL Naive T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-B*08:01 B2M MHCI -9303 chip0423_76163 -2.42 9.17 Chip2 T1D_6 T1D TGCGCCAGCAGCCAAGGGGGAGACAGGCGGATCACCCCTCCACTTT CASSQGGga??caGGSPLHF TRBV4-1*01 TRBJ1-6*01 7.0 284.0 _CASSQGGga??caGGSPLHF 1 6585 PGT-178 PGT 0.6 1480 NEG 118 6467 3 HomoSapiens PGT LLAGIGTVPI Naive T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*02:01 B2M MHCI -9304 chip0423_860762 -0.39 8.41 Chip2 healthy_4 healthy TGTGCCCGCAGTACACTAACAGGGGGCACCGGGGAGCTGTTTTTT CARSTLTGGTGELFF TRBV6-1*01 TRBJ2-2*01 14.0 275.0 _CARSTLTGGTGELFF 1 6650 PGT-178 PGT 0.74 1480 PGT-178 133 6517 4 HomoSapiens PGT LLAGIGTVPI Naive T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*02:01 B2M MHCI -9305 chip0423_694903 6.29 11.57 Chip2 healthy_4 healthy TGTGCCAGCAGCCCCCTTGGGGACAGGGAAAATTCACCCCTCCACTTT CASSPLGDRENSPLHF TRBV7-9*01 TRBJ1-6*01 5.0 177.0 _CASSPLGDRENSPLHF 2 4092 BZLF1-190-197 EBV 0.67 2156 NEG 129 3963 7 EBV BZLF1 RAKFKQLL transitional T cells between effector and memory populations PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-B*08:01 B2M MHCI -9306 chip0423_663004 -1.42 10.16 Chip2 T1D_4 T1D TGTGCCGCCACCGGCACTGCCAGTAAACTCACCTTT CAATGTASKLTF TRAV12-2*01 TRAJ44*01 1.0 155.0 CAATGTASKLTF_ 1 5680 MART1-ALA MART1 0.58 269 NEG 121 5559 3 HomoSapiens MART1 ALAGIGILTV Naive T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*02:01 B2M MHCI -9307 chip0423_585788 6.43 14.16 Chip2 healthy_3 healthy TGTGCCAGCAGTGAAATGTGGGGAGCACCCCTCCACTTT CASSEMWGAPLHF TRBV2*01 TRBJ1-6*01 31.0 1563.0 _CASSEMWGAPLHF 14 4695 NP44-52 FLU 0.7 474 NP44-52 136 4559 7 InfluenzaA NP CTELKLSDY transitional T cells between effector and memory populations PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*01:01 B2M MHCI -9308 chip0423_94548 9.87 10.17 Chip2 healthy_4 healthy _ 6746 3992 BZLF1-190-197 EBV 1.0 2156 NEG 117 3875 9 EBV BZLF1 RAKFKQLL effector memory T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-B*08:01 B2M MHCI -9309 chip0423_620869 9.04 7.86 Chip2 T1D_5 T1D TGTGCAGCATTGGAAACCTCCTACGACAAGGTGATATTT CAALETSYDKVIF TRAV13-1*01 TRAJ50*01 35.0 3149.0 TGTGCCAGCAGCCCCCCGGGCCAGGGGAACATTCAGTACTTC CASSPPGQGNIQYF TRBV12-3*01,TRBV12-4*01 TRBJ2-4*01 116.0 6519.0 CAALETSYDKVIF_CASSPPGQGNIQYF 1 7119 BZLF1-190-197 EBV 0.43 2156 BZLF1-190-197 161 6958 8 EBV BZLF1 RAKFKQLL effector memory T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-B*08:01 B2M MHCI -9310 chip0423_572086 -3.21 9.38 Chip2 T1D_5 T1D TGTGCAGCTCCGCTGGTGGCAGGCAACAAGCTAACTTTT CAAPLVAGNKLTF TRAV13-1*01 TRAJ17*01 1.0 20.0 TGTGCCTGGAGCGGGAGCTCCTACGAGCAGTACTTC CAWSGSSYEQYF TRBV30*01 TRBJ2-7*01 6.0 329.0 CAAPLVAGNKLTF_CAWSGSSYEQYF 1 4550 GAD2-MMI-8 GAD65 0.67 40 NEG 131 4419 2 HomoSapiens GAD2 MMIARFKM Naive T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-B*08:01 B2M MHCI -9311 chip0423_167105 13.07 7.9 Chip2 T1D_4 T1D TGTGCTGTGAGAGACACGACGTGGGCTGACAAGATCATCTTT CAVRDTTWADKIIF TRAV3*01 TRAJ30*01 77.0 3540.0 TGTGCCAGCAGCTTAGGAGGGGGAGAGGGGGCCAGTGAGCAGTTCTTC CASSLGGGEGASEQFF TRBV7-6*01 TRBJ2-1*01 23.0 1101.0 CAVRDTTWADKIIF_CASSLGGGEGASEQFF 3 3311 EBNA3A-193-201 EBV 1.0 1022 NEG 133 3178 10 EBV EBNA3A FLRGRAYGL effector memory T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-B*08:01 B2M MHCI -9312 chip0423_10305 -2.7 8.43 Chip2 T1D_4 T1D TGTGCAATGAGCTTATCTAACTTTGGAAATGAGAAATTAACCTTT CAMSLSNFGNEKLTF TRAV12-3*01 TRAJ48*01 57.0 1959.0 TGTGCCAGCAGCTGGATCACAGGGGGCGGAAGCAATCAGCCCCAGCATTTT CASSWITGGGSNQPQHF TRBV11-2*01 TRBJ1-5*01 53.0 1354.0 CAMSLSNFGNEKLTF_CASSWITGGGSNQPQHF 1 5617 PGT-178 PGT 0.69 1480 NEG 143 5474 2 HomoSapiens PGT LLAGIGTVPI Naive T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*02:01 B2M MHCI -9313 chip0423_762426 -2.62 14.86 Chip2 T1D_6 T1D TGTGCAATGACCCTATCTAACTTTGGAAATGAGAAATTAACCTTT CAMTLSNFGNEKLTF TRAV12-3*01 TRAJ48*01 6.0 136.0 TGTGCCAGCAGCTTAGCTGGCGGGGGGGTCAATGAGCAGTTCTTC CASSLAGGGVNEQFF TRBV7-6*01 TRBJ2-1*01 9.0 525.0 CAMTLSNFGNEKLTF_CASSLAGGGVNEQFF 1 2100 PGT-178 PGT 0.56 1480 NEG 131 1969 1 HomoSapiens PGT LLAGIGTVPI Naive T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*02:01 B2M MHCI -9314 chip0423_660825 -1.48 8.23 Chip2 healthy_3 healthy TGTGCCAGTAGTATGGGGGGAACTTACGAGCAGTACTTC CASSMGGTYEQYF TRBV19*01 TRBJ2-7*01 12.0 587.0 _CASSMGGTYEQYF 1 6950 MART1-A28L MART1 0.41 84 NEG 113 6837 3 HomoSapiens MART1 ALGIGILTV Naive T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*02:01 B2M MHCI -9315 chip0423_832916 -3.0 12.96 Chip2 T1D_5 T1D TGTCCATACAATGACCTGCGCTTT CPYNDLRF TRAV17*01 TRAJ43*01 15.0 1831.0 CPYNDLRF_ 1 3717 GAD2-CLE-9 GAD65 0.64 4 GAD2-CLE-9 114 3603 1 HomoSapiens GAD2 CLELAEYLY Naive T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*01:01 B2M MHCI -9316 chip0423_655463 13.33 10.89 Chip2 T1D_5 T1D TGTGCAGCGGCGGAAACCTCCTACGACAAGGTGATATTT CAAAETSYDKVIF TRAV13-1*01 TRAJ50*01 41.0 3428.0 TGTGCCAGCCAACTAGCGGGAGGCACCGGGGAGCTGTTTTTT CASQLAGGTGELFF TRBV24-1*01 TRBJ2-2*01 23.0 1174.0 CAAAETSYDKVIF_CASQLAGGTGELFF 131 2584 BZLF1-190-197 EBV 0.43 2156 NEG 135 2449 9 EBV BZLF1 RAKFKQLL effector memory T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-B*08:01 B2M MHCI -9317 chip0423_616390 11.19 10.8 Chip2 T1D_4 T1D TGCATCGTCAGAGAGGGCGGAGGTGCTGACGGACTCACCTTT CIVREGGGADGLTF TRAV26-1*01 TRAJ45*01 1.0 51.0 TGTGCCAGCAGCTTAGCGGTCGGAGAAGGGCCCCAGCATTTT CASSLAVGEGPQHF TRBV7-9*01 TRBJ1-5*01 46.0 1597.0 CIVREGGGADGLTF_CASSLAVGEGPQHF 68 4052 BZLF1-190-197 EBV 0.95 2156 BZLF1-190-197 142 3910 9 EBV BZLF1 RAKFKQLL effector memory T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-B*08:01 B2M MHCI -9318 chip0423_176162 15.38 10.84 Chip2 T1D_5 T1D TGTGCAGCGGCGGAAACCTCCTACGACAAGGTGATATTT CAAAETSYDKVIF TRAV13-1*01 TRAJ50*01 45.0 4075.0 CAAAETSYDKVIF_ 32 2774 BZLF1-190-197 EBV 0.6 2156 NEG 138 2636 12 EBV BZLF1 RAKFKQLL effector T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-B*08:01 B2M MHCI -9319 chip0423_567942 8.59 11.61 Chip2 healthy_3 healthy TGCGCCAGCAGCCAAGAGGGACAGGGTGCCGGGGAGCTGTTTTTT CASSQEGQGAGELFF TRBV4-1*01 TRBJ2-2*01 1.0 99.0 _CASSQEGQGAGELFF 2 4717 NP44-52 FLU 0.96 474 NP44-52 121 4596 7 InfluenzaA NP CTELKLSDY transitional T cells between effector and memory populations PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*01:01 B2M MHCI -9320 chip0423_194779 -3.89 12.06 Chip2 T1D_6 T1D TGTGCCAGCAGCTTCCTGACAGGGGCACAGTCCTACGAGCAGTACTTC CASSFLTGAQSYEQYF TRBV5-6*01 TRBJ2-7*01 132.0 5413.0 _CASSFLTGAQSYEQYF 1 4594 IAPP-STN-9 IAPP 0.46 48 NEG 122 4472 1 HomoSapiens IAPP STNVGSNTY Naive T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*01:01 B2M MHCI -9321 chip0423_846039 7.39 12.53 Chip2 healthy_3 healthy _ 6746 3984 M1 FLU 0.67 1250 M1 108 3876 7 InfluenzaA M1 GILGFVFTL transitional T cells between effector and memory populations PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*02:01 B2M MHCI -9322 chip0423_151576 5.15 12.21 Chip2 healthy_4 healthy _ 6746 4600 M1 FLU 1.0 1250 NEG 128 4472 6 InfluenzaA M1 GILGFVFTL central memory T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*02:01 B2M MHCI -9323 chip0423_198535 12.35 8.45 Chip2 T1D_4 T1D _ 6746 2481 BZLF1-190-197 EBV 0.64 2156 NEG 124 2357 10 EBV BZLF1 RAKFKQLL effector memory T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-B*08:01 B2M MHCI -9324 chip0423_85671 -1.64 7.24 Chip2 healthy_3 healthy TGTGCAGCCCCAAAGGCAGGCAACATGCTCACCTTT CAAPKAGNMLTF TRAV13-1*01 TRAJ39*01 14.0 1135.0 TGTGCCAGCGCCCGGGATGTCAGCTACGAGCAGTACTTC CASARDVSYEQYF TRBV25-1*01 TRBJ2-7*01 30.0 2050.0 CAAPKAGNMLTF_CASARDVSYEQYF 1 7469 ZNT8-115-123 ZNT8 0.92 74 ZNT8-115-123 136 7333 3 HomoSapiens ZNT8 LLSLFSLWL Naive T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*02:01 B2M MHCI -9325 chip0423_750292 5.2 12.04 Chip2 healthy_3 healthy TGTGCTCTGAGTTCTTATTCTGGGGGTTACCAGAAAGTTACCTTT CALSSYSGGYQKVTF TRAV19*01 TRAJ13*01 24.0 1122.0 TGCAGTGCCGCTTCCTACCGGGACATTGATAACTATGGCTACACCTTC CSAASYRDIDNYGYTF TRBV20-1*01 TRBJ1-2*01 27.0 1113.0 CALSSYSGGYQKVTF_CSAASYRDIDNYGYTF 1 5486 NP44-52 FLU 0.63 474 NP44-52 127 5359 6 InfluenzaA NP CTELKLSDY central memory T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*01:01 B2M MHCI -9326 chip0423_588866 7.32 11.45 Chip2 healthy_3 healthy TGTGCTCGTCGCGGTTCTGGTTCTGCCCGGCCCCTGACCTTT CARRGSGSARPLTF TRAV36/DV7*01 TRAJ22*01 35.0 1994.0 CARRGSGSARPLTF_ 1 8858 NP44-52 FLU 0.8 474 NP44-52 133 8725 7 InfluenzaA NP CTELKLSDY transitional T cells between effector and memory populations PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*01:01 B2M MHCI -9327 chip0423_540820 -0.89 9.08 Chip2 healthy_4 healthy _ 6746 6457 PGT-178 PGT 0.62 1480 NEG 115 6342 3 HomoSapiens PGT LLAGIGTVPI Naive T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*02:01 B2M MHCI -9328 chip0423_511457 5.55 11.67 Chip2 healthy_3 healthy TGCGCTGACACGAATTCTGGGGGTTACCAGAAAGTTACCTTT CADTNSGGYQKVTF TRAV1-1*01 TRAJ13*01 33.0 2345.0 CADTNSGGYQKVTF_ 2 8214 NP44-52 FLU 0.87 474 NP44-52 124 8090 6 InfluenzaA NP CTELKLSDY central memory T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*01:01 B2M MHCI -9329 chip0423_209494 -3.78 8.47 Chip2 T1D_6 T1D TGTGCCGTGGCGGGACAACTCACCTTT CAVAGQLTF TRAV12-2*01 TRAJ22*01 5.0 274.0 TGCGCCAGCAGTCCGGGCCCACTAACTAATGAAAAACTGTTTTTT CASSPGPLTNEKLFF TRBV10-2*01 TRBJ1-4*01 33.0 1047.0 CAVAGQLTF_CASSPGPLTNEKLFF 1 6907 PGT-178 PGT 0.46 1480 PGT-178 135 6772 2 HomoSapiens PGT LLAGIGTVPI Naive T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*02:01 B2M MHCI -9330 chip0423_819597 13.0 7.1 Chip2 T1D_5 T1D TGTGCAGCTCTCGAAACCTCCTACGACAAGGTGATATTT CAALETSYDKVIF TRAV13-1*01 TRAJ50*01 6.0 549.0 TGTGCCAGCAGTCCCGACGGATCCACCGGGGAGCTGTTTTTT CASSPDGSTGELFF TRBV12-3*01,TRBV12-4*01 TRBJ2-2*01 209.0 10955.0 CAALETSYDKVIF_CASSPDGSTGELFF 14 3768 BZLF1-190-197 EBV 0.6 2156 BZLF1-190-197 142 3626 10 EBV BZLF1 RAKFKQLL effector memory T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-B*08:01 B2M MHCI -9331 chip0423_567899 11.24 9.71 Chip2 T1D_5 T1D TGTGCCAGCAGCCCTCTTGGGAGCAATGAAAAACTGTTTTTT CASSPLGSNEKLFF TRBV7-9*01 TRBJ1-4*01 20.0 850.0 _CASSPLGSNEKLFF 20 5009 BZLF1-190-197 EBV 0.73 2156 NEG 125 4884 9 EBV BZLF1 RAKFKQLL effector memory T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-B*08:01 B2M MHCI -9332 chip0423_353920 6.8 12.21 Chip2 T1D_4 T1D TGTGCACGCGTCAATTCTGGACGACGCCATGGGAATCTCATCTTT CARVNSGRRHGNLIF TRAV19*01 TRAJ42*01 13.0 646.0 TGTGCCGTCTGGAGGGACGGAGCCTACGAGCAGTACTTC CAVWRDGAYEQYF TRBV28*01 TRBJ2-7*01 27.0 1703.0 CARVNSGRRHGNLIF_CAVWRDGAYEQYF 1 5642 EBV-LMP1-1 EBV 0.6 237 NEG 120 5522 7 EBV LMP1 YLLEMLWRL transitional T cells between effector and memory populations PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*02:01 B2M MHCI -9333 chip0423_2596 -1.93 11.15 Chip2 T1D_5 T1D TGTGCCAGCAGGGACCCCGGGGGAGGCTACACCTTC CASRDPGGGYTF TRBV28*01 TRBJ1-2*01 14.0 1093.0 _CASRDPGGGYTF 1 5455 PTPRN-HAR-8 PTPRN 0.8 13 PTPRN-HAR-8 150 5305 3 HomoSapiens PTPRN HARIKLKV Naive T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-B*08:01 B2M MHCI -9334 chip0423_568200 5.88 13.47 Chip2 T1D_6 T1D TGTGCCAGTAGTCCCAGGGCCGCAGATACGCAGTATTTT CASSPRAADTQYF TRBV19*01 TRBJ2-3*01 15.0 745.0 _CASSPRAADTQYF 2 6518 M1 FLU 0.41 1250 M1 132 6386 7 InfluenzaA M1 GILGFVFTL transitional T cells between effector and memory populations PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*02:01 B2M MHCI -9335 chip0423_210109 16.07 11.71 Chip2 healthy_3 healthy _ 6746 3024 NP44-52 FLU 0.51 474 NP44-52 115 2909 12 InfluenzaA NP CTELKLSDY effector T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*01:01 B2M MHCI -9336 chip0423_554654 6.96 10.21 Chip2 healthy_3 healthy _ 6746 9684 NP44-52 FLU 0.85 474 NP44-52 120 9564 7 InfluenzaA NP CTELKLSDY transitional T cells between effector and memory populations PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*01:01 B2M MHCI -9337 chip0423_410916 7.42 11.64 Chip2 healthy_3 healthy TGTGCCTTAGCGAATTATGGAGGAAGCCAAGGAAATCTCATCTTT CALANYGGSQGNLIF TRAV24*01 TRAJ42*01 81.0 2495.0 TGTGCCAGCAGCGAGGAGGACGGGCCCCAGCATTTT CASSEEDGPQHF TRBV9*01 TRBJ1-5*01 45.0 2100.0 CALANYGGSQGNLIF_CASSEEDGPQHF 1 6639 NP44-52 FLU 0.67 474 NP44-52 135 6504 7 InfluenzaA NP CTELKLSDY transitional T cells between effector and memory populations PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*01:01 B2M MHCI -9338 chip0423_658343 7.29 12.41 Chip2 healthy_3 healthy TGTGCCAGCTGCCGGGACGGGACCTACGAGCAGTACTTC CASCRDGTYEQYF TRBV10-3*01 TRBJ2-7*01 51.0 2905.0 _CASCRDGTYEQYF 5 5462 NP44-52 FLU 0.62 474 NP44-52 129 5333 7 InfluenzaA NP CTELKLSDY transitional T cells between effector and memory populations PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*01:01 B2M MHCI -9339 chip0423_621564 -1.82 7.19 Chip2 healthy_3 healthy TGTGCCAGCAGTGACCCCCGGACGGGGGTTCAGCCCCAGCGTTGT CASSDPRTGVQPQRC TRBV6-1*01 TRBJ1-5*01 7.0 390.0 _CASSDPRTGVQPQRC 1 6429 PGT-178 PGT 0.57 1480 PGT-178 118 6311 3 HomoSapiens PGT LLAGIGTVPI Naive T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*02:01 B2M MHCI -9340 chip0423_872729 15.2 11.98 Chip2 T1D_5 T1D TGTGCCAGCAGTCCCCCGGGGAGAAATGAAAAACTGTTTTTT CASSPPGRNEKLFF TRBV12-3*01,TRBV12-4*01 TRBJ1-4*01 49.0 2133.0 _CASSPPGRNEKLFF 11 3822 BZLF1-190-197 EBV 0.71 2156 NEG 111 3711 12 EBV BZLF1 RAKFKQLL effector T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-B*08:01 B2M MHCI -9341 chip0423_786272 -1.14 9.95 Chip2 healthy_3 healthy TGTGCAATGAGCATCTCTAACTTTGGAAATGAGAAATTAACCTTT CAMSISNFGNEKLTF TRAV12-3*01 TRAJ48*01 40.0 1709.0 TGCGCCAGCAGAGGGAGTGGGACAGATATGAACACTGAAGCTTTCTTT CASRGSGTDMNTEAFF TRBV5-1*01 TRBJ1-1*01 39.0 1446.0 CAMSISNFGNEKLTF_CASRGSGTDMNTEAFF 1 5451 PGT-178 PGT 0.75 1480 PGT-178 108 5343 3 HomoSapiens PGT LLAGIGTVPI Naive T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*02:01 B2M MHCI -9342 chip0423_653395 6.14 11.68 Chip2 healthy_5 healthy TTTGCTGTTGGATAGCTTTGGAAATGAGATCTTAACCTTT FAVG*Ltg??gaNEILTF TRAV41*01 TRAJ48*01 32.0 1990.0 TGTGCCAGCAGTTTTCAGGGCGGGAATGAAAAACTGTTTTTT CASSFQGGNEKLFF TRBV12-3*01,TRBV12-4*01 TRBJ1-4*01 4.0 120.0 FAVG*Ltg??gaNEILTF_CASSFQGGNEKLFF 1 5275 BZLF1-190-197 EBV 0.78 2156 NEG 117 5158 7 EBV BZLF1 RAKFKQLL transitional T cells between effector and memory populations PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-B*08:01 B2M MHCI -9343 chip0423_432080 8.83 9.02 Chip2 healthy_4 healthy TGTGCCAGCAGTTTAATAGCGGGGGTGTACTACAATGAGCAGTTCTTC CASSLIAGVYYNEQFF TRBV27*01 TRBJ2-1*01 4.0 209.0 _CASSLIAGVYYNEQFF 1 4348 EBNA3A-158-166 EBV 0.6 444 NEG 136 4212 8 EBV EBNA3A QAKWRLQTL effector memory T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-B*08:01 B2M MHCI -9344 chip0423_298085 12.94 7.53 Chip2 T1D_4 T1D TGTGCCAGCAGCGTAGTACCCGGGGAGAACGAAAAACTGTTTTTT CASSVVPGENEKLFF TRBV9*01 TRBJ1-4*01 54.0 1896.0 _CASSVVPGENEKLFF 1 4016 BZLF1-190-197 EBV 0.73 2156 BZLF1-190-197 128 3888 10 EBV BZLF1 RAKFKQLL effector memory T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-B*08:01 B2M MHCI -9345 chip0423_288781 12.66 6.8 Chip2 T1D_4 T1D CTGTGCCAGCAGCCAAGTCAACAACCCGGGGGATGGCTACACCTTC LCQQPSQca??acPGDGYTF TRBV14*01 TRBJ1-2*01 3.0 37.0 _LCQQPSQca??acPGDGYTF 2 4379 EBNA3A-158-166 EBV 0.41 444 NEG 156 4223 10 EBV EBNA3A QAKWRLQTL effector memory T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-B*08:01 B2M MHCI -9346 chip0423_200881 11.36 8.49 Chip2 healthy_3 healthy TGTGCCGGCGGTTCCGCCCTCGCCGCGCAGTACTTC CAGGSALAAQYF TRBV6-5*01 TRBJ2-7*01 4.0 39.0 _CAGGSALAAQYF 1 5450 EBV-LMP2-FLY EBV 0.67 355 NEG 110 5340 10 EBV LMP2 FLYALALLL effector memory T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*02:01 B2M MHCI -9347 chip0423_545332 8.57 10.32 Chip2 T1D_5 T1D TGTGCAGAGATGGAAACCTCCTACGACAAGGTGATATTT CAEMETSYDKVIF TRAV13-2*01 TRAJ50*01 23.0 1742.0 TGTGCCAGCAGCTCCTTAAGCGGGGGGGCAGGAAATGAGCAGTTCTTC CASSSLSGGAGNEQFF TRBV7-9*01 TRBJ2-1*01 37.0 1646.0 CAEMETSYDKVIF_CASSSLSGGAGNEQFF 27 6406 BZLF1-190-197 EBV 0.54 2156 NEG 147 6259 8 EBV BZLF1 RAKFKQLL effector memory T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-B*08:01 B2M MHCI -9348 chip0423_113335 -2.97 7.84 Chip2 T1D_6 T1D TGTGCTCTGAGTGATAGAAGTGCTGGTGGTACTAGCTATGGAAAGCTGACATTT CALSDRSAGGTSYGKLTF TRAV9-2*01 TRAJ52*01 21.0 403.0 TGTGCCAGCAGTTTAAGAGTGGAAGAGACCCAGTACTTC CASSLRVEETQYF TRBV28*01 TRBJ2-5*01 53.0 2920.0 CALSDRSAGGTSYGKLTF_CASSLRVEETQYF 1 7543 GFAP-LRL-8 GFAP 0.58 18 GFAP-LRL-8 113 7430 2 HomoSapiens GFAP LRLRLDQL Naive T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-B*08:01 B2M MHCI -9349 chip0423_22532 10.94 8.52 Chip2 healthy_4 healthy TAGGCTGGAGCCCGTTGGCCTAATAATGAAGGCAACATGCTCACCTTT *AGARWPNNEGNMLTF TRAV27*01 TRAJ39*01 4.0 36.0 TGCGCCCGCGGATCGGGTGTTCCAAGAGACCCAGTACTTC CARGSGgt??tcQETQYF TRBV4-3*01 TRBJ2-5*01 52.0 3600.0 *AGARWPNNEGNMLTF_CARGSGgt??tcQETQYF 1 3932 EBV-LMP1-1 EBV 0.64 237 NEG 132 3800 10 EBV LMP1 YLLEMLWRL effector memory T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*02:01 B2M MHCI -9350 chip0423_453678 7.63 12.82 Chip2 healthy_3 healthy GGGGCTCTGATGTTTTTCGGGGGGCTTCTTTCAGCTGTTTTTT GALMFFG??gGFFQLFF TRAV19*01 TRAJ4*01 18.0 1907.0 TGTGCCGGCCGTGCGCTGTGGGGAGCACCCCTCCACTTT CAGRALWGAPLHF TRBV2*01 TRBJ1-6*01 3.0 458.0 GALMFFG??gGFFQLFF_CAGRALWGAPLHF 1 4423 NP44-52 FLU 0.68 474 NP44-52 120 4303 7 InfluenzaA NP CTELKLSDY transitional T cells between effector and memory populations PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*01:01 B2M MHCI -9351 chip0423_882066 13.4 7.4 Chip2 T1D_6 T1D TGCATCCTCCCGCTTGCTGGTGGTCCTAGCTATGGAAAGCTGACATTT CILPLAGGPSYGKLTF TRAV26-2*01 TRAJ52*01 16.0 755.0 TGTGCCAGCAGCTTGGGACAGGCCTACGAGCAGTACTTC CASSLGQAYEQYF TRBV7-8*01 TRBJ2-7*01 9.0 542.0 CILPLAGGPSYGKLTF_CASSLGQAYEQYF 1 3155 EBNA3A-193-201 EBV 0.55 1022 NEG 185 2970 10 EBV EBNA3A FLRGRAYGL effector memory T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-B*08:01 B2M MHCI -9352 chip0423_218164 6.62 11.43 Chip2 healthy_3 healthy _ 6746 6875 NP44-52 FLU 0.88 474 NP44-52 110 6765 7 InfluenzaA NP CTELKLSDY transitional T cells between effector and memory populations PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*01:01 B2M MHCI -9353 chip0423_173267 -0.77 10.27 Chip2 T1D_4 T1D TGTGCCGTGAACGATTTTATGAACACAGGCTTTCAGAAACTTGTAATT CAVNDFMNTGFQKLVI TRAV12-2*01 TRAJ8*01 1.0 54.0 TGTGCCAGCGGACCAACAGGGGTTCAGCCCCAGCATTTT CASGPTGVQPQHF TRBV28*01 TRBJ1-5*01 52.0 2477.0 CAVNDFMNTGFQKLVI_CASGPTGVQPQHF 1 6730 MART1-ALA MART1 0.4 269 NEG 133 6597 3 HomoSapiens MART1 ALAGIGILTV Naive T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*02:01 B2M MHCI -9354 chip0423_685540 -2.27 9.01 Chip2 T1D_5 T1D TGTGCCATCAGTGAGATAGGTCACAATCAGCCCCAGCATTTT CAISEIGHNQPQHF TRBV10-3*01 TRBJ1-5*01 40.0 1263.0 _CAISEIGHNQPQHF 1 7494 IAPP-ILK-8 IAPP 0.57 20 NEG 113 7381 3 HomoSapiens IAPP ILKLQVFL Naive T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-B*08:01 B2M MHCI -9355 chip0423_568782 13.34 8.41 Chip2 T1D_4 T1D TGTGCCAGCAGCTTAGCGGTCGGAGAAGGGCCCCAGCATTTT CASSLAVGEGPQHF TRBV7-9*01 TRBJ1-5*01 26.0 991.0 _CASSLAVGEGPQHF 113 3092 BZLF1-190-197 EBV 0.71 2156 BZLF1-190-197 146 2946 10 EBV BZLF1 RAKFKQLL effector memory T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-B*08:01 B2M MHCI -9356 chip0423_873752 11.25 11.2 Chip2 T1D_4 T1D TGTGCCAGCAGCAGAATCCCGGGACCGGGGGCCCGACCGGATCCGAACACCGGGGAGCTGTTTTTT CASSRIPGPGARPDPNTGELFF TRBV28*01 TRBJ2-2*01 1.0 12.0 _CASSRIPGPGARPDPNTGELFF 1 2687 EBV-LMP2A EBV 0.73 700 NEG 140 2547 9 EBV LMP2A CLGGLLTMV effector memory T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*02:01 B2M MHCI -9357 chip0423_401760 12.21 8.77 Chip2 healthy_4 healthy TGCATCCTTCCCCTAGCTGGTGGTACTAGCTATGGAAAGCTGACATTT CILPLAGGTSYGKLTF TRAV26-2*01 TRAJ52*01 15.0 583.0 TGTGCCAGCAGCTCCGGACAGGCCTACGAGCAGTACTTC CASSSGQAYEQYF TRBV7-8*01 TRBJ2-7*01 4.0 457.0 CILPLAGGTSYGKLTF_CASSSGQAYEQYF 40 2569 EBNA3A-193-201 EBV 0.86 1022 NEG 151 2418 10 EBV EBNA3A FLRGRAYGL effector memory T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-B*08:01 B2M MHCI -9358 chip0423_780627 -3.48 10.95 Chip2 T1D_6 T1D TGTGCCAGCAGTTACTGGGGACCCACAGATACGCAGTATTTT CASSYWGPTDTQYF TRBV6-5*01 TRBJ2-3*01 32.0 1844.0 _CASSYWGPTDTQYF 1 5040 G6PC2-LTS-10 IGRP 0.87 59 G6PC2-LTS-10 120 4920 4 HomoSapiens G6PC2 LTSLTILQLY Naive T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*01:01 B2M MHCI -9359 chip0423_707082 5.29 10.76 Chip2 T1D_4 T1D TGTGCCAGCAGCCTCCAGGGCGGGAACATTCAGTACTTC CASSLQGGNIQYF TRBV6-1*01 TRBJ2-4*01 46.0 1908.0 _CASSLQGGNIQYF 2 7261 EBV-LMP2-FLY EBV 1.0 355 NEG 131 7130 6 EBV LMP2 FLYALALLL central memory T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*02:01 B2M MHCI -9360 chip0423_352225 -3.67 9.74 Chip2 T1D_4 T1D TGTGCCGTGACAGGCTTTCAGAAACTTGTATTT CAVTGFQKLVF TRAV12-2*01 TRAJ8*01 11.0 750.0 TGTGCCAGCAGCCAAGTCAACAACCCGGGGGATGGCTACACCTTC CASSQVNNPGDGYTF TRBV14*01 TRBJ1-2*01 1.0 13.0 CAVTGFQKLVF_CASSQVNNPGDGYTF 1 5997 PGT-178 PGT 0.76 1480 NEG 101 5896 2 HomoSapiens PGT LLAGIGTVPI Naive T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*02:01 B2M MHCI -9361 chip0423_486576 -4.23 10.76 Chip2 T1D_4 T1D TGTGCCTGGAGGTACGACGGTGAAGCTTTCTTT CAWRYDGEAFF TRBV30*01 TRBJ1-1*01 9.0 332.0 _CAWRYDGEAFF 1 5312 NP380-388 FLU 0.44 60 NEG 116 5196 2 InfluenzaA NP ELRSRYWAI Naive T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-B*08:01 B2M MHCI -9362 chip0423_223358 0.49 8.6 Chip2 healthy_3 healthy TGTGCAGAGAAGCGGACCGGGACAGGCAGGAGAGCACTTACTTTT CAEKRTGTGRRALTF TRAV13-2*01 TRAJ5*01 20.0 834.0 TGTGCCAGCAGTCCACCGACAGGGTCGGGAGAGCAGTACTTC CASSPPTGSGEQYF TRBV27*01 TRBJ2-7*01 21.0 1242.0 CAEKRTGTGRRALTF_CASSPPTGSGEQYF 1 7716 PGT-178 PGT 0.51 1480 PGT-178 138 7578 4 HomoSapiens PGT LLAGIGTVPI Naive T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*02:01 B2M MHCI -9363 chip0423_183913 0.0 7.18 Chip2 healthy_3 healthy TGTGCCTTTGAGGTGGATAGCAACTATCAGTTAATCTGG CAFEVDSNYQLIW TRAV24*01 TRAJ33*01 30.0 2064.0 TGTGCCGTGACCGGCACTGCCAGTAAACTCACCTTT CAVTGTASKLTF TRAV12-2*01 TRAJ44*01 29.0 2119.0 0.4 TGTGCCAGCGCGCCCGCGTTGTTTGTGGGACCCTACGAGCAGTACTTC CASAPALFVGPYEQYF TRBV28*01 TRBJ2-7*01 4.0 184.0 CAFEVDSNYQLIW_CASAPALFVGPYEQYF 1 8271 MART1-ALA MART1 0.55 269 MART1-ALA 121 8150 3 HomoSapiens MART1 ALAGIGILTV Naive T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*02:01 B2M MHCI -9364 chip0423_870116 15.12 11.72 Chip2 T1D_5 T1D TGTGCCAGCAGTCCCCCGGGGAGAAATGAAAAACTGTTTTTT CASSPPGRNEKLFF TRBV12-3*01,TRBV12-4*01 TRBJ1-4*01 60.0 2342.0 _CASSPPGRNEKLFF 11 1941 BZLF1-190-197 EBV 0.56 2156 NEG 123 1818 12 EBV BZLF1 RAKFKQLL effector T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-B*08:01 B2M MHCI -9365 chip0423_747658 4.88 11.76 Chip2 healthy_4 healthy TGTGCCAGCAGCGTAGGTTGGACAGGGACAGGCGAGACCCAGTACTTC CASSVGWTGTGETQYF TRBV9*01 TRBJ2-5*01 24.0 1433.0 _CASSVGWTGTGETQYF 4 3335 M1 FLU 1.0 1250 NEG 121 3214 6 InfluenzaA M1 GILGFVFTL central memory T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*02:01 B2M MHCI -9366 chip0423_533962 10.41 10.47 Chip2 healthy_3 healthy TGTGCCGTGAAGGACACCGACAAGCTCATCTTT CAVKDTDKLIF TRAV8-1*01 TRAJ34*01 1.0 50.0 TGTGCCAGCAGTTTGTACAGTGCCGAGCAGCACTTC CASSLYSAEQHF TRBV28*01 TRBJ2-7*01 33.0 3511.0 CAVKDTDKLIF_CASSLYSAEQHF 1 5808 EBV-BRLF1 EBV 0.77 1264 EBV-BRLF1 132 5676 9 EBV BRLF1 YVLDHLIVV effector memory T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*02:01 B2M MHCI -9367 chip0423_471795 -2.73 13.15 Chip2 T1D_4 T1D TGTGCAATGAGCTTATCTAACTTTGGAAATGAGAAATTAACCTTT CAMSLSNFGNEKLTF TRAV12-3*01 TRAJ48*01 35.0 1420.0 TGTGCCTGGAGTGAGGTCCCTGAAGCTTTCTTT CAWSEVPEAFF TRBV30*01 TRBJ1-1*01 7.0 483.0 CAMSLSNFGNEKLTF_CAWSEVPEAFF 1 4505 PGT-178 PGT 0.8 1480 PGT-178 147 4358 1 HomoSapiens PGT LLAGIGTVPI Naive T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*02:01 B2M MHCI -9368 chip0423_375407 14.95 9.18 Chip2 T1D_6 T1D TGCATCCTCCCACTTGCTGGTGGTACTAGCTACGGAAAGCTGACATTT CILPLAGGTSYGKLTF TRAV26-2*01 TRAJ52*01 24.0 1104.0 TGTGCCAGCAGCTTGGGACAGGCCTACGAGCAGTACTTC CASSLGQAYEQYF TRBV7-8*01 TRBJ2-7*01 13.0 750.0 CILPLAGGTSYGKLTF_CASSLGQAYEQYF 308 4989 EBNA3A-193-201 EBV 0.68 1022 NEG 128 4861 12 EBV EBNA3A FLRGRAYGL effector T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-B*08:01 B2M MHCI -9369 chip0423_118521 10.72 8.83 Chip2 T1D_5 T1D TGTGCCAGCAGCTCCCTCGGGACAGGGTCACAGGCTTTCTTT CASSSLGTGSQAFF TRAV36/DV7*01 TRAJ40*01 2.0 17.0 TGTGCCAGCAGCTCCCTCGGGACAGGGTCACAGGCTTTCTTT CASSSLGTGSQAFF TRBV7-9*01 TRBJ1-1*01 40.0 2113.0 CASSSLGTGSQAFF_CASSSLGTGSQAFF 1 4571 BZLF1-190-197 EBV 0.75 2156 NEG 133 4438 10 EBV BZLF1 RAKFKQLL effector memory T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-B*08:01 B2M MHCI -9370 chip0423_369194 -1.06 8.43 Chip2 healthy_4 healthy TGTGTGGTGAGTCCCTCTAACTTTGGAAATGAGAAATTAACCTTC CVVSPSNFGNEKLTF TRAV12-1*01 TRAJ48*01 48.0 1676.0 CVVSPSNFGNEKLTF_ 1 5575 PGT-178 PGT 1.0 1480 NEG 121 5454 4 HomoSapiens PGT LLAGIGTVPI Naive T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*02:01 B2M MHCI -9371 chip0423_748604 15.88 10.16 Chip2 healthy_3 healthy _ 6746 4730 M1 FLU 0.49 1250 M1 128 4602 12 InfluenzaA M1 GILGFVFTL effector T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*02:01 B2M MHCI -9372 chip0423_392791 -2.24 11.5 Chip2 healthy_4 healthy TGTGCCAGCAGTGAATCAGGGACTACAGAGACCCAGTACTTC CASSESGTTETQYF TRBV25-1*01 TRBJ2-5*01 29.0 975.0 _CASSESGTTETQYF 1 3931 PGT-178 PGT 0.89 1480 PGT-178 139 3792 4 HomoSapiens PGT LLAGIGTVPI Naive T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*02:01 B2M MHCI -9373 chip0423_856397 15.98 12.06 Chip2 healthy_3 healthy TGTGCCAGCTGCCGGGACGGGACCTACGAGCAGTACTTC CASCRDGTYEQYF TRBV10-3*01 TRBJ2-7*01 12.0 732.0 _CASCRDGTYEQYF 5 2285 NP44-52 FLU 0.71 474 NP44-52 132 2153 12 InfluenzaA NP CTELKLSDY effector T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*01:01 B2M MHCI -9374 chip0423_582380 5.87 13.74 Chip2 healthy_3 healthy TGCGCCAGCAGCCAAGAGGGACAGGGTGCCGGGGAGCTGTTTTTT CASSQEGQGAGELFF TRBV4-1*01 TRBJ2-2*01 38.0 1989.0 _CASSQEGQGAGELFF 2 6518 NP44-52 FLU 0.86 474 NP44-52 127 6391 7 InfluenzaA NP CTELKLSDY transitional T cells between effector and memory populations PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*01:01 B2M MHCI -9375 chip0423_423103 11.0 8.29 Chip2 T1D_4 T1D _ 6746 3638 EBNA3A-193-201 EBV 0.64 1022 NEG 131 3507 10 EBV EBNA3A FLRGRAYGL effector memory T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-B*08:01 B2M MHCI -9376 chip0423_380748 8.5 11.51 Chip2 T1D_6 T1D TGCGCCAGCAGTGACATTAGGGAGGGGCAGGGTGAAGCTTTCTTT CASSDIREGQGEAFF TRBV10-2*01 TRBJ1-1*01 11.0 406.0 _CASSDIREGQGEAFF 37 5498 EBNA3A-158-166 EBV 1.0 444 NEG 138 5360 7 EBV EBNA3A QAKWRLQTL transitional T cells between effector and memory populations PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-B*08:01 B2M MHCI -9377 chip0423_278476 -2.25 7.62 Chip2 healthy_4 healthy TGTGCCGTGGACATCCCCGATTCGGGGGGGGGTGCTGTCGGTCTCACCTTT CAVDIPDSGGGAVGLTF TRAV39*01 TRAJ45*01 12.0 551.0 TGTGCCAGCTCACCACTAGGGACACCGAACACTGAAGCTTTCTTT CASSPLGTPNTEAFF TRBV18*01 TRBJ1-1*01 12.0 379.0 CAVDIPDSGGGAVGLTF_CASSPLGTPNTEAFF 1 6255 PREINS-6-14 INS 0.8 20 NEG 107 6148 2 HomoSapiens PREINS RLLPLLALL Naive T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*02:01 B2M MHCI -9378 chip0423_239282 -0.74 6.99 Chip2 T1D_6 T1D TGTGCAGATCCGCAGGCAGGAACTGCTCTGATCTTT CADPQAGTALIF TRAV5*01 TRAJ15*01 6.0 711.0 TGCGCTGCGAGAGGGACACGGGAGGAGGAAACAAACTCACCTTT CAARGTRg?aGGNKLTF TRAV1-1*01 TRAJ10*01 8.0 301.0 0.42 TGCGCCAGCAGCCAGTTTTCGGGAGGCAATGAGCAGTTCTTC CASSQFSGGNEQFF TRBV4-1*01 TRBJ2-1*01 27.0 1731.0 CADPQAGTALIF_CASSQFSGGNEQFF 1 7943 EBV-BLMF1 EBV 0.43 2531 NEG 139 7804 3 EBV BLMF1 GLCTLVAML Naive T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*02:01 B2M MHCI -9379 chip0423_159438 9.51 13.05 Chip2 healthy_3 healthy TGTGCCAGCAGCCAACCGGGACGGACAGACGAGCAGTACTTC CASSQPGRTDEQYF TRBV12-3*01,TRBV12-4*01 TRBJ2-7*01 47.0 2295.0 _CASSQPGRTDEQYF 1 3304 ZNT8-107-115 ZNT8 0.42 10 NEG 130 3174 6 HomoSapiens ZNT8 LLIDLTSFL central memory T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*02:01 B2M MHCI -9380 chip0423_834054 10.97 10.59 Chip2 T1D_4 T1D TGTGCCAGCAGCTTAACGGTTCTGGCAGGTCCAAACACTGAAGCTTTCTTT CASSLTVLAGPNTEAFF TRBV7-3*01 TRBJ1-1*01 20.0 493.0 _CASSLTVLAGPNTEAFF 32 3402 BZLF1-190-197 EBV 0.91 2156 BZLF1-190-197 125 3277 9 EBV BZLF1 RAKFKQLL effector memory T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-B*08:01 B2M MHCI -9381 chip0423_32348 4.84 11.51 Chip2 healthy_4 healthy TGTGCCAGTAGTATGGTGGGTTCGGGCTACAATGAGCAGTTCTTC CASSMVGSGYNEQFF TRBV19*01 TRBJ2-1*01 37.0 1833.0 _CASSMVGSGYNEQFF 2 3413 M1 FLU 1.0 1250 NEG 121 3292 6 InfluenzaA M1 GILGFVFTL central memory T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*02:01 B2M MHCI -9382 chip0423_645906 8.28 11.33 Chip2 T1D_4 T1D TGCATCCTGCCTCTTGCTGGTGGTACTAGCTATGGCAAGCTGACATTT CILPLAGGTSYGKLTF TRAV26-2*01 TRAJ52*01 59.0 2570.0 TGTGCCAGCAGCTTAGGGCCCGCCTACGAGCAGTACTTC CASSLGPAYEQYF TRBV7-8*01 TRBJ2-7*01 2.0 50.0 CILPLAGGTSYGKLTF_CASSLGPAYEQYF 1 6815 EBNA3A-193-201 EBV 0.59 1022 NEG 141 6674 7 EBV EBNA3A FLRGRAYGL transitional T cells between effector and memory populations PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-B*08:01 B2M MHCI -9383 chip0423_633942 6.97 12.86 Chip2 healthy_3 healthy TGCGCTGATTACAGCAGTGCTTCCAAGATAATCTTT CADYSSASKIIF TRAV1-1*01 TRAJ3*01 19.0 1748.0 TGCGCCAGCAGCCAAGATGGACTAGCGGCAACTAGCACAGAGACGCAGTATTTT CASSQDGLAATSTETQYF TRBV4-1*01 TRBJ2-3*01 25.0 637.0 CADYSSASKIIF_CASSQDGLAATSTETQYF 1 4564 NP44-52 FLU 0.56 474 NEG 110 4454 7 InfluenzaA NP CTELKLSDY transitional T cells between effector and memory populations PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*01:01 B2M MHCI -9384 chip0423_625136 13.59 10.67 Chip2 T1D_5 T1D TGTGCAGCGGGGAAACCTCCTACGACAAGGTGATATTT CAAGKPc?cYDKVIF TRAV13-1*01 TRAJ50*01 1.0 46.0 TGTGCCAGCCAACTAGCGGGAGGCACCGGGGAGCTGTTTTTT CASQLAGGTGELFF TRBV24-1*01 TRBJ2-2*01 12.0 334.0 CAAGKPc?cYDKVIF_CASQLAGGTGELFF 1 3175 BZLF1-190-197 EBV 0.8 2156 NEG 127 3048 9 EBV BZLF1 RAKFKQLL effector memory T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-B*08:01 B2M MHCI -9385 chip0423_77663 9.8 9.16 Chip2 healthy_4 healthy TGTGCAGCAACCCTATATGACAAGATCATCTTT CAATLYDKIIF TRAV29/DV5*01 TRAJ30*01 1.0 22.0 TGCGCCAGCGGCTGGGGACTGGGACCTACCTACGAGCAGTAGTTT CASGWGLGPTYEQ*F TRBV4-1*01 TRBJ2-7*01 5.0 316.0 CAATLYDKIIF_CASGWGLGPTYEQ*F 1 3413 BZLF1-190-197 EBV 1.0 2156 NEG 111 3302 8 EBV BZLF1 RAKFKQLL effector memory T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-B*08:01 B2M MHCI -9386 chip0423_809875 -3.69 10.23 Chip2 T1D_6 T1D TGTGCAGAGAGGAGGGACCACAAGGCATCAGGAGGAAGCTACATACCTACATTT CAERRDHKASGGSYIPTF TRAV5*01 TRAJ6*01 2.0 59.0 TGTGACACCAGTGGGGCAGGGGCTTCGTCAGATACGCAGTATTGT CDTSGAGASSDTQYC TRBV24-1*01 TRBJ2-3*01 3.0 61.0 CAERRDHKASGGSYIPTF_CDTSGAGASSDTQYC 1 4460 ZNT8-16-24 ZNT8 0.71 39 ZNT8-16-24 136 4324 2 HomoSapiens ZNT8 KMYAFTLES Naive T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*02:01 B2M MHCI -9387 chip0423_785094 -2.84 8.88 Chip2 T1D_5 T1D TGCAGCGTTGTGGAGGAAAAACTGTTTTTT CSVVEEKLFF TRBV29-1*01 TRBJ1-4*01 57.0 5149.0 _CSVVEEKLFF 1 7562 IAPP-ILK-8 IAPP 0.42 20 NEG 139 7423 2 HomoSapiens IAPP ILKLQVFL Naive T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-B*08:01 B2M MHCI -9388 chip0423_704973 -4.31 8.48 Chip2 T1D_4 T1D TGTGCCGTCAAAGGTGGCTACAATAAGCTGATTTTT CAVKGGYNKLIF TRAV12-2*01 TRAJ4*01 21.0 1845.0 TGTGCCGTCAAAGGTGGCTACATAAGCTGATTTTT CAVKGgg?LHKLIF TRAV12-2*01 TRAJ4*01 20.0 1538.0 0.43 CAVKGGYNKLIF_ 1 3640 PGT-178 PGT 0.59 1480 PGT-178 121 3519 2 HomoSapiens PGT LLAGIGTVPI Naive T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*02:01 B2M MHCI -9389 chip0423_679638 13.84 11.06 Chip2 T1D_5 T1D _ 6746 2298 BZLF1-190-197 EBV 0.67 2156 NEG 111 2187 9 EBV BZLF1 RAKFKQLL effector memory T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-B*08:01 B2M MHCI -9390 chip0423_473024 12.01 12.56 Chip2 T1D_4 T1D TGCATCCTCCCACTTGCTGGTGGTACTAGCTATGGAAAGCTGACATTT CILPLAGGTSYGKLTF TRAV26-2*01 TRAJ52*01 2.0 130.0 TGTGCCAGCAGCTTAGCGGTCGGAGAAGGGCCCCAGCATTTT CASSLAVGEGPQHF TRBV7-9*01 TRBJ1-5*01 26.0 999.0 CILPLAGGTSYGKLTF_CASSLAVGEGPQHF 1 3162 BZLF1-190-197 EBV 0.84 2156 BZLF1-190-197 129 3033 11 EBV BZLF1 RAKFKQLL effector T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-B*08:01 B2M MHCI -9391 chip0423_737954 11.74 8.13 Chip2 T1D_5 T1D TGTGCAATGAGGGCCATTGAGGGGGCAAACAACCTCTTCTTT CAMRAIEGANNLFF TRAV14/DV4*01 TRAJ36*01 18.0 1004.0 TGCGCCAGCAGCCTCAGTTCGGGGGGCCGTGGCGAGCAGTACTTC CASSLSSGGRGEQYF TRBV4-1*01 TRBJ2-7*01 11.0 575.0 CAMRAIEGANNLFF_CASSLSSGGRGEQYF 4 3948 BZLF1-190-197 EBV 0.8 2156 BZLF1-190-197 123 3825 10 EBV BZLF1 RAKFKQLL effector memory T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-B*08:01 B2M MHCI -9392 chip0423_604345 12.36 10.36 Chip2 T1D_6 T1D TGTGCAGGTCGGGCAACCTCCTACGACAAGGTGATATTT CAGRATSYDKVIF TRAV13-1*01 TRAJ50*01 2.0 13.0 TGTGCCAGCAGCGTTAGCGGGGCCCCCTACGAGCAGTACTTC CASSVSGAPYEQYF TRBV9*01 TRBJ2-7*01 70.0 4229.0 CAGRATSYDKVIF_CASSVSGAPYEQYF 1 3502 EBNA3A-193-201 EBV 0.47 1022 NEG 145 3357 9 EBV EBNA3A FLRGRAYGL effector memory T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-B*08:01 B2M MHCI -9393 chip0423_174527 6.39 12.29 Chip2 T1D_6 T1D TGTGCAATGACCTTATCTAACTTTGGAAATGAGAAATTAACCTTT CAMTLSNFGNEKLTF TRAV12-3*01 TRAJ48*01 53.0 1962.0 TGTGCCTCTCGGGGGGCGCCGACTAATGAAAAACTGTTTTTA CASRGAPTNEKLFL TRBV6-1*01 TRBJ1-4*01 2.0 249.0 CAMTLSNFGNEKLTF_CASRGAPTNEKLFL 1 6030 PGT-178 PGT 0.7 1480 PGT-178 121 5909 7 HomoSapiens PGT LLAGIGTVPI transitional T cells between effector and memory populations PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*02:01 B2M MHCI -9394 chip0423_816994 6.71 13.79 Chip2 healthy_3 healthy _ 6746 4278 NP44-52 FLU 0.77 474 NP44-52 138 4140 7 InfluenzaA NP CTELKLSDY transitional T cells between effector and memory populations PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*01:01 B2M MHCI -9395 chip0423_569773 12.97 6.86 Chip2 T1D_6 T1D TGCATCCTCCCACTTGCTGGTGGTACTAGCTATGGAAAGCTGACATTT CILPLAGGTSYGKLTF TRAV26-2*01 TRAJ52*01 134.0 8009.0 TGTGCCAGCAGCTTGGGACAGGCCTACGAGCAGTACTTC CASSLGQAYEQYF TRBV7-8*01 TRBJ2-7*01 25.0 1395.0 CILPLAGGTSYGKLTF_CASSLGQAYEQYF 308 3344 EBNA3A-193-201 EBV 0.96 1022 EBNA3A-193-201 150 3194 10 EBV EBNA3A FLRGRAYGL effector memory T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-B*08:01 B2M MHCI -9396 chip0423_378759 6.68 12.76 Chip2 T1D_4 T1D TGCATCCTGCCTCTTGCTGGTGGTACTAGCTATGGAAAGCTGACATTT CILPLAGGTSYGKLTF TRAV26-2*01 TRAJ52*01 32.0 1928.0 TGTGCCAGCAGCTTAGGGCAAGCCTACGAGCAGTACTTC CASSLGQAYEQYF TRBV7-8*01 TRBJ2-7*01 9.0 560.0 CILPLAGGTSYGKLTF_CASSLGQAYEQYF 308 4273 EBNA3A-193-201 EBV 0.77 1022 NEG 126 4147 7 EBV EBNA3A FLRGRAYGL transitional T cells between effector and memory populations PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-B*08:01 B2M MHCI -9397 chip0423_344378 -3.71 7.33 Chip2 T1D_6 T1D TGTGCAATGAGCATATCTAACTTTGGAAATGAGAAATTAACCTTT CAMSISNFGNEKLTF TRAV12-3*01 TRAJ48*01 42.0 1237.0 TGTGCCAGCAGTTTGGTCCGGGGAGATGACACTGAAGCTTTCTTT CASSLVRGDDTEAFF TRBV28*01 TRBJ1-1*01 29.0 991.0 CAMSISNFGNEKLTF_CASSLVRGDDTEAFF 1 8300 PGT-178 PGT 0.65 1480 NEG 115 8185 3 HomoSapiens PGT LLAGIGTVPI Naive T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*02:01 B2M MHCI -9398 chip0423_296570 7.81 13.52 Chip2 healthy_4 healthy TGTGCCAGCAGGACAGGGACTTCACCCCTCCACTTT CASRTGTSPLHF TRAV24*01 TRAJ11*01 2.0 8.0 TGTGCCAGCAGGACAGGGACTTCACCCCTCCACTTT CASRTGTSPLHF TRBV28*01 TRBJ1-6*01 35.0 2630.0 CASRTGTSPLHF_CASRTGTSPLHF 1 2956 ZNT8-153-161 ZNT8 0.84 41 ZNT8-153-161 114 2842 7 HomoSapiens ZNT8 VVTGVLVYL transitional T cells between effector and memory populations PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*02:01 B2M MHCI -9399 chip0423_288519 15.94 10.84 Chip2 T1D_4 T1D TGCAGCGTTGGAACGGGGGGAACTAATGAAAAACTGTTTTTT CSVGTGGTNEKLFF TRBV29-1*01 TRBJ1-4*01 28.0 1267.0 _CSVGTGGTNEKLFF 638 2326 EBV-BLMF1 EBV 0.83 2531 NEG 133 2193 12 EBV BLMF1 GLCTLVAML effector T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*02:01 B2M MHCI -9400 chip0423_175445 11.75 7.25 Chip2 T1D_5 T1D TGTGCAATGAGAGAGCGCAAAGCTCGAGGTCTCAAGACTTTTTTT CAMRERKARGLKTFF TRAV14/DV4*01 TRAJ9*01 2.0 34.0 TGTGCCAGCAGCCCTACGACGGCTCGGACAGGGAATGGCTACACCTTC CASSPTTARTGNGYTF TRBV3-1*01 TRBJ1-2*01 67.0 2300.0 CAMRERKARGLKTFF_CASSPTTARTGNGYTF 1 5256 BZLF1-190-197 EBV 0.46 2156 BZLF1-190-197 154 5102 10 EBV BZLF1 RAKFKQLL effector memory T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-B*08:01 B2M MHCI -9401 chip0423_104088 -1.06 9.0 Chip2 T1D_4 T1D TGTGCTGTGCGGGTACAATAACAATGACATGCGCTTT CAVRVQ??tNNDMRF TRAV20*01 TRAJ43*01 18.0 1987.0 TGTGCCAGCAGTGAGGTTGCCTCCTATGGCTACACCTTC CASSEVASYGYTF TRBV25-1*01 TRBJ1-2*01 26.0 1756.0 CAVRVQ??tNNDMRF_CASSEVASYGYTF 1 7756 ZNT8-186-194 ZNT8 0.67 22 NEG 135 7621 3 HomoSapiens ZNT8 VAANIVLTV Naive T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*02:01 B2M MHCI -9402 chip0423_259055 6.09 13.97 Chip2 healthy_3 healthy TGTGTGGTGAACGGAGAAAATGCCGGACTCATGTTT CVVNGENAGLMF TRAV12-1*01 TRAJ31*01 8.0 610.0 TGTGCCAGCAGTGAAATGTGGGGAGCACCCCTCCACTTT CASSEMWGAPLHF TRBV2*01 TRBJ1-6*01 1.0 27.0 CVVNGENAGLMF_CASSEMWGAPLHF 1 5702 NP44-52 FLU 0.71 474 NP44-52 118 5584 7 InfluenzaA NP CTELKLSDY transitional T cells between effector and memory populations PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*01:01 B2M MHCI -9403 chip0423_752983 -1.08 8.0 Chip2 T1D_5 T1D TGTGCCAGCAGCCAAGCCGTCTCAACCTACGAGCAGTACTTC CASSQAVSTYEQYF TRBV4-2*01 TRBJ2-7*01 61.0 2870.0 _CASSQAVSTYEQYF 1 3911 EBNA3A-158-166 EBV 0.58 444 NEG 131 3780 4 EBV EBNA3A QAKWRLQTL Naive T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-B*08:01 B2M MHCI -9404 chip0423_589921 -0.65 7.17 Chip2 healthy_5 healthy TGTGCCAGCAGCGAGGCAGGGGGCCAATCCTCCTACAATGAGCAGTTCTTC CASSEAGGQSSYNEQFF TRBV11-1*01 TRBJ2-1*01 50.0 2815.0 _CASSEAGGQSSYNEQFF 1 7257 NP44-52 FLU 0.55 474 NEG 112 7145 3 InfluenzaA NP CTELKLSDY Naive T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*01:01 B2M MHCI -9405 chip0423_412646 -1.62 7.99 Chip2 T1D_4 T1D TGTGCCAGCAGCCCAGGGGTTGGCTACACTTTC CASSPGVGYTF TRBV5-8*01 TRBJ1-2*01 1.0 11.0 _CASSPGVGYTF 1 6266 NP140-148 FLU 0.82 102 NP140-148 124 6142 3 InfluenzaA NP HSNLNDATY Naive T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*01:01 B2M MHCI -9406 chip0423_599350 -3.53 13.31 Chip2 healthy_3 healthy TGTGCCAGCAGTTCGGGACTAGCGCACCCAGGGAATGAGCAGTTCTTC CASSSGLAHPGNEQFF TRBV12-3*01,TRBV12-4*01 TRBJ2-1*01 9.0 369.0 _CASSSGLAHPGNEQFF 1 3306 PGT-178 PGT 0.9 1480 NEG 119 3187 1 HomoSapiens PGT LLAGIGTVPI Naive T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*02:01 B2M MHCI -9407 chip0423_381659 -3.14 10.41 Chip2 healthy_3 healthy _ 6746 4100 PGT-178 PGT 0.67 1480 PGT-178 105 3995 2 HomoSapiens PGT LLAGIGTVPI Naive T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*02:01 B2M MHCI -9408 chip0423_783971 10.95 10.21 Chip2 T1D_4 T1D TGTGCTGCAGGTGCTCTGGAGCCACTAGTACGCTGACGTTT CAAGALga?ATSTLTF TRAV8-3*01 TRAJ56*01 20.0 1793.0 TGTGCCGTCTGGAGGGACGGAGCCTACGAGCAGTACTTC CAVWRDGAYEQYF TRBV28*01 TRBJ2-7*01 10.0 448.0 CAAGALga?ATSTLTF_CAVWRDGAYEQYF 1 6313 EBV-LMP1-1 EBV 0.53 237 NEG 113 6200 9 EBV LMP1 YLLEMLWRL effector memory T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*02:01 B2M MHCI -9409 chip0423_229111 -3.43 12.11 Chip2 T1D_6 T1D TGTGCAATGAGCCTATCTAACTTTGGAAATGAGAAATTAACCTTT CAMSLSNFGNEKLTF TRAV12-3*01 TRAJ48*01 2.0 19.0 CAMSLSNFGNEKLTF_ 16 5175 PGT-178 PGT 0.8 1480 PGT-178 123 5052 1 HomoSapiens PGT LLAGIGTVPI Naive T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*02:01 B2M MHCI -9410 chip0423_45943 0.0 6.33 Chip2 healthy_3 healthy TGTGCCAGCAGTTTCTCCCAGGGGTGGACTGAAGCTTTCTTT CASSFSQGWTEAFF TRBV6-5*01 TRBJ1-1*01 2.0 104.0 _CASSFSQGWTEAFF 1 11583 PGT-178 PGT 0.67 1480 PGT-178 110 11473 3 HomoSapiens PGT LLAGIGTVPI Naive T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*02:01 B2M MHCI -9411 chip0423_425206 9.07 11.42 Chip2 T1D_5 T1D TGTGCCAGCAGCCAATTGGGGGAGGCGAAGGAAGGCACTGAAGCTTTCTTT CASSQLGEAKEGTEAFF TRBV11-1*01 TRBJ1-1*01 29.0 780.0 _CASSQLGEAKEGTEAFF 14 3623 BZLF1-190-197 EBV 0.62 2156 NEG 135 3488 7 EBV BZLF1 RAKFKQLL transitional T cells between effector and memory populations PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-B*08:01 B2M MHCI -9412 chip0423_286478 14.74 9.06 Chip2 healthy_4 healthy TGTGCCAGCAGCTCCGGACAGGCCTACGAGCAGTACTTC CASSSGQAYEQYF TRBV7-8*01 TRBJ2-7*01 37.0 1858.0 _CASSSGQAYEQYF 49 2458 EBNA3A-193-201 EBV 0.69 1022 NEG 123 2335 12 EBV EBNA3A FLRGRAYGL effector T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-B*08:01 B2M MHCI -9413 chip0423_861310 6.52 14.25 Chip2 healthy_3 healthy TGTGCTCTGAGTTCTTATTCTGGGGGTTACCAGAAAGTTACCTTT CALSSYSGGYQKVTF TRAV19*01 TRAJ13*01 64.0 2464.0 TGCAGTGCCGATTCCTACCGGGACATTGATAACTATGGCTACACCTTC CSADSYRDIDNYGYTF TRBV20-1*01 TRBJ1-2*01 20.0 945.0 CALSSYSGGYQKVTF_CSADSYRDIDNYGYTF 2 4593 NP44-52 FLU 0.6 474 NP44-52 128 4465 7 InfluenzaA NP CTELKLSDY transitional T cells between effector and memory populations PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*01:01 B2M MHCI -9414 chip0423_656650 11.73 12.04 Chip2 T1D_4 T1D TGTGCTGTGAGTGATGGAGAAGGAGCCCAGAAGCTGGTATTT CAVSDGEGAQKLVF TRAV8-6*01 TRAJ54*01 75.0 2983.0 TGTGCCAGCAGCTTAACGGTTCTGGCAGGTCCAAACACTGAAGCTTTCTTT CASSLTVLAGPNTEAFF TRBV7-3*01 TRBJ1-1*01 24.0 793.0 CAVSDGEGAQKLVF_CASSLTVLAGPNTEAFF 44 3117 BZLF1-190-197 EBV 0.91 2156 BZLF1-190-197 141 2976 10 EBV BZLF1 RAKFKQLL effector memory T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-B*08:01 B2M MHCI -9415 chip0423_538246 -1.96 9.54 Chip2 T1D_5 T1D TGTGCCAGCAGTGAAGCATTGAGGGGGCAGGGCAATCAGCCCCAGCATTTT CASSEALRGQGNQPQHF TRBV2*01 TRBJ1-5*01 55.0 2038.0 _CASSEALRGQGNQPQHF 1 5042 GFAP-HLK-8 GFAP 0.76 28 GFAP-HLK-8 98 4944 3 HomoSapiens GFAP HLKRNIVV Naive T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-B*08:01 B2M MHCI -9416 chip0423_351608 8.8 11.86 Chip2 T1D_4 T1D TGCATCCTCCCCCTTGCTGGTGGTACTAGCTATGGAAAGCTGACATTT CILPLAGGTSYGKLTF TRAV26-2*01 TRAJ52*01 48.0 1906.0 CILPLAGGTSYGKLTF_ 55 4661 EBNA3A-193-201 EBV 0.82 1022 EBNA3A-193-201 132 4529 7 EBV EBNA3A FLRGRAYGL transitional T cells between effector and memory populations PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-B*08:01 B2M MHCI -9417 chip0423_334845 10.68 11.78 Chip2 T1D_4 T1D TGTGCTGTGAGTGATGGAGAAGGAGCCCAGAAGCTGGTATTT CAVSDGEGAQKLVF TRAV8-6*01 TRAJ54*01 31.0 1434.0 CAVSDGEGAQKLVF_ 12 3377 BZLF1-190-197 EBV 0.98 2156 BZLF1-190-197 127 3250 9 EBV BZLF1 RAKFKQLL effector memory T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-B*08:01 B2M MHCI -9418 chip0423_191465 9.04 8.8 Chip2 T1D_5 T1D TGTGCCAGCAGCATCCTGGTTGGGGGGTCGGACGAGCAGTACTTC CASSILVGGSDEQYF TRBV5-6*01 TRBJ2-7*01 14.0 686.0 _CASSILVGGSDEQYF 1 5366 BZLF1-190-197 EBV 0.81 2156 BZLF1-190-197 138 5228 8 EBV BZLF1 RAKFKQLL effector memory T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-B*08:01 B2M MHCI -9419 chip0423_536674 10.2 7.33 Chip2 T1D_4 T1D TGTGCAGAGAGTACAGGCACACTAATCTTT CAESTGTLIF TRAV5*01 TRAJ37*01 1.0 22.0 CAESTGTLIF_ 1 7591 EBV-LMP1-1 EBV 0.5 237 NEG 124 7467 10 EBV LMP1 YLLEMLWRL effector memory T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*02:01 B2M MHCI -9420 chip0423_360333 14.48 11.29 Chip2 T1D_5 T1D _ 6746 1796 BZLF1-190-197 EBV 0.5 2156 NEG 133 1663 12 EBV BZLF1 RAKFKQLL effector T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-B*08:01 B2M MHCI -9421 chip0423_868515 11.98 6.9 Chip2 T1D_5 T1D _ 6746 4918 BZLF1-190-197 EBV 0.75 2156 NEG 155 4763 10 EBV BZLF1 RAKFKQLL effector memory T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-B*08:01 B2M MHCI -9422 chip0423_336962 -2.61 14.43 Chip2 T1D_4 T1D TGTGCCTCGGGAGGAAAGCTTATCTTC CASGGKLIF TRAV12-2*01 TRAJ23*01 4.0 458.0 TGTGCCACCAGTGATTTGGACAGGGGGCTGGATACGCAGTATTTT CATSDLDRGLDTQYF TRBV24-1*01 TRBJ2-3*01 34.0 1323.0 CASGGKLIF_CATSDLDRGLDTQYF 1 2471 PGT-178 PGT 0.74 1480 NEG 119 2352 1 HomoSapiens PGT LLAGIGTVPI Naive T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*02:01 B2M MHCI -9423 chip0423_237216 10.94 7.78 Chip2 healthy_3 healthy TGTGCCAGCAGCCAAGAGGGAGGTGGCGGGTACGAGCAGTACTTC CASSQEGGGGYEQYF TRBV4-2*01 TRBJ2-7*01 6.0 226.0 _CASSQEGGGGYEQYF 2 5835 EBV-LMP1-2 EBV 0.7 41 NEG 116 5719 6 EBV LMP1 YLQQNWWTL central memory T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*02:01 B2M MHCI -9424 chip0423_871741 -2.29 9.32 Chip2 T1D_6 T1D TGCAGTGCTGGAACCTCATCACAGGTTCGAGAGGAGACCCAGTACGTC CSAGTSSQVREETQYV TRBV20-1*01 TRBJ2-5*01 5.0 305.0 _CSAGTSSQVREETQYV 1 6612 PGT-178 PGT 0.86 1480 PGT-178 123 6489 3 HomoSapiens PGT LLAGIGTVPI Naive T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*02:01 B2M MHCI -9425 chip0423_720594 15.37 10.95 Chip2 T1D_5 T1D TGTGCAGCAACGGAAACCTCCTACGACAAGGTGATATTT CAATETSYDKVIF TRAV13-1*01 TRAJ50*01 37.0 2499.0 TGTGCCAGCAGTCCCCCGGGGAGAAATGAAAAACTGTTTTTT CASSPPGRNEKLFF TRBV12-3*01,TRBV12-4*01 TRBJ1-4*01 114.0 4208.0 CAATETSYDKVIF_CASSPPGRNEKLFF 34 2414 BZLF1-190-197 EBV 0.57 2156 NEG 124 2290 12 EBV BZLF1 RAKFKQLL effector T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-B*08:01 B2M MHCI -9426 chip0423_496754 9.64 11.15 Chip2 healthy_4 healthy TGTGCTGTGGAGGATCAAGGAAGATCTTATAACACCGACAAGCTCATCTTT CAVEDQGRSYNTDKLIF TRAV2*01 TRAJ34*01 154.0 3997.0 TGTGCCAGCAGCTTAAACGTCGGGGAGGGCGCAGGAAACACCATATATTTT CASSLNVGEGAGNTIYF TRBV7-6*01 TRBJ1-3*01 2.0 45.0 CAVEDQGRSYNTDKLIF_CASSLNVGEGAGNTIYF 10 4114 BZLF1-190-197 EBV 0.8 2156 NEG 134 3980 9 EBV BZLF1 RAKFKQLL effector memory T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-B*08:01 B2M MHCI -9427 chip0423_51771 14.66 10.57 Chip2 T1D_5 T1D TGTGCAGCAACGGAAACCTCCTACGACAAGGTGATATTT CAATETSYDKVIF TRAV13-1*01 TRAJ50*01 13.0 973.0 TGTGCCAGCAGTCCCCCGGGGAGAAATGAAAAACTGTTTTTT CASSPPGRNEKLFF TRBV12-3*01,TRBV12-4*01 TRBJ1-4*01 101.0 3623.0 CAATETSYDKVIF_CASSPPGRNEKLFF 34 2318 BZLF1-190-197 EBV 0.64 2156 NEG 120 2198 12 EBV BZLF1 RAKFKQLL effector T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-B*08:01 B2M MHCI -9428 chip0423_50790 10.95 11.41 Chip2 T1D_4 T1D TGTACCAGCAGCTTAGCGGTCGGCGCAGGGCCCCAGCATTTT CTSSLAVGAGPQHF TRBV7-9*01 TRBJ1-5*01 11.0 538.0 _CTSSLAVGAGPQHF 1 3295 BZLF1-190-197 EBV 0.95 2156 BZLF1-190-197 143 3152 9 EBV BZLF1 RAKFKQLL effector memory T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-B*08:01 B2M MHCI -9429 chip0423_639442 7.11 10.3 Chip2 healthy_3 healthy TGTGCAGCCCTATTATGGAGGAAGCCAAGGAAATCTCATCTTT CAALLWR??aSQGNLIF TRAV25*01 TRAJ42*01 6.0 368.0 CAALLWR??aSQGNLIF_ 1 7891 NP44-52 FLU 0.65 474 NP44-52 130 7761 7 InfluenzaA NP CTELKLSDY transitional T cells between effector and memory populations PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*01:01 B2M MHCI -9430 chip0423_439098 -3.8 9.94 Chip2 healthy_3 healthy TGTGCTTTCATGAATCTCCAGGGCGGATCTGAAAAGCTGGTCTTT CAFMNLQGGSEKLVF TRAV38-1*01 TRAJ57*01 1.0 16.0 TGTGCCAGCAACTTTCCGGCAGCTAACTCCTACGAGCAGTACTTC CASNFPAANSYEQYF TRBV6-1*01 TRBJ2-7*01 19.0 905.0 CAFMNLQGGSEKLVF_CASNFPAANSYEQYF 1 5381 HCVNS3-1073-1081 HCV 0.57 36 NEG 126 5255 2 HCV NS3 CINGVCWTV Naive T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*02:01 B2M MHCI -9431 chip0423_860058 -2.09 9.19 Chip2 T1D_5 T1D TGTGCTGTGTATTCTAACGACTACAAGCTCAGCTTT CAVYSNDYKLSF TRAV12-2*01 TRAJ20*01 29.0 2058.0 TGTGCCAGCACACAGGGGGGCTATGGCTACACCTTC CASTQGGYGYTF TRBV2*01 TRBJ1-2*01 16.0 1669.0 CAVYSNDYKLSF_CASTQGGYGYTF 1 5226 NP413-421 FLU 0.42 16 NEG 110 5116 3 InfluenzaA NP ALKCKGFHV Naive T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-B*08:01 B2M MHCI -9432 chip0423_479377 -2.92 14.05 Chip2 T1D_6 T1D TGCAGTGCTATTTCCCGGGACAGTCCCCTTCTTCTCTATGGCTACACCTTC CSAISRDSPLLLYGYTF TRBV20-1*01 TRBJ1-2*01 1.0 86.0 _CSAISRDSPLLLYGYTF 1 3490 HCVNS4B-1807-1816 HCV 0.79 74 NEG 128 3362 1 HCV NS4B LLFNILGGWV Naive T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*02:01 B2M MHCI -9433 chip0423_410585 11.31 9.18 Chip2 T1D_6 T1D TGCATCCTCCCACTTGCTGGTGGTACTAGCTATGGAAAGCTGACATTT CILPLAGGTSYGKLTF TRAV26-2*01 TRAJ52*01 55.0 2340.0 TGTGCCAGCAGCTTGGGACAGGCCTACGAGCAGTACTTC CASSLGQAYEQYF TRBV7-8*01 TRBJ2-7*01 23.0 1221.0 CILPLAGGTSYGKLTF_CASSLGQAYEQYF 308 3449 EBNA3A-193-201 EBV 0.79 1022 NEG 129 3320 10 EBV EBNA3A FLRGRAYGL effector memory T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-B*08:01 B2M MHCI -9434 chip0423_580365 11.2 6.94 Chip2 T1D_5 T1D TGTGCAGCATCAGAAACCTCCTACGACAAGGTGATATTT CAASETSYDKVIF TRAV13-1*01 TRAJ50*01 94.0 4210.0 TGTGCCAGCAGCCGCTTGGGGGGGGAGACCGGGGAGCTGTTTTTT CASSRLGGETGELFF TRBV7-2*01 TRBJ2-2*01 11.0 452.0 CAASETSYDKVIF_CASSRLGGETGELFF 3 4149 BZLF1-190-197 EBV 0.68 2156 BZLF1-190-197 126 4023 10 EBV BZLF1 RAKFKQLL effector memory T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-B*08:01 B2M MHCI -9435 chip0423_266882 -0.63 6.94 Chip2 T1D_4 T1D TGTGCCAGCAGCCGGGTTCGGGGAAGGAACACCGAAGCTTTCTTT CASSRVRGRNTEAFF TRAV36/DV7*01 TRAJ40*01 2.0 8.0 TGTGCCAGCAGCCGGGTTAGGGGAAGGAACACTGAAGCTTTCTTT CASSRVRGRNTEAFF TRBV7-9*01 TRBJ1-1*01 64.0 2656.0 CASSRVRGRNTEAFF_CASSRVRGRNTEAFF 1 9831 gp160-586-593 HIV 0.77 30 gp160-586-593 122 9709 3 HIV-1 gp160 YLKDQQLL Naive T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-B*08:01 B2M MHCI -9436 chip0423_768342 -4.55 9.36 Chip2 T1D_6 T1D TGTGCAACGGGCGTGGATTTTGGAGGAACACAACGAAATCTCATCTTT CATGVDFGGTQRNLIF TRAV12-3*01 TRAJ42*01 4.0 114.0 TGTGCCAGCAGTTTAGACACTTCCTACGAGCAGTACTTC CASSLDTSYEQYF TRBV12-3*01,TRBV12-4*01 TRBJ2-7*01 16.0 1037.0 CATGVDFGGTQRNLIF_CASSLDTSYEQYF 1 7869 IAPP-EVL-8 IAPP 0.87 1 IAPP-EVL-8 127 7742 2 HomoSapiens IAPP EVLKREPL Naive T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-B*08:01 B2M MHCI -9437 chip0423_407539 -3.58 11.64 Chip2 T1D_5 T1D TGTGCCAGCAGCTTGCGGGGCCTTAATTCACCCCTCCACTTT CASSLRGLNSPLHF TRBV9*01 TRBJ1-6*01 48.0 2629.0 _CASSLRGLNSPLHF 1 4271 GAD2-EAK-10 GAD65 0.82 14 GAD2-EAK-10 116 4155 1 HomoSapiens GAD2 EAKQKGFVPF Naive T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-B*08:01 B2M MHCI -9438 chip0423_376001 -4.04 7.69 Chip2 T1D_4 T1D TGTGCCGTGCATCAAACTGGGGCAAACAACCTCTTCCTT CAVHQTGANNLFL TRAV12-2*01 TRAJ36*01 28.0 2020.0 TGCGCCAGCAGCCCTGGGGGGGGAGGACAGCCCCAGCATTTT CASSPGGGGQPQHF TRBV4-1*01 TRBJ1-5*01 19.0 1162.0 CAVHQTGANNLFL_CASSPGGGGQPQHF 1 7366 MART1-ALA MART1 0.74 269 MART1-ALA 108 7258 2 HomoSapiens MART1 ALAGIGILTV Naive T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*02:01 B2M MHCI -9439 chip0423_318363 13.51 9.48 Chip2 T1D_5 T1D TGCGCCAGCAGCCTCAGTTCGGGGGGCCGTGGCGAGCAGTACTTC CASSLSSGGRGEQYF TRBV4-1*01 TRBJ2-7*01 14.0 981.0 _CASSLSSGGRGEQYF 11 3089 BZLF1-190-197 EBV 0.64 2156 NEG 124 2965 12 EBV BZLF1 RAKFKQLL effector T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-B*08:01 B2M MHCI -9440 chip0423_141260 9.53 10.33 Chip2 healthy_3 healthy TGTGCCAGCAGCCAGATGTCAGATACGCAGTATTTT CASSQMSDTQYF TRBV6-2*01,TRBV6-3*01 TRBJ2-3*01 1.0 25.0 _CASSQMSDTQYF 6 6853 EBV-BRLF1 EBV 0.8 1264 EBV-BRLF1 105 6748 9 EBV BRLF1 YVLDHLIVV effector memory T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*02:01 B2M MHCI -9441 chip0423_121004 -4.31 8.59 Chip2 T1D_4 T1D TGTGCCGTGAACCCGAATTCAGGAAACACACCTCTTGTCTTT CAVNPNSGNTPLVF TRAV12-2*01 TRAJ29*01 28.0 1833.0 TGTGCCAGCAGTCCACTAGCGGGTCAATTAGCCAAAAACATTCAGTACTTC CASSPLAGQLAKNIQYF TRBV12-3*01,TRBV12-4*01 TRBJ2-4*01 83.0 3924.0 CAVNPNSGNTPLVF_CASSPLAGQLAKNIQYF 1 6531 MART1-ALA MART1 0.47 269 NEG 118 6413 2 HomoSapiens MART1 ALAGIGILTV Naive T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*02:01 B2M MHCI -9442 chip0423_5977 13.21 7.95 Chip2 T1D_4 T1D TGTGCCAGCAGCTTAACGGTTCTGGCAGGTCCAAACACTGAAGCTTTCTTT CASSLTVLAGPNTEAFF TRBV7-3*01 TRBJ1-1*01 20.0 703.0 _CASSLTVLAGPNTEAFF 32 3629 BZLF1-190-197 EBV 1.0 2156 BZLF1-190-197 118 3511 10 EBV BZLF1 RAKFKQLL effector memory T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-B*08:01 B2M MHCI -9443 chip0423_755385 -3.11 8.75 Chip2 T1D_4 T1D TGCGCCAGCAGCCAAGCGACGAGCTATGGCTACACCTTC CASSQATSYGYTF TRBV4-1*01 TRBJ1-2*01 5.0 242.0 _CASSQATSYGYTF 1 8843 PGT-178 PGT 0.78 1480 PGT-178 113 8730 2 HomoSapiens PGT LLAGIGTVPI Naive T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*02:01 B2M MHCI -9444 chip0423_353125 -1.2 10.03 Chip2 T1D_4 T1D TGTGCTCTGAGTGTAGGGAACACCGACAAGCTCATCTTT CALSVGNTDKLIF TRAV19*01 TRAJ34*01 20.0 1871.0 TGTGCCAGCAGCTTGGGTGCCGTGGCTTTCTTT CASSLGAVAFF TRBV5-4*01 TRBJ1-1*01 15.0 1233.0 CALSVGNTDKLIF_CASSLGAVAFF 1 5302 NP44-52 FLU 0.96 474 NP44-52 107 5195 4 InfluenzaA NP CTELKLSDY Naive T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*01:01 B2M MHCI -9445 chip0423_308534 5.33 11.71 Chip2 T1D_4 T1D TGTGCAGCAAGAACCTCCTACGACAAGGTGATATTT CAARTSYDKVIF TRAV13-1*01 TRAJ50*01 2.0 59.0 TGTGCCAGCAGCCCGGGAACTTCACCCCTCCACTTT CASSPGTSPLHF TRBV4-2*01 TRBJ1-6*01 64.0 3717.0 CAARTSYDKVIF_CASSPGTSPLHF 2 5235 GFAP-143-151 GFAP 0.92 5 GFAP-143-151 119 5116 6 HomoSapiens GFAP NLAQDLATV central memory T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*02:01 B2M MHCI -9446 chip0423_20094 7.96 11.75 Chip2 T1D_4 T1D TGCATCCTGAGAGATTCCCTTGGTGGTACTAGCTATGGAAAGCTGACATTT CILRDSLGGTSYGKLTF TRAV26-2*01 TRAJ52*01 20.0 513.0 CILRDSLGGTSYGKLTF_ 2 4974 EBNA3A-193-201 EBV 0.82 1022 NEG 119 4855 7 EBV EBNA3A FLRGRAYGL transitional T cells between effector and memory populations PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-B*08:01 B2M MHCI -9447 chip0423_705392 6.63 12.39 Chip2 healthy_3 healthy TGTGCCAGCACGGGGACTAGCGATAGCACAGATACGCAGTATTTT CASTGTSDSTDTQYF TRBV2*01 TRBJ2-3*01 104.0 5056.0 _CASTGTSDSTDTQYF 9 5210 NP44-52 FLU 0.81 474 NP44-52 131 5079 7 InfluenzaA NP CTELKLSDY transitional T cells between effector and memory populations PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*01:01 B2M MHCI -9448 chip0423_376660 -3.2 13.33 Chip2 T1D_6 T1D TGTGCAATGAGTAGGTCTAACTTTGGAAATGAGAAATTAACCTTT CAMSRSNFGNEKLTF TRAV12-3*01 TRAJ48*01 78.0 2394.0 TGTGCCAGCAGTTCGTCCCAAAGGGACACCGGGGAGCTGTTTTTT CASSSSQRDTGELFF TRBV12-3*01,TRBV12-4*01 TRBJ2-2*01 17.0 1054.0 CAMSRSNFGNEKLTF_CASSSSQRDTGELFF 1 4435 PGT-178 PGT 0.78 1480 NEG 133 4302 1 HomoSapiens PGT LLAGIGTVPI Naive T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*02:01 B2M MHCI -9449 chip0423_499672 7.4 11.83 Chip2 healthy_4 healthy TGCAGCGTTGGCGCAGGGGGAACTAATGAAAAACTGTTTTTT CSVGAGGTNEKLFF TRBV29-1*01 TRBJ1-4*01 182.0 7861.0 _CSVGAGGTNEKLFF 51 4236 EBV-BLMF1 EBV 0.88 2531 NEG 136 4100 7 EBV BLMF1 GLCTLVAML transitional T cells between effector and memory populations PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*02:01 B2M MHCI -9450 chip0423_317802 -2.6 7.89 Chip2 T1D_5 T1D TGTGCCAGTTATAACAAGCGTACCGTCACCGGGGAGCTGTTTTTT CASYNKRTVTGELFF TRBV19*01 TRBJ2-2*01 35.0 1278.0 _CASYNKRTVTGELFF 1 5927 IAPP-MGI-9 IAPP 0.6 5 NEG 100 5827 2 HomoSapiens IAPP MGILKLQVF Naive T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-B*08:01 B2M MHCI -9451 chip0423_270848 -2.72 13.1 Chip2 T1D_6 T1D TGTGCAATGAGTAGGTCTAACTTTGGAAATGAGAAATTAACCTTT CAMSRSNFGNEKLTF TRAV12-3*01 TRAJ48*01 51.0 1953.0 TGCGCCAGCAGCCAAGATTCCAGGGGAACGACAGGGAGCAACTATGGCTACACCTTC CASSQDSRGTTGSNYGYTF TRBV4-1*01 TRBJ1-2*01 18.0 594.0 CAMSRSNFGNEKLTF_CASSQDSRGTTGSNYGYTF 1 3808 PGT-178 PGT 0.93 1480 NEG 119 3689 1 HomoSapiens PGT LLAGIGTVPI Naive T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*02:01 B2M MHCI -9452 chip0423_246857 -2.84 10.45 Chip2 T1D_5 T1D TGCGCCAGCAGCTTGAGTGGGGAAGGGGGAATGGACGGGGAGCAGTTCTTC CASSLSGEGGMDGEQFF TRBV5-1*01 TRBJ2-1*01 23.0 804.0 _CASSLSGEGGMDGEQFF 1 5671 GFAP-HLK-8 GFAP 0.95 28 GFAP-HLK-8 129 5542 3 HomoSapiens GFAP HLKRNIVV Naive T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-B*08:01 B2M MHCI -9453 chip0423_553079 -1.35 8.24 Chip2 healthy_4 healthy _ 6746 6285 GP160-311-320 HIV 0.44 109 NEG 108 6177 3 HIV-1 GP160 RGPGRAFVTI Naive T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*02:01 B2M MHCI -9454 chip0423_395957 -2.91 13.13 Chip2 T1D_5 T1D TGTGCTGTGAATTCAGGAGGAGGTGCTGACGGCCTCACCTTT CAVNSGGGADGLTF TRAV8-3*01 TRAJ45*01 6.0 205.0 CAVNSGGGADGLTF_ 2 4298 G6PC2-LTS-10 IGRP 0.87 59 G6PC2-LTS-10 143 4155 1 HomoSapiens G6PC2 LTSLTILQLY Naive T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*01:01 B2M MHCI -9455 chip0423_516484 11.11 10.31 Chip2 T1D_4 T1D TGTGCTGTGAGTGATGGAGAAGGAGCCCAGAAGCTGGTATTT CAVSDGEGAQKLVF TRAV8-6*01 TRAJ54*01 54.0 2419.0 TGTGCCAGCAGCTTAACGGTTCTGGCAGGTCCAAACACTGAAGCTCTCTTT CASSLTVLAGPNTEALF TRBV7-3*01 TRBJ1-1*01 32.0 1228.0 CAVSDGEGAQKLVF_CASSLTVLAGPNTEALF 1 4227 BZLF1-190-197 EBV 0.67 2156 BZLF1-190-197 149 4078 9 EBV BZLF1 RAKFKQLL effector memory T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-B*08:01 B2M MHCI -9456 chip0423_741338 9.25 9.23 Chip2 healthy_4 healthy TGTGCCAGCAGGGTAGGCCGAGAACCCACCGGGGAGCTGTTTTTT CASRVGREPTGELFF TRBV3-1*01 TRBJ2-2*01 55.0 2741.0 _CASRVGREPTGELFF 13 6281 BZLF1-190-197 EBV 0.9 2156 BZLF1-190-197 142 6139 8 EBV BZLF1 RAKFKQLL effector memory T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-B*08:01 B2M MHCI -9457 chip0423_680085 -3.47 11.68 Chip2 healthy_4 healthy TGTGTTGTGAGTGAACGGCTCGACTACAAGCTCAGCTTT CVVSERLDYKLSF TRAV8-2*01 TRAJ20*01 28.0 1982.0 TGTGCCAGCAGCCCGCGCACAGGGTCCGGCGAGCAGTACTTC CASSPRTGSGEQYF TRBV7-8*01 TRBJ2-7*01 16.0 1048.0 CVVSERLDYKLSF_CASSPRTGSGEQYF 1 4619 PREINS-6-14 INS 0.75 20 NEG 120 4499 1 HomoSapiens PREINS RLLPLLALL Naive T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*02:01 B2M MHCI -9458 chip0423_625734 5.99 13.49 Chip2 healthy_3 healthy TGTGCCAGCAGTTTGCGGCTACTACCACCACAATGAGCAGTTCTTC CASSLRLct??acHHNEQFF TRBV27*01 TRBJ2-1*01 1.0 50.0 _CASSLRLct??acHHNEQFF 1 4893 M1 FLU 0.57 1250 NEG 118 4775 7 InfluenzaA M1 GILGFVFTL transitional T cells between effector and memory populations PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*02:01 B2M MHCI -9459 chip0423_790787 11.65 13.16 Chip2 T1D_5 T1D TGTGCAATGAGGGCCATTGAGGGGGCAAACAACCTCTTCTTT CAMRAIEGANNLFF TRAV14/DV4*01 TRAJ36*01 37.0 2010.0 CAMRAIEGANNLFF_ 17 1961 BZLF1-190-197 EBV 0.86 2156 NEG 121 1840 11 EBV BZLF1 RAKFKQLL effector T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-B*08:01 B2M MHCI -9460 chip0423_635086 7.74 14.2 Chip2 T1D_5 T1D TGTGCAGCAAGGGAAACCTCCTACGACAAGGTGATATTT CAARETSYDKVIF TRAV13-1*01 TRAJ50*01 40.0 2352.0 CAARETSYDKVIF_ 15 3314 BZLF1-190-197 EBV 0.8 2156 NEG 116 3198 7 EBV BZLF1 RAKFKQLL transitional T cells between effector and memory populations PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-B*08:01 B2M MHCI -9461 chip0423_609838 8.83 10.41 Chip2 T1D_4 T1D TGTGCCAGCAGCTTAACGGTTCTGGCAGGTCCAAACACCGAAGCTTTCTTT CASSLTVLAGPNTEAFF TRBV7-3*01 TRBJ1-1*01 8.0 273.0 _CASSLTVLAGPNTEAFF 32 6416 BZLF1-190-197 EBV 0.83 2156 BZLF1-190-197 180 6236 8 EBV BZLF1 RAKFKQLL effector memory T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-B*08:01 B2M MHCI -9462 chip0423_562964 10.26 10.44 Chip2 healthy_4 healthy TGTGCTGTGGAGGATCAAGGGAGATCTTATAACACCGACAAGCTCATCTTT CAVEDQGRSYNTDKLIF TRAV2*01 TRAJ34*01 64.0 1374.0 CAVEDQGRSYNTDKLIF_ 15 6095 BZLF1-190-197 EBV 0.72 2156 NEG 123 5972 9 EBV BZLF1 RAKFKQLL effector memory T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-B*08:01 B2M MHCI -9463 chip0423_413018 12.56 6.64 Chip2 T1D_5 T1D TGTGCCAGCAGCCCCTTGGGAGAGGTGAACGAGCAGTACTTC CASSPLGEVNEQYF TRBV7-9*01 TRBJ2-7*01 56.0 3233.0 _CASSPLGEVNEQYF 1 4296 BZLF1-190-197 EBV 0.57 2156 NEG 136 4160 10 EBV BZLF1 RAKFKQLL effector memory T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-B*08:01 B2M MHCI -9464 chip0423_322224 6.7 10.8 Chip2 healthy_4 healthy TGTGCCAGTAGTGAAGGGACAGGGAGCGGGGAGACCCAGTACTTC CASSEGTGSGETQYF TRBV19*01 TRBJ2-5*01 31.0 1666.0 _CASSEGTGSGETQYF 1 5363 EBV-LMP1-1 EBV 0.67 237 NEG 135 5228 7 EBV LMP1 YLLEMLWRL transitional T cells between effector and memory populations PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*02:01 B2M MHCI -9465 chip0423_170323 -2.13 8.09 Chip2 healthy_3 healthy TGTGCCAGCAGGGGGCCAGTTGGGATTGCGCAGTTCTTC CASRGPVGIAQFF TRBV28*01 TRBJ2-1*01 6.0 395.0 _CASRGPVGIAQFF 1 7005 PGT-178 PGT 0.61 1480 PGT-178 108 6897 2 HomoSapiens PGT LLAGIGTVPI Naive T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*02:01 B2M MHCI -9466 chip0423_835798 13.84 10.59 Chip2 T1D_5 T1D TGTGCCAGCTCCCAGTTGGGGGGGGTTTACAATGAGCAGTTCTTC CASSQLGGVYNEQFF TRBV7-9*01 TRBJ2-1*01 27.0 1203.0 _CASSQLGGVYNEQFF 13 2780 BZLF1-190-197 EBV 0.58 2156 BZLF1-190-197 113 2667 12 EBV BZLF1 RAKFKQLL effector T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-B*08:01 B2M MHCI -9467 chip0423_726204 10.72 10.18 Chip2 T1D_5 T1D TGTGCCAGCAGCTTATTAGGACGATCGAACACTGAAGTTTTCTTT CASSLLGRSNTEVFF TRBV7-9*01 TRBJ1-1*01 67.0 2435.0 _CASSLLGRSNTEVFF 2 4420 BZLF1-190-197 EBV 0.63 2156 NEG 150 4270 9 EBV BZLF1 RAKFKQLL effector memory T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-B*08:01 B2M MHCI -9468 chip0423_487420 -3.05 10.51 Chip2 T1D_4 T1D TGTGCCGTGAGTGGGGCTAACTTTGGAAATGAGAAATTAACCTTT CAVSGANFGNEKLTF TRAV12-2*01 TRAJ48*01 26.0 793.0 TGTGCCAGCAGCGTAGGGAGCGGGAGGGACTACGAGCAGTACTTC CASSVGSGRDYEQYF TRBV9*01 TRBJ2-7*01 23.0 1357.0 CAVSGANFGNEKLTF_CASSVGSGRDYEQYF 1 5757 GAD2-TLK-8 GAD65 0.76 11 NEG 118 5639 3 HomoSapiens GAD2 TLKKMREI Naive T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-B*08:01 B2M MHCI -9469 chip0423_213099 8.88 12.1 Chip2 healthy_3 healthy TGTGCTGGGGCGGGTGGCTAGAGTAATCTCAGCATT CAGAGG*SNLSI TRAV27*01,TRAV35*01 TRAJ42*01 2.0 89.0 TGTGCCTGGAGTGTCGGGGGGAGCACTGAAGCTTTCTTT CAWSVGGSTEAFF TRBV30*01 TRBJ1-1*01 13.0 684.0 CAGAGG*SNLSI_CAWSVGGSTEAFF 1 3288 NP44-52 FLU 0.76 474 NP44-52 121 3167 7 InfluenzaA NP CTELKLSDY transitional T cells between effector and memory populations PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*01:01 B2M MHCI -9470 chip0423_792948 12.22 7.52 Chip2 T1D_4 T1D TGTGCCAGCAGCTTAGCGGTCGGAGAAGGGCCCCAGCATTTT CASSLAVGEGPQHF TRBV7-9*01 TRBJ1-5*01 23.0 624.0 _CASSLAVGEGPQHF 113 5933 BZLF1-190-197 EBV 0.81 2156 BZLF1-190-197 141 5792 10 EBV BZLF1 RAKFKQLL effector memory T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-B*08:01 B2M MHCI -9471 chip0423_788207 11.54 7.2 Chip2 healthy_3 healthy TGTGTGGCCCCCGCATCAGGAGGAAGCTACATACCTACCTTT CVAPASGGSYIPTF TRAV12-1*01 TRAJ6*01 17.0 1343.0 CVAPASGGSYIPTF_ 1 6581 EBV-LMP1-2 EBV 0.5 41 NEG 112 6469 10 EBV LMP1 YLQQNWWTL effector memory T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*02:01 B2M MHCI -9472 chip0423_142645 6.32 14.07 Chip2 healthy_3 healthy TGTGCAGGGCCCCTGGATGGAGGAAGCCAAGGAAATCTCATCTTT CAGPLDGGSQGNLIF TRAV25*01 TRAJ42*01 111.0 6119.0 CAGPLDGGSQGNLIF_ 1 5530 M1 FLU 0.61 1250 M1 124 5406 7 InfluenzaA M1 GILGFVFTL transitional T cells between effector and memory populations PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*02:01 B2M MHCI -9473 chip0423_761539 15.05 12.88 Chip2 T1D_5 T1D _ 6746 1827 BZLF1-190-197 EBV 0.6 2156 BZLF1-190-197 131 1696 12 EBV BZLF1 RAKFKQLL effector T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-B*08:01 B2M MHCI -9474 chip0423_121615 11.0 7.74 Chip2 healthy_3 healthy TGCGCCAGCAGTGATGACGGCATGAACACTGAAGCTTTCTTT CASSDDGMNTEAFF TRBV10-2*01 TRBJ1-1*01 11.0 407.0 _CASSDDGMNTEAFF 8 4448 EBV-LMP2A EBV 0.7 700 NEG 115 4333 6 EBV LMP2A CLGGLLTMV central memory T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*02:01 B2M MHCI -9475 chip0423_854881 7.34 12.25 Chip2 T1D_4 T1D TGTGCCAGCAGCTTGGGCCCACTACCCTACAATGAGCAGTTCTTC CASSLGPLPYNEQFF TRBV5-5*01 TRBJ2-1*01 14.0 768.0 _CASSLGPLPYNEQFF 2 5464 G6PC2-LTS-10 IGRP 0.88 59 G6PC2-LTS-10 114 5350 7 HomoSapiens G6PC2 LTSLTILQLY transitional T cells between effector and memory populations PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*01:01 B2M MHCI -9476 chip0423_369004 13.44 11.99 Chip2 T1D_4 T1D TGCATCGTCAGAGAAGGAGGTGGTGCTGGCGGTCTCACCGTT CIVREGGGAGGLTV TRAV26-1*01 TRAJ45*01 2.0 41.0 TGTGCCAGCAGCTTAGCGGTCGGAGAAGGGCCCCAGCATTTT CASSLAVGEGPQHF TRBV7-9*01 TRBJ1-5*01 81.0 2751.0 CIVREGGGAGGLTV_CASSLAVGEGPQHF 1 2614 BZLF1-190-197 EBV 0.77 2156 BZLF1-190-197 124 2490 12 EBV BZLF1 RAKFKQLL effector T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-B*08:01 B2M MHCI -9477 chip0423_867435 11.16 12.24 Chip2 T1D_5 T1D TGTGCCACCAGTGAAATGGGGGGATCTGAAGCTTTCTTT CATSEMGGSEAFF TRBV24-1*01 TRBJ1-1*01 30.0 1485.0 _CATSEMGGSEAFF 1 2657 BZLF1-190-197 EBV 0.62 2156 NEG 108 2549 11 EBV BZLF1 RAKFKQLL effector T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-B*08:01 B2M MHCI -9478 chip0423_754145 -3.59 10.95 Chip2 healthy_3 healthy TGTGCTCTGGGGTACTTTGGAAATGAGCAATTAACCTTT CALGYFGNEQLTF TRAV9-2*01 TRAJ48*01 1.0 10.0 TGTGCCCGCAGCTCGCCCGGGGGGGCTCAGCCCCAGCATTTT CARSSPGGAQPQHF TRBV7-9*01 TRBJ1-5*01 19.0 1007.0 CALGYFGNEQLTF_CARSSPGGAQPQHF 1 5513 NP140-148 FLU 0.65 102 NP140-148 112 5401 1 InfluenzaA NP HSNLNDATY Naive T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*01:01 B2M MHCI -9479 chip0423_601505 6.49 13.05 Chip2 healthy_3 healthy TGTGCCAACAGTGAAATGTGGGGAGCACCCCTCCACTTT CANSEMWGAPLHF TRBV2*01 TRBJ1-6*01 8.0 607.0 _CANSEMWGAPLHF 1 4758 NP44-52 FLU 0.72 474 NP44-52 116 4642 7 InfluenzaA NP CTELKLSDY transitional T cells between effector and memory populations PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*01:01 B2M MHCI -9480 chip0423_548189 7.31 13.95 Chip2 healthy_3 healthy TGTGCCGTGAACCCCAGCTTTCAGAAACTTGTATTT CAVNPSFQKLVF TRAV12-2*01 TRAJ8*01 16.0 1557.0 TGCGCCAGCAGCCAAGAGGGACAGGGTGCCGGGGAGCTGTTTTTT CASSQEGQGAGELFF TRBV4-1*01 TRBJ2-2*01 32.0 1420.0 CAVNPSFQKLVF_CASSQEGQGAGELFF 3 5001 NP44-52 FLU 0.76 474 NP44-52 124 4877 7 InfluenzaA NP CTELKLSDY transitional T cells between effector and memory populations PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*01:01 B2M MHCI -9481 chip0423_767654 -0.59 6.99 Chip2 T1D_5 T1D TGGGTAGAAAAAGTCTAACTTTGTAAATGAGAAATTAACCTTT WVEKV*L??tVNEKLTF TRAV5*01 TRAJ48*01 23.0 1441.0 TGTGCCAGCAGCCCCGGACTAGCGGGAAATAGCGAGCAGTACTTC CASSPGLAGNSEQYF TRBV7-2*01 TRBJ2-7*01 18.0 585.0 WVEKV*L??tVNEKLTF_CASSPGLAGNSEQYF 1 7668 NP140-148 FLU 0.82 102 NEG 116 7552 3 InfluenzaA NP HSNLNDATY Naive T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*01:01 B2M MHCI -9482 chip0423_663924 12.48 13.58 Chip2 T1D_4 T1D TGTGCCAGCAGCTTAGCGGTCGGAGAAGGGCCCCAGCATTTT CASSLAVGEGPQHF TRBV7-9*01 TRBJ1-5*01 32.0 1147.0 _CASSLAVGEGPQHF 113 1755 BZLF1-190-197 EBV 0.86 2156 NEG 113 1642 11 EBV BZLF1 RAKFKQLL effector T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-B*08:01 B2M MHCI -9483 chip0423_634244 -4.38 9.98 Chip2 T1D_6 T1D TGTGCCAGCAGCTTGGCCATAGGGACGCCCTATGGCTACACCTTC CASSLAIGTPYGYTF TRBV5-5*01 TRBJ1-2*01 37.0 1224.0 _CASSLAIGTPYGYTF 1 4624 NP140-148 FLU 0.47 102 NEG 118 4506 2 InfluenzaA NP HSNLNDATY Naive T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*01:01 B2M MHCI -9484 chip0423_629971 4.91 11.88 Chip2 healthy_4 healthy TGTGCTCTGATGCGATACAGCACCCTCACCTTT CALMRYSTLTF TRAV9-2*01 TRAJ11*01 16.0 1268.0 TGTGCCAGCAGTGAATTAGGGGATACGCAGTATTTT CASSELGDTQYF TRBV25-1*01 TRBJ2-3*01 71.0 4381.0 CALMRYSTLTF_CASSELGDTQYF 1 2856 M1 FLU 0.86 1250 NEG 119 2737 6 InfluenzaA M1 GILGFVFTL central memory T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*02:01 B2M MHCI -9485 chip0423_588474 5.21 11.4 Chip2 healthy_3 healthy TGTGCCAGCAGTGCAGCCGGGACGGAAAACATTCAGTACTTC CASSAAGTENIQYF TRBV28*01 TRBJ2-4*01 38.0 1824.0 _CASSAAGTENIQYF 1 6794 GAG-433-442 HIV 0.67 19 NEG 98 6696 6 HIV-1 GAG FLGKIWPSYK central memory T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*02:01 B2M MHCI -9486 chip0423_549699 12.77 10.93 Chip2 T1D_6 T1D TGCGCCAGCAGTCTCCATCCCTGGGGCTGCCTACAATGAGCAGTTCTTC CASSLHPW??gAAYNEQFF TRBV4-3*01 TRBJ2-1*01 32.0 2337.0 _CASSLHPW??gAAYNEQFF 16 3719 EBNA3A-193-201 EBV 0.8 1022 NEG 145 3574 9 EBV EBNA3A FLRGRAYGL effector memory T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-B*08:01 B2M MHCI -9487 chip0423_725367 11.7 8.09 Chip2 T1D_4 T1D TGTGCCTATGGTCAGAATTTTGTCTTT CAYGQNFVF TRAV8-3*01 TRAJ26*01 17.0 2021.0 TGTGCCAGCAGCGCAGACAGCGATTATGGCTACACCTTC CASSADSDYGYTF TRBV9*01 TRBJ1-2*01 55.0 3393.0 CAYGQNFVF_CASSADSDYGYTF 8 4521 EBV-LMP1-1 EBV 0.67 237 NEG 133 4388 10 EBV LMP1 YLLEMLWRL effector memory T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*02:01 B2M MHCI -9488 chip0423_445979 -3.0 9.76 Chip2 T1D_6 T1D _ 6746 6175 G6PC2-YLK-8 IGRP 0.73 27 NEG 118 6057 2 HomoSapiens G6PC2 YLKTNLFL Naive T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-B*08:01 B2M MHCI -9489 chip0423_738089 -4.04 11.81 Chip2 T1D_6 T1D TGTGCCGCTCAATCAGGGATGGATACGCAGTATTTT CAAQSGMDTQYF TRBV11-1*01 TRBJ2-3*01 53.0 3470.0 _CAAQSGMDTQYF 1 6203 PGT-178 PGT 0.64 1480 PGT-178 118 6085 1 HomoSapiens PGT LLAGIGTVPI Naive T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*02:01 B2M MHCI -9490 chip0423_605218 -4.37 10.46 Chip2 T1D_6 T1D TGTGCCGTGAGAGACATAGGCTTT CAVRDIGF TRAV3*01 TRAJ34*01,TRAJ43*01 2.0 108.0 CAVRDIGF_ 1 5022 Gag260-267 HIV 0.5 10 NEG 123 4899 2 HIV-1 Gag EIYKRWII Naive T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-B*08:01 B2M MHCI -9491 chip0423_440971 9.84 9.58 Chip2 T1D_5 T1D TGTGCAGAAGGGGAAACCTCCTACGACAAGGTGATATTT CAEGETSYDKVIF TRAV5*01 TRAJ50*01 1.0 100.0 TGTGCCAGCAGCCATACTAGCTCGCTCCCCGATACGCAGTATTTT CASSHTSSLPDTQYF TRBV7-9*01 TRBJ2-3*01 19.0 951.0 CAEGETSYDKVIF_CASSHTSSLPDTQYF 1 3014 BZLF1-190-197 EBV 0.53 2156 NEG 120 2894 9 EBV BZLF1 RAKFKQLL effector memory T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-B*08:01 B2M MHCI -9492 chip0423_764617 6.99 12.96 Chip2 T1D_6 T1D TGTGCTGTGGGGACCGTGGCTCTGGCCGCCCTGGCGCACTAATCTTT CAVGTVAct?GRPGALIF TRAV8-3*01 TRAJ37*01 11.0 222.0 TGTGCCAGCAGCTTAGCGGGTCGTGAGGGTACGCAGTATTTT CASSLAGREGTQYF TRBV11-3*01 TRBJ2-3*01 13.0 470.0 CAVGTVAct?GRPGALIF_CASSLAGREGTQYF 1 3899 NP380-388 FLU 0.41 60 NEG 136 3763 7 InfluenzaA NP ELRSRYWAI transitional T cells between effector and memory populations PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-B*08:01 B2M MHCI -9493 chip0423_538913 16.11 9.95 Chip2 healthy_4 healthy TGTGCCAGCCGCGCAACACGGGACTACTATGTCTACACCTTC CASRATRDYYVYTF TRBV3-1*01 TRBJ1-2*01 3.0 146.0 _CASRATRDYYVYTF 1 3074 EBV-BRLF1 EBV 0.85 1264 NEG 134 2940 12 EBV BRLF1 YVLDHLIVV effector T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*02:01 B2M MHCI -9494 chip0423_685292 6.7 13.66 Chip2 healthy_3 healthy TGTACTCGGAGATCATATTGTGGAGGTTACCAGAAAGGTACCTTT CTRRSYCGGYQKGTF TRAV19*01 TRAJ13*01 20.0 1426.0 TGTGCTCTGAGTTCTTATTCTGGGGGTTCCCCGGTTGTTCCCTTT CALSSYSGGSPVVPF TRAV19*01 TRAJ13*01 20.0 504.0 0.43 CTRRSYCGGYQKGTF_ 1 4234 NP44-52 FLU 1.0 474 NP44-52 128 4106 7 InfluenzaA NP CTELKLSDY transitional T cells between effector and memory populations PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*01:01 B2M MHCI -9495 chip0423_423744 8.83 12.59 Chip2 T1D_4 T1D TGCAGTGCCTCTCGTGACTCCTACGAGCAGTACTTC CSASRDSYEQYF TRBV20-1*01 TRBJ2-7*01 17.0 1605.0 _CSASRDSYEQYF 7 3658 EBV-LMP1-1 EBV 1.0 237 NEG 113 3545 7 EBV LMP1 YLLEMLWRL transitional T cells between effector and memory populations PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*02:01 B2M MHCI -9496 chip0423_746318 -1.64 7.73 Chip2 T1D_5 T1D _ 6746 7762 IAPP-LNH-9 IAPP 0.83 15 IAPP-LNH-9 121 7641 3 HomoSapiens IAPP LNHLKATPI Naive T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-B*08:01 B2M MHCI -9497 chip0423_539791 6.67 11.62 Chip2 T1D_6 T1D TGTGTGGTGAGCCGGGGACAGAGGCTCAACCCTGGGGAGGCTATACTTT CVVSRGQR??cSTLGRLYF TRAV10*01 TRAJ18*01 34.0 1988.0 TGTGCCAGCAGTCGGAACCCGCAATCGAAGTACTTC CASSRNPQSKYF TRBV28*01 TRBJ2-7*01 15.0 1121.0 CVVSRGQR??cSTLGRLYF_CASSRNPQSKYF 1 6115 ROTA-VP6 ROTA 0.49 47 ROTA-VP6 134 5981 7 RotavirusA VP6 TLLANVTAV transitional T cells between effector and memory populations PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*02:01 B2M MHCI -9498 chip0423_575539 11.4 8.23 Chip2 healthy_4 healthy TGCATCCTTCCCCTAGCTGGTGGTACTAGCTATGGAAAGCTGACATTT CILPLAGGTSYGKLTF TRAV26-2*01 TRAJ52*01 2.0 33.0 TGTGCCAGCAGCTCCGGACAGGCCTACGAGCAGTACTTC CASSSGQAYEQYF TRBV7-8*01 TRBJ2-7*01 3.0 123.0 CILPLAGGTSYGKLTF_CASSSGQAYEQYF 40 3230 EBNA3A-193-201 EBV 0.86 1022 NEG 128 3102 10 EBV EBNA3A FLRGRAYGL effector memory T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-B*08:01 B2M MHCI -9499 chip0423_571553 6.51 13.68 Chip2 healthy_3 healthy TGTGCTGTGGGTTCTCCTAATTATGGAGGAAGCCAAGGAAATCTCATCTTT CAVGSPNYGGSQGNLIF TRAV36/DV7*01 TRAJ42*01 190.0 3447.0 TATGCTAGTGGTCCGACTCATGGCTACACCTTC YASGPTHGYTF TRBV12-5*01 TRBJ1-2*01 1.0 130.0 CAVGSPNYGGSQGNLIF_YASGPTHGYTF 1 4035 NP44-52 FLU 0.54 474 NP44-52 118 3917 7 InfluenzaA NP CTELKLSDY transitional T cells between effector and memory populations PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*01:01 B2M MHCI -9500 chip0423_284213 9.87 9.64 Chip2 healthy_3 healthy CTGTGCCAGCAGCCCGATGTCAGCTACGCAGTATTTT LCQQPD??gSATQYF TRBV6-2*01,TRBV6-3*01 TRBJ2-3*01 10.0 992.0 _LCQQPD??gSATQYF 1 5150 EBV-BRLF1 EBV 0.6 1264 EBV-BRLF1 130 5020 8 EBV BRLF1 YVLDHLIVV effector memory T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*02:01 B2M MHCI -9501 chip0423_80083 12.48 6.69 Chip2 T1D_4 T1D _ 6746 3719 EBNA3A-193-201 EBV 0.75 1022 NEG 123 3596 10 EBV EBNA3A FLRGRAYGL effector memory T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-B*08:01 B2M MHCI -9502 chip0423_79350 -3.27 7.91 Chip2 healthy_3 healthy TGTGCCGTGAACAGACACGGTCAGAATTTTGTCTTT CAVNRHGQNFVF TRAV12-2*01 TRAJ26*01 23.0 2012.0 TGTGCTGTTTTTCTTCTGGTTCTGCAAGGCAACTGACCTTT CAVFLLgt?SARQLTF TRAV2*01 TRAJ22*01 31.0 1831.0 0.5 TGCGCCAGCAGTGAAGCAGGGGCCCAGGGAGGTGATGGCTACACCTTC CASSEAGAQGGDGYTF TRBV2*01 TRBJ1-2*01 1.0 105.0 CAVNRHGQNFVF_CASSEAGAQGGDGYTF 1 7251 PGT-178 PGT 0.92 1480 PGT-178 121 7130 2 HomoSapiens PGT LLAGIGTVPI Naive T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*02:01 B2M MHCI -9503 chip0423_271041 12.35 7.68 Chip2 T1D_5 T1D TGTGCCAGCAGTCCCCCGGGGAGAAAGGAAAAACTGTTTTTT CASSPPGRKEKLFF TRAV9-2*01 TRAJ5*01,TRAJ16*01 2.0 6.0 TGTGCCAGCAGTCCCCCGGGGAGAAATGAAAAACTGTTTTTT CASSPPGRNEKLFF TRBV12-3*01,TRBV12-4*01 TRBJ1-4*01 66.0 1773.0 CASSPPGRKEKLFF_CASSPPGRNEKLFF 1 2744 BZLF1-190-197 EBV 0.63 2156 NEG 155 2589 10 EBV BZLF1 RAKFKQLL effector memory T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-B*08:01 B2M MHCI -9504 chip0423_236643 5.57 11.91 Chip2 T1D_4 T1D TGTGCAGCGTTCTTTTGAGATGGGCAGAAGCCGCTCTTC CAAFF*DGQKPLF TRAV27*01 TRAJ16*01 3.0 77.0 TGTGCCAGCAGCGGGACTAGCGGGACGAACTCCTACGAGCAGTACTTC CASSGTSGTNSYEQYF TRBV2*01 TRBJ2-7*01 14.0 601.0 CAAFF*DGQKPLF_CASSGTSGTNSYEQYF 1 4565 NP225-233 FLU 0.46 23 NEG 113 4452 7 InfluenzaA NP ILKGKFQTA transitional T cells between effector and memory populations PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-B*08:01 B2M MHCI -9505 chip0423_822334 5.13 12.25 Chip2 healthy_4 healthy _ 6746 3239 M1 FLU 0.67 1250 NEG 103 3136 6 InfluenzaA M1 GILGFVFTL central memory T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*02:01 B2M MHCI -9506 chip0423_717148 -2.58 9.42 Chip2 T1D_6 T1D TGTGCAATGAGCCTATCTAACTTTGGAAATGAGAAATTACCCTTT CAMSLSNFGNEKLPF TRAV12-3*01 TRAJ48*01 4.0 66.0 TGCAGTGCTAGAGAGGGCCCGGGACAGGGACGCTGGGAGCAGTACTTC CSAREGPGQGRWEQYF TRBV20-1*01 TRBJ2-7*01 29.0 1161.0 CAMSLSNFGNEKLPF_CSAREGPGQGRWEQYF 1 7128 PGT-178 PGT 0.9 1480 PGT-178 138 6990 2 HomoSapiens PGT LLAGIGTVPI Naive T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*02:01 B2M MHCI -9507 chip0423_316943 10.24 11.22 Chip2 T1D_4 T1D _ 6746 4383 EBNA3A-158-166 EBV 0.86 444 NEG 126 4257 9 EBV EBNA3A QAKWRLQTL effector memory T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-B*08:01 B2M MHCI -9508 chip0423_470847 13.27 11.7 Chip2 T1D_5 T1D _ 6746 3236 BZLF1-190-197 EBV 0.61 2156 NEG 127 3109 9 EBV BZLF1 RAKFKQLL effector memory T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-B*08:01 B2M MHCI -9509 chip0423_425370 6.27 14.11 Chip2 T1D_6 T1D TGTGCCAGTAGTATCAGGTCCTCCTACGAGCAGTACTTC CASSIRSSYEQYF TRBV19*01 TRBJ2-7*01 14.0 604.0 _CASSIRSSYEQYF 36 4552 M1 FLU 0.56 1250 M1 129 4423 7 InfluenzaA M1 GILGFVFTL transitional T cells between effector and memory populations PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*02:01 B2M MHCI -9510 chip0423_318403 10.17 10.85 Chip2 healthy_4 healthy TGTGGAGCAGACTATGGCTCAGGAACCTACAAATACATCTTT CGADYGSGTYKYIF TRAV34*01 TRAJ40*01 6.0 219.0 TGCAGCGCCGGATCAGGTGAAGGCTACGAGCAGTACTTC CSAGSGEGYEQYF TRBV29-1*01 TRBJ2-7*01 76.0 6532.0 CGADYGSGTYKYIF_CSAGSGEGYEQYF 3 3506 BZLF1-190-197 EBV 0.91 2156 NEG 131 3375 9 EBV BZLF1 RAKFKQLL effector memory T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-B*08:01 B2M MHCI -9511 chip0423_70290 8.26 13.17 Chip2 T1D_5 T1D TGTGCCAGCAGCTTACTGGGGACGGTCGATAATTCACCCCTCCACTTT CASSLLGTVDNSPLHF TRBV7-9*01 TRBJ1-6*01 33.0 1048.0 _CASSLLGTVDNSPLHF 1 3042 BZLF1-190-197 EBV 0.91 2156 BZLF1-190-197 108 2934 7 EBV BZLF1 RAKFKQLL transitional T cells between effector and memory populations PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-B*08:01 B2M MHCI -9512 chip0423_36313 8.91 8.39 Chip2 healthy_5 healthy TGTGCTCTCGAGGAGGACAATGCCAGACTCATGTTT CALEEDNARLMF TRAV38-1*01 TRAJ31*01 3.0 185.0 TGTGCCAGCAGTTTACGTCTCTCCTACGAGCAGTACTTC CASSLRLSYEQYF TRBV27*01 TRBJ2-7*01 15.0 804.0 CALEEDNARLMF_CASSLRLSYEQYF 2 4030 BZLF1-190-197 EBV 0.56 2156 NEG 126 3904 8 EBV BZLF1 RAKFKQLL effector memory T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-B*08:01 B2M MHCI -9513 chip0423_77219 10.74 10.4 Chip2 T1D_5 T1D _ 6746 3778 BZLF1-190-197 EBV 0.78 2156 BZLF1-190-197 123 3655 9 EBV BZLF1 RAKFKQLL effector memory T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-B*08:01 B2M MHCI -9514 chip0423_607469 10.44 11.21 Chip2 T1D_4 T1D TGTGCCAGCAGTTTATACCCGACAGAGTGGTACTTC CASSLYPTEWYF TRBV27*01 TRBJ2-7*01 14.0 833.0 _CASSLYPTEWYF 2 3704 EBV-BLMF1 EBV 0.6 2531 NEG 129 3575 9 EBV BLMF1 GLCTLVAML effector memory T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*02:01 B2M MHCI -9515 chip0423_491606 13.27 7.76 Chip2 T1D_6 T1D TGCATCCTCCCACTTGCTGGTGATACTAGCTATGGAAAGCTGACATTT CILPLAGDTSYGKLTF TRAV26-2*01 TRAJ52*01 26.0 1283.0 CILPLAGDTSYGKLTF_ 2 3135 EBNA3A-193-201 EBV 0.79 1022 NEG 135 3000 10 EBV EBNA3A FLRGRAYGL effector memory T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-B*08:01 B2M MHCI -9516 chip0423_535016 11.77 7.02 Chip2 T1D_4 T1D TGTGTGGTGAGCGCATCAGGAGGAAGCTACATACCTACATTT CVVSASGGSYIPTF TRAV10*01 TRAJ6*01 34.0 1974.0 TGCGCCAGCAGCCCCACTGTGGGATTCGCCGGGGAGCTGTTTTTT CASSPTVGFAGELFF TRBV4-3*01 TRBJ2-2*01 15.0 605.0 CVVSASGGSYIPTF_CASSPTVGFAGELFF 2 5309 EBNA3A-193-201 EBV 0.8 1022 NEG 131 5178 10 EBV EBNA3A FLRGRAYGL effector memory T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-B*08:01 B2M MHCI -9517 chip0423_730591 6.31 14.35 Chip2 healthy_3 healthy CTGGCAGGAGGCGGGGGAGGAAGCCAAGGAAATCTCATCTTT LAGGGGGSQGNLIF TRAV27*01 TRAJ42*01 1.0 49.0 TGCAGCGCCGGCAGGGACGGGACTAATGAAAAACTGTTTTTT CSAGRDGTNEKLFF TRBV29-1*01 TRBJ1-4*01 1.0 83.0 LAGGGGGSQGNLIF_CSAGRDGTNEKLFF 1 6569 M1 FLU 0.43 1250 M1 114 6455 7 InfluenzaA M1 GILGFVFTL transitional T cells between effector and memory populations PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*02:01 B2M MHCI -9518 chip0423_370702 -3.92 12.04 Chip2 T1D_4 T1D TGTGCTATGCGGCCGCACTTTGGAACTGAGATATTAACCTTT CAMRPHFGTEILTF TRAV41*01 TRAJ48*01 7.0 195.0 TGTGCCAGCAGCTCCTATCGGGACCTAATGAACACTGAAGCTTTCTTT CASSSYRDLMNTEAFF TRBV7-2*01 TRBJ1-1*01 86.0 2146.0 CAMRPHFGTEILTF_CASSSYRDLMNTEAFF 1 4934 PGT-178 PGT 0.6 1480 NEG 131 4803 1 HomoSapiens PGT LLAGIGTVPI Naive T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*02:01 B2M MHCI -9519 chip0423_241871 5.1 11.97 Chip2 T1D_4 T1D _ 6746 5757 HCVNS3-1073-1081 HCV 0.67 36 NEG 104 5653 6 HCV NS3 CINGVCWTV central memory T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*02:01 B2M MHCI -9520 chip0423_610982 5.51 11.18 Chip2 T1D_6 T1D TGCATCCTCCCACTTGCTGGTGGTACTAGCTATGGAAAGCTGACATTT CILPLAGGTSYGKLTF TRAV26-2*01 TRAJ52*01 73.0 3521.0 TGTGCCAGCAGCTTGGGACAGGCCTACGAGCAGTACTTC CASSLGQAYEQYF TRBV7-8*01 TRBJ2-7*01 10.0 559.0 CILPLAGGTSYGKLTF_CASSLGQAYEQYF 308 8103 EBNA3A-193-201 EBV 0.81 1022 EBNA3A-193-201 119 7984 6 EBV EBNA3A FLRGRAYGL central memory T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-B*08:01 B2M MHCI -9521 chip0423_359701 -3.94 8.18 Chip2 T1D_4 T1D TGTGCCAGCAGCCAAGATCTCACAGGCTGGGACTATGGCTACACCTTC CASSQDLTGWDYGYTF TRBV4-2*01 TRBJ1-2*01 11.0 323.0 _CASSQDLTGWDYGYTF 1 4796 ZNT8-314-322 ZNT8 0.48 16 NEG 129 4667 2 HomoSapiens ZNT8 ILSAHVATA Naive T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*02:01 B2M MHCI -9522 chip0423_352657 11.33 12.86 Chip2 healthy_4 healthy _ 6746 2639 BZLF1-190-197 EBV 0.8 2156 NEG 126 2513 11 EBV BZLF1 RAKFKQLL effector T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-B*08:01 B2M MHCI -9523 chip0423_318727 11.01 12.78 Chip2 T1D_4 T1D _ 6746 3610 BZLF1-190-197 EBV 0.95 2156 BZLF1-190-197 121 3489 11 EBV BZLF1 RAKFKQLL effector T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-B*08:01 B2M MHCI -9524 chip0423_15769 -0.08 8.95 Chip2 T1D_6 T1D TGTGCCAGCAGCTTTGGCTACGAGCAGTACTTC CASSFGYEQYF TRBV7-9*01 TRBJ2-7*01 28.0 2511.0 _CASSFGYEQYF 1 8567 EBNA3A-193-201 EBV 0.63 1022 EBNA3A-193-201 118 8449 4 EBV EBNA3A FLRGRAYGL Naive T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-B*08:01 B2M MHCI -9525 chip0423_261318 -4.79 9.74 Chip2 healthy_3 healthy TGTGCCAGCAGCCAGTCACTAGCGGGAGGATGGCAGTACTTC CASSQSLAGGWQYF TRBV3-1*01 TRBJ2-7*01 16.0 1282.0 _CASSQSLAGGWQYF 1 5082 PGT-178 PGT 0.75 1480 PGT-178 110 4972 2 HomoSapiens PGT LLAGIGTVPI Naive T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*02:01 B2M MHCI -9526 chip0423_46063 -0.72 7.54 Chip2 healthy_3 healthy TGCGCCAGCAGCCAAGTACTCCGGGGAAAAGCTTTCTTT CASSQVLRGKAFF TRAV36/DV7*01 TRAJ40*01 2.0 6.0 TGCGCCAGCAGCCAAGTACTCCGGGGAAAAGCTTTCTTT CASSQVLRGKAFF TRBV4-3*01 TRBJ1-1*01 27.0 1167.0 CASSQVLRGKAFF_CASSQVLRGKAFF 1 9274 MART1-A28L MART1 0.44 84 MART1-A28L 115 9159 3 HomoSapiens MART1 ALGIGILTV Naive T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*02:01 B2M MHCI -9527 chip0423_799503 11.33 7.02 Chip2 T1D_4 T1D TGTGCTGTGCGTGGTGGAGACCGCGCCCCGCGGCTGGTATTT CAVRGGDRAPRLVF TRAV8-6*01 TRAJ54*01 9.0 294.0 TGTGCCAGCAGCCTAACGGTTCTGGCAGGTCCAAACACTGAAGCTTTCTTT CASSLTVLAGPNTEAFF TRBV7-3*01 TRBJ1-1*01 43.0 1551.0 CAVRGGDRAPRLVF_CASSLTVLAGPNTEAFF 1 5647 BZLF1-190-197 EBV 0.9 2156 BZLF1-190-197 134 5513 10 EBV BZLF1 RAKFKQLL effector memory T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-B*08:01 B2M MHCI -9528 chip0423_717131 -1.18 10.57 Chip2 T1D_6 T1D TGTGCAATGAGTAGATCTAACTTTGGAAATGAGAAATTAACCTTT CAMSRSNFGNEKLTF TRAV12-3*01 TRAJ48*01 63.0 1966.0 TGCGCCAGCAGCCAAGATGACTCGTTAAAAAACACTGAAGCTTTCTTT CASSQDDSLKNTEAFF TRBV4-1*01 TRBJ1-1*01 52.0 1342.0 CAMSRSNFGNEKLTF_CASSQDDSLKNTEAFF 1 5898 PGT-178 PGT 0.81 1480 PGT-178 132 5766 3 HomoSapiens PGT LLAGIGTVPI Naive T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*02:01 B2M MHCI -9529 chip0423_441005 7.08 10.61 Chip2 healthy_3 healthy TGTGCCAGTAGTCCACTCCTAGCGACCCAAGGCTACGAGCAGTACTTC CASSPLLATQGYEQYF TRBV19*01 TRBJ2-7*01 53.0 2068.0 _CASSPLLATQGYEQYF 3 7852 NP44-52 FLU 0.63 474 NP44-52 114 7738 7 InfluenzaA NP CTELKLSDY transitional T cells between effector and memory populations PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*01:01 B2M MHCI -9530 chip0423_340581 13.26 13.51 Chip2 T1D_5 T1D TGCGCCAGCAGCCTCAGTTCGGGGGGCCGTGGCGAGCAGTACTTC CASSLSSGGRGEQYF TRBV4-1*01 TRBJ2-7*01 2.0 151.0 _CASSLSSGGRGEQYF 11 1883 BZLF1-190-197 EBV 0.67 2156 NEG 151 1732 11 EBV BZLF1 RAKFKQLL effector T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-B*08:01 B2M MHCI -9531 chip0423_419201 6.19 13.47 Chip2 T1D_6 T1D TGTGCCAGTAGTATGAGGAGCACAGATACGCAGTATTTT CASSMRSTDTQYF TRBV19*01 TRBJ2-3*01 1.0 47.0 _CASSMRSTDTQYF 1 4145 M1 FLU 0.74 1250 M1 119 4026 7 InfluenzaA M1 GILGFVFTL transitional T cells between effector and memory populations PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*02:01 B2M MHCI -9532 chip0423_882902 10.04 10.36 Chip2 healthy_3 healthy TGTGCCGTTTACTCAGGAACCTACAAATACATCTTT CAVYSGTYKYIF TRAV8-1*01 TRAJ40*01 14.0 927.0 TGCGCCCGCCGTCTCCATCCATGGGGCTCCCTACCATGCGCAGTTCTTC CARRLHPW??gAPYHAQFF TRBV4-3*01 TRBJ2-1*01 11.0 1537.0 CAVYSGTYKYIF_CARRLHPW??gAPYHAQFF 1 4710 EBV-BRLF1 EBV 1.0 1264 NEG 110 4600 9 EBV BRLF1 YVLDHLIVV effector memory T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*02:01 B2M MHCI -9533 chip0423_626262 -3.77 10.2 Chip2 T1D_6 T1D TGTGCCAGCAGTTACGACAGGGGCGGTTATGGCTACACCTTC CASSYDRGGYGYTF TRBV6-5*01 TRBJ1-2*01 13.0 506.0 _CASSYDRGGYGYTF 1 4921 G6PC2-LTS-10 IGRP 0.5 59 NEG 135 4786 2 HomoSapiens G6PC2 LTSLTILQLY Naive T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*01:01 B2M MHCI -9534 chip0423_424394 -3.95 12.15 Chip2 T1D_6 T1D TGTGCAATGAGAGAGGGCACCAATGCAGGCAAATCAACCTTT CAMREGTNAGKSTF TRAV14/DV4*01 TRAJ27*01 57.0 3909.0 CAMREGTNAGKSTF_ 1 4520 G6PC2-NLI-9 IGRP 0.69 7 NEG 111 4409 1 HomoSapiens G6PC2 NLIFKWKSI Naive T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-B*08:01 B2M MHCI -9535 chip0423_44509 5.09 10.5 Chip2 T1D_6 T1D TGTGCCAGCAGTGAATCCCCGGCCCCCGGGAATGAAAAACTGTTTTTT CASSESPAPGNEKLFF TRBV6-1*01 TRBJ1-4*01 33.0 778.0 _CASSESPAPGNEKLFF 1 7033 IAPP-STN-9 IAPP 0.66 48 IAPP-STN-9 136 6897 6 HomoSapiens IAPP STNVGSNTY central memory T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*01:01 B2M MHCI -9536 chip0423_709043 7.23 13.83 Chip2 healthy_3 healthy TGTGTGGTGAACATGCCCCTTAAATACAACTTCAACAAATTTTACTTT CVVNMPLKYNFNKFYF TRAV12-1*01 TRAJ21*01 48.0 1278.0 TGTGCCAGCGGGACAGGGGCCGGGGAGCTGTTTTTT CASGTGAGELFF TRBV19*01 TRBJ2-2*01 21.0 1039.0 CVVNMPLKYNFNKFYF_CASGTGAGELFF 1 3418 M1 FLU 0.57 1250 NEG 118 3300 7 InfluenzaA M1 GILGFVFTL transitional T cells between effector and memory populations PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*02:01 B2M MHCI -9537 chip0423_773379 5.56 12.98 Chip2 healthy_3 healthy TGTGCCTTAGCGAATTATGGAGGAAGCCAAGAAAATCTCATCTTT CALANYGGSQENLIF TRAV24*01 TRAJ42*01 40.0 1355.0 CALANYGGSQENLIF_ 1 6885 NP44-52 FLU 0.88 474 NP44-52 120 6765 7 InfluenzaA NP CTELKLSDY transitional T cells between effector and memory populations PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*01:01 B2M MHCI -9538 chip0423_706548 -4.61 9.19 Chip2 healthy_3 healthy TGCAGTGCTAGAGATTGGACACCAAACAATGAGCAGTTCTTC CSARDWTPNNEQFF TRBV20-1*01 TRBJ2-1*01 21.0 1042.0 _CSARDWTPNNEQFF 1 5056 GP160-311-320 HIV 0.67 109 NEG 119 4937 2 HIV-1 GP160 RGPGRAFVTI Naive T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*02:01 B2M MHCI -9539 chip0423_201685 9.45 9.75 Chip2 healthy_4 healthy TGTGCCAGCAGGGCAGGCCGAGAACCCACCGGGGAGCTGTTTTTT CASRAGREPTGELFF TRBV3-1*01 TRBJ2-2*01 18.0 732.0 _CASRAGREPTGELFF 1 4910 BZLF1-190-197 EBV 0.83 2156 NEG 95 4815 8 EBV BZLF1 RAKFKQLL effector memory T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-B*08:01 B2M MHCI -9540 chip0423_492052 -0.56 10.53 Chip2 T1D_6 T1D TGTGCAGCAAAGGTCGGTGGGAACAACAGACTCGCTTTT CAAKVGGNNRLAF TRAV23/DV6*01 TRAJ7*01 15.0 1816.0 TGCGCCAGCAGCCAACGACAGGTCTCGAACACTGAAGCTTTCTTT CASSQRQVSNTEAFF TRBV4-1*01 TRBJ1-1*01 32.0 1202.0 CAAKVGGNNRLAF_CASSQRQVSNTEAFF 1 5466 gp160-586-593 HIV 0.47 30 NEG 124 5342 3 HIV-1 gp160 YLKDQQLL Naive T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-B*08:01 B2M MHCI -9541 chip0423_475316 8.66 11.6 Chip2 healthy_3 healthy TGCGCCAGCAGCCAAGATGGACTAGCGGCAACTAGCACAGATACGCAGTATTTT CASSQDGLAATSTDTQYF TRBV4-1*01 TRBJ2-3*01 17.0 771.0 _CASSQDGLAATSTDTQYF 6 4478 NP44-52 FLU 0.75 474 NEG 116 4362 9 InfluenzaA NP CTELKLSDY effector memory T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*01:01 B2M MHCI -9542 chip0423_423557 11.83 10.1 Chip2 T1D_6 T1D TCCATCCTCCCGCTTGCTGGTGGTCCTCGCTATGGTCCGCTGACACTT SILPLAGGPRYGPLTL TRAV26-2*01 TRAJ52*01 3.0 110.0 TGTGCCAGCAGCTTGGGACAGGCCTACGAGCAGTACTTC CASSLGQAYEQYF TRBV7-8*01 TRBJ2-7*01 13.0 807.0 SILPLAGGPRYGPLTL_CASSLGQAYEQYF 1 3940 EBNA3A-193-201 EBV 0.8 1022 NEG 137 3803 9 EBV EBNA3A FLRGRAYGL effector memory T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-B*08:01 B2M MHCI -9543 chip0423_155464 9.77 9.96 Chip2 healthy_4 healthy TGTGCCGCGGGGGAAAACCTCCTACGACAAGGTGATATTT CAAGENct??ccYDKVIF TRAV13-1*01 TRAJ50*01 14.0 1089.0 CAAGENct??ccYDKVIF_ 1 3691 BZLF1-190-197 EBV 0.78 2156 NEG 129 3562 9 EBV BZLF1 RAKFKQLL effector memory T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-B*08:01 B2M MHCI -9544 chip0423_850956 -0.35 4.45 Chip2 T1D_6 T1D TGCGCCAGCAGCCAAGGGCCGGGGTTCACAGATACGCAGTATTTT CASSQGPGFTDTQYF TRBV4-1*01 TRBJ2-3*01 25.0 1413.0 _CASSQGPGFTDTQYF 1 7619 INS-MAL-8 INS 0.58 38 INS-MAL-8 110 7509 5 HomoSapiens INS MALWMRLL natural killer-like T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-B*08:01 B2M MHCI -9545 chip0423_727644 4.92 11.98 Chip2 healthy_4 healthy _ 6746 3434 M1 FLU 1.0 1250 NEG 110 3324 6 InfluenzaA M1 GILGFVFTL central memory T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*02:01 B2M MHCI -9546 chip0423_516426 9.03 8.62 Chip2 T1D_5 T1D TGCGCCAGCAGCCTCCGTTCGGGGGGCCGTGGCGAGCAGTACTTC CASSLRSGGRGEQYF TRBV4-1*01 TRBJ2-7*01 1.0 13.0 _CASSLRSGGRGEQYF 1 5995 BZLF1-190-197 EBV 0.65 2156 BZLF1-190-197 135 5860 8 EBV BZLF1 RAKFKQLL effector memory T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-B*08:01 B2M MHCI -9547 chip0423_330258 11.8 10.39 Chip2 T1D_4 T1D TGTGCTGTGCGTGATGGAGAAGGAGCCCAGAAGCTGGTATTT CAVRDGEGAQKLVF TRAV8-6*01 TRAJ54*01 35.0 1208.0 TGTGCCAGCAGCTTAACGGTTCTGGCAGGTCCAAACACTGAAGCTTTCTTT CASSLTVLAGPNTEAFF TRBV7-3*01 TRBJ1-1*01 24.0 704.0 CAVRDGEGAQKLVF_CASSLTVLAGPNTEAFF 1 4684 BZLF1-190-197 EBV 0.88 2156 BZLF1-190-197 140 4544 9 EBV BZLF1 RAKFKQLL effector memory T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-B*08:01 B2M MHCI -9548 chip0423_651429 10.86 8.49 Chip2 T1D_5 T1D TGTGCAGAGATGGAAACCTCCTACGACAAGGTGATATTT CAEMETSYDKVIF TRAV13-2*01 TRAJ50*01 27.0 2007.0 TGTGCCAGCAGCTCCTTAAGCGGGGGGGCAGGAAATGAGCAGTTCTTC CASSSLSGGAGNEQFF TRBV7-9*01 TRBJ2-1*01 42.0 1277.0 CAEMETSYDKVIF_CASSSLSGGAGNEQFF 27 4662 BZLF1-190-197 EBV 0.83 2156 NEG 137 4525 10 EBV BZLF1 RAKFKQLL effector memory T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-B*08:01 B2M MHCI -9549 chip0423_440079 4.75 11.25 Chip2 healthy_4 healthy _ 6746 3732 M1 FLU 0.8 1250 NEG 116 3616 6 InfluenzaA M1 GILGFVFTL central memory T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*02:01 B2M MHCI -9550 chip0423_394246 -1.06 10.41 Chip2 T1D_6 T1D TGTGCTGTGAGCCCTAACGACTACAAGCTCAGCTTT CAVSPNDYKLSF TRAV8-4*01 TRAJ20*01 29.0 2122.0 CAVSPNDYKLSF_ 1 5742 M1 FLU 0.46 1250 M1 104 5638 3 InfluenzaA M1 GILGFVFTL Naive T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*02:01 B2M MHCI -9551 chip0423_347104 11.84 12.08 Chip2 T1D_4 T1D TGTGCCAGCAGCTCTACAGGGGCCGGCAATCAGCCCCAGCATTTT CASSSTGAGNQPQHF TRBV7-9*01 TRBJ1-5*01 18.0 708.0 _CASSSTGAGNQPQHF 1 3451 BZLF1-190-197 EBV 0.83 2156 NEG 132 3319 11 EBV BZLF1 RAKFKQLL effector T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-B*08:01 B2M MHCI -9552 chip0423_660605 12.65 7.16 Chip2 T1D_5 T1D TGTGCAATGAGAGAGGGGGAAAGCAGTGCTTCCAAGATAATCTTT CAMREGESSASKIIF TRAV14/DV4*01 TRAJ3*01 87.0 2294.0 TGCAGCGTTGGACAGGCTTATGGCTACACCTTC CSVGQAYGYTF TRBV29-1*01 TRBJ1-2*01 107.0 8034.0 CAMREGESSASKIIF_CSVGQAYGYTF 2 3999 BZLF1-190-197 EBV 0.83 2156 BZLF1-190-197 132 3867 10 EBV BZLF1 RAKFKQLL effector memory T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-B*08:01 B2M MHCI -9553 chip0423_372299 11.73 12.61 Chip2 T1D_4 T1D TGTGCCAGCAGCTTAGCGGTCGGAGAAGGGCCCCAGCATTTT CASSLAVGEGPQHF TRBV7-9*01 TRBJ1-5*01 21.0 804.0 _CASSLAVGEGPQHF 113 1800 BZLF1-190-197 EBV 0.65 2156 NEG 129 1671 11 EBV BZLF1 RAKFKQLL effector T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-B*08:01 B2M MHCI -9554 chip0423_351364 -3.63 9.4 Chip2 T1D_6 T1D TGTGCCAGCAGTTACTCACAGGGACAACCCCAGCATTTT CASSYSQGQPQHF TRBV6-5*01 TRBJ1-5*01 37.0 1872.0 _CASSYSQGQPQHF 1 7781 PGT-178 PGT 0.79 1480 PGT-178 114 7667 2 HomoSapiens PGT LLAGIGTVPI Naive T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*02:01 B2M MHCI -9555 chip0423_284470 6.64 12.58 Chip2 healthy_3 healthy TGTGCTGTGCAGGCCCCGGGACACCTGTAACCGGTTCTGTTTT CAVQAPG??cTCNRFCF TRAV20*01 TRAJ49*01 26.0 1389.0 CAVQAPG??cTCNRFCF_ 1 6907 NP44-52 FLU 0.8 474 NP44-52 104 6803 7 InfluenzaA NP CTELKLSDY transitional T cells between effector and memory populations PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*01:01 B2M MHCI -9556 chip0423_846726 -1.93 11.53 Chip2 T1D_4 T1D _ 6746 4589 PGT-178 PGT 0.84 1480 PGT-178 130 4459 3 HomoSapiens PGT LLAGIGTVPI Naive T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*02:01 B2M MHCI -9557 chip0423_659454 -3.6 10.89 Chip2 healthy_4 healthy TGTGCAATGAGCGGGTCTAACTTTGGCCCTGAGCCCTTCCCCTTT CAMSGSNFGPEPFPF TRAV12-3*01 TRAJ48*01 50.0 1886.0 TGTGCCAGCTCACCCCGACTAGCGGGGGACCAAGAGACCCAGTACTTC CASSPRLAGDQETQYF TRBV18*01 TRBJ2-5*01 14.0 1191.0 CAMSGSNFGPEPFPF_CASSPRLAGDQETQYF 1 4656 PGT-178 PGT 0.86 1480 PGT-178 103 4553 1 HomoSapiens PGT LLAGIGTVPI Naive T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*02:01 B2M MHCI -9558 chip0423_476243 -3.91 8.05 Chip2 T1D_6 T1D TGTGCCCCCCTCGGAAACCCCGACAAGCTCATCTTT CAPLGNPDKLIF TRAV25*01 TRAJ34*01 3.0 151.0 TGCGCCAGCAGGACAGGGGGTGACACCGGGGAGCTGTTTTTT CASRTGGDTGELFF TRBV10-2*01 TRBJ2-2*01 32.0 1330.0 CAPLGNPDKLIF_CASRTGGDTGELFF 1 6689 GAD2-VSA-10 GAD65 0.45 21 NEG 119 6570 2 HomoSapiens GAD2 VSATAGTTVY Naive T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*01:01 B2M MHCI -9559 chip0423_131692 16.24 10.98 Chip2 healthy_3 healthy _ 6746 2559 GAD65-114-122 GAD65 0.52 63 NEG 121 2438 12 HomoSapiens GAD65 VMNILLQYV effector T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*02:01 B2M MHCI -9560 chip0423_705614 -3.0 10.28 Chip2 T1D_6 T1D TGTGCAGCAAGTTGGAGTTATGGCGGAAGCCAAGGAAATCTCATCTTT CAASWSYGGSQGNLIF TRAV13-1*01 TRAJ42*01 2.0 24.0 TGTGCCAGCAGCCCCCCGGGACTAGCGGGATTCTTCTCCTACAATGAGCAGTTCTTC CASSPPGLAGFFSYNEQFF TRBV11-1*01 TRBJ2-1*01 3.0 108.0 CAASWSYGGSQGNLIF_CASSPPGLAGFFSYNEQFF 1 5384 POL-334-342 HIV 0.52 12 POL-334-342 115 5269 3 HIV-1 POL VIYQYMDDL Naive T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*02:01 B2M MHCI -9561 chip0423_655147 -1.85 7.1 Chip2 T1D_4 T1D TGTGCTGTGCAGGCCCCGGCCCAGGTGCTGGCGCCCTATCCTTG CAVQAPAc?aGAGALSL TRAV20*01 TRAJ37*01 9.0 450.0 TGTGCCACCCCCTCCCGCTGGACTATTCAATTAGTCACTGAAGCTTTCTTT CATPSRWTIQLVTEAFF TRBV19*01 TRBJ1-1*01 40.0 998.0 CAVQAPAc?aGAGALSL_CATPSRWTIQLVTEAFF 1 7296 INS-MAL-8 INS 0.7 38 NEG 137 7159 3 HomoSapiens INS MALWMRLL Naive T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-B*08:01 B2M MHCI -9562 chip0423_75407 -2.33 7.78 Chip2 healthy_4 healthy TGTGCTGTGAGGGCTAACGACTACAAGCTCAGCTTC CAVRANDYKLSF TRAV8-6*01 TRAJ20*01 26.0 2280.0 TGTGCCAGCAGCTTAGGCGAAAAACTGTTTTTT CASSLGEKLFF TRBV7-6*01 TRBJ1-4*01 14.0 726.0 CAVRANDYKLSF_CASSLGEKLFF 1 6140 IGRP-265-273 IGRP 0.85 34 NEG 119 6021 3 HomoSapiens IGRP VLFGLGFAI Naive T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*02:01 B2M MHCI -9563 chip0423_5121 -3.61 10.81 Chip2 T1D_6 T1D TGTGCAATGAGCATATCTAACTTTGGAAATGAGAAATTAACCTTT CAMSISNFGNEKLTF TRAV12-3*01 TRAJ48*01 169.0 5626.0 TGTGCCAGCAGTGGGGGACTTGGGTCGGGCTACACCTTC CASSGGLGSGYTF TRBV12-3*01,TRBV12-4*01 TRBJ1-2*01 12.0 781.0 CAMSISNFGNEKLTF_CASSGGLGSGYTF 1 4909 PGT-178 PGT 0.65 1480 PGT-178 119 4790 2 HomoSapiens PGT LLAGIGTVPI Naive T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*02:01 B2M MHCI -9564 chip0423_475586 11.19 9.74 Chip2 T1D_5 T1D TGTGCCAGCAGCCCTCTTGGGAGCAATGAAAAACTGTTTTTT CASSPLGSNEKLFF TRBV7-9*01 TRBJ1-4*01 12.0 453.0 _CASSPLGSNEKLFF 20 5434 BZLF1-190-197 EBV 1.0 2156 NEG 148 5286 9 EBV BZLF1 RAKFKQLL effector memory T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-B*08:01 B2M MHCI -9565 chip0423_342079 -5.04 9.68 Chip2 healthy_3 healthy TGTGCTCTGAGTGAGGCTGACAATGCCAGACTCATGTTT CALSEADNARLMF TRAV19*01 TRAJ31*01 2.0 267.0 TGTGCCAGCAGCTCCGGGACAACCACCACAGATACGCAGTATTTT CASSSGTTTTDTQYF TRBV7-8*01 TRBJ2-3*01 4.0 84.0 CALSEADNARLMF_CASSSGTTTTDTQYF 1 4408 IGRP-265-273 IGRP 0.54 34 NEG 124 4284 2 HomoSapiens IGRP VLFGLGFAI Naive T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*02:01 B2M MHCI -9566 chip0423_353724 -3.86 9.76 Chip2 healthy_3 healthy TGTGCCGTGGCGGGGGATAGCAACTATCAGTTAATCTGG CAVAGDSNYQLIW TRAV12-2*01 TRAJ33*01 7.0 308.0 TGTGCAGCAAGTACGGGAAGAACACAGGCTTTCAGAAACTTGTATTT CAASTGRac?TGFQKLVF TRAV13-1*01 TRAJ8*01 7.0 266.0 0.33 TGTGCCAGCAGTTATGCGCGCTACAATGAGCAGTTCTTC CASSYARYNEQFF TRBV6-5*01 TRBJ2-1*01 61.0 2767.0 CAVAGDSNYQLIW_CASSYARYNEQFF 1 4559 PGT-178 PGT 1.0 1480 PGT-178 112 4447 2 HomoSapiens PGT LLAGIGTVPI Naive T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*02:01 B2M MHCI -9567 chip0423_262879 11.41 9.49 Chip2 T1D_5 T1D TGTGCAGCAAGTGAAACCTCCTACGACAAGGTGATATTT CAASETSYDKVIF TRAV13-1*01 TRAJ50*01 18.0 1427.0 TGTGCCAGCACCGAATTGGGGAATCAAGAGACCCAGTACTTC CASTELGNQETQYF TRBV7-9*01 TRBJ2-5*01 65.0 3607.0 CAASETSYDKVIF_CASTELGNQETQYF 2 4645 BZLF1-190-197 EBV 0.71 2156 NEG 135 4510 9 EBV BZLF1 RAKFKQLL effector memory T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-B*08:01 B2M MHCI -9568 chip0423_834115 11.48 12.56 Chip2 T1D_5 T1D TGTGCAGCGGGGGAAACCTCCTACGACAAGGTGATATTT CAAGETSYDKVIF TRAV13-1*01 TRAJ50*01 23.0 1868.0 TGTGCCAGCAGCTTGTTAGGCAGTCAGAACACTGAAGCTTTCTTT CASSLLGSQNTEAFF TRBV7-9*01 TRBJ1-1*01 42.0 1507.0 CAAGETSYDKVIF_CASSLLGSQNTEAFF 11 2843 BZLF1-190-197 EBV 0.67 2156 NEG 123 2720 11 EBV BZLF1 RAKFKQLL effector T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-B*08:01 B2M MHCI -9569 chip0423_53934 6.1 13.4 Chip2 healthy_5 healthy TGTGCCAGCAGTTTCAGTGGCGGGCCTGGGGGCGGCTACACCTTC CASSFSGGPGGGYTF TRBV12-3*01,TRBV12-4*01 TRBJ1-2*01 31.0 1934.0 _CASSFSGGPGGGYTF 1 3573 BZLF1-190-197 EBV 0.64 2156 NEG 121 3452 7 EBV BZLF1 RAKFKQLL transitional T cells between effector and memory populations PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-B*08:01 B2M MHCI -9570 chip0423_34995 5.66 11.9 Chip2 healthy_3 healthy TGTGCCTTAGCGAATTATGGAGGAAGCCAAGGAAATCTCATCTTT CALANYGGSQGNLIF TRAV24*01 TRAJ42*01 53.0 1636.0 CALANYGGSQGNLIF_ 1 8376 NP44-52 FLU 0.71 474 NP44-52 132 8244 7 InfluenzaA NP CTELKLSDY transitional T cells between effector and memory populations PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*01:01 B2M MHCI -9571 chip0423_33093 -0.72 7.27 Chip2 T1D_6 T1D TGTGCCTGGAGGTCGGCAGGGACATCCTACGAGCAGTACTTC CAWRSAGTSYEQYF TRBV30*01 TRBJ2-7*01 28.0 1209.0 _CAWRSAGTSYEQYF 1 10195 MART1-A28L MART1 0.95 84 MART1-A28L 127 10068 3 HomoSapiens MART1 ALGIGILTV Naive T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*02:01 B2M MHCI -9572 chip0423_763754 10.47 12.31 Chip2 T1D_5 T1D TGTGCAGCATCGGAAACCTCCTACGACAAGGTGATATTT CAASETSYDKVIF TRAV13-1*01 TRAJ50*01 4.0 109.0 TGTGCCAGCAGCCCCTTGGGGGACAGCGCCTACGAGCAGTACTTC CASSPLGDSAYEQYF TRBV7-9*01 TRBJ2-7*01 26.0 1244.0 CAASETSYDKVIF_CASSPLGDSAYEQYF 4 3222 BZLF1-190-197 EBV 0.46 2156 NEG 131 3091 7 EBV BZLF1 RAKFKQLL transitional T cells between effector and memory populations PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-B*08:01 B2M MHCI -9573 chip0423_630312 11.21 10.41 Chip2 healthy_4 healthy TGTGCCAGCAGCTCCGGTCAGGCCTACGAGCAGTACCTC CASSSGQAYEQYL TRBV7-8*01 TRBJ2-7*01 5.0 130.0 _CASSSGQAYEQYL 1 3602 EBNA3A-193-201 EBV 0.75 1022 NEG 136 3466 9 EBV EBNA3A FLRGRAYGL effector memory T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-B*08:01 B2M MHCI -9574 chip0423_76018 13.16 6.78 Chip2 T1D_5 T1D TGTGCCAGCCAACTAGCGGGAGGCACCGGGGAGCTGTTTTTT CASQLAGGTGELFF TRBV24-1*01 TRBJ2-2*01 15.0 1124.0 _CASQLAGGTGELFF 69 4565 BZLF1-190-197 EBV 0.57 2156 NEG 116 4449 10 EBV BZLF1 RAKFKQLL effector memory T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-B*08:01 B2M MHCI -9575 chip0423_2891 -3.63 13.31 Chip2 healthy_3 healthy TGTGCGGAGGGGGACGACAAGATCATCTTT CAEGDDKIIF TRAV35*01 TRAJ30*01 15.0 1216.0 CAEGDDKIIF_ 1 3907 ZNT8-PTE-9 ZNT8 0.5 18 NEG 127 3780 1 HomoSapiens ZNT8 PTEKGANEY Naive T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*01:01 B2M MHCI -9576 chip0423_774563 -1.58 11.05 Chip2 T1D_4 T1D TGTGCTGTGGGTGGAGATGACAAGATCATCTTT CAVGGDDKIIF TRAV8-3*01 TRAJ30*01 1.0 23.0 TGCAGCGTGTGGGGTAATGAGCAGTTCTTC CSVWGNEQFF TRBV29-1*01 TRBJ2-1*01 36.0 4372.0 CAVGGDDKIIF_CSVWGNEQFF 1 4884 INS-6-16 INS 0.57 20 NEG 128 4756 3 HomoSapiens INS RLLPLLALLAL Naive T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*02:01 B2M MHCI -9577 chip0423_658444 10.04 7.4 Chip2 healthy_4 healthy TGCGCCAGCAGCCAAGCCCCGGGACAGCGCACCGGGGAGCTGTTTTTT CASSQAPGQRTGELFF TRBV4-1*01 TRBJ2-2*01 41.0 1757.0 _CASSQAPGQRTGELFF 9 6298 BZLF1-190-197 EBV 0.5 2156 NEG 114 6184 10 EBV BZLF1 RAKFKQLL effector memory T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-B*08:01 B2M MHCI -9578 chip0423_285981 -2.51 13.76 Chip2 T1D_4 T1D _ 6746 4670 NP44-52 FLU 0.93 474 NEG 120 4550 1 InfluenzaA NP CTELKLSDY Naive T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*01:01 B2M MHCI -9579 chip0423_121677 -3.72 8.97 Chip2 healthy_3 healthy TGTGCAATGAGCGTTGCTAACTTTGGAAATGAGAAATTCACCTTT CAMSVANFGNEKFTF TRAV12-3*01 TRAJ48*01 33.0 1761.0 TGTGCCAGCAGTTTCCCCCGCGCGGTCAGGACCTCCTACAATGAGCAGTTCTTC CASSFPRAVRTSYNEQFF TRBV28*01 TRBJ2-1*01 13.0 726.0 CAMSVANFGNEKFTF_CASSFPRAVRTSYNEQFF 1 6563 PGT-178 PGT 0.64 1480 PGT-178 117 6446 2 HomoSapiens PGT LLAGIGTVPI Naive T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*02:01 B2M MHCI -9580 chip0423_880043 -4.25 8.32 Chip2 T1D_6 T1D TGTGCTGTGTCCCATGCGTCCGGCGGTCGCTCCTTACCTACTTTT CAVSHASGGRSLPTF TRAV1-2*01 TRAJ6*01 21.0 1220.0 TGTGCCAGCAGCGTATCCTGGGGCGGCTCCTACGAGCAGTACTTC CASSVSWGGSYEQYF TRBV9*01 TRBJ2-7*01 21.0 1538.0 CAVSHASGGRSLPTF_CASSVSWGGSYEQYF 1 5458 NP413-421 FLU 0.71 16 NEG 112 5346 2 InfluenzaA NP ALKCKGFHV Naive T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-B*08:01 B2M MHCI -9581 chip0423_675131 -1.02 6.94 Chip2 healthy_4 healthy _ 6746 5633 PGT-178 PGT 1.0 1480 PGT-178 107 5526 3 HomoSapiens PGT LLAGIGTVPI Naive T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*02:01 B2M MHCI -9582 chip0423_311502 -2.88 9.28 Chip2 T1D_6 T1D _ 6746 4937 GFAP-LRL-8 GFAP 0.81 18 NEG 132 4805 2 HomoSapiens GFAP LRLRLDQL Naive T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-B*08:01 B2M MHCI -9583 chip0423_614911 -0.63 7.18 Chip2 healthy_3 healthy TGCAGTGCTAGTAGAACTTTT CSASRTF TRBV20-1*01 TRBJ2-3*01 17.0 2408.0 _CSASRTF 1 9390 PGT-178 PGT 0.84 1480 PGT-178 110 9280 3 HomoSapiens PGT LLAGIGTVPI Naive T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*02:01 B2M MHCI -9584 chip0423_419473 11.21 10.25 Chip2 T1D_5 T1D _ 6746 3811 BZLF1-190-197 EBV 0.58 2156 NEG 115 3696 9 EBV BZLF1 RAKFKQLL effector memory T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-B*08:01 B2M MHCI -9585 chip0423_38953 -2.42 7.27 Chip2 T1D_5 T1D TGTGCCAGCAGCTTTAACGTGGGAGCTTTCTTT CASSFNVGAFF TRAV36/DV7*01 TRAJ40*01 3.0 7.0 TGTGCCAGCAGCTTTAACGTGGAAGCTTTCTTT CASSFNVEAFF TRBV7-9*01 TRBJ1-1*01 55.0 3211.0 CASSFNVGAFF_CASSFNVEAFF 1 7873 ZNT8-YAK-9 ZNT8 0.84 59 ZNT8-YAK-9 129 7744 2 HomoSapiens ZNT8 YAKWKLCSA Naive T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-B*08:01 B2M MHCI -9586 chip0423_746279 13.83 11.68 Chip2 healthy_4 healthy TGTGCAGCACGTCTGGGTGCACACCTCCGACGACAAGGTGATATTT CAARLGAca??ccSDDKVIF TRAV13-1*01 TRAJ50*01 2.0 64.0 TGCGCCAGCAGCTGGGGACAGGGACCTACCTACGAGCAGTACTTC CASSWGQGPTYEQYF TRBV4-1*01 TRBJ2-7*01 1.0 24.0 CAARLGAca??ccSDDKVIF_CASSWGQGPTYEQYF 1 2016 BZLF1-190-197 EBV 0.7 2156 NEG 111 1905 12 EBV BZLF1 RAKFKQLL effector T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-B*08:01 B2M MHCI -9587 chip0423_262304 14.96 8.96 Chip2 T1D_6 T1D TGTGCCAGCAGCTTGGGACAGGCCTACGAGCAGTACTTC CASSLGQAYEQYF TRBV7-8*01 TRBJ2-7*01 6.0 491.0 _CASSLGQAYEQYF 175 3693 EBNA3A-193-201 EBV 0.73 1022 NEG 119 3574 12 EBV EBNA3A FLRGRAYGL effector T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-B*08:01 B2M MHCI -9588 chip0423_383598 8.21 11.7 Chip2 healthy_3 healthy TGTGCCGTGTCGTCCCTCTACCCGGCAGGAACTGCTCTGATCTTT CAVSSLYPAGTALIF TRAV12-3*01 TRAJ15*01 15.0 675.0 TGTGCCAGCAGTCACACAAAGGGTACCTACGAGCAGTACTTC CASSHTKGTYEQYF TRBV12-3*01,TRBV12-4*01 TRBJ2-7*01 17.0 1007.0 CAVSSLYPAGTALIF_CASSHTKGTYEQYF 1 4385 NP44-52 FLU 0.79 474 NEG 128 4257 7 InfluenzaA NP CTELKLSDY transitional T cells between effector and memory populations PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*01:01 B2M MHCI -9589 chip0423_824051 15.03 12.06 Chip2 healthy_3 healthy TGTGCCCTCACTGACAGCTGGGGGAAATTGCAGTTT CALTDSWGKLQF TRAV12-2*01 TRAJ24*01 6.0 515.0 TGTGCCAGCAGTGAATGGCTCGGACAGGGGTACGAGCAGTACTTC CASSEWLGQGYEQYF TRBV2*01 TRBJ2-7*01 3.0 295.0 CALTDSWGKLQF_CASSEWLGQGYEQYF 1 2159 GAD65-114-122 GAD65 0.52 63 NEG 117 2042 12 HomoSapiens GAD65 VMNILLQYV effector T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*02:01 B2M MHCI -9590 chip0423_734728 9.24 8.99 Chip2 healthy_4 healthy TGTGCCAGCCGTTAGACAGGGTCCTACGCGCCGTACTTC CASR*TGSYAPYF TRBV6-2*01,TRBV6-3*01 TRBJ2-7*01 15.0 911.0 _CASR*TGSYAPYF 1 4977 EBV-BRLF1 EBV 0.94 1264 EBV-BRLF1 136 4841 8 EBV BRLF1 YVLDHLIVV effector memory T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*02:01 B2M MHCI -9591 chip0423_827058 14.1 10.86 Chip2 T1D_5 T1D _ 6746 2450 G6PC2-TLH-9 IGRP 0.41 3 NEG 127 2323 12 HomoSapiens G6PC2 TLHRLTWSF effector T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-B*08:01 B2M MHCI -9592 chip0423_347293 -4.48 8.63 Chip2 healthy_3 healthy TGGGCTGTGGAGGATAACTACTCGCTAGGGTGGGAGCCAAGGTTATCTCATCTTT WAVEDNYSL??gGGSQGYLIF TRAV2*01 TRAJ42*01 14.0 278.0 WAVEDNYSL??gGGSQGYLIF_ 1 5203 PGT-178 PGT 0.64 1480 NEG 112 5091 2 HomoSapiens PGT LLAGIGTVPI Naive T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*02:01 B2M MHCI -9593 chip0423_81564 -0.3 4.69 Chip2 T1D_5 T1D TGTGCTCCGGACGCGCCCAACAGAGGCTCAACCCTGGGGAGGCTATACTTT CAPDAPNRGSTLGRLYF TRAV17*01 TRAJ18*01 82.0 1831.0 TGTGCCAGCAGCTTGGGACAGGCCTACGAGCAGTACTTC CASSLGQAYEQYF TRBV7-8*01 TRBJ2-7*01 1.0 29.0 CAPDAPNRGSTLGRLYF_CASSLGQAYEQYF 1 8422 GFAP-EGH-9 GFAP 0.62 4 GFAP-EGH-9 122 8300 5 HomoSapiens GFAP EGHLKRNIV natural killer-like T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-B*08:01 B2M MHCI -9594 chip0423_562842 7.44 11.64 Chip2 T1D_5 T1D TGTGCAGCGGCGGAAACCTCCTACGACAAGGTGATATTT CAAAETSYDKVIF TRAV13-1*01 TRAJ50*01 13.0 1443.0 TGTGCCAGCCAACTAGCGGGAGGCACCGGGGAGCTGTTTTTT CASQLAGGTGELFF TRBV24-1*01 TRBJ2-2*01 28.0 1532.0 CAAAETSYDKVIF_CASQLAGGTGELFF 131 4454 BZLF1-190-197 EBV 0.8 2156 NEG 119 4335 7 EBV BZLF1 RAKFKQLL transitional T cells between effector and memory populations PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-B*08:01 B2M MHCI -9595 chip0423_876417 -3.93 9.34 Chip2 T1D_6 T1D TGTGCAGCAAGCGAAGGCAATAACAATGACATGCGCTTT CAASEGNNNDMRF TRAV29/DV5*01 TRAJ43*01 27.0 1770.0 TGTGCCAGCAGTTACTTGGACGCAGGGATGGTCATGAACACTGAAGCTTTCTTT CASSYLDAGMVMNTEAFF TRBV6-2*01,TRBV6-3*01 TRBJ1-1*01 95.0 3101.0 CAASEGNNNDMRF_CASSYLDAGMVMNTEAFF 1 5256 GAD2-VSA-10 GAD65 0.47 21 NEG 112 5144 2 HomoSapiens GAD2 VSATAGTTVY Naive T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*01:01 B2M MHCI -9596 chip0423_316461 16.29 10.63 Chip2 healthy_3 healthy _ 6746 3834 GAD65-114-122 GAD65 0.46 63 NEG 131 3703 12 HomoSapiens GAD65 VMNILLQYV effector T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*02:01 B2M MHCI -9597 chip0423_247565 7.15 11.72 Chip2 T1D_6 T1D _ 6746 9573 NP380-388 FLU 0.66 60 NP380-388 122 9451 7 InfluenzaA NP ELRSRYWAI transitional T cells between effector and memory populations PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-B*08:01 B2M MHCI -9598 chip0423_139204 7.33 9.92 Chip2 healthy_5 healthy TGTGCCGCACTTAACCTAGCGGGGGGGACCGACAATGAGCAGTTCTTC CAALNLAGGTDNEQFF TRBV7-9*01 TRBJ2-1*01 1.0 45.0 _CAALNLAGGTDNEQFF 1 8204 BZLF1-190-197 EBV 0.67 2156 NEG 114 8090 8 EBV BZLF1 RAKFKQLL effector memory T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-B*08:01 B2M MHCI -9599 chip0423_571749 -3.74 8.9 Chip2 T1D_6 T1D TGTGCCGTGACCTCGTTTGCCAAACTCATGTTT CAVTSFAKLMF TRAV12-2*01 TRAJ31*01 2.0 21.0 TGTGCCAGCAGCCCAAATACAGGGCTTACCGGGGAGCTGTTTTTT CASSPNTGLTGELFF TRBV9*01 TRBJ2-2*01 5.0 258.0 CAVTSFAKLMF_CASSPNTGLTGELFF 1 7436 PGT-178 PGT 0.55 1480 PGT-178 122 7314 2 HomoSapiens PGT LLAGIGTVPI Naive T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*02:01 B2M MHCI -9600 chip0423_434501 -4.47 11.11 Chip2 healthy_3 healthy TGTGCCAGCAGTGATGCGACAGGGGACTACGAGCAGTACTTC CASSDATGDYEQYF TRBV2*01 TRBJ2-7*01 19.0 1037.0 _CASSDATGDYEQYF 1 4258 PREINS-2-10 INS 0.48 37 NEG 115 4143 1 HomoSapiens PREINS ALWMRLLPL Naive T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*02:01 B2M MHCI -9601 chip0423_742949 -3.3 8.99 Chip2 T1D_6 T1D TGTGCCGTGAACATGGACAGCACCCTCACCTTT CAVNMDSTLTF TRAV12-2*01 TRAJ11*01 39.0 4056.0 TGTGCCAGTAGTCCTTTGGACAGGGGGACCGGAGAGCTGTTTTTT CASSPLDRGTGELFF TRBV19*01 TRBJ2-2*01 59.0 3233.0 CAVNMDSTLTF_CASSPLDRGTGELFF 1 7057 PGT-178 PGT 0.78 1480 PGT-178 135 6922 2 HomoSapiens PGT LLAGIGTVPI Naive T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*02:01 B2M MHCI -9602 chip0423_656033 11.03 12.54 Chip2 T1D_4 T1D TTTGCCGTGCCGGACACCGACAAGCTCCTCTTT FAVPDTDKLLF TRAV8-1*01 TRAJ34*01 8.0 767.0 TGTGCCAGTACACCTACGCCCCCTAGTTTCCAAGAGACCCAGTACTTC CASTPTPPSFQETQYF TRBV6-1*01 TRBJ2-5*01 87.0 2643.0 FAVPDTDKLLF_CASTPTPPSFQETQYF 1 3312 EBV-BRLF1 EBV 0.87 1264 NEG 126 3186 11 EBV BRLF1 YVLDHLIVV effector T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*02:01 B2M MHCI -9603 chip0423_420140 -3.45 8.14 Chip2 healthy_3 healthy TGTGCAATGAGCCGATCTAACTTTGGAAATGAGAAATTAACCTTT CAMSRSNFGNEKLTF TRAV12-3*01 TRAJ48*01 107.0 3691.0 CAMSRSNFGNEKLTF_ 5 6787 PGT-178 PGT 0.53 1480 PGT-178 114 6673 2 HomoSapiens PGT LLAGIGTVPI Naive T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*02:01 B2M MHCI -9604 chip0423_864548 -3.54 13.52 Chip2 T1D_4 T1D TGTGCAGCCAGTCCGATTCCGGAGGTGGCCCTGCCGTCCTCACCTTT CAASPIPga?GGPAVLTF TRAV13-1*01 TRAJ45*01 3.0 238.0 CAASPIPga?GGPAVLTF_ 1 4815 PGT-178 PGT 0.62 1480 PGT-178 138 4677 1 HomoSapiens PGT LLAGIGTVPI Naive T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*02:01 B2M MHCI -9605 chip0423_466980 9.41 10.95 Chip2 healthy_4 healthy TGTGCCAGCAGGGTAGGCCGAGAACCCACCGGGGAGCTGTTTTTT CASRVGREPTGELFF TRBV3-1*01 TRBJ2-2*01 74.0 2578.0 _CASRVGREPTGELFF 13 5878 BZLF1-190-197 EBV 0.91 2156 BZLF1-190-197 120 5758 9 EBV BZLF1 RAKFKQLL effector memory T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-B*08:01 B2M MHCI -9606 chip0423_327558 0.55 8.68 Chip2 T1D_6 T1D TGCAGTGCTAGAGTTCAGGGCGAGGGTCAGCCCCAGCATTTT CSARVQGEGQPQHF TRBV20-1*01 TRBJ1-5*01 16.0 712.0 _CSARVQGEGQPQHF 1 6540 NP140-148 FLU 0.42 102 NEG 128 6412 4 InfluenzaA NP HSNLNDATY Naive T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*01:01 B2M MHCI -9607 chip0423_229920 11.09 7.52 Chip2 T1D_5 T1D TGTGCTTTCCTTTCTGGTTCTGCAAGGCAACTGACCTTT CAFLSGSARQLTF TRAV41*01 TRAJ22*01 28.0 2031.0 TGTGCCAGCAGCAGCCTAGGGGACAGGGACCAGACGGCTTTCTTT CASSSLGDRDQTAFF TRBV7-9*01 TRBJ1-1*01 18.0 619.0 CAFLSGSARQLTF_CASSSLGDRDQTAFF 1 4604 BZLF1-190-197 EBV 1.0 2156 NEG 118 4486 10 EBV BZLF1 RAKFKQLL effector memory T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-B*08:01 B2M MHCI -9608 chip0423_693973 9.27 9.03 Chip2 T1D_4 T1D _ 6746 6817 EBV-LMP2-FLY EBV 0.8 355 NEG 107 6710 8 EBV LMP2 FLYALALLL effector memory T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*02:01 B2M MHCI -9609 chip0423_628289 -3.26 10.17 Chip2 T1D_4 T1D TGTGCCGGTAACACCGGTAACCAGTTCTATTTT CAGNTGNQFYF TRAV12-2*01 TRAJ49*01 15.0 2018.0 TGTGCCAGCAGTCCAGGGTACGAGCAGTACTTC CASSPGYEQYF TRBV6-1*01 TRBJ2-7*01 8.0 357.0 CAGNTGNQFYF_CASSPGYEQYF 1 5178 HCVNS4B-1807-1816 HCV 0.44 74 NEG 112 5066 2 HCV NS4B LLFNILGGWV Naive T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*02:01 B2M MHCI -9610 chip0423_260729 6.12 11.5 Chip2 healthy_3 healthy TGTGCCAGCAGTAGGGTTAGGGGCACAGATACGCAGTATTTT CASSRVRGTDTQYF TRBV28*01 TRBJ2-3*01 23.0 1000.0 _CASSRVRGTDTQYF 1 5155 PGT-178 PGT 0.61 1480 NEG 130 5025 7 HomoSapiens PGT LLAGIGTVPI transitional T cells between effector and memory populations PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*02:01 B2M MHCI -9611 chip0423_221547 -1.39 6.84 Chip2 healthy_4 healthy TGTGTGGTGACCCGCTATCACTTTGGAAATGAGAAATTAACCTTT CVVTRYHFGNEKLTF TRAV12-1*01 TRAJ48*01 25.0 729.0 TGTGCCAGCAGCTTTAGGCCCGTTGCTAATTCACCCCTCCACTTT CASSFRPVANSPLHF TRBV5-4*01 TRBJ1-6*01 3.0 44.0 CVVTRYHFGNEKLTF_CASSFRPVANSPLHF 1 6653 PGT-178 PGT 0.62 1480 NEG 115 6538 3 HomoSapiens PGT LLAGIGTVPI Naive T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*02:01 B2M MHCI -9612 chip0423_110818 9.48 8.88 Chip2 healthy_4 healthy TGTGCCAGCAGCACGACCCGCGCAGGGACTTGGCCCTCTCCACTTT CASSTTRgc??agGLGPLHF TRBV7-9*01 TRBJ1-6*01 22.0 858.0 _CASSTTRgc??agGLGPLHF 1 4670 BZLF1-190-197 EBV 1.0 2156 NEG 135 4535 8 EBV BZLF1 RAKFKQLL effector memory T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-B*08:01 B2M MHCI -9613 chip0423_745525 12.07 10.38 Chip2 T1D_4 T1D TGTGCCAGCAGCCAAGTCAACAACCCGGGGGATGGCTACACCTTC CASSQVNNPGDGYTF TRBV14*01 TRBJ1-2*01 10.0 517.0 _CASSQVNNPGDGYTF 94 6288 EBNA3A-158-166 EBV 0.77 444 EBNA3A-158-166 120 6168 9 EBV EBNA3A QAKWRLQTL effector memory T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-B*08:01 B2M MHCI -9614 chip0423_636683 9.62 8.97 Chip2 T1D_5 T1D TGTGCCAGCAGCCCTCTTGGGAGCAATGAAAAACTGTTTTTT CASSPLGSNEKLFF TRAV36/DV7*01 TRAJ5*01 2.0 12.0 TGTGCCAGCAGCCCTCTTGGGAGCAATGAAAAACTGTTTTTT CASSPLGSNEKLFF TRBV7-9*01 TRBJ1-4*01 44.0 1610.0 CASSPLGSNEKLFF_CASSPLGSNEKLFF 4 4952 BZLF1-190-197 EBV 0.93 2156 NEG 132 4820 8 EBV BZLF1 RAKFKQLL effector memory T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-B*08:01 B2M MHCI -9615 chip0423_202733 8.31 9.14 Chip2 healthy_4 healthy TGTGCCAGCAGGGTAGGCCGAGAACCCACCGGGGAGCTGTTTTTT CASRVGREPTGELFF TRBV3-1*01 TRBJ2-2*01 6.0 175.0 _CASRVGREPTGELFF 13 6226 BZLF1-190-197 EBV 0.87 2156 NEG 125 6101 8 EBV BZLF1 RAKFKQLL effector memory T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-B*08:01 B2M MHCI -9616 chip0423_194468 -3.8 8.71 Chip2 T1D_4 T1D TGTGCAATGAGCGGATCTAACTTTGGAAATGAGAAATTAACCTTT CAMSGSNFGNEKLTF TRAV12-3*01 TRAJ48*01 61.0 1875.0 TGTGCCAGCAGCCAAGACCCTGGACTAGCGGAGCCAGATACGCAGTATTTT CASSQDPGLAEPDTQYF TRBV3-1*01 TRBJ2-3*01 37.0 1181.0 CAMSGSNFGNEKLTF_CASSQDPGLAEPDTQYF 1 5104 PGT-178 PGT 0.74 1480 PGT-178 135 4969 2 HomoSapiens PGT LLAGIGTVPI Naive T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*02:01 B2M MHCI -9617 chip0423_702606 9.45 9.42 Chip2 healthy_5 healthy _ 6746 2613 BZLF1-190-197 EBV 0.88 2156 NEG 112 2501 8 EBV BZLF1 RAKFKQLL effector memory T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-B*08:01 B2M MHCI -9618 chip0423_682566 7.65 11.7 Chip2 healthy_3 healthy TGTGCTGTTCTCCCCTCTAACGACTACAAGCTCAGCTTT CAVLPSNDYKLSF TRAV12-3*01 TRAJ20*01 2.0 190.0 TGTGCCAGTATCGGAAAGACCACTAGCACAGATACGCAGTATTTT CASIGKTTSTDTQYF TRBV19*01 TRBJ2-3*01 55.0 1770.0 CAVLPSNDYKLSF_CASIGKTTSTDTQYF 3 5893 NP44-52 FLU 0.79 474 NP44-52 130 5763 7 InfluenzaA NP CTELKLSDY transitional T cells between effector and memory populations PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*01:01 B2M MHCI -9619 chip0423_449386 -4.23 10.15 Chip2 T1D_6 T1D TGTGCCAGCAGCCCCGTGAGGGAAGAGACCCAGTACTTC CASSPVREETQYF TRBV7-6*01 TRBJ2-5*01 17.0 830.0 _CASSPVREETQYF 1 5541 Pol173-181 HIV 0.61 8 Pol173-181 111 5430 2 HIV-1 Pol GPKVKQWPL Naive T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-B*08:01 B2M MHCI -9620 chip0423_652458 8.85 8.92 Chip2 healthy_4 healthy TGTGCCAGCAGCCAGACATTTCCGAACACCGGGGAGCTGTTTTTT CASSQTFPNTGELFF TRBV3-1*01 TRBJ2-2*01 27.0 1576.0 _CASSQTFPNTGELFF 12 6411 BZLF1-190-197 EBV 0.75 2156 BZLF1-190-197 124 6287 8 EBV BZLF1 RAKFKQLL effector memory T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-B*08:01 B2M MHCI -9621 chip0423_35259 7.3 12.64 Chip2 healthy_3 healthy TGTGCCAGTAGTATTAGAAGCGGCTATGAGCAGTTCTTC CASSIRSGYEQFF TRBV19*01 TRBJ2-1*01 22.0 1322.0 _CASSIRSGYEQFF 2 4941 M1 FLU 0.79 1250 M1 112 4829 7 InfluenzaA M1 GILGFVFTL transitional T cells between effector and memory populations PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*02:01 B2M MHCI -9622 chip0423_858052 -1.1 9.34 Chip2 T1D_5 T1D TGTGCCTTGCGGGCCCTTGTGGGGGCAAACAACCTCTTCTTT CALRALVGANNLFF TRAV14/DV4*01 TRAJ36*01 3.0 106.0 CALRALVGANNLFF_ 1 7766 GAD2-LMH-8 GAD65 0.56 1 GAD2-LMH-8 128 7638 3 HomoSapiens GAD2 LMHCQTTL Naive T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-B*08:01 B2M MHCI -9623 chip0423_729727 9.81 7.84 Chip2 healthy_4 healthy _ 6746 4192 BZLF1-190-197 EBV 0.67 2156 NEG 111 4081 8 EBV BZLF1 RAKFKQLL effector memory T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-B*08:01 B2M MHCI -9624 chip0423_718258 -3.38 9.91 Chip2 T1D_5 T1D TGTGCCAGCAGTTACTCCGGGACCGGCGTCCCCTATGGCTACACCTTC CASSYSGTGVPYGYTF TRBV6-5*01 TRBJ1-2*01 14.0 473.0 _CASSYSGTGVPYGYTF 1 5455 IAPP-STN-9 IAPP 0.83 48 IAPP-STN-9 109 5346 2 HomoSapiens IAPP STNVGSNTY Naive T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*01:01 B2M MHCI -9625 chip0423_658538 15.34 10.85 Chip2 healthy_3 healthy TGTGCCCCTGCATCAGGAGGAAGCTACATACCTACATTT CAPASGGSYIPTF TRAV24*01 TRAJ6*01 20.0 1618.0 TGTGCCAGCTGCCGGGGCGGGACCTACGAGCAGTACTTC CASCRGGTYEQYF TRBV10-3*01 TRBJ2-7*01 5.0 449.0 CAPASGGSYIPTF_CASCRGGTYEQYF 1 4133 NP44-52 FLU 0.78 474 NP44-52 139 3994 12 InfluenzaA NP CTELKLSDY effector T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*01:01 B2M MHCI -9626 chip0423_161674 11.64 8.44 Chip2 healthy_4 healthy TGTGCCAGCAGCTTAATTGTTAGCGGGGGGGCAAATGAGCAGTTCTTC CASSLIVSGGANEQFF TRBV7-3*01 TRBJ2-1*01 10.0 468.0 _CASSLIVSGGANEQFF 5 2875 BZLF1-190-197 EBV 0.88 2156 NEG 124 2751 10 EBV BZLF1 RAKFKQLL effector memory T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-B*08:01 B2M MHCI -9627 chip0423_840761 6.13 13.95 Chip2 healthy_3 healthy TGTGCTGGCGGGGGGTCGCGGGCGGAGGAAACAAACTCACCTTT CAGGGSRg?cGGNKLTF TRAV27*01 TRAJ10*01 36.0 1200.0 TGCAGCGTTGAAGGGGAGGGACAGATTTACAACGAGCAGTTCTTC CSVEGEGQIYNEQFF TRBV29-1*01 TRBJ2-1*01 11.0 510.0 CAGGGSRg?cGGNKLTF_CSVEGEGQIYNEQFF 1 7647 NP44-52 FLU 0.66 474 NP44-52 113 7534 7 InfluenzaA NP CTELKLSDY transitional T cells between effector and memory populations PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*01:01 B2M MHCI -9628 chip0423_390942 -2.49 15.37 Chip2 T1D_4 T1D TGCAGCGTTGCCGGTAACACTGAAGCTTTCTTT CSVAGNTEAFF TRBV29-1*01 TRBJ1-1*01 1.0 45.0 _CSVAGNTEAFF 2 1690 PGT-178 PGT 0.62 1480 NEG 113 1577 1 HomoSapiens PGT LLAGIGTVPI Naive T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*02:01 B2M MHCI -9629 chip0423_81065 10.49 10.18 Chip2 T1D_5 T1D TGTGCAGAGATGGAAACCTCCTACGACAAGGTGATATTT CAEMETSYDKVIF TRAV13-2*01 TRAJ50*01 8.0 806.0 TGTGCCAGCACCCACCCCCAGGATGTGAACACCGGGGAGCTGTTTTTT CASTHPQDVNTGELFF TRBV7-9*01 TRBJ2-2*01 20.0 961.0 CAEMETSYDKVIF_CASTHPQDVNTGELFF 8 4052 BZLF1-190-197 EBV 0.58 2156 NEG 133 3919 9 EBV BZLF1 RAKFKQLL effector memory T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-B*08:01 B2M MHCI -9630 chip0423_752056 11.07 10.47 Chip2 T1D_5 T1D TGTGCCAGCAGCCCGCTCGGGGAGGCCAAAAACATTCAGTACTTC CASSPLGEAKNIQYF TRBV7-9*01 TRBJ2-4*01 2.0 78.0 _CASSPLGEAKNIQYF 10 4285 BZLF1-190-197 EBV 0.42 2156 NEG 131 4154 9 EBV BZLF1 RAKFKQLL effector memory T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-B*08:01 B2M MHCI -9631 chip0423_569888 5.8 13.6 Chip2 healthy_3 healthy TGTGCTGTGAGAAGGCACCAGGCAGGAACTGCTCTGATCTTT CAVRRHQAGTALIF TRAV3*01 TRAJ15*01 48.0 2255.0 TGTGCCAGCAGCTTTGGGGTTGGGGATACAGAAGAGACCCAGTACTTC CASSFGVGDTEETQYF TRBV5-4*01 TRBJ2-5*01 26.0 1317.0 CAVRRHQAGTALIF_CASSFGVGDTEETQYF 3 4241 NP44-52 FLU 0.89 474 NP44-52 122 4119 7 InfluenzaA NP CTELKLSDY transitional T cells between effector and memory populations PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*01:01 B2M MHCI -9632 chip0423_420547 4.95 10.98 Chip2 healthy_3 healthy _ 6746 5647 IAPP-STN-9 IAPP 0.93 48 NEG 105 5542 6 HomoSapiens IAPP STNVGSNTY central memory T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*01:01 B2M MHCI -9633 chip0423_485243 9.47 8.28 Chip2 T1D_5 T1D TGTGCCAGCAGCTTAATTGGCCAGCCCCAAGAGACCCAGTACTTC CASSLIGQPQETQYF TRBV7-9*01 TRBJ2-5*01 54.0 2457.0 _CASSLIGQPQETQYF 1 5487 BZLF1-190-197 EBV 1.0 2156 NEG 130 5357 8 EBV BZLF1 RAKFKQLL effector memory T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-B*08:01 B2M MHCI -9634 chip0423_395281 5.87 13.22 Chip2 healthy_3 healthy TGTGCCAGCAGTGAAATGTGGGGAGCACCCCTCCACTTT CASSEMWGAPLHF TRBV2*01 TRBJ1-6*01 13.0 713.0 _CASSEMWGAPLHF 14 7289 NP44-52 FLU 0.89 474 NP44-52 118 7171 7 InfluenzaA NP CTELKLSDY transitional T cells between effector and memory populations PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*01:01 B2M MHCI -9635 chip0423_183058 15.49 11.49 Chip2 T1D_5 T1D TGTGCAGCAACGGAAACCTCCTACGACAAGGTGATATTT CAATETSYDKVIF TRAV13-1*01 TRAJ50*01 22.0 1779.0 TGTGCCAGCAGTCCCCCGGGGAGAAATGAAAAACTGTTTTTT CASSPPGRNEKLFF TRBV12-3*01,TRBV12-4*01 TRBJ1-4*01 33.0 1261.0 CAATETSYDKVIF_CASSPPGRNEKLFF 34 2358 BZLF1-190-197 EBV 0.41 2156 NEG 126 2232 12 EBV BZLF1 RAKFKQLL effector T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-B*08:01 B2M MHCI -9636 chip0423_772385 12.09 13.12 Chip2 T1D_5 T1D _ 6746 2209 BZLF1-190-197 EBV 1.0 2156 NEG 128 2081 11 EBV BZLF1 RAKFKQLL effector T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-B*08:01 B2M MHCI -9637 chip0423_755712 10.94 9.46 Chip2 healthy_3 healthy TGTGCCAGCAGCCAGATGTCAGATACGCAGTATTTT CASSQMSDTQYF TRBV6-2*01,TRBV6-3*01 TRBJ2-3*01 37.0 2046.0 _CASSQMSDTQYF 6 4410 EBV-BRLF1 EBV 0.57 1264 NEG 102 4308 9 EBV BRLF1 YVLDHLIVV effector memory T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*02:01 B2M MHCI -9638 chip0423_668954 8.16 8.5 Chip2 tet_neg TGTGCAATGAGCGAGGACGGCTTT CAMSEDGF TRAV12-3*01 TRAJ27*01 1.0 173.0 CAMSEDGF_ 2 8053 BZLF1-190-197 EBV 0.56 2156 NEG 122 7931 8 EBV BZLF1 RAKFKQLL effector memory T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-B*08:01 B2M MHCI -9639 chip0423_680177 14.89 12.88 Chip2 T1D_4 T1D TGTGCCAGCAGCTTAGCGGTCGGAGAAGGGCCCCAGCATTTT CASSLAVGEGPQHF TRBV7-9*01 TRBJ1-5*01 100.0 3510.0 _CASSLAVGEGPQHF 113 2072 BZLF1-190-197 EBV 1.0 2156 NEG 132 1940 12 EBV BZLF1 RAKFKQLL effector T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-B*08:01 B2M MHCI -9640 chip0423_511349 4.91 11.76 Chip2 healthy_4 healthy TGCAGTGCCTGGACTAGCGACTCCTACAATGAGCAGTTCTTC CSAWTSDSYNEQFF TRBV20-1*01 TRBJ2-1*01 27.0 2264.0 _CSAWTSDSYNEQFF 5 2855 M1 FLU 0.92 1250 NEG 111 2744 6 InfluenzaA M1 GILGFVFTL central memory T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*02:01 B2M MHCI -9641 chip0423_727658 8.11 11.86 Chip2 healthy_3 healthy TGTGCCAGCCGTGCAATGTGGGGAGCACCCCTCCACTT CASRAMt?gGSTPPL TRAV14/DV4*01 TRAJ11*01 2.0 7.0 TGTGCCAGCAGTGAAATGTGGGGAGCACCCCTCCACTTT CASSEMWGAPLHF TRBV2*01 TRBJ1-6*01 18.0 824.0 CASRAMt?gGSTPPL_CASSEMWGAPLHF 1 5977 NP44-52 FLU 0.74 474 NP44-52 115 5862 7 InfluenzaA NP CTELKLSDY transitional T cells between effector and memory populations PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*01:01 B2M MHCI -9642 chip0423_697585 11.3 10.2 Chip2 T1D_5 T1D TGTGCCAGCAGTCCCCCGGGGAGAAATGAAAAACTGTTTTTT CASSPPGRNEKLFF TRBV12-3*01,TRBV12-4*01 TRBJ1-4*01 3.0 85.0 _CASSPPGRNEKLFF 11 4015 BZLF1-190-197 EBV 0.78 2156 BZLF1-190-197 133 3882 9 EBV BZLF1 RAKFKQLL effector memory T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-B*08:01 B2M MHCI -9643 chip0423_488803 -3.02 10.93 Chip2 T1D_5 T1D _ 6746 5330 G6PC2-YLK-8 IGRP 0.74 27 G6PC2-YLK-8 133 5197 3 HomoSapiens G6PC2 YLKTNLFL Naive T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-B*08:01 B2M MHCI -9644 chip0423_507154 12.18 10.17 Chip2 T1D_5 T1D TGCAGCGTTGGAACAAGCTATGGCTACACCTTC CSVGTSYGYTF TRBV29-1*01 TRBJ1-2*01 51.0 3797.0 _CSVGTSYGYTF 6 4236 BZLF1-190-197 EBV 0.83 2156 NEG 138 4098 9 EBV BZLF1 RAKFKQLL effector memory T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-B*08:01 B2M MHCI -9645 chip0423_474403 11.48 7.81 Chip2 T1D_4 T1D TGTGCCAGCAGCTTAGGGCAAGCCTACGAGCAGTACTTC CASSLGQAYEQYF TRBV7-8*01 TRBJ2-7*01 14.0 716.0 _CASSLGQAYEQYF 175 5297 EBNA3A-193-201 EBV 0.68 1022 EBNA3A-193-201 137 5160 10 EBV EBNA3A FLRGRAYGL effector memory T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-B*08:01 B2M MHCI -9646 chip0423_564289 10.95 8.63 Chip2 T1D_5 T1D TGTGCAGCAACGGAAACCTCCTACGACAAGGTGATATTT CAATETSYDKVIF TRAV13-1*01 TRAJ50*01 37.0 3628.0 TGTGCCAGCAGCCCTCTTGGGAGCAATGAAAAACTGTTTTTT CASSPLGSNEKLFF TRBV7-9*01 TRBJ1-4*01 31.0 1029.0 CAATETSYDKVIF_CASSPLGSNEKLFF 25 6686 BZLF1-190-197 EBV 1.0 2156 NEG 127 6559 10 EBV BZLF1 RAKFKQLL effector memory T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-B*08:01 B2M MHCI -9647 chip0423_77358 7.66 13.42 Chip2 healthy_3 healthy TGTGCCAGTAGTATTGGATCCTATGGCTACACCTTC CASSIGSYGYTF TRBV19*01 TRBJ1-2*01 1.0 25.0 _CASSIGSYGYTF 7 3880 M1 FLU 0.65 1250 NEG 104 3776 7 InfluenzaA M1 GILGFVFTL transitional T cells between effector and memory populations PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*02:01 B2M MHCI -9648 chip0423_769280 8.02 13.54 Chip2 healthy_3 healthy TGCAGTGCCGATTCCTACCGGGACATTGATAACTATGGCTACACCTTC CSADSYRDIDNYGYTF TRBV20-1*01 TRBJ1-2*01 33.0 1135.0 _CSADSYRDIDNYGYTF 8 3583 NP44-52 FLU 0.73 474 NEG 97 3486 7 InfluenzaA NP CTELKLSDY transitional T cells between effector and memory populations PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*01:01 B2M MHCI -9649 chip0423_554998 5.04 12.13 Chip2 healthy_4 healthy _ 6746 3186 M1 FLU 1.0 1250 NEG 127 3059 6 InfluenzaA M1 GILGFVFTL central memory T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*02:01 B2M MHCI -9650 chip0423_415953 9.63 13.27 Chip2 T1D_4 T1D TGTGCCAGCAGCTTTATAGGGGAGAACTACGAGCAGTACTTC CASSFIGENYEQYF TRBV7-6*01 TRBJ2-7*01 25.0 1003.0 _CASSFIGENYEQYF 1 3007 BZLF1-190-197 EBV 0.61 2156 NEG 122 2885 6 EBV BZLF1 RAKFKQLL central memory T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-B*08:01 B2M MHCI -9651 chip0423_172719 -3.36 12.04 Chip2 healthy_4 healthy TGTGCCCCGCGAGACATGCGCTTT CAPRDMRF TRAV12-2*01 TRAJ43*01 5.0 153.0 TGTGCCAGCAGTTACCCCCAACCCGGAAACTATGGCTACACCTTC CASSYPQPGNYGYTF TRBV6-5*01 TRBJ1-2*01 15.0 520.0 CAPRDMRF_CASSYPQPGNYGYTF 1 4183 MART1-ALA MART1 0.52 269 NEG 104 4079 1 HomoSapiens MART1 ALAGIGILTV Naive T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*02:01 B2M MHCI -9652 chip0423_827342 -2.87 12.05 Chip2 T1D_4 T1D TGTGCCAGCAGCCAAGATGGAGCTCCGAACTACGAGCAGTACTTC CASSQDGAPNYEQYF TRBV14*01 TRBJ2-7*01 6.0 179.0 _CASSQDGAPNYEQYF 1 4752 HCVNS3-1073-1081 HCV 0.78 36 NEG 127 4625 1 HCV NS3 CINGVCWTV Naive T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*02:01 B2M MHCI -9653 chip0423_478416 14.73 8.82 Chip2 healthy_4 healthy TGCATCCTTCCCCTAGCTGGTGGTACTAGCTATGGAAAGCTGACATTT CILPLAGGTSYGKLTF TRAV26-2*01 TRAJ52*01 7.0 378.0 TGTGCCAGCAGCTCCGGACAGGCCTACGAGCAGTACTCC CASSSGQAYEQYS TRBV7-8*01 TRBJ2-7*01 17.0 1123.0 CILPLAGGTSYGKLTF_CASSSGQAYEQYS 1 2321 EBNA3A-193-201 EBV 0.8 1022 NEG 117 2204 12 EBV EBNA3A FLRGRAYGL effector T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-B*08:01 B2M MHCI -9654 chip0423_360356 8.89 13.8 Chip2 healthy_3 healthy TGTGCTAGTGGTCCGACTCATGGCTACACCTTC CASGPTHGYTF TRBV12-5*01 TRBJ1-2*01 1.0 54.0 _CASGPTHGYTF 3 3290 NP44-52 FLU 0.55 474 NP44-52 127 3163 11 InfluenzaA NP CTELKLSDY effector T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*01:01 B2M MHCI -9655 chip0423_508127 11.51 8.66 Chip2 T1D_4 T1D TGTGCCAGCAGCCAAGTCAACAACCCGGGGGATGGCTACACCTTC CASSQVNNPGDGYTF TRBV14*01 TRBJ1-2*01 9.0 313.0 _CASSQVNNPGDGYTF 94 4433 EBNA3A-158-166 EBV 0.71 444 NEG 139 4294 10 EBV EBNA3A QAKWRLQTL effector memory T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-B*08:01 B2M MHCI -9656 chip0423_138757 -3.74 11.24 Chip2 T1D_4 T1D TGTGCCCTGCGCGGAGGAACCCAAGGAAATCTCATCTTT CALRGGTQGNLIF TRAV12-2*01 TRAJ42*01 7.0 432.0 TGTGCCAGCAGCTCCCTTACGGGTGAGCAGTTCTTC CASSSLTGEQFF TRBV5-4*01 TRBJ2-1*01 1.0 11.0 CALRGGTQGNLIF_CASSSLTGEQFF 1 4981 GAD65-159-167 GAD65 0.45 7 NEG 131 4850 1 HomoSapiens GAD65 ILMHCQTTL Naive T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*02:01 B2M MHCI -9657 chip0423_90644 6.82 11.31 Chip2 healthy_3 healthy TGTGCCAACTATACGCCCCGGGGGCCCCTCACTGAAGCTTTCTTT CANYTPRGPLTEAFF TRBV28*01 TRBJ1-1*01 25.0 1020.0 _CANYTPRGPLTEAFF 1 7221 IAPP-STN-9 IAPP 0.51 48 IAPP-STN-9 98 7123 7 HomoSapiens IAPP STNVGSNTY transitional T cells between effector and memory populations PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*01:01 B2M MHCI -9658 chip0423_827493 15.19 10.25 Chip2 T1D_4 T1D TGCATCGTCAGAGAGGGAGGAGGTGCTGACGGACTCCCCTTC CIVREGGGADGLPF TRAV26-1*01 TRAJ45*01 4.0 196.0 TGTGCCAGCCGCCAATTGGGGGCGGCGCAGGAAGGCACTGAAGCTTTCTTT CASRQLGAAQEGTEAFF TRBV11-1*01 TRBJ1-1*01 4.0 118.0 CIVREGGGADGLPF_CASRQLGAAQEGTEAFF 1 3883 BZLF1-190-197 EBV 0.76 2156 BZLF1-190-197 120 3763 12 EBV BZLF1 RAKFKQLL effector T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-B*08:01 B2M MHCI -9659 chip0423_768729 15.74 12.29 Chip2 healthy_3 healthy TGTGCAGCGGATTCCGGGTATGCACTCAACTTC CAADSGYALNF TRAV13-2*01 TRAJ41*01 1.0 38.0 CAADSGYALNF_ 1 2849 NP44-52 FLU 0.51 474 NP44-52 140 2709 12 InfluenzaA NP CTELKLSDY effector T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*01:01 B2M MHCI -9660 chip0423_604859 0.55 8.57 Chip2 T1D_5 T1D TGTGCCAGCAGCCCCCAAGAGGGGCCGACCTACGAGCAGTACTTC CASSPQEGPTYEQYF TRBV9*01 TRBJ2-7*01 14.0 873.0 _CASSPQEGPTYEQYF 1 7723 IAPP-STN-9 IAPP 0.64 48 IAPP-STN-9 113 7610 4 HomoSapiens IAPP STNVGSNTY Naive T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*01:01 B2M MHCI -9661 chip0423_233757 14.09 13.13 Chip2 T1D_6 T1D TGCATCCTCCCACTTGCTGGTGGTACTAGCTATGGAAAGCTGACATTT CILPLAGGTSYGKLTF TRAV26-2*01 TRAJ52*01 12.0 556.0 TGTGCCAGCAGCTTGGGACAGGCCTACGAGCAGTACTTC CASSLGQAYEQYF TRBV7-8*01 TRBJ2-7*01 14.0 576.0 CILPLAGGTSYGKLTF_CASSLGQAYEQYF 308 2120 EBNA3A-193-201 EBV 0.88 1022 NEG 140 1980 12 EBV EBNA3A FLRGRAYGL effector T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-B*08:01 B2M MHCI -9662 chip0423_124102 -4.92 9.21 Chip2 healthy_3 healthy TGTGCCAGCACGACCGGGTATAATTCACCCCTCCACTTT CASTTGYNSPLHF TRAV39*01 TRAJ34*01 2.0 11.0 TGTGCCAGCACGACCGGGTATAATTCACCCCTCCACTTT CASTTGYNSPLHF TRBV27*01 TRBJ1-6*01 30.0 2141.0 CASTTGYNSPLHF_CASTTGYNSPLHF 1 5477 MART1-26-35 MART1 0.42 3 MART1-26-35 129 5348 2 HomoSapiens MART1 EAAGIGILTV Naive T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*02:01 B2M MHCI -9663 chip0423_749292 9.66 11.06 Chip2 healthy_4 healthy CGTGTTGTGCTAATGCCAGACTCTTGTTT RVVLat?ARLLF TRAV8-2*01 TRAJ31*01 22.0 2076.0 TGTGCCAGCAGCCAAGGGGGTAGCGGGGCCCAAGAGACCCAGTACTTC CASSQGGSGAQETQYF TRBV4-2*01 TRBJ2-5*01 47.0 1901.0 RVVLat?ARLLF_CASSQGGSGAQETQYF 1 4606 EBV-BRLF1 EBV 0.94 1264 EBV-BRLF1 105 4501 9 EBV BRLF1 YVLDHLIVV effector memory T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*02:01 B2M MHCI -9664 chip0423_795710 8.97 9.71 Chip2 T1D_6 T1D TGTGCCAGCAGTGGAGGACACCCGGCCTACAATGAGCAGTTCTTC CASSGGHPAYNEQFF TRBV2*01 TRBJ2-1*01 1.0 29.0 _CASSGGHPAYNEQFF 2 5102 BZLF1-190-197 EBV 0.67 2156 NEG 142 4960 8 EBV BZLF1 RAKFKQLL effector memory T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-B*08:01 B2M MHCI -9665 chip0423_435918 14.82 12.02 Chip2 T1D_5 T1D TGTGCAGAGATGGAACCCTCCTCCGACCGGCTGCTATTT CAEMEPSSDRLLF TRAV13-2*01 TRAJ50*01 6.0 372.0 CAEMEPSSDRLLF_ 1 2142 BZLF1-190-197 EBV 0.56 2156 NEG 117 2025 12 EBV BZLF1 RAKFKQLL effector T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-B*08:01 B2M MHCI -9666 chip0423_150670 -3.3 8.27 Chip2 T1D_6 T1D TGTGCCAGCAGCTACGGTACAGGGCTTTCAGATACGCAGTATTTT CASSYGTGLSDTQYF TRBV13*01 TRBJ2-3*01 26.0 1285.0 _CASSYGTGLSDTQYF 1 9219 ROTA-VP3 ROTA 0.63 41 NEG 106 9113 2 RotavirusA VP3 YLLPGWKL Naive T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*02:01 B2M MHCI -9667 chip0423_379275 -2.3 12.67 Chip2 T1D_4 T1D TGTGCCGTGGAACGGTGGACCAATGCAGGCAAATCAACCTTT CAVERWTNAGKSTF TRAV12-2*01 TRAJ27*01 36.0 2122.0 TGTGCCAGCAGTTTCGGGACTGGGGATGAGCAGTTCTTC CASSFGTGDEQFF TRBV27*01 TRBJ2-1*01 25.0 2515.0 CAVERWTNAGKSTF_CASSFGTGDEQFF 1 4275 ZNT8-153-161 ZNT8 0.63 41 ZNT8-153-161 104 4171 1 HomoSapiens ZNT8 VVTGVLVYL Naive T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*02:01 B2M MHCI -9668 chip0423_269010 8.8 9.31 Chip2 T1D_5 T1D TGTGCAGCGGCGGAAACCTCCTACGACAAGGTGATATTT CAAAETSYDKVIF TRAV13-1*01 TRAJ50*01 18.0 1974.0 TGTGCCATCCAACTAGCGGGAGGCACCGGGGAGCTGTTTTTT CAIQLAGGTGELFF TRBV24-1*01 TRBJ2-2*01 1.0 37.0 CAAAETSYDKVIF_CAIQLAGGTGELFF 1 4707 BZLF1-190-197 EBV 0.45 2156 NEG 148 4559 8 EBV BZLF1 RAKFKQLL effector memory T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-B*08:01 B2M MHCI -9669 chip0423_823265 -4.17 10.11 Chip2 healthy_3 healthy TGTGCAATGAGCATATCTAACTTTGGAAATGAGAAATTAACCTTT CAMSISNFGNEKLTF TRAV12-3*01 TRAJ48*01 53.0 2094.0 TGTGCCAGCAGTTCGGGACGCCCTAGCTCCTATAATTCACCCCTCCACTTT CASSSGRPSSYNSPLHF TRBV28*01 TRBJ1-6*01 1.0 55.0 CAMSISNFGNEKLTF_CASSSGRPSSYNSPLHF 1 5598 PGT-178 PGT 0.63 1480 PGT-178 107 5491 2 HomoSapiens PGT LLAGIGTVPI Naive T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*02:01 B2M MHCI -9670 chip0423_809799 13.67 7.74 Chip2 T1D_5 T1D TGCGCCAGCAGCCAAGATTCTCACAGCGCCTACGAGCAGTACTTC CASSQDSHSAYEQYF TRBV4-1*01 TRBJ2-7*01 5.0 327.0 _CASSQDSHSAYEQYF 1 3297 BZLF1-190-197 EBV 0.79 2156 BZLF1-190-197 128 3169 10 EBV BZLF1 RAKFKQLL effector memory T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-B*08:01 B2M MHCI -9671 chip0423_763100 13.21 7.85 Chip2 T1D_5 T1D TGTGCCAGCAGCTTATTAGGGGAGGACCAGCCCCAGCATTTT CASSLLGEDQPQHF TRBV7-9*01 TRBJ1-5*01 18.0 729.0 _CASSLLGEDQPQHF 1 3318 BZLF1-190-197 EBV 1.0 2156 NEG 119 3199 10 EBV BZLF1 RAKFKQLL effector memory T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-B*08:01 B2M MHCI -9672 chip0423_618724 -2.32 10.41 Chip2 T1D_5 T1D TGTGCCAGCATGCCGGGCTCCTACAATGAGCAGTTCTTC CASMPGSYNEQFF TRBV7-9*01 TRBJ2-1*01 11.0 823.0 _CASMPGSYNEQFF 1 7522 ZNT8-YAK-9 ZNT8 0.94 59 ZNT8-YAK-9 108 7414 3 HomoSapiens ZNT8 YAKWKLCSA Naive T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-B*08:01 B2M MHCI -9673 chip0423_70856 -3.11 13.84 Chip2 T1D_6 T1D TGTGCCAGCAGTCCGGAATTCTCCTATAATTCACCCCTCCACTTT CASSPEFSYNSPLHF TRBV9*01 TRBJ1-6*01 9.0 268.0 _CASSPEFSYNSPLHF 1 3983 INS-MAL-8 INS 0.71 38 NEG 112 3871 1 HomoSapiens INS MALWMRLL Naive T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-B*08:01 B2M MHCI -9674 chip0423_877516 -3.76 10.09 Chip2 healthy_3 healthy CGTGCCAGCGGGGCGGGACGGGAGACCCAGTACTTC RASGAGRETQYF TRBV7-4*01 TRBJ2-5*01 9.0 782.0 _RASGAGRETQYF 1 5715 PGT-178 PGT 0.88 1480 PGT-178 108 5607 2 HomoSapiens PGT LLAGIGTVPI Naive T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*02:01 B2M MHCI -9675 chip0423_695017 13.18 11.03 Chip2 T1D_5 T1D TGTGCCGCTCAGGAAACCTCCTACGACAAGGTGATATTT CAAQETSYDKVIF TRAV13-1*01 TRAJ50*01 4.0 173.0 TGTGCCAGCACCCAGGTAGACAGACCCAACTATGGCTACACCTTC CASTQVDRPNYGYTF TRBV7-9*01 TRBJ1-2*01 53.0 1664.0 CAAQETSYDKVIF_CASTQVDRPNYGYTF 17 2554 BZLF1-190-197 EBV 0.55 2156 NEG 117 2437 9 EBV BZLF1 RAKFKQLL effector memory T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-B*08:01 B2M MHCI -9676 chip0423_674506 7.31 10.99 Chip2 healthy_3 healthy TGCGCCAGCAGCCAAGATGGACTAGCGGCAACTAGCACAGATACGCAGTATTTT CASSQDGLAATSTDTQYF TRBV4-1*01 TRBJ2-3*01 15.0 201.0 _CASSQDGLAATSTDTQYF 6 6777 NP44-52 FLU 0.64 474 NP44-52 117 6660 7 InfluenzaA NP CTELKLSDY transitional T cells between effector and memory populations PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*01:01 B2M MHCI -9677 chip0423_284021 12.22 12.74 Chip2 T1D_5 T1D _ 6746 2615 BZLF1-190-197 EBV 0.4 2156 NEG 118 2497 11 EBV BZLF1 RAKFKQLL effector T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-B*08:01 B2M MHCI -9678 chip0423_749895 14.29 7.8 Chip2 T1D_5 T1D TGTGCAGCTCTCGAAACCTCCTACGACAAGGTGATATTT CAALETSYDKVIF TRAV13-1*01 TRAJ50*01 28.0 2098.0 TGTGCCAGCAGTCCCGACGGATCCACCGGGGAGCTGTTTTTT CASSPDGSTGELFF TRBV12-3*01,TRBV12-4*01 TRBJ2-2*01 120.0 5750.0 CAALETSYDKVIF_CASSPDGSTGELFF 14 3135 BZLF1-190-197 EBV 0.91 2156 NEG 133 3002 10 EBV BZLF1 RAKFKQLL effector memory T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-B*08:01 B2M MHCI -9679 chip0423_650980 9.8 9.24 Chip2 T1D_4 T1D TGTGCTGTGAGTGATGGAGAAGGAGCCCAGAAGCTGGTATTT CAVSDGEGAQKLVF TRAV8-6*01 TRAJ54*01 37.0 1993.0 TGTGCCAGCAGCTTAACGGTTCTGGCAGGTCCAAACACTGAAGCTTTCTTT CASSLTVLAGPNTEAFF TRBV7-3*01 TRBJ1-1*01 9.0 209.0 CAVSDGEGAQKLVF_CASSLTVLAGPNTEAFF 44 6034 BZLF1-190-197 EBV 0.91 2156 BZLF1-190-197 134 5900 8 EBV BZLF1 RAKFKQLL effector memory T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-B*08:01 B2M MHCI -9680 chip0423_264483 -3.39 13.18 Chip2 T1D_5 T1D TGTGCCAGCAGCCCCGAAGGACATCGCCCCTACGAGCAGTACTTC CASSPEGHRPYEQYF TRBV9*01 TRBJ2-7*01 37.0 2284.0 _CASSPEGHRPYEQYF 1 2916 GAD2-EVK-9 GAD65 0.5 2 NEG 99 2817 1 HomoSapiens GAD2 EVKEKGMAA Naive T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-B*08:01 B2M MHCI -9681 chip0423_620422 6.62 10.41 Chip2 T1D_6 T1D TGCATCCTCCCACTTGCTGGTGGTACTAGCTATGGAAAGCTGACATTT CILPLAGGTSYGKLTF TRAV26-2*01 TRAJ52*01 1.0 60.0 TGTGCCAGCAGCTTGGGACAGGCCTACGAGCAGTACTTC CASSLGQAYEQYF TRBV7-8*01 TRBJ2-7*01 17.0 740.0 CILPLAGGTSYGKLTF_CASSLGQAYEQYF 308 6917 EBNA3A-193-201 EBV 0.95 1022 EBNA3A-193-201 135 6782 6 EBV EBNA3A FLRGRAYGL central memory T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-B*08:01 B2M MHCI -9682 chip0423_563737 -2.94 14.33 Chip2 T1D_4 T1D TGGGCTCCCCAGCCGGGGAGACGACTACCAGTTCCCCGTT WAPQPGag??acDYQFPV TRAV9-2*01 TRAJ20*01 8.0 698.0 WAPQPGag??acDYQFPV_ 1 2956 GAG-77-86 HIV 0.54 15 NEG 101 2855 1 HIV-1 GAG SLYNTVATLY Naive T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*02:01 B2M MHCI -9683 chip0423_534229 6.22 14.13 Chip2 healthy_3 healthy TGTGCTGTTGAAGTCGACAAGCTCATCTTT CAVEVDKLIF TRAV41*01 TRAJ34*01 6.0 597.0 TGTGCCAGCAGCTTGTGGTACAGGGTGGAGACCCAGTACTTC CASSLWYRVETQYF TRBV5-6*01 TRBJ2-5*01 85.0 4643.0 CAVEVDKLIF_CASSLWYRVETQYF 3 6817 NP44-52 FLU 0.77 474 NP44-52 127 6690 7 InfluenzaA NP CTELKLSDY transitional T cells between effector and memory populations PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*01:01 B2M MHCI -9684 chip0423_871374 11.66 11.14 Chip2 T1D_6 T1D TCCACCCCCGCTACCTCGTCCCTGTCACCCGTCCTCCTTT STPATStc??ccCHPSSF TRAV26-1*01 TRAJ49*01 5.0 1328.0 TGCAGCGCCGGCAGGGACGGGACTAATGAAAAACTGTTTTTT CSAGRDGTNEKLFF TRBV29-1*01 TRBJ1-4*01 82.0 4096.0 STPATStc??ccCHPSSF_CSAGRDGTNEKLFF 1 3406 EBV-BLMF1 EBV 0.7 2531 NEG 162 3244 9 EBV BLMF1 GLCTLVAML effector memory T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*02:01 B2M MHCI -9685 chip0423_622172 -1.53 8.63 Chip2 T1D_5 T1D TGTGTGGTTAATTCAGGAACCTACAAATACATCTTT CVVNSGTYKYIF TRAV12-1*01 TRAJ40*01 4.0 427.0 CVVNSGTYKYIF_ 1 6662 LMP2A-CPL EBV 0.83 44 NEG 98 6564 3 EBV LMP2A CPLSKILL Naive T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-B*08:01 B2M MHCI -9686 chip0423_567932 14.88 12.88 Chip2 T1D_4 T1D TGTGCAGCAAGTGAAGGAGGTGCTGACGGACTCACCTTT CAASEGGADGLTF TRAV13-1*01 TRAJ45*01 54.0 2710.0 TGTGCCAGCAGTCATAGGCGCGGGGGTGTGTACCAAGAGACCCAGTACTTC CASSHRRGGVYQETQYF TRBV9*01 TRBJ2-5*01 41.0 1013.0 CAASEGGADGLTF_CASSHRRGGVYQETQYF 1 2155 BZLF1-190-197 EBV 0.83 2156 NEG 122 2033 12 EBV BZLF1 RAKFKQLL effector T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-B*08:01 B2M MHCI -9687 chip0423_481687 11.5 9.1 Chip2 T1D_6 T1D TGCATCCTCCCACTTGCTGGTGGTACTAGCTATGGAAAGCTGACATTT CILPLAGGTSYGKLTF TRAV4*01,TRAV26-2*01 TRAJ52*01 2.0 47.0 TGTGCCAGCAGCTTGGGACAGGCCTACGAGCAGTACTTC CASSLGQAYEQYF TRBV7-8*01 TRBJ2-7*01 12.0 521.0 CILPLAGGTSYGKLTF_CASSLGQAYEQYF 308 3370 EBNA3A-193-201 EBV 0.6 1022 NEG 150 3220 9 EBV EBNA3A FLRGRAYGL effector memory T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-B*08:01 B2M MHCI -9688 chip0423_422268 -2.66 13.56 Chip2 T1D_4 T1D TGTGCCAGCAGCCACAGGGTCGACGAGCAGTACTTC CASSHRVDEQYF TRBV7-9*01 TRBJ2-7*01 2.0 77.0 _CASSHRVDEQYF 1 3443 EBNA3A-193-201 EBV 0.78 1022 NEG 116 3327 1 EBV EBNA3A FLRGRAYGL Naive T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-B*08:01 B2M MHCI -9689 chip0423_156980 -1.1 10.23 Chip2 T1D_6 T1D TGTGCTGTGTGCGGATCTGAAAAGCTGGTCTTT CAVCGSEKLVF TRAV20*01 TRAJ57*01 20.0 1897.0 CAVCGSEKLVF_ 1 6903 PGT-178 PGT 0.4 1480 NEG 112 6791 3 HomoSapiens PGT LLAGIGTVPI Naive T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*02:01 B2M MHCI -9690 chip0423_787261 8.83 13.69 Chip2 T1D_4 T1D TGTGCCAGTAGTATGTTCGGGGTGAACACTGAAGCTTTCTTT CASSMFGVNTEAFF TRBV19*01 TRBJ1-1*01 34.0 1452.0 _CASSMFGVNTEAFF 1 2304 ZNT8-153-161 ZNT8 1.0 41 NEG 131 2173 11 HomoSapiens ZNT8 VVTGVLVYL effector T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*02:01 B2M MHCI -9691 chip0423_185872 -3.06 13.3 Chip2 T1D_4 T1D TGTGCCGTGACCTCCCGGGGGGCCGACAAGCTCATCTTT CAVTSRGADKLIF TRAV12-2*01 TRAJ34*01 12.0 764.0 TGTGCCAGCCTCCGCGGGGGGCAGGTGTCCTACGAGCAGTACTTC CASLRGGQVSYEQYF TRBV28*01 TRBJ2-7*01 23.0 1574.0 CAVTSRGADKLIF_CASLRGGQVSYEQYF 1 5027 PGT-178 PGT 0.88 1480 PGT-178 121 4906 1 HomoSapiens PGT LLAGIGTVPI Naive T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*02:01 B2M MHCI -9692 chip0423_793598 13.44 13.28 Chip2 T1D_5 T1D TGTGCGGGGGGAGAAACCTCCTACGACAAGGTGATATTT CAGGETSYDKVIF TRAV13-1*01 TRAJ50*01 37.0 3117.0 CAGGETSYDKVIF_ 1 2412 BZLF1-190-197 EBV 0.42 2156 NEG 115 2297 11 EBV BZLF1 RAKFKQLL effector T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-B*08:01 B2M MHCI -9693 chip0423_241349 8.8 9.19 Chip2 T1D_4 T1D _ 6746 5687 BZLF1-190-197 EBV 0.84 2156 BZLF1-190-197 124 5563 8 EBV BZLF1 RAKFKQLL effector memory T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-B*08:01 B2M MHCI -9694 chip0423_20131 10.88 12.75 Chip2 healthy_4 healthy _ 6746 2965 EBNA3A-193-201 EBV 0.74 1022 EBNA3A-193-201 113 2852 11 EBV EBNA3A FLRGRAYGL effector T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-B*08:01 B2M MHCI -9695 chip0423_248533 5.91 13.76 Chip2 healthy_3 healthy TGCGCCAGCAGCCAAGATGGGTACGGGGGGGATCAGCCCCAGCATTTT CASSQDGYGGDQPQHF TRBV4-1*01 TRBJ1-5*01 22.0 809.0 _CASSQDGYGGDQPQHF 4 5084 NP44-52 FLU 0.52 474 NP44-52 117 4967 7 InfluenzaA NP CTELKLSDY transitional T cells between effector and memory populations PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*01:01 B2M MHCI -9696 chip0423_756020 4.87 10.72 Chip2 T1D_6 T1D TGCGCCAGCAGTGACATTAGGGAGGGGCCGGGTGCAGCTCTCTTT CASSDIREGPGAALF TRBV10-2*01 TRBJ1-1*01 4.0 248.0 _CASSDIREGPGAALF 1 4292 EBNA3A-158-166 EBV 0.89 444 NEG 125 4167 6 EBV EBNA3A QAKWRLQTL central memory T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-B*08:01 B2M MHCI -9697 chip0423_715627 -3.12 11.43 Chip2 healthy_3 healthy TGTGCAGCAACGGAGTACACTCACGGGAGGAGGAAACAAACTCACCTTT CAATEYTH??gGGGNKLTF TRAV13-1*01 TRAJ10*01 1.0 22.0 TGTGCCAGCAGTGAATCCGGGTTAGGCGGGGAGCTGTTTTTT CASSESGLGGELFF TRBV6-1*01 TRBJ2-2*01 4.0 254.0 CAATEYTH??gGGGNKLTF_CASSESGLGGELFF 1 4131 MART1-ALA MART1 0.47 269 NEG 108 4023 1 HomoSapiens MART1 ALAGIGILTV Naive T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*02:01 B2M MHCI -9698 chip0423_622549 -4.47 9.42 Chip2 healthy_3 healthy TGCGGCACAGAGAAGGATAACTTCAACAAATTTTACTTT CGTEKDNFNKFYF TRAV30*01 TRAJ21*01 16.0 614.0 TGTGCCAGCAGTTTTGCTCCCCCCAGAAGCTCCTACAATGAGCAGTTCTTC CASSFAPPRSSYNEQFF TRBV27*01 TRBJ2-1*01 66.0 4492.0 CGTEKDNFNKFYF_CASSFAPPRSSYNEQFF 1 5224 NP44-52 FLU 0.71 474 NEG 111 5113 2 InfluenzaA NP CTELKLSDY Naive T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*01:01 B2M MHCI -9699 chip0423_537685 5.92 11.23 Chip2 healthy_4 healthy TGTGCCAGCAGCTTATTGAGCGCGGATTCACCCCTCCACTTT CASSLLSADSPLHF TRBV7-8*01 TRBJ1-6*01 12.0 440.0 _CASSLLSADSPLHF 1 6239 PGT-178 PGT 0.95 1480 PGT-178 133 6106 6 HomoSapiens PGT LLAGIGTVPI central memory T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*02:01 B2M MHCI -9700 chip0423_814058 -2.77 13.49 Chip2 T1D_6 T1D TGTGCCAGCAGCTTAGAGATGACTAGCACAGATACGCAGTATTTT CASSLEMTSTDTQYF TRBV11-1*01 TRBJ2-3*01 7.0 230.0 _CASSLEMTSTDTQYF 1 4443 PGT-178 PGT 0.89 1480 PGT-178 123 4320 1 HomoSapiens PGT LLAGIGTVPI Naive T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*02:01 B2M MHCI -9701 chip0423_539242 -3.84 12.45 Chip2 T1D_4 T1D TTTGCAATGAGCGCGTCTACCTTTGTCCTTGGGGATTTTGCCTTT FAMSASTFVLGDFAF TRAV12-3*01 TRAJ48*01,TRAJ44*01 2.0 5.0 TGGGCAATGAGCGCGTAGAACTTTGGAAATGAGAAATTAACCTTT WAMSA*NFGNEKLTF TRAV12-3*01 TRAJ48*01 4.0 244.0 0.5 TGCGCCAGCAGTCATAAAGGGTTCTCCTACAATGAGCAGTTCTTC CASSHKGFSYNEQFF TRBV4-3*01 TRBJ2-1*01 48.0 3553.0 FAMSASTFVLGDFAF_CASSHKGFSYNEQFF 1 3913 PGT-178 PGT 0.74 1480 PGT-178 116 3797 1 HomoSapiens PGT LLAGIGTVPI Naive T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*02:01 B2M MHCI -9702 chip0423_461057 9.88 9.93 Chip2 T1D_5 T1D TGTGCCAGCAGCCCCCTAGGGAGCCTGAACACTGAAGCTTTCTTT CASSPLGSLNTEAFF TRBV7-9*01 TRBJ1-1*01 61.0 1915.0 _CASSPLGSLNTEAFF 1 5177 BZLF1-190-197 EBV 0.89 2156 BZLF1-190-197 141 5036 9 EBV BZLF1 RAKFKQLL effector memory T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-B*08:01 B2M MHCI -9703 chip0423_167526 -3.58 13.57 Chip2 T1D_4 T1D TGTGCCTTGAACACCAATGCAGGCAAATCAACCTTT CALNTNAGKSTF TRAV24*01 TRAJ27*01 2.0 127.0 TGTGCCAGCAGTTGGGGCAGTATGAACACTGAAGCTTTCTTT CASSWGSMNTEAFF TRAV39*01 TRAJ42*01,TRAJ40*01 2.0 7.0 0.5 TGTGCCAGCAGTTGGGGCAGTATGAACACTGAAGCTTTCTTT CASSWGSMNTEAFF TRBV27*01 TRBJ1-1*01 59.0 2855.0 CALNTNAGKSTF_CASSWGSMNTEAFF 1 3646 PTPRN-805-813 PTPRN 0.61 11 NEG 103 3543 1 HomoSapiens PTPRN VIVMLTPLV Naive T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*02:01 B2M MHCI -9704 chip0423_653704 15.54 9.24 Chip2 healthy_4 healthy TGTGCTGTGGAGAAGAAGAACACCGACAAGCTCATCTTT CAVEKKNTDKLIF TRAV21*01 TRAJ34*01 5.0 224.0 CAVEKKNTDKLIF_ 5 2713 BZLF1-190-197 EBV 0.85 2156 NEG 122 2591 12 EBV BZLF1 RAKFKQLL effector T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-B*08:01 B2M MHCI -9705 chip0423_444992 -3.63 8.53 Chip2 healthy_3 healthy TGCATCCTGAGCGGTGGCTCTAGGTTGACCTTT CILSGGSRLTF TRAV26-2*01 TRAJ10*01 17.0 2008.0 TGCAGCGTATCGACAGGGCTGTCCTACGAGCAGTACTTC CSVSTGLSYEQYF TRBV29-1*01 TRBJ2-7*01 141.0 8884.0 CILSGGSRLTF_CSVSTGLSYEQYF 1 6650 ZNT8-186-194 ZNT8 0.6 22 NEG 101 6549 2 HomoSapiens ZNT8 VAANIVLTV Naive T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*02:01 B2M MHCI -9706 chip0423_766639 -2.74 13.62 Chip2 T1D_5 T1D _ 6746 5200 NP140-148 FLU 0.43 102 NEG 108 5092 1 InfluenzaA NP HSNLNDATY Naive T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*01:01 B2M MHCI -9707 chip0423_128627 -2.47 8.84 Chip2 T1D_6 T1D TGTGCAGCCCCAGGACAGAACAGAGATGACAAGATCATCTTT CAAPGQNRDDKIIF TRAV25*01 TRAJ30*01 91.0 4930.0 TGTGCCAGCTCACCACCACAGGGACGAGGGGGCTACACCTTC CASSPPQGRGGYTF TRBV18*01 TRBJ1-2*01 41.0 2029.0 CAAPGQNRDDKIIF_CASSPPQGRGGYTF 1 8061 PGT-178 PGT 0.83 1480 PGT-178 119 7942 2 HomoSapiens PGT LLAGIGTVPI Naive T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*02:01 B2M MHCI -9708 chip0423_745390 -2.42 7.24 Chip2 healthy_3 healthy TGCAGTGCTCGCCCGGACAGGGGGAGAGAGGGCTACACCTTC CSARPDRGREGYTF TRBV20-1*01 TRBJ1-2*01 12.0 621.0 _CSARPDRGREGYTF 1 5368 ZNT8-228-236 ZNT8 0.83 8 NEG 110 5258 5 HomoSapiens ZNT8 SISVLISAL natural killer-like T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*02:01 B2M MHCI -9709 chip0423_594886 10.3 8.96 Chip2 healthy_4 healthy TGCGCCAGCAGCTGGGGACAGGGACCTACCTACGAGCAGTACTTC CASSWGQGPTYEQYF TRBV4-1*01 TRBJ2-7*01 30.0 1474.0 _CASSWGQGPTYEQYF 5 3764 BZLF1-190-197 EBV 0.82 2156 NEG 121 3643 8 EBV BZLF1 RAKFKQLL effector memory T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-B*08:01 B2M MHCI -9710 chip0423_310575 14.29 10.49 Chip2 T1D_4 T1D TGTGCCAGCAGCTTTACGGTTCTGGCAGGCCCAAACACTGAAGCTTTCTTT CASSFTVLAGPNTEAFF TRBV7-3*01 TRBJ1-1*01 13.0 419.0 _CASSFTVLAGPNTEAFF 1 3050 BZLF1-190-197 EBV 0.92 2156 BZLF1-190-197 147 2903 12 EBV BZLF1 RAKFKQLL effector T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-B*08:01 B2M MHCI -9711 chip0423_497559 -1.16 11.06 Chip2 T1D_4 T1D TGTGCCAGCAGCCAAGATCCTTCCGGGGCCCTTCATTCACCCCTCCACTTG CASSQDPSGALHSPLHL TRBV3-1*01 TRBJ1-6*01 4.0 306.0 _CASSQDPSGALHSPLHL 1 4126 PGT-178 PGT 0.65 1480 NEG 111 4015 3 HomoSapiens PGT LLAGIGTVPI Naive T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*02:01 B2M MHCI -9712 chip0423_126084 -3.04 8.94 Chip2 healthy_3 healthy _ 6746 7665 HCVNS4B-1807-1816 HCV 0.8 74 NEG 113 7552 2 HCV NS4B LLFNILGGWV Naive T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*02:01 B2M MHCI -9713 chip0423_732639 7.27 12.85 Chip2 healthy_3 healthy TGCGCCAGCAGCCAAGATGGACTAGCGGCAACTAGCACAGATACGCAGTATTTT CASSQDGLAATSTDTQYF TRBV4-1*01 TRBJ2-3*01 38.0 1212.0 _CASSQDGLAATSTDTQYF 6 3585 NP44-52 FLU 0.86 474 NEG 109 3476 7 InfluenzaA NP CTELKLSDY transitional T cells between effector and memory populations PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*01:01 B2M MHCI -9714 chip0423_154368 -0.63 9.69 Chip2 T1D_6 T1D TGTGCCAGTAAATTTCGGCCCGGCACAGATACGCAGTATTTT CASKFRPGTDTQYF TRBV19*01 TRBJ2-3*01 15.0 688.0 _CASKFRPGTDTQYF 1 7123 GAD2-TLK-8 GAD65 0.5 11 NEG 116 7007 3 HomoSapiens GAD2 TLKKMREI Naive T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-B*08:01 B2M MHCI -9715 chip0423_522559 -4.11 8.63 Chip2 T1D_6 T1D TGTGCAGAGGGCTTTCAGCAACTTGTATTT CAEGFQQLVF TRAV13-2*01 TRAJ8*01 7.0 1057.0 TGTGCCAGCAGTTTACGGGGGCGAGATACGCAGTATTTT CASSLRGRDTQYF TRBV27*01 TRBJ2-3*01 23.0 1978.0 CAEGFQQLVF_CASSLRGRDTQYF 1 8117 G6PC2-NLI-8 IGRP 0.97 32 G6PC2-NLI-8 109 8008 2 HomoSapiens G6PC2 NLIFKWIL Naive T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-B*08:01 B2M MHCI -9716 chip0423_485133 -1.67 10.51 Chip2 T1D_6 T1D TGTGCCGGGGGGGCGGGCAGGCGAGCACTTACTTTT CAGGAGRRALTF TRAV12-2*01 TRAJ5*01 9.0 832.0 TGTGCCTGGGCTAGGGGCACCGGGGAGCTGTTTTTT CAWARGTGELFF TRBV12-3*01,TRBV12-4*01 TRBJ2-2*01 17.0 1204.0 CAGGAGRRALTF_CAWARGTGELFF 1 5387 MART1-ALA MART1 0.5 269 NEG 117 5270 3 HomoSapiens MART1 ALAGIGILTV Naive T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*02:01 B2M MHCI -9717 chip0423_292912 -3.9 12.62 Chip2 T1D_4 T1D TGTGCAATGATCTCGGATAGCAACTATCAGTTAATCTGG CAMISDSNYQLIW TRAV12-3*01 TRAJ33*01 30.0 1673.0 TGTGCCAGCAGCCCCGCCCCTGCCCACACCTTC CASSPAPAHTF TRBV7-9*01 TRBJ1-2*01 10.0 1033.0 CAMISDSNYQLIW_CASSPAPAHTF 1 4324 INS-6-16 INS 0.81 20 INS-6-16 109 4215 1 HomoSapiens INS RLLPLLALLAL Naive T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*02:01 B2M MHCI -9718 chip0423_848434 14.0 9.83 Chip2 healthy_4 healthy TGTGCTCTAAGGGACATGGAATATGGAAACAAGCTGGTCTTT CALRDMEYGNKLVF TRAV16*01 TRAJ47*01 1.0 168.0 TGTGCCAGCAGCTTAATTGTTAGCGGGGGGGCAAATGAGCAGTTCTTC CASSLIVSGGANEQFF TRBV7-3*01 TRBJ2-1*01 13.0 901.0 CALRDMEYGNKLVF_CASSLIVSGGANEQFF 1 4426 BZLF1-190-197 EBV 0.91 2156 NEG 134 4292 12 EBV BZLF1 RAKFKQLL effector T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-B*08:01 B2M MHCI -9719 chip0423_739019 15.1 11.9 Chip2 T1D_5 T1D TGTGCCAACAGCTTCACTAGCGGGACAGATCCTGAGCTGTTTTTT CANSFTSGTDPELFF TRBV7-9*01 TRBJ2-2*01 12.0 529.0 _CANSFTSGTDPELFF 1 2102 BZLF1-190-197 EBV 0.67 2156 NEG 121 1981 12 EBV BZLF1 RAKFKQLL effector T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-B*08:01 B2M MHCI -9720 chip0423_670485 12.85 10.57 Chip2 T1D_5 T1D TGTGCCAGCAGTGGACGTGTAGAGGAATACGGCGGGGAGCTGTTTTTT CASSGRVEEYGGELFF TRBV27*01 TRBJ2-2*01 10.0 294.0 _CASSGRVEEYGGELFF 6 4995 BZLF1-190-197 EBV 0.54 2156 NEG 143 4852 9 EBV BZLF1 RAKFKQLL effector memory T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-B*08:01 B2M MHCI -9721 chip0423_520116 -4.26 8.57 Chip2 T1D_4 T1D TGTGCTTATCGGTTGGATGACAAGATCATCTTT CAYRLDDKIIF TRAV38-1*01 TRAJ30*01 19.0 1872.0 TGTGCCAGCTCAGATACAGGGGTTACTATGAACACTGAAGCTTTCTTT CASSDTGVTMNTEAFF TRBV2*01 TRBJ1-1*01 57.0 2682.0 CAYRLDDKIIF_CASSDTGVTMNTEAFF 1 4474 MART1-A28L MART1 0.57 84 NEG 124 4350 2 HomoSapiens MART1 ALGIGILTV Naive T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*02:01 B2M MHCI -9722 chip0423_258619 11.62 8.96 Chip2 T1D_4 T1D TGTGCCAGCAGCTTAACGGTTCTGGCAGGTCCAAACACTGAAGCTTTCTTT CASSLTVLAGPNTEAFF TRBV7-3*01 TRBJ1-1*01 22.0 730.0 _CASSLTVLAGPNTEAFF 32 3581 BZLF1-190-197 EBV 0.89 2156 BZLF1-190-197 135 3446 10 EBV BZLF1 RAKFKQLL effector memory T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-B*08:01 B2M MHCI -9723 chip0423_233045 15.52 12.31 Chip2 T1D_5 T1D TGTGCAGCAATGGAAACCTCCTACGACAAGGTGATATTT CAAMETSYDKVIF TRAV13-1*01 TRAJ50*01 28.0 2921.0 TGTGCCACCAGAGACCACAGGGACGGGACCGGGGAGCTGTTTTTT CATRDHRDGTGELFF TRBV24-1*01 TRBJ2-2*01 50.0 1703.0 CAAMETSYDKVIF_CATRDHRDGTGELFF 4 2038 BZLF1-190-197 EBV 0.43 2156 NEG 132 1906 12 EBV BZLF1 RAKFKQLL effector T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-B*08:01 B2M MHCI -9724 chip0423_564634 -4.46 8.53 Chip2 T1D_6 T1D TGCGCTGTGAGAGATCGGGGCACGGGCAGGAGAGCACTTACTTTT CAVRDRGTGRRALTF TRAV1-1*01 TRAJ5*01 20.0 1508.0 CAVRDRGTGRRALTF_ 1 6625 PGT-178 PGT 0.54 1480 PGT-178 127 6498 2 HomoSapiens PGT LLAGIGTVPI Naive T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*02:01 B2M MHCI -9725 chip0423_251234 11.02 11.54 Chip2 T1D_5 T1D TGTGCCAGCAGCTTAGTGGACAGGCCCTACGAGCAGTACTTC CASSLVDRPYEQYF TRBV7-9*01 TRBJ2-7*01 2.0 48.0 _CASSLVDRPYEQYF 13 2912 BZLF1-190-197 EBV 0.5 2156 NEG 138 2774 9 EBV BZLF1 RAKFKQLL effector memory T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-B*08:01 B2M MHCI -9726 chip0423_48380 -3.0 13.38 Chip2 T1D_6 T1D TGCGCTGTGAGAGATCAGGATTATGGTGGTACTACAAACAAGCTCATCTTT CAVRDQDYGGTTNKLIF TRAV1-1*01 TRAJ32*01 53.0 1197.0 TGTGCCAGCAGTTTCGTCGACAATGAGCAGTTCTTC CASSFVDNEQFF TRBV12-3*01,TRBV12-4*01 TRBJ2-1*01 59.0 4552.0 CAVRDQDYGGTTNKLIF_CASSFVDNEQFF 1 3383 POL-132-140 HIV 0.88 37 NEG 112 3271 1 HIV-1 POL LVGPTPVNI Naive T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*02:01 B2M MHCI -9727 chip0423_54377 13.2 7.41 Chip2 T1D_5 T1D TGTGCAGCAACGGAAACCTCCTACGACAAGGTGATATTT CAATETSYDKVIF TRAV13-1*01 TRAJ50*01 2.0 141.0 TGTGCCAGCAGTCCCCCGGGGAGAAATGAAAAACTGTTTTTT CASSPPGRNEKLFF TRBV12-3*01,TRBV12-4*01 TRBJ1-4*01 21.0 859.0 CAATETSYDKVIF_CASSPPGRNEKLFF 34 2823 BZLF1-190-197 EBV 0.54 2156 NEG 113 2710 10 EBV BZLF1 RAKFKQLL effector memory T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-B*08:01 B2M MHCI -9728 chip0423_869575 12.25 13.21 Chip2 T1D_5 T1D GGTGTAGGAAGCGAAAACTCCTACGACAAGGTGATAGTT GVGSENSYDKVIV TRAV13-1*01 TRAJ50*01 3.0 231.0 GVGSENSYDKVIV_ 1 1941 BZLF1-190-197 EBV 0.8 2156 NEG 119 1822 11 EBV BZLF1 RAKFKQLL effector T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-B*08:01 B2M MHCI -9729 chip0423_661874 13.34 6.83 Chip2 T1D_4 T1D TGTGCCGCCTCTGAAACCTCCTACGACAAGGTGATATTT CAASETSYDKVIF TRAV13-1*01 TRAJ50*01 24.0 2046.0 TGTGCCAGCAGCTCGACAGGGGGCGGGGATCAGCCCCAGCATTTT CASSSTGGGDQPQHF TRBV7-9*01 TRBJ1-5*01 17.0 563.0 CAASETSYDKVIF_CASSSTGGGDQPQHF 9 5942 BZLF1-190-197 EBV 0.42 2156 NEG 154 5788 10 EBV BZLF1 RAKFKQLL effector memory T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-B*08:01 B2M MHCI -9730 chip0423_658080 6.18 14.14 Chip2 healthy_3 healthy TGTGCTCTGATTTTTTTCTGGTGGCTACAGTAAGCTGATTATT CALIFFW??tGYSKLII TRAV19*01 TRAJ4*01 34.0 1541.0 CALIFFW??tGYSKLII_ 1 5886 NP44-52 FLU 0.81 474 NP44-52 117 5769 7 InfluenzaA NP CTELKLSDY transitional T cells between effector and memory populations PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*01:01 B2M MHCI -9731 chip0423_860208 -1.6 11.34 Chip2 T1D_6 T1D TGTGCCAGCAGTTACTCGGCTGCTAGCTCCTATAATTCACCCCTCCACTTT CASSYSAASSYNSPLHF TRBV6-5*01 TRBJ1-6*01 51.0 1219.0 _CASSYSAASSYNSPLHF 1 5070 PGT-178 PGT 0.58 1480 NEG 107 4963 3 HomoSapiens PGT LLAGIGTVPI Naive T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*02:01 B2M MHCI -9732 chip0423_656489 9.42 9.25 Chip2 healthy_3 healthy _ 6746 5047 EBV-BRLF1 EBV 0.62 1264 EBV-BRLF1 116 4931 8 EBV BRLF1 YVLDHLIVV effector memory T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*02:01 B2M MHCI -9733 chip0423_640705 5.9 9.2 Chip2 T1D_4 T1D TGTGCTGTGCTCCAGGATAGCCCCTCTCAGTTCATCTGG CAVLQDSPSQFIW TRAV12-2*01 TRAJ33*01 4.0 217.0 TGCGCCAGCAGTGATGACGGAATGAACACTGAAGCTTTCTTT CASSDDGMNTEAFF TRBV10-2*01 TRBJ1-1*01 47.0 1640.0 CAVLQDSPSQFIW_CASSDDGMNTEAFF 1 7422 EBV-LMP2A EBV 0.86 700 EBV-LMP2A 121 7301 6 EBV LMP2A CLGGLLTMV central memory T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*02:01 B2M MHCI -9734 chip0423_485372 10.33 9.54 Chip2 T1D_5 T1D TGTGCCAGCAGCCCTCTTGGGAGCAATGAAAAACTGTTTTTT CASSPLGSNEKLFF TRBV7-9*01 TRBJ1-4*01 9.0 307.0 _CASSPLGSNEKLFF 20 3158 BZLF1-190-197 EBV 1.0 2156 NEG 106 3052 9 EBV BZLF1 RAKFKQLL effector memory T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-B*08:01 B2M MHCI -9735 chip0423_196515 5.56 12.71 Chip2 healthy_3 healthy TGTGCCCGCAGTGCAATGTGGGGAGCACCCCTCCACTT CARSAMt?gGSTPPL TRAV14/DV4*01 TRAJ11*01 2.0 10.0 TGTGCCAGCAGTGAAATGTGGGGAGCACCCCTCCACTTT CASSEMWGAPLHF TRBV2*01 TRBJ1-6*01 30.0 1562.0 CARSAMt?gGSTPPL_CASSEMWGAPLHF 1 7703 NP44-52 FLU 0.85 474 NP44-52 107 7596 7 InfluenzaA NP CTELKLSDY transitional T cells between effector and memory populations PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*01:01 B2M MHCI -9736 chip0423_50120 5.77 10.35 Chip2 T1D_4 T1D TGTGCCAGCAGTTACTCAAGTACAGGGGAGTACTTC CASSYSSTGEYF TRBV6-2*01,TRBV6-3*01 TRBJ2-7*01 53.0 2524.0 _CASSYSSTGEYF 32 7640 EBV-LMP1-1 EBV 0.57 237 NEG 122 7518 6 EBV LMP1 YLLEMLWRL central memory T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*02:01 B2M MHCI -9737 chip0423_832491 -3.15 10.39 Chip2 T1D_6 T1D TGCGCCAGCAGTACAGTAGGGGTGGGAAAACTGTTTTTT CASSTVGVGKLFF TRBV4-1*01 TRBJ1-4*01 20.0 736.0 _CASSTVGVGKLFF 1 5727 EBNA3A-158-166 EBV 0.94 444 EBNA3A-158-166 110 5617 2 EBV EBNA3A QAKWRLQTL Naive T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-B*08:01 B2M MHCI -9738 chip0423_399325 -4.46 9.29 Chip2 T1D_6 T1D TGTGCAAGGACTATATCTAACTTTGGCCCTGCGCTACTCGCCTTT CARTISNFGPALLAF TRAV12-3*01 TRAJ48*01 29.0 457.0 TGTGCCATGCGTATATCTAACTTTGGAGTTGCGTACTGCACCTTT CAMRISNFGVAYCTF TRAV12-3*01 TRAJ48*01 21.0 1429.0 0.26 TGTGCCAGTGTAGGGGATACGCCGTATTTT CASVGDTPYF TRBV28*01 TRBJ2-3*01 25.0 2701.0 CARTISNFGPALLAF_CASVGDTPYF 1 5782 PGT-178 PGT 0.59 1480 PGT-178 124 5658 2 HomoSapiens PGT LLAGIGTVPI Naive T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*02:01 B2M MHCI -9739 chip0423_3079 11.09 10.63 Chip2 T1D_4 T1D TGTGCTGTCAATTCAGGAAACACACCTCTTGTCTTT CAVNSGNTPLVF TRAV1-2*01 TRAJ29*01 1.0 17.0 TGTGCCAGCAGCCAAGTCAACAACCCGGGGGATGGCTACACCTTC CASSQVNNPGDGYTF TRBV14*01 TRBJ1-2*01 6.0 260.0 CAVNSGNTPLVF_CASSQVNNPGDGYTF 31 3984 EBNA3A-158-166 EBV 0.87 444 EBNA3A-158-166 105 3879 9 EBV EBNA3A QAKWRLQTL effector memory T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-B*08:01 B2M MHCI -9740 chip0423_800641 -1.01 10.36 Chip2 T1D_4 T1D TGTGCAATGAGCATATCTAACTTTGGAAATGAGAAATTAACCTTT CAMSISNFGNEKLTF TRAV12-3*01 TRAJ48*01 44.0 1397.0 TGTGCCAGCAGTCCATCTCTCCGGGACTCCCTTAACTATGGCTACACCTTC CASSPSLRDSLNYGYTF TRBV12-3*01,TRBV12-4*01 TRBJ1-2*01 41.0 2049.0 CAMSISNFGNEKLTF_CASSPSLRDSLNYGYTF 1 6420 PGT-178 PGT 0.49 1480 PGT-178 114 6306 3 HomoSapiens PGT LLAGIGTVPI Naive T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*02:01 B2M MHCI -9741 chip0423_450709 -2.89 10.47 Chip2 T1D_4 T1D TGTGCCACTACGACCTGGGGGGAGCTTGGCTATGGCTACACCTTC CATTTWGELGYGYTF TRBV28*01 TRBJ1-2*01 14.0 411.0 _CATTTWGELGYGYTF 1 5454 EBV-BRLF1 EBV 0.9 1264 NEG 126 5328 4 EBV BRLF1 YVLDHLIVV Naive T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*02:01 B2M MHCI -9742 chip0423_387240 5.97 13.96 Chip2 T1D_6 T1D TGTGCCAGTAGTATCAGGTCCTCCTACGAGCAGTACTTC CASSIRSSYEQYF TRBV19*01 TRBJ2-7*01 10.0 574.0 _CASSIRSSYEQYF 36 6575 M1 FLU 0.71 1250 NEG 128 6447 7 InfluenzaA M1 GILGFVFTL transitional T cells between effector and memory populations PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*02:01 B2M MHCI -9743 chip0423_257519 7.85 13.07 Chip2 healthy_3 healthy TGTGCCAGCAGCCCAAAGACAGGAGCAGGACTAGCGGGTGATGAGCAGTTCTTC CASSPKTGAGLAGDEQFF TRBV11-1*01 TRBJ2-1*01 30.0 492.0 _CASSPKTGAGLAGDEQFF 2 2865 NP44-52 FLU 0.81 474 NP44-52 129 2736 7 InfluenzaA NP CTELKLSDY transitional T cells between effector and memory populations PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*01:01 B2M MHCI -9744 chip0423_712165 10.26 9.66 Chip2 healthy_4 healthy TGTGCAGCAAGTGAAACCTCCTACGACAAGGTGATATTT CAASETSYDKVIF TRAV13-1*01 TRAJ50*01 3.0 183.0 TGTGCCAGCAGCTTAATCTCTTTCGGGACAGACTTAATCTGGGGCCAACGTCCTGACTTTC CASSLISFGT??gT*SGANVLTF TRBV7-3*01 TRBJ2-6*01 7.0 200.0 CAASETSYDKVIF_CASSLISFGT??gT*SGANVLTF 2 4666 BZLF1-190-197 EBV 0.44 2156 NEG 128 4538 9 EBV BZLF1 RAKFKQLL effector memory T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-B*08:01 B2M MHCI -9745 chip0423_705160 11.78 10.15 Chip2 healthy_4 healthy TGTGCCAGCAGGGTAGGCCGAGAACCCACCGGGGAGCTGTTTTTT CASRVGREPTGELFF TRBV3-1*01 TRBJ2-2*01 20.0 777.0 _CASRVGREPTGELFF 13 4239 BZLF1-190-197 EBV 0.68 2156 BZLF1-190-197 108 4131 9 EBV BZLF1 RAKFKQLL effector memory T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-B*08:01 B2M MHCI -9746 chip0423_321193 -3.62 10.02 Chip2 healthy_4 healthy TGTGCAATGAGCGCATCTAACTTTGGAAATGAGAAATTAACCTTT CAMSASNFGNEKLTF TRAV12-3*01 TRAJ48*01 99.0 3907.0 TGTGCCAGCAGCCAAGATCCGGACTACTCCGAAGGGGAGACCCAGTACTTC CASSQDPDYSEGETQYF TRBV14*01 TRBJ2-5*01 33.0 1032.0 CAMSASNFGNEKLTF_CASSQDPDYSEGETQYF 1 4364 PGT-178 PGT 1.0 1480 NEG 95 4269 2 HomoSapiens PGT LLAGIGTVPI Naive T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*02:01 B2M MHCI -9747 chip0423_226205 13.12 7.53 Chip2 T1D_4 T1D TGTGCCAGCAGCTCGGGACAAGCCTACGAGCAGTACTTC CASSSGQAYEQYF TRBV7-8*01 TRBJ2-7*01 36.0 2094.0 _CASSSGQAYEQYF 49 4212 EBNA3A-193-201 EBV 0.68 1022 EBNA3A-193-201 122 4090 10 EBV EBNA3A FLRGRAYGL effector memory T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-B*08:01 B2M MHCI -9748 chip0423_693665 -1.87 9.76 Chip2 T1D_6 T1D TGTGCAACATTGATATCTAACTTTGGAAATGAGAAATTAACCTTT CATLISNFGNEKLTF TRAV12-3*01 TRAJ48*01 49.0 2031.0 TGTGCCAGCAGCTCGATACTGACAGCGACGGAGAACACTGAAGCTTTCTTT CASSSILTATENTEAFF TRBV11-2*01 TRBJ1-1*01 28.0 989.0 CATLISNFGNEKLTF_CASSSILTATENTEAFF 1 7271 PGT-178 PGT 0.67 1480 PGT-178 110 7161 3 HomoSapiens PGT LLAGIGTVPI Naive T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*02:01 B2M MHCI -9749 chip0423_648022 12.26 8.62 Chip2 T1D_5 T1D _ 6746 3990 BZLF1-190-197 EBV 0.89 2156 NEG 109 3881 10 EBV BZLF1 RAKFKQLL effector memory T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-B*08:01 B2M MHCI -9750 chip0423_599877 6.34 13.83 Chip2 healthy_3 healthy TGTGTGGTGAACGGGGAAAATGCCAGGCTCATGTTT CVVNGENARLMF TRAV12-1*01 TRAJ31*01 10.0 582.0 TGTGCCAGCAGTGAAATGTGGGGAGCACCCCTCCACTTT CASSEMWGAPLHF TRBV2*01 TRBJ1-6*01 4.0 227.0 CVVNGENARLMF_CASSEMWGAPLHF 12 5115 NP44-52 FLU 0.82 474 NP44-52 125 4990 7 InfluenzaA NP CTELKLSDY transitional T cells between effector and memory populations PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*01:01 B2M MHCI -9751 chip0423_137406 -3.32 11.41 Chip2 T1D_4 T1D _ 6746 4428 PREINS-2-10 INS 0.77 37 NEG 107 4321 1 HomoSapiens PREINS ALWMRLLPL Naive T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*02:01 B2M MHCI -9752 chip0423_118144 8.58 11.54 Chip2 healthy_4 healthy TGTGCCAGCAGCTCCGGACAGGCCTACGAGCAGTACTTC CASSSGQAYEQYF TRBV7-8*01 TRBJ2-7*01 18.0 1488.0 _CASSSGQAYEQYF 49 3337 EBNA3A-193-201 EBV 0.83 1022 NEG 118 3219 7 EBV EBNA3A FLRGRAYGL transitional T cells between effector and memory populations PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-B*08:01 B2M MHCI -9753 chip0423_277311 9.29 8.5 Chip2 healthy_4 healthy _ 6746 4342 EBV-BLMF1 EBV 0.67 2531 NEG 138 4204 8 EBV BLMF1 GLCTLVAML effector memory T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*02:01 B2M MHCI -9754 chip0423_157996 -3.01 13.46 Chip2 T1D_6 T1D TGTGCCAGCAGCTTAAGTCTCAATCAGCCCCAGCATTTT CASSLSLNQPQHF TRBV3-1*01 TRBJ1-5*01 30.0 994.0 _CASSLSLNQPQHF 1 4268 GAD2-YAF-9 GAD65 0.69 6 NEG 112 4156 1 HomoSapiens GAD2 YAFLHATDL Naive T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-B*08:01 B2M MHCI -9755 chip0423_15633 15.76 10.23 Chip2 healthy_3 healthy TGTGCAGCAAGTATGGGATATGGAAACAAACTGGTCTTT CAASMGYGNKLVF TRAV13-1*01 TRAJ47*01 22.0 1000.0 TGTGCCAGCAGCCAAGGGTTTCGGACGCCCGAGGGTGGCTACACCTTC CASSQGFRTPEGGYTF TRBV3-1*01 TRBJ1-2*01 12.0 571.0 CAASMGYGNKLVF_CASSQGFRTPEGGYTF 1 6134 NP44-52 FLU 0.56 474 NP44-52 121 6013 12 InfluenzaA NP CTELKLSDY effector T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*01:01 B2M MHCI -9756 chip0423_765805 -3.44 10.33 Chip2 healthy_3 healthy TGTGCTGTGGAGGTACACAATAACAATGACATGCGCCTT CAVEVHNNNDMRL TRAV36/DV7*01 TRAJ43*01 44.0 1722.0 CAVEVHNNNDMRL_ 1 5326 ZNT8-PTE-9 ZNT8 0.63 18 ZNT8-PTE-9 102 5224 2 HomoSapiens ZNT8 PTEKGANEY Naive T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*01:01 B2M MHCI -9757 chip0423_534778 -3.29 8.79 Chip2 T1D_5 T1D _ 6746 7672 ZNT8-VTD-9 ZNT8 0.86 65 ZNT8-VTD-9 114 7558 2 HomoSapiens ZNT8 VTDAAHLLI Naive T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*01:01 B2M MHCI -9758 chip0423_420288 11.1 9.07 Chip2 T1D_4 T1D TGTGCCAGCAGTTTGAACCCCGTTCTTCGGTTAGATACGCAGTATTTT CASSLNPVLRLDTQYF TRBV28*01 TRBJ2-3*01 39.0 985.0 _CASSLNPVLRLDTQYF 6 4915 EBNA3A-158-166 EBV 0.5 444 NEG 124 4791 10 EBV EBNA3A QAKWRLQTL effector memory T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-B*08:01 B2M MHCI -9759 chip0423_520036 12.86 7.23 Chip2 healthy_4 healthy CGCATCCTTCCCCTAGCTGGTGGTACTAGCTATGGAAAGCTGACATTT RILPLAGGTSYGKLTF TRAV4*01,TRAV26-2*01 TRAJ52*01 2.0 105.0 TGTGCCAGCAGCTCCGGACAGGCCTACGAGCAGTACTTC CASSSGQAYEQYF TRBV7-8*01 TRBJ2-7*01 12.0 582.0 RILPLAGGTSYGKLTF_CASSSGQAYEQYF 1 2722 EBNA3A-193-201 EBV 0.75 1022 NEG 129 2593 10 EBV EBNA3A FLRGRAYGL effector memory T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-B*08:01 B2M MHCI -9760 chip0423_338109 8.39 13.57 Chip2 healthy_3 healthy TGCGCTGATTACAGCAGTGCTTCCAAGATAATCTTT CADYSSASKIIF TRAV1-1*01 TRAJ3*01 15.0 793.0 TGCGCCAGCAGCCAAGATGGACTAGCGGCAACTAGCACAGATACGCAGTATTTT CASSQDGLAATSTDTQYF TRBV4-1*01 TRBJ2-3*01 6.0 205.0 CADYSSASKIIF_CASSQDGLAATSTDTQYF 4 2811 NP44-52 FLU 0.46 474 NP44-52 106 2705 7 InfluenzaA NP CTELKLSDY transitional T cells between effector and memory populations PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*01:01 B2M MHCI -9761 chip0423_537472 9.64 13.13 Chip2 healthy_3 healthy TGTGCAGGAGCTCTAACAATGACATGCGCTCT CAGALa?cNDMRS TRAV27*01 TRAJ43*01 1.0 52.0 TGCGCCAGCAGTGAACCTGGGCGTGTAGATACGCAGTATTTT CASSEPGRVDTQYF TRBV10-2*01 TRBJ2-3*01 8.0 263.0 CAGALa?cNDMRS_CASSEPGRVDTQYF 1 2569 ZNT8-107-115 ZNT8 1.0 10 NEG 122 2447 6 HomoSapiens ZNT8 LLIDLTSFL central memory T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*02:01 B2M MHCI -9762 chip0423_403185 10.65 7.71 Chip2 T1D_4 T1D TGTGGAGCGAACTTCCCCCCATTTTACTTT CGANFPPFYF TRAV34*01 TRAJ21*01 2.0 108.0 TGTGCCAGCTCACCGAGTCTAGGGGAATACAATGAGCAGTTCTTC CASSPSLGEYNEQFF TRBV18*01 TRBJ2-1*01 10.0 600.0 CGANFPPFYF_CASSPSLGEYNEQFF 1 3921 BZLF1-190-197 EBV 0.67 2156 NEG 127 3794 10 EBV BZLF1 RAKFKQLL effector memory T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-B*08:01 B2M MHCI -9763 chip0423_386474 12.23 8.78 Chip2 T1D_4 T1D TGCATCCTGCCATTGGAGGCTGGTACTCGCTCTGGTCGGCTGACACTT CILPLEAGTRSGRLTL TRAV26-2*01 TRAJ52*01 22.0 1712.0 TGTGCCAGCAGCTCGGGACAAGCCTACGAGCAGTACTTC CASSSGQAYEQYF TRBV7-8*01 TRBJ2-7*01 2.0 54.0 CILPLEAGTRSGRLTL_CASSSGQAYEQYF 1 3436 EBNA3A-193-201 EBV 0.94 1022 EBNA3A-193-201 120 3316 10 EBV EBNA3A FLRGRAYGL effector memory T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-B*08:01 B2M MHCI -9764 chip0423_367549 -1.97 11.96 Chip2 T1D_6 T1D TGTGCAATGAGACGAGATGACGACTACAAGCTCAGCTTT CAMRRDDDYKLSF TRAV14/DV4*01 TRAJ20*01 23.0 2001.0 TGTGCCAGCAGCGTAGGGGGGGGTCTATACAATGAGCAGTTCTTC CASSVGGGLYNEQFF TRBV9*01 TRBJ2-1*01 7.0 253.0 CAMRRDDDYKLSF_CASSVGGGLYNEQFF 1 4933 PTPRN-962-970 PTPRN 0.62 5 NEG 126 4807 4 HomoSapiens PTPRN ALTAVAEEV Naive T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*02:01 B2M MHCI -9765 chip0423_352223 13.17 11.28 Chip2 T1D_5 T1D TGTGCCAGCCTACTCGCGGGCGGCACCGGGGCGCTGTTTTTT CASLLAGGTGALFF TRBV24-1*01 TRBJ2-2*01 8.0 395.0 _CASLLAGGTGALFF 1 3286 BZLF1-190-197 EBV 0.4 2156 NEG 117 3169 9 EBV BZLF1 RAKFKQLL effector memory T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-B*08:01 B2M MHCI -9766 chip0423_745350 -1.01 6.85 Chip2 healthy_3 healthy TGCAGTCCCAAGACCGGTTTGAATACGCAGTATTTT CSPKTGLNTQYF TRBV20-1*01 TRBJ2-3*01 14.0 871.0 _CSPKTGLNTQYF 1 8411 MART1-ALA MART1 0.67 269 NEG 126 8285 3 HomoSapiens MART1 ALAGIGILTV Naive T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*02:01 B2M MHCI -9767 chip0423_91978 -3.91 13.22 Chip2 T1D_6 T1D TGTGCCAGCAGCTTAAGCAGGGCCTACGAGCAGTACTTC CASSLSRAYEQYF TRBV7-2*01 TRBJ2-7*01 31.0 1523.0 _CASSLSRAYEQYF 1 3619 EBNA3A-158-166 EBV 0.8 444 NEG 126 3493 1 EBV EBNA3A QAKWRLQTL Naive T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-B*08:01 B2M MHCI -9768 chip0423_22515 -1.87 9.63 Chip2 T1D_6 T1D TGCGCCAGCAGCCAAGGACAGGGGAACGAGCAGTACTTC CASSQGQGNEQYF TRBV4-1*01 TRBJ2-7*01 17.0 728.0 _CASSQGQGNEQYF 1 6990 PGT-178 PGT 0.46 1480 NEG 110 6880 3 HomoSapiens PGT LLAGIGTVPI Naive T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*02:01 B2M MHCI -9769 chip0423_660989 4.93 11.44 Chip2 healthy_4 healthy TGTGCCAGTAGTATGATGGGTTCGGGCTACAATGAGCAGTTCTTC CASSMMGSGYNEQFF TRBV19*01 TRBJ2-1*01 23.0 1024.0 _CASSMMGSGYNEQFF 15 3891 M1 FLU 1.0 1250 NEG 121 3770 6 InfluenzaA M1 GILGFVFTL central memory T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*02:01 B2M MHCI -9770 chip0423_308655 -2.65 10.27 Chip2 T1D_5 T1D TGTGCCAGCAGCGCGGTGACAGGGGGTCAGACCGGGGAGCTGTTTTTT CASSAVTGGQTGELFF TRBV7-6*01 TRBJ2-2*01 19.0 665.0 _CASSAVTGGQTGELFF 1 5717 IAPP-LNH-9 IAPP 0.93 15 IAPP-LNH-9 106 5611 3 HomoSapiens IAPP LNHLKATPI Naive T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-B*08:01 B2M MHCI -9771 chip0423_835400 -3.59 9.25 Chip2 healthy_4 healthy TGTGCCAGCAGCTTAGAGCAAGCCTACGAGCAGTACTTC CASSLEQAYEQYF TRBV7-8*01 TRBJ2-7*01 1.0 25.0 _CASSLEQAYEQYF 1 4913 PGT-178 PGT 0.6 1480 NEG 116 4797 2 HomoSapiens PGT LLAGIGTVPI Naive T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*02:01 B2M MHCI -9772 chip0423_759098 -3.33 9.59 Chip2 T1D_5 T1D TGCAGTGCTGAACACAGGGTAACCTACAATGAGCAGTTCTTC CSAEHRVTYNEQFF TRBV20-1*01 TRBJ2-1*01 13.0 970.0 _CSAEHRVTYNEQFF 1 6056 NP44-52 FLU 0.56 474 NEG 106 5950 2 InfluenzaA NP CTELKLSDY Naive T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*01:01 B2M MHCI -9773 chip0423_732879 13.27 7.99 Chip2 T1D_5 T1D CGTGCAATTAGAGAGAGGGCGCGCCGTGCTTCCACGCTACTCTTT RAIRERARRASTLLF TRAV14/DV4*01 TRAJ3*01 24.0 1360.0 TGCCGCGTCGGGACCTCGGGCGGCGACACCTTC CRVGTSGGDTF TRBV29-1*01 TRBJ1-2*01 3.0 291.0 RAIRERARRASTLLF_CRVGTSGGDTF 1 2512 BZLF1-190-197 EBV 0.83 2156 NEG 112 2400 10 EBV BZLF1 RAKFKQLL effector memory T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-B*08:01 B2M MHCI -9774 chip0423_587373 10.47 10.39 Chip2 T1D_6 T1D TGTGCAGAGCCTACCCGAAACTTTGGAAATGAGAAATTAACCTTT CAEPTRNFGNEKLTF TRAV13-2*01 TRAJ48*01 9.0 142.0 TGTGCCAGCAGCCAAGTTCGCGGCGGGTACGAGCAGTACTTC CASSQVRGGYEQYF TRBV3-1*01 TRBJ2-7*01 5.0 352.0 CAEPTRNFGNEKLTF_CASSQVRGGYEQYF 1 4600 BZLF1-190-197 EBV 0.88 2156 NEG 114 4486 9 EBV BZLF1 RAKFKQLL effector memory T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-B*08:01 B2M MHCI -9775 chip0423_706522 -2.56 14.39 Chip2 T1D_4 T1D TGTGCCAGCAGCTTAATAATAGTAGCGGGTTCTAGCACAGATACGCAGTATTTT CASSLIIVAGSSTDTQYF TRBV7-8*01 TRBJ2-3*01 37.0 827.0 _CASSLIIVAGSSTDTQYF 1 3037 PGT-178 PGT 0.68 1480 NEG 107 2930 1 HomoSapiens PGT LLAGIGTVPI Naive T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*02:01 B2M MHCI -9776 chip0423_567411 -1.91 10.95 Chip2 T1D_5 T1D TGTGCAGAGAGGGAGACCTCCTACGACAAGGTGATATTT CAERETSYDKVIF TRAV13-2*01 TRAJ50*01 3.0 180.0 TGTGCCTGGAACCGGGACAGGAACACTGAAGCTTTCTTT CAWNRDRNTEAFF TRBV30*01 TRBJ1-1*01 25.0 1117.0 CAERETSYDKVIF_CAWNRDRNTEAFF 1 5842 GAD2-MMI-8 GAD65 0.79 40 GAD2-MMI-8 100 5742 3 HomoSapiens GAD2 MMIARFKM Naive T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-B*08:01 B2M MHCI -9777 chip0423_103359 -1.89 7.8 Chip2 healthy_3 healthy TGTGCCAGTATTAAGGTCGTCGGCGGGAGAGATACGCAGTATTTT CASIKVVGGRDTQYF TRBV28*01 TRBJ2-3*01 6.0 141.0 _CASIKVVGGRDTQYF 1 6202 IAPP-5-13 IAPP 0.62 30 NEG 99 6103 4 HomoSapiens IAPP KLQVFLIVL Naive T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*02:01 B2M MHCI -9778 chip0423_865689 9.58 9.68 Chip2 T1D_5 T1D TGTGCCAGCAGCTCCTTAAGCGGGGGGGCAGGAAATGAGCAGTTCTTC CASSSLSGGAGNEQFF TRBV7-9*01 TRBJ2-1*01 33.0 1471.0 _CASSSLSGGAGNEQFF 33 6141 BZLF1-190-197 EBV 0.54 2156 NEG 121 6020 8 EBV BZLF1 RAKFKQLL effector memory T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-B*08:01 B2M MHCI -9779 chip0423_820862 7.49 11.7 Chip2 healthy_3 healthy TGTGCAGGCGCTCTGGGTGGAGGAAGCCAAGGAAATCTCATCTTT CAGALGGGSQGNLIF TRAV27*01 TRAJ42*01 41.0 1385.0 TGTGCCAGTAGTATTAGAAGCGGCTATGAGCAGTTCTTC CASSIRSGYEQFF TRBV19*01 TRBJ2-1*01 5.0 234.0 CAGALGGGSQGNLIF_CASSIRSGYEQFF 1 6271 M1 FLU 0.83 1250 M1 107 6164 7 InfluenzaA M1 GILGFVFTL transitional T cells between effector and memory populations PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*02:01 B2M MHCI -9780 chip0423_428599 5.61 8.75 Chip2 healthy_3 healthy TGTGCCGTGAGAAGAGATGACAAGATCATCTTT CAVRRDDKIIF TRAV12-2*01 TRAJ30*01 43.0 3812.0 TGCGCCAGCAGTGAACCTGGGCGTGTAGATACGCAGTATTTT CASSEPGRVDTQYF TRBV10-2*01 TRBJ2-3*01 20.0 956.0 CAVRRDDKIIF_CASSEPGRVDTQYF 1 6388 ZNT8-107-115 ZNT8 0.9 10 ZNT8-107-115 129 6259 6 HomoSapiens ZNT8 LLIDLTSFL central memory T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*02:01 B2M MHCI -9781 chip0423_595777 7.59 11.82 Chip2 healthy_3 healthy TGCGCTGATTCCTGCGGTGCTTCCAGGGTCGTCTTT CADSCGASRVVF TRAV1-1*01 TRAJ3*01 2.0 145.0 TGTGCCAGCCAACTAGCGGGCGGCACCGGGGAGCTGTTTTTT CASQLAGGTGELFF TRBV24-1*01 TRBJ2-2*01 1.0 30.0 CADSCGASRVVF_CASQLAGGTGELFF 1 6699 NP44-52 FLU 0.91 474 NEG 119 6580 7 InfluenzaA NP CTELKLSDY transitional T cells between effector and memory populations PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*01:01 B2M MHCI -9782 chip0423_396983 9.0 13.74 Chip2 T1D_5 T1D _ 6746 2313 BZLF1-190-197 EBV 0.8 2156 NEG 123 2190 11 EBV BZLF1 RAKFKQLL effector T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-B*08:01 B2M MHCI -9783 chip0423_61442 11.77 7.36 Chip2 T1D_5 T1D TGTGCAGCAAGTGAAACCTCCTACAACAAGGTGATATTT CAASETSYNKVIF TRAV13-1*01 TRAJ50*01 49.0 3648.0 TGTGCCAGCAGCTTACTCGGGGAAAATGAAAAACTGTTTTTT CASSLLGENEKLFF TRBV7-9*01 TRBJ1-4*01 10.0 346.0 CAASETSYNKVIF_CASSLLGENEKLFF 1 3566 BZLF1-190-197 EBV 0.78 2156 NEG 119 3447 10 EBV BZLF1 RAKFKQLL effector memory T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-B*08:01 B2M MHCI -9784 chip0423_514084 -3.26 10.69 Chip2 T1D_6 T1D TGTGCAATGAGCCTATCTAACTTTGGAAATGAGAAATTAACCTTT CAMSLSNFGNEKLTF TRAV12-3*01 TRAJ48*01 44.0 1944.0 CAMSLSNFGNEKLTF_ 16 5323 PGT-178 PGT 0.74 1480 PGT-178 115 5208 2 HomoSapiens PGT LLAGIGTVPI Naive T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*02:01 B2M MHCI -9785 chip0423_661514 -1.66 11.03 Chip2 healthy_3 healthy _ 6746 5467 HCVNS4B-1807-1816 HCV 0.44 74 NEG 106 5361 3 HCV NS4B LLFNILGGWV Naive T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*02:01 B2M MHCI -9786 chip0423_606661 14.03 10.69 Chip2 T1D_5 T1D TGTGCAGAGATGGAAACCTCCTACGACAAGGTGATATTT CAEMETSYDKVIF TRAV13-2*01 TRAJ50*01 18.0 1874.0 TGTGCCAGCAGCTCCTTAAGCGGGGGGGCAGGAAATGAGCAGTTCTTC CASSSLSGGAGNEQFF TRBV7-9*01 TRBJ2-1*01 32.0 1839.0 CAEMETSYDKVIF_CASSSLSGGAGNEQFF 27 3102 BZLF1-190-197 EBV 0.75 2156 NEG 127 2975 12 EBV BZLF1 RAKFKQLL effector T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-B*08:01 B2M MHCI -9787 chip0423_699017 7.45 9.92 Chip2 healthy_5 healthy TGTGCCAGCAGCACGTTACAGGGGACAAACACTGAAGCTTTCTTT CASSTLQGTNTEAFF TRBV7-9*01 TRBJ1-1*01 26.0 877.0 _CASSTLQGTNTEAFF 1 5728 BZLF1-190-197 EBV 0.74 2156 NEG 115 5613 7 EBV BZLF1 RAKFKQLL transitional T cells between effector and memory populations PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-B*08:01 B2M MHCI -9788 chip0423_562507 -4.79 9.58 Chip2 T1D_6 T1D TGTGCAGAGAATTCAGGAACCTACAAATACATCTTT CAENSGTYKYIF TRAV13-2*01 TRAJ40*01 30.0 1874.0 TGTGCCAGCACTGACACAGGGAGAGGCACCGGGGAGCTGTTTTTT CASTDTGRGTGELFF TRBV7-3*01 TRBJ2-2*01 12.0 362.0 CAENSGTYKYIF_CASTDTGRGTGELFF 1 5370 GFAP-HLK-8 GFAP 0.81 28 GFAP-HLK-8 105 5265 2 HomoSapiens GFAP HLKRNIVV Naive T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-B*08:01 B2M MHCI -9789 chip0423_217734 -1.53 11.78 Chip2 T1D_6 T1D _ 6746 5968 PGT-178 PGT 0.75 1480 NEG 103 5865 3 HomoSapiens PGT LLAGIGTVPI Naive T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*02:01 B2M MHCI -9790 chip0423_198308 15.3 10.1 Chip2 healthy_5 healthy TGTGCCACCTCTGACAGCTGGGGGAAATTGCAGTTT CATSDSWGKLQF TRAV12-2*01 TRAJ24*01 20.0 2045.0 TGTGCCAGCAGCCAAGATCTAAGGGGCGAGCAGTACTTC CASSQDLRGEQYF TRBV4-2*01 TRBJ2-7*01 65.0 2598.0 CATSDSWGKLQF_CASSQDLRGEQYF 2 2952 LMP2A-CPL EBV 0.67 44 NEG 131 2821 12 EBV LMP2A CPLSKILL effector T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-B*08:01 B2M MHCI -9791 chip0423_47010 12.24 7.28 Chip2 T1D_5 T1D TGTGCCAGCAACTTATTGAGCCAGTACACCGGGGAGCTGTTTTTT CASNLLSQYTGELFF TRBV7-2*01 TRBJ2-2*01 29.0 798.0 _CASNLLSQYTGELFF 1 3325 BZLF1-190-197 EBV 0.83 2156 NEG 104 3221 10 EBV BZLF1 RAKFKQLL effector memory T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-B*08:01 B2M MHCI -9792 chip0423_19796 -2.57 11.71 Chip2 healthy_3 healthy TGTGCCAGCAGTGGACTAGCGGGGACCTACGAGCAGTACTTC CASSGLAGTYEQYF TRBV27*01 TRBJ2-7*01 12.0 926.0 _CASSGLAGTYEQYF 1 5166 PGT-178 PGT 0.6 1480 NEG 97 5069 4 HomoSapiens PGT LLAGIGTVPI Naive T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*02:01 B2M MHCI -9793 chip0423_721124 -0.59 10.1 Chip2 T1D_6 T1D TGCAGCGTTGATTGGGGACAGGGGTATCGGTATGGCTACACCTTC CSVDWGQGYRYGYTF TRBV29-1*01 TRBJ1-2*01 29.0 1672.0 _CSVDWGQGYRYGYTF 1 6477 ZNT8-165-173 ZNT8 0.92 11 ZNT8-165-173 105 6372 3 HomoSapiens ZNT8 RLLYPDYQI Naive T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*02:01 B2M MHCI -9794 chip0423_197148 7.43 12.14 Chip2 T1D_6 T1D TGCATCCTCCCACTTGCTGGTGGTACTAGCTATGGAAAGCTGACATTT CILPLAGGTSYGKLTF TRAV26-2*01 TRAJ52*01 35.0 1412.0 CILPLAGGTSYGKLTF_ 55 4239 EBNA3A-193-201 EBV 0.8 1022 EBNA3A-193-201 100 4139 7 EBV EBNA3A FLRGRAYGL transitional T cells between effector and memory populations PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-B*08:01 B2M MHCI -9795 chip0423_171710 -0.18 8.5 Chip2 T1D_5 T1D TGTGCAGCAAGTACCGGCGACACCGACAAGCTCATCTTT CAASTGDTDKLIF TRAV13-1*01 TRAJ34*01 7.0 518.0 TGTGCCAGCAGCTTACTAGCGGGGAACACAGATACGCAGTATTTT CASSLLAGNTDTQYF TRBV7-6*01 TRBJ2-3*01 17.0 824.0 CAASTGDTDKLIF_CASSLLAGNTDTQYF 1 9276 BZLF1-190-197 EBV 0.44 2156 NEG 106 9170 4 EBV BZLF1 RAKFKQLL Naive T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-B*08:01 B2M MHCI -9796 chip0423_540133 11.0 9.43 Chip2 T1D_5 T1D TGCAACGTTGCCGGTAACACTGAAGCTTTCTTT CNVAGNTEAFF TRBV29-1*01 TRBJ1-1*01 66.0 5486.0 _CNVAGNTEAFF 1 3619 BZLF1-190-197 EBV 0.71 2156 NEG 108 3511 9 EBV BZLF1 RAKFKQLL effector memory T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-B*08:01 B2M MHCI -9797 chip0423_463991 -2.28 12.52 Chip2 T1D_6 T1D TGCAGCGTTGATCTCCCTGGCTACACCTTC CSVDLPGYTF TRBV29-1*01 TRBJ1-2*01 12.0 352.0 _CSVDLPGYTF 1 4249 PB1-590-599 FLU 0.72 37 NEG 106 4143 4 InfluenzaA PB1 LVSDGGPNLY Naive T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*01:01 B2M MHCI -9798 chip0423_65311 14.54 11.97 Chip2 T1D_5 T1D TGTGCCAGCAGCTTTTTGGGGCAGATGAACACTGAAGCTTTCTTT CASSFLGQMNTEAFF TRAV36/DV7*01,TRAV20*01 TRAJ40*01 2.0 7.0 TGTGCCAGCAGCTTTTTGGGACAGATGAACACTGAAGCTTTCTTT CASSFLGQMNTEAFF TRBV7-9*01 TRBJ1-1*01 58.0 1809.0 CASSFLGQMNTEAFF_CASSFLGQMNTEAFF 1 2658 BZLF1-190-197 EBV 0.64 2156 NEG 112 2546 12 EBV BZLF1 RAKFKQLL effector T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-B*08:01 B2M MHCI -9799 chip0423_611920 -3.97 7.51 Chip2 T1D_4 T1D TGTGCCAGCAGTTTCCGGGGCTATAATTCACCCCTCCACTTT CASSFRGYNSPLHF TRBV28*01 TRBJ1-6*01 16.0 718.0 _CASSFRGYNSPLHF 1 4104 ZNT8-YAK-9 ZNT8 0.6 59 NEG 111 3993 2 HomoSapiens ZNT8 YAKWKLCSA Naive T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-B*08:01 B2M MHCI -9800 chip0423_17225 12.53 8.45 Chip2 T1D_6 T1D TGCATCCTCCCACTTGCTGGTGGTACTAGCTATGGAAAGCTGACATTT CILPLAGGTSYGKLTF TRAV26-2*01 TRAJ52*01 20.0 867.0 TGTGCCAGCAGCTTGGGACAGGCCTACGAGCAGTACTTC CASSLGQAYEQYF TRBV7-8*01 TRBJ2-7*01 9.0 620.0 CILPLAGGTSYGKLTF_CASSLGQAYEQYF 308 3278 EBNA3A-193-201 EBV 0.64 1022 NEG 102 3176 10 EBV EBNA3A FLRGRAYGL effector memory T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-B*08:01 B2M MHCI -9801 chip0423_880981 -0.91 7.57 Chip2 healthy_3 healthy TGTGCCAGCGCATTCTCGTGGGGAGAGACCCAGTACTTC CASAFSWGETQYF TRBV2*01 TRBJ2-5*01 64.0 4476.0 _CASAFSWGETQYF 1 7391 PGT-178 PGT 0.42 1480 NEG 119 7272 3 HomoSapiens PGT LLAGIGTVPI Naive T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*02:01 B2M MHCI -9802 chip0423_730336 11.33 12.41 Chip2 healthy_3 healthy _ 6746 3382 NP44-52 FLU 0.64 474 NP44-52 124 3258 11 InfluenzaA NP CTELKLSDY effector T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*01:01 B2M MHCI -9803 chip0423_96367 -2.43 12.62 Chip2 healthy_3 healthy TGTGCTCTGAGACGATGGCTCTAGCAACACAGGCCAACTAATCTTT CALRRWLta??gcNTGQLIF TRAV9-2*01 TRAJ37*01 60.0 2409.0 TGTGCCAGCAGTGGCCAGGGTGCGCAATACGAGCAGTACTTC CASSGQGAQYEQYF TRBV2*01 TRBJ2-7*01 29.0 1575.0 CALRRWLta??gcNTGQLIF_CASSGQGAQYEQYF 1 4152 HCVNS4B-1807-1816 HCV 0.5 74 HCVNS4B-1807-1816 115 4037 4 HCV NS4B LLFNILGGWV Naive T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*02:01 B2M MHCI -9804 chip0423_766283 8.7 9.65 Chip2 T1D_4 T1D _ 6746 5933 BZLF1-190-197 EBV 0.79 2156 BZLF1-190-197 108 5825 8 EBV BZLF1 RAKFKQLL effector memory T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-B*08:01 B2M MHCI -9805 chip0423_678746 13.48 10.03 Chip2 T1D_6 T1D TGCAGCGCCGGCAGGGACGGGACTAATGAAAAACTGTTTTTT CSAGRDGTNEKLFF TRBV29-1*01 TRBJ1-4*01 88.0 4792.0 _CSAGRDGTNEKLFF 159 3320 EBV-BLMF1 EBV 0.71 2531 NEG 134 3186 12 EBV BLMF1 GLCTLVAML effector T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*02:01 B2M MHCI -9806 chip0423_366066 16.09 10.25 Chip2 T1D_6 T1D TGCGCCAGCAGTCTCCCTCCATGGGGCTGCCTACAATGAGCAGTTCTTC CASSLPPW??gAAYNEQFF TRBV4-3*01 TRBJ2-1*01 2.0 70.0 _CASSLPPW??gAAYNEQFF 9 3819 EBNA3A-193-201 EBV 0.53 1022 NEG 140 3679 12 EBV EBNA3A FLRGRAYGL effector T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-B*08:01 B2M MHCI -9807 chip0423_242142 15.69 9.87 Chip2 T1D_5 T1D TGTGCCAGCAGCTTATTAGGAAGCGATTCAGATACGCAGTATTTT CASSLLGSDSDTQYF TRBV7-9*01 TRBJ2-3*01 42.0 1686.0 _CASSLLGSDSDTQYF 1 3524 BZLF1-190-197 EBV 0.6 2156 NEG 137 3387 12 EBV BZLF1 RAKFKQLL effector T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-B*08:01 B2M MHCI -9808 chip0423_562501 -4.04 10.0 Chip2 healthy_3 healthy _ 6746 4559 PGT-178 PGT 0.56 1480 NEG 118 4441 2 HomoSapiens PGT LLAGIGTVPI Naive T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*02:01 B2M MHCI -9809 chip0423_196803 12.23 13.46 Chip2 T1D_4 T1D TGTGCTGTGAGTGATGGAGAAGGAGCCCAGAAGCTGGTCTTT CAVSDGEGAQKLVF TRAV8-6*01 TRAJ54*01 17.0 780.0 TGTGCCAGCAGCTTAACGGTTCTGGCAGGTCCAAACACTGAAGCTTTCTTT CASSLTVLAGPNTEAFF TRBV7-3*01 TRBJ1-1*01 42.0 1387.0 CAVSDGEGAQKLVF_CASSLTVLAGPNTEAFF 44 2068 BZLF1-190-197 EBV 0.83 2156 NEG 128 1940 11 EBV BZLF1 RAKFKQLL effector T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-B*08:01 B2M MHCI -9810 chip0423_63997 13.91 9.5 Chip2 healthy_3 healthy _ 6746 2848 EBV-BRLF1 EBV 0.7 1264 EBV-BRLF1 122 2726 12 EBV BRLF1 YVLDHLIVV effector T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*02:01 B2M MHCI -9811 chip0423_827502 -3.97 11.83 Chip2 T1D_4 T1D TGTGCCAGCAGTGACGGGACAGGGGCCTACGAGCAGTACTTC CASSDGTGAYEQYF TRBV12-3*01,TRBV12-4*01 TRBJ2-7*01 14.0 977.0 _CASSDGTGAYEQYF 1 4240 EBNA3A-193-201 EBV 0.41 1022 NEG 95 4145 1 EBV EBNA3A FLRGRAYGL Naive T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-B*08:01 B2M MHCI -9812 chip0423_465109 12.84 6.91 Chip2 healthy_3 healthy _ 6746 4048 GAD65-114-122 GAD65 0.71 63 NEG 151 3897 10 HomoSapiens GAD65 VMNILLQYV effector memory T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*02:01 B2M MHCI -9813 chip0423_375759 10.88 7.38 Chip2 T1D_5 T1D TGTGCCAGCAGCTGGCTCGGGGATCGGTATAATTCACCCCTCCACTTT CASSWLGDRYNSPLHF TRBV7-9*01 TRBJ1-6*01 16.0 796.0 _CASSWLGDRYNSPLHF 44 5975 BZLF1-190-197 EBV 0.54 2156 NEG 115 5860 6 EBV BZLF1 RAKFKQLL central memory T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-B*08:01 B2M MHCI -9814 chip0423_348980 -2.24 12.7 Chip2 T1D_6 T1D TGTGCCAGCAGCGTCCTTGGACAGGGGATTGGAATGAATCAGCCCCAGCATTTT CASSVLGQGIGMNQPQHF TRBV11-1*01 TRBJ1-5*01 49.0 1267.0 _CASSVLGQGIGMNQPQHF 1 3586 GFAP-ALD-9 GFAP 0.5 11 NEG 102 3484 4 HomoSapiens GFAP ALDIEIATY Naive T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*01:01 B2M MHCI -9815 chip0423_117334 14.69 8.47 Chip2 T1D_6 T1D TGCAGCGCCGGCAGGGACGGGACTAATGAAAAACTGTTTTTT CSAGRDGTNEKLFF TRBV29-1*01 TRBJ1-4*01 38.0 2038.0 _CSAGRDGTNEKLFF 159 3212 EBV-BLMF1 EBV 0.7 2531 NEG 147 3065 12 EBV BLMF1 GLCTLVAML effector T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*02:01 B2M MHCI -9816 chip0423_6912 11.26 9.8 Chip2 healthy_4 healthy TGTGCCAGCAGCTCCGGACAGGCCTACGAGCAGTACTTC CASSSGQAYEQYF TRBV7-8*01 TRBJ2-7*01 13.0 813.0 _CASSSGQAYEQYF 49 3693 EBNA3A-193-201 EBV 1.0 1022 EBNA3A-193-201 127 3566 9 EBV EBNA3A FLRGRAYGL effector memory T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-B*08:01 B2M MHCI -9817 chip0423_505916 9.03 8.46 Chip2 healthy_4 healthy _ 6746 5199 EBV-BRLF1 EBV 0.94 1264 EBV-BRLF1 125 5074 8 EBV BRLF1 YVLDHLIVV effector memory T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*02:01 B2M MHCI -9818 chip0423_99935 -2.29 10.6 Chip2 T1D_5 T1D TGTGCAATGAGTCCCGATTATGGAGGAAGCCAAGGAAATCTCATCTTT CAMSPDYGGSQGNLIF TRAV12-3*01 TRAJ42*01 117.0 3843.0 TGTGCCACCAGTGATTTGACCTGGGGCGGAGAGCAGTACGTC CATSDLTWGGEQYV TRBV24-1*01 TRBJ2-7*01 3.0 198.0 CAMSPDYGGSQGNLIF_CATSDLTWGGEQYV 1 4946 G6PC2-LTS-10 IGRP 0.81 59 G6PC2-LTS-10 114 4832 3 HomoSapiens G6PC2 LTSLTILQLY Naive T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*01:01 B2M MHCI -9819 chip0423_43511 7.55 12.46 Chip2 healthy_3 healthy TGTGCCCCTGCATCAGGAGGAAGCTACATACCTACATTT CAPASGGSYIPTF TRAV24*01 TRAJ6*01 34.0 2761.0 TGTGCCAGCTGCCGGGACGGGACCTACGAGCAGTACTTC CASCRDGTYEQYF TRBV10-3*01 TRBJ2-7*01 32.0 2743.0 CAPASGGSYIPTF_CASCRDGTYEQYF 10 4327 NP44-52 FLU 0.71 474 NP44-52 112 4215 7 InfluenzaA NP CTELKLSDY transitional T cells between effector and memory populations PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*01:01 B2M MHCI -9820 chip0423_31473 -4.04 9.44 Chip2 T1D_6 T1D TGTGCTACGGACGCGGCACACAACCTCTTCTTG CATDAAHNLFL TRAV17*01 TRAJ36*01 14.0 1318.0 TGTGCCAGCAGCTTCCTCGAGGGACTAGGGCAGCAGTATTTT CASSFLEGLGQQYF TRBV11-3*01 TRBJ2-3*01 14.0 495.0 CATDAAHNLFL_CASSFLEGLGQQYF 1 5520 MART1-A28L MART1 0.89 84 NEG 110 5410 2 HomoSapiens MART1 ALGIGILTV Naive T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*02:01 B2M MHCI -9821 chip0423_868559 10.85 11.98 Chip2 T1D_4 T1D TGTGCCAGCAGTCCCCAGGGACAGGGTCAGGACGCTTTCTTT CASSPQGQGQDAFF TRBV27*01 TRBJ1-1*01 24.0 960.0 _CASSPQGQGQDAFF 1 2543 BZLF1-190-197 EBV 0.59 2156 NEG 116 2427 9 EBV BZLF1 RAKFKQLL effector memory T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-B*08:01 B2M MHCI -9822 chip0423_255013 -3.34 13.52 Chip2 T1D_4 T1D _ 6746 4042 PGT-178 PGT 0.5 1480 NEG 98 3944 1 HomoSapiens PGT LLAGIGTVPI Naive T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*02:01 B2M MHCI -9823 chip0423_765653 -2.17 10.42 Chip2 T1D_5 T1D TGTGCTGTGAGGCCCGTCCCAGGCACACTCATCTTT CAVRPVPGTLIF TRAV21*01 TRAJ37*01 6.0 546.0 TGTGCCCGTACTACCGACGGATCCCATGCGCAGTTCTTC CARTTDGSHAQFF TRBV19*01 TRBJ2-1*01 4.0 302.0 CAVRPVPGTLIF_CARTTDGSHAQFF 1 4312 IAPP-STN-9 IAPP 0.5 48 NEG 118 4194 3 HomoSapiens IAPP STNVGSNTY Naive T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*01:01 B2M MHCI -9824 chip0423_1657 9.04 11.39 Chip2 healthy_3 healthy TGCGCCAGCAGCTTAGACTCCTACGAGCAGTACTTC CASSLDSYEQYF TRBV5-1*01 TRBJ2-7*01 1.0 16.0 _CASSLDSYEQYF 1 7179 PTPRN-805-813 PTPRN 0.64 11 NEG 103 7076 9 HomoSapiens PTPRN VIVMLTPLV effector memory T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*02:01 B2M MHCI -9825 chip0423_450414 12.02 6.57 Chip2 T1D_5 T1D _ 6746 5421 BZLF1-190-197 EBV 1.0 2156 NEG 141 5280 10 EBV BZLF1 RAKFKQLL effector memory T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-B*08:01 B2M MHCI -9826 chip0423_713393 -3.01 11.6 Chip2 healthy_3 healthy TGTGCAGAGATAGACAATGACATGCGCTTT CAEIDNDMRF TRAV13-2*01 TRAJ43*01 1.0 47.0 TGTGCCAGCAGTTTTATGCAGGGCGGTGGGACCCAGTACTTC CASSFMQGGGTQYF TRBV27*01 TRBJ2-5*01 40.0 2779.0 CAEIDNDMRF_CASSFMQGGGTQYF 1 3929 GAD2-VSA-10 GAD65 0.76 21 GAD2-VSA-10 106 3823 4 HomoSapiens GAD2 VSATAGTTVY Naive T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*01:01 B2M MHCI -9827 chip0423_794027 -4.68 9.54 Chip2 T1D_6 T1D GGTGCGGGGTCTTGGCAACGTGGACAAATTTTACTTT GAGSWQ??cVDKFYF TRAV27*01 TRAJ21*01 10.0 885.0 TGCAGTGCTAGAAGTGGGGGGACAGGGGGCGCCGGGTGGGATCAGCCCCAGCATTTT CSARSGGTGGAGWDQPQHF TRBV20-1*01 TRBJ1-5*01 51.0 1644.0 GAGSWQ??cVDKFYF_CSARSGGTGGAGWDQPQHF 1 7617 PGT-178 PGT 0.62 1480 PGT-178 109 7508 2 HomoSapiens PGT LLAGIGTVPI Naive T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*02:01 B2M MHCI -9828 chip0423_265181 14.48 10.59 Chip2 healthy_4 healthy TGTGCTGTGGAGGATCAAGGGAGATCTTATAACACCGACAAGCTCATCTTT CAVEDQGRSYNTDKLIF TRAV2*01 TRAJ34*01 1.0 34.0 TGTGCCAGCAGCTTAAACGTCGGGGAGGGCGCAGGAAACACCATATATTTT CASSLNVGEGAGNTIYF TRBV7-6*01 TRBJ1-3*01 15.0 601.0 CAVEDQGRSYNTDKLIF_CASSLNVGEGAGNTIYF 10 4088 BZLF1-190-197 EBV 0.75 2156 NEG 108 3980 12 EBV BZLF1 RAKFKQLL effector T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-B*08:01 B2M MHCI -9829 chip0423_649219 6.14 9.3 Chip2 T1D_4 T1D TGTGCCAGCAGCCAAGAGGAGTTAGCGGGGGGTAAGCAGTATTTT CASSQEELAGGKQYF TRBV4-2*01 TRBJ2-3*01 19.0 698.0 _CASSQEELAGGKQYF 1 8145 EBV-LMP1-1 EBV 0.7 237 EBV-LMP1-1 121 8024 6 EBV LMP1 YLLEMLWRL central memory T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*02:01 B2M MHCI -9830 chip0423_583715 5.99 13.55 Chip2 healthy_3 healthy TGTGCTAGTGGTCCGACTCATGGCTACACCTTC CASGPTHGYTF TRBV12-5*01 TRBJ1-2*01 8.0 631.0 _CASGPTHGYTF 3 5426 NP44-52 FLU 0.73 474 NP44-52 119 5307 7 InfluenzaA NP CTELKLSDY transitional T cells between effector and memory populations PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*01:01 B2M MHCI -9831 chip0423_520607 -4.13 8.55 Chip2 T1D_6 T1D TGCAGTGCTCCTACTAGCGACGGTTACGAGCAGTACTTC CSAPTSDGYEQYF TRBV20-1*01 TRBJ2-7*01 2.0 241.0 _CSAPTSDGYEQYF 1 7631 Gag260-267 HIV 0.5 10 NEG 119 7512 2 HIV-1 Gag EIYKRWII Naive T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-B*08:01 B2M MHCI -9832 chip0423_498830 -3.57 12.43 Chip2 T1D_6 T1D TGTGCAGAGAACGGAAATTCCGGGTATGCACTCAACTTC CAENGNSGYALNF TRAV5*01,TRAV13-2*01 TRAJ41*01 2.0 48.0 TGTGCCAGCTCGCGGGGGGCCGGCGCAGATACGCAGTATTTT CASSRGAGADTQYF TRBV18*01 TRBJ2-3*01 11.0 319.0 CAENGNSGYALNF_CASSRGAGADTQYF 1 4663 BZLF1-190-197 EBV 0.78 2156 NEG 126 4537 1 EBV BZLF1 RAKFKQLL Naive T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-B*08:01 B2M MHCI -9833 chip0423_495963 -3.37 13.76 Chip2 T1D_4 T1D TGTGCAGCAGCGGAAACCTCCTACGACAAGCTGATATTT CAAAETSYDKLIF TRAV13-1*01 TRAJ50*01 2.0 9.0 TGTGCCAGCAGCCTGGCGCAGTATACCTTC CASSLAQYTF TRBV7-9*01 TRBJ1-2*01 15.0 1326.0 CAAAETSYDKLIF_CASSLAQYTF 1 4316 PGT-178 PGT 0.56 1480 NEG 122 4194 1 HomoSapiens PGT LLAGIGTVPI Naive T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*02:01 B2M MHCI -9834 chip0423_213608 11.2 9.93 Chip2 healthy_5 healthy _ 6746 3160 BZLF1-190-197 EBV 0.83 2156 NEG 90 3070 9 EBV BZLF1 RAKFKQLL effector memory T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-B*08:01 B2M MHCI -9835 chip0423_547778 13.19 7.53 Chip2 T1D_4 T1D TGTGCCCCTTCTCTGAATTCTGGGGGTTACCAGAAAGTTACCTTT CAPSLNSGGYQKVTF TRAV2*01 TRAJ13*01 1.0 13.0 TGTGCCAGCAGTGTAGTAGGGGGCGACCATGGCTACACCTTC CASSVVGGDHGYTF TRBV2*01 TRBJ1-2*01 15.0 873.0 CAPSLNSGGYQKVTF_CASSVVGGDHGYTF 1 3615 EBNA3A-193-201 EBV 0.4 1022 NEG 129 3486 10 EBV EBNA3A FLRGRAYGL effector memory T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-B*08:01 B2M MHCI -9836 chip0423_324062 -3.26 8.85 Chip2 T1D_4 T1D TGTGCCAGCACCAATACAGATACGCAGTATTTT CASTNTDTQYF TRBV11-3*01 TRBJ2-3*01 14.0 751.0 _CASTNTDTQYF 1 5467 IGRP-222-230 IGRP 0.76 10 IGRP-222-230 126 5341 2 HomoSapiens IGRP YLLLRVLNI Naive T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*02:01 B2M MHCI -9837 chip0423_111068 -3.68 11.36 Chip2 T1D_6 T1D TGTGCCCCCACCAGTGGCTCTAGGTTGACCTTT CAPTSGSRLTF TRAV20*01 TRAJ10*01 8.0 1349.0 TGCGCCAGCAGCTTCGGGCGCTATGAGCAGTTCTTC CASSFGRYEQFF TRBV5-1*01 TRBJ2-1*01 43.0 4376.0 CAPTSGSRLTF_CASSFGRYEQFF 1 3488 INS-LWM-8 INS 0.81 11 INS-LWM-8 100 3388 1 HomoSapiens INS LWMRLLPL Naive T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-B*08:01 B2M MHCI -9838 chip0423_489161 -4.3 8.48 Chip2 T1D_4 T1D TGTGCTCTGAGTGAGTTTGCTGAGGGAGGAAAGCTTATCTTC CALSEFAEGGKLIF TRAV19*01 TRAJ23*01 36.0 1670.0 TGTGCCAGCAGTTACGGCGGGGATCAGCCCCAGCATTTT CASSYGGDQPQHF TRBV6-2*01,TRBV6-3*01 TRBJ1-5*01 60.0 2557.0 CALSEFAEGGKLIF_CASSYGGDQPQHF 1 6065 IAPP-STN-9 IAPP 0.52 48 IAPP-STN-9 111 5954 2 HomoSapiens IAPP STNVGSNTY Naive T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*01:01 B2M MHCI -9839 chip0423_345318 6.69 11.72 Chip2 healthy_3 healthy TGCGCCAGCAGCCAAGATGGGTATCCGGCGGGAGAGGCGGCAGATACGCAGTATTTT CASSQDGYPAGEAADTQYF TRBV4-1*01 TRBJ2-3*01 28.0 747.0 _CASSQDGYPAGEAADTQYF 1 5167 NP44-52 FLU 0.73 474 NP44-52 106 5061 7 InfluenzaA NP CTELKLSDY transitional T cells between effector and memory populations PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*01:01 B2M MHCI -9840 chip0423_741638 -3.17 8.52 Chip2 T1D_5 T1D TGTGCAGGACCCGAGTATGGAGGAAGCCAAGGAAATCTCATCTTT CAGPEYGGSQGNLIF TRAV27*01 TRAJ42*01 30.0 1073.0 CAGPEYGGSQGNLIF_ 1 7897 G6PC2-NLI-8 IGRP 0.55 32 G6PC2-NLI-8 110 7787 2 HomoSapiens G6PC2 NLIFKWIL Naive T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-B*08:01 B2M MHCI -9841 chip0423_550109 -1.7 9.5 Chip2 T1D_5 T1D TGCGCTGTGGACGACTACAAGCTCAGCTTT CAVDDYKLSF TRAV1-1*01 TRAJ20*01 5.0 381.0 CAVDDYKLSF_ 1 5769 NP44-52 FLU 0.59 474 NP44-52 102 5667 3 InfluenzaA NP CTELKLSDY Naive T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*01:01 B2M MHCI -9842 chip0423_94428 -3.12 13.74 Chip2 T1D_6 T1D TGCGCCAGCAGCCGATCAATTCGGGGGACAGGTAAAGACTACGAGCAGTACTTC CASSRSIRGTGKDYEQYF TRBV4-1*01 TRBJ2-7*01 32.0 1119.0 _CASSRSIRGTGKDYEQYF 1 3843 LMP2A-CPL EBV 0.71 44 NEG 124 3719 1 EBV LMP2A CPLSKILL Naive T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-B*08:01 B2M MHCI -9843 chip0423_630970 5.63 12.48 Chip2 healthy_3 healthy _ 6746 5075 NP44-52 FLU 0.81 474 NP44-52 105 4970 7 InfluenzaA NP CTELKLSDY transitional T cells between effector and memory populations PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*01:01 B2M MHCI -9844 chip0423_575402 -4.07 8.95 Chip2 T1D_6 T1D TGTGCTACGGCCTCCGCTTCCGGGGGTTACCAGAAAGTTACCTTT CATASASGGYQKVTF TRAV17*01 TRAJ13*01 39.0 1227.0 TGTGCCAGCAGCGTAATGGCGGCGCCTAGCTACGAGCAGTACTTC CASSVMAAPSYEQYF TRBV9*01 TRBJ2-7*01 2.0 85.0 CATASASGGYQKVTF_CASSVMAAPSYEQYF 1 8251 GAD2-FQQ-9 GAD65 0.64 10 GAD2-FQQ-9 113 8138 2 HomoSapiens GAD2 FQQDKHYDL Naive T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-B*08:01 B2M MHCI -9845 chip0423_288282 12.43 12.98 Chip2 T1D_5 T1D TGTGCCCGCCGCTCCTTAAGCGGGGGGGCAGGACATGAGCAGTTCTTC CARRSLSGGAGHEQFF TRBV7-9*01 TRBJ2-1*01 5.0 533.0 _CARRSLSGGAGHEQFF 1 2128 BZLF1-190-197 EBV 0.56 2156 NEG 108 2020 11 EBV BZLF1 RAKFKQLL effector T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-B*08:01 B2M MHCI -9846 chip0423_783350 -2.8 13.69 Chip2 T1D_4 T1D TGCAGTGCTAGCGGGAGAGTTTTGGGCGGGGAGCTGTTTTTT CSASGRVLGGELFF TRBV20-1*01 TRBJ2-2*01 22.0 1271.0 _CSASGRVLGGELFF 1 3398 NP30-38 FLU 0.4 72 NEG 112 3286 1 InfluenzaA NP RPIIRPATL Naive T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-B*08:01 B2M MHCI -9847 chip0423_824191 10.49 6.86 Chip2 healthy_4 healthy TGCATCCTTCCCCTAGCTGGTGGTACTCGCTATGGAAAGCTGACATTT CILPLAGGTRYGKLTF TRAV26-2*01 TRAJ52*01 3.0 58.0 TGTGCCAGCAGCTCCGGACAGGCCTACGAGCAGTACTTC CASSSGQAYEQYF TRBV7-8*01 TRBJ2-7*01 16.0 1353.0 CILPLAGGTRYGKLTF_CASSSGQAYEQYF 2 5535 EBNA3A-193-201 EBV 0.83 1022 EBNA3A-193-201 133 5402 10 EBV EBNA3A FLRGRAYGL effector memory T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-B*08:01 B2M MHCI -9848 chip0423_14226 5.53 12.73 Chip2 healthy_3 healthy TGTGCAGGGGGGGATGGAGGAAGCCAAGGAAATCTCATCTTT CAGGDGGSQGNLIF TRAV25*01 TRAJ42*01 32.0 1977.0 TGTGCCAGTAGTACTCGTTCCACCGGGGAGCTGTGTTTT CASSTRSTGELCF TRBV19*01 TRBJ2-2*01 16.0 936.0 CAGGDGGSQGNLIF_CASSTRSTGELCF 1 5849 M1 FLU 0.64 1250 NEG 116 5733 7 InfluenzaA M1 GILGFVFTL transitional T cells between effector and memory populations PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*02:01 B2M MHCI -9849 chip0423_419917 -4.01 10.38 Chip2 T1D_6 T1D _ 6746 4801 ZNT8-PTE-9 ZNT8 0.7 18 ZNT8-PTE-9 111 4690 2 HomoSapiens ZNT8 PTEKGANEY Naive T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*01:01 B2M MHCI -9850 chip0423_330723 -2.39 8.59 Chip2 healthy_4 healthy TGTGCCATGAGGAGAGAGGGCGGTTCTGAAAAGCTGGTCTTT CAMRREGGSEKLVF TRAV14/DV4*01 TRAJ57*01 4.0 169.0 TGTGCCAGCAGTTTAATCGGATCGCCGAATCAGCCCCAGCATTTT CASSLIGSPNQPQHF TRBV28*01 TRBJ1-5*01 30.0 1348.0 CAMRREGGSEKLVF_CASSLIGSPNQPQHF 1 5062 EBV-LMP1-1 EBV 1.0 237 NEG 115 4947 2 EBV LMP1 YLLEMLWRL Naive T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*02:01 B2M MHCI -9851 chip0423_73662 -1.46 6.92 Chip2 healthy_4 healthy TGCGCCAGCAGCTTGCCCTTCGGGATCGAACCCCAGCATTTT CASSLPFGIEPQHF TRBV5-1*01 TRBJ1-5*01 3.0 122.0 _CASSLPFGIEPQHF 1 6896 G6PC2-YLK-8 IGRP 0.83 27 G6PC2-YLK-8 108 6788 3 HomoSapiens G6PC2 YLKTNLFL Naive T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-B*08:01 B2M MHCI -9852 chip0423_84690 7.3 13.55 Chip2 healthy_4 healthy TGTGCCAGTAGTATGATGGGTTCGGGCTACAATGAGCAGTTCTTC CASSMMGSGYNEQFF TRBV19*01 TRBJ2-1*01 11.0 636.0 _CASSMMGSGYNEQFF 15 2308 M1 FLU 0.83 1250 NEG 90 2218 6 InfluenzaA M1 GILGFVFTL central memory T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*02:01 B2M MHCI -9853 chip0423_873875 11.25 12.02 Chip2 T1D_5 T1D TGTGCTCTGAGTGAGGGTGACATGCGCTTT CALSEGDMRF TRAV9-2*01 TRAJ43*01 11.0 1665.0 TGTGCCAGCAGCTTAGTTCAGGGGGCCGAGCAGTACTTC CASSLVQGAEQYF TRBV7-3*01 TRBJ2-7*01 10.0 626.0 CALSEGDMRF_CASSLVQGAEQYF 1 2278 BZLF1-190-197 EBV 1.0 2156 NEG 131 2147 9 EBV BZLF1 RAKFKQLL effector memory T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-B*08:01 B2M MHCI -9854 chip0423_788979 -3.24 11.09 Chip2 T1D_4 T1D TGTGCCAGCAGTTTGGGGCAGTTGAACACTGAAGCTTTCTTT CASSLGQLNTEAFF TRBV27*01 TRBJ1-1*01 10.0 551.0 _CASSLGQLNTEAFF 1 4742 ZNT8-221-229 ZNT8 0.83 4 NEG 101 4641 1 HomoSapiens ZNT8 ALGDLFQSI Naive T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*02:01 B2M MHCI -9855 chip0423_590993 -2.72 8.8 Chip2 healthy_4 healthy TGTGCCGTGCGGGCAGGCAAATCAACCTTT CAVRAGKSTF TRAV12-2*01 TRAJ27*01 4.0 399.0 TGCAGCGTTGGTGGGGGGCTGGGTGGCTACACCTTC CSVGGGLGGYTF TRBV29-1*01 TRBJ1-2*01 28.0 2364.0 CAVRAGKSTF_CSVGGGLGGYTF 1 5882 ROTA-VP2-1 ROTA 0.83 17 NEG 93 5789 2 RotavirusA VP2 SLISGMWLL Naive T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*02:01 B2M MHCI -9856 chip0423_763305 13.94 10.01 Chip2 T1D_4 T1D TGTGCCAGCCGCTTAACGGTTCTGGCAGGTCCAAACACTGAAGCTTTCTTT CASRLTVLAGPNTEAFF TRBV7-3*01 TRBJ1-1*01 4.0 12.0 _CASRLTVLAGPNTEAFF 1 3781 BZLF1-190-197 EBV 0.85 2156 BZLF1-190-197 123 3658 12 EBV BZLF1 RAKFKQLL effector T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-B*08:01 B2M MHCI -9857 chip0423_637710 -2.75 13.13 Chip2 T1D_4 T1D TGTGCCAGCAGTTTATTTCAGGGAGCGGCACCCTACGAGCAGTACTTC CASSLFQGAAPYEQYF TRBV27*01 TRBJ2-7*01 25.0 1737.0 _CASSLFQGAAPYEQYF 1 4368 PGT-178 PGT 0.45 1480 NEG 127 4241 1 HomoSapiens PGT LLAGIGTVPI Naive T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*02:01 B2M MHCI -9858 chip0423_632699 -1.96 7.22 Chip2 healthy_3 healthy TGTGCCAGCAGATCCCCCGGGACTAGCGGAGTTTACGAGCAGTACTTC CASRSPGTSGVYEQYF TRBV28*01 TRBJ2-7*01 32.0 1311.0 _CASRSPGTSGVYEQYF 1 6003 MART1-ALA MART1 0.54 269 NEG 126 5877 3 HomoSapiens MART1 ALAGIGILTV Naive T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*02:01 B2M MHCI -9859 chip0423_197834 -2.8 14.87 Chip2 T1D_4 T1D TGTGCCGTGTCAAACTGGGATAGCAGCTATAAATTGATCTTC CAVSNWDSSYKLIF TRAV12-2*01 TRAJ12*01 104.0 4578.0 TGTGCCAGCAGCTTCGGACAGGAGGGACTCCTCGAGCAGTACTTC CASSFGQEGLLEQYF TRBV7-2*01 TRBJ2-7*01 38.0 1504.0 CAVSNWDSSYKLIF_CASSFGQEGLLEQYF 1 2849 EBV-LMP2A EBV 0.5 700 NEG 127 2722 1 EBV LMP2A CLGGLLTMV Naive T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*02:01 B2M MHCI -9860 chip0423_173847 -2.15 10.17 Chip2 healthy_5 healthy TGTGCCAGCAGCGACCGGGATAGTGTCTATGGCTACACCTTC CASSDRDSVYGYTF TRBV5-6*01 TRBJ1-2*01 24.0 985.0 _CASSDRDSVYGYTF 1 5770 NP44-52 FLU 0.94 474 NP44-52 108 5662 3 InfluenzaA NP CTELKLSDY Naive T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*01:01 B2M MHCI -9861 chip0423_715342 -3.48 11.71 Chip2 healthy_3 healthy TGTGCCGTGAACACCAATAACAATGACATGCGCTTT CAVNTNNNDMRF TRAV12-2*01 TRAJ43*01 21.0 2011.0 TGTGCCAGCAGCACACCGCCGGCCGGGACAGTGAATGAAAAACTGTTTTTT CASSTPPAGTVNEKLFF TRBV11-3*01 TRBJ1-4*01 7.0 114.0 CAVNTNNNDMRF_CASSTPPAGTVNEKLFF 1 4161 PREINS-2-10 INS 0.68 37 PREINS-2-10 95 4066 1 HomoSapiens PREINS ALWMRLLPL Naive T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*02:01 B2M MHCI -9862 chip0423_288229 5.78 10.88 Chip2 T1D_6 T1D TGCATCCTCCCACTTGCTGGTGGTACTAGCTATGGAAAGCTGACATTT CILPLAGGTSYGKLTF TRAV26-2*01 TRAJ52*01 2.0 61.0 CILPLAGGTSYGKLTF_ 55 7697 EBNA3A-193-201 EBV 0.7 1022 EBNA3A-193-201 117 7580 6 EBV EBNA3A FLRGRAYGL central memory T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-B*08:01 B2M MHCI -9863 chip0423_181780 -3.4 9.1 Chip2 T1D_5 T1D TGTGGGGCGAACTCAGGAACCTACAAATACATCTTT CGANSGTYKYIF TRAV13-2*01 TRAJ40*01 14.0 1120.0 TGTGCCAGCAGCCCTCAAACCGGGCCCGTGTTT CASSPQTGPVF TRBV7-9*01 TRBJ1-4*01 4.0 227.0 CGANSGTYKYIF_CASSPQTGPVF 1 4911 GFAP-HLK-8 GFAP 0.45 28 NEG 112 4799 2 HomoSapiens GFAP HLKRNIVV Naive T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-B*08:01 B2M MHCI -9864 chip0423_497357 10.53 11.47 Chip2 healthy_4 healthy _ 6746 3533 BZLF1-190-197 EBV 0.92 2156 NEG 120 3413 9 EBV BZLF1 RAKFKQLL effector memory T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-B*08:01 B2M MHCI -9865 chip0423_474571 11.39 8.11 Chip2 T1D_4 T1D TGTGCTGTGAGTGATGGAGAAGGAGCCCAGAAGCTGGTATTT CAVSDGEGAQKLVF TRAV8-6*01 TRAJ54*01 1.0 18.0 TGTGCCAGCAGCTTAACGGTTCTGGCAGGTCCAAACACTGAAGCTTTCTTT CASSLTVLAGPNTEAFF TRBV7-3*01 TRBJ1-1*01 72.0 2256.0 CAVSDGEGAQKLVF_CASSLTVLAGPNTEAFF 44 3613 BZLF1-190-197 EBV 0.89 2156 BZLF1-190-197 127 3486 10 EBV BZLF1 RAKFKQLL effector memory T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-B*08:01 B2M MHCI -9866 chip0423_464762 -0.41 8.21 Chip2 T1D_5 T1D TGTGCCAGCAGTTACTCGACCCAGGGGGCGAGCGAGCAGTACTTC CASSYSTQGASEQYF TRBV6-5*01 TRBJ2-7*01 56.0 1765.0 _CASSYSTQGASEQYF 1 7822 G6PC2-NLI-8 IGRP 0.48 32 NEG 123 7699 4 HomoSapiens G6PC2 NLIFKWIL Naive T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-B*08:01 B2M MHCI -9867 chip0423_42760 -0.1 6.62 Chip2 T1D_4 T1D TGTGCCGCAAGTAAGGGGAGCCCAGAAGCTGGTATTT CAASKG??aAQKLVF TRAV13-1*01 TRAJ54*01 29.0 2083.0 TGTGCCAGCAGTTTCAGTCAGCCCCAGCATTTT CASSFSQPQHF TRBV28*01 TRBJ1-5*01 55.0 3763.0 CAASKG??aAQKLVF_CASSFSQPQHF 1 12146 ROTA-VP6 ROTA 0.58 47 ROTA-VP6 110 12036 3 RotavirusA VP6 TLLANVTAV Naive T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*02:01 B2M MHCI -9868 chip0423_532660 10.2 8.71 Chip2 healthy_5 healthy TGTGCCAGCAGCCCCAAAGCATCCTTGAGGGCGGAGCAGTACTTC CASSPKASLRAEQYF TRBV3-1*01 TRBJ2-7*01 20.0 993.0 _CASSPKASLRAEQYF 1 4423 BZLF1-190-197 EBV 1.0 2156 BZLF1-190-197 100 4323 10 EBV BZLF1 RAKFKQLL effector memory T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-B*08:01 B2M MHCI -9869 chip0423_806586 9.35 8.36 Chip2 T1D_5 T1D TGTGCCAGCAGCCGCCTCGGGGGTTCCTTGGGTGGCTACACCTTC CASSRLGGSLGGYTF TRBV7-9*01 TRBJ1-2*01 31.0 1642.0 _CASSRLGGSLGGYTF 1 4580 BZLF1-190-197 EBV 0.95 2156 BZLF1-190-197 124 4456 8 EBV BZLF1 RAKFKQLL effector memory T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-B*08:01 B2M MHCI -9870 chip0423_775865 15.23 12.17 Chip2 healthy_3 healthy _ 6746 2633 GAD65-114-122 GAD65 0.53 63 NEG 106 2527 12 HomoSapiens GAD65 VMNILLQYV effector T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*02:01 B2M MHCI -9871 chip0423_360323 11.52 7.35 Chip2 T1D_5 T1D TGTGCCCGCCGTCAAGCCCCGCGGCCGCAGGGTGTTCAGCCCCAGCATTTT CARRQAPRPQGVQPQHF TRBV6-2*01,TRBV6-3*01 TRBJ1-5*01 3.0 55.0 _CARRQAPRPQGVQPQHF 1 4613 BZLF1-190-197 EBV 0.74 2156 BZLF1-190-197 121 4492 10 EBV BZLF1 RAKFKQLL effector memory T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-B*08:01 B2M MHCI -9872 chip0423_467338 -4.27 12.14 Chip2 T1D_6 T1D TGTGCAATGAGAGACCGGCATCCCGGCCACACACCCCTTGTCTTT CAMRDRHPGHTPLVF TRAV14/DV4*01 TRAJ29*01 25.0 721.0 CAMRDRHPGHTPLVF_ 1 5000 ZNT8-YAY-8 ZNT8 0.41 54 NEG 102 4898 1 HomoSapiens ZNT8 YAYAKWKL Naive T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-B*08:01 B2M MHCI -9873 chip0423_161739 -2.62 14.42 Chip2 T1D_6 T1D TGTGCAATGAGTATTTCTAACTTTGGAAATGAGAAATTAACCTTT CAMSISNFGNEKLTF TRAV12-3*01 TRAJ48*01 2.0 24.0 TGCGCCCAGCTACCGGGGCTCCAAGGGACAAGAGACCCAGTACTTC CAQLPGLca??agGQETQYF TRBV5-1*01 TRBJ2-5*01 38.0 1401.0 CAMSISNFGNEKLTF_CAQLPGLca??agGQETQYF 1 2624 PGT-178 PGT 0.67 1480 NEG 109 2515 1 HomoSapiens PGT LLAGIGTVPI Naive T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*02:01 B2M MHCI -9874 chip0423_652488 7.21 12.39 Chip2 healthy_3 healthy TGTGCTTTCATGAAGCTTACCTACAATAACAATGACATGCGCTTT CAFMKLTYNNNDMRF TRAV38-1*01 TRAJ43*01 19.0 580.0 TGTGCAATCACTACGCAATGCTGGTGGTACTAGCTATGGAAAGCTGACATTT CAITTQCWtg??gtTSYGKLTF TRAV14/DV4*01 TRAJ52*01 45.0 1307.0 0.56 TGCAGTGCTGCCGGCTACAGGGGGCCATATGGCTACACCTTC CSAAGYRGPYGYTF TRBV20-1*01 TRBJ1-2*01 16.0 479.0 CAFMKLTYNNNDMRF_CSAAGYRGPYGYTF 1 5654 NP44-52 FLU 0.78 474 NEG 110 5544 7 InfluenzaA NP CTELKLSDY transitional T cells between effector and memory populations PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*01:01 B2M MHCI -9875 chip0423_239539 4.99 10.94 Chip2 healthy_4 healthy TGTGCTACTCCTACGGTGTCTACTGGAGCCAATAGTAAGCTGACATTT CATPTVSTGANSKLTF TRAV17*01 TRAJ56*01 61.0 1981.0 CATPTVSTGANSKLTF_ 3 4737 M1 FLU 0.8 1250 NEG 125 4612 6 InfluenzaA M1 GILGFVFTL central memory T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*02:01 B2M MHCI -9876 chip0423_222957 9.54 12.26 Chip2 T1D_5 T1D _ 6746 3867 BZLF1-190-197 EBV 0.62 2156 NEG 117 3750 7 EBV BZLF1 RAKFKQLL transitional T cells between effector and memory populations PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-B*08:01 B2M MHCI -9877 chip0423_838654 13.06 13.2 Chip2 T1D_5 T1D TGTGCCAGCAGCTTAGTAATGGGCAATGAGCAGTTCTTC CASSLVMGNEQFF TRBV7-2*01 TRBJ2-1*01 28.0 1432.0 _CASSLVMGNEQFF 2 2062 BZLF1-190-197 EBV 0.8 2156 NEG 120 1942 11 EBV BZLF1 RAKFKQLL effector T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-B*08:01 B2M MHCI -9878 chip0423_759553 -2.89 12.38 Chip2 T1D_6 T1D TGTGCTGTGACCAACACCGGTAACCAGTTCTATTTT CAVTNTGNQFYF TRAV8-6*01 TRAJ49*01 1.0 55.0 TGCAGTGCTTCCGACAGGGAGCACTACAATGAGCAGTTCTTC CSASDREHYNEQFF TRBV20-1*01 TRBJ2-1*01 41.0 2888.0 CAVTNTGNQFYF_CSASDREHYNEQFF 1 4171 ZNT8-115-123 ZNT8 0.82 74 NEG 114 4057 1 HomoSapiens ZNT8 LLSLFSLWL Naive T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*02:01 B2M MHCI -9879 chip0423_60422 13.65 7.74 Chip2 T1D_5 T1D TGCGCCAGCAGCCCCTGGGCCACCTCCTACGAGCAGTACTTC CASSPWATSYEQYF TRBV4-1*01 TRBJ2-7*01 1.0 29.0 _CASSPWATSYEQYF 2 2765 BZLF1-190-197 EBV 0.69 2156 NEG 127 2638 10 EBV BZLF1 RAKFKQLL effector memory T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-B*08:01 B2M MHCI -9880 chip0423_599436 -3.1 14.26 Chip2 T1D_4 T1D TGTGCCAGCAGCTACAGGGAGCAGGTCAGAACCGGGGAGCTGTTTTTT CASSYREQVRTGELFF TRBV13*01 TRBJ2-2*01 44.0 1989.0 _CASSYREQVRTGELFF 1 3361 MART1-A28L MART1 0.62 84 NEG 88 3273 1 HomoSapiens MART1 ALGIGILTV Naive T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*02:01 B2M MHCI -9881 chip0423_291415 -4.91 10.21 Chip2 healthy_3 healthy _ 6746 4003 PGT-178 PGT 0.67 1480 NEG 125 3878 2 HomoSapiens PGT LLAGIGTVPI Naive T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*02:01 B2M MHCI -9882 chip0423_468285 -4.43 8.18 Chip2 T1D_4 T1D TGTGCAATGAGCGGATCTAACTTTGGACATGAGAAATTAACCTTT CAMSGSNFGHEKLTF TRAV12-3*01 TRAJ48*01 50.0 1523.0 CAMSGSNFGHEKLTF_ 1 7470 PGT-178 PGT 0.5 1480 NEG 119 7351 2 HomoSapiens PGT LLAGIGTVPI Naive T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*02:01 B2M MHCI -9883 chip0423_52786 6.68 11.43 Chip2 healthy_3 healthy TGTGCCAGCAGTTTCAGACGACTACAATGAGCAGTTCTTC CASSFRcg??acYNEQFF TRBV28*01 TRBJ2-1*01 13.0 705.0 _CASSFRcg??acYNEQFF 1 6646 NP44-52 FLU 0.7 474 NP44-52 120 6526 7 InfluenzaA NP CTELKLSDY transitional T cells between effector and memory populations PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*01:01 B2M MHCI -9884 chip0423_222693 12.87 9.81 Chip2 T1D_5 T1D TGTGCAGAGATGGAAACCTCCTACGACAAGGTGATATTT CAEMETSYDKVIF TRAV13-2*01 TRAJ50*01 29.0 2070.0 TGTGCCAGCAGTGGGGACATATCCTACAATGAGCAGTTCTTC CASSGDISYNEQFF TRBV2*01 TRBJ2-1*01 4.0 248.0 CAEMETSYDKVIF_CASSGDISYNEQFF 1 3349 BZLF1-190-197 EBV 0.79 2156 NEG 121 3228 10 EBV BZLF1 RAKFKQLL effector memory T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-B*08:01 B2M MHCI -9885 chip0423_351175 10.44 10.05 Chip2 healthy_3 healthy TGTGCCACCCCGTGCGGGGGCGGGCACACTGTTTTTT CATPCG??gAGTLFF TRBV19*01 TRBJ1-4*01 6.0 437.0 _CATPCG??gAGTLFF 1 4915 EBV-BRLF1 EBV 0.68 1264 EBV-BRLF1 113 4802 9 EBV BRLF1 YVLDHLIVV effector memory T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*02:01 B2M MHCI -9886 chip0423_526341 -2.82 9.93 Chip2 T1D_6 T1D _ 6746 5981 PGT-178 PGT 0.77 1480 PGT-178 135 5846 2 HomoSapiens PGT LLAGIGTVPI Naive T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*02:01 B2M MHCI -9887 chip0423_100078 -3.65 13.21 Chip2 T1D_4 T1D TGTGCTACGGACGACGACTACAAGCTCAGCTTT CATDDDYKLSF TRAV17*01 TRAJ20*01 2.0 338.0 TGTGCCAGCAGTGAAGGGGGGCTAGCCCCCTACGAGCAGTACTTC CASSEGGLAPYEQYF TRBV2*01 TRBJ2-7*01 12.0 714.0 CATDDDYKLSF_CASSEGGLAPYEQYF 1 3516 G6PC2-NLI-8 IGRP 0.75 32 NEG 118 3398 1 HomoSapiens G6PC2 NLIFKWIL Naive T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-B*08:01 B2M MHCI -9888 chip0423_496263 12.37 6.66 Chip2 T1D_4 T1D TGTGCCAGCAGCCCCGGGGAGACGCGCGGCGAGCAGTACTTC CASSPGETRGEQYF TRBV5-6*01 TRBJ2-7*01 3.0 206.0 _CASSPGETRGEQYF 1 3188 EBV-LMP1-1 EBV 0.86 237 NEG 143 3045 10 EBV LMP1 YLLEMLWRL effector memory T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*02:01 B2M MHCI -9889 chip0423_759466 11.88 13.01 Chip2 healthy_4 healthy _ 6746 1496 BZLF1-190-197 EBV 1.0 2156 NEG 112 1384 11 EBV BZLF1 RAKFKQLL effector T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-B*08:01 B2M MHCI -9890 chip0423_97567 11.82 7.23 Chip2 T1D_5 T1D TGTGCCAGCAGCCCTCTTGGGAGCAATGAAAAACTGTTTTTT CASSPLGSNEKLFF TRAV36/DV7*01 TRAJ5*01 1.0 23.0 TGTGCCAGCAGCCCTCTTGGGAGCAATGAAAAACTGTTTTTT CASSPLGSNEKLFF TRBV7-9*01 TRBJ1-4*01 16.0 569.0 CASSPLGSNEKLFF_CASSPLGSNEKLFF 4 3795 BZLF1-190-197 EBV 0.9 2156 NEG 111 3684 10 EBV BZLF1 RAKFKQLL effector memory T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-B*08:01 B2M MHCI -9891 chip0423_164803 14.7 13.13 Chip2 healthy_3 healthy TGTGCTTCGGACTGGAGCGACCAGTGGCTCTAGGTTGACCTTT CASDWSD??cSGSRLTF TRAV17*01 TRAJ10*01 4.0 88.0 CASDWSD??cSGSRLTF_ 1 1554 M1 FLU 0.43 1250 NEG 100 1454 12 InfluenzaA M1 GILGFVFTL effector T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*02:01 B2M MHCI -9892 chip0423_178041 -0.85 8.76 Chip2 T1D_6 T1D TGTGCTGTGGGTTCCCATACTGGAGGCTTCAAAACTATCTTT CAVGSHTGGFKTIF TRAV20*01 TRAJ9*01 33.0 1188.0 TGTGCCAGCTCACCACCGGAATTCGTGGATACGCAGTATTTT CASSPPEFVDTQYF TRBV18*01 TRBJ2-3*01 52.0 2199.0 CAVGSHTGGFKTIF_CASSPPEFVDTQYF 1 6677 ZNT8-141-149 ZNT8 0.67 5 NEG 125 6552 4 HomoSapiens ZNT8 ILGALLSIL Naive T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*02:01 B2M MHCI -9893 chip0423_146826 7.25 13.94 Chip2 healthy_3 healthy TGTGCAGAGACGGGATCTAACCAGGCAGGCACTGCTCTGATCTTT CAETGSNQAGTALIF TRAV13-2*01 TRAJ15*01 45.0 2043.0 TGCGCCAGCAGCCAAGATGGGTACGGGGGGGATCAGCCCCAGCATTTT CASSQDGYGGDQPQHF TRBV4-1*01 TRBJ1-5*01 31.0 1052.0 CAETGSNQAGTALIF_CASSQDGYGGDQPQHF 3 4103 NP44-52 FLU 0.62 474 NP44-52 113 3990 7 InfluenzaA NP CTELKLSDY transitional T cells between effector and memory populations PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*01:01 B2M MHCI -9894 chip0423_474264 -1.25 10.1 Chip2 healthy_4 healthy TGTGGGACATCCGGGGGTTACCAGAAAGTTACCTTT CGTSGGYQKVTF TRAV12-1*01 TRAJ13*01 15.0 1852.0 CGTSGGYQKVTF_ 1 5011 PGT-178 PGT 0.44 1480 PGT-178 108 4903 3 HomoSapiens PGT LLAGIGTVPI Naive T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*02:01 B2M MHCI -9895 chip0423_470236 8.52 11.51 Chip2 T1D_5 T1D TGTGCCAGCAGCTTAATTGGGTCCGGGACACCAGGGAACACTGAAGCTTTCTTT CASSLIGSGTPGNTEAFF TRBV11-1*01 TRBJ1-1*01 66.0 2415.0 _CASSLIGSGTPGNTEAFF 2 4495 BZLF1-190-197 EBV 0.62 2156 BZLF1-190-197 123 4372 7 EBV BZLF1 RAKFKQLL transitional T cells between effector and memory populations PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-B*08:01 B2M MHCI -9896 chip0423_248114 -2.32 7.24 Chip2 healthy_3 healthy TGTGCCGTGAAGACGGGGGGTTACCAGAAAGTTACCTTT CAVKTGGYQKVTF TRAV12-2*01 TRAJ13*01 13.0 1003.0 CAVKTGGYQKVTF_ 1 6815 PGT-178 PGT 0.73 1480 NEG 109 6706 3 HomoSapiens PGT LLAGIGTVPI Naive T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*02:01 B2M MHCI -9897 chip0423_234985 -3.76 10.82 Chip2 healthy_3 healthy TGTGCCAGCAGCTTGCCTCTAGCCGGGGAGCTGTTTTTT CASSLPLAGELFF TRBV5-6*01 TRBJ2-2*01 23.0 1348.0 _CASSLPLAGELFF 1 4711 PGT-178 PGT 0.7 1480 NEG 103 4608 4 HomoSapiens PGT LLAGIGTVPI Naive T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*02:01 B2M MHCI -9898 chip0423_38666 8.13 10.72 Chip2 T1D_5 T1D CTGTGCCCGCCCCCTCGCGGGCGGCCCCGGGGAGCTGTTTTTT LCPPPRG??cGPGELFF TRBV24-1*01 TRBJ2-2*01 7.0 173.0 _LCPPPRG??cGPGELFF 1 4008 BZLF1-190-197 EBV 0.61 2156 NEG 117 3891 7 EBV BZLF1 RAKFKQLL transitional T cells between effector and memory populations PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-B*08:01 B2M MHCI -9899 chip0423_717412 4.74 10.46 Chip2 T1D_6 T1D _ 6746 3153 NP140-148 FLU 0.8 102 NEG 112 3041 6 InfluenzaA NP HSNLNDATY central memory T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*01:01 B2M MHCI -9900 chip0423_405023 7.71 12.57 Chip2 healthy_3 healthy TGCGCTGATTACAGCAGTGCTTCCAAGATAATCTTT CADYSSASKIIF TRAV1-1*01 TRAJ3*01 10.0 844.0 TGCGCCAGCAGCCAAGATGGACTAGCGGCAACTAGCACAGATACGCAGTATTTT CASSQDGLAATSTDTQYF TRBV4-1*01 TRBJ2-3*01 18.0 625.0 CADYSSASKIIF_CASSQDGLAATSTDTQYF 4 3361 NP44-52 FLU 0.5 474 NEG 115 3246 7 InfluenzaA NP CTELKLSDY transitional T cells between effector and memory populations PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*01:01 B2M MHCI -9901 chip0423_384039 10.11 9.87 Chip2 T1D_5 T1D TGCAGCGCACTAGCGGGGGAGCCTGGGGGTGGGGCCCAGTACTTC CSALAGEPGGGAQYF TRBV29-1*01 TRBJ2-5*01 96.0 6258.0 _CSALAGEPGGGAQYF 1 4553 BZLF1-190-197 EBV 0.91 2156 NEG 104 4449 9 EBV BZLF1 RAKFKQLL effector memory T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-B*08:01 B2M MHCI -9902 chip0423_228833 13.17 11.68 Chip2 T1D_4 T1D TGCGCTAACTACCACACCTCAGGGCGGGTATGAAGAGCTGGTTTTT CANYHTSgg??gcGYEELVF TRAV38-2/DV8*01 TRAJ57*01 3.0 267.0 CANYHTSgg??gcGYEELVF_ 1 2986 BZLF1-190-197 EBV 0.82 2156 NEG 99 2887 9 EBV BZLF1 RAKFKQLL effector memory T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-B*08:01 B2M MHCI -9903 chip0423_822534 11.14 10.83 Chip2 T1D_4 T1D TGTGCCAGCAGCAGAATCCCGGGCCAGGGGGCCCGACCGGATCCGAACACCGGGGAGCTGTTTTTT CASSRIPGQGARPDPNTGELFF TRBV28*01 TRBJ2-2*01 3.0 37.0 _CASSRIPGQGARPDPNTGELFF 6 4424 EBV-LMP2A EBV 0.83 700 NEG 129 4295 9 EBV LMP2A CLGGLLTMV effector memory T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*02:01 B2M MHCI -9904 chip0423_218165 15.17 11.95 Chip2 T1D_5 T1D TGTGCCAGCAGCTCCTTAAGCGGGGGGGCAGGAAATGAGCAGTTCTTC CASSSLSGGAGNEQFF TRBV7-9*01 TRBJ2-1*01 6.0 507.0 _CASSSLSGGAGNEQFF 33 3467 BZLF1-190-197 EBV 0.5 2156 NEG 116 3351 12 EBV BZLF1 RAKFKQLL effector T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-B*08:01 B2M MHCI -9905 chip0423_753195 -3.9 12.19 Chip2 T1D_6 T1D TGTGCCAGCATGTATGGGACAGGGGGCGTCTACAATGAGCAGTTCTTC CASMYGTGGVYNEQFF TRBV6-1*01 TRBJ2-1*01 52.0 1867.0 _CASMYGTGGVYNEQFF 1 4434 BZLF1-190-197 EBV 0.75 2156 NEG 120 4314 1 EBV BZLF1 RAKFKQLL Naive T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-B*08:01 B2M MHCI -9906 chip0423_106105 8.42 9.73 Chip2 healthy_3 healthy TGCGCCAGCAGCCAAGATGGGTACGGGGGGGATCAGCCCCAGCATTTT CASSQDGYGGDQPQHF TRBV4-1*01 TRBJ1-5*01 10.0 199.0 _CASSQDGYGGDQPQHF 4 5575 NP44-52 FLU 0.75 474 NP44-52 109 5466 8 InfluenzaA NP CTELKLSDY effector memory T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*01:01 B2M MHCI -9907 chip0423_685883 -3.51 11.2 Chip2 T1D_5 T1D TGTGCCACCAGTGAACAGGGAAACACCATATATTTT CATSEQGNTIYF TRBV24-1*01 TRBJ1-3*01 10.0 453.0 _CATSEQGNTIYF 1 3566 G6PC2-LTS-10 IGRP 0.59 59 NEG 119 3447 1 HomoSapiens G6PC2 LTSLTILQLY Naive T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*01:01 B2M MHCI -9908 chip0423_623545 6.88 11.54 Chip2 healthy_3 healthy TGTGCCCCTGCATCAGGAGGAAGCTACATACCTACATTT CAPASGGSYIPTF TRAV24*01 TRAJ6*01 84.0 8342.0 TGTGCCAGCTGCCGGGACGGGACCTACGAGCAGTACTTC CASCRDGTYEQYF TRBV10-3*01 TRBJ2-7*01 18.0 1315.0 CAPASGGSYIPTF_CASCRDGTYEQYF 10 8020 NP44-52 FLU 0.81 474 NP44-52 108 7912 7 InfluenzaA NP CTELKLSDY transitional T cells between effector and memory populations PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*01:01 B2M MHCI -9909 chip0423_687623 11.07 10.87 Chip2 healthy_4 healthy TGTGCTGTGGAGGATCAAGGGAGATCTTATAACACCGACAAGCTCATCTTT CAVEDQGRSYNTDKLIF TRAV2*01 TRAJ34*01 114.0 2161.0 CAVEDQGRSYNTDKLIF_ 15 2666 BZLF1-190-197 EBV 0.57 2156 NEG 101 2565 9 EBV BZLF1 RAKFKQLL effector memory T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-B*08:01 B2M MHCI -9910 chip0423_681817 10.23 9.31 Chip2 healthy_4 healthy TGTGCCAGCAGCTCCGGACAGGCCTACGAGCAGTACTTC CASSSGQAYEQYF TRBV7-8*01 TRBJ2-7*01 7.0 358.0 _CASSSGQAYEQYF 49 4315 EBNA3A-193-201 EBV 0.95 1022 EBNA3A-193-201 114 4201 9 EBV EBNA3A FLRGRAYGL effector memory T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-B*08:01 B2M MHCI -9911 chip0423_496729 -2.84 8.65 Chip2 healthy_4 healthy TGTCTGGTTAGCGCCAGGAACCGGCTTTAAGACTCTTGTCTTT CLVSARN??cGFKTLVF TRAV10*01 TRAJ8*01 6.0 681.0 CLVSARN??cGFKTLVF_ 1 5948 ROTA-VP6 ROTA 0.62 47 NEG 108 5840 2 RotavirusA VP6 TLLANVTAV Naive T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*02:01 B2M MHCI -9912 chip0423_336528 6.9 10.62 Chip2 healthy_3 healthy TGTGCAGGGGCTCTGGGTGGGGGGAGCCAAGGAAATATCATCTTT CAGALGGGSQGNIIF TRAV27*01 TRAJ42*01 33.0 1180.0 CAGALGGGSQGNIIF_ 1 7478 M1 FLU 0.76 1250 M1 113 7365 7 InfluenzaA M1 GILGFVFTL transitional T cells between effector and memory populations PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*02:01 B2M MHCI -9913 chip0423_520098 10.27 6.91 Chip2 T1D_5 T1D TGTGCCAGCAGCTTCACATCCAGCGGGGGGGTGGAGCAGTTCTTC CASSFTSSGGVEQFF TRBV7-9*01 TRBJ2-1*01 13.0 389.0 _CASSFTSSGGVEQFF 3 6125 BZLF1-190-197 EBV 0.41 2156 NEG 128 5997 10 EBV BZLF1 RAKFKQLL effector memory T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-B*08:01 B2M MHCI -9914 chip0423_300230 6.82 13.78 Chip2 T1D_6 T1D TGTGCTGGAGTTTTCGGCTCTCGCAACACAGGCAAACTAATCTTT CAGVFGSRNTGKLIF TRAV27*01 TRAJ37*01 27.0 629.0 CAGVFGSRNTGKLIF_ 1 3417 M1 FLU 0.67 1250 NEG 107 3310 7 InfluenzaA M1 GILGFVFTL transitional T cells between effector and memory populations PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*02:01 B2M MHCI -9915 chip0423_168483 10.51 7.29 Chip2 healthy_4 healthy TGCATCCTTCCCCTAGCTGGTGGTACTAGCTATGGAAAGCTGACATTT CILPLAGGTSYGKLTF TRAV26-2*01 TRAJ52*01 34.0 1964.0 TGTGCCAGCAGCTCCGGACAGGCCTACGAGCAGTACTTC CASSSGQAYEQYF TRBV7-8*01 TRBJ2-7*01 12.0 656.0 CILPLAGGTSYGKLTF_CASSSGQAYEQYF 40 5110 EBNA3A-193-201 EBV 0.75 1022 NEG 127 4983 10 EBV EBNA3A FLRGRAYGL effector memory T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-B*08:01 B2M MHCI -9916 chip0423_95124 16.0 11.63 Chip2 T1D_5 T1D TGTGCAATGAGGGCCATTGAGGGGGCAAACAACCTCTTCCTT CAMRAIEGANNLFL TRAV14/DV4*01 TRAJ36*01 24.0 1103.0 TGTGCAATGAGAGTAGGGAAAGGGTTACCAGAAAGTTACCTTT CAMRVGK??gGYQKVTF TRAV14/DV4*01 TRAJ13*01 48.0 2539.0 0.53 CAMRAIEGANNLFL_ 1 2539 BZLF1-190-197 EBV 0.41 2156 NEG 110 2429 12 EBV BZLF1 RAKFKQLL effector T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-B*08:01 B2M MHCI -9917 chip0423_101543 -2.36 9.88 Chip2 T1D_6 T1D TGTGCAATGACCCGACCTAACTTTGGATATGAGGAGTTTCCCTTT CAMTRPNFGYEEFPF TRAV12-3*01 TRAJ48*01 37.0 1880.0 TGTGCCAGCAGCCAAGATTCGCGGGACACTAATGAAAAACTGTTTTTT CASSQDSRDTNEKLFF TRBV14*01 TRBJ1-4*01 11.0 294.0 CAMTRPNFGYEEFPF_CASSQDSRDTNEKLFF 1 6563 PGT-178 PGT 0.77 1480 PGT-178 119 6444 3 HomoSapiens PGT LLAGIGTVPI Naive T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*02:01 B2M MHCI -9918 chip0423_865245 -3.26 8.72 Chip2 T1D_6 T1D TGTGCAATGAGCGCATCTAACTTTGGAAATGAGAAATTAACCTTT CAMSASNFGNEKLTF TRAV12-3*01 TRAJ48*01 101.0 3399.0 TGTGCCAGCAGCCAAGATCTGGCGGGGGGAGAGACCCAGTACTTC CASSQDLAGGETQYF TRBV3-1*01 TRBJ2-5*01 50.0 2663.0 CAMSASNFGNEKLTF_CASSQDLAGGETQYF 1 6552 PGT-178 PGT 0.88 1480 PGT-178 114 6438 2 HomoSapiens PGT LLAGIGTVPI Naive T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*02:01 B2M MHCI -9919 chip0423_835847 11.69 11.49 Chip2 healthy_3 healthy _ 6746 2635 EBV-BRLF1 EBV 0.69 1264 NEG 104 2531 9 EBV BRLF1 YVLDHLIVV effector memory T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*02:01 B2M MHCI -9920 chip0423_234093 9.91 9.98 Chip2 healthy_3 healthy TGTGCCGTGAAGGAGGGAGGAAAGCTTATCTTC CAVKEGGKLIF TRAV8-1*01 TRAJ23*01 12.0 1104.0 TGTGCCAGCAGCCAGATGTCCGACTCGCAGCATTTT CASSQMSDSQHF TRBV6-2*01,TRBV6-3*01 TRBJ2-3*01 3.0 206.0 CAVKEGGKLIF_CASSQMSDSQHF 1 4662 EBV-BRLF1 EBV 0.67 1264 NEG 115 4547 9 EBV BRLF1 YVLDHLIVV effector memory T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*02:01 B2M MHCI -9921 chip0423_191678 4.9 11.65 Chip2 healthy_4 healthy TGTGCCAGCAGCGAGACAGGGGGCACACTTTCACCCCTCCACTTT CASSETGGTLSPLHF TRBV7-8*01 TRBJ1-6*01 24.0 1087.0 _CASSETGGTLSPLHF 1 3965 M1 FLU 1.0 1250 NEG 113 3852 6 InfluenzaA M1 GILGFVFTL central memory T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*02:01 B2M MHCI -9922 chip0423_29742 6.43 13.09 Chip2 healthy_3 healthy TGCATCCTGTCTGGTTCTGCAAGGCCACTGACCTTT CILSGSARPLTF TRAV26-2*01 TRAJ22*01 12.0 1082.0 TGTGCCAGCAGCGAGGAGGACGGGCCCCAGCATTTT CASSEEDGPQHF TRBV9*01 TRBJ1-5*01 35.0 2079.0 CILSGSARPLTF_CASSEEDGPQHF 1 4827 NP44-52 FLU 0.66 474 NP44-52 121 4706 7 InfluenzaA NP CTELKLSDY transitional T cells between effector and memory populations PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*01:01 B2M MHCI -9923 chip0423_779185 7.79 13.58 Chip2 T1D_6 T1D _ 6746 3784 NP380-388 FLU 0.47 60 NEG 124 3660 7 InfluenzaA NP ELRSRYWAI transitional T cells between effector and memory populations PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-B*08:01 B2M MHCI -9924 chip0423_377096 6.03 10.01 Chip2 T1D_5 T1D TGTGCCAGCAGGGGAGCGGGGGGCCGAACGACCGGGGAGCTGTTTTT CASRGAGgg?PNDRGAVF TRBV27*01 TRBJ2-2*01 23.0 2358.0 _CASRGAGgg?PNDRGAVF 1 5832 G6PC2-YLK-8 IGRP 0.57 27 NEG 116 5716 6 HomoSapiens G6PC2 YLKTNLFL central memory T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-B*08:01 B2M MHCI -9925 chip0423_258518 7.21 12.7 Chip2 T1D_6 T1D TGTGCAGAGACCCTCGGCAACCAGTTCTATTTT CAETLGNQFYF TRAV13-2*01 TRAJ49*01 1.0 212.0 TGTGCCAGCAATCGGGGGTACACAGATACGCAGTATTTT CASNRGYTDTQYF TRBV12-3*01,TRBV12-4*01 TRBJ2-3*01 11.0 660.0 CAETLGNQFYF_CASNRGYTDTQYF 1 4514 ROTA-VP6 ROTA 0.44 47 NEG 143 4371 7 RotavirusA VP6 TLLANVTAV transitional T cells between effector and memory populations PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*02:01 B2M MHCI -9926 chip0423_877508 11.78 10.8 Chip2 T1D_4 T1D TGTGCTGTGAGTGATGGAGAAGGAGCCCAGAAGCTGGTATTT CAVSDGEGAQKLVF TRAV8-6*01 TRAJ54*01 48.0 2008.0 TGTGCCAGCAGCTTAACGGTTCTGGCAGGTCCAAACACTGAAGCTTTCTTT CASSLTVLAGPNTEAFF TRBV7-3*01 TRBJ1-1*01 56.0 2075.0 CAVSDGEGAQKLVF_CASSLTVLAGPNTEAFF 44 4622 BZLF1-190-197 EBV 0.76 2156 BZLF1-190-197 130 4492 9 EBV BZLF1 RAKFKQLL effector memory T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-B*08:01 B2M MHCI -9927 chip0423_625533 -1.33 9.17 Chip2 healthy_3 healthy TGTGCCGTGCGGGCAGGAACTGCTCTGATCTTT CAVRAGTALIF TRAV12-2*01 TRAJ15*01 12.0 1405.0 TGTGCCAGGTGGAATCGGACAGGGGACTTC CARWNRTGDF TRBV2*01 TRBJ2-7*01 31.0 2707.0 CAVRAGTALIF_CARWNRTGDF 1 6292 PTPRN-180-188 PTPRN 0.75 18 NEG 110 6182 4 HomoSapiens PTPRN LLPPLLEHL Naive T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*02:01 B2M MHCI -9928 chip0423_494981 -3.08 9.77 Chip2 T1D_4 T1D TGTGCCGCGTCGATAGGCTTT CAASIGF TRAV12-2*01 TRAJ11*01 7.0 1189.0 TGTGCCAGCATCACGGGGTCCACTGAAGCTTTCTTT CASITGSTEAFF TRBV28*01 TRBJ1-1*01 19.0 1222.0 CAASIGF_CASITGSTEAFF 1 5587 MART1-ALA MART1 0.58 269 NEG 104 5483 2 HomoSapiens MART1 ALAGIGILTV Naive T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*02:01 B2M MHCI -9929 chip0423_421973 11.64 10.94 Chip2 T1D_4 T1D TGTGCCAGCAGCTTAACGGTTCTGGCAGGTCCAAACACTGAAGCTTTCTTT CASSLTVLAGPNTEAFF TRBV7-3*01 TRBJ1-1*01 8.0 231.0 _CASSLTVLAGPNTEAFF 32 3501 BZLF1-190-197 EBV 0.86 2156 BZLF1-190-197 143 3358 9 EBV BZLF1 RAKFKQLL effector memory T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-B*08:01 B2M MHCI -9930 chip0423_318850 6.16 11.94 Chip2 healthy_3 healthy TGTGCCGTGAACCCGGGCAATGACATGCGCTTT CAVNPGNDMRF TRAV12-2*01 TRAJ43*01 2.0 287.0 TGCAGCGTTTCTCCCGGGATCTCTGGAAACACCATATATTTT CSVSPGISGNTIYF TRBV29-1*01 TRBJ1-3*01 55.0 3066.0 CAVNPGNDMRF_CSVSPGISGNTIYF 1 6563 PGT-178 PGT 0.75 1480 NEG 105 6458 7 HomoSapiens PGT LLAGIGTVPI transitional T cells between effector and memory populations PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*02:01 B2M MHCI -9931 chip0423_288473 -3.6 10.4 Chip2 T1D_6 T1D TGTGCCAGCAGTTACGGCACCGGGGAGCTGTTTTTT CASSYGTGELFF TRBV27*01 TRBJ2-2*01 9.0 835.0 _CASSYGTGELFF 1 5296 EBV-BRLF1 EBV 0.86 1264 NEG 109 5187 2 EBV BRLF1 YVLDHLIVV Naive T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*02:01 B2M MHCI -9932 chip0423_588734 15.24 12.86 Chip2 healthy_3 healthy _ 6746 1959 M1 FLU 0.41 1250 NEG 126 1833 12 InfluenzaA M1 GILGFVFTL effector T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*02:01 B2M MHCI -9933 chip0423_408004 14.44 8.75 Chip2 T1D_4 T1D TGTGCAGCTCTCGAAACCTCCTACGACAAGGTGATATTT CAALETSYDKVIF TRAV13-1*01 TRAJ50*01 1.0 71.0 TGTGCCAGCAGTCCCGACGGATCCACCGGGGAGCTGTTTTTT CASSPDGSTGELFF TRBV12-3*01,TRBV12-4*01 TRBJ2-2*01 1.0 40.0 CAALETSYDKVIF_CASSPDGSTGELFF 14 3478 BZLF1-190-197 EBV 0.8 2156 BZLF1-190-197 111 3367 12 EBV BZLF1 RAKFKQLL effector T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-B*08:01 B2M MHCI -9934 chip0423_170282 8.56 11.97 Chip2 T1D_6 T1D TGTGCAGAGAATACCCGATACTTTGGACGTGTGTCCTTATCCTTT CAENTRYFGRVSLSF TRAV13-2*01 TRAJ48*01 32.0 1539.0 TGTGCCAGCAGCCAAGTTCGCGGCGGGTACGAGCAGTACTTC CASSQVRGGYEQYF TRBV3-1*01 TRBJ2-7*01 26.0 2201.0 CAENTRYFGRVSLSF_CASSQVRGGYEQYF 1 4773 BZLF1-190-197 EBV 0.45 2156 NEG 110 4663 7 EBV BZLF1 RAKFKQLL transitional T cells between effector and memory populations PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-B*08:01 B2M MHCI -9935 chip0423_1929 -1.12 6.71 Chip2 healthy_3 healthy TGTGCCGTGGGGGGAGGAGGAAACAAACTCACCTTT CAVGGGGNKLTF TRAV12-2*01 TRAJ10*01 33.0 2813.0 CAVGGGGNKLTF_ 1 7283 PGT-178 PGT 0.76 1480 NEG 97 7186 3 HomoSapiens PGT LLAGIGTVPI Naive T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*02:01 B2M MHCI -9936 chip0423_691041 -2.72 10.13 Chip2 T1D_6 T1D TGCGCCAGCAGCGAAACAACACAGGGCCAATACACAGATACGCAGTATTTT CASSETTQGQYTDTQYF TRBV5-1*01 TRBJ2-3*01 200.0 6674.0 _CASSETTQGQYTDTQYF 1 5219 PGT-178 PGT 0.79 1480 PGT-178 112 5107 2 HomoSapiens PGT LLAGIGTVPI Naive T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*02:01 B2M MHCI -9937 chip0423_726096 9.3 12.23 Chip2 healthy_4 healthy _ 6746 2486 BZLF1-190-197 EBV 0.8 2156 NEG 119 2367 7 EBV BZLF1 RAKFKQLL transitional T cells between effector and memory populations PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-B*08:01 B2M MHCI -9938 chip0423_221808 10.26 11.26 Chip2 T1D_6 T1D CGCAGCGCCGGCAGGGACGGGACTAATGAAAAACTGTTTTTT RSAGRDGTNEKLFF TRBV29-1*01 TRBJ1-4*01 59.0 3580.0 _RSAGRDGTNEKLFF 2 4441 EBV-BLMF1 EBV 0.48 2531 NEG 138 4303 9 EBV BLMF1 GLCTLVAML effector memory T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*02:01 B2M MHCI -9939 chip0423_837548 -2.32 10.55 Chip2 T1D_4 T1D _ 6746 5052 PGT-178 PGT 0.71 1480 NEG 107 4945 3 HomoSapiens PGT LLAGIGTVPI Naive T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*02:01 B2M MHCI -9940 chip0423_509332 7.22 11.71 Chip2 healthy_3 healthy TGTGCCAGCACGGGGACTAGCGATAGCACAGATACGCAGTATTTT CASTGTSDSTDTQYF TRBV2*01 TRBJ2-3*01 8.0 605.0 _CASTGTSDSTDTQYF 9 7536 NP44-52 FLU 0.86 474 NP44-52 122 7414 7 InfluenzaA NP CTELKLSDY transitional T cells between effector and memory populations PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*01:01 B2M MHCI -9941 chip0423_326300 8.76 8.33 Chip2 T1D_6 T1D TGTGCAGCAAGCAAGATAGAGGAGGAGGGGCTGGCGGCCTCACCTTT CAASKIEga?GGAGGLTF TRAV23/DV6*01 TRAJ45*01 20.0 595.0 TGTGCCAGCAGCTTGGGACAGGCCTACGAGCAGTACTTC CASSLGQAYEQYF TRBV7-8*01 TRBJ2-7*01 29.0 1243.0 CAASKIEga?GGAGGLTF_CASSLGQAYEQYF 1 9814 EBNA3A-193-201 EBV 0.86 1022 EBNA3A-193-201 141 9673 8 EBV EBNA3A FLRGRAYGL effector memory T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-B*08:01 B2M MHCI -9942 chip0423_174351 -3.48 11.91 Chip2 T1D_5 T1D TGTGCCAGCAGCTTAGATTCAGGGATGGGCTACGAGCAGTACTTC CASSLDSGMGYEQYF TRBV11-3*01 TRBJ2-7*01 15.0 790.0 _CASSLDSGMGYEQYF 1 5474 GAD2-SRK-8 GAD65 0.88 10 GAD2-SRK-8 102 5372 1 HomoSapiens GAD2 SRKHKWKL Naive T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-B*08:01 B2M MHCI -9943 chip0423_100771 6.4 10.32 Chip2 T1D_4 T1D TGTGCAGGCTCTGGGGCTGGGAGTTACCAACTCACTTTC CAGSGAGSYQLTF TRAV25*01 TRAJ28*01 2.0 35.0 TGCGCCAGCAGCTTGGAGGGACAGGCCAGCTCCTACGAGCAGTACTTC CASSLEGQASSYEQYF TRBV5-1*01 TRBJ2-7*01 4.0 199.0 CAGSGAGSYQLTF_CASSLEGQASSYEQYF 2 4367 EBV-LMP2A EBV 0.94 700 EBV-LMP2A 104 4263 6 EBV LMP2A CLGGLLTMV central memory T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*02:01 B2M MHCI -9944 chip0423_263126 -4.19 7.68 Chip2 T1D_6 T1D TGCGCCAGCAGCCAAGGACAGGGTTCAAGGAATGAGCAGTTCTTC CASSQGQGSRNEQFF TRBV4-1*01 TRBJ2-1*01 1.0 38.0 _CASSQGQGSRNEQFF 1 6923 IAPP-LNH-9 IAPP 0.67 15 NEG 109 6814 2 HomoSapiens IAPP LNHLKATPI Naive T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-B*08:01 B2M MHCI -9945 chip0423_312216 4.94 9.88 Chip2 T1D_4 T1D _ 6746 3973 EBV-LMP2-FLY EBV 0.56 355 NEG 103 3870 6 EBV LMP2 FLYALALLL central memory T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*02:01 B2M MHCI -9946 chip0423_250902 -4.17 10.74 Chip2 healthy_3 healthy TGTGCCAGCACGGATAGGGCCTATGGCTACACCTTC CASTDRAYGYTF TRBV6-1*01 TRBJ1-2*01 8.0 220.0 _CASTDRAYGYTF 1 4477 PGT-178 PGT 0.51 1480 PGT-178 111 4366 2 HomoSapiens PGT LLAGIGTVPI Naive T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*02:01 B2M MHCI -9947 chip0423_34843 -3.93 12.08 Chip2 T1D_4 T1D _ 6746 4193 PGT-178 PGT 0.71 1480 NEG 109 4084 1 HomoSapiens PGT LLAGIGTVPI Naive T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*02:01 B2M MHCI -9948 chip0423_405077 -3.56 9.5 Chip2 healthy_3 healthy TGTGCAATGGGAGGAGGAAACAAACTCACCTTT CAMGGGNKLTF TRAV12-3*01 TRAJ10*01 8.0 565.0 TGTGCCAGCAACTTCGGGTTTAGTGACTACGAGCAGTACTTC CASNFGFSDYEQYF TRBV6-2*01,TRBV6-3*01 TRBJ2-7*01 4.0 101.0 CAMGGGNKLTF_CASNFGFSDYEQYF 1 5991 PGT-178 PGT 0.8 1480 PGT-178 109 5882 2 HomoSapiens PGT LLAGIGTVPI Naive T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*02:01 B2M MHCI -9949 chip0423_403284 9.46 13.92 Chip2 T1D_4 T1D TGTGCCAGTAGTATATTTAGCAATCAGCCCCAGCATTTT CASSIFSNQPQHF TRBV19*01 TRBJ1-5*01 30.0 1706.0 _CASSIFSNQPQHF 1 1874 M1 FLU 0.8 1250 NEG 134 1740 11 InfluenzaA M1 GILGFVFTL effector T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*02:01 B2M MHCI -9950 chip0423_552755 5.53 11.99 Chip2 healthy_3 healthy TGTGCTCTGAGTGAGGCGGGGTTTTATAACCAGGGAGGAAAGCTTATCTTC CALSEAGFYNQGGKLIF TRAV19*01 TRAJ23*01 104.0 2508.0 CALSEAGFYNQGGKLIF_ 1 6864 NP44-52 FLU 0.79 474 NP44-52 98 6766 7 InfluenzaA NP CTELKLSDY transitional T cells between effector and memory populations PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*01:01 B2M MHCI -9951 chip0423_881058 11.85 10.09 Chip2 T1D_4 T1D TGCCTCCTCCCCCTTGCTGGTGGTACTAGCTATGGAAAGCTGCCATTT CLLPLAGGTSYGKLPF TRAV26-2*01 TRAJ52*01 9.0 175.0 CLLPLAGGTSYGKLPF_ 1 4853 EBNA3A-193-201 EBV 0.73 1022 EBNA3A-193-201 161 4692 9 EBV EBNA3A FLRGRAYGL effector memory T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-B*08:01 B2M MHCI -9952 chip0423_738137 7.37 9.98 Chip2 healthy_4 healthy TGTGCCGTGGGGAAAACTGACGGACTCACCTTT CAVGKTDGLTF TRAV8-1*01 TRAJ45*01 9.0 1136.0 CAVGKTDGLTF_ 1 5566 EBV-BRLF1 EBV 0.97 1264 EBV-BRLF1 115 5451 8 EBV BRLF1 YVLDHLIVV effector memory T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*02:01 B2M MHCI -9953 chip0423_406073 4.94 11.1 Chip2 healthy_4 healthy TGCAGCGACATAACGTGGAAAATGGCCACAAGCTGGTCTTT CSDITWaa?NGHKLVF TRAV26-1*01 TRAJ47*01 18.0 655.0 TGTGCCCGTAGTATGCTGGGTTCGGGCTACAATGAGCAGTTCTTC CARSMLGSGYNEQFF TRBV19*01 TRBJ2-1*01 3.0 6.0 CSDITWaa?NGHKLVF_CARSMLGSGYNEQFF 1 3803 M1 FLU 0.88 1250 NEG 106 3697 6 InfluenzaA M1 GILGFVFTL central memory T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*02:01 B2M MHCI -9954 chip0423_388774 6.79 14.4 Chip2 T1D_6 T1D TGTGCCAGCAGCTTAGCGGGTCGTGAGGGTACGCAGTATTTT CASSLAGREGTQYF TRBV11-3*01 TRBJ2-3*01 9.0 544.0 _CASSLAGREGTQYF 13 3604 NP380-388 FLU 0.5 60 NEG 117 3487 7 InfluenzaA NP ELRSRYWAI transitional T cells between effector and memory populations PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-B*08:01 B2M MHCI -9955 chip0423_258768 5.99 13.67 Chip2 healthy_3 healthy _ 6746 5869 NP44-52 FLU 0.7 474 NP44-52 107 5762 7 InfluenzaA NP CTELKLSDY transitional T cells between effector and memory populations PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*01:01 B2M MHCI -9956 chip0423_374042 5.35 9.23 Chip2 T1D_4 T1D TGTGCTGTCCCAGGAGGAAGCCAAGGAAATCTCATCTTT CAVPGGSQGNLIF TRAV8-3*01 TRAJ42*01 7.0 313.0 TGTGCCAGCAGTTACTCAAGTACAGGGGAGTACTTC CASSYSSTGEYF TRBV6-2*01,TRBV6-3*01 TRBJ2-7*01 20.0 1170.0 CAVPGGSQGNLIF_CASSYSSTGEYF 20 5671 EBV-LMP1-1 EBV 1.0 237 NEG 120 5551 6 EBV LMP1 YLLEMLWRL central memory T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*02:01 B2M MHCI -9957 chip0423_317901 10.54 10.98 Chip2 healthy_4 healthy TGTGCTGTCCCCATTAATGCTGGCACCCACCGTAAGCTGATTTGG CAVPINAGTHRKLIW TRAV1-2*01 TRAJ38*01 44.0 1994.0 TGCAGTGCCCGGGACAGGGGGTCGGAGAACACCGGGGAGCTGTTTTTT CSARDRGSENTGELFF TRBV20-1*01 TRBJ2-2*01 58.0 3025.0 CAVPINAGTHRKLIW_CSARDRGSENTGELFF 1 4408 BZLF1-190-197 EBV 0.91 2156 BZLF1-190-197 122 4286 9 EBV BZLF1 RAKFKQLL effector memory T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-B*08:01 B2M MHCI -9958 chip0423_167333 -3.9 8.7 Chip2 T1D_4 T1D TGTGCAATGCTTTTATCTAACTTTGGCGATGAGAAATTACCCTTT CAMLLSNFGDEKLPF TRAV12-3*01 TRAJ48*01 14.0 393.0 TGTGCCAGCAGCTTTAGCGGTCGGAGAAGGGCCCCAGCATTTT CASSFSG??cGEGPQHF TRBV7-9*01 TRBJ1-5*01 1.0 68.0 CAMLLSNFGDEKLPF_CASSFSG??cGEGPQHF 1 5376 PGT-178 PGT 0.48 1480 PGT-178 115 5261 2 HomoSapiens PGT LLAGIGTVPI Naive T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*02:01 B2M MHCI -9959 chip0423_632870 -2.14 9.19 Chip2 T1D_6 T1D TGCGCCAGCAGCCACCGGACAGGGTCTGGAAACACCATATATTTT CASSHRTGSGNTIYF TRBV14*01 TRBJ1-3*01 2.0 21.0 _CASSHRTGSGNTIYF 1 7204 PGT-178 PGT 0.95 1480 PGT-178 114 7090 3 HomoSapiens PGT LLAGIGTVPI Naive T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*02:01 B2M MHCI -9960 chip0423_369680 -2.76 10.41 Chip2 healthy_4 healthy TGTGCTGTGATTTTCCCGGGAGGAGGAAACAAACTCACCTTT CAVIFPGGGNKLTF TRAV8-6*01 TRAJ10*01 30.0 1997.0 TGCAGCGTTGAAGAGGGTCGGGGGGCCGGGGAGCTGTTTTTT CSVEEGRGAGELFF TRBV29-1*01 TRBJ2-2*01 60.0 4451.0 CAVIFPGGGNKLTF_CSVEEGRGAGELFF 1 3976 PGT-178 PGT 0.5 1480 PGT-178 98 3878 3 HomoSapiens PGT LLAGIGTVPI Naive T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*02:01 B2M MHCI -9961 chip0423_33981 -3.17 12.09 Chip2 T1D_6 T1D _ 6746 4738 GAD2-RMM-9 GAD65 0.7 9 NEG 105 4633 1 HomoSapiens GAD2 RMMEYGTTM Naive T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-B*08:01 B2M MHCI -9962 chip0423_250543 11.43 11.21 Chip2 healthy_4 healthy TGCGCCAGCAGCTGGGGACAGGGACCTACCTACGAGCAGTACTTC CASSWGQGPTYEQYF TRBV4-1*01 TRBJ2-7*01 2.0 37.0 _CASSWGQGPTYEQYF 5 2953 BZLF1-190-197 EBV 1.0 2156 NEG 122 2831 9 EBV BZLF1 RAKFKQLL effector memory T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-B*08:01 B2M MHCI -9963 chip0423_850915 4.87 11.64 Chip2 healthy_4 healthy TGTGCCAGCAACACCGGGACAGGCTTGGGGGAGCAGTTCTTC CASNTGTGLGEQFF TRBV25-1*01 TRBJ2-1*01 13.0 552.0 _CASNTGTGLGEQFF 4 3644 M1 FLU 1.0 1250 NEG 100 3544 6 InfluenzaA M1 GILGFVFTL central memory T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*02:01 B2M MHCI -9964 chip0423_437931 -0.52 4.58 Chip2 T1D_4 T1D _ 6746 3807 GP160-311-320 HIV 0.5 109 NEG 119 3688 5 HIV-1 GP160 RGPGRAFVTI natural killer-like T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*02:01 B2M MHCI -9965 chip0423_506065 14.65 11.02 Chip2 T1D_5 T1D _ 6746 3009 BZLF1-190-197 EBV 0.78 2156 NEG 123 2886 12 EBV BZLF1 RAKFKQLL effector T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-B*08:01 B2M MHCI -9966 chip0423_364127 5.49 12.44 Chip2 healthy_3 healthy TGTGCTGTGGGGGGTTATGGAGGAAGCCAAGGAAATCTCATCTTT CAVGGYGGSQGNLIF TRAV3*01 TRAJ42*01 17.0 793.0 CAVGGYGGSQGNLIF_ 2 4743 M1 FLU 1.0 1250 NEG 109 4634 6 InfluenzaA M1 GILGFVFTL central memory T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*02:01 B2M MHCI -9967 chip0423_356220 13.31 9.6 Chip2 healthy_4 healthy TGTGCTGTGGAGAAGAAGAACACCGACACGCTCATCTTT CAVEKKNTDTLIF TRAV21*01 TRAJ34*01 31.0 1102.0 CAVEKKNTDTLIF_ 1 3889 BZLF1-190-197 EBV 0.8 2156 NEG 128 3761 10 EBV BZLF1 RAKFKQLL effector memory T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-B*08:01 B2M MHCI -9968 chip0423_97114 10.65 7.1 Chip2 T1D_5 T1D TGTGCCAGCAGCTCGACCCAGTCCGGCGATCAGCCCCAGCATTTT CASSSTQSGDQPQHF TRBV7-9*01 TRBJ1-5*01 1.0 25.0 _CASSSTQSGDQPQHF 1 4439 BZLF1-190-197 EBV 0.62 2156 BZLF1-190-197 124 4315 10 EBV BZLF1 RAKFKQLL effector memory T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-B*08:01 B2M MHCI -9969 chip0423_45879 11.43 11.02 Chip2 T1D_4 T1D TGCATCCTGCCTCTTGCTGGTGGTACTAGCTATGGAAAGCTGACATTT CILPLAGGTSYGKLTF TRAV26-2*01 TRAJ52*01 2.0 28.0 TGTGCCAGCAGCTTAGGGCAAGCCTACGAGCAGTACTTC CASSLGQAYEQYF TRBV7-8*01 TRBJ2-7*01 35.0 1872.0 CILPLAGGTSYGKLTF_CASSLGQAYEQYF 308 4313 EBNA3A-193-201 EBV 0.78 1022 EBNA3A-193-201 128 4185 9 EBV EBNA3A FLRGRAYGL effector memory T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-B*08:01 B2M MHCI -9970 chip0423_653914 -1.92 7.09 Chip2 healthy_4 healthy TGTGCTTCCGATAACGACTACAAGCTCAGCTTT CASDNDYKLSF TRAV1-2*01 TRAJ20*01 13.0 1946.0 TGCCGTGCTACTTCCGGGGCGGGAGTCGAGCATGGCTACACCTTC CRATSGAGVEHGYTF TRBV20-1*01 TRBJ1-2*01 14.0 488.0 CASDNDYKLSF_CRATSGAGVEHGYTF 1 7216 Gag260-267 HIV 1.0 10 NEG 108 7108 3 HIV-1 Gag EIYKRWII Naive T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-B*08:01 B2M MHCI -9971 chip0423_564811 8.75 13.81 Chip2 T1D_6 T1D TGTGCCAGCAGCTTAGCGGGTCGTGAGGGTACGCAGTATTTT CASSLAGREGTQYF TRBV11-3*01 TRBJ2-3*01 27.0 1708.0 _CASSLAGREGTQYF 13 2276 NP380-388 FLU 0.57 60 NEG 115 2161 11 InfluenzaA NP ELRSRYWAI effector T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-B*08:01 B2M MHCI -9972 chip0423_718252 13.15 9.41 Chip2 healthy_4 healthy TGTGCCGTGGAGGATCAAGGGAGATCTTATAACACCGACAAGCTCATCTTT CAVEDQGRSYNTDKLIF TRAV2*01 TRAJ34*01 67.0 1526.0 CAVEDQGRSYNTDKLIF_ 15 4550 BZLF1-190-197 EBV 0.83 2156 NEG 124 4426 10 EBV BZLF1 RAKFKQLL effector memory T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-B*08:01 B2M MHCI -9973 chip0423_211586 -3.04 8.15 Chip2 healthy_3 healthy TGTGCCGGGGCTCAGGGCGGATCTGAAAAGCTGGTCTTT CAGAQGGSEKLVF TRAV12-2*01 TRAJ57*01 22.0 1971.0 TGTGCCAGCAGCCAATCCGGGAGCGAGCAGTACTTC CASSQSGSEQYF TRBV16*01 TRBJ2-7*01 3.0 127.0 CAGAQGGSEKLVF_CASSQSGSEQYF 1 5416 PGT-178 PGT 0.57 1480 PGT-178 108 5308 2 HomoSapiens PGT LLAGIGTVPI Naive T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*02:01 B2M MHCI -9974 chip0423_774132 -1.66 9.62 Chip2 healthy_3 healthy TGTGCCGTGAACCCCAGCCAGAATTTTGTCTTT CAVNPSQNFVF TRAV12-2*01 TRAJ26*01 7.0 515.0 TGTGCCAGCAGCGACCGGGACAGGGGGCTGGATGAGCAGTTCTTC CASSDRDRGLDEQFF TRBV3-1*01 TRBJ2-1*01 16.0 863.0 CAVNPSQNFVF_CASSDRDRGLDEQFF 1 5556 PGT-178 PGT 0.61 1480 PGT-178 93 5463 3 HomoSapiens PGT LLAGIGTVPI Naive T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*02:01 B2M MHCI -9975 chip0423_479228 5.01 10.94 Chip2 T1D_6 T1D TGTGCTCCGATACAACCGCCATACAACTTCAACAAATTTTACTTT CAPIQPPYNFNKFYF TRAV35*01 TRAJ21*01 1.0 31.0 TGTGTGGTGAGGACCCCATAGGATAATGCAGGCAACATGCTCACCTTT CVVRTP*DNAGNMLTF TRAV12-1*01 TRAJ39*01 1.0 20.0 0.5 CAPIQPPYNFNKFYF_ 1 6886 IAPP-STN-9 IAPP 0.78 48 NEG 126 6760 6 HomoSapiens IAPP STNVGSNTY central memory T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*01:01 B2M MHCI -9976 chip0423_409454 5.96 10.41 Chip2 healthy_3 healthy TGTGCTCTGAGTTCTTATTCTGGGGGTTCCCAGCAAGTTCCCTTT CALSSYSGGSQQVPF TRAV19*01 TRAJ13*01 12.0 505.0 CALSSYSGGSQQVPF_ 1 6740 NP44-52 FLU 0.65 474 NP44-52 112 6628 6 InfluenzaA NP CTELKLSDY central memory T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*01:01 B2M MHCI -9977 chip0423_302895 13.04 13.32 Chip2 T1D_4 T1D TGTGCCAGCAGCCAAGTCAACAACCCGGGGGATGGCTACACCTTC CASSQVNNPGDGYTF TRBV14*01 TRBJ1-2*01 7.0 177.0 _CASSQVNNPGDGYTF 94 2671 EBNA3A-158-166 EBV 0.44 444 NEG 133 2538 11 EBV EBNA3A QAKWRLQTL effector T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-B*08:01 B2M MHCI -9978 chip0423_61958 -1.94 10.93 Chip2 T1D_5 T1D TGTGGCACAGAGAGGGCGTCTAGCAACACAGGCAAACTAATCTTT CGTERASSNTGKLIF TRAV30*01 TRAJ37*01 25.0 2016.0 CGTERASSNTGKLIF_ 1 5101 ZNT8-VTD-9 ZNT8 1.0 65 ZNT8-VTD-9 100 5001 3 HomoSapiens ZNT8 VTDAAHLLI Naive T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*01:01 B2M MHCI -9979 chip0423_664270 6.54 11.93 Chip2 healthy_3 healthy TGTGCAGCAAGCGGAGACTACAAGCTCAGCTTT CAASGDYKLSF TRAV13-1*01 TRAJ20*01 21.0 2055.0 TGTGCCAGCAGCCCAAAGACAGGAGCAGGACTAGCGGGTGATGAGCAGTTCTTC CASSPKTGAGLAGDEQFF TRBV11-1*01 TRBJ2-1*01 50.0 2182.0 CAASGDYKLSF_CASSPKTGAGLAGDEQFF 2 7192 NP44-52 FLU 0.78 474 NP44-52 121 7071 7 InfluenzaA NP CTELKLSDY transitional T cells between effector and memory populations PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*01:01 B2M MHCI -9980 chip0423_650494 -2.59 7.72 Chip2 T1D_6 T1D TGTGCAATGAGCGACACCAATGCAGGCAAATCAACCTTT CAMSDTNAGKSTF TRAV12-3*01 TRAJ27*01 14.0 1205.0 TGTGCCAGCAGAGGACAGAGATACACTGAAGCTTTCTTT CASRGQRYTEAFF TRBV27*01 TRBJ1-1*01 14.0 394.0 CAMSDTNAGKSTF_CASRGQRYTEAFF 1 7269 ZNT8-153-161 ZNT8 0.5 41 NEG 127 7142 3 HomoSapiens ZNT8 VVTGVLVYL Naive T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*02:01 B2M MHCI -9981 chip0423_546945 15.39 12.75 Chip2 T1D_5 T1D TGTGCAGAGATGGAAACCTCCTACGACAAGGCGATATTT CAEMETSYDKAIF TRAV13-2*01 TRAJ50*01 21.0 2021.0 TGTGCCAGCAGCTCCTTAAGCGGGGGGGCAGGAAATGAGCAGTTCTTC CASSSLSGGAGNEQFF TRBV7-9*01 TRBJ2-1*01 8.0 403.0 CAEMETSYDKAIF_CASSSLSGGAGNEQFF 1 1879 BZLF1-190-197 EBV 0.59 2156 NEG 106 1773 12 EBV BZLF1 RAKFKQLL effector T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-B*08:01 B2M MHCI -9982 chip0423_481797 13.82 10.64 Chip2 T1D_5 T1D TGCCTCCTGACCCCCTTCCGCGTCTGCCCTCAACTTC CLLTPF??cASALNF TRAV26-2*01 TRAJ41*01 15.0 1971.0 TGTGCCAGCAGCCAATTGGGGGAGGCGAAGGAAGGCACTGAAGCTTCCTTT CASSQLGEAKEGTEASF TRBV11-1*01 TRBJ1-1*01 48.0 1276.0 CLLTPF??cASALNF_CASSQLGEAKEGTEASF 1 3631 NP140-148 FLU 0.5 102 NEG 105 3526 12 InfluenzaA NP HSNLNDATY effector T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*01:01 B2M MHCI -9983 chip0423_20130 -1.2 11.13 Chip2 T1D_5 T1D TGTGACTACGGCCAGGGGGCTTCTGGAAACACCATATATTTT CDYGQGASGNTIYF TRBV10-3*01 TRBJ1-3*01 13.0 313.0 _CDYGQGASGNTIYF 1 5670 GAD2-FSL-9 GAD65 0.68 3 GAD2-FSL-9 133 5537 3 HomoSapiens GAD2 FSLKKGAAA Naive T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-B*08:01 B2M MHCI -9984 chip0423_823513 11.49 10.84 Chip2 T1D_5 T1D TGTGCAGCAAGTGAAACCTCCTACGACAAGGTGATATTT CAASETSYDKVIF TRAV13-1*01 TRAJ50*01 23.0 2046.0 CAASETSYDKVIF_ 51 3743 BZLF1-190-197 EBV 0.75 2156 NEG 123 3620 9 EBV BZLF1 RAKFKQLL effector memory T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-B*08:01 B2M MHCI -9985 chip0423_683611 15.26 11.07 Chip2 T1D_5 T1D TGTGCAGCGGCGGAAACCTCCTACGACAAGGTGATATTT CAAAETSYDKVIF TRAV13-1*01 TRAJ50*01 7.0 381.0 TGCGCCAGCAGCTTGTACTGGGACAGCTCCTACGAGCAGTACTTC CASSLYWDSSYEQYF TRBV5-1*01 TRBJ2-7*01 26.0 1520.0 CAAAETSYDKVIF_CASSLYWDSSYEQYF 1 2313 BZLF1-190-197 EBV 0.4 2156 NEG 145 2168 12 EBV BZLF1 RAKFKQLL effector T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-B*08:01 B2M MHCI -9986 chip0423_466370 15.76 10.23 Chip2 healthy_3 healthy _ 6746 3547 GAD65-114-122 GAD65 0.42 63 NEG 112 3435 12 HomoSapiens GAD65 VMNILLQYV effector T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*02:01 B2M MHCI -9987 chip0423_450467 6.3 13.14 Chip2 T1D_4 T1D TGTGCCAGCAGTTACAATTCTCGGACACACTCAAGCAATCAGCCCCAGCATTTT CASSYNSRTHSSNQPQHF TRBV6-2*01,TRBV6-3*01 TRBJ1-5*01 60.0 1420.0 _CASSYNSRTHSSNQPQHF 1 4239 M1 FLU 0.77 1250 M1 113 4126 7 InfluenzaA M1 GILGFVFTL transitional T cells between effector and memory populations PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*02:01 B2M MHCI -9988 chip0423_835605 -3.35 10.27 Chip2 T1D_5 T1D TGTGCCGTGAATGACGAGGGTAGCAACTATCAGTTAATCTGG CAVNDEGSNYQLIW TRAV12-2*01 TRAJ33*01 27.0 918.0 TGTGCCAGCAGTATAGCGGGGGGGCTCGGCAATGAGCAGTTCTTC CASSIAGGLGNEQFF TRBV6-2*01,TRBV6-3*01 TRBJ2-1*01 41.0 1450.0 CAVNDEGSNYQLIW_CASSIAGGLGNEQFF 1 6079 ZNT8-YAY-8 ZNT8 0.57 54 NEG 108 5971 4 HomoSapiens ZNT8 YAYAKWKL Naive T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-B*08:01 B2M MHCI -9989 chip0423_681199 7.61 10.41 Chip2 healthy_5 healthy TGTGCCAGCAGCTTAGTAACTTCGAACACCGGGGAGCTGTTTTTT CASSLVTSNTGELFF TRBV7-9*01 TRBJ2-2*01 25.0 865.0 _CASSLVTSNTGELFF 1 5134 BZLF1-190-197 EBV 0.52 2156 NEG 101 5033 7 EBV BZLF1 RAKFKQLL transitional T cells between effector and memory populations PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-B*08:01 B2M MHCI -9990 chip0423_494282 6.79 12.41 Chip2 healthy_3 healthy TGTGCCGTGAACCCCAGCTTTCAGAAACTTGTATTT CAVNPSFQKLVF TRAV12-2*01 TRAJ8*01 31.0 3812.0 TGCGCCAGCAGCCAAGAGGGACAGGGTGCCGGGGAGCTGTTTTTT CASSQEGQGAGELFF TRBV4-1*01 TRBJ2-2*01 16.0 740.0 CAVNPSFQKLVF_CASSQEGQGAGELFF 3 5316 NP44-52 FLU 0.86 474 NP44-52 107 5209 7 InfluenzaA NP CTELKLSDY transitional T cells between effector and memory populations PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*01:01 B2M MHCI -9991 chip0423_460216 5.78 12.55 Chip2 healthy_3 healthy TGTGCCAGCAGCTTGTGGTACAGGGTGGAGACCCAGTACTTC CASSLWYRVETQYF TRBV5-6*01 TRBJ2-5*01 3.0 153.0 _CASSLWYRVETQYF 4 3887 NP44-52 FLU 0.98 474 NP44-52 90 3797 7 InfluenzaA NP CTELKLSDY transitional T cells between effector and memory populations PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*01:01 B2M MHCI -9992 chip0423_366453 10.48 8.86 Chip2 healthy_4 healthy TGCGCCAGCAGCCAAGCCCCGGGACAGCGCACCGGGGAGCTGTTTTTT CASSQAPGQRTGELFF TRBV4-1*01 TRBJ2-2*01 19.0 1174.0 _CASSQAPGQRTGELFF 9 4119 BZLF1-190-197 EBV 0.82 2156 NEG 123 3996 10 EBV BZLF1 RAKFKQLL effector memory T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-B*08:01 B2M MHCI -9993 chip0423_59689 13.73 11.1 Chip2 healthy_3 healthy TGTGCTGTTCTCCCCTCTAACGACTACAAGCTCAGCTTT CAVLPSNDYKLSF TRAV21*01 TRAJ20*01 24.0 2020.0 TGTGCCAGTATCGGAAAGACCACTAACACAGATACGCAGTATTTT CASIGKTTNTDTQYF TRBV19*01 TRBJ2-3*01 9.0 237.0 CAVLPSNDYKLSF_CASIGKTTNTDTQYF 1 3956 NP44-52 FLU 0.86 474 NP44-52 108 3848 7 InfluenzaA NP CTELKLSDY transitional T cells between effector and memory populations PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*01:01 B2M MHCI -9994 chip0423_501581 -2.86 14.41 Chip2 healthy_3 healthy TGTGCCGTTGCTTTATCTAACTTTGGAAATGAGAAATTAACCTTT CAVALSNFGNEKLTF TRAV12-2*01 TRAJ48*01 40.0 1137.0 TGTGCCAGCAGCCCGACTATCCCGGGACCCTCCACAATACTCGAAGAGACCCAGTACTTC CASSPTIPGPSTILEETQYF TRBV14*01 TRBJ2-5*01 4.0 93.0 CAVALSNFGNEKLTF_CASSPTIPGPSTILEETQYF 1 2689 PGT-178 PGT 0.64 1480 NEG 114 2575 1 HomoSapiens PGT LLAGIGTVPI Naive T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*02:01 B2M MHCI -9995 chip0423_720807 11.76 12.79 Chip2 T1D_6 T1D TGCAGCGCCGGCAGGGACGGGACTAATGAAAAACTGTTTTTT CSAGRDGTNEKLFF TRBV29-1*01 TRBJ1-4*01 36.0 1791.0 _CSAGRDGTNEKLFF 159 2958 EBV-BLMF1 EBV 0.56 2531 NEG 139 2819 11 EBV BLMF1 GLCTLVAML effector T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*02:01 B2M MHCI -9996 chip0423_397048 0.17 6.11 Chip2 T1D_6 T1D TGTGCAGCGAGTACCTCAGGAACCTACACATACATCTTT CAASTSGTYTYIF TRAV13-1*01 TRAJ40*01 5.0 566.0 TGTGCCAGCAGTTCCCCCGGGCTGGGGTCAATGGGGGGCTACACCTTC CASSSPGLGSMGGYTF TRBV28*01 TRBJ1-2*01 12.0 641.0 CAASTSGTYTYIF_CASSSPGLGSMGGYTF 1 7485 ZNT8-293-300 ZNT8 0.48 17 ZNT8-293-300 128 7357 3 HomoSapiens ZNT8 LAVDGVLSV Naive T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*02:01 B2M MHCI -9997 chip0423_200319 11.23 7.52 Chip2 T1D_5 T1D TGTGCCAGCAGTTCCGGTTCTAGCGGGGGGGCCGGGGAGACCCAGTACTTC CASSSGSSGGAGETQYF TRBV12-3*01,TRBV12-4*01 TRBJ2-5*01 36.0 1867.0 _CASSSGSSGGAGETQYF 1 5110 BZLF1-190-197 EBV 0.86 2156 NEG 128 4982 10 EBV BZLF1 RAKFKQLL effector memory T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-B*08:01 B2M MHCI -9998 chip0423_504383 -3.95 8.37 Chip2 T1D_6 T1D TGTGCCAGCAGCTCCCCCCAAAAATACGAGCAGTACTTC CASSSPQKYEQYF TRBV13*01 TRBJ2-7*01 24.0 1431.0 _CASSSPQKYEQYF 1 8071 IGRP-265-273 IGRP 0.56 34 NEG 92 7979 2 HomoSapiens IGRP VLFGLGFAI Naive T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*02:01 B2M MHCI -9999 chip0423_502488 11.14 8.15 Chip2 healthy_4 healthy TGTGCTGTGGAGGATCAAGGGAGATCTTATAACACCGACAAGCTCCTCTTT CAVEDQGRSYNTDKLLF TRAV2*01 TRAJ34*01 8.0 103.0 CAVEDQGRSYNTDKLLF_ 2 4822 BZLF1-190-197 EBV 1.0 2156 NEG 118 4704 10 EBV BZLF1 RAKFKQLL effector memory T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-B*08:01 B2M MHCI -10000 chip0423_775629 -3.51 11.62 Chip2 T1D_4 T1D TGCATCCTCCCCTACTCTTCTGGTTCTGCAAGGCAACTGACCTTT CILPYSSGSARQLTF TRAV26-2*01 TRAJ22*01 10.0 912.0 TGTGCCAGCCAACTAGCGGGAGGCACCGGGGAGCTGTTTTTT CASQLAGGTGELFF TRBV24-1*01 TRBJ2-2*01 1.0 35.0 CILPYSSGSARQLTF_CASQLAGGTGELFF 1 4229 PGT-178 PGT 0.64 1480 NEG 129 4100 1 HomoSapiens PGT LLAGIGTVPI Naive T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*02:01 B2M MHCI -10001 chip0423_186478 10.69 8.93 Chip2 T1D_4 T1D TGCATCGTCAGAGAGGGAGGAGGTGCTGACGGACTCACCTTT CIVREGGGADGLTF TRAV26-1*01 TRAJ45*01 31.0 2033.0 TGTGCCAGCAGCTTAGCGGTCGGAGAAGGGCCCCAGCATTTT CASSLAVGEGPQHF TRBV7-9*01 TRBJ1-5*01 1.0 37.0 CIVREGGGADGLTF_CASSLAVGEGPQHF 68 4253 BZLF1-190-197 EBV 0.9 2156 BZLF1-190-197 118 4135 10 EBV BZLF1 RAKFKQLL effector memory T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-B*08:01 B2M MHCI -10002 chip0423_81912 7.74 13.83 Chip2 T1D_6 T1D GGTGTCGTGACCATTGGTGCAGGTTGCCTCGGTCTTCTCTTCTTT GVVTIGAGCLGLLFF TRAV12-1*01 TRAJ42*01 3.0 10.0 TGCGCCAGCAGTCCGAAGAAAGAGAAGAATGAGCAGTTCTTC CASSPKKEKNEQFF TRBV4-3*01 TRBJ2-1*01 25.0 1316.0 GVVTIGAGCLGLLFF_CASSPKKEKNEQFF 1 3404 M1 FLU 0.83 1250 NEG 93 3311 7 InfluenzaA M1 GILGFVFTL transitional T cells between effector and memory populations PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*02:01 B2M MHCI -10003 chip0423_710639 9.13 8.18 Chip2 T1D_4 T1D _ 6746 5804 BZLF1-190-197 EBV 0.78 2156 BZLF1-190-197 128 5676 8 EBV BZLF1 RAKFKQLL effector memory T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-B*08:01 B2M MHCI -10004 chip0423_548416 8.83 11.81 Chip2 T1D_4 T1D _ 6746 4482 EBNA3A-158-166 EBV 0.83 444 NEG 95 4387 7 EBV EBNA3A QAKWRLQTL transitional T cells between effector and memory populations PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-B*08:01 B2M MHCI -10005 chip0423_518977 5.38 9.1 Chip2 T1D_4 T1D TGTGCTGGAGACGGTCGAACTGGGGCAAACAACCTCTTCTTT CAGDGRTGANNLFF TRAV36/DV7*01 TRAJ36*01 34.0 1957.0 TGCGCCAGCAGTGACGACGGGATGAACACTGAAGCTTTCTTT CASSDDGMNTEAFF TRBV10-2*01 TRBJ1-1*01 4.0 163.0 CAGDGRTGANNLFF_CASSDDGMNTEAFF 2 4647 EBV-LMP2A EBV 0.64 700 NEG 107 4540 6 EBV LMP2A CLGGLLTMV central memory T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*02:01 B2M MHCI -10006 chip0423_286774 6.06 13.82 Chip2 healthy_3 healthy TGCAGTGCCGATTCCTACCGGGACATTGATAACTATGGCTACACCTTC CSADSYRDIDNYGYTF TRBV20-1*01 TRBJ1-2*01 19.0 804.0 _CSADSYRDIDNYGYTF 8 5832 NP44-52 FLU 0.62 474 NP44-52 94 5738 7 InfluenzaA NP CTELKLSDY transitional T cells between effector and memory populations PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*01:01 B2M MHCI -10007 chip0423_732456 15.39 10.75 Chip2 healthy_4 healthy _ 6746 2744 BZLF1-190-197 EBV 0.88 2156 NEG 110 2634 12 EBV BZLF1 RAKFKQLL effector T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-B*08:01 B2M MHCI -10008 chip0423_780502 4.99 10.67 Chip2 healthy_4 healthy TGTGCCGTGTCTTACTCTGGGGGTTACCAGAAAGTTACCTTT CAVSYSGGYQKVTF TRAV8-1*01 TRAJ13*01 24.0 2010.0 CAVSYSGGYQKVTF_ 1 4160 M1 FLU 0.83 1250 NEG 104 4056 6 InfluenzaA M1 GILGFVFTL central memory T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*02:01 B2M MHCI -10009 chip0423_129488 -0.68 8.71 Chip2 healthy_3 healthy _ 6746 8066 GAD2-CLE-9 GAD65 0.47 4 GAD2-CLE-9 103 7963 4 HomoSapiens GAD2 CLELAEYLY Naive T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*01:01 B2M MHCI -10010 chip0423_116024 -2.66 9.09 Chip2 T1D_4 T1D TGTGCTGTCGGAGGAAGCCAAGGAAATCTCATCTTT CAVGGSQGNLIF TRAV41*01 TRAJ42*01 25.0 1998.0 CAVGGSQGNLIF_ 1 5454 ZNT8-293-300 ZNT8 0.7 17 NEG 111 5343 3 HomoSapiens ZNT8 LAVDGVLSV Naive T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*02:01 B2M MHCI -10011 chip0423_246682 -0.2 6.52 Chip2 healthy_3 healthy TGTGCAACGAGCGGGTCTAACTTTGGAAATGAGAAATTAACCTTT CATSGSNFGNEKLTF TRAV12-3*01 TRAJ48*01 49.0 1973.0 TGTGCCAGCAGTTACGTGCGCCCGTAGTTTCTCTGGAAACACCATATAGTTT CASSYVRPta??gtFSGNTI*F TRBV6-5*01 TRBJ1-3*01 9.0 158.0 CATSGSNFGNEKLTF_CASSYVRPta??gtFSGNTI*F 1 10226 PGT-178 PGT 0.56 1480 PGT-178 135 10091 3 HomoSapiens PGT LLAGIGTVPI Naive T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*02:01 B2M MHCI -10012 chip0423_666210 13.91 13.12 Chip2 T1D_6 T1D TGCATCCTCCCACTTGCTGGTGGTACTAGCTATGGAAAGCTGACATTT CILPLAGGTSYGKLTF TRAV26-2*01 TRAJ52*01 1.0 30.0 TGTGCCAGCAGCTTGGGACAGGCCTACGAGCAGTACTTC CASSLGQAYEQYF TRBV7-8*01 TRBJ2-7*01 21.0 1385.0 CILPLAGGTSYGKLTF_CASSLGQAYEQYF 308 2499 EBNA3A-193-201 EBV 0.67 1022 NEG 119 2380 12 EBV EBNA3A FLRGRAYGL effector T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-B*08:01 B2M MHCI -10013 chip0423_40985 5.8 10.41 Chip2 healthy_3 healthy TGTGTGGTGAACGGGGAAAATGCCAGACTCATGTTT CVVNGENARLMF TRAV12-1*01 TRAJ31*01 1.0 31.0 TGTGCCAGCAGCCGGACTAGTGATTGGAACACCGGGGAGCTGTTTTTT CASSRTSDWNTGELFF TRBV5-6*01 TRBJ2-2*01 27.0 1242.0 CVVNGENARLMF_CASSRTSDWNTGELFF 1 4907 NP44-52 FLU 0.8 474 NP44-52 113 4794 6 InfluenzaA NP CTELKLSDY central memory T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*01:01 B2M MHCI -10014 chip0423_738231 7.36 13.38 Chip2 T1D_4 T1D TGTGCCGTGAAGATGGATAGCAGCTATAAATTGATCTTC CAVKMDSSYKLIF TRAV12-2*01 TRAJ12*01 2.0 44.0 CAVKMDSSYKLIF_ 1 3513 PGT-178 PGT 0.42 1480 NEG 93 3420 7 HomoSapiens PGT LLAGIGTVPI transitional T cells between effector and memory populations PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*02:01 B2M MHCI -10015 chip0423_618256 9.71 10.02 Chip2 healthy_4 healthy TGTGCCAGCAGTTCCCAGAACAGGGAGGGAGAGACCCAGTACTTC CASSSQNREGETQYF TRBV12-3*01,TRBV12-4*01 TRBJ2-5*01 8.0 148.0 _CASSSQNREGETQYF 1 4694 BZLF1-190-197 EBV 1.0 2156 NEG 107 4587 9 EBV BZLF1 RAKFKQLL effector memory T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-B*08:01 B2M MHCI -10016 chip0423_354320 16.11 9.92 Chip2 healthy_4 healthy TGTGCTGTGGAAAAGAAGAACACCGACAAGCTCATCTTT CAVEKKNTDKLIF TRAV12-2*01,TRAV21*01 TRAJ34*01 31.0 1985.0 TGTGCCAGCAGCTTAAACGTCGGGGAGGGCGCAGGAAACACCATATATTTT CASSLNVGEGAGNTIYF TRBV7-6*01 TRBJ1-3*01 22.0 902.0 CAVEKKNTDKLIF_CASSLNVGEGAGNTIYF 3 2449 BZLF1-190-197 EBV 1.0 2156 NEG 109 2340 12 EBV BZLF1 RAKFKQLL effector T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-B*08:01 B2M MHCI -10017 chip0423_93838 6.25 13.43 Chip2 healthy_3 healthy TGTGCCCTGAGTTCTTATTCTGGGGGTTGCCAGCGTGTTACCTTT CALSSYSGGCQRVTF TRAV19*01 TRAJ13*01 6.0 144.0 CALSSYSGGCQRVTF_ 1 5545 NP44-52 FLU 0.86 474 NP44-52 110 5435 7 InfluenzaA NP CTELKLSDY transitional T cells between effector and memory populations PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*01:01 B2M MHCI -10018 chip0423_770371 14.31 9.59 Chip2 healthy_4 healthy TGTGGTCCGGTCACTTGTGGGGGCCGCCAAGGAGATCTCGTCTTT CGPVTCGGRQGDLVF TRAV17*01 TRAJ42*01 3.0 46.0 TGTGCCAGCAGCTTAAACGTCGGGGAGGGCGCAGGAAACACCATATATTTT CASSLNVGEGAGNTIYF TRBV7-6*01 TRBJ1-3*01 25.0 798.0 CGPVTCGGRQGDLVF_CASSLNVGEGAGNTIYF 1 2965 BZLF1-190-197 EBV 1.0 2156 NEG 116 2849 12 EBV BZLF1 RAKFKQLL effector T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-B*08:01 B2M MHCI -10019 chip0423_180825 6.44 11.91 Chip2 healthy_3 healthy _ 6746 7567 M1 FLU 0.5 1250 M1 102 7465 7 InfluenzaA M1 GILGFVFTL transitional T cells between effector and memory populations PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*02:01 B2M MHCI -10020 chip0423_97697 11.34 10.23 Chip2 healthy_4 healthy TGTGCCAGCAGGGTAGGCCGAGAACCCACCGGGGAGCTGTTTTTT CASRVGREPTGELFF TRBV3-1*01 TRBJ2-2*01 65.0 3438.0 _CASRVGREPTGELFF 13 4367 BZLF1-190-197 EBV 0.62 2156 NEG 113 4254 9 EBV BZLF1 RAKFKQLL effector memory T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-B*08:01 B2M MHCI -10021 chip0423_732134 -0.07 7.98 Chip2 healthy_4 healthy TGTGCCGCCTCGGCCGGAGGCTTCAAAACTATCTTT CAASAGGFKTIF TRAV12-2*01 TRAJ9*01 34.0 2941.0 CAASAGGFKTIF_ 1 6333 PGT-178 PGT 0.44 1480 PGT-178 105 6228 4 HomoSapiens PGT LLAGIGTVPI Naive T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*02:01 B2M MHCI -10022 chip0423_293336 -3.68 11.34 Chip2 T1D_4 T1D TGTGCCGTGCCTAACCAGGCAGGAACTGCTCTGATCTTT CAVPNQAGTALIF TRAV12-2*01 TRAJ15*01 25.0 1490.0 TGTGCCAGCTGTTACGGGGGGCTGGGGACTGAAGCTTTCTGT CASCYGGLGTEAFC TRBV6-2*01,TRBV6-3*01 TRBJ1-1*01 4.0 150.0 CAVPNQAGTALIF_CASCYGGLGTEAFC 1 5146 PGT-178 PGT 0.9 1480 PGT-178 114 5032 1 HomoSapiens PGT LLAGIGTVPI Naive T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*02:01 B2M MHCI -10023 chip0423_52360 8.98 7.51 Chip2 healthy_4 healthy TGTGCCAGCAGCTCCGGACAGGCCTACGAGCAGTACTTC CASSSGQAYEQYF TRBV7-8*01 TRBJ2-7*01 25.0 1013.0 _CASSSGQAYEQYF 49 10101 EBNA3A-193-201 EBV 0.67 1022 EBNA3A-193-201 122 9979 8 EBV EBNA3A FLRGRAYGL effector memory T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-B*08:01 B2M MHCI -10024 chip0423_588811 9.35 8.42 Chip2 T1D_4 T1D TGTGCTGTGAGAGACACGACGTGGGATGACAAGATCATCTTT CAVRDTTWDDKIIF TRAV3*01 TRAJ30*01 4.0 101.0 TGTGCCAGCAGCTTAGGAGGGGGAGAGGGGGCCAGTGAGCAGTTCTTC CASSLGGGEGASEQFF TRBV7-6*01 TRBJ2-1*01 15.0 867.0 CAVRDTTWDDKIIF_CASSLGGGEGASEQFF 12 6189 EBNA3A-193-201 EBV 0.62 1022 NEG 128 6061 8 EBV EBNA3A FLRGRAYGL effector memory T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-B*08:01 B2M MHCI -10025 chip0423_696639 -4.14 9.15 Chip2 healthy_3 healthy TGTGCCGTGAACATGGAGACTAGCAACTATAAACTGACATTT CAVNMETSNYKLTF TRAV12-2*01 TRAJ53*01 38.0 1966.0 CAVNMETSNYKLTF_ 1 5290 PGT-178 PGT 0.74 1480 PGT-178 101 5189 2 HomoSapiens PGT LLAGIGTVPI Naive T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*02:01 B2M MHCI -10026 chip0423_578438 11.7 10.72 Chip2 T1D_5 T1D TGTGCAGAGATGGAAACCTCCTACGACAAGGTGATGTTT CAEMETSYDKVMF TRAV13-2*01 TRAJ50*01 10.0 364.0 TGTGCCAGCAGCTCCTTAAGCGGGGGGGCAGGAAATGAGCAGTTCTTC CASSSLSGGAGNEQFF TRBV7-9*01 TRBJ2-1*01 7.0 186.0 CAEMETSYDKVMF_CASSSLSGGAGNEQFF 1 3496 BZLF1-190-197 EBV 0.67 2156 BZLF1-190-197 132 3364 9 EBV BZLF1 RAKFKQLL effector memory T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-B*08:01 B2M MHCI -10027 chip0423_371147 -3.63 13.64 Chip2 T1D_4 T1D TGTGTGGTGTTTTCAACTGGGGGTTACCAGAAAGTTACCTTT CVVFSTGGYQKVTF TRAV12-1*01 TRAJ13*01 59.0 3983.0 TGCAGCGTTTCGACAGGCCACAATGAGCAGTTCTTC CSVSTGHNEQFF TRBV29-1*01 TRBJ2-1*01 49.0 5189.0 CVVFSTGGYQKVTF_CSVSTGHNEQFF 1 3706 NP140-148 FLU 0.87 102 NP140-148 101 3605 1 InfluenzaA NP HSNLNDATY Naive T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*01:01 B2M MHCI -10028 chip0423_332024 6.94 13.21 Chip2 healthy_3 healthy _ 6746 3853 M1 FLU 0.47 1250 NEG 98 3755 7 InfluenzaA M1 GILGFVFTL transitional T cells between effector and memory populations PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*02:01 B2M MHCI -10029 chip0423_675412 7.51 12.18 Chip2 healthy_3 healthy TGTGCTCTGATTTTTTTCTGGTGGCTACAATAAGCTGATTTTT CALIFFW??tGYNKLIF TRAV19*01 TRAJ4*01 38.0 2011.0 TGTGCCAGCAGTGAAATGTGGGGAGCACCCCTCCACTTT CASSEMWGAPLHF TRBV2*01 TRBJ1-6*01 89.0 5417.0 CALIFFW??tGYNKLIF_CASSEMWGAPLHF 1 6671 NP44-52 FLU 0.74 474 NP44-52 97 6574 7 InfluenzaA NP CTELKLSDY transitional T cells between effector and memory populations PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*01:01 B2M MHCI -10030 chip0423_544506 -1.7 8.89 Chip2 healthy_3 healthy TGTGCTCTGAGTGAATACTGGAGCCAATAGTAAGCTGACATTT CALSEYW??aANSKLTF TRAV9-2*01 TRAJ56*01 15.0 435.0 TGTGCCAGCAGCTTAGTGGGGGGCCACGAAAGCTCCTACGAGCAGTACTTC CASSLVGGHESSYEQYF TRBV11-2*01 TRBJ2-7*01 9.0 319.0 CALSEYW??aANSKLTF_CASSLVGGHESSYEQYF 1 6416 ZNT8-16-24 ZNT8 0.69 39 NEG 105 6311 3 HomoSapiens ZNT8 KMYAFTLES Naive T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*02:01 B2M MHCI -10031 chip0423_447798 4.89 12.09 Chip2 healthy_4 healthy _ 6746 2871 M1 FLU 0.8 1250 NEG 125 2746 6 InfluenzaA M1 GILGFVFTL central memory T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*02:01 B2M MHCI -10032 chip0423_19070 -3.04 12.85 Chip2 healthy_3 healthy _ 6746 4279 GAD65-114-122 GAD65 0.62 63 NEG 120 4159 1 HomoSapiens GAD65 VMNILLQYV Naive T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*02:01 B2M MHCI -10033 chip0423_822394 5.74 11.94 Chip2 healthy_5 healthy _ 6746 5344 BZLF1-190-197 EBV 0.83 2156 NEG 106 5238 7 EBV BZLF1 RAKFKQLL transitional T cells between effector and memory populations PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-B*08:01 B2M MHCI -10034 chip0423_651310 9.1 9.16 Chip2 healthy_4 healthy TGCAGCGCCGGATCAGGTGAAGGCTACGAGCAGTACTTC CSAGSGEGYEQYF TRBV29-1*01 TRBJ2-7*01 108.0 8482.0 _CSAGSGEGYEQYF 3 5291 BZLF1-190-197 EBV 0.67 2156 NEG 115 5176 8 EBV BZLF1 RAKFKQLL effector memory T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-B*08:01 B2M MHCI -10035 chip0423_642509 -1.28 9.76 Chip2 T1D_5 T1D TGTGCCCCGAACACCGGTAACCAGTTCTATTTT CAPNTGNQFYF TRAV38-1*01 TRAJ49*01 1.0 77.0 CAPNTGNQFYF_ 1 5394 G6PC2-LTS-10 IGRP 0.89 59 G6PC2-LTS-10 109 5285 3 HomoSapiens G6PC2 LTSLTILQLY Naive T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*01:01 B2M MHCI -10036 chip0423_274264 -1.81 12.19 Chip2 T1D_5 T1D _ 6746 3470 GFAP-HLK-8 GFAP 0.67 28 NEG 103 3367 1 HomoSapiens GFAP HLKRNIVV Naive T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-B*08:01 B2M MHCI -10037 chip0423_429490 4.86 9.44 Chip2 T1D_4 T1D _ 6746 4312 M1-ALA FLU 0.77 10 M1-ALA 105 4207 6 InfluenzaA M1 ALASCMGLIY central memory T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*01:01 B2M MHCI -10038 chip0423_232076 5.63 12.68 Chip2 healthy_3 healthy TGTGCCAGCAGTGAAATGTGGGGAGCACCCCTCCACTTT CASSEMWGAPLHF TRBV2*01 TRBJ1-6*01 46.0 2479.0 _CASSEMWGAPLHF 14 5557 NP44-52 FLU 0.87 474 NP44-52 109 5448 7 InfluenzaA NP CTELKLSDY transitional T cells between effector and memory populations PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*01:01 B2M MHCI -10039 chip0423_647178 10.54 7.3 Chip2 healthy_4 healthy _ 6746 5327 BZLF1-190-197 EBV 1.0 2156 NEG 120 5207 10 EBV BZLF1 RAKFKQLL effector memory T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-B*08:01 B2M MHCI -10040 chip0423_82863 10.49 11.53 Chip2 healthy_3 healthy _ 6746 3948 EBV-BRLF1 EBV 0.75 1264 EBV-BRLF1 116 3832 9 EBV BRLF1 YVLDHLIVV effector memory T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*02:01 B2M MHCI -10041 chip0423_624104 11.38 7.36 Chip2 healthy_4 healthy TGTGCCAGCAGCTCCGGACAGGCCTACGAGCAGTACTTC CASSSGQAYEQYF TRBV7-8*01 TRBJ2-7*01 20.0 999.0 _CASSSGQAYEQYF 49 4171 EBNA3A-193-201 EBV 0.64 1022 NEG 126 4045 10 EBV EBNA3A FLRGRAYGL effector memory T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-B*08:01 B2M MHCI -10042 chip0423_501794 10.74 9.55 Chip2 T1D_5 T1D TGTGCAGCAAGCGAACATAACCAGTTCTATTTT CAASEHNQFYF TRAV13-1*01 TRAJ49*01 20.0 1386.0 TGTGCCAGCAGTTTTCCTAGTCTTCATACGCAGTATTTT CASSFPSLHTQYF TRBV12-3*01,TRBV12-4*01 TRBJ2-3*01 4.0 226.0 CAASEHNQFYF_CASSFPSLHTQYF 3 3693 BZLF1-190-197 EBV 0.62 2156 NEG 116 3577 9 EBV BZLF1 RAKFKQLL effector memory T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-B*08:01 B2M MHCI -10043 chip0423_266846 9.81 9.98 Chip2 T1D_4 T1D TGTGCTGTGAGACTTAGGAGGGGGTGCTGCCGGACTCACCTTT CAVRLRR??gGAAGLTF TRAV3*01 TRAJ45*01 19.0 1316.0 CAVRLRR??gGAAGLTF_ 1 5502 BZLF1-190-197 EBV 0.85 2156 NEG 106 5396 9 EBV BZLF1 RAKFKQLL effector memory T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-B*08:01 B2M MHCI -10044 chip0423_310352 -3.73 9.37 Chip2 healthy_3 healthy TGTGCAATCTCTATATCTCACTTTGGGCCTGAGAGATTCCCCTTT CAISISHFGPERFPF TRAV12-3*01 TRAJ48*01 13.0 408.0 CAISISHFGPERFPF_ 1 6012 PGT-178 PGT 0.59 1480 PGT-178 127 5885 2 HomoSapiens PGT LLAGIGTVPI Naive T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*02:01 B2M MHCI -10045 chip0423_252167 9.52 11.57 Chip2 healthy_4 healthy TGTGCCAGCAGGGTAGGCCGAGAACCCACCGGGGAGCTGTTTTTT CASRVGREPTGELFF TRBV3-1*01 TRBJ2-2*01 14.0 401.0 _CASRVGREPTGELFF 13 3477 BZLF1-190-197 EBV 0.67 2156 NEG 107 3370 7 EBV BZLF1 RAKFKQLL transitional T cells between effector and memory populations PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-B*08:01 B2M MHCI -10046 chip0423_777037 6.65 12.84 Chip2 T1D_5 T1D TGTGCTTCCAGGAATTCCGGGTATGCACTCAACTTC CASRNSGYALNF TRAV38-1*01 TRAJ41*01 13.0 1463.0 CASRNSGYALNF_ 1 4152 IAPP-STN-9 IAPP 1.0 48 IAPP-STN-9 96 4056 7 HomoSapiens IAPP STNVGSNTY transitional T cells between effector and memory populations PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*01:01 B2M MHCI -10047 chip0423_666134 6.39 11.78 Chip2 T1D_4 T1D TGTGCAGGAGCGGGGGGAGGAAGCCAAGGAAATCTCATCTTT CAGAGGGSQGNLIF TRAV27*01 TRAJ42*01 30.0 1728.0 TGTGCCAGTAGTGGACGGTCTTCGGAGCCCCAGCATTTT CASSGRSSEPQHF TRBV19*01 TRBJ1-5*01 22.0 1101.0 CAGAGGGSQGNLIF_CASSGRSSEPQHF 1 6582 M1 FLU 0.94 1250 M1 121 6461 7 InfluenzaA M1 GILGFVFTL transitional T cells between effector and memory populations PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*02:01 B2M MHCI -10048 chip0423_597256 7.71 11.48 Chip2 healthy_4 healthy TGTGCTGTGGAGGATCAAGGGAGATCTTATAACACCGACAAGCTCATCTTT CAVEDQGRSYNTDKLIF TRAV2*01 TRAJ34*01 24.0 379.0 CAVEDQGRSYNTDKLIF_ 15 4963 BZLF1-190-197 EBV 0.9 2156 NEG 121 4842 7 EBV BZLF1 RAKFKQLL transitional T cells between effector and memory populations PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-B*08:01 B2M MHCI -10049 chip0423_517751 9.59 10.57 Chip2 healthy_4 healthy TGTGCCAGCAGCACGACCCGCGCAGGGACTTGGCCCCTCCACTTT CASSTTRAGTWPLHF TRBV7-9*01 TRBJ1-6*01 10.0 516.0 _CASSTTRAGTWPLHF 18 5086 BZLF1-190-197 EBV 0.75 2156 NEG 84 5002 9 EBV BZLF1 RAKFKQLL effector memory T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-B*08:01 B2M MHCI -10050 chip0423_673597 11.9 7.26 Chip2 healthy_4 healthy TGTGCCAGCAGCTTAAACGTCGGGGAGGGCGCAGGAAACACCATATATTTT CASSLNVGEGAGNTIYF TRBV7-6*01 TRBJ1-3*01 16.0 652.0 _CASSLNVGEGAGNTIYF 9 4868 BZLF1-190-197 EBV 1.0 2156 NEG 110 4758 10 EBV BZLF1 RAKFKQLL effector memory T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-B*08:01 B2M MHCI -10051 chip0423_559148 15.38 9.65 Chip2 healthy_3 healthy _ 6746 4127 GAD65-114-122 GAD65 0.76 63 GAD65-114-122 123 4004 12 HomoSapiens GAD65 VMNILLQYV effector T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*02:01 B2M MHCI -10052 chip0423_802731 -3.02 13.33 Chip2 T1D_5 T1D TGTGCCAGCAGCCAGTGGGACGGTAATTCACCCCTCCACTTT CASSQWDGNSPLHF TRBV7-9*01 TRBJ1-6*01 12.0 491.0 _CASSQWDGNSPLHF 1 3867 INS-GSH-9 INS 0.74 19 INS-GSH-9 102 3765 1 HomoSapiens INS GSHLVEALY Naive T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*01:01 B2M MHCI -10053 chip0423_685308 -1.98 8.32 Chip2 T1D_6 T1D TGTGCAATGACCCTCTCTAACTTTGGAAATGAGAAATTAACCTTT CAMTLSNFGNEKLTF TRAV12-3*01 TRAJ48*01 54.0 2024.0 TGTGCCAGCAGCTTTTCCCGGGACAGACGGCTCCGGGGAGCTGTTTTTT CASSFSRD??aDGSGELFF TRBV7-6*01 TRBJ2-2*01 18.0 938.0 CAMTLSNFGNEKLTF_CASSFSRD??aDGSGELFF 1 5930 PGT-178 PGT 0.78 1480 PGT-178 102 5828 4 HomoSapiens PGT LLAGIGTVPI Naive T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*02:01 B2M MHCI -10054 chip0423_640061 -3.83 9.64 Chip2 healthy_4 healthy TGTGCCTCGGGGGGGGGAGGAAAGCTTATCTTC CASGGGGKLIF TRAV12-1*01 TRAJ23*01 11.0 1902.0 TGTGCCAGCAGCCAAGGTTCCGGAGGGCTCCCCTACAATGAGCAGTTCTTC CASSQGSGGLPYNEQFF TRBV3-1*01 TRBJ2-1*01 9.0 409.0 CASGGGGKLIF_CASSQGSGGLPYNEQFF 1 4485 PGT-178 PGT 0.73 1480 NEG 103 4382 2 HomoSapiens PGT LLAGIGTVPI Naive T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*02:01 B2M MHCI -10055 chip0423_484444 -1.76 7.3 Chip2 healthy_4 healthy TGTGCTTATAGGAGCCCTGAGGCCACCGACAAACTCATCTTT CAYRSPEATDKLIF TRAV38-2/DV8*01 TRAJ34*01 3.0 225.0 CAYRSPEATDKLIF_ 1 4675 EBV-LMP2A EBV 1.0 700 NEG 97 4578 3 EBV LMP2A CLGGLLTMV Naive T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*02:01 B2M MHCI -10056 chip0423_411574 -2.97 10.55 Chip2 T1D_4 T1D TGTGCGTCCGCTATATCTAACTTTGGAAATGAGAAATTAACCTTT CASAISNFGNEKLTF TRAV12-3*01 TRAJ48*01 45.0 1647.0 CASAISNFGNEKLTF_ 1 5109 PGT-178 PGT 0.71 1480 NEG 125 4984 3 HomoSapiens PGT LLAGIGTVPI Naive T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*02:01 B2M MHCI -10057 chip0423_164386 13.61 9.43 Chip2 healthy_4 healthy TGTGCAGCAAGTGAAACCTCCTACGACAAGGTGATATTT CAASETSYDKVIF TRAV13-1*01 TRAJ50*01 1.0 26.0 TGTGCCAGCAGCACGACCCGCGCAGGGACTTGGCCCCTCCACTTT CASSTTRAGTWPLHF TRBV7-9*01 TRBJ1-6*01 9.0 286.0 CAASETSYDKVIF_CASSTTRAGTWPLHF 10 3900 BZLF1-190-197 EBV 0.67 2156 NEG 113 3787 12 EBV BZLF1 RAKFKQLL effector T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-B*08:01 B2M MHCI -10058 chip0423_525683 -1.78 11.28 Chip2 T1D_4 T1D TGTGCCAGCAGCGGACAGGGCTGGATTGAAGCTTTCTTT CASSGQGWIEAFF TRBV27*01 TRBJ1-1*01 23.0 774.0 _CASSGQGWIEAFF 1 5464 NP44-52 FLU 0.81 474 NEG 116 5348 3 InfluenzaA NP CTELKLSDY Naive T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*01:01 B2M MHCI -10059 chip0423_354490 -3.01 7.75 Chip2 T1D_4 T1D TGTGTTGTGAGTGTGAATAACAATGCCAGACCCATGTTT CVVSVNNNARPMF TRAV8-2*01 TRAJ31*01 41.0 2020.0 TGTGCCAGCAGTCAAACCGGGACAGGGCATCAGCCCCAGCATTTT CASSQTGTGHQPQHF TRBV28*01 TRBJ1-5*01 24.0 666.0 CVVSVNNNARPMF_CASSQTGTGHQPQHF 1 7102 PGT-178 PGT 0.7 1480 PGT-178 111 6991 2 HomoSapiens PGT LLAGIGTVPI Naive T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*02:01 B2M MHCI -10060 chip0423_652483 14.39 11.09 Chip2 T1D_4 T1D _ 6746 2680 BZLF1-190-197 EBV 1.0 2156 BZLF1-190-197 118 2562 12 EBV BZLF1 RAKFKQLL effector T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-B*08:01 B2M MHCI -10061 chip0423_569890 8.5 8.52 Chip2 T1D_6 T1D TGCATCCTCCCACTTGCTGGTGGTACTAGCTATGGAAAGCTGACATTT CILPLAGGTSYGKLTF TRAV26-2*01 TRAJ52*01 15.0 753.0 TGTGCCAGCAGCTTGGGACAGGCCTACGAGCAGTACTTC CASSLGQAYEQYF TRBV7-8*01 TRBJ2-7*01 15.0 1015.0 CILPLAGGTSYGKLTF_CASSLGQAYEQYF 308 4265 EBNA3A-193-201 EBV 0.43 1022 NEG 150 4115 8 EBV EBNA3A FLRGRAYGL effector memory T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-B*08:01 B2M MHCI -10062 chip0423_502177 7.81 11.8 Chip2 healthy_3 healthy TTTGCCAGCAGCTTTGGGGTTGGGGCTACAGAAGAGACCCAGTACTTC FASSFGVGATEETQYF TRBV5-4*01 TRBJ2-5*01 10.0 441.0 _FASSFGVGATEETQYF 1 5039 NP44-52 FLU 0.91 474 NP44-52 106 4933 7 InfluenzaA NP CTELKLSDY transitional T cells between effector and memory populations PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*01:01 B2M MHCI -10063 chip0423_455978 6.37 12.16 Chip2 T1D_6 T1D TGTGCCAGCAGCGCCAGGGATGACTACGACGAGCAGTACTTC CASSARDDYDEQYF TRBV9*01 TRBJ2-7*01 29.0 1666.0 _CASSARDDYDEQYF 1 5374 M1 FLU 0.9 1250 NEG 119 5255 7 InfluenzaA M1 GILGFVFTL transitional T cells between effector and memory populations PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*02:01 B2M MHCI -10064 chip0423_756696 -4.52 8.3 Chip2 T1D_4 T1D _ 6746 4870 PGT-178 PGT 0.5 1480 PGT-178 102 4768 2 HomoSapiens PGT LLAGIGTVPI Naive T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*02:01 B2M MHCI -10065 chip0423_821387 15.99 12.07 Chip2 T1D_5 T1D TGTGCCAGCTCCCAGTTGGGGGGGGTTTACAATGAGCAGTTCTTC CASSQLGGVYNEQFF TRBV7-9*01 TRBJ2-1*01 1.0 93.0 _CASSQLGGVYNEQFF 13 1987 BZLF1-190-197 EBV 0.5 2156 BZLF1-190-197 109 1878 12 EBV BZLF1 RAKFKQLL effector T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-B*08:01 B2M MHCI -10066 chip0423_720650 6.55 12.37 Chip2 healthy_3 healthy _ 6746 7812 NP44-52 FLU 0.94 474 NP44-52 112 7700 7 InfluenzaA NP CTELKLSDY transitional T cells between effector and memory populations PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*01:01 B2M MHCI -10067 chip0423_688257 8.06 9.93 Chip2 T1D_5 T1D TGTGCCGTGGGGGGGGGCCCTAACGACTACAAGCTCAGCTTT CAVGGGPNDYKLSF TRAV8-1*01 TRAJ20*01 21.0 852.0 TGTGCCAGCAGTTCCGGACAGGAGAATGAAAAACTGTTTTTT CASSSGQENEKLFF TRBV3-1*01 TRBJ1-4*01 28.0 1035.0 CAVGGGPNDYKLSF_CASSSGQENEKLFF 2 6592 BZLF1-190-197 EBV 0.75 2156 NEG 108 6484 8 EBV BZLF1 RAKFKQLL effector memory T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-B*08:01 B2M MHCI -10068 chip0423_640620 6.82 11.69 Chip2 healthy_3 healthy TGTGCTGTGAGAGACTCCTTCTCGTATTCCGGAGGAGGTGCTGACGGACTCACCTTT CAVRDSFSYSGGGADGLTF TRAV3*01 TRAJ45*01 107.0 2668.0 TGCAGTGCTAGAGATGGGGGAATCAATCAGCCCCAGCATTTT CSARDGGINQPQHF TRBV20-1*01 TRBJ1-5*01 46.0 2084.0 CAVRDSFSYSGGGADGLTF_CSARDGGINQPQHF 1 5814 PB1-590-599 FLU 0.5 37 NEG 83 5731 7 InfluenzaA PB1 LVSDGGPNLY transitional T cells between effector and memory populations PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*01:01 B2M MHCI -10069 chip0423_271865 -3.08 13.25 Chip2 healthy_4 healthy TGTGCCGTCTATAATGCAGGCAACATGCTCACCTTT CAVYNAGNMLTF TRAV12-2*01 TRAJ39*01 1.0 18.0 CGTGCCAGCAGTTACTCGATTAACGAGCAGTACTTC RASSYSINEQYF TRBV6-5*01 TRBJ2-7*01 12.0 515.0 CAVYNAGNMLTF_RASSYSINEQYF 1 3827 IGRP-152-160-WLI IGRP 0.71 27 NEG 113 3714 1 HomoSapiens IGRP FLWSVFWLI Naive T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*02:01 B2M MHCI -10070 chip0423_85895 11.98 7.13 Chip2 T1D_5 T1D TGTGCCAGCAGCTTAGTCCTGGGACGCGAGCAGTACTTC CASSLVLGREQYF TRBV7-2*01 TRBJ2-7*01 32.0 1572.0 _CASSLVLGREQYF 1 3590 BZLF1-190-197 EBV 1.0 2156 NEG 144 3446 10 EBV BZLF1 RAKFKQLL effector memory T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-B*08:01 B2M MHCI -10071 chip0423_510369 -4.98 9.28 Chip2 healthy_3 healthy TGTGCCAGCAGCTTAGTGGTTGAGGGCAGGGTTAACACTGAAGCTTTCTTT CASSLVVEGRVNTEAFF TRBV11-2*01 TRBJ1-1*01 22.0 571.0 _CASSLVVEGRVNTEAFF 1 4947 PGT-178 PGT 0.43 1480 PGT-178 110 4837 2 HomoSapiens PGT LLAGIGTVPI Naive T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*02:01 B2M MHCI -10072 chip0423_801545 6.93 13.54 Chip2 T1D_6 T1D TGTGCTGTGGGGGCCTTCCGTCCTGGTGGCTTCAATACTGTCTTT CAVGAFRPGGFNTVF TRAV3*01 TRAJ9*01 13.0 426.0 CAVGAFRPGGFNTVF_ 1 4287 M1 FLU 0.95 1250 M1 112 4175 7 InfluenzaA M1 GILGFVFTL transitional T cells between effector and memory populations PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*02:01 B2M MHCI -10073 chip0423_118658 -2.13 8.46 Chip2 T1D_4 T1D TGTGCCAGCAGTGGCGGGGCCAGGGACTACACCTTC CASSGGARDYTF TRBV28*01 TRBJ1-2*01 5.0 563.0 _CASSGGARDYTF 1 5753 GFAP-LRL-8 GFAP 0.74 18 GFAP-LRL-8 136 5617 3 HomoSapiens GFAP LRLRLDQL Naive T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-B*08:01 B2M MHCI -10074 chip0423_776021 -4.0 9.72 Chip2 T1D_6 T1D TGTGCTGTGAGTATAGGATATGGAGGAAGCCAAGGAAATCTCATCTTT CAVSIGYGGSQGNLIF TRAV8-3*01 TRAJ42*01 51.0 1885.0 TGTGCCAGCAGCGGGGGGGTTCAGTCAAGCTACGAGCAGTACTTC CASSGGVQSSYEQYF TRBV9*01 TRBJ2-7*01 1.0 65.0 CAVSIGYGGSQGNLIF_CASSGGVQSSYEQYF 1 6048 GAD2-FQQ-9 GAD65 0.54 10 NEG 122 5926 2 HomoSapiens GAD2 FQQDKHYDL Naive T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-B*08:01 B2M MHCI -10075 chip0423_244343 16.05 10.1 Chip2 healthy_3 healthy TGTGCCGGGGGATGGTTGTGCTCCTCACCACCTCATCTTT CAGGWLtg??ctPHHLIF TRAV1-2*01 TRAJ32*01 10.0 548.0 TGTGCCAGCAGTGAAATGTGGGGAGCACCCCTCCACTTT CASSEMWGAPLHF TRBV2*01 TRBJ1-6*01 45.0 2968.0 CAGGWLtg??ctPHHLIF_CASSEMWGAPLHF 1 3468 NP44-52 FLU 0.89 474 NP44-52 112 3356 12 InfluenzaA NP CTELKLSDY effector T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*01:01 B2M MHCI -10076 chip0423_846241 5.14 10.84 Chip2 T1D_6 T1D _ 6746 7450 EBV-LMP2-FLY EBV 0.89 355 EBV-LMP2-FLY 93 7357 6 EBV LMP2 FLYALALLL central memory T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*02:01 B2M MHCI -10077 chip0423_615937 -0.87 8.91 Chip2 T1D_5 T1D TGTGCTTTCATGAAGCTTTATTCAGGAAACACACCTCTTGTCTTT CAFMKLYSGNTPLVF TRAV38-1*01 TRAJ29*01 9.0 321.0 TGCAGTGCTAGCTGGACAGGGACGAACACCGGGGAGCTGTTTTTT CSASWTGTNTGELFF TRBV20-1*01 TRBJ2-2*01 3.0 59.0 CAFMKLYSGNTPLVF_CSASWTGTNTGELFF 1 6687 ZNT8-VTD-9 ZNT8 0.73 65 NEG 103 6584 4 HomoSapiens ZNT8 VTDAAHLLI Naive T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*01:01 B2M MHCI -10078 chip0423_614629 11.91 10.95 Chip2 T1D_4 T1D TGTGCCAGCAGCTTAACGGTTCTGGCAGGTCCAAACACTGAAGCTTTCTTT CASSLTVLAGPNTEAFF TRBV7-3*01 TRBJ1-1*01 41.0 1537.0 _CASSLTVLAGPNTEAFF 32 2950 BZLF1-190-197 EBV 0.97 2156 BZLF1-190-197 140 2810 9 EBV BZLF1 RAKFKQLL effector memory T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-B*08:01 B2M MHCI -10079 chip0423_538548 -3.44 10.94 Chip2 healthy_4 healthy TGCGCCAGCAGCTCGACAGGGTCCGGGGAGCTGTTTTTT CASSSTGSGELFF TRBV5-1*01 TRBJ2-2*01 25.0 1451.0 _CASSSTGSGELFF 1 4377 EBNA3A-158-166 EBV 1.0 444 NEG 95 4282 4 EBV EBNA3A QAKWRLQTL Naive T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-B*08:01 B2M MHCI -10080 chip0423_522158 11.3 8.7 Chip2 T1D_5 T1D TGTGCTGTGAGGGTGGGTCTTTGGAAATGAGAAATTAACCTTT CAVRVGL??tGNEKLTF TRAV21*01 TRAJ48*01 12.0 370.0 CAVRVGL??tGNEKLTF_ 1 4068 BZLF1-190-197 EBV 0.76 2156 BZLF1-190-197 104 3964 10 EBV BZLF1 RAKFKQLL effector memory T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-B*08:01 B2M MHCI -10081 chip0423_661635 11.35 8.82 Chip2 T1D_6 T1D TGTGCCAGCACTTCGACAGAAACCGTCGATGGCTACACCTTC CASTSTETVDGYTF TRBV5-4*01 TRBJ1-2*01 7.0 230.0 _CASTSTETVDGYTF 4 4249 EBNA3A-158-166 EBV 0.87 444 NEG 111 4138 10 EBV EBNA3A QAKWRLQTL effector memory T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-B*08:01 B2M MHCI -10082 chip0423_207067 11.93 6.86 Chip2 healthy_3 healthy TGTGCCAGCAGTAAACGGGGGGGGGGGGGTGGCTACACCTTC CASSKRGGGGGYTF TRBV6-1*01 TRBJ1-2*01 10.0 353.0 _CASSKRGGGGGYTF 1 5064 EBV-LMP2-FLY EBV 0.57 355 NEG 96 4968 10 EBV LMP2 FLYALALLL effector memory T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*02:01 B2M MHCI -10083 chip0423_171995 14.09 10.06 Chip2 healthy_4 healthy TGCATCCTTCCCCTAGCTGGTGGTACTAGCTATGGAAAGCTGACATTT CILPLAGGTSYGKLTF TRAV26-2*01 TRAJ52*01 36.0 1332.0 TGTGCCAGCAGCTCCGGACAGGCCTACGAGCAGTACTTC CASSSGQAYEQYF TRBV7-8*01 TRBJ2-7*01 15.0 881.0 CILPLAGGTSYGKLTF_CASSSGQAYEQYF 40 3130 EBNA3A-193-201 EBV 0.89 1022 NEG 109 3021 12 EBV EBNA3A FLRGRAYGL effector T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-B*08:01 B2M MHCI -10084 chip0423_804418 -3.18 8.23 Chip2 T1D_6 T1D TGCATCGTCAGAGTAACTAACTTTGGAAATGAGAAATTAACCTTT CIVRVTNFGNEKLTF TRAV26-1*01 TRAJ48*01 47.0 1948.0 CIVRVTNFGNEKLTF_ 1 5397 PGT-178 PGT 0.56 1480 NEG 95 5302 2 HomoSapiens PGT LLAGIGTVPI Naive T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*02:01 B2M MHCI -10085 chip0423_785543 12.09 12.38 Chip2 T1D_4 T1D TGTGCCAGCAGCTTAGCGGTCGGAGAAGGGCCCCAGCATTTT CASSLAVGEGPQHF TRBV7-9*01 TRBJ1-5*01 34.0 928.0 _CASSLAVGEGPQHF 113 3185 BZLF1-190-197 EBV 0.54 2156 BZLF1-190-197 92 3093 11 EBV BZLF1 RAKFKQLL effector T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-B*08:01 B2M MHCI -10086 chip0423_609364 16.31 10.54 Chip2 healthy_4 healthy TGTGCCGTGAAGGACACCGACAAGCTCATCTTT CAVKDTDKLIF TRAV8-1*01 TRAJ34*01 25.0 2029.0 TGTGCCAGCAGCGCAACAGGGGACTACTATGGCTACACCTTC CASSATGDYYGYTF TRBV3-1*01 TRBJ1-2*01 33.0 1568.0 CAVKDTDKLIF_CASSATGDYYGYTF 2 2876 EBV-BRLF1 EBV 0.95 1264 EBV-BRLF1 124 2752 12 EBV BRLF1 YVLDHLIVV effector T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*02:01 B2M MHCI -10087 chip0423_570056 10.83 11.51 Chip2 healthy_3 healthy TGTGCCAGCAACTTGGCTGGCGGGGAGATTGATGATACGCAGTATCTT CASNLAGGEIDDTQYL TRBV5-6*01 TRBJ2-3*01 20.0 1059.0 _CASNLAGGEIDDTQYL 1 3635 PGT-178 PGT 0.58 1480 PGT-178 102 3533 9 HomoSapiens PGT LLAGIGTVPI effector memory T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*02:01 B2M MHCI -10088 chip0423_486301 14.66 12.11 Chip2 healthy_4 healthy TGCGTCCTTCCCCTCGCTGGTGGTTCTCGCTATGGAAAGCTGACCTTT CVLPLAGGSRYGKLTF TRAV26-2*01 TRAJ52*01 21.0 551.0 TGTGCCAGCAGCTCCGGACAGGCCTACGAGCAGTACTTC CASSSGQAYEQYF TRBV7-8*01 TRBJ2-7*01 4.0 140.0 CVLPLAGGSRYGKLTF_CASSSGQAYEQYF 1 2252 EBNA3A-193-201 EBV 1.0 1022 NEG 110 2142 12 EBV EBNA3A FLRGRAYGL effector T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-B*08:01 B2M MHCI -10089 chip0423_64026 -3.21 8.64 Chip2 healthy_3 healthy TGCAGTGCTAGCGACGGACCAGGACAAGAGACCCAGTACTTC CSASDGPGQETQYF TRBV20-1*01 TRBJ2-5*01 26.0 1591.0 _CSASDGPGQETQYF 1 6612 GP160-311-320 HIV 0.52 109 NEG 94 6518 2 HIV-1 GP160 RGPGRAFVTI Naive T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*02:01 B2M MHCI -10090 chip0423_95054 10.56 13.77 Chip2 healthy_3 healthy _ 6746 2456 M1 FLU 0.85 1250 NEG 103 2353 11 InfluenzaA M1 GILGFVFTL effector T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*02:01 B2M MHCI -10091 chip0423_853817 6.29 13.79 Chip2 healthy_3 healthy _ 6746 4269 NP44-52 FLU 0.53 474 NP44-52 121 4148 7 InfluenzaA NP CTELKLSDY transitional T cells between effector and memory populations PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*01:01 B2M MHCI -10092 chip0423_605785 -3.3 7.91 Chip2 T1D_5 T1D TGTGCATTGGGAGGGGGCCGGTCGGGCTTTCAGAGACGTGTATTT CALGGGRSGFQRRVF TRAV14/DV4*01 TRAJ8*01 20.0 908.0 TGTGCCAGCAGCTTAGGGAGAGACACTGAAGCTTTCTTT CASSLGRDTEAFF TRBV7-6*01 TRBJ1-1*01 25.0 1350.0 CALGGGRSGFQRRVF_CASSLGRDTEAFF 1 7086 PTPRN-AAL-9 PTPRN 0.43 1 NEG 118 6968 2 HomoSapiens PTPRN AALQRLAAV Naive T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-B*08:01 B2M MHCI -10093 chip0423_278137 5.96 13.83 Chip2 healthy_3 healthy _ 6746 6216 M1 FLU 0.58 1250 M1 121 6095 7 InfluenzaA M1 GILGFVFTL transitional T cells between effector and memory populations PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*02:01 B2M MHCI -10094 chip0423_28203 -3.86 10.13 Chip2 healthy_3 healthy TGTGCCATCAGCCCACACGGACAGTACGAGCAGTACTTC CAISPHGQYEQYF TRBV10-3*01 TRBJ2-7*01 77.0 4002.0 _CAISPHGQYEQYF 1 5127 IGRP-265-273 IGRP 0.78 34 NEG 119 5008 2 HomoSapiens IGRP VLFGLGFAI Naive T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*02:01 B2M MHCI -10095 chip0423_10248 8.25 10.81 Chip2 T1D_5 T1D TGTGCCAGCAGCTCCTTAAGCGGGGGGGCAGGAAATGAGCAGTCCTTC CASSSLSGGAGNEQSF TRBV7-9*01 TRBJ2-1*01 47.0 2830.0 _CASSSLSGGAGNEQSF 1 6852 BZLF1-190-197 EBV 0.52 2156 NEG 122 6730 7 EBV BZLF1 RAKFKQLL transitional T cells between effector and memory populations PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-B*08:01 B2M MHCI -10096 chip0423_688971 11.7 6.75 Chip2 T1D_5 T1D TGTGCAGCAACTGAAACCTCCTACGACAAGGTGATATTT CAATETSYDKVIF TRAV13-1*01 TRAJ50*01 23.0 1581.0 TGTGCCAGCAGCCGCCTAGGCATGAACACTGAAGCTTTCTTT CASSRLGMNTEAFF TRBV7-9*01 TRBJ1-1*01 49.0 2307.0 CAATETSYDKVIF_CASSRLGMNTEAFF 1 5787 BZLF1-190-197 EBV 0.89 2156 BZLF1-190-197 135 5652 10 EBV BZLF1 RAKFKQLL effector memory T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-B*08:01 B2M MHCI -10097 chip0423_514512 15.08 11.38 Chip2 T1D_6 T1D TGCAGCGTGGGGACAGGGGGCACTAATGAAAAACTGTTTTTT CSVGTGGTNEKLFF TRBV29-1*01 TRBJ1-4*01 4.0 72.0 _CSVGTGGTNEKLFF 638 2785 EBV-BLMF1 EBV 0.78 2531 NEG 119 2666 12 EBV BLMF1 GLCTLVAML effector T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*02:01 B2M MHCI -10098 chip0423_169688 -2.72 10.27 Chip2 T1D_4 T1D TGTGCCAGCAGCCCGGGACCAGGCAATGAGCAGTTCTTC CASSPGPGNEQFF TRBV7-9*01 TRBJ2-1*01 51.0 4173.0 _CASSPGPGNEQFF 1 5122 ZNT8-16-24 ZNT8 0.55 39 NEG 101 5021 3 HomoSapiens ZNT8 KMYAFTLES Naive T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*02:01 B2M MHCI -10099 chip0423_459388 11.43 10.21 Chip2 healthy_5 healthy TGTGCTCTCGAGGAGGACAATGCCAGACTCATGTTT CALEEDNARLMF TRAV38-1*01 TRAJ31*01 15.0 1678.0 TGTGCCAGCAGTTTACGTCTCTCCTACGAGCAGTACTTC CASSLRLSYEQYF TRBV27*01 TRBJ2-7*01 6.0 703.0 CALEEDNARLMF_CASSLRLSYEQYF 2 2846 BZLF1-190-197 EBV 0.67 2156 NEG 132 2714 9 EBV BZLF1 RAKFKQLL effector memory T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-B*08:01 B2M MHCI -10100 chip0423_821407 5.5 11.41 Chip2 T1D_6 T1D TGCGCCAGCAGTGACATTAGGGAGGGGCAGGGTGAAGCTTTCTTT CASSDIREGQGEAFF TRBV10-2*01 TRBJ1-1*01 43.0 1999.0 _CASSDIREGQGEAFF 37 6530 EBNA3A-158-166 EBV 1.0 444 NEG 125 6405 6 EBV EBNA3A QAKWRLQTL central memory T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-B*08:01 B2M MHCI -10101 chip0423_881392 -4.23 8.31 Chip2 T1D_5 T1D TGCAGCGCAGCCGGAGGAAACACCATATATTTT CSAAGGNTIYF TRBV29-1*01 TRBJ1-3*01 141.0 8733.0 _CSAAGGNTIYF 1 5261 EBNA3A-158-166 EBV 0.67 444 NEG 106 5155 2 EBV EBNA3A QAKWRLQTL Naive T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-B*08:01 B2M MHCI -10102 chip0423_832745 4.89 11.58 Chip2 healthy_3 healthy TGTGCCGTGAACGGAGGAAGCCAAGGAAATCTCATCTTT CAVNGGSQGNLIF TRAV12-2*01 TRAJ42*01 36.0 2027.0 TGTGCCAGCAGTTACCTTTGGTCCGAGCAGTACTTC CASSYLWSEQYF TRBV6-2*01,TRBV6-3*01 TRBJ2-7*01 14.0 1337.0 CAVNGGSQGNLIF_CASSYLWSEQYF 4 3859 MART1-ALA MART1 0.6 269 NEG 90 3769 6 HomoSapiens MART1 ALAGIGILTV central memory T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*02:01 B2M MHCI -10103 chip0423_167481 11.4 7.9 Chip2 healthy_4 healthy TGCATCCTTCCCCTAGCTGGTGGTACTAGCTATGGAAAGCTGACATTT CILPLAGGTSYGKLTF TRAV26-2*01 TRAJ52*01 66.0 3230.0 TGTGCCAGCAGCTCCGGACAGGCCTACGAGCAGTACTTC CASSSGQAYEQYF TRBV7-8*01 TRBJ2-7*01 47.0 2667.0 CILPLAGGTSYGKLTF_CASSSGQAYEQYF 40 3101 EBNA3A-193-201 EBV 1.0 1022 NEG 115 2986 10 EBV EBNA3A FLRGRAYGL effector memory T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-B*08:01 B2M MHCI -10104 chip0423_112440 4.77 11.03 Chip2 healthy_3 healthy TGTGCCGTGAACCAGGGAGGAAAGCTTATCTTC CAVNQGGKLIF TRAV12-2*01 TRAJ23*01 21.0 2032.0 TGTGCCAGCAGCCCCGATAGCGGGATGGATGAGCAGTTCTTC CASSPDSGMDEQFF TRBV7-9*01 TRBJ2-1*01 27.0 1999.0 CAVNQGGKLIF_CASSPDSGMDEQFF 1 3975 PGT-178 PGT 0.86 1480 NEG 112 3863 6 HomoSapiens PGT LLAGIGTVPI central memory T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*02:01 B2M MHCI -10105 chip0423_383961 -2.19 12.6 Chip2 T1D_5 T1D TGCGCCGCACCCCATCCCGCAGGCACCTACAAATACATCTTT CAAPHPAGTYKYIF TRAV29/DV5*01 TRAJ40*01 12.0 728.0 TGCGCCAGCAGCCAAGGGCCCGGGTACGGAGATACGCAGTATTTT CASSQGPGYGDTQYF TRBV4-1*01 TRBJ2-3*01 15.0 458.0 CAAPHPAGTYKYIF_CASSQGPGYGDTQYF 1 4709 INS-MAL-8 INS 0.52 38 NEG 83 4626 1 HomoSapiens INS MALWMRLL Naive T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-B*08:01 B2M MHCI -10106 chip0423_670815 5.14 12.23 Chip2 healthy_4 healthy TGTGCCAGCAGCGTAGGTTGGACAGGGACAGGCGAGACCCAGTACTTC CASSVGWTGTGETQYF TRBV9*01 TRBJ2-5*01 25.0 1250.0 _CASSVGWTGTGETQYF 4 2883 M1 FLU 0.88 1250 NEG 112 2771 6 InfluenzaA M1 GILGFVFTL central memory T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*02:01 B2M MHCI -10107 chip0423_504659 -0.6 8.74 Chip2 healthy_5 healthy TGTGTTGTGGAGTATCCAGGGGGGGTTACCTGAGCGTTACCTGT CVVEYPGg?gGYLSVTC TRAV2*01 TRAJ13*01 22.0 1198.0 CVVEYPGg?gGYLSVTC_ 1 7805 Nef13-20 HIV 0.56 19 NEG 103 7702 3 HIV-1 Nef WPTVRERM Naive T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-B*08:01 B2M MHCI -10108 chip0423_397693 -4.12 8.34 Chip2 T1D_6 T1D TGTGCCAGCAGTTACCCTCAGGGATACTATGGCTACACCTTC CASSYPQGYYGYTF TRBV12-3*01,TRBV12-4*01 TRBJ1-2*01 10.0 690.0 _CASSYPQGYYGYTF 1 4870 NP140-148 FLU 0.57 102 NP140-148 118 4752 2 InfluenzaA NP HSNLNDATY Naive T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*01:01 B2M MHCI -10109 chip0423_716330 -4.47 11.75 Chip2 T1D_6 T1D TGTGCCAGCAGCCCAGGTCTGATGAACACTGAAGCTTTCTTT CASSPGLMNTEAFF TRBV4-2*01 TRBJ1-1*01 57.0 1677.0 _CASSPGLMNTEAFF 1 4317 MART1-ALA MART1 0.43 269 NEG 114 4203 1 HomoSapiens MART1 ALAGIGILTV Naive T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*02:01 B2M MHCI -10110 chip0423_62165 -4.21 11.09 Chip2 T1D_6 T1D TGTGCTGTGAGGGCAAACGACTACAAGCTCAGCTTT CAVRANDYKLSF TRAV8-6*01 TRAJ20*01 25.0 1788.0 TGTGCCAGCAGCCTGAACGGGCAAGAGACCCAGTACTTC CASSLNGQETQYF TRBV7-3*01 TRBJ2-5*01 15.0 748.0 CAVRANDYKLSF_CASSLNGQETQYF 1 4827 M1 FLU 0.71 1250 NEG 119 4708 2 InfluenzaA M1 GILGFVFTL Naive T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*02:01 B2M MHCI -10111 chip0423_497475 16.09 11.88 Chip2 healthy_3 healthy TGTGCCCTAGACAGCATCGGCCGAGGCTCAACCCTGGGGAGGCTATACTTT CALDSIGRGSTLGRLYF TRAV39*01 TRAJ18*01 19.0 1045.0 CALDSIGRGSTLGRLYF_ 1 2072 M1 FLU 0.52 1250 NEG 122 1950 12 InfluenzaA M1 GILGFVFTL effector T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*02:01 B2M MHCI -10112 chip0423_533319 12.45 8.73 Chip2 T1D_6 T1D TGTGCCAGCAGCTTGGGACAGGCCTACGAGCAGTACTTC CASSLGQAYEQYF TRBV7-8*01 TRBJ2-7*01 9.0 545.0 _CASSLGQAYEQYF 175 3000 EBNA3A-193-201 EBV 0.71 1022 EBNA3A-193-201 90 2910 10 EBV EBNA3A FLRGRAYGL effector memory T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-B*08:01 B2M MHCI -10113 chip0423_323884 15.63 9.63 Chip2 T1D_6 T1D TGCGCCAGCAGTCTCCCTCCCTGGGGCTGCCTACAATGAGCAGTTCTTC CASSLPPW??gAAYNEQFF TRBV4-3*01 TRBJ2-1*01 29.0 1632.0 _CASSLPPW??gAAYNEQFF 9 3125 EBNA3A-193-201 EBV 0.71 1022 NEG 99 3026 12 EBV EBNA3A FLRGRAYGL effector T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-B*08:01 B2M MHCI -10114 chip0423_54413 15.45 10.41 Chip2 healthy_3 healthy TGTGCTCGTAGCGGTTCTGGTTCTGCCCGGCCGCTGACCTTT CARSGSGSARPLTF TRAV36/DV7*01 TRAJ22*01 20.0 1418.0 TGTGCCAGTATCGGAAAGACCACTAGCACAGATACGCAGTATTTT CASIGKTTSTDTQYF TRBV19*01 TRBJ2-3*01 41.0 1373.0 CARSGSGSARPLTF_CASIGKTTSTDTQYF 2 4590 NP44-52 FLU 0.75 474 NP44-52 102 4488 12 InfluenzaA NP CTELKLSDY effector T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*01:01 B2M MHCI -10115 chip0423_40305 6.08 12.12 Chip2 healthy_3 healthy TGTGCTACGGACGCATTAAGAGCACTTACTTTT CATDALRALTF TRAV17*01 TRAJ5*01 25.0 2124.0 TGTGCCAGTAGTATAGGGTGGGAGGCTTTCTTT CASSIGWEAFF TRBV19*01 TRBJ1-1*01 18.0 1533.0 CATDALRALTF_CASSIGWEAFF 1 7854 G6PC2-LTS-10 IGRP 0.93 59 G6PC2-LTS-10 107 7747 7 HomoSapiens G6PC2 LTSLTILQLY transitional T cells between effector and memory populations PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*01:01 B2M MHCI -10116 chip0423_818107 -3.04 9.72 Chip2 T1D_6 T1D _ 6746 4966 MART1-A28L MART1 0.57 84 NEG 106 4860 2 HomoSapiens MART1 ALGIGILTV Naive T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*02:01 B2M MHCI -10117 chip0423_763494 -4.91 9.64 Chip2 healthy_3 healthy TGTGCCGTGGGAGCAGGATACAGCACCCTCACCTTT CAVGAGYSTLTF TRAV12-2*01 TRAJ11*01 1.0 102.0 CAVGAGYSTLTF_ 1 5020 MART1-ALA MART1 0.86 269 NEG 95 4925 2 HomoSapiens MART1 ALAGIGILTV Naive T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*02:01 B2M MHCI -10118 chip0423_557481 12.69 10.48 Chip2 healthy_4 healthy _ 6746 4336 BZLF1-190-197 EBV 0.83 2156 NEG 108 4228 9 EBV BZLF1 RAKFKQLL effector memory T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-B*08:01 B2M MHCI -10119 chip0423_125786 12.75 10.65 Chip2 T1D_5 T1D TGTGCAGCAACGGAAACCTCCTACGACAAGGTGATATTT CAATETSYDKVIF TRAV13-1*01 TRAJ50*01 22.0 2107.0 TGTGCCAGCAGTCCCCCGGGGAGAAATGAAAAACTGTTTTTT CASSPPGRNEKLFF TRBV12-3*01,TRBV12-4*01 TRBJ1-4*01 13.0 511.0 CAATETSYDKVIF_CASSPPGRNEKLFF 34 2482 BZLF1-190-197 EBV 0.58 2156 NEG 146 2336 9 EBV BZLF1 RAKFKQLL effector memory T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-B*08:01 B2M MHCI -10120 chip0423_860353 7.86 13.27 Chip2 healthy_3 healthy _ 6746 3890 NP44-52 FLU 0.4 474 NP44-52 100 3790 7 InfluenzaA NP CTELKLSDY transitional T cells between effector and memory populations PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*01:01 B2M MHCI -10121 chip0423_740560 11.15 9.82 Chip2 T1D_5 T1D TGTGCCAGCAGCTTACTGGGGGCAGACACTCATGAGCAGTCCGTT CASSLLGADTHEQSV TRBV11-1*01,TRBV7-9*01 TRBJ2-1*01 2.0 211.0 _CASSLLGADTHEQSV 1 3199 BZLF1-190-197 EBV 0.72 2156 BZLF1-190-197 106 3093 9 EBV BZLF1 RAKFKQLL effector memory T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-B*08:01 B2M MHCI -10122 chip0423_482351 -4.1 8.36 Chip2 healthy_3 healthy TGTGCTGCTCTGGGGTCAGATGGCCAGAAGCTGCTCTTT CAALGSDGQKLLF TRAV1-2*01 TRAJ16*01 15.0 1380.0 TGCGCCAGCAGTCGGGGGCTACCGTCGGGGACTGAAGCTTTCTTT CASSRGLPSGTEAFF TRBV4-1*01 TRBJ1-1*01 21.0 1095.0 CAALGSDGQKLLF_CASSRGLPSGTEAFF 1 5282 MART1-A27L MART1 0.69 16 NEG 103 5179 2 HomoSapiens MART1 ELAGIGILTV Naive T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*02:01 B2M MHCI -10123 chip0423_86783 -2.07 8.86 Chip2 T1D_5 T1D _ 6746 7492 NP140-148 FLU 1.0 102 NP140-148 108 7384 3 InfluenzaA NP HSNLNDATY Naive T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*01:01 B2M MHCI -10124 chip0423_340960 11.3 7.82 Chip2 healthy_4 healthy _ 6746 5412 EBV-LMP2A EBV 0.78 700 NEG 128 5284 10 EBV LMP2A CLGGLLTMV effector memory T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*02:01 B2M MHCI -10125 chip0423_861164 11.55 7.99 Chip2 healthy_4 healthy TGTGCCAGCAGCTCCGGCCCGGCCTACGAGCAGTACTTC CASSSGPAYEQYF TRBV7-8*01 TRBJ2-7*01 8.0 391.0 _CASSSGPAYEQYF 1 2852 EBNA3A-193-201 EBV 0.86 1022 NEG 108 2744 10 EBV EBNA3A FLRGRAYGL effector memory T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-B*08:01 B2M MHCI -10126 chip0423_803986 16.39 11.42 Chip2 healthy_3 healthy TGTGCCAGCAGTGAAATGTGGGGAGCACCCCTCCACTTT CASSEMWGAPLHF TRBV2*01 TRBJ1-6*01 24.0 1183.0 _CASSEMWGAPLHF 14 2302 NP44-52 FLU 0.76 474 NP44-52 107 2195 12 InfluenzaA NP CTELKLSDY effector T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*01:01 B2M MHCI -10127 chip0423_632999 -3.73 13.01 Chip2 T1D_4 T1D TGTGCCGGGTCAGAAGGAGGAAACAAACTGGTCTTT CAGSEGGNKLVF TRAV12-2*01 TRAJ47*01 10.0 665.0 TGTGCCTGGGAAGGGACTAGCGGGGTTTTCGAGCAGTACTTC CAWEGTSGVFEQYF TRBV30*01 TRBJ2-7*01 30.0 1321.0 CAGSEGGNKLVF_CAWEGTSGVFEQYF 1 3796 PGT-178 PGT 0.62 1480 PGT-178 111 3685 1 HomoSapiens PGT LLAGIGTVPI Naive T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*02:01 B2M MHCI -10128 chip0423_103798 -4.13 8.02 Chip2 healthy_4 healthy TGCGCCAGCAGCTTGGGACAGGGTTACGAGCAGTACTTC CASSLGQGYEQYF TRBV5-1*01 TRBJ2-7*01 9.0 615.0 _CASSLGQGYEQYF 1 4290 ADH-79-88 ADH 0.62 15 NEG 109 4181 2 HomoSapiens ADH RQFGPDWIVA Naive T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*02:01 B2M MHCI -10129 chip0423_747259 13.37 8.3 Chip2 T1D_6 T1D TGCATCCTCCCACTTGCTGGTGGTACTAGCTATGGAAAGCTGACATTT CILPLAGGTSYGKLTF TRAV26-2*01 TRAJ52*01 24.0 1105.0 TGTGCCAGCAGCTTGGGACAGGCCTACGAGCAGTACTTC CASSLGQAYEQYF TRBV7-8*01 TRBJ2-7*01 6.0 431.0 CILPLAGGTSYGKLTF_CASSLGQAYEQYF 308 2605 EBNA3A-193-201 EBV 1.0 1022 NEG 135 2470 10 EBV EBNA3A FLRGRAYGL effector memory T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-B*08:01 B2M MHCI -10130 chip0423_249695 6.64 11.32 Chip2 healthy_3 healthy TGTGCTGTTCTCCCCTCTAACGACTACAAGCTCAGCTTT CAVLPSNDYKLSF TRAV21*01,TRAV12-3*01 TRAJ20*01 91.0 4176.0 CAVLPSNDYKLSF_ 2 6604 NP44-52 FLU 0.81 474 NP44-52 101 6503 7 InfluenzaA NP CTELKLSDY transitional T cells between effector and memory populations PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*01:01 B2M MHCI -10131 chip0423_36719 -1.93 8.13 Chip2 healthy_3 healthy TGTGCTGTTGTGCTGGTATTGGAGTCTACTTTCTCACCTTT CAVVLVtt?GVYFLTF TRAV8-3*01 TRAJ39*01 2.0 66.0 TGTGCCAGCAGCGCCAGGGATGACTACGACGAGCAGTACTTC CASSARDDYDEQYF TRBV9*01 TRBJ2-7*01 2.0 28.0 CAVVLVtt?GVYFLTF_CASSARDDYDEQYF 1 6750 ZNT8-VTD-9 ZNT8 0.9 65 ZNT8-VTD-9 116 6634 2 HomoSapiens ZNT8 VTDAAHLLI Naive T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*01:01 B2M MHCI -10132 chip0423_124581 12.13 7.63 Chip2 healthy_4 healthy _ 6746 3102 BZLF1-190-197 EBV 0.71 2156 NEG 111 2991 10 EBV BZLF1 RAKFKQLL effector memory T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-B*08:01 B2M MHCI -10133 chip0423_112491 11.56 10.35 Chip2 T1D_4 T1D TGTGCTGTGTGTGTCTCGCCGTGGGTTGTCATGATCATCTTT CAVCVSPWVVMIIF TRAV3*01 TRAJ30*01 4.0 130.0 TGTGCCAGCAGCTTAGGAGGGGGAGAGGGGGCCAGTGAGCAGTTCTTC CASSLGGGEGASEQFF TRBV7-6*01 TRBJ2-1*01 48.0 2760.0 CAVCVSPWVVMIIF_CASSLGGGEGASEQFF 1 3047 EBNA3A-193-201 EBV 0.8 1022 NEG 121 2926 9 EBV EBNA3A FLRGRAYGL effector memory T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-B*08:01 B2M MHCI -10134 chip0423_107242 6.52 13.99 Chip2 T1D_6 T1D TGTGCTGTGAGTGATCTGGGGAGGGATGACAAGATCATCTTT CAVSDLGRDDKIIF TRAV8-4*01 TRAJ30*01 2.0 34.0 TGTGCCAGCAGGATGGGAGGGAACACTGAAGCTTTCTTT CASRMGGNTEAFF TRBV6-1*01 TRBJ1-1*01 8.0 278.0 CAVSDLGRDDKIIF_CASRMGGNTEAFF 1 3114 M1 FLU 0.57 1250 NEG 118 2996 7 InfluenzaA M1 GILGFVFTL transitional T cells between effector and memory populations PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*02:01 B2M MHCI -10135 chip0423_105246 11.56 12.98 Chip2 healthy_3 healthy TGTGCTGTTCTCCCCTCTAACGACTACAAGCTCAGCTTT CAVLPSNDYKLSF TRAV21*01 TRAJ20*01 11.0 855.0 TGTGCCAGTATCGGAAAGACCACTAGCACAGATACGCAGTATTTT CASIGKTTSTDTQYF TRBV19*01 TRBJ2-3*01 1.0 18.0 CAVLPSNDYKLSF_CASIGKTTSTDTQYF 3 2920 NP44-52 FLU 0.83 474 NP44-52 108 2812 11 InfluenzaA NP CTELKLSDY effector T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*01:01 B2M MHCI -10136 chip0423_93332 9.57 10.34 Chip2 healthy_3 healthy _ 6746 5275 PGT-178 PGT 0.82 1480 PGT-178 94 5181 9 HomoSapiens PGT LLAGIGTVPI effector memory T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*02:01 B2M MHCI -10137 chip0423_76088 6.64 12.13 Chip2 healthy_3 healthy TGTGTGGTGAACGGGGAAAATGCCAGACTCATGTTT CVVNGENARLMF TRAV12-1*01 TRAJ31*01 21.0 2018.0 TGTGCCAGCAGTGAAATGTGGGGAGCACCCCTCCACTTT CASSEMWGAPLHF TRBV2*01 TRBJ1-6*01 22.0 1194.0 CVVNGENARLMF_CASSEMWGAPLHF 12 5858 NP44-52 FLU 0.91 474 NP44-52 96 5762 7 InfluenzaA NP CTELKLSDY transitional T cells between effector and memory populations PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*01:01 B2M MHCI -10138 chip0423_845054 -3.06 10.75 Chip2 T1D_6 T1D _ 6746 5985 ZNT8-165-173 ZNT8 0.96 11 ZNT8-165-173 92 5893 3 HomoSapiens ZNT8 RLLYPDYQI Naive T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*02:01 B2M MHCI -10139 chip0423_687769 12.61 7.33 Chip2 T1D_5 T1D TGTGCAGCTCTCGAAACCTCCTACGACAAGGTGATATTT CAALETSYDKVIF TRAV13-1*01 TRAJ50*01 26.0 2078.0 TGTGCCAGCAGTCCCGACGGATCCACCGGGGAGCTGTTTTTT CASSPDGSTGELFF TRBV12-3*01,TRBV12-4*01 TRBJ2-2*01 59.0 3073.0 CAALETSYDKVIF_CASSPDGSTGELFF 14 3145 BZLF1-190-197 EBV 0.62 2156 NEG 125 3020 10 EBV BZLF1 RAKFKQLL effector memory T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-B*08:01 B2M MHCI -10140 chip0423_402086 -1.67 10.5 Chip2 healthy_3 healthy _ 6746 5067 PGT-178 PGT 0.73 1480 PGT-178 106 4961 3 HomoSapiens PGT LLAGIGTVPI Naive T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*02:01 B2M MHCI -10141 chip0423_284068 14.55 9.83 Chip2 T1D_4 T1D CGTGCTGTGCGTGGTGGAGCCGGCGCCCCGCCGCTGGCATTT RAVRGGAGAPPLAF TRAV8-6*01 TRAJ54*01 54.0 2319.0 TGTGCCAGCAGCTTTGCGGTTCTGGCCGGTCCAGACACTGAAGCTTTCTTT CASSFAVLAGPDTEAFF TRBV7-3*01 TRBJ1-1*01 2.0 71.0 RAVRGGAGAPPLAF_CASSFAVLAGPDTEAFF 1 3031 BZLF1-190-197 EBV 0.89 2156 BZLF1-190-197 114 2917 12 EBV BZLF1 RAKFKQLL effector T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-B*08:01 B2M MHCI -10142 chip0423_556104 -1.06 10.22 Chip2 healthy_4 healthy TGTGCCAGCAGTTTCTTGGAGAACACCGGGGAGCTGTTTTTT CASSFLENTGELFF TRBV12-3*01,TRBV12-4*01 TRBJ2-2*01 9.0 311.0 _CASSFLENTGELFF 1 6056 EBV-LMP2A EBV 0.8 700 NEG 99 5957 3 EBV LMP2A CLGGLLTMV Naive T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*02:01 B2M MHCI -10143 chip0423_379141 -2.54 10.03 Chip2 T1D_5 T1D _ 6746 5679 G6PC2-YLK-8 IGRP 0.48 27 NEG 115 5564 3 HomoSapiens G6PC2 YLKTNLFL Naive T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-B*08:01 B2M MHCI -10144 chip0423_736509 8.15 10.85 Chip2 healthy_3 healthy TGTGCCAGCAGCCAATTGGGGAGTCCGAACACTGAAGCTTTCTTT CASSQLGSPNTEAFF TRBV3-1*01 TRBJ1-1*01 14.0 687.0 _CASSQLGSPNTEAFF 1 7667 NP44-52 FLU 0.67 474 NEG 122 7545 7 InfluenzaA NP CTELKLSDY transitional T cells between effector and memory populations PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*01:01 B2M MHCI -10145 chip0423_756540 -3.64 13.52 Chip2 T1D_6 T1D TGCGCCAGCAGCCAAGAAGGAGGGTTAAACTATGGCTACACCTTC CASSQEGGLNYGYTF TRBV4-1*01 TRBJ1-2*01 18.0 902.0 _CASSQEGGLNYGYTF 1 3160 LMP2A-CPL EBV 0.92 44 LMP2A-CPL 101 3059 1 EBV LMP2A CPLSKILL Naive T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-B*08:01 B2M MHCI -10146 chip0423_745697 -3.31 11.65 Chip2 T1D_6 T1D TGTGCTGGGCGCCCCTGAGCTAATGCTGGTGGTACTAGCTATGGAAAGCTGACATTT CAGRP*ANAGGTSYGKLTF TRAV35*01 TRAJ52*01 45.0 1968.0 CAGRP*ANAGGTSYGKLTF_ 1 4347 ZNT8-VTD-9 ZNT8 0.67 65 NEG 116 4231 1 HomoSapiens ZNT8 VTDAAHLLI Naive T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*01:01 B2M MHCI -10147 chip0423_731327 11.03 8.15 Chip2 healthy_4 healthy TGTGCTGTGGCGGATCAAGGGCGATCTTATTACTCCGCCTCGCGCTTCTTT CAVADQGRSYYSASRFF TRAV2*01 TRAJ34*01 22.0 677.0 TGTGCCAGCAGCTTAAACGTCGGGGAGGGCGCAGGAAACACCATATATTTT CASSLNVGEGAGNTIYF TRBV7-6*01 TRBJ1-3*01 18.0 493.0 CAVADQGRSYYSASRFF_CASSLNVGEGAGNTIYF 1 6735 BZLF1-190-197 EBV 0.86 2156 NEG 125 6610 10 EBV BZLF1 RAKFKQLL effector memory T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-B*08:01 B2M MHCI -10148 chip0423_413494 14.05 13.44 Chip2 T1D_5 T1D TGTGCTGTGGTGCCTTCTGGGGGTTACCAGAAAGTTACCTTT CAVVPSGGYQKVTF TRAV8-3*01 TRAJ13*01 44.0 2336.0 CAVVPSGGYQKVTF_ 1 1645 BZLF1-190-197 EBV 0.47 2156 NEG 91 1554 12 EBV BZLF1 RAKFKQLL effector T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-B*08:01 B2M MHCI -10149 chip0423_403400 -0.67 7.26 Chip2 T1D_5 T1D TGTGCTTATAGGAGCCCGAATTATGGAGGAAGCCAAGGAAATCTCATCTTT CAYRSPNYGGSQGNLIF TRAV38-2/DV8*01 TRAJ42*01 78.0 2432.0 TGTGCCATCAGGGGACAGGATCCTTACGAGCAGTACTTC CAIRGQDPYEQYF TRBV10-3*01 TRBJ2-7*01 17.0 791.0 CAYRSPNYGGSQGNLIF_CAIRGQDPYEQYF 1 6957 NP140-148 FLU 0.46 102 NEG 129 6828 3 InfluenzaA NP HSNLNDATY Naive T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*01:01 B2M MHCI -10150 chip0423_622948 -2.62 10.72 Chip2 healthy_4 healthy _ 6746 5493 gp160-586-593 HIV 0.86 30 NEG 88 5405 3 HIV-1 gp160 YLKDQQLL Naive T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-B*08:01 B2M MHCI -10151 chip0423_442260 15.62 9.86 Chip2 T1D_4 T1D TGTGCCAGCAGCTTAGCGGTCGGAGAAGGGCCCCAGCATTTT CASSLAVGEGPQHF TRBV7-9*01 TRBJ1-5*01 14.0 410.0 _CASSLAVGEGPQHF 113 3064 BZLF1-190-197 EBV 0.71 2156 BZLF1-190-197 120 2944 12 EBV BZLF1 RAKFKQLL effector T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-B*08:01 B2M MHCI -10152 chip0423_825787 0.22 8.86 Chip2 T1D_4 T1D TGTGCAGGAGAAGAGGATATGGAGGAAGCCAAGGAAATCTCATCTTT CAGEEDMga?GSQGNLIF TRAV27*01 TRAJ42*01 42.0 892.0 TGCAGTGCTCTCCGGGACAGGGACAACACCGGGGAGCTGTTTTTT CSALRDRDNTGELFF TRBV20-1*01 TRBJ2-2*01 12.0 614.0 CAGEEDMga?GSQGNLIF_CSALRDRDNTGELFF 1 4834 ZNT8-153-161 ZNT8 0.59 41 NEG 110 4724 4 HomoSapiens ZNT8 VVTGVLVYL Naive T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*02:01 B2M MHCI -10153 chip0423_760272 10.79 11.17 Chip2 healthy_3 healthy TGTGCCAGCAGCCAGATGTCCGATACGCAGTATTTT CASSQMSDTQYF TRBV6-2*01,TRBV6-3*01 TRBJ2-3*01 5.0 154.0 _CASSQMSDTQYF 6 3808 EBV-BRLF1 EBV 0.5 1264 NEG 104 3704 9 EBV BRLF1 YVLDHLIVV effector memory T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*02:01 B2M MHCI -10154 chip0423_423396 -0.42 8.87 Chip2 T1D_6 T1D TGTGCCGTGAACGCGGTGGATAGCAGCTATAAATTGATCTTC CAVNAVDSSYKLIF TRAV12-2*01 TRAJ12*01 38.0 2082.0 TGTGCCAGCAGTTTATCGGCCAACGGGAATCAGCCCCAGCATTTT CASSLSANGNQPQHF TRBV27*01 TRBJ1-5*01 44.0 2087.0 CAVNAVDSSYKLIF_CASSLSANGNQPQHF 1 8914 EBV-LMP2A EBV 0.58 700 EBV-LMP2A 80 8834 4 EBV LMP2A CLGGLLTMV Naive T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*02:01 B2M MHCI -10155 chip0423_407816 -4.23 10.46 Chip2 T1D_4 T1D TGTGCAATGAGTTTATCTAACTTTGGAAATGAGAAATTAACCTTT CAMSLSNFGNEKLTF TRAV12-3*01 TRAJ48*01 22.0 380.0 TGTGCCAGCAGCTTCGGGGGCCCCAATCAGCCCCAGCATTTT CASSFGGPNQPQHF TRBV5-6*01 TRBJ1-5*01 12.0 427.0 CAMSLSNFGNEKLTF_CASSFGGPNQPQHF 1 4991 PGT-178 PGT 0.77 1480 NEG 96 4895 2 HomoSapiens PGT LLAGIGTVPI Naive T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*02:01 B2M MHCI -10156 chip0423_779259 8.36 11.33 Chip2 healthy_4 healthy TGCATCCTTCCCCTAGCTGGTGGTACTAGCTATAGAAAGCTGACATTT CILPLAGGTSYRKLTF TRAV26-2*01 TRAJ52*01 15.0 711.0 TGTGCCAGCAGCTCCGGACAGGCCTACGAGCAGTACTTC CASSSGQAYEQYF TRBV7-8*01 TRBJ2-7*01 11.0 811.0 CILPLAGGTSYRKLTF_CASSSGQAYEQYF 1 4685 EBNA3A-193-201 EBV 0.74 1022 NEG 109 4576 7 EBV EBNA3A FLRGRAYGL transitional T cells between effector and memory populations PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-B*08:01 B2M MHCI -10157 chip0423_732031 5.92 12.76 Chip2 T1D_4 T1D TGTGCTTATATGGGTAATGCTGATGGTACTAGCTATGGAACGCTGACATTT CAYMGNADGTSYGTLTF TRAV38-2/DV8*01 TRAJ52*01 39.0 1324.0 TGTGCCAGCTCGACAGGGTACTATGGCTACACCTTC CASSTGYYGYTF TRBV19*01 TRBJ1-2*01 12.0 571.0 CAYMGNADGTSYGTLTF_CASSTGYYGYTF 1 5791 M1 FLU 0.6 1250 NEG 105 5686 7 InfluenzaA M1 GILGFVFTL transitional T cells between effector and memory populations PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*02:01 B2M MHCI -10158 chip0423_14228 10.47 9.04 Chip2 healthy_4 healthy TGCATCCTTCCCCTAGCTGGTGGTACTCGCTATGGCAAGCTGACATTT CILPLAGGTRYGKLTF TRAV26-2*01 TRAJ52*01 20.0 853.0 TGTGCCAGCAGCTCCGGACAGGCCTACGAGCAGTACTTC CASSSGQAYEQYF TRBV7-8*01 TRBJ2-7*01 22.0 1532.0 CILPLAGGTRYGKLTF_CASSSGQAYEQYF 2 3558 EBNA3A-193-201 EBV 1.0 1022 NEG 113 3445 10 EBV EBNA3A FLRGRAYGL effector memory T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-B*08:01 B2M MHCI -10159 chip0423_796215 7.16 12.73 Chip2 healthy_3 healthy TGTGCCAGTAGCGATCTTAGACAGACAAGCTCCTACAATGAGCAGTTCTTC CASSDLRQTSSYNEQFF TRBV19*01 TRBJ2-1*01 17.0 786.0 _CASSDLRQTSSYNEQFF 3 4878 NP44-52 FLU 0.58 474 NP44-52 99 4779 7 InfluenzaA NP CTELKLSDY transitional T cells between effector and memory populations PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*01:01 B2M MHCI -10160 chip0423_781063 9.7 10.1 Chip2 healthy_4 healthy _ 6746 3927 EBV-BRLF1 EBV 1.0 1264 EBV-BRLF1 100 3827 9 EBV BRLF1 YVLDHLIVV effector memory T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*02:01 B2M MHCI -10161 chip0423_454623 5.94 10.72 Chip2 healthy_3 healthy TGCATCCTGGTCTGGTTCTGCCAGGCAACTGACCTTT CILVWF??tARQLTF TRAV26-2*01 TRAJ22*01 14.0 1314.0 CILVWF??tARQLTF_ 2 8901 NP44-52 FLU 0.66 474 NP44-52 101 8800 6 InfluenzaA NP CTELKLSDY central memory T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*01:01 B2M MHCI -10162 chip0423_628439 -2.08 7.93 Chip2 T1D_6 T1D _ 6746 7508 INS-MAL-8 INS 0.58 38 NEG 92 7416 3 HomoSapiens INS MALWMRLL Naive T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-B*08:01 B2M MHCI -10163 chip0423_526376 4.9 11.64 Chip2 healthy_4 healthy TGTGCCAGCAGTGAATTAGGGGATACGCAGTATTTT CASSELGDTQYF TRBV25-1*01 TRBJ2-3*01 12.0 466.0 _CASSELGDTQYF 15 5245 M1 FLU 1.0 1250 NEG 106 5139 6 InfluenzaA M1 GILGFVFTL central memory T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*02:01 B2M MHCI -10164 chip0423_417606 7.79 13.81 Chip2 healthy_3 healthy TGTGTGGTGAACGGGGAAAATGCCAGACTCATGTTT CVVNGENARLMF TRAV12-1*01 TRAJ31*01 2.0 140.0 CVVNGENARLMF_ 5 3890 NP44-52 FLU 0.83 474 NP44-52 92 3798 7 InfluenzaA NP CTELKLSDY transitional T cells between effector and memory populations PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*01:01 B2M MHCI -10165 chip0423_804251 6.06 13.93 Chip2 healthy_3 healthy TGTGCAGGGAATTATGGAGGAAGCCAAGGAAATCTCATCTTT CAGNYGGSQGNLIF TRAV25*01 TRAJ42*01 29.0 1597.0 CAGNYGGSQGNLIF_ 2 5468 M1 FLU 0.67 1250 NEG 101 5367 7 InfluenzaA M1 GILGFVFTL transitional T cells between effector and memory populations PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*02:01 B2M MHCI -10166 chip0423_630271 11.89 12.69 Chip2 healthy_4 healthy TGTGCCGTGAAGGACACCGACAAGCTCATCTTT CAVKDTDKLIF TRAV8-1*01 TRAJ34*01 19.0 2032.0 TGTGCCAGCAGCTTGCCTAGCGGGGGGGGCCCGGAGCAGTACTTC CASSLPSGGGPEQYF TRBV5-4*01 TRBJ2-7*01 2.0 41.0 CAVKDTDKLIF_CASSLPSGGGPEQYF 1 1708 EBV-BRLF1 EBV 0.85 1264 NEG 123 1585 11 EBV BRLF1 YVLDHLIVV effector T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*02:01 B2M MHCI -10167 chip0423_391227 12.64 13.64 Chip2 T1D_6 T1D TGTGCCAGCAGCCAAGTTCGCGGCGGGTACGAGCAGTACTTC CASSQVRGGYEQYF TRBV3-1*01 TRBJ2-7*01 42.0 2611.0 _CASSQVRGGYEQYF 1 1524 BZLF1-190-197 EBV 0.71 2156 NEG 110 1414 11 EBV BZLF1 RAKFKQLL effector T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-B*08:01 B2M MHCI -10168 chip0423_146303 9.57 11.75 Chip2 T1D_5 T1D TGTGCCAGCAGCCCTCTTGGGAGCAATGAAAAACTGTTTTTT CASSPLGSNEKLFF TRBV7-9*01 TRBJ1-4*01 1.0 28.0 _CASSPLGSNEKLFF 20 3795 BZLF1-190-197 EBV 1.0 2156 NEG 95 3700 7 EBV BZLF1 RAKFKQLL transitional T cells between effector and memory populations PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-B*08:01 B2M MHCI -10169 chip0423_32937 -2.69 14.5 Chip2 T1D_6 T1D TGTGCCAGCAGCGTAGCTCCGGGACAGGGTCCGTTCTTC CASSVAPGQGPFF TRBV9*01 TRBJ2-1*01 6.0 293.0 _CASSVAPGQGPFF 1 2940 PGT-178 PGT 0.41 1480 NEG 98 2842 1 HomoSapiens PGT LLAGIGTVPI Naive T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*02:01 B2M MHCI -10170 chip0423_729660 5.88 13.72 Chip2 healthy_3 healthy TGCAGCGTCATAGTTGCCAGGGGGGGTAGCTTCTCTTC CSVIVAa?gGG*LLF TRAV26-1*01 TRAJ23*01 8.0 402.0 TGCAGCGCCGGCAGGGACGGGACTAATGAAAAACTGTTTTTT CSAGRDGTNEKLFF TRBV29-1*01 TRBJ1-4*01 4.0 105.0 CSVIVAa?gGG*LLF_CSAGRDGTNEKLFF 1 6536 NP44-52 FLU 0.63 474 NP44-52 91 6445 7 InfluenzaA NP CTELKLSDY transitional T cells between effector and memory populations PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*01:01 B2M MHCI -10171 chip0423_874494 16.01 11.22 Chip2 T1D_5 T1D TGTGCCAGCAGCTTATTGGGATCGGTGGACACTGAAGCTTTCTTT CASSLLGSVDTEAFF TRBV7-9*01 TRBJ1-1*01 29.0 840.0 _CASSLLGSVDTEAFF 3 2505 BZLF1-190-197 EBV 0.44 2156 NEG 125 2380 12 EBV BZLF1 RAKFKQLL effector T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-B*08:01 B2M MHCI -10172 chip0423_784816 9.85 8.37 Chip2 T1D_5 T1D TGTGCAGCAAGTGAGGAGAAATTAACCTTT CAASEEKLTF TRAV13-1*01 TRAJ48*01 24.0 2001.0 CAASEEKLTF_ 1 3877 BZLF1-190-197 EBV 0.5 2156 NEG 109 3768 8 EBV BZLF1 RAKFKQLL effector memory T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-B*08:01 B2M MHCI -10173 chip0423_809315 11.65 13.39 Chip2 T1D_4 T1D _ 6746 1979 BZLF1-190-197 EBV 0.75 2156 NEG 95 1884 11 EBV BZLF1 RAKFKQLL effector T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-B*08:01 B2M MHCI -10174 chip0423_706720 -4.35 10.05 Chip2 healthy_3 healthy TGTGCAGCAAGCGCGGATAGCGACTATCAGTTAATCTGG CAASADSDYQLIW TRAV29/DV5*01 TRAJ33*01 55.0 2994.0 TGTGCCAGCAGCTTAGCGGGGGTTGTGGGGGGCTATGGCTACACCTTC CASSLAGVVGGYGYTF TRBV7-8*01 TRBJ1-2*01 5.0 293.0 CAASADSDYQLIW_CASSLAGVVGGYGYTF 1 6033 INS-6-16 INS 0.4 20 NEG 108 5925 2 HomoSapiens INS RLLPLLALLAL Naive T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*02:01 B2M MHCI -10175 chip0423_341948 0.77 8.77 Chip2 healthy_3 healthy TGTGCCGTGAACCCAACCTCCTACGACAAGGTGATATTT CAVNPTSYDKVIF TRAV12-2*01 TRAJ50*01 20.0 1363.0 TGTGCCAACAGCGTTTCCCCCGACAATGAGCAGTTGTTC CANSVSPDNEQLF TRBV9*01 TRBJ2-1*01 3.0 344.0 CAVNPTSYDKVIF_CANSVSPDNEQLF 1 4724 PGT-178 PGT 0.71 1480 NEG 97 4627 4 HomoSapiens PGT LLAGIGTVPI Naive T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*02:01 B2M MHCI -10176 chip0423_339837 11.76 13.13 Chip2 T1D_4 T1D TGTGCCAGCAGCTTAGCGGTCGGAGAAGGGCCCCAGCATTTT CASSLAVGEGPQHF TRBV7-9*01 TRBJ1-5*01 24.0 838.0 _CASSLAVGEGPQHF 113 2393 BZLF1-190-197 EBV 0.82 2156 NEG 106 2287 11 EBV BZLF1 RAKFKQLL effector T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-B*08:01 B2M MHCI -10177 chip0423_117823 12.21 12.91 Chip2 healthy_4 healthy TGTGCAGAGGGGGTTCTGCAAGGCAACTGACCTTT CAEGVct?ARQLTF TRAV13-2*01 TRAJ22*01 1.0 18.0 CAEGVct?ARQLTF_ 1 2105 BZLF1-190-197 EBV 1.0 2156 NEG 100 2005 11 EBV BZLF1 RAKFKQLL effector T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-B*08:01 B2M MHCI -10178 chip0423_306678 -2.85 9.78 Chip2 healthy_5 healthy TGTGCAGAGCATTCCTACACCGGTAACCGGTTCTATTTT CAEHSYTGNRFYF TRAV13-2*01 TRAJ49*01 2.0 84.0 TGTGCCAGCAGCCCCCACCGTGAGCAGTTCTTC CASSPHREQFF TRBV9*01 TRBJ2-1*01 8.0 1314.0 CAEHSYTGNRFYF_CASSPHREQFF 1 4638 GAD2-QQD-10 GAD65 0.81 7 GAD2-QQD-10 84 4554 2 HomoSapiens GAD2 QQDKHYDLSY Naive T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*01:01 B2M MHCI -10179 chip0423_779242 13.79 11.4 Chip2 T1D_6 T1D TGCAGCGCCGGCAGGGACGGGACTAATGAAAAACTGTTTTTT CSAGRDGTNEKLFF TRBV29-1*01 TRBJ1-4*01 88.0 5414.0 _CSAGRDGTNEKLFF 159 3263 EBV-BLMF1 EBV 0.78 2531 NEG 124 3139 12 EBV BLMF1 GLCTLVAML effector T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*02:01 B2M MHCI -10180 chip0423_133931 7.56 13.68 Chip2 healthy_4 healthy _ 6746 2118 M1 FLU 1.0 1250 NEG 91 2027 6 InfluenzaA M1 GILGFVFTL central memory T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*02:01 B2M MHCI -10181 chip0423_356526 4.96 12.06 Chip2 healthy_4 healthy _ 6746 3652 M1 FLU 0.86 1250 NEG 96 3556 6 InfluenzaA M1 GILGFVFTL central memory T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*02:01 B2M MHCI -10182 chip0423_246764 10.56 11.47 Chip2 healthy_3 healthy TGTGCCGTGAAGGAGGGAGGAAAGCTTATCTTC CAVKEGGKLIF TRAV8-1*01 TRAJ23*01 16.0 1748.0 TGTGCCAGCAGCCAGATGTCAGATACGCAGTATTTT CASSQMSDTQYF TRBV6-2*01,TRBV6-3*01 TRBJ2-3*01 11.0 554.0 CAVKEGGKLIF_CASSQMSDTQYF 3 3869 EBV-BRLF1 EBV 0.81 1264 EBV-BRLF1 96 3773 9 EBV BRLF1 YVLDHLIVV effector memory T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*02:01 B2M MHCI -10183 chip0423_110357 -3.34 13.46 Chip2 T1D_6 T1D _ 6746 3379 CVB3-P3A CVB 0.5 77 NEG 129 3250 1 CoxsackievirusB P3A GIIYIIYKL Naive T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*02:01 B2M MHCI -10184 chip0423_635593 11.33 12.63 Chip2 healthy_4 healthy TATGGAGCAGACAATGCCTCAGGACCCTACCCATCCTTCTTT YGADNASGPYPSFF TRAV34*01 TRAJ40*01 11.0 435.0 TGCAGCGCCGGATCAGGTGAAGGCTACGAGCAGTACTTC CSAGSGEGYEQYF TRBV29-1*01 TRBJ2-7*01 39.0 3028.0 YGADNASGPYPSFF_CSAGSGEGYEQYF 1 2694 BZLF1-190-197 EBV 0.8 2156 NEG 105 2589 11 EBV BZLF1 RAKFKQLL effector T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-B*08:01 B2M MHCI -10185 chip0423_351954 -1.7 11.84 Chip2 T1D_4 T1D TGTGCCAGCAGTGACAGGACTAGCGTATCCTACAATGAGCAGTTCTTC CASSDRTSVSYNEQFF TRBV6-4*01 TRBJ2-1*01 13.0 428.0 _CASSDRTSVSYNEQFF 1 4578 G6PC2-LTS-10 IGRP 0.85 59 G6PC2-LTS-10 101 4477 3 HomoSapiens G6PC2 LTSLTILQLY Naive T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*01:01 B2M MHCI -10186 chip0423_168514 7.0 10.9 Chip2 healthy_3 healthy TGTGCAGAGACGGGATCTAACCAGGCAGGAACTGCTCTGATCTTT CAETGSNQAGTALIF TRAV13-2*01 TRAJ15*01 92.0 4011.0 TGCGCCAGCAGCCAAGATGGGTACGGGGGGGATCAGCCCCAGCATTTT CASSQDGYGGDQPQHF TRBV4-1*01 TRBJ1-5*01 17.0 481.0 CAETGSNQAGTALIF_CASSQDGYGGDQPQHF 3 7688 NP44-52 FLU 0.81 474 NP44-52 103 7585 7 InfluenzaA NP CTELKLSDY transitional T cells between effector and memory populations PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*01:01 B2M MHCI -10187 chip0423_540715 8.53 11.44 Chip2 healthy_3 healthy _ 6746 6074 NP44-52 FLU 0.83 474 NP44-52 106 5968 7 InfluenzaA NP CTELKLSDY transitional T cells between effector and memory populations PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*01:01 B2M MHCI -10188 chip0423_276027 9.01 7.76 Chip2 T1D_4 T1D TGTGCCAGCAGCTTAGCGGTCGGGGAAGGGCCCCAGCATTTT CASSLAVGEGPQHF TRBV7-9*01 TRBJ1-5*01 3.0 45.0 _CASSLAVGEGPQHF 113 6294 BZLF1-190-197 EBV 0.78 2156 BZLF1-190-197 108 6186 8 EBV BZLF1 RAKFKQLL effector memory T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-B*08:01 B2M MHCI -10189 chip0423_854317 -2.33 9.28 Chip2 T1D_5 T1D TGTGCCGCAGGGGGTTACCAGAAAGTTACCTTT CAAGGYQKVTF TRAV12-1*01 TRAJ13*01 4.0 486.0 CAAGGYQKVTF_ 1 6797 ZNT8-YAY-8 ZNT8 0.69 54 ZNT8-YAY-8 121 6676 3 HomoSapiens ZNT8 YAYAKWKL Naive T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-B*08:01 B2M MHCI -10190 chip0423_782454 11.84 10.18 Chip2 T1D_6 T1D TGTGCCAGCAGCTTGGGACAGGCCTACGAGCAGTACTTC CASSLGQAYEQYF TRBV7-8*01 TRBJ2-7*01 12.0 483.0 _CASSLGQAYEQYF 175 3924 EBNA3A-193-201 EBV 0.67 1022 NEG 108 3816 9 EBV EBNA3A FLRGRAYGL effector memory T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-B*08:01 B2M MHCI -10191 chip0423_712828 10.84 7.53 Chip2 T1D_4 T1D TGTGCTACTGTGGGCTGTTCGGGATACAGCACCCTCACCTTT CATVGCSGYSTLTF TRAV17*01 TRAJ11*01 46.0 1979.0 CATVGCSGYSTLTF_ 1 5329 EBV-LMP2-FLY EBV 0.5 355 NEG 100 5229 6 EBV LMP2 FLYALALLL central memory T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*02:01 B2M MHCI -10192 chip0423_35260 -1.03 8.77 Chip2 healthy_3 healthy TGTGCCAGCAGTTCTTAAACCCGGGACAGCAACTAATGAAAAACTGTTTTTT CASSS*TRga??caATNEKLFF TRBV27*01 TRBJ1-4*01 34.0 916.0 _CASSS*TRga??caATNEKLFF 1 9166 PGT-178 PGT 0.82 1480 PGT-178 110 9056 3 HomoSapiens PGT LLAGIGTVPI Naive T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*02:01 B2M MHCI -10193 chip0423_226126 -3.55 9.66 Chip2 T1D_6 T1D TGTGCCAGCAGCCAATCCGACAGGGGTAGTGGCTACACCTTC CASSQSDRGSGYTF TRBV14*01 TRBJ1-2*01 6.0 86.0 _CASSQSDRGSGYTF 1 5771 PGT-178 PGT 0.57 1480 NEG 87 5684 2 HomoSapiens PGT LLAGIGTVPI Naive T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*02:01 B2M MHCI -10194 chip0423_606199 -1.37 7.1 Chip2 healthy_3 healthy TGTGCAATGAGCGGGGGTAACTTTGGAAATGAGAAATTAACCTTT CAMSGGNFGNEKLTF TRAV12-3*01 TRAJ48*01 71.0 2577.0 TGTGCCAGCAGTTACTCACTAGCGGAAGTCTCTATAGATACGCAGTATTCT CASSYSLAEVSIDTQYS TRBV6-5*01 TRBJ2-3*01 41.0 1435.0 CAMSGGNFGNEKLTF_CASSYSLAEVSIDTQYS 1 7409 PGT-178 PGT 0.52 1480 NEG 118 7291 3 HomoSapiens PGT LLAGIGTVPI Naive T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*02:01 B2M MHCI -10195 chip0423_675765 11.3 10.13 Chip2 healthy_4 healthy _ 6746 3674 EBNA3A-193-201 EBV 0.67 1022 NEG 100 3574 9 EBV EBNA3A FLRGRAYGL effector memory T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-B*08:01 B2M MHCI -10196 chip0423_646502 -0.74 10.4 Chip2 healthy_5 healthy _ 6746 6357 NP44-52 FLU 0.57 474 NEG 93 6264 3 InfluenzaA NP CTELKLSDY Naive T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*01:01 B2M MHCI -10197 chip0423_96702 10.26 11.51 Chip2 T1D_5 T1D TGTGCCAGCAGCCCGGGACAGGATGGCTACACCTTC CASSPGQDGYTF TRBV7-9*01 TRBJ1-2*01 1.0 49.0 _CASSPGQDGYTF 1 3819 BZLF1-190-197 EBV 0.56 2156 NEG 121 3698 9 EBV BZLF1 RAKFKQLL effector memory T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-B*08:01 B2M MHCI -10198 chip0423_691694 11.28 7.51 Chip2 T1D_5 T1D TGTGCCAGCAGTTCACTAGACAGGGGGCCGAACACCGGGGAGCTGTTTTTT CASSSLDRGPNTGELFF TRBV12-3*01,TRBV12-4*01 TRBJ2-2*01 1.0 21.0 _CASSSLDRGPNTGELFF 3 5823 BZLF1-190-197 EBV 1.0 2156 NEG 115 5708 10 EBV BZLF1 RAKFKQLL effector memory T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-B*08:01 B2M MHCI -10199 chip0423_668241 -1.85 8.57 Chip2 healthy_4 healthy TGCAGCGTTGAAGAATGGGGGGGGAAGAGCTCTGGGGCCAACGTCCTGACTTTC CSVEEWGGKSSGANVLTF TRBV29-1*01 TRBJ2-6*01 5.0 84.0 _CSVEEWGGKSSGANVLTF 1 6971 ZNT8-173-181 ZNT8 0.56 27 NEG 99 6872 3 HomoSapiens ZNT8 IQATVMIIV Naive T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*02:01 B2M MHCI -10200 chip0423_18387 7.0 13.51 Chip2 T1D_6 T1D TGTGCTGTGAGAGACATCCATACTGGAGGCTTCAAAACTATCTTT CAVRDIHTGGFKTIF TRAV3*01 TRAJ9*01 45.0 2005.0 CAVRDIHTGGFKTIF_ 3 4224 M1 FLU 0.53 1250 NEG 104 4120 7 InfluenzaA M1 GILGFVFTL transitional T cells between effector and memory populations PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*02:01 B2M MHCI -10201 chip0423_800508 10.92 8.52 Chip2 healthy_4 healthy TGTGCCAGCAGCTTAAACGTCGGGGAGGGCGCAGGAAACACCATATATTTT CASSLNVGEGAGNTIYF TRBV7-6*01 TRBJ1-3*01 18.0 470.0 _CASSLNVGEGAGNTIYF 9 5313 BZLF1-190-197 EBV 0.86 2156 NEG 98 5215 10 EBV BZLF1 RAKFKQLL effector memory T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-B*08:01 B2M MHCI -10202 chip0423_802343 5.93 12.52 Chip2 healthy_3 healthy TGTGCAGGAGCTCATGGAAGAAGCCAAGGAAATCTCATCTTT CAGAHGRSQGNLIF TRAV27*01 TRAJ42*01 45.0 1296.0 TGTGCCAGTCGTTCCAGCTCTGCGTCTGAAGCTTTCTGT CASRSSSASEAFC TRBV19*01 TRBJ1-1*01 6.0 496.0 CAGAHGRSQGNLIF_CASRSSSASEAFC 1 5232 M1 FLU 0.85 1250 NEG 97 5135 7 InfluenzaA M1 GILGFVFTL transitional T cells between effector and memory populations PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*02:01 B2M MHCI -10203 chip0423_118129 -4.29 10.02 Chip2 T1D_4 T1D TATGCAGCAAGCGTAAACAATGACATGCGCTTT YAASVNNDMRF TRAV29/DV5*01 TRAJ43*01 24.0 3218.0 TGTGCCAGCAGCTTGAACGGGAGGGCCTATGGCGGGGAGCTGTTTTTT CASSLNGRAYGGELFF TRBV5-5*01 TRBJ2-2*01 38.0 1602.0 YAASVNNDMRF_CASSLNGRAYGGELFF 1 5118 GFAP-LRL-8 GFAP 0.45 18 NEG 96 5022 2 HomoSapiens GFAP LRLRLDQL Naive T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-B*08:01 B2M MHCI -10204 chip0423_544978 6.83 10.4 Chip2 T1D_4 T1D TGTGCCGTCTGGAGGGACGGAGCCTACGAGCAGTACTTC CAVWRDGAYEQYF TRBV28*01 TRBJ2-7*01 7.0 334.0 _CAVWRDGAYEQYF 12 5524 EBV-LMP1-1 EBV 0.6 237 NEG 128 5396 7 EBV LMP1 YLLEMLWRL transitional T cells between effector and memory populations PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*02:01 B2M MHCI -10205 chip0423_659789 12.23 7.27 Chip2 T1D_4 T1D _ 6746 4023 EBNA3A-193-201 EBV 0.71 1022 NEG 114 3909 10 EBV EBNA3A FLRGRAYGL effector memory T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-B*08:01 B2M MHCI -10206 chip0423_347663 5.1 9.74 Chip2 T1D_4 T1D TGTGCCGTGGCCGAGACCTCAAATACTGGAGGCTTCAAAACTATCTTT CAVAETSNTGGFKTIF TRAV12-2*01 TRAJ9*01 1.0 14.0 TGTGCCAGCAGCCTGATGGCGGGGAGCACAGATACGCAGTATTTT CASSLMAGSTDTQYF TRBV27*01 TRBJ2-3*01 28.0 1354.0 CAVAETSNTGGFKTIF_CASSLMAGSTDTQYF 3 4084 EBV-LMP1-2 EBV 0.83 41 NEG 120 3964 6 EBV LMP1 YLQQNWWTL central memory T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*02:01 B2M MHCI -10207 chip0423_236014 9.29 10.99 Chip2 healthy_4 healthy _ 6746 4783 EBV-BRLF1 EBV 0.9 1264 EBV-BRLF1 105 4678 9 EBV BRLF1 YVLDHLIVV effector memory T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*02:01 B2M MHCI -10208 chip0423_772703 14.53 10.02 Chip2 healthy_4 healthy TGTGCTGTGGAGAAGAAGAACACCGACAAGCTCATCTTT CAVEKKNTDKLIF TRAV12-2*01 TRAJ34*01 39.0 2365.0 TGTGCCAGCAGCTTAAACGTCGGGGAGGGCGCAGGAAAACACCATAGATTTT CASSLNVGga??ggAQENTIDF TRBV7-6*01 TRBJ1-3*01 22.0 831.0 CAVEKKNTDKLIF_CASSLNVGga??ggAQENTIDF 1 2665 BZLF1-190-197 EBV 0.46 2156 NEG 117 2548 12 EBV BZLF1 RAKFKQLL effector T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-B*08:01 B2M MHCI -10209 chip0423_88641 0.24 8.5 Chip2 healthy_3 healthy TGTGCCGTGCGGCCCCAGGCCGGCCCTGCTCTGCTCTTT CAVRPQAGPALLF TRAV8-1*01 TRAJ15*01 4.0 246.0 TGTGCCACCAGTGACTTGACAGATACGCAGTATTTT CATSDLTDTQYF TRBV24-1*01 TRBJ2-3*01 12.0 560.0 CAVRPQAGPALLF_CATSDLTDTQYF 1 6120 EBV-BRLF1 EBV 0.44 1264 NEG 121 5999 4 EBV BRLF1 YVLDHLIVV Naive T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*02:01 B2M MHCI -10210 chip0423_788529 11.76 8.11 Chip2 healthy_4 healthy TGTGCCGTGAGGGGCACCGGCACGCTCATCTTT CAVRGTGTLIF TRAV8-1*01 TRAJ34*01 11.0 1912.0 TGTGCCAGCAGTTACTCGGCAGGGTTCACCGGGGAGCTGTTTTTT CASSYSAGFTGELFF TRBV6-5*01 TRBJ2-2*01 41.0 1552.0 CAVRGTGTLIF_CASSYSAGFTGELFF 1 2762 EBV-BRLF1 EBV 0.75 1264 NEG 108 2654 10 EBV BRLF1 YVLDHLIVV effector memory T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*02:01 B2M MHCI -10211 chip0423_715884 -3.72 10.1 Chip2 T1D_6 T1D TGTGCAATATCCATATCTAACTTTGGAAATGAGAAATTAACCTTT CAISISNFGNEKLTF TRAV12-3*01 TRAJ48*01 58.0 1988.0 TGTGCCAGCAGCCGTACGGAGGCGAACACTGAAGCTTTCTTT CASSRTEANTEAFF TRBV28*01 TRBJ1-1*01 25.0 867.0 CAISISNFGNEKLTF_CASSRTEANTEAFF 1 5068 PGT-178 PGT 0.68 1480 PGT-178 100 4968 2 HomoSapiens PGT LLAGIGTVPI Naive T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*02:01 B2M MHCI -10212 chip0423_333412 15.95 10.06 Chip2 T1D_5 T1D TGTGCAGAGCCGGAAACCTACTACGCCAAGGTGATATTA CAEPETYYAKVIL TRAV13-2*01 TRAJ50*01 16.0 1012.0 TGTGCCAGCAGCTTCACTAGCGGGACAGATCCTGAGCTGTTTTTT CASSFTSGTDPELFF TRBV7-9*01 TRBJ2-2*01 18.0 913.0 CAEPETYYAKVIL_CASSFTSGTDPELFF 1 3044 BZLF1-190-197 EBV 0.57 2156 NEG 92 2952 12 EBV BZLF1 RAKFKQLL effector T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-B*08:01 B2M MHCI -10213 chip0423_755598 11.16 8.2 Chip2 T1D_5 T1D TGTGCCAGCAGTCCCGACGGATCCACCGGGGAGCTGTTTTTT CASSPDGSTGELFF TRBV12-3*01,TRBV12-4*01 TRBJ2-2*01 40.0 2098.0 _CASSPDGSTGELFF 10 5026 BZLF1-190-197 EBV 0.7 2156 BZLF1-190-197 101 4925 10 EBV BZLF1 RAKFKQLL effector memory T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-B*08:01 B2M MHCI -10214 chip0423_734320 4.95 11.0 Chip2 healthy_3 healthy TGTGCCAGCAGCCCGAGACTCTTGTCGGGAACCGGGGAGCTGTTTTTT CASSPRLLSGTGELFF TRBV7-9*01 TRBJ2-2*01 1.0 28.0 _CASSPRLLSGTGELFF 4 7231 PGT-178 PGT 0.53 1480 NEG 117 7114 6 HomoSapiens PGT LLAGIGTVPI central memory T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*02:01 B2M MHCI -10215 chip0423_480231 12.48 10.59 Chip2 T1D_4 T1D TGTGCCAGCAGCTTAGCGGTCGGAGAAGGGCCCCAGCATTTT CASSLAVGEGPQHF TRBV7-9*01 TRBJ1-5*01 43.0 1398.0 _CASSLAVGEGPQHF 113 3618 BZLF1-190-197 EBV 0.88 2156 BZLF1-190-197 119 3499 9 EBV BZLF1 RAKFKQLL effector memory T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-B*08:01 B2M MHCI -10216 chip0423_477804 10.29 10.15 Chip2 healthy_3 healthy _ 6746 4035 EBV-BRLF1 EBV 0.48 1264 EBV-BRLF1 104 3931 9 EBV BRLF1 YVLDHLIVV effector memory T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*02:01 B2M MHCI -10217 chip0423_50323 -4.34 11.58 Chip2 T1D_6 T1D TGTGCAATGAGAGAGCCATATAATAATGCAGGCAACATGCTCACCTTT CAMREPYNNAGNMLTF TRAV14/DV4*01 TRAJ39*01 70.0 2231.0 CAMREPYNNAGNMLTF_ 1 5415 NP30-38 FLU 0.67 72 NEG 86 5329 1 InfluenzaA NP RPIIRPATL Naive T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-B*08:01 B2M MHCI -10218 chip0423_849115 15.23 10.91 Chip2 healthy_4 healthy _ 6746 2858 BZLF1-190-197 EBV 0.88 2156 NEG 113 2745 12 EBV BZLF1 RAKFKQLL effector T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-B*08:01 B2M MHCI -10219 chip0423_518913 13.04 8.17 Chip2 T1D_6 T1D TGCATCCTCCCACTTGCTGGTGGTACTAGCTATGGAAAGCTGACATTT CILPLAGGTSYGKLTF TRAV26-2*01 TRAJ52*01 55.0 2376.0 TGTGCCAGCAGCTTGGGACAGGCCTACGAGCAGTACTTC CASSLGQAYEQYF TRBV7-8*01 TRBJ2-7*01 2.0 298.0 CILPLAGGTSYGKLTF_CASSLGQAYEQYF 308 3697 EBNA3A-193-201 EBV 0.83 1022 NEG 96 3601 10 EBV EBNA3A FLRGRAYGL effector memory T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-B*08:01 B2M MHCI -10220 chip0423_47085 -2.74 7.99 Chip2 healthy_3 healthy _ 6746 6988 NP44-52 FLU 0.56 474 NEG 81 6907 2 InfluenzaA NP CTELKLSDY Naive T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*01:01 B2M MHCI -10221 chip0423_708194 13.11 11.4 Chip2 T1D_5 T1D TGTGCAATGAGGGCCATTGAGGGGGCAAACAACCTCTTCTTT CAMRAIEGANNLFF TRAV14/DV4*01 TRAJ36*01 11.0 704.0 TGCGCCAGCAGCCTCAGTTCGGGAGGCCGTGGCGAGCAGTACTTC CASSLSSGGRGEQYF TRBV4-1*01 TRBJ2-7*01 9.0 347.0 CAMRAIEGANNLFF_CASSLSSGGRGEQYF 4 3008 BZLF1-190-197 EBV 0.61 2156 BZLF1-190-197 112 2896 9 EBV BZLF1 RAKFKQLL effector memory T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-B*08:01 B2M MHCI -10222 chip0423_494383 -3.28 10.44 Chip2 healthy_4 healthy _ 6746 4011 PGT-178 PGT 0.82 1480 NEG 91 3920 2 HomoSapiens PGT LLAGIGTVPI Naive T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*02:01 B2M MHCI -10223 chip0423_489143 9.27 11.68 Chip2 T1D_5 T1D TGTGCCAGCCAACTAGCGGGAGGCACCGGGGAGCTGTTTTTT CASQLAGGTGELFF TRBV24-1*01 TRBJ2-2*01 22.0 1308.0 _CASQLAGGTGELFF 69 2423 BZLF1-190-197 EBV 0.67 2156 NEG 126 2297 9 EBV BZLF1 RAKFKQLL effector memory T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-B*08:01 B2M MHCI -10224 chip0423_598448 5.85 11.29 Chip2 T1D_6 T1D _ 6746 11273 EBV-LMP2-FLY EBV 1.0 355 NEG 93 11180 6 EBV LMP2 FLYALALLL central memory T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*02:01 B2M MHCI -10225 chip0423_408167 5.21 10.84 Chip2 healthy_4 healthy TGTGCCAGCAGTTTAGGTCCTAGCGGACAAGAGACCCAGTACTTC CASSLGPSGQETQYF TRBV27*01 TRBJ2-5*01 2.0 54.0 _CASSLGPSGQETQYF 1 4010 M1 FLU 0.9 1250 NEG 125 3885 6 InfluenzaA M1 GILGFVFTL central memory T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*02:01 B2M MHCI -10226 chip0423_357199 5.41 12.33 Chip2 healthy_3 healthy TGTGCTGTGAGTGATCGGAACTTCAACAAATTTTACTTT CAVSDRNFNKFYF TRAV8-4*01 TRAJ21*01 13.0 678.0 CAVSDRNFNKFYF_ 2 4942 NP44-52 FLU 0.73 474 NP44-52 115 4827 6 InfluenzaA NP CTELKLSDY central memory T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*01:01 B2M MHCI -10227 chip0423_99499 6.11 9.31 Chip2 T1D_4 T1D _ 6746 9155 EBV-LMP2-FLY EBV 0.53 355 NEG 118 9037 6 EBV LMP2 FLYALALLL central memory T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*02:01 B2M MHCI -10228 chip0423_860339 -0.66 9.48 Chip2 T1D_5 T1D TGTGCTTGCGCGTCATCTGCGGCCAACAAGCTCACTTTT CACASSAANKLTF TRAV27*01 TRAJ17*01 29.0 1837.0 TGTGCCATCAGTGAGCCGCGGGACTACCTATCCTACAATGAGCAGTTCTTC CAISEPRDYLSYNEQFF TRBV10-3*01 TRBJ2-1*01 40.0 1836.0 CACASSAANKLTF_CAISEPRDYLSYNEQFF 1 8249 G6PC2-LTS-10 IGRP 0.84 59 G6PC2-LTS-10 111 8138 3 HomoSapiens G6PC2 LTSLTILQLY Naive T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*01:01 B2M MHCI -10229 chip0423_747745 -2.44 7.46 Chip2 healthy_3 healthy TGTGCCAGCAGTTTCAGAGGATGGTCCTACGAGCAGTACTTC CASSFRGWSYEQYF TRBV27*01 TRBJ2-7*01 5.0 254.0 _CASSFRGWSYEQYF 1 7547 GAD65-114-122 GAD65 0.41 63 NEG 94 7453 3 HomoSapiens GAD65 VMNILLQYV Naive T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*02:01 B2M MHCI -10230 chip0423_671310 10.95 6.42 Chip2 T1D_5 T1D TGTACCGGGAGCGGATTTGGAAGGGAGAAATTGCCCTTT CTGSGFGREKLPF TRAV12-2*01 TRAJ48*01 4.0 185.0 TGTGCCGTGAATGGGTCTTCGGCTTGTGGTGGTAGCGACTATAAACTGACATTT CAVNGSSACGGSDYKLTF TRAV8-1*01 TRAJ53*01 3.0 67.0 0.38 TGCGCCAGCAGCCACCAGGAGGGGGCCATTCAGCCCCAGCATTTT CASSHQEGAIQPQHF TRBV4-1*01 TRBJ1-5*01 16.0 585.0 CTGSGFGREKLPF_CASSHQEGAIQPQHF 1 7193 BZLF1-190-197 EBV 0.78 2156 NEG 128 7065 10 EBV BZLF1 RAKFKQLL effector memory T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-B*08:01 B2M MHCI -10231 chip0423_661407 -1.03 6.88 Chip2 healthy_3 healthy TGTGCCAGTAGTGCACAGGTGATGAACACTGAAGCTTTCTTT CASSAQVMNTEAFF TRBV19*01 TRBJ1-1*01 63.0 2430.0 _CASSAQVMNTEAFF 1 6430 ZNT8-VTD-9 ZNT8 0.58 65 ZNT8-VTD-9 125 6305 3 HomoSapiens ZNT8 VTDAAHLLI Naive T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*01:01 B2M MHCI -10232 chip0423_341234 12.03 8.83 Chip2 T1D_5 T1D _ 6746 2802 BZLF1-190-197 EBV 0.42 2156 NEG 106 2696 10 EBV BZLF1 RAKFKQLL effector memory T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-B*08:01 B2M MHCI -10233 chip0423_301328 6.62 12.13 Chip2 healthy_3 healthy TGTGCCAGCAGCGAGGCGGACGGGCCCCAGCATTTT CASSEADGPQHF TRBV9*01 TRBJ1-5*01 1.0 51.0 _CASSEADGPQHF 1 4969 NP44-52 FLU 0.56 474 NP44-52 113 4856 7 InfluenzaA NP CTELKLSDY transitional T cells between effector and memory populations PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*01:01 B2M MHCI -10234 chip0423_162384 6.42 14.14 Chip2 healthy_3 healthy _ 6746 4217 NP44-52 FLU 0.52 474 NEG 123 4094 7 InfluenzaA NP CTELKLSDY transitional T cells between effector and memory populations PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*01:01 B2M MHCI -10235 chip0423_716131 6.01 13.79 Chip2 healthy_3 healthy TGTGCTCTGATTTTTTTCTGGTGGCTCCTGTAGGCTGATTTTT CALIFFW??tGSCRLIF TRAV19*01 TRAJ4*01 19.0 1197.0 TGTGCCAGCAGTGAAATGTGGGGAGCACCCCTCCACTTT CASSEMWGAPLHF TRBV2*01 TRBJ1-6*01 26.0 1171.0 CALIFFW??tGSCRLIF_CASSEMWGAPLHF 1 5259 NP44-52 FLU 0.83 474 NP44-52 113 5146 7 InfluenzaA NP CTELKLSDY transitional T cells between effector and memory populations PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*01:01 B2M MHCI -10236 chip0423_85728 6.3 12.65 Chip2 healthy_3 healthy TGTGCCAGCACGGGGACTAGCGATAGCACAGATACGCAGTATTTT CASTGTSDSTDTQYF TRBV2*01 TRBJ2-3*01 42.0 1928.0 _CASTGTSDSTDTQYF 9 7643 NP44-52 FLU 0.85 474 NP44-52 101 7542 7 InfluenzaA NP CTELKLSDY transitional T cells between effector and memory populations PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*01:01 B2M MHCI -10237 chip0423_50737 13.45 8.15 Chip2 T1D_5 T1D TGTGCCAGCATCCCAAAACAAGAGAACACCATATATTTT CASIPKQENTIYF TRBV12-3*01,TRBV12-4*01 TRBJ1-3*01 32.0 1285.0 _CASIPKQENTIYF 3 2828 BZLF1-190-197 EBV 0.57 2156 NEG 136 2692 10 EBV BZLF1 RAKFKQLL effector memory T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-B*08:01 B2M MHCI -10238 chip0423_258463 4.97 11.83 Chip2 healthy_4 healthy TGTGCCAGCAGTGAATTAGGGGATACGCAGTATTTT CASSELGDTQYF TRBV25-1*01 TRBJ2-3*01 61.0 2896.0 _CASSELGDTQYF 15 3868 M1 FLU 0.8 1250 NEG 103 3765 6 InfluenzaA M1 GILGFVFTL central memory T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*02:01 B2M MHCI -10239 chip0423_720123 -2.07 9.43 Chip2 healthy_3 healthy TGTGCCAGCAGTCCCGGGACAGGGGAGGACTTC CASSPGTGEDF TRBV28*01 TRBJ2-7*01 4.0 146.0 _CASSPGTGEDF 1 7552 MART1-ALA MART1 0.59 269 MART1-ALA 69 7483 3 HomoSapiens MART1 ALAGIGILTV Naive T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*02:01 B2M MHCI -10240 chip0423_297017 -4.31 8.57 Chip2 T1D_5 T1D TGTGCCAGCTGTGAAGAGAGTTGCTCTCTCAATCAGCCCCAGCATTTT CASCEESCSLNQPQHF TRBV6-1*01 TRBJ1-5*01 13.0 457.0 _CASCEESCSLNQPQHF 1 5258 INS-WMR-8 INS 0.61 17 NEG 93 5165 2 HomoSapiens INS WMRLLPLL Naive T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-B*08:01 B2M MHCI -10241 chip0423_195995 11.81 8.42 Chip2 T1D_6 T1D _ 6746 5136 EBNA3A-158-166 EBV 0.67 444 NEG 104 5032 10 EBV EBNA3A QAKWRLQTL effector memory T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-B*08:01 B2M MHCI -10242 chip0423_876774 7.1 12.92 Chip2 healthy_3 healthy TGCGCCAGCAGCCAAGATGGACTAGCGGCAACTAGCACAGATACGCAGTATTTT CASSQDGLAATSTDTQYF TRBV4-1*01 TRBJ2-3*01 25.0 728.0 _CASSQDGLAATSTDTQYF 6 5029 NP44-52 FLU 0.5 474 NEG 106 4923 7 InfluenzaA NP CTELKLSDY transitional T cells between effector and memory populations PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*01:01 B2M MHCI -10243 chip0423_545247 10.66 11.06 Chip2 healthy_4 healthy TGTGCCAGCAGCGCAACAGGGGACTACTATGGCTACACCTTC CASSATGDYYGYTF TRBV3-1*01 TRBJ1-2*01 67.0 3504.0 _CASSATGDYYGYTF 3 3551 EBV-BRLF1 EBV 1.0 1264 NEG 87 3464 9 EBV BRLF1 YVLDHLIVV effector memory T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*02:01 B2M MHCI -10244 chip0423_91711 16.13 10.97 Chip2 healthy_4 healthy TGCATCCTTCCCCTAGCTGGTGGTACTAGCTATGGAAAGCTGACATTT CILPLAGGTSYGKLTF TRAV26-2*01 TRAJ52*01 38.0 2454.0 TGTGCCAGCAGCTCCGGACAGGCCTACGAGCAGTACTTC CASSSGQAYEQYF TRBV7-8*01 TRBJ2-7*01 12.0 831.0 CILPLAGGTSYGKLTF_CASSSGQAYEQYF 40 1971 EBNA3A-193-201 EBV 0.89 1022 NEG 111 1860 12 EBV EBNA3A FLRGRAYGL effector T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-B*08:01 B2M MHCI -10245 chip0423_639544 7.23 12.91 Chip2 healthy_3 healthy TGTGCTGTGAGAGTTCGCGAATTCAGGCTACCGCACCCTCACCTTT CAVRVREtt??caGYRTLTF TRAV1-2*01 TRAJ11*01 2.0 48.0 TGCGCCAGCAGTGACATTAGGGAGGGGCAGGGTGAAGCTTTCTTT CASSDIREGQGEAFF TRBV10-2*01 TRBJ1-1*01 6.0 230.0 CAVRVREtt??caGYRTLTF_CASSDIREGQGEAFF 1 4263 NP44-52 FLU 0.67 474 NEG 102 4161 7 InfluenzaA NP CTELKLSDY transitional T cells between effector and memory populations PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*01:01 B2M MHCI -10246 chip0423_10013 -2.63 14.74 Chip2 healthy_3 healthy TGTGCTGTGCGTCTCCAGGCAGGAACTGCTCTGATCTTT CAVRLQAGTALIF TRAV20*01 TRAJ15*01 30.0 2091.0 TGCAGTGCTACGACGACCCGGACCTACGAGCAGTACTTC CSATTTRTYEQYF TRBV20-1*01 TRBJ2-7*01 21.0 1158.0 CAVRLQAGTALIF_CSATTTRTYEQYF 1 3082 NP44-52 FLU 0.59 474 NEG 89 2993 1 InfluenzaA NP CTELKLSDY Naive T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*01:01 B2M MHCI -10247 chip0423_649526 9.92 10.21 Chip2 healthy_4 healthy _ 6746 4736 BZLF1-190-197 EBV 0.8 2156 NEG 102 4634 9 EBV BZLF1 RAKFKQLL effector memory T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-B*08:01 B2M MHCI -10248 chip0423_306174 13.27 11.72 Chip2 T1D_4 T1D TGTGCTGTGAGTGATGGAGAAGGAGCCCAGAAGCTGGTATTT CAVSDGEGAQKLVF TRAV8-6*01 TRAJ54*01 2.0 24.0 TGTGCCAGCAGCTTAACGGTTCTGGCAGGTCCAAACACTGAAACTTTCTTT CASSLTVLAGPNTETFF TRBV7-3*01 TRBJ1-1*01 4.0 49.0 CAVSDGEGAQKLVF_CASSLTVLAGPNTETFF 2 2863 BZLF1-190-197 EBV 0.88 2156 BZLF1-190-197 128 2735 9 EBV BZLF1 RAKFKQLL effector memory T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-B*08:01 B2M MHCI -10249 chip0423_815616 13.19 7.37 Chip2 T1D_4 T1D TGTGCTGTGAGTGATGGAGAAGGAGCCCAGAAGCTGGTATTT CAVSDGEGAQKLVF TRAV8-6*01 TRAJ54*01 1.0 26.0 CAVSDGEGAQKLVF_ 12 3644 BZLF1-190-197 EBV 0.78 2156 NEG 126 3518 10 EBV BZLF1 RAKFKQLL effector memory T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-B*08:01 B2M MHCI -10250 chip0423_695053 16.03 11.61 Chip2 healthy_3 healthy TGTGCCAGCTGCCGGGTCGGGTCCTACGAGCAGTACTTC CASCRVGSYEQYF TRBV10-3*01 TRBJ2-7*01 41.0 1984.0 _CASCRVGSYEQYF 1 1945 NP44-52 FLU 1.0 474 NP44-52 92 1853 12 InfluenzaA NP CTELKLSDY effector T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*01:01 B2M MHCI -10251 chip0423_409485 9.25 9.19 Chip2 healthy_4 healthy TGTGCCAGCAGCTGGCTCGGGGATCGGTATAATTCACCCCTCCACTTT CASSWLGDRYNSPLHF TRBV7-9*01 TRBJ1-6*01 4.0 31.0 _CASSWLGDRYNSPLHF 44 3920 BZLF1-190-197 EBV 0.88 2156 BZLF1-190-197 129 3791 8 EBV BZLF1 RAKFKQLL effector memory T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-B*08:01 B2M MHCI -10252 chip0423_601945 -2.85 12.53 Chip2 T1D_4 T1D TGTGCAATGAGCCTATCTAACTTTGGAAATGAGAAATTAACCTTT CAMSLSNFGNEKLTF TRAV12-3*01 TRAJ48*01 1.0 44.0 TGTGCCAGCAGCTTAGGGGACAGGGACTATGGCTACACCTTC CASSLGDRDYGYTF TRBV7-2*01 TRBJ1-2*01 10.0 433.0 CAMSLSNFGNEKLTF_CASSLGDRDYGYTF 1 3986 PGT-178 PGT 0.94 1480 PGT-178 106 3880 1 HomoSapiens PGT LLAGIGTVPI Naive T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*02:01 B2M MHCI -10253 chip0423_271825 7.35 12.36 Chip2 T1D_6 T1D TGTGCTGTCTCTGGCAACACAGGCAAACTAATCTTT CAVSGNTGKLIF TRAV20*01 TRAJ37*01 23.0 1351.0 TGCGCCAGCAGCCAATGGGACAATCAGCCCCAGCATTTT CASSQWDNQPQHF TRBV4-1*01 TRBJ1-5*01 6.0 410.0 CAVSGNTGKLIF_CASSQWDNQPQHF 4 4919 INS-WMR-8 INS 0.86 17 INS-WMR-8 102 4817 7 HomoSapiens INS WMRLLPLL transitional T cells between effector and memory populations PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-B*08:01 B2M MHCI -10254 chip0423_550407 12.09 10.27 Chip2 T1D_4 T1D TGTGCTTACTACCACGCCTCAGGGCGGTTCTGTACAGCTGGTCTTT CAYYHASgg??gcGSVQLVF TRAV38-2/DV8*01 TRAJ57*01 4.0 171.0 TGTGCCAGCAGCTTAACGGTTCTGGCAGGTCCAAACACTGAAGCTTTCTTT CASSLTVLAGPNTEAFF TRBV7-3*01 TRBJ1-1*01 23.0 884.0 CAYYHASgg??gcGSVQLVF_CASSLTVLAGPNTEAFF 1 6343 BZLF1-190-197 EBV 0.76 2156 BZLF1-190-197 114 6229 9 EBV BZLF1 RAKFKQLL effector memory T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-B*08:01 B2M MHCI -10255 chip0423_831873 6.8 12.14 Chip2 T1D_4 T1D TGTGCTCTCGTGAATTATGGAGGAAGCCAAGGAAATCTCATCTTT CALVNYGGSQGNLIF TRAV19*01 TRAJ42*01 55.0 1575.0 TGTGCCGTCTGGAGGGACGGCGCCTACGAGCAGTACTTC CAVWRDGAYEQYF TRBV28*01 TRBJ2-7*01 1.0 48.0 CALVNYGGSQGNLIF_CAVWRDGAYEQYF 13 5739 EBV-LMP1-1 EBV 0.75 237 NEG 89 5650 7 EBV LMP1 YLLEMLWRL transitional T cells between effector and memory populations PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*02:01 B2M MHCI -10256 chip0423_103045 10.92 10.02 Chip2 healthy_3 healthy _ 6746 3603 GAD65-114-122 GAD65 0.89 63 GAD65-114-122 106 3497 9 HomoSapiens GAD65 VMNILLQYV effector memory T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*02:01 B2M MHCI -10257 chip0423_607102 -2.51 10.12 Chip2 healthy_4 healthy TGTGCAATGAGCGGCTCTAACTTTGGAAATGAGAAATTAACCTTT CAMSGSNFGNEKLTF TRAV12-3*01 TRAJ48*01 21.0 439.0 TGCAGTGCCCAGGTGGACAGGGGGCCCACCGGGGAGCTGTTTTTT CSAQVDRGPTGELFF TRBV20-1*01 TRBJ2-2*01 22.0 1274.0 CAMSGSNFGNEKLTF_CSAQVDRGPTGELFF 1 5087 PGT-178 PGT 0.84 1480 PGT-178 96 4991 3 HomoSapiens PGT LLAGIGTVPI Naive T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*02:01 B2M MHCI -10258 chip0423_551665 0.3 8.69 Chip2 T1D_5 T1D TGTGCCAGCAGTTACTCTCCAGCATACTACGAGCAGTACTTC CASSYSPAYYEQYF TRBV27*01 TRBJ2-7*01 2.0 71.0 _CASSYSPAYYEQYF 1 5893 G6PC2-LTS-10 IGRP 0.48 59 G6PC2-LTS-10 104 5789 4 HomoSapiens G6PC2 LTSLTILQLY Naive T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*01:01 B2M MHCI -10259 chip0423_550849 -3.92 9.69 Chip2 T1D_6 T1D TGTGCTTATACCCCCTGGGGCCCCGGTCGCCCGTTCTGTTTT CAYTPWGPGRPFCF TRAV38-1*01 TRAJ49*01 3.0 90.0 TGTGCCAGTAGTATAGATCCCGGACTAGCCCTGAACACCGGGGAGCTGTTTTTT CASSIDPGLALNTGELFF TRBV19*01 TRBJ2-2*01 51.0 1309.0 CAYTPWGPGRPFCF_CASSIDPGLALNTGELFF 1 5134 PREINS-2-10 INS 0.94 37 PREINS-2-10 105 5029 2 HomoSapiens PREINS ALWMRLLPL Naive T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*02:01 B2M MHCI -10260 chip0423_554814 13.61 12.93 Chip2 T1D_5 T1D TGTGCCAGCAGCCCCTTGGGGGACAGCGCCTACGAGCAGTACTTC CASSPLGDSAYEQYF TRBV7-9*01 TRBJ2-7*01 24.0 1282.0 _CASSPLGDSAYEQYF 3 1701 BZLF1-190-197 EBV 0.57 2156 NEG 111 1590 12 EBV BZLF1 RAKFKQLL effector T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-B*08:01 B2M MHCI -10261 chip0423_756370 11.36 11.02 Chip2 T1D_5 T1D TGTGCCAGCAGTCCAAGTGGAAGCGGGGGCAACAATGAGCAGTTCTTC CASSPSGSGGNNEQFF TRBV12-3*01,TRBV12-4*01 TRBJ2-1*01 53.0 3049.0 _CASSPSGSGGNNEQFF 3 2623 BZLF1-190-197 EBV 0.6 2156 NEG 101 2522 9 EBV BZLF1 RAKFKQLL effector memory T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-B*08:01 B2M MHCI -10262 chip0423_751613 10.88 11.48 Chip2 T1D_5 T1D _ 6746 2753 BZLF1-190-197 EBV 0.47 2156 NEG 109 2644 9 EBV BZLF1 RAKFKQLL effector memory T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-B*08:01 B2M MHCI -10263 chip0423_558853 6.78 12.52 Chip2 T1D_4 T1D _ 6746 5342 GAD65-110-118 GAD65 0.61 4 NEG 111 5231 7 HomoSapiens GAD65 FLQDVMNIL transitional T cells between effector and memory populations PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*02:01 B2M MHCI -10264 chip0423_320380 15.26 9.09 Chip2 T1D_5 T1D TGTGCAGAGATGGAAACCTCCTACGACAAGGTGATATTT CAEMETSYDKVIF TRAV13-2*01 TRAJ50*01 57.0 4473.0 TGTGCCAGCACCCACCCCCAGGATGTGAACACCGGGGAGCTGTTTTTT CASTHPQDVNTGELFF TRBV7-9*01 TRBJ2-2*01 26.0 1057.0 CAEMETSYDKVIF_CASTHPQDVNTGELFF 8 3707 BZLF1-190-197 EBV 1.0 2156 NEG 113 3594 12 EBV BZLF1 RAKFKQLL effector T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-B*08:01 B2M MHCI -10265 chip0423_753663 9.44 10.46 Chip2 T1D_5 T1D TGTGCCAGCAGCCCTCTTGGGAGCAATGAAAAACTGTTTTTT CASSPLGSNEKLFF TRBV7-9*01 TRBJ1-4*01 49.0 1466.0 _CASSPLGSNEKLFF 20 4683 BZLF1-190-197 EBV 1.0 2156 NEG 123 4560 9 EBV BZLF1 RAKFKQLL effector memory T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-B*08:01 B2M MHCI -10266 chip0423_721423 -1.15 8.89 Chip2 healthy_3 healthy TGTGCCGTGGGCCATGCCAGACTCATGTTT CAVGHARLMF TRAV12-2*01 TRAJ31*01 1.0 94.0 CAVGHARLMF_ 1 5963 PGT-178 PGT 0.5 1480 NEG 101 5862 3 HomoSapiens PGT LLAGIGTVPI Naive T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*02:01 B2M MHCI -10267 chip0423_750967 15.61 9.29 Chip2 healthy_3 healthy _ 6746 3144 GAD65-114-122 GAD65 0.5 63 NEG 113 3031 12 HomoSapiens GAD65 VMNILLQYV effector T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*02:01 B2M MHCI -10268 chip0423_742977 10.94 10.7 Chip2 healthy_3 healthy TGTGCTCTGAGTGATACCTCAGGAAACACACCTCTTGTCTTT CALSDTSGNTPLVF TRAV19*01 TRAJ29*01 3.0 135.0 TGTGCCAGCAGCCAGATGTCAGATACGCAGTATTTT CASSQMSDTQYF TRBV6-2*01,TRBV6-3*01 TRBJ2-3*01 5.0 303.0 CALSDTSGNTPLVF_CASSQMSDTQYF 1 4249 EBV-BRLF1 EBV 0.56 1264 EBV-BRLF1 114 4135 9 EBV BRLF1 YVLDHLIVV effector memory T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*02:01 B2M MHCI -10269 chip0423_697656 10.55 8.68 Chip2 healthy_4 healthy TGTGCCAGCAGCTCCGGACAGGCCTACGAGCAGTACTTC CASSSGQAYEQYF TRBV7-8*01 TRBJ2-7*01 17.0 623.0 _CASSSGQAYEQYF 49 2774 EBNA3A-193-201 EBV 0.48 1022 NEG 104 2670 10 EBV EBNA3A FLRGRAYGL effector memory T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-B*08:01 B2M MHCI -10270 chip0423_573626 11.29 8.16 Chip2 healthy_4 healthy TGTGCAGCAAGTGAAACCTCCTACGACAAGGTGATATTT CAASETSYDKVIF TRAV13-1*01 TRAJ50*01 19.0 788.0 TGTGCCAGCAGCACGACCCGCGCAGGGACTTGGCCCCTCCACTTT CASSTTRAGTWPLHF TRBV7-9*01 TRBJ1-6*01 32.0 1058.0 CAASETSYDKVIF_CASSTTRAGTWPLHF 10 4791 BZLF1-190-197 EBV 0.55 2156 NEG 110 4681 10 EBV BZLF1 RAKFKQLL effector memory T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-B*08:01 B2M MHCI -10271 chip0423_576333 15.29 10.54 Chip2 healthy_4 healthy TGTGCTGTGGAGAAGAAGAACACCGACAAGCTCATCTTT CAVEKKNTDKLIF TRAV12-2*01 TRAJ34*01 1.0 37.0 TGTGCCAGCAGCCAAGGACAGGCCTACGAGCAGTACTTC CASSQGQAYEQYF TRBV7-8*01 TRBJ2-7*01 1.0 17.0 CAVEKKNTDKLIF_CASSQGQAYEQYF 1 3087 BZLF1-190-197 EBV 0.8 2156 NEG 104 2983 12 EBV BZLF1 RAKFKQLL effector T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-B*08:01 B2M MHCI -10272 chip0423_707306 14.52 10.12 Chip2 healthy_4 healthy TGTGCAGCAACCCTATATGACAAGATCATCTTT CAATLYDKIIF TRAV29/DV5*01 TRAJ30*01 16.0 2138.0 TGCGCCAGCAGCTGGGGACAGGGACCTACCTACGAGCAGTACTTC CASSWGQGPTYEQYF TRBV4-1*01 TRBJ2-7*01 3.0 79.0 CAATLYDKIIF_CASSWGQGPTYEQYF 2 2921 BZLF1-190-197 EBV 0.59 2156 NEG 105 2816 12 EBV BZLF1 RAKFKQLL effector T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-B*08:01 B2M MHCI -10273 chip0423_492121 14.11 12.9 Chip2 healthy_4 healthy _ 6746 2257 BZLF1-190-197 EBV 0.82 2156 NEG 114 2143 12 EBV BZLF1 RAKFKQLL effector T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-B*08:01 B2M MHCI -10274 chip0423_695594 -3.04 14.48 Chip2 T1D_6 T1D _ 6746 3025 NP140-148 FLU 0.5 102 NEG 92 2933 1 InfluenzaA NP HSNLNDATY Naive T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*01:01 B2M MHCI -10275 chip0423_411904 8.08 13.71 Chip2 T1D_6 T1D TGTGCAGTGCCAATCCTGTGTTATGGAGGCGGCCGCGGCACTCTCATTTTT CAVPILCYGGGRGTLIF TRAV25*01 TRAJ42*01 6.0 144.0 TGTGCCAGTAGCGTGTTTAGCACTCAGCCCCAGCATTTT CASSVFSTQPQHF TRBV19*01 TRBJ1-5*01 6.0 325.0 CAVPILCYGGGRGTLIF_CASSVFSTQPQHF 1 3598 M1 FLU 0.64 1250 M1 106 3492 7 InfluenzaA M1 GILGFVFTL transitional T cells between effector and memory populations PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*02:01 B2M MHCI -10276 chip0423_93032 11.02 10.29 Chip2 T1D_4 T1D TGTGCCAGCAGCCAAGTCGACAACCCGGGGGATGGCTACACCTTC CASSQVDNPGDGYTF TRBV14*01 TRBJ1-2*01 5.0 143.0 _CASSQVDNPGDGYTF 1 4097 EBNA3A-158-166 EBV 0.8 444 EBNA3A-158-166 105 3992 9 EBV EBNA3A QAKWRLQTL effector memory T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-B*08:01 B2M MHCI -10277 chip0423_16586 -3.86 12.69 Chip2 T1D_6 T1D TGTGCCGTGACCGGCGGCTACAATAAGCTGATTTTT CAVTGGYNKLIF TRAV12-2*01 TRAJ4*01 15.0 2028.0 TGTGCCAGCAGTCCGAGCGGGGCATTCCACGACGAGCAGTACTTC CASSPSGAFHDEQYF TRBV27*01 TRBJ2-7*01 14.0 954.0 CAVTGGYNKLIF_CASSPSGAFHDEQYF 1 4795 MART1-A28L MART1 0.8 84 MART1-A28L 105 4690 1 HomoSapiens MART1 ALGIGILTV Naive T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*02:01 B2M MHCI -10278 chip0423_792116 6.48 11.16 Chip2 healthy_4 healthy TGCAGTGCCTGGACTAGCGACTCCTACAATGAGCAGTTCTTC CSAWTSDSYNEQFF TRBV20-1*01 TRBJ2-1*01 25.0 1941.0 _CSAWTSDSYNEQFF 5 4642 M1 FLU 0.9 1250 NEG 98 4544 7 InfluenzaA M1 GILGFVFTL transitional T cells between effector and memory populations PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*02:01 B2M MHCI -10279 chip0423_418127 -2.83 13.92 Chip2 healthy_3 healthy TGTGCTCTATACAATAACAATGACATGCGCTTT CALYNNNDMRF TRAV12-1*01 TRAJ43*01 8.0 827.0 CALYNNNDMRF_ 1 2851 G6PC2-LTS-10 IGRP 0.9 59 G6PC2-LTS-10 109 2742 1 HomoSapiens G6PC2 LTSLTILQLY Naive T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*01:01 B2M MHCI -10280 chip0423_259524 5.56 11.98 Chip2 healthy_3 healthy TGTGCAGGTAATTATGGAGGAAGCCAAGGAAATCTCATCTTT CAGNYGGSQGNLIF TRAV25*01 TRAJ42*01 67.0 3308.0 CAGNYGGSQGNLIF_ 2 8087 M1 FLU 0.64 1250 NEG 91 7996 7 InfluenzaA M1 GILGFVFTL transitional T cells between effector and memory populations PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*02:01 B2M MHCI -10281 chip0423_334941 -3.04 10.56 Chip2 T1D_4 T1D TGTGCAACGGGCATATCTAACTTTGGAAATGAGAAATTAACCTTT CATGISNFGNEKLTF TRAV12-3*01 TRAJ48*01 94.0 3911.0 TGTGCCAGCAGCCAAGAAAGGGCTTCGGGAGGAGACGAGCAGTACTTC CASSQERASGGDEQYF TRBV14*01 TRBJ2-7*01 4.0 129.0 CATGISNFGNEKLTF_CASSQERASGGDEQYF 1 5187 PGT-178 PGT 0.93 1480 PGT-178 103 5084 3 HomoSapiens PGT LLAGIGTVPI Naive T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*02:01 B2M MHCI -10282 chip0423_777315 7.14 13.46 Chip2 healthy_3 healthy TGTGCAGGGCGGTCAGGAGGAGGTGCTGACGGACTCACCTTT CAGRSGGGADGLTF TRAV25*01 TRAJ45*01 1.0 34.0 CAGRSGGGADGLTF_ 1 3648 M1 FLU 0.53 1250 NEG 112 3536 7 InfluenzaA M1 GILGFVFTL transitional T cells between effector and memory populations PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*02:01 B2M MHCI -10283 chip0423_274223 10.16 8.79 Chip2 T1D_5 T1D TGTGCAGCGGCGGAAACCTCCTACGACAAGGTGATATTT CAAAETSYDKVIF TRAV13-1*01 TRAJ50*01 22.0 2051.0 TGTGCCAGCCAACTAGCGGGAGGCACCGGGGAGCTGTTTTTT CASQLAGGTGELFF TRBV24-1*01 TRBJ2-2*01 6.0 334.0 CAAAETSYDKVIF_CASQLAGGTGELFF 131 3785 BZLF1-190-197 EBV 0.44 2156 NEG 130 3655 8 EBV BZLF1 RAKFKQLL effector memory T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-B*08:01 B2M MHCI -10284 chip0423_808470 -0.61 8.81 Chip2 T1D_6 T1D TGCAGTGTGACGGGGCCCCGCTCCTACGCGCAGTACTGC CSVTGPRSYAQYC TRBV20-1*01 TRBJ2-7*01 4.0 876.0 _CSVTGPRSYAQYC 1 4959 IGRP-265-273 IGRP 0.84 34 IGRP-265-273 93 4866 4 HomoSapiens IGRP VLFGLGFAI Naive T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*02:01 B2M MHCI -10285 chip0423_490977 13.54 10.31 Chip2 healthy_3 healthy TGTGCCAGCAGTTTATACAGTAATGAGCAGTTCTTC CASSLYSNEQFF TRBV28*01 TRBJ2-1*01 39.0 3295.0 _CASSLYSNEQFF 1 4283 EBV-BRLF1 EBV 0.47 1264 EBV-BRLF1 102 4181 12 EBV BRLF1 YVLDHLIVV effector T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*02:01 B2M MHCI -10286 chip0423_371694 -2.63 9.05 Chip2 T1D_6 T1D TGTGCAATGAGCGCGTCGAACTTTGGAAATGAGAAATTAACCTTT CAMSASNFGNEKLTF TRAV12-3*01 TRAJ48*01 46.0 1941.0 CAMSASNFGNEKLTF_ 3 6441 PGT-178 PGT 0.61 1480 PGT-178 98 6343 2 HomoSapiens PGT LLAGIGTVPI Naive T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*02:01 B2M MHCI -10287 chip0423_789409 15.12 12.81 Chip2 healthy_3 healthy _ 6746 2395 NP44-52 FLU 0.65 474 NP44-52 119 2276 12 InfluenzaA NP CTELKLSDY effector T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*01:01 B2M MHCI -10288 chip0423_573086 5.57 10.03 Chip2 T1D_4 T1D TGTGCCAGCAGCCTGATGGCGGGGGGCACAGACACGCAGTATTTT CASSLMAGGTDTQYF TRBV27*01 TRBJ2-3*01 22.0 1214.0 _CASSLMAGGTDTQYF 1 8399 EBV-LMP1-2 EBV 0.71 41 EBV-LMP1-2 100 8299 6 EBV LMP1 YLQQNWWTL central memory T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*02:01 B2M MHCI -10289 chip0423_374675 5.93 13.49 Chip2 healthy_3 healthy TGTGTGGTGAACGGGGAAAATGCCAGACTCATGTTT CVVNGENARLMF TRAV12-1*01 TRAJ31*01 8.0 985.0 TGTGCCAGCAGTGAAATGTGGGGAGCACCCCTCCACTTT CASSEMWGAPLHF TRBV2*01 TRBJ1-6*01 26.0 1389.0 CVVNGENARLMF_CASSEMWGAPLHF 12 6106 NP44-52 FLU 0.8 474 NP44-52 99 6007 7 InfluenzaA NP CTELKLSDY transitional T cells between effector and memory populations PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*01:01 B2M MHCI -10290 chip0423_430026 -2.48 7.35 Chip2 healthy_3 healthy TGTGCAATGAGCCTATCTAACTTTGGAAATGAGAAATTAACCTTT CAMSLSNFGNEKLTF TRAV12-3*01 TRAJ48*01 1.0 10.0 TGCAGTGCTAGACTAGCGGGAGGCCGCCAGATGATGGATACGCAGTATTTT CSARLAGGRQMMDTQYF TRBV20-1*01 TRBJ2-3*01 23.0 1030.0 CAMSLSNFGNEKLTF_CSARLAGGRQMMDTQYF 1 8311 PGT-178 PGT 0.86 1480 PGT-178 101 8210 3 HomoSapiens PGT LLAGIGTVPI Naive T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*02:01 B2M MHCI -10291 chip0423_155239 8.06 7.9 Chip2 T1D_5 T1D TGTGCAGCAAGCGAGACCTCCTACGACAAGGTGATATTT CAASETSYDKVIF TRAV13-1*01 TRAJ50*01 27.0 2002.0 CAASETSYDKVIF_ 51 4204 BZLF1-190-197 EBV 0.61 2156 BZLF1-190-197 100 4104 8 EBV BZLF1 RAKFKQLL effector memory T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-B*08:01 B2M MHCI -10292 chip0423_94852 15.0 12.79 Chip2 T1D_4 T1D TGTGCCAGCAGCTTAGCGGTCGGAGAAGGGCCCCAGCATTTT CASSLAVGEGPQHF TRBV7-9*01 TRBJ1-5*01 44.0 1704.0 _CASSLAVGEGPQHF 113 2300 BZLF1-190-197 EBV 0.71 2156 BZLF1-190-197 117 2183 12 EBV BZLF1 RAKFKQLL effector T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-B*08:01 B2M MHCI -10293 chip0423_380544 6.46 12.38 Chip2 healthy_3 healthy TGCAGCGCCAGGGCGCCGAACACCGGGGAGCTGTTTTTT CSARAPNTGELFF TRBV29-1*01 TRBJ2-2*01 73.0 6874.0 _CSARAPNTGELFF 1 5259 IGRP-211-219 IGRP 0.62 13 NEG 86 5173 7 HomoSapiens IGRP NLFLFLFAV transitional T cells between effector and memory populations PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*02:01 B2M MHCI -10294 chip0423_628846 9.29 11.71 Chip2 T1D_5 T1D _ 6746 3114 BZLF1-190-197 EBV 0.62 2156 NEG 114 3000 7 EBV BZLF1 RAKFKQLL transitional T cells between effector and memory populations PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-B*08:01 B2M MHCI -10295 chip0423_77409 11.12 10.38 Chip2 T1D_4 T1D TGTGCCAGCAGCCAAGTCAACAACCCGGGGGATGGCTACACCTTC CASSQVNNPGDGYTF TRBV14*01 TRBJ1-2*01 11.0 356.0 _CASSQVNNPGDGYTF 94 3954 EBNA3A-158-166 EBV 0.65 444 NEG 114 3840 9 EBV EBNA3A QAKWRLQTL effector memory T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-B*08:01 B2M MHCI -10296 chip0423_803391 10.91 11.24 Chip2 healthy_3 healthy TGTGCCGTGAAGGAGGGAGGAAAGCTTATCTTC CAVKEGGKLIF TRAV8-1*01 TRAJ23*01 5.0 412.0 CAVKEGGKLIF_ 5 2974 EBV-BRLF1 EBV 0.65 1264 NEG 110 2864 9 EBV BRLF1 YVLDHLIVV effector memory T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*02:01 B2M MHCI -10297 chip0423_376494 -2.25 7.67 Chip2 healthy_3 healthy _ 6746 4996 PGT-178 PGT 0.92 1480 PGT-178 97 4899 4 HomoSapiens PGT LLAGIGTVPI Naive T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*02:01 B2M MHCI -10298 chip0423_715248 7.61 12.42 Chip2 healthy_3 healthy TGTGCCCCTGCATCAGGAGGAAGCTACATACCTACATTT CAPASGGSYIPTF TRAV24*01 TRAJ6*01 11.0 562.0 TGTGCCAGCTGCCGGGACGGGACCTACGAGCAGTACTTC CASCRDGTYEQYF TRBV10-3*01 TRBJ2-7*01 54.0 2820.0 CAPASGGSYIPTF_CASCRDGTYEQYF 10 4864 NP44-52 FLU 0.72 474 NP44-52 100 4764 7 InfluenzaA NP CTELKLSDY transitional T cells between effector and memory populations PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*01:01 B2M MHCI -10299 chip0423_418267 -3.31 12.28 Chip2 T1D_5 T1D TGTGCCAGCAGCTTAGTGGTCAGTAGCTCCTACAATGAGCAGTTCTTC CASSLVVSSSYNEQFF TRBV7-9*01 TRBJ2-1*01 25.0 1014.0 _CASSLVVSSSYNEQFF 1 3834 G6PC2-PTH-9 IGRP 0.56 7 NEG 86 3748 1 HomoSapiens G6PC2 PTHEEHLFY Naive T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*01:01 B2M MHCI -10300 chip0423_760211 7.31 12.72 Chip2 healthy_3 healthy _ 6746 5063 NP44-52 FLU 0.65 474 NP44-52 108 4955 7 InfluenzaA NP CTELKLSDY transitional T cells between effector and memory populations PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*01:01 B2M MHCI -10301 chip0423_317961 11.73 6.95 Chip2 T1D_5 T1D TGCCGTGCTAGCCGGTCGGGACAGGGGATTCAAAACACCATATATTTT CRASRSGQGIQNTIYF TRBV20-1*01 TRBJ1-3*01 3.0 144.0 _CRASRSGQGIQNTIYF 1 3985 BZLF1-190-197 EBV 0.61 2156 BZLF1-190-197 119 3866 10 EBV BZLF1 RAKFKQLL effector memory T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-B*08:01 B2M MHCI -10302 chip0423_857909 -3.17 12.09 Chip2 healthy_4 healthy TGTGCTCTGGCCGCCATTGTCTTGCGCTTT CALAAIVLRF TRAV16*01 TRAJ43*01 9.0 592.0 CALAAIVLRF_ 1 3928 PGT-178 PGT 0.93 1480 NEG 118 3810 1 HomoSapiens PGT LLAGIGTVPI Naive T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*02:01 B2M MHCI -10303 chip0423_390707 11.25 12.28 Chip2 T1D_5 T1D TGTGCAGCGGCGGAAACCTCCTACGACAAGGTGATATTT CAAAETSYDKVIF TRAV13-1*01 TRAJ50*01 10.0 1439.0 TGTGCCAGCCAACTAGCGGGAGGCACCGGGGAGCTGTCTTTT CASQLAGGTGELSF TRBV24-1*01 TRBJ2-2*01 16.0 706.0 CAAAETSYDKVIF_CASQLAGGTGELSF 1 4732 BZLF1-190-197 EBV 0.83 2156 BZLF1-190-197 117 4615 11 EBV BZLF1 RAKFKQLL effector T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-B*08:01 B2M MHCI -10304 chip0423_727665 10.8 10.39 Chip2 healthy_4 healthy TGTGCAGCAAGTGAAACCTCCTACGACAAGGTGATATTT CAASETSYDKVIF TRAV13-1*01 TRAJ50*01 29.0 2168.0 CAASETSYDKVIF_ 51 4824 BZLF1-190-197 EBV 0.71 2156 NEG 103 4721 9 EBV BZLF1 RAKFKQLL effector memory T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-B*08:01 B2M MHCI -10305 chip0423_233565 5.96 13.7 Chip2 healthy_3 healthy TGTGCTGTTCTCCCCTCTAACGACTACAAGCTCAGCTTT CAVLPSNDYKLSF TRAV21*01 TRAJ20*01 24.0 2005.0 TGTGCCAGTATCGGAAAGACCACTAGCACAGATACGCGGTATTTT CASIGKTTSTDTRYF TRBV19*01 TRBJ2-3*01 10.0 271.0 CAVLPSNDYKLSF_CASIGKTTSTDTRYF 1 4918 NP44-52 FLU 0.7 474 NP44-52 89 4829 7 InfluenzaA NP CTELKLSDY transitional T cells between effector and memory populations PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*01:01 B2M MHCI -10306 chip0423_505599 7.04 14.32 Chip2 healthy_3 healthy _ 6746 4292 NP44-52 FLU 0.96 474 NP44-52 99 4193 7 InfluenzaA NP CTELKLSDY transitional T cells between effector and memory populations PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*01:01 B2M MHCI -10307 chip0423_198732 10.91 10.22 Chip2 healthy_3 healthy TGTGCCGTGAAGGACACCGACAAGCTCATCTTT CAVKDTDKLIF TRAV8-1*01 TRAJ34*01 1.0 93.0 CAVKDTDKLIF_ 56 4275 EBV-BRLF1 EBV 0.75 1264 EBV-BRLF1 101 4174 9 EBV BRLF1 YVLDHLIVV effector memory T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*02:01 B2M MHCI -10308 chip0423_713954 12.69 10.31 Chip2 T1D_6 T1D _ 6746 4892 EBV-BLMF1 EBV 0.5 2531 NEG 101 4791 9 EBV BLMF1 GLCTLVAML effector memory T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*02:01 B2M MHCI -10309 chip0423_565959 12.41 8.64 Chip2 T1D_6 T1D TGTGCCAGCAGCTTGGGACAGGCCTACGAGCAGTACTTC CASSLGQAYEQYF TRBV7-8*01 TRBJ2-7*01 5.0 305.0 _CASSLGQAYEQYF 175 3356 EBNA3A-193-201 EBV 0.9 1022 NEG 136 3220 10 EBV EBNA3A FLRGRAYGL effector memory T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-B*08:01 B2M MHCI -10310 chip0423_465776 11.25 10.42 Chip2 T1D_4 T1D TGTGCTGTGAGTGACACGACGTGGGTTGACAAGATCATCTTT CAVSDTTWVDKIIF TRAV3*01 TRAJ30*01 36.0 1983.0 TGTGCCAGCAGCTTAGGAGGGGGAGAGGGGGCCAGTGAGCAGTTCTTC CASSLGGGEGASEQFF TRBV7-6*01 TRBJ2-1*01 15.0 419.0 CAVSDTTWVDKIIF_CASSLGGGEGASEQFF 1 3903 EBNA3A-193-201 EBV 0.91 1022 NEG 108 3795 9 EBV EBNA3A FLRGRAYGL effector memory T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-B*08:01 B2M MHCI -10311 chip0423_158193 5.46 9.69 Chip2 healthy_3 healthy TGTGTGGCGATAGCATCAGGAGGAAGCTACATACCTACATTT CVAIASGGSYIPTF TRAV12-1*01 TRAJ6*01 9.0 501.0 TGTGCCAGCAGCCAAGATTCCACACCCCTCCACTTT CASSQDSTPLHF TRBV4-2*01 TRBJ1-6*01 24.0 966.0 CVAIASGGSYIPTF_CASSQDSTPLHF 2 3863 EBV-LMP1-2 EBV 0.6 41 NEG 88 3775 6 EBV LMP1 YLQQNWWTL central memory T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*02:01 B2M MHCI -10312 chip0423_396625 -3.07 12.77 Chip2 T1D_6 T1D TGTGCAGAGAGTAGGGAGATTTCAGGAGGAGGTGCTGACGGCCTCCCCTTT CAESREISGGGADGLPF TRAV5*01 TRAJ45*01 58.0 1172.0 TGTGCCAGCAGCTCGTGGACAGGAACTACCGGGGAGCTGTTTTT CASSSWTg?gNYRGAVF TRBV28*01 TRBJ2-2*01 8.0 413.0 CAESREISGGGADGLPF_CASSSWTg?gNYRGAVF 1 4028 GAD65-114-122 GAD65 0.95 63 GAD65-114-122 107 3921 1 HomoSapiens GAD65 VMNILLQYV Naive T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*02:01 B2M MHCI -10313 chip0423_650261 11.78 12.65 Chip2 T1D_5 T1D TGTGCTACTCCAACTGGGGCAAACAACCTCTTCTTT CATPTGANNLFF TRAV35*01 TRAJ36*01 13.0 1460.0 TGTGCCAGCAGCTTATTGGGCTCGGTGGACACTGAAGCTTTCTTT CASSLLGSVDTEAFF TRBV7-9*01 TRBJ1-1*01 42.0 1341.0 CATPTGANNLFF_CASSLLGSVDTEAFF 3 2148 BZLF1-190-197 EBV 0.83 2156 NEG 136 2012 11 EBV BZLF1 RAKFKQLL effector T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-B*08:01 B2M MHCI -10314 chip0423_220386 -3.58 8.18 Chip2 healthy_3 healthy TGTGCCTCGGGAGGAAGCTACATACCTACATTT CASGGSYIPTF TRAV12-1*01 TRAJ6*01 35.0 2899.0 TGTGCCAGCAGCGAACAGGGGTCTACCTACGAGCAGTACTTC CASSEQGSTYEQYF TRBV7-2*01 TRBJ2-7*01 30.0 1047.0 CASGGSYIPTF_CASSEQGSTYEQYF 1 6159 PGT-178 PGT 0.93 1480 PGT-178 94 6065 2 HomoSapiens PGT LLAGIGTVPI Naive T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*02:01 B2M MHCI -10315 chip0423_349693 10.15 7.09 Chip2 healthy_4 healthy _ 6746 6002 BZLF1-190-197 EBV 0.67 2156 NEG 121 5881 10 EBV BZLF1 RAKFKQLL effector memory T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-B*08:01 B2M MHCI -10316 chip0423_284938 8.53 7.86 Chip2 T1D_4 T1D _ 6746 8479 BZLF1-190-197 EBV 0.82 2156 BZLF1-190-197 104 8375 8 EBV BZLF1 RAKFKQLL effector memory T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-B*08:01 B2M MHCI -10317 chip0423_274026 10.79 10.59 Chip2 healthy_4 healthy TGTGCTTATCGGGAATATGGAAACAAGCTGGTCTTT CAYREYGNKLVF TRAV38-1*01 TRAJ47*01 8.0 893.0 TGTGCCAGCAGCCAGACATTTCCGAACACCGGGGAGCTGTTTTTT CASSQTFPNTGELFF TRBV3-1*01 TRBJ2-2*01 25.0 1197.0 CAYREYGNKLVF_CASSQTFPNTGELFF 1 4129 BZLF1-190-197 EBV 0.57 2156 NEG 130 3999 9 EBV BZLF1 RAKFKQLL effector memory T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-B*08:01 B2M MHCI -10318 chip0423_15632 6.21 13.28 Chip2 T1D_5 T1D TGTGCCAGTAGTATGATGACAGGGGATTCCTATAATTCACCCCTCCACTTT CASSMMTGDSYNSPLHF TRBV19*01 TRBJ1-6*01 43.0 994.0 _CASSMMTGDSYNSPLHF 3 4215 NP44-52 FLU 0.86 474 NP44-52 105 4110 7 InfluenzaA NP CTELKLSDY transitional T cells between effector and memory populations PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*01:01 B2M MHCI -10319 chip0423_129588 -4.47 10.13 Chip2 healthy_3 healthy _ 6746 4353 INS-2-11 INS 0.7 5 INS-2-11 85 4268 2 HomoSapiens INS ALWMRLLPLL Naive T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*02:01 B2M MHCI -10320 chip0423_797227 5.15 10.65 Chip2 healthy_3 healthy TGTGCCAGCAGCTTAGATGGGACAGGGTACTACGAGCAGTACTTC CASSLDGTGYYEQYF TRBV7-2*01 TRBJ2-7*01 22.0 694.0 _CASSLDGTGYYEQYF 1 8899 PB1-590-599 FLU 0.83 37 NEG 104 8795 6 InfluenzaA PB1 LVSDGGPNLY central memory T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*01:01 B2M MHCI -10321 chip0423_572740 -3.71 12.12 Chip2 healthy_3 healthy TGTGCCAGCAGCGGTCTCGCGGGAGCGATTAACACCGGGGAGCTGTTTTTT CASSGLAGAINTGELFF TRBV5-6*01 TRBJ2-2*01 44.0 1742.0 _CASSGLAGAINTGELFF 1 4409 MART1-A28L MART1 0.67 84 NEG 104 4305 1 HomoSapiens MART1 ALGIGILTV Naive T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*02:01 B2M MHCI -10322 chip0423_289860 -2.27 12.61 Chip2 T1D_5 T1D TGTGCCAGTAGTTTCCGGGACAGCAATTACGAGCAGTACTTC CASSFRDSNYEQYF TRBV19*01 TRBJ2-7*01 12.0 464.0 _CASSFRDSNYEQYF 1 3080 EBNA3A-158-166 EBV 0.95 444 EBNA3A-158-166 97 2983 1 EBV EBNA3A QAKWRLQTL Naive T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-B*08:01 B2M MHCI -10323 chip0423_149015 7.94 8.54 Chip2 healthy_3 healthy _ 6746 8398 NP44-52 FLU 0.69 474 NP44-52 104 8294 8 InfluenzaA NP CTELKLSDY effector memory T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*01:01 B2M MHCI -10324 chip0423_824845 9.43 11.45 Chip2 T1D_4 T1D TGTGCCAGCAGCTTAGGAGGGGGAGAGGGGGCCAGTGAGCAGTTCTTC CASSLGGGEGASEQFF TRBV7-6*01 TRBJ2-1*01 25.0 1751.0 _CASSLGGGEGASEQFF 10 5200 EBNA3A-193-201 EBV 0.57 1022 NEG 109 5091 9 EBV EBNA3A FLRGRAYGL effector memory T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-B*08:01 B2M MHCI -10325 chip0423_358153 -3.76 12.0 Chip2 T1D_4 T1D TGTGCAATGAGCGCATCTAACTTTGGAAATGAGAAATTAACCTTT CAMSASNFGNEKLTF TRAV12-3*01 TRAJ48*01 46.0 2092.0 CAMSASNFGNEKLTF_ 3 3542 PGT-178 PGT 0.85 1480 NEG 96 3446 1 HomoSapiens PGT LLAGIGTVPI Naive T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*02:01 B2M MHCI -10326 chip0423_97688 11.65 10.96 Chip2 healthy_3 healthy TGTGCCAGCAGTGAAATGTGGGGAGCACCCCTCCACTTT CASSEMWGAPLHF TRBV2*01 TRBJ1-6*01 9.0 354.0 _CASSEMWGAPLHF 14 4072 NP44-52 FLU 0.74 474 NP44-52 99 3973 9 InfluenzaA NP CTELKLSDY effector memory T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*01:01 B2M MHCI -10327 chip0423_478181 -2.78 7.75 Chip2 T1D_6 T1D TGTGCCAGCAGCTTGGGGACTTCGAGCACAGATACGCAGTATTTT CASSLGTSSTDTQYF TRBV7-9*01 TRBJ2-3*01 20.0 890.0 _CASSLGTSSTDTQYF 1 7026 IGRP-152-160-MLI IGRP 0.46 6 NEG 116 6910 3 HomoSapiens IGRP FLWSVFMLI Naive T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*02:01 B2M MHCI -10328 chip0423_144473 11.67 9.43 Chip2 healthy_4 healthy _ 6746 4518 BZLF1-190-197 EBV 0.78 2156 NEG 116 4402 10 EBV BZLF1 RAKFKQLL effector memory T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-B*08:01 B2M MHCI -10329 chip0423_76386 -1.54 8.58 Chip2 T1D_4 T1D TGTGCCGTGAACATGGGTGCAGGCCAATCAACCTTT CAVNMGAGQSTF TRAV12-2*01 TRAJ27*01 2.0 95.0 TGTGCCAGCAGCTTATCGAATGAAGCTTTCTTT CASSLSNEAFF TRBV7-9*01 TRBJ1-1*01 1.0 36.0 CAVNMGAGQSTF_CASSLSNEAFF 1 8017 POL-132-140 HIV 0.4 37 NEG 89 7928 3 HIV-1 POL LVGPTPVNI Naive T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*02:01 B2M MHCI -10330 chip0423_545588 11.72 13.26 Chip2 T1D_4 T1D _ 6746 2645 EBNA3A-193-201 EBV 0.8 1022 NEG 96 2549 11 EBV EBNA3A FLRGRAYGL effector T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-B*08:01 B2M MHCI -10331 chip0423_260478 11.06 10.81 Chip2 healthy_4 healthy _ 6746 3875 BZLF1-190-197 EBV 0.7 2156 NEG 96 3779 9 EBV BZLF1 RAKFKQLL effector memory T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-B*08:01 B2M MHCI -10332 chip0423_169376 11.06 12.09 Chip2 T1D_4 T1D _ 6746 2865 BZLF1-190-197 EBV 0.8 2156 NEG 102 2763 9 EBV BZLF1 RAKFKQLL effector memory T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-B*08:01 B2M MHCI -10333 chip0423_141456 10.49 10.11 Chip2 healthy_3 healthy _ 6746 4155 EBV-BRLF1 EBV 0.59 1264 EBV-BRLF1 98 4057 9 EBV BRLF1 YVLDHLIVV effector memory T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*02:01 B2M MHCI -10334 chip0423_778317 -2.82 9.62 Chip2 T1D_6 T1D TGTGCTGTCACTAGCAACACAGGCAAACTAATCTTT CAVTSNTGKLIF TRAV12-1*01 TRAJ37*01 21.0 2001.0 CAVTSNTGKLIF_ 1 6540 GFAP-ALD-9 GFAP 0.71 11 GFAP-ALD-9 107 6433 2 HomoSapiens GFAP ALDIEIATY Naive T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*01:01 B2M MHCI -10335 chip0423_668900 10.68 10.61 Chip2 healthy_4 healthy TGTGCAGCAAGCGCAGAAGCCAGACTCATGTTT CAASAEARLMF TRAV29/DV5*01 TRAJ31*01 15.0 1416.0 TGTGCCAGCAGGGTAGGCCGAGAACCCACCGGAGAGCTGTTTTTT CASRVGREPTGELFF TRBV3-1*01 TRBJ2-2*01 17.0 621.0 CAASAEARLMF_CASRVGREPTGELFF 2 3048 BZLF1-190-197 EBV 0.88 2156 NEG 113 2935 9 EBV BZLF1 RAKFKQLL effector memory T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-B*08:01 B2M MHCI -10336 chip0423_448523 -4.12 9.64 Chip2 T1D_6 T1D TGTGCCAGCAGTTACCCCCGGTCGAACACCGGGGAGCTGTTTTTT CASSYPRSNTGELFF TRBV6-2*01,TRBV6-3*01 TRBJ2-2*01 54.0 1553.0 _CASSYPRSNTGELFF 1 5084 ZNT8-145-153 ZNT8 0.42 14 NEG 125 4959 2 HomoSapiens ZNT8 LLSILCIWV Naive T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*02:01 B2M MHCI -10337 chip0423_361804 6.12 13.13 Chip2 healthy_3 healthy TGTGCTGTGAGAAGGCACCAGGCAGGAACTGCTCTGATCTTT CAVRRHQAGTALIF TRAV3*01 TRAJ15*01 18.0 2233.0 CAVRRHQAGTALIF_ 2 5132 NP44-52 FLU 0.79 474 NP44-52 109 5023 7 InfluenzaA NP CTELKLSDY transitional T cells between effector and memory populations PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*01:01 B2M MHCI -10338 chip0423_412274 7.82 8.87 Chip2 healthy_4 healthy _ 6746 8090 BZLF1-190-197 EBV 0.77 2156 NEG 103 7987 8 EBV BZLF1 RAKFKQLL effector memory T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-B*08:01 B2M MHCI -10339 chip0423_263071 -2.51 10.69 Chip2 T1D_4 T1D TCCATCCTCTGACCCTCGTAACCCGTTCTCTTTT SIL*Ptc??gtNPFSF TRAV26-2*01 TRAJ49*01 14.0 1610.0 SIL*Ptc??gtNPFSF_ 1 4133 PGT-178 PGT 0.5 1480 PGT-178 86 4047 3 HomoSapiens PGT LLAGIGTVPI Naive T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*02:01 B2M MHCI -10340 chip0423_11551 -3.39 13.8 Chip2 T1D_6 T1D TGTGCCAGCAGCCACGCTCCTTCAGGGGAGTTCAAAAACATTCAGTACTTC CASSHAPSGEFKNIQYF TRBV4-2*01 TRBJ2-4*01 72.0 2570.0 _CASSHAPSGEFKNIQYF 1 3800 EBV-BRLF1 EBV 0.88 1264 NEG 111 3689 1 EBV BRLF1 YVLDHLIVV Naive T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*02:01 B2M MHCI -10341 chip0423_421517 8.29 13.73 Chip2 T1D_6 T1D TGTGCCTCCCAAGGAGGAAGCCAAGGAAATCTCATCTTT CASQGGSQGNLIF TRAV20*01 TRAJ42*01 13.0 747.0 CASQGGSQGNLIF_ 7 2121 ROTA-VP6 ROTA 0.64 47 NEG 117 2004 7 RotavirusA VP6 TLLANVTAV transitional T cells between effector and memory populations PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*02:01 B2M MHCI -10342 chip0423_806347 12.47 8.34 Chip2 T1D_4 T1D TGCGCCAGCAGCTTGGAGCTGGGGCTTCCCTACGAGCAGTACTTC CASSLELGLPYEQYF TRBV5-1*01 TRBJ2-7*01 12.0 672.0 _CASSLELGLPYEQYF 8 2804 EBNA3A-158-166 EBV 0.67 444 NEG 92 2712 10 EBV EBNA3A QAKWRLQTL effector memory T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-B*08:01 B2M MHCI -10343 chip0423_549781 15.3 10.93 Chip2 T1D_5 T1D TGTGCCAGCAACCATACCCAAGATATCCCCAACTATGGCTACACCTTC CASNHTQDIPNYGYTF TRBV12-3*01,TRBV12-4*01 TRBJ1-2*01 1.0 50.0 _CASNHTQDIPNYGYTF 1 2646 BZLF1-190-197 EBV 0.45 2156 NEG 94 2552 12 EBV BZLF1 RAKFKQLL effector T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-B*08:01 B2M MHCI -10344 chip0423_314539 5.98 12.09 Chip2 healthy_3 healthy TGTGCCAGCACGGGGACTAGCGATAGCACAGATACGCAGTATTTT CASTGTSDSTDTQYF TRBV2*01 TRBJ2-3*01 13.0 677.0 _CASTGTSDSTDTQYF 9 5899 NP44-52 FLU 1.0 474 NP44-52 97 5802 7 InfluenzaA NP CTELKLSDY transitional T cells between effector and memory populations PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*01:01 B2M MHCI -10345 chip0423_10003 15.65 10.55 Chip2 healthy_4 healthy TGCATCCCTCCCCTAGCTGGTGGTACTAGCTATGGAAAGCTGACATTT CIPPLAGGTSYGKLTF TRAV26-2*01 TRAJ52*01 71.0 3721.0 TGTGCCAGCAGCTCCGGACAGGCCTACGAGCAGTACTTC CASSSGQAYEQYF TRBV7-8*01 TRBJ2-7*01 14.0 1220.0 CIPPLAGGTSYGKLTF_CASSSGQAYEQYF 1 3424 EBNA3A-193-201 EBV 0.94 1022 EBNA3A-193-201 108 3316 12 EBV EBNA3A FLRGRAYGL effector T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-B*08:01 B2M MHCI -10346 chip0423_690129 -3.81 12.75 Chip2 healthy_3 healthy TGTGCAATGAGCGAGGGCAACTTTGGAATGAGAAATTAACCTTT CAMSEGNt?tWNEKLTF TRAV12-3*01 TRAJ48*01 44.0 1957.0 CAMSEGNt?tWNEKLTF_ 1 4149 PGT-178 PGT 0.76 1480 PGT-178 84 4065 1 HomoSapiens PGT LLAGIGTVPI Naive T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*02:01 B2M MHCI -10347 chip0423_321383 -2.03 12.73 Chip2 T1D_4 T1D TGTACAATGAGCGGGTCTAACTTTGGAAATGAGAAATTAACCTTT CTMSGSNFGNEKLTF TRAV12-3*01 TRAJ48*01 78.0 2712.0 TGTGCCAGCAGCCAAGATCTCGGGACACCAGCAACTAATGAAAAACTGTTTTTT CASSQDLGTPATNEKLFF TRBV14*01 TRBJ1-4*01 9.0 179.0 CTMSGSNFGNEKLTF_CASSQDLGTPATNEKLFF 1 5072 PGT-178 PGT 0.59 1480 PGT-178 120 4952 1 HomoSapiens PGT LLAGIGTVPI Naive T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*02:01 B2M MHCI -10348 chip0423_605636 11.29 7.37 Chip2 healthy_4 healthy TCCCTTCTTCCCCTAGCTGGTGTTCCTCCCTATGGCCCGCTGACATTT SLLPLAGVPPYGPLTF TRAV26-2*01 TRAJ52*01 5.0 402.0 TGTGCCAGCAGCTCCGAACAGGCCTACGAGCAGTACTTC CASSSEQAYEQYF TRBV7-8*01 TRBJ2-7*01 12.0 486.0 SLLPLAGVPPYGPLTF_CASSSEQAYEQYF 1 4342 EBNA3A-193-201 EBV 0.73 1022 NEG 128 4214 10 EBV EBNA3A FLRGRAYGL effector memory T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-B*08:01 B2M MHCI -10349 chip0423_671900 11.68 9.65 Chip2 T1D_4 T1D TGTGCTGTCAATTCAGGAAACACACCTCTTGTCTTT CAVNSGNTPLVF TRAV1-2*01 TRAJ29*01 5.0 559.0 TGTGCCAGCAGCCAAGTCAACAACCCGGGGGATGGCTACACCTTC CASSQVNNPGDGYTF TRBV14*01 TRBJ1-2*01 11.0 276.0 CAVNSGNTPLVF_CASSQVNNPGDGYTF 31 3706 EBNA3A-158-166 EBV 0.8 444 NEG 124 3582 10 EBV EBNA3A QAKWRLQTL effector memory T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-B*08:01 B2M MHCI -10350 chip0423_463558 9.29 10.37 Chip2 healthy_4 healthy TGCATCGTCAGAGAGACTGACACTGACATGCGCTTT CIVRETDTDMRF TRAV26-1*01 TRAJ43*01 11.0 494.0 TGCGCCAGCAGCCAAACAGGTTCCCTGAACACTGAAGCTTTCTTT CASSQTGSLNTEAFF TRBV4-1*01 TRBJ1-1*01 13.0 354.0 CIVRETDTDMRF_CASSQTGSLNTEAFF 1 5269 BZLF1-190-197 EBV 1.0 2156 NEG 107 5162 9 EBV BZLF1 RAKFKQLL effector memory T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-B*08:01 B2M MHCI -10351 chip0423_611177 14.59 10.7 Chip2 T1D_5 T1D _ 6746 2645 NP140-148 FLU 0.46 102 NEG 100 2545 12 InfluenzaA NP HSNLNDATY effector T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*01:01 B2M MHCI -10352 chip0423_374175 7.0 12.5 Chip2 T1D_6 T1D TGTGCAAGCAGCTTAGGAGGGCAGGCAGAGACTCAGTACTTC CASSLGGQAETQYF TRBV13*01 TRBJ2-5*01 4.0 311.0 _CASSLGGQAETQYF 1 6092 ROTA-VP6 ROTA 0.56 47 ROTA-VP6 95 5997 7 RotavirusA VP6 TLLANVTAV transitional T cells between effector and memory populations PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*02:01 B2M MHCI -10353 chip0423_202290 -2.17 9.47 Chip2 T1D_6 T1D TGTGCAATGAGCCTATCTAACTTTGGAAATGAGAAATTAACCTTT CAMSLSNFGNEKLTF TRAV12-3*01 TRAJ48*01 49.0 1489.0 TGTGCCAGCAGTTTGGACAGCGAAGAAGCTTTCTTT CASSLDSEEAFF TRBV28*01 TRBJ1-1*01 43.0 2627.0 CAMSLSNFGNEKLTF_CASSLDSEEAFF 1 5828 PGT-178 PGT 0.53 1480 PGT-178 88 5740 3 HomoSapiens PGT LLAGIGTVPI Naive T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*02:01 B2M MHCI -10354 chip0423_187512 12.88 10.83 Chip2 healthy_3 healthy TGTGCAGCCCGTCTGGGCTATGGAAACAAACTGGCCTTT CAARLGYGNKLAF TRAV13-1*01 TRAJ47*01 22.0 929.0 CAARLGYGNKLAF_ 1 3884 NP44-52 FLU 0.88 474 NEG 100 3784 9 InfluenzaA NP CTELKLSDY effector memory T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*01:01 B2M MHCI -10355 chip0423_30902 9.27 8.82 Chip2 healthy_3 healthy TGTGCCGTGAAGGAGGGAGGAAAGCTTATCTTC CAVKEGGKLIF TRAV8-1*01 TRAJ23*01 20.0 1902.0 TGCGCCAGCAGCCAGATGTCAGATACGCAGTATTTT CASSQMSDTQYF TRBV6-2*01,TRBV6-3*01 TRBJ2-3*01 6.0 200.0 CAVKEGGKLIF_CASSQMSDTQYF 3 5998 EBV-BRLF1 EBV 0.6 1264 EBV-BRLF1 95 5903 8 EBV BRLF1 YVLDHLIVV effector memory T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*02:01 B2M MHCI -10356 chip0423_431538 -0.88 9.74 Chip2 healthy_5 healthy _ 6746 7456 LMP2A-CPL EBV 0.61 44 NEG 96 7360 3 EBV LMP2A CPLSKILL Naive T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-B*08:01 B2M MHCI -10357 chip0423_407738 15.4 12.71 Chip2 T1D_5 T1D TGTGCAGCACAGGAGACCTCCTACGACAAGGTGATATTT CAAQETSYDKVIF TRAV13-1*01 TRAJ50*01 47.0 4128.0 TGCAGCGTGGGGGGAAACACTGAAGCTTTCTTT CSVGGNTEAFF TRBV29-1*01 TRBJ1-1*01 32.0 2396.0 CAAQETSYDKVIF_CSVGGNTEAFF 1 1852 BZLF1-190-197 EBV 0.8 2156 NEG 104 1748 12 EBV BZLF1 RAKFKQLL effector T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-B*08:01 B2M MHCI -10358 chip0423_324944 9.67 8.38 Chip2 T1D_5 T1D TGTGCCAGCAGCTTAGGACGTGAAATCGGGCCCATCGAGCAGTTCTTC CASSLGREIGPIEQFF TRBV7-8*01 TRBJ2-1*01 11.0 387.0 _CASSLGREIGPIEQFF 4 5028 BZLF1-190-197 EBV 0.83 2156 BZLF1-190-197 122 4906 8 EBV BZLF1 RAKFKQLL effector memory T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-B*08:01 B2M MHCI -10359 chip0423_612982 10.96 9.4 Chip2 healthy_5 healthy _ 6746 5198 BZLF1-190-197 EBV 0.67 2156 NEG 87 5111 9 EBV BZLF1 RAKFKQLL effector memory T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-B*08:01 B2M MHCI -10360 chip0423_539919 -4.04 12.92 Chip2 healthy_4 healthy _ 6746 3904 PGT-178 PGT 1.0 1480 NEG 86 3818 1 HomoSapiens PGT LLAGIGTVPI Naive T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*02:01 B2M MHCI -10361 chip0423_447735 10.03 8.8 Chip2 T1D_5 T1D TGTGCCAGCAGAAGTCCCGGGACAGGAAACTATGGCTACACCTTC CASRSPGTGNYGYTF TRBV2*01 TRBJ1-2*01 39.0 1350.0 _CASRSPGTGNYGYTF 2 4786 BZLF1-190-197 EBV 1.0 2156 NEG 105 4681 8 EBV BZLF1 RAKFKQLL effector memory T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-B*08:01 B2M MHCI -10362 chip0423_639162 12.02 12.28 Chip2 T1D_4 T1D TGCATCGTCAGAGCCGGAGGCGGTGCTGGCGGGCTCCCTTTT CIVRAGGGAGGLPF TRAV26-1*01 TRAJ45*01 8.0 516.0 CIVRAGGGAGGLPF_ 1 2932 BZLF1-190-197 EBV 0.65 2156 NEG 108 2824 11 EBV BZLF1 RAKFKQLL effector T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-B*08:01 B2M MHCI -10363 chip0423_25278 12.58 7.64 Chip2 T1D_4 T1D TGCCTCGTGGGTGACATCAGGAGCCTACAAATCCATCTTT CLVGDIag??gaAYKSIF TRAV4*01 TRAJ40*01 20.0 425.0 TGCGCCAGCAGCACTTCGAGGGGATCTGGAAACACCATATATTTT CASSTSRGSGNTIYF TRBV4-1*01 TRBJ1-3*01 27.0 821.0 CLVGDIag??gaAYKSIF_CASSTSRGSGNTIYF 1 3563 BZLF1-190-197 EBV 1.0 2156 NEG 108 3455 10 EBV BZLF1 RAKFKQLL effector memory T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-B*08:01 B2M MHCI -10364 chip0423_160047 -3.36 13.44 Chip2 T1D_6 T1D TGTGCCAGCAGATTAGCGGGGGCCGCCTACAATGAGCAGTTCTTC CASRLAGAAYNEQFF TRBV6-1*01 TRBJ2-1*01 69.0 3223.0 _CASRLAGAAYNEQFF 1 3388 MART1-27-35 MART1 1.0 7 NEG 92 3296 1 HomoSapiens MART1 AAGIGILTV Naive T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*02:01 B2M MHCI -10365 chip0423_742077 13.04 13.71 Chip2 T1D_4 T1D TGTGCCAGCAGCTTAGCGGTCGGAGAAGGGCCCCAGCATTTT CASSLAVGEGPQHF TRBV7-9*01 TRBJ1-5*01 30.0 1230.0 _CASSLAVGEGPQHF 113 1319 BZLF1-190-197 EBV 0.82 2156 NEG 122 1197 11 EBV BZLF1 RAKFKQLL effector T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-B*08:01 B2M MHCI -10366 chip0423_154326 11.47 8.13 Chip2 T1D_6 T1D TGTGCCAGCAGCTTGGGACAGGCCTACGAGCAGTACTTC CASSLGQAYEQYF TRBV7-8*01 TRBJ2-7*01 14.0 831.0 _CASSLGQAYEQYF 175 5956 EBNA3A-193-201 EBV 0.44 1022 EBNA3A-193-201 119 5837 10 EBV EBNA3A FLRGRAYGL effector memory T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-B*08:01 B2M MHCI -10367 chip0423_693302 -3.42 11.2 Chip2 healthy_4 healthy TGTGCCAGCAGCCAACTACCCGGGACAACCTACGAGCAGTACTTC CASSQLPGTTYEQYF TRBV3-1*01 TRBJ2-7*01 25.0 1264.0 _CASSQLPGTTYEQYF 1 4516 EBV-LMP1-2 EBV 1.0 41 NEG 104 4412 1 EBV LMP1 YLQQNWWTL Naive T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*02:01 B2M MHCI -10368 chip0423_71727 11.88 8.33 Chip2 healthy_3 healthy _ 6746 3372 GAD65-114-122 GAD65 0.73 63 GAD65-114-122 88 3284 10 HomoSapiens GAD65 VMNILLQYV effector memory T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*02:01 B2M MHCI -10369 chip0423_788620 12.46 6.43 Chip2 T1D_4 T1D TGCATCGTCAGAGTCGTGTGTACGGCACTGCCAGTAACCTCACCTTT CIVRVVCac?GTASNLTF TRAV26-1*01 TRAJ44*01 7.0 369.0 TGTGCCAGCAGCTTAGCGGTCGGAGAAGGGCCCCAGCATTTT CASSLAVGEGPQHF TRBV7-9*01 TRBJ1-5*01 18.0 392.0 CIVRVVCac?GTASNLTF_CASSLAVGEGPQHF 1 4264 BZLF1-190-197 EBV 0.83 2156 BZLF1-190-197 117 4147 10 EBV BZLF1 RAKFKQLL effector memory T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-B*08:01 B2M MHCI -10370 chip0423_629782 -3.27 13.15 Chip2 T1D_4 T1D TGTGCAATGAGCGGGTCTAACTTTGGACATGAGAAATTAACCTTT CAMSGSNFGHEKLTF TRAV12-3*01 TRAJ48*01 70.0 1959.0 TGCATCCTGAGAGACGAATGGGCTAACCAGGGAGGAAAGCTTATCTTC CILRDEWANQGGKLIF TRAV26-2*01 TRAJ23*01 62.0 1569.0 0.33 TGTGCCAGCGGAGGGGAGGGGGACGATGTGAGCTCTGGAAACACCATATATTTT CASGGEGDDVSSGNTIYF TRBV12-3*01,TRBV12-4*01 TRBJ1-3*01 74.0 2006.0 CAMSGSNFGHEKLTF_CASGGEGDDVSSGNTIYF 1 4198 PGT-178 PGT 0.62 1480 NEG 97 4101 1 HomoSapiens PGT LLAGIGTVPI Naive T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*02:01 B2M MHCI -10371 chip0423_571007 16.26 10.74 Chip2 healthy_3 healthy TGTGCCAGCAGTGGTACACCCTTCTCCTACGAGCAGTACTTC CASSGTPFSYEQYF TRBV6-1*01 TRBJ2-7*01 19.0 603.0 _CASSGTPFSYEQYF 2 2148 GAD65-114-122 GAD65 0.75 63 NEG 97 2051 12 HomoSapiens GAD65 VMNILLQYV effector T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*02:01 B2M MHCI -10372 chip0423_601266 15.75 10.53 Chip2 healthy_4 healthy CGTGCCAGTAGGGCTCTATTGGGCTCTGGAAACACCATATATTTT RASRALLGSGNTIYF TRBV19*01 TRBJ1-3*01 8.0 246.0 _RASRALLGSGNTIYF 1 3069 EBV-BRLF1 EBV 0.89 1264 NEG 106 2963 12 EBV BRLF1 YVLDHLIVV effector T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*02:01 B2M MHCI -10373 chip0423_591791 6.49 11.4 Chip2 T1D_4 T1D TGTGCCAGCTCGACAGGGTACTATGGCTACACCTTC CASSTGYYGYTF TRBV19*01 TRBJ1-2*01 28.0 1711.0 _CASSTGYYGYTF 2 8740 M1 FLU 0.64 1250 NEG 96 8644 7 InfluenzaA M1 GILGFVFTL transitional T cells between effector and memory populations PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*02:01 B2M MHCI -10374 chip0423_457629 -2.23 11.17 Chip2 T1D_4 T1D TGTGCCAGTAGTCCTCTGGGGGGGGCGGTTGAAGCTTTCTTT CASSPLGGAVEAFF TRBV19*01 TRBJ1-1*01 7.0 308.0 _CASSPLGGAVEAFF 1 5060 IAPP-STN-9 IAPP 0.62 48 NEG 93 4967 3 HomoSapiens IAPP STNVGSNTY Naive T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*01:01 B2M MHCI -10375 chip0423_204389 6.42 14.33 Chip2 healthy_3 healthy TGTGCCAGCAGCACCCCAGGATATACCTACGAGCAGTACTTC CASSTPGYTYEQYF TRBV11-2*01 TRBJ2-7*01 24.0 946.0 _CASSTPGYTYEQYF 1 4632 M1 FLU 0.57 1250 M1 99 4533 7 InfluenzaA M1 GILGFVFTL transitional T cells between effector and memory populations PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*02:01 B2M MHCI -10376 chip0423_187465 12.58 6.99 Chip2 T1D_6 T1D TGTGCCAGCAGCTTGGGACAGGCCTACGAGCAGTACTTC CASSLGQAYEQYF TRBV7-8*01 TRBJ2-7*01 12.0 848.0 _CASSLGQAYEQYF 175 3725 EBNA3A-193-201 EBV 0.76 1022 NEG 113 3612 10 EBV EBNA3A FLRGRAYGL effector memory T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-B*08:01 B2M MHCI -10377 chip0423_785846 -1.97 12.02 Chip2 healthy_4 healthy TGTGCTGTTCCTTATTCAGGAGGAGGTGCTGACGGACTCACCTTT CAVPYSGGGADGLTF TRAV41*01 TRAJ45*01 1.0 60.0 TGTGCCAGTCGCTGGTGGAGCAATCAGCCCCAGCATTTT CASRWWSNQPQHF TRBV2*01 TRBJ1-5*01 10.0 882.0 CAVPYSGGGADGLTF_CASRWWSNQPQHF 1 4723 gp160-586-593 HIV 1.0 30 NEG 109 4614 4 HIV-1 gp160 YLKDQQLL Naive T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-B*08:01 B2M MHCI -10378 chip0423_646229 0.33 8.69 Chip2 T1D_6 T1D TGTGCCCTGCTGGGAGGAAGCTACATACCTACATTT CALLGGSYIPTF TRAV12-2*01 TRAJ6*01 50.0 5032.0 TGTGCCAGCACCAAGACAGGGGGCGGGTACGAGCAGTACTTC CASTKTGGGYEQYF TRBV6-1*01 TRBJ2-7*01 70.0 2580.0 CALLGGSYIPTF_CASTKTGGGYEQYF 1 6784 G6PC2-LTS-10 IGRP 0.76 59 G6PC2-LTS-10 111 6673 4 HomoSapiens G6PC2 LTSLTILQLY Naive T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*01:01 B2M MHCI -10379 chip0423_315536 9.89 9.69 Chip2 T1D_5 T1D TGTGCCTGGAGTGGTACCCGGGGAGGAGGAAAAACTGTTTTTT CAWSGTR??gEEEKLFF TRBV30*01 TRBJ1-4*01 21.0 792.0 _CAWSGTR??gEEEKLFF 1 4369 BZLF1-190-197 EBV 0.7 2156 NEG 114 4255 9 EBV BZLF1 RAKFKQLL effector memory T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-B*08:01 B2M MHCI -10380 chip0423_422327 12.27 7.81 Chip2 T1D_5 T1D CGTGCCGCTCTCGAAACCTCCTACGACAAGGTGATATTT RAALETSYDKVIF TRAV13-1*01 TRAJ50*01 17.0 1202.0 TGTGCCAGCAGTCCCGACGGATCCACCGGGGAGCTGTTTTTT CASSPDGSTGELFF TRBV12-3*01,TRBV12-4*01 TRBJ2-2*01 39.0 3010.0 RAALETSYDKVIF_CASSPDGSTGELFF 1 3074 BZLF1-190-197 EBV 0.62 2156 NEG 116 2958 10 EBV BZLF1 RAKFKQLL effector memory T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-B*08:01 B2M MHCI -10381 chip0423_237823 10.59 10.98 Chip2 healthy_3 healthy TGTGCCAGCAGCCAAGACCAAATAACGGAAGGGGGGAACTATGGCTACACCTTC CASSQDQITEGGNYGYTF TRBV3-1*01 TRBJ1-2*01 83.0 2695.0 _CASSQDQITEGGNYGYTF 2 3773 IGRP-265-273 IGRP 0.79 34 NEG 102 3671 9 HomoSapiens IGRP VLFGLGFAI effector memory T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*02:01 B2M MHCI -10382 chip0423_714462 9.42 8.29 Chip2 healthy_5 healthy TGTGCCACCTCTGACAGCTGGGGGAAATTGCAGTTT CATSDSWGKLQF TRAV12-2*01 TRAJ24*01 16.0 1982.0 TGTGCCAGCAGCCAAGATCTAAGGGGCGAGCAGTACTTC CASSQDLRGEQYF TRBV4-2*01 TRBJ2-7*01 22.0 1085.0 CATSDSWGKLQF_CASSQDLRGEQYF 2 3367 LMP2A-CPL EBV 1.0 44 NEG 108 3259 8 EBV LMP2A CPLSKILL effector memory T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-B*08:01 B2M MHCI -10383 chip0423_611910 -0.65 8.89 Chip2 healthy_3 healthy TGTGCCAGCAGTTTCAAGGGGGACATCACAGATACGCAGTATTTT CASSFKGDITDTQYF TRBV28*01 TRBJ2-3*01 62.0 2576.0 _CASSFKGDITDTQYF 1 8020 INS-6-16 INS 0.44 20 NEG 110 7910 4 HomoSapiens INS RLLPLLALLAL Naive T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*02:01 B2M MHCI -10384 chip0423_1983 4.9 11.79 Chip2 T1D_4 T1D TGTGCAGCAAGAACCTCCTACGACAAGGTGATATTT CAARTSYDKVIF TRAV13-1*01 TRAJ50*01 18.0 1611.0 TGTGCCAGCAGCCCGGGCACTTCACCCCTCCACTTT CASSPGTSPLHF TRBV4-2*01 TRBJ1-6*01 3.0 169.0 CAARTSYDKVIF_CASSPGTSPLHF 2 5318 GFAP-143-151 GFAP 0.9 5 GFAP-143-151 104 5214 6 HomoSapiens GFAP NLAQDLATV central memory T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*02:01 B2M MHCI -10385 chip0423_675509 10.93 10.67 Chip2 healthy_4 healthy TGTGCCAGCAGCTTAATCACCTACGAGCAGTACTTC CASSLITYEQYF TRBV7-9*01 TRBJ2-7*01 15.0 1156.0 _CASSLITYEQYF 1 4711 BZLF1-190-197 EBV 0.82 2156 NEG 104 4607 9 EBV BZLF1 RAKFKQLL effector memory T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-B*08:01 B2M MHCI -10386 chip0423_248358 -3.63 10.59 Chip2 healthy_3 healthy TGTGCCAGCAGTGCCCTCCGCACACAGGGGCTACAAGAGACCCAGTACTTC CASSALRTQGLQETQYF TRBV28*01 TRBJ2-5*01 43.0 1749.0 _CASSALRTQGLQETQYF 1 6016 PGT-178 PGT 0.81 1480 NEG 99 5917 2 HomoSapiens PGT LLAGIGTVPI Naive T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*02:01 B2M MHCI -10387 chip0423_247929 10.67 9.24 Chip2 healthy_4 healthy TGTGCAATGGCGAATAGTGGAGGTAGCAACTATAAACTGACATTT CAMANSGGSNYKLTF TRAV12-3*01 TRAJ53*01 53.0 1975.0 TGCAGCGTTGGTTCAGGGGACTACGAGCAGTACTTC CSVGSGDYEQYF TRBV29-1*01 TRBJ2-7*01 72.0 6261.0 CAMANSGGSNYKLTF_CSVGSGDYEQYF 2 4681 BZLF1-190-197 EBV 0.91 2156 NEG 118 4563 9 EBV BZLF1 RAKFKQLL effector memory T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-B*08:01 B2M MHCI -10388 chip0423_247598 13.6 13.57 Chip2 T1D_5 T1D TGCGCCAGCAGCCAAGACGGCACAGGGATTAACACTGAAGCTTTCTTT CASSQDGTGINTEAFF TRBV4-1*01 TRBJ1-1*01 17.0 390.0 _CASSQDGTGINTEAFF 2 1633 NP44-52 FLU 0.95 474 NP44-52 98 1535 11 InfluenzaA NP CTELKLSDY effector T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*01:01 B2M MHCI -10389 chip0423_336809 13.24 8.86 Chip2 T1D_5 T1D TGTGCAATGAGAGAGGGTGAAGGACAAGGCTTCTCCTTTATCTTT CAMREGEGQGFSFIF TRAV14/DV4*01 TRAJ11*01 32.0 1959.0 CAMREGEGQGFSFIF_ 1 2926 BZLF1-190-197 EBV 0.67 2156 BZLF1-190-197 119 2807 10 EBV BZLF1 RAKFKQLL effector memory T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-B*08:01 B2M MHCI -10390 chip0423_308847 -0.45 9.67 Chip2 healthy_3 healthy TGTGCCAGCAGTTATGAAGAGCGGGGGGCCAGCTCCTACAATGAGCAGTTCTTC CASSYEERGASSYNEQFF TRBV6-2*01,TRBV6-3*01 TRBJ2-1*01 15.0 759.0 _CASSYEERGASSYNEQFF 1 4859 PGT-178 PGT 0.5 1480 NEG 101 4758 4 HomoSapiens PGT LLAGIGTVPI Naive T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*02:01 B2M MHCI -10391 chip0423_263585 8.75 10.06 Chip2 healthy_3 healthy CGTGCTTCGAGCAGCAGTGCTTCCAAGATCCTCTTT RASSSSASKILF TRAV9-2*01 TRAJ3*01 5.0 174.0 TGTGCCAGCAGCGGACCCCACGCTAACTATGGCTACACCTTC CASSGPHANYGYTF TRBV9*01 TRBJ1-2*01 16.0 1152.0 RASSSSASKILF_CASSGPHANYGYTF 1 5602 NP44-52 FLU 0.82 474 NP44-52 99 5503 8 InfluenzaA NP CTELKLSDY effector memory T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*01:01 B2M MHCI -10392 chip0423_518420 8.94 12.08 Chip2 healthy_4 healthy TGTGCTGTGGAGAAGAAGAACACCGACAAGCTCATCTTT CAVEKKNTDKLIF TRAV12-2*01,TRAV21*01 TRAJ34*01 22.0 1253.0 CAVEKKNTDKLIF_ 5 3188 BZLF1-190-197 EBV 0.8 2156 NEG 100 3088 7 EBV BZLF1 RAKFKQLL transitional T cells between effector and memory populations PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-B*08:01 B2M MHCI -10393 chip0423_803017 10.37 10.52 Chip2 T1D_5 T1D TGTGCAGCAAAGGAAACCTCCTACGACAAGGTGATATTT CAAKETSYDKVIF TRAV13-1*01 TRAJ50*01 15.0 618.0 TGCATCCTGTGGGACGTTCTGTGGTGCTGGCAACAACCGTAAGCTGATTTGG CILWDVLWtg??ctGNNRKLIW TRAV26-2*01 TRAJ38*01 47.0 1445.0 0.67 TGTGCCAGCAGCTCGCTCGGGACAGGGGAACCGGTGAAGACTGAAGCTTTCTTT CASSSLGTGEPVKTEAFF TRBV11-1*01 TRBJ1-1*01 27.0 735.0 CAAKETSYDKVIF_CASSSLGTGEPVKTEAFF 2 5224 BZLF1-190-197 EBV 0.82 2156 NEG 111 5113 9 EBV BZLF1 RAKFKQLL effector memory T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-B*08:01 B2M MHCI -10394 chip0423_738333 8.98 8.01 Chip2 healthy_4 healthy TGCAGCGTCGGAAGCGGGGAAGGCTACGAGCAGTACTTC CSVGSGEGYEQYF TRBV29-1*01 TRBJ2-7*01 115.0 7597.0 _CSVGSGEGYEQYF 5 3801 BZLF1-190-197 EBV 0.89 2156 NEG 102 3699 8 EBV BZLF1 RAKFKQLL effector memory T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-B*08:01 B2M MHCI -10395 chip0423_703908 12.39 10.61 Chip2 T1D_4 T1D TGCATCGTCAGAGAGGGAGGAGGTGCTGACGGACTCCCCTTT CIVREGGGADGLPF TRAV26-1*01 TRAJ45*01 21.0 971.0 TGTGCCAGCAGCTTAGCGGTCGGAGAAGGGCCCCAGCATTTT CASSLAVGEGPQHF TRBV7-9*01 TRBJ1-5*01 36.0 1253.0 CIVREGGGADGLPF_CASSLAVGEGPQHF 21 4454 BZLF1-190-197 EBV 0.87 2156 BZLF1-190-197 121 4333 9 EBV BZLF1 RAKFKQLL effector memory T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-B*08:01 B2M MHCI -10396 chip0423_526178 -4.34 8.79 Chip2 T1D_4 T1D TGCATCCTTATCAGGACGGATCTAATAAGCTGGTCTTT CILIRTg?aSNKLVF TRAV26-2*01 TRAJ57*01 14.0 1212.0 TGCGCCAGCAGCCAAGTACTTGGACTAGCAACTGAGCAGTTCTTC CASSQVLGLATEQFF TRBV4-3*01 TRBJ2-1*01 82.0 3998.0 CILIRTg?aSNKLVF_CASSQVLGLATEQFF 1 4657 PGT-178 PGT 0.52 1480 PGT-178 115 4542 2 HomoSapiens PGT LLAGIGTVPI Naive T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*02:01 B2M MHCI -10397 chip0423_762991 10.86 11.24 Chip2 healthy_3 healthy TGTGCCGTGAAGGAGGGAGGAAAGCTTATCTTC CAVKEGGKLIF TRAV8-1*01 TRAJ23*01 18.0 2149.0 CAVKEGGKLIF_ 5 4629 EBV-BRLF1 EBV 0.57 1264 NEG 89 4540 9 EBV BRLF1 YVLDHLIVV effector memory T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*02:01 B2M MHCI -10398 chip0423_683413 11.78 12.04 Chip2 T1D_6 T1D TGCATCCTCCCACTTGCTGGTGGTACTAGCTATGGAAAGCTGACATTT CILPLAGGTSYGKLTF TRAV26-2*01 TRAJ52*01 50.0 2003.0 TGTGCCAGCAGTCAAGACCCGCGGACACAGGGTGTTCAGCCCCAGCATTTT CASSQDPRTQGVQPQHF TRBV6-2*01,TRBV6-3*01 TRBJ1-5*01 2.0 47.0 CILPLAGGTSYGKLTF_CASSQDPRTQGVQPQHF 1 3376 EBNA3A-193-201 EBV 0.78 1022 NEG 126 3250 11 EBV EBNA3A FLRGRAYGL effector T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-B*08:01 B2M MHCI -10399 chip0423_602505 11.02 12.62 Chip2 T1D_5 T1D TGTGCCAGCAGCGTAGGTCGTGAGATCGGGCCCATCGAGCAGTTCTTC CASSVGREIGPIEQFF TRBV7-8*01 TRBJ2-1*01 8.0 435.0 _CASSVGREIGPIEQFF 1 2450 BZLF1-190-197 EBV 1.0 2156 NEG 98 2352 11 EBV BZLF1 RAKFKQLL effector T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-B*08:01 B2M MHCI -10400 chip0423_92958 9.89 10.79 Chip2 T1D_4 T1D TGTGCTGTGCGTGATGGAGAAGGCGCCCAGCAGCTGGTATTC CAVRDGEGAQQLVF TRAV8-6*01 TRAJ54*01 17.0 513.0 TGTGCCAGCAGCTTAACGGTTCTGGCAGGTCCAAACACTGAAGCTTTCTTT CASSLTVLAGPNTEAFF TRBV7-3*01 TRBJ1-1*01 68.0 1795.0 CAVRDGEGAQQLVF_CASSLTVLAGPNTEAFF 1 4192 BZLF1-190-197 EBV 0.95 2156 BZLF1-190-197 124 4068 9 EBV BZLF1 RAKFKQLL effector memory T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-B*08:01 B2M MHCI -10401 chip0423_575293 9.61 13.21 Chip2 healthy_4 healthy TGTGCCAGCAGCCACGAACTAGCGGTCTACGAGCAGTACTTC CASSHELAVYEQYF TRBV6-2*01,TRBV6-3*01 TRBJ2-7*01 36.0 1154.0 _CASSHELAVYEQYF 1 2366 GFAP-214-222 GFAP 0.91 6 NEG 89 2277 6 HomoSapiens GFAP QLARQQVHV central memory T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*02:01 B2M MHCI -10402 chip0423_6928 -4.37 9.33 Chip2 healthy_3 healthy TGTCCCCCTGCGAGAGCTCTAGCCCCCCCGGCACACTAATCTTT CPPARALg?cPPGTLIF TRAV8-6*01 TRAJ37*01 34.0 1363.0 TGTGCCTGGAGCCACGGGACAGGCCGCGAAGCTTTCTTT CAWSHGTGREAFF TRBV30*01 TRBJ1-1*01 63.0 3356.0 CPPARALg?cPPGTLIF_CAWSHGTGREAFF 1 6874 CVB3-P3A CVB 0.56 77 NEG 100 6774 4 CoxsackievirusB P3A GIIYIIYKL Naive T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*02:01 B2M MHCI -10403 chip0423_809717 12.54 13.03 Chip2 T1D_4 T1D TGTGCCAGCAGCTTAGCGGTCGGAGAAGGGCCCCAGCATTTT CASSLAVGEGPQHF TRBV7-9*01 TRBJ1-5*01 6.0 164.0 _CASSLAVGEGPQHF 113 2258 BZLF1-190-197 EBV 0.61 2156 NEG 150 2108 11 EBV BZLF1 RAKFKQLL effector T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-B*08:01 B2M MHCI -10404 chip0423_710245 7.96 13.5 Chip2 healthy_3 healthy TGTGCCAGCAGCCCAAAGACAGGAGCAGGACTAGCGGGTGATGAGCAGTTCTTC CASSPKTGAGLAGDEQFF TRBV11-1*01 TRBJ2-1*01 25.0 661.0 _CASSPKTGAGLAGDEQFF 2 3480 NP44-52 FLU 0.69 474 NP44-52 98 3382 7 InfluenzaA NP CTELKLSDY transitional T cells between effector and memory populations PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*01:01 B2M MHCI -10405 chip0423_402408 -4.11 9.65 Chip2 T1D_6 T1D TGTGCAATGACCCGTCCTAACTTTGGCTCTGGGGACTTCCCCTTT CAMTRPNFGSGDFPF TRAV12-3*01 TRAJ48*01 14.0 568.0 CAMTRPNFGSGDFPF_ 1 4918 PGT-178 PGT 0.65 1480 PGT-178 127 4791 2 HomoSapiens PGT LLAGIGTVPI Naive T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*02:01 B2M MHCI -10406 chip0423_627816 13.34 9.49 Chip2 healthy_4 healthy TGTGCAATGAGAGAGGAATCAGGATACAGCACCCTCACCTTT CAMREESGYSTLTF TRAV14/DV4*01 TRAJ11*01 39.0 1909.0 TGCAGTGCCCGGGACAGGGGGTCGGAGAACACCGGGGAGCTGTTTTTT CSARDRGSENTGELFF TRBV20-1*01 TRBJ2-2*01 46.0 1708.0 CAMREESGYSTLTF_CSARDRGSENTGELFF 1 2762 BZLF1-190-197 EBV 0.73 2156 NEG 91 2671 10 EBV BZLF1 RAKFKQLL effector memory T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-B*08:01 B2M MHCI -10407 chip0423_551384 13.7 13.52 Chip2 T1D_5 T1D TGTGCCAGCAGTTTTACAGGTAGCTCTGGAAACACCATATATTTT CASSFTGSSGNTIYF TRBV12-3*01,TRBV12-4*01 TRBJ1-3*01 26.0 992.0 _CASSFTGSSGNTIYF 7 2100 BZLF1-190-197 EBV 0.43 2156 NEG 101 1999 11 EBV BZLF1 RAKFKQLL effector T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-B*08:01 B2M MHCI -10408 chip0423_636281 -3.55 13.26 Chip2 T1D_6 T1D TGTGCTAGTGGTTTGGTACGGTATTCCACGACTAGAGAAACCGGGGAGCTGTTTTTT CASGLVRYSTTRETGELFF TRBV12-5*01 TRBJ2-2*01 61.0 1612.0 _CASGLVRYSTTRETGELFF 1 4070 LMP2A-CPL EBV 0.41 44 NEG 96 3974 1 EBV LMP2A CPLSKILL Naive T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-B*08:01 B2M MHCI -10409 chip0423_278871 15.07 11.46 Chip2 healthy_4 healthy TGTGCTGTGGCGCCGCCGCCCCCCGCCACGCTCATCTTT CAVAPPPPATLIF TRAV21*01 TRAJ34*01 9.0 284.0 CAVAPPPPATLIF_ 1 3027 BZLF1-190-197 EBV 1.0 2156 NEG 99 2928 12 EBV BZLF1 RAKFKQLL effector T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-B*08:01 B2M MHCI -10410 chip0423_327488 11.18 9.31 Chip2 T1D_6 T1D TGTGCCAGCAGCTTGGGACAGGCCTACGAGCAGTACTTC CASSLGQAYEQYF TRBV7-8*01 TRBJ2-7*01 8.0 471.0 _CASSLGQAYEQYF 175 3217 EBNA3A-193-201 EBV 0.88 1022 EBNA3A-193-201 124 3093 11 EBV EBNA3A FLRGRAYGL effector T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-B*08:01 B2M MHCI -10411 chip0423_298509 6.93 11.14 Chip2 healthy_3 healthy TGCATCGTCATAGTTGCCAGGGGGGAACGCTTATCTTC CIVIVAa?gGGTLIF TRAV26-1*01 TRAJ23*01 27.0 2075.0 TGTGCCAGTAGCGATCTTAGACAGACAAGCTCCTACAATGAGCAGTTCTTC CASSDLRQTSSYNEQFF TRBV19*01 TRBJ2-1*01 29.0 785.0 CIVIVAa?gGGTLIF_CASSDLRQTSSYNEQFF 1 5216 NP44-52 FLU 0.5 474 NP44-52 89 5127 7 InfluenzaA NP CTELKLSDY transitional T cells between effector and memory populations PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*01:01 B2M MHCI -10412 chip0423_274822 10.8 9.04 Chip2 healthy_4 healthy TGTGCCAGCAGCTTAAACGTCGGGGAGGGCGCAGGAAACACCATATATTTT CASSLNVGEGAGNTIYF TRBV7-6*01 TRBJ1-3*01 7.0 97.0 _CASSLNVGEGAGNTIYF 9 5319 BZLF1-190-197 EBV 0.75 2156 NEG 97 5222 10 EBV BZLF1 RAKFKQLL effector memory T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-B*08:01 B2M MHCI -10413 chip0423_192425 8.31 13.1 Chip2 T1D_4 T1D TGTGCTCTGATGGAAACCTCCTACGACAAGGTGGTATTT CALMETSYDKVVF TRAV9-2*01 TRAJ50*01 21.0 1054.0 TGTGCCAGTATCGCGGGCAGAGAAGAAGCTTTCTTT CASIAGREEAFF TRBV19*01 TRBJ1-1*01 2.0 58.0 CALMETSYDKVVF_CASIAGREEAFF 1 3464 BZLF1-190-197 EBV 0.71 2156 NEG 96 3368 7 EBV BZLF1 RAKFKQLL transitional T cells between effector and memory populations PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-B*08:01 B2M MHCI -10414 chip0423_436803 11.09 9.18 Chip2 T1D_5 T1D TGTGCAGCAAGTGAAACCTCCTACGACAAGGTGATATTT CAASETSYDKVIF TRAV13-1*01 TRAJ50*01 2.0 72.0 CAASETSYDKVIF_ 51 3164 BZLF1-190-197 EBV 0.43 2156 NEG 107 3057 9 EBV BZLF1 RAKFKQLL effector memory T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-B*08:01 B2M MHCI -10415 chip0423_174481 -3.05 11.09 Chip2 T1D_6 T1D _ 6746 5303 HCVNS4B-1807-1816 HCV 1.0 74 NEG 93 5210 4 HCV NS4B LLFNILGGWV Naive T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*02:01 B2M MHCI -10416 chip0423_303535 9.55 8.26 Chip2 healthy_4 healthy TGTGCTGTGGAGGATCAAGGGAGATCTTATAACACCGACAAGCTCATCTTT CAVEDQGRSYNTDKLIF TRAV2*01 TRAJ34*01 95.0 1913.0 TGTGCCAGCAGCTTAAACGTCGGGGAGGGCGCAGGAAACACCATATATTTT CASSLNVGEGAGNTIYF TRBV7-6*01 TRBJ1-3*01 7.0 203.0 CAVEDQGRSYNTDKLIF_CASSLNVGEGAGNTIYF 10 5303 BZLF1-190-197 EBV 0.8 2156 NEG 111 5192 8 EBV BZLF1 RAKFKQLL effector memory T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-B*08:01 B2M MHCI -10417 chip0423_400603 -3.51 12.94 Chip2 T1D_6 T1D TGTGCAGCTCTCGAAACCTCCTACGACAAGGTGATATTT CAALETSYDKVIF TRAV13-1*01 TRAJ50*01 1.0 52.0 TGTGCCAGCAGCTTGCCGACTAGCGGGGGTTACCTATCCTACGAGCAGTACTTC CASSLPTSGGYLSYEQYF TRBV7-8*01 TRBJ2-7*01 8.0 495.0 CAALETSYDKVIF_CASSLPTSGGYLSYEQYF 1 3231 EBV-LMP2A EBV 0.53 700 NEG 94 3137 1 EBV LMP2A CLGGLLTMV Naive T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*02:01 B2M MHCI -10418 chip0423_687558 11.47 8.89 Chip2 healthy_4 healthy TGCGCCAGCAGCCAAGCCCCGGGACAGCGCACCGGGGAGCTGTTTTTT CASSQAPGQRTGELFF TRBV4-1*01 TRBJ2-2*01 16.0 741.0 _CASSQAPGQRTGELFF 9 3708 BZLF1-190-197 EBV 1.0 2156 NEG 114 3594 10 EBV BZLF1 RAKFKQLL effector memory T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-B*08:01 B2M MHCI -10419 chip0423_546572 7.7 10.8 Chip2 T1D_5 T1D _ 6746 5390 BZLF1-190-197 EBV 0.61 2156 NEG 116 5274 7 EBV BZLF1 RAKFKQLL transitional T cells between effector and memory populations PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-B*08:01 B2M MHCI -10420 chip0423_394124 5.96 13.74 Chip2 healthy_3 healthy TGCAGTGTAGGGGACAGGGCATCCTATGGCTACACCTTC CSVGDRASYGYTF TRBV20-1*01 TRBJ1-2*01 23.0 1854.0 _CSVGDRASYGYTF 1 4964 NP44-52 FLU 0.45 474 NP44-52 89 4875 7 InfluenzaA NP CTELKLSDY transitional T cells between effector and memory populations PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*01:01 B2M MHCI -10421 chip0423_251646 9.44 8.83 Chip2 T1D_4 T1D CGCATCGTCAAAGAGGGTGGCGGTGCTGGCGGGTTCCGCTTT RIVKEGGGAGGFRF TRAV26-1*01 TRAJ45*01 12.0 380.0 TGTGCCAGCAGCTTAGCGGTCGGAGAAGGGCCCCAGCATTTT CASSLAVGEGPQHF TRBV7-9*01 TRBJ1-5*01 30.0 747.0 RIVKEGGGAGGFRF_CASSLAVGEGPQHF 1 4811 BZLF1-190-197 EBV 0.9 2156 BZLF1-190-197 108 4703 8 EBV BZLF1 RAKFKQLL effector memory T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-B*08:01 B2M MHCI -10422 chip0423_71929 -2.58 10.61 Chip2 T1D_4 T1D TGTGCCGTATCGAACACCGGTAACCAGTTCTATTTT CAVSNTGNQFYF TRAV12-2*01 TRAJ49*01 19.0 2007.0 TGTGCCAGCAGTCTCCTCGGGACAGGGGGGCGCGGCTACACCTTC CASSLLGTGGRGYTF TRBV28*01 TRBJ1-2*01 5.0 211.0 CAVSNTGNQFYF_CASSLLGTGGRGYTF 1 4639 PGT-178 PGT 0.68 1480 PGT-178 122 4517 3 HomoSapiens PGT LLAGIGTVPI Naive T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*02:01 B2M MHCI -10423 chip0423_672137 4.89 10.9 Chip2 healthy_4 healthy _ 6746 3184 M1 FLU 1.0 1250 NEG 104 3080 6 InfluenzaA M1 GILGFVFTL central memory T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*02:01 B2M MHCI -10424 chip0423_256615 15.81 10.3 Chip2 T1D_6 T1D _ 6746 3678 NP140-148 FLU 0.45 102 NEG 104 3574 12 InfluenzaA NP HSNLNDATY effector T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*01:01 B2M MHCI -10425 chip0423_174455 14.02 10.62 Chip2 T1D_5 T1D TGTGCCAGCAGCTTAGCAGGGGCCCTTTGAAGCTTTCTTT CASSLAgg??ggPFEAFF TRBV7-9*01 TRBJ1-1*01 11.0 711.0 _CASSLAgg??ggPFEAFF 1 3238 BZLF1-190-197 EBV 0.5 2156 NEG 118 3120 12 EBV BZLF1 RAKFKQLL effector T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-B*08:01 B2M MHCI -10426 chip0423_742740 -0.73 4.74 Chip2 T1D_4 T1D TGTGCCAGCTCTGCGGCACTTTCCTACGAGCAGTACTTC CASSAALSYEQYF TRBV2*01 TRBJ2-7*01 12.0 679.0 _CASSAALSYEQYF 1 5736 MART1-ALA MART1 0.69 269 NEG 99 5637 5 HomoSapiens MART1 ALAGIGILTV natural killer-like T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*02:01 B2M MHCI -10427 chip0423_733675 5.16 9.45 Chip2 T1D_4 T1D TGTGCCAGCAGCCAAGGACAGGCCTACGAGCAGTACTTC CASSQGQAYEQYF TRBV7-8*01 TRBJ2-7*01 19.0 1089.0 _CASSQGQAYEQYF 3 5023 EBNA3A-193-201 EBV 0.76 1022 EBNA3A-193-201 117 4906 6 EBV EBNA3A FLRGRAYGL central memory T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-B*08:01 B2M MHCI -10428 chip0423_473005 -4.65 9.52 Chip2 healthy_3 healthy _ 6746 6178 PGT-178 PGT 0.59 1480 NEG 88 6090 2 HomoSapiens PGT LLAGIGTVPI Naive T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*02:01 B2M MHCI -10429 chip0423_414288 7.42 12.03 Chip2 healthy_3 healthy TGTGCTGTTGAAGTCGACAAGCTCATCTTT CAVEVDKLIF TRAV41*01 TRAJ34*01 2.0 137.0 TGTGCCAGCAGCTTGTGGTACAGGGTGGAGACCCAGTACTTC CASSLWYRVETQYF TRBV5-6*01 TRBJ2-5*01 11.0 469.0 CAVEVDKLIF_CASSLWYRVETQYF 3 6069 NP44-52 FLU 0.87 474 NP44-52 100 5969 7 InfluenzaA NP CTELKLSDY transitional T cells between effector and memory populations PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*01:01 B2M MHCI -10430 chip0423_398822 -3.64 11.24 Chip2 healthy_4 healthy _ 6746 4025 HCVNS3-1073-1081 HCV 1.0 36 NEG 108 3917 1 HCV NS3 CINGVCWTV Naive T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*02:01 B2M MHCI -10431 chip0423_51486 6.37 12.53 Chip2 healthy_3 healthy TGCGCTGATTACAGCAGTGCTTCCACGCTAATCTTT CADYSSASTLIF TRAV1-1*01 TRAJ3*01 8.0 692.0 TGCGCCAGCAGCCAAGATGGACTAGCGGCAACTAGCACAGATACGCAGTATTTT CASSQDGLAATSTDTQYF TRBV4-1*01 TRBJ2-3*01 33.0 1264.0 CADYSSASTLIF_CASSQDGLAATSTDTQYF 1 4351 NP44-52 FLU 0.57 474 NEG 99 4252 7 InfluenzaA NP CTELKLSDY transitional T cells between effector and memory populations PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*01:01 B2M MHCI -10432 chip0423_869090 -3.24 11.61 Chip2 healthy_4 healthy _ 6746 4029 GAD2-MMI-8 GAD65 0.62 40 NEG 96 3933 1 HomoSapiens GAD2 MMIARFKM Naive T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-B*08:01 B2M MHCI -10433 chip0423_809572 -4.16 9.84 Chip2 healthy_4 healthy TGTGCCGGCAGCCCGGGGGGGAGTCAGCCCCAGCATTTT CAGSPGGSQPQHF TRBV6-1*01 TRBJ1-5*01 21.0 550.0 _CAGSPGGSQPQHF 1 5594 INS-6-16 INS 0.62 20 NEG 83 5511 2 HomoSapiens INS RLLPLLALLAL Naive T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*02:01 B2M MHCI -10434 chip0423_742214 4.74 10.35 Chip2 T1D_4 T1D TGTGCTCTCACTACCTATGGTCAGAATTTTGTCTTT CALTTYGQNFVF TRAV38-1*01 TRAJ26*01 7.0 692.0 TGCAGTGCCTCTCGTGACTCCTACGAGCAGTACTTC CSASRDSYEQYF TRBV20-1*01 TRBJ2-7*01 7.0 594.0 CALTTYGQNFVF_CSASRDSYEQYF 15 4108 EBV-LMP1-1 EBV 0.73 237 EBV-LMP1-1 99 4009 6 EBV LMP1 YLLEMLWRL central memory T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*02:01 B2M MHCI -10435 chip0423_382341 11.15 11.22 Chip2 healthy_3 healthy TGTGCCAGCTGCCAGTTGTCAGTTCCGCAGTATTTT CASCQLSVPQYF TRBV6-2*01,TRBV6-3*01 TRBJ2-3*01 2.0 98.0 _CASCQLSVPQYF 1 3237 EBV-BRLF1 EBV 0.65 1264 NEG 92 3145 9 EBV BRLF1 YVLDHLIVV effector memory T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*02:01 B2M MHCI -10436 chip0423_296857 9.87 9.64 Chip2 healthy_4 healthy TGCAGTGCTAGAGATAGAGGGTCGGAGAACACCGGGGAGCTGTTTTTT CSARDRGSENTGELFF TRBV20-1*01 TRBJ2-2*01 51.0 1755.0 _CSARDRGSENTGELFF 3 3900 BZLF1-190-197 EBV 0.86 2156 NEG 94 3806 9 EBV BZLF1 RAKFKQLL effector memory T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-B*08:01 B2M MHCI -10437 chip0423_599971 -2.87 9.27 Chip2 healthy_3 healthy TGTGCCGTCGGTGCTTCCGAGATACTCTTT CAVGASEILF TRAV12-2*01 TRAJ3*01 5.0 386.0 CAVGASEILF_ 1 5038 MART1-A28L MART1 0.45 84 NEG 83 4955 2 HomoSapiens MART1 ALGIGILTV Naive T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*02:01 B2M MHCI -10438 chip0423_580306 11.25 11.55 Chip2 healthy_4 healthy TGTGCTCTAAGGGGCGTGGGGTGTGGGGACCGGCTGGTCTTT CALRGVGCGDRLVF TRAV16*01 TRAJ47*01 38.0 1963.0 CALRGVGCGDRLVF_ 1 2975 BZLF1-190-197 EBV 1.0 2156 NEG 100 2875 9 EBV BZLF1 RAKFKQLL effector memory T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-B*08:01 B2M MHCI -10439 chip0423_166830 10.12 6.83 Chip2 T1D_5 T1D TGTGCCAGCAGCTTAGGACGTGAAATCGGGCCCATCGAGCAGTTCTTC CASSLGREIGPIEQFF TRBV7-8*01 TRBJ2-1*01 15.0 569.0 _CASSLGREIGPIEQFF 4 6867 BZLF1-190-197 EBV 0.77 2156 BZLF1-190-197 104 6763 10 EBV BZLF1 RAKFKQLL effector memory T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-B*08:01 B2M MHCI -10440 chip0423_560954 -3.34 11.24 Chip2 healthy_4 healthy TGTGCCTGTGAAGTGCCTCGGGGAGCTTTCTTT CACEVPRGAFF TRBV30*01 TRBJ1-1*01 1.0 40.0 _CACEVPRGAFF 1 4202 PGT-178 PGT 0.69 1480 PGT-178 89 4113 1 HomoSapiens PGT LLAGIGTVPI Naive T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*02:01 B2M MHCI -10441 chip0423_268107 -3.05 9.1 Chip2 healthy_3 healthy TTCTTCGTGACCGCTTACCAGGCAGGACCTGCCCTGATTTTT FFVTAYQAGPALIF TRAV4*01 TRAJ15*01 4.0 287.0 TGCCTCGAGGGTGCTAACCTTGCATGAGATGCTCTGATTTTT CLEGANLA*DALIF TRAV4*01 TRAJ15*01 3.0 12.0 0.33 FFVTAYQAGPALIF_ 1 7276 HCVNS3-1073-1081 HCV 0.83 36 NEG 100 7176 2 HCV NS3 CINGVCWTV Naive T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*02:01 B2M MHCI -10442 chip0423_296624 6.24 9.86 Chip2 healthy_3 healthy TGTGCCGCCATGGAACTTTACTGCTGGCAACAACCGTAATCTGATTTGG CAAMELYC??tGNNRNLIW TRAV8-1*01 TRAJ38*01 22.0 758.0 TGTGCCAGCAGCCAACCGGGACGGACAGACGAGCAGTACTTC CASSQPGRTDEQYF TRBV12-3*01,TRBV12-4*01 TRBJ2-7*01 24.0 1189.0 CAAMELYC??tGNNRNLIW_CASSQPGRTDEQYF 1 7435 ZNT8-107-115 ZNT8 0.5 10 NEG 84 7351 6 HomoSapiens ZNT8 LLIDLTSFL central memory T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*02:01 B2M MHCI -10443 chip0423_757925 11.31 11.7 Chip2 healthy_3 healthy TGTGCCACCAGTGTTCTAGGGAACGAAAATGAGCAGTTCTTC CATSVLGNENEQFF TRBV24-1*01 TRBJ2-1*01 15.0 800.0 _CATSVLGNENEQFF 1 3138 EBV-BRLF1 EBV 0.58 1264 EBV-BRLF1 95 3043 9 EBV BRLF1 YVLDHLIVV effector memory T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*02:01 B2M MHCI -10444 chip0423_654717 -3.89 12.21 Chip2 healthy_3 healthy TGTGCTGTCAATGGAAACAAACTGGTCTTT CAVNGNKLVF TRAV41*01 TRAJ47*01 6.0 281.0 CAVNGNKLVF_ 1 2924 NP140-148 FLU 0.89 102 NP140-148 89 2835 1 InfluenzaA NP HSNLNDATY Naive T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*01:01 B2M MHCI -10445 chip0423_442689 -1.09 7.44 Chip2 healthy_4 healthy TGTGCCAGCAGTGAGGCAGTAAATAGCAATCAGCCCCAGCATTTT CASSEAVNSNQPQHF TRBV2*01 TRBJ1-5*01 11.0 236.0 _CASSEAVNSNQPQHF 1 5746 HCVNS3-1073-1081 HCV 1.0 36 NEG 115 5631 3 HCV NS3 CINGVCWTV Naive T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*02:01 B2M MHCI -10446 chip0423_573700 13.63 13.08 Chip2 T1D_5 T1D TGTGCAGCCGGGGAAACCTCCTACGACAAGGTGATATTT CAAGETSYDKVIF TRAV13-1*01 TRAJ50*01 19.0 651.0 CAAGETSYDKVIF_ 3 2151 BZLF1-190-197 EBV 0.5 2156 NEG 100 2051 11 EBV BZLF1 RAKFKQLL effector T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-B*08:01 B2M MHCI -10447 chip0423_534155 -0.37 9.13 Chip2 T1D_6 T1D TGTGCTCTGAGTGAAACCAATGCAGGCAAATCAACCTTT CALSETNAGKSTF TRAV19*01 TRAJ27*01 2.0 154.0 CALSETNAGKSTF_ 1 6872 ZNT8-YAY-8 ZNT8 0.53 54 ZNT8-YAY-8 106 6766 4 HomoSapiens ZNT8 YAYAKWKL Naive T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-B*08:01 B2M MHCI -10448 chip0423_172575 -0.27 8.99 Chip2 healthy_4 healthy TGTGCCAGCAGCAGCGGACGGGTGAACACTGAAGCTTTCTTT CASSSGRVNTEAFF TRBV9*01 TRBJ1-1*01 1.0 14.0 _CASSSGRVNTEAFF 1 4985 PGT-178 PGT 0.64 1480 NEG 95 4890 4 HomoSapiens PGT LLAGIGTVPI Naive T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*02:01 B2M MHCI -10449 chip0423_145887 10.94 8.56 Chip2 healthy_4 healthy TGTGCTGTGGAGGATCAAGGGAGATCTTATAACACCGACAAGCTCATCTTT CAVEDQGRSYNTDKLIF TRAV2*01 TRAJ34*01 107.0 3942.0 CAVEDQGRSYNTDKLIF_ 15 5309 BZLF1-190-197 EBV 1.0 2156 NEG 96 5213 10 EBV BZLF1 RAKFKQLL effector memory T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-B*08:01 B2M MHCI -10450 chip0423_718069 5.2 9.56 Chip2 healthy_3 healthy _ 6746 5620 GAD2-STA-10 GAD65 0.93 7 GAD2-STA-10 89 5531 6 HomoSapiens GAD2 STANTNMFTY central memory T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*01:01 B2M MHCI -10451 chip0423_719130 12.54 6.95 Chip2 T1D_6 T1D TGCGCCAGCAGCTTGGGACAGGCCTACGAGCAGTACTTC CASSLGQAYEQYF TRBV7-8*01 TRBJ2-7*01 27.0 2090.0 _CASSLGQAYEQYF 175 4910 EBNA3A-193-201 EBV 0.75 1022 EBNA3A-193-201 112 4798 10 EBV EBNA3A FLRGRAYGL effector memory T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-B*08:01 B2M MHCI -10452 chip0423_821750 -2.4 7.43 Chip2 T1D_4 T1D _ 6746 5809 PGT-178 PGT 0.68 1480 PGT-178 96 5713 3 HomoSapiens PGT LLAGIGTVPI Naive T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*02:01 B2M MHCI -10453 chip0423_97418 -2.44 15.27 Chip2 T1D_6 T1D TGTGCCAGCAGTTACGAAGCCGGGGCCTATGGCTACACCTTC CASSYEAGAYGYTF TRBV6-5*01 TRBJ1-2*01 5.0 104.0 _CASSYEAGAYGYTF 1 2361 MART1-A28L MART1 0.88 84 NEG 81 2280 1 HomoSapiens MART1 ALGIGILTV Naive T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*02:01 B2M MHCI -10454 chip0423_83059 -2.35 9.9 Chip2 T1D_5 T1D TGTGCAATGACAGAATATGGAAACAAACTGGTCTTT CAMTEYGNKLVF TRAV12-3*01 TRAJ47*01 27.0 1891.0 CAMTEYGNKLVF_ 1 5492 Nef90-97 HIV 0.68 8 NEG 87 5405 3 HIV-1 Nef FLKEKGGL Naive T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-B*08:01 B2M MHCI -10455 chip0423_21245 5.65 10.3 Chip2 T1D_6 T1D _ 6746 4968 EBV-LMP2-FLY EBV 0.71 355 NEG 88 4880 6 EBV LMP2 FLYALALLL central memory T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*02:01 B2M MHCI -10456 chip0423_191618 -4.77 9.44 Chip2 healthy_3 healthy TGTGCAATGAGAGAGACAGTTGGTGGTACTAGCTATGGAAAGCTGACATTT CAMRETVGGTSYGKLTF TRAV14/DV4*01 TRAJ52*01 50.0 1333.0 CAMRETVGGTSYGKLTF_ 1 6046 GAD65-536-545 GAD65 0.65 7 NEG 82 5964 2 HomoSapiens GAD65 RMMEYGTTMV Naive T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*02:01 B2M MHCI -10457 chip0423_217363 6.13 13.98 Chip2 healthy_3 healthy _ 6746 5217 NP44-52 FLU 0.71 474 NP44-52 84 5133 7 InfluenzaA NP CTELKLSDY transitional T cells between effector and memory populations PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*01:01 B2M MHCI -10458 chip0423_146633 14.08 12.89 Chip2 T1D_4 T1D _ 6746 2536 BZLF1-190-197 EBV 0.64 2156 BZLF1-190-197 116 2420 12 EBV BZLF1 RAKFKQLL effector T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-B*08:01 B2M MHCI -10459 chip0423_491820 12.08 13.54 Chip2 T1D_4 T1D TGTGCCAGCAGCTTAGCGGTCGGAGAAGGGCCCCAGCATTTT CASSLAVGEGPQHF TRBV7-9*01 TRBJ1-5*01 11.0 466.0 _CASSLAVGEGPQHF 113 2032 BZLF1-190-197 EBV 0.8 2156 BZLF1-190-197 122 1910 11 EBV BZLF1 RAKFKQLL effector T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-B*08:01 B2M MHCI -10460 chip0423_360504 7.44 12.04 Chip2 healthy_3 healthy TGTGCAGCAAGCGGATATAACACCGACAAGCTCATCTTT CAASGYNTDKLIF TRAV29/DV5*01 TRAJ34*01 25.0 2035.0 CAASGYNTDKLIF_ 2 4743 NP44-52 FLU 0.71 474 NP44-52 109 4634 7 InfluenzaA NP CTELKLSDY transitional T cells between effector and memory populations PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*01:01 B2M MHCI -10461 chip0423_784092 10.38 10.29 Chip2 healthy_4 healthy TGCAGTGCCCTCGCCACAGTTCTTAATGAAAAACTGTTTTTT CSALATVLNEKLFF TRBV20-1*01 TRBJ1-4*01 13.0 438.0 _CSALATVLNEKLFF 1 3757 EBV-BRLF1 EBV 0.77 1264 NEG 123 3634 9 EBV BRLF1 YVLDHLIVV effector memory T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*02:01 B2M MHCI -10462 chip0423_502452 6.01 13.6 Chip2 healthy_3 healthy _ 6746 5620 NP44-52 FLU 0.94 474 NP44-52 97 5523 7 InfluenzaA NP CTELKLSDY transitional T cells between effector and memory populations PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*01:01 B2M MHCI -10463 chip0423_77964 9.02 9.0 Chip2 healthy_4 healthy TGTGCTGTGGAGGATCAAGGGAGATCTTATAACACCGACAAGCTCATCTTT CAVEDQGRSYNTDKLIF TRAV2*01 TRAJ34*01 1.0 56.0 CAVEDQGRSYNTDKLIF_ 15 4865 BZLF1-190-197 EBV 0.69 2156 NEG 102 4763 8 EBV BZLF1 RAKFKQLL effector memory T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-B*08:01 B2M MHCI -10464 chip0423_710503 6.99 13.38 Chip2 T1D_5 T1D TGTGCAGCAAGCGAAACCTCCTACGACAAGGTGATATTT CAASETSYDKVIF TRAV13-1*01 TRAJ50*01 28.0 2026.0 TGTGCCAGCAGCCTACTAGGACATCGAAATTCACCCCTCCACTTT CASSLLGHRNSPLHF TRBV7-9*01 TRBJ1-6*01 27.0 735.0 CAASETSYDKVIF_CASSLLGHRNSPLHF 1 3235 BZLF1-190-197 EBV 0.4 2156 NEG 116 3119 7 EBV BZLF1 RAKFKQLL transitional T cells between effector and memory populations PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-B*08:01 B2M MHCI -10465 chip0423_608761 9.07 8.45 Chip2 healthy_4 healthy _ 6746 4490 BZLF1-190-197 EBV 0.71 2156 NEG 110 4380 8 EBV BZLF1 RAKFKQLL effector memory T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-B*08:01 B2M MHCI -10466 chip0423_869380 10.03 10.47 Chip2 T1D_5 T1D TGTGCCAGCTCCCAGTTGGGGGGGGTTTACAATGAGCAGTTCTTC CASSQLGGVYNEQFF TRBV7-9*01 TRBJ2-1*01 1.0 17.0 _CASSQLGGVYNEQFF 13 4662 BZLF1-190-197 EBV 0.63 2156 BZLF1-190-197 105 4557 9 EBV BZLF1 RAKFKQLL effector memory T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-B*08:01 B2M MHCI -10467 chip0423_569102 -1.91 12.0 Chip2 T1D_6 T1D TGTGCCAGCAGTTTTGCACCCTTGGATGGCTACACCTTC CASSFAPLDGYTF TRBV28*01 TRBJ1-2*01 37.0 3136.0 _CASSFAPLDGYTF 1 4720 HCVNS4B-1807-1816 HCV 0.8 74 NEG 101 4619 1 HCV NS4B LLFNILGGWV Naive T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*02:01 B2M MHCI -10468 chip0423_438719 -3.76 12.5 Chip2 T1D_6 T1D TGTGCCGTGAAATTGAGAGGTGCTGACGGACTCACCTTT CAVKLRGADGLTF TRAV12-2*01 TRAJ45*01 37.0 2112.0 TGTGCCAGCAGCCTACTAGACGATGGCTACACCTTC CASSLLDDGYTF TRBV5-5*01 TRBJ1-2*01 45.0 3063.0 CAVKLRGADGLTF_CASSLLDDGYTF 1 5165 PGT-178 PGT 0.67 1480 NEG 91 5074 1 HomoSapiens PGT LLAGIGTVPI Naive T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*02:01 B2M MHCI -10469 chip0423_621688 11.93 12.3 Chip2 healthy_3 healthy _ 6746 2335 GAD65-114-122 GAD65 0.9 63 NEG 82 2253 11 HomoSapiens GAD65 VMNILLQYV effector T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*02:01 B2M MHCI -10470 chip0423_476010 -3.88 9.8 Chip2 healthy_3 healthy TGTGCAGCCCCTTCTTCTGGTTCTGCAAGGCAACTGACCTTT CAAPSSGSARQLTF TRAV13-1*01 TRAJ22*01 3.0 79.0 TGTGCCAGCAGCCTTTTAGCGGGAGGTGGGAACACCGGGGAGCTGTTTTTT CASSLLAGGGNTGELFF TRBV5-4*01 TRBJ2-2*01 16.0 511.0 CAAPSSGSARQLTF_CASSLLAGGGNTGELFF 1 6784 NP140-148 FLU 0.92 102 NP140-148 101 6683 2 InfluenzaA NP HSNLNDATY Naive T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*01:01 B2M MHCI -10471 chip0423_56362 6.67 12.36 Chip2 healthy_3 healthy TGTGCTCGTCGCGGTTCTGGTTCTGCCCGGCCCCTGACCTTT CARRGSGSARPLTF TRAV36/DV7*01 TRAJ22*01 34.0 2023.0 TGTGCTGTTCTCCCCTCTAACGACTACAAGCTCAGCTTT CAVLPSNDYKLSF TRAV12-3*01 TRAJ20*01 18.0 1640.0 0.26 TGTGCCAGTATCGGAAAGACCACTAGCACAGATACGCAGTATTTT CASIGKTTSTDTQYF TRBV19*01 TRBJ2-3*01 71.0 2358.0 CARRGSGSARPLTF_CASIGKTTSTDTQYF 2 5764 NP44-52 FLU 0.78 474 NP44-52 100 5664 7 InfluenzaA NP CTELKLSDY transitional T cells between effector and memory populations PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*01:01 B2M MHCI -10472 chip0423_563297 -3.63 8.51 Chip2 T1D_4 T1D TGTGCAGCAAGTTTTCAGGGAGCCCAGAAGCTGATATTT CAASFQGAQKLIF TRAV29/DV5*01 TRAJ54*01 31.0 1908.0 TGTGCCATCAGCCCCGGACTAGCGGGCCTGTACAATGAGCAGTTCTTC CAISPGLAGLYNEQFF TRBV10-3*01 TRBJ2-1*01 15.0 964.0 CAASFQGAQKLIF_CAISPGLAGLYNEQFF 1 7900 IAPP-NTY-9 IAPP 0.6 4 NEG 87 7813 2 HomoSapiens IAPP NTYGKRNAV Naive T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-B*08:01 B2M MHCI -10473 chip0423_544212 8.87 13.66 Chip2 T1D_4 T1D TGTGCCAGCAGCTGGGGGCCGGAGCAGTACTTC CASSWGPEQYF TRBV7-9*01 TRBJ2-7*01 9.0 819.0 _CASSWGPEQYF 1 2702 EBNA3A-193-201 EBV 0.62 1022 NEG 92 2610 11 EBV EBNA3A FLRGRAYGL effector T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-B*08:01 B2M MHCI -10474 chip0423_376197 -3.18 13.86 Chip2 T1D_6 T1D TGTGCCAGCAGTTCTCTACTTACAGGGATTGAGACCCAGTACTTC CASSSLLTGIETQYF TRBV28*01 TRBJ2-5*01 2.0 5.0 _CASSSLLTGIETQYF 1 4215 PGT-178 PGT 0.62 1480 PGT-178 93 4122 1 HomoSapiens PGT LLAGIGTVPI Naive T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*02:01 B2M MHCI -10475 chip0423_270869 8.0 9.22 Chip2 T1D_5 T1D TGTGCAGCAAAAGAAACCTCCTACGACAAGGTGATATTT CAAKETSYDKVIF TRAV13-1*01 TRAJ50*01 9.0 896.0 TGTGCCAGCAGCTTATTAGGACGATCGAACACTGAAGCTTTCTTT CASSLLGRSNTEAFF TRBV7-9*01 TRBJ1-1*01 23.0 303.0 CAAKETSYDKVIF_CASSLLGRSNTEAFF 13 3742 BZLF1-190-197 EBV 0.57 2156 NEG 107 3635 8 EBV BZLF1 RAKFKQLL effector memory T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-B*08:01 B2M MHCI -10476 chip0423_545651 -0.29 9.03 Chip2 healthy_4 healthy TGTGCTGTGGAGGATTATAGCAGTGCCAGACTCCTGTTT CAVEDYSSARLLF TRAV2*01 TRAJ31*01 1.0 13.0 CAVEDYSSARLLF_ 1 6079 CVB3-P3A CVB 0.67 77 NEG 83 5996 4 CoxsackievirusB P3A GIIYIIYKL Naive T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*02:01 B2M MHCI -10477 chip0423_393233 9.71 10.35 Chip2 T1D_4 T1D TGTGCCTTTTTCAGATGGCCAGAAGCTGCTCTTT CAFFRtg??gcQKLLF TRAV24*01 TRAJ16*01 2.0 11.0 TGCAGCGGGGGACAGGGCCCCTACGAGCAGTACTTC CSGGQGPYEQYF TRBV29-1*01 TRBJ2-7*01 124.0 11125.0 CAFFRtg??gcQKLLF_CSGGQGPYEQYF 1 5877 BZLF1-190-197 EBV 0.43 2156 NEG 106 5771 9 EBV BZLF1 RAKFKQLL effector memory T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-B*08:01 B2M MHCI -10478 chip0423_197114 10.89 12.22 Chip2 T1D_5 T1D TGTGCCAGCCAACTAGCGGGAGGCACCGGGGAGCTGTTTTTT CASQLAGGTGELFF TRBV24-1*01 TRBJ2-2*01 7.0 430.0 _CASQLAGGTGELFF 69 2171 BZLF1-190-197 EBV 0.67 2156 NEG 110 2061 11 EBV BZLF1 RAKFKQLL effector T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-B*08:01 B2M MHCI -10479 chip0423_50081 11.49 10.65 Chip2 T1D_5 T1D TGTGCCAGCAGCTGGCTCGGGGGTCGGTATAATTCACCCCTCCACTTT CASSWLGGRYNSPLHF TRAV20*01 TRAJ11*01 2.0 5.0 TGTGCCAGCAGCTGGCTCGGGGATCGGTATAATTCACCCCTCCACTTT CASSWLGDRYNSPLHF TRBV7-9*01 TRBJ1-6*01 35.0 1446.0 CASSWLGGRYNSPLHF_CASSWLGDRYNSPLHF 1 4401 BZLF1-190-197 EBV 0.46 2156 NEG 92 4309 9 EBV BZLF1 RAKFKQLL effector memory T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-B*08:01 B2M MHCI -10480 chip0423_423251 9.59 7.79 Chip2 healthy_5 healthy TGTGCAGCAAGTGAGACCTCCTACGACAAGGTGATATTT CAASETSYDKVIF TRAV13-1*01 TRAJ50*01 31.0 2104.0 TGTGCCAGCAGCTCATTACAGCCATACGAGCAGTACTTC CASSSLQPYEQYF TRBV7-9*01 TRBJ2-7*01 15.0 650.0 CAASETSYDKVIF_CASSSLQPYEQYF 2 4248 BZLF1-190-197 EBV 0.57 2156 NEG 98 4150 8 EBV BZLF1 RAKFKQLL effector memory T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-B*08:01 B2M MHCI -10481 chip0423_694650 13.38 8.05 Chip2 T1D_5 T1D TGCAGCGTTGGGACAGCCTATGGCTACACCTTC CSVGTAYGYTF TRBV29-1*01 TRBJ1-2*01 6.0 518.0 _CSVGTAYGYTF 1 2605 BZLF1-190-197 EBV 0.8 2156 NEG 98 2507 10 EBV BZLF1 RAKFKQLL effector memory T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-B*08:01 B2M MHCI -10482 chip0423_126241 13.14 8.41 Chip2 healthy_5 healthy TGCATCGTCAGAGAGGGAGGAGGTGCTGACGGCCTCACCTTT CIVREGGGADGLTF TRAV26-1*01 TRAJ45*01 3.0 114.0 TGTGCCAGCAGTACCTACGAGGGCTACGAGCAGTACTTC CASSTYEGYEQYF TRBV9*01 TRBJ2-7*01 5.0 323.0 CIVREGGGADGLTF_CASSTYEGYEQYF 1 3454 BZLF1-190-197 EBV 0.67 2156 NEG 89 3365 10 EBV BZLF1 RAKFKQLL effector memory T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-B*08:01 B2M MHCI -10483 chip0423_60839 -2.57 8.25 Chip2 T1D_4 T1D TGTGCTGTGCAAGGTAGCAACTATAAACTGACATTT CAVQGSNYKLTF TRAV20*01 TRAJ53*01 77.0 5313.0 CAVQGSNYKLTF_ 1 7219 PGT-178 PGT 0.57 1480 NEG 85 7134 2 HomoSapiens PGT LLAGIGTVPI Naive T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*02:01 B2M MHCI -10484 chip0423_801030 11.05 9.51 Chip2 T1D_5 T1D TGTGCCAGCAGGCCACTACAGGGGGCGGGCGAAAAACTGTTTTTT CASRPLQGAGEKLFF TRBV7-9*01 TRBJ1-4*01 2.0 47.0 _CASRPLQGAGEKLFF 1 3671 BZLF1-190-197 EBV 0.88 2156 BZLF1-190-197 107 3564 9 EBV BZLF1 RAKFKQLL effector memory T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-B*08:01 B2M MHCI -10485 chip0423_667189 7.58 11.45 Chip2 healthy_3 healthy TGTGCCAGCAGTGAAATGTGGGGAGCACCCCTCCACTTT CASSEMWGAPLHF TRBV2*01 TRBJ1-6*01 15.0 1101.0 _CASSEMWGAPLHF 14 6116 NP44-52 FLU 0.89 474 NP44-52 100 6016 7 InfluenzaA NP CTELKLSDY transitional T cells between effector and memory populations PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*01:01 B2M MHCI -10486 chip0423_797899 -3.68 10.35 Chip2 T1D_6 T1D _ 6746 5363 PGT-178 PGT 0.83 1480 PGT-178 90 5273 2 HomoSapiens PGT LLAGIGTVPI Naive T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*02:01 B2M MHCI -10487 chip0423_835719 7.98 13.48 Chip2 T1D_6 T1D TGTGCTGTGGGGACCATGGCTCTAGCAACACAGGCAAACTAATCTTT CAVGTMAct?SNTGKLIF TRAV8-3*01 TRAJ37*01 1.0 25.0 TGTGCCAGCAGCTTAGCGGGTCGTGAGGGTACGCAGTATTTT CASSLAGREGTQYF TRBV11-3*01 TRBJ2-3*01 28.0 1010.0 CAVGTMAct?SNTGKLIF_CASSLAGREGTQYF 3 2671 NP380-388 FLU 0.8 60 NEG 93 2578 7 InfluenzaA NP ELRSRYWAI transitional T cells between effector and memory populations PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-B*08:01 B2M MHCI -10488 chip0423_675338 7.82 10.83 Chip2 healthy_4 healthy TGCATCCTTCCTTTGGGTGGTGGTACTAGCTATGGAAAGCTGACATTT CILPLGGGTSYGKLTF TRAV26-2*01 TRAJ52*01 17.0 850.0 CILPLGGGTSYGKLTF_ 1 5358 EBNA3A-193-201 EBV 1.0 1022 NEG 86 5272 7 EBV EBNA3A FLRGRAYGL transitional T cells between effector and memory populations PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-B*08:01 B2M MHCI -10489 chip0423_851039 4.76 10.23 Chip2 healthy_3 healthy TGTGCTTTATGGGGCCAGAATCTGGTCTTT CALWGQNLVF TRAV8-6*01 TRAJ16*01 8.0 1254.0 TGTGCCAGCAGCCCGGACGGCACATACGAGCAGTACTTC CASSPDGTYEQYF TRBV7-9*01 TRBJ2-7*01 13.0 493.0 CALWGQNLVF_CASSPDGTYEQYF 1 2557 IGRP-228-236 IGRP 0.62 16 NEG 94 2463 6 HomoSapiens IGRP LNIDLLWSV central memory T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*02:01 B2M MHCI -10490 chip0423_781246 -1.76 10.18 Chip2 healthy_4 healthy TGTGCCAGCAGTGATGGACCAGGGCGCAATCAGCCCCAGCATTTT CASSDGPGRNQPQHF TRBV25-1*01 TRBJ1-5*01 69.0 2850.0 _CASSDGPGRNQPQHF 1 5209 PREINS-34-42 INS 0.88 9 NEG 82 5127 3 HomoSapiens PREINS HLVEALYLV Naive T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*02:01 B2M MHCI -10491 chip0423_406886 11.01 8.19 Chip2 healthy_4 healthy TGTGCTGTGGAGAAGAAGAACACCGACACGCTCATCTTT CAVEKKNTDTLIF TRAV12-2*01 TRAJ34*01 33.0 1960.0 TGTGCCAGCAGCTTAAACGTCGGGGAGGGCGCAGGAAACACCATATATTTT CASSLNVGEGAGNTIYF TRBV7-6*01 TRBJ1-3*01 15.0 475.0 CAVEKKNTDTLIF_CASSLNVGEGAGNTIYF 1 4767 BZLF1-190-197 EBV 0.87 2156 NEG 92 4675 6 EBV BZLF1 RAKFKQLL central memory T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-B*08:01 B2M MHCI -10492 chip0423_196401 14.41 10.72 Chip2 healthy_4 healthy _ 6746 5610 BZLF1-190-197 EBV 1.0 2156 NEG 104 5506 12 EBV BZLF1 RAKFKQLL effector T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-B*08:01 B2M MHCI -10493 chip0423_724538 10.76 10.96 Chip2 healthy_3 healthy _ 6746 3506 IGRP-265-273 IGRP 0.85 34 NEG 102 3404 9 HomoSapiens IGRP VLFGLGFAI effector memory T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*02:01 B2M MHCI -10494 chip0423_481122 16.08 11.93 Chip2 healthy_3 healthy TGTGCTGCGGACGGGAGGGCCCCGTGGCTCTAGGCTCACCTTG CAADGRA??cRGSRLTL TRAV17*01 TRAJ11*01 15.0 411.0 CAADGRA??cRGSRLTL_ 1 2538 M1 FLU 0.63 1250 NEG 115 2423 12 InfluenzaA M1 GILGFVFTL effector T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*02:01 B2M MHCI -10495 chip0423_163331 -3.56 11.0 Chip2 T1D_6 T1D TGTGCCAGCAGTTTAATCCCCCAATTCACCGGGGAGCTGTTTTTT CASSLIPQFTGELFF TRBV12-3*01,TRBV12-4*01 TRBJ2-2*01 25.0 1048.0 _CASSLIPQFTGELFF 1 4154 PREINS-2-10 INS 0.9 37 NEG 90 4064 2 HomoSapiens PREINS ALWMRLLPL Naive T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*02:01 B2M MHCI -10496 chip0423_732093 6.28 14.27 Chip2 healthy_3 healthy TGTGCTAGTGGTCCGACTCATGGCTACACCTTC CASGPTHGYTF TRBV12-5*01 TRBJ1-2*01 18.0 1518.0 _CASGPTHGYTF 3 5026 NP44-52 FLU 0.67 474 NP44-52 91 4935 7 InfluenzaA NP CTELKLSDY transitional T cells between effector and memory populations PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*01:01 B2M MHCI -10497 chip0423_367014 10.62 8.37 Chip2 T1D_5 T1D TGCGCCAGCTCCCAGTTGAGGGGGGTTTACAATGAGCAGTTCTTC CASSQLRGVYNEQFF TRBV7-9*01 TRBJ2-1*01 1.0 45.0 _CASSQLRGVYNEQFF 1 4498 BZLF1-190-197 EBV 0.93 2156 BZLF1-190-197 91 4407 10 EBV BZLF1 RAKFKQLL effector memory T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-B*08:01 B2M MHCI -10498 chip0423_338937 6.87 13.46 Chip2 healthy_3 healthy TGTGCTCTGAGTTCTTATTCTGGGGGTTACCAGAAAGTTACCTCT CALSSYSGGYQKVTS TRAV19*01 TRAJ13*01 37.0 1598.0 TGCAGTGCCGATTCCTACCGGGACATTGTTAACTATGGCTACACCTTC CSADSYRDIVNYGYTF TRBV20-1*01 TRBJ1-2*01 18.0 718.0 CALSSYSGGYQKVTS_CSADSYRDIVNYGYTF 1 4880 NP44-52 FLU 0.78 474 NP44-52 103 4777 7 InfluenzaA NP CTELKLSDY transitional T cells between effector and memory populations PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*01:01 B2M MHCI -10499 chip0423_127916 16.08 10.03 Chip2 healthy_4 healthy TGCAGCGTTGGCGCAGGGGGAACTAATGAAAAACTGTTTTTT CSVGAGGTNEKLFF TRBV29-1*01 TRBJ1-4*01 115.0 5834.0 _CSVGAGGTNEKLFF 51 3007 EBV-BLMF1 EBV 1.0 2531 NEG 123 2884 12 EBV BLMF1 GLCTLVAML effector T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*02:01 B2M MHCI -10500 chip0423_666023 -2.31 13.79 Chip2 T1D_4 T1D TGTGCTCTAGGCGCCTCTGGTGGCTACAATAAGCTGCTTTTT CALGASGGYNKLLF TRAV6*01 TRAJ4*01 3.0 120.0 TGTGCCAGCAGCTTAGTGGGACAGAACACCGGGGAGCTGTTTTTT CASSLVGQNTGELFF TRBV7-9*01 TRBJ2-2*01 25.0 1018.0 CALGASGGYNKLLF_CASSLVGQNTGELFF 1 3591 PTPRN-797-805 PTPRN 0.54 12 NEG 96 3495 1 HomoSapiens PTPRN MVWESGCTV Naive T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*02:01 B2M MHCI -10501 chip0423_662827 -2.89 13.64 Chip2 T1D_5 T1D TGCAGCGTGGATTTGAGCACAGCTTTCTTT CSVDLSTAFF TRBV29-1*01 TRBJ1-1*01 15.0 1692.0 _CSVDLSTAFF 1 2896 IAPP-STN-9 IAPP 0.88 48 IAPP-STN-9 83 2813 1 HomoSapiens IAPP STNVGSNTY Naive T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*01:01 B2M MHCI -10502 chip0423_603394 15.49 11.51 Chip2 healthy_4 healthy TGTGCCCGCAGCTTGGCTCGTCCTTCCTACTACGCGCAGTACTTC CARSLARPSYYAQYF TRBV11-2*01 TRBJ2-7*01 8.0 346.0 _CARSLARPSYYAQYF 1 2007 ZNT8-273-282 ZNT8 0.67 8 NEG 112 1895 12 HomoSapiens ZNT8 LLMEGVPKSL effector T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*02:01 B2M MHCI -10503 chip0423_734288 -2.73 13.6 Chip2 healthy_3 healthy TGTGCCAGCAGCCCGGGACTAGCGGATAGGGTGACCAGCGAGCAGTTCTTC CASSPGLADRVTSEQFF TRBV28*01 TRBJ2-1*01 21.0 1002.0 _CASSPGLADRVTSEQFF 1 3982 PGT-178 PGT 0.54 1480 PGT-178 80 3902 1 HomoSapiens PGT LLAGIGTVPI Naive T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*02:01 B2M MHCI -10504 chip0423_663784 10.96 7.69 Chip2 T1D_6 T1D TGTGCTCCCCTTGCGGATAGCATCTCTTAGTTAATCTGG CAPLADSIS*LIW TRAV16*01 TRAJ33*01 9.0 1172.0 TGCAGCGCCGGCAGGGACGGGACTAATGAAAAACTGTTTTTT CSAGRDGTNEKLFF TRBV29-1*01 TRBJ1-4*01 1.0 26.0 CAPLADSIS*LIW_CSAGRDGTNEKLFF 1 7665 EBV-LMP2-FLY EBV 0.58 355 NEG 107 7558 6 EBV LMP2 FLYALALLL central memory T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*02:01 B2M MHCI -10505 chip0423_387985 -4.25 11.43 Chip2 T1D_4 T1D TGTGCTGTGACCGGGTACAACAGCCTCGCTTTT CAVTGYNSLAF TRAV8-4*01 TRAJ7*01 15.0 1061.0 CAVTGYNSLAF_ 1 3356 GAG-433-442 HIV 0.67 19 NEG 93 3263 2 HIV-1 GAG FLGKIWPSYK Naive T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*02:01 B2M MHCI -10506 chip0423_697533 8.91 14.04 Chip2 healthy_4 healthy _ 6746 1684 M1 FLU 0.75 1250 M1 94 1590 11 InfluenzaA M1 GILGFVFTL effector T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*02:01 B2M MHCI -10507 chip0423_177370 -0.09 6.29 Chip2 healthy_3 healthy TGTGCTGTTAACCAGGCAGGAACTGCTCTGATCTTT CAVNQAGTALIF TRAV21*01 TRAJ15*01 1.0 71.0 TGCGCCAGCAGCGAGGACAGTTTGGAGTGGTACGAGCAGTACTTC CASSEDSLEWYEQYF TRBV5-1*01 TRBJ2-7*01 43.0 1547.0 CAVNQAGTALIF_CASSEDSLEWYEQYF 1 9882 INS-2-11 INS 0.62 5 NEG 91 9791 3 HomoSapiens INS ALWMRLLPLL Naive T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*02:01 B2M MHCI -10508 chip0423_390978 12.04 14.04 Chip2 healthy_3 healthy TGTGCCAGTAGTCGATATCCCGTAGATACGCAGTATCTT CASSRYPVDTQYL TRBV19*01 TRBJ2-3*01 14.0 525.0 _CASSRYPVDTQYL 1 1076 M1 FLU 0.75 1250 NEG 102 974 11 InfluenzaA M1 GILGFVFTL effector T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*02:01 B2M MHCI -10509 chip0423_702775 -2.75 14.13 Chip2 T1D_6 T1D TGTGCCGTGAACCTGGCTGCAGGCAACAAGCTAACTTTT CAVNLAAGNKLTF TRAV12-2*01 TRAJ17*01 31.0 2087.0 TGTGCCAGCAGTTACTCTTTTGAGGGTCAGCCCCAGCATTTT CASSYSFEGQPQHF TRBV6-5*01 TRBJ1-5*01 36.0 1468.0 CAVNLAAGNKLTF_CASSYSFEGQPQHF 1 3493 PGT-178 PGT 0.5 1480 NEG 100 3393 1 HomoSapiens PGT LLAGIGTVPI Naive T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*02:01 B2M MHCI -10510 chip0423_11500 -5.14 9.72 Chip2 healthy_3 healthy TGTGCCGTGATGGGAGCCCAGAAGCTGGTATTT CAVMGAQKLVF TRAV12-2*01 TRAJ54*01 22.0 2576.0 TGTGCCAGCAGTTCCGGGACTAGCGGTTTTGGGAGGCAGTTCTTC CASSSGTSGFGRQFF TRBV7-8*01 TRBJ2-1*01 1.0 78.0 CAVMGAQKLVF_CASSSGTSGFGRQFF 1 5133 PGT-178 PGT 0.85 1480 NEG 92 5041 2 HomoSapiens PGT LLAGIGTVPI Naive T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*02:01 B2M MHCI -10511 chip0423_538134 11.23 10.71 Chip2 T1D_5 T1D TGTGCCAGCAGCTTAGTGGGGGGAAATAATTCACCCCTCCACTTT CASSLVGGNNSPLHF TRAV36/DV7*01 TRAJ11*01 2.0 9.0 TGTGCCAGCAGCTTAGTGGGGGGAAATAATTCACCCCTCCACTTT CASSLVGGNNSPLHF TRBV7-9*01 TRBJ1-6*01 60.0 2190.0 CASSLVGGNNSPLHF_CASSLVGGNNSPLHF 1 3287 BZLF1-190-197 EBV 0.88 2156 BZLF1-190-197 95 3192 9 EBV BZLF1 RAKFKQLL effector memory T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-B*08:01 B2M MHCI -10512 chip0423_353990 15.19 12.24 Chip2 T1D_6 T1D TGTGCCAGCAGCTTGGGACAGGCCTACGAGCAGTACTTC CASSLGQAYEQYF TRBV7-8*01 TRBJ2-7*01 4.0 208.0 _CASSLGQAYEQYF 175 2743 EBNA3A-193-201 EBV 0.67 1022 NEG 126 2617 12 EBV EBNA3A FLRGRAYGL effector T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-B*08:01 B2M MHCI -10513 chip0423_321381 12.36 13.42 Chip2 T1D_4 T1D GGTGCTGTAAGTGACTGGGCTTCTTGGGGCTACCAGACGGTTACCTTT GAVSDWASWGYQTVTF TRAV8-4*01 TRAJ13*01 5.0 132.0 TGCATCGTCAGAGTCGTGCGTACGACACTGCCAGTAAACTCACCTTT CIVRVVRac?DTASKLTF TRAV26-1*01 TRAJ44*01 9.0 503.0 0.41 GAVSDWASWGYQTVTF_ 1 2502 BZLF1-190-197 EBV 0.87 2156 NEG 95 2407 11 EBV BZLF1 RAKFKQLL effector T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-B*08:01 B2M MHCI -10514 chip0423_738189 10.97 10.22 Chip2 healthy_3 healthy TGTGCCAGCAGCCAGATGTCAGATACGCAGTATTTT CASSQMSDTQYF TRBV6-2*01,TRBV6-3*01 TRBJ2-3*01 6.0 581.0 _CASSQMSDTQYF 6 4201 EBV-BRLF1 EBV 0.66 1264 EBV-BRLF1 78 4123 9 EBV BRLF1 YVLDHLIVV effector memory T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*02:01 B2M MHCI -10515 chip0423_539798 -2.91 10.96 Chip2 healthy_3 healthy CGTGCCGGCAGTTTATCCGCACTGGGCGGTGTCTATGGCTACACCTTC RAGSLSALGGVYGYTF TRBV27*01 TRBJ1-2*01 3.0 61.0 _RAGSLSALGGVYGYTF 1 3842 PA-46-54 FLU 0.77 18 PA-46-54 85 3757 3 InfluenzaA PA FMYSDFHFI Naive T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*02:01 B2M MHCI -10516 chip0423_381136 8.02 13.58 Chip2 healthy_3 healthy TGCGCTGATTACAGCAGTGCTTCCAAGATAATCTTT CADYSSASKIIF TRAV1-1*01 TRAJ3*01 4.0 216.0 TGCGCTAGCAGCCAAGATGGACTAGCGGCAACTAGCACAGATACGCAGTATTTT CASSQDGLAATSTDTQYF TRBV4-1*01 TRBJ2-3*01 19.0 544.0 CADYSSASKIIF_CASSQDGLAATSTDTQYF 4 2971 NP44-52 FLU 0.7 474 NP44-52 97 2874 7 InfluenzaA NP CTELKLSDY transitional T cells between effector and memory populations PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*01:01 B2M MHCI -10517 chip0423_170605 6.03 12.83 Chip2 healthy_3 healthy TGTGCTCTGAGTTCTTATTCTGGGGGTTACCAGAAAGTTACCTTT CALSSYSGGYQKVTF TRAV19*01 TRAJ13*01 41.0 1984.0 TGCAGTGCCGATTCCTACCGGGACATTGATAACTATGGCTACACCTTC CSADSYRDIDNYGYTF TRBV20-1*01 TRBJ1-2*01 4.0 197.0 CALSSYSGGYQKVTF_CSADSYRDIDNYGYTF 2 5936 NP44-52 FLU 0.73 474 NP44-52 107 5829 7 InfluenzaA NP CTELKLSDY transitional T cells between effector and memory populations PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*01:01 B2M MHCI -10518 chip0423_704501 -4.0 8.78 Chip2 healthy_3 healthy TGTGCCGTGAACTTTGGAAATGAGAAATTAACCTTT CAVNFGNEKLTF TRAV12-2*01 TRAJ48*01 30.0 1974.0 TGTGCCAGCAGTTTCGGCGGCCCCTACGAGCAGTACTTC CASSFGGPYEQYF TRBV27*01 TRBJ2-7*01 26.0 1885.0 CAVNFGNEKLTF_CASSFGGPYEQYF 1 5926 MART1-A28L MART1 0.63 84 MART1-A28L 88 5838 2 HomoSapiens MART1 ALGIGILTV Naive T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*02:01 B2M MHCI -10519 chip0423_383559 -4.26 11.06 Chip2 T1D_6 T1D TGTGCCGGCGGCTTTCAGAAACTTGTATTT CAGGFQKLVF TRAV12-2*01 TRAJ8*01 8.0 639.0 TGTGCCAGCAGCTCCCGGACTGCAAGCTACAATGAGCAGTTCTTC CASSSRTASYNEQFF TRBV13*01 TRBJ2-1*01 2.0 68.0 CAGGFQKLVF_CASSSRTASYNEQFF 1 4084 PREINS-2-10 INS 0.75 37 NEG 90 3994 2 HomoSapiens PREINS ALWMRLLPL Naive T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*02:01 B2M MHCI -10520 chip0423_382362 -2.97 8.06 Chip2 healthy_3 healthy TGTGCTCTGAACGGCGGTAACTATAGTCAGAATTTTGTCTTT CALNGGNYSQNFVF TRAV19*01 TRAJ26*01 33.0 2052.0 CALNGGNYSQNFVF_ 1 6577 GAD2-VSA-10 GAD65 0.59 21 GAD2-VSA-10 100 6477 3 HomoSapiens GAD2 VSATAGTTVY Naive T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*01:01 B2M MHCI -10521 chip0423_212509 -2.42 7.55 Chip2 healthy_3 healthy _ 6746 5585 GP160-311-320 HIV 0.59 109 NEG 80 5505 3 HIV-1 GP160 RGPGRAFVTI Naive T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*02:01 B2M MHCI -10522 chip0423_790105 10.02 9.73 Chip2 healthy_3 healthy TGCCTCCTCCCTCTTGCTCGTGGTCCTCGCTATGGAAATCTGACATTT CLLPLARGPRYGNLTF TRAV4*01,TRAV26-2*01 TRAJ52*01 2.0 4.0 TGTGCTCTGAGCTCTCCGACAAGCTCATCTTT CALSSc?cDKLIF TRAV9-2*01 TRAJ34*01 2.0 113.0 0.22 TGTGCCAGTGGTAAATACAATGAGCAGTTCTTC CASGKYNEQFF TRBV19*01 TRBJ2-1*01 10.0 734.0 CLLPLARGPRYGNLTF_CASGKYNEQFF 1 4784 EBV-BRLF1 EBV 0.68 1264 EBV-BRLF1 99 4685 9 EBV BRLF1 YVLDHLIVV effector memory T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*02:01 B2M MHCI -10523 chip0423_479520 12.06 14.07 Chip2 T1D_5 T1D TGTGCCAGCCAACTAGCGGGAGGCACCGGGGAGCTGTTTTTT CASQLAGGTGELFF TRBV24-1*01 TRBJ2-2*01 53.0 2224.0 _CASQLAGGTGELFF 69 1137 BZLF1-190-197 EBV 0.8 2156 NEG 107 1030 11 EBV BZLF1 RAKFKQLL effector T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-B*08:01 B2M MHCI -10524 chip0423_519857 7.64 13.71 Chip2 healthy_4 healthy _ 6746 2355 M1 FLU 0.83 1250 NEG 84 2271 6 InfluenzaA M1 GILGFVFTL central memory T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*02:01 B2M MHCI -10525 chip0423_484046 -0.19 8.97 Chip2 T1D_6 T1D TGTGCCAGCACCCCATTCGGGGGTCGCTACGAGCAGTACTTC CASTPFGGRYEQYF TRBV28*01 TRBJ2-7*01 57.0 3188.0 _CASTPFGGRYEQYF 1 5956 ZNT8-165-173 ZNT8 0.46 11 NEG 83 5873 4 HomoSapiens ZNT8 RLLYPDYQI Naive T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*02:01 B2M MHCI -10526 chip0423_383019 -1.85 10.32 Chip2 T1D_6 T1D TGTGCAATGAGTACCTCTAACTTTGGAAATGAGAAATTAACCTTT CAMSTSNFGNEKLTF TRAV12-3*01 TRAJ48*01 26.0 777.0 TGTGCCAGCAGCCAAAAAATCGGGGGCGGTGACAATGAGCAGTTCTTC CASSQKIGGGDNEQFF TRBV3-1*01 TRBJ2-1*01 25.0 1414.0 CAMSTSNFGNEKLTF_CASSQKIGGGDNEQFF 1 5220 PGT-178 PGT 0.69 1480 PGT-178 93 5127 3 HomoSapiens PGT LLAGIGTVPI Naive T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*02:01 B2M MHCI -10527 chip0423_339555 10.37 8.48 Chip2 healthy_4 healthy _ 6746 3686 BZLF1-190-197 EBV 1.0 2156 BZLF1-190-197 107 3579 10 EBV BZLF1 RAKFKQLL effector memory T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-B*08:01 B2M MHCI -10528 chip0423_729482 15.23 12.81 Chip2 healthy_3 healthy _ 6746 2551 NP44-52 FLU 0.55 474 NP44-52 82 2469 12 InfluenzaA NP CTELKLSDY effector T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*01:01 B2M MHCI -10529 chip0423_330010 -4.39 8.97 Chip2 healthy_3 healthy TGCGCCAGCAGTGAGGAATTAGCGGGAGGCGAGCAGTACTTC CASSEELAGGEQYF TRBV10-1*01 TRBJ2-7*01 13.0 913.0 _CASSEELAGGEQYF 1 6734 PGT-178 PGT 0.76 1480 PGT-178 87 6647 2 HomoSapiens PGT LLAGIGTVPI Naive T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*02:01 B2M MHCI -10530 chip0423_138686 -4.38 11.54 Chip2 healthy_3 healthy TGTGCCAGCAGTTTACCTAATGAGCAGTTCTTC CASSLPNEQFF TRBV28*01 TRBJ2-1*01 72.0 3832.0 _CASSLPNEQFF 1 4906 IGRP-228-236 IGRP 0.47 16 NEG 78 4828 1 HomoSapiens IGRP LNIDLLWSV Naive T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*02:01 B2M MHCI -10531 chip0423_873905 -2.3 12.23 Chip2 T1D_4 T1D TGTGCCAGCAGCGGGGGGAATAGCGGGAGACCATACAATGAGCAGTTCTTC CASSGGNSGRPYNEQFF TRBV11-1*01 TRBJ2-1*01 48.0 2353.0 _CASSGGNSGRPYNEQFF 1 4456 G6PC2-YVM-8 IGRP 0.67 8 NEG 88 4368 4 HomoSapiens G6PC2 YVMVTAAL Naive T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-B*08:01 B2M MHCI -10532 chip0423_234230 11.37 9.52 Chip2 T1D_5 T1D TGTGCAGCTCTCGAAACCTCCTACGACAAGGTGATATTT CAALETSYDKVIF TRAV13-1*01 TRAJ50*01 15.0 2038.0 CAALETSYDKVIF_ 3 4618 BZLF1-190-197 EBV 0.54 2156 NEG 90 4528 9 EBV BZLF1 RAKFKQLL effector memory T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-B*08:01 B2M MHCI -10533 chip0423_741303 -3.28 7.46 Chip2 healthy_3 healthy TGTGCTGTCGAAACTGGGGCAAACAACCTCTCCTTT CAVETGANNLSF TRAV3*01 TRAJ36*01 3.0 311.0 TGTGCCAGCAGCTTACCGGGACAGGGGGTTAGTGAGCAGTTCTTC CASSLPGQGVSEQFF TRBV11-1*01 TRBJ2-1*01 13.0 876.0 CAVETGANNLSF_CASSLPGQGVSEQFF 1 6480 ZNT8-115-123 ZNT8 0.45 74 NEG 93 6387 2 HomoSapiens ZNT8 LLSLFSLWL Naive T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*02:01 B2M MHCI -10534 chip0423_577599 6.2 12.25 Chip2 T1D_5 T1D TGTGCAGAGGCGGGGACTGCTCTGCTCTTT CAEAGTALLF TRAV13-2*01 TRAJ15*01 13.0 1646.0 CAEAGTALLF_ 1 5334 NP44-52 FLU 0.86 474 NP44-52 103 5231 7 InfluenzaA NP CTELKLSDY transitional T cells between effector and memory populations PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*01:01 B2M MHCI -10535 chip0423_206804 5.84 10.24 Chip2 T1D_4 T1D TGTGCCAGCAGCTTGGTTTCAGGGTTGAGCTCCTACGAGCAGTACTTC CASSLVSGLSSYEQYF TRBV11-1*01 TRBJ2-7*01 8.0 475.0 _CASSLVSGLSSYEQYF 1 5933 EBV-LMP1-1 EBV 0.94 237 EBV-LMP1-1 109 5824 6 EBV LMP1 YLLEMLWRL central memory T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*02:01 B2M MHCI -10536 chip0423_310915 7.85 11.76 Chip2 healthy_3 healthy _ 6746 5345 NP44-52 FLU 0.62 474 NP44-52 94 5251 7 InfluenzaA NP CTELKLSDY transitional T cells between effector and memory populations PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*01:01 B2M MHCI -10537 chip0423_132504 -4.11 11.58 Chip2 healthy_3 healthy TGTGCACCCCATCAGGAGGAAGCTACATACCTACATTT CAPHQEg?aSYIPTF TRAV13-1*01 TRAJ6*01 28.0 2010.0 CAPHQEg?aSYIPTF_ 1 4037 MART1-A28L MART1 0.75 84 NEG 80 3957 1 HomoSapiens MART1 ALGIGILTV Naive T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*02:01 B2M MHCI -10538 chip0423_257529 -4.73 9.43 Chip2 healthy_3 healthy _ 6746 5984 PGT-178 PGT 0.7 1480 PGT-178 77 5907 2 HomoSapiens PGT LLAGIGTVPI Naive T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*02:01 B2M MHCI -10539 chip0423_879274 -3.08 14.23 Chip2 T1D_4 T1D _ 6746 2827 IAPP-5-13 IAPP 0.62 30 NEG 86 2741 1 HomoSapiens IAPP KLQVFLIVL Naive T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*02:01 B2M MHCI -10540 chip0423_764590 11.06 8.1 Chip2 healthy_3 healthy TGTGCAATGAGATTTCAGCAACTTGTATTT CAMRFQQLVF TRAV14/DV4*01 TRAJ8*01 5.0 601.0 TGTGCCAGCAGCCAAGGCCCTTTTACTCGGCAGCCCCAGCATTTT CASSQGPFTRQPQHF TRBV3-1*01 TRBJ1-5*01 5.0 257.0 CAMRFQQLVF_CASSQGPFTRQPQHF 1 4655 EBV-BRLF1 EBV 0.57 1264 EBV-BRLF1 103 4552 10 EBV BRLF1 YVLDHLIVV effector memory T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*02:01 B2M MHCI -10541 chip0423_156956 10.55 11.49 Chip2 healthy_3 healthy TGTGCTGTGCAGATGAGCCTCCGGTACCTCCCCCTCCATCTTT CAVQMSL??cGTSPSIF TRAV20*01 TRAJ40*01 24.0 771.0 CAVQMSL??cGTSPSIF_ 1 3551 EBV-BRLF1 EBV 0.8 1264 NEG 92 3459 9 EBV BRLF1 YVLDHLIVV effector memory T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*02:01 B2M MHCI -10542 chip0423_273315 10.29 10.05 Chip2 healthy_4 healthy TGTGCCAGCAGGGTAGGCCGAGAACCCACCGGGGAGCTGTTTTTT CASRVGREPTGELFF TRBV3-1*01 TRBJ2-2*01 7.0 443.0 _CASRVGREPTGELFF 13 2583 BZLF1-190-197 EBV 0.91 2156 NEG 79 2504 9 EBV BZLF1 RAKFKQLL effector memory T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-B*08:01 B2M MHCI -10543 chip0423_7167 -3.08 10.19 Chip2 healthy_3 healthy TGTGCAATGAGTTTATCTAACTTTGGAAATGAGAAATTAACCTTT CAMSLSNFGNEKLTF TRAV12-3*01 TRAJ48*01 40.0 1062.0 CAMSLSNFGNEKLTF_ 16 5288 PGT-178 PGT 0.68 1480 PGT-178 96 5192 3 HomoSapiens PGT LLAGIGTVPI Naive T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*02:01 B2M MHCI -10544 chip0423_742373 12.62 7.98 Chip2 T1D_4 T1D TGTGCCAGCCGCTTCGGGCGCGCCTACGAGCAGTACTTC CASRFGRAYEQYF TRBV7-8*01 TRBJ2-7*01 6.0 499.0 _CASRFGRAYEQYF 1 3656 EBNA3A-193-201 EBV 0.9 1022 NEG 108 3548 10 EBV EBNA3A FLRGRAYGL effector memory T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-B*08:01 B2M MHCI -10545 chip0423_429899 13.7 10.49 Chip2 healthy_4 healthy TGTGCTGTGGAGGATCAAGGGAGATCTTATAACACCGACAAGCTCATCTTT CAVEDQGRSYNTDKLIF TRAV2*01 TRAJ34*01 47.0 842.0 TGTGCCAGCAGCTTAAACGTCGGGGAGGGCGCAGGAAACACCATATATTTT CASSLNVGEGAGNTIYF TRBV7-6*01 TRBJ1-3*01 37.0 1381.0 CAVEDQGRSYNTDKLIF_CASSLNVGEGAGNTIYF 10 4081 BZLF1-190-197 EBV 0.62 2156 NEG 96 3985 12 EBV BZLF1 RAKFKQLL effector T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-B*08:01 B2M MHCI -10546 chip0423_499671 14.13 12.36 Chip2 healthy_4 healthy _ 6746 1788 BZLF1-190-197 EBV 0.78 2156 NEG 87 1701 12 EBV BZLF1 RAKFKQLL effector T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-B*08:01 B2M MHCI -10547 chip0423_110321 15.58 10.72 Chip2 healthy_4 healthy _ 6746 2300 BZLF1-190-197 EBV 0.83 2156 NEG 89 2211 12 EBV BZLF1 RAKFKQLL effector T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-B*08:01 B2M MHCI -10548 chip0423_651564 7.19 12.42 Chip2 healthy_3 healthy TGTGCTGGGCATCGGGTGAGGGAGCAACTATAAACTGCCATTT CAGHRVR??gSNYKLPF TRAV35*01 TRAJ53*01 15.0 939.0 CAGHRVR??gSNYKLPF_ 1 5636 M1 FLU 0.4 1250 NEG 104 5532 7 InfluenzaA M1 GILGFVFTL transitional T cells between effector and memory populations PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*02:01 B2M MHCI -10549 chip0423_21846 11.84 10.77 Chip2 T1D_5 T1D TGTGCCAGCAGCCCTCTTGGGAGCCATGAAAAACTGTTTTTT CASSPLGSHEKLFF TRAV36/DV7*01 TRAJ5*01 2.0 4.0 TGTGCCAGCAGCCCTCTTGGGAGCAATGAAAAACTGTTTTTT CASSPLGSNEKLFF TRBV7-9*01 TRBJ1-4*01 71.0 2292.0 CASSPLGSHEKLFF_CASSPLGSNEKLFF 2 3982 BZLF1-190-197 EBV 0.88 2156 NEG 86 3896 9 EBV BZLF1 RAKFKQLL effector memory T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-B*08:01 B2M MHCI -10550 chip0423_14736 9.38 9.76 Chip2 T1D_5 T1D _ 6746 6017 BZLF1-190-197 EBV 0.63 2156 NEG 92 5925 8 EBV BZLF1 RAKFKQLL effector memory T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-B*08:01 B2M MHCI -10551 chip0423_161749 15.96 10.91 Chip2 healthy_5 healthy TGTGCCAGCAGCCAAGATCTAAGGGGCGAGCAGTACTTC CASSQDLRGEQYF TRBV4-2*01 TRBJ2-7*01 14.0 660.0 _CASSQDLRGEQYF 3 1667 LMP2A-CPL EBV 1.0 44 NEG 111 1556 12 EBV LMP2A CPLSKILL effector T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-B*08:01 B2M MHCI -10552 chip0423_253618 13.84 9.98 Chip2 healthy_4 healthy _ 6746 5455 BZLF1-190-197 EBV 0.9 2156 NEG 83 5372 12 EBV BZLF1 RAKFKQLL effector T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-B*08:01 B2M MHCI -10553 chip0423_154214 10.48 8.93 Chip2 healthy_4 healthy TGTGCAATGAGAGACCCCAGGACTGGGGCAAACAACCTCTTCTTT CAMRDPRTGANNLFF TRAV14/DV4*01 TRAJ36*01 27.0 1326.0 TGTGCAGGAGCAGGTTCACGGGAGGAGGAAACAAACTCACCTTT CAGAGSRg?aGGNKLTF TRAV27*01 TRAJ10*01 49.0 1963.0 0.51 TGCGCCAGCAGCCAAGCCCCGGGACAGCGCACCGGGGAGCTGTTTTTT CASSQAPGQRTGELFF TRBV4-1*01 TRBJ2-2*01 25.0 954.0 CAMRDPRTGANNLFF_CASSQAPGQRTGELFF 2 4249 BZLF1-190-197 EBV 0.9 2156 NEG 109 4140 10 EBV BZLF1 RAKFKQLL effector memory T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-B*08:01 B2M MHCI -10554 chip0423_821602 13.63 13.24 Chip2 healthy_3 healthy TGTGCCAGTAGTCGATATTCCGTAGATACGCAGTATTTT CASSRYSVDTQYF TRBV19*01 TRBJ2-3*01 19.0 1131.0 _CASSRYSVDTQYF 4 2617 M1 FLU 0.48 1250 NEG 87 2530 11 InfluenzaA M1 GILGFVFTL effector T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*02:01 B2M MHCI -10555 chip0423_395009 15.92 11.29 Chip2 healthy_3 healthy TGTGCTCTGAGTTCTTATTCTGGGGGTTACCAGAAAGTTACCTTT CALSSYSGGYQKVTF TRAV19*01 TRAJ13*01 38.0 2019.0 TGTGCTCTGAGTCCCCCCCGATCTGCAAGGCCACTGACCTTT CALSPPRSARPLTF TRAV9-2*01 TRAJ22*01 34.0 2062.0 0.38 CALSSYSGGYQKVTF_ 4 3678 NP44-52 FLU 0.6 474 NP44-52 110 3568 12 InfluenzaA NP CTELKLSDY effector T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*01:01 B2M MHCI -10556 chip0423_653430 8.44 11.49 Chip2 T1D_5 T1D TGTGCAGCACGGGAAACCTCCTACGACAAGGTGATATTT CAARETSYDKVIF TRAV13-1*01 TRAJ50*01 12.0 855.0 CAARETSYDKVIF_ 15 3658 BZLF1-190-197 EBV 0.74 2156 NEG 120 3538 7 EBV BZLF1 RAKFKQLL transitional T cells between effector and memory populations PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-B*08:01 B2M MHCI -10557 chip0423_383284 9.28 10.62 Chip2 healthy_4 healthy _ 6746 4123 BZLF1-190-197 EBV 0.83 2156 NEG 107 4016 9 EBV BZLF1 RAKFKQLL effector memory T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-B*08:01 B2M MHCI -10558 chip0423_332016 -3.09 10.57 Chip2 T1D_4 T1D TGTGCTACGATGGATAGCAACTATCAGTTAATCTGG CATMDSNYQLIW TRAV12-1*01 TRAJ33*01 14.0 1154.0 TGCGCCAGCAGCCAAGATCGATACAATGAGCAGTTCTTC CASSQDRYNEQFF TRBV4-3*01 TRBJ2-1*01 2.0 11.0 CATMDSNYQLIW_CASSQDRYNEQFF 1 5038 NP140-148 FLU 0.86 102 NP140-148 100 4938 4 InfluenzaA NP HSNLNDATY Naive T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*01:01 B2M MHCI -10559 chip0423_186958 12.32 6.96 Chip2 healthy_4 healthy TGCGCCAGCAGCCAAGCCCCGGGACAGCGCACCGGGGAGCTGTTTTTT CASSQAPGQRTGELFF TRBV4-1*01 TRBJ2-2*01 16.0 1113.0 _CASSQAPGQRTGELFF 9 3939 BZLF1-190-197 EBV 0.78 2156 NEG 127 3812 10 EBV BZLF1 RAKFKQLL effector memory T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-B*08:01 B2M MHCI -10560 chip0423_848309 5.73 11.37 Chip2 T1D_4 T1D TACGCCAGCAGCTTTATCGGGGGCAGGGGATCTTTAACTATGGCTACACCTTC YASSFIGGag?GIFNYGYTF TRBV5-1*01 TRBJ1-2*01 26.0 1091.0 _YASSFIGGag?GIFNYGYTF 1 6038 EBV-LMP2-FLY EBV 0.93 355 NEG 90 5948 6 EBV LMP2 FLYALALLL central memory T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*02:01 B2M MHCI -10561 chip0423_695996 -3.23 12.31 Chip2 T1D_6 T1D TGTGTGGTGAACCTCGACACCGACAAGCTCATCTTT CVVNLDTDKLIF TRAV12-1*01 TRAJ34*01 3.0 150.0 TGCGCCAGCAGCCCCTCCAACGGGGGCGCTCAGAGGCCCAGTACTTC CASSPSNgg?GRSEAQYF TRBV4-3*01 TRBJ2-5*01 2.0 177.0 CVVNLDTDKLIF_CASSPSNgg?GRSEAQYF 1 5156 PGT-178 PGT 0.7 1480 NEG 85 5071 1 HomoSapiens PGT LLAGIGTVPI Naive T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*02:01 B2M MHCI -10562 chip0423_843746 -3.16 7.38 Chip2 healthy_5 healthy TTAGCTTCTCCGAAACCCGGTGACTAGCTCTATTTT LASPKPGD*LYF TRAV38-1*01 TRAJ49*01 2.0 232.0 TGTGCCAGCAGCTTTAGGGGCGGGGGTATCAATGAGCAGTTCTTC CASSFRGGGINEQFF TRBV11-2*01 TRBJ2-1*01 23.0 1192.0 LASPKPGD*LYF_CASSFRGGGINEQFF 1 6460 GAD2-YAF-9 GAD65 0.83 6 NEG 82 6378 2 HomoSapiens GAD2 YAFLHATDL Naive T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-B*08:01 B2M MHCI -10563 chip0423_872767 -0.5 7.82 Chip2 T1D_6 T1D TGTGCCAGCAGCTCCTCCCTAAATTACAATGAGCAGTTCTTC CASSSSLNYNEQFF TRBV12-3*01,TRBV12-4*01 TRBJ2-1*01 13.0 605.0 _CASSSSLNYNEQFF 1 6426 PGT-178 PGT 0.64 1480 PGT-178 87 6339 4 HomoSapiens PGT LLAGIGTVPI Naive T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*02:01 B2M MHCI -10564 chip0423_373616 8.77 14.01 Chip2 healthy_3 healthy TGTGCCAGTAGCGATCTTAGACAGACAAGCTCCTACAATGAGCAGTTCTTC CASSDLRQTSSYNEQFF TRBV19*01 TRBJ2-1*01 55.0 1951.0 _CASSDLRQTSSYNEQFF 3 2493 NP44-52 FLU 0.59 474 NEG 98 2395 11 InfluenzaA NP CTELKLSDY effector T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*01:01 B2M MHCI -10565 chip0423_776104 11.99 13.36 Chip2 T1D_4 T1D TGTGCTGTGAGTGATGGAGAAGGAGCCCAGAAGCTGGTATTC CAVSDGEGAQKLVF TRAV8-6*01 TRAJ54*01 37.0 2081.0 CAVSDGEGAQKLVF_ 12 2275 BZLF1-190-197 EBV 0.89 2156 NEG 96 2179 11 EBV BZLF1 RAKFKQLL effector T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-B*08:01 B2M MHCI -10566 chip0423_546338 -3.77 9.38 Chip2 T1D_6 T1D TGTGCAATAGGCTCTGGCAACACAGGCAAACTAATCTTT CAIGSGNTGKLIF TRAV12-3*01 TRAJ37*01 8.0 274.0 TGTGCCATCGACAGAAACACTGAAGCTTTCTTT CAIDRNTEAFF TRBV2*01 TRBJ1-1*01 22.0 1263.0 CAIGSGNTGKLIF_CAIDRNTEAFF 1 5509 M1 FLU 0.44 1250 NEG 97 5412 2 InfluenzaA M1 GILGFVFTL Naive T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*02:01 B2M MHCI -10567 chip0423_476363 13.2 8.78 Chip2 healthy_4 healthy _ 6746 2329 EBNA3A-193-201 EBV 1.0 1022 NEG 88 2241 10 EBV EBNA3A FLRGRAYGL effector memory T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-B*08:01 B2M MHCI -10568 chip0423_621326 8.19 13.64 Chip2 healthy_3 healthy TGTGCCAGTAGTATCCGATCCGGGGGGCCCCAGCATTTT CASSIRSGGPQHF TRBV19*01 TRBJ1-5*01 16.0 746.0 _CASSIRSGGPQHF 1 3085 M1 FLU 0.57 1250 NEG 83 3002 7 InfluenzaA M1 GILGFVFTL transitional T cells between effector and memory populations PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*02:01 B2M MHCI -10569 chip0423_485470 12.69 6.53 Chip2 T1D_5 T1D TGTGCCAGCAGTTTAGGGGCGAGGGGAGAGGGCTACACCTTC CASSLGARGEGYTF TRBV12-3*01,TRBV12-4*01 TRBJ1-2*01 7.0 167.0 _CASSLGARGEGYTF 1 4555 BZLF1-190-197 EBV 0.77 2156 BZLF1-190-197 100 4455 10 EBV BZLF1 RAKFKQLL effector memory T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-B*08:01 B2M MHCI -10570 chip0423_688263 7.4 9.72 Chip2 healthy_3 healthy TGCAGTGCGCCGGGAACAGGGGCGGACACTGGAAACACCATATATTTT CSAPGTGADTGNTIYF TRBV20-1*01 TRBJ1-3*01 61.0 2199.0 _CSAPGTGADTGNTIYF 1 6603 NP44-52 FLU 0.76 474 NP44-52 93 6510 8 InfluenzaA NP CTELKLSDY effector memory T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*01:01 B2M MHCI -10571 chip0423_454766 11.4 8.76 Chip2 T1D_5 T1D TGTGCAGCAAGTGAAACCTCCTACGACAAGGTGATATTT CAASETSYDKVIF TRAV13-1*01 TRAJ50*01 30.0 2039.0 TGTGCCAGCAGCTTATTGGGGCGGTCCACTGAAGCTTTCTTT CASSLLGRSTEAFF TRBV7-9*01 TRBJ1-1*01 1.0 13.0 CAASETSYDKVIF_CASSLLGRSTEAFF 1 3648 BZLF1-190-197 EBV 1.0 2156 NEG 90 3558 10 EBV BZLF1 RAKFKQLL effector memory T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-B*08:01 B2M MHCI -10572 chip0423_65022 11.69 7.57 Chip2 T1D_5 T1D TGTGCCAGCAGCTATCTACAGGGGATGAATTCACCCCTCCACTTT CASSYLQGMNSPLHF TRBV7-2*01 TRBJ1-6*01 63.0 1829.0 _CASSYLQGMNSPLHF 4 2818 BZLF1-190-197 EBV 0.5 2156 NEG 104 2714 10 EBV BZLF1 RAKFKQLL effector memory T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-B*08:01 B2M MHCI -10573 chip0423_189530 -4.03 11.22 Chip2 healthy_3 healthy TGTGCTACGGACGGGAACTATGGTCAGAATTTTGTCTTT CATDGNYGQNFVF TRAV17*01 TRAJ26*01 1.0 43.0 TGTGCCAGCAGCTTATACGCAGCTTACAATGAGCAGTTCTTC CASSLYAAYNEQFF TRBV11-3*01 TRBJ2-1*01 6.0 408.0 CATDGNYGQNFVF_CASSLYAAYNEQFF 1 4416 GAD65-114-122 GAD65 0.54 63 NEG 70 4346 1 HomoSapiens GAD65 VMNILLQYV Naive T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*02:01 B2M MHCI -10574 chip0423_204631 6.27 14.29 Chip2 healthy_3 healthy TGTGCAGAGACGGGATCTAACCAGGCAGGCACTGCTCTGATCTTT CAETGSNQAGTALIF TRAV13-2*01 TRAJ15*01 44.0 1903.0 TGCGCCAGCAGCCAAGATGGGTACGGGGGGGATCAGCCCCAGCATTTT CASSQDGYGGDQPQHF TRBV4-1*01 TRBJ1-5*01 5.0 116.0 CAETGSNQAGTALIF_CASSQDGYGGDQPQHF 3 5984 NP44-52 FLU 0.67 474 NP44-52 106 5878 7 InfluenzaA NP CTELKLSDY transitional T cells between effector and memory populations PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*01:01 B2M MHCI -10575 chip0423_154455 -2.75 9.13 Chip2 T1D_6 T1D TGTGCCAGCAGTTTGAGCCAGAACACTGAAGCTTTCTTT CASSLSQNTEAFF TRBV27*01 TRBJ1-1*01 26.0 1463.0 _CASSLSQNTEAFF 1 7136 PGT-178 PGT 0.49 1480 PGT-178 82 7054 2 HomoSapiens PGT LLAGIGTVPI Naive T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*02:01 B2M MHCI -10576 chip0423_92690 4.97 11.93 Chip2 healthy_4 healthy _ 6746 3757 M1 FLU 1.0 1250 NEG 96 3661 6 InfluenzaA M1 GILGFVFTL central memory T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*02:01 B2M MHCI -10577 chip0423_220945 9.79 13.13 Chip2 T1D_4 T1D TGTGCTCTCGTGAATTATGGAGGAAGCCAAGGAAATCTCATCTTT CALVNYGGSQGNLIF TRAV19*01 TRAJ42*01 70.0 2297.0 TGTGCCGTCTCGAGGGCCGGAGCCTACGAGCAGTACTTC CAVSRAGAYEQYF TRBV28*01 TRBJ2-7*01 3.0 122.0 CALVNYGGSQGNLIF_CAVSRAGAYEQYF 1 2817 EBV-LMP1-1 EBV 1.0 237 NEG 83 2734 6 EBV LMP1 YLLEMLWRL central memory T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*02:01 B2M MHCI -10578 chip0423_513968 10.55 11.14 Chip2 healthy_4 healthy TGCAGCGTTGGCGCAGGGGGAACTAATGAAAAACTGTTTTTT CSVGAGGTNEKLFF TRBV29-1*01 TRBJ1-4*01 63.0 2774.0 _CSVGAGGTNEKLFF 51 3667 EBV-BLMF1 EBV 0.9 2531 NEG 88 3579 9 EBV BLMF1 GLCTLVAML effector memory T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*02:01 B2M MHCI -10579 chip0423_57760 10.99 11.4 Chip2 healthy_4 healthy _ 6746 2430 BZLF1-190-197 EBV 0.8 2156 NEG 95 2335 9 EBV BZLF1 RAKFKQLL effector memory T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-B*08:01 B2M MHCI -10580 chip0423_879860 11.16 8.27 Chip2 healthy_4 healthy TGTGCCAGCAGCTCCGGACAGGCCTACGAGCAGTACTTC CASSSGQAYEQYF TRBV7-8*01 TRBJ2-7*01 10.0 471.0 _CASSSGQAYEQYF 49 4374 EBNA3A-193-201 EBV 0.71 1022 NEG 88 4286 10 EBV EBNA3A FLRGRAYGL effector memory T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-B*08:01 B2M MHCI -10581 chip0423_750325 16.05 11.47 Chip2 healthy_3 healthy TGTGCCAGCTGCCGGGACGGGACCTACGAGCAGTACTTC CASCRDGTYEQYF TRBV10-3*01 TRBJ2-7*01 19.0 1021.0 _CASCRDGTYEQYF 5 3039 NP44-52 FLU 0.8 474 NP44-52 84 2955 12 InfluenzaA NP CTELKLSDY effector T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*01:01 B2M MHCI -10582 chip0423_849548 -4.0 8.81 Chip2 healthy_3 healthy TGTTCGGGGTCTCCCGAGGCGCTCTTGTTT CSGSPEALLF TRAV27*01 TRAJ34*01 5.0 597.0 TGCGCCAGCAGCTTGTGGTTGGGAACGGCATACGAGCAGTACTTC CASSLWLGTAYEQYF TRBV5-1*01 TRBJ2-7*01 25.0 1426.0 CSGSPEALLF_CASSLWLGTAYEQYF 1 6028 ZNT8-VTD-9 ZNT8 0.96 65 ZNT8-VTD-9 84 5944 2 HomoSapiens ZNT8 VTDAAHLLI Naive T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*01:01 B2M MHCI -10583 chip0423_630384 5.43 9.7 Chip2 healthy_4 healthy TGCGCCAGCAGCTCGGACGGCATGAACACTGAAGCTTTCTTT CASSSDGMNTEAFF TRBV10-2*01 TRBJ1-1*01 34.0 1758.0 _CASSSDGMNTEAFF 10 3002 EBV-LMP2A EBV 0.79 700 NEG 98 2904 6 EBV LMP2A CLGGLLTMV central memory T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*02:01 B2M MHCI -10584 chip0423_284663 0.75 8.68 Chip2 healthy_3 healthy TGTGCCAGCAGCGTAGAGTCCGGGGAGCTGTTTTTT CASSVESGELFF TRBV9*01 TRBJ2-2*01 1.0 76.0 _CASSVESGELFF 1 6615 MART1-ALA MART1 0.43 269 NEG 101 6514 4 HomoSapiens MART1 ALAGIGILTV Naive T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*02:01 B2M MHCI -10585 chip0423_421366 8.05 10.95 Chip2 T1D_6 T1D TGCGCCAGCAGTGACATTAGGGAGGGGCAGGGTGAAGCTTTCTTT CASSDIREGQGEAFF TRBV10-2*01 TRBJ1-1*01 5.0 233.0 _CASSDIREGQGEAFF 37 7386 EBNA3A-158-166 EBV 0.86 444 NEG 95 7291 7 EBV EBNA3A QAKWRLQTL transitional T cells between effector and memory populations PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-B*08:01 B2M MHCI -10586 chip0423_377678 -4.74 9.76 Chip2 T1D_6 T1D TGTGCCAGTAGTATCTGGCGGTTGACCACTGAAGCTTTCTTT CASSIWRLTTEAFF TRBV19*01 TRBJ1-1*01 14.0 350.0 _CASSIWRLTTEAFF 1 5226 GFAP-ALD-9 GFAP 0.85 11 GFAP-ALD-9 75 5151 2 HomoSapiens GFAP ALDIEIATY Naive T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*01:01 B2M MHCI -10587 chip0423_149985 5.74 12.36 Chip2 healthy_3 healthy TGTGCAGGAGGGCATGGAGGAAGCCAAGGAAATCTCATCTTT CAGGHGGSQGNLIF TRAV27*01 TRAJ42*01 14.0 415.0 TGTGCCAGTAGTACAAGTGGGGCCAATCAGCCCCAGCATTTT CASSTSGANQPQHF TRBV19*01 TRBJ1-5*01 19.0 615.0 CAGGHGGSQGNLIF_CASSTSGANQPQHF 1 6729 M1 FLU 0.93 1250 NEG 93 6636 7 InfluenzaA M1 GILGFVFTL transitional T cells between effector and memory populations PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*02:01 B2M MHCI -10588 chip0423_877180 4.89 9.36 Chip2 healthy_3 healthy TGTGCCGTGCGCGACTACAAGCTCAGCTTT CAVRDYKLSF TRAV12-2*01 TRAJ20*01 1.0 133.0 TGCAGTGCTAGAGGCGTTACTAGCTCGAGGGGGGTTAATGAGCAGTTCTTC CSARGVTSSRGVNEQFF TRBV20-1*01 TRBJ2-1*01 6.0 281.0 CAVRDYKLSF_CSARGVTSSRGVNEQFF 1 3881 PGT-178 PGT 0.64 1480 NEG 83 3798 6 HomoSapiens PGT LLAGIGTVPI central memory T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*02:01 B2M MHCI -10589 chip0423_715520 11.73 12.92 Chip2 healthy_3 healthy _ 6746 2419 NP44-52 FLU 0.79 474 NEG 73 2346 11 InfluenzaA NP CTELKLSDY effector T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*01:01 B2M MHCI -10590 chip0423_483979 11.54 6.53 Chip2 T1D_4 T1D _ 6746 4521 EBV-LMP1-1 EBV 0.62 237 NEG 90 4431 10 EBV LMP1 YLLEMLWRL effector memory T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*02:01 B2M MHCI -10591 chip0423_456405 12.63 7.24 Chip2 T1D_5 T1D TGTGCAGCAAGTGAAACCTCCTACGACAAGGTGATATTT CAASETSYDKVIF TRAV13-1*01 TRAJ50*01 41.0 2638.0 CAASETSYDKVIF_ 51 3705 BZLF1-190-197 EBV 0.8 2156 NEG 101 3604 10 EBV BZLF1 RAKFKQLL effector memory T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-B*08:01 B2M MHCI -10592 chip0423_871401 10.59 11.29 Chip2 healthy_4 healthy TGTGCCAGCAGCCTCATACGGGGGACCGGGGAGCTGTTTTTT CASSLIRGTGELFF TRBV3-1*01 TRBJ2-2*01 7.0 394.0 _CASSLIRGTGELFF 3 3500 BZLF1-190-197 EBV 1.0 2156 NEG 107 3393 9 EBV BZLF1 RAKFKQLL effector memory T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-B*08:01 B2M MHCI -10593 chip0423_517383 12.78 6.39 Chip2 healthy_3 healthy TGTGCCAGCAGTGGTACACCCTTCTCCTACGAGCAGTACTTC CASSGTPFSYEQYF TRBV6-1*01 TRBJ2-7*01 14.0 715.0 _CASSGTPFSYEQYF 2 5673 GAD65-114-122 GAD65 0.76 63 GAD65-114-122 93 5580 10 HomoSapiens GAD65 VMNILLQYV effector memory T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*02:01 B2M MHCI -10594 chip0423_69281 -3.79 9.04 Chip2 T1D_4 T1D _ 6746 4306 PGT-178 PGT 0.56 1480 NEG 90 4216 2 HomoSapiens PGT LLAGIGTVPI Naive T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*02:01 B2M MHCI -10595 chip0423_874196 -4.01 11.37 Chip2 healthy_3 healthy _ 6746 3975 NP44-52 FLU 0.8 474 NEG 93 3882 1 InfluenzaA NP CTELKLSDY Naive T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*01:01 B2M MHCI -10596 chip0423_486294 15.61 9.88 Chip2 healthy_4 healthy TGCGCCAGCAGCCAAGCCCCGGGACAGCGCACCGGGGAGCTGTGTTTT CASSQAPGQRTGELCF TRBV4-1*01 TRBJ2-2*01 3.0 91.0 _CASSQAPGQRTGELCF 1 3479 BZLF1-190-197 EBV 0.5 2156 NEG 94 3385 12 EBV BZLF1 RAKFKQLL effector T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-B*08:01 B2M MHCI -10597 chip0423_41870 6.53 11.37 Chip2 healthy_3 healthy TGTGCTGTGCCCAATGCATCAGGAGGAAGCTACATACCTACATTT CAVPNASGGSYIPTF TRAV2*01 TRAJ6*01 45.0 1758.0 CAVPNASGGSYIPTF_ 1 6304 NP44-52 FLU 0.64 474 NP44-52 83 6221 7 InfluenzaA NP CTELKLSDY transitional T cells between effector and memory populations PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*01:01 B2M MHCI -10598 chip0423_519374 12.69 8.76 Chip2 T1D_4 T1D TGTGCCAGCAGCCAAGTCAACAACCCGGGGGATGGCTACACCTTC CASSQVNNPGDGYTF TRBV14*01 TRBJ1-2*01 10.0 326.0 _CASSQVNNPGDGYTF 94 3000 EBNA3A-158-166 EBV 0.62 444 NEG 89 2911 10 EBV EBNA3A QAKWRLQTL effector memory T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-B*08:01 B2M MHCI -10599 chip0423_489043 5.43 9.78 Chip2 T1D_4 T1D TGCAGTGCCATCGAATTCCGGGACCCTAATCAGCCCCAGCATTTT CSAIEFRDPNQPQHF TRBV20-1*01 TRBJ1-5*01 5.0 123.0 _CSAIEFRDPNQPQHF 3 4344 EBV-LMP1-1 EBV 0.72 237 NEG 99 4245 6 EBV LMP1 YLLEMLWRL central memory T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*02:01 B2M MHCI -10600 chip0423_142779 11.71 7.88 Chip2 healthy_4 healthy _ 6746 3355 EBNA3A-193-201 EBV 0.91 1022 NEG 117 3238 10 EBV EBNA3A FLRGRAYGL effector memory T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-B*08:01 B2M MHCI -10601 chip0423_96987 11.79 7.28 Chip2 T1D_5 T1D TGTGCCAGCAGCTCACTTACGAGGAATTCACCCCTCCACTTT CASSSLTRNSPLHF TRAV36/DV7*01 TRAJ11*01 3.0 10.0 TGTGCCAGCAGCTCACTTACGAGGAATTCACCCCTCCACTTT CASSSLTRNSPLHF TRBV7-9*01 TRBJ1-6*01 41.0 1939.0 CASSSLTRNSPLHF_CASSSLTRNSPLHF 1 3782 BZLF1-190-197 EBV 0.59 2156 BZLF1-190-197 91 3691 10 EBV BZLF1 RAKFKQLL effector memory T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-B*08:01 B2M MHCI -10602 chip0423_100627 14.3 7.79 Chip2 T1D_6 T1D TGTGCCAGCAGCTTGGGACAGGCCTACGCGCAGTACTTC CASSLGQAYAQYF TRBV7-8*01 TRBJ2-7*01 8.0 661.0 _CASSLGQAYAQYF 1 4174 EBNA3A-193-201 EBV 0.71 1022 NEG 98 4076 10 EBV EBNA3A FLRGRAYGL effector memory T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-B*08:01 B2M MHCI -10603 chip0423_457086 -5.12 9.88 Chip2 healthy_3 healthy TGTGCAGAGAAACAAGCCAAGGAAATCTCATCTTT CAEKQgc?QGNLIF TRAV13-2*01 TRAJ42*01 19.0 1396.0 CAEKQgc?QGNLIF_ 1 3962 PGT-178 PGT 0.41 1480 NEG 82 3880 2 HomoSapiens PGT LLAGIGTVPI Naive T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*02:01 B2M MHCI -10604 chip0423_423136 -3.0 14.16 Chip2 T1D_5 T1D _ 6746 2700 ZNT8-YAK-9 ZNT8 0.83 59 NEG 93 2607 1 HomoSapiens ZNT8 YAKWKLCSA Naive T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-B*08:01 B2M MHCI -10605 chip0423_320407 10.04 10.26 Chip2 T1D_5 T1D TGTGCAGCGGCGGAAACCTCCTACGACAAGGTGATATTT CAAAETSYDKVIF TRAV13-1*01 TRAJ50*01 2.0 186.0 TGTGCCAGCCAACTAGCGGGAGGCACCGGGGAGCTGTTTTTT CASQLAGGTGELFF TRBV24-1*01 TRBJ2-2*01 11.0 496.0 CAAAETSYDKVIF_CASQLAGGTGELFF 131 3310 BZLF1-190-197 EBV 0.83 2156 NEG 87 3223 9 EBV BZLF1 RAKFKQLL effector memory T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-B*08:01 B2M MHCI -10606 chip0423_171005 -3.04 8.94 Chip2 T1D_5 T1D TGTGCCAGCAGCTTACGGGGTATAAATGAGCAGTTCTTC CASSLRGINEQFF TRBV7-8*01 TRBJ2-1*01 42.0 2169.0 _CASSLRGINEQFF 1 5899 GAD2-MMI-8 GAD65 0.5 40 NEG 88 5811 2 HomoSapiens GAD2 MMIARFKM Naive T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-B*08:01 B2M MHCI -10607 chip0423_557246 14.55 10.13 Chip2 T1D_6 T1D TGCAGCGTGGGGACAGGGGGCACTAATGAAAAACTGTTTTTT CSVGTGGTNEKLFF TRBV29-1*01 TRBJ1-4*01 5.0 130.0 _CSVGTGGTNEKLFF 638 3452 EBV-BLMF1 EBV 0.43 2531 NEG 104 3348 12 EBV BLMF1 GLCTLVAML effector T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*02:01 B2M MHCI -10608 chip0423_512203 10.5 10.54 Chip2 healthy_3 healthy TGTGCAATGAGGAGGCGTGGCAACTTCAACAAGTTTTACTTT CAMRRRGNFNKFYF TRAV14/DV4*01 TRAJ21*01 3.0 119.0 TGCAGCGTTGTCGTGTCCGAACCGATATCCTACAATGAGCAGTTCTTC CSVVVSEPISYNEQFF TRBV29-1*01 TRBJ2-1*01 78.0 6252.0 CAMRRRGNFNKFYF_CSVVVSEPISYNEQFF 1 4765 EBV-BRLF1 EBV 0.76 1264 EBV-BRLF1 96 4669 9 EBV BRLF1 YVLDHLIVV effector memory T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*02:01 B2M MHCI -10609 chip0423_134463 -3.86 7.97 Chip2 healthy_5 healthy TGTGCCAGCAGCGGTAGTTTGGGGGTCGGCGATGCTGAAGCTTTCTTT CASSGSLGVGDAEAFF TRBV9*01 TRBJ1-1*01 5.0 144.0 _CASSGSLGVGDAEAFF 1 5088 NP413-421 FLU 0.59 16 NEG 74 5014 2 InfluenzaA NP ALKCKGFHV Naive T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-B*08:01 B2M MHCI -10610 chip0423_800366 10.02 9.09 Chip2 T1D_4 T1D TGCATCGTCAGAGAGGGAGGCGGTGCTGTCGGACTCGCCTTT CIVREGGGAVGLAF TRAV26-1*01 TRAJ45*01 2.0 139.0 CIVREGGGAVGLAF_ 1 4903 BZLF1-190-197 EBV 0.8 2156 BZLF1-190-197 88 4815 8 EBV BZLF1 RAKFKQLL effector memory T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-B*08:01 B2M MHCI -10611 chip0423_730735 -1.64 7.03 Chip2 T1D_5 T1D TGTGCAATGAGAGAGAGGACCTCAGGAACCTACAAATACATCTTT CAMRERTSGTYKYIF TRAV14/DV4*01 TRAJ40*01 1.0 58.0 TGTGCCAGCAGCACGCCGGGACTTAGCACAGATACGCAGTATTTT CASSTPGLSTDTQYF TRBV7-9*01 TRBJ2-3*01 44.0 1927.0 CAMRERTSGTYKYIF_CASSTPGLSTDTQYF 1 7708 Nef13-20 HIV 0.59 19 Nef13-20 86 7622 3 HIV-1 Nef WPTVRERM Naive T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-B*08:01 B2M MHCI -10612 chip0423_788209 -3.85 9.38 Chip2 T1D_6 T1D TGTGCTGTGATTGATGGCGAGGATCGCCACTATCAGTTTATCTGG CAVIDGEDRHYQFIW TRAV3*01 TRAJ33*01 4.0 109.0 TGTGCCAGCAGCTTGTGGACAGGGGGACGCACCGGGGAGCTGTTTTTT CASSLWTGGRTGELFF TRBV5-6*01 TRBJ2-2*01 47.0 1851.0 CAVIDGEDRHYQFIW_CASSLWTGGRTGELFF 1 7483 ROTA-VP2-1 ROTA 0.7 17 NEG 92 7391 2 RotavirusA VP2 SLISGMWLL Naive T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*02:01 B2M MHCI -10613 chip0423_183950 6.54 14.56 Chip2 healthy_3 healthy TGTGCTGTTCTCCCCTCTAAGGACTACAAGCTCAGCTTT CAVLPSKDYKLSF TRAV12-3*01 TRAJ20*01 3.0 242.0 TGTGCCAGCCGCTTAGCGGTCGGAGAAGGGCCCCAGCATTGT CASRLAVGEGPQHC TRBV7-9*01 TRBJ1-5*01 3.0 96.0 CAVLPSKDYKLSF_CASRLAVGEGPQHC 1 5507 NP44-52 FLU 0.8 474 NP44-52 97 5410 7 InfluenzaA NP CTELKLSDY transitional T cells between effector and memory populations PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*01:01 B2M MHCI -10614 chip0423_494026 -3.85 9.42 Chip2 T1D_6 T1D TGTGCCAGCAGCTTAAGACAGGGCGGACAAGAGACCCAGTACTTC CASSLRQGGQETQYF TRBV13*01 TRBJ2-5*01 22.0 1286.0 _CASSLRQGGQETQYF 1 6854 GAD2-MMI-8 GAD65 0.6 40 NEG 106 6748 2 HomoSapiens GAD2 MMIARFKM Naive T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-B*08:01 B2M MHCI -10615 chip0423_519222 10.98 10.97 Chip2 T1D_6 T1D _ 6746 3633 EBV-BRLF1 EBV 0.47 1264 NEG 100 3533 9 EBV BRLF1 YVLDHLIVV effector memory T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*02:01 B2M MHCI -10616 chip0423_668731 9.36 10.17 Chip2 healthy_4 healthy TGTGCAGCAAGTGAAACCTCCTACGACAAGGTGATATTT CAASETSYDKVIF TRAV13-1*01 TRAJ50*01 1.0 15.0 TGTGCCAGCAGGGTAGGCCGAGAACCCACCGGGGAGCTGTTTTTT CASRVGREPTGELFF TRBV3-1*01 TRBJ2-2*01 36.0 2179.0 CAASETSYDKVIF_CASRVGREPTGELFF 1 5018 BZLF1-190-197 EBV 0.63 2156 NEG 94 4924 9 EBV BZLF1 RAKFKQLL effector memory T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-B*08:01 B2M MHCI -10617 chip0423_494995 -3.18 12.86 Chip2 healthy_3 healthy TGTGCCAGCAGTTTAGGCGAAGCCTACGAGCAGTACTTC CASSLGEAYEQYF TRBV27*01 TRBJ2-7*01 1.0 58.0 _CASSLGEAYEQYF 1 3584 MART1-A28L MART1 0.9 84 NEG 96 3488 1 HomoSapiens MART1 ALGIGILTV Naive T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*02:01 B2M MHCI -10618 chip0423_477080 -3.05 13.64 Chip2 T1D_6 T1D TGTGCTGTGGGTGCTATAATCTCGGGAACCTCCTCATCCCTCTTT CAVGAIISGTSSSLF TRAV8-3*01 TRAJ40*01 16.0 641.0 TGTGCCAGCAGTTACTTTGCCAATGAGCAGTTCTTC CASSYFANEQFF TRBV6-2*01,TRBV6-3*01 TRBJ2-1*01 25.0 1900.0 CAVGAIISGTSSSLF_CASSYFANEQFF 1 4594 PGT-178 PGT 0.53 1480 NEG 81 4513 1 HomoSapiens PGT LLAGIGTVPI Naive T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*02:01 B2M MHCI -10619 chip0423_130969 -3.2 10.77 Chip2 T1D_5 T1D _ 6746 4578 EBNA3A-193-201 EBV 0.68 1022 EBNA3A-193-201 83 4495 3 EBV EBNA3A FLRGRAYGL Naive T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-B*08:01 B2M MHCI -10620 chip0423_824060 9.94 10.87 Chip2 T1D_5 T1D TGTGCCAGCAGCTCCTTAAGCGGGGGGGCAGGAAATGAGCAGTTCTTC CASSSLSGGAGNEQFF TRBV7-9*01 TRBJ2-1*01 21.0 1423.0 _CASSSLSGGAGNEQFF 33 2842 BZLF1-190-197 EBV 0.54 2156 NEG 85 2757 9 EBV BZLF1 RAKFKQLL effector memory T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-B*08:01 B2M MHCI -10621 chip0423_815120 5.06 12.17 Chip2 healthy_4 healthy TGCAGTGCCTGGACTCGCGACTCCTACAATGAGCAGTTCTTC CSAWTRDSYNEQFF TRBV20-1*01 TRBJ2-1*01 26.0 1766.0 _CSAWTRDSYNEQFF 1 4037 M1 FLU 0.5 1250 NEG 103 3934 6 InfluenzaA M1 GILGFVFTL central memory T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*02:01 B2M MHCI -10622 chip0423_400953 16.63 11.26 Chip2 T1D_6 T1D _ 6746 3451 M1 FLU 0.48 1250 M1 99 3352 12 InfluenzaA M1 GILGFVFTL effector T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*02:01 B2M MHCI -10623 chip0423_376082 7.53 12.12 Chip2 healthy_3 healthy TGTGCCAGCTGCCGGGCCGGGACCTACGAGCAGTACTTC CASCRAGTYEQYF TRBV10-3*01 TRBJ2-7*01 2.0 56.0 _CASCRAGTYEQYF 1 5255 NP44-52 FLU 0.83 474 NP44-52 73 5182 7 InfluenzaA NP CTELKLSDY transitional T cells between effector and memory populations PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*01:01 B2M MHCI -10624 chip0423_670356 -1.42 10.14 Chip2 T1D_4 T1D TGTGCCCCTACAGGAGGAGGTGCTGACGGACTCACCTTT CAPTGGGADGLTF TRAV12-2*01 TRAJ45*01 10.0 834.0 TGTGCCACCATAAAATCGACAGTGAGTGGCTATGGCTACACCTTC CATIKSTVSGYGYTF TRBV6-1*01 TRBJ1-2*01 27.0 785.0 CAPTGGGADGLTF_CATIKSTVSGYGYTF 1 5624 PGT-178 PGT 0.5 1480 PGT-178 106 5518 3 HomoSapiens PGT LLAGIGTVPI Naive T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*02:01 B2M MHCI -10625 chip0423_337218 6.62 10.15 Chip2 T1D_4 T1D _ 6746 6552 EBV-LMP1-1 EBV 0.71 237 NEG 101 6451 6 EBV LMP1 YLLEMLWRL central memory T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*02:01 B2M MHCI -10626 chip0423_122947 13.67 7.84 Chip2 T1D_5 T1D TGTGCAGCAACGGAAACCTCCTACGACAAGGTGATATTT CAATETSYDKVIF TRAV13-1*01 TRAJ50*01 17.0 1933.0 CAATETSYDKVIF_ 13 3167 BZLF1-190-197 EBV 0.46 2156 NEG 84 3083 10 EBV BZLF1 RAKFKQLL effector memory T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-B*08:01 B2M MHCI -10627 chip0423_812050 6.85 13.26 Chip2 healthy_4 healthy TGTGCCAGCAGTCCCTGGACAACGAACACCGGGGAGCTGTTTTTT CASSPWTTNTGELFF TRBV27*01 TRBJ2-2*01 30.0 1456.0 _CASSPWTTNTGELFF 4 2932 M1 FLU 0.8 1250 NEG 95 2837 7 InfluenzaA M1 GILGFVFTL transitional T cells between effector and memory populations PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*02:01 B2M MHCI -10628 chip0423_672362 -4.35 10.98 Chip2 healthy_4 healthy TGTGCCAGTAGTATGCTTGTGACTGGGGAAAAACTGTTTTTT CASSMLVTGEKLFF TRBV19*01 TRBJ1-4*01 6.0 205.0 _CASSMLVTGEKLFF 1 2806 PGT-178 PGT 0.82 1480 NEG 84 2722 1 HomoSapiens PGT LLAGIGTVPI Naive T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*02:01 B2M MHCI -10629 chip0423_198712 -4.24 10.1 Chip2 healthy_3 healthy TGTGCAATGAGAGGCCTTAATTCTGGGGGTTACCAGAAAGTTACCTTT CAMRGLNSGGYQKVTF TRAV14/DV4*01 TRAJ13*01 51.0 1768.0 TGTGCCAGCAGTCCACGGACTAGCGGGAGTGGAGAGACCCAGTACTTC CASSPRTSGSGETQYF TRBV28*01 TRBJ2-5*01 36.0 1241.0 CAMRGLNSGGYQKVTF_CASSPRTSGSGETQYF 1 5258 ZNT8-153-161 ZNT8 0.44 41 NEG 74 5184 2 HomoSapiens ZNT8 VVTGVLVYL Naive T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*02:01 B2M MHCI -10630 chip0423_100487 -4.91 9.24 Chip2 healthy_3 healthy TGTGCTTATTTTTCTGGAGCCAATAGTAAGCTGACATTT CAYFSGANSKLTF TRAV38-1*01 TRAJ56*01 42.0 2893.0 TGTGCCAGCAGTCCCGGACTAGCGGAGACGTACCAAGAGACCCAGTACTTC CASSPGLAETYQETQYF TRBV27*01 TRBJ2-5*01 26.0 645.0 CAYFSGANSKLTF_CASSPGLAETYQETQYF 1 5203 CVB3-P3A CVB 0.48 77 CVB3-P3A 71 5132 2 CoxsackievirusB P3A GIIYIIYKL Naive T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*02:01 B2M MHCI -10631 chip0423_787914 15.45 10.38 Chip2 healthy_4 healthy TGTGCTGTGGCCGATCAACGGACCTCTTATAACCCCGTCAAGCTCATCTTT CAVADQRTSYNPVKLIF TRAV2*01 TRAJ34*01 3.0 99.0 TGTGCTGTGGAGGATCACGGCACATCTTCTCTCACCGCCTAGCTCATCTTT CAVEDHGTSSLTA*LIF TRAV2*01 TRAJ34*01 2.0 12.0 0.2 CAVADQRTSYNPVKLIF_ 1 3759 BZLF1-190-197 EBV 0.71 2156 NEG 95 3664 12 EBV BZLF1 RAKFKQLL effector T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-B*08:01 B2M MHCI -10632 chip0423_714639 11.25 8.19 Chip2 healthy_4 healthy _ 6746 4228 BZLF1-190-197 EBV 0.88 2156 NEG 92 4136 10 EBV BZLF1 RAKFKQLL effector memory T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-B*08:01 B2M MHCI -10633 chip0423_400322 -3.04 8.08 Chip2 healthy_4 healthy TGTGCTGTGAGTGATCAATGGGGGTTCCCAGAAAGTTACCTTT CAVSDQW??gGSQKVTF TRAV8-6*01 TRAJ13*01 10.0 639.0 TGTGCCAGCAGTACCCTAGCGGGGGGTCTTAATGAGCAGTTCTTC CASSTLAGGLNEQFF TRBV27*01 TRBJ2-1*01 20.0 1887.0 CAVSDQW??gGSQKVTF_CASSTLAGGLNEQFF 1 5941 PGT-178 PGT 1.0 1480 NEG 115 5826 2 HomoSapiens PGT LLAGIGTVPI Naive T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*02:01 B2M MHCI -10634 chip0423_377173 -2.25 9.88 Chip2 healthy_3 healthy TGTGCTTCTTAACGGCCAGGGAGGGGGGGTGGCAACTATCAACTGACATTT CAS*RPGRGGGNYQLTF TRAV36/DV7*01 TRAJ53*01 83.0 1892.0 TGTGCCAGCAGCCCCTCGGGGGCCTACGAGCAGTACTTC CASSPSGAYEQYF TRBV11-1*01 TRBJ2-7*01 4.0 210.0 CAS*RPGRGGGNYQLTF_CASSPSGAYEQYF 1 5934 GAD65-536-545 GAD65 0.69 7 NEG 80 5854 4 HomoSapiens GAD65 RMMEYGTTMV Naive T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*02:01 B2M MHCI -10635 chip0423_879045 -3.32 9.0 Chip2 T1D_4 T1D TGTGCTTATATGCCCGGTAACCAGTTCTATTTT CAYMPGNQFYF TRAV38-1*01 TRAJ49*01 3.0 399.0 TGTGCCAGCAATGATGGCAGGGCCAATCAGCCCCAGCATTTT CASNDGRANQPQHF TRBV28*01 TRBJ1-5*01 11.0 496.0 CAYMPGNQFYF_CASNDGRANQPQHF 1 5667 ZNT8-16-24 ZNT8 0.79 39 ZNT8-16-24 79 5588 2 HomoSapiens ZNT8 KMYAFTLES Naive T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*02:01 B2M MHCI -10636 chip0423_666033 8.0 11.65 Chip2 healthy_3 healthy TGTGCCAGTAGTATCAGGAGCTCCTACGAGCAGTACTTC CASSIRSSYEQYF TRBV19*01 TRBJ2-7*01 5.0 496.0 _CASSIRSSYEQYF 36 6376 M1 FLU 0.42 1250 NEG 95 6281 7 InfluenzaA M1 GILGFVFTL transitional T cells between effector and memory populations PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*02:01 B2M MHCI -10637 chip0423_756655 15.2 12.76 Chip2 T1D_4 T1D TGTGCCAGCAGCTTAGCGGTCGGAGAAGGGCCCCAGCATTTT CASSLAVGEGPQHF TRBV7-9*01 TRBJ1-5*01 10.0 237.0 _CASSLAVGEGPQHF 113 2411 BZLF1-190-197 EBV 0.8 2156 NEG 122 2289 12 EBV BZLF1 RAKFKQLL effector T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-B*08:01 B2M MHCI -10638 chip0423_765822 -3.56 13.61 Chip2 T1D_6 T1D _ 6746 3214 ZNT8-115-123 ZNT8 0.86 74 NEG 85 3129 1 HomoSapiens ZNT8 LLSLFSLWL Naive T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*02:01 B2M MHCI -10639 chip0423_606145 -3.71 10.66 Chip2 T1D_4 T1D _ 6746 4919 PGT-178 PGT 0.61 1480 PGT-178 83 4836 2 HomoSapiens PGT LLAGIGTVPI Naive T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*02:01 B2M MHCI -10640 chip0423_466058 -2.9 14.16 Chip2 T1D_6 T1D TGTGCCCCGGATAACTATTGTGCGTGTTTTGTCTTT CAPDNYCACFVF TRAV12-2*01 TRAJ26*01 18.0 1223.0 TGCGCCAGCACCCCAGGGTCGACCCAGTACTTC CASTPGSTQYF TRBV10-2*01 TRBJ2-5*01 12.0 856.0 CAPDNYCACFVF_CASTPGSTQYF 1 2989 ROTA-VP2-1 ROTA 0.44 17 NEG 83 2906 1 RotavirusA VP2 SLISGMWLL Naive T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*02:01 B2M MHCI -10641 chip0423_866559 12.22 13.63 Chip2 T1D_4 T1D TGTGCCAGCAGCTTAGCGGTCGGAGAAGGGCCCCAGCATTTT CASSLAVGEGPQHF TRBV7-9*01 TRBJ1-5*01 39.0 1298.0 _CASSLAVGEGPQHF 113 2105 BZLF1-190-197 EBV 0.89 2156 NEG 96 2009 11 EBV BZLF1 RAKFKQLL effector T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-B*08:01 B2M MHCI -10642 chip0423_494818 -2.33 10.8 Chip2 T1D_6 T1D _ 6746 5061 ZNT8-115-123 ZNT8 0.7 74 NEG 84 4977 3 HomoSapiens ZNT8 LLSLFSLWL Naive T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*02:01 B2M MHCI -10643 chip0423_220743 -4.25 7.64 Chip2 T1D_4 T1D TGTGCCAGCAGCTTAGGCGTAGCGGGAGACTACAATGAGCAGTTCTTC CASSLGVAGDYNEQFF TRBV7-6*01 TRBJ2-1*01 41.0 2489.0 _CASSLGVAGDYNEQFF 1 5553 IAPP-STN-9 IAPP 0.92 48 NEG 88 5465 2 HomoSapiens IAPP STNVGSNTY Naive T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*01:01 B2M MHCI -10644 chip0423_139395 10.7 9.06 Chip2 T1D_5 T1D TGTGCCAGCAGCCTCCTGGGCGGGGGAAACACCATATATTTT CASSLLGGGNTIYF TRBV7-9*01 TRBJ1-3*01 10.0 311.0 _CASSLLGGGNTIYF 1 5068 BZLF1-190-197 EBV 0.44 2156 NEG 106 4962 10 EBV BZLF1 RAKFKQLL effector memory T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-B*08:01 B2M MHCI -10645 chip0423_317618 12.52 13.16 Chip2 healthy_4 healthy _ 6746 1827 BZLF1-190-197 EBV 1.0 2156 NEG 95 1732 11 EBV BZLF1 RAKFKQLL effector T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-B*08:01 B2M MHCI -10646 chip0423_152631 6.22 14.23 Chip2 healthy_3 healthy TGCGCCAGCAGCCAAGATGGACTAGCGGCAACTAGCACAGATACGCAGTATTTT CASSQDGLAATSTDTQYF TRBV4-1*01 TRBJ2-3*01 13.0 475.0 _CASSQDGLAATSTDTQYF 6 5446 NP44-52 FLU 0.52 474 NEG 97 5349 7 InfluenzaA NP CTELKLSDY transitional T cells between effector and memory populations PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*01:01 B2M MHCI -10647 chip0423_202673 -3.77 12.2 Chip2 healthy_3 healthy _ 6746 4167 PGT-178 PGT 0.62 1480 PGT-178 79 4088 1 HomoSapiens PGT LLAGIGTVPI Naive T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*02:01 B2M MHCI -10648 chip0423_96258 11.17 7.54 Chip2 T1D_5 T1D TGTGCAGCAAGCGAGACCTCCTACGACAAGGTGATATTT CAASETSYDKVIF TRAV13-1*01 TRAJ50*01 14.0 631.0 TGTGCCAGCAGTTTTACAGGACAAGTGAACACTGAAGCTTTCTTT CASSFTGQVNTEAFF TRBV12-3*01,TRBV12-4*01 TRBJ1-1*01 50.0 1114.0 CAASETSYDKVIF_CASSFTGQVNTEAFF 2 5666 BZLF1-190-197 EBV 0.75 2156 NEG 123 5543 10 EBV BZLF1 RAKFKQLL effector memory T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-B*08:01 B2M MHCI -10649 chip0423_261066 8.78 10.81 Chip2 healthy_4 healthy TGTGCCAGCAGGGTAGGCCGAGAACCCACCGGGGAGCTGTTTTTT CASRVGREPTGELFF TRBV3-1*01 TRBJ2-2*01 28.0 1748.0 _CASRVGREPTGELFF 13 4237 BZLF1-190-197 EBV 0.9 2156 BZLF1-190-197 87 4150 8 EBV BZLF1 RAKFKQLL effector memory T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-B*08:01 B2M MHCI -10650 chip0423_879179 4.95 9.97 Chip2 T1D_4 T1D _ 6746 3945 EBV-LMP2A EBV 0.61 700 NEG 78 3867 6 EBV LMP2A CLGGLLTMV central memory T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*02:01 B2M MHCI -10651 chip0423_770078 -4.47 7.51 Chip2 healthy_3 healthy TGTGCCGTGGTCCCCATCTGG CAVVPIW TRAV12-2*01 TRAJ33*01 1.0 72.0 TGTGCCAGCACCTTCTGTTGGCCTAATGAGCATCTGGTCTTT CASTFCWPNEHLVF TRBV7-6*01 TRBJ1-4*01 4.0 179.0 CAVVPIW_CASTFCWPNEHLVF 1 4564 PGT-178 PGT 0.64 1480 NEG 94 4470 2 HomoSapiens PGT LLAGIGTVPI Naive T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*02:01 B2M MHCI -10652 chip0423_601373 -2.79 13.59 Chip2 T1D_5 T1D TGTGCTGTGAGAGCCGTTTATGGTGGTGCTACAAACAAGCTCATCTTT CAVRAVYGGATNKLIF TRAV3*01 TRAJ32*01 38.0 1380.0 TGTGCCAGCAGCCCTAGACATTCTACGAATTCACCCCTCCACTTT CASSPRHSTNSPLHF TRBV3-1*01 TRBJ1-6*01 11.0 692.0 CAVRAVYGGATNKLIF_CASSPRHSTNSPLHF 1 3793 INS-MAL-8 INS 0.78 38 NEG 103 3690 1 HomoSapiens INS MALWMRLL Naive T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-B*08:01 B2M MHCI -10653 chip0423_316257 11.91 10.72 Chip2 T1D_4 T1D TGTGCTGTGAGTGATGGAGAAGGAGCCCAGAAGCTGGTATTT CAVSDGEGAQKLVF TRAV8-6*01 TRAJ54*01 37.0 1634.0 CAVSDGEGAQKLVF_ 12 3690 BZLF1-190-197 EBV 0.78 2156 NEG 108 3582 9 EBV BZLF1 RAKFKQLL effector memory T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-B*08:01 B2M MHCI -10654 chip0423_161942 -3.22 12.28 Chip2 healthy_4 healthy TGTGCAATGGATAGCAGCTATAAATTGATCTTC CAMDSSYKLIF TRAV12-3*01 TRAJ12*01 19.0 2018.0 TGTGCCAGCAGCTCCGACTCTGGAAACACCATATATTTT CASSSDSGNTIYF TRBV6-1*01 TRBJ1-3*01 34.0 1029.0 CAMDSSYKLIF_CASSSDSGNTIYF 1 4041 ZNT8-115-123 ZNT8 0.78 74 NEG 81 3960 1 HomoSapiens ZNT8 LLSLFSLWL Naive T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*02:01 B2M MHCI -10655 chip0423_792513 5.98 12.49 Chip2 healthy_3 healthy TGTGCCAGTAGCGATCTTAGACCGACAAGCTCCTACAATGAGCAGTTCTTC CASSDLRPTSSYNEQFF TRBV19*01 TRBJ2-1*01 34.0 933.0 _CASSDLRPTSSYNEQFF 1 6464 NP44-52 FLU 0.9 474 NP44-52 87 6377 7 InfluenzaA NP CTELKLSDY transitional T cells between effector and memory populations PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*01:01 B2M MHCI -10656 chip0423_699534 11.29 10.07 Chip2 healthy_4 healthy TGTGCTCCCGCCGCGAATTCAGGATACAGCACCCTCACCTTT CAPAANSGYSTLTF TRAV9-2*01 TRAJ11*01 17.0 1792.0 TGCATCCTTCCCCTAGCTGGTGGTACTAGCTATGGAAAGCTGACATTT CILPLAGGTSYGKLTF TRAV26-2*01 TRAJ52*01 12.0 592.0 0.33 TGTGCCAGCAGCTCCGGACAGGCCTACGAGCAGTACTTC CASSSGQAYEQYF TRBV7-8*01 TRBJ2-7*01 11.0 758.0 CAPAANSGYSTLTF_CASSSGQAYEQYF 1 3794 EBNA3A-193-201 EBV 0.91 1022 NEG 105 3689 9 EBV EBNA3A FLRGRAYGL effector memory T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-B*08:01 B2M MHCI -10657 chip0423_526815 16.23 11.37 Chip2 T1D_5 T1D _ 6746 2353 BZLF1-190-197 EBV 0.46 2156 NEG 85 2268 12 EBV BZLF1 RAKFKQLL effector T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-B*08:01 B2M MHCI -10658 chip0423_361201 7.27 11.62 Chip2 healthy_3 healthy TGTGCAATGAGAGAGGCCTTTTTTTCAGGAAACACACCTCTTGTCTTT CAMREAFFSGNTPLVF TRAV14/DV4*01 TRAJ29*01 29.0 2043.0 TGTGCTGTGAAGCCGAGAGGTGCTGACGGACTCACCTTT CAVKPRGADGLTF TRAV20*01 TRAJ45*01 20.0 2073.0 0.33 TGTGCCAGCAGCCTATCGGGATTGAACACCGGGGAGCTGTTTTTT CASSLSGLNTGELFF TRBV4-2*01 TRBJ2-2*01 53.0 2527.0 CAMREAFFSGNTPLVF_CASSLSGLNTGELFF 1 5469 MART1-A27L MART1 0.57 16 NEG 78 5391 7 HomoSapiens MART1 ELAGIGILTV transitional T cells between effector and memory populations PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*02:01 B2M MHCI -10659 chip0423_811430 10.85 9.04 Chip2 healthy_4 healthy _ 6746 3199 ZNT8-273-282 ZNT8 0.79 8 ZNT8-273-282 101 3098 10 HomoSapiens ZNT8 LLMEGVPKSL effector memory T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*02:01 B2M MHCI -10660 chip0423_534773 5.94 11.41 Chip2 T1D_6 T1D _ 6746 7678 EBNA3A-158-166 EBV 0.56 444 NEG 103 7575 6 EBV EBNA3A QAKWRLQTL central memory T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-B*08:01 B2M MHCI -10661 chip0423_46317 6.64 11.54 Chip2 T1D_6 T1D TGTGCCGTGAACGTCGAAGGCAACATGCTCACCTTT CAVNVEGNMLTF TRAV12-2*01 TRAJ39*01 31.0 2125.0 TGTGCCAGCAGTCGGAACCCGCAATCGAAGTACTTC CASSRNPQSKYF TRBV28*01 TRBJ2-7*01 37.0 2497.0 CAVNVEGNMLTF_CASSRNPQSKYF 1 6396 ROTA-VP6 ROTA 0.82 47 ROTA-VP6 97 6299 7 RotavirusA VP6 TLLANVTAV transitional T cells between effector and memory populations PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*02:01 B2M MHCI -10662 chip0423_122 7.28 11.78 Chip2 healthy_3 healthy _ 6746 6183 NP44-52 FLU 0.62 474 NP44-52 100 6083 7 InfluenzaA NP CTELKLSDY transitional T cells between effector and memory populations PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*01:01 B2M MHCI -10663 chip0423_7318 9.82 9.57 Chip2 healthy_3 healthy TGCAGCGTTGTCGTGTCCGAACCGATATCCTACAATGAGCAGTTCTTC CSVVVSEPISYNEQFF TRBV29-1*01 TRBJ2-1*01 102.0 6085.0 _CSVVVSEPISYNEQFF 1 4736 EBV-BRLF1 EBV 0.8 1264 EBV-BRLF1 94 4642 8 EBV BRLF1 YVLDHLIVV effector memory T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*02:01 B2M MHCI -10664 chip0423_678609 7.05 11.46 Chip2 T1D_5 T1D _ 6746 5717 BZLF1-190-197 EBV 0.86 2156 NEG 79 5638 7 EBV BZLF1 RAKFKQLL transitional T cells between effector and memory populations PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-B*08:01 B2M MHCI -10665 chip0423_459972 11.75 7.93 Chip2 T1D_4 T1D _ 6746 4262 EBNA3A-158-166 EBV 0.67 444 NEG 107 4155 10 EBV EBNA3A QAKWRLQTL effector memory T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-B*08:01 B2M MHCI -10666 chip0423_35644 13.16 10.5 Chip2 T1D_5 T1D _ 6746 4493 BZLF1-190-197 EBV 0.56 2156 NEG 87 4406 9 EBV BZLF1 RAKFKQLL effector memory T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-B*08:01 B2M MHCI -10667 chip0423_508618 11.3 9.36 Chip2 healthy_4 healthy TGTGCTGCGGAGGATCAAGGGAGATCTTATAACACCGACAAGCTCATCTTT CAAEDQGRSYNTDKLIF TRAV2*01 TRAJ34*01 71.0 1906.0 TGTGCCAGCAGCTTAAACGTGGGGGAGGGCGCAGGAAACACCATATATTTT CASSLNVGEGAGNTIYF TRBV7-6*01 TRBJ1-3*01 48.0 1502.0 CAAEDQGRSYNTDKLIF_CASSLNVGEGAGNTIYF 1 4580 BZLF1-190-197 EBV 1.0 2156 NEG 95 4485 10 EBV BZLF1 RAKFKQLL effector memory T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-B*08:01 B2M MHCI -10668 chip0423_421370 6.29 13.06 Chip2 healthy_3 healthy TGTGCCAGCAGTGAAATGTGGGGAGCACCCCTCCACTTT CASSEMWGAPLHF TRBV2*01 TRBJ1-6*01 3.0 90.0 _CASSEMWGAPLHF 14 5280 NP44-52 FLU 0.84 474 NP44-52 85 5195 7 InfluenzaA NP CTELKLSDY transitional T cells between effector and memory populations PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*01:01 B2M MHCI -10669 chip0423_43217 11.76 12.86 Chip2 healthy_4 healthy TGCGCCAGCAGCTGGGGACAGGGACCTACCTACGAGCAGTACTTC CASSWGQGPTYEQYF TRBV4-1*01 TRBJ2-7*01 2.0 98.0 _CASSWGQGPTYEQYF 5 1951 BZLF1-190-197 EBV 0.8 2156 NEG 94 1857 11 EBV BZLF1 RAKFKQLL effector T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-B*08:01 B2M MHCI -10670 chip0423_500954 -3.09 9.75 Chip2 T1D_5 T1D TGTGCTCCCCTATGCCTACTGGATGCTTCAAAACTATCTTT CAPLCLct?GCFKTIF TRAV16*01 TRAJ9*01 4.0 180.0 TGTGCCAGCAGAGGAGACAGGTTCAGGGGGGGCAATGAGCAGTTCTTC CASRGDRFRGGNEQFF TRBV6-1*01 TRBJ2-1*01 13.0 372.0 CAPLCLct?GCFKTIF_CASRGDRFRGGNEQFF 1 6190 GFAP-HLK-8 GFAP 0.68 28 NEG 105 6085 2 HomoSapiens GFAP HLKRNIVV Naive T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-B*08:01 B2M MHCI -10671 chip0423_482749 -3.16 12.56 Chip2 T1D_4 T1D TGTGCAATGGCTATATCTAACTTTGGAAATGAGAAATTAACCTTT CAMAISNFGNEKLTF TRAV12-3*01 TRAJ48*01 98.0 3149.0 CAMAISNFGNEKLTF_ 2 4536 PGT-178 PGT 0.55 1480 NEG 95 4441 1 HomoSapiens PGT LLAGIGTVPI Naive T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*02:01 B2M MHCI -10672 chip0423_742806 16.05 9.9 Chip2 healthy_4 healthy _ 6746 2380 BZLF1-190-197 EBV 1.0 2156 NEG 106 2274 12 EBV BZLF1 RAKFKQLL effector T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-B*08:01 B2M MHCI -10673 chip0423_634469 12.03 12.97 Chip2 T1D_5 T1D TGCATCCTCCCACTTGCTGGTGGTACTAGCTATGGAAAGCTGACATTT CILPLAGGTSYGKLTF TRAV26-2*01 TRAJ52*01 4.0 104.0 TGTGCCAGCTCCCAGTTGGGGGGGGTTTACAATGAGCAGTTCTTC CASSQLGGVYNEQFF TRBV7-9*01 TRBJ2-1*01 25.0 1372.0 CILPLAGGTSYGKLTF_CASSQLGGVYNEQFF 1 2036 BZLF1-190-197 EBV 0.6 2156 BZLF1-190-197 92 1944 11 EBV BZLF1 RAKFKQLL effector T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-B*08:01 B2M MHCI -10674 chip0423_28880 8.15 11.46 Chip2 T1D_4 T1D TGTGCAGCAAGCGACCGCCTTCCAGGAGGAAGCTACATACCTACATTT CAASDRLPGGSYIPTF TRAV13-1*01 TRAJ6*01 8.0 164.0 TGCAGTGCTACTAACCAGTACGACGGACCCGACACTGAAGCTTTCTTT CSATNQYDGPDTEAFF TRBV20-1*01 TRBJ1-1*01 24.0 937.0 CAASDRLPGGSYIPTF_CSATNQYDGPDTEAFF 21 4601 BZLF1-190-197 EBV 0.67 2156 NEG 103 4498 7 EBV BZLF1 RAKFKQLL transitional T cells between effector and memory populations PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-B*08:01 B2M MHCI -10675 chip0423_315862 11.82 11.02 Chip2 healthy_4 healthy _ 6746 2395 BZLF1-190-197 EBV 0.91 2156 NEG 80 2315 9 EBV BZLF1 RAKFKQLL effector memory T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-B*08:01 B2M MHCI -10676 chip0423_121579 11.65 7.56 Chip2 healthy_3 healthy TGTGCAGGACCACATAACTGACAGCTGGGGGAAATTGCAGTTT CAGPHN*??cSWGKLQF TRAV27*01 TRAJ24*01 46.0 2044.0 TGCGCCAGCAGTGATGACGGCATGAACACTGAAGCTTTCTTT CASSDDGMNTEAFF TRBV10-2*01 TRBJ1-1*01 32.0 1526.0 CAGPHN*??cSWGKLQF_CASSDDGMNTEAFF 1 4150 EBV-LMP2A EBV 0.79 700 NEG 86 4064 10 EBV LMP2A CLGGLLTMV effector memory T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*02:01 B2M MHCI -10677 chip0423_681716 5.27 9.55 Chip2 healthy_3 healthy _ 6746 4169 M1 FLU 0.48 1250 NEG 88 4081 6 InfluenzaA M1 GILGFVFTL central memory T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*02:01 B2M MHCI -10678 chip0423_818298 14.74 10.15 Chip2 healthy_5 healthy _ 6746 2383 LMP2A-CPL EBV 0.83 44 NEG 86 2297 12 EBV LMP2A CPLSKILL effector T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-B*08:01 B2M MHCI -10679 chip0423_689014 12.23 7.17 Chip2 healthy_3 healthy TGTGCCGCCTATAACCAGGGAGGAAAGCTTATCTTC CAAYNQGGKLIF TRAV12-2*01 TRAJ23*01 26.0 2212.0 CAAYNQGGKLIF_ 1 3444 PGT-178 PGT 0.57 1480 PGT-178 108 3336 10 HomoSapiens PGT LLAGIGTVPI effector memory T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*02:01 B2M MHCI -10680 chip0423_653459 -0.04 8.4 Chip2 healthy_5 healthy _ 6746 9643 NP44-52 FLU 0.58 474 NEG 87 9556 4 InfluenzaA NP CTELKLSDY Naive T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*01:01 B2M MHCI -10681 chip0423_631950 -3.07 14.01 Chip2 healthy_3 healthy TGTGCCGTAGCGCCCTATCAGTTAATCTGG CAVAPYQLIW TRAV12-2*01 TRAJ33*01 1.0 141.0 CAVAPYQLIW_ 1 2952 ZNT8-115-123 ZNT8 0.54 74 NEG 76 2876 1 HomoSapiens ZNT8 LLSLFSLWL Naive T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*02:01 B2M MHCI -10682 chip0423_541238 -3.44 12.52 Chip2 T1D_6 T1D TGTGCAATGACCTTATCTAACTTTGGAAATGAGAAATTAACCTTT CAMTLSNFGNEKLTF TRAV12-3*01 TRAJ48*01 37.0 1266.0 TGTGCAGCAAGTAAGAACACCGGTAACCAGTTCTATTTT CAASKNTGNQFYF TRAV13-1*01 TRAJ49*01 28.0 1329.0 0.37 TGCGCCAGCGCCCAGGGACAGGGACACTATGGCTACACCTTC CASAQGQGHYGYTF TRBV4-1*01 TRBJ1-2*01 27.0 1383.0 CAMTLSNFGNEKLTF_CASAQGQGHYGYTF 1 4493 PGT-178 PGT 0.88 1480 NEG 103 4390 1 HomoSapiens PGT LLAGIGTVPI Naive T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*02:01 B2M MHCI -10683 chip0423_461923 5.64 9.28 Chip2 T1D_4 T1D TGTGCTGTCCCTGGGGGGGGCCTCGGCCTTCTCCTCCTT CAVPGGGLGLLLL TRAV8-3*01 TRAJ42*01 6.0 246.0 TTTTCTGGTGCAGGAGGAAGCAAAGAAAACCTCATCCTT FSGAGGSKENLIL TRAV8-3*01 TRAJ42*01 3.0 27.0 0.25 TGTGCCAGCAGTTACTCAAGTACAGGGGAGTACTTC CASSYSSTGEYF TRBV6-2*01,TRBV6-3*01 TRBJ2-7*01 7.0 112.0 CAVPGGGLGLLLL_CASSYSSTGEYF 1 6676 EBV-LMP1-1 EBV 0.5 237 NEG 85 6591 6 EBV LMP1 YLLEMLWRL central memory T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*02:01 B2M MHCI -10684 chip0423_761778 13.29 11.57 Chip2 T1D_5 T1D TGTGCAGCTCAGGAAACCTCCTACGACAAGGTGATATTT CAAQETSYDKVIF TRAV13-1*01 TRAJ50*01 25.0 2009.0 CAAQETSYDKVIF_ 6 2434 BZLF1-190-197 EBV 0.5 2156 NEG 96 2338 9 EBV BZLF1 RAKFKQLL effector memory T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-B*08:01 B2M MHCI -10685 chip0423_600052 -3.93 10.31 Chip2 T1D_4 T1D TGTGCCAGCACCTTTCGCGGACAGGAGTACAATGAGCAGTTCTTC CASTFRGQEYNEQFF TRBV28*01 TRBJ2-1*01 20.0 1330.0 _CASTFRGQEYNEQFF 1 4649 ZNT8-VTD-9 ZNT8 0.83 65 ZNT8-VTD-9 89 4560 2 HomoSapiens ZNT8 VTDAAHLLI Naive T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*01:01 B2M MHCI -10686 chip0423_96852 11.04 8.84 Chip2 healthy_4 healthy TGTGCTGTGGAGGATCAAGGGAGATCTTATAACACCGACAAGCTCATCTTT CAVEDQGRSYNTDKLIF TRAV2*01 TRAJ34*01 39.0 664.0 CAVEDQGRSYNTDKLIF_ 15 5027 BZLF1-190-197 EBV 0.78 2156 NEG 92 4935 10 EBV BZLF1 RAKFKQLL effector memory T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-B*08:01 B2M MHCI -10687 chip0423_68822 6.71 14.09 Chip2 T1D_6 T1D TGTGCTGGGCCTCCTGGCTACACGGGCAAACTAATCCTT CAGPPGYTGKLIL TRAV27*01 TRAJ37*01 15.0 497.0 CAGPPGYTGKLIL_ 1 3677 M1 FLU 0.7 1250 NEG 92 3585 7 InfluenzaA M1 GILGFVFTL transitional T cells between effector and memory populations PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*02:01 B2M MHCI -10688 chip0423_594260 11.89 13.72 Chip2 T1D_4 T1D TGCATCGTCAGAGAGGGAGGAGGTGCTGACGGACTCACCTTT CIVREGGGADGLTF TRAV26-1*01 TRAJ45*01 12.0 650.0 CIVREGGGADGLTF_ 9 2168 BZLF1-190-197 EBV 0.78 2156 NEG 98 2070 11 EBV BZLF1 RAKFKQLL effector T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-B*08:01 B2M MHCI -10689 chip0423_617747 9.82 8.74 Chip2 T1D_4 T1D _ 6746 4422 EBNA3A-193-201 EBV 0.52 1022 NEG 106 4316 8 EBV EBNA3A FLRGRAYGL effector memory T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-B*08:01 B2M MHCI -10690 chip0423_782667 5.58 11.08 Chip2 T1D_6 T1D TGTGCCAGCAGCTTGGGACAGGCCTACGAGCAGTACTTC CASSLGQAYEQYF TRBV7-8*01 TRBJ2-7*01 6.0 322.0 _CASSLGQAYEQYF 175 6403 EBNA3A-193-201 EBV 0.94 1022 EBNA3A-193-201 96 6307 6 EBV EBNA3A FLRGRAYGL central memory T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-B*08:01 B2M MHCI -10691 chip0423_232643 -3.31 14.21 Chip2 T1D_4 T1D TGTGCAATGAGCCTATCTAACTTTGGAAATGAGAAATTAACCCTG CAMSLSNFGNEKLTL TRAV12-3*01 TRAJ48*01 46.0 2267.0 CAMSLSNFGNEKLTL_ 1 2866 PGT-178 PGT 0.65 1480 NEG 85 2781 1 HomoSapiens PGT LLAGIGTVPI Naive T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*02:01 B2M MHCI -10692 chip0423_570764 -2.17 8.26 Chip2 healthy_3 healthy TGTGCCACCAGTGACTCCGGGACAGGGGTTCACGAGCAGTACTTC CATSDSGTGVHEQYF TRBV24-1*01 TRBJ2-7*01 31.0 1933.0 _CATSDSGTGVHEQYF 1 5216 PGT-178 PGT 0.5 1480 PGT-178 87 5129 3 HomoSapiens PGT LLAGIGTVPI Naive T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*02:01 B2M MHCI -10693 chip0423_179993 6.55 12.95 Chip2 healthy_3 healthy TGTGCCAGTAGTAGCCGGGCTTCCTACGAGCAGTACTTC CASSSRASYEQYF TRBV19*01 TRBJ2-7*01 2.0 181.0 _CASSSRASYEQYF 1 4683 M1 FLU 0.45 1250 NEG 87 4596 7 InfluenzaA M1 GILGFVFTL transitional T cells between effector and memory populations PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*02:01 B2M MHCI -10694 chip0423_654835 -1.02 10.93 Chip2 T1D_5 T1D TGTGCCCACGGAGGAAGCCAAGGAAATCTCATCTTT CAHGGSQGNLIF TRAV24*01 TRAJ42*01 16.0 1286.0 CAHGGSQGNLIF_ 1 4962 GFAP-ALD-9 GFAP 0.79 11 GFAP-ALD-9 88 4874 3 HomoSapiens GFAP ALDIEIATY Naive T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*01:01 B2M MHCI -10695 chip0423_438789 5.0 11.71 Chip2 healthy_4 healthy TGTGCAGGAGCCTCAGGGACCTACAAATACATCTTT CAGASGTYKYIF TRAV27*01 TRAJ40*01 8.0 357.0 TGTGCTCTCCTACAGCTGTATTCAACTTCTACATCTTTTACTTT CALLQLYt?cNFYIFYF TRAV9-2*01 TRAJ21*01 13.0 539.0 0.41 TGTGCCAGCAGCGAGACAGGGGGCACACTTTCACCCCTCCACTTT CASSETGGTLSPLHF TRBV7-8*01 TRBJ1-6*01 13.0 537.0 CAGASGTYKYIF_CASSETGGTLSPLHF 1 3861 M1 FLU 0.78 1250 NEG 94 3767 6 InfluenzaA M1 GILGFVFTL central memory T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*02:01 B2M MHCI -10696 chip0423_198788 8.66 13.9 Chip2 healthy_3 healthy _ 6746 3103 NP44-52 FLU 0.88 474 NEG 88 3015 11 InfluenzaA NP CTELKLSDY effector T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*01:01 B2M MHCI -10697 chip0423_543355 10.5 11.29 Chip2 healthy_4 healthy TGTGCTGTGGAGGATCAAGGGAGATCTTATAACACCGACAAGCTCATCTTT CAVEDQGRSYNTDKLIF TRAV2*01 TRAJ34*01 1.0 23.0 CAVEDQGRSYNTDKLIF_ 15 3782 BZLF1-190-197 EBV 0.8 2156 NEG 85 3697 9 EBV BZLF1 RAKFKQLL effector memory T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-B*08:01 B2M MHCI -10698 chip0423_754578 6.77 13.43 Chip2 T1D_6 T1D TGTGCCAGTAGTATCCGATCGGGGCAGGCCTACACTGAAGCTTTCTTT CASSIRSGQAYTEAFF TRBV19*01 TRBJ1-1*01 30.0 962.0 _CASSIRSGQAYTEAFF 1 3631 M1 FLU 0.54 1250 NEG 86 3545 7 InfluenzaA M1 GILGFVFTL transitional T cells between effector and memory populations PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*02:01 B2M MHCI -10699 chip0423_595919 6.62 12.57 Chip2 healthy_3 healthy TGTACAGGCGGGGGCTCTAGCAACACAGGCAAACTAATCTTT CTGGGSSNTGKLIF TRAV27*01 TRAJ37*01 30.0 1381.0 TGTGCCAGTAGTACCCGCAGTGCCTACGAGCAGTACCTC CASSTRSAYEQYL TRBV19*01 TRBJ2-7*01 14.0 809.0 CTGGGSSNTGKLIF_CASSTRSAYEQYL 1 5350 M1 FLU 0.57 1250 NEG 90 5260 7 InfluenzaA M1 GILGFVFTL transitional T cells between effector and memory populations PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*02:01 B2M MHCI -10700 chip0423_48777 5.86 13.26 Chip2 healthy_4 healthy _ 6746 3712 M1 FLU 0.57 1250 NEG 86 3626 7 InfluenzaA M1 GILGFVFTL transitional T cells between effector and memory populations PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*02:01 B2M MHCI -10701 chip0423_430772 15.4 10.22 Chip2 healthy_4 healthy TGCAGCGTTGGCGCAGGGGGAACTAATGAAAAACTGTTTTTT CSVGAGGTNEKLFF TRBV29-1*01 TRBJ1-4*01 134.0 6127.0 _CSVGAGGTNEKLFF 51 3329 EBV-BLMF1 EBV 1.0 2531 NEG 90 3239 12 EBV BLMF1 GLCTLVAML effector T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*02:01 B2M MHCI -10702 chip0423_806003 13.84 13.36 Chip2 T1D_4 T1D TGTGCCGTGAGGGGACTTTACTTT CAVRGLYF TRAV12-2*01 TRAJ21*01 2.0 15.0 TGTGCCAGCAGCTTAGCGGTCGGAGAAGGGCCCCAGCATTTT CASSLAVGEGPQHF TRBV7-9*01 TRBJ1-5*01 24.0 957.0 CAVRGLYF_CASSLAVGEGPQHF 1 2200 BZLF1-190-197 EBV 0.9 2156 BZLF1-190-197 103 2097 12 EBV BZLF1 RAKFKQLL effector T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-B*08:01 B2M MHCI -10703 chip0423_543550 14.32 8.7 Chip2 T1D_5 T1D TGTGCAGAGATGGAAACCTCCTACGACAAGGTGATATTT CAEMETSYDKVIF TRAV5*01 TRAJ50*01 8.0 914.0 TGTGCCAGCACCCACCCCCAGGATGTGAACACCGGGGAGCTGTTTTTT CASTHPQDVNTGELFF TRBV7-9*01 TRBJ2-2*01 41.0 1593.0 CAEMETSYDKVIF_CASTHPQDVNTGELFF 8 1970 BZLF1-190-197 EBV 0.5 2156 NEG 98 1872 12 EBV BZLF1 RAKFKQLL effector T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-B*08:01 B2M MHCI -10704 chip0423_30905 5.63 10.21 Chip2 T1D_4 T1D TGTGCCAGCAATATCCGGGCAGGGGGCTCTTACGAGCAGTACTTC CASNIRAGGSYEQYF TRBV28*01 TRBJ2-7*01 26.0 1250.0 _CASNIRAGGSYEQYF 2 7442 EBV-LMP1-1 EBV 0.57 237 NEG 86 7356 6 EBV LMP1 YLLEMLWRL central memory T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*02:01 B2M MHCI -10705 chip0423_625357 13.28 13.17 Chip2 T1D_5 T1D _ 6746 2209 BZLF1-190-197 EBV 1.0 2156 NEG 118 2091 11 EBV BZLF1 RAKFKQLL effector T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-B*08:01 B2M MHCI -10706 chip0423_589548 -2.36 10.28 Chip2 T1D_5 T1D TGTGCCAGCGCGCCTCAGGCAAGACTAGCGGGGATTTACGAGCAGTACTTC CASAPQARLAGIYEQYF TRBV27*01 TRBJ2-7*01 6.0 198.0 _CASAPQARLAGIYEQYF 1 6146 ZNT8-YAY-8 ZNT8 0.52 54 NEG 88 6058 3 HomoSapiens ZNT8 YAYAKWKL Naive T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-B*08:01 B2M MHCI -10707 chip0423_326957 13.82 13.38 Chip2 healthy_4 healthy _ 6746 1479 EBV-BRLF1 EBV 0.94 1264 EBV-BRLF1 99 1380 12 EBV BRLF1 YVLDHLIVV effector T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*02:01 B2M MHCI -10708 chip0423_644017 -4.45 10.55 Chip2 T1D_6 T1D TGTGCAATGAGAGAGACGAATTCAGGGTACAGCACCCTCACCTTT CAMRETNSGYSTLTF TRAV14/DV4*01 TRAJ11*01 46.0 1929.0 CAMRETNSGYSTLTF_ 1 4750 EBV-LMP2A EBV 0.44 700 NEG 91 4659 2 EBV LMP2A CLGGLLTMV Naive T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*02:01 B2M MHCI -10709 chip0423_141052 -1.2 10.48 Chip2 T1D_5 T1D _ 6746 5603 ZNT8-VTD-9 ZNT8 0.92 65 ZNT8-VTD-9 92 5511 3 HomoSapiens ZNT8 VTDAAHLLI Naive T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*01:01 B2M MHCI -10710 chip0423_801322 11.05 9.13 Chip2 healthy_3 healthy TGTGCAATGAGCAAATCTAACTTTGGAAATGAGAAATTAACCTTT CAMSKSNFGNEKLTF TRAV12-3*01 TRAJ48*01 35.0 899.0 TGTGCCAGCAGCTTGGCTGGCGGGGAGATTGATGATACGCAGTTTTT CASSLAGgg?GD**YAVF TRBV5-6*01 TRBJ2-3*01 8.0 213.0 CAMSKSNFGNEKLTF_CASSLAGgg?GD**YAVF 1 6706 PGT-178 PGT 0.92 1480 NEG 96 6610 9 HomoSapiens PGT LLAGIGTVPI effector memory T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*02:01 B2M MHCI -10711 chip0423_310186 5.27 11.1 Chip2 healthy_3 healthy _ 6746 6527 PGT-178 PGT 1.0 1480 NEG 80 6447 6 HomoSapiens PGT LLAGIGTVPI central memory T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*02:01 B2M MHCI -10712 chip0423_828868 7.27 12.93 Chip2 T1D_4 T1D TGTGCCGTGAACCGCTTCTTGGCCGACAGAGGCTCAACCCTGGGGAGGCTATACTTT CAVNRFLADRGSTLGRLYF TRAV12-2*01 TRAJ18*01 8.0 299.0 TGCGCCAGCAGCCAAGAAGTCACAGATACGCAGTATTTT CASSQEVTDTQYF TRBV4-3*01 TRBJ2-3*01 15.0 645.0 CAVNRFLADRGSTLGRLYF_CASSQEVTDTQYF 4 3455 EBV-LMP1-1 EBV 0.69 237 NEG 97 3358 7 EBV LMP1 YLLEMLWRL transitional T cells between effector and memory populations PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*02:01 B2M MHCI -10713 chip0423_25770 11.8 13.09 Chip2 T1D_4 T1D TGTGCCAGCCGCCAAGTCACCACCCCGGGGGATGGCTACACCTTC CASRQVTTPGDGYTF TRBV14*01 TRBJ1-2*01 2.0 79.0 _CASRQVTTPGDGYTF 1 2498 EBNA3A-158-166 EBV 0.6 444 NEG 87 2411 11 EBV EBNA3A QAKWRLQTL effector T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-B*08:01 B2M MHCI -10714 chip0423_255447 5.13 9.4 Chip2 T1D_6 T1D _ 6746 4354 EBNA3A-193-201 EBV 0.66 1022 EBNA3A-193-201 107 4247 6 EBV EBNA3A FLRGRAYGL central memory T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-B*08:01 B2M MHCI -10715 chip0423_524124 -2.13 13.87 Chip2 healthy_4 healthy _ 6746 3612 PGT-178 PGT 1.0 1480 NEG 87 3525 1 HomoSapiens PGT LLAGIGTVPI Naive T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*02:01 B2M MHCI -10716 chip0423_530076 8.85 7.69 Chip2 T1D_5 T1D TGTGCCAGCAGCTTCACATCCAGCGGGGGGGTGGAGCAGTTCTTC CASSFTSSGGVEQFF TRBV7-9*01 TRBJ2-1*01 23.0 1029.0 _CASSFTSSGGVEQFF 3 8180 BZLF1-190-197 EBV 0.43 2156 NEG 98 8082 8 EBV BZLF1 RAKFKQLL effector memory T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-B*08:01 B2M MHCI -10717 chip0423_487882 7.65 12.86 Chip2 T1D_6 T1D _ 6746 3387 INS-WMR-8 INS 0.65 17 INS-WMR-8 90 3297 7 HomoSapiens INS WMRLLPLL transitional T cells between effector and memory populations PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-B*08:01 B2M MHCI -10718 chip0423_279830 12.51 12.66 Chip2 healthy_4 healthy TGTGCCAGCAGCTCCGGACAGGCCTACGAGCAGTACTTC CASSSGQAYEQYF TRBV7-8*01 TRBJ2-7*01 41.0 2544.0 _CASSSGQAYEQYF 49 1429 EBNA3A-193-201 EBV 1.0 1022 NEG 79 1350 10 EBV EBNA3A FLRGRAYGL effector memory T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-B*08:01 B2M MHCI -10719 chip0423_759201 5.34 11.25 Chip2 T1D_4 T1D TGTGCAGCTCCTCTACAGAGCTGCCGGCAACACGCTAACTTTT CAAPLQS??tAGNTLTF TRAV13-1*01 TRAJ17*01 2.0 20.0 TGTGCCAGCAGCCCCGGGGAGACGCGCGGCGAGCAGTACTTC CASSPGETRGEQYF TRBV5-6*01 TRBJ2-7*01 13.0 841.0 CAAPLQS??tAGNTLTF_CASSPGETRGEQYF 1 4864 EBV-LMP1-1 EBV 0.88 237 NEG 93 4771 6 EBV LMP1 YLLEMLWRL central memory T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*02:01 B2M MHCI -10720 chip0423_320033 10.57 11.14 Chip2 T1D_4 T1D TGTGCCAGCAGCTTGGCGGTCGGAGCATCGCCCCAGCATCTT CASSLAVGASPQHL TRBV7-9*01 TRBJ1-5*01 5.0 321.0 _CASSLAVGASPQHL 1 4035 BZLF1-190-197 EBV 0.91 2156 BZLF1-190-197 103 3932 9 EBV BZLF1 RAKFKQLL effector memory T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-B*08:01 B2M MHCI -10721 chip0423_107103 -4.2 12.26 Chip2 T1D_6 T1D _ 6746 4780 MART1-ALA MART1 0.67 269 NEG 84 4696 1 HomoSapiens MART1 ALAGIGILTV Naive T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*02:01 B2M MHCI -10722 chip0423_709994 11.12 12.05 Chip2 healthy_4 healthy TGTGTGGTGAACAATTTCCAACACTGACATGCGCTTT CVVNNF??cNTDMRF TRAV12-1*01 TRAJ43*01 26.0 2026.0 TGCAGTGCAACCGGGACAGGGGACTATGGCTACACCTTC CSATGTGDYGYTF TRBV20-1*01 TRBJ1-2*01 17.0 768.0 CVVNNF??cNTDMRF_CSATGTGDYGYTF 1 2551 EBV-BRLF1 EBV 1.0 1264 NEG 92 2459 9 EBV BRLF1 YVLDHLIVV effector memory T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*02:01 B2M MHCI -10723 chip0423_644728 9.76 13.48 Chip2 healthy_3 healthy TGCGCCAGCCGCGAGGAGGACGGGCCCCAGCATTTT CASREEDGPQHF TRBV9*01 TRBJ1-5*01 7.0 135.0 _CASREEDGPQHF 1 3403 NP44-52 FLU 0.63 474 NP44-52 82 3321 11 InfluenzaA NP CTELKLSDY effector T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*01:01 B2M MHCI -10724 chip0423_129519 -2.8 13.25 Chip2 healthy_3 healthy _ 6746 4054 G6PC2-LTS-10 IGRP 0.83 59 G6PC2-LTS-10 92 3962 1 HomoSapiens G6PC2 LTSLTILQLY Naive T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*01:01 B2M MHCI -10725 chip0423_495158 9.55 13.08 Chip2 healthy_3 healthy TGTGCTCTCCTCCCGGGAGGAGGAAACAAACTCACCTTT CALLPGGGNKLTF TRAV19*01 TRAJ10*01 13.0 1177.0 CALLPGGGNKLTF_ 1 3041 ZNT8-VTD-9 ZNT8 0.92 65 ZNT8-VTD-9 85 2956 6 HomoSapiens ZNT8 VTDAAHLLI central memory T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*01:01 B2M MHCI -10726 chip0423_303287 15.69 11.77 Chip2 healthy_4 healthy TGCAGTGCTAGAGATGAGACAGGGAACGGCTACACCTTC CSARDETGNGYTF TRBV20-1*01 TRBJ1-2*01 9.0 644.0 _CSARDETGNGYTF 6 1923 EBV-BLMF1 EBV 0.86 2531 NEG 98 1825 12 EBV BLMF1 GLCTLVAML effector T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*02:01 B2M MHCI -10727 chip0423_217336 -3.15 13.41 Chip2 healthy_3 healthy _ 6746 3587 CVB3-P3A CVB 0.56 77 NEG 75 3512 1 CoxsackievirusB P3A GIIYIIYKL Naive T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*02:01 B2M MHCI -10728 chip0423_430406 8.5 13.87 Chip2 healthy_3 healthy TGTGCTGTGGGGGAGAACTATGGTCAGAATTTTGTCTTT CAVGENYGQNFVF TRAV21*01 TRAJ26*01 2.0 49.0 TGTGCCAGCAGCCAAGGGTTTCGGACGCCCGAGGGTGGCTACACCTTC CASSQGFRTPEGGYTF TRBV3-1*01 TRBJ1-2*01 34.0 1562.0 CAVGENYGQNFVF_CASSQGFRTPEGGYTF 1 3485 NP44-52 FLU 0.78 474 NP44-52 70 3415 11 InfluenzaA NP CTELKLSDY effector T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*01:01 B2M MHCI -10729 chip0423_15088 12.47 12.97 Chip2 T1D_4 T1D TGCATCGTCAGAGAGGGCGGAGGTGCTGACGGACTCCCCTTT CIVREGGGADGLPF TRAV26-1*01 TRAJ45*01 17.0 694.0 TGTGCCAGCAGCTTAGCGGTCGGAGAAGGGCCCCAGCATTTT CASSLAVGEGPQHF TRBV7-9*01 TRBJ1-5*01 32.0 1191.0 CIVREGGGADGLPF_CASSLAVGEGPQHF 21 1744 BZLF1-190-197 EBV 1.0 2156 NEG 89 1655 11 EBV BZLF1 RAKFKQLL effector T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-B*08:01 B2M MHCI -10730 chip0423_648257 -0.87 6.53 Chip2 healthy_5 healthy _ 6746 6814 IAPP-NTY-9 IAPP 0.83 4 IAPP-NTY-9 83 6731 3 HomoSapiens IAPP NTYGKRNAV Naive T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-B*08:01 B2M MHCI -10731 chip0423_152661 7.44 12.34 Chip2 healthy_3 healthy TGTGCCAGCAGCCGGAGGGAAGGACAGGCCGAGAAATGGGAGCAGTTCTTC CASSRREGQAEKWEQFF TRBV3-1*01 TRBJ2-1*01 19.0 626.0 _CASSRREGQAEKWEQFF 2 5284 PB1-590-599 FLU 0.54 37 NEG 89 5195 7 InfluenzaA PB1 LVSDGGPNLY transitional T cells between effector and memory populations PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*01:01 B2M MHCI -10732 chip0423_859574 15.96 11.71 Chip2 healthy_4 healthy TGTGCCAGCAGGGTAGGCCGAGAACCCACCGGGGAGCTGTTTTTT CASRVGREPTGELFF TRBV3-1*01 TRBJ2-2*01 17.0 968.0 _CASRVGREPTGELFF 13 1668 BZLF1-190-197 EBV 0.8 2156 NEG 78 1590 12 EBV BZLF1 RAKFKQLL effector T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-B*08:01 B2M MHCI -10733 chip0423_129458 10.41 10.06 Chip2 healthy_3 healthy TGTGCCAGGCCGAGGGACAGGGGGATCACTGAGCAGTTCTTC CARPRDRGITEQFF TRBV6-2*01,TRBV6-3*01 TRBJ2-1*01 9.0 583.0 _CARPRDRGITEQFF 1 4541 ZNT8-VTD-9 ZNT8 0.99 65 ZNT8-VTD-9 99 4442 9 HomoSapiens ZNT8 VTDAAHLLI effector memory T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*01:01 B2M MHCI -10734 chip0423_116285 13.08 7.03 Chip2 T1D_5 T1D TGTGCGCGTCCCCCGGGCTACAAATACATCTTT CARPPGYKYIF TRAV9-2*01 TRAJ40*01 9.0 1318.0 TGTGCCAGCAGCTTAGCTCGGACTGAAGCTTTCTTT CASSLARTEAFF TRBV7-2*01 TRBJ1-1*01 20.0 967.0 CARPPGYKYIF_CASSLARTEAFF 1 2691 BZLF1-190-197 EBV 0.65 2156 NEG 106 2585 10 EBV BZLF1 RAKFKQLL effector memory T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-B*08:01 B2M MHCI -10735 chip0423_739054 -1.61 7.68 Chip2 healthy_3 healthy _ 6746 5173 PTPRN-180-188 PTPRN 0.79 18 NEG 74 5099 3 HomoSapiens PTPRN LLPPLLEHL Naive T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*02:01 B2M MHCI -10736 chip0423_234161 -4.11 9.76 Chip2 T1D_6 T1D TGTGCTCTGAGTTCTAACGACTACAAGCTCAGCTTT CALSSNDYKLSF TRAV19*01 TRAJ20*01 4.0 382.0 CALSSNDYKLSF_ 1 4822 NP140-148 FLU 0.45 102 NEG 92 4730 2 InfluenzaA NP HSNLNDATY Naive T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*01:01 B2M MHCI -10737 chip0423_537986 -2.49 10.73 Chip2 T1D_5 T1D TGTGCCCTCAGTGATGGGGTCCCTCAGCCCCAGCATTTT CALSDGVPQPQHF TRBV10-3*01 TRBJ1-5*01 18.0 1047.0 _CALSDGVPQPQHF 1 4409 NP140-148 FLU 0.97 102 NP140-148 77 4332 3 InfluenzaA NP HSNLNDATY Naive T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*01:01 B2M MHCI -10738 chip0423_296864 11.26 10.75 Chip2 healthy_4 healthy TGTGCCAGCAGCTCCGGACAGGCCTACAAGCAGTACTTC CASSSGQAYKQYF TRBV7-8*01 TRBJ2-7*01 14.0 849.0 _CASSSGQAYKQYF 2 2374 EBNA3A-193-201 EBV 0.7 1022 NEG 89 2285 9 EBV EBNA3A FLRGRAYGL effector memory T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-B*08:01 B2M MHCI -10739 chip0423_201480 -2.23 14.48 Chip2 healthy_3 healthy TGTGCTGTGTAGGGACAGCGTTGCAGGCATATCATCCTTT CAV*GQcg??ttAGISSF TRAV1-2*01 TRAJ27*01 10.0 829.0 TGTGCCAGCAGGTCCTCCCAGGGGGGAATCACCGGGGAGCTGTTTTTT CASRSSQGGITGELFF TRBV12-3*01,TRBV12-4*01 TRBJ2-2*01 13.0 333.0 CAV*GQcg??ttAGISSF_CASRSSQGGITGELFF 1 2695 ZNT8-VTD-9 ZNT8 1.0 65 NEG 85 2610 1 HomoSapiens ZNT8 VTDAAHLLI Naive T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*01:01 B2M MHCI -10740 chip0423_10579 -3.7 10.75 Chip2 T1D_4 T1D TGTGCCAGCAGCGAAGGGACAGCAACTAATGAAAAACTGTTTTTT CASSEGTATNEKLFF TRBV3-1*01 TRBJ1-4*01 73.0 2364.0 _CASSEGTATNEKLFF 1 6108 IGRP-215-223 IGRP 1.0 5 NEG 65 6043 2 HomoSapiens IGRP FLFAVGFYL Naive T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*02:01 B2M MHCI -10741 chip0423_700988 8.46 8.75 Chip2 healthy_4 healthy TGCATCCTTCCCCTAGCTGGTGGTACTAGCTATGGAAAGCTGACATTT CILPLAGGTSYGKLTF TRAV26-2*01 TRAJ52*01 77.0 3265.0 TGTGCCAGCAGCTCCGGACAGGCCTACGAGCAGTACCTC CASSSGQAYEQYL TRBV7-8*01 TRBJ2-7*01 14.0 807.0 CILPLAGGTSYGKLTF_CASSSGQAYEQYL 2 6409 EBNA3A-193-201 EBV 0.86 1022 EBNA3A-193-201 91 6318 8 EBV EBNA3A FLRGRAYGL effector memory T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-B*08:01 B2M MHCI -10742 chip0423_87351 14.37 11.05 Chip2 T1D_5 T1D TGTGCAATGAGAGAGGGCGAGGCTGGAGGCTTCAAAACTATCTTT CAMREGEAGGFKTIF TRAV14/DV4*01 TRAJ9*01 52.0 1969.0 TGTGCCAGCAGCTTATTCCAGGCTTCCTCCCTCTATGGCTACACCTTC CASSLFQASSLYGYTF TRBV7-8*01 TRBJ1-2*01 2.0 34.0 CAMREGEAGGFKTIF_CASSLFQASSLYGYTF 1 3055 BZLF1-190-197 EBV 0.7 2156 NEG 87 2968 12 EBV BZLF1 RAKFKQLL effector T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-B*08:01 B2M MHCI -10743 chip0423_373612 -2.77 11.59 Chip2 T1D_4 T1D TGTGCAATGTCGATATCTAACTTTGGAAATGAGAAATTAACCTTT CAMSISNFGNEKLTF TRAV12-3*01 TRAJ48*01 11.0 254.0 TGTGCCAGCAGCTTAGCGGGGGGGCCCGGAAACACCATATATTTT CASSLAGGPGNTIYF TRBV7-8*01 TRBJ1-3*01 2.0 46.0 CAMSISNFGNEKLTF_CASSLAGGPGNTIYF 1 5924 PGT-178 PGT 0.51 1480 PGT-178 82 5842 1 HomoSapiens PGT LLAGIGTVPI Naive T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*02:01 B2M MHCI -10744 chip0423_214256 11.06 7.92 Chip2 T1D_4 T1D TGTGCCGTCTGGAGGGACGGAGCCTACGAGCAGTACTTC CAVWRDGAYEQYF TRBV28*01 TRBJ2-7*01 13.0 1026.0 _CAVWRDGAYEQYF 12 5472 EBV-LMP1-1 EBV 0.44 237 NEG 90 5382 6 EBV LMP1 YLLEMLWRL central memory T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*02:01 B2M MHCI -10745 chip0423_109990 5.2 12.2 Chip2 healthy_4 healthy _ 6746 4398 M1 FLU 0.64 1250 NEG 86 4312 6 InfluenzaA M1 GILGFVFTL central memory T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*02:01 B2M MHCI -10746 chip0423_478804 11.3 8.78 Chip2 healthy_4 healthy _ 6746 3179 EBV-BRLF1 EBV 0.78 1264 NEG 96 3083 10 EBV BRLF1 YVLDHLIVV effector memory T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*02:01 B2M MHCI -10747 chip0423_805586 -3.63 12.45 Chip2 healthy_4 healthy TGCAGCGTTGTAGGCTCAACTGAAGCTTTCTTT CSVVGSTEAFF TRBV29-1*01 TRBJ1-1*01 78.0 7059.0 _CSVVGSTEAFF 1 4655 G6PC2-NLI-8 IGRP 1.0 32 NEG 79 4576 1 HomoSapiens G6PC2 NLIFKWIL Naive T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-B*08:01 B2M MHCI -10748 chip0423_481501 7.61 13.54 Chip2 healthy_3 healthy TGTGCTGTGAGTTATCATGCATCAGGAGGAAGCTACATACCTACATTT CAVSYHASGGSYIPTF TRAV1-2*01 TRAJ6*01 55.0 1586.0 TGCGCCAGCAGCCAAGATGGGTATCCGGCGGGAGAGGCGGCAGATACGTAGTATTTT CASSQDGYPAGEAADT*YF TRBV4-1*01 TRBJ2-3*01 4.0 173.0 CAVSYHASGGSYIPTF_CASSQDGYPAGEAADT*YF 1 4185 NP44-52 FLU 0.66 474 NP44-52 89 4096 7 InfluenzaA NP CTELKLSDY transitional T cells between effector and memory populations PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*01:01 B2M MHCI -10749 chip0423_472930 15.25 12.1 Chip2 healthy_4 healthy _ 6746 1716 BZLF1-190-197 EBV 1.0 2156 NEG 100 1616 12 EBV BZLF1 RAKFKQLL effector T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-B*08:01 B2M MHCI -10750 chip0423_882116 15.88 10.78 Chip2 healthy_4 healthy TGTGCCAGCAGCCAGACATTCCCGAACACCGGGGAGCTGTTTTTT CASSQTFPNTGELFF TRBV3-1*01 TRBJ2-2*01 43.0 2394.0 _CASSQTFPNTGELFF 12 2002 BZLF1-190-197 EBV 0.8 2156 NEG 72 1930 12 EBV BZLF1 RAKFKQLL effector T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-B*08:01 B2M MHCI -10751 chip0423_264431 12.18 8.75 Chip2 T1D_5 T1D TGTGCAGCAACGGAAACCTCCTACGACAAGGTGATATTT CAATETSYDKVIF TRAV13-1*01 TRAJ50*01 12.0 986.0 TGTGCCAGCAGCCTATTAGGAGTACGGGACAAGGAAAACGAGCAGTACTTC CASSLLGVRDKENEQYF TRBV11-1*01 TRBJ2-7*01 23.0 677.0 CAATETSYDKVIF_CASSLLGVRDKENEQYF 2 3189 BZLF1-190-197 EBV 0.57 2156 NEG 98 3091 10 EBV BZLF1 RAKFKQLL effector memory T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-B*08:01 B2M MHCI -10752 chip0423_18096 -2.89 8.49 Chip2 healthy_3 healthy TGTGCCAGCAGTCGACTAGCGGGAGGAGTAGAGACCCAGTACTTC CASSRLAGGVETQYF TRBV28*01 TRBJ2-5*01 16.0 693.0 _CASSRLAGGVETQYF 1 4815 PGT-178 PGT 0.71 1480 PGT-178 80 4735 2 HomoSapiens PGT LLAGIGTVPI Naive T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*02:01 B2M MHCI -10753 chip0423_572610 12.58 6.56 Chip2 T1D_6 T1D TGTAATGTTAAGGTTTGGGGGTGTCTATTGGCTGGTCTAT CNVKVWgg??gtVYWLVY TRAV8-4*01,TRAV8-2*01 TRAJ16*01 2.0 37.0 TGTGCCAGCAGCTTGGGACCGGCCTACGAGCAGTACTTC CASSLGPAYEQYF TRBV7-8*01 TRBJ2-7*01 8.0 143.0 CNVKVWgg??gtVYWLVY_CASSLGPAYEQYF 1 4313 EBNA3A-193-201 EBV 0.8 1022 NEG 118 4195 10 EBV EBNA3A FLRGRAYGL effector memory T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-B*08:01 B2M MHCI -10754 chip0423_99578 11.82 7.76 Chip2 T1D_5 T1D TGCAGCGTTGCACAGGGTTCGTTCGGCTACACCTTC CSVAQGSFGYTF TRBV29-1*01 TRBJ1-2*01 39.0 3243.0 _CSVAQGSFGYTF 1 3606 BZLF1-190-197 EBV 0.71 2156 NEG 100 3506 10 EBV BZLF1 RAKFKQLL effector memory T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-B*08:01 B2M MHCI -10755 chip0423_583149 7.01 10.52 Chip2 healthy_3 healthy TGTGCAGCAAGTTAGTCCAGTGAACAGAGATGACCGGATCATCTTT CAAS*SSga??acRDDRIIF TRAV13-1*01 TRAJ30*01 17.0 480.0 TGTGCCAGCAGCCCCCCAACTAGCGGGGGGGTCGGGATAGATACGCAGTATTTT CASSPPTSGGVGIDTQYF TRBV11-3*01 TRBJ2-3*01 1.0 10.0 CAAS*SSga??acRDDRIIF_CASSPPTSGGVGIDTQYF 1 5172 ZNT8-115-123 ZNT8 0.69 74 ZNT8-115-123 96 5076 7 HomoSapiens ZNT8 LLSLFSLWL transitional T cells between effector and memory populations PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*02:01 B2M MHCI -10756 chip0423_545753 -4.25 11.43 Chip2 healthy_3 healthy _ 6746 4945 MART1-A28L MART1 0.5 84 NEG 88 4857 1 HomoSapiens MART1 ALGIGILTV Naive T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*02:01 B2M MHCI -10757 chip0423_670215 11.81 10.64 Chip2 T1D_4 T1D TGCATTGTCAGCGCGGGAGGAGGTGCTGACGGGCTCACCTGT CIVSAGGGADGLTC TRAV26-1*01 TRAJ45*01 22.0 1929.0 TGTGCCAGCAGCTTAGCGGTCGGAGAAGGGCCCCAGCATTTT CASSLAVGEGPQHF TRBV7-9*01 TRBJ1-5*01 22.0 1090.0 CIVSAGGGADGLTC_CASSLAVGEGPQHF 1 4335 BZLF1-190-197 EBV 0.98 2156 BZLF1-190-197 99 4236 9 EBV BZLF1 RAKFKQLL effector memory T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-B*08:01 B2M MHCI -10758 chip0423_535414 -1.17 10.65 Chip2 T1D_5 T1D TGTGCTGTGGGTTTTTTGTACACAGGCTTTCTGACACTTGTATTT CAVGFLYTGFLTLVF TRAV8-3*01 TRAJ8*01 10.0 792.0 CAVGFLYTGFLTLVF_ 1 5284 G6PC2-LTS-10 IGRP 0.48 59 G6PC2-LTS-10 82 5202 3 HomoSapiens G6PC2 LTSLTILQLY Naive T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*01:01 B2M MHCI -10759 chip0423_355660 15.85 10.9 Chip2 healthy_4 healthy TGTGCCAGCAGCTCCGGACAGGCCTACGAGCAGTACTTC CASSSGQAYEQYF TRBV7-8*01 TRBJ2-7*01 6.0 247.0 _CASSSGQAYEQYF 49 2208 EBNA3A-193-201 EBV 1.0 1022 NEG 84 2124 12 EBV EBNA3A FLRGRAYGL effector T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-B*08:01 B2M MHCI -10760 chip0423_497922 -3.36 11.22 Chip2 T1D_5 T1D TGTGCAATGAGCGCTACCTCAGGCACCTACAAATACATCTTT CAMSATSGTYKYIF TRAV12-3*01 TRAJ40*01 51.0 1989.0 TGTGCCAGCAGCTCCCTCGGGCCCCCCGGGGAGCTGTTTTTT CASSSLGPPGELFF TRBV5-4*01 TRBJ2-2*01 3.0 69.0 CAMSATSGTYKYIF_CASSSLGPPGELFF 1 4377 INS-GSH-9 INS 0.41 19 NEG 77 4300 1 HomoSapiens INS GSHLVEALY Naive T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*01:01 B2M MHCI -10761 chip0423_319956 13.48 13.67 Chip2 T1D_5 T1D _ 6746 1879 BZLF1-190-197 EBV 0.45 2156 NEG 85 1794 11 EBV BZLF1 RAKFKQLL effector T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-B*08:01 B2M MHCI -10762 chip0423_672014 -1.52 8.79 Chip2 healthy_3 healthy TGTGCTGTCAGAGGGTATGGAGGAAGCCAAGGAAATCTCATCTTT CAVRGYGGSQGNLIF TRAV41*01 TRAJ42*01 60.0 2511.0 CAVRGYGGSQGNLIF_ 1 5624 HCVNS4B-1807-1816 HCV 0.44 74 NEG 89 5535 4 HCV NS4B LLFNILGGWV Naive T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*02:01 B2M MHCI -10763 chip0423_553299 -4.35 10.27 Chip2 healthy_3 healthy _ 6746 4719 MART1-A27L MART1 0.41 16 NEG 72 4647 2 HomoSapiens MART1 ELAGIGILTV Naive T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*02:01 B2M MHCI -10764 chip0423_518186 -0.97 10.63 Chip2 T1D_6 T1D TGTGCAAGGAGCGAGGGCGCGGCTGGGGGCTTCACACCTATCTTT CARSEGAAGGFTPIF TRAV14/DV4*01 TRAJ9*01 4.0 148.0 TGTGCCAGCAGTTACTCGTCAGGGAACACTGAAGCTTTCTTT CASSYSSGNTEAFF TRBV6-5*01 TRBJ1-1*01 18.0 660.0 CARSEGAAGGFTPIF_CASSYSSGNTEAFF 1 6152 EBV-LMP2A EBV 0.53 700 NEG 96 6056 3 EBV LMP2A CLGGLLTMV Naive T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*02:01 B2M MHCI -10765 chip0423_573542 12.29 13.49 Chip2 healthy_4 healthy TGTGCCAGCAGCTCCGGACAGGCCTACGAGCAGTACTTC CASSSGQAYEQYF TRBV7-8*01 TRBJ2-7*01 13.0 463.0 _CASSSGQAYEQYF 49 1624 EBNA3A-193-201 EBV 0.86 1022 NEG 94 1530 11 EBV EBNA3A FLRGRAYGL effector T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-B*08:01 B2M MHCI -10766 chip0423_513590 -1.75 7.66 Chip2 T1D_6 T1D TGTGCAGCAAGTGAAACCTCCTACGACAAGGTGATATTT CAASETSYDKVIF TRAV13-1*01 TRAJ50*01 3.0 275.0 TGTGCCAGCAGCTTGGTAGGGGGCACTGAAGCTTTCTTT CASSLVGGTEAFF TRBV6-1*01 TRBJ1-1*01 73.0 3629.0 CAASETSYDKVIF_CASSLVGGTEAFF 1 5775 NP225-233 FLU 0.83 23 NEG 94 5681 4 InfluenzaA NP ILKGKFQTA Naive T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-B*08:01 B2M MHCI -10767 chip0423_282495 6.09 9.14 Chip2 T1D_4 T1D _ 6746 7372 EBNA3A-158-166 EBV 0.6 444 NEG 99 7273 6 EBV EBNA3A QAKWRLQTL central memory T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-B*08:01 B2M MHCI -10768 chip0423_227486 8.32 13.87 Chip2 healthy_3 healthy TGTGCCGTGGACACCATCGACAGAGGCTCAACCCTGGGGCGGCTCTACTTT CAVDTIDRGSTLGRLYF TRAV39*01 TRAJ18*01 94.0 2546.0 CAVDTIDRGSTLGRLYF_ 5 3925 M1 FLU 0.55 1250 M1 94 3831 11 InfluenzaA M1 GILGFVFTL effector T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*02:01 B2M MHCI -10769 chip0423_97397 11.46 8.04 Chip2 healthy_3 healthy _ 6746 4720 GAD65-114-122 GAD65 0.67 63 GAD65-114-122 104 4616 10 HomoSapiens GAD65 VMNILLQYV effector memory T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*02:01 B2M MHCI -10770 chip0423_302102 -1.88 9.55 Chip2 healthy_3 healthy TGTGCTCTGAGGCGCGGCCTGCTGTCCGCTGGGGGGCCTTGCAGTTT CALRRGLct?VRWGALQF TRAV9-2*01 TRAJ24*01 49.0 2189.0 CALRRGLct?VRWGALQF_ 1 5715 ROTA-VP2-1 ROTA 0.75 17 NEG 74 5641 3 RotavirusA VP2 SLISGMWLL Naive T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*02:01 B2M MHCI -10771 chip0423_161433 16.31 10.86 Chip2 healthy_3 healthy _ 6746 3662 M1 FLU 0.44 1250 M1 93 3569 12 InfluenzaA M1 GILGFVFTL effector T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*02:01 B2M MHCI -10772 chip0423_95446 10.63 11.18 Chip2 healthy_3 healthy TGTGCCAGCAGCGGACCCCACGCTAACTATGGCTACACCTTC CASSGPHANYGYTF TRBV9*01 TRBJ1-2*01 10.0 413.0 _CASSGPHANYGYTF 1 4878 NP44-52 FLU 0.86 474 NP44-52 83 4795 9 InfluenzaA NP CTELKLSDY effector memory T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*01:01 B2M MHCI -10773 chip0423_855671 6.09 12.85 Chip2 healthy_3 healthy TGTGCTCTGAGTGAAGGGAACACCGACAAGCTCATCTTT CALSEGNTDKLIF TRAV19*01 TRAJ34*01 33.0 2039.0 CALSEGNTDKLIF_ 1 4564 NP44-52 FLU 0.95 474 NP44-52 87 4477 7 InfluenzaA NP CTELKLSDY transitional T cells between effector and memory populations PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*01:01 B2M MHCI -10774 chip0423_717780 14.21 13.26 Chip2 T1D_4 T1D TGTGCTGTCAATTCAGGAAACACACCTCTTGTCTTT CAVNSGNTPLVF TRAV1-2*01 TRAJ29*01 19.0 1816.0 CAVNSGNTPLVF_ 2 2492 EBNA3A-158-166 EBV 0.64 444 NEG 102 2390 12 EBV EBNA3A QAKWRLQTL effector T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-B*08:01 B2M MHCI -10775 chip0423_391143 7.22 14.17 Chip2 healthy_3 healthy TGTGCTCTGAGTTCTTATTCTGGGGGTTACCAGAAAGTTACCTTC CALSSYSGGYQKVTF TRAV19*01 TRAJ13*01 50.0 1967.0 CALSSYSGGYQKVTF_ 4 4471 NP44-52 FLU 0.68 474 NP44-52 99 4372 7 InfluenzaA NP CTELKLSDY transitional T cells between effector and memory populations PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*01:01 B2M MHCI -10776 chip0423_493381 -3.61 8.98 Chip2 healthy_3 healthy _ 6746 6629 ADH-79-88 ADH 0.86 15 NEG 87 6542 2 HomoSapiens ADH RQFGPDWIVA Naive T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*02:01 B2M MHCI -10777 chip0423_219408 10.52 6.73 Chip2 T1D_4 T1D _ 6746 6009 EBNA3A-158-166 EBV 0.95 444 EBNA3A-158-166 90 5919 10 EBV EBNA3A QAKWRLQTL effector memory T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-B*08:01 B2M MHCI -10778 chip0423_423877 10.97 10.34 Chip2 healthy_4 healthy _ 6746 3853 BZLF1-190-197 EBV 0.57 2156 NEG 87 3766 9 EBV BZLF1 RAKFKQLL effector memory T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-B*08:01 B2M MHCI -10779 chip0423_769997 -2.12 11.49 Chip2 T1D_4 T1D TGTGCAACTTCTATATCCAACTTTGGAAATGAGAAATTAACCTTT CATSISNFGNEKLTF TRAV12-3*01 TRAJ48*01 1.0 23.0 CATSISNFGNEKLTF_ 1 4331 PGT-178 PGT 0.71 1480 NEG 76 4255 3 HomoSapiens PGT LLAGIGTVPI Naive T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*02:01 B2M MHCI -10780 chip0423_340592 -0.79 9.25 Chip2 healthy_4 healthy TGTGCCTCCTCGGGGGGGGGGCCCTACGAGCAGTACTTC CASSGGGPYEQYF TRBV6-1*01 TRBJ2-7*01 7.0 382.0 _CASSGGGPYEQYF 1 5928 ZNT8-293-300 ZNT8 0.57 17 NEG 98 5830 3 HomoSapiens ZNT8 LAVDGVLSV Naive T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*02:01 B2M MHCI -10781 chip0423_273912 11.65 13.7 Chip2 T1D_5 T1D _ 6746 1897 BZLF1-190-197 EBV 0.57 2156 NEG 108 1789 11 EBV BZLF1 RAKFKQLL effector T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-B*08:01 B2M MHCI -10782 chip0423_537361 11.02 12.14 Chip2 T1D_5 T1D _ 6746 3024 BZLF1-190-197 EBV 0.62 2156 NEG 78 2946 9 EBV BZLF1 RAKFKQLL effector memory T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-B*08:01 B2M MHCI -10783 chip0423_125649 -0.08 8.67 Chip2 T1D_5 T1D TGTGCCAGCAGGGCGGCGGGATGGTTCTTC CASRAAGWFF TRBV6-2*01,TRBV6-3*01 TRBJ2-1*01 6.0 1101.0 _CASRAAGWFF 1 8095 G6PC2-NLI-8 IGRP 0.85 32 G6PC2-NLI-8 79 8016 4 HomoSapiens G6PC2 NLIFKWIL Naive T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-B*08:01 B2M MHCI -10784 chip0423_64277 10.59 13.81 Chip2 healthy_3 healthy TGTGCCCCGGCCGGGCGGGCCCAGTGGCTCTAGGTTGACCTTT CAPAGRA??cSGSRLTF TRAV17*01 TRAJ10*01 12.0 513.0 TGTGCCTGCGGTTTGCGGCTTCTACCCCCACCATGGGCAGTTCTTC CACGLRLct??acPHHGQFF TRBV27*01 TRBJ2-1*01 2.0 7.0 CAPAGRA??cSGSRLTF_CACGLRLct??acPHHGQFF 1 1953 M1 FLU 0.47 1250 M1 85 1868 11 InfluenzaA M1 GILGFVFTL effector T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*02:01 B2M MHCI -10785 chip0423_669100 11.17 7.64 Chip2 healthy_3 healthy TTTGCTCCGGTTGGCGGCTGGCGGACCTTGCAGTTT FAPVGGWRTLQF TRAV17*01 TRAJ24*01 9.0 811.0 TGCAGTGCTAGTGCCTCCCAATGGACAGAAGAGACCCAGTACTTC CSASASQWTEETQYF TRBV20-1*01 TRBJ2-5*01 5.0 205.0 FAPVGGWRTLQF_CSASASQWTEETQYF 1 4342 GAD65-114-122 GAD65 1.0 63 NEG 93 4249 10 HomoSapiens GAD65 VMNILLQYV effector memory T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*02:01 B2M MHCI -10786 chip0423_452647 5.25 9.68 Chip2 T1D_4 T1D _ 6746 4979 EBV-LMP2A EBV 1.0 700 NEG 81 4898 6 EBV LMP2A CLGGLLTMV central memory T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*02:01 B2M MHCI -10787 chip0423_135777 6.95 11.09 Chip2 healthy_3 healthy TGTGCTCGTAGCGGTTCTGGTTCTGCCCGGCCACTGACCTTT CARSGSGSARPLTF TRAV36/DV7*01 TRAJ22*01 4.0 287.0 TGTGCCAGTATCGGAAAGACCACTAGCACAGATACGCAGTATTTT CASIGKTTSTDTQYF TRBV19*01 TRBJ2-3*01 17.0 544.0 CARSGSGSARPLTF_CASIGKTTSTDTQYF 2 7391 NP44-52 FLU 0.72 474 NP44-52 82 7309 7 InfluenzaA NP CTELKLSDY transitional T cells between effector and memory populations PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*01:01 B2M MHCI -10788 chip0423_316138 12.25 12.76 Chip2 T1D_5 T1D TGTTCTCTATACCCCGGTTTTGGAGCATGCCAAGGAACTCTCATCTCT CSLYPGFGACQGTLIS TRAV16*01 TRAJ42*01 2.0 75.0 TGTGCCAGCAGCCATACCCAAGATATCCCCAACTATGGCTACACCTTC CASSHTQDIPNYGYTF TRBV12-3*01,TRBV12-4*01 TRBJ1-2*01 41.0 1664.0 CSLYPGFGACQGTLIS_CASSHTQDIPNYGYTF 1 2796 BZLF1-190-197 EBV 0.78 2156 NEG 90 2706 11 EBV BZLF1 RAKFKQLL effector T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-B*08:01 B2M MHCI -10789 chip0423_471404 10.99 9.61 Chip2 T1D_5 T1D TGTGCCAGCAGCTTATTGGGGGGGAATAATTCACCCCTCCACTTT CASSLLGGNNSPLHF TRBV7-9*01 TRBJ1-6*01 29.0 1138.0 _CASSLLGGNNSPLHF 1 4154 BZLF1-190-197 EBV 0.44 2156 NEG 77 4077 9 EBV BZLF1 RAKFKQLL effector memory T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-B*08:01 B2M MHCI -10790 chip0423_452649 12.71 8.54 Chip2 healthy_4 healthy _ 6746 2445 EBNA3A-193-201 EBV 1.0 1022 NEG 89 2356 10 EBV EBNA3A FLRGRAYGL effector memory T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-B*08:01 B2M MHCI -10791 chip0423_452138 11.48 8.32 Chip2 healthy_4 healthy _ 6746 4015 BZLF1-190-197 EBV 0.62 2156 NEG 91 3924 10 EBV BZLF1 RAKFKQLL effector memory T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-B*08:01 B2M MHCI -10792 chip0423_415869 10.14 10.33 Chip2 healthy_4 healthy TGTGCCCGCCGTTACACGTCGCCGGTCCTGAATGGCTTTTCTTT CARRYTSc?cGPEWLFF TRBV6-2*01,TRBV6-3*01 TRBJ1-1*01 8.0 246.0 _CARRYTSc?cGPEWLFF 1 3560 BZLF1-190-197 EBV 0.67 2156 NEG 104 3456 9 EBV BZLF1 RAKFKQLL effector memory T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-B*08:01 B2M MHCI -10793 chip0423_877971 -2.21 9.49 Chip2 healthy_3 healthy _ 6746 7280 IAPP-5-13 IAPP 0.8 30 IAPP-5-13 85 7195 3 HomoSapiens IAPP KLQVFLIVL Naive T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*02:01 B2M MHCI -10794 chip0423_513071 10.57 10.18 Chip2 healthy_4 healthy _ 6746 2869 BZLF1-190-197 EBV 0.81 2156 NEG 80 2789 9 EBV BZLF1 RAKFKQLL effector memory T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-B*08:01 B2M MHCI -10795 chip0423_666392 11.75 7.97 Chip2 T1D_4 T1D _ 6746 5229 EBV-LMP1-1 EBV 0.57 237 NEG 94 5135 10 EBV LMP1 YLLEMLWRL effector memory T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*02:01 B2M MHCI -10796 chip0423_493026 11.09 12.05 Chip2 healthy_3 healthy TGTGCCCGCAGCCCCGCTCGCCCGGGGAAAGGGCTACACCTTC CARSPAR??cRGKGYTF TRBV7-8*01 TRBJ1-2*01 8.0 107.0 _CARSPAR??cRGKGYTF 1 2686 EBV-BRLF1 EBV 0.88 1264 EBV-BRLF1 80 2606 9 EBV BRLF1 YVLDHLIVV effector memory T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*02:01 B2M MHCI -10797 chip0423_374179 15.84 11.6 Chip2 healthy_3 healthy _ 6746 2550 GAD65-114-122 GAD65 0.5 63 NEG 77 2473 12 HomoSapiens GAD65 VMNILLQYV effector T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*02:01 B2M MHCI -10798 chip0423_316408 9.88 9.8 Chip2 healthy_4 healthy TGCAGTGCTAGAGATGAGACAGGGAATGGCTACACCTTC CSARDETGNGYTF TRBV20-1*01 TRBJ1-2*01 15.0 409.0 _CSARDETGNGYTF 6 2972 EBV-BLMF1 EBV 0.75 2531 NEG 101 2871 9 EBV BLMF1 GLCTLVAML effector memory T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*02:01 B2M MHCI -10799 chip0423_834451 -2.85 14.93 Chip2 T1D_6 T1D TGTGCCAGCAGCTTGGAGGCCTTTGGCCCTTCACCCCTCCACTTT CASSLEAFGPSPLHF TRBV5-4*01 TRBJ1-6*01 27.0 847.0 _CASSLEAFGPSPLHF 1 2524 ZNT8-PTE-9 ZNT8 0.8 18 NEG 83 2441 1 HomoSapiens ZNT8 PTEKGANEY Naive T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*01:01 B2M MHCI -10800 chip0423_541093 -2.16 10.55 Chip2 T1D_6 T1D TGTGCTACGGTCATGCCAACTGACAGCTGGGGGAAATTGCAGTTT CATVMPTDSWGKLQF TRAV17*01 TRAJ24*01 15.0 908.0 TGTGCCTGGAGTGTCGGCACCGGGGAGCTGTTTTTT CAWSVGTGELFF TRBV30*01 TRBJ2-2*01 2.0 57.0 CATVMPTDSWGKLQF_CAWSVGTGELFF 1 5256 PGT-178 PGT 0.7 1480 NEG 92 5164 3 HomoSapiens PGT LLAGIGTVPI Naive T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*02:01 B2M MHCI -10801 chip0423_500704 -4.07 8.29 Chip2 T1D_6 T1D _ 6746 8292 GAD2-MMI-8 GAD65 0.67 40 GAD2-MMI-8 81 8211 2 HomoSapiens GAD2 MMIARFKM Naive T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-B*08:01 B2M MHCI -10802 chip0423_51449 5.85 12.16 Chip2 healthy_3 healthy TGTGCTTTCATGAAGCTTACCTACAATAACAATGACATGCGCTTT CAFMKLTYNNNDMRF TRAV38-1*01 TRAJ43*01 36.0 1917.0 TGCAGTGCTGACGGCTACAGGGGGCCATATGGCTACACCTTC CSADGYRGPYGYTF TRBV20-1*01 TRBJ1-2*01 15.0 1031.0 CAFMKLTYNNNDMRF_CSADGYRGPYGYTF 2 7088 NP44-52 FLU 0.56 474 NEG 70 7018 7 InfluenzaA NP CTELKLSDY transitional T cells between effector and memory populations PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*01:01 B2M MHCI -10803 chip0423_24791 -3.66 12.85 Chip2 T1D_6 T1D TGTGCCAGCAGACCTGACTGGGACAGTTCGAACACCGGGGAGCTGTTTTTT CASRPDWDSSNTGELFF TRBV11-2*01 TRBJ2-2*01 35.0 1177.0 _CASRPDWDSSNTGELFF 1 4017 PGT-178 PGT 0.72 1480 NEG 86 3931 1 HomoSapiens PGT LLAGIGTVPI Naive T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*02:01 B2M MHCI -10804 chip0423_851136 10.73 12.43 Chip2 healthy_3 healthy _ 6746 3386 NP44-52 FLU 0.65 474 NP44-52 80 3306 11 InfluenzaA NP CTELKLSDY effector T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*01:01 B2M MHCI -10805 chip0423_5589 15.94 10.83 Chip2 healthy_4 healthy TGTGCCAGCAGCCAGACATTTCCGAACACCGGGGAGCTGTTTTTT CASSQTFPNTGELFF TRBV3-1*01 TRBJ2-2*01 63.0 3002.0 _CASSQTFPNTGELFF 12 1979 BZLF1-190-197 EBV 0.62 2156 NEG 86 1893 12 EBV BZLF1 RAKFKQLL effector T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-B*08:01 B2M MHCI -10806 chip0423_614113 5.62 13.25 Chip2 healthy_5 healthy TGCAGTGCCCAAAGCCGTTCGACAGGGAGGAACACCGGGGAGCTGTTTTTT CSAQSRSTGRNTGELFF TRBV20-1*01 TRBJ2-2*01 40.0 1362.0 _CSAQSRSTGRNTGELFF 1 4811 NP380-388 FLU 0.46 60 NEG 76 4735 7 InfluenzaA NP ELRSRYWAI transitional T cells between effector and memory populations PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-B*08:01 B2M MHCI -10807 chip0423_476435 7.77 7.91 Chip2 T1D_4 T1D TGCAGCGCCACCCGGCCGGGAAACATTCAGTACTTC CSATRPGNIQYF TRBV29-1*01 TRBJ2-4*01 123.0 10918.0 _CSATRPGNIQYF 2 5769 BZLF1-190-197 EBV 0.5 2156 NEG 97 5672 8 EBV BZLF1 RAKFKQLL effector memory T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-B*08:01 B2M MHCI -10808 chip0423_449242 7.5 12.42 Chip2 healthy_3 healthy TGTGCCAGCTGCCGGGGCGGGACCTACGAGCAGTACTTC CASCRGGTYEQYF TRBV10-3*01 TRBJ2-7*01 24.0 1259.0 _CASCRGGTYEQYF 1 4546 NP44-52 FLU 0.64 474 NP44-52 84 4462 7 InfluenzaA NP CTELKLSDY transitional T cells between effector and memory populations PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*01:01 B2M MHCI -10809 chip0423_368981 9.32 13.87 Chip2 healthy_3 healthy TGCGCTGATTACAGCAGTGCTTCCAAGATAATCTTT CADYSSASKIIF TRAV1-1*01 TRAJ3*01 3.0 104.0 CADYSSASKIIF_ 2 2636 NP44-52 FLU 1.0 474 NEG 73 2563 11 InfluenzaA NP CTELKLSDY effector T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*01:01 B2M MHCI -10810 chip0423_134285 11.27 7.56 Chip2 T1D_5 T1D TGTGCCAGCAGCTTACTGGGGGTGGCCTCCTACGAGCAGTACTTC CASSLLGVASYEQYF TRBV7-9*01 TRBJ2-7*01 17.0 783.0 _CASSLLGVASYEQYF 1 3647 BZLF1-190-197 EBV 0.75 2156 NEG 100 3547 10 EBV BZLF1 RAKFKQLL effector memory T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-B*08:01 B2M MHCI -10811 chip0423_492400 8.09 13.9 Chip2 healthy_3 healthy _ 6746 2734 NP44-52 FLU 0.74 474 NP44-52 84 2650 7 InfluenzaA NP CTELKLSDY transitional T cells between effector and memory populations PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*01:01 B2M MHCI -10812 chip0423_49369 9.81 7.04 Chip2 T1D_5 T1D TGTGCACCTCCCACAGAACCTTTCTGGGGCTGGGCGTTACCACCTCACCTTC CAPPTEPFtg??ggAGRYHLTF TRAV14/DV4*01 TRAJ28*01 6.0 301.0 TGTGCCAGCAGCCCTCTTGGGAGCAATGAAAAACTGTTTTTT CASSPLGSNEKLFF TRBV7-9*01 TRBJ1-4*01 33.0 1168.0 CAPPTEPFtg??ggAGRYHLTF_CASSPLGSNEKLFF 1 6504 BZLF1-190-197 EBV 0.52 2156 NEG 102 6402 10 EBV BZLF1 RAKFKQLL effector memory T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-B*08:01 B2M MHCI -10813 chip0423_795787 -2.82 8.7 Chip2 healthy_5 healthy CGTGCCAGCCGCCCCGGGGCCGCCTATGGCTACACCTTC RASRPGAAYGYTF TRBV14*01 TRBJ1-2*01 2.0 149.0 _RASRPGAAYGYTF 1 4624 gp160-586-593 HIV 0.5 30 NEG 81 4543 2 HIV-1 gp160 YLKDQQLL Naive T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-B*08:01 B2M MHCI -10814 chip0423_504078 10.94 7.32 Chip2 T1D_4 T1D _ 6746 4970 BZLF1-190-197 EBV 0.82 2156 BZLF1-190-197 96 4874 10 EBV BZLF1 RAKFKQLL effector memory T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-B*08:01 B2M MHCI -10815 chip0423_557488 -2.34 8.7 Chip2 healthy_5 healthy TGTGCCAGCAGCTCGGAGGTGGGGGTCTCCTACGAGCAGTACTTC CASSSEVGVSYEQYF TRBV7-6*01 TRBJ2-7*01 7.0 271.0 _CASSSEVGVSYEQYF 1 4765 BZLF1-190-197 EBV 0.78 2156 NEG 86 4679 2 EBV BZLF1 RAKFKQLL Naive T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-B*08:01 B2M MHCI -10816 chip0423_450420 10.88 12.27 Chip2 healthy_4 healthy TGTGCAATGGCGAATAGTGGAGGTAGCAACTATAAACTGACATTT CAMANSGGSNYKLTF TRAV12-3*01 TRAJ53*01 72.0 3102.0 TGCAGCGTTGGTTCAGGGGACTACGAGCAGTACTTC CSVGSGDYEQYF TRBV29-1*01 TRBJ2-7*01 36.0 2775.0 CAMANSGGSNYKLTF_CSVGSGDYEQYF 2 2637 BZLF1-190-197 EBV 0.73 2156 NEG 90 2547 11 EBV BZLF1 RAKFKQLL effector T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-B*08:01 B2M MHCI -10817 chip0423_445680 11.1 10.64 Chip2 healthy_4 healthy TGTGCAGCAAGCAGGGTTCTAGCAACACAGGCAAACTAATCTTT CAASRVLg?cNTGKLIF TRAV23/DV6*01 TRAJ37*01 5.0 132.0 TGTGCCAGCAGCACGACCCGCGCAGGGACTTGGCCCCTCCACTTT CASSTTRAGTWPLHF TRBV7-9*01 TRBJ1-6*01 45.0 1616.0 CAASRVLg?cNTGKLIF_CASSTTRAGTWPLHF 1 4279 BZLF1-190-197 EBV 0.67 2156 NEG 96 4183 9 EBV BZLF1 RAKFKQLL effector memory T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-B*08:01 B2M MHCI -10818 chip0423_248224 6.89 12.88 Chip2 T1D_5 T1D TGCAGTGCCAGGCGTCGTTGGGAGAGCACAGATACGCAGTATTTT CSARRRWESTDTQYF TRBV20-1*01 TRBJ2-3*01 6.0 134.0 _CSARRRWESTDTQYF 1 3551 NP140-148 FLU 0.92 102 NP140-148 83 3468 7 InfluenzaA NP HSNLNDATY transitional T cells between effector and memory populations PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*01:01 B2M MHCI -10819 chip0423_628779 8.09 11.49 Chip2 healthy_3 healthy TGTGCTCGTCGCGGTTCTGGTTCTGCCCGGCCCCTGACCTTT CARRGSGSARPLTF TRAV36/DV7*01 TRAJ22*01 32.0 2015.0 TGTGCTGTTCTCCCCTCTAACGACTACAAGCTCAGCTTT CAVLPSNDYKLSF TRAV21*01 TRAJ20*01 29.0 1995.0 0.4 TGTGCCAGTATCGGAAAGACCACTAGCACAGATACGCAGTATTTT CASIGKTTSTDTQYF TRBV19*01 TRBJ2-3*01 25.0 1069.0 CARRGSGSARPLTF_CASIGKTTSTDTQYF 2 3774 NP44-52 FLU 0.76 474 NP44-52 89 3685 7 InfluenzaA NP CTELKLSDY transitional T cells between effector and memory populations PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*01:01 B2M MHCI -10820 chip0423_584435 14.33 9.92 Chip2 healthy_5 healthy TGTGCCAGCAGCCAAGATCTAAGGGGCGAGCAGTACTTC CASSQDLRGEQYF TRBV4-2*01 TRBJ2-7*01 21.0 768.0 _CASSQDLRGEQYF 3 3704 LMP2A-CPL EBV 1.0 44 NEG 92 3612 12 EBV LMP2A CPLSKILL effector T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-B*08:01 B2M MHCI -10821 chip0423_26596 -1.78 9.01 Chip2 healthy_4 healthy _ 6746 5612 GAD65-114-122 GAD65 0.75 63 GAD65-114-122 82 5530 3 HomoSapiens GAD65 VMNILLQYV Naive T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*02:01 B2M MHCI -10822 chip0423_281745 11.57 12.89 Chip2 healthy_4 healthy _ 6746 2112 EBNA3A-193-201 EBV 0.8 1022 NEG 74 2038 11 EBV EBNA3A FLRGRAYGL effector T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-B*08:01 B2M MHCI -10823 chip0423_465467 13.37 8.22 Chip2 T1D_5 T1D _ 6746 2257 BZLF1-190-197 EBV 0.59 2156 BZLF1-190-197 85 2172 10 EBV BZLF1 RAKFKQLL effector memory T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-B*08:01 B2M MHCI -10824 chip0423_473397 7.35 11.66 Chip2 T1D_4 T1D TGTGCCGTGAACGGTTTTTCTGGTGGCTACAATAAGCTGATTTTT CAVNGFSGGYNKLIF TRAV8-1*01 TRAJ4*01 41.0 2040.0 TGTGCCAGCAGCCCCGGGGAGACGCGCGGCGAGCAGTACTTC CASSPGETRGEQYF TRBV5-6*01 TRBJ2-7*01 27.0 1624.0 CAVNGFSGGYNKLIF_CASSPGETRGEQYF 1 6037 EBV-LMP1-1 EBV 1.0 237 NEG 82 5955 7 EBV LMP1 YLLEMLWRL transitional T cells between effector and memory populations PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*02:01 B2M MHCI -10825 chip0423_470173 5.43 10.11 Chip2 T1D_4 T1D _ 6746 7061 EBV-LMP1-1 EBV 0.56 237 NEG 75 6986 6 EBV LMP1 YLLEMLWRL central memory T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*02:01 B2M MHCI -10826 chip0423_518915 -3.45 12.66 Chip2 healthy_3 healthy TGTGCCAGCAGTTTACTAGCGGGACCCTACGAGCAGTACTTC CASSLLAGPYEQYF TRBV27*01 TRBJ2-7*01 22.0 1460.0 _CASSLLAGPYEQYF 1 4510 PGT-178 PGT 0.46 1480 NEG 79 4431 1 HomoSapiens PGT LLAGIGTVPI Naive T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*02:01 B2M MHCI -10827 chip0423_709097 7.2 13.39 Chip2 healthy_3 healthy _ 6746 3803 NP44-52 FLU 0.7 474 NP44-52 79 3724 7 InfluenzaA NP CTELKLSDY transitional T cells between effector and memory populations PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*01:01 B2M MHCI -10828 chip0423_349695 11.6 7.57 Chip2 T1D_5 T1D TGTGCCAGCAGCTCCCTCGGACAGAAGAACACTGAAGCCTCCTTT CASSSLGQKNTEASF TRBV7-9*01 TRBJ1-1*01 16.0 482.0 _CASSSLGQKNTEASF 1 3522 BZLF1-190-197 EBV 0.63 2156 NEG 87 3435 10 EBV BZLF1 RAKFKQLL effector memory T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-B*08:01 B2M MHCI -10829 chip0423_108240 12.86 13.67 Chip2 T1D_4 T1D TGCGCCAGCCTACCCACTCCACATTCGGACTCGGGCAATTCGAACACTGAAGCTTTCTTT CASLPTPHSDSGNSNTEAFF TRBV5-1*01 TRBJ1-1*01 2.0 15.0 _CASLPTPHSDSGNSNTEAFF 2 2625 BZLF1-190-197 EBV 0.44 2156 NEG 82 2543 11 EBV BZLF1 RAKFKQLL effector T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-B*08:01 B2M MHCI -10830 chip0423_849780 11.74 12.43 Chip2 healthy_4 healthy TGTGCCAGCAGGGTAGGCCGAGAACCCACCGGGGAGCTGTTTTTT CASRVGREPTGELFF TRBV3-1*01 TRBJ2-2*01 8.0 440.0 _CASRVGREPTGELFF 13 2216 BZLF1-190-197 EBV 0.56 2156 NEG 79 2137 11 EBV BZLF1 RAKFKQLL effector T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-B*08:01 B2M MHCI -10831 chip0423_713234 5.0 9.81 Chip2 T1D_4 T1D _ 6746 3279 EBV-LMP1-1 EBV 0.91 237 NEG 83 3196 6 EBV LMP1 YLLEMLWRL central memory T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*02:01 B2M MHCI -10832 chip0423_88632 7.58 12.6 Chip2 healthy_3 healthy TGTGCTGTGGGTTCTCCTAATTATGGAGGAAGCCAAGGAAATCTCATCTTT CAVGSPNYGGSQGNLIF TRAV21*01 TRAJ42*01 1.0 44.0 CAVGSPNYGGSQGNLIF_ 2 4350 NP44-52 FLU 0.62 474 NP44-52 75 4275 7 InfluenzaA NP CTELKLSDY transitional T cells between effector and memory populations PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*01:01 B2M MHCI -10833 chip0423_811171 15.08 12.94 Chip2 T1D_5 T1D TGTGCAGCAAGCAACAACTTTGGAAATGAGAAATTAACCTTT CAASNNFGNEKLTF TRAV23/DV6*01 TRAJ48*01 75.0 3917.0 TATGCCAGCCAACTAGCGGGAGGCACCGGGGAGCTGTTCTTT YASQLAGGTGELFF TRBV24-1*01 TRBJ2-2*01 14.0 881.0 CAASNNFGNEKLTF_YASQLAGGTGELFF 1 1654 BZLF1-190-197 EBV 0.8 2156 NEG 93 1561 12 EBV BZLF1 RAKFKQLL effector T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-B*08:01 B2M MHCI -10834 chip0423_417253 -4.51 10.45 Chip2 healthy_3 healthy TGTGCTGTGCCCGGAGCCAATAGTAAGCTGACATTT CAVPGANSKLTF TRAV21*01 TRAJ56*01 16.0 1437.0 CAVPGANSKLTF_ 1 3207 GFAP-ALD-9 GFAP 0.67 11 GFAP-ALD-9 85 3122 2 HomoSapiens GFAP ALDIEIATY Naive T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*01:01 B2M MHCI -10835 chip0423_289975 -3.72 13.93 Chip2 tet_neg _ 6746 2977 NP140-148 FLU 0.8 102 NEG 82 2895 1 InfluenzaA NP HSNLNDATY Naive T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*01:01 B2M MHCI -10836 chip0423_289239 -2.58 13.88 Chip2 healthy_3 healthy TGTGCTTATTTTTTAGGAGATGACAAGATCATCTTT CAYFLGDDKIIF TRAV38-1*01 TRAJ30*01 12.0 447.0 CAYFLGDDKIIF_ 1 3442 MART1-A28L MART1 0.57 84 NEG 72 3370 1 HomoSapiens MART1 ALGIGILTV Naive T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*02:01 B2M MHCI -10837 chip0423_625705 6.24 14.26 Chip2 healthy_3 healthy TGTGCATCGAGGGGAGGTAGCAACTATAAACTGACATTC CASRGGSNYKLTF TRAV16*01,TRAV14/DV4*01 TRAJ53*01 2.0 21.0 CASRGGSNYKLTF_ 1 5187 NP44-52 FLU 0.69 474 NP44-52 69 5118 7 InfluenzaA NP CTELKLSDY transitional T cells between effector and memory populations PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*01:01 B2M MHCI -10838 chip0423_20064 14.85 12.31 Chip2 T1D_4 T1D TGTGCCAGCAGCTTAGCGGTCGGAGAAGGGCCCCAGCATTTT CASSLAVGEGPQHF TRBV7-9*01 TRBJ1-5*01 17.0 802.0 _CASSLAVGEGPQHF 113 2436 BZLF1-190-197 EBV 0.75 2156 BZLF1-190-197 77 2359 12 EBV BZLF1 RAKFKQLL effector T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-B*08:01 B2M MHCI -10839 chip0423_15624 6.46 11.95 Chip2 healthy_3 healthy _ 6746 7114 NP44-52 FLU 0.95 474 NP44-52 91 7023 7 InfluenzaA NP CTELKLSDY transitional T cells between effector and memory populations PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*01:01 B2M MHCI -10840 chip0423_100 -2.35 10.23 Chip2 healthy_4 healthy _ 6746 5381 MART1-ALA MART1 0.67 269 NEG 77 5304 3 HomoSapiens MART1 ALAGIGILTV Naive T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*02:01 B2M MHCI -10841 chip0423_770990 5.2 9.67 Chip2 healthy_3 healthy TGCGCCAGCAGTGATGACGGCATGAACACTGAAGCTTTCTTT CASSDDGMNTEAFF TRBV10-2*01 TRBJ1-1*01 23.0 855.0 _CASSDDGMNTEAFF 8 4567 EBV-LMP2A EBV 0.57 700 NEG 82 4485 6 EBV LMP2A CLGGLLTMV central memory T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*02:01 B2M MHCI -10842 chip0423_698340 12.57 10.32 Chip2 T1D_4 T1D TGCATCGTCAGAGAGGGAGGAGGTGCTGACGGACTCACCTTT CIVREGGGADGLTF TRAV26-1*01 TRAJ45*01 44.0 2678.0 TGTGCCAGCAGCTTAGCGGTCGGAGAAGGGCCCCAGCATTTT CASSLAVGEGPQHF TRBV7-9*01 TRBJ1-5*01 16.0 774.0 CIVREGGGADGLTF_CASSLAVGEGPQHF 68 4493 BZLF1-190-197 EBV 0.78 2156 BZLF1-190-197 84 4409 9 EBV BZLF1 RAKFKQLL effector memory T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-B*08:01 B2M MHCI -10843 chip0423_628395 11.54 10.22 Chip2 T1D_5 T1D TGTGCAGCAATGGAAACCTCCTACGACAAGGTGATATTT CAAMETSYDKVIF TRAV13-1*01 TRAJ50*01 40.0 2751.0 CAAMETSYDKVIF_ 7 3274 BZLF1-190-197 EBV 0.76 2156 NEG 88 3186 9 EBV BZLF1 RAKFKQLL effector memory T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-B*08:01 B2M MHCI -10844 chip0423_593494 12.64 8.03 Chip2 healthy_4 healthy TGTGCCAGCACACTACAGGGCAAAGAGACCCAGTACTTC CASTLQGKETQYF TRBV6-2*01,TRBV6-3*01 TRBJ2-5*01 14.0 762.0 _CASTLQGKETQYF 1 3592 EBV-BRLF1 EBV 0.87 1264 NEG 78 3514 10 EBV BRLF1 YVLDHLIVV effector memory T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*02:01 B2M MHCI -10845 chip0423_860751 -4.66 9.87 Chip2 healthy_3 healthy TGTGCCCTTAACCAGGGAGGAAAGCTTATCTTC CALNQGGKLIF TRAV12-1*01 TRAJ23*01 3.0 244.0 TGTGCCAGTACAGGCTTCGGCACCGGGGAGCTGTTTTTT CASTGFGTGELFF TRBV28*01 TRBJ2-2*01 7.0 299.0 CALNQGGKLIF_CASTGFGTGELFF 1 4902 PGT-178 PGT 0.7 1480 PGT-178 70 4832 2 HomoSapiens PGT LLAGIGTVPI Naive T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*02:01 B2M MHCI -10846 chip0423_515063 -3.3 13.45 Chip2 T1D_6 T1D TGTGCTCTGAGCCACCGAGGAGCTGCAGGCCACCCGCTAACTTTT CALSHRGAAGHPLTF TRAV9-2*01 TRAJ17*01 32.0 1999.0 CALSHRGAAGHPLTF_ 1 4220 PA-46-54 FLU 0.55 18 NEG 76 4144 1 InfluenzaA PA FMYSDFHFI Naive T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*02:01 B2M MHCI -10847 chip0423_873665 11.34 10.81 Chip2 healthy_4 healthy _ 6746 3121 EBV-BLMF1 EBV 0.91 2531 NEG 71 3050 9 EBV BLMF1 GLCTLVAML effector memory T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*02:01 B2M MHCI -10848 chip0423_794156 -0.55 7.33 Chip2 healthy_5 healthy TGTGCTCTCGATCAAACTGGGGCAAACAACCTCTTCTTT CALDQTGANNLFF TRAV16*01 TRAJ36*01 34.0 2096.0 TGTGCCAGCAGCTTGAGTACAGGTGGGCTACGCGAGCAGTACTTC CASSLSTGGLREQYF TRBV5-4*01 TRBJ2-7*01 34.0 1713.0 CALDQTGANNLFF_CASSLSTGGLREQYF 1 8434 NP140-148 FLU 0.6 102 NP140-148 79 8355 3 InfluenzaA NP HSNLNDATY Naive T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*01:01 B2M MHCI -10849 chip0423_275340 -2.74 9.03 Chip2 T1D_6 T1D TGTGCAATGAGCGGCGACTACAAGCTCAGCTTT CAMSGDYKLSF TRAV12-3*01 TRAJ20*01 27.0 3365.0 TGTGCAATGAGCTTATCTAACTTTGGAAATGAGAAATTAACCTTT CAMSLSNFGNEKLTF TRAV12-3*01 TRAJ48*01 23.0 711.0 0.39 CAMSGDYKLSF_ 1 6697 PGT-178 PGT 0.88 1480 NEG 94 6603 2 HomoSapiens PGT LLAGIGTVPI Naive T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*02:01 B2M MHCI -10850 chip0423_159606 7.23 11.82 Chip2 healthy_3 healthy _ 6746 5840 M1 FLU 0.58 1250 M1 75 5765 7 InfluenzaA M1 GILGFVFTL transitional T cells between effector and memory populations PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*02:01 B2M MHCI -10851 chip0423_637444 6.2 14.15 Chip2 healthy_3 healthy TGTGCCGCGGGTGGGGATGGAGGGAGCCAAGGAAATCTCATCTTT CAAGGDGGSQGNLIF TRAV12-2*01 TRAJ42*01 9.0 242.0 TGTGCCAGCACCTTATTCGCCCGACAAGAGACCCAGTACTTC CASTLFARQETQYF TRBV6-9*01 TRBJ2-5*01 32.0 901.0 CAAGGDGGSQGNLIF_CASTLFARQETQYF 1 5039 M1 FLU 0.4 1250 NEG 78 4961 7 InfluenzaA M1 GILGFVFTL transitional T cells between effector and memory populations PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*02:01 B2M MHCI -10852 chip0423_605253 -4.37 10.94 Chip2 healthy_3 healthy TGTGCCAGTAGTCCTTTAGCCAACTACCAGGAGCCGCTCTTC CASSPLANYQEPLF TRBV19*01 TRBJ2-1*01 2.0 160.0 _CASSPLANYQEPLF 1 4260 IAPP-5-13 IAPP 0.42 30 NEG 75 4185 1 HomoSapiens IAPP KLQVFLIVL Naive T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*02:01 B2M MHCI -10853 chip0423_432769 -4.19 11.29 Chip2 T1D_6 T1D TGTGCCGTGGAGAAAGCGTGGGATGACAAGATCATCTTT CAVEKAWDDKIIF TRAV39*01 TRAJ30*01 15.0 1049.0 TGTGCCAGCAGCCAAGCACAGGGTTACGAGCAGTACTTC CASSQAQGYEQYF TRBV3-1*01 TRBJ2-7*01 20.0 1695.0 CAVEKAWDDKIIF_CASSQAQGYEQYF 1 4973 MART1-A28L MART1 0.5 84 NEG 84 4889 1 HomoSapiens MART1 ALGIGILTV Naive T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*02:01 B2M MHCI -10854 chip0423_868799 12.4 10.53 Chip2 T1D_4 T1D TGTGCCAGCAGCCAAGTCAACAACCCGGGGGATGGCTACACCTTC CASSQVNNPGDGYTF TRBV14*01 TRBJ1-2*01 13.0 467.0 _CASSQVNNPGDGYTF 94 3335 EBNA3A-158-166 EBV 0.88 444 NEG 87 3248 9 EBV EBNA3A QAKWRLQTL effector memory T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-B*08:01 B2M MHCI -10855 chip0423_432126 6.68 12.53 Chip2 healthy_3 healthy TGTGCTGTGAGAAGGCACCAGGCAGGAACTGCTCTGATCTTT CAVRRHQAGTALIF TRAV3*01 TRAJ15*01 43.0 2014.0 TGCAGCGCCAGGGCGCCGAACACCGGGGAGCTGTTTTTT CSARAPNTGELFF TRBV29-1*01 TRBJ2-2*01 8.0 527.0 CAVRRHQAGTALIF_CSARAPNTGELFF 1 5235 NP44-52 FLU 0.82 474 NP44-52 77 5158 7 InfluenzaA NP CTELKLSDY transitional T cells between effector and memory populations PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*01:01 B2M MHCI -10856 chip0423_876249 9.13 8.92 Chip2 healthy_4 healthy TGTGCAATGAGAGACCCCAGGACTGGGGCAAACAACCTCTTCTTT CAMRDPRTGANNLFF TRAV14/DV4*01 TRAJ36*01 74.0 2403.0 CAMRDPRTGANNLFF_ 2 3480 BZLF1-190-197 EBV 0.8 2156 NEG 75 3405 8 EBV BZLF1 RAKFKQLL effector memory T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-B*08:01 B2M MHCI -10857 chip0423_544905 -3.5 13.22 Chip2 healthy_5 healthy TGCCTCGTGGGCCCGAATTATGGAGGAAGCCAAGGAAATCTCATCTTT CLVGPNYGGSQGNLIF TRAV4*01 TRAJ42*01 58.0 1892.0 CLVGPNYGGSQGNLIF_ 1 3565 IAPP-LNH-9 IAPP 0.75 15 NEG 69 3496 1 HomoSapiens IAPP LNHLKATPI Naive T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-B*08:01 B2M MHCI -10858 chip0423_366278 12.5 10.69 Chip2 healthy_4 healthy TGTGCCAGCAGCTTAAACGTCGGGGAGGGCGCAGGAAACACCATATATTTT CASSLNVGEGAGNTIYF TRBV7-6*01 TRBJ1-3*01 1.0 110.0 _CASSLNVGEGAGNTIYF 9 2774 BZLF1-190-197 EBV 0.67 2156 NEG 82 2692 9 EBV BZLF1 RAKFKQLL effector memory T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-B*08:01 B2M MHCI -10859 chip0423_303438 8.17 10.63 Chip2 healthy_5 healthy TGCGCCAGCAGCCCTTCCGAAGGGGCGGGGGCTGGATACGAGCAGTACTTC CASSPSEGAGAGYEQYF TRBV4-1*01 TRBJ2-7*01 22.0 1049.0 _CASSPSEGAGAGYEQYF 1 4530 BZLF1-190-197 EBV 0.4 2156 NEG 74 4456 7 EBV BZLF1 RAKFKQLL transitional T cells between effector and memory populations PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-B*08:01 B2M MHCI -10860 chip0423_433515 11.1 13.66 Chip2 healthy_3 healthy TGTGTGGCGAACGGGGAAAATGCCAGACTCATGTTT CVANGENARLMF TRAV12-1*01 TRAJ31*01 19.0 1337.0 TGTGCCAGCAGTGAAATGTGGGGAGCACCCCTCCACTTT CASSEMWGAPLHF TRBV2*01 TRBJ1-6*01 28.0 1275.0 CVANGENARLMF_CASSEMWGAPLHF 1 2454 NP44-52 FLU 0.82 474 NP44-52 73 2381 11 InfluenzaA NP CTELKLSDY effector T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*01:01 B2M MHCI -10861 chip0423_579534 -1.95 11.31 Chip2 healthy_3 healthy _ 6746 4458 PGT-178 PGT 0.61 1480 NEG 70 4388 3 HomoSapiens PGT LLAGIGTVPI Naive T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*02:01 B2M MHCI -10862 chip0423_14332 11.02 12.52 Chip2 T1D_4 T1D _ 6746 2552 EBNA3A-193-201 EBV 0.84 1022 EBNA3A-193-201 88 2464 11 EBV EBNA3A FLRGRAYGL effector T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-B*08:01 B2M MHCI -10863 chip0423_365754 12.97 13.35 Chip2 healthy_4 healthy _ 6746 1582 BZLF1-190-197 EBV 1.0 2156 NEG 78 1504 11 EBV BZLF1 RAKFKQLL effector T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-B*08:01 B2M MHCI -10864 chip0423_16913 -3.91 10.13 Chip2 T1D_6 T1D TGTGCTGGGCAGCACACCCTGGGAGTAACCAGCTCAATTTT CAGQHTct?GSNQLNF TRAV35*01 TRAJ49*01 16.0 1333.0 TGTGCCAGCAGTTGGACTTATAGCAATCAGCCCCAGCATTTT CASSWTYSNQPQHF TRBV27*01 TRBJ1-5*01 40.0 2053.0 CAGQHTct?GSNQLNF_CASSWTYSNQPQHF 1 5576 GAD2-HPR-8 GAD65 0.42 9 NEG 71 5505 2 HomoSapiens GAD2 HPRYFNQL Naive T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-B*08:01 B2M MHCI -10865 chip0423_827303 9.53 13.13 Chip2 healthy_4 healthy _ 6746 2681 EBNA3A-193-201 EBV 0.79 1022 NEG 72 2609 6 EBV EBNA3A FLRGRAYGL central memory T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-B*08:01 B2M MHCI -10866 chip0423_501746 14.48 11.41 Chip2 healthy_4 healthy TGTGCTCTGAGTGAGGAAAACAGCAGTGCTTCCAGGTTGGTCTTT CALSEENSSASRLVF TRAV19*01 TRAJ3*01 29.0 2260.0 CALSEENSSASRLVF_ 1 2173 BZLF1-190-197 EBV 0.88 2156 NEG 88 2085 12 EBV BZLF1 RAKFKQLL effector T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-B*08:01 B2M MHCI -10867 chip0423_343863 5.92 12.42 Chip2 healthy_4 healthy TGTGCTCTGATGCGATACAGCACCCTCACCTTT CALMRYSTLTF TRAV9-2*01 TRAJ11*01 14.0 1313.0 TGTGCCCGTCGTCCCCTCCTAGCGCCCCAAGGCTACGCGCAGTACTTC CARRPLLAPQGYAQYF TRBV19*01 TRBJ2-7*01 2.0 68.0 CALMRYSTLTF_CARRPLLAPQGYAQYF 1 4538 M1 FLU 0.75 1250 NEG 91 4447 7 InfluenzaA M1 GILGFVFTL transitional T cells between effector and memory populations PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*02:01 B2M MHCI -10868 chip0423_837395 9.8 10.02 Chip2 healthy_4 healthy _ 6746 2604 BZLF1-190-197 EBV 1.0 2156 BZLF1-190-197 80 2524 9 EBV BZLF1 RAKFKQLL effector memory T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-B*08:01 B2M MHCI -10869 chip0423_1616 13.2 11.45 Chip2 T1D_5 T1D TGTGCCAGCAGCTCGGTCGGCAGGGAACAAGAGACCCAGTACTTC CASSSVGREQETQYF TRBV7-9*01 TRBJ2-5*01 78.0 4058.0 _CASSSVGREQETQYF 1 2720 BZLF1-190-197 EBV 1.0 2156 NEG 67 2653 9 EBV BZLF1 RAKFKQLL effector memory T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-B*08:01 B2M MHCI -10870 chip0423_396653 7.64 12.98 Chip2 healthy_3 healthy TGTGCCAGCCGTGAAATGTGGGGAGCACCCCTCCACTT CASREMt?gGSTPPL TRAV14/DV4*01 TRAJ11*01 2.0 4.0 TGTGCCAGCAGTGAAATGTGGGGAGCACCCCTCCACTTT CASSEMWGAPLHF TRBV2*01 TRBJ1-6*01 51.0 2253.0 CASREMt?gGSTPPL_CASSEMWGAPLHF 1 3503 NP44-52 FLU 0.76 474 NP44-52 87 3416 7 InfluenzaA NP CTELKLSDY transitional T cells between effector and memory populations PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*01:01 B2M MHCI -10871 chip0423_47216 11.87 7.04 Chip2 T1D_4 T1D TGTGCTCTCACTACCTATGGTCAGAATTTTGTCTTT CALTTYGQNFVF TRAV38-1*01 TRAJ26*01 10.0 1184.0 TGCAGTGCCTCTCGTGACTCCTACGAGCAGTACTTC CSASRDSYEQYF TRBV20-1*01 TRBJ2-7*01 2.0 368.0 CALTTYGQNFVF_CSASRDSYEQYF 15 4668 EBV-LMP1-1 EBV 0.56 237 NEG 101 4567 10 EBV LMP1 YLLEMLWRL effector memory T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*02:01 B2M MHCI -10872 chip0423_126949 13.21 13.07 Chip2 T1D_4 T1D TGCATCGTCAGAGAGGGAGGAGGTGCTGACGGACTCACCTTT CIVREGGGADGLTF TRAV26-1*01 TRAJ45*01 33.0 2387.0 CIVREGGGADGLTF_ 9 1827 BZLF1-190-197 EBV 0.9 2156 BZLF1-190-197 75 1752 10 EBV BZLF1 RAKFKQLL effector memory T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-B*08:01 B2M MHCI -10873 chip0423_644862 7.65 14.24 Chip2 healthy_3 healthy _ 6746 2992 NP44-52 FLU 0.86 474 NP44-52 66 2926 7 InfluenzaA NP CTELKLSDY transitional T cells between effector and memory populations PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*01:01 B2M MHCI -10874 chip0423_238326 12.23 13.34 Chip2 T1D_5 T1D TGCAGCGTCGGGACAGCCGATGGCTACACCTTC CSVGTADGYTF TRBV29-1*01 TRBJ1-2*01 19.0 1852.0 _CSVGTADGYTF 4 1780 BZLF1-190-197 EBV 1.0 2156 NEG 68 1712 11 EBV BZLF1 RAKFKQLL effector T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-B*08:01 B2M MHCI -10875 chip0423_637869 12.77 12.93 Chip2 healthy_4 healthy _ 6746 2526 BZLF1-190-197 EBV 0.67 2156 NEG 83 2443 11 EBV BZLF1 RAKFKQLL effector T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-B*08:01 B2M MHCI -10876 chip0423_664537 6.26 14.28 Chip2 healthy_3 healthy TGTGCCAGCAGTGAAATGTGGGGAGCACCCCTCCACTTT CASSEMWGAPLHF TRBV2*01 TRBJ1-6*01 16.0 834.0 _CASSEMWGAPLHF 14 5342 NP44-52 FLU 0.87 474 NP44-52 84 5258 7 InfluenzaA NP CTELKLSDY transitional T cells between effector and memory populations PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*01:01 B2M MHCI -10877 chip0423_164494 11.56 12.55 Chip2 healthy_4 healthy TGTGCCAGCAGCTCCGGACAGGCCTACGAGCAGTACTTC CASSSGQAYEQYF TRBV7-8*01 TRBJ2-7*01 9.0 519.0 _CASSSGQAYEQYF 49 2424 EBNA3A-193-201 EBV 1.0 1022 NEG 87 2337 11 EBV EBNA3A FLRGRAYGL effector T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-B*08:01 B2M MHCI -10878 chip0423_388287 12.24 13.65 Chip2 T1D_6 T1D _ 6746 1750 EBNA3A-193-201 EBV 1.0 1022 NEG 83 1667 11 EBV EBNA3A FLRGRAYGL effector T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-B*08:01 B2M MHCI -10879 chip0423_131933 15.53 8.93 Chip2 T1D_5 T1D _ 6746 4074 BZLF1-190-197 EBV 0.69 2156 NEG 69 4005 12 EBV BZLF1 RAKFKQLL effector T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-B*08:01 B2M MHCI -10880 chip0423_345032 11.26 10.17 Chip2 healthy_4 healthy TGTGCCAGCAGCTCCGGACAGGCCTACGAGCAGTACTTC CASSSGQAYEQYF TRBV7-8*01 TRBJ2-7*01 9.0 482.0 _CASSSGQAYEQYF 49 3518 EBNA3A-193-201 EBV 0.78 1022 NEG 69 3449 9 EBV EBNA3A FLRGRAYGL effector memory T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-B*08:01 B2M MHCI -10881 chip0423_109596 -0.78 7.56 Chip2 T1D_6 T1D TGTGCAATGAGCCGGGCTAACTTTGGAAATGAGAAATTAACCTTT CAMSRANFGNEKLTF TRAV12-3*01 TRAJ48*01 1.0 47.0 TGTGCCAGCAGCCAAGATCAAGGGGGTAGCACAGATACGCAGTATTTT CASSQDQGGSTDTQYF TRBV14*01 TRBJ2-3*01 11.0 323.0 CAMSRANFGNEKLTF_CASSQDQGGSTDTQYF 1 8123 PGT-178 PGT 0.46 1480 NEG 73 8050 3 HomoSapiens PGT LLAGIGTVPI Naive T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*02:01 B2M MHCI -10882 chip0423_862951 8.58 13.08 Chip2 T1D_5 T1D TGTGCAGCGGCGGAAACCTCCTACGACAAGGTGATATTT CAAAETSYDKVIF TRAV13-1*01 TRAJ50*01 1.0 45.0 CAAAETSYDKVIF_ 32 2279 BZLF1-190-197 EBV 0.67 2156 NEG 79 2200 11 EBV BZLF1 RAKFKQLL effector T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-B*08:01 B2M MHCI -10883 chip0423_823827 -2.5 13.76 Chip2 T1D_6 T1D TGTGCTCGCGACGTCTCAGGAACCTACAAATACATCTTT CARDVSGTYKYIF TRAV19*01 TRAJ40*01 1.0 76.0 TGTGCCTGGAGCGCCAGTCGCACCGGGGAGCTGTTTTTT CAWSASRTGELFF TRBV30*01 TRBJ2-2*01 15.0 764.0 CARDVSGTYKYIF_CAWSASRTGELFF 1 3476 GAD2-MMI-8 GAD65 0.88 40 NEG 68 3408 1 HomoSapiens GAD2 MMIARFKM Naive T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-B*08:01 B2M MHCI -10884 chip0423_415412 12.94 12.26 Chip2 T1D_5 T1D TGTGCCAGCAGCTTGCTCGGGGAGGGAGATCAGCCCCAGCATTTT CASSLLGEGDQPQHF TRBV7-9*01 TRBJ1-5*01 30.0 1391.0 _CASSLLGEGDQPQHF 1 2882 BZLF1-190-197 EBV 0.62 2156 NEG 73 2809 11 EBV BZLF1 RAKFKQLL effector T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-B*08:01 B2M MHCI -10885 chip0423_776815 11.21 9.56 Chip2 healthy_5 healthy TGTGCCAGCAGCCCCCTAAGGGAGGACGCCGGGGAGCTGTTTTTT CASSPLREDAGELFF TRBV7-9*01 TRBJ2-2*01 6.0 163.0 _CASSPLREDAGELFF 1 3856 BZLF1-190-197 EBV 0.5 2156 NEG 87 3769 9 EBV BZLF1 RAKFKQLL effector memory T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-B*08:01 B2M MHCI -10886 chip0423_154019 15.93 10.44 Chip2 healthy_3 healthy TGTGCCCTCACTGACAGCTGGGGGAAATTGCAGTTT CALTDSWGKLQF TRAV12-2*01 TRAJ24*01 14.0 1479.0 CALTDSWGKLQF_ 7 3342 GAD65-114-122 GAD65 0.47 63 GAD65-114-122 80 3262 12 HomoSapiens GAD65 VMNILLQYV effector T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*02:01 B2M MHCI -10887 chip0423_589334 10.98 9.89 Chip2 healthy_5 healthy _ 6746 3135 BZLF1-190-197 EBV 0.69 2156 NEG 92 3043 9 EBV BZLF1 RAKFKQLL effector memory T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-B*08:01 B2M MHCI -10888 chip0423_766168 -1.81 12.27 Chip2 T1D_6 T1D TGTGCCCGCATCGCCGGCCCCGTCGGAAACACCATATATTTT CARIAGPVGNTIYF TRBV6-1*01 TRBJ1-3*01 2.0 52.0 _CARIAGPVGNTIYF 1 3985 PGT-178 PGT 0.83 1480 PGT-178 78 3907 4 HomoSapiens PGT LLAGIGTVPI Naive T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*02:01 B2M MHCI -10889 chip0423_298067 14.57 10.26 Chip2 healthy_4 healthy _ 6746 3179 BZLF1-190-197 EBV 0.94 2156 BZLF1-190-197 81 3098 12 EBV BZLF1 RAKFKQLL effector T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-B*08:01 B2M MHCI -10890 chip0423_485057 4.8 11.8 Chip2 healthy_4 healthy TATGCTGTGGGTGCGCGTTTGGGCCCCGCGGACTCGCTTCT YAVGARtt?GPRGLAS TRAV8-6*01 TRAJ7*01 14.0 1255.0 YAVGARtt?GPRGLAS_ 1 3097 M1 FLU 1.0 1250 NEG 81 3016 6 InfluenzaA M1 GILGFVFTL central memory T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*02:01 B2M MHCI -10891 chip0423_563396 6.12 14.11 Chip2 healthy_3 healthy TGCAGTGCCGATTCCTACCGGGACATTGATAACTATGGCTACACCTTC CSADSYRDIDNYGYTF TRBV20-1*01 TRBJ1-2*01 38.0 1916.0 _CSADSYRDIDNYGYTF 8 5657 NP44-52 FLU 0.7 474 NP44-52 88 5569 7 InfluenzaA NP CTELKLSDY transitional T cells between effector and memory populations PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*01:01 B2M MHCI -10892 chip0423_537999 -2.85 11.93 Chip2 T1D_5 T1D TGTGCCAGCAGACAGGGGGCCTACACTGAAGCTTTCTTT CASRQGAYTEAFF TRBV2*01 TRBJ1-1*01 4.0 173.0 _CASRQGAYTEAFF 1 4402 ZNT8-YAK-9 ZNT8 0.45 59 NEG 64 4338 1 HomoSapiens ZNT8 YAKWKLCSA Naive T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-B*08:01 B2M MHCI -10893 chip0423_92974 -2.9 14.06 Chip2 T1D_4 T1D TGTGCCAGCAGTAAAGCCGGGATGGGCACGAGCACAGATACGCAGTATTTT CASSKAGMGTSTDTQYF TRBV6-1*01 TRBJ2-3*01 37.0 991.0 _CASSKAGMGTSTDTQYF 1 4351 PGT-178 PGT 0.75 1480 NEG 81 4270 1 HomoSapiens PGT LLAGIGTVPI Naive T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*02:01 B2M MHCI -10894 chip0423_490880 -3.97 9.61 Chip2 healthy_3 healthy TGTGCTGGAGCTCGGGGGGTCCGGGAGCCCAGAAGCTGGTATTT CAGARGVc?gGAQKLVF TRAV27*01 TRAJ54*01 44.0 1080.0 CAGARGVc?gGAQKLVF_ 1 4362 HCVNS4B-1807-1816 HCV 0.65 74 NEG 91 4271 4 HCV NS4B LLFNILGGWV Naive T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*02:01 B2M MHCI -10895 chip0423_361940 9.58 10.34 Chip2 healthy_4 healthy _ 6746 6824 BZLF1-190-197 EBV 0.8 2156 NEG 85 6739 9 EBV BZLF1 RAKFKQLL effector memory T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-B*08:01 B2M MHCI -10896 chip0423_574027 10.55 11.26 Chip2 healthy_5 healthy _ 6746 2933 BZLF1-190-197 EBV 0.58 2156 NEG 77 2856 9 EBV BZLF1 RAKFKQLL effector memory T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-B*08:01 B2M MHCI -10897 chip0423_683524 9.94 10.77 Chip2 healthy_3 healthy TGTACCGTGTGGGGCCCCGACAGGCTCATCTTT CTVWGPDRLIF TRAV8-1*01 TRAJ34*01 16.0 1665.0 CTVWGPDRLIF_ 1 5078 EBV-BRLF1 EBV 0.56 1264 NEG 70 5008 9 EBV BRLF1 YVLDHLIVV effector memory T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*02:01 B2M MHCI -10898 chip0423_408587 12.96 11.13 Chip2 T1D_4 T1D TGTGCCCCTTCTCTGAATTCTGGGGGTTACCAGAAAGTTACCTTT CAPSLNSGGYQKVTF TRAV13-1*01 TRAJ13*01 3.0 86.0 TGTGCCAGCAGTGTGGTAGGGGGCGACTATGGCTACACCTTC CASSVVGGDYGYTF TRBV2*01 TRBJ1-2*01 1.0 35.0 CAPSLNSGGYQKVTF_CASSVVGGDYGYTF 5 2768 EBNA3A-193-201 EBV 0.5 1022 NEG 82 2686 9 EBV EBNA3A FLRGRAYGL effector memory T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-B*08:01 B2M MHCI -10899 chip0423_728880 5.31 10.39 Chip2 healthy_3 healthy TGTGCAGCAAGCGGGGGTAGCAACTATAAACTGACATTT CAASGGSNYKLTF TRAV29/DV5*01 TRAJ53*01 1.0 82.0 CAASGGSNYKLTF_ 3 8717 PB1-590-599 FLU 0.67 37 PB1-590-599 71 8646 6 InfluenzaA PB1 LVSDGGPNLY central memory T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*01:01 B2M MHCI -10900 chip0423_236808 -3.16 10.9 Chip2 healthy_4 healthy _ 6746 5526 EBNA3A-158-166 EBV 0.9 444 NEG 82 5444 4 EBV EBNA3A QAKWRLQTL Naive T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-B*08:01 B2M MHCI -10901 chip0423_297897 -0.85 10.36 Chip2 T1D_5 T1D _ 6746 5018 GAD2-MMI-8 GAD65 0.81 40 GAD2-MMI-8 81 4937 3 HomoSapiens GAD2 MMIARFKM Naive T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-B*08:01 B2M MHCI -10902 chip0423_840 7.39 12.05 Chip2 healthy_3 healthy _ 6746 5001 NP44-52 FLU 0.81 474 NP44-52 95 4906 7 InfluenzaA NP CTELKLSDY transitional T cells between effector and memory populations PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*01:01 B2M MHCI -10903 chip0423_880450 6.47 13.15 Chip2 healthy_4 healthy _ 6746 3626 M1 FLU 0.79 1250 M1 72 3554 7 InfluenzaA M1 GILGFVFTL transitional T cells between effector and memory populations PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*02:01 B2M MHCI -10904 chip0423_148795 11.64 10.9 Chip2 healthy_4 healthy _ 6746 4045 BZLF1-190-197 EBV 0.83 2156 NEG 82 3963 9 EBV BZLF1 RAKFKQLL effector memory T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-B*08:01 B2M MHCI -10905 chip0423_27091 10.12 10.41 Chip2 healthy_4 healthy _ 6746 3949 BZLF1-190-197 EBV 0.91 2156 NEG 97 3852 9 EBV BZLF1 RAKFKQLL effector memory T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-B*08:01 B2M MHCI -10906 chip0423_14854 6.33 12.86 Chip2 healthy_3 healthy TGTGTGGTGAACGGGGAAAATGCCAGACTCATGTTT CVVNGENARLMF TRAV12-1*01 TRAJ31*01 5.0 337.0 TGTGCCAGCAGTGAAATGTGGGGAGCACCCCTCCACTTT CASSEMWGAPLHF TRBV2*01 TRBJ1-6*01 7.0 549.0 CVVNGENARLMF_CASSEMWGAPLHF 12 4427 NP44-52 FLU 0.8 474 NP44-52 79 4348 7 InfluenzaA NP CTELKLSDY transitional T cells between effector and memory populations PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*01:01 B2M MHCI -10907 chip0423_10441 6.85 12.79 Chip2 healthy_3 healthy _ 6746 4008 NP44-52 FLU 0.81 474 NP44-52 72 3936 7 InfluenzaA NP CTELKLSDY transitional T cells between effector and memory populations PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*01:01 B2M MHCI -10908 chip0423_276706 14.75 10.5 Chip2 healthy_5 healthy _ 6746 2552 LMP2A-CPL EBV 0.67 44 NEG 65 2487 12 EBV LMP2A CPLSKILL effector T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-B*08:01 B2M MHCI -10909 chip0423_62825 11.24 11.75 Chip2 healthy_4 healthy _ 6746 2246 BZLF1-190-197 EBV 1.0 2156 NEG 84 2162 9 EBV BZLF1 RAKFKQLL effector memory T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-B*08:01 B2M MHCI -10910 chip0423_528107 5.52 9.11 Chip2 healthy_3 healthy TGTGCTTCGGAAGGGCGTTCTGGATACAGCACCCTCACCTTT CASEGRSGYSTLTF TRAV17*01 TRAJ11*01 6.0 122.0 TGTGCCAGCAGTAAACAGGGAGGAGGGGGTGGCTACACCTTC CASSKQGGGGGYTF TRBV6-1*01 TRBJ1-2*01 13.0 324.0 CASEGRSGYSTLTF_CASSKQGGGGGYTF 1 4135 EBV-LMP2-FLY EBV 0.62 355 NEG 70 4065 6 EBV LMP2 FLYALALLL central memory T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*02:01 B2M MHCI -10911 chip0423_137536 4.93 11.29 Chip2 healthy_4 healthy _ 6746 3217 INS-14-23 INS 1.0 9 NEG 56 3161 6 HomoSapiens INS LALWGPDPAA central memory T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*02:01 B2M MHCI -10912 chip0423_164414 13.62 13.67 Chip2 healthy_3 healthy TGTGCCAGTAGTCGCTATTCCGTAGATACGCAGCATTTT CASSRYSVDTQHF TRBV19*01 TRBJ2-3*01 1.0 27.0 _CASSRYSVDTQHF 1 910 M1 FLU 0.43 1250 NEG 77 833 11 InfluenzaA M1 GILGFVFTL effector T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*02:01 B2M MHCI -10913 chip0423_404206 -4.37 11.16 Chip2 healthy_3 healthy TGCATCGCCCCCAACTGGGGCAAACAACCTCTTCTTT CIAPNW??gANNLFF TRAV26-1*01 TRAJ36*01 8.0 491.0 TGTGCCAGCAGCTTGTGGGATTCCTACGAGCAGTACTTC CASSLWDSYEQYF TRBV5-6*01 TRBJ2-7*01 9.0 348.0 CIAPNW??gANNLFF_CASSLWDSYEQYF 1 4006 PGT-178 PGT 0.73 1480 PGT-178 84 3922 1 HomoSapiens PGT LLAGIGTVPI Naive T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*02:01 B2M MHCI -10914 chip0423_343616 -3.39 8.52 Chip2 healthy_5 healthy _ 6746 4818 NP44-52 FLU 0.74 474 NP44-52 64 4754 2 InfluenzaA NP CTELKLSDY Naive T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*01:01 B2M MHCI -10915 chip0423_23240 10.56 13.74 Chip2 healthy_3 healthy _ 6746 2269 NP44-52 FLU 0.53 474 NP44-52 71 2198 11 InfluenzaA NP CTELKLSDY effector T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*01:01 B2M MHCI -10916 chip0423_321977 6.37 13.88 Chip2 healthy_3 healthy _ 6746 3901 NP44-52 FLU 0.62 474 NP44-52 86 3815 7 InfluenzaA NP CTELKLSDY transitional T cells between effector and memory populations PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*01:01 B2M MHCI -10917 chip0423_135279 11.6 11.82 Chip2 healthy_4 healthy TGCATCCTTCCCCTAGCTGGTGGTACTAGCTATGGAAAGCTGACATTT CILPLAGGTSYGKLTF TRAV26-2*01 TRAJ52*01 38.0 1254.0 CILPLAGGTSYGKLTF_ 55 2211 EBNA3A-193-201 EBV 1.0 1022 NEG 82 2129 10 EBV EBNA3A FLRGRAYGL effector memory T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-B*08:01 B2M MHCI -10918 chip0423_128734 11.3 11.84 Chip2 T1D_5 T1D TATGCCAGCAGCCCATTGGGGATTCCAGCGAACACTGAAGCTTTCTTT YASSPLGIPANTEAFF TRBV7-9*01 TRBJ1-1*01 28.0 822.0 _YASSPLGIPANTEAFF 1 1552 BZLF1-190-197 EBV 0.46 2156 NEG 81 1471 9 EBV BZLF1 RAKFKQLL effector memory T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-B*08:01 B2M MHCI -10919 chip0423_484221 -3.41 9.51 Chip2 healthy_4 healthy TGTGCCAGCAGCGTAGACCCAGGGGAAAACACCGGGGAGCTGTTTTTT CASSVDPGENTGELFF TRBV9*01 TRBJ2-2*01 4.0 62.0 _CASSVDPGENTGELFF 1 4371 MART1-ALA MART1 0.62 269 NEG 75 4296 2 HomoSapiens MART1 ALAGIGILTV Naive T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*02:01 B2M MHCI -10920 chip0423_431933 -2.63 14.8 Chip2 healthy_3 healthy TGTGGAATGAGTATGTCTAACTTTGGGTATGTGAAATTAACCTTT CGMSMSNFGYVKLTF TRAV12-3*01 TRAJ48*01 11.0 353.0 TGCAGCGGGGGACAGTCCAGGGGGAAGAACACTGAAGCTTTCTTT CSGGQSRGKNTEAFF TRBV29-1*01 TRBJ1-1*01 62.0 2690.0 CGMSMSNFGYVKLTF_CSGGQSRGKNTEAFF 1 2676 PGT-178 PGT 0.56 1480 NEG 80 2596 1 HomoSapiens PGT LLAGIGTVPI Naive T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*02:01 B2M MHCI -10921 chip0423_345160 -0.47 8.72 Chip2 healthy_5 healthy TGCAGCGCCGGCAGGGACGGGGCTAATGAACAACTGTTTTTT CSAGRDGANEQLFF TRBV29-1*01 TRBJ1-4*01 4.0 89.0 _CSAGRDGANEQLFF 1 5319 NP44-52 FLU 0.52 474 NEG 89 5230 4 InfluenzaA NP CTELKLSDY Naive T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*01:01 B2M MHCI -10922 chip0423_841907 11.85 13.56 Chip2 T1D_5 T1D TGTGCCAGCAGTCCCCCGGGGAGAAATGAAAAACTGTTTTTT CASSPPGRNEKLFF TRBV12-3*01,TRBV12-4*01 TRBJ1-4*01 23.0 926.0 _CASSPPGRNEKLFF 11 1077 BZLF1-190-197 EBV 0.57 2156 NEG 71 1006 11 EBV BZLF1 RAKFKQLL effector T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-B*08:01 B2M MHCI -10923 chip0423_80727 -4.03 12.58 Chip2 T1D_6 T1D TGTGCCGTGAAGACAGGCTTTCAGAAACTTGTATTT CAVKTGFQKLVF TRAV12-2*01 TRAJ8*01 1.0 13.0 TGTGCCAGTAGTATCAGGGAGGAGCGGACTGAAGCTTTCTTT CASSIREERTEAFF TRBV19*01 TRBJ1-1*01 21.0 1183.0 CAVKTGFQKLVF_CASSIREERTEAFF 1 3696 NP44-52 FLU 0.63 474 NEG 77 3619 1 InfluenzaA NP CTELKLSDY Naive T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*01:01 B2M MHCI -10924 chip0423_724117 -3.88 9.51 Chip2 healthy_3 healthy TGTGCAGCAACGGAAACCTCCTACGACAAGGTGATATTT CAATETSYDKVIF TRAV13-1*01 TRAJ50*01 3.0 149.0 TGTGCTCTGATTTTTTTCTGGTGGCTACAATAAGCTGATTTTT CALIFFW??tGYNKLIF TRAV19*01 TRAJ4*01 3.0 115.0 0.43 TGTGCCAGCAGACCCAGGGTGAATGAGCAGTTCTTC CASRPRVNEQFF TRBV28*01 TRBJ2-1*01 8.0 630.0 CAATETSYDKVIF_CASRPRVNEQFF 1 4869 PGT-178 PGT 0.68 1480 PGT-178 77 4792 4 HomoSapiens PGT LLAGIGTVPI Naive T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*02:01 B2M MHCI -10925 chip0423_497820 -1.79 6.86 Chip2 healthy_5 healthy TGTGCCAGCAGCTACGGGACTAGGGGCGAGCAGTACTTC CASSYGTRGEQYF TRBV5-6*01 TRBJ2-7*01 34.0 1989.0 _CASSYGTRGEQYF 1 6280 Nef13-20 HIV 0.71 19 NEG 83 6197 3 HIV-1 Nef WPTVRERM Naive T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-B*08:01 B2M MHCI -10926 chip0423_499552 7.37 12.76 Chip2 healthy_3 healthy TGTGCCAGTAGCGATCTTAGACAGACAAGCTCCTACAATGAGCAGTTCTTC CASSDLRQTSSYNEQFF TRBV19*01 TRBJ2-1*01 5.0 100.0 _CASSDLRQTSSYNEQFF 3 4093 NP44-52 FLU 0.86 474 NEG 60 4033 7 InfluenzaA NP CTELKLSDY transitional T cells between effector and memory populations PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*01:01 B2M MHCI -10927 chip0423_262680 5.6 9.76 Chip2 T1D_4 T1D _ 6746 7019 EBV-LMP1-1 EBV 0.65 237 NEG 87 6932 6 EBV LMP1 YLLEMLWRL central memory T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*02:01 B2M MHCI -10928 chip0423_174533 -2.93 9.28 Chip2 healthy_3 healthy _ 6746 5288 GP160-814-822 HIV 0.53 7 NEG 101 5187 2 HIV-1 GP160 LLNATDIAV Naive T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*02:01 B2M MHCI -10929 chip0423_283707 6.61 12.14 Chip2 healthy_3 healthy _ 6746 7214 NP44-52 FLU 0.74 474 NP44-52 79 7135 7 InfluenzaA NP CTELKLSDY transitional T cells between effector and memory populations PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*01:01 B2M MHCI -10930 chip0423_671096 7.1 12.46 Chip2 healthy_3 healthy TGTGCTGCGCAGGCCGCGGGTCTCCGGTGACCGGTTCTGTTTT CAAQAAG??cSGDRFCF TRAV20*01 TRAJ49*01 16.0 792.0 TGTGCCAGTAGTCCACTCCTGGCGACCCACGGCTACGAGCAGTACTTC CASSPLLATHGYEQYF TRBV19*01 TRBJ2-7*01 2.0 48.0 CAAQAAG??cSGDRFCF_CASSPLLATHGYEQYF 1 5784 NP44-52 FLU 0.55 474 NP44-52 78 5706 7 InfluenzaA NP CTELKLSDY transitional T cells between effector and memory populations PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*01:01 B2M MHCI -10931 chip0423_257189 10.72 12.41 Chip2 healthy_4 healthy TGTGCCAGCCGGGTGGGCCGAGAACCCACCGGGGCGCTGTTTGTT CASRVGREPTGALFV TRBV3-1*01 TRBJ2-2*01 4.0 164.0 _CASRVGREPTGALFV 1 2571 BZLF1-190-197 EBV 1.0 2156 NEG 79 2492 11 EBV BZLF1 RAKFKQLL effector T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-B*08:01 B2M MHCI -10932 chip0423_522605 12.9 10.79 Chip2 T1D_5 T1D _ 6746 3031 BZLF1-190-197 EBV 1.0 2156 NEG 86 2945 9 EBV BZLF1 RAKFKQLL effector memory T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-B*08:01 B2M MHCI -10933 chip0423_442050 13.79 10.78 Chip2 healthy_4 healthy _ 6746 3107 EBV-BRLF1 EBV 0.87 1264 NEG 92 3015 12 EBV BRLF1 YVLDHLIVV effector T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*02:01 B2M MHCI -10934 chip0423_605465 7.39 8.73 Chip2 tet_neg _ 6746 9404 BZLF1-190-197 EBV 1.0 2156 NEG 70 9334 8 EBV BZLF1 RAKFKQLL effector memory T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-B*08:01 B2M MHCI -10935 chip0423_8013 -4.4 8.31 Chip2 T1D_4 T1D TGTGCTCTGAGTGAGGCGGGATACTCTGGGGCTGGGAGTTACCAACTCACTTTC CALSEAGYSGAGSYQLTF TRAV19*01 TRAJ28*01 111.0 3647.0 TGTGCCAGCAGCCGTCGACAGGGTCCCTACAATGAGCAGTTCTTC CASSRRQGPYNEQFF TRBV3-1*01 TRBJ2-1*01 9.0 926.0 CALSEAGYSGAGSYQLTF_CASSRRQGPYNEQFF 1 3865 EBNA3A-158-166 EBV 0.71 444 NEG 61 3804 2 EBV EBNA3A QAKWRLQTL Naive T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-B*08:01 B2M MHCI -10936 chip0423_377121 6.87 12.48 Chip2 healthy_3 healthy _ 6746 5003 NP44-52 FLU 0.72 474 NP44-52 86 4917 7 InfluenzaA NP CTELKLSDY transitional T cells between effector and memory populations PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*01:01 B2M MHCI -10937 chip0423_666370 6.1 13.37 Chip2 healthy_3 healthy TGTGCTGTTGAAGTCGACAAGCTCATCTTT CAVEVDKLIF TRAV41*01 TRAJ34*01 7.0 675.0 CAVEVDKLIF_ 2 6129 NP44-52 FLU 0.95 474 NP44-52 78 6051 7 InfluenzaA NP CTELKLSDY transitional T cells between effector and memory populations PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*01:01 B2M MHCI -10938 chip0423_519627 -3.87 12.2 Chip2 healthy_3 healthy _ 6746 3895 INS-6-16 INS 1.0 20 NEG 66 3829 1 HomoSapiens INS RLLPLLALLAL Naive T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*02:01 B2M MHCI -10939 chip0423_461862 7.91 11.16 Chip2 healthy_3 healthy TGTGCAGCAAGTATGGGATATGGAAACAAACTGGTCTTT CAASMGYGNKLVF TRAV13-1*01 TRAJ47*01 4.0 54.0 CAASMGYGNKLVF_ 4 5654 NP44-52 FLU 0.44 474 NP44-52 76 5578 7 InfluenzaA NP CTELKLSDY transitional T cells between effector and memory populations PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*01:01 B2M MHCI -10940 chip0423_439770 12.2 9.03 Chip2 healthy_3 healthy _ 6746 3076 GAD65-114-122 GAD65 0.91 63 NEG 77 2999 10 HomoSapiens GAD65 VMNILLQYV effector memory T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*02:01 B2M MHCI -10941 chip0423_500927 -3.15 10.73 Chip2 T1D_6 T1D _ 6746 4371 EBV-BRLF1 EBV 0.6 1264 NEG 66 4305 2 EBV BRLF1 YVLDHLIVV Naive T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*02:01 B2M MHCI -10942 chip0423_15619 7.98 11.48 Chip2 T1D_5 T1D TGTGCCAGCTCCCAGTTGGGGGGAGTTTACAATGAGCAGTTCTTC CASSQLGGVYNEQFF TRBV7-9*01 TRBJ2-1*01 10.0 460.0 _CASSQLGGVYNEQFF 13 5399 BZLF1-190-197 EBV 0.53 2156 BZLF1-190-197 78 5321 7 EBV BZLF1 RAKFKQLL transitional T cells between effector and memory populations PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-B*08:01 B2M MHCI -10943 chip0423_242017 -4.05 7.29 Chip2 T1D_6 T1D _ 6746 6496 GAD2-TLK-8 GAD65 0.41 11 NEG 82 6414 2 HomoSapiens GAD2 TLKKMREI Naive T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-B*08:01 B2M MHCI -10944 chip0423_38938 6.47 9.75 Chip2 T1D_4 T1D TGTGCCAGCAGTTACTCAAGTACAGGGGAGTACTTC CASSYSSTGEYF TRBV6-2*01,TRBV6-3*01 TRBJ2-7*01 15.0 753.0 _CASSYSSTGEYF 32 13337 EBV-LMP1-1 EBV 0.57 237 NEG 85 13252 6 EBV LMP1 YLLEMLWRL central memory T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*02:01 B2M MHCI -10945 chip0423_741763 8.09 11.82 Chip2 healthy_3 healthy _ 6746 4814 NP44-52 FLU 0.73 474 NP44-52 74 4740 7 InfluenzaA NP CTELKLSDY transitional T cells between effector and memory populations PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*01:01 B2M MHCI -10946 chip0423_565248 11.62 7.83 Chip2 T1D_5 T1D TGTGCAGCAACGGAAACCTCCTACGACAAGGTGATATTT CAATETSYDKVIF TRAV13-1*01 TRAJ50*01 1.0 11.0 TGTGCCAGCAGCTTAGGGCAAGCCTACGAGCAGTACTTC CASSLGQAYEQYF TRBV7-8*01 TRBJ2-7*01 1.0 31.0 CAATETSYDKVIF_CASSLGQAYEQYF 1 3481 BZLF1-190-197 EBV 0.86 2156 NEG 69 3412 10 EBV BZLF1 RAKFKQLL effector memory T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-B*08:01 B2M MHCI -10947 chip0423_236853 -1.49 10.33 Chip2 healthy_4 healthy TGTGCCACCCCTAGCGCAGATACGCAGTCTTTT CATPSADTQSF TRBV6-1*01 TRBJ2-3*01 7.0 538.0 _CATPSADTQSF 1 4764 PGT-178 PGT 0.89 1480 NEG 67 4697 3 HomoSapiens PGT LLAGIGTVPI Naive T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*02:01 B2M MHCI -10948 chip0423_45661 9.11 9.17 Chip2 T1D_4 T1D TGTGCAGCAACGGAAACCTCCTACGACAAGGTGATATTT CAATETSYDKVIF TRAV13-1*01 TRAJ50*01 10.0 584.0 TGTGCCGGCTGTGGCAGGGGGTCCCCTGAAGCTTTCTTT CAGCGRGSPEAFF TRBV25-1*01 TRBJ1-1*01 2.0 69.0 CAATETSYDKVIF_CAGCGRGSPEAFF 1 5878 EBNA3A-193-201 EBV 0.63 1022 EBNA3A-193-201 81 5797 8 EBV EBNA3A FLRGRAYGL effector memory T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-B*08:01 B2M MHCI -10949 chip0423_401345 4.79 10.03 Chip2 T1D_6 T1D TGTGCCAGCAGCCATGGGGGCTCCTACGAGCAGTACTTC CASSHGGSYEQYF TRBV6-1*01 TRBJ2-7*01 9.0 413.0 _CASSHGGSYEQYF 4 3907 MART1-A27L MART1 1.0 16 NEG 80 3827 6 HomoSapiens MART1 ELAGIGILTV central memory T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*02:01 B2M MHCI -10950 chip0423_92867 7.02 13.62 Chip2 healthy_3 healthy TGTGCCAGCAGTGAAATGTGGGGAGCACCCCTCCACTTT CASSEMWGAPLHF TRBV2*01 TRBJ1-6*01 20.0 1257.0 _CASSEMWGAPLHF 14 4638 NP44-52 FLU 0.74 474 NP44-52 79 4559 7 InfluenzaA NP CTELKLSDY transitional T cells between effector and memory populations PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*01:01 B2M MHCI -10951 chip0423_698156 11.53 8.83 Chip2 healthy_4 healthy TGTGCCAGCAGCACGACCCGCGCAGGGACTTGGCCCCTCCACTTT CASSTTRAGTWPLHF TRBV7-9*01 TRBJ1-6*01 30.0 1391.0 _CASSTTRAGTWPLHF 18 3863 BZLF1-190-197 EBV 0.83 2156 NEG 92 3771 10 EBV BZLF1 RAKFKQLL effector memory T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-B*08:01 B2M MHCI -10952 chip0423_320253 7.31 12.55 Chip2 healthy_4 healthy TGTGCCAGCAGCCTGGCGATAGGGGGCTCCTACGAGCAGTACTTC CASSLAIGGSYEQYF TRBV28*01 TRBJ2-7*01 28.0 1676.0 _CASSLAIGGSYEQYF 1 2842 PGT-178 PGT 0.59 1480 PGT-178 77 2765 7 HomoSapiens PGT LLAGIGTVPI transitional T cells between effector and memory populations PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*02:01 B2M MHCI -10953 chip0423_449324 9.06 9.8 Chip2 T1D_5 T1D TGTGCAGCAAGGGAAACCTCCTACGACAAGGTGATATTT CAARETSYDKVIF TRAV13-1*01 TRAJ50*01 36.0 2135.0 TGTGCCAGCAGCCCGTTGGGCACAGCCGACTCTGGAAACACCATATATTTT CASSPLGTADSGNTIYF TRBV11-1*01 TRBJ1-3*01 79.0 1703.0 CAARETSYDKVIF_CASSPLGTADSGNTIYF 4 3823 BZLF1-190-197 EBV 0.56 2156 NEG 74 3749 8 EBV BZLF1 RAKFKQLL effector memory T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-B*08:01 B2M MHCI -10954 chip0423_60580 -2.39 13.75 Chip2 T1D_4 T1D TGTGCCAGCCGTCCTTCTTGGCCGTCTAATGAACACCTGTTTTTT CASRPSWPSNEHLFF TRBV12-3*01,TRBV12-4*01 TRBJ1-4*01 5.0 96.0 _CASRPSWPSNEHLFF 1 3211 PGT-178 PGT 0.78 1480 NEG 76 3135 1 HomoSapiens PGT LLAGIGTVPI Naive T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*02:01 B2M MHCI -10955 chip0423_708225 -1.23 10.38 Chip2 healthy_3 healthy TGTGCCATCACTACCTGCACTCCCAGTGGCCTCACCTTT CAITTCTPSGLTF TRAV12-2*01 TRAJ44*01 4.0 332.0 CGTGCCGTGAGTACCGGGACTGCCTGTGCACTCCCTTTT RAVSTGTACALPF TRAV12-2*01 TRAJ44*01 2.0 11.0 0.22 CAITTCTPSGLTF_ 1 6289 PGT-178 PGT 0.96 1480 PGT-178 70 6219 7 HomoSapiens PGT LLAGIGTVPI transitional T cells between effector and memory populations PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*02:01 B2M MHCI -10956 chip0423_868442 -1.5 9.38 Chip2 healthy_4 healthy _ 6746 5857 PGT-178 PGT 0.94 1480 PGT-178 73 5784 3 HomoSapiens PGT LLAGIGTVPI Naive T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*02:01 B2M MHCI -10957 chip0423_96459 10.87 10.18 Chip2 T1D_5 T1D TGTGCTCTGCGTGCGGGTGACATGCGCTTT CALRAGDMRF TRAV9-2*01 TRAJ43*01 2.0 146.0 TGTGCCAGCACCCCCCTGGGTCAGGCCTCTGGAAACACCATATATTTT CASTPLGQASGNTIYF TRBV7-9*01 TRBJ1-3*01 3.0 51.0 CALRAGDMRF_CASTPLGQASGNTIYF 1 3143 BZLF1-190-197 EBV 0.86 2156 NEG 73 3070 9 EBV BZLF1 RAKFKQLL effector memory T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-B*08:01 B2M MHCI -10958 chip0423_238135 13.12 7.05 Chip2 T1D_6 T1D _ 6746 3607 EBNA3A-193-201 EBV 0.94 1022 EBNA3A-193-201 73 3534 10 EBV EBNA3A FLRGRAYGL effector memory T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-B*08:01 B2M MHCI -10959 chip0423_655724 13.46 11.46 Chip2 T1D_6 T1D TGTGCCAGCAGCGTTAGCGGGGCCCCCTACGAGCAGTACTTC CASSVSGAPYEQYF TRBV9*01 TRBJ2-7*01 13.0 826.0 _CASSVSGAPYEQYF 21 2671 EBNA3A-193-201 EBV 0.4 1022 NEG 95 2576 12 EBV EBNA3A FLRGRAYGL effector T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-B*08:01 B2M MHCI -10960 chip0423_536102 13.35 11.64 Chip2 healthy_4 healthy _ 6746 2224 EBNA3A-193-201 EBV 0.82 1022 NEG 86 2138 12 EBV EBNA3A FLRGRAYGL effector T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-B*08:01 B2M MHCI -10961 chip0423_860702 -2.62 15.14 Chip2 T1D_6 T1D TGTGCCAGTAGACAGGGGTGGGAGACCCAGTACTTC CASRQGWETQYF TRBV27*01 TRBJ2-5*01 21.0 1422.0 _CASRQGWETQYF 1 1962 ZNT8-YAK-9 ZNT8 0.55 59 NEG 83 1879 1 HomoSapiens ZNT8 YAKWKLCSA Naive T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-B*08:01 B2M MHCI -10962 chip0423_226499 12.13 12.38 Chip2 healthy_4 healthy _ 6746 2483 BZLF1-190-197 EBV 0.83 2156 NEG 72 2411 11 EBV BZLF1 RAKFKQLL effector T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-B*08:01 B2M MHCI -10963 chip0423_556677 13.84 8.19 Chip2 T1D_5 T1D TGTGCCAGCAGCCCTGGGACTAGCGAAACCGGGGAGCTGTTTTTT CASSPGTSETGELFF TRBV12-3*01,TRBV12-4*01 TRBJ2-2*01 21.0 1012.0 _CASSPGTSETGELFF 2 2782 BZLF1-190-197 EBV 0.7 2156 NEG 94 2688 10 EBV BZLF1 RAKFKQLL effector memory T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-B*08:01 B2M MHCI -10964 chip0423_706356 11.09 8.59 Chip2 healthy_4 healthy _ 6746 5313 BZLF1-190-197 EBV 0.62 2156 NEG 82 5231 10 EBV BZLF1 RAKFKQLL effector memory T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-B*08:01 B2M MHCI -10965 chip0423_588140 11.9 8.41 Chip2 healthy_4 healthy _ 6746 3287 EBNA3A-193-201 EBV 1.0 1022 NEG 96 3191 10 EBV EBNA3A FLRGRAYGL effector memory T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-B*08:01 B2M MHCI -10966 chip0423_40838 9.61 8.51 Chip2 healthy_4 healthy TGTGCAGCAAGTGAAACCTCCTACGACAAGATGATATTT CAASETSYDKMIF TRAV13-1*01 TRAJ50*01 37.0 2018.0 TGTGCCAGCAGCACGACCCGCGCAGGGACTTGGCCCCTCCACTTT CASSTTRAGTWPLHF TRBV7-9*01 TRBJ1-6*01 1.0 45.0 CAASETSYDKMIF_CASSTTRAGTWPLHF 1 6078 BZLF1-190-197 EBV 0.57 2156 NEG 69 6009 8 EBV BZLF1 RAKFKQLL effector memory T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-B*08:01 B2M MHCI -10967 chip0423_741819 -3.52 13.31 Chip2 T1D_4 T1D TGTGCCACCAGTGACCTTACAGGGTCAGATACGCAGTATTTT CATSDLTGSDTQYF TRBV24-1*01 TRBJ2-3*01 7.0 275.0 _CATSDLTGSDTQYF 1 3679 PGT-178 PGT 0.71 1480 NEG 84 3595 1 HomoSapiens PGT LLAGIGTVPI Naive T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*02:01 B2M MHCI -10968 chip0423_356342 -2.11 11.88 Chip2 T1D_4 T1D TGTGCCAGCAGTTTGGATTGGGGGAACACTGAAGCTTTCTTT CASSLDWGNTEAFF TRBV27*01 TRBJ1-1*01 46.0 2407.0 _CASSLDWGNTEAFF 1 3998 EBV-LMP1-1 EBV 0.62 237 NEG 69 3929 1 EBV LMP1 YLLEMLWRL Naive T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*02:01 B2M MHCI -10969 chip0423_206338 -3.57 9.2 Chip2 healthy_5 healthy TGTGCTCTGAGTGAGGCGGGTAACCAGGGAGGAAAGCTTATCTTC CALSEAGNQGGKLIF TRAV19*01 TRAJ23*01 1.0 48.0 CALSEAGNQGGKLIF_ 1 6278 ZNT8-PTE-9 ZNT8 0.62 18 ZNT8-PTE-9 64 6214 2 HomoSapiens ZNT8 PTEKGANEY Naive T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*01:01 B2M MHCI -10970 chip0423_88634 6.24 14.26 Chip2 healthy_3 healthy TGCGCTGATTACAGCAGTGCTTCCAAGATAATCTTT CADYSSASKIIF TRAV1-1*01 TRAJ3*01 13.0 1571.0 TGCGCCAGCAGCCAAGATGGACTAGCGGCAACTAGCACAGATACGCAGTATTTT CASSQDGLAATSTDTQYF TRBV4-1*01 TRBJ2-3*01 16.0 448.0 CADYSSASKIIF_CASSQDGLAATSTDTQYF 4 5716 NP44-52 FLU 0.54 474 NEG 88 5628 7 InfluenzaA NP CTELKLSDY transitional T cells between effector and memory populations PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*01:01 B2M MHCI -10971 chip0423_589490 -0.11 7.93 Chip2 T1D_6 T1D TGTGCCAGCAGCTTCAGAGGGTACTACGAGCAGTACTTC CASSFRGYYEQYF TRBV13*01 TRBJ2-7*01 9.0 509.0 _CASSFRGYYEQYF 1 7107 PGT-178 PGT 0.61 1480 PGT-178 71 7036 4 HomoSapiens PGT LLAGIGTVPI Naive T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*02:01 B2M MHCI -10972 chip0423_75913 10.24 11.88 Chip2 healthy_4 healthy TGCGCCAACAGCCAAGATACCAGGGGTAACACCGGGGAGCTGTTTTTT CANSQDTRGNTGELFF TRBV4-3*01 TRBJ2-2*01 4.0 53.0 _CANSQDTRGNTGELFF 1 3120 PGT-178 PGT 1.0 1480 NEG 88 3032 9 HomoSapiens PGT LLAGIGTVPI effector memory T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*02:01 B2M MHCI -10973 chip0423_419451 13.9 11.15 Chip2 healthy_4 healthy TGTGCCAGCAGCTCCGGACAGGCCTACGAGCAGTACTTC CASSSGQAYEQYF TRBV7-8*01 TRBJ2-7*01 15.0 731.0 _CASSSGQAYEQYF 49 2848 EBNA3A-193-201 EBV 0.67 1022 NEG 86 2762 12 EBV EBNA3A FLRGRAYGL effector T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-B*08:01 B2M MHCI -10974 chip0423_518865 12.61 8.42 Chip2 T1D_5 T1D TGTGCAGCAAGTGAAACCTCCTACGACAAGGTGATATTT CAASETSYDKVIF TRAV13-1*01 TRAJ50*01 17.0 1406.0 CAASETSYDKVIF_ 51 2602 BZLF1-190-197 EBV 0.48 2156 NEG 82 2520 10 EBV BZLF1 RAKFKQLL effector memory T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-B*08:01 B2M MHCI -10975 chip0423_300714 12.48 13.24 Chip2 T1D_4 T1D TGTGCCAGCAGCTTAGCGGTCGGAGAAGGGCCCCAGCATTTT CASSLAVGEGPQHF TRBV7-9*01 TRBJ1-5*01 11.0 308.0 _CASSLAVGEGPQHF 113 2753 BZLF1-190-197 EBV 0.96 2156 BZLF1-190-197 83 2670 11 EBV BZLF1 RAKFKQLL effector T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-B*08:01 B2M MHCI -10976 chip0423_117382 -2.3 9.9 Chip2 T1D_5 T1D TGTGCCTTCGGGGGAGGAGGCTTCAAAACTATCTTT CAFGGGGFKTIF TRAV12-2*01 TRAJ9*01 54.0 5309.0 TGTGCCAGCACGCCCTCCGCCAGGGGAGGGGAGACCCAGTACTTC CASTPSARGGETQYF TRBV3-1*01 TRBJ2-5*01 19.0 1041.0 CAFGGGGFKTIF_CASTPSARGGETQYF 1 5643 ZNT8-YAY-8 ZNT8 0.88 54 ZNT8-YAY-8 67 5576 3 HomoSapiens ZNT8 YAYAKWKL Naive T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-B*08:01 B2M MHCI -10977 chip0423_606503 9.46 13.91 Chip2 T1D_6 T1D _ 6746 2161 M1 FLU 1.0 1250 NEG 77 2084 11 InfluenzaA M1 GILGFVFTL effector T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*02:01 B2M MHCI -10978 chip0423_367474 14.65 8.37 Chip2 T1D_6 T1D TGCGCCAGCAGTCTCCATCCCTGGGGCTGCCTACAATGAGCAGTTCTTC CASSLHPW??gAAYNEQFF TRBV4-3*01 TRBJ2-1*01 16.0 1056.0 _CASSLHPW??gAAYNEQFF 16 3430 EBNA3A-193-201 EBV 0.5 1022 NEG 86 3344 12 EBV EBNA3A FLRGRAYGL effector T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-B*08:01 B2M MHCI -10979 chip0423_251569 6.57 11.81 Chip2 healthy_3 healthy TGCGCCAGCAGCCAAGATGGGTACGGGGGGGATCAGCCCCAGCATTTT CASSQDGYGGDQPQHF TRBV4-1*01 TRBJ1-5*01 57.0 1037.0 _CASSQDGYGGDQPQHF 4 5573 NP44-52 FLU 0.76 474 NP44-52 72 5501 7 InfluenzaA NP CTELKLSDY transitional T cells between effector and memory populations PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*01:01 B2M MHCI -10980 chip0423_101813 12.93 10.22 Chip2 healthy_4 healthy TGTGCCAGCAGCACGACCCGCGCAGGGACTTGGCCCCTCCACTTT CASSTTRAGTWPLHF TRBV7-9*01 TRBJ1-6*01 4.0 136.0 _CASSTTRAGTWPLHF 18 3654 BZLF1-190-197 EBV 1.0 2156 NEG 86 3568 9 EBV BZLF1 RAKFKQLL effector memory T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-B*08:01 B2M MHCI -10981 chip0423_669596 8.61 11.8 Chip2 healthy_4 healthy _ 6746 3837 BZLF1-190-197 EBV 1.0 2156 NEG 94 3743 7 EBV BZLF1 RAKFKQLL transitional T cells between effector and memory populations PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-B*08:01 B2M MHCI -10982 chip0423_464785 6.88 12.15 Chip2 healthy_3 healthy TGCGCTGTGAGTTCCCGAATGCTCACCTTT CAVSSRMLTF TRAV1-1*01 TRAJ39*01 2.0 106.0 TGTGCCAGCACGGGGACTAGCGATAGCACAGATACGCAGTATTTT CASTGTSDSTDTQYF TRBV2*01 TRBJ2-3*01 48.0 1760.0 CAVSSRMLTF_CASTGTSDSTDTQYF 1 5580 NP44-52 FLU 0.94 474 NP44-52 87 5493 7 InfluenzaA NP CTELKLSDY transitional T cells between effector and memory populations PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*01:01 B2M MHCI -10983 chip0423_22242 7.98 13.36 Chip2 T1D_6 T1D TGTGCCTCCCAAGGAGGAAGCCAGGGAAATCTCATCTTT CASQGGSQGNLIF TRAV20*01 TRAJ42*01 7.0 312.0 TGTGCCAGCAGTATTGGACAGGGACTCACCATATTTTTT CASSIGQGLTIFF TRBV27*01 TRBJ1-3*01 4.0 135.0 CASQGGSQGNLIF_CASSIGQGLTIFF 1 2184 ROTA-VP6 ROTA 0.4 47 NEG 76 2108 7 RotavirusA VP6 TLLANVTAV transitional T cells between effector and memory populations PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*02:01 B2M MHCI -10984 chip0423_332984 10.7 11.2 Chip2 healthy_3 healthy TGTGCCACCCCGTGCGGCGCACGAAAAACTGTTTTTT CATPCG??gHEKLFF TRBV19*01 TRBJ1-4*01 17.0 1034.0 _CATPCG??gHEKLFF 1 4307 EBV-BRLF1 EBV 0.76 1264 EBV-BRLF1 67 4240 9 EBV BRLF1 YVLDHLIVV effector memory T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*02:01 B2M MHCI -10985 chip0423_16547 11.6 8.38 Chip2 T1D_5 T1D CGTGCCAGCAGCCGTCTTGGGGAACCCACCGGGGAGCTGTTTTTT RASSRLGEPTGELFF TRBV7-2*01 TRBJ2-2*01 13.0 655.0 _RASSRLGEPTGELFF 1 3015 BZLF1-190-197 EBV 0.67 2156 NEG 77 2938 10 EBV BZLF1 RAKFKQLL effector memory T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-B*08:01 B2M MHCI -10986 chip0423_188731 9.82 9.75 Chip2 healthy_4 healthy _ 6746 4556 BZLF1-190-197 EBV 0.78 2156 NEG 62 4494 9 EBV BZLF1 RAKFKQLL effector memory T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-B*08:01 B2M MHCI -10987 chip0423_740552 14.39 10.65 Chip2 healthy_4 healthy TGTGCAATGAGAGACCCCAGGACTGGGGCAAACAACCTCTTCTTT CAMRDPRTGANNLFF TRAV14/DV4*01 TRAJ36*01 41.0 2019.0 TGCGCCAGCAGCCAAGCCCCGGGACAGCGCACCGGGGAGCTGTTTTTT CASSQAPGQRTGELFF TRBV4-1*01 TRBJ2-2*01 19.0 729.0 CAMRDPRTGANNLFF_CASSQAPGQRTGELFF 2 3555 BZLF1-190-197 EBV 1.0 2156 NEG 78 3477 12 EBV BZLF1 RAKFKQLL effector T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-B*08:01 B2M MHCI -10988 chip0423_514162 -2.44 7.25 Chip2 healthy_3 healthy _ 6746 6377 PGT-178 PGT 0.6 1480 NEG 82 6295 3 HomoSapiens PGT LLAGIGTVPI Naive T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*02:01 B2M MHCI -10989 chip0423_202031 -2.1 16.02 Chip2 T1D_6 T1D TGCATCCTGAGAGACTGGGCTGGTGGTACTAGCTATGGAAAGCTGACATTT CILRDWAGGTSYGKLTF TRAV26-2*01 TRAJ52*01 40.0 916.0 CILRDWAGGTSYGKLTF_ 1 1669 ZNT8-153-161 ZNT8 0.75 41 NEG 74 1595 1 HomoSapiens ZNT8 VVTGVLVYL Naive T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*02:01 B2M MHCI -10990 chip0423_330521 -4.41 10.14 Chip2 healthy_3 healthy _ 6746 6024 NP44-52 FLU 0.71 474 NEG 72 5952 2 InfluenzaA NP CTELKLSDY Naive T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*01:01 B2M MHCI -10991 chip0423_328091 -3.42 12.3 Chip2 T1D_4 T1D TGTGCCAGCAGCTTATGGGGTTCAGTCTCGGGGGCTGAAGCTTTCTTT CASSLWGSVSGAEAFF TRBV7-8*01 TRBJ1-1*01 14.0 538.0 _CASSLWGSVSGAEAFF 1 4465 PGT-178 PGT 0.76 1480 PGT-178 70 4395 1 HomoSapiens PGT LLAGIGTVPI Naive T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*02:01 B2M MHCI -10992 chip0423_202594 -2.25 10.61 Chip2 T1D_5 T1D TGTGCCAGCAGTTATAGCAATCAGCCCCAGCATTTT CASSYSNQPQHF TRBV6-2*01,TRBV6-3*01 TRBJ1-5*01 25.0 1063.0 _CASSYSNQPQHF 1 4685 INS-GSH-9 INS 0.42 19 NEG 81 4604 3 HomoSapiens INS GSHLVEALY Naive T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*01:01 B2M MHCI -10993 chip0423_118201 10.09 10.32 Chip2 healthy_3 healthy _ 6746 5157 EBV-BRLF1 EBV 0.62 1264 EBV-BRLF1 78 5079 9 EBV BRLF1 YVLDHLIVV effector memory T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*02:01 B2M MHCI -10994 chip0423_879125 7.97 11.79 Chip2 healthy_3 healthy TGTGTGGTGAACGGGGAAAATGCCAGACTCATGTTT CVVNGENARLMF TRAV12-1*01 TRAJ31*01 13.0 1233.0 TGTGCTCTGATTTTTTTCTGGTGGCTACAATAAGCTAATTTTT CALIFFW??tGYNKLIF TRAV19*01 TRAJ4*01 30.0 1151.0 0.58 TGTGCCAGCAGTGAAATGTGGGGAGCACCCCTCCACTTT CASSEMWGAPLHF TRBV2*01 TRBJ1-6*01 34.0 1898.0 CVVNGENARLMF_CASSEMWGAPLHF 12 4814 NP44-52 FLU 0.73 474 NP44-52 82 4732 7 InfluenzaA NP CTELKLSDY transitional T cells between effector and memory populations PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*01:01 B2M MHCI -10995 chip0423_596559 -4.38 8.49 Chip2 healthy_3 healthy _ 6746 5836 MART1-ALA MART1 0.44 269 NEG 76 5760 2 HomoSapiens MART1 ALAGIGILTV Naive T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*02:01 B2M MHCI -10996 chip0423_146289 -2.68 11.83 Chip2 T1D_6 T1D TGTGCCAGTTCCCAGGAGGAGACCCAGTACTTC CASSQEETQYF TRBV5-4*01 TRBJ2-5*01 21.0 1895.0 _CASSQEETQYF 1 5406 PGT-178 PGT 0.81 1480 NEG 67 5339 4 HomoSapiens PGT LLAGIGTVPI Naive T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*02:01 B2M MHCI -10997 chip0423_215236 7.3 12.98 Chip2 healthy_3 healthy TGTGCCGTGAACGGAGGAGGAAACAAACTCACCTTT CAVNGGGNKLTF TRAV12-2*01 TRAJ10*01 1.0 87.0 CAVNGGGNKLTF_ 1 3274 ZNT8-293-300 ZNT8 0.69 17 NEG 73 3201 7 HomoSapiens ZNT8 LAVDGVLSV transitional T cells between effector and memory populations PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*02:01 B2M MHCI -10998 chip0423_772162 8.8 11.35 Chip2 healthy_3 healthy _ 6746 5445 NP140-148 FLU 0.91 102 NP140-148 76 5369 7 InfluenzaA NP HSNLNDATY transitional T cells between effector and memory populations PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*01:01 B2M MHCI -10999 chip0423_693394 13.06 13.64 Chip2 T1D_4 T1D TGTGCCAGCAGCCACGTCAACAACCCGGGGGATGGCTACACCTTC CASSHVNNPGDGYTF TRBV14*01 TRBJ1-2*01 2.0 46.0 _CASSHVNNPGDGYTF 2 1926 EBNA3A-158-166 EBV 0.64 444 NEG 91 1835 11 EBV EBNA3A QAKWRLQTL effector T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-B*08:01 B2M MHCI -11000 chip0423_305285 5.6 9.09 Chip2 T1D_4 T1D _ 6746 6676 EBV-LMP1-1 EBV 0.56 237 EBV-LMP1-1 83 6593 6 EBV LMP1 YLLEMLWRL central memory T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*02:01 B2M MHCI -11001 chip0423_763728 -4.12 11.26 Chip2 healthy_3 healthy _ 6746 5762 NP44-52 FLU 0.68 474 NP44-52 79 5683 2 InfluenzaA NP CTELKLSDY Naive T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*01:01 B2M MHCI -11002 chip0423_587001 7.02 12.73 Chip2 healthy_3 healthy _ 6746 4200 PA-46-54 FLU 0.46 18 PA-46-54 65 4135 7 InfluenzaA PA FMYSDFHFI transitional T cells between effector and memory populations PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*02:01 B2M MHCI -11003 chip0423_406197 4.94 11.67 Chip2 healthy_4 healthy TGTGCTTTTACTGGCGGCTTCAAAACTATCTCT CAFTGGFKTIS TRAV17*01 TRAJ9*01 4.0 470.0 CAFTGGFKTIS_ 1 5721 M1 FLU 1.0 1250 NEG 80 5641 6 InfluenzaA M1 GILGFVFTL central memory T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*02:01 B2M MHCI -11004 chip0423_789329 13.48 8.2 Chip2 healthy_4 healthy TGTGCCAGCAGCGCAACAGGGGACTACTATGGCTACACCTTC CASSATGDYYGYTF TRBV3-1*01 TRBJ1-2*01 17.0 800.0 _CASSATGDYYGYTF 3 2176 EBV-BRLF1 EBV 0.82 1264 NEG 87 2089 10 EBV BRLF1 YVLDHLIVV effector memory T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*02:01 B2M MHCI -11005 chip0423_141884 11.18 12.33 Chip2 healthy_4 healthy _ 6746 2320 BZLF1-190-197 EBV 1.0 2156 NEG 67 2253 11 EBV BZLF1 RAKFKQLL effector T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-B*08:01 B2M MHCI -11006 chip0423_192053 10.3 9.08 Chip2 T1D_4 T1D TGTGCCAGCAGCCGGGTCAGGGACACAGATACGCAGTATTTT CASSRVRDTDTQYF TRBV7-9*01 TRBJ2-3*01 11.0 673.0 _CASSRVRDTDTQYF 1 4267 BZLF1-190-197 EBV 0.8 2156 BZLF1-190-197 81 4186 8 EBV BZLF1 RAKFKQLL effector memory T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-B*08:01 B2M MHCI -11007 chip0423_594753 6.7 12.37 Chip2 healthy_3 healthy TGTGCCAGTAGTATCCGCAGCACCGGGGAGCTGTTTTTT CASSIRSTGELFF TRBV19*01 TRBJ2-2*01 38.0 278.0 _CASSIRSTGELFF 2 8038 M1 FLU 0.61 1250 M1 68 7970 7 InfluenzaA M1 GILGFVFTL transitional T cells between effector and memory populations PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*02:01 B2M MHCI -11008 chip0423_106556 -4.34 10.01 Chip2 healthy_3 healthy TGCGCCAGCAGCCTTAACTCGGTGGCCGGGGAGCTGTTTTTT CASSLNSVAGELFF TRBV4-1*01 TRBJ2-2*01 1.0 56.0 _CASSLNSVAGELFF 1 5531 MART1-ALA MART1 0.47 269 NEG 74 5457 2 HomoSapiens MART1 ALAGIGILTV Naive T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*02:01 B2M MHCI -11009 chip0423_637619 -2.22 13.75 Chip2 healthy_3 healthy TGTGCCAGCAGCTCGGGACAGGACCCCTATGGCTACACCTTC CASSSGQDPYGYTF TRBV7-2*01 TRBJ1-2*01 22.0 712.0 _CASSSGQDPYGYTF 1 3912 ZNT8-VTD-9 ZNT8 1.0 65 ZNT8-VTD-9 64 3848 1 HomoSapiens ZNT8 VTDAAHLLI Naive T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*01:01 B2M MHCI -11010 chip0423_61118 -3.7 11.96 Chip2 T1D_6 T1D TGTGCCAGCAGCGTGAGGGAGGGAACCACAGATACGCAGTATTTT CASSVREGTTDTQYF TRBV9*01 TRBJ2-3*01 74.0 3086.0 _CASSVREGTTDTQYF 1 5098 LMP2A-CPL EBV 0.43 44 NEG 74 5024 1 EBV LMP2A CPLSKILL Naive T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-B*08:01 B2M MHCI -11011 chip0423_879058 -2.59 15.14 Chip2 healthy_3 healthy _ 6746 3037 ADH-79-88 ADH 0.67 15 NEG 60 2977 1 HomoSapiens ADH RQFGPDWIVA Naive T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*02:01 B2M MHCI -11012 chip0423_791315 -2.92 8.04 Chip2 healthy_3 healthy TGTGTGGTTAATACTCTGGGGCTGGGCGTTACCACCTCCCTTTC CVVNTLGc?tGRYHLPF TRAV10*01 TRAJ28*01 11.0 868.0 TGCAGCGTTGACGGGAGAGGAGCCGGGGAGCTGTTTTTT CSVDGRGAGELFF TRBV29-1*01 TRBJ2-2*01 40.0 2549.0 CVVNTLGc?tGRYHLPF_CSVDGRGAGELFF 1 5324 MART1-ALA MART1 0.45 269 NEG 89 5235 3 HomoSapiens MART1 ALAGIGILTV Naive T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*02:01 B2M MHCI -11013 chip0423_502555 6.81 12.42 Chip2 healthy_3 healthy TGTGCTCGTATCTTTGTCAGGTGGCTTGTGTTTGCTGATTTTT CARIFVR??tGLCLLIF TRAV19*01 TRAJ4*01 3.0 14.0 CARIFVR??tGLCLLIF_ 1 4701 NP44-52 FLU 0.81 474 NP44-52 70 4631 7 InfluenzaA NP CTELKLSDY transitional T cells between effector and memory populations PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*01:01 B2M MHCI -11014 chip0423_568962 11.45 12.47 Chip2 T1D_4 T1D TGTGCCAGCAGCCAAGTCAACAACCCGGGGGATGGCTACACCTTC CASSQVNNPGDGYTF TRBV14*01 TRBJ1-2*01 8.0 229.0 _CASSQVNNPGDGYTF 94 2023 EBNA3A-158-166 EBV 0.64 444 NEG 84 1939 11 EBV EBNA3A QAKWRLQTL effector T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-B*08:01 B2M MHCI -11015 chip0423_68591 13.12 13.72 Chip2 T1D_4 T1D TGTGCTGTCAATTCAGGAAACACACCTCTTGTCTTT CAVNSGNTPLVF TRAV1-2*01 TRAJ29*01 5.0 259.0 TGTGCCAGCAGCCAAGTCAACAACCCGGGGGATGGCTACACCTTC CASSQVNNPGDGYTF TRBV14*01 TRBJ1-2*01 5.0 68.0 CAVNSGNTPLVF_CASSQVNNPGDGYTF 31 1180 EBNA3A-158-166 EBV 0.57 444 NEG 78 1102 11 EBV EBNA3A QAKWRLQTL effector T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-B*08:01 B2M MHCI -11016 chip0423_213139 -3.37 9.08 Chip2 T1D_4 T1D TGTGCCAGCAGTGATTGGGTGGGGAGTGAGGACAGGGCGCGCTACACCTTC CASSDWVGSEDRARYTF TRBV2*01 TRBJ1-2*01 5.0 233.0 _CASSDWVGSEDRARYTF 1 8019 PREINS-6-14 INS 0.54 20 NEG 79 7940 2 HomoSapiens PREINS RLLPLLALL Naive T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*02:01 B2M MHCI -11017 chip0423_601904 7.87 8.15 Chip2 healthy_5 healthy TGCAGCGTTGCAGGGGTTGACTACGAGCAGTACTTC CSVAGVDYEQYF TRBV29-1*01 TRBJ2-7*01 44.0 3210.0 _CSVAGVDYEQYF 1 4328 PREINS-42-51 INS 0.51 1 PREINS-42-51 70 4258 8 HomoSapiens PREINS VCGERGFFYT effector memory T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*01:01 B2M MHCI -11018 chip0423_533293 6.7 12.13 Chip2 healthy_3 healthy TGTGCTCTGAGTGAGGGTAACACCGACAAGCTCATCTTT CALSEGNTDKLIF TRAV19*01 TRAJ34*01 4.0 280.0 TGTGCCAGTCGTGCGCCCCCTCGGACTTATTCGTACATGCGCAGTTCTTC CASRAPPRa?cLFVHAQFF TRBV19*01 TRBJ2-1*01 13.0 728.0 CALSEGNTDKLIF_CASRAPPRa?cLFVHAQFF 1 5510 NP44-52 FLU 0.48 474 NP44-52 68 5442 7 InfluenzaA NP CTELKLSDY transitional T cells between effector and memory populations PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*01:01 B2M MHCI -11019 chip0423_764035 7.58 12.14 Chip2 healthy_3 healthy TGCAGTGCCGATTCCTACCGGGACATTGATAACTATGGCTACACCTTC CSADSYRDIDNYGYTF TRBV20-1*01 TRBJ1-2*01 55.0 3282.0 _CSADSYRDIDNYGYTF 8 4837 NP44-52 FLU 0.77 474 NP44-52 61 4776 7 InfluenzaA NP CTELKLSDY transitional T cells between effector and memory populations PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*01:01 B2M MHCI -11020 chip0423_854067 10.96 12.09 Chip2 T1D_5 T1D TGTGCCAGCAGCTGGCTCGGGGATCGGTATAATTCACCCCTCCACTTT CASSWLGDRYNSPLHF TRBV7-9*01 TRBJ1-6*01 17.0 931.0 _CASSWLGDRYNSPLHF 44 2747 BZLF1-190-197 EBV 0.71 2156 NEG 88 2659 9 EBV BZLF1 RAKFKQLL effector memory T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-B*08:01 B2M MHCI -11021 chip0423_350766 10.42 7.22 Chip2 T1D_6 T1D TGTGCTACGGTGGGAGTTTCAGGATACAGCACCCTCACCTTT CATVGVSGYSTLTF TRAV17*01 TRAJ11*01 7.0 371.0 CATVGVSGYSTLTF_ 1 8771 EBV-LMP2-FLY EBV 0.88 355 NEG 77 8694 10 EBV LMP2 FLYALALLL effector memory T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*02:01 B2M MHCI -11022 chip0423_472279 12.49 12.86 Chip2 T1D_5 T1D TGTGCAGCAATGGAAACCTCCTACGACAAGGTGATATTT CAAMETSYDKVIF TRAV13-1*01 TRAJ50*01 3.0 121.0 TGTGCCACCAGAGACCACAGGGACGGGACCGGGGAGCTGTTTTTT CATRDHRDGTGELFF TRBV24-1*01 TRBJ2-2*01 48.0 1951.0 CAAMETSYDKVIF_CATRDHRDGTGELFF 4 1962 BZLF1-190-197 EBV 0.4 2156 NEG 73 1889 10 EBV BZLF1 RAKFKQLL effector memory T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-B*08:01 B2M MHCI -11023 chip0423_297506 -3.96 10.37 Chip2 healthy_3 healthy TGTGCTGCCCCGACAGGAGGAGGTGCTGACGGACTCACCTTT CAAPTGGGADGLTF TRAV21*01 TRAJ45*01 10.0 463.0 TGCGCCAGCAGCCAAGAACTAGCGGGGGCTCGTCGGGAGACCCAGTACTTC CASSQELAGARRETQYF TRBV4-3*01 TRBJ2-5*01 24.0 962.0 CAAPTGGGADGLTF_CASSQELAGARRETQYF 1 4410 ZNT8-165-173 ZNT8 0.42 11 NEG 74 4336 2 HomoSapiens ZNT8 RLLYPDYQI Naive T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*02:01 B2M MHCI -11024 chip0423_758595 7.21 12.04 Chip2 healthy_3 healthy TGTGCAGCAAGTGGATATAACACCGACAAGCTCATCTTT CAASGYNTDKLIF TRAV29/DV5*01 TRAJ34*01 23.0 1392.0 CAASGYNTDKLIF_ 2 4246 NP44-52 FLU 0.82 474 NP44-52 78 4168 7 InfluenzaA NP CTELKLSDY transitional T cells between effector and memory populations PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*01:01 B2M MHCI -11025 chip0423_469033 11.85 13.83 Chip2 T1D_5 T1D TGTGTGGTGAGAGCATGGATAGCAGCTGTCAGTTCCTCTGG CVVRAWat?SSCQFLW TRAV10*01 TRAJ33*01 34.0 1259.0 CVVRAWat?SSCQFLW_ 1 1166 BZLF1-190-197 EBV 0.5 2156 NEG 67 1099 11 EBV BZLF1 RAKFKQLL effector T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-B*08:01 B2M MHCI -11026 chip0423_816173 5.32 8.88 Chip2 T1D_4 T1D TGCGCCAGCAGCCAAGAAGTCACAGATACGCAGTATTTT CASSQEVTDTQYF TRBV4-3*01 TRBJ2-3*01 4.0 88.0 _CASSQEVTDTQYF 5 3744 EBV-LMP1-1 EBV 0.91 237 NEG 79 3665 6 EBV LMP1 YLLEMLWRL central memory T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*02:01 B2M MHCI -11027 chip0423_65595 -2.31 15.56 Chip2 healthy_3 healthy _ 6746 2220 PGT-178 PGT 0.8 1480 NEG 63 2157 1 HomoSapiens PGT LLAGIGTVPI Naive T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*02:01 B2M MHCI -11028 chip0423_92596 11.28 9.67 Chip2 T1D_4 T1D TGCATCGTCAGAGTCGTGTGTACGGCACTGCCAGTCAACTCACCTTT CIVRVVCac?GTASQLTF TRAV26-1*01 TRAJ44*01 37.0 2069.0 TGTGCCAGCAGCTTAGCGGTCGGAGAAGGGCCCCAGCATTTT CASSLAVGEGPQHF TRBV7-9*01 TRBJ1-5*01 54.0 2448.0 CIVRVVCac?GTASQLTF_CASSLAVGEGPQHF 2 4115 BZLF1-190-197 EBV 0.97 2156 BZLF1-190-197 79 4036 9 EBV BZLF1 RAKFKQLL effector memory T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-B*08:01 B2M MHCI -11029 chip0423_293225 10.85 13.26 Chip2 healthy_4 healthy TGTGCCAGCAGCCAGACATTTCCGAACACCGGGGAGCTGTTTTTT CASSQTFPNTGELFF TRBV3-1*01 TRBJ2-2*01 33.0 1233.0 _CASSQTFPNTGELFF 12 2696 BZLF1-190-197 EBV 1.0 2156 NEG 75 2621 11 EBV BZLF1 RAKFKQLL effector T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-B*08:01 B2M MHCI -11030 chip0423_629039 7.45 13.5 Chip2 healthy_4 healthy _ 6746 2960 M1 FLU 0.83 1250 NEG 71 2889 7 InfluenzaA M1 GILGFVFTL transitional T cells between effector and memory populations PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*02:01 B2M MHCI -11031 chip0423_410688 5.46 12.79 Chip2 healthy_3 healthy TGCAGTGCTGACGGCTACAGGGGGCCATATGGCTACACCTTC CSADGYRGPYGYTF TRBV20-1*01 TRBJ1-2*01 17.0 1706.0 _CSADGYRGPYGYTF 1 7020 NP44-52 FLU 0.54 474 NEG 84 6936 7 InfluenzaA NP CTELKLSDY transitional T cells between effector and memory populations PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*01:01 B2M MHCI -11032 chip0423_62386 -2.64 7.74 Chip2 healthy_3 healthy TGCGCTGTGCGGACAAGCTCATCTTT CAVRa?cKLIF TRAV1-1*01 TRAJ32*01 1.0 260.0 TGTGCCAGCAGTTTCATGGGGGGAGGCTACGAGCAGTACTTC CASSFMGGGYEQYF TRBV28*01 TRBJ2-7*01 11.0 505.0 CAVRa?cKLIF_CASSFMGGGYEQYF 1 9383 G6PC2-LTS-10 IGRP 0.78 59 G6PC2-LTS-10 73 9310 2 HomoSapiens G6PC2 LTSLTILQLY Naive T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*01:01 B2M MHCI -11033 chip0423_522260 -3.15 12.19 Chip2 T1D_6 T1D _ 6746 4268 EBNA3A-158-166 EBV 0.88 444 NEG 84 4184 1 EBV EBNA3A QAKWRLQTL Naive T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-B*08:01 B2M MHCI -11034 chip0423_493371 10.66 7.39 Chip2 T1D_5 T1D _ 6746 5729 BZLF1-190-197 EBV 0.69 2156 BZLF1-190-197 83 5646 10 EBV BZLF1 RAKFKQLL effector memory T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-B*08:01 B2M MHCI -11035 chip0423_404647 16.09 11.69 Chip2 healthy_3 healthy TGTGCTCTGAGTTCTTATTCTGGGGGTTACCAGAAAGTTACCTTT CALSSYSGGYQKVTF TRAV19*01 TRAJ13*01 19.0 892.0 CALSSYSGGYQKVTF_ 4 2274 NP44-52 FLU 0.68 474 NP44-52 90 2184 12 InfluenzaA NP CTELKLSDY effector T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*01:01 B2M MHCI -11036 chip0423_37754 -4.2 11.22 Chip2 T1D_6 T1D _ 6746 5952 ZNT8-YAY-8 ZNT8 0.86 54 ZNT8-YAY-8 81 5871 1 HomoSapiens ZNT8 YAYAKWKL Naive T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-B*08:01 B2M MHCI -11037 chip0423_658676 11.39 8.45 Chip2 healthy_4 healthy TGTGCTGTAGAGAAAGAAGAACACCGACAAGCTCATCTTT CAVEKEga??acTDKLIF TRAV21*01 TRAJ34*01 45.0 2002.0 TGTGCCAGCAGCTTAAACGTCGGGGAGGGCGCAGGAAACACCATATATTTT CASSLNVGEGAGNTIYF TRBV7-6*01 TRBJ1-3*01 31.0 1306.0 CAVEKEga??acTDKLIF_CASSLNVGEGAGNTIYF 1 4681 BZLF1-190-197 EBV 0.86 2156 NEG 77 4604 10 EBV BZLF1 RAKFKQLL effector memory T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-B*08:01 B2M MHCI -11038 chip0423_399375 -2.18 8.84 Chip2 healthy_3 healthy TGTGCAGAGACTGCGCCTGGGAGTTTCCAACTCACTTTC CAETAPGSFQLTF TRAV5*01 TRAJ28*01 2.0 149.0 CAETAPGSFQLTF_ 1 5787 GAD65-114-122 GAD65 0.81 63 NEG 84 5703 4 HomoSapiens GAD65 VMNILLQYV Naive T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*02:01 B2M MHCI -11039 chip0423_318234 7.42 12.35 Chip2 healthy_3 healthy TGCAGTGCCGATTCCTACCGGGACATTGATAACTATGGGCTACACCTT CSADSYRDIDNYGLHL TRBV20-1*01 TRBJ1-2*01 11.0 471.0 _CSADSYRDIDNYGLHL 1 5401 NP44-52 FLU 0.82 474 NP44-52 74 5327 7 InfluenzaA NP CTELKLSDY transitional T cells between effector and memory populations PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*01:01 B2M MHCI -11040 chip0423_603152 9.58 10.81 Chip2 healthy_4 healthy TGTGCAATGAGAGACCCCAGGACTGGGGCAAACAACCTCTTCTTT CAMRDPRTGANNLFF TRAV14/DV4*01 TRAJ36*01 52.0 1752.0 TGCGCCGGCCGTCTCCATCCATGGAGCTGCCTACAATGAGCAGTTCTTC CAGRLHPW??aAAYNEQFF TRBV4-3*01 TRBJ2-1*01 6.0 503.0 CAMRDPRTGANNLFF_CAGRLHPW??aAAYNEQFF 1 4216 BZLF1-190-197 EBV 0.86 2156 NEG 77 4139 9 EBV BZLF1 RAKFKQLL effector memory T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-B*08:01 B2M MHCI -11041 chip0423_68705 6.74 12.5 Chip2 healthy_3 healthy TGTGCCAGCAGACCCACAGGGGGCGCAGATACGCAGTATTTT CASRPTGGADTQYF TRBV2*01 TRBJ2-3*01 18.0 932.0 _CASRPTGGADTQYF 1 4821 GAG-77-86 HIV 0.62 15 NEG 67 4754 7 HIV-1 GAG SLYNTVATLY transitional T cells between effector and memory populations PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*02:01 B2M MHCI -11042 chip0423_822403 10.64 7.41 Chip2 healthy_4 healthy TGTGCTGTGGAGGATCAAGGGAGATCTTATAACACCGACAAGCTCATCTTT CAVEDQGRSYNTDKLIF TRAV2*01 TRAJ34*01 73.0 1728.0 CAVEDQGRSYNTDKLIF_ 15 5746 BZLF1-190-197 EBV 0.68 2156 NEG 88 5658 10 EBV BZLF1 RAKFKQLL effector memory T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-B*08:01 B2M MHCI -11043 chip0423_313824 10.8 9.29 Chip2 healthy_5 healthy TGTGCCAGCAGTTTCAGCGGGAGCTCGGCCGGGGAGCTGTTTTTT CASSFSGSSAGELFF TRBV12-3*01,TRBV12-4*01 TRBJ2-2*01 8.0 337.0 _CASSFSGSSAGELFF 1 2846 BZLF1-190-197 EBV 0.67 2156 NEG 57 2789 9 EBV BZLF1 RAKFKQLL effector memory T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-B*08:01 B2M MHCI -11044 chip0423_323243 -2.45 7.67 Chip2 healthy_5 healthy TGTGCAATGAGAGCCTTTTACCCTGGGGCTGGGAGTTACCAACTCACTTTC CAMRAFYPGAGSYQLTF TRAV14/DV4*01 TRAJ28*01 52.0 1964.0 CAMRAFYPGAGSYQLTF_ 1 6932 INS-MAL-8 INS 0.43 38 NEG 64 6868 2 HomoSapiens INS MALWMRLL Naive T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-B*08:01 B2M MHCI -11045 chip0423_741322 6.33 12.56 Chip2 healthy_3 healthy TGTGCTCCAGTACCGGGTTAATAGGAAACTGACATTT CAPVPG??tNRKLTF TRAV41*01 TRAJ56*01 1.0 14.0 TGCGCCAGCAGCCAAGATGGGTACGGGGGGGATCAGCCCCAGCATTTT CASSQDGYGGDQPQHF TRBV4-1*01 TRBJ1-5*01 8.0 267.0 CAPVPG??tNRKLTF_CASSQDGYGGDQPQHF 2 6042 NP44-52 FLU 0.8 474 NP44-52 81 5961 7 InfluenzaA NP CTELKLSDY transitional T cells between effector and memory populations PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*01:01 B2M MHCI -11046 chip0423_769771 -4.59 10.41 Chip2 healthy_3 healthy TGTGCAGCAGATCTTTATAACCCCGCCCCGCTCCTCTTT CAADLYNPAPLLF TRAV29/DV5*01 TRAJ34*01 11.0 554.0 TGTGCCAGCAGCCAACAGGGGGTCAGAGAGCAGTTCTTC CASSQQGVREQFF TRBV3-1*01 TRBJ2-1*01 18.0 1438.0 CAADLYNPAPLLF_CASSQQGVREQFF 1 6237 PREINS-15-24 INS 0.4 3 NEG 71 6166 2 HomoSapiens PREINS ALWGPDPAAA Naive T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*02:01 B2M MHCI -11047 chip0423_247694 7.67 13.11 Chip2 healthy_3 healthy TGCGCTGATTACAGCAGTGCTTCCAAGATAATCTTT CADYSSASKIIF TRAV1-1*01 TRAJ3*01 13.0 1117.0 TGCGCCAGCAGCCAAAATGGACTAGCGGCAACTAGCACAGATACGCAGTATTTT CASSQNGLAATSTDTQYF TRBV4-1*01 TRBJ2-3*01 43.0 1310.0 CADYSSASKIIF_CASSQNGLAATSTDTQYF 1 3805 NP44-52 FLU 0.64 474 NEG 69 3736 7 InfluenzaA NP CTELKLSDY transitional T cells between effector and memory populations PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*01:01 B2M MHCI -11048 chip0423_537848 15.65 9.97 Chip2 healthy_5 healthy TGTGCCAGCAGTCAACAAGGGCGGAATGAAAAACTGTTTTTT CASSQQGRNEKLFF TRBV28*01 TRBJ1-4*01 31.0 591.0 _CASSQQGRNEKLFF 1 2050 BZLF1-190-197 EBV 0.89 2156 BZLF1-190-197 75 1975 12 EBV BZLF1 RAKFKQLL effector T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-B*08:01 B2M MHCI -11049 chip0423_629862 8.41 13.82 Chip2 healthy_3 healthy TGTGTGGTGAACGGGGAAAATGCCAGACTCATGTTT CVVNGENARLMF TRAV12-1*01 TRAJ31*01 19.0 1608.0 CVVNGENARLMF_ 5 2850 NP44-52 FLU 0.95 474 NP44-52 69 2781 11 InfluenzaA NP CTELKLSDY effector T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*01:01 B2M MHCI -11050 chip0423_87529 5.98 10.08 Chip2 healthy_3 healthy _ 6746 5018 EBV-LMP2-FLY EBV 0.79 355 NEG 70 4948 6 EBV LMP2 FLYALALLL central memory T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*02:01 B2M MHCI -11051 chip0423_526367 -1.22 10.37 Chip2 healthy_3 healthy TGTGCCAGCACACCGGGACAGGGATTTGGGTACTTC CASTPGQGFGYF TRBV28*01 TRBJ2-7*01 20.0 1429.0 _CASTPGQGFGYF 1 4895 PGT-178 PGT 0.5 1480 NEG 71 4824 7 HomoSapiens PGT LLAGIGTVPI transitional T cells between effector and memory populations PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*02:01 B2M MHCI -11052 chip0423_359901 11.25 11.82 Chip2 healthy_3 healthy _ 6746 3167 EBV-BRLF1 EBV 0.5 1264 NEG 72 3095 9 EBV BRLF1 YVLDHLIVV effector memory T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*02:01 B2M MHCI -11053 chip0423_805267 6.44 13.86 Chip2 healthy_3 healthy TGTGCTGTGAGTGATCGGAACTTCAACAAATTTTACTTT CAVSDRNFNKFYF TRAV8-4*01 TRAJ21*01 1.0 23.0 CAVSDRNFNKFYF_ 2 4613 NP44-52 FLU 0.74 474 NP44-52 79 4534 7 InfluenzaA NP CTELKLSDY transitional T cells between effector and memory populations PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*01:01 B2M MHCI -11054 chip0423_460386 12.39 7.43 Chip2 healthy_4 healthy _ 6746 3973 BZLF1-190-197 EBV 0.59 2156 NEG 86 3887 10 EBV BZLF1 RAKFKQLL effector memory T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-B*08:01 B2M MHCI -11055 chip0423_31667 9.9 8.74 Chip2 healthy_4 healthy _ 6746 5477 EBNA3A-193-201 EBV 1.0 1022 NEG 72 5405 8 EBV EBNA3A FLRGRAYGL effector memory T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-B*08:01 B2M MHCI -11056 chip0423_589929 6.59 12.44 Chip2 healthy_3 healthy TGTGCTCCAGTACCGGGTTAATAGGAAACTGACATTT CAPVPG??tNRKLTF TRAV41*01 TRAJ56*01 1.0 13.0 CAPVPG??tNRKLTF_ 1 5615 NP44-52 FLU 0.78 474 NP44-52 67 5548 7 InfluenzaA NP CTELKLSDY transitional T cells between effector and memory populations PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*01:01 B2M MHCI -11057 chip0423_571066 6.55 12.39 Chip2 healthy_3 healthy TGTGCTGTGGGTTCTCCTAATTATGGAGGAAGCCAAGGAAATCTCATCTTT CAVGSPNYGGSQGNLIF TRAV21*01 TRAJ42*01 46.0 1002.0 TGTGCCAGCAGCTTGGAGCCGCATGGCTACACCTTC CASSLEPHGYTF TRBV5-4*01 TRBJ1-2*01 12.0 963.0 CAVGSPNYGGSQGNLIF_CASSLEPHGYTF 2 4109 NP44-52 FLU 0.82 474 NP44-52 71 4038 7 InfluenzaA NP CTELKLSDY transitional T cells between effector and memory populations PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*01:01 B2M MHCI -11058 chip0423_417989 7.19 13.42 Chip2 healthy_3 healthy TGTGCCAGCAGTGAAATGTGGGGAGCACCCCTCCACTTT CASSEMWGAPLHF TRBV2*01 TRBJ1-6*01 2.0 112.0 _CASSEMWGAPLHF 14 3752 NP44-52 FLU 0.93 474 NP44-52 78 3674 7 InfluenzaA NP CTELKLSDY transitional T cells between effector and memory populations PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*01:01 B2M MHCI -11059 chip0423_416264 12.14 13.66 Chip2 T1D_5 T1D TGTGCCAGCAGTCCCGACGGATCCACCGGGGAGCTGTTTTTT CASSPDGSTGELFF TRBV12-3*01,TRBV12-4*01 TRBJ2-2*01 24.0 1400.0 _CASSPDGSTGELFF 10 1250 BZLF1-190-197 EBV 1.0 2156 NEG 83 1167 11 EBV BZLF1 RAKFKQLL effector T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-B*08:01 B2M MHCI -11060 chip0423_319676 10.59 13.72 Chip2 T1D_4 T1D TGCATCCTGCCTCTTGCTGGTGGTACTAGCTATGGAAAGCTGACATTT CILPLAGGTSYGKLTF TRAV26-2*01 TRAJ52*01 1.0 37.0 TGTGCCAGCAGCTTAGGGCAAGCCTACGAGCAGTACTTC CASSLGQAYEQYF TRBV7-8*01 TRBJ2-7*01 16.0 427.0 CILPLAGGTSYGKLTF_CASSLGQAYEQYF 308 2935 EBNA3A-193-201 EBV 0.64 1022 NEG 81 2854 11 EBV EBNA3A FLRGRAYGL effector T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-B*08:01 B2M MHCI -11061 chip0423_44088 6.94 14.43 Chip2 healthy_3 healthy TGTGTGGTGAACGGGGAAAATGCCAGACTCATGTTT CVVNGENARLMF TRAV12-1*01 TRAJ31*01 1.0 16.0 CVVNGENARLMF_ 5 3703 NP44-52 FLU 0.84 474 NP44-52 71 3632 7 InfluenzaA NP CTELKLSDY transitional T cells between effector and memory populations PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*01:01 B2M MHCI -11062 chip0423_173511 -3.94 13.34 Chip2 T1D_6 T1D TGTGTTTCTGGTTCTGCAAGGCAACTGACCTTT CVSGSARQLTF TRAV12-1*01 TRAJ22*01 1.0 298.0 TGTGCCTGGCGTTGGGGTGGCACCGGGGAGCTGTTTTTT CAWRWGGTGELFF TRBV30*01 TRBJ2-2*01 20.0 1003.0 CVSGSARQLTF_CAWRWGGTGELFF 1 3684 ZNT8-YAY-8 ZNT8 0.5 54 NEG 74 3610 1 HomoSapiens ZNT8 YAYAKWKL Naive T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-B*08:01 B2M MHCI -11063 chip0423_573224 -3.56 12.17 Chip2 healthy_5 healthy _ 6746 3813 PB1-590-599 FLU 0.45 37 NEG 79 3734 1 InfluenzaA PB1 LVSDGGPNLY Naive T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*01:01 B2M MHCI -11064 chip0423_592636 14.33 9.76 Chip2 healthy_4 healthy TGGGCTATGAGCCGACCTAACTTTGGAAATGAGAAATTAACCTCT WAMSRPNFGNEKLTS TRAV12-3*01 TRAJ48*01 40.0 1777.0 TGTGCCAGCAGCCAATTTACCTCAGTCGGGGAGGTGCCTGAAGCTTTCTTT CASSQFTSVGEVPEAFF TRBV14*01 TRBJ1-1*01 8.0 149.0 WAMSRPNFGNEKLTS_CASSQFTSVGEVPEAFF 1 3840 PGT-178 PGT 0.83 1480 NEG 86 3754 12 HomoSapiens PGT LLAGIGTVPI effector T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*02:01 B2M MHCI -11065 chip0423_272706 12.09 7.51 Chip2 T1D_4 T1D TGTGCCAGCAGAGGACAGCTGGGCGGCAATCAGCCCCAGCATTTT CASRGQLGGNQPQHF TRBV28*01 TRBJ1-5*01 14.0 563.0 _CASRGQLGGNQPQHF 2 3763 EBV-BRLF1 EBV 0.64 1264 NEG 85 3678 10 EBV BRLF1 YVLDHLIVV effector memory T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*02:01 B2M MHCI -11066 chip0423_53407 12.35 10.34 Chip2 T1D_4 T1D TGTGCCAGCAGCTTAGCGGTCGGAGAAGGGCCCCAGCATTTT CASSLAVGEGPQHF TRBV7-9*01 TRBJ1-5*01 19.0 645.0 _CASSLAVGEGPQHF 113 4656 BZLF1-190-197 EBV 0.83 2156 BZLF1-190-197 89 4567 9 EBV BZLF1 RAKFKQLL effector memory T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-B*08:01 B2M MHCI -11067 chip0423_846903 7.29 12.81 Chip2 healthy_4 healthy TGTGCCAGCAGCTTAATTGTTAGCGGGGGGGCAAATGAGCAGTTCTTC CASSLIVSGGANEQFF TRBV7-4*01 TRBJ2-1*01 25.0 898.0 _CASSLIVSGGANEQFF 5 2514 BZLF1-190-197 EBV 0.83 2156 NEG 75 2439 7 EBV BZLF1 RAKFKQLL transitional T cells between effector and memory populations PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-B*08:01 B2M MHCI -11068 chip0423_491348 12.71 8.69 Chip2 healthy_4 healthy TGTGCTGTGGAGGATCAAGGGAGATCTTATAACACCGACAAGCTCCTCTTT CAVEDQGRSYNTDKLLF TRAV2*01 TRAJ34*01 20.0 443.0 CAVEDQGRSYNTDKLLF_ 2 1997 BZLF1-190-197 EBV 1.0 2156 NEG 83 1914 10 EBV BZLF1 RAKFKQLL effector memory T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-B*08:01 B2M MHCI -11069 chip0423_816146 -2.9 8.87 Chip2 T1D_6 T1D TGTGCTACGGACTCTGGGCACAACAGACTCGCTTTT CATDSGHNRLAF TRAV17*01 TRAJ7*01 6.0 385.0 TGTGCCAGCATGCACAGGGGCTACAATGAGCAGTTCTTC CASMHRGYNEQFF TRBV25-1*01 TRBJ2-1*01 11.0 995.0 CATDSGHNRLAF_CASMHRGYNEQFF 1 5403 NP413-421 FLU 0.59 16 NP413-421 65 5338 2 InfluenzaA NP ALKCKGFHV Naive T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-B*08:01 B2M MHCI -11070 chip0423_638398 6.95 12.75 Chip2 healthy_3 healthy _ 6746 3713 NP44-52 FLU 0.76 474 NP44-52 66 3647 7 InfluenzaA NP CTELKLSDY transitional T cells between effector and memory populations PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*01:01 B2M MHCI -11071 chip0423_413649 14.89 11.91 Chip2 healthy_4 healthy _ 6746 2669 BZLF1-190-197 EBV 0.88 2156 NEG 75 2594 12 EBV BZLF1 RAKFKQLL effector T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-B*08:01 B2M MHCI -11072 chip0423_404375 -2.14 15.89 Chip2 T1D_6 T1D TGTGCCAGTAGTTCGTTGACAGCGAGTGAGCAGCTCTTC CASSSLTASEQLF TRBV19*01 TRBJ2-1*01 9.0 732.0 _CASSSLTASEQLF 1 1391 PGT-178 PGT 0.91 1480 NEG 73 1318 1 HomoSapiens PGT LLAGIGTVPI Naive T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*02:01 B2M MHCI -11073 chip0423_530928 11.15 8.63 Chip2 healthy_4 healthy TGTGCTGTGGAGGATCAAGGGAGATCTTATAACACCGACAAGCTCATCTTT CAVEDQGRSYNTDKLIF TRAV2*01 TRAJ34*01 68.0 1399.0 CAVEDQGRSYNTDKLIF_ 15 3935 BZLF1-190-197 EBV 1.0 2156 NEG 59 3876 10 EBV BZLF1 RAKFKQLL effector memory T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-B*08:01 B2M MHCI -11074 chip0423_591181 -0.13 3.98 Chip2 T1D_6 T1D TGTGCCGTGAACTTGG CAgt??gaTW TRAV12-2*01 TRAJ38*01 3.0 786.0 CAgt??gaTW_ 1 4766 PGT-178 PGT 0.59 1480 PGT-178 67 4699 5 HomoSapiens PGT LLAGIGTVPI natural killer-like T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*02:01 B2M MHCI -11075 chip0423_260024 8.06 13.11 Chip2 healthy_3 healthy TGTGCCAGCACGGGGACTAGCGATAGCACAGATACGCAGTATTTT CASTGTSDSTDTQYF TRBV2*01 TRBJ2-3*01 45.0 2826.0 _CASTGTSDSTDTQYF 9 3065 NP44-52 FLU 0.78 474 NP44-52 71 2994 7 InfluenzaA NP CTELKLSDY transitional T cells between effector and memory populations PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*01:01 B2M MHCI -11076 chip0423_706362 11.23 14.03 Chip2 T1D_6 T1D _ 6746 1339 EBNA3A-158-166 EBV 0.57 444 NEG 64 1275 11 EBV EBNA3A QAKWRLQTL effector T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-B*08:01 B2M MHCI -11077 chip0423_222255 10.22 11.0 Chip2 healthy_5 healthy _ 6746 3789 BZLF1-190-197 EBV 0.81 2156 NEG 66 3723 9 EBV BZLF1 RAKFKQLL effector memory T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-B*08:01 B2M MHCI -11078 chip0423_176213 -2.62 8.88 Chip2 healthy_3 healthy TGTGCCAGCAGCTCCCAGTCTGAGCAGTTCTTC CASSSQSEQFF TRBV13*01 TRBJ2-1*01 10.0 932.0 _CASSSQSEQFF 1 8035 NP140-148 FLU 0.44 102 NEG 82 7953 2 InfluenzaA NP HSNLNDATY Naive T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*01:01 B2M MHCI -11079 chip0423_219647 10.82 9.96 Chip2 healthy_4 healthy _ 6746 3699 EBNA3A-193-201 EBV 0.57 1022 NEG 67 3632 9 EBV EBNA3A FLRGRAYGL effector memory T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-B*08:01 B2M MHCI -11080 chip0423_473010 5.84 12.07 Chip2 T1D_4 T1D TGTGCCAGTAGTGCTGGATCCATGGGCAACTACGAGCAGTACTTC CASSAGSMGNYEQYF TRBV19*01 TRBJ2-7*01 24.0 1389.0 _CASSAGSMGNYEQYF 1 6010 MART1-A28L MART1 0.56 84 NEG 65 5945 7 HomoSapiens MART1 ALGIGILTV transitional T cells between effector and memory populations PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*02:01 B2M MHCI -11081 chip0423_715661 5.4 10.6 Chip2 healthy_3 healthy TGTGCCAGCAGCTACGGCGTCGAGCAGTCCTTC CASSYGVEQSF TRBV11-2*01 TRBJ2-1*01 9.0 821.0 _CASSYGVEQSF 1 4882 HCVNS4B-1807-1816 HCV 0.78 74 NEG 60 4822 6 HCV NS4B LLFNILGGWV central memory T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*02:01 B2M MHCI -11082 chip0423_636108 8.65 13.95 Chip2 healthy_3 healthy GGGGGTCAGAGTGAGACTACGGGAAGGCAGCATGCTCACCTTT GGQSETT??gEGSMLTF TRAV19*01 TRAJ39*01 12.0 1929.0 TGCGCCAGCAGCCAAGAGGGACAGGGTGCCGGGGAGCTGTTTTTT CASSQEGQGAGELFF TRBV4-1*01 TRBJ2-2*01 15.0 828.0 GGQSETT??gEGSMLTF_CASSQEGQGAGELFF 1 3100 NP44-52 FLU 0.82 474 NP44-52 74 3026 11 InfluenzaA NP CTELKLSDY effector T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*01:01 B2M MHCI -11083 chip0423_665871 6.61 12.25 Chip2 healthy_3 healthy _ 6746 5240 NP44-52 FLU 0.86 474 NP44-52 63 5177 7 InfluenzaA NP CTELKLSDY transitional T cells between effector and memory populations PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*01:01 B2M MHCI -11084 chip0423_689109 5.67 9.7 Chip2 T1D_4 T1D TGTGCCAGCAGTAGGGGGAACACTGAAGCTTTCTTT CASSRGNTEAFF TRBV2*01 TRBJ1-1*01 1.0 52.0 _CASSRGNTEAFF 2 6825 EBV-LMP2A EBV 0.82 700 EBV-LMP2A 67 6758 6 EBV LMP2A CLGGLLTMV central memory T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*02:01 B2M MHCI -11085 chip0423_330055 5.79 10.2 Chip2 T1D_5 T1D _ 6746 3976 BZLF1-190-197 EBV 0.7 2156 NEG 70 3906 6 EBV BZLF1 RAKFKQLL central memory T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-B*08:01 B2M MHCI -11086 chip0423_679499 -2.18 15.88 Chip2 healthy_3 healthy TGTGCTGTGGCGGGCTCTAGCGACACAGGCACACTAATCTTT CAVAGSSDTGTLIF TRAV8-4*01 TRAJ37*01 7.0 401.0 CAVAGSSDTGTLIF_ 1 1984 GAD65-159-167 GAD65 0.71 7 NEG 64 1920 1 HomoSapiens GAD65 ILMHCQTTL Naive T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*02:01 B2M MHCI -11087 chip0423_779369 0.69 5.57 Chip2 healthy_3 healthy TGTGCCAGCAGGGACAGCGGGAGTAATGAGCAGTTCTTC CASRDSGSNEQFF TRBV6-4*01 TRBJ2-1*01 10.0 808.0 _CASRDSGSNEQFF 1 7577 NP44-52 FLU 0.62 474 NEG 64 7513 5 InfluenzaA NP CTELKLSDY natural killer-like T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*01:01 B2M MHCI -11088 chip0423_394242 8.57 11.5 Chip2 T1D_4 T1D TGTGCCAGCAGCGCAGACAGCGATTATGGCTACACCTTC CASSADSDYGYTF TRBV9*01 TRBJ1-2*01 18.0 686.0 _CASSADSDYGYTF 5 4760 EBV-LMP1-1 EBV 1.0 237 NEG 73 4687 7 EBV LMP1 YLLEMLWRL transitional T cells between effector and memory populations PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*02:01 B2M MHCI -11089 chip0423_148947 10.14 9.09 Chip2 healthy_3 healthy _ 6746 4544 EBV-BRLF1 EBV 0.7 1264 EBV-BRLF1 60 4484 8 EBV BRLF1 YVLDHLIVV effector memory T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*02:01 B2M MHCI -11090 chip0423_87264 7.88 11.63 Chip2 T1D_4 T1D _ 6746 4283 EBV-BRLF1 EBV 0.74 1264 NEG 62 4221 7 EBV BRLF1 YVLDHLIVV transitional T cells between effector and memory populations PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*02:01 B2M MHCI -11091 chip0423_429800 -3.9 12.71 Chip2 T1D_4 T1D TGTGCCAGCAGTTTAGGGATGGGTCAGCCCCAGCATTTT CASSLGMGQPQHF TRBV28*01 TRBJ1-5*01 4.0 142.0 _CASSLGMGQPQHF 1 3945 PGT-178 PGT 0.46 1480 PGT-178 65 3880 1 HomoSapiens PGT LLAGIGTVPI Naive T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*02:01 B2M MHCI -11092 chip0423_344112 -1.89 8.18 Chip2 healthy_3 healthy _ 6746 7686 PGT-178 PGT 0.64 1480 NEG 61 7625 4 HomoSapiens PGT LLAGIGTVPI Naive T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*02:01 B2M MHCI -11093 chip0423_194470 -3.26 8.91 Chip2 healthy_3 healthy TGTGCAATGAGCCTCTCTAACTTTGGAAATGAGAAATTAACCTTT CAMSLSNFGNEKLTF TRAV12-3*01 TRAJ48*01 28.0 635.0 CAMSLSNFGNEKLTF_ 16 6988 PGT-178 PGT 0.77 1480 PGT-178 65 6923 2 HomoSapiens PGT LLAGIGTVPI Naive T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*02:01 B2M MHCI -11094 chip0423_845174 11.9 10.71 Chip2 T1D_4 T1D TGCAGTGCCGGGACAGGGGATTGGGGTGAGCAGTTCTTC CSAGTGDWGEQFF TRBV29-1*01 TRBJ2-1*01 54.0 4059.0 _CSAGTGDWGEQFF 1 3818 BZLF1-190-197 EBV 0.67 2156 NEG 72 3746 9 EBV BZLF1 RAKFKQLL effector memory T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-B*08:01 B2M MHCI -11095 chip0423_231338 -2.77 14.66 Chip2 healthy_3 healthy _ 6746 3316 GAD65-159-167 GAD65 1.0 7 NEG 57 3259 1 HomoSapiens GAD65 ILMHCQTTL Naive T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*02:01 B2M MHCI -11096 chip0423_828497 10.5 13.97 Chip2 T1D_6 T1D TGCGCCAGCAGCCAAGGGGCTAGCGGGAGCTTTGAAGAGACCCAGTACTTC CASSQGASGSFEETQYF TRBV4-1*01 TRBJ2-5*01 2.0 64.0 _CASSQGASGSFEETQYF 1 1222 M1 FLU 1.0 1250 NEG 64 1158 11 InfluenzaA M1 GILGFVFTL effector T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*02:01 B2M MHCI -11097 chip0423_381059 8.68 11.75 Chip2 T1D_5 T1D TGTGCCAGCAGCCCTCTTGGGAGCAATGAAAAACTGTTTTTT CASSPLGSNEKLFF TRBV7-9*01 TRBJ1-4*01 9.0 403.0 _CASSPLGSNEKLFF 20 3199 BZLF1-190-197 EBV 1.0 2156 NEG 70 3129 7 EBV BZLF1 RAKFKQLL transitional T cells between effector and memory populations PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-B*08:01 B2M MHCI -11098 chip0423_48606 6.82 13.71 Chip2 healthy_3 healthy _ 6746 4121 M1 FLU 0.62 1250 NEG 73 4048 7 InfluenzaA M1 GILGFVFTL transitional T cells between effector and memory populations PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*02:01 B2M MHCI -11099 chip0423_881597 -4.23 13.36 Chip2 healthy_3 healthy _ 6746 3423 PGT-178 PGT 0.54 1480 NEG 61 3362 1 HomoSapiens PGT LLAGIGTVPI Naive T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*02:01 B2M MHCI -11100 chip0423_27844 6.21 11.49 Chip2 healthy_3 healthy _ 6746 5076 NP44-52 FLU 0.8 474 NP44-52 55 5021 7 InfluenzaA NP CTELKLSDY transitional T cells between effector and memory populations PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*01:01 B2M MHCI -11101 chip0423_235167 7.71 12.82 Chip2 healthy_3 healthy _ 6746 4010 NP44-52 FLU 0.73 474 NEG 62 3948 7 InfluenzaA NP CTELKLSDY transitional T cells between effector and memory populations PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*01:01 B2M MHCI -11102 chip0423_444419 -2.26 9.45 Chip2 T1D_5 T1D TGTGCAATGAGAGGGGGTAATTCAGGGAGCCCAGAAGCTGGTATTT CAMRGGNtc??agGAQKLVF TRAV14/DV4*01 TRAJ54*01 2.0 26.0 TGTGCCAGCAGCCAACCCGGGGGCGCGGGATGGACCGGGGAGCTGTTTTTT CASSQPGGAGWTGELFF TRBV11-2*01 TRBJ2-2*01 34.0 1253.0 CAMRGGNtc??agGAQKLVF_CASSQPGGAGWTGELFF 1 5285 IAPP-ILK-8 IAPP 0.43 20 IAPP-ILK-8 64 5221 3 HomoSapiens IAPP ILKLQVFL Naive T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-B*08:01 B2M MHCI -11103 chip0423_135053 11.13 13.68 Chip2 healthy_3 healthy _ 6746 2151 NP44-52 FLU 0.87 474 NP44-52 72 2079 11 InfluenzaA NP CTELKLSDY effector T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*01:01 B2M MHCI -11104 chip0423_329739 11.45 10.13 Chip2 healthy_4 healthy _ 6746 3074 BZLF1-190-197 EBV 0.57 2156 NEG 82 2992 9 EBV BZLF1 RAKFKQLL effector memory T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-B*08:01 B2M MHCI -11105 chip0423_403202 10.92 9.97 Chip2 healthy_4 healthy _ 6746 3668 BZLF1-190-197 EBV 0.88 2156 NEG 73 3595 9 EBV BZLF1 RAKFKQLL effector memory T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-B*08:01 B2M MHCI -11106 chip0423_880295 15.46 9.87 Chip2 healthy_4 healthy _ 6746 2801 EBV-BRLF1 EBV 0.78 1264 NEG 90 2711 12 EBV BRLF1 YVLDHLIVV effector T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*02:01 B2M MHCI -11107 chip0423_748784 -3.31 12.6 Chip2 healthy_3 healthy _ 6746 3840 MART1-ALA MART1 0.6 269 NEG 62 3778 1 HomoSapiens MART1 ALAGIGILTV Naive T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*02:01 B2M MHCI -11108 chip0423_439153 11.04 11.75 Chip2 healthy_4 healthy TGTGCTCTGAGTGAGGAAAACAGCAGTGCTCCACGCTAATCTTT CALSEENa?gQCSTLIF TRAV19*01 TRAJ3*01 41.0 1985.0 CALSEENa?gQCSTLIF_ 1 2366 BZLF1-190-197 EBV 0.94 2156 BZLF1-190-197 79 2287 9 EBV BZLF1 RAKFKQLL effector memory T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-B*08:01 B2M MHCI -11109 chip0423_540937 -2.35 15.41 Chip2 T1D_6 T1D TGTGCAGCAAGCGCGTTTTTTCATGGACTGGGGCAAACAACCTTTTCTTT CAASAFFHg?gTGANNLFF TRAV29/DV5*01 TRAJ36*01 8.0 325.0 CAASAFFHg?gTGANNLFF_ 1 2903 MART1-ALA MART1 0.67 269 NEG 61 2842 1 HomoSapiens MART1 ALAGIGILTV Naive T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*02:01 B2M MHCI -11110 chip0423_51532 7.95 11.79 Chip2 healthy_3 healthy TGTGCAGGAGCCCAAGTGGATAGCAGCTATAAATTGATCTTC CAGAQVDSSYKLIF TRAV27*01 TRAJ12*01 13.0 721.0 TGTGCCAGCAGTGAAGTCCGGGACTGGGGGAACAATGAGCAGTTCTTC CASSEVRDWGNNEQFF TRBV27*01 TRBJ2-1*01 33.0 1675.0 CAGAQVDSSYKLIF_CASSEVRDWGNNEQFF 1 5059 EBV-LMP2A EBV 0.49 700 EBV-LMP2A 68 4991 7 EBV LMP2A CLGGLLTMV transitional T cells between effector and memory populations PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*02:01 B2M MHCI -11111 chip0423_737247 -2.66 14.34 Chip2 T1D_6 T1D TGTGCAGCAACATCAGGAACCTACAAATACATCTTT CAATSGTYKYIF TRAV29/DV5*01 TRAJ40*01 3.0 131.0 CAATSGTYKYIF_ 1 3596 MART1-ALA MART1 0.71 269 NEG 71 3525 1 HomoSapiens MART1 ALAGIGILTV Naive T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*02:01 B2M MHCI -11112 chip0423_741525 14.03 9.95 Chip2 healthy_4 healthy TGTGCAGCAACCCTATATGACAAGATCATCTTT CAATLYDKIIF TRAV29/DV5*01 TRAJ30*01 2.0 303.0 CAATLYDKIIF_ 2 2700 BZLF1-190-197 EBV 1.0 2156 NEG 84 2616 12 EBV BZLF1 RAKFKQLL effector T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-B*08:01 B2M MHCI -11113 chip0423_668554 9.27 11.66 Chip2 healthy_4 healthy _ 6746 3471 BZLF1-190-197 EBV 1.0 2156 NEG 67 3404 9 EBV BZLF1 RAKFKQLL effector memory T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-B*08:01 B2M MHCI -11114 chip0423_1543 8.53 12.36 Chip2 T1D_5 T1D TGTGCCAGCAGCTGGCTCGGGGATCGGTATAATTCACCCCTCCACTTT CASSWLGDRYNSPLHF TRBV7-9*01 TRBJ1-6*01 1.0 12.0 _CASSWLGDRYNSPLHF 44 3373 BZLF1-190-197 EBV 0.5 2156 NEG 68 3305 7 EBV BZLF1 RAKFKQLL transitional T cells between effector and memory populations PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-B*08:01 B2M MHCI -11115 chip0423_288725 11.15 8.02 Chip2 healthy_4 healthy _ 6746 4615 BZLF1-190-197 EBV 0.57 2156 NEG 86 4529 10 EBV BZLF1 RAKFKQLL effector memory T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-B*08:01 B2M MHCI -11116 chip0423_419643 6.17 9.67 Chip2 T1D_4 T1D TGTGCCAGCAGTTACTCAAGTACAGGGGAGTACTTC CASSYSSTGEYF TRBV6-2*01,TRBV6-3*01 TRBJ2-7*01 11.0 500.0 _CASSYSSTGEYF 32 7550 EBV-LMP1-1 EBV 0.83 237 NEG 64 7486 6 EBV LMP1 YLLEMLWRL central memory T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*02:01 B2M MHCI -11117 chip0423_376613 11.71 13.22 Chip2 healthy_4 healthy TGCAGCGTTGGCTCAGGGGAGGGCTACGAGCAGTACTTC CSVGSGEGYEQYF TRBV29-1*01 TRBJ2-7*01 14.0 883.0 _CSVGSGEGYEQYF 5 2834 BZLF1-190-197 EBV 1.0 2156 NEG 71 2763 11 EBV BZLF1 RAKFKQLL effector T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-B*08:01 B2M MHCI -11118 chip0423_229745 8.91 13.66 Chip2 healthy_4 healthy _ 6746 2484 EBV-LMP1-1 EBV 0.91 237 NEG 78 2406 11 EBV LMP1 YLLEMLWRL effector T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*02:01 B2M MHCI -11119 chip0423_22229 7.03 13.07 Chip2 healthy_3 healthy TGTGCCCCTGCATCAGGAGGAAGCTACATACCTACATTT CAPASGGSYIPTF TRAV24*01 TRAJ6*01 8.0 654.0 TGTGCCAGCTGCCGGGACGGGACCTACGAGCAGTACTTC CASCRDGTYEQYF TRBV10-3*01 TRBJ2-7*01 6.0 435.0 CAPASGGSYIPTF_CASCRDGTYEQYF 10 3601 NP44-52 FLU 0.63 474 NP44-52 84 3517 7 InfluenzaA NP CTELKLSDY transitional T cells between effector and memory populations PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*01:01 B2M MHCI -11120 chip0423_309106 -2.93 14.42 Chip2 T1D_4 T1D TGTGTGGTGAACCCTCGAGATAACGACTACAAGCTCAGCTTT CVVNPRDNDYKLSF TRAV12-1*01 TRAJ20*01 15.0 892.0 TGTGCCACCAGCCCGACAGGGGGGGAAGAGACCCAGTACTTC CATSPTGGEETQYF TRBV24-1*01 TRBJ2-5*01 12.0 443.0 CVVNPRDNDYKLSF_CATSPTGGEETQYF 1 3729 G6PC2-LTS-10 IGRP 0.82 59 G6PC2-LTS-10 73 3656 1 HomoSapiens G6PC2 LTSLTILQLY Naive T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*01:01 B2M MHCI -11121 chip0423_699480 -2.39 11.98 Chip2 T1D_4 T1D _ 6746 4306 PGT-178 PGT 0.48 1480 PGT-178 63 4243 1 HomoSapiens PGT LLAGIGTVPI Naive T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*02:01 B2M MHCI -11122 chip0423_512850 7.83 13.57 Chip2 healthy_3 healthy TGTGCCAGCGGTTTGGGGGTTGCCTACGAGCAGTACTTC CASGLGVAYEQYF TRBV27*01 TRBJ2-7*01 5.0 293.0 _CASGLGVAYEQYF 1 3053 NP44-52 FLU 0.68 474 NP44-52 69 2984 7 InfluenzaA NP CTELKLSDY transitional T cells between effector and memory populations PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*01:01 B2M MHCI -11123 chip0423_802983 10.29 13.84 Chip2 T1D_4 T1D TGCATCCTGCCTCTTGATGGTGGTATTGGCTATGGGAGGCTGACATTT CILPLDGGIGYGRLTF TRAV26-2*01 TRAJ52*01 26.0 1083.0 TGTGCCAGCAGCTTAGGGCAAGCCTACGAGCAGTACTTC CASSLGQAYEQYF TRBV7-8*01 TRBJ2-7*01 4.0 199.0 CILPLDGGIGYGRLTF_CASSLGQAYEQYF 1 2414 EBNA3A-193-201 EBV 0.58 1022 NEG 75 2339 11 EBV EBNA3A FLRGRAYGL effector T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-B*08:01 B2M MHCI -11124 chip0423_94258 13.53 9.1 Chip2 T1D_5 T1D TGTGCTCTTCGCACCGGTAACCAGTTCTATTTT CALRTGNQFYF TRAV29/DV5*01 TRAJ49*01 1.0 21.0 CALRTGNQFYF_ 1 3259 EBNA3A-158-166 EBV 0.54 444 NEG 70 3189 10 EBV EBNA3A QAKWRLQTL effector memory T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-B*08:01 B2M MHCI -11125 chip0423_486018 11.09 12.46 Chip2 healthy_4 healthy _ 6746 2136 EBNA3A-193-201 EBV 0.86 1022 NEG 63 2073 10 EBV EBNA3A FLRGRAYGL effector memory T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-B*08:01 B2M MHCI -11126 chip0423_401508 -3.01 13.63 Chip2 T1D_5 T1D TGTGCCAGCAGCACCCCCCGGGCCCGCGGGGCCACTGAGGCTTTCTTT CASSTPRARGATEAFF TRBV11-2*01 TRBJ1-1*01 6.0 38.0 _CASSTPRARGATEAFF 1 3404 IAPP-ILK-8 IAPP 0.58 20 NEG 54 3350 1 HomoSapiens IAPP ILKLQVFL Naive T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-B*08:01 B2M MHCI -11127 chip0423_61545 13.33 11.23 Chip2 healthy_4 healthy TGTGCCAGCAGGGTAGGCCGAGAACCCACCGGGGAGCTGTTTTTT CASRVGREPTGELFF TRBV3-1*01 TRBJ2-2*01 24.0 837.0 _CASRVGREPTGELFF 13 2194 BZLF1-190-197 EBV 0.69 2156 NEG 73 2121 9 EBV BZLF1 RAKFKQLL effector memory T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-B*08:01 B2M MHCI -11128 chip0423_447810 8.06 13.08 Chip2 healthy_3 healthy TGTGCCAGCAGCTTGGAGCCGCATGGCTACACCTTC CASSLEPHGYTF TRBV5-4*01 TRBJ1-2*01 20.0 1148.0 _CASSLEPHGYTF 2 3379 NP44-52 FLU 0.71 474 NP44-52 63 3316 7 InfluenzaA NP CTELKLSDY transitional T cells between effector and memory populations PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*01:01 B2M MHCI -11129 chip0423_24225 7.78 13.4 Chip2 healthy_3 healthy TGTGCCAGCTGCCGGGACGGGACCTACGAGCAGTACTTC CASCRDGTYEQYF TRBV10-3*01 TRBJ2-7*01 32.0 1998.0 _CASCRDGTYEQYF 5 3519 NP44-52 FLU 0.74 474 NP44-52 65 3454 7 InfluenzaA NP CTELKLSDY transitional T cells between effector and memory populations PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*01:01 B2M MHCI -11130 chip0423_757197 11.65 8.99 Chip2 T1D_5 T1D TGTGCAGCAAAGGAAACCTCCTACGACAAGGTGATATTT CAAKETSYDKVIF TRAV13-1*01 TRAJ50*01 13.0 621.0 CAAKETSYDKVIF_ 5 3711 BZLF1-190-197 EBV 0.81 2156 BZLF1-190-197 78 3633 10 EBV BZLF1 RAKFKQLL effector memory T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-B*08:01 B2M MHCI -11131 chip0423_30017 6.21 14.23 Chip2 healthy_3 healthy _ 6746 6515 NP44-52 FLU 0.56 474 NP44-52 77 6438 7 InfluenzaA NP CTELKLSDY transitional T cells between effector and memory populations PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*01:01 B2M MHCI -11132 chip0423_416618 14.98 12.9 Chip2 healthy_4 healthy _ 6746 2146 EBV-BRLF1 EBV 0.88 1264 NEG 70 2076 12 EBV BRLF1 YVLDHLIVV effector T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*02:01 B2M MHCI -11133 chip0423_40508 5.87 9.61 Chip2 T1D_4 T1D _ 6746 8554 EBV-LMP1-1 EBV 0.67 237 NEG 60 8494 6 EBV LMP1 YLLEMLWRL central memory T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*02:01 B2M MHCI -11134 chip0423_512510 -4.44 10.05 Chip2 healthy_3 healthy TGTGTTGTGAAAGGTGCAACACCGGCAAACTACTCTTT CVVKGAa?cTGKLLF TRAV8-2*01 TRAJ37*01 13.0 589.0 CVVKGAa?cTGKLLF_ 1 4004 IAPP-STN-9 IAPP 0.88 48 NEG 63 3941 2 HomoSapiens IAPP STNVGSNTY Naive T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*01:01 B2M MHCI -11135 chip0423_849803 5.68 10.4 Chip2 T1D_6 T1D TGTGCTCCGGGGGGAGCTTCAGGATCCAGCACCCTCACCTTT CAPGGASGSSTLTF TRAV17*01 TRAJ11*01 11.0 242.0 CAPGGASGSSTLTF_ 1 5610 EBV-LMP2-FLY EBV 0.82 355 NEG 61 5549 6 EBV LMP2 FLYALALLL central memory T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*02:01 B2M MHCI -11136 chip0423_434601 5.29 9.0 Chip2 healthy_3 healthy _ 6746 3308 POL-132-140 HIV 0.67 37 NEG 51 3257 6 HIV-1 POL LVGPTPVNI central memory T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*02:01 B2M MHCI -11137 chip0423_2944 -3.25 13.61 Chip2 T1D_6 T1D _ 6746 3315 PGT-178 PGT 0.78 1480 NEG 54 3261 1 HomoSapiens PGT LLAGIGTVPI Naive T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*02:01 B2M MHCI -11138 chip0423_873389 9.94 11.23 Chip2 T1D_4 T1D TGCGCCAGCAGCTTGGAGGGACAGGCCAGCTCCTACGAGCAGTACTTC CASSLEGQASSYEQYF TRBV5-1*01 TRBJ2-7*01 42.0 2064.0 _CASSLEGQASSYEQYF 9 3546 EBV-LMP2A EBV 0.62 700 NEG 57 3489 9 EBV LMP2A CLGGLLTMV effector memory T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*02:01 B2M MHCI -11139 chip0423_570213 -2.6 13.86 Chip2 T1D_6 T1D _ 6746 4312 ZNT8-115-123 ZNT8 0.5 74 NEG 68 4244 1 HomoSapiens ZNT8 LLSLFSLWL Naive T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*02:01 B2M MHCI -11140 chip0423_72484 11.51 12.56 Chip2 T1D_6 T1D TGCGCCCGCAGTCTCCCTCCATGGGGCTGCCTACAATGAGCAGTTCTTC CARSLPPW??gAAYNEQFF TRBV4-3*01 TRBJ2-1*01 16.0 960.0 _CARSLPPW??gAAYNEQFF 1 2268 EBNA3A-193-201 EBV 0.8 1022 NEG 60 2208 11 EBV EBNA3A FLRGRAYGL effector T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-B*08:01 B2M MHCI -11141 chip0423_636479 9.6 10.68 Chip2 healthy_3 healthy _ 6746 5497 PGT-178 PGT 0.58 1480 PGT-178 51 5446 9 HomoSapiens PGT LLAGIGTVPI effector memory T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*02:01 B2M MHCI -11142 chip0423_538934 9.59 13.22 Chip2 healthy_3 healthy TGCGCCAGCAGTTTGCCAGGGAGGAACGGGATATGAGCAGTTCTTC CASSLPGag??gaTGYEQFF TRBV4-3*01 TRBJ2-1*01 55.0 3361.0 _CASSLPGag??gaTGYEQFF 1 2225 POL-132-140 HIV 0.75 37 NEG 57 2168 6 HIV-1 POL LVGPTPVNI central memory T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*02:01 B2M MHCI -11143 chip0423_782419 12.13 12.74 Chip2 healthy_3 healthy TGTGCCGTGGACACCATCGACAGAGGCTCAACCCTGGGGCGGCTATACTTT CAVDTIDRGSTLGRLYF TRAV39*01 TRAJ18*01 18.0 887.0 CAVDTIDRGSTLGRLYF_ 5 3291 M1 FLU 0.44 1250 M1 60 3231 11 InfluenzaA M1 GILGFVFTL effector T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*02:01 B2M MHCI -11144 chip0423_327727 13.32 9.6 Chip2 healthy_4 healthy _ 6746 4419 EBV-BRLF1 EBV 0.9 1264 NEG 63 4356 10 EBV BRLF1 YVLDHLIVV effector memory T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*02:01 B2M MHCI -11145 chip0423_637476 15.34 11.16 Chip2 healthy_3 healthy TGTGCCCTCACTGACAGCTGGGGGAAATTGCAGTTT CALTDSWGKLQF TRAV12-2*01 TRAJ24*01 5.0 639.0 CALTDSWGKLQF_ 7 3573 GAD65-114-122 GAD65 0.71 63 NEG 75 3498 12 HomoSapiens GAD65 VMNILLQYV effector T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*02:01 B2M MHCI -11146 chip0423_286804 5.4 9.46 Chip2 T1D_4 T1D TGCGCCAGCAGTGATGACGGAATGAACACTGAAGCTTTCTTT CASSDDGMNTEAFF TRBV10-2*01 TRBJ1-1*01 9.0 427.0 _CASSDDGMNTEAFF 8 6399 EBV-LMP2A EBV 0.89 700 EBV-LMP2A 71 6328 6 EBV LMP2A CLGGLLTMV central memory T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*02:01 B2M MHCI -11147 chip0423_299034 12.26 13.35 Chip2 T1D_5 T1D TGCAGCGTCGGGACAGCCGATGGCTACACCTTC CSVGTADGYTF TRBV29-1*01 TRBJ1-2*01 11.0 1382.0 _CSVGTADGYTF 4 1869 BZLF1-190-197 EBV 0.88 2156 NEG 75 1794 11 EBV BZLF1 RAKFKQLL effector T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-B*08:01 B2M MHCI -11148 chip0423_555860 9.42 9.25 Chip2 T1D_5 T1D TGTGCCAGCACCCAGGTAGACAGACCCAACTATGGCTACACCTTC CASTQVDRPNYGYTF TRBV7-9*01 TRBJ1-2*01 20.0 857.0 _CASTQVDRPNYGYTF 5 2977 BZLF1-190-197 EBV 0.4 2156 NEG 61 2916 8 EBV BZLF1 RAKFKQLL effector memory T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-B*08:01 B2M MHCI -11149 chip0423_325500 11.85 11.95 Chip2 T1D_6 T1D _ 6746 3414 EBNA3A-193-201 EBV 0.67 1022 NEG 71 3343 11 EBV EBNA3A FLRGRAYGL effector T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-B*08:01 B2M MHCI -11150 chip0423_298360 -1.36 7.01 Chip2 T1D_5 T1D _ 6746 7217 G6PC2-YLK-8 IGRP 0.5 27 NEG 61 7156 3 HomoSapiens G6PC2 YLKTNLFL Naive T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-B*08:01 B2M MHCI -11151 chip0423_834922 -4.5 10.17 Chip2 T1D_6 T1D TGTGCCAGCAGTTTGAGGGGCAACTGGGGGGATACGCAGTATTTT CASSLRGNWGDTQYF TRBV28*01 TRBJ2-3*01 10.0 419.0 _CASSLRGNWGDTQYF 1 4061 ZNT8-VTD-9 ZNT8 0.56 65 NEG 58 4003 2 HomoSapiens ZNT8 VTDAAHLLI Naive T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*01:01 B2M MHCI -11152 chip0423_169347 12.1 13.69 Chip2 healthy_4 healthy TGTGCAGCTCCGCTGGTGGCAGGCAACAAGCTAACTTTT CAAPLVAGNKLTF TRAV13-1*01 TRAJ17*01 11.0 856.0 CAAPLVAGNKLTF_ 1 1249 EBNA3A-193-201 EBV 1.0 1022 NEG 61 1188 11 EBV EBNA3A FLRGRAYGL effector T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-B*08:01 B2M MHCI -11153 chip0423_245704 6.67 11.39 Chip2 healthy_3 healthy _ 6746 7504 NP44-52 FLU 0.89 474 NP44-52 56 7448 7 InfluenzaA NP CTELKLSDY transitional T cells between effector and memory populations PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*01:01 B2M MHCI -11154 chip0423_236746 12.84 8.63 Chip2 T1D_6 T1D TGTGCTGTGCGAATTCTTCCTAACTTTGGAAACGAGAAATTAACCTTT CAVRILPNFGNEKLTF TRAV21*01 TRAJ48*01 46.0 1620.0 CAVRILPNFGNEKLTF_ 2 2708 EBNA3A-158-166 EBV 0.92 444 NEG 77 2631 10 EBV EBNA3A QAKWRLQTL effector memory T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-B*08:01 B2M MHCI -11155 chip0423_197327 -3.91 12.27 Chip2 T1D_4 T1D _ 6746 3926 PTPRN-797-805 PTPRN 0.9 12 NEG 53 3873 1 HomoSapiens PTPRN MVWESGCTV Naive T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*02:01 B2M MHCI -11156 chip0423_657868 -2.98 14.19 Chip2 healthy_3 healthy TGTGCCAGCAGCTCTCCTAGCGGGGGATACAATGAGCAGTTCTTC CASSSPSGGYNEQFF TRBV6-1*01 TRBJ2-1*01 18.0 703.0 _CASSSPSGGYNEQFF 1 3940 MART1-ALA MART1 0.4 269 NEG 47 3893 1 HomoSapiens MART1 ALAGIGILTV Naive T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*02:01 B2M MHCI -11157 chip0423_469591 -3.02 10.87 Chip2 T1D_4 T1D TGTGCCAGCAGCTTAACGGCGGGACAGGGAGTCTACGAGCAGTACTTC CASSLTAGQGVYEQYF TRBV7-2*01 TRBJ2-7*01 20.0 455.0 _CASSLTAGQGVYEQYF 1 4344 G6PC2-YVM-8 IGRP 0.59 8 NEG 73 4271 3 HomoSapiens G6PC2 YVMVTAAL Naive T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-B*08:01 B2M MHCI -11158 chip0423_10531 7.08 13.51 Chip2 healthy_3 healthy _ 6746 4396 NP44-52 FLU 0.57 474 NEG 61 4335 7 InfluenzaA NP CTELKLSDY transitional T cells between effector and memory populations PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*01:01 B2M MHCI -11159 chip0423_245822 -3.61 10.01 Chip2 T1D_6 T1D TGCATCTTGTTAGTCTTGGCTCATTTTCCTGTTATGCACTCAACTTC CILLVLAca?FSCYALNF TRAV26-2*01 TRAJ41*01 4.0 105.0 TGTGCCAGCAGCCAAGATATTCGCCCAGGCGGGCTTGACACTGAAGCTTTCTTT CASSQDIRPGGLDTEAFF TRBV3-1*01 TRBJ1-1*01 17.0 491.0 CILLVLAca?FSCYALNF_CASSQDIRPGGLDTEAFF 1 5213 PGT-178 PGT 0.71 1480 NEG 60 5153 2 HomoSapiens PGT LLAGIGTVPI Naive T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*02:01 B2M MHCI -11160 chip0423_510326 12.02 7.24 Chip2 T1D_6 T1D TGCATCCTCCCACTTGCTGGTGGTACTAGCTATGGAAAGCTGACATTT CILPLAGGTSYGKLTF TRAV26-2*01 TRAJ52*01 33.0 1478.0 TGCAGCGCCGGCCGGGACGGGACTAATGAAAACCTGTTTTTT CSAGRDGTNENLFF TRBV29-1*01 TRBJ1-4*01 4.0 110.0 CILPLAGGTSYGKLTF_CSAGRDGTNENLFF 1 4436 EBNA3A-193-201 EBV 0.64 1022 NEG 75 4361 10 EBV EBNA3A FLRGRAYGL effector memory T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-B*08:01 B2M MHCI -11161 chip0423_667080 10.53 12.09 Chip2 healthy_4 healthy TGTGCCAGCAGTTACTCGGCAGGGTTCACCGGGGAGCTGTTTTTT CASSYSAGFTGELFF TRBV6-5*01 TRBJ2-2*01 33.0 1411.0 _CASSYSAGFTGELFF 1 3019 EBV-BRLF1 EBV 0.88 1264 NEG 79 2940 9 EBV BRLF1 YVLDHLIVV effector memory T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*02:01 B2M MHCI -11162 chip0423_164883 11.79 12.84 Chip2 healthy_3 healthy TGCGCCTGGGGGAATTCAGGATGCGGCACCCTCACCTTT CAWGNSGCGTLTF TRAV12-2*01 TRAJ11*01 1.0 10.0 TGTGCCAGCAGCGGGTTACAGGGATTGGAGACCCAGTACTTC CASSGLQGLETQYF TRBV5-5*01 TRBJ2-5*01 18.0 913.0 CAWGNSGCGTLTF_CASSGLQGLETQYF 1 2581 PGT-178 PGT 0.5 1480 NEG 61 2520 11 HomoSapiens PGT LLAGIGTVPI effector T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*02:01 B2M MHCI -11163 chip0423_244634 10.56 11.37 Chip2 T1D_5 T1D TGTGCCTGGAGTGTCCCCGGGGAGGAGGAAAAACTGTTTTTT CAWSVPGEEEKLFF TRBV30*01 TRBJ1-4*01 1.0 23.0 _CAWSVPGEEEKLFF 1 3818 BZLF1-190-197 EBV 0.5 2156 NEG 62 3756 9 EBV BZLF1 RAKFKQLL effector memory T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-B*08:01 B2M MHCI -11164 chip0423_600919 -4.14 7.02 Chip2 healthy_5 healthy TGTGCCGGCTGTTACCCCCGTGCGGGGTCCGCGCTCCAGCCCCAGCATTTT CAGCYPRAGSALQPQHF TRBV6-5*01 TRBJ1-5*01 9.0 264.0 _CAGCYPRAGSALQPQHF 1 5139 PB1-590-599 FLU 0.69 37 NEG 50 5089 2 InfluenzaA PB1 LVSDGGPNLY Naive T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*01:01 B2M MHCI -11165 chip0423_12872 8.65 11.79 Chip2 healthy_4 healthy TGTGCCAGCAGGGTAGGCCGAGAACCCACCGGGGAGCTGTTTTTT CASRVGREPTGELFF TRBV3-1*01 TRBJ2-2*01 6.0 321.0 _CASRVGREPTGELFF 13 2933 BZLF1-190-197 EBV 0.4 2156 NEG 60 2873 7 EBV BZLF1 RAKFKQLL transitional T cells between effector and memory populations PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-B*08:01 B2M MHCI -11166 chip0423_761678 -2.57 14.54 Chip2 T1D_4 T1D TGTGCTACCTCTGGGGGTTACCAGAAAGTTACCTTT CATSGGYQKVTF TRAV12-1*01 TRAJ13*01 3.0 130.0 TGTGCCAGCAGCTTGGGACAGGCCTACGAGCAGTACTTC CASSLGQAYEQYF TRBV7-8*01 TRBJ2-7*01 1.0 13.0 CATSGGYQKVTF_CASSLGQAYEQYF 1 2889 PGT-178 PGT 0.82 1480 NEG 67 2822 1 HomoSapiens PGT LLAGIGTVPI Naive T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*02:01 B2M MHCI -11167 chip0423_660241 11.21 12.54 Chip2 healthy_4 healthy TGCAGTGCTAGAGATAGAGGGTCGGAGAACACCGGGGAGCTGTTTTTT CSARDRGSENTGELFF TRBV20-1*01 TRBJ2-2*01 37.0 1740.0 _CSARDRGSENTGELFF 3 2519 BZLF1-190-197 EBV 1.0 2156 NEG 64 2455 11 EBV BZLF1 RAKFKQLL effector T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-B*08:01 B2M MHCI -11168 chip0423_675021 5.96 13.35 Chip2 healthy_3 healthy TGTGTGGTGAACGGGGAAAATGCCAGGCTCCTGTTT CVVNGENARLLF TRAV12-1*01 TRAJ31*01 12.0 1105.0 TGTGCCAGCAGTGAAATGTGGGGAGCACCCCTCCACTTT CASSEMWGAPLHF TRBV2*01 TRBJ1-6*01 6.0 493.0 CVVNGENARLLF_CASSEMWGAPLHF 1 6808 NP44-52 FLU 0.97 474 NP44-52 63 6745 7 InfluenzaA NP CTELKLSDY transitional T cells between effector and memory populations PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*01:01 B2M MHCI -11169 chip0423_828674 12.28 13.01 Chip2 T1D_5 T1D TGTGCCAGCAGCCCTCTTGGGAGCAATGAAAAACTGTTTTTT CASSPLGSNEKLFF TRBV7-9*01 TRBJ1-4*01 21.0 508.0 _CASSPLGSNEKLFF 20 2288 BZLF1-190-197 EBV 0.92 2156 NEG 67 2221 11 EBV BZLF1 RAKFKQLL effector T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-B*08:01 B2M MHCI -11170 chip0423_608963 5.6 11.99 Chip2 healthy_3 healthy TGTGCCAGCAGCTTAGTGGGGGACGGACTTGAAGCTTTCTTT CASSLVGDGLEAFF TRBV11-3*01 TRBJ1-1*01 40.0 1749.0 _CASSLVGDGLEAFF 1 5259 PGT-178 PGT 0.92 1480 NEG 54 5205 7 HomoSapiens PGT LLAGIGTVPI transitional T cells between effector and memory populations PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*02:01 B2M MHCI -11171 chip0423_560279 -4.48 10.04 Chip2 healthy_3 healthy TGTGCCAGCAGTTCGACTGAAAGGAACGCCGGTGAGCAGTTCTTC CASSSTERNAGEQFF TRBV12-3*01,TRBV12-4*01 TRBJ2-1*01 1.0 12.0 _CASSSTERNAGEQFF 1 4716 PGT-178 PGT 1.0 1480 NEG 53 4663 2 HomoSapiens PGT LLAGIGTVPI Naive T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*02:01 B2M MHCI -11172 chip0423_708013 -2.49 15.34 Chip2 T1D_4 T1D TGCATCCTCCCTCTTGCTGGTGGTGCTAGCTATGGAAAGCTGACATTT CILPLAGGASYGKLTF TRAV26-2*01 TRAJ52*01 9.0 368.0 TGTGCCAGCAGCGGGGTGGGAACTGACGGGGAGCTGTTTTTT CASSGVGTDGELFF TRBV7-8*01 TRBJ2-2*01 38.0 1786.0 CILPLAGGASYGKLTF_CASSGVGTDGELFF 1 2029 PGT-178 PGT 0.62 1480 NEG 49 1980 1 HomoSapiens PGT LLAGIGTVPI Naive T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*02:01 B2M MHCI -11173 chip0423_61785 6.54 11.21 Chip2 T1D_5 T1D TGTGCCACCAGTGATTTAAGCGGCTACGAGCAGTACTTC CATSDLSGYEQYF TRBV24-1*01 TRBJ2-7*01 15.0 675.0 _CATSDLSGYEQYF 1 3970 BZLF1-190-197 EBV 0.5 2156 NEG 55 3915 7 EBV BZLF1 RAKFKQLL transitional T cells between effector and memory populations PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-B*08:01 B2M MHCI -11174 chip0423_206608 12.54 13.86 Chip2 T1D_4 T1D TGTGCCAGCAGCTTAGCGGTCAGAGAAGGGCCCCAGCATTTT CASSLAVREGPQHF TRBV7-9*01 TRBJ1-5*01 35.0 1471.0 _CASSLAVREGPQHF 1 1374 BZLF1-190-197 EBV 1.0 2156 NEG 73 1301 11 EBV BZLF1 RAKFKQLL effector T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-B*08:01 B2M MHCI -11175 chip0423_639530 14.76 12.4 Chip2 healthy_3 healthy _ 6746 3419 PB1-590-599 FLU 0.52 37 PB1-590-599 64 3355 12 InfluenzaA PB1 LVSDGGPNLY effector T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*01:01 B2M MHCI -11176 chip0423_634678 11.98 13.39 Chip2 healthy_3 healthy TGTGCCAGCAGGCCCCTCTTAGGGGGGGGGTACGCGCAGTACTTG CASRPLLGGGYAQYL TRBV6-1*01 TRBJ2-7*01 6.0 36.0 _CASRPLLGGGYAQYL 1 1967 EBV-BRLF1 EBV 0.77 1264 NEG 68 1899 11 EBV BRLF1 YVLDHLIVV effector T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*02:01 B2M MHCI -11177 chip0423_705168 5.7 8.71 Chip2 healthy_3 healthy TGTGCTGTCTTAATGGATAGCAACTATCAGTTAATCTGG CAVLMDSNYQLIW TRAV21*01 TRAJ33*01 1.0 19.0 CAVLMDSNYQLIW_ 20 6984 EBV-LMP2A EBV 0.65 700 EBV-LMP2A 67 6917 6 EBV LMP2A CLGGLLTMV central memory T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*02:01 B2M MHCI -11178 chip0423_308703 -3.33 8.21 Chip2 healthy_4 healthy TGTGCCGTTAACAATGACATGCGCTTT CAVNNDMRF TRAV12-2*01 TRAJ43*01 1.0 101.0 CAVNNDMRF_ 1 5058 IGRP-228-236 IGRP 0.56 16 NEG 61 4997 2 HomoSapiens IGRP LNIDLLWSV Naive T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*02:01 B2M MHCI -11179 chip0423_248061 15.49 11.47 Chip2 T1D_4 T1D _ 6746 2626 BZLF1-190-197 EBV 0.85 2156 BZLF1-190-197 64 2562 12 EBV BZLF1 RAKFKQLL effector T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-B*08:01 B2M MHCI -11180 chip0423_779367 7.92 11.67 Chip2 healthy_3 healthy TGTGCTCTTTCAGGAAGCCAAGGAAATCTCATCTTT CALSGSQGNLIF TRAV3*01 TRAJ42*01 1.0 155.0 TGTGCCAGTAGTTCCAGGAGCTCCTACGAGCAGTACTTC CASSSRSSYEQYF TRBV19*01 TRBJ2-7*01 16.0 943.0 CALSGSQGNLIF_CASSSRSSYEQYF 1 5706 M1 FLU 0.75 1250 NEG 58 5648 7 InfluenzaA M1 GILGFVFTL transitional T cells between effector and memory populations PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*02:01 B2M MHCI -11181 chip0423_218628 -2.52 12.73 Chip2 healthy_3 healthy TGCGCCAGCAGTGAGACAGGTAGCTCCTACGAGCAGTACTTC CASSETGSSYEQYF TRBV10-2*01 TRBJ2-7*01 22.0 1396.0 _CASSETGSSYEQYF 1 3723 G6PC2-LTS-10 IGRP 1.0 59 G6PC2-LTS-10 58 3665 4 HomoSapiens G6PC2 LTSLTILQLY Naive T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*01:01 B2M MHCI -11182 chip0423_105918 11.34 10.65 Chip2 T1D_5 T1D TGTGCTGTTCTCCCCTCTAACGACTACAAGCTCAGCTTT CAVLPSNDYKLSF TRAV12-2*01,TRAV21*01 TRAJ20*01 5.0 196.0 TGTGCCAGCAGCCATACCCAAGATATCCCCAACTATGGCTACACCTTC CASSHTQDIPNYGYTF TRBV12-3*01,TRBV12-4*01 TRBJ1-2*01 10.0 452.0 CAVLPSNDYKLSF_CASSHTQDIPNYGYTF 1 4030 BZLF1-190-197 EBV 0.7 2156 NEG 64 3966 9 EBV BZLF1 RAKFKQLL effector memory T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-B*08:01 B2M MHCI -11183 chip0423_824597 -3.53 12.09 Chip2 healthy_3 healthy TGTGCCCCAGGAGAGGGAGGAAAGCTTATCTTC CAPGEGGKLIF TRAV12-1*01 TRAJ23*01 9.0 1115.0 CAPGEGGKLIF_ 1 4524 PGT-178 PGT 0.56 1480 NEG 65 4459 1 HomoSapiens PGT LLAGIGTVPI Naive T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*02:01 B2M MHCI -11184 chip0423_797599 11.33 13.51 Chip2 healthy_3 healthy TGTGCCAGTAGTCCAAGTGGGGCCACTCAGCCCCAGCATTTT CASSPSGATQPQHF TRBV19*01 TRBJ1-5*01 3.0 59.0 _CASSPSGATQPQHF 1 2874 M1 FLU 0.46 1250 NEG 63 2811 11 InfluenzaA M1 GILGFVFTL effector T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*02:01 B2M MHCI -11185 chip0423_299375 12.42 13.76 Chip2 T1D_5 T1D TGTGCCAGCAGCTTCTGGATGAACACCGGGGAGCTGTTTTTT CASSFWMNTGELFF TRBV7-3*01 TRBJ2-2*01 13.0 756.0 _CASSFWMNTGELFF 1 1701 BZLF1-190-197 EBV 0.5 2156 NEG 54 1647 11 EBV BZLF1 RAKFKQLL effector T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-B*08:01 B2M MHCI -11186 chip0423_232332 -2.6 7.95 Chip2 healthy_4 healthy _ 6746 6106 PGT-178 PGT 1.0 1480 NEG 63 6043 2 HomoSapiens PGT LLAGIGTVPI Naive T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*02:01 B2M MHCI -11187 chip0423_639031 7.98 8.34 Chip2 healthy_3 healthy _ 6746 5771 NP44-52 FLU 1.0 474 NP44-52 60 5711 8 InfluenzaA NP CTELKLSDY effector memory T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*01:01 B2M MHCI -11188 chip0423_313344 -3.98 10.25 Chip2 healthy_3 healthy TGCAGTGTCGCGCGGGGGCCTAAAAAAGCACGCAGTCAGCCCCAGCATTTT CSVARGPKKARSQPQHF TRBV20-1*01 TRBJ1-5*01 20.0 476.0 _CSVARGPKKARSQPQHF 1 4925 PGT-178 PGT 0.88 1480 PGT-178 59 4866 2 HomoSapiens PGT LLAGIGTVPI Naive T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*02:01 B2M MHCI -11189 chip0423_188987 -2.7 14.2 Chip2 T1D_6 T1D TGCCTCGTGACCTGGGCCCCCTCCCTTTGGTGGCTCCGATACGCTGCTGTTT CLVTWAPSct??ttGGSDTLLF TRAV4*01 TRAJ4*01 17.0 960.0 TGTGCCAGCAGTTTTGCCCTAGCGGAATACAATGAGCAGTTCTTC CASSFALAEYNEQFF TRBV12-3*01,TRBV12-4*01 TRBJ2-1*01 9.0 361.0 CLVTWAPSct??ttGGSDTLLF_CASSFALAEYNEQFF 1 4026 PTPRN-HAR-8 PTPRN 0.67 13 NEG 57 3969 1 HomoSapiens PTPRN HARIKLKV Naive T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-B*08:01 B2M MHCI -11190 chip0423_669992 0.51 8.76 Chip2 healthy_3 healthy TGTGCCAGCATGACGGGATATGGCTACACCTTC CASMTGYGYTF TRBV28*01 TRBJ1-2*01 13.0 1215.0 _CASMTGYGYTF 1 6499 MART1-ALA MART1 0.55 269 NEG 56 6443 4 HomoSapiens MART1 ALAGIGILTV Naive T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*02:01 B2M MHCI -11191 chip0423_134914 -2.87 14.67 Chip2 healthy_5 healthy TGTGCTGTTAGATTTTCAGGTTACGGCACCCTCACCTTT CAVRFSGYGTLTF TRAV1-2*01 TRAJ11*01 11.0 930.0 TGTGCCAGCAGCTTAGGAGGGGGAGAGGGGGCCAGTGAGCAGTTCTTC CASSLGGGEGASEQFF TRBV7-6*01 TRBJ2-1*01 2.0 23.0 CAVRFSGYGTLTF_CASSLGGGEGASEQFF 1 2143 ZNT8-LTS-9 ZNT8 0.85 2 NEG 59 2084 1 HomoSapiens ZNT8 LTSFLLSLF Naive T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*01:01 B2M MHCI -11192 chip0423_742622 -1.58 9.73 Chip2 healthy_3 healthy _ 6746 6597 PGT-178 PGT 0.68 1480 PGT-178 49 6548 3 HomoSapiens PGT LLAGIGTVPI Naive T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*02:01 B2M MHCI -11193 chip0423_729681 12.77 13.52 Chip2 T1D_4 T1D TGTGCCCGCAGCTTAACGGTTCTGGCAGGTCCAAACACAGACGCTTTCTTT CARSLTVLAGPNTDAFF TRBV7-3*01 TRBJ1-1*01 9.0 448.0 _CARSLTVLAGPNTDAFF 1 2465 BZLF1-190-197 EBV 1.0 2156 NEG 67 2398 11 EBV BZLF1 RAKFKQLL effector T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-B*08:01 B2M MHCI -11194 chip0423_592512 -1.98 10.13 Chip2 T1D_4 T1D TGCGCCAGCAGCGGGGGGCAGGGTGTACCTTACGAGCAGTACTTC CASSGGQGVPYEQYF TRBV5-1*01 TRBJ2-7*01 23.0 1186.0 _CASSGGQGVPYEQYF 1 3971 PGT-178 PGT 0.79 1480 PGT-178 59 3912 3 HomoSapiens PGT LLAGIGTVPI Naive T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*02:01 B2M MHCI -11195 chip0423_353011 13.21 11.7 Chip2 T1D_5 T1D TGTGCCAGCAGCTTATTAGGACGATCGAACACTGAAGCTTTCTTT CASSLLGRSNTEAFF TRBV7-9*01 TRBJ1-1*01 29.0 663.0 _CASSLLGRSNTEAFF 8 2005 BZLF1-190-197 EBV 0.78 2156 NEG 47 1958 9 EBV BZLF1 RAKFKQLL effector memory T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-B*08:01 B2M MHCI -11196 chip0423_490327 13.75 10.92 Chip2 healthy_4 healthy TGTGCCAGCAGTTGCGGACAGGCCTACGAGCAGTACTTA CASSCGQAYEQYL TRBV7-8*01 TRBJ2-7*01 4.0 317.0 _CASSCGQAYEQYL 1 1904 EBNA3A-193-201 EBV 0.86 1022 NEG 70 1834 12 EBV EBNA3A FLRGRAYGL effector T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-B*08:01 B2M MHCI -11197 chip0423_513709 14.68 9.93 Chip2 healthy_4 healthy TGTGCTGTGGAGGATCAAGGGAGATCTTATAACACCGACAAGCTCATCTTT CAVEDQGRSYNTDKLIF TRAV2*01 TRAJ34*01 75.0 1916.0 CAVEDQGRSYNTDKLIF_ 15 2843 BZLF1-190-197 EBV 0.8 2156 NEG 64 2779 12 EBV BZLF1 RAKFKQLL effector T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-B*08:01 B2M MHCI -11198 chip0423_662422 -1.18 6.79 Chip2 healthy_3 healthy _ 6746 4314 PGT-178 PGT 0.71 1480 NEG 55 4259 3 HomoSapiens PGT LLAGIGTVPI Naive T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*02:01 B2M MHCI -11199 chip0423_572945 7.76 13.26 Chip2 T1D_6 T1D TGTGCCAGCAATCGGGGGTACACAGATACGCAGTATTTT CASNRGYTDTQYF TRBV12-3*01,TRBV12-4*01 TRBJ2-3*01 1.0 11.0 _CASNRGYTDTQYF 1 3553 ROTA-VP6 ROTA 0.8 47 NEG 51 3502 7 RotavirusA VP6 TLLANVTAV transitional T cells between effector and memory populations PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*02:01 B2M MHCI -11200 chip0423_489998 11.44 8.93 Chip2 healthy_4 healthy TGTGCCAGCAGCTTAAACGTCGAGGAGGGCGCAGGAAACACCATATATTTT CASSLNVEEGAGNTIYF TRBV7-6*01 TRBJ1-3*01 3.0 40.0 _CASSLNVEEGAGNTIYF 1 4194 BZLF1-190-197 EBV 0.75 2156 NEG 69 4125 10 EBV BZLF1 RAKFKQLL effector memory T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-B*08:01 B2M MHCI -11201 chip0423_481942 11.6 13.37 Chip2 T1D_5 T1D TGTGCAATGAGGGCCATTGAGGGGGCAAACAACCTCTTCTTT CAMRAIEGANNLFF TRAV14/DV4*01 TRAJ36*01 19.0 788.0 TGTGCCAGCACCTCGGGGCGGGTTGTCGATGAGCAGTTCTTC CASTSGRVVDEQFF TRBV6-1*01 TRBJ2-1*01 2.0 78.0 CAMRAIEGANNLFF_CASTSGRVVDEQFF 1 2211 BZLF1-190-197 EBV 0.75 2156 NEG 63 2148 11 EBV BZLF1 RAKFKQLL effector T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-B*08:01 B2M MHCI -11202 chip0423_124941 -2.7 11.31 Chip2 healthy_4 healthy TGTGCCGTGCAGGGAGGTGCTGACGGACTCACCTTT CAVQGGADGLTF TRAV12-2*01 TRAJ45*01 6.0 363.0 CAVQGGADGLTF_ 1 3991 PGT-178 PGT 0.53 1480 NEG 56 3935 4 HomoSapiens PGT LLAGIGTVPI Naive T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*02:01 B2M MHCI -11203 chip0423_551081 6.16 13.65 Chip2 healthy_3 healthy _ 6746 4023 NP44-52 FLU 0.6 474 NP44-52 71 3952 7 InfluenzaA NP CTELKLSDY transitional T cells between effector and memory populations PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*01:01 B2M MHCI -11204 chip0423_296404 7.99 7.93 Chip2 T1D_5 T1D _ 6746 5374 BZLF1-190-197 EBV 0.64 2156 BZLF1-190-197 52 5322 8 EBV BZLF1 RAKFKQLL effector memory T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-B*08:01 B2M MHCI -11205 chip0423_438073 11.34 8.06 Chip2 T1D_4 T1D TGTGCCAGCAGCGCAGACAGCGATTATGGCTACACCTTC CASSADSDYGYTF TRBV9*01 TRBJ1-2*01 7.0 514.0 _CASSADSDYGYTF 5 5959 EBV-LMP1-1 EBV 0.5 237 NEG 68 5891 10 EBV LMP1 YLLEMLWRL effector memory T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*02:01 B2M MHCI -11206 chip0423_458148 -4.32 10.29 Chip2 T1D_4 T1D TGTGCAGCAAGTAACAACAATGCCAGACTCATGTTT CAASNNNARLMF TRAV13-1*01 TRAJ31*01 25.0 1842.0 TGTGCCAGCAGCCTGTCGGGTCAGCCCCAGCATTTT CASSLSGQPQHF TRBV7-9*01 TRBJ1-5*01 17.0 1073.0 CAASNNNARLMF_CASSLSGQPQHF 1 3515 NP140-148 FLU 0.67 102 NEG 57 3458 2 InfluenzaA NP HSNLNDATY Naive T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*01:01 B2M MHCI -11207 chip0423_6438 -2.63 13.62 Chip2 T1D_6 T1D TGTGCCAGCAGTTTAGTCGGCGTAGACTCTAGCACAGATACGCAGTATTTT CASSLVGVDSSTDTQYF TRBV28*01 TRBJ2-3*01 22.0 1089.0 _CASSLVGVDSSTDTQYF 1 3911 PGT-178 PGT 0.91 1480 PGT-178 66 3845 1 HomoSapiens PGT LLAGIGTVPI Naive T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*02:01 B2M MHCI -11208 chip0423_775802 10.67 13.72 Chip2 healthy_3 healthy TGTGCCAGCCGCTTGGCGCCGCATGGCTACACCTTC CASRLAPHGYTF TRBV5-4*01 TRBJ1-2*01 3.0 141.0 _CASRLAPHGYTF 1 2614 NP44-52 FLU 0.84 474 NP44-52 58 2556 11 InfluenzaA NP CTELKLSDY effector T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*01:01 B2M MHCI -11209 chip0423_879612 -1.19 8.26 Chip2 T1D_4 T1D GGTGCCAGCAGTGAATGGCCAACCTCCTACGAGCAGTACTTC GASSEWPTSYEQYF TRBV6-1*01 TRBJ2-7*01 6.0 350.0 _GASSEWPTSYEQYF 1 6392 Nef13-20 HIV 0.82 19 NEG 55 6337 3 HIV-1 Nef WPTVRERM Naive T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-B*08:01 B2M MHCI -11210 chip0423_713958 5.47 11.41 Chip2 healthy_3 healthy TGTGCATTCGCTACGCACTGCTGGTGGTACTAGCTGTGGTTGGCTGACATAT CAFATHCWtg??gtTSCGWLTY TRAV14/DV4*01 TRAJ52*01 17.0 1128.0 CAFATHCWtg??gtTSCGWLTY_ 1 7293 NP44-52 FLU 0.47 474 NEG 56 7237 6 InfluenzaA NP CTELKLSDY central memory T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*01:01 B2M MHCI -11211 chip0423_387531 13.22 11.36 Chip2 T1D_4 T1D TGTGCTGTGAGTGTTGGAGTAGGGGCCCAGAAGCTGGTCTTT CAVSVGVGAQKLVF TRAV8-6*01 TRAJ54*01 26.0 1593.0 CAVSVGVGAQKLVF_ 1 3131 BZLF1-190-197 EBV 0.83 2156 NEG 69 3062 9 EBV BZLF1 RAKFKQLL effector memory T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-B*08:01 B2M MHCI -11212 chip0423_650143 7.15 10.13 Chip2 T1D_4 T1D _ 6746 9059 NP140-148 FLU 0.42 102 NEG 64 8995 7 InfluenzaA NP HSNLNDATY transitional T cells between effector and memory populations PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*01:01 B2M MHCI -11213 chip0423_207736 11.64 13.26 Chip2 healthy_3 healthy TGTGCCGTGGGCAACACAGGCAAACTAATCTTT CAVGNTGKLIF TRAV8-1*01 TRAJ37*01 5.0 298.0 TGTGCCAGCCTGGGACTGGCTCTTGGCTCCTACAATGAGCAGTTCTTC CASLGLALGSYNEQFF TRBV27*01 TRBJ2-1*01 16.0 900.0 CAVGNTGKLIF_CASLGLALGSYNEQFF 1 2743 EBV-BRLF1 EBV 0.4 1264 NEG 63 2680 11 EBV BRLF1 YVLDHLIVV effector T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*02:01 B2M MHCI -11214 chip0423_484493 11.72 13.42 Chip2 T1D_4 T1D TGTGCCAGCAGCCAAGTCAACAACCCGGGGGATGGCTACACCTTC CASSQVNNPGDGYTF TRBV14*01 TRBJ1-2*01 2.0 26.0 _CASSQVNNPGDGYTF 94 2039 EBNA3A-158-166 EBV 0.68 444 NEG 51 1988 11 EBV EBNA3A QAKWRLQTL effector T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-B*08:01 B2M MHCI -11215 chip0423_712842 10.08 10.19 Chip2 T1D_4 T1D _ 6746 5096 EBNA3A-158-166 EBV 0.44 444 NEG 60 5036 9 EBV EBNA3A QAKWRLQTL effector memory T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-B*08:01 B2M MHCI -11216 chip0423_215925 -0.56 8.8 Chip2 healthy_4 healthy TGCGCCAGCAGCCATACCGGGACCCAAGAGACCCAGTACTTC CASSHTGTQETQYF TRBV4-1*01 TRBJ2-5*01 14.0 445.0 _CASSHTGTQETQYF 1 5141 PGT-178 PGT 0.48 1480 NEG 64 5077 4 HomoSapiens PGT LLAGIGTVPI Naive T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*02:01 B2M MHCI -11217 chip0423_374697 10.43 13.99 Chip2 healthy_3 healthy _ 6746 1872 NP44-52 FLU 0.67 474 NEG 54 1818 11 InfluenzaA NP CTELKLSDY effector T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*01:01 B2M MHCI -11218 chip0423_14488 14.71 11.53 Chip2 T1D_5 T1D TGTGCAGAGATGGAAACCTCCTACGACAAGGTGATATTT CAEMETSYDKVIF TRAV13-2*01 TRAJ50*01 1.0 28.0 TGTGCCAGCAGCTCCTTAAGCGGGGGGGCAGGAAATGAGCAGTTCTTC CASSSLSGGAGNEQFF TRBV7-9*01 TRBJ2-1*01 7.0 438.0 CAEMETSYDKVIF_CASSSLSGGAGNEQFF 27 2421 BZLF1-190-197 EBV 0.83 2156 BZLF1-190-197 70 2351 12 EBV BZLF1 RAKFKQLL effector T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-B*08:01 B2M MHCI -11219 chip0423_326059 -4.73 9.72 Chip2 healthy_3 healthy _ 6746 5044 GAD2-VSA-10 GAD65 0.92 21 GAD2-VSA-10 55 4989 2 HomoSapiens GAD2 VSATAGTTVY Naive T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*01:01 B2M MHCI -11220 chip0423_430290 -2.62 15.11 Chip2 T1D_6 T1D TGTGCAGCCCCTTATACCGGCACTGCCAGTAAACTCTCCTTT CAAPYTGTASKLSF TRAV29/DV5*01 TRAJ44*01 22.0 1406.0 TGTGCCAGCAGTCCGGGACAAGCCAACGTCCTGACTTTC CASSPGQANVLTF TRBV27*01 TRBJ2-6*01 18.0 1179.0 CAAPYTGTASKLSF_CASSPGQANVLTF 1 2799 MART1-ALA MART1 0.6 269 NEG 56 2743 1 HomoSapiens MART1 ALAGIGILTV Naive T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*02:01 B2M MHCI -11221 chip0423_453335 6.35 11.9 Chip2 T1D_6 T1D TGTGCCAGCAGTAAACAGGGAGGGCAGCCCCAGCATTTT CASSKQGGQPQHF TRBV28*01 TRBJ1-5*01 19.0 953.0 _CASSKQGGQPQHF 2 6445 EBNA3A-158-166 EBV 0.57 444 EBNA3A-158-166 53 6392 7 EBV EBNA3A QAKWRLQTL transitional T cells between effector and memory populations PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-B*08:01 B2M MHCI -11222 chip0423_280735 7.48 13.33 Chip2 healthy_3 healthy TGTGCCCCTGCATCAGGAGGAAGCTACGTACCTCCCTTT CAPASGGSYVPPF TRAV24*01 TRAJ6*01 4.0 182.0 TGTGCCAGCTGCCGGGACGGGACCTACGAGCAGTACTTC CASCRDGTYEQYF TRBV10-3*01 TRBJ2-7*01 14.0 852.0 CAPASGGSYVPPF_CASCRDGTYEQYF 1 3258 NP44-52 FLU 0.61 474 NP44-52 57 3201 7 InfluenzaA NP CTELKLSDY transitional T cells between effector and memory populations PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*01:01 B2M MHCI -11223 chip0423_877999 6.12 12.76 Chip2 healthy_3 healthy TGTGCTGGAGCTCTGGGGGGGGGGAGCCAAGGCAATCTCATGTTC CAGALGGGSQGNLMF TRAV27*01 TRAJ42*01 3.0 52.0 TGTGCCAGTAGTATTAGAAGCGGCTATGAGCAGTTCTTC CASSIRSGYEQFF TRBV19*01 TRBJ2-1*01 1.0 10.0 CAGALGGGSQGNLMF_CASSIRSGYEQFF 1 5821 M1 FLU 0.56 1250 NEG 49 5772 7 InfluenzaA M1 GILGFVFTL transitional T cells between effector and memory populations PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*02:01 B2M MHCI -11224 chip0423_128964 11.75 8.16 Chip2 healthy_4 healthy TGTGCCAGCAGCTCCGGACAGGCCTACGAGCAGTACTTC CASSSGQAYEQYF TRBV7-8*01 TRBJ2-7*01 7.0 637.0 _CASSSGQAYEQYF 49 2771 EBNA3A-193-201 EBV 0.88 1022 NEG 59 2712 10 EBV EBNA3A FLRGRAYGL effector memory T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-B*08:01 B2M MHCI -11225 chip0423_260759 -3.49 13.13 Chip2 healthy_4 healthy _ 6746 4424 PGT-178 PGT 0.55 1480 NEG 55 4369 1 HomoSapiens PGT LLAGIGTVPI Naive T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*02:01 B2M MHCI -11226 chip0423_227935 8.67 11.79 Chip2 healthy_3 healthy TGTGCCGTAGGAATAGGAACTGCTCTGATCTTT CAVGIGTALIF TRAV12-2*01 TRAJ15*01 1.0 109.0 CAVGIGTALIF_ 1 4704 M1 FLU 0.64 1250 M1 51 4653 7 InfluenzaA M1 GILGFVFTL transitional T cells between effector and memory populations PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*02:01 B2M MHCI -11227 chip0423_610200 -3.8 10.17 Chip2 healthy_5 healthy TCTTCAGCCAGTGAAGGGATTGCCAGATGCTGCTTTTC SSASEGa?tCQMLLF TRAV13-1*01 TRAJ16*01 3.0 158.0 TGTGCCAGCAGCTTTCCGGGACAGGGTATCCACGAGCAGTTCTTC CASSFPGQGIHEQFF TRBV7-2*01 TRBJ2-1*01 28.0 1886.0 SSASEGa?tCQMLLF_CASSFPGQGIHEQFF 1 4539 INS-MAL-8 INS 0.56 38 NEG 54 4485 2 HomoSapiens INS MALWMRLL Naive T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-B*08:01 B2M MHCI -11228 chip0423_239824 11.45 11.02 Chip2 healthy_3 healthy _ 6746 3505 EBV-BLMF1 EBV 0.5 2531 NEG 53 3452 9 EBV BLMF1 GLCTLVAML effector memory T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*02:01 B2M MHCI -11229 chip0423_469224 -2.2 15.86 Chip2 T1D_5 T1D TGTGCAGGGCTAGGGACCTCAGGAACCTACAAGTACCTCTTT CAGLGTSGTYKYLF TRAV25*01 TRAJ40*01 11.0 345.0 TGCAGCGTGGATTTGAGCACAGCTTTCTTT CSVDLSTAFF TRBV29-1*01 TRBJ1-1*01 37.0 2951.0 CAGLGTSGTYKYLF_CSVDLSTAFF 1 952 IAPP-STN-9 IAPP 0.69 48 NEG 49 903 1 HomoSapiens IAPP STNVGSNTY Naive T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*01:01 B2M MHCI -11230 chip0423_769400 11.59 7.73 Chip2 T1D_5 T1D TGTGCAGCAAGTGAAACCTCCTACGACAAGGTGATATTT CAASETSYDKVIF TRAV13-1*01 TRAJ50*01 4.0 335.0 CAASETSYDKVIF_ 51 4214 BZLF1-190-197 EBV 0.57 2156 BZLF1-190-197 51 4163 10 EBV BZLF1 RAKFKQLL effector memory T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-B*08:01 B2M MHCI -11231 chip0423_807510 -2.22 10.56 Chip2 T1D_4 T1D _ 6746 3735 MART1-ALA MART1 0.45 269 NEG 68 3667 3 HomoSapiens MART1 ALAGIGILTV Naive T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*02:01 B2M MHCI -11232 chip0423_452616 7.15 12.85 Chip2 healthy_3 healthy TGCGCCAGCAGCCAAGATGGACTAGCGGCAACTAGCACAGATACGCAGTATTTT CASSQDGLAATSTDTQYF TRBV4-1*01 TRBJ2-3*01 39.0 1296.0 _CASSQDGLAATSTDTQYF 6 3757 NP44-52 FLU 0.57 474 NEG 53 3704 7 InfluenzaA NP CTELKLSDY transitional T cells between effector and memory populations PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*01:01 B2M MHCI -11233 chip0423_295413 10.93 10.82 Chip2 healthy_3 healthy TGTGCTTCGTGCAGCAGTGCTTCCAAGATCTTCTTT CASCSSASKIFF TRAV9-2*01 TRAJ3*01 3.0 148.0 TGTGCCAGCAGCGGACCCCACGCTAACTATGGCTACACCTTC CASSGPHANYGYTF TRBV9*01 TRBJ1-2*01 9.0 645.0 CASCSSASKIFF_CASSGPHANYGYTF 1 4300 NP44-52 FLU 0.8 474 NP44-52 63 4237 9 InfluenzaA NP CTELKLSDY effector memory T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*01:01 B2M MHCI -11234 chip0423_580190 11.22 12.08 Chip2 healthy_4 healthy TGTGCTGTGGAGAAGAAGAACACCGACAAGCTCATCTTT CAVEKKNTDKLIF TRAV21*01 TRAJ34*01 1.0 86.0 TGTGCCAGCAGCTTAAGCCACCCGCCTGGAAACACCATATACCTT CASSLSHPPGNTIYL TRBV13*01 TRBJ1-3*01 13.0 262.0 CAVEKKNTDKLIF_CASSLSHPPGNTIYL 1 2521 BZLF1-190-197 EBV 0.86 2156 NEG 52 2469 11 EBV BZLF1 RAKFKQLL effector T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-B*08:01 B2M MHCI -11235 chip0423_471723 4.77 11.84 Chip2 healthy_4 healthy TGTGCCAGCAGTGAATTAGGGGATACGCAGTATTTT CASSELGDTQYF TRBV25-1*01 TRBJ2-3*01 3.0 68.0 _CASSELGDTQYF 15 2306 M1 FLU 1.0 1250 NEG 66 2240 6 InfluenzaA M1 GILGFVFTL central memory T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*02:01 B2M MHCI -11236 chip0423_262155 9.45 13.92 Chip2 T1D_6 T1D _ 6746 1395 M1 FLU 0.83 1250 NEG 41 1354 11 InfluenzaA M1 GILGFVFTL effector T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*02:01 B2M MHCI -11237 chip0423_376220 -3.48 13.86 Chip2 healthy_3 healthy _ 6746 3071 PGT-178 PGT 0.6 1480 PGT-178 42 3029 1 HomoSapiens PGT LLAGIGTVPI Naive T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*02:01 B2M MHCI -11238 chip0423_367518 7.23 13.74 Chip2 healthy_3 healthy _ 6746 3602 NP44-52 FLU 0.79 474 NP44-52 71 3531 6 InfluenzaA NP CTELKLSDY central memory T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*01:01 B2M MHCI -11239 chip0423_652012 11.53 11.09 Chip2 healthy_3 healthy TGTGCTTCGTGCAGCAGTGCTTCCAAGATCTTCTTT CASCSSASKIFF TRAV9-2*01 TRAJ3*01 7.0 385.0 TGTGCCAGCCGCGCACCCCCCGCTCCCTATGGCTACACCTTC CASRAPPAPYGYTF TRBV9*01 TRBJ1-2*01 7.0 582.0 CASCSSASKIFF_CASRAPPAPYGYTF 1 3312 NP44-52 FLU 0.77 474 NP44-52 58 3254 9 InfluenzaA NP CTELKLSDY effector memory T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*01:01 B2M MHCI -11240 chip0423_790361 8.72 8.74 Chip2 T1D_4 T1D _ 6746 6930 BZLF1-190-197 EBV 0.85 2156 BZLF1-190-197 60 6870 8 EBV BZLF1 RAKFKQLL effector memory T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-B*08:01 B2M MHCI -11241 chip0423_140395 10.27 7.07 Chip2 T1D_4 T1D _ 6746 5777 EBNA3A-158-166 EBV 0.4 444 NEG 49 5728 10 EBV EBNA3A QAKWRLQTL effector memory T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-B*08:01 B2M MHCI -11242 chip0423_3356 12.09 13.94 Chip2 T1D_6 T1D TGCATCCTCCCACTTGCTGGTGGTACTAGCTATGGAAAGCTGACATTT CILPLAGGTSYGKLTF TRAV26-2*01 TRAJ52*01 37.0 1762.0 TGTGCCAGCAAACCGGGACAGGGGGGCTACGAGCAGTACTTC CASKPGQGGYEQYF TRBV6-1*01 TRBJ2-7*01 9.0 229.0 CILPLAGGTSYGKLTF_CASKPGQGGYEQYF 1 1648 EBNA3A-193-201 EBV 0.55 1022 NEG 67 1581 11 EBV EBNA3A FLRGRAYGL effector T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-B*08:01 B2M MHCI -11243 chip0423_868210 15.59 10.47 Chip2 healthy_5 healthy _ 6746 1672 BZLF1-190-197 EBV 0.83 2156 NEG 44 1628 12 EBV BZLF1 RAKFKQLL effector T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-B*08:01 B2M MHCI -11244 chip0423_568337 11.26 6.47 Chip2 T1D_4 T1D TGTGCTGTCCCAGGAGGTTGCCTTGGGTTTCTCCTCTTT CAVPGGCLGFLLF TRAV8-3*01 TRAJ42*01 10.0 800.0 CAVPGGCLGFLLF_ 1 6668 EBV-LMP1-1 EBV 0.8 237 NEG 50 6618 6 EBV LMP1 YLLEMLWRL central memory T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*02:01 B2M MHCI -11245 chip0423_408400 -2.26 15.82 Chip2 T1D_6 T1D _ 6746 1556 MART1-ALA MART1 0.56 269 NEG 63 1493 1 HomoSapiens MART1 ALAGIGILTV Naive T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*02:01 B2M MHCI -11246 chip0423_581514 8.25 13.81 Chip2 healthy_3 healthy TGTGCAGCAAGTATGGGATATGGAAACAAACTGGTCTTT CAASMGYGNKLVF TRAV13-1*01 TRAJ47*01 43.0 1946.0 CAASMGYGNKLVF_ 4 3917 NP44-52 FLU 0.69 474 NP44-52 47 3870 11 InfluenzaA NP CTELKLSDY effector T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*01:01 B2M MHCI -11247 chip0423_591631 15.45 12.67 Chip2 healthy_3 healthy _ 6746 2106 GAD65-114-122 GAD65 0.74 63 NEG 62 2044 12 HomoSapiens GAD65 VMNILLQYV effector T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*02:01 B2M MHCI -11248 chip0423_791436 -2.14 15.93 Chip2 T1D_6 T1D TGTGCAGGGCCCGCCCTTAATGCTGGCAACACCCGTTCGCTGCTTTGG CAGPALNAGNTRSLLW TRAV25*01 TRAJ38*01 7.0 197.0 CAGPALNAGNTRSLLW_ 1 1273 HCVNS3-1073-1081 HCV 0.8 36 NEG 52 1221 1 HCV NS3 CINGVCWTV Naive T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*02:01 B2M MHCI -11249 chip0423_119421 -3.77 12.42 Chip2 healthy_5 healthy _ 6746 3305 Pol173-181 HIV 0.64 8 NEG 41 3264 1 HIV-1 Pol GPKVKQWPL Naive T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-B*08:01 B2M MHCI -11250 chip0423_143006 10.16 10.49 Chip2 healthy_4 healthy TGGGCCAGCACCTCCCCAGGGGTATTAGGGGGGGAAGCTTTCTTT WASTSPGVLGGEAFF TRBV7-8*01 TRBJ1-1*01 5.0 134.0 _WASTSPGVLGGEAFF 1 5732 BZLF1-190-197 EBV 0.75 2156 NEG 55 5677 9 EBV BZLF1 RAKFKQLL effector memory T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-B*08:01 B2M MHCI -11251 chip0423_804217 11.42 14.03 Chip2 T1D_4 T1D _ 6746 1159 EBV-LMP1-1 EBV 0.6 237 NEG 45 1114 11 EBV LMP1 YLLEMLWRL effector T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*02:01 B2M MHCI -11252 chip0423_309088 -1.44 8.77 Chip2 healthy_3 healthy TGTGCCCCTCAGAGGGGAAGCCAAGGAAATCTCATCTTT CAPQRGSQGNLIF TRAV12-2*01 TRAJ42*01 7.0 373.0 CAPQRGSQGNLIF_ 1 5317 MART1-ALA MART1 0.75 269 NEG 37 5280 4 HomoSapiens MART1 ALAGIGILTV Naive T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*02:01 B2M MHCI -11253 chip0423_688048 10.47 13.87 Chip2 healthy_3 healthy _ 6746 1615 M1 FLU 0.83 1250 NEG 46 1569 11 InfluenzaA M1 GILGFVFTL effector T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*02:01 B2M MHCI -11254 chip0423_234943 -2.48 14.91 Chip2 healthy_5 healthy TGTGCTGTGAGTGATGGAGAAGGAGCCCAGAAGCTGGTATTT CAVSDGEGAQKLVF TRAV8-6*01 TRAJ54*01 18.0 815.0 CAVSDGEGAQKLVF_ 12 2416 BZLF1-190-197 EBV 0.85 2156 NEG 44 2372 1 EBV BZLF1 RAKFKQLL Naive T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-B*08:01 B2M MHCI -11255 chip0423_692028 6.35 12.18 Chip2 T1D_4 T1D _ 6746 7527 EBV-LMP1-1 EBV 0.69 237 NEG 52 7475 7 EBV LMP1 YLLEMLWRL transitional T cells between effector and memory populations PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*02:01 B2M MHCI -11256 chip0423_479963 5.2 9.8 Chip2 T1D_4 T1D _ 6746 3966 EBNA3A-193-201 EBV 0.88 1022 NEG 47 3919 6 EBV EBNA3A FLRGRAYGL central memory T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-B*08:01 B2M MHCI -11257 chip0423_870442 10.69 13.52 Chip2 T1D_4 T1D _ 6746 2695 BZLF1-190-197 EBV 0.57 2156 NEG 53 2642 11 EBV BZLF1 RAKFKQLL effector T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-B*08:01 B2M MHCI -11258 chip0423_148566 12.98 8.61 Chip2 T1D_4 T1D _ 6746 2535 EBNA3A-158-166 EBV 0.6 444 EBNA3A-158-166 58 2477 10 EBV EBNA3A QAKWRLQTL effector memory T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-B*08:01 B2M MHCI -11259 chip0423_411877 -0.73 4.66 Chip2 T1D_6 T1D _ 6746 5377 G6PC2-FLH-8 IGRP 0.86 3 G6PC2-FLH-8 47 5330 5 HomoSapiens G6PC2 FLHRNGVL natural killer-like T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-B*08:01 B2M MHCI -11260 chip0423_538785 -3.62 11.07 Chip2 healthy_4 healthy TGTGCCAGCAGCCAATGGCGAGACAGGGGGCTTCACACCGGGGAGCTGTTTTTT CASSQWRDRGLHTGELFF TRBV3-1*01 TRBJ2-2*01 3.0 51.0 _CASSQWRDRGLHTGELFF 1 5063 IGRP-228-236 IGRP 0.86 16 IGRP-228-236 60 5003 1 HomoSapiens IGRP LNIDLLWSV Naive T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*02:01 B2M MHCI -11261 chip0423_226412 6.3 14.28 Chip2 healthy_3 healthy _ 6746 3895 NP44-52 FLU 0.68 474 NP44-52 61 3834 7 InfluenzaA NP CTELKLSDY transitional T cells between effector and memory populations PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*01:01 B2M MHCI -11262 chip0423_830981 9.47 13.85 Chip2 healthy_3 healthy _ 6746 3080 NP44-52 FLU 0.5 474 NP44-52 55 3025 11 InfluenzaA NP CTELKLSDY effector T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*01:01 B2M MHCI -11263 chip0423_532135 11.37 8.69 Chip2 T1D_4 T1D _ 6746 4417 EBV-LMP1-1 EBV 0.8 237 NEG 58 4359 10 EBV LMP1 YLLEMLWRL effector memory T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*02:01 B2M MHCI -11264 chip0423_352961 5.02 9.66 Chip2 T1D_4 T1D TGCGCCAGCAGCCAAGAAGTCACAGATACGCAGTATTTT CASSQEVTDTQYF TRBV4-3*01 TRBJ2-3*01 26.0 880.0 _CASSQEVTDTQYF 5 2687 EBV-LMP1-1 EBV 0.67 237 NEG 44 2643 6 EBV LMP1 YLLEMLWRL central memory T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*02:01 B2M MHCI -11265 chip0423_137532 5.4 9.17 Chip2 T1D_4 T1D _ 6746 6187 EBV-LMP2-FLY EBV 0.73 355 NEG 48 6139 6 EBV LMP2 FLYALALLL central memory T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*02:01 B2M MHCI -11266 chip0423_470644 14.19 8.28 Chip2 T1D_4 T1D _ 6746 3325 EBNA3A-158-166 EBV 0.65 444 NEG 53 3272 10 EBV EBNA3A QAKWRLQTL effector memory T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-B*08:01 B2M MHCI -11267 chip0423_34386 10.27 10.34 Chip2 healthy_4 healthy TGTGCAGCAAGTGAAACCTCCTACGACAAGGTGATATTT CAASETSYDKVIF TRAV13-1*01 TRAJ50*01 23.0 1592.0 TGTGCCAGCAGCACGACCCGCGCAGGGACTTGGCCCCTCCACTTT CASSTTRAGTWPLHF TRBV7-9*01 TRBJ1-6*01 3.0 130.0 CAASETSYDKVIF_CASSTTRAGTWPLHF 10 4304 BZLF1-190-197 EBV 0.8 2156 NEG 52 4252 9 EBV BZLF1 RAKFKQLL effector memory T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-B*08:01 B2M MHCI -11268 chip0423_94096 8.25 13.92 Chip2 healthy_3 healthy TGTGCTGTGGGTTCTCCTAATTTTGGGGGCCGCGAGGGTTTTGTCATCTTT CAVGSPNFGGREGFVIF TRAV36/DV7*01 TRAJ42*01 8.0 311.0 TGTGCCAGCTCTCCATCCTCTCTCGACGCGCATTTTCCCCTCTATAATTCACCCCTCCACTTT CASSPSSLDAHFPLYNSPLHF TRBV28*01 TRBJ1-6*01 4.0 102.0 CAVGSPNFGGREGFVIF_CASSPSSLDAHFPLYNSPLHF 1 3031 NP44-52 FLU 1.0 474 NP44-52 64 2967 11 InfluenzaA NP CTELKLSDY effector T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*01:01 B2M MHCI -11269 chip0423_245705 15.2 9.98 Chip2 healthy_5 healthy _ 6746 3484 LMP2A-CPL EBV 0.91 44 NEG 52 3432 12 EBV LMP2A CPLSKILL effector T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-B*08:01 B2M MHCI -11270 chip0423_430911 11.53 6.7 Chip2 T1D_4 T1D _ 6746 5462 EBNA3A-193-201 EBV 0.79 1022 EBNA3A-193-201 44 5418 10 EBV EBNA3A FLRGRAYGL effector memory T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-B*08:01 B2M MHCI -11271 chip0423_257360 11.17 14.05 Chip2 healthy_3 healthy _ 6746 1043 NP44-52 FLU 0.8 474 NEG 47 996 11 InfluenzaA NP CTELKLSDY effector T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*01:01 B2M MHCI -11272 chip0423_589549 11.93 13.67 Chip2 T1D_5 T1D _ 6746 1454 BZLF1-190-197 EBV 0.8 2156 NEG 48 1406 11 EBV BZLF1 RAKFKQLL effector T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-B*08:01 B2M MHCI -11273 chip0423_178837 5.39 9.98 Chip2 healthy_3 healthy _ 6746 3523 NP44-52 FLU 0.96 474 NP44-52 36 3487 6 InfluenzaA NP CTELKLSDY central memory T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*01:01 B2M MHCI -11274 chip0423_246243 6.7 11.93 Chip2 healthy_3 healthy TGTGCCAGCTCATTAAGTCCAGCGGGAGATTACAATGAGCAGTTCTTC CASSLSPAGDYNEQFF TRBV18*01 TRBJ2-1*01 18.0 748.0 _CASSLSPAGDYNEQFF 1 6124 NP44-52 FLU 0.93 474 NEG 55 6069 7 InfluenzaA NP CTELKLSDY transitional T cells between effector and memory populations PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*01:01 B2M MHCI -11275 chip0423_289101 11.75 13.17 Chip2 T1D_5 T1D _ 6746 1824 BZLF1-190-197 EBV 0.78 2156 NEG 33 1791 11 EBV BZLF1 RAKFKQLL effector T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-B*08:01 B2M MHCI -11276 chip0423_58133 -4.01 13.06 Chip2 healthy_4 healthy TGTACAATGAGCGTCTCTAACTTTGGAAATGAGAAATTAACCTTT CTMSVSNFGNEKLTF TRAV12-3*01 TRAJ48*01 1.0 26.0 TGCGCCAGCAACAGGGGAATAACCGGGGAGCTGTTTTTT CASNRGITGELFF TRBV5-1*01 TRBJ2-2*01 50.0 2599.0 CTMSVSNFGNEKLTF_CASNRGITGELFF 1 3334 PGT-178 PGT 0.5 1480 NEG 40 3294 1 HomoSapiens PGT LLAGIGTVPI Naive T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*02:01 B2M MHCI -11277 chip0423_211380 12.46 13.5 Chip2 T1D_5 T1D _ 6746 1902 BZLF1-190-197 EBV 1.0 2156 NEG 43 1859 11 EBV BZLF1 RAKFKQLL effector T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-B*08:01 B2M MHCI -11278 chip0423_170226 4.88 10.82 Chip2 T1D_4 T1D _ 6746 5143 EBV-LMP1-1 EBV 0.78 237 NEG 36 5107 6 EBV LMP1 YLLEMLWRL central memory T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*02:01 B2M MHCI -11279 chip0423_648897 7.83 13.19 Chip2 healthy_3 healthy TGTGCCAGTAGTCCACTCCTAGCGACCCAAGGCTACGAGCAGTACTTC CASSPLLATQGYEQYF TRBV19*01 TRBJ2-7*01 18.0 809.0 _CASSPLLATQGYEQYF 3 4184 NP44-52 FLU 0.5 474 NP44-52 37 4147 7 InfluenzaA NP CTELKLSDY transitional T cells between effector and memory populations PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*01:01 B2M MHCI -11280 chip0423_641199 -4.79 9.33 Chip2 healthy_3 healthy TGCGCCAGCAGCTGGGGGAGCTACAATGAGCAGTTCTTC CASSWGSYNEQFF TRBV5-1*01 TRBJ2-1*01 17.0 1286.0 _CASSWGSYNEQFF 1 5033 PGT-178 PGT 0.65 1480 PGT-178 51 4982 2 HomoSapiens PGT LLAGIGTVPI Naive T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*02:01 B2M MHCI -11281 chip0423_99365 15.86 11.52 Chip2 healthy_3 healthy _ 6746 2509 NP44-52 FLU 0.54 474 NP44-52 47 2462 12 InfluenzaA NP CTELKLSDY effector T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*01:01 B2M MHCI -11282 chip0423_83702 12.66 6.45 Chip2 T1D_5 T1D TGTGCCAGCAGTTTTACAGGTAGCTCTGGAAACACCATATATTTT CASSFTGSSGNTIYF TRBV12-3*01,TRBV12-4*01 TRBJ1-3*01 51.0 2226.0 _CASSFTGSSGNTIYF 7 3744 BZLF1-190-197 EBV 0.68 2156 BZLF1-190-197 33 3711 10 EBV BZLF1 RAKFKQLL effector memory T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-B*08:01 B2M MHCI -11283 chip0423_643332 11.65 13.84 Chip2 healthy_3 healthy _ 6746 2521 NP44-52 FLU 0.71 474 NEG 41 2480 11 InfluenzaA NP CTELKLSDY effector T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*01:01 B2M MHCI -11284 chip0423_660160 -4.22 10.91 Chip2 healthy_3 healthy _ 6746 4516 PGT-178 PGT 0.95 1480 PGT-178 40 4476 2 HomoSapiens PGT LLAGIGTVPI Naive T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*02:01 B2M MHCI -11285 chip0423_843519 7.37 9.97 Chip2 healthy_3 healthy _ 6746 6682 PTPRN-482-490 PTPRN 0.68 10 PTPRN-482-490 37 6645 7 HomoSapiens PTPRN SLAAGVKLL transitional T cells between effector and memory populations PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*02:01 B2M MHCI -11286 chip0423_61254 7.28 12.89 Chip2 healthy_3 healthy TGTGCTGTTCTCCCCTCTAACGACTACACGCTCAGCTTT CAVLPSNDYTLSF TRAV21*01,TRAV12-3*01 TRAJ20*01 31.0 1620.0 CAVLPSNDYTLSF_ 1 3556 NP44-52 FLU 1.0 474 NP44-52 40 3516 7 InfluenzaA NP CTELKLSDY transitional T cells between effector and memory populations PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*01:01 B2M MHCI -11287 chip0423_295499 13.57 8.04 Chip2 T1D_4 T1D TGTGCTGTCAATTCAGGAAACACACCTCTTGTCTTT CAVNSGNTPLVF TRAV1-2*01 TRAJ29*01 22.0 2003.0 TGTGCCAGCAGCTTGGGACAGGCCTACGAGCAGTACTTC CASSLGQAYEQYF TRBV7-8*01 TRBJ2-7*01 1.0 18.0 CAVNSGNTPLVF_CASSLGQAYEQYF 1 2555 EBNA3A-158-166 EBV 0.81 444 NEG 54 2501 10 EBV EBNA3A QAKWRLQTL effector memory T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-B*08:01 B2M MHCI -11288 chip0423_620788 6.02 12.7 Chip2 healthy_3 healthy _ 6746 6129 M1 FLU 0.57 1250 NEG 40 6089 7 InfluenzaA M1 GILGFVFTL transitional T cells between effector and memory populations PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*02:01 B2M MHCI -11289 chip0423_371262 8.34 11.88 Chip2 healthy_3 healthy TGCAGCGTTGAATGGGCCTTTGACTACACCTTC CSVEWAFDYTF TRBV29-1*01 TRBJ1-2*01 4.0 338.0 _CSVEWAFDYTF 1 4957 PB1-590-599 FLU 0.61 37 NEG 36 4921 7 InfluenzaA PB1 LVSDGGPNLY transitional T cells between effector and memory populations PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*01:01 B2M MHCI -11290 chip0423_808553 -3.33 13.74 Chip2 healthy_5 healthy TGTGCCAGCAGGGGCGAAGCATTTGGGAGGACCGGGGAGCTGTTTTTT CASRGEAFGRTGELFF TRBV12-3*01,TRBV12-4*01 TRBJ2-2*01 2.0 55.0 _CASRGEAFGRTGELFF 1 3113 PB1-590-599 FLU 0.67 37 NEG 36 3077 1 InfluenzaA PB1 LVSDGGPNLY Naive T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*01:01 B2M MHCI -11291 chip0423_712138 12.45 13.23 Chip2 T1D_5 T1D _ 6746 1854 BZLF1-190-197 EBV 1.0 2156 NEG 50 1804 11 EBV BZLF1 RAKFKQLL effector T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-B*08:01 B2M MHCI -11292 chip0423_723147 7.69 14.18 Chip2 healthy_3 healthy _ 6746 2911 NP44-52 FLU 0.84 474 NP44-52 36 2875 7 InfluenzaA NP CTELKLSDY transitional T cells between effector and memory populations PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*01:01 B2M MHCI -11293 chip0423_532165 11.65 6.39 Chip2 T1D_4 T1D _ 6746 5115 BZLF1-190-197 EBV 0.86 2156 NEG 38 5077 10 EBV BZLF1 RAKFKQLL effector memory T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-B*08:01 B2M MHCI -11294 chip0423_860885 5.57 9.92 Chip2 T1D_4 T1D _ 6746 4718 EBV-LMP2A EBV 0.71 700 NEG 41 4677 6 EBV LMP2A CLGGLLTMV central memory T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*02:01 B2M MHCI -11295 chip0423_1515 -3.4 9.26 Chip2 T1D_6 T1D TGTGCCAGCAGCCAAGTTCAGGGGGGCCCTGAAGCTTTCTTT CASSQVQGGPEAFF TRBV14*01 TRBJ1-1*01 4.0 172.0 _CASSQVQGGPEAFF 1 4505 NP140-148 FLU 0.87 102 NEG 50 4455 2 InfluenzaA NP HSNLNDATY Naive T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*01:01 B2M MHCI -11296 chip0423_699907 14.43 10.03 Chip2 T1D_6 T1D _ 6746 4442 EBV-BLMF1 EBV 0.5 2531 NEG 39 4403 12 EBV BLMF1 GLCTLVAML effector T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*02:01 B2M MHCI -11297 chip0423_715869 -4.15 9.27 Chip2 healthy_4 healthy _ 6746 5137 HCVNS4B-1807-1816 HCV 1.0 74 NEG 38 5099 2 HCV NS4B LLFNILGGWV Naive T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*02:01 B2M MHCI -11298 chip0423_256575 -2.61 15.08 Chip2 T1D_6 T1D TGTGCCAGTAGTATGTTCATGATCTCTGGAAACACCATATATTTT CASSMFMISGNTIYF TRBV19*01 TRBJ1-3*01 23.0 434.0 _CASSMFMISGNTIYF 1 2459 M1 FLU 0.44 1250 NEG 41 2418 1 InfluenzaA M1 GILGFVFTL Naive T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*02:01 B2M MHCI -11299 chip0423_348718 9.46 13.05 Chip2 healthy_3 healthy TGCGCCAGCAGTGAACCTGGGCGTGTAGATACGCAGTATTTT CASSEPGRVDTQYF TRBV10-2*01 TRBJ2-3*01 12.0 520.0 _CASSEPGRVDTQYF 2 2848 ZNT8-107-115 ZNT8 0.91 10 NEG 35 2813 6 HomoSapiens ZNT8 LLIDLTSFL central memory T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*02:01 B2M MHCI -11300 chip0423_726301 -3.66 7.82 Chip2 healthy_3 healthy _ 6746 6723 POL-334-342 HIV 0.64 12 NEG 40 6683 2 HIV-1 POL VIYQYMDDL Naive T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*02:01 B2M MHCI -11301 chip0423_728980 10.9 7.79 Chip2 T1D_4 T1D _ 6746 5280 EBV-LMP1-1 EBV 0.81 237 NEG 28 5252 6 EBV LMP1 YLLEMLWRL central memory T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*02:01 B2M MHCI -11302 chip0423_206256 12.05 7.56 Chip2 T1D_4 T1D _ 6746 3498 EBNA3A-193-201 EBV 0.55 1022 NEG 41 3457 10 EBV EBNA3A FLRGRAYGL effector memory T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-B*08:01 B2M MHCI -11303 chip0423_557533 -2.55 15.01 Chip2 healthy_3 healthy TGCAGTGCCATCCCGGCGAATTTCAGCTCCTACAATGAGCAGTTCTTC CSAIPANFSSYNEQFF TRBV20-1*01 TRBJ2-1*01 24.0 1431.0 _CSAIPANFSSYNEQFF 1 2704 PGT-178 PGT 0.82 1480 NEG 32 2672 1 HomoSapiens PGT LLAGIGTVPI Naive T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*02:01 B2M MHCI -11304 chip0423_743891 -4.33 8.34 Chip2 healthy_3 healthy _ 6746 5588 INS-6-16 INS 0.79 20 NEG 34 5554 2 HomoSapiens INS RLLPLLALLAL Naive T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*02:01 B2M MHCI -11305 chip0423_852775 10.79 13.26 Chip2 healthy_3 healthy _ 6746 3351 M1 FLU 0.76 1250 M1 40 3311 11 InfluenzaA M1 GILGFVFTL effector T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*02:01 B2M MHCI -11306 chip0423_641545 11.69 13.76 Chip2 T1D_5 T1D _ 6746 2192 BZLF1-190-197 EBV 0.75 2156 NEG 42 2150 11 EBV BZLF1 RAKFKQLL effector T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-B*08:01 B2M MHCI -11307 chip0423_829017 -0.86 8.75 Chip2 T1D_6 T1D _ 6746 6204 PGT-178 PGT 0.9 1480 PGT-178 31 6173 4 HomoSapiens PGT LLAGIGTVPI Naive T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*02:01 B2M MHCI -11308 chip0423_416337 6.14 10.01 Chip2 healthy_4 healthy TGCGCCAGCAGCTCGGACGGCATGAACACTGAAGCTTTCTTT CASSSDGMNTEAFF TRBV10-2*01 TRBJ1-1*01 16.0 852.0 _CASSSDGMNTEAFF 10 5203 EBV-LMP2A EBV 0.93 700 EBV-LMP2A 44 5159 6 EBV LMP2A CLGGLLTMV central memory T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*02:01 B2M MHCI -11309 chip0423_574308 10.9 7.24 Chip2 T1D_4 T1D _ 6746 4120 BZLF1-190-197 EBV 0.97 2156 BZLF1-190-197 30 4090 10 EBV BZLF1 RAKFKQLL effector memory T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-B*08:01 B2M MHCI -11310 chip0423_154515 6.45 12.48 Chip2 healthy_3 healthy _ 6746 5523 NP44-52 FLU 0.74 474 NEG 45 5478 7 InfluenzaA NP CTELKLSDY transitional T cells between effector and memory populations PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*01:01 B2M MHCI -11311 chip0423_841646 11.91 7.6 Chip2 T1D_5 T1D _ 6746 3484 BZLF1-190-197 EBV 0.9 2156 NEG 31 3453 10 EBV BZLF1 RAKFKQLL effector memory T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-B*08:01 B2M MHCI -11312 chip0423_553439 6.13 10.0 Chip2 healthy_4 healthy _ 6746 3884 EBNA3A-193-201 EBV 1.0 1022 NEG 35 3849 6 EBV EBNA3A FLRGRAYGL central memory T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-B*08:01 B2M MHCI -11313 chip0423_593151 8.63 11.85 Chip2 T1D_5 T1D _ 6746 4339 BZLF1-190-197 EBV 0.44 2156 NEG 40 4299 7 EBV BZLF1 RAKFKQLL transitional T cells between effector and memory populations PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-B*08:01 B2M MHCI -11314 chip0423_537563 -1.79 7.44 Chip2 healthy_3 healthy TGTGCCAGCAGTTACGGGGTTCGCGGGCCCACTGCAGCTTTCTTT CASSYGVRGPTAAFF TRBV6-5*01 TRBJ1-1*01 3.0 101.0 _CASSYGVRGPTAAFF 1 5258 ZNT8-VTD-9 ZNT8 0.58 65 ZNT8-VTD-9 33 5225 4 HomoSapiens ZNT8 VTDAAHLLI Naive T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*01:01 B2M MHCI -11315 chip0423_94706 11.91 13.84 Chip2 T1D_4 T1D _ 6746 973 BZLF1-190-197 EBV 0.5 2156 NEG 33 940 11 EBV BZLF1 RAKFKQLL effector T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-B*08:01 B2M MHCI -11316 chip0423_694064 -2.83 8.9 Chip2 healthy_3 healthy TGTGCAATGAGCGCATCTAACTTTGGAAATGAGAAATTAACCTTT CAMSASNFGNEKLTF TRAV12-3*01 TRAJ48*01 49.0 1985.0 TGTGCCAGCAGCCAAGGGGTACCGGGGACTGAAGCTTTCTTT CASSQGVPGTEAFF TRBV14*01 TRBJ1-1*01 15.0 450.0 CAMSASNFGNEKLTF_CASSQGVPGTEAFF 1 7815 PGT-178 PGT 0.6 1480 PGT-178 32 7783 2 HomoSapiens PGT LLAGIGTVPI Naive T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*02:01 B2M MHCI -11317 chip0423_164066 11.38 14.06 Chip2 T1D_6 T1D _ 6746 825 EBNA3A-193-201 EBV 0.8 1022 NEG 42 783 11 EBV EBNA3A FLRGRAYGL effector T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-B*08:01 B2M MHCI -11318 chip0423_553443 -1.35 8.3 Chip2 healthy_5 healthy _ 6746 5535 GAD2-CLE-9 GAD65 0.64 4 NEG 37 5498 3 HomoSapiens GAD2 CLELAEYLY Naive T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*01:01 B2M MHCI -11319 chip0423_495552 -2.9 14.36 Chip2 healthy_3 healthy TGTGCCACGGGGAGGGGGGGTAGCGGGAAAGTTACCTTT CATGRGGSGKVTF TRAV12-2*01 TRAJ13*01 3.0 231.0 CATGRGGSGKVTF_ 1 3495 PGT-178 PGT 0.73 1480 NEG 22 3473 1 HomoSapiens PGT LLAGIGTVPI Naive T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*02:01 B2M MHCI -11320 chip0423_24401 -3.6 13.88 Chip2 healthy_3 healthy _ 6746 2898 GAD2-VSA-10 GAD65 0.8 21 NEG 32 2866 1 HomoSapiens GAD2 VSATAGTTVY Naive T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*01:01 B2M MHCI -11321 chip0423_693651 -3.78 13.17 Chip2 healthy_3 healthy _ 6746 3677 ZNT8-VTD-9 ZNT8 0.93 65 ZNT8-VTD-9 30 3647 1 HomoSapiens ZNT8 VTDAAHLLI Naive T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*01:01 B2M MHCI -11322 chip0423_671763 11.73 12.78 Chip2 healthy_4 healthy _ 6746 2036 BZLF1-190-197 EBV 0.67 2156 NEG 34 2002 11 EBV BZLF1 RAKFKQLL effector T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-B*08:01 B2M MHCI -11323 chip0423_170821 11.65 13.23 Chip2 T1D_4 T1D TGTGCTGTGAGTGATGGAGAAGGAGCCCAGAAGCTGGTATTT CAVSDGEGAQKLVF TRAV8-6*01 TRAJ54*01 2.0 40.0 CAVSDGEGAQKLVF_ 12 2375 BZLF1-190-197 EBV 0.93 2156 NEG 28 2347 11 EBV BZLF1 RAKFKQLL effector T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-B*08:01 B2M MHCI -11324 chip0423_203213 6.14 13.21 Chip2 T1D_6 T1D _ 6746 3396 M1 FLU 0.93 1250 NEG 31 3365 7 InfluenzaA M1 GILGFVFTL transitional T cells between effector and memory populations PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*02:01 B2M MHCI -11325 chip0423_352515 1.0 8.56 Chip2 healthy_4 healthy TGTGCCAGCAGCCGAGCGGGGCCGGGCAATCAGCCCCAGCATTTT CASSRAGPGNQPQHF TRBV7-9*01 TRBJ1-5*01 15.0 683.0 _CASSRAGPGNQPQHF 1 5667 BZLF1-190-197 EBV 0.95 2156 BZLF1-190-197 30 5637 4 EBV BZLF1 RAKFKQLL Naive T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-B*08:01 B2M MHCI -11326 chip0423_167769 10.7 6.83 Chip2 T1D_4 T1D _ 6746 4599 EBNA3A-158-166 EBV 0.88 444 NEG 27 4572 10 EBV EBNA3A QAKWRLQTL effector memory T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-B*08:01 B2M MHCI -11327 chip0423_480020 -3.72 12.32 Chip2 T1D_6 T1D _ 6746 4229 INS-LWM-8 INS 0.59 11 INS-LWM-8 29 4200 1 HomoSapiens INS LWMRLLPL Naive T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-B*08:01 B2M MHCI -11328 chip0423_768236 7.68 13.02 Chip2 healthy_3 healthy TGTGCTCCAGTACCGGGTTAATAGGAAACTGACATTT CAPVPG??tNRKLTF TRAV41*01 TRAJ56*01 1.0 13.0 TGCGCCAGCAGCCAAGATGGGTACGGGGGGGATCAGCCCCAGCATTTT CASSQDGYGGDQPQHF TRBV4-1*01 TRBJ1-5*01 17.0 502.0 CAPVPG??tNRKLTF_CASSQDGYGGDQPQHF 2 3114 NP44-52 FLU 0.55 474 NP44-52 30 3084 7 InfluenzaA NP CTELKLSDY transitional T cells between effector and memory populations PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*01:01 B2M MHCI -11329 chip0423_283087 11.8 8.64 Chip2 healthy_4 healthy _ 6746 3353 BZLF1-190-197 EBV 0.83 2156 NEG 27 3326 10 EBV BZLF1 RAKFKQLL effector memory T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-B*08:01 B2M MHCI -11330 chip0423_458826 7.0 10.74 Chip2 healthy_3 healthy _ 6746 6261 NP44-52 FLU 0.9 474 NP44-52 43 6218 7 InfluenzaA NP CTELKLSDY transitional T cells between effector and memory populations PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*01:01 B2M MHCI -11331 chip0423_627467 5.65 8.84 Chip2 T1D_4 T1D _ 6746 5978 EBV-LMP1-1 EBV 0.48 237 NEG 28 5950 6 EBV LMP1 YLLEMLWRL central memory T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*02:01 B2M MHCI -11332 chip0423_255637 5.39 9.18 Chip2 healthy_3 healthy _ 6746 4132 POL-132-140 HIV 0.71 37 NEG 39 4093 6 HIV-1 POL LVGPTPVNI central memory T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*02:01 B2M MHCI -11333 chip0423_374835 12.04 12.77 Chip2 healthy_4 healthy TGCAGTGCTAGTGAACAGGGACTAGCGGGAGGCACTTTCTACGAGCAGTACTTC CSASEQGLAGGTFYEQYF TRBV20-1*01 TRBJ2-7*01 3.0 46.0 _CSASEQGLAGGTFYEQYF 1 1979 BZLF1-190-197 EBV 0.82 2156 NEG 21 1958 11 EBV BZLF1 RAKFKQLL effector T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-B*08:01 B2M MHCI -11334 chip0423_449411 10.48 10.14 Chip2 healthy_4 healthy _ 6746 2192 BZLF1-190-197 EBV 0.78 2156 NEG 39 2153 9 EBV BZLF1 RAKFKQLL effector memory T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-B*08:01 B2M MHCI -11335 chip0423_120002 -3.93 12.8 Chip2 healthy_3 healthy TGTGCCAGCAGTGAACTGGTAAATGAGCAGTTCTTC CASSELVNEQFF TRBV2*01 TRBJ2-1*01 7.0 606.0 _CASSELVNEQFF 1 3490 PGT-178 PGT 0.73 1480 NEG 25 3465 1 HomoSapiens PGT LLAGIGTVPI Naive T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*02:01 B2M MHCI -11336 chip0423_511248 9.61 8.92 Chip2 healthy_3 healthy _ 6746 3945 GAD65-114-122 GAD65 0.59 63 GAD65-114-122 24 3921 8 HomoSapiens GAD65 VMNILLQYV effector memory T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*02:01 B2M MHCI -11337 chip0423_85023 9.49 10.71 Chip2 healthy_3 healthy TGCGCTGTGAGAGAAAACACCAATGCAGGCAAATCAACCTTT CAVRENTNAGKSTF TRAV1-1*01 TRAJ27*01 34.0 1200.0 TGTGCCAGCAGTTATTCGTCGGCGGGAGGGAACGAGCAGTACTTC CASSYSSAGGNEQYF TRBV6-5*01 TRBJ2-7*01 18.0 561.0 CAVRENTNAGKSTF_CASSYSSAGGNEQYF 1 5705 PGT-178 PGT 0.89 1480 NEG 33 5672 9 HomoSapiens PGT LLAGIGTVPI effector memory T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*02:01 B2M MHCI -11338 chip0423_718599 -3.38 13.59 Chip2 T1D_4 T1D TGTGCCAGCAGTTACGGGCCCGACGAGCAGTACTTC CASSYGPDEQYF TRBV6-2*01,TRBV6-3*01 TRBJ2-7*01 13.0 901.0 _CASSYGPDEQYF 1 3229 EBV-BRLF1 EBV 0.5 1264 NEG 29 3200 1 EBV BRLF1 YVLDHLIVV Naive T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*02:01 B2M MHCI -11339 chip0423_629934 11.8 13.72 Chip2 healthy_4 healthy _ 6746 1260 BZLF1-190-197 EBV 1.0 2156 NEG 30 1230 11 EBV BZLF1 RAKFKQLL effector T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-B*08:01 B2M MHCI -11340 chip0423_25198 12.5 12.98 Chip2 healthy_3 healthy _ 6746 2927 M1 FLU 0.83 1250 NEG 24 2903 11 InfluenzaA M1 GILGFVFTL effector T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*02:01 B2M MHCI -11341 chip0423_187981 -2.28 15.72 Chip2 T1D_5 T1D TGCAGCGTTGAAGGGTGGGCAGGGGGCTCCTACGAGCAGTACTCC CSVEGWAGGSYEQYS TRBV29-1*01 TRBJ2-7*01 9.0 1024.0 _CSVEGWAGGSYEQYS 1 915 GAD2-HPR-8 GAD65 0.9 9 NEG 26 889 1 HomoSapiens GAD2 HPRYFNQL Naive T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-B*08:01 B2M MHCI -11342 chip0423_536472 7.26 13.48 Chip2 healthy_3 healthy TGTGCTCCCGAAGTACACAAACTGGTCTTT CAPEVHKLVF TRAV16*01 TRAJ47*01 15.0 2058.0 TGTGCCAGTAGTACTAGATCGGCGAATGAGCAGTTCTTC CASSTRSANEQFF TRBV19*01 TRBJ2-1*01 9.0 627.0 CAPEVHKLVF_CASSTRSANEQFF 1 4001 M1 FLU 0.9 1250 NEG 28 3973 7 InfluenzaA M1 GILGFVFTL transitional T cells between effector and memory populations PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*02:01 B2M MHCI -11343 chip0423_575304 8.86 13.98 Chip2 healthy_3 healthy _ 6746 2195 NP44-52 FLU 0.86 474 NEG 30 2165 11 InfluenzaA NP CTELKLSDY effector T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*01:01 B2M MHCI -11344 chip0423_73419 11.65 7.23 Chip2 T1D_5 T1D _ 6746 2878 BZLF1-190-197 EBV 0.55 2156 NEG 31 2847 10 EBV BZLF1 RAKFKQLL effector memory T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-B*08:01 B2M MHCI -11345 chip0423_626052 11.72 7.91 Chip2 healthy_5 healthy _ 6746 3318 BZLF1-190-197 EBV 0.88 2156 NEG 23 3295 10 EBV BZLF1 RAKFKQLL effector memory T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-B*08:01 B2M MHCI -11346 chip0423_414644 11.17 7.4 Chip2 T1D_6 T1D TGCAGCGCCGGCAGGGACGGGACTAATGAAAAACTGTTTTTT CSAGRDGTNEKLFF TRBV29-1*01 TRBJ1-4*01 15.0 1069.0 _CSAGRDGTNEKLFF 159 4768 EBV-BLMF1 EBV 1.0 2531 NEG 26 4742 10 EBV BLMF1 GLCTLVAML effector memory T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*02:01 B2M MHCI -11347 chip0423_859410 7.16 12.38 Chip2 healthy_3 healthy TGCATCGTCAGAGTCGTAGGGACCAGTTCTCTTTT CIVRVgt?RDQFSF TRAV26-1*01 TRAJ49*01 2.0 86.0 CIVRVgt?RDQFSF_ 1 5549 NP44-52 FLU 0.72 474 NP44-52 28 5521 7 InfluenzaA NP CTELKLSDY transitional T cells between effector and memory populations PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*01:01 B2M MHCI -11348 chip0423_62098 9.52 13.1 Chip2 healthy_3 healthy _ 6746 3172 NP140-148 FLU 0.67 102 NEG 26 3146 6 InfluenzaA NP HSNLNDATY central memory T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*01:01 B2M MHCI -11349 chip0423_286397 11.14 7.2 Chip2 T1D_6 T1D _ 6746 5731 EBNA3A-193-201 EBV 0.96 1022 EBNA3A-193-201 26 5705 6 EBV EBNA3A FLRGRAYGL central memory T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-B*08:01 B2M MHCI -11350 chip0423_108655 11.53 7.19 Chip2 healthy_3 healthy _ 6746 3803 MART1-ALA MART1 0.53 269 NEG 23 3780 6 HomoSapiens MART1 ALAGIGILTV central memory T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*02:01 B2M MHCI -11351 chip0423_537443 11.79 13.14 Chip2 healthy_3 healthy _ 6746 1745 GP160-311-320 HIV 0.65 109 GP160-311-320 23 1722 11 HIV-1 GP160 RGPGRAFVTI effector T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*02:01 B2M MHCI -11352 chip0514_507692 12.17 6.04 Chip3 T1D_7 T1D TGTGCTACGGAGGGGGATTCAGGATACAGCACCCTCACCTTT CATEGDSGYSTLTF TRAV17*01 TRAJ11*01 73.0 3016.0 TGTGCCAGCAGTCGACAGGGAGGATCTAACTATGGCTACACCTTC CASSRQGGSNYGYTF TRBV6-1*01 TRBJ1-2*01 24.0 684.0 CATEGDSGYSTLTF_CASSRQGGSNYGYTF 1 10770 EBV-LMP2-FLY EBV 0.95 355 EBV-LMP2-FLY 773 9997 6 EBV LMP2 FLYALALLL central memory T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*02:01 B2M MHCI -11353 chip0514_598817 12.94 6.2 Chip3 T1D_8 T1D TGTGCTACGGTGGGGAATTCAGGATACAGCACCCTCACCTTT CATVGNSGYSTLTF TRAV17*01 TRAJ11*01 73.0 2998.0 TGTGCCAGCAGCTTACAGGGTGGGAACATTCAGTACTTC CASSLQGGNIQYF TRBV6-1*01 TRBJ2-4*01 36.0 1182.0 CATVGNSGYSTLTF_CASSLQGGNIQYF 1 8264 EBV-LMP2-FLY EBV 1.0 355 NEG 758 7506 10 EBV LMP2 FLYALALLL effector memory T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*02:01 B2M MHCI -11354 chip0514_732312 8.01 8.41 Chip3 tet_neg TGTGCTGTGCTAATGGATAGCAACTATCAGTTAATCTGG CAVLMDSNYQLIW TRAV21*01 TRAJ33*01 44.0 2617.0 TGTGCCAGCAGCCCCGGAAACGTCTACGAGCAGTACTTC CASSPGNVYEQYF TRBV7-9*01 TRBJ2-7*01 30.0 1636.0 CAVLMDSNYQLIW_CASSPGNVYEQYF 1 15745 EBV-LMP2A EBV 0.92 700 EBV-LMP2A 542 15203 8 EBV LMP2A CLGGLLTMV effector memory T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*02:01 B2M MHCI -11355 chip0514_37079 12.85 6.16 Chip3 T1D_8 T1D TGTGCAATGAGAGAGGGAGGGAACTTCAACAAATTTTACTTT CAMREGGNFNKFYF TRAV14/DV4*01 TRAJ21*01 49.0 2150.0 TGCAGCGTTGTTGTGCCCCCTAATCAGCCCCAGCATTTT CSVVVPPNQPQHF TRBV29-1*01 TRBJ1-5*01 163.0 10345.0 CAMREGGNFNKFYF_CSVVVPPNQPQHF 1 6576 EBV-BRLF1 EBV 0.96 1264 EBV-BRLF1 561 6015 10 EBV BRLF1 YVLDHLIVV effector memory T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*02:01 B2M MHCI -11356 chip0514_580575 12.14 6.03 Chip3 T1D_8 T1D TGTGCCGTGAACATGGGCGGGGGTTACCAGAAAGTTACCTTT CAVNMGGGYQKVTF TRAV12-2*01 TRAJ13*01 112.0 4110.0 TGTGCCAGCAGTTACACGAGCGGGGCCACAGATACGCAGTATTTT CASSYTSGATDTQYF TRBV6-5*01 TRBJ2-3*01 130.0 3477.0 CAVNMGGGYQKVTF_CASSYTSGATDTQYF 1 7349 ROTA-VP3 ROTA 0.9 41 ROTA-VP3 595 6754 6 RotavirusA VP3 YLLPGWKL central memory T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*02:01 B2M MHCI -11357 chip0514_120984 8.3 7.87 Chip3 T1D_7 T1D TGTGCTCTGAGTGACGCTTACAACTTCAACAAATTTTACTTT CALSDAYNFNKFYF TRAV19*01 TRAJ21*01 20.0 918.0 TGTGCCAGCAGCTTTTCTTTTGGACAGGGGGCAAATGAGCAGTTCTTC CASSFSFGQGANEQFF TRBV7-6*01 TRBJ2-1*01 25.0 1178.0 CALSDAYNFNKFYF_CASSFSFGQGANEQFF 1 16042 EBV-LMP2-FLY EBV 0.83 355 EBV-LMP2-FLY 422 15620 8 EBV LMP2 FLYALALLL effector memory T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*02:01 B2M MHCI -11358 chip0514_618459 8.19 8.0 Chip3 T1D_7 T1D TGTGCCACCAGTTCATGGACTGAAAACCCAGATACGCAGTATTTT CATSSWTENPDTQYF TRBV24-1*01 TRBJ2-3*01 35.0 1091.0 _CATSSWTENPDTQYF 1 18365 EBV-BRLF1 EBV 0.73 1264 EBV-BRLF1 413 17952 8 EBV BRLF1 YVLDHLIVV effector memory T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*02:01 B2M MHCI -11359 chip0514_480992 14.0 7.16 Chip3 T1D_7 T1D TGTGCCGCGAAGGACACCGACAAGCTCATCTTT CAAKDTDKLIF TRAV8-1*01 TRAJ34*01 12.0 775.0 TGTGCCAGCAGTTTTAATGTGGGGACCGTTCCCTACGAGCAGTACTTC CASSFNVGTVPYEQYF TRBV27*01 TRBJ2-7*01 71.0 3352.0 CAAKDTDKLIF_CASSFNVGTVPYEQYF 1 4481 EBV-BRLF1 EBV 0.67 1264 EBV-BRLF1 502 3979 10 EBV BRLF1 YVLDHLIVV effector memory T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*02:01 B2M MHCI -11360 chip0514_609220 -0.02 6.45 Chip3 tet_neg TGTGCAATACGGGCTTCCAAGATAATCTTT CAIRASKIIF TRAV12-3*01 TRAJ3*01 3.0 126.0 TGTGCCAGTACTACTAGCGGGGGCGTCCTTAGCACAGATACGCAGTATTTT CASTTSGGVLSTDTQYF TRBV2*01 TRBJ2-3*01 18.0 660.0 CAIRASKIIF_CASTTSGGVLSTDTQYF 1 15684 PGT-178 PGT 0.94 1480 PGT-178 383 15301 3 HomoSapiens PGT LLAGIGTVPI Naive T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*02:01 B2M MHCI -11361 chip0514_212942 12.17 6.07 Chip3 T1D_7 T1D TGTGCTCCGGCGGGGGCTTCCGGCTACAGCACCCTCACCTTT CAPAGASGYSTLTF TRAV17*01 TRAJ11*01 22.0 758.0 TGTGCCAGCAGTCGACAGGGAGGATCTAACTATGGCTACACCTTC CASSRQGGSNYGYTF TRBV6-1*01 TRBJ1-2*01 48.0 1844.0 CAPAGASGYSTLTF_CASSRQGGSNYGYTF 1 10528 EBV-LMP2-FLY EBV 0.96 355 EBV-LMP2-FLY 422 10106 6 EBV LMP2 FLYALALLL central memory T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*02:01 B2M MHCI -11362 chip0514_125608 -0.06 6.42 Chip3 tet_neg TGTGCCGTGGGAGATGACAAGATCATCTTT CAVGDDKIIF TRAV12-2*01 TRAJ30*01 6.0 429.0 TGTGCCAGCAGTCGGGACTGGGGGGTAGGTGAGCAGTTCTTC CASSRDWGVGEQFF TRBV12-3*01,TRBV12-4*01 TRBJ2-1*01 6.0 432.0 CAVGDDKIIF_CASSRDWGVGEQFF 1 14730 MART1-ALA MART1 0.73 269 NEG 401 14329 3 HomoSapiens MART1 ALAGIGILTV Naive T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*02:01 B2M MHCI -11363 chip0514_129127 -0.03 6.42 Chip3 T1D_7 T1D CGAGCTCTCTGGATGGCTCGCCGCTGTCTATTGTTCTTC RALWMARRCLLFF TRAV9-2*01 TRAJ12*01 5.0 187.0 TGTGCCAGCAGCTTCAACGCTGAGCAGTTCTTC CASSFNAEQFF TRBV12-3*01,TRBV12-4*01 TRBJ2-1*01 6.0 372.0 RALWMARRCLLFF_CASSFNAEQFF 1 15228 EBV-LMP2A EBV 0.41 700 EBV-LMP2A 380 14848 3 EBV LMP2A CLGGLLTMV Naive T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*02:01 B2M MHCI -11364 chip0514_453842 0.03 6.44 Chip3 T1D_7 T1D TGTGCAATGAGCTTATCTAACTTTGGCTATGAGAAATTGACCTAT CAMSLSNFGYEKLTY TRAV12-3*01 TRAJ48*01 5.0 189.0 TGTGCCTGACGAAATACTGGAGGCTTCAAAACTATCTTT CA*RNTGGFKTIF TRAV24*01 TRAJ9*01 13.0 825.0 0.65 TGTGCCAGCAGCTTGTTAGCGGAGAACACCGGGGAGCTGTTTTTT CASSLLAENTGELFF TRBV5-4*01 TRBJ2-2*01 76.0 3285.0 CAMSLSNFGYEKLTY_CASSLLAENTGELFF 1 16230 PGT-178 PGT 0.76 1480 PGT-178 366 15864 3 HomoSapiens PGT LLAGIGTVPI Naive T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*02:01 B2M MHCI -11365 chip0514_584762 8.28 8.56 Chip3 tet_neg TGTGGAGGGGTTGATGGCTCTAGCAACCCAGGCAAACTAATCTTG CGGVDGSSNPGKLIL TRAV27*01 TRAJ37*01 6.0 241.0 TGCAGTGCTGGAGGGGGGTTGCCCTACGAGCAGTACTTC CSAGGGLPYEQYF TRBV20-1*01 TRBJ2-7*01 26.0 1575.0 CGGVDGSSNPGKLIL_CSAGGGLPYEQYF 1 11508 M1 FLU 0.92 1250 M1 362 11146 8 InfluenzaA M1 GILGFVFTL effector memory T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*02:01 B2M MHCI -11366 chip0514_448954 -1.21 7.73 Chip3 T1D_8 T1D TGTGCCGTGGCTGACATGCGCTTT CAVADMRF TRAV12-2*01 TRAJ43*01 2.0 17.0 TGTGCCTGGAGTCTTGCGGGAGTCGGGGAGCTGTTTTTT CAWSLAGVGELFF TRBV30*01 TRBJ2-2*01 2.0 49.0 CAVADMRF_CAWSLAGVGELFF 1 6987 MART1-ALA MART1 0.5 269 NEG 348 6639 3 HomoSapiens MART1 ALAGIGILTV Naive T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*02:01 B2M MHCI -11367 chip0514_18050 -0.44 9.75 Chip3 T1D_7 T1D TGTGCAATGAGTATATCTAACTTTGGAAATGAGAAATTAACCTTT CAMSISNFGNEKLTF TRAV12-3*01 TRAJ48*01 79.0 3267.0 CAMSISNFGNEKLTF_ 13 7545 PGT-178 PGT 0.82 1480 NEG 303 7242 3 HomoSapiens PGT LLAGIGTVPI Naive T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*02:01 B2M MHCI -11368 chip0514_689437 9.7 7.07 Chip3 tet_neg TGTGCAATGAGAGTGGACAACTTCAACAAATTTTACTTT CAMRVDNFNKFYF TRAV14/DV4*01 TRAJ21*01 17.0 760.0 TGTGCTGTGGAGCCCCTAGGATGGAGGAAGCCAAGGAAATCTCATCTTT CAVEPLGW??aGSQGNLIF TRAV2*01 TRAJ42*01 40.0 1088.0 0.51 TGCAGTGCTAGAGACGGGACAGGGAACGGCTACACCTTC CSARDGTGNGYTF TRBV20-1*01 TRBJ1-2*01 25.0 1502.0 CAMRVDNFNKFYF_CSARDGTGNGYTF 1 8951 EBV-BLMF1 EBV 0.91 2531 EBV-BLMF1 341 8610 10 EBV BLMF1 GLCTLVAML effector memory T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*02:01 B2M MHCI -11369 chip0514_593000 13.34 11.08 Chip3 T1D_7 T1D TGTGCCTGGAGGCCCCTCCAGGGGGGGGGGACTGACGCTTTCTTT CAWRPLQGGGTDAFF TRBV30*01 TRBJ1-1*01 14.0 650.0 _CAWRPLQGGGTDAFF 1 4142 EBV-BRLF1 EBV 0.93 1264 EBV-BRLF1 311 3831 9 EBV BRLF1 YVLDHLIVV effector memory T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*02:01 B2M MHCI -11370 chip0514_50713 0.0 6.41 Chip3 tet_neg TGTGCAGCAAGTTCCCCTCTGGGGCTGGGAGTTACCAACTCACTTTC CAASSPLgg?AGSYQLTF TRAV23/DV6*01,TRAV13-1*01 TRAJ28*01 2.0 84.0 TGCGCCAGCAGCCAAGTTGTAAGGGGCGAGGGTGGCTACACCTTC CASSQVVRGEGGYTF TRBV4-3*01 TRBJ1-2*01 64.0 3195.0 CAASSPLgg?AGSYQLTF_CASSQVVRGEGGYTF 1 13783 POL-132-140 HIV 0.88 37 POL-132-140 331 13452 3 HIV-1 POL LVGPTPVNI Naive T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*02:01 B2M MHCI -11371 chip0514_430172 0.98 8.5 Chip3 T1D_7 T1D TGTGCAGCACGGGGATCAGGAACCTACAAATACATCTTT CAARGSGTYKYIF TRAV12-3*01 TRAJ40*01 60.0 4321.0 TGTGCCAGCAACCAAGATCTGCTAAACACCGGGGAGCTGTTTTTT CASNQDLLNTGELFF TRBV4-2*01 TRBJ2-2*01 67.0 2902.0 CAARGSGTYKYIF_CASNQDLLNTGELFF 1 10989 PGT-178 PGT 0.86 1480 PGT-178 361 10628 4 HomoSapiens PGT LLAGIGTVPI Naive T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*02:01 B2M MHCI -11372 chip0514_783688 -0.65 7.1 Chip3 T1D_7 T1D TGTGCAATGAGCTTATCTAACTTTGGAAATGAGAAATTAACCTTT CAMSLSNFGNEKLTF TRAV12-3*01 TRAJ48*01 78.0 2089.0 TGCGCCAGCAATGCCGGGACTAGCGGGGCCAACGTCCTGACTTTC CASNAGTSGANVLTF TRBV4-1*01 TRBJ2-6*01 18.0 935.0 CAMSLSNFGNEKLTF_CASNAGTSGANVLTF 1 6478 PGT-178 PGT 0.97 1480 PGT-178 308 6170 3 HomoSapiens PGT LLAGIGTVPI Naive T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*02:01 B2M MHCI -11373 chip0514_686064 -0.91 9.37 Chip3 T1D_8 T1D TGTGCAATGAGTTTATCTAACTTTGGAAATGAGAAATTAACCTTT CAMSLSNFGNEKLTF TRAV12-3*01 TRAJ48*01 61.0 1677.0 TGTGCCAGCAGCGTAGAGGTAGGGATGGATGGCTACACCTTC CASSVEVGMDGYTF TRBV9*01 TRBJ1-2*01 54.0 3346.0 CAMSLSNFGNEKLTF_CASSVEVGMDGYTF 1 6248 PGT-178 PGT 0.9 1480 PGT-178 304 5944 3 HomoSapiens PGT LLAGIGTVPI Naive T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*02:01 B2M MHCI -11374 chip0514_63076 0.93 8.54 Chip3 T1D_8 T1D TGTGCAATGAGCTTCTCTAACTTTGGAAATGAGAAATTAACCTTT CAMSFSNFGNEKLTF TRAV12-3*01 TRAJ48*01 42.0 1208.0 TGCAGTGCCTCTGACAGGGCCCGGAGCAATCAGCCCCAGCATTTT CSASDRARSNQPQHF TRBV20-1*01 TRBJ1-5*01 1.0 14.0 CAMSFSNFGNEKLTF_CSASDRARSNQPQHF 1 6967 PGT-178 PGT 1.0 1480 PGT-178 323 6644 4 HomoSapiens PGT LLAGIGTVPI Naive T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*02:01 B2M MHCI -11375 chip0514_554591 10.34 6.67 Chip3 T1D_7 T1D _ 6746 12509 EBV-LMP2-FLY EBV 1.0 355 EBV-LMP2-FLY 319 12190 10 EBV LMP2 FLYALALLL effector memory T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*02:01 B2M MHCI -11376 chip0514_290399 13.39 7.13 Chip3 T1D_7 T1D TGTGCCAGCAGTTCCCTATCGGGAAGCGGTCAGCCCCAGCATTTT CASSSLSGSGQPQHF TRBV28*01 TRBJ1-5*01 43.0 1572.0 _CASSSLSGSGQPQHF 23 4319 EBV-BRLF1 EBV 0.97 1264 EBV-BRLF1 373 3946 10 EBV BRLF1 YVLDHLIVV effector memory T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*02:01 B2M MHCI -11377 chip0514_798173 8.91 9.33 Chip3 T1D_7 T1D TGTGCCGTGAAAGGAAGCCAAGGAAATCTCATCTTT CAVKGSQGNLIF TRAV8-1*01 TRAJ42*01 56.0 3185.0 TGTGCCAGCAGCCACTTGCCCGGGGGGGGTCAAGAGACCCAGTACTTC CASSHLPGGGQETQYF TRBV3-1*01 TRBJ2-5*01 47.0 2305.0 CAVKGSQGNLIF_CASSHLPGGGQETQYF 1 6457 EBV-BRLF1 EBV 0.7 1264 EBV-BRLF1 321 6136 8 EBV BRLF1 YVLDHLIVV effector memory T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*02:01 B2M MHCI -11378 chip0514_147696 -0.81 10.21 Chip3 T1D_7 T1D TGTGCAATGACCCTATCTAACTTTGGAAATGAGAAATTAACCTTT CAMTLSNFGNEKLTF TRAV12-3*01 TRAJ48*01 18.0 654.0 TGTGCCAGCAGCCCGGGTCGGTTAACGGGGGGGTTTGAGGAGACCCAGTACTTC CASSPGRLTGGFEETQYF TRBV11-3*01 TRBJ2-5*01 3.0 60.0 CAMTLSNFGNEKLTF_CASSPGRLTGGFEETQYF 1 7446 PGT-178 PGT 0.63 1480 PGT-178 305 7141 3 HomoSapiens PGT LLAGIGTVPI Naive T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*02:01 B2M MHCI -11379 chip0514_172778 15.39 8.73 Chip3 T1D_8 T1D TGTGTGGTGAACGTACCTAACGACTACAAGCTCAGCTTT CVVNVPNDYKLSF TRAV12-1*01 TRAJ20*01 17.0 1104.0 TGTGTGGTGAGGGCCAAACACCGACAAGCTCATCTTT CVVRAK??cTDKLIF TRAV10*01 TRAJ34*01 20.0 1361.0 0.49 TGTGCCAGCAGTGAAGCGCAGCGGGCGGGGGGCAATGAGCAGTTCTTC CASSEAQRAGGNEQFF TRBV6-1*01 TRBJ2-1*01 5.0 135.0 CVVNVPNDYKLSF_CASSEAQRAGGNEQFF 1 4905 EBV-BLMF1 EBV 0.82 2531 NEG 312 4593 12 EBV BLMF1 GLCTLVAML effector T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*02:01 B2M MHCI -11380 chip0514_443580 0.14 8.45 Chip3 T1D_8 T1D TGCATCGTCAGAGTCGCCCCTTATGGAGGAAGCCAAGGAAATCTCATCTTT CIVRVAPYGGSQGNLIF TRAV26-1*01 TRAJ42*01 38.0 1828.0 TGTGCCTCTTTCATAGCGGGGGGGCCGGGTGAGCAGTTCTTC CASFIAGGPGEQFF TRBV30*01 TRBJ2-1*01 31.0 1607.0 CIVRVAPYGGSQGNLIF_CASFIAGGPGEQFF 1 8216 PGT-178 PGT 0.62 1480 PGT-178 290 7926 4 HomoSapiens PGT LLAGIGTVPI Naive T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*02:01 B2M MHCI -11381 chip0514_809076 15.27 8.87 Chip3 T1D_8 T1D _ 6746 5041 EBV-BLMF1 EBV 0.97 2531 EBV-BLMF1 323 4718 12 EBV BLMF1 GLCTLVAML effector T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*02:01 B2M MHCI -11382 chip0514_126417 -0.46 9.39 Chip3 T1D_7 T1D TGTGCAGAGATCGCAAAGGAGTGGGGGTAGCAACTATAAACTGACATTT CAEIAKEW??gGSNYKLTF TRAV13-2*01 TRAJ53*01 3.0 51.0 TGTGCCAGTAGTATCCTTAGCACAGATACGCAGTATTTT CASSILSTDTQYF TRBV19*01 TRBJ2-3*01 24.0 1384.0 CAEIAKEW??gGSNYKLTF_CASSILSTDTQYF 1 9440 M1 FLU 0.96 1250 M1 258 9182 3 InfluenzaA M1 GILGFVFTL Naive T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*02:01 B2M MHCI -11383 chip0514_686044 0.45 8.02 Chip3 T1D_7 T1D GGTGCCCCCGAGGGGTATGGAACCAAACTGGTCTTT GAPEGYGTKLVF TRAV12-2*01 TRAJ47*01 3.0 474.0 TGTGCTCCCGCACCCCTAATTCTGGGGGTTACCAGAAAGTTACCTTT CAPAPLIct?GGYQKVTF TRAV19*01 TRAJ13*01 4.0 160.0 0.57 TGTGCCAGCAGTGGACTAGCGGGAGGGCTCTACGAGCAGTACTTC CASSGLAGGLYEQYF TRBV28*01 TRBJ2-7*01 24.0 1518.0 GAPEGYGTKLVF_CASSGLAGGLYEQYF 1 13242 PGT-178 PGT 0.89 1480 PGT-178 279 12963 4 HomoSapiens PGT LLAGIGTVPI Naive T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*02:01 B2M MHCI -11384 chip0514_42093 7.12 9.97 Chip3 tet_neg TGTGCAATGAACAGCTGGGGGAAATTGCAGTTT CAMNSWGKLQF TRAV12-3*01 TRAJ24*01 14.0 1047.0 TGTGCCAGTAGTATTCGGAGCTCCTACGAGCAGTACTTC CASSIRSSYEQYF TRBV19*01 TRBJ2-7*01 1.0 43.0 CAMNSWGKLQF_CASSIRSSYEQYF 1 10132 ZNT8-115-123 ZNT8 0.78 74 NEG 278 9854 7 HomoSapiens ZNT8 LLSLFSLWL transitional T cells between effector and memory populations PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*02:01 B2M MHCI -11385 chip0514_78218 -2.69 8.6 Chip3 T1D_7 T1D TGTGCCAGCGCCGGCGGCAGCTCCTACGAGCAGTACTTC CASAGGSSYEQYF TRBV9*01 TRBJ2-7*01 8.0 597.0 _CASAGGSSYEQYF 1 6320 M1 FLU 0.62 1250 NEG 273 6047 2 InfluenzaA M1 GILGFVFTL Naive T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*02:01 B2M MHCI -11386 chip0514_840599 9.74 9.47 Chip3 T1D_7 T1D TGTGCCGTGAAGGACACCGACAAGCTCATCTTT CAVKDTDKLIF TRAV8-1*01 TRAJ34*01 18.0 1296.0 TGCAGTGCTACAGACAGTACCTACAATGAGCAGTTCTTC CSATDSTYNEQFF TRBV20-1*01 TRBJ2-1*01 35.0 2904.0 CAVKDTDKLIF_CSATDSTYNEQFF 8 5557 EBV-BRLF1 EBV 0.94 1264 EBV-BRLF1 261 5296 8 EBV BRLF1 YVLDHLIVV effector memory T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*02:01 B2M MHCI -11387 chip0514_43383 -0.42 8.02 Chip3 T1D_7 T1D TGTGCAATGGGAGGAGATGCCAGACTCATGTTT CAMGGDARLMF TRAV12-3*01 TRAJ31*01 9.0 680.0 TGTGCCAGCAGCTTGGGGTCGGAGCAGTACTTC CASSLGSEQYF TRBV7-9*01 TRBJ2-7*01 8.0 657.0 CAMGGDARLMF_CASSLGSEQYF 1 8289 PGT-178 PGT 0.91 1480 PGT-178 255 8034 4 HomoSapiens PGT LLAGIGTVPI Naive T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*02:01 B2M MHCI -11388 chip0514_595604 -0.79 10.22 Chip3 T1D_7 T1D TGTGCTTATAGGAGCGCGCCCGGTGAAGATTCCAGGTATGCACTCAACTTC CAYRSAPGEDSRYALNF TRAV38-2/DV8*01 TRAJ41*01 21.0 881.0 TGTGCCAGCAAAGGGGCTTACCAAGAGACCCAGTACTTC CASKGAYQETQYF TRBV13*01 TRBJ2-5*01 18.0 1296.0 CAYRSAPGEDSRYALNF_CASKGAYQETQYF 1 8650 HCVNS4B-1807-1816 HCV 0.87 74 HCVNS4B-1807-1816 251 8399 3 HCV NS4B LLFNILGGWV Naive T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*02:01 B2M MHCI -11389 chip0514_295479 8.37 9.82 Chip3 T1D_7 T1D TGTGCTACCGATGACATGCGCTTT CATDDMRF TRAV9-2*01 TRAJ43*01 1.0 16.0 TGTGCCAGCAGCCACCTAGGGGGCGCCTACAATGAGCAGTTCTTC CASSHLGGAYNEQFF TRBV3-1*01 TRBJ2-1*01 32.0 1647.0 CATDDMRF_CASSHLGGAYNEQFF 1 4946 EBV-BRLF1 EBV 0.97 1264 EBV-BRLF1 257 4689 8 EBV BRLF1 YVLDHLIVV effector memory T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*02:01 B2M MHCI -11390 chip0514_597113 -0.51 7.81 Chip3 T1D_7 T1D TGTGCTGTGTATTATAACACCGACAAGCTCATCTTT CAVYYNTDKLIF TRAV21*01 TRAJ34*01 32.0 1980.0 CAVYYNTDKLIF_ 1 8804 GAD65-114-122 GAD65 0.81 63 GAD65-114-122 309 8495 4 HomoSapiens GAD65 VMNILLQYV Naive T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*02:01 B2M MHCI -11391 chip0514_868620 15.2 12.74 Chip3 T1D_8 T1D TGTGCCGTGAAGGACACCGACAAGCTCATCTTT CAVKDTDKLIF TRAV8-1*01 TRAJ34*01 1.0 50.0 TGTGCAGCAGAGTAATGCCCCTGACAGCTGGGGGCAATTGCAGTTT CAAE*CPtg??acSWGQLQF TRAV25*01,TRAV13-1*01 TRAJ24*01 2.0 17.0 0.67 CAVKDTDKLIF_ 56 2041 EBV-BRLF1 EBV 1.0 1264 NEG 278 1763 12 EBV BRLF1 YVLDHLIVV effector T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*02:01 B2M MHCI -11392 chip0514_827271 5.52 8.61 Chip3 T1D_8 T1D TGCAGTGCTAGAGATCTGAGGGCAGGACGCGCCTACGAGCAGTACTTC CSARDLRAGRAYEQYF TRBV20-1*01 TRBJ2-7*01 1.0 18.0 _CSARDLRAGRAYEQYF 1 7709 EBV-LMP2A EBV 0.91 700 EBV-LMP2A 284 7425 6 EBV LMP2A CLGGLLTMV central memory T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*02:01 B2M MHCI -11393 chip0514_117677 -1.26 9.63 Chip3 T1D_8 T1D TGCGCCAGCAGCCAAGATCAGAACGAACAGTACTTC CASSQDQNEQYF TRBV4-1*01 TRBJ2-7*01 14.0 855.0 _CASSQDQNEQYF 1 6492 CVB3-P3A CVB 0.83 77 NEG 272 6220 3 CoxsackievirusB P3A GIIYIIYKL Naive T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*02:01 B2M MHCI -11394 chip0514_615674 9.41 9.33 Chip3 T1D_7 T1D TGTGTGGTGAACGGTGAGGATAGCAGCTATAAATTGATCTTC CVVNGEDSSYKLIF TRAV12-1*01 TRAJ12*01 39.0 1562.0 TGTGCCAGCAGTGACGGGGCCGTAGCACCGGGTGAGCAGTTCTTC CASSDGAVAPGEQFF TRBV2*01 TRBJ2-1*01 51.0 2404.0 CVVNGEDSSYKLIF_CASSDGAVAPGEQFF 1 6615 EBV-BLMF1 EBV 0.56 2531 NEG 278 6337 8 EBV BLMF1 GLCTLVAML effector memory T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*02:01 B2M MHCI -11395 chip0514_450816 14.82 9.91 Chip3 T1D_7 T1D TGTGCCGTGAAAGACACAGGCAAACTAATCTTT CAVKDTGKLIF TRAV8-1*01 TRAJ37*01 40.0 3347.0 TGTGCCAGCAGCCCAATGCCCCTGGATACGCAGTATTTT CASSPMPLDTQYF TRBV3-1*01 TRBJ2-3*01 40.0 2267.0 CAVKDTGKLIF_CASSPMPLDTQYF 1 5898 EBV-BRLF1 EBV 0.82 1264 EBV-BRLF1 267 5631 12 EBV BRLF1 YVLDHLIVV effector T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*02:01 B2M MHCI -11396 chip0514_154868 -0.76 7.3 Chip3 T1D_8 T1D TGTGCCACCAGTGTCGATAGCGGGACCCCCTACAATGAGCAGTTCTTC CATSVDSGTPYNEQFF TRBV24-1*01 TRBJ2-1*01 18.0 868.0 _CATSVDSGTPYNEQFF 1 6599 GAG-433-442 HIV 0.86 19 GAG-433-442 267 6332 3 HIV-1 GAG FLGKIWPSYK Naive T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*02:01 B2M MHCI -11397 chip0514_303300 0.15 8.62 Chip3 T1D_7 T1D TGTGCAGCAAGTATTCGGGCCGGTAACCAGTTCTATTTT CAASIRAGNQFYF TRAV13-1*01 TRAJ49*01 25.0 1519.0 TGTGCCAGCAGCCCCCCCGCGGGAAGTGAGCAGTTCTTC CASSPPAGSEQFF TRBV13*01 TRBJ2-1*01 8.0 772.0 CAASIRAGNQFYF_CASSPPAGSEQFF 1 7087 ROTA-VP3 ROTA 0.71 41 ROTA-VP3 277 6810 4 RotavirusA VP3 YLLPGWKL Naive T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*02:01 B2M MHCI -11398 chip0514_29815 -1.39 8.6 Chip3 T1D_7 T1D TGTGCTTATGACGGAGGAAGCCAAGGAAATCTCATCTTT CAYDGGSQGNLIF TRAV38-1*01 TRAJ42*01 8.0 269.0 TGTGCCAGCAGTGACCTCTACGAGCAGTACTTC CASSDLYEQYF TRBV2*01 TRBJ2-7*01 54.0 3794.0 CAYDGGSQGNLIF_CASSDLYEQYF 1 7476 IGRP-222-230 IGRP 0.95 10 IGRP-222-230 241 7235 4 HomoSapiens IGRP YLLLRVLNI Naive T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*02:01 B2M MHCI -11399 chip0514_643791 0.68 5.36 Chip3 T1D_7 T1D TGTGCCAGCAGTTACATACTAGGGGACATTCAGTACTTC CASSYILGDIQYF TRBV12-3*01,TRBV12-4*01 TRBJ2-4*01 71.0 4124.0 _CASSYILGDIQYF 1 8596 HCV-K1Y HCV 0.56 15 NEG 251 8345 5 HCV POL YLVALGINAV natural killer-like T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*02:01 B2M MHCI -11400 chip0514_830441 7.24 14.33 Chip3 T1D_8 T1D TGTGCTCTCGTATAATGCAGGCAACATGCTCACCTTT CALV*C??aGNMLTF TRAV16*01 TRAJ39*01 1.0 26.0 TGTGCCAGTAGTGTTCGGAGCTCCTACGAGCAGTACTTC CASSVRSSYEQYF TRBV19*01 TRBJ2-7*01 6.0 510.0 CALV*C??aGNMLTF_CASSVRSSYEQYF 1 3326 M1 FLU 1.0 1250 M1 260 3066 7 InfluenzaA M1 GILGFVFTL transitional T cells between effector and memory populations PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*02:01 B2M MHCI -11401 chip0514_819776 16.64 11.09 Chip3 T1D_8 T1D TGTGCCAGTAGTATCTACAGCGGCAATCAGCCCCAGCATTTT CASSIYSGNQPQHF TRBV19*01 TRBJ1-5*01 33.0 1442.0 _CASSIYSGNQPQHF 1 3091 M1 FLU 0.98 1250 M1 299 2792 12 InfluenzaA M1 GILGFVFTL effector T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*02:01 B2M MHCI -11402 chip0514_42819 -0.09 7.58 Chip3 T1D_7 T1D TGTGCCAGCAGCTCGAGGATCGGCTCTGGAAACACCATAATATTT CASSSRIGSGNTIIF TRBV7-8*01 TRBJ1-3*01 12.0 379.0 _CASSSRIGSGNTIIF 1 11617 INS-6-16 INS 0.82 20 INS-6-16 279 11338 3 HomoSapiens INS RLLPLLALLAL Naive T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*02:01 B2M MHCI -11403 chip0514_665135 16.25 10.35 Chip3 T1D_8 T1D TGTTCCGTGCCAGACACCGACAAGCTCATCTTT CSVPDTDKLIF TRAV8-1*01 TRAJ34*01 7.0 398.0 CSVPDTDKLIF_ 1 3717 EBV-BRLF1 EBV 0.98 1264 EBV-BRLF1 283 3434 12 EBV BRLF1 YVLDHLIVV effector T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*02:01 B2M MHCI -11404 chip0514_827048 10.75 6.42 Chip3 tet_neg TGTGCTCCGGAAGGAGATTCCGGATACAGCACCCTCACCTTT CAPEGDSGYSTLTF TRAV17*01 TRAJ11*01 3.0 93.0 TGTGCCGGCCGCCTCGGGCTGGCGGGACTCCTACGAGCAGTACTTC CAGRLGLgc??ggDSYEQYF TRBV7-2*01 TRBJ2-7*01 7.0 783.0 CAPEGDSGYSTLTF_CAGRLGLgc??ggDSYEQYF 1 8585 EBV-LMP2-FLY EBV 0.94 355 EBV-LMP2-FLY 279 8306 10 EBV LMP2 FLYALALLL effector memory T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*02:01 B2M MHCI -11405 chip0514_847823 -2.41 10.13 Chip3 T1D_7 T1D _ 6746 5783 EBV-LMP2A EBV 0.88 700 EBV-LMP2A 276 5507 3 EBV LMP2A CLGGLLTMV Naive T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*02:01 B2M MHCI -11406 chip0514_122833 -0.8 8.12 Chip3 T1D_7 T1D TGTGCCAGCAGTCCTATCGGTCAGCCCCAGCATTTT CASSPIGQPQHF TRBV28*01 TRBJ1-5*01 6.0 466.0 _CASSPIGQPQHF 1 8062 MART1-ALA MART1 0.58 269 MART1-ALA 219 7843 3 HomoSapiens MART1 ALAGIGILTV Naive T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*02:01 B2M MHCI -11407 chip0514_568448 15.34 9.28 Chip3 T1D_7 T1D TGTGCCGTGAGTTCAGGATACAGCACCCTCACCTTT CAVSSGYSTLTF TRAV8-1*01 TRAJ11*01 2.0 279.0 TGTGCCAGCAGTTCCCTATCGGGAAGCGGTCAGCCCCAGCATTTT CASSSLSGSGQPQHF TRBV28*01 TRBJ1-5*01 30.0 1218.0 CAVSSGYSTLTF_CASSSLSGSGQPQHF 12 4231 EBV-BRLF1 EBV 0.95 1264 EBV-BRLF1 298 3933 12 EBV BRLF1 YVLDHLIVV effector T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*02:01 B2M MHCI -11408 chip0514_832003 -1.43 7.07 Chip3 T1D_7 T1D TGTGCCCTCCCCGGGACTAACTTTGGAAATGAGAAATTAACCTTT CALPGTNFGNEKLTF TRAV12-2*01 TRAJ48*01 44.0 2114.0 TGTGCCAGCACCCAGGGGGACTTTTACAATGAGCAGTTCTTC CASTQGDFYNEQFF TRBV6-2*01,TRBV6-3*01 TRBJ2-1*01 19.0 831.0 CALPGTNFGNEKLTF_CASTQGDFYNEQFF 1 8122 HCV-35-44 HCV 0.62 13 NEG 238 7884 3 HCV POL YLLPRRGPRL Naive T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*02:01 B2M MHCI -11409 chip0514_675854 -0.3 6.96 Chip3 T1D_7 T1D TGTGTGGCTTCAGGAGGAGGTGCTGACGGACTCACCTTT CVASGGGADGLTF TRAV12-1*01 TRAJ45*01 11.0 347.0 TGTGCCAGCAGTCCCCTAAACGGGATCTACGAGCAGTACTTC CASSPLNGIYEQYF TRBV28*01 TRBJ2-7*01 29.0 1339.0 CVASGGGADGLTF_CASSPLNGIYEQYF 1 14608 PGT-178 PGT 0.92 1480 PGT-178 248 14360 3 HomoSapiens PGT LLAGIGTVPI Naive T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*02:01 B2M MHCI -11410 chip0514_222181 8.58 10.18 Chip3 T1D_7 T1D TGTGCCGTGAAGGACACCGACAAGCTCATCTTT CAVKDTDKLIF TRAV8-1*01 TRAJ34*01 23.0 2103.0 CAVKDTDKLIF_ 56 6427 EBV-BRLF1 EBV 0.97 1264 EBV-BRLF1 226 6201 8 EBV BRLF1 YVLDHLIVV effector memory T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*02:01 B2M MHCI -11411 chip0514_45527 -2.07 10.57 Chip3 T1D_8 T1D TGTGCTGTGCGTGAGAAGAGATGACAAGATCATCTTT CAVREK??aDDKIIF TRAV8-6*01 TRAJ30*01 1.0 21.0 TGTGCCAGCAGTGGTGGTGGTGAGCAGTTCTTC CASSGGGEQFF TRBV6-1*01 TRBJ2-1*01 6.0 597.0 CAVREK??aDDKIIF_CASSGGGEQFF 1 4799 HCVNS4B-1807-1816 HCV 0.95 74 HCVNS4B-1807-1816 247 4552 3 HCV NS4B LLFNILGGWV Naive T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*02:01 B2M MHCI -11412 chip0514_287222 -2.28 10.92 Chip3 T1D_8 T1D TGTGCCGTGGGGGGTCGGGGTTACCAGAAAGTTACCTTT CAVGGRGYQKVTF TRAV12-2*01 TRAJ13*01 6.0 319.0 TGTGCCAGCAGCGTAGGCACTGAAGCTTTCTTT CASSVGTEAFF TRBV9*01 TRBJ1-1*01 30.0 1846.0 CAVGGRGYQKVTF_CASSVGTEAFF 1 5015 PGT-178 PGT 0.79 1480 PGT-178 242 4773 4 HomoSapiens PGT LLAGIGTVPI Naive T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*02:01 B2M MHCI -11413 chip0514_772861 14.36 10.01 Chip3 T1D_7 T1D TGTGCAGCAAGGGGAGGCGTTACCAGAAAGTTACCTTT CAARGGg?tYQKVTF TRAV13-1*01 TRAJ13*01 11.0 399.0 CAARGGg?tYQKVTF_ 1 4093 EBV-BRLF1 EBV 0.93 1264 EBV-BRLF1 259 3834 12 EBV BRLF1 YVLDHLIVV effector T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*02:01 B2M MHCI -11414 chip0514_163272 -1.99 11.12 Chip3 T1D_8 T1D TGTGCTGTGACCCCCGAGGGGGCAGGCAACATGCTCACCTTT CAVTPEGAGNMLTF TRAV3*01 TRAJ39*01 56.0 4281.0 TGTGCCAGCAGTGGCACCGGGCCGCTATTTCCCAATGAGCAGTTCTTC CASSGTGPLFPNEQFF TRBV6-1*01 TRBJ2-1*01 16.0 698.0 CAVTPEGAGNMLTF_CASSGTGPLFPNEQFF 1 4432 MART1-ALA MART1 1.0 269 NEG 244 4188 3 HomoSapiens MART1 ALAGIGILTV Naive T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*02:01 B2M MHCI -11415 chip0514_789001 9.55 9.77 Chip3 T1D_7 T1D TGCAGTGCTAGAGGGTCCACCTTCTACGAGCAGTACTTC CSARGSTFYEQYF TRBV20-1*01 TRBJ2-7*01 58.0 3965.0 _CSARGSTFYEQYF 4 7201 EBV-BRLF1 EBV 1.0 1264 EBV-BRLF1 280 6921 8 EBV BRLF1 YVLDHLIVV effector memory T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*02:01 B2M MHCI -11416 chip0514_510509 15.55 9.22 Chip3 T1D_7 T1D TGTGCCGTGAATTGGGTCAATGACATGCGCTTT CAVNWVNDMRF TRAV8-1*01 TRAJ43*01 18.0 1281.0 CTGTGCCCGCAGCCCATTAAGCGGGAGCGGGGAGACCCAGTACTTC LCPQPIKcg??ggSGETQYF TRBV3-1*01 TRBJ2-5*01 15.0 873.0 CAVNWVNDMRF_LCPQPIKcg??ggSGETQYF 1 4050 EBV-BRLF1 EBV 0.88 1264 NEG 280 3770 12 EBV BRLF1 YVLDHLIVV effector T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*02:01 B2M MHCI -11417 chip0514_332122 -4.6 9.15 Chip3 T1D_7 T1D TGTGCAATGAGCATATCTAACTTTGGAAATGAGAAATTAACCTTT CAMSISNFGNEKLTF TRAV12-3*01 TRAJ48*01 34.0 1220.0 TGTGCCAGCAGTCCCCGGGGGATGTCGGCAACTAATGAAAAACTGTTTTTT CASSPRGMSATNEKLFF TRBV27*01 TRBJ1-4*01 14.0 528.0 CAMSISNFGNEKLTF_CASSPRGMSATNEKLFF 1 7391 PGT-178 PGT 0.92 1480 PGT-178 253 7138 2 HomoSapiens PGT LLAGIGTVPI Naive T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*02:01 B2M MHCI -11418 chip0514_716357 -0.6 9.34 Chip3 T1D_7 T1D TGTGCAGCATCCGGAGATGACAAGATCATCTTT CAASGDDKIIF TRAV29/DV5*01 TRAJ30*01 3.0 181.0 TGCAGTGCCCGGGACAGGGGGACAGATACGCAGTATTTT CSARDRGTDTQYF TRBV20-1*01 TRBJ2-3*01 38.0 2291.0 CAASGDDKIIF_CSARDRGTDTQYF 1 7685 HCVNS4B-1807-1816 HCV 0.89 74 HCVNS4B-1807-1816 241 7444 3 HCV NS4B LLFNILGGWV Naive T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*02:01 B2M MHCI -11419 chip0514_41062 -1.2 7.51 Chip3 T1D_7 T1D TGCAGTGCTAGAGGGGGGAATTCCTACGAGCAGTACTTC CSARGGNSYEQYF TRBV20-1*01 TRBJ2-7*01 14.0 784.0 _CSARGGNSYEQYF 1 8150 ADH-79-88 ADH 0.93 15 ADH-79-88 250 7900 3 HomoSapiens ADH RQFGPDWIVA Naive T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*02:01 B2M MHCI -11420 chip0514_717118 -0.48 9.92 Chip3 T1D_7 T1D GGTGCAATGAGCTACGGGACAAGGGGCAGCTTCGCACCTACATTT GAMSYGTRGSFAPTF TRAV12-3*01 TRAJ6*01 5.0 235.0 TGTGCCAGCAGTCCCGGGGGGGGGAAGGACACCGGGGAGCTGTTTTTT CASSPGGGKDTGELFF TRBV28*01 TRBJ2-2*01 21.0 738.0 GAMSYGTRGSFAPTF_CASSPGGGKDTGELFF 1 6606 MART1-ALA MART1 0.71 269 MART1-ALA 258 6348 3 HomoSapiens MART1 ALAGIGILTV Naive T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*02:01 B2M MHCI -11421 chip0514_77412 15.52 9.37 Chip3 T1D_7 T1D TGTGCCAGTAGCCCCCTGCTGGGGAGCAATCAGCCCCAGCATTTT CASSPLLGSNQPQHF TRBV19*01 TRBJ1-5*01 16.0 957.0 _CASSPLLGSNQPQHF 1 4103 EBV-BRLF1 EBV 0.87 1264 EBV-BRLF1 221 3882 12 EBV BRLF1 YVLDHLIVV effector T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*02:01 B2M MHCI -11422 chip0514_159140 11.57 6.24 Chip3 T1D_7 T1D TGCGCCAGCAGTGGGGACGGGATGAACACTGAAGCTTTCTTT CASSGDGMNTEAFF TRBV10-2*01 TRBJ1-1*01 67.0 2465.0 _CASSGDGMNTEAFF 131 9845 EBV-LMP2A EBV 0.91 700 EBV-LMP2A 268 9577 10 EBV LMP2A CLGGLLTMV effector memory T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*02:01 B2M MHCI -11423 chip0514_349767 -1.27 8.31 Chip3 T1D_7 T1D TGTGCCGTGGGGCACTATCAGTTAATCTGG CAVGHYQLIW TRAV12-2*01 TRAJ33*01 4.0 192.0 CAVGHYQLIW_ 1 6666 ZNT8-314-322 ZNT8 0.5 16 NEG 245 6421 4 HomoSapiens ZNT8 ILSAHVATA Naive T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*02:01 B2M MHCI -11424 chip0514_275875 5.19 9.22 Chip3 T1D_8 T1D TGTGCAGAGAGGGGGAGAGATGACAAGATCATCTTT CAERGRDDKIIF TRAV13-2*01 TRAJ30*01 41.0 2679.0 TGTGCCAGCAGTGAACTAGCGGCCTCAACCTACGAGCAGTACTTC CASSELAASTYEQYF TRBV2*01 TRBJ2-7*01 18.0 1017.0 CAERGRDDKIIF_CASSELAASTYEQYF 1 3861 ZNT8-107-115 ZNT8 0.44 10 NEG 256 3605 6 HomoSapiens ZNT8 LLIDLTSFL central memory T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*02:01 B2M MHCI -11425 chip0514_863888 -0.67 8.99 Chip3 T1D_7 T1D TGTGCAATGAGCCTATCTAACTTTGGAAATGAGAAATTAACCTTT CAMSLSNFGNEKLTF TRAV12-3*01 TRAJ48*01 56.0 1814.0 TGTGCCAGCAGCTCTCCGCTCACCGGGGAGCTGTTTTTT CASSSPLTGELFF TRBV5-5*01 TRBJ2-2*01 14.0 799.0 CAMSLSNFGNEKLTF_CASSSPLTGELFF 1 8436 PGT-178 PGT 0.78 1480 PGT-178 229 8207 4 HomoSapiens PGT LLAGIGTVPI Naive T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*02:01 B2M MHCI -11426 chip0514_186651 9.41 10.46 Chip3 T1D_7 T1D TGTGCCGTGAAGGACACCGACAAGCTCATCTTT CAVKDTDKLIF TRAV8-1*01 TRAJ34*01 31.0 3087.0 CAVKDTDKLIF_ 56 5346 EBV-BRLF1 EBV 0.97 1264 EBV-BRLF1 255 5091 9 EBV BRLF1 YVLDHLIVV effector memory T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*02:01 B2M MHCI -11427 chip0514_35474 -0.91 7.66 Chip3 T1D_7 T1D TGTGCCGTGGGAGGAAGCTACATACCTACATTT CAVGGSYIPTF TRAV12-2*01 TRAJ6*01 25.0 2575.0 TGTGCCAGCAGACCCCTCGGGGGAACCCTAGAGACCCAGTACTTC CASRPLGGTLETQYF TRBV7-9*01 TRBJ2-5*01 38.0 2207.0 CAVGGSYIPTF_CASRPLGGTLETQYF 1 8243 PGT-178 PGT 0.49 1480 PGT-178 271 7972 3 HomoSapiens PGT LLAGIGTVPI Naive T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*02:01 B2M MHCI -11428 chip0514_271805 -0.84 10.41 Chip3 T1D_7 T1D TGTGCCGAGGATAGCAGCTATAAATTGATCTTC CAEDSSYKLIF TRAV12-1*01 TRAJ12*01 2.0 49.0 TGTGCCAGCGGTACCCCCCAAGTGGCAGATACGCAGTATTTT CASGTPQVADTQYF TRBV6-2*01,TRBV6-3*01 TRBJ2-3*01 2.0 268.0 CAEDSSYKLIF_CASGTPQVADTQYF 1 6797 ZNT8-115-123 ZNT8 0.93 74 ZNT8-115-123 236 6561 3 HomoSapiens ZNT8 LLSLFSLWL Naive T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*02:01 B2M MHCI -11429 chip0514_541202 -4.55 9.36 Chip3 T1D_7 T1D TGTGCAATGAGCGGATCTAACTTCGGAAATGAGAAATTAACCTTT CAMSGSNFGNEKLTF TRAV12-3*01 TRAJ48*01 28.0 1014.0 CAMSGSNFGNEKLTF_ 6 6196 PGT-178 PGT 0.75 1480 PGT-178 234 5962 2 HomoSapiens PGT LLAGIGTVPI Naive T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*02:01 B2M MHCI -11430 chip0514_792173 -1.63 9.24 Chip3 T1D_8 T1D TGTGCAATGACCCTATCTAACTTTGGAAATGAGAAATTAACCTTT CAMTLSNFGNEKLTF TRAV12-3*01 TRAJ48*01 19.0 635.0 CAMTLSNFGNEKLTF_ 2 5206 PGT-178 PGT 0.78 1480 PGT-178 235 4971 3 HomoSapiens PGT LLAGIGTVPI Naive T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*02:01 B2M MHCI -11431 chip0514_543218 -1.3 6.84 Chip3 T1D_7 T1D TGTGCAATGAGTATATCTAACTTTGGAAATGAGAAATTAACCTTT CAMSISNFGNEKLTF TRAV12-3*01 TRAJ48*01 39.0 1292.0 TGTGCAGAGAATGCCCGCTATATTCTGGTTCTGCAAGGCAACTGACCTTT CAENARYIc?tGSARQLTF TRAV13-2*01 TRAJ22*01 25.0 1181.0 0.32 TGTGCCAGTAGTTCGAAGACAGGGGCCGACTCCTACGAGCAGTACTTC CASSSKTGADSYEQYF TRBV19*01 TRBJ2-7*01 7.0 493.0 CAMSISNFGNEKLTF_CASSSKTGADSYEQYF 1 6065 PGT-178 PGT 0.65 1480 PGT-178 227 5838 3 HomoSapiens PGT LLAGIGTVPI Naive T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*02:01 B2M MHCI -11432 chip0514_366861 10.93 9.0 Chip3 T1D_7 T1D TGTGCCGTGAACGGGGGAAACAAACTGGTCTTT CAVNGGNKLVF TRAV12-2*01 TRAJ47*01 1.0 105.0 TGTGCCAGCAGTTTTGGGGCCTTCAATGAGCAGTTCTTC CASSFGAFNEQFF TRBV27*01 TRBJ2-1*01 26.0 1417.0 CAVNGGNKLVF_CASSFGAFNEQFF 1 5420 MART1-ALA MART1 0.62 269 MART1-ALA 236 5184 10 HomoSapiens MART1 ALAGIGILTV effector memory T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*02:01 B2M MHCI -11433 chip0514_581083 -0.93 6.74 Chip3 T1D_7 T1D TGTGCCGTGAGTTCAGATGGCCAGAAGCTGCTCTTT CAVSSDGQKLLF TRAV12-2*01 TRAJ16*01 1.0 30.0 TGTGCCAGCGGGAGCGGGTACCTGGGAGGGAATGAGCAGTTCTTC CASGSGYLGGNEQFF TRBV28*01 TRBJ2-1*01 14.0 644.0 CAVSSDGQKLLF_CASGSGYLGGNEQFF 1 7362 PGT-178 PGT 0.89 1480 PGT-178 231 7131 3 HomoSapiens PGT LLAGIGTVPI Naive T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*02:01 B2M MHCI -11434 chip0514_509843 -0.45 7.09 Chip3 T1D_8 T1D TGTGCCAGCAGCGAAGTGTCGGGCTACACTGAAGCTTTCTTT CASSEVSGYTEAFF TRBV7-9*01 TRBJ1-1*01 37.0 1487.0 _CASSEVSGYTEAFF 1 5944 ZNT8-153-161 ZNT8 0.87 41 ZNT8-153-161 242 5702 3 HomoSapiens ZNT8 VVTGVLVYL Naive T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*02:01 B2M MHCI -11435 chip0514_671644 8.79 11.28 Chip3 T1D_7 T1D _ 6746 4668 EBV-BRLF1 EBV 0.95 1264 EBV-BRLF1 229 4439 7 EBV BRLF1 YVLDHLIVV transitional T cells between effector and memory populations PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*02:01 B2M MHCI -11436 chip0514_160240 -2.41 10.96 Chip3 T1D_8 T1D _ 6746 5360 MART1-ALA MART1 0.62 269 NEG 255 5105 3 HomoSapiens MART1 ALAGIGILTV Naive T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*02:01 B2M MHCI -11437 chip0514_622660 -0.83 7.98 Chip3 T1D_7 T1D TGTGCAATGAAGGGGGACACCGCCAAGCTCATCTTT CAMKGDTAKLIF TRAV14/DV4*01 TRAJ34*01 16.0 1435.0 TGCAGTGCTAGGGACGGGACAGGGGGAGAGACCCAGTACTTC CSARDGTGGETQYF TRBV20-1*01 TRBJ2-5*01 26.0 983.0 CAMKGDTAKLIF_CSARDGTGGETQYF 1 6848 GAD65-114-122 GAD65 1.0 63 GAD65-114-122 253 6595 4 HomoSapiens GAD65 VMNILLQYV Naive T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*02:01 B2M MHCI -11438 chip0514_667622 16.09 10.04 Chip3 T1D_7 T1D TGTGCCGCCAGGGGCGGGGTTACCAGAAAGTTACCTTT CAARGGg?tYQKVTF TRAV13-1*01 TRAJ13*01 33.0 2051.0 TGTGCCAGCAGTTCCCTATCGGGAAGCGGTCAGCCCCAGCATTTT CASSSLSGSGQPQHF TRBV28*01 TRBJ1-5*01 18.0 861.0 CAARGGg?tYQKVTF_CASSSLSGSGQPQHF 1 4493 EBV-BRLF1 EBV 0.71 1264 EBV-BRLF1 288 4205 12 EBV BRLF1 YVLDHLIVV effector T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*02:01 B2M MHCI -11439 chip0514_184737 -2.82 11.44 Chip3 T1D_7 T1D TGTGCCGTGCATGACATGCGCTTT CAVHDMRF TRAV12-2*01 TRAJ43*01 4.0 222.0 TGTGCCGTGAACAAGCGGGAAAGGAAGCCAAGGAAATCTCATCTTT CAVNKREag??gaSQGNLIF TRAV12-2*01 TRAJ42*01 2.0 60.0 0.25 TGTGCCAGCAGCTCGGACAGGGCACTCACCGGGGAGCTGTTTTTT CASSSDRALTGELFF TRBV7-6*01 TRBJ2-2*01 33.0 1638.0 CAVHDMRF_CASSSDRALTGELFF 1 5067 PREINS-2-10 INS 0.8 37 PREINS-2-10 242 4825 1 HomoSapiens PREINS ALWMRLLPL Naive T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*02:01 B2M MHCI -11440 chip0514_714094 14.33 9.99 Chip3 T1D_7 T1D TGTGCCGTGAAGGACACCGACAAGCTCATCTTT CAVKDTDKLIF TRAV8-1*01 TRAJ34*01 16.0 1240.0 TGCAGTGCTACAGACAGTACCTACAATGAGCAGTTCTTC CSATDSTYNEQFF TRBV20-1*01 TRBJ2-1*01 38.0 2443.0 CAVKDTDKLIF_CSATDSTYNEQFF 8 4730 EBV-BRLF1 EBV 0.92 1264 EBV-BRLF1 236 4494 12 EBV BRLF1 YVLDHLIVV effector T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*02:01 B2M MHCI -11441 chip0514_36680 14.06 9.57 Chip3 T1D_7 T1D TGTGCCAGCAGTTCCCTATCGGGAAGCGGTCAACCCCAGCATTTT CASSSLSGSGQPQHF TRBV28*01 TRBJ1-5*01 5.0 257.0 _CASSSLSGSGQPQHF 23 5170 EBV-BRLF1 EBV 0.98 1264 EBV-BRLF1 237 4933 12 EBV BRLF1 YVLDHLIVV effector T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*02:01 B2M MHCI -11442 chip0514_222234 -4.27 8.36 Chip3 T1D_8 T1D TGTGCAATGAGAGGGGCCCCGGGTAGCAACACAGGCAAACTAATCTTT CAMRGAPGSNTGKLIF TRAV14/DV4*01 TRAJ37*01 43.0 1846.0 TGTGCTTCGGAACAGGGCGCCGGGGAGCTGTTTTTT CASEQGAGELFF TRBV30*01 TRBJ2-2*01 15.0 1270.0 CAMRGAPGSNTGKLIF_CASEQGAGELFF 1 5402 ROTA-VP3 ROTA 1.0 41 NEG 227 5175 2 RotavirusA VP3 YLLPGWKL Naive T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*02:01 B2M MHCI -11443 chip0514_833992 8.63 11.45 Chip3 T1D_7 T1D TGTGCTACGGAGGGCTTTTCAGGATACAGCACCCTCACCTTT CATEGFSGYSTLTF TRAV17*01 TRAJ11*01 23.0 871.0 TGTGCCAGCACCGGACAAGGGGGTTACTCTGGCTACACCTTC CASTGQGGYSGYTF TRBV6-1*01 TRBJ1-2*01 28.0 1212.0 CATEGFSGYSTLTF_CASTGQGGYSGYTF 1 5282 EBV-LMP2-FLY EBV 0.74 355 NEG 244 5038 7 EBV LMP2 FLYALALLL transitional T cells between effector and memory populations PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*02:01 B2M MHCI -11444 chip0514_682635 -0.37 9.68 Chip3 T1D_8 T1D TGTGCCGTGTCTACTAGCTATGGAAAGCTGACATTT CAVSTSYGKLTF TRAV12-2*01 TRAJ52*01 39.0 3282.0 CAVSTSYGKLTF_ 1 5614 PGT-178 PGT 0.6 1480 PGT-178 263 5351 3 HomoSapiens PGT LLAGIGTVPI Naive T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*02:01 B2M MHCI -11445 chip0514_584842 5.19 8.81 Chip3 T1D_8 T1D TGTGCAACGGCCATATCTAACTTTGGAAATGAGAAATTAACCTTT CATAISNFGNEKLTF TRAV12-3*01 TRAJ48*01 70.0 2263.0 TGTGCCAGCAGCCCTCATAACCGGTCAACTAATGAAAAACTGTTTTTT CASSPHNRSTNEKLFF TRBV7-2*01 TRBJ1-4*01 71.0 2190.0 CATAISNFGNEKLTF_CASSPHNRSTNEKLFF 1 5884 PGT-178 PGT 0.93 1480 PGT-178 268 5616 6 HomoSapiens PGT LLAGIGTVPI central memory T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*02:01 B2M MHCI -11446 chip0514_576360 13.82 10.25 Chip3 T1D_7 T1D TGTGCTGTGGCTTTGAAATGCTGGCATTAACCGTAGGCTGAATTGG CAVALKCtg??gcINRRLNW TRAV2*01 TRAJ38*01 3.0 127.0 TGTGCCAGCAGCCCCCCGGGACTAATCGGTGATACGCAGTATTTT CASSPPGLIGDTQYF TRBV27*01 TRBJ2-3*01 56.0 2678.0 CAVALKCtg??gcINRRLNW_CASSPPGLIGDTQYF 1 7054 EBV-BRLF1 EBV 0.94 1264 EBV-BRLF1 245 6809 12 EBV BRLF1 YVLDHLIVV effector T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*02:01 B2M MHCI -11447 chip0514_814029 16.25 10.25 Chip3 T1D_7 T1D TGTGCCAGCAGCCTCTTTCATTGGGGGAACACTGAAGCTTTCTTT CASSLFHWGNTEAFF TRBV7-2*01 TRBJ1-1*01 9.0 408.0 _CASSLFHWGNTEAFF 1 5298 IGRP-265-273 IGRP 0.48 34 NEG 283 5015 12 HomoSapiens IGRP VLFGLGFAI effector T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*02:01 B2M MHCI -11448 chip0514_661443 15.87 11.62 Chip3 T1D_7 T1D TGTGCCAGCAAACATCTAGCGGGAAGGCGGGAGACCCAGTACTTC CASKHLAGRRETQYF TRBV28*01 TRBJ2-5*01 57.0 2800.0 _CASKHLAGRRETQYF 1 3048 EBV-BRLF1 EBV 0.96 1264 EBV-BRLF1 241 2807 12 EBV BRLF1 YVLDHLIVV effector T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*02:01 B2M MHCI -11449 chip0514_214912 -1.11 7.86 Chip3 T1D_7 T1D TGTGCAATGGGCATATCTAACTTTGGAAATGAGAAATTAACCTTT CAMGISNFGNEKLTF TRAV12-3*01 TRAJ48*01 56.0 1584.0 CAMGISNFGNEKLTF_ 1 6460 PGT-178 PGT 0.59 1480 PGT-178 241 6219 3 HomoSapiens PGT LLAGIGTVPI Naive T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*02:01 B2M MHCI -11450 chip0514_154422 8.92 9.41 Chip3 T1D_7 T1D TGCAGTGCTACAGACAGTACCTACAATGAGCAGTTCTTC CSATDSTYNEQFF TRBV20-1*01 TRBJ2-1*01 22.0 1566.0 _CSATDSTYNEQFF 6 6991 EBV-BRLF1 EBV 0.98 1264 EBV-BRLF1 242 6749 8 EBV BRLF1 YVLDHLIVV effector memory T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*02:01 B2M MHCI -11451 chip0514_35725 -1.94 8.81 Chip3 T1D_7 T1D TGTGCTGTGGTGGGCGGAGCTGCAGGCAACAAGCTAACTTTT CAVVGGAAGNKLTF TRAV8-3*01 TRAJ17*01 2.0 66.0 TGCGCCAGCAGTCAATCTGTGTAGGAGGGGAATGGATAAGAAGCTTTCCTT CASSQSV*EGNG*EAFL TRBV4-3*01 TRBJ1-1*01 40.0 1110.0 CAVVGGAAGNKLTF_CASSQSV*EGNG*EAFL 1 8404 PGT-178 PGT 0.82 1480 NEG 239 8165 3 HomoSapiens PGT LLAGIGTVPI Naive T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*02:01 B2M MHCI -11452 chip0514_667978 0.84 8.62 Chip3 T1D_7 T1D TGTGCTGTGGGACATTTGGGCGGAGGAAGCTACATACCTACATTT CAVGHLGGGSYIPTF TRAV8-3*01 TRAJ6*01 8.0 276.0 TGTGCCAGCATTAGTCTGGGACAGAACACTGAAGCTTTCTTT CASISLGQNTEAFF TRBV6-1*01 TRBJ1-1*01 36.0 1540.0 CAVGHLGGGSYIPTF_CASISLGQNTEAFF 1 7328 EBV-LMP2-FLY EBV 0.71 355 NEG 255 7073 4 EBV LMP2 FLYALALLL Naive T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*02:01 B2M MHCI -11453 chip0514_407982 12.5 7.07 Chip3 T1D_7 T1D TGTGCCAGCAGTTCCCTATCGGGAAGCGGTCAGCCCCAGCATTTT CASSSLSGSGQPQHF TRBV28*01 TRBJ1-5*01 18.0 638.0 _CASSSLSGSGQPQHF 23 5554 EBV-BRLF1 EBV 0.96 1264 EBV-BRLF1 244 5310 10 EBV BRLF1 YVLDHLIVV effector memory T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*02:01 B2M MHCI -11454 chip0514_756064 7.18 9.55 Chip3 tet_neg TGTGCCAGCAGGTCCGGGGACAGGGTCCAAGAGACCCAGTACTTA CASRSGDRVQETQYL TRBV2*01 TRBJ2-5*01 6.0 268.0 _CASRSGDRVQETQYL 1 13431 PGT-178 PGT 0.73 1480 PGT-178 270 13161 7 HomoSapiens PGT LLAGIGTVPI transitional T cells between effector and memory populations PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*02:01 B2M MHCI -11455 chip0514_529356 -0.95 6.74 Chip3 T1D_7 T1D _ 6746 8432 PGT-178 PGT 0.46 1480 NEG 238 8194 3 HomoSapiens PGT LLAGIGTVPI Naive T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*02:01 B2M MHCI -11456 chip0514_820101 8.6 8.96 Chip3 T1D_7 T1D TGTGCCAGCAGTTCCTTTCACATACAGGGGGGCTACGAGCAGTACTTC CASSSFHIQGGYEQYF TRBV28*01 TRBJ2-7*01 9.0 632.0 _CASSSFHIQGGYEQYF 5 8919 IGRP-265-273 IGRP 0.89 34 IGRP-265-273 227 8692 8 HomoSapiens IGRP VLFGLGFAI effector memory T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*02:01 B2M MHCI -11457 chip0514_442017 14.78 8.71 Chip3 T1D_8 T1D TGTGCAGAGAGTAGCGGGGCCTCCGGCAAACTAATCTTT CAESSGASGKLIF TRAV5*01 TRAJ37*01 1.0 85.0 TGCAGCGTGGGGACAGGGGGCACTAATGAAAAACTGTTTTTT CSVGTGGTNEKLFF TRBV29-1*01 TRBJ1-4*01 172.0 7983.0 CAESSGASGKLIF_CSVGTGGTNEKLFF 7 2658 EBV-BLMF1 EBV 0.6 2531 NEG 249 2409 12 EBV BLMF1 GLCTLVAML effector T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*02:01 B2M MHCI -11458 chip0514_348026 -1.58 7.17 Chip3 T1D_7 T1D TGTGCAATGAGCATATCTAACTTTGGAAATGAGAAATTAACCTTT CAMSISNFGNEKLTF TRAV12-3*01 TRAJ48*01 75.0 2434.0 TGTGCCAGCAGCGTAGAATTCGGGGGGAGCTCCTACAATGAGCAGTTCTTC CASSVEFGGSSYNEQFF TRBV9*01 TRBJ2-1*01 45.0 1968.0 CAMSISNFGNEKLTF_CASSVEFGGSSYNEQFF 1 8101 PGT-178 PGT 0.87 1480 PGT-178 246 7855 3 HomoSapiens PGT LLAGIGTVPI Naive T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*02:01 B2M MHCI -11459 chip0514_35363 14.62 10.12 Chip3 T1D_7 T1D TGTGCCGTGTATGGCACAGGCAAACTAATCTTG CAVYGTGKLIL TRAV8-1*01 TRAJ37*01 16.0 840.0 TGTGCCAGCAGCCAAGGTCCTAGCGGGGGAAATGAGCAGTTCTTC CASSQGPSGGNEQFF TRBV3-1*01 TRBJ2-1*01 83.0 3823.0 CAVYGTGKLIL_CASSQGPSGGNEQFF 1 4163 EBV-BRLF1 EBV 0.98 1264 EBV-BRLF1 238 3925 12 EBV BRLF1 YVLDHLIVV effector T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*02:01 B2M MHCI -11460 chip0514_114691 -1.19 8.69 Chip3 T1D_7 T1D TGTGCCGTGACCCAATACAGCACCCTCACCTTT CAVTQYSTLTF TRAV12-2*01 TRAJ11*01 23.0 1879.0 TGCGCCAGCAGCCTAGCGGGAGCAGGAAATGAGCAGTTCTTC CASSLAGAGNEQFF TRBV5-1*01 TRBJ2-1*01 38.0 1958.0 CAVTQYSTLTF_CASSLAGAGNEQFF 1 7512 ZNT8-173-181 ZNT8 0.75 27 ZNT8-173-181 239 7273 4 HomoSapiens ZNT8 IQATVMIIV Naive T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*02:01 B2M MHCI -11461 chip0514_141979 -0.35 8.05 Chip3 T1D_7 T1D TGTGCAATGAGTATATCTAACTTTGGAAATGAGAAATTAACCTTT CAMSISNFGNEKLTF TRAV12-3*01 TRAJ48*01 22.0 719.0 TGTGCCAGCAACAAAGAGACGTCTTGGGCGGGAGAAAGTTACAATGAGCAGTTCTTC CASNKETSWAGESYNEQFF TRBV6-4*01 TRBJ2-1*01 22.0 566.0 CAMSISNFGNEKLTF_CASNKETSWAGESYNEQFF 1 6167 PGT-178 PGT 0.59 1480 PGT-178 225 5942 4 HomoSapiens PGT LLAGIGTVPI Naive T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*02:01 B2M MHCI -11462 chip0514_309644 -1.9 7.35 Chip3 T1D_7 T1D _ 6746 7719 PGT-178 PGT 0.94 1480 PGT-178 249 7470 3 HomoSapiens PGT LLAGIGTVPI Naive T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*02:01 B2M MHCI -11463 chip0514_361565 -2.1 8.35 Chip3 T1D_7 T1D TGCGCAATGAGTCCCGATAGCAACTATCAGTTAATCTGG CAMSPDSNYQLIW TRAV14/DV4*01 TRAJ33*01 20.0 1664.0 CAMSPDSNYQLIW_ 1 7928 GP160-311-320 HIV 0.75 109 NEG 245 7683 3 HIV-1 GP160 RGPGRAFVTI Naive T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*02:01 B2M MHCI -11464 chip0514_413343 -1.37 10.81 Chip3 T1D_8 T1D TGTGCCAGCACCGATTCAGGACCATTACAGGGGAATGAGAATGGGAACACTGAAGCTTTCTTT CASTDSGPLQGNENGNTEAFF TRBV6-4*01 TRBJ1-1*01 1.0 20.0 _CASTDSGPLQGNENGNTEAFF 1 4858 PGT-178 PGT 0.9 1480 PGT-178 239 4619 3 HomoSapiens PGT LLAGIGTVPI Naive T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*02:01 B2M MHCI -11465 chip0514_339858 -1.81 12.11 Chip3 T1D_7 T1D TGTGCCGTGAATCTGGTGTATTCAGGAGGAGGTGCTGACGGACTCACCTTT CAVNLVYSGGGADGLTF TRAV12-2*01 TRAJ45*01 18.0 575.0 TGTGCCATCAGTGAGTCGTCAGGACTCTCTGGAAACACCATATATTTT CAISESSGLSGNTIYF TRBV10-3*01 TRBJ1-3*01 21.0 654.0 CAVNLVYSGGGADGLTF_CAISESSGLSGNTIYF 1 5480 MART1-ALA MART1 0.61 269 NEG 212 5268 1 HomoSapiens MART1 ALAGIGILTV Naive T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*02:01 B2M MHCI -11466 chip0514_657579 -4.44 9.61 Chip3 T1D_7 T1D TGTGTGGTGAACATTGGAGCGGCCACGGGCAGGAGAGCACTTACTTTT CVVNIGAATGRRALTF TRAV12-1*01 TRAJ5*01 56.0 2009.0 TGTGCCAGCAGTTTTTTAACAGGTGCCTACGAGCAGTACTTC CASSFLTGAYEQYF TRBV28*01 TRBJ2-7*01 60.0 3231.0 CVVNIGAATGRRALTF_CASSFLTGAYEQYF 1 6669 M1 FLU 0.88 1250 M1 207 6462 2 InfluenzaA M1 GILGFVFTL Naive T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*02:01 B2M MHCI -11467 chip0514_256491 -1.2 8.83 Chip3 T1D_8 T1D TGCATCCTGAGACAGGGCGGATCTGAAAAGCTGGTCTTT CILRQGGSEKLVF TRAV26-2*01 TRAJ57*01 1.0 39.0 TGCGCCAGCCGTGCGGGGGTTAGCAATCAGCCCCAGCATTTT CASRAGVSNQPQHF TRBV10-2*01 TRBJ1-5*01 10.0 328.0 CILRQGGSEKLVF_CASRAGVSNQPQHF 1 8171 ZNT8-153-161 ZNT8 0.9 41 NEG 235 7936 3 HomoSapiens ZNT8 VVTGVLVYL Naive T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*02:01 B2M MHCI -11468 chip0514_711970 -0.74 7.83 Chip3 T1D_7 T1D TGTGCCATGAGAGAACCGCTCGCCCCCCGGTAACCAGTTCTATTTT CAMREPLgc??ccPGNQFYF TRAV14/DV4*01 TRAJ49*01 51.0 2634.0 CAMREPLgc??ccPGNQFYF_ 1 6409 ZNT8-115-123 ZNT8 0.95 74 ZNT8-115-123 201 6208 3 HomoSapiens ZNT8 LLSLFSLWL Naive T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*02:01 B2M MHCI -11469 chip0514_189951 10.08 11.06 Chip3 T1D_8 T1D TGTGCCGTCTCAGGAACCTACAAATACATCTTT CAVSGTYKYIF TRAV8-1*01 TRAJ40*01 8.0 506.0 TGTGCCAGCAGACGACAGGGTACCTATGGCTACACCTTC CASRRQGTYGYTF TRBV6-1*01 TRBJ1-2*01 46.0 2172.0 CAVSGTYKYIF_CASRRQGTYGYTF 1 4355 EBV-BRLF1 EBV 1.0 1264 NEG 239 4116 9 EBV BRLF1 YVLDHLIVV effector memory T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*02:01 B2M MHCI -11470 chip0514_300841 -1.91 9.49 Chip3 T1D_7 T1D _ 6746 7845 IGRP-152-160-WLI IGRP 0.81 27 IGRP-152-160-WLI 215 7630 3 HomoSapiens IGRP FLWSVFWLI Naive T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*02:01 B2M MHCI -11471 chip0514_260090 -1.96 7.92 Chip3 T1D_7 T1D TGTGCCAGCAGCCGCCAGGGTTCCTACAATGAGCAGTTCTTC CASSRQGSYNEQFF TRBV28*01 TRBJ2-1*01 38.0 2119.0 _CASSRQGSYNEQFF 1 8568 VPR-59-67 HIV 0.67 16 VPR-59-67 233 8335 3 HIV-1 VPR AIIRILQQL Naive T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*02:01 B2M MHCI -11472 chip0514_637975 -4.04 10.79 Chip3 T1D_8 T1D TGTGCCGTCGCTGGCCAGAAGCTGCTCTTT CAVAGQKLLF TRAV12-2*01 TRAJ16*01 1.0 47.0 TGTGCCAGCAGTGACAGACTGTTGGGGAATCAGCCCCAGCATTTT CASSDRLLGNQPQHF TRBV28*01 TRBJ1-5*01 39.0 1342.0 CAVAGQKLLF_CASSDRLLGNQPQHF 1 4189 PGT-178 PGT 0.67 1480 NEG 226 3963 2 HomoSapiens PGT LLAGIGTVPI Naive T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*02:01 B2M MHCI -11473 chip0514_348010 -0.9 9.22 Chip3 T1D_7 T1D TGTGCAATGAGTTGAGGGAGCGCTGACCAGCTCATCCTT CAMS*GSADQLIL TRAV12-3*01 TRAJ30*01 16.0 979.0 TGTGCCAGCAGTTCCCTAGCGGGATTGACTAGCACAGATACGCAGTATTTT CASSSLAGLTSTDTQYF TRBV12-3*01,TRBV12-4*01 TRBJ2-3*01 1.0 31.0 CAMS*GSADQLIL_CASSSLAGLTSTDTQYF 1 6948 PGT-178 PGT 1.0 1480 PGT-178 204 6744 4 HomoSapiens PGT LLAGIGTVPI Naive T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*02:01 B2M MHCI -11474 chip0514_779729 13.66 8.76 Chip3 T1D_8 T1D TGTGCCAGCAGTGGTGACACGACTAGCGCCTACAATGAGCAGTTCTTC CASSGDTTSAYNEQFF TRBV27*01 TRBJ2-1*01 51.0 3822.0 _CASSGDTTSAYNEQFF 2 2347 EBV-BRLF1 EBV 0.83 1264 EBV-BRLF1 232 2115 12 EBV BRLF1 YVLDHLIVV effector T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*02:01 B2M MHCI -11475 chip0514_790749 -0.82 7.54 Chip3 T1D_7 T1D TGTGCCAGCAGCCAAGATGGCAGGGGAGGGACCGGGGAGCTGTTTTTT CASSQDGRGGTGELFF TRBV3-1*01 TRBJ2-2*01 34.0 1611.0 _CASSQDGRGGTGELFF 1 8544 ZNT8-115-123 ZNT8 0.86 74 ZNT8-115-123 232 8312 3 HomoSapiens ZNT8 LLSLFSLWL Naive T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*02:01 B2M MHCI -11476 chip0514_80987 6.12 12.1 Chip3 T1D_7 T1D TGTGCTGTGACCTTTCTTGGAGGAAGCCAAGGAAATCTCATCTTT CAVTFLGGSQGNLIF TRAV8-4*01 TRAJ42*01 9.0 436.0 CAVTFLGGSQGNLIF_ 1 6894 M1 FLU 0.95 1250 M1 241 6653 7 InfluenzaA M1 GILGFVFTL transitional T cells between effector and memory populations PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*02:01 B2M MHCI -11477 chip0514_663170 -0.9 10.2 Chip3 T1D_7 T1D TGTGCAATGATGAAATCTAACTTTGGAAATGAGAAATTAACCTTT CAMMKSNFGNEKLTF TRAV12-3*01 TRAJ48*01 37.0 939.0 TGTGCCAGCAGTGGACAGAGACTCCGCACAGATACGCAGTATTTT CASSGQRLRTDTQYF TRBV2*01 TRBJ2-3*01 63.0 3064.0 CAMMKSNFGNEKLTF_CASSGQRLRTDTQYF 1 6365 PGT-178 PGT 0.87 1480 PGT-178 225 6140 3 HomoSapiens PGT LLAGIGTVPI Naive T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*02:01 B2M MHCI -11478 chip0514_128166 -2.9 13.76 Chip3 T1D_8 T1D TGCGCCAGCAGTCAGGGGGGCTCTGGAAACACCATATATTTT CASSQGGSGNTIYF TRBV4-3*01 TRBJ1-3*01 30.0 1725.0 _CASSQGGSGNTIYF 1 3334 PPI-29-38 INS 0.88 6 NEG 210 3124 1 HomoSapiens PPI HLCGSHLVEA Naive T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*02:01 B2M MHCI -11479 chip0514_612341 -1.26 6.74 Chip3 T1D_7 T1D TGTGCCGTGAACGCACCAATTCAGGGAGCCCAGAAGCTGGTATTT CAVNAPIQGAQKLVF TRAV12-2*01 TRAJ54*01 28.0 1049.0 TGTGCCAGCGGCTCCCCGTGGACGGGCTACGAGCAGTACTTC CASGSPWTGYEQYF TRBV28*01 TRBJ2-7*01 20.0 1317.0 CAVNAPIQGAQKLVF_CASGSPWTGYEQYF 1 6776 CVB3-P3A CVB 0.83 77 CVB3-P3A 253 6523 3 CoxsackievirusB P3A GIIYIIYKL Naive T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*02:01 B2M MHCI -11480 chip0514_447331 -2.51 8.19 Chip3 T1D_8 T1D TGTGCCGCCCCTTCAGGAAACACACCTCTTGTCTTT CAAPSGNTPLVF TRAV12-2*01 TRAJ29*01 3.0 195.0 TGTGCCAGCAGCTTAGGGCGGGGAGTGGAGACCCAGTACTTC CASSLGRGVETQYF TRBV7-9*01 TRBJ2-5*01 12.0 625.0 CAAPSGNTPLVF_CASSLGRGVETQYF 1 4637 PGT-178 PGT 0.64 1480 NEG 225 4412 2 HomoSapiens PGT LLAGIGTVPI Naive T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*02:01 B2M MHCI -11481 chip0514_881485 -0.12 6.8 Chip3 tet_neg _ 6746 9796 PGT-178 PGT 0.67 1480 NEG 214 9582 3 HomoSapiens PGT LLAGIGTVPI Naive T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*02:01 B2M MHCI -11482 chip0514_362322 6.8 11.59 Chip3 T1D_8 T1D TGTGCCGTGAATGCGGGCGGAGGAAGCCAAGGAAATCTCATCTTT CAVNAGGGSQGNLIF TRAV8-1*01 TRAJ42*01 66.0 3391.0 TGTGCCAGTAGTTCTCGGAGCGCCTACGAGCAGTACTTC CASSSRSAYEQYF TRBV19*01 TRBJ2-7*01 7.0 540.0 CAVNAGGGSQGNLIF_CASSSRSAYEQYF 1 5776 M1 FLU 0.97 1250 M1 222 5554 7 InfluenzaA M1 GILGFVFTL transitional T cells between effector and memory populations PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*02:01 B2M MHCI -11483 chip0514_866887 15.23 12.11 Chip3 T1D_7 T1D TGTGCAGCAAGGGGAGGGCTCACCAGAAAGCTACCTTT CAARGGc?tHQKATF TRAV13-1*01 TRAJ13*01 4.0 188.0 TGTGCCAGCAGTTCCCTATCGGGAAGCGGTCAGCCCCAGCATTTT CASSSLSGSGQPQHF TRBV28*01 TRBJ1-5*01 39.0 1899.0 CAARGGc?tHQKATF_CASSSLSGSGQPQHF 1 2603 EBV-BRLF1 EBV 0.96 1264 EBV-BRLF1 226 2377 12 EBV BRLF1 YVLDHLIVV effector T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*02:01 B2M MHCI -11484 chip0514_301421 -2.28 8.06 Chip3 T1D_8 T1D TGTGCCGTGAACGACGGAGGAGGAAACAAACTCACCTTT CAVNDGGGNKLTF TRAV12-2*01 TRAJ10*01 74.0 3999.0 TGTGCCAGCAGCTGGGGGGGTAGCAATCAGCCCCAGCATTTT CASSWGGSNQPQHF TRBV5-6*01 TRBJ1-5*01 19.0 623.0 CAVNDGGGNKLTF_CASSWGGSNQPQHF 1 5044 ROTA-VP3 ROTA 1.0 41 NEG 224 4820 3 RotavirusA VP3 YLLPGWKL Naive T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*02:01 B2M MHCI -11485 chip0514_87459 -3.76 9.88 Chip3 T1D_7 T1D TGTGCCAGCAGTTTATTAGCGGGCGACAATGAGCAGTTCTTC CASSLLAGDNEQFF TRBV27*01 TRBJ2-1*01 2.0 112.0 _CASSLLAGDNEQFF 1 6076 ZNT8-281-290 ZNT8 0.84 6 ZNT8-281-290 225 5851 4 HomoSapiens ZNT8 SLNYSGVKEL Naive T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*02:01 B2M MHCI -11486 chip0514_599231 0.76 5.33 Chip3 tet_neg TGTGCCAGCAGCTTGGCAGCAGGGGGCGAATCTGGAAACACCATATATTTT CASSLAAGGESGNTIYF TRBV5-5*01 TRBJ1-3*01 21.0 689.0 _CASSLAAGGESGNTIYF 1 13011 PGT-178 PGT 0.73 1480 PGT-178 233 12778 5 HomoSapiens PGT LLAGIGTVPI natural killer-like T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*02:01 B2M MHCI -11487 chip0514_582713 6.09 13.89 Chip3 T1D_8 T1D TGTGCTTTCATGATAGGGGCTGGTGGTACTAGCTATGGAAAGCTGACATTT CAFMIGAGGTSYGKLTF TRAV38-1*01 TRAJ52*01 1.0 16.0 TGTGCCAGTAGTACGGGGAGCTACGGCTACACCTTC CASSTGSYGYTF TRBV19*01 TRBJ1-2*01 55.0 3289.0 CAFMIGAGGTSYGKLTF_CASSTGSYGYTF 1 4470 M1 FLU 0.86 1250 M1 229 4241 7 InfluenzaA M1 GILGFVFTL transitional T cells between effector and memory populations PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*02:01 B2M MHCI -11488 chip0514_729767 13.6 10.47 Chip3 T1D_8 T1D TGCAGTGCTAGAGACCGGACAGGGAATGGCTACACCTTC CSARDRTGNGYTF TRBV20-1*01 TRBJ1-2*01 20.0 876.0 _CSARDRTGNGYTF 7 3832 EBV-BLMF1 EBV 0.97 2531 EBV-BLMF1 241 3591 12 EBV BLMF1 GLCTLVAML effector T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*02:01 B2M MHCI -11489 chip0514_382484 -1.64 8.88 Chip3 T1D_8 T1D TGTGTGGTGAACCCGTCTAACTTTGGAAATGAGAAATTAACCTTT CVVNPSNFGNEKLTF TRAV12-1*01 TRAJ48*01 77.0 2928.0 TGTGCCAGCATAGGGACAGGGGCCACAGATACGCAGTATTTT CASIGTGATDTQYF TRBV2*01 TRBJ2-3*01 18.0 862.0 CVVNPSNFGNEKLTF_CASIGTGATDTQYF 1 6566 PGT-178 PGT 0.79 1480 NEG 223 6343 3 HomoSapiens PGT LLAGIGTVPI Naive T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*02:01 B2M MHCI -11490 chip0514_8495 7.69 8.69 Chip3 tet_neg TGTGCTGTGTGGAATTCAGGAAACACACCTCTTGTCTTT CAVWNSGNTPLVF TRAV21*01 TRAJ29*01 12.0 614.0 TGTGCCAGCAGTGTGGACACCTTGAACACTGAAGCCTTCTTT CASSVDTLNTEAFF TRBV6-1*01 TRBJ1-1*01 16.0 790.0 CAVWNSGNTPLVF_CASSVDTLNTEAFF 1 12788 M1 FLU 0.97 1250 M1 290 12498 8 InfluenzaA M1 GILGFVFTL effector memory T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*02:01 B2M MHCI -11491 chip0514_103760 13.38 9.26 Chip3 T1D_7 T1D TGTGCTTATAGGAGCCCGCCCTCATCTGAAAAGCTGGTCTTT CAYRSPPSSEKLVF TRAV38-2/DV8*01 TRAJ57*01 1.0 23.0 TGTGCCAGCAGTGAGACCACCTTAAGTATAGGGACGCAGTATTTT CASSETTLSIGTQYF TRBV6-1*01 TRBJ2-3*01 32.0 1014.0 CAYRSPPSSEKLVF_CASSETTLSIGTQYF 1 4383 EBV-BRLF1 EBV 0.92 1264 EBV-BRLF1 207 4176 12 EBV BRLF1 YVLDHLIVV effector T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*02:01 B2M MHCI -11492 chip0514_597545 -2.77 8.19 Chip3 T1D_8 T1D _ 6746 5460 PREINS-6-14 INS 0.78 20 NEG 195 5265 2 HomoSapiens PREINS RLLPLLALL Naive T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*02:01 B2M MHCI -11493 chip0514_409476 -1.38 7.36 Chip3 T1D_7 T1D TGCGCCAGCAGCTTACCGGACTACGAGCAGTACTTC CASSLPDYEQYF TRBV5-1*01 TRBJ2-7*01 39.0 2844.0 _CASSLPDYEQYF 1 7253 ZNT8-173-181 ZNT8 0.49 27 ZNT8-173-181 225 7028 3 HomoSapiens ZNT8 IQATVMIIV Naive T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*02:01 B2M MHCI -11494 chip0514_311301 16.27 10.95 Chip3 T1D_7 T1D TGTGCTCTCCTGGATGGATAGCAGCTATAAATTGATCTTC CALLDGta??gcSYKLIF TRAV6*01 TRAJ12*01 1.0 21.0 TGCAGCGTTGAAGATTCATTGGCTAGCGGGAGTTTAAATGAGCAGTTCTTC CSVEDSLASGSLNEQFF TRBV29-1*01 TRBJ2-1*01 152.0 9104.0 CALLDGta??gcSYKLIF_CSVEDSLASGSLNEQFF 1 4483 EBV-BLMF1 EBV 0.86 2531 NEG 228 4255 12 EBV BLMF1 GLCTLVAML effector T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*02:01 B2M MHCI -11495 chip0514_75736 16.03 11.37 Chip3 T1D_7 T1D TGTGCAGAGAGTATAAGCACAGGCAAACTAATCTTT CAESISTGKLIF TRAV5*01 TRAJ37*01 20.0 1080.0 TGCAGCGTTGGGACAGGGGGAACTAATGAAAAACTGTTTTTT CSVGTGGTNEKLFF TRBV29-1*01 TRBJ1-4*01 47.0 2281.0 CAESISTGKLIF_CSVGTGGTNEKLFF 1 3044 EBV-BLMF1 EBV 0.88 2531 EBV-BLMF1 229 2815 12 EBV BLMF1 GLCTLVAML effector T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*02:01 B2M MHCI -11496 chip0514_44102 6.87 10.33 Chip3 T1D_7 T1D TGTGCCGTGAAGGACACCGACAAGCTCATCTTT CAVKDTDKLIF TRAV8-1*01 TRAJ34*01 1.0 151.0 TGTGCCACACGAAGCACAGATACGCAGTATTTT CATRSTDTQYF TRBV27*01 TRBJ2-3*01 1.0 40.0 CAVKDTDKLIF_CATRSTDTQYF 1 8628 EBV-BRLF1 EBV 0.98 1264 EBV-BRLF1 207 8421 7 EBV BRLF1 YVLDHLIVV transitional T cells between effector and memory populations PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*02:01 B2M MHCI -11497 chip0514_258306 8.19 12.23 Chip3 T1D_8 T1D TGTGCCAGCAGAACCGAGACAGGGGGGGCGAGTGAGCAGTTCTTC CASRTETGGASEQFF TRBV6-2*01,TRBV6-3*01 TRBJ2-1*01 20.0 649.0 _CASRTETGGASEQFF 1 4119 EBV-BRLF1 EBV 0.96 1264 EBV-BRLF1 227 3892 7 EBV BRLF1 YVLDHLIVV transitional T cells between effector and memory populations PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*02:01 B2M MHCI -11498 chip0514_190882 5.87 11.72 Chip3 T1D_7 T1D TGTGCAGCCACCATATCTAACTTTGGAAATGAGAAATTAACCTTT CAATISNFGNEKLTF TRAV12-3*01 TRAJ48*01 30.0 1387.0 TGTGCCAGCAGCTTGAAGATCGGGAGGGGTTATACGCAGTATTTT CASSLKIGRGYTQYF TRBV5-6*01 TRBJ2-3*01 31.0 1357.0 CAATISNFGNEKLTF_CASSLKIGRGYTQYF 1 6824 PGT-178 PGT 0.88 1480 PGT-178 208 6616 7 HomoSapiens PGT LLAGIGTVPI transitional T cells between effector and memory populations PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*02:01 B2M MHCI -11499 chip0514_856588 -0.76 7.74 Chip3 T1D_7 T1D TGTACAGTGAAGGAAAACGGAGGAGGTGCTGACGGACTCACGGTT CTVKENGGGADGLTV TRAV8-1*01 TRAJ45*01 3.0 115.0 TGTGCCAGCAGCTGGGGGGCCAACGTCCTGACTTTC CASSWGANVLTF TRBV5-6*01 TRBJ2-6*01 28.0 1910.0 CTVKENGGGADGLTV_CASSWGANVLTF 1 8482 NEF-136-145 FLU 0.61 9 NEG 231 8251 4 InfluenzaA NEF PLTFGWCYKL Naive T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*02:01 B2M MHCI -11500 chip0514_230088 -2.57 10.38 Chip3 T1D_7 T1D TGCCTCGTGGGTTTCAATGACATGCGCTTT CLVGFNDMRF TRAV4*01 TRAJ43*01 1.0 23.0 TGTGCCAGCAGTGAAGGGGGGGGCTACGAGCAGTACTTC CASSEGGGYEQYF TRBV2*01 TRBJ2-7*01 11.0 550.0 CLVGFNDMRF_CASSEGGGYEQYF 1 7176 HCVNS3-1073-1081 HCV 0.83 36 HCVNS3-1073-1081 218 6958 4 HCV NS3 CINGVCWTV Naive T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*02:01 B2M MHCI -11501 chip0514_780374 -0.83 7.7 Chip3 T1D_7 T1D TGTGCCATGAGCCCTAGTACTCTGGGTCTGGCCGTTACCACCTCCCTTTC CAMSPSTLg?gSGRYHLPF TRAV12-3*01 TRAJ28*01 2.0 133.0 TGTGCCAGCAGCTCAGCGGCGGAACATAATTCACCCCTCCACTTT CASSSAAEHNSPLHF TRBV11-2*01 TRBJ1-6*01 36.0 1331.0 CAMSPSTLg?gSGRYHLPF_CASSSAAEHNSPLHF 1 8662 GAD65-114-122 GAD65 0.71 63 GAD65-114-122 228 8434 3 HomoSapiens GAD65 VMNILLQYV Naive T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*02:01 B2M MHCI -11502 chip0514_480015 -2.36 12.68 Chip3 T1D_7 T1D TGTGCTCTAGCCAGTTTTGGTCCGAATTTTGTCTTT CALASFGPNFVF TRAV6*01 TRAJ26*01 6.0 176.0 TGCAGCGCCGAGGTTGGGCAGCCAATGGACACTGAAGCTTTCTTT CSAEVGQPMDTEAFF TRBV29-1*01 TRBJ1-1*01 123.0 4738.0 CALASFGPNFVF_CSAEVGQPMDTEAFF 1 5263 ZNT8-16-24 ZNT8 0.78 39 NEG 234 5029 1 HomoSapiens ZNT8 KMYAFTLES Naive T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*02:01 B2M MHCI -11503 chip0514_352349 15.24 12.27 Chip3 T1D_7 T1D TGTGCCGTGAAAAACACCGACAAGCTCATCTTT CAVKNTDKLIF TRAV8-1*01 TRAJ34*01 9.0 573.0 TGTGCCAGCAGCCAAGCGACCGGCTATGGCTACACCTTC CASSQATGYGYTF TRBV3-1*01 TRBJ1-2*01 21.0 1212.0 CAVKNTDKLIF_CASSQATGYGYTF 1 2707 EBV-BRLF1 EBV 0.93 1264 NEG 234 2473 12 EBV BRLF1 YVLDHLIVV effector T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*02:01 B2M MHCI -11504 chip0514_844210 5.54 8.61 Chip3 T1D_8 T1D TGTGTGGGTACAAGGTCAGGAGGAAGCTACATACCTACATTT CVGTRSGGSYIPTF TRAV12-1*01 TRAJ6*01 42.0 2031.0 TGTGCCAGCAGCCAAGATTCTTCCGAGCAGTACTTC CASSQDSSEQYF TRBV4-2*01 TRBJ2-7*01 25.0 1544.0 CVGTRSGGSYIPTF_CASSQDSSEQYF 2 9856 EBV-LMP1-2 EBV 0.89 41 EBV-LMP1-2 228 9628 6 EBV LMP1 YLQQNWWTL central memory T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*02:01 B2M MHCI -11505 chip0514_830786 14.8 11.26 Chip3 T1D_7 T1D TGTGCCGGTAAAACCTCCTACGACAAGGTGATATTT CAGKTSYDKVIF TRAV8-1*01 TRAJ50*01 16.0 977.0 TGTGCCAGCTGGCCGATATCGGGGGGCTACGAGCAGTACTTC CASWPISGGYEQYF TRBV6-1*01 TRBJ2-7*01 6.0 226.0 CAGKTSYDKVIF_CASWPISGGYEQYF 1 3387 EBV-BRLF1 EBV 0.91 1264 EBV-BRLF1 202 3185 12 EBV BRLF1 YVLDHLIVV effector T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*02:01 B2M MHCI -11506 chip0514_14183 10.12 7.12 Chip3 T1D_7 T1D TGTGCCAGCAGTTTATCAGGGGATAGGGAGCAGTTCTTC CASSLSGDREQFF TRBV28*01 TRBJ2-1*01 73.0 4589.0 _CASSLSGDREQFF 1 5506 EBV-BLMF1 EBV 0.76 2531 NEG 233 5273 10 EBV BLMF1 GLCTLVAML effector memory T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*02:01 B2M MHCI -11507 chip0514_658492 -1.45 11.71 Chip3 T1D_7 T1D TGTGCTGTGGTCCTTAACGACTACAAGCTCAGCTTT CAVVLNDYKLSF TRAV8-3*01 TRAJ20*01 3.0 165.0 TGTGCCAGCAGGGGACCCGGGGAGCTGTTTTTT CASRGPGELFF TRBV12-3*01,TRBV12-4*01 TRBJ2-2*01 8.0 524.0 CAVVLNDYKLSF_CASRGPGELFF 1 5519 MART1-ALA MART1 0.79 269 MART1-ALA 228 5291 3 HomoSapiens MART1 ALAGIGILTV Naive T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*02:01 B2M MHCI -11508 chip0514_38975 -2.52 9.25 Chip3 T1D_8 T1D TGTGCAATGAGCTCCTCTAACTTTGGAAATGAGAAATTAACCTTT CAMSSSNFGNEKLTF TRAV12-3*01 TRAJ48*01 18.0 302.0 TGTGCCAGCAGCCAAGTGTTAGGGCGACATGACAGCCCGAACACTGAAGCTTTCTTT CASSQVLGRHDSPNTEAFF TRBV3-1*01 TRBJ1-1*01 2.0 9.0 CAMSSSNFGNEKLTF_CASSQVLGRHDSPNTEAFF 1 7006 PGT-178 PGT 0.73 1480 PGT-178 243 6763 3 HomoSapiens PGT LLAGIGTVPI Naive T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*02:01 B2M MHCI -11509 chip0514_677261 6.89 10.64 Chip3 T1D_7 T1D TGTGCTGCGGAGGGGGTTTCAGGATACAGCACCCTCACCTTT CAAEGVSGYSTLTF TRAV17*01 TRAJ11*01 18.0 590.0 CAAEGVSGYSTLTF_ 1 8792 EBV-LMP2-FLY EBV 0.84 355 EBV-LMP2-FLY 235 8557 7 EBV LMP2 FLYALALLL transitional T cells between effector and memory populations PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*02:01 B2M MHCI -11510 chip0514_836614 -0.96 9.04 Chip3 T1D_7 T1D TGTGCTGTGAGTGGTAGGACATCAGGAGGAAGCTACATACCTACATTT CAVSGRTSGGSYIPTF TRAV8-3*01,TRAV8-4*01 TRAJ6*01 33.0 905.0 CAVSGRTSGGSYIPTF_ 1 8461 PGT-178 PGT 0.74 1480 PGT-178 228 8233 3 HomoSapiens PGT LLAGIGTVPI Naive T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*02:01 B2M MHCI -11511 chip0514_661332 -2.86 12.66 Chip3 T1D_7 T1D TGTGCCGTATCGATAGGCTTTGGGAATGTGCTGCATTCCGGGTCCGGCACTCAAGTG CAVSIGFGNVLHSGSGTQV TRAV12-2*01 TRAJ41*01 1.0 10.0 TGTGCCAGCAGTTTAGATCCAGGCACCGGGGAGCTGTTTTTT CASSLDPGTGELFF TRBV12-3*01,TRBV12-4*01 TRBJ2-2*01 7.0 186.0 CAVSIGFGNVLHSGSGTQV_CASSLDPGTGELFF 1 4884 MART1-ALA MART1 0.85 269 MART1-ALA 225 4659 1 HomoSapiens MART1 ALAGIGILTV Naive T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*02:01 B2M MHCI -11512 chip0514_233191 -3.11 11.64 Chip3 T1D_7 T1D TGTGCTGTGGGTCCCCCCTACTGGAGGCTTCAAAACTATCTTT CAVGPPY??tGGFKTIF TRAV8-3*01 TRAJ9*01 11.0 1155.0 CAVGPPY??tGGFKTIF_ 1 6009 HCVNS3-1073-1081 HCV 0.8 36 NEG 217 5792 4 HCV NS3 CINGVCWTV Naive T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*02:01 B2M MHCI -11513 chip0514_636342 11.63 10.99 Chip3 T1D_7 T1D TGTGCCACCAGTGGCTGGCAGGGTTCGGAAGAGACCCAGTACTTC CATSGWQGSEETQYF TRBV24-1*01 TRBJ2-5*01 80.0 4514.0 _CATSGWQGSEETQYF 6 4769 EBV-BRLF1 EBV 0.97 1264 EBV-BRLF1 226 4543 9 EBV BRLF1 YVLDHLIVV effector memory T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*02:01 B2M MHCI -11514 chip0514_446431 8.27 9.25 Chip3 T1D_7 T1D TGCGCCAGCAGTGAGGACGGGATGAACACTGAAGCTTTCTTT CASSEDGMNTEAFF TRBV10-2*01 TRBJ1-1*01 6.0 133.0 _CASSEDGMNTEAFF 10 9839 EBV-LMP2A EBV 0.9 700 EBV-LMP2A 210 9629 8 EBV LMP2A CLGGLLTMV effector memory T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*02:01 B2M MHCI -11515 chip0514_357656 8.06 11.71 Chip3 T1D_7 T1D TGTGCCGTGAAGGGATCGGGGGACAGCTGGGGGGAATTGCAGTTT CAVKGSGDSWGELQF TRAV12-2*01 TRAJ24*01 27.0 1514.0 TGTGCCAGCAGCTTGGTGGCAGAGGACTTCAACGAGCAGTACTTC CASSLVAEDFNEQYF TRBV5-5*01 TRBJ2-7*01 8.0 286.0 CAVKGSGDSWGELQF_CASSLVAEDFNEQYF 1 5527 ZNT8-153-161 ZNT8 0.93 41 ZNT8-153-161 232 5295 7 HomoSapiens ZNT8 VVTGVLVYL transitional T cells between effector and memory populations PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*02:01 B2M MHCI -11516 chip0514_88008 12.61 7.41 Chip3 T1D_8 T1D _ 6746 5434 EBV-BLMF1 EBV 0.96 2531 EBV-BLMF1 268 5166 10 EBV BLMF1 GLCTLVAML effector memory T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*02:01 B2M MHCI -11517 chip0514_89943 9.37 9.97 Chip3 T1D_7 T1D TGTGCCGTGAAGGACACCAACAAGCTCATCTTT CAVKDTNKLIF TRAV8-1*01 TRAJ34*01 19.0 1573.0 CAVKDTNKLIF_ 1 5919 EBV-BRLF1 EBV 0.95 1264 EBV-BRLF1 221 5698 8 EBV BRLF1 YVLDHLIVV effector memory T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*02:01 B2M MHCI -11518 chip0514_324225 -1.87 7.59 Chip3 T1D_8 T1D TGTGCAATGAGTCGATCTAACTTTGGAAATGAGAAATTAACCTTT CAMSRSNFGNEKLTF TRAV12-3*01 TRAJ48*01 39.0 1301.0 CAMSRSNFGNEKLTF_ 5 6690 PGT-178 PGT 0.88 1480 PGT-178 233 6457 3 HomoSapiens PGT LLAGIGTVPI Naive T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*02:01 B2M MHCI -11519 chip0514_349990 -1.07 6.94 Chip3 T1D_7 T1D TGCAGCGCCATAACAGGGGGCACAGATACGCAGTATTTT CSAITGGTDTQYF TRBV29-1*01 TRBJ2-3*01 95.0 6307.0 _CSAITGGTDTQYF 1 6447 IGRP-211-219 IGRP 1.0 13 IGRP-211-219 206 6241 3 HomoSapiens IGRP NLFLFLFAV Naive T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*02:01 B2M MHCI -11520 chip0514_173243 13.66 10.31 Chip3 T1D_7 T1D TGTGCCAGCAGCCAAGCGACCGGCTATGGCTACACCTTC CASSQATGYGYTF TRBV3-1*01 TRBJ1-2*01 49.0 3407.0 _CASSQATGYGYTF 1 5747 EBV-BRLF1 EBV 0.88 1264 EBV-BRLF1 182 5565 12 EBV BRLF1 YVLDHLIVV effector T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*02:01 B2M MHCI -11521 chip0514_586941 0.48 8.56 Chip3 T1D_7 T1D TGTGCCAGCAGCCAGGGACAGCCAGAGCAGTACTTC CASSQGQPEQYF TRBV7-9*01 TRBJ2-7*01 48.0 2504.0 _CASSQGQPEQYF 1 8139 PGT-178 PGT 0.53 1480 PGT-178 212 7927 4 HomoSapiens PGT LLAGIGTVPI Naive T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*02:01 B2M MHCI -11522 chip0514_48723 12.67 9.72 Chip3 T1D_7 T1D TGTGCCAGCAGTTCCCTATCGGGAAGCGGTCAGCCCCAGCATTTT CASSSLSGSGQPQHF TRBV28*01 TRBJ1-5*01 4.0 119.0 _CASSSLSGSGQPQHF 23 4726 EBV-BRLF1 EBV 0.95 1264 EBV-BRLF1 222 4504 10 EBV BRLF1 YVLDHLIVV effector memory T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*02:01 B2M MHCI -11523 chip0514_294182 -0.13 6.47 Chip3 tet_neg TGCCTCCCGGAGGGGGTCACGGGTTCAACAGATTTTGCTTT CLPEGVac?GFNRFCF TRAV4*01 TRAJ21*01 22.0 1661.0 TGTGCCAGCAGCCAAGACGCGTGGGGGGCCTACGAGCAGTACTTC CASSQDAWGAYEQYF TRBV3-1*01 TRBJ2-7*01 13.0 709.0 CLPEGVac?GFNRFCF_CASSQDAWGAYEQYF 1 11583 ZNT8-314-322 ZNT8 0.76 16 ZNT8-314-322 223 11360 3 HomoSapiens ZNT8 ILSAHVATA Naive T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*02:01 B2M MHCI -11524 chip0514_449431 8.37 10.1 Chip3 T1D_7 T1D TGTGCCGTGAAGGACACCGACAAGCTCATCTTT CAVKDTDKLIF TRAV8-1*01 TRAJ34*01 15.0 1432.0 TGCGCCAGCAGCCAAGATCGGCGGGAGGGCGACACCGGGGAGCTGTTTTTT CASSQDRREGDTGELFF TRBV4-3*01 TRBJ2-2*01 3.0 46.0 CAVKDTDKLIF_CASSQDRREGDTGELFF 1 5841 EBV-BRLF1 EBV 0.95 1264 EBV-BRLF1 237 5604 8 EBV BRLF1 YVLDHLIVV effector memory T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*02:01 B2M MHCI -11525 chip0514_707034 -2.05 9.92 Chip3 T1D_8 T1D TGTGCCGTGAACATTCCAGTCATCTTT CAVNIPVIF TRAV12-2*01 TRAJ30*01 1.0 25.0 TGCAGCACTACAGGGGACTACACTGAAGCTTTCTTT CSTTGDYTEAFF TRBV29-1*01 TRBJ1-1*01 137.0 7557.0 CAVNIPVIF_CSTTGDYTEAFF 1 5894 MART1-ALA MART1 0.71 269 NEG 209 5685 3 HomoSapiens MART1 ALAGIGILTV Naive T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*02:01 B2M MHCI -11526 chip0514_612141 11.74 10.71 Chip3 T1D_7 T1D TGTGCTGTCAGCGGATCGGGAAAGCTTATCTTC CAVSGSGKLIF TRAV29/DV5*01 TRAJ23*01 3.0 138.0 TGCAGTGCGACAAAGACAGATAACTATGGCTACACCTTC CSATKTDNYGYTF TRBV20-1*01 TRBJ1-2*01 7.0 323.0 CAVSGSGKLIF_CSATKTDNYGYTF 1 5915 EBV-BRLF1 EBV 0.96 1264 EBV-BRLF1 204 5711 9 EBV BRLF1 YVLDHLIVV effector memory T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*02:01 B2M MHCI -11527 chip0514_179035 -3.77 8.81 Chip3 T1D_7 T1D TGTGCCGTGGGGGGAGGAAGCCAAGGAAATCTCATCTTT CAVGGGSQGNLIF TRAV12-2*01 TRAJ42*01 3.0 161.0 TTTGCCCGCAGTGACGCCTACAGTTTTGGCTATGGCTACACCTTC FARSDAYSFGYGYTF TRBV6-1*01 TRBJ1-2*01 4.0 524.0 CAVGGGSQGNLIF_FARSDAYSFGYGYTF 1 7826 MART1-ALA MART1 0.88 269 MART1-ALA 196 7630 2 HomoSapiens MART1 ALAGIGILTV Naive T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*02:01 B2M MHCI -11528 chip0514_67120 10.37 10.81 Chip3 T1D_7 T1D TGTGCCGTGAACGACACCGACAAGCTCATCTTT CAVNDTDKLIF TRAV8-1*01 TRAJ34*01 9.0 657.0 TGTGCCACCAGTGGCTGGCAGGGTTCGGAAGAGACCCAGTACTTC CATSGWQGSEETQYF TRBV24-1*01 TRBJ2-5*01 1.0 10.0 CAVNDTDKLIF_CATSGWQGSEETQYF 1 5451 EBV-BRLF1 EBV 0.94 1264 EBV-BRLF1 210 5241 9 EBV BRLF1 YVLDHLIVV effector memory T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*02:01 B2M MHCI -11529 chip0514_89348 5.66 11.42 Chip3 T1D_7 T1D TATGCCGTGGATAGCAGCTATAAATTGATCTTC YAVDSSYKLIF TRAV12-2*01 TRAJ12*01 6.0 835.0 TGTGCCAGCCATTCGCCAGGGGCAGAGACCCAGTACTTC CASHSPGAETQYF TRBV6-2*01,TRBV6-3*01 TRBJ2-5*01 41.0 2470.0 YAVDSSYKLIF_CASHSPGAETQYF 1 6367 MART1-ALA MART1 0.45 269 MART1-ALA 193 6174 6 HomoSapiens MART1 ALAGIGILTV central memory T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*02:01 B2M MHCI -11530 chip0514_280987 5.46 8.96 Chip3 T1D_8 T1D TGTGCAGGGACGACGGAGGATAGCAACTATCAGTTAATCTGG CAGTTEDSNYQLIW TRAV25*01 TRAJ33*01 44.0 1694.0 TGCAGTGCTAGAGATCTGAGGGCAGGACGCGCCTACGAGCAGTACTTC CSARDLRAGRAYEQYF TRBV20-1*01 TRBJ2-7*01 15.0 794.0 CAGTTEDSNYQLIW_CSARDLRAGRAYEQYF 3 5790 EBV-LMP2A EBV 1.0 700 NEG 245 5545 6 EBV LMP2A CLGGLLTMV central memory T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*02:01 B2M MHCI -11531 chip0514_465529 15.95 11.41 Chip3 T1D_7 T1D TGTGTGGTGAGCGCGGAGAACCAGGGAGGAAAGCTTATCTTC CVVSAENQGGKLIF TRAV10*01 TRAJ23*01 21.0 787.0 TGTGCCAGCAGTGTGTGGACAGGACACAATGAGCAGTTCTTC CASSVWTGHNEQFF TRBV6-4*01 TRBJ2-1*01 1.0 28.0 CVVSAENQGGKLIF_CASSVWTGHNEQFF 3 2379 EBV-BLMF1 EBV 0.82 2531 EBV-BLMF1 236 2143 12 EBV BLMF1 GLCTLVAML effector T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*02:01 B2M MHCI -11532 chip0514_369897 8.54 11.71 Chip3 T1D_7 T1D TGTGCCAGCAGCCCCGGGACAGGGGGCGCAGATACGCAGTATTTT CASSPGTGGADTQYF TRBV6-2*01,TRBV6-3*01 TRBJ2-3*01 13.0 458.0 _CASSPGTGGADTQYF 2 4440 EBV-BRLF1 EBV 1.0 1264 EBV-BRLF1 212 4228 7 EBV BRLF1 YVLDHLIVV transitional T cells between effector and memory populations PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*02:01 B2M MHCI -11533 chip0514_227563 15.87 12.16 Chip3 T1D_7 T1D TGTGCAATGAGAGATGAAGACTACAAGCTCAGCTTT CAMRDEDYKLSF TRAV14/DV4*01 TRAJ20*01 19.0 1087.0 CAMRDEDYKLSF_ 1 2616 GP160-311-320 HIV 0.5 109 NEG 212 2404 12 HIV-1 GP160 RGPGRAFVTI effector T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*02:01 B2M MHCI -11534 chip0514_672439 -1.87 9.4 Chip3 T1D_7 T1D TGTGTGGTGAACTAGGGCCCAAAATAGAGCTGGAGGCTTCAAAACTATCTTT CVVN*GPKta??gaAGGFKTIF TRAV12-1*01 TRAJ9*01 1.0 21.0 TGTGCCAGCAGCTTTTCTCCGGGACAGGGTTCAGCCGGGGAGCTGTTTTTT CASSFSPGQGSAGELFF TRBV5-6*01 TRBJ2-2*01 52.0 2152.0 CVVN*GPKta??gaAGGFKTIF_CASSFSPGQGSAGELFF 1 7425 CVB3-P3A CVB 0.64 77 CVB3-P3A 230 7195 3 CoxsackievirusB P3A GIIYIIYKL Naive T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*02:01 B2M MHCI -11535 chip0514_766274 -3.36 8.52 Chip3 T1D_7 T1D TGTGCTTATATAGGGGATAGCAACTATCAGTTAATCTGG CAYIGDSNYQLIW TRAV38-1*01 TRAJ33*01 1.0 46.0 TGTGCCAGCAGCTTGGATGGGCTAGCGGGAGACAATGAGCAGTTCTTC CASSLDGLAGDNEQFF TRBV5-4*01 TRBJ2-1*01 56.0 2251.0 CAYIGDSNYQLIW_CASSLDGLAGDNEQFF 1 6526 GP160-311-320 HIV 0.6 109 NEG 212 6314 2 HIV-1 GP160 RGPGRAFVTI Naive T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*02:01 B2M MHCI -11536 chip0514_79536 14.47 10.28 Chip3 T1D_7 T1D TGTGCAATGAACAACTTCAACAAATTTTACTTT CAMNNFNKFYF TRAV12-3*01 TRAJ21*01 10.0 839.0 CAMNNFNKFYF_ 1 5946 EBV-BRLF1 EBV 0.88 1264 EBV-BRLF1 237 5709 12 EBV BRLF1 YVLDHLIVV effector T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*02:01 B2M MHCI -11537 chip0514_685765 14.21 9.86 Chip3 T1D_7 T1D TGTGCTGTGAGAGACAGAAGTGGCTACAATAAGCTGATTTTT CAVRDRSGYNKLIF TRAV3*01 TRAJ4*01 14.0 472.0 TGTGCCAGCAGTCCCCAGACAGGGACTCAGCCCCAGCATTTT CASSPQTGTQPQHF TRBV28*01 TRBJ1-5*01 23.0 997.0 CAVRDRSGYNKLIF_CASSPQTGTQPQHF 1 4781 EBV-BRLF1 EBV 0.98 1264 EBV-BRLF1 245 4536 12 EBV BRLF1 YVLDHLIVV effector T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*02:01 B2M MHCI -11538 chip0514_53972 -3.55 8.02 Chip3 T1D_8 T1D TGTGCCCTCGATGGGGATAGCAGCTCTCTATTGTTCTTC CALDGDSSSLLFF TRAV12-2*01 TRAJ12*01 8.0 646.0 TGTGCCAGCAGCTCTCAGACAGGCGGGGAGCTGTTTTTT CASSSQTGGELFF TRBV9*01 TRBJ2-2*01 9.0 497.0 CALDGDSSSLLFF_CASSSQTGGELFF 1 5758 ZNT8-281-290 ZNT8 0.87 6 NEG 201 5557 2 HomoSapiens ZNT8 SLNYSGVKEL Naive T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*02:01 B2M MHCI -11539 chip0514_748745 -2.01 8.21 Chip3 T1D_7 T1D TGTACTGGGGGAATATCTAACTTTGGAAATGAGAGATTAACCTTT CTGGISNFGNERLTF TRAV21*01 TRAJ48*01 27.0 986.0 TGTGCCAGCAGCTCCCCCCCACCTGGACAGGTAGTAAGCACAGATACGCAGTATTTT CASSSPPPGQVVSTDTQYF TRBV11-1*01 TRBJ2-3*01 10.0 387.0 CTGGISNFGNERLTF_CASSSPPPGQVVSTDTQYF 1 7661 PGT-178 PGT 0.72 1480 PGT-178 210 7451 3 HomoSapiens PGT LLAGIGTVPI Naive T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*02:01 B2M MHCI -11540 chip0514_646056 14.29 10.29 Chip3 T1D_7 T1D TGTGCCAGCAGTTTTAATGTGGGGACCGTTCCCTACGAGCAGTACTTC CASSFNVGTVPYEQYF TRBV27*01 TRBJ2-7*01 3.0 96.0 _CASSFNVGTVPYEQYF 7 4323 EBV-BRLF1 EBV 0.78 1264 EBV-BRLF1 251 4072 12 EBV BRLF1 YVLDHLIVV effector T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*02:01 B2M MHCI -11541 chip0514_414664 8.21 9.25 Chip3 T1D_7 T1D TGTGCCGTGAAAGGCACCGACAAGCTCATCTTT CAVKGTDKLIF TRAV8-1*01 TRAJ34*01 20.0 1037.0 TGTGCCACCAGAAAACCGGGACAGGGGATCGGTGGGGCCAACGTCCTGACTTTC CATRKPGQGIGGANVLTF TRBV24-1*01 TRBJ2-6*01 18.0 669.0 CAVKGTDKLIF_CATRKPGQGIGGANVLTF 1 9122 EBV-BRLF1 EBV 0.98 1264 EBV-BRLF1 243 8879 8 EBV BRLF1 YVLDHLIVV effector memory T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*02:01 B2M MHCI -11542 chip0514_221932 -0.92 7.93 Chip3 T1D_7 T1D TGTGCTACGGCCGCGAACTATGGTGGTGCTACAAACAAGCTCATCTTT CATAANYGGATNKLIF TRAV17*01 TRAJ32*01 5.0 121.0 TGTGCCAGCAGCGTAGGAGCTGGAAACACCATATATTTT CASSVGAGNTIYF TRBV9*01 TRBJ1-3*01 55.0 3132.0 CATAANYGGATNKLIF_CASSVGAGNTIYF 1 8981 GP160-814-822 HIV 0.8 7 GP160-814-822 205 8776 3 HIV-1 GP160 LLNATDIAV Naive T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*02:01 B2M MHCI -11543 chip0514_89763 12.46 6.62 Chip3 T1D_7 T1D TGTGCCAGCAGTTCCCTATCGGGAAGCGGTCAGCCCCAGCATTTT CASSSLSGSGQPQHF TRBV28*01 TRBJ1-5*01 37.0 1390.0 _CASSSLSGSGQPQHF 23 5472 EBV-BRLF1 EBV 0.89 1264 EBV-BRLF1 221 5251 10 EBV BRLF1 YVLDHLIVV effector memory T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*02:01 B2M MHCI -11544 chip0514_412605 13.96 10.83 Chip3 T1D_7 T1D TGTGCTGTGGCTTAGCAATGCTGGCAACAACCGTAAGCTGATTTGG CAVA*QCtg??gcNNRKLIW TRAV8-3*01,TRAV2*01 TRAJ38*01 29.0 964.0 TGTGCCAGCAGCCCCCCGGGACTAATCGGTGATACGCAGTATTTT CASSPPGLIGDTQYF TRBV27*01 TRBJ2-3*01 19.0 1031.0 CAVA*QCtg??gcNNRKLIW_CASSPPGLIGDTQYF 1 3728 EBV-BRLF1 EBV 0.92 1264 NEG 224 3504 12 EBV BRLF1 YVLDHLIVV effector T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*02:01 B2M MHCI -11545 chip0514_853112 -2.46 10.84 Chip3 T1D_8 T1D TGTGCAATGAGCCTATCTAACTTTGGAAATGAGAAATTAACCTTT CAMSLSNFGNEKLTF TRAV12-3*01 TRAJ48*01 33.0 1391.0 TGCAGTGCTAAGGGGGGGGCGGGAGAGACCCAGTACTTC CSAKGGAGETQYF TRBV20-1*01 TRBJ2-5*01 33.0 2160.0 CAMSLSNFGNEKLTF_CSAKGGAGETQYF 1 4229 PGT-178 PGT 0.87 1480 PGT-178 190 4039 3 HomoSapiens PGT LLAGIGTVPI Naive T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*02:01 B2M MHCI -11546 chip0514_225713 15.93 11.93 Chip3 T1D_8 T1D TGTGCAGAGAGTAGCGGGGCCTCCGGCAAACTAATCTTT CAESSGASGKLIF TRAV5*01 TRAJ37*01 21.0 1317.0 TGTGCCTAACGAGGGGCAGGAACTGCTCTGATCTTT CA*RGAGTALIF TRAV13-1*01 TRAJ15*01 15.0 999.0 0.36 TGCAGCGTGGGGACAGGGGGCACTAATGAAAAACTGTTTTTT CSVGTGGTNEKLFF TRBV29-1*01 TRBJ1-4*01 48.0 2383.0 CAESSGASGKLIF_CSVGTGGTNEKLFF 7 2627 EBV-BLMF1 EBV 0.7 2531 NEG 253 2374 12 EBV BLMF1 GLCTLVAML effector T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*02:01 B2M MHCI -11547 chip0514_30546 11.63 7.52 Chip3 T1D_7 T1D TGTGCCGTGCCTGATAACAATGCCAGACTCATGTTT CAVPDNNARLMF TRAV8-1*01 TRAJ31*01 11.0 746.0 TGCGCCAGCAGCTTGGCCGGCGGGCAGGGCGAGCAGTACTTC CASSLAGGQGEQYF TRBV5-1*01 TRBJ2-7*01 41.0 2811.0 CAVPDNNARLMF_CASSLAGGQGEQYF 1 4335 EBV-BRLF1 EBV 0.94 1264 EBV-BRLF1 215 4120 10 EBV BRLF1 YVLDHLIVV effector memory T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*02:01 B2M MHCI -11548 chip0514_62491 5.94 12.01 Chip3 T1D_7 T1D TGTGCCAGCACGCACGGCGGGGAGCTGTTTTTT CASTHGGELFF TRBV27*01 TRBJ2-2*01 15.0 1160.0 _CASTHGGELFF 1 6566 EBV-LMP2A EBV 0.8 700 NEG 203 6363 7 EBV LMP2A CLGGLLTMV transitional T cells between effector and memory populations PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*02:01 B2M MHCI -11549 chip0514_374919 15.66 11.52 Chip3 T1D_8 T1D _ 6746 3122 EBV-BLMF1 EBV 0.96 2531 EBV-BLMF1 237 2885 12 EBV BLMF1 GLCTLVAML effector T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*02:01 B2M MHCI -11550 chip0514_300052 5.13 9.32 Chip3 T1D_7 T1D TGTGCCGCGAGGGGCGGATCTGAAAAGCTGGTCTTT CAARGGSEKLVF TRAV39*01 TRAJ57*01 7.0 596.0 TGTGCCAGCAGTGGTTACGGAACTAGCGGGAGAGTCACAGATACGCAGTATTTT CASSGYGTSGRVTDTQYF TRBV2*01 TRBJ2-3*01 70.0 2568.0 CAARGGSEKLVF_CASSGYGTSGRVTDTQYF 1 4882 ZNT8-16-24 ZNT8 0.97 39 ZNT8-16-24 229 4653 6 HomoSapiens ZNT8 KMYAFTLES central memory T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*02:01 B2M MHCI -11551 chip0514_136764 -3.51 8.96 Chip3 T1D_8 T1D TGTGCCGTGACGGACAGCAGTGCTTCCAAGATAATCTTT CAVTDSSASKIIF TRAV12-2*01 TRAJ3*01 2.0 76.0 TGTGCCAGCTCTAGCGGGAACATCTACGAGCAGTACTTC CASSSGNIYEQYF TRBV2*01 TRBJ2-7*01 20.0 1207.0 CAVTDSSASKIIF_CASSSGNIYEQYF 1 6276 MART1-ALA MART1 1.0 269 NEG 203 6073 2 HomoSapiens MART1 ALAGIGILTV Naive T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*02:01 B2M MHCI -11552 chip0514_793947 15.96 10.0 Chip3 T1D_7 T1D TGTGCCAGCAGTTCCCTATCGGGAAGCGGTCAGCCCCAGCATTTT CASSSLSGSGQPQHF TRBV28*01 TRBJ1-5*01 6.0 107.0 _CASSSLSGSGQPQHF 23 3403 EBV-BRLF1 EBV 0.93 1264 EBV-BRLF1 241 3162 12 EBV BRLF1 YVLDHLIVV effector T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*02:01 B2M MHCI -11553 chip0514_853341 0.52 8.74 Chip3 T1D_7 T1D _ 6746 7078 PGT-178 PGT 0.86 1480 PGT-178 235 6843 4 HomoSapiens PGT LLAGIGTVPI Naive T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*02:01 B2M MHCI -11554 chip0514_354446 -0.75 7.82 Chip3 T1D_7 T1D TGTGCCTGGGCCAGGGGTGGCTCCTACAATGAGCAGTTCTTC CAWARGGSYNEQFF TRBV30*01 TRBJ2-1*01 16.0 995.0 _CAWARGGSYNEQFF 1 6965 GP160-311-320 HIV 0.74 109 GP160-311-320 216 6749 4 HIV-1 GP160 RGPGRAFVTI Naive T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*02:01 B2M MHCI -11555 chip0514_350505 11.15 6.32 Chip3 T1D_7 T1D _ 6746 9281 EBV-LMP2A EBV 0.91 700 EBV-LMP2A 237 9044 10 EBV LMP2A CLGGLLTMV effector memory T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*02:01 B2M MHCI -11556 chip0514_564605 0.94 8.57 Chip3 T1D_7 T1D TGTGCTGTCAGCACCGACAAGCTCATCTTT CAVSTDKLIF TRAV20*01 TRAJ34*01 4.0 349.0 TGTGCCCTAGAGGGTAACGGGGAGCTGTTTTTT CALEGNGELFF TRBV19*01 TRBJ2-2*01 25.0 2478.0 CAVSTDKLIF_CALEGNGELFF 1 5467 M1 FLU 0.75 1250 M1 237 5230 4 InfluenzaA M1 GILGFVFTL Naive T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*02:01 B2M MHCI -11557 chip0514_235749 15.28 12.72 Chip3 T1D_7 T1D TGCAGCGTTGGGACAGGGGGAACTAATGAAAAACTGTTTTTT CSVGTGGTNEKLFF TRBV29-1*01 TRBJ1-4*01 121.0 5249.0 _CSVGTGGTNEKLFF 638 3026 EBV-BLMF1 EBV 1.0 2531 NEG 204 2822 12 EBV BLMF1 GLCTLVAML effector T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*02:01 B2M MHCI -11558 chip0514_688132 13.71 10.39 Chip3 T1D_8 T1D TGTAACAATAACCATGACATGCGCTTT CNNNHDMRF TRAV27*01 TRAJ43*01 30.0 3058.0 TGTGCCAGCGGGTTGGGACAGGGCAGCGCAGATACGCAGTATTTT CASGLGQGSADTQYF TRBV7-9*01 TRBJ2-3*01 28.0 1324.0 CNNNHDMRF_CASGLGQGSADTQYF 1 3316 EBV-BRLF1 EBV 0.97 1264 EBV-BRLF1 233 3083 12 EBV BRLF1 YVLDHLIVV effector T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*02:01 B2M MHCI -11559 chip0514_381124 16.0 11.33 Chip3 T1D_8 T1D TGTGCTCTCTATAACACCGACAAGCTCATCTTT CALYNTDKLIF TRAV9-2*01 TRAJ34*01 1.0 59.0 CGTGCCAGCAGCCCAACTAGCGGGAGCATCTACGAGCAGTACTTC RASSPTSGSIYEQYF TRBV3-1*01 TRBJ2-7*01 11.0 602.0 CALYNTDKLIF_RASSPTSGSIYEQYF 1 2298 EBV-BLMF1 EBV 0.98 2531 EBV-BLMF1 230 2068 12 EBV BLMF1 GLCTLVAML effector T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*02:01 B2M MHCI -11560 chip0514_262550 13.55 8.16 Chip3 T1D_8 T1D TGTGCTCTGAAAAACACCGACAAGCTCATCTTT CALKNTDKLIF TRAV16*01 TRAJ34*01 9.0 517.0 TGTGCCAGCAGTTTAAGTGTACTCTCCTACAATGAGCAGTTCTTC CASSLSVLSYNEQFF TRBV27*01 TRBJ2-1*01 39.0 2375.0 CALKNTDKLIF_CASSLSVLSYNEQFF 3 2388 EBV-BRLF1 EBV 0.95 1264 EBV-BRLF1 260 2128 10 EBV BRLF1 YVLDHLIVV effector memory T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*02:01 B2M MHCI -11561 chip0514_663939 15.84 11.62 Chip3 T1D_8 T1D _ 6746 3137 EBV-BRLF1 EBV 0.91 1264 EBV-BRLF1 212 2925 12 EBV BRLF1 YVLDHLIVV effector T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*02:01 B2M MHCI -11562 chip0514_583606 -2.69 11.2 Chip3 T1D_7 T1D TGCCTCGTGGACGAGAACACCGGTAACCAGTTCTATTTT CLVDENTGNQFYF TRAV4*01 TRAJ49*01 1.0 34.0 CLVDENTGNQFYF_ 1 6792 HCVNS3-1073-1081 HCV 1.0 36 HCVNS3-1073-1081 213 6579 3 HCV NS3 CINGVCWTV Naive T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*02:01 B2M MHCI -11563 chip0514_69262 5.49 8.64 Chip3 T1D_8 T1D TGTGCAGGGACGACGGAGGATAGCAACTATCAGTTAATCTGG CAGTTEDSNYQLIW TRAV25*01 TRAJ33*01 11.0 436.0 TGCAGTGCTAGAGATCTGAGGGCAGGACGCGCCTACGAGCAGTACTTC CSARDLRAGRAYEQYF TRBV20-1*01 TRBJ2-7*01 15.0 719.0 CAGTTEDSNYQLIW_CSARDLRAGRAYEQYF 3 7051 EBV-LMP2A EBV 0.7 700 EBV-LMP2A 235 6816 6 EBV LMP2A CLGGLLTMV central memory T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*02:01 B2M MHCI -11564 chip0514_850508 8.28 9.88 Chip3 T1D_7 T1D TGTGCCGTGAAGGACAAGGGCAGGCTCATCTAT CAVKDKGRLIY TRAV8-1*01 TRAJ34*01 4.0 380.0 TGTGCCAGCAGTTTATTCTCCAATGAGCAGTTCTTC CASSLFSNEQFF TRBV28*01 TRBJ2-1*01 16.0 1372.0 CAVKDKGRLIY_CASSLFSNEQFF 1 8422 EBV-BRLF1 EBV 1.0 1264 EBV-BRLF1 225 8197 8 EBV BRLF1 YVLDHLIVV effector memory T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*02:01 B2M MHCI -11565 chip0514_614759 -1.36 8.84 Chip3 T1D_7 T1D TGCGCCAGCAGCCAGTGGGACACTCACACCGGGGAGCTGTTTTTT CASSQWDTHTGELFF TRBV4-1*01 TRBJ2-2*01 33.0 1366.0 _CASSQWDTHTGELFF 1 7986 ZNT8-114-123 ZNT8 0.7 2 NEG 211 7775 4 HomoSapiens ZNT8 FLLSLFSLWL Naive T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*02:01 B2M MHCI -11566 chip0514_202912 7.68 10.58 Chip3 T1D_7 T1D TGTGCTGTCCATACTGGAGGCTTCAAAACTATCTTT CAVHTGGFKTIF TRAV20*01 TRAJ9*01 61.0 4643.0 TGTGCCAGCAGCAAAGAAGCCGAAACGGAGTACTTC CASSKEAETEYF TRBV5-4*01 TRBJ2-7*01 35.0 1638.0 CAVHTGGFKTIF_CASSKEAETEYF 1 7578 EBV-BRLF1 EBV 0.99 1264 EBV-BRLF1 207 7371 7 EBV BRLF1 YVLDHLIVV transitional T cells between effector and memory populations PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*02:01 B2M MHCI -11567 chip0514_623786 -2.53 13.59 Chip3 T1D_7 T1D TGTGCCAGCAGCCCCAAGGTAGAGTGGCAGGAGAACACTGAAGCTTTCTTT CASSPKVEWQENTEAFF TRBV5-6*01 TRBJ1-1*01 52.0 1483.0 _CASSPKVEWQENTEAFF 1 3772 PGT-178 PGT 0.8 1480 PGT-178 189 3583 1 HomoSapiens PGT LLAGIGTVPI Naive T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*02:01 B2M MHCI -11568 chip0514_36963 15.08 10.55 Chip3 T1D_8 T1D TGTGCCGTGAAGGACACCGACAAGCTCATCTTT CAVKDTDKLIF TRAV8-1*01 TRAJ34*01 15.0 1333.0 CAVKDTDKLIF_ 56 4132 EBV-BRLF1 EBV 0.93 1264 EBV-BRLF1 228 3904 12 EBV BRLF1 YVLDHLIVV effector T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*02:01 B2M MHCI -11569 chip0514_74372 0.37 4.44 Chip3 T1D_8 T1D TGTGTGGTATCCGATTCTAACGACTACAAGCTCAGCTTT CVVSDSNDYKLSF TRAV12-1*01 TRAJ20*01 8.0 461.0 TGTGCCACCAATGAAAGGGAAACAGATACGCAGTATTTT CATNERETDTQYF TRBV24-1*01 TRBJ2-3*01 2.0 28.0 CVVSDSNDYKLSF_CATNERETDTQYF 1 7226 HCVNS3-1406-1415 HCV 0.45 12 NEG 239 6987 5 HCV NS3 KLVALGINAV natural killer-like T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*02:01 B2M MHCI -11570 chip0514_41658 9.19 9.19 Chip3 T1D_7 T1D TGTGCTGTGGAGGATCAGGGACACAACTTCAACAAATTTTACTTT CAVEDQGHNFNKFYF TRAV2*01 TRAJ21*01 97.0 2785.0 TGTGCCAGCAGCTCCCAGTTCGGCGGGAAAGAGACCCAGTACTTC CASSSQFGGKETQYF TRBV7-8*01 TRBJ2-5*01 32.0 1052.0 CAVEDQGHNFNKFYF_CASSSQFGGKETQYF 2 9228 PREINS-6-14 INS 0.79 20 PREINS-6-14 235 8993 8 HomoSapiens PREINS RLLPLLALL effector memory T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*02:01 B2M MHCI -11571 chip0514_619445 5.9 9.62 Chip3 T1D_7 T1D TGTGTGGGTTCCCGTGGGGGAGGAAGCTACATACCTACATTT CVGSRGGGSYIPTF TRAV12-1*01 TRAJ6*01 13.0 472.0 TGTGCCAGCAGCCAAGATTCGAGTGAAGCTTTCTTT CASSQDSSEAFF TRBV4-2*01 TRBJ1-1*01 22.0 1076.0 CVGSRGGGSYIPTF_CASSQDSSEAFF 2 10434 EBV-LMP1-2 EBV 0.92 41 EBV-LMP1-2 222 10212 6 EBV LMP1 YLQQNWWTL central memory T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*02:01 B2M MHCI -11572 chip0514_288420 -2.08 7.64 Chip3 T1D_7 T1D TGCGCATTCATGAGGCATACCGGCACTGCCAGTAAAATCACCTTT CAFMRHTGTASKITF TRAV38-1*01 TRAJ44*01 4.0 305.0 TGCATCCTGTTAGGCTCTAACTTTGGGCCTGCGCAATTACCCTTT CILLGSNFGPAQLPF TRAV26-2*01 TRAJ48*01 4.0 145.0 0.31 CAFMRHTGTASKITF_ 1 6545 VPR-59-67 HIV 0.79 16 NEG 192 6353 3 HIV-1 VPR AIIRILQQL Naive T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*02:01 B2M MHCI -11573 chip0514_551013 9.77 11.15 Chip3 T1D_7 T1D TGTGCCGTGAAGGACACCGACAAGCTCATCTTT CAVKDTDKLIF TRAV8-1*01 TRAJ34*01 17.0 1404.0 TGTGCCACCAGTGGGACTAGCGAGGGCACAGATACGCAGTATTTT CATSGTSEGTDTQYF TRBV24-1*01 TRBJ2-3*01 18.0 664.0 CAVKDTDKLIF_CATSGTSEGTDTQYF 1 4979 EBV-BRLF1 EBV 0.98 1264 EBV-BRLF1 198 4781 9 EBV BRLF1 YVLDHLIVV effector memory T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*02:01 B2M MHCI -11574 chip0514_262941 -1.68 10.46 Chip3 T1D_7 T1D TGTGCTGTGAGCGGGGTATACAACTTCAACAAATTTTACTTT CAVSGVYNFNKFYF TRAV8-6*01 TRAJ21*01 17.0 635.0 TGTGCCAGCAGTGGGGGGGCGGGAGGGGGCTACAATGAGCAGTTCTTC CASSGGAGGGYNEQFF TRBV9*01 TRBJ2-1*01 23.0 1165.0 CAVSGVYNFNKFYF_CASSGGAGGGYNEQFF 1 6585 IGRP-152-160-WLI IGRP 0.75 27 NEG 190 6395 3 HomoSapiens IGRP FLWSVFWLI Naive T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*02:01 B2M MHCI -11575 chip0514_93234 -2.94 12.6 Chip3 T1D_7 T1D TGCATCGTCAGAGTCAAGGTCCGGGGCTGGGAGTTACCCACTCACTTTC CIVRVKVR??gAGSYPLTF TRAV26-1*01 TRAJ28*01 10.0 494.0 CIVRVKVR??gAGSYPLTF_ 1 4445 PGT-178 PGT 0.95 1480 PGT-178 189 4256 1 HomoSapiens PGT LLAGIGTVPI Naive T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*02:01 B2M MHCI -11576 chip0514_193733 14.06 9.57 Chip3 T1D_7 T1D TGTGCCAGCAGTTCCCTATCGGGAAGCGGTCAGCCCCAGCATTTT CASSSLSGSGQPQHF TRBV28*01 TRBJ1-5*01 17.0 608.0 _CASSSLSGSGQPQHF 23 4007 EBV-BRLF1 EBV 0.92 1264 EBV-BRLF1 215 3792 12 EBV BRLF1 YVLDHLIVV effector T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*02:01 B2M MHCI -11577 chip0514_277123 -0.91 6.77 Chip3 T1D_7 T1D TGCGCCAGCAGCCAAGGGGGACACTCCTACGAGCAGTACTTC CASSQGGHSYEQYF TRBV4-1*01 TRBJ2-7*01 20.0 834.0 _CASSQGGHSYEQYF 1 6890 MART1-A28L MART1 0.46 84 NEG 213 6677 3 HomoSapiens MART1 ALGIGILTV Naive T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*02:01 B2M MHCI -11578 chip0514_726182 -2.01 8.61 Chip3 T1D_8 T1D TGTGCCAGCAGCTTAGGGTGGACCGGGGAGCTGTTTTTT CASSLGWTGELFF TRBV13*01 TRBJ2-2*01 17.0 698.0 _CASSLGWTGELFF 1 5559 HCV-35-44 HCV 0.67 13 HCV-35-44 236 5323 3 HCV POL YLLPRRGPRL Naive T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*02:01 B2M MHCI -11579 chip0514_740518 -0.5 9.41 Chip3 T1D_7 T1D TGTGCAATGAGCTTATCTAACTTTGGCCTTGTGAGTTTGTCCTTT CAMSLSNFGLVSLSF TRAV12-3*01 TRAJ48*01 5.0 135.0 CAMSLSNFGLVSLSF_ 1 6772 PGT-178 PGT 0.85 1480 PGT-178 206 6566 3 HomoSapiens PGT LLAGIGTVPI Naive T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*02:01 B2M MHCI -11580 chip0514_647631 9.28 9.77 Chip3 T1D_8 T1D _ 6746 5706 EBV-BRLF1 EBV 0.91 1264 EBV-BRLF1 226 5480 8 EBV BRLF1 YVLDHLIVV effector memory T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*02:01 B2M MHCI -11581 chip0514_265967 -2.74 10.3 Chip3 T1D_7 T1D TGTGCCAGCAGCTTGGGTGGTCAGCCCCAGCATTTT CASSLGGQPQHF TRBV5-6*01 TRBJ1-5*01 17.0 690.0 _CASSLGGQPQHF 2 5732 MART1-ALA MART1 0.67 269 NEG 183 5549 2 HomoSapiens MART1 ALAGIGILTV Naive T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*02:01 B2M MHCI -11582 chip0514_350874 -3.74 9.25 Chip3 T1D_7 T1D TGTGCAATGAGGGGATCTAACTTTGGAAATGAGAAATTAACCTTT CAMRGSNFGNEKLTF TRAV12-3*01 TRAJ48*01 83.0 2779.0 TGTGCCAGCAATGGACCTACCCGCCCTCAGGACCTAGAAGAGACCCAGTACTTC CASNGPTRPQDLEETQYF TRBV2*01 TRBJ2-5*01 18.0 1194.0 CAMRGSNFGNEKLTF_CASNGPTRPQDLEETQYF 1 7010 PGT-178 PGT 0.85 1480 PGT-178 205 6805 2 HomoSapiens PGT LLAGIGTVPI Naive T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*02:01 B2M MHCI -11583 chip0514_766227 12.47 10.32 Chip3 T1D_7 T1D TGTGCCGTGAGTTCAGGATACAGCACCCTCACCTTT CAVSSGYSTLTF TRAV8-1*01 TRAJ11*01 17.0 1550.0 CAVSSGYSTLTF_ 1 4770 EBV-BRLF1 EBV 1.0 1264 EBV-BRLF1 186 4584 9 EBV BRLF1 YVLDHLIVV effector memory T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*02:01 B2M MHCI -11584 chip0514_683226 12.16 10.29 Chip3 T1D_7 T1D TGCCTCGGCCCCGGAGCCTGGGCGTTGCCCCCTGTCTTTC CLGPGAtg??ggRCPLSF TRAV4*01 TRAJ28*01 9.0 751.0 TGTGCCAGCAGCCAAGATGAGACAGGGTTTTTGGCCGGGGAGCTGTTTTTT CASSQDETGFLAGELFF TRBV14*01 TRBJ2-2*01 12.0 289.0 CLGPGAtg??ggRCPLSF_CASSQDETGFLAGELFF 1 6330 EBV-BRLF1 EBV 0.96 1264 EBV-BRLF1 227 6103 9 EBV BRLF1 YVLDHLIVV effector memory T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*02:01 B2M MHCI -11585 chip0514_28800 -0.37 7.45 Chip3 T1D_8 T1D TGTGTGGTGACCCCCTCTAACTTTGGAAATGAGAAATTAACCTTT CVVTPSNFGNEKLTF TRAV12-1*01 TRAJ48*01 16.0 608.0 TGTGCCAGCAGCTTATTAGCGGGGCTACTCTACAATGAGCAGTTCTTC CASSLLAGLLYNEQFF TRBV5-6*01 TRBJ2-1*01 90.0 4223.0 CVVTPSNFGNEKLTF_CASSLLAGLLYNEQFF 1 6783 PGT-178 PGT 0.73 1480 NEG 239 6544 3 HomoSapiens PGT LLAGIGTVPI Naive T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*02:01 B2M MHCI -11586 chip0514_567496 -2.39 9.48 Chip3 T1D_7 T1D TGCGGCACAGAGAGGGAAAACGACTACAAGCTCAGCTTT CGTERENDYKLSF TRAV30*01 TRAJ20*01 44.0 2674.0 TGTGCCAGCAGCCAACCGACAGAGAACACTGAAGCTTTCTTT CASSQPTENTEAFF TRBV7-2*01 TRBJ1-1*01 31.0 1102.0 CGTERENDYKLSF_CASSQPTENTEAFF 1 8872 GP160-311-320 HIV 0.8 109 NEG 215 8657 3 HIV-1 GP160 RGPGRAFVTI Naive T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*02:01 B2M MHCI -11587 chip0514_264901 -2.05 8.32 Chip3 T1D_7 T1D TGCGCCAGCAGCCCCAGTGGACAGGGGGCGACTTACGAGCAGTACTTC CASSPSGQGATYEQYF TRBV4-3*01 TRBJ2-7*01 49.0 2602.0 _CASSPSGQGATYEQYF 1 5536 MART1-A28L MART1 0.75 84 MART1-A28L 187 5349 4 HomoSapiens MART1 ALGIGILTV Naive T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*02:01 B2M MHCI -11588 chip0514_552243 15.83 11.43 Chip3 T1D_7 T1D TGTGCACCCAGGGGAGAGCTTACCAGAAAGTTACCTTT CAPRGEc?tYQKVTF TRAV13-1*01 TRAJ13*01 4.0 261.0 TGTGCCAGCAGTTCCCTATCGGGAAGCGGTCAGCCCCAGCATTTT CASSSLSGSGQPQHF TRBV28*01 TRBJ1-5*01 22.0 793.0 CAPRGEc?tYQKVTF_CASSSLSGSGQPQHF 1 2809 EBV-BRLF1 EBV 0.96 1264 EBV-BRLF1 231 2578 12 EBV BRLF1 YVLDHLIVV effector T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*02:01 B2M MHCI -11589 chip0514_191253 16.13 11.36 Chip3 T1D_8 T1D TGTGCAGGGCGTGGCTCTAGCAACACAGGCAAACTAATCTTT CAGRGSSNTGKLIF TRAV25*01 TRAJ37*01 9.0 472.0 TGTGCCAGCAGCCAAGAGATTACTAGCGGAGAGACCCAGTACTTC CASSQEITSGETQYF TRBV3-1*01 TRBJ2-5*01 50.0 2321.0 CAGRGSSNTGKLIF_CASSQEITSGETQYF 1 2435 EBV-BRLF1 EBV 0.93 1264 EBV-BRLF1 214 2221 12 EBV BRLF1 YVLDHLIVV effector T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*02:01 B2M MHCI -11590 chip0514_204975 9.5 9.89 Chip3 T1D_7 T1D TGTGCCACCAGTGGCTGGCAGGGTTCGGAAGAGACCCAGTACTTC CATSGWQGSEETQYF TRBV24-1*01 TRBJ2-5*01 19.0 1011.0 _CATSGWQGSEETQYF 6 4456 EBV-BRLF1 EBV 0.98 1264 EBV-BRLF1 215 4241 8 EBV BRLF1 YVLDHLIVV effector memory T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*02:01 B2M MHCI -11591 chip0514_117556 5.84 12.2 Chip3 T1D_8 T1D TGTGCCAGTAGTATCAGGAGCTCCGATACGCAGTATTTT CASSIRSSDTQYF TRBV19*01 TRBJ2-3*01 6.0 249.0 _CASSIRSSDTQYF 2 5288 M1 FLU 0.97 1250 M1 216 5072 7 InfluenzaA M1 GILGFVFTL transitional T cells between effector and memory populations PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*02:01 B2M MHCI -11592 chip0514_137699 5.3 8.92 Chip3 T1D_7 T1D TGTGCAATGAGCATATCTAACTTTGGAAATGAGAAATTAACCTTT CAMSISNFGNEKLTF TRAV12-3*01 TRAJ48*01 45.0 2031.0 TGTGCCCGCATCAGGCGGGGTTTTAGCGGGGGGCCCCAAGAGACCCAGTACTTC CARIRRGFSGGPQETQYF TRBV6-4*01 TRBJ2-5*01 9.0 231.0 CAMSISNFGNEKLTF_CARIRRGFSGGPQETQYF 1 8127 PGT-178 PGT 0.93 1480 NEG 212 7915 6 HomoSapiens PGT LLAGIGTVPI central memory T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*02:01 B2M MHCI -11593 chip0514_778146 -3.58 11.02 Chip3 T1D_8 T1D TGTGCAGAGACTTAGGTGGCGGTAGCAACTCTAAACTGACATTT CAET*VAg?tSNSKLTF TRAV13-2*01 TRAJ53*01 14.0 381.0 CAET*VAg?tSNSKLTF_ 1 4256 PREINS-2-10 INS 1.0 37 NEG 201 4055 1 HomoSapiens PREINS ALWMRLLPL Naive T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*02:01 B2M MHCI -11594 chip0514_733387 -0.94 7.22 Chip3 T1D_7 T1D TGTGCTCTAATTCGGGATAGCAGCTATAAATTGATCTTC CALIRDSSYKLIF TRAV16*01 TRAJ12*01 9.0 674.0 TGTGCCAGCAGTGACCAGGGACGGACAAGAGTCTACACCGGGGAGCTGTTTTTT CASSDQGRTRVYTGELFF TRBV2*01 TRBJ2-2*01 33.0 1075.0 CALIRDSSYKLIF_CASSDQGRTRVYTGELFF 1 9260 VPR-59-67 HIV 0.89 16 VPR-59-67 212 9048 3 HIV-1 VPR AIIRILQQL Naive T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*02:01 B2M MHCI -11595 chip0514_223322 -0.57 6.67 Chip3 T1D_7 T1D TGTGTGGTGAACCCCGGTAACCAGTTCTATTTT CVVNPGNQFYF TRAV12-1*01 TRAJ49*01 2.0 243.0 TGTGCCAGCAGCCCCCCGGTGGGTTACGAGCAGTACTTC CASSPPVGYEQYF TRBV9*01 TRBJ2-7*01 29.0 2457.0 CVVNPGNQFYF_CASSPPVGYEQYF 1 10129 GAD65-476-484 GAD65 0.63 8 GAD65-476-484 213 9916 3 HomoSapiens GAD65 ELAEYLYNI Naive T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*02:01 B2M MHCI -11596 chip0514_708156 11.88 8.26 Chip3 T1D_7 T1D TGTGGTACGGCAGGAGCTTAACGATACAGCACCACCACCTTT CGTAGA*RYSTTTF TRAV17*01 TRAJ11*01 3.0 88.0 TGTGCCAGCAGCCTCGGACTAGCGGGACTCCTACGAGCAGTACTTC CASSLGLgc??ggDSYEQYF TRBV7-2*01 TRBJ2-7*01 8.0 249.0 CGTAGA*RYSTTTF_CASSLGLgc??ggDSYEQYF 1 6770 EBV-LMP2-FLY EBV 0.95 355 EBV-LMP2-FLY 227 6543 10 EBV LMP2 FLYALALLL effector memory T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*02:01 B2M MHCI -11597 chip0514_38267 6.29 13.56 Chip3 T1D_8 T1D _ 6746 4538 M1 FLU 0.95 1250 M1 206 4332 7 InfluenzaA M1 GILGFVFTL transitional T cells between effector and memory populations PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*02:01 B2M MHCI -11598 chip0514_803126 -0.77 7.38 Chip3 T1D_7 T1D TGTGCCAGCAGCCAACTCGGGAGCGGGATGGAGGATACGCAGTATTTT CASSQLGSGMEDTQYF TRBV3-1*01 TRBJ2-3*01 25.0 1241.0 _CASSQLGSGMEDTQYF 1 6557 CVB3-P3A CVB 0.88 77 CVB3-P3A 200 6357 3 CoxsackievirusB P3A GIIYIIYKL Naive T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*02:01 B2M MHCI -11599 chip0514_644658 -2.07 9.21 Chip3 T1D_7 T1D TGTGCTTATGGGAATAACAATGACATGCGCTTT CAYGNNNDMRF TRAV38-1*01 TRAJ43*01 7.0 686.0 TGTGCCAGCAGCTCTAGCGGGAGGCCAGATACGCAGTATTTT CASSSSGRPDTQYF TRBV7-8*01 TRBJ2-3*01 23.0 1302.0 CAYGNNNDMRF_CASSSSGRPDTQYF 1 7307 MART1-27-35 MART1 0.57 7 MART1-27-35 213 7094 3 HomoSapiens MART1 AAGIGILTV Naive T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*02:01 B2M MHCI -11600 chip0514_165846 -0.27 8.21 Chip3 T1D_7 T1D TGTGCCAGCAGTCCCGGGACAGGAACCTACGAGCAGTACTTC CASSPGTGTYEQYF TRBV27*01 TRBJ2-7*01 56.0 2668.0 _CASSPGTGTYEQYF 1 5530 PGT-178 PGT 0.91 1480 PGT-178 242 5288 4 HomoSapiens PGT LLAGIGTVPI Naive T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*02:01 B2M MHCI -11601 chip0514_651184 6.47 10.02 Chip3 T1D_7 T1D _ 6746 11146 EBV-LMP2-FLY EBV 0.87 355 EBV-LMP2-FLY 201 10945 6 EBV LMP2 FLYALALLL central memory T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*02:01 B2M MHCI -11602 chip0514_329096 -1.91 9.19 Chip3 T1D_8 T1D TGTGCCGTGAACCCCGGCTTTCAGAAACTTGTATTT CAVNPGFQKLVF TRAV12-2*01 TRAJ8*01 12.0 690.0 TGCAGTGCAATGCAGGGTAGTGGCTACACCTTC CSAMQGSGYTF TRBV20-1*01 TRBJ1-2*01 11.0 1011.0 CAVNPGFQKLVF_CSAMQGSGYTF 1 6400 MART1-ALA MART1 1.0 269 NEG 197 6203 3 HomoSapiens MART1 ALAGIGILTV Naive T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*02:01 B2M MHCI -11603 chip0514_564164 11.92 7.64 Chip3 T1D_7 T1D CTGTGCCAGCAGCGGGACAGGGAGTCAGCCCCAGCATTTT LCQQRDag??ggSQPQHF TRBV6-2*01,TRBV6-3*01 TRBJ1-5*01 6.0 225.0 _LCQQRDag??ggSQPQHF 1 4224 EBV-BRLF1 EBV 0.84 1264 EBV-BRLF1 223 4001 10 EBV BRLF1 YVLDHLIVV effector memory T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*02:01 B2M MHCI -11604 chip0514_289779 -4.0 7.5 Chip3 T1D_7 T1D TGTGCCGTGAATGGTTTCTCAGGGGGTTACCAGAAAGTTACCTTT CAVNGFSGGYQKVTF TRAV8-1*01 TRAJ13*01 27.0 1087.0 TGTGCCAGCAGCCTCGAAGGGTCCTACGAGCAGTACTTC CASSLEGSYEQYF TRBV14*01 TRBJ2-7*01 25.0 1088.0 CAVNGFSGGYQKVTF_CASSLEGSYEQYF 1 8582 EBV-LMP1-1 EBV 1.0 237 EBV-LMP1-1 197 8385 2 EBV LMP1 YLLEMLWRL Naive T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*02:01 B2M MHCI -11605 chip0514_611804 4.81 11.92 Chip3 T1D_7 T1D TGTGCTCTGAGTGACTTAGATGGCCAGACGCTGCTCTTT CALSDLDGQTLLF TRAV19*01 TRAJ16*01 10.0 760.0 TGCAGTGCTAGGGGGGCTATCCACCCAACCTACGAGCAGTACTTC CSARGAIHPTYEQYF TRBV20-1*01 TRBJ2-7*01 34.0 1949.0 CALSDLDGQTLLF_CSARGAIHPTYEQYF 1 3810 PA-46-54 FLU 0.96 18 PA-46-54 194 3616 6 InfluenzaA PA FMYSDFHFI central memory T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*02:01 B2M MHCI -11606 chip0514_322942 -0.77 7.87 Chip3 T1D_7 T1D TGTGCAATGAGCTACTCTAACTTTGGAAATGAGAAATTAACCTTT CAMSYSNFGNEKLTF TRAV12-3*01 TRAJ48*01 29.0 815.0 TGTGCAAATGAGCTACTCTAACTTTGGAAATGAGAAATTAACCTTT CANELL*ct??ttGNEKLTF TRAV12-3*01 TRAJ48*01 23.0 683.0 0.37 CAMSYSNFGNEKLTF_ 1 6656 PGT-178 PGT 0.81 1480 PGT-178 214 6442 4 HomoSapiens PGT LLAGIGTVPI Naive T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*02:01 B2M MHCI -11607 chip0514_607139 6.88 10.54 Chip3 T1D_7 T1D TGTGCCGTGCACGACACCGACAAGCTCATCTTT CAVHDTDKLIF TRAV8-1*01 TRAJ34*01 2.0 127.0 TGTGCCACCAGTGGCTGGCAGGGTTCGGAAGAGACCCAGTACTTC CATSGWQGSEETQYF TRBV24-1*01 TRBJ2-5*01 2.0 29.0 CAVHDTDKLIF_CATSGWQGSEETQYF 1 5857 EBV-BRLF1 EBV 0.92 1264 EBV-BRLF1 198 5659 7 EBV BRLF1 YVLDHLIVV transitional T cells between effector and memory populations PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*02:01 B2M MHCI -11608 chip0514_124148 12.0 6.7 Chip3 T1D_7 T1D TGTGCCATGAGCTTCTCCAACTTTGGCCATGAGGCATTACCCTTT CAMSFSNFGHEALPF TRAV12-3*01 TRAJ48*01 6.0 230.0 TGCGCCAGCAGTGGGGACGGGATGAACACTGAAGCTTTCTTT CASSGDGMNTEAFF TRBV10-2*01 TRBJ1-1*01 106.0 4115.0 CAMSFSNFGHEALPF_CASSGDGMNTEAFF 1 8360 EBV-LMP2A EBV 0.89 700 EBV-LMP2A 255 8105 10 EBV LMP2A CLGGLLTMV effector memory T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*02:01 B2M MHCI -11609 chip0514_161663 15.93 10.91 Chip3 T1D_7 T1D TGTGTGGTGAGCGCGGAGAACCAGGGAGGAAAGCTTATCTTC CVVSAENQGGKLIF TRAV10*01 TRAJ23*01 38.0 1740.0 TGTGCCAGCAGTGTGTGGACAGGACACAATGAGCAGTTCTTC CASSVWTGHNEQFF TRBV6-4*01 TRBJ2-1*01 40.0 2045.0 CVVSAENQGGKLIF_CASSVWTGHNEQFF 3 3196 EBV-BLMF1 EBV 0.79 2531 EBV-BLMF1 218 2978 12 EBV BLMF1 GLCTLVAML effector T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*02:01 B2M MHCI -11610 chip0514_36532 10.6 8.04 Chip3 T1D_7 T1D TGCAGCGTTGGGTCGGGGGGCACTAATGAAAAACTGTTTTTT CSVGSGGTNEKLFF TRBV29-1*01 TRBJ1-4*01 89.0 4640.0 _CSVGSGGTNEKLFF 6 4781 EBV-BLMF1 EBV 0.88 2531 EBV-BLMF1 205 4576 10 EBV BLMF1 GLCTLVAML effector memory T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*02:01 B2M MHCI -11611 chip0514_178566 -2.07 7.4 Chip3 T1D_7 T1D TGTGCCGTGAACATGAATTCAGGAAACACACCTCTTGTCTTT CAVNMNSGNTPLVF TRAV12-2*01 TRAJ29*01 15.0 837.0 TGTGCCAGCAGTCCCCCGGGTGTAGGCAATCAGCCCCAGCATTTT CASSPPGVGNQPQHF TRBV28*01 TRBJ1-5*01 36.0 1699.0 CAVNMNSGNTPLVF_CASSPPGVGNQPQHF 1 6709 MART1-ALA MART1 0.88 269 MART1-ALA 215 6494 4 HomoSapiens MART1 ALAGIGILTV Naive T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*02:01 B2M MHCI -11612 chip0514_411440 13.69 10.16 Chip3 T1D_7 T1D TGTGCCGTGAAGGACACCGACAAGCTCATCTTT CAVKDTDKLIF TRAV8-1*01 TRAJ34*01 18.0 1508.0 TGTGCCAGCAGCCAAGTGGTGGGTCATGGCTACACCTTC CASSQVVGHGYTF TRBV3-1*01 TRBJ1-2*01 5.0 140.0 CAVKDTDKLIF_CASSQVVGHGYTF 1 4636 EBV-BRLF1 EBV 0.84 1264 EBV-BRLF1 226 4410 12 EBV BRLF1 YVLDHLIVV effector T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*02:01 B2M MHCI -11613 chip0514_767808 12.18 6.53 Chip3 T1D_7 T1D TGCAGTGCTACAGACAGTACCTACAATGAGCAGTTCTTC CSATDSTYNEQFF TRBV20-1*01 TRBJ2-1*01 11.0 643.0 _CSATDSTYNEQFF 6 6597 EBV-BRLF1 EBV 0.96 1264 EBV-BRLF1 214 6383 10 EBV BRLF1 YVLDHLIVV effector memory T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*02:01 B2M MHCI -11614 chip0514_575874 8.74 9.29 Chip3 T1D_7 T1D TGTGCTACGGACGGCGCTTCCGGATACAGCACCCTCACCTTT CATDGASGYSTLTF TRAV17*01 TRAJ11*01 2.0 27.0 CATDGASGYSTLTF_ 2 6004 EBV-LMP2-FLY EBV 1.0 355 EBV-LMP2-FLY 255 5749 8 EBV LMP2 FLYALALLL effector memory T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*02:01 B2M MHCI -11615 chip0514_679805 10.36 7.11 Chip3 T1D_7 T1D TGTGCCAGCAGTTCCCTATCGGGAAGCGGTCAGCCCCAGCATTTT CASSSLSGSGQPQHF TRBV28*01 TRBJ1-5*01 24.0 882.0 _CASSSLSGSGQPQHF 23 5537 EBV-BRLF1 EBV 0.86 1264 EBV-BRLF1 240 5297 10 EBV BRLF1 YVLDHLIVV effector memory T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*02:01 B2M MHCI -11616 chip0514_677441 13.7 11.73 Chip3 T1D_8 T1D TGTGCCAGCAGCGTGGGGGGGGCTTGGGAGCAGTACTTC CASSVGGAWEQYF TRBV27*01 TRBJ2-7*01 4.0 81.0 _CASSVGGAWEQYF 1 2852 EBV-BRLF1 EBV 0.88 1264 EBV-BRLF1 240 2612 12 EBV BRLF1 YVLDHLIVV effector T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*02:01 B2M MHCI -11617 chip0514_574341 -4.45 9.21 Chip3 T1D_7 T1D TGTGCCAGCAGCCTCCTCTACGAGCAGTACTTC CASSLLYEQYF TRBV5-6*01 TRBJ2-7*01 13.0 557.0 _CASSLLYEQYF 1 7735 MART1-ALA MART1 0.5 269 NEG 191 7544 2 HomoSapiens MART1 ALAGIGILTV Naive T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*02:01 B2M MHCI -11618 chip0514_23448 -2.44 11.4 Chip3 T1D_7 T1D TGTGCAATGAGCGCTTCTAACTTTGGAAATGAGAAATTAACCTTT CAMSASNFGNEKLTF TRAV12-3*01 TRAJ48*01 51.0 1799.0 TGTGCCAGCAGTTTATACGGACAGGGGAGGACGGACACTGAAGCTTTCTTT CASSLYGQGRTDTEAFF TRBV28*01 TRBJ1-1*01 58.0 2229.0 CAMSASNFGNEKLTF_CASSLYGQGRTDTEAFF 1 4570 PGT-178 PGT 0.56 1480 PGT-178 202 4368 4 HomoSapiens PGT LLAGIGTVPI Naive T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*02:01 B2M MHCI -11619 chip0514_239564 -1.12 8.32 Chip3 T1D_8 T1D TGCAGCTCCCCGGGACAGGGTTACAATGAGCAGTTCTTC CSSPGQGYNEQFF TRBV29-1*01 TRBJ2-1*01 87.0 7046.0 _CSSPGQGYNEQFF 1 7697 ROTA-VP2-1 ROTA 1.0 17 ROTA-VP2-1 202 7495 3 RotavirusA VP2 SLISGMWLL Naive T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*02:01 B2M MHCI -11620 chip0514_140391 -1.21 7.31 Chip3 T1D_7 T1D TGTGCCAGCAGTTTATCGGTTAACTATGGCTACACCTTC CASSLSVNYGYTF TRBV12-3*01,TRBV12-4*01 TRBJ1-2*01 20.0 1194.0 _CASSLSVNYGYTF 1 6436 GAD65-114-122 GAD65 0.4 63 NEG 184 6252 3 HomoSapiens GAD65 VMNILLQYV Naive T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*02:01 B2M MHCI -11621 chip0514_359246 -2.31 10.67 Chip3 T1D_8 T1D TGTGCCGTACCTTCAGGAAACACACCTCTTGTCTTT CAVPSGNTPLVF TRAV12-2*01 TRAJ29*01 23.0 1934.0 TGTGCCAGCTCGGGGCCACCGCACACCGGGGAGCTGTTTTTT CASSGPPHTGELFF TRBV7-7*01 TRBJ2-2*01 43.0 1257.0 CAVPSGNTPLVF_CASSGPPHTGELFF 1 4918 PGT-178 PGT 0.57 1480 PGT-178 205 4713 3 HomoSapiens PGT LLAGIGTVPI Naive T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*02:01 B2M MHCI -11622 chip0514_332656 -3.05 11.5 Chip3 T1D_7 T1D TGTGCCGTCGACATTAATGCCAGACTCATGTTT CAVDINARLMF TRAV12-2*01 TRAJ31*01 19.0 1383.0 TGTGCCACCGAGGGACAGGCTAACGAGCAGTACTTC CATEGQANEQYF TRBV6-1*01 TRBJ2-7*01 12.0 562.0 CAVDINARLMF_CATEGQANEQYF 1 5513 ZNT8-115-123 ZNT8 0.73 74 ZNT8-115-123 206 5307 4 HomoSapiens ZNT8 LLSLFSLWL Naive T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*02:01 B2M MHCI -11623 chip0514_422203 8.0 11.69 Chip3 T1D_7 T1D TGTGCCGTGCAGGCCACCGACAAGCTCATCTTT CAVQATDKLIF TRAV8-1*01 TRAJ34*01 12.0 1171.0 CAVQATDKLIF_ 1 4303 EBV-BRLF1 EBV 0.93 1264 EBV-BRLF1 202 4101 7 EBV BRLF1 YVLDHLIVV transitional T cells between effector and memory populations PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*02:01 B2M MHCI -11624 chip0514_315352 -0.84 7.94 Chip3 T1D_7 T1D _ 6746 7363 EBV-LMP2A EBV 0.46 700 NEG 199 7164 3 EBV LMP2A CLGGLLTMV Naive T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*02:01 B2M MHCI -11625 chip0514_772864 -2.18 7.74 Chip3 T1D_7 T1D TGTGCATCCGGAGGAAGCTACATACCTACATTT CASGGSYIPTF TRAV12-1*01 TRAJ6*01 2.0 35.0 TGCGCCGCATGTCCCGGGACAGAGAACACCGGGGAGCTGTTTTTT CAACPGTENTGELFF TRBV10-2*01 TRBJ2-2*01 2.0 19.0 CASGGSYIPTF_CAACPGTENTGELFF 1 7944 HCVNS3-1406-1415 HCV 0.48 12 NEG 207 7737 3 HCV NS3 KLVALGINAV Naive T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*02:01 B2M MHCI -11626 chip0514_878578 15.2 12.51 Chip3 T1D_7 T1D _ 6746 2445 EBV-BRLF1 EBV 0.82 1264 EBV-BRLF1 243 2202 12 EBV BRLF1 YVLDHLIVV effector T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*02:01 B2M MHCI -11627 chip0514_207188 -1.33 7.46 Chip3 T1D_7 T1D TGTGCCAGCAGCTTAGTTTCAGGGATCGGAAACACCATATATTTT CASSLVSGIGNTIYF TRBV11-2*01 TRBJ1-3*01 57.0 2234.0 _CASSLVSGIGNTIYF 1 9354 GP160-311-320 HIV 0.98 109 GP160-311-320 214 9140 3 HIV-1 GP160 RGPGRAFVTI Naive T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*02:01 B2M MHCI -11628 chip0514_61937 8.7 8.96 Chip3 T1D_7 T1D TGTGCTGACAGCGCATCGGGAAAGCTTATGTTC CADSASGKLMF TRAV29/DV5*01 TRAJ23*01 3.0 342.0 CADSASGKLMF_ 1 5038 EBV-BRLF1 EBV 0.94 1264 EBV-BRLF1 229 4809 8 EBV BRLF1 YVLDHLIVV effector memory T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*02:01 B2M MHCI -11629 chip0514_353092 8.05 11.64 Chip3 T1D_7 T1D TGTGCCGTGAAAGGCACCGACAAGCTCATCTTT CAVKGTDKLIF TRAV8-1*01 TRAJ34*01 51.0 5882.0 CTGTGCCACCAGAAAACCGGGCCAGGGGATCGGTGGGGCCAACGTCCTGACTTTC LCHQKTGPG??gIGGANVLTF TRBV24-1*01 TRBJ2-6*01 16.0 632.0 CAVKGTDKLIF_LCHQKTGPG??gIGGANVLTF 1 7260 EBV-BRLF1 EBV 0.93 1264 EBV-BRLF1 198 7062 7 EBV BRLF1 YVLDHLIVV transitional T cells between effector and memory populations PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*02:01 B2M MHCI -11630 chip0514_540415 6.33 11.64 Chip3 T1D_7 T1D TGCCTCGTGGGTAAGTCCCCAACTGGGGCAAACAACCTCTTCTTT CLVGKSPTGANNLFF TRAV4*01 TRAJ36*01 16.0 499.0 TGTGCCAGCAGTTTATTGCAGGGAAGAACAGATACGCAGTATTTT CASSLLQGRTDTQYF TRBV28*01 TRBJ2-3*01 70.0 1898.0 CLVGKSPTGANNLFF_CASSLLQGRTDTQYF 1 6202 HCVNS3-1073-1081 HCV 0.98 36 HCVNS3-1073-1081 242 5960 7 HCV NS3 CINGVCWTV transitional T cells between effector and memory populations PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*02:01 B2M MHCI -11631 chip0514_444898 -2.74 8.26 Chip3 T1D_8 T1D _ 6746 7622 ZNT8-314-322 ZNT8 0.54 16 NEG 210 7412 2 HomoSapiens ZNT8 ILSAHVATA Naive T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*02:01 B2M MHCI -11632 chip0514_828086 9.75 11.07 Chip3 T1D_7 T1D TGTGCTGTGACACCAAACGCCAGACTCATGTTT CAVTPNARLMF TRAV3*01 TRAJ31*01 21.0 1993.0 TGTGCCAGCAGTTTATCGGTTAGCGAATTCTACAATGAGCAGTTCTTC CASSLSVSEFYNEQFF TRBV27*01 TRBJ2-1*01 19.0 867.0 CAVTPNARLMF_CASSLSVSEFYNEQFF 1 5311 EBV-BRLF1 EBV 0.96 1264 EBV-BRLF1 223 5088 9 EBV BRLF1 YVLDHLIVV effector memory T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*02:01 B2M MHCI -11633 chip0514_726561 5.98 12.91 Chip3 T1D_7 T1D TGTGCCGTGGAGGATTTGGGCTCTAGGGGGGTTACCAGAAAGTTCCCTTT CAVEDLGSa?gGGYQKVPF TRAV2*01 TRAJ13*01 21.0 498.0 TGTGCCAGCAGCCTGACTGTTACTGAGCAGTTCTTC CASSLTVTEQFF TRBV27*01 TRBJ2-1*01 23.0 1629.0 CAVEDLGSa?gGGYQKVPF_CASSLTVTEQFF 1 6764 PA-46-54 FLU 0.92 18 PA-46-54 243 6521 7 InfluenzaA PA FMYSDFHFI transitional T cells between effector and memory populations PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*02:01 B2M MHCI -11634 chip0514_218595 -2.75 12.45 Chip3 T1D_8 T1D _ 6746 3710 PGT-178 PGT 0.93 1480 NEG 200 3510 1 HomoSapiens PGT LLAGIGTVPI Naive T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*02:01 B2M MHCI -11635 chip0514_173034 12.2 6.54 Chip3 T1D_7 T1D TGTGCTACGGTCGGGTCTTCAGGATACAGCACCCTCACCTTT CATVGSSGYSTLTF TRAV17*01 TRAJ11*01 42.0 2195.0 CATVGSSGYSTLTF_ 2 8256 EBV-LMP2-FLY EBV 0.74 355 NEG 204 8052 10 EBV LMP2 FLYALALLL effector memory T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*02:01 B2M MHCI -11636 chip0514_867728 8.98 11.26 Chip3 T1D_7 T1D _ 6746 7210 EBV-BRLF1 EBV 0.84 1264 EBV-BRLF1 204 7006 9 EBV BRLF1 YVLDHLIVV effector memory T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*02:01 B2M MHCI -11637 chip0514_540409 -1.23 7.72 Chip3 T1D_7 T1D TGTGCCAGCAGCTTTGTGGATTCACCCCTCCACTTT CASSFVDSPLHF TRBV7-9*01 TRBJ1-6*01 16.0 886.0 _CASSFVDSPLHF 1 5916 PREINS-34-42 INS 0.93 9 PREINS-34-42 180 5736 4 HomoSapiens PREINS HLVEALYLV Naive T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*02:01 B2M MHCI -11638 chip0514_148980 -1.7 9.11 Chip3 T1D_8 T1D TGTGCAATTTCTATATCTAACTTTGGAAATGAGAAATTAACCTTT CAISISNFGNEKLTF TRAV12-3*01 TRAJ48*01 19.0 930.0 TGCAGTGCTATCGGTGGTCAGATCGAAGATACGCAGTATTTT CSAIGGQIEDTQYF TRBV20-1*01 TRBJ2-3*01 7.0 393.0 CAISISNFGNEKLTF_CSAIGGQIEDTQYF 1 6398 PGT-178 PGT 1.0 1480 PGT-178 205 6193 3 HomoSapiens PGT LLAGIGTVPI Naive T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*02:01 B2M MHCI -11639 chip0514_856613 -0.46 8.5 Chip3 T1D_8 T1D TGTGCTCCGGCCCCCCTCTCTGGAGACGCTCCTGTTGTCTTT CAPAPLSGDAPVVF TRAV17*01 TRAJ29*01 13.0 1017.0 TGTGCCAGCAGCTTAGCTGGCGGTGACACTGAAGCTTTCTTT CASSLAGGDTEAFF TRBV7-9*01 TRBJ1-1*01 81.0 3352.0 CAPAPLSGDAPVVF_CASSLAGGDTEAFF 1 6149 ZNT8-153-161 ZNT8 1.0 41 ZNT8-153-161 216 5933 4 HomoSapiens ZNT8 VVTGVLVYL Naive T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*02:01 B2M MHCI -11640 chip0514_743812 0.41 8.74 Chip3 T1D_7 T1D TGTGCAATGAACAGAGATGACAAGATCATCTTT CAMNRDDKIIF TRAV12-3*01 TRAJ30*01 1.0 32.0 TGTGCCAGCAGCGAGAATGGAGGGCCGGGGGAGACCCAGTACTTC CASSENGGPGETQYF TRBV9*01 TRBJ2-5*01 18.0 956.0 CAMNRDDKIIF_CASSENGGPGETQYF 1 8700 HCVNS3-1406-1415 HCV 0.44 12 NEG 210 8490 4 HCV NS3 KLVALGINAV Naive T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*02:01 B2M MHCI -11641 chip0514_128692 5.92 9.8 Chip3 T1D_7 T1D TGCGGCACAGAGTTAATGGATAGCAGCTATAAATTGATCTTC CGTELMDSSYKLIF TRAV30*01 TRAJ12*01 3.0 65.0 CGTELMDSSYKLIF_ 1 7554 CVB3-P3A CVB 0.81 77 NEG 221 7333 6 CoxsackievirusB P3A GIIYIIYKL central memory T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*02:01 B2M MHCI -11642 chip0514_38693 16.12 10.19 Chip3 T1D_7 T1D TGCGCCAGCAGTGAATCCGGCAGAGGACAATCGGAGACCCAGTACTTC CASSESGRGQSETQYF TRBV10-1*01 TRBJ2-5*01 12.0 457.0 _CASSESGRGQSETQYF 3 4069 GP160-311-320 HIV 0.42 109 GP160-311-320 219 3850 12 HIV-1 GP160 RGPGRAFVTI effector T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*02:01 B2M MHCI -11643 chip0514_711079 -1.55 10.04 Chip3 T1D_7 T1D TGTGCCACCGGAGTTGGGAACGAGCAGTACTTC CATGVGNEQYF TRBV19*01 TRBJ2-7*01 5.0 384.0 _CATGVGNEQYF 1 8356 ZNT8-186-194 ZNT8 0.86 22 ZNT8-186-194 208 8148 3 HomoSapiens ZNT8 VAANIVLTV Naive T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*02:01 B2M MHCI -11644 chip0514_33722 14.33 10.32 Chip3 T1D_7 T1D TGTGCAATGAGAGATGAAGACTACAAGCTCAGCTTT CAMRDEDYKLSF TRAV14/DV4*01 TRAJ20*01 37.0 2966.0 TGCGCCAGCAGTGACTCCGGCCGGGGGCAATCGGAGACCCAGTACTTC CASSDSGRGQSETQYF TRBV10-1*01 TRBJ2-5*01 3.0 105.0 CAMRDEDYKLSF_CASSDSGRGQSETQYF 1 4024 GP160-311-320 HIV 0.5 109 NEG 184 3840 12 HIV-1 GP160 RGPGRAFVTI effector T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*02:01 B2M MHCI -11645 chip0514_640678 11.82 6.21 Chip3 T1D_7 T1D _ 6746 9119 EBV-BRLF1 EBV 0.97 1264 EBV-BRLF1 227 8892 10 EBV BRLF1 YVLDHLIVV effector memory T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*02:01 B2M MHCI -11646 chip0514_715838 -2.42 9.9 Chip3 T1D_7 T1D _ 6746 6223 ZNT8-145-153 ZNT8 0.84 14 ZNT8-145-153 206 6017 4 HomoSapiens ZNT8 LLSILCIWV Naive T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*02:01 B2M MHCI -11647 chip0514_816233 6.16 13.92 Chip3 T1D_8 T1D TGTGCCGTGAATGCGGGTGGAGGAAGCCAAGGAAATCTCATCTTT CAVNAGGGSQGNLIF TRAV8-1*01 TRAJ42*01 56.0 2789.0 TGTGCCAGTAGTGTTCGGAGCTCCTACGAGCAGTACTTC CASSVRSSYEQYF TRBV19*01 TRBJ2-7*01 25.0 1581.0 CAVNAGGGSQGNLIF_CASSVRSSYEQYF 1 3747 M1 FLU 0.9 1250 M1 235 3512 7 InfluenzaA M1 GILGFVFTL transitional T cells between effector and memory populations PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*02:01 B2M MHCI -11648 chip0514_622717 -2.28 9.37 Chip3 T1D_7 T1D TGTGCCGCTGCGGCGTATAACACCGACAAGCTCATCTTT CAAAAYNTDKLIF TRAV41*01 TRAJ34*01 26.0 1651.0 TGTGCCAGCGCCTTGGGCACCGGGGAGCTGTTTTTT CASALGTGELFF TRBV5-6*01 TRBJ2-2*01 3.0 63.0 CAAAAYNTDKLIF_CASALGTGELFF 1 6212 CVB3-P3A CVB 0.71 77 NEG 216 5996 3 CoxsackievirusB P3A GIIYIIYKL Naive T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*02:01 B2M MHCI -11649 chip0514_764121 15.27 10.51 Chip3 T1D_8 T1D TGTGCCGTGAAAGACACCGACAAGCTCATCTTT CAVKDTDKLIF TRAV8-1*01 TRAJ34*01 18.0 1179.0 TGTGCCAGCAGCCAAGGGGCACAAATAGGTCAGCCCCAGCATTTT CASSQGAQIGQPQHF TRBV3-1*01 TRBJ1-5*01 33.0 1388.0 CAVKDTDKLIF_CASSQGAQIGQPQHF 1 3887 EBV-BRLF1 EBV 0.74 1264 EBV-BRLF1 211 3676 12 EBV BRLF1 YVLDHLIVV effector T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*02:01 B2M MHCI -11650 chip0514_630815 12.1 7.41 Chip3 T1D_7 T1D TGCGCCAGCAGCCAAGCTGGGGGGGGAGTTCAAGATACGCAGTATTTT CASSQAGGGVQDTQYF TRBV4-1*01 TRBJ2-3*01 28.0 957.0 _CASSQAGGGVQDTQYF 1 4793 EBV-BRLF1 EBV 0.88 1264 EBV-BRLF1 212 4581 10 EBV BRLF1 YVLDHLIVV effector memory T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*02:01 B2M MHCI -11651 chip0514_579821 -0.55 8.61 Chip3 T1D_7 T1D TGTGGCCAGACTCATAACCAGGGTGGCCAGCTTATCTTC CGQTHNQGGQLIF TRAV38-1*01 TRAJ23*01 5.0 213.0 TGTGCCAGCAGCTTACCGGCCGACTCCGAAGAGACCCAGTACTTC CASSLPADSEETQYF TRBV13*01 TRBJ2-5*01 15.0 462.0 CGQTHNQGGQLIF_CASSLPADSEETQYF 1 7571 HCVNS4B-1807-1816 HCV 0.95 74 HCVNS4B-1807-1816 208 7363 4 HCV NS4B LLFNILGGWV Naive T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*02:01 B2M MHCI -11652 chip0514_197093 -2.12 12.3 Chip3 T1D_7 T1D TGTGCAATGAGCCTTGGTGGCTACAATAAGCTGATTTTT CAMSLGGYNKLIF TRAV12-3*01 TRAJ4*01 28.0 2104.0 CAMSLGGYNKLIF_ 1 4949 PGT-178 PGT 0.96 1480 PGT-178 196 4753 4 HomoSapiens PGT LLAGIGTVPI Naive T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*02:01 B2M MHCI -11653 chip0514_176498 12.66 10.24 Chip3 T1D_7 T1D _ 6746 5695 EBV-BRLF1 EBV 0.97 1264 EBV-BRLF1 200 5495 9 EBV BRLF1 YVLDHLIVV effector memory T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*02:01 B2M MHCI -11654 chip0514_561709 10.44 10.17 Chip3 T1D_7 T1D TGTGCCGTGAAAGACACCGACAAGCTCATCTTT CAVKDTDKLIF TRAV8-1*01 TRAJ34*01 8.0 651.0 CAVKDTDKLIF_ 56 5539 EBV-BRLF1 EBV 0.98 1264 EBV-BRLF1 186 5353 9 EBV BRLF1 YVLDHLIVV effector memory T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*02:01 B2M MHCI -11655 chip0514_722184 -2.38 10.89 Chip3 T1D_7 T1D TGTGCCGTGAGGGAGTCAGGAGGAAGCTACATACCTACATTT CAVRESGGSYIPTF TRAV8-1*01 TRAJ6*01 21.0 1245.0 TGCGCCAGCAATCCTGCGGCTTCAGGTAGCGAGCAGTACTTC CASNPAASGSEQYF TRBV4-3*01 TRBJ2-7*01 26.0 1987.0 CAVRESGGSYIPTF_CASNPAASGSEQYF 1 5233 PA-46-54 FLU 0.75 18 NEG 182 5051 3 InfluenzaA PA FMYSDFHFI Naive T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*02:01 B2M MHCI -11656 chip0514_393944 9.25 10.3 Chip3 T1D_7 T1D TGCAGTGCTAGAGGGTCCACCTTCTACGAGCAGTACTTC CSARGSTFYEQYF TRBV20-1*01 TRBJ2-7*01 29.0 1701.0 _CSARGSTFYEQYF 4 5203 EBV-BRLF1 EBV 1.0 1264 EBV-BRLF1 202 5001 8 EBV BRLF1 YVLDHLIVV effector memory T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*02:01 B2M MHCI -11657 chip0514_281340 9.31 9.46 Chip3 T1D_7 T1D TGTGCCAGCAGTTCCCTATCGGGAAGCGGTCAGCCCCAGCATTTT CASSSLSGSGQPQHF TRBV28*01 TRBJ1-5*01 3.0 107.0 _CASSSLSGSGQPQHF 23 6324 EBV-BRLF1 EBV 0.96 1264 EBV-BRLF1 217 6107 8 EBV BRLF1 YVLDHLIVV effector memory T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*02:01 B2M MHCI -11658 chip0514_586870 -0.42 8.83 Chip3 T1D_7 T1D TGTGCAATGGGAAGAGGTGCTGACGGACTCACCTTT CAMGRGADGLTF TRAV12-3*01 TRAJ45*01 30.0 2077.0 TGTGCCAGCAGCCAAGGGTCCTTATCAGCTAGCAATCAGCCCCAGCATTTT CASSQGSLSASNQPQHF TRBV3-1*01 TRBJ1-5*01 2.0 145.0 CAMGRGADGLTF_CASSQGSLSASNQPQHF 1 6297 PGT-178 PGT 0.9 1480 PGT-178 202 6095 4 HomoSapiens PGT LLAGIGTVPI Naive T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*02:01 B2M MHCI -11659 chip0514_372971 6.86 12.92 Chip3 T1D_7 T1D _ 6746 4577 EBV-BRLF1 EBV 0.91 1264 EBV-BRLF1 177 4400 7 EBV BRLF1 YVLDHLIVV transitional T cells between effector and memory populations PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*02:01 B2M MHCI -11660 chip0514_532550 -0.19 8.05 Chip3 T1D_7 T1D TGTGCAATGGGTATATCTAACTTTGGAAATGAGAAATTAACCTTT CAMGISNFGNEKLTF TRAV12-3*01 TRAJ48*01 31.0 1450.0 TGTGCCAGTAGTATGGAGAACAATGAGCAGTTCTTC CASSMENNEQFF TRBV19*01 TRBJ2-1*01 20.0 1039.0 CAMGISNFGNEKLTF_CASSMENNEQFF 1 7223 PGT-178 PGT 0.75 1480 PGT-178 199 7024 4 HomoSapiens PGT LLAGIGTVPI Naive T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*02:01 B2M MHCI -11661 chip0514_877889 13.58 8.73 Chip3 T1D_7 T1D TGTGCCAGCAGTTCCCTATCGGGAAGCGGTCAGCCCCAGCATTTT CASSSLSGSGQPQHF TRBV28*01 TRBJ1-5*01 31.0 1231.0 _CASSSLSGSGQPQHF 23 3570 EBV-BRLF1 EBV 0.96 1264 EBV-BRLF1 200 3370 10 EBV BRLF1 YVLDHLIVV effector memory T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*02:01 B2M MHCI -11662 chip0514_677049 -1.06 9.14 Chip3 T1D_8 T1D TGTGCAATGTCGATATCTGACTTTGGAAATGAGAAATTAACCTTT CAMSISDFGNEKLTF TRAV12-3*01 TRAJ48*01 22.0 484.0 TGTGCCAGCAGCCAAGAAGGACTAGCGATGGAGACCCAGTACTTC CASSQEGLAMETQYF TRBV7-2*01 TRBJ2-5*01 19.0 520.0 CAMSISDFGNEKLTF_CASSQEGLAMETQYF 1 6535 PGT-178 PGT 0.5 1480 PGT-178 183 6352 4 HomoSapiens PGT LLAGIGTVPI Naive T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*02:01 B2M MHCI -11663 chip0514_588183 6.76 11.28 Chip3 T1D_7 T1D TGTGCCAGCAGCTTGGTGGCAGGGGACTTCAACGAGCAGTACTTC CASSLVAGDFNEQYF TRBV5-5*01 TRBJ2-7*01 12.0 795.0 _CASSLVAGDFNEQYF 1 5748 ZNT8-153-161 ZNT8 0.89 41 ZNT8-153-161 198 5550 7 HomoSapiens ZNT8 VVTGVLVYL transitional T cells between effector and memory populations PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*02:01 B2M MHCI -11664 chip0514_534727 10.21 9.55 Chip3 T1D_8 T1D TGTGCCGTGAAGGACACCGACAAGCTCATCTTT CAVKDTDKLIF TRAV8-1*01 TRAJ34*01 6.0 710.0 TGTGCCAGCAGCCAGGCACTTATCACCGGGGAGCTGTTTTTT CASSQALITGELFF TRBV3-1*01 TRBJ2-2*01 47.0 2213.0 CAVKDTDKLIF_CASSQALITGELFF 1 4347 EBV-BRLF1 EBV 0.74 1264 NEG 210 4137 9 EBV BRLF1 YVLDHLIVV effector memory T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*02:01 B2M MHCI -11665 chip0514_830156 -2.21 10.97 Chip3 T1D_7 T1D TGTGCCGTGGAGGGCTTTCAGAAACTTGTATTT CAVEGFQKLVF TRAV12-2*01 TRAJ8*01 5.0 224.0 CAVEGFQKLVF_ 1 5672 PGT-178 PGT 0.78 1480 PGT-178 219 5453 3 HomoSapiens PGT LLAGIGTVPI Naive T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*02:01 B2M MHCI -11666 chip0514_140562 10.53 8.7 Chip3 T1D_7 T1D TGTGCCAGCAGTTCCCTATCGGGAAGCGGTCAGCCCCAGCATTTT CASSSLSGSGQPQHF TRBV28*01 TRBJ1-5*01 15.0 492.0 _CASSSLSGSGQPQHF 23 5238 EBV-BRLF1 EBV 0.92 1264 EBV-BRLF1 197 5041 10 EBV BRLF1 YVLDHLIVV effector memory T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*02:01 B2M MHCI -11667 chip0514_374331 -2.03 7.76 Chip3 T1D_7 T1D TGTCCTCCGCCAGCGGCTCTCCAGGGCGCCCCGAAGCTGGTATTT CPPPAALQGAPKLVF TRAV17*01 TRAJ54*01 4.0 92.0 CPPPAALQGAPKLVF_ 1 6763 PREINS-2-10 INS 0.73 37 NEG 190 6573 4 HomoSapiens PREINS ALWMRLLPL Naive T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*02:01 B2M MHCI -11668 chip0514_822323 -3.64 8.5 Chip3 T1D_8 T1D TGTGCAATGGATAGCAGCTATAAATTGATCTTC CAMDSSYKLIF TRAV12-3*01 TRAJ12*01 11.0 1007.0 TGTGCCAGCAGCGGTGCCGGCGGCGCGAACACCGGGGAGCTGTCTTTT CASSGAGGANTGELSF TRBV9*01 TRBJ2-2*01 7.0 387.0 CAMDSSYKLIF_CASSGAGGANTGELSF 1 5278 ZNT8-115-123 ZNT8 0.81 74 NEG 207 5071 2 HomoSapiens ZNT8 LLSLFSLWL Naive T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*02:01 B2M MHCI -11669 chip0514_376896 -0.75 7.15 Chip3 T1D_7 T1D TGTGCCGTCCGAGAAGGTGCTACAAACAAGCTCATCTTT CAVREGATNKLIF TRAV12-2*01 TRAJ32*01 13.0 725.0 TGCAGCGTTGAATCCGAGGAAACCAGATACGAGCAGTACTTC CSVESEETRYEQYF TRBV29-1*01 TRBJ2-7*01 230.0 13218.0 CAVREGATNKLIF_CSVESEETRYEQYF 1 9160 CVB3-P3A CVB 0.64 77 NEG 203 8957 3 CoxsackievirusB P3A GIIYIIYKL Naive T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*02:01 B2M MHCI -11670 chip0514_562488 -3.11 9.04 Chip3 T1D_7 T1D TGTGCCGTGAACATCTTAAGAGCTGGTGGTACTAGCTATGGAAAGCTGACATTT CAVNILRAGGTSYGKLTF TRAV12-2*01 TRAJ52*01 25.0 664.0 TGTGCCAGCAGCCCACCGGGCCAGGGTGGCTATGGCTACACCTTC CASSPPGQGGYGYTF TRBV12-3*01,TRBV12-4*01 TRBJ1-2*01 29.0 1077.0 CAVNILRAGGTSYGKLTF_CASSPPGQGGYGYTF 1 8271 INSDRIP-1-9 INS 0.54 8 NEG 187 8084 2 HomoSapiens INSDRIP MLYQHLLPL Naive T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*02:01 B2M MHCI -11671 chip0514_259393 -2.7 8.84 Chip3 T1D_7 T1D TGTGCTTTGATGTTT CALMF TRAV3*01 TRAJ15*01 13.0 1331.0 TGCAGCGTGGGGGGGGGGGGGGGGGCCGGTTACGAGCAGTACTTC CSVGGGGGAGYEQYF TRBV29-1*01 TRBJ2-7*01 15.0 546.0 CALMF_CSVGGGGGAGYEQYF 1 7115 HCVNS4B-1807-1816 HCV 0.84 74 HCVNS4B-1807-1816 212 6903 2 HCV NS4B LLFNILGGWV Naive T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*02:01 B2M MHCI -11672 chip0514_626526 -1.22 9.56 Chip3 T1D_7 T1D TGTGCAATAGGGAAATCTAACTTTGGAAATGAGAAATTAACCTTT CAIGKSNFGNEKLTF TRAV12-3*01 TRAJ48*01 80.0 2856.0 TGTGCCAGCAGTTCCCAGGAGGGGGACAATGAGCAGTTCTTC CASSSQEGDNEQFF TRBV28*01 TRBJ2-1*01 26.0 1717.0 CAIGKSNFGNEKLTF_CASSSQEGDNEQFF 1 7692 PGT-178 PGT 0.67 1480 NEG 181 7511 3 HomoSapiens PGT LLAGIGTVPI Naive T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*02:01 B2M MHCI -11673 chip0514_522661 -4.53 10.36 Chip3 T1D_7 T1D TGCGGCACACTGAACTTTGGAAATGAGAAATTAACCTTT CGTLNFGNEKLTF TRAV30*01 TRAJ48*01 25.0 1661.0 TGTGCCAGCAGCGTACAGGGCCTAGACAATTCACCCCTCCACTTT CASSVQGLDNSPLHF TRBV2*01 TRBJ1-6*01 3.0 85.0 CGTLNFGNEKLTF_CASSVQGLDNSPLHF 1 5947 PREINS-6-14 INS 0.91 20 NEG 188 5759 2 HomoSapiens PREINS RLLPLLALL Naive T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*02:01 B2M MHCI -11674 chip0514_376753 -3.07 11.69 Chip3 T1D_8 T1D TGTGCCAGCAACAAAACCCAGGGCAATCAGCCCCAGCATTTT CASNKTQGNQPQHF TRBV12-3*01,TRBV12-4*01 TRBJ1-5*01 8.0 211.0 _CASNKTQGNQPQHF 1 4128 PREINS-101-109 INS 0.69 3 NEG 193 3935 4 HomoSapiens PREINS SLYQLENYC Naive T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*02:01 B2M MHCI -11675 chip0514_444812 -3.47 10.65 Chip3 T1D_7 T1D TGTGCAATGAGCCGTTCTAACTTTGGAAATGAGAAATTAACCTTT CAMSRSNFGNEKLTF TRAV12-3*01 TRAJ48*01 18.0 630.0 TGTGCAAATGAGCCGTTCTAACTTTGGAAATGAGAAATTAACCTTT CANEPF*ct??ttGNEKLTF TRAV12-3*01 TRAJ48*01 39.0 1852.0 0.59 TGTGCCAGTAGTATTGGCGGGGCGGGGGGCACCGGGGAGCTGTTTTTT CASSIGGAGGTGELFF TRBV19*01 TRBJ2-2*01 57.0 2522.0 CAMSRSNFGNEKLTF_CASSIGGAGGTGELFF 1 5951 PGT-178 PGT 0.84 1480 PGT-178 188 5763 2 HomoSapiens PGT LLAGIGTVPI Naive T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*02:01 B2M MHCI -11676 chip0514_322862 -1.21 8.36 Chip3 T1D_7 T1D _ 6746 7411 ADH-79-88 ADH 0.79 15 ADH-79-88 198 7213 4 HomoSapiens ADH RQFGPDWIVA Naive T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*02:01 B2M MHCI -11677 chip0514_271977 11.97 12.24 Chip3 T1D_8 T1D TGTGCTCTAAAGGACACCGACAAGCTCATCTTT CALKDTDKLIF TRAV16*01 TRAJ34*01 1.0 21.0 TGTGCCACCAGTGATTGGCTTACCAATGAGCAGTTCTTC CATSDWLTNEQFF TRBV24-1*01 TRBJ2-1*01 3.0 364.0 CALKDTDKLIF_CATSDWLTNEQFF 2 2873 EBV-BRLF1 EBV 0.96 1264 EBV-BRLF1 232 2641 11 EBV BRLF1 YVLDHLIVV effector T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*02:01 B2M MHCI -11678 chip0514_34794 -0.3 8.04 Chip3 T1D_7 T1D TGTGCTTTCACCGGGTTTGGGGACTCAAATTCCGGGTATGCACTCAACTTC CAFTGFGDSNSGYALNF TRAV38-1*01 TRAJ41*01 16.0 597.0 TGTGCCAGCAGCTGGCGAGACTCCTACAATGAGCAGTTCTTC CASSWRDSYNEQFF TRBV13*01 TRBJ2-1*01 20.0 1233.0 CAFTGFGDSNSGYALNF_CASSWRDSYNEQFF 1 8658 GP160-311-320 HIV 0.52 109 NEG 190 8468 4 HIV-1 GP160 RGPGRAFVTI Naive T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*02:01 B2M MHCI -11679 chip0514_571312 -3.8 9.27 Chip3 T1D_7 T1D TGTGCCACCGAGCGGCCGTCTCGCCATCAGCCCCAGCATTTT CATERPSRHQPQHF TRBV28*01 TRBJ1-5*01 5.0 180.0 _CATERPSRHQPQHF 1 6707 M1 FLU 0.42 1250 M1 190 6517 2 InfluenzaA M1 GILGFVFTL Naive T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*02:01 B2M MHCI -11680 chip0514_585331 -3.25 9.64 Chip3 T1D_8 T1D TGTGCTGGGATCGGGAGCCCAGAAGCTGGTCTTT CAGIGag??ccQKLVF TRAV36/DV7*01 TRAJ54*01 14.0 1502.0 TGCAGTGCCTCGGACGGGAGGAACACTGAAGCTTTCTTT CSASDGRNTEAFF TRBV20-1*01 TRBJ1-1*01 35.0 1740.0 CAGIGag??ccQKLVF_CSASDGRNTEAFF 1 6037 ZNT8-115-123 ZNT8 0.89 74 NEG 206 5831 2 HomoSapiens ZNT8 LLSLFSLWL Naive T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*02:01 B2M MHCI -11681 chip0514_192003 -2.53 9.18 Chip3 T1D_7 T1D TGTGCCGTGGACCCAGGCACTGCCAGTAAACTCACCTTT CAVDPGTASKLTF TRAV39*01 TRAJ44*01 10.0 615.0 TGTGCCTGGAGTGTAGGTAGGGGCTATGAGCAGTTCTTC CAWSVGRGYEQFF TRBV30*01 TRBJ2-1*01 16.0 1195.0 CAVDPGTASKLTF_CAWSVGRGYEQFF 1 7989 GP160-814-822 HIV 0.87 7 GP160-814-822 195 7794 2 HIV-1 GP160 LLNATDIAV Naive T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*02:01 B2M MHCI -11682 chip0514_136198 12.97 11.11 Chip3 T1D_7 T1D _ 6746 4014 EBV-BRLF1 EBV 0.73 1264 NEG 196 3818 12 EBV BRLF1 YVLDHLIVV effector T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*02:01 B2M MHCI -11683 chip0514_584266 15.68 12.45 Chip3 T1D_7 T1D TGCGCCAGCAGTGAATCCGGCAGGGGACAATCGGAGACCCAGTACTTC CASSESGRGQSETQYF TRBV10-1*01 TRBJ2-5*01 20.0 603.0 _CASSESGRGQSETQYF 3 1567 GP160-311-320 HIV 0.5 109 NEG 211 1356 12 HIV-1 GP160 RGPGRAFVTI effector T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*02:01 B2M MHCI -11684 chip0514_407625 11.19 6.97 Chip3 T1D_7 T1D TGTGCCAGCAGTTTACAGGGAGGCAATACGCAGTATTTT CASSLQGGNTQYF TRBV6-5*01 TRBJ2-3*01 14.0 559.0 _CASSLQGGNTQYF 2 8289 EBV-LMP2-FLY EBV 0.83 355 EBV-LMP2-FLY 212 8077 10 EBV LMP2 FLYALALLL effector memory T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*02:01 B2M MHCI -11685 chip0514_96293 13.54 7.69 Chip3 T1D_7 T1D TGTGCCAGCAGTTCCCTATCGGGAAGCGGTCAGCCCCAGCATTTT CASSSLSGSGQPQHF TRBV28*01 TRBJ1-5*01 20.0 578.0 _CASSSLSGSGQPQHF 23 3394 EBV-BRLF1 EBV 0.94 1264 EBV-BRLF1 208 3186 10 EBV BRLF1 YVLDHLIVV effector memory T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*02:01 B2M MHCI -11686 chip0514_429359 -1.18 6.9 Chip3 T1D_7 T1D TGCGCCAGCCGCCACGAGTTATTGAGCATTGGGGAGCAGTACTTC CASRHELLSIGEQYF TRBV4-3*01 TRBJ2-7*01 8.0 216.0 _CASRHELLSIGEQYF 1 5740 PGT-178 PGT 0.82 1480 PGT-178 184 5556 3 HomoSapiens PGT LLAGIGTVPI Naive T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*02:01 B2M MHCI -11687 chip0514_225865 -1.97 9.62 Chip3 T1D_7 T1D TGCAGTGCTAGCGTCGGACCTTTAGTAGGAAACACCATATATTAT CSASVGPLVGNTIYY TRBV20-1*01 TRBJ1-3*01 2.0 85.0 _CSASVGPLVGNTIYY 1 6830 PGT-178 PGT 0.93 1480 PGT-178 206 6624 3 HomoSapiens PGT LLAGIGTVPI Naive T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*02:01 B2M MHCI -11688 chip0514_40805 -1.8 8.73 Chip3 T1D_7 T1D TGCATCCTGCGTTTTGACCGGTCACCTGTTCTATTTT CILRFD??cGHLFYF TRAV26-2*01 TRAJ49*01 6.0 214.0 CILRFD??cGHLFYF_ 1 7038 PGT-178 PGT 0.5 1480 NEG 207 6831 4 HomoSapiens PGT LLAGIGTVPI Naive T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*02:01 B2M MHCI -11689 chip0514_701530 9.13 8.49 Chip3 T1D_7 T1D TGTGCCCTTAGAGTCCCCCAGCTGGCAACCACCGTATGCTGATTTCG CALRVPQct?GNHRMLIS TRAV9-2*01 TRAJ38*01 9.0 424.0 TGTGCCAGCAGGGCGGAGGCCTGTCTGGACACCGGGGAGCTGTTTTTT CASRAEACLDTGELFF TRBV6-1*01 TRBJ2-2*01 25.0 734.0 CALRVPQct?GNHRMLIS_CASRAEACLDTGELFF 1 7729 EBV-BLMF1 EBV 0.82 2531 EBV-BLMF1 218 7511 8 EBV BLMF1 GLCTLVAML effector memory T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*02:01 B2M MHCI -11690 chip0514_248155 9.76 8.7 Chip3 T1D_7 T1D TGTGCAGAGAGTATCCCGGGGGGAAAGCTTATCTTC CAESIPGGKLIF TRAV5*01 TRAJ23*01 1.0 37.0 TGCAGCGTTGGGTCGTCGGGAACTAATGAAAAACTGTTTTTT CSVGSSGTNEKLFF TRBV29-1*01 TRBJ1-4*01 78.0 3784.0 CAESIPGGKLIF_CSVGSSGTNEKLFF 1 7837 EBV-BLMF1 EBV 0.71 2531 NEG 205 7632 8 EBV BLMF1 GLCTLVAML effector memory T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*02:01 B2M MHCI -11691 chip0514_536474 13.63 11.09 Chip3 T1D_7 T1D _ 6746 4797 EBV-BRLF1 EBV 1.0 1264 EBV-BRLF1 195 4602 7 EBV BRLF1 YVLDHLIVV transitional T cells between effector and memory populations PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*02:01 B2M MHCI -11692 chip0514_516071 5.79 12.36 Chip3 T1D_7 T1D TGTGCCAGTAGCGGACGCAGAACCGGAGAGCTGTTTTTT CASSGRRTGELFF TRBV19*01 TRBJ2-2*01 9.0 60.0 _CASSGRRTGELFF 1 6178 M1 FLU 0.89 1250 M1 202 5976 7 InfluenzaA M1 GILGFVFTL transitional T cells between effector and memory populations PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*02:01 B2M MHCI -11693 chip0514_72962 11.3 6.79 Chip3 T1D_7 T1D TGTGTGGTGCCCCGGGGGGGAGGCAGCTACATACCTACATTT CVVPRGGGSYIPTF TRAV12-1*01 TRAJ6*01 41.0 2181.0 TGTGCCAGCAGCCAAGAGGGAGGGGGCGGTTACGAGCAGTACTTC CASSQEGGGGYEQYF TRBV4-2*01 TRBJ2-7*01 21.0 1050.0 CVVPRGGGSYIPTF_CASSQEGGGGYEQYF 1 7439 EBV-LMP1-2 EBV 0.91 41 EBV-LMP1-2 196 7243 6 EBV LMP1 YLQQNWWTL central memory T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*02:01 B2M MHCI -11694 chip0514_525515 8.55 11.51 Chip3 T1D_7 T1D TGTGCTGTTCTCATGGATAGCAACTATCAGTTAATCTGG CAVLMDSNYQLIW TRAV21*01 TRAJ33*01 2.0 9.0 TGCGCCAGCAGTGGGGACGGGATGAACACTGAAGCTTTCTTT CASSGDGMNTEAFF TRBV10-2*01 TRBJ1-1*01 35.0 1813.0 CAVLMDSNYQLIW_CASSGDGMNTEAFF 20 5563 EBV-LMP2A EBV 0.95 700 EBV-LMP2A 193 5370 7 EBV LMP2A CLGGLLTMV transitional T cells between effector and memory populations PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*02:01 B2M MHCI -11695 chip0514_229047 -4.3 9.03 Chip3 T1D_7 T1D TGTGCCAGCAGTTACTATCTCCAGGCCGGGAAAACTAATGAAAAACTGTTTTTT CASSYYLQAGKTNEKLFF TRBV6-5*01 TRBJ1-4*01 20.0 425.0 _CASSYYLQAGKTNEKLFF 1 6678 GAD65-110-118 GAD65 1.0 4 GAD65-110-118 207 6471 2 HomoSapiens GAD65 FLQDVMNIL Naive T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*02:01 B2M MHCI -11696 chip0514_651034 -1.75 7.62 Chip3 T1D_7 T1D TGTGCCAGCAGTTTCCGCGGGGGGGGCGGGTTCTATGGCTACACCTTC CASSFRGGGGFYGYTF TRBV28*01 TRBJ1-2*01 13.0 553.0 _CASSFRGGGGFYGYTF 1 7084 ZNT8-281-290 ZNT8 0.62 6 NEG 227 6857 3 HomoSapiens ZNT8 SLNYSGVKEL Naive T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*02:01 B2M MHCI -11697 chip0514_608225 8.7 10.54 Chip3 T1D_7 T1D TGTGCCAGCAGTTTTAATGTGGGGACCGTTCCCTACGAGCAGTACTTC CASSFNVGTVPYEQYF TRBV27*01 TRBJ2-7*01 24.0 1359.0 _CASSFNVGTVPYEQYF 7 6161 EBV-BRLF1 EBV 1.0 1264 NEG 201 5960 8 EBV BRLF1 YVLDHLIVV effector memory T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*02:01 B2M MHCI -11698 chip0514_585683 15.69 10.29 Chip3 T1D_7 T1D TGTGCCAGCAGTTCCTTTCACATACAGGGGGGCTACGAGCAGTACTTC CASSSFHIQGGYEQYF TRBV28*01 TRBJ2-7*01 64.0 2657.0 _CASSSFHIQGGYEQYF 5 4625 IGRP-265-273 IGRP 0.93 34 NEG 197 4428 12 HomoSapiens IGRP VLFGLGFAI effector T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*02:01 B2M MHCI -11699 chip0514_36322 10.96 10.81 Chip3 T1D_8 T1D TGTGCCAGCCGGGCCCTCCTCGGGAGCAATCAGCCCCAGCATTTT CASRALLGSNQPQHF TRBV19*01 TRBJ1-5*01 35.0 1221.0 _CASRALLGSNQPQHF 8 3668 EBV-BRLF1 EBV 0.87 1264 EBV-BRLF1 234 3434 9 EBV BRLF1 YVLDHLIVV effector memory T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*02:01 B2M MHCI -11700 chip0514_68042 -3.62 12.35 Chip3 T1D_7 T1D TGTGCCATCAGTGAGTCCATGGGAAATCAGCCCCAGCATTTT CAISESMGNQPQHF TRBV10-3*01 TRBJ1-5*01 2.0 10.0 _CAISESMGNQPQHF 1 5187 GAD65-114-122 GAD65 0.65 63 GAD65-114-122 178 5009 1 HomoSapiens GAD65 VMNILLQYV Naive T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*02:01 B2M MHCI -11701 chip0514_229726 4.85 11.51 Chip3 T1D_7 T1D TGTGCCGTTTCGATAGGCTTT CAVSIGF TRAV12-2*01 TRAJ34*01 5.0 28.0 TGTGCCAGCAGCTTGGGACAGGGGGTTAATGGCTACACCTTC CASSLGQGVNGYTF TRBV5-6*01 TRBJ1-2*01 16.0 728.0 CAVSIGF_CASSLGQGVNGYTF 1 4832 MART1-ALA MART1 0.97 269 MART1-ALA 200 4632 6 HomoSapiens MART1 ALAGIGILTV central memory T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*02:01 B2M MHCI -11702 chip0514_689792 -2.34 15.46 Chip3 T1D_7 T1D TGTGGTGCTGACGGACTCCCCTTT CGADGLPF TRAV12-3*01 TRAJ45*01 1.0 30.0 TGTGCCAGCAGTTGGGGGCCAGGGGAGCTGTTTTTT CASSWGPGELFF TRBV2*01 TRBJ2-2*01 3.0 75.0 CGADGLPF_CASSWGPGELFF 1 2418 PGT-178 PGT 0.73 1480 PGT-178 208 2210 1 HomoSapiens PGT LLAGIGTVPI Naive T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*02:01 B2M MHCI -11703 chip0514_875326 9.09 9.28 Chip3 T1D_7 T1D TGTGCCGTGAAGAACACCGACAAGCTCATCTTT CAVKNTDKLIF TRAV8-1*01 TRAJ34*01 6.0 354.0 TGTGCCAGCAGCCAAGATGAGACAGGGTTTTTGGCCGGGGAGCTGTTTTTT CASSQDETGFLAGELFF TRBV14*01 TRBJ2-2*01 5.0 136.0 CAVKNTDKLIF_CASSQDETGFLAGELFF 2 3486 EBV-BRLF1 EBV 0.83 1264 EBV-BRLF1 210 3276 8 EBV BRLF1 YVLDHLIVV effector memory T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*02:01 B2M MHCI -11704 chip0514_344859 -4.34 9.17 Chip3 T1D_7 T1D TGTGCAATGACTTTATCTAACTTTGGAAATGAGAAATTAACCTTT CAMTLSNFGNEKLTF TRAV12-3*01 TRAJ48*01 42.0 1430.0 TGTGCCAGCAGCACCCCTAGCGGAGAGGATCAAGAGACCCAGTACTTC CASSTPSGEDQETQYF TRBV28*01 TRBJ2-5*01 1.0 31.0 CAMTLSNFGNEKLTF_CASSTPSGEDQETQYF 1 6482 PGT-178 PGT 0.91 1480 PGT-178 169 6313 2 HomoSapiens PGT LLAGIGTVPI Naive T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*02:01 B2M MHCI -11705 chip0514_336972 -1.73 8.23 Chip3 T1D_8 T1D TGTGGGAGGAACAATGACATGCGCTTT CGRNNDMRF TRAV12-2*01 TRAJ43*01 3.0 247.0 TGTGCCAGCAGCTTTCCACAGGGAGCGGATGGCTACACCTTC CASSFPQGADGYTF TRBV11-1*01 TRBJ1-2*01 21.0 1091.0 CGRNNDMRF_CASSFPQGADGYTF 1 6281 MART1-A27L MART1 0.46 16 NEG 232 6049 3 HomoSapiens MART1 ELAGIGILTV Naive T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*02:01 B2M MHCI -11706 chip0514_236285 11.66 12.56 Chip3 T1D_7 T1D TGTGCAGATGATAACAATGCCAGACTCATGTTT CADDNNARLMF TRAV5*01 TRAJ31*01 2.0 10.0 CADDNNARLMF_ 1 3267 EBV-BLMF1 EBV 1.0 2531 NEG 195 3072 11 EBV BLMF1 GLCTLVAML effector T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*02:01 B2M MHCI -11707 chip0514_877111 -3.3 8.2 Chip3 T1D_7 T1D TGCGCCAGCAGCTTGGAGTGGCCCATGAACACTGAAGCTTTCTTT CASSLEWPMNTEAFF TRBV5-1*01 TRBJ1-1*01 65.0 2393.0 _CASSLEWPMNTEAFF 1 7937 HCVNS4B-1807-1816 HCV 0.76 74 NEG 187 7750 2 HCV NS4B LLFNILGGWV Naive T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*02:01 B2M MHCI -11708 chip0514_787926 -0.19 6.75 Chip3 T1D_7 T1D TGTGCAGCAAGCGCTGGGGCTGGGAGTTACCAACTCACTTTC CAASAGAGSYQLTF TRAV29/DV5*01 TRAJ28*01 5.0 225.0 TGTGCCAGCAGGAGTAGCGCGGGAGGGCCATTGTACACCGGGGAGCTGTTTTTT CASRSSAGGPLYTGELFF TRBV28*01 TRBJ2-2*01 12.0 398.0 CAASAGAGSYQLTF_CASRSSAGGPLYTGELFF 1 7177 PTPRN-805-813 PTPRN 0.98 11 PTPRN-805-813 201 6976 3 HomoSapiens PTPRN VIVMLTPLV Naive T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*02:01 B2M MHCI -11709 chip0514_231300 -4.41 10.65 Chip3 T1D_7 T1D TGTGCAATGAGGCTATCTAACTTTGGAAATGAGAAATTAACCTTT CAMRLSNFGNEKLTF TRAV12-3*01 TRAJ48*01 58.0 1662.0 TGTGCTGTGAGAGATCCTAAGGGGTCTAGCAACACAGGCAAACTAATCTTT CAVRDPKGSSNTGKLIF TRAV1-2*01 TRAJ37*01 40.0 1489.0 0.32 CAMRLSNFGNEKLTF_ 2 6678 PGT-178 PGT 0.93 1480 PGT-178 203 6475 2 HomoSapiens PGT LLAGIGTVPI Naive T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*02:01 B2M MHCI -11710 chip0514_91644 -3.25 8.43 Chip3 T1D_7 T1D TGTGCCAGCAGCCAACCTAGCGTACTCACAGATACGCAGTATTTT CASSQPSVLTDTQYF TRBV14*01 TRBJ2-3*01 13.0 343.0 _CASSQPSVLTDTQYF 1 7887 GP160-311-320 HIV 0.7 109 GP160-311-320 222 7665 2 HIV-1 GP160 RGPGRAFVTI Naive T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*02:01 B2M MHCI -11711 chip0514_97744 0.34 5.65 Chip3 T1D_7 T1D TGTGTGGTGACCCTATCTAACTTTGGAAATGAGAAATTAACCTTT CVVTLSNFGNEKLTF TRAV12-1*01 TRAJ48*01 23.0 505.0 TGCGCCAGCAGCCCCCCTAGCGGGAGGGCCGGAGACCCAGTACTTC CASSPPSgg??gaGPETQYF TRBV4-1*01 TRBJ2-5*01 14.0 854.0 CVVTLSNFGNEKLTF_CASSPPSgg??gaGPETQYF 1 9355 PGT-178 PGT 0.67 1480 PGT-178 201 9154 5 HomoSapiens PGT LLAGIGTVPI natural killer-like T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*02:01 B2M MHCI -11712 chip0514_205030 0.3 8.66 Chip3 T1D_7 T1D TGTGCCAGCAGCCAAGACCCCTTAGCGGGGGATAACACCGGGGAGCTGTTTTTT CASSQDPLAGDNTGELFF TRBV3-1*01 TRBJ2-2*01 4.0 80.0 _CASSQDPLAGDNTGELFF 1 6871 PGT-178 PGT 0.78 1480 PGT-178 175 6696 4 HomoSapiens PGT LLAGIGTVPI Naive T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*02:01 B2M MHCI -11713 chip0514_616176 -1.37 7.61 Chip3 T1D_8 T1D TGTGCCAGCAGTGAAAAGGGGGGAGAGACCCAGTACTTC CASSEKGGETQYF TRBV2*01 TRBJ2-5*01 7.0 481.0 _CASSEKGGETQYF 1 6097 ZNT8-186-194 ZNT8 0.88 22 NEG 214 5883 4 HomoSapiens ZNT8 VAANIVLTV Naive T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*02:01 B2M MHCI -11714 chip0514_880604 15.08 9.03 Chip3 T1D_7 T1D TGTGCCGTGAAGGACACCGACAAGCTCATCTTT CAVKDTDKLIF TRAV8-3*01,TRAV8-1*01 TRAJ34*01 2.0 25.0 TGTGCCAGTAGCCCCCTGCTGGGGAGCAATCAGCCCCAGCATTTT CASSPLLGSNQPQHF TRBV19*01 TRBJ1-5*01 5.0 130.0 CAVKDTDKLIF_CASSPLLGSNQPQHF 3 3708 EBV-BRLF1 EBV 0.96 1264 EBV-BRLF1 178 3530 12 EBV BRLF1 YVLDHLIVV effector T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*02:01 B2M MHCI -11715 chip0514_100452 -3.61 8.79 Chip3 T1D_7 T1D TGTGCCGTGAGGGGAGGAAGCCAAGGAAATCTCATCTTT CAVRGGSQGNLIF TRAV12-2*01 TRAJ42*01 52.0 2467.0 CAVRGGSQGNLIF_ 1 6388 EBV-LMP1-2 EBV 0.67 41 NEG 201 6187 2 EBV LMP1 YLQQNWWTL Naive T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*02:01 B2M MHCI -11716 chip0514_754986 15.47 10.59 Chip3 T1D_7 T1D TGTGCCGTCTATTCCGGGTATGCACTCAACTTC CAVYSGYALNF TRAV8-1*01 TRAJ41*01 24.0 2577.0 TGTGCCAGCAGCCCCGGGACAGGGGGCGCAGATACGCAGTATTTT CASSPGTGGADTQYF TRBV6-2*01,TRBV6-3*01 TRBJ2-3*01 31.0 1560.0 CAVYSGYALNF_CASSPGTGGADTQYF 1 5396 EBV-BRLF1 EBV 0.91 1264 EBV-BRLF1 195 5201 12 EBV BRLF1 YVLDHLIVV effector T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*02:01 B2M MHCI -11717 chip0514_793001 -4.34 9.31 Chip3 T1D_7 T1D TGTGCAATGAGTTTAGCTAACTTTGGAAATGAGAAATTAACCTTT CAMSLANFGNEKLTF TRAV12-3*01 TRAJ48*01 9.0 301.0 TGTGCTGTGAATTCAGGGAGCCCAGAAGCTGGTATTT CAVNSG??aAQKLVF TRAV36/DV7*01 TRAJ54*01 9.0 600.0 0.41 TGTGCCAGCAGCGGCCGGGACAGGAGTGGAAACACCATATATTTT CASSGRDRSGNTIYF TRBV5-6*01 TRBJ1-3*01 23.0 703.0 CAMSLANFGNEKLTF_CASSGRDRSGNTIYF 1 8027 PGT-178 PGT 0.71 1480 PGT-178 182 7845 2 HomoSapiens PGT LLAGIGTVPI Naive T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*02:01 B2M MHCI -11718 chip0514_451553 0.33 9.01 Chip3 T1D_7 T1D _ 6746 5691 PGT-178 PGT 0.74 1480 PGT-178 187 5504 4 HomoSapiens PGT LLAGIGTVPI Naive T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*02:01 B2M MHCI -11719 chip0514_399922 -1.28 9.38 Chip3 T1D_7 T1D TGTGCAATGGGTCGATCTAACTTTGGAAATGAGAAATTAACCTTT CAMGRSNFGNEKLTF TRAV12-3*01 TRAJ48*01 31.0 1227.0 TGTGCCAGCAGCTCCACTCAACGGGACCACAGTACAGATACGCAGTATTTT CASSSTQRDHSTDTQYF TRBV13*01 TRBJ2-3*01 26.0 1170.0 CAMGRSNFGNEKLTF_CASSSTQRDHSTDTQYF 1 7091 PGT-178 PGT 0.79 1480 PGT-178 220 6871 3 HomoSapiens PGT LLAGIGTVPI Naive T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*02:01 B2M MHCI -11720 chip0514_17809 13.58 10.01 Chip3 T1D_7 T1D TGTGCCGTGAAGGACACCGACAAGCTCATCTTT CAVKDTDKLIF TRAV8-1*01 TRAJ34*01 9.0 802.0 TGCAGTGCTACAGACAGTACCTACAATGAGCAGTTCTTC CSATDSTYNEQFF TRBV20-1*01 TRBJ2-1*01 22.0 1673.0 CAVKDTDKLIF_CSATDSTYNEQFF 8 8370 EBV-BRLF1 EBV 0.96 1264 EBV-BRLF1 189 8181 12 EBV BRLF1 YVLDHLIVV effector T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*02:01 B2M MHCI -11721 chip0514_721568 -2.76 8.23 Chip3 T1D_7 T1D TGTGCTGTCAGATGGCACACCGGTAACCAGTTCTATTTT CAVRWHTGNQFYF TRAV41*01 TRAJ49*01 5.0 292.0 TGCAGTGCTACGGACACCCGCGACAGTCTTCAATCCAATGAAAAACTGTTTTTT CSATDTRDSLQSNEKLFF TRBV20-1*01 TRBJ1-4*01 41.0 1825.0 CAVRWHTGNQFYF_CSATDTRDSLQSNEKLFF 1 6970 PGT-178 PGT 0.87 1480 PGT-178 202 6768 2 HomoSapiens PGT LLAGIGTVPI Naive T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*02:01 B2M MHCI -11722 chip0514_249771 -0.51 10.42 Chip3 T1D_7 T1D TGTGCAATGAGCCTTTCTAACTTTGGACATGAGAAATTAACCTTT CAMSLSNFGHEKLTF TRAV12-3*01 TRAJ48*01 51.0 1168.0 CAMSLSNFGHEKLTF_ 1 5893 PGT-178 PGT 0.97 1480 PGT-178 205 5688 3 HomoSapiens PGT LLAGIGTVPI Naive T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*02:01 B2M MHCI -11723 chip0514_60570 -2.67 12.79 Chip3 T1D_8 T1D TGCAGTGCTACCGGGGTAGGGGTCGACGAATTAGGTTTCGACACTGAAGCTTTCTTT CSATGVGVDELGFDTEAFF TRBV20-1*01 TRBJ1-1*01 1.0 26.0 _CSATGVGVDELGFDTEAFF 1 3890 PGT-178 PGT 0.82 1480 PGT-178 201 3689 1 HomoSapiens PGT LLAGIGTVPI Naive T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*02:01 B2M MHCI -11724 chip0514_33498 13.97 8.63 Chip3 T1D_7 T1D TGTGCCGTGAAGGACACCGACAAGCTCATCTTT CAVKDTDKLIF TRAV8-1*01 TRAJ34*01 13.0 927.0 TGTGCCACCAGTGAATGGACTAGCGGGAGGGGTGGGGATGAGCAGTTCTTC CATSEWTSGRGGDEQFF TRBV24-1*01 TRBJ2-1*01 21.0 1261.0 CAVKDTDKLIF_CATSEWTSGRGGDEQFF 1 2999 EBV-BRLF1 EBV 1.0 1264 EBV-BRLF1 209 2790 12 EBV BRLF1 YVLDHLIVV effector T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*02:01 B2M MHCI -11725 chip0514_521769 -3.06 10.2 Chip3 T1D_8 T1D TGTGCCTTTAATAATGCAGGCAACATGCTCACCTTT CAFNNAGNMLTF TRAV24*01 TRAJ39*01 39.0 3745.0 TGTGCCAGCAGTTTAGTCGGGGAGCTGTTTTTT CASSLVGELFF TRBV12-3*01,TRBV12-4*01 TRBJ2-2*01 28.0 1856.0 CAFNNAGNMLTF_CASSLVGELFF 1 4779 ZNT8-186-194 ZNT8 0.97 22 ZNT8-186-194 198 4581 2 HomoSapiens ZNT8 VAANIVLTV Naive T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*02:01 B2M MHCI -11726 chip0514_345170 -2.9 13.86 Chip3 T1D_7 T1D TGTGCCAGCAGTTGGATGATCAACTCCTACAATGAGCAGTTCTTC CASSWMINSYNEQFF TRBV28*01 TRBJ2-1*01 29.0 1285.0 _CASSWMINSYNEQFF 1 4067 IGRP-152-160-WLI IGRP 0.94 27 IGRP-152-160-WLI 170 3897 1 HomoSapiens IGRP FLWSVFWLI Naive T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*02:01 B2M MHCI -11727 chip0514_752363 -4.85 9.19 Chip3 T1D_7 T1D TGTGCCAGCAGCAGCACGACGACAGGAAGGTTACTCGGGGAGCTGTTTTTT CASSSTTTGRLLGELFF TRBV28*01 TRBJ2-2*01 43.0 1088.0 _CASSSTTTGRLLGELFF 1 6476 PGT-178 PGT 0.78 1480 PGT-178 188 6288 2 HomoSapiens PGT LLAGIGTVPI Naive T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*02:01 B2M MHCI -11728 chip0514_479100 -1.32 11.46 Chip3 T1D_7 T1D TGTGCCAGCAGCGATGAGGGGGCGCGCACTGAAGCTTTCTTT CASSDEGARTEAFF TRBV5-4*01 TRBJ1-1*01 21.0 912.0 _CASSDEGARTEAFF 1 5375 PGT-178 PGT 0.85 1480 PGT-178 207 5168 3 HomoSapiens PGT LLAGIGTVPI Naive T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*02:01 B2M MHCI -11729 chip0514_618903 4.96 9.63 Chip3 T1D_8 T1D TGTGCTACGCAGGGGAATTCAGGATACAGCACCCTCACCTTT CATQGNSGYSTLTF TRAV17*01 TRAJ11*01 51.0 1891.0 CATQGNSGYSTLTF_ 1 4645 EBV-LMP2-FLY EBV 0.94 355 EBV-LMP2-FLY 190 4455 6 EBV LMP2 FLYALALLL central memory T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*02:01 B2M MHCI -11730 chip0514_143557 9.46 10.23 Chip3 T1D_8 T1D _ 6746 4180 EBV-BRLF1 EBV 0.99 1264 EBV-BRLF1 243 3937 9 EBV BRLF1 YVLDHLIVV effector memory T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*02:01 B2M MHCI -11731 chip0514_390916 -1.39 7.09 Chip3 T1D_7 T1D TGTGCTGTGCCCCGAGATGACAAGATCATCTTT CAVPRDDKIIF TRAV20*01 TRAJ30*01 11.0 917.0 TGCAGCGTAGGGACAGGGCTGTCCTACGAGCAGTACTTC CSVGTGLSYEQYF TRBV29-1*01 TRBJ2-7*01 69.0 4509.0 CAVPRDDKIIF_CSVGTGLSYEQYF 1 6076 ZNT8-173-181 ZNT8 0.81 27 ZNT8-173-181 195 5881 3 HomoSapiens ZNT8 IQATVMIIV Naive T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*02:01 B2M MHCI -11732 chip0514_101795 -0.55 8.88 Chip3 T1D_7 T1D TGTGCAATGAGTCGCTCTAACTTTGGAAATGAGAAATTAACCTTT CAMSRSNFGNEKLTF TRAV12-3*01 TRAJ48*01 22.0 1032.0 TGTGCCAGCAGCCCGACAGGGGAGGGACAGCCCCAGCATTTT CASSPTGEGQPQHF TRBV7-8*01 TRBJ1-5*01 29.0 1358.0 CAMSRSNFGNEKLTF_CASSPTGEGQPQHF 1 6627 PGT-178 PGT 0.9 1480 PGT-178 187 6440 4 HomoSapiens PGT LLAGIGTVPI Naive T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*02:01 B2M MHCI -11733 chip0514_195444 7.9 9.09 Chip3 T1D_7 T1D TGTGCCGTGAAGGGATCGGGGGCCAGCTGGGGGAAATCGCCGTTT CAVKGSGASWGKSPF TRAV12-2*01 TRAJ24*01 4.0 236.0 TGTGCCAGCAGCTTGGTGGCAGGGGACTTCAACGAGCAGTACTGC CASSLVAGDFNEQYC TRBV5-5*01 TRBJ2-7*01 12.0 528.0 CAVKGSGASWGKSPF_CASSLVAGDFNEQYC 1 9177 ZNT8-153-161 ZNT8 1.0 41 ZNT8-153-161 205 8972 8 HomoSapiens ZNT8 VVTGVLVYL effector memory T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*02:01 B2M MHCI -11734 chip0514_790964 -0.79 8.3 Chip3 T1D_7 T1D TGTGCCACTGACGGGGCAGCGCTAGCGGGACTAGCGGGTAACACAGATACGCAGTATTTT CATDGAALAGLAGNTDTQYF TRBV11-1*01 TRBJ2-3*01 17.0 585.0 _CATDGAALAGLAGNTDTQYF 1 6181 GP160-311-320 HIV 0.79 109 GP160-311-320 191 5990 4 HIV-1 GP160 RGPGRAFVTI Naive T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*02:01 B2M MHCI -11735 chip0514_117740 -5.01 9.47 Chip3 T1D_7 T1D TGTCCTCCGAGCGAGCAGGGGCTGCCCTTCCAGTAACCTCCCCTTT CPPSEQGct??gcPSSNLPF TRAV19*01 TRAJ44*01 2.0 14.0 TGTGCCCGCAGTACAGGGGGAAGGGGTGCAGCTTTCTTT CARSTGGRGAAFF TRBV28*01 TRBJ1-1*01 7.0 469.0 CPPSEQGct??gcPSSNLPF_CARSTGGRGAAFF 1 6095 ZNT8-165-173 ZNT8 0.89 11 ZNT8-165-173 193 5902 2 HomoSapiens ZNT8 RLLYPDYQI Naive T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*02:01 B2M MHCI -11736 chip0514_229082 8.93 8.69 Chip3 T1D_7 T1D TGTGCTGTCCTCCTGGATAGCAACTATCAGTTAATCTGG CAVLLDSNYQLIW TRAV12-3*01 TRAJ33*01 9.0 725.0 TGCGCCAGCAGTGAGGACGGGATGAACACTGAAGCTTTCTTT CASSEDGMNTEAFF TRBV10-2*01 TRBJ1-1*01 117.0 5269.0 CAVLLDSNYQLIW_CASSEDGMNTEAFF 4 10369 EBV-LMP2A EBV 0.95 700 EBV-LMP2A 209 10160 8 EBV LMP2A CLGGLLTMV effector memory T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*02:01 B2M MHCI -11737 chip0514_769307 15.59 11.44 Chip3 T1D_7 T1D TGTGCCGTGAGTTCAGGATACAGCACCCTCACCTTT CAVSSGYSTLTF TRAV8-1*01 TRAJ11*01 23.0 2027.0 TGTGCCAGCAGTTCCCTATCGGGAAGCGGTCAGCCCCAGCATTTT CASSSLSGSGQPQHF TRBV28*01 TRBJ1-5*01 19.0 727.0 CAVSSGYSTLTF_CASSSLSGSGQPQHF 12 3428 EBV-BRLF1 EBV 0.86 1264 EBV-BRLF1 188 3240 12 EBV BRLF1 YVLDHLIVV effector T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*02:01 B2M MHCI -11738 chip0514_317647 8.82 11.86 Chip3 T1D_7 T1D _ 6746 5023 ZNT8-107-115 ZNT8 0.86 10 ZNT8-107-115 207 4816 7 HomoSapiens ZNT8 LLIDLTSFL transitional T cells between effector and memory populations PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*02:01 B2M MHCI -11739 chip0514_391775 -3.02 10.52 Chip3 T1D_7 T1D TGTGCCAGCAGCTTAGCGCTCGGCTCCTACGAGCAGTACTTC CASSLALGSYEQYF TRBV7-7*01 TRBJ2-7*01 13.0 887.0 _CASSLALGSYEQYF 1 6310 POL-132-140 HIV 0.72 37 POL-132-140 208 6102 4 HIV-1 POL LVGPTPVNI Naive T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*02:01 B2M MHCI -11740 chip0514_239045 0.18 8.58 Chip3 T1D_7 T1D TGTGCCAGCAGTGAATCAGCGGGGGCTAACACCGGGGAGCTGTTTTTT CASSESAGANTGELFF TRBV6-1*01 TRBJ2-2*01 33.0 1188.0 _CASSESAGANTGELFF 1 8890 PGT-178 PGT 0.87 1480 PGT-178 184 8706 4 HomoSapiens PGT LLAGIGTVPI Naive T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*02:01 B2M MHCI -11741 chip0514_613818 -4.1 11.74 Chip3 T1D_7 T1D TGTGCCAGCAGCCCGTCCCCGTTAGCGGGAGTGGGGCAAGAGACCCAGTACTTC CASSPSPLAGVGQETQYF TRBV7-3*01,TRBV11-3*01 TRBJ2-5*01 6.0 410.0 _CASSPSPLAGVGQETQYF 1 6105 PGT-178 PGT 0.6 1480 PGT-178 191 5914 1 HomoSapiens PGT LLAGIGTVPI Naive T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*02:01 B2M MHCI -11742 chip0514_270650 0.7 8.66 Chip3 T1D_7 T1D TGTGCAATGAGCCTCTCTAACTTTGGAAATGAGAAATTAACCTTT CAMSLSNFGNEKLTF TRAV12-3*01 TRAJ48*01 54.0 1906.0 TGTGCCAGCAGTTCCGACACCATATATTTT CASSSDTIYF TRBV12-3*01,TRBV12-4*01 TRBJ1-3*01 27.0 1287.0 CAMSLSNFGNEKLTF_CASSSDTIYF 1 8700 PGT-178 PGT 0.95 1480 PGT-178 218 8482 4 HomoSapiens PGT LLAGIGTVPI Naive T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*02:01 B2M MHCI -11743 chip0514_182680 5.56 8.6 Chip3 T1D_7 T1D TGTGCTGTGCTCATGGATAGCAACTATCAGTTAATCTGG CAVLMDSNYQLIW TRAV21*01 TRAJ33*01 18.0 1035.0 TGCGCCAGCAGTCCAGCCGGGATGAACACTGAAGCTTTCTTT CASSPAGMNTEAFF TRBV10-2*01 TRBJ1-1*01 43.0 1519.0 CAVLMDSNYQLIW_CASSPAGMNTEAFF 1 9379 EBV-LMP2A EBV 0.95 700 EBV-LMP2A 191 9188 6 EBV LMP2A CLGGLLTMV central memory T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*02:01 B2M MHCI -11744 chip0514_73880 5.54 8.62 Chip3 T1D_7 T1D TGTATGGTGCCCCGGGGGGGAGGAAGCTACATACCTACATTT CMVPRGGGSYIPTF TRAV12-1*01 TRAJ6*01 17.0 874.0 CMVPRGGGSYIPTF_ 1 8551 EBV-LMP1-2 EBV 0.95 41 EBV-LMP1-2 210 8341 6 EBV LMP1 YLQQNWWTL central memory T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*02:01 B2M MHCI -11745 chip0514_884595 15.71 10.85 Chip3 T1D_7 T1D TGTGCCAGCAGTGTGTGGACAGGACACAATGAGCAGTTCCTC CASSVWTGHNEQFL TRBV6-4*01 TRBJ2-1*01 7.0 349.0 _CASSVWTGHNEQFL 1 3128 EBV-BLMF1 EBV 0.89 2531 NEG 200 2928 12 EBV BLMF1 GLCTLVAML effector T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*02:01 B2M MHCI -11746 chip0514_869588 5.42 9.06 Chip3 T1D_8 T1D TGTGCTGCGACCGGGAATTCAGGATACAGCACCCTCACCTTT CAATGNSGYSTLTF TRAV17*01 TRAJ11*01 3.0 47.0 TGTGCCAGCAGTTACCAGGGGGGGAATGAGCAGTTCTTC CASSYQGGNEQFF TRBV6-5*01 TRBJ2-1*01 32.0 1887.0 CAATGNSGYSTLTF_CASSYQGGNEQFF 1 6439 EBV-LMP2-FLY EBV 0.91 355 NEG 189 6250 6 EBV LMP2 FLYALALLL central memory T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*02:01 B2M MHCI -11747 chip0514_800444 14.77 10.2 Chip3 T1D_8 T1D TGTGCCGTGAAGCGCTCTTTAGGTGGGGCAAACAACCTCTTCTTT CAVKRSLGGANNLFF TRAV8-1*01 TRAJ36*01 32.0 1387.0 TGTGCCAGCAGCTTTTTCAGCTCCTACGAGCAGTACTTC CASSFFSSYEQYF TRBV5-6*01 TRBJ2-7*01 8.0 336.0 CAVKRSLGGANNLFF_CASSFFSSYEQYF 1 3692 EBV-BRLF1 EBV 1.0 1264 EBV-BRLF1 185 3507 12 EBV BRLF1 YVLDHLIVV effector T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*02:01 B2M MHCI -11748 chip0514_187804 -3.11 11.35 Chip3 T1D_7 T1D _ 6746 6674 INS-6-16 INS 0.67 20 INS-6-16 186 6488 4 HomoSapiens INS RLLPLLALLAL Naive T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*02:01 B2M MHCI -11749 chip0514_174821 12.68 6.76 Chip3 T1D_8 T1D TGTGCTTCCGGCGGCTTTTCCGGTTCCTGCGCCCTCACCCTT CASGGFSGSCALTL TRAV17*01 TRAJ11*01 6.0 37.0 CASGGFSGSCALTL_ 1 4943 EBV-LMP2-FLY EBV 0.94 355 EBV-LMP2-FLY 187 4756 10 EBV LMP2 FLYALALLL effector memory T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*02:01 B2M MHCI -11750 chip0514_170276 -2.06 7.48 Chip3 T1D_7 T1D TGTGCAATGAGCATATCTAACTTTGGAAATGAGAAATTAACCTTT CAMSISNFGNEKLTF TRAV12-3*01 TRAJ48*01 9.0 170.0 CAMSISNFGNEKLTF_ 13 7045 PGT-178 PGT 0.69 1480 PGT-178 182 6863 4 HomoSapiens PGT LLAGIGTVPI Naive T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*02:01 B2M MHCI -11751 chip0514_771515 -4.22 9.43 Chip3 T1D_7 T1D TGTGCTGTGCGCCTACTGTCTTCCGGTGGGGGTGCTGACGGCCTCACCTTT CAVRLLSSGGGADGLTF TRAV3*01 TRAJ45*01 5.0 139.0 TGTGCCAGCGGCTCCCGAGCGAGCACAGATACGCAGTATTTT CASGSRASTDTQYF TRBV12-3*01,TRBV12-4*01 TRBJ2-3*01 23.0 1370.0 CAVRLLSSGGGADGLTF_CASGSRASTDTQYF 1 6164 ZNT8-153-161 ZNT8 0.76 41 ZNT8-153-161 173 5991 2 HomoSapiens ZNT8 VVTGVLVYL Naive T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*02:01 B2M MHCI -11752 chip0514_472478 -2.98 9.03 Chip3 T1D_7 T1D TGTGCTACCACAAACCAGGCAGGAACTGCTCTGATCTTT CATTNQAGTALIF TRAV38-1*01 TRAJ15*01 15.0 1362.0 TGTGCCAGCAGTTTGTGGGGGACTGAAGCTTTCTTT CASSLWGTEAFF TRBV28*01 TRBJ1-1*01 12.0 530.0 CATTNQAGTALIF_CASSLWGTEAFF 1 7261 IAPP-5-13 IAPP 0.85 30 IAPP-5-13 186 7075 2 HomoSapiens IAPP KLQVFLIVL Naive T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*02:01 B2M MHCI -11753 chip0514_438621 11.36 8.85 Chip3 T1D_7 T1D TGTGCAGAGAAGAGGACACCGGCAGGAACTGCTCTGATCTTT CAEKRTPAGTALIF TRAV13-2*01 TRAJ15*01 1.0 36.0 TGTGCCAGTAATGGCGGGAGCTCCTACAATGAGCAGTTCTTC CASNGGSSYNEQFF TRBV19*01 TRBJ2-1*01 2.0 61.0 CAEKRTPAGTALIF_CASNGGSSYNEQFF 1 4826 EBV-BRLF1 EBV 0.95 1264 EBV-BRLF1 207 4619 10 EBV BRLF1 YVLDHLIVV effector memory T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*02:01 B2M MHCI -11754 chip0514_746243 9.01 10.52 Chip3 T1D_7 T1D TGTGCCACCAGTGATTTCCTATCGAATGAGCAGTTCTTC CATSDFLSNEQFF TRBV24-1*01 TRBJ2-1*01 23.0 1267.0 _CATSDFLSNEQFF 1 5666 EBV-BRLF1 EBV 0.99 1264 EBV-BRLF1 181 5485 8 EBV BRLF1 YVLDHLIVV effector memory T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*02:01 B2M MHCI -11755 chip0514_248744 -1.12 8.9 Chip3 T1D_8 T1D TGTGCCTACTCAGGAACCTACAAATACATCTTT CAYSGTYKYIF TRAV12-1*01 TRAJ40*01 20.0 1753.0 TGCGCCAGCAGTGAGGGCGCTGAAGCTTTCTTT CASSEGAEAFF TRBV10-2*01 TRBJ1-1*01 31.0 1627.0 CAYSGTYKYIF_CASSEGAEAFF 1 6398 MART1-ALA MART1 0.8 269 NEG 199 6199 3 HomoSapiens MART1 ALAGIGILTV Naive T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*02:01 B2M MHCI -11756 chip0514_671101 -2.47 8.66 Chip3 T1D_7 T1D TGTGCAGCAAGCGCGGAGTCCAGACTCATGTTT CAASAESRLMF TRAV29/DV5*01 TRAJ31*01 1.0 57.0 TGTGCCAGCAGTTTGACCGGGGAGCTGTTTTTT CASSLTGELFF TRBV12-3*01,TRBV12-4*01 TRBJ2-2*01 14.0 911.0 CAASAESRLMF_CASSLTGELFF 1 6987 GP160-311-320 HIV 0.67 109 NEG 212 6775 2 HIV-1 GP160 RGPGRAFVTI Naive T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*02:01 B2M MHCI -11757 chip0514_426347 -0.39 9.47 Chip3 T1D_7 T1D TGTGCAATGTGGGAGGAATATGGAAACAAACTGGTCTTT CAMWEEYGNKLVF TRAV12-3*01 TRAJ47*01 20.0 1051.0 TGCGCCAGCAGCCAAGGGGGGGACACTGAAGCTTTCTTT CASSQGGDTEAFF TRBV4-1*01 TRBJ1-1*01 7.0 331.0 CAMWEEYGNKLVF_CASSQGGDTEAFF 1 6929 ADH-79-88 ADH 0.91 15 ADH-79-88 205 6724 3 HomoSapiens ADH RQFGPDWIVA Naive T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*02:01 B2M MHCI -11758 chip0514_229186 -4.13 8.96 Chip3 T1D_8 T1D TGTGCCGTAGGTGACAAGATCATCTTT CAVGDKIIF TRAV12-2*01 TRAJ30*01 3.0 150.0 TGTGCCAGCACGCCGGCACAGATCACCGGGGAGCTGTTTTTT CASTPAQITGELFF TRBV6-1*01 TRBJ2-2*01 47.0 2027.0 CAVGDKIIF_CASTPAQITGELFF 1 6097 MART1-ALA MART1 0.55 269 NEG 177 5920 2 HomoSapiens MART1 ALAGIGILTV Naive T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*02:01 B2M MHCI -11759 chip0514_806436 12.02 10.67 Chip3 T1D_7 T1D TGTGCAATGAGAGAGGGCGGGAACTTCAACAAATTTTACTTT CAMREGGNFNKFYF TRAV14/DV4*01 TRAJ21*01 1.0 34.0 TGCAGTGCGGGGGAAGTTTTAAACCAGCCCCAGCATTTT CSAGEVLNQPQHF TRBV20-1*01 TRBJ1-5*01 42.0 2079.0 CAMREGGNFNKFYF_CSAGEVLNQPQHF 1 6612 EBV-BRLF1 EBV 1.0 1264 EBV-BRLF1 192 6420 9 EBV BRLF1 YVLDHLIVV effector memory T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*02:01 B2M MHCI -11760 chip0514_286368 6.93 12.51 Chip3 T1D_7 T1D _ 6746 7702 MART1-ALA MART1 0.94 269 MART1-ALA 207 7495 7 HomoSapiens MART1 ALAGIGILTV transitional T cells between effector and memory populations PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*02:01 B2M MHCI -11761 chip0514_344071 16.11 10.3 Chip3 T1D_7 T1D TGCAGCGTAGGGGACGGCGGGACTAATGAAAAACTGTTTTTT CSVGDGGTNEKLFF TRBV29-1*01 TRBJ1-4*01 75.0 3927.0 _CSVGDGGTNEKLFF 4 3170 EBV-BLMF1 EBV 0.94 2531 EBV-BLMF1 208 2962 12 EBV BLMF1 GLCTLVAML effector T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*02:01 B2M MHCI -11762 chip0514_192599 7.1 12.96 Chip3 T1D_7 T1D TGTGCCAGCGAAAATCAGGTCCAAGAGACCCAGTACTTC CASENQVQETQYF TRBV28*01 TRBJ2-5*01 6.0 350.0 _CASENQVQETQYF 1 4554 GAG-433-442 HIV 0.75 19 NEG 169 4385 7 HIV-1 GAG FLGKIWPSYK transitional T cells between effector and memory populations PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*02:01 B2M MHCI -11763 chip0514_603854 14.7 9.05 Chip3 T1D_7 T1D TGCAGTGCTAGAGGGTCCACCTTCTACGAGCAGTACTTC CSARGSTFYEQYF TRBV20-1*01 TRBJ2-7*01 1.0 19.0 _CSARGSTFYEQYF 4 4082 EBV-BRLF1 EBV 0.96 1264 EBV-BRLF1 217 3865 12 EBV BRLF1 YVLDHLIVV effector T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*02:01 B2M MHCI -11764 chip0514_197670 -0.1 8.64 Chip3 T1D_7 T1D CGTGCAATAGGACTATCTAACTTTGGAAATGAGAAATTAACCTTT RAIGLSNFGNEKLTF TRAV12-3*01 TRAJ48*01 47.0 2426.0 RAIGLSNFGNEKLTF_ 1 7284 PGT-178 PGT 0.91 1480 PGT-178 172 7112 4 HomoSapiens PGT LLAGIGTVPI Naive T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*02:01 B2M MHCI -11765 chip0514_636505 -1.55 10.09 Chip3 T1D_7 T1D TGTGCAATGAGCCGGAGTAACTTTGGAAATGAGAAATTAACCTTT CAMSRSNFGNEKLTF TRAV12-3*01 TRAJ48*01 23.0 916.0 TGTGCCAGCAGTTACGAGGCTAGCGGGGGGCTAGAAGAGACCCAGTACTTC CASSYEASGGLEETQYF TRBV6-5*01 TRBJ2-5*01 20.0 441.0 CAMSRSNFGNEKLTF_CASSYEASGGLEETQYF 1 8148 PGT-178 PGT 0.96 1480 PGT-178 187 7961 3 HomoSapiens PGT LLAGIGTVPI Naive T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*02:01 B2M MHCI -11766 chip0514_362522 14.97 8.91 Chip3 T1D_8 T1D TGTGCAGAGGATAACAATGCCAGACTCATGTTT CAEDNNARLMF TRAV5*01,TRAV23/DV6*01 TRAJ31*01 2.0 17.0 TGCAGTGCTAGAGATGGGACAGGGAATGGCTACACCTTC CSARDGTGNGYTF TRBV20-1*01 TRBJ1-2*01 9.0 625.0 CAEDNNARLMF_CSARDGTGNGYTF 1 2321 EBV-BLMF1 EBV 0.93 2531 NEG 209 2112 12 EBV BLMF1 GLCTLVAML effector T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*02:01 B2M MHCI -11767 chip0514_140038 -1.05 8.86 Chip3 T1D_7 T1D TGTGCTGTCAGAACCGAGATGTATTCAGGAGGAGGTGCTGACGGACTCACCTTT CAVRTEMYSGGGADGLTF TRAV41*01 TRAJ45*01 2.0 67.0 TGTGCCACCAGTGATGCGACTTACCTTTCCGCCGGGGAGCTGTTTTTT CATSDATYLSAGELFF TRBV24-1*01 TRBJ2-2*01 23.0 862.0 CAVRTEMYSGGGADGLTF_CATSDATYLSAGELFF 1 8806 MART1-A28L MART1 0.76 84 MART1-A28L 161 8645 3 HomoSapiens MART1 ALGIGILTV Naive T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*02:01 B2M MHCI -11768 chip0514_388408 -2.65 8.13 Chip3 T1D_7 T1D TGTGCTGTGAAACCAAGAGGGAACGCACTGCCAGAAACCTCACCTTT CAVKPRGaa?RTARNLTF TRAV21*01 TRAJ44*01 25.0 1163.0 TGTGCCAGCGCCGAGGTCATCTACAATGAGCAGCTCTTC CASAEVIYNEQLF TRBV12-3*01,TRBV12-4*01 TRBJ2-1*01 8.0 777.0 CAVKPRGaa?RTARNLTF_CASAEVIYNEQLF 1 7286 MART1-ALA MART1 0.5 269 MART1-ALA 156 7130 3 HomoSapiens MART1 ALAGIGILTV Naive T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*02:01 B2M MHCI -11769 chip0514_310025 10.33 10.35 Chip3 T1D_7 T1D TGTGCCATGAAGAACACCGACAAGCTCATCTTT CAMKNTDKLIF TRAV8-1*01 TRAJ34*01 13.0 867.0 TGTGCCAGCAGTTCTCAGGGAGGGACCTATGGCTACACCTTC CASSSQGGTYGYTF TRBV6-5*01 TRBJ1-2*01 2.0 72.0 CAMKNTDKLIF_CASSSQGGTYGYTF 1 5227 EBV-BRLF1 EBV 0.98 1264 EBV-BRLF1 204 5023 9 EBV BRLF1 YVLDHLIVV effector memory T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*02:01 B2M MHCI -11770 chip0514_291704 -0.63 9.56 Chip3 T1D_7 T1D TGCGCAGAGCCCCACCGACACGCTCATCTTT CAEPH??cDTLIF TRAV13-2*01 TRAJ34*01 1.0 27.0 CAEPH??cDTLIF_ 1 7398 HCVNS4B-1807-1816 HCV 0.7 74 HCVNS4B-1807-1816 169 7229 3 HCV NS4B LLFNILGGWV Naive T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*02:01 B2M MHCI -11771 chip0514_263120 -0.69 7.06 Chip3 T1D_7 T1D _ 6746 9085 EBV-LMP2A EBV 0.73 700 NEG 190 8895 3 EBV LMP2A CLGGLLTMV Naive T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*02:01 B2M MHCI -11772 chip0514_686017 16.2 11.31 Chip3 T1D_7 T1D TGCAGCGTAGGGGACGGCGGGACTAATGAAAAACTGTTTTTT CSVGDGGTNEKLFF TRBV29-1*01 TRBJ1-4*01 83.0 3840.0 _CSVGDGGTNEKLFF 4 2929 EBV-BLMF1 EBV 0.94 2531 EBV-BLMF1 215 2714 12 EBV BLMF1 GLCTLVAML effector T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*02:01 B2M MHCI -11773 chip0514_338922 -2.22 8.17 Chip3 T1D_7 T1D TGTGTGGTGAAGGGAGATGACAAGATCATCTTT CVVKGDDKIIF TRAV12-1*01 TRAJ30*01 12.0 554.0 TGTGCCAGCAGTTTACTAACAGGCAATCAGCCCCAGCATTTT CASSLLTGNQPQHF TRBV28*01 TRBJ1-5*01 27.0 903.0 CVVKGDDKIIF_CASSLLTGNQPQHF 1 8904 IGRP-152-160-WLI IGRP 0.81 27 NEG 175 8729 2 HomoSapiens IGRP FLWSVFWLI Naive T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*02:01 B2M MHCI -11774 chip0514_431538 -2.85 11.64 Chip3 T1D_7 T1D TGTGCCAGTAGTATTGGGGACACTGAAGCTTTCTTT CASSIGDTEAFF TRBV19*01 TRBJ1-1*01 58.0 3473.0 _CASSIGDTEAFF 1 5360 HCVNS3-1406-1415 HCV 0.62 12 NEG 207 5153 4 HCV NS3 KLVALGINAV Naive T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*02:01 B2M MHCI -11775 chip0514_694441 -3.03 9.78 Chip3 T1D_8 T1D TGTGCAATGAGTCGATCTAACTTTGGAAATGAGAAATTAACCTTT CAMSRSNFGNEKLTF TRAV12-3*01 TRAJ48*01 31.0 1301.0 TGTGCCAGCAGTCCCGCGGCAGGGATGGAGACCCAGTACTTC CASSPAAGMETQYF TRBV28*01 TRBJ2-5*01 17.0 862.0 CAMSRSNFGNEKLTF_CASSPAAGMETQYF 1 5035 PGT-178 PGT 0.85 1480 PGT-178 195 4840 2 HomoSapiens PGT LLAGIGTVPI Naive T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*02:01 B2M MHCI -11776 chip0514_436604 15.93 11.87 Chip3 T1D_8 T1D _ 6746 2064 EBV-BRLF1 EBV 0.94 1264 EBV-BRLF1 199 1865 12 EBV BRLF1 YVLDHLIVV effector T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*02:01 B2M MHCI -11777 chip0514_9125 -2.77 11.84 Chip3 T1D_8 T1D TGTGCCAGCAGTTACTCGAGCGGGTACGAGCAGTACTTC CASSYSSGYEQYF TRBV6-5*01 TRBJ2-7*01 16.0 794.0 _CASSYSSGYEQYF 1 4156 EBV-BLMF1 EBV 0.74 2531 EBV-BLMF1 184 3972 4 EBV BLMF1 GLCTLVAML Naive T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*02:01 B2M MHCI -11778 chip0514_567823 -2.98 8.03 Chip3 T1D_7 T1D TGTGCAATGGCGATATCTAACTTTGGAAATGAGAAATTAACCTTT CAMAISNFGNEKLTF TRAV12-3*01 TRAJ48*01 61.0 1930.0 TGTGCCAGCAGTTTGACAGGGAGGGACGATGAAAAACTGTTTTTT CASSLTGRDDEKLFF TRBV28*01 TRBJ1-4*01 25.0 939.0 CAMAISNFGNEKLTF_CASSLTGRDDEKLFF 1 10664 PGT-178 PGT 0.7 1480 PGT-178 170 10494 2 HomoSapiens PGT LLAGIGTVPI Naive T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*02:01 B2M MHCI -11779 chip0514_727944 -0.95 9.16 Chip3 T1D_7 T1D TGTGCTGTGGCGCGGGGGCACGGTGCTCCCCTTT CAVARgg??gcTVLPF TRAV36/DV7*01 TRAJ39*01 13.0 1066.0 TGTGCCAGCAGCAACTGGGACAGGGAAGGCGAGCAGTACTTC CASSNWDREGEQYF TRBV11-3*01 TRBJ2-7*01 3.0 102.0 CAVARgg??gcTVLPF_CASSNWDREGEQYF 1 7415 PREINS-2-10 INS 0.86 37 PREINS-2-10 172 7243 3 HomoSapiens PREINS ALWMRLLPL Naive T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*02:01 B2M MHCI -11780 chip0514_719132 -2.99 9.02 Chip3 T1D_7 T1D TGTGCAATGAGCGCGTCTAACTTTGGAAATGAGAAATTAACCTTT CAMSASNFGNEKLTF TRAV12-3*01 TRAJ48*01 40.0 1177.0 TGTGCCAGCAGCTTGGCCCGCCAAACTTTATCCTACAATGAGCAGTTCTTC CASSLARQTLSYNEQFF TRBV5-6*01 TRBJ2-1*01 13.0 514.0 CAMSASNFGNEKLTF_CASSLARQTLSYNEQFF 1 7324 PGT-178 PGT 0.94 1480 PGT-178 197 7127 2 HomoSapiens PGT LLAGIGTVPI Naive T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*02:01 B2M MHCI -11781 chip0514_215774 12.07 7.16 Chip3 T1D_7 T1D TGTGCCGCTAGGGGAGGGGTTACCACTGGGTTATCTTT CAARGGg?tYHWVIF TRAV13-1*01 TRAJ13*01 9.0 650.0 TGTGCCAGCAGTTCCCTATCGGGAAGCGGTCAGCCCCAGCATTTT CASSSLSGSGQPQHF TRBV28*01 TRBJ1-5*01 33.0 1549.0 CAARGGg?tYHWVIF_CASSSLSGSGQPQHF 1 4651 EBV-BRLF1 EBV 0.98 1264 EBV-BRLF1 204 4447 10 EBV BRLF1 YVLDHLIVV effector memory T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*02:01 B2M MHCI -11782 chip0514_144132 -0.67 10.03 Chip3 T1D_7 T1D TGTGCCGTGCCTGGAGGCTTCAAAACTATCTTT CAVPGGFKTIF TRAV12-2*01 TRAJ9*01 25.0 2544.0 TGTGCCAGCAGTGTAGGGACAGGGGATCAAGAGACCCAGTACTTC CASSVGTGDQETQYF TRBV6-1*01 TRBJ2-5*01 30.0 1353.0 CAVPGGFKTIF_CASSVGTGDQETQYF 1 7238 PGT-178 PGT 0.83 1480 PGT-178 213 7025 3 HomoSapiens PGT LLAGIGTVPI Naive T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*02:01 B2M MHCI -11783 chip0514_93229 -5.0 9.28 Chip3 T1D_7 T1D TGTGCAATGAGCGCATCTAACTTTGGCAATGGGATATTAACCTTT CAMSASNFGNGILTF TRAV12-3*01 TRAJ48*01 19.0 790.0 TGCGCCAGCAGCTTAGATGATTGGACAGACTCAAAGGGGGCTAACTATGGCTACACCTTC CASSLDDWTDSKGANYGYTF TRBV11-3*01 TRBJ1-2*01 18.0 598.0 CAMSASNFGNGILTF_CASSLDDWTDSKGANYGYTF 1 7505 PGT-178 PGT 0.5 1480 NEG 181 7324 2 HomoSapiens PGT LLAGIGTVPI Naive T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*02:01 B2M MHCI -11784 chip0514_840357 12.07 7.42 Chip3 T1D_7 T1D TGCGCCAGCAGTGGGGACGGGATGAACACTGAAGCTTTCTTT CASSGDGMNTEAFF TRBV10-2*01 TRBJ1-1*01 28.0 1210.0 _CASSGDGMNTEAFF 131 6642 EBV-LMP2A EBV 0.92 700 EBV-LMP2A 197 6445 10 EBV LMP2A CLGGLLTMV effector memory T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*02:01 B2M MHCI -11785 chip0514_328253 -2.38 9.99 Chip3 T1D_7 T1D TGTGCAATGGTTATATCTAACTTTGGAAATGAGAAATTAACCTTT CAMVISNFGNEKLTF TRAV12-3*01 TRAJ48*01 33.0 1195.0 TGTGCCGGCAGTGACGACAGGGAGGACACCGGGGAGCTGTTGTTT CAGSDDREDTGELLF TRBV3-1*01 TRBJ2-2*01 3.0 101.0 CAMVISNFGNEKLTF_CAGSDDREDTGELLF 1 6904 PGT-178 PGT 0.81 1480 PGT-178 167 6737 3 HomoSapiens PGT LLAGIGTVPI Naive T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*02:01 B2M MHCI -11786 chip0514_560704 9.34 9.76 Chip3 T1D_7 T1D TGTGCCGTGAAGGACACCGACAAGCTCCTCTTT CAVKDTDKLLF TRAV8-1*01 TRAJ34*01 6.0 668.0 TGTGCCAGCAGTATCTACAATGAGCAGTTCTTC CASSIYNEQFF TRBV27*01 TRBJ2-1*01 64.0 5286.0 CAVKDTDKLLF_CASSIYNEQFF 1 7028 EBV-BRLF1 EBV 0.99 1264 EBV-BRLF1 178 6850 8 EBV BRLF1 YVLDHLIVV effector memory T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*02:01 B2M MHCI -11787 chip0514_556287 13.76 11.65 Chip3 T1D_7 T1D TGTGTGGTGAGCGCGGAGAACCAGGGAGGAAAGCTTATCTTC CVVSAENQGGKLIF TRAV10*01 TRAJ23*01 13.0 447.0 TGTGCCAGCAGTGTGTGGACAGGACACAATGAGCAGTTCTTC CASSVWTGHNEQFF TRBV6-4*01 TRBJ2-1*01 20.0 1474.0 CVVSAENQGGKLIF_CASSVWTGHNEQFF 3 3331 EBV-BLMF1 EBV 0.68 2531 EBV-BLMF1 208 3123 12 EBV BLMF1 GLCTLVAML effector T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*02:01 B2M MHCI -11788 chip0514_656045 6.7 13.74 Chip3 T1D_8 T1D TGTGCTGGGGGGGGGGATGGAGGAAGCCAAGGAAATCTCCTCTTT CAGGGDGGSQGNLLF TRAV21*01 TRAJ42*01 50.0 1681.0 TGTGCCGTTAGCGGGCGGGCCGGTGAGACCCAGTACTTC CAVSGRAGETQYF TRBV19*01 TRBJ2-5*01 4.0 198.0 CAGGGDGGSQGNLLF_CAVSGRAGETQYF 1 4326 M1 FLU 0.88 1250 M1 202 4124 7 InfluenzaA M1 GILGFVFTL transitional T cells between effector and memory populations PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*02:01 B2M MHCI -11789 chip0514_653622 8.26 9.73 Chip3 T1D_7 T1D TGTGCCAGCACTCAGCAGGGGTCTAACTATGGCTACACCTTC CASTQQGSNYGYTF TRBV6-2*01,TRBV6-3*01 TRBJ1-2*01 5.0 253.0 _CASTQQGSNYGYTF 1 6298 EBV-BRLF1 EBV 0.92 1264 EBV-BRLF1 185 6113 8 EBV BRLF1 YVLDHLIVV effector memory T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*02:01 B2M MHCI -11790 chip0514_64341 -3.55 9.57 Chip3 T1D_7 T1D TGTGTGGTGGCGGATAACTATGGTCAGAATTTTGTCTTT CVVADNYGQNFVF TRAV12-1*01 TRAJ26*01 20.0 881.0 CVVADNYGQNFVF_ 1 6022 PGT-178 PGT 0.65 1480 NEG 167 5855 2 HomoSapiens PGT LLAGIGTVPI Naive T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*02:01 B2M MHCI -11791 chip0514_709299 -1.75 8.85 Chip3 T1D_7 T1D TGTGCCAGCAGCTTAGAGGGAACTGAAGCTTTCTTT CASSLEGTEAFF TRAV38-1*01 TRAJ40*01 2.0 143.0 TGTGCCAGCAGCTTAGAGGGAACTGAAGCTTTCTTT CASSLEGTEAFF TRBV7-9*01 TRBJ1-1*01 11.0 452.0 CASSLEGTEAFF_CASSLEGTEAFF 1 6674 PPI-29-38 INS 0.77 6 PPI-29-38 201 6473 3 HomoSapiens PPI HLCGSHLVEA Naive T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*02:01 B2M MHCI -11792 chip0514_566008 -4.6 7.58 Chip3 T1D_8 T1D TGTGCAGAGAGGGCAGGAGATGGTGGGGGAAATTGCAGTTT CAERAGga?WWGKLQF TRAV13-2*01 TRAJ24*01 1.0 27.0 CAERAGga?WWGKLQF_ 1 5042 PGT-178 PGT 0.6 1480 PGT-178 186 4856 2 HomoSapiens PGT LLAGIGTVPI Naive T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*02:01 B2M MHCI -11793 chip0514_463370 -3.85 7.86 Chip3 T1D_8 T1D TGTGCCAGCAGTGAAGTATCGGCCGGGAGAGCTTTCTTT CASSEVSAGRAFF TRAV14/DV4*01 TRAJ40*01 3.0 11.0 TGTGCCAGCAGTGAAGTATCGGCCGGGAGAGCTTTCTTT CASSEVSAGRAFF TRBV2*01 TRBJ1-1*01 84.0 3960.0 CASSEVSAGRAFF_CASSEVSAGRAFF 1 7480 MART1-ALA MART1 0.79 269 MART1-ALA 188 7292 2 HomoSapiens MART1 ALAGIGILTV Naive T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*02:01 B2M MHCI -11794 chip0514_486182 10.66 9.59 Chip3 T1D_8 T1D TGTGCAATGAGCCGGGCCCCCACGGCCGTGCTTCCTAGTTAATCTTT CAMSRAPac?GRAS*LIF TRAV12-3*01 TRAJ3*01 15.0 465.0 TGTGCCAGCAGCCCACCGGGACTAGCCCCCGGGGAGCTGTTTTTT CASSPPGLAPGELFF TRBV2*01 TRBJ2-2*01 16.0 692.0 CAMSRAPac?GRAS*LIF_CASSPPGLAPGELFF 1 4702 EBV-BLMF1 EBV 0.62 2531 NEG 210 4492 9 EBV BLMF1 GLCTLVAML effector memory T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*02:01 B2M MHCI -11795 chip0514_75114 -3.1 13.43 Chip3 T1D_7 T1D _ 6746 4591 PGT-178 PGT 0.78 1480 PGT-178 165 4426 1 HomoSapiens PGT LLAGIGTVPI Naive T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*02:01 B2M MHCI -11796 chip0514_149387 -3.09 11.52 Chip3 T1D_7 T1D TGTGCAATGTGCTTATCTAACTTTGGAAATGAGAAATTAACCTTT CAMCLSNFGNEKLTF TRAV12-3*01 TRAJ48*01 47.0 1800.0 TGCAGTGCTAGAGAGGGGTCGCAGGGGGCTAAGACCGGGGAGCTGTTTTTT CSAREGSQGAKTGELFF TRBV20-1*01 TRBJ2-2*01 42.0 2344.0 CAMCLSNFGNEKLTF_CSAREGSQGAKTGELFF 1 6040 PGT-178 PGT 0.86 1480 PGT-178 177 5863 4 HomoSapiens PGT LLAGIGTVPI Naive T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*02:01 B2M MHCI -11797 chip0514_202437 13.45 10.22 Chip3 T1D_7 T1D TGTGCCAGCAGTATCTACAATGAGCAGTTCTTC CASSIYNEQFF TRBV27*01 TRBJ2-1*01 12.0 832.0 _CASSIYNEQFF 1 4127 EBV-BRLF1 EBV 0.83 1264 EBV-BRLF1 217 3910 12 EBV BRLF1 YVLDHLIVV effector T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*02:01 B2M MHCI -11798 chip0514_223692 8.65 10.6 Chip3 T1D_7 T1D _ 6746 4844 EBV-BRLF1 EBV 0.97 1264 EBV-BRLF1 208 4636 8 EBV BRLF1 YVLDHLIVV effector memory T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*02:01 B2M MHCI -11799 chip0514_747738 8.85 8.72 Chip3 T1D_7 T1D TGTGCCAGCAGGGCGGAGGCCTATCTGAACACCGGGGAGCTGTTTTTT CASRAEAYLNTGELFF TRBV6-1*01 TRBJ2-2*01 45.0 1278.0 _CASRAEAYLNTGELFF 1 8019 EBV-BLMF1 EBV 0.77 2531 EBV-BLMF1 199 7820 8 EBV BLMF1 GLCTLVAML effector memory T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*02:01 B2M MHCI -11800 chip0514_713467 -2.67 11.0 Chip3 T1D_7 T1D TGTGCCAGCAGTGATATATGGCAGGGGGCTAACTATGGCTACACCTTC CASSDIWQGANYGYTF TRBV2*01 TRBJ1-2*01 19.0 869.0 _CASSDIWQGANYGYTF 1 5887 MART1-ALA MART1 0.92 269 NEG 162 5725 3 HomoSapiens MART1 ALAGIGILTV Naive T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*02:01 B2M MHCI -11801 chip0514_543135 12.1 10.69 Chip3 T1D_7 T1D TGCAGTGCTACAGACAGTACCTACAATGAGCAGTTCTTC CSATDSTYNEQFF TRBV20-1*01 TRBJ2-1*01 11.0 671.0 _CSATDSTYNEQFF 6 5184 EBV-BRLF1 EBV 0.94 1264 EBV-BRLF1 173 5011 9 EBV BRLF1 YVLDHLIVV effector memory T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*02:01 B2M MHCI -11802 chip0514_59655 -2.54 7.7 Chip3 T1D_8 T1D TGTGCTTCGAAGGGAAATGAAAAATTAACCTTT CASKGNEKLTF TRAV38-1*01 TRAJ48*01 11.0 657.0 TGTGCCAGCAGCGTAGGGGACAGTAATTCACCCCTCCACTTT CASSVGDSNSPLHF TRBV9*01 TRBJ1-6*01 3.0 49.0 CASKGNEKLTF_CASSVGDSNSPLHF 1 6728 CVB3-P3A CVB 0.93 77 NEG 179 6549 2 CoxsackievirusB P3A GIIYIIYKL Naive T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*02:01 B2M MHCI -11803 chip0514_351203 -4.16 9.45 Chip3 T1D_7 T1D TGCAGTGCTCGGAACTTGAGGGCCCAGGGCGGCGACATTCAGTACTTC CSARNLRAQGGDIQYF TRBV20-1*01 TRBJ2-4*01 7.0 553.0 _CSARNLRAQGGDIQYF 1 5445 PGT-178 PGT 0.82 1480 PGT-178 213 5232 2 HomoSapiens PGT LLAGIGTVPI Naive T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*02:01 B2M MHCI -11804 chip0514_220996 -2.47 13.64 Chip3 T1D_7 T1D TGTGTTGTGACCCCCATGGATAGCAACTATCAGTTAATCTGG CVVTPMDSNYQLIW TRAV8-2*01 TRAJ33*01 12.0 714.0 CVVTPMDSNYQLIW_ 1 4029 PTPRN-180-188 PTPRN 0.72 18 PTPRN-180-188 186 3843 1 HomoSapiens PTPRN LLPPLLEHL Naive T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*02:01 B2M MHCI -11805 chip0514_854933 14.56 10.4 Chip3 T1D_8 T1D TGTGCCGTGAAAGACACCGACAAGCTCATCTTT CAVKDTDKLIF TRAV8-1*01 TRAJ34*01 2.0 32.0 TGTGCCAGCAGCCAAGTGGTCGGTGCCTATGGCTACACCTTC CASSQVVGAYGYTF TRBV3-1*01 TRBJ1-2*01 47.0 2667.0 CAVKDTDKLIF_CASSQVVGAYGYTF 2 3429 EBV-BRLF1 EBV 0.93 1264 EBV-BRLF1 215 3214 12 EBV BRLF1 YVLDHLIVV effector T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*02:01 B2M MHCI -11806 chip0514_480847 -0.89 10.51 Chip3 T1D_7 T1D TGTGCAGCAAGTATAATAGGATACAGCACCCTCACCTTT CAASIIGYSTLTF TRAV13-1*01 TRAJ11*01 27.0 1217.0 TGTGCCAGCAGGGACGGGCGGGAGACCCAGTACTTC CASRDGRETQYF TRBV2*01 TRBJ2-5*01 13.0 759.0 CAASIIGYSTLTF_CASRDGRETQYF 1 5868 HCVNS3-1073-1081 HCV 0.79 36 HCVNS3-1073-1081 193 5675 3 HCV NS3 CINGVCWTV Naive T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*02:01 B2M MHCI -11807 chip0514_732486 -4.13 7.44 Chip3 T1D_7 T1D TGTGCAATGAGCGGAGCTAACTTTGGAAATGAGAAATTAACCTTT CAMSGANFGNEKLTF TRAV12-3*01 TRAJ48*01 42.0 1621.0 TGCAGTGCTAGTACTGACCTCCGGGCTAGCCCCAAGCCAGATACGCAGTATTTT CSASTDLRASPKPDTQYF TRBV20-1*01 TRBJ2-3*01 1.0 32.0 CAMSGANFGNEKLTF_CSASTDLRASPKPDTQYF 1 9439 PGT-178 PGT 0.76 1480 PGT-178 172 9267 2 HomoSapiens PGT LLAGIGTVPI Naive T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*02:01 B2M MHCI -11808 chip0514_491493 -1.93 9.13 Chip3 T1D_8 T1D TGTGCCGTGGTCGAGAATTTTGTCTT CAVVg?aEFCL TRAV12-2*01 TRAJ26*01 4.0 323.0 TGTGCCAGCAGCTTAGCGCAGGGCCAGCCCCAGCATTTT CASSLAQGQPQHF TRBV7-9*01 TRBJ1-5*01 3.0 170.0 CAVVg?aEFCL_CASSLAQGQPQHF 1 6020 MART1-ALA MART1 0.46 269 MART1-ALA 147 5873 3 HomoSapiens MART1 ALAGIGILTV Naive T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*02:01 B2M MHCI -11809 chip0514_594957 -4.08 9.47 Chip3 T1D_7 T1D TGTGCAAGCCTACTATCTAACTTTGGAAATGAGAAATTAACCTTT CASLLSNFGNEKLTF TRAV12-3*01 TRAJ48*01 22.0 603.0 TGTGCCAGCAGACCCCCGGGGGGAGTCACAGATACGCAGTATTTT CASRPPGGVTDTQYF TRBV27*01 TRBJ2-3*01 53.0 2678.0 CASLLSNFGNEKLTF_CASRPPGGVTDTQYF 1 6601 PGT-178 PGT 0.87 1480 PGT-178 191 6410 4 HomoSapiens PGT LLAGIGTVPI Naive T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*02:01 B2M MHCI -11810 chip0514_676361 -2.71 9.3 Chip3 T1D_7 T1D TGTGCAATGCTTATATCTAACTTTGGACATGAGTCTTTCTCCTTT CAMLISNFGHESFSF TRAV12-3*01 TRAJ48*01 1.0 10.0 CAMLISNFGHESFSF_ 1 6523 PGT-178 PGT 0.88 1480 PGT-178 178 6345 3 HomoSapiens PGT LLAGIGTVPI Naive T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*02:01 B2M MHCI -11811 chip0514_190448 -1.11 8.63 Chip3 T1D_7 T1D TGTGCAATGAGAGAGGGAGGGAGTTACCAGAAAGTTACCTTT CAMREGGSYQKVTF TRAV14/DV4*01 TRAJ13*01 50.0 2411.0 TGTGCCAGCAGCTTAGTGGGGAAGAACACTGAAGCTTTCTTT CASSLVGKNTEAFF TRBV13*01 TRBJ1-1*01 36.0 1709.0 CAMREGGSYQKVTF_CASSLVGKNTEAFF 1 7051 ZNT8-245-254 ZNT8 0.96 2 ZNT8-245-254 173 6878 4 HomoSapiens ZNT8 KIADPICTFI Naive T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*02:01 B2M MHCI -11812 chip0514_618883 14.62 9.76 Chip3 T1D_7 T1D TGTGCCGTGAGTTCAGGATACAGCACCCTCACCTTT CAVSSGYSTLTF TRAV8-1*01 TRAJ11*01 1.0 22.0 TGTGCCAGCAGTTCCCTATCGGGAAGCGGTCAGCCCCAGCATTTT CASSSLSGSGQPQHF TRBV28*01 TRBJ1-5*01 66.0 2949.0 CAVSSGYSTLTF_CASSSLSGSGQPQHF 12 5728 EBV-BRLF1 EBV 0.95 1264 EBV-BRLF1 203 5525 12 EBV BRLF1 YVLDHLIVV effector T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*02:01 B2M MHCI -11813 chip0514_570704 -3.52 8.17 Chip3 T1D_7 T1D TGTGTGGTGACCTTATCTAACTTTGGAAATGAGAAATTAACCTTT CVVTLSNFGNEKLTF TRAV12-1*01 TRAJ48*01 53.0 1902.0 CVVTLSNFGNEKLTF_ 1 6041 PGT-178 PGT 0.4 1480 NEG 176 5865 2 HomoSapiens PGT LLAGIGTVPI Naive T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*02:01 B2M MHCI -11814 chip0514_281129 -1.76 8.24 Chip3 T1D_7 T1D _ 6746 7735 HCVNS4B-1807-1816 HCV 0.71 74 NEG 163 7572 3 HCV NS4B LLFNILGGWV Naive T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*02:01 B2M MHCI -11815 chip0514_676434 -5.13 9.27 Chip3 T1D_7 T1D _ 6746 6709 POL-334-342 HIV 0.9 12 POL-334-342 184 6525 2 HIV-1 POL VIYQYMDDL Naive T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*02:01 B2M MHCI -11816 chip0514_750307 9.03 10.51 Chip3 T1D_8 T1D TGTCCCGTGTTTGACACCGACAAGCTCATCTTT CPVFDTDKLIF TRAV8-1*01 TRAJ34*01 12.0 1235.0 TGTGCCAGCAGCCAAGTGGTCGGTGCCTATGGCTACACCTTC CASSQVVGAYGYTF TRBV3-1*01 TRBJ1-2*01 31.0 1830.0 CPVFDTDKLIF_CASSQVVGAYGYTF 1 6169 EBV-BRLF1 EBV 0.99 1264 EBV-BRLF1 207 5962 9 EBV BRLF1 YVLDHLIVV effector memory T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*02:01 B2M MHCI -11817 chip0514_232446 -2.17 11.81 Chip3 T1D_8 T1D TGCAGCACTACAGGGGACTACACTGAAGCTTTCTTT CSTTGDYTEAFF TRBV29-1*01 TRBJ1-1*01 1.0 65.0 _CSTTGDYTEAFF 1 4777 CVB3-P3A CVB 0.83 77 NEG 184 4593 1 CoxsackievirusB P3A GIIYIIYKL Naive T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*02:01 B2M MHCI -11818 chip0514_78099 -0.41 7.84 Chip3 T1D_7 T1D TGTGCAATCTCCATATCTAACTTTGGAAATGAGAAATTAACCTTT CAISISNFGNEKLTF TRAV12-3*01 TRAJ48*01 26.0 1003.0 CAISISNFGNEKLTF_ 1 9388 PGT-178 PGT 0.66 1480 PGT-178 170 9218 4 HomoSapiens PGT LLAGIGTVPI Naive T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*02:01 B2M MHCI -11819 chip0514_515693 10.73 9.14 Chip3 T1D_8 T1D TGTGCTACGGCGGGGGCTTCCGGATACAGCACCCTCACCTTT CATAGASGYSTLTF TRAV17*01 TRAJ11*01 3.0 107.0 CATAGASGYSTLTF_ 1 4853 EBV-LMP2-FLY EBV 0.94 355 EBV-LMP2-FLY 182 4671 10 EBV LMP2 FLYALALLL effector memory T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*02:01 B2M MHCI -11820 chip0514_625404 6.39 11.69 Chip3 T1D_7 T1D TGTGTGGGTACAAGGTCAGGAGGAAGCTACATACCTACATTT CVGTRSGGSYIPTF TRAV12-1*01 TRAJ6*01 2.0 39.0 TGTGCCAGTAGTATATTTCAGGGAAGCAATCAGCCCCAGCATTTT CASSIFQGSNQPQHF TRBV19*01 TRBJ1-5*01 11.0 402.0 CVGTRSGGSYIPTF_CASSIFQGSNQPQHF 1 8944 M1 FLU 0.86 1250 M1 225 8719 7 InfluenzaA M1 GILGFVFTL transitional T cells between effector and memory populations PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*02:01 B2M MHCI -11821 chip0514_618018 1.03 8.53 Chip3 T1D_7 T1D TGTGCAATGAGTAGATCTAACTTTGGACATGAGAAATTAACCTTT CAMSRSNFGHEKLTF TRAV12-3*01 TRAJ48*01 25.0 628.0 TGTGCCAGCAGTTCCCGAGACAGCGGAACTAACTATGGCTACACCTTC CASSSRDSGTNYGYTF TRBV6-2*01,TRBV6-3*01 TRBJ1-2*01 26.0 651.0 CAMSRSNFGHEKLTF_CASSSRDSGTNYGYTF 1 10476 PGT-178 PGT 0.81 1480 PGT-178 227 10249 4 HomoSapiens PGT LLAGIGTVPI Naive T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*02:01 B2M MHCI -11822 chip0514_621367 -0.4 9.76 Chip3 T1D_7 T1D TGTGCCAGCAGTTTTACTCCAGCGAACACCGGGGAGCTGTTTTTT CASSFTPANTGELFF TRBV27*01 TRBJ2-2*01 25.0 1113.0 _CASSFTPANTGELFF 1 6855 MART1-ALA MART1 0.89 269 MART1-ALA 179 6676 3 HomoSapiens MART1 ALAGIGILTV Naive T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*02:01 B2M MHCI -11823 chip0514_600339 14.65 12.41 Chip3 T1D_8 T1D TGTGACGTGAAAGACACCGGCAGGCTCGTCTTT CDVKDTGRLVF TRAV8-1*01 TRAJ34*01 4.0 442.0 TGTGCCAGCAGCCAAGTGGTCGGTGCCTATGGCTACACCTTC CASSQVVGAYGYTF TRBV3-1*01 TRBJ1-2*01 4.0 126.0 CDVKDTGRLVF_CASSQVVGAYGYTF 1 2783 EBV-BRLF1 EBV 0.96 1264 EBV-BRLF1 174 2609 12 EBV BRLF1 YVLDHLIVV effector T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*02:01 B2M MHCI -11824 chip0514_580142 -2.03 12.23 Chip3 T1D_7 T1D TGTGCAATGAGAGAGGGCCCCCTGTTAGAAAATGCAGGCAACATGCTCACCCTT CAMREGPLLENAGNMLTL TRAV14/DV4*01 TRAJ39*01 45.0 1002.0 CAMREGPLLENAGNMLTL_ 1 4940 PGT-178 PGT 0.75 1480 PGT-178 178 4762 1 HomoSapiens PGT LLAGIGTVPI Naive T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*02:01 B2M MHCI -11825 chip0514_804566 -4.65 9.91 Chip3 T1D_7 T1D TGCATCCTGATCCGTTACGAAAAGCTGGTCTTT CILIRYEKLVF TRAV26-2*01 TRAJ57*01 23.0 1966.0 TGTGCCAGCAGCCAAGACTACAGGGACCAAGAGACCCAGTACTTC CASSQDYRDQETQYF TRBV14*01 TRBJ2-5*01 6.0 181.0 CILIRYEKLVF_CASSQDYRDQETQYF 1 7671 GFAP-214-222 GFAP 0.5 6 NEG 156 7515 2 HomoSapiens GFAP QLARQQVHV Naive T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*02:01 B2M MHCI -11826 chip0514_267264 -3.97 12.47 Chip3 T1D_7 T1D TGTGCTGCCACCAGCACCGGTAACCAGTTCTATTTT CAATSTGNQFYF TRAV41*01 TRAJ49*01 13.0 825.0 TGTGCCAGCAGCCAATTGACAGGGACTGGATCCGAGCAGTACTTC CASSQLTGTGSEQYF TRBV4-2*01 TRBJ2-7*01 11.0 496.0 CAATSTGNQFYF_CASSQLTGTGSEQYF 1 4801 IGRP-265-273 IGRP 0.71 34 IGRP-265-273 152 4649 1 HomoSapiens IGRP VLFGLGFAI Naive T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*02:01 B2M MHCI -11827 chip0514_394219 10.16 6.98 Chip3 T1D_7 T1D TGTGCCAGCAGTTCCCTATCGGGAAGCGGTCAGCCCCAGCATTTT CASSSLSGSGQPQHF TRBV28*01 TRBJ1-5*01 1.0 25.0 _CASSSLSGSGQPQHF 23 6391 EBV-BRLF1 EBV 0.95 1264 EBV-BRLF1 207 6184 10 EBV BRLF1 YVLDHLIVV effector memory T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*02:01 B2M MHCI -11828 chip0514_174725 10.3 8.87 Chip3 T1D_8 T1D TGTGTGGGTACAAGGTCAGGAGGAAGCTACATACCTACATTT CVGTRSGGSYIPTF TRAV12-1*01 TRAJ6*01 61.0 3522.0 TGTGCCAGCAGCCAAGATTCTTCCGAGCAGTACTTC CASSQDSSEQYF TRBV4-2*01 TRBJ2-7*01 23.0 1395.0 CVGTRSGGSYIPTF_CASSQDSSEQYF 2 5331 EBV-LMP1-2 EBV 0.93 41 EBV-LMP1-2 210 5121 10 EBV LMP1 YLQQNWWTL effector memory T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*02:01 B2M MHCI -11829 chip0514_722444 -0.66 8.88 Chip3 T1D_7 T1D TGTGCCAGAGATTCCGGGACTAGCGGCACAGATACGCAGTATTTT CARDSGTSGTDTQYF TRBV2*01 TRBJ2-3*01 27.0 1468.0 _CARDSGTSGTDTQYF 1 9110 VPR-59-67 HIV 0.6 16 NEG 179 8931 3 HIV-1 VPR AIIRILQQL Naive T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*02:01 B2M MHCI -11830 chip0514_364327 -4.6 10.0 Chip3 T1D_7 T1D TGTGCCGTGTATGGTGGTGCTACAAACAAGCTCATCTTT CAVYGGATNKLIF TRAV12-2*01 TRAJ32*01 9.0 472.0 TGCGCCAGCAGCTTGGCGGGGGGTGGAGGTGAGCAGTTCTTC CASSLAGGGGEQFF TRBV5-1*01 TRBJ2-1*01 18.0 1304.0 CAVYGGATNKLIF_CASSLAGGGGEQFF 1 5453 ZNT8-173-181 ZNT8 0.93 27 ZNT8-173-181 167 5286 2 HomoSapiens ZNT8 IQATVMIIV Naive T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*02:01 B2M MHCI -11831 chip0514_641569 -2.2 8.22 Chip3 T1D_7 T1D TGTGCAGTGATCATCGCTGTCTTTGGAAATGAGAAATTAACCTTT CAVIIAVFGNEKLTF TRAV12-3*01 TRAJ48*01 11.0 509.0 TGCGCCACCACAATGGGGCAGCCAACGAACACCGGAGAGCTGTTTTTT CATTMGQPTNTGELFF TRBV5-1*01 TRBJ2-2*01 21.0 782.0 CAVIIAVFGNEKLTF_CATTMGQPTNTGELFF 1 8412 PGT-178 PGT 0.71 1480 PGT-178 165 8247 2 HomoSapiens PGT LLAGIGTVPI Naive T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*02:01 B2M MHCI -11832 chip0514_418720 9.25 10.29 Chip3 T1D_7 T1D TGTGCAATGAGAGGGTCGCCTCTTATAACACCGACAAGCTCATCTTT CAMRGSPct?YNTDKLIF TRAV14/DV4*01 TRAJ34*01 1.0 93.0 TGTGCCAGCAGTGAGGTGGACCAATACGAGCAGTACTTC CASSEVDQYEQYF TRBV6-1*01 TRBJ2-7*01 1.0 40.0 CAMRGSPct?YNTDKLIF_CASSEVDQYEQYF 1 4846 EBV-BRLF1 EBV 0.92 1264 EBV-BRLF1 203 4643 8 EBV BRLF1 YVLDHLIVV effector memory T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*02:01 B2M MHCI -11833 chip0514_90265 -2.12 8.26 Chip3 T1D_7 T1D TGTGCCAGCAGTCTCCCGGGGACTAGCGGGACCGGGGAGCTGTTTTTT CASSLPGTSGTGELFF TRBV12-3*01,TRBV12-4*01 TRBJ2-2*01 25.0 866.0 _CASSLPGTSGTGELFF 1 7974 MART1-ALA MART1 0.76 269 MART1-ALA 169 7805 4 HomoSapiens MART1 ALAGIGILTV Naive T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*02:01 B2M MHCI -11834 chip0514_196601 -4.47 8.89 Chip3 T1D_7 T1D TGTGCAATGAGCCGATCTAACTTTGGAAATGAGAAATTAACCTTT CAMSRSNFGNEKLTF TRAV12-3*01 TRAJ48*01 2.0 74.0 TGTGCCATCAGTGGAGTGGGGACTGAAGCTTTCTTT CAISGVGTEAFF TRBV10-3*01 TRBJ1-1*01 5.0 189.0 CAMSRSNFGNEKLTF_CAISGVGTEAFF 1 4990 PGT-178 PGT 0.75 1480 PGT-178 160 4830 2 HomoSapiens PGT LLAGIGTVPI Naive T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*02:01 B2M MHCI -11835 chip0514_360781 -3.22 10.36 Chip3 T1D_8 T1D _ 6746 4891 PGT-178 PGT 0.67 1480 PGT-178 166 4725 2 HomoSapiens PGT LLAGIGTVPI Naive T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*02:01 B2M MHCI -11836 chip0514_436581 12.55 7.15 Chip3 T1D_7 T1D TGTGCTGTCCTCCTGGATAGCAACTATCAGTTAATCTGG CAVLLDSNYQLIW TRAV21*01,TRAV12-3*01 TRAJ33*01 7.0 402.0 TGCGCCAGCAGTGAGGACGGGATGAACACTGAAGCTTTCTTT CASSEDGMNTEAFF TRBV10-2*01 TRBJ1-1*01 40.0 1787.0 CAVLLDSNYQLIW_CASSEDGMNTEAFF 4 5897 EBV-LMP2A EBV 0.97 700 EBV-LMP2A 187 5710 10 EBV LMP2A CLGGLLTMV effector memory T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*02:01 B2M MHCI -11837 chip0514_689514 6.06 13.24 Chip3 T1D_7 T1D TGTGCCACCAAGCCGGGGGGAGGGAACACTGAAGCTTTCTTT CATKPGGGNTEAFF TRBV19*01 TRBJ1-1*01 2.0 26.0 _CATKPGGGNTEAFF 1 6037 M1 FLU 0.95 1250 M1 171 5866 7 InfluenzaA M1 GILGFVFTL transitional T cells between effector and memory populations PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*02:01 B2M MHCI -11838 chip0514_305599 10.11 7.25 Chip3 T1D_8 T1D TGTGCTCTAAAGGACACCGACAAGCTCATCTTT CALKDTDKLIF TRAV16*01 TRAJ34*01 9.0 695.0 TGTGCCACCAGTGATTGGCTTACCAATGAGCAGTTCTTC CATSDWLTNEQFF TRBV24-1*01 TRBJ2-1*01 13.0 850.0 CALKDTDKLIF_CATSDWLTNEQFF 2 4521 EBV-BRLF1 EBV 0.97 1264 EBV-BRLF1 178 4343 10 EBV BRLF1 YVLDHLIVV effector memory T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*02:01 B2M MHCI -11839 chip0514_877774 4.89 10.78 Chip3 T1D_7 T1D TGCAGTGCTAGGGGGGCTATCCACCCAACCTACGAGCAGTACTTC CSARGAIHPTYEQYF TRBV20-1*01 TRBJ2-7*01 8.0 546.0 _CSARGAIHPTYEQYF 1 4439 PA-46-54 FLU 0.97 18 PA-46-54 202 4237 6 InfluenzaA PA FMYSDFHFI central memory T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*02:01 B2M MHCI -11840 chip0514_444170 -0.35 8.74 Chip3 T1D_8 T1D TGTGTGGTGAACAAGTGGCCAGGCCAGGCAGGAACTGCTCTGATCTTT CVVNKWPGQAGTALIF TRAV12-1*01 TRAJ15*01 2.0 6.0 CVVNKWPGQAGTALIF_ 1 5585 ZNT8-115-123 ZNT8 0.93 74 NEG 214 5371 4 HomoSapiens ZNT8 LLSLFSLWL Naive T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*02:01 B2M MHCI -11841 chip0514_272068 -2.99 9.67 Chip3 T1D_7 T1D TGTGCCAGCAACCCTTCCCCCCTCTCTACTAGTGGCACCGGGGAGCTGTTTTTT CASNPSPLSTSGTGELFF TRBV5-5*01 TRBJ2-2*01 53.0 2346.0 _CASNPSPLSTSGTGELFF 1 7463 PGT-178 PGT 0.95 1480 PGT-178 173 7290 3 HomoSapiens PGT LLAGIGTVPI Naive T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*02:01 B2M MHCI -11842 chip0514_819239 -1.76 7.19 Chip3 T1D_7 T1D TGTGCACCCCCCTTACCAAACTTGGAAATCAGACTTTAACCGTT CAPPLPNt?tGNQTLTV TRAV12-3*01 TRAJ48*01 4.0 300.0 TGTGCCAGCAGCTTAGCAGGACTAGTAGAGGAGACCCAGTACTTC CASSLAGLVEETQYF TRBV7-2*01 TRBJ2-5*01 13.0 484.0 CAPPLPNt?tGNQTLTV_CASSLAGLVEETQYF 1 8670 PGT-178 PGT 0.88 1480 PGT-178 172 8498 3 HomoSapiens PGT LLAGIGTVPI Naive T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*02:01 B2M MHCI -11843 chip0514_91745 -2.98 8.01 Chip3 T1D_7 T1D _ 6746 7571 CVB3-P3A CVB 0.82 77 NEG 195 7376 2 CoxsackievirusB P3A GIIYIIYKL Naive T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*02:01 B2M MHCI -11844 chip0514_330922 -4.03 9.18 Chip3 T1D_8 T1D TGTGCAATGACCTTATCTTACTTTGGCACTGCGCGATTAACCTTT CAMTLSYFGTARLTF TRAV12-3*01 TRAJ48*01 12.0 436.0 TGCAGCGTTGACCCCAACAGTCAAGAGACCCAGTACTTC CSVDPNSQETQYF TRBV29-1*01 TRBJ2-5*01 1.0 14.0 CAMTLSYFGTARLTF_CSVDPNSQETQYF 1 4767 PGT-178 PGT 0.87 1480 NEG 165 4602 2 HomoSapiens PGT LLAGIGTVPI Naive T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*02:01 B2M MHCI -11845 chip0514_242129 -4.06 9.34 Chip3 T1D_7 T1D TGTGCTCCCCCCTATTCCACCAACACCGGCATTCTACTCTTT CAPPYSTNTGILLF TRAV9-2*01 TRAJ37*01 6.0 180.0 TGTGCCAGTAGTCCATACGAGGGGGACACTGAAGCTTTCTTT CASSPYEGDTEAFF TRBV19*01 TRBJ1-1*01 15.0 749.0 CAPPYSTNTGILLF_CASSPYEGDTEAFF 1 6877 INS-14-23 INS 0.84 9 INS-14-23 198 6679 2 HomoSapiens INS LALWGPDPAA Naive T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*02:01 B2M MHCI -11846 chip0514_564064 -3.16 8.3 Chip3 T1D_8 T1D TGTGCAATGAGTATCTCTAACTTTGGAAATGAGAAATTAACCTTT CAMSISNFGNEKLTF TRAV12-3*01 TRAJ48*01 48.0 1268.0 TGCGCCAGCAGCTCGGAAGGGGCTGGGACAGTATACGAGCAGTACTTC CASSSEGAGTVYEQYF TRBV5-1*01 TRBJ2-7*01 51.0 2430.0 CAMSISNFGNEKLTF_CASSSEGAGTVYEQYF 1 5241 PGT-178 PGT 0.95 1480 PGT-178 194 5047 2 HomoSapiens PGT LLAGIGTVPI Naive T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*02:01 B2M MHCI -11847 chip0514_346729 -4.34 11.75 Chip3 T1D_8 T1D TGTGCAGAGGAAACCAGTGGCTCTAGGTTGACCTTT CAEETSGSRLTF TRAV13-2*01 TRAJ10*01 8.0 473.0 TGTGCCAGCAGCCTCGGACAGCCCCAGTTCTTC CASSLGQPQFF TRBV11-3*01 TRBJ2-1*01 18.0 1273.0 CAEETSGSRLTF_CASSLGQPQFF 1 4529 PGT-178 PGT 0.91 1480 PGT-178 178 4351 1 HomoSapiens PGT LLAGIGTVPI Naive T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*02:01 B2M MHCI -11848 chip0514_439591 12.48 7.94 Chip3 T1D_7 T1D TGTGCCAGCAGTTCACAGGGGGGAAACTATGGCTACACCTTC CASSSQGGNYGYTF TRBV6-5*01 TRBJ1-2*01 1.0 28.0 _CASSSQGGNYGYTF 2 4373 EBV-LMP2-FLY EBV 0.94 355 EBV-LMP2-FLY 219 4154 10 EBV LMP2 FLYALALLL effector memory T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*02:01 B2M MHCI -11849 chip0514_367795 -2.87 9.4 Chip3 T1D_7 T1D TGTGCCGTGAGGGATAACCAGGGAGGAAAGCTTATCTTC CAVRDNQGGKLIF TRAV12-2*01 TRAJ23*01 19.0 909.0 TGTGCCAGCAGTTACTCGGGAGAGCACACCGGGGAGCTGTTTTTT CASSYSGEHTGELFF TRBV6-5*01 TRBJ2-2*01 4.0 76.0 CAVRDNQGGKLIF_CASSYSGEHTGELFF 1 6259 ROTA-VP3 ROTA 0.62 41 NEG 183 6076 2 RotavirusA VP3 YLLPGWKL Naive T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*02:01 B2M MHCI -11850 chip0514_589029 10.58 7.58 Chip3 T1D_7 T1D TGTGACAGCAGCTTGTTCAGCAATGAGCAGTTCTTC CDSSLFSNEQFF TRBV28*01 TRBJ2-1*01 16.0 1013.0 _CDSSLFSNEQFF 1 6100 EBV-BRLF1 EBV 0.99 1264 EBV-BRLF1 206 5894 10 EBV BRLF1 YVLDHLIVV effector memory T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*02:01 B2M MHCI -11851 chip0514_90030 -3.91 8.51 Chip3 T1D_7 T1D TGTGCTGCGTTGGGGTCCGCTTCCGGGTCTGCCCTCACCTTC CAALGSASGSALTF TRAV36/DV7*01 TRAJ41*01 5.0 299.0 TGTGCCAGCAGTTAAACTCCCTCGGGTAGGGACCGCCCACGAGCAGTACTTC CASS*TPSgg??taGTAHEQYF TRBV6-5*01 TRBJ2-7*01 22.0 707.0 CAALGSASGSALTF_CASS*TPSgg??taGTAHEQYF 1 7264 GAG-77-86 HIV 0.74 15 GAG-77-86 205 7059 2 HIV-1 GAG SLYNTVATLY Naive T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*02:01 B2M MHCI -11852 chip0514_97943 -3.72 11.43 Chip3 tet_neg TGTGCTGTGAGCGTTCCTTCTTCTGGTTCTGCGCGGCACCTGACCTTT CAVSVPSSGSARHLTF TRAV3*01 TRAJ22*01 7.0 162.0 TGTGCCAGCAGTCCTGGGGGGGCTAGTGAGCAGTTCTTC CASSPGGASEQFF TRBV12-3*01,TRBV12-4*01 TRBJ2-1*01 25.0 1939.0 CAVSVPSSGSARHLTF_CASSPGGASEQFF 1 4986 PREINS-17-24 INS 0.62 2 NEG 193 4793 1 HomoSapiens PREINS WGPDPAAA Naive T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*02:01 B2M MHCI -11853 chip0514_675777 -2.48 10.11 Chip3 T1D_8 T1D TGTGCTTTCATGGAGATAAACTATCAGTTAATCTGG CAFMEINYQLIW TRAV38-1*01 TRAJ33*01 2.0 114.0 TGTGCCAGCGGAACTAGCGGGAGGACGAGAGATACGCAGTATTTT CASGTSGRTRDTQYF TRBV6-1*01 TRBJ2-3*01 9.0 300.0 CAFMEINYQLIW_CASGTSGRTRDTQYF 1 6098 GP160-311-320 HIV 0.56 109 NEG 176 5922 3 HIV-1 GP160 RGPGRAFVTI Naive T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*02:01 B2M MHCI -11854 chip0514_784930 1.0 8.61 Chip3 T1D_7 T1D TGTGCCGTGGGCCATGAGTCAGGAGGAGGTGCTGACGGACTCACCCTT CAVGHESGGGADGLTL TRAV12-2*01 TRAJ45*01 32.0 1021.0 TGTGCCAGCAACTACGGGGAGGGTGGGGGGTATGGCTACACCTTC CASNYGEGGGYGYTF TRBV6-1*01 TRBJ1-2*01 10.0 216.0 CAVGHESGGGADGLTL_CASNYGEGGGYGYTF 1 5688 PGT-178 PGT 0.96 1480 PGT-178 165 5523 4 HomoSapiens PGT LLAGIGTVPI Naive T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*02:01 B2M MHCI -11855 chip0514_767330 -1.81 9.01 Chip3 T1D_7 T1D TGTGCTTATAGGAGCCAAAATTCCGGGTATGCACTCAACTTC CAYRSQNSGYALNF TRAV38-2/DV8*01 TRAJ41*01 4.0 124.0 TGCAGCGTTGACCCCGGCGGCTATGGCTACACCTTC CSVDPGGYGYTF TRBV29-1*01 TRBJ1-2*01 62.0 4483.0 CAYRSQNSGYALNF_CSVDPGGYGYTF 1 7547 IAPP-5-13 IAPP 1.0 30 IAPP-5-13 172 7375 3 HomoSapiens IAPP KLQVFLIVL Naive T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*02:01 B2M MHCI -11856 chip0514_770727 -1.95 8.27 Chip3 T1D_8 T1D TGTGCCCCTGGCTCTGGCAACACAGGCAAACTAATCTTT CAPGSGNTGKLIF TRAV20*01 TRAJ37*01 25.0 1232.0 TGTGCCAGCAGCCAAGAGGGAGCCTACACCGGGGAGCTGTTTTCT CASSQEGAYTGELFS TRBV4-2*01 TRBJ2-2*01 2.0 40.0 CAPGSGNTGKLIF_CASSQEGAYTGELFS 1 6842 IGRP-152-160-WLI IGRP 0.85 27 IGRP-152-160-WLI 168 6674 3 HomoSapiens IGRP FLWSVFWLI Naive T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*02:01 B2M MHCI -11857 chip0514_675103 -1.64 11.47 Chip3 T1D_7 T1D TGTGCCGTGAACCCGCGGGGGTGCCGGGGATATTTCATCTTT CAVNPRGCRGYFIF TRAV12-2*01 TRAJ42*01 10.0 270.0 TGTGCCAGCAGCAAAGGGGCGTTACAAGGAACCGGGGAGCTGTTTTTT CASSKGALQGTGELFF TRBV6-1*01 TRBJ2-2*01 3.0 25.0 CAVNPRGCRGYFIF_CASSKGALQGTGELFF 1 5126 PGT-178 PGT 1.0 1480 PGT-178 167 4959 3 HomoSapiens PGT LLAGIGTVPI Naive T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*02:01 B2M MHCI -11858 chip0514_127967 -4.03 7.41 Chip3 T1D_7 T1D TGTGCCAGTAGTATATCCGGCGGTTACGAGCAGTACTTC CASSISGGYEQYF TRBV19*01 TRBJ2-7*01 15.0 757.0 _CASSISGGYEQYF 1 8293 GAD65-114-123 GAD65 0.74 5 GAD65-114-123 182 8111 2 HomoSapiens GAD65 VMNILLQYVV Naive T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*02:01 B2M MHCI -11859 chip0514_842388 -3.75 9.15 Chip3 T1D_8 T1D TGTGCCAGCAGCCCACAGCTTAGAGAGCAGTACTTC CASSPQLREQYF TRBV7-9*01 TRBJ2-7*01 37.0 1766.0 _CASSPQLREQYF 1 6392 ZNT8-16-24 ZNT8 0.88 39 ZNT8-16-24 171 6221 2 HomoSapiens ZNT8 KMYAFTLES Naive T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*02:01 B2M MHCI -11860 chip0514_234671 -0.97 6.82 Chip3 T1D_7 T1D TGTGCTTATAATACCGGCACTGCCAGTAAACTCACCTTT CAYNTGTASKLTF TRAV38-1*01 TRAJ44*01 4.0 296.0 CAYNTGTASKLTF_ 1 8406 M1 FLU 0.65 1250 NEG 191 8215 3 InfluenzaA M1 GILGFVFTL Naive T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*02:01 B2M MHCI -11861 chip0514_12555 -0.58 10.43 Chip3 T1D_7 T1D TGTGCCAGCAGTCCAGGGGGGTCCACTGAAGCTTTCTTT CASSPGGSTEAFF TRBV28*01 TRBJ1-1*01 17.0 902.0 _CASSPGGSTEAFF 1 7197 VPR-59-67 HIV 0.96 16 VPR-59-67 173 7024 3 HIV-1 VPR AIIRILQQL Naive T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*02:01 B2M MHCI -11862 chip0514_673925 -2.5 10.38 Chip3 T1D_8 T1D TGTGCAATGAGCATATCTAACTTTGGGCTTGAGTGTTTATCCTTT CAMSISNFGLECLSF TRAV12-3*01 TRAJ48*01 20.0 554.0 TGCGCCAGCAGCCCCGAGGGACCCGCGAACTATGGCTACACCTTC CASSPEGPANYGYTF TRBV4-1*01 TRBJ1-2*01 14.0 717.0 CAMSISNFGLECLSF_CASSPEGPANYGYTF 1 4571 PGT-178 PGT 0.76 1480 PGT-178 168 4403 3 HomoSapiens PGT LLAGIGTVPI Naive T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*02:01 B2M MHCI -11863 chip0514_783690 -1.17 7.47 Chip3 T1D_7 T1D _ 6746 7832 GAG-77-86 HIV 0.69 15 NEG 187 7645 3 HIV-1 GAG SLYNTVATLY Naive T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*02:01 B2M MHCI -11864 chip0514_734903 6.05 12.7 Chip3 T1D_8 T1D TGTGCAATGAGAGGAGATGCTGGTGGTACTAGCTATGGAAAGCTGACATTT CAMRGDAGGTSYGKLTF TRAV14/DV4*01 TRAJ52*01 35.0 882.0 TGTGCCAGTAGTTTCTATAGCAATCAGCCCCAGCATTTT CASSFYSNQPQHF TRBV19*01 TRBJ1-5*01 23.0 1085.0 CAMRGDAGGTSYGKLTF_CASSFYSNQPQHF 1 5728 M1 FLU 0.99 1250 M1 177 5551 7 InfluenzaA M1 GILGFVFTL transitional T cells between effector and memory populations PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*02:01 B2M MHCI -11865 chip0514_194135 -3.73 9.43 Chip3 T1D_8 T1D GGCATCGCCAGAGTCTCGGCCAGGGAGGCACGCTTATCTTC GIARVSgc?QGGTLIF TRAV26-1*01 TRAJ23*01 34.0 2102.0 TGCAGCGGCTGGACCAGTGCTAATGAAAAACTGTTTTTT CSGWTSANEKLFF TRBV29-1*01 TRBJ1-4*01 110.0 6172.0 GIARVSgc?QGGTLIF_CSGWTSANEKLFF 1 6065 GP160-311-320 HIV 0.93 109 GP160-311-320 179 5886 2 HIV-1 GP160 RGPGRAFVTI Naive T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*02:01 B2M MHCI -11866 chip0514_270212 14.72 12.84 Chip3 T1D_7 T1D TGTGCCAGCAGTTCCCTATCGGGAAGCGGTCAGCCCCAGCATTTT CASSSLSGSGQPQHF TRBV28*01 TRBJ1-5*01 12.0 665.0 _CASSSLSGSGQPQHF 23 3029 EBV-BRLF1 EBV 0.98 1264 EBV-BRLF1 189 2840 12 EBV BRLF1 YVLDHLIVV effector T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*02:01 B2M MHCI -11867 chip0514_104064 9.81 10.29 Chip3 T1D_8 T1D TGCAGTGCTAGAGATGGGACAGGGAATGGCTACACCTTC CSARDGTGNGYTF TRBV20-1*01 TRBJ1-2*01 17.0 662.0 _CSARDGTGNGYTF 14 5300 EBV-BLMF1 EBV 1.0 2531 EBV-BLMF1 189 5111 9 EBV BLMF1 GLCTLVAML effector memory T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*02:01 B2M MHCI -11868 chip0514_866036 -0.99 7.37 Chip3 T1D_7 T1D TGTGCCAGCACCTTCTGGGGGACGGAAGGAACTGAAGCTTTCTTT CASTFWGTEGTEAFF TRBV6-1*01 TRBJ1-1*01 27.0 1060.0 _CASTFWGTEGTEAFF 1 5345 PGT-178 PGT 0.8 1480 PGT-178 165 5180 4 HomoSapiens PGT LLAGIGTVPI Naive T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*02:01 B2M MHCI -11869 chip0514_342911 -2.0 9.88 Chip3 T1D_7 T1D TGTGCGGCCCCATATGGAAACAAACTGGTCTTT CAAPYGNKLVF TRAV38-1*01 TRAJ47*01 7.0 748.0 CAAPYGNKLVF_ 1 6450 CVB3-P3A CVB 1.0 77 CVB3-P3A 161 6289 3 CoxsackievirusB P3A GIIYIIYKL Naive T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*02:01 B2M MHCI -11870 chip0514_873591 -1.03 6.86 Chip3 T1D_7 T1D TGTGCAGCAAGCGAGGATGCGGAATAACAATGACATGCGCTTT CAASEDA??gNNNDMRF TRAV29/DV5*01 TRAJ43*01 1.0 46.0 TGTGCCAGCAGCTTGTTTGGAGCGAACACTGAAGCTTTCTTT CASSLFGANTEAFF TRBV11-3*01 TRBJ1-1*01 15.0 618.0 CAASEDA??gNNNDMRF_CASSLFGANTEAFF 1 7719 EBV-LMP1-2 EBV 0.5 41 NEG 188 7531 3 EBV LMP1 YLQQNWWTL Naive T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*02:01 B2M MHCI -11871 chip0514_199392 -2.07 9.19 Chip3 T1D_7 T1D GCAGCCGTGAACGGAAGCGCTAACAACTAAAAATAAATCTTC AAVNGSANN*K*IF TRAV12-2*01 TRAJ12*01 2.0 12.0 TGTGCCAGCAGCGACGGACAGCCGGCCACCATATATTTT CASSDGQPATIYF TRBV13*01 TRBJ1-3*01 16.0 486.0 AAVNGSANN*K*IF_CASSDGQPATIYF 1 9073 ROTA-VP3 ROTA 0.91 41 ROTA-VP3 171 8902 3 RotavirusA VP3 YLLPGWKL Naive T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*02:01 B2M MHCI -11872 chip0514_678460 -2.65 12.68 Chip3 T1D_7 T1D TGTGCCAGCAGCTATGGGTCTCGGGAGACCCAGTACTTC CASSYGSRETQYF TRBV7-6*01 TRBJ2-5*01 6.0 397.0 _CASSYGSRETQYF 1 4894 EBV-LMP1-1 EBV 0.87 237 EBV-LMP1-1 201 4693 1 EBV LMP1 YLLEMLWRL Naive T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*02:01 B2M MHCI -11873 chip0514_195216 -1.91 12.11 Chip3 T1D_7 T1D TGTGCCAGCAGTCCTCAGGGTGCGGGTGAAGCTTTCTTT CASSPQGAGEAFF TRBV28*01 TRBJ1-1*01 13.0 969.0 _CASSPQGAGEAFF 1 5246 HCVNS3-1073-1081 HCV 0.7 36 NEG 200 5046 1 HCV NS3 CINGVCWTV Naive T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*02:01 B2M MHCI -11874 chip0514_462117 -1.99 9.28 Chip3 T1D_8 T1D TGTGCTTTCATGAACCTTAATGCTGGTGGTACTAGCTATGGAAAGCTGACATTT CAFMNLNAGGTSYGKLTF TRAV38-1*01 TRAJ52*01 11.0 209.0 TGTGCCAGCAGCGTAAGGGACGGCACCGGGGAGCTGTTTTTT CASSVRDGTGELFF TRBV9*01 TRBJ2-2*01 6.0 162.0 CAFMNLNAGGTSYGKLTF_CASSVRDGTGELFF 1 7351 POL-334-342 HIV 0.95 12 POL-334-342 176 7175 3 HIV-1 POL VIYQYMDDL Naive T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*02:01 B2M MHCI -11875 chip0514_308317 -2.65 9.47 Chip3 T1D_7 T1D TGTGCAATGAGCGGGGATGACAAGATCATCTTT CAMSGDDKIIF TRAV12-3*01 TRAJ30*01 2.0 22.0 CAMSGDDKIIF_ 1 6200 ZNT8-293-300 ZNT8 0.8 17 NEG 194 6006 2 HomoSapiens ZNT8 LAVDGVLSV Naive T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*02:01 B2M MHCI -11876 chip0514_145714 12.35 8.15 Chip3 T1D_8 T1D TGCAGTGCTAGAGACCGGACAGGGAATGGCTACACCTTC CSARDRTGNGYTF TRBV20-1*01 TRBJ1-2*01 5.0 176.0 _CSARDRTGNGYTF 7 4770 EBV-BLMF1 EBV 0.92 2531 EBV-BLMF1 216 4554 10 EBV BLMF1 GLCTLVAML effector memory T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*02:01 B2M MHCI -11877 chip0514_320094 -0.36 9.06 Chip3 T1D_8 T1D TGTGCCAGCAGTTACCCGCCGGATCCCTACGAGCAGTACTTC CASSYPPDPYEQYF TRBV6-2*01,TRBV6-3*01 TRBJ2-7*01 14.0 720.0 _CASSYPPDPYEQYF 1 5886 MART1-27-35 MART1 0.78 7 NEG 173 5713 4 HomoSapiens MART1 AAGIGILTV Naive T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*02:01 B2M MHCI -11878 chip0514_320808 -3.78 9.54 Chip3 T1D_7 T1D TGTGCCAGCAGCTTAGATCATTGCAGGAAACCAATGAGCAGTTCTTC CASSLDHtg?QETNEQFF TRBV11-2*01 TRBJ2-1*01 8.0 271.0 _CASSLDHtg?QETNEQFF 1 5271 MART1-ALA MART1 0.64 269 MART1-ALA 170 5101 2 HomoSapiens MART1 ALAGIGILTV Naive T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*02:01 B2M MHCI -11879 chip0514_261884 13.35 8.63 Chip3 T1D_7 T1D TGTGCCGTGAGTTCAGGATACAGCACCCTCACCTTT CAVSSGYSTLTF TRAV8-1*01 TRAJ11*01 5.0 250.0 TGTGCCAGCAGTTCCCTATCGGGAAGCGGTCAGCCCCAGCATTTT CASSSLSGSGQPQHF TRBV28*01 TRBJ1-5*01 38.0 1203.0 CAVSSGYSTLTF_CASSSLSGSGQPQHF 12 3846 EBV-BRLF1 EBV 0.92 1264 EBV-BRLF1 180 3666 10 EBV BRLF1 YVLDHLIVV effector memory T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*02:01 B2M MHCI -11880 chip0514_250005 6.03 12.02 Chip3 T1D_7 T1D TGTGCCAGTAGTATCAGGAGCTCCTACGAGCAGTACTTC CASSIRSSYEQYF TRBV19*01 TRBJ2-7*01 10.0 495.0 _CASSIRSSYEQYF 36 6323 M1 FLU 0.93 1250 M1 170 6153 7 InfluenzaA M1 GILGFVFTL transitional T cells between effector and memory populations PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*02:01 B2M MHCI -11881 chip0514_587667 -3.57 7.56 Chip3 T1D_7 T1D TGTGCAATGAGCCAGCTTAATTCAGGAAACACACCTCTTGTCTTT CAMSQLNSGNTPLVF TRAV14/DV4*01 TRAJ29*01 33.0 1344.0 TGTGCCAGCAGTTCTAGCGGCTCGACCGGGGAGCTGTTTTTT CASSSSGSTGELFF TRBV6-5*01 TRBJ2-2*01 18.0 913.0 CAMSQLNSGNTPLVF_CASSSSGSTGELFF 1 7572 HCVNS3-1406-1415 HCV 0.71 12 HCVNS3-1406-1415 193 7379 2 HCV NS3 KLVALGINAV Naive T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*02:01 B2M MHCI -11882 chip0514_284007 -1.13 7.39 Chip3 T1D_7 T1D TGTGCAATGAGTATATCTAACTTTGGAAATGAGAAATTAACCTTT CAMSISNFGNEKLTF TRAV12-3*01 TRAJ48*01 31.0 815.0 TGTGCCAGCAGTACGGGACAGGGAATCCCCTACGAGCAGTACTTC CASSTGQGIPYEQYF TRBV12-3*01,TRBV12-4*01 TRBJ2-7*01 29.0 1880.0 CAMSISNFGNEKLTF_CASSTGQGIPYEQYF 1 7389 PGT-178 PGT 0.82 1480 PGT-178 170 7219 4 HomoSapiens PGT LLAGIGTVPI Naive T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*02:01 B2M MHCI -11883 chip0514_692076 -2.15 12.39 Chip3 T1D_7 T1D _ 6746 4546 GAD65-476-484 GAD65 1.0 8 NEG 172 4374 1 HomoSapiens GAD65 ELAEYLYNI Naive T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*02:01 B2M MHCI -11884 chip0514_754334 -1.38 8.99 Chip3 T1D_7 T1D TGTGTGGTGACCCTATCTAACTTTGGAAATGAGAAATTAACCTTT CVVTLSNFGNEKLTF TRAV12-1*01 TRAJ48*01 65.0 2270.0 TGTGCCAGCAGCTTGCAAATTAGGGGAACCGGGGAGCTGTTTTTT CASSLQIRGTGELFF TRBV5-6*01 TRBJ2-2*01 88.0 2926.0 CVVTLSNFGNEKLTF_CASSLQIRGTGELFF 1 6839 PGT-178 PGT 0.64 1480 PGT-178 184 6655 4 HomoSapiens PGT LLAGIGTVPI Naive T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*02:01 B2M MHCI -11885 chip0514_8810 -2.9 12.7 Chip3 T1D_7 T1D TGTGCAATGGGGATATCTAACTTTGGAAATGAGAAATTAACCTTT CAMGISNFGNEKLTF TRAV12-3*01 TRAJ48*01 24.0 695.0 TGTGCCTGGAGTGGCCGACAGTTATCTGGAAACACCATATATTTT CAWSGRQLSGNTIYF TRBV30*01 TRBJ1-3*01 54.0 1977.0 CAMGISNFGNEKLTF_CAWSGRQLSGNTIYF 1 5837 PGT-178 PGT 0.6 1480 PGT-178 186 5651 1 HomoSapiens PGT LLAGIGTVPI Naive T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*02:01 B2M MHCI -11886 chip0514_380142 7.39 12.77 Chip3 T1D_8 T1D TGTGCCGTGAACATGGGGAGAGAAAGCCAAGGAAATCTCATCTTT CAVNMGRESQGNLIF TRAV12-2*01 TRAJ42*01 52.0 1869.0 CAVNMGRESQGNLIF_ 1 3556 M1 FLU 0.94 1250 M1 160 3396 7 InfluenzaA M1 GILGFVFTL transitional T cells between effector and memory populations PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*02:01 B2M MHCI -11887 chip0514_740042 15.21 10.93 Chip3 T1D_7 T1D TGTGCCGTGAAGGACACCGACAAGCTCATCTTT CAVKDTDKLIF TRAV8-1*01 TRAJ34*01 16.0 1438.0 TGTGCCAGCAGTTTTAATGTGGGGACCGTTCCCTACGAGCAGTACTTC CASSFNVGTVPYEQYF TRBV27*01 TRBJ2-7*01 31.0 1724.0 CAVKDTDKLIF_CASSFNVGTVPYEQYF 1 3672 EBV-BRLF1 EBV 1.0 1264 NEG 180 3492 12 EBV BRLF1 YVLDHLIVV effector T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*02:01 B2M MHCI -11888 chip0514_588452 -0.94 8.67 Chip3 T1D_8 T1D TGTGCCGTGAAGGTCCAGGGAGCCCAGAAGCTGGTATCT CAVKVQGAQKLVS TRAV12-2*01 TRAJ54*01 1.0 22.0 CAVKVQGAQKLVS_ 1 4324 ZNT8-107-115 ZNT8 0.67 10 NEG 189 4135 4 HomoSapiens ZNT8 LLIDLTSFL Naive T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*02:01 B2M MHCI -11889 chip0514_286452 5.54 12.57 Chip3 T1D_7 T1D TGTGCCAGCAGTTTAAGCTCCGGTCAGCCCCAGCATTTT CASSLSSGQPQHF TRBV27*01 TRBJ1-5*01 40.0 2778.0 _CASSLSSGQPQHF 1 5019 PA-46-54 FLU 0.95 18 PA-46-54 196 4823 7 InfluenzaA PA FMYSDFHFI transitional T cells between effector and memory populations PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*02:01 B2M MHCI -11890 chip0514_67294 -3.04 11.69 Chip3 T1D_7 T1D TGTGCCGTGAAGAATCGGGCAGGAACTGCTCTGATCTTT CAVKNRAGTALIF TRAV12-2*01 TRAJ15*01 12.0 839.0 CAVKNRAGTALIF_ 1 5488 PGT-178 PGT 0.81 1480 NEG 162 5326 1 HomoSapiens PGT LLAGIGTVPI Naive T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*02:01 B2M MHCI -11891 chip0514_101000 15.94 10.15 Chip3 T1D_8 T1D TGTGCCAGCAGTGGTGACACGACTAGCGCCTACAATGAGCAGTTCTTC CASSGDTTSAYNEQFF TRBV27*01 TRBJ2-1*01 45.0 2880.0 _CASSGDTTSAYNEQFF 2 2522 EBV-BRLF1 EBV 0.8 1264 NEG 179 2343 12 EBV BRLF1 YVLDHLIVV effector T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*02:01 B2M MHCI -11892 chip0514_259879 8.7 10.74 Chip3 T1D_7 T1D TGTGCCCCGCCGGGGGGGGCCATTCAGTACTTC CAPPGGAIQYF TRBV28*01 TRBJ2-4*01 2.0 99.0 _CAPPGGAIQYF 1 5180 EBV-BRLF1 EBV 0.93 1264 EBV-BRLF1 174 5006 8 EBV BRLF1 YVLDHLIVV effector memory T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*02:01 B2M MHCI -11893 chip0514_285479 14.73 11.12 Chip3 T1D_7 T1D TGTGCCGTGAGTTCAGGATACAGCACCCTCACCTTT CAVSSGYSTLTF TRAV8-1*01 TRAJ11*01 8.0 567.0 TGTGCAGCAAGGGGAGGGGTTACCAGAAAGTTACCTTT CAARGGg?tYQKVTF TRAV13-1*01 TRAJ13*01 8.0 507.0 0.44 TGTGCCAGCAGTTCCCTATCGGGAAGCGGTCAGCCCCAGCATTTT CASSSLSGSGQPQHF TRBV28*01 TRBJ1-5*01 6.0 202.0 CAVSSGYSTLTF_CASSSLSGSGQPQHF 12 3398 EBV-BRLF1 EBV 0.91 1264 EBV-BRLF1 196 3202 12 EBV BRLF1 YVLDHLIVV effector T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*02:01 B2M MHCI -11894 chip0514_775563 -4.27 8.52 Chip3 T1D_7 T1D TGTGCTGTGAGGCCTGGTACTGGAGGCTTTTTAACTATCTTT CAVRPGTGGFLTIF TRAV21*01 TRAJ9*01 10.0 696.0 TGTGCTGGGCAGGGGTAACCAGTTCTATCTT CAGQG??tNQFYL TRAV35*01 TRAJ49*01 6.0 1147.0 0.27 CAVRPGTGGFLTIF_ 1 5158 PGT-178 PGT 0.7 1480 NEG 155 5003 2 HomoSapiens PGT LLAGIGTVPI Naive T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*02:01 B2M MHCI -11895 chip0514_269896 12.51 10.45 Chip3 T1D_7 T1D TGTGCCGTGAAGGACACCGACAAGCTCATCTTT CAVKDTDKLIF TRAV8-1*01 TRAJ34*01 14.0 1426.0 TGCAGTGCTACAGACAGTACCTACAATGAGCAGTTCTTC CSATDSTYNEQFF TRBV20-1*01 TRBJ2-1*01 11.0 794.0 CAVKDTDKLIF_CSATDSTYNEQFF 8 6649 EBV-BRLF1 EBV 0.95 1264 EBV-BRLF1 200 6449 9 EBV BRLF1 YVLDHLIVV effector memory T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*02:01 B2M MHCI -11896 chip0514_855404 -2.91 11.26 Chip3 T1D_7 T1D _ 6746 6406 MART1-ALA MART1 0.86 269 MART1-ALA 194 6212 4 HomoSapiens MART1 ALAGIGILTV Naive T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*02:01 B2M MHCI -11897 chip0514_817820 13.38 8.33 Chip3 T1D_7 T1D TGCAGCACCCAAGAGGGTGGATATGGCTACACCTTC CSTQEGGYGYTF TRBV29-1*01 TRBJ1-2*01 72.0 4030.0 _CSTQEGGYGYTF 4 5272 EBV-BLMF1 EBV 0.77 2531 EBV-BLMF1 192 5080 10 EBV BLMF1 GLCTLVAML effector memory T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*02:01 B2M MHCI -11898 chip0514_2012 15.97 10.86 Chip3 T1D_7 T1D TGTGCCAGCAGTTCCTTTCACATACAGGGGGGCTACGAGCAGTACTTC CASSSFHIQGGYEQYF TRBV28*01 TRBJ2-7*01 41.0 2113.0 _CASSSFHIQGGYEQYF 5 3701 IGRP-265-273 IGRP 0.76 34 IGRP-265-273 178 3523 12 HomoSapiens IGRP VLFGLGFAI effector T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*02:01 B2M MHCI -11899 chip0514_83873 11.48 7.12 Chip3 T1D_7 T1D TGCGCCAGCAGTGAGGACGGGATGAACACTGAAGCTTTCTTT CASSEDGMNTEAFF TRBV10-2*01 TRBJ1-1*01 42.0 1543.0 _CASSEDGMNTEAFF 10 8289 EBV-LMP2A EBV 0.92 700 EBV-LMP2A 180 8109 10 EBV LMP2A CLGGLLTMV effector memory T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*02:01 B2M MHCI -11900 chip0514_806576 -1.25 9.26 Chip3 T1D_7 T1D TGTGCAATGAGCGGGTCAAACTTTGGAAATGAGAAATTAACCTTT CAMSGSNFGNEKLTF TRAV12-3*01 TRAJ48*01 13.0 628.0 TGTGCCAGCAGCCAAGCCAGTAGCGGAGACGTCTCCTACGAGCAGTACTTC CASSQASSGDVSYEQYF TRBV3-1*01 TRBJ2-7*01 44.0 2073.0 CAMSGSNFGNEKLTF_CASSQASSGDVSYEQYF 1 6818 PGT-178 PGT 0.68 1480 PGT-178 166 6652 3 HomoSapiens PGT LLAGIGTVPI Naive T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*02:01 B2M MHCI -11901 chip0514_579201 14.31 10.66 Chip3 T1D_8 T1D TGTGCAGAGCGGAGCGGGGACTCAGGCAAACTAATCTTT CAERSGDSGKLIF TRAV5*01 TRAJ37*01 10.0 659.0 TGCAGCGTGGGGACAGGGGGCACTAATGAAAAACTGTTTTTT CSVGTGGTNEKLFF TRBV29-1*01 TRBJ1-4*01 39.0 1529.0 CAERSGDSGKLIF_CSVGTGGTNEKLFF 1 3976 EBV-BLMF1 EBV 1.0 2531 NEG 192 3784 12 EBV BLMF1 GLCTLVAML effector T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*02:01 B2M MHCI -11902 chip0514_126847 5.37 10.92 Chip3 T1D_7 T1D TGTGTGGTGCCCCGGGGGGGAGGAAGCTACATACCTACATTT CVVPRGGGSYIPTF TRAV12-1*01 TRAJ6*01 24.0 1041.0 TGTGCCAGCAACCAAGAGGGAGGGGGCGGTTACGAGCAGTACTTC CASNQEGGGGYEQYF TRBV4-2*01 TRBJ2-7*01 16.0 906.0 CVVPRGGGSYIPTF_CASNQEGGGGYEQYF 1 5238 EBV-LMP1-2 EBV 0.89 41 EBV-LMP1-2 186 5052 6 EBV LMP1 YLQQNWWTL central memory T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*02:01 B2M MHCI -11903 chip0514_364763 -3.27 8.93 Chip3 T1D_7 T1D TGTGCCGTCCGATTAGGAAACCAGTGGCTCTAGCTTGACCTTT CAVRLGN??cSGSSLTF TRAV41*01 TRAJ10*01 7.0 413.0 TGCGCCAGCAGCCAAGATGATTTAATCTCTGGAAACACCACATATTTT CASSQDDLISGNTTYF TRBV4-3*01 TRBJ1-3*01 24.0 751.0 CAVRLGN??cSGSSLTF_CASSQDDLISGNTTYF 1 5821 VPR-59-67 HIV 0.79 16 VPR-59-67 164 5657 2 HIV-1 VPR AIIRILQQL Naive T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*02:01 B2M MHCI -11904 chip0514_765128 -1.3 9.86 Chip3 T1D_7 T1D TGTGCCAGCAGTTTAAGCTGGGATCTCAGCGGTACCTACAATGAGCAGTTCTTC CASSLSWDLSGTYNEQFF TRBV28*01 TRBJ2-1*01 49.0 2067.0 _CASSLSWDLSGTYNEQFF 1 7629 HCV-35-44 HCV 0.71 13 NEG 163 7466 3 HCV POL YLLPRRGPRL Naive T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*02:01 B2M MHCI -11905 chip0514_70719 -3.82 9.84 Chip3 T1D_7 T1D TGTGCCAGCAGCGGGGGACAGGGTGATGAAAAACTGTTTTTT CASSGGQGDEKLFF TRBV9*01 TRBJ1-4*01 27.0 1159.0 _CASSGGQGDEKLFF 1 6853 IGRP-152-160-WLI IGRP 0.85 27 IGRP-152-160-WLI 155 6698 2 HomoSapiens IGRP FLWSVFWLI Naive T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*02:01 B2M MHCI -11906 chip0514_274304 0.4 8.73 Chip3 T1D_8 T1D TGCGCCAGCAGTAATCACCGGGAAGCTTTCTTT CASSNHREAFF TRBV10-1*01 TRBJ1-1*01 2.0 54.0 _CASSNHREAFF 1 5757 CVB3-P3A CVB 0.91 77 CVB3-P3A 189 5568 4 CoxsackievirusB P3A GIIYIIYKL Naive T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*02:01 B2M MHCI -11907 chip0514_239786 14.91 10.24 Chip3 T1D_8 T1D TGTGCCGTGAAGGACACCGACAAGCTCATCTTT CAVKDTDKLIF TRAV8-1*01 TRAJ34*01 35.0 3273.0 TGTGCCAGCAGTTACTCGGAGGGGCTTTTAACCGGGGAGCTGTTTTTT CASSYSEGLLTGELFF TRBV6-2*01,TRBV6-3*01 TRBJ2-2*01 12.0 402.0 CAVKDTDKLIF_CASSYSEGLLTGELFF 1 4068 EBV-BRLF1 EBV 0.97 1264 EBV-BRLF1 204 3864 12 EBV BRLF1 YVLDHLIVV effector T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*02:01 B2M MHCI -11908 chip0514_466236 8.63 10.5 Chip3 T1D_7 T1D TGTGCCAGCAGTTTGACAGGGAATTCACCCCTCCACTTT CASSLTGNSPLHF TRBV27*01 TRBJ1-6*01 7.0 157.0 _CASSLTGNSPLHF 1 6404 EBV-BRLF1 EBV 0.85 1264 EBV-BRLF1 191 6213 8 EBV BRLF1 YVLDHLIVV effector memory T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*02:01 B2M MHCI -11909 chip0514_28662 12.61 7.07 Chip3 T1D_7 T1D TTTGCTCCTGGGGGTGGGGTTACCAGAAAGTTACCTTT FAPGGGg?tYQKVTF TRAV13-1*01 TRAJ13*01 9.0 903.0 TGTGCCAGCAGTTCCCTATCGGGAAGCGGTCAGCCCCAGCATTTT CASSSLSGSGQPQHF TRBV28*01 TRBJ1-5*01 10.0 389.0 FAPGGGg?tYQKVTF_CASSSLSGSGQPQHF 1 4121 EBV-BRLF1 EBV 0.96 1264 EBV-BRLF1 186 3935 10 EBV BRLF1 YVLDHLIVV effector memory T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*02:01 B2M MHCI -11910 chip0514_791582 -1.22 7.11 Chip3 T1D_7 T1D TGTGCAGCAAGCGGTATAGCCTCAGGAACCTACAAATCCATCTTT CAASGIASGTYKSIF TRAV29/DV5*01 TRAJ40*01 1.0 31.0 TGTGCCACCAGTGATTTGATCGGGGAGCTGTTTTTT CATSDLIGELFF TRBV24-1*01 TRBJ2-2*01 23.0 1413.0 CAASGIASGTYKSIF_CATSDLIGELFF 1 8235 NEF-136-145 FLU 0.62 9 NEF-136-145 147 8088 3 InfluenzaA NEF PLTFGWCYKL Naive T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*02:01 B2M MHCI -11911 chip0514_422914 -2.37 8.02 Chip3 T1D_8 T1D TGTGCCGCCTACGGGCAAACTGGGGCAAACAACCTCTTCTTT CAAYGQTGANNLFF TRAV12-2*01 TRAJ36*01 1.0 165.0 TGTGCCAGCAGCCGATTCACCTACGAGCAGTACTTC CASSRFTYEQYF TRBV14*01 TRBJ2-7*01 14.0 711.0 CAAYGQTGANNLFF_CASSRFTYEQYF 1 5648 IGRP-211-219 IGRP 0.92 13 IGRP-211-219 189 5459 3 HomoSapiens IGRP NLFLFLFAV Naive T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*02:01 B2M MHCI -11912 chip0514_838782 15.48 10.82 Chip3 T1D_8 T1D TGTGCGGCAGCTAACTATGGTCAGAATTTTGTCTTT CAAANYGQNFVF TRAV27*01 TRAJ26*01 39.0 1908.0 CAAANYGQNFVF_ 1 2975 EBV-BRLF1 EBV 0.95 1264 EBV-BRLF1 182 2793 12 EBV BRLF1 YVLDHLIVV effector T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*02:01 B2M MHCI -11913 chip0514_577678 8.56 11.64 Chip3 T1D_7 T1D TGTGCCGTGAAAAACACCGACAAGCTCATCCAT CAVKNTDKLIH TRAV8-1*01 TRAJ34*01 2.0 253.0 TGTGCCAGCAGTTCCCTCGGGACTAGCGGGGGGGCCATTCTAGGGGAGCTGTTTTTT CASSSLGTSGGAILGELFF TRBV6-2*01,TRBV6-3*01 TRBJ2-2*01 18.0 542.0 CAVKNTDKLIH_CASSSLGTSGGAILGELFF 1 4974 EBV-BRLF1 EBV 0.94 1264 EBV-BRLF1 179 4795 7 EBV BRLF1 YVLDHLIVV transitional T cells between effector and memory populations PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*02:01 B2M MHCI -11914 chip0514_738701 11.94 7.12 Chip3 T1D_7 T1D TGTGCTACGGTCGGCTCTTCAGGATACAGCACCCTCACCTTT CATVGSSGYSTLTF TRAV17*01 TRAJ11*01 22.0 1579.0 TGTGCCAGCACCGCGCAGGGGGGCAACATTCAGTACTTC CASTAQGGNIQYF TRBV6-1*01 TRBJ2-4*01 9.0 503.0 CATVGSSGYSTLTF_CASTAQGGNIQYF 2 5393 EBV-LMP2-FLY EBV 0.91 355 EBV-LMP2-FLY 189 5204 10 EBV LMP2 FLYALALLL effector memory T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*02:01 B2M MHCI -11915 chip0514_276116 14.68 8.51 Chip3 T1D_7 T1D TGTGCCAGCAGTTCCCTATCGGGAAGCGGTCAGCCCCAGCATTTT CASSSLSGSGQPQHF TRBV28*01 TRBJ1-5*01 10.0 488.0 _CASSSLSGSGQPQHF 23 3192 EBV-BRLF1 EBV 0.92 1264 EBV-BRLF1 181 3011 12 EBV BRLF1 YVLDHLIVV effector T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*02:01 B2M MHCI -11916 chip0514_99044 -3.3 11.32 Chip3 T1D_8 T1D TGTGCCATCTGTGCCGGGCAGGGTGAAGAAAAACTGTTTTTT CAICAGQGEEKLFF TRBV10-3*01 TRBJ1-4*01 14.0 574.0 _CAICAGQGEEKLFF 1 4206 IGRP-152-160-WLI IGRP 0.98 27 IGRP-152-160-WLI 165 4041 1 HomoSapiens IGRP FLWSVFWLI Naive T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*02:01 B2M MHCI -11917 chip0514_227352 -0.88 10.03 Chip3 T1D_7 T1D TGTCCAATGAGTAGATCTAACTTTGGAAATGAGAAATTCACCTTT CPMSRSNFGNEKFTF TRAV12-3*01 TRAJ48*01 7.0 164.0 TGTGCCAGCAGCCCCAAGGATGAGGGGATGAACACTGAAGCTTTCTTT CASSPKDEGMNTEAFF TRBV3-1*01 TRBJ1-1*01 49.0 2282.0 CPMSRSNFGNEKFTF_CASSPKDEGMNTEAFF 1 8476 PGT-178 PGT 0.78 1480 PGT-178 179 8297 3 HomoSapiens PGT LLAGIGTVPI Naive T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*02:01 B2M MHCI -11918 chip0514_807170 -4.02 7.58 Chip3 T1D_7 T1D TGTGCAATGAGCTTTTCTAACTTTGGAAATGAGAAATTAACCTTT CAMSFSNFGNEKLTF TRAV12-3*01 TRAJ48*01 39.0 1287.0 TGTGCCAGCAGCCAAGGAGCGACTAGCGGGGTCCAAGAGACCCAGTACTTC CASSQGATSGVQETQYF TRBV14*01 TRBJ2-5*01 2.0 130.0 CAMSFSNFGNEKLTF_CASSQGATSGVQETQYF 1 8231 PGT-178 PGT 0.93 1480 PGT-178 179 8052 2 HomoSapiens PGT LLAGIGTVPI Naive T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*02:01 B2M MHCI -11919 chip0514_262993 -2.24 7.38 Chip3 T1D_8 T1D TGTGCCAGCAGCTTAGACTCGGACTACGGAAACACCATATATTTT CASSLDSDYGNTIYF TRBV7-6*01 TRBJ1-3*01 8.0 198.0 _CASSLDSDYGNTIYF 1 6253 GP160-311-320 HIV 0.92 109 GP160-311-320 166 6087 3 HIV-1 GP160 RGPGRAFVTI Naive T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*02:01 B2M MHCI -11920 chip0514_714161 -4.35 7.61 Chip3 T1D_7 T1D TGTGCTGCGACCGGCACTGCCAGTAAACTCACCTTT CAATGTASKLTF TRAV8-6*01 TRAJ44*01 14.0 871.0 TGTGCCAGCAGCTTAAACGAGCAGTTCTTC CASSLNEQFF TRBV7-9*01 TRBJ2-1*01 20.0 850.0 CAATGTASKLTF_CASSLNEQFF 1 7592 PGT-178 PGT 0.93 1480 NEG 153 7439 2 HomoSapiens PGT LLAGIGTVPI Naive T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*02:01 B2M MHCI -11921 chip0514_116206 8.79 9.18 Chip3 T1D_7 T1D TGTGCCGTGAAAGACACCGACAAGCTCATCTTT CAVKDTDKLIF TRAV8-1*01 TRAJ34*01 1.0 123.0 TGTGCCACCAGTGGCTGGCAGGGTTCGGAAGAGACCCAGTACTTC CATSGWQGSEETQYF TRBV24-1*01 TRBJ2-5*01 12.0 593.0 CAVKDTDKLIF_CATSGWQGSEETQYF 1 6372 EBV-BRLF1 EBV 0.93 1264 EBV-BRLF1 194 6178 8 EBV BRLF1 YVLDHLIVV effector memory T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*02:01 B2M MHCI -11922 chip0514_344264 9.47 13.08 Chip3 T1D_8 T1D TGTGTGGGTACAAGGTCAGGAGGAAGCTACATACCTACATTT CVGTRSGGSYIPTF TRAV12-1*01 TRAJ6*01 85.0 3539.0 CVGTRSGGSYIPTF_ 3 3477 EBV-LMP1-2 EBV 1.0 41 EBV-LMP1-2 160 3317 6 EBV LMP1 YLQQNWWTL central memory T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*02:01 B2M MHCI -11923 chip0514_461321 -3.56 8.54 Chip3 T1D_7 T1D TGTGCCGTGAACGGGTATGGTACTGGAGGCTTCAAAAGACTATCT CAVNGYGTGGFKRLS TRAV12-2*01 TRAJ9*01 36.0 906.0 CAVNGYGTGGFKRLS_ 1 6853 HCV-35-44 HCV 0.56 13 NEG 195 6658 2 HCV POL YLLPRRGPRL Naive T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*02:01 B2M MHCI -11924 chip0514_451717 11.04 8.26 Chip3 T1D_7 T1D TGTGCTCCGGCCGGTTCTTCCGGATACAGCACCCTCACCTTT CAPAGSSGYSTLTF TRAV17*01 TRAJ11*01 1.0 25.0 TGTGCCAGCAGTTACCAAGGTTCGGGATCCTATGGCTACACCTTC CASSYQGSGSYGYTF TRBV6-5*01 TRBJ1-2*01 10.0 328.0 CAPAGSSGYSTLTF_CASSYQGSGSYGYTF 1 7919 EBV-LMP2-FLY EBV 0.73 355 NEG 178 7741 10 EBV LMP2 FLYALALLL effector memory T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*02:01 B2M MHCI -11925 chip0514_705791 8.71 9.15 Chip3 T1D_7 T1D TGCGCCAGCAGTGAGAACGGGATGAACACTGAAGCTTTCTTT CASSENGMNTEAFF TRBV10-2*01 TRBJ1-1*01 26.0 621.0 _CASSENGMNTEAFF 1 8001 EBV-LMP2A EBV 0.92 700 EBV-LMP2A 183 7818 8 EBV LMP2A CLGGLLTMV effector memory T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*02:01 B2M MHCI -11926 chip0514_184990 -1.13 6.81 Chip3 T1D_7 T1D TGCAGTGCTAGAGACCCTACTAGAGCGGACGGATACAATGAGCAGTTCTTC CSARDPTRADGYNEQFF TRBV20-1*01 TRBJ2-1*01 42.0 3049.0 _CSARDPTRADGYNEQFF 1 6337 IGRP-152-160-WLI IGRP 0.86 27 NEG 148 6189 3 HomoSapiens IGRP FLWSVFWLI Naive T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*02:01 B2M MHCI -11927 chip0514_91054 -2.34 12.5 Chip3 T1D_7 T1D TGCGGCACAGACCCCCTCGACTACAAGCTCAGCTTT CGTDPLDYKLSF TRAV30*01 TRAJ20*01 16.0 1307.0 CGTDPLDYKLSF_ 1 4595 CVB3-P3A CVB 0.7 77 NEG 168 4427 4 CoxsackievirusB P3A GIIYIIYKL Naive T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*02:01 B2M MHCI -11928 chip0514_543074 -4.01 7.84 Chip3 T1D_7 T1D TGTGCAATGAGAGAGGTCTTCGGACTAATCAAAGCTGCAGGCAACAAGCTAACTTTT CAMREVFGLIKAAGNKLTF TRAV14/DV4*01 TRAJ17*01 19.0 566.0 TGTGCCAGCAGTCAGACAGAAATCTCCTACGAGCAGTACTTC CASSQTEISYEQYF TRBV12-3*01,TRBV12-4*01 TRBJ2-7*01 26.0 1092.0 CAMREVFGLIKAAGNKLTF_CASSQTEISYEQYF 1 6237 MART1-A28L MART1 0.81 84 MART1-A28L 174 6063 2 HomoSapiens MART1 ALGIGILTV Naive T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*02:01 B2M MHCI -11929 chip0514_676841 9.19 8.16 Chip3 T1D_7 T1D _ 6746 7701 EBV-LMP2-FLY EBV 0.92 355 EBV-LMP2-FLY 190 7511 8 EBV LMP2 FLYALALLL effector memory T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*02:01 B2M MHCI -11930 chip0514_437576 7.21 13.32 Chip3 T1D_7 T1D TGTGCAGGGAATTATGGAGGAAGCCAAGGAAATCTCATCTTT CAGNYGGSQGNLIF TRAV25*01 TRAJ42*01 6.0 333.0 TGTGCCAGTAGTATTAGGTCCACCGGGGAGCTGTTTTTT CASSIRSTGELFF TRBV19*01 TRBJ2-2*01 11.0 851.0 CAGNYGGSQGNLIF_CASSIRSTGELFF 1 4824 M1 FLU 0.96 1250 M1 167 4657 7 InfluenzaA M1 GILGFVFTL transitional T cells between effector and memory populations PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*02:01 B2M MHCI -11931 chip0514_178748 -3.1 8.04 Chip3 T1D_7 T1D TGTGCCGCCCAGCCCTATGATAACTATGGTCAGAATTTTGTCTCT CAAQPYDNYGQNFVS TRAV20*01 TRAJ26*01 8.0 364.0 TGTGCCAGCAGCTTAGCACAATCGTATGAGCAGTTCTTC CASSLAQSYEQFF TRBV7-9*01 TRBJ2-1*01 1.0 10.0 CAAQPYDNYGQNFVS_CASSLAQSYEQFF 1 8095 GP160-311-320 HIV 0.78 109 NEG 180 7915 2 HIV-1 GP160 RGPGRAFVTI Naive T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*02:01 B2M MHCI -11932 chip0514_643165 14.78 10.83 Chip3 T1D_8 T1D TGTGCCGTGAAAGACACCGACAAGCTCATCTTT CAVKDTDKLIF TRAV8-1*01 TRAJ34*01 1.0 51.0 CAVKDTDKLIF_ 56 3769 EBV-BRLF1 EBV 0.96 1264 EBV-BRLF1 169 3600 12 EBV BRLF1 YVLDHLIVV effector T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*02:01 B2M MHCI -11933 chip0514_99988 -4.28 10.07 Chip3 T1D_7 T1D TGTGCTTATAGGAGCGGCTGGAATAACAATGACATGCGCTTT CAYRSGWNNNDMRF TRAV38-2/DV8*01 TRAJ43*01 2.0 67.0 TGTGCCAGCAGCCTCCAGGGGAAAGAGACCCAGTACTTC CASSLQGKETQYF TRBV28*01 TRBJ2-5*01 21.0 1276.0 CAYRSGWNNNDMRF_CASSLQGKETQYF 1 6618 HCVNS4B-1807-1816 HCV 0.89 74 HCVNS4B-1807-1816 163 6455 2 HCV NS4B LLFNILGGWV Naive T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*02:01 B2M MHCI -11934 chip0514_13543 13.73 7.45 Chip3 T1D_7 T1D TGTGCCGTGCGTTCAGGATACAGCACCCTCACCTTT CAVRSGYSTLTF TRAV8-1*01 TRAJ11*01 14.0 1248.0 TGTGCCAGCAGTTCCCTATCGGGAAGCGGTCGGCCCCAGCATTTT CASSSLSGSGRPQHF TRBV28*01 TRBJ1-5*01 15.0 673.0 CAVRSGYSTLTF_CASSSLSGSGRPQHF 1 4641 EBV-BRLF1 EBV 0.88 1264 EBV-BRLF1 173 4468 10 EBV BRLF1 YVLDHLIVV effector memory T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*02:01 B2M MHCI -11935 chip0514_81684 -4.64 9.64 Chip3 T1D_7 T1D TGTGCCAGCAGCCCGCGACAGGGTGAAAGGTACAATGAGCAGTTCTTC CASSPRQGERYNEQFF TRBV7-9*01 TRBJ2-1*01 18.0 712.0 _CASSPRQGERYNEQFF 1 5269 PPI-29-38 INS 1.0 6 PPI-29-38 156 5113 2 HomoSapiens PPI HLCGSHLVEA Naive T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*02:01 B2M MHCI -11936 chip0514_464666 12.48 13.26 Chip3 T1D_8 T1D TGTGCCCTGAAAAACACCCACAACCACATTTAT CALKNTHNHIY TRAV8-1*01 TRAJ34*01 2.0 59.0 TGTGCCGTGACAGTTACCGCCTAGCTCCTCTTT CAVTVTA*LLF TRAV8-1*01 TRAJ34*01 2.0 5.0 0.5 TGTGCCAGCGGGGAACTTATCAATGAGCAGTTCTTC CASGELINEQFF TRBV3-1*01 TRBJ2-1*01 47.0 3024.0 CALKNTHNHIY_CASGELINEQFF 1 1894 EBV-BRLF1 EBV 0.97 1264 EBV-BRLF1 164 1730 11 EBV BRLF1 YVLDHLIVV effector T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*02:01 B2M MHCI -11937 chip0514_554602 5.11 9.63 Chip3 T1D_7 T1D TGTGCTACGGAGGGTGGAGAAGGATACAGCACCCTCACCTTT CATEGGEGYSTLTF TRAV17*01 TRAJ11*01 15.0 717.0 TGTGCCAGCAGTTCTCAAGGGGGGGGCGATGGCTACACCTTC CASSSQGGGDGYTF TRBV6-5*01 TRBJ1-2*01 60.0 2985.0 CATEGGEGYSTLTF_CASSSQGGGDGYTF 1 5446 EBV-LMP2-FLY EBV 0.88 355 EBV-LMP2-FLY 174 5272 6 EBV LMP2 FLYALALLL central memory T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*02:01 B2M MHCI -11938 chip0514_780645 -1.96 7.85 Chip3 T1D_7 T1D TGTGCAATGACCCTTTCTAACTTTGGAAATGAGAAATTAACCTTT CAMTLSNFGNEKLTF TRAV12-3*01 TRAJ48*01 40.0 1669.0 TGTTCCAGTTGTGGGGGCTCCGGGTACACGCCTGGGGCCAACGTCCTGACTGTC CSSCGGSGYTPGANVLTV TRBV19*01 TRBJ2-6*01 2.0 164.0 CAMTLSNFGNEKLTF_CSSCGGSGYTPGANVLTV 1 6716 PGT-178 PGT 0.74 1480 PGT-178 183 6533 3 HomoSapiens PGT LLAGIGTVPI Naive T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*02:01 B2M MHCI -11939 chip0514_10317 10.96 8.1 Chip3 T1D_7 T1D TGTGCCAGCAGCCCGAGGACAGTAAATGAGCAGTTCTTC CASSPRTVNEQFF TRBV11-3*01 TRBJ2-1*01 1.0 78.0 _CASSPRTVNEQFF 1 5913 GP160-311-320 HIV 0.76 109 NEG 183 5730 10 HIV-1 GP160 RGPGRAFVTI effector memory T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*02:01 B2M MHCI -11940 chip0514_256416 13.18 13.74 Chip3 T1D_8 T1D _ 6746 1042 EBV-BLMF1 EBV 1.0 2531 EBV-BLMF1 159 883 11 EBV BLMF1 GLCTLVAML effector T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*02:01 B2M MHCI -11941 chip0514_85661 10.94 6.63 Chip3 T1D_7 T1D TGCGCCCGCCGTGAGGACGGGTTGAACACTGAAGCTTTCTTT CARREDGLNTEAFF TRBV10-2*01 TRBJ1-1*01 5.0 134.0 _CARREDGLNTEAFF 1 8086 EBV-LMP2A EBV 0.92 700 EBV-LMP2A 222 7864 10 EBV LMP2A CLGGLLTMV effector memory T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*02:01 B2M MHCI -11942 chip0514_161442 -4.0 9.52 Chip3 T1D_7 T1D TGTGCCAGCTGCTTAGTTTCTGAAGCTTTCTTT CASCLVSEAFF TRBV7-9*01 TRBJ1-1*01 20.0 936.0 _CASCLVSEAFF 1 6734 ZNT8-145-153 ZNT8 0.58 14 ZNT8-145-153 182 6552 2 HomoSapiens ZNT8 LLSILCIWV Naive T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*02:01 B2M MHCI -11943 chip0514_700334 -2.98 12.29 Chip3 T1D_7 T1D TGTGCCAGCAGCTCGACTGCGACTAATGAAAAACTGTTTTTT CASSSTATNEKLFF TRAV38-1*01 TRAJ5*01 2.0 124.0 TGTGCCAGCAGCTCGACTGCGACTAATGAAAAACTGTTTTTT CASSSTATNEKLFF TRBV7-9*01 TRBJ1-4*01 18.0 618.0 CASSSTATNEKLFF_CASSSTATNEKLFF 1 5193 HCVNS3-1073-1081 HCV 0.93 36 NEG 191 5002 1 HCV NS3 CINGVCWTV Naive T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*02:01 B2M MHCI -11944 chip0514_852139 -3.33 11.09 Chip3 T1D_7 T1D TGCATCCTTATCTCGATTTATAACCAGGGAGGAAAGCTTATCTTC CILISIYNQGGKLIF TRAV26-2*01 TRAJ23*01 11.0 275.0 TGCAGTGCTAGAGATTGGGGGTCCTCTGGGGCCAACGTCCTGACTTTC CSARDWGSSGANVLTF TRBV20-1*01 TRBJ2-6*01 7.0 430.0 CILISIYNQGGKLIF_CSARDWGSSGANVLTF 1 5360 MART1-ALA MART1 0.88 269 MART1-ALA 179 5181 4 HomoSapiens MART1 ALAGIGILTV Naive T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*02:01 B2M MHCI -11945 chip0514_495814 -1.98 10.44 Chip3 T1D_7 T1D _ 6746 6892 DUF5119-124-133 DUF5119 0.4 7 NEG 178 6714 3 HomoSapiens DUF5119 MVWGPDPLYV Naive T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*02:01 B2M MHCI -11946 chip0514_265825 -4.27 8.82 Chip3 T1D_7 T1D TGTGCCAGTACCAACCAGGGCAGGGGGGACACTGAAGCTTTCTTT CASTNQGRGDTEAFF TRBV19*01 TRBJ1-1*01 24.0 546.0 _CASTNQGRGDTEAFF 1 6821 PREINS-2-10 INS 0.58 37 NEG 147 6674 2 HomoSapiens PREINS ALWMRLLPL Naive T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*02:01 B2M MHCI -11947 chip0514_684954 -2.84 9.35 Chip3 T1D_7 T1D TGTGCAATGGCTAAATCTAACTTTGGAAATGAGAAATTAACCTTT CAMAKSNFGNEKLTF TRAV12-3*01 TRAJ48*01 35.0 1219.0 TGCAGTGCTAGTGGGGTAGACTACAATGAGCAGTTCTTC CSASGVDYNEQFF TRBV20-1*01 TRBJ2-1*01 12.0 658.0 CAMAKSNFGNEKLTF_CSASGVDYNEQFF 1 6568 PGT-178 PGT 0.96 1480 PGT-178 147 6421 2 HomoSapiens PGT LLAGIGTVPI Naive T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*02:01 B2M MHCI -11948 chip0514_113562 11.3 6.6 Chip3 T1D_7 T1D TGTGCCAGCAGCCGACAGGGGGACGGGATGGATGGCTACACCTTC CASSRQGDGMDGYTF TRBV6-1*01 TRBJ1-2*01 11.0 469.0 _CASSRQGDGMDGYTF 1 7213 EBV-LMP2-FLY EBV 0.53 355 NEG 166 7047 10 EBV LMP2 FLYALALLL effector memory T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*02:01 B2M MHCI -11949 chip0514_437848 -3.62 9.33 Chip3 T1D_8 T1D TGTGCAATGAAAGAGGTCAACCTTGGAAATGAGAAATTAACCTTT CAMKEVNLGNEKLTF TRAV14/DV4*01 TRAJ48*01 60.0 1964.0 CAMKEVNLGNEKLTF_ 1 5084 PGT-178 PGT 0.92 1480 PGT-178 171 4913 2 HomoSapiens PGT LLAGIGTVPI Naive T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*02:01 B2M MHCI -11950 chip0514_681552 8.64 10.44 Chip3 T1D_7 T1D CGTGCTGTGACACCAAACGCCAGACTCATGTTT RAVTPNARLMF TRAV3*01 TRAJ31*01 16.0 1628.0 TGTGCCAGCAGTTTATCGGTTAGCGAATTCTACAATGAGCAGTTCTTC CASSLSVSEFYNEQFF TRBV27*01 TRBJ2-1*01 63.0 3496.0 RAVTPNARLMF_CASSLSVSEFYNEQFF 1 7792 EBV-BRLF1 EBV 0.83 1264 EBV-BRLF1 190 7602 8 EBV BRLF1 YVLDHLIVV effector memory T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*02:01 B2M MHCI -11951 chip0514_384161 -0.75 7.5 Chip3 T1D_7 T1D _ 6746 6319 PGT-178 PGT 0.53 1480 NEG 169 6150 3 HomoSapiens PGT LLAGIGTVPI Naive T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*02:01 B2M MHCI -11952 chip0514_218182 -0.09 8.62 Chip3 T1D_7 T1D _ 6746 9351 CVB3-P3A CVB 0.86 77 CVB3-P3A 149 9202 4 CoxsackievirusB P3A GIIYIIYKL Naive T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*02:01 B2M MHCI -11953 chip0514_295303 -3.63 9.2 Chip3 T1D_7 T1D TGTGCTGTCCCGAATACTGGAGCCAATAGTAAGCTGACATTT CAVPNTGANSKLTF TRAV21*01 TRAJ56*01 1.0 16.0 TGTGCCAGCAGCTTAGCAGACAGCTACGAGCAGTACTTC CASSLADSYEQYF TRBV11-1*01 TRBJ2-7*01 12.0 862.0 CAVPNTGANSKLTF_CASSLADSYEQYF 1 6573 POL-132-140 HIV 0.77 37 POL-132-140 164 6409 2 HIV-1 POL LVGPTPVNI Naive T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*02:01 B2M MHCI -11954 chip0514_335297 -2.72 9.93 Chip3 T1D_7 T1D TGTGCCTCAGATGGCCAGAAGCTGCTCTTT CASDGQKLLF TRAV12-2*01 TRAJ16*01 2.0 134.0 CASDGQKLLF_ 1 4882 PGT-178 PGT 0.59 1480 PGT-178 166 4716 4 HomoSapiens PGT LLAGIGTVPI Naive T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*02:01 B2M MHCI -11955 chip0514_586123 -0.87 7.97 Chip3 T1D_8 T1D TGTGCTGTGAGTGATCCCTCCAGCACTGCCAGTAAACTCACCTTT CAVSDPSSTASKLTF TRAV8-4*01 TRAJ44*01 29.0 1437.0 CAVSDPSSTASKLTF_ 1 6508 ZNT8-314-322 ZNT8 0.81 16 NEG 188 6320 3 HomoSapiens ZNT8 ILSAHVATA Naive T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*02:01 B2M MHCI -11956 chip0514_203776 -3.16 13.94 Chip3 T1D_8 T1D TGTGCTCCGGACTCAGGATACAGCACCCTCACCTTT CAPDSGYSTLTF TRAV17*01 TRAJ11*01 2.0 64.0 TGTGCCAGCAGTCACCGGGGGATAGATACGCAGTATTTT CASSHRGIDTQYF TRBV28*01 TRBJ2-3*01 46.0 2727.0 CAPDSGYSTLTF_CASSHRGIDTQYF 1 4117 ZNT8-115-123 ZNT8 0.73 74 NEG 150 3967 1 HomoSapiens ZNT8 LLSLFSLWL Naive T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*02:01 B2M MHCI -11957 chip0514_11781 -1.95 7.67 Chip3 T1D_7 T1D TGTGCCAGCAGTATCTGGACTAACGGGGGGCGGGATACGCAGTATTTT CASSIWTNGGRDTQYF TRBV27*01 TRBJ2-3*01 16.0 837.0 _CASSIWTNGGRDTQYF 1 5639 MART1-ALA MART1 0.93 269 NEG 161 5478 4 HomoSapiens MART1 ALAGIGILTV Naive T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*02:01 B2M MHCI -11958 chip0514_499201 -3.5 12.74 Chip3 T1D_7 T1D TGTGCCGTGACAAAGGGAGGAGGAAACAAACTCACCTTT CAVTKGGGNKLTF TRAV12-2*01 TRAJ10*01 24.0 1019.0 TGCAGCGTTGGGGGGGGACTAGCGGGAACCTTCTACAATGAGCAGTTCTTC CSVGGGLAGTFYNEQFF TRBV29-1*01 TRBJ2-1*01 175.0 8305.0 CAVTKGGGNKLTF_CSVGGGLAGTFYNEQFF 1 5740 PGT-178 PGT 0.82 1480 NEG 173 5567 1 HomoSapiens PGT LLAGIGTVPI Naive T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*02:01 B2M MHCI -11959 chip0514_478707 -2.19 9.48 Chip3 T1D_7 T1D TGTGCACCGTCCATATCTAACTTTGGAAATGAGAAATTAACCTTT CAPSISNFGNEKLTF TRAV12-3*01 TRAJ48*01 1.0 29.0 CAPSISNFGNEKLTF_ 1 7164 PGT-178 PGT 0.84 1480 PGT-178 177 6987 3 HomoSapiens PGT LLAGIGTVPI Naive T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*02:01 B2M MHCI -11960 chip0514_205188 -0.88 8.82 Chip3 T1D_8 T1D TGTGCAATGAGTTCTTTATACAACTTCAACAAATTTTACTTT CAMSSLYNFNKFYF TRAV14/DV4*01 TRAJ21*01 13.0 599.0 TGTGCAATGAGTTTTTTATACAACTTCAACAATTTTACTTT CAMSFLta?QLQQFYF TRAV14/DV4*01 TRAJ21*01 22.0 1482.0 0.56 TGTGCCAGCAGCCAAGATACCCCGACCGCCAGACCCTACGAGCAGTACTTC CASSQDTPTARPYEQYF TRBV14*01 TRBJ2-7*01 14.0 544.0 CAMSSLYNFNKFYF_CASSQDTPTARPYEQYF 1 4840 GAD65-114-122 GAD65 1.0 63 GAD65-114-122 170 4670 4 HomoSapiens GAD65 VMNILLQYV Naive T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*02:01 B2M MHCI -11961 chip0514_450173 -2.55 9.84 Chip3 T1D_7 T1D TGTGCTCTCGCGCCCATTGGATAAGTGTGGGCGGAATTTTGTCTTT CALAPIGta??agCGRNFVF TRAV19*01 TRAJ26*01 7.0 443.0 CALAPIGta??agCGRNFVF_ 1 6789 ZNT8-16-24 ZNT8 0.87 39 ZNT8-16-24 168 6621 3 HomoSapiens ZNT8 KMYAFTLES Naive T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*02:01 B2M MHCI -11962 chip0514_812397 11.57 8.66 Chip3 T1D_7 T1D TGTGCCAGCAGTTCCCTATCGGGAAGCGGTCAGCCCCAGCATTTT CASSSLSGSGQPQHF TRBV28*01 TRBJ1-5*01 14.0 632.0 _CASSSLSGSGQPQHF 23 4439 EBV-BRLF1 EBV 0.91 1264 EBV-BRLF1 165 4274 10 EBV BRLF1 YVLDHLIVV effector memory T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*02:01 B2M MHCI -11963 chip0514_499263 -2.77 8.63 Chip3 T1D_7 T1D TGTGCCAGCACCGCAACAGGGGTTACCTACAATGAGCAGTTCTTC CASTATGVTYNEQFF TRBV6-1*01 TRBJ2-1*01 11.0 327.0 _CASTATGVTYNEQFF 1 8035 MART1-ALA MART1 0.6 269 NEG 162 7873 2 HomoSapiens MART1 ALAGIGILTV Naive T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*02:01 B2M MHCI -11964 chip0514_750739 13.44 6.93 Chip3 T1D_7 T1D TGTGCTCTTAGCAACACAGGCAAACTAATCTTT CALSNTGKLIF TRAV8-1*01 TRAJ37*01 29.0 1938.0 TGTGCCAGCAGCCAAGGAGGTAGCGGGAGTTCAGATACGCAGTATTTT CASSQGGSGSSDTQYF TRBV4-2*01 TRBJ2-3*01 27.0 1037.0 CALSNTGKLIF_CASSQGGSGSSDTQYF 1 4962 EBV-BRLF1 EBV 0.93 1264 EBV-BRLF1 212 4750 10 EBV BRLF1 YVLDHLIVV effector memory T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*02:01 B2M MHCI -11965 chip0514_749689 -0.92 8.82 Chip3 T1D_8 T1D CGCAGTGCGAGCTCCGGGACTAGTGGTAGCGAGCAGTACTTC RSASSGTSGSEQYF TRBV20-1*01 TRBJ2-7*01 36.0 2384.0 _RSASSGTSGSEQYF 1 5189 IGRP-215-223 IGRP 0.91 5 IGRP-215-223 164 5025 4 HomoSapiens IGRP FLFAVGFYL Naive T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*02:01 B2M MHCI -11966 chip0514_19992 5.91 12.6 Chip3 T1D_8 T1D TGTGCTGGGGCGGGGGGGCCGGGAAATCTCATCTTT CAGAGGPGNLIF TRAV27*01 TRAJ42*01 12.0 634.0 TGTGCCAGTAGTATTCGGAGCTCCTACGAGCAATACTTC CASSIRSSYEQYF TRBV19*01 TRBJ2-7*01 6.0 364.0 CAGAGGPGNLIF_CASSIRSSYEQYF 1 5455 M1 FLU 0.96 1250 M1 187 5268 7 InfluenzaA M1 GILGFVFTL transitional T cells between effector and memory populations PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*02:01 B2M MHCI -11967 chip0514_667240 -1.24 7.35 Chip3 T1D_7 T1D TGTGCTCTAGGAGATGACAAGATCATCTTT CALGDDKIIF TRAV16*01 TRAJ30*01 2.0 133.0 TGTGCCAGCAGCCCCCGAGCGGGACTAGCGGTGAATGAGCAGTTCTTC CASSPRAGLAVNEQFF TRBV7-9*01 TRBJ2-1*01 3.0 116.0 CALGDDKIIF_CASSPRAGLAVNEQFF 1 7405 PPI-29-38 INS 0.93 6 PPI-29-38 171 7234 3 HomoSapiens PPI HLCGSHLVEA Naive T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*02:01 B2M MHCI -11968 chip0514_241787 -1.72 7.43 Chip3 T1D_7 T1D TGTGCCAGCAGTCGCCCGCCTCTAGAAGTAGAGACCCAGTACTTC CASSRPPLEVETQYF TRBV6-1*01 TRBJ2-5*01 1.0 15.0 _CASSRPPLEVETQYF 1 6740 PGT-178 PGT 0.64 1480 PGT-178 167 6573 3 HomoSapiens PGT LLAGIGTVPI Naive T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*02:01 B2M MHCI -11969 chip0514_30473 -4.62 9.22 Chip3 T1D_8 T1D TGTGCCGTGGAAGGAAGCTACATACCTACATTT CAVEGSYIPTF TRAV12-2*01 TRAJ6*01 32.0 2842.0 TGTGCCAGCTCGGGGGCAGGGAGTCCGTACACCTTC CASSGAGSPYTF TRBV6-2*01,TRBV6-3*01 TRBJ1-2*01 1.0 87.0 CAVEGSYIPTF_CASSGAGSPYTF 1 5113 ZNT8-115-123 ZNT8 0.48 74 ZNT8-115-123 147 4966 2 HomoSapiens ZNT8 LLSLFSLWL Naive T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*02:01 B2M MHCI -11970 chip0514_697661 15.57 12.59 Chip3 T1D_7 T1D TGTGCAATGAGAGATGAAGACTACAAGCTCAGCTTT CAMRDEDYKLSF TRAV14/DV4*01 TRAJ20*01 73.0 4859.0 TGCGCCAGCAGTGAATCCGGCAGGGGACAATCGGAGACCCAGTACTTC CASSESGRGQSETQYF TRBV10-1*01 TRBJ2-5*01 21.0 727.0 CAMRDEDYKLSF_CASSESGRGQSETQYF 2 1494 GP160-311-320 HIV 0.53 109 NEG 180 1314 12 HIV-1 GP160 RGPGRAFVTI effector T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*02:01 B2M MHCI -11971 chip0514_93947 15.89 10.69 Chip3 T1D_8 T1D TGTGCAGAGAGTAGCGGGGCCTCCGGCAAACTAATCTTT CAESSGASGKLIF TRAV5*01 TRAJ37*01 10.0 780.0 TGCAGCGTGGGGACAGGGGGCACTAATGAAAAACTGTTTTTT CSVGTGGTNEKLFF TRBV29-1*01 TRBJ1-4*01 8.0 291.0 CAESSGASGKLIF_CSVGTGGTNEKLFF 7 2846 EBV-BLMF1 EBV 0.86 2531 NEG 205 2641 12 EBV BLMF1 GLCTLVAML effector T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*02:01 B2M MHCI -11972 chip0514_260168 -2.13 10.33 Chip3 T1D_7 T1D TGTGCAATGAGTTTATCTAACTTTGGAAATGAGAAATTAACCTTT CAMSLSNFGNEKLTF TRAV12-3*01 TRAJ48*01 22.0 587.0 CAMSLSNFGNEKLTF_ 16 5893 PGT-178 PGT 0.91 1480 PGT-178 186 5707 3 HomoSapiens PGT LLAGIGTVPI Naive T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*02:01 B2M MHCI -11973 chip0514_822736 14.9 9.07 Chip3 T1D_7 T1D TGTGCCAGCAGTTCCTTTCACATACAGGGGGGCTACGAGCAGTACTTC CASSSFHIQGGYEQYF TRBV28*01 TRBJ2-7*01 19.0 862.0 _CASSSFHIQGGYEQYF 5 3599 IGRP-265-273 IGRP 0.73 34 NEG 161 3438 12 HomoSapiens IGRP VLFGLGFAI effector T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*02:01 B2M MHCI -11974 chip0514_785716 0.35 8.62 Chip3 T1D_7 T1D TGTGCTACCACCGGGGGTTCCGGATACAGCACCCTCACCTTT CATTGGSGYSTLTF TRAV17*01 TRAJ11*01 1.0 11.0 TGTGCCAGCAGCTATCGACTAGGAGGAAATACGCAGTATTTT CASSYRLGGNTQYF TRBV5-6*01 TRBJ2-3*01 46.0 1509.0 CATTGGSGYSTLTF_CASSYRLGGNTQYF 1 7538 PGT-178 PGT 0.45 1480 PGT-178 172 7366 4 HomoSapiens PGT LLAGIGTVPI Naive T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*02:01 B2M MHCI -11975 chip0514_161913 12.45 13.56 Chip3 T1D_7 T1D _ 6746 1783 EBV-BLMF1 EBV 1.0 2531 NEG 185 1598 11 EBV BLMF1 GLCTLVAML effector T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*02:01 B2M MHCI -11976 chip0514_568261 9.26 10.81 Chip3 T1D_7 T1D _ 6746 5801 EBV-BRLF1 EBV 1.0 1264 EBV-BRLF1 162 5639 8 EBV BRLF1 YVLDHLIVV effector memory T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*02:01 B2M MHCI -11977 chip0514_395148 7.25 14.02 Chip3 T1D_8 T1D _ 6746 3755 M1 FLU 0.96 1250 M1 163 3592 7 InfluenzaA M1 GILGFVFTL transitional T cells between effector and memory populations PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*02:01 B2M MHCI -11978 chip0514_225320 11.89 9.93 Chip3 T1D_7 T1D TGTGCTGTGGAGGATCAGGGACACAACTTCAACAAATTTTACTTT CAVEDQGHNFNKFYF TRAV2*01 TRAJ21*01 49.0 1384.0 TGTGCCAGCAGCTCCCAGTTCGGCGGGAAAGAGACCCAGTACTTC CASSSQFGGKETQYF TRBV7-8*01 TRBJ2-5*01 4.0 57.0 CAVEDQGHNFNKFYF_CASSSQFGGKETQYF 2 5017 PREINS-6-14 INS 0.69 20 NEG 176 4841 9 HomoSapiens PREINS RLLPLLALL effector memory T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*02:01 B2M MHCI -11979 chip0514_251871 -4.77 9.15 Chip3 T1D_7 T1D TGCGCCAGCAGTCAATTCAAAGACTAGCGGGAATACAGATACGCAGTATTTT CASSQFKDta??gcGNTDTQYF TRBV4-3*01 TRBJ2-3*01 92.0 3679.0 _CASSQFKDta??gcGNTDTQYF 1 8125 GAG-433-442 HIV 0.92 19 GAG-433-442 172 7953 2 HIV-1 GAG FLGKIWPSYK Naive T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*02:01 B2M MHCI -11980 chip0514_775467 9.59 8.62 Chip3 T1D_7 T1D TGTGCTGTCCTCCTGGATAGCAACTATCAGTTAATCTGG CAVLLDSNYQLIW TRAV21*01 TRAJ33*01 48.0 3838.0 TGCGCCAGCAGTGAGGACGGGATGAACACTGAAGCTTTCTTT CASSEDGMNTEAFF TRBV10-2*01 TRBJ1-1*01 44.0 2178.0 CAVLLDSNYQLIW_CASSEDGMNTEAFF 4 5922 EBV-LMP2A EBV 0.95 700 EBV-LMP2A 181 5741 8 EBV LMP2A CLGGLLTMV effector memory T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*02:01 B2M MHCI -11981 chip0514_352864 -2.99 11.08 Chip3 T1D_7 T1D TGTGCCAGCAGCTTGGGCCTGGACACTAACCAACAAGAGACCCAGTACTTC CASSLGLDTNQQETQYF TRBV5-6*01 TRBJ2-5*01 10.0 660.0 _CASSLGLDTNQQETQYF 1 6577 PGT-178 PGT 0.49 1480 PGT-178 169 6408 4 HomoSapiens PGT LLAGIGTVPI Naive T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*02:01 B2M MHCI -11982 chip0514_361394 9.66 9.52 Chip3 T1D_7 T1D TGTGCCGTGAAGGACACCGACAAGCTCATCTTT CAVKDTDKLIF TRAV8-1*01 TRAJ34*01 12.0 778.0 TGCAGTGCTACAGACAGTACCTACAATGAGCAGTTCTTC CSATDSTYNEQFF TRBV20-1*01 TRBJ2-1*01 26.0 1630.0 CAVKDTDKLIF_CSATDSTYNEQFF 8 6142 EBV-BRLF1 EBV 0.91 1264 EBV-BRLF1 184 5958 8 EBV BRLF1 YVLDHLIVV effector memory T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*02:01 B2M MHCI -11983 chip0514_238788 12.82 7.16 Chip3 T1D_7 T1D TGTGCCGTGAAGGACACCGACAAGCTCATCTTT CAVKDTDKLIF TRAV8-1*01 TRAJ34*01 14.0 1416.0 CAVKDTDKLIF_ 56 4482 EBV-BRLF1 EBV 0.93 1264 NEG 181 4301 10 EBV BRLF1 YVLDHLIVV effector memory T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*02:01 B2M MHCI -11984 chip0514_133274 0.06 8.27 Chip3 T1D_7 T1D TGTGCAATGGGCGGATCTGAAAGGCTGGTCTTT CAMGGSERLVF TRAV12-3*01 TRAJ57*01 2.0 72.0 TGTGCCAGCAGCGGAAGGGACAGGGGCTTGCCTGAAGCTTTCTTT CASSGRDRGLPEAFF TRAV9-1*01,TRAV29/DV5*01 TRAJ40*01 2.0 7.0 0.5 TGTGCCAGCAGCGGAAGGGACAGGGGCTTGCCTGAAGCTTTCTTT CASSGRDRGLPEAFF TRBV3-1*01 TRBJ1-1*01 34.0 1591.0 CAMGGSERLVF_CASSGRDRGLPEAFF 1 9307 PGT-178 PGT 0.86 1480 PGT-178 160 9147 4 HomoSapiens PGT LLAGIGTVPI Naive T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*02:01 B2M MHCI -11985 chip0514_852485 0.59 5.01 Chip3 T1D_7 T1D TGTGCCAGCAGCCTAGCGGGGGGTTCTTACAATGAGCAGTTCTTC CASSLAGGSYNEQFF TRAV38-1*01 TRAJ50*01 3.0 172.0 TGTGCTGTGGCCCTAACGACTACAAGCTCAGCTTA CAVALac?DYKLSL TRAV8-3*01 TRAJ20*01 3.0 179.0 0.43 TGTGCCAGCAGCCTAGCGGGGGGTTCTTACAATGAGCAGTTCTTC CASSLAGGSYNEQFF TRBV7-9*01 TRBJ2-1*01 29.0 1754.0 CASSLAGGSYNEQFF_CASSLAGGSYNEQFF 1 9538 CVB3-P3A CVB 0.5 77 NEG 145 9393 5 CoxsackievirusB P3A GIIYIIYKL natural killer-like T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*02:01 B2M MHCI -11986 chip0514_58518 -3.31 11.07 Chip3 T1D_7 T1D TGTGTGGTGATCTACACCGACAAGCTCATCTTT CVVIYTDKLIF TRAV12-1*01 TRAJ34*01 13.0 866.0 TGTGCTGGGCAGGAGGAGGTGCTGACGGACTCACCTTT CAGQEEg?tADGLTF TRAV20*01 TRAJ45*01 19.0 1107.0 0.51 TGTGCCAGCAGTGGCCTAGCGGGAGGGCCGGCAGATACGCAGTATTTT CASSGLAGGPADTQYF TRBV2*01 TRBJ2-3*01 26.0 1258.0 CVVIYTDKLIF_CASSGLAGGPADTQYF 1 5921 PREINS-6-14 INS 1.0 20 PREINS-6-14 164 5757 4 HomoSapiens PREINS RLLPLLALL Naive T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*02:01 B2M MHCI -11987 chip0514_445682 11.54 10.24 Chip3 T1D_7 T1D TGTGCCAGCAGTTCCCTATCGGGAAGCGGTCAGCCCCAGCATTTT CASSSLSGSGQPQHF TRBV28*01 TRBJ1-5*01 21.0 618.0 _CASSSLSGSGQPQHF 23 5380 EBV-BRLF1 EBV 0.94 1264 EBV-BRLF1 184 5196 9 EBV BRLF1 YVLDHLIVV effector memory T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*02:01 B2M MHCI -11988 chip0514_630051 -3.43 13.1 Chip3 T1D_7 T1D TGTGCTCTGAGTGATGCGAGCAACACAAGCAAACTAATCTTT CALSDASNTSKLIF TRAV9-2*01 TRAJ37*01 43.0 2002.0 TGTGCCAGCAGCCACGGACTAGCGGGAAATGAGCAGTTCTTC CASSHGLAGNEQFF TRBV7-6*01 TRBJ2-1*01 16.0 754.0 CALSDASNTSKLIF_CASSHGLAGNEQFF 1 4280 PREINS-6-14 INS 0.9 20 PREINS-6-14 167 4113 1 HomoSapiens PREINS RLLPLLALL Naive T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*02:01 B2M MHCI -11989 chip0514_273315 11.59 8.56 Chip3 T1D_8 T1D TGCAGTGCTAGAGACCGGACAGGGAATGGCTACACCTTC CSARDRTGNGYTF TRBV20-1*01 TRBJ1-2*01 25.0 1428.0 _CSARDRTGNGYTF 7 4320 EBV-BLMF1 EBV 0.98 2531 EBV-BLMF1 178 4142 10 EBV BLMF1 GLCTLVAML effector memory T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*02:01 B2M MHCI -11990 chip0514_849478 -0.78 9.63 Chip3 T1D_8 T1D TGTGCCGTGAACCCCCCCGGATCAGGATACAGCACCCTCACCTTT CAVNPPGSGYSTLTF TRAV12-2*01 TRAJ11*01 14.0 661.0 TGCGCCAGCAGCTTGTCGGCTGAAGCTTTCTTT CASSLSAEAFF TRBV5-1*01 TRBJ1-1*01 29.0 1780.0 CAVNPPGSGYSTLTF_CASSLSAEAFF 1 5877 PGT-178 PGT 0.94 1480 PGT-178 156 5721 3 HomoSapiens PGT LLAGIGTVPI Naive T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*02:01 B2M MHCI -11991 chip0514_639427 12.39 10.3 Chip3 T1D_7 T1D _ 6746 6407 EBV-BRLF1 EBV 0.78 1264 EBV-BRLF1 157 6250 9 EBV BRLF1 YVLDHLIVV effector memory T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*02:01 B2M MHCI -11992 chip0514_246464 -2.91 11.0 Chip3 T1D_7 T1D CGTGCTGTGGGGCCTCGGCGGCTGGCGACATGCTCACCTTT RAVGPRcg?AGDMLTF TRAV36/DV7*01 TRAJ39*01 4.0 211.0 TGCAGCGTTGACCGCGGGTTCTCCTACAATGAGCAGTTCTTC CSVDRGFSYNEQFF TRBV29-1*01 TRBJ2-1*01 89.0 6798.0 RAVGPRcg?AGDMLTF_CSVDRGFSYNEQFF 1 5094 EBV-LMP1-2 EBV 0.9 41 EBV-LMP1-2 175 4919 4 EBV LMP1 YLQQNWWTL Naive T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*02:01 B2M MHCI -11993 chip0514_711314 -2.06 8.16 Chip3 T1D_8 T1D TGTGCCAGCCGTGATGGGGGTAACTATGGCTACACCTTC CASRDGGNYGYTF TRBV2*01 TRBJ1-2*01 12.0 562.0 _CASRDGGNYGYTF 1 5350 PTPRN-805-813 PTPRN 0.96 11 PTPRN-805-813 169 5181 3 HomoSapiens PTPRN VIVMLTPLV Naive T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*02:01 B2M MHCI -11994 chip0514_738711 -2.93 8.3 Chip3 T1D_7 T1D TGTGCCGTGAACGGGGACACCGGTAACCAGTTCTATTTT CAVNGDTGNQFYF TRAV12-2*01 TRAJ49*01 18.0 790.0 TGTGCCAGCAGTTACGGACAGGGGTTGGGAAAACTGTTTTTT CASSYGQGLGKLFF TRBV6-2*01,TRBV6-3*01 TRBJ1-4*01 2.0 66.0 CAVNGDTGNQFYF_CASSYGQGLGKLFF 1 9682 M1 FLU 0.8 1250 NEG 182 9500 2 InfluenzaA M1 GILGFVFTL Naive T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*02:01 B2M MHCI -11995 chip0514_388576 -2.28 9.27 Chip3 T1D_7 T1D _ 6746 5703 ZNT8-115-123 ZNT8 0.81 74 ZNT8-115-123 168 5535 3 HomoSapiens ZNT8 LLSLFSLWL Naive T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*02:01 B2M MHCI -11996 chip0514_121895 13.3 10.99 Chip3 T1D_8 T1D TGCAGTGCTAGGGACAGGGGGCTGGGAAACACCATATATTTT CSARDRGLGNTIYF TRBV20-1*01 TRBJ1-3*01 26.0 1347.0 _CSARDRGLGNTIYF 2 3117 EBV-BLMF1 EBV 0.93 2531 EBV-BLMF1 157 2960 9 EBV BLMF1 GLCTLVAML effector memory T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*02:01 B2M MHCI -11997 chip0514_539552 15.38 11.76 Chip3 T1D_7 T1D TGTGCTCTAAGTGCTTGGGGTTCTGGTTCTGCAAGGCAACTGACCTTT CALSAWGSGSARQLTF TRAV16*01 TRAJ22*01 17.0 901.0 CALSAWGSGSARQLTF_ 1 2699 EBV-BRLF1 EBV 0.95 1264 EBV-BRLF1 174 2525 12 EBV BRLF1 YVLDHLIVV effector T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*02:01 B2M MHCI -11998 chip0514_452495 -2.0 10.13 Chip3 T1D_7 T1D TGTGCAATGAGCATATCTAACTTTGGAAATGAGAAATTAACCTTT CAMSISNFGNEKLTF TRAV12-3*01 TRAJ48*01 59.0 2425.0 CAMSISNFGNEKLTF_ 13 6261 PGT-178 PGT 0.93 1480 PGT-178 169 6092 3 HomoSapiens PGT LLAGIGTVPI Naive T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*02:01 B2M MHCI -11999 chip0514_14255 13.22 11.97 Chip3 T1D_7 T1D _ 6746 2521 EBV-BRLF1 EBV 0.96 1264 EBV-BRLF1 172 2349 11 EBV BRLF1 YVLDHLIVV effector T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*02:01 B2M MHCI -12000 chip0514_23331 -2.63 11.86 Chip3 T1D_7 T1D TGCAGCGCCGACAGGGACAATGAGCAGTTCTTC CSADRDNEQFF TRBV29-1*01 TRBJ2-1*01 64.0 4687.0 _CSADRDNEQFF 1 6926 HCVNS3-1073-1081 HCV 0.75 36 NEG 176 6750 4 HCV NS3 CINGVCWTV Naive T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*02:01 B2M MHCI -12001 chip0514_698597 15.74 11.49 Chip3 T1D_7 T1D TGTGCCCCCCGTGATTTGCTTCAGAGGGCGGGACACCGGGGAGCTGTTTTTT CAPRDLLQag??ggRDTGELFF TRBV24-1*01 TRBJ2-2*01 8.0 442.0 _CAPRDLLQag??ggRDTGELFF 1 2544 CVB3-P3A CVB 0.78 77 CVB3-P3A 187 2357 12 CoxsackievirusB P3A GIIYIIYKL effector T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*02:01 B2M MHCI -12002 chip0514_439966 -3.91 7.45 Chip3 T1D_7 T1D TGTGCTGGAGCGGGGGCGTGACTGATGTTT CAGAGA*LMF TRAV27*01 TRAJ31*01 3.0 567.0 TGTGCCAGCAGTTTCCTAGCGGGGGCCGGGGGTGAGCAGTTCTTC CASSFLAGAGGEQFF TRBV27*01 TRBJ2-1*01 71.0 5455.0 CAGAGA*LMF_CASSFLAGAGGEQFF 1 8196 POL-132-140 HIV 0.76 37 POL-132-140 173 8023 2 HIV-1 POL LVGPTPVNI Naive T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*02:01 B2M MHCI -12003 chip0514_599221 -2.96 7.7 Chip3 T1D_7 T1D TGTGCCAGCAGCGTAGCTCTAGCGGGCAACGAGCAGTACTTC CASSVALAGNEQYF TRBV9*01 TRBJ2-7*01 27.0 1569.0 _CASSVALAGNEQYF 1 9192 PGT-178 PGT 0.7 1480 PGT-178 159 9033 2 HomoSapiens PGT LLAGIGTVPI Naive T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*02:01 B2M MHCI -12004 chip0514_666525 8.79 11.93 Chip3 T1D_7 T1D TGTGCCAGCAGTCGACAGGGAGGATCTAACTATGGCTACACCTTC CASSRQGGSNYGYTF TRBV6-1*01 TRBJ1-2*01 3.0 289.0 _CASSRQGGSNYGYTF 1 5393 EBV-LMP2-FLY EBV 0.92 355 EBV-LMP2-FLY 164 5229 7 EBV LMP2 FLYALALLL transitional T cells between effector and memory populations PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*02:01 B2M MHCI -12005 chip0514_228794 15.36 10.06 Chip3 T1D_8 T1D TGCAGCGTTGAAAATCACGCGACAGGGGGCCGCGTCACCTTC CSVENHATGGRVTF TRBV29-1*01 TRBJ1-2*01 2.0 29.0 _CSVENHATGGRVTF 1 3465 EBV-BRLF1 EBV 0.93 1264 EBV-BRLF1 193 3272 12 EBV BRLF1 YVLDHLIVV effector T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*02:01 B2M MHCI -12006 chip0514_690455 -3.84 9.85 Chip3 T1D_7 T1D TGTGCCAGCAGCCGGACTAGCAGCTACAATGAGCAGTTCTTC CASSRTSSYNEQFF TRBV7-6*01 TRBJ2-1*01 33.0 1705.0 _CASSRTSSYNEQFF 1 6317 PTPRN-172-180 PTPRN 0.84 4 PTPRN-172-180 153 6164 4 HomoSapiens PTPRN SLSPLQAEL Naive T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*02:01 B2M MHCI -12007 chip0514_210398 11.41 11.67 Chip3 T1D_7 T1D TGTGCCAGCGTTATAAATTTGGGCGGAGCGAGCGAGCAGTACTTC CASVINLGGASEQYF TRBV28*01 TRBJ2-7*01 10.0 392.0 _CASVINLGGASEQYF 1 4038 EBV-BRLF1 EBV 0.94 1264 EBV-BRLF1 171 3867 9 EBV BRLF1 YVLDHLIVV effector memory T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*02:01 B2M MHCI -12008 chip0514_227186 15.61 9.78 Chip3 T1D_7 T1D TGTGCTACGGAAGGAGATTCAGGATACAGCACCCTCACCTTT CATEGDSGYSTLTF TRAV17*01 TRAJ11*01 23.0 823.0 CATEGDSGYSTLTF_ 12 3983 EBV-LMP2-FLY EBV 0.9 355 EBV-LMP2-FLY 171 3812 12 EBV LMP2 FLYALALLL effector T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*02:01 B2M MHCI -12009 chip0514_54615 -1.48 7.09 Chip3 T1D_7 T1D TGTGCATTCCTCATATCTAACTTTGGAAATGAGAAATTAACCTTT CAFLISNFGNEKLTF TRAV12-3*01 TRAJ48*01 60.0 1623.0 TGTGCCAGCAGCCATGCACTAACGGGAGAGGAGACAGATACGCAGTATTTT CASSHALTGEETDTQYF TRBV11-2*01 TRBJ2-3*01 19.0 864.0 CAFLISNFGNEKLTF_CASSHALTGEETDTQYF 1 6315 PGT-178 PGT 0.74 1480 PGT-178 160 6155 3 HomoSapiens PGT LLAGIGTVPI Naive T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*02:01 B2M MHCI -12010 chip0514_246473 -4.38 11.16 Chip3 T1D_7 T1D TGCAGCGTTGAGACGGGACAGGGGATGGACATTCAGTACTTC CSVETGQGMDIQYF TRBV29-1*01 TRBJ2-4*01 192.0 12750.0 _CSVETGQGMDIQYF 1 5705 GP160-311-320 HIV 0.94 109 GP160-311-320 142 5563 1 HIV-1 GP160 RGPGRAFVTI Naive T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*02:01 B2M MHCI -12011 chip0514_503228 12.22 6.23 Chip3 T1D_8 T1D TGTGCTACGGTGGGGGATTCAGGATACAGCACCCTCACCTTT CATVGDSGYSTLTF TRAV17*01 TRAJ11*01 9.0 492.0 TGTGCCAGCAGCTTACAGGGTGGGAACATTCAGTACTTC CASSLQGGNIQYF TRBV6-1*01 TRBJ2-4*01 36.0 1466.0 CATVGDSGYSTLTF_CASSLQGGNIQYF 1 6516 EBV-LMP2-FLY EBV 0.83 355 EBV-LMP2-FLY 179 6337 10 EBV LMP2 FLYALALLL effector memory T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*02:01 B2M MHCI -12012 chip0514_377631 -3.76 11.76 Chip3 T1D_7 T1D TGTGCCGTGAACATGGGCGGGGGTTACCAGAAAGTTACCTTT CAVNMGGGYQKVTF TRAV12-2*01 TRAJ13*01 1.0 18.0 CAVNMGGGYQKVTF_ 1 6383 ZNT8-115-123 ZNT8 1.0 74 ZNT8-115-123 145 6238 1 HomoSapiens ZNT8 LLSLFSLWL Naive T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*02:01 B2M MHCI -12013 chip0514_246795 8.29 11.38 Chip3 T1D_7 T1D TGTGCTACGGAAGGAGATTCAGGATACAGCACCCTCACCTTT CATEGDSGYSTLTF TRAV17*01 TRAJ11*01 67.0 3106.0 TGTGCCCGCAGTCCACAGGGGGGCGGATATGGCTACACCTTC CARSPQGGGYGYTF TRBV6-1*01 TRBJ1-2*01 2.0 21.0 CATEGDSGYSTLTF_CARSPQGGGYGYTF 1 6189 EBV-LMP2-FLY EBV 0.97 355 EBV-LMP2-FLY 146 6043 7 EBV LMP2 FLYALALLL transitional T cells between effector and memory populations PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*02:01 B2M MHCI -12014 chip0514_446176 14.77 8.65 Chip3 T1D_8 T1D _ 6746 2738 EBV-BLMF1 EBV 0.95 2531 EBV-BLMF1 173 2565 12 EBV BLMF1 GLCTLVAML effector T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*02:01 B2M MHCI -12015 chip0514_760118 -3.3 11.91 Chip3 T1D_7 T1D TGTGCCAGTAGTATTTTAGGCCTTAGCAATCAGCCCCAGCATTTT CASSILGLSNQPQHF TRBV19*01 TRBJ1-5*01 3.0 86.0 _CASSILGLSNQPQHF 1 5643 MART1-A28L MART1 0.93 84 MART1-A28L 183 5460 1 HomoSapiens MART1 ALGIGILTV Naive T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*02:01 B2M MHCI -12016 chip0514_604970 14.22 8.14 Chip3 T1D_7 T1D TGTGCTGTGAGAGCTTTTTCTGGTGGCTACAATAAGCTGATTTTT CAVRAFSGGYNKLIF TRAV3*01 TRAJ4*01 1.0 41.0 TGTGCCAGCAGGGCGGAGGCCTATCTGAACACCGGGGAGCTGTTTTTT CASRAEAYLNTGELFF TRBV6-1*01 TRBJ2-2*01 7.0 173.0 CAVRAFSGGYNKLIF_CASRAEAYLNTGELFF 1 3981 EBV-BLMF1 EBV 0.85 2531 EBV-BLMF1 195 3786 10 EBV BLMF1 GLCTLVAML effector memory T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*02:01 B2M MHCI -12017 chip0514_197016 -2.95 10.1 Chip3 T1D_8 T1D TGCGCCGTGGGTAAGGCTGCAGGCAACAAGCTAACCTTT CAVGKAAGNKLTF TRAV12-2*01 TRAJ17*01 11.0 656.0 CAVGKAAGNKLTF_ 1 4454 ROTA-VP3 ROTA 1.0 41 ROTA-VP3 154 4300 3 RotavirusA VP3 YLLPGWKL Naive T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*02:01 B2M MHCI -12018 chip0514_142643 -4.28 8.86 Chip3 T1D_7 T1D TGTGCAATGAGCGCTTCTAACTTTGGAAATGAGAAATTAACCTTT CAMSASNFGNEKLTF TRAV12-3*01 TRAJ48*01 23.0 566.0 TGTGCCAGCCTAAGTAACAGGTGGGACACTGAAGCTTTCTTT CASLSNRWDTEAFF TRBV2*01 TRBJ1-1*01 34.0 1428.0 CAMSASNFGNEKLTF_CASLSNRWDTEAFF 1 6461 PGT-178 PGT 0.89 1480 PGT-178 181 6280 2 HomoSapiens PGT LLAGIGTVPI Naive T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*02:01 B2M MHCI -12019 chip0514_449202 14.39 11.12 Chip3 T1D_7 T1D TGTGCCGCAGGGGCTGCAGGCAACAAGCTAACTTTT CAAGAAGNKLTF TRAV8-1*01 TRAJ17*01 1.0 29.0 TGTGCCAGCAGCTTATTCAAGGATGCGTCCGGGGAGCTGTTTTTT CASSLFKDASGELFF TRBV11-3*01 TRBJ2-2*01 4.0 94.0 CAAGAAGNKLTF_CASSLFKDASGELFF 1 3374 EBV-BRLF1 EBV 0.91 1264 EBV-BRLF1 159 3215 12 EBV BRLF1 YVLDHLIVV effector T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*02:01 B2M MHCI -12020 chip0514_131407 -1.91 7.71 Chip3 T1D_7 T1D _ 6746 6788 HCV-35-44 HCV 0.64 13 NEG 182 6606 4 HCV POL YLLPRRGPRL Naive T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*02:01 B2M MHCI -12021 chip0514_255925 9.86 11.06 Chip3 T1D_7 T1D TGTGCCGTGAAGGACACCGACAAGCTCATCTTT CAVKDTDKLIF TRAV8-1*01 TRAJ34*01 16.0 872.0 CAVKDTDKLIF_ 56 5202 EBV-BRLF1 EBV 0.96 1264 EBV-BRLF1 167 5035 9 EBV BRLF1 YVLDHLIVV effector memory T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*02:01 B2M MHCI -12022 chip0514_142919 -1.93 7.51 Chip3 T1D_7 T1D TGTGCAATGAGCTTAGATAACTATGGTCAGAATTTTGTCTTT CAMSLDNYGQNFVF TRAV12-3*01 TRAJ26*01 49.0 2191.0 CAMSLDNYGQNFVF_ 1 6070 PGT-178 PGT 0.52 1480 PGT-178 154 5916 4 HomoSapiens PGT LLAGIGTVPI Naive T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*02:01 B2M MHCI -12023 chip0514_247680 7.91 11.31 Chip3 T1D_7 T1D TGTGCCAGCAGTTTCCCCTACGCAGGGGCGGCAAACAATGAGCAGTTCTTC CASSFPYAGAANNEQFF TRBV12-3*01,TRBV12-4*01 TRBJ2-1*01 20.0 818.0 _CASSFPYAGAANNEQFF 1 5950 EBV-BRLF1 EBV 0.9 1264 EBV-BRLF1 148 5802 7 EBV BRLF1 YVLDHLIVV transitional T cells between effector and memory populations PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*02:01 B2M MHCI -12024 chip0514_662439 -2.84 7.52 Chip3 T1D_7 T1D TGTGCCGTTCGCGGAGGTGCTGACGGACTCACCTTT CAVRGGADGLTF TRAV8-1*01 TRAJ45*01 15.0 1068.0 TGTGCCAGCAGCTTGGCCGAATACAATGAGCAGTTCTTC CASSLAEYNEQFF TRBV5-5*01 TRBJ2-1*01 59.0 2973.0 CAVRGGADGLTF_CASSLAEYNEQFF 1 8597 EBV-LMP1-1 EBV 0.9 237 EBV-LMP1-1 158 8439 2 EBV LMP1 YLLEMLWRL Naive T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*02:01 B2M MHCI -12025 chip0514_333341 13.13 11.32 Chip3 T1D_7 T1D TGCAGTGCTACAGACAGTACCTACAATGAGCAGTTCTTC CSATDSTYNEQFF TRBV20-1*01 TRBJ2-1*01 19.0 1034.0 _CSATDSTYNEQFF 6 3916 EBV-BRLF1 EBV 1.0 1264 EBV-BRLF1 160 3756 9 EBV BRLF1 YVLDHLIVV effector memory T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*02:01 B2M MHCI -12026 chip0514_21245 -1.0 6.89 Chip3 T1D_7 T1D TGTGCCAGTAGTGCTAGCGGGGCTTACAATGAGCAGTTCTTC CASSASGAYNEQFF TRBV19*01 TRBJ2-1*01 8.0 395.0 _CASSASGAYNEQFF 1 6033 M1 FLU 0.68 1250 M1 167 5866 3 InfluenzaA M1 GILGFVFTL Naive T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*02:01 B2M MHCI -12027 chip0514_75919 -4.16 7.66 Chip3 T1D_7 T1D TGTGCCGCCCCCGAGGGAAACACACCTCTTGTCTTT CAAPEGNTPLVF TRAV12-2*01 TRAJ29*01 7.0 369.0 TGTGCCAGCAGCTTAGTCGGGACAGATACGCAGTATTTT CASSLVGTDTQYF TRBV11-3*01 TRBJ2-3*01 3.0 99.0 CAAPEGNTPLVF_CASSLVGTDTQYF 1 6517 PGT-178 PGT 0.78 1480 PGT-178 178 6339 2 HomoSapiens PGT LLAGIGTVPI Naive T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*02:01 B2M MHCI -12028 chip0514_552740 14.9 12.91 Chip3 T1D_7 T1D TGTGCCACCAGTGGCTGGCAGGGTTCGGAAGAGACCCAGTACTTC CATSGWQGSEETQYF TRBV24-1*01 TRBJ2-5*01 67.0 3112.0 _CATSGWQGSEETQYF 6 1800 EBV-BRLF1 EBV 0.86 1264 EBV-BRLF1 165 1635 12 EBV BRLF1 YVLDHLIVV effector T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*02:01 B2M MHCI -12029 chip0514_569991 11.71 6.66 Chip3 T1D_7 T1D TGTGCCAGCAGTTCCCTATCGGGAAGCGGTCAGCCCCAGCATTTT CASSSLSGSGQPQHF TRBV28*01 TRBJ1-5*01 7.0 257.0 _CASSSLSGSGQPQHF 23 5826 EBV-BRLF1 EBV 0.91 1264 EBV-BRLF1 177 5649 10 EBV BRLF1 YVLDHLIVV effector memory T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*02:01 B2M MHCI -12030 chip0514_292740 -0.84 10.15 Chip3 T1D_7 T1D TGTGCCAGCAGCCCACTAGCGGGAGAGACCCAGTACTTC CASSPLAGETQYF TRBV7-9*01 TRBJ2-5*01 20.0 1119.0 _CASSPLAGETQYF 1 7676 INS-6-16 INS 0.65 20 NEG 157 7519 3 HomoSapiens INS RLLPLLALLAL Naive T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*02:01 B2M MHCI -12031 chip0514_347755 10.96 8.83 Chip3 T1D_7 T1D TGTGCCGTGAAGGACACCGACAAGCTCATCTTT CAVKDTDKLIF TRAV8-1*01 TRAJ34*01 25.0 2332.0 CAVKDTDKLIF_ 56 6041 EBV-BRLF1 EBV 0.98 1264 EBV-BRLF1 182 5859 10 EBV BRLF1 YVLDHLIVV effector memory T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*02:01 B2M MHCI -12032 chip0514_382803 -3.94 7.68 Chip3 T1D_7 T1D TGTGCCGTGGAAGGCTGGGGCACCGACAAGCTCATCTTT CAVEGWGTDKLIF TRAV12-2*01 TRAJ34*01 20.0 956.0 CAVEGWGTDKLIF_ 1 8457 GAG-433-442 HIV 0.65 19 GAG-433-442 166 8291 2 HIV-1 GAG FLGKIWPSYK Naive T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*02:01 B2M MHCI -12033 chip0514_314309 -3.86 9.45 Chip3 T1D_7 T1D _ 6746 6705 MART1-ALA MART1 0.62 269 MART1-ALA 156 6549 2 HomoSapiens MART1 ALAGIGILTV Naive T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*02:01 B2M MHCI -12034 chip0514_552053 -2.09 12.39 Chip3 T1D_7 T1D TGTGCAATGAGCGAATCTAACTTTGGAAATGAGAAATTAACCTTT CAMSESNFGNEKLTF TRAV12-3*01 TRAJ48*01 15.0 476.0 TGTGCCAGCAGCTTGGCGTCGGCAGCGAGCAATCAGCCCCAGCATTTT CASSLASAASNQPQHF TRBV5-6*01 TRBJ1-5*01 9.0 379.0 CAMSESNFGNEKLTF_CASSLASAASNQPQHF 1 5268 PGT-178 PGT 0.76 1480 PGT-178 201 5067 4 HomoSapiens PGT LLAGIGTVPI Naive T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*02:01 B2M MHCI -12035 chip0514_193164 7.09 13.04 Chip3 T1D_8 T1D TGTGCCGTGGAGACCGGTAACCCGTTCTATTTT CAVETGNPFYF TRAV12-2*01 TRAJ49*01 11.0 1306.0 TGTGCTGTGAGCTGGAGGAAGCCAAGGAAATCTCATCTTT CAVSWRaa??gcQGNLIF TRAV8-6*01 TRAJ42*01 15.0 707.0 0.47 TGTGCCTGGAGTGTTGGTCAGGGTGAAGCTTTCTTT CAWSVGQGEAFF TRBV30*01 TRBJ1-1*01 16.0 747.0 CAVETGNPFYF_CAWSVGQGEAFF 1 3945 ROTA-VP6 ROTA 0.61 47 ROTA-VP6 182 3763 7 RotavirusA VP6 TLLANVTAV transitional T cells between effector and memory populations PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*02:01 B2M MHCI -12036 chip0514_275664 -3.46 12.23 Chip3 T1D_7 T1D _ 6746 4517 IAPP-5-13 IAPP 0.67 30 NEG 169 4348 1 HomoSapiens IAPP KLQVFLIVL Naive T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*02:01 B2M MHCI -12037 chip0514_777109 -3.35 12.07 Chip3 T1D_7 T1D _ 6746 5296 GP160-311-320 HIV 0.55 109 NEG 180 5116 1 HIV-1 GP160 RGPGRAFVTI Naive T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*02:01 B2M MHCI -12038 chip0514_191403 15.88 12.0 Chip3 T1D_8 T1D TGTGCAGAGAGTAGCGGGGCCTCCGGCAAACTAATCTTT CAESSGASGKLIF TRAV5*01 TRAJ37*01 5.0 370.0 TGCAGCGTGGGGACAGGGGGCACTAATGAAAAACTGTTTTTT CSVGTGGTNEKLFF TRBV29-1*01 TRBJ1-4*01 34.0 1569.0 CAESSGASGKLIF_CSVGTGGTNEKLFF 7 2066 EBV-BLMF1 EBV 1.0 2531 NEG 176 1890 12 EBV BLMF1 GLCTLVAML effector T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*02:01 B2M MHCI -12039 chip0514_784030 6.15 12.31 Chip3 T1D_8 T1D TGTGCTTTCATGATTGGCGCTGGTGGTACTAGCTATGGAAAGCCGACATTT CAFMIGAGGTSYGKPTF TRAV38-1*01 TRAJ52*01 56.0 1536.0 TGTGCCAGTAGTATGGGGTCCTATGGCTACACCTTC CASSMGSYGYTF TRBV19*01 TRBJ1-2*01 15.0 1070.0 CAFMIGAGGTSYGKPTF_CASSMGSYGYTF 1 5922 M1 FLU 0.97 1250 M1 180 5742 7 InfluenzaA M1 GILGFVFTL transitional T cells between effector and memory populations PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*02:01 B2M MHCI -12040 chip0514_843278 15.82 12.12 Chip3 T1D_8 T1D TGTGCCGTGAATTCAGGATACAGCACCCTCACCTCT CAVNSGYSTLTS TRAV8-1*01 TRAJ11*01 9.0 608.0 TGTGCCAGCAGTCCCCTCCAGGGGAGCGGCACTGAAGCTTTCTTT CASSPLQGSGTEAFF TRBV28*01 TRBJ1-1*01 56.0 2180.0 CAVNSGYSTLTS_CASSPLQGSGTEAFF 1 2146 EBV-BRLF1 EBV 0.95 1264 EBV-BRLF1 177 1969 12 EBV BRLF1 YVLDHLIVV effector T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*02:01 B2M MHCI -12041 chip0514_408815 -2.31 8.13 Chip3 T1D_7 T1D TGTGCCCCTCAGGCGACCGACAAGCTCATCTTT CAPQATDKLIF TRAV12-1*01 TRAJ34*01 5.0 604.0 TGTGCCAGCAGTGCTTCTGGTAACATTCAGTACTTC CASSASGNIQYF TRBV2*01 TRBJ2-4*01 43.0 2918.0 CAPQATDKLIF_CASSASGNIQYF 1 7641 ZNT8-115-123 ZNT8 0.93 74 ZNT8-115-123 144 7497 2 HomoSapiens ZNT8 LLSLFSLWL Naive T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*02:01 B2M MHCI -12042 chip0514_424515 -2.79 11.28 Chip3 T1D_7 T1D TGTGCAATGGCCCAATCTAACTTTGGAAATGAGAAATTAACCTTT CAMAQSNFGNEKLTF TRAV12-3*01 TRAJ48*01 13.0 443.0 TGTGCCAGCAGCTTAGCCCTCCCACTAGCGCGGAATGAGCAGTTCTTC CASSLALPLARNEQFF TRBV11-3*01 TRBJ2-1*01 10.0 195.0 CAMAQSNFGNEKLTF_CASSLALPLARNEQFF 1 5879 PGT-178 PGT 0.78 1480 PGT-178 157 5722 1 HomoSapiens PGT LLAGIGTVPI Naive T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*02:01 B2M MHCI -12043 chip0514_81471 6.25 14.28 Chip3 T1D_7 T1D TGTGCCAGCAGCCACGTCGAGCAGTTCTTC CASSHVEQFF TRBV7-9*01 TRBJ2-1*01 23.0 1862.0 _CASSHVEQFF 1 5071 ZNT8-221-229 ZNT8 0.43 4 NEG 187 4884 7 HomoSapiens ZNT8 ALGDLFQSI transitional T cells between effector and memory populations PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*02:01 B2M MHCI -12044 chip0514_77936 8.63 10.3 Chip3 T1D_8 T1D TGTGCCAGCAGTTTTACAGTCTCTAGGCAGCCCCAGCATTTT CASSFTVSRQPQHF TRBV27*01 TRBJ1-5*01 21.0 939.0 _CASSFTVSRQPQHF 1 4881 EBV-BRLF1 EBV 1.0 1264 NEG 185 4696 8 EBV BRLF1 YVLDHLIVV effector memory T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*02:01 B2M MHCI -12045 chip0514_695159 -2.0 9.13 Chip3 T1D_8 T1D TGTGCAATGAGCTTTTCTAACTTTGGAAATGAGAAATTAACCTTT CAMSFSNFGNEKLTF TRAV12-3*01 TRAJ48*01 14.0 250.0 TGTGCCAGCAAATCTCCCGACCCCAGGGGAAACACTGAAGCTTTCTTT CASKSPDPRGNTEAFF TRBV6-1*01 TRBJ1-1*01 2.0 54.0 CAMSFSNFGNEKLTF_CASKSPDPRGNTEAFF 1 7145 PGT-178 PGT 0.72 1480 PGT-178 162 6983 3 HomoSapiens PGT LLAGIGTVPI Naive T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*02:01 B2M MHCI -12046 chip0514_378870 9.64 11.37 Chip3 T1D_7 T1D TGTGCCGTGAAGGACACCGACGCGCTCGTCTTT CAVKDTDALVF TRAV8-1*01 TRAJ34*01 5.0 370.0 CAVKDTDALVF_ 1 4520 EBV-BRLF1 EBV 0.92 1264 EBV-BRLF1 179 4341 9 EBV BRLF1 YVLDHLIVV effector memory T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*02:01 B2M MHCI -12047 chip0514_550404 -4.18 10.02 Chip3 T1D_7 T1D TGTGCAGCAAGCGATTATGGCGGCAGCCCCGGCCTTCTCCTCTTT CAASDYGGSPGLLLF TRAV29/DV5*01 TRAJ42*01 4.0 177.0 TGTGCCAGCAGCGGGGGCCCCGAGCAGTACTTC CASSGGPEQYF TRBV2*01 TRBJ2-7*01 14.0 1018.0 CAASDYGGSPGLLLF_CASSGGPEQYF 1 6498 GP160-311-320 HIV 0.94 109 GP160-311-320 156 6342 2 HIV-1 GP160 RGPGRAFVTI Naive T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*02:01 B2M MHCI -12048 chip0514_535391 -1.06 7.13 Chip3 T1D_7 T1D TGTGCCGTGCCCAATACCGGCACTGCCAGTAAACTCACCTTT CAVPNTGTASKLTF TRAV12-2*01 TRAJ44*01 23.0 1108.0 CAVPNTGTASKLTF_ 1 6963 MART1-ALA MART1 0.97 269 MART1-ALA 157 6806 3 HomoSapiens MART1 ALAGIGILTV Naive T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*02:01 B2M MHCI -12049 chip0514_206116 11.57 7.48 Chip3 T1D_7 T1D TGTGCTTTAATGCAGGCAACATGCTCACCTTT CALMQg?cNMLTF TRAV8-4*01 TRAJ39*01 11.0 1212.0 CALMQg?cNMLTF_ 1 5748 EBV-LMP2-FLY EBV 0.9 355 EBV-LMP2-FLY 183 5565 10 EBV LMP2 FLYALALLL effector memory T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*02:01 B2M MHCI -12050 chip0514_156053 16.01 10.96 Chip3 T1D_7 T1D TGTGCAGCAAGCGTAAGTAGCGACTATAAACTGACATTT CAASVSSDYKLTF TRAV29/DV5*01 TRAJ53*01 3.0 122.0 TGTGCCAGCAGTTCCTTTCACATACAGGGGGGCTACGAGCAGTACTTC CASSSFHIQGGYEQYF TRBV28*01 TRBJ2-7*01 93.0 3690.0 CAASVSSDYKLTF_CASSSFHIQGGYEQYF 1 2894 IGRP-265-273 IGRP 0.84 34 IGRP-265-273 207 2687 12 HomoSapiens IGRP VLFGLGFAI effector T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*02:01 B2M MHCI -12051 chip0514_539788 -2.34 10.6 Chip3 T1D_7 T1D TGTGCCAGCAGCCCGGGATCTCTAGCCAAAAACATTCAGTACTTC CASSPGSLAKNIQYF TRBV12-3*01,TRBV12-4*01 TRBJ2-4*01 37.0 1818.0 _CASSPGSLAKNIQYF 1 5638 PGT-178 PGT 0.56 1480 PGT-178 146 5492 3 HomoSapiens PGT LLAGIGTVPI Naive T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*02:01 B2M MHCI -12052 chip0514_823128 13.33 7.32 Chip3 T1D_8 T1D _ 6746 3513 EBV-BLMF1 EBV 0.97 2531 EBV-BLMF1 190 3323 10 EBV BLMF1 GLCTLVAML effector memory T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*02:01 B2M MHCI -12053 chip0514_743116 -4.41 8.38 Chip3 T1D_7 T1D _ 6746 7008 GP160-311-320 HIV 0.76 109 GP160-311-320 170 6838 2 HIV-1 GP160 RGPGRAFVTI Naive T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*02:01 B2M MHCI -12054 chip0514_394238 -1.93 12.41 Chip3 T1D_7 T1D TGTGCTGCAACTCAGGGCGGATCTGAAAAGCTGGTCTTT CAATQGGSEKLVF TRAV21*01,TRAV12-3*01 TRAJ57*01 2.0 221.0 TGTGCCAGCAGTCTCTGGACGGAGGGCTCCGAGCAGTACTTC CASSLWTEGSEQYF TRBV6-2*01,TRBV6-3*01 TRBJ2-7*01 13.0 557.0 CAATQGGSEKLVF_CASSLWTEGSEQYF 1 4560 DUF5119-124-133 DUF5119 0.86 7 DUF5119-124-133 157 4403 1 HomoSapiens DUF5119 MVWGPDPLYV Naive T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*02:01 B2M MHCI -12055 chip0514_530776 -4.38 8.83 Chip3 T1D_7 T1D _ 6746 7270 HCVNS3-1073-1081 HCV 0.96 36 HCVNS3-1073-1081 170 7100 2 HCV NS3 CINGVCWTV Naive T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*02:01 B2M MHCI -12056 chip0514_664459 -0.76 7.49 Chip3 T1D_7 T1D TGTGCCAGCAGTCAGGGGTACGAGCAGTACTTC CASSQGYEQYF TRBV6-1*01 TRBJ2-7*01 7.0 601.0 _CASSQGYEQYF 1 6732 ZNT8-314-322 ZNT8 0.65 16 ZNT8-314-322 155 6577 3 HomoSapiens ZNT8 ILSAHVATA Naive T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*02:01 B2M MHCI -12057 chip0514_647183 6.86 10.65 Chip3 T1D_7 T1D TGTGCCAGCAGTTACCAAGGGGGGCGCGGAGGCTACACCTTC CASSYQGGRGGYTF TRBV6-5*01,TRBV6-8*01 TRBJ1-2*01 3.0 70.0 _CASSYQGGRGGYTF 1 6634 EBV-LMP2-FLY EBV 0.87 355 EBV-LMP2-FLY 196 6438 7 EBV LMP2 FLYALALLL transitional T cells between effector and memory populations PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*02:01 B2M MHCI -12058 chip0514_749291 -0.44 7.67 Chip3 T1D_7 T1D _ 6746 7350 PGT-178 PGT 0.68 1480 PGT-178 147 7203 4 HomoSapiens PGT LLAGIGTVPI Naive T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*02:01 B2M MHCI -12059 chip0514_762358 -4.38 10.57 Chip3 T1D_7 T1D TGTGCTGTGCCAAATACTGGAGGCTTCAAAACTATCTTT CAVPNTGGFKTIF TRAV20*01 TRAJ9*01 9.0 360.0 TGTGCCAGCAGTTTACGGGGGGAATACTTTGGCTACACCTTC CASSLRGEYFGYTF TRBV27*01 TRBJ1-2*01 1.0 19.0 CAVPNTGGFKTIF_CASSLRGEYFGYTF 1 6677 POL-132-140 HIV 0.77 37 NEG 171 6506 2 HIV-1 POL LVGPTPVNI Naive T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*02:01 B2M MHCI -12060 chip0514_642006 -3.29 12.72 Chip3 T1D_7 T1D TGTGCCAGCAGCTTGGAACTGACTTCCTACGAGCAGTACTTC CASSLELTSYEQYF TRBV5-5*01 TRBJ2-7*01 60.0 3229.0 _CASSLELTSYEQYF 1 5712 POL-132-140 HIV 1.0 37 NEG 155 5557 1 HIV-1 POL LVGPTPVNI Naive T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*02:01 B2M MHCI -12061 chip0514_214839 8.47 11.85 Chip3 T1D_7 T1D TGTGCCAGCAGTTCCCAGGGGGGGGGCGACGAGGCTTTCTTT CASSSQGGGDEAFF TRBV6-5*01 TRBJ1-1*01 10.0 232.0 _CASSSQGGGDEAFF 1 4790 EBV-LMP2-FLY EBV 0.87 355 EBV-LMP2-FLY 161 4629 7 EBV LMP2 FLYALALLL transitional T cells between effector and memory populations PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*02:01 B2M MHCI -12062 chip0514_648011 8.61 11.77 Chip3 T1D_7 T1D TGTGCCAGCAGTCGACAGGGAGGATCTAACTTATGGCTACACCTT CASSRQGGSNLWLHL TRBV6-1*01 TRBJ1-2*01 6.0 265.0 _CASSRQGGSNLWLHL 1 5426 EBV-LMP2-FLY EBV 0.89 355 EBV-LMP2-FLY 142 5284 7 EBV LMP2 FLYALALLL transitional T cells between effector and memory populations PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*02:01 B2M MHCI -12063 chip0514_360176 12.2 6.44 Chip3 T1D_7 T1D TGTGCTGTTCTCATGGATAGCAACTATCAGTTAATCTGG CAVLMDSNYQLIW TRAV21*01 TRAJ33*01 13.0 1123.0 TGCGCCAGCAGTGGGGACGGGATGAACACTGAAGCTTTCTTT CASSGDGMNTEAFF TRBV10-2*01 TRBJ1-1*01 16.0 608.0 CAVLMDSNYQLIW_CASSGDGMNTEAFF 20 8494 EBV-LMP2A EBV 0.96 700 EBV-LMP2A 162 8332 10 EBV LMP2A CLGGLLTMV effector memory T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*02:01 B2M MHCI -12064 chip0514_239025 -0.88 10.33 Chip3 T1D_8 T1D TGTGCAATGAGTATATCTAACTTTGGAAATGAGAAATTAACCTTT CAMSISNFGNEKLTF TRAV12-3*01 TRAJ48*01 9.0 233.0 TGCGCCAGCAGCCAAGGCGGGGGCAGCACTGAAGCTTTCTTT CASSQGGGSTEAFF TRBV4-1*01 TRBJ1-1*01 26.0 1254.0 CAMSISNFGNEKLTF_CASSQGGGSTEAFF 1 4861 PGT-178 PGT 0.78 1480 PGT-178 160 4701 3 HomoSapiens PGT LLAGIGTVPI Naive T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*02:01 B2M MHCI -12065 chip0514_466741 11.37 7.31 Chip3 T1D_8 T1D _ 6746 7337 EBV-LMP2-FLY EBV 1.0 355 EBV-LMP2-FLY 150 7187 10 EBV LMP2 FLYALALLL effector memory T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*02:01 B2M MHCI -12066 chip0514_868208 -2.31 13.65 Chip3 T1D_7 T1D TGTGCCGTGAACCCCAACACCGGTAACCAGTTCTATTTT CAVNPNTGNQFYF TRAV12-2*01 TRAJ49*01 10.0 547.0 CAVNPNTGNQFYF_ 1 4547 MART1-ALA MART1 0.7 269 MART1-ALA 185 4362 1 HomoSapiens MART1 ALAGIGILTV Naive T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*02:01 B2M MHCI -12067 chip0514_575186 15.68 11.57 Chip3 T1D_7 T1D TGCAGCGTAGGGGACGGCGGGACTAATGAAAAACTGTTTTTT CSVGDGGTNEKLFF TRBV29-1*01 TRBJ1-4*01 99.0 4953.0 _CSVGDGGTNEKLFF 4 2917 EBV-BLMF1 EBV 0.92 2531 NEG 174 2743 12 EBV BLMF1 GLCTLVAML effector T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*02:01 B2M MHCI -12068 chip0514_42071 9.75 10.71 Chip3 T1D_7 T1D TGTGCCAGCAGTTTTAATGTGGGGACCGTTCCCTACGAGCAGTACTTC CASSFNVGTVPYEQYF TRBV27*01 TRBJ2-7*01 64.0 3118.0 _CASSFNVGTVPYEQYF 7 6129 EBV-BRLF1 EBV 0.9 1264 EBV-BRLF1 165 5964 9 EBV BRLF1 YVLDHLIVV effector memory T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*02:01 B2M MHCI -12069 chip0514_690395 -2.85 8.75 Chip3 T1D_7 T1D TGTGCCGTGACTTTAGGCTTT CAVTLGF TRAV12-2*01 TRAJ37*01 4.0 28.0 TGTGCCAGCAGATCCGACAGGGCCCTAATCTATGGCTACACCTT CASRSDRg?cPNLWLHL TRBV12-3*01,TRBV12-4*01 TRBJ1-2*01 6.0 231.0 CAVTLGF_CASRSDRg?cPNLWLHL 1 8290 PGT-178 PGT 0.43 1480 PGT-178 168 8122 2 HomoSapiens PGT LLAGIGTVPI Naive T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*02:01 B2M MHCI -12070 chip0514_684991 -3.76 9.44 Chip3 T1D_7 T1D TGTGCCGTGAGCCTATCTAACTTTGGAAATGAGAAATTAACCTTT CAVSLSNFGNEKLTF TRAV12-2*01 TRAJ48*01 39.0 912.0 CAVSLSNFGNEKLTF_ 1 7175 PGT-178 PGT 0.52 1480 PGT-178 161 7014 2 HomoSapiens PGT LLAGIGTVPI Naive T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*02:01 B2M MHCI -12071 chip0514_677821 -0.98 9.69 Chip3 T1D_7 T1D TGTGCCGTGGACTTCTCATATGGCAGACTCTTGTTT CAVDFSYGRLLF TRAV12-2*01 TRAJ31*01 11.0 558.0 CAVDFSYGRLLF_ 1 5944 PGT-178 PGT 0.94 1480 PGT-178 152 5792 3 HomoSapiens PGT LLAGIGTVPI Naive T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*02:01 B2M MHCI -12072 chip0514_745562 -2.04 12.04 Chip3 T1D_8 T1D TGTGCCGTGACAGGAAGCTACATACCTACATTT CAVTGSYIPTF TRAV12-2*01 TRAJ6*01 30.0 2344.0 TGTGCCAGCAGCCCATCAGGGGTTATCTACGAGCAGTACTTC CASSPSGVIYEQYF TRBV9*01 TRBJ2-7*01 1.0 19.0 CAVTGSYIPTF_CASSPSGVIYEQYF 1 4751 PGT-178 PGT 1.0 1480 NEG 167 4584 1 HomoSapiens PGT LLAGIGTVPI Naive T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*02:01 B2M MHCI -12073 chip0514_66578 -5.02 9.47 Chip3 T1D_7 T1D TGTGCTACGGACAAGTACGACTACAAGCTCAGCTTT CATDKYDYKLSF TRAV17*01 TRAJ20*01 7.0 474.0 CATDKYDYKLSF_ 1 5968 CVB3-P3A CVB 0.57 77 NEG 166 5802 2 CoxsackievirusB P3A GIIYIIYKL Naive T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*02:01 B2M MHCI -12074 chip0514_386181 -3.31 14.1 Chip3 T1D_7 T1D TGTGCTGTGGGTGACAGAGCCAGAGGAAGCCAAGGAAATCTCATCTTT CAVGDRARGSQGNLIF TRAV8-3*01 TRAJ42*01 34.0 1080.0 TGTGCCAGCAGCTGTGGGGGAATCAATGAGCAGTTCTTC CASSCGGINEQFF TRBV7-6*01 TRBJ2-1*01 8.0 511.0 CAVGDRARGSQGNLIF_CASSCGGINEQFF 1 3815 EBV-LMP1-1 EBV 1.0 237 NEG 159 3656 1 EBV LMP1 YLLEMLWRL Naive T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*02:01 B2M MHCI -12075 chip0514_43435 -2.6 9.47 Chip3 T1D_7 T1D TGCCTCGTGGGACAGACCAGACTCATGTTT CLVGQTRLMF TRAV4*01 TRAJ31*01 13.0 1439.0 TGTGCCAGCAGTTTCGGGGGGGGGGACCACTATGAGCAGTACTTC CASSFGGGDHYEQYF TRBV27*01 TRBJ2-7*01 3.0 137.0 CLVGQTRLMF_CASSFGGGDHYEQYF 1 6906 HCVNS3-1073-1081 HCV 0.77 36 HCVNS3-1073-1081 145 6761 3 HCV NS3 CINGVCWTV Naive T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*02:01 B2M MHCI -12076 chip0514_438501 5.69 9.12 Chip3 T1D_8 T1D GGTCAATATGGTGGTGCTACAAACAAGCTCATCTTT GQYGGATNKLIF TRAV14/DV4*01 TRAJ32*01 2.0 9.0 TGTGCCAGCAGTTATCAGGGAGGGAAGGATGGCTACACCTTC CASSYQGGKDGYTF TRBV6-5*01 TRBJ1-2*01 23.0 1171.0 GQYGGATNKLIF_CASSYQGGKDGYTF 1 5979 EBV-LMP2-FLY EBV 0.84 355 EBV-LMP2-FLY 152 5827 6 EBV LMP2 FLYALALLL central memory T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*02:01 B2M MHCI -12077 chip0514_577842 10.61 10.45 Chip3 T1D_7 T1D TGTGCTGTGACACCAAACGCCAGCCTCCTGTTT CAVTPNASLLF TRAV3*01 TRAJ31*01 3.0 94.0 TGTGCCAGCAGTTTATCGGTTAGCGAATTCTACAATGAGCAGTTCTTC CASSLSVSEFYNEQFF TRBV27*01 TRBJ2-1*01 4.0 150.0 CAVTPNASLLF_CASSLSVSEFYNEQFF 1 5762 EBV-BRLF1 EBV 0.83 1264 EBV-BRLF1 211 5551 9 EBV BRLF1 YVLDHLIVV effector memory T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*02:01 B2M MHCI -12078 chip0514_403677 15.22 12.73 Chip3 T1D_7 T1D TGTGCCGTGAAGGACACCGACAAGCTCATCTTT CAVKDTDKLIF TRAV8-1*01 TRAJ34*01 1.0 14.0 TGCAGTGCTACAGACAGTACCTACAATGAGCAGTTCTTC CSATDSTYNEQFF TRBV20-1*01 TRBJ2-1*01 63.0 2712.0 CAVKDTDKLIF_CSATDSTYNEQFF 8 1879 EBV-BRLF1 EBV 1.0 1264 EBV-BRLF1 159 1720 12 EBV BRLF1 YVLDHLIVV effector T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*02:01 B2M MHCI -12079 chip0514_735308 -0.8 9.08 Chip3 T1D_7 T1D _ 6746 6640 GP160-311-320 HIV 0.91 109 GP160-311-320 150 6490 4 HIV-1 GP160 RGPGRAFVTI Naive T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*02:01 B2M MHCI -12080 chip0514_816634 -1.82 9.91 Chip3 T1D_7 T1D TGTGCCTCTCACAGAGATGACAAGATCATCTTT CASHRDDKIIF TRAV8-1*01 TRAJ30*01 1.0 168.0 TGTGCCTGGAGTGCCGACAGCACAGATACGCAGTATTTT CAWSADSTDTQYF TRBV30*01 TRBJ2-3*01 2.0 46.0 CASHRDDKIIF_CAWSADSTDTQYF 1 6292 ROTA-VP3 ROTA 0.7 41 NEG 188 6104 3 RotavirusA VP3 YLLPGWKL Naive T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*02:01 B2M MHCI -12081 chip0514_375703 0.05 4.49 Chip3 T1D_7 T1D TGTGCCAGCAGCATAGACAGTTACTCCTACAATGAGCAGTTCTTC CASSIDSYSYNEQFF TRBV27*01 TRBJ2-1*01 26.0 1459.0 _CASSIDSYSYNEQFF 1 7596 EBV-LMP1-1 EBV 0.5 237 NEG 179 7417 5 EBV LMP1 YLLEMLWRL natural killer-like T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*02:01 B2M MHCI -12082 chip0514_413652 -3.83 9.24 Chip3 T1D_7 T1D TGTGCCGTGAACGCTGGAGGCTTCAAAACTATCTTT CAVNAGGFKTIF TRAV12-2*01 TRAJ9*01 28.0 1581.0 CAVNAGGFKTIF_ 1 6647 PGT-178 PGT 0.41 1480 NEG 181 6466 2 HomoSapiens PGT LLAGIGTVPI Naive T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*02:01 B2M MHCI -12083 chip0514_114408 15.73 10.45 Chip3 T1D_7 T1D TGTGCCACCAGTGGCTGGCAGGGTTCGGAAGAGACCCAGTACTTC CATSGWQGSEETQYF TRBV24-1*01 TRBJ2-5*01 6.0 284.0 _CATSGWQGSEETQYF 6 2933 EBV-BRLF1 EBV 0.97 1264 EBV-BRLF1 160 2773 12 EBV BRLF1 YVLDHLIVV effector T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*02:01 B2M MHCI -12084 chip0514_720024 12.02 8.77 Chip3 T1D_7 T1D TGTGCCGTGAGTTCAGGATACAGCACCCTCACCTTT CAVSSGYSTLTF TRAV8-1*01 TRAJ11*01 3.0 245.0 TGTGCCAGCAGCTCCCTATCGGGAAGCGGTCAGCCCCAGCATTTT CASSSLSGSGQPQHF TRBV28*01 TRBJ1-5*01 48.0 2406.0 CAVSSGYSTLTF_CASSSLSGSGQPQHF 12 4040 EBV-BRLF1 EBV 0.95 1264 EBV-BRLF1 146 3894 10 EBV BRLF1 YVLDHLIVV effector memory T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*02:01 B2M MHCI -12085 chip0514_191577 -1.08 8.89 Chip3 T1D_8 T1D TGTGCAATGACCCTATCTAACTTTGGAAATGAGAAATTAACCTTT CAMTLSNFGNEKLTF TRAV12-3*01 TRAJ48*01 15.0 523.0 CAMTLSNFGNEKLTF_ 2 5440 PGT-178 PGT 0.92 1480 PGT-178 174 5266 4 HomoSapiens PGT LLAGIGTVPI Naive T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*02:01 B2M MHCI -12086 chip0514_75094 -3.84 13.25 Chip3 T1D_7 T1D _ 6746 4156 ZNT8-266-274 ZNT8 0.69 2 NEG 135 4021 1 HomoSapiens ZNT8 ILKDFSILL Naive T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*02:01 B2M MHCI -12087 chip0514_572092 -4.4 8.9 Chip3 T1D_7 T1D TGTGCAATGAGCGCGTCTAACTTTGGAAATGAGAAACTAACCTTT CAMSASNFGNEKLTF TRAV12-3*01 TRAJ48*01 20.0 1376.0 TGTGCCGTGGTCTCCCCTTTAACTTTGGAAATGAGAAATTAACCTTT CAVVSPLac?FGNEKLTF TRAV39*01 TRAJ48*01 40.0 1407.0 0.48 TGTGCCAGCGCCTCAAGGGAGCGGGGGTTCCAAGAGACCCAGTACTTC CASASRERGFQETQYF TRBV3-1*01 TRBJ2-5*01 1.0 60.0 CAMSASNFGNEKLTF_CASASRERGFQETQYF 1 6494 PGT-178 PGT 0.76 1480 PGT-178 150 6344 2 HomoSapiens PGT LLAGIGTVPI Naive T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*02:01 B2M MHCI -12088 chip0514_196396 -0.82 8.48 Chip3 T1D_7 T1D TGTGCCAGCAGCTTGGACGTTGCGGGGGGGGGGGACAATCAGCAGTTCTTC CASSLDVAGGGDNQQFF TRBV5-6*01 TRBJ2-1*01 5.0 336.0 _CASSLDVAGGGDNQQFF 1 6194 PGT-178 PGT 0.44 1480 PGT-178 144 6050 4 HomoSapiens PGT LLAGIGTVPI Naive T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*02:01 B2M MHCI -12089 chip0514_519587 -3.33 13.28 Chip3 T1D_8 T1D TGTGCCATCAGTGAGTCCACCGGGGAGCTGTTTTTT CAISESTGELFF TRBV10-3*01 TRBJ2-2*01 10.0 574.0 _CAISESTGELFF 1 3861 HCVNS4B-1807-1816 HCV 0.93 74 HCVNS4B-1807-1816 135 3726 1 HCV NS4B LLFNILGGWV Naive T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*02:01 B2M MHCI -12090 chip0514_824768 -1.81 8.69 Chip3 T1D_7 T1D TGTGCAATGAGCCTATCTAACTTTGGAAATGAGAAATTAACCTTT CAMSLSNFGNEKLTF TRAV12-3*01 TRAJ48*01 12.0 448.0 TGTGCTGTGGGTCAGAGTATGGCGGCCGCCCAGGAAATCTCATCTTT CAVGQSMgc?GRPGNLIF TRAV8-3*01 TRAJ42*01 17.0 605.0 0.46 CAMSLSNFGNEKLTF_ 16 7537 PGT-178 PGT 0.77 1480 PGT-178 150 7387 3 HomoSapiens PGT LLAGIGTVPI Naive T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*02:01 B2M MHCI -12091 chip0514_222100 -2.51 12.76 Chip3 T1D_7 T1D TGTGCATCAGGAATATCTAACTTTGGAAATGAGAAATTAACCTTT CASGISNFGNEKLTF TRAV12-3*01 TRAJ48*01 36.0 1606.0 TGTGCCAGCAGCCAAGAGGGACAGGGGTTGTCCGGGGAGCTGTTTTTT CASSQEGQGLSGELFF TRBV14*01 TRBJ2-2*01 8.0 271.0 CASGISNFGNEKLTF_CASSQEGQGLSGELFF 1 5005 PGT-178 PGT 0.74 1480 PGT-178 144 4861 4 HomoSapiens PGT LLAGIGTVPI Naive T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*02:01 B2M MHCI -12092 chip0514_795253 -0.06 9.05 Chip3 T1D_7 T1D TGTGCAATGGGACCTCAAGCAGGAACTGCTCTGATCTTT CAMGPQAGTALIF TRAV12-3*01 TRAJ15*01 12.0 932.0 TGTGCCAGCAGCTTAGAGTACAGGGAGTACGAGCAGTACTTC CASSLEYREYEQYF TRBV7-6*01,TRBV11-2*01 TRBJ2-7*01 3.0 74.0 CAMGPQAGTALIF_CASSLEYREYEQYF 1 8384 PGT-178 PGT 0.92 1480 PGT-178 140 8244 4 HomoSapiens PGT LLAGIGTVPI Naive T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*02:01 B2M MHCI -12093 chip0514_69070 -4.22 9.97 Chip3 T1D_7 T1D TGCAGCGTTGAAGTATTCAGACAGGGGAGTTCCTACGAGCAGTACTTC CSVEVFRQGSSYEQYF TRBV29-1*01 TRBJ2-7*01 180.0 8085.0 _CSVEVFRQGSSYEQYF 1 5907 GP160-311-320 HIV 0.63 109 GP160-311-320 143 5764 2 HIV-1 GP160 RGPGRAFVTI Naive T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*02:01 B2M MHCI -12094 chip0514_181130 -1.38 10.43 Chip3 T1D_7 T1D _ 6746 6072 HCV-35-44 HCV 0.62 13 NEG 159 5913 3 HCV POL YLLPRRGPRL Naive T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*02:01 B2M MHCI -12095 chip0514_59546 -1.7 7.51 Chip3 T1D_7 T1D TGGGGCCGCCGCTTTTGGCGACAGTGACTACACCTTC WGRRFW??cDSDYTF TRBV7-9*01 TRBJ1-2*01 5.0 802.0 _WGRRFW??cDSDYTF 1 8951 PGT-178 PGT 0.9 1480 PGT-178 168 8783 3 HomoSapiens PGT LLAGIGTVPI Naive T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*02:01 B2M MHCI -12096 chip0514_712043 -3.24 12.87 Chip3 T1D_7 T1D TGTGCCGTTGGAGGAGGAGGTGCTGACGGACTCACCTTT CAVGGGGADGLTF TRAV12-2*01 TRAJ45*01 23.0 1468.0 TGTGCCAGCAGCCAAGATACGGCAGGGGGGACTGAAGCTTTCTTT CASSQDTAGGTEAFF TRBV3-1*01 TRBJ1-1*01 31.0 1014.0 CAVGGGGADGLTF_CASSQDTAGGTEAFF 1 4337 MART1-ALA MART1 0.87 269 MART1-ALA 139 4198 1 HomoSapiens MART1 ALAGIGILTV Naive T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*02:01 B2M MHCI -12097 chip0514_320711 -4.16 10.43 Chip3 T1D_7 T1D TGTGCCAGCAGCCGAGAGCGGGGGCCCAGACCGAACGCGCAGTACTTC CASSRERGPRPNAQYF TRBV7-2*01 TRBJ2-7*01 4.0 59.0 _CASSRERGPRPNAQYF 1 5445 PTPRN-180-188 PTPRN 0.93 18 PTPRN-180-188 159 5286 4 HomoSapiens PTPRN LLPPLLEHL Naive T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*02:01 B2M MHCI -12098 chip0514_856897 13.28 9.42 Chip3 T1D_7 T1D TGTGCCAGCAGTCCACAGGGGAGAGGATATGGCTACACCTTC CASSPQGRGYGYTF TRBV6-1*01 TRBJ1-2*01 10.0 484.0 _CASSPQGRGYGYTF 1 6726 EBV-LMP2-FLY EBV 0.97 355 EBV-LMP2-FLY 178 6548 10 EBV LMP2 FLYALALLL effector memory T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*02:01 B2M MHCI -12099 chip0514_758670 6.0 12.47 Chip3 T1D_7 T1D TGTGCCGTGAACGGGGACAACTTCAACAAATTTTACTTT CAVNGDNFNKFYF TRAV12-2*01 TRAJ21*01 18.0 1263.0 TGTGCCACCAGTAGGGCCGGGGAGCTGTTTTTT CATSRAGELFF TRBV24-1*01 TRBJ2-2*01 4.0 246.0 CAVNGDNFNKFYF_CATSRAGELFF 1 6199 MART1-ALA MART1 0.81 269 MART1-ALA 143 6056 7 HomoSapiens MART1 ALAGIGILTV transitional T cells between effector and memory populations PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*02:01 B2M MHCI -12100 chip0514_604713 -4.02 11.87 Chip3 T1D_7 T1D TGTGCCAGCAGTTTAGGAGGGAAAAGCTCCTACGAGCAGTACTTC CASSLGGKSSYEQYF TRBV12-3*01,TRBV12-4*01 TRBJ2-7*01 29.0 1405.0 _CASSLGGKSSYEQYF 1 5303 DUF5119-124-133 DUF5119 0.47 7 NEG 157 5146 1 HomoSapiens DUF5119 MVWGPDPLYV Naive T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*02:01 B2M MHCI -12101 chip0514_234395 -0.29 8.06 Chip3 T1D_7 T1D TGTGCCTTTATGAAGGATAGCAACTATCAGTTAATCTGG CAFMKDSNYQLIW TRAV24*01 TRAJ33*01 22.0 1080.0 TGTGCCAGCAGCTATGGACTCTACAATGAGCAGTTCTTC CASSYGLYNEQFF TRBV7-9*01 TRBJ2-1*01 30.0 2032.0 CAFMKDSNYQLIW_CASSYGLYNEQFF 1 8208 INS-6-16 INS 0.75 20 NEG 147 8061 4 HomoSapiens INS RLLPLLALLAL Naive T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*02:01 B2M MHCI -12102 chip0514_807911 10.42 10.15 Chip3 T1D_7 T1D TGTGCCAGTATTGGTGGGACTATATACAATGAGCAGTTCTTC CASIGGTIYNEQFF TRBV19*01 TRBJ2-1*01 41.0 2324.0 _CASIGGTIYNEQFF 1 6357 EBV-BRLF1 EBV 0.92 1264 EBV-BRLF1 151 6206 9 EBV BRLF1 YVLDHLIVV effector memory T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*02:01 B2M MHCI -12103 chip0514_311490 10.98 7.42 Chip3 T1D_7 T1D TGTGCCGTGAGTTCAGGATACAGCACCCTCACCTTT CAVSSGYSTLTF TRAV8-1*01 TRAJ11*01 15.0 1381.0 TGTGCCAGCAGTTCCCTATCGGGAAGCGGTCAGCCCCAGCATTTT CASSSLSGSGQPQHF TRBV28*01 TRBJ1-5*01 26.0 954.0 CAVSSGYSTLTF_CASSSLSGSGQPQHF 12 5195 EBV-BRLF1 EBV 0.97 1264 EBV-BRLF1 155 5040 10 EBV BRLF1 YVLDHLIVV effector memory T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*02:01 B2M MHCI -12104 chip0514_683493 -5.01 9.32 Chip3 T1D_7 T1D TGTGCCGCTGGCGAAGGATACAGCACCCTCACCTTT CAAGEGYSTLTF TRAV12-2*01 TRAJ11*01 15.0 1304.0 TGTGCCAGTATGACAGGGTCTGAAGCTTTCTTT CASMTGSEAFF TRBV19*01 TRBJ1-1*01 24.0 1464.0 CAAGEGYSTLTF_CASMTGSEAFF 1 5806 MART1-ALA MART1 0.43 269 NEG 152 5654 2 HomoSapiens MART1 ALAGIGILTV Naive T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*02:01 B2M MHCI -12105 chip0514_696851 -0.07 8.19 Chip3 T1D_7 T1D TGTGCAATGAGCGGAGCTAACTTTGGAAATGAGAAATTAACCTTT CAMSGANFGNEKLTF TRAV12-3*01 TRAJ48*01 62.0 2050.0 TGTGCCAGCAGCAAGGACAGGGTGGAATTCGGTGACGACACAGATACGCAGTATTTT CASSKDRVEFGDDTDTQYF TRBV5-5*01 TRBJ2-3*01 16.0 342.0 CAMSGANFGNEKLTF_CASSKDRVEFGDDTDTQYF 1 8508 PGT-178 PGT 0.6 1480 PGT-178 151 8357 4 HomoSapiens PGT LLAGIGTVPI Naive T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*02:01 B2M MHCI -12106 chip0514_840374 10.29 10.27 Chip3 T1D_7 T1D TGTGCCAGCAGTTCCCTATCGGGAAGCGATCAGCCCCAGCATTTT CASSSLSGSDQPQHF TRBV28*01 TRBJ1-5*01 30.0 1209.0 _CASSSLSGSDQPQHF 1 5059 EBV-BRLF1 EBV 1.0 1264 EBV-BRLF1 145 4914 9 EBV BRLF1 YVLDHLIVV effector memory T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*02:01 B2M MHCI -12107 chip0514_101173 8.45 12.04 Chip3 T1D_7 T1D TGTGCCAGCAGTGAGGTGGACCAATACGAGCAGTACTTC CASSEVDQYEQYF TRBV6-1*01 TRBJ2-7*01 41.0 1936.0 _CASSEVDQYEQYF 2 4204 EBV-BRLF1 EBV 0.91 1264 EBV-BRLF1 172 4032 7 EBV BRLF1 YVLDHLIVV transitional T cells between effector and memory populations PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*02:01 B2M MHCI -12108 chip0514_379612 -4.04 10.44 Chip3 T1D_8 T1D TGTGCCGTTGCTGGCCAGAAGCTGCTCTTT CAVAGQKLLF TRAV12-2*01 TRAJ16*01 2.0 94.0 TGTGCCTGGAGTGGGGCGGGGACTTCATACGAGCAGTACTTC CAWSGAGTSYEQYF TRBV30*01 TRBJ2-7*01 5.0 153.0 CAVAGQKLLF_CAWSGAGTSYEQYF 1 3664 MART1-A28L MART1 0.73 84 NEG 144 3520 2 HomoSapiens MART1 ALGIGILTV Naive T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*02:01 B2M MHCI -12109 chip0514_430441 -4.41 9.64 Chip3 T1D_7 T1D TGTGCCAGTAGTTGGACTAGCGGGAGCTCCTACGAGCAGTACTTC CASSWTSGSSYEQYF TRBV19*01 TRBJ2-7*01 9.0 448.0 _CASSWTSGSSYEQYF 1 5161 ZNT8-186-194 ZNT8 0.65 22 NEG 151 5010 4 HomoSapiens ZNT8 VAANIVLTV Naive T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*02:01 B2M MHCI -12110 chip0514_384507 -3.91 10.01 Chip3 T1D_7 T1D TGTGCTTTCATTCACAATAACAATGACATGCGTTTT CAFIHNNNDMRF TRAV38-1*01 TRAJ43*01 4.0 382.0 TGTGCCAGCAGTTCTCCGACTAGCGGAAGACTCCAAGAGACCCAGTACTTC CASSSPTSGRLQETQYF TRBV28*01 TRBJ2-5*01 38.0 1602.0 CAFIHNNNDMRF_CASSSPTSGRLQETQYF 1 4955 HCVNS4B-1807-1816 HCV 0.81 74 HCVNS4B-1807-1816 133 4822 2 HCV NS4B LLFNILGGWV Naive T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*02:01 B2M MHCI -12111 chip0514_432139 -2.14 7.84 Chip3 T1D_7 T1D TGTGCAATGAGCATATCTAACTTTGGAAATGAGAAATTAACCTTT CAMSISNFGNEKLTF TRAV12-3*01 TRAJ48*01 51.0 2404.0 TGTGCCAGCAGCCGGAGCAGAGATACGCAGTATTTT CASSRSRDTQYF TRBV28*01 TRBJ2-3*01 23.0 1347.0 CAMSISNFGNEKLTF_CASSRSRDTQYF 1 6979 PGT-178 PGT 0.9 1480 PGT-178 141 6838 4 HomoSapiens PGT LLAGIGTVPI Naive T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*02:01 B2M MHCI -12112 chip0514_413247 -4.29 9.52 Chip3 T1D_8 T1D _ 6746 5254 MART1-ALA MART1 0.52 269 MART1-ALA 148 5106 2 HomoSapiens MART1 ALAGIGILTV Naive T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*02:01 B2M MHCI -12113 chip0514_544643 12.17 6.6 Chip3 T1D_7 T1D TGTGCTACGGTCGGGCTTTCAGGATACAGCACCCTCACCTTT CATVGLSGYSTLTF TRAV17*01 TRAJ11*01 20.0 931.0 CATVGLSGYSTLTF_ 1 7614 EBV-LMP2-FLY EBV 0.83 355 EBV-LMP2-FLY 158 7456 10 EBV LMP2 FLYALALLL effector memory T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*02:01 B2M MHCI -12114 chip0514_397585 -1.8 7.92 Chip3 T1D_7 T1D TGTGTTGTGACCTTATCAGGAGGAAGCTACATACCTACATTT CVVTLSGGSYIPTF TRAV8-2*01 TRAJ6*01 40.0 2222.0 TGCAGTGCTAATCCCCCAGAGGGCGAGACCCAGTACTTC CSANPPEGETQYF TRBV20-1*01 TRBJ2-5*01 1.0 17.0 CVVTLSGGSYIPTF_CSANPPEGETQYF 1 7031 PGT-178 PGT 1.0 1480 PGT-178 168 6863 4 HomoSapiens PGT LLAGIGTVPI Naive T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*02:01 B2M MHCI -12115 chip0514_619088 -3.15 8.88 Chip3 T1D_8 T1D TGTGCAATGAGCGGATCTAACTTTGGAAATGAGAAATTAACCTTT CAMSGSNFGNEKLTF TRAV12-3*01 TRAJ48*01 2.0 9.0 TGTGCCAGCAGCTTGGGCGGGCCTTACCAAGAGACCCAGTACTTC CASSLGGPYQETQYF TRBV7-8*01 TRBJ2-5*01 6.0 411.0 CAMSGSNFGNEKLTF_CASSLGGPYQETQYF 1 5928 PGT-178 PGT 0.81 1480 NEG 152 5776 2 HomoSapiens PGT LLAGIGTVPI Naive T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*02:01 B2M MHCI -12116 chip0514_129474 -3.57 10.74 Chip3 T1D_7 T1D _ 6746 6534 PGT-178 PGT 1.0 1480 NEG 122 6412 4 HomoSapiens PGT LLAGIGTVPI Naive T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*02:01 B2M MHCI -12117 chip0514_867641 6.86 13.42 Chip3 T1D_7 T1D TGTGGAGCAGACATGGCGGGCAATGCCAGACTCATGTTT CGADMAGNARLMF TRAV34*01 TRAJ31*01 1.0 67.0 TGTGCAGCAAGAGGAGGGGGAGGAAGCCAAGGAAATCTCATCTTT CAARGGGGSQGNLIF TRAV29/DV5*01 TRAJ42*01 1.0 11.0 0.5 CTGTGCCAGTAGTACACGCTCGGCGCAAGAGCAGTACTTC LCQ*YTct??cgAQEQYF TRBV19*01 TRBJ2-7*01 1.0 29.0 CGADMAGNARLMF_LCQ*YTct??cgAQEQYF 1 4768 M1 FLU 0.98 1250 M1 148 4620 7 InfluenzaA M1 GILGFVFTL transitional T cells between effector and memory populations PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*02:01 B2M MHCI -12118 chip0514_473699 -4.07 9.63 Chip3 T1D_7 T1D TGTGCAATGAGCCGATCTAACTTTGGAAATGAGAAATTAACCTTT CAMSRSNFGNEKLTF TRAV12-3*01 TRAJ48*01 2.0 66.0 TGTGCCAGCAGCCATTTAGGGGACAGATCTCATGAAATGAACACTGAAGCTTTCTTT CASSHLGDRSHEMNTEAFF TRBV14*01 TRBJ1-1*01 36.0 1081.0 CAMSRSNFGNEKLTF_CASSHLGDRSHEMNTEAFF 1 5764 PGT-178 PGT 0.97 1480 PGT-178 152 5612 2 HomoSapiens PGT LLAGIGTVPI Naive T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*02:01 B2M MHCI -12119 chip0514_440161 -0.67 9.79 Chip3 T1D_7 T1D TGCATCGTCAGAGTCGCCGGCGAATCATGCCGGCACCCTGCTCACCTTT CIVRVAGE??tHAGTLLTF TRAV26-1*01 TRAJ39*01 8.0 355.0 TGCAGCGCGCGGGACAGGGACACCTACGAGCAGTACTTC CSARDRDTYEQYF TRBV29-1*01 TRBJ2-7*01 173.0 10820.0 CIVRVAGE??tHAGTLLTF_CSARDRDTYEQYF 1 7498 HCVNS3-1073-1081 HCV 0.96 36 HCVNS3-1073-1081 168 7330 3 HCV NS3 CINGVCWTV Naive T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*02:01 B2M MHCI -12120 chip0514_70250 6.43 12.74 Chip3 T1D_7 T1D TGTGCTGTGAACCCTAGCAACACAGGCAAACTAATCTTT CAVNPSNTGKLIF TRAV3*01 TRAJ37*01 18.0 668.0 TGTGCCAGTAGTATCCGAGCGGCGGTAGAGCAGTTCTTC CASSIRAAVEQFF TRBV19*01 TRBJ2-1*01 30.0 1956.0 CAVNPSNTGKLIF_CASSIRAAVEQFF 1 5192 M1 FLU 1.0 1250 M1 159 5033 7 InfluenzaA M1 GILGFVFTL transitional T cells between effector and memory populations PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*02:01 B2M MHCI -12121 chip0514_46435 -4.21 7.99 Chip3 T1D_7 T1D TGTGCTGTCAGATCTTCAGGAACCTACAAATACATCTTT CAVRSSGTYKYIF TRAV41*01 TRAJ40*01 6.0 116.0 TGTGCCATCAGTGAGTCGAACACAGAGCTTCTAGCCAAAAACATTCAGTACTTC CAISESNTELLAKNIQYF TRBV10-3*01 TRBJ2-4*01 56.0 1188.0 CAVRSSGTYKYIF_CAISESNTELLAKNIQYF 1 7856 INS-14-23 INS 0.95 9 INS-14-23 149 7707 2 HomoSapiens INS LALWGPDPAA Naive T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*02:01 B2M MHCI -12122 chip0514_563340 -1.13 9.89 Chip3 T1D_8 T1D TGTGCTCTGAGTGAGGCTAAAGTAGCAGATGCTGGAGGCTTCAAAACTATCTTT CALSEAKVADAGGFKTIF TRAV19*01 TRAJ9*01 40.0 1304.0 CALSEAKVADAGGFKTIF_ 1 5249 ZNT8-173-181 ZNT8 0.78 27 ZNT8-173-181 152 5097 3 HomoSapiens ZNT8 IQATVMIIV Naive T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*02:01 B2M MHCI -12123 chip0514_584130 11.63 7.84 Chip3 T1D_8 T1D TGTGCCGTGAAGGACACCGACAAGCTCATCTTT CAVKDTDKLIF TRAV8-1*01 TRAJ34*01 1.0 16.0 TGCGCCAGCTCCCTCCTAGCGGGGGAGCAGTTCTTC CASSLLAGEQFF TRBV10-1*01 TRBJ2-1*01 2.0 68.0 CAVKDTDKLIF_CASSLLAGEQFF 1 4638 EBV-BRLF1 EBV 0.98 1264 EBV-BRLF1 155 4483 10 EBV BRLF1 YVLDHLIVV effector memory T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*02:01 B2M MHCI -12124 chip0514_687613 -1.74 9.08 Chip3 T1D_8 T1D TGTGCCAGCAGCTCGTCGCGCCCGGGTGGCACCGGGGAGCCGTTTTTT CASSSSRPGGTGEPFF TRBV11-2*01 TRBJ2-2*01 4.0 216.0 _CASSSSRPGGTGEPFF 1 7085 PGT-178 PGT 0.73 1480 NEG 170 6915 3 HomoSapiens PGT LLAGIGTVPI Naive T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*02:01 B2M MHCI -12125 chip0514_299977 4.98 10.63 Chip3 T1D_7 T1D TGTGCTACGGAGGGGAATTCAGGATACAGCACCCTCACCTTT CATEGNSGYSTLTF TRAV17*01 TRAJ11*01 2.0 35.0 TGTGCCAGCAGTTACCAAGGGGGGCGCGGAGGCTACACCTTC CASSYQGGRGGYTF TRBV6-5*01 TRBJ1-2*01 15.0 674.0 CATEGNSGYSTLTF_CASSYQGGRGGYTF 1 4355 EBV-LMP2-FLY EBV 0.76 355 EBV-LMP2-FLY 151 4204 6 EBV LMP2 FLYALALLL central memory T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*02:01 B2M MHCI -12126 chip0514_315761 -3.03 10.71 Chip3 T1D_8 T1D _ 6746 4440 PTPRN-790-798 PTPRN 0.42 6 NEG 161 4279 2 HomoSapiens PTPRN TIADFWQMV Naive T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*02:01 B2M MHCI -12127 chip0514_173132 -2.01 7.6 Chip3 T1D_7 T1D TGTGCCATCAGTGAGTTCCAGACAGACACCTATGGCTACACCTTC CAISEFQTDTYGYTF TRBV10-3*01 TRBJ1-2*01 23.0 923.0 _CAISEFQTDTYGYTF 1 7182 PTPRN-180-188 PTPRN 0.85 18 PTPRN-180-188 143 7039 3 HomoSapiens PTPRN LLPPLLEHL Naive T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*02:01 B2M MHCI -12128 chip0514_51239 -3.99 11.59 Chip3 T1D_7 T1D TGTGCCAGCAGCTTAGCTTCCATTTCGAAAGGCTCCTACAATGAGCAGTTCTTC CASSLASISKGSYNEQFF TRBV11-1*01 TRBJ2-1*01 1.0 28.0 _CASSLASISKGSYNEQFF 1 5226 HCV-35-44 HCV 0.65 13 HCV-35-44 151 5075 1 HCV POL YLLPRRGPRL Naive T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*02:01 B2M MHCI -12129 chip0514_515692 -2.58 11.19 Chip3 T1D_7 T1D TGCAGCGTTGAGGCCCTTGTGGGGACTAGCACAGATACGCAGTATTTT CSVEALVGTSTDTQYF TRBV29-1*01 TRBJ2-3*01 16.0 826.0 _CSVEALVGTSTDTQYF 1 5506 GFAP-214-222 GFAP 0.72 6 NEG 143 5363 3 HomoSapiens GFAP QLARQQVHV Naive T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*02:01 B2M MHCI -12130 chip0514_631153 -1.28 6.92 Chip3 T1D_7 T1D TGTGCAATGACCTTATCTAACTTTGGAAATGAGAAATTAACCTTT CAMTLSNFGNEKLTF TRAV12-3*01 TRAJ48*01 29.0 1016.0 TGTGCTCTGAGTTCGACGCCTCGGAGGTAGCAACTCTAAACTGACATTT CALSSTPR??aGSNSKLTF TRAV9-2*01 TRAJ53*01 38.0 1360.0 0.46 TGTGCCAGCAGTTACGGGAGCCCGGGAAACTTTAACAATGAGCAGTTCTTC CASSYGSPGNFNNEQFF TRBV6-5*01 TRBJ2-1*01 3.0 132.0 CAMTLSNFGNEKLTF_CASSYGSPGNFNNEQFF 1 6333 PGT-178 PGT 0.77 1480 PGT-178 156 6177 3 HomoSapiens PGT LLAGIGTVPI Naive T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*02:01 B2M MHCI -12131 chip0514_122277 -4.25 11.37 Chip3 T1D_7 T1D TGTGCGTCCCGAAGGAACGACTACAAGCTCAGCTTT CASRRNDYKLSF TRAV24*01 TRAJ20*01 8.0 698.0 TGTGCCAGCAGTGGCCAGGCCTACTACGAGCAGTACTTC CASSGQAYYEQYF TRBV2*01 TRBJ2-7*01 1.0 11.0 CASRRNDYKLSF_CASSGQAYYEQYF 1 4926 PREINS-34-42 INS 0.86 9 PREINS-34-42 150 4776 1 HomoSapiens PREINS HLVEALYLV Naive T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*02:01 B2M MHCI -12132 chip0514_25329 -2.69 12.98 Chip3 T1D_7 T1D TGTGCTTCCCCTTCAAGCGGATCTGAAAAGCTGGTCTTT CASPSSGSEKLVF TRAV27*01 TRAJ57*01 16.0 722.0 CASPSSGSEKLVF_ 1 4709 ROTA-VP3 ROTA 0.83 41 ROTA-VP3 168 4541 1 RotavirusA VP3 YLLPGWKL Naive T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*02:01 B2M MHCI -12133 chip0514_667204 -2.52 12.53 Chip3 T1D_7 T1D _ 6746 5394 MART1-ALA MART1 0.73 269 NEG 149 5245 1 HomoSapiens MART1 ALAGIGILTV Naive T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*02:01 B2M MHCI -12134 chip0514_259008 -2.12 12.61 Chip3 T1D_7 T1D TGCAGCGTTTCCCCAGCGGGCAGCTCCTACGAGCAGTACTTC CSVSPAGSSYEQYF TRBV29-1*01 TRBJ2-7*01 1.0 10.0 _CSVSPAGSSYEQYF 1 3615 GP160-311-320 HIV 1.0 109 NEG 134 3481 1 HIV-1 GP160 RGPGRAFVTI Naive T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*02:01 B2M MHCI -12135 chip0514_57828 -2.47 15.14 Chip3 T1D_8 T1D GGTGCAGAGAAGTATATAAAAGTTCTATTTT GAEKY??a*KFYF TRAV13-2*01 TRAJ49*01 14.0 1473.0 TGTGCCAGCAGGATAAGAGAGACCCAGTACTTC CASRIRETQYF TRBV2*01 TRBJ2-5*01 22.0 1163.0 GAEKY??a*KFYF_CASRIRETQYF 1 2367 POL-334-342 HIV 0.94 12 POL-334-342 134 2233 1 HIV-1 POL VIYQYMDDL Naive T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*02:01 B2M MHCI -12136 chip0514_278674 5.52 9.97 Chip3 T1D_7 T1D TGTGCCAGCAGCCTGGGGGGGTTGACCGGGGAGCTGTTTTTT CASSLGGLTGELFF TRBV6-1*01 TRBJ2-2*01 8.0 506.0 _CASSLGGLTGELFF 1 5155 EBV-LMP2A EBV 0.95 700 EBV-LMP2A 138 5017 6 EBV LMP2A CLGGLLTMV central memory T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*02:01 B2M MHCI -12137 chip0514_79438 -0.95 10.32 Chip3 T1D_7 T1D _ 6746 9367 MART1-ALA MART1 0.63 269 MART1-ALA 171 9196 3 HomoSapiens MART1 ALAGIGILTV Naive T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*02:01 B2M MHCI -12138 chip0514_854277 -1.55 8.99 Chip3 T1D_8 T1D TGCAGTGCCCCGGGACAGGGCTTGGGCTACACCTTC CSAPGQGLGYTF TRBV20-1*01 TRBJ1-2*01 14.0 1506.0 _CSAPGQGLGYTF 1 6754 ZNT8-145-153 ZNT8 1.0 14 NEG 143 6611 3 HomoSapiens ZNT8 LLSILCIWV Naive T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*02:01 B2M MHCI -12139 chip0514_130669 9.14 10.61 Chip3 T1D_7 T1D TGTGCCGTGAAGAACACCGACAAGCTCATCTTT CAVKNTDKLIF TRAV8-1*01 TRAJ34*01 1.0 14.0 TGTGCCAGCAGCCAAGATGAGACAGGGTTTTTGGCCGGGGAGCTGTTTTTT CASSQDETGFLAGELFF TRBV14*01 TRBJ2-2*01 4.0 74.0 CAVKNTDKLIF_CASSQDETGFLAGELFF 2 5993 EBV-BRLF1 EBV 1.0 1264 EBV-BRLF1 152 5841 9 EBV BRLF1 YVLDHLIVV effector memory T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*02:01 B2M MHCI -12140 chip0514_807965 -3.51 7.96 Chip3 T1D_7 T1D TGTGCTTATTGGAGTGGCCAGAAGCTGCTCTTT CAYWSGQKLLF TRAV38-1*01 TRAJ16*01 1.0 69.0 TGCGCCAGCACAACCGCACAGGGGTTGAGGACTACGAGCAGTACTTC CASTTAQgg?VEDYEQYF TRBV4-3*01 TRBJ2-7*01 64.0 2844.0 CAYWSGQKLLF_CASTTAQgg?VEDYEQYF 1 7269 HCVNS3-1406-1415 HCV 0.58 12 NEG 134 7135 2 HCV NS3 KLVALGINAV Naive T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*02:01 B2M MHCI -12141 chip0514_780235 -0.2 8.9 Chip3 T1D_7 T1D TGTGCAGCAAGTTTTAATAATGCAGGCAACATGCTCCCCTTT CAASFNNAGNMLPF TRAV29/DV5*01 TRAJ39*01 20.0 1136.0 CAASFNNAGNMLPF_ 1 7198 PGT-178 PGT 0.96 1480 PGT-178 150 7048 4 HomoSapiens PGT LLAGIGTVPI Naive T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*02:01 B2M MHCI -12142 chip0514_740112 -0.94 10.2 Chip3 T1D_7 T1D TGTGCCAGCAGCCAAGAGGGCAGGGAGACCGGGGAGCTGTTTTTT CASSQEGRETGELFF TRBV14*01 TRBJ2-2*01 7.0 324.0 _CASSQEGRETGELFF 1 5529 PGT-178 PGT 0.79 1480 PGT-178 161 5368 3 HomoSapiens PGT LLAGIGTVPI Naive T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*02:01 B2M MHCI -12143 chip0514_403568 -4.1 10.91 Chip3 T1D_7 T1D TGTGCAATGAGCCGTTCTAACTTTGGAAATGAGAAATTAACCTTT CAMSRSNFGNEKLTF TRAV12-3*01 TRAJ48*01 12.0 256.0 CAMSRSNFGNEKLTF_ 5 6640 PGT-178 PGT 0.88 1480 PGT-178 142 6498 1 HomoSapiens PGT LLAGIGTVPI Naive T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*02:01 B2M MHCI -12144 chip0514_6130 -4.07 11.49 Chip3 T1D_7 T1D TGTGCTGTGACAACTGACAGCTGGGGGAAATTGCAGTTT CAVTTDSWGKLQF TRAV2*01 TRAJ24*01 2.0 37.0 TGTGCCAAGAGGGACACAGATACGCAGTATTTT CAKRDTDTQYF TRBV2*01 TRBJ2-3*01 28.0 1601.0 CAVTTDSWGKLQF_CAKRDTDTQYF 1 5613 MART1-ALA MART1 0.79 269 MART1-ALA 129 5484 1 HomoSapiens MART1 ALAGIGILTV Naive T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*02:01 B2M MHCI -12145 chip0514_103835 -1.08 9.88 Chip3 T1D_7 T1D TGCGCCGTGACCCCTTGGGCAGGCAACATGCTCACCTTT CAVTPWAGNMLTF TRAV12-2*01 TRAJ39*01 23.0 2300.0 TGTGCCAGCAGTTTAGGGTCCCTGGGTGAAGAGCAGTACTTC CASSLGSLGEEQYF TRBV12-3*01,TRBV12-4*01 TRBJ2-7*01 15.0 531.0 CAVTPWAGNMLTF_CASSLGSLGEEQYF 1 7758 GAG-433-442 HIV 0.92 19 GAG-433-442 142 7616 3 HIV-1 GAG FLGKIWPSYK Naive T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*02:01 B2M MHCI -12146 chip0514_458484 -2.92 13.66 Chip3 T1D_7 T1D _ 6746 3910 PGT-178 PGT 0.87 1480 PGT-178 139 3771 1 HomoSapiens PGT LLAGIGTVPI Naive T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*02:01 B2M MHCI -12147 chip0514_712606 -4.28 9.32 Chip3 T1D_7 T1D TGTGCCGTGGATAGCAACTATCAGTTAATCTGG CAVDSNYQLIW TRAV39*01 TRAJ33*01 9.0 418.0 TGCAGTGCTACGGACAGCTACGAGCAGTACTTC CSATDSYEQYF TRBV20-1*01 TRBJ2-7*01 18.0 1110.0 CAVDSNYQLIW_CSATDSYEQYF 1 6479 GP160-311-320 HIV 0.83 109 GP160-311-320 141 6338 2 HIV-1 GP160 RGPGRAFVTI Naive T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*02:01 B2M MHCI -12148 chip0514_440925 -2.58 14.3 Chip3 T1D_7 T1D TGTGCCAGCAGCACTGGTGCGGGGACAGGCACCTACGAGCAGTACTTC CASSTGAGTGTYEQYF TRBV7-9*01 TRBJ2-7*01 1.0 27.0 _CASSTGAGTGTYEQYF 1 3745 PGT-178 PGT 0.71 1480 NEG 128 3617 1 HomoSapiens PGT LLAGIGTVPI Naive T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*02:01 B2M MHCI -12149 chip0514_768892 5.99 12.48 Chip3 T1D_8 T1D TGTGCCGTTCAAGGAAGCCAAGGAAATCTCATCTTT CAVQGSQGNLIF TRAV12-2*01 TRAJ42*01 18.0 1578.0 TGTGCCAGTAGTATACGAAGCTCCTACGAGCAGTACTTC CASSIRSSYEQYF TRBV19*01 TRBJ2-7*01 2.0 122.0 CAVQGSQGNLIF_CASSIRSSYEQYF 1 7114 M1 FLU 0.94 1250 M1 149 6965 7 InfluenzaA M1 GILGFVFTL transitional T cells between effector and memory populations PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*02:01 B2M MHCI -12150 chip0514_501795 12.55 6.97 Chip3 T1D_7 T1D TGTGCCAGCAGTCGACAGGTCCACGAGCAGTACTTC CASSRQVHEQYF TRBV7-7*01 TRBJ2-7*01 27.0 1788.0 _CASSRQVHEQYF 1 4684 EBV-BRLF1 EBV 0.91 1264 EBV-BRLF1 149 4535 10 EBV BRLF1 YVLDHLIVV effector memory T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*02:01 B2M MHCI -12151 chip0514_822121 12.85 6.95 Chip3 T1D_7 T1D TGTGCCGTGAGTTCAGGATACAGCACCCTCACCTTT CAVSSGYSTLTF TRAV8-1*01 TRAJ11*01 3.0 191.0 TGTGCCAGCAGTTCCCTATCGGGAAGCGGTCAGCCCCAGCATTTT CASSSLSGSGQPQHF TRBV28*01 TRBJ1-5*01 42.0 1739.0 CAVSSGYSTLTF_CASSSLSGSGQPQHF 12 5087 EBV-BRLF1 EBV 0.94 1264 EBV-BRLF1 171 4916 10 EBV BRLF1 YVLDHLIVV effector memory T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*02:01 B2M MHCI -12152 chip0514_761248 11.51 11.41 Chip3 T1D_7 T1D TGTGCCAGCAGTTCCCTATCGGGAAGCGGTCAGCCCCAGCATTTT CASSSLSGSGQPQHF TRBV28*01 TRBJ1-5*01 12.0 429.0 _CASSSLSGSGQPQHF 23 4206 EBV-BRLF1 EBV 0.99 1264 EBV-BRLF1 146 4060 9 EBV BRLF1 YVLDHLIVV effector memory T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*02:01 B2M MHCI -12153 chip0514_145482 -3.95 8.5 Chip3 T1D_7 T1D TGTGCAGGGCAAATATCTAACTTTGGAAATGAGAAATTAACCTTT CAGQISNFGNEKLTF TRAV12-3*01 TRAJ48*01 34.0 934.0 TGTGCCAGCAGCCCTCCTCAGGGGTCAAGCTCCTACAATGAGCAGTTCTTC CASSPPQGSSSYNEQFF TRBV12-3*01,TRBV12-4*01 TRBJ2-1*01 1.0 71.0 CAGQISNFGNEKLTF_CASSPPQGSSSYNEQFF 1 6591 PGT-178 PGT 0.87 1480 PGT-178 135 6456 2 HomoSapiens PGT LLAGIGTVPI Naive T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*02:01 B2M MHCI -12154 chip0514_161048 5.44 12.62 Chip3 T1D_7 T1D TGTGCTGTGAGTTCCCATACCGGCACTGCCAGTAAACTCACCTTT CAVSSHTGTASKLTF TRAV8-4*01 TRAJ44*01 59.0 2974.0 TGTGCCAGTAGTATCAGGGCCTCCTACGAGCAGTACTTC CASSIRASYEQYF TRBV19*01 TRBJ2-7*01 10.0 542.0 CAVSSHTGTASKLTF_CASSIRASYEQYF 1 5853 M1 FLU 0.88 1250 M1 172 5681 7 InfluenzaA M1 GILGFVFTL transitional T cells between effector and memory populations PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*02:01 B2M MHCI -12155 chip0514_315640 -2.12 7.64 Chip3 T1D_7 T1D _ 6746 5749 PGT-178 PGT 0.91 1480 PGT-178 144 5605 4 HomoSapiens PGT LLAGIGTVPI Naive T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*02:01 B2M MHCI -12156 chip0514_751336 10.59 10.4 Chip3 T1D_7 T1D TGTGCAGCAAGCGGAGGTAGCAACTATAAACTGACATTT CAASGGSNYKLTF TRAV29/DV5*01 TRAJ53*01 11.0 360.0 TGTGCCAGCAGTTCCTTTCACATACAGGGGGGCTACGAGCAGTACTTC CASSSFHIQGGYEQYF TRBV28*01 TRBJ2-7*01 14.0 435.0 CAASGGSNYKLTF_CASSSFHIQGGYEQYF 1 5184 IGRP-265-273 IGRP 0.68 34 IGRP-265-273 162 5022 9 HomoSapiens IGRP VLFGLGFAI effector memory T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*02:01 B2M MHCI -12157 chip0514_166713 -3.58 12.4 Chip3 T1D_7 T1D TGTGCAATGAGTATCTCTAACTTTGGAAATGAGAAATTAACCTTT CAMSISNFGNEKLTF TRAV12-3*01 TRAJ48*01 12.0 384.0 TGTGCCAGCAGTCTCCAGACAGGGAGAGGTGAAAAACTGTTTTTT CASSLQTGRGEKLFF TRBV28*01 TRBJ1-4*01 31.0 1049.0 CAMSISNFGNEKLTF_CASSLQTGRGEKLFF 1 5419 PGT-178 PGT 0.87 1480 PGT-178 131 5288 1 HomoSapiens PGT LLAGIGTVPI Naive T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*02:01 B2M MHCI -12158 chip0514_329188 -4.12 12.43 Chip3 T1D_7 T1D TGTGCAATGAGCGCGGGGAACTTTGGAAATGAGAAATTAACCTTT CAMSAGNFGNEKLTF TRAV12-3*01 TRAJ48*01 25.0 1028.0 CAMSAGNFGNEKLTF_ 1 6702 PGT-178 PGT 0.89 1480 PGT-178 151 6551 1 HomoSapiens PGT LLAGIGTVPI Naive T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*02:01 B2M MHCI -12159 chip0514_209939 11.9 13.28 Chip3 T1D_7 T1D TGTGCCGTGAAGGACACCGACAAGCTCATCTTT CAVKDTDKLIF TRAV8-1*01 TRAJ34*01 11.0 794.0 TGTGCCAGCAGTGTTTACTACGAGCAGTACTTC CASSVYYEQYF TRBV6-1*01 TRBJ2-7*01 9.0 461.0 CAVKDTDKLIF_CASSVYYEQYF 1 2635 EBV-BRLF1 EBV 0.95 1264 EBV-BRLF1 171 2464 11 EBV BRLF1 YVLDHLIVV effector T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*02:01 B2M MHCI -12160 chip0514_133469 -4.51 9.11 Chip3 T1D_7 T1D TGTGCCATGACCCCAGGGGCAGGCAACATGCTCACCTTT CAMTPGAGNMLTF TRAV12-3*01 TRAJ39*01 1.0 17.0 TGTGCCAGCCCCCCTCTGCAGGAAGGAGGAGCTGGGGCCAACGTCCTGACTTTC CASPPLQEGGAGANVLTF TRBV2*01 TRBJ2-6*01 29.0 1229.0 CAMTPGAGNMLTF_CASPPLQEGGAGANVLTF 1 5484 PGT-178 PGT 0.88 1480 PGT-178 132 5352 2 HomoSapiens PGT LLAGIGTVPI Naive T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*02:01 B2M MHCI -12161 chip0514_741476 -4.19 9.1 Chip3 T1D_7 T1D TGTGCTCTGACCCCATTATGGAGGAAGCCAAGGAAATCTCATCTTT CALTPLWag??gaSQGNLIF TRAV9-2*01 TRAJ42*01 3.0 153.0 CALTPLWag??gaSQGNLIF_ 1 5709 ZNT8-186-194 ZNT8 0.62 22 ZNT8-186-194 152 5557 2 HomoSapiens ZNT8 VAANIVLTV Naive T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*02:01 B2M MHCI -12162 chip0514_701209 8.78 10.04 Chip3 T1D_7 T1D TGTGCCACCAGTGGCTGGCAGGGTTCGGAAGAGACCCAGTACTTC CATSGWQGSEETQYF TRBV24-1*01 TRBJ2-5*01 8.0 376.0 _CATSGWQGSEETQYF 6 6476 EBV-BRLF1 EBV 0.89 1264 EBV-BRLF1 159 6317 8 EBV BRLF1 YVLDHLIVV effector memory T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*02:01 B2M MHCI -12163 chip0514_810289 15.22 9.76 Chip3 T1D_8 T1D TGCAGTGCTAGAGATCGTGTGGGGAATGGCTACACCTTC CSARDRVGNGYTF TRBV20-1*01 TRBJ1-2*01 1.0 46.0 _CSARDRVGNGYTF 6 3897 EBV-BLMF1 EBV 0.92 2531 EBV-BLMF1 157 3740 12 EBV BLMF1 GLCTLVAML effector T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*02:01 B2M MHCI -12164 chip0514_788452 -3.3 12.61 Chip3 T1D_8 T1D TGTGCTGTGGACCCCTCAGGAACCTACAAATACATCTTT CAVDPSGTYKYIF TRAV8-3*01 TRAJ40*01 9.0 337.0 TGTGCCAGCAGCTATACAGGCACCGGGGAGCTGTTTTTT CASSYTGTGELFF TRBV7-7*01 TRBJ2-2*01 24.0 1071.0 CAVDPSGTYKYIF_CASSYTGTGELFF 1 4067 PREINS-2-10 INS 1.0 37 NEG 148 3919 1 HomoSapiens PREINS ALWMRLLPL Naive T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*02:01 B2M MHCI -12165 chip0514_335768 11.64 12.47 Chip3 T1D_7 T1D _ 6746 3686 EBV-BRLF1 EBV 0.96 1264 EBV-BRLF1 175 3511 11 EBV BRLF1 YVLDHLIVV effector T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*02:01 B2M MHCI -12166 chip0514_235170 -4.04 8.53 Chip3 T1D_7 T1D TGTGCTGCGAGAGAGGACACCGACTACAAGCTCAGCTTT CAAREDTDYKLSF TRAV1-2*01 TRAJ20*01 13.0 624.0 CAAREDTDYKLSF_ 1 6376 ADH-79-88 ADH 0.58 15 NEG 150 6226 2 HomoSapiens ADH RQFGPDWIVA Naive T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*02:01 B2M MHCI -12167 chip0514_883600 14.83 8.81 Chip3 T1D_8 T1D TGTGCTCCAGACATCTGGGGCTGGGAGTTACCAACTCACTTTC CAPDIWG??tGSYQLTF TRAV19*01 TRAJ28*01 3.0 217.0 CAPDIWG??tGSYQLTF_ 1 2166 EBV-BLMF1 EBV 0.95 2531 EBV-BLMF1 186 1980 12 EBV BLMF1 GLCTLVAML effector T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*02:01 B2M MHCI -12168 chip0514_807846 14.31 7.95 Chip3 T1D_8 T1D TGTGCAGAGAGTAGCGGGGCCTCCGGCAAACTAATCTTT CAESSGASGKLIF TRAV5*01 TRAJ37*01 16.0 1264.0 TGCAGCGTGGGGACAGGGGGCACTAACGAAAAACTGTTTTTT CSVGTGGTNEKLFF TRBV29-1*01 TRBJ1-4*01 4.0 237.0 CAESSGASGKLIF_CSVGTGGTNEKLFF 7 3700 EBV-BLMF1 EBV 0.94 2531 EBV-BLMF1 140 3560 10 EBV BLMF1 GLCTLVAML effector memory T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*02:01 B2M MHCI -12169 chip0514_16007 -1.89 7.67 Chip3 T1D_7 T1D TGTGCCAGCAGCCCAAACTCATTGTACGAGCAGTACTTC CASSPNSLYEQYF TRBV7-8*01 TRBJ2-7*01 23.0 789.0 _CASSPNSLYEQYF 1 7533 GP160-311-320 HIV 0.83 109 GP160-311-320 157 7376 4 HIV-1 GP160 RGPGRAFVTI Naive T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*02:01 B2M MHCI -12170 chip0514_748648 -4.19 8.18 Chip3 T1D_7 T1D TGTGCTACGGACGCGTATTCAGGAAACACACCTCTTGTCTTT CATDAYSGNTPLVF TRAV17*01 TRAJ29*01 9.0 407.0 TGTGCCAGCAGCAACAGACAGGGGGATACCGGGGAGCTGTTTTTT CASSNRQGDTGELFF TRBV7-9*01 TRBJ2-2*01 39.0 1638.0 CATDAYSGNTPLVF_CASSNRQGDTGELFF 1 6081 ZNT8-173-181 ZNT8 0.9 27 ZNT8-173-181 165 5916 2 HomoSapiens ZNT8 IQATVMIIV Naive T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*02:01 B2M MHCI -12171 chip0514_780542 5.42 8.76 Chip3 T1D_8 T1D TGTGCTACGACCGGGAATTCAGGATACAGCACCCTCACCTTT CATTGNSGYSTLTF TRAV17*01 TRAJ11*01 28.0 973.0 TGTGCCAGCAGTTACCAGGGGGGGAATGAGCAGTTCTTC CASSYQGGNEQFF TRBV6-5*01 TRBJ2-1*01 2.0 78.0 CATTGNSGYSTLTF_CASSYQGGNEQFF 1 4873 EBV-LMP2-FLY EBV 1.0 355 EBV-LMP2-FLY 132 4741 6 EBV LMP2 FLYALALLL central memory T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*02:01 B2M MHCI -12172 chip0514_336194 6.63 14.5 Chip3 T1D_8 T1D TGTTCGGTCGGTGGGAGCCAAGGAAATCTCATCTTT CSVGGSQGNLIF TRAV27*01 TRAJ42*01 1.0 74.0 TGTGCCAGTAGTATTCGCAGTTCCTACGAGCAGTACTTC CASSIRSSYEQYF TRBV19*01 TRBJ2-7*01 11.0 825.0 CSVGGSQGNLIF_CASSIRSSYEQYF 1 3637 M1 FLU 0.96 1250 M1 156 3481 7 InfluenzaA M1 GILGFVFTL transitional T cells between effector and memory populations PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*02:01 B2M MHCI -12173 chip0514_247198 -3.32 13.77 Chip3 T1D_7 T1D TGCAGTGCTAGTACGGCAGGGGGCGCGTCTGGGGCCAACGTCCTGACTTTC CSASTAGGASGANVLTF TRBV20-1*01 TRBJ2-6*01 12.0 783.0 _CSASTAGGASGANVLTF 1 4120 PGT-178 PGT 0.89 1480 PGT-178 154 3966 1 HomoSapiens PGT LLAGIGTVPI Naive T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*02:01 B2M MHCI -12174 chip0514_108972 10.31 11.38 Chip3 T1D_7 T1D TGTGCAATGAGAGAGGGCAACTGGAGCCAATAGTAAGCTGACATTT CAMREGNtg??gaANSKLTF TRAV14/DV4*01 TRAJ56*01 2.0 42.0 TGCAGTGCGACAAAGACAGATAACTATGGCTACACCTTC CSATKTDNYGYTF TRBV20-1*01 TRBJ1-2*01 14.0 694.0 CAMREGNtg??gaANSKLTF_CSATKTDNYGYTF 1 4371 EBV-BRLF1 EBV 0.92 1264 NEG 142 4229 9 EBV BRLF1 YVLDHLIVV effector memory T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*02:01 B2M MHCI -12175 chip0514_118928 5.6 9.04 Chip3 T1D_7 T1D TGTGTGGTGAACGTTTTATGAACAGAGATGACAAGATCATCTTT CVVNVL*a?cRDDKIIF TRAV12-1*01 TRAJ30*01 1.0 30.0 TGTGCCAGCAGTCGACAGGGAGGATCTAACTATGGCTACACCTTC CASSRQGGSNYGYTF TRBV6-1*01 TRBJ1-2*01 14.0 378.0 CVVNVL*a?cRDDKIIF_CASSRQGGSNYGYTF 1 7001 EBV-LMP2-FLY EBV 0.94 355 EBV-LMP2-FLY 151 6850 6 EBV LMP2 FLYALALLL central memory T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*02:01 B2M MHCI -12176 chip0514_200242 -2.34 9.42 Chip3 T1D_7 T1D TGTGCCTCGGAGAATTATGGAGGAAGCCAAGGAAATCTCATCTTT CASENYGGSQGNLIF TRAV12-2*01 TRAJ42*01 52.0 2093.0 CASENYGGSQGNLIF_ 1 6881 MART1-A28L MART1 0.97 84 MART1-A28L 138 6743 3 HomoSapiens MART1 ALGIGILTV Naive T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*02:01 B2M MHCI -12177 chip0514_109783 -2.23 9.2 Chip3 T1D_8 T1D TGTGCCGAGGTAGGAAGCTACATACCTACATTT CAEVGSYIPTF TRAV12-1*01 TRAJ6*01 7.0 415.0 TGTGCCCCCAGTCATGACAAGGAAGGTGCCGCCGGGGAGCTGTTTTTT CAPSHDKEGAAGELFF TRBV24-1*01 TRBJ2-2*01 5.0 112.0 CAEVGSYIPTF_CAPSHDKEGAAGELFF 1 6287 ZNT8-115-123 ZNT8 0.9 74 ZNT8-115-123 143 6144 3 HomoSapiens ZNT8 LLSLFSLWL Naive T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*02:01 B2M MHCI -12178 chip0514_804156 8.04 8.82 Chip3 T1D_7 T1D TGTGCCGTGAACGGCACCGACAAGCTCATCTTT CAVNGTDKLIF TRAV8-1*01 TRAJ34*01 1.0 102.0 TGTGCCAGCAGTTTATCGGTTAGCGAATTCTACAATGAGCAGTTCTTC CASSLSVSEFYNEQFF TRBV27*01 TRBJ2-1*01 1.0 13.0 CAVNGTDKLIF_CASSLSVSEFYNEQFF 1 9292 EBV-BRLF1 EBV 0.48 1264 EBV-BRLF1 132 9160 8 EBV BRLF1 YVLDHLIVV effector memory T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*02:01 B2M MHCI -12179 chip0514_720021 6.96 12.66 Chip3 T1D_7 T1D TGTGCCGTGAATGGGGGTGGAGGAAGCCAAGGAAATCTCATCTTT CAVNGGGGSQGNLIF TRAV12-2*01 TRAJ42*01 20.0 445.0 TGTGCCAGCAGTTCAGCGGACAGTCTCTACGAGCAGTACTTC CASSSADSLYEQYF TRBV12-3*01,TRBV12-4*01 TRBJ2-7*01 1.0 16.0 CAVNGGGGSQGNLIF_CASSSADSLYEQYF 1 5159 M1 FLU 0.97 1250 M1 146 5013 7 InfluenzaA M1 GILGFVFTL transitional T cells between effector and memory populations PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*02:01 B2M MHCI -12180 chip0514_494323 13.31 12.85 Chip3 T1D_7 T1D TGCAGTGCTACAGACAGTACCTACAATGAGCAGTTCTTC CSATDSTYNEQFF TRBV20-1*01 TRBJ2-1*01 21.0 1606.0 _CSATDSTYNEQFF 6 2864 EBV-BRLF1 EBV 0.95 1264 EBV-BRLF1 148 2716 11 EBV BRLF1 YVLDHLIVV effector T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*02:01 B2M MHCI -12181 chip0514_604303 -4.79 9.16 Chip3 T1D_7 T1D TGTGTGGTGCGCAACCCAGGAGGCTTCAAAACTATCTTT CVVRNPGGFKTIF TRAV12-1*01 TRAJ9*01 6.0 246.0 TGTGCCAGCAGCTCAGAAGGGGGAGTGGGACGCAATGAGCAGTTCTTC CASSSEGGVGRNEQFF TRBV13*01 TRBJ2-1*01 30.0 1402.0 CVVRNPGGFKTIF_CASSSEGGVGRNEQFF 1 7206 PA-46-54 FLU 0.93 18 PA-46-54 141 7065 2 InfluenzaA PA FMYSDFHFI Naive T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*02:01 B2M MHCI -12182 chip0514_289198 -2.41 12.53 Chip3 T1D_7 T1D TGTGCTTTCATGACCAACAATGACATGCGCTTT CAFMTNNDMRF TRAV38-1*01 TRAJ43*01 1.0 168.0 CAFMTNNDMRF_ 1 5450 HCV-A9N HCV 0.9 5 HCV-A9N 156 5294 1 HCV POL KLVALGINNV Naive T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*02:01 B2M MHCI -12183 chip0514_20232 7.06 10.38 Chip3 T1D_7 T1D TGTGCCAGCAGTTTTTTTAGCGGGAGTATAGAGACCCAGTACTTC CASSFFSGSIETQYF TRBV28*01 TRBJ2-5*01 29.0 1009.0 _CASSFFSGSIETQYF 1 7898 MART1-A28L MART1 0.58 84 NEG 167 7731 7 HomoSapiens MART1 ALGIGILTV transitional T cells between effector and memory populations PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*02:01 B2M MHCI -12184 chip0514_2747 -1.28 8.84 Chip3 T1D_7 T1D TGCCTCGTGGGTGACATTGAGCGGTTCTGCAAGGCAACTGACCTTT CLVGDIEcg??gtSARQLTF TRAV4*01 TRAJ22*01 17.0 554.0 TGTGCCAGCAGTTCCTCACAGGGGGCCGGGGAGCTGTTTTTT CASSSSQGAGELFF TRBV27*01 TRBJ2-2*01 68.0 3925.0 CLVGDIEcg??gtSARQLTF_CASSSSQGAGELFF 1 8224 M1 FLU 0.92 1250 M1 141 8083 4 InfluenzaA M1 GILGFVFTL Naive T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*02:01 B2M MHCI -12185 chip0514_707938 -2.13 10.19 Chip3 T1D_8 T1D TGTGCAATGAGTCTATCTAACTTTGGAAATGAGAAATTAACCTTT CAMSLSNFGNEKLTF TRAV12-3*01 TRAJ48*01,TRAJ44*01 2.0 40.0 TGTGCCAGCAGCCTGGCCTGGCAGGGGGCTAGAGATGAGCAGTTCTTC CASSLAWQGARDEQFF TRBV5-5*01 TRBJ2-1*01 26.0 1122.0 CAMSLSNFGNEKLTF_CASSLAWQGARDEQFF 1 5413 PGT-178 PGT 0.95 1480 PGT-178 164 5249 3 HomoSapiens PGT LLAGIGTVPI Naive T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*02:01 B2M MHCI -12186 chip0514_558305 -3.2 8.97 Chip3 T1D_7 T1D AATGCTGGCAACAACCGTAAGCTGATTTGG NAGNNRKLIW TRAV27*01 TRAJ38*01 10.0 1323.0 NAGNNRKLIW_ 1 7494 GAD65-141-149 GAD65 0.86 9 GAD65-141-149 149 7345 2 HomoSapiens GAD65 LLQEYNWEL Naive T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*02:01 B2M MHCI -12187 chip0514_15322 12.66 10.56 Chip3 T1D_7 T1D TGTGCCGTGAAAGACACCGACAAGCTCATCTTT CAVKDTDKLIF TRAV8-1*01 TRAJ34*01 1.0 25.0 CAVKDTDKLIF_ 56 4606 EBV-BRLF1 EBV 0.98 1264 EBV-BRLF1 162 4444 9 EBV BRLF1 YVLDHLIVV effector memory T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*02:01 B2M MHCI -12188 chip0514_114695 -1.93 9.27 Chip3 T1D_7 T1D TGTGCCGTTGCCAATGCCAGACTCATGTTT CAVANARLMF TRAV12-2*01 TRAJ31*01 3.0 66.0 TGTGCCAGCCGGGGGGCTAGAGGTATGGCCGGGGAGCTGTTTTTT CASRGARGMAGELFF TRBV28*01 TRBJ2-2*01 8.0 365.0 CAVANARLMF_CASRGARGMAGELFF 1 6708 PGT-178 PGT 0.45 1480 PGT-178 155 6553 3 HomoSapiens PGT LLAGIGTVPI Naive T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*02:01 B2M MHCI -12189 chip0514_515788 -4.3 10.42 Chip3 T1D_7 T1D CGTGGAGCAGACATTAGGCCAATGCAGGCGAATCATCCGTA RGADIRcc?NAGESSV TRAV34*01 TRAJ27*01 2.0 92.0 TGCGCCAGCAGCCAAAACATAGCGGGAGGGCCACCAGATACGCAGTATCTT CASSQNIAGGPPDTQYL TRBV4-3*01 TRBJ2-3*01 11.0 304.0 RGADIRcc?NAGESSV_CASSQNIAGGPPDTQYL 1 6868 PGT-178 PGT 0.73 1480 PGT-178 159 6709 2 HomoSapiens PGT LLAGIGTVPI Naive T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*02:01 B2M MHCI -12190 chip0514_715540 5.79 9.69 Chip3 T1D_7 T1D TGTGTGGTGCCCCGGGGGGGAGGAAGCTACATACCTACATTT CVVPRGGGSYIPTF TRAV12-1*01 TRAJ6*01 33.0 1896.0 CVVPRGGGSYIPTF_ 1 7455 EBV-LMP1-2 EBV 0.95 41 EBV-LMP1-2 132 7323 6 EBV LMP1 YLQQNWWTL central memory T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*02:01 B2M MHCI -12191 chip0514_491117 5.3 9.79 Chip3 T1D_7 T1D _ 6746 4884 EBV-LMP2-FLY EBV 0.94 355 EBV-LMP2-FLY 146 4738 6 EBV LMP2 FLYALALLL central memory T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*02:01 B2M MHCI -12192 chip0514_769421 11.7 8.55 Chip3 T1D_7 T1D _ 6746 5262 EBV-BRLF1 EBV 0.94 1264 EBV-BRLF1 149 5113 10 EBV BRLF1 YVLDHLIVV effector memory T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*02:01 B2M MHCI -12193 chip0514_635504 -3.86 10.9 Chip3 T1D_7 T1D TGTGCCAGCAGTGAAGTGGGGACAGGGTCCCACGAGCAGTACTTC CASSEVGTGSHEQYF TRBV2*01 TRBJ2-7*01 34.0 1641.0 _CASSEVGTGSHEQYF 1 5247 PGT-178 PGT 1.0 1480 NEG 146 5101 4 HomoSapiens PGT LLAGIGTVPI Naive T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*02:01 B2M MHCI -12194 chip0514_242549 -4.14 11.33 Chip3 T1D_8 T1D TGTGCAGAGAGTGGGTCTAACGACTACAAGCTCAGCTTT CAESGSNDYKLSF TRAV5*01 TRAJ20*01 1.0 30.0 CAESGSNDYKLSF_ 1 4347 GAD65-114-123 GAD65 0.71 5 NEG 152 4195 1 HomoSapiens GAD65 VMNILLQYVV Naive T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*02:01 B2M MHCI -12195 chip0514_256965 -1.19 7.27 Chip3 T1D_7 T1D TGTGCTGTAACCGACTTTTCAGGAAACACACCTCTTGTCTTT CAVTDFSGNTPLVF TRAV41*01 TRAJ29*01 28.0 994.0 TGTGCTCTGAGTGAGGCGCCACCAGGGCTGGCGGACTCACCTTT CALSEAPc?cRAGGLTF TRAV19*01 TRAJ45*01 21.0 795.0 0.36 TGTGCCAGCAGTGGCCAGGCCTACCACGAGCAGTACTTC CASSGQAYHEQYF TRBV2*01 TRBJ2-7*01 11.0 726.0 CAVTDFSGNTPLVF_CASSGQAYHEQYF 1 7782 GAD65-114-122 GAD65 0.94 63 GAD65-114-122 134 7648 3 HomoSapiens GAD65 VMNILLQYV Naive T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*02:01 B2M MHCI -12196 chip0514_200687 -3.11 8.65 Chip3 T1D_7 T1D TGCGCCTTCGATAGCAACTATCAGTTAATCTGG CAFDSNYQLIW TRAV38-1*01 TRAJ33*01 2.0 88.0 TGTGCCAGCAGTTTCAGACTAGCGGGAGGCCTTAGCACAGATACGCAGTATTTT CASSFRLAGGLSTDTQYF TRBV12-3*01,TRBV12-4*01 TRBJ2-3*01 18.0 915.0 CAFDSNYQLIW_CASSFRLAGGLSTDTQYF 1 6603 GP160-311-320 HIV 0.85 109 GP160-311-320 118 6485 2 HIV-1 GP160 RGPGRAFVTI Naive T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*02:01 B2M MHCI -12197 chip0514_786768 -1.8 8.85 Chip3 T1D_7 T1D TGTGCCAGCAGCTTCGGGACTAGCTACGAGCAGTACTTC CASSFGTSYEQYF TRBV7-9*01 TRBJ2-7*01 19.0 922.0 _CASSFGTSYEQYF 1 7059 MART1-A28L MART1 0.83 84 MART1-A28L 149 6910 3 HomoSapiens MART1 ALGIGILTV Naive T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*02:01 B2M MHCI -12198 chip0514_254777 6.21 12.68 Chip3 T1D_8 T1D TGTGCCGGCGCCGGAGGGGGGGGGAGCGGAGGAAATCTCATCTTT CAGAGGGGSGGNLIF TRAV27*01 TRAJ42*01 4.0 118.0 TGTGCCAGTAGTTCCCGGGCATCCTACGAGCAGTACTTC CASSSRASYEQYF TRBV19*01 TRBJ2-7*01 32.0 1650.0 CAGAGGGGSGGNLIF_CASSSRASYEQYF 1 5789 M1 FLU 0.92 1250 M1 156 5633 7 InfluenzaA M1 GILGFVFTL transitional T cells between effector and memory populations PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*02:01 B2M MHCI -12199 chip0514_495625 -4.05 9.58 Chip3 T1D_7 T1D TGTGCCGTGACTAGCTATGGAAAGCTGACATTT CAVTSYGKLTF TRAV12-2*01 TRAJ52*01 3.0 188.0 CAVTSYGKLTF_ 1 6232 PGT-178 PGT 0.87 1480 PGT-178 146 6086 2 HomoSapiens PGT LLAGIGTVPI Naive T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*02:01 B2M MHCI -12200 chip0514_380905 -3.82 8.65 Chip3 T1D_7 T1D TGTGCAATGAGCGCGTCTAACTTTGGAAATGAGAAATTAACCTTT CAMSASNFGNEKLTF TRAV12-3*01 TRAJ48*01 23.0 935.0 TGTGCCAGCAGCTTAGGACGGGGCATACTCTATGGCTACACCTTC CASSLGRGILYGYTF TRBV7-2*01 TRBJ1-2*01 5.0 205.0 CAMSASNFGNEKLTF_CASSLGRGILYGYTF 1 7065 PGT-178 PGT 0.63 1480 PGT-178 144 6921 2 HomoSapiens PGT LLAGIGTVPI Naive T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*02:01 B2M MHCI -12201 chip0514_706458 -4.44 9.01 Chip3 T1D_7 T1D TGTGCTGCAGAGTTTAGGTGCAACATGCTCACCTTT CAAEFRCNMLTF TRAV8-3*01 TRAJ39*01 10.0 883.0 TGTGCCAGCTCACCACCGAAAAGCACAGATACGCAGTATTTT CASSPPKSTDTQYF TRBV18*01 TRBJ2-3*01 42.0 1307.0 CAAEFRCNMLTF_CASSPPKSTDTQYF 1 6049 ZNT8-173-181 ZNT8 0.41 27 NEG 152 5897 2 HomoSapiens ZNT8 IQATVMIIV Naive T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*02:01 B2M MHCI -12202 chip0514_640613 -4.11 8.48 Chip3 T1D_7 T1D TGTGCCAGCAGTTTCGTCGACAGATACCAAGAGACCCAGTACTTC CASSFVDRYQETQYF TRBV12-3*01,TRBV12-4*01 TRBJ2-5*01 2.0 17.0 _CASSFVDRYQETQYF 1 6506 PGT-178 PGT 0.94 1480 PGT-178 126 6380 2 HomoSapiens PGT LLAGIGTVPI Naive T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*02:01 B2M MHCI -12203 chip0514_57610 -0.11 8.76 Chip3 T1D_7 T1D TGTGCAATGGGCCTATCTAACTTTGGAAATGAGAAATTAACCTTT CAMGLSNFGNEKLTF TRAV12-3*01 TRAJ48*01 47.0 1680.0 TGTGCCAGCAGTTCCCCTGACAGGGGGTACACAGATACGCAGTATTTT CASSSPDRGYTDTQYF TRBV28*01 TRBJ2-3*01 27.0 1365.0 CAMGLSNFGNEKLTF_CASSSPDRGYTDTQYF 1 6022 PGT-178 PGT 0.71 1480 PGT-178 146 5876 4 HomoSapiens PGT LLAGIGTVPI Naive T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*02:01 B2M MHCI -12204 chip0514_584599 -1.61 7.15 Chip3 T1D_7 T1D TGTGCAATGAGCATATCTAACTTTGGAAATGAGAAATTAACCTTT CAMSISNFGNEKLTF TRAV12-3*01 TRAJ48*01 59.0 1744.0 TGCGCCAGCAGCCAAGAAGGGGGCACGGACACCGGGGAGCTGTTTTTT CASSQEGGTDTGELFF TRBV4-1*01 TRBJ2-2*01 32.0 1299.0 CAMSISNFGNEKLTF_CASSQEGGTDTGELFF 1 8418 PGT-178 PGT 0.78 1480 PGT-178 174 8244 3 HomoSapiens PGT LLAGIGTVPI Naive T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*02:01 B2M MHCI -12205 chip0514_536411 13.92 12.85 Chip3 T1D_7 T1D TGTGCCGTGAGTTCAGGATACAGCACCCTCACCTTT CAVSSGYSTLTF TRAV8-1*01 TRAJ11*01 17.0 871.0 TGTGCCAGCAGTTCCCTATCGGGAAGCGGTCAGCCCCAGCATTTT CASSSLSGSGQPQHF TRBV28*01 TRBJ1-5*01 42.0 1354.0 CAVSSGYSTLTF_CASSSLSGSGQPQHF 12 2693 EBV-BRLF1 EBV 0.91 1264 EBV-BRLF1 157 2536 12 EBV BRLF1 YVLDHLIVV effector T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*02:01 B2M MHCI -12206 chip0514_113126 -1.29 9.55 Chip3 T1D_7 T1D TGTGCAGGGTGGGGGATGGTGGTGCTACAAACAAGCTCGTCTTT CAGWGMVg?tATNKLVF TRAV25*01 TRAJ32*01 34.0 1566.0 CAGWGMVg?tATNKLVF_ 1 7247 MART1-A28L MART1 0.83 84 NEG 143 7104 3 HomoSapiens MART1 ALGIGILTV Naive T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*02:01 B2M MHCI -12207 chip0514_641727 6.47 11.73 Chip3 T1D_7 T1D TGTGCCAGTAGTACTCGGAGCGGGAGCGAGCAGTACTTC CASSTRSGSEQYF TRBV19*01 TRBJ2-7*01 4.0 435.0 _CASSTRSGSEQYF 1 6598 M1 FLU 0.85 1250 M1 147 6451 7 InfluenzaA M1 GILGFVFTL transitional T cells between effector and memory populations PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*02:01 B2M MHCI -12208 chip0514_390559 6.27 9.96 Chip3 T1D_7 T1D _ 6746 6766 EBV-LMP2-FLY EBV 0.96 355 EBV-LMP2-FLY 149 6617 6 EBV LMP2 FLYALALLL central memory T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*02:01 B2M MHCI -12209 chip0514_23839 -3.0 9.25 Chip3 T1D_7 T1D TGTGCAATGAGCGGCTCTAACTTTGGAAATGAGAAATTAACCTTT CAMSGSNFGNEKLTF TRAV12-3*01 TRAJ48*01 1.0 21.0 TGTGCCAGCAGCCAAAGCGGGGGGGCGACAGATACGCAGTATTTT CASSQSGGATDTQYF TRBV3-1*01 TRBJ2-3*01 26.0 1045.0 CAMSGSNFGNEKLTF_CASSQSGGATDTQYF 1 7682 PGT-178 PGT 0.92 1480 PGT-178 145 7537 2 HomoSapiens PGT LLAGIGTVPI Naive T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*02:01 B2M MHCI -12210 chip0514_538372 9.23 12.05 Chip3 T1D_7 T1D _ 6746 4193 EBV-BRLF1 EBV 0.94 1264 EBV-BRLF1 153 4040 7 EBV BRLF1 YVLDHLIVV transitional T cells between effector and memory populations PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*02:01 B2M MHCI -12211 chip0514_630703 -1.9 10.01 Chip3 T1D_7 T1D TGTGCCAGCAGCCAAGTCCTAGCGGACCCCACAGATACGCAGTATTTT CASSQVLADPTDTQYF TRBV3-1*01 TRBJ2-3*01 92.0 3745.0 _CASSQVLADPTDTQYF 1 6683 PGT-178 PGT 0.7 1480 PGT-178 141 6542 3 HomoSapiens PGT LLAGIGTVPI Naive T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*02:01 B2M MHCI -12212 chip0514_520333 -1.07 9.9 Chip3 T1D_7 T1D TGCAGCGTTGAGTTTATGGAAGCCGTAGCGTCCGATACGCAGTATTTT CSVEFMEAVASDTQYF TRBV29-1*01 TRBJ2-3*01 1.0 27.0 _CSVEFMEAVASDTQYF 1 5035 IGRP-211-219 IGRP 0.74 13 NEG 154 4881 3 HomoSapiens IGRP NLFLFLFAV Naive T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*02:01 B2M MHCI -12213 chip0514_132851 -3.65 11.6 Chip3 T1D_7 T1D TGTGCCAGCAGCTTGGGGACTAGCGGGCAGAACACCGGGGAGCTGTTTTTT CASSLGTSGQNTGELFF TRBV13*01 TRBJ2-2*01 6.0 241.0 _CASSLGTSGQNTGELFF 1 5867 PGT-178 PGT 0.77 1480 PGT-178 135 5732 1 HomoSapiens PGT LLAGIGTVPI Naive T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*02:01 B2M MHCI -12214 chip0514_869885 -2.94 12.81 Chip3 T1D_7 T1D TGTGCTACGGACGCGGCCGACTACAAGCTCAGCTTT CATDAADYKLSF TRAV17*01 TRAJ20*01 18.0 1425.0 CATDAADYKLSF_ 1 5647 GP160-311-320 HIV 0.83 109 GP160-311-320 137 5510 1 HIV-1 GP160 RGPGRAFVTI Naive T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*02:01 B2M MHCI -12215 chip0514_524351 -1.31 7.27 Chip3 T1D_8 T1D TGTGCAATGAGCTTTTCTAACTTTGGAAATGAGAAATTAACCTTT CAMSFSNFGNEKLTF TRAV12-3*01 TRAJ48*01 32.0 1180.0 CAMSFSNFGNEKLTF_ 1 5694 PGT-178 PGT 0.91 1480 PGT-178 131 5563 3 HomoSapiens PGT LLAGIGTVPI Naive T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*02:01 B2M MHCI -12216 chip0514_13242 -1.2 7.73 Chip3 T1D_7 T1D TGTGCAATGAGCTGGGGGGGAGGAAAGCTTATCTTC CAMSWGGGKLIF TRAV12-3*01 TRAJ23*01 12.0 848.0 TGCGCCAGCAGCCAAGTAATGGGTGGGGCGATCTCTGGAAACACCATATATTTT CASSQVMGGAISGNTIYF TRBV4-1*01 TRBJ1-3*01 1.0 39.0 CAMSWGGGKLIF_CASSQVMGGAISGNTIYF 1 7903 PGT-178 PGT 0.84 1480 PGT-178 139 7764 3 HomoSapiens PGT LLAGIGTVPI Naive T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*02:01 B2M MHCI -12217 chip0514_495878 -3.45 13.5 Chip3 T1D_7 T1D TGCAGCGCCCCGGGAGGGTCCTACAATGAGCAGTTCTTC CSAPGGSYNEQFF TRBV29-1*01 TRBJ2-1*01 62.0 4887.0 _CSAPGGSYNEQFF 1 4238 IGRP-152-160-WLI IGRP 0.72 27 IGRP-152-160-WLI 139 4099 1 HomoSapiens IGRP FLWSVFWLI Naive T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*02:01 B2M MHCI -12218 chip0514_495377 12.94 7.24 Chip3 T1D_7 T1D TGTGCTCTTAGCAACACAGGCAAACTAATCTTT CALSNTGKLIF TRAV8-1*01 TRAJ37*01 14.0 874.0 CALSNTGKLIF_ 1 5044 EBV-BRLF1 EBV 0.97 1264 EBV-BRLF1 164 4880 10 EBV BRLF1 YVLDHLIVV effector memory T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*02:01 B2M MHCI -12219 chip0514_799514 -3.0 13.24 Chip3 T1D_7 T1D TGTGTCCTTGGTGCTACAAACAAGCTCATCTTT CVLGATNKLIF TRAV12-1*01 TRAJ32*01 17.0 1464.0 CVLGATNKLIF_ 1 4271 ZNT8-115-123 ZNT8 0.93 74 NEG 134 4137 1 HomoSapiens ZNT8 LLSLFSLWL Naive T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*02:01 B2M MHCI -12220 chip0514_347398 -2.76 11.36 Chip3 T1D_7 T1D TGTGCTACGGACGCGGCCGCCTACAAGCTCAGCTTT CATDAAAYKLSF TRAV17*01 TRAJ20*01 9.0 618.0 TGTGCCAGCCTTCAGGAGGGAGAATATACGCAGTATTTT CASLQEGEYTQYF TRBV12-3*01,TRBV12-4*01 TRBJ2-3*01 26.0 1840.0 CATDAAAYKLSF_CASLQEGEYTQYF 1 6752 GP160-311-320 HIV 0.5 109 NEG 152 6600 1 HIV-1 GP160 RGPGRAFVTI Naive T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*02:01 B2M MHCI -12221 chip0514_750389 -3.37 10.21 Chip3 T1D_7 T1D TGTGCAGCAAGCGACACTTATAACGACTACAAGCTCAGCTTT CAASDTYNDYKLSF TRAV29/DV5*01 TRAJ20*01 6.0 152.0 TGTGCCAGCAGCTTGACCTCTAGCAGGGAGCAAGAGACCCAGTACTTC CASSLTSSREQETQYF TRBV13*01 TRBJ2-5*01 25.0 1339.0 CAASDTYNDYKLSF_CASSLTSSREQETQYF 1 7195 PREINS-2-10 INS 1.0 37 PREINS-2-10 146 7049 2 HomoSapiens PREINS ALWMRLLPL Naive T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*02:01 B2M MHCI -12222 chip0514_778772 -3.73 9.26 Chip3 T1D_7 T1D TGTGCTGTGAGAGAGATAGCAAATTCCGGGTATGCACTCAACTTC CAVREIANSGYALNF TRAV3*01 TRAJ41*01 46.0 2495.0 TGTGCACCAGGGGTAACGAGGAAGCCAAGGAAATCTCATCTTT CAPGVTR??aSQGNLIF TRAV27*01 TRAJ42*01 31.0 1385.0 0.3 TGTGCCAGCAGCCTAGGACAGGGGGCTGGCAATGAGCAGTTCTTC CASSLGQGAGNEQFF TRBV13*01 TRBJ2-1*01 4.0 293.0 CAVREIANSGYALNF_CASSLGQGAGNEQFF 1 7670 ZNT8-293-300 ZNT8 0.87 17 ZNT8-293-300 142 7528 2 HomoSapiens ZNT8 LAVDGVLSV Naive T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*02:01 B2M MHCI -12223 chip0514_742371 -2.73 11.84 Chip3 T1D_7 T1D _ 6746 6659 PGT-178 PGT 1.0 1480 PGT-178 150 6509 1 HomoSapiens PGT LLAGIGTVPI Naive T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*02:01 B2M MHCI -12224 chip0514_434178 -4.15 7.9 Chip3 T1D_7 T1D TGTGCCAGCAGACCCATAACCGGGGAGCTGTTTTTT CASRPITGELFF TRBV7-6*01 TRBJ2-2*01 9.0 440.0 _CASRPITGELFF 1 7322 PGT-178 PGT 0.55 1480 PGT-178 135 7187 2 HomoSapiens PGT LLAGIGTVPI Naive T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*02:01 B2M MHCI -12225 chip0514_741722 12.91 8.42 Chip3 T1D_7 T1D TGTGCCAGCAGTTCCCTATCGGGAAGCGGTCAGCCCCAGCATTTT CASSSLSGSGQPQHF TRBV28*01 TRBJ1-5*01 7.0 338.0 _CASSSLSGSGQPQHF 23 2718 EBV-BRLF1 EBV 0.83 1264 NEG 172 2546 10 EBV BRLF1 YVLDHLIVV effector memory T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*02:01 B2M MHCI -12226 chip0514_670820 -3.21 13.61 Chip3 T1D_7 T1D TGTGCCGTGTTTTCCTCTAGCAACACAGGCAAACTAATCTTT CAVFSSSNTGKLIF TRAV12-1*01 TRAJ37*01 7.0 451.0 CAVFSSSNTGKLIF_ 1 3994 ZNT8-228-236 ZNT8 0.96 8 ZNT8-228-236 137 3857 1 HomoSapiens ZNT8 SISVLISAL Naive T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*02:01 B2M MHCI -12227 chip0514_606762 -4.3 9.65 Chip3 T1D_7 T1D TGTGTGGTGGCCGACTACAAGCTCAGCTTT CVVADYKLSF TRAV12-1*01 TRAJ20*01 1.0 12.0 TGTGCCATCAGTGAAGTCGAGGAAACAGGGCTGAACGAGCAGTACTTC CAISEVEETGLNEQYF TRBV10-3*01 TRBJ2-7*01 73.0 2532.0 CVVADYKLSF_CAISEVEETGLNEQYF 1 5359 PGT-178 PGT 0.89 1480 PGT-178 145 5214 4 HomoSapiens PGT LLAGIGTVPI Naive T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*02:01 B2M MHCI -12228 chip0514_797064 8.76 9.69 Chip3 T1D_7 T1D TGTGCTACGGACGGGGTTTCAGGATACAGCACCCTCACCTTT CATDGVSGYSTLTF TRAV17*01 TRAJ11*01 29.0 1142.0 TGTGCCAGCAGTTCACAGGGGGGCAACTGTGGCTACACCTTC CASSSQGGNCGYTF TRBV6-5*01 TRBJ1-2*01 5.0 159.0 CATDGVSGYSTLTF_CASSSQGGNCGYTF 1 7748 EBV-LMP2-FLY EBV 0.88 355 EBV-LMP2-FLY 166 7582 10 EBV LMP2 FLYALALLL effector memory T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*02:01 B2M MHCI -12229 chip0514_508562 -2.73 13.54 Chip3 T1D_7 T1D TGTGCCGTAGATGCGAAATTAACCTTT CAVDAKLTF TRAV12-2*01 TRAJ48*01 3.0 99.0 TGTGCCAGCAGTTACGGGGGGGGAGATACGCAGTATTTT CASSYGGGDTQYF TRBV6-2*01,TRBV6-3*01 TRBJ2-3*01 14.0 553.0 CAVDAKLTF_CASSYGGGDTQYF 1 5141 MART1-ALA MART1 0.69 269 NEG 130 5011 1 HomoSapiens MART1 ALAGIGILTV Naive T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*02:01 B2M MHCI -12230 chip0514_633249 -2.67 14.33 Chip3 T1D_8 T1D TCTGCAGAGAATTATTTACTTGTTTTCTTTT SAENY??tYLFSF TRAV13-2*01 TRAJ49*01 9.0 825.0 TGTGCCAGCAGGATAAGAGAGACCCAGTACTTC CASRIRETQYF TRBV2*01 TRBJ2-5*01 14.0 1133.0 SAENY??tYLFSF_CASRIRETQYF 1 2784 POL-334-342 HIV 0.91 12 POL-334-342 155 2629 1 HIV-1 POL VIYQYMDDL Naive T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*02:01 B2M MHCI -12231 chip0514_685906 -0.67 8.64 Chip3 T1D_8 T1D TGTGCTGTTTTTGACAACTATCAGTTAATCTGG CAVFDNYQLIW TRAV12-1*01 TRAJ33*01 1.0 11.0 CAVFDNYQLIW_ 1 4912 PGT-178 PGT 0.66 1480 PGT-178 137 4775 4 HomoSapiens PGT LLAGIGTVPI Naive T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*02:01 B2M MHCI -12232 chip0514_612695 -0.47 8.53 Chip3 T1D_7 T1D TGTGTGGGGTACCAGGGAGGAAAGCTTATCTTC CVGYQGGKLIF TRAV12-1*01 TRAJ23*01 16.0 1151.0 TGTGCCAGCAGTTCCGACGACGGTGTACGGACCCAGTACTTC CASSSDDGVRTQYF TRBV6-5*01 TRBJ2-5*01 1.0 14.0 CVGYQGGKLIF_CASSSDDGVRTQYF 1 8005 PGT-178 PGT 0.47 1480 NEG 142 7863 4 HomoSapiens PGT LLAGIGTVPI Naive T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*02:01 B2M MHCI -12233 chip0514_669749 10.8 8.37 Chip3 T1D_7 T1D TGTGCTGTTCTCATGGATAGCAACTATCAGTTAATCTGG CAVLMDSNYQLIW TRAV21*01 TRAJ33*01 20.0 1253.0 TGCGCCAGCAGTGGGGACGGGATGAACACTGAAGCTTTCTTT CASSGDGMNTEAFF TRBV10-2*01 TRBJ1-1*01 33.0 1289.0 CAVLMDSNYQLIW_CASSGDGMNTEAFF 20 6107 EBV-LMP2A EBV 0.94 700 EBV-LMP2A 167 5940 10 EBV LMP2A CLGGLLTMV effector memory T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*02:01 B2M MHCI -12234 chip0514_670060 5.32 8.95 Chip3 T1D_8 T1D TGTGCTACGACCGGGACTTTCGTATATAGCACTGTGAACTTT CATTGTFVYSTVNF TRAV17*01 TRAJ11*01 3.0 232.0 TGTGCCAGCAGTTACCAGGGGGGGAATGAGCAGTTCTTC CASSYQGGNEQFF TRBV6-5*01 TRBJ2-1*01 1.0 63.0 CATTGTFVYSTVNF_CASSYQGGNEQFF 1 5233 EBV-LMP2-FLY EBV 0.84 355 EBV-LMP2-FLY 148 5085 6 EBV LMP2 FLYALALLL central memory T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*02:01 B2M MHCI -12235 chip0514_83248 -2.3 9.9 Chip3 T1D_7 T1D TGTGCCAGCAGTCCAAATTCGTTTGAGCAGTTCTTC CASSPNSFEQFF TRBV12-3*01,TRBV12-4*01 TRBJ2-1*01 11.0 711.0 _CASSPNSFEQFF 1 7265 PREINS-2-10 INS 0.65 37 PREINS-2-10 135 7130 3 HomoSapiens PREINS ALWMRLLPL Naive T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*02:01 B2M MHCI -12236 chip0514_57897 11.03 8.98 Chip3 T1D_8 T1D TGTGCTGTCCTGATGGATAGCAACTATCAGTTAATCTGG CAVLMDSNYQLIW TRAV21*01,TRAV12-3*01 TRAJ33*01 4.0 273.0 TGCGCCAGCAGTGATGACGGGATGAACACTGAAGCTTTCTTT CASSDDGMNTEAFF TRBV10-2*01 TRBJ1-1*01 29.0 1223.0 CAVLMDSNYQLIW_CASSDDGMNTEAFF 1 7631 EBV-LMP2A EBV 0.94 700 EBV-LMP2A 150 7481 10 EBV LMP2A CLGGLLTMV effector memory T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*02:01 B2M MHCI -12237 chip0514_602530 13.15 9.82 Chip3 T1D_7 T1D TGTGCTACGGACGGCTTATCTAACTTTGGAAATGAGAAATTAACCTTT CATDGLSNFGNEKLTF TRAV17*01 TRAJ48*01 61.0 1168.0 TGTGCCAGCAGTTTTGGGCAGCAAGAGACCCAGTACTTC CASSFGQQETQYF TRBV12-3*01,TRBV12-4*01 TRBJ2-5*01 10.0 536.0 CATDGLSNFGNEKLTF_CASSFGQQETQYF 1 3878 EBV-BLMF1 EBV 0.87 2531 NEG 159 3719 12 EBV BLMF1 GLCTLVAML effector T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*02:01 B2M MHCI -12238 chip0514_243460 -1.17 7.93 Chip3 T1D_7 T1D TGTGCCAACAGCTTCACAGGGGCTGGGGAGTCTACAATGAGCAGTTCTTC CANSFTGAg?gGVYNEQFF TRBV7-3*01 TRBJ2-1*01 20.0 1182.0 _CANSFTGAg?gGVYNEQFF 1 6274 ZNT8-115-123 ZNT8 0.9 74 ZNT8-115-123 130 6144 4 HomoSapiens ZNT8 LLSLFSLWL Naive T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*02:01 B2M MHCI -12239 chip0514_379009 16.3 11.65 Chip3 T1D_8 T1D TGTGCTGGGGGGGGGGATGGAGGAAGCCAAGGAAATCTCATCTTT CAGGGDGGSQGNLIF TRAV21*01 TRAJ42*01 5.0 119.0 CAGGGDGGSQGNLIF_ 1 3155 M1 FLU 0.9 1250 M1 159 2996 12 InfluenzaA M1 GILGFVFTL effector T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*02:01 B2M MHCI -12240 chip0514_715148 -3.71 13.67 Chip3 T1D_8 T1D TGTGCTCCTAGGACCAATGCAGGCAAATCAACCTTT CAPRTNAGKSTF TRAV13-2*01 TRAJ27*01 1.0 42.0 TGCAGTGCTTCACCCGGGACTAGCGGAACCTACGAGCAGTACTTC CSASPGTSGTYEQYF TRBV20-1*01 TRBJ2-7*01 16.0 686.0 CAPRTNAGKSTF_CSASPGTSGTYEQYF 1 3646 PGT-178 PGT 0.74 1480 PGT-178 150 3496 1 HomoSapiens PGT LLAGIGTVPI Naive T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*02:01 B2M MHCI -12241 chip0514_489866 10.64 7.69 Chip3 T1D_7 T1D TATGCCGTGAAGGGATCGGGGGACAGCTGGGGGAAATTGCAGTTT YAVKGSGDSWGKLQF TRAV12-2*01 TRAJ24*01 7.0 287.0 YAVKGSGDSWGKLQF_ 1 5619 ZNT8-153-161 ZNT8 1.0 41 ZNT8-153-161 176 5443 10 HomoSapiens ZNT8 VVTGVLVYL effector memory T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*02:01 B2M MHCI -12242 chip0514_874359 -3.96 12.2 Chip3 T1D_7 T1D TGTGCAATGAGCGCTTCTAACTTTGGAAATGAGAAATTAACCTTT CAMSASNFGNEKLTF TRAV12-3*01 TRAJ48*01 21.0 706.0 TGTGCCAGCTCACCACGAACAGGGGTCTCGAACACCGGGGAGCTGTTTTTT CASSPRTGVSNTGELFF TRBV18*01 TRBJ2-2*01 50.0 2015.0 CAMSASNFGNEKLTF_CASSPRTGVSNTGELFF 1 5954 PGT-178 PGT 0.55 1480 NEG 150 5804 1 HomoSapiens PGT LLAGIGTVPI Naive T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*02:01 B2M MHCI -12243 chip0514_599398 -2.28 9.42 Chip3 T1D_7 T1D _ 6746 6289 PGT-178 PGT 0.91 1480 PGT-178 147 6142 3 HomoSapiens PGT LLAGIGTVPI Naive T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*02:01 B2M MHCI -12244 chip0514_149278 -2.86 7.53 Chip3 T1D_8 T1D TGTGCAATGACCCTATCTAACTTTGGAAATGAGAAATTAACCTTT CAMTLSNFGNEKLTF TRAV12-3*01 TRAJ48*01 22.0 704.0 TGTGCCAGCAGTTTTGCACAGGGCAAAAGCCTATCCGACGAGCAGTACTTC CASSFAQGKSLSDEQYF TRBV28*01 TRBJ2-7*01 27.0 1356.0 CAMTLSNFGNEKLTF_CASSFAQGKSLSDEQYF 1 7444 PGT-178 PGT 0.82 1480 PGT-178 144 7300 2 HomoSapiens PGT LLAGIGTVPI Naive T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*02:01 B2M MHCI -12245 chip0514_130895 -4.16 7.52 Chip3 T1D_7 T1D TGTGCAATGAGAGATACTGGAGGCTTCAAAACTATCTTT CAMRDTGGFKTIF TRAV14/DV4*01 TRAJ9*01 34.0 1987.0 TGTGCCAGCAGTTACTCGGAGGGCTCCTACAATGAGCAGTTCTTC CASSYSEGSYNEQFF TRBV6-5*01 TRBJ2-1*01 3.0 62.0 CAMRDTGGFKTIF_CASSYSEGSYNEQFF 1 6967 GP160-311-320 HIV 0.89 109 NEG 133 6834 2 HIV-1 GP160 RGPGRAFVTI Naive T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*02:01 B2M MHCI -12246 chip0514_857342 -0.46 8.74 Chip3 T1D_7 T1D TGTGTGGTGAGTCGGGGTTACCAGAAAGTTACCTTT CVVSRGYQKVTF TRAV12-1*01 TRAJ13*01 20.0 1155.0 TGTGCCAGCAGCCAAGTAAGCGGAGGGGTAGAGACCCAGTACTTC CASSQVSGGVETQYF TRBV14*01 TRBJ2-5*01 5.0 288.0 CVVSRGYQKVTF_CASSQVSGGVETQYF 1 9327 PGT-178 PGT 0.78 1480 PGT-178 152 9175 4 HomoSapiens PGT LLAGIGTVPI Naive T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*02:01 B2M MHCI -12247 chip0514_800670 5.83 12.74 Chip3 T1D_7 T1D TGTGCAACGGTACCTAGCAACACAGGCAAACTAATCTTT CATVPSNTGKLIF TRAV13-1*01 TRAJ37*01 41.0 2633.0 CTGTGCCAGTAGTCCCCGGAGCGGGGAGCCCCAGTACTTC LCQ*SPga??gcGEPQYF TRBV19*01 TRBJ2-5*01 11.0 497.0 CATVPSNTGKLIF_LCQ*SPga??gcGEPQYF 1 5877 M1 FLU 0.98 1250 M1 135 5742 7 InfluenzaA M1 GILGFVFTL transitional T cells between effector and memory populations PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*02:01 B2M MHCI -12248 chip0514_36205 -2.48 8.7 Chip3 T1D_7 T1D TGTGCAATGAGTGACTATCAGTTAATCTGG CAMSDYQLIW TRAV12-3*01 TRAJ33*01 4.0 89.0 TGTGCCAGCAGCCGCTGGACTACCGGGGGGAATGAGCAGTTCTTC CASSRWTTGGNEQFF TRBV7-2*01 TRBJ2-1*01 7.0 370.0 CAMSDYQLIW_CASSRWTTGGNEQFF 1 6856 PGT-178 PGT 0.85 1480 PGT-178 145 6711 2 HomoSapiens PGT LLAGIGTVPI Naive T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*02:01 B2M MHCI -12249 chip0514_322165 15.3 10.9 Chip3 T1D_7 T1D TGTGCCATGACGGACACCGACAAGCTCATCTTT CAMTDTDKLIF TRAV8-1*01 TRAJ34*01 4.0 164.0 CAMTDTDKLIF_ 1 5165 EBV-BRLF1 EBV 0.93 1264 EBV-BRLF1 149 5016 12 EBV BRLF1 YVLDHLIVV effector T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*02:01 B2M MHCI -12250 chip0514_522203 -3.77 12.31 Chip3 T1D_7 T1D TGTGCCGTTGTCGGCAAGCTCAGCCTT CAVVGKLSL TRAV12-2*01 TRAJ20*01 3.0 154.0 CAVVGKLSL_ 1 4556 MART1-ALA MART1 0.6 269 NEG 128 4428 1 HomoSapiens MART1 ALAGIGILTV Naive T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*02:01 B2M MHCI -12251 chip0514_439079 -3.99 12.72 Chip3 T1D_7 T1D TGTGCCAGTAGGTCGAACGGGGGGCCTAGCGCAGATACGCAGTATTTT CASRSNGGPSADTQYF TRBV19*01 TRBJ2-3*01 1.0 31.0 _CASRSNGGPSADTQYF 1 4556 PGT-178 PGT 0.68 1480 PGT-178 127 4429 1 HomoSapiens PGT LLAGIGTVPI Naive T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*02:01 B2M MHCI -12252 chip0514_428055 -1.63 12.36 Chip3 T1D_7 T1D TGTGCAATGAGTAGGTCTAACTTTGGAAATGAGAAATTAACCTTT CAMSRSNFGNEKLTF TRAV12-3*01 TRAJ48*01 17.0 369.0 TGTGCCAGCAGCTTCTCCGGGACAGGGGCGCATAATGAGCAGTTCTTC CASSFSGTGAHNEQFF TRBV5-6*01 TRBJ2-1*01 5.0 222.0 CAMSRSNFGNEKLTF_CASSFSGTGAHNEQFF 1 4425 PGT-178 PGT 0.85 1480 PGT-178 153 4272 1 HomoSapiens PGT LLAGIGTVPI Naive T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*02:01 B2M MHCI -12253 chip0514_798929 5.54 12.63 Chip3 T1D_7 T1D _ 6746 6790 M1 FLU 0.95 1250 M1 168 6622 7 InfluenzaA M1 GILGFVFTL transitional T cells between effector and memory populations PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*02:01 B2M MHCI -12254 chip0514_584450 7.94 8.28 Chip3 T1D_7 T1D TGTGCCAGCAGTGTGTGGGCTGGACACAATGAGCAGTTCTTC CASSVWAGHNEQFF TRBV6-4*01 TRBJ2-1*01 1.0 13.0 _CASSVWAGHNEQFF 1 8938 EBV-BLMF1 EBV 1.0 2531 NEG 147 8791 8 EBV BLMF1 GLCTLVAML effector memory T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*02:01 B2M MHCI -12255 chip0514_388442 8.57 12.56 Chip3 T1D_7 T1D TGTGCCAGCAGTTTTAATGTGGGGACCGTTCCCTACGAGCAGTACTTC CASSFNVGTVPYEQYF TRBV27*01 TRBJ2-7*01 44.0 2197.0 _CASSFNVGTVPYEQYF 7 4011 EBV-BRLF1 EBV 0.78 1264 NEG 135 3876 7 EBV BRLF1 YVLDHLIVV transitional T cells between effector and memory populations PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*02:01 B2M MHCI -12256 chip0514_47556 -2.64 10.29 Chip3 T1D_7 T1D _ 6746 6324 ZNT8-16-24 ZNT8 0.69 39 NEG 133 6191 3 HomoSapiens ZNT8 KMYAFTLES Naive T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*02:01 B2M MHCI -12257 chip0514_228126 -1.09 9.26 Chip3 T1D_7 T1D TGTTCAATGGGCATATCTAACGTTGGCCCTGAGCCCTTAACCTTT CSMGISNVGPEPLTF TRAV12-3*01 TRAJ48*01 13.0 445.0 TGTGCCAGCAGCCAAGGGGACGTTTCACATGGTACGCAGTATTTT CASSQGDVSHGTQYF TRBV14*01 TRBJ2-3*01 9.0 313.0 CSMGISNVGPEPLTF_CASSQGDVSHGTQYF 1 7899 PGT-178 PGT 0.57 1480 PGT-178 136 7763 3 HomoSapiens PGT LLAGIGTVPI Naive T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*02:01 B2M MHCI -12258 chip0514_170917 10.85 8.22 Chip3 T1D_7 T1D TGTGCCAGCAGTTCCCTATCGGGAAGCGGTCAGCCCCAGCATTTT CASSSLSGSGQPQHF TRBV28*01 TRBJ1-5*01 24.0 1122.0 _CASSSLSGSGQPQHF 23 6064 EBV-BRLF1 EBV 1.0 1264 EBV-BRLF1 164 5900 10 EBV BRLF1 YVLDHLIVV effector memory T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*02:01 B2M MHCI -12259 chip0514_534797 14.64 8.73 Chip3 T1D_7 T1D TGTGCCGTGAAAGGCACCGACAAGCTCATCTTT CAVKGTDKLIF TRAV8-1*01 TRAJ34*01 12.0 1028.0 TGTGCCAGCAGTTTATCGGTTAGCGAATTCTACAATGAGCAGTTCTTC CASSLSVSEFYNEQFF TRBV27*01 TRBJ2-1*01 78.0 2473.0 CAVKGTDKLIF_CASSLSVSEFYNEQFF 1 4844 EBV-BRLF1 EBV 0.93 1264 EBV-BRLF1 146 4698 12 EBV BRLF1 YVLDHLIVV effector T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*02:01 B2M MHCI -12260 chip0514_295445 -2.81 8.51 Chip3 T1D_7 T1D TGTGCAATGAGCGCGATGAACAGAGATGACAAGATCATCTTT CAMSAMNRDDKIIF TRAV12-3*01 TRAJ30*01 2.0 40.0 CAMSAMNRDDKIIF_ 1 7414 ZNT8-153-161 ZNT8 0.69 41 ZNT8-153-161 140 7274 2 HomoSapiens ZNT8 VVTGVLVYL Naive T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*02:01 B2M MHCI -12261 chip0514_156114 12.52 13.45 Chip3 T1D_7 T1D TGTGCCAGCAGTTTTAATGTGGGGACCGTTCCCTACGAGCAGTACTTC CASSFNVGTVPYEQYF TRBV27*01 TRBJ2-7*01 10.0 518.0 _CASSFNVGTVPYEQYF 7 1907 EBV-BRLF1 EBV 0.61 1264 NEG 136 1771 11 EBV BRLF1 YVLDHLIVV effector T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*02:01 B2M MHCI -12262 chip0514_524704 -2.04 10.56 Chip3 T1D_7 T1D _ 6746 5613 ZNT8-186-194 ZNT8 0.56 22 NEG 137 5476 3 HomoSapiens ZNT8 VAANIVLTV Naive T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*02:01 B2M MHCI -12263 chip0514_264834 -1.54 7.77 Chip3 T1D_7 T1D TGTGCTCTGAGTGTCTCGGCCGACAGCGGCTCAACCCTGGGGAGGCTATACTTT CALSVSADSGSTLGRLYF TRAV9-2*01 TRAJ18*01 2.0 20.0 TGTGCCAGTAGTATAATGAACACTGAAGCTTTCTTT CASSIMNTEAFF TRBV19*01 TRBJ1-1*01 13.0 396.0 CALSVSADSGSTLGRLYF_CASSIMNTEAFF 1 7221 ZNT8-153-161 ZNT8 0.5 41 NEG 134 7087 4 HomoSapiens ZNT8 VVTGVLVYL Naive T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*02:01 B2M MHCI -12264 chip0514_330841 5.82 9.74 Chip3 T1D_7 T1D TATGCTGTGCAGGCAGAACGACTACAAGCTCAGATTT YAVQAE??cDYKLRF TRAV20*01 TRAJ20*01 13.0 576.0 TGTGCCAGCAGTGACCAGGGCGGTGGCTATGGCTACACCTTC CASSDQGGGYGYTF TRBV6-1*01 TRBJ1-2*01 1.0 37.0 YAVQAE??cDYKLRF_CASSDQGGGYGYTF 1 8833 EBV-LMP2-FLY EBV 0.97 355 EBV-LMP2-FLY 119 8714 6 EBV LMP2 FLYALALLL central memory T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*02:01 B2M MHCI -12265 chip0514_104986 -4.22 7.87 Chip3 T1D_7 T1D _ 6746 7006 ZNT8 ZNT8 0.61 1 NEG 125 6881 2 HomoSapiens ZNT8 VMIIVSSLAV Naive T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*02:01 B2M MHCI -12266 chip0514_329665 -4.33 8.82 Chip3 T1D_7 T1D TGTGCTTATAGGAGCCCGCCCTCATCTGAACAGCTGGTCTTT CAYRSPPSSEQLVF TRAV38-2/DV8*01 TRAJ57*01 1.0 25.0 TGCGCCAGCAGGACAGGGGGCTACGAGCAGTACTTC CASRTGGYEQYF TRBV5-1*01 TRBJ2-7*01 3.0 227.0 CAYRSPPSSEQLVF_CASRTGGYEQYF 1 7103 EBV-LMP2A EBV 0.89 700 EBV-LMP2A 145 6958 2 EBV LMP2A CLGGLLTMV Naive T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*02:01 B2M MHCI -12267 chip0514_308202 13.14 8.08 Chip3 T1D_7 T1D TGTGCCAGCAGTTTTAATGTGGGGACCGTTCCCTACGAGCAGTACTTC CASSFNVGTVPYEQYF TRBV27*01 TRBJ2-7*01 1.0 38.0 _CASSFNVGTVPYEQYF 7 5189 EBV-BRLF1 EBV 0.96 1264 EBV-BRLF1 140 5049 10 EBV BRLF1 YVLDHLIVV effector memory T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*02:01 B2M MHCI -12268 chip0514_666046 11.8 7.03 Chip3 T1D_8 T1D TGTGCTCTGCGGGGGAGGCATTCTGGGGGTTACCAGAAAGTTACCTTT CALRGRHSGGYQKVTF TRAV19*01 TRAJ13*01 35.0 1478.0 TGTGCCAGCAGTCGGCTGGGGGGGGCGCCGGGTGGCTACACCTTC CASSRLGGAPGGYTF TRBV6-1*01 TRBJ1-2*01 13.0 728.0 CALRGRHSGGYQKVTF_CASSRLGGAPGGYTF 1 7573 EBV-LMP2-FLY EBV 0.85 355 EBV-LMP2-FLY 153 7420 10 EBV LMP2 FLYALALLL effector memory T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*02:01 B2M MHCI -12269 chip0514_414895 15.16 12.59 Chip3 T1D_8 T1D TGTGCAGAGAAGAGCGGGGCCTCCGGCATCCTAATCTTT CAEKSGASGILIF TRAV5*01 TRAJ37*01 8.0 333.0 TGCAGCGTGGGGACAGGGGGCACTAATGAAAAACTGTTTTTT CSVGTGGTNEKLFF TRBV29-1*01 TRBJ1-4*01 57.0 3014.0 CAEKSGASGILIF_CSVGTGGTNEKLFF 1 2068 EBV-BLMF1 EBV 1.0 2531 NEG 137 1931 12 EBV BLMF1 GLCTLVAML effector T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*02:01 B2M MHCI -12270 chip0514_48207 11.64 8.89 Chip3 T1D_7 T1D TGTGCCGTGAAGGACACCGACAAGCTCATCTTT CAVKDTDKLIF TRAV8-1*01 TRAJ34*01 23.0 2067.0 TGTGCCAGTAGCCCCCTGCTGGGGAGCAATCAGCCCCAGCATTTT CASSPLLGSNQPQHF TRBV19*01 TRBJ1-5*01 24.0 817.0 CAVKDTDKLIF_CASSPLLGSNQPQHF 3 4988 EBV-BRLF1 EBV 0.99 1264 EBV-BRLF1 143 4845 10 EBV BRLF1 YVLDHLIVV effector memory T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*02:01 B2M MHCI -12271 chip0514_823792 -2.29 14.22 Chip3 tet_neg _ 6746 3618 MART1-ALA MART1 0.88 269 NEG 130 3488 1 HomoSapiens MART1 ALAGIGILTV Naive T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*02:01 B2M MHCI -12272 chip0514_79604 -4.71 9.79 Chip3 T1D_7 T1D TGTGCAATGAGTATGTCTAACTTTGGAAATGAGAAATTAACCTTT CAMSMSNFGNEKLTF TRAV12-3*01 TRAJ48*01 46.0 1860.0 TGCAGTCCCGGACAGGGGGCGCTGGGTTACTACAATGAGCAGTTCTTC CSPGQGALGYYNEQFF TRBV20-1*01 TRBJ2-1*01 31.0 1611.0 CAMSMSNFGNEKLTF_CSPGQGALGYYNEQFF 1 5432 PGT-178 PGT 0.93 1480 PGT-178 132 5300 2 HomoSapiens PGT LLAGIGTVPI Naive T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*02:01 B2M MHCI -12273 chip0514_28409 -3.62 8.49 Chip3 T1D_7 T1D TGTGCAATGAGCATATCTAACTTTGGAAATGAGAAATTAACCTTT CAMSISNFGNEKLTF TRAV12-3*01 TRAJ48*01 12.0 310.0 CAMSISNFGNEKLTF_ 13 8899 PGT-178 PGT 0.67 1480 PGT-178 157 8742 2 HomoSapiens PGT LLAGIGTVPI Naive T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*02:01 B2M MHCI -12274 chip0514_328340 -1.95 7.99 Chip3 T1D_7 T1D TGTGCCAGTAGTACCCTAGCGGGGACCTACAATGAGCAGTTCTTC CASSTLAGTYNEQFF TRBV19*01 TRBJ2-1*01 80.0 4534.0 _CASSTLAGTYNEQFF 1 7732 M1 FLU 0.77 1250 M1 151 7581 4 InfluenzaA M1 GILGFVFTL Naive T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*02:01 B2M MHCI -12275 chip0514_235390 -2.13 7.45 Chip3 T1D_7 T1D TGTGCTCTTCTGATTTCAGATGGCCAGAAGCTGCTCTTT CALLISDGQKLLF TRAV9-2*01 TRAJ16*01 3.0 61.0 TGTGCCAGTAGCAGCGTACGGGGGAAAGGCTACACCTTC CASSSVRGKGYTF TRBV19*01 TRBJ1-2*01 14.0 1065.0 CALLISDGQKLLF_CASSSVRGKGYTF 1 7056 PGT-178 PGT 0.86 1480 PGT-178 119 6937 4 HomoSapiens PGT LLAGIGTVPI Naive T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*02:01 B2M MHCI -12276 chip0514_565285 6.71 12.74 Chip3 T1D_7 T1D TGTGCCAGTAGTATGAGGTCAGCCTACGAGCAGTACTTC CASSMRSAYEQYF TRBV19*01 TRBJ2-7*01 28.0 1589.0 _CASSMRSAYEQYF 6 5016 M1 FLU 0.9 1250 M1 144 4872 7 InfluenzaA M1 GILGFVFTL transitional T cells between effector and memory populations PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*02:01 B2M MHCI -12277 chip0514_503475 -2.84 13.35 Chip3 T1D_7 T1D _ 6746 4785 PREINS-6-14 INS 0.69 20 NEG 140 4645 1 HomoSapiens PREINS RLLPLLALL Naive T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*02:01 B2M MHCI -12278 chip0514_303870 -0.77 8.17 Chip3 T1D_8 T1D TGTGCCGCGGATGGCTTTCAGAAACTTGTATTT CAADGFQKLVF TRAV12-1*01 TRAJ8*01 24.0 1858.0 TATGCCAGCAGTTTGACAGGGAGCGGCTACACCTTC YASSLTGSGYTF TRBV27*01 TRBJ1-2*01 1.0 93.0 CAADGFQKLVF_YASSLTGSGYTF 1 3946 MART1-ALA MART1 0.9 269 MART1-ALA 159 3787 3 HomoSapiens MART1 ALAGIGILTV Naive T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*02:01 B2M MHCI -12279 chip0514_250381 9.82 10.85 Chip3 T1D_7 T1D TGCAGTGCTACAGACAGTACCTACAATGAGCAGTTCTTC CSATDSTYNEQFF TRBV20-1*01 TRBJ2-1*01 25.0 967.0 _CSATDSTYNEQFF 6 5808 EBV-BRLF1 EBV 0.97 1264 EBV-BRLF1 153 5655 9 EBV BRLF1 YVLDHLIVV effector memory T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*02:01 B2M MHCI -12280 chip0514_875623 11.45 7.26 Chip3 T1D_7 T1D TGTGATACGGAAGGAGGGTCAGGATACAGCACCCTCACCTTT CDTEGGSGYSTLTF TRAV17*01 TRAJ11*01 9.0 315.0 TGTGCCAGCAGTGTACAGGGAGGCTCTACCTATGGCTACACCTTC CASSVQGGSTYGYTF TRBV6-1*01 TRBJ1-2*01 28.0 1287.0 CDTEGGSGYSTLTF_CASSVQGGSTYGYTF 1 7605 EBV-LMP2-FLY EBV 0.89 355 EBV-LMP2-FLY 147 7458 10 EBV LMP2 FLYALALLL effector memory T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*02:01 B2M MHCI -12281 chip0514_800601 12.55 7.56 Chip3 T1D_7 T1D TGCGCCAGCAGTGAGGCCGGGATGTCCACTGAAGCTTTCTTT CASSEAGMSTEAFF TRBV10-2*01 TRBJ1-1*01 11.0 210.0 _CASSEAGMSTEAFF 1 5293 EBV-LMP2A EBV 0.93 700 EBV-LMP2A 170 5123 10 EBV LMP2A CLGGLLTMV effector memory T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*02:01 B2M MHCI -12282 chip0514_202169 -0.93 9.12 Chip3 T1D_7 T1D TGTGCAATGAGCCGATCTAACTTTGGAAATGAGAAATTAACCTTT CAMSRSNFGNEKLTF TRAV12-3*01 TRAJ48*01 17.0 503.0 TGTGCCAGCAGCCGGGGACAGGCGACGAGCTCCTACAATGAGCAGTTCTTC CASSRGQATSSYNEQFF TRBV11-3*01 TRBJ2-1*01 4.0 159.0 CAMSRSNFGNEKLTF_CASSRGQATSSYNEQFF 1 6238 PGT-178 PGT 0.71 1480 PGT-178 135 6103 4 HomoSapiens PGT LLAGIGTVPI Naive T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*02:01 B2M MHCI -12283 chip0514_725831 14.61 9.47 Chip3 T1D_7 T1D _ 6746 3772 EBV-BRLF1 EBV 0.9 1264 EBV-BRLF1 159 3613 12 EBV BRLF1 YVLDHLIVV effector T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*02:01 B2M MHCI -12284 chip0514_596146 13.97 8.31 Chip3 T1D_7 T1D TGCGCCAGCAGTGGGGACGGGATGAACACTGAAGCTTTCTTT CASSGDGMNTEAFF TRBV10-2*01 TRBJ1-1*01 19.0 577.0 _CASSGDGMNTEAFF 131 4352 EBV-LMP2A EBV 0.82 700 EBV-LMP2A 144 4208 10 EBV LMP2A CLGGLLTMV effector memory T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*02:01 B2M MHCI -12285 chip0514_664403 15.72 9.72 Chip3 tet_neg TGTGCCGTGAACGACACCGACAAGCTCATCTTT CAVNDTDKLIF TRAV8-1*01 TRAJ34*01 5.0 187.0 CAVNDTDKLIF_ 1 5415 EBV-BRLF1 EBV 0.92 1264 EBV-BRLF1 153 5262 12 EBV BRLF1 YVLDHLIVV effector T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*02:01 B2M MHCI -12286 chip0514_299280 7.18 13.56 Chip3 T1D_7 T1D TGTGCAATGAGAGAAAGGGATAGCCACTGGCAGTTAGTCTGG CAMRERDSHWQLVW TRAV14/DV4*01 TRAJ33*01 5.0 248.0 TGTGCCAGCCGGGCGGAGGCCTATCTGAACACCGGGTAGCTGTCTTGT CASRAEAYLNTG*LSC TRBV6-1*01 TRBJ2-2*01 2.0 109.0 CAMRERDSHWQLVW_CASRAEAYLNTG*LSC 1 4065 EBV-BLMF1 EBV 0.91 2531 EBV-BLMF1 168 3897 6 EBV BLMF1 GLCTLVAML central memory T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*02:01 B2M MHCI -12287 chip0514_416304 -4.64 9.18 Chip3 T1D_7 T1D TGTGCAATGAGCGCCTCTAACTTTGGAAATGAGAAATTAACCTTT CAMSASNFGNEKLTF TRAV12-3*01 TRAJ48*01 17.0 470.0 TGTGCCAGCAGCGCATTGACAGGGGCTAATGAAAAACTGTTTTTT CASSALTGANEKLFF TRBV28*01 TRBJ1-4*01 24.0 625.0 CAMSASNFGNEKLTF_CASSALTGANEKLFF 1 6103 PGT-178 PGT 0.47 1480 PGT-178 119 5984 2 HomoSapiens PGT LLAGIGTVPI Naive T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*02:01 B2M MHCI -12288 chip0514_1613 -2.07 10.32 Chip3 T1D_8 T1D TGTGCCAGCAGCAGGGGACTAGCGGACTCCTACGAACAGTACTTC CASSRGLADSYEQYF TRBV5-4*01 TRBJ2-7*01 44.0 2352.0 _CASSRGLADSYEQYF 1 4355 PGT-178 PGT 0.74 1480 PGT-178 131 4224 3 HomoSapiens PGT LLAGIGTVPI Naive T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*02:01 B2M MHCI -12289 chip0514_630576 -3.7 12.28 Chip3 T1D_7 T1D TGTGCCAGCGCCGGACTAGCGGGAGGAGGGGAGCTGTTTTTT CASAGLAGGGELFF TRBV19*01 TRBJ2-2*01 27.0 1108.0 _CASAGLAGGGELFF 1 4205 ZNT8-115-123 ZNT8 0.59 74 NEG 135 4070 1 HomoSapiens ZNT8 LLSLFSLWL Naive T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*02:01 B2M MHCI -12290 chip0514_514416 8.73 13.38 Chip3 T1D_7 T1D TGTGCAGCAAGCGGAGGTAGCAACTATAAACTGACATTT CAASGGSNYKLTF TRAV29/DV5*01 TRAJ53*01 1.0 32.0 TGCAGTGCGGTCGGCGGGAACGGGAATGAGCAGTTCTTC CSAVGGNGNEQFF TRBV20-1*01 TRBJ2-1*01 26.0 1577.0 CAASGGSNYKLTF_CSAVGGNGNEQFF 1 4781 EBV-BRLF1 EBV 0.98 1264 EBV-BRLF1 148 4633 7 EBV BRLF1 YVLDHLIVV transitional T cells between effector and memory populations PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*02:01 B2M MHCI -12291 chip0514_706278 -1.93 11.58 Chip3 T1D_7 T1D TGTGCAAAGGGAAAACCTCCTACGACAAGGTGATATTT CAKGKPc?cYDKVIF TRAV5*01 TRAJ50*01 13.0 624.0 CAKGKPc?cYDKVIF_ 1 5040 PGT-178 PGT 0.83 1480 PGT-178 131 4909 3 HomoSapiens PGT LLAGIGTVPI Naive T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*02:01 B2M MHCI -12292 chip0514_335522 -2.84 12.65 Chip3 T1D_7 T1D TGTGCCAGCAGTTTCCCCGAGACAGGGGAAAACAATGAGCAGTTCTTC CASSFPETGENNEQFF TRBV27*01 TRBJ2-1*01 27.0 850.0 _CASSFPETGENNEQFF 1 5056 PGT-178 PGT 0.91 1480 PGT-178 122 4934 1 HomoSapiens PGT LLAGIGTVPI Naive T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*02:01 B2M MHCI -12293 chip0514_770801 15.31 11.15 Chip3 T1D_7 T1D TGTGCCGTGAAGGACACCGACAAGCTCATCTTT CAVKDTDKLIF TRAV8-1*01 TRAJ34*01 20.0 1678.0 TGTGCCGGGGCGGAGCCGGGCGTCAACTATGGCTACACCTTC CAGAEPGVNYGYTF TRBV2*01 TRBJ1-2*01 63.0 4183.0 CAVKDTDKLIF_CAGAEPGVNYGYTF 1 3020 EBV-BRLF1 EBV 0.97 1264 EBV-BRLF1 143 2877 12 EBV BRLF1 YVLDHLIVV effector T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*02:01 B2M MHCI -12294 chip0514_212777 -4.6 11.0 Chip3 T1D_7 T1D TGTGCTGCTCACAAAACCAGTGGCTCTAGGTTGACCTTT CAAHKTSGSRLTF TRAV41*01 TRAJ10*01 1.0 64.0 TGTGCTGCTCACAAACCAGTGGCTCTAGGTTGACCTTT CAAHKPg?tGSRLTF TRAV41*01 TRAJ10*01 1.0 124.0 0.33 TGCAGTGCTAGAGATGAGGGCTACGAGCAGTACTTC CSARDEGYEQYF TRBV20-1*01 TRBJ2-7*01 52.0 3641.0 CAAHKTSGSRLTF_CSARDEGYEQYF 1 5400 CVB3-P3A CVB 0.78 77 NEG 134 5266 2 CoxsackievirusB P3A GIIYIIYKL Naive T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*02:01 B2M MHCI -12295 chip0514_550412 -3.95 10.45 Chip3 T1D_7 T1D TGCGCCAGCAGCTTGGAGTTGGGCGACAGGGGAGAGTCTGGAAACACCATATATTTT CASSLELGDRGESGNTIYF TRBV5-1*01 TRBJ1-3*01 29.0 671.0 _CASSLELGDRGESGNTIYF 1 6004 PGT-178 PGT 0.52 1480 PGT-178 138 5866 2 HomoSapiens PGT LLAGIGTVPI Naive T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*02:01 B2M MHCI -12296 chip0514_309256 12.43 7.0 Chip3 T1D_7 T1D TGCGCCAGCAGTGAGGACGGGATGAACACTGAAGCTTTCTTT CASSEDGMNTEAFF TRBV10-2*01 TRBJ1-1*01 36.0 1374.0 _CASSEDGMNTEAFF 10 6071 EBV-LMP2A EBV 0.94 700 EBV-LMP2A 155 5916 10 EBV LMP2A CLGGLLTMV effector memory T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*02:01 B2M MHCI -12297 chip0514_436662 14.2 13.41 Chip3 T1D_7 T1D TGTGGGGCACGCTCACTTACCGAGGGTGGCACTGAAGCTTTCTTT CGARSLTEGGTEAFF TRAV34*01 TRAJ40*01 2.0 11.0 TGTGGGGCACGCTCAATTACCGGGGGTGGCACTGAAGCTTTCTTT CGARSITGGGTEAFF TRBV28*01 TRBJ1-1*01 42.0 2029.0 CGARSLTEGGTEAFF_CGARSITGGGTEAFF 1 1531 EBV-BRLF1 EBV 0.88 1264 NEG 148 1383 12 EBV BRLF1 YVLDHLIVV effector T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*02:01 B2M MHCI -12298 chip0514_508193 11.29 12.48 Chip3 T1D_7 T1D TGTGCCAGCAGTTTGCTACAGGGGGCGGCGGAGACCCAGTACTTC CASSLLQGAAETQYF TRBV28*01 TRBJ2-5*01 13.0 604.0 _CASSLLQGAAETQYF 2 3579 EBV-BRLF1 EBV 1.0 1264 EBV-BRLF1 128 3451 11 EBV BRLF1 YVLDHLIVV effector T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*02:01 B2M MHCI -12299 chip0514_464589 -3.95 7.49 Chip3 T1D_7 T1D TGTGCCGTTTTACAGCAGCGCTTCCCTGGTTTTTTTT CAVLQQ??cASLVFF TRAV12-2*01 TRAJ3*01 4.0 209.0 TGTGCCAGCAGCCGGGGACAGGGGCTTATTCAGGTGGACTACGAGCAGTACTTC CASSRGQGLIQVDYEQYF TRBV3-1*01 TRBJ2-7*01 33.0 902.0 CAVLQQ??cASLVFF_CASSRGQGLIQVDYEQYF 1 6484 MART1-ALA MART1 0.64 269 NEG 140 6344 2 HomoSapiens MART1 ALAGIGILTV Naive T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*02:01 B2M MHCI -12300 chip0514_82916 -2.85 8.34 Chip3 T1D_7 T1D TGTGCCAGCAGTTATAAGACAAACACCGGGGAGCTGTTTTTT CASSYKTNTGELFF TRBV6-5*01 TRBJ2-2*01 9.0 226.0 _CASSYKTNTGELFF 1 7192 IAPP-5-13 IAPP 0.9 30 IAPP-5-13 135 7057 2 HomoSapiens IAPP KLQVFLIVL Naive T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*02:01 B2M MHCI -12301 chip0514_130481 15.78 9.51 Chip3 T1D_7 T1D TTTGCTACGTCGCGCAATTCAGGATACAGCCCCCTCACCATA FATSRNSGYSPLTI TRAV17*01 TRAJ11*01 5.0 231.0 TGTGCCAGCAGTTACCAAGGGGGGCGCGGAGGCTACACCTTC CASSYQGGRGGYTF TRBV6-5*01 TRBJ1-2*01 5.0 294.0 FATSRNSGYSPLTI_CASSYQGGRGGYTF 1 3777 EBV-LMP2-FLY EBV 0.93 355 EBV-LMP2-FLY 166 3611 12 EBV LMP2 FLYALALLL effector T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*02:01 B2M MHCI -12302 chip0514_823526 13.24 7.29 Chip3 T1D_8 T1D TGTGCCGTTATAGGAGGTAGCAACTATAAACTGACATTT CAVIGGSNYKLTF TRAV12-2*01 TRAJ53*01 27.0 1300.0 TGTGCCAGTAGTATAGCTCTAGCGGGAGGAGAGCAGTTCTTC CASSIALAGGEQFF TRBV19*01 TRBJ2-1*01 16.0 805.0 CAVIGGSNYKLTF_CASSIALAGGEQFF 2 3409 PGT-178 PGT 0.94 1480 PGT-178 147 3262 10 HomoSapiens PGT LLAGIGTVPI effector memory T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*02:01 B2M MHCI -12303 chip0514_185001 -2.03 10.73 Chip3 T1D_7 T1D TGTGCCAGCAGACCAAGCGGCCTGGGGACAGATACGCAGTATTTT CASRPSGLGTDTQYF TRBV6-2*01,TRBV6-3*01 TRBJ2-3*01 1.0 64.0 _CASRPSGLGTDTQYF 1 6822 PGT-178 PGT 0.52 1480 NEG 146 6676 3 HomoSapiens PGT LLAGIGTVPI Naive T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*02:01 B2M MHCI -12304 chip0514_356207 5.32 9.78 Chip3 T1D_7 T1D TGTGCTACGGTGGGTGATTCAGGATACAGCAACCTCACCTTT CATVGDSGYSNLTF TRAV17*01 TRAJ11*01 13.0 413.0 CATVGDSGYSNLTF_ 1 5317 EBV-LMP2-FLY EBV 0.88 355 EBV-LMP2-FLY 131 5186 6 EBV LMP2 FLYALALLL central memory T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*02:01 B2M MHCI -12305 chip0514_341849 -2.31 9.22 Chip3 T1D_7 T1D TGTGCCAGCAGCTCTCACAGACAGGGGTTGGGGGAAGAGAGTGAAAAACTGTTTTTT CASSSHRQGLGEESEKLFF TRBV28*01 TRBJ1-4*01 1.0 15.0 _CASSSHRQGLGEESEKLFF 1 6449 PGT-178 PGT 0.78 1480 PGT-178 157 6292 3 HomoSapiens PGT LLAGIGTVPI Naive T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*02:01 B2M MHCI -12306 chip0514_217865 12.31 7.42 Chip3 T1D_7 T1D TGTGTTGTGAAAGACCAGGATACAGCACCCTCACCTTT CVVKDQg?aYSTLTF TRAV8-2*01 TRAJ11*01 1.0 49.0 TGCGCCAGCAGTGAGGATGGAATGAACACTGAAGCTTTCTTT CASSEDGMNTEAFF TRBV10-2*01 TRBJ1-1*01 20.0 775.0 CVVKDQg?aYSTLTF_CASSEDGMNTEAFF 1 5039 EBV-LMP2A EBV 0.93 700 EBV-LMP2A 128 4911 10 EBV LMP2A CLGGLLTMV effector memory T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*02:01 B2M MHCI -12307 chip0514_796781 -3.42 11.01 Chip3 T1D_7 T1D TGTGCAATGAGTACATCTAACTTTGGAAATGAGAAATTAACCTTT CAMSTSNFGNEKLTF TRAV12-3*01 TRAJ48*01 18.0 390.0 TGTGCCAGCAGTCCTTTTGGGGGCACTTACACAGATACGCAGTATTTT CASSPFGGTYTDTQYF TRBV12-3*01,TRBV12-4*01 TRBJ2-3*01 37.0 1933.0 CAMSTSNFGNEKLTF_CASSPFGGTYTDTQYF 1 4894 PGT-178 PGT 0.6 1480 PGT-178 119 4775 2 HomoSapiens PGT LLAGIGTVPI Naive T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*02:01 B2M MHCI -12308 chip0514_607330 5.88 11.94 Chip3 T1D_7 T1D TGTGCAATGAGCGATAGCAACTATCAGTTAATCTGG CAMSDSNYQLIW TRAV12-3*01 TRAJ33*01 3.0 203.0 TGTGCCATCAAAAGGGATACCGACAACATTCAGTACTTC CAIKRDTDNIQYF TRBV10-3*01 TRBJ2-4*01 8.0 457.0 CAMSDSNYQLIW_CAIKRDTDNIQYF 1 6033 ZNT8-153-161 ZNT8 0.89 41 ZNT8-153-161 144 5889 7 HomoSapiens ZNT8 VVTGVLVYL transitional T cells between effector and memory populations PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*02:01 B2M MHCI -12309 chip0514_168285 -2.9 14.59 Chip3 T1D_7 T1D TGTGCAATGAGTCGATCTAACTTTGGAAATGAGAAATTAACCTTT CAMSRSNFGNEKLTF TRAV12-3*01 TRAJ48*01 9.0 199.0 TGCAGTGCCTATATTCAGGGGAAAAACTCCGATACGCAGTATTTT CSAYIQGKNSDTQYF TRBV20-1*01 TRBJ2-3*01 1.0 39.0 CAMSRSNFGNEKLTF_CSAYIQGKNSDTQYF 1 3993 PGT-178 PGT 0.68 1480 PGT-178 110 3883 1 HomoSapiens PGT LLAGIGTVPI Naive T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*02:01 B2M MHCI -12310 chip0514_403330 14.98 9.06 Chip3 T1D_7 T1D TGTGCTACGGAAGGCGATTCAGGATACAGCACCCTCACCTTT CATEGDSGYSTLTF TRAV17*01 TRAJ11*01 21.0 910.0 TGTGCCAGCAGTCCACAGGGGGGAGGATATGGCTACACCTTC CASSPQGGGYGYTF TRBV6-1*01 TRBJ1-2*01 9.0 479.0 CATEGDSGYSTLTF_CASSPQGGGYGYTF 2 3354 EBV-LMP2-FLY EBV 0.95 355 EBV-LMP2-FLY 165 3189 12 EBV LMP2 FLYALALLL effector T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*02:01 B2M MHCI -12311 chip0514_311509 -3.16 12.72 Chip3 T1D_7 T1D TGTGCAATGAGTTTTTCTAACTTTGGAAATGAGAAATTAACCTTT CAMSFSNFGNEKLTF TRAV12-3*01 TRAJ48*01 38.0 1276.0 TGTGCCAGCAGCCCGACTGCCACTAGCGGGAACACCGGGGAGCTGTTTTTT CASSPTATSGNTGELFF TRBV7-6*01 TRBJ2-2*01 28.0 1209.0 CAMSFSNFGNEKLTF_CASSPTATSGNTGELFF 1 4814 PGT-178 PGT 0.85 1480 PGT-178 133 4681 1 HomoSapiens PGT LLAGIGTVPI Naive T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*02:01 B2M MHCI -12312 chip0514_218483 -5.12 9.59 Chip3 T1D_7 T1D TGTGCTTTGTTAGGAAGCCAAGGAAATCTCATCTTT CALLGSQGNLIF TRAV38-1*01 TRAJ42*01 15.0 1589.0 CALLGSQGNLIF_ 1 6165 CVB3-P3A CVB 0.96 77 CVB3-P3A 137 6028 2 CoxsackievirusB P3A GIIYIIYKL Naive T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*02:01 B2M MHCI -12313 chip0514_207799 11.72 8.53 Chip3 T1D_7 T1D TGTGCCAGCAGACCTACCCTCGGTAGCGGGTCACCCCTCCACTTT CASRPTLGSGSPLHF TRBV28*01 TRBJ1-6*01 31.0 1361.0 _CASRPTLGSGSPLHF 1 4323 EBV-BRLF1 EBV 0.93 1264 EBV-BRLF1 154 4169 10 EBV BRLF1 YVLDHLIVV effector memory T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*02:01 B2M MHCI -12314 chip0514_711719 -0.95 9.25 Chip3 T1D_7 T1D TGTGCAGGGCGTTCTAACGACTACAAGCTCAGCTTT CAGRSNDYKLSF TRAV27*01 TRAJ20*01 79.0 4964.0 CAGRSNDYKLSF_ 1 7144 ZNT8-228-236 ZNT8 0.83 8 ZNT8-228-236 119 7025 3 HomoSapiens ZNT8 SISVLISAL Naive T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*02:01 B2M MHCI -12315 chip0514_443612 12.08 10.84 Chip3 T1D_7 T1D TGTGCCAGCAGTTTTAATGTGGGGACCGTTCCCTACGAGCAGTACTTC CASSFNVGTVPYEQYF TRBV27*01 TRBJ2-7*01 26.0 991.0 _CASSFNVGTVPYEQYF 7 5713 EBV-BRLF1 EBV 0.95 1264 EBV-BRLF1 136 5577 9 EBV BRLF1 YVLDHLIVV effector memory T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*02:01 B2M MHCI -12316 chip0514_62265 9.64 13.15 Chip3 T1D_8 T1D TGTGCTGGGGAGGGCAACAAACTGGCCTTT CAGEGNKLAF TRAV12-3*01 TRAJ47*01 2.0 106.0 CAGEGNKLAF_ 1 2638 EBV-LMP2-FLY EBV 1.0 355 NEG 137 2501 6 EBV LMP2 FLYALALLL central memory T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*02:01 B2M MHCI -12317 chip0514_401353 12.97 6.68 Chip3 T1D_8 T1D TGTGCCGTTATAGGAGGTAGCAACTATAAACTGACATTT CAVIGGSNYKLTF TRAV12-2*01 TRAJ53*01 1.0 57.0 TGTGCCAGTAGTATAGCTCTAGCGGGAGGAGAGCAGTTCTTC CASSIALAGGEQFF TRBV19*01 TRBJ2-1*01 2.0 69.0 CAVIGGSNYKLTF_CASSIALAGGEQFF 2 4250 PGT-178 PGT 1.0 1480 PGT-178 173 4077 10 HomoSapiens PGT LLAGIGTVPI effector memory T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*02:01 B2M MHCI -12318 chip0514_316135 6.22 12.02 Chip3 T1D_7 T1D TGTGCTGTGACCTTTCTTGGAGGACGCCACGGAAATCTCATCTTT CAVTFLGGRHGNLIF TRAV8-4*01 TRAJ42*01 1.0 20.0 CAVTFLGGRHGNLIF_ 1 6658 M1 FLU 0.94 1250 M1 129 6529 7 InfluenzaA M1 GILGFVFTL transitional T cells between effector and memory populations PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*02:01 B2M MHCI -12319 chip0514_569702 -3.33 9.44 Chip3 tet_neg TGTGCCAGCAGTGAAGCGGGCGGACTGGGGATGTATAGCAATCAGCCCCAGCATTTT CASSEAGGLGMYSNQPQHF TRBV6-1*01 TRBJ1-5*01 4.0 48.0 _CASSEAGGLGMYSNQPQHF 1 7656 PREINS-15-24 INS 0.78 3 NEG 113 7543 2 HomoSapiens PREINS ALWGPDPAAA Naive T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*02:01 B2M MHCI -12320 chip0514_589647 12.49 10.53 Chip3 T1D_7 T1D TGTGTTACCGGCGGTGCTGACGGACTCCCCTTT CVTGGADGLPF TRAV8-2*01 TRAJ45*01 4.0 370.0 TGTGCCACCAGTGACTTCATCACAGATACGCAGTATTTT CATSDFITDTQYF TRBV24-1*01 TRBJ2-3*01 8.0 670.0 CVTGGADGLPF_CATSDFITDTQYF 1 5085 EBV-BRLF1 EBV 0.94 1264 EBV-BRLF1 153 4932 9 EBV BRLF1 YVLDHLIVV effector memory T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*02:01 B2M MHCI -12321 chip0514_546305 -2.84 12.82 Chip3 T1D_7 T1D TGTGCCAGCAGCCTCCTAGCGGGGGGGACAGATACGCAGTATTTT CASSLLAGGTDTQYF TRBV12-3*01,TRBV12-4*01 TRBJ2-3*01 15.0 640.0 _CASSLLAGGTDTQYF 1 4945 GAG-77-86 HIV 0.97 15 GAG-77-86 141 4804 1 HIV-1 GAG SLYNTVATLY Naive T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*02:01 B2M MHCI -12322 chip0514_498307 -3.82 10.51 Chip3 T1D_8 T1D TGTGCTTCGATCTATAACCAGGGAGGTGGGCTTATCTTC CASIYNQGGGLIF TRAV38-1*01 TRAJ23*01 14.0 719.0 TGTGCCAGCCCCTCTCCTAGCGGGGTTCGAGCAGATACGCAGTATTTT CASPSPSGVRADTQYF TRBV2*01 TRBJ2-3*01 48.0 2529.0 CASIYNQGGGLIF_CASPSPSGVRADTQYF 1 3929 IAPP-5-13 IAPP 0.79 30 NEG 122 3807 2 HomoSapiens IAPP KLQVFLIVL Naive T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*02:01 B2M MHCI -12323 chip0514_487377 10.19 10.33 Chip3 T1D_7 T1D TGTGCCGTGAAGGACACCGACAAGCTCATCTTT CAVKDTDKLIF TRAV8-1*01 TRAJ34*01 26.0 2821.0 CAVKDTDKLIF_ 56 6712 EBV-BRLF1 EBV 1.0 1264 EBV-BRLF1 140 6572 9 EBV BRLF1 YVLDHLIVV effector memory T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*02:01 B2M MHCI -12324 chip0514_684094 -3.93 12.69 Chip3 T1D_7 T1D TGTGCCGTGATGATAGACACACCTCTTGTCTTT CAVMIDTPLVF TRAV12-2*01 TRAJ29*01 11.0 1259.0 CAVMIDTPLVF_ 1 5363 MART1-A28L MART1 0.93 84 MART1-A28L 112 5251 1 HomoSapiens MART1 ALGIGILTV Naive T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*02:01 B2M MHCI -12325 chip0514_842106 12.81 6.88 Chip3 T1D_7 T1D TGTGCCAGCAGCCAAGGAGGTAGCGGGAGTTCAGATACGCAGTATTTT CASSQGGSGSSDTQYF TRBV4-2*01 TRBJ2-3*01 17.0 778.0 _CASSQGGSGSSDTQYF 1 4915 EBV-BRLF1 EBV 0.94 1264 EBV-BRLF1 143 4772 10 EBV BRLF1 YVLDHLIVV effector memory T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*02:01 B2M MHCI -12326 chip0514_324094 -3.63 10.02 Chip3 T1D_7 T1D TGTGCCGTGAATACTGGAGGCTTCAAAACTATCTTT CAVNTGGFKTIF TRAV12-2*01 TRAJ9*01 21.0 1524.0 TGTGCCAGCAGTTTAACCGGGGGCAATGAAGCTTTCTTT CASSLTGGNEAFF TRBV12-3*01,TRBV12-4*01 TRBJ1-1*01 6.0 322.0 CAVNTGGFKTIF_CASSLTGGNEAFF 1 6474 MART1-ALA MART1 0.71 269 MART1-ALA 126 6348 2 HomoSapiens MART1 ALAGIGILTV Naive T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*02:01 B2M MHCI -12327 chip0514_738392 -2.67 11.09 Chip3 T1D_7 T1D TGTGCCACCGGGTCTCGGACTGACGCCACAGATACGCAGTATTTT CATGSRTDATDTQYF TRBV28*01 TRBJ2-3*01 42.0 2031.0 _CATGSRTDATDTQYF 1 5056 GP160-311-320 HIV 0.78 109 NEG 112 4944 3 HIV-1 GP160 RGPGRAFVTI Naive T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*02:01 B2M MHCI -12328 chip0514_535046 -3.86 10.56 Chip3 T1D_7 T1D TGTGCTGTGGTCCTATCTGGGGGTTACCAGAAAGTTACCTTT CAVVLSGGYQKVTF TRAV8-3*01 TRAJ13*01 15.0 775.0 TGTGCCAGCAGCCCCTCGGGAAGCGAGCAGTACTTC CASSPSGSEQYF TRBV9*01 TRBJ2-7*01 17.0 1025.0 CAVVLSGGYQKVTF_CASSPSGSEQYF 1 5590 EBV-LMP2A EBV 0.82 700 NEG 132 5458 2 EBV LMP2A CLGGLLTMV Naive T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*02:01 B2M MHCI -12329 chip0514_532519 10.57 10.17 Chip3 T1D_7 T1D TGCAGTGCTAGAAGGCTCCTCGGCGGGGGACAGCCCCAGCATTTT CSARRLLGGGQPQHF TRBV20-1*01 TRBJ1-5*01 41.0 2391.0 _CSARRLLGGGQPQHF 1 5815 EBV-BRLF1 EBV 0.92 1264 EBV-BRLF1 138 5677 9 EBV BRLF1 YVLDHLIVV effector memory T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*02:01 B2M MHCI -12330 chip0514_726429 14.02 8.41 Chip3 T1D_7 T1D TGTGCCGTGAAGGACACCGACAAGCTCATCTTC CAVKDTDKLIF TRAV8-1*01 TRAJ34*01 1.0 66.0 TGCAGTGCTACAGACAGTACCTACAATGAGCAGTTCTTC CSATDSTYNEQFF TRBV20-1*01 TRBJ2-1*01 18.0 1111.0 CAVKDTDKLIF_CSATDSTYNEQFF 8 2499 EBV-BRLF1 EBV 0.95 1264 EBV-BRLF1 185 2314 10 EBV BRLF1 YVLDHLIVV effector memory T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*02:01 B2M MHCI -12331 chip0514_366128 -2.25 9.06 Chip3 T1D_7 T1D TGTGCCGTGATTAACGACTACAAGCTCAGCTTT CAVINDYKLSF TRAV12-2*01 TRAJ20*01 2.0 106.0 TGTGCCAGCAGCTTAGAGGAGCAGGGGGGCTTTAATGAAAAACTGTTTTTT CASSLEEQGGFNEKLFF TRBV7-6*01 TRBJ1-4*01 3.0 30.0 CAVINDYKLSF_CASSLEEQGGFNEKLFF 1 7168 HCV-35-44 HCV 0.64 13 HCV-35-44 138 7030 3 HCV POL YLLPRRGPRL Naive T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*02:01 B2M MHCI -12332 chip0514_750017 -3.33 9.65 Chip3 T1D_7 T1D _ 6746 7221 IAPP-5-13 IAPP 0.64 30 IAPP-5-13 143 7078 2 HomoSapiens IAPP KLQVFLIVL Naive T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*02:01 B2M MHCI -12333 chip0514_81878 -2.45 8.31 Chip3 T1D_7 T1D TGTGCAGGGCACTCGCGGAACACAGGCAAACTAATCTTT CAGHSRNTGKLIF TRAV29/DV5*01 TRAJ37*01 1.0 15.0 TGTGCCAGCAGCTTAGGAGTGGGAGGGAGTGAGCAGTTCTTC CASSLGVGGSEQFF TRBV5-4*01 TRBJ2-1*01 20.0 1105.0 CAGHSRNTGKLIF_CASSLGVGGSEQFF 1 7497 MART1-ALA MART1 0.58 269 NEG 118 7379 3 HomoSapiens MART1 ALAGIGILTV Naive T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*02:01 B2M MHCI -12334 chip0514_603225 -0.35 4.51 Chip3 T1D_7 T1D _ 6746 6323 HCV-K1S HCV 0.56 10 NEG 120 6203 5 HCV POL SLVALGINAV natural killer-like T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*02:01 B2M MHCI -12335 chip0514_802610 5.1 9.6 Chip3 T1D_8 T1D _ 6746 3743 EBV-LMP2-FLY EBV 0.91 355 NEG 137 3606 6 EBV LMP2 FLYALALLL central memory T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*02:01 B2M MHCI -12336 chip0514_518462 8.49 11.38 Chip3 T1D_7 T1D TGTGCTCCGATCGGCACTTCAGGATAAAGCACACTCACCTGT CAPIGTSG*STLTC TRAV17*01 TRAJ11*01 6.0 259.0 CAPIGTSG*STLTC_ 1 6013 EBV-LMP2-FLY EBV 0.96 355 EBV-LMP2-FLY 130 5883 6 EBV LMP2 FLYALALLL central memory T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*02:01 B2M MHCI -12337 chip0514_108051 -2.58 14.8 Chip3 T1D_7 T1D TGTGCCGCGGGAGGAGGAAGCTACATACCTACATTT CAAGGGSYIPTF TRAV12-2*01 TRAJ6*01 2.0 83.0 CAAGGGSYIPTF_ 1 3549 MART1-ALA MART1 0.47 269 MART1-ALA 131 3418 1 HomoSapiens MART1 ALAGIGILTV Naive T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*02:01 B2M MHCI -12338 chip0514_222766 -2.77 9.23 Chip3 T1D_8 T1D TGTGCAATGAGCTCATCTAACTTTGGCACTGCGCCATTAACCTTT CAMSSSNFGTAPLTF TRAV12-3*01 TRAJ48*01 24.0 1027.0 CAMSSSNFGTAPLTF_ 1 6365 PGT-178 PGT 0.64 1480 PGT-178 125 6240 2 HomoSapiens PGT LLAGIGTVPI Naive T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*02:01 B2M MHCI -12339 chip0514_75385 14.45 10.91 Chip3 T1D_7 T1D TGTGCCAGCAGTTCCTTTCACATACAGGGGGGCTACGAGCAGTACTTC CASSSFHIQGGYEQYF TRBV28*01 TRBJ2-7*01 19.0 998.0 _CASSSFHIQGGYEQYF 5 4553 IGRP-265-273 IGRP 0.96 34 IGRP-265-273 144 4409 12 HomoSapiens IGRP VLFGLGFAI effector T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*02:01 B2M MHCI -12340 chip0514_739306 11.93 7.0 Chip3 T1D_7 T1D TGTGCTGTCCTTATGGATAGCAACTATCAGTTAATCTGG CAVLMDSNYQLIW TRAV21*01 TRAJ33*01 2.0 21.0 TGCGCCAGCAGTGAGGATGGAATGAACACTGAAGCTTTCTTT CASSEDGMNTEAFF TRBV10-2*01 TRBJ1-1*01 22.0 573.0 CAVLMDSNYQLIW_CASSEDGMNTEAFF 6 7819 EBV-LMP2A EBV 0.95 700 EBV-LMP2A 155 7664 10 EBV LMP2A CLGGLLTMV effector memory T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*02:01 B2M MHCI -12341 chip0514_546294 8.8 13.69 Chip3 T1D_7 T1D TGTGCCAGCAGTGAGGTGGACCAATACGAGCAGTACTTC CASSEVDQYEQYF TRBV6-1*01 TRBJ2-7*01 8.0 212.0 _CASSEVDQYEQYF 2 3297 EBV-BRLF1 EBV 0.86 1264 EBV-BRLF1 133 3164 11 EBV BRLF1 YVLDHLIVV effector T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*02:01 B2M MHCI -12342 chip0514_101245 -1.97 12.53 Chip3 T1D_7 T1D TGTGTGGTGAACGAAAACTTCAACAAATTTTACTTT CVVNENFNKFYF TRAV12-1*01 TRAJ21*01 34.0 1986.0 TGTGCCTCCGGGGGGCACACCGGCGAGCTGTTTTTT CASGGHTGELFF TRBV2*01 TRBJ2-2*01 4.0 214.0 CVVNENFNKFYF_CASGGHTGELFF 1 4838 VPR-59-67 HIV 0.64 16 NEG 128 4710 4 HIV-1 VPR AIIRILQQL Naive T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*02:01 B2M MHCI -12343 chip0514_756617 -0.8 10.79 Chip3 T1D_7 T1D TGTGCCAGCAGCACGAGCATAGATACGCAGTATTTT CASSTSIDTQYF TRBV7-6*01 TRBJ2-3*01 15.0 776.0 _CASSTSIDTQYF 1 5754 PREINS-2-10 INS 1.0 37 NEG 143 5611 3 HomoSapiens PREINS ALWMRLLPL Naive T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*02:01 B2M MHCI -12344 chip0514_93601 6.14 12.67 Chip3 T1D_8 T1D TGTGCAGGAGGAGGAAGCCAAGGCAATCTCATCTTT CAGGGSQGNLIF TRAV27*01 TRAJ42*01 16.0 893.0 TGTGCTGCGGAGCGGGGGGAATCTGGCCCCACCCTGGTCTTT CAAERGESGPTLVF TRAV36/DV7*01 TRAJ47*01 9.0 182.0 0.26 CAGGGSQGNLIF_ 4 4452 M1 FLU 0.89 1250 M1 108 4344 7 InfluenzaA M1 GILGFVFTL transitional T cells between effector and memory populations PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*02:01 B2M MHCI -12345 chip0514_756707 -2.88 9.11 Chip3 T1D_7 T1D TGCAGCGTTGTCGGACCGGACTCTGGAAACACCATATATTTT CSVVGPDSGNTIYF TRBV29-1*01 TRBJ1-3*01 55.0 3333.0 _CSVVGPDSGNTIYF 1 7963 IGRP-211-219 IGRP 0.74 13 NEG 145 7818 2 HomoSapiens IGRP NLFLFLFAV Naive T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*02:01 B2M MHCI -12346 chip0514_730452 10.64 13.68 Chip3 T1D_8 T1D TGTGCCAGCAGCCAAGTGGTCGGTGCCTATGGCTACACCTTC CASSQVVGAYGYTF TRBV3-1*01 TRBJ1-2*01 9.0 468.0 _CASSQVVGAYGYTF 1 2426 EBV-BRLF1 EBV 0.92 1264 EBV-BRLF1 122 2304 11 EBV BRLF1 YVLDHLIVV effector T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*02:01 B2M MHCI -12347 chip0514_203631 13.91 8.74 Chip3 T1D_7 T1D CCTTTTCTGGGGGTTTATAACCAGGGCGGAAAGCTTATCTTC PFLGVYNQGGKLIF TRAV40*01 TRAJ23*01 4.0 46.0 TGTGCCACCAGTGAATGGACTAGCGGGCGGGGTGGGGGTGAGCAGTTCTTC CATSEWTSGRGGGEQFF TRBV24-1*01 TRBJ2-1*01 4.0 69.0 PFLGVYNQGGKLIF_CATSEWTSGRGGGEQFF 1 2828 EBV-BRLF1 EBV 1.0 1264 EBV-BRLF1 127 2701 12 EBV BRLF1 YVLDHLIVV effector T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*02:01 B2M MHCI -12348 chip0514_153562 -0.01 8.84 Chip3 T1D_7 T1D TGTGCCAGCAGTTTCGGACTCTCCTACGAGCAGTACTTC CASSFGLSYEQYF TRBV27*01 TRBJ2-7*01 10.0 941.0 _CASSFGLSYEQYF 1 5221 POL-132-140 HIV 0.8 37 POL-132-140 107 5114 4 HIV-1 POL LVGPTPVNI Naive T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*02:01 B2M MHCI -12349 chip0514_672511 9.88 10.89 Chip3 T1D_7 T1D TGTGCCAGCAGCCCCGGGACAGGGGGCGCAGATACGCAGTATTTT CASSPGTGGADTQYF TRBV6-2*01,TRBV6-3*01 TRBJ2-3*01 7.0 231.0 _CASSPGTGGADTQYF 2 4756 EBV-BRLF1 EBV 0.94 1264 EBV-BRLF1 150 4606 9 EBV BRLF1 YVLDHLIVV effector memory T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*02:01 B2M MHCI -12350 chip0514_8129 -2.32 9.21 Chip3 T1D_7 T1D TGTGCCGTTTCCCCGAATGACATGCGCTTT CAVSPNDMRF TRAV12-2*01 TRAJ43*01 4.0 112.0 TGCAGTGCTAGAGATCTACGGGGGGGCTTACAGACCCAGTACTTC CSARDLRGGLQTQYF TRBV20-1*01 TRBJ2-5*01 3.0 136.0 CAVSPNDMRF_CSARDLRGGLQTQYF 1 7850 PGT-178 PGT 0.99 1480 PGT-178 138 7712 3 HomoSapiens PGT LLAGIGTVPI Naive T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*02:01 B2M MHCI -12351 chip0514_106843 5.47 9.17 Chip3 T1D_7 T1D TGTGCTACGGAGGGGGATTCAGGATACAGCACCCTCACCTTT CATEGDSGYSTLTF TRAV17*01 TRAJ11*01 8.0 370.0 CATEGDSGYSTLTF_ 12 8764 EBV-LMP2-FLY EBV 0.97 355 EBV-LMP2-FLY 147 8617 6 EBV LMP2 FLYALALLL central memory T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*02:01 B2M MHCI -12352 chip0514_63439 11.42 12.48 Chip3 T1D_7 T1D TGTGCCGTGAGTTCAGGATACAGCACCCTCACCTTT CAVSSGYSTLTF TRAV8-1*01 TRAJ11*01 15.0 914.0 TGTGCCAGCAGTTCCCTATCGGGAAGCGGTCAGCCCCAGCATTTT CASSSLSGSGQPQHF TRBV28*01 TRBJ1-5*01 26.0 1343.0 CAVSSGYSTLTF_CASSSLSGSGQPQHF 12 3381 EBV-BRLF1 EBV 0.97 1264 EBV-BRLF1 130 3251 11 EBV BRLF1 YVLDHLIVV effector T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*02:01 B2M MHCI -12353 chip0514_880403 -3.23 11.98 Chip3 T1D_8 T1D TGTGCATTGTATTCAGGAGGAGGTGCTGACGGACTCACCTTT CALYSGGGADGLTF TRAV12-3*01 TRAJ45*01 1.0 10.0 TGTGCCAGCAGTACTCTACGGACAGGGGTGACTGAAGCTTTCTTT CASSTLRTGVTEAFF TRBV6-5*01 TRBJ1-1*01 10.0 202.0 CALYSGGGADGLTF_CASSTLRTGVTEAFF 1 4393 PGT-178 PGT 0.8 1480 NEG 134 4259 1 HomoSapiens PGT LLAGIGTVPI Naive T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*02:01 B2M MHCI -12354 chip0514_536091 -4.39 9.48 Chip3 T1D_7 T1D GGTGTGGTGAACACCAATGCAGGCAAATCAACCTTT GVVNTNAGKSTF TRAV12-1*01 TRAJ27*01 15.0 804.0 TGTGCCAGCAGTGGGGCAGAATATAGCAATCAGCCCCAGCATTTT CASSGAEYSNQPQHF TRBV2*01 TRBJ1-5*01 11.0 512.0 GVVNTNAGKSTF_CASSGAEYSNQPQHF 1 6510 PTPRN-790-798 PTPRN 0.77 6 PTPRN-790-798 130 6380 2 HomoSapiens PTPRN TIADFWQMV Naive T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*02:01 B2M MHCI -12355 chip0514_140621 -0.68 10.23 Chip3 T1D_7 T1D TGTGCAATGAGCAGGGGGAACTTTGGAAATGAGAAATTAACCTTT CAMSRGNFGNEKLTF TRAV12-3*01 TRAJ48*01 20.0 793.0 TGTGCCAGCAGTGCCCTGACTAGTGAGGGGAGGGGAGAGCAGTTCTTC CASSALTSEGRGEQFF TRBV28*01 TRBJ2-1*01 69.0 2547.0 CAMSRGNFGNEKLTF_CASSALTSEGRGEQFF 1 9285 PGT-178 PGT 0.94 1480 PGT-178 130 9155 3 HomoSapiens PGT LLAGIGTVPI Naive T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*02:01 B2M MHCI -12356 chip0514_438436 10.5 13.74 Chip3 T1D_8 T1D TGTGCCAGTAGTGTTCGGAGCTCCTACGAGCAGTACTTC CASSVRSSYEQYF TRBV19*01 TRBJ2-7*01 29.0 1712.0 _CASSVRSSYEQYF 1 2333 M1 FLU 1.0 1250 M1 123 2210 11 InfluenzaA M1 GILGFVFTL effector T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*02:01 B2M MHCI -12357 chip0514_337624 12.09 10.14 Chip3 T1D_7 T1D TGTGCCGTGGGGGGCGCCGAGACGCGCATCTTC CAVGGAETRIF TRAV8-1*01 TRAJ34*01 5.0 484.0 TGTGCCACCAGTGGCTGGCAGGGTTCGGAAGAGACCCAGTACTTC CATSGWQGSEETQYF TRBV24-1*01 TRBJ2-5*01 7.0 296.0 CAVGGAETRIF_CATSGWQGSEETQYF 1 5324 EBV-BRLF1 EBV 0.91 1264 EBV-BRLF1 153 5171 9 EBV BRLF1 YVLDHLIVV effector memory T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*02:01 B2M MHCI -12358 chip0514_815017 14.98 13.01 Chip3 T1D_7 T1D TGTGCAATGAGAGATGAAGACTACAAGCTCAGCTTT CAMRDEDYKLSF TRAV14/DV4*01 TRAJ20*01 1.0 27.0 TGCGCCAGCAGTGAATCCGGCAGGGGACAATCGGAGACCCAGTACTTC CASSESGRGQSETQYF TRBV10-1*01 TRBJ2-5*01 20.0 452.0 CAMRDEDYKLSF_CASSESGRGQSETQYF 2 1614 GP160-311-320 HIV 0.55 109 GP160-311-320 169 1445 12 HIV-1 GP160 RGPGRAFVTI effector T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*02:01 B2M MHCI -12359 chip0514_13995 11.1 7.68 Chip3 T1D_7 T1D TGTGCCAGCAGTCCACAGGGGGGAGGATATGGCTACACCTTC CASSPQGGGYGYTF TRBV6-1*01 TRBJ1-2*01 6.0 294.0 _CASSPQGGGYGYTF 2 7690 EBV-LMP2-FLY EBV 0.92 355 EBV-LMP2-FLY 159 7531 10 EBV LMP2 FLYALALLL effector memory T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*02:01 B2M MHCI -12360 chip0514_448450 -4.65 7.23 Chip3 T1D_7 T1D TGTGCTCTGAGTGATCGCAATGTTGGAGCCAATAGTAAGCTGACATTT CALSDRNVGANSKLTF TRAV9-2*01 TRAJ56*01 18.0 662.0 TGCAGCGTTGCATTGGGCAGCAGCTACGAGCAGTACTTC CSVALGSSYEQYF TRBV29-1*01 TRBJ2-7*01 96.0 5720.0 CALSDRNVGANSKLTF_CSVALGSSYEQYF 1 5550 ADH-79-88 ADH 0.7 15 ADH-79-88 125 5425 2 HomoSapiens ADH RQFGPDWIVA Naive T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*02:01 B2M MHCI -12361 chip0514_286006 -1.2 10.08 Chip3 T1D_7 T1D _ 6746 6927 MART1-ALA MART1 0.71 269 MART1-ALA 142 6785 3 HomoSapiens MART1 ALAGIGILTV Naive T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*02:01 B2M MHCI -12362 chip0514_573412 -2.85 14.56 Chip3 T1D_7 T1D CGTGCAGCCCCAATCTACCTTTGGCAAGGCGAAATTAACCTGT RAAPIYL??tGKAKLTC TRAV13-1*01 TRAJ48*01 4.0 60.0 TGCGCCAGCAGTTTAGTAGGGGGTGACTACGAGCAGTACTTC CASSLVGGDYEQYF TRBV27*01 TRBJ2-7*01 1.0 45.0 RAAPIYL??tGKAKLTC_CASSLVGGDYEQYF 1 3850 PREINS-2-10 INS 0.93 37 PREINS-2-10 154 3696 1 HomoSapiens PREINS ALWMRLLPL Naive T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*02:01 B2M MHCI -12363 chip0514_249839 5.93 13.29 Chip3 T1D_8 T1D TGTGCCAGTAGTACGGGGAGCTACGGCTACACCTTC CASSTGSYGYTF TRBV19*01 TRBJ1-2*01 30.0 1669.0 _CASSTGSYGYTF 3 5435 M1 FLU 0.91 1250 M1 113 5322 7 InfluenzaA M1 GILGFVFTL transitional T cells between effector and memory populations PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*02:01 B2M MHCI -12364 chip0514_246047 -4.07 7.3 Chip3 T1D_7 T1D TGTGCCGTGACCCTCACGGGAGGAGGAAACAAACTCACCTTT CAVTLTGGGNKLTF TRAV12-2*01 TRAJ10*01 1.0 35.0 TGTGCCAGCAGCCAAGGATCAGGGGGCAGTCAGCCCCAGCATTTT CASSQGSGGSQPQHF TRBV3-1*01 TRBJ1-5*01 18.0 601.0 CAVTLTGGGNKLTF_CASSQGSGGSQPQHF 1 8485 PGT-178 PGT 0.62 1480 PGT-178 118 8367 2 HomoSapiens PGT LLAGIGTVPI Naive T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*02:01 B2M MHCI -12365 chip0514_571894 -0.22 8.01 Chip3 T1D_7 T1D TGTGCCAGCAGCTTAAGGGATGAGCAGTTCTTC CASSLRDEQFF TRAV38-1*01 TRAJ50*01 2.0 8.0 TGTGCCAGCAGCTTAAGGGATGAGCAGTTCTTC CASSLRDEQFF TRBV7-9*01 TRBJ2-1*01 14.0 764.0 CASSLRDEQFF_CASSLRDEQFF 1 8395 INS-6-16 INS 0.62 20 INS-6-16 135 8260 4 HomoSapiens INS RLLPLLALLAL Naive T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*02:01 B2M MHCI -12366 chip0514_381098 -3.48 13.76 Chip3 T1D_7 T1D TGTGCAATGAGCGGCGGCTTTCAGAAACTTGTATTT CAMSGGFQKLVF TRAV12-3*01 TRAJ8*01 45.0 3017.0 TGTGCCAGCAGTTTAGGGCTAGCGGTGACAGATACGCAGTATTTT CASSLGLAVTDTQYF TRBV12-3*01,TRBV12-4*01 TRBJ2-3*01 14.0 689.0 CAMSGGFQKLVF_CASSLGLAVTDTQYF 1 4264 PGT-178 PGT 0.87 1480 PGT-178 137 4127 1 HomoSapiens PGT LLAGIGTVPI Naive T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*02:01 B2M MHCI -12367 chip0514_811427 -2.68 14.46 Chip3 T1D_7 T1D _ 6746 3116 M1 FLU 0.81 1250 M1 103 3013 1 InfluenzaA M1 GILGFVFTL Naive T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*02:01 B2M MHCI -12368 chip0514_250665 -4.0 11.66 Chip3 T1D_7 T1D TGTGCCGTGAAAGCTAGGGGGCTTATCTTC CAVKARGLIF TRAV12-2*01 TRAJ23*01 1.0 15.0 CAVKARGLIF_ 1 5203 PGT-178 PGT 0.44 1480 NEG 127 5076 1 HomoSapiens PGT LLAGIGTVPI Naive T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*02:01 B2M MHCI -12369 chip0514_814453 11.36 11.78 Chip3 T1D_7 T1D TGTGCCGTGAGTTCAGGATACAGCACCCTCACCTTT CAVSSGYSTLTF TRAV8-1*01 TRAJ11*01 10.0 647.0 TGTGCCAGCAGTTCCCTATCGGGAAGCGGTCAGCCCCAGCATTTT CASSSLSGSGQPQHF TRBV28*01 TRBJ1-5*01 14.0 565.0 CAVSSGYSTLTF_CASSSLSGSGQPQHF 12 3518 EBV-BRLF1 EBV 0.94 1264 EBV-BRLF1 144 3374 9 EBV BRLF1 YVLDHLIVV effector memory T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*02:01 B2M MHCI -12370 chip0514_669696 -1.91 10.24 Chip3 T1D_7 T1D TGCAGCGCGGGGGCCAGGACCGGGGAGCTGTTTTTT CSAGARTGELFF TRBV29-1*01 TRBJ2-2*01 84.0 6558.0 _CSAGARTGELFF 1 6435 MART1-A28L MART1 0.4 84 NEG 110 6325 3 HomoSapiens MART1 ALGIGILTV Naive T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*02:01 B2M MHCI -12371 chip0514_481087 -3.07 12.82 Chip3 T1D_7 T1D TGTGCGGGGGGAACTGACAGCTGGGGGCAATTGCAGTTT CAGGTDSWGQLQF TRAV12-3*01 TRAJ24*01 13.0 905.0 CAGGTDSWGQLQF_ 1 4820 PGT-178 PGT 0.85 1480 PGT-178 128 4692 1 HomoSapiens PGT LLAGIGTVPI Naive T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*02:01 B2M MHCI -12372 chip0514_650214 -4.12 7.72 Chip3 T1D_7 T1D TGTGTGATGAGCCTATCTAACTTTGGAAATGAGAAATTAACCTTT CVMSLSNFGNEKLTF TRAV12-1*01 TRAJ48*01 21.0 632.0 CVMSLSNFGNEKLTF_ 1 7514 PGT-178 PGT 0.8 1480 PGT-178 145 7369 2 HomoSapiens PGT LLAGIGTVPI Naive T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*02:01 B2M MHCI -12373 chip0514_849463 -5.02 9.57 Chip3 T1D_7 T1D TGTGCTGTGGGGATCTGGGGGTTACCAGAGGGTTACCTTT CAVGIWgg??gtYQRVTF TRAV1-2*01 TRAJ13*01 3.0 117.0 TGCGCCAGCAGCCAAGTTCCGGGGGAAAAACTGTTTTTT CASSQVPGEKLFF TRBV4-1*01 TRBJ1-4*01 15.0 582.0 CAVGIWgg??gtYQRVTF_CASSQVPGEKLFF 1 6950 INS-14-23 INS 0.81 9 INS-14-23 157 6793 2 HomoSapiens INS LALWGPDPAA Naive T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*02:01 B2M MHCI -12374 chip0514_256546 -3.0 9.69 Chip3 T1D_7 T1D TGTGCAATGAGCCGATCTAACGTTGGTCCTGGGAACTTAACCTTT CAMSRSNVGPGNLTF TRAV12-3*01 TRAJ48*01 14.0 250.0 CAMSRSNVGPGNLTF_ 1 5400 PGT-178 PGT 0.8 1480 PGT-178 117 5283 2 HomoSapiens PGT LLAGIGTVPI Naive T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*02:01 B2M MHCI -12375 chip0514_48275 -4.03 11.09 Chip3 T1D_7 T1D TGTGCCGCTGATAGCAGCTATAAATTGATCTTC CAADSSYKLIF TRAV12-1*01 TRAJ12*01 16.0 2020.0 TGTGCCAGCAGTTTAGGTGCTCAGCCCCAGCATTTT CASSLGAQPQHF TRBV12-3*01,TRBV12-4*01 TRBJ1-5*01 24.0 1229.0 CAADSSYKLIF_CASSLGAQPQHF 1 6077 MART1-ALA MART1 0.55 269 NEG 112 5965 2 HomoSapiens MART1 ALAGIGILTV Naive T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*02:01 B2M MHCI -12376 chip0514_156973 12.02 8.82 Chip3 T1D_7 T1D TGTGCCAGCAGTCCACAGGGGGGCGGATATGGCTACACCTTC CASSPQGGGYGYTF TRBV6-1*01 TRBJ1-2*01 3.0 65.0 _CASSPQGGGYGYTF 2 4852 EBV-LMP2-FLY EBV 0.94 355 EBV-LMP2-FLY 124 4728 10 EBV LMP2 FLYALALLL effector memory T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*02:01 B2M MHCI -12377 chip0514_8576 -4.25 12.36 Chip3 T1D_7 T1D TGTGCGCCCCCCCTGGGAACAACAGACTCGCTCAT CAPPLgg?NNRLAH TRAV13-1*01 TRAJ7*01 5.0 473.0 CAPPLgg?NNRLAH_ 1 5223 MART1-27-35 MART1 0.74 7 NEG 142 5081 1 HomoSapiens MART1 AAGIGILTV Naive T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*02:01 B2M MHCI -12378 chip0514_64487 14.73 13.07 Chip3 T1D_7 T1D _ 6746 2044 EBV-BRLF1 EBV 0.91 1264 EBV-BRLF1 139 1905 12 EBV BRLF1 YVLDHLIVV effector T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*02:01 B2M MHCI -12379 chip0514_766469 -2.83 14.58 Chip3 T1D_7 T1D TGTGCCAGCAGCCTTGACAGGGGGCTTTTGTACACCATATATTTT CASSLDRGLLYTIYF TRBV28*01 TRBJ1-3*01 8.0 272.0 _CASSLDRGLLYTIYF 1 4245 GP160-311-320 HIV 0.77 109 GP160-311-320 113 4132 1 HIV-1 GP160 RGPGRAFVTI Naive T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*02:01 B2M MHCI -12380 chip0514_420812 12.52 8.45 Chip3 T1D_7 T1D TTTGTTATGGAGGGTGCTTCCGGCTCCGGCACCCTCACCTTT FVMEGASGSGTLTF TRAV17*01 TRAJ11*01 13.0 1155.0 FVMEGASGSGTLTF_ 1 3402 EBV-LMP2-FLY EBV 0.9 355 EBV-LMP2-FLY 112 3290 10 EBV LMP2 FLYALALLL effector memory T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*02:01 B2M MHCI -12381 chip0514_679405 -3.78 8.83 Chip3 T1D_8 T1D _ 6746 5425 IAPP-5-13 IAPP 0.83 30 NEG 121 5304 2 HomoSapiens IAPP KLQVFLIVL Naive T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*02:01 B2M MHCI -12382 chip0514_77428 15.21 12.17 Chip3 T1D_7 T1D TGTGCCGTGAAGGACACCGACAAGCTCATCTTT CAVKDTDKLIF TRAV8-1*01 TRAJ34*01 2.0 175.0 TGCAGTGCTACAGACAGTACCTACAATGAGCAGTTCTTC CSATDSTYNEQFF TRBV20-1*01 TRBJ2-1*01 44.0 2314.0 CAVKDTDKLIF_CSATDSTYNEQFF 8 2739 EBV-BRLF1 EBV 0.97 1264 EBV-BRLF1 136 2603 12 EBV BRLF1 YVLDHLIVV effector T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*02:01 B2M MHCI -12383 chip0514_284299 11.26 12.73 Chip3 T1D_7 T1D _ 6746 3227 EBV-BLMF1 EBV 1.0 2531 EBV-BLMF1 130 3097 11 EBV BLMF1 GLCTLVAML effector T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*02:01 B2M MHCI -12384 chip0514_707880 11.88 6.8 Chip3 T1D_7 T1D TGTGCTCCGGCGGGGGCCTCAGGCTACAGCACCCTCACCTTT CAPAGASGYSTLTF TRAV17*01 TRAJ11*01 4.0 80.0 CAPAGASGYSTLTF_ 1 6210 EBV-LMP2-FLY EBV 0.94 355 EBV-LMP2-FLY 117 6093 10 EBV LMP2 FLYALALLL effector memory T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*02:01 B2M MHCI -12385 chip0514_369464 -4.43 11.08 Chip3 T1D_7 T1D TGCGCCAGCAGCCAAGATATAGGGAGGCTAGCGTCCGGCGGAGATGAGCAGTTCTTC CASSQDIGRLASGGDEQFF TRBV4-3*01 TRBJ2-1*01 27.0 1542.0 _CASSQDIGRLASGGDEQFF 1 4470 IGRP-152-160-WLI IGRP 0.96 27 IGRP-152-160-WLI 116 4354 1 HomoSapiens IGRP FLWSVFWLI Naive T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*02:01 B2M MHCI -12386 chip0514_615509 -2.45 15.06 Chip3 T1D_8 T1D TGTGCAATGAGCGGCGGGAACGACTACAAGCTCAGCTTT CAMSGGNDYKLSF TRAV12-3*01 TRAJ20*01 33.0 1858.0 TGCAGCGTTGCGAAAGCGGGCCTTACTGATAACTATGGCTACACCTTC CSVAKAGLTDNYGYTF TRBV29-1*01 TRBJ1-2*01 84.0 4081.0 CAMSGGNDYKLSF_CSVAKAGLTDNYGYTF 1 2004 PGT-178 PGT 0.95 1480 PGT-178 144 1860 1 HomoSapiens PGT LLAGIGTVPI Naive T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*02:01 B2M MHCI -12387 chip0514_100450 11.35 12.06 Chip3 T1D_7 T1D TGTGCCGTGAGTTCAGGATACAGCACCCTCACCTTT CAVSSGYSTLTF TRAV8-1*01 TRAJ11*01 37.0 3655.0 TGTGCCAGCAGTTCCCTATCGGGAAGCGGTCAGCCCCAGCATTTT CASSSLSGSGQPQHF TRBV28*01 TRBJ1-5*01 29.0 1200.0 CAVSSGYSTLTF_CASSSLSGSGQPQHF 12 3824 EBV-BRLF1 EBV 0.93 1264 EBV-BRLF1 130 3694 10 EBV BRLF1 YVLDHLIVV effector memory T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*02:01 B2M MHCI -12388 chip0514_854785 -4.26 9.84 Chip3 T1D_7 T1D TGTGCAATGAGTTTATCTAACTTTGGAAATGAGAAATTAACCTTT CAMSLSNFGNEKLTF TRAV12-3*01 TRAJ48*01 2.0 33.0 CAMSLSNFGNEKLTF_ 16 6251 PGT-178 PGT 0.86 1480 PGT-178 114 6137 2 HomoSapiens PGT LLAGIGTVPI Naive T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*02:01 B2M MHCI -12389 chip0514_15924 -3.61 9.75 Chip3 T1D_8 T1D TGCAGTGCTAGCCGGGATGAGCAGTTCTTC CSASRDEQFF TRBV20-1*01 TRBJ2-1*01 3.0 176.0 _CSASRDEQFF 1 5050 HCVNS4B-1807-1816 HCV 0.54 74 NEG 113 4937 2 HCV NS4B LLFNILGGWV Naive T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*02:01 B2M MHCI -12390 chip0514_601404 -0.73 9.33 Chip3 T1D_7 T1D _ 6746 7176 CVB3-P3A CVB 0.61 77 CVB3-P3A 118 7058 3 CoxsackievirusB P3A GIIYIIYKL Naive T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*02:01 B2M MHCI -12391 chip0514_111792 11.82 7.85 Chip3 T1D_7 T1D TGTGCCAGCAGTCGACAGGGTGGGAACTATGGCTACACCTTC CASSRQGGNYGYTF TRBV6-1*01 TRBJ1-2*01 9.0 459.0 _CASSRQGGNYGYTF 1 5474 EBV-LMP2-FLY EBV 0.98 355 EBV-LMP2-FLY 117 5357 10 EBV LMP2 FLYALALLL effector memory T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*02:01 B2M MHCI -12392 chip0514_777663 -3.35 10.26 Chip3 T1D_8 T1D TGTGCAATGAGCACGGCTAACTTTGGAAATGAGAAATTAACCTTT CAMSTANFGNEKLTF TRAV12-3*01 TRAJ48*01 13.0 714.0 CAMSTANFGNEKLTF_ 1 4563 PGT-178 PGT 0.69 1480 PGT-178 118 4445 2 HomoSapiens PGT LLAGIGTVPI Naive T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*02:01 B2M MHCI -12393 chip0514_376904 11.13 7.64 Chip3 T1D_8 T1D _ 6746 4797 EBV-LMP2A EBV 0.93 700 EBV-LMP2A 128 4669 6 EBV LMP2A CLGGLLTMV central memory T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*02:01 B2M MHCI -12394 chip0514_45601 4.73 10.24 Chip3 T1D_8 T1D _ 6746 3237 GAD65-536-545 GAD65 0.91 7 GAD65-536-545 119 3118 6 HomoSapiens GAD65 RMMEYGTTMV central memory T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*02:01 B2M MHCI -12395 chip0514_298987 15.33 12.24 Chip3 T1D_7 T1D TGTGCTTCCTCCTCCCGCTCCCTCAGGGACCTCCCCCTACATCTTT CASSSRSct??caGTSPYIF TRAV9-2*01 TRAJ40*01 8.0 257.0 CASSSRSct??caGTSPYIF_ 1 3030 MART1-ALA MART1 0.87 269 MART1-ALA 119 2911 12 HomoSapiens MART1 ALAGIGILTV effector T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*02:01 B2M MHCI -12396 chip0514_810151 11.4 7.79 Chip3 T1D_7 T1D TGTGCTACGGAAGGCAATTCAGGATACAGCACCCTCACCTTT CATEGNSGYSTLTF TRAV17*01 TRAJ11*01 37.0 1804.0 TGTGCCAGCAGTTACCAGGGGGGTGGAAGCTATGGCTACACCTTC CASSYQGGGSYGYTF TRBV6-5*01 TRBJ1-2*01 10.0 211.0 CATEGNSGYSTLTF_CASSYQGGGSYGYTF 1 5311 EBV-LMP2-FLY EBV 1.0 355 EBV-LMP2-FLY 123 5188 10 EBV LMP2 FLYALALLL effector memory T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*02:01 B2M MHCI -12397 chip0514_560710 11.95 10.63 Chip3 T1D_7 T1D TGTGCCGTGAAAGACACCAACAAGCTCATCTTT CAVKDTNKLIF TRAV8-1*01 TRAJ34*01 12.0 788.0 TGTGCCAGCAGTGGCCTACGAGGGAGCAAGGAGACCCAGTACTTC CASSGLRGSKETQYF TRBV6-1*01 TRBJ2-5*01 11.0 381.0 CAVKDTNKLIF_CASSGLRGSKETQYF 1 7336 EBV-BRLF1 EBV 0.87 1264 EBV-BRLF1 144 7192 9 EBV BRLF1 YVLDHLIVV effector memory T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*02:01 B2M MHCI -12398 chip0514_151120 -4.42 8.98 Chip3 T1D_7 T1D _ 6746 6686 CVB3-P3A CVB 0.91 77 CVB3-P3A 129 6557 2 CoxsackievirusB P3A GIIYIIYKL Naive T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*02:01 B2M MHCI -12399 chip0514_878506 6.09 13.43 Chip3 T1D_7 T1D TGTGCTTTCATGAAGGATGCTGGTGGTACTAGCTATGGAAAGCTGACTTTT CAFMKDAGGTSYGKLTF TRAV38-1*01 TRAJ52*01 26.0 1291.0 TGTGCCAGTAGTACAGGGGTCTATGGCTACACCTTC CASSTGVYGYTF TRBV19*01 TRBJ1-2*01 3.0 196.0 CAFMKDAGGTSYGKLTF_CASSTGVYGYTF 1 5345 M1 FLU 0.97 1250 M1 106 5239 7 InfluenzaA M1 GILGFVFTL transitional T cells between effector and memory populations PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*02:01 B2M MHCI -12400 chip0514_599157 -4.51 11.01 Chip3 T1D_7 T1D TGTGCCGTGAGTTGGGGAAGCCAAGGAAATCTCATCTTT CAVSWGSQGNLIF TRAV12-2*01 TRAJ42*01 3.0 78.0 CAVSWGSQGNLIF_ 1 4448 PGT-178 PGT 0.49 1480 PGT-178 108 4340 1 HomoSapiens PGT LLAGIGTVPI Naive T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*02:01 B2M MHCI -12401 chip0514_634876 -3.95 9.58 Chip3 T1D_7 T1D TGCCTCGTGGGTGCAGCCATGTACAATAACAATGACATGCGCTCT CLVGAAMYNNNDMRS TRAV4*01 TRAJ43*01 22.0 964.0 TGTGCCAGCAACAAACTGGACGAGGGCGTGGACGAGCAGTACTTC CASNKLDEGVDEQYF TRBV28*01 TRBJ2-7*01 22.0 994.0 CLVGAAMYNNNDMRS_CASNKLDEGVDEQYF 1 6303 HCV-35-44 HCV 0.68 13 HCV-35-44 108 6195 2 HCV POL YLLPRRGPRL Naive T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*02:01 B2M MHCI -12402 chip0514_104076 5.52 8.62 Chip3 T1D_8 T1D TGTGCTACGGTTGGGAATTCAGGATACAGCACCCTCACCTTT CATVGNSGYSTLTF TRAV17*01 TRAJ11*01 27.0 1168.0 TGTGCCAGCAGTGGACAGGGGGGTCACTATGGCTACACCTTC CASSGQGGHYGYTF TRBV6-1*01 TRBJ1-2*01 1.0 44.0 CATVGNSGYSTLTF_CASSGQGGHYGYTF 1 8334 EBV-LMP2-FLY EBV 0.94 355 EBV-LMP2-FLY 129 8205 6 EBV LMP2 FLYALALLL central memory T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*02:01 B2M MHCI -12403 chip0514_869280 7.75 12.81 Chip3 T1D_7 T1D TGCAGCGTAGGGGACGGCGGGACTAATGAAAAACTGTTTTTT CSVGDGGTNEKLFF TRBV29-1*01 TRBJ1-4*01 45.0 2310.0 _CSVGDGGTNEKLFF 4 3715 EBV-BLMF1 EBV 0.7 2531 NEG 106 3609 7 EBV BLMF1 GLCTLVAML transitional T cells between effector and memory populations PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*02:01 B2M MHCI -12404 chip0514_146939 -4.27 11.31 Chip3 T1D_7 T1D TGCCTCCAACATACCACGTATGCCCTCACCTTC CLQHTTYALTF TRAV4*01 TRAJ41*01 7.0 439.0 TGCAGTGCTGAAAGGGATGGCTACACCTTC CSAERDGYTF TRBV20-1*01 TRBJ1-2*01 8.0 429.0 CLQHTTYALTF_CSAERDGYTF 1 6155 HCVNS3-1073-1081 HCV 0.94 36 HCVNS3-1073-1081 134 6021 1 HCV NS3 CINGVCWTV Naive T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*02:01 B2M MHCI -12405 chip0514_569886 -3.11 9.03 Chip3 T1D_7 T1D _ 6746 6765 ZNT8-173-181 ZNT8 0.84 27 ZNT8-173-181 115 6650 2 HomoSapiens ZNT8 IQATVMIIV Naive T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*02:01 B2M MHCI -12406 chip0514_389626 -3.53 10.77 Chip3 T1D_7 T1D TGTGTGGTGTCCTCAGCTAACTTTGGAAATGAGAAATTAACCTTT CVVSSANFGNEKLTF TRAV12-1*01 TRAJ48*01 16.0 430.0 CVVSSANFGNEKLTF_ 1 6471 PGT-178 PGT 1.0 1480 NEG 124 6347 2 HomoSapiens PGT LLAGIGTVPI Naive T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*02:01 B2M MHCI -12407 chip0514_680452 -4.28 10.81 Chip3 T1D_7 T1D _ 6746 6195 EBV-LMP1-1 EBV 0.89 237 NEG 116 6079 2 EBV LMP1 YLLEMLWRL Naive T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*02:01 B2M MHCI -12408 chip0514_379161 -3.63 12.87 Chip3 T1D_8 T1D TGTGCTCTGAGTGAGGATATATCTAACTTTGGAAATGAGAAATTAACCTTT CALSEDISNFGNEKLTF TRAV19*01 TRAJ48*01 43.0 832.0 TGCAGTGCTAGGGCGGACACTATCCCTTACAATGAGCAGTTCTTC CSARADTIPYNEQFF TRBV20-1*01 TRBJ2-1*01 30.0 1788.0 CALSEDISNFGNEKLTF_CSARADTIPYNEQFF 1 3707 IGRP-265-273 IGRP 0.78 34 NEG 124 3583 1 HomoSapiens IGRP VLFGLGFAI Naive T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*02:01 B2M MHCI -12409 chip0514_782155 -3.34 11.84 Chip3 T1D_7 T1D TGCGCAATGAGCGCATCTAACTTTGGAAATGAGAAATTAACCTTT CAMSASNFGNEKLTF TRAV12-3*01 TRAJ48*01 8.0 449.0 TGTGCCTAGCAGCTCAAACAATGGGGAAACGGTTCCAGATACGCAGTATTTT CA*QLKQWgg??aaTVPDTQYF TRBV7-3*01 TRBJ2-3*01 13.0 389.0 CAMSASNFGNEKLTF_CA*QLKQWgg??aaTVPDTQYF 1 5628 PGT-178 PGT 0.67 1480 PGT-178 111 5517 1 HomoSapiens PGT LLAGIGTVPI Naive T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*02:01 B2M MHCI -12410 chip0514_15682 5.83 13.51 Chip3 T1D_7 T1D TGTGCCAGTAGTATCAGGAGCTCCTACGAGCAGTACTTC CASSIRSSYEQYF TRBV19*01 TRBJ2-7*01 17.0 1174.0 _CASSIRSSYEQYF 36 5310 M1 FLU 0.94 1250 M1 135 5175 7 InfluenzaA M1 GILGFVFTL transitional T cells between effector and memory populations PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*02:01 B2M MHCI -12411 chip0514_407490 9.37 12.42 Chip3 T1D_7 T1D _ 6746 5079 EBV-LMP2-FLY EBV 1.0 355 NEG 121 4958 6 EBV LMP2 FLYALALLL central memory T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*02:01 B2M MHCI -12412 chip0514_775141 -2.8 7.82 Chip3 T1D_7 T1D TGTGCCAGCAGTCCCAGATACACAACTAATGAAAAACTGTTTTTT CASSPRYTTNEKLFF TRBV12-3*01,TRBV12-4*01 TRBJ1-4*01 14.0 606.0 _CASSPRYTTNEKLFF 1 8082 MART1-ALA MART1 0.44 269 NEG 124 7958 2 HomoSapiens MART1 ALAGIGILTV Naive T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*02:01 B2M MHCI -12413 chip0514_626486 -3.0 12.9 Chip3 T1D_7 T1D TGTGCAATGAGCTTATCTAACTTTGGAAATGAGAAATTAACCTTT CAMSLSNFGNEKLTF TRAV12-3*01 TRAJ48*01 14.0 382.0 TGTGCCAGCAGTTTAGATACAGGGAACAATGAGCAGTTCTTC CASSLDTGNNEQFF TRBV27*01 TRBJ2-1*01 17.0 675.0 CAMSLSNFGNEKLTF_CASSLDTGNNEQFF 1 4953 PGT-178 PGT 0.91 1480 PGT-178 109 4844 1 HomoSapiens PGT LLAGIGTVPI Naive T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*02:01 B2M MHCI -12414 chip0514_353617 5.28 9.51 Chip3 T1D_8 T1D TGTGCAGGGACGACGGAGGATAGCAACTATCAGTTAATCTGG CAGTTEDSNYQLIW TRAV25*01 TRAJ33*01 52.0 3577.0 TGCAGTGCTAGAGATCTGAGGGCAGGACGCGCCTACGAGCAGTACTTC CSARDLRAGRAYEQYF TRBV20-1*01 TRBJ2-7*01 17.0 761.0 CAGTTEDSNYQLIW_CSARDLRAGRAYEQYF 3 5519 EBV-LMP2A EBV 0.7 700 EBV-LMP2A 142 5377 6 EBV LMP2A CLGGLLTMV central memory T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*02:01 B2M MHCI -12415 chip0514_476605 13.23 7.06 Chip3 T1D_8 T1D TGTGCAGAGAGTAGCGGGGCCTCCGGCAAACTAATCTTT CAESSGASGKLIF TRAV5*01 TRAJ37*01 3.0 139.0 TGCAGCGTGGGGACAGGGGGCACTAATGAAAAACTGTTTTTT CSVGTGGTNEKLFF TRBV29-1*01 TRBJ1-4*01 40.0 1766.0 CAESSGASGKLIF_CSVGTGGTNEKLFF 7 3332 EBV-BLMF1 EBV 1.0 2531 NEG 126 3206 10 EBV BLMF1 GLCTLVAML effector memory T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*02:01 B2M MHCI -12416 chip0514_191858 -1.88 8.18 Chip3 T1D_7 T1D _ 6746 6902 ZNT8-115-123 ZNT8 0.8 74 NEG 123 6779 3 HomoSapiens ZNT8 LLSLFSLWL Naive T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*02:01 B2M MHCI -12417 chip0514_400693 -2.69 7.82 Chip3 T1D_7 T1D TGTGTGGTGACCGCATCTAACTTTGGAAATGAGAAATTAACCTTT CVVTASNFGNEKLTF TRAV12-1*01 TRAJ48*01 27.0 826.0 TGTGCAGCAAGCTGCATGGCTCTAGCAACACAGGCAAACTAATCTTT CAASCMAct?SNTGKLIF TRAV23/DV6*01 TRAJ37*01 26.0 806.0 0.45 TGTGCCAGCAGTGACGTGAGCACTGAAGCTTTCTTT CASSDVSTEAFF TRBV2*01 TRBJ1-1*01 22.0 1346.0 CVVTASNFGNEKLTF_CASSDVSTEAFF 1 8616 PGT-178 PGT 0.73 1480 PGT-178 133 8483 2 HomoSapiens PGT LLAGIGTVPI Naive T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*02:01 B2M MHCI -12418 chip0514_314984 -1.46 11.68 Chip3 T1D_7 T1D TGTGCCAGCAGCCCACGGCAGGGGATAGCGTCTCGAGTTACGCAGTATTTT CASSPRQGIASRVTQYF TRBV9*01 TRBJ2-3*01 2.0 109.0 _CASSPRQGIASRVTQYF 1 5191 PTPRN-962-970 PTPRN 0.95 5 PTPRN-962-970 136 5055 3 HomoSapiens PTPRN ALTAVAEEV Naive T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*02:01 B2M MHCI -12419 chip0514_102975 -3.31 8.86 Chip3 T1D_8 T1D TGTGCTGTGGTCTCGAGCAAATCAACCTTT CAVVSSKSTF TRAV8-3*01 TRAJ27*01 1.0 67.0 TGTGCCAGTAGTTCGGGGGAGGGGTACATTCAGTACTTC CASSSGEGYIQYF TRBV19*01 TRBJ2-4*01 21.0 1416.0 CAVVSSKSTF_CASSSGEGYIQYF 1 5974 MART1-A28L MART1 0.71 84 NEG 114 5860 2 HomoSapiens MART1 ALGIGILTV Naive T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*02:01 B2M MHCI -12420 chip0514_605538 0.18 8.67 Chip3 T1D_7 T1D TGTGCAGAGAGTGACGACAACAATGACATGCGCTTT CAESDDNNDMRF TRAV13-2*01 TRAJ43*01 22.0 1510.0 CAESDDNNDMRF_ 1 7247 GP160-311-320 HIV 0.86 109 GP160-311-320 146 7101 4 HIV-1 GP160 RGPGRAFVTI Naive T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*02:01 B2M MHCI -12421 chip0514_551781 -2.36 13.96 Chip3 T1D_7 T1D _ 6746 3782 PGT-178 PGT 0.84 1480 PGT-178 119 3663 1 HomoSapiens PGT LLAGIGTVPI Naive T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*02:01 B2M MHCI -12422 chip0514_477077 5.67 12.84 Chip3 T1D_8 T1D TGTGCTTATCCTGCAGGGGCCGGTGGTCCTCGCTCTGGCGCGCTGACATTT CAYPAGAGGPRSGALTF TRAV38-2/DV8*01 TRAJ52*01 9.0 585.0 TGTGCCAGTAGTATCGGCAGTTATGGCTACACCTTC CASSIGSYGYTF TRBV19*01 TRBJ1-2*01 27.0 1841.0 CAYPAGAGGPRSGALTF_CASSIGSYGYTF 1 5936 M1 FLU 0.89 1250 M1 128 5808 7 InfluenzaA M1 GILGFVFTL transitional T cells between effector and memory populations PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*02:01 B2M MHCI -12423 chip0514_167104 -4.68 9.14 Chip3 T1D_7 T1D TGCGCTATGAGAGAGGGCGTGGCTCGCAGCGAGGGATTGGTCTCC CAMREGVARSEGLVS TRAV14/DV4*01 TRAJ12*01 5.0 353.0 CAMREGVARSEGLVS_ 1 7348 ROTA-VP3 ROTA 0.8 41 NEG 123 7225 2 RotavirusA VP3 YLLPGWKL Naive T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*02:01 B2M MHCI -12424 chip0514_426613 13.49 10.17 Chip3 T1D_7 T1D TGTGCAATGAGAGAGGGCAACTGGAGCCAATAGTAAGCTGACATTT CAMREGNtg??gaANSKLTF TRAV14/DV4*01 TRAJ56*01 1.0 51.0 TGCAGTGCGGCAGTGACAGCTACCTATGGCTACACCTTC CSAAVTATYGYTF TRBV20-1*01 TRBJ1-2*01 2.0 121.0 CAMREGNtg??gaANSKLTF_CSAAVTATYGYTF 1 4751 EBV-BRLF1 EBV 0.94 1264 EBV-BRLF1 138 4613 12 EBV BRLF1 YVLDHLIVV effector T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*02:01 B2M MHCI -12425 chip0514_491016 8.49 11.52 Chip3 T1D_7 T1D TGTGCCGTGAAAGACACCGACAAGCTCATCTTT CAVKDTDKLIF TRAV8-1*01 TRAJ34*01 1.0 63.0 CAVKDTDKLIF_ 56 5186 EBV-BRLF1 EBV 0.92 1264 EBV-BRLF1 151 5035 9 EBV BRLF1 YVLDHLIVV effector memory T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*02:01 B2M MHCI -12426 chip0514_834295 6.55 12.75 Chip3 T1D_8 T1D TGTCCCAGTAGTTTTTATCGCAATCAGCCCCAGCATCTT CPSSFYRNQPQHL TRBV19*01 TRBJ1-5*01 9.0 418.0 _CPSSFYRNQPQHL 1 4404 M1 FLU 0.97 1250 M1 126 4278 7 InfluenzaA M1 GILGFVFTL transitional T cells between effector and memory populations PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*02:01 B2M MHCI -12427 chip0514_633929 5.61 8.71 Chip3 T1D_7 T1D TGTGTGGGTTCCCGTGGGGGAGGAAGCTACATACCTACATTT CVGSRGGGSYIPTF TRAV12-1*01 TRAJ6*01 16.0 820.0 TGTGCCAGCAGCCAAGATTCGAGTGAAGCTTTCTTT CASSQDSSEAFF TRBV4-2*01 TRBJ1-1*01 25.0 1135.0 CVGSRGGGSYIPTF_CASSQDSSEAFF 2 7678 EBV-LMP1-2 EBV 0.95 41 EBV-LMP1-2 118 7560 6 EBV LMP1 YLQQNWWTL central memory T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*02:01 B2M MHCI -12428 chip0514_213655 -4.01 10.47 Chip3 T1D_7 T1D TGTGCCGTGAACAGAGATGACAAGATCATCTTT CAVNRDDKIIF TRAV12-2*01 TRAJ30*01 6.0 490.0 CAVNRDDKIIF_ 2 4860 POL-132-140 HIV 0.9 37 POL-132-140 113 4747 2 HIV-1 POL LVGPTPVNI Naive T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*02:01 B2M MHCI -12429 chip0514_334478 9.02 10.17 Chip3 T1D_7 T1D TGCAGTGCTAGAGGATCCACCTTCTACGAGCGGTACTTC CSARGSTFYERYF TRBV20-1*01 TRBJ2-7*01 18.0 1576.0 _CSARGSTFYERYF 1 5627 EBV-BRLF1 EBV 0.94 1264 EBV-BRLF1 123 5504 8 EBV BRLF1 YVLDHLIVV effector memory T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*02:01 B2M MHCI -12430 chip0514_523810 12.85 12.85 Chip3 T1D_7 T1D _ 6746 2597 EBV-BRLF1 EBV 0.65 1264 EBV-BRLF1 105 2492 11 EBV BRLF1 YVLDHLIVV effector T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*02:01 B2M MHCI -12431 chip0514_61241 -1.3 10.23 Chip3 T1D_7 T1D _ 6746 7068 PGT-178 PGT 0.68 1480 PGT-178 126 6942 3 HomoSapiens PGT LLAGIGTVPI Naive T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*02:01 B2M MHCI -12432 chip0514_30389 -3.36 10.16 Chip3 T1D_7 T1D TGTGCCAGCAGCCCCTCAGAGGGCCTATACACAGATACGCAGTATTTT CASSPSEGLYTDTQYF TRBV13*01 TRBJ2-3*01 1.0 23.0 _CASSPSEGLYTDTQYF 1 6588 HCV-35-44 HCV 0.73 13 NEG 126 6462 2 HCV POL YLLPRRGPRL Naive T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*02:01 B2M MHCI -12433 chip0514_333942 -4.41 13.17 Chip3 T1D_7 T1D TGTGCTCTAAGTCTCTATAACACCGACAAGCTCATCTTT CALSLYNTDKLIF TRAV16*01 TRAJ34*01 22.0 1600.0 TGCAGTGCTCTGGGGGGAGACTCCTACGAGCAGTACTTC CSALGGDSYEQYF TRBV20-1*01 TRBJ2-7*01 1.0 204.0 CALSLYNTDKLIF_CSALGGDSYEQYF 1 4636 IGRP-222-230 IGRP 0.91 10 IGRP-222-230 90 4546 2 HomoSapiens IGRP YLLLRVLNI Naive T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*02:01 B2M MHCI -12434 chip0514_773880 -3.09 11.79 Chip3 T1D_7 T1D TGTGCCAGCAAAAGGACGACTAGCGGGGGGATCACAGATACGCAGTATTTT CASKRTTSGGITDTQYF TRBV28*01 TRBJ2-3*01 7.0 193.0 _CASKRTTSGGITDTQYF 1 5544 PGT-178 PGT 0.96 1480 PGT-178 110 5434 4 HomoSapiens PGT LLAGIGTVPI Naive T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*02:01 B2M MHCI -12435 chip0514_847847 -0.02 4.24 Chip3 T1D_8 T1D TGTGCAATGAAAGGATCTAACTTTGGAAATGAGAAATTAACCTTT CAMKGSNFGNEKLTF TRAV12-3*01 TRAJ48*01 39.0 1427.0 CAMKGSNFGNEKLTF_ 1 6436 PGT-178 PGT 0.56 1480 PGT-178 115 6321 5 HomoSapiens PGT LLAGIGTVPI natural killer-like T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*02:01 B2M MHCI -12436 chip0514_657331 6.21 13.7 Chip3 T1D_7 T1D _ 6746 4354 M1 FLU 0.73 1250 M1 139 4215 7 InfluenzaA M1 GILGFVFTL transitional T cells between effector and memory populations PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*02:01 B2M MHCI -12437 chip0514_419176 -3.66 12.43 Chip3 T1D_8 T1D TGTGCTGTGAGAGACTGGGGAAGCTACATACCTACATTT CAVRDWGSYIPTF TRAV3*01 TRAJ6*01 37.0 2109.0 TGTGCCAGCAGCACCCCGGAAAGGGCGGGCTCCTACGAGCAGTACTTC CASSTPERAGSYEQYF TRBV5-6*01 TRBJ2-7*01 11.0 538.0 CAVRDWGSYIPTF_CASSTPERAGSYEQYF 1 3797 POL-132-140 HIV 0.95 37 POL-132-140 111 3686 1 HIV-1 POL LVGPTPVNI Naive T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*02:01 B2M MHCI -12438 chip0514_125917 -1.93 9.33 Chip3 T1D_7 T1D TGTGCCAGCAGTTTATCGGGCAGGGAGAACACCGGGGAGCTGTTTTTT CASSLSGRENTGELFF TRBV28*01 TRBJ2-2*01 33.0 1293.0 _CASSLSGRENTGELFF 1 8271 PTPRN-797-805 PTPRN 0.94 12 PTPRN-797-805 122 8149 3 HomoSapiens PTPRN MVWESGCTV Naive T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*02:01 B2M MHCI -12439 chip0514_131281 15.6 12.22 Chip3 T1D_8 T1D _ 6746 2174 EBV-BRLF1 EBV 0.94 1264 EBV-BRLF1 112 2062 12 EBV BRLF1 YVLDHLIVV effector T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*02:01 B2M MHCI -12440 chip0514_76617 0.27 8.63 Chip3 T1D_7 T1D TGCAGTGCTAGATACCTTCGGGGGACTCAGAATGAGCAGTTCTTC CSARYLRGTQNEQFF TRBV20-1*01 TRBJ2-1*01 22.0 712.0 _CSARYLRGTQNEQFF 1 9075 PGT-178 PGT 0.79 1480 PGT-178 113 8962 4 HomoSapiens PGT LLAGIGTVPI Naive T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*02:01 B2M MHCI -12441 chip0514_21504 13.77 13.03 Chip3 T1D_7 T1D TGTGCCAGCAGTTCCCTATCGGGAAGCGGTCAGCCCCAGCATTTT CASSSLSGSGQPQHF TRBV28*01 TRBJ1-5*01 20.0 777.0 _CASSSLSGSGQPQHF 23 3349 EBV-BRLF1 EBV 0.97 1264 EBV-BRLF1 130 3219 12 EBV BRLF1 YVLDHLIVV effector T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*02:01 B2M MHCI -12442 chip0514_116483 -0.78 8.89 Chip3 T1D_7 T1D TGCAGTGTCGTAGGACTAGATCCCGGGGAGCTGTTTTTT CSVVGLDPGELFF TRBV20-1*01 TRBJ2-2*01 47.0 2634.0 _CSVVGLDPGELFF 1 7253 PGT-178 PGT 0.7 1480 PGT-178 115 7138 4 HomoSapiens PGT LLAGIGTVPI Naive T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*02:01 B2M MHCI -12443 chip0514_404737 -4.84 9.51 Chip3 T1D_7 T1D TGTGCTGTCCTCCCGGGGGGTGCTACAACCAAGCTCATCTTT CAVLPGGATTKLIF TRAV1-2*01 TRAJ32*01 8.0 563.0 CAVLPGGATTKLIF_ 1 6582 ZNT8-273-282 ZNT8 0.85 8 ZNT8-273-282 121 6461 2 HomoSapiens ZNT8 LLMEGVPKSL Naive T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*02:01 B2M MHCI -12444 chip0514_804540 -3.51 13.26 Chip3 T1D_7 T1D TGTCCACTTGGTACGGGAGGAAGTCACGTATATCTCATCTTT CPLGTGGSHVYLIF TRAV25*01 TRAJ42*01 2.0 68.0 CPLGTGGSHVYLIF_ 1 3575 MART1-ALA MART1 0.5 269 NEG 105 3470 1 HomoSapiens MART1 ALAGIGILTV Naive T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*02:01 B2M MHCI -12445 chip0514_315116 8.63 9.91 Chip3 T1D_7 T1D TGTGCTGTCCTTATGGATAGCAACTATCAGTTAATCTGG CAVLMDSNYQLIW TRAV21*01 TRAJ33*01 14.0 648.0 TGCGCCAGCAGTGAGGATGGAATGAACACTGAAGCTTTCTTT CASSEDGMNTEAFF TRBV10-2*01 TRBJ1-1*01 52.0 2272.0 CAVLMDSNYQLIW_CASSEDGMNTEAFF 6 8033 EBV-LMP2A EBV 0.93 700 EBV-LMP2A 128 7905 8 EBV LMP2A CLGGLLTMV effector memory T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*02:01 B2M MHCI -12446 chip0514_162037 -3.57 13.25 Chip3 T1D_7 T1D TGTGCAATGAGAGAGGCCCTTGAAGGCGGATCTGAAAAGCTGGTCTTT CAMREALEGGSEKLVF TRAV14/DV4*01 TRAJ57*01 41.0 1418.0 CAMREALEGGSEKLVF_ 1 4716 ROTA-VP3 ROTA 0.67 41 NEG 128 4588 1 RotavirusA VP3 YLLPGWKL Naive T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*02:01 B2M MHCI -12447 chip0514_384125 10.48 10.77 Chip3 T1D_7 T1D TGTGCTGTGACACCACACGCCAGACTCATGTTT CAVTPHARLMF TRAV3*01 TRAJ31*01 3.0 88.0 TGTGCCAGCAGTTTATCGGTTAGCGAATTCTACAATGAGCAGTTCTTC CASSLSVSEFYNEQFF TRBV27*01 TRBJ2-1*01 33.0 1328.0 CAVTPHARLMF_CASSLSVSEFYNEQFF 1 5061 EBV-BRLF1 EBV 0.98 1264 EBV-BRLF1 142 4919 9 EBV BRLF1 YVLDHLIVV effector memory T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*02:01 B2M MHCI -12448 chip0514_99959 -1.96 11.17 Chip3 T1D_7 T1D _ 6746 5658 POL-132-140 HIV 0.83 37 NEG 103 5555 3 HIV-1 POL LVGPTPVNI Naive T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*02:01 B2M MHCI -12449 chip0514_537695 15.82 12.02 Chip3 T1D_7 T1D TGTGCCGTGAAGGACACCGACAAGCTCATCTTT CAVKDTDKLIF TRAV8-1*01 TRAJ34*01 15.0 1272.0 TGTGCCAGTAGCCCCCTGCTGGGGAGCAATCAGCCCCAGCATTTT CASSPLLGSNQPQHF TRBV19*01 TRBJ1-5*01 11.0 644.0 CAVKDTDKLIF_CASSPLLGSNQPQHF 3 2853 EBV-BRLF1 EBV 1.0 1264 EBV-BRLF1 111 2742 12 EBV BRLF1 YVLDHLIVV effector T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*02:01 B2M MHCI -12450 chip0514_634522 -1.97 9.34 Chip3 T1D_7 T1D TGTGCAATGAGTATATCTAACTTTGGAAATGAGAAATTAACCTTT CAMSISNFGNEKLTF TRAV12-3*01 TRAJ48*01 30.0 1247.0 TGCGCCAGCAGTTCCCCCGACACCGTGAACACTGAAGCTTTCTTT CASSSPDTVNTEAFF TRBV5-1*01 TRBJ1-1*01 4.0 96.0 CAMSISNFGNEKLTF_CASSSPDTVNTEAFF 1 6802 PGT-178 PGT 0.77 1480 PGT-178 107 6695 3 HomoSapiens PGT LLAGIGTVPI Naive T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*02:01 B2M MHCI -12451 chip0514_10993 -1.2 10.5 Chip3 T1D_7 T1D TGCGCAATCGGAATATCTAACTTTGGAAATGAGAAATTAACCTTT CAIGISNFGNEKLTF TRAV12-3*01 TRAJ48*01 16.0 558.0 TGTGCCAGCAGCAACACGCAAGTATCCGGGACTAGCGGGGGCTACGAGCAGTACTTC CASSNTQVSGTSGGYEQYF TRBV7-8*01 TRBJ2-7*01 4.0 248.0 CAIGISNFGNEKLTF_CASSNTQVSGTSGGYEQYF 1 5828 PGT-178 PGT 0.96 1480 PGT-178 102 5726 3 HomoSapiens PGT LLAGIGTVPI Naive T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*02:01 B2M MHCI -12452 chip0514_655762 -3.12 14.34 Chip3 T1D_7 T1D TGTGCAATGAGCAAATCTAACTTTGGAAATGAGAAATTAACCTTT CAMSKSNFGNEKLTF TRAV12-3*01 TRAJ48*01 50.0 1721.0 CAMSKSNFGNEKLTF_ 1 3338 PGT-178 PGT 0.88 1480 PGT-178 95 3243 1 HomoSapiens PGT LLAGIGTVPI Naive T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*02:01 B2M MHCI -12453 chip0514_37184 -2.7 9.0 Chip3 T1D_7 T1D GTTGCTGGTGGTACTAGCTATGGAAAGCTGACATTT VAGGTSYGKLTF TRAV27*01 TRAJ52*01 4.0 145.0 TGTGCCAGCAGTGGTGGGGCAGGGGGCGCTTGGTATGGCTACACCTTC CASSGGAGGAWYGYTF TRBV2*01 TRBJ1-2*01 23.0 1225.0 VAGGTSYGKLTF_CASSGGAGGAWYGYTF 1 6538 GP160-311-320 HIV 0.72 109 GP160-311-320 121 6417 2 HIV-1 GP160 RGPGRAFVTI Naive T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*02:01 B2M MHCI -12454 chip0514_230946 -3.48 7.61 Chip3 T1D_7 T1D TGTGCCAGCAGCCGGGGACAGGGTTCCTACGAGCAGTACTTC CASSRGQGSYEQYF TRBV7-9*01 TRBJ2-7*01 1.0 29.0 _CASSRGQGSYEQYF 1 9122 ADH-79-88 ADH 0.78 15 ADH-79-88 110 9012 2 HomoSapiens ADH RQFGPDWIVA Naive T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*02:01 B2M MHCI -12455 chip0514_105303 -2.72 14.82 Chip3 T1D_7 T1D TGTGCAATGACCCTAGCCAACTTTGGCCCCGCTGGCTTAGCCTTT CAMTLANFGPAGLAF TRAV12-3*01 TRAJ48*01 4.0 27.0 TGTGCGCTGAGCCTATGTAAGTTTTAAAACGAGAAATTAACATTG CALSLCKF*NEKLTL TRAV12-3*01 TRAJ48*01 4.0 335.0 0.31 CAMTLANFGPAGLAF_ 1 4118 PGT-178 PGT 0.88 1480 PGT-178 135 3983 1 HomoSapiens PGT LLAGIGTVPI Naive T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*02:01 B2M MHCI -12456 chip0514_822747 -4.08 9.2 Chip3 T1D_8 T1D CGCGCAACACGCGAATCTGGGGGTTCCCTGCACGTTTCCTTT RATRESGGSLHVSF TRAV14/DV4*01,TRAV29/DV5*01 TRAJ13*01 2.0 76.0 TGTGCCAGCAGCTTGGAGGTAAAAGCCGGGGAGCTGTTTTTT CASSLEVKAGELFF TRBV5-4*01 TRBJ2-2*01 1.0 14.0 RATRESGGSLHVSF_CASSLEVKAGELFF 1 4603 HCVNS4B-1807-1816 HCV 0.95 74 HCVNS4B-1807-1816 96 4507 2 HCV NS4B LLFNILGGWV Naive T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*02:01 B2M MHCI -12457 chip0514_205930 10.76 12.05 Chip3 T1D_7 T1D TGTGCCAGCAGTTCCCTATCGGGAAGCGGTCAGCCCCAGCATTTT CASSSLSGSGQPQHF TRBV28*01 TRBJ1-5*01 22.0 1289.0 _CASSSLSGSGQPQHF 23 3982 EBV-BRLF1 EBV 0.93 1264 EBV-BRLF1 103 3879 11 EBV BRLF1 YVLDHLIVV effector T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*02:01 B2M MHCI -12458 chip0514_881738 9.28 11.67 Chip3 T1D_8 T1D _ 6746 4091 EBV-LMP2-FLY EBV 0.93 355 EBV-LMP2-FLY 111 3980 9 EBV LMP2 FLYALALLL effector memory T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*02:01 B2M MHCI -12459 chip0514_215477 -3.98 11.79 Chip3 T1D_7 T1D _ 6746 5194 MART1-ALA MART1 0.52 269 MART1-ALA 111 5083 1 HomoSapiens MART1 ALAGIGILTV Naive T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*02:01 B2M MHCI -12460 chip0514_201630 13.6 11.11 Chip3 T1D_7 T1D TGTGCCACCAGTGGCTGGCAGGGTTCGGAAGAGACCCAGTACTTC CATSGWQGSEETQYF TRBV24-1*01 TRBJ2-5*01 15.0 694.0 _CATSGWQGSEETQYF 6 5228 EBV-BRLF1 EBV 0.93 1264 EBV-BRLF1 111 5117 7 EBV BRLF1 YVLDHLIVV transitional T cells between effector and memory populations PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*02:01 B2M MHCI -12461 chip0514_868530 -2.55 10.31 Chip3 T1D_7 T1D _ 6746 5476 ZNT8-16-24 ZNT8 0.74 39 NEG 101 5375 3 HomoSapiens ZNT8 KMYAFTLES Naive T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*02:01 B2M MHCI -12462 chip0514_545223 5.36 9.51 Chip3 T1D_7 T1D TGTGCCAGCAGTTTACAGGGAGGCAATACGCAGTATTTT CASSLQGGNTQYF TRBV6-5*01 TRBJ2-3*01 3.0 35.0 _CASSLQGGNTQYF 2 4490 EBV-LMP2-FLY EBV 0.81 355 EBV-LMP2-FLY 102 4388 6 EBV LMP2 FLYALALLL central memory T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*02:01 B2M MHCI -12463 chip0514_105862 -3.82 12.57 Chip3 T1D_7 T1D TGTGCTACGGACGCGAACGACTACAAGCTCAGCTTT CATDANDYKLSF TRAV17*01 TRAJ20*01 12.0 885.0 TGTGCCAGCAGCTTAGGAGAGGGAGGGACCGGGGAGCTGTTTTTT CASSLGEGGTGELFF TRBV7-9*01 TRBJ2-2*01 8.0 346.0 CATDANDYKLSF_CASSLGEGGTGELFF 1 4642 CVB3-P3A CVB 0.71 77 NEG 127 4515 1 CoxsackievirusB P3A GIIYIIYKL Naive T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*02:01 B2M MHCI -12464 chip0514_383394 12.59 8.17 Chip3 T1D_7 T1D TGCAGCGTTGAAGATTCATTGGCTAGCGGGAGTTTAAATGAGCAGTTCTTC CSVEDSLASGSLNEQFF TRBV29-1*01 TRBJ2-1*01 29.0 1223.0 _CSVEDSLASGSLNEQFF 1 4004 EBV-BLMF1 EBV 0.9 2531 NEG 145 3859 10 EBV BLMF1 GLCTLVAML effector memory T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*02:01 B2M MHCI -12465 chip0514_288068 9.62 13.22 Chip3 T1D_8 T1D TGTGTGGGTACAAGGTCAGGAGGAAGCTACATACCTACATTT CVGTRSGGSYIPTF TRAV12-1*01 TRAJ6*01 16.0 815.0 CVGTRSGGSYIPTF_ 3 2178 EBV-LMP1-2 EBV 0.86 41 EBV-LMP1-2 105 2073 6 EBV LMP1 YLQQNWWTL central memory T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*02:01 B2M MHCI -12466 chip0514_600046 -4.45 8.54 Chip3 T1D_7 T1D TGTGCTTATTTTGGAGGAAGCCAAGGCAATCTCATCTTT CAYFGGSQGNLIF TRAV38-1*01 TRAJ42*01 2.0 41.0 CTGTGCCAGCAGCTACCCGGGACAGGGCGTCTGGGAGCAGTACTTC LCQQLPGac??agGVWEQYF TRBV5-4*01 TRBJ2-7*01 2.0 119.0 CAYFGGSQGNLIF_LCQQLPGac??agGVWEQYF 1 6628 ZNT8-16-24 ZNT8 0.64 39 NEG 121 6507 2 HomoSapiens ZNT8 KMYAFTLES Naive T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*02:01 B2M MHCI -12467 chip0514_20807 -3.56 8.4 Chip3 tet_neg TGTGCCTGGAGTGTTGGGGGACTACACAATGAGCAGTTCTTC CAWSVGGLHNEQFF TRBV30*01 TRBJ2-1*01 24.0 1107.0 _CAWSVGGLHNEQFF 1 8525 PGT-178 PGT 0.84 1480 PGT-178 118 8407 2 HomoSapiens PGT LLAGIGTVPI Naive T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*02:01 B2M MHCI -12468 chip0514_191959 9.67 12.05 Chip3 T1D_7 T1D _ 6746 3524 EBV-BRLF1 EBV 0.97 1264 EBV-BRLF1 115 3409 7 EBV BRLF1 YVLDHLIVV transitional T cells between effector and memory populations PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*02:01 B2M MHCI -12469 chip0514_481970 -1.32 11.48 Chip3 T1D_7 T1D TGTGCAATGAGCGCATCTAACTCTGGAAATGAGAAATTAACCTTT CAMSASNSGNEKLTF TRAV12-3*01 TRAJ48*01 1.0 25.0 CAMSASNSGNEKLTF_ 1 5368 PGT-178 PGT 0.76 1480 PGT-178 111 5257 3 HomoSapiens PGT LLAGIGTVPI Naive T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*02:01 B2M MHCI -12470 chip0514_808223 -1.06 9.39 Chip3 T1D_7 T1D TGTGCCAGCAGCTTGCCGGGACAGACGTACGATAGACAGTACTTC CASSLPGQTYDRQYF TRBV7-9*01 TRBJ2-7*01 28.0 1397.0 _CASSLPGQTYDRQYF 1 5293 GP160-311-320 HIV 0.76 109 GP160-311-320 108 5185 4 HIV-1 GP160 RGPGRAFVTI Naive T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*02:01 B2M MHCI -12471 chip0514_460646 -4.47 8.84 Chip3 T1D_7 T1D TGTGCCAGCAGCTTAGAGGTAGCGTCTCCCGGGGAGCTGTTTTTT CASSLEVASPGELFF TRBV7-8*01 TRBJ2-2*01 9.0 378.0 _CASSLEVASPGELFF 1 5886 HCVNS3-1073-1081 HCV 0.86 36 HCVNS3-1073-1081 96 5790 2 HCV NS3 CINGVCWTV Naive T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*02:01 B2M MHCI -12472 chip0514_316804 -2.11 12.35 Chip3 T1D_7 T1D TGTGCAATGAGCTTATCTAACTTTGGAAATGAGAAATTAACCTTT CAMSLSNFGNEKLTF TRAV12-3*01 TRAJ48*01 1.0 40.0 TGCGCCAGCAGCTCCGGCGTTAGCGGGGCCCAAGGGTTTGATGAGCAGTTCTTC CASSSGVSGAQGFDEQFF TRBV5-1*01 TRBJ2-1*01 46.0 2233.0 CAMSLSNFGNEKLTF_CASSSGVSGAQGFDEQFF 1 4924 PGT-178 PGT 0.89 1480 NEG 103 4821 4 HomoSapiens PGT LLAGIGTVPI Naive T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*02:01 B2M MHCI -12473 chip0514_379039 -3.92 12.74 Chip3 T1D_7 T1D _ 6746 3952 PGT-178 PGT 0.93 1480 NEG 97 3855 1 HomoSapiens PGT LLAGIGTVPI Naive T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*02:01 B2M MHCI -12474 chip0514_374704 -3.84 11.54 Chip3 T1D_7 T1D TGTGCACTGAGCTTGAGCACCTTTGGAAATGAGAAATTAACCTTT CALSLSTFGNEKLTF TRAV12-3*01 TRAJ48*01 17.0 642.0 TGTGCCTGGAGTACCAGACTAGCGGGGGTCCCCTACGAGCAGTACTTC CAWSTRLAGVPYEQYF TRBV30*01 TRBJ2-7*01 8.0 422.0 CALSLSTFGNEKLTF_CAWSTRLAGVPYEQYF 1 4870 PGT-178 PGT 0.81 1480 PGT-178 97 4773 2 HomoSapiens PGT LLAGIGTVPI Naive T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*02:01 B2M MHCI -12475 chip0514_830985 -2.61 13.66 Chip3 T1D_8 T1D TGTGCCAGCAGCTTTTCCGGGGAGCTGTTTTTT CASSFSGELFF TRBV7-9*01 TRBJ2-2*01 16.0 1085.0 _CASSFSGELFF 1 2927 GP160-311-320 HIV 0.87 109 GP160-311-320 105 2822 1 HIV-1 GP160 RGPGRAFVTI Naive T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*02:01 B2M MHCI -12476 chip0514_493470 14.96 12.35 Chip3 T1D_7 T1D TGTGCCGTGCGTTCAGGATACAGCACCCTCACCTTT CAVRSGYSTLTF TRAV8-1*01 TRAJ11*01 7.0 539.0 TGTGCCAGCAGTTCCCTATCGGGTGGCGGTCAGCCCCGGCATTTT CASSSLSGGGQPRHF TRBV28*01 TRBJ1-5*01 7.0 490.0 CAVRSGYSTLTF_CASSSLSGGGQPRHF 1 4113 EBV-BRLF1 EBV 0.92 1264 EBV-BRLF1 107 4006 12 EBV BRLF1 YVLDHLIVV effector T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*02:01 B2M MHCI -12477 chip0514_465068 -4.27 11.49 Chip3 T1D_8 T1D TGTGCCGTTTCTGGGGTTTACCAGTCGGTTACCTTT CAVSGVYQSVTF TRAV12-2*01 TRAJ13*01 10.0 249.0 TGTGCCAGCAGCGGCCGGGACAGGGGCTACAATGAGCAGTTCTTC CASSGRDRGYNEQFF TRBV14*01 TRBJ2-1*01 22.0 768.0 CAVSGVYQSVTF_CASSGRDRGYNEQFF 1 4513 PGT-178 PGT 0.8 1480 NEG 112 4401 1 HomoSapiens PGT LLAGIGTVPI Naive T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*02:01 B2M MHCI -12478 chip0514_222733 14.81 8.62 Chip3 T1D_7 T1D TGTGTGGTGAACTTAACGGGTCAAGAGATGCGCTTT CVVNLTGQEMRF TRAV12-1*01 TRAJ43*01 5.0 400.0 TGTGCCAGCAGCTTATCCCTACAGGGGGCAGGAGAGACCCAGTACTTC CASSLSLQGAGETQYF TRBV11-1*01 TRBJ2-5*01 12.0 557.0 CVVNLTGQEMRF_CASSLSLQGAGETQYF 1 3797 EBV-BRLF1 EBV 0.9 1264 EBV-BRLF1 151 3646 12 EBV BRLF1 YVLDHLIVV effector T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*02:01 B2M MHCI -12479 chip0514_148442 -4.34 10.07 Chip3 T1D_8 T1D TGCAGTGCTAGAGTACAGGGGGCTTGGGAGACCCAGTACTTC CSARVQGAWETQYF TRBV20-1*01 TRBJ2-5*01 24.0 1203.0 _CSARVQGAWETQYF 1 4226 GP160-311-320 HIV 0.93 109 NEG 109 4117 2 HIV-1 GP160 RGPGRAFVTI Naive T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*02:01 B2M MHCI -12480 chip0514_545523 -4.57 10.85 Chip3 T1D_7 T1D TGTGCCGCAGGAGGAAGCTACATACCTACATTT CAAGGSYIPTF TRAV12-1*01 TRAJ6*01 6.0 435.0 TGTGCCAGCAGTTATGAGCAGGGAGGCCAAGAGACCCAGTACTTC CASSYEQGGQETQYF TRBV6-5*01 TRBJ2-5*01 19.0 692.0 CAAGGSYIPTF_CASSYEQGGQETQYF 1 5845 MART1-ALA MART1 0.74 269 NEG 104 5741 1 HomoSapiens MART1 ALAGIGILTV Naive T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*02:01 B2M MHCI -12481 chip0514_295682 5.12 9.58 Chip3 T1D_8 T1D TGTGCAGGGACGACGGAGGATAGCAACTATCAGTTAATCTGG CAGTTEDSNYQLIW TRAV25*01 TRAJ33*01 5.0 195.0 CAGTTEDSNYQLIW_ 1 4541 EBV-LMP2A EBV 0.95 700 EBV-LMP2A 107 4434 6 EBV LMP2A CLGGLLTMV central memory T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*02:01 B2M MHCI -12482 chip0514_357653 -4.58 10.71 Chip3 T1D_7 T1D _ 6746 6569 EBV-BRLF1 EBV 1.0 1264 EBV-BRLF1 125 6444 2 EBV BRLF1 YVLDHLIVV Naive T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*02:01 B2M MHCI -12483 chip0514_493225 -4.58 7.19 Chip3 T1D_7 T1D TGTGCCGTGAACGGGGATAGCAGCTATAAATTGATCTTC CAVNGDSSYKLIF TRAV12-2*01 TRAJ12*01 7.0 282.0 TGTGCCAGCAGCCAGGGTAACATTCAGTACTTC CASSQGNIQYF TRBV3-1*01 TRBJ2-4*01 24.0 1639.0 CAVNGDSSYKLIF_CASSQGNIQYF 1 4527 MART1-ALA MART1 0.71 269 NEG 93 4434 2 HomoSapiens MART1 ALAGIGILTV Naive T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*02:01 B2M MHCI -12484 chip0514_821782 -1.98 12.62 Chip3 T1D_7 T1D _ 6746 4806 PGT-178 PGT 0.57 1480 PGT-178 115 4691 1 HomoSapiens PGT LLAGIGTVPI Naive T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*02:01 B2M MHCI -12485 chip0514_242393 10.52 13.69 Chip3 T1D_8 T1D TGTGCCGTGACAGACACCGACAAGCTCATCTTT CAVTDTDKLIF TRAV8-1*01 TRAJ34*01 1.0 21.0 CAVTDTDKLIF_ 1 2273 EBV-BRLF1 EBV 1.0 1264 EBV-BRLF1 94 2179 11 EBV BRLF1 YVLDHLIVV effector T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*02:01 B2M MHCI -12486 chip0514_698152 -0.3 8.19 Chip3 T1D_7 T1D TGTGCCAGCAGCTCGTCAGGTCAAGAGACCCAGTACTTC CASSSSGQETQYF TRBV5-6*01 TRBJ2-5*01 15.0 633.0 _CASSSSGQETQYF 1 7416 PTPRN-797-805 PTPRN 0.93 12 PTPRN-797-805 99 7317 4 HomoSapiens PTPRN MVWESGCTV Naive T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*02:01 B2M MHCI -12487 chip0514_745410 -0.34 4.41 Chip3 T1D_7 T1D TGTGCCAGCAGCCCCGCACCGGAAACGGGTAATGAACGACTGTTTTTT CASSPAPETGNERLFF TRBV13*01 TRBJ1-4*01 3.0 174.0 _CASSPAPETGNERLFF 1 5377 HCV-L2I HCV 0.62 9 NEG 112 5265 5 HCV POL KIVALGINAV natural killer-like T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*02:01 B2M MHCI -12488 chip0514_694948 13.47 13.09 Chip3 T1D_8 T1D TGCAGCGTGGGGACAGGGGGCACTAATGAAAAACTGTTTTTT CSVGTGGTNEKLFF TRBV29-1*01 TRBJ1-4*01 59.0 2521.0 _CSVGTGGTNEKLFF 638 2141 EBV-BLMF1 EBV 0.88 2531 NEG 122 2019 12 EBV BLMF1 GLCTLVAML effector T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*02:01 B2M MHCI -12489 chip0514_736670 14.88 8.65 Chip3 T1D_7 T1D TGTGCCAGCAGCCACTCTTTGCGGGGGGGTGGAGAGACCCAGTACTTC CASSHSLRGGGETQYF TRBV3-1*01 TRBJ2-5*01 8.0 665.0 _CASSHSLRGGGETQYF 1 3483 EBV-BRLF1 EBV 1.0 1264 EBV-BRLF1 106 3377 12 EBV BRLF1 YVLDHLIVV effector T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*02:01 B2M MHCI -12490 chip0514_810582 10.63 7.43 Chip3 T1D_7 T1D TGTGCTGTCCTTATGGATAGCAACTATCAGTTAATCTGG CAVLMDSNYQLIW TRAV21*01 TRAJ33*01 19.0 955.0 TGTGTTGTGAAAGACCAGGATACAGCACCCTCACCTTT CVVKDQg?aYSTLTF TRAV8-2*01 TRAJ11*01 17.0 973.0 0.44 TGCGCCAGCAGTGAGGATGGAATGAACACTGAAGCTTTCTTT CASSEDGMNTEAFF TRBV10-2*01 TRBJ1-1*01 85.0 2099.0 CAVLMDSNYQLIW_CASSEDGMNTEAFF 6 8743 EBV-LMP2A EBV 0.95 700 EBV-LMP2A 99 8644 10 EBV LMP2A CLGGLLTMV effector memory T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*02:01 B2M MHCI -12491 chip0514_457199 12.77 6.75 Chip3 T1D_7 T1D TGTGTGGTGAGCCATACTGGAGGCTTCAAAACTATCTTT CVVSHTGGFKTIF TRAV12-1*01 TRAJ9*01 15.0 661.0 CVVSHTGGFKTIF_ 1 6305 HCV-K1Y HCV 0.41 15 NEG 115 6190 10 HCV POL YLVALGINAV effector memory T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*02:01 B2M MHCI -12492 chip0514_490898 8.9 11.64 Chip3 T1D_7 T1D TGTGCCAGCTCTGGGGGACAGAAGGCCCCCGGGGAGCTGTTTTTT CASSGGQKAPGELFF TRBV2*01 TRBJ2-2*01 26.0 927.0 _CASSGGQKAPGELFF 1 4304 EBV-BLMF1 EBV 0.71 2531 EBV-BLMF1 97 4207 7 EBV BLMF1 GLCTLVAML transitional T cells between effector and memory populations PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*02:01 B2M MHCI -12493 chip0514_123570 -2.29 13.78 Chip3 T1D_7 T1D TGTGCTCTGAGTGAGGCGTCTAACGACTACACGCTCAGCTTT CALSEASNDYTLSF TRAV19*01 TRAJ20*01 1.0 20.0 CALSEASNDYTLSF_ 1 4222 PGT-178 PGT 0.83 1480 PGT-178 102 4120 1 HomoSapiens PGT LLAGIGTVPI Naive T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*02:01 B2M MHCI -12494 chip0514_376080 0.3 8.99 Chip3 T1D_7 T1D TGTGCAATGAGCGAATCTAACTTTGGAAATGAGAAATTAACCTTT CAMSESNFGNEKLTF TRAV12-3*01 TRAJ48*01 10.0 266.0 CAMSESNFGNEKLTF_ 1 4947 PGT-178 PGT 0.62 1480 NEG 107 4840 4 HomoSapiens PGT LLAGIGTVPI Naive T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*02:01 B2M MHCI -12495 chip0514_312526 7.88 12.01 Chip3 T1D_7 T1D TGTGCTGTCCATACTGGAGGCTTCAAAACTATCTTT CAVHTGGFKTIF TRAV20*01 TRAJ9*01 5.0 154.0 CAVHTGGFKTIF_ 1 4850 EBV-BRLF1 EBV 0.96 1264 EBV-BRLF1 113 4737 7 EBV BRLF1 YVLDHLIVV transitional T cells between effector and memory populations PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*02:01 B2M MHCI -12496 chip0514_121153 13.62 13.62 Chip3 T1D_7 T1D TGTGCCACCCGAGTTTACCTCTCTAATGAGCAGTTCTTC CATRVYLSNEQFF TRBV28*01 TRBJ2-1*01 36.0 2352.0 _CATRVYLSNEQFF 1 1470 EBV-BRLF1 EBV 1.0 1264 EBV-BRLF1 110 1360 11 EBV BRLF1 YVLDHLIVV effector T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*02:01 B2M MHCI -12497 chip0514_781840 -3.16 13.8 Chip3 T1D_7 T1D TGTGCAATGACTCGATCTAACTTTGGAAATGAGAAATTAACCTTT CAMTRSNFGNEKLTF TRAV12-3*01 TRAJ48*01 24.0 1108.0 TGTGCCTGCTTGGACACCCTCTCTGGAAACACCATATATTTT CACLDTLSGNTIYF TRBV30*01 TRBJ1-3*01 1.0 20.0 CAMTRSNFGNEKLTF_CACLDTLSGNTIYF 1 3768 PGT-178 PGT 0.74 1480 PGT-178 109 3659 1 HomoSapiens PGT LLAGIGTVPI Naive T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*02:01 B2M MHCI -12498 chip0514_484600 -4.58 9.55 Chip3 T1D_8 T1D TGTGCAATGAGTGTATCTAACTTTGGAAATGAGAAATTAACCTTT CAMSVSNFGNEKLTF TRAV12-3*01 TRAJ48*01 40.0 1564.0 TGTGCCAGCAGCCAAGCGACCTTTCTACGGGACACTGAAGCTTTCTTT CASSQATFLRDTEAFF TRBV3-1*01 TRBJ1-1*01 45.0 2045.0 CAMSVSNFGNEKLTF_CASSQATFLRDTEAFF 1 4117 PGT-178 PGT 0.73 1480 PGT-178 97 4020 2 HomoSapiens PGT LLAGIGTVPI Naive T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*02:01 B2M MHCI -12499 chip0514_403686 5.72 10.04 Chip3 T1D_7 T1D TGTGCCAGCAGCCAAGATTCGAGTGAAGCTTTCTTT CASSQDSSEAFF TRAV20*01 TRAJ40*01 3.0 10.0 TGCGCTGTGAGAGATCGGATACTGGAGGCTTCAAAACTATCTTT CAVRDRIc?tGGFKTIF TRAV1-1*01 TRAJ9*01 9.0 293.0 0.75 TGTGCCAGCAGCCAAGATTCGAGTGAAGCTTTCTTT CASSQDSSEAFF TRBV4-2*01 TRBJ1-1*01 60.0 3015.0 CASSQDSSEAFF_CASSQDSSEAFF 1 5197 EBV-LMP1-2 EBV 0.89 41 EBV-LMP1-2 95 5102 6 EBV LMP1 YLQQNWWTL central memory T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*02:01 B2M MHCI -12500 chip0514_375029 -2.7 13.57 Chip3 T1D_8 T1D _ 6746 3320 POL-132-140 HIV 0.98 37 POL-132-140 105 3215 1 HIV-1 POL LVGPTPVNI Naive T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*02:01 B2M MHCI -12501 chip0514_340602 14.94 8.7 Chip3 T1D_7 T1D TGTGCTACGGTCGGCTCTTCAGGATACAGCACCCTCACCTTT CATVGSSGYSTLTF TRAV17*01 TRAJ11*01 17.0 849.0 TGTGCCAGCACCGCGCAGGGGGGCAACATTCAGTACTTC CASTAQGGNIQYF TRBV6-1*01 TRBJ2-4*01 37.0 1862.0 CATVGSSGYSTLTF_CASTAQGGNIQYF 2 3744 EBV-LMP2-FLY EBV 0.76 355 NEG 112 3632 12 EBV LMP2 FLYALALLL effector T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*02:01 B2M MHCI -12502 chip0514_806405 12.81 8.57 Chip3 T1D_7 T1D TGTGCCAGCAGTTTGCTACAGGGGGCGGCGGAGACCCAGTACTTC CASSLLQGAAETQYF TRBV28*01 TRBJ2-5*01 9.0 564.0 _CASSLLQGAAETQYF 2 3413 EBV-BRLF1 EBV 0.98 1264 EBV-BRLF1 99 3314 10 EBV BRLF1 YVLDHLIVV effector memory T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*02:01 B2M MHCI -12503 chip0514_273241 6.12 12.35 Chip3 T1D_7 T1D TGTGCCGTGGGCGATGACAAGATCATCTTT CAVGDDKIIF TRAV12-2*01 TRAJ30*01 2.0 131.0 TGTGCCAGCAGTAGCTCTAGCGGAGCCTCCTACGAGCAGTACTTC CASSSSSGASYEQYF TRBV6-1*01 TRBJ2-7*01 1.0 33.0 CAVGDDKIIF_CASSSSSGASYEQYF 1 5097 MART1-A28L MART1 0.97 84 MART1-A28L 112 4985 7 HomoSapiens MART1 ALGIGILTV transitional T cells between effector and memory populations PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*02:01 B2M MHCI -12504 chip0514_682383 5.17 9.45 Chip3 T1D_8 T1D TGTGCAGGCAGGAGGGAGGAGGAAGCCAAGGGAATCTCCTCTCT CAGRREEg?aSQGNLLS TRAV25*01 TRAJ42*01 2.0 48.0 CAGRREEg?aSQGNLLS_ 1 4121 EBV-LMP2A EBV 0.83 700 EBV-LMP2A 79 4042 6 EBV LMP2A CLGGLLTMV central memory T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*02:01 B2M MHCI -12505 chip0514_822575 0.07 9.09 Chip3 T1D_7 T1D TGTGCCAGCAGTCTACAGGGAAGGTACGAGCAGTACTTC CASSLQGRYEQYF TRBV28*01 TRBJ2-7*01 2.0 32.0 _CASSLQGRYEQYF 1 6068 CVB3-P3A CVB 0.92 77 CVB3-P3A 109 5959 4 CoxsackievirusB P3A GIIYIIYKL Naive T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*02:01 B2M MHCI -12506 chip0514_865305 -3.08 14.03 Chip3 T1D_8 T1D TGCATCGTCAGAGTGCCCGACGGGTTCTGCACGGCAACTGACCTTT CIVRVPDgg??gtSARQLTF TRAV26-1*01 TRAJ22*01 41.0 2060.0 CIVRVPDgg??gtSARQLTF_ 1 2624 PGT-178 PGT 0.88 1480 PGT-178 88 2536 1 HomoSapiens PGT LLAGIGTVPI Naive T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*02:01 B2M MHCI -12507 chip0514_116638 -3.64 8.03 Chip3 T1D_8 T1D TGTGCAATGAGCGCAATGGGAGGAGGTGCTGACGGACTCACCTTT CAMSAMGGGADGLTF TRAV12-3*01 TRAJ45*01 29.0 1409.0 TGTGCCAGCAGCTTAGCCTCCCCCTCCCTACTCCTAGCGGGAGATGGTAGTGAGCAGTTCTTC CASSLASPSLLLAGDGSEQFF TRBV7-8*01 TRBJ2-1*01 13.0 548.0 CAMSAMGGGADGLTF_CASSLASPSLLLAGDGSEQFF 1 5599 PGT-178 PGT 0.98 1480 PGT-178 100 5499 2 HomoSapiens PGT LLAGIGTVPI Naive T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*02:01 B2M MHCI -12508 chip0514_650373 5.7 13.03 Chip3 T1D_7 T1D _ 6746 7522 M1 FLU 0.92 1250 M1 104 7418 7 InfluenzaA M1 GILGFVFTL transitional T cells between effector and memory populations PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*02:01 B2M MHCI -12509 chip0514_146962 -2.12 15.94 Chip3 T1D_7 T1D TGTGCAACGGGAGGAGGTGCTGACGGACTCACCTTT CATGGGADGLTF TRAV12-3*01 TRAJ45*01 21.0 1629.0 TGTGCAATGAGCGAGGGCCCCCTGTTAGTCACTGCACGCACCCTGCTCACCTTT CAMSEGPLLVTARTLLTF TRAV14/DV4*01 TRAJ39*01 17.0 739.0 0.27 CATGGGADGLTF_ 2 1149 PGT-178 PGT 0.78 1480 NEG 91 1058 1 HomoSapiens PGT LLAGIGTVPI Naive T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*02:01 B2M MHCI -12510 chip0514_860528 -2.86 14.52 Chip3 T1D_7 T1D TGTGCTGTGAGTCTCGATTCTGGGGGTTACCAGAAAGTTACCTTT CAVSLDSGGYQKVTF TRAV3*01 TRAJ13*01 1.0 30.0 TGTGCCAGTAGTATAGCGGGCGGCCTGCACAATGGCTACACCTTC CASSIAGGLHNGYTF TRBV19*01 TRBJ1-2*01 10.0 543.0 CAVSLDSGGYQKVTF_CASSIAGGLHNGYTF 1 4034 IGRP-211-219 IGRP 0.5 13 NEG 99 3935 1 HomoSapiens IGRP NLFLFLFAV Naive T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*02:01 B2M MHCI -12511 chip0514_827710 14.41 12.82 Chip3 T1D_7 T1D _ 6746 2333 EBV-BRLF1 EBV 0.95 1264 EBV-BRLF1 107 2226 12 EBV BRLF1 YVLDHLIVV effector T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*02:01 B2M MHCI -12512 chip0514_663864 12.17 7.06 Chip3 T1D_7 T1D TGTGCCAGCAGTCGACAGGGCGGAAACATTCAGTACTTC CASSRQGGNIQYF TRBV6-1*01 TRBJ2-4*01 24.0 768.0 _CASSRQGGNIQYF 1 6296 EBV-LMP2-FLY EBV 0.91 355 EBV-LMP2-FLY 108 6188 10 EBV LMP2 FLYALALLL effector memory T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*02:01 B2M MHCI -12513 chip0514_249595 12.33 13.21 Chip3 T1D_7 T1D TGTGCTGTACTCATGGATAGCAACTATCAGTTAATCTGG CAVLMDSNYQLIW TRAV21*01 TRAJ33*01 9.0 358.0 TGCGCCAGCAGTGCCGACGGAATGAACACTGAAGCTTTCTTT CASSADGMNTEAFF TRBV10-2*01 TRBJ1-1*01 13.0 299.0 CAVLMDSNYQLIW_CASSADGMNTEAFF 1 2589 EBV-LMP2A EBV 0.68 700 EBV-LMP2A 94 2495 11 EBV LMP2A CLGGLLTMV effector T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*02:01 B2M MHCI -12514 chip0514_380591 -2.56 14.67 Chip3 T1D_7 T1D _ 6746 3182 PGT-178 PGT 0.96 1480 PGT-178 87 3095 1 HomoSapiens PGT LLAGIGTVPI Naive T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*02:01 B2M MHCI -12515 chip0514_756830 13.21 10.95 Chip3 T1D_7 T1D TGTGCCGTGAAGGACACCGACAAGCTCACCTTT CAVKDTDKLTF TRAV8-1*01 TRAJ34*01 1.0 129.0 TGCAGTGCTACAGACAGTACCTACAATGAGCAGTTCTTC CSATDSTYNEQFF TRBV20-1*01 TRBJ2-1*01 44.0 2722.0 CAVKDTDKLTF_CSATDSTYNEQFF 1 3083 EBV-BRLF1 EBV 0.92 1264 EBV-BRLF1 96 2987 9 EBV BRLF1 YVLDHLIVV effector memory T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*02:01 B2M MHCI -12516 chip0514_422551 10.81 11.65 Chip3 T1D_7 T1D TGTGCCATCAGGGGGGGGGACGAAGCCTACGAGCAGTACTTC CAIRGGDEAYEQYF TRBV10-3*01 TRBJ2-7*01 7.0 325.0 _CAIRGGDEAYEQYF 1 3967 EBV-BRLF1 EBV 0.93 1264 EBV-BRLF1 100 3867 9 EBV BRLF1 YVLDHLIVV effector memory T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*02:01 B2M MHCI -12517 chip0514_381995 12.54 8.79 Chip3 T1D_8 T1D TGTGCCGTGGAAGGCACCGACAAGCTCATCTTT CAVEGTDKLIF TRAV8-1*01 TRAJ34*01 2.0 63.0 TGTGCCAGCGGGGAACTTATCAATGAGCAGTTCTTC CASGELINEQFF TRBV3-1*01 TRBJ2-1*01 37.0 3240.0 CAVEGTDKLIF_CASGELINEQFF 1 3485 EBV-BRLF1 EBV 0.9 1264 EBV-BRLF1 94 3391 10 EBV BRLF1 YVLDHLIVV effector memory T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*02:01 B2M MHCI -12518 chip0514_284488 -2.85 12.05 Chip3 T1D_8 T1D TGTGCTTTCACCCAACGGCTTTCTGCTCGAGGTGCTGCCGGCCTCACCTTT CAFTQRLSARGAAGLTF TRAV38-1*01 TRAJ45*01 9.0 378.0 TGTGCCAGCAGTTCAGGGGGGCGGACGAATAAGTACGGGGAGCTGTTTTTT CASSSGGRTNKYGELFF TRBV28*01 TRBJ2-2*01 12.0 415.0 CAFTQRLSARGAAGLTF_CASSSGGRTNKYGELFF 1 4035 HCVNS4B-1807-1816 HCV 0.94 74 HCVNS4B-1807-1816 93 3942 1 HCV NS4B LLFNILGGWV Naive T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*02:01 B2M MHCI -12519 chip0514_493629 12.96 7.83 Chip3 T1D_7 T1D TGTGCTGTCCTCCTGGATAGCAACTATCAGTTAATCTGG CAVLLDSNYQLIW TRAV12-3*01 TRAJ33*01 12.0 351.0 TGCGCCAGCAGTGAGGACGGGATGAACACTGAAGCTTTCTTT CASSEDGMNTEAFF TRBV10-2*01 TRBJ1-1*01 10.0 367.0 CAVLLDSNYQLIW_CASSEDGMNTEAFF 4 4512 EBV-LMP2A EBV 0.83 700 EBV-LMP2A 87 4425 10 EBV LMP2A CLGGLLTMV effector memory T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*02:01 B2M MHCI -12520 chip0514_153950 11.18 12.87 Chip3 T1D_7 T1D _ 6746 3495 EBV-LMP2-FLY EBV 0.88 355 EBV-LMP2-FLY 86 3409 11 EBV LMP2 FLYALALLL effector T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*02:01 B2M MHCI -12521 chip0514_417162 7.34 13.89 Chip3 T1D_8 T1D TGTGCAATGAGAGGAGATGCTGGTGGTACTAGCTATGGAAAGCTGACATTT CAMRGDAGGTSYGKLTF TRAV14/DV4*01 TRAJ52*01 3.0 144.0 CAMRGDAGGTSYGKLTF_ 1 3152 M1 FLU 0.92 1250 M1 84 3068 7 InfluenzaA M1 GILGFVFTL transitional T cells between effector and memory populations PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*02:01 B2M MHCI -12522 chip0514_427746 11.37 8.9 Chip3 T1D_7 T1D _ 6746 5131 EBV-BRLF1 EBV 0.97 1264 EBV-BRLF1 111 5020 10 EBV BRLF1 YVLDHLIVV effector memory T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*02:01 B2M MHCI -12523 chip0514_745599 -0.12 8.79 Chip3 T1D_7 T1D TGCGCCAGCAAGGCAGGGGACCCCGGGGAGCTGTTTTTT CASKAGDPGELFF TRBV5-1*01 TRBJ2-2*01 3.0 64.0 _CASKAGDPGELFF 1 5476 PGT-178 PGT 0.66 1480 PGT-178 75 5401 4 HomoSapiens PGT LLAGIGTVPI Naive T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*02:01 B2M MHCI -12524 chip0514_234711 -2.43 15.42 Chip3 T1D_7 T1D TGTGCACCCGGGGGGGGCAGGAGAGCACTTACTTTT CAPGGGRRALTF TRAV12-3*01 TRAJ5*01 16.0 743.0 TGTGCCAGCAGTGACGGACAGGGGTCGAATGAGCAGTTCTTC CASSDGQGSNEQFF TRBV6-1*01 TRBJ2-1*01 19.0 865.0 CAPGGGRRALTF_CASSDGQGSNEQFF 1 1931 PGT-178 PGT 0.61 1480 NEG 112 1819 1 HomoSapiens PGT LLAGIGTVPI Naive T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*02:01 B2M MHCI -12525 chip0514_235045 8.91 13.74 Chip3 T1D_8 T1D TGTGCCAGTAGTATCAGTTCCACCGGGGAGCTGTTTTTT CASSISSTGELFF TRBV19*01 TRBJ2-2*01 9.0 579.0 _CASSISSTGELFF 1 2501 EBV-BRLF1 EBV 0.84 1264 EBV-BRLF1 99 2402 11 EBV BRLF1 YVLDHLIVV effector T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*02:01 B2M MHCI -12526 chip0514_404774 -4.36 8.32 Chip3 T1D_7 T1D TGCGCCAGCAGTCAATCGGGGGAACCCTAGCAATCAGCCCCAGCATTTT CASSQSGE??cPSNQPQHF TRBV4-3*01 TRBJ1-5*01 46.0 2132.0 _CASSQSGE??cPSNQPQHF 1 6789 ROTA-VP3 ROTA 0.78 41 NEG 101 6688 2 RotavirusA VP3 YLLPGWKL Naive T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*02:01 B2M MHCI -12527 chip0514_297188 11.6 6.86 Chip3 T1D_8 T1D TGTGTGGGTACAAGGTCAGGAGGAAGCTACATACCTACATTT CVGTRSGGSYIPTF TRAV12-1*01 TRAJ6*01 26.0 1097.0 CVGTRSGGSYIPTF_ 3 5200 EBV-LMP1-2 EBV 0.93 41 EBV-LMP1-2 104 5096 10 EBV LMP1 YLQQNWWTL effector memory T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*02:01 B2M MHCI -12528 chip0514_690591 16.04 10.19 Chip3 T1D_7 T1D TGTGCCGTGAAAGACACCGACAAGCTCATCTTT CAVKDTDKLIF TRAV8-1*01 TRAJ34*01 25.0 2176.0 TGTGCCAGCAGTTTATACTCTCAGGAGCAGTACTTC CASSLYSQEQYF TRBV28*01 TRBJ2-7*01 13.0 572.0 CAVKDTDKLIF_CASSLYSQEQYF 1 3597 EBV-BRLF1 EBV 0.95 1264 EBV-BRLF1 131 3466 12 EBV BRLF1 YVLDHLIVV effector T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*02:01 B2M MHCI -12529 chip0514_289478 -3.43 13.74 Chip3 T1D_7 T1D TGTGCCAGCAGCGGGTACACTGAAGCTTTCTTT CASSGYTEAFF TRAV38-1*01 TRAJ40*01 3.0 166.0 TGTGCCAGCAGCGGGTACACTGAAGCTTTCTTT CASSGYTEAFF TRBV7-9*01 TRBJ1-1*01 9.0 450.0 CASSGYTEAFF_CASSGYTEAFF 1 3609 GP160-311-320 HIV 0.98 109 GP160-311-320 103 3506 1 HIV-1 GP160 RGPGRAFVTI Naive T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*02:01 B2M MHCI -12530 chip0514_378636 -3.64 13.15 Chip3 T1D_8 T1D TGTGCTGTGCAGGCCGACAGCAAGGGCGGATCTGAAGAGCTGGTCTTT CAVQADSKGGSEELVF TRAV20*01 TRAJ57*01 15.0 515.0 TGTGCCAGCAGCTTAAATGGAAATCAGCCCCAGCATTTT CASSLNGNQPQHF TRBV7-6*01 TRBJ1-5*01 10.0 600.0 CAVQADSKGGSEELVF_CASSLNGNQPQHF 1 4019 ZNT8-16-24 ZNT8 1.0 39 NEG 99 3920 1 HomoSapiens ZNT8 KMYAFTLES Naive T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*02:01 B2M MHCI -12531 chip0514_347728 11.64 10.38 Chip3 T1D_7 T1D _ 6746 4517 EBV-BLMF1 EBV 0.93 2531 EBV-BLMF1 89 4428 9 EBV BLMF1 GLCTLVAML effector memory T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*02:01 B2M MHCI -12532 chip0514_133250 -4.99 9.85 Chip3 T1D_7 T1D TGTGCAATGAGTGGAGGTGGAGGAAGCCAAGGAAATCTCATCTTT CAMSGGGGSQGNLIF TRAV12-3*01 TRAJ42*01 17.0 434.0 TGCGCCAGCGGCGAAGACAATGAGCAGTTCTTC CASGEDNEQFF TRBV4-1*01 TRBJ2-1*01 9.0 466.0 CAMSGGGGSQGNLIF_CASGEDNEQFF 1 4944 PGT-178 PGT 0.83 1480 NEG 98 4846 2 HomoSapiens PGT LLAGIGTVPI Naive T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*02:01 B2M MHCI -12533 chip0514_790047 -4.53 9.79 Chip3 T1D_7 T1D TGTGCCAGCAGCTTGGACGATGGGCAGCCCCAGCATTTT CASSLDDGQPQHF TRBV11-3*01 TRBJ1-5*01 12.0 389.0 _CASSLDDGQPQHF 1 5419 PGT-178 PGT 0.74 1480 NEG 71 5348 2 HomoSapiens PGT LLAGIGTVPI Naive T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*02:01 B2M MHCI -12534 chip0514_490239 -2.23 13.04 Chip3 T1D_8 T1D _ 6746 3181 ZNT8-16-24 ZNT8 0.88 39 NEG 70 3111 1 HomoSapiens ZNT8 KMYAFTLES Naive T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*02:01 B2M MHCI -12535 chip0514_138742 15.35 10.45 Chip3 T1D_8 T1D TGTGCCAGCACTGGGCCCGGGGGCGAGGTCATGAACACTGAAGCTTTCTTT CASTGPGGEVMNTEAFF TRBV2*01 TRBJ1-1*01 1.0 88.0 _CASTGPGGEVMNTEAFF 1 3862 EBV-BRLF1 EBV 0.74 1264 EBV-BRLF1 89 3773 12 EBV BRLF1 YVLDHLIVV effector T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*02:01 B2M MHCI -12536 chip0514_318076 -1.47 10.86 Chip3 T1D_8 T1D _ 6746 4348 PTPRN-180-188 PTPRN 0.73 18 NEG 100 4248 3 HomoSapiens PTPRN LLPPLLEHL Naive T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*02:01 B2M MHCI -12537 chip0514_212249 -3.31 10.42 Chip3 T1D_7 T1D TGTGCCAGCAGCCAAGATATTTTGAAGGACAGGGGGGATGAAGGGACCCAGTACTTC CASSQDILKDRGDEGTQYF TRBV14*01 TRBJ2-5*01 7.0 166.0 _CASSQDILKDRGDEGTQYF 1 5216 PGT-178 PGT 0.69 1480 PGT-178 68 5148 2 HomoSapiens PGT LLAGIGTVPI Naive T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*02:01 B2M MHCI -12538 chip0514_440348 10.55 10.34 Chip3 T1D_7 T1D _ 6746 5576 EBV-LMP2A EBV 0.94 700 EBV-LMP2A 79 5497 9 EBV LMP2A CLGGLLTMV effector memory T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*02:01 B2M MHCI -12539 chip0514_39437 -5.01 9.79 Chip3 T1D_8 T1D TGTGCCGTGAACATAGGAGGTGCTGACGGACTCACCTTT CAVNIGGADGLTF TRAV12-2*01 TRAJ45*01 1.0 37.0 TGTGCCAGCAGCCCCCCGGGACTAGCGGCACAATGAGCAGTTCTTC CASSPPGct??agRHNEQFF TRBV7-8*01 TRBJ2-1*01 1.0 44.0 CAVNIGGADGLTF_CASSPPGct??agRHNEQFF 1 3574 PGT-178 PGT 0.6 1480 NEG 68 3506 2 HomoSapiens PGT LLAGIGTVPI Naive T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*02:01 B2M MHCI -12540 chip0514_400117 -2.73 13.0 Chip3 T1D_7 T1D _ 6746 4051 MART1-ALA MART1 0.81 269 MART1-ALA 99 3952 1 HomoSapiens MART1 ALAGIGILTV Naive T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*02:01 B2M MHCI -12541 chip0514_406802 12.83 8.41 Chip3 T1D_8 T1D TGTGCCAGCAGCCCCCTTAGTTCTGGGGCCAACGTCCTGACTTTC CASSPLSSGANVLTF TRBV3-1*01 TRBJ2-6*01 15.0 495.0 _CASSPLSSGANVLTF 1 2312 EBV-BRLF1 EBV 0.86 1264 NEG 80 2232 10 EBV BRLF1 YVLDHLIVV effector memory T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*02:01 B2M MHCI -12542 chip0514_642998 -2.89 14.5 Chip3 T1D_8 T1D TGTGCCAGCAGCTTTTCCGGGGAGCTGTTTCTT CASSFSGELFL TRBV7-9*01 TRBJ2-2*01 3.0 133.0 _CASSFSGELFL 1 3198 GP160-311-320 HIV 0.9 109 GP160-311-320 67 3131 1 HIV-1 GP160 RGPGRAFVTI Naive T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*02:01 B2M MHCI -12543 chip0514_400431 13.68 7.79 Chip3 T1D_8 T1D TGTGCCGTGAAAGACACCGACAAGCTCATCTTT CAVKDTDKLIF TRAV8-1*01 TRAJ34*01 1.0 13.0 TGTGCCAGCAGCCAAGTGGTCGGTGCCTATGGCTACACCTTC CASSQVVGAYGYTF TRBV3-1*01 TRBJ1-2*01 3.0 154.0 CAVKDTDKLIF_CASSQVVGAYGYTF 2 2994 EBV-BRLF1 EBV 0.96 1264 EBV-BRLF1 78 2916 10 EBV BRLF1 YVLDHLIVV effector memory T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*02:01 B2M MHCI -12544 chip0516_598431 12.95 6.19 Chip4 healthy_6 healthy TGTGCTGTTCTAATGGATAGCAACTATCAGTTAATCTGG CAVLMDSNYQLIW TRAV21*01 TRAJ33*01 23.0 1628.0 TGCGCCAGCAGCGGGGACGGAATGAACACTGAAGCTTTCTTT CASSGDGMNTEAFF TRBV10-2*01 TRBJ1-1*01 157.0 9569.0 CAVLMDSNYQLIW_CASSGDGMNTEAFF 20 10436 EBV-LMP2A EBV 1.0 700 EBV-LMP2A 744 9692 10 EBV LMP2A CLGGLLTMV effector memory T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*02:01 B2M MHCI -12545 chip0516_162136 12.94 6.24 Chip4 healthy_8 healthy TGCATCCTGCCCCTTGCTGGTGGTACTAGCTATGGAAAGCTGACATTT CILPLAGGTSYGKLTF TRAV26-2*01 TRAJ52*01 53.0 1434.0 TGTGCCAGCAGCTTAGGACAGGCCTACGAGCAGTACTTC CASSLGQAYEQYF TRBV7-8*01 TRBJ2-7*01 135.0 8036.0 CILPLAGGTSYGKLTF_CASSLGQAYEQYF 308 8784 EBNA3A-193-201 EBV 0.79 1022 EBNA3A-193-201 620 8164 10 EBV EBNA3A FLRGRAYGL effector memory T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-B*08:01 B2M MHCI -12546 chip0516_856229 13.37 6.61 Chip4 healthy_9 healthy TGCGCCAGCAGCCCATCGAATGGGGCCGGTGGCTACACCTTC CASSPSNGAGGYTF TRBV4-1*01 TRBJ1-2*01 7.0 272.0 _CASSPSNGAGGYTF 2 7606 BZLF1-190-197 EBV 0.85 2156 BZLF1-190-197 451 7155 10 EBV BZLF1 RAKFKQLL effector memory T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-B*08:01 B2M MHCI -12547 chip0516_66479 6.85 10.69 Chip4 tet_neg TGTGCTGTGATTATGCTGGTGGTACTAGCTATGGAAAGCTGACATTT CAVIMLVgt?TSYGKLTF TRAV8-4*01 TRAJ52*01 81.0 3920.0 TGTGCCAGCAGCTTGGAAGGAAACTATGGCTACACCTTC CASSLEGNYGYTF TRBV5-6*01 TRBJ1-2*01 38.0 3083.0 CAVIMLVgt?TSYGKLTF_CASSLEGNYGYTF 1 10966 NP140-148 FLU 0.44 102 NEG 335 10631 7 InfluenzaA NP HSNLNDATY transitional T cells between effector and memory populations PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*01:01 B2M MHCI -12548 chip0516_774272 12.87 6.18 Chip4 healthy_8 healthy TGCATCCTGCCCCTTGCTGGTGGTACTAGCTATGGAAAGCTGACATTT CILPLAGGTSYGKLTF TRAV26-2*01 TRAJ52*01 96.0 6204.0 TGTGCCAGCAGCTTAGGACAGGCCTACGAGCAGTACTTC CASSLGQAYEQYF TRBV7-8*01 TRBJ2-7*01 63.0 4514.0 CILPLAGGTSYGKLTF_CASSLGQAYEQYF 308 5802 EBNA3A-193-201 EBV 0.97 1022 EBNA3A-193-201 472 5330 10 EBV EBNA3A FLRGRAYGL effector memory T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-B*08:01 B2M MHCI -12549 chip0516_863825 13.94 7.15 Chip4 healthy_8 healthy TGCATCCTGCCCCTTGCTGGTGGTACTAGCTATGGAAAGCTGACATTT CILPLAGGTSYGKLTF TRAV26-2*01 TRAJ52*01 44.0 2280.0 TGTGCCAGCAGCTCCGGACAGGCCTACGAGCAGTACTTC CASSSGQAYEQYF TRBV7-8*01 TRBJ2-7*01 47.0 3184.0 CILPLAGGTSYGKLTF_CASSSGQAYEQYF 40 4186 EBNA3A-193-201 EBV 0.91 1022 EBNA3A-193-201 433 3753 10 EBV EBNA3A FLRGRAYGL effector memory T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-B*08:01 B2M MHCI -12550 chip0516_840118 12.98 6.22 Chip4 healthy_6 healthy TGCGCCAGCAGCGGGGACGGAATGAACACTGAAGCTTTCTTT CASSGDGMNTEAFF TRBV10-2*01 TRBJ1-1*01 77.0 3887.0 _CASSGDGMNTEAFF 131 7410 EBV-LMP2A EBV 0.85 700 EBV-LMP2A 371 7039 10 EBV LMP2A CLGGLLTMV effector memory T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*02:01 B2M MHCI -12551 chip0516_743696 10.97 6.33 Chip4 healthy_6 healthy TGTGCCGTGAGCGACACCGACAAGCTCATCTTT CAVSDTDKLIF TRAV8-1*01 TRAJ34*01 5.0 461.0 TGTGCCAGCAGCTCCTCCGCCCTAATCAGCGATGAGCAGTTCTTC CASSSSALISDEQFF TRBV11-2*01 TRBJ2-1*01 2.0 131.0 CAVSDTDKLIF_CASSSSALISDEQFF 1 9648 EBV-BRLF1 EBV 0.93 1264 EBV-BRLF1 366 9282 10 EBV BRLF1 YVLDHLIVV effector memory T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*02:01 B2M MHCI -12552 chip0516_44887 13.44 6.63 Chip4 healthy_8 healthy TGCATCCTGCCCCTTGCTGGTGGTACTAGCTATGGAAAGCTGACATTT CILPLAGGTSYGKLTF TRAV26-2*01 TRAJ52*01 38.0 1795.0 TGTGCCAGCAGCTTAGGACAGGCCTACGAGCAGTACTTC CASSLGQAYEQYF TRBV7-8*01 TRBJ2-7*01 99.0 6130.0 CILPLAGGTSYGKLTF_CASSLGQAYEQYF 308 6083 EBNA3A-193-201 EBV 0.76 1022 EBNA3A-193-201 300 5783 10 EBV EBNA3A FLRGRAYGL effector memory T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-B*08:01 B2M MHCI -12553 chip0516_2073 8.01 8.55 Chip4 healthy_8 healthy TGCATCCTGCCCCTTGCTGGTGGTACTAGCTATGGAAAGCTGACATTT CILPLAGGTSYGKLTF TRAV26-2*01 TRAJ52*01 73.0 4146.0 TGTGCCAGCAGCTCCGGACAGGCCTACGAGCAGTACTTC CASSSGQAYEQYF TRBV7-8*01 TRBJ2-7*01 10.0 702.0 CILPLAGGTSYGKLTF_CASSSGQAYEQYF 40 8710 EBNA3A-193-201 EBV 0.78 1022 EBNA3A-193-201 291 8419 8 EBV EBNA3A FLRGRAYGL effector memory T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-B*08:01 B2M MHCI -12554 chip0516_510651 12.88 6.22 Chip4 healthy_6 healthy TGTGCTGTTCTAATGGATAGCAACTATCAGTTAATCTGG CAVLMDSNYQLIW TRAV12-3*01 TRAJ33*01 16.0 1134.0 TGCGCCAGCAGCGGGGACGGAATGAACACTGAAGCTTTCTTT CASSGDGMNTEAFF TRBV10-2*01 TRBJ1-1*01 77.0 5177.0 CAVLMDSNYQLIW_CASSGDGMNTEAFF 20 9375 EBV-LMP2A EBV 1.0 700 EBV-LMP2A 361 9014 10 EBV LMP2A CLGGLLTMV effector memory T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*02:01 B2M MHCI -12555 chip0516_65796 -1.29 6.91 Chip4 healthy_8 healthy TGTGCTCTGAGCCCGCAGGTTTCAGATGGCCAGAAGCTGCTCTTT CALSPQVSDGQKLLF TRAV19*01 TRAJ16*01 64.0 3904.0 CALSPQVSDGQKLLF_ 1 6356 GAD2-VSA-10 GAD65 0.68 21 GAD2-VSA-10 230 6126 3 HomoSapiens GAD2 VSATAGTTVY Naive T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*01:01 B2M MHCI -12556 chip0516_506083 6.36 11.24 Chip4 healthy_10 healthy TGTGCCAGCAGCAGACTAAACAGGGGAAGCAACGAGCAGTACTTC CASSRLNRGSNEQYF TRBV5-5*01 TRBJ2-7*01 75.0 3366.0 _CASSRLNRGSNEQYF 1 5870 LMP2A-CPL EBV 0.78 44 LMP2A-CPL 251 5619 7 EBV LMP2A CPLSKILL transitional T cells between effector and memory populations PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-B*08:01 B2M MHCI -12557 chip0516_669471 -0.34 6.5 Chip4 tet_neg TGTGCAGAGTCCCCCGCTGCCAGACTCATGTTT CAESPAARLMF TRAV13-2*01 TRAJ31*01 11.0 1441.0 TGTGCCAGCAGTTCCGACGGGAATTCACCCCTCCACTTT CASSSDGNSPLHF TRBV6-5*01 TRBJ1-6*01 9.0 245.0 CAESPAARLMF_CASSSDGNSPLHF 1 10146 G6PC2-LTS-10 IGRP 0.82 59 G6PC2-LTS-10 267 9879 3 HomoSapiens G6PC2 LTSLTILQLY Naive T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*01:01 B2M MHCI -12558 chip0516_340663 13.98 7.41 Chip4 healthy_6 healthy TGTGCAATGAGAGAGCAGCGGGATAGCAACTATCAGTTAATCTGG CAMREQRDSNYQLIW TRAV14/DV4*01 TRAJ33*01 8.0 493.0 CAMREQRDSNYQLIW_ 1 6580 EBV-BLMF1 EBV 0.83 2531 NEG 288 6292 10 EBV BLMF1 GLCTLVAML effector memory T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*02:01 B2M MHCI -12559 chip0516_158480 13.15 6.8 Chip4 healthy_6 healthy TGTGCTGTGGCCCTCTCAAGCAAATCAACCTTT CAVALSSKSTF TRAV8-3*01 TRAJ27*01 9.0 571.0 TGCGCCAGCAGCGGGGACGGAATGAACACTGAAGCTTTCTTT CASSGDGMNTEAFF TRBV10-2*01 TRBJ1-1*01 4.0 79.0 CAVALSSKSTF_CASSGDGMNTEAFF 50 4617 EBV-LMP2A EBV 0.96 700 EBV-LMP2A 272 4345 10 EBV LMP2A CLGGLLTMV effector memory T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*02:01 B2M MHCI -12560 chip0516_180620 14.8 9.76 Chip4 healthy_8 healthy _ 6746 4452 ZNT8-YAK-9 ZNT8 0.42 59 ZNT8-YAK-9 235 4217 12 HomoSapiens ZNT8 YAKWKLCSA effector T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-B*08:01 B2M MHCI -12561 chip0516_122152 8.94 8.19 Chip4 tet_neg TGTGCCATGAAGGACTTTCAGAAACTTGTATTT CAMKDFQKLVF TRAV8-1*01 TRAJ8*01 2.0 12.0 TGTGCCAGCAGCTTCGCCCCATCGTACGAGCAGTACTTC CASSFAPSYEQYF TRBV13*01 TRBJ2-7*01 28.0 2053.0 CAMKDFQKLVF_CASSFAPSYEQYF 1 8994 EBV-BRLF1 EBV 0.82 1264 EBV-BRLF1 245 8749 8 EBV BRLF1 YVLDHLIVV effector memory T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*02:01 B2M MHCI -12562 chip0516_54755 8.5 7.7 Chip4 healthy_8 healthy TGCATCCTGCCCCTTGCTGGTGGTACTAGCTATGGAAAGCTGACATTT CILPLAGGTSYGKLTF TRAV26-2*01 TRAJ52*01 32.0 2024.0 TGTGCTGTGAGTGAAGGATGCACACAGGCTTTCAGAAACTTGTATTT CAVSEGCac?TGFQKLVF TRAV8-4*01 TRAJ8*01 36.0 1972.0 0.4 TGTGCCAGCTCCTATTTTGTGGGACAGGTGGTGAACACTGAAGCTTTCTTT CASSYFVGQVVNTEAFF TRBV6-2*01,TRBV6-3*01 TRBJ1-1*01 76.0 4174.0 CILPLAGGTSYGKLTF_CASSYFVGQVVNTEAFF 1 13294 EBNA3A-193-201 EBV 0.54 1022 EBNA3A-193-201 240 13054 8 EBV EBNA3A FLRGRAYGL effector memory T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-B*08:01 B2M MHCI -12563 chip0516_316663 5.78 12.54 Chip4 healthy_8 healthy TGTGCAATGAGAGATTCTACGGGAGGTAGCAACTATAAACTGACATTT CAMRDSTGGSNYKLTF TRAV14/DV4*01 TRAJ53*01 61.0 2709.0 TGTGCCAGTTCCTCCGTCCCAGATATGAACACTGAAGCTTTCTTT CASSSVPDMNTEAFF TRBV19*01 TRBJ1-1*01 13.0 865.0 CAMRDSTGGSNYKLTF_CASSSVPDMNTEAFF 5 7559 NP30-38 FLU 0.48 72 NP30-38 227 7332 7 InfluenzaA NP RPIIRPATL transitional T cells between effector and memory populations PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-B*08:01 B2M MHCI -12564 chip0516_754540 12.13 7.36 Chip4 healthy_8 healthy TGTGCCAGCAGCTTAGGACAGGCCTACGAGCAGTACTTC CASSLGQAYEQYF TRBV7-8*01 TRBJ2-7*01 6.0 149.0 _CASSLGQAYEQYF 175 5524 EBNA3A-193-201 EBV 0.93 1022 EBNA3A-193-201 218 5306 10 EBV EBNA3A FLRGRAYGL effector memory T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-B*08:01 B2M MHCI -12565 chip0516_195108 5.17 9.43 Chip4 healthy_7 healthy _ 6746 5296 EBV-LMP2-FLY EBV 0.95 355 EBV-LMP2-FLY 206 5090 6 EBV LMP2 FLYALALLL central memory T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*02:01 B2M MHCI -12566 chip0516_816913 12.95 6.22 Chip4 healthy_6 healthy TGTGCTGTTCTAATGGATAGCAACTATCAGTTAATCTGG CAVLMDSNYQLIW TRAV21*01 TRAJ33*01 7.0 329.0 TGCGCCAGCAGCGGGGACGGAATGAACACTGAAGCTTTCTTT CASSGDGMNTEAFF TRBV10-2*01 TRBJ1-1*01 43.0 2448.0 CAVLMDSNYQLIW_CASSGDGMNTEAFF 20 6664 EBV-LMP2A EBV 0.95 700 EBV-LMP2A 294 6370 10 EBV LMP2A CLGGLLTMV effector memory T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*02:01 B2M MHCI -12567 chip0516_789447 7.7 8.74 Chip4 tet_neg TGCCTCGTGGGTGACCGAGCAGGCAACATGCTCACCTTT CLVGDRAGNMLTF TRAV4*01 TRAJ39*01 15.0 1228.0 TGTGCCAGTCAGGGTTTTGGTAACACTGAAGCTTTCTTT CASQGFGNTEAFF TRBV9*01 TRBJ1-1*01 2.0 22.0 CLVGDRAGNMLTF_CASQGFGNTEAFF 1 14821 NP30-38 FLU 0.64 72 NP30-38 235 14586 8 InfluenzaA NP RPIIRPATL effector memory T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-B*08:01 B2M MHCI -12568 chip0516_110149 5.58 13.05 Chip4 healthy_8 healthy _ 6746 8251 NP30-38 FLU 0.8 72 NP30-38 201 8050 7 InfluenzaA NP RPIIRPATL transitional T cells between effector and memory populations PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-B*08:01 B2M MHCI -12569 chip0516_327828 -0.48 7.81 Chip4 healthy_10 healthy TGTGCAATGAGAGCATCCCTCGGGTATGCACTCAACTTC CAMRASLGYALNF TRAV14/DV4*01 TRAJ41*01 23.0 1195.0 TGCGCCAGCAGCCAAGGGGAAAGGACGTACAATGAGCAGTTCTTC CASSQGERTYNEQFF TRBV4-3*01 TRBJ2-1*01 35.0 2201.0 CAMRASLGYALNF_CASSQGERTYNEQFF 1 6462 GAD2-MMI-8 GAD65 0.62 40 GAD2-MMI-8 220 6242 4 HomoSapiens GAD2 MMIARFKM Naive T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-B*08:01 B2M MHCI -12570 chip0516_32804 6.45 9.4 Chip4 tet_neg TGTGCTGTGCAAGGGTTCAGAGATGACAAGATCATCTTT CAVQGFRDDKIIF TRAV20*01 TRAJ30*01 24.0 912.0 TGTGCCAGCAGTCCTAGGGCCAACACCGGGGAGCTGTTTTTT CASSPRANTGELFF TRBV27*01 TRBJ2-2*01 28.0 1967.0 CAVQGFRDDKIIF_CASSPRANTGELFF 1 13591 M1 FLU 0.67 1250 M1 248 13343 6 InfluenzaA M1 GILGFVFTL central memory T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*02:01 B2M MHCI -12571 chip0516_692213 12.28 6.08 Chip4 healthy_8 healthy TGCATCGTCAGAGAAAGTAACAATGACATGCGCTTT CIVRESNNDMRF TRAV26-1*01 TRAJ43*01 1.0 44.0 TGCGCCAGCAGCCTAACCGGGCCCGATAACACTGAAGCTTTCTTT CASSLTGPDNTEAFF TRBV4-1*01 TRBJ1-1*01 21.0 1412.0 CIVRESNNDMRF_CASSLTGPDNTEAFF 1 8858 BZLF1-190-197 EBV 0.73 2156 BZLF1-190-197 252 8606 10 EBV BZLF1 RAKFKQLL effector memory T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-B*08:01 B2M MHCI -12572 chip0516_516055 16.0 11.09 Chip4 healthy_6 healthy TGTGCCGTGAGATGAAAAGATCATCTTT CAVRtg??aaKIIF TRAV8-1*01 TRAJ30*01 3.0 451.0 TGTGCCAGCAGCTCGGGACAGGGGGACAATGAGCAGTTCTTC CASSSGQGDNEQFF TRBV11-2*01 TRBJ2-1*01 14.0 568.0 CAVRtg??aaKIIF_CASSSGQGDNEQFF 1 3704 EBV-BLMF1 EBV 0.67 2531 NEG 236 3468 12 EBV BLMF1 GLCTLVAML effector T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*02:01 B2M MHCI -12573 chip0516_246373 6.12 12.61 Chip4 healthy_7 healthy TGTGCCAGTAGTATTTTTAGCGTCAATGAGCAGTTCTTC CASSIFSVNEQFF TRBV19*01 TRBJ2-1*01 39.0 2262.0 _CASSIFSVNEQFF 1 6539 M1 FLU 0.95 1250 M1 250 6289 7 InfluenzaA M1 GILGFVFTL transitional T cells between effector and memory populations PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*02:01 B2M MHCI -12574 chip0516_708696 5.74 13.41 Chip4 healthy_7 healthy TGTGCAGGAGGGGGGTCTAGCAACACAGGCAAAACTAATCTT CAGGGSSNTGKTNL TRAV27*01 TRAJ37*01 1.0 11.0 TGTGCCAGTAGTATCCGGAGCTCCTACGAGCAGTACTTC CASSIRSSYEQYF TRBV19*01 TRBJ2-7*01 7.0 384.0 CAGGGSSNTGKTNL_CASSIRSSYEQYF 1 7853 M1 FLU 0.79 1250 M1 208 7645 7 InfluenzaA M1 GILGFVFTL transitional T cells between effector and memory populations PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*02:01 B2M MHCI -12575 chip0516_354554 8.56 7.7 Chip4 healthy_8 healthy TGCATCCTGCCCCTTGCTGGTGGTACTAGCTATGGAAAGCTGACATTT CILPLAGGTSYGKLTF TRAV26-2*01 TRAJ52*01 13.0 805.0 TGTGCCAGCAGCTCAGCCGGGGGGGTAGCGGGCGGTGAGCAGTTCTTC CASSSAGGVAGGEQFF TRBV7-9*01 TRBJ2-1*01 74.0 5288.0 CILPLAGGTSYGKLTF_CASSSAGGVAGGEQFF 1 10089 EBNA3A-193-201 EBV 0.67 1022 EBNA3A-193-201 248 9841 8 EBV EBNA3A FLRGRAYGL effector memory T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-B*08:01 B2M MHCI -12576 chip0516_364494 5.28 11.77 Chip4 healthy_8 healthy TGTGCTCTCCACCCCCCCACAGATGGCCAGAAGCTGCTCTTT CALHPPTDGQKLLF TRAV16*01 TRAJ16*01 21.0 2110.0 TGTGCTGTGGACCAAACTGGGGCAAACAACCTCTTCTTT CAVDQTGANNLFF TRAV8-4*01 TRAJ36*01 16.0 1200.0 0.36 TGCGCCAGCAGCTTGTCGCGTAGCTCCTATAATTCACCCCTCCACTTT CASSLSRSSYNSPLHF TRBV5-1*01 TRBJ1-6*01 2.0 109.0 CALHPPTDGQKLLF_CASSLSRSSYNSPLHF 1 7863 INS-MAL-8 INS 0.83 38 NEG 199 7664 6 HomoSapiens INS MALWMRLL central memory T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-B*08:01 B2M MHCI -12577 chip0516_530874 6.84 9.81 Chip4 tet_neg TGTGCCAGCAGTGATGCCGCAATCGCGAACACCGGGGAGCTGTTTTTT CASSDAAIANTGELFF TRBV2*01 TRBJ2-2*01 48.0 2397.0 _CASSDAAIANTGELFF 1 15478 EBNA3A-193-201 EBV 0.96 1022 EBNA3A-193-201 246 15232 7 EBV EBNA3A FLRGRAYGL transitional T cells between effector and memory populations PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-B*08:01 B2M MHCI -12578 chip0516_188377 -3.91 7.69 Chip4 healthy_9 healthy TGTGCCAGCAGCTTGAGGGCGGGAGGGCCTATAGATACGCAGTATTTT CASSLRAGGPIDTQYF TRBV5-4*01 TRBJ2-3*01 36.0 2062.0 _CASSLRAGGPIDTQYF 1 5695 NP140-148 FLU 0.81 102 NP140-148 194 5501 2 InfluenzaA NP HSNLNDATY Naive T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*01:01 B2M MHCI -12579 chip0516_166719 0.58 8.65 Chip4 healthy_9 healthy TATGCAGAGAATAATGGCCATGAAGGCAACATGGTCACCTTT YAENNGHEGNMVTF TRAV13-2*01 TRAJ39*01 11.0 86.0 TGTGCAGAGAATAATGGCAATGCAGGCAACATGCTCACC CAENNGNAGNMLT TRAV13-2*01 TRAJ39*01 10.0 1869.0 0.3 YAENNGHEGNMVTF_ 1 6844 GFAP-HLK-8 GFAP 0.74 28 GFAP-HLK-8 214 6630 4 HomoSapiens GFAP HLKRNIVV Naive T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-B*08:01 B2M MHCI -12580 chip0516_858318 7.93 8.37 Chip4 tet_neg TGCATCCTGCCCCTTGCTGGTGGTACTAGCTATGGAAAGCTGACATTT CILPLAGGTSYGKLTF TRAV26-2*01 TRAJ52*01 47.0 2433.0 TGTGCTTTCATGAAGGCCCCGTTTGGAAATGAGAAATTAACCTTT CAFMKAPFGNEKLTF TRAV38-1*01 TRAJ48*01 37.0 1750.0 0.39 TGTGCCAGCAGCTCCGGACAGGCCTACGAGCAGTACTTC CASSSGQAYEQYF TRBV7-8*01 TRBJ2-7*01 3.0 204.0 CILPLAGGTSYGKLTF_CASSSGQAYEQYF 40 16660 EBNA3A-193-201 EBV 0.92 1022 EBNA3A-193-201 217 16443 8 EBV EBNA3A FLRGRAYGL effector memory T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-B*08:01 B2M MHCI -12581 chip0516_793029 7.78 11.63 Chip4 healthy_8 healthy _ 6746 5370 ZNT8-YAY-8 ZNT8 0.95 54 ZNT8-YAY-8 184 5186 7 HomoSapiens ZNT8 YAYAKWKL transitional T cells between effector and memory populations PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-B*08:01 B2M MHCI -12582 chip0516_812659 5.65 12.02 Chip4 healthy_8 healthy TGTGCTCTGAGTGAGCAGGATAACCAGGGAGGAAAGCTTATCTTC CALSEQDNQGGKLIF TRAV19*01 TRAJ23*01 33.0 1973.0 TGTGCCAGCAGCCAAGAAGGCAGACCTATGGTGCAGTACTTC CASSQEGRPMVQYF TRBV14*01 TRBJ2-7*01 26.0 1378.0 CALSEQDNQGGKLIF_CASSQEGRPMVQYF 1 5946 GAD2-QQD-10 GAD65 0.76 7 GAD2-QQD-10 198 5748 7 HomoSapiens GAD2 QQDKHYDLSY transitional T cells between effector and memory populations PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*01:01 B2M MHCI -12583 chip0516_813364 5.82 12.82 Chip4 healthy_7 healthy TGTGCAGGGGGGCATGGAGGAAGCCAAGGAAATCTCATCTTT CAGGHGGSQGNLIF TRAV25*01 TRAJ42*01 26.0 1993.0 TGTGCAGCAAGCTATAACCAGGGAGGAAAGCTTATCTTC CAASYNQGGKLIF TRAV29/DV5*01 TRAJ23*01 23.0 2023.0 0.37 TGTGCCAGTAGTATAAGGAGCGTAGATACGCAGTATTTT CASSIRSVDTQYF TRBV19*01 TRBJ2-3*01 6.0 518.0 CAGGHGGSQGNLIF_CASSIRSVDTQYF 1 7035 M1 FLU 0.81 1250 M1 199 6836 7 InfluenzaA M1 GILGFVFTL transitional T cells between effector and memory populations PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*02:01 B2M MHCI -12584 chip0516_159662 5.8 13.24 Chip4 healthy_7 healthy _ 6746 7539 M1 FLU 0.94 1250 M1 187 7352 7 InfluenzaA M1 GILGFVFTL transitional T cells between effector and memory populations PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*02:01 B2M MHCI -12585 chip0516_438044 -0.32 7.47 Chip4 healthy_8 healthy TGTGCCAGCAGCGCCTGGACAGGGAGGACCGGGGAGCTGTTTTTT CASSAWTGRTGELFF TRBV7-9*01 TRBJ2-2*01 52.0 3303.0 _CASSAWTGRTGELFF 1 5895 LMP2A-CPL EBV 0.71 44 NEG 181 5714 3 EBV LMP2A CPLSKILL Naive T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-B*08:01 B2M MHCI -12586 chip0516_510762 13.4 6.79 Chip4 healthy_8 healthy TGTGCCAGCAGCACCCAGACAGCGCCTGATGATACGCAGTATTTT CASSTQTAPDDTQYF TRBV7-9*01 TRBJ2-3*01 43.0 2974.0 _CASSTQTAPDDTQYF 5 4534 BZLF1-190-197 EBV 0.64 2156 NEG 244 4290 10 EBV BZLF1 RAKFKQLL effector memory T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-B*08:01 B2M MHCI -12587 chip0516_622327 -0.1 7.21 Chip4 healthy_7 healthy TGTGCCAGCAGCCCCGCCGAACCTTCTGGCTACACCTTC CASSPAEPSGYTF TRBV5-6*01 TRBJ1-2*01 2.0 29.0 _CASSPAEPSGYTF 1 9098 PTPRN-797-805 PTPRN 0.86 12 PTPRN-797-805 189 8909 3 HomoSapiens PTPRN MVWESGCTV Naive T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*02:01 B2M MHCI -12588 chip0516_498707 12.55 10.98 Chip4 healthy_8 healthy TGTGCCAGCAGCTCCGGACAGGCCTACGAGCAGTACTTC CASSSGQAYEQYF TRBV7-8*01 TRBJ2-7*01 21.0 1523.0 _CASSSGQAYEQYF 49 3511 EBNA3A-193-201 EBV 0.84 1022 EBNA3A-193-201 209 3302 9 EBV EBNA3A FLRGRAYGL effector memory T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-B*08:01 B2M MHCI -12589 chip0516_794728 9.91 6.87 Chip4 healthy_6 healthy TGTGCTGTGGCCCTCTCAAGCAAATCAACCTTT CAVALSSKSTF TRAV8-3*01 TRAJ27*01 11.0 1208.0 CAVALSSKSTF_ 58 12334 EBV-LMP2A EBV 0.77 700 EBV-LMP2A 219 12115 10 EBV LMP2A CLGGLLTMV effector memory T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*02:01 B2M MHCI -12590 chip0516_105671 13.09 8.35 Chip4 healthy_6 healthy _ 6746 5047 EBV-LMP2A EBV 0.88 700 EBV-LMP2A 183 4864 10 EBV LMP2A CLGGLLTMV effector memory T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*02:01 B2M MHCI -12591 chip0516_136486 0.83 8.47 Chip4 healthy_8 healthy TGTGCAATGAGAGAGGGACCGGGGAGCAACTATCAGTTAATCTGG CAMREGPGSNYQLIW TRAV14/DV4*01 TRAJ33*01 43.0 2080.0 TGTGCCAGCAGTTTACTGGGGTTTGGGATGAACACTGAAGCTTTCTTT CASSLLGFGMNTEAFF TRBV27*01 TRBJ1-1*01 67.0 3647.0 CAMREGPGSNYQLIW_CASSLLGFGMNTEAFF 1 12683 ZNT8-YAK-9 ZNT8 0.67 59 NEG 218 12465 4 HomoSapiens ZNT8 YAKWKLCSA Naive T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-B*08:01 B2M MHCI -12592 chip0516_572771 14.08 9.7 Chip4 healthy_8 healthy TGTGCTCTGAGTGAGGAGATTTATAACCAGGGAGGAAAGCTTATCTTC CALSEEIYNQGGKLIF TRAV19*01 TRAJ23*01 63.0 1754.0 TGTGCCAGCAGCTTAGCCGGGACAGGCTACAATGAGCAGTTCTTC CASSLAGTGYNEQFF TRBV7-2*01 TRBJ2-1*01 42.0 1892.0 CALSEEIYNQGGKLIF_CASSLAGTGYNEQFF 2 9352 EBNA3A-158-166 EBV 0.59 444 EBNA3A-158-166 200 9152 12 EBV EBNA3A QAKWRLQTL effector T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-B*08:01 B2M MHCI -12593 chip0516_771874 9.59 7.96 Chip4 healthy_8 healthy _ 6746 4673 EBNA3A-193-201 EBV 0.86 1022 EBNA3A-193-201 211 4462 8 EBV EBNA3A FLRGRAYGL effector memory T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-B*08:01 B2M MHCI -12594 chip0516_467019 -1.76 10.02 Chip4 healthy_7 healthy TGTGCAATGAGAGAGTCTAATACTGGAGGCTTCAAAACTATCTTT CAMRESNTGGFKTIF TRAV14/DV4*01 TRAJ9*01 44.0 1287.0 TGTGCCAGCAGCCAAGTGTCGGGCTACGAGCAGTACTTC CASSQVSGYEQYF TRBV4-2*01 TRBJ2-7*01 37.0 2781.0 CAMRESNTGGFKTIF_CASSQVSGYEQYF 1 5338 HCVNS4B-1807-1816 HCV 0.88 74 HCVNS4B-1807-1816 205 5133 3 HCV NS4B LLFNILGGWV Naive T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*02:01 B2M MHCI -12595 chip0516_194383 10.38 6.91 Chip4 healthy_8 healthy TGTGCTGTGACCCTTACCCTCTCCTCTGGGGCTGGGCGTTACCTACTCACTTTC CAVTLTLSSGAGRYLLTF TRAV36/DV7*01 TRAJ28*01 9.0 574.0 TGTGCCAGCAGTTTAATGGGGACAGGGGGCTTGAGTGAAAAACTGTTTTTT CASSLMGTGGLSEKLFF TRBV28*01 TRBJ1-4*01 1.0 24.0 CAVTLTLSSGAGRYLLTF_CASSLMGTGGLSEKLFF 1 6929 EBNA3A-158-166 EBV 0.5 444 NEG 188 6741 10 EBV EBNA3A QAKWRLQTL effector memory T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-B*08:01 B2M MHCI -12596 chip0516_26929 0.71 8.79 Chip4 healthy_7 healthy TGTGCTTATTACTCGGGGGATTCCGGGTATGCACTCAACTTC CAYYSGDSGYALNF TRAV38-1*01 TRAJ41*01 38.0 2627.0 TGTGCCAGCTCACCCAGCAGACATCAGCCCCAGCATTTT CASSPSRHQPQHF TRBV11-2*01 TRBJ1-5*01 1.0 13.0 CAYYSGDSGYALNF_CASSPSRHQPQHF 1 5154 IAPP-5-13 IAPP 0.52 30 NEG 176 4978 4 HomoSapiens IAPP KLQVFLIVL Naive T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*02:01 B2M MHCI -12597 chip0516_867945 11.34 7.79 Chip4 healthy_8 healthy TGCCTCCTGCCCCTTGCTGGTGGTACTAGCTATGGAAAGCTGACATTT CLLPLAGGTSYGKLTF TRAV26-2*01,TRAV4*01 TRAJ52*01 8.0 316.0 TGTGCCAGCAGCTCCGGACAGGCCTACGAGCAGTACTTC CASSSGQAYEQYF TRBV7-8*01 TRBJ2-7*01 12.0 769.0 CLLPLAGGTSYGKLTF_CASSSGQAYEQYF 1 5717 EBNA3A-193-201 EBV 0.91 1022 EBNA3A-193-201 213 5504 10 EBV EBNA3A FLRGRAYGL effector memory T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-B*08:01 B2M MHCI -12598 chip0516_771624 -0.41 9.34 Chip4 healthy_10 healthy TGTGCTCTGAGTGAGGCCTATGGGAACAACAGACTCGCTTTT CALSEAYGNNRLAF TRAV19*01 TRAJ7*01 38.0 2023.0 TGTGCCAGCAGTGAAAGAACTAGCGGTGGATGGAATGAGCAGTTCTTC CASSERTSGGWNEQFF TRBV6-1*01 TRBJ2-1*01 36.0 1737.0 CALSEAYGNNRLAF_CASSERTSGGWNEQFF 1 6116 EBNA3A-158-166 EBV 0.96 444 EBNA3A-158-166 203 5913 3 EBV EBNA3A QAKWRLQTL Naive T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-B*08:01 B2M MHCI -12599 chip0516_624458 -0.56 7.03 Chip4 healthy_8 healthy TGTGCAATGAGAGAGTAAGCGACAGGAGGAGGTGCTGACGGACTCACCTTT CAMRE*ATGGGADGLTF TRAV14/DV4*01 TRAJ45*01 7.0 217.0 TGCAGTGCTAGAGTCGGTGCGGAAACAGGGGACGAGCCCACAGATACGCAGTATTTT CSARVGAETGDEPTDTQYF TRBV20-1*01 TRBJ2-3*01 34.0 1657.0 CAMRE*ATGGGADGLTF_CSARVGAETGDEPTDTQYF 1 9196 GAD2-SRK-8 GAD65 0.5 10 NEG 188 9008 3 HomoSapiens GAD2 SRKHKWKL Naive T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-B*08:01 B2M MHCI -12600 chip0516_25899 12.92 6.3 Chip4 healthy_8 healthy TGCATCCTGCCCCTTGCTGGTCGTACTCGCTATGGAAAGCTGACACTC CILPLAGRTRYGKLTL TRAV26-2*01 TRAJ52*01 6.0 422.0 TGTGCCAGCAGCTTAGGACAGGCCTACGAGCAGTACTTC CASSLGQAYEQYF TRBV7-8*01 TRBJ2-7*01 84.0 5620.0 CILPLAGRTRYGKLTL_CASSLGQAYEQYF 1 5573 EBNA3A-193-201 EBV 0.8 1022 EBNA3A-193-201 221 5352 10 EBV EBNA3A FLRGRAYGL effector memory T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-B*08:01 B2M MHCI -12601 chip0516_112549 12.4 6.25 Chip4 healthy_8 healthy TGTGCTGTGACCCTTACCCTCTACTCTGGGGCTGGGAGTTACCAACTCACTTTC CAVTLTLYSGAGSYQLTF TRAV21*01 TRAJ28*01 28.0 1550.0 TGTGCCAGCAGTTTAATGGGGACAGGGGGCTTGAGTGAAAAACTGTTTTTT CASSLMGTGGLSEKLFF TRBV28*01 TRBJ1-4*01 43.0 2271.0 CAVTLTLYSGAGSYQLTF_CASSLMGTGGLSEKLFF 19 7847 EBNA3A-158-166 EBV 0.66 444 EBNA3A-158-166 230 7617 10 EBV EBNA3A QAKWRLQTL effector memory T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-B*08:01 B2M MHCI -12602 chip0516_333509 7.95 8.75 Chip4 healthy_6 healthy TGCGCCAGCAGCGGGGACGGAATGAACACTGAAGCTTTCTTT CASSGDGMNTEAFF TRBV10-2*01 TRBJ1-1*01 29.0 1523.0 _CASSGDGMNTEAFF 131 11248 EBV-LMP2A EBV 0.93 700 EBV-LMP2A 192 11056 8 EBV LMP2A CLGGLLTMV effector memory T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*02:01 B2M MHCI -12603 chip0516_146408 0.29 8.13 Chip4 healthy_6 healthy TGTGCAATGGCTATATCTAACTTTGGAAATGAGAAATTAACCTTT CAMAISNFGNEKLTF TRAV12-3*01 TRAJ48*01 35.0 1812.0 TGTGCCAGCAGCAACCAGGGACAGGCGAAAGCTAACTATGGCTACACCTTC CASSNQGQAKANYGYTF TRBV11-2*01 TRBJ1-2*01 13.0 498.0 CAMAISNFGNEKLTF_CASSNQGQAKANYGYTF 1 9707 PGT-178 PGT 0.7 1480 PGT-178 204 9503 4 HomoSapiens PGT LLAGIGTVPI Naive T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*02:01 B2M MHCI -12604 chip0516_392686 5.55 11.18 Chip4 healthy_7 healthy TGTGCTTTCACGCATAATGCAGGCAACATGCTCACTTTT CAFTHNAGNMLTF TRAV38-1*01 TRAJ39*01 21.0 1663.0 TGTGCCAGCAGCTTAGTGTACAGCTCGATACAGACCCAGTACTTC CASSLVYSSIQTQYF TRBV7-9*01 TRBJ2-5*01 69.0 4122.0 CAFTHNAGNMLTF_CASSLVYSSIQTQYF 1 5133 HCVNS4B-1807-1816 HCV 0.65 74 NEG 187 4946 6 HCV NS4B LLFNILGGWV central memory T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*02:01 B2M MHCI -12605 chip0516_653998 -2.61 7.59 Chip4 healthy_8 healthy TGTGCTACCTATTCAGGAGGAGGTGCTGACGGACTCACCTTT CATYSGGGADGLTF TRAV21*01 TRAJ45*01 50.0 3766.0 TGCGCCAGCAGTTTGAGGGCCAATGAGCAGTTCTTC CASSLRANEQFF TRBV4-1*01 TRBJ2-1*01 11.0 1171.0 CATYSGGGADGLTF_CASSLRANEQFF 1 8433 GAD2-EAK-10 GAD65 0.6 14 GAD2-EAK-10 196 8237 2 HomoSapiens GAD2 EAKQKGFVPF Naive T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-B*08:01 B2M MHCI -12606 chip0516_420155 11.71 8.1 Chip4 healthy_8 healthy TGCATCCTGCCCCTTGCTGGTGGTACTAGCTATGGAAAGCTGACATTT CILPLAGGTSYGKLTF TRAV26-2*01 TRAJ52*01 5.0 112.0 TGTGCCAGCAGCTTAGGACAGGCCTACGAGCAGTACTTC CASSLGQAYEQYF TRBV7-8*01 TRBJ2-7*01 14.0 644.0 CILPLAGGTSYGKLTF_CASSLGQAYEQYF 308 5716 EBNA3A-193-201 EBV 0.68 1022 EBNA3A-193-201 209 5507 10 EBV EBNA3A FLRGRAYGL effector memory T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-B*08:01 B2M MHCI -12607 chip0516_807167 -3.86 10.15 Chip4 healthy_8 healthy TGTGCTGGGCAGCTGGGCAGCTGGGGGAAATTGCAGTTT CAGQLGSWGKLQF TRAV35*01 TRAJ24*01 1.0 97.0 TGTGCCATCAGCGGACGGAGCGGGGTCGACACCGGGGAGCTGTTTTTT CAISGRSGVDTGELFF TRBV10-3*01 TRBJ2-2*01 34.0 1456.0 CAGQLGSWGKLQF_CAISGRSGVDTGELFF 1 5346 IAPP-STN-9 IAPP 0.4 48 IAPP-STN-9 179 5167 2 HomoSapiens IAPP STNVGSNTY Naive T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*01:01 B2M MHCI -12608 chip0516_445245 6.77 11.06 Chip4 healthy_7 healthy _ 6746 6665 M1 FLU 0.95 1250 M1 195 6470 7 InfluenzaA M1 GILGFVFTL transitional T cells between effector and memory populations PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*02:01 B2M MHCI -12609 chip0516_329172 -2.44 7.37 Chip4 healthy_6 healthy TGTGCCGGGTATTCAGGAGGAGGTGCTGACGGACTCACCTTT CAGYSGGGADGLTF TRAV12-2*01 TRAJ45*01 8.0 298.0 CAGYSGGGADGLTF_ 1 10955 MART1-A28L MART1 0.73 84 NEG 176 10779 2 HomoSapiens MART1 ALGIGILTV Naive T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*02:01 B2M MHCI -12610 chip0516_24243 -0.36 7.17 Chip4 healthy_10 healthy TGTGCAGCAAGCGAAGGATATGGAAACAAACTGGTCTTT CAASEGYGNKLVF TRAV29/DV5*01 TRAJ47*01 27.0 1778.0 TGTGCCAGCAGTGGCTCAAGGCAAGAGACCCAGTACTTC CASSGSRQETQYF TRBV6-2*01,TRBV6-3*01 TRBJ2-5*01 34.0 2180.0 CAASEGYGNKLVF_CASSGSRQETQYF 1 7548 GAD2-TLK-8 GAD65 0.62 11 NEG 204 7344 3 HomoSapiens GAD2 TLKKMREI Naive T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-B*08:01 B2M MHCI -12611 chip0516_412026 -1.21 7.79 Chip4 healthy_7 healthy TGTGCCGCTTTAGATGACAAGATCATCTTT CAALDDKIIF TRAV12-2*01 TRAJ30*01 1.0 104.0 TGCAGTGCTAGTGTTCAGACTAGCGGCTTAGGGACCCAGTACTTC CSASVQTSGLGTQYF TRBV20-1*01 TRBJ2-5*01 12.0 954.0 CAALDDKIIF_CSASVQTSGLGTQYF 1 5516 PGT-178 PGT 0.86 1480 PGT-178 178 5338 4 HomoSapiens PGT LLAGIGTVPI Naive T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*02:01 B2M MHCI -12612 chip0516_503663 7.05 10.32 Chip4 healthy_8 healthy _ 6746 9743 EBNA3A-158-166 EBV 0.51 444 EBNA3A-158-166 198 9545 7 EBV EBNA3A QAKWRLQTL transitional T cells between effector and memory populations PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-B*08:01 B2M MHCI -12613 chip0516_508164 -1.18 8.6 Chip4 healthy_7 healthy TGTGCACCTCTTCCCGCTAACTTTGGAAATGAGAAATTAACCTTT CAPLPANFGNEKLTF TRAV12-3*01 TRAJ48*01 30.0 2105.0 TGCAGTGCTAGAGATAAGGAGGATGACTATGGCTACACCTTC CSARDKEDDYGYTF TRBV20-1*01 TRBJ1-2*01 39.0 2265.0 CAPLPANFGNEKLTF_CSARDKEDDYGYTF 1 6225 PGT-178 PGT 0.5 1480 NEG 185 6040 3 HomoSapiens PGT LLAGIGTVPI Naive T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*02:01 B2M MHCI -12614 chip0516_384954 -0.48 9.52 Chip4 healthy_10 healthy TGTGCCAGCAGCTCCTCGGGACAGAGCTATTCACCCCTCCACTTT CASSSSGQSYSPLHF TRBV5-6*01 TRBJ1-6*01 39.0 2444.0 _CASSSSGQSYSPLHF 1 5725 IAPP-MGI-9 IAPP 0.69 5 NEG 192 5533 3 HomoSapiens IAPP MGILKLQVF Naive T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-B*08:01 B2M MHCI -12615 chip0516_514098 9.04 8.17 Chip4 healthy_6 healthy _ 6746 10378 EBV-LMP2A EBV 1.0 700 EBV-LMP2A 235 10143 8 EBV LMP2A CLGGLLTMV effector memory T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*02:01 B2M MHCI -12616 chip0516_34623 5.55 13.08 Chip4 healthy_7 healthy TGTGCAGGAGCTCATGGCTCTAGCAACACAGGCAAACTAATCTTT CAGAHGSSNTGKLIF TRAV27*01 TRAJ37*01 1.0 24.0 TGTGCCAGTAGTAGCAGGAGCGCCTACGAGCAGTACTTC CASSSRSAYEQYF TRBV19*01 TRBJ2-7*01 8.0 393.0 CAGAHGSSNTGKLIF_CASSSRSAYEQYF 1 6711 M1 FLU 0.89 1250 M1 199 6512 7 InfluenzaA M1 GILGFVFTL transitional T cells between effector and memory populations PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*02:01 B2M MHCI -12617 chip0516_681217 -0.53 9.91 Chip4 healthy_7 healthy TGTGCCAGTAGTTCTTGGGGACTGATATACGAGCAGTACTTC CASSSWGLIYEQYF TRBV19*01 TRBJ2-7*01 12.0 596.0 _CASSSWGLIYEQYF 1 5192 IGRP-222-230 IGRP 1.0 10 IGRP-222-230 179 5013 3 HomoSapiens IGRP YLLLRVLNI Naive T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*02:01 B2M MHCI -12618 chip0516_271447 -3.14 9.12 Chip4 healthy_8 healthy TGTGCTCTGAATCGGGGTAACAATGCCAGACTCATGTTT CALNRGNNARLMF TRAV19*01 TRAJ31*01 5.0 305.0 TGTGCCAGTTGGGGGGGCACTGAAGCTTTCTTT CASWGGTEAFF TRBV19*01 TRBJ1-1*01 8.0 852.0 CALNRGNNARLMF_CASWGGTEAFF 1 5417 G6PC2-LTS-10 IGRP 0.93 59 G6PC2-LTS-10 179 5238 2 HomoSapiens G6PC2 LTSLTILQLY Naive T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*01:01 B2M MHCI -12619 chip0516_554605 14.39 9.97 Chip4 healthy_7 healthy TGTGCCGTGGGGACGCGCTTT CAVGTRF TRAV12-2*01 TRAJ43*01 1.0 33.0 CAVGTRF_ 7 6275 PGT-178 PGT 0.45 1480 PGT-178 155 6120 12 HomoSapiens PGT LLAGIGTVPI effector T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*02:01 B2M MHCI -12620 chip0516_653437 10.91 6.63 Chip4 healthy_8 healthy TGCATCCTGCCCCTTGCTGGTGGTACTAGCTATGGAAAGCTGACATTT CILPLAGGTSYGKLTF TRAV26-2*01 TRAJ52*01 6.0 143.0 TGTGCCAGCAGCTTAGGACAGGCCTACGAGCAGTACTTC CASSLGQAYEQYF TRBV7-8*01 TRBJ2-7*01 1.0 13.0 CILPLAGGTSYGKLTF_CASSLGQAYEQYF 308 9445 EBNA3A-193-201 EBV 0.82 1022 EBNA3A-193-201 216 9229 10 EBV EBNA3A FLRGRAYGL effector memory T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-B*08:01 B2M MHCI -12621 chip0516_434528 10.55 11.56 Chip4 healthy_6 healthy _ 6746 4647 EBV-LMP2A EBV 0.9 700 EBV-LMP2A 172 4475 9 EBV LMP2A CLGGLLTMV effector memory T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*02:01 B2M MHCI -12622 chip0516_180687 -2.83 8.51 Chip4 healthy_8 healthy TGTGCGGCGAGGCGATCTGGGGGTTACCAGAAAGTTACCTTT CAARRSGGYQKVTF TRAV13-1*01 TRAJ13*01 138.0 9261.0 TGTGCCATCAGTGACGACGGAAACACTGAAGCTTTCTTT CAISDDGNTEAFF TRBV10-3*01 TRBJ1-1*01 52.0 3392.0 CAARRSGGYQKVTF_CAISDDGNTEAFF 1 7782 ZNT8-YAY-8 ZNT8 0.83 54 ZNT8-YAY-8 204 7578 2 HomoSapiens ZNT8 YAYAKWKL Naive T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-B*08:01 B2M MHCI -12623 chip0516_768145 7.53 13.4 Chip4 healthy_7 healthy TGTGCCAGTAGTATCGGGGTCTATGGCTACACCTTC CASSIGVYGYTF TRBV19*01 TRBJ1-2*01 14.0 1027.0 _CASSIGVYGYTF 1 4049 M1 FLU 0.96 1250 M1 160 3889 7 InfluenzaA M1 GILGFVFTL transitional T cells between effector and memory populations PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*02:01 B2M MHCI -12624 chip0516_425965 9.24 9.43 Chip4 healthy_8 healthy TGCATCCTGCCCCTTGCTGGTGGTACTAGCTATGGAAAGCTGACATTT CILPLAGGTSYGKLTF TRAV26-2*01 TRAJ52*01 56.0 3262.0 CILPLAGGTSYGKLTF_ 55 5777 EBNA3A-193-201 EBV 0.73 1022 EBNA3A-193-201 175 5602 8 EBV EBNA3A FLRGRAYGL effector memory T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-B*08:01 B2M MHCI -12625 chip0516_407259 -2.82 8.7 Chip4 healthy_7 healthy TGTGCTGGAGGTGGGGGGTCCAGCACCCTCACCTTT CAGGGGSSTLTF TRAV27*01 TRAJ11*01 25.0 1203.0 CAGGGGSSTLTF_ 1 6597 IGRP-228-236 IGRP 0.98 16 IGRP-228-236 173 6424 2 HomoSapiens IGRP LNIDLLWSV Naive T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*02:01 B2M MHCI -12626 chip0516_308701 5.82 12.57 Chip4 healthy_8 healthy TGTGCAATGAGAGATTCTACGGGAGGTAGCAACTATAAACTGACATTT CAMRDSTGGSNYKLTF TRAV14/DV4*01 TRAJ53*01 53.0 2440.0 CAMRDSTGGSNYKLTF_ 1 7216 NP30-38 FLU 0.79 72 NP30-38 173 7043 7 InfluenzaA NP RPIIRPATL transitional T cells between effector and memory populations PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-B*08:01 B2M MHCI -12627 chip0516_456288 -3.99 9.58 Chip4 healthy_10 healthy TGCGGCACGGCCGATACTGGAGGCTTCAAAACTATCTTT CGTADTGGFKTIF TRAV30*01 TRAJ9*01 13.0 1329.0 TGTGCCAGCAGTATCAGGGGGCTCAGCTCCTACAATGAGCAGTTCTTC CASSIRGLSSYNEQFF TRBV28*01 TRBJ2-1*01 43.0 2317.0 CGTADTGGFKTIF_CASSIRGLSSYNEQFF 1 5386 ZNT8-YAK-9 ZNT8 0.86 59 ZNT8-YAK-9 181 5205 4 HomoSapiens ZNT8 YAKWKLCSA Naive T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-B*08:01 B2M MHCI -12628 chip0516_597052 -3.55 10.13 Chip4 healthy_8 healthy _ 6746 6858 Nef13-20 HIV 0.89 19 Nef13-20 162 6696 2 HIV-1 Nef WPTVRERM Naive T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-B*08:01 B2M MHCI -12629 chip0516_258145 6.58 10.17 Chip4 healthy_8 healthy TGCATCCTGCCCCTTGCTGGTGGTACTAGCTATGGAAAGCTGACATTT CILPLAGGTSYGKLTF TRAV26-2*01 TRAJ52*01 2.0 52.0 CILPLAGGTSYGKLTF_ 55 7290 EBNA3A-193-201 EBV 0.9 1022 EBNA3A-193-201 191 7099 6 EBV EBNA3A FLRGRAYGL central memory T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-B*08:01 B2M MHCI -12630 chip0516_848595 15.14 12.84 Chip4 healthy_8 healthy TGTGCCAGCAGCTTAGGCCAGGCCTACGAGCAGTACTTC CASSLGQAYEQYF TRBV7-8*01 TRBJ2-7*01 8.0 713.0 _CASSLGQAYEQYF 175 2312 EBNA3A-193-201 EBV 0.74 1022 EBNA3A-193-201 198 2114 12 EBV EBNA3A FLRGRAYGL effector T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-B*08:01 B2M MHCI -12631 chip0516_181296 5.72 13.4 Chip4 healthy_7 healthy TGTGCAGCGCCCGAGTCCGAGGGAGGAAAGCTTATCTTC CAAPESEGGKLIF TRAV23/DV6*01 TRAJ23*01 8.0 408.0 CAAPESEGGKLIF_ 1 7353 M1 FLU 0.84 1250 M1 161 7192 7 InfluenzaA M1 GILGFVFTL transitional T cells between effector and memory populations PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*02:01 B2M MHCI -12632 chip0516_712311 11.95 8.42 Chip4 healthy_8 healthy TGCATCCTGCCCCTTGCTGGTGGTACTAGCTATGGAAAGCTGACATTT CILPLAGGTSYGKLTF TRAV26-2*01 TRAJ52*01 58.0 3255.0 TGTGCCAGCAGCTTAGGACAGGCCTACGAGCAGTACTTC CASSLGQAYEQYF TRBV7-8*01 TRBJ2-7*01 2.0 54.0 CILPLAGGTSYGKLTF_CASSLGQAYEQYF 308 4131 EBNA3A-193-201 EBV 0.79 1022 EBNA3A-193-201 190 3941 10 EBV EBNA3A FLRGRAYGL effector memory T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-B*08:01 B2M MHCI -12633 chip0516_765064 9.77 9.94 Chip4 healthy_6 healthy TGTGCTGTTCTAATGGATAGCAACTATCAGTTAATCTGG CAVLMDSNYQLIW TRAV21*01 TRAJ33*01 35.0 2122.0 TGCGCCAGCAGCGGGGACGGAATGAACACTGAAGCTTTCTTT CASSGDGMNTEAFF TRBV10-2*01 TRBJ1-1*01 18.0 1000.0 CAVLMDSNYQLIW_CASSGDGMNTEAFF 20 6265 EBV-LMP2A EBV 0.9 700 EBV-LMP2A 186 6079 9 EBV LMP2A CLGGLLTMV effector memory T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*02:01 B2M MHCI -12634 chip0516_105711 -0.37 7.49 Chip4 healthy_7 healthy TGTGCTGTGTTAAAGGTTCTGCCCGTCCCCTGCCCTTT CAVLKVc?tARPLPF TRAV2*01 TRAJ22*01 2.0 13.0 TGTGCCAGCAGCCAAGATCGTTCGGGGACTAGCCGGGGAAACATTCAGTACTTC CASSQDRSGTSRGNIQYF TRBV3-1*01 TRBJ2-4*01 94.0 5467.0 CAVLKVc?tARPLPF_CASSQDRSGTSRGNIQYF 1 6282 ZNT8-221-229 ZNT8 0.62 4 NEG 135 6147 3 HomoSapiens ZNT8 ALGDLFQSI Naive T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*02:01 B2M MHCI -12635 chip0516_71502 -0.84 7.03 Chip4 healthy_8 healthy TGTGCAATGAGTCTCCTCGGCTTT CAMSLLGF TRAV14/DV4*01 TRAJ37*01,TRAJ11*01 2.0 6.0 TGTGCCAGCAGCACTAGGGACAGGAACACTGAAGCTTTCTTT CASSTRDRNTEAFF TRBV5-5*01 TRBJ1-1*01 27.0 1471.0 CAMSLLGF_CASSTRDRNTEAFF 1 5479 Nef13-20 HIV 0.5 19 NEG 211 5268 3 HIV-1 Nef WPTVRERM Naive T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-B*08:01 B2M MHCI -12636 chip0516_748886 14.01 7.26 Chip4 healthy_8 healthy TGCATCCTGCCCCTTGCTGGTGGTACTAGCTATGGAAAGCTGACATTT CILPLAGGTSYGKLTF TRAV26-2*01 TRAJ52*01 94.0 6272.0 TGTGCCAGCAGCTCCGGACAGGCCTACGAGCAGTACTTC CASSSGQAYEQYF TRBV7-8*01 TRBJ2-7*01 40.0 2284.0 CILPLAGGTSYGKLTF_CASSSGQAYEQYF 40 4425 EBNA3A-193-201 EBV 0.87 1022 EBNA3A-193-201 201 4224 10 EBV EBNA3A FLRGRAYGL effector memory T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-B*08:01 B2M MHCI -12637 chip0516_442115 12.81 6.72 Chip4 healthy_6 healthy TGCATCGTCAGACTTCTGGCTCTAGCAACACAGGCAAACTAATCTTT CIVRLLAct?SNTGKLIF TRAV26-1*01 TRAJ37*01 28.0 1991.0 CIVRLLAct?SNTGKLIF_ 1 5177 EBV-LMP2-FLY EBV 0.92 355 NEG 169 5008 10 EBV LMP2 FLYALALLL effector memory T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*02:01 B2M MHCI -12638 chip0516_835837 -2.89 9.64 Chip4 healthy_8 healthy _ 6746 6881 M1-ALA FLU 0.67 10 NEG 177 6704 2 InfluenzaA M1 ALASCMGLIY Naive T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*01:01 B2M MHCI -12639 chip0516_347685 -1.93 8.36 Chip4 healthy_9 healthy TGTGCTGTGCGTGCTACGGTCACCCGTTCTATTTT CAVRAac?GHPFYF TRAV8-4*01 TRAJ49*01 33.0 2466.0 CAVRAac?GHPFYF_ 1 5789 GAD2-MMI-8 GAD65 0.48 40 GAD2-MMI-8 165 5624 2 HomoSapiens GAD2 MMIARFKM Naive T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-B*08:01 B2M MHCI -12640 chip0516_327121 8.23 13.57 Chip4 healthy_6 healthy TGTGCTACGGAAGGGGATTCAGGATACAGCACCCTCACCTTT CATEGDSGYSTLTF TRAV17*01 TRAJ11*01 1.0 50.0 CATEGDSGYSTLTF_ 12 3789 EBV-LMP2-FLY EBV 0.92 355 EBV-LMP2-FLY 159 3630 7 EBV LMP2 FLYALALLL transitional T cells between effector and memory populations PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*02:01 B2M MHCI -12641 chip0516_802044 13.48 6.63 Chip4 healthy_8 healthy TGCATCCTGCCCCTTGCTGGTGGTACTAGCTATGGAAAGCTGACATTT CILPLAGGTSYGKLTF TRAV26-2*01 TRAJ52*01 58.0 3193.0 TGTGCCAGCAGCTTAGGACAGGCCTACGAGCAGTACTTC CASSLGQAYEQYF TRBV7-8*01 TRBJ2-7*01 64.0 4467.0 CILPLAGGTSYGKLTF_CASSLGQAYEQYF 308 4781 EBNA3A-193-201 EBV 0.77 1022 EBNA3A-193-201 234 4547 10 EBV EBNA3A FLRGRAYGL effector memory T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-B*08:01 B2M MHCI -12642 chip0516_14164 0.85 5.18 Chip4 healthy_7 healthy TGTGCAGCAAGTATATCAACTGGAGCCAATAGTAAGCTGACATTT CAASISTGANSKLTF TRAV13-1*01 TRAJ56*01 2.0 74.0 TGTGCCAGCATCTGGGGGTCACGGCAGTTCTTC CASIWGSRQFF TRBV5-6*01 TRBJ2-1*01 53.0 5529.0 CAASISTGANSKLTF_CASIWGSRQFF 1 5268 NEF-136-145 FLU 0.64 9 NEG 194 5074 5 InfluenzaA NEF PLTFGWCYKL natural killer-like T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*02:01 B2M MHCI -12643 chip0516_789948 15.6 11.86 Chip4 tet_neg TGCAGTGCTCCGCGGACAGGGCCCTACGAGCAGTACTTC CSAPRTGPYEQYF TRBV20-1*01 TRBJ2-7*01 19.0 1620.0 _CSAPRTGPYEQYF 1 2989 NP140-148 FLU 0.47 102 NEG 178 2811 12 InfluenzaA NP HSNLNDATY effector T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*01:01 B2M MHCI -12644 chip0516_204593 11.14 7.8 Chip4 healthy_8 healthy TCCATCCTCCCCCTTGCTGGTGGTCCTAGCTATGGCAAGCTGACATAT SILPLAGGPSYGKLTY TRAV26-2*01 TRAJ52*01 3.0 62.0 SILPLAGGPSYGKLTY_ 1 6392 EBNA3A-193-201 EBV 0.89 1022 EBNA3A-193-201 181 6211 6 EBV EBNA3A FLRGRAYGL central memory T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-B*08:01 B2M MHCI -12645 chip0516_191403 9.58 9.87 Chip4 healthy_8 healthy TGTGCCAGCAGCTTAGTGGTCCTAGCGGGGAGCACAGATACGCAGTATTTT CASSLVVLAGSTDTQYF TRBV11-2*01 TRBJ2-3*01 14.0 702.0 _CASSLVVLAGSTDTQYF 1 5607 BZLF1-190-197 EBV 0.76 2156 BZLF1-190-197 188 5419 8 EBV BZLF1 RAKFKQLL effector memory T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-B*08:01 B2M MHCI -12646 chip0516_73117 5.57 13.05 Chip4 healthy_8 healthy TGTGCCAGCAGTGATGTCTTAATGGAGGGGTTGCGGCACACTGAAGCTTTCTTT CASSDVLMEGLRHTEAFF TRBV6-4*01 TRBJ1-1*01 16.0 740.0 _CASSDVLMEGLRHTEAFF 1 8399 NP30-38 FLU 0.87 72 NP30-38 170 8229 7 InfluenzaA NP RPIIRPATL transitional T cells between effector and memory populations PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-B*08:01 B2M MHCI -12647 chip0516_336155 6.91 10.97 Chip4 healthy_8 healthy TGCATCCTGCCCCTTGCTGGTGGTACTAGCTATGGAAAGCTGACATTT CILPLAGGTSYGKLTF TRAV26-2*01 TRAJ52*01 33.0 1684.0 TGTGCCAGCAGCTTAGGACAGGCCTACGAGCAGTACTTC CASSLGQAYEQYF TRBV7-8*01 TRBJ2-7*01 10.0 588.0 CILPLAGGTSYGKLTF_CASSLGQAYEQYF 308 5443 EBNA3A-193-201 EBV 0.92 1022 EBNA3A-193-201 168 5275 7 EBV EBNA3A FLRGRAYGL transitional T cells between effector and memory populations PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-B*08:01 B2M MHCI -12648 chip0516_576895 -0.72 9.58 Chip4 healthy_8 healthy TGTGCAGCAACATTAACAATGGAGAAAGCCAAGGAAATCTCATCTTT CAATLTMga?ESQGNLIF TRAV13-1*01 TRAJ42*01 1.0 27.0 CAATLTMga?ESQGNLIF_ 1 8550 ZNT8-SVR-10 ZNT8 0.45 1 ZNT8-SVR-10 168 8382 3 HomoSapiens ZNT8 SVRAAFVHAL Naive T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-B*08:01 B2M MHCI -12649 chip0516_749206 -3.28 12.22 Chip4 healthy_8 healthy _ 6746 6661 G6PC2-LTS-10 IGRP 0.82 59 G6PC2-LTS-10 149 6512 1 HomoSapiens G6PC2 LTSLTILQLY Naive T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*01:01 B2M MHCI -12650 chip0516_262308 6.32 11.93 Chip4 healthy_8 healthy TGTGCCAGCAGTTTAATGGGGACAGGGGGCTTGAGTGAAAAACTGTTTTTT CASSLMGTGGLSEKLFF TRBV28*01 TRBJ1-4*01 8.0 347.0 _CASSLMGTGGLSEKLFF 18 6248 EBNA3A-158-166 EBV 0.41 444 EBNA3A-158-166 184 6064 7 EBV EBNA3A QAKWRLQTL transitional T cells between effector and memory populations PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-B*08:01 B2M MHCI -12651 chip0516_38708 13.83 7.25 Chip4 healthy_8 healthy TGCATCCTGCCCCTTGCTGGTGGTACTAGCTCTGGAAAGCTGACATTT CILPLAGGTSSGKLTF TRAV26-2*01 TRAJ52*01 5.0 263.0 CILPLAGGTSSGKLTF_ 1 5119 EBNA3A-193-201 EBV 0.83 1022 EBNA3A-193-201 206 4913 10 EBV EBNA3A FLRGRAYGL effector memory T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-B*08:01 B2M MHCI -12652 chip0516_383357 -2.03 9.33 Chip4 healthy_7 healthy _ 6746 6044 ZNT8-173-181 ZNT8 1.0 27 NEG 195 5849 3 HomoSapiens ZNT8 IQATVMIIV Naive T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*02:01 B2M MHCI -12653 chip0516_178467 -0.24 7.09 Chip4 healthy_7 healthy TGTGCCGTGAATTCGGGAAATGACATGCGCTTT CAVNSGNDMRF TRAV8-1*01 TRAJ43*01 19.0 2038.0 TGTGCCTGGGTCGAATTAGGTTTTTCCTACAATGAGCAGTTCTTC CAWVELGFSYNEQFF TRBV30*01 TRBJ2-1*01 45.0 2731.0 CAVNSGNDMRF_CAWVELGFSYNEQFF 1 8141 MART1-26-35 MART1 0.45 3 NEG 202 7939 3 HomoSapiens MART1 EAAGIGILTV Naive T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*02:01 B2M MHCI -12654 chip0516_827770 -0.74 8.07 Chip4 healthy_8 healthy TGTGCAATGAGAGAGCGAACTTACAACTTCAACAAATTTTACTTT CAMRERTYNFNKFYF TRAV14/DV4*01 TRAJ21*01 26.0 1990.0 TGTGCCAGCAATCGGGGGTCCACAGATACGCAGTATTTT CASNRGSTDTQYF TRBV9*01 TRBJ2-3*01 2.0 18.0 CAMRERTYNFNKFYF_CASNRGSTDTQYF 1 5097 GAD2-YAF-9 GAD65 0.87 6 GAD2-YAF-9 179 4918 4 HomoSapiens GAD2 YAFLHATDL Naive T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-B*08:01 B2M MHCI -12655 chip0516_678176 8.12 10.26 Chip4 healthy_8 healthy TGTGCCAGCATAGTAGCCAGGGACAAGCAGTACTTC CASIVARDKQYF TRBV27*01 TRBJ2-7*01 4.0 275.0 _CASIVARDKQYF 1 6746 NP44-52 FLU 0.5 474 NEG 173 6573 8 InfluenzaA NP CTELKLSDY effector memory T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*01:01 B2M MHCI -12656 chip0516_441522 -0.34 7.49 Chip4 healthy_9 healthy TGTGCCAGCAGCTTAGAGGGTGAGACCCAGTACTTC CASSLEGETQYF TRBV7-9*01 TRBJ2-5*01 22.0 2058.0 _CASSLEGETQYF 1 5371 NP44-52 FLU 0.65 474 NP44-52 169 5202 3 InfluenzaA NP CTELKLSDY Naive T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*01:01 B2M MHCI -12657 chip0516_67520 0.0 8.7 Chip4 healthy_9 healthy _ 6746 7024 NP380-388 FLU 0.48 60 NEG 160 6864 4 InfluenzaA NP ELRSRYWAI Naive T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-B*08:01 B2M MHCI -12658 chip0516_47084 -2.15 7.32 Chip4 healthy_8 healthy TGTGCTGTGAGTTCACGGGCAGGCGTGCACTTACTTTT CAVSSRg?cRRALTF TRAV8-6*01 TRAJ5*01 5.0 487.0 TGTGCCAGTAGTATCCGGGGACCGAACACTGAAGCTTTCTTT CASSIRGPNTEAFF TRBV19*01 TRBJ1-1*01 24.0 1350.0 CAVSSRg?cRRALTF_CASSIRGPNTEAFF 1 7750 NP30-38 FLU 0.72 72 NEG 162 7588 3 InfluenzaA NP RPIIRPATL Naive T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-B*08:01 B2M MHCI -12659 chip0516_705861 5.45 9.26 Chip4 healthy_8 healthy TGTGCTGTGACCCTTACCCTCTACTCTGGGGCTGGGAGTTACCAACTCACTTTC CAVTLTLYSGAGSYQLTF TRAV21*01 TRAJ28*01 26.0 1715.0 TGTGCCAGCAGTTTAATGGGGACAGGGGGCTTGAGTGAAAAACTGTTTTTT CASSLMGTGGLSEKLFF TRBV28*01 TRBJ1-4*01 28.0 1470.0 CAVTLTLYSGAGSYQLTF_CASSLMGTGGLSEKLFF 19 7159 EBNA3A-158-166 EBV 0.41 444 EBNA3A-158-166 166 6993 6 EBV EBNA3A QAKWRLQTL central memory T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-B*08:01 B2M MHCI -12660 chip0516_253710 6.0 12.18 Chip4 healthy_8 healthy TGTGCAATGAGTGAGGGGGGTAGCAACTATAAACTGACATTT CAMSEGGSNYKLTF TRAV14/DV4*01 TRAJ53*01 18.0 763.0 CAMSEGGSNYKLTF_ 1 7224 NP30-38 FLU 0.81 72 NP30-38 172 7052 7 InfluenzaA NP RPIIRPATL transitional T cells between effector and memory populations PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-B*08:01 B2M MHCI -12661 chip0516_583809 10.72 6.72 Chip4 healthy_8 healthy TGCATCCTGCCCCTTGCTGGTGGTACTAGCTATGGAAAGCTGACATTT CILPLAGGTSYGKLTF TRAV26-2*01 TRAJ52*01 9.0 488.0 TGTGCCAGCAGCTTAGGACAGGCCTACGAGCAGTACTTC CASSLGQAYEQYF TRBV7-8*01 TRBJ2-7*01 22.0 1457.0 CILPLAGGTSYGKLTF_CASSLGQAYEQYF 308 8248 EBNA3A-193-201 EBV 0.63 1022 EBNA3A-193-201 222 8026 10 EBV EBNA3A FLRGRAYGL effector memory T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-B*08:01 B2M MHCI -12662 chip0516_717824 13.55 9.76 Chip4 healthy_8 healthy TGTGTTGTGATACCCCGGGCCGGAGACATGCGCTTT CVVIPRAGDMRF TRAV8-2*01 TRAJ43*01 35.0 3097.0 CVVIPRAGDMRF_ 1 5301 ZNT8-YAY-8 ZNT8 0.72 54 ZNT8-YAY-8 169 5132 8 HomoSapiens ZNT8 YAYAKWKL effector memory T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-B*08:01 B2M MHCI -12663 chip0516_213954 11.28 8.49 Chip4 healthy_10 healthy TGTGCCAGCAGCTCCGAGGAGACAGGGAGCAATCAGCCCCAGCATTTT CASSSEETGSNQPQHF TRBV7-9*01 TRBJ1-5*01 2.0 9.0 _CASSSEETGSNQPQHF 2 5143 EBNA3A-158-166 EBV 0.88 444 EBNA3A-158-166 190 4953 10 EBV EBNA3A QAKWRLQTL effector memory T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-B*08:01 B2M MHCI -12664 chip0516_448527 5.9 12.82 Chip4 healthy_6 healthy _ 6746 6560 ROTA-VP6 ROTA 0.88 47 ROTA-VP6 187 6373 7 RotavirusA VP6 TLLANVTAV transitional T cells between effector and memory populations PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*02:01 B2M MHCI -12665 chip0516_828683 11.47 7.57 Chip4 healthy_8 healthy TGCATCCTGCCCCTTGCTGGTGGTACTAGCTATGGAAAGCTGACATTT CILPLAGGTSYGKLTF TRAV26-2*01 TRAJ52*01 43.0 1927.0 CILPLAGGTSYGKLTF_ 55 5894 EBNA3A-193-201 EBV 0.78 1022 EBNA3A-193-201 177 5717 10 EBV EBNA3A FLRGRAYGL effector memory T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-B*08:01 B2M MHCI -12666 chip0516_125383 -3.08 8.24 Chip4 healthy_6 healthy TGTGCTGGGCCGTATTCAGGAGGAGGTGCTGACGGACTCACCTTT CAGPYSGGGADGLTF TRAV35*01 TRAJ45*01 78.0 3276.0 CAGPYSGGGADGLTF_ 1 6672 PREINS-2-10 INS 1.0 37 NEG 157 6515 2 HomoSapiens PREINS ALWMRLLPL Naive T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*02:01 B2M MHCI -12667 chip0516_680993 13.35 10.03 Chip4 healthy_9 healthy _ 6746 3838 BZLF1-190-197 EBV 0.84 2156 BZLF1-190-197 161 3677 12 EBV BZLF1 RAKFKQLL effector T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-B*08:01 B2M MHCI -12668 chip0516_430911 14.23 9.73 Chip4 healthy_9 healthy TGCAGTGCTAGAGATCGGCCGGGACACCCTGACAATGAGCAGTTCTTC CSARDRPGHPDNEQFF TRBV20-1*01 TRBJ2-1*01 2.0 15.0 _CSARDRPGHPDNEQFF 1 3429 EBNA3A-158-166 EBV 0.91 444 EBNA3A-158-166 164 3265 12 EBV EBNA3A QAKWRLQTL effector T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-B*08:01 B2M MHCI -12669 chip0516_329096 -0.45 10.05 Chip4 healthy_8 healthy TGCGCCAGCAGCCCGGAGCGACAGACAAACTATGGCTACACCTTC CASSPERQTNYGYTF TRBV5-1*01 TRBJ1-2*01 18.0 1634.0 _CASSPERQTNYGYTF 1 5995 ZNT8-AAK-9 ZNT8 0.72 4 ZNT8-AAK-9 148 5847 3 HomoSapiens ZNT8 AAKMYAFTL Naive T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-B*08:01 B2M MHCI -12670 chip0516_686831 14.56 7.96 Chip4 healthy_8 healthy TGTGCCAGCAGCTTAGGACAGGCCTACGAGCAGTACTTC CASSLGQAYEQYF TRBV7-8*01 TRBJ2-7*01 18.0 1119.0 _CASSLGQAYEQYF 175 4221 EBNA3A-193-201 EBV 0.69 1022 EBNA3A-193-201 199 4022 10 EBV EBNA3A FLRGRAYGL effector memory T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-B*08:01 B2M MHCI -12671 chip0516_178488 -2.66 8.35 Chip4 healthy_6 healthy TGTGCAATGAAGATATCTAACTTTGGAAATGAGAAATTAACCTTT CAMKISNFGNEKLTF TRAV12-3*01 TRAJ48*01 55.0 2741.0 TGTGCCAGCAGCCTACCTTCTTGGGAAGACGGATACCAAGAGACCCAGTACTTC CASSLPSWEDGYQETQYF TRBV14*01 TRBJ2-5*01 19.0 718.0 CAMKISNFGNEKLTF_CASSLPSWEDGYQETQYF 1 8625 PGT-178 PGT 0.63 1480 PGT-178 170 8455 2 HomoSapiens PGT LLAGIGTVPI Naive T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*02:01 B2M MHCI -12672 chip0516_213467 0.3 8.95 Chip4 healthy_9 healthy TGTGTGGTGATGTCAAATGGAGGAAGCCAAGGAAATCTCATCTTT CVVMSNGGSQGNLIF TRAV12-1*01 TRAJ42*01 64.0 2635.0 TGTGCCATCAGTGGCACCCCGGGGGATACGCAGTATTTT CAISGTPGDTQYF TRBV10-3*01 TRBJ2-3*01 3.0 160.0 CVVMSNGGSQGNLIF_CAISGTPGDTQYF 1 5324 NP44-52 FLU 0.65 474 NEG 162 5162 4 InfluenzaA NP CTELKLSDY Naive T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*01:01 B2M MHCI -12673 chip0516_513539 11.29 6.85 Chip4 healthy_6 healthy _ 6746 6780 EBV-LMP2A EBV 0.93 700 EBV-LMP2A 159 6621 10 EBV LMP2A CLGGLLTMV effector memory T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*02:01 B2M MHCI -12674 chip0516_485863 5.69 12.22 Chip4 healthy_8 healthy _ 6746 4617 NP30-38 FLU 0.58 72 NP30-38 144 4473 7 InfluenzaA NP RPIIRPATL transitional T cells between effector and memory populations PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-B*08:01 B2M MHCI -12675 chip0516_61336 12.93 6.25 Chip4 healthy_6 healthy TGTGCTGTGGCCCTCTCAAGCAAATCAACCTTT CAVALSSKSTF TRAV8-3*01 TRAJ27*01 2.0 46.0 TGCGCCAGCAGCGGGGACGGAATGAACACTGAAGCTTTCTTT CASSGDGMNTEAFF TRBV10-2*01 TRBJ1-1*01 1.0 70.0 CAVALSSKSTF_CASSGDGMNTEAFF 50 7183 EBV-LMP2A EBV 0.93 700 EBV-LMP2A 240 6943 10 EBV LMP2A CLGGLLTMV effector memory T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*02:01 B2M MHCI -12676 chip0516_535772 15.86 11.43 Chip4 healthy_9 healthy TGTGCAGCAAGCCCTCCCAAGCTCATCTTT CAASPPKLIF TRAV29/DV5*01 TRAJ34*01 1.0 48.0 TGTGCCAGCAGCTCCTTGGTCGACAATGAGCAGTTCTTC CASSSLVDNEQFF TRBV7-3*01 TRBJ2-1*01 20.0 1041.0 CAASPPKLIF_CASSSLVDNEQFF 2 2201 BZLF1-190-197 EBV 0.62 2156 BZLF1-190-197 188 2013 12 EBV BZLF1 RAKFKQLL effector T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-B*08:01 B2M MHCI -12677 chip0516_409297 -2.66 8.29 Chip4 healthy_8 healthy TGTGTGTTTGATAACTATGGTCAGAATTTTGTCTTT CVFDNYGQNFVF TRAV12-1*01 TRAJ26*01 18.0 1293.0 TGTGCCAGCAGCGTAGGGTCTGGATACGAGCAGTACTTC CASSVGSGYEQYF TRBV9*01 TRBJ2-7*01 20.0 1153.0 CVFDNYGQNFVF_CASSVGSGYEQYF 1 6889 G6PC2-LTS-10 IGRP 0.94 59 G6PC2-LTS-10 165 6724 2 HomoSapiens G6PC2 LTSLTILQLY Naive T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*01:01 B2M MHCI -12678 chip0516_280151 5.37 9.62 Chip4 healthy_8 healthy TGCATCCTGCCCCTTGCTGGTGGTACTAGCTATGGAAAGCTGACATCT CILPLAGGTSYGKLTS TRAV26-2*01 TRAJ52*01 33.0 1958.0 CILPLAGGTSYGKLTS_ 1 5970 EBNA3A-193-201 EBV 0.75 1022 EBNA3A-193-201 155 5815 6 EBV EBNA3A FLRGRAYGL central memory T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-B*08:01 B2M MHCI -12679 chip0516_438860 -3.43 10.73 Chip4 healthy_8 healthy TGTGCTCTGAGTTCCGGCACTGCCAGTAAACTCACCTTT CALSSGTASKLTF TRAV19*01 TRAJ44*01 9.0 630.0 CALSSGTASKLTF_ 1 4357 NP380-388 FLU 1.0 60 NP380-388 148 4209 2 InfluenzaA NP ELRSRYWAI Naive T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-B*08:01 B2M MHCI -12680 chip0516_236978 5.22 11.85 Chip4 healthy_6 healthy TGTGCCTTTATTGATAGCAACTATCAGTTAATCTGG CAFIDSNYQLIW TRAV24*01 TRAJ33*01 22.0 2036.0 CAFIDSNYQLIW_ 1 6103 PTPRN-180-188 PTPRN 0.87 18 NEG 173 5930 6 HomoSapiens PTPRN LLPPLLEHL central memory T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*02:01 B2M MHCI -12681 chip0516_788319 9.66 9.97 Chip4 healthy_8 healthy TGTGCCAACAGCTTAGGACAGGCCTACGAGCAGTACTTC CANSLGQAYEQYF TRBV7-8*01 TRBJ2-7*01 4.0 179.0 _CANSLGQAYEQYF 2 6626 EBNA3A-193-201 EBV 0.92 1022 EBNA3A-193-201 171 6455 9 EBV EBNA3A FLRGRAYGL effector memory T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-B*08:01 B2M MHCI -12682 chip0516_716799 15.6 10.18 Chip4 healthy_6 healthy TGTGCCAACAGCTTAAGGGAGACGACAGGCCTAAAACATTCAGTACTTC CANSLRET??aQA*NIQYF TRBV7-2*01 TRBJ2-4*01 18.0 695.0 _CANSLRET??aQA*NIQYF 1 3674 EBV-BLMF1 EBV 0.83 2531 NEG 155 3519 12 EBV BLMF1 GLCTLVAML effector T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*02:01 B2M MHCI -12683 chip0516_227713 10.18 6.71 Chip4 healthy_6 healthy TGCGCCAGCAGCGGGGACAGAATGAACACTGAAGCTTTCTTT CASSGDRMNTEAFF TRBV10-2*01 TRBJ1-1*01 25.0 1312.0 _CASSGDRMNTEAFF 1 10651 EBV-LMP2A EBV 0.95 700 EBV-LMP2A 202 10449 10 EBV LMP2A CLGGLLTMV effector memory T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*02:01 B2M MHCI -12684 chip0516_149409 9.91 9.47 Chip4 healthy_9 healthy _ 6746 5732 BZLF1-190-197 EBV 0.89 2156 BZLF1-190-197 145 5587 8 EBV BZLF1 RAKFKQLL effector memory T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-B*08:01 B2M MHCI -12685 chip0516_452918 6.5 12.64 Chip4 healthy_7 healthy TGTGCAGGCAATTATGGAGGAAGCCAAGGAAATCTCATCTTT CAGNYGGSQGNLIF TRAV25*01 TRAJ42*01 12.0 507.0 TGTGCCAGTAGTGCGAGAAGCACCGGGGAGCTGTTTTTT CASSARSTGELFF TRBV19*01 TRBJ2-2*01 32.0 2425.0 CAGNYGGSQGNLIF_CASSARSTGELFF 1 4352 M1 FLU 1.0 1250 M1 174 4178 7 InfluenzaA M1 GILGFVFTL transitional T cells between effector and memory populations PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*02:01 B2M MHCI -12686 chip0516_12662 6.41 11.94 Chip4 healthy_8 healthy TGTGCCTTCGAGGCGGACACCGGTAACCAGTTCTATTTT CAFEADTGNQFYF TRAV24*01 TRAJ49*01 6.0 323.0 TGTGCCAGCTATTCGACTAGCGGGGGCCAAGAGACCCAGTACTTC CASYSTSGGQETQYF TRBV2*01 TRBJ2-5*01 123.0 9108.0 CAFEADTGNQFYF_CASYSTSGGQETQYF 2 7010 NP44-52 FLU 0.63 474 NEG 153 6857 7 InfluenzaA NP CTELKLSDY transitional T cells between effector and memory populations PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*01:01 B2M MHCI -12687 chip0516_391347 -1.43 7.73 Chip4 healthy_6 healthy TGTGCTGTGAGAGGTAACAATGACATGCGCTTT CAVRGNNDMRF TRAV21*01 TRAJ43*01 28.0 3640.0 TGTGCCAGCAGCGCCGGGACTTTACAAGAGACCCAGTACTTC CASSAGTLQETQYF TRBV6-2*01,TRBV6-3*01 TRBJ2-5*01 22.0 1205.0 CAVRGNNDMRF_CASSAGTLQETQYF 1 7372 EBV-LMP2A EBV 0.88 700 EBV-LMP2A 162 7210 3 EBV LMP2A CLGGLLTMV Naive T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*02:01 B2M MHCI -12688 chip0516_230642 13.22 6.37 Chip4 healthy_6 healthy TGTGCCAGCAGTCCGTTGGGGGGGGCAGATGGCTACACCTTC CASSPLGGADGYTF TRBV6-1*01 TRBJ1-2*01 5.0 318.0 _CASSPLGGADGYTF 5 3665 EBV-LMP2-FLY EBV 0.56 355 NEG 194 3471 10 EBV LMP2 FLYALALLL effector memory T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*02:01 B2M MHCI -12689 chip0516_374178 9.24 8.72 Chip4 healthy_6 healthy TGTGCTGTTCTAATGGATAGCAACTATCAGTTAATCTGG CAVLMDSNYQLIW TRAV12-3*01 TRAJ33*01 15.0 565.0 TGCGCCAGCAGCGGGGACGGAATGAACACTGAAGCTTTCCTT CASSGDGMNTEAFL TRBV10-2*01 TRBJ1-1*01 5.0 110.0 CAVLMDSNYQLIW_CASSGDGMNTEAFL 1 8430 EBV-LMP2A EBV 0.9 700 EBV-LMP2A 185 8245 8 EBV LMP2A CLGGLLTMV effector memory T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*02:01 B2M MHCI -12690 chip0516_844133 -2.4 7.61 Chip4 healthy_6 healthy TGTGCTGTGAGTGATCTGCCGGATTCAGGAAACACACCTCTTGTCTTT CAVSDLPDSGNTPLVF TRAV8-4*01 TRAJ29*01 49.0 2064.0 CAVSDLPDSGNTPLVF_ 1 7897 ZNT8-173-181 ZNT8 0.79 27 NEG 155 7742 2 HomoSapiens ZNT8 IQATVMIIV Naive T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*02:01 B2M MHCI -12691 chip0516_190085 8.54 9.98 Chip4 healthy_8 healthy _ 6746 6032 BZLF1-190-197 EBV 0.9 2156 BZLF1-190-197 174 5858 8 EBV BZLF1 RAKFKQLL effector memory T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-B*08:01 B2M MHCI -12692 chip0516_479028 9.91 10.11 Chip4 healthy_6 healthy TGCGCCAGCAGCGGGGACGGAATGAACACTGAAGCTTTCTTT CASSGDGMNTEAFF TRBV10-2*01 TRBJ1-1*01 16.0 934.0 _CASSGDGMNTEAFF 131 5635 EBV-LMP2A EBV 0.89 700 EBV-LMP2A 169 5466 9 EBV LMP2A CLGGLLTMV effector memory T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*02:01 B2M MHCI -12693 chip0516_342762 -1.15 7.5 Chip4 tet_neg TGTGCTGTGCAGGGCAACACCGACAAGCTCATCTTT CAVQGNTDKLIF TRAV20*01 TRAJ34*01 7.0 487.0 TGTGCCAGCAGCTATGGGACCGGCACAGATACGCAGTATTTT CASSYGTGTDTQYF TRBV2*01 TRBJ2-3*01 48.0 3238.0 CAVQGNTDKLIF_CASSYGTGTDTQYF 1 7563 NP140-148 FLU 0.5 102 NEG 146 7417 4 InfluenzaA NP HSNLNDATY Naive T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*01:01 B2M MHCI -12694 chip0516_175641 -2.92 8.6 Chip4 healthy_9 healthy TGTGCTGTGAGTCCCATTTCTTCTGGTTCTGCAAGGCAACTGACCTTT CAVSPISSGSARQLTF TRAV21*01 TRAJ22*01 59.0 3204.0 CAVSPISSGSARQLTF_ 1 6501 PTPRN-LPA-8 PTPRN 0.57 2 NEG 138 6363 2 HomoSapiens PTPRN LPARTSPM Naive T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-B*08:01 B2M MHCI -12695 chip0516_104577 -1.38 7.74 Chip4 healthy_8 healthy TGCATCGTCAGGGCCCTGGAATATGGAAACAAACTGGTCTTT CIVRALEYGNKLVF TRAV26-1*01 TRAJ47*01 7.0 420.0 CGTGCTGTGCGGCGCCGACTACAAACTCAGCTTT RAVRRcg??acYKLSF TRAV20*01 TRAJ20*01 7.0 440.0 0.41 TGTGCCAGCAGCATGGACAGTTACAATGAGCAGTTCTTC CASSMDSYNEQFF TRBV27*01 TRBJ2-1*01 18.0 1108.0 CIVRALEYGNKLVF_CASSMDSYNEQFF 1 8376 NP140-148 FLU 0.89 102 NP140-148 138 8238 3 InfluenzaA NP HSNLNDATY Naive T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*01:01 B2M MHCI -12696 chip0516_711829 11.68 7.47 Chip4 healthy_8 healthy TGTGCCGTGAAGACGGACACCAATGCAGGCAAATCAACCTTT CAVKTDTNAGKSTF TRAV12-2*01 TRAJ27*01 20.0 1543.0 CAVKTDTNAGKSTF_ 20 4703 EBNA3A-193-201 EBV 0.81 1022 EBNA3A-193-201 190 4513 10 EBV EBNA3A FLRGRAYGL effector memory T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-B*08:01 B2M MHCI -12697 chip0516_513095 8.97 8.1 Chip4 healthy_6 healthy TGTGCCGTGAAGGACACCGACAAGCTCATCTTT CAVKDTDKLIF TRAV8-1*01 TRAJ34*01 1.0 135.0 TGTGCCAGCGGGAGCATAGTGAACACTGAAGCTTTCTTT CASGSIVNTEAFF TRBV3-1*01 TRBJ1-1*01 26.0 2059.0 CAVKDTDKLIF_CASGSIVNTEAFF 1 4489 EBV-BRLF1 EBV 0.94 1264 EBV-BRLF1 171 4318 8 EBV BRLF1 YVLDHLIVV effector memory T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*02:01 B2M MHCI -12698 chip0516_240335 -0.25 7.28 Chip4 tet_neg TGTGCTGTGGTGTGAAAATGCAGGCAACATGCTCACCTTT CAVV*Ktg??caGNMLTF TRAV2*01 TRAJ39*01 39.0 1832.0 TGCAGCGTTGAAGATCCTGTACAGATCTCTGGAAACACCATATATTTT CSVEDPVQISGNTIYF TRBV29-1*01 TRBJ1-3*01 127.0 6883.0 CAVV*Ktg??caGNMLTF_CSVEDPVQISGNTIYF 1 11827 ZNT8-VTD-9 ZNT8 0.75 65 ZNT8-VTD-9 172 11655 3 HomoSapiens ZNT8 VTDAAHLLI Naive T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*01:01 B2M MHCI -12699 chip0516_227231 -2.92 8.29 Chip4 healthy_10 healthy TGTGTGGTGATAGATTATAACCAGGGAGGAAAGCTTATCTTC CVVIDYNQGGKLIF TRAV12-1*01 TRAJ23*01 38.0 1508.0 TGTGCCAGCAGGACCTCGTGGACCTCCTACGAGCAGTACTTC CASRTSWTSYEQYF TRBV6-1*01 TRBJ2-7*01 30.0 1808.0 CVVIDYNQGGKLIF_CASRTSWTSYEQYF 1 5616 IAPP-STN-9 IAPP 0.44 48 NEG 139 5477 2 HomoSapiens IAPP STNVGSNTY Naive T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*01:01 B2M MHCI -12700 chip0516_791652 7.32 14.04 Chip4 healthy_6 healthy TGTGCAATGACCGAGGGATTATGGAGGCCCCCGCGGAACTCTCATCTTT CAMTEGLW??aGPRGTLIF TRAV12-3*01 TRAJ42*01 27.0 1515.0 CAMTEGLW??aGPRGTLIF_ 1 3526 M1 FLU 0.94 1250 M1 168 3358 7 InfluenzaA M1 GILGFVFTL transitional T cells between effector and memory populations PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*02:01 B2M MHCI -12701 chip0516_39481 6.65 10.82 Chip4 healthy_8 healthy TGTGCTGTGACCCTTACCCTCTACTCTGGGGCTGGGAGTTACCAACTCACTTTC CAVTLTLYSGAGSYQLTF TRAV21*01 TRAJ28*01 26.0 1334.0 TGTGCCAGCAGTTTAATGGAGACAGGGGGCTTGAGTGAAAAACTGTTTTTT CASSLMETGGLSEKLFF TRBV28*01 TRBJ1-4*01 39.0 1839.0 CAVTLTLYSGAGSYQLTF_CASSLMETGGLSEKLFF 1 8687 EBNA3A-158-166 EBV 0.44 444 EBNA3A-158-166 162 8525 7 EBV EBNA3A QAKWRLQTL transitional T cells between effector and memory populations PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-B*08:01 B2M MHCI -12702 chip0516_425193 5.77 12.24 Chip4 healthy_8 healthy TGCATCCTGAGAGACGTGTGAGGTAGGCGGCGGTGCTGACGGACTCACCTTT CILRDV*Gag??gcGGADGLTF TRAV26-2*01 TRAJ45*01 43.0 1965.0 TGCGCCAGCAGTGTGTGGAGCTCCTACGCGCAGTCCCTC CASSVWSSYAQSL TRBV10-2*01 TRBJ2-7*01 2.0 117.0 CILRDV*Gag??gcGGADGLTF_CASSVWSSYAQSL 1 6818 NP413-421 FLU 0.77 16 NP413-421 159 6659 7 InfluenzaA NP ALKCKGFHV transitional T cells between effector and memory populations PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-B*08:01 B2M MHCI -12703 chip0516_109991 5.03 10.64 Chip4 healthy_8 healthy TGTGCTGTGACCCTTACCCTCTACTCTGGGGCTGGGAGTTACCAACTCACTTTC CAVTLTLYSGAGSYQLTF TRAV21*01 TRAJ28*01 16.0 870.0 TGTGCCAGCAGTTTAATGGGGACAGGGGGCTTGAGTGAAAAACTGTTTTTT CASSLMGTGGLSEKLFF TRBV28*01 TRBJ1-4*01 44.0 1802.0 CAVTLTLYSGAGSYQLTF_CASSLMGTGGLSEKLFF 19 4709 EBNA3A-158-166 EBV 0.51 444 EBNA3A-158-166 155 4554 6 EBV EBNA3A QAKWRLQTL central memory T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-B*08:01 B2M MHCI -12704 chip0516_875163 -2.43 7.82 Chip4 healthy_8 healthy TGTGCCAGCAGTTACCGGGGCGCGAATCAGCCCCAGCATTTT CASSYRGANQPQHF TRBV12-3*01,TRBV12-4*01 TRBJ1-5*01 1.0 39.0 _CASSYRGANQPQHF 1 6967 GFAP-LRL-8 GFAP 0.49 18 GFAP-LRL-8 160 6807 2 HomoSapiens GFAP LRLRLDQL Naive T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-B*08:01 B2M MHCI -12705 chip0516_787757 12.16 6.79 Chip4 healthy_8 healthy TGCATCCTGCCCCATGCTGGTGGTACTAGCTATGGAAAGCTGACATTT CILPHAGGTSYGKLTF TRAV26-2*01 TRAJ52*01 13.0 699.0 TGTGCCAGCAGCTTAGGACAGGCCTACGAGCAGTACTTC CASSLGQAYEQYF TRBV7-8*01 TRBJ2-7*01 1.0 47.0 CILPHAGGTSYGKLTF_CASSLGQAYEQYF 1 5872 EBNA3A-193-201 EBV 0.91 1022 EBNA3A-193-201 190 5682 10 EBV EBNA3A FLRGRAYGL effector memory T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-B*08:01 B2M MHCI -12706 chip0516_203353 9.03 11.67 Chip4 healthy_8 healthy TGCATCCTGCCCCTCGCTGGTGGTACTAGCTATGGAAAGCTGACATTT CILPLAGGTSYGKLTF TRAV26-2*01 TRAJ52*01 28.0 1770.0 TGTGCCAGCAGCTCCGGACAGGCCTACGAGCAGTACTTC CASSSGQAYEQYF TRBV7-8*01 TRBJ2-7*01 5.0 270.0 CILPLAGGTSYGKLTF_CASSSGQAYEQYF 40 4247 EBNA3A-193-201 EBV 0.97 1022 EBNA3A-193-201 157 4090 9 EBV EBNA3A FLRGRAYGL effector memory T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-B*08:01 B2M MHCI -12707 chip0516_78526 15.0 12.18 Chip4 healthy_8 healthy TGTGCCGTGAAGACGGACACCAATGCAGGCAAATCAACCTTT CAVKTDTNAGKSTF TRAV12-2*01 TRAJ27*01 45.0 2852.0 CAVKTDTNAGKSTF_ 20 3505 EBNA3A-193-201 EBV 0.67 1022 NEG 183 3322 12 EBV EBNA3A FLRGRAYGL effector T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-B*08:01 B2M MHCI -12708 chip0516_350960 9.86 8.85 Chip4 healthy_8 healthy TGCATCCTGCCCCTTGCTGGTGGTACTAGCTATGGAAAGCTGACATTT CILPLAGGTSYGKLTF TRAV26-2*01 TRAJ52*01 35.0 2080.0 TGTGCCAGCAGCTCCGGACAGGCCTACGAGCAGTACTTC CASSSGQAYEQYF TRBV7-8*01 TRBJ2-7*01 8.0 654.0 CILPLAGGTSYGKLTF_CASSSGQAYEQYF 40 6519 EBNA3A-193-201 EBV 0.89 1022 EBNA3A-193-201 173 6346 8 EBV EBNA3A FLRGRAYGL effector memory T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-B*08:01 B2M MHCI -12709 chip0516_172959 11.65 12.45 Chip4 healthy_8 healthy TGCATCCTGCCCCTTGCTGGTGGTACTAGCTATGGAAAGCTGACATTT CILPLAGGTSYGKLTF TRAV26-2*01 TRAJ52*01 44.0 2660.0 TGTGCCAGCAGCTCCGGACAGGCCTACGAGCAGTACTTC CASSSGQAYEQYF TRBV7-8*01 TRBJ2-7*01 15.0 1145.0 CILPLAGGTSYGKLTF_CASSSGQAYEQYF 40 4182 EBNA3A-193-201 EBV 0.94 1022 EBNA3A-193-201 165 4017 11 EBV EBNA3A FLRGRAYGL effector T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-B*08:01 B2M MHCI -12710 chip0516_87778 8.74 10.27 Chip4 healthy_10 healthy TGTGCCAGCTCACCGGAAGGCCCCAACTCCTACGAGCAGTACTTC CASSPEGPNSYEQYF TRBV18*01 TRBJ2-7*01 13.0 1007.0 _CASSPEGPNSYEQYF 1 6209 IAPP-STN-9 IAPP 0.8 48 NEG 169 6040 8 HomoSapiens IAPP STNVGSNTY effector memory T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*01:01 B2M MHCI -12711 chip0516_305229 -4.02 10.97 Chip4 healthy_9 healthy TGTGCAGCAAGCGCTCAGCCCCCATGAATAATAATGCAGGCAACATGCTCACCTTT CAASAQPP*a?tNNAGNMLTF TRAV29/DV5*01 TRAJ39*01 1.0 157.0 CAASAQPP*a?tNNAGNMLTF_ 1 4152 GAD2-TLK-8 GAD65 0.44 11 NEG 147 4005 2 HomoSapiens GAD2 TLKKMREI Naive T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-B*08:01 B2M MHCI -12712 chip0516_452553 -2.77 8.11 Chip4 healthy_6 healthy TGTGCTGTGGAGGATCAGGGGATTTATAACCAGGGAGGAAAGCTTATCTTC CAVEDQGIYNQGGKLIF TRAV2*01 TRAJ23*01 84.0 2384.0 TGTGCCAGTAGTATGTATTTTGGGTTTTCCCCCCCTGGCGGGGAGCTGTTTTTT CASSMYFGFSPPGGELFF TRBV19*01 TRBJ2-2*01 11.0 547.0 CAVEDQGIYNQGGKLIF_CASSMYFGFSPPGGELFF 1 6931 IGRP-211-219 IGRP 0.79 13 NEG 156 6775 2 HomoSapiens IGRP NLFLFLFAV Naive T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*02:01 B2M MHCI -12713 chip0516_462010 9.72 7.59 Chip4 healthy_9 healthy _ 6746 4761 BZLF1-190-197 EBV 0.87 2156 BZLF1-190-197 162 4599 8 EBV BZLF1 RAKFKQLL effector memory T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-B*08:01 B2M MHCI -12714 chip0516_221605 7.09 10.71 Chip4 healthy_10 healthy TGTGCTGTGGAGGGACATTATGGAGGAAGCCAAGGAAATCTCATCTTT CAVEGHYGGSQGNLIF TRAV2*01 TRAJ42*01 124.0 3698.0 TGCGCCAGCAGCCCTTCGATGTCAGAGACCCAGTACTTC CASSPSMSETQYF TRBV5-4*01 TRBJ2-5*01 28.0 2842.0 CAVEGHYGGSQGNLIF_CASSPSMSETQYF 1 6408 NP44-52 FLU 0.88 474 NP44-52 182 6226 7 InfluenzaA NP CTELKLSDY transitional T cells between effector and memory populations PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*01:01 B2M MHCI -12715 chip0516_647421 -3.64 10.08 Chip4 healthy_8 healthy TGTGCAATGAACTACGGAGGCTTCAAAACTATCTTT CAMNYGGFKTIF TRAV14/DV4*01 TRAJ9*01 13.0 1077.0 TGTGCCAGCAGTGAATGGGGGACTAGCGGGGTCAATGAGCAGTTCTTC CASSEWGTSGVNEQFF TRBV25-1*01 TRBJ2-1*01 1.0 17.0 CAMNYGGFKTIF_CASSEWGTSGVNEQFF 1 6594 EBNA3A-193-201 EBV 0.87 1022 EBNA3A-193-201 145 6449 2 EBV EBNA3A FLRGRAYGL Naive T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-B*08:01 B2M MHCI -12716 chip0516_462134 -1.04 9.38 Chip4 healthy_7 healthy _ 6746 6036 PGT-178 PGT 0.83 1480 PGT-178 159 5877 3 HomoSapiens PGT LLAGIGTVPI Naive T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*02:01 B2M MHCI -12717 chip0516_337420 5.23 8.83 Chip4 healthy_7 healthy TGTGCCGTCCAGGGAGGAAAGCTTATCTTC CAVQGGKLIF TRAV12-2*01 TRAJ23*01 4.0 565.0 CAVQGGKLIF_ 1 5430 PGT-178 PGT 1.0 1480 NEG 158 5272 6 HomoSapiens PGT LLAGIGTVPI central memory T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*02:01 B2M MHCI -12718 chip0516_820759 11.26 6.41 Chip4 healthy_6 healthy TGTGCCAGCAGTCCGTTGGGGGGGGCAGATGGCTACACCTTC CASSPLGGADGYTF TRBV6-1*01 TRBJ1-2*01 17.0 1287.0 _CASSPLGGADGYTF 5 8861 EBV-LMP2-FLY EBV 1.0 355 NEG 175 8686 10 EBV LMP2 FLYALALLL effector memory T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*02:01 B2M MHCI -12719 chip0516_690864 10.93 8.84 Chip4 healthy_8 healthy TGCATCCTGCCCCTTGCTGGTGGTACTAGCTATGGAAAGCTGACATTT CILPLAGGTSYGKLTF TRAV26-2*01 TRAJ52*01 34.0 1950.0 CILPLAGGTSYGKLTF_ 55 5208 EBNA3A-193-201 EBV 0.77 1022 EBNA3A-193-201 189 5019 10 EBV EBNA3A FLRGRAYGL effector memory T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-B*08:01 B2M MHCI -12720 chip0516_411607 12.58 6.44 Chip4 healthy_8 healthy TGTGCTGTGACCCTTACCCTCTACTCTGGGGCTGGGAGTTACCAACTCACTTTC CAVTLTLYSGAGSYQLTF TRAV21*01 TRAJ28*01 14.0 746.0 TGTGCCAGCAGTTTAATGGGGACAGGGGGCTTGAGTGAAAAACTGTTTTTT CASSLMGTGGLSEKLFF TRBV28*01 TRBJ1-4*01 72.0 3403.0 CAVTLTLYSGAGSYQLTF_CASSLMGTGGLSEKLFF 19 5883 EBNA3A-158-166 EBV 0.78 444 EBNA3A-158-166 204 5679 10 EBV EBNA3A QAKWRLQTL effector memory T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-B*08:01 B2M MHCI -12721 chip0516_34703 10.04 10.37 Chip4 healthy_8 healthy TGCATCCTGCCCCTTGCTGGTGGTACTAGCTATGGAAAGCTGACATTT CILPLAGGTSYGKLTF TRAV26-2*01 TRAJ52*01 58.0 3590.0 TGTGCCAGCAGCTTAGGACAGGCCTACGAGCAGTACTTC CASSLGQAYEQYF TRBV7-8*01 TRBJ2-7*01 8.0 661.0 CILPLAGGTSYGKLTF_CASSLGQAYEQYF 308 6031 EBNA3A-193-201 EBV 0.91 1022 EBNA3A-193-201 159 5872 9 EBV EBNA3A FLRGRAYGL effector memory T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-B*08:01 B2M MHCI -12722 chip0516_675390 11.65 8.07 Chip4 healthy_8 healthy TGCATCCTGCCCCTTGCTGGTGGTACTAGCTATGGAAAGCTGACATTT CILPLAGGTSYGKLTF TRAV26-2*01 TRAJ52*01 21.0 1547.0 TGTGCCAGCAGCTTAGGACAGGCCTACGAGCAGTACTTC CASSLGQAYEQYF TRBV7-8*01 TRBJ2-7*01 19.0 1212.0 CILPLAGGTSYGKLTF_CASSLGQAYEQYF 308 5707 EBNA3A-193-201 EBV 0.65 1022 EBNA3A-193-201 163 5544 10 EBV EBNA3A FLRGRAYGL effector memory T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-B*08:01 B2M MHCI -12723 chip0516_251525 9.51 11.05 Chip4 healthy_8 healthy TGTGCCAGCAGCTCCGGACAGGCCTACGAGCAGTACTTC CASSSGQAYEQYF TRBV7-8*01 TRBJ2-7*01 28.0 1652.0 _CASSSGQAYEQYF 49 5853 EBNA3A-193-201 EBV 0.94 1022 EBNA3A-193-201 162 5691 9 EBV EBNA3A FLRGRAYGL effector memory T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-B*08:01 B2M MHCI -12724 chip0516_15491 11.28 7.72 Chip4 healthy_8 healthy TGTGCCAGCAGCTTAGGACAGGCCTACGAGCAGTACTTC CASSLGQAYEQYF TRBV7-8*01 TRBJ2-7*01 34.0 2306.0 _CASSLGQAYEQYF 175 5650 EBNA3A-193-201 EBV 0.85 1022 EBNA3A-193-201 165 5485 10 EBV EBNA3A FLRGRAYGL effector memory T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-B*08:01 B2M MHCI -12725 chip0516_335936 7.21 14.4 Chip4 healthy_6 healthy TGTGCAGCAAAAAACACCAATGCAGGCAACTCAACCCTT CAAKNTNAGNSTL TRAV13-1*01 TRAJ27*01 11.0 773.0 TGTGCCAGCAGTTACACCGCAAAGACAGATACTAGCAATCAGCCCCAGCATTTT CASSYTAKTDTSNQPQHF TRBV6-2*01,TRBV6-3*01 TRBJ1-5*01 49.0 1426.0 CAAKNTNAGNSTL_CASSYTAKTDTSNQPQHF 1 3319 M1 FLU 0.85 1250 M1 179 3140 7 InfluenzaA M1 GILGFVFTL transitional T cells between effector and memory populations PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*02:01 B2M MHCI -12726 chip0516_528732 8.71 9.44 Chip4 healthy_8 healthy TGTGCCAGCAGTTTAATGGGGACAGGGGGCTTGAGTGAAAAACTGTTTTTT CASSLMGTGGLSEKLFF TRBV28*01 TRBJ1-4*01 11.0 427.0 _CASSLMGTGGLSEKLFF 18 7099 EBNA3A-158-166 EBV 0.77 444 EBNA3A-158-166 176 6923 8 EBV EBNA3A QAKWRLQTL effector memory T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-B*08:01 B2M MHCI -12727 chip0516_17480 15.92 10.6 Chip4 healthy_8 healthy TGCATCCTGCCCCTTGCTGGTGGTACTAGCTATGGAAAGCTGACATTT CILPLAGGTSYGKLTF TRAV26-2*01 TRAJ52*01 15.0 1058.0 TGTGCCAGCAGCTTAGGACAGGCCTACGAGCAGTACTTC CASSLGQAYEQYF TRBV7-8*01 TRBJ2-7*01 9.0 533.0 CILPLAGGTSYGKLTF_CASSLGQAYEQYF 308 3371 EBNA3A-193-201 EBV 0.8 1022 EBNA3A-193-201 168 3203 12 EBV EBNA3A FLRGRAYGL effector T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-B*08:01 B2M MHCI -12728 chip0516_614871 8.14 9.28 Chip4 healthy_8 healthy _ 6746 7789 BZLF1-190-197 EBV 0.48 2156 BZLF1-190-197 145 7644 8 EBV BZLF1 RAKFKQLL effector memory T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-B*08:01 B2M MHCI -12729 chip0516_645912 7.09 11.89 Chip4 healthy_8 healthy _ 6746 7480 EBNA3A-193-201 EBV 0.94 1022 EBNA3A-193-201 149 7331 7 EBV EBNA3A FLRGRAYGL transitional T cells between effector and memory populations PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-B*08:01 B2M MHCI -12730 chip0516_177521 -2.15 7.24 Chip4 healthy_8 healthy TGTGCAGGGCTCATCATGAAAACCTCCTACGACAAGGTGACATTT CAGLIMKTSYDKVTF TRAV25*01 TRAJ50*01 7.0 481.0 TGTGCCAGCAGTTGGGACGGCGACAATCAGCCCCAGCATTTT CASSWDGDNQPQHF TRBV6-5*01 TRBJ1-5*01 50.0 2367.0 CAGLIMKTSYDKVTF_CASSWDGDNQPQHF 1 7874 BZLF1-190-197 EBV 0.95 2156 BZLF1-190-197 180 7694 3 EBV BZLF1 RAKFKQLL Naive T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-B*08:01 B2M MHCI -12731 chip0516_637147 14.73 11.02 Chip4 healthy_8 healthy TGTGCTCTGAGTGAGGAGATTTATAACCAGGGAGGAAAGCTTATCTTC CALSEEIYNQGGKLIF TRAV19*01 TRAJ23*01 35.0 2210.0 TGTGCCAGCAGCTTAGCCGGGACAGGCTACAATGAGCAGTTCTTC CASSLAGTGYNEQFF TRBV7-2*01 TRBJ2-1*01 28.0 2384.0 CALSEEIYNQGGKLIF_CASSLAGTGYNEQFF 2 3018 EBNA3A-158-166 EBV 1.0 444 NEG 170 2848 12 EBV EBNA3A QAKWRLQTL effector T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-B*08:01 B2M MHCI -12732 chip0516_852015 6.26 12.62 Chip4 healthy_8 healthy TGTGCAATGAGAGATTCTACGGGAGGTAGCAACTATAAACTGACATTT CAMRDSTGGSNYKLTF TRAV14/DV4*01 TRAJ53*01 145.0 5462.0 TGTGCCAGTTCCTCCGTCCCAGATATGAACACTGAAGCTTTCTTT CASSSVPDMNTEAFF TRBV19*01 TRBJ1-1*01 33.0 1983.0 CAMRDSTGGSNYKLTF_CASSSVPDMNTEAFF 5 4781 NP30-38 FLU 0.72 72 NP30-38 183 4598 7 InfluenzaA NP RPIIRPATL transitional T cells between effector and memory populations PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-B*08:01 B2M MHCI -12733 chip0516_788629 8.9 9.2 Chip4 healthy_8 healthy TGTGCAGCAACCTTTTATGGAGGAAGCCAAGGAAATCTCATCTTT CAATFYGGSQGNLIF TRAV29/DV5*01 TRAJ42*01 33.0 2014.0 TGTGCCAGCAGCACCCAGACAGCGCCTGATGATACGCAGTATTTT CASSTQTAPDDTQYF TRBV7-9*01 TRBJ2-3*01 18.0 946.0 CAATFYGGSQGNLIF_CASSTQTAPDDTQYF 3 4324 BZLF1-190-197 EBV 0.7 2156 BZLF1-190-197 167 4157 8 EBV BZLF1 RAKFKQLL effector memory T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-B*08:01 B2M MHCI -12734 chip0516_289502 9.18 9.23 Chip4 healthy_8 healthy _ 6746 8086 EBNA3A-193-201 EBV 0.84 1022 EBNA3A-193-201 173 7913 8 EBV EBNA3A FLRGRAYGL effector memory T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-B*08:01 B2M MHCI -12735 chip0516_151472 5.94 12.72 Chip4 healthy_10 healthy TGTGCTAGCAGCTCCCGACTAGATGATACCGGGGAGCTGTTTTTT CASSSRLDDTGELFF TRBV7-7*01 TRBJ2-2*01 40.0 2962.0 _CASSSRLDDTGELFF 1 5616 NP44-52 FLU 0.89 474 NP44-52 154 5462 7 InfluenzaA NP CTELKLSDY transitional T cells between effector and memory populations PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*01:01 B2M MHCI -12736 chip0516_360616 6.3 13.94 Chip4 healthy_10 healthy TGCCTCGTCTTCAATACTGGAGGCTTCAAAACTATCTTT CLVFNTGGFKTIF TRAV4*01 TRAJ9*01 15.0 1479.0 TGCAGCGTCGATACAGGGGAAGGGGGTGGCTACACCTTC CSVDTGEGGGYTF TRBV29-1*01 TRBJ1-2*01 2.0 38.0 CLVFNTGGFKTIF_CSVDTGEGGGYTF 1 4484 NP380-388 FLU 0.5 60 NP380-388 163 4321 7 InfluenzaA NP ELRSRYWAI transitional T cells between effector and memory populations PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-B*08:01 B2M MHCI -12737 chip0516_90100 10.49 10.97 Chip4 healthy_8 healthy TGCATCCTGCCCCTTGCTGGTGGTACTAGCTATGGAAAGCTGACATTT CILPLAGGTSYGKLTF TRAV26-2*01 TRAJ52*01 19.0 1435.0 TGTGCCAGCAGCTCCGGACAGGCCTACGAGCAGTACCTC CASSSGQAYEQYL TRBV7-8*01 TRBJ2-7*01 8.0 621.0 CILPLAGGTSYGKLTF_CASSSGQAYEQYL 2 6127 EBNA3A-193-201 EBV 0.9 1022 EBNA3A-193-201 165 5962 9 EBV EBNA3A FLRGRAYGL effector memory T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-B*08:01 B2M MHCI -12738 chip0516_733715 -3.89 8.97 Chip4 healthy_7 healthy TGTGTGGTGACCTTATCTAACTTTGGAAATGAGAAATTAACCCTT CVVTLSNFGNEKLTL TRAV12-1*01 TRAJ48*01 50.0 1704.0 CVVTLSNFGNEKLTL_ 1 5977 PGT-178 PGT 0.83 1480 PGT-178 151 5826 2 HomoSapiens PGT LLAGIGTVPI Naive T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*02:01 B2M MHCI -12739 chip0516_447229 11.32 6.74 Chip4 healthy_8 healthy TGCATCCTGCCCCTTGCTGGTGGTACTAGCTATGGAAAGCTGACATTT CILPLAGGTSYGKLTF TRAV26-2*01 TRAJ52*01 23.0 1466.0 TGTGCCAGCAGCTTAGGACAGGCCTACGAGCAGTACTTC CASSLGQAYEQYF TRBV7-8*01 TRBJ2-7*01 28.0 1745.0 CILPLAGGTSYGKLTF_CASSLGQAYEQYF 308 5876 EBNA3A-193-201 EBV 0.94 1022 EBNA3A-193-201 179 5697 10 EBV EBNA3A FLRGRAYGL effector memory T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-B*08:01 B2M MHCI -12740 chip0516_339127 5.96 10.38 Chip4 healthy_10 healthy TGTGCCAGCAGCTTGGGACAGGCTTACGAGCAGTACTTC CASSLGQAYEQYF TRBV7-8*01 TRBJ2-7*01 2.0 64.0 _CASSLGQAYEQYF 175 6452 EBNA3A-193-201 EBV 0.8 1022 EBNA3A-193-201 160 6292 6 EBV EBNA3A FLRGRAYGL central memory T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-B*08:01 B2M MHCI -12741 chip0516_857612 6.14 12.24 Chip4 healthy_8 healthy TGTGTGGTTCACTATAACACCGACAAGCTCATCTTT CVVHYNTDKLIF TRAV12-1*01 TRAJ34*01 2.0 112.0 TGTGCCAGCAGTGAAGCTTGGGGTAATGGCATATATTTT CASSEAWGNGIYF TRBV2*01 TRBJ1-3*01 10.0 503.0 CVVHYNTDKLIF_CASSEAWGNGIYF 1 4497 NP44-52 FLU 0.91 474 NP44-52 134 4363 7 InfluenzaA NP CTELKLSDY transitional T cells between effector and memory populations PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*01:01 B2M MHCI -12742 chip0516_598727 -0.54 7.99 Chip4 healthy_7 healthy TGTGCAATGCTTATATCTAACTTTGGAAATGAGAAATTAACCTTT CAMLISNFGNEKLTF TRAV12-3*01 TRAJ48*01 61.0 2132.0 TGTGCCAGCAGCCCCTTAAACGGGGGGACAGCGGCTCGTGACACCATATATTTT CASSPLNGGTAARDTIYF TRBV3-1*01 TRBJ1-3*01 100.0 4915.0 CAMLISNFGNEKLTF_CASSPLNGGTAARDTIYF 1 7174 PGT-178 PGT 0.82 1480 PGT-178 150 7024 3 HomoSapiens PGT LLAGIGTVPI Naive T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*02:01 B2M MHCI -12743 chip0516_330285 5.3 9.33 Chip4 healthy_7 healthy _ 6746 5415 EBV-LMP2-FLY EBV 0.91 355 NEG 144 5271 6 EBV LMP2 FLYALALLL central memory T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*02:01 B2M MHCI -12744 chip0516_866978 10.47 11.48 Chip4 healthy_6 healthy TGTGCTGTTCTAATGGATAGCAACTATCAGTTAATCTGG CAVLMDSNYQLIW TRAV21*01,TRAV12-3*01 TRAJ33*01 2.0 141.0 CAVLMDSNYQLIW_ 20 4989 EBV-LMP2A EBV 0.91 700 EBV-LMP2A 148 4841 9 EBV LMP2A CLGGLLTMV effector memory T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*02:01 B2M MHCI -12745 chip0516_610659 -0.3 7.47 Chip4 healthy_6 healthy TGTGCTCTAAGTGCAAGAGGGAACAACAGACTCGCTTTT CALSARGNNRLAF TRAV16*01 TRAJ7*01 22.0 1635.0 CALSARGNNRLAF_ 1 9899 PTPRN-482-490 PTPRN 0.86 10 NEG 148 9751 3 HomoSapiens PTPRN SLAAGVKLL Naive T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*02:01 B2M MHCI -12746 chip0516_362166 -0.17 7.98 Chip4 healthy_9 healthy TGTGCAGCAAGCACCCCCTATGGGAACAACAGACTCGCTTTT CAASTPYGNNRLAF TRAV13-1*01 TRAJ7*01 13.0 1258.0 TGTGCCAGCAGTCACACGTCAGAACCTTTCGACAATGAGCAGTTCTTC CASSHTSEPFDNEQFF TRBV6-2*01,TRBV6-3*01 TRBJ2-1*01 12.0 297.0 CAASTPYGNNRLAF_CASSHTSEPFDNEQFF 1 6558 EBNA3A-158-166 EBV 0.42 444 EBNA3A-158-166 149 6409 4 EBV EBNA3A QAKWRLQTL Naive T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-B*08:01 B2M MHCI -12747 chip0516_651336 -0.79 7.28 Chip4 healthy_7 healthy TGTGCCGCCACGGGCTCCGATGGCCCGACGCTGCTCTTT CAATGSDGPTLLF TRAV12-2*01 TRAJ16*01 19.0 1245.0 CAATGSDGPTLLF_ 1 6692 PGT-178 PGT 0.66 1480 PGT-178 183 6509 3 HomoSapiens PGT LLAGIGTVPI Naive T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*02:01 B2M MHCI -12748 chip0516_301541 -4.4 9.43 Chip4 healthy_7 healthy TGTGCCAGCTCGGGACAGGGATACAATGAGCAGTTCTTC CASSGQGYNEQFF TRBV6-1*01 TRBJ2-1*01 24.0 1544.0 _CASSGQGYNEQFF 1 6098 HCVNS4B-1807-1816 HCV 0.62 74 NEG 149 5949 2 HCV NS4B LLFNILGGWV Naive T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*02:01 B2M MHCI -12749 chip0516_767116 -1.5 8.8 Chip4 healthy_10 healthy TGCAGCGTTGACTCTTCTAATGAGCAGTTCTTC CSVDSSNEQFF TRBV29-1*01 TRBJ2-1*01 125.0 14440.0 _CSVDSSNEQFF 1 5334 M1-ALA FLU 0.83 10 M1-ALA 144 5190 4 InfluenzaA M1 ALASCMGLIY Naive T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*01:01 B2M MHCI -12750 chip0516_503864 -4.41 8.88 Chip4 healthy_10 healthy TGTGTGGTGAACAGTTATAACAATGACATGCGCTTT CVVNSYNNDMRF TRAV12-1*01 TRAJ43*01 27.0 2119.0 TGCGCCAGCAGCCAAGCGTTGAGCTACGAGCAGTACTTC CASSQALSYEQYF TRBV4-1*01 TRBJ2-7*01 19.0 899.0 CVVNSYNNDMRF_CASSQALSYEQYF 1 5545 GAD2-VSA-10 GAD65 0.51 21 GAD2-VSA-10 136 5409 2 HomoSapiens GAD2 VSATAGTTVY Naive T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*01:01 B2M MHCI -12751 chip0516_595681 5.92 12.34 Chip4 healthy_8 healthy TGTGCAATGAGAGATTCTACGGGAGGTAGCAACTATAAACTGACATTT CAMRDSTGGSNYKLTF TRAV14/DV4*01 TRAJ53*01 6.0 318.0 TGTGCCAGTTCCTCCGTCCCAGATATGAACACTGAAGCTTTCTTT CASSSVPDMNTEAFF TRBV19*01 TRBJ1-1*01 36.0 1932.0 CAMRDSTGGSNYKLTF_CASSSVPDMNTEAFF 5 8513 NP30-38 FLU 0.49 72 NP30-38 163 8350 7 InfluenzaA NP RPIIRPATL transitional T cells between effector and memory populations PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-B*08:01 B2M MHCI -12752 chip0516_654573 10.12 8.15 Chip4 healthy_10 healthy TGTGCCAGCCGCTTGGGACAGGCTTACGAGCAGTACTTC CASRLGQAYEQYF TRBV7-8*01 TRBJ2-7*01 6.0 98.0 _CASRLGQAYEQYF 2 6429 EBNA3A-193-201 EBV 0.94 1022 EBNA3A-193-201 201 6228 10 EBV EBNA3A FLRGRAYGL effector memory T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-B*08:01 B2M MHCI -12753 chip0516_9729 12.46 6.38 Chip4 healthy_8 healthy TGCATCCTGCCCCTTGCTGGTGGTACTAGCTATGGAAAGCTGACATTT CILPLAGGTSYGKLTF TRAV26-2*01 TRAJ52*01 23.0 986.0 TGTGCCAGCAGCCTAGGACAGGCCTACGAGCAGTACTTC CASSLGQAYEQYF TRBV7-8*01 TRBJ2-7*01 16.0 763.0 CILPLAGGTSYGKLTF_CASSLGQAYEQYF 308 6194 EBNA3A-193-201 EBV 0.77 1022 EBNA3A-193-201 180 6014 10 EBV EBNA3A FLRGRAYGL effector memory T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-B*08:01 B2M MHCI -12754 chip0516_460472 6.86 12.2 Chip4 healthy_8 healthy TGTGCTGTTCCCTCCGGGGGGGACTAGACAAGATCATCTTT CAVPSGgg?GLDKIIF TRAV1-2*01 TRAJ30*01 24.0 1696.0 CAVPSGgg?GLDKIIF_ 1 6710 ZNT8-PTE-9 ZNT8 0.54 18 ZNT8-PTE-9 140 6570 7 HomoSapiens ZNT8 PTEKGANEY transitional T cells between effector and memory populations PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*01:01 B2M MHCI -12755 chip0516_537379 -2.3 9.49 Chip4 healthy_7 healthy TGTGCCAGCAGTCCCCGGGACGTCAATGGGGAGCAGTTCTTC CASSPRDVNGEQFF TRBV27*01 TRBJ2-1*01 30.0 1926.0 _CASSPRDVNGEQFF 1 5751 MART1-ALA MART1 1.0 269 NEG 134 5617 3 HomoSapiens MART1 ALAGIGILTV Naive T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*02:01 B2M MHCI -12756 chip0516_412140 7.15 11.54 Chip4 healthy_8 healthy TGTGCAGCAAGTGAGGCGAATTTTGTCTTT CAASEANFVF TRAV13-1*01 TRAJ26*01 28.0 3183.0 CAASEANFVF_ 1 6936 BZLF1-190-197 EBV 0.93 2156 BZLF1-190-197 151 6785 7 EBV BZLF1 RAKFKQLL transitional T cells between effector and memory populations PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-B*08:01 B2M MHCI -12757 chip0516_166696 10.52 10.14 Chip4 healthy_8 healthy _ 6746 6177 EBNA3A-193-201 EBV 0.84 1022 EBNA3A-193-201 162 6015 9 EBV EBNA3A FLRGRAYGL effector memory T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-B*08:01 B2M MHCI -12758 chip0516_844063 -2.58 11.28 Chip4 healthy_9 healthy TGTGCAGCAAGCCCGACTGGGGGAGCCCAGAAGCTGGTATTT CAASPTGGAQKLVF TRAV29/DV5*01 TRAJ54*01 1.0 56.0 TGTGCCAGCAGCTTAACACTTCTAAATGAGCAGTTCTTC CASSLTLLNEQFF TRBV7-3*01 TRBJ2-1*01 14.0 1040.0 CAASPTGGAQKLVF_CASSLTLLNEQFF 1 4518 BZLF1-190-197 EBV 0.7 2156 BZLF1-190-197 145 4373 1 EBV BZLF1 RAKFKQLL Naive T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-B*08:01 B2M MHCI -12759 chip0516_281530 13.81 9.74 Chip4 healthy_6 healthy _ 6746 6262 EBV-BLMF1 EBV 0.82 2531 NEG 178 6084 12 EBV BLMF1 GLCTLVAML effector T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*02:01 B2M MHCI -12760 chip0516_680253 7.89 11.19 Chip4 healthy_8 healthy _ 6746 6691 EBNA3A-193-201 EBV 0.84 1022 EBNA3A-193-201 141 6550 7 EBV EBNA3A FLRGRAYGL transitional T cells between effector and memory populations PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-B*08:01 B2M MHCI -12761 chip0516_821294 -2.44 10.32 Chip4 healthy_7 healthy _ 6746 5658 PGT-178 PGT 0.76 1480 PGT-178 150 5508 3 HomoSapiens PGT LLAGIGTVPI Naive T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*02:01 B2M MHCI -12762 chip0516_819503 -3.64 12.35 Chip4 healthy_7 healthy TGTGCAATGAGCGGGTCTAACTTTGGAAATGAGAAATTAACCTTT CAMSGSNFGNEKLTF TRAV12-3*01 TRAJ48*01 22.0 962.0 CAMSGSNFGNEKLTF_ 6 4884 PGT-178 PGT 0.46 1480 NEG 174 4710 1 HomoSapiens PGT LLAGIGTVPI Naive T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*02:01 B2M MHCI -12763 chip0516_588549 5.43 9.8 Chip4 healthy_8 healthy TGTGCCAGCAGTTTAATGGGGACAGGGGGCTTGAGTGAAAAACTGTTTTTT CASSLMGTGGLSEKLFF TRBV28*01 TRBJ1-4*01 18.0 712.0 _CASSLMGTGGLSEKLFF 18 5888 EBNA3A-158-166 EBV 0.78 444 NEG 174 5714 6 EBV EBNA3A QAKWRLQTL central memory T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-B*08:01 B2M MHCI -12764 chip0516_765219 -2.41 9.0 Chip4 healthy_9 healthy TGTGCAGGAAGAGGTGACCCATACTCTGGGGCCGGGAGTTACCAACTCACTTTC CAGRGDPYSGAGSYQLTF TRAV25*01 TRAJ28*01 29.0 1677.0 CAGRGDPYSGAGSYQLTF_ 1 6306 EBNA3A-158-166 EBV 0.79 444 EBNA3A-158-166 151 6155 3 EBV EBNA3A QAKWRLQTL Naive T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-B*08:01 B2M MHCI -12765 chip0516_342180 16.23 10.27 Chip4 healthy_6 healthy TGTGCAGCAAGCGGCGGGGGAAGCCAAGGAAATCTAATCTTT CAASGGGSQGNLIF TRAV29/DV5*01 TRAJ42*01 20.0 1986.0 TGTGCCAGCAGTTTAAGTGACGGCCAGAAGTATCAGAGGGGCACCGGGGAGCTGTTTTTT CASSLSDGQKYQRGTGELFF TRBV28*01 TRBJ2-2*01 36.0 1341.0 CAASGGGSQGNLIF_CASSLSDGQKYQRGTGELFF 1 4488 VPR-59-67 HIV 0.54 16 NEG 181 4307 12 HIV-1 VPR AIIRILQQL effector T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*02:01 B2M MHCI -12766 chip0516_816578 -1.31 7.73 Chip4 healthy_7 healthy TGTGCTGTGCAGGCTTATGACCGTGGCGGTGGCAACTCTGTACTGACATTT CAVQAYDRGGGNSVLTF TRAV20*01 TRAJ53*01 7.0 255.0 TGTGCCAGCAGCCAACTTCCGGGAGGGTCCTACGAGCAGTACTTC CASSQLPGGSYEQYF TRBV4-2*01 TRBJ2-7*01 10.0 511.0 CAVQAYDRGGGNSVLTF_CASSQLPGGSYEQYF 1 6200 PREINS-6-14 INS 0.87 20 PREINS-6-14 174 6026 3 HomoSapiens PREINS RLLPLLALL Naive T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*02:01 B2M MHCI -12767 chip0516_217691 9.7 9.72 Chip4 healthy_8 healthy TGTGCAATGATAGGCTCAACCCTGGGGAGGCTATACTTT CAMIGSTLGRLYF TRAV14/DV4*01 TRAJ18*01 2.0 137.0 TGTGCCAGCAGCTTAGTCGACCGAGAGACAGAGACCCAGTACTTC CASSLVDRETETQYF TRBV7-7*01 TRBJ2-5*01 1.0 12.0 CAMIGSTLGRLYF_CASSLVDRETETQYF 1 4798 INS-MAL-8 INS 0.92 38 NEG 171 4627 9 HomoSapiens INS MALWMRLL effector memory T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-B*08:01 B2M MHCI -12768 chip0516_567472 9.47 8.52 Chip4 healthy_6 healthy _ 6746 8211 EBV-LMP2A EBV 0.92 700 EBV-LMP2A 156 8055 8 EBV LMP2A CLGGLLTMV effector memory T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*02:01 B2M MHCI -12769 chip0516_682775 10.52 10.46 Chip4 healthy_6 healthy _ 6746 5882 EBV-LMP2A EBV 0.89 700 EBV-LMP2A 160 5722 9 EBV LMP2A CLGGLLTMV effector memory T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*02:01 B2M MHCI -12770 chip0516_19268 -3.37 8.42 Chip4 tet_neg TGTGCAGCCGATCTCCTCGCTGGTGGCCACAATAAGCTGATTTTT CAADLLAGGHNKLIF TRAV25*01 TRAJ4*01 4.0 62.0 TGTGCCAGCAATTCACCCAATGAGCAGTTCTTC CASNSPNEQFF TRBV27*01 TRBJ2-1*01 39.0 4295.0 CAADLLAGGHNKLIF_CASNSPNEQFF 1 9534 G6PC2-YLK-8 IGRP 0.52 27 G6PC2-YLK-8 157 9377 2 HomoSapiens G6PC2 YLKTNLFL Naive T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-B*08:01 B2M MHCI -12771 chip0516_829598 11.72 11.97 Chip4 healthy_6 healthy TGCGCCAGCAGCGGGGACGGAATGAGCACTGAAGCTTTCTTT CASSGDGMSTEAFF TRBV10-2*01 TRBJ1-1*01 3.0 69.0 _CASSGDGMSTEAFF 1 3711 EBV-LMP2A EBV 0.78 700 NEG 165 3546 11 EBV LMP2A CLGGLLTMV effector T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*02:01 B2M MHCI -12772 chip0516_862247 14.06 11.17 Chip4 healthy_6 healthy TGCAGCGTTGGGGCAGGGGGGACTAATGAAAAACTGTTTTTT CSVGAGGTNEKLFF TRBV29-1*01 TRBJ1-4*01 5.0 303.0 _CSVGAGGTNEKLFF 51 3473 EBV-BLMF1 EBV 0.82 2531 NEG 164 3309 7 EBV BLMF1 GLCTLVAML transitional T cells between effector and memory populations PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*02:01 B2M MHCI -12773 chip0516_393181 6.82 12.29 Chip4 healthy_9 healthy _ 6746 4208 EBNA3A-158-166 EBV 0.61 444 EBNA3A-158-166 151 4057 7 EBV EBNA3A QAKWRLQTL transitional T cells between effector and memory populations PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-B*08:01 B2M MHCI -12774 chip0516_42662 6.9 12.94 Chip4 healthy_10 healthy TGTGCCAGCAGCTCCGAGGAGACAGGGAGCAATCAGCCCCAGCATTTT CASSSEETGSNQPQHF TRBV7-9*01 TRBJ1-5*01 12.0 456.0 _CASSSEETGSNQPQHF 2 4371 EBNA3A-158-166 EBV 0.9 444 EBNA3A-158-166 156 4215 7 EBV EBNA3A QAKWRLQTL transitional T cells between effector and memory populations PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-B*08:01 B2M MHCI -12775 chip0516_345393 -3.37 9.24 Chip4 healthy_7 healthy TGTGCAATGAGCTTCGTCTCCCACCGGTAACCAGTTCTATTTT CAMSFVS??cTGNQFYF TRAV14/DV4*01 TRAJ49*01 10.0 350.0 TGTGCCAGCAGTTCCAATGAAGAGACAGGGAGGGACTATGGCTACACCTTC CASSSNEETGRDYGYTF TRBV28*01 TRBJ1-2*01 22.0 1017.0 CAMSFVS??cTGNQFYF_CASSSNEETGRDYGYTF 1 5520 PGT-178 PGT 0.76 1480 PGT-178 136 5384 2 HomoSapiens PGT LLAGIGTVPI Naive T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*02:01 B2M MHCI -12776 chip0516_858709 10.55 8.03 Chip4 healthy_8 healthy TGCATCCTGCCCCTTGCTGGTGGTACTAGCTATGGAAAGCTGACATTT CILPLAGGTSYGKLTF TRAV26-2*01 TRAJ52*01 2.0 79.0 TGTGCCAGCAGCTTAGGACAGGCCTACGAGCAGTACTTC CASSLGQAYEQYF TRBV7-8*01 TRBJ2-7*01 17.0 711.0 CILPLAGGTSYGKLTF_CASSLGQAYEQYF 308 5395 EBNA3A-193-201 EBV 0.74 1022 EBNA3A-193-201 174 5221 10 EBV EBNA3A FLRGRAYGL effector memory T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-B*08:01 B2M MHCI -12777 chip0516_33502 6.09 13.1 Chip4 healthy_7 healthy _ 6746 5323 M1 FLU 0.82 1250 M1 151 5172 7 InfluenzaA M1 GILGFVFTL transitional T cells between effector and memory populations PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*02:01 B2M MHCI -12778 chip0516_54365 10.78 10.83 Chip4 healthy_6 healthy TGCGCCAGCAGCGGGGACGGAATGAACACTGAAGCTTTCTTT CASSGDGMNTEAFF TRBV10-2*01 TRBJ1-1*01 11.0 593.0 _CASSGDGMNTEAFF 131 6893 EBV-LMP2A EBV 0.91 700 EBV-LMP2A 144 6749 9 EBV LMP2A CLGGLLTMV effector memory T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*02:01 B2M MHCI -12779 chip0516_512942 5.99 13.12 Chip4 healthy_7 healthy TGTGCTGTGGAGGATCTCGGTACTGGCGGCTTCTTAACTATCTTT CAVEDLGTGGFLTIF TRAV2*01 TRAJ9*01 55.0 2953.0 CTGTGCCAGTAGTACGCGGAGCGCCTACGAGCCCCACTTC LCQ*YAga??gcAYEPHF TRBV19*01 TRBJ2-7*01 12.0 1644.0 CAVEDLGTGGFLTIF_LCQ*YAga??gcAYEPHF 1 5355 M1 FLU 0.91 1250 M1 161 5194 7 InfluenzaA M1 GILGFVFTL transitional T cells between effector and memory populations PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*02:01 B2M MHCI -12780 chip0516_556706 -3.33 9.67 Chip4 healthy_7 healthy TGTTCCGTGGGGGACGGCCAGAAGCTGCTCTTT CSVGDGQKLLF TRAV12-2*01 TRAJ16*01 5.0 535.0 TGTGCCAGCAGTGTAGGGACAGGGAATGGCTACACCTTC CASSVGTGNGYTF TRBV25-1*01 TRBJ1-2*01 76.0 5813.0 CSVGDGQKLLF_CASSVGTGNGYTF 1 4747 MART1-ALA MART1 0.6 269 MART1-ALA 146 4601 2 HomoSapiens MART1 ALAGIGILTV Naive T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*02:01 B2M MHCI -12781 chip0516_487037 0.1 9.04 Chip4 healthy_7 healthy TGTGCAATGAGAGGGGTCACAGAAGGTAGCAACTATAAACTGACATTT CAMRGVTEGSNYKLTF TRAV14/DV4*01 TRAJ53*01 9.0 280.0 TGTGCCAGTAGTATTTACGCGGCAACCTACGAGCAGTACTTC CASSIYAATYEQYF TRBV19*01 TRBJ2-7*01 7.0 240.0 CAMRGVTEGSNYKLTF_CASSIYAATYEQYF 1 5356 GAG-77-86 HIV 1.0 15 NEG 143 5213 4 HIV-1 GAG SLYNTVATLY Naive T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*02:01 B2M MHCI -12782 chip0516_160705 11.28 6.89 Chip4 healthy_7 healthy TGTGCCAGCAGTTACCAGGGAGGTAACTATGGCTACACCTTC CASSYQGGNYGYTF TRBV6-5*01 TRBJ1-2*01 18.0 1266.0 _CASSYQGGNYGYTF 4 5864 EBV-LMP2-FLY EBV 0.91 355 EBV-LMP2-FLY 172 5692 6 EBV LMP2 FLYALALLL central memory T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*02:01 B2M MHCI -12783 chip0516_561634 10.0 9.43 Chip4 healthy_6 healthy TGTGCTGTTCTAATGGATAGCAACTATCAGTTAATCTGG CAVLMDSNYQLIW TRAV21*01 TRAJ33*01 29.0 2052.0 CAVLMDSNYQLIW_ 20 7757 EBV-LMP2A EBV 0.89 700 EBV-LMP2A 145 7612 9 EBV LMP2A CLGGLLTMV effector memory T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*02:01 B2M MHCI -12784 chip0516_255323 -1.83 8.49 Chip4 healthy_7 healthy TGTGCAATGAGCGCGTCAAACTTTGGAAATGAGAAATTAACCTTT CAMSASNFGNEKLTF TRAV12-3*01 TRAJ48*01 56.0 1538.0 TGCGCCAGCAGTCAAGCCCCCCCACAATGAGCGGTTCTTC CASSQAcc??ccHNERFF TRBV4-3*01 TRBJ2-1*01 108.0 8872.0 CAMSASNFGNEKLTF_CASSQAcc??ccHNERFF 1 6212 PGT-178 PGT 0.63 1480 PGT-178 141 6071 3 HomoSapiens PGT LLAGIGTVPI Naive T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*02:01 B2M MHCI -12785 chip0516_452189 -2.16 9.09 Chip4 healthy_8 healthy TGTGCCGTGATCACCGGTAACCAGTTCTATTTT CAVITGNQFYF TRAV12-2*01 TRAJ49*01 15.0 1091.0 GGTGCCAGCAGTGAAGAAGGATCACCCCCATCGAAGCTTTCTTT GASSEEGt?cTPIEAFF TRBV25-1*01 TRBJ1-1*01 7.0 907.0 CAVITGNQFYF_GASSEEGt?cTPIEAFF 1 7086 BZLF1-190-197 EBV 0.65 2156 NEG 156 6930 3 EBV BZLF1 RAKFKQLL Naive T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-B*08:01 B2M MHCI -12786 chip0516_219008 11.5 7.04 Chip4 healthy_8 healthy TGCATCCTGCCCCTTGCTGGTGGTACTAGCTATGGAAAGCTGACATTT CILPLAGGTSYGKLTF TRAV26-2*01 TRAJ52*01 56.0 3112.0 TGTGCCAGCAGCTTAGGACAGGCCTACGAGCAGTACTTC CASSLGQAYEQYF TRBV7-8*01 TRBJ2-7*01 10.0 621.0 CILPLAGGTSYGKLTF_CASSLGQAYEQYF 308 5346 EBNA3A-193-201 EBV 0.71 1022 EBNA3A-193-201 169 5177 10 EBV EBNA3A FLRGRAYGL effector memory T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-B*08:01 B2M MHCI -12787 chip0516_686309 -1.81 7.75 Chip4 healthy_9 healthy TGTGCTCCGCCAACTAACTTTGGAAATGAGAAATTAACCTTT CAPPTNFGNEKLTF TRAV9-2*01 TRAJ48*01 31.0 1962.0 TGTGCTCTGAGGACCTACACCGGTAACCAGTTCTATTTT CALRTYTGNQFYF TRAV19*01 TRAJ49*01 23.0 1988.0 0.34 CAPPTNFGNEKLTF_ 1 5284 LMP2A-CPL EBV 0.52 44 LMP2A-CPL 136 5148 3 EBV LMP2A CPLSKILL Naive T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-B*08:01 B2M MHCI -12788 chip0516_288271 -3.95 7.48 Chip4 healthy_8 healthy _ 6746 6801 BZLF1-190-197 EBV 0.87 2156 BZLF1-190-197 128 6673 2 EBV BZLF1 RAKFKQLL Naive T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-B*08:01 B2M MHCI -12789 chip0516_834958 12.29 7.09 Chip4 healthy_8 healthy TGCATCCTGCCCCTTGCTGGTGGTACTAGCTATGGAAAGCTGACATTT CILPLAGGTSYGKLTF TRAV26-2*01 TRAJ52*01 2.0 103.0 TGTGCCAGCAGCTCCGGACAGGCCTACGAGCAGTACTTC CASSSGQAYEQYF TRBV7-8*01 TRBJ2-7*01 3.0 282.0 CILPLAGGTSYGKLTF_CASSSGQAYEQYF 40 5362 EBNA3A-193-201 EBV 0.92 1022 EBNA3A-193-201 186 5176 10 EBV EBNA3A FLRGRAYGL effector memory T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-B*08:01 B2M MHCI -12790 chip0516_556325 -2.77 8.81 Chip4 healthy_6 healthy _ 6746 7418 MART1-A28L MART1 0.75 84 NEG 137 7281 2 HomoSapiens MART1 ALGIGILTV Naive T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*02:01 B2M MHCI -12791 chip0516_494187 11.71 7.08 Chip4 healthy_8 healthy TGTGCCAGCAGCTTAGGACAGGCCTACGAGCAGTACTTC CASSLGQAYEQYF TRBV7-8*01 TRBJ2-7*01 16.0 845.0 _CASSLGQAYEQYF 175 5212 EBNA3A-193-201 EBV 0.89 1022 EBNA3A-193-201 188 5024 10 EBV EBNA3A FLRGRAYGL effector memory T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-B*08:01 B2M MHCI -12792 chip0516_148011 5.42 10.84 Chip4 healthy_6 healthy TGTGGAGCCGAAGGGTGGTGGAGGTAGCAACTCTAAACTGCCCTTG CGAEGWWag??gtSNSKLPL TRAV34*01 TRAJ53*01 4.0 177.0 CGAEGWWag??gtSNSKLPL_ 1 8166 EBV-LMP1-1 EBV 0.9 237 EBV-LMP1-1 154 8012 6 EBV LMP1 YLLEMLWRL central memory T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*02:01 B2M MHCI -12793 chip0516_174484 -0.56 9.32 Chip4 healthy_7 healthy TGTGCCTCCACCGGCACTGCCAGTAAACTCACCTTT CASTGTASKLTF TRAV12-2*01 TRAJ44*01 13.0 1147.0 TGCAGTGCTACACCTGGACAGGCGTGGGAGCTGTTTTTT CSATPGQAWELFF TRBV20-1*01 TRBJ2-2*01 21.0 1647.0 CASTGTASKLTF_CSATPGQAWELFF 1 4421 MART1-ALA MART1 0.92 269 NEG 138 4283 4 HomoSapiens MART1 ALAGIGILTV Naive T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*02:01 B2M MHCI -12794 chip0516_742731 8.37 11.13 Chip4 healthy_8 healthy _ 6746 6657 BZLF1-190-197 EBV 0.82 2156 BZLF1-190-197 159 6498 7 EBV BZLF1 RAKFKQLL transitional T cells between effector and memory populations PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-B*08:01 B2M MHCI -12795 chip0516_836764 -1.7 9.09 Chip4 healthy_8 healthy TGTGCAGCAAGCACCGGTAACCAGTTCTATTTT CAASTGNQFYF TRAV29/DV5*01 TRAJ49*01 21.0 2215.0 TGTGCCAGCAGTTTTGAGGGAGCAGTAAACACCATATATTTT CASSFEGAVNTIYF TRBV12-3*01,TRBV12-4*01 TRBJ1-3*01 10.0 336.0 CAASTGNQFYF_CASSFEGAVNTIYF 1 4712 IAPP-STN-9 IAPP 0.88 48 NEG 155 4557 4 HomoSapiens IAPP STNVGSNTY Naive T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*01:01 B2M MHCI -12796 chip0516_486417 11.05 8.18 Chip4 healthy_8 healthy TGCATCCTGCCCCTTGCTGGTGGTACTAGCTATGGAAAGCTGACATTT CILPLAGGTSYGKLTF TRAV26-2*01 TRAJ52*01 35.0 1656.0 TGTGCCAGCAGCTTAGGACAGGCCTACGAGCAGTACTTC CASSLGQAYEQYF TRBV7-8*01 TRBJ2-7*01 32.0 1966.0 CILPLAGGTSYGKLTF_CASSLGQAYEQYF 308 6418 EBNA3A-193-201 EBV 0.97 1022 EBNA3A-193-201 156 6262 10 EBV EBNA3A FLRGRAYGL effector memory T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-B*08:01 B2M MHCI -12797 chip0516_60860 -2.34 7.55 Chip4 healthy_6 healthy TGTGCAGCCGCCCTATCTAACTTTGGAAATGAGAAATTAACCTTT CAAALSNFGNEKLTF TRAV12-3*01 TRAJ48*01 1.0 28.0 TGTGCCAGCAGTTTATCCAGCGGGGATAACACCGGGGAGCTGTTTTTT CASSLSSGDNTGELFF TRBV27*01 TRBJ2-2*01 41.0 2762.0 CAAALSNFGNEKLTF_CASSLSSGDNTGELFF 1 10254 PGT-178 PGT 0.83 1480 PGT-178 142 10112 2 HomoSapiens PGT LLAGIGTVPI Naive T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*02:01 B2M MHCI -12798 chip0516_570907 9.13 9.3 Chip4 healthy_6 healthy _ 6746 6060 EBV-LMP2A EBV 1.0 700 EBV-LMP2A 173 5887 8 EBV LMP2A CLGGLLTMV effector memory T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*02:01 B2M MHCI -12799 chip0516_195816 -2.01 8.09 Chip4 healthy_8 healthy TGTGCTGGGCGTGAGAGCAACACAGGCAAACTAATCTTT CAGRESNTGKLIF TRAV35*01 TRAJ37*01 27.0 1734.0 TGTGCATCTCCGCGTCTAAATACTCTGGTTCTGCAAGGCAACTGACCTTT CASPRLNTc?tGSARQLTF TRAV25*01 TRAJ22*01 30.0 1806.0 0.4 TGTGCCAGCAGTTTAGTAAGAGGGGGCGAGGAGACCCAGTACTTC CASSLVRGGEETQYF TRBV27*01 TRBJ2-5*01 50.0 2953.0 CAGRESNTGKLIF_CASSLVRGGEETQYF 1 6237 EBNA3A-158-166 EBV 0.81 444 EBNA3A-158-166 154 6083 3 EBV EBNA3A QAKWRLQTL Naive T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-B*08:01 B2M MHCI -12800 chip0516_881086 8.99 9.24 Chip4 healthy_6 healthy TGTGCCAGCAGCTCGGGACAGGGGGACAATGAGCAGTTCTTC CASSSGQGDNEQFF TRBV11-2*01 TRBJ2-1*01 7.0 245.0 _CASSSGQGDNEQFF 12 3847 EBV-BLMF1 EBV 0.86 2531 NEG 159 3688 8 EBV BLMF1 GLCTLVAML effector memory T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*02:01 B2M MHCI -12801 chip0516_790477 10.81 10.6 Chip4 healthy_6 healthy TGCGCCAGCAGCGGGGACGGAATGAACACTGAAGCTTTCTTT CASSGDGMNTEAFF TRBV10-2*01 TRBJ1-1*01 11.0 700.0 _CASSGDGMNTEAFF 131 6330 EBV-LMP2A EBV 0.89 700 EBV-LMP2A 137 6193 9 EBV LMP2A CLGGLLTMV effector memory T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*02:01 B2M MHCI -12802 chip0516_563611 12.49 7.36 Chip4 healthy_8 healthy TGCATCCTGCCCCTTGCTGGTGGTACTAGCTATGGAAAGCTGACATTT CILPLAGGTSYGKLTF TRAV26-2*01 TRAJ52*01 31.0 1858.0 TGTGCCAGCAGCTTAGGACAGGCCTACGAGCAGTACTTC CASSLGQAYEQYF TRBV7-8*01 TRBJ2-7*01 26.0 1458.0 CILPLAGGTSYGKLTF_CASSLGQAYEQYF 308 5438 EBNA3A-193-201 EBV 0.73 1022 EBNA3A-193-201 173 5265 10 EBV EBNA3A FLRGRAYGL effector memory T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-B*08:01 B2M MHCI -12803 chip0516_201290 12.89 12.82 Chip4 healthy_7 healthy _ 6746 2833 EBV-BLMF1 EBV 0.8 2531 EBV-BLMF1 162 2671 11 EBV BLMF1 GLCTLVAML effector T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*02:01 B2M MHCI -12804 chip0516_466880 9.61 9.61 Chip4 healthy_8 healthy TGTGCAATGAGGTGCCACACTCATGTTT CAMRtg??ccTLMF TRAV14/DV4*01 TRAJ31*01 2.0 90.0 CAMRtg??ccTLMF_ 1 6946 EBNA3A-193-201 EBV 0.93 1022 EBNA3A-193-201 143 6803 8 EBV EBNA3A FLRGRAYGL effector memory T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-B*08:01 B2M MHCI -12805 chip0516_761316 -1.24 7.25 Chip4 healthy_7 healthy TGTGCCAGTATGGACAGGACGGATCAGCCCCAGCATTTT CASMDRTDQPQHF TRBV19*01 TRBJ1-5*01 30.0 1434.0 _CASMDRTDQPQHF 1 6547 GAD65-114-122 GAD65 0.78 63 NEG 153 6394 3 HomoSapiens GAD65 VMNILLQYV Naive T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*02:01 B2M MHCI -12806 chip0516_653599 15.88 11.6 Chip4 healthy_9 healthy TGTGCAGCAAGCGATGGCACATGTGCCATTAACCTTT CAASDG??aHVPLTF TRAV29/DV5*01 TRAJ48*01 27.0 1998.0 CAASDG??aHVPLTF_ 1 2605 BZLF1-190-197 EBV 0.61 2156 BZLF1-190-197 167 2438 12 EBV BZLF1 RAKFKQLL effector T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-B*08:01 B2M MHCI -12807 chip0516_424881 5.38 9.18 Chip4 healthy_8 healthy TGCATCCTGCCCCTTGCTGGTGGTACTAGCTATGGAAAGCTGACATTT CILPLAGGTSYGKLTF TRAV26-2*01 TRAJ52*01 25.0 1450.0 TGTGCCAGCAGCTTAGGACAGGCCTACGAGCAGTACTTC CASSLGQAYEQYF TRBV7-8*01 TRBJ2-7*01 1.0 43.0 CILPLAGGTSYGKLTF_CASSLGQAYEQYF 308 5774 EBNA3A-193-201 EBV 0.9 1022 EBNA3A-193-201 167 5607 6 EBV EBNA3A FLRGRAYGL central memory T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-B*08:01 B2M MHCI -12808 chip0516_803639 -3.91 8.33 Chip4 healthy_8 healthy TGTGCTCTCCAAACTGGGGCAAACAACCTCTTCTTT CALQTGANNLFF TRAV16*01 TRAJ36*01 9.0 876.0 TGCAGTGCTAGTCAGGGGTTCGGGGGTAGCAATCAGCCCTAGCACTTT CSASQGFGGSNQP*HF TRBV20-1*01 TRBJ1-5*01 3.0 117.0 CALQTGANNLFF_CSASQGFGGSNQP*HF 1 4447 IAPP-LNH-9 IAPP 0.95 15 IAPP-LNH-9 149 4298 2 HomoSapiens IAPP LNHLKATPI Naive T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-B*08:01 B2M MHCI -12809 chip0516_129964 5.69 12.76 Chip4 healthy_8 healthy _ 6746 9556 NP30-38 FLU 0.71 72 NP30-38 161 9395 7 InfluenzaA NP RPIIRPATL transitional T cells between effector and memory populations PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-B*08:01 B2M MHCI -12810 chip0516_589294 -3.77 9.38 Chip4 healthy_9 healthy _ 6746 5135 GAD2-FQQ-9 GAD65 0.85 10 GAD2-FQQ-9 147 4988 2 HomoSapiens GAD2 FQQDKHYDL Naive T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-B*08:01 B2M MHCI -12811 chip0516_139793 -3.67 8.56 Chip4 healthy_7 healthy TGTGCAATGAGCGGGGACGGAAAGCTGACATTT CAMSGDGKLTF TRAV12-3*01 TRAJ52*01 34.0 3718.0 TGTGCCAGCAGCGCACCACTTAGCGGTAACAATGAGCAGTTCTTC CASSAPLSGNNEQFF TRBV6-2*01,TRBV6-3*01 TRBJ2-1*01 18.0 895.0 CAMSGDGKLTF_CASSAPLSGNNEQFF 1 5860 PGT-178 PGT 0.71 1480 NEG 130 5730 2 HomoSapiens PGT LLAGIGTVPI Naive T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*02:01 B2M MHCI -12812 chip0516_56140 -2.16 8.64 Chip4 healthy_6 healthy TGTGCAATGAGCGTGTCTAACTTTGGAAATGAGAAATTAACCTTT CAMSVSNFGNEKLTF TRAV12-3*01 TRAJ48*01 30.0 948.0 TGTGCCAGCAGCCAAGATCGCTCGACTAGCGGGGATATTGAGCAGTTCTTC CASSQDRSTSGDIEQFF TRBV3-1*01 TRBJ2-1*01 44.0 2580.0 CAMSVSNFGNEKLTF_CASSQDRSTSGDIEQFF 1 6431 PGT-178 PGT 0.74 1480 NEG 142 6289 3 HomoSapiens PGT LLAGIGTVPI Naive T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*02:01 B2M MHCI -12813 chip0516_189245 -2.79 12.32 Chip4 healthy_8 healthy TGTGTGGCTATGGCAGGAACTGCTCTGATCTTT CVAMAGTALIF TRAV12-1*01 TRAJ15*01 14.0 1597.0 TGTGCCAGCAGCTCTGATCCGAACAATGAGCAGTTCTTC CASSSDPNNEQFF TRBV3-1*01 TRBJ2-1*01 40.0 3865.0 CVAMAGTALIF_CASSSDPNNEQFF 1 4422 ZNT8-YAY-8 ZNT8 0.83 54 ZNT8-YAY-8 197 4225 1 HomoSapiens ZNT8 YAYAKWKL Naive T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-B*08:01 B2M MHCI -12814 chip0516_242057 12.89 8.48 Chip4 healthy_8 healthy TGTGCCGTGAAGACGGACACCAATGCAGGCAAATCAACCTTT CAVKTDTNAGKSTF TRAV12-2*01 TRAJ27*01 34.0 2042.0 CAVKTDTNAGKSTF_ 20 3402 EBNA3A-193-201 EBV 0.54 1022 EBNA3A-193-201 165 3237 10 EBV EBNA3A FLRGRAYGL effector memory T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-B*08:01 B2M MHCI -12815 chip0516_98708 8.84 8.53 Chip4 healthy_8 healthy TGTGCTCTGAGTGAGGAGATTTATAACCAGGGAGGAAAGCTTATCTTC CALSEEIYNQGGKLIF TRAV19*01 TRAJ23*01 71.0 2324.0 CALSEEIYNQGGKLIF_ 1 6350 EBNA3A-158-166 EBV 0.92 444 NEG 184 6166 8 EBV EBNA3A QAKWRLQTL effector memory T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-B*08:01 B2M MHCI -12816 chip0516_476216 15.34 12.69 Chip4 healthy_8 healthy TGTGCCAGCAGCTCCGGACAGGCCTACGAGCAGTACTTC CASSSGQAYEQYF TRBV7-8*01 TRBJ2-7*01 16.0 1455.0 _CASSSGQAYEQYF 49 2660 EBNA3A-193-201 EBV 0.9 1022 EBNA3A-193-201 147 2513 12 EBV EBNA3A FLRGRAYGL effector T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-B*08:01 B2M MHCI -12817 chip0516_467020 -2.5 7.87 Chip4 healthy_9 healthy TGTGCCAGCAGCGCCGCGGACAGAAGCTCCTACAATGAGCAGTTCTTC CASSAADRSSYNEQFF TRBV5-4*01 TRBJ2-1*01 31.0 1958.0 _CASSAADRSSYNEQFF 1 6943 EBNA3A-158-166 EBV 0.85 444 EBNA3A-158-166 149 6794 2 EBV EBNA3A QAKWRLQTL Naive T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-B*08:01 B2M MHCI -12818 chip0516_860343 10.83 10.52 Chip4 healthy_8 healthy TGCATCCTGCCCCTTGCTGGTGGTACTAGCCATGGAAAGCTGACATTT CILPLAGGTSHGKLTF TRAV26-2*01 TRAJ52*01 31.0 1494.0 TGTGCCAGCAGCTTAGGACAGGCCTACGAGCAGTACTTC CASSLGQAYEQYF TRBV7-8*01 TRBJ2-7*01 9.0 327.0 CILPLAGGTSHGKLTF_CASSLGQAYEQYF 2 6826 EBNA3A-193-201 EBV 0.71 1022 EBNA3A-193-201 145 6681 9 EBV EBNA3A FLRGRAYGL effector memory T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-B*08:01 B2M MHCI -12819 chip0516_150811 -1.25 7.63 Chip4 healthy_6 healthy TCTGTGGTGACCTTATAGTAGAGGTAGCCGCTGTATCCTGTCATTT SVVTL**ag??gtSRCILSF TRAV12-1*01 TRAJ53*01 51.0 3119.0 TGTGCCAGCAGTCCCGGGACAGGGGTACCTGAGCAGTACTTC CASSPGTGVPEQYF TRBV28*01 TRBJ2-7*01 19.0 1081.0 SVVTL**ag??gtSRCILSF_CASSPGTGVPEQYF 1 10518 PGT-178 PGT 0.67 1480 PGT-178 145 10373 3 HomoSapiens PGT LLAGIGTVPI Naive T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*02:01 B2M MHCI -12820 chip0516_653352 15.71 10.28 Chip4 healthy_8 healthy TGTGCTGTGGACCGCTTCAACAAATTTTACTTT CAVDRFNKFYF TRAV12-1*01 TRAJ21*01 8.0 580.0 TGTGCTGTGAGTAGAATGGCCAGAAGCTGCTCTTT CAVSRat?GQKLLF TRAV8-4*01 TRAJ16*01 18.0 2058.0 0.6 CAVDRFNKFYF_ 1 5076 NP44-52 FLU 0.78 474 NP44-52 168 4908 12 InfluenzaA NP CTELKLSDY effector T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*01:01 B2M MHCI -12821 chip0516_436261 9.85 9.89 Chip4 healthy_6 healthy TGCGCCAGCAGCGGGGACGGAATGAACACTGAAGCTTTCTTT CASSGDGMNTEAFF TRBV10-2*01 TRBJ1-1*01 2.0 89.0 _CASSGDGMNTEAFF 131 5161 EBV-LMP2A EBV 1.0 700 EBV-LMP2A 152 5009 9 EBV LMP2A CLGGLLTMV effector memory T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*02:01 B2M MHCI -12822 chip0516_751893 10.74 8.81 Chip4 healthy_8 healthy _ 6746 5522 EBNA3A-158-166 EBV 0.44 444 NEG 172 5350 10 EBV EBNA3A QAKWRLQTL effector memory T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-B*08:01 B2M MHCI -12823 chip0516_447163 -1.31 7.64 Chip4 healthy_6 healthy TGTGGCGACTTTGGGCTGGTTCTGCAGGGTTACTGACTTTT CGDFGLgt?SAGLLTF TRAV6*01 TRAJ22*01 5.0 282.0 TGTGCCAGCAGTCCGGGCGCGGGACAGGACTACGAGCAGTACTTC CASSPGAGQDYEQYF TRBV27*01 TRBJ2-7*01 26.0 1989.0 CGDFGLgt?SAGLLTF_CASSPGAGQDYEQYF 1 8821 HCVNS3-1073-1081 HCV 0.61 36 NEG 149 8672 3 HCV NS3 CINGVCWTV Naive T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*02:01 B2M MHCI -12824 chip0516_678248 13.38 8.0 Chip4 healthy_8 healthy TGTGCCAGCAGCTTCGGAGTGGGGGAGGGCACTGAAGCTTTCTTT CASSFGVGEGTEAFF TRBV7-3*01 TRBJ1-1*01 18.0 988.0 _CASSFGVGEGTEAFF 3 3772 BZLF1-190-197 EBV 0.98 2156 BZLF1-190-197 153 3619 10 EBV BZLF1 RAKFKQLL effector memory T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-B*08:01 B2M MHCI -12825 chip0516_746907 -3.62 7.18 Chip4 healthy_6 healthy _ 6746 8569 MART1-ALA MART1 0.87 269 NEG 126 8443 2 HomoSapiens MART1 ALAGIGILTV Naive T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*02:01 B2M MHCI -12826 chip0516_859366 5.97 10.99 Chip4 healthy_8 healthy TGTGCCAGCAGTTTAATGGGGACAGGGGGCTTGAGTGAAAAACTGTTTTTT CASSLMGTGGLSEKLFF TRBV28*01 TRBJ1-4*01 50.0 1936.0 _CASSLMGTGGLSEKLFF 18 8893 EBNA3A-158-166 EBV 0.79 444 EBNA3A-158-166 152 8741 6 EBV EBNA3A QAKWRLQTL central memory T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-B*08:01 B2M MHCI -12827 chip0516_524406 -1.33 10.03 Chip4 healthy_9 healthy _ 6746 6314 ZNT8-YAK-9 ZNT8 0.47 59 NEG 140 6174 3 HomoSapiens ZNT8 YAKWKLCSA Naive T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-B*08:01 B2M MHCI -12828 chip0516_799099 6.07 12.47 Chip4 healthy_10 healthy TGTGCCAGCAGCTTGGATTCCGGGACTAGCCGCTACGAGCAGTACTTC CASSLDSGTSRYEQYF TRBV5-4*01 TRBJ2-7*01 27.0 1862.0 _CASSLDSGTSRYEQYF 1 6570 NP44-52 FLU 0.93 474 NP44-52 147 6423 7 InfluenzaA NP CTELKLSDY transitional T cells between effector and memory populations PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*01:01 B2M MHCI -12829 chip0516_876798 -3.36 9.06 Chip4 healthy_6 healthy _ 6746 7311 HCVNS3-1073-1081 HCV 0.91 36 NEG 137 7174 2 HCV NS3 CINGVCWTV Naive T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*02:01 B2M MHCI -12830 chip0516_764792 6.97 10.75 Chip4 healthy_7 healthy TGTGCAATGGGACGGTAACCAGTTCTATTTT CAMGR??tNQFYF TRAV12-3*01 TRAJ49*01 2.0 68.0 CAMGR??tNQFYF_ 1 6742 M1 FLU 0.86 1250 M1 181 6561 7 InfluenzaA M1 GILGFVFTL transitional T cells between effector and memory populations PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*02:01 B2M MHCI -12831 chip0516_86003 -1.16 10.1 Chip4 healthy_7 healthy TGTGCCAGTAGTATTTACGGAGGCTCTGGAAACACCATATATTTT CASSIYGGSGNTIYF TRBV19*01 TRBJ1-3*01 45.0 2345.0 _CASSIYGGSGNTIYF 1 5779 ZNT8-293-300 ZNT8 0.74 17 NEG 149 5630 3 HomoSapiens ZNT8 LAVDGVLSV Naive T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*02:01 B2M MHCI -12832 chip0516_477772 4.96 10.64 Chip4 healthy_8 healthy TGTGCTGTGACCCTTACCCTCTACTCTGGGGCTGGGAGGTACCAACTCACTTTC CAVTLTLYSGAGRYQLTF TRAV21*01 TRAJ28*01 2.0 38.0 TGTGCCAGCAGTTTAATGGGGACAGGGGGCTTGAGTGAAAAACTGTTTTTT CASSLMGTGGLSEKLFF TRBV28*01 TRBJ1-4*01 16.0 687.0 CAVTLTLYSGAGRYQLTF_CASSLMGTGGLSEKLFF 2 6198 EBNA3A-158-166 EBV 0.63 444 EBNA3A-158-166 145 6053 6 EBV EBNA3A QAKWRLQTL central memory T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-B*08:01 B2M MHCI -12833 chip0516_44249 -2.78 8.37 Chip4 healthy_6 healthy TGTGCAATGAGCAGGTCTAACTTTGGAAATGAGAAATTAACCTTT CAMSRSNFGNEKLTF TRAV12-3*01 TRAJ48*01 1.0 45.0 TGTGCCAGCAGCTTTTCGGATGTGTCCGGGGCCCCATTGAGGGCAGATACGCAGTATTTT CASSFSDVSGAPLRADTQYF TRBV7-8*01 TRBJ2-3*01 32.0 1131.0 CAMSRSNFGNEKLTF_CASSFSDVSGAPLRADTQYF 1 7036 PGT-178 PGT 0.57 1480 PGT-178 138 6898 2 HomoSapiens PGT LLAGIGTVPI Naive T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*02:01 B2M MHCI -12834 chip0516_517928 14.15 8.16 Chip4 healthy_6 healthy TGTGCAGAGGACCATGCACTCAACTTC CAEDHALNF TRAV23/DV6*01 TRAJ41*01 1.0 33.0 TGTGCCAGCAGCTCGGGACAGGGGGACAATGAGCAGTTCTTC CASSSGQGDNEQFF TRBV11-2*01,TRBV11-3*01 TRBJ2-1*01 2.0 67.0 CAEDHALNF_CASSSGQGDNEQFF 6 3186 EBV-BLMF1 EBV 0.94 2531 EBV-BLMF1 162 3024 10 EBV BLMF1 GLCTLVAML effector memory T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*02:01 B2M MHCI -12835 chip0516_277690 13.56 6.71 Chip4 healthy_6 healthy TGTGCCAGCAGCTCGGGACAGGGGGACAATGAGCAGTTCTTC CASSSGQGDNEQFF TRBV11-3*01 TRBJ2-1*01 16.0 1224.0 _CASSSGQGDNEQFF 12 4375 EBV-BLMF1 EBV 0.44 2531 NEG 179 4196 10 EBV BLMF1 GLCTLVAML effector memory T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*02:01 B2M MHCI -12836 chip0516_691970 12.13 13.41 Chip4 healthy_7 healthy TGTGCAGAGAGTATCGGCAAGATCATCTTT CAESIGKIIF TRAV5*01 TRAJ30*01 1.0 22.0 TGCAGCGTTGGGACAGGGGGAACTACTGAAAAACTGTTTTTT CSVGTGGTTEKLFF TRBV29-1*01 TRBJ1-4*01 2.0 238.0 CAESIGKIIF_CSVGTGGTTEKLFF 1 2246 EBV-BLMF1 EBV 0.6 2531 NEG 143 2103 11 EBV BLMF1 GLCTLVAML effector T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*02:01 B2M MHCI -12837 chip0516_580749 5.91 12.04 Chip4 healthy_8 healthy TGTGCAATGAGAGATTCTACGGGAGGTAGCAACTATAAACTGACATTT CAMRDSTGGSNYKLTF TRAV14/DV4*01 TRAJ53*01 1.0 128.0 TGTGCCAGTTCCTCCGTCCCAGATATGAACACTGAAGCTTTCTTT CASSSVPDMNTEAFF TRBV19*01 TRBJ1-1*01 46.0 2325.0 CAMRDSTGGSNYKLTF_CASSSVPDMNTEAFF 5 7393 NP30-38 FLU 0.77 72 NP30-38 142 7251 7 InfluenzaA NP RPIIRPATL transitional T cells between effector and memory populations PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-B*08:01 B2M MHCI -12838 chip0516_78282 15.42 9.27 Chip4 healthy_8 healthy TGCATCCTGCCCCTTGCTGGTGGTACTAGCTATGGAAAGCTGACATTT CILPLAGGTSYGKLTF TRAV26-2*01 TRAJ52*01 1.0 57.0 TGTGCCAGCAGCTTAGGACAGGCCTACGAGCAGTACTTC CASSLGQAYEQYF TRBV7-8*01 TRBJ2-7*01 19.0 1088.0 CILPLAGGTSYGKLTF_CASSLGQAYEQYF 308 3517 EBNA3A-193-201 EBV 0.71 1022 EBNA3A-193-201 146 3371 12 EBV EBNA3A FLRGRAYGL effector T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-B*08:01 B2M MHCI -12839 chip0516_796653 5.93 13.43 Chip4 healthy_8 healthy TGCGCCAGCAGCCAAGATGGGGTGCCAGGGGGCAACGAGCAGTACTTC CASSQDGVPGGNEQYF TRBV4-1*01 TRBJ2-7*01 10.0 579.0 _CASSQDGVPGGNEQYF 3 6558 NP44-52 FLU 0.83 474 NP44-52 149 6409 7 InfluenzaA NP CTELKLSDY transitional T cells between effector and memory populations PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*01:01 B2M MHCI -12840 chip0516_108103 -0.87 10.48 Chip4 healthy_7 healthy TGTGCCGTTGACCTTTCTGGGGGTTACCAGAAAGTTACCTTT CAVDLSGGYQKVTF TRAV12-2*01 TRAJ13*01 1.0 16.0 TGTGCCAGCAGTTACTCGCTGGACGGCGGTCAGCCCCAGCATTTT CASSYSLDGGQPQHF TRBV6-5*01 TRBJ1-5*01 21.0 833.0 CAVDLSGGYQKVTF_CASSYSLDGGQPQHF 1 5562 MART1-A28L MART1 0.66 84 MART1-A28L 160 5402 3 HomoSapiens MART1 ALGIGILTV Naive T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*02:01 B2M MHCI -12841 chip0516_48431 11.51 7.35 Chip4 healthy_8 healthy TGCATCCTGCCCCTTGCTGGTGGTACTAGCTATGGAAAGCTGACATTT CILPLAGGTSYGKLTF TRAV26-2*01 TRAJ52*01 55.0 3359.0 CILPLAGGTSYGKLTF_ 55 5181 EBNA3A-193-201 EBV 0.64 1022 EBNA3A-193-201 157 5024 10 EBV EBNA3A FLRGRAYGL effector memory T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-B*08:01 B2M MHCI -12842 chip0516_729134 6.63 12.18 Chip4 healthy_10 healthy TGCATCCTTCCCCTCGCTGGTGGTACTAGCTATGGAAAGCTGACATTT CILPLAGGTSYGKLTF TRAV26-2*01 TRAJ52*01 20.0 1400.0 TGTGCCAGCAGCTTGGGACAGGCTTACGAGCAGTACTTC CASSLGQAYEQYF TRBV7-8*01 TRBJ2-7*01 24.0 1208.0 CILPLAGGTSYGKLTF_CASSLGQAYEQYF 308 4207 EBNA3A-193-201 EBV 0.9 1022 EBNA3A-193-201 148 4059 7 EBV EBNA3A FLRGRAYGL transitional T cells between effector and memory populations PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-B*08:01 B2M MHCI -12843 chip0516_728691 11.79 8.11 Chip4 healthy_8 healthy TGTGCCAGCAGCTTAGGACAGGCCTACGAGCAGTACTTC CASSLGQAYEQYF TRBV7-8*01 TRBJ2-7*01 1.0 22.0 _CASSLGQAYEQYF 175 4855 EBNA3A-193-201 EBV 0.92 1022 EBNA3A-193-201 160 4695 10 EBV EBNA3A FLRGRAYGL effector memory T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-B*08:01 B2M MHCI -12844 chip0516_779768 7.94 9.3 Chip4 tet_neg TGCATCCTGCCCCTTGCTGGTGGTACTAGCTATGGAAAGCTGACATTT CILPLAGGTSYGKLTF TRAV26-2*01 TRAJ52*01 24.0 1319.0 CILPLAGGTSYGKLTF_ 55 11124 EBNA3A-193-201 EBV 0.92 1022 EBNA3A-193-201 170 10954 8 EBV EBNA3A FLRGRAYGL effector memory T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-B*08:01 B2M MHCI -12845 chip0516_156857 6.01 13.77 Chip4 healthy_8 healthy TGTGCTTTTAGATCTTATAACACCGACAAGCTCATCTTT CAFRSYNTDKLIF TRAV20*01 TRAJ34*01 1.0 73.0 CAFRSYNTDKLIF_ 2 5023 NP30-38 FLU 0.76 72 NP30-38 148 4875 7 InfluenzaA NP RPIIRPATL transitional T cells between effector and memory populations PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-B*08:01 B2M MHCI -12846 chip0516_593503 10.57 6.53 Chip4 healthy_6 healthy _ 6746 10046 EBV-LMP2-FLY EBV 0.92 355 EBV-LMP2-FLY 151 9895 10 EBV LMP2 FLYALALLL effector memory T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*02:01 B2M MHCI -12847 chip0516_47357 5.78 12.01 Chip4 healthy_6 healthy TGCGCCAGCAGCCGATGGACAGGGGATAATGAAGCTTTCTTT CASSRWTGDNEAFF TRBV5-1*01 TRBJ1-1*01 31.0 1900.0 _CASSRWTGDNEAFF 1 8001 IGRP-152-160-MLI IGRP 0.62 6 NEG 148 7853 7 HomoSapiens IGRP FLWSVFMLI transitional T cells between effector and memory populations PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*02:01 B2M MHCI -12848 chip0516_832089 11.65 8.04 Chip4 healthy_8 healthy TGCATCCTGCCCCTTGCTGGTGGTACTAGCTATGGAAAGCTGACATTT CILPLAGGTSYGKLTF TRAV26-2*01 TRAJ52*01 79.0 4739.0 TGTGCCAGCAGCTCCGGACAGGCCTACGAGCAGTACTTC CASSSGQAYEQYF TRBV7-8*01 TRBJ2-7*01 39.0 2334.0 CILPLAGGTSYGKLTF_CASSSGQAYEQYF 40 5117 EBNA3A-193-201 EBV 0.84 1022 EBNA3A-193-201 159 4958 10 EBV EBNA3A FLRGRAYGL effector memory T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-B*08:01 B2M MHCI -12849 chip0516_46517 11.01 7.03 Chip4 healthy_7 healthy TGTGCCAGCAGCCAGGGGACGGAAAAACTGTTTTTT CASSQGTEKLFF TRBV9*01 TRBJ1-4*01 7.0 393.0 _CASSQGTEKLFF 1 4981 MART1-A28L MART1 0.83 84 MART1-A28L 171 4810 10 HomoSapiens MART1 ALGIGILTV effector memory T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*02:01 B2M MHCI -12850 chip0516_831 5.43 9.83 Chip4 healthy_8 healthy TGCATCCTGCCCCTTGCTGGTGGTACTAGCTATGGAAAGCTGACATTT CILPLAGGTSYGKLTF TRAV26-2*01 TRAJ52*01 19.0 1389.0 TGTGCCAGCAGCTTAGGACAGGCCTACGAGCAGTACTTC CASSLGQAYEQYF TRBV7-8*01 TRBJ2-7*01 1.0 28.0 CILPLAGGTSYGKLTF_CASSLGQAYEQYF 308 4827 EBNA3A-193-201 EBV 0.89 1022 EBNA3A-193-201 137 4690 6 EBV EBNA3A FLRGRAYGL central memory T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-B*08:01 B2M MHCI -12851 chip0516_363133 -3.23 8.91 Chip4 healthy_9 healthy TGTGCCAGCAGTGGATTAATCGTGGGAGGAAACACCATATATTTT CASSGLIVGGNTIYF TRBV2*01 TRBJ1-3*01 37.0 2219.0 _CASSGLIVGGNTIYF 1 6232 INS-GSH-9 INS 0.5 19 NEG 135 6097 2 HomoSapiens INS GSHLVEALY Naive T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*01:01 B2M MHCI -12852 chip0516_31025 6.35 11.57 Chip4 healthy_8 healthy TGTGCTGTGACCCTTACCCTCTCCTCTGGGGCTGGGCGTTCCCCCCTCACTTTC CAVTLTLSSGAGRSPLTF TRAV21*01 TRAJ28*01 11.0 638.0 TGTGCCAGCAGTTTAATGGGGACAGGGGGCTTGAGTGAAAAACTGTTTTTT CASSLMGTGGLSEKLFF TRBV28*01 TRBJ1-4*01 24.0 634.0 CAVTLTLSSGAGRSPLTF_CASSLMGTGGLSEKLFF 1 7463 EBNA3A-158-166 EBV 0.86 444 EBNA3A-158-166 147 7316 7 EBV EBNA3A QAKWRLQTL transitional T cells between effector and memory populations PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-B*08:01 B2M MHCI -12853 chip0516_649240 15.46 9.67 Chip4 healthy_9 healthy TGTGCTGTGAGTGATCGGGAGGGAGCCCAGAAGCTGGTATTT CAVSDREGAQKLVF TRAV8-4*01 TRAJ54*01 1.0 84.0 TGTGCCAGCAGCCTCGTCTTACTGGGTAACACTGAAGCTTTCTTT CASSLVLLGNTEAFF TRBV7-3*01 TRBJ1-1*01 20.0 1029.0 CAVSDREGAQKLVF_CASSLVLLGNTEAFF 1 4657 BZLF1-190-197 EBV 0.77 2156 BZLF1-190-197 159 4498 12 EBV BZLF1 RAKFKQLL effector T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-B*08:01 B2M MHCI -12854 chip0516_573884 -0.52 8.63 Chip4 healthy_9 healthy TGTGCTGTGAGGGACACGGGCAGGAGAGCACTTACTTTT CAVRDTGRRALTF TRAV3*01 TRAJ5*01 9.0 576.0 TGTGCCAGCAGCGTCCCCCTAGCGAGAGGGCCCGATGAGCAGTTCTTC CASSVPLARGPDEQFF TRBV9*01 TRBJ2-1*01 20.0 888.0 CAVRDTGRRALTF_CASSVPLARGPDEQFF 1 5644 Nef90-97 HIV 0.94 8 Nef90-97 158 5486 4 HIV-1 Nef FLKEKGGL Naive T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-B*08:01 B2M MHCI -12855 chip0516_492420 -1.47 9.95 Chip4 healthy_8 healthy TGTGCTTATACAACAGGAGGAGGTGCTGACGGACTCACCTTT CAYTTGGGADGLTF TRAV38-1*01 TRAJ45*01 8.0 433.0 TGCAGCGTTGGCAGGCGGCTCGAAGCTTTCTTT CSVGRRLEAFF TRBV29-1*01 TRBJ1-1*01 78.0 7605.0 CAYTTGGGADGLTF_CSVGRRLEAFF 1 7710 IAPP-ILK-8 IAPP 0.54 20 NEG 150 7560 3 HomoSapiens IAPP ILKLQVFL Naive T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-B*08:01 B2M MHCI -12856 chip0516_108491 -1.25 10.25 Chip4 healthy_7 healthy TGTGCCAGCAGCTCCCTTTATGGGGGAAAAGAGACCCAGTACTTC CASSSLYGGKETQYF TRBV7-9*01 TRBJ2-5*01 103.0 6286.0 _CASSSLYGGKETQYF 1 5632 GP160-311-320 HIV 0.91 109 NEG 130 5502 3 HIV-1 GP160 RGPGRAFVTI Naive T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*02:01 B2M MHCI -12857 chip0516_359111 12.26 6.57 Chip4 healthy_6 healthy TGTGCCAGTAGGGGACTAGTGGGGAGCGCCGGGGAGCTGTTTTTT CASRGLVGSAGELFF TRBV19*01 TRBJ2-2*01 56.0 4342.0 _CASRGLVGSAGELFF 5 5904 EBV-BRLF1 EBV 0.77 1264 NEG 199 5705 10 EBV BRLF1 YVLDHLIVV effector memory T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*02:01 B2M MHCI -12858 chip0516_585250 -0.59 9.92 Chip4 healthy_7 healthy TGTGCGACCACCGCCCGGGACAGGGGGCTCGAAGAGCAGTACTTC CATTARDRGLEEQYF TRBV6-1*01 TRBJ2-7*01 2.0 32.0 _CATTARDRGLEEQYF 1 5847 PGT-178 PGT 0.64 1480 PGT-178 178 5669 3 HomoSapiens PGT LLAGIGTVPI Naive T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*02:01 B2M MHCI -12859 chip0516_821725 11.14 8.34 Chip4 healthy_8 healthy TGTGCCAGCAGCTTAGGACAGGCCTACGAGCAGTACTTC CASSLGQAYEQYF TRBV7-8*01 TRBJ2-7*01 3.0 126.0 _CASSLGQAYEQYF 175 6496 EBNA3A-193-201 EBV 0.88 1022 EBNA3A-193-201 160 6336 10 EBV EBNA3A FLRGRAYGL effector memory T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-B*08:01 B2M MHCI -12860 chip0516_785531 -0.47 8.91 Chip4 healthy_9 healthy TGCATCGTCAGACCCCGCGAGTAGCAACTATAAACTGACATTT CIVRPRE??tSNYKLTF TRAV26-1*01 TRAJ53*01 16.0 881.0 TGCGCCAGCAGCTTGGGGCAGGGGGACACTGAAGCTTTCTTT CASSLGQGDTEAFF TRBV5-1*01 TRBJ1-1*01 28.0 1737.0 CIVRPRE??tSNYKLTF_CASSLGQGDTEAFF 1 5529 GAD2-MMI-8 GAD65 0.51 40 GAD2-MMI-8 129 5400 4 HomoSapiens GAD2 MMIARFKM Naive T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-B*08:01 B2M MHCI -12861 chip0516_181371 11.31 9.43 Chip4 healthy_8 healthy TGCATCCTGCCCCTTGCTGGTGGTACTAGCTATGGAAAGCTGACATTT CILPLAGGTSYGKLTF TRAV26-2*01 TRAJ52*01 73.0 4100.0 TGTGCCAGCAGCTTAGGACAGGCCTACGAGCAGTACTTC CASSLGQAYEQYF TRBV7-8*01 TRBJ2-7*01 52.0 2470.0 CILPLAGGTSYGKLTF_CASSLGQAYEQYF 308 6729 EBNA3A-193-201 EBV 0.8 1022 EBNA3A-193-201 179 6550 9 EBV EBNA3A FLRGRAYGL effector memory T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-B*08:01 B2M MHCI -12862 chip0516_592387 10.11 10.03 Chip4 healthy_6 healthy TGTGCTGTGGCCCTCTCAAGCAAATCAACCTTT CAVALSSKSTF TRAV8-3*01 TRAJ27*01 5.0 358.0 CAVALSSKSTF_ 58 6600 EBV-LMP2A EBV 0.97 700 EBV-LMP2A 141 6459 9 EBV LMP2A CLGGLLTMV effector memory T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*02:01 B2M MHCI -12863 chip0516_577062 -1.88 7.28 Chip4 healthy_9 healthy TGCGCCAGCAGCGCTGGGACGCTCTCCTACGAGCAGTACTTC CASSAGTLSYEQYF TRBV5-1*01 TRBJ2-7*01 15.0 1601.0 _CASSAGTLSYEQYF 1 5975 EBNA3A-158-166 EBV 0.63 444 EBNA3A-158-166 142 5833 3 EBV EBNA3A QAKWRLQTL Naive T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-B*08:01 B2M MHCI -12864 chip0516_188590 10.65 11.51 Chip4 healthy_6 healthy TGTGCTGTTCTAATGGATAGCAACTATCAGTTAATCTGG CAVLMDSNYQLIW TRAV21*01 TRAJ33*01 23.0 1483.0 CAVLMDSNYQLIW_ 20 5455 EBV-LMP2A EBV 1.0 700 NEG 164 5291 9 EBV LMP2A CLGGLLTMV effector memory T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*02:01 B2M MHCI -12865 chip0516_847399 9.92 8.79 Chip4 healthy_6 healthy TGTGCTGTGGCCCTCTCAAGCAAATCAACCTTT CAVALSSKSTF TRAV8-3*01 TRAJ27*01 2.0 100.0 CAVALSSKSTF_ 58 5954 EBV-LMP2A EBV 0.83 700 EBV-LMP2A 148 5806 8 EBV LMP2A CLGGLLTMV effector memory T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*02:01 B2M MHCI -12866 chip0516_524670 11.31 6.84 Chip4 healthy_6 healthy TGTGCTGTGGCCCTCTCAAGCAAATCAACCTTT CAVALSSKSTF TRAV8-3*01 TRAJ27*01 5.0 416.0 TGCGCCAGCAGCGGGGACGGAATGAACACTGAAGCTTTCTTT CASSGDGMNTEAFF TRBV10-2*01 TRBJ1-1*01 16.0 1273.0 CAVALSSKSTF_CASSGDGMNTEAFF 50 7016 EBV-LMP2A EBV 0.95 700 EBV-LMP2A 136 6880 10 EBV LMP2A CLGGLLTMV effector memory T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*02:01 B2M MHCI -12867 chip0516_799754 5.71 12.24 Chip4 healthy_8 healthy TGTGCCGTGGAATTGAATTATGGAGGAAGCCAAGGAAATCTCATCTTT CAVELNYGGSQGNLIF TRAV39*01 TRAJ42*01 49.0 1940.0 TGCGCCAGCAGCCAAGATGGGGTGCCAGGGGGCAACGAGCAGTACTTC CASSQDGVPGGNEQYF TRBV4-1*01 TRBJ2-7*01 23.0 1837.0 CAVELNYGGSQGNLIF_CASSQDGVPGGNEQYF 1 6054 NP44-52 FLU 0.81 474 NP44-52 132 5922 7 InfluenzaA NP CTELKLSDY transitional T cells between effector and memory populations PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*01:01 B2M MHCI -12868 chip0516_572457 11.92 6.86 Chip4 healthy_6 healthy TGTGCTGTGACCCTCTCAAGCAAATCAACCTTT CAVTLSSKSTF TRAV8-3*01 TRAJ27*01 3.0 526.0 TGCGCCAGCAGCGGGGACGGAATGAACACTGAAGCTTTCTTT CASSGDGMNTEAFF TRBV10-2*01 TRBJ1-1*01 11.0 502.0 CAVTLSSKSTF_CASSGDGMNTEAFF 1 6114 EBV-LMP2A EBV 0.89 700 EBV-LMP2A 150 5964 10 EBV LMP2A CLGGLLTMV effector memory T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*02:01 B2M MHCI -12869 chip0516_128715 10.2 10.25 Chip4 healthy_6 healthy TGTGCTGTGGCCCTCTCAAGCAAATCAACCTTT CAVALSSKSTF TRAV8-3*01 TRAJ27*01 2.0 26.0 TGCGCCAGCAGCGGGGACGGAATGAACACTGAAGCTTTCTTG CASSGDGMNTEAFL TRBV10-2*01 TRBJ1-1*01 18.0 1656.0 CAVALSSKSTF_CASSGDGMNTEAFL 1 5339 EBV-LMP2A EBV 1.0 700 EBV-LMP2A 147 5192 9 EBV LMP2A CLGGLLTMV effector memory T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*02:01 B2M MHCI -12870 chip0516_599875 5.81 12.14 Chip4 healthy_7 healthy _ 6746 4432 PGT-178 PGT 1.0 1480 PGT-178 145 4287 7 HomoSapiens PGT LLAGIGTVPI transitional T cells between effector and memory populations PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*02:01 B2M MHCI -12871 chip0516_182713 5.75 12.82 Chip4 healthy_7 healthy _ 6746 6108 M1 FLU 0.94 1250 M1 127 5981 7 InfluenzaA M1 GILGFVFTL transitional T cells between effector and memory populations PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*02:01 B2M MHCI -12872 chip0516_497889 15.96 10.28 Chip4 healthy_6 healthy _ 6746 3283 EBV-BLMF1 EBV 0.88 2531 NEG 156 3127 12 EBV BLMF1 GLCTLVAML effector T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*02:01 B2M MHCI -12873 chip0516_408822 9.82 9.55 Chip4 healthy_6 healthy TGTGCTGTTCTAATGGATAGCAACTATCAGTTAATCTGG CAVLMDSNYQLIW TRAV12-3*01 TRAJ33*01 11.0 1144.0 CAVLMDSNYQLIW_ 20 6508 EBV-LMP2A EBV 0.82 700 EBV-LMP2A 149 6359 9 EBV LMP2A CLGGLLTMV effector memory T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*02:01 B2M MHCI -12874 chip0516_873782 13.38 6.56 Chip4 healthy_6 healthy TGTGCTACCGTCGGGCTTCCGGGTTCCGCACCCTCACCTTT CATVGLcc?GFRTLTF TRAV17*01 TRAJ11*01 6.0 262.0 CATVGLcc?GFRTLTF_ 1 4472 EBV-LMP2-FLY EBV 0.92 355 NEG 152 4320 10 EBV LMP2 FLYALALLL effector memory T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*02:01 B2M MHCI -12875 chip0516_77094 -1.7 7.07 Chip4 healthy_6 healthy TGTGCCGCCTCAATAGGCTTT CAASIGF TRAV12-2*01 TRAJ11*01 8.0 1398.0 CAASIGF_ 1 7018 MART1-ALA MART1 0.69 269 MART1-ALA 128 6890 3 HomoSapiens MART1 ALAGIGILTV Naive T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*02:01 B2M MHCI -12876 chip0516_585482 -2.7 8.31 Chip4 healthy_8 healthy TGTGCCAGTAGTACAGGGGCAAGGGGCTACACCTTC CASSTGARGYTF TRBV19*01 TRBJ1-2*01 27.0 2030.0 _CASSTGARGYTF 1 9594 GFAP-HLK-8 GFAP 0.52 28 GFAP-HLK-8 145 9449 2 HomoSapiens GFAP HLKRNIVV Naive T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-B*08:01 B2M MHCI -12877 chip0516_253037 8.47 11.44 Chip4 healthy_8 healthy TGCATCGTCAGAGTCGGCGGGGCCAGCTGGGGGAAATTGCAGTTT CIVRVGGASWGKLQF TRAV26-1*01 TRAJ24*01 35.0 2265.0 CIVRVGGASWGKLQF_ 1 5205 BZLF1-190-197 EBV 0.85 2156 BZLF1-190-197 142 5063 7 EBV BZLF1 RAKFKQLL transitional T cells between effector and memory populations PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-B*08:01 B2M MHCI -12878 chip0516_589366 8.87 11.18 Chip4 healthy_8 healthy TGTGCTGTGACCCTTACCCTCTACTCTGGGGCTGGGAGTTACCAACTCACTTTC CAVTLTLYSGAGSYQLTF TRAV21*01 TRAJ28*01 22.0 1321.0 TGTGCCAGCAGTTTAATGGGGACAGGGGGCTTGAGTGAAAAACTGTTTTTT CASSLMGTGGLSEKLFF TRBV28*01 TRBJ1-4*01 27.0 1441.0 CAVTLTLYSGAGSYQLTF_CASSLMGTGGLSEKLFF 19 7567 EBNA3A-158-166 EBV 0.69 444 EBNA3A-158-166 138 7429 9 EBV EBNA3A QAKWRLQTL effector memory T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-B*08:01 B2M MHCI -12879 chip0516_828452 9.92 10.0 Chip4 healthy_6 healthy _ 6746 6065 EBV-LMP2A EBV 0.82 700 EBV-LMP2A 140 5925 9 EBV LMP2A CLGGLLTMV effector memory T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*02:01 B2M MHCI -12880 chip0516_389689 5.95 11.86 Chip4 healthy_7 healthy TGTGCCAGCAGCCACCCCGGGAACACTGAAGCTTTCTTT CASSHPGNTEAFF TRBV3-1*01 TRBJ1-1*01 38.0 2573.0 _CASSHPGNTEAFF 1 5328 GP160-311-320 HIV 0.62 109 NEG 150 5178 7 HIV-1 GP160 RGPGRAFVTI transitional T cells between effector and memory populations PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*02:01 B2M MHCI -12881 chip0516_536865 11.67 7.22 Chip4 healthy_8 healthy TGCATCCTGCCCCTTGCTGGTGGTACTAGCTATGGAAAGCTGACATTT CILPLAGGTSYGKLTF TRAV26-2*01 TRAJ52*01 26.0 1521.0 TGTGCCAGCAGCTTAGGACAGGCCTACGAGCAGTACTTC CASSLGQAYEQYF TRBV7-8*01 TRBJ2-7*01 15.0 1254.0 CILPLAGGTSYGKLTF_CASSLGQAYEQYF 308 6450 EBNA3A-193-201 EBV 0.91 1022 EBNA3A-193-201 170 6280 10 EBV EBNA3A FLRGRAYGL effector memory T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-B*08:01 B2M MHCI -12882 chip0516_688141 -3.59 9.78 Chip4 healthy_7 healthy _ 6746 5918 PGT-178 PGT 0.69 1480 PGT-178 151 5767 2 HomoSapiens PGT LLAGIGTVPI Naive T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*02:01 B2M MHCI -12883 chip0516_665650 -2.53 9.96 Chip4 healthy_8 healthy TGTGCAGATTCTTATGGAGGAAGCCAAGGAAATCTCATCTTT CADSYGGSQGNLIF TRAV25*01 TRAJ42*01 46.0 2578.0 CADSYGGSQGNLIF_ 1 5700 BZLF1-190-197 EBV 0.9 2156 BZLF1-190-197 126 5574 3 EBV BZLF1 RAKFKQLL Naive T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-B*08:01 B2M MHCI -12884 chip0516_678757 4.92 11.32 Chip4 healthy_6 healthy TGTGTGGTGAACGGGGACTCTGGGGCTGGGAGTTACCAACTCCCTTTC CVVNGDSGAGSYQLPF TRAV12-1*01 TRAJ28*01 80.0 2510.0 TGTGCCAGCAGTCTTCAGACTAGCGGGAGTAGGGACAATGAGCAGTTCTTC CASSLQTSGSRDNEQFF TRBV6-2*01,TRBV6-3*01 TRBJ2-1*01 16.0 1065.0 CVVNGDSGAGSYQLPF_CASSLQTSGSRDNEQFF 1 4841 EBV-LMP2A EBV 0.91 700 NEG 139 4702 6 EBV LMP2A CLGGLLTMV central memory T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*02:01 B2M MHCI -12885 chip0516_256995 7.04 9.9 Chip4 healthy_9 healthy TGTGCAGCAAGCCCTCCCAAGCTCATCTTT CAASPPKLIF TRAV29/DV5*01 TRAJ34*01 1.0 89.0 TGTGCCAGCAGCTCCTTGGTCGACAATGAGCAGTTCTTC CASSSLVDNEQFF TRBV7-3*01 TRBJ2-1*01 29.0 1637.0 CAASPPKLIF_CASSSLVDNEQFF 2 4923 BZLF1-190-197 EBV 0.89 2156 BZLF1-190-197 138 4785 8 EBV BZLF1 RAKFKQLL effector memory T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-B*08:01 B2M MHCI -12886 chip0516_203126 5.59 10.17 Chip4 healthy_8 healthy TGCATCCTGCCCCTTGCTGGTGGTACTAGCTATGGAAAGCTGACATTT CILPLAGGTSYGKLTF TRAV26-2*01 TRAJ52*01 2.0 29.0 TGTGCCAGCAGCTTAGGACAGGCCTACGAGCAGTACTTC CASSLGQAYEQYF TRBV7-8*01 TRBJ2-7*01 2.0 101.0 CILPLAGGTSYGKLTF_CASSLGQAYEQYF 308 8066 EBNA3A-193-201 EBV 0.85 1022 EBNA3A-193-201 153 7913 6 EBV EBNA3A FLRGRAYGL central memory T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-B*08:01 B2M MHCI -12887 chip0516_177031 -3.16 8.88 Chip4 healthy_8 healthy TGTGCTACGGACGAAGGTAGCAGCTATAAATTGATCTTC CATDEGSSYKLIF TRAV17*01 TRAJ12*01 33.0 2083.0 TGTGCCAGCAGCCCTCCCCTCGGAGGCGGCTACACCTTC CASSPPLGGGYTF TRBV7-9*01 TRBJ1-2*01 16.0 959.0 CATDEGSSYKLIF_CASSPPLGGGYTF 1 7308 GFAP-HLK-8 GFAP 0.73 28 NEG 136 7172 2 HomoSapiens GFAP HLKRNIVV Naive T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-B*08:01 B2M MHCI -12888 chip0516_729648 -1.64 7.93 Chip4 healthy_8 healthy TGTGCTGTGAGTGTGGGCACCAATGCAGGCAAATCAACCTTT CAVSVGTNAGKSTF TRAV8-4*01 TRAJ27*01 11.0 617.0 TGTGCCAGCAGCCAGACTTCTCAGCGGGGGTACAACACCGGGGAGCTGTTTTTT CASSQTSQRGYNTGELFF TRBV7-6*01 TRBJ2-2*01 42.0 2008.0 CAVSVGTNAGKSTF_CASSQTSQRGYNTGELFF 1 7335 Nef13-20 HIV 0.53 19 NEG 141 7194 3 HIV-1 Nef WPTVRERM Naive T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-B*08:01 B2M MHCI -12889 chip0516_713193 -2.97 12.75 Chip4 healthy_9 healthy TGTACCTGAGTGAGGCGCTATATACCTTGACCAAATTTTAGTTT CT*VRRYa?tTLTKF*F TRAV19*01 TRAJ21*01 26.0 2009.0 CT*VRRYa?tTLTKF*F_ 1 3683 BZLF1-190-197 EBV 0.51 2156 BZLF1-190-197 136 3547 1 EBV BZLF1 RAKFKQLL Naive T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-B*08:01 B2M MHCI -12890 chip0516_537027 -1.61 8.98 Chip4 healthy_7 healthy TGTGCAATGAGTATATCTAACTTTGGAAATGAGAAATTAACCTTT CAMSISNFGNEKLTF TRAV12-3*01 TRAJ48*01 1.0 13.0 TGTGCCAGCTCTCAAGGACTAGCGGGAGGCCGCTCCTACAATGAGCAGTTCTTC CASSQGLAGGRSYNEQFF TRBV18*01 TRBJ2-1*01 26.0 1963.0 CAMSISNFGNEKLTF_CASSQGLAGGRSYNEQFF 1 5199 PGT-178 PGT 0.79 1480 PGT-178 150 5049 4 HomoSapiens PGT LLAGIGTVPI Naive T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*02:01 B2M MHCI -12891 chip0516_711292 -2.63 9.71 Chip4 healthy_7 healthy _ 6746 6178 PGT-178 PGT 0.63 1480 PGT-178 142 6036 3 HomoSapiens PGT LLAGIGTVPI Naive T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*02:01 B2M MHCI -12892 chip0516_645622 10.68 7.75 Chip4 healthy_8 healthy TGTGCCAGCAGCTCCGGACAGGCCTACGAGCAGTACTTC CASSSGQAYEQYF TRBV7-8*01 TRBJ2-7*01 3.0 176.0 _CASSSGQAYEQYF 49 6905 EBNA3A-193-201 EBV 0.95 1022 EBNA3A-193-201 155 6750 6 EBV EBNA3A FLRGRAYGL central memory T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-B*08:01 B2M MHCI -12893 chip0516_236070 13.14 8.15 Chip4 healthy_7 healthy GGTGTGCTGAACCGGCCTAACGCCTCCGGGCTCAGCTTT GVLNRPNASGLSF TRAV12-1*01 TRAJ20*01 7.0 536.0 GVLNRPNASGLSF_ 1 3122 EBV-BLMF1 EBV 0.88 2531 NEG 168 2954 10 EBV BLMF1 GLCTLVAML effector memory T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*02:01 B2M MHCI -12894 chip0516_874650 -3.43 9.94 Chip4 healthy_8 healthy TGTGCTGTGCAGGCTGACAGCAGTGCTTCCAAGATAATCTTT CAVQADSSASKIIF TRAV20*01 TRAJ3*01 33.0 1518.0 TGCAGTCCTCGGGACCTAAACTCCTACGAGCAGTACTTC CSPRDLNSYEQYF TRBV20-1*01 TRBJ2-7*01 17.0 1044.0 CAVQADSSASKIIF_CSPRDLNSYEQYF 1 5615 NP413-421 FLU 0.65 16 NP413-421 127 5488 2 InfluenzaA NP ALKCKGFHV Naive T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-B*08:01 B2M MHCI -12895 chip0516_237472 -0.87 9.97 Chip4 healthy_7 healthy TGTGCCAGCAGCTTAGGTGGCGAGCAGTACTTC CASSLGGEQYF TRBV7-9*01 TRBJ2-7*01 68.0 6064.0 _CASSLGGEQYF 1 6985 PGT-178 PGT 0.6 1480 NEG 142 6843 3 HomoSapiens PGT LLAGIGTVPI Naive T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*02:01 B2M MHCI -12896 chip0516_173437 -1.67 7.54 Chip4 healthy_8 healthy TGTGCTGTGAATGGTGCAGGCAACATGCTCACCTTT CAVNGAGNMLTF TRAV21*01 TRAJ39*01 18.0 2037.0 CAVNGAGNMLTF_ 1 5456 ZNT8-VTD-9 ZNT8 0.53 65 ZNT8-VTD-9 133 5323 4 HomoSapiens ZNT8 VTDAAHLLI Naive T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*01:01 B2M MHCI -12897 chip0516_134639 12.52 8.28 Chip4 healthy_8 healthy TGCATCCTGCCCCTTGCTGGTGGTACTAGCTATGGAAAGCTGACATTT CILPLAGGTSYGKLTF TRAV26-2*01 TRAJ52*01 20.0 1236.0 TGTGCCAGCAGCTTAGGACAGGCCTACGAGCAGTACTTC CASSLGQAYEQYF TRBV7-8*01 TRBJ2-7*01 8.0 900.0 CILPLAGGTSYGKLTF_CASSLGQAYEQYF 308 5630 EBNA3A-193-201 EBV 0.8 1022 EBNA3A-193-201 157 5473 10 EBV EBNA3A FLRGRAYGL effector memory T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-B*08:01 B2M MHCI -12898 chip0516_815044 11.71 6.57 Chip4 healthy_8 healthy TGTGCCGTGAAGACGGACACCAATGCAGGCAAATCAACCTTT CAVKTDTNAGKSTF TRAV12-2*01 TRAJ27*01 22.0 1139.0 CAVKTDTNAGKSTF_ 20 5627 EBNA3A-193-201 EBV 0.54 1022 EBNA3A-193-201 163 5464 10 EBV EBNA3A FLRGRAYGL effector memory T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-B*08:01 B2M MHCI -12899 chip0516_830900 -0.79 8.99 Chip4 healthy_6 healthy TGTGCAATGAGTCCTTCTAACTTTGGAAATGAGAAATTAACCTTT CAMSPSNFGNEKLTF TRAV12-3*01 TRAJ48*01 34.0 1058.0 TGCGCCAGCAGTCCCGGGACGGCCGAACACCGGGGAGCTGTTTTTT CASSPGTgc??cgNTGELFF TRBV4-3*01 TRBJ2-2*01 24.0 1260.0 CAMSPSNFGNEKLTF_CASSPGTgc??cgNTGELFF 1 8011 PGT-178 PGT 0.61 1480 PGT-178 147 7864 4 HomoSapiens PGT LLAGIGTVPI Naive T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*02:01 B2M MHCI -12900 chip0516_726037 -1.32 8.64 Chip4 healthy_7 healthy TGTGTGGTGATCCAATATGGAAACAAACTGGTCTTT CVVIQYGNKLVF TRAV12-1*01 TRAJ47*01 22.0 1946.0 TGTGTGGGAGAATAATGCAGGCAACATGCTCACCTTT CVGE*C??aGNMLTF TRAV12-1*01 TRAJ39*01 17.0 2012.0 0.37 TGTGCCAGCAAAGGACTCCCTAGCACAGATACGCAGTATTTT CASKGLPSTDTQYF TRBV28*01 TRBJ2-3*01 26.0 1492.0 CVVIQYGNKLVF_CASKGLPSTDTQYF 1 6894 EBV-LMP2A EBV 0.8 700 NEG 149 6745 3 EBV LMP2A CLGGLLTMV Naive T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*02:01 B2M MHCI -12901 chip0516_387035 -1.08 9.5 Chip4 healthy_7 healthy TGCAGTGCTGATACAGGGGACGGTAATTCACCCCTCCACTTT CSADTGDGNSPLHF TRBV20-1*01 TRBJ1-6*01 21.0 1655.0 _CSADTGDGNSPLHF 1 5437 GP160-311-320 HIV 1.0 109 GP160-311-320 149 5288 3 HIV-1 GP160 RGPGRAFVTI Naive T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*02:01 B2M MHCI -12902 chip0516_73199 5.71 9.08 Chip4 healthy_6 healthy TGCGCCAGCAGCGGGGACGGAATGAACACTGAAGCTTTCTTT CASSGDGMNTEAFF TRBV10-2*01 TRBJ1-1*01 19.0 1061.0 _CASSGDGMNTEAFF 131 10054 EBV-LMP2A EBV 1.0 700 EBV-LMP2A 143 9911 6 EBV LMP2A CLGGLLTMV central memory T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*02:01 B2M MHCI -12903 chip0516_87311 -2.11 12.48 Chip4 healthy_7 healthy TGTGCATTCGGTGCATCTAACTTTGGAAATGAGAAATTAACCTTT CAFGASNFGNEKLTF TRAV12-3*01 TRAJ48*01 81.0 3365.0 TGTGCCAGCAGCTTAGTAGGAGCGGGAGGGACCCAAGAGACCCAGTACTTC CASSLVGAGGTQETQYF TRBV11-2*01 TRBJ2-5*01 1.0 20.0 CAFGASNFGNEKLTF_CASSLVGAGGTQETQYF 1 5409 PGT-178 PGT 0.55 1480 NEG 151 5258 4 HomoSapiens PGT LLAGIGTVPI Naive T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*02:01 B2M MHCI -12904 chip0516_797008 5.97 12.09 Chip4 healthy_8 healthy TGTGCCAGCAGTTTAATGGGGCCAGGGGGCTTGAGTGAAAAACTGTTTTTT CASSLMGPGGLSEKLFF TRBV28*01 TRBJ1-4*01 20.0 674.0 _CASSLMGPGGLSEKLFF 1 8848 EBNA3A-158-166 EBV 0.64 444 EBNA3A-158-166 154 8694 7 EBV EBNA3A QAKWRLQTL transitional T cells between effector and memory populations PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-B*08:01 B2M MHCI -12905 chip0516_109264 -0.16 8.64 Chip4 healthy_7 healthy TGTGCTGAAGGGTAGGATCCCAGACTCATGTTT CAEG*DPRLMF TRAV36/DV7*01 TRAJ31*01 1.0 33.0 TGTGCCAGCAGTTACACATACGAGCAGTACTTC CASSYTYEQYF TRBV6-2*01,TRBV6-3*01 TRBJ2-7*01 10.0 1012.0 CAEG*DPRLMF_CASSYTYEQYF 1 6094 MART1-27-35 MART1 0.85 7 MART1-27-35 177 5917 4 HomoSapiens MART1 AAGIGILTV Naive T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*02:01 B2M MHCI -12906 chip0516_712586 5.41 9.76 Chip4 healthy_8 healthy TGCATCCTGCCCCTTGCTGGTGGTACTAGCTATGGAAAGCTGACATTT CILPLAGGTSYGKLTF TRAV26-2*01 TRAJ52*01 107.0 5432.0 TGTGCCAGCAGCTTAGGACAGGCCTACGAGCAGTACTTC CASSLGQAYEQYF TRBV7-8*01 TRBJ2-7*01 116.0 7473.0 CILPLAGGTSYGKLTF_CASSLGQAYEQYF 308 8524 EBNA3A-193-201 EBV 0.95 1022 EBNA3A-193-201 160 8364 6 EBV EBNA3A FLRGRAYGL central memory T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-B*08:01 B2M MHCI -12907 chip0516_844857 5.18 9.69 Chip4 healthy_7 healthy TGCAGTGCGGACGGAGGGGACACTGAAGCTTTCTTT CSADGGDTEAFF TRBV20-1*01 TRBJ1-1*01 10.0 945.0 _CSADGGDTEAFF 1 4754 EBV-LMP1-1 EBV 0.9 237 NEG 159 4595 6 EBV LMP1 YLLEMLWRL central memory T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*02:01 B2M MHCI -12908 chip0516_219203 11.59 7.52 Chip4 healthy_8 healthy TGCATCCTGCCCCTTGCTGGTGGTACTAGCTATGGAAAGCTGACATTT CILPLAGGTSYGKLTF TRAV26-2*01 TRAJ52*01 2.0 65.0 TGTGCCAACAGCTTAGGACAGGCCTACGAGCAGTACTTC CANSLGQAYEQYF TRBV7-8*01 TRBJ2-7*01 14.0 977.0 CILPLAGGTSYGKLTF_CANSLGQAYEQYF 2 5835 EBNA3A-193-201 EBV 0.86 1022 EBNA3A-193-201 151 5684 10 EBV EBNA3A FLRGRAYGL effector memory T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-B*08:01 B2M MHCI -12909 chip0516_366975 -1.84 8.65 Chip4 healthy_9 healthy TGCGCCAGTAGTATTCTTAGCGGTGTGACCTACAATGAGCAGTTCTTC CASSILSGVTYNEQFF TRBV19*01 TRBJ2-1*01 14.0 540.0 _CASSILSGVTYNEQFF 1 7473 PB1-590-599 FLU 0.77 37 PB1-590-599 130 7343 3 InfluenzaA PB1 LVSDGGPNLY Naive T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*01:01 B2M MHCI -12910 chip0516_25605 11.7 7.79 Chip4 healthy_8 healthy TGTGCCAGCAGCTTAGGACAGGCCCACGAGCAGTACTTC CASSLGQAHEQYF TRBV7-8*01 TRBJ2-7*01 6.0 352.0 _CASSLGQAHEQYF 1 5071 EBNA3A-193-201 EBV 0.87 1022 EBNA3A-193-201 135 4936 10 EBV EBNA3A FLRGRAYGL effector memory T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-B*08:01 B2M MHCI -12911 chip0516_188040 9.89 9.97 Chip4 healthy_6 healthy TGCGCCAGCAACGGGGACGGAATGAACACTGAAGCTTTCTTT CASNGDGMNTEAFF TRBV10-2*01 TRBJ1-1*01 4.0 93.0 _CASNGDGMNTEAFF 1 6331 EBV-LMP2A EBV 0.93 700 EBV-LMP2A 144 6187 9 EBV LMP2A CLGGLLTMV effector memory T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*02:01 B2M MHCI -12912 chip0516_202222 5.92 11.72 Chip4 healthy_8 healthy TGCGCCAGCAGTCTCAGGGAATTTCACGAGACCCAGTACTTC CASSLREFHETQYF TRBV6-1*01 TRBJ2-5*01 39.0 2303.0 _CASSLREFHETQYF 3 6594 EBNA3A-193-201 EBV 0.9 1022 EBNA3A-193-201 138 6456 7 EBV EBNA3A FLRGRAYGL transitional T cells between effector and memory populations PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-B*08:01 B2M MHCI -12913 chip0516_89620 12.01 6.63 Chip4 healthy_8 healthy TGCATCCTGCCCCTTGCTGGTGGTACTAGCTATGGAAAGCTGACATTT CILPLAGGTSYGKLTF TRAV26-2*01 TRAJ52*01 17.0 1115.0 TGTGCCAGCAGCTTAGGACAGGCCTACGAGCAGTACTTC CASSLGQAYEQYF TRBV7-8*01 TRBJ2-7*01 50.0 3567.0 CILPLAGGTSYGKLTF_CASSLGQAYEQYF 308 6103 EBNA3A-193-201 EBV 0.72 1022 EBNA3A-193-201 133 5970 10 EBV EBNA3A FLRGRAYGL effector memory T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-B*08:01 B2M MHCI -12914 chip0516_862020 -2.52 10.46 Chip4 healthy_6 healthy TGTGCAATGGGCCGATCTAACTTTGGAAATGAGAAATTAACCTTT CAMGRSNFGNEKLTF TRAV12-3*01 TRAJ48*01 61.0 2529.0 TGTGCCAGCAGTTTAGTGGGGGGGGGCGATAATTCACCCCTCCACTTT CASSLVGGGDNSPLHF TRBV28*01 TRBJ1-6*01 17.0 973.0 CAMGRSNFGNEKLTF_CASSLVGGGDNSPLHF 1 7063 PGT-178 PGT 0.62 1480 NEG 147 6916 3 HomoSapiens PGT LLAGIGTVPI Naive T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*02:01 B2M MHCI -12915 chip0516_573971 11.28 9.59 Chip4 healthy_8 healthy TGCATCCTGCCCCTTGCTGGTGGTACTAGCTATGGAAAGCTGACATTT CILPLAGGTSYGKLTF TRAV26-2*01 TRAJ52*01 34.0 1712.0 TGTGCCAGCAGCTTAGGACAGGCCTACGAGCAGTACTTC CASSLGQAYEQYF TRBV7-8*01 TRBJ2-7*01 15.0 721.0 CILPLAGGTSYGKLTF_CASSLGQAYEQYF 308 5271 EBNA3A-193-201 EBV 0.79 1022 EBNA3A-193-201 152 5119 9 EBV EBNA3A FLRGRAYGL effector memory T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-B*08:01 B2M MHCI -12916 chip0516_272637 6.35 11.5 Chip4 healthy_8 healthy TGTGCTGTAACCCTTAACCTCTCCTCTGGGGCTGGGCGCTCCCCCCTCACTTTC CAVTLNLSSGAGRSPLTF TRAV21*01 TRAJ28*01 4.0 240.0 TGTGCCAGCAGTTTAATGGGGACAGGGGGCTTGAGTGAAAAACTGCTTTTT CASSLMGTGGLSEKLLF TRBV28*01 TRBJ1-4*01 23.0 1253.0 CAVTLNLSSGAGRSPLTF_CASSLMGTGGLSEKLLF 1 7263 EBNA3A-158-166 EBV 0.62 444 EBNA3A-158-166 134 7129 7 EBV EBNA3A QAKWRLQTL transitional T cells between effector and memory populations PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-B*08:01 B2M MHCI -12917 chip0516_455046 14.05 8.78 Chip4 healthy_6 healthy TGTGCAGAGGATGTTAACAATGACATGCGCTTT CAEDVNNDMRF TRAV5*01 TRAJ43*01 2.0 45.0 TGCAGTGTCCTCTCTGACTCCTCCTACAATGAGCAGTTCTTC CSVLSDSSYNEQFF TRBV20-1*01 TRBJ2-1*01 25.0 2065.0 CAEDVNNDMRF_CSVLSDSSYNEQFF 1 4069 EBV-BLMF1 EBV 0.85 2531 NEG 144 3925 12 EBV BLMF1 GLCTLVAML effector T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*02:01 B2M MHCI -12918 chip0516_46547 11.78 7.07 Chip4 healthy_8 healthy TGTGCCAGCAGCTTAGGACAGGCCTACGAGCAGTACTTC CASSLGQAYEQYF TRBV7-8*01 TRBJ2-7*01 14.0 1057.0 _CASSLGQAYEQYF 175 6714 EBNA3A-193-201 EBV 0.62 1022 EBNA3A-193-201 158 6556 10 EBV EBNA3A FLRGRAYGL effector memory T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-B*08:01 B2M MHCI -12919 chip0516_537903 6.29 11.92 Chip4 healthy_6 healthy _ 6746 6937 EBV-LMP2-FLY EBV 1.0 355 NEG 135 6802 7 EBV LMP2 FLYALALLL transitional T cells between effector and memory populations PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*02:01 B2M MHCI -12920 chip0516_68535 9.09 9.23 Chip4 healthy_6 healthy TGTGCTGTGGCCCTCTCAAGCAAATCAACCTTT CAVALSSKSTF TRAV8-3*01 TRAJ27*01 3.0 96.0 CAVALSSKSTF_ 58 7037 EBV-LMP2A EBV 0.9 700 EBV-LMP2A 146 6891 8 EBV LMP2A CLGGLLTMV effector memory T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*02:01 B2M MHCI -12921 chip0516_823677 -1.58 7.81 Chip4 healthy_8 healthy TGAGCAGGAAAACGCCGGGCACCTACAAATACACGTTT *AGKRRg?cTYKYTF TRAV27*01 TRAJ40*01 6.0 395.0 TGTGCCAGCAGCTTGTGGGGGTCTGGAAACACCATATATTTT CASSLWGSGNTIYF TRBV5-5*01 TRBJ1-3*01 38.0 1911.0 *AGKRRg?cTYKYTF_CASSLWGSGNTIYF 1 7890 GAD2-EAK-10 GAD65 0.88 14 GAD2-EAK-10 150 7740 3 HomoSapiens GAD2 EAKQKGFVPF Naive T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-B*08:01 B2M MHCI -12922 chip0516_114285 11.02 7.93 Chip4 healthy_6 healthy _ 6746 6818 EBV-LMP2-FLY EBV 0.93 355 NEG 146 6672 10 EBV LMP2 FLYALALLL effector memory T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*02:01 B2M MHCI -12923 chip0516_366215 7.03 10.38 Chip4 healthy_6 healthy _ 6746 7655 ZNT8-314-322 ZNT8 0.93 16 ZNT8-314-322 157 7498 7 HomoSapiens ZNT8 ILSAHVATA transitional T cells between effector and memory populations PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*02:01 B2M MHCI -12924 chip0516_243495 8.66 8.77 Chip4 healthy_6 healthy TGCGCCAGCAGCGGGGCCGGCATGAACACTGAAGCTTTCTTT CASSGAGMNTEAFF TRBV10-2*01 TRBJ1-1*01 1.0 23.0 _CASSGAGMNTEAFF 2 9380 EBV-LMP2A EBV 0.92 700 EBV-LMP2A 183 9197 8 EBV LMP2A CLGGLLTMV effector memory T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*02:01 B2M MHCI -12925 chip0516_391705 13.44 13.07 Chip4 healthy_6 healthy TGTGCTGTTCTAATGGATAGCAACCATCAGTTAATCTGG CAVLMDSNHQLIW TRAV12-3*01 TRAJ33*01 21.0 1875.0 TGCGCCAGCAGCGGGGACGGAATGAACACTGAAGCTTTCTTT CASSGDGMNTEAFF TRBV10-2*01 TRBJ1-1*01 2.0 29.0 CAVLMDSNHQLIW_CASSGDGMNTEAFF 1 2972 EBV-LMP2A EBV 1.0 700 NEG 137 2835 11 EBV LMP2A CLGGLLTMV effector T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*02:01 B2M MHCI -12926 chip0516_181674 -3.63 8.51 Chip4 healthy_9 healthy TGTGTGGTCCAACCTCTATATGCCAGACTCATGTTT CVVQPLYARLMF TRAV12-1*01 TRAJ31*01 39.0 4598.0 TGCAGTGCTAGTGGCCGGGGACAGGGTTTTAGGAATGAGCAGTTCTTC CSASGRGQGFRNEQFF TRBV20-1*01 TRBJ2-1*01 19.0 1163.0 CVVQPLYARLMF_CSASGRGQGFRNEQFF 1 5754 GAD2-FQQ-9 GAD65 0.65 10 GAD2-FQQ-9 116 5638 2 HomoSapiens GAD2 FQQDKHYDL Naive T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-B*08:01 B2M MHCI -12927 chip0516_451338 -1.28 7.93 Chip4 healthy_8 healthy TGTGCAGCAAACACCAATGCAGGCAATCAACCTTT CAANTaa?CRQSTF TRAV29/DV5*01 TRAJ27*01 19.0 2017.0 TGTGCCAGTAGTCAGGGCTCCTACAATGAGCAGTTCTTC CASSQGSYNEQFF TRBV19*01 TRBJ2-1*01 28.0 3079.0 CAANTaa?CRQSTF_CASSQGSYNEQFF 1 7434 G6PC2-LTS-10 IGRP 0.8 59 G6PC2-LTS-10 151 7283 3 HomoSapiens G6PC2 LTSLTILQLY Naive T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*01:01 B2M MHCI -12928 chip0516_412127 9.34 10.37 Chip4 healthy_8 healthy TGTGTGGTGAACAATACAGGGGAGCAGCTATAAATTGATCTTC CVVNNTG??gSSYKLIF TRAV12-1*01 TRAJ12*01 2.0 165.0 TGTGCCAGCAGTCCGGGTGGTCGAGCGGGGGACTACAATGAGCAGTTCTTC CASSPGGRAGDYNEQFF TRBV6-2*01,TRBV6-3*01 TRBJ2-1*01 31.0 2571.0 CVVNNTG??gSSYKLIF_CASSPGGRAGDYNEQFF 1 5679 BZLF1-190-197 EBV 0.92 2156 BZLF1-190-197 134 5545 9 EBV BZLF1 RAKFKQLL effector memory T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-B*08:01 B2M MHCI -12929 chip0516_173036 12.35 8.59 Chip4 healthy_8 healthy TGCATCCTGCCCCTTGCTGGTGGTACTAGCTATGGAAAGCTGACATTT CILPLAGGTSYGKLTF TRAV26-2*01 TRAJ52*01 8.0 265.0 TGTGCCAGCAGCTTAGGACAGGCCTACGAGCAGTACTTC CASSLGQAYEQYF TRBV7-8*01 TRBJ2-7*01 27.0 1710.0 CILPLAGGTSYGKLTF_CASSLGQAYEQYF 308 4733 EBNA3A-193-201 EBV 0.89 1022 EBNA3A-193-201 158 4575 10 EBV EBNA3A FLRGRAYGL effector memory T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-B*08:01 B2M MHCI -12930 chip0516_223242 -1.57 7.72 Chip4 healthy_8 healthy TGCGCCAGCTCTTACACGGGCGTATTTGAAGCTTTCTTT CASSYTGVFEAFF TRBV5-1*01 TRBJ1-1*01 21.0 1581.0 _CASSYTGVFEAFF 1 8262 GAD2-HPR-8 GAD65 0.42 9 NEG 141 8121 3 HomoSapiens GAD2 HPRYFNQL Naive T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-B*08:01 B2M MHCI -12931 chip0516_662057 11.32 6.41 Chip4 healthy_6 healthy TGTGCTGTGGCCCTCTCAAGCAAATCAACCTCT CAVALSSKSTS TRAV8-3*01 TRAJ27*01 5.0 983.0 TGCGCCAGCAGCGGGGACGGAATGAACACTGAAGCTTTCTTT CASSGDGMNTEAFF TRBV10-2*01 TRBJ1-1*01 31.0 1762.0 CAVALSSKSTS_CASSGDGMNTEAFF 1 9143 EBV-LMP2A EBV 0.97 700 EBV-LMP2A 160 8983 10 EBV LMP2A CLGGLLTMV effector memory T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*02:01 B2M MHCI -12932 chip0516_489110 14.68 9.14 Chip4 healthy_6 healthy _ 6746 4085 EBV-BLMF1 EBV 0.92 2531 NEG 159 3926 12 EBV BLMF1 GLCTLVAML effector T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*02:01 B2M MHCI -12933 chip0516_717760 6.12 12.33 Chip4 healthy_8 healthy TGTGCCAGCAGTTTAATGGGGACAGGGGGCTTGAGTGAAAAACTGTTTTTT CASSLMGTGGLSEKLFF TRBV28*01 TRBJ1-4*01 3.0 51.0 _CASSLMGTGGLSEKLFF 18 5324 EBNA3A-158-166 EBV 0.62 444 EBNA3A-158-166 146 5178 7 EBV EBNA3A QAKWRLQTL transitional T cells between effector and memory populations PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-B*08:01 B2M MHCI -12934 chip0516_754983 -2.82 9.32 Chip4 healthy_9 healthy _ 6746 6492 NP140-148 FLU 0.86 102 NP140-148 122 6370 2 InfluenzaA NP HSNLNDATY Naive T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*01:01 B2M MHCI -12935 chip0516_766748 -2.68 8.38 Chip4 healthy_8 healthy TGTGTGGTGAGCTCGGCAGGAACTGCTCTGATCTTT CVVSSAGTALIF TRAV12-1*01 TRAJ15*01 15.0 729.0 CVVSSAGTALIF_ 1 6500 GAD2-FQQ-9 GAD65 0.55 10 NEG 134 6366 2 HomoSapiens GAD2 FQQDKHYDL Naive T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-B*08:01 B2M MHCI -12936 chip0516_849991 8.0 9.15 Chip4 healthy_8 healthy TGCATCAAACCCTTATGCCCGATTGAGGACACGGGCAGGAGAGCACTTACTTTT CIKPLCPIEDTGRRALTF TRAV26-1*01 TRAJ5*01 1.0 67.0 TGTGCCAGCAGCTTCACGGGGGGCGCCTACGAGCAGTACTTC CASSFTGGAYEQYF TRBV7-6*01 TRBJ2-7*01 4.0 127.0 CIKPLCPIEDTGRRALTF_CASSFTGGAYEQYF 1 6485 PTPRN-HAR-8 PTPRN 0.76 13 PTPRN-HAR-8 153 6332 8 HomoSapiens PTPRN HARIKLKV effector memory T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-B*08:01 B2M MHCI -12937 chip0516_37940 10.18 9.9 Chip4 healthy_8 healthy TGCATCCTGCCCCTTGCTGGTGGTACTAGCTATGGAAAGCTGACATTT CILPLAGGTSYGKLTF TRAV26-2*01 TRAJ52*01 42.0 1524.0 TGTGCCAGCAGCTCCGGACAGGCCTACGAGCAGTACTTC CASSSGQAYEQYF TRBV7-8*01 TRBJ2-7*01 26.0 1565.0 CILPLAGGTSYGKLTF_CASSSGQAYEQYF 40 7852 EBNA3A-193-201 EBV 0.92 1022 EBNA3A-193-201 161 7691 9 EBV EBNA3A FLRGRAYGL effector memory T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-B*08:01 B2M MHCI -12938 chip0516_2472 13.94 10.15 Chip4 healthy_8 healthy TGCATCCTGCCCCTTGCTGGTGGTACTAGCTATGGAAAGCTGACATTT CILPLAGGTSYGKLTF TRAV26-2*01 TRAJ52*01 31.0 1632.0 TGTGCCAGCAGCTCCGGACAGGCCTACGAGCAGTACTTC CASSSGQAYEQYF TRBV7-8*01 TRBJ2-7*01 2.0 115.0 CILPLAGGTSYGKLTF_CASSSGQAYEQYF 40 4653 EBNA3A-193-201 EBV 0.91 1022 EBNA3A-193-201 141 4512 12 EBV EBNA3A FLRGRAYGL effector T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-B*08:01 B2M MHCI -12939 chip0516_424919 14.49 11.22 Chip4 healthy_8 healthy TGTGCTGTGACTGATGCTGAGGGAGCCCAGAAGCTGGTATTT CAVTDAEGAQKLVF TRAV8-6*01 TRAJ54*01 23.0 1425.0 TGTGCCAGCAGCTTATTTCTGATAGCGGCTCGGGGTCACAATGAGCAGTTCTTC CASSLFLIAARGHNEQFF TRBV11-3*01 TRBJ2-1*01 14.0 698.0 CAVTDAEGAQKLVF_CASSLFLIAARGHNEQFF 1 4120 BZLF1-190-197 EBV 0.48 2156 NEG 149 3971 12 EBV BZLF1 RAKFKQLL effector T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-B*08:01 B2M MHCI -12940 chip0516_716849 -2.77 8.48 Chip4 healthy_6 healthy TGTGCCGTTACAGGCTTTCAGAAACTTGTATTT CAVTGFQKLVF TRAV12-2*01 TRAJ8*01 6.0 622.0 TGTGCCAGCAGTCCTCCAGGACAGGGAACCTACGAGCAGTACTTC CASSPPGQGTYEQYF TRBV3-1*01 TRBJ2-7*01 30.0 1971.0 CAVTGFQKLVF_CASSPPGQGTYEQYF 1 6756 PGT-178 PGT 0.95 1480 PGT-178 143 6613 2 HomoSapiens PGT LLAGIGTVPI Naive T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*02:01 B2M MHCI -12941 chip0516_79951 15.85 10.69 Chip4 healthy_8 healthy TGTGCAGCCTGGGGTTACCAGAAAGTTACCTTT CAAWGYQKVTF TRAV13-1*01 TRAJ13*01 35.0 4197.0 CAAWGYQKVTF_ 1 4859 BZLF1-190-197 EBV 0.76 2156 BZLF1-190-197 122 4737 12 EBV BZLF1 RAKFKQLL effector T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-B*08:01 B2M MHCI -12942 chip0516_754296 -1.05 10.31 Chip4 healthy_7 healthy TGTGCTGGAGGAAGCCAAGGAAATCTCATCTTT CAGGSQGNLIF TRAV12-3*01 TRAJ42*01 7.0 110.0 CAGGSQGNLIF_ 1 5505 EBV-LMP1-2 EBV 0.62 41 NEG 136 5369 3 EBV LMP1 YLQQNWWTL Naive T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*02:01 B2M MHCI -12943 chip0516_162643 10.53 11.42 Chip4 healthy_6 healthy TGTGCCAGCAGTTTAGATATGAGCTCTTCCTACAATGAGCAGTTCTTC CASSLDMSSSYNEQFF TRBV27*01 TRBJ2-1*01 34.0 2209.0 _CASSLDMSSSYNEQFF 1 5115 EBV-BRLF1 EBV 0.95 1264 EBV-BRLF1 148 4967 9 EBV BRLF1 YVLDHLIVV effector memory T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*02:01 B2M MHCI -12944 chip0516_225634 -2.29 7.62 Chip4 healthy_7 healthy TGTGCAATGAGCGAGCGAATTATGGAGGAAGCCAAGGAAATCTCATCTTT CAMSERIMg?aGSQGNLIF TRAV12-3*01 TRAJ42*01 43.0 1949.0 TGCAGTGCCCCAGTGAGAGAGCAGTACTTC CSAPVREQYF TRBV20-1*01 TRBJ2-7*01 21.0 1768.0 CAMSERIMg?aGSQGNLIF_CSAPVREQYF 1 5193 PGT-178 PGT 0.77 1480 PGT-178 126 5067 3 HomoSapiens PGT LLAGIGTVPI Naive T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*02:01 B2M MHCI -12945 chip0516_760015 10.95 9.6 Chip4 healthy_6 healthy _ 6746 6205 EBV-LMP2A EBV 0.86 700 EBV-LMP2A 166 6039 9 EBV LMP2A CLGGLLTMV effector memory T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*02:01 B2M MHCI -12946 chip0516_642983 10.37 8.92 Chip4 healthy_6 healthy TGTGCTGTGGCCCTCTCAAGCAAATCAACCTTT CAVALSSKSTF TRAV8-3*01 TRAJ27*01 6.0 528.0 CAVALSSKSTF_ 58 6713 EBV-LMP2A EBV 0.94 700 EBV-LMP2A 146 6567 10 EBV LMP2A CLGGLLTMV effector memory T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*02:01 B2M MHCI -12947 chip0516_769777 13.77 8.26 Chip4 healthy_10 healthy TGTGCAGCAAGTGAGACCTCCTACGACAAGGTGATATTT CAASETSYDKVIF TRAV13-1*01 TRAJ50*01 18.0 1594.0 TGTGCCAGCAGCTCCACATCAGCGGGAGACAATGAGCAGTTCTTC CASSSTSAGDNEQFF TRBV7-9*01 TRBJ2-1*01 31.0 2512.0 CAASETSYDKVIF_CASSSTSAGDNEQFF 1 2316 BZLF1-190-197 EBV 0.94 2156 BZLF1-190-197 148 2168 10 EBV BZLF1 RAKFKQLL effector memory T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-B*08:01 B2M MHCI -12948 chip0516_469657 -0.58 10.1 Chip4 healthy_7 healthy TGTGCCAGCAGCGAGGGGGCAAGCACAGATACGCAGTATTTT CASSEGASTDTQYF TRBV2*01 TRBJ2-3*01 24.0 786.0 _CASSEGASTDTQYF 1 6852 PGT-178 PGT 0.54 1480 PGT-178 132 6720 3 HomoSapiens PGT LLAGIGTVPI Naive T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*02:01 B2M MHCI -12949 chip0516_503381 11.75 7.08 Chip4 healthy_8 healthy TGCATCCTGCCCCTTGCTGGTGGTACTAGCTATGGAAAGCTGACATTT CILPLAGGTSYGKLTF TRAV26-2*01 TRAJ52*01 1.0 14.0 TGTGCCAGCAGCTTAGGACAGGCCTACGAGCAGTACTTC CASSLGQAYEQYF TRBV7-8*01 TRBJ2-7*01 47.0 2688.0 CILPLAGGTSYGKLTF_CASSLGQAYEQYF 308 6623 EBNA3A-193-201 EBV 0.89 1022 EBNA3A-193-201 202 6421 10 EBV EBNA3A FLRGRAYGL effector memory T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-B*08:01 B2M MHCI -12950 chip0516_882503 -0.7 10.2 Chip4 healthy_8 healthy _ 6746 5586 ZNT8-YAY-8 ZNT8 0.9 54 ZNT8-YAY-8 137 5449 3 HomoSapiens ZNT8 YAYAKWKL Naive T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-B*08:01 B2M MHCI -12951 chip0516_725368 -3.86 10.5 Chip4 healthy_8 healthy TGCGGCACAGAGCTGAGGGAACAACAGACTCGCTTTT CGTELR??gNNRLAF TRAV30*01 TRAJ7*01 8.0 611.0 TGCAGTGCTAAAGACCGGGACGCAAACACAGATACGCAGTATTTT CSAKDRDANTDTQYF TRBV20-1*01 TRBJ2-3*01 27.0 1970.0 CGTELR??gNNRLAF_CSAKDRDANTDTQYF 1 6414 INS-MAL-8 INS 0.86 38 NEG 136 6278 2 HomoSapiens INS MALWMRLL Naive T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-B*08:01 B2M MHCI -12952 chip0516_331225 -0.56 10.18 Chip4 healthy_8 healthy TGTGCAGCAAGTATTAACTATGGTCAGAATTTTGTCTTT CAASINYGQNFVF TRAV13-1*01 TRAJ26*01 33.0 2156.0 TGCAGCTTTGGACAGCGTAACACTGAAGCTTTCTTT CSFGQRNTEAFF TRBV29-1*01 TRBJ1-1*01 235.0 16539.0 CAASINYGQNFVF_CSFGQRNTEAFF 1 8274 G6PC2-YLK-8 IGRP 0.78 27 G6PC2-YLK-8 127 8147 3 HomoSapiens G6PC2 YLKTNLFL Naive T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-B*08:01 B2M MHCI -12953 chip0516_307630 0.53 8.5 Chip4 healthy_8 healthy TGTGCTGTGAGGGGGGCGGATAGCAGCTATAAATTGATCTTC CAVRGADSSYKLIF TRAV8-6*01 TRAJ12*01 8.0 403.0 TGCGCCAGCAGCCAAGATCGCAGAGGCTATGGCTACACCTTC CASSQDRRGYGYTF TRBV4-1*01 TRBJ1-2*01 22.0 1619.0 CAVRGADSSYKLIF_CASSQDRRGYGYTF 1 9078 gp160-586-593 HIV 0.89 30 gp160-586-593 147 8931 4 HIV-1 gp160 YLKDQQLL Naive T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-B*08:01 B2M MHCI -12954 chip0516_532603 -3.89 11.87 Chip4 healthy_8 healthy TGTGCTGTGAGTGATGGGGGTTACCAGAAAGTTACCTTT CAVSDGGYQKVTF TRAV8-6*01 TRAJ13*01 42.0 3135.0 TGTGCCAGCAGCTTGGGTGCTGAAGCTTTCTTT CASSLGAEAFF TRBV7-9*01 TRBJ1-1*01 17.0 1541.0 CAVSDGGYQKVTF_CASSLGAEAFF 1 4764 ZNT8-YAK-9 ZNT8 0.94 59 ZNT8-YAK-9 136 4628 1 HomoSapiens ZNT8 YAKWKLCSA Naive T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-B*08:01 B2M MHCI -12955 chip0516_168934 11.25 8.96 Chip4 healthy_8 healthy TGTGCCAGCAGTAACCACGGAGGGGGGGAGCTGTTTTTT CASSNHGGGELFF TRBV28*01 TRBJ2-2*01 47.0 2893.0 _CASSNHGGGELFF 1 6042 EBNA3A-158-166 EBV 0.94 444 EBNA3A-158-166 134 5908 10 EBV EBNA3A QAKWRLQTL effector memory T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-B*08:01 B2M MHCI -12956 chip0516_165201 -0.88 8.27 Chip4 healthy_7 healthy _ 6746 6671 ZNT8-16-24 ZNT8 0.67 39 NEG 142 6529 4 HomoSapiens ZNT8 KMYAFTLES Naive T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*02:01 B2M MHCI -12957 chip0516_787999 5.71 12.55 Chip4 healthy_7 healthy TGTGCTGGCTGGGTCTCATGGAATATGGAAACAAACTGGTCTTT CAGWVSWa?aYGNKLVF TRAV35*01 TRAJ47*01 1.0 11.0 TGTGCCAGTAGTTCTCGAAGTTCCTACGAGCAGTACTTC CASSSRSSYEQYF TRBV19*01 TRBJ2-7*01 7.0 425.0 CAGWVSWa?aYGNKLVF_CASSSRSSYEQYF 1 7155 M1 FLU 0.94 1250 M1 121 7034 7 InfluenzaA M1 GILGFVFTL transitional T cells between effector and memory populations PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*02:01 B2M MHCI -12958 chip0516_569074 -0.82 8.87 Chip4 healthy_7 healthy TGTGCCAGCTCACCATTCTCCGGGACAGATAACTATGGCTACACCTTC CASSPFSGTDNYGYTF TRBV18*01 TRBJ1-2*01 2.0 91.0 _CASSPFSGTDNYGYTF 1 5272 GAD65-536-545 GAD65 1.0 7 GAD65-536-545 150 5122 3 HomoSapiens GAD65 RMMEYGTTMV Naive T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*02:01 B2M MHCI -12959 chip0516_449960 6.14 12.25 Chip4 healthy_8 healthy TGTGCTGTGGCCTGGTTATGCTCTGGGGCTGGGAGTTACCTGCGCACTTCA CAVAWLCSGAGSYLRTS TRAV8-3*01 TRAJ28*01 2.0 10.0 CAVAWLCSGAGSYLRTS_ 1 6895 EBNA3A-158-166 EBV 0.8 444 EBNA3A-158-166 147 6748 7 EBV EBNA3A QAKWRLQTL transitional T cells between effector and memory populations PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-B*08:01 B2M MHCI -12960 chip0516_462120 -1.22 10.47 Chip4 healthy_7 healthy _ 6746 5033 PGT-178 PGT 0.52 1480 PGT-178 123 4910 3 HomoSapiens PGT LLAGIGTVPI Naive T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*02:01 B2M MHCI -12961 chip0516_241186 8.14 9.44 Chip4 healthy_8 healthy TGTGCCGTGAAGACGGACACCAATGCAGGCAAATCAACCTTT CAVKTDTNAGKSTF TRAV12-2*01 TRAJ27*01 40.0 2364.0 CAVKTDTNAGKSTF_ 20 9103 EBNA3A-193-201 EBV 0.94 1022 EBNA3A-193-201 143 8960 8 EBV EBNA3A FLRGRAYGL effector memory T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-B*08:01 B2M MHCI -12962 chip0516_274399 11.01 11.83 Chip4 healthy_6 healthy TGCGCCAGCAGCGGGGACGGAATGAACACTGAAGCTTTCTTT CASSGDGMNTEAFF TRBV10-2*01 TRBJ1-1*01 43.0 1889.0 _CASSGDGMNTEAFF 131 3966 EBV-LMP2A EBV 1.0 700 EBV-LMP2A 140 3826 9 EBV LMP2A CLGGLLTMV effector memory T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*02:01 B2M MHCI -12963 chip0516_192035 9.21 10.29 Chip4 healthy_7 healthy TGTGCCAGCAGTTTTGAGATTTCCTACAATGAGCAGTTCTTC CASSFEISYNEQFF TRBV28*01 TRBJ2-1*01 24.0 1724.0 _CASSFEISYNEQFF 1 4869 GP160-311-320 HIV 0.59 109 NEG 124 4745 9 HIV-1 GP160 RGPGRAFVTI effector memory T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*02:01 B2M MHCI -12964 chip0516_788959 9.55 8.95 Chip4 healthy_6 healthy TGTGCCAGTAGGGGACTAGTGGGGAGCGCCGGGGAGCTGTTTTTT CASRGLVGSAGELFF TRBV19*01 TRBJ2-2*01 40.0 2278.0 _CASRGLVGSAGELFF 5 5995 EBV-BRLF1 EBV 0.96 1264 EBV-BRLF1 152 5843 8 EBV BRLF1 YVLDHLIVV effector memory T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*02:01 B2M MHCI -12965 chip0516_151882 -3.11 13.28 Chip4 healthy_7 healthy _ 6746 3420 MART1-ALA MART1 1.0 269 NEG 132 3288 1 HomoSapiens MART1 ALAGIGILTV Naive T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*02:01 B2M MHCI -12966 chip0516_35233 -1.91 9.2 Chip4 healthy_7 healthy TGTGCCGTGATGAATGCCAGACTCATGTTT CAVMNARLMF TRAV12-2*01 TRAJ31*01 1.0 114.0 TGTGCCAGCAGCTTAATCGGGACAGGGGAAACCTACGAGCAGTACTTC CASSLIGTGETYEQYF TRBV7-9*01 TRBJ2-7*01 39.0 2104.0 CAVMNARLMF_CASSLIGTGETYEQYF 1 5751 GAG-77-86 HIV 0.74 15 GAG-77-86 145 5606 2 HIV-1 GAG SLYNTVATLY Naive T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*02:01 B2M MHCI -12967 chip0516_447128 -1.47 7.16 Chip4 healthy_8 healthy TGCAGTGCTAGTTACAGGGGGTACGAAGCTTTCTTT CSASYRGYEAFF TRBV20-1*01 TRBJ1-1*01 59.0 4791.0 _CSASYRGYEAFF 1 7322 BZLF1-190-197 EBV 0.81 2156 BZLF1-190-197 159 7163 3 EBV BZLF1 RAKFKQLL Naive T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-B*08:01 B2M MHCI -12968 chip0516_364757 -2.7 8.01 Chip4 healthy_6 healthy TGTGCCAGCAGTTACACACTAGGCCGGGGGGAGATTGAGCAGTTCTTC CASSYTLGRGEIEQFF TRBV6-5*01 TRBJ2-1*01 9.0 451.0 _CASSYTLGRGEIEQFF 1 8203 MART1-ALA MART1 0.82 269 NEG 155 8048 2 HomoSapiens MART1 ALAGIGILTV Naive T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*02:01 B2M MHCI -12969 chip0516_806062 9.49 10.17 Chip4 healthy_6 healthy _ 6746 4355 EBV-BLMF1 EBV 0.83 2531 EBV-BLMF1 166 4189 8 EBV BLMF1 GLCTLVAML effector memory T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*02:01 B2M MHCI -12970 chip0516_710402 11.61 7.68 Chip4 healthy_8 healthy TGCATCCTGCCCCTTGCTGGTGGTACTAGCTATGGAAAGCTGACATTT CILPLAGGTSYGKLTF TRAV26-2*01 TRAJ52*01 22.0 1295.0 TGTGCCAGCAGCTTAGGACAGGCCTACGAGCAGTACTTC CASSLGQAYEQYF TRBV7-8*01 TRBJ2-7*01 21.0 1035.0 CILPLAGGTSYGKLTF_CASSLGQAYEQYF 308 5717 EBNA3A-193-201 EBV 0.89 1022 EBNA3A-193-201 155 5562 10 EBV EBNA3A FLRGRAYGL effector memory T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-B*08:01 B2M MHCI -12971 chip0516_7142 -1.41 8.58 Chip4 healthy_7 healthy _ 6746 6171 MART1-ALA MART1 0.81 269 NEG 146 6025 3 HomoSapiens MART1 ALAGIGILTV Naive T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*02:01 B2M MHCI -12972 chip0516_620678 14.89 9.49 Chip4 healthy_6 healthy TGCAGCGTTGGGACAGGGGGAACTAATGAAAAACTGTTTTTT CSVGTGGTNEKLFF TRBV29-1*01 TRBJ1-4*01 77.0 4721.0 _CSVGTGGTNEKLFF 638 4446 EBV-BLMF1 EBV 1.0 2531 NEG 141 4305 12 EBV BLMF1 GLCTLVAML effector T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*02:01 B2M MHCI -12973 chip0516_814955 -1.54 8.74 Chip4 healthy_8 healthy TGTGCAGCAAGCATGGGACATGCACTCAACTTC CAASMGHALNF TRAV29/DV5*01 TRAJ41*01 18.0 2024.0 TGTGCCAGCAGCTTTGGAACAGGGATGGGTTACGAGCAGTACTTC CASSFGTGMGYEQYF TRBV7-3*01 TRBJ2-7*01 41.0 1993.0 CAASMGHALNF_CASSFGTGMGYEQYF 1 9071 BZLF1-190-197 EBV 0.48 2156 NEG 129 8942 3 EBV BZLF1 RAKFKQLL Naive T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-B*08:01 B2M MHCI -12974 chip0516_177337 7.37 10.01 Chip4 healthy_8 healthy TGTGCCAGCAGTCTCAGGGAATTTCACGAGACCCAGTACTTC CASSLREFHETQYF TRBV6-1*01 TRBJ2-5*01 34.0 1911.0 _CASSLREFHETQYF 3 8871 EBNA3A-193-201 EBV 0.9 1022 EBNA3A-193-201 137 8734 8 EBV EBNA3A FLRGRAYGL effector memory T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-B*08:01 B2M MHCI -12975 chip0516_157278 8.82 13.59 Chip4 healthy_8 healthy TGTGCAGCGATCAATAATGCAGGCAACATGCTCACCTTT CAAINNAGNMLTF TRAV23/DV6*01 TRAJ39*01 14.0 1740.0 TGTGCCAGCAGTTTAGGTTCACCCCTCCACTTT CASSLGSPLHF TRBV12-3*01,TRBV12-4*01 TRBJ1-6*01 27.0 2383.0 CAAINNAGNMLTF_CASSLGSPLHF 1 3070 ZNT8-VTD-9 ZNT8 0.88 65 NEG 129 2941 6 HomoSapiens ZNT8 VTDAAHLLI central memory T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*01:01 B2M MHCI -12976 chip0516_126896 6.44 10.35 Chip4 healthy_6 healthy _ 6746 6788 EBV-BRLF1 EBV 0.94 1264 EBV-BRLF1 134 6654 6 EBV BRLF1 YVLDHLIVV central memory T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*02:01 B2M MHCI -12977 chip0516_151432 -1.72 8.63 Chip4 healthy_6 healthy TGTGCCAGCAGTACTAGCGGACCCACAGATACGCAGTATTTT CASSTSGPTDTQYF TRBV12-3*01,TRBV12-4*01 TRBJ2-3*01 12.0 758.0 _CASSTSGPTDTQYF 1 6409 IGRP-265-273 IGRP 0.83 34 IGRP-265-273 134 6275 3 HomoSapiens IGRP VLFGLGFAI Naive T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*02:01 B2M MHCI -12978 chip0516_329405 -0.4 9.19 Chip4 healthy_6 healthy TGTGCTCTGATCCCGATCTCAATCAGAGGTGCTGGCAACAACCGTAAGCTGATTTGG CALIPISIRGAGNNRKLIW TRAV9-2*01 TRAJ38*01 1.0 97.0 CALIPISIRGAGNNRKLIW_ 1 6901 HCVNS3-1073-1081 HCV 0.86 36 HCVNS3-1073-1081 145 6756 3 HCV NS3 CINGVCWTV Naive T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*02:01 B2M MHCI -12979 chip0516_215172 9.72 10.21 Chip4 healthy_8 healthy _ 6746 6178 BZLF1-190-197 EBV 0.9 2156 BZLF1-190-197 152 6026 9 EBV BZLF1 RAKFKQLL effector memory T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-B*08:01 B2M MHCI -12980 chip0516_772457 -2.12 8.55 Chip4 healthy_6 healthy TGTGCTTATAGCTTTGGAAATGAGAAATTAACCTTT CAYSFGNEKLTF TRAV38-1*01 TRAJ48*01 5.0 188.0 TGCGCCAGCAGCCAAGTCGTGAGGCAGCCCCAGCATTTT CASSQVVRQPQHF TRBV4-1*01 TRBJ1-5*01 1.0 15.0 CAYSFGNEKLTF_CASSQVVRQPQHF 1 7270 PREINS-2-10 INS 0.86 37 PREINS-2-10 135 7135 3 HomoSapiens PREINS ALWMRLLPL Naive T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*02:01 B2M MHCI -12981 chip0516_348545 -1.22 8.48 Chip4 healthy_7 healthy TGTGCCGGAGGTAGCAACTATAAACTGACATTT CAGGSNYKLTF TRAV12-1*01 TRAJ53*01 21.0 1688.0 TGTGCCAGTAGTATTTTCGGGACGGGGGGCACTGAAGCTTTCTTT CASSIFGTGGTEAFF TRBV19*01 TRBJ1-1*01 96.0 5165.0 CAGGSNYKLTF_CASSIFGTGGTEAFF 1 5470 M1 FLU 0.78 1250 NEG 133 5337 4 InfluenzaA M1 GILGFVFTL Naive T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*02:01 B2M MHCI -12982 chip0516_122936 12.87 11.71 Chip4 healthy_6 healthy TGCAGTGCTAGAGACAGGGTTGGAAATGGCTACACCTTC CSARDRVGNGYTF TRBV20-1*01 TRBJ1-2*01 40.0 2573.0 _CSARDRVGNGYTF 6 3789 EBV-BLMF1 EBV 0.95 2531 EBV-BLMF1 164 3625 9 EBV BLMF1 GLCTLVAML effector memory T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*02:01 B2M MHCI -12983 chip0516_768678 -1.77 9.97 Chip4 healthy_7 healthy _ 6746 4265 PTPRN-180-188 PTPRN 0.9 18 PTPRN-180-188 134 4131 3 HomoSapiens PTPRN LLPPLLEHL Naive T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*02:01 B2M MHCI -12984 chip0516_347429 -4.86 9.38 Chip4 healthy_7 healthy TGTGCCAGCAGCCCCGACAGGGCAACCTACGAGCAGTACTTC CASSPDRATYEQYF TRBV27*01 TRBJ2-7*01 46.0 4055.0 _CASSPDRATYEQYF 1 5242 MART1-ALA MART1 0.47 269 MART1-ALA 111 5131 2 HomoSapiens MART1 ALAGIGILTV Naive T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*02:01 B2M MHCI -12985 chip0516_681323 11.38 7.88 Chip4 healthy_6 healthy TGTGCTGTGGCCCTCTCAAGCAAATCAACCTTT CAVALSSKSTF TRAV8-3*01 TRAJ27*01 9.0 980.0 CAVALSSKSTF_ 58 7862 EBV-LMP2A EBV 0.89 700 EBV-LMP2A 148 7714 10 EBV LMP2A CLGGLLTMV effector memory T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*02:01 B2M MHCI -12986 chip0516_168081 -4.05 12.0 Chip4 healthy_8 healthy TGTGCAGAGAATGTCAACTATGGTCAGAATTTTGTCTTT CAENVNYGQNFVF TRAV13-2*01 TRAJ26*01 24.0 2048.0 TGCGCCAGCAGGGATGGGACCGGGGAACTGTTTTTT CASRDGTGELFF TRBV4-1*01 TRBJ2-2*01 11.0 968.0 CAENVNYGQNFVF_CASRDGTGELFF 1 5104 GFAP-HLK-8 GFAP 1.0 28 GFAP-HLK-8 130 4974 1 HomoSapiens GFAP HLKRNIVV Naive T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-B*08:01 B2M MHCI -12987 chip0516_481100 10.9 7.46 Chip4 healthy_8 healthy TGCATCCTGCCCCTTGCTGGTGGTACTAGCTATGGAAAGCCGACATTT CILPLAGGTSYGKPTF TRAV26-2*01 TRAJ52*01 13.0 437.0 TGTGCCAGCAGCTTAGGACAGGCCTACGAGCAGTACTTC CASSLGQAYEQYF TRBV7-8*01 TRBJ2-7*01 34.0 2340.0 CILPLAGGTSYGKPTF_CASSLGQAYEQYF 2 8684 EBNA3A-193-201 EBV 0.82 1022 EBNA3A-193-201 162 8522 10 EBV EBNA3A FLRGRAYGL effector memory T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-B*08:01 B2M MHCI -12988 chip0516_687196 13.35 13.51 Chip4 healthy_6 healthy TGTGCCAGCAGCTCCTCCGCCCTAATCAGCGATGAGCAGTTCTTC CASSSSALISDEQFF TRBV11-2*01 TRBJ2-1*01 5.0 356.0 _CASSSSALISDEQFF 6 1760 EBV-BRLF1 EBV 0.83 1264 NEG 134 1626 11 EBV BRLF1 YVLDHLIVV effector T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*02:01 B2M MHCI -12989 chip0516_112103 -2.8 8.92 Chip4 healthy_6 healthy TGTGCCAGTAGTACATCAGCCAGCGGGGTGGAAAAACTGTTTTTT CASSTSASGVEKLFF TRBV19*01 TRBJ1-4*01 19.0 989.0 _CASSTSASGVEKLFF 1 6911 PGT-178 PGT 0.93 1480 PGT-178 127 6784 2 HomoSapiens PGT LLAGIGTVPI Naive T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*02:01 B2M MHCI -12990 chip0516_134092 12.34 7.54 Chip4 healthy_8 healthy TGTGCCAGCAGCTTAGGACAGGCCTACGAGCAGTACTTC CASSLGQAYEQYF TRBV7-8*01 TRBJ2-7*01 16.0 914.0 _CASSLGQAYEQYF 175 4565 EBNA3A-193-201 EBV 0.89 1022 EBNA3A-193-201 137 4428 10 EBV EBNA3A FLRGRAYGL effector memory T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-B*08:01 B2M MHCI -12991 chip0516_685616 9.81 10.42 Chip4 healthy_6 healthy TGCGCCAGCAGCGGGGACGGAATGAACACTGAAGCTTTCTTT CASSGDGMNTEAFF TRBV10-2*01 TRBJ1-1*01 3.0 568.0 _CASSGDGMNTEAFF 131 5994 EBV-LMP2A EBV 0.98 700 EBV-LMP2A 129 5865 9 EBV LMP2A CLGGLLTMV effector memory T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*02:01 B2M MHCI -12992 chip0516_593630 16.05 11.45 Chip4 healthy_8 healthy TGCATCCTGCCCCTTGCTGGTGGTACTAGCTATGGAAAGCTGACATTT CILPLAGGTSYGKLTF TRAV26-2*01 TRAJ52*01 50.0 2682.0 TGTGCCAGCAGCTTAGGACAGGCCTACGAGCAGTACTTC CASSLGQAYEQYF TRBV7-8*01 TRBJ2-7*01 13.0 348.0 CILPLAGGTSYGKLTF_CASSLGQAYEQYF 308 3284 EBNA3A-193-201 EBV 0.82 1022 EBNA3A-193-201 141 3143 12 EBV EBNA3A FLRGRAYGL effector T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-B*08:01 B2M MHCI -12993 chip0516_532729 11.84 9.97 Chip4 healthy_6 healthy _ 6746 5107 EBV-BRLF1 EBV 0.95 1264 EBV-BRLF1 137 4970 9 EBV BRLF1 YVLDHLIVV effector memory T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*02:01 B2M MHCI -12994 chip0516_423876 14.08 12.85 Chip4 healthy_8 healthy _ 6746 2926 EBNA3A-193-201 EBV 0.88 1022 EBNA3A-193-201 128 2798 12 EBV EBNA3A FLRGRAYGL effector T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-B*08:01 B2M MHCI -12995 chip0516_300898 14.14 13.41 Chip4 healthy_8 healthy TGCATCCTGCCCCTTGCTGGTGGTACTAGCTATGGAAAGCTGACATTT CILPLAGGTSYGKLTF TRAV26-2*01 TRAJ52*01 6.0 373.0 TGTCTTCTGCGGGGCCTACAAATACATCTTT CLLRG??cYKYIF TRAV40*01 TRAJ40*01 11.0 1722.0 0.61 CILPLAGGTSYGKLTF_ 55 1685 EBNA3A-193-201 EBV 0.93 1022 EBNA3A-193-201 157 1528 12 EBV EBNA3A FLRGRAYGL effector T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-B*08:01 B2M MHCI -12996 chip0516_514650 6.53 11.39 Chip4 healthy_8 healthy TGTGCCAGTCAGGGTTTTTGGTAACACTGAAGCTTTCTTT CASQGFtg??gtNTEAFF TRBV9*01 TRBJ1-1*01 1.0 23.0 _CASQGFtg??gtNTEAFF 1 6683 NP30-38 FLU 0.73 72 NP30-38 138 6545 7 InfluenzaA NP RPIIRPATL transitional T cells between effector and memory populations PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-B*08:01 B2M MHCI -12997 chip0516_134005 10.51 11.51 Chip4 healthy_8 healthy TGTGCCAGCAGCCAAGGACGGGATCCGATCGCTGAAGCTTTCTTT CASSQGRDPIAEAFF TRBV3-1*01 TRBJ1-1*01 39.0 2488.0 _CASSQGRDPIAEAFF 1 4034 BZLF1-190-197 EBV 0.91 2156 BZLF1-190-197 134 3900 9 EBV BZLF1 RAKFKQLL effector memory T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-B*08:01 B2M MHCI -12998 chip0516_155361 8.74 8.2 Chip4 healthy_6 healthy TGTGCCAGCGGGAGCATAGTGAACACTGAAGCTTTCTTT CASGSIVNTEAFF TRBV3-1*01 TRBJ1-1*01 30.0 2145.0 _CASGSIVNTEAFF 1 6373 EBV-BRLF1 EBV 0.94 1264 EBV-BRLF1 180 6193 8 EBV BRLF1 YVLDHLIVV effector memory T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*02:01 B2M MHCI -12999 chip0516_555377 10.44 6.65 Chip4 healthy_6 healthy TGTGCTGTGGCCCTCTCAAGCAAATCAACCTTT CAVALSSKSTF TRAV8-3*01 TRAJ27*01 14.0 828.0 CAVALSSKSTF_ 58 8920 EBV-LMP2A EBV 0.94 700 EBV-LMP2A 149 8771 10 EBV LMP2A CLGGLLTMV effector memory T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*02:01 B2M MHCI -13000 chip0516_341791 -4.97 9.26 Chip4 healthy_7 healthy TGTGTGGTCGTTATATCTAACTTTGGAAATGAGAAATTAACCTTT CVVVISNFGNEKLTF TRAV12-1*01 TRAJ48*01 47.0 1948.0 TGTGCCAGCAGTGAACTATTTGGACAGACTAGCAATCAGCCCCAGCATTTT CASSELFGQTSNQPQHF TRBV2*01 TRBJ1-5*01 27.0 1124.0 CVVVISNFGNEKLTF_CASSELFGQTSNQPQHF 1 5490 PGT-178 PGT 0.89 1480 PGT-178 131 5359 2 HomoSapiens PGT LLAGIGTVPI Naive T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*02:01 B2M MHCI -13001 chip0516_203221 -2.46 7.54 Chip4 healthy_7 healthy TGTATGGAGGATAGCAACTATCAGTTAATCTGG CMEDSNYQLIW TRAV12-1*01 TRAJ33*01 30.0 3497.0 TGTGCCAGCAGTGCCCCCTCCTACAATGAGCAGTTCTTC CASSAPSYNEQFF TRBV9*01 TRBJ2-1*01 26.0 1744.0 CMEDSNYQLIW_CASSAPSYNEQFF 1 5688 GP160-814-822 HIV 0.56 7 NEG 151 5537 3 HIV-1 GP160 LLNATDIAV Naive T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*02:01 B2M MHCI -13002 chip0516_22982 14.7 12.48 Chip4 healthy_6 healthy TGTGCAGAGGACCATGCCCTCAACTTC CAEDHALNF TRAV23/DV6*01 TRAJ41*01 2.0 20.0 CAEDHALNF_ 1 2980 EBV-BLMF1 EBV 0.85 2531 EBV-BLMF1 145 2835 12 EBV BLMF1 GLCTLVAML effector T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*02:01 B2M MHCI -13003 chip0516_705418 11.16 8.0 Chip4 healthy_8 healthy TGTGCCAGCAGCTTAGGACAGGCCTACGAGCAGTACTTC CASSLGQAYEQYF TRBV7-8*01 TRBJ2-7*01 30.0 1393.0 _CASSLGQAYEQYF 175 5978 EBNA3A-193-201 EBV 0.88 1022 EBNA3A-193-201 142 5836 6 EBV EBNA3A FLRGRAYGL central memory T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-B*08:01 B2M MHCI -13004 chip0516_787165 -2.05 8.01 Chip4 healthy_8 healthy TGTGCTTATAGGAGCGCGGGTAATTCCGGGTATGCACTCAACTTC CAYRSAGNSGYALNF TRAV38-2/DV8*01 TRAJ41*01 1.0 20.0 TGTGCCAGCAGCTTAGAGTCCAACAATGAGCAGTTCTTC CASSLESNNEQFF TRBV13*01 TRBJ2-1*01 11.0 610.0 CAYRSAGNSGYALNF_CASSLESNNEQFF 1 8650 GAD2-MMI-8 GAD65 0.75 40 NEG 146 8504 2 HomoSapiens GAD2 MMIARFKM Naive T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-B*08:01 B2M MHCI -13005 chip0516_69502 -2.79 8.05 Chip4 healthy_6 healthy _ 6746 7334 PGT-178 PGT 0.66 1480 PGT-178 165 7169 2 HomoSapiens PGT LLAGIGTVPI Naive T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*02:01 B2M MHCI -13006 chip0516_89737 11.14 10.42 Chip4 healthy_8 healthy TGTGCCAGCAGCTTAGGACAGGCCTACGAGCAGTACTCC CASSLGQAYEQYS TRBV7-8*01 TRBJ2-7*01 4.0 328.0 _CASSLGQAYEQYS 3 5860 EBNA3A-193-201 EBV 0.94 1022 EBNA3A-193-201 150 5710 9 EBV EBNA3A FLRGRAYGL effector memory T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-B*08:01 B2M MHCI -13007 chip0516_409871 12.57 7.97 Chip4 healthy_6 healthy TGTGCCAGCAGTCCGTTGGGGGGGGCAGATGGCTACACCTTC CASSPLGGADGYTF TRBV6-1*01 TRBJ1-2*01 10.0 619.0 _CASSPLGGADGYTF 5 3680 EBV-LMP2-FLY EBV 1.0 355 NEG 162 3518 10 EBV LMP2 FLYALALLL effector memory T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*02:01 B2M MHCI -13008 chip0516_202891 11.77 6.94 Chip4 healthy_8 healthy TGCATCCTGCCCCTTGCTGGTGGTACTAGCTATGGAAAGCTGACATTT CILPLAGGTSYGKLTF TRAV26-2*01 TRAJ52*01 19.0 855.0 TGTGCCAGCAGCTTAGGACAGGCCTACGAGCAGTACTTC CASSLGQAYEQYF TRBV7-8*01 TRBJ2-7*01 19.0 1432.0 CILPLAGGTSYGKLTF_CASSLGQAYEQYF 308 7740 EBNA3A-193-201 EBV 0.85 1022 EBNA3A-193-201 144 7596 10 EBV EBNA3A FLRGRAYGL effector memory T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-B*08:01 B2M MHCI -13009 chip0516_254463 7.16 13.02 Chip4 healthy_8 healthy TGTGCTGTGACCCTTACCCTCTACTCTGGGGCTGGGAGTTACCAACTCACTTTC CAVTLTLYSGAGSYQLTF TRAV21*01 TRAJ28*01 28.0 819.0 TGTGCCAGCAGTTTAATGGGGACAGGGGGCTTGAGTGAAAAACTGTTTTTT CASSLMGTGGLSEKLFF TRBV28*01 TRBJ1-4*01 1.0 46.0 CAVTLTLYSGAGSYQLTF_CASSLMGTGGLSEKLFF 19 4929 EBNA3A-158-166 EBV 0.57 444 EBNA3A-158-166 110 4819 7 EBV EBNA3A QAKWRLQTL transitional T cells between effector and memory populations PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-B*08:01 B2M MHCI -13010 chip0516_53088 5.84 12.61 Chip4 healthy_7 healthy TGTGCCCGTAGTATCCGGTCGGCTTCCGCGCAGTACTTC CARSIRSASAQYF TRBV19*01 TRBJ2-7*01 2.0 380.0 _CARSIRSASAQYF 1 5803 M1 FLU 0.86 1250 M1 123 5680 7 InfluenzaA M1 GILGFVFTL transitional T cells between effector and memory populations PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*02:01 B2M MHCI -13011 chip0516_792947 11.86 7.25 Chip4 healthy_8 healthy TGCATCCTGCCCCTTGCTGGTGGTACTAGCTACGGAAAGCTGACATTT CILPLAGGTSYGKLTF TRAV26-2*01 TRAJ52*01 64.0 2887.0 TGTGCCAGCAGCTTAGGACAGGCCTACGAGCAGTACTTC CASSLGQAYEQYF TRBV7-8*01 TRBJ2-7*01 29.0 1660.0 CILPLAGGTSYGKLTF_CASSLGQAYEQYF 308 4811 EBNA3A-193-201 EBV 0.94 1022 EBNA3A-193-201 157 4654 10 EBV EBNA3A FLRGRAYGL effector memory T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-B*08:01 B2M MHCI -13012 chip0516_559325 6.25 13.33 Chip4 healthy_6 healthy TGCAGCGTTGAAATTGGGGGGTACAATGAGCAGTTCTTC CSVEIGGYNEQFF TRBV29-1*01 TRBJ2-1*01 139.0 9573.0 _CSVEIGGYNEQFF 3 4446 ROTA-VP2-1 ROTA 0.86 17 ROTA-VP2-1 143 4303 7 RotavirusA VP2 SLISGMWLL transitional T cells between effector and memory populations PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*02:01 B2M MHCI -13013 chip0516_834261 -1.68 7.92 Chip4 healthy_8 healthy TGTGCCAGCAGTTTCCAGACCATGAACACTGAAGCTTTCTTT CASSFQTMNTEAFF TRBV27*01 TRBJ1-1*01 36.0 1928.0 _CASSFQTMNTEAFF 1 8459 G6PC2-YLK-8 IGRP 0.9 27 G6PC2-YLK-8 129 8330 3 HomoSapiens G6PC2 YLKTNLFL Naive T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-B*08:01 B2M MHCI -13014 chip0516_515733 10.02 9.52 Chip4 healthy_6 healthy TGCGCCAGCAGCGGGGACGGAATGAACACTGAAGCTTTCTTT CASSGDGMNTEAFF TRBV10-2*01 TRBJ1-1*01 13.0 630.0 _CASSGDGMNTEAFF 131 7717 EBV-LMP2A EBV 0.92 700 EBV-LMP2A 146 7571 9 EBV LMP2A CLGGLLTMV effector memory T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*02:01 B2M MHCI -13015 chip0516_509546 7.97 10.96 Chip4 healthy_8 healthy TGTGCAGGAGTAGGTAGTGGAGGTAGCAACTATAAACTGACATTT CAGVGSGGSNYKLTF TRAV27*01 TRAJ53*01 3.0 23.0 TGTGCCAGCAGCTTCCAAACAGGGGAGATCACTGAAGCTTTCTTT CASSFQTGEITEAFF TRBV7-6*01 TRBJ1-1*01 11.0 388.0 CAGVGSGGSNYKLTF_CASSFQTGEITEAFF 1 7262 BZLF1-190-197 EBV 0.68 2156 BZLF1-190-197 145 7117 7 EBV BZLF1 RAKFKQLL transitional T cells between effector and memory populations PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-B*08:01 B2M MHCI -13016 chip0516_159512 8.88 9.36 Chip4 healthy_6 healthy _ 6746 7028 EBV-LMP2A EBV 0.92 700 EBV-LMP2A 134 6894 8 EBV LMP2A CLGGLLTMV effector memory T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*02:01 B2M MHCI -13017 chip0516_31933 -3.71 9.27 Chip4 healthy_7 healthy TGTGCCGTGAGGAATGACATGCGCTTT CAVRNDMRF TRAV12-2*01 TRAJ43*01 1.0 184.0 TGTGCCAGCAGCTTAAACGGACTAGATGGAACCGGGGAGCTGTTTTTT CASSLNGLDGTGELFF TRBV11-2*01 TRBJ2-2*01 4.0 51.0 CAVRNDMRF_CASSLNGLDGTGELFF 1 5566 MART1-A27L MART1 0.43 16 MART1-A27L 126 5440 2 HomoSapiens MART1 ELAGIGILTV Naive T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*02:01 B2M MHCI -13018 chip0516_437534 -3.4 11.04 Chip4 healthy_8 healthy TGTGCTGTGAGTGATCAGAAGGCCTCAGGAACCTACAAATACATCTTT CAVSDQKASGTYKYIF TRAV8-4*01 TRAJ40*01 92.0 3878.0 CAVSDQKASGTYKYIF_ 1 4539 GAD2-FQQ-9 GAD65 0.82 10 GAD2-FQQ-9 127 4412 1 HomoSapiens GAD2 FQQDKHYDL Naive T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-B*08:01 B2M MHCI -13019 chip0516_133259 6.84 11.42 Chip4 healthy_8 healthy TGTGCTGTGACCCTTACCCTCTACTCTGGGGCTGGGAGTTACCAACTCACTTTC CAVTLTLYSGAGSYQLTF TRAV21*01 TRAJ28*01 30.0 1439.0 TGTGCCAGCAGTTTAATGGGGACAGGGGGCTTGAGTGAAAAACTGTTTTTT CASSLMGTGGLSEKLFF TRBV28*01 TRBJ1-4*01 2.0 61.0 CAVTLTLYSGAGSYQLTF_CASSLMGTGGLSEKLFF 19 5362 EBNA3A-158-166 EBV 0.59 444 NEG 144 5218 7 EBV EBNA3A QAKWRLQTL transitional T cells between effector and memory populations PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-B*08:01 B2M MHCI -13020 chip0516_813735 8.91 10.61 Chip4 healthy_6 healthy TGTGCCAGCAGCTCGGGACAGGGGGACAATGAGCAGTTCTTC CASSSGQGDNEQFF TRBV11-3*01 TRBJ2-1*01 17.0 987.0 _CASSSGQGDNEQFF 12 5424 EBV-BLMF1 EBV 0.83 2531 EBV-BLMF1 136 5288 8 EBV BLMF1 GLCTLVAML effector memory T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*02:01 B2M MHCI -13021 chip0516_469709 1.11 8.56 Chip4 healthy_7 healthy TGTGCAATGAGCATATCTAACTTTGGAAATGAGAAATTAACCTTT CAMSISNFGNEKLTF TRAV12-3*01 TRAJ48*01 43.0 1977.0 CAMSISNFGNEKLTF_ 13 7692 PGT-178 PGT 0.72 1480 PGT-178 133 7559 4 HomoSapiens PGT LLAGIGTVPI Naive T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*02:01 B2M MHCI -13022 chip0516_108083 15.36 9.82 Chip4 healthy_6 healthy _ 6746 4297 EBV-BRLF1 EBV 0.91 1264 EBV-BRLF1 130 4167 12 EBV BRLF1 YVLDHLIVV effector T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*02:01 B2M MHCI -13023 chip0516_502138 5.84 12.93 Chip4 healthy_8 healthy _ 6746 6549 NP30-38 FLU 0.7 72 NP30-38 155 6394 7 InfluenzaA NP RPIIRPATL transitional T cells between effector and memory populations PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-B*08:01 B2M MHCI -13024 chip0516_884579 5.79 9.64 Chip4 healthy_6 healthy _ 6746 7118 EBV-LMP1-1 EBV 1.0 237 NEG 150 6968 6 EBV LMP1 YLLEMLWRL central memory T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*02:01 B2M MHCI -13025 chip0516_465306 -2.17 10.2 Chip4 healthy_8 healthy TGTGCAGCAGGGTCTTCTGGTGGCTACAATAAGCTGATTTTT CAAGSSGGYNKLIF TRAV13-1*01 TRAJ4*01 16.0 846.0 TGCAGCGTAGAAGGGTTCGTAACAGGGGGCTACGAGCAGTACTTC CSVEGFVTGGYEQYF TRBV29-1*01 TRBJ2-7*01 76.0 4678.0 CAAGSSGGYNKLIF_CSVEGFVTGGYEQYF 1 5861 ZNT8-YAK-9 ZNT8 0.77 59 ZNT8-YAK-9 114 5747 3 HomoSapiens ZNT8 YAKWKLCSA Naive T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-B*08:01 B2M MHCI -13026 chip0516_9145 -2.49 8.78 Chip4 healthy_8 healthy TGCGCCAGCAGCTCCCGGTGGGGCGATGAAAAACTGTTTTTT CASSSRWGDEKLFF TRBV5-1*01 TRBJ1-4*01 17.0 956.0 _CASSSRWGDEKLFF 1 7420 GFAP-LRL-8 GFAP 0.62 18 NEG 129 7291 2 HomoSapiens GFAP LRLRLDQL Naive T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-B*08:01 B2M MHCI -13027 chip0516_696009 -1.73 9.72 Chip4 healthy_7 healthy TGTGCCGTGATCTTGGACACGGGCAGGAGAGCACTTACTTTT CAVILDTGRRALTF TRAV12-2*01 TRAJ5*01 27.0 1476.0 TGTGCCAGCGGTTTGAACACTGAAGCTTTCTTT CASGLNTEAFF TRBV2*01 TRBJ1-1*01 72.0 6632.0 CAVILDTGRRALTF_CASGLNTEAFF 1 5717 ZNT8-16-24 ZNT8 1.0 39 ZNT8-16-24 129 5588 3 HomoSapiens ZNT8 KMYAFTLES Naive T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*02:01 B2M MHCI -13028 chip0516_89982 11.77 7.57 Chip4 healthy_8 healthy TGCATCCTGCCCCTTGCTGGTGGTACTAGCTATGGAAAGCTGACATTT CILPLAGGTSYGKLTF TRAV26-2*01 TRAJ52*01 45.0 2588.0 TGTGCCAGCAGCTTAGGACAGGCCTACGAGCAGTACTTC CASSLGQAYEQYF TRBV7-8*01 TRBJ2-7*01 18.0 1389.0 CILPLAGGTSYGKLTF_CASSLGQAYEQYF 308 5440 EBNA3A-193-201 EBV 0.9 1022 EBNA3A-193-201 184 5256 10 EBV EBNA3A FLRGRAYGL effector memory T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-B*08:01 B2M MHCI -13029 chip0516_585014 15.92 11.1 Chip4 healthy_8 healthy TGTGCCAGCAGCTCCGGACAGGCCTACGAGCAGTACTTC CASSSGQAYEQYF TRBV7-8*01 TRBJ2-7*01 21.0 989.0 _CASSSGQAYEQYF 49 3403 EBNA3A-193-201 EBV 0.91 1022 EBNA3A-193-201 193 3210 12 EBV EBNA3A FLRGRAYGL effector T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-B*08:01 B2M MHCI -13030 chip0516_119198 6.49 11.4 Chip4 healthy_8 healthy TGTGGAGCAGACTATGCCGGCACTGCCAGTAAACTCACCTTT CGADYAGTASKLTF TRAV34*01 TRAJ44*01 16.0 1041.0 CGADYAGTASKLTF_ 1 5064 G6PC2-YLK-8 IGRP 0.86 27 G6PC2-YLK-8 132 4932 7 HomoSapiens G6PC2 YLKTNLFL transitional T cells between effector and memory populations PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-B*08:01 B2M MHCI -13031 chip0516_607760 6.88 11.84 Chip4 healthy_6 healthy TGTGCTCTGAGTGAGGGCCCGGCATGCCAGACTCATGTTT CALSEGcc??ggHARLMF TRAV19*01 TRAJ31*01 15.0 1480.0 CALSEGcc??ggHARLMF_ 2 6261 EBV-BRLF1 EBV 1.0 1264 EBV-BRLF1 132 6129 7 EBV BRLF1 YVLDHLIVV transitional T cells between effector and memory populations PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*02:01 B2M MHCI -13032 chip0516_39690 11.6 7.89 Chip4 healthy_8 healthy TGTGCCGTGAAGACGGACACCAATGCAGGCAAATCAACCTTT CAVKTDTNAGKSTF TRAV12-2*01 TRAJ27*01 46.0 2768.0 CAVKTDTNAGKSTF_ 20 5697 EBNA3A-193-201 EBV 0.61 1022 EBNA3A-193-201 153 5544 10 EBV EBNA3A FLRGRAYGL effector memory T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-B*08:01 B2M MHCI -13033 chip0516_455466 10.73 10.25 Chip4 healthy_8 healthy TGTGCTGTGTCCGAGGGAAGCAGCGGAGACAAGCTGACTTTT CAVSEGSSGDKLTF TRAV8-6*01 TRAJ46*01 19.0 1641.0 CAVSEGSSGDKLTF_ 1 5688 BZLF1-190-197 EBV 0.54 2156 BZLF1-190-197 127 5561 9 EBV BZLF1 RAKFKQLL effector memory T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-B*08:01 B2M MHCI -13034 chip0516_22478 -0.32 9.72 Chip4 healthy_8 healthy TGTGCCCTCTATAACCAGGGAGGAAAGCTTATCTTC CALYNQGGKLIF TRAV8-3*01 TRAJ23*01 37.0 3278.0 CALYNQGGKLIF_ 1 8367 ZNT8-CPR-9 ZNT8 0.64 2 ZNT8-CPR-9 140 8227 3 HomoSapiens ZNT8 CPRERPEEL Naive T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-B*08:01 B2M MHCI -13035 chip0516_52896 -3.67 8.51 Chip4 healthy_7 healthy TGTGCCAGTACCATGTACGGGTTGGGGAACACCGGGGAGCTGTTTTTT CASTMYGLGNTGELFF TRBV19*01 TRBJ2-2*01 16.0 735.0 _CASTMYGLGNTGELFF 1 6842 PGT-178 PGT 0.57 1480 NEG 142 6700 2 HomoSapiens PGT LLAGIGTVPI Naive T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*02:01 B2M MHCI -13036 chip0516_48654 9.76 10.41 Chip4 healthy_8 healthy TGTGCCAGCAGCTTTGGGACAGGGGATAACACTGAAGCTTTCTTT CASSFGTGDNTEAFF TRBV7-6*01 TRBJ1-1*01 17.0 871.0 _CASSFGTGDNTEAFF 1 6210 BZLF1-190-197 EBV 0.89 2156 BZLF1-190-197 133 6077 9 EBV BZLF1 RAKFKQLL effector memory T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-B*08:01 B2M MHCI -13037 chip0516_468028 11.38 8.27 Chip4 healthy_8 healthy TGCATCCTGCCCCTTGCTGGTGGTACTAGCTATGGAAAGCTGACATTT CILPLAGGTSYGKLTF TRAV26-2*01 TRAJ52*01 61.0 2665.0 TGTGCCAGCAGCTTAGGACAGGCCTACGAGCAGTACTTC CASSLGQAYEQYF TRBV7-8*01 TRBJ2-7*01 16.0 1013.0 CILPLAGGTSYGKLTF_CASSLGQAYEQYF 308 4888 EBNA3A-193-201 EBV 0.85 1022 EBNA3A-193-201 146 4742 10 EBV EBNA3A FLRGRAYGL effector memory T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-B*08:01 B2M MHCI -13038 chip0516_554984 8.23 11.19 Chip4 healthy_8 healthy TGTGCCGTGAAAGGGGACACCAATGCAGGCAAATCAACCTTT CAVKGDTNAGKSTF TRAV12-2*01 TRAJ27*01 29.0 2041.0 CAVKGDTNAGKSTF_ 7 7270 EBNA3A-193-201 EBV 0.91 1022 EBNA3A-193-201 128 7142 7 EBV EBNA3A FLRGRAYGL transitional T cells between effector and memory populations PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-B*08:01 B2M MHCI -13039 chip0516_42192 -4.29 7.45 Chip4 healthy_6 healthy TGTGCAATGAGCCAATCTAACTTTGGAAATGAGAAATTAACCTTT CAMSQSNFGNEKLTF TRAV12-3*01 TRAJ48*01 38.0 2040.0 TGTGCCAGCAGCCAAGATGCGACGGAGAGGCAAGAGACCCAGTACTTC CASSQDATERQETQYF TRBV3-1*01 TRBJ2-5*01 32.0 1939.0 CAMSQSNFGNEKLTF_CASSQDATERQETQYF 1 5313 PGT-178 PGT 0.75 1480 PGT-178 123 5190 2 HomoSapiens PGT LLAGIGTVPI Naive T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*02:01 B2M MHCI -13040 chip0516_232193 5.07 10.55 Chip4 healthy_7 healthy TGCGCTGTCCCTCCCATGGATAGCAGCTATAAATTGATCTTC CAVPPMDSSYKLIF TRAV1-1*01 TRAJ12*01 14.0 1011.0 TGTGCCAGCAGAAGACTAGCGGAAGGGGGCCAAGAGCAGTTCTTC CASRRLAEGGQEQFF TRBV28*01 TRBJ2-1*01 15.0 1029.0 CAVPPMDSSYKLIF_CASRRLAEGGQEQFF 1 4654 EBV-BRLF1 EBV 1.0 1264 NEG 173 4481 6 EBV BRLF1 YVLDHLIVV central memory T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*02:01 B2M MHCI -13041 chip0516_650480 5.34 10.59 Chip4 healthy_6 healthy TGTGCCAGCAGCGTCGGGGGGATTTCACCCCTCCACTTT CASSVGGISPLHF TRBV9*01 TRBJ1-6*01 14.0 817.0 _CASSVGGISPLHF 2 8210 EBV-LMP1-1 EBV 0.98 237 EBV-LMP1-1 168 8042 6 EBV LMP1 YLLEMLWRL central memory T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*02:01 B2M MHCI -13042 chip0516_523956 -1.92 9.22 Chip4 healthy_9 healthy TGTGCCAGCAGCGGGGGGCGTGAGCAGTTCTTC CASSGGREQFF TRBV4-2*01 TRBJ2-1*01 7.0 602.0 _CASSGGREQFF 1 5896 NP380-388 FLU 0.85 60 NP380-388 131 5765 3 InfluenzaA NP ELRSRYWAI Naive T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-B*08:01 B2M MHCI -13043 chip0516_814578 11.67 7.45 Chip4 healthy_8 healthy TGCATCCTGCCCCTTGCTGGTGGTACTAGCTATGGAAAGCTGACATTT CILPLAGGTSYGKLTF TRAV26-2*01 TRAJ52*01 44.0 2641.0 TGTGCCAGCAGCTTAGGACAGGCCTACGAGCAGTACTTC CASSLGQAYEQYF TRBV7-8*01 TRBJ2-7*01 13.0 852.0 CILPLAGGTSYGKLTF_CASSLGQAYEQYF 308 5819 EBNA3A-193-201 EBV 0.73 1022 EBNA3A-193-201 144 5675 10 EBV EBNA3A FLRGRAYGL effector memory T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-B*08:01 B2M MHCI -13044 chip0516_860080 11.5 10.36 Chip4 healthy_8 healthy TGTGCTCTTCTAACACCGACAAGCTCATCTTT CALLTc?cDKLIF TRAV9-2*01 TRAJ34*01 2.0 136.0 TGTGCCAGCAGCTTCGGAGTTGGGGAAGGCACTGAAGCTTTCTTT CASSFGVGEGTEAFF TRBV7-2*01 TRBJ1-1*01 31.0 1055.0 CALLTc?cDKLIF_CASSFGVGEGTEAFF 1 4710 BZLF1-190-197 EBV 0.87 2156 BZLF1-190-197 136 4574 9 EBV BZLF1 RAKFKQLL effector memory T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-B*08:01 B2M MHCI -13045 chip0516_686868 10.06 9.81 Chip4 healthy_6 healthy TGCGCCAGCAGCGGGGACGGAATGAACACTGAAGCTTTCTTT CASSGDGMNTEAFF TRBV10-2*01 TRBJ1-1*01 1.0 23.0 _CASSGDGMNTEAFF 131 5884 EBV-LMP2A EBV 0.91 700 EBV-LMP2A 143 5741 9 EBV LMP2A CLGGLLTMV effector memory T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*02:01 B2M MHCI -13046 chip0516_33153 9.52 9.1 Chip4 healthy_8 healthy TGCATCCTGCCCCTTGCTGGTGGTACTAGCTATGGAAAGCTGACATTT CILPLAGGTSYGKLTF TRAV26-2*01 TRAJ52*01 124.0 7655.0 TGTGCCAGCAGCTTAGGACAGGCCTACGAGCAGTACTTC CASSLGQAYEQYF TRBV7-8*01 TRBJ2-7*01 21.0 1150.0 CILPLAGGTSYGKLTF_CASSLGQAYEQYF 308 7279 EBNA3A-193-201 EBV 0.89 1022 EBNA3A-193-201 140 7139 8 EBV EBNA3A FLRGRAYGL effector memory T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-B*08:01 B2M MHCI -13047 chip0516_882778 5.81 10.1 Chip4 healthy_8 healthy TGCATCCTGCCCCTTGCTGGTGGTACTAGATATGGAAAGCTGACATTT CILPLAGGTRYGKLTF TRAV26-2*01 TRAJ52*01 6.0 310.0 TGTGCCAGCAGCTTAGGACAGGCCTACGAGCAGTACTTC CASSLGQAYEQYF TRBV7-8*01 TRBJ2-7*01 9.0 567.0 CILPLAGGTRYGKLTF_CASSLGQAYEQYF 5 4364 EBNA3A-193-201 EBV 0.68 1022 EBNA3A-193-201 135 4229 6 EBV EBNA3A FLRGRAYGL central memory T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-B*08:01 B2M MHCI -13048 chip0516_300450 11.16 7.5 Chip4 healthy_8 healthy TGCATCCTGCCCCTTGCTGGTGGTACTAGCTATGGAAAGCTGACATTT CILPLAGGTSYGKLTF TRAV26-2*01 TRAJ52*01 26.0 1007.0 TGTGCCAGCAGCTTAGGACAGGCCTACGAGCAGTACTTC CASSLGQAYEQYF TRBV7-8*01 TRBJ2-7*01 36.0 1516.0 CILPLAGGTSYGKLTF_CASSLGQAYEQYF 308 6536 EBNA3A-193-201 EBV 0.84 1022 EBNA3A-193-201 186 6350 10 EBV EBNA3A FLRGRAYGL effector memory T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-B*08:01 B2M MHCI -13049 chip0516_658733 11.13 12.05 Chip4 healthy_8 healthy TGTGCCAGCAGCTTAGGACAGGCCTACGAGCAGTACTTC CASSLGQAYEQYF TRBV7-8*01 TRBJ2-7*01 15.0 1004.0 _CASSLGQAYEQYF 175 4348 EBNA3A-193-201 EBV 0.74 1022 EBNA3A-193-201 151 4197 9 EBV EBNA3A FLRGRAYGL effector memory T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-B*08:01 B2M MHCI -13050 chip0516_604332 12.47 13.42 Chip4 healthy_10 healthy TGTGCAATGAGGGTTATCAAGCAACTGACCTTT CAMRVIKQLTF TRAV14/DV4*01 TRAJ22*01 18.0 2019.0 CAMRVIKQLTF_ 1 1546 BZLF1-190-197 EBV 1.0 2156 NEG 143 1403 11 EBV BZLF1 RAKFKQLL effector T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-B*08:01 B2M MHCI -13051 chip0516_544402 5.95 13.55 Chip4 healthy_10 healthy TGTGCCAGTAGTCACCCTTCGGGACAGGGTCTTTATAGCAATCAGCCCCAGCATTTT CASSHPSGQGLYSNQPQHF TRBV19*01 TRBJ1-5*01 19.0 811.0 _CASSHPSGQGLYSNQPQHF 2 4612 NP44-52 FLU 0.92 474 NP44-52 129 4483 7 InfluenzaA NP CTELKLSDY transitional T cells between effector and memory populations PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*01:01 B2M MHCI -13052 chip0516_210826 7.55 10.57 Chip4 healthy_6 healthy TGTGCCGTGAGCTGCCAAGATCATCTTT CAVStg??ccKIIF TRAV8-1*01 TRAJ30*01 9.0 1491.0 TGTGCCAGCAGCTCGGGACAGGGGGACAACGAGCAGTTCTTC CASSSGQGDNEQFF TRBV11-3*01 TRBJ2-1*01 14.0 648.0 CAVStg??ccKIIF_CASSSGQGDNEQFF 1 6025 EBV-BLMF1 EBV 0.83 2531 EBV-BLMF1 144 5881 7 EBV BLMF1 GLCTLVAML transitional T cells between effector and memory populations PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*02:01 B2M MHCI -13053 chip0516_60938 11.49 8.8 Chip4 healthy_8 healthy _ 6746 6151 EBNA3A-193-201 EBV 0.74 1022 EBNA3A-193-201 149 6002 10 EBV EBNA3A FLRGRAYGL effector memory T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-B*08:01 B2M MHCI -13054 chip0516_455958 -1.97 8.15 Chip4 healthy_7 healthy TGCGCCAGCAGTCAATCGCTTTAGTTGCACAGATACGCAGTATTTT CASSQSLta??gtCTDTQYF TRBV4-3*01 TRBJ2-3*01 153.0 10232.0 _CASSQSLta??gtCTDTQYF 1 6890 MART1-ALA MART1 0.64 269 NEG 151 6739 2 HomoSapiens MART1 ALAGIGILTV Naive T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*02:01 B2M MHCI -13055 chip0516_305608 8.12 11.75 Chip4 healthy_8 healthy TGTGCCGTGAAGACGGACACCAATGCAGGCCAATCAACCTTT CAVKTDTNAGQSTF TRAV12-2*01 TRAJ27*01 2.0 90.0 TGTGCCAGCAGTGACTCGATAGGGTTTAATTCACCCCTCCACTTT CASSDSIGFNSPLHF TRBV6-4*01 TRBJ1-6*01 40.0 1981.0 CAVKTDTNAGQSTF_CASSDSIGFNSPLHF 1 5187 EBNA3A-193-201 EBV 0.86 1022 EBNA3A-193-201 148 5039 7 EBV EBNA3A FLRGRAYGL transitional T cells between effector and memory populations PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-B*08:01 B2M MHCI -13056 chip0516_404390 15.58 10.45 Chip4 healthy_8 healthy TGCATCCTGCCCCTTGCTGGTGGTACTAGCTATGGAAAGCTGACATTT CILPLAGGTSYGKLTF TRAV26-2*01 TRAJ52*01 40.0 2847.0 TGTGCCAGCAGCTCCGGACAGGCCTACGAGCAGTACTTC CASSSGQAYEQYF TRBV7-8*01 TRBJ2-7*01 62.0 3598.0 CILPLAGGTSYGKLTF_CASSSGQAYEQYF 40 4678 EBNA3A-193-201 EBV 0.89 1022 EBNA3A-193-201 135 4543 12 EBV EBNA3A FLRGRAYGL effector T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-B*08:01 B2M MHCI -13057 chip0516_43394 -0.95 7.5 Chip4 healthy_9 healthy _ 6746 7723 NP225-233 FLU 0.74 23 NP225-233 118 7605 3 InfluenzaA NP ILKGKFQTA Naive T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-B*08:01 B2M MHCI -13058 chip0516_709298 10.0 10.61 Chip4 healthy_6 healthy TGTGCTGTGGCCCTCTCAAGCAAATCAACCTTT CAVALSSKSTF TRAV8-3*01 TRAJ27*01 2.0 193.0 TGCGCCAGCAGCGGGGACGGAATGAACACTGAAGCTTTCTTT CASSGDGMNTEAFF TRBV10-2*01 TRBJ1-1*01 53.0 2900.0 CAVALSSKSTF_CASSGDGMNTEAFF 50 5449 EBV-LMP2A EBV 0.96 700 EBV-LMP2A 136 5313 9 EBV LMP2A CLGGLLTMV effector memory T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*02:01 B2M MHCI -13059 chip0516_48720 8.56 11.64 Chip4 healthy_8 healthy _ 6746 5497 EBNA3A-193-201 EBV 0.83 1022 EBNA3A-193-201 140 5357 7 EBV EBNA3A FLRGRAYGL transitional T cells between effector and memory populations PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-B*08:01 B2M MHCI -13060 chip0516_818676 9.89 13.08 Chip4 healthy_7 healthy TGTGCCAGCAGCGGACAGGGAGGGCACTATGGCTACACCTTC CASSGQGGHYGYTF TRBV6-1*01 TRBJ1-2*01 10.0 531.0 _CASSGQGGHYGYTF 1 2948 EBV-LMP2-FLY EBV 0.56 355 NEG 123 2825 6 EBV LMP2 FLYALALLL central memory T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*02:01 B2M MHCI -13061 chip0516_300096 12.05 12.36 Chip4 healthy_7 healthy TGTTCTGTGGAGGGCGCCTCGACACCAATGCAGGCAAATCAACCTTT CSVEGASac?TNAGKSTF TRAV2*01 TRAJ27*01 11.0 466.0 CSVEGASac?TNAGKSTF_ 1 2836 EBV-BLMF1 EBV 0.86 2531 EBV-BLMF1 135 2701 11 EBV BLMF1 GLCTLVAML effector T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*02:01 B2M MHCI -13062 chip0516_202181 -2.74 12.21 Chip4 healthy_8 healthy TGTGCCAGCAGAGGTACTTTGGACGTAGGAACGCCCGAGCAGTACTTC CASRGTLDVGTPEQYF TRBV13*01 TRBJ2-7*01 3.0 75.0 _CASRGTLDVGTPEQYF 1 4320 GAD2-MMI-8 GAD65 0.86 40 GAD2-MMI-8 152 4168 1 HomoSapiens GAD2 MMIARFKM Naive T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-B*08:01 B2M MHCI -13063 chip0516_158682 7.75 10.92 Chip4 healthy_8 healthy TGCATCCTGCCCCTTGCTGGTGGTACTAGCTACGGAAAGCTGACATTT CILPLAGGTSYGKLTF TRAV26-2*01 TRAJ52*01 25.0 1462.0 CILPLAGGTSYGKLTF_ 55 6523 EBNA3A-193-201 EBV 0.82 1022 EBNA3A-193-201 148 6375 7 EBV EBNA3A FLRGRAYGL transitional T cells between effector and memory populations PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-B*08:01 B2M MHCI -13064 chip0516_854155 5.08 9.53 Chip4 healthy_8 healthy TGTGCCAGCAGCTTAGGACAGGCCTACGAGCAGTACTTC CASSLGQAYEQYF TRBV7-8*01 TRBJ2-7*01 22.0 1378.0 _CASSLGQAYEQYF 175 4627 EBNA3A-193-201 EBV 0.88 1022 EBNA3A-193-201 133 4494 6 EBV EBNA3A FLRGRAYGL central memory T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-B*08:01 B2M MHCI -13065 chip0516_594421 5.9 12.17 Chip4 healthy_8 healthy TGTGTTGTGCTTCAGGATACAGCACCCTCACCTTT CVVLQga?YSTLTF TRAV8-2*01 TRAJ11*01 27.0 2780.0 CVVLQga?YSTLTF_ 1 6130 NP44-52 FLU 0.55 474 NP44-52 144 5986 7 InfluenzaA NP CTELKLSDY transitional T cells between effector and memory populations PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*01:01 B2M MHCI -13066 chip0516_721365 -3.18 13.77 Chip4 healthy_8 healthy TGTGCTCTCAGGGTACCCTATCTAACTTTGGACATGTGGCATTAACCTTT CALRVPYLa?cFGHVALTF TRAV9-2*01 TRAJ48*01 23.0 1023.0 TGTGCCAGCAGCGGGACTTACGAAGAGACCCAGTACTTC CASSGTYEETQYF TRBV7-9*01 TRBJ2-5*01 18.0 1741.0 CALRVPYLa?cFGHVALTF_CASSGTYEETQYF 1 4968 NP44-52 FLU 0.9 474 NEG 134 4834 1 InfluenzaA NP CTELKLSDY Naive T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*01:01 B2M MHCI -13067 chip0516_354381 10.61 9.42 Chip4 healthy_6 healthy TGCGCCAGCAGCGGGGACGGAATGAACACTGAAGCTTTCTTT CASSGDGMNTEAFF TRBV10-2*01 TRBJ1-1*01 1.0 17.0 _CASSGDGMNTEAFF 131 5345 EBV-LMP2A EBV 0.9 700 EBV-LMP2A 146 5199 9 EBV LMP2A CLGGLLTMV effector memory T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*02:01 B2M MHCI -13068 chip0516_360984 11.52 7.36 Chip4 healthy_8 healthy TGTGCCAGCAGCTTAGGACAGGCCTACGAGCAGTACTTC CASSLGQAYEQYF TRBV7-8*01 TRBJ2-7*01 15.0 1370.0 _CASSLGQAYEQYF 175 5224 EBNA3A-193-201 EBV 0.82 1022 EBNA3A-193-201 158 5066 10 EBV EBNA3A FLRGRAYGL effector memory T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-B*08:01 B2M MHCI -13069 chip0516_40516 -1.7 8.27 Chip4 healthy_9 healthy TGTGCCGTGAATGCGGGGTGCAGGCAACATGCTCACCTTT CAVNAGtg??caGNMLTF TRAV8-1*01 TRAJ39*01 1.0 48.0 CAVNAGtg??caGNMLTF_ 1 7102 EBNA3A-158-166 EBV 0.85 444 EBNA3A-158-166 125 6977 3 EBV EBNA3A QAKWRLQTL Naive T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-B*08:01 B2M MHCI -13070 chip0516_439037 5.57 13.22 Chip4 healthy_8 healthy _ 6746 6108 NP30-38 FLU 0.73 72 NP30-38 135 5973 7 InfluenzaA NP RPIIRPATL transitional T cells between effector and memory populations PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-B*08:01 B2M MHCI -13071 chip0516_864688 -1.52 9.51 Chip4 healthy_9 healthy TGTGCTCTGAGTGAGGTTTCAGGAAACACACCTCTTGTCTTT CALSEVSGNTPLVF TRAV19*01 TRAJ29*01 4.0 267.0 CALSEVSGNTPLVF_ 1 6159 GAD2-MMI-8 GAD65 0.51 40 GAD2-MMI-8 141 6018 3 HomoSapiens GAD2 MMIARFKM Naive T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-B*08:01 B2M MHCI -13072 chip0516_520750 -2.41 8.61 Chip4 healthy_6 healthy _ 6746 5719 MART1-A28L MART1 0.76 84 MART1-A28L 129 5590 2 HomoSapiens MART1 ALGIGILTV Naive T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*02:01 B2M MHCI -13073 chip0516_303585 -2.38 7.59 Chip4 healthy_9 healthy _ 6746 5786 GFAP-LRL-8 GFAP 0.6 18 GFAP-LRL-8 122 5664 3 HomoSapiens GFAP LRLRLDQL Naive T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-B*08:01 B2M MHCI -13074 chip0516_699911 6.9 10.87 Chip4 healthy_8 healthy CGTGGTGTTGATGCAGTAATAAGGGTATGCACTACACTTC RGVDAVat??aaGYALHF TRAV8-3*01 TRAJ41*01 5.0 616.0 RGVDAVat??aaGYALHF_ 1 8105 EBNA3A-158-166 EBV 0.9 444 EBNA3A-158-166 137 7968 7 EBV EBNA3A QAKWRLQTL transitional T cells between effector and memory populations PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-B*08:01 B2M MHCI -13075 chip0516_663376 -3.55 12.52 Chip4 healthy_8 healthy TGTGCCATCCTAGCCCCTGGAAACACCATATATTTT CAILAPGNTIYF TRBV10-3*01 TRBJ1-3*01 48.0 3107.0 _CAILAPGNTIYF 1 5444 ZNT8-YAK-9 ZNT8 0.44 59 ZNT8-YAK-9 123 5321 1 HomoSapiens ZNT8 YAKWKLCSA Naive T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-B*08:01 B2M MHCI -13076 chip0516_836091 6.8 13.54 Chip4 healthy_8 healthy _ 6746 4130 NP30-38 FLU 0.77 72 NP30-38 144 3986 7 InfluenzaA NP RPIIRPATL transitional T cells between effector and memory populations PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-B*08:01 B2M MHCI -13077 chip0516_831122 5.54 8.82 Chip4 healthy_6 healthy _ 6746 7909 EBV-LMP2-FLY EBV 1.0 355 EBV-LMP2-FLY 149 7760 6 EBV LMP2 FLYALALLL central memory T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*02:01 B2M MHCI -13078 chip0516_520929 6.51 12.75 Chip4 healthy_8 healthy TGTGCAATGAGAAGGATTACCTCAGGAACCTACAAATACATCTTT CAMRRITSGTYKYIF TRAV14/DV4*01 TRAJ40*01 6.0 168.0 TGTGCCAGCAGTGCCGCCTCTCCGGACAGGGGGAGTAGGAGCTCCTACAATGAGCAGTTCTTC CASSAASPDRGSRSSYNEQFF TRBV11-1*01 TRBJ2-1*01 9.0 467.0 CAMRRITSGTYKYIF_CASSAASPDRGSRSSYNEQFF 1 4594 NP380-388 FLU 0.69 60 NP380-388 122 4472 7 InfluenzaA NP ELRSRYWAI transitional T cells between effector and memory populations PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-B*08:01 B2M MHCI -13079 chip0516_32477 9.42 8.33 Chip4 healthy_8 healthy TGCATCCTGCCCCTTGCTGGTGGTACTAGCTATGGAAAGCTGACATTT CILPLAGGTSYGKLTF TRAV26-2*01 TRAJ52*01 1.0 19.0 TGTGCCAGCAGCTTAGGACAGGCCTACGAGCAGTACTTC CASSLGQAYEQYF TRBV7-8*01 TRBJ2-7*01 25.0 1629.0 CILPLAGGTSYGKLTF_CASSLGQAYEQYF 308 6872 EBNA3A-193-201 EBV 0.83 1022 EBNA3A-193-201 175 6697 8 EBV EBNA3A FLRGRAYGL effector memory T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-B*08:01 B2M MHCI -13080 chip0516_342239 -3.72 9.1 Chip4 healthy_7 healthy TGTGCAATGAGTAGGGCTAACTTTGGAAATGAGAAATTAACCTTT CAMSRANFGNEKLTF TRAV12-3*01 TRAJ48*01 9.0 245.0 CAMSRANFGNEKLTF_ 1 6378 PGT-178 PGT 0.74 1480 PGT-178 138 6240 2 HomoSapiens PGT LLAGIGTVPI Naive T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*02:01 B2M MHCI -13081 chip0516_512789 9.53 9.75 Chip4 healthy_8 healthy _ 6746 7136 EBNA3A-158-166 EBV 0.82 444 EBNA3A-158-166 154 6982 8 EBV EBNA3A QAKWRLQTL effector memory T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-B*08:01 B2M MHCI -13082 chip0516_205363 4.9 10.84 Chip4 healthy_7 healthy TGTACAATGAACGTTGCGGATAGCAACTATAAATTGATCTTC CTMNVADSNYKLIF TRAV14/DV4*01 TRAJ12*01 3.0 115.0 CTMNVADSNYKLIF_ 1 3309 M1 FLU 0.75 1250 M1 165 3144 6 InfluenzaA M1 GILGFVFTL central memory T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*02:01 B2M MHCI -13083 chip0516_124700 -0.69 7.27 Chip4 healthy_9 healthy _ 6746 6483 NP44-52 FLU 0.88 474 NP44-52 149 6334 3 InfluenzaA NP CTELKLSDY Naive T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*01:01 B2M MHCI -13084 chip0516_286858 6.44 9.88 Chip4 healthy_8 healthy TGTGCCAGCAGTCTAATGGGGACAGGGGGCTTGAGTGAAAAACTGTTTTTT CASSLMGTGGLSEKLFF TRBV28*01 TRBJ1-4*01 13.0 482.0 _CASSLMGTGGLSEKLFF 18 6187 EBNA3A-158-166 EBV 0.48 444 EBNA3A-158-166 169 6018 6 EBV EBNA3A QAKWRLQTL central memory T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-B*08:01 B2M MHCI -13085 chip0516_546571 15.98 11.15 Chip4 healthy_10 healthy TGCGCCAGCAGTACTTCCAGGGGTTCTGGAAACACCATATATTTC CASSTSRGSGNTIYF TRBV4-1*01 TRBJ1-3*01 7.0 326.0 _CASSTSRGSGNTIYF 1 2480 BZLF1-190-197 EBV 0.83 2156 BZLF1-190-197 179 2301 12 EBV BZLF1 RAKFKQLL effector T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-B*08:01 B2M MHCI -13086 chip0516_836904 14.79 12.38 Chip4 healthy_8 healthy TGTGCCAGCAGCTTAGGACAGGCCTACGAGCAGTACTTC CASSLGQAYEQYF TRBV7-8*01 TRBJ2-7*01 2.0 136.0 _CASSLGQAYEQYF 175 3573 EBNA3A-193-201 EBV 0.69 1022 EBNA3A-193-201 142 3431 12 EBV EBNA3A FLRGRAYGL effector T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-B*08:01 B2M MHCI -13087 chip0516_218951 10.34 9.54 Chip4 healthy_6 healthy TGCGCCAGCAGCGGGGACGGAATGAACACTGAAGCTTTCTTT CASSGDGMNTEAFF TRBV10-2*01 TRBJ1-1*01 20.0 716.0 _CASSGDGMNTEAFF 131 6418 EBV-LMP2A EBV 0.91 700 EBV-LMP2A 144 6274 9 EBV LMP2A CLGGLLTMV effector memory T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*02:01 B2M MHCI -13088 chip0516_884488 5.48 8.73 Chip4 healthy_6 healthy TGTGCCGTGAACGGAGGGGAACGCAGTGGAGGTAGCAACTATAAACTGACATTT CAVNGGERSGGSNYKLTF TRAV12-2*01 TRAJ53*01 19.0 428.0 TGTGCCAGCAGCGTCGGGGGGATTTCACCCCTCCACTTT CASSVGGISPLHF TRBV9*01 TRBJ1-6*01 30.0 2065.0 CAVNGGERSGGSNYKLTF_CASSVGGISPLHF 2 7996 EBV-LMP1-1 EBV 0.88 237 EBV-LMP1-1 178 7818 6 EBV LMP1 YLLEMLWRL central memory T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*02:01 B2M MHCI -13089 chip0516_56072 11.91 13.34 Chip4 healthy_8 healthy TGTGCTGGCGCTCGTTGTGGGCGGAGCCACTATAAACTGACATTT CAGARCGRSHYKLTF TRAV27*01 TRAJ53*01 17.0 620.0 TGTGCCAGCAGCTTCCAAACAGGGGAGATCACTGAAGCTTTCTTT CASSFQTGEITEAFF TRBV7-6*01 TRBJ1-1*01 18.0 855.0 CAGARCGRSHYKLTF_CASSFQTGEITEAFF 1 2608 BZLF1-190-197 EBV 0.71 2156 NEG 124 2484 11 EBV BZLF1 RAKFKQLL effector T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-B*08:01 B2M MHCI -13090 chip0516_648037 9.53 8.85 Chip4 healthy_9 healthy _ 6746 4316 ZNT8-VTD-9 ZNT8 0.88 65 ZNT8-VTD-9 120 4196 8 HomoSapiens ZNT8 VTDAAHLLI effector memory T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*01:01 B2M MHCI -13091 chip0516_219852 10.59 10.06 Chip4 healthy_6 healthy TGTGCTGTGGCCCTCTCAAGCAAATCAACCTTT CAVALSSKSTF TRAV8-3*01 TRAJ27*01 9.0 710.0 TGCGCCAGCAGCGGGGACGGAATGAACACTGAAGCTTTCTTT CASSGDGMNTEAFF TRBV10-2*01 TRBJ1-1*01 12.0 437.0 CAVALSSKSTF_CASSGDGMNTEAFF 50 5443 EBV-LMP2A EBV 0.98 700 EBV-LMP2A 121 5322 9 EBV LMP2A CLGGLLTMV effector memory T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*02:01 B2M MHCI -13092 chip0516_34448 10.81 11.75 Chip4 healthy_6 healthy _ 6746 4364 EBV-LMP2A EBV 0.96 700 EBV-LMP2A 138 4226 9 EBV LMP2A CLGGLLTMV effector memory T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*02:01 B2M MHCI -13093 chip0516_588337 5.47 8.93 Chip4 healthy_6 healthy TGTGCTGTGGCCCTCTCAAGCAAATCAACCTTT CAVALSSKSTF TRAV8-3*01 TRAJ27*01 3.0 209.0 CAVALSSKSTF_ 58 10413 EBV-LMP2A EBV 0.98 700 EBV-LMP2A 163 10250 6 EBV LMP2A CLGGLLTMV central memory T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*02:01 B2M MHCI -13094 chip0516_794610 -2.17 8.14 Chip4 healthy_7 healthy TGTGCCAGCAGCGACTTCGGGACAGAAAACATTCAGTACTTC CASSDFGTENIQYF TRBV2*01 TRBJ2-4*01 59.0 3529.0 _CASSDFGTENIQYF 1 6899 PGT-178 PGT 0.73 1480 NEG 127 6772 2 HomoSapiens PGT LLAGIGTVPI Naive T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*02:01 B2M MHCI -13095 chip0516_476765 11.04 10.58 Chip4 healthy_6 healthy TGCAGCGTTGGGTCTGGGGGAACTAATGAAAAACTGTTTTTT CSVGSGGTNEKLFF TRBV29-1*01 TRBJ1-4*01 5.0 178.0 _CSVGSGGTNEKLFF 6 3809 EBV-BLMF1 EBV 0.83 2531 NEG 143 3666 9 EBV BLMF1 GLCTLVAML effector memory T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*02:01 B2M MHCI -13096 chip0516_181496 -1.01 6.87 Chip4 healthy_8 healthy TGTGCAGGTACCTTCGCTGGTTCTGCAAGGCAACTGACCTTT CAGTFAGSARQLTF TRAV27*01 TRAJ22*01 56.0 4084.0 TGTGCCAGCAGCTCTCCCTGGGGGACTGAAGCTTTCTTT CASSSPWGTEAFF TRBV7-9*01 TRBJ1-1*01 6.0 392.0 CAGTFAGSARQLTF_CASSSPWGTEAFF 1 6208 ZNT8-YAY-8 ZNT8 0.88 54 NEG 126 6082 3 HomoSapiens ZNT8 YAYAKWKL Naive T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-B*08:01 B2M MHCI -13097 chip0516_824190 11.69 8.09 Chip4 healthy_6 healthy TGTGCTACGGAAGGGAATTCAGGATACAGCACCCTCACCTTT CATEGNSGYSTLTF TRAV17*01 TRAJ11*01 78.0 4078.0 CATEGNSGYSTLTF_ 2 6354 EBV-LMP2-FLY EBV 1.0 355 EBV-LMP2-FLY 147 6207 10 EBV LMP2 FLYALALLL effector memory T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*02:01 B2M MHCI -13098 chip0516_719637 -1.45 10.33 Chip4 healthy_8 healthy TGTGCCAGCAGTTACTCATCCCAGGGTCGCTACGAGCAGTACTTC CASSYSSQGRYEQYF TRBV6-5*01 TRBJ2-7*01 9.0 345.0 _CASSYSSQGRYEQYF 1 6432 ZNT8-AAK-9 ZNT8 0.82 4 ZNT8-AAK-9 139 6293 3 HomoSapiens ZNT8 AAKMYAFTL Naive T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-B*08:01 B2M MHCI -13099 chip0516_767269 10.98 10.84 Chip4 healthy_8 healthy TGTGCCAGCAGTTCAACGTTCCCCAACACCGGGGAGCTGTTTTTT CASSSTFPNTGELFF TRBV3-1*01 TRBJ2-2*01 11.0 622.0 _CASSSTFPNTGELFF 2 4051 BZLF1-190-197 EBV 0.84 2156 BZLF1-190-197 147 3904 9 EBV BZLF1 RAKFKQLL effector memory T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-B*08:01 B2M MHCI -13100 chip0516_606076 14.17 13.3 Chip4 healthy_9 healthy TGTGCCATCAGTGAGTCGAATACGCAGTATTTT CAISESNTQYF TRBV10-3*01 TRBJ2-3*01 1.0 18.0 _CAISESNTQYF 1 1921 BZLF1-190-197 EBV 0.66 2156 BZLF1-190-197 135 1786 12 EBV BZLF1 RAKFKQLL effector T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-B*08:01 B2M MHCI -13101 chip0516_177994 10.24 9.79 Chip4 healthy_6 healthy TGTGCTGTGGCCCTCTCAAGCAAATCAACCTTT CAVALSSKSTF TRAV8-3*01 TRAJ27*01 3.0 360.0 CAVALSSKSTF_ 58 7132 EBV-LMP2A EBV 0.97 700 EBV-LMP2A 125 7007 9 EBV LMP2A CLGGLLTMV effector memory T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*02:01 B2M MHCI -13102 chip0516_233815 -0.99 8.32 Chip4 healthy_7 healthy TGTGCAATGAGAGTGTTCCATCAGGGAGCCCAGAAGCTGGTATTT CAMRVFHQGAQKLVF TRAV14/DV4*01 TRAJ54*01 14.0 476.0 TGTGCCAGCAGTTTCGTCCAGCAGGGATATCAGCCCCAGCATTTT CASSFVQQGYQPQHF TRBV12-3*01,TRBV12-4*01 TRBJ1-5*01 59.0 3352.0 CAMRVFHQGAQKLVF_CASSFVQQGYQPQHF 1 5369 CVB3-P3A CVB 0.94 77 CVB3-P3A 133 5236 4 CoxsackievirusB P3A GIIYIIYKL Naive T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*02:01 B2M MHCI -13103 chip0516_13435 11.73 7.18 Chip4 healthy_7 healthy TGTGCCAGCAGTTATCAGGGGGGCTCCTATGGCTACACCTTC CASSYQGGSYGYTF TRBV6-5*01 TRBJ1-2*01 4.0 196.0 _CASSYQGGSYGYTF 2 4333 EBV-LMP2-FLY EBV 0.88 355 EBV-LMP2-FLY 120 4213 10 EBV LMP2 FLYALALLL effector memory T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*02:01 B2M MHCI -13104 chip0516_626324 8.43 8.43 Chip4 healthy_8 healthy _ 6746 6410 EBNA3A-158-166 EBV 0.69 444 EBNA3A-158-166 128 6282 8 EBV EBNA3A QAKWRLQTL effector memory T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-B*08:01 B2M MHCI -13105 chip0516_262893 7.73 11.65 Chip4 healthy_6 healthy TGTGCAATGAGCGCGGCTGGAGCCAATAGTAAGCTGACATTT CAMSAAGANSKLTF TRAV12-3*01 TRAJ56*01 34.0 2151.0 TGTGCCAGCAGCCCTCCCTACAATGAGCAGTTCTTC CASSPPYNEQFF TRBV7-8*01 TRBJ2-1*01 14.0 1288.0 CAMSAAGANSKLTF_CASSPPYNEQFF 4 5529 ZNT8-115-123 ZNT8 0.95 74 ZNT8-115-123 130 5399 7 HomoSapiens ZNT8 LLSLFSLWL transitional T cells between effector and memory populations PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*02:01 B2M MHCI -13106 chip0516_118829 9.91 9.54 Chip4 healthy_6 healthy TGTGCTGTGGCCCTCTCAAGCAAATCAACCTTT CAVALSSKSTF TRAV8-3*01 TRAJ27*01 2.0 385.0 TGCGCCAGCAGCGAGGACGGAATGAACACTGAAGCCTTCTTT CASSEDGMNTEAFF TRBV10-2*01 TRBJ1-1*01 18.0 913.0 CAVALSSKSTF_CASSEDGMNTEAFF 1 5041 EBV-LMP2A EBV 0.94 700 EBV-LMP2A 149 4892 9 EBV LMP2A CLGGLLTMV effector memory T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*02:01 B2M MHCI -13107 chip0516_102768 9.53 8.91 Chip4 healthy_6 healthy TGCGCCAGCAGCGGGGACGGAATGAACACTGAAGCTTTCTTT CASSGDGMNTEAFF TRBV10-2*01 TRBJ1-1*01 12.0 707.0 _CASSGDGMNTEAFF 131 6344 EBV-LMP2A EBV 0.93 700 EBV-LMP2A 141 6203 8 EBV LMP2A CLGGLLTMV effector memory T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*02:01 B2M MHCI -13108 chip0516_752013 -1.82 8.13 Chip4 healthy_8 healthy TGTGCAATGATGGACAACTTCAACAAATTTTACTTT CAMMDNFNKFYF TRAV12-3*01 TRAJ21*01 36.0 3462.0 TGTGCCAGTAGTAGCACAGGGATTAGGACTGAAGCTTTCTTT CASSSTGIRTEAFF TRBV19*01 TRBJ1-1*01 44.0 2090.0 CAMMDNFNKFYF_CASSSTGIRTEAFF 1 9112 NP44-52 FLU 0.88 474 NP44-52 138 8974 3 InfluenzaA NP CTELKLSDY Naive T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*01:01 B2M MHCI -13109 chip0516_383284 11.01 7.08 Chip4 healthy_6 healthy _ 6746 7097 EBV-LMP2A EBV 0.87 700 EBV-LMP2A 175 6922 10 EBV LMP2A CLGGLLTMV effector memory T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*02:01 B2M MHCI -13110 chip0516_187777 10.24 10.3 Chip4 healthy_10 healthy _ 6746 4506 BZLF1-190-197 EBV 0.88 2156 BZLF1-190-197 139 4367 9 EBV BZLF1 RAKFKQLL effector memory T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-B*08:01 B2M MHCI -13111 chip0516_339708 11.0 9.65 Chip4 healthy_6 healthy TGCGCCAGCAGCGGGGACGGAATGAACACTGAAGCTTTCTTT CASSGDGMNTEAFF TRBV10-2*01 TRBJ1-1*01 50.0 3080.0 _CASSGDGMNTEAFF 131 8399 EBV-LMP2A EBV 1.0 700 EBV-LMP2A 154 8245 9 EBV LMP2A CLGGLLTMV effector memory T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*02:01 B2M MHCI -13112 chip0516_242882 10.94 10.25 Chip4 healthy_6 healthy _ 6746 5933 EBV-LMP2A EBV 0.97 700 EBV-LMP2A 129 5804 9 EBV LMP2A CLGGLLTMV effector memory T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*02:01 B2M MHCI -13113 chip0516_17783 5.47 9.04 Chip4 healthy_8 healthy TGTGCCAGCAGCTCCGGACAGGCCTACAAGCAGTACTTC CASSSGQAYKQYF TRBV7-8*01 TRBJ2-7*01 11.0 1050.0 _CASSSGQAYKQYF 2 5079 EBNA3A-193-201 EBV 0.93 1022 EBNA3A-193-201 109 4970 6 EBV EBNA3A FLRGRAYGL central memory T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-B*08:01 B2M MHCI -13114 chip0516_884129 10.86 11.92 Chip4 healthy_8 healthy TGCATCGTCATTTTTGAGGGGGCAGGCAACATGCTCACCTTT CIVIFEGAGNMLTF TRAV26-1*01 TRAJ39*01 53.0 4063.0 CIVIFEGAGNMLTF_ 1 4148 BZLF1-190-197 EBV 0.85 2156 BZLF1-190-197 149 3999 9 EBV BZLF1 RAKFKQLL effector memory T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-B*08:01 B2M MHCI -13115 chip0516_826158 6.01 12.67 Chip4 healthy_7 healthy TGTGCAGGAGAGGGAGGTGGAAGCCAAGGAAATCTCATCTTT CAGEGGGSQGNLIF TRAV27*01 TRAJ42*01 5.0 116.0 TGTGCCAGTAGTATTCGGAGCTCCTACGAGCAGTACTTC CASSIRSSYEQYF TRBV19*01 TRBJ2-7*01 6.0 742.0 CAGEGGGSQGNLIF_CASSIRSSYEQYF 1 5392 M1 FLU 1.0 1250 M1 156 5236 7 InfluenzaA M1 GILGFVFTL transitional T cells between effector and memory populations PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*02:01 B2M MHCI -13116 chip0516_172465 9.89 9.72 Chip4 healthy_6 healthy _ 6746 5648 EBV-LMP2A EBV 0.87 700 EBV-LMP2A 136 5512 8 EBV LMP2A CLGGLLTMV effector memory T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*02:01 B2M MHCI -13117 chip0516_462991 14.44 7.81 Chip4 healthy_8 healthy TGCATCCTGCCCCTTGCTGGTGGTACTAGCTATGGAAAGCTGACATTT CILPLAGGTSYGKLTF TRAV26-2*01 TRAJ52*01 80.0 4236.0 TGTGCCAGCAGCTCCGGACAGGCCTACGAGCAGTACTTC CASSSGQAYEQYF TRBV7-8*01 TRBJ2-7*01 19.0 1206.0 CILPLAGGTSYGKLTF_CASSSGQAYEQYF 40 3868 EBNA3A-193-201 EBV 0.71 1022 EBNA3A-193-201 154 3714 10 EBV EBNA3A FLRGRAYGL effector memory T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-B*08:01 B2M MHCI -13118 chip0516_291696 -0.97 7.51 Chip4 healthy_7 healthy TGTGCTCTGAGTGGGCTATACAATAACAATGACATGCGCTTT CALSGLYNNNDMRF TRAV9-2*01 TRAJ43*01 45.0 1995.0 TGTGCCAGCAGTTACTCGAGTAGTCAGCCCCAGCATTTT CASSYSSSQPQHF TRBV6-5*01 TRBJ1-5*01 20.0 936.0 CALSGLYNNNDMRF_CASSYSSSQPQHF 1 6227 EBV-LMP2A EBV 0.57 700 NEG 145 6082 3 EBV LMP2A CLGGLLTMV Naive T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*02:01 B2M MHCI -13119 chip0516_192848 9.96 10.54 Chip4 healthy_6 healthy _ 6746 5102 EBV-LMP2A EBV 1.0 700 EBV-LMP2A 134 4968 9 EBV LMP2A CLGGLLTMV effector memory T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*02:01 B2M MHCI -13120 chip0516_451306 -2.41 8.81 Chip4 healthy_8 healthy TGTGTGGTGAACAACAATGACATGCGCTTT CVVNNNDMRF TRAV12-1*01 TRAJ43*01 1.0 17.0 CVVNNNDMRF_ 1 7051 GAD2-VSA-10 GAD65 0.87 21 GAD2-VSA-10 139 6912 2 HomoSapiens GAD2 VSATAGTTVY Naive T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*01:01 B2M MHCI -13121 chip0516_3406 10.09 7.57 Chip4 healthy_6 healthy TGCGCCAGCAGCGGGGACGGAATGAACACTGAAGCTTTCTTT CASSGDGMNTEAFF TRBV10-2*01 TRBJ1-1*01 25.0 1979.0 _CASSGDGMNTEAFF 131 5988 EBV-LMP2A EBV 0.97 700 EBV-LMP2A 157 5831 10 EBV LMP2A CLGGLLTMV effector memory T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*02:01 B2M MHCI -13122 chip0516_268609 5.28 10.03 Chip4 healthy_8 healthy TGTGCTGTGACCCTTACCCTCTACTCTGGGGCTGGGAGTTACCAACTCACTTTC CAVTLTLYSGAGSYQLTF TRAV21*01 TRAJ28*01 25.0 1328.0 TGTGCCAGCAGTTTAATGGGGACAGGGGGCTTGAGTGAAAAACTGTTTTTT CASSLMGTGGLSEKLFF TRBV28*01 TRBJ1-4*01 45.0 1780.0 CAVTLTLYSGAGSYQLTF_CASSLMGTGGLSEKLFF 19 8290 EBNA3A-158-166 EBV 0.78 444 EBNA3A-158-166 135 8155 6 EBV EBNA3A QAKWRLQTL central memory T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-B*08:01 B2M MHCI -13123 chip0516_688494 10.26 9.9 Chip4 healthy_8 healthy TGTGCCAGCAGCTTATTGGCTACAGATACGCAGTATTTT CASSLLATDTQYF TRBV7-3*01 TRBJ2-3*01 4.0 337.0 _CASSLLATDTQYF 1 6084 BZLF1-190-197 EBV 0.71 2156 NEG 123 5961 9 EBV BZLF1 RAKFKQLL effector memory T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-B*08:01 B2M MHCI -13124 chip0516_592815 13.18 7.72 Chip4 healthy_8 healthy TGCATCCTGCCCCTTGCTGGTGGTACTAGCTATGGAAAGCTGACATTT CILPLAGGTSYGKLTF TRAV26-2*01 TRAJ52*01 34.0 2117.0 TGTGCCAGCAGCTTAGGACAGGCCTACGAGCAGTACTTC CASSLGQAYEQYF TRBV7-8*01 TRBJ2-7*01 29.0 1832.0 CILPLAGGTSYGKLTF_CASSLGQAYEQYF 308 5977 EBNA3A-193-201 EBV 0.65 1022 EBNA3A-193-201 151 5826 10 EBV EBNA3A FLRGRAYGL effector memory T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-B*08:01 B2M MHCI -13125 chip0516_445390 5.84 13.56 Chip4 healthy_8 healthy TGCGCCAGCAGCCAAGATGGGGTGCCAGGGGGCAACGAGCAGTACTTC CASSQDGVPGGNEQYF TRBV4-1*01 TRBJ2-7*01 9.0 576.0 _CASSQDGVPGGNEQYF 3 5580 NP44-52 FLU 0.87 474 NP44-52 129 5451 7 InfluenzaA NP CTELKLSDY transitional T cells between effector and memory populations PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*01:01 B2M MHCI -13126 chip0516_253007 -1.51 9.66 Chip4 healthy_9 healthy TGTGCAGCAAGTTTAGGAGGATACAGCACCCTCACCTTT CAASLGGYSTLTF TRAV13-1*01 TRAJ11*01 51.0 2487.0 TGCAGCGTTGAGGATTGGCTAGCTGGTTCCTACGAGCAGTACTTC CSVEDWLAGSYEQYF TRBV29-1*01 TRBJ2-7*01 220.0 12960.0 CAASLGGYSTLTF_CSVEDWLAGSYEQYF 1 4215 ZNT8-YAK-9 ZNT8 0.79 59 ZNT8-YAK-9 131 4084 3 HomoSapiens ZNT8 YAKWKLCSA Naive T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-B*08:01 B2M MHCI -13127 chip0516_225269 11.06 8.67 Chip4 healthy_8 healthy TGTGCTCTCCCTCCGGTATCAGATGGCCAGAAGCTGCTCTTT CALPPVSDGQKLLF TRAV9-2*01 TRAJ16*01 29.0 2346.0 TGCAGTGCTAGAGACACTACCTACGAGCAGTACTTC CSARDTTYEQYF TRBV20-1*01 TRBJ2-7*01 19.0 1828.0 CALPPVSDGQKLLF_CSARDTTYEQYF 1 4744 GAD2-SRK-8 GAD65 0.71 10 GAD2-SRK-8 146 4598 10 HomoSapiens GAD2 SRKHKWKL effector memory T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-B*08:01 B2M MHCI -13128 chip0516_150347 5.81 12.3 Chip4 healthy_9 healthy _ 6746 4514 NP380-388 FLU 0.58 60 NEG 128 4386 7 InfluenzaA NP ELRSRYWAI transitional T cells between effector and memory populations PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-B*08:01 B2M MHCI -13129 chip0516_241720 9.61 9.7 Chip4 healthy_6 healthy _ 6746 7573 EBV-LMP2A EBV 0.95 700 EBV-LMP2A 158 7415 9 EBV LMP2A CLGGLLTMV effector memory T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*02:01 B2M MHCI -13130 chip0516_100524 12.27 7.42 Chip4 healthy_6 healthy TGTGCTGTGGCCCTCTCAAGCAAATCAACCTTT CAVALSSKSTF TRAV8-3*01 TRAJ27*01 17.0 1510.0 TGCGCCAGCAGCGGGGACGGAATGAACACTGAAGCTTTCTTT CASSGDGMNTEAFF TRBV10-2*01 TRBJ1-1*01 24.0 1334.0 CAVALSSKSTF_CASSGDGMNTEAFF 50 5950 EBV-LMP2A EBV 0.97 700 EBV-LMP2A 142 5808 10 EBV LMP2A CLGGLLTMV effector memory T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*02:01 B2M MHCI -13131 chip0516_526300 8.72 10.5 Chip4 healthy_8 healthy TGCCTCGTGGGTGGCTCCTCGAATTCTGGGGGTTACCAGAAAGTTACCTTT CLVGGSSNSGGYQKVTF TRAV4*01 TRAJ13*01 2.0 65.0 CLVGGSSNSGGYQKVTF_ 1 5413 EBNA3A-158-166 EBV 0.93 444 EBNA3A-158-166 168 5245 8 EBV EBNA3A QAKWRLQTL effector memory T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-B*08:01 B2M MHCI -13132 chip0516_670095 7.04 11.97 Chip4 healthy_8 healthy TGCATCCTGCCCCTTGCTGGTGGTACTAGCTATGGAAAGCTGACATTT CILPLAGGTSYGKLTF TRAV26-2*01 TRAJ52*01 29.0 2121.0 TGTGCCAGCAGCTTAGGACAGGCCTACGAGCAGTACTTC CASSLGQAYEQYF TRBV7-8*01 TRBJ2-7*01 5.0 408.0 CILPLAGGTSYGKLTF_CASSLGQAYEQYF 308 5110 EBNA3A-193-201 EBV 0.81 1022 EBNA3A-193-201 140 4970 7 EBV EBNA3A FLRGRAYGL transitional T cells between effector and memory populations PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-B*08:01 B2M MHCI -13133 chip0516_634414 6.59 12.45 Chip4 healthy_7 healthy TGTGCCAGTAGTATAAGGAACACCGGGGAGCTGTTTTTT CASSIRNTGELFF TRBV19*01 TRBJ2-2*01 38.0 2004.0 _CASSIRNTGELFF 1 5096 M1 FLU 0.84 1250 M1 134 4962 7 InfluenzaA M1 GILGFVFTL transitional T cells between effector and memory populations PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*02:01 B2M MHCI -13134 chip0516_163783 11.47 13.42 Chip4 healthy_8 healthy TGCATCCTGCCCCTTGCTGGTGGTACTCGCTATGTCATGCTGACATTT CILPLAGGTRYVMLTF TRAV26-2*01 TRAJ52*01 3.0 160.0 TGTGCCAGCAGCTCCGGACAGGCCTACGAGCAGTACTTC CASSSGQAYEQYF TRBV7-8*01 TRBJ2-7*01 13.0 981.0 CILPLAGGTRYVMLTF_CASSSGQAYEQYF 1 2698 EBNA3A-193-201 EBV 0.87 1022 EBNA3A-193-201 140 2558 11 EBV EBNA3A FLRGRAYGL effector T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-B*08:01 B2M MHCI -13135 chip0516_775858 11.34 11.02 Chip4 healthy_8 healthy TGCATCCTGCCCCTTGCTGGTGGTACTAGCTATGGAAAGCTGACATTT CILPLAGGTSYGKLTF TRAV26-2*01 TRAJ52*01 63.0 4499.0 TGTGCCAGCAGCTTAGGACAGGCCTACGAGCAGTACTTC CASSLGQAYEQYF TRBV7-8*01 TRBJ2-7*01 11.0 737.0 CILPLAGGTSYGKLTF_CASSLGQAYEQYF 308 4943 EBNA3A-193-201 EBV 0.66 1022 EBNA3A-193-201 138 4805 9 EBV EBNA3A FLRGRAYGL effector memory T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-B*08:01 B2M MHCI -13136 chip0516_40143 -3.14 9.95 Chip4 healthy_9 healthy CGTGCTGTGGCCCTATATGGAAACAAGCTGGTCTTT RAVALYGNKLVF TRAV8-3*01 TRAJ47*01 21.0 2050.0 TGTGCCAGCAGCCTGGGACAGCCCTACGAGCAGTACTTC CASSLGQPYEQYF TRBV5-5*01 TRBJ2-7*01 28.0 1987.0 RAVALYGNKLVF_CASSLGQPYEQYF 1 5222 ZNT8-YAK-9 ZNT8 0.5 59 NEG 124 5098 4 HomoSapiens ZNT8 YAKWKLCSA Naive T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-B*08:01 B2M MHCI -13137 chip0516_26287 -1.89 7.73 Chip4 healthy_7 healthy TGTGCCAGCAGCTTAACGGTAGGGGGAGAGGCTTTCTTT CASSLTVGGEAFF TRBV7-3*01 TRBJ1-1*01 2.0 41.0 _CASSLTVGGEAFF 1 6853 ZNT8-115-123 ZNT8 0.93 74 ZNT8-115-123 141 6712 3 HomoSapiens ZNT8 LLSLFSLWL Naive T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*02:01 B2M MHCI -13138 chip0516_709878 11.0 13.58 Chip4 healthy_8 healthy TGCATCCTGCCCCTTGCTGATGGTACTAGCTATGGAAAGCTGACATTT CILPLADGTSYGKLTF TRAV26-2*01 TRAJ52*01 26.0 1293.0 TGTGCCAGCAGCTTAGGACAGGCCTACGAGCAGTACTTC CASSLGQAYEQYF TRBV7-8*01 TRBJ2-7*01 3.0 113.0 CILPLADGTSYGKLTF_CASSLGQAYEQYF 3 2917 EBNA3A-193-201 EBV 0.97 1022 EBNA3A-193-201 145 2772 11 EBV EBNA3A FLRGRAYGL effector T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-B*08:01 B2M MHCI -13139 chip0516_693283 -3.0 11.35 Chip4 healthy_7 healthy TGTGCAGCAAGTATCTAGGCCCTGATAGGATAGCAACTATCAGTTAATCTGG CAASI*ALat??agDSNYQLIW TRAV13-1*01 TRAJ33*01 4.0 91.0 CAASI*ALat??agDSNYQLIW_ 1 4864 PGT-178 PGT 0.72 1480 NEG 121 4743 4 HomoSapiens PGT LLAGIGTVPI Naive T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*02:01 B2M MHCI -13140 chip0516_89304 -3.24 9.51 Chip4 healthy_8 healthy TGTGCCAGCAGCCCCGAAAGGAGGTACGAGCAGTACGTC CASSPERRYEQYV TRBV6-2*01,TRBV6-3*01 TRBJ2-7*01 26.0 1654.0 _CASSPERRYEQYV 1 6267 GAD2-RMM-9 GAD65 0.6 9 NEG 122 6145 2 HomoSapiens GAD2 RMMEYGTTM Naive T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-B*08:01 B2M MHCI -13141 chip0516_47933 -3.72 10.35 Chip4 healthy_9 healthy TGTGCAGATCTCGGTTGTGGCCGCATGCTGGTCTTT CADLGCGRMLVF TRAV13-2*01 TRAJ47*01 10.0 1124.0 TGCAGCGGCGGTCCGGATAACTATGGCTACACCTTC CSGGPDNYGYTF TRBV29-1*01 TRBJ1-2*01 82.0 8416.0 CADLGCGRMLVF_CSGGPDNYGYTF 1 5073 G6PC2-YLK-8 IGRP 0.61 27 G6PC2-YLK-8 131 4942 2 HomoSapiens G6PC2 YLKTNLFL Naive T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-B*08:01 B2M MHCI -13142 chip0516_747460 5.21 10.55 Chip4 healthy_8 healthy TGTGCCAGCAGCTCCGGACAGGCCTACGAGCAGTACTTC CASSSGQAYEQYF TRBV7-8*01 TRBJ2-7*01 11.0 798.0 _CASSSGQAYEQYF 49 5381 EBNA3A-193-201 EBV 0.91 1022 EBNA3A-193-201 115 5266 6 EBV EBNA3A FLRGRAYGL central memory T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-B*08:01 B2M MHCI -13143 chip0516_82242 14.62 13.12 Chip4 healthy_8 healthy TGTGCCAGCAGCTCCGGACAGGCCTACGAGCAGTACTTC CASSSGQAYEQYF TRBV7-8*01 TRBJ2-7*01 27.0 1757.0 _CASSSGQAYEQYF 49 1533 EBNA3A-193-201 EBV 0.9 1022 EBNA3A-193-201 128 1405 12 EBV EBNA3A FLRGRAYGL effector T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-B*08:01 B2M MHCI -13144 chip0516_165760 11.0 9.9 Chip4 healthy_8 healthy TGCATCTTGGCCGTTGGTGGGGGTGCGAGCTATGGAAAGCTGACATTT CILAVGGGASYGKLTF TRAV26-2*01 TRAJ52*01 5.0 389.0 CILAVGGGASYGKLTF_ 1 5079 EBNA3A-193-201 EBV 0.76 1022 EBNA3A-193-201 134 4945 9 EBV EBNA3A FLRGRAYGL effector memory T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-B*08:01 B2M MHCI -13145 chip0516_113865 11.81 8.28 Chip4 healthy_6 healthy _ 6746 4795 EBV-LMP2A EBV 0.92 700 EBV-LMP2A 135 4660 10 EBV LMP2A CLGGLLTMV effector memory T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*02:01 B2M MHCI -13146 chip0516_571029 15.18 8.86 Chip4 healthy_9 healthy TGTGCTGTGGGTGAGGACAGACTCATGTTT CAVGEDRLMF TRAV8-3*01 TRAJ31*01 10.0 680.0 TGCGCCAGCAGCCCATCGAATGGGGCCGGTGGCTACACCTTC CASSPSNGAGGYTF TRBV4-1*01 TRBJ1-2*01 2.0 77.0 CAVGEDRLMF_CASSPSNGAGGYTF 2 3479 BZLF1-190-197 EBV 0.84 2156 BZLF1-190-197 139 3340 12 EBV BZLF1 RAKFKQLL effector T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-B*08:01 B2M MHCI -13147 chip0516_209714 10.74 11.43 Chip4 healthy_6 healthy TGTGCTGTGGCCCTCTCAAGCAAATCAACCTTT CAVALSSKSTF TRAV8-3*01 TRAJ27*01 2.0 38.0 CAVALSSKSTF_ 58 5494 EBV-LMP2A EBV 0.98 700 EBV-LMP2A 135 5359 9 EBV LMP2A CLGGLLTMV effector memory T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*02:01 B2M MHCI -13148 chip0516_83865 7.28 14.36 Chip4 healthy_6 healthy TGTGCCAGCAGTTACACCGCAAAGACAGATACTAGCAATCAGCCCCAGCATTTT CASSYTAKTDTSNQPQHF TRBV6-2*01,TRBV6-3*01 TRBJ1-5*01 1.0 11.0 _CASSYTAKTDTSNQPQHF 2 2527 M1 FLU 0.95 1250 M1 136 2391 7 InfluenzaA M1 GILGFVFTL transitional T cells between effector and memory populations PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*02:01 B2M MHCI -13149 chip0516_424905 13.23 9.16 Chip4 healthy_8 healthy TGCATCCTGCCCCTTGCCGGTGGTACTAGCTATGGAAAGCTGACATTT CILPLAGGTSYGKLTF TRAV26-2*01 TRAJ52*01 30.0 1568.0 CILPLAGGTSYGKLTF_ 55 4665 EBNA3A-193-201 EBV 0.8 1022 EBNA3A-193-201 128 4537 12 EBV EBNA3A FLRGRAYGL effector T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-B*08:01 B2M MHCI -13150 chip0516_828368 -3.15 9.15 Chip4 healthy_7 healthy TGTGCCAGCTCCCCGTTTGGTGAGGGGCGAAACACTGAAGCTTTCTTT CASSPFGEGRNTEAFF TRBV18*01 TRBJ1-1*01 5.0 260.0 _CASSPFGEGRNTEAFF 1 5614 ZNT8-115-123 ZNT8 0.8 74 NEG 122 5492 2 HomoSapiens ZNT8 LLSLFSLWL Naive T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*02:01 B2M MHCI -13151 chip0516_32313 11.05 8.11 Chip4 healthy_6 healthy TGCGCCAGCAGCGGGGACGGAATGAACACTGAAGCTTTCTTT CASSGDGMNTEAFF TRBV10-2*01 TRBJ1-1*01 30.0 1388.0 _CASSGDGMNTEAFF 131 7328 EBV-LMP2A EBV 0.93 700 EBV-LMP2A 144 7184 10 EBV LMP2A CLGGLLTMV effector memory T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*02:01 B2M MHCI -13152 chip0516_433574 -2.94 8.27 Chip4 healthy_8 healthy TGTGCTGTGAGAGTAAGTAGGACTGGAGGCTTCAAAACTATCTTT CAVRVSRTGGFKTIF TRAV1-2*01 TRAJ9*01 24.0 1127.0 CAVRVSRTGGFKTIF_ 1 8366 GFAP-LRL-8 GFAP 0.62 18 NEG 120 8246 2 HomoSapiens GFAP LRLRLDQL Naive T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-B*08:01 B2M MHCI -13153 chip0516_676476 -1.29 10.94 Chip4 healthy_8 healthy TGTGCAATGAGGGTATACGGAGGCTTCCAAACTATCTTT CAMRVYGGFQTIF TRAV12-3*01 TRAJ9*01 19.0 894.0 CAMRVYGGFQTIF_ 1 6721 PTPRN-HAR-8 PTPRN 0.75 13 NEG 142 6579 3 HomoSapiens PTPRN HARIKLKV Naive T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-B*08:01 B2M MHCI -13154 chip0516_456990 4.98 10.71 Chip4 healthy_6 healthy TGTGCTACGGAAGGGGCTTCAGGATACAGCACCCTCACCTTT CATEGASGYSTLTF TRAV17*01 TRAJ11*01 2.0 31.0 CATEGASGYSTLTF_ 8 4690 EBV-LMP2-FLY EBV 0.94 355 EBV-LMP2-FLY 122 4568 6 EBV LMP2 FLYALALLL central memory T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*02:01 B2M MHCI -13155 chip0516_79154 10.82 10.51 Chip4 healthy_8 healthy TGCATCCTGCCCCTTGCTGGTGGTACTCGCTCTGGCACGCTGCCCTTT CILPLAGGTRSGTLPF TRAV26-2*01 TRAJ52*01 6.0 249.0 CILPLAGGTRSGTLPF_ 1 8198 EBNA3A-193-201 EBV 0.92 1022 EBNA3A-193-201 148 8050 9 EBV EBNA3A FLRGRAYGL effector memory T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-B*08:01 B2M MHCI -13156 chip0516_316635 -2.92 9.52 Chip4 healthy_8 healthy TGTGCTGTGAGTCCAAATAATGCAGGCAACATGCTCACCTTT CAVSPNNAGNMLTF TRAV21*01 TRAJ39*01 13.0 909.0 CAVSPNNAGNMLTF_ 1 7677 ZNT8-YAY-8 ZNT8 0.94 54 ZNT8-YAY-8 131 7546 2 HomoSapiens ZNT8 YAYAKWKL Naive T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-B*08:01 B2M MHCI -13157 chip0516_338762 6.43 10.38 Chip4 healthy_8 healthy TGCATCCTGCCCCTTGCTGGTGGTACTAGCTATGGAAAGCTGACATTT CILPLAGGTSYGKLTF TRAV26-2*01 TRAJ52*01 41.0 2271.0 TGTGCCAGCAGCTTAGGACAGGCCTACGAGCAGTACTTC CASSLGQAYEQYF TRBV7-8*01 TRBJ2-7*01 29.0 2061.0 CILPLAGGTSYGKLTF_CASSLGQAYEQYF 308 7463 EBNA3A-193-201 EBV 0.94 1022 EBNA3A-193-201 149 7314 6 EBV EBNA3A FLRGRAYGL central memory T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-B*08:01 B2M MHCI -13158 chip0516_254694 12.22 7.07 Chip4 healthy_8 healthy TGTGCCAGCAGCTTAGGACAGGCCTACGAGCAGTACTTC CASSLGQAYEQYF TRBV7-8*01 TRBJ2-7*01 14.0 846.0 _CASSLGQAYEQYF 175 5362 EBNA3A-193-201 EBV 0.65 1022 EBNA3A-193-201 141 5221 10 EBV EBNA3A FLRGRAYGL effector memory T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-B*08:01 B2M MHCI -13159 chip0516_120577 9.48 8.98 Chip4 healthy_8 healthy TGTGCAGCAACCTTTTATGGAGGAAGCCAAGGAAATCTCATCTTT CAATFYGGSQGNLIF TRAV29/DV5*01 TRAJ42*01 22.0 1653.0 TGCGCCAGCAGCACCCAGACAGCGCCTGATGATACGCAGTATTTT CASSTQTAPDDTQYF TRBV7-9*01 TRBJ2-3*01 2.0 21.0 CAATFYGGSQGNLIF_CASSTQTAPDDTQYF 3 6782 BZLF1-190-197 EBV 0.91 2156 BZLF1-190-197 124 6658 8 EBV BZLF1 RAKFKQLL effector memory T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-B*08:01 B2M MHCI -13160 chip0516_618480 7.35 11.91 Chip4 healthy_9 healthy TGTGCCAGCAGCCTAGTTCAGCGGACCGGGGAGCTGTTTTTT CASSLVQRTGELFF TRBV7-8*01 TRBJ2-2*01 6.0 343.0 _CASSLVQRTGELFF 1 5279 LMP2A-CPL EBV 0.97 44 LMP2A-CPL 137 5142 7 EBV LMP2A CPLSKILL transitional T cells between effector and memory populations PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-B*08:01 B2M MHCI -13161 chip0516_281638 11.24 12.55 Chip4 healthy_6 healthy _ 6746 3381 EBV-LMP2A EBV 0.94 700 EBV-LMP2A 106 3275 11 EBV LMP2A CLGGLLTMV effector T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*02:01 B2M MHCI -13162 chip0516_461121 10.58 10.99 Chip4 healthy_8 healthy TGTGCCAGCAGCACCCAGACAGCGCCTGATGATACGCAGTATTTT CASSTQTAPDDTQYF TRBV7-9*01 TRBJ2-3*01 4.0 219.0 _CASSTQTAPDDTQYF 5 3955 BZLF1-190-197 EBV 0.9 2156 BZLF1-190-197 148 3807 9 EBV BZLF1 RAKFKQLL effector memory T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-B*08:01 B2M MHCI -13163 chip0516_118015 11.46 7.24 Chip4 healthy_8 healthy TGCATCCTGCCCCTTGCTGGTGGTACTAGCTATGGAAAACTGACATTT CILPLAGGTSYGKLTF TRAV26-2*01 TRAJ52*01 2.0 60.0 TGTGCCAGCAGCTTAGGACAGGCCTACGAGCAGTACTTC CASSLGQAYEQYF TRBV7-8*01 TRBJ2-7*01 21.0 965.0 CILPLAGGTSYGKLTF_CASSLGQAYEQYF 308 6096 EBNA3A-193-201 EBV 0.7 1022 EBNA3A-193-201 136 5960 10 EBV EBNA3A FLRGRAYGL effector memory T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-B*08:01 B2M MHCI -13164 chip0516_8756 9.23 11.52 Chip4 healthy_8 healthy TGCGCCAGCAGCCTGGGCGGAACCAATGAGCAGTTCTTC CASSLGGTNEQFF TRBV4-1*01 TRBJ2-1*01 12.0 897.0 _CASSLGGTNEQFF 1 5185 BZLF1-190-197 EBV 0.66 2156 BZLF1-190-197 165 5020 7 EBV BZLF1 RAKFKQLL transitional T cells between effector and memory populations PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-B*08:01 B2M MHCI -13165 chip0516_337786 5.76 12.26 Chip4 healthy_8 healthy TGCATCCTGCCCCTTGCTGGTGGTACTAGCTATGGAAAGCTGACATTT CILPLAGGTSYGKLTF TRAV26-2*01 TRAJ52*01 12.0 884.0 CILPLAGGTSYGKLTF_ 55 6258 EBNA3A-193-201 EBV 0.91 1022 EBNA3A-193-201 139 6119 7 EBV EBNA3A FLRGRAYGL transitional T cells between effector and memory populations PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-B*08:01 B2M MHCI -13166 chip0516_203024 10.63 8.75 Chip4 healthy_8 healthy TGTGCCGTGAAGACGGACACCAATGCAGGCAAATCAACCTTT CAVKTDTNAGKSTF TRAV12-2*01 TRAJ27*01 34.0 2284.0 CAVKTDTNAGKSTF_ 20 6770 EBNA3A-193-201 EBV 0.82 1022 EBNA3A-193-201 159 6611 10 EBV EBNA3A FLRGRAYGL effector memory T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-B*08:01 B2M MHCI -13167 chip0516_702195 11.5 6.81 Chip4 healthy_6 healthy TGTGCCGTGATCAGAATACTGGAGGCTTCAAAACTATCTTT CAVIRIct?GGFKTIF TRAV8-1*01 TRAJ9*01 27.0 1468.0 CAVIRIct?GGFKTIF_ 1 5876 EBV-LMP2-FLY EBV 0.95 355 EBV-LMP2-FLY 143 5733 10 EBV LMP2 FLYALALLL effector memory T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*02:01 B2M MHCI -13168 chip0516_556491 -2.95 8.89 Chip4 healthy_8 healthy TGTGCAGCAAGGCTGGGAGCCCAGAAGCTGGTATTT CAARLGAQKLVF TRAV29/DV5*01 TRAJ54*01 1.0 31.0 TGTGCCAGCAGCCCCCAGGCTAGCGGGGGGTGGAATGAGCAGTTCTTC CASSPQASGGWNEQFF TRBV13*01 TRBJ2-1*01 20.0 1381.0 CAARLGAQKLVF_CASSPQASGGWNEQFF 1 6078 ZNT8-VTD-9 ZNT8 0.91 65 ZNT8-VTD-9 131 5947 2 HomoSapiens ZNT8 VTDAAHLLI Naive T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*01:01 B2M MHCI -13169 chip0516_359394 6.32 10.01 Chip4 healthy_8 healthy TGCATCCTGCCCCTTGCTGGTGGTACTAGCTATGGAAAGCTGACATTT CILPLAGGTSYGKLTF TRAV26-2*01 TRAJ52*01 112.0 4274.0 TGTGCCAGCAGCTTAGGACAGGCCTACGAGCCGTACTTC CASSLGQAYEPYF TRBV7-8*01 TRBJ2-7*01 11.0 762.0 CILPLAGGTSYGKLTF_CASSLGQAYEPYF 1 7261 EBNA3A-193-201 EBV 0.97 1022 EBNA3A-193-201 145 7116 6 EBV EBNA3A FLRGRAYGL central memory T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-B*08:01 B2M MHCI -13170 chip0516_55677 -0.75 10.67 Chip4 healthy_7 healthy TGTGCCAGCAGCCAAGAACTAGCGGGAAACTCCTACAATGAGCAGTTCTTC CASSQELAGNSYNEQFF TRBV3-1*01 TRBJ2-1*01 19.0 634.0 _CASSQELAGNSYNEQFF 1 5253 PGT-178 PGT 0.95 1480 PGT-178 115 5138 3 HomoSapiens PGT LLAGIGTVPI Naive T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*02:01 B2M MHCI -13171 chip0516_815677 -2.95 8.0 Chip4 healthy_6 healthy TGTGCCGTGAACGAGGGAGAAGGTGCTGACGGACTCACCTTT CAVNEGEGADGLTF TRAV12-2*01 TRAJ45*01 7.0 393.0 TGTGCCAGCAGTTCCACTGCATTTGCTGGAAACACCATATATTTT CASSSTAFAGNTIYF TRBV6-5*01 TRBJ1-3*01 27.0 1386.0 CAVNEGEGADGLTF_CASSSTAFAGNTIYF 1 7199 MART1-ALA MART1 0.87 269 NEG 122 7077 2 HomoSapiens MART1 ALAGIGILTV Naive T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*02:01 B2M MHCI -13172 chip0516_678019 -4.08 10.04 Chip4 healthy_7 healthy TGCGCCAGCAGCCCCAGTCCCGGGACAGGGGCGGGAGAAAAACTGTTTTTT CASSPSPGTGAGEKLFF TRBV4-3*01 TRBJ1-4*01 11.0 430.0 _CASSPSPGTGAGEKLFF 1 4763 ROTA-VP2-1 ROTA 0.85 17 NEG 130 4633 4 RotavirusA VP2 SLISGMWLL Naive T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*02:01 B2M MHCI -13173 chip0516_624093 11.61 8.18 Chip4 healthy_6 healthy _ 6746 4892 EBV-LMP2A EBV 0.83 700 EBV-LMP2A 128 4764 10 EBV LMP2A CLGGLLTMV effector memory T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*02:01 B2M MHCI -13174 chip0516_425451 14.58 9.11 Chip4 healthy_6 healthy _ 6746 4471 EBV-BLMF1 EBV 0.79 2531 NEG 144 4327 12 EBV BLMF1 GLCTLVAML effector T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*02:01 B2M MHCI -13175 chip0516_167398 9.57 9.0 Chip4 healthy_6 healthy TGCGCCAGCAGCGGGGACGGAATGAACACTGAAGCTTTCTTT CASSGDGMNTEAFF TRBV10-2*01 TRBJ1-1*01 27.0 1734.0 _CASSGDGMNTEAFF 131 9006 EBV-LMP2A EBV 0.91 700 EBV-LMP2A 148 8858 8 EBV LMP2A CLGGLLTMV effector memory T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*02:01 B2M MHCI -13176 chip0516_806579 11.98 6.63 Chip4 healthy_6 healthy TGCGCCAGCAGCGGGGACGGAATGAACACTGAAGCTTTCTTT CASSGDGMNTEAFF TRBV10-2*01 TRBJ1-1*01 61.0 2884.0 _CASSGDGMNTEAFF 131 5928 EBV-LMP2A EBV 1.0 700 NEG 135 5793 10 EBV LMP2A CLGGLLTMV effector memory T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*02:01 B2M MHCI -13177 chip0516_16153 -2.66 8.9 Chip4 healthy_6 healthy TGTGCTACGGAACTTGGGGCAAACAACCTCTTCTTT CATELGANNLFF TRAV17*01 TRAJ36*01 9.0 583.0 TGTGCCAGCACCCCTTTCATCCGGGCCGCGGTTGATGAGCAGTTCTTC CASTPFIRAAVDEQFF TRBV6-1*01 TRBJ2-1*01 12.0 628.0 CATELGANNLFF_CASTPFIRAAVDEQFF 1 7157 HCVNS4B-1807-1816 HCV 0.92 74 NEG 136 7021 3 HCV NS4B LLFNILGGWV Naive T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*02:01 B2M MHCI -13178 chip0516_576285 10.67 10.2 Chip4 healthy_6 healthy TGTGCTGTGGCCCTCTCAAGCAAATCAACCTTT CAVALSSKSTF TRAV8-3*01 TRAJ27*01 14.0 1214.0 CAVALSSKSTF_ 58 7112 EBV-LMP2A EBV 0.78 700 EBV-LMP2A 128 6984 9 EBV LMP2A CLGGLLTMV effector memory T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*02:01 B2M MHCI -13179 chip0516_198133 5.58 10.1 Chip4 healthy_6 healthy TGTGGAGCAGACGGGAAGTGGAGGTAGCAACTCTACACTGACCTTT CGADGKWag??gtSNSTLTF TRAV34*01 TRAJ53*01 22.0 1025.0 CGADGKWag??gtSNSTLTF_ 1 7615 EBV-LMP1-1 EBV 0.97 237 EBV-LMP1-1 135 7480 6 EBV LMP1 YLLEMLWRL central memory T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*02:01 B2M MHCI -13180 chip0516_328818 5.97 12.4 Chip4 healthy_6 healthy TGTGTGGTGAACTCACCCTCAGGAACCTACAAATACATCTTT CVVNSPSGTYKYIF TRAV12-1*01 TRAJ40*01 38.0 1867.0 CVVNSPSGTYKYIF_ 1 7152 M1 FLU 0.55 1250 NEG 123 7029 7 InfluenzaA M1 GILGFVFTL transitional T cells between effector and memory populations PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*02:01 B2M MHCI -13181 chip0516_164288 -0.87 7.27 Chip4 healthy_7 healthy AGTGTCACGTAATGCGGGTGGTCCTAGCTTTGGAACTCTGACCTTT SVT*CGWtc??ctSFGTLTF TRAV35*01 TRAJ52*01 41.0 1918.0 TGTGCCAGCAGCTTAAGTTTTAGGGGAGGCTCGGATAATTCACCCCTCCACTTT CASSLSFRGGSDNSPLHF TRBV7-6*01 TRBJ1-6*01 27.0 903.0 SVT*CGWtc??ctSFGTLTF_CASSLSFRGGSDNSPLHF 1 6906 PA-46-54 FLU 0.94 18 PA-46-54 145 6761 3 InfluenzaA PA FMYSDFHFI Naive T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*02:01 B2M MHCI -13182 chip0516_746677 10.14 13.95 Chip4 healthy_8 healthy TGTGCAGAGAAACCATCTTATAACACCGACAAGCTCATCTTT CAEKPSYNTDKLIF TRAV13-2*01 TRAJ34*01 34.0 2239.0 TGTGCCAGTCAGGGTTTTGGTAACACTGAAGCTTTCTTT CASQGFGNTEAFF TRBV9*01 TRBJ1-1*01 26.0 1977.0 CAEKPSYNTDKLIF_CASQGFGNTEAFF 1 1752 NP30-38 FLU 0.67 72 NP30-38 120 1632 11 InfluenzaA NP RPIIRPATL effector T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-B*08:01 B2M MHCI -13183 chip0516_181419 8.54 9.99 Chip4 healthy_8 healthy TGTGCCTTCTCGAACTCAAATTCCGGGTATGCACTCAACTTC CAFSNSNSGYALNF TRAV12-2*01 TRAJ41*01 1.0 30.0 TGCGCCAGCAGCTTCGGTTTGGGGGAGAACACTGAAGCTTTCTTT CASSFGLGENTEAFF TRBV5-1*01 TRBJ1-1*01 20.0 1006.0 CAFSNSNSGYALNF_CASSFGLGENTEAFF 1 7699 BZLF1-190-197 EBV 0.92 2156 BZLF1-190-197 132 7567 8 EBV BZLF1 RAKFKQLL effector memory T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-B*08:01 B2M MHCI -13184 chip0516_19004 5.21 9.63 Chip4 healthy_7 healthy TGTGCCGTGAACATGCGATCCCCCAGTCACCCGTTCTCTTTT CAVNMRSPSHPFSF TRAV12-2*01 TRAJ49*01 8.0 353.0 TGTGCCAGCAGCTTCTACGAGCAGTACTTC CASSFYEQYF TRBV28*01 TRBJ2-7*01 41.0 4643.0 CAVNMRSPSHPFSF_CASSFYEQYF 1 5423 EBV-LMP1-2 EBV 0.73 41 EBV-LMP1-2 119 5304 6 EBV LMP1 YLQQNWWTL central memory T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*02:01 B2M MHCI -13185 chip0516_434572 -4.95 9.33 Chip4 healthy_7 healthy TGTGCCAGCAGCTCCGAGGTCGGCGTGGGTGAGCAGTTCTTC CASSSEVGVGEQFF TRBV7-9*01 TRBJ2-1*01 83.0 6908.0 _CASSSEVGVGEQFF 1 4754 HCVNS3-1406-1415 HCV 0.53 12 NEG 111 4643 2 HCV NS3 KLVALGINAV Naive T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*02:01 B2M MHCI -13186 chip0516_4497 10.86 6.62 Chip4 healthy_6 healthy TGTGCTGTTCTAATGGATAGCAACTATCAGTTAATCTGG CAVLMDSNYQLIW TRAV12-3*01 TRAJ33*01 20.0 1768.0 TGCGCCAGCAGCGGGGACGGTATGGACACTGAAGCTTTCTTT CASSGDGMDTEAFF TRBV10-2*01 TRBJ1-1*01 2.0 23.0 CAVLMDSNYQLIW_CASSGDGMDTEAFF 1 8133 EBV-LMP2A EBV 0.96 700 EBV-LMP2A 136 7997 10 EBV LMP2A CLGGLLTMV effector memory T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*02:01 B2M MHCI -13187 chip0516_554361 10.31 9.01 Chip4 healthy_6 healthy TGCGCCAGCAGCGGGGACGGAATGAACACTGAAGCTTTCTTT CASSGDGMNTEAFF TRBV10-2*01 TRBJ1-1*01 17.0 1102.0 _CASSGDGMNTEAFF 131 6554 EBV-LMP2A EBV 0.84 700 EBV-LMP2A 124 6430 10 EBV LMP2A CLGGLLTMV effector memory T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*02:01 B2M MHCI -13188 chip0516_784016 5.79 10.86 Chip4 healthy_8 healthy TGCATCCTGCCCCTTGCTGGTGGTACTAGCTATGGAAAGCTGACATTT CILPLAGGTSYGKLTF TRAV26-2*01 TRAJ52*01 42.0 2178.0 TGTGCCAGCAGCTTAGGACAGGCCTACGAGCAGTACTTC CASSLGQAYEQYF TRBV7-8*01 TRBJ2-7*01 9.0 882.0 CILPLAGGTSYGKLTF_CASSLGQAYEQYF 308 8766 EBNA3A-193-201 EBV 0.97 1022 EBNA3A-193-201 115 8651 6 EBV EBNA3A FLRGRAYGL central memory T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-B*08:01 B2M MHCI -13189 chip0516_298700 11.19 7.92 Chip4 healthy_8 healthy TGCATCCTGCCCCTTGCTGGTGGTACTAGCTATGGAAAGCTGACATTT CILPLAGGTSYGKLTF TRAV26-2*01 TRAJ52*01 46.0 2439.0 TGTGCCAGCAGCTTAGGACAGGCCTACGAGCAGTACTTC CASSLGQAYEQYF TRBV7-8*01 TRBJ2-7*01 45.0 2676.0 CILPLAGGTSYGKLTF_CASSLGQAYEQYF 308 5915 EBNA3A-193-201 EBV 0.71 1022 EBNA3A-193-201 147 5768 10 EBV EBNA3A FLRGRAYGL effector memory T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-B*08:01 B2M MHCI -13190 chip0516_162184 11.24 6.9 Chip4 healthy_6 healthy TGTGCCAGCAGTCAACAGGGGGGTAACTATGGCTACACCTTC CASSQQGGNYGYTF TRBV6-1*01 TRBJ1-2*01 2.0 50.0 _CASSQQGGNYGYTF 5 5185 EBV-LMP2-FLY EBV 0.88 355 EBV-LMP2-FLY 141 5044 10 EBV LMP2 FLYALALLL effector memory T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*02:01 B2M MHCI -13191 chip0516_712032 5.71 12.19 Chip4 healthy_6 healthy TGTGCCGTGAACGGAGGGGAACGCAGTGGAGGTAGCAACTATAAACTGACATTT CAVNGGERSGGSNYKLTF TRAV12-2*01 TRAJ53*01 26.0 722.0 CAVNGGERSGGSNYKLTF_ 1 5796 EBV-LMP1-1 EBV 0.95 237 EBV-LMP1-1 138 5658 7 EBV LMP1 YLLEMLWRL transitional T cells between effector and memory populations PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*02:01 B2M MHCI -13192 chip0516_317641 10.97 8.96 Chip4 healthy_8 healthy _ 6746 5531 EBNA3A-193-201 EBV 0.9 1022 EBNA3A-193-201 137 5394 10 EBV EBNA3A FLRGRAYGL effector memory T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-B*08:01 B2M MHCI -13193 chip0516_220334 0.56 8.69 Chip4 healthy_9 healthy TGTGCAATGAGCGCGTATTTATATGGAAACAAGCTGGTCTTT CAMSAYLYGNKLVF TRAV12-3*01 TRAJ47*01 1.0 24.0 TGTGCCAGCAGCTCCTCTAGCGGAGCCAAAAACATTCAGTACTTC CASSSSSGAKNIQYF TRBV7-2*01 TRBJ2-4*01 19.0 897.0 CAMSAYLYGNKLVF_CASSSSSGAKNIQYF 1 6809 NP225-233 FLU 0.72 23 NP225-233 127 6682 4 InfluenzaA NP ILKGKFQTA Naive T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-B*08:01 B2M MHCI -13194 chip0516_565722 5.74 12.02 Chip4 healthy_8 healthy TGTGCAATGAGAGATTCTACGGGAGGTAGCAACTATAAACTGACATTT CAMRDSTGGSNYKLTF TRAV14/DV4*01 TRAJ53*01 35.0 1269.0 TGTGCCAGTTCCTCCGTCCCAGATATGAACACTGAAGCTTTCTTT CASSSVPDMNTEAFF TRBV19*01 TRBJ1-1*01 11.0 515.0 CAMRDSTGGSNYKLTF_CASSSVPDMNTEAFF 5 5606 NP30-38 FLU 0.7 72 NP30-38 142 5464 7 InfluenzaA NP RPIIRPATL transitional T cells between effector and memory populations PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-B*08:01 B2M MHCI -13195 chip0516_689169 10.72 8.81 Chip4 healthy_8 healthy TGTGCTGTGACCCTTACCCTCTACTCTGGGGCTGGGAGTTACCAACTCACTTTC CAVTLTLYSGAGSYQLTF TRAV21*01 TRAJ28*01 72.0 3950.0 TGTGCCAGCAGTTTAATGGGGACAGGGGGCTTGAGTGAAAAACTGTTTTTT CASSLMGTGGLSEKLFF TRBV28*01 TRBJ1-4*01 18.0 686.0 CAVTLTLYSGAGSYQLTF_CASSLMGTGGLSEKLFF 19 6062 EBNA3A-158-166 EBV 0.55 444 EBNA3A-158-166 140 5922 10 EBV EBNA3A QAKWRLQTL effector memory T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-B*08:01 B2M MHCI -13196 chip0516_354907 -1.57 7.74 Chip4 healthy_8 healthy TGTGTTGTGAGTGATCTTATCTCAGGAGGAGGTGCTGACGGACTCACCTTT CVVSDLISGGGADGLTF TRAV8-2*01 TRAJ45*01 232.0 7787.0 TGCGCCAGCAGCTTGGTCCCTAGCGGGGATAGACCCTACAATGAGCAGTTCTTC CASSLVPSGDRPYNEQFF TRBV5-1*01 TRBJ2-1*01 23.0 1514.0 CVVSDLISGGGADGLTF_CASSLVPSGDRPYNEQFF 1 8141 INS-LWM-8 INS 0.83 11 INS-LWM-8 121 8020 3 HomoSapiens INS LWMRLLPL Naive T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-B*08:01 B2M MHCI -13197 chip0516_242557 -2.3 9.25 Chip4 healthy_9 healthy _ 6746 7246 GAD2-EAK-10 GAD65 0.65 14 GAD2-EAK-10 121 7125 3 HomoSapiens GAD2 EAKQKGFVPF Naive T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-B*08:01 B2M MHCI -13198 chip0516_67781 -3.8 8.45 Chip4 healthy_7 healthy TGTGCCGTGGGGCAGGAGAAAGTTACCTTT CAVGQEKVTF TRAV12-2*01 TRAJ13*01 3.0 154.0 TGTGCCAGCAGGACAGTCTCCTACGAGCAGTACTTC CASRTVSYEQYF TRBV27*01 TRBJ2-7*01 28.0 2838.0 CAVGQEKVTF_CASRTVSYEQYF 1 5173 MART1-ALA MART1 0.43 269 NEG 125 5048 2 HomoSapiens MART1 ALAGIGILTV Naive T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*02:01 B2M MHCI -13199 chip0516_663844 -2.31 15.58 Chip4 healthy_7 healthy _ 6746 2075 GAG-77-86 HIV 0.67 15 NEG 114 1961 1 HIV-1 GAG SLYNTVATLY Naive T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*02:01 B2M MHCI -13200 chip0516_273249 -1.0 8.74 Chip4 healthy_8 healthy TGTGCAATGAGAGAGGGCCTTGGGGGAAAGCTTATCTTC CAMREGLGGKLIF TRAV14/DV4*01 TRAJ23*01 18.0 1598.0 TGTGCCAGCAGCCCTGGGACAGCCGTGAACACTGAAGCTTTCTTT CASSPGTAVNTEAFF TRBV7-6*01 TRBJ1-1*01 17.0 641.0 CAMREGLGGKLIF_CASSPGTAVNTEAFF 1 7939 NP225-233 FLU 0.76 23 NP225-233 164 7775 3 InfluenzaA NP ILKGKFQTA Naive T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-B*08:01 B2M MHCI -13201 chip0516_248259 14.11 7.83 Chip4 healthy_8 healthy TGTGCCGTGAAGACGGACACCAATGCAGGCAAATCAACCTTT CAVKTDTNAGKSTF TRAV12-2*01 TRAJ27*01 68.0 3253.0 TGTGCCAGCAGTGACTCGATAGGGTTTAATTCACCCCTCCACTTT CASSDSIGFNSPLHF TRBV6-4*01 TRBJ1-6*01 16.0 1041.0 CAVKTDTNAGKSTF_CASSDSIGFNSPLHF 3 4338 EBNA3A-193-201 EBV 1.0 1022 EBNA3A-193-201 154 4184 10 EBV EBNA3A FLRGRAYGL effector memory T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-B*08:01 B2M MHCI -13202 chip0516_356012 5.37 9.26 Chip4 healthy_7 healthy TGTGCCAGCAGTGCACAGGGGGGTAACTATGGCTACACCTTC CASSAQGGNYGYTF TRBV6-1*01 TRBJ1-2*01 14.0 1227.0 _CASSAQGGNYGYTF 1 6374 EBV-LMP2-FLY EBV 0.75 355 NEG 139 6235 6 EBV LMP2 FLYALALLL central memory T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*02:01 B2M MHCI -13203 chip0516_647930 13.23 6.65 Chip4 healthy_6 healthy TGTGCCTCCGGCACTGCCAGTAAACTCACCTTT CASGTASKLTF TRAV8-1*01 TRAJ44*01 13.0 1841.0 TGTGCCAGCAGCTTAGATCTACTGGGGTCGGCGATAACCCAGTACTTC CASSLDLLGSAITQYF TRBV11-2*01 TRBJ2-5*01 13.0 670.0 CASGTASKLTF_CASSLDLLGSAITQYF 1 4477 EBV-BRLF1 EBV 0.91 1264 EBV-BRLF1 141 4336 10 EBV BRLF1 YVLDHLIVV effector memory T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*02:01 B2M MHCI -13204 chip0516_450347 -4.24 8.14 Chip4 healthy_8 healthy TGTGCAGCAAAAGGGAACACCGACAAGCTCATCTTT CAAKGNTDKLIF TRAV13-1*01 TRAJ34*01 10.0 606.0 TGTGCCAGCAGCTTTAGCGGGGCCATTCTTCAAGAGACCCAGTACTTC CASSFSGAILQETQYF TRBV7-9*01 TRBJ2-5*01 4.0 223.0 CAAKGNTDKLIF_CASSFSGAILQETQYF 1 5524 GAD2-HPR-8 GAD65 0.73 9 GAD2-HPR-8 105 5419 2 HomoSapiens GAD2 HPRYFNQL Naive T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-B*08:01 B2M MHCI -13205 chip0516_137617 -0.7 8.88 Chip4 healthy_9 healthy TGCAGCGTGGAGGGACCAAGGGGGCAGTTCTTC CSVEGPRGQFF TRBV29-1*01 TRBJ2-1*01 154.0 17214.0 _CSVEGPRGQFF 1 5758 NP30-38 FLU 0.6 72 NP30-38 123 5635 4 InfluenzaA NP RPIIRPATL Naive T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-B*08:01 B2M MHCI -13206 chip0516_496603 -3.34 13.72 Chip4 healthy_8 healthy TGCATCCTTTCGGAAACCTCCTACGACAAGGTGATATTT CILSETSYDKVIF TRAV26-2*01 TRAJ50*01 22.0 2019.0 CILSETSYDKVIF_ 1 3962 BZLF1-190-197 EBV 0.71 2156 NEG 106 3856 1 EBV BZLF1 RAKFKQLL Naive T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-B*08:01 B2M MHCI -13207 chip0516_607804 10.6 11.29 Chip4 healthy_6 healthy TGTGCTGTGGCCCTCTCAAGCAAATCAACCTTT CAVALSSKSTF TRAV8-3*01 TRAJ27*01 14.0 723.0 TGCGCCAGCAGCGGGGACGGAATGAACACTGAAGCTTTCTTT CASSGDGMNTEAFF TRBV10-2*01 TRBJ1-1*01 14.0 1119.0 CAVALSSKSTF_CASSGDGMNTEAFF 50 4602 EBV-LMP2A EBV 0.94 700 EBV-LMP2A 132 4470 9 EBV LMP2A CLGGLLTMV effector memory T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*02:01 B2M MHCI -13208 chip0516_504911 15.81 11.59 Chip4 healthy_8 healthy TGCATCCTGCCCCTTGCTGGTGGTACTAGCTATGGAAAGCTGACATTT CILPLAGGTSYGKLTF TRAV26-2*01 TRAJ52*01 8.0 566.0 TGTGCCAGCAGCTTAGGACAGGCCTACGAGCAGTACTTC CASSLGQAYEQYF TRBV7-8*01 TRBJ2-7*01 25.0 1392.0 CILPLAGGTSYGKLTF_CASSLGQAYEQYF 308 3208 EBNA3A-193-201 EBV 0.86 1022 EBNA3A-193-201 152 3056 12 EBV EBNA3A FLRGRAYGL effector T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-B*08:01 B2M MHCI -13209 chip0516_439008 10.32 10.09 Chip4 healthy_8 healthy TGCATCCTGCCCCTTGCTGGTGGTACTAGCTATGGAAAGCTGACATTT CILPLAGGTSYGKLTF TRAV26-2*01 TRAJ52*01 18.0 882.0 CILPLAGGTSYGKLTF_ 55 6476 EBNA3A-193-201 EBV 0.89 1022 EBNA3A-193-201 141 6335 9 EBV EBNA3A FLRGRAYGL effector memory T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-B*08:01 B2M MHCI -13210 chip0516_423828 5.7 13.31 Chip4 healthy_6 healthy _ 6746 7123 M1 FLU 0.84 1250 M1 122 7001 7 InfluenzaA M1 GILGFVFTL transitional T cells between effector and memory populations PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*02:01 B2M MHCI -13211 chip0516_623387 5.64 12.13 Chip4 healthy_8 healthy _ 6746 5825 NP30-38 FLU 0.81 72 NP30-38 115 5710 7 InfluenzaA NP RPIIRPATL transitional T cells between effector and memory populations PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-B*08:01 B2M MHCI -13212 chip0516_807270 4.94 9.89 Chip4 healthy_8 healthy TGCATCCTGCCCCTTGCTGGTGGTACTAGCTATGGAAAGCTGACATTT CILPLAGGTSYGKLTF TRAV26-2*01 TRAJ52*01 18.0 879.0 TGTGCCAGCAGCTTAGGACAGGCCTACGAGCAGTACTTC CASSLGQAYEQYF TRBV7-8*01 TRBJ2-7*01 1.0 49.0 CILPLAGGTSYGKLTF_CASSLGQAYEQYF 308 5495 EBNA3A-193-201 EBV 0.96 1022 EBNA3A-193-201 146 5349 6 EBV EBNA3A FLRGRAYGL central memory T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-B*08:01 B2M MHCI -13213 chip0516_454761 12.08 7.21 Chip4 healthy_8 healthy TGTGCCAGCAGCTTAGGACAGGCCTACGAGCAGTACTTC CASSLGQAYEQYF TRBV7-8*01 TRBJ2-7*01 30.0 1720.0 _CASSLGQAYEQYF 175 4425 EBNA3A-193-201 EBV 0.97 1022 EBNA3A-193-201 141 4284 10 EBV EBNA3A FLRGRAYGL effector memory T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-B*08:01 B2M MHCI -13214 chip0516_184643 15.27 8.79 Chip4 healthy_8 healthy TGCATCCTGCCCCTTGCTGGTGGTACTAGCTACGGAAAGCTGACATTT CILPLAGGTSYGKLTF TRAV26-2*01 TRAJ52*01 26.0 1723.0 TGTGCCAGCAGCTTAGGACAGGCCTACGAGCAGTACTTC CASSLGQAYEQYF TRBV7-8*01 TRBJ2-7*01 70.0 4276.0 CILPLAGGTSYGKLTF_CASSLGQAYEQYF 308 3953 EBNA3A-193-201 EBV 0.73 1022 EBNA3A-193-201 137 3816 12 EBV EBNA3A FLRGRAYGL effector T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-B*08:01 B2M MHCI -13215 chip0516_764325 14.6 12.61 Chip4 tet_neg TGTGCCAGTTCAGCGGGGGCCAACTCCTACAATGAGCAGTTCTTC CASSAGANSYNEQFF TRBV3-1*01 TRBJ2-1*01 24.0 2052.0 _CASSAGANSYNEQFF 1 2905 NP140-148 FLU 0.55 102 NEG 113 2792 12 InfluenzaA NP HSNLNDATY effector T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*01:01 B2M MHCI -13216 chip0516_733811 -2.58 8.54 Chip4 healthy_8 healthy TGTGCAATGAGAGGGCAAACTGGGGCAAACAACCTCTTCTTT CAMRGQTGANNLFF TRAV14/DV4*01 TRAJ36*01 32.0 2002.0 CAMRGQTGANNLFF_ 1 7226 NP380-388 FLU 0.42 60 NP380-388 115 7111 2 InfluenzaA NP ELRSRYWAI Naive T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-B*08:01 B2M MHCI -13217 chip0516_606813 5.97 13.16 Chip4 healthy_7 healthy TGTGCAGGAGCCCTTGGCTCTAGCAACACAGGCAAACTAACCTTT CAGALGSSNTGKLTF TRAV27*01 TRAJ37*01 5.0 144.0 TGTGCCAGTAGTATTCGGAGCTCCTACGAGCAGTACTTC CASSIRSSYEQYF TRBV19*01 TRBJ2-7*01 4.0 330.0 CAGALGSSNTGKLTF_CASSIRSSYEQYF 1 6340 M1 FLU 0.91 1250 M1 117 6223 7 InfluenzaA M1 GILGFVFTL transitional T cells between effector and memory populations PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*02:01 B2M MHCI -13218 chip0516_291213 5.94 11.36 Chip4 healthy_6 healthy TGTGCTGTTTAGAACAGAGATGACAAGCTCATCTTT CAV*NRDDKLIF TRAV1-2*01 TRAJ30*01 4.0 154.0 CAV*NRDDKLIF_ 1 5737 MART1-ALA MART1 0.8 269 NEG 124 5613 6 HomoSapiens MART1 ALAGIGILTV central memory T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*02:01 B2M MHCI -13219 chip0516_121946 -2.04 7.31 Chip4 healthy_9 healthy _ 6746 4511 EBNA3A-158-166 EBV 0.82 444 EBNA3A-158-166 106 4405 4 EBV EBNA3A QAKWRLQTL Naive T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-B*08:01 B2M MHCI -13220 chip0516_188794 12.81 7.29 Chip4 healthy_6 healthy TGTGCCAGTAAGGGTCATGTAGGGGCGGCTCAGCCCCAGCATTTT CASKGHVGAAQPQHF TRBV19*01 TRBJ1-5*01 1.0 16.0 _CASKGHVGAAQPQHF 3 5672 EBV-BRLF1 EBV 0.89 1264 EBV-BRLF1 141 5531 10 EBV BRLF1 YVLDHLIVV effector memory T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*02:01 B2M MHCI -13221 chip0516_36853 11.82 7.06 Chip4 healthy_8 healthy TGTGCCAGCAGCTTAGGACAGGCCTACGAGCAGTACTTC CASSLGQAYEQYF TRBV7-8*01 TRBJ2-7*01 19.0 1042.0 _CASSLGQAYEQYF 175 5821 EBNA3A-193-201 EBV 0.77 1022 EBNA3A-193-201 146 5675 10 EBV EBNA3A FLRGRAYGL effector memory T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-B*08:01 B2M MHCI -13222 chip0516_617315 -3.24 8.94 Chip4 healthy_6 healthy TGTGCACCTCTGGGGGAGCCCAGAAGCTGGTATTT CAPLGga?AQKLVF TRAV13-1*01 TRAJ54*01 3.0 151.0 CAPLGga?AQKLVF_ 1 6540 PGT-178 PGT 0.5 1480 NEG 102 6438 2 HomoSapiens PGT LLAGIGTVPI Naive T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*02:01 B2M MHCI -13223 chip0516_758189 -1.18 6.83 Chip4 healthy_8 healthy TGTGCCGTGAACATGAATGCGAATAACTATGGTCAGAATTTTGTCTTT CAVNMNANNYGQNFVF TRAV12-2*01 TRAJ26*01 38.0 1465.0 CAVNMNANNYGQNFVF_ 1 3883 IAPP-STN-9 IAPP 0.91 48 IAPP-STN-9 129 3754 3 HomoSapiens IAPP STNVGSNTY Naive T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*01:01 B2M MHCI -13224 chip0516_736964 10.67 11.33 Chip4 healthy_8 healthy TGTGCCAGCAGTTCAACGTTCCCCAACACCGGGGAGCTGTTTTTT CASSSTFPNTGELFF TRBV3-1*01 TRBJ2-2*01 49.0 3010.0 _CASSSTFPNTGELFF 2 4331 BZLF1-190-197 EBV 0.94 2156 BZLF1-190-197 129 4202 9 EBV BZLF1 RAKFKQLL effector memory T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-B*08:01 B2M MHCI -13225 chip0516_399081 -0.69 10.39 Chip4 healthy_7 healthy TGTGCCGTGAAGGGGGTCTCTGGCTCAGGAACCTACAAATACATCTTT CAVKGVSGSGTYKYIF TRAV12-2*01 TRAJ40*01 46.0 1846.0 TGTGCCAGTAGTCTTCGGGACGGACGGACGGACTATGGCTACACCTTC CASSLRDGRTDYGYTF TRBV19*01 TRBJ1-2*01 29.0 1845.0 CAVKGVSGSGTYKYIF_CASSLRDGRTDYGYTF 1 4417 PTPRN-962-970 PTPRN 0.87 5 NEG 115 4302 3 HomoSapiens PTPRN ALTAVAEEV Naive T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*02:01 B2M MHCI -13226 chip0516_113198 10.74 10.26 Chip4 healthy_6 healthy _ 6746 5673 EBV-LMP2A EBV 0.93 700 EBV-LMP2A 143 5530 9 EBV LMP2A CLGGLLTMV effector memory T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*02:01 B2M MHCI -13227 chip0516_715102 11.1 6.85 Chip4 healthy_6 healthy TGTGCTGTGGCCCTCTCAAGCAAATCAACCTTT CAVALSSKSTF TRAV8-3*01 TRAJ27*01 11.0 660.0 TGCGCCAGCAGCGGGGACGGAATGAACACTGAAGCTTTCTTT CASSGDGMNTEAFF TRBV10-2*01 TRBJ1-1*01 1.0 13.0 CAVALSSKSTF_CASSGDGMNTEAFF 50 7257 EBV-LMP2A EBV 0.92 700 EBV-LMP2A 138 7119 10 EBV LMP2A CLGGLLTMV effector memory T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*02:01 B2M MHCI -13228 chip0516_319659 10.36 9.91 Chip4 healthy_6 healthy TGTGCTGTGGCCCTCTCAAGCAAATCAACCTTT CAVALSSKSTF TRAV8-3*01 TRAJ27*01 6.0 580.0 CAVALSSKSTF_ 58 5482 EBV-LMP2A EBV 0.91 700 EBV-LMP2A 144 5338 9 EBV LMP2A CLGGLLTMV effector memory T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*02:01 B2M MHCI -13229 chip0516_6602 10.74 10.71 Chip4 healthy_8 healthy _ 6746 6026 EBNA3A-193-201 EBV 0.54 1022 EBNA3A-193-201 118 5908 9 EBV EBNA3A FLRGRAYGL effector memory T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-B*08:01 B2M MHCI -13230 chip0516_87473 11.01 7.56 Chip4 healthy_8 healthy TGCATCCTGCCCCTTGCTGGTGGTACTAGCTATGGAAAGCTGACATTT CILPLAGGTSYGKLTF TRAV26-2*01 TRAJ52*01 14.0 906.0 TGTGCCAGCAGCTTAGGACAGGCCTACGAGCAGTACTTC CASSLGQAYEQYF TRBV7-8*01 TRBJ2-7*01 33.0 2057.0 CILPLAGGTSYGKLTF_CASSLGQAYEQYF 308 4711 EBNA3A-193-201 EBV 0.88 1022 EBNA3A-193-201 124 4587 10 EBV EBNA3A FLRGRAYGL effector memory T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-B*08:01 B2M MHCI -13231 chip0516_221409 6.19 13.19 Chip4 healthy_7 healthy _ 6746 5325 EBV-LMP1-1 EBV 0.89 237 NEG 119 5206 7 EBV LMP1 YLLEMLWRL transitional T cells between effector and memory populations PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*02:01 B2M MHCI -13232 chip0516_32274 5.68 12.14 Chip4 healthy_8 healthy TGTGCAATGAACAGTGGAGGTAGCAACTATAAACTGACATTT CAMNSGGSNYKLTF TRAV14/DV4*01 TRAJ53*01 46.0 2345.0 CAMNSGGSNYKLTF_ 1 8771 NP30-38 FLU 0.64 72 NP30-38 122 8649 7 InfluenzaA NP RPIIRPATL transitional T cells between effector and memory populations PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-B*08:01 B2M MHCI -13233 chip0516_651777 10.52 7.06 Chip4 healthy_6 healthy TGCGCCAGCAGCGGGGACGGAATGAACACTGAAGCTTTCTTT CASSGDGMNTEAFF TRBV10-2*01 TRBJ1-1*01 51.0 3393.0 _CASSGDGMNTEAFF 131 9175 EBV-LMP2A EBV 1.0 700 EBV-LMP2A 141 9034 10 EBV LMP2A CLGGLLTMV effector memory T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*02:01 B2M MHCI -13234 chip0516_388756 -1.0 10.03 Chip4 healthy_7 healthy TGTGCCAGCAGTTATACCCTTAGCACAGATACGCAGTATTTT CASSYTLSTDTQYF TRBV6-5*01 TRBJ2-3*01 6.0 244.0 _CASSYTLSTDTQYF 1 5821 ROTA-VP3 ROTA 1.0 41 NEG 128 5693 3 RotavirusA VP3 YLLPGWKL Naive T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*02:01 B2M MHCI -13235 chip0516_49361 7.53 10.88 Chip4 healthy_8 healthy _ 6746 6291 ZNT8-YAY-8 ZNT8 0.96 54 ZNT8-YAY-8 121 6170 7 HomoSapiens ZNT8 YAYAKWKL transitional T cells between effector and memory populations PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-B*08:01 B2M MHCI -13236 chip0516_164774 -4.06 9.63 Chip4 healthy_8 healthy TGTGCAGCAACCGGCACTGCCAGTAAACTCACCTTT CAATGTASKLTF TRAV29/DV5*01 TRAJ44*01 27.0 2667.0 TGCAGTGCTAGAGCTTTGGGTAAGGGGGATACGCAGTATTTT CSARALGKGDTQYF TRBV20-1*01 TRBJ2-3*01 9.0 647.0 CAATGTASKLTF_CSARALGKGDTQYF 1 5507 INS-MAL-8 INS 0.51 38 INS-MAL-8 110 5397 2 HomoSapiens INS MALWMRLL Naive T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-B*08:01 B2M MHCI -13237 chip0516_795100 9.51 10.37 Chip4 healthy_8 healthy TGCATCCTGCCCCTTGCTGGTGGTACTAGCTATGGAAAGCTGACATTT CILPLAGGTSYGKLTF TRAV26-2*01 TRAJ52*01 15.0 730.0 TGTGCCAGCAGCTTAGGTCAGGCCTACGAGCAGTGCTTC CASSLGQAYEQCF TRBV7-8*01 TRBJ2-7*01 3.0 144.0 CILPLAGGTSYGKLTF_CASSLGQAYEQCF 1 7509 EBNA3A-193-201 EBV 0.97 1022 EBNA3A-193-201 127 7382 9 EBV EBNA3A FLRGRAYGL effector memory T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-B*08:01 B2M MHCI -13238 chip0516_856410 16.02 10.94 Chip4 healthy_6 healthy TGTGCCAGCAGCTCGGGACAGGGGGACAATGAGCAGTTCTTC CASSSGQGDNEQFF TRBV11-3*01 TRBJ2-1*01 18.0 777.0 _CASSSGQGDNEQFF 12 2912 EBV-BLMF1 EBV 0.85 2531 NEG 142 2770 12 EBV BLMF1 GLCTLVAML effector T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*02:01 B2M MHCI -13239 chip0516_687363 11.22 9.95 Chip4 healthy_6 healthy _ 6746 4521 EBV-LMP2A EBV 0.92 700 NEG 147 4374 9 EBV LMP2A CLGGLLTMV effector memory T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*02:01 B2M MHCI -13240 chip0516_399680 11.14 11.99 Chip4 healthy_8 healthy TGTGCCAGCAGCTTAGTTGTCAGTTGAAGCTTTCTTT CASSLV??gSVEAFF TRBV11-3*01 TRBJ1-1*01 1.0 73.0 _CASSLV??gSVEAFF 1 3349 BZLF1-190-197 EBV 0.86 2156 BZLF1-190-197 136 3213 9 EBV BZLF1 RAKFKQLL effector memory T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-B*08:01 B2M MHCI -13241 chip0516_863567 -2.31 8.3 Chip4 healthy_6 healthy TGCAGCGTTGAGGGCGGGGGCCTCGATGAGCAGTTCTTC CSVEGGGLDEQFF TRBV29-1*01 TRBJ2-1*01 1.0 30.0 _CSVEGGGLDEQFF 1 7679 PGT-178 PGT 0.96 1480 PGT-178 128 7551 3 HomoSapiens PGT LLAGIGTVPI Naive T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*02:01 B2M MHCI -13242 chip0516_449663 6.61 11.6 Chip4 healthy_6 healthy TGCAGCGTGGGGGGACAGGTTTGGGAGCAGTTCTTC CSVGGQVWEQFF TRBV29-1*01 TRBJ2-1*01 2.0 23.0 _CSVGGQVWEQFF 2 5713 EBV-LMP1-2 EBV 0.85 41 EBV-LMP1-2 132 5581 7 EBV LMP1 YLQQNWWTL transitional T cells between effector and memory populations PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*02:01 B2M MHCI -13243 chip0516_48912 -3.54 8.7 Chip4 healthy_8 healthy TGTGCAATTAAGGCTGGGGGTTACCAGAAAGTTACCTTT CAIKAGGYQKVTF TRAV12-3*01 TRAJ13*01 38.0 2315.0 TGCAGTGCCACGGACAGGGGCAGGCCGGATGAGCAGTTCTTC CSATDRGRPDEQFF TRBV20-1*01 TRBJ2-1*01 13.0 1177.0 CAIKAGGYQKVTF_CSATDRGRPDEQFF 1 7005 Nef90-97 HIV 0.84 8 Nef90-97 122 6883 2 HIV-1 Nef FLKEKGGL Naive T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-B*08:01 B2M MHCI -13244 chip0516_650538 -0.24 7.0 Chip4 healthy_7 healthy TGCAGCTTCATCTTAGACGGCGAGCAGTACTTC CSFILDGEQYF TRBV29-1*01 TRBJ2-7*01 148.0 17419.0 _CSFILDGEQYF 1 9060 PGT-178 PGT 0.71 1480 PGT-178 139 8921 3 HomoSapiens PGT LLAGIGTVPI Naive T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*02:01 B2M MHCI -13245 chip0516_156288 -3.29 10.02 Chip4 healthy_9 healthy TGTGCCAGCAGCTTACTAGCGGGGGCAAGAAATGAGCAGTTCTTC CASSLLAGARNEQFF TRBV7-9*01 TRBJ2-1*01 1.0 14.0 _CASSLLAGARNEQFF 1 5319 GAD2-RMM-9 GAD65 0.88 9 GAD2-RMM-9 128 5191 2 HomoSapiens GAD2 RMMEYGTTM Naive T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-B*08:01 B2M MHCI -13246 chip0516_279747 10.06 9.95 Chip4 healthy_6 healthy TGCGCCAGCAGCGGGGACGGAATGAACACTGAAGCTTTCTTT CASSGDGMNTEAFF TRBV10-2*01 TRBJ1-1*01 1.0 16.0 _CASSGDGMNTEAFF 131 7789 EBV-LMP2A EBV 0.86 700 EBV-LMP2A 113 7676 9 EBV LMP2A CLGGLLTMV effector memory T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*02:01 B2M MHCI -13247 chip0516_269910 -1.34 8.97 Chip4 healthy_7 healthy TGTGCCTGGAGTGTACCGTACAGGGGGCAACTTGAAGCTTTCTTT CAWSVPYRGQLEAFF TRBV30*01 TRBJ1-1*01 25.0 1437.0 _CAWSVPYRGQLEAFF 1 6235 ZNT8-115-123 ZNT8 0.94 74 ZNT8-115-123 161 6074 4 HomoSapiens ZNT8 LLSLFSLWL Naive T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*02:01 B2M MHCI -13248 chip0516_97276 -1.19 10.53 Chip4 healthy_6 healthy TGTGCAATGAGCATATCTAACTTTGGAAATGAGAAATTAACCTTT CAMSISNFGNEKLTF TRAV12-3*01 TRAJ48*01 22.0 785.0 TGTGCCAGCAGTTTAAGAGATGCTTCCTCTGGAAACACCATATATTTT CASSLRDASSGNTIYF TRBV12-3*01,TRBV12-4*01 TRBJ1-3*01 22.0 1108.0 CAMSISNFGNEKLTF_CASSLRDASSGNTIYF 1 5712 PGT-178 PGT 0.62 1480 PGT-178 108 5604 3 HomoSapiens PGT LLAGIGTVPI Naive T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*02:01 B2M MHCI -13249 chip0516_347686 10.06 9.39 Chip4 healthy_6 healthy TGCGCCAGCAGCGGGGACGGAATGAACACTGAAGCTTTCTTT CASSGDGMNTEAFF TRBV10-2*01 TRBJ1-1*01 29.0 1769.0 _CASSGDGMNTEAFF 131 5618 EBV-LMP2A EBV 0.89 700 EBV-LMP2A 137 5481 8 EBV LMP2A CLGGLLTMV effector memory T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*02:01 B2M MHCI -13250 chip0516_784568 11.69 7.68 Chip4 healthy_6 healthy TGCGCCAGCAGCGGGGACGGAATGAACACTGAAGCTTTCTTT CASSGDGMNTEAFF TRBV10-2*01 TRBJ1-1*01 9.0 572.0 _CASSGDGMNTEAFF 131 5548 EBV-LMP2A EBV 1.0 700 EBV-LMP2A 134 5414 10 EBV LMP2A CLGGLLTMV effector memory T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*02:01 B2M MHCI -13251 chip0516_700979 5.63 11.99 Chip4 healthy_6 healthy _ 6746 6428 EBV-LMP2-FLY EBV 0.91 355 NEG 121 6307 7 EBV LMP2 FLYALALLL transitional T cells between effector and memory populations PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*02:01 B2M MHCI -13252 chip0516_262175 15.73 10.16 Chip4 healthy_6 healthy TGTGCCAGCAGCCTCTATTCCCGGGACAGTAGTGAAGCTTTCTTT CASSLYSRDSSEAFF TRBV7-9*01 TRBJ1-1*01 29.0 1313.0 _CASSLYSRDSSEAFF 1 5313 IGRP-211-219 IGRP 0.85 13 IGRP-211-219 143 5170 12 HomoSapiens IGRP NLFLFLFAV effector T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*02:01 B2M MHCI -13253 chip0516_578375 13.27 10.0 Chip4 healthy_6 healthy _ 6746 4695 EBV-BLMF1 EBV 1.0 2531 EBV-BLMF1 133 4562 12 EBV BLMF1 GLCTLVAML effector T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*02:01 B2M MHCI -13254 chip0516_784830 -3.6 9.02 Chip4 healthy_7 healthy TGTGCCAGCAGTTTAGCGGGACCGACCGCTAACTATGGCTACACCTTC CASSLAGPTANYGYTF TRBV12-3*01,TRBV12-4*01 TRBJ1-2*01 2.0 128.0 _CASSLAGPTANYGYTF 1 5377 PGT-178 PGT 0.64 1480 NEG 112 5265 2 HomoSapiens PGT LLAGIGTVPI Naive T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*02:01 B2M MHCI -13255 chip0516_469820 9.95 6.98 Chip4 healthy_6 healthy TGTGCTGTGGCCCTCTCAAGCAAATCAACCTTT CAVALSSKSTF TRAV8-3*01 TRAJ27*01 2.0 23.0 CAVALSSKSTF_ 58 10071 EBV-LMP2A EBV 0.89 700 EBV-LMP2A 132 9939 10 EBV LMP2A CLGGLLTMV effector memory T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*02:01 B2M MHCI -13256 chip0516_44035 7.41 9.87 Chip4 healthy_6 healthy _ 6746 7091 EBV-LMP2A EBV 0.45 700 NEG 123 6968 7 EBV LMP2A CLGGLLTMV transitional T cells between effector and memory populations PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*02:01 B2M MHCI -13257 chip0516_748660 -2.53 7.68 Chip4 healthy_6 healthy TGTGCTCCATTAGGGGGGAACAACAGACTCGCTTTT CAPLGGNNRLAF TRAV16*01 TRAJ7*01 3.0 813.0 TGTGCCAGTAGTCCGCTTCTGTGGTCTGGAAACACCATATATTTT CASSPLLWSGNTIYF TRBV19*01 TRBJ1-3*01 4.0 65.0 CAPLGGNNRLAF_CASSPLLWSGNTIYF 1 6717 INS-14-23 INS 0.72 9 NEG 136 6581 2 HomoSapiens INS LALWGPDPAA Naive T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*02:01 B2M MHCI -13258 chip0516_508237 -5.27 9.53 Chip4 healthy_8 healthy TGTGCAGAGAATATAGGATTGGGCACCGACAAGCTCATCTTT CAENIGLGTDKLIF TRAV13-2*01 TRAJ34*01 49.0 4084.0 TGTGCTAGTGGTTTGTTTTCAGCCAACGCGGTCGATGGCTACACCTCC CASGLFSANAVDGYTS TRBV12-5*01 TRBJ1-2*01 7.0 524.0 CAENIGLGTDKLIF_CASGLFSANAVDGYTS 1 6830 GFAP-HLK-8 GFAP 0.81 28 GFAP-HLK-8 111 6719 2 HomoSapiens GFAP HLKRNIVV Naive T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-B*08:01 B2M MHCI -13259 chip0516_132795 14.45 10.06 Chip4 healthy_6 healthy TGTGCTCTTCAGGGAGCCCAGAAGCTGGTATTT CALQGAQKLVF TRAV38-1*01 TRAJ54*01 3.0 421.0 TGCGCCAGCAGCGGGGACGGAATGAACACTGAAGCTTTCTTT CASSGDGMNTEAFF TRBV10-2*01 TRBJ1-1*01 1.0 10.0 CALQGAQKLVF_CASSGDGMNTEAFF 1 4049 EBV-BRLF1 EBV 0.67 1264 NEG 130 3919 12 EBV BRLF1 YVLDHLIVV effector T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*02:01 B2M MHCI -13260 chip0516_224638 -4.13 9.69 Chip4 healthy_7 healthy TGTGCCAGCAGTGGCAACACTGAAGCTTTCTTT CASSGNTEAFF TRBV2*01 TRBJ1-1*01 16.0 1232.0 _CASSGNTEAFF 1 4760 MART1-ALA MART1 0.6 269 NEG 125 4635 2 HomoSapiens MART1 ALAGIGILTV Naive T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*02:01 B2M MHCI -13261 chip0516_309257 -3.17 9.03 Chip4 healthy_6 healthy TGCGCTGTGAGAGTTCCTTTATAACCAGGGAGGCAAGCTTATCTTC CAVRVPLta??acQGGKLIF TRAV1-1*01 TRAJ23*01 60.0 2685.0 TGTGCCAGCAGTTTAGACAGAGGTGAGCAGTTCTTC CASSLDRGEQFF TRBV27*01 TRBJ2-1*01 35.0 4227.0 CAVRVPLta??acQGGKLIF_CASSLDRGEQFF 1 6647 ZNT8-314-322 ZNT8 0.54 16 NEG 126 6521 2 HomoSapiens ZNT8 ILSAHVATA Naive T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*02:01 B2M MHCI -13262 chip0516_834539 -3.16 10.73 Chip4 healthy_8 healthy _ 6746 4920 LMP2A-CPL EBV 0.58 44 LMP2A-CPL 129 4791 3 EBV LMP2A CPLSKILL Naive T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-B*08:01 B2M MHCI -13263 chip0516_511037 5.85 9.85 Chip4 healthy_8 healthy TGTGCCTTCGAGGCGGACACCGGTAACCAGTTCTATTTT CAFEADTGNQFYF TRAV24*01 TRAJ49*01 1.0 200.0 TGCGCCAGCTATTCGACTAGCGGGGGCCAAGAGACCCAGTACTTC CASYSTSGGQETQYF TRBV2*01 TRBJ2-5*01 48.0 3712.0 CAFEADTGNQFYF_CASYSTSGGQETQYF 2 6775 NP44-52 FLU 0.47 474 NEG 132 6643 6 InfluenzaA NP CTELKLSDY central memory T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*01:01 B2M MHCI -13264 chip0516_510723 6.82 12.16 Chip4 healthy_8 healthy TGTGCCAGCAGTTTTAAGGATCCCTACGAGCAGTACTTC CASSFKDPYEQYF TRBV27*01 TRBJ2-7*01 78.0 5618.0 _CASSFKDPYEQYF 1 5155 EBNA3A-158-166 EBV 0.95 444 EBNA3A-158-166 119 5036 7 EBV EBNA3A QAKWRLQTL transitional T cells between effector and memory populations PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-B*08:01 B2M MHCI -13265 chip0516_489768 -0.3 7.88 Chip4 healthy_7 healthy TGCGGCACAGAGCCCCCGCTTGGCTATGGAAAGCTGACATTT CGTEPPLGYGKLTF TRAV30*01 TRAJ52*01 53.0 4280.0 TGTGCCAGCAGCGTAGTTGGGTCCGGGACTGAAGCTTTCTTT CASSVVGSGTEAFF TRBV9*01 TRBJ1-1*01 20.0 1320.0 CGTEPPLGYGKLTF_CASSVVGSGTEAFF 1 6574 EBV-BRLF1 EBV 0.68 1264 EBV-BRLF1 127 6447 4 EBV BRLF1 YVLDHLIVV Naive T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*02:01 B2M MHCI -13266 chip0516_291148 7.46 11.46 Chip4 healthy_8 healthy TGTGCCAGCAGTCTCAGGGAATTTCACGAGACCCAGTACTTC CASSLREFHETQYF TRBV6-1*01 TRBJ2-5*01 21.0 1203.0 _CASSLREFHETQYF 3 6104 EBNA3A-193-201 EBV 0.97 1022 EBNA3A-193-201 130 5974 7 EBV EBNA3A FLRGRAYGL transitional T cells between effector and memory populations PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-B*08:01 B2M MHCI -13267 chip0516_877467 9.91 9.46 Chip4 healthy_6 healthy TGCGCCAGCAGCGGGGACGGAATGAACACTGAAGCTTTCTTT CASSGDGMNTEAFF TRBV10-2*01 TRBJ1-1*01 9.0 410.0 _CASSGDGMNTEAFF 131 6302 EBV-LMP2A EBV 0.91 700 EBV-LMP2A 137 6165 9 EBV LMP2A CLGGLLTMV effector memory T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*02:01 B2M MHCI -13268 chip0516_623361 -1.44 8.19 Chip4 healthy_9 healthy TGTGCCAGCAGTGAATTTAGGGGGATGGGGTACTTC CASSEFRGMGYF TRBV2*01 TRBJ2-4*01 22.0 1706.0 _CASSEFRGMGYF 1 5977 gp160-2-10 HIV 0.67 6 NEG 122 5855 3 HIV-1 gp160 RVKEKYQHL Naive T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-B*08:01 B2M MHCI -13269 chip0516_298793 11.72 7.91 Chip4 healthy_8 healthy TGCATCCTGCCCCTTCCTGGTGGTCCTAGCTATGGGAAGCTGACATTT CILPLPGGPSYGKLTF TRAV26-2*01 TRAJ52*01 2.0 87.0 TGTGCCAGCAGCTTAGGACAGGCCTACGAGCAGTACTTC CASSLGQAYEQYF TRBV7-8*01 TRBJ2-7*01 10.0 983.0 CILPLPGGPSYGKLTF_CASSLGQAYEQYF 1 4606 EBNA3A-193-201 EBV 0.89 1022 EBNA3A-193-201 150 4456 10 EBV EBNA3A FLRGRAYGL effector memory T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-B*08:01 B2M MHCI -13270 chip0516_725430 12.61 9.05 Chip4 healthy_6 healthy _ 6746 3814 EBV-LMP2A EBV 0.94 700 EBV-LMP2A 139 3675 10 EBV LMP2A CLGGLLTMV effector memory T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*02:01 B2M MHCI -13271 chip0516_475613 -3.8 9.5 Chip4 healthy_8 healthy TGTGCCGTTATGGATAGCAACTATCAGTTAATCTGG CAVMDSNYQLIW TRAV12-2*01 TRAJ33*01 25.0 2892.0 TGCAGCGTTTTGCAGGGGCGAGAGCAGTACTTC CSVLQGREQYF TRBV29-1*01 TRBJ2-7*01 137.0 14611.0 CAVMDSNYQLIW_CSVLQGREQYF 1 4311 IAPP-ILK-8 IAPP 0.6 20 NEG 132 4179 2 HomoSapiens IAPP ILKLQVFL Naive T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-B*08:01 B2M MHCI -13272 chip0516_837389 6.44 11.54 Chip4 healthy_8 healthy TGTGCTTTTAGATCTTATAACACCGACAAGCTCATCTTT CAFRSYNTDKLIF TRAV20*01 TRAJ34*01 1.0 40.0 CAFRSYNTDKLIF_ 2 8106 NP30-38 FLU 0.73 72 NP30-38 112 7994 7 InfluenzaA NP RPIIRPATL transitional T cells between effector and memory populations PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-B*08:01 B2M MHCI -13273 chip0516_190845 5.67 11.94 Chip4 healthy_8 healthy TGTGCAGCAGTTAACACCGACAAGCTCATCTTT CAAVNTDKLIF TRAV29/DV5*01 TRAJ34*01 1.0 226.0 TGTGCTGAGGGGACTATGGCGGAACCCAGGGCAATCTCATCTTT CAEGTMAg?aTQGNLIF TRAV8-3*01 TRAJ42*01 2.0 62.0 0.5 CAAVNTDKLIF_ 1 5932 BZLF1-190-197 EBV 0.92 2156 BZLF1-190-197 125 5807 7 EBV BZLF1 RAKFKQLL transitional T cells between effector and memory populations PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-B*08:01 B2M MHCI -13274 chip0516_806987 6.51 12.1 Chip4 healthy_8 healthy TGTGCTTTTCTGGGGCCGTACAATAACAATGACATGCGCTTT CAFLGPYNNNDMRF TRAV38-1*01 TRAJ43*01 31.0 1611.0 TGTGCCAGCAGCCAAGCTCGGGACAGGGGTTGGACTGAAGCTTTCTTT CASSQARDRGWTEAFF TRBV3-1*01 TRBJ1-1*01 2.0 43.0 CAFLGPYNNNDMRF_CASSQARDRGWTEAFF 1 6096 NP30-38 FLU 0.74 72 NP30-38 113 5983 7 InfluenzaA NP RPIIRPATL transitional T cells between effector and memory populations PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-B*08:01 B2M MHCI -13275 chip0516_840163 11.2 7.56 Chip4 healthy_6 healthy _ 6746 5913 EBV-LMP2A EBV 0.95 700 EBV-LMP2A 132 5781 10 EBV LMP2A CLGGLLTMV effector memory T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*02:01 B2M MHCI -13276 chip0516_822725 6.44 13.07 Chip4 healthy_8 healthy TGTGCTTTTAGATCTTATAACACCAACAAGCTCATCTTT CAFRSYNTNKLIF TRAV20*01 TRAJ34*01 20.0 1631.0 CAFRSYNTNKLIF_ 1 5545 NP30-38 FLU 0.74 72 NP30-38 127 5418 7 InfluenzaA NP RPIIRPATL transitional T cells between effector and memory populations PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-B*08:01 B2M MHCI -13277 chip0516_512870 -3.87 9.99 Chip4 healthy_9 healthy _ 6746 5387 G6PC2-LTS-10 IGRP 0.61 59 G6PC2-LTS-10 134 5253 2 HomoSapiens G6PC2 LTSLTILQLY Naive T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*01:01 B2M MHCI -13278 chip0516_750272 6.56 12.4 Chip4 healthy_7 healthy TGTACGGAGAGTGGGTCTGCAGCCAGCCCCGGCCATCTCCTCTTT CTESGSAASPGHLLF TRAV5*01 TRAJ42*01 2.0 116.0 TGTGCCAGTAGTTCATATAGCAATCAGCCCCAGCATTTT CASSSYSNQPQHF TRBV19*01 TRBJ1-5*01 9.0 328.0 CTESGSAASPGHLLF_CASSSYSNQPQHF 1 6171 M1 FLU 0.96 1250 M1 138 6033 7 InfluenzaA M1 GILGFVFTL transitional T cells between effector and memory populations PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*02:01 B2M MHCI -13279 chip0516_564071 11.37 8.82 Chip4 healthy_6 healthy TGTGCTGTGGCCCTCTCAAGCAAATCAACCTTT CAVALSSKSTF TRAV8-3*01 TRAJ27*01 9.0 689.0 TGCGCCAGCAGCGGGGACGGAATGAACACTGAAGCTTTCTTT CASSGDGMNTEAFF TRBV10-2*01 TRBJ1-1*01 17.0 984.0 CAVALSSKSTF_CASSGDGMNTEAFF 50 6094 EBV-LMP2A EBV 1.0 700 EBV-LMP2A 148 5946 10 EBV LMP2A CLGGLLTMV effector memory T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*02:01 B2M MHCI -13280 chip0516_402922 10.56 11.56 Chip4 healthy_8 healthy _ 6746 4090 EBNA3A-193-201 EBV 0.89 1022 EBNA3A-193-201 141 3949 9 EBV EBNA3A FLRGRAYGL effector memory T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-B*08:01 B2M MHCI -13281 chip0516_343298 6.07 13.77 Chip4 healthy_10 healthy TGTGCTGTGGAGGATCAAAGCTGCAGGCAACAAGCTAACTTTT CAVEDQS??tAGNKLTF TRAV2*01 TRAJ17*01 6.0 129.0 CAVEDQS??tAGNKLTF_ 1 4884 NP380-388 FLU 0.49 60 NP380-388 130 4754 7 InfluenzaA NP ELRSRYWAI transitional T cells between effector and memory populations PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-B*08:01 B2M MHCI -13282 chip0516_69662 5.47 8.65 Chip4 healthy_6 healthy TGTGCCAGCAGTCCGTTGGGGGGGGCAGATGGCTACACCTTC CASSPLGGADGYTF TRBV6-1*01 TRBJ1-2*01 41.0 2869.0 _CASSPLGGADGYTF 5 7528 EBV-LMP2-FLY EBV 0.78 355 NEG 128 7400 6 EBV LMP2 FLYALALLL central memory T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*02:01 B2M MHCI -13283 chip0516_783513 -3.46 8.53 Chip4 healthy_8 healthy TGTGCTGTGAGAGAGAATAACAATGCCAGACTCATGTTT CAVRENNNARLMF TRAV1-2*01 TRAJ31*01 50.0 3511.0 TGTGTCCCGGTAGGAAGCGGGGGGGTTCTGGATACGCAGTATTTT CVPVGSGGVLDTQYF TRBV2*01 TRBJ2-3*01 36.0 2556.0 CAVRENNNARLMF_CVPVGSGGVLDTQYF 1 7628 NP413-421 FLU 0.79 16 NP413-421 117 7511 2 InfluenzaA NP ALKCKGFHV Naive T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-B*08:01 B2M MHCI -13284 chip0516_311181 -2.66 13.26 Chip4 healthy_8 healthy TGTGCAATGCGCGCGCTGTTTCCCCTGGTTCTGCAAGGCAACTGACCTGT CAMRALFPc?tGSARQLTC TRAV14/DV4*01 TRAJ22*01 2.0 91.0 TGTGCCAGCAGCTTGGCAGGGGCCTACGAGCAGTACTTC CASSLAGAYEQYF TRBV5-4*01 TRBJ2-7*01 3.0 154.0 CAMRALFPc?tGSARQLTC_CASSLAGAYEQYF 1 3495 EBNA3A-158-166 EBV 0.8 444 EBNA3A-158-166 117 3378 1 EBV EBNA3A QAKWRLQTL Naive T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-B*08:01 B2M MHCI -13285 chip0516_327214 6.67 11.22 Chip4 healthy_8 healthy TGCATCCTGCCCCTTGCTGGTGGTACTAGCTATGGAAAGCTGACATTT CILPLAGGTSYGKLTF TRAV26-2*01 TRAJ52*01 61.0 3768.0 CILPLAGGTSYGKLTF_ 55 6443 EBNA3A-193-201 EBV 0.85 1022 EBNA3A-193-201 127 6316 7 EBV EBNA3A FLRGRAYGL transitional T cells between effector and memory populations PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-B*08:01 B2M MHCI -13286 chip0516_248997 5.46 12.71 Chip4 healthy_8 healthy TGCATCCTGCCCCTTGCTGGTGGTACTAGCTATGGAAAGCTGACATTT CILPLAGGTSYGKLTF TRAV26-2*01 TRAJ52*01 22.0 869.0 TGTGCCAGCAGCTTAGGACAGGCCTACGAGCAGTACTTC CASSLGQAYEQYF TRBV7-8*01 TRBJ2-7*01 18.0 680.0 CILPLAGGTSYGKLTF_CASSLGQAYEQYF 308 6334 EBNA3A-193-201 EBV 0.77 1022 EBNA3A-193-201 133 6201 7 EBV EBNA3A FLRGRAYGL transitional T cells between effector and memory populations PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-B*08:01 B2M MHCI -13287 chip0516_507015 12.9 9.96 Chip4 healthy_9 healthy TGTGCACCCTGGGACTTCAACAAATTTTACTTT CAPWDFNKFYF TRAV13-1*01 TRAJ21*01 3.0 354.0 TGTGCCAGCAGCTTAAGGGGGGGGAACACTGAAGCTTTCTTT CASSLRGGNTEAFF TRBV7-2*01 TRBJ1-1*01 15.0 491.0 CAPWDFNKFYF_CASSLRGGNTEAFF 1 3591 BZLF1-190-197 EBV 0.69 2156 BZLF1-190-197 142 3449 10 EBV BZLF1 RAKFKQLL effector memory T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-B*08:01 B2M MHCI -13288 chip0516_882226 8.59 8.93 Chip4 healthy_6 healthy TGTGCTGTGGCCCTCTCCAGCAAATCCACCTTT CAVALSSKSTF TRAV8-3*01 TRAJ27*01 1.0 11.0 TGCGCCAGCAGCGGGGACGGAATGAACACTGAAGCTTTCTTT CASSGDGMNTEAFF TRBV10-2*01 TRBJ1-1*01 4.0 156.0 CAVALSSKSTF_CASSGDGMNTEAFF 50 9360 EBV-LMP2A EBV 0.94 700 EBV-LMP2A 123 9237 8 EBV LMP2A CLGGLLTMV effector memory T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*02:01 B2M MHCI -13289 chip0516_249389 9.75 8.0 Chip4 healthy_6 healthy TGTGCTGTGGCCCTCTCAAGCAAATCAACCTTT CAVALSSKSTF TRAV8-3*01 TRAJ27*01 10.0 551.0 CAVALSSKSTF_ 58 8486 EBV-LMP2A EBV 0.98 700 EBV-LMP2A 157 8329 8 EBV LMP2A CLGGLLTMV effector memory T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*02:01 B2M MHCI -13290 chip0516_817016 14.73 10.99 Chip4 healthy_8 healthy TGTGCCAGCAGCTTAGGACAGGCCTACGAGCAGTACTTC CASSLGQAYEQYF TRBV7-8*01 TRBJ2-7*01 3.0 177.0 _CASSLGQAYEQYF 175 3680 EBNA3A-193-201 EBV 0.88 1022 EBNA3A-193-201 136 3544 12 EBV EBNA3A FLRGRAYGL effector T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-B*08:01 B2M MHCI -13291 chip0516_100973 -1.29 7.85 Chip4 healthy_7 healthy TGTGCAATGAGTATCTCTAACTTTGGAAATGAGAAATTAACCTTT CAMSISNFGNEKLTF TRAV12-3*01 TRAJ48*01 7.0 117.0 CAMSISNFGNEKLTF_ 13 5416 PGT-178 PGT 0.51 1480 PGT-178 149 5267 3 HomoSapiens PGT LLAGIGTVPI Naive T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*02:01 B2M MHCI -13292 chip0516_570974 -1.22 7.11 Chip4 healthy_8 healthy TGTGCAATGAGAGAAGCCCTCGCGGCCCGAAAGCTGCAGGCAACAAGCTAACTTTT CAMREALAAc?gKAAGNKLTF TRAV14/DV4*01 TRAJ17*01 8.0 352.0 TGTGCCAGCAGCCTGATACTAGCGGCGGGCAGTGAGCAGTTCTTC CASSLILAAGSEQFF TRBV7-3*01 TRBJ2-1*01 3.0 200.0 CAMREALAAc?gKAAGNKLTF_CASSLILAAGSEQFF 1 7028 BZLF1-190-197 EBV 0.65 2156 BZLF1-190-197 157 6871 3 EBV BZLF1 RAKFKQLL Naive T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-B*08:01 B2M MHCI -13293 chip0516_547963 11.97 8.4 Chip4 healthy_8 healthy TGCATCCTGCCCCTTGCTGGTGGTACTAGCTATGGAAAGCTGACATTT CILPLAGGTSYGKLTF TRAV26-2*01 TRAJ52*01 38.0 2251.0 CILPLAGGTSYGKLTF_ 55 4512 EBNA3A-193-201 EBV 0.9 1022 EBNA3A-193-201 124 4388 10 EBV EBNA3A FLRGRAYGL effector memory T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-B*08:01 B2M MHCI -13294 chip0516_732967 11.67 7.66 Chip4 healthy_8 healthy TGCATCCTGCCCCTTGCTGGTGGTACTAGCTATGGAAAGCTGACATTT CILPLAGGTSYGKLTF TRAV26-2*01 TRAJ52*01 47.0 3206.0 TGTGCCAGCAGCTTAGGACAGGCCTACGAGCAGTACTTC CASSLGQAYEQYF TRBV7-8*01 TRBJ2-7*01 20.0 1647.0 CILPLAGGTSYGKLTF_CASSLGQAYEQYF 308 5166 EBNA3A-193-201 EBV 0.95 1022 EBNA3A-193-201 129 5037 10 EBV EBNA3A FLRGRAYGL effector memory T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-B*08:01 B2M MHCI -13295 chip0516_143902 11.78 6.42 Chip4 healthy_8 healthy TGTGCTGTGACCCTTACCCTCTCCTCTGGGGCTGGGAGTTACCAACTCACTTTC CAVTLTLSSGAGSYQLTF TRAV21*01 TRAJ28*01 11.0 500.0 TGTGCCAGCAGTTTAATGGGGACAGGGGGCTTGAGTGAAAAACTGTTTTCT CASSLMGTGGLSEKLFS TRBV28*01 TRBJ1-4*01 6.0 181.0 CAVTLTLSSGAGSYQLTF_CASSLMGTGGLSEKLFS 1 7267 EBNA3A-158-166 EBV 0.68 444 EBNA3A-158-166 139 7128 6 EBV EBNA3A QAKWRLQTL central memory T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-B*08:01 B2M MHCI -13296 chip0516_406777 9.67 10.25 Chip4 healthy_8 healthy TGTGCCAGCAACTTAGGACAGGCCTACGAGCAGTACTTC CASNLGQAYEQYF TRBV7-8*01 TRBJ2-7*01 15.0 930.0 _CASNLGQAYEQYF 1 5811 EBNA3A-193-201 EBV 0.96 1022 EBNA3A-193-201 105 5706 9 EBV EBNA3A FLRGRAYGL effector memory T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-B*08:01 B2M MHCI -13297 chip0516_580441 -3.78 9.08 Chip4 healthy_7 healthy _ 6746 5971 PGT-178 PGT 0.81 1480 PGT-178 121 5850 2 HomoSapiens PGT LLAGIGTVPI Naive T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*02:01 B2M MHCI -13298 chip0516_324151 12.8 7.1 Chip4 healthy_8 healthy TGCATCCTGCCCCTTGCTGGTGGTACAAGCTATGGGTAGCTGACATTT CILPLAGGTSYG*LTF TRAV26-2*01 TRAJ52*01 5.0 232.0 TGTGCCAGCAGCTCCGGACAGGCCTACGAGCAGTACTTC CASSSGQAYEQYF TRBV7-8*01 TRBJ2-7*01 12.0 568.0 CILPLAGGTSYG*LTF_CASSSGQAYEQYF 1 5031 EBNA3A-193-201 EBV 0.92 1022 EBNA3A-193-201 122 4909 10 EBV EBNA3A FLRGRAYGL effector memory T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-B*08:01 B2M MHCI -13299 chip0516_74612 6.29 14.16 Chip4 healthy_10 healthy TACGCTGTGGAGGATCAAAGCTGCAGGCAACAAGCTAATTTTT YAVEDQS??tAGNKLIF TRAV2*01 TRAJ17*01 4.0 185.0 YAVEDQS??tAGNKLIF_ 1 4342 NP380-388 FLU 0.63 60 NEG 122 4220 7 InfluenzaA NP ELRSRYWAI transitional T cells between effector and memory populations PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-B*08:01 B2M MHCI -13300 chip0516_685407 7.07 13.76 Chip4 healthy_10 healthy TGTGCTGTCCACTTTTCAGATGGCCAGAAGCTGCTCTTT CAVHFSDGQKLLF TRAV36/DV7*01 TRAJ16*01 2.0 89.0 TGCCGTGGGCAGACAAACCTAACTACACCGGGGAGCTGTTTTTT CRGQTNLa?cYTGELFF TRBV20-1*01 TRBJ2-2*01 7.0 423.0 CAVHFSDGQKLLF_CRGQTNLa?cYTGELFF 1 3454 NP44-52 FLU 0.91 474 NP44-52 145 3309 7 InfluenzaA NP CTELKLSDY transitional T cells between effector and memory populations PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*01:01 B2M MHCI -13301 chip0516_4044 14.92 12.98 Chip4 healthy_8 healthy TGCATCCTGCCCCTTGCTGGTGGTACTAGCTATGGAAAGCTGACATTT CILPLAGGTSYGKLTF TRAV26-2*01 TRAJ52*01 75.0 3794.0 TGTGCCAGCAGCTTAGGACAGGCCTACGAGCAGTACTTC CASSLGQAYEQYF TRBV7-8*01 TRBJ2-7*01 37.0 2535.0 CILPLAGGTSYGKLTF_CASSLGQAYEQYF 308 1854 EBNA3A-193-201 EBV 0.96 1022 EBNA3A-193-201 126 1728 12 EBV EBNA3A FLRGRAYGL effector T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-B*08:01 B2M MHCI -13302 chip0516_121274 6.56 10.99 Chip4 healthy_8 healthy _ 6746 8760 EBNA3A-158-166 EBV 0.87 444 EBNA3A-158-166 122 8638 7 EBV EBNA3A QAKWRLQTL transitional T cells between effector and memory populations PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-B*08:01 B2M MHCI -13303 chip0516_729135 -0.88 8.23 Chip4 healthy_7 healthy TGTGCCAGCAGCTCATGGACTGCTCAGTACGAGCAGTACTTC CASSSWTAQYEQYF TRBV28*01 TRBJ2-7*01 11.0 675.0 _CASSSWTAQYEQYF 1 5120 PREINS-101-109 INS 0.83 3 PREINS-101-109 120 5000 4 HomoSapiens PREINS SLYQLENYC Naive T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*02:01 B2M MHCI -13304 chip0516_387464 10.65 7.25 Chip4 healthy_6 healthy TGCAGTGCTTTGGGAGACAGGGGGCTTAGGGGCAATCAGCCCCAGCATTTT CSALGDRGLRGNQPQHF TRBV20-1*01 TRBJ1-5*01 31.0 1886.0 _CSALGDRGLRGNQPQHF 2 4712 EBV-BLMF1 EBV 0.88 2531 NEG 137 4575 10 EBV BLMF1 GLCTLVAML effector memory T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*02:01 B2M MHCI -13305 chip0516_200773 10.17 9.81 Chip4 healthy_6 healthy TGTGCTGTGGCCCTCTCAAGCAAATCAACCTTT CAVALSSKSTF TRAV8-3*01 TRAJ27*01 9.0 975.0 TGCGCCAGCAGCGGGGACGGAATGAACACTGAAGCTTTCTTT CASSGDGMNTEAFF TRBV10-2*01 TRBJ1-1*01 12.0 550.0 CAVALSSKSTF_CASSGDGMNTEAFF 50 7397 EBV-LMP2A EBV 0.89 700 EBV-LMP2A 127 7270 9 EBV LMP2A CLGGLLTMV effector memory T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*02:01 B2M MHCI -13306 chip0516_515231 6.33 9.93 Chip4 healthy_8 healthy TGCATCCTGCCCCTTGCTGGTGGTACTAGCTATGGAAAGCTGACATTT CILPLAGGTSYGKLTF TRAV26-2*01 TRAJ52*01 14.0 762.0 TGTGCCAGCAGCTCCGGACAGGCCTACGAGCAGTACTTC CASSSGQAYEQYF TRBV7-8*01 TRBJ2-7*01 8.0 604.0 CILPLAGGTSYGKLTF_CASSSGQAYEQYF 40 8566 EBNA3A-193-201 EBV 0.87 1022 EBNA3A-193-201 147 8419 6 EBV EBNA3A FLRGRAYGL central memory T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-B*08:01 B2M MHCI -13307 chip0516_452302 -2.28 8.37 Chip4 healthy_9 healthy _ 6746 7099 BZLF1-190-197 EBV 0.4 2156 NEG 112 6987 2 EBV BZLF1 RAKFKQLL Naive T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-B*08:01 B2M MHCI -13308 chip0516_274290 9.89 9.75 Chip4 healthy_6 healthy _ 6746 5792 EBV-LMP2A EBV 1.0 700 EBV-LMP2A 120 5672 9 EBV LMP2A CLGGLLTMV effector memory T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*02:01 B2M MHCI -13309 chip0516_484127 0.53 8.63 Chip4 healthy_8 healthy TGTGCAGAGAGTGCAGGAACTGCTCTGATCTTT CAESAGTALIF TRAV13-2*01 TRAJ15*01 16.0 1198.0 TGCGCCAGCAGCCAAGTCGTGAGGCAGCCCCAGCATTTT CASSQVVRQPQHF TRBV4-1*01 TRBJ1-5*01 16.0 630.0 CAESAGTALIF_CASSQVVRQPQHF 1 6357 EBNA3A-158-166 EBV 0.93 444 EBNA3A-158-166 129 6228 4 EBV EBNA3A QAKWRLQTL Naive T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-B*08:01 B2M MHCI -13310 chip0516_245928 10.1 9.19 Chip4 healthy_6 healthy TGTGCTGTGGCCCTCTCAAGCAAATCAACCTTT CAVALSSKSTF TRAV8-3*01 TRAJ27*01 12.0 1171.0 TGCGCCAGCAGCGGGGACGGAATGAACACTGAAGCTTTCTTT CASSGDGMNTEAFF TRBV10-2*01 TRBJ1-1*01 6.0 141.0 CAVALSSKSTF_CASSGDGMNTEAFF 50 6288 EBV-LMP2A EBV 0.93 700 EBV-LMP2A 124 6164 8 EBV LMP2A CLGGLLTMV effector memory T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*02:01 B2M MHCI -13311 chip0516_871389 6.97 13.13 Chip4 healthy_6 healthy _ 6746 4285 ROTA-VP6 ROTA 1.0 47 NEG 129 4156 7 RotavirusA VP6 TLLANVTAV transitional T cells between effector and memory populations PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*02:01 B2M MHCI -13312 chip0516_501523 6.15 12.49 Chip4 healthy_8 healthy _ 6746 5740 NP44-52 FLU 0.91 474 NP44-52 122 5618 7 InfluenzaA NP CTELKLSDY transitional T cells between effector and memory populations PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*01:01 B2M MHCI -13313 chip0516_485545 9.43 12.24 Chip4 healthy_6 healthy TGTGCCAGCAGTTACCTGGGGGGGGGTTTTGGCTACACCTTC CASSYLGGGFGYTF TRBV6-5*01 TRBJ1-2*01 11.0 626.0 _CASSYLGGGFGYTF 3 5573 EBV-LMP2-FLY EBV 1.0 355 EBV-LMP2-FLY 122 5451 7 EBV LMP2 FLYALALLL transitional T cells between effector and memory populations PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*02:01 B2M MHCI -13314 chip0516_606145 6.62 11.41 Chip4 healthy_7 healthy TGTGCTACGGTCCTGGACATGGAATATGGAAACAAACTGGTCTTT CATVLDMEYGNKLVF TRAV17*01 TRAJ47*01 16.0 708.0 TGTGCCAGCAGCGGAGGGGACAGGGCCATGATCAGCCCCAGCATTTT CASSGGDag?GHDQPQHF TRBV7-9*01 TRBJ1-5*01 1.0 19.0 CATVLDMEYGNKLVF_CASSGGDag?GHDQPQHF 1 5504 M1 FLU 1.0 1250 M1 131 5373 7 InfluenzaA M1 GILGFVFTL transitional T cells between effector and memory populations PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*02:01 B2M MHCI -13315 chip0516_194924 5.61 9.13 Chip4 healthy_8 healthy TGCATCCTGCCCCTTGCTGGTGGTACTAGCTATGGAAAGCTGACATTT CILPLAGGTSYGKLTF TRAV26-2*01 TRAJ52*01 26.0 1285.0 CILPLAGGTSYGKLTF_ 55 5659 EBNA3A-193-201 EBV 0.87 1022 EBNA3A-193-201 145 5514 6 EBV EBNA3A FLRGRAYGL central memory T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-B*08:01 B2M MHCI -13316 chip0516_514047 -3.36 8.84 Chip4 healthy_6 healthy TGCATCGCCGAATCTGGGGCTGGGAGTTACCAACTCACTTTC CIAESGAGSYQLTF TRAV26-1*01 TRAJ28*01 26.0 2027.0 TGTGCTGTGAGTGAGAGGGGATAGTGGAGGTAGCAACTATAAACTGACATTT CAVSERG*tg??gaGSNYKLTF TRAV8-4*01 TRAJ53*01 51.0 1812.0 0.5 TGCGCCAGCAGCTTGGAAGAGGGACAGACCCAGTACTTC CASSLEEGQTQYF TRBV5-1*01 TRBJ2-5*01 1.0 18.0 CIAESGAGSYQLTF_CASSLEEGQTQYF 1 5489 ZNT8-281-290 ZNT8 0.71 6 NEG 102 5387 2 HomoSapiens ZNT8 SLNYSGVKEL Naive T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*02:01 B2M MHCI -13317 chip0516_308095 12.39 6.47 Chip4 healthy_6 healthy _ 6746 6112 EBV-LMP2A EBV 0.92 700 NEG 132 5980 10 EBV LMP2A CLGGLLTMV effector memory T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*02:01 B2M MHCI -13318 chip0516_792784 9.37 9.44 Chip4 healthy_6 healthy _ 6746 6170 EBV-LMP2A EBV 0.9 700 EBV-LMP2A 137 6033 8 EBV LMP2A CLGGLLTMV effector memory T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*02:01 B2M MHCI -13319 chip0516_63092 -3.42 8.74 Chip4 healthy_7 healthy _ 6746 5502 PTPRN-790-798 PTPRN 0.89 6 NEG 128 5374 2 HomoSapiens PTPRN TIADFWQMV Naive T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*02:01 B2M MHCI -13320 chip0516_183642 11.52 8.94 Chip4 healthy_8 healthy TGCATCCTGCCCCTTGCTGGTGGTACTAGCTATGGAAAGCTGACATTT CILPLAGGTSYGKLTF TRAV26-2*01 TRAJ52*01 24.0 1486.0 TGTGCCAGCAGCTCCGGACAGGCCTACGAGCAGTACTTC CASSSGQAYEQYF TRBV7-8*01 TRBJ2-7*01 11.0 527.0 CILPLAGGTSYGKLTF_CASSSGQAYEQYF 40 4107 EBNA3A-193-201 EBV 0.87 1022 EBNA3A-193-201 135 3972 10 EBV EBNA3A FLRGRAYGL effector memory T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-B*08:01 B2M MHCI -13321 chip0516_124231 15.9 10.67 Chip4 healthy_6 healthy _ 6746 3988 EBV-BLMF1 EBV 1.0 2531 NEG 143 3845 12 EBV BLMF1 GLCTLVAML effector T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*02:01 B2M MHCI -13322 chip0516_534435 -3.49 9.24 Chip4 healthy_8 healthy _ 6746 5603 Nef90-97 HIV 0.82 8 NEG 130 5473 2 HIV-1 Nef FLKEKGGL Naive T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-B*08:01 B2M MHCI -13323 chip0516_722968 -3.25 8.52 Chip4 healthy_6 healthy _ 6746 8698 GFAP-214-222 GFAP 0.8 6 NEG 130 8568 2 HomoSapiens GFAP QLARQQVHV Naive T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*02:01 B2M MHCI -13324 chip0516_594242 9.39 9.53 Chip4 healthy_6 healthy TGTGCTGTGGCCCTCTCAAGCAAATCAACCTTT CAVALSSKSTF TRAV8-3*01 TRAJ27*01 3.0 241.0 TGCGCCAGCAGCGGGGACGGAATGAACACTGAAGCTTTCTTT CASSGDGMNTEAFF TRBV10-2*01 TRBJ1-1*01 19.0 1117.0 CAVALSSKSTF_CASSGDGMNTEAFF 50 7979 EBV-LMP2A EBV 0.79 700 EBV-LMP2A 141 7838 8 EBV LMP2A CLGGLLTMV effector memory T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*02:01 B2M MHCI -13325 chip0516_753765 5.79 11.79 Chip4 healthy_8 healthy TGTGCCAGCAGTGAATGGGCAGGCAATAGCAATCAGCCCCAGCATTTT CASSEWAGNSNQPQHF TRBV2*01 TRBJ1-5*01 15.0 806.0 _CASSEWAGNSNQPQHF 1 5776 GAD2-HPR-8 GAD65 0.73 9 GAD2-HPR-8 155 5621 7 HomoSapiens GAD2 HPRYFNQL transitional T cells between effector and memory populations PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-B*08:01 B2M MHCI -13326 chip0516_278556 6.66 11.1 Chip4 healthy_6 healthy TGTGCCAGCAGCCCTCCCTACAATGAGCAGTTCTTC CASSPPYNEQFF TRBV7-8*01 TRBJ2-1*01 10.0 566.0 _CASSPPYNEQFF 4 6852 ZNT8-115-123 ZNT8 1.0 74 NEG 160 6692 7 HomoSapiens ZNT8 LLSLFSLWL transitional T cells between effector and memory populations PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*02:01 B2M MHCI -13327 chip0516_254012 11.64 7.74 Chip4 healthy_8 healthy TGTGCCGTGAAGACGGACACCAATGCAGGCAAATCAACCTTT CAVKTDTNAGKSTF TRAV12-2*01 TRAJ27*01 26.0 1099.0 TGTGCCAGCAGTGACTCGATAGGGTTTAATTCACCCCTCCACTTT CASSDSIGFNSPLHF TRBV6-4*01 TRBJ1-6*01 41.0 1659.0 CAVKTDTNAGKSTF_CASSDSIGFNSPLHF 3 4868 EBNA3A-193-201 EBV 0.73 1022 EBNA3A-193-201 146 4722 10 EBV EBNA3A FLRGRAYGL effector memory T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-B*08:01 B2M MHCI -13328 chip0516_808671 11.18 12.5 Chip4 healthy_6 healthy TGTGCTGTGGCCCTCTCAAGCAAATCAACCTTT CAVALSSKSTF TRAV8-3*01 TRAJ27*01 19.0 1828.0 CAVALSSKSTF_ 58 3755 EBV-LMP2A EBV 1.0 700 EBV-LMP2A 138 3617 11 EBV LMP2A CLGGLLTMV effector T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*02:01 B2M MHCI -13329 chip0516_489498 -2.21 9.2 Chip4 healthy_9 healthy TGTGCCAGCAGTTTCAGAAGGGACCCAATTAACTATGGCTACACCTTC CASSFRRDPINYGYTF TRBV27*01 TRBJ1-2*01 29.0 1917.0 _CASSFRRDPINYGYTF 1 5633 ZNT8-YAY-8 ZNT8 0.84 54 ZNT8-YAY-8 131 5502 3 HomoSapiens ZNT8 YAYAKWKL Naive T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-B*08:01 B2M MHCI -13330 chip0516_408708 5.68 13.17 Chip4 healthy_6 healthy _ 6746 5539 M1 FLU 0.92 1250 M1 119 5420 7 InfluenzaA M1 GILGFVFTL transitional T cells between effector and memory populations PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*02:01 B2M MHCI -13331 chip0516_463053 -3.29 13.37 Chip4 healthy_8 healthy TGTGCCAGCAGTGCCCAAAGAGTGAACACTGAAGCTTTCTTT CASSAQRVNTEAFF TRBV2*01 TRBJ1-1*01 19.0 844.0 _CASSAQRVNTEAFF 1 5314 EBNA3A-158-166 EBV 0.91 444 EBNA3A-158-166 118 5196 1 EBV EBNA3A QAKWRLQTL Naive T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-B*08:01 B2M MHCI -13332 chip0516_755978 -1.72 10.52 Chip4 healthy_7 healthy TTCGTGGACGCTATATCTAACTTTTGGAATGAGAAATTAACCTTT FVDAISNFWNEKLTF TRAV12-1*01 TRAJ48*01 2.0 86.0 TGTCTCACGGGGGGGCAGCGAGTTAATGAGCAGTTCTTC CLTGGQRVNEQFF TRBV2*01 TRBJ2-1*01 54.0 5129.0 FVDAISNFWNEKLTF_CLTGGQRVNEQFF 1 4988 PGT-178 PGT 0.7 1480 PGT-178 99 4889 3 HomoSapiens PGT LLAGIGTVPI Naive T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*02:01 B2M MHCI -13333 chip0516_827324 8.78 11.11 Chip4 healthy_8 healthy TGCATCCTGCCCCTTGCTGGTGGTACTAGCTATGGAAAGCTGACATTT CILPLAGGTSYGKLTF TRAV26-2*01 TRAJ52*01 46.0 2560.0 TGTGCCAGCAGCTTAGGACAGGCCTACGAGCAGTACTTC CASSLGQAYEQYF TRBV7-8*01 TRBJ2-7*01 26.0 1938.0 CILPLAGGTSYGKLTF_CASSLGQAYEQYF 308 7558 EBNA3A-193-201 EBV 0.88 1022 EBNA3A-193-201 122 7436 9 EBV EBNA3A FLRGRAYGL effector memory T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-B*08:01 B2M MHCI -13334 chip0516_697757 -0.95 9.79 Chip4 healthy_7 healthy TGTGTGGTGAGCGCGGAGCCCTGGTGGCTCCAATAAGCTGATTTTT CVVSAEPtg??gtGSNKLIF TRAV10*01 TRAJ4*01 22.0 1349.0 CVVSAEPtg??gtGSNKLIF_ 1 6282 PGT-178 PGT 0.65 1480 PGT-178 115 6167 3 HomoSapiens PGT LLAGIGTVPI Naive T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*02:01 B2M MHCI -13335 chip0516_871011 5.94 12.81 Chip4 healthy_6 healthy TGCATCGTCAGAGTCCGTGACGGACTCACCTTT CIVRVRDGLTF TRAV26-1*01 TRAJ45*01 20.0 1674.0 TGTGCCTGGGGACTAGATGGCAATGAGCAGTTCTTC CAWGLDGNEQFF TRBV30*01 TRBJ2-1*01 28.0 2071.0 CIVRVRDGLTF_CAWGLDGNEQFF 1 4994 CVB3-P3A CVB 0.97 77 CVB3-P3A 113 4881 7 CoxsackievirusB P3A GIIYIIYKL transitional T cells between effector and memory populations PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*02:01 B2M MHCI -13336 chip0516_531971 -2.57 10.62 Chip4 healthy_9 healthy _ 6746 4015 LMP2A-CPL EBV 0.77 44 LMP2A-CPL 133 3882 4 EBV LMP2A CPLSKILL Naive T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-B*08:01 B2M MHCI -13337 chip0516_237009 -4.35 8.74 Chip4 healthy_10 healthy TGTGCCAGCAGCCAAGATCGGGGATTGTCTGGAAACACCATATATTTT CASSQDRGLSGNTIYF TRBV3-1*01 TRBJ1-3*01 68.0 3725.0 _CASSQDRGLSGNTIYF 1 5615 gp160-2-10 HIV 0.86 6 NEG 110 5505 2 HIV-1 gp160 RVKEKYQHL Naive T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-B*08:01 B2M MHCI -13338 chip0516_227206 -3.51 13.05 Chip4 healthy_9 healthy TGTGCCAGCAGTGGACCCTACGAGCAGTACTTC CASSGPYEQYF TRBV28*01 TRBJ2-7*01 14.0 1342.0 _CASSGPYEQYF 1 3287 INS-MAL-8 INS 0.5 38 NEG 118 3169 1 HomoSapiens INS MALWMRLL Naive T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-B*08:01 B2M MHCI -13339 chip0516_368768 5.24 9.62 Chip4 healthy_6 healthy TGTGCCAGCGGGGCCCAGGGAGGAGGCTATGGCTACACCTTC CASGAQGGGYGYTF TRBV6-1*01 TRBJ1-2*01 13.0 1089.0 _CASGAQGGGYGYTF 3 5382 EBV-LMP2-FLY EBV 0.74 355 NEG 131 5251 6 EBV LMP2 FLYALALLL central memory T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*02:01 B2M MHCI -13340 chip0516_225288 10.81 8.83 Chip4 healthy_6 healthy TGTGCTGTGGCCCTCTCAAGCAAATCAACCTTT CAVALSSKSTF TRAV8-3*01 TRAJ27*01 3.0 208.0 TGCGCCAGCAGCGGGGACGGAATGAACACTGAAGCTTTCTTT CASSGDGMNTEAFF TRBV10-2*01 TRBJ1-1*01 13.0 738.0 CAVALSSKSTF_CASSGDGMNTEAFF 50 6497 EBV-LMP2A EBV 0.96 700 EBV-LMP2A 156 6341 10 EBV LMP2A CLGGLLTMV effector memory T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*02:01 B2M MHCI -13341 chip0516_700353 7.15 10.42 Chip4 healthy_9 healthy TGTGCCTGGAGCCGATTTGGGGGCTTCGGCTATGGCTACACCTTC CAWSRFGGFGYGYTF TRBV30*01 TRBJ1-2*01 1.0 13.0 _CAWSRFGGFGYGYTF 1 4045 PB1-590-599 FLU 0.48 37 PB1-590-599 109 3936 7 InfluenzaA PB1 LVSDGGPNLY transitional T cells between effector and memory populations PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*01:01 B2M MHCI -13342 chip0516_775986 7.53 13.48 Chip4 healthy_6 healthy TGCAGCGTTGAAATTGGGGGGTACAATGAGCAGTTCTTC CSVEIGGYNEQFF TRBV29-1*01 TRBJ2-1*01 153.0 15044.0 _CSVEIGGYNEQFF 3 3781 ROTA-VP2-1 ROTA 0.94 17 ROTA-VP2-1 107 3674 7 RotavirusA VP2 SLISGMWLL transitional T cells between effector and memory populations PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*02:01 B2M MHCI -13343 chip0516_696791 8.33 10.77 Chip4 healthy_8 healthy TGTGCTGTGACCCTTACCCTCTACTCTGGGGCTGGGAGTTACCAACTCACTTTC CAVTLTLYSGAGSYQLTF TRAV21*01 TRAJ28*01 31.0 1991.0 TGTGCCAGCAGTTTAATGGGGACAGGGGGCTTGAGTGAAAAACTGTTTTTT CASSLMGTGGLSEKLFF TRBV28*01 TRBJ1-4*01 18.0 958.0 CAVTLTLYSGAGSYQLTF_CASSLMGTGGLSEKLFF 19 7195 EBNA3A-158-166 EBV 0.68 444 EBNA3A-158-166 110 7085 7 EBV EBNA3A QAKWRLQTL transitional T cells between effector and memory populations PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-B*08:01 B2M MHCI -13344 chip0516_489389 -2.2 13.24 Chip4 healthy_8 healthy TGTGCCAGCAGCCGAGAGGGGTGGGAGCAGTACTTC CASSREGWEQYF TRBV7-9*01 TRBJ2-7*01 6.0 465.0 _CASSREGWEQYF 1 4374 NP140-148 FLU 0.62 102 NEG 112 4262 1 InfluenzaA NP HSNLNDATY Naive T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*01:01 B2M MHCI -13345 chip0516_463770 10.45 10.45 Chip4 healthy_6 healthy TGTGCTGTTCTAATGGACAGCAACTATCAGTTAATCTGG CAVLMDSNYQLIW TRAV12-3*01 TRAJ33*01 19.0 839.0 CAVLMDSNYQLIW_ 20 4618 EBV-LMP2A EBV 0.92 700 EBV-LMP2A 98 4520 9 EBV LMP2A CLGGLLTMV effector memory T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*02:01 B2M MHCI -13346 chip0516_284174 7.14 12.1 Chip4 healthy_8 healthy _ 6746 5528 NP44-52 FLU 0.92 474 NP44-52 127 5401 7 InfluenzaA NP CTELKLSDY transitional T cells between effector and memory populations PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*01:01 B2M MHCI -13347 chip0516_80389 9.88 9.93 Chip4 healthy_8 healthy TGTGCCAGCAGCACCCAGACAGCGCCTGATGATACGCAGTATTTT CASSTQTAPDDTQYF TRBV7-9*01 TRBJ2-3*01 55.0 2932.0 _CASSTQTAPDDTQYF 5 5518 BZLF1-190-197 EBV 0.74 2156 BZLF1-190-197 136 5382 9 EBV BZLF1 RAKFKQLL effector memory T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-B*08:01 B2M MHCI -13348 chip0516_681478 6.33 12.78 Chip4 healthy_8 healthy TGTGCCAGTAGTCTCGTGGGGGGAGAAGCTTTCTTT CASSLVGGEAFF TRBV19*01 TRBJ1-1*01 16.0 1495.0 _CASSLVGGEAFF 1 6097 NP30-38 FLU 0.86 72 NP30-38 130 5967 7 InfluenzaA NP RPIIRPATL transitional T cells between effector and memory populations PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-B*08:01 B2M MHCI -13349 chip0516_363286 12.37 13.38 Chip4 healthy_6 healthy TGCGCCAGCAGCGGGGACGGAATGAACACTGAAGCTTTCTTT CASSGDGMNTEAFF TRBV10-2*01 TRBJ1-1*01 7.0 286.0 _CASSGDGMNTEAFF 131 3284 EBV-LMP2A EBV 1.0 700 NEG 128 3156 11 EBV LMP2A CLGGLLTMV effector T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*02:01 B2M MHCI -13350 chip0516_493678 -3.76 9.99 Chip4 healthy_9 healthy TGTGCTCTGAGTGAACCGTATTCAGGAGGAGGTGCTGACGGACTCACCTTT CALSEPYSGGGADGLTF TRAV19*01 TRAJ45*01 4.0 214.0 TGTGCCAGCAGCCTAGCGGGGGGCGGCACAGATACGCAGTATTTT CASSLAGGGTDTQYF TRBV7-2*01 TRBJ2-3*01 12.0 574.0 CALSEPYSGGGADGLTF_CASSLAGGGTDTQYF 1 5012 EBNA3A-158-166 EBV 0.63 444 NEG 113 4899 2 EBV EBNA3A QAKWRLQTL Naive T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-B*08:01 B2M MHCI -13351 chip0516_610637 10.58 10.37 Chip4 healthy_6 healthy TGTGCTGTGGCCCTCTCAAGCAAATCAACCTTT CAVALSSKSTF TRAV8-3*01 TRAJ27*01 1.0 41.0 TGCGCCCGCAGCGGGGCCGGAATGAACACTGAAGCTTTCTTT CARSGAGMNTEAFF TRBV10-2*01 TRBJ1-1*01 10.0 75.0 CAVALSSKSTF_CARSGAGMNTEAFF 1 5950 EBV-LMP2A EBV 0.91 700 EBV-LMP2A 137 5813 9 EBV LMP2A CLGGLLTMV effector memory T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*02:01 B2M MHCI -13352 chip0516_191454 -4.22 10.96 Chip4 healthy_7 healthy TGCGACAGCAACCAAAACGAGGGACAGGTGGATTACGAGCAGCACTTC CDSNQNEGQVDYEQHF TRBV4-1*01 TRBJ2-7*01 2.0 201.0 _CDSNQNEGQVDYEQHF 1 4435 M1 FLU 0.92 1250 NEG 117 4318 2 InfluenzaA M1 GILGFVFTL Naive T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*02:01 B2M MHCI -13353 chip0516_241802 0.32 8.75 Chip4 healthy_9 healthy TGCAAAGCTACTTGGATAGTTACAATGAGCAGATCTTC CKATWIg?tYNEQIF TRBV20-1*01 TRBJ2-1*01 6.0 1040.0 _CKATWIg?tYNEQIF 1 6272 GAD2-MMI-8 GAD65 0.79 40 GAD2-MMI-8 141 6131 4 HomoSapiens GAD2 MMIARFKM Naive T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-B*08:01 B2M MHCI -13354 chip0516_458494 11.83 8.1 Chip4 healthy_6 healthy TGTGCTGTTCTAATGGATAGCAACTATCAGTTAATCTGG CAVLMDSNYQLIW TRAV12-3*01 TRAJ33*01 16.0 1091.0 TGCGCCAGCAGCGGGGACGGAATGAACACTGAAGCTTTCTTT CASSGDGMNTEAFF TRBV10-2*01 TRBJ1-1*01 13.0 582.0 CAVLMDSNYQLIW_CASSGDGMNTEAFF 20 4346 EBV-LMP2A EBV 0.86 700 EBV-LMP2A 134 4212 10 EBV LMP2A CLGGLLTMV effector memory T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*02:01 B2M MHCI -13355 chip0516_843773 11.24 6.82 Chip4 healthy_8 healthy TGCATCCTGCCCCTTGCTGGTGGTACTAGCTTTGGACAGCTGACCTTT CILPLAGGTSFGQLTF TRAV26-2*01 TRAJ52*01 32.0 1967.0 TGTGCCAGCAGCTTAGGACAGGCCTACGAGCAGTACTTC CASSLGQAYEQYF TRBV7-8*01 TRBJ2-7*01 11.0 527.0 CILPLAGGTSFGQLTF_CASSLGQAYEQYF 1 6841 EBNA3A-193-201 EBV 0.76 1022 EBNA3A-193-201 115 6726 6 EBV EBNA3A FLRGRAYGL central memory T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-B*08:01 B2M MHCI -13356 chip0516_624168 6.93 13.09 Chip4 healthy_8 healthy _ 6746 3894 NP30-38 FLU 0.75 72 NP30-38 96 3798 7 InfluenzaA NP RPIIRPATL transitional T cells between effector and memory populations PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-B*08:01 B2M MHCI -13357 chip0516_427566 -3.08 8.09 Chip4 healthy_6 healthy TGTGCAGCAGGCTCGTACAACTTCAACAAATTTTACTTT CAAGSYNFNKFYF TRAV13-1*01 TRAJ21*01 1.0 143.0 CAAGSYNFNKFYF_ 1 7379 ROTA-VP3 ROTA 1.0 41 NEG 112 7267 2 RotavirusA VP3 YLLPGWKL Naive T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*02:01 B2M MHCI -13358 chip0516_147043 5.58 13.06 Chip4 healthy_7 healthy _ 6746 6059 M1 FLU 1.0 1250 M1 109 5950 7 InfluenzaA M1 GILGFVFTL transitional T cells between effector and memory populations PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*02:01 B2M MHCI -13359 chip0516_444350 9.22 10.2 Chip4 healthy_6 healthy _ 6746 7711 EBV-LMP2A EBV 0.91 700 EBV-LMP2A 130 7581 8 EBV LMP2A CLGGLLTMV effector memory T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*02:01 B2M MHCI -13360 chip0516_817117 10.6 11.54 Chip4 healthy_6 healthy TGCGCCAGCAGCGGGGACGGAATGAACACTGAAGCTTTCTTT CASSGDGMNTEAFF TRBV10-2*01 TRBJ1-1*01 12.0 543.0 _CASSGDGMNTEAFF 131 4819 EBV-LMP2A EBV 0.96 700 EBV-LMP2A 95 4724 9 EBV LMP2A CLGGLLTMV effector memory T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*02:01 B2M MHCI -13361 chip0516_656156 -3.45 10.64 Chip4 healthy_8 healthy TGTGCAGAGAATGAAGGTGTGGGAAACACACCTCTTGTCTTT CAENEGVGNTPLVF TRAV13-2*01 TRAJ29*01 18.0 1059.0 TGTGCCAGCACTCCGGGACGGAAAGATGAAAAACTGTTTTTT CASTPGRKDEKLFF TRBV2*01 TRBJ1-4*01 16.0 999.0 CAENEGVGNTPLVF_CASTPGRKDEKLFF 1 6120 GFAP-HLK-8 GFAP 0.86 28 GFAP-HLK-8 141 5979 2 HomoSapiens GFAP HLKRNIVV Naive T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-B*08:01 B2M MHCI -13362 chip0516_482760 6.73 13.77 Chip4 healthy_6 healthy TGTGCAGCAAGAAACACCAATGCAGGCAAATCAACCTTT CAARNTNAGKSTF TRAV13-1*01 TRAJ27*01 38.0 2419.0 TGTGCCAGCAGTTACACCGCAAAGACAGATACTAGCAATCAGCCCCAGCATTTT CASSYTAKTDTSNQPQHF TRBV6-2*01,TRBV6-3*01 TRBJ1-5*01 16.0 624.0 CAARNTNAGKSTF_CASSYTAKTDTSNQPQHF 1 4578 M1 FLU 0.94 1250 M1 106 4472 7 InfluenzaA M1 GILGFVFTL transitional T cells between effector and memory populations PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*02:01 B2M MHCI -13363 chip0516_377682 5.94 12.46 Chip4 healthy_6 healthy _ 6746 5033 EBV-LMP1-1 EBV 0.86 237 EBV-LMP1-1 120 4913 7 EBV LMP1 YLLEMLWRL transitional T cells between effector and memory populations PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*02:01 B2M MHCI -13364 chip0516_128321 15.06 8.81 Chip4 healthy_9 healthy TGTGCTACGGTCTTGGGCTTATACTCTGGGGCTGGGAGTTACCAACTCACTTTC CATVLGLYSGAGSYQLTF TRAV17*01 TRAJ28*01 32.0 1034.0 TGTGCCAGCAGCGATCTGGGGGCAGCTACTTTCACAGATACGCAGTATTTT CASSDLGAATFTDTQYF TRBV28*01 TRBJ2-3*01 13.0 901.0 CATVLGLYSGAGSYQLTF_CASSDLGAATFTDTQYF 1 2988 EBNA3A-158-166 EBV 0.57 444 EBNA3A-158-166 99 2889 12 EBV EBNA3A QAKWRLQTL effector T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-B*08:01 B2M MHCI -13365 chip0516_49289 -2.53 7.89 Chip4 healthy_8 healthy TGTGCTGTGAGAGGGGCACACCGACCAGCTCCTCTTT CAVRGA??cTDQLLF TRAV1-2*01 TRAJ34*01 15.0 1099.0 CAVRGA??cTDQLLF_ 1 8192 GAD2-MMI-8 GAD65 0.91 40 GAD2-MMI-8 112 8080 2 HomoSapiens GAD2 MMIARFKM Naive T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-B*08:01 B2M MHCI -13366 chip0516_657474 11.2 9.88 Chip4 healthy_6 healthy TGTGCTGTTCTAATGGATAGCAACTATCAGTTAATCTGG CAVLMDSNYQLIW TRAV21*01 TRAJ33*01 21.0 1203.0 CAVLMDSNYQLIW_ 20 5072 EBV-LMP2A EBV 0.9 700 EBV-LMP2A 112 4960 9 EBV LMP2A CLGGLLTMV effector memory T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*02:01 B2M MHCI -13367 chip0516_284788 5.93 12.61 Chip4 healthy_8 healthy _ 6746 6219 NP44-52 FLU 0.87 474 NP44-52 134 6085 7 InfluenzaA NP CTELKLSDY transitional T cells between effector and memory populations PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*01:01 B2M MHCI -13368 chip0516_239106 -2.92 13.93 Chip4 healthy_7 healthy _ 6746 2936 ZNT8-145-153 ZNT8 1.0 14 ZNT8-145-153 104 2832 1 HomoSapiens ZNT8 LLSILCIWV Naive T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*02:01 B2M MHCI -13369 chip0516_833229 -1.42 9.56 Chip4 healthy_6 healthy TGTGCCAGCAGTACACTAGCGGGAGGGCAAGATACGCAGTATTTT CASSTLAGGQDTQYF TRBV6-1*01 TRBJ2-3*01 14.0 418.0 _CASSTLAGGQDTQYF 1 6248 IAPP-5-13 IAPP 1.0 30 NEG 134 6114 3 HomoSapiens IAPP KLQVFLIVL Naive T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*02:01 B2M MHCI -13370 chip0516_738901 15.19 12.31 Chip4 healthy_8 healthy TGTGCCGTGATCACGTACTCTGGGCTGGGAGTTACCCGCTCCCTTTC CAVITYSgg?AGSYPLPF TRAV12-2*01 TRAJ28*01 10.0 573.0 CAVITYSgg?AGSYPLPF_ 1 3738 BZLF1-190-197 EBV 0.89 2156 BZLF1-190-197 135 3603 12 EBV BZLF1 RAKFKQLL effector T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-B*08:01 B2M MHCI -13371 chip0516_224941 10.32 8.25 Chip4 healthy_6 healthy TGCGCCAGCAGCGGGGACGGAATGAACACTGAAGCTTTCTTT CASSGDGMNTEAFF TRBV10-2*01 TRBJ1-1*01 22.0 1675.0 _CASSGDGMNTEAFF 131 6724 EBV-LMP2A EBV 1.0 700 EBV-LMP2A 125 6599 10 EBV LMP2A CLGGLLTMV effector memory T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*02:01 B2M MHCI -13372 chip0516_184609 0.35 8.78 Chip4 healthy_7 healthy TGCAGTGCTACGCCGGGACTAGTTGGCGACGAGCAGTACTTC CSATPGLVGDEQYF TRBV20-1*01 TRBJ2-7*01 20.0 1497.0 _CSATPGLVGDEQYF 1 5396 MART1-ALA MART1 0.91 269 NEG 112 5284 4 HomoSapiens MART1 ALAGIGILTV Naive T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*02:01 B2M MHCI -13373 chip0516_332073 -2.89 8.67 Chip4 healthy_7 healthy TGTGCAATGAGCCTGTCTAACTTTGGAAATGAGAAATTAACCTTT CAMSLSNFGNEKLTF TRAV12-3*01 TRAJ48*01 31.0 819.0 TGCAGTGCTAGAGATCGGGTTAATCAGCCCCAGCATTTT CSARDRVNQPQHF TRBV20-1*01 TRBJ1-5*01 28.0 1833.0 CAMSLSNFGNEKLTF_CSARDRVNQPQHF 1 5400 PGT-178 PGT 0.91 1480 PGT-178 110 5290 2 HomoSapiens PGT LLAGIGTVPI Naive T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*02:01 B2M MHCI -13374 chip0516_778601 12.33 7.3 Chip4 healthy_8 healthy TGCATCCTGCCCCTTGCTGGTGGTACTAGCTATGGAAAGCTGACATTT CILPLAGGTSYGKLTF TRAV26-2*01 TRAJ52*01 31.0 2135.0 CILPLAGGTSYGKLTF_ 55 4495 EBNA3A-193-201 EBV 0.61 1022 EBNA3A-193-201 133 4362 10 EBV EBNA3A FLRGRAYGL effector memory T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-B*08:01 B2M MHCI -13375 chip0516_623886 10.8 7.02 Chip4 healthy_8 healthy TGCATCCTGCCCCTTGCTGGTGGTACTAGCTATGGAAAGCTGACATTT CILPLAGGTSYGKLTF TRAV26-2*01 TRAJ52*01 1.0 36.0 TGTGCCAGCAGCTTAGGACAGGCCTACGAGCAGTACTTC CASSLGQAYEQYF TRBV7-8*01 TRBJ2-7*01 13.0 719.0 CILPLAGGTSYGKLTF_CASSLGQAYEQYF 308 6613 EBNA3A-193-201 EBV 0.77 1022 EBNA3A-193-201 137 6476 10 EBV EBNA3A FLRGRAYGL effector memory T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-B*08:01 B2M MHCI -13376 chip0516_189129 -1.66 10.56 Chip4 healthy_8 healthy TGTGCCTCCCTGAGGACTAGCTATGGAAAGCTGACATTT CASLRTSYGKLTF TRAV21*01 TRAJ52*01 53.0 4533.0 TGTGCAATGAGCGGAGGGGGCAATGAGAAATTAACCTTT CAMSGGGNEKLTF TRAV12-3*01 TRAJ48*01 47.0 3529.0 0.38 CASLRTSYGKLTF_ 1 5042 gp160-586-593 HIV 1.0 30 gp160-586-593 98 4944 3 HIV-1 gp160 YLKDQQLL Naive T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-B*08:01 B2M MHCI -13377 chip0516_166453 8.29 10.26 Chip4 healthy_8 healthy TGTGCCATCAGTGACGCAGTTCACAACACTGAAGCTTTCTTT CAISDAVHNTEAFF TRBV10-3*01 TRBJ1-1*01 36.0 2814.0 _CAISDAVHNTEAFF 1 6191 BZLF1-190-197 EBV 0.84 2156 BZLF1-190-197 132 6059 8 EBV BZLF1 RAKFKQLL effector memory T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-B*08:01 B2M MHCI -13378 chip0516_583582 10.74 9.67 Chip4 healthy_8 healthy TGCATCCTGCCCCTTGCTGGTGGTGCTAGCTATGGAAAGCTGACATTT CILPLAGGASYGKLTF TRAV26-2*01 TRAJ52*01 37.0 1560.0 TGTGCCAGCAGCTTAGGACAGGCCTACGAGCAGTACTTC CASSLGQAYEQYF TRBV7-8*01 TRBJ2-7*01 27.0 1714.0 CILPLAGGASYGKLTF_CASSLGQAYEQYF 2 6110 EBNA3A-193-201 EBV 0.84 1022 EBNA3A-193-201 138 5972 9 EBV EBNA3A FLRGRAYGL effector memory T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-B*08:01 B2M MHCI -13379 chip0516_190114 5.6 9.11 Chip4 healthy_6 healthy TGTGCCAGCAGTTACCTGGGGGGGGGTTTTGGCTACACCTTC CASSYLGGGFGYTF TRBV6-5*01 TRBJ1-2*01 9.0 883.0 _CASSYLGGGFGYTF 3 6755 EBV-LMP2-FLY EBV 1.0 355 NEG 119 6636 6 EBV LMP2 FLYALALLL central memory T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*02:01 B2M MHCI -13380 chip0516_593505 -0.98 10.45 Chip4 healthy_7 healthy TGTGCCAGCACCTATAGCGGGAGGGTACCGGTGGGTTCCTACGAGCAGTACTTC CASTYSGRVPVGSYEQYF TRBV6-2*01,TRBV6-3*01 TRBJ2-7*01 29.0 1679.0 _CASTYSGRVPVGSYEQYF 1 5821 PTPRN-482-490 PTPRN 0.5 10 NEG 144 5677 3 HomoSapiens PTPRN SLAAGVKLL Naive T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*02:01 B2M MHCI -13381 chip0516_39827 10.17 9.18 Chip4 healthy_9 healthy TGTGCTGTGGGTGAGGACAGACTCATGTTT CAVGEDRLMF TRAV8-3*01 TRAJ31*01 3.0 461.0 TGCGCCAGCAGCCCATCGAATGGGGCCGGTGGCTACACCTTC CASSPSNGAGGYTF TRBV4-1*01 TRBJ1-2*01 18.0 1282.0 CAVGEDRLMF_CASSPSNGAGGYTF 2 4810 BZLF1-190-197 EBV 0.82 2156 BZLF1-190-197 138 4672 8 EBV BZLF1 RAKFKQLL effector memory T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-B*08:01 B2M MHCI -13382 chip0516_431633 10.72 6.8 Chip4 healthy_8 healthy _ 6746 6492 EBNA3A-193-201 EBV 0.76 1022 EBNA3A-193-201 144 6348 10 EBV EBNA3A FLRGRAYGL effector memory T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-B*08:01 B2M MHCI -13383 chip0516_399062 5.86 12.08 Chip4 healthy_8 healthy TGTGCAATGAGAGCGGCCGGGTACTCTGGGGCTGGGAGTTACCAACTCACTTTC CAMRAAGYSGAGSYQLTF TRAV14/DV4*01 TRAJ28*01 3.0 48.0 CAMRAAGYSGAGSYQLTF_ 1 6038 NP30-38 FLU 0.54 72 NEG 132 5906 7 InfluenzaA NP RPIIRPATL transitional T cells between effector and memory populations PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-B*08:01 B2M MHCI -13384 chip0516_389071 10.41 13.68 Chip4 healthy_9 healthy TGTGCAGAGAATTGGAGGTCTGGGGCTGGGAGTTACCAACTCACTTTC CAENWRSGAGSYQLTF TRAV13-2*01 TRAJ28*01 20.0 1216.0 CAENWRSGAGSYQLTF_ 1 2703 NP44-52 FLU 0.83 474 NP44-52 98 2605 11 InfluenzaA NP CTELKLSDY effector T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*01:01 B2M MHCI -13385 chip0516_106737 11.57 12.8 Chip4 healthy_9 healthy _ 6746 2910 ZNT8-VTD-9 ZNT8 0.88 65 ZNT8-VTD-9 111 2799 11 HomoSapiens ZNT8 VTDAAHLLI effector T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*01:01 B2M MHCI -13386 chip0516_714740 10.83 11.12 Chip4 healthy_6 healthy TGTGCTGTGGCCCTCTCAAGCAAATCAACCTTT CAVALSSKSTF TRAV8-3*01 TRAJ27*01 1.0 51.0 TGCGCCAGCAGCGGGGACGGAATGAACACTGAAGCTTTCTTT CASSGDGMNTEAFF TRBV10-2*01 TRBJ1-1*01 20.0 1154.0 CAVALSSKSTF_CASSGDGMNTEAFF 50 3947 EBV-LMP2A EBV 0.94 700 EBV-LMP2A 130 3817 9 EBV LMP2A CLGGLLTMV effector memory T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*02:01 B2M MHCI -13387 chip0516_825964 5.16 12.26 Chip4 healthy_7 healthy TGTGCTTATCATATGAATGCTGGTGGTACTAGCTATGGAAAGCTGACATTT CAYHMNAGGTSYGKLTF TRAV38-2/DV8*01 TRAJ52*01 7.0 205.0 TGTGCCAGTAGTATTGGGGTGTATGGCTACACCTTC CASSIGVYGYTF TRBV19*01 TRBJ1-2*01 9.0 621.0 CAYHMNAGGTSYGKLTF_CASSIGVYGYTF 1 4593 M1 FLU 0.76 1250 M1 109 4484 6 InfluenzaA M1 GILGFVFTL central memory T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*02:01 B2M MHCI -13388 chip0516_742665 -1.26 10.14 Chip4 healthy_9 healthy TGCGCCAGCAGGCTAGCGGAAGATGAGCAGTTCTTC CASRLAEDEQFF TRBV5-1*01 TRBJ2-1*01 27.0 2426.0 _CASRLAEDEQFF 1 5532 ZNT8-YAK-9 ZNT8 0.49 59 ZNT8-YAK-9 118 5414 3 HomoSapiens ZNT8 YAKWKLCSA Naive T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-B*08:01 B2M MHCI -13389 chip0516_737981 11.24 9.71 Chip4 healthy_8 healthy TGCATCCTGCCCCTTGCTGGTGGTACTAGCTATGGAAAGCTGACATTT CILPLAGGTSYGKLTF TRAV26-2*01 TRAJ52*01 1.0 24.0 CILPLAGGTSYGKLTF_ 55 7955 EBNA3A-193-201 EBV 0.8 1022 EBNA3A-193-201 127 7828 9 EBV EBNA3A FLRGRAYGL effector memory T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-B*08:01 B2M MHCI -13390 chip0516_303717 11.16 8.07 Chip4 healthy_8 healthy TGTGCCGTGAAGACGGACACCAATGCAGGCAAATCAACCTTT CAVKTDTNAGKSTF TRAV12-2*01 TRAJ27*01 31.0 1776.0 TGTGCCAGCAGTGACTCGATAGGGTTTAATTCACCCCTCCACTTT CASSDSIGFNSPLHF TRBV6-4*01 TRBJ1-6*01 14.0 675.0 CAVKTDTNAGKSTF_CASSDSIGFNSPLHF 3 5258 EBNA3A-193-201 EBV 0.72 1022 EBNA3A-193-201 118 5140 10 EBV EBNA3A FLRGRAYGL effector memory T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-B*08:01 B2M MHCI -13391 chip0516_209158 -3.39 8.67 Chip4 healthy_7 healthy TGTGCCAGCACCCCGACCCCGGGGGGGGAGCTGTTTTTT CASTPTPGGELFF TRBV11-3*01 TRBJ2-2*01 13.0 729.0 _CASTPTPGGELFF 1 5959 ZNT8-153-161 ZNT8 0.95 41 ZNT8-153-161 145 5814 2 HomoSapiens ZNT8 VVTGVLVYL Naive T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*02:01 B2M MHCI -13392 chip0516_810004 -3.79 12.07 Chip4 healthy_10 healthy TGTGCTGTGCCGAAGGGAGCAGTGCTTCCAAGATAATCTTT CAVPKGgc?SASKIIF TRAV2*01 TRAJ3*01 25.0 1733.0 CAVPKGgc?SASKIIF_ 1 3985 G6PC2-NLI-8 IGRP 0.8 32 G6PC2-NLI-8 123 3862 1 HomoSapiens G6PC2 NLIFKWIL Naive T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-B*08:01 B2M MHCI -13393 chip0516_734209 12.2 8.77 Chip4 healthy_8 healthy TGCATCCTGCCCCTTGCTGGTGGTACTAGCTATGGAAAGCTGACATTT CILPLAGGTSYGKLTF TRAV26-2*01 TRAJ52*01 62.0 3753.0 TGTGCCAGCAGCTTAGGACAGGCCTACGAGCAGTACTTC CASSLGQAYEQYF TRBV7-8*01 TRBJ2-7*01 6.0 403.0 CILPLAGGTSYGKLTF_CASSLGQAYEQYF 308 4000 EBNA3A-193-201 EBV 0.71 1022 EBNA3A-193-201 139 3861 10 EBV EBNA3A FLRGRAYGL effector memory T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-B*08:01 B2M MHCI -13394 chip0516_618191 11.31 10.96 Chip4 healthy_6 healthy TGCGCCAGCAGCGGGGACGGAATGAACACTGAAGCTTTCTTT CASSGDGMNTEAFF TRBV10-2*01 TRBJ1-1*01 17.0 1128.0 _CASSGDGMNTEAFF 131 4396 EBV-LMP2A EBV 0.88 700 EBV-LMP2A 107 4289 9 EBV LMP2A CLGGLLTMV effector memory T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*02:01 B2M MHCI -13395 chip0516_193776 7.11 10.92 Chip4 healthy_9 healthy TGCGCCAGCAGCCAAGAAATTGGCAATGAGCAGTTCTTC CASSQEIGNEQFF TRBV4-1*01 TRBJ2-1*01 23.0 2005.0 _CASSQEIGNEQFF 1 6683 EBNA3A-158-166 EBV 0.64 444 EBNA3A-158-166 131 6552 7 EBV EBNA3A QAKWRLQTL transitional T cells between effector and memory populations PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-B*08:01 B2M MHCI -13396 chip0516_659890 -3.08 7.73 Chip4 healthy_7 healthy TGTGCAATGAGCGCGTCTAACTTTGGAAATGAGAAATTAACCTTT CAMSASNFGNEKLTF TRAV12-3*01 TRAJ48*01 79.0 2981.0 TGTGCCAGCAGTTCCGACACGCTGATCGTCGATGAGCAGTTCTTC CASSSDTLIVDEQFF TRBV7-9*01 TRBJ2-1*01 26.0 2266.0 CAMSASNFGNEKLTF_CASSSDTLIVDEQFF 1 6236 PGT-178 PGT 0.56 1480 PGT-178 124 6112 2 HomoSapiens PGT LLAGIGTVPI Naive T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*02:01 B2M MHCI -13397 chip0516_250285 11.75 7.4 Chip4 healthy_8 healthy _ 6746 4971 EBNA3A-193-201 EBV 0.83 1022 EBNA3A-193-201 112 4859 10 EBV EBNA3A FLRGRAYGL effector memory T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-B*08:01 B2M MHCI -13398 chip0516_71419 -1.26 7.97 Chip4 healthy_8 healthy TGTGCTCCCCGAGCCCTTATGCAGCCAGGATGCTCCCCTTT CAPRALat?AARMLPF TRAV9-2*01 TRAJ39*01 3.0 251.0 CAPRALat?AARMLPF_ 1 8043 BZLF1-190-197 EBV 0.43 2156 BZLF1-190-197 128 7915 3 EBV BZLF1 RAKFKQLL Naive T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-B*08:01 B2M MHCI -13399 chip0516_844357 10.26 9.07 Chip4 healthy_6 healthy TGTGCTGTGGCCCTCTCAAGCAAATCAACCTTT CAVALSSKSTF TRAV8-3*01 TRAJ27*01 4.0 176.0 TGCGCCAGCAGCGGGGACGGAATGAACACTGAAGCTTTCTTT CASSGDGMNTEAFF TRBV10-2*01 TRBJ1-1*01 21.0 1193.0 CAVALSSKSTF_CASSGDGMNTEAFF 50 5937 EBV-LMP2A EBV 0.93 700 EBV-LMP2A 154 5783 10 EBV LMP2A CLGGLLTMV effector memory T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*02:01 B2M MHCI -13400 chip0516_54608 -3.55 8.56 Chip4 healthy_8 healthy TGTGCCAGCAGCTTTTCGGAGTGGACCGGCTACACCTTC CASSFSEWTGYTF TRBV5-4*01 TRBJ1-2*01 12.0 716.0 _CASSFSEWTGYTF 1 5406 INS-MAL-8 INS 0.62 38 INS-MAL-8 104 5302 2 HomoSapiens INS MALWMRLL Naive T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-B*08:01 B2M MHCI -13401 chip0516_553988 6.65 11.7 Chip4 healthy_6 healthy TGTGCCGTGAAGGACACCGACAAGCTCATCTCT CAVKDTDKLIS TRAV8-1*01 TRAJ34*01 8.0 640.0 TGTGCCAGCAGCCAAGATTACACCTGGGGGAACACTGAAGCTTTCTTT CASSQDYTWGNTEAFF TRBV14*01 TRBJ1-1*01 16.0 479.0 CAVKDTDKLIS_CASSQDYTWGNTEAFF 1 6508 EBV-BRLF1 EBV 0.96 1264 EBV-BRLF1 146 6362 7 EBV BRLF1 YVLDHLIVV transitional T cells between effector and memory populations PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*02:01 B2M MHCI -13402 chip0516_119980 6.63 10.31 Chip4 healthy_8 healthy TGCATCCTGCCCCTTGCTGGTGGTACTAGCTATGGAAAGCTGACATTT CILPLAGGTSYGKLTF TRAV26-2*01 TRAJ52*01 34.0 2118.0 TGTGCCAGCAGCTTAGGACAGGCCTACGAGCAGTACTTC CASSLGQAYEQYF TRBV7-8*01 TRBJ2-7*01 19.0 1528.0 CILPLAGGTSYGKLTF_CASSLGQAYEQYF 308 7324 EBNA3A-193-201 EBV 0.91 1022 EBNA3A-193-201 124 7200 6 EBV EBNA3A FLRGRAYGL central memory T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-B*08:01 B2M MHCI -13403 chip0516_808343 12.06 8.82 Chip4 healthy_8 healthy TGTGCCAGCAGCTTAGGACAGGCCTACGAGCAGTACTTC CASSLGQAYEQYF TRBV7-8*01 TRBJ2-7*01 1.0 217.0 _CASSLGQAYEQYF 175 4348 EBNA3A-193-201 EBV 0.95 1022 EBNA3A-193-201 115 4233 10 EBV EBNA3A FLRGRAYGL effector memory T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-B*08:01 B2M MHCI -13404 chip0516_1802 -3.05 10.35 Chip4 healthy_8 healthy TGTGCTGTGAGAAACGACTACAAGCTCAGCTTT CAVRNDYKLSF TRAV1-2*01 TRAJ20*01 13.0 1529.0 TGTGCCAGCACTTTAGGGGGACAGGGTCGCCACGAGCAGTTCTTC CASTLGGQGRHEQFF TRBV27*01 TRBJ2-1*01 22.0 1605.0 CAVRNDYKLSF_CASTLGGQGRHEQFF 1 6843 NP30-38 FLU 0.55 72 NEG 121 6722 4 InfluenzaA NP RPIIRPATL Naive T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-B*08:01 B2M MHCI -13405 chip0516_719260 4.95 9.59 Chip4 healthy_8 healthy TGCGCCAGCAGCTACGAGACGGTGAACACTGAAGCTTTCTTT CASSYETVNTEAFF TRBV4-3*01 TRBJ1-1*01 29.0 1961.0 _CASSYETVNTEAFF 1 4643 PB1-590-599 FLU 0.56 37 PB1-590-599 110 4533 6 InfluenzaA PB1 LVSDGGPNLY central memory T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*01:01 B2M MHCI -13406 chip0516_325855 -0.21 9.18 Chip4 healthy_9 healthy TGTGCCAGCAGTGAGTGGCAGGGGGAAAATACGCAGTATTTT CASSEWQGENTQYF TRBV6-1*01 TRBJ2-3*01 2.0 26.0 _CASSEWQGENTQYF 1 5084 EBNA3A-158-166 EBV 0.59 444 EBNA3A-158-166 104 4980 4 EBV EBNA3A QAKWRLQTL Naive T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-B*08:01 B2M MHCI -13407 chip0516_614385 5.5 8.98 Chip4 healthy_6 healthy TGTGCCGTGATCAGCATCCTGGAGGCTTCAAAACTATCTTT CAVISIct?GGFKTIF TRAV8-1*01 TRAJ9*01 9.0 576.0 CAVISIct?GGFKTIF_ 1 5780 EBV-LMP2-FLY EBV 0.86 355 EBV-LMP2-FLY 123 5657 6 EBV LMP2 FLYALALLL central memory T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*02:01 B2M MHCI -13408 chip0516_733547 7.88 10.96 Chip4 healthy_8 healthy TGTGCCGTGAGGACTTCAGGCTTTCAGAAACTTGTATTT CAVRTSGFQKLVF TRAV12-2*01 TRAJ8*01 53.0 4544.0 TGTGCCAGCAGTCTCAGGGAATTTCACGAGACCCAGTACTTC CASSLREFHETQYF TRBV6-1*01 TRBJ2-5*01 17.0 1143.0 CAVRTSGFQKLVF_CASSLREFHETQYF 2 6531 EBNA3A-193-201 EBV 0.95 1022 EBNA3A-193-201 116 6415 7 EBV EBNA3A FLRGRAYGL transitional T cells between effector and memory populations PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-B*08:01 B2M MHCI -13409 chip0516_521091 12.18 13.53 Chip4 healthy_8 healthy _ 6746 2446 EBNA3A-193-201 EBV 0.64 1022 EBNA3A-193-201 132 2314 11 EBV EBNA3A FLRGRAYGL effector T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-B*08:01 B2M MHCI -13410 chip0516_114338 10.36 11.58 Chip4 healthy_6 healthy TGCGCCAGCAGCGGGGACGGAATGAACACTGAAGCTTTCTTT CASSGDGMNTEAFF TRBV10-2*01 TRBJ1-1*01 31.0 1731.0 _CASSGDGMNTEAFF 131 4319 EBV-LMP2A EBV 0.96 700 EBV-LMP2A 128 4191 9 EBV LMP2A CLGGLLTMV effector memory T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*02:01 B2M MHCI -13411 chip0516_750745 10.05 10.15 Chip4 healthy_9 healthy TGCGCCAGCAGCCCATCGAATGGGGCCGGTGGCTACACCTTC CASSPSNGAGGYTF TRBV4-1*01 TRBJ1-2*01 1.0 40.0 _CASSPSNGAGGYTF 2 3982 BZLF1-190-197 EBV 0.91 2156 BZLF1-190-197 116 3866 9 EBV BZLF1 RAKFKQLL effector memory T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-B*08:01 B2M MHCI -13412 chip0516_219235 4.91 10.41 Chip4 healthy_6 healthy TGTGCCCGCCGCCCAGGGGGGGGGGGGGGCTACGAGCAGTACTTC CARRPGGGGGYEQYF TRBV4-2*01 TRBJ2-7*01 15.0 1307.0 _CARRPGGGGGYEQYF 1 4828 EBV-LMP1-2 EBV 0.92 41 NEG 127 4701 6 EBV LMP1 YLQQNWWTL central memory T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*02:01 B2M MHCI -13413 chip0516_866071 5.66 12.15 Chip4 healthy_8 healthy TGTGCCTTTAAGGCCGGTAACCAGTTCTATTTT CAFKAGNQFYF TRAV24*01 TRAJ49*01 21.0 2048.0 CAFKAGNQFYF_ 1 5161 NP140-148 FLU 0.96 102 NP140-148 121 5040 7 InfluenzaA NP HSNLNDATY transitional T cells between effector and memory populations PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*01:01 B2M MHCI -13414 chip0516_339349 -2.15 9.28 Chip4 healthy_8 healthy TGTGCTGTGAGCCGGGCTAACTTTGGAAATGAGAAATTAACCTTT CAVSRANFGNEKLTF TRAV21*01 TRAJ48*01 51.0 2197.0 TGTGCCAGTAGTATCGGTTCTAGTGAAGCTTTCTTT CASSIGSSEAFF TRBV19*01 TRBJ1-1*01 47.0 3896.0 CAVSRANFGNEKLTF_CASSIGSSEAFF 1 7225 GFAP-ALD-9 GFAP 0.69 11 GFAP-ALD-9 117 7108 3 HomoSapiens GFAP ALDIEIATY Naive T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*01:01 B2M MHCI -13415 chip0516_315548 11.35 6.68 Chip4 healthy_8 healthy TGTGCCAGCAGCTCCGGACAGGCCTACGAGCAGTACTTC CASSSGQAYEQYF TRBV7-8*01 TRBJ2-7*01 24.0 1476.0 _CASSSGQAYEQYF 49 5254 EBNA3A-193-201 EBV 0.84 1022 EBNA3A-193-201 110 5144 10 EBV EBNA3A FLRGRAYGL effector memory T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-B*08:01 B2M MHCI -13416 chip0516_738792 7.25 10.95 Chip4 healthy_8 healthy TGTGCAGCAAGTTATGGAGGAAGCCAAGGAAATCTCATCTTT CAASYGGSQGNLIF TRAV13-1*01 TRAJ42*01 20.0 1050.0 TGTGCCAGCAGCGATAGCGGGGGGGCCCGGGATGAGCAGTTCTTC CASSDSGGARDEQFF TRBV5-6*01 TRBJ2-1*01 5.0 256.0 CAASYGGSQGNLIF_CASSDSGGARDEQFF 1 8232 ZNT8-YAY-8 ZNT8 0.81 54 ZNT8-YAY-8 159 8073 7 HomoSapiens ZNT8 YAYAKWKL transitional T cells between effector and memory populations PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-B*08:01 B2M MHCI -13417 chip0516_578494 9.91 10.0 Chip4 healthy_6 healthy TGTGCTGTGGCCCTCTCAAGCAAATCAACCTTT CAVALSSKSTF TRAV8-3*01 TRAJ27*01 19.0 1207.0 TGCGCCAGCAGCGGGGACGGAATGAACACTGAAGCTTTCTTT CASSGDGMNTEAFF TRBV10-2*01 TRBJ1-1*01 24.0 1105.0 CAVALSSKSTF_CASSGDGMNTEAFF 50 5757 EBV-LMP2A EBV 0.92 700 EBV-LMP2A 143 5614 9 EBV LMP2A CLGGLLTMV effector memory T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*02:01 B2M MHCI -13418 chip0516_391166 5.65 9.04 Chip4 healthy_8 healthy TGTGTGGTGAGTCCCCGGATGGATAGCAGCTATAAATTGATCTTC CVVSPRMDSSYKLIF TRAV10*01 TRAJ12*01 3.0 41.0 CVVSPRMDSSYKLIF_ 1 7059 EBNA3A-193-201 EBV 0.91 1022 EBNA3A-193-201 132 6927 6 EBV EBNA3A FLRGRAYGL central memory T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-B*08:01 B2M MHCI -13419 chip0516_241328 -2.93 8.14 Chip4 healthy_8 healthy TGTGCAGCAAGCGCAAATGCTGGCGACAACCGTGTGCTGTTTTGG CAASANAGDNRVLFW TRAV29/DV5*01 TRAJ38*01 5.0 104.0 CAASANAGDNRVLFW_ 1 5572 ZNT8-YAY-8 ZNT8 0.82 54 ZNT8-YAY-8 115 5457 2 HomoSapiens ZNT8 YAYAKWKL Naive T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-B*08:01 B2M MHCI -13420 chip0516_163139 5.71 13.44 Chip4 healthy_8 healthy _ 6746 6657 NP30-38 FLU 0.79 72 NP30-38 118 6539 7 InfluenzaA NP RPIIRPATL transitional T cells between effector and memory populations PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-B*08:01 B2M MHCI -13421 chip0516_126168 -3.53 9.65 Chip4 healthy_6 healthy TGCCCCGTACTATGGGAACAACAGGCTCGTTTTT CPVLWga??acNRLVF TRAV4*01 TRAJ7*01 2.0 84.0 TGTGCCAGCAGTTACGCAGAGACCCAGTACTTC CASSYAETQYF TRBV28*01 TRBJ2-5*01 3.0 164.0 CPVLWga??acNRLVF_CASSYAETQYF 1 6033 MART1-ALA MART1 1.0 269 NEG 100 5933 2 HomoSapiens MART1 ALAGIGILTV Naive T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*02:01 B2M MHCI -13422 chip0516_221963 -2.14 10.84 Chip4 healthy_7 healthy TGTGCCAGTAGTATGTTCGGGGGCAATGAGCAGTTCTTC CASSMFGGNEQFF TRBV19*01 TRBJ2-1*01 28.0 1880.0 _CASSMFGGNEQFF 1 4588 M1 FLU 0.67 1250 NEG 123 4465 3 InfluenzaA M1 GILGFVFTL Naive T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*02:01 B2M MHCI -13423 chip0516_347164 -2.78 8.12 Chip4 healthy_8 healthy TGTGCTGTGGACGACCAATCTAGCAACACAGGCAAACTAATCTTT CAVDDQSSNTGKLIF TRAV2*01 TRAJ37*01 116.0 4973.0 TGCGCCAGCAGCCCCCGGGGTGGGCAGATAGATACGCAGTATTTT CASSPRGGQIDTQYF TRBV5-1*01 TRBJ2-3*01 8.0 414.0 CAVDDQSSNTGKLIF_CASSPRGGQIDTQYF 1 6906 gp160-2-10 HIV 0.94 6 gp160-2-10 124 6782 2 HIV-1 gp160 RVKEKYQHL Naive T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-B*08:01 B2M MHCI -13424 chip0516_256315 11.19 10.88 Chip4 healthy_8 healthy TGCATCCTGCCCCTTGCTGGTGGTACTAGCTCTGGCAAGCTGACATTT CILPLAGGTSSGKLTF TRAV26-2*01 TRAJ52*01 21.0 1064.0 TGTGCCAGCAGCTTAGGACAGGCCTACGAGCAGTACTTC CASSLGQAYEQYF TRBV7-8*01 TRBJ2-7*01 48.0 2360.0 CILPLAGGTSSGKLTF_CASSLGQAYEQYF 2 4644 EBNA3A-193-201 EBV 0.78 1022 EBNA3A-193-201 110 4534 9 EBV EBNA3A FLRGRAYGL effector memory T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-B*08:01 B2M MHCI -13425 chip0516_29034 -3.05 11.0 Chip4 healthy_8 healthy TGTGCAGCAAGCGATGGAGCCAATAGTAAGCTGACATTT CAASDGANSKLTF TRAV29/DV5*01 TRAJ56*01 25.0 2013.0 CAASDGANSKLTF_ 1 5084 ZNT8-PTE-9 ZNT8 0.76 18 ZNT8-PTE-9 109 4975 4 HomoSapiens ZNT8 PTEKGANEY Naive T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*01:01 B2M MHCI -13426 chip0516_754407 5.86 12.42 Chip4 healthy_8 healthy TGTGCCTTTAGAGATGACAAGATCATCTTT CAFRDDKIIF TRAV24*01 TRAJ30*01 19.0 2114.0 CAFRDDKIIF_ 1 5928 NP30-38 FLU 0.8 72 NP30-38 121 5807 7 InfluenzaA NP RPIIRPATL transitional T cells between effector and memory populations PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-B*08:01 B2M MHCI -13427 chip0516_575366 11.67 6.9 Chip4 healthy_6 healthy _ 6746 6403 EBV-LMP2A EBV 0.93 700 EBV-LMP2A 125 6278 10 EBV LMP2A CLGGLLTMV effector memory T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*02:01 B2M MHCI -13428 chip0516_556038 11.2 10.26 Chip4 healthy_6 healthy TGTGCTACGGAAGGGGCTTCAGGATACAGCACCCTCACCTTT CATEGASGYSTLTF TRAV17*01 TRAJ11*01 42.0 2272.0 CATEGASGYSTLTF_ 8 5265 EBV-LMP2-FLY EBV 0.81 355 NEG 127 5138 9 EBV LMP2 FLYALALLL effector memory T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*02:01 B2M MHCI -13429 chip0516_228884 7.48 13.36 Chip4 healthy_8 healthy TGTGCTGTGCAGGGGACAACTGACAGCTGGGGGAAATTGCAGTTT CAVQGTTDSWGKLQF TRAV20*01 TRAJ24*01 35.0 2557.0 TGCAGTGCGAGCCCCTCCCGCGGAACGAGCTCTGGAAACACCATATATTTT CSASPSRGTSSGNTIYF TRBV20-1*01 TRBJ1-3*01 30.0 1726.0 CAVQGTTDSWGKLQF_CSASPSRGTSSGNTIYF 1 3665 G6PC2-YVM-8 IGRP 0.96 8 G6PC2-YVM-8 138 3527 7 HomoSapiens G6PC2 YVMVTAAL transitional T cells between effector and memory populations PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-B*08:01 B2M MHCI -13430 chip0516_156906 -3.4 12.72 Chip4 healthy_8 healthy TGTGACAGCAGCTCTTTCAGCTCGCCTAGCACAGATACGCAGTATTTT CDSSSFSSPSTDTQYF TRBV7-8*01 TRBJ2-3*01 3.0 490.0 _CDSSSFSSPSTDTQYF 1 4998 GAD2-MMI-8 GAD65 0.62 40 GAD2-MMI-8 117 4881 1 HomoSapiens GAD2 MMIARFKM Naive T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-B*08:01 B2M MHCI -13431 chip0516_280724 10.5 10.43 Chip4 healthy_6 healthy TGTGCTGTGGCCCTCTCAAGCAAATCAACCTTT CAVALSSKSTF TRAV8-3*01 TRAJ27*01 2.0 134.0 TGCGCCAGCAGCGGGGACGGAATGAACACTGAAGCTTTCTTT CASSGDGMNTEAFF TRBV10-2*01 TRBJ1-1*01 21.0 1383.0 CAVALSSKSTF_CASSGDGMNTEAFF 50 5204 EBV-LMP2A EBV 1.0 700 EBV-LMP2A 140 5064 9 EBV LMP2A CLGGLLTMV effector memory T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*02:01 B2M MHCI -13432 chip0516_448865 -4.12 8.67 Chip4 healthy_8 healthy TGTGCAATGAGAGAGGGGGATAACTATGGTCAGAATTTTGTCTTT CAMREGDNYGQNFVF TRAV14/DV4*01 TRAJ26*01 11.0 407.0 TGTGCCAGCAGCCCAACCCCAAACTTAGGCAGCAATCAGCCCCAGCATTTT CASSPTPNLGSNQPQHF TRBV5-4*01 TRBJ1-5*01 2.0 120.0 CAMREGDNYGQNFVF_CASSPTPNLGSNQPQHF 1 5581 Pol173-181 HIV 0.46 8 Pol173-181 112 5469 2 HIV-1 Pol GPKVKQWPL Naive T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-B*08:01 B2M MHCI -13433 chip0516_203977 6.06 10.71 Chip4 healthy_6 healthy _ 6746 6623 EBV-LMP2-FLY EBV 0.93 355 EBV-LMP2-FLY 116 6507 6 EBV LMP2 FLYALALLL central memory T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*02:01 B2M MHCI -13434 chip0516_18024 11.17 9.56 Chip4 healthy_8 healthy TGCATCCTGCCCCTTGCTGGTGGTACTAGCTATGGAAAGCTGACATTT CILPLAGGTSYGKLTF TRAV26-2*01 TRAJ52*01 53.0 2937.0 TGTGCCAGCAGCTTAGGACAGGCCTACGAGCAGTACTTC CASSLGQAYEQYF TRBV7-8*01 TRBJ2-7*01 30.0 2318.0 CILPLAGGTSYGKLTF_CASSLGQAYEQYF 308 4526 EBNA3A-193-201 EBV 0.82 1022 EBNA3A-193-201 103 4423 10 EBV EBNA3A FLRGRAYGL effector memory T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-B*08:01 B2M MHCI -13435 chip0516_640663 -2.38 9.25 Chip4 healthy_9 healthy _ 6746 4932 IAPP-ILK-8 IAPP 0.67 20 NEG 122 4810 3 HomoSapiens IAPP ILKLQVFL Naive T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-B*08:01 B2M MHCI -13436 chip0516_534300 5.65 13.09 Chip4 healthy_7 healthy _ 6746 7662 M1 FLU 0.79 1250 M1 129 7533 7 InfluenzaA M1 GILGFVFTL transitional T cells between effector and memory populations PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*02:01 B2M MHCI -13437 chip0516_458019 -2.52 8.12 Chip4 healthy_8 healthy TGCGCCAGCAGCTTGGCCCTTCCCTCTGGGGCCAACGTCCTGACTTTC CASSLALPSGANVLTF TRBV5-1*01 TRBJ2-6*01 12.0 423.0 _CASSLALPSGANVLTF 1 6680 ZNT8-YAY-8 ZNT8 0.55 54 ZNT8-YAY-8 120 6560 2 HomoSapiens ZNT8 YAYAKWKL Naive T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-B*08:01 B2M MHCI -13438 chip0516_248147 12.02 6.57 Chip4 healthy_8 healthy TGCATCCTGCCCCTTGCTGGTGGTACTAGCTATGGAAAGCTGACATTT CILPLAGGTSYGKLTF TRAV26-2*01 TRAJ52*01 27.0 1395.0 TGTGCCAGCAGCTTAGGACAGGCCTACGAGCAGTACTTC CASSLGQAYEQYF TRBV7-8*01 TRBJ2-7*01 16.0 669.0 CILPLAGGTSYGKLTF_CASSLGQAYEQYF 308 9784 EBNA3A-193-201 EBV 0.72 1022 EBNA3A-193-201 130 9654 10 EBV EBNA3A FLRGRAYGL effector memory T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-B*08:01 B2M MHCI -13439 chip0516_498652 12.88 6.55 Chip4 healthy_8 healthy TGCATCCTGCCCCTTGCTGGTGGTACTAGCTATGGAAAGCTGACATTT CILPLAGGTSYGKLTF TRAV26-2*01 TRAJ52*01 31.0 1539.0 TGTGCCAGCAGCTCCGGACAGGCCTACGAGCAGTACTTC CASSSGQAYEQYF TRBV7-8*01 TRBJ2-7*01 21.0 1199.0 CILPLAGGTSYGKLTF_CASSSGQAYEQYF 40 6715 EBNA3A-193-201 EBV 0.93 1022 EBNA3A-193-201 120 6595 10 EBV EBNA3A FLRGRAYGL effector memory T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-B*08:01 B2M MHCI -13440 chip0516_711535 10.48 10.42 Chip4 healthy_6 healthy TGTGCTGTGGCCCTCTCAAGCAAATCAACCTTT CAVALSSKSTF TRAV8-3*01 TRAJ27*01 10.0 947.0 TGCGCCAGCAGCGGGGACGGAATGAACACTGAAGCTTTCTTT CASSGDGMNTEAFF TRBV10-2*01 TRBJ1-1*01 17.0 897.0 CAVALSSKSTF_CASSGDGMNTEAFF 50 5979 EBV-LMP2A EBV 1.0 700 EBV-LMP2A 132 5847 9 EBV LMP2A CLGGLLTMV effector memory T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*02:01 B2M MHCI -13441 chip0516_319605 -3.34 9.69 Chip4 healthy_6 healthy _ 6746 7608 IGRP-265-273 IGRP 0.86 34 IGRP-265-273 102 7506 2 HomoSapiens IGRP VLFGLGFAI Naive T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*02:01 B2M MHCI -13442 chip0516_195963 10.58 10.36 Chip4 healthy_6 healthy TGTGCTGTGGCCCCTCTCAAGCAAATCAACCTTT CAVAPct??caSKSTF TRAV8-3*01 TRAJ27*01 8.0 1182.0 CAVAPct??caSKSTF_ 1 5026 EBV-LMP2A EBV 0.94 700 EBV-LMP2A 121 4905 9 EBV LMP2A CLGGLLTMV effector memory T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*02:01 B2M MHCI -13443 chip0516_508129 7.29 13.48 Chip4 healthy_8 healthy _ 6746 4784 BZLF1-190-197 EBV 0.96 2156 BZLF1-190-197 108 4676 7 EBV BZLF1 RAKFKQLL transitional T cells between effector and memory populations PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-B*08:01 B2M MHCI -13444 chip0516_314559 11.15 9.06 Chip4 healthy_6 healthy TGCGCCAGCAGCGGGGACGGAATGAACACTGAAGCTTTCTTT CASSGDGMNTEAFF TRBV10-2*01 TRBJ1-1*01 8.0 197.0 _CASSGDGMNTEAFF 131 4736 EBV-LMP2A EBV 0.93 700 EBV-LMP2A 125 4611 10 EBV LMP2A CLGGLLTMV effector memory T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*02:01 B2M MHCI -13445 chip0516_468715 -4.55 9.64 Chip4 healthy_7 healthy TGTGCAATGAGTCCCTCTAACTTTGGAAATGAGAAATTAACCTTT CAMSPSNFGNEKLTF TRAV12-3*01 TRAJ48*01 15.0 393.0 CTGTGCCTGTAGTGTTCCGGGACAGGGGGCTGCTGGAAACACCATATATTTT LCL*CSGTgg??ggAAGNTIYF TRBV19*01 TRBJ1-3*01 33.0 1956.0 CAMSPSNFGNEKLTF_LCL*CSGTgg??ggAAGNTIYF 1 5156 PGT-178 PGT 0.75 1480 NEG 100 5056 2 HomoSapiens PGT LLAGIGTVPI Naive T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*02:01 B2M MHCI -13446 chip0516_636234 11.01 11.21 Chip4 healthy_6 healthy _ 6746 4685 EBV-LMP2A EBV 1.0 700 EBV-LMP2A 128 4557 9 EBV LMP2A CLGGLLTMV effector memory T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*02:01 B2M MHCI -13447 chip0516_201296 10.94 8.97 Chip4 healthy_6 healthy TGTGCTGTGGCCCTCTCAAGCAAATCAACCTTT CAVALSSKSTF TRAV8-3*01 TRAJ27*01 11.0 768.0 CAVALSSKSTF_ 58 6813 EBV-LMP2A EBV 0.97 700 EBV-LMP2A 139 6674 10 EBV LMP2A CLGGLLTMV effector memory T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*02:01 B2M MHCI -13448 chip0516_649702 8.88 9.03 Chip4 healthy_6 healthy TGCGCCAGCAGCGGGGACGGAATGAACACTGAAGCTTTCTTT CASSGDGMNTEAFF TRBV10-2*01 TRBJ1-1*01 1.0 10.0 _CASSGDGMNTEAFF 131 8739 EBV-LMP2A EBV 0.94 700 EBV-LMP2A 124 8615 8 EBV LMP2A CLGGLLTMV effector memory T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*02:01 B2M MHCI -13449 chip0516_861399 8.75 9.88 Chip4 healthy_9 healthy TGTGCCAGCAGCCCCGGGCCGCGGAACACCGGGGAGCTGTTTTTT CASSPGPRNTGELFF TRBV6-1*01 TRBJ2-2*01 14.0 413.0 _CASSPGPRNTGELFF 1 4918 GAD2-MMI-8 GAD65 0.84 40 GAD2-MMI-8 112 4806 8 HomoSapiens GAD2 MMIARFKM effector memory T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-B*08:01 B2M MHCI -13450 chip0516_196620 8.14 10.25 Chip4 healthy_8 healthy TCCATCCTGCCGCTTGCTGGTTTTGCTAGCTACGTAAATCTGACCTTT SILPLAGFASYVNLTF TRAV26-2*01 TRAJ52*01 3.0 215.0 TGTGCCAGCAGCTTAGGACAGGCCTACGAGCAGTACTTC CASSLGQAYEQYF TRBV7-8*01 TRBJ2-7*01 15.0 903.0 SILPLAGFASYVNLTF_CASSLGQAYEQYF 1 7010 EBNA3A-193-201 EBV 0.82 1022 EBNA3A-193-201 131 6879 6 EBV EBNA3A FLRGRAYGL central memory T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-B*08:01 B2M MHCI -13451 chip0516_619415 -2.11 9.4 Chip4 healthy_9 healthy TGTGCTGTAAGTAACCAGGGAGGAAAGCTTATCTTC CAVSNQGGKLIF TRAV20*01 TRAJ23*01 1.0 14.0 TGTGCCAGCAGCCTAGGTGGCGGGGAGCTGTTTTTT CASSLGGGELFF TRBV7-9*01 TRBJ2-2*01 10.0 571.0 CAVSNQGGKLIF_CASSLGGGELFF 1 6385 EBNA3A-193-201 EBV 0.49 1022 EBNA3A-193-201 128 6257 3 EBV EBNA3A FLRGRAYGL Naive T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-B*08:01 B2M MHCI -13452 chip0516_798940 -2.5 11.23 Chip4 healthy_7 healthy TGTGCCGCGTCCTCAGGATACAGCACCCTCACCTTT CAASSGYSTLTF TRAV12-2*01 TRAJ11*01 1.0 63.0 TGTGCCAGCGGATCATTAGCGGGAGCTCAAGAGACCCAGTACTTC CASGSLAGAQETQYF TRBV27*01 TRBJ2-5*01 24.0 1966.0 CAASSGYSTLTF_CASGSLAGAQETQYF 1 4442 PGT-178 PGT 0.73 1480 PGT-178 120 4322 1 HomoSapiens PGT LLAGIGTVPI Naive T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*02:01 B2M MHCI -13453 chip0516_104280 11.03 10.67 Chip4 healthy_6 healthy TGCGCCAGCAGCGGGGACGGAATGAACACTGAAGCTTTCTTT CASSGDGMNTEAFF TRBV10-2*01 TRBJ1-1*01 14.0 657.0 _CASSGDGMNTEAFF 131 5002 EBV-LMP2A EBV 0.74 700 EBV-LMP2A 136 4866 9 EBV LMP2A CLGGLLTMV effector memory T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*02:01 B2M MHCI -13454 chip0516_610179 -3.59 11.15 Chip4 healthy_8 healthy TGTGCCAGCAGCCTCCAGAGTGGGACTGAAGCTTTCTTT CASSLQSGTEAFF TRBV7-9*01 TRBJ1-1*01 51.0 2793.0 _CASSLQSGTEAFF 1 4661 ZNT8-AAK-9 ZNT8 0.54 4 NEG 117 4544 1 HomoSapiens ZNT8 AAKMYAFTL Naive T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-B*08:01 B2M MHCI -13455 chip0516_326660 -2.34 7.63 Chip4 healthy_8 healthy TGTGCTACGGACGATTATGACATGCGCTTT CATDDYDMRF TRAV17*01 TRAJ43*01 3.0 271.0 TGTGCCAGCAGCCGCGGGGGCTACAATGAGCAGTTCTTC CASSRGGYNEQFF TRBV9*01 TRBJ2-1*01 5.0 192.0 CATDDYDMRF_CASSRGGYNEQFF 1 6771 IAPP-NTY-9 IAPP 0.88 4 IAPP-NTY-9 124 6647 2 HomoSapiens IAPP NTYGKRNAV Naive T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-B*08:01 B2M MHCI -13456 chip0516_226027 15.61 12.43 Chip4 healthy_8 healthy TGCATCCTGCCCCTTGCTGGTGGTACTAGCGATGGAAAGCTGACATTT CILPLAGGTSDGKLTF TRAV26-2*01 TRAJ52*01 33.0 1656.0 TGTGCCAGCAGCTTAGGACAGGCCTACGAGCAGTACTTC CASSLGQAYEQYF TRBV7-8*01 TRBJ2-7*01 10.0 639.0 CILPLAGGTSDGKLTF_CASSLGQAYEQYF 1 2884 EBNA3A-193-201 EBV 0.89 1022 EBNA3A-193-201 124 2760 12 EBV EBNA3A FLRGRAYGL effector T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-B*08:01 B2M MHCI -13457 chip0516_595530 12.4 7.0 Chip4 healthy_8 healthy TGTGCCAGCAGCTTAGGACAGGCCTACGAGCAGTACTTC CASSLGQAYEQYF TRBV7-8*01 TRBJ2-7*01 11.0 705.0 _CASSLGQAYEQYF 175 4743 EBNA3A-193-201 EBV 0.86 1022 EBNA3A-193-201 96 4647 10 EBV EBNA3A FLRGRAYGL effector memory T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-B*08:01 B2M MHCI -13458 chip0516_632294 10.05 9.98 Chip4 healthy_8 healthy TGCATCCTGCCCCTTGCTGGTGGTACTAGCTATGGAAAGCTGACATTT CILPLAGGTSYGKLTF TRAV26-2*01 TRAJ52*01 29.0 1825.0 CILPLAGGTSYGKLTF_ 55 5264 EBNA3A-193-201 EBV 0.89 1022 EBNA3A-193-201 126 5138 9 EBV EBNA3A FLRGRAYGL effector memory T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-B*08:01 B2M MHCI -13459 chip0516_706212 -3.91 8.82 Chip4 healthy_7 healthy _ 6746 5077 PGT-178 PGT 0.96 1480 PGT-178 125 4952 2 HomoSapiens PGT LLAGIGTVPI Naive T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*02:01 B2M MHCI -13460 chip0516_798488 10.82 10.12 Chip4 healthy_6 healthy TGTGCTGTGGCCCTCTCAAGCAAATCACCCTTT CAVALSSKSPF TRAV8-3*01 TRAJ27*01 7.0 417.0 CAVALSSKSPF_ 3 6920 EBV-LMP2A EBV 0.94 700 EBV-LMP2A 120 6800 9 EBV LMP2A CLGGLLTMV effector memory T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*02:01 B2M MHCI -13461 chip0516_692979 6.17 13.03 Chip4 healthy_7 healthy TGTGCCAGTAGTATCCTCAGTCAGGATGAGCAGTTCTTC CASSILSQDEQFF TRBV19*01 TRBJ2-1*01 25.0 2339.0 _CASSILSQDEQFF 1 4263 M1 FLU 1.0 1250 M1 126 4137 7 InfluenzaA M1 GILGFVFTL transitional T cells between effector and memory populations PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*02:01 B2M MHCI -13462 chip0516_649476 -0.82 9.85 Chip4 healthy_7 healthy _ 6746 5796 M1 FLU 0.67 1250 NEG 122 5674 3 InfluenzaA M1 GILGFVFTL Naive T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*02:01 B2M MHCI -13463 chip0516_494008 11.78 12.2 Chip4 healthy_6 healthy TGTGCTGTGGCCCTCTCAAGCAAATCAACCTTT CAVALSSKSTF TRAV8-3*01 TRAJ27*01 9.0 1010.0 TGCGCCAGCAGCGGGGACGGAATGAACACTGAAGCTTTCTTT CASSGDGMNTEAFF TRBV10-2*01 TRBJ1-1*01 20.0 1222.0 CAVALSSKSTF_CASSGDGMNTEAFF 50 4000 EBV-LMP2A EBV 0.95 700 EBV-LMP2A 128 3872 11 EBV LMP2A CLGGLLTMV effector T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*02:01 B2M MHCI -13464 chip0516_262213 11.42 12.61 Chip4 healthy_6 healthy TGTGCTGTGGCCCTCTCAAGCAAATCAACCTTT CAVALSSKSTF TRAV8-3*01 TRAJ27*01 12.0 1026.0 CAVALSSKSTF_ 58 3179 EBV-LMP2A EBV 0.86 700 EBV-LMP2A 99 3080 11 EBV LMP2A CLGGLLTMV effector T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*02:01 B2M MHCI -13465 chip0516_579870 -0.85 9.65 Chip4 healthy_8 healthy TGTGCTATGGGTGCTTTGGGAGCAGGCAAATCCACCTTT CAMGALGAGKSTF TRAV8-3*01 TRAJ27*01 13.0 619.0 TGTGCCAGTCCACCGGAGGTTGCGTCCCGGGGAGCTGTTTTTT CASPPEV??gRPGELFF TRBV19*01 TRBJ2-2*01 1.0 137.0 CAMGALGAGKSTF_CASPPEV??gRPGELFF 1 7246 NP44-52 FLU 0.56 474 NEG 128 7118 3 InfluenzaA NP CTELKLSDY Naive T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*01:01 B2M MHCI -13466 chip0516_270713 10.73 11.14 Chip4 healthy_6 healthy TGTGCTGTGGCCCTCTCAAGCAAATCAACCTTT CAVALSSKSTF TRAV8-3*01 TRAJ27*01 6.0 317.0 TGCGCCAGCAGCGGGGACGGAATGAACACTGAAGCCTTCTTT CASSGDGMNTEAFF TRBV10-2*01 TRBJ1-1*01 16.0 652.0 CAVALSSKSTF_CASSGDGMNTEAFF 50 5400 EBV-LMP2A EBV 0.92 700 EBV-LMP2A 125 5275 9 EBV LMP2A CLGGLLTMV effector memory T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*02:01 B2M MHCI -13467 chip0516_120723 10.35 8.68 Chip4 healthy_6 healthy TGTGCTGTGGCCCTCTCAAGCAAATCAACCTTT CAVALSSKSTF TRAV8-3*01 TRAJ27*01 4.0 427.0 CAVALSSKSTF_ 58 7557 EBV-LMP2A EBV 0.88 700 EBV-LMP2A 154 7403 10 EBV LMP2A CLGGLLTMV effector memory T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*02:01 B2M MHCI -13468 chip0516_229583 10.6 8.57 Chip4 healthy_6 healthy _ 6746 4492 EBV-LMP2A EBV 0.96 700 EBV-LMP2A 118 4374 10 EBV LMP2A CLGGLLTMV effector memory T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*02:01 B2M MHCI -13469 chip0516_204432 12.72 8.87 Chip4 healthy_9 healthy _ 6746 3310 BZLF1-190-197 EBV 0.96 2156 BZLF1-190-197 131 3179 10 EBV BZLF1 RAKFKQLL effector memory T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-B*08:01 B2M MHCI -13470 chip0516_6400 5.62 8.78 Chip4 healthy_8 healthy _ 6746 5377 EBNA3A-193-201 EBV 0.93 1022 EBNA3A-193-201 104 5273 6 EBV EBNA3A FLRGRAYGL central memory T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-B*08:01 B2M MHCI -13471 chip0516_791795 -2.86 8.27 Chip4 healthy_7 healthy TGTGCAGCCCCCGCGCGTGCAGCCACTCGTACGCTTACATTT CAAPARAATRTLTF TRAV25*01 TRAJ56*01 3.0 265.0 TGTGCCAGCTGGCCGACGCGATCGGGGAATGAGCAGTTCTTC CASWPTRSGNEQFF TRBV2*01 TRBJ2-1*01 8.0 848.0 CAAPARAATRTLTF_CASWPTRSGNEQFF 1 4941 PTPRN-180-188 PTPRN 0.94 18 PTPRN-180-188 118 4823 2 HomoSapiens PTPRN LLPPLLEHL Naive T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*02:01 B2M MHCI -13472 chip0516_403462 10.85 10.79 Chip4 healthy_9 healthy _ 6746 3804 BZLF1-190-197 EBV 0.97 2156 BZLF1-190-197 117 3687 9 EBV BZLF1 RAKFKQLL effector memory T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-B*08:01 B2M MHCI -13473 chip0516_177791 -1.21 10.45 Chip4 healthy_9 healthy TGTGCCAGCAGCCGGGCCCTAGAGGGAAACACCATATACTTT CASSRALEGNTIYF TRBV7-9*01 TRBJ1-3*01 2.0 86.0 _CASSRALEGNTIYF 1 5108 LMP2A-CPL EBV 0.42 44 NEG 106 5002 3 EBV LMP2A CPLSKILL Naive T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-B*08:01 B2M MHCI -13474 chip0516_443151 11.92 6.78 Chip4 healthy_8 healthy TGCATCCTGCCCCTTGCTGGTGGTACTAGCTATGGAAAGCTGACATTT CILPLAGGTSYGKLTF TRAV26-2*01 TRAJ52*01 2.0 14.0 TGTGCCAGCAGCTTAGGACAGGCCTACGAGCAGTACTTC CASSLGQAYEQYF TRBV7-8*01 TRBJ2-7*01 19.0 1119.0 CILPLAGGTSYGKLTF_CASSLGQAYEQYF 308 5929 EBNA3A-193-201 EBV 0.91 1022 EBNA3A-193-201 135 5794 10 EBV EBNA3A FLRGRAYGL effector memory T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-B*08:01 B2M MHCI -13475 chip0516_726718 12.83 13.51 Chip4 healthy_6 healthy TGTGCCAGCAGCTCGGGACAGGGGGACAATGAGCAGTTCTTC CASSSGQGDNEQFF TRBV11-3*01 TRBJ2-1*01 6.0 384.0 _CASSSGQGDNEQFF 12 2872 EBV-BLMF1 EBV 1.0 2531 NEG 109 2763 11 EBV BLMF1 GLCTLVAML effector T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*02:01 B2M MHCI -13476 chip0516_865478 12.91 6.66 Chip4 healthy_6 healthy TGCGCCAGCAGCGGGGACGGAATGAACACTGAAGCTTTCTTT CASSGDGMNTEAFF TRBV10-2*01 TRBJ1-1*01 16.0 940.0 _CASSGDGMNTEAFF 131 5514 EBV-LMP2A EBV 0.98 700 EBV-LMP2A 142 5372 10 EBV LMP2A CLGGLLTMV effector memory T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*02:01 B2M MHCI -13477 chip0516_504611 8.04 12.52 Chip4 healthy_7 healthy TGTGCCAGCAGTTCCCGACTAGCGGGAGCCTTTAATGAGCAGTTCTTC CASSSRLAGAFNEQFF TRBV27*01 TRBJ2-1*01 32.0 1995.0 _CASSSRLAGAFNEQFF 1 3331 PGT-178 PGT 0.78 1480 NEG 115 3216 7 HomoSapiens PGT LLAGIGTVPI transitional T cells between effector and memory populations PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*02:01 B2M MHCI -13478 chip0516_56993 -1.6 8.65 Chip4 healthy_6 healthy TGTGCCGTGGGAGAGGGCTTTCAGAAACTTGTATTT CAVGEGFQKLVF TRAV12-2*01 TRAJ8*01 19.0 1263.0 CAVGEGFQKLVF_ 1 7011 MART1-ALA MART1 0.73 269 MART1-ALA 118 6893 3 HomoSapiens MART1 ALAGIGILTV Naive T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*02:01 B2M MHCI -13479 chip0516_350199 11.19 7.76 Chip4 healthy_8 healthy _ 6746 3917 EBNA3A-193-201 EBV 0.93 1022 EBNA3A-193-201 118 3799 10 EBV EBNA3A FLRGRAYGL effector memory T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-B*08:01 B2M MHCI -13480 chip0516_647550 10.68 11.32 Chip4 healthy_6 healthy TGTGCTGTGGCCCTCTCAAGCAAATCAACCTTT CAVALSSKSTF TRAV8-3*01 TRAJ27*01 4.0 515.0 CAVALSSKSTF_ 58 5442 EBV-LMP2A EBV 0.94 700 EBV-LMP2A 128 5314 9 EBV LMP2A CLGGLLTMV effector memory T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*02:01 B2M MHCI -13481 chip0516_677299 -2.88 13.99 Chip4 healthy_9 healthy TGTGCCAGCATGATAGACCCGGCTAGCGGGAAGGGGGAGTATTTT CASMIDPASGKGEYF TRBV5-5*01 TRBJ2-3*01 30.0 1690.0 _CASMIDPASGKGEYF 1 3158 EBNA3A-158-166 EBV 0.5 444 EBNA3A-158-166 92 3066 1 EBV EBNA3A QAKWRLQTL Naive T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-B*08:01 B2M MHCI -13482 chip0516_175790 11.13 8.86 Chip4 healthy_6 healthy TGCGCCAGCAGCGGGGACGGAATGAACACTGAAGCTTTCTTT CASSGDGMNTEAFF TRBV10-2*01 TRBJ1-1*01 35.0 1916.0 _CASSGDGMNTEAFF 131 6418 EBV-LMP2A EBV 1.0 700 EBV-LMP2A 123 6295 10 EBV LMP2A CLGGLLTMV effector memory T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*02:01 B2M MHCI -13483 chip0516_461915 5.77 12.79 Chip4 healthy_7 healthy _ 6746 8240 M1 FLU 0.99 1250 M1 127 8113 7 InfluenzaA M1 GILGFVFTL transitional T cells between effector and memory populations PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*02:01 B2M MHCI -13484 chip0516_833476 -3.25 13.33 Chip4 healthy_6 healthy _ 6746 3875 MART1-ALA MART1 0.62 269 NEG 100 3775 1 HomoSapiens MART1 ALAGIGILTV Naive T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*02:01 B2M MHCI -13485 chip0516_646034 15.87 10.86 Chip4 healthy_8 healthy TGTGCCAGCAGCTATGGGACAGGGCTATTGAATGAGCAGTTCTTC CASSYGTGLLNEQFF TRBV7-3*01 TRBJ2-1*01 12.0 694.0 _CASSYGTGLLNEQFF 1 4357 BZLF1-190-197 EBV 0.41 2156 NEG 122 4235 12 EBV BZLF1 RAKFKQLL effector T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-B*08:01 B2M MHCI -13486 chip0516_645557 -2.23 8.48 Chip4 healthy_8 healthy TGTGCCGTGGGTGCGTGTGCTGGGGGCTTCACAACTATCTTT CAVGACAGGFTTIF TRAV8-1*01 TRAJ9*01 4.0 368.0 TGTGCAGCAAGCGCGCGAGGGGCAGCAGTGCTTCCAAGATAATCTTT CAASARGgc?SSASKIIF TRAV29/DV5*01 TRAJ3*01 3.0 89.0 0.38 TGCGCCAGCAGTTCCTTTGGTGTTGGAGCTTTCTTT CASSSFGVGAFF TRBV5-1*01 TRBJ1-1*01 20.0 1858.0 CAVGACAGGFTTIF_CASSSFGVGAFF 1 10070 ZNT8-YAK-9 ZNT8 0.85 59 NEG 122 9948 3 HomoSapiens ZNT8 YAKWKLCSA Naive T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-B*08:01 B2M MHCI -13487 chip0516_705477 9.44 12.05 Chip4 healthy_8 healthy TGCATCCTGCCCCTTGCTGGTGGTACTAGCTATGGAAAGCTGACATTT CILPLAGGTSYGKLTF TRAV26-2*01 TRAJ52*01 40.0 1742.0 TGTGCCAGCACCATATCCAGGGGTGGCTACGCCTTC CASTISRGGYAF TRBV12-3*01,TRBV12-4*01 TRBJ1-2*01 1.0 15.0 CILPLAGGTSYGKLTF_CASTISRGGYAF 1 4255 EBNA3A-193-201 EBV 0.54 1022 EBNA3A-193-201 116 4139 7 EBV EBNA3A FLRGRAYGL transitional T cells between effector and memory populations PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-B*08:01 B2M MHCI -13488 chip0516_389135 15.11 10.83 Chip4 healthy_9 healthy _ 6746 3070 BZLF1-190-197 EBV 0.6 2156 NEG 110 2960 12 EBV BZLF1 RAKFKQLL effector T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-B*08:01 B2M MHCI -13489 chip0516_544894 11.07 11.12 Chip4 healthy_6 healthy TGCGCCAGCAGCGGGGACGGAATGAACACTGAAGCTTTCTTT CASSGDGMNTEAFF TRBV10-2*01 TRBJ1-1*01 13.0 733.0 _CASSGDGMNTEAFF 131 4538 EBV-LMP2A EBV 1.0 700 EBV-LMP2A 113 4425 9 EBV LMP2A CLGGLLTMV effector memory T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*02:01 B2M MHCI -13490 chip0516_299410 14.81 9.36 Chip4 healthy_8 healthy TGTGCCAGCAGCTTAGGACAGGCCTACGAGCAGTACTTC CASSLGQAYEQYF TRBV7-8*01 TRBJ2-7*01 6.0 622.0 _CASSLGQAYEQYF 175 5296 EBNA3A-193-201 EBV 0.83 1022 EBNA3A-193-201 117 5179 12 EBV EBNA3A FLRGRAYGL effector T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-B*08:01 B2M MHCI -13491 chip0516_46338 11.46 9.56 Chip4 healthy_8 healthy TGTGCCGTGAAGACGGACACCAATGCAGGCAAATCAACCTTT CAVKTDTNAGKSTF TRAV12-2*01 TRAJ27*01 20.0 1288.0 CAVKTDTNAGKSTF_ 20 4614 EBNA3A-193-201 EBV 0.72 1022 EBNA3A-193-201 130 4484 9 EBV EBNA3A FLRGRAYGL effector memory T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-B*08:01 B2M MHCI -13492 chip0516_706514 10.2 11.59 Chip4 healthy_6 healthy TGCGCCAGCAGCGGGGACGGAATGAACACTGAAGCTTTCTTT CASSGDGMNTEAFF TRBV10-2*01 TRBJ1-1*01 1.0 38.0 _CASSGDGMNTEAFF 131 5402 EBV-LMP2A EBV 0.91 700 EBV-LMP2A 110 5292 9 EBV LMP2A CLGGLLTMV effector memory T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*02:01 B2M MHCI -13493 chip0516_882072 11.95 7.8 Chip4 healthy_6 healthy _ 6746 5441 EBV-LMP2A EBV 0.95 700 EBV-LMP2A 111 5330 10 EBV LMP2A CLGGLLTMV effector memory T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*02:01 B2M MHCI -13494 chip0516_251524 13.47 10.51 Chip4 healthy_8 healthy TGTGCCGTGAAGACGGACACCAATGCAGGCAAATCAACCTTT CAVKTDTNAGKSTF TRAV12-2*01 TRAJ27*01 27.0 1336.0 CAVKTDTNAGKSTF_ 20 3677 EBNA3A-193-201 EBV 0.78 1022 EBNA3A-193-201 128 3549 12 EBV EBNA3A FLRGRAYGL effector T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-B*08:01 B2M MHCI -13495 chip0516_217580 -1.35 9.25 Chip4 healthy_9 healthy TGTGCCAGCAGTCGTCTGGGTCTGCAAGAGACCCAGTACTTC CASSRLGLQETQYF TRBV27*01 TRBJ2-5*01 20.0 1284.0 _CASSRLGLQETQYF 1 4673 IAPP-STN-9 IAPP 0.73 48 IAPP-STN-9 138 4535 3 HomoSapiens IAPP STNVGSNTY Naive T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*01:01 B2M MHCI -13496 chip0516_576250 10.86 8.31 Chip4 healthy_6 healthy TGCGCCAGCAGCGGGGACGGAATGAACACTGAAGCTTTCTTT CASSGDGMNTEAFF TRBV10-2*01 TRBJ1-1*01 41.0 2030.0 _CASSGDGMNTEAFF 131 6078 EBV-LMP2A EBV 1.0 700 EBV-LMP2A 147 5931 10 EBV LMP2A CLGGLLTMV effector memory T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*02:01 B2M MHCI -13497 chip0516_516328 -2.7 10.94 Chip4 healthy_9 healthy _ 6746 4469 INS-GSH-9 INS 0.5 19 NEG 122 4347 4 HomoSapiens INS GSHLVEALY Naive T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*01:01 B2M MHCI -13498 chip0516_491457 -4.56 9.83 Chip4 healthy_7 healthy TGTGCCACCAGTGATCGTTCGGCCACTGAAGCTTTCTTT CATSDRSATEAFF TRBV24-1*01 TRBJ1-1*01 8.0 415.0 _CATSDRSATEAFF 1 4421 MART1-ALA MART1 0.53 269 MART1-ALA 110 4311 2 HomoSapiens MART1 ALAGIGILTV Naive T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*02:01 B2M MHCI -13499 chip0516_656413 10.11 8.9 Chip4 healthy_6 healthy _ 6746 5035 EBV-LMP2A EBV 0.96 700 EBV-LMP2A 139 4896 8 EBV LMP2A CLGGLLTMV effector memory T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*02:01 B2M MHCI -13500 chip0516_326473 6.79 13.74 Chip4 healthy_7 healthy CTGTCCGGTAACCAGTTCTATTTT LSGNQFYF TRAV13-1*01 TRAJ49*01 2.0 74.0 LSGNQFYF_ 1 4125 M1 FLU 0.62 1250 M1 128 3997 7 InfluenzaA M1 GILGFVFTL transitional T cells between effector and memory populations PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*02:01 B2M MHCI -13501 chip0516_838618 7.47 13.34 Chip4 healthy_8 healthy TGTGCCAGCAGCCTGACAGGACCGGGAGATCAGCCCCAGCATTTT CASSLTGPGDQPQHF TRBV7-9*01 TRBJ1-5*01 3.0 177.0 _CASSLTGPGDQPQHF 1 4125 BZLF1-190-197 EBV 0.88 2156 BZLF1-190-197 107 4018 7 EBV BZLF1 RAKFKQLL transitional T cells between effector and memory populations PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-B*08:01 B2M MHCI -13502 chip0516_312518 8.33 11.47 Chip4 healthy_8 healthy TGCATCCTGCCCCTTGCTGGTGGTACTAGCTATGGAAAGCTGACATTT CILPLAGGTSYGKLTF TRAV26-2*01 TRAJ52*01 12.0 549.0 CILPLAGGTSYGKLTF_ 55 7770 EBNA3A-193-201 EBV 0.79 1022 EBNA3A-193-201 118 7652 7 EBV EBNA3A FLRGRAYGL transitional T cells between effector and memory populations PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-B*08:01 B2M MHCI -13503 chip0516_204526 -1.64 7.12 Chip4 healthy_8 healthy CGTGCCGTAAATGCGTTGTATTCCGGCGGGGGTGCTGACGGACGCACCTTT RAVNALYSGGGADGRTF TRAV8-1*01 TRAJ45*01 3.0 63.0 TGTGCCATCAGTGAATCCGGGGGTGGCGGTTTCAGGGAGCAGTTCTTC CAISESGGGGFREQFF TRBV10-3*01 TRBJ2-1*01 13.0 574.0 RAVNALYSGGGADGRTF_CAISESGGGGFREQFF 1 10934 EBNA3A-158-166 EBV 0.52 444 EBNA3A-158-166 107 10827 3 EBV EBNA3A QAKWRLQTL Naive T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-B*08:01 B2M MHCI -13504 chip0516_33953 10.49 9.2 Chip4 healthy_6 healthy TGTGCTCTAGCGCTCTCCAGCAAGTAAACCTTT CALALSSK*TF TRAV8-3*01 TRAJ27*01 6.0 556.0 CALALSSK*TF_ 1 8287 EBV-LMP2A EBV 0.93 700 EBV-LMP2A 139 8148 10 EBV LMP2A CLGGLLTMV effector memory T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*02:01 B2M MHCI -13505 chip0516_778796 5.25 8.81 Chip4 healthy_6 healthy _ 6746 4258 EBV-LMP2-FLY EBV 0.9 355 NEG 105 4153 6 EBV LMP2 FLYALALLL central memory T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*02:01 B2M MHCI -13506 chip0516_410833 11.72 7.6 Chip4 healthy_8 healthy TGCATCCTGCCCCTTGCTGGTGGTACTAGCTATGGAAAGCTGACATTT CILPLAGGTSYGKLTF TRAV26-2*01 TRAJ52*01 60.0 4424.0 TGTGCCAGCAGCTTAGGACAGGCCTACGAGCAGTACTTC CASSLGQAYEQYF TRBV7-8*01 TRBJ2-7*01 19.0 1228.0 CILPLAGGTSYGKLTF_CASSLGQAYEQYF 308 5712 EBNA3A-193-201 EBV 0.78 1022 EBNA3A-193-201 114 5598 10 EBV EBNA3A FLRGRAYGL effector memory T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-B*08:01 B2M MHCI -13507 chip0516_98771 -3.91 9.19 Chip4 healthy_8 healthy TGTGCTGTGGAGTAGGAGGAACGACTACAAGCTCAGCTTT CAVE*Ega??acDYKLSF TRAV8-3*01 TRAJ20*01 1.0 31.0 CAVE*Ega??acDYKLSF_ 1 6859 BZLF1-190-197 EBV 0.8 2156 NEG 108 6751 2 EBV BZLF1 RAKFKQLL Naive T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-B*08:01 B2M MHCI -13508 chip0516_205100 5.89 10.15 Chip4 healthy_8 healthy TACATCCTGCCCCTTGCCGGTGGTACTAGCTATGGAAAGCTGACATTT YILPLAGGTSYGKLTF TRAV26-2*01 TRAJ52*01 24.0 1131.0 TGTGCCAGCAACTTAGGACAGGCCTACGAGCAGTACTTC CASNLGQAYEQYF TRBV7-8*01 TRBJ2-7*01 14.0 821.0 YILPLAGGTSYGKLTF_CASNLGQAYEQYF 1 6322 EBNA3A-193-201 EBV 0.91 1022 EBNA3A-193-201 109 6213 6 EBV EBNA3A FLRGRAYGL central memory T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-B*08:01 B2M MHCI -13509 chip0516_496211 5.85 11.38 Chip4 healthy_8 healthy TGTGCCTACCAGGATGGGGCCAACGTCCTGACTTTC CAYQDGANVLTF TRBV10-3*01 TRBJ2-6*01 7.0 563.0 _CAYQDGANVLTF 1 5438 NP44-52 FLU 0.72 474 NP44-52 123 5315 6 InfluenzaA NP CTELKLSDY central memory T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*01:01 B2M MHCI -13510 chip0516_427264 11.24 8.08 Chip4 healthy_6 healthy TGTGCTGTGGCCCTCTCAAGCAAATCAACCTTT CAVALSSKSTF TRAV8-3*01 TRAJ27*01 4.0 456.0 TGCGCCAGCAGCGGGGACGGAATGAACACTGAAGCTTTCTTT CASSGDGMNTEAFF TRBV10-2*01 TRBJ1-1*01 5.0 142.0 CAVALSSKSTF_CASSGDGMNTEAFF 50 4489 EBV-LMP2A EBV 0.92 700 EBV-LMP2A 107 4382 10 EBV LMP2A CLGGLLTMV effector memory T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*02:01 B2M MHCI -13511 chip0516_105778 -1.04 9.12 Chip4 healthy_9 healthy TGCAGTGCTAGAGCTCCTTTTGACAGGGGGTAGCACAGATACGCAGTATTTT CSARAPFDag??ggGSTDTQYF TRBV20-1*01 TRBJ2-3*01 39.0 2008.0 _CSARAPFDag??ggGSTDTQYF 1 8032 EBNA3A-158-166 EBV 0.57 444 EBNA3A-158-166 106 7926 3 EBV EBNA3A QAKWRLQTL Naive T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-B*08:01 B2M MHCI -13512 chip0516_216071 5.99 10.65 Chip4 healthy_6 healthy TGTGCTCTGAGTGAGGGCCCGGCATGCCAGACTCATGTTT CALSEGcc??ggHARLMF TRAV19*01 TRAJ31*01 1.0 20.0 CALSEGcc??ggHARLMF_ 2 8069 EBV-BRLF1 EBV 0.95 1264 EBV-BRLF1 117 7952 6 EBV BRLF1 YVLDHLIVV central memory T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*02:01 B2M MHCI -13513 chip0516_765329 11.43 10.36 Chip4 healthy_6 healthy TGCGCCAGCAGCGGGGACGGAATGAACACTGAAGCTTTCTTT CASSGDGMNTEAFF TRBV10-2*01 TRBJ1-1*01 8.0 255.0 _CASSGDGMNTEAFF 131 5761 EBV-LMP2A EBV 0.97 700 EBV-LMP2A 116 5645 9 EBV LMP2A CLGGLLTMV effector memory T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*02:01 B2M MHCI -13514 chip0516_748232 15.24 12.87 Chip4 healthy_6 healthy TGTGCCGTGAAGGGCGGGAAAACTTATAACACCGACAAGCTCATCTTT CAVKGGKTYNTDKLIF TRAV12-2*01 TRAJ34*01 5.0 117.0 CAVKGGKTYNTDKLIF_ 1 1893 M1 FLU 0.84 1250 M1 135 1758 12 InfluenzaA M1 GILGFVFTL effector T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*02:01 B2M MHCI -13515 chip0516_645922 11.11 11.72 Chip4 healthy_9 healthy _ 6746 3500 BZLF1-190-197 EBV 0.88 2156 BZLF1-190-197 114 3386 9 EBV BZLF1 RAKFKQLL effector memory T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-B*08:01 B2M MHCI -13516 chip0516_375303 -1.43 7.33 Chip4 healthy_7 healthy TGCAGTGCTACCCGCGCAGACAAAAACATTCAGTACTTC CSATRADKNIQYF TRBV20-1*01 TRBJ2-4*01 10.0 780.0 _CSATRADKNIQYF 1 5224 EBV-LMP2A EBV 0.7 700 EBV-LMP2A 106 5118 3 EBV LMP2A CLGGLLTMV Naive T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*02:01 B2M MHCI -13517 chip0516_597043 5.74 12.48 Chip4 healthy_8 healthy TGTGCTCTGAGTAAGGCGGAGGCGCCTACAAGCTCAGCTTT CALSKAga?GAYKLSF TRAV19*01 TRAJ20*01 2.0 7.0 TGTGCCAGTAGTATACAACAGGGCCAGCCCCAGCATTTT CASSIQQGQPQHF TRBV19*01 TRBJ1-5*01 27.0 1960.0 CALSKAga?GAYKLSF_CASSIQQGQPQHF 1 6146 NP380-388 FLU 0.85 60 NP380-388 110 6036 7 InfluenzaA NP ELRSRYWAI transitional T cells between effector and memory populations PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-B*08:01 B2M MHCI -13518 chip0516_471616 11.47 7.73 Chip4 healthy_6 healthy _ 6746 6208 EBV-LMP2A EBV 0.94 700 EBV-LMP2A 108 6100 10 EBV LMP2A CLGGLLTMV effector memory T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*02:01 B2M MHCI -13519 chip0516_679282 9.93 9.5 Chip4 healthy_6 healthy _ 6746 5304 EBV-LMP2A EBV 1.0 700 EBV-LMP2A 114 5190 8 EBV LMP2A CLGGLLTMV effector memory T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*02:01 B2M MHCI -13520 chip0516_21304 6.19 12.48 Chip4 healthy_8 healthy _ 6746 5070 NP30-38 FLU 0.68 72 NP30-38 117 4953 7 InfluenzaA NP RPIIRPATL transitional T cells between effector and memory populations PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-B*08:01 B2M MHCI -13521 chip0516_739524 7.72 11.8 Chip4 healthy_6 healthy _ 6746 4173 EBV-BLMF1 EBV 0.83 2531 EBV-BLMF1 114 4059 7 EBV BLMF1 GLCTLVAML transitional T cells between effector and memory populations PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*02:01 B2M MHCI -13522 chip0516_416540 4.67 11.02 Chip4 healthy_10 healthy _ 6746 3496 NP140-148 FLU 0.83 102 NEG 105 3391 6 InfluenzaA NP HSNLNDATY central memory T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*01:01 B2M MHCI -13523 chip0516_655201 12.58 8.63 Chip4 healthy_8 healthy TGCATCCTGCCCCTTGCTGGTGGTACTAGCTACGGAAAGCTGACATTT CILPLAGGTSYGKLTF TRAV26-2*01 TRAJ52*01 9.0 453.0 TGTGCCAGCAGCTTAGGACAGGCCTACGAGCAGTACTTC CASSLGQAYEQYF TRBV7-8*01 TRBJ2-7*01 20.0 967.0 CILPLAGGTSYGKLTF_CASSLGQAYEQYF 308 4753 EBNA3A-193-201 EBV 0.76 1022 EBNA3A-193-201 141 4612 10 EBV EBNA3A FLRGRAYGL effector memory T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-B*08:01 B2M MHCI -13524 chip0516_196172 4.84 9.95 Chip4 healthy_7 healthy _ 6746 5517 HCVNS4B-1807-1816 HCV 1.0 74 NEG 109 5408 6 HCV NS4B LLFNILGGWV central memory T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*02:01 B2M MHCI -13525 chip0516_107278 11.22 8.37 Chip4 healthy_8 healthy _ 6746 5338 BZLF1-190-197 EBV 0.9 2156 BZLF1-190-197 124 5214 10 EBV BZLF1 RAKFKQLL effector memory T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-B*08:01 B2M MHCI -13526 chip0516_331651 10.5 10.45 Chip4 healthy_6 healthy TGTGCTGTGGCCCTCTCAAGCAAATCAACCTTT CAVALSSKSTF TRAV8-3*01 TRAJ27*01 1.0 33.0 TGCGCCAGCAGCGGGGACGGAATGAACACTGAAGCTTTCTTT CASSGDGMNTEAFF TRBV10-2*01 TRBJ1-1*01 38.0 2565.0 CAVALSSKSTF_CASSGDGMNTEAFF 50 5943 EBV-LMP2A EBV 0.9 700 EBV-LMP2A 127 5816 9 EBV LMP2A CLGGLLTMV effector memory T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*02:01 B2M MHCI -13527 chip0516_882579 10.42 10.46 Chip4 healthy_6 healthy _ 6746 7200 EBV-LMP2A EBV 0.92 700 EBV-LMP2A 128 7072 9 EBV LMP2A CLGGLLTMV effector memory T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*02:01 B2M MHCI -13528 chip0516_429384 10.88 7.42 Chip4 healthy_8 healthy _ 6746 4813 EBNA3A-193-201 EBV 0.76 1022 EBNA3A-193-201 135 4678 10 EBV EBNA3A FLRGRAYGL effector memory T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-B*08:01 B2M MHCI -13529 chip0516_424349 -5.27 9.42 Chip4 healthy_7 healthy TGTGCCGTGACTGGCGACTACAAGCTCAGCTTT CAVTGDYKLSF TRAV12-2*01 TRAJ20*01 15.0 1860.0 TGCCTCGTGGTATCCAGGCTCTAGCAACACAGGCAAACTAATCTTT CLVVSRLta??gcNTGKLIF TRAV4*01 TRAJ37*01 19.0 722.0 0.51 TGCAGTGCTCCACCGACTAGCGGGAGTTTCAATGAGCAGTTCTTC CSAPPTSGSFNEQFF TRBV20-1*01 TRBJ2-1*01 5.0 272.0 CAVTGDYKLSF_CSAPPTSGSFNEQFF 1 5678 PGT-178 PGT 0.71 1480 PGT-178 102 5576 2 HomoSapiens PGT LLAGIGTVPI Naive T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*02:01 B2M MHCI -13530 chip0516_39204 10.46 7.31 Chip4 healthy_8 healthy TGTGCCAGCAGCTTAGGACAGGCCTACGAGCAGTACTTC CASSLGQAYEQYF TRBV7-8*01 TRBJ2-7*01 45.0 2864.0 _CASSLGQAYEQYF 175 9727 EBNA3A-193-201 EBV 0.85 1022 EBNA3A-193-201 121 9606 10 EBV EBNA3A FLRGRAYGL effector memory T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-B*08:01 B2M MHCI -13531 chip0516_207600 -0.83 8.87 Chip4 healthy_6 healthy _ 6746 7579 MART1-A28L MART1 0.93 84 NEG 106 7473 3 HomoSapiens MART1 ALGIGILTV Naive T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*02:01 B2M MHCI -13532 chip0516_788269 10.4 10.35 Chip4 healthy_6 healthy TGTGCTGTGGCCCTCTCAAGCAAATCAACCTTT CAVALSSKSTF TRAV8-3*01 TRAJ27*01 11.0 631.0 CAVALSSKSTF_ 58 5607 EBV-LMP2A EBV 0.96 700 EBV-LMP2A 118 5489 9 EBV LMP2A CLGGLLTMV effector memory T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*02:01 B2M MHCI -13533 chip0516_713812 -3.82 12.15 Chip4 healthy_8 healthy TGTGCAGCAACTGGGGCAAACAACCTCTTCTTT CAATGANNLFF TRAV13-1*01 TRAJ36*01 14.0 1297.0 CAATGANNLFF_ 1 4831 Pol173-181 HIV 0.71 8 Pol173-181 121 4710 1 HIV-1 Pol GPKVKQWPL Naive T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-B*08:01 B2M MHCI -13534 chip0516_729827 10.71 10.46 Chip4 healthy_6 healthy TGTGCAGCAAGCCTTATGGAGGAAGCCAAGGAAATCTCATCTTT CAASLMEg?aSQGNLIF TRAV2*01 TRAJ42*01 1.0 57.0 CAASLMEg?aSQGNLIF_ 1 4778 PGT-178 PGT 0.9 1480 NEG 116 4662 9 HomoSapiens PGT LLAGIGTVPI effector memory T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*02:01 B2M MHCI -13535 chip0516_78447 10.92 8.81 Chip4 healthy_8 healthy TGTGCCAGCAGCTTAGGACAGGCCTACGAGCAGTACTTC CASSLGQAYEQYF TRBV7-8*01 TRBJ2-7*01 21.0 1337.0 _CASSLGQAYEQYF 175 7438 EBNA3A-193-201 EBV 0.87 1022 EBNA3A-193-201 136 7302 10 EBV EBNA3A FLRGRAYGL effector memory T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-B*08:01 B2M MHCI -13536 chip0516_9481 7.87 11.71 Chip4 healthy_6 healthy TGTGCAATGAGCGCGACTGGAGCCAATAGTAAGCTGACATTT CAMSATGANSKLTF TRAV12-3*01 TRAJ56*01 22.0 1671.0 TGCATCCTCTAACAGAGATGACAAGATCATCTTT CIL*Qag??atDKIIF TRAV26-2*01 TRAJ30*01 28.0 2495.0 0.48 CAMSATGANSKLTF_ 1 4713 ZNT8-115-123 ZNT8 0.85 74 NEG 118 4595 7 HomoSapiens ZNT8 LLSLFSLWL transitional T cells between effector and memory populations PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*02:01 B2M MHCI -13537 chip0516_573969 5.8 12.53 Chip4 healthy_8 healthy TGTGCTGTGAGCTCCGTTTTCCGATGGCCAGCAGCTGCTCTTT CAVSSVF??cDGQQLLF TRAV8-4*01 TRAJ16*01 29.0 1995.0 TGTGCCGGCAGTGATGTCTTGATGGCGGGGTTGCGGCACACTGAAGCTTTCTTT CAGSDVLMAGLRHTEAFF TRBV6-4*01 TRBJ1-1*01 7.0 126.0 CAVSSVF??cDGQQLLF_CAGSDVLMAGLRHTEAFF 1 8858 NP30-38 FLU 0.62 72 NP30-38 119 8739 7 InfluenzaA NP RPIIRPATL transitional T cells between effector and memory populations PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-B*08:01 B2M MHCI -13538 chip0516_773763 -2.03 16.08 Chip4 healthy_9 healthy TGTGCCACCAGTGATTTGACAGGGGGGCACAATGAGCAGTTCTTC CATSDLTGGHNEQFF TRBV24-1*01 TRBJ2-1*01 5.0 236.0 _CATSDLTGGHNEQFF 1 772 NP140-148 FLU 0.88 102 NEG 100 672 1 InfluenzaA NP HSNLNDATY Naive T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*01:01 B2M MHCI -13539 chip0516_562979 -1.72 9.04 Chip4 healthy_7 healthy TGTGCCATGGGTCGTCGAGAAGCCAAGGAAATCTCATCTTT CAMGRRga?SQGNLIF TRAV12-3*01 TRAJ42*01 35.0 2528.0 TGTGCCAGCAGCTTTGGCGGCACTGAAGCTTTCTTT CASSFGGTEAFF TRBV7-2*01 TRBJ1-1*01 10.0 911.0 CAMGRRga?SQGNLIF_CASSFGGTEAFF 1 5212 PGT-178 PGT 0.47 1480 PGT-178 110 5102 4 HomoSapiens PGT LLAGIGTVPI Naive T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*02:01 B2M MHCI -13540 chip0516_698410 -3.65 12.9 Chip4 healthy_8 healthy TGTGCTCTCTACTATACCTCAGGAACCTACAAATACATCTTT CALYYTSGTYKYIF TRAV19*01 TRAJ40*01 16.0 1541.0 TGTGCCAGCAGCCTCGGGACAGGGGGCTACGAGCAGTACTTC CASSLGTGGYEQYF TRBV7-6*01 TRBJ2-7*01 38.0 3479.0 CALYYTSGTYKYIF_CASSLGTGGYEQYF 1 4369 NP413-421 FLU 0.61 16 NEG 110 4259 1 InfluenzaA NP ALKCKGFHV Naive T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-B*08:01 B2M MHCI -13541 chip0516_282481 8.76 11.08 Chip4 healthy_8 healthy TGTGCCAGCAGCTTAGGACAGGCCTACGAGCAGTACTTC CASSLGQAYEQYF TRBV7-8*01 TRBJ2-7*01 12.0 960.0 _CASSLGQAYEQYF 175 6723 EBNA3A-193-201 EBV 0.9 1022 EBNA3A-193-201 117 6606 7 EBV EBNA3A FLRGRAYGL transitional T cells between effector and memory populations PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-B*08:01 B2M MHCI -13542 chip0516_6566 5.77 12.72 Chip4 healthy_9 healthy TGCGCAATGAGAGAGGGCGGGAGCAACTATCAGTTAATCTGG CAMREGGSNYQLIW TRAV14/DV4*01 TRAJ33*01 58.0 4158.0 CAMREGGSNYQLIW_ 1 5684 NP30-38 FLU 0.64 72 NP30-38 109 5575 7 InfluenzaA NP RPIIRPATL transitional T cells between effector and memory populations PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-B*08:01 B2M MHCI -13543 chip0516_583663 11.69 8.29 Chip4 healthy_8 healthy TGCATCCTGCCCCTTGCTGGTGGTACTAGCTATGGAAAGCTGACATTT CILPLAGGTSYGKLTF TRAV26-2*01 TRAJ52*01 15.0 775.0 CILPLAGGTSYGKLTF_ 55 4731 EBNA3A-193-201 EBV 0.95 1022 EBNA3A-193-201 145 4586 10 EBV EBNA3A FLRGRAYGL effector memory T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-B*08:01 B2M MHCI -13544 chip0516_679937 11.58 12.67 Chip4 healthy_8 healthy TGCATCCTGCCCCTTGCTGGTGGTACTAGCTATGGAAAGCTGACATTT CILPLAGGTSYGKLTF TRAV26-2*01 TRAJ52*01 26.0 2009.0 TGTGCCAGCAGCTCCGGACAGGCCTACGAGCAGTACTTC CASSSGQAYEQYF TRBV7-8*01 TRBJ2-7*01 22.0 1554.0 CILPLAGGTSYGKLTF_CASSSGQAYEQYF 40 3300 EBNA3A-193-201 EBV 0.8 1022 EBNA3A-193-201 125 3175 11 EBV EBNA3A FLRGRAYGL effector T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-B*08:01 B2M MHCI -13545 chip0516_258162 10.64 10.5 Chip4 healthy_6 healthy _ 6746 5132 EBV-LMP2A EBV 0.91 700 EBV-LMP2A 110 5022 9 EBV LMP2A CLGGLLTMV effector memory T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*02:01 B2M MHCI -13546 chip0516_13505 -2.05 8.49 Chip4 healthy_7 healthy TGTGCAATGAAGGACGACTACAAGCTCAGCTTT CAMKDDYKLSF TRAV14/DV4*01 TRAJ20*01 1.0 54.0 TGTGCAGTGGGAATAATGCAGGCAACATGCTCACCTTT CAVGIMc?aGNMLTF TRAV13-1*01 TRAJ39*01 2.0 6.0 0.67 TGCGCCAGCAGTCAATTCCCCCCTTGTTCCAGGGCCCGAATATTTGAGGCTGAAGCTTTCTTT CASSQFPPCSRARIFEAEAFF TRBV4-3*01 TRBJ1-1*01 1.0 16.0 CAMKDDYKLSF_CASSQFPPCSRARIFEAEAFF 1 5288 PGT-178 PGT 0.84 1480 PGT-178 119 5169 3 HomoSapiens PGT LLAGIGTVPI Naive T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*02:01 B2M MHCI -13547 chip0516_598935 9.97 7.41 Chip4 healthy_6 healthy TGCGCCAGCAGCGGGGACGGAATGAACACTGAAGCTTTCTTT CASSGDGMNTEAFF TRBV10-2*01 TRBJ1-1*01 2.0 144.0 _CASSGDGMNTEAFF 131 9204 EBV-LMP2A EBV 0.96 700 EBV-LMP2A 105 9099 10 EBV LMP2A CLGGLLTMV effector memory T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*02:01 B2M MHCI -13548 chip0516_257823 12.22 7.33 Chip4 healthy_8 healthy TGCATCCTGCCCCTTGCTGGTGGTACTAGCTATGGAAAGCTGACATTT CILPLAGGTSYGKLTF TRAV26-2*01 TRAJ52*01 24.0 876.0 TGTGCCAGCAGCTTAGGACAGGCCTACGAGCAGTACTTC CASSLGQAYEQYF TRBV7-8*01 TRBJ2-7*01 32.0 1597.0 CILPLAGGTSYGKLTF_CASSLGQAYEQYF 308 4103 EBNA3A-193-201 EBV 0.87 1022 EBNA3A-193-201 133 3970 10 EBV EBNA3A FLRGRAYGL effector memory T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-B*08:01 B2M MHCI -13549 chip0516_16430 10.9 11.57 Chip4 healthy_6 healthy TGTGCTGTTCTAATGGATAGCAACTATCAGTTAATCTGG CAVLMDSNYQLIW TRAV12-3*01 TRAJ33*01 1.0 15.0 CAVLMDSNYQLIW_ 20 4743 EBV-LMP2A EBV 0.91 700 EBV-LMP2A 115 4628 9 EBV LMP2A CLGGLLTMV effector memory T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*02:01 B2M MHCI -13550 chip0516_470684 -3.29 8.87 Chip4 healthy_8 healthy TGTGCTGTTGACAACAATGACATGCGCTTT CAVDNNDMRF TRAV21*01 TRAJ43*01 2.0 46.0 TGTGCCAGCAGTTTAGCCCGGGGTGGCAATCAGCCCCAGCATTTT CASSLARGGNQPQHF TRBV12-3*01,TRBV12-4*01 TRBJ1-5*01 13.0 676.0 CAVDNNDMRF_CASSLARGGNQPQHF 1 7271 IAPP-STN-9 IAPP 0.86 48 IAPP-STN-9 95 7176 2 HomoSapiens IAPP STNVGSNTY Naive T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*01:01 B2M MHCI -13551 chip0516_672041 5.71 9.48 Chip4 healthy_8 healthy TGTGCCGTGAAAGGGGACACCAATGCAGGCAAATCAACCTTT CAVKGDTNAGKSTF TRAV12-2*01 TRAJ27*01 6.0 236.0 CAVKGDTNAGKSTF_ 7 6221 EBNA3A-193-201 EBV 0.86 1022 EBNA3A-193-201 134 6087 6 EBV EBNA3A FLRGRAYGL central memory T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-B*08:01 B2M MHCI -13552 chip0516_627820 12.5 7.54 Chip4 healthy_8 healthy TGTGCCAGCAGCTTAGGACAGGCCTACGAGCAGTACTTC CASSLGQAYEQYF TRBV7-8*01 TRBJ2-7*01 3.0 189.0 _CASSLGQAYEQYF 175 4432 EBNA3A-193-201 EBV 0.91 1022 EBNA3A-193-201 112 4320 10 EBV EBNA3A FLRGRAYGL effector memory T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-B*08:01 B2M MHCI -13553 chip0516_211696 -2.94 8.77 Chip4 healthy_6 healthy _ 6746 5580 PGT-178 PGT 0.9 1480 PGT-178 110 5470 2 HomoSapiens PGT LLAGIGTVPI Naive T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*02:01 B2M MHCI -13554 chip0516_201546 11.63 9.32 Chip4 healthy_8 healthy TGTGCCAGCAGCTCCGGACAGGCCTACGAGCAGTACTTC CASSSGQAYEQYF TRBV7-8*01 TRBJ2-7*01 6.0 618.0 _CASSSGQAYEQYF 49 4809 EBNA3A-193-201 EBV 0.94 1022 EBNA3A-193-201 133 4676 10 EBV EBNA3A FLRGRAYGL effector memory T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-B*08:01 B2M MHCI -13555 chip0516_706579 -2.32 10.72 Chip4 healthy_9 healthy TGTGCCAGCAAGGGAGGGCCACACAATGAGCAGTTCTTC CASKGGPHNEQFF TRBV12-3*01,TRBV12-4*01 TRBJ2-1*01 37.0 2392.0 _CASKGGPHNEQFF 1 4772 INS-MAL-8 INS 0.41 38 NEG 104 4668 3 HomoSapiens INS MALWMRLL Naive T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-B*08:01 B2M MHCI -13556 chip0516_117024 -4.39 10.0 Chip4 healthy_7 healthy TGTGCCGTGAACGGTGGAGGAACTGCTCTGATCTTT CAVNGGGTALIF TRAV12-2*01 TRAJ15*01 22.0 1842.0 TGTGCCAGCAGCGTAGGGGCAGGTGAGCAGTTCTTC CASSVGAGEQFF TRBV9*01 TRBJ2-1*01 19.0 1641.0 CAVNGGGTALIF_CASSVGAGEQFF 1 5422 MART1-ALA MART1 0.42 269 NEG 108 5314 2 HomoSapiens MART1 ALAGIGILTV Naive T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*02:01 B2M MHCI -13557 chip0516_869456 12.28 7.23 Chip4 healthy_6 healthy TGCGCCAGCAGCGGGGACGGAATGAACACTGAAGCTTTCTTT CASSGDGMNTEAFF TRBV10-2*01 TRBJ1-1*01 2.0 22.0 _CASSGDGMNTEAFF 131 5921 EBV-LMP2A EBV 0.83 700 EBV-LMP2A 112 5809 10 EBV LMP2A CLGGLLTMV effector memory T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*02:01 B2M MHCI -13558 chip0516_724105 -3.4 11.87 Chip4 healthy_9 healthy TGTGCAGAGAATGCCTTCTATAACACCGACAAGCTCATCTTT CAENAFYNTDKLIF TRAV13-2*01 TRAJ34*01 3.0 134.0 CAENAFYNTDKLIF_ 1 5655 NP30-38 FLU 0.63 72 NEG 122 5533 1 InfluenzaA NP RPIIRPATL Naive T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-B*08:01 B2M MHCI -13559 chip0516_471554 -3.59 8.36 Chip4 healthy_9 healthy TGTGCAATGAGAGAGGGCCAGAATGCAGGCAACATGCTCACCTTT CAMREGQNAGNMLTF TRAV14/DV4*01 TRAJ39*01 30.0 2007.0 CAMREGQNAGNMLTF_ 1 6594 NP30-38 FLU 0.41 72 NP30-38 119 6475 2 InfluenzaA NP RPIIRPATL Naive T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-B*08:01 B2M MHCI -13560 chip0516_558420 10.37 8.89 Chip4 healthy_6 healthy _ 6746 6167 EBV-LMP2A EBV 0.94 700 EBV-LMP2A 113 6054 10 EBV LMP2A CLGGLLTMV effector memory T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*02:01 B2M MHCI -13561 chip0516_750304 6.85 12.93 Chip4 healthy_8 healthy _ 6746 4370 NP30-38 FLU 0.53 72 NP30-38 107 4263 7 InfluenzaA NP RPIIRPATL transitional T cells between effector and memory populations PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-B*08:01 B2M MHCI -13562 chip0516_797262 15.86 10.81 Chip4 healthy_8 healthy TGTGCCAGCAGCTTAGGACAGGCCTACGAGCAGTACTTC CASSLGQAYEQYF TRBV7-8*01 TRBJ2-7*01 23.0 1292.0 _CASSLGQAYEQYF 175 3059 EBNA3A-193-201 EBV 0.89 1022 EBNA3A-193-201 140 2919 12 EBV EBNA3A FLRGRAYGL effector T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-B*08:01 B2M MHCI -13563 chip0516_652891 9.47 8.98 Chip4 healthy_6 healthy _ 6746 9347 EBV-LMP2A EBV 0.95 700 EBV-LMP2A 148 9199 8 EBV LMP2A CLGGLLTMV effector memory T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*02:01 B2M MHCI -13564 chip0516_6677 10.12 10.28 Chip4 tet_neg _ 6746 6304 NP140-148 FLU 0.54 102 NEG 122 6182 9 InfluenzaA NP HSNLNDATY effector memory T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*01:01 B2M MHCI -13565 chip0516_191981 9.92 10.22 Chip4 healthy_6 healthy TGTGCTGTGGCCCTCTCAAGCAAATCAACCTTT CAVALSSKSTF TRAV8-3*01 TRAJ27*01 8.0 1187.0 CAVALSSKSTF_ 58 5936 EBV-LMP2A EBV 0.94 700 EBV-LMP2A 120 5816 9 EBV LMP2A CLGGLLTMV effector memory T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*02:01 B2M MHCI -13566 chip0516_132362 -2.28 12.58 Chip4 healthy_8 healthy TGTGGCAGTGGAGGTAGCAACTATAAACTGACATTT CGSGGSNYKLTF TRAV30*01 TRAJ53*01 10.0 910.0 TGCAGTGCCGGGCAGGACACTACCCGGGTTGGGGATGAGCAGTTCTTC CSAGQDTTRVGDEQFF TRBV20-1*01 TRBJ2-1*01 2.0 49.0 CGSGGSNYKLTF_CSAGQDTTRVGDEQFF 1 4732 G6PC2-NLI-8 IGRP 0.47 32 NEG 118 4614 1 HomoSapiens G6PC2 NLIFKWIL Naive T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-B*08:01 B2M MHCI -13567 chip0516_370720 -2.93 13.18 Chip4 healthy_9 healthy TGTGCCAGCAGCTACCGGGGTTTAGACAAGCAGTACTTC CASSYRGLDKQYF TRBV5-4*01 TRBJ2-7*01 13.0 802.0 _CASSYRGLDKQYF 1 3503 ZNT8-YAK-9 ZNT8 0.53 59 ZNT8-YAK-9 113 3390 1 HomoSapiens ZNT8 YAKWKLCSA Naive T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-B*08:01 B2M MHCI -13568 chip0516_356352 -3.25 10.19 Chip4 healthy_7 healthy TGTGCAGCAAGTATACGAGAGACGGGGAGGGAACAAACTCACCTTT CAASIREac??ggGGNKLTF TRAV13-1*01 TRAJ10*01 1.0 33.0 TGTGCCCGCAGTTTACGCCAGGGTTTGCAGACTCAGTACTTC CARSLRQGLQTQYF TRBV28*01 TRBJ2-5*01 2.0 191.0 CAASIREac??ggGGNKLTF_CARSLRQGLQTQYF 1 6062 PGT-178 PGT 0.76 1480 PGT-178 99 5963 2 HomoSapiens PGT LLAGIGTVPI Naive T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*02:01 B2M MHCI -13569 chip0516_749785 -4.77 9.63 Chip4 healthy_9 healthy TGTGCAGCATTCAACTATCAGTTAATCTGG CAAFNYQLIW TRAV13-1*01 TRAJ33*01 7.0 811.0 TGTGCCAGCAGCTATGGACAGGGCAATGAGCAGTTCTTC CASSYGQGNEQFF TRBV7-3*01 TRBJ2-1*01 11.0 541.0 CAAFNYQLIW_CASSYGQGNEQFF 1 5348 BZLF1-190-197 EBV 0.68 2156 BZLF1-190-197 95 5253 2 EBV BZLF1 RAKFKQLL Naive T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-B*08:01 B2M MHCI -13570 chip0516_583266 -2.8 9.95 Chip4 healthy_8 healthy _ 6746 4890 G6PC2-NLI-8 IGRP 0.68 32 G6PC2-NLI-8 98 4792 3 HomoSapiens G6PC2 NLIFKWIL Naive T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-B*08:01 B2M MHCI -13571 chip0516_754306 -0.61 4.52 Chip4 healthy_6 healthy TGTGCCAGCAGACAATACGACAGGGACACCGGGGAGCTGTTTTTT CASRQYDRDTGELFF TRBV27*01 TRBJ2-2*01 46.0 2245.0 _CASRQYDRDTGELFF 1 6668 GAD65-114-122 GAD65 0.89 63 GAD65-114-122 107 6561 5 HomoSapiens GAD65 VMNILLQYV natural killer-like T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*02:01 B2M MHCI -13572 chip0516_613126 12.16 6.48 Chip4 healthy_6 healthy TGTGCCAGCAGTCAACAGGGGGGTAACTATGGCTACACCTTC CASSQQGGNYGYTF TRBV6-1*01 TRBJ1-2*01 32.0 1953.0 _CASSQQGGNYGYTF 5 6379 EBV-LMP2-FLY EBV 0.97 355 EBV-LMP2-FLY 131 6248 10 EBV LMP2 FLYALALLL effector memory T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*02:01 B2M MHCI -13573 chip0516_310360 11.22 7.7 Chip4 healthy_8 healthy TGTGCCAGCAGCTTAGGACAGGCCTACGAGCAGTACTTC CASSLGQAYEQYF TRBV7-8*01 TRBJ2-7*01 10.0 377.0 _CASSLGQAYEQYF 175 6007 EBNA3A-193-201 EBV 0.8 1022 EBNA3A-193-201 141 5866 10 EBV EBNA3A FLRGRAYGL effector memory T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-B*08:01 B2M MHCI -13574 chip0516_722149 11.45 8.53 Chip4 healthy_8 healthy TGCATCCTGCCCCTTGCTGGTGGTACTAGCTATGGAAAGCTGACATTT CILPLAGGTSYGKLTF TRAV26-2*01 TRAJ52*01 37.0 2664.0 TGTGCCAGCAGCTTAGGACAGGCCTACGAGCAGTACTTC CASSLGQAYEQYF TRBV7-8*01 TRBJ2-7*01 71.0 5050.0 CILPLAGGTSYGKLTF_CASSLGQAYEQYF 308 5650 EBNA3A-193-201 EBV 0.85 1022 EBNA3A-193-201 122 5528 10 EBV EBNA3A FLRGRAYGL effector memory T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-B*08:01 B2M MHCI -13575 chip0516_605012 6.82 13.09 Chip4 healthy_8 healthy TGTGTTGTGAGTGATCGAAACTTCAACAAATTTTACTTT CVVSDRNFNKFYF TRAV8-2*01 TRAJ21*01 1.0 22.0 TGTGCCAGCAGTTGGACAGTCGGTGCAGATACGCAGTATTTT CASSWTVGADTQYF TRBV6-5*01 TRBJ2-3*01 2.0 40.0 CVVSDRNFNKFYF_CASSWTVGADTQYF 1 5226 NP44-52 FLU 0.93 474 NP44-52 106 5120 7 InfluenzaA NP CTELKLSDY transitional T cells between effector and memory populations PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*01:01 B2M MHCI -13576 chip0516_410162 12.07 7.92 Chip4 healthy_8 healthy TGTGCCAGCAGCTTAGGACAGGCCTACGAGCAGTACTTC CASSLGQAYEQYF TRBV7-8*01 TRBJ2-7*01 20.0 1568.0 _CASSLGQAYEQYF 175 4805 EBNA3A-193-201 EBV 0.87 1022 EBNA3A-193-201 129 4676 10 EBV EBNA3A FLRGRAYGL effector memory T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-B*08:01 B2M MHCI -13577 chip0516_861315 9.75 9.69 Chip4 healthy_6 healthy _ 6746 6252 EBV-LMP2A EBV 0.87 700 EBV-LMP2A 123 6129 8 EBV LMP2A CLGGLLTMV effector memory T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*02:01 B2M MHCI -13578 chip0516_817583 6.85 13.12 Chip4 healthy_9 healthy TGTGCCAGCAGCTTGGTCCGGGACTACGAGCAGTACTTC CASSLVRDYEQYF TRBV5-6*01 TRBJ2-7*01 10.0 571.0 _CASSLVRDYEQYF 1 3451 LMP2A-CPL EBV 0.78 44 LMP2A-CPL 116 3335 7 EBV LMP2A CPLSKILL transitional T cells between effector and memory populations PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-B*08:01 B2M MHCI -13579 chip0516_184853 11.1 9.65 Chip4 healthy_6 healthy TGTGCTGTTCTAATGGATAGCAACTATCAGTTAATCTGG CAVLMDSNYQLIW TRAV21*01 TRAJ33*01 25.0 1532.0 CAVLMDSNYQLIW_ 20 6612 EBV-LMP2A EBV 1.0 700 EBV-LMP2A 126 6486 9 EBV LMP2A CLGGLLTMV effector memory T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*02:01 B2M MHCI -13580 chip0516_750024 -2.77 8.5 Chip4 healthy_8 healthy TGTGCTGTGAGATTATCAGGAGGAAGCTACATACCTACATTT CAVRLSGGSYIPTF TRAV1-2*01 TRAJ6*01 27.0 2030.0 CAVRLSGGSYIPTF_ 1 6305 GAD2-EAK-10 GAD65 0.66 14 GAD2-EAK-10 101 6204 2 HomoSapiens GAD2 EAKQKGFVPF Naive T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-B*08:01 B2M MHCI -13581 chip0516_606217 8.64 11.73 Chip4 healthy_8 healthy TGCATCCTGCCCCTTGCTGGTGGTACTAGCTATGGAAAGCTGACATTT CILPLAGGTSYGKLTF TRAV26-2*01 TRAJ52*01 24.0 1437.0 TGTGCCAGCAGCTCCGGACAGGCCTACGAGCAGTACTTC CASSSGQAYEQYF TRBV7-8*01 TRBJ2-7*01 33.0 1954.0 CILPLAGGTSYGKLTF_CASSSGQAYEQYF 40 4412 EBNA3A-193-201 EBV 0.91 1022 EBNA3A-193-201 100 4312 7 EBV EBNA3A FLRGRAYGL transitional T cells between effector and memory populations PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-B*08:01 B2M MHCI -13582 chip0516_513022 -3.44 8.94 Chip4 healthy_7 healthy TGTGCAATGAGAGACTTGGTGGACACCGGTAACCAGTTCTATTTT CAMRDLVDTGNQFYF TRAV14/DV4*01 TRAJ49*01 10.0 419.0 TGTGCCAGCAGTTTTAAGGGGGCGGAGGGCTACACCTTC CASSFKGAEGYTF TRBV6-5*01 TRBJ1-2*01 48.0 2300.0 CAMRDLVDTGNQFYF_CASSFKGAEGYTF 1 5565 PGT-178 PGT 0.82 1480 PGT-178 108 5457 2 HomoSapiens PGT LLAGIGTVPI Naive T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*02:01 B2M MHCI -13583 chip0516_444538 11.13 9.66 Chip4 healthy_6 healthy _ 6746 7106 EBV-LMP2A EBV 0.74 700 EBV-LMP2A 107 6999 9 EBV LMP2A CLGGLLTMV effector memory T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*02:01 B2M MHCI -13584 chip0516_852824 10.22 8.71 Chip4 healthy_6 healthy TGCGCCAGCAGCGGGGACGGAATGAACACTGAAGCTTTCTTT CASSGDGMNTEAFF TRBV10-2*01 TRBJ1-1*01 2.0 17.0 _CASSGDGMNTEAFF 131 6229 EBV-LMP2A EBV 0.86 700 EBV-LMP2A 114 6115 8 EBV LMP2A CLGGLLTMV effector memory T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*02:01 B2M MHCI -13585 chip0516_832641 11.95 8.64 Chip4 healthy_9 healthy TGCGCCAGCGACCCGGACGGATACAATGAGCAGTTCTTC CASDPDGYNEQFF TRBV5-1*01 TRBJ2-1*01 35.0 2975.0 _CASDPDGYNEQFF 1 3494 ZNT8-VTD-9 ZNT8 0.73 65 NEG 110 3384 10 HomoSapiens ZNT8 VTDAAHLLI effector memory T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*01:01 B2M MHCI -13586 chip0516_357121 10.24 11.08 Chip4 healthy_6 healthy TGTGCTGTTCTAATGGATAGCAACTATCAGTTAATCTGG CAVLMDSNYQLIW TRAV21*01,TRAV12-3*01 TRAJ33*01 15.0 1706.0 TGCGCCAGCAGCCAAGGGGGGGGGGCTAATGAGCAGTTCTTC CASSQGGGANEQFF TRBV4-1*01 TRBJ2-1*01 2.0 68.0 CAVLMDSNYQLIW_CASSQGGGANEQFF 1 5911 EBV-LMP2A EBV 0.96 700 EBV-LMP2A 121 5790 9 EBV LMP2A CLGGLLTMV effector memory T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*02:01 B2M MHCI -13587 chip0516_684607 10.58 10.51 Chip4 healthy_6 healthy TGCGCCAGCAGCGGGGACGGAATGAACACTGAAGCTTTCTTT CASSGDGMNTEAFF TRBV10-2*01 TRBJ1-1*01 25.0 1853.0 _CASSGDGMNTEAFF 131 5627 EBV-LMP2A EBV 0.9 700 EBV-LMP2A 109 5518 9 EBV LMP2A CLGGLLTMV effector memory T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*02:01 B2M MHCI -13588 chip0516_36781 9.89 9.52 Chip4 healthy_6 healthy TGCGCCAGCAGCGGGGACGGAATGAACACTGAAGCTTTCTTT CASSGDGMNTEAFF TRBV10-2*01 TRBJ1-1*01 34.0 1998.0 _CASSGDGMNTEAFF 131 6158 EBV-LMP2A EBV 0.93 700 EBV-LMP2A 131 6027 8 EBV LMP2A CLGGLLTMV effector memory T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*02:01 B2M MHCI -13589 chip0516_546688 11.93 13.38 Chip4 healthy_8 healthy TGCATCCTGCCCGTTGCTGGTGGTACTAGCTATGGAACGCTGACATTT CILPVAGGTSYGTLTF TRAV26-2*01 TRAJ52*01 20.0 937.0 CILPVAGGTSYGTLTF_ 1 2421 EBNA3A-193-201 EBV 0.91 1022 EBNA3A-193-201 114 2307 11 EBV EBNA3A FLRGRAYGL effector T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-B*08:01 B2M MHCI -13590 chip0516_297854 5.39 9.44 Chip4 healthy_6 healthy TGCACCAGCAGCGGGGACGGAATGAACACTGAAGCTTTCTTT CTSSGDGMNTEAFF TRBV10-2*01 TRBJ1-1*01 1.0 106.0 _CTSSGDGMNTEAFF 1 8836 EBV-LMP2A EBV 0.96 700 EBV-LMP2A 139 8697 6 EBV LMP2A CLGGLLTMV central memory T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*02:01 B2M MHCI -13591 chip0516_120180 -2.06 12.41 Chip4 healthy_9 healthy TGTGCAATGAGATACTATGGTGGTGCTACAAACAAGCTCATCTTT CAMRYYGGATNKLIF TRAV14/DV4*01 TRAJ32*01 42.0 2046.0 CAMRYYGGATNKLIF_ 1 3392 M1-ALA FLU 0.59 10 M1-ALA 114 3278 1 InfluenzaA M1 ALASCMGLIY Naive T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*01:01 B2M MHCI -13592 chip0516_738854 9.77 10.24 Chip4 healthy_6 healthy TGCGCCAGCAGCGGGGACGGAATGAACACTGAAGCTTTCTTT CASSGDGMNTEAFF TRBV10-2*01 TRBJ1-1*01 2.0 39.0 _CASSGDGMNTEAFF 131 7206 EBV-LMP2A EBV 1.0 700 EBV-LMP2A 107 7099 9 EBV LMP2A CLGGLLTMV effector memory T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*02:01 B2M MHCI -13593 chip0516_606016 -2.7 10.31 Chip4 healthy_8 healthy TGTGCCAGCAGCGCACCGGGACAGGCCAACGAGCAGTACTTC CASSAPGQANEQYF TRBV7-9*01 TRBJ2-7*01 39.0 2881.0 _CASSAPGQANEQYF 1 5701 gp160-586-593 HIV 0.84 30 gp160-586-593 89 5612 3 HIV-1 gp160 YLKDQQLL Naive T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-B*08:01 B2M MHCI -13594 chip0516_195229 5.71 12.46 Chip4 healthy_7 healthy _ 6746 5165 M1 FLU 0.85 1250 M1 114 5051 7 InfluenzaA M1 GILGFVFTL transitional T cells between effector and memory populations PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*02:01 B2M MHCI -13595 chip0516_79119 6.2 9.66 Chip4 healthy_6 healthy TGTGCATCCGCCACCAATGCAGGCAAATCAACCTTT CASATNAGKSTF TRAV17*01 TRAJ27*01 21.0 2048.0 TGCAGTGCACCCCCGGGGGAGCGGGAGTACGGTGAGCAGTTCTTC CSAPPGEREYGEQFF TRBV20-1*01 TRBJ2-1*01 31.0 1824.0 CASATNAGKSTF_CSAPPGEREYGEQFF 1 12141 EBV-LMP2A EBV 0.81 700 EBV-LMP2A 136 12005 6 EBV LMP2A CLGGLLTMV central memory T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*02:01 B2M MHCI -13596 chip0516_531080 11.34 7.57 Chip4 healthy_6 healthy TGCGCTGTGAGAGATGCGGGAGGAGGAAACAAACTCACCTTT CAVRDAGGGNKLTF TRAV1-1*01 TRAJ10*01 1.0 21.0 CAVRDAGGGNKLTF_ 1 5934 EBV-LMP2A EBV 0.98 700 EBV-LMP2A 123 5811 10 EBV LMP2A CLGGLLTMV effector memory T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*02:01 B2M MHCI -13597 chip0516_749094 15.23 12.74 Chip4 healthy_8 healthy TGTGCCAGCAGCTTAGGACAGGCCTACGAGCAGTACTTC CASSLGQAYEQYF TRBV7-8*01 TRBJ2-7*01 15.0 1338.0 _CASSLGQAYEQYF 175 2436 EBNA3A-193-201 EBV 0.5 1022 EBNA3A-193-201 109 2327 12 EBV EBNA3A FLRGRAYGL effector T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-B*08:01 B2M MHCI -13598 chip0516_451860 -2.9 7.97 Chip4 healthy_8 healthy TGTGCAGACGTAGATGGCCAGAAGCTGCTCTTT CADVDGQKLLF TRAV13-2*01 TRAJ16*01 32.0 4122.0 TGCATCCTGAGATCTCAAAGCTGCAGGCAACAAGCTAACTTTT CILRSQS??tAGNKLTF TRAV26-2*01 TRAJ17*01 61.0 3613.0 0.56 TGCGCCAGCAGCCAAGGACAGGGAGGTTCCCAGCATTTT CASSQGQGGSQHF TRBV4-1*01 TRBJ1-5*01 27.0 1124.0 CADVDGQKLLF_CASSQGQGGSQHF 1 8239 INS-LWM-8 INS 0.52 11 INS-LWM-8 111 8128 2 HomoSapiens INS LWMRLLPL Naive T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-B*08:01 B2M MHCI -13599 chip0516_506538 -1.74 9.87 Chip4 healthy_7 healthy TGTGCCGTGAACGCAGGCAAATCAACCTTT CAVNAGKSTF TRAV12-2*01 TRAJ27*01 1.0 30.0 TGTGCCAGCAGTACCCTCGACAGGGGCACAGATACGCAGTATTTT CASSTLDRGTDTQYF TRBV28*01 TRBJ2-3*01 2.0 118.0 CAVNAGKSTF_CASSTLDRGTDTQYF 1 4656 PGT-178 PGT 0.71 1480 PGT-178 110 4546 3 HomoSapiens PGT LLAGIGTVPI Naive T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*02:01 B2M MHCI -13600 chip0516_135892 9.95 9.92 Chip4 healthy_6 healthy TGCGCCAGCAGCGGGGACGGAATGAACACTGAAGCTTTCTTT CASSGDGMNTEAFF TRBV10-2*01 TRBJ1-1*01 7.0 145.0 _CASSGDGMNTEAFF 131 5843 EBV-LMP2A EBV 0.91 700 EBV-LMP2A 113 5730 9 EBV LMP2A CLGGLLTMV effector memory T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*02:01 B2M MHCI -13601 chip0516_665229 11.41 6.72 Chip4 healthy_6 healthy TGTGCTGTGGCCCTCTCAAGCAAATCAACCTTT CAVALSSKSTF TRAV8-3*01 TRAJ27*01 1.0 174.0 CAVALSSKSTF_ 58 8032 EBV-LMP2A EBV 0.86 700 EBV-LMP2A 116 7916 10 EBV LMP2A CLGGLLTMV effector memory T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*02:01 B2M MHCI -13602 chip0516_665010 -0.03 9.12 Chip4 healthy_9 healthy _ 6746 4421 IAPP-LNH-9 IAPP 0.79 15 IAPP-LNH-9 107 4314 4 HomoSapiens IAPP LNHLKATPI Naive T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-B*08:01 B2M MHCI -13603 chip0516_404456 -0.41 7.03 Chip4 healthy_9 healthy TTTCCTGTCAGCCTCACCTTCATAACCAGGGACGAAAGCATAACACC FPVSLTFat?NQGRKHNT TRAV21*01 TRAJ23*01 10.0 1781.0 FPVSLTFat?NQGRKHNT_ 1 8123 NP44-52 FLU 0.58 474 NP44-52 131 7992 3 InfluenzaA NP CTELKLSDY Naive T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*01:01 B2M MHCI -13604 chip0516_617217 11.67 8.41 Chip4 healthy_6 healthy TGTGCCAGCAGCTCCTCCGCCCTAATCAGCGATGAGCAGTTCTTC CASSSSALISDEQFF TRBV11-2*01 TRBJ2-1*01 12.0 893.0 _CASSSSALISDEQFF 6 3966 EBV-BRLF1 EBV 1.0 1264 EBV-BRLF1 105 3861 10 EBV BRLF1 YVLDHLIVV effector memory T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*02:01 B2M MHCI -13605 chip0516_128583 11.02 8.17 Chip4 healthy_6 healthy TGTGCTGTTCTAATGGATAGCAACTATCAGTTAATCTGG CAVLMDSNYQLIW TRAV21*01 TRAJ33*01 16.0 1337.0 TGCGCCAGCAGCGGGGACGGAATGAACACTGAAGCTTTCTTT CASSGDGMNTEAFF TRBV10-2*01 TRBJ1-1*01 1.0 10.0 CAVLMDSNYQLIW_CASSGDGMNTEAFF 20 7093 EBV-LMP2A EBV 0.92 700 EBV-LMP2A 132 6961 10 EBV LMP2A CLGGLLTMV effector memory T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*02:01 B2M MHCI -13606 chip0516_330744 -2.04 9.75 Chip4 healthy_9 healthy _ 6746 4696 GAD2-MMI-8 GAD65 0.67 40 GAD2-MMI-8 110 4586 3 HomoSapiens GAD2 MMIARFKM Naive T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-B*08:01 B2M MHCI -13607 chip0516_100473 10.41 9.44 Chip4 healthy_6 healthy TGTGCTGTGGCCCTCTCAAGCAAATCAACCTTT CAVALSSKSTF TRAV8-3*01 TRAJ27*01 7.0 266.0 CAVALSSKSTF_ 58 6050 EBV-LMP2A EBV 0.95 700 EBV-LMP2A 112 5938 9 EBV LMP2A CLGGLLTMV effector memory T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*02:01 B2M MHCI -13608 chip0516_676612 11.05 12.32 Chip4 healthy_6 healthy _ 6746 4453 EBV-LMP2A EBV 1.0 700 EBV-LMP2A 100 4353 11 EBV LMP2A CLGGLLTMV effector T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*02:01 B2M MHCI -13609 chip0516_877268 8.8 8.17 Chip4 healthy_8 healthy TGTGCCAGCAGCTCCGGACAGGCCTACGAGCAGTACTTC CASSSGQAYEQYF TRBV7-8*01 TRBJ2-7*01 8.0 348.0 _CASSSGQAYEQYF 49 5908 EBNA3A-193-201 EBV 0.96 1022 EBNA3A-193-201 100 5808 8 EBV EBNA3A FLRGRAYGL effector memory T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-B*08:01 B2M MHCI -13610 chip0516_808861 -3.96 9.83 Chip4 healthy_7 healthy _ 6746 6372 M1 FLU 0.78 1250 NEG 109 6263 2 InfluenzaA M1 GILGFVFTL Naive T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*02:01 B2M MHCI -13611 chip0516_818462 -0.59 10.29 Chip4 healthy_8 healthy TGTGCTTATAGTGGTGCTACAAACAAGCTCATCTTT CAYSGATNKLIF TRAV38-1*01 TRAJ32*01 7.0 782.0 TGTGCCAGCAGCCTCAACAGCTACAATCAGCCCCAGCATTTT CASSLNSYNQPQHF TRBV2*01 TRBJ1-5*01 12.0 715.0 CAYSGATNKLIF_CASSLNSYNQPQHF 1 7383 GFAP-EGH-9 GFAP 1.0 4 GFAP-EGH-9 112 7271 3 HomoSapiens GFAP EGHLKRNIV Naive T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-B*08:01 B2M MHCI -13612 chip0516_396686 10.83 8.85 Chip4 healthy_6 healthy TGTGCTGTTCTAATGGATAGCAACTATCAGTTAATCTGG CAVLMDSNYQLIW TRAV21*01 TRAJ33*01 1.0 115.0 TGTGCTGTGGCCCTCTCAAGCAAATCAACCTTT CAVALSSKSTF TRAV8-3*01 TRAJ27*01 1.0 39.0 0.5 TGCGCCAGCAGCGGGGACGGAATGAACACTGAAGCTTTCTTT CASSGDGMNTEAFF TRBV10-2*01 TRBJ1-1*01 1.0 77.0 CAVLMDSNYQLIW_CASSGDGMNTEAFF 20 6116 EBV-LMP2A EBV 0.93 700 EBV-LMP2A 149 5967 10 EBV LMP2A CLGGLLTMV effector memory T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*02:01 B2M MHCI -13613 chip0516_248445 6.59 11.26 Chip4 healthy_8 healthy _ 6746 6593 BZLF1-190-197 EBV 0.5 2156 NEG 132 6461 7 EBV BZLF1 RAKFKQLL transitional T cells between effector and memory populations PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-B*08:01 B2M MHCI -13614 chip0516_214657 9.93 10.22 Chip4 healthy_6 healthy TGTGCTGTGGCCCTCTCAAGCAAATCAACCTTT CAVALSSKSTF TRAV8-3*01 TRAJ27*01 4.0 579.0 CAVALSSKSTF_ 58 5275 EBV-LMP2A EBV 0.9 700 EBV-LMP2A 111 5164 9 EBV LMP2A CLGGLLTMV effector memory T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*02:01 B2M MHCI -13615 chip0516_350789 5.01 10.46 Chip4 healthy_8 healthy TGCATCCTGCCCCTTGCTGGTGGTACTAGCTATGGAAAGCTGACATCT CILPLAGGTSYGKLTS TRAV26-2*01 TRAJ52*01 2.0 53.0 TGTGCCAGCAGCTTAGGACAGGCCTACGAGCAGTACTTC CASSLGQAYEQYF TRBV7-8*01 TRBJ2-7*01 4.0 206.0 CILPLAGGTSYGKLTS_CASSLGQAYEQYF 1 6425 EBNA3A-193-201 EBV 0.9 1022 EBNA3A-193-201 103 6322 6 EBV EBNA3A FLRGRAYGL central memory T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-B*08:01 B2M MHCI -13616 chip0516_687165 10.28 9.81 Chip4 healthy_6 healthy _ 6746 5245 EBV-LMP2A EBV 0.96 700 EBV-LMP2A 124 5121 9 EBV LMP2A CLGGLLTMV effector memory T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*02:01 B2M MHCI -13617 chip0516_228789 5.47 8.63 Chip4 healthy_6 healthy TGTGCCAGCAGTGATCAGGGGGGTGGCTATGGCTACACCTTC CASSDQGGGYGYTF TRBV6-1*01 TRBJ1-2*01 27.0 1905.0 _CASSDQGGGYGYTF 1 8008 EBV-LMP2-FLY EBV 0.95 355 EBV-LMP2-FLY 137 7871 6 EBV LMP2 FLYALALLL central memory T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*02:01 B2M MHCI -13618 chip0516_764520 -3.61 9.4 Chip4 healthy_6 healthy TGTGCCCGCAGTTACGGCGGGCGCACAGATACGCAGTATTTT CARSYGGRTDTQYF TRBV6-5*01 TRBJ2-3*01 11.0 497.0 _CARSYGGRTDTQYF 1 5239 PGT-178 PGT 0.91 1480 PGT-178 105 5134 2 HomoSapiens PGT LLAGIGTVPI Naive T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*02:01 B2M MHCI -13619 chip0516_296368 -2.23 8.17 Chip4 healthy_6 healthy _ 6746 6964 IAPP-5-13 IAPP 0.64 30 NEG 98 6866 3 HomoSapiens IAPP KLQVFLIVL Naive T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*02:01 B2M MHCI -13620 chip0516_338935 15.25 10.96 Chip4 healthy_8 healthy TGTGCCAGCAGCTTCGGAGTGGGGGAGGGCACTGAAGCTTTCTTT CASSFGVGEGTEAFF TRBV7-3*01 TRBJ1-1*01 45.0 2566.0 _CASSFGVGEGTEAFF 3 4078 BZLF1-190-197 EBV 0.86 2156 BZLF1-190-197 130 3948 12 EBV BZLF1 RAKFKQLL effector T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-B*08:01 B2M MHCI -13621 chip0516_868361 12.04 7.21 Chip4 healthy_6 healthy _ 6746 6408 EBV-LMP2A EBV 0.85 700 EBV-LMP2A 102 6306 10 EBV LMP2A CLGGLLTMV effector memory T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*02:01 B2M MHCI -13622 chip0516_437906 10.92 10.73 Chip4 healthy_6 healthy TGTGCTGTGGCCCTCTCAAGCAAATCAACCTTT CAVALSSKSTF TRAV8-3*01 TRAJ27*01 4.0 461.0 TGCGCCAGCAGCGGGGACGGAATGAACACTGAAGCTTTCTTT CASSGDGMNTEAFF TRBV10-2*01 TRBJ1-1*01 29.0 1528.0 CAVALSSKSTF_CASSGDGMNTEAFF 50 5637 EBV-LMP2A EBV 0.97 700 EBV-LMP2A 112 5525 9 EBV LMP2A CLGGLLTMV effector memory T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*02:01 B2M MHCI -13623 chip0516_380785 -1.66 10.4 Chip4 healthy_7 healthy TGTGCTCTAACTAATGCTGGTGGTACTAGCTATGGAAAGCTGACATTT CALTNAGGTSYGKLTF TRAV16*01 TRAJ52*01 33.0 2068.0 TGTGCCTGGAGTGTAGGGGGCAATGAGCAGTTCTTC CAWSVGGNEQFF TRBV30*01 TRBJ2-1*01 33.0 2440.0 CALTNAGGTSYGKLTF_CAWSVGGNEQFF 1 4640 ROTA-VP3 ROTA 0.67 41 NEG 115 4525 3 RotavirusA VP3 YLLPGWKL Naive T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*02:01 B2M MHCI -13624 chip0516_574815 -1.89 10.82 Chip4 healthy_6 healthy TGTGCCTCCCCGGCGGATAGCAACTATCAGTTAATCTGG CASPADSNYQLIW TRAV24*01 TRAJ33*01 27.0 1281.0 CASPADSNYQLIW_ 1 4662 MART1-ALA MART1 0.86 269 NEG 110 4552 3 HomoSapiens MART1 ALAGIGILTV Naive T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*02:01 B2M MHCI -13625 chip0516_167217 12.32 9.37 Chip4 healthy_8 healthy TGTGCCAGCAGCTCCGGACAGGCCTACGAGCAGTACTTC CASSSGQAYEQYF TRBV7-8*01 TRBJ2-7*01 20.0 1323.0 _CASSSGQAYEQYF 49 4060 EBNA3A-193-201 EBV 0.9 1022 EBNA3A-193-201 111 3949 10 EBV EBNA3A FLRGRAYGL effector memory T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-B*08:01 B2M MHCI -13626 chip0516_475319 -3.19 11.28 Chip4 healthy_9 healthy TGTGCCGTGAACGAGGGAGGTGCTGACGGACTCACCTTT CAVNEGGADGLTF TRAV12-2*01 TRAJ45*01 19.0 1589.0 CAVNEGGADGLTF_ 1 5339 NP225-233 FLU 0.55 23 NP225-233 89 5250 1 InfluenzaA NP ILKGKFQTA Naive T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-B*08:01 B2M MHCI -13627 chip0516_491028 -2.22 13.74 Chip4 healthy_10 healthy _ 6746 4183 EBNA3A-158-166 EBV 0.68 444 EBNA3A-158-166 124 4059 1 EBV EBNA3A QAKWRLQTL Naive T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-B*08:01 B2M MHCI -13628 chip0516_95461 7.87 12.19 Chip4 healthy_9 healthy _ 6746 3748 ZNT8-VTD-9 ZNT8 0.88 65 ZNT8-VTD-9 98 3650 7 HomoSapiens ZNT8 VTDAAHLLI transitional T cells between effector and memory populations PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*01:01 B2M MHCI -13629 chip0516_343015 -4.0 11.83 Chip4 healthy_8 healthy TGTGCAATGAGAGACGTGACTGGTGGTACTAGCTATGGAAAGCTGACATTT CAMRDVTGGTSYGKLTF TRAV14/DV4*01 TRAJ52*01 22.0 740.0 CAMRDVTGGTSYGKLTF_ 1 4099 ZNT8-YAK-9 ZNT8 0.7 59 NEG 106 3993 1 HomoSapiens ZNT8 YAKWKLCSA Naive T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-B*08:01 B2M MHCI -13630 chip0516_246186 9.22 9.71 Chip4 healthy_8 healthy TGTGTGGTGACTGCTTACTATGGGAACAACAGACTCGCCTCT CVVTAYYGNNRLAS TRAV12-1*01 TRAJ7*01 28.0 2017.0 TGCGCCAGCAGCCAAGTGGCAGGGGGTGGACAAGAGACCCAGTACTTC CASSQVAGGGQETQYF TRBV4-1*01 TRBJ2-5*01 25.0 1474.0 CVVTAYYGNNRLAS_CASSQVAGGGQETQYF 1 6441 G6PC2-NLI-9 IGRP 0.77 7 NEG 128 6313 8 HomoSapiens G6PC2 NLIFKWKSI effector memory T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-B*08:01 B2M MHCI -13631 chip0516_738629 11.06 11.53 Chip4 healthy_6 healthy TGTGCTGTGACCCTCTCAAGCAAATCAACCTTT CAVTLSSKSTF TRAV8-3*01 TRAJ27*01 2.0 241.0 CAVTLSSKSTF_ 1 3868 EBV-LMP2A EBV 0.56 700 NEG 122 3746 9 EBV LMP2A CLGGLLTMV effector memory T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*02:01 B2M MHCI -13632 chip0516_76079 11.09 7.85 Chip4 healthy_8 healthy TGCATCCTGCCCCTTGCTGGTGGTACTAGCTATGGAAAGCTGACATTT CILPLAGGTSYGKLTF TRAV26-2*01 TRAJ52*01 72.0 4751.0 TGTGCCAGCAGCTTAGGACAGGCCTACGAGCAGTACTTC CASSLGQAYEQYF TRBV7-8*01 TRBJ2-7*01 1.0 26.0 CILPLAGGTSYGKLTF_CASSLGQAYEQYF 308 5718 EBNA3A-193-201 EBV 0.69 1022 EBNA3A-193-201 105 5613 10 EBV EBNA3A FLRGRAYGL effector memory T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-B*08:01 B2M MHCI -13633 chip0516_80895 -0.27 9.14 Chip4 healthy_8 healthy TGTGCTCTGAGTGAGAAAGGGAGGTGCTGACGGACTCCCCTTT CALSEKG??aGADGLPF TRAV19*01 TRAJ45*01 28.0 1711.0 TGTGCCAGCAGCTCCAGGACAGGGACCGAGCAGTACTTC CASSSRTGTEQYF TRBV11-3*01 TRBJ2-7*01 16.0 760.0 CALSEKG??aGADGLPF_CASSSRTGTEQYF 1 6220 Pol173-181 HIV 0.69 8 Pol173-181 103 6117 4 HIV-1 Pol GPKVKQWPL Naive T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-B*08:01 B2M MHCI -13634 chip0516_779648 13.1 8.2 Chip4 healthy_6 healthy _ 6746 4459 EBV-LMP2A EBV 0.81 700 EBV-LMP2A 119 4340 10 EBV LMP2A CLGGLLTMV effector memory T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*02:01 B2M MHCI -13635 chip0516_108082 11.34 7.55 Chip4 healthy_7 healthy TGTGCCAGCAGCCAAGGGGGGCTTAATGAGCAGTTCTTC CASSQGGLNEQFF TRBV4-2*01 TRBJ2-1*01 22.0 1981.0 _CASSQGGLNEQFF 1 4503 HCVNS3-1073-1081 HCV 0.96 36 HCVNS3-1073-1081 105 4398 10 HCV NS3 CINGVCWTV effector memory T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*02:01 B2M MHCI -13636 chip0516_23101 11.29 10.97 Chip4 healthy_6 healthy TGCGCCAGCAGCGGGGACGGAATGAACACTGAAGCTTTCTTT CASSGDGMNTEAFF TRBV10-2*01 TRBJ1-1*01 5.0 388.0 _CASSGDGMNTEAFF 131 4740 EBV-LMP2A EBV 0.89 700 EBV-LMP2A 116 4624 9 EBV LMP2A CLGGLLTMV effector memory T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*02:01 B2M MHCI -13637 chip0516_294899 -1.51 8.27 Chip4 healthy_7 healthy TGTGCACCGGGAGGAGGAGGTGCTGACGGACTCACCTTT CAPGGGGADGLTF TRAV12-3*01 TRAJ45*01 18.0 956.0 TGTGCCAGCAGTCCGGTCGGCAGGGAATATGAGCAGTACTTC CASSPVGREYEQYF TRBV28*01 TRBJ2-7*01 5.0 266.0 CAPGGGGADGLTF_CASSPVGREYEQYF 1 5504 ZNT8-314-322 ZNT8 0.68 16 ZNT8-314-322 122 5382 3 HomoSapiens ZNT8 ILSAHVATA Naive T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*02:01 B2M MHCI -13638 chip0516_157965 11.85 8.8 Chip4 healthy_8 healthy _ 6746 3941 EBNA3A-193-201 EBV 0.7 1022 EBNA3A-193-201 106 3835 10 EBV EBNA3A FLRGRAYGL effector memory T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-B*08:01 B2M MHCI -13639 chip0516_463546 11.29 12.13 Chip4 healthy_6 healthy _ 6746 4185 EBV-LMP2A EBV 0.96 700 EBV-LMP2A 117 4068 9 EBV LMP2A CLGGLLTMV effector memory T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*02:01 B2M MHCI -13640 chip0516_387704 -2.35 8.46 Chip4 healthy_8 healthy TGTGCCAGCAGCTGGACAGGGGGACTCCAAGAGACCCAGTACTTC CASSWTGGLQETQYF TRBV7-3*01 TRBJ2-5*01 9.0 312.0 _CASSWTGGLQETQYF 1 6332 IAPP-STN-9 IAPP 0.88 48 IAPP-STN-9 124 6208 3 HomoSapiens IAPP STNVGSNTY Naive T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*01:01 B2M MHCI -13641 chip0516_97278 -3.39 10.75 Chip4 healthy_8 healthy TGCGCCACGGAGATTTCGGCTACCTCCTACGACAAGGTGATCTCT CATEISATSYDKVIS TRAV30*01 TRAJ50*01 5.0 151.0 TGCAGTGCGGAAGACAGGGTTTGGAGCAATGAGCAGTTCTTC CSAEDRVWSNEQFF TRBV20-1*01 TRBJ2-1*01 20.0 1762.0 CATEISATSYDKVIS_CSAEDRVWSNEQFF 1 5612 INS-MAL-8 INS 0.71 38 INS-MAL-8 123 5489 1 HomoSapiens INS MALWMRLL Naive T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-B*08:01 B2M MHCI -13642 chip0516_197079 -1.53 7.06 Chip4 healthy_9 healthy TGTGTGGTGAACCAGGAAAATTCCGGGTATGCACTCAACTTC CVVNQENSGYALNF TRAV12-1*01 TRAJ41*01 2.0 133.0 TGTGCCAGCTCAGCGGGGGGAATTTACAATGAGCAGTTCTTC CASSAGGIYNEQFF TRBV2*01 TRBJ2-1*01 24.0 1635.0 CVVNQENSGYALNF_CASSAGGIYNEQFF 1 5316 EBNA3A-158-166 EBV 0.55 444 EBNA3A-158-166 103 5213 3 EBV EBNA3A QAKWRLQTL Naive T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-B*08:01 B2M MHCI -13643 chip0516_614529 12.7 7.23 Chip4 healthy_8 healthy TGCATCCTGCCCCTTGCTGGTGGTACTAGCTATGGAAAGCTGACATTT CILPLAGGTSYGKLTF TRAV26-2*01 TRAJ52*01 19.0 966.0 TGTGCCAGCAGCTTAGGACAGGCCTACGAGCAGTACTTC CASSLGQAYEQYF TRBV7-8*01 TRBJ2-7*01 24.0 1260.0 CILPLAGGTSYGKLTF_CASSLGQAYEQYF 308 4243 EBNA3A-193-201 EBV 0.65 1022 EBNA3A-193-201 110 4133 10 EBV EBNA3A FLRGRAYGL effector memory T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-B*08:01 B2M MHCI -13644 chip0516_634754 6.13 12.06 Chip4 healthy_8 healthy _ 6746 7089 NP225-233 FLU 0.9 23 NP225-233 117 6972 7 InfluenzaA NP ILKGKFQTA transitional T cells between effector and memory populations PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-B*08:01 B2M MHCI -13645 chip0516_560078 10.39 10.57 Chip4 healthy_6 healthy TGCGCCAGCAGCCATGGAACTATGGCTACACCTTC CASSHgg?NYGYTF TRBV5-1*01 TRBJ1-2*01 1.0 29.0 _CASSHgg?NYGYTF 1 5307 EBV-LMP2A EBV 0.9 700 EBV-LMP2A 97 5210 9 EBV LMP2A CLGGLLTMV effector memory T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*02:01 B2M MHCI -13646 chip0516_764869 11.35 12.05 Chip4 healthy_8 healthy _ 6746 5236 BZLF1-190-197 EBV 0.88 2156 BZLF1-190-197 115 5121 9 EBV BZLF1 RAKFKQLL effector memory T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-B*08:01 B2M MHCI -13647 chip0516_147911 4.97 9.97 Chip4 healthy_6 healthy _ 6746 4958 EBV-LMP2-FLY EBV 1.0 355 NEG 120 4838 6 EBV LMP2 FLYALALLL central memory T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*02:01 B2M MHCI -13648 chip0516_278792 -2.74 8.91 Chip4 healthy_8 healthy TGTGTGGTGATCGGGCAAGGCTTTCAGAAACTTGTATTT CVVIGQGFQKLVF TRAV12-1*01 TRAJ8*01 21.0 1086.0 TGTGCAGGGGGAAGCCAAGGAAATCTCATCTTT CAGGSQGNLIF TRAV13-1*01 TRAJ42*01 20.0 1892.0 0.42 TGTGCCAGCAGTTTACCCCTAGCGGGGGTCGCCACAGATACGCAGTATTTT CASSLPLAGVATDTQYF TRBV12-3*01,TRBV12-4*01 TRBJ2-3*01 22.0 1335.0 CVVIGQGFQKLVF_CASSLPLAGVATDTQYF 1 5784 ZNT8-VTD-9 ZNT8 0.76 65 ZNT8-VTD-9 104 5680 3 HomoSapiens ZNT8 VTDAAHLLI Naive T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*01:01 B2M MHCI -13649 chip0516_290310 13.94 12.8 Chip4 healthy_8 healthy _ 6746 3032 EBNA3A-193-201 EBV 0.91 1022 EBNA3A-193-201 106 2926 12 EBV EBNA3A FLRGRAYGL effector T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-B*08:01 B2M MHCI -13650 chip0516_120322 8.74 9.93 Chip4 healthy_9 healthy TGTGCCATCGCAAACGGGCAGGGGCCGGGCGCAGATACGCAGTATTTT CAIANGQGPGADTQYF TRBV10-3*01 TRBJ2-3*01 1.0 19.0 _CAIANGQGPGADTQYF 2 5465 NP44-52 FLU 0.85 474 NP44-52 101 5364 8 InfluenzaA NP CTELKLSDY effector memory T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*01:01 B2M MHCI -13651 chip0516_597181 10.68 7.7 Chip4 healthy_8 healthy TGTGCCGTGAAGACGGACACCAATGCAGGCAAATCAACCTTT CAVKTDTNAGKSTF TRAV12-2*01 TRAJ27*01 25.0 1990.0 CAVKTDTNAGKSTF_ 20 4956 EBNA3A-193-201 EBV 0.57 1022 EBNA3A-193-201 127 4829 10 EBV EBNA3A FLRGRAYGL effector memory T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-B*08:01 B2M MHCI -13652 chip0516_139188 -3.58 10.18 Chip4 healthy_8 healthy TGTACTGTCAGCGATCCTGCTCTGGTGATGCTACAAACAAGCTCATCTTT CTVSDPALg?tDATNKLIF TRAV8-2*01 TRAJ32*01 6.0 299.0 TGTGCCAGCAGTTCGGGACAGGGGTTCAATGAGCAGTTCTTC CASSSGQGFNEQFF TRBV27*01 TRBJ2-1*01 32.0 2454.0 CTVSDPALg?tDATNKLIF_CASSSGQGFNEQFF 1 7056 BZLF1-190-197 EBV 0.73 2156 BZLF1-190-197 107 6949 2 EBV BZLF1 RAKFKQLL Naive T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-B*08:01 B2M MHCI -13653 chip0516_819319 10.1 10.25 Chip4 healthy_6 healthy TGTGCTGTGGCCCTCTCAAGCAAATCAACCTTT CAVALSSKSTF TRAV8-3*01 TRAJ27*01 11.0 893.0 CAVALSSKSTF_ 58 5323 EBV-LMP2A EBV 0.98 700 EBV-LMP2A 127 5196 9 EBV LMP2A CLGGLLTMV effector memory T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*02:01 B2M MHCI -13654 chip0516_164611 11.5 9.23 Chip4 healthy_8 healthy TGCATCCTGCCCCTTGCTGGTGGTACTAGCTATGGAAAGCTGACATTT CILPLAGGTSYGKLTF TRAV26-2*01 TRAJ52*01 42.0 2834.0 TGTGCCAGCAGCTTAGGACAGGCCTACGAGCAGTACTTC CASSLGQAYEQYF TRBV7-8*01 TRBJ2-7*01 23.0 1408.0 CILPLAGGTSYGKLTF_CASSLGQAYEQYF 308 4864 EBNA3A-193-201 EBV 0.87 1022 EBNA3A-193-201 106 4758 10 EBV EBNA3A FLRGRAYGL effector memory T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-B*08:01 B2M MHCI -13655 chip0516_253097 5.07 9.76 Chip4 healthy_6 healthy TGCATCGCCAGACTTCTGGCTCTAGCAACACAGGCAAACTAATCTTT CIARLLAct?SNTGKLIF TRAV26-1*01 TRAJ37*01 29.0 848.0 CIARLLAct?SNTGKLIF_ 1 6367 EBV-LMP2-FLY EBV 1.0 355 NEG 115 6252 6 EBV LMP2 FLYALALLL central memory T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*02:01 B2M MHCI -13656 chip0516_174518 10.94 7.74 Chip4 healthy_6 healthy CGTTCCGTCATCTGAATTCTGGCGCCTTCCCAACTCTCTTT RSVI*Ict?GAFPTLF TRAV8-1*01 TRAJ9*01 2.0 149.0 RSVI*Ict?GAFPTLF_ 1 6131 EBV-LMP2-FLY EBV 1.0 355 EBV-LMP2-FLY 115 6016 6 EBV LMP2 FLYALALLL central memory T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*02:01 B2M MHCI -13657 chip0516_656794 11.13 7.96 Chip4 healthy_8 healthy TGCCTCCTGCCCCTTGCTGGTGGTACTCGCTATGGAAAGCTGACATTT CLLPLAGGTRYGKLTF TRAV26-2*01 TRAJ52*01 8.0 343.0 TGTGCCAGCAGCTTAGGACAGGCCTACGAGCAGTACTTC CASSLGQAYEQYF TRBV7-8*01 TRBJ2-7*01 9.0 521.0 CLLPLAGGTRYGKLTF_CASSLGQAYEQYF 1 6148 EBNA3A-193-201 EBV 0.93 1022 EBNA3A-193-201 127 6021 10 EBV EBNA3A FLRGRAYGL effector memory T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-B*08:01 B2M MHCI -13658 chip0516_173245 11.96 8.49 Chip4 healthy_8 healthy TGCATCCTGCCCCTTGCTGGTGGTACTAGCTATGGAAAGCTGACATTT CILPLAGGTSYGKLTF TRAV26-2*01 TRAJ52*01 28.0 1597.0 TGTGCCAGCAGCTTAGGACAGGCCTACGAGCAGTACTTC CASSLGQAYEQYF TRBV7-8*01 TRBJ2-7*01 29.0 1797.0 CILPLAGGTSYGKLTF_CASSLGQAYEQYF 308 4584 EBNA3A-193-201 EBV 0.9 1022 EBNA3A-193-201 128 4456 10 EBV EBNA3A FLRGRAYGL effector memory T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-B*08:01 B2M MHCI -13659 chip0516_624053 10.27 8.91 Chip4 healthy_6 healthy _ 6746 5149 EBV-LMP2A EBV 0.97 700 EBV-LMP2A 123 5026 10 EBV LMP2A CLGGLLTMV effector memory T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*02:01 B2M MHCI -13660 chip0516_503485 11.82 12.06 Chip4 healthy_8 healthy TGTGCCAGCAGCTTAGTCGAGCCTCAGGGCTATGGCTACACCTTC CASSLVEPQGYGYTF TRBV11-2*01 TRBJ1-2*01 11.0 710.0 _CASSLVEPQGYGYTF 1 3783 BZLF1-190-197 EBV 0.65 2156 BZLF1-190-197 133 3650 11 EBV BZLF1 RAKFKQLL effector T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-B*08:01 B2M MHCI -13661 chip0516_807084 12.13 8.77 Chip4 healthy_8 healthy TGTGCCAGCAGCTTAGGACAGGCCTACGAGCAGTACTTC CASSLGQAYEQYF TRBV7-8*01 TRBJ2-7*01 6.0 183.0 _CASSLGQAYEQYF 175 4315 EBNA3A-193-201 EBV 0.63 1022 EBNA3A-193-201 109 4206 10 EBV EBNA3A FLRGRAYGL effector memory T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-B*08:01 B2M MHCI -13662 chip0516_312410 11.04 8.97 Chip4 healthy_6 healthy _ 6746 7428 EBV-LMP2A EBV 0.94 700 EBV-LMP2A 136 7292 10 EBV LMP2A CLGGLLTMV effector memory T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*02:01 B2M MHCI -13663 chip0516_871487 -3.29 11.41 Chip4 healthy_6 healthy TGTGCCGTGGAAGATGGCCAGAAGCTGCTCTTT CAVEDGQKLLF TRAV12-2*01 TRAJ16*01 3.0 289.0 CAVEDGQKLLF_ 1 5469 MART1-A28L MART1 0.6 84 NEG 92 5377 1 HomoSapiens MART1 ALGIGILTV Naive T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*02:01 B2M MHCI -13664 chip0516_282368 -0.21 8.81 Chip4 healthy_7 healthy TGTGCCACCAGTGAAGCGGGTAGCACAGATACGCAGTATTTT CATSEAGSTDTQYF TRBV24-1*01 TRBJ2-3*01 14.0 836.0 _CATSEAGSTDTQYF 1 5471 IGRP-222-230 IGRP 0.71 10 NEG 134 5337 4 HomoSapiens IGRP YLLLRVLNI Naive T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*02:01 B2M MHCI -13665 chip0516_39631 10.11 10.04 Chip4 healthy_6 healthy _ 6746 5931 EBV-LMP2A EBV 0.89 700 EBV-LMP2A 114 5817 9 EBV LMP2A CLGGLLTMV effector memory T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*02:01 B2M MHCI -13666 chip0516_868449 11.65 7.11 Chip4 healthy_6 healthy TGTGCTGTTCTAATGGATAGCAACTATCAGTTAATCTGG CAVLMDSNYQLIW TRAV21*01 TRAJ33*01 6.0 606.0 TGCGCCAGCAGCGGGGACGGAATGAACACTGAAGCTTTCTTT CASSGDGMNTEAFF TRBV10-2*01 TRBJ1-1*01 36.0 1871.0 CAVLMDSNYQLIW_CASSGDGMNTEAFF 20 8193 EBV-LMP2A EBV 0.96 700 EBV-LMP2A 129 8064 10 EBV LMP2A CLGGLLTMV effector memory T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*02:01 B2M MHCI -13667 chip0516_264972 12.2 8.68 Chip4 healthy_8 healthy TGCATCCTGCCCCTTGCTGGTGGTACTAGCTATGGAAAGCTGACATTT CILPLAGGTSYGKLTF TRAV26-2*01 TRAJ52*01 27.0 1154.0 TGTGCCAGCAGCTTAGGACAGGCCTACGAGCAGTACTTC CASSLGQAYEQYF TRBV7-8*01 TRBJ2-7*01 8.0 694.0 CILPLAGGTSYGKLTF_CASSLGQAYEQYF 308 5071 EBNA3A-193-201 EBV 0.78 1022 EBNA3A-193-201 124 4947 10 EBV EBNA3A FLRGRAYGL effector memory T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-B*08:01 B2M MHCI -13668 chip0516_221083 11.73 7.27 Chip4 healthy_7 healthy TGGTCAGGATACAGCACCCTCACCTTT WSGYSTLTF TRAV27*01 TRAJ11*01 7.0 884.0 TGTGCCAGCAGTTACCAGGGGGGCAATGAGCAGTTCTTC CASSYQGGNEQFF TRBV6-5*01 TRBJ2-1*01 14.0 1057.0 WSGYSTLTF_CASSYQGGNEQFF 1 5470 EBV-LMP2-FLY EBV 1.0 355 NEG 92 5378 10 EBV LMP2 FLYALALLL effector memory T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*02:01 B2M MHCI -13669 chip0516_116776 11.04 8.71 Chip4 healthy_8 healthy TGCATCCTGCCCCTTGCTGGTGGTACTAGCTATGGAAAGCTGACATTT CILPLAGGTSYGKLTF TRAV26-2*01 TRAJ52*01 1.0 51.0 TGTGCCAGCAGCTTAGGACAGGCCTACGAGCAGTACTTC CASSLGQAYEQYF TRBV7-8*01 TRBJ2-7*01 18.0 1221.0 CILPLAGGTSYGKLTF_CASSLGQAYEQYF 308 6504 EBNA3A-193-201 EBV 0.82 1022 EBNA3A-193-201 112 6392 10 EBV EBNA3A FLRGRAYGL effector memory T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-B*08:01 B2M MHCI -13670 chip0516_693684 9.39 12.21 Chip4 healthy_8 healthy TGTGCCGTGATCACGTACTCTGGGGCTGGGAGTTACCAACTCACTTTC CAVITYSGAGSYQLTF TRAV12-2*01 TRAJ28*01 4.0 270.0 CAVITYSGAGSYQLTF_ 1 3680 BZLF1-190-197 EBV 0.81 2156 BZLF1-190-197 125 3555 6 EBV BZLF1 RAKFKQLL central memory T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-B*08:01 B2M MHCI -13671 chip0516_730990 10.59 8.85 Chip4 healthy_8 healthy TGTGCCAGCAGCTTAGGACAGGCCTACGAGCAGTACTTC CASSLGQAYEQYF TRBV7-8*01 TRBJ2-7*01 5.0 409.0 _CASSLGQAYEQYF 175 4629 EBNA3A-193-201 EBV 0.85 1022 EBNA3A-193-201 105 4524 10 EBV EBNA3A FLRGRAYGL effector memory T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-B*08:01 B2M MHCI -13672 chip0516_614620 9.42 12.74 Chip4 healthy_6 healthy TGTGCTACGGAAGGGGATTCAGGATACAGCACCCTCACCTTT CATEGDSGYSTLTF TRAV17*01 TRAJ11*01 2.0 33.0 CATEGDSGYSTLTF_ 12 4434 EBV-LMP2-FLY EBV 0.83 355 EBV-LMP2-FLY 112 4322 6 EBV LMP2 FLYALALLL central memory T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*02:01 B2M MHCI -13673 chip0516_461271 -2.02 7.8 Chip4 healthy_7 healthy TCTGCTGTGCTGTCCCGGTCTCCAGTTCTATTAT SAVLScg??gtLQFYY TRAV14/DV4*01 TRAJ49*01 5.0 534.0 TGTGCCAGCACTGAGCGGCCAAGCCTGTACAATGAGCAGTTCTTC CASTERPSLYNEQFF TRBV6-1*01 TRBJ2-1*01 48.0 2426.0 SAVLScg??gtLQFYY_CASTERPSLYNEQFF 1 6008 NEF-136-145 FLU 0.86 9 NEG 133 5875 3 InfluenzaA NEF PLTFGWCYKL Naive T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*02:01 B2M MHCI -13674 chip0516_463350 5.42 9.35 Chip4 healthy_7 healthy _ 6746 5250 EBV-LMP2-FLY EBV 0.92 355 NEG 110 5140 6 EBV LMP2 FLYALALLL central memory T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*02:01 B2M MHCI -13675 chip0516_146536 11.4 7.7 Chip4 healthy_6 healthy _ 6746 6871 EBV-LMP2A EBV 1.0 700 EBV-LMP2A 132 6739 10 EBV LMP2A CLGGLLTMV effector memory T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*02:01 B2M MHCI -13676 chip0516_507918 11.84 7.5 Chip4 healthy_8 healthy TGCATCCTGCCCCTTGCTGGTGGTACTAGCTATGGAAAGCTGACATTT CILPLAGGTSYGKLTF TRAV26-2*01 TRAJ52*01 33.0 2180.0 TGTGCCAGCAGCTTAGGACAGGCCTACGAGCAGTACTTC CASSLGQAYEQYF TRBV7-8*01 TRBJ2-7*01 17.0 938.0 CILPLAGGTSYGKLTF_CASSLGQAYEQYF 308 4935 EBNA3A-193-201 EBV 0.83 1022 EBNA3A-193-201 106 4829 10 EBV EBNA3A FLRGRAYGL effector memory T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-B*08:01 B2M MHCI -13677 chip0516_194232 11.74 6.87 Chip4 healthy_6 healthy _ 6746 6575 EBV-LMP2-FLY EBV 0.88 355 NEG 120 6455 6 EBV LMP2 FLYALALLL central memory T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*02:01 B2M MHCI -13678 chip0516_440780 14.23 10.21 Chip4 healthy_8 healthy TGCATCCTGCCCCTTGCTGGTGGTACTAGCTATGGAAAGCTGACATTT CILPLAGGTSYGKLTF TRAV26-2*01 TRAJ52*01 10.0 573.0 TGTGCCAGCAGCTTAGGACAGGCCTACGAGCAGTACTTC CASSLGQAYEQYF TRBV7-8*01 TRBJ2-7*01 14.0 775.0 CILPLAGGTSYGKLTF_CASSLGQAYEQYF 308 4995 EBNA3A-193-201 EBV 0.95 1022 EBNA3A-193-201 122 4873 12 EBV EBNA3A FLRGRAYGL effector T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-B*08:01 B2M MHCI -13679 chip0516_172463 -2.43 9.05 Chip4 healthy_9 healthy TGTGCCAGCAGCTCCAACGGTGGGGGAGATCGACACGAAGCTTTCTTT CASSSNGGGDRHEAFF TRBV13*01 TRBJ1-1*01 27.0 1396.0 _CASSSNGGGDRHEAFF 1 5473 GAD2-MMI-8 GAD65 0.6 40 GAD2-MMI-8 101 5372 3 HomoSapiens GAD2 MMIARFKM Naive T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-B*08:01 B2M MHCI -13680 chip0516_842564 11.81 8.02 Chip4 healthy_6 healthy _ 6746 4773 EBV-LMP2A EBV 0.96 700 EBV-LMP2A 112 4661 10 EBV LMP2A CLGGLLTMV effector memory T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*02:01 B2M MHCI -13681 chip0516_412185 5.09 11.9 Chip4 healthy_6 healthy TGTGCCGTGAACGGAGGGGAACGCAGTGGAGGTAGCAACTATAAACTGACATTT CAVNGGERSGGSNYKLTF TRAV12-2*01 TRAJ53*01 45.0 1331.0 TGTGCCAGCAGCGTCGGGGGGATTTCACCCCTCCACTTT CASSVGGISPLHF TRBV9*01 TRBJ1-6*01 27.0 1858.0 CAVNGGERSGGSNYKLTF_CASSVGGISPLHF 2 4773 EBV-LMP1-1 EBV 0.94 237 EBV-LMP1-1 128 4645 6 EBV LMP1 YLLEMLWRL central memory T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*02:01 B2M MHCI -13682 chip0516_457240 6.31 14.04 Chip4 healthy_6 healthy TGTGCAGCAAGAAACACCAATGCAGGCAAATCAACCTTT CAARNTNAGKSTF TRAV13-1*01 TRAJ27*01 21.0 1818.0 CAARNTNAGKSTF_ 2 4024 M1 FLU 0.98 1250 M1 85 3939 7 InfluenzaA M1 GILGFVFTL transitional T cells between effector and memory populations PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*02:01 B2M MHCI -13683 chip0516_762258 9.77 9.96 Chip4 healthy_6 healthy _ 6746 6975 EBV-LMP2A EBV 0.95 700 EBV-LMP2A 113 6862 9 EBV LMP2A CLGGLLTMV effector memory T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*02:01 B2M MHCI -13684 chip0516_591947 -2.41 7.33 Chip4 healthy_9 healthy TGTGCAGAGGCCCAGGGAGGAGGAAACAAACTCACCTTT CAEAQGGGNKLTF TRAV13-2*01 TRAJ10*01 18.0 1707.0 CAEAQGGGNKLTF_ 1 6011 BZLF1-190-197 EBV 0.88 2156 BZLF1-190-197 115 5896 3 EBV BZLF1 RAKFKQLL Naive T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-B*08:01 B2M MHCI -13685 chip0516_322995 -1.11 11.35 Chip4 healthy_8 healthy TGTGCCATCAGTGAGTCAGTGGGAAGGGATGAGCAGTTCTTC CAISESVGRDEQFF TRBV10-3*01 TRBJ2-1*01 20.0 670.0 _CAISESVGRDEQFF 1 4176 NP44-52 FLU 0.97 474 NP44-52 91 4085 3 InfluenzaA NP CTELKLSDY Naive T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*01:01 B2M MHCI -13686 chip0516_269811 6.78 11.16 Chip4 healthy_9 healthy _ 6746 5958 GAD2-MAA-10 GAD65 0.48 6 GAD2-MAA-10 127 5831 7 HomoSapiens GAD2 MAALPRLIAF transitional T cells between effector and memory populations PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-B*08:01 B2M MHCI -13687 chip0516_659273 10.48 8.56 Chip4 healthy_8 healthy _ 6746 5286 EBNA3A-158-166 EBV 0.54 444 NEG 114 5172 10 EBV EBNA3A QAKWRLQTL effector memory T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-B*08:01 B2M MHCI -13688 chip0516_350771 9.0 8.67 Chip4 healthy_8 healthy TGTGCTGTGACCCTTACCCTCTACTCTGGGGCTGGGAGTTACCAACTCACTTTC CAVTLTLYSGAGSYQLTF TRAV21*01 TRAJ28*01 31.0 1492.0 TGTGCCAGCAGTTTAATGGGGACAGGGGGCTTGAGTGAAAAACTGTTTTTT CASSLMGTGGLSEKLFF TRBV28*01 TRBJ1-4*01 3.0 111.0 CAVTLTLYSGAGSYQLTF_CASSLMGTGGLSEKLFF 19 8766 EBNA3A-158-166 EBV 0.61 444 EBNA3A-158-166 120 8646 8 EBV EBNA3A QAKWRLQTL effector memory T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-B*08:01 B2M MHCI -13689 chip0516_536855 5.53 9.22 Chip4 healthy_8 healthy _ 6746 6601 EBNA3A-158-166 EBV 0.49 444 EBNA3A-158-166 109 6492 6 EBV EBNA3A QAKWRLQTL central memory T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-B*08:01 B2M MHCI -13690 chip0516_324349 -1.74 9.98 Chip4 healthy_6 healthy TGTGCAGGGCCCCCCGTCCCGGGTTAATAGGAAACTGACATTT CAGPPVP??gVNRKLTF TRAV25*01 TRAJ56*01 2.0 39.0 TGTGCCAGCAGTTTTGGCGGCTCCAATGAGCAGTTCTTC CASSFGGSNEQFF TRBV12-3*01,TRBV12-4*01 TRBJ2-1*01 11.0 892.0 CAGPPVP??gVNRKLTF_CASSFGGSNEQFF 1 6768 IGRP-211-219 IGRP 0.69 13 NEG 116 6652 3 HomoSapiens IGRP NLFLFLFAV Naive T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*02:01 B2M MHCI -13691 chip0516_567229 11.67 12.97 Chip4 healthy_8 healthy TGCATCCTGCCCCTTGCTGGTGGCACTCGCTATGGTACGCTTACATTT CILPLAGGTRYGTLTF TRAV26-2*01 TRAJ52*01 7.0 349.0 TGTGCCAGCAGCTCCGGACAGGCCTACGAGCAGTACTTC CASSSGQAYEQYF TRBV7-8*01 TRBJ2-7*01 18.0 886.0 CILPLAGGTRYGTLTF_CASSSGQAYEQYF 1 4201 EBNA3A-193-201 EBV 0.91 1022 EBNA3A-193-201 130 4071 11 EBV EBNA3A FLRGRAYGL effector T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-B*08:01 B2M MHCI -13692 chip0516_67157 9.5 8.89 Chip4 healthy_6 healthy _ 6746 6552 EBV-LMP2A EBV 1.0 700 EBV-LMP2A 114 6438 8 EBV LMP2A CLGGLLTMV effector memory T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*02:01 B2M MHCI -13693 chip0516_882415 4.82 11.3 Chip4 healthy_8 healthy TGTGCCAGCTATTCGACTAGCGGGGGCCAAGAGACCCAGTACTTC CASYSTSGGQETQYF TRBV2*01 TRBJ2-5*01 38.0 2504.0 _CASYSTSGGQETQYF 5 4794 NP44-52 FLU 0.5 474 NEG 130 4664 6 InfluenzaA NP CTELKLSDY central memory T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*01:01 B2M MHCI -13694 chip0516_854044 11.54 9.48 Chip4 healthy_8 healthy _ 6746 6341 EBNA3A-193-201 EBV 0.89 1022 EBNA3A-193-201 122 6219 9 EBV EBNA3A FLRGRAYGL effector memory T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-B*08:01 B2M MHCI -13695 chip0516_248161 -1.57 7.9 Chip4 healthy_6 healthy TGTGCCCGCACTCCCTTGGGCCCACATACGCAGTATTTT CARTPLGPHTQYF TRBV25-1*01 TRBJ2-3*01 2.0 119.0 _CARTPLGPHTQYF 1 7543 GAG-77-86 HIV 0.91 15 GAG-77-86 112 7431 3 HIV-1 GAG SLYNTVATLY Naive T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*02:01 B2M MHCI -13696 chip0516_210357 -1.99 10.83 Chip4 healthy_9 healthy TGTGCCAGCAGCTTAGGGACTAGCGGGGGGGCTTATGAGCAGTTCTTC CASSLGTSGGAYEQFF TRBV7-6*01 TRBJ2-1*01 11.0 894.0 _CASSLGTSGGAYEQFF 1 5822 INS-LWM-8 INS 0.46 11 INS-LWM-8 103 5719 3 HomoSapiens INS LWMRLLPL Naive T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-B*08:01 B2M MHCI -13697 chip0516_178512 -1.41 9.68 Chip4 healthy_8 healthy TGTGCCCGGGAGGAGGAGGTGCTGACGGACTCACCTTT CAREEEg?tADGLTF TRAV10*01 TRAJ45*01 1.0 14.0 TGTGCCATCAGTGTAGACTACGAGCAGTACTTC CAISVDYEQYF TRBV10-3*01 TRBJ2-7*01 2.0 59.0 CAREEEg?tADGLTF_CAISVDYEQYF 1 7347 NP140-148 FLU 0.62 102 NEG 119 7228 3 InfluenzaA NP HSNLNDATY Naive T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*01:01 B2M MHCI -13698 chip0516_818232 11.86 7.96 Chip4 healthy_6 healthy TGTGCTGTGGCCCTCTCAAGCAAATCAACCTTT CAVALSSKSTF TRAV8-3*01 TRAJ27*01 10.0 859.0 TGCGCCAGCAGCGGGGACGGAATGAACACTGAAGCTTTCTTT CASSGDGMNTEAFF TRBV10-2*01 TRBJ1-1*01 11.0 916.0 CAVALSSKSTF_CASSGDGMNTEAFF 50 5714 EBV-LMP2A EBV 1.0 700 EBV-LMP2A 120 5594 10 EBV LMP2A CLGGLLTMV effector memory T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*02:01 B2M MHCI -13699 chip0516_507494 -4.46 9.53 Chip4 healthy_7 healthy TGTGCCAGCAGCTTTCTCGACAGGGAGGCCTACGAGCAGTACTTC CASSFLDREAYEQYF TRBV7-9*01 TRBJ2-7*01 38.0 2597.0 _CASSFLDREAYEQYF 1 4660 MART1-ALA MART1 0.64 269 NEG 106 4554 2 HomoSapiens MART1 ALAGIGILTV Naive T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*02:01 B2M MHCI -13700 chip0516_734014 -2.64 8.04 Chip4 healthy_8 healthy TGTGCTGTGGGTGCCGTTACGACAAGCTCATCTTT CAVGAgt?YDKLIF TRAV8-3*01 TRAJ34*01 1.0 52.0 CAVGAgt?YDKLIF_ 1 5885 ZNT8-YAK-9 ZNT8 0.65 59 NEG 93 5792 2 HomoSapiens ZNT8 YAKWKLCSA Naive T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-B*08:01 B2M MHCI -13701 chip0516_211707 -2.23 7.42 Chip4 healthy_8 healthy TGCATCGTCGACTAACGCCTCCAAGCTCAGCTTT CIVD*cg??ccSKLSF TRAV26-1*01 TRAJ20*01 6.0 451.0 TGTGCCAGCAGCGAGTTACCGGGACAGGGGTCCTACGAGCAGTACTTC CASSELPGQGSYEQYF TRBV9*01 TRBJ2-7*01 24.0 1401.0 CIVD*cg??ccSKLSF_CASSELPGQGSYEQYF 1 9741 GFAP-LRL-8 GFAP 0.63 18 GFAP-LRL-8 98 9643 2 HomoSapiens GFAP LRLRLDQL Naive T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-B*08:01 B2M MHCI -13702 chip0516_608759 -2.84 7.67 Chip4 healthy_9 healthy _ 6746 5884 ZNT8-VTD-9 ZNT8 0.81 65 ZNT8-VTD-9 97 5787 2 HomoSapiens ZNT8 VTDAAHLLI Naive T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*01:01 B2M MHCI -13703 chip0516_48066 10.16 9.79 Chip4 healthy_6 healthy _ 6746 5021 EBV-LMP2A EBV 0.89 700 EBV-LMP2A 117 4904 9 EBV LMP2A CLGGLLTMV effector memory T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*02:01 B2M MHCI -13704 chip0516_566667 10.44 7.16 Chip4 healthy_8 healthy TGTGCCAGCAGCTTAGGACAGGCCTACGAGCAGTACTTC CASSLGQAYEQYF TRBV7-8*01 TRBJ2-7*01 28.0 2177.0 _CASSLGQAYEQYF 175 6491 EBNA3A-193-201 EBV 0.92 1022 EBNA3A-193-201 135 6356 10 EBV EBNA3A FLRGRAYGL effector memory T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-B*08:01 B2M MHCI -13705 chip0516_328182 10.61 10.35 Chip4 healthy_6 healthy TGTGCTGTGGCCCTCTCAAGCAAATCAACCTTT CAVALSSKSTF TRAV8-3*01 TRAJ27*01 2.0 172.0 CAVALSSKSTF_ 58 5917 EBV-LMP2A EBV 0.8 700 EBV-LMP2A 121 5796 9 EBV LMP2A CLGGLLTMV effector memory T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*02:01 B2M MHCI -13706 chip0516_288197 -4.54 10.12 Chip4 healthy_9 healthy _ 6746 4267 BZLF1-190-197 EBV 0.43 2156 NEG 99 4168 2 EBV BZLF1 RAKFKQLL Naive T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-B*08:01 B2M MHCI -13707 chip0516_784934 5.7 12.04 Chip4 healthy_8 healthy TGTGCCAGCTATTCGACTAGCGGGGGCCAAGAGACCCAGTACTTC CASYSTSGGQETQYF TRBV2*01 TRBJ2-5*01 20.0 1139.0 _CASYSTSGGQETQYF 5 6503 NP44-52 FLU 0.52 474 NEG 118 6385 7 InfluenzaA NP CTELKLSDY transitional T cells between effector and memory populations PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*01:01 B2M MHCI -13708 chip0516_569639 11.12 9.77 Chip4 healthy_6 healthy TGCGCCAGCAGCGGGGACGGAATGAACACTGAAGCTTTCTTT CASSGDGMNTEAFF TRBV10-2*01 TRBJ1-1*01 7.0 251.0 _CASSGDGMNTEAFF 131 6010 EBV-LMP2A EBV 0.92 700 EBV-LMP2A 106 5904 9 EBV LMP2A CLGGLLTMV effector memory T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*02:01 B2M MHCI -13709 chip0516_286298 10.77 9.52 Chip4 healthy_6 healthy TGTGCTGTTCTAATGGATAGCAACTATCAGTTAATCTGG CAVLMDSNYQLIW TRAV21*01 TRAJ33*01 24.0 1698.0 TGCGCCAGCAGCGGGGACGGAATGAACACTGAAGCTTTCTTT CASSGDGMNTEAFF TRBV10-2*01 TRBJ1-1*01 4.0 258.0 CAVLMDSNYQLIW_CASSGDGMNTEAFF 20 6237 EBV-LMP2A EBV 0.96 700 EBV-LMP2A 119 6118 9 EBV LMP2A CLGGLLTMV effector memory T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*02:01 B2M MHCI -13710 chip0516_87812 5.3 10.12 Chip4 healthy_6 healthy TGTGCCAGCAGTCAACAAGGGGGTAACTATGGCTACACCTTC CASSQQGGNYGYTF TRBV6-1*01 TRBJ1-2*01 13.0 570.0 _CASSQQGGNYGYTF 5 6640 EBV-LMP2-FLY EBV 0.94 355 EBV-LMP2-FLY 105 6535 6 EBV LMP2 FLYALALLL central memory T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*02:01 B2M MHCI -13711 chip0516_592523 10.33 10.4 Chip4 healthy_6 healthy TGTGCTGTGGCCCTCTCAAGCAAATCAACCTTT CAVALSSKSTF TRAV8-3*01 TRAJ27*01 1.0 42.0 CAVALSSKSTF_ 58 5662 EBV-LMP2A EBV 0.95 700 EBV-LMP2A 122 5540 9 EBV LMP2A CLGGLLTMV effector memory T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*02:01 B2M MHCI -13712 chip0516_281068 10.73 11.97 Chip4 healthy_8 healthy TGCATCCTGCCCCTTGCTGGTGGTACTAGCTATGGAAAGCTGACATTT CILPLAGGTSYGKLTF TRAV26-2*01 TRAJ52*01 1.0 59.0 TGTGCCAGCAGCTTAGGACAGGCCTACGAGCAGTACTTC CASSLGQAYEQYF TRBV7-8*01 TRBJ2-7*01 12.0 848.0 CILPLAGGTSYGKLTF_CASSLGQAYEQYF 308 5217 EBNA3A-193-201 EBV 0.71 1022 EBNA3A-193-201 100 5117 11 EBV EBNA3A FLRGRAYGL effector T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-B*08:01 B2M MHCI -13713 chip0516_597280 9.81 9.72 Chip4 healthy_8 healthy TGTGCCGTGAAAGGGGACACCAATGCAGGCAAATCAACCTTT CAVKGDTNAGKSTF TRAV12-2*01 TRAJ27*01 13.0 579.0 CAVKGDTNAGKSTF_ 7 6852 EBNA3A-193-201 EBV 0.89 1022 EBNA3A-193-201 118 6734 8 EBV EBNA3A FLRGRAYGL effector memory T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-B*08:01 B2M MHCI -13714 chip0516_522863 7.43 13.94 Chip4 healthy_8 healthy TGTGCCTTTTTCCCCGGTAACCAGTTCTATTTT CAFFPGNQFYF TRAV24*01 TRAJ49*01 11.0 1869.0 CAFFPGNQFYF_ 1 3606 NP30-38 FLU 0.64 72 NEG 100 3506 7 InfluenzaA NP RPIIRPATL transitional T cells between effector and memory populations PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-B*08:01 B2M MHCI -13715 chip0516_262967 5.6 9.8 Chip4 healthy_8 healthy TGTGCCAGCAGCTTAGGACAGGCCTACGAGCAGTACTTC CASSLGQAYEQYF TRBV7-8*01 TRBJ2-7*01 15.0 711.0 _CASSLGQAYEQYF 175 5823 EBNA3A-193-201 EBV 0.96 1022 EBNA3A-193-201 129 5694 6 EBV EBNA3A FLRGRAYGL central memory T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-B*08:01 B2M MHCI -13716 chip0516_166284 12.05 7.77 Chip4 healthy_6 healthy TGCGCCAGCAGCGGGGACGGAATGAACACTGAAGCTTTCTTT CASSGDGMNTEAFF TRBV10-2*01 TRBJ1-1*01 18.0 1804.0 _CASSGDGMNTEAFF 131 5004 EBV-LMP2A EBV 0.82 700 EBV-LMP2A 128 4876 10 EBV LMP2A CLGGLLTMV effector memory T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*02:01 B2M MHCI -13717 chip0516_84011 15.22 8.75 Chip4 healthy_9 healthy _ 6746 4021 BZLF1-190-197 EBV 0.84 2156 BZLF1-190-197 135 3886 12 EBV BZLF1 RAKFKQLL effector T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-B*08:01 B2M MHCI -13718 chip0516_198673 12.07 7.13 Chip4 healthy_6 healthy TGTGCTGTGGCCCTCTCAAGCAAATCAACCTTT CAVALSSKSTF TRAV8-3*01 TRAJ27*01 12.0 800.0 TGCGCCAGCAGCGGGGACGGAATGAACACTGAAGCTTTCTTT CASSGDGMNTEAFF TRBV10-2*01 TRBJ1-1*01 7.0 254.0 CAVALSSKSTF_CASSGDGMNTEAFF 50 5689 EBV-LMP2A EBV 0.92 700 EBV-LMP2A 104 5585 10 EBV LMP2A CLGGLLTMV effector memory T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*02:01 B2M MHCI -13719 chip0516_870337 11.94 7.23 Chip4 healthy_6 healthy TGTGCCGTGAGCGACACCGACAAGCTCATCTTT CAVSDTDKLIF TRAV8-1*01 TRAJ34*01 16.0 1916.0 TGTGCCAGTAGGAGACTAGTGGGGAGCGCCGGGGAGCTGTTTTTT CASRRLVGSAGELFF TRBV19*01 TRBJ2-2*01 1.0 10.0 CAVSDTDKLIF_CASRRLVGSAGELFF 1 6524 EBV-BRLF1 EBV 0.95 1264 EBV-BRLF1 133 6391 10 EBV BRLF1 YVLDHLIVV effector memory T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*02:01 B2M MHCI -13720 chip0516_549968 11.8 7.3 Chip4 healthy_8 healthy TGTGCCAGCAGTGACTCGATAGGGTTTAATTCACCCCTCCACTTT CASSDSIGFNSPLHF TRBV6-4*01 TRBJ1-6*01 1.0 10.0 _CASSDSIGFNSPLHF 2 5156 EBNA3A-193-201 EBV 0.61 1022 EBNA3A-193-201 128 5028 10 EBV EBNA3A FLRGRAYGL effector memory T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-B*08:01 B2M MHCI -13721 chip0516_519399 14.45 10.22 Chip4 healthy_6 healthy TGTGCAGAGGACCATGCACTCAACTTC CAEDHALNF TRAV5*01,TRAV23/DV6*01 TRAJ41*01 2.0 6.0 TGTGCCAGCAGCTCGGGACAGGGGGACAATGAGCAGTTCTTC CASSSGQGDNEQFF TRBV11-3*01,TRBV11-2*01 TRBJ2-1*01 25.0 1206.0 CAEDHALNF_CASSSGQGDNEQFF 6 3231 EBV-BLMF1 EBV 1.0 2531 NEG 122 3109 12 EBV BLMF1 GLCTLVAML effector T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*02:01 B2M MHCI -13722 chip0516_326481 -3.04 8.73 Chip4 healthy_6 healthy TGTGCCAGCAGTGATTGGGGTAGCGGGAGCGTCAATGAGCAGTTCTTC CASSDWGSGSVNEQFF TRBV6-1*01 TRBJ2-1*01 7.0 375.0 _CASSDWGSGSVNEQFF 1 5692 PGT-178 PGT 0.41 1480 NEG 89 5603 2 HomoSapiens PGT LLAGIGTVPI Naive T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*02:01 B2M MHCI -13723 chip0516_750770 8.27 10.84 Chip4 healthy_8 healthy TGTGCCAGCAGCACTAAGACCAATGAGCAGTTCTTC CASSTKTNEQFF TRBV2*01 TRBJ2-1*01 18.0 1672.0 _CASSTKTNEQFF 1 5213 PTPRN-LPA-8 PTPRN 1.0 2 PTPRN-LPA-8 112 5101 7 HomoSapiens PTPRN LPARTSPM transitional T cells between effector and memory populations PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-B*08:01 B2M MHCI -13724 chip0516_489246 -2.91 13.85 Chip4 healthy_8 healthy TGTGTGGTGAACCTCCAGGGGGGCAACATGCTCACCTTT CVVNLQGGNMLTF TRAV12-1*01 TRAJ39*01 13.0 768.0 CVVNLQGGNMLTF_ 1 4007 GFAP-HLK-8 GFAP 0.97 28 GFAP-HLK-8 109 3898 1 HomoSapiens GFAP HLKRNIVV Naive T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-B*08:01 B2M MHCI -13725 chip0516_210335 6.49 12.82 Chip4 healthy_8 healthy _ 6746 4723 NP30-38 FLU 0.69 72 NP30-38 115 4608 7 InfluenzaA NP RPIIRPATL transitional T cells between effector and memory populations PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-B*08:01 B2M MHCI -13726 chip0516_123236 -1.0 8.31 Chip4 healthy_7 healthy _ 6746 5303 IGRP-265-273 IGRP 0.94 34 IGRP-265-273 97 5206 4 HomoSapiens IGRP VLFGLGFAI Naive T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*02:01 B2M MHCI -13727 chip0516_778007 7.12 13.46 Chip4 healthy_10 healthy TGTGCCAGCAGCTTGGGACAGGCTTACGAGCAGTACTTC CASSLGQAYEQYF TRBV7-8*01 TRBJ2-7*01 5.0 267.0 _CASSLGQAYEQYF 175 3441 EBNA3A-193-201 EBV 0.86 1022 EBNA3A-193-201 117 3324 7 EBV EBNA3A FLRGRAYGL transitional T cells between effector and memory populations PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-B*08:01 B2M MHCI -13728 chip0516_799531 5.84 10.97 Chip4 healthy_8 healthy TGTGCTGTGGCCTGGTTATACTCTGGGGCTGGGAGTTACCAACTCACTTTC CAVAWLYSGAGSYQLTF TRAV8-3*01 TRAJ28*01 24.0 1040.0 TGTGCCAGCAGTTTTAAGGATCCCTACGAGCAGTACTTC CASSFKDPYEQYF TRBV27*01 TRBJ2-7*01 64.0 4461.0 CAVAWLYSGAGSYQLTF_CASSFKDPYEQYF 1 6347 EBNA3A-158-166 EBV 0.87 444 EBNA3A-158-166 126 6221 6 EBV EBNA3A QAKWRLQTL central memory T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-B*08:01 B2M MHCI -13729 chip0516_671641 11.69 8.03 Chip4 healthy_6 healthy TGTGCTGTGGCCCTCTCAAGCAAATCACCCTTT CAVALSSKSPF TRAV8-3*01 TRAJ27*01 1.0 24.0 CAVALSSKSPF_ 3 5205 EBV-LMP2A EBV 1.0 700 EBV-LMP2A 116 5089 10 EBV LMP2A CLGGLLTMV effector memory T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*02:01 B2M MHCI -13730 chip0516_544004 12.09 8.67 Chip4 healthy_6 healthy TGCGCCAGCAGCGGGGACGGAATGAACACTGAAGCTTTCTTT CASSGDGMNTEAFF TRBV10-2*01 TRBJ1-1*01 10.0 553.0 _CASSGDGMNTEAFF 131 4916 EBV-LMP2A EBV 0.78 700 EBV-LMP2A 126 4790 10 EBV LMP2A CLGGLLTMV effector memory T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*02:01 B2M MHCI -13731 chip0516_444828 11.88 13.09 Chip4 healthy_9 healthy TGTGCTGTGGGTGAGGACAGACTCATGTTT CAVGEDRLMF TRAV8-3*01 TRAJ31*01 8.0 701.0 CAVGEDRLMF_ 3 2217 BZLF1-190-197 EBV 0.97 2156 BZLF1-190-197 114 2103 11 EBV BZLF1 RAKFKQLL effector T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-B*08:01 B2M MHCI -13732 chip0516_22730 4.96 11.8 Chip4 healthy_8 healthy CGCATCCTGCCCCTTGCTAGTGGTACTAGCTATGGAAAGCTGACATTT RILPLASGTSYGKLTF TRAV26-2*01 TRAJ52*01 35.0 1937.0 TGTGCCAGCAGCTTAGGACAGGCCTACGAGCAGTACTTC CASSLGQAYEQYF TRBV7-8*01 TRBJ2-7*01 16.0 1046.0 RILPLASGTSYGKLTF_CASSLGQAYEQYF 1 4739 EBNA3A-193-201 EBV 0.9 1022 EBNA3A-193-201 108 4631 6 EBV EBNA3A FLRGRAYGL central memory T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-B*08:01 B2M MHCI -13733 chip0516_863525 11.66 8.91 Chip4 healthy_8 healthy TGCATCCTGCCCCTTGCTGGTGGTACTAGCTATGGAAAGCTGACATTT CILPLAGGTSYGKLTF TRAV26-2*01 TRAJ52*01 14.0 715.0 TGTGCCAGCAGCTTAGGACAGGCCTACGAGCAGTACTTC CASSLGQAYEQYF TRBV7-8*01 TRBJ2-7*01 10.0 642.0 CILPLAGGTSYGKLTF_CASSLGQAYEQYF 308 4581 EBNA3A-193-201 EBV 0.86 1022 EBNA3A-193-201 122 4459 10 EBV EBNA3A FLRGRAYGL effector memory T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-B*08:01 B2M MHCI -13734 chip0516_788653 -0.66 8.62 Chip4 healthy_9 healthy TGTGCCAGCACTAGCGGGAGCTACGAGCAGTACTTC CASTSGSYEQYF TRBV10-3*01 TRBJ2-7*01 2.0 42.0 _CASTSGSYEQYF 1 5843 GAD2-EAK-10 GAD65 0.5 14 NEG 97 5746 4 HomoSapiens GAD2 EAKQKGFVPF Naive T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-B*08:01 B2M MHCI -13735 chip0516_880064 11.72 7.81 Chip4 healthy_6 healthy TGCGCCAGCAGCGGGGACGGAATGAACACTGAAGCTTTCTTT CASSGDGMNTEAFF TRBV10-2*01 TRBJ1-1*01 37.0 2024.0 _CASSGDGMNTEAFF 131 5796 EBV-LMP2A EBV 1.0 700 EBV-LMP2A 126 5670 10 EBV LMP2A CLGGLLTMV effector memory T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*02:01 B2M MHCI -13736 chip0516_583417 9.55 13.1 Chip4 healthy_6 healthy TGTGCTACGGTCGGGAATTCAGGATACAGCACCCTCACCTTT CATVGNSGYSTLTF TRAV17*01 TRAJ11*01 7.0 139.0 TGTGCCCGCAGGCCGTTGGGGGGGGCAGATGGCTACACCTTC CARRPLGGADGYTF TRBV6-1*01 TRBJ1-2*01 2.0 168.0 CATVGNSGYSTLTF_CARRPLGGADGYTF 1 4073 EBV-LMP2-FLY EBV 0.69 355 NEG 107 3966 6 EBV LMP2 FLYALALLL central memory T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*02:01 B2M MHCI -13737 chip0516_360657 -4.19 9.29 Chip4 healthy_7 healthy TGTGCCAGCAGTTCAACACAGGGACAGCTCGAGCAGTACTTC CASSSTQGQLEQYF TRBV28*01 TRBJ2-7*01 71.0 5138.0 _CASSSTQGQLEQYF 1 6102 GFAP-214-222 GFAP 0.87 6 GFAP-214-222 113 5989 2 HomoSapiens GFAP QLARQQVHV Naive T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*02:01 B2M MHCI -13738 chip0516_257616 10.93 10.01 Chip4 healthy_6 healthy TGCGCCAGCAGCGGGGACGGAATGAACACTGAAGCTTTCTTT CASSGDGMNTEAFF TRBV10-2*01 TRBJ1-1*01 30.0 1925.0 _CASSGDGMNTEAFF 131 5267 EBV-LMP2A EBV 0.59 700 EBV-LMP2A 97 5170 9 EBV LMP2A CLGGLLTMV effector memory T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*02:01 B2M MHCI -13739 chip0516_274032 -3.6 8.83 Chip4 healthy_9 healthy TGCGCTGTGAGAGATACGACAGGAAACACACCTCTTGTCTTT CAVRDTTGNTPLVF TRAV1-1*01 TRAJ29*01 8.0 600.0 CAVRDTTGNTPLVF_ 1 5215 EBNA3A-158-166 EBV 0.83 444 EBNA3A-158-166 126 5089 2 EBV EBNA3A QAKWRLQTL Naive T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-B*08:01 B2M MHCI -13740 chip0516_845063 6.28 10.18 Chip4 healthy_7 healthy TGTGCTCCCGGGGGGTCTGGGGGTTACCAGAAAGTTACCTTT CAPGGSGGYQKVTF TRAV16*01 TRAJ13*01 31.0 2043.0 CAPGGSGGYQKVTF_ 1 6632 EBV-LMP2-FLY EBV 0.77 355 EBV-LMP2-FLY 97 6535 6 EBV LMP2 FLYALALLL central memory T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*02:01 B2M MHCI -13741 chip0516_438430 4.75 10.76 Chip4 healthy_6 healthy _ 6746 4346 EBV-LMP2-FLY EBV 0.81 355 NEG 111 4235 6 EBV LMP2 FLYALALLL central memory T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*02:01 B2M MHCI -13742 chip0516_106446 12.12 7.73 Chip4 healthy_6 healthy TGCGCCAGCAGCGGGGACGGAATGAACACTGAAGCTTCCTTT CASSGDGMNTEASF TRBV10-2*01 TRBJ1-1*01 11.0 938.0 _CASSGDGMNTEASF 1 5028 EBV-LMP2A EBV 0.91 700 EBV-LMP2A 108 4920 10 EBV LMP2A CLGGLLTMV effector memory T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*02:01 B2M MHCI -13743 chip0516_428545 11.78 7.51 Chip4 healthy_8 healthy TGCATCCTGCCCCTTGCTGGTGGCCCTCGCTATGGCACGCTGACATTT CILPLAGGPRYGTLTF TRAV26-2*01 TRAJ52*01 9.0 476.0 TGTGCCAGCAGCTTAGGACAGGCCTACGAGCAGTACTTC CASSLGQAYEQYF TRBV7-8*01 TRBJ2-7*01 3.0 76.0 CILPLAGGPRYGTLTF_CASSLGQAYEQYF 1 5004 EBNA3A-193-201 EBV 0.92 1022 EBNA3A-193-201 110 4894 10 EBV EBNA3A FLRGRAYGL effector memory T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-B*08:01 B2M MHCI -13744 chip0516_280988 10.61 8.34 Chip4 healthy_6 healthy TGCGCCAGCAGCGGGGACGGAATGAACACTGAAGCTTTCTTT CASSGDGMNTEAFF TRBV10-2*01 TRBJ1-1*01 1.0 31.0 _CASSGDGMNTEAFF 131 6908 EBV-LMP2A EBV 0.94 700 EBV-LMP2A 101 6807 10 EBV LMP2A CLGGLLTMV effector memory T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*02:01 B2M MHCI -13745 chip0516_673676 11.95 7.19 Chip4 healthy_6 healthy _ 6746 6880 EBV-LMP2A EBV 0.83 700 EBV-LMP2A 105 6775 10 EBV LMP2A CLGGLLTMV effector memory T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*02:01 B2M MHCI -13746 chip0516_311623 12.81 8.36 Chip4 healthy_8 healthy TGCACCCTGCCCCTTGCTGGTGGTACTAGCTATGGAAAGCTGACATTT CTLPLAGGTSYGKLTF TRAV26-2*01 TRAJ52*01 13.0 482.0 CTLPLAGGTSYGKLTF_ 1 2930 EBNA3A-193-201 EBV 0.8 1022 EBNA3A-193-201 119 2811 10 EBV EBNA3A FLRGRAYGL effector memory T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-B*08:01 B2M MHCI -13747 chip0516_57970 12.23 7.19 Chip4 healthy_8 healthy TGCATCCTGCCCCTTGCTGGTGGTACTAGCTATGGAAAAGCTGACATT CILPLAGGTSYGKADI TRAV26-2*01 TRAJ52*01 38.0 2867.0 CILPLAGGTSYGKADI_ 1 5168 EBNA3A-193-201 EBV 0.77 1022 EBNA3A-193-201 118 5050 10 EBV EBNA3A FLRGRAYGL effector memory T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-B*08:01 B2M MHCI -13748 chip0516_669710 -2.82 12.36 Chip4 tet_neg TGTGCTCTGATGGCCCAGGCAGGAACTGCTCTGATCTTT CALMAQAGTALIF TRAV19*01 TRAJ15*01 17.0 1087.0 TGTGCCAGCAGCTACGGAGAGGGGCCGAATCAGCCCCAGCATTTT CASSYGEGPNQPQHF TRBV28*01 TRBJ1-5*01 1.0 47.0 CALMAQAGTALIF_CASSYGEGPNQPQHF 1 5717 M1-ALA FLU 0.75 10 NEG 122 5595 1 InfluenzaA M1 ALASCMGLIY Naive T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*01:01 B2M MHCI -13749 chip0516_303669 9.75 10.01 Chip4 healthy_6 healthy TGCGCCAGCAGCGGGGACGGAATGAACACTGAAGCTTTCTTT CASSGDGMNTEAFF TRBV10-2*01 TRBJ1-1*01 1.0 32.0 _CASSGDGMNTEAFF 131 6352 EBV-LMP2A EBV 0.85 700 EBV-LMP2A 131 6221 9 EBV LMP2A CLGGLLTMV effector memory T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*02:01 B2M MHCI -13750 chip0516_190344 16.16 10.32 Chip4 healthy_8 healthy TGTGCCGTGAAAGCCCCGTACAGCAGTGCTTCCAAGCTACTCTTT CAVKAPYSSASKLLF TRAV12-2*01 TRAJ3*01 21.0 815.0 CAVKAPYSSASKLLF_ 1 2903 INS-MAL-8 INS 0.45 38 NEG 126 2777 12 HomoSapiens INS MALWMRLL effector T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-B*08:01 B2M MHCI -13751 chip0516_427153 11.42 8.73 Chip4 healthy_6 healthy TGTGCTGTTCTAATGGATAGCAACTATCAGTTAATCTGG CAVLMDSNYQLIW TRAV21*01 TRAJ33*01 8.0 292.0 CAVLMDSNYQLIW_ 20 5433 EBV-LMP2A EBV 0.85 700 EBV-LMP2A 136 5297 10 EBV LMP2A CLGGLLTMV effector memory T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*02:01 B2M MHCI -13752 chip0516_368853 -4.92 9.45 Chip4 healthy_7 healthy TGTGCTCCCTCAGCTTCATACAACTTCAACAAATTTTACTTT CAPSASYNFNKFYF TRAV41*01 TRAJ21*01 18.0 1952.0 TGTGCCAGCAGCTTAGGGTTCCCCGGGGAGCTGTTTTTT CASSLGFPGELFF TRBV7-6*01 TRBJ2-2*01 28.0 1397.0 CAPSASYNFNKFYF_CASSLGFPGELFF 1 4797 CVB3-P3A CVB 0.7 77 NEG 107 4690 2 CoxsackievirusB P3A GIIYIIYKL Naive T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*02:01 B2M MHCI -13753 chip0516_807390 11.41 8.86 Chip4 healthy_8 healthy TGCATCCTGCCCCTTGCTGGTGGTACTAGCTATGGAAAGCTGACATTT CILPLAGGTSYGKLTF TRAV26-2*01 TRAJ52*01 1.0 83.0 TGTGCCAGCAGCTTAGGACAGGCCTACGAGCAGTACTTC CASSLGQAYEQYF TRBV7-8*01 TRBJ2-7*01 35.0 2688.0 CILPLAGGTSYGKLTF_CASSLGQAYEQYF 308 5731 EBNA3A-193-201 EBV 0.77 1022 EBNA3A-193-201 107 5624 10 EBV EBNA3A FLRGRAYGL effector memory T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-B*08:01 B2M MHCI -13754 chip0516_588698 5.35 9.19 Chip4 healthy_8 healthy TGCATCCTGCCCCTTGCTGGTGGTACTCGCTATGGCAAGCTGACCTTT CILPLAGGTRYGKLTF TRAV26-2*01 TRAJ52*01 5.0 340.0 TGTGCCAGCAGCTTAGGACAGGCCTACGAGCAGTACTTC CASSLGQAYEQYF TRBV7-8*01 TRBJ2-7*01 16.0 1124.0 CILPLAGGTRYGKLTF_CASSLGQAYEQYF 5 4897 EBNA3A-193-201 EBV 0.94 1022 EBNA3A-193-201 113 4784 6 EBV EBNA3A FLRGRAYGL central memory T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-B*08:01 B2M MHCI -13755 chip0516_186988 -3.75 8.7 Chip4 healthy_9 healthy TGCGCACTGAGCGCTCTGGCAACACAGGCAAACTACTCTTT CALSALgc?NTGKLLF TRAV12-3*01 TRAJ37*01 7.0 461.0 TGTGCCAGCAGCCTTAGCGGGGGGGGTCTAGAGACCCAGTACTTC CASSLSGGGLETQYF TRBV9*01 TRBJ2-5*01 31.0 2020.0 CALSALgc?NTGKLLF_CASSLSGGGLETQYF 1 6366 ZNT8-AAK-9 ZNT8 0.67 4 ZNT8-AAK-9 94 6272 2 HomoSapiens ZNT8 AAKMYAFTL Naive T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-B*08:01 B2M MHCI -13756 chip0516_98735 -3.98 10.25 Chip4 healthy_9 healthy TGTGCCTATAATGAGAAATTAACCTTT CAYNEKLTF TRAV3*01 TRAJ48*01 3.0 481.0 TGCAGCGTCACGTCCCCGGGACTAGCGGGAGGGCGGCTACGAGCAGTACTTC CSVTSPGLgc??ggEGGYEQYF TRBV29-1*01 TRBJ2-7*01 25.0 1990.0 CAYNEKLTF_CSVTSPGLgc??ggEGGYEQYF 1 3908 GFAP-LLN-8 GFAP 0.45 6 GFAP-LLN-8 105 3803 2 HomoSapiens GFAP LLNVKLAL Naive T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-B*08:01 B2M MHCI -13757 chip0516_734371 10.83 9.8 Chip4 healthy_8 healthy TGCGTCCTGCCCCTTGCTGGTGGTACTAGCTATGGAAAGCTGACATTT CVLPLAGGTSYGKLTF TRAV26-2*01 TRAJ52*01 1.0 23.0 TGTGCCAACAGCTTAGGACAGGCCTACGAGCAGTACTTC CANSLGQAYEQYF TRBV7-8*01 TRBJ2-7*01 8.0 335.0 CVLPLAGGTSYGKLTF_CANSLGQAYEQYF 1 8297 EBNA3A-193-201 EBV 0.81 1022 EBNA3A-193-201 120 8177 9 EBV EBNA3A FLRGRAYGL effector memory T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-B*08:01 B2M MHCI -13758 chip0516_869288 12.59 13.62 Chip4 healthy_6 healthy _ 6746 2135 EBV-BLMF1 EBV 1.0 2531 NEG 107 2028 11 EBV BLMF1 GLCTLVAML effector T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*02:01 B2M MHCI -13759 chip0516_77419 -2.02 7.46 Chip4 healthy_8 healthy TGTGCAGCAAATACTGGAGGCTTCAAAACTATCTTT CAANTGGFKTIF TRAV13-1*01 TRAJ9*01 32.0 2617.0 TGCGCCAGCAGCCAGCAGGGGAACACTGAAGCTTTCTTT CASSQQGNTEAFF TRBV4-1*01 TRBJ1-1*01 3.0 68.0 CAANTGGFKTIF_CASSQQGNTEAFF 1 8315 G6PC2-NLI-8 IGRP 0.4 32 NEG 109 8206 3 HomoSapiens G6PC2 NLIFKWIL Naive T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-B*08:01 B2M MHCI -13760 chip0516_548285 4.81 10.18 Chip4 healthy_6 healthy TGTGCCAGCAGCCCGGTTTTTAGGGGGGAGACTGGGGCCAACGTCCTGACTTTC CASSPVFRGETGANVLTF TRBV11-1*01 TRBJ2-6*01 18.0 885.0 _CASSPVFRGETGANVLTF 1 6115 PGT-178 PGT 0.96 1480 PGT-178 98 6017 6 HomoSapiens PGT LLAGIGTVPI central memory T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*02:01 B2M MHCI -13761 chip0516_285333 6.32 11.63 Chip4 healthy_8 healthy TGTGCTCTAAGTGGCCGGGGACATGCGCTTT CALSG??cGDMRF TRAV16*01 TRAJ43*01 5.0 584.0 TGTGCCAGTCAGGGTTTTGGTAACACTGAAGCTTTCTTT CASQGFGNTEAFF TRBV9*01 TRBJ1-1*01 15.0 850.0 CALSG??cGDMRF_CASQGFGNTEAFF 1 8046 NP30-38 FLU 0.74 72 NP30-38 116 7930 7 InfluenzaA NP RPIIRPATL transitional T cells between effector and memory populations PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-B*08:01 B2M MHCI -13762 chip0516_681573 8.77 13.63 Chip4 healthy_8 healthy TGTGCCAGCAGCACGACGCTCGGGGACGGCGACTCCTACGAGCAGTACTTC CASSTTLGDGDSYEQYF TRBV13*01 TRBJ2-7*01 1.0 31.0 _CASSTTLGDGDSYEQYF 1 2935 GAD2-MMI-8 GAD65 0.82 40 GAD2-MMI-8 95 2840 11 HomoSapiens GAD2 MMIARFKM effector T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-B*08:01 B2M MHCI -13763 chip0516_475238 10.21 9.82 Chip4 healthy_8 healthy TGTGCTGTGACCCTTACCCTCTACTCTGGGGCTGGGAGTTACCAACTCACTTTC CAVTLTLYSGAGSYQLTF TRAV21*01 TRAJ28*01 27.0 1444.0 TGTGCCAGCAGTTTAATGGGGACAGGGGGCTTGAGTGAAAAACTGTTTTTT CASSLMGTGGLSEKLFF TRBV28*01 TRBJ1-4*01 2.0 120.0 CAVTLTLYSGAGSYQLTF_CASSLMGTGGLSEKLFF 19 6155 EBNA3A-158-166 EBV 0.69 444 EBNA3A-158-166 114 6041 9 EBV EBNA3A QAKWRLQTL effector memory T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-B*08:01 B2M MHCI -13764 chip0516_143957 11.16 9.19 Chip4 healthy_9 healthy _ 6746 5305 BZLF1-190-197 EBV 0.86 2156 BZLF1-190-197 121 5184 10 EBV BZLF1 RAKFKQLL effector memory T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-B*08:01 B2M MHCI -13765 chip0516_483378 -3.56 10.03 Chip4 healthy_8 healthy TGTGCTACGGACGGAGGAAGTAGCAACTATAAACTGACATTT CATDGGSSNYKLTF TRAV17*01 TRAJ53*01 92.0 3910.0 CATDGGSSNYKLTF_ 1 6432 ZNT8-YAK-9 ZNT8 0.56 59 ZNT8-YAK-9 94 6338 2 HomoSapiens ZNT8 YAKWKLCSA Naive T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-B*08:01 B2M MHCI -13766 chip0516_878358 11.2 9.28 Chip4 healthy_8 healthy TGCATCCTGCCCCTTGCTGGTGGTACTAGCTATGGAAAGCTGACATTT CILPLAGGTSYGKLTF TRAV26-2*01 TRAJ52*01 41.0 2773.0 TGTGCCAGCAGCTTAGGACAGGCCTACGAGCAGTACTTC CASSLGQAYEQYF TRBV7-8*01 TRBJ2-7*01 10.0 1055.0 CILPLAGGTSYGKLTF_CASSLGQAYEQYF 308 5200 EBNA3A-193-201 EBV 0.88 1022 EBNA3A-193-201 112 5088 10 EBV EBNA3A FLRGRAYGL effector memory T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-B*08:01 B2M MHCI -13767 chip0516_875066 12.59 8.45 Chip4 healthy_8 healthy TGTGCCAGCAGCCTAGGACAGGCCTACGAGCAGTACTTC CASSLGQAYEQYF TRBV7-8*01 TRBJ2-7*01 9.0 745.0 _CASSLGQAYEQYF 175 3423 EBNA3A-193-201 EBV 0.72 1022 EBNA3A-193-201 103 3320 10 EBV EBNA3A FLRGRAYGL effector memory T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-B*08:01 B2M MHCI -13768 chip0516_751537 11.57 11.93 Chip4 healthy_9 healthy TGTGCTGTCAGCGTCACCTAGATGCTCAACTTT CAVSVT*MLNF TRAV29/DV5*01 TRAJ11*01 1.0 14.0 CAVSVT*MLNF_ 1 2769 BZLF1-190-197 EBV 0.88 2156 BZLF1-190-197 102 2667 10 EBV BZLF1 RAKFKQLL effector memory T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-B*08:01 B2M MHCI -13769 chip0516_662277 12.34 7.44 Chip4 healthy_8 healthy _ 6746 4664 EBNA3A-193-201 EBV 0.87 1022 EBNA3A-193-201 116 4548 10 EBV EBNA3A FLRGRAYGL effector memory T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-B*08:01 B2M MHCI -13770 chip0516_837522 10.84 9.11 Chip4 healthy_9 healthy TGTGCTGTGGGTGAGGACAGACTCATGTTT CAVGEDRLMF TRAV8-3*01 TRAJ31*01 7.0 885.0 CAVGEDRLMF_ 3 5601 BZLF1-190-197 EBV 0.93 2156 BZLF1-190-197 123 5478 10 EBV BZLF1 RAKFKQLL effector memory T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-B*08:01 B2M MHCI -13771 chip0516_761343 -4.03 12.72 Chip4 healthy_9 healthy _ 6746 3830 ZNT8-YAK-9 ZNT8 0.59 59 ZNT8-YAK-9 96 3734 1 HomoSapiens ZNT8 YAKWKLCSA Naive T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-B*08:01 B2M MHCI -13772 chip0516_659770 -3.52 13.01 Chip4 healthy_8 healthy _ 6746 4902 NP225-233 FLU 0.95 23 NP225-233 108 4794 1 InfluenzaA NP ILKGKFQTA Naive T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-B*08:01 B2M MHCI -13773 chip0516_475671 -0.13 8.78 Chip4 healthy_7 healthy TGTGCCAGCACGACAGGGCCGGAGACCCAGTACTTC CASTTGPETQYF TRBV2*01 TRBJ2-5*01 61.0 3961.0 _CASTTGPETQYF 1 4784 MART1-ALA MART1 0.6 269 NEG 95 4689 4 HomoSapiens MART1 ALAGIGILTV Naive T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*02:01 B2M MHCI -13774 chip0516_302334 -3.63 9.58 Chip4 healthy_9 healthy _ 6746 5527 LMP2A-CPL EBV 0.82 44 LMP2A-CPL 105 5422 2 EBV LMP2A CPLSKILL Naive T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-B*08:01 B2M MHCI -13775 chip0516_871524 -1.16 11.02 Chip4 healthy_7 healthy TGTGCCGTGCACGGTGGTAGCAACTATAAACTGACATTT CAVHGGSNYKLTF TRAV12-2*01 TRAJ53*01 12.0 378.0 TGTGCCAGCAGTCTAACCGGGACAGGGAACGAGCAGTACTTC CASSLTGTGNEQYF TRBV6-2*01,TRBV6-3*01 TRBJ2-7*01 17.0 842.0 CAVHGGSNYKLTF_CASSLTGTGNEQYF 1 5164 PGT-178 PGT 0.97 1480 PGT-178 108 5056 3 HomoSapiens PGT LLAGIGTVPI Naive T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*02:01 B2M MHCI -13776 chip0516_351352 11.16 11.16 Chip4 healthy_6 healthy _ 6746 4234 EBV-LMP2A EBV 0.94 700 EBV-LMP2A 89 4145 9 EBV LMP2A CLGGLLTMV effector memory T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*02:01 B2M MHCI -13777 chip0516_61109 11.59 7.33 Chip4 healthy_6 healthy TGCGCCAGCAGCGGGGACGGAATGAACACTGAAGCTTTCTTT CASSGDGMNTEAFF TRBV10-2*01 TRBJ1-1*01 17.0 896.0 _CASSGDGMNTEAFF 131 5334 EBV-LMP2A EBV 0.97 700 EBV-LMP2A 107 5227 10 EBV LMP2A CLGGLLTMV effector memory T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*02:01 B2M MHCI -13778 chip0516_701086 12.13 12.37 Chip4 healthy_6 healthy TGCAGTGCTAGAGATAGGACAGGGAATGGCTACACCTTC CSARDRTGNGYTF TRBV20-1*01 TRBJ1-2*01 2.0 23.0 _CSARDRTGNGYTF 7 2579 EBV-BLMF1 EBV 0.93 2531 NEG 111 2468 11 EBV BLMF1 GLCTLVAML effector T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*02:01 B2M MHCI -13779 chip0516_11785 6.22 10.22 Chip4 healthy_8 healthy TGCATCCTGCCCCTTGCTGGTGGTACTAGCTATGGAAAGCTGACATTT CILPLAGGTSYGKLTF TRAV26-2*01 TRAJ52*01 38.0 2010.0 TGTGCCAGCAGCTTAGGACAGGCCTACGAGCAGTACTTC CASSLGQAYEQYF TRBV7-8*01 TRBJ2-7*01 11.0 1005.0 CILPLAGGTSYGKLTF_CASSLGQAYEQYF 308 6227 EBNA3A-193-201 EBV 0.63 1022 EBNA3A-193-201 103 6124 6 EBV EBNA3A FLRGRAYGL central memory T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-B*08:01 B2M MHCI -13780 chip0516_870630 12.66 7.25 Chip4 healthy_8 healthy TGCATCCTGCCCCTTGCTGGTGGTACTAGCTATGGAAAGCTGACATTT CILPLAGGTSYGKLTF TRAV26-2*01 TRAJ52*01 44.0 2319.0 TGTGCCAGCAGCTTAGGACAGGCCTACGAGCAGTACTTC CASSLGQAYEQYF TRBV7-8*01 TRBJ2-7*01 15.0 991.0 CILPLAGGTSYGKLTF_CASSLGQAYEQYF 308 4929 EBNA3A-193-201 EBV 0.75 1022 EBNA3A-193-201 102 4827 10 EBV EBNA3A FLRGRAYGL effector memory T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-B*08:01 B2M MHCI -13781 chip0516_120359 5.46 8.6 Chip4 healthy_6 healthy TGTGCTCTAGCCAGCGTGGTAGCTACTCTACGCTGGCCTTT CALASVgt?SYSTLAF TRAV6*01 TRAJ53*01 2.0 44.0 TGTGCCAGCAGTCCGTTGGGGGGGGCAGATGGCTACACCTTC CASSPLGGADGYTF TRBV6-1*01 TRBJ1-2*01 8.0 692.0 CALASVgt?SYSTLAF_CASSPLGGADGYTF 1 7878 EBV-LMP2-FLY EBV 1.0 355 NEG 123 7755 6 EBV LMP2 FLYALALLL central memory T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*02:01 B2M MHCI -13782 chip0516_675485 7.8 10.86 Chip4 healthy_6 healthy TGTGCAATGAGCGCGGCTGGAGCCAATAGTAAGCTGACATTT CAMSAAGANSKLTF TRAV12-3*01 TRAJ56*01 61.0 3007.0 CAMSAAGANSKLTF_ 2 5955 ZNT8-115-123 ZNT8 1.0 74 ZNT8-115-123 103 5852 7 HomoSapiens ZNT8 LLSLFSLWL transitional T cells between effector and memory populations PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*02:01 B2M MHCI -13783 chip0516_833846 11.74 8.66 Chip4 healthy_6 healthy _ 6746 4224 EBV-LMP2A EBV 0.89 700 EBV-LMP2A 127 4097 10 EBV LMP2A CLGGLLTMV effector memory T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*02:01 B2M MHCI -13784 chip0516_487353 8.82 10.21 Chip4 healthy_6 healthy TGTGCTGTGGCCCTCTCAAGCAAATCAACCTTT CAVALSSKSTF TRAV8-3*01 TRAJ27*01 3.0 184.0 TGCGCCAGCAGCGGGGACGGAATGAACACTGAAGCTTTCTTT CASSGDGMNTEAFF TRBV10-2*01 TRBJ1-1*01 1.0 20.0 CAVALSSKSTF_CASSGDGMNTEAFF 50 5257 EBV-LMP2A EBV 0.84 700 EBV-LMP2A 112 5145 8 EBV LMP2A CLGGLLTMV effector memory T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*02:01 B2M MHCI -13785 chip0516_352160 13.27 7.54 Chip4 healthy_8 healthy TGTGCAGCAACCTTTTATGGAGGAAGCCAAGGAAATCTCATCTTT CAATFYGGSQGNLIF TRAV29/DV5*01,TRAV13-1*01 TRAJ42*01 2.0 79.0 TGTGCCAGCAGCACCCAGACAGCGCCTGATGATTCGCAGTATTTT CASSTQTAPDDSQYF TRBV7-9*01 TRBJ2-3*01 66.0 4041.0 CAATFYGGSQGNLIF_CASSTQTAPDDSQYF 1 3786 BZLF1-190-197 EBV 0.93 2156 BZLF1-190-197 121 3665 10 EBV BZLF1 RAKFKQLL effector memory T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-B*08:01 B2M MHCI -13786 chip0516_451302 5.75 8.97 Chip4 healthy_6 healthy TGCATCGTCACACTTCTGGCTCTAGCAGCCCCGGCAGACTAATCTTT CIVTLLAct?SSPGRLIF TRAV26-1*01 TRAJ37*01 16.0 639.0 CIVTLLAct?SSPGRLIF_ 1 7453 EBV-LMP2-FLY EBV 1.0 355 NEG 109 7344 6 EBV LMP2 FLYALALLL central memory T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*02:01 B2M MHCI -13787 chip0516_49285 -1.64 10.27 Chip4 healthy_7 healthy CGTGCCCTCCCCTGTACAATAACAATGACCTGCGCTTT RALPCTa?tNNDLRF TRAV9-2*01 TRAJ43*01 13.0 858.0 TGTGCCATCAGTGCGACAGACTCCTACGAGCAGTACTTC CAISATDSYEQYF TRBV10-3*01 TRBJ2-7*01 18.0 1366.0 RALPCTa?tNNDLRF_CAISATDSYEQYF 1 4492 IGRP-265-273 IGRP 0.91 34 NEG 92 4400 3 HomoSapiens IGRP VLFGLGFAI Naive T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*02:01 B2M MHCI -13788 chip0516_572985 5.87 11.37 Chip4 healthy_8 healthy TGTGCTGTGACCCTTACCCTCTACTCTGGGGCTGGGAGTTACCAACTCACTTTC CAVTLTLYSGAGSYQLTF TRAV21*01 TRAJ28*01 35.0 1783.0 TGTGCCAGCAGTTTAATGGGGACAGGGGGCTTGAGTGAAAAACTGTTTTTT CASSLMGTGGLSEKLFF TRBV28*01 TRBJ1-4*01 15.0 429.0 CAVTLTLYSGAGSYQLTF_CASSLMGTGGLSEKLFF 19 8127 EBNA3A-158-166 EBV 0.8 444 EBNA3A-158-166 104 8023 6 EBV EBNA3A QAKWRLQTL central memory T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-B*08:01 B2M MHCI -13789 chip0516_660750 -1.79 11.87 Chip4 healthy_10 healthy TGCGCCAGCAGCCCGGGGGACAGGGGGAGGTACGAGCAGTACTTC CASSPGDRGRYEQYF TRBV4-3*01 TRBJ2-7*01 2.0 30.0 _CASSPGDRGRYEQYF 1 3592 NP225-233 FLU 0.52 23 NP225-233 100 3492 1 InfluenzaA NP ILKGKFQTA Naive T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-B*08:01 B2M MHCI -13790 chip0516_418750 -2.86 8.37 Chip4 healthy_9 healthy _ 6746 7056 NP30-38 FLU 0.8 72 NP30-38 115 6941 2 InfluenzaA NP RPIIRPATL Naive T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-B*08:01 B2M MHCI -13791 chip0516_380648 13.09 6.94 Chip4 healthy_8 healthy _ 6746 4703 BZLF1-190-197 EBV 0.71 2156 BZLF1-190-197 116 4587 10 EBV BZLF1 RAKFKQLL effector memory T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-B*08:01 B2M MHCI -13792 chip0516_714515 11.1 9.6 Chip4 healthy_6 healthy TGCGCCAGCAGCGGGGACGGAATGAACACTGAAGCTTTCTTT CASSGDGMNTEAFF TRBV10-2*01 TRBJ1-1*01 16.0 912.0 _CASSGDGMNTEAFF 131 5788 EBV-LMP2A EBV 1.0 700 EBV-LMP2A 107 5681 9 EBV LMP2A CLGGLLTMV effector memory T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*02:01 B2M MHCI -13793 chip0516_557513 -0.54 4.51 Chip4 healthy_9 healthy TGTGTGGTGAATACTGGAGGCTTCAAAACTATCTTT CVVNTGGFKTIF TRAV12-1*01 TRAJ9*01 26.0 1916.0 TGTGCCAGCAGCTTAGACGGCACTCAAGCTTTCTTT CASSLDGTQAFF TRBV7-9*01 TRBJ1-1*01 3.0 219.0 CVVNTGGFKTIF_CASSLDGTQAFF 1 5781 gp160-586-593 HIV 0.76 30 gp160-586-593 101 5680 5 HIV-1 gp160 YLKDQQLL natural killer-like T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-B*08:01 B2M MHCI -13794 chip0516_127769 11.12 11.37 Chip4 healthy_6 healthy _ 6746 4250 EBV-LMP2A EBV 0.81 700 NEG 107 4143 9 EBV LMP2A CLGGLLTMV effector memory T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*02:01 B2M MHCI -13795 chip0516_50119 -3.13 8.98 Chip4 healthy_8 healthy TGTGCAGAGGGAGCCCAGAAGCTGGTATTT CAEGAQKLVF TRAV13-2*01 TRAJ54*01 1.0 41.0 CAEGAQKLVF_ 1 7388 INS-MAL-8 INS 0.61 38 NEG 91 7297 2 HomoSapiens INS MALWMRLL Naive T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-B*08:01 B2M MHCI -13796 chip0516_274058 -1.57 11.26 Chip4 healthy_9 healthy _ 6746 4773 NP44-52 FLU 0.93 474 NP44-52 124 4649 3 InfluenzaA NP CTELKLSDY Naive T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*01:01 B2M MHCI -13797 chip0516_241228 12.15 10.76 Chip4 healthy_6 healthy _ 6746 5664 EBV-BLMF1 EBV 0.94 2531 EBV-BLMF1 110 5554 9 EBV BLMF1 GLCTLVAML effector memory T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*02:01 B2M MHCI -13798 chip0516_739128 11.3 11.12 Chip4 healthy_8 healthy TGTGCCGTGAAAGGGGACACCAATGCAGGCAAATCAACCTTT CAVKGDTNAGKSTF TRAV12-2*01 TRAJ27*01 8.0 174.0 TGTGCCAGCCAGGGCGACTACGAGCAGTACTTC CASQGDYEQYF TRBV2*01 TRBJ2-7*01 1.0 39.0 CAVKGDTNAGKSTF_CASQGDYEQYF 1 4153 EBNA3A-193-201 EBV 0.91 1022 EBNA3A-193-201 121 4032 9 EBV EBNA3A FLRGRAYGL effector memory T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-B*08:01 B2M MHCI -13799 chip0516_611369 6.03 10.36 Chip4 healthy_6 healthy _ 6746 11327 EBV-LMP2A EBV 0.93 700 EBV-LMP2A 100 11227 6 EBV LMP2A CLGGLLTMV central memory T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*02:01 B2M MHCI -13800 chip0516_240334 12.78 10.12 Chip4 healthy_6 healthy _ 6746 3856 PTPRN-830-839 PTPRN 0.43 2 NEG 125 3731 8 HomoSapiens PTPRN SLYHVYEVNL effector memory T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*02:01 B2M MHCI -13801 chip0516_125738 -2.8 9.48 Chip4 healthy_9 healthy TGCAGTGCTAGAGAAATTGTCAGGGAAGGAGAAAAACTGTTTTTT CSAREIVREGEKLFF TRBV20-1*01 TRBJ1-4*01 71.0 3911.0 _CSAREIVREGEKLFF 1 4741 M1-ALA FLU 0.6 10 M1-ALA 108 4633 2 InfluenzaA M1 ALASCMGLIY Naive T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*01:01 B2M MHCI -13802 chip0516_700760 5.93 12.6 Chip4 healthy_8 healthy _ 6746 7031 NP44-52 FLU 0.84 474 NP44-52 122 6909 7 InfluenzaA NP CTELKLSDY transitional T cells between effector and memory populations PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*01:01 B2M MHCI -13803 chip0516_424371 11.3 7.84 Chip4 healthy_6 healthy _ 6746 6741 EBV-LMP2A EBV 0.93 700 EBV-LMP2A 99 6642 10 EBV LMP2A CLGGLLTMV effector memory T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*02:01 B2M MHCI -13804 chip0516_351250 12.67 8.59 Chip4 healthy_7 healthy _ 6746 2717 EBV-LMP2-FLY EBV 0.92 355 NEG 97 2620 10 EBV LMP2 FLYALALLL effector memory T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*02:01 B2M MHCI -13805 chip0516_781133 11.26 8.97 Chip4 healthy_8 healthy TGCATCCTGCCCCTTGCTGGTGGTACTAGCTATGGAAAGCTGACATTT CILPLAGGTSYGKLTF TRAV26-2*01 TRAJ52*01 42.0 3241.0 TGTGCCAGCAGCTCCGGACAGGCCTACGAGCAGTACTTC CASSSGQAYEQYF TRBV7-8*01 TRBJ2-7*01 2.0 149.0 CILPLAGGTSYGKLTF_CASSSGQAYEQYF 40 4148 EBNA3A-193-201 EBV 0.85 1022 EBNA3A-193-201 111 4037 9 EBV EBNA3A FLRGRAYGL effector memory T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-B*08:01 B2M MHCI -13806 chip0516_361056 10.98 7.71 Chip4 healthy_6 healthy TGCAGCGTTGGGACAGGGGGCACTAATGAAAAACTGTTTTTT CSVGTGGTNEKLFF TRBV29-1*01 TRBJ1-4*01 80.0 5696.0 _CSVGTGGTNEKLFF 638 6911 EBV-BLMF1 EBV 1.0 2531 EBV-BLMF1 115 6796 10 EBV BLMF1 GLCTLVAML effector memory T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*02:01 B2M MHCI -13807 chip0516_329483 -3.54 12.55 Chip4 healthy_6 healthy _ 6746 4589 IGRP-152-160-WLI IGRP 0.78 27 NEG 106 4483 1 HomoSapiens IGRP FLWSVFWLI Naive T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*02:01 B2M MHCI -13808 chip0516_468921 11.63 8.24 Chip4 healthy_8 healthy TGCATCCTGCCCCCTGCTGGTGGTACTAGCTATGGAAAGCTGACATTT CILPPAGGTSYGKLTF TRAV26-2*01 TRAJ52*01 14.0 423.0 CILPPAGGTSYGKLTF_ 2 3104 EBNA3A-193-201 EBV 0.74 1022 EBNA3A-193-201 129 2975 10 EBV EBNA3A FLRGRAYGL effector memory T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-B*08:01 B2M MHCI -13809 chip0516_422401 7.71 11.77 Chip4 healthy_8 healthy TGTGTGGCTTCCGCCGACAAGCTCATCTTT CVASADKLIF TRAV12-1*01 TRAJ34*01 3.0 42.0 CVASADKLIF_ 1 5213 NP44-52 FLU 0.9 474 NP44-52 113 5100 7 InfluenzaA NP CTELKLSDY transitional T cells between effector and memory populations PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*01:01 B2M MHCI -13810 chip0516_834277 5.78 9.58 Chip4 healthy_8 healthy _ 6746 5221 ZNT8-PTE-9 ZNT8 0.96 18 ZNT8-PTE-9 110 5111 6 HomoSapiens ZNT8 PTEKGANEY central memory T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*01:01 B2M MHCI -13811 chip0516_263652 5.65 12.96 Chip4 healthy_8 healthy _ 6746 5409 NP44-52 FLU 0.93 474 NP44-52 98 5311 7 InfluenzaA NP CTELKLSDY transitional T cells between effector and memory populations PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*01:01 B2M MHCI -13812 chip0516_292314 -2.39 11.11 Chip4 healthy_9 healthy TGTGCCAGCACCAAGCGGGGGGGGTATGAGCAGTTCTTC CASTKRGGYEQFF TRBV6-2*01,TRBV6-3*01 TRBJ2-1*01 8.0 574.0 _CASTKRGGYEQFF 1 4318 NP225-233 FLU 0.54 23 NEG 119 4199 3 InfluenzaA NP ILKGKFQTA Naive T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-B*08:01 B2M MHCI -13813 chip0516_69278 8.14 11.61 Chip4 healthy_8 healthy TGCAGCGTTGGGGGGTCCGGGACAGGGAAAGGGTACGATGGCTACACCTTC CSVGGSGTGKGYDGYTF TRBV29-1*01 TRBJ1-2*01 46.0 2875.0 _CSVGGSGTGKGYDGYTF 1 5562 BZLF1-190-197 EBV 0.55 2156 NEG 110 5452 7 EBV BZLF1 RAKFKQLL transitional T cells between effector and memory populations PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-B*08:01 B2M MHCI -13814 chip0516_635800 10.52 10.47 Chip4 healthy_6 healthy _ 6746 5703 EBV-LMP2A EBV 0.93 700 EBV-LMP2A 105 5598 9 EBV LMP2A CLGGLLTMV effector memory T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*02:01 B2M MHCI -13815 chip0516_289416 -1.54 10.18 Chip4 healthy_9 healthy _ 6746 4463 GAD2-MMI-8 GAD65 0.81 40 GAD2-MMI-8 100 4363 4 HomoSapiens GAD2 MMIARFKM Naive T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-B*08:01 B2M MHCI -13816 chip0516_270856 -2.79 12.67 Chip4 healthy_7 healthy TGTGTGGTGAGCCTATCTAACTTTGGAAATGAGAAATTAACCTTT CVVSLSNFGNEKLTF TRAV12-1*01 TRAJ48*01 40.0 1381.0 CVVSLSNFGNEKLTF_ 1 4507 PGT-178 PGT 0.46 1480 NEG 118 4389 1 HomoSapiens PGT LLAGIGTVPI Naive T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*02:01 B2M MHCI -13817 chip0516_458997 11.65 7.62 Chip4 healthy_8 healthy TGCATCCTGCCCCTTGCTGGTGGTACTAGCTATGGAAAGCTGACATTT CILPLAGGTSYGKLTF TRAV26-2*01 TRAJ52*01 15.0 797.0 TGTGCCAGCAGCTTAGGACAGGCCTACGAGCAGTACTTC CASSLGQAYEQYF TRBV7-8*01 TRBJ2-7*01 18.0 1627.0 CILPLAGGTSYGKLTF_CASSLGQAYEQYF 308 4897 EBNA3A-193-201 EBV 0.78 1022 EBNA3A-193-201 118 4779 10 EBV EBNA3A FLRGRAYGL effector memory T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-B*08:01 B2M MHCI -13818 chip0516_543524 -3.64 10.59 Chip4 healthy_9 healthy TCTGGTGGTACTAGCTATGGAAAGCTGACATTT SGGTSYGKLTF TRAV13-1*01 TRAJ52*01 7.0 756.0 TGTGCCAGCCGCGTAGATCCTGGCTATGGGTGCACCTTC CASRVDPGYGCTF TRBV9*01 TRBJ1-2*01 4.0 178.0 SGGTSYGKLTF_CASRVDPGYGCTF 1 4801 NP44-52 FLU 0.55 474 NP44-52 111 4690 2 InfluenzaA NP CTELKLSDY Naive T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*01:01 B2M MHCI -13819 chip0516_378988 -1.23 10.51 Chip4 healthy_8 healthy TGTGCCAGCAGCCTACCCTTGTGGGCAGGGCAAATCAGCCCCAGCATTTT CASSLPLWg?cRANQPQHF TRBV5-5*01 TRBJ1-5*01 18.0 902.0 _CASSLPLWg?cRANQPQHF 1 4414 NP44-52 FLU 0.92 474 NP44-52 104 4310 3 InfluenzaA NP CTELKLSDY Naive T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*01:01 B2M MHCI -13820 chip0516_179333 -4.17 10.43 Chip4 healthy_7 healthy TGCGCTGTGGGGGAAAAGAACACAGGCTTTCAGAAACTTGTATTT CAVGEKNTGFQKLVF TRAV1-1*01 TRAJ8*01 35.0 1428.0 TGTGCCAGCAGCGCCTCTAGCGGCCCAAAGACCCAGTACTTC CASSASSGPKTQYF TRBV12-3*01,TRBV12-4*01 TRBJ2-5*01 1.0 16.0 CAVGEKNTGFQKLVF_CASSASSGPKTQYF 1 5234 INSDRIP-1-9 INS 0.57 8 NEG 105 5129 2 HomoSapiens INSDRIP MLYQHLLPL Naive T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*02:01 B2M MHCI -13821 chip0516_501756 14.01 9.75 Chip4 healthy_6 healthy TGTGCAGAGGACCATGCACTCAACTTC CAEDHALNF TRAV23/DV6*01 TRAJ41*01 2.0 87.0 TGTGCCAGCAGCTCGGGACAGGGGGACAATGAGCAGTTCTTC CASSSGQGDNEQFF TRBV11-3*01 TRBJ2-1*01 3.0 88.0 CAEDHALNF_CASSSGQGDNEQFF 6 5091 EBV-BLMF1 EBV 0.95 2531 EBV-BLMF1 130 4961 12 EBV BLMF1 GLCTLVAML effector T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*02:01 B2M MHCI -13822 chip0516_494493 -2.22 8.64 Chip4 healthy_6 healthy TGTGCACTGCCTTTATCTAACTTTGGTCCTGAGAACTTCACCTTT CALPLSNFGPENFTF TRAV12-3*01 TRAJ48*01 2.0 28.0 TGTGCCAGCAGCTTGGGACAGGAGCAAGAGACCCAGTACTTC CASSLGQEQETQYF TRBV7-8*01 TRBJ2-5*01 13.0 612.0 CALPLSNFGPENFTF_CASSLGQEQETQYF 1 6593 PGT-178 PGT 0.68 1480 PGT-178 116 6477 3 HomoSapiens PGT LLAGIGTVPI Naive T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*02:01 B2M MHCI -13823 chip0516_76416 -0.66 7.15 Chip4 healthy_7 healthy TGCAGTGCTAGTGGCGGGGACAGGGGGGCAACTAATGAAAAACTGTTTTTT CSASGGDRGATNEKLFF TRBV20-1*01 TRBJ1-4*01 51.0 1816.0 _CSASGGDRGATNEKLFF 1 6176 PGT-178 PGT 0.76 1480 PGT-178 124 6052 3 HomoSapiens PGT LLAGIGTVPI Naive T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*02:01 B2M MHCI -13824 chip0516_742409 6.1 13.47 Chip4 healthy_8 healthy _ 6746 6063 NP30-38 FLU 0.67 72 NP30-38 113 5950 7 InfluenzaA NP RPIIRPATL transitional T cells between effector and memory populations PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-B*08:01 B2M MHCI -13825 chip0516_294566 11.69 7.08 Chip4 healthy_6 healthy _ 6746 5776 EBV-LMP2-FLY EBV 0.95 355 EBV-LMP2-FLY 101 5675 10 EBV LMP2 FLYALALLL effector memory T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*02:01 B2M MHCI -13826 chip0516_471582 -3.51 9.93 Chip4 healthy_8 healthy TGTGCAATGAGCGACTATGGTCAGAATTTTGTCTTT CAMSDYGQNFVF TRAV12-3*01 TRAJ26*01 2.0 62.0 CAMSDYGQNFVF_ 1 4323 ZNT8-YAY-8 ZNT8 0.62 54 ZNT8-YAY-8 111 4212 2 HomoSapiens ZNT8 YAYAKWKL Naive T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-B*08:01 B2M MHCI -13827 chip0516_639849 10.1 9.82 Chip4 healthy_6 healthy TGTGCTGTGGCCCTCTCAAGCAAATCACCCTTT CAVALSSKSPF TRAV8-3*01 TRAJ27*01 1.0 15.0 CAVALSSKSPF_ 3 6513 EBV-LMP2A EBV 1.0 700 EBV-LMP2A 105 6408 9 EBV LMP2A CLGGLLTMV effector memory T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*02:01 B2M MHCI -13828 chip0516_368272 11.81 7.18 Chip4 healthy_6 healthy _ 6746 9352 EBV-LMP2A EBV 1.0 700 EBV-LMP2A 119 9233 10 EBV LMP2A CLGGLLTMV effector memory T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*02:01 B2M MHCI -13829 chip0516_142317 6.43 13.25 Chip4 healthy_6 healthy TGCATCGTCAGAGTCCGTGACGGACTCACCTTT CIVRVRDGLTF TRAV26-1*01 TRAJ45*01 1.0 44.0 CIVRVRDGLTF_ 1 4248 CVB3-P3A CVB 0.86 77 CVB3-P3A 106 4142 7 CoxsackievirusB P3A GIIYIIYKL transitional T cells between effector and memory populations PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*02:01 B2M MHCI -13830 chip0516_869997 5.89 12.99 Chip4 healthy_7 healthy _ 6746 4295 M1 FLU 0.79 1250 M1 94 4201 7 InfluenzaA M1 GILGFVFTL transitional T cells between effector and memory populations PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*02:01 B2M MHCI -13831 chip0516_592103 13.92 9.73 Chip4 healthy_9 healthy TGTACTGTGAGCGACATGGAATATGGAAACAAGCTGGTCTTT CTVSDMEYGNKLVF TRAV8-6*01 TRAJ47*01 43.0 2464.0 TGTGCCAGCAGCTTAGTAGTCTCCCCGGGGGGGCAGATCTACGAGCAGTACTTC CASSLVVSPGGQIYEQYF TRBV11-3*01 TRBJ2-7*01 3.0 43.0 CTVSDMEYGNKLVF_CASSLVVSPGGQIYEQYF 1 3856 BZLF1-190-197 EBV 0.68 2156 BZLF1-190-197 117 3739 12 EBV BZLF1 RAKFKQLL effector T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-B*08:01 B2M MHCI -13832 chip0516_100833 10.92 8.98 Chip4 healthy_6 healthy TGCGCCAGCAGCGGGGACGGAATGAACACTGAAGCTTTCTTT CASSGDGMNTEAFF TRBV10-2*01 TRBJ1-1*01 4.0 334.0 _CASSGDGMNTEAFF 131 6168 EBV-LMP2A EBV 0.97 700 EBV-LMP2A 106 6062 10 EBV LMP2A CLGGLLTMV effector memory T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*02:01 B2M MHCI -13833 chip0516_817371 -2.93 8.3 Chip4 healthy_8 healthy _ 6746 8124 ZNT8-VTD-9 ZNT8 0.68 65 ZNT8-VTD-9 98 8026 2 HomoSapiens ZNT8 VTDAAHLLI Naive T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*01:01 B2M MHCI -13834 chip0516_63530 -2.83 7.76 Chip4 healthy_8 healthy TGTTATGTCCCGTATAAAAACCTACTAAAAAAAGATGATATTT CYVPYKN??cY*KKMIF TRAV8-3*01 TRAJ50*01 10.0 1478.0 CYVPYKN??cY*KKMIF_ 1 7975 ZNT8-VTD-9 ZNT8 0.81 65 ZNT8-VTD-9 80 7895 2 HomoSapiens ZNT8 VTDAAHLLI Naive T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*01:01 B2M MHCI -13835 chip0516_729924 -3.96 8.2 Chip4 healthy_8 healthy _ 6746 6295 G6PC2-YVM-8 IGRP 0.65 8 NEG 99 6196 2 HomoSapiens G6PC2 YVMVTAAL Naive T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-B*08:01 B2M MHCI -13836 chip0516_565983 11.75 7.98 Chip4 healthy_8 healthy _ 6746 4397 EBNA3A-193-201 EBV 0.94 1022 EBNA3A-193-201 115 4282 10 EBV EBNA3A FLRGRAYGL effector memory T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-B*08:01 B2M MHCI -13837 chip0516_418934 10.21 10.95 Chip4 healthy_8 healthy TGTGCTGTGACCCTTACCCTCTACTCTGGGGCTGGGCGTTACCAACTCACTTTC CAVTLTLYSGAGRYQLTF TRAV21*01 TRAJ28*01 8.0 435.0 TGTGCCAGCAGTTTAATGGGGACAGGGGGCTTGAGTGAAAAACTGTTTTTT CASSLMGTGGLSEKLFF TRBV28*01 TRBJ1-4*01 5.0 82.0 CAVTLTLYSGAGRYQLTF_CASSLMGTGGLSEKLFF 2 6160 EBNA3A-158-166 EBV 0.92 444 EBNA3A-158-166 112 6048 9 EBV EBNA3A QAKWRLQTL effector memory T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-B*08:01 B2M MHCI -13838 chip0516_83095 11.52 7.41 Chip4 healthy_7 healthy _ 6746 5820 EBV-LMP2-FLY EBV 0.93 355 EBV-LMP2-FLY 113 5707 10 EBV LMP2 FLYALALLL effector memory T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*02:01 B2M MHCI -13839 chip0516_72537 0.34 8.68 Chip4 healthy_8 healthy _ 6746 5507 NP44-52 FLU 0.73 474 NP44-52 96 5411 4 InfluenzaA NP CTELKLSDY Naive T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*01:01 B2M MHCI -13840 chip0516_268141 11.67 11.97 Chip4 healthy_6 healthy _ 6746 4193 EBV-BLMF1 EBV 0.87 2531 NEG 108 4085 11 EBV BLMF1 GLCTLVAML effector T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*02:01 B2M MHCI -13841 chip0516_648343 8.07 8.64 Chip4 healthy_8 healthy _ 6746 10218 EBNA3A-193-201 EBV 0.93 1022 EBNA3A-193-201 125 10093 8 EBV EBNA3A FLRGRAYGL effector memory T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-B*08:01 B2M MHCI -13842 chip0516_337306 10.38 8.99 Chip4 healthy_7 healthy TGCAGTGCTAGAGATGAGACAGGGAATGGCTACACCTTC CSARDETGNGYTF TRBV20-1*01 TRBJ1-2*01 25.0 1981.0 _CSARDETGNGYTF 6 5509 EBV-BLMF1 EBV 0.78 2531 EBV-BLMF1 94 5415 10 EBV BLMF1 GLCTLVAML effector memory T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*02:01 B2M MHCI -13843 chip0516_597332 11.32 10.8 Chip4 healthy_6 healthy TGTGCTGTGGCCCTCTCAAGCAAATCAACCTTT CAVALSSKSTF TRAV8-3*01 TRAJ27*01 3.0 566.0 CAVALSSKSTF_ 58 4652 EBV-LMP2A EBV 1.0 700 EBV-LMP2A 113 4539 9 EBV LMP2A CLGGLLTMV effector memory T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*02:01 B2M MHCI -13844 chip0516_232217 11.94 6.82 Chip4 healthy_6 healthy TGCGCCAGCAGCGGGGACGGAATGAACACTGAAGCTTTCTTT CASSGDGMNTEAFF TRBV10-2*01 TRBJ1-1*01 17.0 1585.0 _CASSGDGMNTEAFF 131 6456 EBV-LMP2A EBV 0.86 700 EBV-LMP2A 120 6336 10 EBV LMP2A CLGGLLTMV effector memory T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*02:01 B2M MHCI -13845 chip0516_550788 11.18 10.57 Chip4 healthy_8 healthy TGTGCCGTGAAAGGGGACACCAATGCAGGCAAATCAACCTTT CAVKGDTNAGKSTF TRAV12-2*01 TRAJ27*01 25.0 1693.0 CAVKGDTNAGKSTF_ 7 5022 EBNA3A-193-201 EBV 0.93 1022 EBNA3A-193-201 108 4914 9 EBV EBNA3A FLRGRAYGL effector memory T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-B*08:01 B2M MHCI -13846 chip0516_470172 -0.4 8.8 Chip4 healthy_8 healthy TGTGCTGGGCGGTTTGGGAACACACCTCTTGTCTTT CAGRFGNTPLVF TRAV35*01 TRAJ29*01 1.0 19.0 TGCGCCAGCAGCCAAGGAGCTGGGGGGCCGGGGGATGAGCAGTTCTTC CASSQGAGGPGDEQFF TRBV4-1*01 TRBJ2-1*01 18.0 899.0 CAGRFGNTPLVF_CASSQGAGGPGDEQFF 1 7314 G6PC2-NLI-8 IGRP 0.83 32 G6PC2-NLI-8 94 7220 4 HomoSapiens G6PC2 NLIFKWIL Naive T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-B*08:01 B2M MHCI -13847 chip0516_296142 11.19 11.91 Chip4 healthy_6 healthy _ 6746 3974 EBV-LMP2A EBV 0.88 700 EBV-LMP2A 100 3874 9 EBV LMP2A CLGGLLTMV effector memory T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*02:01 B2M MHCI -13848 chip0516_2595 11.74 8.08 Chip4 healthy_8 healthy TGTGCTGTGACCCTTACCCTCTACTCTGGGGCTGGGAGTTACCAACTCACTTTC CAVTLTLYSGAGSYQLTF TRAV21*01 TRAJ28*01 15.0 761.0 CAVTLTLYSGAGSYQLTF_ 3 5103 EBNA3A-158-166 EBV 0.56 444 EBNA3A-158-166 117 4986 10 EBV EBNA3A QAKWRLQTL effector memory T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-B*08:01 B2M MHCI -13849 chip0516_733144 -1.71 7.06 Chip4 healthy_9 healthy _ 6746 7118 G6PC2-YLK-8 IGRP 0.47 27 NEG 124 6994 3 HomoSapiens G6PC2 YLKTNLFL Naive T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-B*08:01 B2M MHCI -13850 chip0516_483047 7.45 13.87 Chip4 healthy_7 healthy TGTGCCAGTAGTGTCTTGGACGGCCCCAGGGGAAAACTGTTTTTT CASSVLDGPRGKLFF TRBV19*01 TRBJ1-4*01 20.0 798.0 _CASSVLDGPRGKLFF 2 3157 M1 FLU 0.93 1250 M1 111 3046 7 InfluenzaA M1 GILGFVFTL transitional T cells between effector and memory populations PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*02:01 B2M MHCI -13851 chip0516_139770 -1.01 7.8 Chip4 healthy_6 healthy _ 6746 8572 PGT-178 PGT 0.96 1480 PGT-178 119 8453 3 HomoSapiens PGT LLAGIGTVPI Naive T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*02:01 B2M MHCI -13852 chip0516_79216 11.26 8.41 Chip4 healthy_8 healthy TGCATCCTGCCCCTTGCTGGTGGTACTAGCTATGGAAAGCTGACATTT CILPLAGGTSYGKLTF TRAV26-2*01 TRAJ52*01 24.0 1906.0 CILPLAGGTSYGKLTF_ 55 5450 EBNA3A-193-201 EBV 0.6 1022 EBNA3A-193-201 125 5325 10 EBV EBNA3A FLRGRAYGL effector memory T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-B*08:01 B2M MHCI -13853 chip0516_732498 12.25 7.12 Chip4 healthy_6 healthy TGTGCTGTGGCCCTCTCAAGCAAATCAACCTTT CAVALSSKSTF TRAV8-3*01 TRAJ27*01 26.0 2877.0 TGCGCCAGCAGCGGAGACGGAATGAACACTGAAGCTTTCTTT CASSGDGMNTEAFF TRBV10-2*01 TRBJ1-1*01 2.0 63.0 CAVALSSKSTF_CASSGDGMNTEAFF 50 5480 EBV-LMP2A EBV 0.92 700 EBV-LMP2A 117 5363 10 EBV LMP2A CLGGLLTMV effector memory T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*02:01 B2M MHCI -13854 chip0516_655438 -1.85 8.08 Chip4 healthy_8 healthy TGTGCTGTCAAAGAAACCAGTGGCTCTAGGTTGACCTTT CAVKETSGSRLTF TRAV41*01 TRAJ10*01 13.0 839.0 TGTGCCAGCACCTACTCGGGACGGATAGCTAACTATGGCTACACCTTC CASTYSGRIANYGYTF TRBV7-9*01 TRBJ1-2*01 35.0 1700.0 CAVKETSGSRLTF_CASTYSGRIANYGYTF 1 7946 GAD2-RMM-9 GAD65 0.83 9 NEG 106 7840 2 HomoSapiens GAD2 RMMEYGTTM Naive T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-B*08:01 B2M MHCI -13855 chip0516_53168 11.95 9.18 Chip4 healthy_9 healthy TGTGCTGTGGGTGAGGCCAGACTCATGTTT CAVGEARLMF TRAV8-3*01 TRAJ31*01 3.0 416.0 CAVGEARLMF_ 1 4386 BZLF1-190-197 EBV 0.89 2156 BZLF1-190-197 115 4271 10 EBV BZLF1 RAKFKQLL effector memory T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-B*08:01 B2M MHCI -13856 chip0516_216393 10.95 10.89 Chip4 healthy_6 healthy _ 6746 4479 EBV-LMP2A EBV 0.9 700 EBV-LMP2A 103 4376 9 EBV LMP2A CLGGLLTMV effector memory T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*02:01 B2M MHCI -13857 chip0516_789611 0.18 3.94 Chip4 healthy_6 healthy TGTGCTACGGACGGTGGCATGCGCTTT CATDGGMRF TRAV17*01 TRAJ43*01 6.0 780.0 TGTGCCAGCAGACGAGAGGGGGGTCACGGCGGGACCCAGTACTTC CASRREGGHGGTQYF TRBV7-2*01 TRBJ2-5*01 22.0 1130.0 CATDGGMRF_CASRREGGHGGTQYF 1 8316 HCVNS3-1406-1415 HCV 0.5 12 NEG 117 8199 5 HCV NS3 KLVALGINAV natural killer-like T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*02:01 B2M MHCI -13858 chip0516_55828 11.46 7.61 Chip4 healthy_6 healthy TGTGCTGTTCTAATGGATAGCAACTATCAGTTAATCTGG CAVLMDSNYQLIW TRAV21*01 TRAJ33*01 19.0 1468.0 TGCGCCAGCAGCGGGGACGGAATGAACACTGAAGCTTTCTTT CASSGDGMNTEAFF TRBV10-2*01 TRBJ1-1*01 2.0 42.0 CAVLMDSNYQLIW_CASSGDGMNTEAFF 20 6331 EBV-LMP2A EBV 0.88 700 EBV-LMP2A 115 6216 10 EBV LMP2A CLGGLLTMV effector memory T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*02:01 B2M MHCI -13859 chip0516_86371 10.71 10.23 Chip4 healthy_6 healthy TGTGCTGTGGCCCTCTCAAGCAAATCAACCTTT CAVALSSKSTF TRAV8-3*01 TRAJ27*01 5.0 490.0 TGCGCCAGCAGCGGGGACGGAATGAACACTGAAGCTTTCTTT CASSGDGMNTEAFF TRBV10-2*01 TRBJ1-1*01 30.0 1656.0 CAVALSSKSTF_CASSGDGMNTEAFF 50 5118 EBV-LMP2A EBV 0.84 700 EBV-LMP2A 102 5016 9 EBV LMP2A CLGGLLTMV effector memory T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*02:01 B2M MHCI -13860 chip0516_15899 11.67 7.56 Chip4 healthy_8 healthy TGCATCCTGCCCCTCGCTGGTGGTACTAGCTATGGAAAGCTGACATTT CILPLAGGTSYGKLTF TRAV26-2*01 TRAJ52*01 27.0 1197.0 TGTGCCAGCCGCTTAGGCCAGGCCTACGAGCAGTCCTTC CASRLGQAYEQSF TRBV7-8*01 TRBJ2-7*01 3.0 275.0 CILPLAGGTSYGKLTF_CASRLGQAYEQSF 1 5201 EBNA3A-193-201 EBV 0.95 1022 EBNA3A-193-201 114 5087 10 EBV EBNA3A FLRGRAYGL effector memory T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-B*08:01 B2M MHCI -13861 chip0516_13519 10.75 9.82 Chip4 healthy_8 healthy TGTGCCAGCAGCTTAGGACAGGCCTACGAGCAGTACTTC CASSLGQAYEQYF TRBV7-8*01 TRBJ2-7*01 25.0 1346.0 _CASSLGQAYEQYF 175 6098 EBNA3A-193-201 EBV 0.65 1022 EBNA3A-193-201 131 5967 9 EBV EBNA3A FLRGRAYGL effector memory T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-B*08:01 B2M MHCI -13862 chip0516_459817 9.33 11.07 Chip4 healthy_6 healthy TGTGTGGTGAATCAAAGAAGGGCAAACAACCTCTTCTTT CVVNQRRANNLFF TRAV12-1*01 TRAJ36*01 1.0 13.0 TGCAGTGCTTTGGGAGACAGGGGGCTTGGGGGCAATCAGCCCCAGCATTTT CSALGDRGLGGNQPQHF TRBV20-1*01 TRBJ1-5*01 34.0 2089.0 CVVNQRRANNLFF_CSALGDRGLGGNQPQHF 1 5961 EBV-BLMF1 EBV 1.0 2531 EBV-BLMF1 99 5862 9 EBV BLMF1 GLCTLVAML effector memory T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*02:01 B2M MHCI -13863 chip0516_764612 10.79 8.28 Chip4 healthy_6 healthy TGCGCCAGCAGCGGGGACGGAATGAACACTGAAGCTTTCTTT CASSGDGMNTEAFF TRBV10-2*01 TRBJ1-1*01 8.0 566.0 _CASSGDGMNTEAFF 131 5907 EBV-LMP2A EBV 0.97 700 EBV-LMP2A 110 5797 10 EBV LMP2A CLGGLLTMV effector memory T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*02:01 B2M MHCI -13864 chip0516_410675 11.4 8.6 Chip4 healthy_8 healthy TGTGCCAGCAGCTTAGGACAGGCCTACGAGCAGTACTTC CASSLGQAYEQYF TRBV7-8*01 TRBJ2-7*01 11.0 636.0 _CASSLGQAYEQYF 175 5118 EBNA3A-193-201 EBV 0.73 1022 EBNA3A-193-201 98 5020 10 EBV EBNA3A FLRGRAYGL effector memory T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-B*08:01 B2M MHCI -13865 chip0516_730889 6.08 12.27 Chip4 healthy_9 healthy TGTGCCAGCAGCCACCACCGGGACAGGGGAGAAGCCGGGGAGCTGTTTTTT CASSHHRDRGEAGELFF TRBV9*01 TRBJ2-2*01 2.0 12.0 _CASSHHRDRGEAGELFF 1 6054 NP380-388 FLU 0.74 60 NP380-388 104 5950 7 InfluenzaA NP ELRSRYWAI transitional T cells between effector and memory populations PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-B*08:01 B2M MHCI -13866 chip0516_652909 5.77 9.77 Chip4 healthy_8 healthy _ 6746 5195 EBNA3A-193-201 EBV 0.89 1022 EBNA3A-193-201 125 5070 6 EBV EBNA3A FLRGRAYGL central memory T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-B*08:01 B2M MHCI -13867 chip0516_646702 5.72 12.72 Chip4 healthy_7 healthy _ 6746 8465 M1 FLU 0.85 1250 M1 125 8340 7 InfluenzaA M1 GILGFVFTL transitional T cells between effector and memory populations PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*02:01 B2M MHCI -13868 chip0516_310639 14.62 8.24 Chip4 healthy_6 healthy TGTGCTGTGGCCCTCTCAAGCAAATCAACCTTT CAVALSSKSTF TRAV8-3*01 TRAJ27*01 1.0 44.0 TGCGCCAGCAGCGGGGACGGAATGAACACTGAAGCTTTCTTT CASSGDGMNTEAFF TRBV10-2*01 TRBJ1-1*01 40.0 2028.0 CAVALSSKSTF_CASSGDGMNTEAFF 50 5437 EBV-LMP2A EBV 0.83 700 EBV-LMP2A 156 5281 12 EBV LMP2A CLGGLLTMV effector T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*02:01 B2M MHCI -13869 chip0516_522361 12.16 13.5 Chip4 healthy_8 healthy TGTGCCAGCAGTTTAATGGGGACAGGGGGCTTGAGTGAAAAACTGTTTTTT CASSLMGTGGLSEKLFF TRBV28*01 TRBJ1-4*01 48.0 1996.0 _CASSLMGTGGLSEKLFF 18 2402 EBNA3A-158-166 EBV 0.43 444 NEG 99 2303 11 EBV EBNA3A QAKWRLQTL effector T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-B*08:01 B2M MHCI -13870 chip0516_142382 -3.68 10.13 Chip4 healthy_6 healthy TGTGCAATGGCCCCCGCTAACTTTGGAAATGAGAAATTAACCTTT CAMAPANFGNEKLTF TRAV12-3*01 TRAJ48*01 31.0 1364.0 CAMAPANFGNEKLTF_ 1 5125 PGT-178 PGT 0.65 1480 PGT-178 84 5041 2 HomoSapiens PGT LLAGIGTVPI Naive T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*02:01 B2M MHCI -13871 chip0516_585121 9.9 8.41 Chip4 healthy_9 healthy _ 6746 3242 BZLF1-190-197 EBV 0.93 2156 BZLF1-190-197 95 3147 8 EBV BZLF1 RAKFKQLL effector memory T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-B*08:01 B2M MHCI -13872 chip0516_391212 5.6 11.96 Chip4 healthy_6 healthy _ 6746 7201 EBV-LMP2-FLY EBV 0.93 355 EBV-LMP2-FLY 95 7106 7 EBV LMP2 FLYALALLL transitional T cells between effector and memory populations PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*02:01 B2M MHCI -13873 chip0516_193517 10.67 11.39 Chip4 healthy_6 healthy TGTGCTGTTCTAATGGATAGCAACTATCAGTTAATCTGG CAVLMDSNYQLIW TRAV12-3*01 TRAJ33*01 18.0 1144.0 CAVLMDSNYQLIW_ 20 4829 EBV-LMP2A EBV 1.0 700 EBV-LMP2A 90 4739 9 EBV LMP2A CLGGLLTMV effector memory T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*02:01 B2M MHCI -13874 chip0516_745329 7.37 14.18 Chip4 healthy_10 healthy TGTGCTGTGAGAGGAGTCAGTGCAGGCAACATGCTCACCTTT CAVRGVSAGNMLTF TRAV1-2*01 TRAJ39*01 2.0 41.0 CAVRGVSAGNMLTF_ 1 3177 NP380-388 FLU 0.63 60 NP380-388 101 3076 7 InfluenzaA NP ELRSRYWAI transitional T cells between effector and memory populations PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-B*08:01 B2M MHCI -13875 chip0516_589068 11.34 8.69 Chip4 healthy_8 healthy TGCATCCTGCCCCTTGCTGGTGGTACTAGCTATGGAAAGCTGACATTT CILPLAGGTSYGKLTF TRAV26-2*01 TRAJ52*01 1.0 17.0 CILPLAGGTSYGKLTF_ 55 5136 EBNA3A-193-201 EBV 0.71 1022 EBNA3A-193-201 103 5033 10 EBV EBNA3A FLRGRAYGL effector memory T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-B*08:01 B2M MHCI -13876 chip0516_802466 -3.87 11.15 Chip4 healthy_6 healthy TGTGCAATGAGAGAACGCAAACGTTCTAACGACTACAAGCTCAGCTTT CAMRERKRSNDYKLSF TRAV14/DV4*01 TRAJ20*01 1.0 35.0 CAMRERKRSNDYKLSF_ 1 5370 POL-334-342 HIV 0.83 12 NEG 92 5278 1 HIV-1 POL VIYQYMDDL Naive T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*02:01 B2M MHCI -13877 chip0516_789839 15.89 10.91 Chip4 healthy_8 healthy TGCATCCTGCCCCTTGCTGGTGGTACTAGCTATGGAAAGCTGACATTT CILPLAGGTSYGKLTF TRAV26-2*01 TRAJ52*01 32.0 1644.0 TGTGCCAGCAGCTCCGGACAGGCCTACGAGCAGTACTTC CASSSGQAYEQYF TRBV7-8*01 TRBJ2-7*01 28.0 1710.0 CILPLAGGTSYGKLTF_CASSSGQAYEQYF 40 3418 EBNA3A-193-201 EBV 0.97 1022 EBNA3A-193-201 122 3296 12 EBV EBNA3A FLRGRAYGL effector T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-B*08:01 B2M MHCI -13878 chip0516_209285 10.28 10.31 Chip4 healthy_8 healthy TGTGCCGTGAAGACGGACACCAATGCAGGCAAATCAACCTTT CAVKTDTNAGKSTF TRAV12-2*01 TRAJ27*01 21.0 1609.0 CAVKTDTNAGKSTF_ 20 6573 EBNA3A-193-201 EBV 0.89 1022 EBNA3A-193-201 113 6460 9 EBV EBNA3A FLRGRAYGL effector memory T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-B*08:01 B2M MHCI -13879 chip0516_22256 10.93 10.26 Chip4 healthy_6 healthy TGCGCCAGCAGCGGGGACGGAATGAACACTGAAGCTTTCTTT CASSGDGMNTEAFF TRBV10-2*01 TRBJ1-1*01 3.0 141.0 _CASSGDGMNTEAFF 131 6906 EBV-LMP2A EBV 1.0 700 EBV-LMP2A 102 6804 9 EBV LMP2A CLGGLLTMV effector memory T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*02:01 B2M MHCI -13880 chip0516_152263 -0.43 8.05 Chip4 healthy_7 healthy TGCATCGTCACGGCTGGGAGTTACCAACTCACTTTC CIVTAGSYQLTF TRAV26-1*01 TRAJ28*01 12.0 904.0 TGCAGCGTAATGACAGGGGCTTCGGAGACCCAGTACTTC CSVMTGASETQYF TRBV29-1*01 TRBJ2-5*01 183.0 14305.0 CIVTAGSYQLTF_CSVMTGASETQYF 1 7660 ZNT8-186-194 ZNT8 0.56 22 NEG 85 7575 4 HomoSapiens ZNT8 VAANIVLTV Naive T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*02:01 B2M MHCI -13881 chip0516_532771 11.54 8.65 Chip4 healthy_6 healthy TGCGCCAGCAGCGGGGACGGAATGAACACTGAAGCTTTCTTT CASSGDGMNTEAFF TRBV10-2*01 TRBJ1-1*01 10.0 504.0 _CASSGDGMNTEAFF 131 4440 EBV-LMP2A EBV 0.89 700 EBV-LMP2A 113 4327 10 EBV LMP2A CLGGLLTMV effector memory T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*02:01 B2M MHCI -13882 chip0516_237329 8.02 11.06 Chip4 healthy_8 healthy TGTGCTTATAGGAGCGAAGGAAACAAACTGGTCTTT CAYRSEGNKLVF TRAV38-2/DV8*01 TRAJ47*01 1.0 64.0 CAYRSEGNKLVF_ 1 4914 BZLF1-190-197 EBV 0.97 2156 BZLF1-190-197 95 4819 7 EBV BZLF1 RAKFKQLL transitional T cells between effector and memory populations PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-B*08:01 B2M MHCI -13883 chip0516_458878 5.46 9.42 Chip4 healthy_8 healthy TGTGCCAGCAGCTTAGGACAGGCCTACGAGCAGTACTTC CASSLGQAYEQYF TRBV7-8*01 TRBJ2-7*01 4.0 221.0 _CASSLGQAYEQYF 175 4848 EBNA3A-193-201 EBV 0.76 1022 EBNA3A-193-201 101 4747 6 EBV EBNA3A FLRGRAYGL central memory T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-B*08:01 B2M MHCI -13884 chip0516_475894 -2.77 9.17 Chip4 healthy_8 healthy TGTGCTGTGCGCCCTTCCCCTTCAGGAAACACACCTCTTGTCTTT CAVRPSPSGNTPLVF TRAV8-4*01 TRAJ29*01 35.0 2801.0 TGCGCCAGCAGCCAAGTCCTGGCGGGGGGGAATGAGCAGTTCTTC CASSQVLAGGNEQFF TRBV4-1*01 TRBJ2-1*01 13.0 786.0 CAVRPSPSGNTPLVF_CASSQVLAGGNEQFF 1 6774 gp160-586-593 HIV 0.88 30 gp160-586-593 90 6684 2 HIV-1 gp160 YLKDQQLL Naive T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-B*08:01 B2M MHCI -13885 chip0516_67277 5.48 9.32 Chip4 healthy_8 healthy TGTGCTGTGACCCTTACCCTCTACTCTGGGGCTGGGAGTTACCAACTCACTTTC CAVTLTLYSGAGSYQLTF TRAV21*01 TRAJ28*01 30.0 1553.0 TGCGCCAGCAGTTTAATGGGGACAGGGGGCTTGAGTGAAAAACTGTTTTTT CASSLMGTGGLSEKLFF TRBV28*01 TRBJ1-4*01 16.0 615.0 CAVTLTLYSGAGSYQLTF_CASSLMGTGGLSEKLFF 19 7296 EBNA3A-158-166 EBV 0.43 444 EBNA3A-158-166 133 7163 6 EBV EBNA3A QAKWRLQTL central memory T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-B*08:01 B2M MHCI -13886 chip0516_33188 11.33 10.23 Chip4 healthy_6 healthy TGCGCCAGCAGCGGGGACGGAATGAACACTGAAGCTTTCTTT CASSGDGMNTEAFF TRBV10-2*01 TRBJ1-1*01 27.0 1516.0 _CASSGDGMNTEAFF 131 6824 EBV-LMP2A EBV 0.93 700 EBV-LMP2A 113 6711 9 EBV LMP2A CLGGLLTMV effector memory T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*02:01 B2M MHCI -13887 chip0516_612850 7.33 13.42 Chip4 healthy_8 healthy TGCGCCAGCAGCCAAGATGGGGTGCCAGGGGGCAACGAGCAGTACTTC CASSQDGVPGGNEQYF TRBV4-1*01 TRBJ2-7*01 12.0 426.0 _CASSQDGVPGGNEQYF 3 3993 NP44-52 FLU 0.89 474 NP44-52 102 3891 7 InfluenzaA NP CTELKLSDY transitional T cells between effector and memory populations PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*01:01 B2M MHCI -13888 chip0516_529623 -2.67 8.06 Chip4 healthy_8 healthy TGTGCCGTGAAGGCCGGATACAGCACCCTCACCTTT CAVKAGYSTLTF TRAV12-2*01 TRAJ11*01 7.0 485.0 TGTGCCAGCAGCGTAGGGCAGAACACTGAAGCTTTCTTT CASSVGQNTEAFF TRBV9*01 TRBJ1-1*01 1.0 40.0 CAVKAGYSTLTF_CASSVGQNTEAFF 1 7628 GFAP-LLN-8 GFAP 0.68 6 GFAP-LLN-8 116 7512 2 HomoSapiens GFAP LLNVKLAL Naive T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-B*08:01 B2M MHCI -13889 chip0516_76702 -3.23 8.7 Chip4 healthy_8 healthy TGTGCAGCGGCTCATCGGGAAACCAGTGGCTCTAGGTTGACCTTT CAAAHRETSGSRLTF TRAV25*01 TRAJ10*01 1.0 44.0 CAAAHRETSGSRLTF_ 1 8489 ZNT8-YAY-8 ZNT8 0.74 54 NEG 106 8383 2 HomoSapiens ZNT8 YAYAKWKL Naive T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-B*08:01 B2M MHCI -13890 chip0516_481221 13.2 11.3 Chip4 healthy_8 healthy TGCATCCTGCCCCTTGCTGGTGGTACTAGCTACGGAAAGCTGACATTT CILPLAGGTSYGKLTF TRAV26-2*01 TRAJ52*01 2.0 33.0 CILPLAGGTSYGKLTF_ 55 4182 EBNA3A-193-201 EBV 0.81 1022 EBNA3A-193-201 118 4064 9 EBV EBNA3A FLRGRAYGL effector memory T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-B*08:01 B2M MHCI -13891 chip0516_361382 10.86 11.31 Chip4 healthy_8 healthy TGTGCAATGAGGTGCCAGCCTCCTGTTT CAMRtg??ccSLLF TRAV14/DV4*01 TRAJ31*01 14.0 2028.0 CAMRtg??ccSLLF_ 1 5230 EBNA3A-193-201 EBV 0.97 1022 EBNA3A-193-201 108 5122 9 EBV EBNA3A FLRGRAYGL effector memory T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-B*08:01 B2M MHCI -13892 chip0516_735590 -0.27 9.25 Chip4 healthy_9 healthy _ 6746 4719 LMP2A-CPL EBV 0.65 44 LMP2A-CPL 96 4623 4 EBV LMP2A CPLSKILL Naive T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-B*08:01 B2M MHCI -13893 chip0516_565320 11.34 8.46 Chip4 healthy_8 healthy TGCATCCTGCCCCTTGCTGGTGGTACTAGCTATGGAAAGCTGACATTT CILPLAGGTSYGKLTF TRAV26-2*01 TRAJ52*01 1.0 52.0 TGTGCCAGCAGCTTAGGACAGGCCTACGAGCAGTACTTC CASSLGQAYEQYF TRBV7-8*01 TRBJ2-7*01 2.0 53.0 CILPLAGGTSYGKLTF_CASSLGQAYEQYF 308 5773 EBNA3A-193-201 EBV 0.9 1022 EBNA3A-193-201 95 5678 10 EBV EBNA3A FLRGRAYGL effector memory T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-B*08:01 B2M MHCI -13894 chip0516_249850 10.61 9.81 Chip4 healthy_9 healthy _ 6746 4230 BZLF1-190-197 EBV 0.78 2156 BZLF1-190-197 110 4120 9 EBV BZLF1 RAKFKQLL effector memory T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-B*08:01 B2M MHCI -13895 chip0516_732658 11.0 10.24 Chip4 healthy_8 healthy TGTGCCAGCAGTGACTCGGTCGGCTTTAATTCACCCCTCCACTTT CASSDSVGFNSPLHF TRBV6-4*01 TRBJ1-6*01 20.0 1265.0 _CASSDSVGFNSPLHF 1 6973 EBNA3A-193-201 EBV 0.95 1022 EBNA3A-193-201 87 6886 9 EBV EBNA3A FLRGRAYGL effector memory T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-B*08:01 B2M MHCI -13896 chip0516_703873 9.05 10.21 Chip4 healthy_7 healthy TGTGCCTGGAGGAATGGTCCCTCCTACAATGAGCAGTTCTTC CAWRNGPSYNEQFF TRBV30*01 TRBJ2-1*01 1.0 21.0 _CAWRNGPSYNEQFF 1 5727 EBV-BRLF1 EBV 1.0 1264 EBV-BRLF1 105 5622 8 EBV BRLF1 YVLDHLIVV effector memory T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*02:01 B2M MHCI -13897 chip0516_487388 11.16 12.29 Chip4 healthy_8 healthy _ 6746 3623 EBNA3A-193-201 EBV 0.76 1022 EBNA3A-193-201 121 3502 11 EBV EBNA3A FLRGRAYGL effector T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-B*08:01 B2M MHCI -13898 chip0516_358164 10.8 10.1 Chip4 healthy_6 healthy TGCGCCAGCAGCGGGGACGGAATGAACACTGAAGCTTTCTTT CASSGDGMNTEAFF TRBV10-2*01 TRBJ1-1*01 2.0 37.0 _CASSGDGMNTEAFF 131 5926 EBV-LMP2A EBV 0.95 700 EBV-LMP2A 102 5824 9 EBV LMP2A CLGGLLTMV effector memory T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*02:01 B2M MHCI -13899 chip0516_255364 6.94 12.46 Chip4 healthy_8 healthy TGCATCCTGCCCCTTGCTGGTGGTACTAGCTATGGAAAGCTGACATTT CILPLAGGTSYGKLTF TRAV26-2*01 TRAJ52*01 86.0 3753.0 TGTGCCAGCAGCTCCGGACAGGCCTACGAGCAGTACTTC CASSSGQAYEQYF TRBV7-8*01 TRBJ2-7*01 14.0 631.0 CILPLAGGTSYGKLTF_CASSSGQAYEQYF 40 5020 EBNA3A-193-201 EBV 0.91 1022 EBNA3A-193-201 99 4921 7 EBV EBNA3A FLRGRAYGL transitional T cells between effector and memory populations PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-B*08:01 B2M MHCI -13900 chip0516_714455 10.13 11.13 Chip4 healthy_8 healthy TGTGCTGTGACCCTTACCCTCTACTCTGGGGCTGGGAGTTACCAACTCACTTTC CAVTLTLYSGAGSYQLTF TRAV21*01 TRAJ28*01 16.0 1078.0 TGTGCCAGCAGTTTAATGGGGACAGGGGGCTTGAGTGAAAAACTGTTTTTT CASSLMGTGGLSEKLFF TRBV28*01 TRBJ1-4*01 4.0 138.0 CAVTLTLYSGAGSYQLTF_CASSLMGTGGLSEKLFF 19 3956 EBNA3A-158-166 EBV 0.69 444 NEG 95 3861 9 EBV EBNA3A QAKWRLQTL effector memory T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-B*08:01 B2M MHCI -13901 chip0516_297651 6.5 12.29 Chip4 healthy_8 healthy TGTGCCGCACGTTTGGAGGAGGTGCTGACGAACTCACCTTT CAARLEga?GADELTF TRAV13-1*01 TRAJ45*01 28.0 1926.0 CAARLEga?GADELTF_ 1 5216 INS-GSH-9 INS 1.0 19 NEG 118 5098 7 HomoSapiens INS GSHLVEALY transitional T cells between effector and memory populations PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*01:01 B2M MHCI -13902 chip0516_864595 -2.93 13.12 Chip4 healthy_9 healthy TGTGCCAGCAGTGAAGCGGATGCCTACGAGCAGTACTTC CASSEADAYEQYF TRBV2*01 TRBJ2-7*01 26.0 2097.0 _CASSEADAYEQYF 1 3886 EBNA3A-158-166 EBV 0.88 444 EBNA3A-158-166 111 3775 1 EBV EBNA3A QAKWRLQTL Naive T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-B*08:01 B2M MHCI -13903 chip0516_622315 10.0 10.14 Chip4 healthy_6 healthy TGTGCTGTGGCCCTCTCAAGCAAATCAACCTTT CAVALSSKSTF TRAV8-3*01 TRAJ27*01 5.0 584.0 TGTGCCAGCAGCTTAGGACAGGCCTACGAGCAGTACTTC CASSLGQAYEQYF TRBV7-8*01 TRBJ2-7*01 2.0 60.0 CAVALSSKSTF_CASSLGQAYEQYF 3 6067 EBV-LMP2A EBV 0.96 700 EBV-LMP2A 94 5973 9 EBV LMP2A CLGGLLTMV effector memory T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*02:01 B2M MHCI -13904 chip0516_483005 11.63 7.94 Chip4 healthy_8 healthy TGTGCCAGCAGTGACTCGATAGGGTTTAATTCACCCCTCCACTTT CASSDSIGFNSPLHF TRBV6-4*01 TRBJ1-6*01 23.0 1027.0 _CASSDSIGFNSPLHF 2 5756 EBNA3A-193-201 EBV 0.84 1022 EBNA3A-193-201 101 5655 10 EBV EBNA3A FLRGRAYGL effector memory T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-B*08:01 B2M MHCI -13905 chip0516_330382 11.54 9.97 Chip4 healthy_8 healthy TGCATCCTGCCCCTTGCTGGTGGTACTAGCTATGGAAAGCTGACATTT CILPLAGGTSYGKLTF TRAV26-2*01 TRAJ52*01 20.0 1006.0 CILPLAGGTSYGKLTF_ 55 6259 EBNA3A-193-201 EBV 0.95 1022 EBNA3A-193-201 109 6150 9 EBV EBNA3A FLRGRAYGL effector memory T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-B*08:01 B2M MHCI -13906 chip0516_173839 9.71 9.9 Chip4 healthy_6 healthy TGCGCCAGCAGCGGGGACGGAATGAACACTGAAGCTTTCTTT CASSGDGMNTEAFF TRBV10-2*01 TRBJ1-1*01 6.0 422.0 _CASSGDGMNTEAFF 131 6534 EBV-LMP2A EBV 0.9 700 EBV-LMP2A 133 6401 9 EBV LMP2A CLGGLLTMV effector memory T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*02:01 B2M MHCI -13907 chip0516_758868 -2.15 11.35 Chip4 healthy_7 healthy TGTGCTCTGAGTGAGATTTATGGTGGTGCTACAAACAAGCTCATCTTT CALSEIYGGATNKLIF TRAV19*01 TRAJ32*01 60.0 2585.0 TGTGCCAGTATGGGGAGCTCCTATAATTCACCCCTCCACTTT CASMGSSYNSPLHF TRBV19*01 TRBJ1-6*01 22.0 1321.0 CALSEIYGGATNKLIF_CASMGSSYNSPLHF 1 4048 HCVNS4B-1807-1816 HCV 0.5 74 NEG 95 3953 4 HCV NS4B LLFNILGGWV Naive T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*02:01 B2M MHCI -13908 chip0516_539002 14.26 11.94 Chip4 healthy_8 healthy TGCATCCTGCCCCTTGCTGGTGGTACTAGCTATGGAAAGCTGACATTT CILPLAGGTSYGKLTF TRAV26-2*01 TRAJ52*01 8.0 509.0 TGTGCCAGCAGCTCCGGACAGGCCTACGAGCAGTACTTC CASSSGQAYEQYF TRBV7-8*01 TRBJ2-7*01 15.0 949.0 CILPLAGGTSYGKLTF_CASSSGQAYEQYF 40 3492 EBNA3A-193-201 EBV 0.92 1022 EBNA3A-193-201 120 3372 12 EBV EBNA3A FLRGRAYGL effector T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-B*08:01 B2M MHCI -13909 chip0516_305182 13.82 7.68 Chip4 healthy_8 healthy TGTGCTGTGACCCTTACCCTCTACTCTGGGGCTGGGAGTTACCAACTCACTTTC CAVTLTLYSGAGSYQLTF TRAV21*01,TRAV36/DV7*01 TRAJ28*01 21.0 710.0 TGTGCCAGCAGTTTAATGGGGACAGGGGGCTTGAGTGAAAAACTGTTTTTT CASSLMGTGGLSEKLFF TRBV28*01 TRBJ1-4*01 33.0 1890.0 CAVTLTLYSGAGSYQLTF_CASSLMGTGGLSEKLFF 19 4035 EBNA3A-158-166 EBV 0.5 444 EBNA3A-158-166 133 3902 10 EBV EBNA3A QAKWRLQTL effector memory T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-B*08:01 B2M MHCI -13910 chip0516_254601 -2.47 8.92 Chip4 healthy_6 healthy _ 6746 6327 PGT-178 PGT 0.65 1480 PGT-178 88 6239 2 HomoSapiens PGT LLAGIGTVPI Naive T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*02:01 B2M MHCI -13911 chip0516_744543 10.95 11.74 Chip4 healthy_6 healthy TGCGCCAGCAGCGGGGACGGAATGAACACTGAAGCTTTCTTT CASSGDGMNTEAFF TRBV10-1*01 TRBJ1-1*01 3.0 105.0 _CASSGDGMNTEAFF 131 3761 EBV-LMP2A EBV 0.92 700 EBV-LMP2A 102 3659 9 EBV LMP2A CLGGLLTMV effector memory T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*02:01 B2M MHCI -13912 chip0516_730241 -2.41 7.75 Chip4 healthy_7 healthy TGTGCCGTGGAGGGTGGAAATGAGAAATTAACCTTT CAVEGGNEKLTF TRAV39*01 TRAJ48*01 13.0 652.0 TGCAGTGCTAACCAACTTAGCGGGAGGGCCTCCTACGAGCAGTACTTC CSANQLSGRASYEQYF TRBV20-1*01 TRBJ2-7*01 31.0 2035.0 CAVEGGNEKLTF_CSANQLSGRASYEQYF 1 6853 INS-14-23 INS 0.78 9 NEG 110 6743 2 HomoSapiens INS LALWGPDPAA Naive T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*02:01 B2M MHCI -13913 chip0516_233501 9.65 8.92 Chip4 healthy_8 healthy TGTGCCAGCAGCTTAGGACAGGCCTACGAGCAGTACTTC CASSLGQAYEQYF TRBV7-8*01 TRBJ2-7*01 11.0 625.0 _CASSLGQAYEQYF 175 5636 EBNA3A-193-201 EBV 0.72 1022 EBNA3A-193-201 123 5513 8 EBV EBNA3A FLRGRAYGL effector memory T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-B*08:01 B2M MHCI -13914 chip0516_619723 -1.17 10.33 Chip4 healthy_7 healthy _ 6746 6492 PGT-178 PGT 0.44 1480 PGT-178 116 6376 3 HomoSapiens PGT LLAGIGTVPI Naive T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*02:01 B2M MHCI -13915 chip0516_13129 -3.24 13.67 Chip4 healthy_7 healthy TGTGCTACGGACGCGAGAAACCAGGGAGGAAAGCTTATCTTC CATDARNQGGKLIF TRAV17*01 TRAJ23*01 7.0 187.0 CATDARNQGGKLIF_ 1 3499 GAD65-476-484 GAD65 0.86 8 NEG 87 3412 1 HomoSapiens GAD65 ELAEYLYNI Naive T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*02:01 B2M MHCI -13916 chip0516_496345 15.26 12.6 Chip4 healthy_8 healthy TGCATCCTGCCCCTTGCTGGTGGTACTAGCTATGGAAAGCTGACATTT CILPLAGGTSYGKLTF TRAV26-2*01 TRAJ52*01 20.0 1046.0 TGTGCCAGCAGCTTAGGACAGGCCTACGAGCAGTACTTC CASSLGQAYEQYF TRBV7-8*01 TRBJ2-7*01 33.0 1713.0 CILPLAGGTSYGKLTF_CASSLGQAYEQYF 308 2961 EBNA3A-193-201 EBV 0.69 1022 EBNA3A-193-201 111 2850 12 EBV EBNA3A FLRGRAYGL effector T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-B*08:01 B2M MHCI -13917 chip0516_802828 -3.25 8.31 Chip4 healthy_8 healthy _ 6746 8149 NP30-38 FLU 0.62 72 NEG 100 8049 2 InfluenzaA NP RPIIRPATL Naive T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-B*08:01 B2M MHCI -13918 chip0516_23200 6.22 11.54 Chip4 healthy_6 healthy TGTGCCAGCAGCTGGGGGACGGGGGACGAGCAGTACTTC CASSWGTGDEQYF TRBV7-8*01 TRBJ2-7*01 14.0 934.0 _CASSWGTGDEQYF 1 4876 ZNT8-115-123 ZNT8 0.86 74 ZNT8-115-123 109 4767 7 HomoSapiens ZNT8 LLSLFSLWL transitional T cells between effector and memory populations PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*02:01 B2M MHCI -13919 chip0516_689872 11.27 8.46 Chip4 healthy_7 healthy TGCGCCAGCAGTGACGACGGCATGAACACTGAAGCTTTCTTT CASSDDGMNTEAFF TRBV10-2*01 TRBJ1-1*01 24.0 1117.0 _CASSDDGMNTEAFF 8 6054 EBV-LMP2A EBV 0.93 700 EBV-LMP2A 100 5954 10 EBV LMP2A CLGGLLTMV effector memory T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*02:01 B2M MHCI -13920 chip0516_715446 10.07 9.71 Chip4 healthy_6 healthy _ 6746 8655 EBV-LMP2A EBV 0.96 700 EBV-LMP2A 90 8565 9 EBV LMP2A CLGGLLTMV effector memory T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*02:01 B2M MHCI -13921 chip0516_236287 11.25 10.0 Chip4 healthy_8 healthy TGCATCCTGCCCCTTGCTGGTGGTACTAGCTATGGAAAGCTGACATTT CILPLAGGTSYGKLTF TRAV26-2*01 TRAJ52*01 18.0 988.0 CILPLAGGTSYGKLTF_ 55 5363 EBNA3A-193-201 EBV 0.93 1022 EBNA3A-193-201 130 5233 9 EBV EBNA3A FLRGRAYGL effector memory T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-B*08:01 B2M MHCI -13922 chip0516_23059 -1.18 9.92 Chip4 healthy_9 healthy _ 6746 6551 NP140-148 FLU 0.76 102 NP140-148 112 6439 3 InfluenzaA NP HSNLNDATY Naive T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*01:01 B2M MHCI -13923 chip0516_699132 5.63 11.85 Chip4 healthy_8 healthy TGTGCAGAGAGTAGCGCCGATAGCAACTATCAGTTAATCTGG CAESSADSNYQLIW TRAV5*01 TRAJ33*01 33.0 2117.0 CAESSADSNYQLIW_ 1 5653 EBNA3A-158-166 EBV 0.57 444 EBNA3A-158-166 121 5532 7 EBV EBNA3A QAKWRLQTL transitional T cells between effector and memory populations PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-B*08:01 B2M MHCI -13924 chip0516_677978 -3.6 12.7 Chip4 healthy_8 healthy TGTGTGGTTGTATCAGGAGGAAGCTACATACCTACATTT CVVVSGGSYIPTF TRAV12-1*01 TRAJ6*01 22.0 1044.0 CVVVSGGSYIPTF_ 1 5553 ZNT8-YAY-8 ZNT8 0.92 54 ZNT8-YAY-8 100 5453 1 HomoSapiens ZNT8 YAYAKWKL Naive T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-B*08:01 B2M MHCI -13925 chip0516_234612 11.53 11.89 Chip4 healthy_6 healthy _ 6746 3926 EBV-LMP2A EBV 0.97 700 EBV-LMP2A 116 3810 11 EBV LMP2A CLGGLLTMV effector T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*02:01 B2M MHCI -13926 chip0516_194223 11.66 10.12 Chip4 healthy_8 healthy TGTGCCAGCAGCTCCGGACAGGCCTACGAGCAGTACTTC CASSSGQAYEQYF TRBV7-8*01 TRBJ2-7*01 6.0 301.0 _CASSSGQAYEQYF 49 5241 EBNA3A-193-201 EBV 0.81 1022 EBNA3A-193-201 116 5125 9 EBV EBNA3A FLRGRAYGL effector memory T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-B*08:01 B2M MHCI -13927 chip0516_10321 -5.24 9.5 Chip4 healthy_7 healthy _ 6746 5265 POL-132-140 HIV 0.82 37 POL-132-140 110 5155 2 HIV-1 POL LVGPTPVNI Naive T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*02:01 B2M MHCI -13928 chip0516_465031 -2.52 9.97 Chip4 healthy_8 healthy _ 6746 4638 LMP2A-CPL EBV 0.74 44 LMP2A-CPL 111 4527 4 EBV LMP2A CPLSKILL Naive T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-B*08:01 B2M MHCI -13929 chip0516_631958 5.25 9.83 Chip4 healthy_7 healthy TGTGCCAGCAGTTACCAGGGAGGTAACTATGGCTACACCTTC CASSYQGGNYGYTF TRBV6-5*01 TRBJ1-2*01 23.0 1055.0 _CASSYQGGNYGYTF 4 4818 EBV-LMP2-FLY EBV 0.89 355 EBV-LMP2-FLY 111 4707 6 EBV LMP2 FLYALALLL central memory T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*02:01 B2M MHCI -13930 chip0516_355018 6.82 11.86 Chip4 healthy_8 healthy TGCATCCTGCCCCTTGCTGGTGGTTCTCGCTATGGAAAGCTGACATTT CILPLAGGSRYGKLTF TRAV26-2*01 TRAJ52*01 8.0 246.0 TGTGCCAGCAGCTTAGGACAGGCCTACGAGCAGTACTTC CASSLGQAYEQYF TRBV7-8*01 TRBJ2-7*01 7.0 666.0 CILPLAGGSRYGKLTF_CASSLGQAYEQYF 1 5357 EBNA3A-193-201 EBV 0.78 1022 EBNA3A-193-201 93 5264 7 EBV EBNA3A FLRGRAYGL transitional T cells between effector and memory populations PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-B*08:01 B2M MHCI -13931 chip0516_752078 10.94 6.92 Chip4 healthy_6 healthy _ 6746 8333 EBV-LMP2A EBV 0.94 700 EBV-LMP2A 124 8209 10 EBV LMP2A CLGGLLTMV effector memory T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*02:01 B2M MHCI -13932 chip0516_864621 -3.68 9.57 Chip4 healthy_8 healthy TGTGCTGTGAGTCCACTTACCCTTAACAATGACATGCGCTTT CAVSPLTLNNDMRF TRAV8-6*01 TRAJ43*01 4.0 106.0 TGTGCCAGCAGCTTAGGGGGCCGAGAAGCTTTCTTT CASSLGGREAFF TRBV7-9*01 TRBJ1-1*01 47.0 2939.0 CAVSPLTLNNDMRF_CASSLGGREAFF 1 5726 EBNA3A-193-201 EBV 0.78 1022 EBNA3A-193-201 100 5626 2 EBV EBNA3A FLRGRAYGL Naive T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-B*08:01 B2M MHCI -13933 chip0516_350704 13.22 7.5 Chip4 healthy_6 healthy TGTGCTGTGGCCCTCTCAAGCAAATCAACCTTT CAVALSSKSTF TRAV8-3*01 TRAJ27*01 15.0 971.0 TGCGCCAGCAGCGGGGACGGAATGAACACTGAAGCTTTCTTT CASSGDGMNTEAFF TRBV10-2*01 TRBJ1-1*01 22.0 1184.0 CAVALSSKSTF_CASSGDGMNTEAFF 50 5259 EBV-LMP2A EBV 1.0 700 EBV-LMP2A 112 5147 10 EBV LMP2A CLGGLLTMV effector memory T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*02:01 B2M MHCI -13934 chip0516_851761 7.47 13.49 Chip4 healthy_8 healthy TGTGCCAGCAGCCTCGGGACTAGCGGGGGCTATGAGCAGTTCTTC CASSLGTSGGYEQFF TRBV11-1*01 TRBJ2-1*01 12.0 1019.0 _CASSLGTSGGYEQFF 1 4232 NP225-233 FLU 0.94 23 NP225-233 84 4148 7 InfluenzaA NP ILKGKFQTA transitional T cells between effector and memory populations PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-B*08:01 B2M MHCI -13935 chip0516_251070 -4.44 10.93 Chip4 healthy_7 healthy TGTGCTACGGTCCCAAATTATGGAGGAAGCCAAGGAAATCTCATCTTT CATVPNYGGSQGNLIF TRAV17*01 TRAJ42*01 24.0 496.0 TGTGCCAGCAGAACCCAGACCGGACCTAATGAGCAGTTCTTC CASRTQTGPNEQFF TRBV6-1*01 TRBJ2-1*01 36.0 1297.0 CATVPNYGGSQGNLIF_CASRTQTGPNEQFF 1 4144 ZNT8-145-153 ZNT8 1.0 14 ZNT8-145-153 86 4058 1 HomoSapiens ZNT8 LLSILCIWV Naive T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*02:01 B2M MHCI -13936 chip0516_200248 6.77 13.8 Chip4 healthy_9 healthy TGTGCCAGCAGCCTGGGGACTAGCGGGGGCTACGAGCAGTACTTC CASSLGTSGGYEQYF TRBV11-1*01 TRBJ2-7*01 22.0 1532.0 _CASSLGTSGGYEQYF 1 4343 NP225-233 FLU 0.6 23 NP225-233 109 4234 7 InfluenzaA NP ILKGKFQTA transitional T cells between effector and memory populations PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-B*08:01 B2M MHCI -13937 chip0516_63615 -2.7 8.11 Chip4 healthy_6 healthy _ 6746 7580 PTPRN-790-798 PTPRN 0.93 6 NEG 101 7479 2 HomoSapiens PTPRN TIADFWQMV Naive T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*02:01 B2M MHCI -13938 chip0516_719456 11.57 6.65 Chip4 healthy_8 healthy TGCATCCTGCCCCTTGCTGGTGGTACTAGCTATGGAAAGCTGACATTT CILPLAGGTSYGKLTF TRAV26-2*01 TRAJ52*01 7.0 450.0 TGTGCCAGCAGCTCCGGACAGGCCTACGAGCAGTACTTC CASSSGQAYEQYF TRBV7-8*01 TRBJ2-7*01 33.0 1703.0 CILPLAGGTSYGKLTF_CASSSGQAYEQYF 40 6837 EBNA3A-193-201 EBV 0.9 1022 EBNA3A-193-201 132 6705 10 EBV EBNA3A FLRGRAYGL effector memory T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-B*08:01 B2M MHCI -13939 chip0516_26390 11.08 10.48 Chip4 healthy_6 healthy _ 6746 5316 EBV-LMP2A EBV 1.0 700 EBV-LMP2A 102 5214 9 EBV LMP2A CLGGLLTMV effector memory T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*02:01 B2M MHCI -13940 chip0516_764307 -2.84 8.57 Chip4 healthy_8 healthy TGCAGTGCTAGAGAGGGGGATGGGGGGGCCTGGGAGACCCAGTACTTC CSAREGDGGAWETQYF TRBV20-1*01 TRBJ2-5*01 29.0 1542.0 _CSAREGDGGAWETQYF 1 4696 G6PC2-YLK-8 IGRP 0.95 27 G6PC2-YLK-8 106 4590 2 HomoSapiens G6PC2 YLKTNLFL Naive T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-B*08:01 B2M MHCI -13941 chip0516_484417 -1.35 11.8 Chip4 healthy_6 healthy _ 6746 4479 PGT-178 PGT 0.72 1480 PGT-178 90 4389 3 HomoSapiens PGT LLAGIGTVPI Naive T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*02:01 B2M MHCI -13942 chip0516_311369 10.87 10.04 Chip4 healthy_6 healthy _ 6746 5089 EBV-LMP2A EBV 0.9 700 EBV-LMP2A 133 4956 9 EBV LMP2A CLGGLLTMV effector memory T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*02:01 B2M MHCI -13943 chip0516_290231 5.15 10.24 Chip4 healthy_6 healthy TGTGCTGTGGCCCTCTCAAGCAAATCAACCTTT CAVALSSKSTF TRAV8-3*01 TRAJ27*01 1.0 91.0 CAVALSSKSTF_ 58 5639 EBV-LMP2A EBV 0.92 700 EBV-LMP2A 83 5556 6 EBV LMP2A CLGGLLTMV central memory T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*02:01 B2M MHCI -13944 chip0516_542698 9.57 8.82 Chip4 healthy_8 healthy _ 6746 6022 BZLF1-190-197 EBV 0.97 2156 BZLF1-190-197 114 5908 8 EBV BZLF1 RAKFKQLL effector memory T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-B*08:01 B2M MHCI -13945 chip0516_879273 10.96 11.8 Chip4 healthy_6 healthy TGTGCTGTGGCCCTCTCAAGCAAATCAACCTTT CAVALSSKSTF TRAV8-3*01 TRAJ27*01 1.0 43.0 CAVALSSKSTF_ 58 4275 EBV-LMP2A EBV 1.0 700 NEG 93 4182 9 EBV LMP2A CLGGLLTMV effector memory T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*02:01 B2M MHCI -13946 chip0516_662364 11.16 10.92 Chip4 healthy_6 healthy TGCGCCAGCAGCGGGGACGGAATGAACACTGAAGCTTTCTTT CASSGDGMNTEAFF TRBV10-2*01 TRBJ1-1*01 27.0 1365.0 _CASSGDGMNTEAFF 131 5103 EBV-LMP2A EBV 0.94 700 EBV-LMP2A 85 5018 9 EBV LMP2A CLGGLLTMV effector memory T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*02:01 B2M MHCI -13947 chip0516_693138 12.13 8.73 Chip4 healthy_8 healthy TGCATCCTGCCCCTTGCTGGTGATACTAGCTATGGAAAGCTGACATTT CILPLAGDTSYGKLTF TRAV26-2*01 TRAJ52*01 28.0 1770.0 CILPLAGDTSYGKLTF_ 2 3784 EBNA3A-193-201 EBV 0.85 1022 EBNA3A-193-201 99 3685 10 EBV EBNA3A FLRGRAYGL effector memory T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-B*08:01 B2M MHCI -13948 chip0516_470998 14.48 13.0 Chip4 healthy_6 healthy TGTGCAGAGGACCATGCACTCAACTTC CAEDHALNF TRAV23/DV6*01 TRAJ41*01 1.0 14.0 TGTGCCAGCAGCTCGGGACAGGGGGACAATGAGCAGTTCTTC CASSSGQGDNEQFF TRBV11-3*01 TRBJ2-1*01 16.0 694.0 CAEDHALNF_CASSSGQGDNEQFF 6 2902 EBV-BLMF1 EBV 0.71 2531 NEG 109 2793 12 EBV BLMF1 GLCTLVAML effector T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*02:01 B2M MHCI -13949 chip0516_222648 10.69 10.61 Chip4 healthy_6 healthy TGCGCCAGCAGCGGGGACGGAATGAACACTGAAGCTTTCTTT CASSGDGMNTEAFF TRBV10-2*01 TRBJ1-1*01 16.0 928.0 _CASSGDGMNTEAFF 131 5580 EBV-LMP2A EBV 0.97 700 EBV-LMP2A 95 5485 9 EBV LMP2A CLGGLLTMV effector memory T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*02:01 B2M MHCI -13950 chip0516_276174 11.8 8.68 Chip4 healthy_8 healthy TGCATCCTGCCCCTTGCTGGTGGTACTAGCTATGGAAAGCTGACATTT CILPLAGGTSYGKLTF TRAV26-2*01 TRAJ52*01 3.0 23.0 TGTGCCAGCAGCTCCAGACAGGCCTACGAGCAGTACTTC CASSSRQAYEQYF TRBV7-8*01 TRBJ2-7*01 27.0 1381.0 CILPLAGGTSYGKLTF_CASSSRQAYEQYF 1 3909 EBNA3A-193-201 EBV 0.95 1022 EBNA3A-193-201 116 3793 10 EBV EBNA3A FLRGRAYGL effector memory T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-B*08:01 B2M MHCI -13951 chip0516_181603 -2.65 8.01 Chip4 healthy_9 healthy TGCAGTGTTCCTAGCCGTATTACCTACGAGCAGTACTTC CSVPSRITYEQYF TRBV20-1*01 TRBJ2-7*01 53.0 5561.0 _CSVPSRITYEQYF 1 5557 NP44-52 FLU 0.52 474 NP44-52 87 5470 2 InfluenzaA NP CTELKLSDY Naive T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*01:01 B2M MHCI -13952 chip0516_178531 -2.67 7.37 Chip4 healthy_8 healthy _ 6746 10133 GFAP-LLN-8 GFAP 0.4 6 GFAP-LLN-8 114 10019 2 HomoSapiens GFAP LLNVKLAL Naive T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-B*08:01 B2M MHCI -13953 chip0516_116573 9.44 9.89 Chip4 healthy_6 healthy TGTGCCAGCAGCTCGGGACAGGGGGACAATGAGCAGTTCTTC CASSSGQGDNEQFF TRBV11-3*01 TRBJ2-1*01 9.0 523.0 _CASSSGQGDNEQFF 12 6151 EBV-BLMF1 EBV 0.86 2531 EBV-BLMF1 105 6046 9 EBV BLMF1 GLCTLVAML effector memory T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*02:01 B2M MHCI -13954 chip0516_73623 13.6 8.72 Chip4 healthy_6 healthy TGTGCTGTGGCCCTCTCAAGCAAATCAACCTTT CAVALSSKSTF TRAV8-3*01 TRAJ27*01 1.0 40.0 TGTGCTGTTCTAATGGATAGCAACTATCAGTTAATCTGG CAVLMDSNYQLIW TRAV12-3*01 TRAJ33*01 1.0 11.0 0.5 TGCGCCAGCAACGGGGACGGAATGAACACTGAAGCTTTCTTT CASNGDGMNTEAFF TRBV10-2*01 TRBJ1-1*01 24.0 1430.0 CAVALSSKSTF_CASNGDGMNTEAFF 1 5359 EBV-LMP2A EBV 0.98 700 EBV-LMP2A 109 5250 12 EBV LMP2A CLGGLLTMV effector T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*02:01 B2M MHCI -13955 chip0516_47665 10.59 10.44 Chip4 healthy_6 healthy TGCGCCAGCAGCGGGGACGGAATGAACACTGAAGCTTTCTTT CASSGDGMNTEAFF TRBV10-2*01 TRBJ1-1*01 20.0 1060.0 _CASSGDGMNTEAFF 131 6364 EBV-LMP2A EBV 0.93 700 EBV-LMP2A 121 6243 9 EBV LMP2A CLGGLLTMV effector memory T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*02:01 B2M MHCI -13956 chip0516_305491 -0.85 8.7 Chip4 healthy_7 healthy TGTGCCAGCATACGCTACAATGAGCAGTTCTTC CASIRYNEQFF TRBV6-1*01 TRBJ2-1*01 29.0 2516.0 _CASIRYNEQFF 1 5341 ZNT8-115-123 ZNT8 0.82 74 NEG 101 5240 4 HomoSapiens ZNT8 LLSLFSLWL Naive T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*02:01 B2M MHCI -13957 chip0516_353564 7.68 10.94 Chip4 healthy_8 healthy TGTGCTGGGCAGCTGGATAACACCGACAAGCTCATCTTT CAGQLDNTDKLIF TRAV35*01 TRAJ34*01 17.0 1034.0 TGCGCCAGCAGCTTGGATTTGGCTAACCCGGAGACCCAGTACTTC CASSLDLANPETQYF TRBV5-1*01 TRBJ2-5*01 68.0 3873.0 CAGQLDNTDKLIF_CASSLDLANPETQYF 1 6211 BZLF1-190-197 EBV 0.69 2156 BZLF1-190-197 107 6104 7 EBV BZLF1 RAKFKQLL transitional T cells between effector and memory populations PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-B*08:01 B2M MHCI -13958 chip0516_161802 11.7 9.97 Chip4 healthy_6 healthy TGCGCCAGCAGCGGGGACGGAATGAACACTGAAGCTTTCTTT CASSGDGMNTEAFF TRBV10-2*01 TRBJ1-1*01 4.0 43.0 _CASSGDGMNTEAFF 131 5245 EBV-LMP2A EBV 1.0 700 EBV-LMP2A 85 5160 9 EBV LMP2A CLGGLLTMV effector memory T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*02:01 B2M MHCI -13959 chip0516_875974 10.79 10.76 Chip4 healthy_6 healthy TGTGCCGTGAGCGACACCGACAAGCTCATCTTT CAVSDTDKLIF TRAV8-1*01 TRAJ34*01 1.0 14.0 TGTGCCAGTAGGGGACTAGTGGGGAGCGCCGGGGAGCTGTTTTTT CASRGLVGSAGELFF TRBV19*01 TRBJ2-2*01 27.0 1461.0 CAVSDTDKLIF_CASRGLVGSAGELFF 1 4392 EBV-BRLF1 EBV 0.69 1264 NEG 111 4281 9 EBV BRLF1 YVLDHLIVV effector memory T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*02:01 B2M MHCI -13960 chip0516_843076 11.22 12.13 Chip4 healthy_6 healthy _ 6746 3357 EBV-BRLF1 EBV 0.75 1264 EBV-BRLF1 94 3263 9 EBV BRLF1 YVLDHLIVV effector memory T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*02:01 B2M MHCI -13961 chip0516_23053 5.76 13.32 Chip4 healthy_6 healthy TGTGCCAGCAGTCCAAGGACATTTCAGTACTTC CASSPRTFQYF TRBV28*01 TRBJ2-7*01 34.0 3126.0 _CASSPRTFQYF 1 6170 ROTA-VP6 ROTA 0.88 47 ROTA-VP6 110 6060 7 RotavirusA VP6 TLLANVTAV transitional T cells between effector and memory populations PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*02:01 B2M MHCI -13962 chip0516_473248 -2.29 11.45 Chip4 healthy_9 healthy _ 6746 3884 NP30-38 FLU 0.5 72 NEG 86 3798 4 InfluenzaA NP RPIIRPATL Naive T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-B*08:01 B2M MHCI -13963 chip0516_434085 12.19 7.34 Chip4 healthy_8 healthy TGTGCCAGCAGCTTAGGACAGGCCTACGAGCAGTACTTC CASSLGQAYEQYF TRBV7-8*01 TRBJ2-7*01 23.0 1583.0 _CASSLGQAYEQYF 175 4632 EBNA3A-193-201 EBV 0.68 1022 EBNA3A-193-201 103 4529 10 EBV EBNA3A FLRGRAYGL effector memory T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-B*08:01 B2M MHCI -13964 chip0516_269185 12.35 8.52 Chip4 healthy_6 healthy TGTGCCAGCAGCTCCTCCGCCCTAATCAGCGATGAGCAGTTCTTC CASSSSALISDEQFF TRBV11-2*01 TRBJ2-1*01 12.0 513.0 _CASSSSALISDEQFF 6 4607 EBV-BRLF1 EBV 0.79 1264 NEG 112 4495 10 EBV BRLF1 YVLDHLIVV effector memory T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*02:01 B2M MHCI -13965 chip0516_405649 -3.24 9.03 Chip4 healthy_8 healthy TGTGCTGTGAGAGACAGGAACTATGGTCAGAACTTTGTCTTT CAVRDRNYGQNFVF TRAV3*01 TRAJ26*01 32.0 2054.0 TGCAGTGCTAGAGACGAAGGTCCCTACGAGCAGTACTTC CSARDEGPYEQYF TRBV20-1*01 TRBJ2-7*01 28.0 2165.0 CAVRDRNYGQNFVF_CSARDEGPYEQYF 1 6842 ZNT8-YAY-8 ZNT8 0.53 54 NEG 110 6732 2 HomoSapiens ZNT8 YAYAKWKL Naive T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-B*08:01 B2M MHCI -13966 chip0516_160903 9.61 11.19 Chip4 healthy_8 healthy TGTGCCAGCAGCTTAGGACAGGCCTACGAGCAGTACTTC CASSLGQAYEQYF TRBV7-8*01 TRBJ2-7*01 9.0 599.0 _CASSLGQAYEQYF 175 7054 EBNA3A-193-201 EBV 0.71 1022 EBNA3A-193-201 98 6956 9 EBV EBNA3A FLRGRAYGL effector memory T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-B*08:01 B2M MHCI -13967 chip0516_559314 -3.23 8.66 Chip4 healthy_9 healthy _ 6746 5764 G6PC2-LTS-10 IGRP 0.93 59 G6PC2-LTS-10 91 5673 2 HomoSapiens G6PC2 LTSLTILQLY Naive T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*01:01 B2M MHCI -13968 chip0516_798905 10.81 10.79 Chip4 healthy_6 healthy _ 6746 4797 EBV-LMP2A EBV 0.94 700 EBV-LMP2A 111 4686 9 EBV LMP2A CLGGLLTMV effector memory T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*02:01 B2M MHCI -13969 chip0516_567366 12.47 7.43 Chip4 healthy_10 healthy TGCATCCTTCCTCTGGCTGGTGGTACTCGCTATGGAAAGCTGACTTTT CILPLAGGTRYGKLTF TRAV26-2*01 TRAJ52*01 6.0 198.0 TGTGCCAGCAGCTTAGGACAGGCCTACGAGCAGTACTTC CASSLGQAYEQYF TRBV7-8*01 TRBJ2-7*01 13.0 617.0 CILPLAGGTRYGKLTF_CASSLGQAYEQYF 5 4196 EBNA3A-193-201 EBV 0.66 1022 EBNA3A-193-201 119 4077 10 EBV EBNA3A FLRGRAYGL effector memory T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-B*08:01 B2M MHCI -13970 chip0516_336188 -1.05 7.92 Chip4 healthy_7 healthy TGTGCCTTCAACACCGGTAACCAGTTCTATTCT CAFNTGNQFYS TRAV24*01 TRAJ49*01 16.0 2027.0 CAFNTGNQFYS_ 1 5860 IGRP-228-236 IGRP 0.95 16 IGRP-228-236 109 5751 4 HomoSapiens IGRP LNIDLLWSV Naive T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*02:01 B2M MHCI -13971 chip0516_198873 7.72 11.7 Chip4 healthy_9 healthy TGCAGTGCGGTCGACAGGTACTCCTACGAGCAGTACTTC CSAVDRYSYEQYF TRBV20-1*01 TRBJ2-7*01 12.0 911.0 _CSAVDRYSYEQYF 1 4424 NP44-52 FLU 0.8 474 NP44-52 93 4331 7 InfluenzaA NP CTELKLSDY transitional T cells between effector and memory populations PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*01:01 B2M MHCI -13972 chip0516_189511 11.65 8.77 Chip4 healthy_8 healthy _ 6746 4326 EBNA3A-193-201 EBV 0.9 1022 EBNA3A-193-201 107 4219 10 EBV EBNA3A FLRGRAYGL effector memory T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-B*08:01 B2M MHCI -13973 chip0516_645222 15.42 10.74 Chip4 healthy_7 healthy TGCGCCAGCAGTCATGGGAACTATGGCTACACCTTC CASSHGNYGYTF TRBV5-1*01 TRBJ1-2*01 9.0 521.0 _CASSHGNYGYTF 15 3003 MART1-ALA MART1 0.5 269 NEG 136 2867 12 HomoSapiens MART1 ALAGIGILTV effector T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*02:01 B2M MHCI -13974 chip0516_306004 7.75 11.41 Chip4 healthy_8 healthy TGTGCCAGCAGCTCAACGTCACCGGGGGACACTGAAGCTTTCTTT CASSSTSPGDTEAFF TRBV7-9*01 TRBJ1-1*01 40.0 1818.0 _CASSSTSPGDTEAFF 1 6406 BZLF1-190-197 EBV 0.65 2156 BZLF1-190-197 106 6300 7 EBV BZLF1 RAKFKQLL transitional T cells between effector and memory populations PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-B*08:01 B2M MHCI -13975 chip0516_778295 13.76 13.37 Chip4 healthy_8 healthy TGCATCCTGCCCCTTGCTGGTGGTACTAGCTATGGAAAGCTGACATTT CILPLAGGTSYGKLTF TRAV26-2*01 TRAJ52*01 13.0 911.0 TGTGCCAGCAGCTCCGGACAGGCCTACGAGCAGTACTTC CASSSGQAYEQYF TRBV7-8*01 TRBJ2-7*01 21.0 1382.0 CILPLAGGTSYGKLTF_CASSSGQAYEQYF 40 2297 EBNA3A-193-201 EBV 0.95 1022 EBNA3A-193-201 117 2180 12 EBV EBNA3A FLRGRAYGL effector T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-B*08:01 B2M MHCI -13976 chip0516_787145 9.32 13.93 Chip4 healthy_6 healthy _ 6746 2331 M1 FLU 1.0 1250 NEG 83 2248 11 InfluenzaA M1 GILGFVFTL effector T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*02:01 B2M MHCI -13977 chip0516_320144 10.7 11.53 Chip4 healthy_6 healthy TGCGCCAGCAGCGGGGACGGAATGAACACTGAAGCTTTCTTT CASSGDGMNTEAFF TRBV10-2*01 TRBJ1-1*01 29.0 1928.0 _CASSGDGMNTEAFF 131 4383 EBV-LMP2A EBV 0.91 700 EBV-LMP2A 97 4286 9 EBV LMP2A CLGGLLTMV effector memory T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*02:01 B2M MHCI -13978 chip0516_231971 -3.29 8.95 Chip4 healthy_6 healthy TGTGCAATGAGCCTATCTAACTTTGGAAATGAGAAATTAACCTTT CAMSLSNFGNEKLTF TRAV12-3*01 TRAJ48*01 12.0 329.0 TGCATCCTGAGACTCTATAACTCAGGGCGGATCTGAAAAGCTGGTCTTT CILRLYNS??gGGSEKLVF TRAV26-2*01 TRAJ57*01 17.0 696.0 0.55 TGTGCCAGCAGTCCGGGAGGGGGGGAAGAGACCCAGTACTTC CASSPGGGEETQYF TRBV25-1*01 TRBJ2-5*01 59.0 3716.0 CAMSLSNFGNEKLTF_CASSPGGGEETQYF 1 7222 PGT-178 PGT 0.52 1480 PGT-178 107 7115 2 HomoSapiens PGT LLAGIGTVPI Naive T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*02:01 B2M MHCI -13979 chip0516_809971 11.63 7.07 Chip4 healthy_6 healthy TGTGCCAGCAGTTACCAGGGTGGCAAAGCGGGCTACACCTTC CASSYQGGKAGYTF TRBV6-5*01 TRBJ1-2*01 28.0 1470.0 _CASSYQGGKAGYTF 1 5985 EBV-LMP2-FLY EBV 0.79 355 NEG 115 5870 10 EBV LMP2 FLYALALLL effector memory T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*02:01 B2M MHCI -13980 chip0516_257790 9.99 9.87 Chip4 healthy_6 healthy _ 6746 6029 EBV-LMP2A EBV 0.95 700 EBV-LMP2A 111 5918 9 EBV LMP2A CLGGLLTMV effector memory T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*02:01 B2M MHCI -13981 chip0516_560338 10.81 9.18 Chip4 healthy_6 healthy TGTGCTGTGGCCCTCTCAAGCAAATCAACCTTT CAVALSSKSTF TRAV8-3*01 TRAJ27*01 4.0 652.0 TGCGCCAGCAGCGGGGACGGAATGAACACTGAAGCTTTCTTT CASSGDGMNTEAFF TRBV10-2*01 TRBJ1-1*01 2.0 81.0 CAVALSSKSTF_CASSGDGMNTEAFF 50 6892 EBV-LMP2A EBV 0.86 700 EBV-LMP2A 109 6783 10 EBV LMP2A CLGGLLTMV effector memory T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*02:01 B2M MHCI -13982 chip0516_269211 9.45 10.86 Chip4 healthy_8 healthy _ 6746 6568 EBNA3A-193-201 EBV 0.88 1022 EBNA3A-193-201 119 6449 9 EBV EBNA3A FLRGRAYGL effector memory T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-B*08:01 B2M MHCI -13983 chip0516_258657 -3.78 11.88 Chip4 healthy_8 healthy _ 6746 5526 G6PC2-NLI-8 IGRP 0.79 32 NEG 86 5440 1 HomoSapiens G6PC2 NLIFKWIL Naive T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-B*08:01 B2M MHCI -13984 chip0516_765464 -3.81 8.6 Chip4 healthy_9 healthy _ 6746 6213 G6PC2-NLI-8 IGRP 0.85 32 G6PC2-NLI-8 87 6126 2 HomoSapiens G6PC2 NLIFKWIL Naive T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-B*08:01 B2M MHCI -13985 chip0516_551328 8.48 13.85 Chip4 healthy_6 healthy TGTGCCAGCAGACCTCTGAGCGGGAGTGGTGAGACCCAGTACTTC CASRPLSGSGETQYF TRBV28*01 TRBJ2-5*01 22.0 1136.0 _CASRPLSGSGETQYF 1 2950 EBV-BRLF1 EBV 0.87 1264 NEG 87 2863 11 EBV BRLF1 YVLDHLIVV effector T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*02:01 B2M MHCI -13986 chip0516_239873 6.92 13.77 Chip4 healthy_10 healthy TGTGCCAGTAGTCACCCTTCGGGACAGGGTCTTTATAGCAATCAGCCCCAGCATTTT CASSHPSGQGLYSNQPQHF TRBV19*01 TRBJ1-5*01 2.0 27.0 _CASSHPSGQGLYSNQPQHF 2 4023 NP44-52 FLU 0.8 474 NP44-52 96 3927 7 InfluenzaA NP CTELKLSDY transitional T cells between effector and memory populations PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*01:01 B2M MHCI -13987 chip0516_762826 12.74 7.73 Chip4 healthy_8 healthy TGCATCCTCCCCCTTACTGGAGGTACTAGCTCTGGACTCCTGACATTT CILPLTGGTSSGLLTF TRAV26-2*01 TRAJ52*01 2.0 80.0 TGTGCCAGCAGCTTAGGACAGGCCTACGAGCAGTACTTC CASSLGQAYEQYF TRBV7-8*01 TRBJ2-7*01 41.0 2122.0 CILPLTGGTSSGLLTF_CASSLGQAYEQYF 1 3452 EBNA3A-193-201 EBV 0.9 1022 EBNA3A-193-201 123 3329 10 EBV EBNA3A FLRGRAYGL effector memory T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-B*08:01 B2M MHCI -13988 chip0516_403726 6.96 12.98 Chip4 healthy_6 healthy TGTGCCAGCAGCCCTCCCTACAATGAGCAGTTCTTC CASSPPYNEQFF TRBV7-8*01 TRBJ2-1*01 5.0 565.0 _CASSPPYNEQFF 4 4434 ZNT8-115-123 ZNT8 1.0 74 ZNT8-115-123 104 4330 7 HomoSapiens ZNT8 LLSLFSLWL transitional T cells between effector and memory populations PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*02:01 B2M MHCI -13989 chip0516_503752 11.5 8.79 Chip4 healthy_8 healthy TGCATCCTGCCCCTTGCTGGTGGTACTAGCTATGGAAAGCTGACATTT CILPLAGGTSYGKLTF TRAV26-2*01 TRAJ52*01 67.0 3532.0 TGTGCCAGCAGCTTAGGACAGGCCTACGAGCAGTACTTC CASSLGQAYEQYF TRBV7-8*01 TRBJ2-7*01 14.0 988.0 CILPLAGGTSYGKLTF_CASSLGQAYEQYF 308 4743 EBNA3A-193-201 EBV 0.87 1022 EBNA3A-193-201 104 4639 10 EBV EBNA3A FLRGRAYGL effector memory T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-B*08:01 B2M MHCI -13990 chip0516_398719 -2.4 8.94 Chip4 healthy_8 healthy TGTGCCAGCAGTTACCTTGCGGGGGGACTCCAAGAGACCCAGTACTTC CASSYLAGGLQETQYF TRBV6-5*01 TRBJ2-5*01 57.0 3067.0 _CASSYLAGGLQETQYF 1 5857 Nef90-97 HIV 0.44 8 NEG 105 5752 3 HIV-1 Nef FLKEKGGL Naive T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-B*08:01 B2M MHCI -13991 chip0516_56917 11.0 9.77 Chip4 healthy_6 healthy TGTGCTGTGGCCCTCTCAAGCAAATCAACCTTT CAVALSSKSTF TRAV8-3*01 TRAJ27*01 10.0 779.0 CAVALSSKSTF_ 58 4993 EBV-LMP2A EBV 0.85 700 EBV-LMP2A 105 4888 9 EBV LMP2A CLGGLLTMV effector memory T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*02:01 B2M MHCI -13992 chip0516_229477 -2.94 10.77 Chip4 healthy_6 healthy TGCAGTGCTTCTCGGACAGCAATGAACACTGAAGCTTTCTTT CSASRTAMNTEAFF TRBV20-1*01 TRBJ1-1*01 1.0 21.0 _CSASRTAMNTEAFF 1 5708 MART1-ALA MART1 0.47 269 NEG 106 5602 4 HomoSapiens MART1 ALAGIGILTV Naive T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*02:01 B2M MHCI -13993 chip0516_881043 7.36 13.88 Chip4 healthy_6 healthy _ 6746 3041 M1 FLU 0.96 1250 M1 111 2930 7 InfluenzaA M1 GILGFVFTL transitional T cells between effector and memory populations PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*02:01 B2M MHCI -13994 chip0516_841733 6.67 12.68 Chip4 healthy_9 healthy TGTGTTGTGAGTGATCGGAACTTCAACAAATTTTACTTT CVVSDRNFNKFYF TRAV8-2*01 TRAJ21*01 39.0 2789.0 TGTGCCATCGCAAACGGGCAGGGGCCGGGCGCAGATACGCAGTATTTT CAIANGQGPGADTQYF TRBV10-3*01 TRBJ2-3*01 3.0 144.0 CVVSDRNFNKFYF_CAIANGQGPGADTQYF 1 4519 NP44-52 FLU 0.92 474 NP44-52 114 4405 7 InfluenzaA NP CTELKLSDY transitional T cells between effector and memory populations PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*01:01 B2M MHCI -13995 chip0516_427384 -2.93 10.3 Chip4 healthy_8 healthy TGTGTGGTGAGTCCGGCCAACCAGGCAGGAACTGCTCTGATCTTT CVVSPANQAGTALIF TRAV10*01 TRAJ15*01 5.0 229.0 CVVSPANQAGTALIF_ 1 6646 LMP2A-CPL EBV 0.89 44 LMP2A-CPL 95 6551 3 EBV LMP2A CPLSKILL Naive T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-B*08:01 B2M MHCI -13996 chip0516_495002 11.63 7.7 Chip4 healthy_8 healthy TGCATCCTGCCCCTTGCTGGTGGTACTAGCTATGGAAAGCTGACATTT CILPLAGGTSYGKLTF TRAV26-2*01 TRAJ52*01 37.0 2004.0 TGTGCCAGCAGCTTAGGACAGGCCTACGAGCAGTACTTC CASSLGQAYEQYF TRBV7-8*01 TRBJ2-7*01 33.0 1974.0 CILPLAGGTSYGKLTF_CASSLGQAYEQYF 308 5371 EBNA3A-193-201 EBV 0.9 1022 EBNA3A-193-201 101 5270 10 EBV EBNA3A FLRGRAYGL effector memory T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-B*08:01 B2M MHCI -13997 chip0516_489513 -2.7 13.93 Chip4 healthy_7 healthy _ 6746 3281 GAD65-159-167 GAD65 0.93 7 NEG 99 3182 1 HomoSapiens GAD65 ILMHCQTTL Naive T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*02:01 B2M MHCI -13998 chip0516_312074 10.03 11.01 Chip4 healthy_8 healthy TGTGCTGTGACCCTTACCCTCTACTCTGGGGCTGGGAGTTACCAACTCACTTTC CAVTLTLYSGAGSYQLTF TRAV21*01 TRAJ28*01 2.0 253.0 CAVTLTLYSGAGSYQLTF_ 3 6212 EBNA3A-158-166 EBV 0.63 444 EBNA3A-158-166 113 6099 9 EBV EBNA3A QAKWRLQTL effector memory T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-B*08:01 B2M MHCI -13999 chip0516_856498 11.69 8.3 Chip4 healthy_6 healthy TGTGCCAGTAGGGGACTAGTGGGGAGCGCCGGGGAGCTGTTTTTT CASRGLVGSAGELFF TRBV19*01 TRBJ2-2*01 18.0 947.0 _CASRGLVGSAGELFF 5 4384 EBV-BRLF1 EBV 1.0 1264 EBV-BRLF1 104 4280 10 EBV BRLF1 YVLDHLIVV effector memory T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*02:01 B2M MHCI -14000 chip0516_603740 11.45 6.9 Chip4 healthy_8 healthy TGCATCCTGCCCCTTGCTGGTGGTACTAGCTATGGAAAGCTGACATTT CILPLAGGTSYGKLTF TRAV26-2*01 TRAJ52*01 16.0 1083.0 TGTGCCAGCAGCTTAGGACAGGCCTACGAGCAGTACTTC CASSLGQAYEQYF TRBV7-8*01 TRBJ2-7*01 42.0 2231.0 CILPLAGGTSYGKLTF_CASSLGQAYEQYF 308 6403 EBNA3A-193-201 EBV 0.73 1022 EBNA3A-193-201 123 6280 10 EBV EBNA3A FLRGRAYGL effector memory T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-B*08:01 B2M MHCI -14001 chip0516_407720 -4.19 9.49 Chip4 healthy_9 healthy TGTGCCAGCAGCGAATACCCTGCAGATGAAGCTTTCTTT CASSEYPADEAFF TRBV9*01 TRBJ1-1*01 22.0 1711.0 _CASSEYPADEAFF 1 6232 NP413-421 FLU 0.43 16 NEG 96 6136 2 InfluenzaA NP ALKCKGFHV Naive T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-B*08:01 B2M MHCI -14002 chip0516_572161 6.35 11.53 Chip4 healthy_8 healthy TGTGCCCTAACGTCCTATGGTCAGAATTTTGTCTTT CALTSYGQNFVF TRAV12-2*01 TRAJ26*01 13.0 1200.0 TGTGCCAGCAGCCAAGACTGGAATACCCTGAATAACTATGGCCACACCTTC CASSQDWNTLNNYGHTF TRBV3-1*01 TRBJ1-2*01 27.0 1287.0 CALTSYGQNFVF_CASSQDWNTLNNYGHTF 1 7794 NP30-38 FLU 0.59 72 NP30-38 102 7692 7 InfluenzaA NP RPIIRPATL transitional T cells between effector and memory populations PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-B*08:01 B2M MHCI -14003 chip0516_396207 12.06 8.66 Chip4 healthy_6 healthy TGCATCGTAAGACTTCTGGCTCTAGCAAAACAGGCAGACTCATCTTT CIVRLLAct?SKTGRLIF TRAV26-1*01 TRAJ37*01 32.0 1363.0 CIVRLLAct?SKTGRLIF_ 1 4036 EBV-LMP2-FLY EBV 0.86 355 NEG 100 3936 10 EBV LMP2 FLYALALLL effector memory T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*02:01 B2M MHCI -14004 chip0516_39096 10.64 11.12 Chip4 healthy_6 healthy TGTGCTGTTCTAATGGATAGCAACTATCAGTTAATCTGG CAVLMDSNYQLIW TRAV21*01 TRAJ33*01 29.0 1996.0 TGCGCCAGCAGCGGGGACGGAATGAACACTGAAGCTTTCTTT CASSGDGMNTEAFF TRBV10-2*01 TRBJ1-1*01 2.0 43.0 CAVLMDSNYQLIW_CASSGDGMNTEAFF 20 5095 EBV-LMP2A EBV 0.96 700 EBV-LMP2A 94 5001 9 EBV LMP2A CLGGLLTMV effector memory T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*02:01 B2M MHCI -14005 chip0516_707573 11.71 13.25 Chip4 healthy_6 healthy _ 6746 3297 EBV-BRLF1 EBV 0.86 1264 NEG 125 3172 11 EBV BRLF1 YVLDHLIVV effector T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*02:01 B2M MHCI -14006 chip0516_617449 11.15 10.63 Chip4 healthy_6 healthy TGCGCCAGCAGCGGGGACGGAATGAACACTGAAGCTTTCTTT CASSGDGMNTEAFF TRBV10-2*01 TRBJ1-1*01 3.0 92.0 _CASSGDGMNTEAFF 131 5693 EBV-LMP2A EBV 0.95 700 EBV-LMP2A 105 5588 9 EBV LMP2A CLGGLLTMV effector memory T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*02:01 B2M MHCI -14007 chip0516_428647 12.64 8.35 Chip4 healthy_6 healthy TGTGCTACGGAAGGGGATTCAGGATACAGCACCCTCACCTTT CATEGDSGYSTLTF TRAV17*01 TRAJ11*01 7.0 486.0 CATEGDSGYSTLTF_ 12 4905 EBV-LMP2-FLY EBV 0.93 355 NEG 110 4795 10 EBV LMP2 FLYALALLL effector memory T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*02:01 B2M MHCI -14008 chip0516_384519 -2.72 13.54 Chip4 healthy_10 healthy TGTGCCGCGCTTTCTAACGACTACAAGCTCAGCTTT CAALSNDYKLSF TRAV12-2*01 TRAJ20*01 11.0 891.0 CAALSNDYKLSF_ 1 3196 G6PC2-LTS-10 IGRP 0.82 59 G6PC2-LTS-10 81 3115 1 HomoSapiens G6PC2 LTSLTILQLY Naive T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*01:01 B2M MHCI -14009 chip0516_85338 -1.06 10.21 Chip4 healthy_9 healthy _ 6746 6426 G6PC2-TLH-9 IGRP 0.55 3 G6PC2-TLH-9 93 6333 3 HomoSapiens G6PC2 TLHRLTWSF Naive T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-B*08:01 B2M MHCI -14010 chip0516_571585 5.72 12.19 Chip4 healthy_9 healthy TGTGCCATCAGTGAGTCGATGGCGGGGGGGGCGGCAATTGAGCAGTTCTTC CAISESMAGGAAIEQFF TRBV10-3*01 TRBJ2-1*01 1.0 19.0 _CAISESMAGGAAIEQFF 1 4626 NP140-148 FLU 0.73 102 NP140-148 88 4538 7 InfluenzaA NP HSNLNDATY transitional T cells between effector and memory populations PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*01:01 B2M MHCI -14011 chip0516_170273 11.63 8.1 Chip4 healthy_8 healthy TGCATCCTGCCCCTTGCTGGTGGTACTAGCTATGGAAAGCTGACATTT CILPLAGGTSYGKLTF TRAV26-2*01 TRAJ52*01 49.0 3028.0 CILPLAGGTSYGKLTF_ 55 6647 EBNA3A-193-201 EBV 0.88 1022 EBNA3A-193-201 121 6526 10 EBV EBNA3A FLRGRAYGL effector memory T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-B*08:01 B2M MHCI -14012 chip0516_392017 -4.34 8.94 Chip4 healthy_8 healthy TGTGCAGCAAAGGCCAGTAACCCGTTCTATTTT CAAKASNPFYF TRAV29/DV5*01 TRAJ49*01 9.0 849.0 TGTGCCAGCAGCTTGTCTCCCCGCCATGCAGGAGGCTGCACCCTC CASSLSPRHAGGCTL TRBV5-6*01 TRBJ1-2*01 3.0 134.0 CAAKASNPFYF_CASSLSPRHAGGCTL 1 4928 Nef13-20 HIV 0.86 19 NEG 106 4822 2 HIV-1 Nef WPTVRERM Naive T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-B*08:01 B2M MHCI -14013 chip0516_11742 14.53 12.87 Chip4 healthy_8 healthy TGCATCCTGCCCCTTGCTGGTGGTACTAGCTATGGAAAGCTGACATTT CILPLAGGTSYGKLTF TRAV26-2*01 TRAJ52*01 26.0 1118.0 TGTGCCAGCAGCTCCGGACAGGCCTACGAGCAGTACTTC CASSSGQAYEQYF TRBV7-8*01 TRBJ2-7*01 9.0 503.0 CILPLAGGTSYGKLTF_CASSSGQAYEQYF 40 3229 EBNA3A-193-201 EBV 0.95 1022 EBNA3A-193-201 88 3141 12 EBV EBNA3A FLRGRAYGL effector T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-B*08:01 B2M MHCI -14014 chip0516_126650 11.25 8.9 Chip4 healthy_8 healthy TGCATCCTGCCCCTTGCTGGTGGTACTAGCTATGGAAAGCTGACATTT CILPLAGGTSYGKLTF TRAV26-2*01 TRAJ52*01 11.0 688.0 CILPLAGGTSYGKLTF_ 55 5147 EBNA3A-193-201 EBV 0.54 1022 EBNA3A-193-201 112 5035 10 EBV EBNA3A FLRGRAYGL effector memory T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-B*08:01 B2M MHCI -14015 chip0516_4033 11.87 13.17 Chip4 healthy_6 healthy _ 6746 2633 EBV-BLMF1 EBV 0.86 2531 NEG 101 2532 11 EBV BLMF1 GLCTLVAML effector T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*02:01 B2M MHCI -14016 chip0516_567724 -3.92 8.1 Chip4 healthy_6 healthy TGTGCCGTGTCCCGGGGAGGAGGAAACAAACTCACCTTT CAVSRGGGNKLTF TRAV12-2*01 TRAJ10*01 36.0 2096.0 CAVSRGGGNKLTF_ 1 6653 PGT-178 PGT 0.75 1480 NEG 85 6568 2 HomoSapiens PGT LLAGIGTVPI Naive T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*02:01 B2M MHCI -14017 chip0516_875936 9.57 8.6 Chip4 healthy_6 healthy TGTGCTGTGGCCCTCTCAAGCCAGTCAACCTTT CAVALSSQSTF TRAV8-3*01 TRAJ27*01 3.0 308.0 TGCGCCAGCAGCGGGGACGGAATGAACACTGAAGCTTTCTTT CASSGDGMNTEAFF TRBV10-2*01 TRBJ1-1*01 24.0 1327.0 CAVALSSQSTF_CASSGDGMNTEAFF 1 6804 EBV-LMP2A EBV 0.93 700 EBV-LMP2A 97 6707 8 EBV LMP2A CLGGLLTMV effector memory T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*02:01 B2M MHCI -14018 chip0516_443584 11.33 9.44 Chip4 healthy_6 healthy TGCATCCTGAGAGACAAGACGGGGATGGCTGCTATATGTTGATCTTC CILRDKTgg?DGCYMLIF TRAV26-2*01 TRAJ12*01 24.0 890.0 TGTGCCCGCCGCCCAGGGGGGGGGGGGGGCTACGAGCAGTACTTC CARRPGGGGGYEQYF TRBV4-2*01 TRBJ2-7*01 16.0 286.0 CILRDKTgg?DGCYMLIF_CARRPGGGGGYEQYF 1 5261 EBV-LMP1-2 EBV 1.0 41 NEG 114 5147 9 EBV LMP1 YLQQNWWTL effector memory T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*02:01 B2M MHCI -14019 chip0516_679497 -2.81 8.21 Chip4 healthy_8 healthy TGTGCTATCCGGAACACCGGTAACCAGTTCTATTTT CAIRNTGNQFYF TRAV41*01 TRAJ49*01 58.0 5703.0 TGTGCAGAGAACCAGGGTACCGGTAACCAGTTCTATTTT CAENQGTGNQFYF TRAV13-2*01 TRAJ49*01 41.0 3633.0 0.35 CAIRNTGNQFYF_ 1 7373 GFAP-HLK-8 GFAP 1.0 28 NEG 83 7290 2 HomoSapiens GFAP HLKRNIVV Naive T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-B*08:01 B2M MHCI -14020 chip0516_84215 5.7 10.33 Chip4 healthy_8 healthy TGTGCCAGCTATTCGACTAGCGGGGGCCAAGAGACCCAGTACTTC CASYSTSGGQETQYF TRBV2*01 TRBJ2-5*01 48.0 3085.0 _CASYSTSGGQETQYF 5 6474 NP44-52 FLU 0.59 474 NEG 102 6372 6 InfluenzaA NP CTELKLSDY central memory T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*01:01 B2M MHCI -14021 chip0516_807224 10.39 8.56 Chip4 healthy_6 healthy TGCGCCAGCAGCGGGGACGGAATGAACACTGAAGCTTTCTTT CASSGDGMNTEAFF TRBV10-2*01 TRBJ1-1*01 23.0 867.0 _CASSGDGMNTEAFF 131 5158 EBV-LMP2A EBV 1.0 700 EBV-LMP2A 106 5052 10 EBV LMP2A CLGGLLTMV effector memory T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*02:01 B2M MHCI -14022 chip0516_557030 6.05 12.07 Chip4 healthy_9 healthy TGTGCCGGGCCGGGACTTCAGGGCGGATCTGAAAAGCTGGTCTTT CAGPGLQGGSEKLVF TRAV12-2*01 TRAJ57*01 28.0 1516.0 CAGPGLQGGSEKLVF_ 1 6002 NP30-38 FLU 0.86 72 NP30-38 105 5897 7 InfluenzaA NP RPIIRPATL transitional T cells between effector and memory populations PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-B*08:01 B2M MHCI -14023 chip0516_599000 11.66 11.98 Chip4 healthy_9 healthy _ 6746 2898 BZLF1-190-197 EBV 0.96 2156 BZLF1-190-197 93 2805 10 EBV BZLF1 RAKFKQLL effector memory T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-B*08:01 B2M MHCI -14024 chip0516_520784 10.04 10.19 Chip4 healthy_6 healthy TGTGCTGTGGCCCTCTCAAGCAAATCAACCTTT CAVALSSKSTF TRAV8-3*01 TRAJ27*01 1.0 21.0 TGCGCCAGCAGCGGGGACGGAATGAACACTGAAGCTTTCTTT CASSGDGMNTEAFF TRBV10-2*01 TRBJ1-1*01 1.0 11.0 CAVALSSKSTF_CASSGDGMNTEAFF 50 5312 EBV-LMP2A EBV 0.89 700 EBV-LMP2A 116 5196 9 EBV LMP2A CLGGLLTMV effector memory T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*02:01 B2M MHCI -14025 chip0516_143612 11.07 7.63 Chip4 healthy_6 healthy TGTGCTACGGAAGGGGCTTCAGGATACAGCACCCTCACCTTT CATEGASGYSTLTF TRAV17*01 TRAJ11*01 3.0 40.0 CATEGASGYSTLTF_ 8 6889 EBV-LMP2-FLY EBV 0.75 355 EBV-LMP2-FLY 98 6791 6 EBV LMP2 FLYALALLL central memory T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*02:01 B2M MHCI -14026 chip0516_100065 -2.5 10.13 Chip4 healthy_6 healthy _ 6746 5182 MART1-ALA MART1 0.79 269 MART1-ALA 100 5082 3 HomoSapiens MART1 ALAGIGILTV Naive T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*02:01 B2M MHCI -14027 chip0516_721840 7.85 13.33 Chip4 healthy_9 healthy TGTGCAGAGAATATCGGGTACTCTGGGGCTGGGAGTTACCCACTCACTTTC CAENIGYSGAGSYPLTF TRAV13-2*01 TRAJ28*01 21.0 960.0 CAENIGYSGAGSYPLTF_ 1 4151 EBNA3A-158-166 EBV 0.92 444 EBNA3A-158-166 91 4060 7 EBV EBNA3A QAKWRLQTL transitional T cells between effector and memory populations PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-B*08:01 B2M MHCI -14028 chip0516_330650 6.09 12.8 Chip4 healthy_8 healthy TGTGCCTCGGGGCCATAACCAAGGAGGAAAGCTTATCTTC CASGP*cc??aaGGKLIF TRAV13-1*01 TRAJ23*01 10.0 687.0 CASGP*cc??aaGGKLIF_ 1 6256 NP44-52 FLU 0.8 474 NP44-52 88 6168 7 InfluenzaA NP CTELKLSDY transitional T cells between effector and memory populations PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*01:01 B2M MHCI -14029 chip0516_25957 12.15 8.74 Chip4 healthy_8 healthy TGTGCCGTGAAAGGGGACACCAATGCAGGCAAATCAACCTTT CAVKGDTNAGKSTF TRAV12-2*01 TRAJ27*01 22.0 1226.0 CAVKGDTNAGKSTF_ 7 3541 EBNA3A-193-201 EBV 0.86 1022 EBNA3A-193-201 101 3440 10 EBV EBNA3A FLRGRAYGL effector memory T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-B*08:01 B2M MHCI -14030 chip0516_271006 7.04 13.35 Chip4 healthy_8 healthy TGTGCAGAGAAGGATAGCAACTATCAGTTAATCTGG CAEKDSNYQLIW TRAV13-2*01 TRAJ33*01 6.0 424.0 CAEKDSNYQLIW_ 1 4720 NP30-38 FLU 0.82 72 NP30-38 128 4592 7 InfluenzaA NP RPIIRPATL transitional T cells between effector and memory populations PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-B*08:01 B2M MHCI -14031 chip0516_570284 -4.41 9.43 Chip4 healthy_7 healthy TGTGCCAGCAGTGAGCTTGGTCAGCCCCAGCATTTT CASSELGQPQHF TRBV2*01 TRBJ1-5*01 26.0 2406.0 _CASSELGQPQHF 1 4929 GAG-433-442 HIV 1.0 19 NEG 107 4822 2 HIV-1 GAG FLGKIWPSYK Naive T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*02:01 B2M MHCI -14032 chip0516_692172 13.2 8.18 Chip4 healthy_8 healthy TGTGCCAGCAGTCCCTTAACCGATACGCAGTATTTT CASSPLTDTQYF TRBV27*01 TRBJ2-3*01 30.0 2063.0 _CASSPLTDTQYF 2 2959 BZLF1-190-197 EBV 0.55 2156 BZLF1-190-197 101 2858 10 EBV BZLF1 RAKFKQLL effector memory T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-B*08:01 B2M MHCI -14033 chip0516_642962 10.49 10.24 Chip4 healthy_6 healthy TGCGCCAGCAGCGGGGACGGAATGAACACTGAAGCTTTCTTT CASSGDGMNTEAFF TRBV10-2*01 TRBJ1-1*01 25.0 1939.0 _CASSGDGMNTEAFF 131 6004 EBV-LMP2A EBV 1.0 700 EBV-LMP2A 98 5906 9 EBV LMP2A CLGGLLTMV effector memory T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*02:01 B2M MHCI -14034 chip0516_532214 11.28 13.47 Chip4 healthy_8 healthy TGTGCTGTGACCCTTACCCTCTACTCTGGGGCTGGGAGTTACCAACTCACTTTC CAVTLTLYSGAGSYQLTF TRAV21*01 TRAJ28*01 41.0 2195.0 TGTGCCAGCAGTTTAATGGGGACAGGGGGCTTGAGTGAAAAACTGTTTTTT CASSLMGTGGLSEKLFF TRBV28*01 TRBJ1-4*01 43.0 1934.0 CAVTLTLYSGAGSYQLTF_CASSLMGTGGLSEKLFF 19 3050 EBNA3A-158-166 EBV 0.62 444 NEG 100 2950 11 EBV EBNA3A QAKWRLQTL effector T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-B*08:01 B2M MHCI -14035 chip0516_34608 10.26 11.04 Chip4 healthy_8 healthy TGTGCCAGCAGCTTAGGACAGGCCTACGAGCAGTACTTC CASSLGQAYEQYF TRBV7-8*01 TRBJ2-7*01 3.0 78.0 _CASSLGQAYEQYF 175 6347 EBNA3A-193-201 EBV 0.89 1022 EBNA3A-193-201 111 6236 9 EBV EBNA3A FLRGRAYGL effector memory T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-B*08:01 B2M MHCI -14036 chip0516_881960 10.18 9.82 Chip4 healthy_6 healthy TGCGCCAGCAGCGGGGACGGAATGAACACTGAAGCTTTCTTT CASSGDGMNTEAFF TRBV10-2*01 TRBJ1-1*01 17.0 1128.0 _CASSGDGMNTEAFF 131 5246 EBV-LMP2A EBV 0.91 700 EBV-LMP2A 96 5150 9 EBV LMP2A CLGGLLTMV effector memory T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*02:01 B2M MHCI -14037 chip0516_726906 11.69 12.03 Chip4 healthy_6 healthy _ 6746 3385 EBV-LMP2A EBV 1.0 700 EBV-LMP2A 85 3300 11 EBV LMP2A CLGGLLTMV effector T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*02:01 B2M MHCI -14038 chip0516_438379 -3.69 8.63 Chip4 healthy_8 healthy TGTGCTGTGAGTGAAGTCCAAGCTGCAGGCAACAAGCTAACTTTT CAVSEVQAAGNKLTF TRAV8-4*01 TRAJ17*01 40.0 2002.0 TGTGCCAGCAGGAAAAGGTTCGGAAGCAGTGAAAAACTGTTTTTT CASRKRFGSSEKLFF TRBV27*01 TRBJ1-4*01 15.0 672.0 CAVSEVQAAGNKLTF_CASRKRFGSSEKLFF 1 6287 ZNT8-YAK-9 ZNT8 0.86 59 ZNT8-YAK-9 93 6194 2 HomoSapiens ZNT8 YAKWKLCSA Naive T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-B*08:01 B2M MHCI -14039 chip0516_79241 10.93 7.72 Chip4 healthy_6 healthy _ 6746 6751 EBV-LMP2A EBV 0.93 700 NEG 87 6664 10 EBV LMP2A CLGGLLTMV effector memory T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*02:01 B2M MHCI -14040 chip0516_226512 10.37 10.39 Chip4 healthy_6 healthy _ 6746 5073 EBV-LMP2A EBV 0.97 700 EBV-LMP2A 124 4949 9 EBV LMP2A CLGGLLTMV effector memory T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*02:01 B2M MHCI -14041 chip0516_788130 6.41 9.96 Chip4 healthy_6 healthy _ 6746 7133 EBV-LMP2-FLY EBV 0.81 355 EBV-LMP2-FLY 108 7025 6 EBV LMP2 FLYALALLL central memory T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*02:01 B2M MHCI -14042 chip0516_410197 -3.17 8.53 Chip4 healthy_8 healthy _ 6746 6832 ZNT8-PTE-9 ZNT8 0.89 18 ZNT8-PTE-9 119 6713 2 HomoSapiens ZNT8 PTEKGANEY Naive T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*01:01 B2M MHCI -14043 chip0516_363139 12.0 6.81 Chip4 healthy_6 healthy TGTGCTGTTCTAATGGATAGCAACTATCAGTTAATCTGG CAVLMDSNYQLIW TRAV21*01 TRAJ33*01 25.0 2395.0 CAVLMDSNYQLIW_ 20 6087 EBV-LMP2A EBV 0.89 700 EBV-LMP2A 103 5984 10 EBV LMP2A CLGGLLTMV effector memory T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*02:01 B2M MHCI -14044 chip0516_486675 6.23 11.47 Chip4 healthy_6 healthy _ 6746 6471 EBV-LMP2-FLY EBV 0.86 355 NEG 83 6388 7 EBV LMP2 FLYALALLL transitional T cells between effector and memory populations PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*02:01 B2M MHCI -14045 chip0516_88578 10.9 10.68 Chip4 healthy_6 healthy TGCGCCAGCAGCGGGGACGGAATGAACACTGAAGCTTTCTTT CASSGDGMNTEAFF TRBV10-2*01 TRBJ1-1*01 1.0 26.0 _CASSGDGMNTEAFF 131 5249 EBV-LMP2A EBV 0.92 700 EBV-LMP2A 86 5163 9 EBV LMP2A CLGGLLTMV effector memory T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*02:01 B2M MHCI -14046 chip0516_808375 11.02 9.63 Chip4 healthy_6 healthy TGTGCTGTGGCCCTCTCAAGCAAATCAACCTTT CAVALSSKSTF TRAV8-3*01 TRAJ27*01 13.0 1162.0 CAVALSSKSTF_ 58 6018 EBV-LMP2A EBV 0.95 700 EBV-LMP2A 89 5929 9 EBV LMP2A CLGGLLTMV effector memory T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*02:01 B2M MHCI -14047 chip0516_713154 10.28 9.97 Chip4 healthy_6 healthy _ 6746 5525 EBV-LMP2A EBV 0.96 700 EBV-LMP2A 106 5419 9 EBV LMP2A CLGGLLTMV effector memory T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*02:01 B2M MHCI -14048 chip0516_154269 -0.48 8.78 Chip4 healthy_6 healthy TGTGCTGTGTGAGACAATGACATGCGCTTT CAV*DNDMRF TRAV21*01 TRAJ43*01 18.0 1486.0 CAV*DNDMRF_ 1 9720 PGT-178 PGT 0.91 1480 PGT-178 103 9617 4 HomoSapiens PGT LLAGIGTVPI Naive T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*02:01 B2M MHCI -14049 chip0516_565622 10.39 9.74 Chip4 healthy_8 healthy _ 6746 4781 BZLF1-190-197 EBV 0.95 2156 BZLF1-190-197 116 4665 9 EBV BZLF1 RAKFKQLL effector memory T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-B*08:01 B2M MHCI -14050 chip0516_542936 15.51 10.19 Chip4 healthy_9 healthy TGTGCTGTGGGTGAGGACAGACTCATGTTT CAVGEDRLMF TRAV8-3*01 TRAJ31*01 1.0 52.0 CAVGEDRLMF_ 3 3211 BZLF1-190-197 EBV 0.98 2156 BZLF1-190-197 111 3100 12 EBV BZLF1 RAKFKQLL effector T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-B*08:01 B2M MHCI -14051 chip0516_181373 9.91 10.13 Chip4 healthy_6 healthy TGCGCCAGCAGCGGGGACGGAATGAACACTGAAGCTTTCTTT CASSGDGMNTEAFF TRBV10-2*01 TRBJ1-1*01 6.0 273.0 _CASSGDGMNTEAFF 131 6085 EBV-LMP2A EBV 1.0 700 EBV-LMP2A 111 5974 9 EBV LMP2A CLGGLLTMV effector memory T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*02:01 B2M MHCI -14052 chip0516_375911 4.96 9.33 Chip4 healthy_6 healthy TGTGCTCGTGGGTCGGAGGGCTGTGGTCAGAGTTTTGGCTTT CARGSEGCGQSFGF TRAV36/DV7*01 TRAJ26*01 3.0 273.0 TGTGCCAGCAGCCCCGAAAGCTCCTACAATGAGCAGTTCTTC CASSPESSYNEQFF TRBV7-6*01 TRBJ2-1*01 8.0 650.0 CARGSEGCGQSFGF_CASSPESSYNEQFF 1 5361 EBV-LMP1-1 EBV 0.94 237 EBV-LMP1-1 96 5265 6 EBV LMP1 YLLEMLWRL central memory T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*02:01 B2M MHCI -14053 chip0516_118473 11.67 8.59 Chip4 healthy_8 healthy _ 6746 4696 BZLF1-190-197 EBV 0.91 2156 BZLF1-190-197 123 4573 10 EBV BZLF1 RAKFKQLL effector memory T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-B*08:01 B2M MHCI -14054 chip0516_634788 6.31 9.99 Chip4 healthy_8 healthy TGCATCCTTCCGCTTTCTTGTGGTCCTTGCTACGATAAGCTGCCATTT CILPLSCGPCYDKLPF TRAV26-2*01 TRAJ52*01 2.0 86.0 TGTGCCAGCAGCTCCGGACAGGCCTACGAGCAGTACTTC CASSSGQAYEQYF TRBV7-8*01 TRBJ2-7*01 9.0 879.0 CILPLSCGPCYDKLPF_CASSSGQAYEQYF 1 5752 EBNA3A-193-201 EBV 0.85 1022 EBNA3A-193-201 105 5647 6 EBV EBNA3A FLRGRAYGL central memory T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-B*08:01 B2M MHCI -14055 chip0516_155089 8.66 10.49 Chip4 healthy_6 healthy _ 6746 8173 EBV-LMP2A EBV 0.97 700 EBV-LMP2A 87 8086 8 EBV LMP2A CLGGLLTMV effector memory T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*02:01 B2M MHCI -14056 chip0516_798281 11.36 7.15 Chip4 healthy_6 healthy _ 6746 6097 EBV-LMP2A EBV 0.92 700 EBV-LMP2A 99 5998 10 EBV LMP2A CLGGLLTMV effector memory T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*02:01 B2M MHCI -14057 chip0516_782030 11.08 10.41 Chip4 healthy_6 healthy TGTGCTGTGGCCCTCTCAAGCAAATCAACCTTT CAVALSSKSTF TRAV8-3*01 TRAJ27*01 7.0 890.0 CAVALSSKSTF_ 58 4867 EBV-LMP2A EBV 0.89 700 EBV-LMP2A 98 4769 9 EBV LMP2A CLGGLLTMV effector memory T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*02:01 B2M MHCI -14058 chip0516_417146 14.12 10.81 Chip4 healthy_6 healthy TGTGCAGAGGACCATGCACTCAACTTC CAEDHALNF TRAV23/DV6*01,TRAV9-2*01 TRAJ41*01 2.0 9.0 TGTGCCAGCAGCTCGGGACAGGGGGACAATGAGCAGTTCTTC CASSSGQGDNEQFF TRBV11-2*01 TRBJ2-1*01 1.0 17.0 CAEDHALNF_CASSSGQGDNEQFF 6 3917 EBV-BLMF1 EBV 0.91 2531 NEG 119 3798 12 EBV BLMF1 GLCTLVAML effector T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*02:01 B2M MHCI -14059 chip0516_558861 -2.15 8.07 Chip4 healthy_9 healthy TGCGCCAGCAACTTGGCTGGGTTCACTGAAGCTTTCTTT CASNLAGFTEAFF TRBV5-1*01 TRBJ1-1*01 28.0 1599.0 _CASNLAGFTEAFF 1 6367 IAPP-STN-9 IAPP 0.77 48 IAPP-STN-9 89 6278 2 HomoSapiens IAPP STNVGSNTY Naive T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*01:01 B2M MHCI -14060 chip0516_62961 -3.23 10.29 Chip4 healthy_6 healthy _ 6746 6932 PGT-178 PGT 0.93 1480 PGT-178 83 6849 2 HomoSapiens PGT LLAGIGTVPI Naive T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*02:01 B2M MHCI -14061 chip0516_748768 6.34 11.63 Chip4 healthy_8 healthy _ 6746 6221 NP30-38 FLU 0.78 72 NP30-38 96 6125 7 InfluenzaA NP RPIIRPATL transitional T cells between effector and memory populations PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-B*08:01 B2M MHCI -14062 chip0516_639436 15.19 10.85 Chip4 healthy_8 healthy TGTGCCAGCAGCTCCGGACAGGCCTACGAGCAGTACTTC CASSSGQAYEQYF TRBV7-8*01 TRBJ2-7*01 33.0 2131.0 _CASSSGQAYEQYF 49 4363 EBNA3A-193-201 EBV 0.95 1022 EBNA3A-193-201 99 4264 12 EBV EBNA3A FLRGRAYGL effector T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-B*08:01 B2M MHCI -14063 chip0516_542394 8.81 13.99 Chip4 healthy_7 healthy TGTGCTGTGGAGGATCGAGTGAATTATGGAGGAAGCCAAGGAAATCTCATCTTT CAVEDRVNYGGSQGNLIF TRAV2*01 TRAJ42*01 155.0 3487.0 TGTGCCAGTAGTTCCAGGGCCTCCTACGAGCAGTACTTC CASSSRASYEQYF TRBV19*01 TRBJ2-7*01 23.0 2167.0 CAVEDRVNYGGSQGNLIF_CASSSRASYEQYF 1 2510 M1 FLU 1.0 1250 NEG 84 2426 11 InfluenzaA M1 GILGFVFTL effector T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*02:01 B2M MHCI -14064 chip0516_152730 5.19 11.42 Chip4 healthy_6 healthy _ 6746 7358 EBV-LMP1-1 EBV 1.0 237 EBV-LMP1-1 111 7247 6 EBV LMP1 YLLEMLWRL central memory T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*02:01 B2M MHCI -14065 chip0516_682479 10.38 8.98 Chip4 healthy_9 healthy _ 6746 4190 BZLF1-190-197 EBV 0.96 2156 BZLF1-190-197 100 4090 10 EBV BZLF1 RAKFKQLL effector memory T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-B*08:01 B2M MHCI -14066 chip0516_328489 -3.78 11.86 Chip4 healthy_7 healthy TGTGTGCCGAGGGGAAGCAGTGCTTCCAAGATAATCTTT CVPRGSSASKIIF TRAV12-1*01 TRAJ3*01 54.0 3653.0 TGCAGTGCTCTGGGACCATCGCTCCCTCAAGGGGAGCAGTTCTTC CSALGPSLPQGEQFF TRBV20-1*01 TRBJ2-1*01 26.0 1744.0 CVPRGSSASKIIF_CSALGPSLPQGEQFF 1 4477 HCVNS4B-1807-1816 HCV 0.9 74 HCVNS4B-1807-1816 89 4388 1 HCV NS4B LLFNILGGWV Naive T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*02:01 B2M MHCI -14067 chip0516_876792 -3.13 8.91 Chip4 healthy_6 healthy TGTGCAATGAGCAGATCTTATAACACCGACAAGCTCATCTTT CAMSRSYNTDKLIF TRAV12-3*01 TRAJ34*01 47.0 2936.0 CAMSRSYNTDKLIF_ 1 6912 PGT-178 PGT 0.95 1480 PGT-178 95 6817 2 HomoSapiens PGT LLAGIGTVPI Naive T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*02:01 B2M MHCI -14068 chip0516_871139 11.42 11.76 Chip4 healthy_6 healthy _ 6746 4146 EBV-LMP2A EBV 0.79 700 NEG 102 4044 9 EBV LMP2A CLGGLLTMV effector memory T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*02:01 B2M MHCI -14069 chip0516_422035 -1.52 12.11 Chip4 healthy_8 healthy _ 6746 4432 BZLF1-190-197 EBV 0.76 2156 BZLF1-190-197 81 4351 1 EBV BZLF1 RAKFKQLL Naive T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-B*08:01 B2M MHCI -14070 chip0516_807894 12.52 7.76 Chip4 healthy_6 healthy TGTGCTACGGAAGGGGATTCAGGATACAGCACCCTCACCTTT CATEGDSGYSTLTF TRAV17*01 TRAJ11*01 33.0 1728.0 CATEGDSGYSTLTF_ 12 3942 EBV-LMP2-FLY EBV 0.94 355 EBV-LMP2-FLY 108 3834 10 EBV LMP2 FLYALALLL effector memory T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*02:01 B2M MHCI -14071 chip0516_375422 7.14 13.3 Chip4 healthy_8 healthy TGTGCCAGCAGCTTAGGAACAGGGAATGACTATGGCTACACCTTC CASSLGTGNDYGYTF TRBV7-6*01 TRBJ1-2*01 9.0 442.0 _CASSLGTGNDYGYTF 2 4570 NP44-52 FLU 0.99 474 NP44-52 103 4467 7 InfluenzaA NP CTELKLSDY transitional T cells between effector and memory populations PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*01:01 B2M MHCI -14072 chip0516_714937 8.8 13.76 Chip4 healthy_8 healthy _ 6746 2625 BZLF1-190-197 EBV 0.91 2156 BZLF1-190-197 103 2522 11 EBV BZLF1 RAKFKQLL effector T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-B*08:01 B2M MHCI -14073 chip0516_713305 13.27 8.69 Chip4 healthy_9 healthy TGCGCCAGCAGTACCTATGTGGGTCACTACGAGCAGTACTTC CASSTYVGHYEQYF TRBV5-1*01 TRBJ2-7*01 5.0 139.0 _CASSTYVGHYEQYF 1 3502 BZLF1-190-197 EBV 0.87 2156 BZLF1-190-197 78 3424 10 EBV BZLF1 RAKFKQLL effector memory T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-B*08:01 B2M MHCI -14074 chip0516_480863 0.01 8.29 Chip4 healthy_8 healthy TGTGCCATCGGGACTAACTATGGCTACACCTTC CAIGTNYGYTF TRBV7-9*01 TRBJ1-2*01 8.0 910.0 _CAIGTNYGYTF 1 7591 EBNA3A-158-166 EBV 0.83 444 EBNA3A-158-166 95 7496 4 EBV EBNA3A QAKWRLQTL Naive T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-B*08:01 B2M MHCI -14075 chip0516_119605 10.91 8.9 Chip4 healthy_6 healthy _ 6746 5933 EBV-LMP2A EBV 0.91 700 EBV-LMP2A 101 5832 10 EBV LMP2A CLGGLLTMV effector memory T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*02:01 B2M MHCI -14076 chip0516_746785 11.61 9.44 Chip4 healthy_8 healthy TGCATCCTGCCCCCTGCTGGTGGTACTAGCTATGGAAAGCTGACATTT CILPPAGGTSYGKLTF TRAV26-2*01 TRAJ52*01 1.0 33.0 CILPPAGGTSYGKLTF_ 2 4916 EBNA3A-193-201 EBV 0.91 1022 EBNA3A-193-201 96 4820 10 EBV EBNA3A FLRGRAYGL effector memory T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-B*08:01 B2M MHCI -14077 chip0516_633211 -1.17 9.13 Chip4 healthy_7 healthy TGTGCCAGCAGCCCCGGGGACACAGATACGCAGTATTTT CASSPGDTDTQYF TRBV4-2*01 TRBJ2-3*01 1.0 35.0 _CASSPGDTDTQYF 1 4962 GAG-77-86 HIV 0.86 15 GAG-77-86 94 4868 3 HIV-1 GAG SLYNTVATLY Naive T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*02:01 B2M MHCI -14078 chip0516_607287 -1.46 8.04 Chip4 healthy_9 healthy TGTGCAATGACTCCTATGAACACCGGTAACCAGTTCTATTTT CAMTPMNTGNQFYF TRAV14/DV4*01 TRAJ49*01 12.0 689.0 TGTGCCAGCCGCTCCACGAGACAACCCCAATCAGCCCCAGCATTTT CASRSTRca??acPNQPQHF TRBV11-3*01 TRBJ1-5*01 19.0 819.0 CAMTPMNTGNQFYF_CASRSTRca??acPNQPQHF 1 6828 BZLF1-190-197 EBV 0.69 2156 BZLF1-190-197 94 6734 3 EBV BZLF1 RAKFKQLL Naive T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-B*08:01 B2M MHCI -14079 chip0516_97602 10.61 11.06 Chip4 healthy_6 healthy _ 6746 5048 EBV-LMP2A EBV 0.94 700 EBV-LMP2A 114 4934 9 EBV LMP2A CLGGLLTMV effector memory T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*02:01 B2M MHCI -14080 chip0516_779102 -1.97 9.47 Chip4 healthy_7 healthy TGTGCCAGCAGCTCAAGACTACATCAGTGGGGTGAGCAGTTCTTC CASSSRLHQWGEQFF TRBV13*01 TRBJ2-1*01 1.0 30.0 _CASSSRLHQWGEQFF 1 6268 ROTA-VP3 ROTA 0.76 41 ROTA-VP3 92 6176 3 RotavirusA VP3 YLLPGWKL Naive T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*02:01 B2M MHCI -14081 chip0516_420647 11.57 8.19 Chip4 healthy_8 healthy TGCATCCTGCCCCTTGCTGGTGGTACTAGCTATGGAAAGCTGACATTT CILPLAGGTSYGKLTF TRAV26-2*01 TRAJ52*01 26.0 1622.0 TGTGCCAGCAGCTTAGGACAGGCCTACGAGCAGTACTTC CASSLGQAYEQYF TRBV7-8*01 TRBJ2-7*01 20.0 1366.0 CILPLAGGTSYGKLTF_CASSLGQAYEQYF 308 6043 EBNA3A-193-201 EBV 0.7 1022 EBNA3A-193-201 94 5949 10 EBV EBNA3A FLRGRAYGL effector memory T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-B*08:01 B2M MHCI -14082 chip0516_140452 -3.66 11.42 Chip4 healthy_8 healthy TGAGCTCGGAAAGAACCCCAATGCAGGCTTATCCCCCCTT *ARKEPca??atAGLSPL TRAV19*01 TRAJ27*01 7.0 601.0 TGTGCCAGCAGTTTCCGGACAGGGATCACCGGGGAGCTGTTTTTT CASSFRTGITGELFF TRBV13*01 TRBJ2-2*01 1.0 25.0 *ARKEPca??atAGLSPL_CASSFRTGITGELFF 1 4970 EBNA3A-158-166 EBV 0.66 444 EBNA3A-158-166 102 4868 1 EBV EBNA3A QAKWRLQTL Naive T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-B*08:01 B2M MHCI -14083 chip0516_111958 12.05 7.08 Chip4 healthy_8 healthy _ 6746 4859 EBNA3A-193-201 EBV 0.58 1022 EBNA3A-193-201 97 4762 10 EBV EBNA3A FLRGRAYGL effector memory T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-B*08:01 B2M MHCI -14084 chip0516_469490 11.22 12.1 Chip4 healthy_6 healthy TGCGCCAGCAGCGGGGACGGAATGAACACTGAAGCTTTCTTT CASSGDGMNTEAFF TRBV10-2*01 TRBJ1-1*01 2.0 57.0 _CASSGDGMNTEAFF 131 3701 EBV-LMP2A EBV 0.94 700 EBV-LMP2A 86 3615 9 EBV LMP2A CLGGLLTMV effector memory T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*02:01 B2M MHCI -14085 chip0516_448404 5.46 11.88 Chip4 healthy_6 healthy _ 6746 5589 POL-132-140 HIV 0.89 37 NEG 105 5484 7 HIV-1 POL LVGPTPVNI transitional T cells between effector and memory populations PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*02:01 B2M MHCI -14086 chip0516_166388 11.68 10.74 Chip4 healthy_6 healthy TGTGCCAGCAGTCCGGGAGGGGGGGAAGAGACCCAGTACTTC CASSPGGGEETQYF TRBV25-1*01 TRBJ2-5*01 1.0 25.0 _CASSPGGGEETQYF 1 4781 EBV-LMP2A EBV 1.0 700 NEG 87 4694 9 EBV LMP2A CLGGLLTMV effector memory T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*02:01 B2M MHCI -14087 chip0516_130238 12.23 7.56 Chip4 healthy_9 healthy _ 6746 5156 BZLF1-190-197 EBV 0.9 2156 BZLF1-190-197 107 5049 10 EBV BZLF1 RAKFKQLL effector memory T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-B*08:01 B2M MHCI -14088 chip0516_694326 12.08 8.36 Chip4 healthy_8 healthy TGCATCCTGCCCCTTGCTGGTGGTACTAGCTATGGAAAGCTGACATTT CILPLAGGTSYGKLTF TRAV26-2*01 TRAJ52*01 31.0 1364.0 TGTGCCAGCAGCTTAAGACAGGCCTACGAGCAGTACTTC CASSLRQAYEQYF TRBV7-8*01 TRBJ2-7*01 3.0 198.0 CILPLAGGTSYGKLTF_CASSLRQAYEQYF 1 4155 EBNA3A-193-201 EBV 0.89 1022 EBNA3A-193-201 93 4062 10 EBV EBNA3A FLRGRAYGL effector memory T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-B*08:01 B2M MHCI -14089 chip0516_555486 10.82 10.19 Chip4 healthy_6 healthy _ 6746 6300 EBV-LMP2A EBV 0.86 700 EBV-LMP2A 92 6208 9 EBV LMP2A CLGGLLTMV effector memory T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*02:01 B2M MHCI -14090 chip0516_318735 -0.65 10.57 Chip4 healthy_8 healthy TGTGCTCTGAGTGAGCCTCTCTTTAATACTGGAGCCAATAGTAAGCTGACATTT CALSEPLFNTGANSKLTF TRAV19*01 TRAJ56*01 4.0 71.0 CALSEPLFNTGANSKLTF_ 1 6552 INS-LWM-8 INS 0.72 11 NEG 94 6458 3 HomoSapiens INS LWMRLLPL Naive T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-B*08:01 B2M MHCI -14091 chip0516_62141 11.0 10.22 Chip4 healthy_8 healthy _ 6746 3614 EBNA3A-193-201 EBV 0.92 1022 EBNA3A-193-201 91 3523 9 EBV EBNA3A FLRGRAYGL effector memory T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-B*08:01 B2M MHCI -14092 chip0516_610828 -3.28 10.73 Chip4 healthy_8 healthy TGTGCTGCCCCCCGCTTAACTGGGGCAAACAACCTCTTCTTT CAAPRLTGANNLFF TRAV36/DV7*01 TRAJ36*01 28.0 2071.0 CAAPRLTGANNLFF_ 1 5057 INS-SLQ-8 INS 0.88 2 NEG 88 4969 3 HomoSapiens INS SLQKRGIV Naive T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-B*08:01 B2M MHCI -14093 chip0516_114765 8.04 10.26 Chip4 healthy_6 healthy TGTGCAATGAGCGCGGCTGGAGCCAATAGTAAGCTGACATTT CAMSAAGANSKLTF TRAV12-3*01 TRAJ56*01 24.0 1233.0 TGTGCCAGCAGCCCTCCCTACAATGAGCAGTTCTTC CASSPPYNEQFF TRBV7-8*01 TRBJ2-1*01 7.0 464.0 CAMSAAGANSKLTF_CASSPPYNEQFF 4 7089 ZNT8-115-123 ZNT8 0.95 74 ZNT8-115-123 108 6981 8 HomoSapiens ZNT8 LLSLFSLWL effector memory T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*02:01 B2M MHCI -14094 chip0516_49364 10.59 10.64 Chip4 healthy_6 healthy TGCGCCAGCAGCGGGGACGGAATGAACACTGAAGCTTTCTTT CASSGDGMNTEAFF TRBV10-2*01 TRBJ1-1*01 1.0 14.0 _CASSGDGMNTEAFF 131 5330 EBV-LMP2A EBV 0.97 700 EBV-LMP2A 98 5232 9 EBV LMP2A CLGGLLTMV effector memory T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*02:01 B2M MHCI -14095 chip0516_247629 12.31 8.69 Chip4 healthy_6 healthy TGTGCCAGCAGTTGTGCATTCCCGCGAGCAGGACTTC CASSCA??tSREQDF TRBV6-1*01 TRBJ2-7*01 3.0 181.0 _CASSCA??tSREQDF 1 3889 EBV-LMP2A EBV 1.0 700 EBV-LMP2A 97 3792 10 EBV LMP2A CLGGLLTMV effector memory T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*02:01 B2M MHCI -14096 chip0516_751110 6.94 12.79 Chip4 healthy_7 healthy TGTGTGTCCTCGATAGGCTTT CVSSIGF TRAV12-1*01 TRAJ14*01 3.0 7.0 TGTGCCAGCTCACCAGTCAACACTGAAGCTTTCTTT CASSPVNTEAFF TRBV18*01 TRBJ1-1*01 5.0 222.0 CVSSIGF_CASSPVNTEAFF 1 4551 PGT-178 PGT 0.41 1480 NEG 115 4436 7 HomoSapiens PGT LLAGIGTVPI transitional T cells between effector and memory populations PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*02:01 B2M MHCI -14097 chip0516_599997 -4.19 10.31 Chip4 healthy_7 healthy TGTGCTGTGGGTGCGCGGTTTTCAGATGGCCAGAAGCTGCTCTTT CAVGARFSDGQKLLF TRAV8-3*01 TRAJ16*01 14.0 735.0 TGCAGTGCACGAGGGACAGGGGAAGGGGCCAACGTCCTGACTTTC CSARGTGEGANVLTF TRBV20-1*01 TRBJ2-6*01 15.0 1061.0 CAVGARFSDGQKLLF_CSARGTGEGANVLTF 1 5089 CVB3-P3A CVB 0.54 77 NEG 90 4999 2 CoxsackievirusB P3A GIIYIIYKL Naive T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*02:01 B2M MHCI -14098 chip0516_88857 9.44 9.93 Chip4 healthy_6 healthy TGTGCCAGCAGCCAAAGCCCCGGTGGTACGCAGTATTTT CASSQSPGGTQYF TRBV14*01 TRBJ2-3*01 12.0 829.0 _CASSQSPGGTQYF 94 4210 EBV-BLMF1 EBV 0.83 2531 NEG 106 4104 8 EBV BLMF1 GLCTLVAML effector memory T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*02:01 B2M MHCI -14099 chip0516_186976 5.61 8.99 Chip4 healthy_6 healthy TGCGCCAGCAGCGGGGACGGAATGAACACTGAAGCTTTCTTT CASSGDGMNTEAFF TRBV10-2*01 TRBJ1-1*01 7.0 443.0 _CASSGDGMNTEAFF 131 9116 EBV-LMP2A EBV 0.94 700 EBV-LMP2A 98 9018 6 EBV LMP2A CLGGLLTMV central memory T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*02:01 B2M MHCI -14100 chip0516_489906 11.17 11.86 Chip4 healthy_6 healthy TGTGCTGTGGCCCTCTCAAGCAAATCAACCTTT CAVALSSKSTF TRAV8-3*01 TRAJ27*01 8.0 637.0 TGCGCCAGCAGCGGGGACGGAATGAACACTGAAGCTTTCTTT CASSGDGMNTEAFF TRBV10-2*01 TRBJ1-1*01 1.0 23.0 CAVALSSKSTF_CASSGDGMNTEAFF 50 3750 EBV-LMP2A EBV 0.85 700 NEG 92 3658 9 EBV LMP2A CLGGLLTMV effector memory T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*02:01 B2M MHCI -14101 chip0516_285470 12.45 8.26 Chip4 healthy_9 healthy TGTGCCAGCAGCTTTTTAGCGGGAGAGGGGGTGGGGGAGCAGTTCTTC CASSFLAGEGVGEQFF TRBV7-6*01 TRBJ2-1*01 9.0 481.0 _CASSFLAGEGVGEQFF 1 2911 BZLF1-190-197 EBV 0.65 2156 BZLF1-190-197 97 2814 10 EBV BZLF1 RAKFKQLL effector memory T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-B*08:01 B2M MHCI -14102 chip0516_217334 12.63 8.31 Chip4 healthy_6 healthy _ 6746 3832 EBV-LMP2A EBV 1.0 700 NEG 105 3727 10 EBV LMP2A CLGGLLTMV effector memory T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*02:01 B2M MHCI -14103 chip0516_824197 5.57 13.09 Chip4 healthy_6 healthy TGTGCCAGTAGTTCACGGTCCTTCTACGAGCAGTACTTC CASSSRSFYEQYF TRBV19*01 TRBJ2-7*01 4.0 293.0 _CASSSRSFYEQYF 1 6647 M1 FLU 0.98 1250 M1 98 6549 7 InfluenzaA M1 GILGFVFTL transitional T cells between effector and memory populations PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*02:01 B2M MHCI -14104 chip0516_274720 10.69 7.68 Chip4 healthy_6 healthy TGCGCCAGCAGCGGGGACGGAATGAACACTGAAGCTTTCTTT CASSGDGMNTEAFF TRBV10-2*01 TRBJ1-1*01 7.0 695.0 _CASSGDGMNTEAFF 131 6559 EBV-LMP2A EBV 0.95 700 EBV-LMP2A 104 6455 6 EBV LMP2A CLGGLLTMV central memory T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*02:01 B2M MHCI -14105 chip0516_568751 -4.27 9.31 Chip4 healthy_7 healthy _ 6746 5341 PGT-178 PGT 0.52 1480 PGT-178 96 5245 2 HomoSapiens PGT LLAGIGTVPI Naive T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*02:01 B2M MHCI -14106 chip0516_200935 5.99 12.71 Chip4 healthy_7 healthy TGTGCCAGTAGTATAAGGTCGGCTTACGAGCAGTACTTC CASSIRSAYEQYF TRBV19*01 TRBJ2-7*01 32.0 2975.0 _CASSIRSAYEQYF 11 4966 M1 FLU 0.88 1250 M1 79 4887 7 InfluenzaA M1 GILGFVFTL transitional T cells between effector and memory populations PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*02:01 B2M MHCI -14107 chip0516_811645 5.88 10.1 Chip4 healthy_8 healthy TGCATCCTGCCCCTTGCTGGTGGTACTAGCTATGGAAAGCTGACATTT CILPLAGGTSYGKLTF TRAV26-2*01 TRAJ52*01 28.0 1476.0 TGTGCCAGCAGCTTAGGACAGGCCTACGAGCAGTACTTC CASSLGQAYEQYF TRBV7-8*01 TRBJ2-7*01 15.0 746.0 CILPLAGGTSYGKLTF_CASSLGQAYEQYF 308 5079 EBNA3A-193-201 EBV 0.97 1022 EBNA3A-193-201 117 4962 6 EBV EBNA3A FLRGRAYGL central memory T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-B*08:01 B2M MHCI -14108 chip0516_305323 -2.52 7.52 Chip4 healthy_6 healthy TGTGCCGTTGCGATAGGCTTT CAVAIGF TRAV12-2*01 TRAJ34*01 7.0 30.0 CAVAIGF_ 1 7210 MART1-ALA MART1 0.66 269 MART1-ALA 103 7107 2 HomoSapiens MART1 ALAGIGILTV Naive T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*02:01 B2M MHCI -14109 chip0516_157155 -1.66 10.26 Chip4 healthy_8 healthy TGTGCTCTGAGTGAGTCTAGGGCCGGCACTGCCAGTAAACTCACCTTT CALSESRAGTASKLTF TRAV19*01 TRAJ44*01 38.0 1782.0 CALSESRAGTASKLTF_ 1 3586 ZNT8-VTD-9 ZNT8 0.59 65 NEG 85 3501 4 HomoSapiens ZNT8 VTDAAHLLI Naive T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*01:01 B2M MHCI -14110 chip0516_145617 11.64 8.13 Chip4 healthy_8 healthy TGTGCCGTGAAGACGGACACCAATGCAGGCAAATCAACCTTT CAVKTDTNAGKSTF TRAV12-2*01 TRAJ27*01 29.0 2220.0 CAVKTDTNAGKSTF_ 20 5174 EBNA3A-193-201 EBV 0.72 1022 EBNA3A-193-201 109 5065 10 EBV EBNA3A FLRGRAYGL effector memory T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-B*08:01 B2M MHCI -14111 chip0516_542577 -2.35 10.44 Chip4 healthy_9 healthy TGCAGTGCTAGGGGCTCAGGGGCATGGGATGGCTACACCTTC CSARGSGAWDGYTF TRBV20-1*01 TRBJ1-2*01 3.0 145.0 _CSARGSGAWDGYTF 1 5311 Nef90-97 HIV 0.52 8 NEG 109 5202 3 HIV-1 Nef FLKEKGGL Naive T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-B*08:01 B2M MHCI -14112 chip0516_440414 11.03 10.13 Chip4 healthy_6 healthy TGTGCTGTTCTAATGGATAGCAACTATCAGTTAATCTGG CAVLMDSNYQLIW TRAV21*01 TRAJ33*01 1.0 66.0 TGCGCCAGCAGCGAGGACGGAATGAACACTGAAGCTCTCTTT CASSEDGMNTEALF TRBV10-2*01 TRBJ1-1*01 8.0 870.0 CAVLMDSNYQLIW_CASSEDGMNTEALF 1 5537 EBV-LMP2A EBV 0.98 700 EBV-LMP2A 112 5425 9 EBV LMP2A CLGGLLTMV effector memory T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*02:01 B2M MHCI -14113 chip0516_138533 10.77 10.27 Chip4 healthy_6 healthy TGTGCTGTGGCCCTCTCAAGCAAATCAACCTTT CAVALSSKSTF TRAV8-3*01 TRAJ27*01 2.0 332.0 TGCGCCAGCAGCGGGGACGGAATGAACACTGAAGCTTTCTTT CASSGDGMNTEAFF TRBV10-2*01 TRBJ1-1*01 70.0 3448.0 CAVALSSKSTF_CASSGDGMNTEAFF 50 5932 EBV-LMP2A EBV 0.95 700 EBV-LMP2A 98 5834 9 EBV LMP2A CLGGLLTMV effector memory T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*02:01 B2M MHCI -14114 chip0516_494143 13.34 13.64 Chip4 healthy_8 healthy TGCATCCTGCCCCTTGCTGGTGGTACTAGCTATGGAAAGCTGACATTT CILPLAGGTSYGKLTF TRAV26-2*01 TRAJ52*01 32.0 1961.0 TGTGCCAGCAGCTTAGGACAGGCCTACGAGCAGTACTTC CASSLGQAYEQYF TRBV7-8*01 TRBJ2-7*01 20.0 1690.0 CILPLAGGTSYGKLTF_CASSLGQAYEQYF 308 1327 EBNA3A-193-201 EBV 1.0 1022 EBNA3A-193-201 96 1231 11 EBV EBNA3A FLRGRAYGL effector T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-B*08:01 B2M MHCI -14115 chip0516_124125 5.83 12.21 Chip4 healthy_8 healthy TGTGCCAGCAGCTCCGGACAGGCCTACGAGCAGTACTTC CASSSGQAYEQYF TRBV7-8*01 TRBJ2-7*01 24.0 1576.0 _CASSSGQAYEQYF 49 6989 EBNA3A-193-201 EBV 0.89 1022 EBNA3A-193-201 97 6892 7 EBV EBNA3A FLRGRAYGL transitional T cells between effector and memory populations PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-B*08:01 B2M MHCI -14116 chip0516_66556 5.5 9.82 Chip4 healthy_6 healthy TGCGCCAGCAGCGGGGACGGAATGAACACTGAAGCTTTCTTT CASSGDGMNTEAFF TRBV10-2*01 TRBJ1-1*01 23.0 1321.0 _CASSGDGMNTEAFF 131 6080 EBV-LMP2A EBV 0.97 700 EBV-LMP2A 92 5988 6 EBV LMP2A CLGGLLTMV central memory T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*02:01 B2M MHCI -14117 chip0516_439561 -4.11 10.52 Chip4 healthy_6 healthy TGTGCCGGTTTTACTGGAGGCTTCAAAACTATCTTT CAGFTGGFKTIF TRAV12-2*01 TRAJ9*01 12.0 900.0 TGTGCCAGCCGCCTCGGGGATAATACGCAGTATTTT CASRLGDNTQYF TRBV3-1*01 TRBJ2-3*01 3.0 132.0 CAGFTGGFKTIF_CASRLGDNTQYF 1 5049 MART1-ALA MART1 0.71 269 NEG 91 4958 2 HomoSapiens MART1 ALAGIGILTV Naive T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*02:01 B2M MHCI -14118 chip0516_708245 -3.54 10.71 Chip4 healthy_8 healthy TGTGCAGAGAGGCAAAGAGCGGGATACAGCACCCTCACCTTT CAERQRAGYSTLTF TRAV13-2*01 TRAJ11*01 35.0 2640.0 CAERQRAGYSTLTF_ 1 4915 NP44-52 FLU 0.64 474 NP44-52 111 4804 1 InfluenzaA NP CTELKLSDY Naive T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*01:01 B2M MHCI -14119 chip0516_7198 11.86 6.91 Chip4 healthy_8 healthy TGCATCCTGCCCCTTGCTGGTGGTACTAGCTATGGAAAGCTGACATTT CILPLAGGTSYGKLTF TRAV26-2*01 TRAJ52*01 11.0 566.0 TGTGCCAGCAGCTTAGGACAGGCCTACGAGCAGTACTTC CASSLGQAYEQYF TRBV7-8*01 TRBJ2-7*01 16.0 1137.0 CILPLAGGTSYGKLTF_CASSLGQAYEQYF 308 6017 EBNA3A-193-201 EBV 0.83 1022 EBNA3A-193-201 103 5914 10 EBV EBNA3A FLRGRAYGL effector memory T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-B*08:01 B2M MHCI -14120 chip0516_777472 10.53 11.21 Chip4 healthy_6 healthy _ 6746 5077 EBV-LMP2A EBV 0.95 700 EBV-LMP2A 91 4986 9 EBV LMP2A CLGGLLTMV effector memory T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*02:01 B2M MHCI -14121 chip0516_666055 11.87 7.4 Chip4 healthy_8 healthy TGCATCCTGCCCCTTGCTGGTGGTACTAGCTATGGAAAGCTGACATTT CILPLAGGTSYGKLTF TRAV26-2*01 TRAJ52*01 8.0 325.0 TGTGCCAGCAGCTTAGGACAGGCCTACGAGCAGTACTTC CASSLGQAYEQYF TRBV7-8*01 TRBJ2-7*01 33.0 2363.0 CILPLAGGTSYGKLTF_CASSLGQAYEQYF 308 4229 EBNA3A-193-201 EBV 0.86 1022 EBNA3A-193-201 100 4129 10 EBV EBNA3A FLRGRAYGL effector memory T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-B*08:01 B2M MHCI -14122 chip0516_303667 5.59 11.79 Chip4 healthy_6 healthy _ 6746 6973 EBV-LMP1-1 EBV 0.9 237 EBV-LMP1-1 119 6854 6 EBV LMP1 YLLEMLWRL central memory T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*02:01 B2M MHCI -14123 chip0516_814627 9.12 9.27 Chip4 healthy_8 healthy TGTGCCAGCAGTTTAATGGGGACAGGGGGCTTGAGTGAAAAACTGTTTTTT CASSLMGTGGLSEKLFF TRBV28*01 TRBJ1-4*01 6.0 196.0 _CASSLMGTGGLSEKLFF 18 6066 EBNA3A-158-166 EBV 0.79 444 EBNA3A-158-166 85 5981 8 EBV EBNA3A QAKWRLQTL effector memory T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-B*08:01 B2M MHCI -14124 chip0516_256600 12.04 6.82 Chip4 healthy_8 healthy _ 6746 5843 EBNA3A-193-201 EBV 0.94 1022 EBNA3A-193-201 99 5744 10 EBV EBNA3A FLRGRAYGL effector memory T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-B*08:01 B2M MHCI -14125 chip0516_239410 11.45 9.5 Chip4 healthy_6 healthy _ 6746 6242 EBV-LMP2A EBV 0.92 700 EBV-LMP2A 100 6142 10 EBV LMP2A CLGGLLTMV effector memory T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*02:01 B2M MHCI -14126 chip0516_148568 11.37 9.97 Chip4 healthy_6 healthy TGTGCTGTTCTAATGGATAGCAACTATCAGTTAATCTGG CAVLMDSNYQLIW TRAV21*01 TRAJ33*01 17.0 1483.0 TGCGCCAGCAGCGGGGACGGAATGAACACTGAAGCTTTCTTT CASSGDGMNTEAFF TRBV10-2*01 TRBJ1-1*01 22.0 1275.0 CAVLMDSNYQLIW_CASSGDGMNTEAFF 20 6006 EBV-LMP2A EBV 0.86 700 NEG 88 5918 9 EBV LMP2A CLGGLLTMV effector memory T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*02:01 B2M MHCI -14127 chip0516_787522 10.66 12.09 Chip4 healthy_8 healthy TGTGCCAGCAGCTCCGGACAGGCCTACGAGCAGTACTTC CASSSGQAYEQYF TRBV7-8*01 TRBJ2-7*01 6.0 205.0 _CASSSGQAYEQYF 49 3562 EBNA3A-193-201 EBV 0.94 1022 EBNA3A-193-201 106 3456 9 EBV EBNA3A FLRGRAYGL effector memory T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-B*08:01 B2M MHCI -14128 chip0516_614528 10.27 10.38 Chip4 healthy_6 healthy _ 6746 5504 EBV-LMP2A EBV 1.0 700 EBV-LMP2A 106 5398 9 EBV LMP2A CLGGLLTMV effector memory T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*02:01 B2M MHCI -14129 chip0516_602064 -2.81 11.17 Chip4 healthy_9 healthy _ 6746 4797 GAD2-MSR-9 GAD65 0.66 1 GAD2-MSR-9 82 4715 4 HomoSapiens GAD2 MSRKHKWKL Naive T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-B*08:01 B2M MHCI -14130 chip0516_481343 13.2 8.61 Chip4 healthy_9 healthy TGTGCCAGCACCGGGGCGCGGGGATCCTACGAGCAGTACTTC CASTGARGSYEQYF TRBV2*01 TRBJ2-7*01 12.0 1152.0 _CASTGARGSYEQYF 2 3477 ZNT8-VTD-9 ZNT8 0.96 65 ZNT8-VTD-9 96 3381 10 HomoSapiens ZNT8 VTDAAHLLI effector memory T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*01:01 B2M MHCI -14131 chip0516_851061 12.14 9.37 Chip4 healthy_8 healthy _ 6746 5069 BZLF1-190-197 EBV 0.59 2156 BZLF1-190-197 100 4969 10 EBV BZLF1 RAKFKQLL effector memory T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-B*08:01 B2M MHCI -14132 chip0516_537944 -3.96 9.26 Chip4 healthy_9 healthy TGTGCCACCAGATCGTCAGGGGACCAAGAGACCCAGTACTTC CATRSSGDQETQYF TRBV2*01 TRBJ2-5*01 23.0 2023.0 _CATRSSGDQETQYF 1 4450 NP44-52 FLU 0.89 474 NP44-52 83 4367 2 InfluenzaA NP CTELKLSDY Naive T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*01:01 B2M MHCI -14133 chip0516_512100 5.83 12.73 Chip4 healthy_7 healthy TGCAGTGCTAGAGATCCGGGAGCCGAAAACACCATATATTTT CSARDPGAENTIYF TRBV20-1*01 TRBJ1-3*01 1.0 26.0 _CSARDPGAENTIYF 1 4816 M1 FLU 0.89 1250 NEG 103 4713 7 InfluenzaA M1 GILGFVFTL transitional T cells between effector and memory populations PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*02:01 B2M MHCI -14134 chip0516_164401 9.99 11.03 Chip4 healthy_8 healthy TGTGCCGTGAAGACGGACACCAATGCAGGCAAATCAACCTTT CAVKTDTNAGKSTF TRAV12-2*01 TRAJ27*01 21.0 1103.0 CAVKTDTNAGKSTF_ 20 6076 EBNA3A-193-201 EBV 0.75 1022 EBNA3A-193-201 103 5973 9 EBV EBNA3A FLRGRAYGL effector memory T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-B*08:01 B2M MHCI -14135 chip0516_146126 10.35 10.55 Chip4 healthy_8 healthy TGTGCTTATAGAGTTCTCGATAGCAACTATCAGTTAATCTGG CAYRVLDSNYQLIW TRAV38-1*01 TRAJ33*01 6.0 269.0 TGTGCCAGCGCCGGTCAGGGGCCGAGTGGAGATACGCAGTATTTT CASAGQGPSGDTQYF TRBV2*01 TRBJ2-3*01 18.0 1414.0 CAYRVLDSNYQLIW_CASAGQGPSGDTQYF 1 5837 BZLF1-190-197 EBV 0.73 2156 BZLF1-190-197 110 5727 9 EBV BZLF1 RAKFKQLL effector memory T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-B*08:01 B2M MHCI -14136 chip0516_72131 10.88 9.52 Chip4 healthy_8 healthy _ 6746 6359 EBNA3A-193-201 EBV 0.93 1022 EBNA3A-193-201 116 6243 9 EBV EBNA3A FLRGRAYGL effector memory T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-B*08:01 B2M MHCI -14137 chip0516_323611 10.49 8.47 Chip4 healthy_6 healthy TGTGCTGTGGCCCTCTCAAGCAAATCAACCTTT CAVALSSKSTF TRAV8-3*01 TRAJ27*01 2.0 119.0 TGTGCTGTGGGTGGGAAACAATGACCTGCGCTTT CAVGGaa??acNDLRF TRAV8-3*01 TRAJ43*01 4.0 114.0 0.67 TGCGCCAGCAGCGGGGACGGAATGAACACTGAAGCTTTCTTT CASSGDGMNTEAFF TRBV10-2*01 TRBJ1-1*01 9.0 546.0 CAVALSSKSTF_CASSGDGMNTEAFF 50 6340 EBV-LMP2A EBV 0.94 700 EBV-LMP2A 93 6247 10 EBV LMP2A CLGGLLTMV effector memory T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*02:01 B2M MHCI -14138 chip0516_268871 -2.89 7.95 Chip4 healthy_6 healthy TGCGGCACAGAGACGGACAGAGGCTCAACCCTGGGGAGGCTATACTTT CGTETDRGSTLGRLYF TRAV30*01 TRAJ18*01 8.0 161.0 TGTGCCAGCAGCTTGCTACCGGGACTAGCGGTTAATGAGCAGTTCTTC CASSLLPGLAVNEQFF TRBV11-2*01 TRBJ2-1*01 27.0 1693.0 CGTETDRGSTLGRLYF_CASSLLPGLAVNEQFF 1 7602 GP160-311-320 HIV 1.0 109 NEG 103 7499 2 HIV-1 GP160 RGPGRAFVTI Naive T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*02:01 B2M MHCI -14139 chip0516_716149 -4.19 10.82 Chip4 healthy_7 healthy TGTGCAATGAGAGAGGGACCAGGGAGGAAAGCTTATCTTC CAMREGcc??agGGKLIF TRAV14/DV4*01 TRAJ23*01 31.0 1999.0 TGCAGCGTTGTTAGTATAGAAAACACCATATACTTT CSVVSIENTIYF TRBV29-1*01 TRBJ1-3*01 37.0 3852.0 CAMREGcc??agGGKLIF_CSVVSIENTIYF 1 4992 MART1-A27L MART1 0.62 16 NEG 102 4890 2 HomoSapiens MART1 ELAGIGILTV Naive T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*02:01 B2M MHCI -14140 chip0516_390680 15.23 12.85 Chip4 healthy_8 healthy TGTGCCAGCAGCTTAGGACAGGCCTACGAGCAGTACTTC CASSLGQAYEQYF TRBV7-8*01 TRBJ2-7*01 2.0 182.0 _CASSLGQAYEQYF 175 2637 EBNA3A-193-201 EBV 0.94 1022 EBNA3A-193-201 93 2544 12 EBV EBNA3A FLRGRAYGL effector T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-B*08:01 B2M MHCI -14141 chip0516_242055 5.5 9.11 Chip4 healthy_8 healthy TGCATCCTGCCCCTTGCTGGTGGTGCTAGCTATGGAAAGCTGACATTT CILPLAGGASYGKLTF TRAV26-2*01 TRAJ52*01 35.0 1436.0 TGTGCCAGCAGCTTAGGACAGGCCTACGAGCAGTACTTC CASSLGQAYEQYF TRBV7-8*01 TRBJ2-7*01 1.0 44.0 CILPLAGGASYGKLTF_CASSLGQAYEQYF 2 5572 EBNA3A-193-201 EBV 0.98 1022 EBNA3A-193-201 104 5468 6 EBV EBNA3A FLRGRAYGL central memory T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-B*08:01 B2M MHCI -14142 chip0516_437746 11.22 12.74 Chip4 healthy_6 healthy _ 6746 3814 EBV-LMP2A EBV 0.95 700 EBV-LMP2A 104 3710 11 EBV LMP2A CLGGLLTMV effector T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*02:01 B2M MHCI -14143 chip0516_686519 11.63 8.15 Chip4 healthy_6 healthy TGTGCTGTTCTAATGGATAGCAACTATCAGTTAATCTGG CAVLMDSNYQLIW TRAV12-3*01 TRAJ33*01 24.0 2022.0 CAVLMDSNYQLIW_ 20 7601 EBV-LMP2A EBV 0.97 700 EBV-LMP2A 116 7485 10 EBV LMP2A CLGGLLTMV effector memory T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*02:01 B2M MHCI -14144 chip0516_213104 12.58 8.46 Chip4 healthy_6 healthy TGTGCTGTGGCCCTCTCAAGCAAATCAACCTTT CAVALSSKSTF TRAV8-3*01 TRAJ27*01 14.0 1468.0 CAVALSSKSTF_ 58 4158 EBV-LMP2A EBV 0.84 700 EBV-LMP2A 91 4067 10 EBV LMP2A CLGGLLTMV effector memory T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*02:01 B2M MHCI -14145 chip0516_14407 11.36 10.07 Chip4 healthy_8 healthy TACATCCTGCCCCTTGCTGGTCGTGCTGGCTATGAGAGGCTGCCATTG YILPLAGRAGYERLPL TRAV26-2*01 TRAJ52*01 5.0 177.0 TGTGCCAGCAGCTTAGGACAGGCCTACGAGCAGTACTTC CASSLGQAYEQYF TRBV7-8*01 TRBJ2-7*01 10.0 623.0 YILPLAGRAGYERLPL_CASSLGQAYEQYF 1 5491 EBNA3A-193-201 EBV 0.93 1022 EBNA3A-193-201 112 5379 9 EBV EBNA3A FLRGRAYGL effector memory T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-B*08:01 B2M MHCI -14146 chip0516_825270 15.7 12.03 Chip4 healthy_6 healthy TGTGCCGCGGGAGGAAAGCTTATCTTC CAAGGKLIF TRAV12-2*01 TRAJ23*01 2.0 62.0 TGTGCCAGCACAAGACAGGGGAAAGAGACCCAGTACTTC CASTRQGKETQYF TRBV6-2*01,TRBV6-3*01 TRBJ2-5*01 11.0 954.0 CAAGGKLIF_CASTRQGKETQYF 1 1703 EBV-BRLF1 EBV 0.67 1264 NEG 88 1615 12 EBV BRLF1 YVLDHLIVV effector T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*02:01 B2M MHCI -14147 chip0516_854715 10.31 10.19 Chip4 healthy_6 healthy TGCGCCAGCAGCGGGGACGGAATGAACACTGAAGCTTTCTTT CASSGDGMNTEAFF TRBV10-2*01 TRBJ1-1*01 12.0 627.0 _CASSGDGMNTEAFF 131 6134 EBV-LMP2A EBV 0.92 700 EBV-LMP2A 85 6049 9 EBV LMP2A CLGGLLTMV effector memory T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*02:01 B2M MHCI -14148 chip0516_268833 12.34 13.41 Chip4 healthy_6 healthy TGTGCCAGCAGCTCGGGACAGGGGGACAATGAGCAGTTCTTC CASSSGQGDNEQFF TRBV11-2*01 TRBJ2-1*01 13.0 637.0 _CASSSGQGDNEQFF 12 2289 EBV-BLMF1 EBV 0.78 2531 NEG 95 2194 11 EBV BLMF1 GLCTLVAML effector T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*02:01 B2M MHCI -14149 chip0516_855866 10.83 11.36 Chip4 healthy_6 healthy TGCGCCAGCAGCGGGGACGGAATGAACACTGAAGCTTTCTTT CASSGDGMNTEAFF TRBV10-2*01 TRBJ1-1*01 10.0 535.0 _CASSGDGMNTEAFF 131 4943 EBV-LMP2A EBV 0.88 700 EBV-LMP2A 95 4848 9 EBV LMP2A CLGGLLTMV effector memory T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*02:01 B2M MHCI -14150 chip0516_784771 11.88 8.15 Chip4 healthy_8 healthy TGCATCCTGCCCCTTGCTGGTGGTACTAGCTATGGAAAGCTGACATTT CILPLAGGTSYGKLTF TRAV26-2*01 TRAJ52*01 4.0 165.0 TGTGCCAGCAGCTTAGGACAGGCCTACGAGCAGTACTTC CASSLGQAYEQYF TRBV7-8*01 TRBJ2-7*01 2.0 21.0 CILPLAGGTSYGKLTF_CASSLGQAYEQYF 308 4163 EBNA3A-193-201 EBV 0.87 1022 EBNA3A-193-201 98 4065 10 EBV EBNA3A FLRGRAYGL effector memory T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-B*08:01 B2M MHCI -14151 chip0516_566594 15.88 11.53 Chip4 healthy_8 healthy TGCATCCTGCCCCTTGCTGGTGGTACTAGCTATGGAAAGCTGACATTT CILPLAGGTSYGKLTF TRAV26-2*01 TRAJ52*01 21.0 1319.0 TGTGCCAGCAGCTTAGGACAGGCCTACGAGCAGTACTTC CASSLGQAYEQYF TRBV7-8*01 TRBJ2-7*01 24.0 1541.0 CILPLAGGTSYGKLTF_CASSLGQAYEQYF 308 3445 EBNA3A-193-201 EBV 0.85 1022 EBNA3A-193-201 108 3337 12 EBV EBNA3A FLRGRAYGL effector T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-B*08:01 B2M MHCI -14152 chip0516_91223 -0.7 4.65 Chip4 healthy_8 healthy TGTGCTCGTCACAGAGGAGGAAGCTACATACCTACATTT CARHRGGSYIPTF TRAV19*01 TRAJ6*01 20.0 1820.0 TGCGCCAGCAGCCAAGTCCTAACCGGGACGGAGAATTCACCCCTCCACTTT CASSQVLTGTENSPLHF TRBV4-1*01 TRBJ1-6*01 28.0 1335.0 CARHRGGSYIPTF_CASSQVLTGTENSPLHF 1 6182 PB1-590-599 FLU 0.83 37 NEG 99 6083 5 InfluenzaA PB1 LVSDGGPNLY natural killer-like T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*01:01 B2M MHCI -14153 chip0516_88839 10.94 10.58 Chip4 healthy_8 healthy _ 6746 4810 BZLF1-190-197 EBV 0.97 2156 BZLF1-190-197 109 4701 9 EBV BZLF1 RAKFKQLL effector memory T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-B*08:01 B2M MHCI -14154 chip0516_376026 11.12 10.19 Chip4 healthy_9 healthy _ 6746 4601 BZLF1-190-197 EBV 0.93 2156 BZLF1-190-197 95 4506 9 EBV BZLF1 RAKFKQLL effector memory T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-B*08:01 B2M MHCI -14155 chip0516_705099 11.26 10.8 Chip4 healthy_6 healthy TGCGCCAGCAGCGGGGACGGAATGAACACTGAAGCTTTCTTT CASSGDGMNTEAFF TRBV10-2*01 TRBJ1-1*01 10.0 691.0 _CASSGDGMNTEAFF 131 4825 EBV-LMP2A EBV 0.82 700 EBV-LMP2A 109 4716 9 EBV LMP2A CLGGLLTMV effector memory T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*02:01 B2M MHCI -14156 chip0516_229158 11.44 8.61 Chip4 healthy_8 healthy TGCATCCTGCCCCTTGCTGGTGGTACTAGCTATGGAAAGCTGACATTT CILPLAGGTSYGKLTF TRAV26-2*01 TRAJ52*01 24.0 1178.0 TGTGCCAACAGCTTAGGACAGGCCTACGAGCAGTACTTC CANSLGQAYEQYF TRBV7-8*01 TRBJ2-7*01 31.0 1983.0 CILPLAGGTSYGKLTF_CANSLGQAYEQYF 2 5354 EBNA3A-193-201 EBV 0.83 1022 EBNA3A-193-201 98 5256 10 EBV EBNA3A FLRGRAYGL effector memory T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-B*08:01 B2M MHCI -14157 chip0516_683124 11.25 10.94 Chip4 healthy_6 healthy TGTGCTGTGGCCCTCTCAAGCAAATCAACCTTT CAVALSSKSTF TRAV8-3*01 TRAJ27*01 1.0 23.0 TGCGCCAGCAGCGGGGACGGAATGAACACTGAAGCTTTCTTT CASSGDGMNTEAFF TRBV10-2*01 TRBJ1-1*01 4.0 281.0 CAVALSSKSTF_CASSGDGMNTEAFF 50 4903 EBV-LMP2A EBV 0.88 700 EBV-LMP2A 98 4805 9 EBV LMP2A CLGGLLTMV effector memory T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*02:01 B2M MHCI -14158 chip0516_174350 10.71 9.11 Chip4 healthy_8 healthy _ 6746 7081 EBNA3A-158-166 EBV 0.68 444 EBNA3A-158-166 108 6973 10 EBV EBNA3A QAKWRLQTL effector memory T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-B*08:01 B2M MHCI -14159 chip0516_87858 10.93 11.92 Chip4 healthy_6 healthy _ 6746 3987 EBV-LMP2A EBV 1.0 700 NEG 107 3880 9 EBV LMP2A CLGGLLTMV effector memory T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*02:01 B2M MHCI -14160 chip0516_213123 -0.22 9.23 Chip4 healthy_7 healthy _ 6746 4099 MART1-ALA MART1 0.91 269 NEG 91 4008 4 HomoSapiens MART1 ALAGIGILTV Naive T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*02:01 B2M MHCI -14161 chip0516_394390 -3.71 10.18 Chip4 healthy_8 healthy _ 6746 5761 GAD2-YAF-9 GAD65 0.6 6 NEG 85 5676 2 HomoSapiens GAD2 YAFLHATDL Naive T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-B*08:01 B2M MHCI -14162 chip0516_648973 12.59 9.1 Chip4 healthy_6 healthy _ 6746 3558 EBV-BRLF1 EBV 0.78 1264 NEG 93 3465 10 EBV BRLF1 YVLDHLIVV effector memory T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*02:01 B2M MHCI -14163 chip0516_88900 11.81 7.45 Chip4 healthy_8 healthy TGCATCCTGCCCCTTGCTGGTGGTACTAGCTCTGGCAAGCTGACCTTT CILPLAGGTSSGKLTF TRAV26-2*01 TRAJ52*01 9.0 610.0 TGTGCCAGCAGCTTAGGACAGGCCTACGAGCAGTACTTC CASSLGQAYEQYF TRBV7-8*01 TRBJ2-7*01 28.0 2047.0 CILPLAGGTSSGKLTF_CASSLGQAYEQYF 2 5345 EBNA3A-193-201 EBV 0.77 1022 EBNA3A-193-201 116 5229 10 EBV EBNA3A FLRGRAYGL effector memory T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-B*08:01 B2M MHCI -14164 chip0516_628715 9.87 10.23 Chip4 healthy_6 healthy TGCGCCAGCAGCGGGGACGGAATGAACACTGAAGCTTTCTTT CASSGDGMNTEAFF TRBV10-2*01 TRBJ1-1*01 12.0 772.0 _CASSGDGMNTEAFF 131 5927 EBV-LMP2A EBV 0.96 700 EBV-LMP2A 104 5823 9 EBV LMP2A CLGGLLTMV effector memory T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*02:01 B2M MHCI -14165 chip0516_610699 9.65 8.6 Chip4 healthy_6 healthy TGCGCCAGCATCGGGGACGGAATGAACACTGAAGCTTTCTTT CASIGDGMNTEAFF TRBV10-2*01 TRBJ1-1*01 17.0 1096.0 _CASIGDGMNTEAFF 1 6938 EBV-LMP2A EBV 0.89 700 EBV-LMP2A 89 6849 8 EBV LMP2A CLGGLLTMV effector memory T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*02:01 B2M MHCI -14166 chip0516_51858 12.07 7.11 Chip4 healthy_6 healthy _ 6746 5703 EBV-LMP2A EBV 0.89 700 EBV-LMP2A 117 5586 10 EBV LMP2A CLGGLLTMV effector memory T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*02:01 B2M MHCI -14167 chip0516_812343 12.87 9.64 Chip4 healthy_6 healthy _ 6746 4601 EBV-LMP2A EBV 0.96 700 EBV-LMP2A 109 4492 10 EBV LMP2A CLGGLLTMV effector memory T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*02:01 B2M MHCI -14168 chip0516_587532 10.23 10.32 Chip4 healthy_6 healthy _ 6746 6333 EBV-LMP2A EBV 0.93 700 EBV-LMP2A 85 6248 9 EBV LMP2A CLGGLLTMV effector memory T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*02:01 B2M MHCI -14169 chip0516_310179 11.34 9.2 Chip4 healthy_6 healthy TGTGCCAGTAGGGGACTAGTGGGGAGCGCCGGGGAGCTGTTTTTT CASRGLVGSAGELFF TRBV19*01 TRBJ2-2*01 7.0 516.0 _CASRGLVGSAGELFF 5 4273 EBV-BRLF1 EBV 1.0 1264 NEG 81 4192 9 EBV BRLF1 YVLDHLIVV effector memory T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*02:01 B2M MHCI -14170 chip0516_526522 11.47 7.22 Chip4 healthy_8 healthy TGTGCCAGCAGCTTAGGACAGGCCTACGAGCAGTACTTC CASSLGQAYEQYF TRBV7-8*01 TRBJ2-7*01 21.0 1068.0 _CASSLGQAYEQYF 175 6169 EBNA3A-193-201 EBV 0.72 1022 EBNA3A-193-201 99 6070 10 EBV EBNA3A FLRGRAYGL effector memory T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-B*08:01 B2M MHCI -14171 chip0516_426419 12.43 7.95 Chip4 healthy_8 healthy TGCATCCTGCCCCTTGCTGGTGGTACTAGCTATGGAAAGCTGACATTT CILPLAGGTSYGKLTF TRAV26-2*01 TRAJ52*01 22.0 974.0 CILPLAGGTSYGKLTF_ 55 4865 EBNA3A-193-201 EBV 0.94 1022 EBNA3A-193-201 106 4759 10 EBV EBNA3A FLRGRAYGL effector memory T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-B*08:01 B2M MHCI -14172 chip0516_379382 12.04 7.75 Chip4 healthy_8 healthy TGCATCCTGCCCCTTGCTGGTGGTACTAGCTATGGAAAGCTGACATTT CILPLAGGTSYGKLTF TRAV26-2*01 TRAJ52*01 13.0 756.0 TGTGCCAGCAGCTTAGGACAGGCCTACGAGCAGTACTTC CASSLGQAYEQYF TRBV7-8*01 TRBJ2-7*01 3.0 202.0 CILPLAGGTSYGKLTF_CASSLGQAYEQYF 308 4403 EBNA3A-193-201 EBV 0.83 1022 EBNA3A-193-201 108 4295 10 EBV EBNA3A FLRGRAYGL effector memory T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-B*08:01 B2M MHCI -14173 chip0516_71782 -4.62 9.24 Chip4 healthy_9 healthy _ 6746 4560 LMP2A-CPL EBV 0.42 44 LMP2A-CPL 88 4472 2 EBV LMP2A CPLSKILL Naive T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-B*08:01 B2M MHCI -14174 chip0516_67749 10.14 10.09 Chip4 healthy_6 healthy _ 6746 6341 EBV-LMP2A EBV 0.93 700 EBV-LMP2A 101 6240 9 EBV LMP2A CLGGLLTMV effector memory T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*02:01 B2M MHCI -14175 chip0516_857477 -2.57 7.8 Chip4 healthy_8 healthy TGTGCAGAGAACCAGGCAGGAACTGCTCTGATCTTT CAENQAGTALIF TRAV13-2*01 TRAJ15*01 14.0 1397.0 CAENQAGTALIF_ 2 8169 NP30-38 FLU 0.78 72 NP30-38 85 8084 2 InfluenzaA NP RPIIRPATL Naive T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-B*08:01 B2M MHCI -14176 chip0516_763820 9.39 9.56 Chip4 healthy_8 healthy TGCATCCTGCCCCTTGCTGGTGGTACTAGCTATGGAAAGCTGACATTT CILPLAGGTSYGKLTF TRAV26-2*01 TRAJ52*01 3.0 158.0 CILPLAGGTSYGKLTF_ 55 7989 EBNA3A-193-201 EBV 0.89 1022 EBNA3A-193-201 109 7880 8 EBV EBNA3A FLRGRAYGL effector memory T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-B*08:01 B2M MHCI -14177 chip0516_777682 -1.92 11.47 Chip4 healthy_7 healthy TGTGCCAGCAGAGGTCGGCTGGACCGTGCCTTT CASRGRLDRAF TRBV28*01 TRBJ1-1*01 4.0 226.0 _CASRGRLDRAF 1 4115 PGT-178 PGT 0.76 1480 PGT-178 93 4022 3 HomoSapiens PGT LLAGIGTVPI Naive T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*02:01 B2M MHCI -14178 chip0516_167721 5.91 12.41 Chip4 healthy_7 healthy TGTGCCAGCAGCTTAGGAATAATGGGGAATGAGCAGTTCTTC CASSLGIMGNEQFF TRBV7-2*01 TRBJ2-1*01 23.0 1156.0 _CASSLGIMGNEQFF 1 6717 MART1-ALA MART1 0.51 269 MART1-ALA 96 6621 7 HomoSapiens MART1 ALAGIGILTV transitional T cells between effector and memory populations PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*02:01 B2M MHCI -14179 chip0516_784885 12.13 14.0 Chip4 healthy_6 healthy TGTGCAATGAGAGAGGGCGGGAACTTCAACAAATTTTACTTT CAMREGGNFNKFYF TRAV14/DV4*01 TRAJ21*01 26.0 1172.0 TGCAGTGCGCCATGTCCCCCCCACAATGAGCAGTTCTTC CSAPCPPHNEQFF TRBV20-1*01 TRBJ2-1*01 15.0 931.0 CAMREGGNFNKFYF_CSAPCPPHNEQFF 1 1428 EBV-BRLF1 EBV 1.0 1264 EBV-BRLF1 93 1335 11 EBV BRLF1 YVLDHLIVV effector T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*02:01 B2M MHCI -14180 chip0516_568090 8.46 11.55 Chip4 healthy_8 healthy TACATCCTGCCCCTTGCTGGTGGTCCTCCCTATCCACATTTGACATTT YILPLAGGPPYPHLTF TRAV26-2*01 TRAJ52*01 5.0 529.0 TCCATCCTCCCCCTTGCTCCTGGTACTGGATACCGAAAGCTGACATTT SILPLAPGTGYRKLTF TRAV26-2*01 TRAJ52*01 3.0 8.0 0.3 YILPLAGGPPYPHLTF_ 1 5314 EBNA3A-193-201 EBV 0.89 1022 EBNA3A-193-201 82 5232 7 EBV EBNA3A FLRGRAYGL transitional T cells between effector and memory populations PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-B*08:01 B2M MHCI -14181 chip0516_536680 10.47 10.12 Chip4 healthy_6 healthy TGCGCCAGCAGCGGGGACGGAATGAACACTGAAGCTTTCTTT CASSGDGMNTEAFF TRBV10-2*01 TRBJ1-1*01 14.0 748.0 _CASSGDGMNTEAFF 131 6087 EBV-LMP2A EBV 0.97 700 EBV-LMP2A 103 5984 9 EBV LMP2A CLGGLLTMV effector memory T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*02:01 B2M MHCI -14182 chip0516_136255 5.62 11.11 Chip4 healthy_9 healthy TGTGCCATCGCAAACGGGCAGGGGCCGGGCGCAGATACGCAGTATTTT CAIANGQGPGADTQYF TRBV10-3*01 TRBJ2-3*01 31.0 1943.0 _CAIANGQGPGADTQYF 2 5030 NP44-52 FLU 0.91 474 NP44-52 88 4942 6 InfluenzaA NP CTELKLSDY central memory T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*01:01 B2M MHCI -14183 chip0516_94062 -0.44 8.04 Chip4 healthy_6 healthy TGCATCGTCAGAGTCCCTCGCAGAGACGGGCAGGAGAGCACTTACTTTT CIVRVPRR??gTGRRALTF TRAV26-1*01 TRAJ5*01 33.0 1785.0 CIVRVPRR??gTGRRALTF_ 1 8436 PTPRN-482-490 PTPRN 0.82 10 NEG 96 8340 4 HomoSapiens PTPRN SLAAGVKLL Naive T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*02:01 B2M MHCI -14184 chip0516_599650 -3.06 9.16 Chip4 healthy_7 healthy TGTGCCAGCAGCTTATCAGGAGGGAGGAGCGATCAGCCCCAGCATTTT CASSLSGGRSDQPQHF TRBV7-6*01 TRBJ1-5*01 4.0 345.0 _CASSLSGGRSDQPQHF 1 4681 POL-334-342 HIV 0.6 12 NEG 83 4598 2 HIV-1 POL VIYQYMDDL Naive T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*02:01 B2M MHCI -14185 chip0516_675914 -3.48 9.39 Chip4 healthy_7 healthy _ 6746 5516 PGT-178 PGT 0.49 1480 PGT-178 112 5404 2 HomoSapiens PGT LLAGIGTVPI Naive T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*02:01 B2M MHCI -14186 chip0516_827703 10.52 13.77 Chip4 healthy_8 healthy TGCATCCTGCCCCTTGCTGGTGGTACTAGCTATGGAAAGCTGACACTT CILPLAGGTSYGKLTL TRAV26-2*01 TRAJ52*01 12.0 798.0 TGTGCCAGCAGCTTAGGACAGGCCTACGAGCAGTACTTC CASSLGQAYEQYF TRBV7-8*01 TRBJ2-7*01 5.0 343.0 CILPLAGGTSYGKLTL_CASSLGQAYEQYF 1 2490 EBNA3A-193-201 EBV 1.0 1022 EBNA3A-193-201 95 2395 11 EBV EBNA3A FLRGRAYGL effector T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-B*08:01 B2M MHCI -14187 chip0516_723029 12.42 7.77 Chip4 healthy_8 healthy TGTGCCAGCAGCTTAGGACAGGCCTACGAGCAGTACTTC CASSLGQAYEQYF TRBV7-8*01 TRBJ2-7*01 2.0 114.0 _CASSLGQAYEQYF 175 4367 EBNA3A-193-201 EBV 0.67 1022 EBNA3A-193-201 126 4241 10 EBV EBNA3A FLRGRAYGL effector memory T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-B*08:01 B2M MHCI -14188 chip0516_3282 9.71 8.94 Chip4 healthy_6 healthy TGCGCCAGCAGCGAGGACGGACTGAACCCTGAGGCTGTCTTT CASSEDGLNPEAVF TRBV10-2*01 TRBJ1-1*01 4.0 300.0 _CASSEDGLNPEAVF 1 7070 EBV-LMP2A EBV 1.0 700 EBV-LMP2A 106 6964 8 EBV LMP2A CLGGLLTMV effector memory T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*02:01 B2M MHCI -14189 chip0516_290563 11.2 12.01 Chip4 healthy_6 healthy TGCGCCAGCAGCGGGGACGGAATGAACACTGAAGCTTTCTTT CASSGDGMNTEAFF TRBV10-2*01 TRBJ1-1*01 24.0 1392.0 _CASSGDGMNTEAFF 131 3202 EBV-LMP2A EBV 0.89 700 EBV-LMP2A 89 3113 9 EBV LMP2A CLGGLLTMV effector memory T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*02:01 B2M MHCI -14190 chip0516_48877 -3.95 12.6 Chip4 healthy_9 healthy TATCCTCTGATCGATAGCAGCTATCAATTGATCTTC YPLIDSSYQLIF TRAV8-6*01 TRAJ12*01 5.0 333.0 YPLIDSSYQLIF_ 1 4182 PB1-590-599 FLU 0.62 37 NEG 93 4089 1 InfluenzaA PB1 LVSDGGPNLY Naive T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*01:01 B2M MHCI -14191 chip0516_703874 -3.82 11.13 Chip4 healthy_8 healthy TGTGCCTCCGGAACCTACAAACACATCTTT CASGTYKHIF TRAV12-1*01 TRAJ40*01 2.0 20.0 TGTGCTACGGGGAAACACCGACAAGCTCATCTTT CATGKca??ccDKLIF TRAV17*01 TRAJ34*01 2.0 309.0 0.5 TGTGCCAGCGGAGGGCCGGCCCTCCACTTT CASGGPALHF TRBV27*01 TRBJ1-6*01 14.0 1608.0 CASGTYKHIF_CASGGPALHF 1 4600 G6PC2-YLK-8 IGRP 0.71 27 G6PC2-YLK-8 88 4512 2 HomoSapiens G6PC2 YLKTNLFL Naive T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-B*08:01 B2M MHCI -14192 chip0516_221815 8.96 11.61 Chip4 healthy_8 healthy TGTGCCGTGAGGACTTCAGGCTTTCAGAAACTTGTATTT CAVRTSGFQKLVF TRAV12-2*01 TRAJ8*01 27.0 2003.0 TGTGCCAGCAGTCTCAGGGAATTTCACGAGACCCAGTACTTC CASSLREFHETQYF TRBV6-1*01 TRBJ2-5*01 1.0 33.0 CAVRTSGFQKLVF_CASSLREFHETQYF 2 5059 EBNA3A-193-201 EBV 0.91 1022 EBNA3A-193-201 97 4962 9 EBV EBNA3A FLRGRAYGL effector memory T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-B*08:01 B2M MHCI -14193 chip0516_149672 -3.11 9.13 Chip4 healthy_8 healthy TGTGCTGTCGCTGGTGGTACTAGCTATGGAAAGCTGACATTT CAVAGGTSYGKLTF TRAV8-3*01 TRAJ52*01 38.0 2483.0 CAVAGGTSYGKLTF_ 1 6602 NP140-148 FLU 0.7 102 NP140-148 101 6501 2 InfluenzaA NP HSNLNDATY Naive T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*01:01 B2M MHCI -14194 chip0516_494245 8.72 13.84 Chip4 healthy_6 healthy TGTGCCAGCAGTTACACCGCAAAGACAGATACTAGCAATCAGCCCCAGCATTTT CASSYTAKTDTSNQPQHF TRBV6-2*01,TRBV6-3*01 TRBJ1-5*01 18.0 621.0 _CASSYTAKTDTSNQPQHF 2 2745 M1 FLU 0.96 1250 M1 96 2649 11 InfluenzaA M1 GILGFVFTL effector T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*02:01 B2M MHCI -14195 chip0516_307953 -3.82 8.6 Chip4 healthy_6 healthy _ 6746 6392 PGT-178 PGT 0.64 1480 NEG 80 6312 2 HomoSapiens PGT LLAGIGTVPI Naive T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*02:01 B2M MHCI -14196 chip0516_273386 -1.12 7.62 Chip4 healthy_7 healthy TGTGTGGGGTCAGGAGGAGGTGCTGACGGACTCCCCTTT CVGSGGGADGLPF TRAV12-1*01 TRAJ45*01 18.0 1223.0 TGTGCCAGCAGCTTGGCCGGGACGGGGATTTATCACACTGAAGCTTTCTTT CASSLAGTGIYHTEAFF TRBV5-6*01 TRBJ1-1*01 4.0 64.0 CVGSGGGADGLPF_CASSLAGTGIYHTEAFF 1 4693 MART1-A27L MART1 0.69 16 MART1-A27L 101 4592 4 HomoSapiens MART1 ELAGIGILTV Naive T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*02:01 B2M MHCI -14197 chip0516_821794 6.51 11.45 Chip4 healthy_8 healthy _ 6746 6006 EBNA3A-193-201 EBV 0.94 1022 EBNA3A-193-201 92 5914 7 EBV EBNA3A FLRGRAYGL transitional T cells between effector and memory populations PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-B*08:01 B2M MHCI -14198 chip0516_646060 13.0 7.32 Chip4 healthy_8 healthy TGTGCCGTGGAGACGGACACTAATGCAGGCAAATAAACCTTT CAVETDTNAGK*TF TRAV12-2*01 TRAJ27*01 6.0 587.0 CAVETDTNAGK*TF_ 1 6278 EBNA3A-193-201 EBV 0.84 1022 EBNA3A-193-201 103 6175 10 EBV EBNA3A FLRGRAYGL effector memory T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-B*08:01 B2M MHCI -14199 chip0516_69972 6.89 10.69 Chip4 healthy_6 healthy TGTGCAATGAGCGCGGCTGGAGCCAATAGTAAGCTGACATTT CAMSAAGANSKLTF TRAV12-3*01 TRAJ56*01 41.0 3293.0 TGTGCCAGCAGCCCTCCCTACAATGAGCAGTTCTTC CASSPPYNEQFF TRBV7-8*01 TRBJ2-1*01 17.0 1181.0 CAMSAAGANSKLTF_CASSPPYNEQFF 4 6319 ZNT8-115-123 ZNT8 0.93 74 NEG 119 6200 7 HomoSapiens ZNT8 LLSLFSLWL transitional T cells between effector and memory populations PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*02:01 B2M MHCI -14200 chip0516_758204 11.14 8.9 Chip4 healthy_8 healthy TGTGCCGTGAAAGGGGACACCAATGCAGGCAAATCAACCTTT CAVKGDTNAGKSTF TRAV12-2*01 TRAJ27*01 39.0 2079.0 TGTGCCAGCAGTGACTCGGTCGGCTTTAATTCACCCCTCCACTTT CASSDSVGFNSPLHF TRBV6-4*01 TRBJ1-6*01 62.0 3754.0 CAVKGDTNAGKSTF_CASSDSVGFNSPLHF 1 5087 EBNA3A-193-201 EBV 0.96 1022 EBNA3A-193-201 91 4996 10 EBV EBNA3A FLRGRAYGL effector memory T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-B*08:01 B2M MHCI -14201 chip0516_778758 11.71 8.08 Chip4 healthy_6 healthy TGTGCTGTGGCCCTCTCAAGCAAATCAACCTTT CAVALSSKSTF TRAV8-3*01 TRAJ27*01 2.0 206.0 CAVALSSKSTF_ 58 5058 EBV-LMP2A EBV 1.0 700 EBV-LMP2A 92 4966 10 EBV LMP2A CLGGLLTMV effector memory T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*02:01 B2M MHCI -14202 chip0516_637885 10.72 9.33 Chip4 healthy_6 healthy _ 6746 6039 EBV-LMP2A EBV 0.87 700 EBV-LMP2A 107 5932 9 EBV LMP2A CLGGLLTMV effector memory T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*02:01 B2M MHCI -14203 chip0516_494150 11.18 9.97 Chip4 healthy_6 healthy TGCGCCAGCAGCGGGGACGGAATGAACACTGAAGCTTTCTTT CASSGDGMNTEAFF TRBV10-2*01 TRBJ1-1*01 1.0 11.0 _CASSGDGMNTEAFF 131 5483 EBV-LMP2A EBV 1.0 700 EBV-LMP2A 84 5399 9 EBV LMP2A CLGGLLTMV effector memory T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*02:01 B2M MHCI -14204 chip0516_435172 -4.3 10.98 Chip4 healthy_7 healthy TGTCTTCTGGGAGATAAATAATACTGGAGCCAATAGTAAGCTGACATTT CLLGDK*Y??tGANSKLTF TRAV40*01 TRAJ56*01 1.0 26.0 TGTGCCAGCAGCCAAGAGTCTGTGGGGGTTCAGTGGGCCCTTCCAAGCGGGGAGCTGTTTTTT CASSQESVGVQWALPSGELFF TRBV14*01 TRBJ2-2*01 4.0 111.0 CLLGDK*Y??tGANSKLTF_CASSQESVGVQWALPSGELFF 1 4423 PGT-178 PGT 0.82 1480 PGT-178 87 4336 1 HomoSapiens PGT LLAGIGTVPI Naive T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*02:01 B2M MHCI -14205 chip0516_402395 4.89 10.02 Chip4 healthy_7 healthy TGCAGCGTTGAAGATCCTAGGGCCGGGGAGCTGTTTTTT CSVEDPRAGELFF TRBV29-1*01 TRBJ2-2*01 40.0 2671.0 _CSVEDPRAGELFF 2 4603 MART1-ALA MART1 0.72 269 NEG 92 4511 6 HomoSapiens MART1 ALAGIGILTV central memory T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*02:01 B2M MHCI -14206 chip0516_134085 -0.79 9.51 Chip4 healthy_7 healthy TGCGCAGCAGAGGAGCAGGCAACATGCTCACCTTT CAAEEca?GNMLTF TRAV21*01 TRAJ39*01 2.0 49.0 CAAEEca?GNMLTF_ 1 4661 PGT-178 PGT 0.78 1480 NEG 94 4567 4 HomoSapiens PGT LLAGIGTVPI Naive T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*02:01 B2M MHCI -14207 chip0516_34237 -2.66 9.17 Chip4 healthy_8 healthy TGTGCCGTGGAAGCAGGAGCTGGGAGTTACCAACTCACTTTC CAVEAGAGSYQLTF TRAV39*01 TRAJ28*01 1.0 28.0 TGTGCTGTCAGAGGCGAGCTTT CAVag??agASF TRAV41*01 TRAJ11*01 1.0 212.0 0.5 TGTGCCAGCAGCCCCGGGTACGTTCTGGATGAAAAACTGTTTTTT CASSPGYVLDEKLFF TRBV6-1*01 TRBJ1-4*01 2.0 54.0 CAVEAGAGSYQLTF_CASSPGYVLDEKLFF 1 6988 G6PC2-YLK-8 IGRP 0.8 27 G6PC2-YLK-8 87 6901 2 HomoSapiens G6PC2 YLKTNLFL Naive T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-B*08:01 B2M MHCI -14208 chip0516_306285 -3.0 13.47 Chip4 healthy_9 healthy _ 6746 3370 M1-ALA FLU 0.75 10 NEG 95 3275 1 InfluenzaA M1 ALASCMGLIY Naive T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*01:01 B2M MHCI -14209 chip0516_56978 11.39 7.86 Chip4 healthy_6 healthy _ 6746 6229 EBV-LMP2A EBV 0.94 700 EBV-LMP2A 88 6141 10 EBV LMP2A CLGGLLTMV effector memory T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*02:01 B2M MHCI -14210 chip0516_319674 10.24 10.4 Chip4 healthy_6 healthy _ 6746 5320 EBV-LMP2A EBV 0.91 700 EBV-LMP2A 92 5228 9 EBV LMP2A CLGGLLTMV effector memory T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*02:01 B2M MHCI -14211 chip0516_169004 -2.87 14.43 Chip4 healthy_8 healthy _ 6746 2529 ZNT8-VTD-9 ZNT8 0.69 65 ZNT8-VTD-9 76 2453 1 HomoSapiens ZNT8 VTDAAHLLI Naive T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*01:01 B2M MHCI -14212 chip0516_61227 4.83 10.48 Chip4 healthy_8 healthy TGTGCCAGCAGCTTAGGACAGGCCTACGAGCAGTACTTC CASSLGQAYEQYF TRBV7-8*01 TRBJ2-7*01 7.0 493.0 _CASSLGQAYEQYF 175 3019 EBNA3A-193-201 EBV 0.94 1022 EBNA3A-193-201 97 2922 6 EBV EBNA3A FLRGRAYGL central memory T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-B*08:01 B2M MHCI -14213 chip0516_740747 -4.58 9.57 Chip4 healthy_7 healthy TGTGCACTCCAGAGGCTCAACCCTGGGGGGCCTATACTTT CALQRLaa??ccLGGLYF TRAV12-3*01 TRAJ18*01 18.0 1628.0 TGCAGCGTTGAAGAGGGGGCTAGCGGGATTTACGAGCAGTACTTC CSVEEGASGIYEQYF TRBV29-1*01 TRBJ2-7*01 139.0 9675.0 CALQRLaa??ccLGGLYF_CSVEEGASGIYEQYF 1 5159 PGT-178 PGT 0.81 1480 PGT-178 96 5063 2 HomoSapiens PGT LLAGIGTVPI Naive T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*02:01 B2M MHCI -14214 chip0516_698821 -2.25 12.32 Chip4 healthy_8 healthy _ 6746 4749 IAPP-ILK-8 IAPP 0.76 20 IAPP-ILK-8 94 4655 4 HomoSapiens IAPP ILKLQVFL Naive T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-B*08:01 B2M MHCI -14215 chip0516_98209 12.36 7.84 Chip4 healthy_6 healthy TGTGCTGTGGCCCTCTCAAGCAAATCAACCTTT CAVALSSKSTF TRAV8-3*01 TRAJ27*01 7.0 767.0 TGCGCCAGCAGCGGGGACGGAATGAACACTGAAGCTTTCTTT CASSGDGMNTEAFF TRBV10-2*01 TRBJ1-1*01 1.0 31.0 CAVALSSKSTF_CASSGDGMNTEAFF 50 4872 EBV-LMP2A EBV 0.97 700 EBV-LMP2A 92 4780 10 EBV LMP2A CLGGLLTMV effector memory T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*02:01 B2M MHCI -14216 chip0516_706510 10.83 7.6 Chip4 healthy_6 healthy _ 6746 7175 EBV-LMP2A EBV 0.94 700 EBV-LMP2A 93 7082 10 EBV LMP2A CLGGLLTMV effector memory T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*02:01 B2M MHCI -14217 chip0516_63880 10.67 12.13 Chip4 healthy_6 healthy _ 6746 4180 EBV-LMP2A EBV 1.0 700 EBV-LMP2A 88 4092 11 EBV LMP2A CLGGLLTMV effector T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*02:01 B2M MHCI -14218 chip0516_774100 -2.8 8.18 Chip4 healthy_8 healthy _ 6746 4953 INS-MAL-8 INS 0.5 38 NEG 89 4864 2 HomoSapiens INS MALWMRLL Naive T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-B*08:01 B2M MHCI -14219 chip0516_748178 -2.43 9.22 Chip4 healthy_8 healthy _ 6746 6188 IAPP-STN-9 IAPP 0.53 48 IAPP-STN-9 94 6094 3 HomoSapiens IAPP STNVGSNTY Naive T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*01:01 B2M MHCI -14220 chip0516_413454 11.38 8.57 Chip4 healthy_6 healthy TGCGCCAGCAGCGGGGACGGAATGAACACTGAAGCTTTCTTT CASSGDGMNTEAFF TRBV10-2*01 TRBJ1-1*01 33.0 1803.0 _CASSGDGMNTEAFF 131 6550 EBV-LMP2A EBV 0.9 700 EBV-LMP2A 94 6456 10 EBV LMP2A CLGGLLTMV effector memory T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*02:01 B2M MHCI -14221 chip0516_863224 11.42 8.69 Chip4 healthy_6 healthy _ 6746 6803 EBV-LMP2A EBV 1.0 700 EBV-LMP2A 103 6700 10 EBV LMP2A CLGGLLTMV effector memory T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*02:01 B2M MHCI -14222 chip0516_657267 7.83 10.85 Chip4 healthy_8 healthy TGTGCCAGCAGTTTAATGGGGACAGGGGGCTTGAGTGAAAAACTGTTTTTT CASSLMGTGGLSEKLFF TRBV28*01 TRBJ1-4*01 8.0 284.0 _CASSLMGTGGLSEKLFF 18 7990 EBNA3A-158-166 EBV 0.75 444 EBNA3A-158-166 101 7889 7 EBV EBNA3A QAKWRLQTL transitional T cells between effector and memory populations PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-B*08:01 B2M MHCI -14223 chip0516_646645 -1.59 7.71 Chip4 healthy_7 healthy TGTGCCAGTACCCACCTACCGGGACTCACCTCTGGAAACACCATATATTTT CASTHLPGLTSGNTIYF TRBV19*01 TRBJ1-3*01 1.0 26.0 _CASTHLPGLTSGNTIYF 1 6578 PGT-178 PGT 0.71 1480 PGT-178 109 6469 3 HomoSapiens PGT LLAGIGTVPI Naive T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*02:01 B2M MHCI -14224 chip0516_280836 10.37 9.83 Chip4 healthy_6 healthy TGTGCTGTGGCCCTCTCAAGCAAATCAACCTTT CAVALSSKSTF TRAV8-3*01 TRAJ27*01 3.0 129.0 TGTGCCAGCAGCTTAGGACAGGCCTACGAGCAGTACTTC CASSLGQAYEQYF TRBV7-8*01 TRBJ2-7*01 1.0 14.0 CAVALSSKSTF_CASSLGQAYEQYF 3 6204 EBV-LMP2A EBV 0.92 700 EBV-LMP2A 99 6105 9 EBV LMP2A CLGGLLTMV effector memory T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*02:01 B2M MHCI -14225 chip0516_706200 -4.48 10.42 Chip4 healthy_9 healthy TGTGCCAGCAAGCAGTGGATCTCCTACGAGCAGTACTTC CASKQWISYEQYF TRBV2*01 TRBJ2-7*01 25.0 1748.0 _CASKQWISYEQYF 1 4024 ZNT8-VTD-9 ZNT8 0.81 65 ZNT8-VTD-9 94 3930 2 HomoSapiens ZNT8 VTDAAHLLI Naive T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*01:01 B2M MHCI -14226 chip0516_632028 -2.26 10.76 Chip4 healthy_7 healthy _ 6746 4156 PGT-178 PGT 0.75 1480 NEG 107 4049 3 HomoSapiens PGT LLAGIGTVPI Naive T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*02:01 B2M MHCI -14227 chip0516_634057 -3.52 10.15 Chip4 healthy_8 healthy TGTGCTGTGAGAGTTTTATACAACTTCAACAAATTTTACTTT CAVRVLYNFNKFYF TRAV3*01 TRAJ21*01 22.0 1397.0 TGTGCCAGCAGCTTGCAACGGGACAGGGTCTACGAGCAGTACTTC CASSLQRDRVYEQYF TRBV5-6*01 TRBJ2-7*01 19.0 1304.0 CAVRVLYNFNKFYF_CASSLQRDRVYEQYF 1 5232 LMP2A-CPL EBV 0.73 44 NEG 86 5146 2 EBV LMP2A CPLSKILL Naive T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-B*08:01 B2M MHCI -14228 chip0516_18656 11.61 7.62 Chip4 healthy_8 healthy TGCATCCTGCCCCTTGCTGGTGGTACTAGCTATGGAAAGCTGACATTT CILPLAGGTSYGKLTF TRAV26-2*01 TRAJ52*01 15.0 739.0 TGTGCCAGCAGCTTAGGACAGGCCTACGAGCAGTACTTC CASSLGQAYEQYF TRBV7-8*01 TRBJ2-7*01 5.0 372.0 CILPLAGGTSYGKLTF_CASSLGQAYEQYF 308 6456 EBNA3A-193-201 EBV 0.92 1022 EBNA3A-193-201 104 6352 10 EBV EBNA3A FLRGRAYGL effector memory T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-B*08:01 B2M MHCI -14229 chip0516_97150 11.71 8.16 Chip4 healthy_6 healthy TGTGCTGTTCTAATGGATAGCAACTATCGGTTAATCTGG CAVLMDSNYRLIW TRAV21*01 TRAJ33*01 21.0 1151.0 TGCGCCAGCAGCGGGGACGGAATGAACACTGAAGCTTTCTTT CASSGDGMNTEAFF TRBV10-2*01 TRBJ1-1*01 11.0 474.0 CAVLMDSNYRLIW_CASSGDGMNTEAFF 1 5401 EBV-LMP2A EBV 0.91 700 EBV-LMP2A 109 5292 10 EBV LMP2A CLGGLLTMV effector memory T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*02:01 B2M MHCI -14230 chip0516_629173 10.54 10.36 Chip4 healthy_6 healthy _ 6746 4618 EBV-LMP2A EBV 1.0 700 EBV-LMP2A 100 4518 9 EBV LMP2A CLGGLLTMV effector memory T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*02:01 B2M MHCI -14231 chip0516_531739 -3.14 8.47 Chip4 healthy_8 healthy TGTGCTGTTTGGCCTTCCGGGTATGCACTCAACTTC CAVWPSGYALNF TRAV1-2*01 TRAJ41*01 19.0 1196.0 TGTGTTGTGAGTGATATTAGTCAATGCAGGCAACATGCTCACCTTT CVVSDISca??atAGNMLTF TRAV8-2*01 TRAJ39*01 20.0 832.0 0.47 TGCGCCAGCAGCCAAAGTGGAGGGGAGAACAATGAGCAGTTCTTC CASSQSGGENNEQFF TRBV4-1*01 TRBJ2-1*01 34.0 2196.0 CAVWPSGYALNF_CASSQSGGENNEQFF 1 4989 INS-WMR-8 INS 0.62 17 NEG 87 4902 2 HomoSapiens INS WMRLLPLL Naive T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-B*08:01 B2M MHCI -14232 chip0516_404884 10.84 11.74 Chip4 healthy_6 healthy _ 6746 4766 EBV-LMP2A EBV 0.92 700 EBV-LMP2A 93 4673 9 EBV LMP2A CLGGLLTMV effector memory T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*02:01 B2M MHCI -14233 chip0516_711194 9.78 9.88 Chip4 healthy_6 healthy TGTGCTGTTCTAATGGATAGCAACTATCAGTTAATCTGG CAVLMDSNYQLIW TRAV21*01 TRAJ33*01 4.0 147.0 CAVLMDSNYQLIW_ 20 5934 EBV-LMP2A EBV 0.94 700 EBV-LMP2A 103 5831 9 EBV LMP2A CLGGLLTMV effector memory T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*02:01 B2M MHCI -14234 chip0516_243462 11.79 8.17 Chip4 healthy_7 healthy TGCAGCGTTGGAGAAGTTGGTTACGAGCAGTACTTC CSVGEVGYEQYF TRBV29-1*01 TRBJ2-7*01 38.0 3039.0 _CSVGEVGYEQYF 1 3812 ZNT8-115-123 ZNT8 0.61 74 ZNT8-115-123 83 3729 10 HomoSapiens ZNT8 LLSLFSLWL effector memory T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*02:01 B2M MHCI -14235 chip0516_132224 -2.7 10.27 Chip4 healthy_6 healthy TGTGCCAGCAGCCAAGTGTTCAGGACAGGATTGAACGAGCAGTACTTC CASSQVFRTGLNEQYF TRBV3-1*01 TRBJ2-7*01 30.0 1988.0 _CASSQVFRTGLNEQYF 1 4484 MART1-ALA MART1 1.0 269 NEG 82 4402 3 HomoSapiens MART1 ALAGIGILTV Naive T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*02:01 B2M MHCI -14236 chip0516_242906 11.4 8.02 Chip4 healthy_6 healthy TGCGCCAGCAGCGGGGACGGAATGAACACTGAAGCTTTCTTT CASSGDGMNTEAFF TRBV10-2*01 TRBJ1-1*01 26.0 1661.0 _CASSGDGMNTEAFF 131 5357 EBV-LMP2A EBV 0.92 700 EBV-LMP2A 92 5265 10 EBV LMP2A CLGGLLTMV effector memory T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*02:01 B2M MHCI -14237 chip0516_727932 13.86 8.09 Chip4 healthy_6 healthy _ 6746 2986 EBV-BRLF1 EBV 0.9 1264 NEG 98 2888 10 EBV BRLF1 YVLDHLIVV effector memory T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*02:01 B2M MHCI -14238 chip0516_470342 11.2 12.43 Chip4 healthy_6 healthy TGTGCTGTGGCCCTCTCAAGCAAATCAACCTTT CAVALSSKSTF TRAV8-3*01 TRAJ27*01 7.0 513.0 TGCGCCAGCAGCGGGGACGGAATGAACACTGAAGCTTTCTTT CASSGDGMNTEAFF TRBV10-2*01 TRBJ1-1*01 9.0 419.0 CAVALSSKSTF_CASSGDGMNTEAFF 50 3719 EBV-LMP2A EBV 1.0 700 EBV-LMP2A 86 3633 11 EBV LMP2A CLGGLLTMV effector T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*02:01 B2M MHCI -14239 chip0516_401390 -3.61 11.86 Chip4 healthy_8 healthy TGTGCATCCTTTCATGCTGGCAACAACCGTAAGCTGATTTGG CASFHAGNNRKLIW TRAV13-1*01 TRAJ38*01 1.0 30.0 TGCATCCTGAGAGTCCTATTAACACCAATGCAGGCAAATCAACCTTT CILRVLLac?TNAGKSTF TRAV26-2*01 TRAJ27*01 3.0 55.0 0.75 CASFHAGNNRKLIW_ 1 5927 GAD2-RMM-9 GAD65 0.94 9 GAD2-RMM-9 79 5848 1 HomoSapiens GAD2 RMMEYGTTM Naive T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-B*08:01 B2M MHCI -14240 chip0516_50082 10.23 9.37 Chip4 healthy_8 healthy TGTGCAGCAAGCGCCCGCTAACCAGTTCTATTTT CAASAcg??ctNQFYF TRAV29/DV5*01 TRAJ49*01 6.0 465.0 TGTGCCAGCAGCACCCAGACAGCGCCTGATGATACGCAGTATTTT CASSTQTAPDDTQYF TRBV7-9*01 TRBJ2-3*01 10.0 506.0 CAASAcg??ctNQFYF_CASSTQTAPDDTQYF 1 5887 BZLF1-190-197 EBV 0.74 2156 BZLF1-190-197 115 5772 8 EBV BZLF1 RAKFKQLL effector memory T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-B*08:01 B2M MHCI -14241 chip0516_249399 11.26 10.15 Chip4 healthy_8 healthy TGTGCCAGCAGCTTAGGACAGGCCTACGAGCAGTACTTC CASSLGQAYEQYF TRBV7-8*01 TRBJ2-7*01 9.0 454.0 _CASSLGQAYEQYF 175 5827 EBNA3A-193-201 EBV 0.51 1022 EBNA3A-193-201 104 5723 9 EBV EBNA3A FLRGRAYGL effector memory T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-B*08:01 B2M MHCI -14242 chip0516_779846 -2.06 9.38 Chip4 healthy_9 healthy _ 6746 4528 Gag260-267 HIV 0.78 10 Gag260-267 107 4421 3 HIV-1 Gag EIYKRWII Naive T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-B*08:01 B2M MHCI -14243 chip0516_146494 15.9 10.05 Chip4 healthy_9 healthy _ 6746 4081 EBNA3A-158-166 EBV 0.62 444 NEG 100 3981 12 EBV EBNA3A QAKWRLQTL effector T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-B*08:01 B2M MHCI -14244 chip0516_105002 12.27 8.48 Chip4 healthy_8 healthy TGCATCCTGCCCCTTGCTGGTGGTACTAGCTATGGAAAGCTGACATTT CILPLAGGTSYGKLTF TRAV26-2*01 TRAJ52*01 30.0 1916.0 CILPLAGGTSYGKLTF_ 55 4226 EBNA3A-193-201 EBV 0.84 1022 EBNA3A-193-201 105 4121 10 EBV EBNA3A FLRGRAYGL effector memory T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-B*08:01 B2M MHCI -14245 chip0516_820162 -3.97 10.54 Chip4 healthy_7 healthy TGTGCCGTCACAGGCACTGCCAGTCCACTCACCTTT CAVTGTASPLTF TRAV12-2*01 TRAJ44*01 7.0 481.0 CAVTGTASPLTF_ 1 5038 MART1-ALA MART1 0.83 269 MART1-ALA 85 4953 2 HomoSapiens MART1 ALAGIGILTV Naive T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*02:01 B2M MHCI -14246 chip0516_594379 6.41 14.23 Chip4 healthy_7 healthy TGTGCCAGCAGTTTAAGGTTCGGGACAGGGGTCGAAAAACTGTTTTTT CASSLRFGTGVEKLFF TRBV28*01 TRBJ1-4*01 26.0 1014.0 _CASSLRFGTGVEKLFF 1 4810 PTPRN-180-188 PTPRN 0.41 18 NEG 120 4690 7 HomoSapiens PTPRN LLPPLLEHL transitional T cells between effector and memory populations PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*02:01 B2M MHCI -14247 chip0516_13841 -3.78 8.82 Chip4 healthy_7 healthy TGCAGTGCTATCTTTATAGGCCTAGCGGGCGGTGAGCAGTTCTTC CSAIFIGLAGGEQFF TRBV20-1*01 TRBJ2-1*01 40.0 3523.0 _CSAIFIGLAGGEQFF 1 4824 GAG-77-86 HIV 0.83 15 NEG 98 4726 2 HIV-1 GAG SLYNTVATLY Naive T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*02:01 B2M MHCI -14248 chip0516_842782 11.2 7.53 Chip4 healthy_8 healthy TGCATCCTGCCCCTTGCTGGGGGTACTTGCTATGGCGCGCTGACATTC CILPLAGGTCYGALTF TRAV26-2*01 TRAJ52*01 8.0 364.0 TGTGCCAGCAGCTTAGGACAGGCCTACGAGCAGTACTTC CASSLGQAYEQYF TRBV7-8*01 TRBJ2-7*01 1.0 43.0 CILPLAGGTCYGALTF_CASSLGQAYEQYF 1 6997 EBNA3A-193-201 EBV 0.74 1022 EBNA3A-193-201 97 6900 10 EBV EBNA3A FLRGRAYGL effector memory T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-B*08:01 B2M MHCI -14249 chip0516_516736 11.54 13.05 Chip4 healthy_8 healthy TGTGCCGTGAAGACGGACACCAATGCAGGCAAATCAACCTTT CAVKTDTNAGKSTF TRAV12-2*01 TRAJ27*01 5.0 154.0 CAVKTDTNAGKSTF_ 20 4637 EBNA3A-193-201 EBV 0.83 1022 EBNA3A-193-201 84 4553 11 EBV EBNA3A FLRGRAYGL effector T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-B*08:01 B2M MHCI -14250 chip0516_323061 10.55 9.17 Chip4 healthy_6 healthy _ 6746 8264 EBV-LMP2A EBV 0.92 700 EBV-LMP2A 107 8157 10 EBV LMP2A CLGGLLTMV effector memory T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*02:01 B2M MHCI -14251 chip0516_290561 10.56 10.49 Chip4 healthy_6 healthy TGCACCAGCAGCGGGGACGGGATGAACCCTGAAGCTCTCTGT CTSSGDGMNPEALC TRBV10-2*01 TRBJ1-1*01 2.0 386.0 _CTSSGDGMNPEALC 1 4971 EBV-LMP2A EBV 1.0 700 EBV-LMP2A 98 4873 9 EBV LMP2A CLGGLLTMV effector memory T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*02:01 B2M MHCI -14252 chip0516_798 -3.16 11.52 Chip4 healthy_8 healthy _ 6746 4656 EBNA3A-193-201 EBV 0.71 1022 NEG 84 4572 1 EBV EBNA3A FLRGRAYGL Naive T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-B*08:01 B2M MHCI -14253 chip0516_701834 11.26 10.63 Chip4 healthy_6 healthy _ 6746 5786 EBV-LMP2A EBV 1.0 700 EBV-LMP2A 84 5702 9 EBV LMP2A CLGGLLTMV effector memory T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*02:01 B2M MHCI -14254 chip0516_487411 6.42 11.48 Chip4 healthy_8 healthy _ 6746 7825 NP44-52 FLU 0.83 474 NP44-52 83 7742 7 InfluenzaA NP CTELKLSDY transitional T cells between effector and memory populations PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*01:01 B2M MHCI -14255 chip0516_302281 -3.21 9.45 Chip4 healthy_6 healthy TGCAGTGCTGGTTGGAGGGATTTGAACACTGAAGCTTTCTTT CSAGWRDLNTEAFF TRBV20-1*01 TRBJ1-1*01 3.0 65.0 _CSAGWRDLNTEAFF 1 6357 M1 FLU 0.58 1250 NEG 81 6276 2 InfluenzaA M1 GILGFVFTL Naive T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*02:01 B2M MHCI -14256 chip0516_122219 -1.91 9.88 Chip4 healthy_9 healthy TGTGCCCTGAGAGCGGCCGAGGCTTT CALRg?cGRGF TRAV14/DV4*01 TRAJ11*01,TRAJ14*01 2.0 4.0 TGTGCCAGCAGTGAAGGACAGGCTCCTAACTATGGCTACACCTTC CASSEGQAPNYGYTF TRBV2*01 TRBJ1-2*01 1.0 11.0 CALRg?cGRGF_CASSEGQAPNYGYTF 1 7700 G6PC2-NLI-8 IGRP 0.87 32 G6PC2-NLI-8 78 7622 3 HomoSapiens G6PC2 NLIFKWIL Naive T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-B*08:01 B2M MHCI -14257 chip0516_671949 12.83 7.2 Chip4 healthy_8 healthy TGCATCCTGCCCCTTGCTGGTGGTACTAGCTATGGAAAGCTGACATTT CILPLAGGTSYGKLTF TRAV26-2*01 TRAJ52*01 19.0 1300.0 TGTGCCCGCAGCTTAGGACCGGCCTACGAGCAGTACTTC CARSLGPAYEQYF TRBV7-8*01 TRBJ2-7*01 12.0 604.0 CILPLAGGTSYGKLTF_CARSLGPAYEQYF 1 4015 EBNA3A-193-201 EBV 0.84 1022 EBNA3A-193-201 141 3874 10 EBV EBNA3A FLRGRAYGL effector memory T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-B*08:01 B2M MHCI -14258 chip0516_869474 9.53 10.8 Chip4 healthy_8 healthy _ 6746 5483 EBNA3A-158-166 EBV 0.89 444 EBNA3A-158-166 92 5391 9 EBV EBNA3A QAKWRLQTL effector memory T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-B*08:01 B2M MHCI -14259 chip0516_486468 11.64 12.68 Chip4 healthy_6 healthy TGCAGTGCTAGAGACAGGGTTGGAAATGGCTACACCTTC CSARDRVGNGYTF TRBV20-1*01 TRBJ1-2*01 10.0 372.0 _CSARDRVGNGYTF 6 3892 EBV-BLMF1 EBV 0.96 2531 EBV-BLMF1 114 3778 11 EBV BLMF1 GLCTLVAML effector T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*02:01 B2M MHCI -14260 chip0516_66450 10.24 9.97 Chip4 healthy_6 healthy _ 6746 6541 EBV-LMP2A EBV 0.87 700 EBV-LMP2A 122 6419 9 EBV LMP2A CLGGLLTMV effector memory T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*02:01 B2M MHCI -14261 chip0516_665261 11.71 8.14 Chip4 healthy_6 healthy TGCGCCAGCAGCGGGGACGGAATGAACACTGAAGCTTTCTTT CASSGDGMNTEAFF TRBV10-2*01 TRBJ1-1*01 1.0 47.0 _CASSGDGMNTEAFF 131 5129 EBV-LMP2A EBV 0.89 700 EBV-LMP2A 98 5031 10 EBV LMP2A CLGGLLTMV effector memory T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*02:01 B2M MHCI -14262 chip0516_422214 8.04 11.46 Chip4 healthy_8 healthy TGTGCCAGCAGTTTAATGGGGACAGGGGGCTTGAGTGAAAAACTGTTTTTT CASSLMGTGGLSEKLFF TRBV28*01 TRBJ1-4*01 45.0 1789.0 _CASSLMGTGGLSEKLFF 18 5463 EBNA3A-158-166 EBV 0.52 444 EBNA3A-158-166 95 5368 7 EBV EBNA3A QAKWRLQTL transitional T cells between effector and memory populations PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-B*08:01 B2M MHCI -14263 chip0516_804639 12.03 8.74 Chip4 healthy_6 healthy TGTGCTGTTCTAATGGATAGCAACTATCAGTTAATCTGG CAVLMDSNYQLIW TRAV21*01 TRAJ33*01 14.0 850.0 CAVLMDSNYQLIW_ 20 4173 EBV-LMP2A EBV 0.61 700 EBV-LMP2A 93 4080 10 EBV LMP2A CLGGLLTMV effector memory T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*02:01 B2M MHCI -14264 chip0516_91941 10.29 10.48 Chip4 healthy_6 healthy TGTGCTGTGGCCCTCTCAAGCAAATCAACCTTT CAVALSSKSTF TRAV8-3*01 TRAJ27*01 2.0 61.0 CAVALSSKSTF_ 58 5022 EBV-LMP2A EBV 1.0 700 EBV-LMP2A 94 4928 9 EBV LMP2A CLGGLLTMV effector memory T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*02:01 B2M MHCI -14265 chip0516_797679 12.45 13.38 Chip4 healthy_8 healthy TGTGCAGCAACCTTTTATGGAGGAAGCCAAGGAAATCTCATCTTT CAATFYGGSQGNLIF TRAV29/DV5*01 TRAJ42*01 35.0 1969.0 TGTGCCAGCAGCACCCAGACAGCGCCTGATGATACGCAGTATTTT CASSTQTAPDDTQYF TRBV7-9*01 TRBJ2-3*01 8.0 261.0 CAATFYGGSQGNLIF_CASSTQTAPDDTQYF 3 2035 BZLF1-190-197 EBV 0.65 2156 BZLF1-190-197 88 1947 11 EBV BZLF1 RAKFKQLL effector T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-B*08:01 B2M MHCI -14266 chip0516_102470 6.89 13.7 Chip4 healthy_7 healthy _ 6746 3170 M1 FLU 1.0 1250 NEG 91 3079 7 InfluenzaA M1 GILGFVFTL transitional T cells between effector and memory populations PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*02:01 B2M MHCI -14267 chip0516_655293 10.73 11.21 Chip4 healthy_6 healthy _ 6746 4459 EBV-LMP2A EBV 0.88 700 EBV-LMP2A 98 4361 9 EBV LMP2A CLGGLLTMV effector memory T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*02:01 B2M MHCI -14268 chip0516_526986 6.26 14.04 Chip4 healthy_6 healthy TGCAGCGTTGAAATTGGGGGGTACAATGAGCAGTTCTTC CSVEIGGYNEQFF TRBV29-1*01 TRBJ2-1*01 75.0 5271.0 _CSVEIGGYNEQFF 3 4187 ROTA-VP2-1 ROTA 0.96 17 ROTA-VP2-1 81 4106 7 RotavirusA VP2 SLISGMWLL transitional T cells between effector and memory populations PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*02:01 B2M MHCI -14269 chip0516_880462 10.18 9.73 Chip4 healthy_6 healthy TGCGCCAGCAGCGGGGACGGAATGAACACTGAAGCTTTCTTT CASSGDGMNTEAFF TRBV10-2*01 TRBJ1-1*01 21.0 1716.0 _CASSGDGMNTEAFF 131 7365 EBV-LMP2A EBV 0.88 700 EBV-LMP2A 93 7272 9 EBV LMP2A CLGGLLTMV effector memory T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*02:01 B2M MHCI -14270 chip0516_494635 11.31 12.71 Chip4 healthy_6 healthy TGCGCCAGCAGCGGGGACGGAATGAACGCTGAAGCTTTCTTT CASSGDGMNAEAFF TRBV10-2*01 TRBJ1-1*01 21.0 1528.0 _CASSGDGMNAEAFF 1 3078 EBV-LMP2A EBV 0.9 700 NEG 98 2980 11 EBV LMP2A CLGGLLTMV effector T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*02:01 B2M MHCI -14271 chip0516_221975 11.43 10.98 Chip4 healthy_8 healthy _ 6746 4711 BZLF1-190-197 EBV 0.94 2156 BZLF1-190-197 105 4606 9 EBV BZLF1 RAKFKQLL effector memory T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-B*08:01 B2M MHCI -14272 chip0516_169735 -3.65 14.04 Chip4 healthy_7 healthy TGTGCAATGATGGGTTCTAACTTTGGAAATGAGAAATTAACCTTT CAMMGSNFGNEKLTF TRAV12-3*01 TRAJ48*01 1.0 25.0 CAMMGSNFGNEKLTF_ 1 2602 PGT-178 PGT 0.75 1480 NEG 97 2505 1 HomoSapiens PGT LLAGIGTVPI Naive T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*02:01 B2M MHCI -14273 chip0516_72589 5.28 10.54 Chip4 healthy_9 healthy TGTGCCAGCAGCTTAAACCGGGACAGGGGCCCCTGGGAGCAGTACTTC CASSLNRDRGPWEQYF TRBV5-6*01 TRBJ2-7*01 5.0 382.0 _CASSLNRDRGPWEQYF 1 4760 EBNA3A-158-166 EBV 0.76 444 EBNA3A-158-166 79 4681 6 EBV EBNA3A QAKWRLQTL central memory T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-B*08:01 B2M MHCI -14274 chip0516_461618 5.43 12.83 Chip4 healthy_7 healthy TGTGCCAGTAGTCTGCGGTCAGGCGGGCTAGAGTACTTC CASSLRSGGLEYF TRBV19*01 TRBJ2-7*01 14.0 874.0 _CASSLRSGGLEYF 1 5523 M1 FLU 0.92 1250 M1 99 5424 7 InfluenzaA M1 GILGFVFTL transitional T cells between effector and memory populations PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*02:01 B2M MHCI -14275 chip0516_278406 11.82 12.35 Chip4 healthy_6 healthy _ 6746 3241 EBV-LMP2A EBV 0.96 700 EBV-LMP2A 88 3153 11 EBV LMP2A CLGGLLTMV effector T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*02:01 B2M MHCI -14276 chip0516_229906 12.29 9.64 Chip4 healthy_6 healthy _ 6746 5220 CVB3-P3A CVB 0.88 77 CVB3-P3A 95 5125 10 CoxsackievirusB P3A GIIYIIYKL effector memory T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*02:01 B2M MHCI -14277 chip0516_188625 11.97 8.25 Chip4 healthy_8 healthy TGTGCCAGCAGCTTAGGACAGGCCTACGAGCAGTACTTC CASSLGQAYEQYF TRBV7-8*01 TRBJ2-7*01 9.0 596.0 _CASSLGQAYEQYF 175 3908 EBNA3A-193-201 EBV 0.42 1022 EBNA3A-193-201 104 3804 10 EBV EBNA3A FLRGRAYGL effector memory T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-B*08:01 B2M MHCI -14278 chip0516_683306 5.14 10.02 Chip4 healthy_8 healthy TGTGCCAGCAGCTTAGGACAGGCCTACGAGCAGTACTTC CASSLGQAYEQYF TRBV7-8*01 TRBJ2-7*01 17.0 1015.0 _CASSLGQAYEQYF 175 6208 EBNA3A-193-201 EBV 0.81 1022 EBNA3A-193-201 78 6130 6 EBV EBNA3A FLRGRAYGL central memory T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-B*08:01 B2M MHCI -14279 chip0516_490308 -3.48 9.67 Chip4 healthy_9 healthy _ 6746 3812 ZNT8-PTE-9 ZNT8 0.9 18 ZNT8-PTE-9 104 3708 2 HomoSapiens ZNT8 PTEKGANEY Naive T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*01:01 B2M MHCI -14280 chip0516_656317 5.66 13.41 Chip4 healthy_7 healthy TGTGCCAGTAGTGGCAGGGCCACCGGGGAGCTGTTTTTT CASSGRATGELFF TRBV19*01 TRBJ2-2*01 8.0 589.0 _CASSGRATGELFF 1 5347 M1 FLU 0.96 1250 M1 105 5242 7 InfluenzaA M1 GILGFVFTL transitional T cells between effector and memory populations PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*02:01 B2M MHCI -14281 chip0516_90856 -2.97 11.81 Chip4 healthy_7 healthy TGCGCCGGCAGCTTGGCGGGGGGGAATTCACCCCTCCACTTT CAGSLAGGNSPLHF TRBV5-1*01 TRBJ1-6*01 29.0 1996.0 _CAGSLAGGNSPLHF 1 3992 ZNT8-173-181 ZNT8 0.8 27 NEG 92 3900 1 HomoSapiens ZNT8 IQATVMIIV Naive T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*02:01 B2M MHCI -14282 chip0516_96634 10.88 8.9 Chip4 healthy_6 healthy TGCGCCAGCAGCGGGGACGGAATGAACACTGAAGCTTTCTTT CASSGDGMNTEAFF TRBV10-2*01 TRBJ1-1*01 15.0 601.0 _CASSGDGMNTEAFF 131 5403 EBV-LMP2A EBV 0.91 700 EBV-LMP2A 88 5315 10 EBV LMP2A CLGGLLTMV effector memory T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*02:01 B2M MHCI -14283 chip0516_744443 -1.9 8.89 Chip4 healthy_8 healthy TGTGCCAGCAGTCAATTCGACCTCGGGGCCGGAGATACGCAGTATTTT CASSQFDLGAGDTQYF TRBV3-1*01 TRBJ2-3*01 23.0 1182.0 _CASSQFDLGAGDTQYF 1 6854 ZNT8-YAY-8 ZNT8 0.73 54 NEG 87 6767 3 HomoSapiens ZNT8 YAYAKWKL Naive T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-B*08:01 B2M MHCI -14284 chip0516_251407 11.41 8.36 Chip4 healthy_6 healthy _ 6746 4317 EBV-BRLF1 EBV 1.0 1264 NEG 90 4227 10 EBV BRLF1 YVLDHLIVV effector memory T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*02:01 B2M MHCI -14285 chip0516_85197 -2.05 12.68 Chip4 healthy_9 healthy TGTGCTGTTACTCCCCACACTAATGCTGGTGGTACTAGCTATGGAAAGCTGACATTT CAVTPHTNAGGTSYGKLTF TRAV8-3*01 TRAJ52*01 15.0 711.0 TGTGCCAGCAGCCCAACCGGGACAGGGTTGCGCGGCTACACCTTC CASSPTGTGLRGYTF TRBV7-6*01 TRBJ1-2*01 7.0 576.0 CAVTPHTNAGGTSYGKLTF_CASSPTGTGLRGYTF 1 3786 G6PC2-NLI-8 IGRP 0.57 32 NEG 85 3701 1 HomoSapiens G6PC2 NLIFKWIL Naive T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-B*08:01 B2M MHCI -14286 chip0516_38824 -2.63 8.17 Chip4 healthy_9 healthy TGTGCCAGCAGCCAACCGGGATTGAACACTGAAGCTTTCTTT CASSQPGLNTEAFF TRBV5-4*01 TRBJ1-1*01 13.0 632.0 _CASSQPGLNTEAFF 1 7284 NP140-148 FLU 0.65 102 NP140-148 85 7199 2 InfluenzaA NP HSNLNDATY Naive T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*01:01 B2M MHCI -14287 chip0516_807107 -0.8 9.66 Chip4 healthy_6 healthy _ 6746 6931 PGT-178 PGT 0.68 1480 PGT-178 83 6848 3 HomoSapiens PGT LLAGIGTVPI Naive T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*02:01 B2M MHCI -14288 chip0516_698832 9.45 10.96 Chip4 healthy_8 healthy TGCATCCTGCCCCTTGCTGGTGGTACTAGCTATGGAAAGCTGACATTT CILPLAGGTSYGKLTF TRAV26-2*01 TRAJ52*01 2.0 76.0 TGTGCCAGCAGCTTAGGACAGGCCTACGAGCAGTACTTC CASSLGQAYEQYF TRBV7-8*01 TRBJ2-7*01 25.0 1642.0 CILPLAGGTSYGKLTF_CASSLGQAYEQYF 308 6271 EBNA3A-193-201 EBV 0.84 1022 EBNA3A-193-201 84 6187 9 EBV EBNA3A FLRGRAYGL effector memory T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-B*08:01 B2M MHCI -14289 chip0516_503409 10.28 10.21 Chip4 healthy_6 healthy _ 6746 5885 EBV-LMP2A EBV 0.93 700 EBV-LMP2A 94 5791 9 EBV LMP2A CLGGLLTMV effector memory T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*02:01 B2M MHCI -14290 chip0516_441774 -4.56 8.97 Chip4 healthy_7 healthy TGTGTGGTGAGCCCATCTAACTTTGGAAATGAGAAATTAACCTTT CVVSPSNFGNEKLTF TRAV12-1*01 TRAJ48*01 1.0 30.0 TGCAGTGCTAGAGCGTCTCTCTCGATGAGCACTGAAGCTTTCTTT CSARASLSMSTEAFF TRBV20-1*01 TRBJ1-1*01 42.0 3296.0 CVVSPSNFGNEKLTF_CSARASLSMSTEAFF 1 5036 PGT-178 PGT 0.64 1480 PGT-178 75 4961 2 HomoSapiens PGT LLAGIGTVPI Naive T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*02:01 B2M MHCI -14291 chip0516_408435 11.34 10.92 Chip4 healthy_6 healthy TGTGCTGTTCTAATGGATAGCAACTATCAGTTAATCTGG CAVLMDSNYQLIW TRAV12-3*01,TRAV21*01 TRAJ33*01 31.0 2064.0 CAVLMDSNYQLIW_ 20 4500 EBV-LMP2A EBV 1.0 700 EBV-LMP2A 91 4409 9 EBV LMP2A CLGGLLTMV effector memory T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*02:01 B2M MHCI -14292 chip0516_36098 5.69 12.8 Chip4 healthy_7 healthy _ 6746 8283 M1 FLU 0.96 1250 M1 91 8192 7 InfluenzaA M1 GILGFVFTL transitional T cells between effector and memory populations PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*02:01 B2M MHCI -14293 chip0516_559267 11.24 12.36 Chip4 healthy_6 healthy TGCGCCAGCAGCGGGGACGGAATGAACACTGAAGCTTTCTTT CASSGDGMNTEAFF TRBV10-2*01 TRBJ1-1*01 16.0 821.0 _CASSGDGMNTEAFF 131 4085 EBV-LMP2A EBV 0.92 700 EBV-LMP2A 83 4002 11 EBV LMP2A CLGGLLTMV effector T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*02:01 B2M MHCI -14294 chip0516_489839 -2.49 14.18 Chip4 healthy_9 healthy _ 6746 3327 GAD2-EAK-10 GAD65 0.47 14 NEG 106 3221 1 HomoSapiens GAD2 EAKQKGFVPF Naive T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-B*08:01 B2M MHCI -14295 chip0516_694822 9.94 10.17 Chip4 healthy_8 healthy _ 6746 5482 EBNA3A-158-166 EBV 0.52 444 EBNA3A-158-166 97 5385 9 EBV EBNA3A QAKWRLQTL effector memory T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-B*08:01 B2M MHCI -14296 chip0516_479122 -4.68 9.71 Chip4 healthy_7 healthy TGTGCCGTGAAGGGTGGGGAGCTTATCTTC CAVKGGELIF TRAV12-2*01 TRAJ23*01 2.0 274.0 TGCAGCTTAGAGGGGGGCACTGAAGCCTCCTTT CSLEGGTEASF TRBV29-1*01 TRBJ1-1*01 46.0 4987.0 CAVKGGELIF_CSLEGGTEASF 1 4879 PGT-178 PGT 0.6 1480 PGT-178 92 4787 2 HomoSapiens PGT LLAGIGTVPI Naive T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*02:01 B2M MHCI -14297 chip0516_357883 11.32 10.17 Chip4 healthy_6 healthy _ 6746 4701 EBV-LMP2A EBV 0.9 700 EBV-LMP2A 79 4622 9 EBV LMP2A CLGGLLTMV effector memory T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*02:01 B2M MHCI -14298 chip0516_23984 11.15 9.6 Chip4 healthy_8 healthy TGCATCTTGCCGATTGATGGCGGTACTAGCTATGCAAAGCTGCCATTT CILPIDGGTSYAKLPF TRAV26-2*01 TRAJ52*01 6.0 648.0 TGTGCCAGCAGCTTAGGACAGGCCTACGAGCAGTACTTC CASSLGQAYEQYF TRBV7-8*01 TRBJ2-7*01 3.0 132.0 CILPIDGGTSYAKLPF_CASSLGQAYEQYF 1 5987 EBNA3A-193-201 EBV 0.94 1022 EBNA3A-193-201 94 5893 9 EBV EBNA3A FLRGRAYGL effector memory T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-B*08:01 B2M MHCI -14299 chip0516_820980 -2.8 11.29 Chip4 healthy_6 healthy _ 6746 5286 MART1-ALA MART1 0.48 269 NEG 71 5215 1 HomoSapiens MART1 ALAGIGILTV Naive T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*02:01 B2M MHCI -14300 chip0516_67115 -1.58 8.94 Chip4 healthy_7 healthy TGTGCCAGCAGTTCCTCAGGGGGACAGAGCACAGATACGCAGTATTTT CASSSSGGQSTDTQYF TRBV12-3*01,TRBV12-4*01 TRBJ2-3*01 37.0 2400.0 _CASSSSGGQSTDTQYF 1 4771 INSDRIP-1-9 INS 0.9 8 NEG 93 4678 3 HomoSapiens INSDRIP MLYQHLLPL Naive T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*02:01 B2M MHCI -14301 chip0516_288829 11.78 8.0 Chip4 healthy_6 healthy _ 6746 4927 EBV-BRLF1 EBV 1.0 1264 NEG 90 4837 10 EBV BRLF1 YVLDHLIVV effector memory T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*02:01 B2M MHCI -14302 chip0516_814704 -2.67 8.9 Chip4 healthy_8 healthy TGTGCTGTGGGTTTAACCGGTAACCAGTTCTATTTT CAVGLTGNQFYF TRAV8-3*01 TRAJ49*01 2.0 109.0 CAVGLTGNQFYF_ 1 6838 ZNT8-YAK-9 ZNT8 0.69 59 NEG 97 6741 2 HomoSapiens ZNT8 YAKWKLCSA Naive T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-B*08:01 B2M MHCI -14303 chip0516_412513 5.8 9.57 Chip4 healthy_8 healthy TGCATCCTGCCCCTTGCTGGTGGTACTAGCTATGGAAAGCTGACATTT CILPLAGGTSYGKLTF TRAV26-2*01 TRAJ52*01 1.0 75.0 TGTGCCAGCAGCTCCGGACAGGCCTACGAGCAGTACTTC CASSSGQAYEQYF TRBV7-8*01 TRBJ2-7*01 16.0 782.0 CILPLAGGTSYGKLTF_CASSSGQAYEQYF 40 4689 EBNA3A-193-201 EBV 0.89 1022 EBNA3A-193-201 101 4588 6 EBV EBNA3A FLRGRAYGL central memory T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-B*08:01 B2M MHCI -14304 chip0516_697922 5.72 12.3 Chip4 healthy_8 healthy TGTGCCAGCAGCTTAGGACAGGCCTACGAGCAGTACTTC CASSLGQAYEQYF TRBV7-8*01 TRBJ2-7*01 12.0 751.0 _CASSLGQAYEQYF 175 6798 EBNA3A-193-201 EBV 0.93 1022 EBNA3A-193-201 102 6696 7 EBV EBNA3A FLRGRAYGL transitional T cells between effector and memory populations PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-B*08:01 B2M MHCI -14305 chip0516_322353 9.18 13.33 Chip4 healthy_8 healthy TGTGCCAGCAGCTTAGGACAGGCCTACGAGCAGTACTTC CASSLGQAYEQYF TRBV7-8*01 TRBJ2-7*01 49.0 3807.0 _CASSLGQAYEQYF 175 4074 EBNA3A-193-201 EBV 0.88 1022 EBNA3A-193-201 78 3996 6 EBV EBNA3A FLRGRAYGL central memory T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-B*08:01 B2M MHCI -14306 chip0516_875796 -3.55 11.37 Chip4 healthy_8 healthy TGTGCAATGAAAGAAACCAGTGGCTCTAGGTTGACCTTT CAMKETSGSRLTF TRAV14/DV4*01 TRAJ10*01 12.0 809.0 CAMKETSGSRLTF_ 1 4753 PTPRN-HAR-8 PTPRN 0.61 13 NEG 90 4663 1 HomoSapiens PTPRN HARIKLKV Naive T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-B*08:01 B2M MHCI -14307 chip0516_808374 11.96 7.77 Chip4 healthy_6 healthy _ 6746 4115 EBV-LMP2-FLY EBV 1.0 355 NEG 80 4035 10 EBV LMP2 FLYALALLL effector memory T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*02:01 B2M MHCI -14308 chip0516_288888 11.13 8.1 Chip4 healthy_6 healthy TGCGCCAGCAGCGGGGACGGGATGAACACTGAAGCTTTCTTT CASSGDGMNTEAFF TRBV10-2*01 TRBJ1-1*01 9.0 398.0 _CASSGDGMNTEAFF 131 5853 EBV-LMP2A EBV 0.84 700 EBV-LMP2A 86 5767 10 EBV LMP2A CLGGLLTMV effector memory T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*02:01 B2M MHCI -14309 chip0516_475071 12.24 9.63 Chip4 healthy_6 healthy _ 6746 4030 EBV-LMP2A EBV 0.95 700 EBV-LMP2A 114 3916 10 EBV LMP2A CLGGLLTMV effector memory T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*02:01 B2M MHCI -14310 chip0516_275136 8.12 10.29 Chip4 healthy_6 healthy TGTGCTCTGACTGAGGGCCCGGCCTGCCACACTCCTGTTT CALTEGcc??ggPATLLF TRAV19*01 TRAJ31*01 2.0 21.0 TGTGCCAGCAGCTCCTCTGCCGTCATCGGCGATGAGCAGTTCTTC CASSSSAVIGDEQFF TRBV11-2*01 TRBJ2-1*01 2.0 278.0 CALTEGcc??ggPATLLF_CASSSSAVIGDEQFF 1 7488 EBV-BRLF1 EBV 0.93 1264 EBV-BRLF1 100 7388 6 EBV BRLF1 YVLDHLIVV central memory T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*02:01 B2M MHCI -14311 chip0516_778146 -0.76 4.73 Chip4 healthy_8 healthy TGCATCGTTCGGAATTATGGAGGAAGCCAAGGAAATCTCATCTTT CIVRNYGGSQGNLIF TRAV26-1*01 TRAJ42*01 39.0 1877.0 TGTGCTGGACACCCTGGCATGTTTTCTGGTGGCTACAATAAGCTGATTTTT CAGHPGMFSGGYNKLIF TRAV21*01 TRAJ4*01 20.0 1054.0 0.25 CIVRNYGGSQGNLIF_ 1 7494 G6PC2-NLI-8 IGRP 0.89 32 G6PC2-NLI-8 76 7418 5 HomoSapiens G6PC2 NLIFKWIL natural killer-like T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-B*08:01 B2M MHCI -14312 chip0516_70732 11.18 9.62 Chip4 healthy_8 healthy TGTGCCGTGAAGACGGACACCAATGCAGGCAAATCAACCTTT CAVKTDTNAGKSTF TRAV12-2*01 TRAJ27*01 25.0 1585.0 CAVKTDTNAGKSTF_ 20 5867 EBNA3A-193-201 EBV 0.77 1022 EBNA3A-193-201 98 5769 9 EBV EBNA3A FLRGRAYGL effector memory T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-B*08:01 B2M MHCI -14313 chip0516_745135 11.44 10.77 Chip4 healthy_8 healthy TGTGCAATGAGGTGCCAGCCTCATGTTC CAMRtg??ccSLMF TRAV14/DV4*01 TRAJ31*01 9.0 1421.0 CAMRtg??ccSLMF_ 1 4337 EBNA3A-193-201 EBV 0.85 1022 EBNA3A-193-201 100 4237 9 EBV EBNA3A FLRGRAYGL effector memory T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-B*08:01 B2M MHCI -14314 chip0516_512784 -0.19 9.15 Chip4 healthy_9 healthy _ 6746 4615 EBNA3A-158-166 EBV 0.45 444 NEG 84 4531 4 EBV EBNA3A QAKWRLQTL Naive T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-B*08:01 B2M MHCI -14315 chip0516_372150 -2.44 15.09 Chip4 healthy_9 healthy TGTGCCAGCAGCTTAGGGGCAGGGACCGGGGAGACCCAGTACTTC CASSLGAGTGETQYF TRBV7-9*01 TRBJ2-5*01 17.0 1313.0 _CASSLGAGTGETQYF 1 2192 G6PC2-PTH-9 IGRP 0.67 7 NEG 73 2119 1 HomoSapiens G6PC2 PTHEEHLFY Naive T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*01:01 B2M MHCI -14316 chip0516_707812 12.78 7.88 Chip4 healthy_8 healthy TGCATCCTGCCCCTTGCTGGTGGTACTAGCTATGGAAAGCTGACTTTT CILPLAGGTSYGKLTF TRAV26-2*01 TRAJ52*01 9.0 366.0 TGTGCCAGCAGCTTAGGACAGGCCTACGAGCAGTACTTC CASSLGQAYEQYF TRBV7-8*01 TRBJ2-7*01 13.0 787.0 CILPLAGGTSYGKLTF_CASSLGQAYEQYF 308 3955 EBNA3A-193-201 EBV 0.82 1022 EBNA3A-193-201 100 3855 10 EBV EBNA3A FLRGRAYGL effector memory T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-B*08:01 B2M MHCI -14317 chip0516_746842 -3.42 9.56 Chip4 healthy_8 healthy TGTGCTTATAGGAGCCCGGACTCTTACAATAACAATGACATGCGCTTT CAYRSPDSYNNNDMRF TRAV38-2/DV8*01 TRAJ43*01 1.0 11.0 CAYRSPDSYNNNDMRF_ 1 5136 PB1-590-599 FLU 0.64 37 NEG 82 5054 2 InfluenzaA PB1 LVSDGGPNLY Naive T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*01:01 B2M MHCI -14318 chip0516_193987 -3.39 12.26 Chip4 healthy_8 healthy TGTGCTTTCCTCGGTACTAGCTATGGAAAGCTGACATTT CAFLGTSYGKLTF TRAV38-1*01 TRAJ52*01 18.0 1764.0 TGTGCCAGCAGCCTCTCGCCAGACAGGAACCCCTATGGCTACACCTTC CASSLSPDRNPYGYTF TRBV11-1*01 TRBJ1-2*01 22.0 1220.0 CAFLGTSYGKLTF_CASSLSPDRNPYGYTF 1 4461 Nef13-20 HIV 0.67 19 Nef13-20 87 4374 1 HIV-1 Nef WPTVRERM Naive T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-B*08:01 B2M MHCI -14319 chip0516_543651 12.64 13.29 Chip4 healthy_6 healthy _ 6746 2215 EBV-BRLF1 EBV 0.86 1264 NEG 87 2128 11 EBV BRLF1 YVLDHLIVV effector T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*02:01 B2M MHCI -14320 chip0516_150108 -4.13 8.86 Chip4 healthy_8 healthy TGTGCTGGCCCATGGTGGTGCTACACACAAGCTCATCTTT CAGPWWtg??ctTHKLIF TRAV35*01 TRAJ32*01 11.0 583.0 TGTGCCAGCAGCTTAGGGACAGGGGGGCTCGACTACGAGCAGTACTTC CASSLGTGGLDYEQYF TRBV7-9*01 TRBJ2-7*01 5.0 143.0 CAGPWWtg??ctTHKLIF_CASSLGTGGLDYEQYF 1 5954 NP140-148 FLU 0.67 102 NP140-148 86 5868 2 InfluenzaA NP HSNLNDATY Naive T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*01:01 B2M MHCI -14321 chip0516_215746 6.48 13.13 Chip4 healthy_9 healthy TGTGCCAGTAGTATGATTCCAGACATGAACACTGAAGCTTTCTTT CASSMIPDMNTEAFF TRBV19*01 TRBJ1-1*01 1.0 15.0 _CASSMIPDMNTEAFF 1 4251 NP30-38 FLU 0.53 72 NP30-38 70 4181 7 InfluenzaA NP RPIIRPATL transitional T cells between effector and memory populations PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-B*08:01 B2M MHCI -14322 chip0516_523628 12.17 8.65 Chip4 healthy_6 healthy _ 6746 4549 EBV-LMP2A EBV 1.0 700 EBV-LMP2A 78 4471 10 EBV LMP2A CLGGLLTMV effector memory T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*02:01 B2M MHCI -14323 chip0516_388150 10.44 10.2 Chip4 healthy_8 healthy TGTGCCGTGAAAGGGGACACCAATGCAAGCAAATCAACCTTT CAVKGDTNASKSTF TRAV12-2*01 TRAJ27*01 7.0 241.0 CAVKGDTNASKSTF_ 1 6298 EBNA3A-193-201 EBV 0.91 1022 EBNA3A-193-201 83 6215 9 EBV EBNA3A FLRGRAYGL effector memory T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-B*08:01 B2M MHCI -14324 chip0516_580174 10.88 10.93 Chip4 healthy_6 healthy _ 6746 5110 EBV-LMP2A EBV 0.91 700 EBV-LMP2A 97 5013 9 EBV LMP2A CLGGLLTMV effector memory T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*02:01 B2M MHCI -14325 chip0516_348284 -3.87 8.84 Chip4 healthy_8 healthy TGCGCTGTGAGAGAACGGAGAGACAAGATCATCTTT CAVRERRDKIIF TRAV1-1*01 TRAJ30*01 9.0 644.0 CAVRERRDKIIF_ 1 5093 GFAP-LRL-8 GFAP 0.7 18 NEG 86 5007 2 HomoSapiens GFAP LRLRLDQL Naive T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-B*08:01 B2M MHCI -14326 chip0516_633255 9.08 12.0 Chip4 healthy_6 healthy _ 6746 4344 ZNT8-115-123 ZNT8 1.0 74 ZNT8-115-123 92 4252 7 HomoSapiens ZNT8 LLSLFSLWL transitional T cells between effector and memory populations PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*02:01 B2M MHCI -14327 chip0516_558282 11.41 11.69 Chip4 healthy_8 healthy TGTGCCGTGAAGACGGACACCAATGCAGGCAAATCAACCTTT CAVKTDTNAGKSTF TRAV12-2*01 TRAJ27*01 19.0 1084.0 CAVKTDTNAGKSTF_ 20 3982 EBNA3A-193-201 EBV 0.88 1022 EBNA3A-193-201 98 3884 9 EBV EBNA3A FLRGRAYGL effector memory T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-B*08:01 B2M MHCI -14328 chip0516_391962 11.91 7.16 Chip4 healthy_6 healthy TGTGCTGTGGCCCTCTCAAGCAAATCAACCTTT CAVALSSKSTF TRAV8-3*01 TRAJ27*01 6.0 584.0 CAVALSSKSTF_ 58 7203 EBV-LMP2A EBV 0.98 700 EBV-LMP2A 80 7123 10 EBV LMP2A CLGGLLTMV effector memory T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*02:01 B2M MHCI -14329 chip0516_56891 -2.91 7.52 Chip4 healthy_8 healthy TGTGCCATCAGTGAGGGACTAGCGGGGGGTAACAATGAGCAGTTCTTC CAISEGLAGGNNEQFF TRBV10-3*01 TRBJ2-1*01 1.0 44.0 _CAISEGLAGGNNEQFF 1 7628 PB1-590-599 FLU 0.44 37 PB1-590-599 93 7535 2 InfluenzaA PB1 LVSDGGPNLY Naive T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*01:01 B2M MHCI -14330 chip0516_429854 -4.02 11.83 Chip4 healthy_8 healthy TGTGCAATGAGAGAGGGCAGCACCAATGCAGGCAAATCAACCTTT CAMREGSTNAGKSTF TRAV14/DV4*01 TRAJ27*01 78.0 4247.0 TGTGCCAGCAGTCCGGGGTCTGTGGCGTTTGGCTACACCTTC CASSPGSVAFGYTF TRBV27*01 TRBJ1-2*01 3.0 368.0 CAMREGSTNAGKSTF_CASSPGSVAFGYTF 1 4382 ZNT8-YAK-9 ZNT8 0.91 59 ZNT8-YAK-9 72 4310 1 HomoSapiens ZNT8 YAKWKLCSA Naive T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-B*08:01 B2M MHCI -14331 chip0516_393103 -3.54 12.39 Chip4 healthy_10 healthy TGCAGTGCTTCGGACAGGGAATCCTATGGCTACACCTCC CSASDRESYGYTS TRBV20-1*01 TRBJ1-2*01 6.0 647.0 _CSASDRESYGYTS 1 4059 NP44-52 FLU 0.59 474 NEG 99 3960 1 InfluenzaA NP CTELKLSDY Naive T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*01:01 B2M MHCI -14332 chip0516_404917 5.35 10.66 Chip4 healthy_6 healthy _ 6746 7943 EBV-LMP2A EBV 1.0 700 EBV-LMP2A 97 7846 6 EBV LMP2A CLGGLLTMV central memory T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*02:01 B2M MHCI -14333 chip0516_728830 10.31 8.74 Chip4 healthy_8 healthy TGCATCCTGCCCCTTGCTGGTGGTACTAGCTATGGAAAGCTGACATTT CILPLAGGTSYGKLTF TRAV26-2*01 TRAJ52*01 22.0 1208.0 TGTGCCAGCAGCTTAGGACAGGCCTACGAGCAGTACTTC CASSLGQAYEQYF TRBV7-8*01 TRBJ2-7*01 7.0 510.0 CILPLAGGTSYGKLTF_CASSLGQAYEQYF 308 6926 EBNA3A-193-201 EBV 0.83 1022 EBNA3A-193-201 94 6832 10 EBV EBNA3A FLRGRAYGL effector memory T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-B*08:01 B2M MHCI -14334 chip0516_603823 10.8 10.55 Chip4 healthy_6 healthy _ 6746 5626 EBV-LMP2A EBV 1.0 700 EBV-LMP2A 69 5557 9 EBV LMP2A CLGGLLTMV effector memory T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*02:01 B2M MHCI -14335 chip0516_496992 12.8 8.47 Chip4 healthy_10 healthy _ 6746 3314 EBNA3A-158-166 EBV 0.45 444 EBNA3A-158-166 89 3225 10 EBV EBNA3A QAKWRLQTL effector memory T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-B*08:01 B2M MHCI -14336 chip0516_658572 11.34 12.46 Chip4 healthy_6 healthy _ 6746 3202 EBV-LMP2A EBV 0.95 700 EBV-LMP2A 103 3099 11 EBV LMP2A CLGGLLTMV effector T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*02:01 B2M MHCI -14337 chip0516_44107 10.67 6.92 Chip4 healthy_6 healthy TGTGCTGTTCTAATGGATAGCAACTATCAGTTAATCTGG CAVLMDSNYQLIW TRAV12-3*01,TRAV21*01 TRAJ33*01 28.0 2021.0 TGTGCTGTGGCCCTCTCAAGCAAATCAACCTTT CAVALSSKSTF TRAV8-3*01 TRAJ27*01 21.0 2855.0 0.34 TGCGCCAGCAGCGGGGACGGAATGAACACTGAAGCTTTCTTT CASSGDGMNTEAFF TRBV10-2*01 TRBJ1-1*01 4.0 170.0 CAVLMDSNYQLIW_CASSGDGMNTEAFF 20 6990 EBV-LMP2A EBV 1.0 700 EBV-LMP2A 89 6901 10 EBV LMP2A CLGGLLTMV effector memory T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*02:01 B2M MHCI -14338 chip0516_880677 -4.01 12.98 Chip4 healthy_8 healthy TGTGCTGTGGCCCTCTCAAGCAAATCAACCTTT CAVALSSKSTF TRAV8-3*01 TRAJ27*01 2.0 28.0 TGTGCTGTGGCTGCCGCACAGTGATGACTCGTTCTTCTTT CAVAAAca??gtDDSFFF TRAV8-3*01 TRAJ30*01 2.0 77.0 0.5 TGCAGTGCTAGAGATACCATGTTCGCAACTAATGAAAAACTGTTTTTT CSARDTMFATNEKLFF TRBV20-1*01 TRBJ1-4*01 56.0 2990.0 CAVALSSKSTF_CSARDTMFATNEKLFF 1 4348 INS-SLQ-8 INS 0.86 2 INS-SLQ-8 81 4267 1 HomoSapiens INS SLQKRGIV Naive T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-B*08:01 B2M MHCI -14339 chip0516_718132 7.43 11.88 Chip4 healthy_9 healthy TGTGCTCTGAGTGAATGGGAGGGAGCCCAGAAGCTGGTATTT CALSEWEGAQKLVF TRAV19*01 TRAJ54*01 2.0 59.0 CALSEWEGAQKLVF_ 1 5033 BZLF1-190-197 EBV 0.59 2156 BZLF1-190-197 85 4948 7 EBV BZLF1 RAKFKQLL transitional T cells between effector and memory populations PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-B*08:01 B2M MHCI -14340 chip0516_333442 -3.68 10.03 Chip4 healthy_8 healthy TGTGCTGTGGGAAGAGGGGCTGCAGGCAACAAGCTAACTTTT CAVGRGAAGNKLTF TRAV8-3*01 TRAJ17*01 2.0 32.0 TGCAGCGTGGGGACAGGGAGGCACTACGAGCAGTACTTC CSVGTGRHYEQYF TRBV29-1*01 TRBJ2-7*01 89.0 7458.0 CAVGRGAAGNKLTF_CSVGTGRHYEQYF 1 6399 G6PC2-YLK-8 IGRP 0.71 27 G6PC2-YLK-8 94 6305 2 HomoSapiens G6PC2 YLKTNLFL Naive T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-B*08:01 B2M MHCI -14341 chip0516_39785 7.79 10.73 Chip4 healthy_8 healthy TGTGCCAGCAGCTTAGGACAGGCCTACGAGCAGTACTTC CASSLGQAYEQYF TRBV7-8*01 TRBJ2-7*01 9.0 701.0 _CASSLGQAYEQYF 175 8404 EBNA3A-193-201 EBV 0.86 1022 EBNA3A-193-201 91 8313 7 EBV EBNA3A FLRGRAYGL transitional T cells between effector and memory populations PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-B*08:01 B2M MHCI -14342 chip0516_551445 10.4 10.26 Chip4 healthy_6 healthy TGCGCCAGCAGCGGGGACGGAATGAACACTGAAGCTTTCTTT CASSGDGMNTEAFF TRBV10-2*01 TRBJ1-1*01 7.0 368.0 _CASSGDGMNTEAFF 131 7767 EBV-LMP2A EBV 1.0 700 EBV-LMP2A 107 7660 9 EBV LMP2A CLGGLLTMV effector memory T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*02:01 B2M MHCI -14343 chip0516_779600 -1.6 12.36 Chip4 healthy_8 healthy TGTGCAGGAGCACGTGATAGCAGCTATAAATTGATCTTC CAGARDSSYKLIF TRAV27*01 TRAJ12*01 12.0 615.0 TGCAGTGCTTTCCGAACCCGGGGGGTTCTCACAGATACGCAGTATTTT CSAFRTRGVLTDTQYF TRBV20-1*01 TRBJ2-3*01 53.0 3652.0 CAGARDSSYKLIF_CSAFRTRGVLTDTQYF 1 4320 NP225-233 FLU 0.7 23 NP225-233 100 4220 1 InfluenzaA NP ILKGKFQTA Naive T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-B*08:01 B2M MHCI -14344 chip0516_86403 12.13 7.54 Chip4 healthy_6 healthy TGTGCTGTGGCCCTCTCAAGCAAATCAACCTTT CAVALSSKSTF TRAV8-3*01 TRAJ27*01 8.0 647.0 CAVALSSKSTF_ 58 5654 EBV-LMP2A EBV 0.97 700 EBV-LMP2A 103 5551 10 EBV LMP2A CLGGLLTMV effector memory T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*02:01 B2M MHCI -14345 chip0516_515288 11.86 8.82 Chip4 healthy_6 healthy _ 6746 4234 EBV-LMP2A EBV 0.95 700 EBV-LMP2A 104 4130 10 EBV LMP2A CLGGLLTMV effector memory T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*02:01 B2M MHCI -14346 chip0516_151344 10.51 10.31 Chip4 healthy_6 healthy TGTGCTGTGGCCCTCTCAAGCAAATCAACCTTT CAVALSSKSTF TRAV8-3*01 TRAJ27*01 4.0 454.0 CAVALSSKSTF_ 58 7141 EBV-LMP2A EBV 0.93 700 EBV-LMP2A 87 7054 9 EBV LMP2A CLGGLLTMV effector memory T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*02:01 B2M MHCI -14347 chip0516_463418 -4.02 9.45 Chip4 healthy_9 healthy TGTGCCATGGACCGATACAACTTCAACAAATTTTACTTT CAMDRYNFNKFYF TRAV39*01 TRAJ21*01 11.0 682.0 CAMDRYNFNKFYF_ 1 5230 GAD2-MMI-8 GAD65 0.68 40 GAD2-MMI-8 83 5147 2 HomoSapiens GAD2 MMIARFKM Naive T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-B*08:01 B2M MHCI -14348 chip0516_715710 10.7 12.1 Chip4 healthy_9 healthy TGTGCAATGAGCGCGGACGATAGCAACTATCAGTTAATCTGG CAMSADDSNYQLIW TRAV12-3*01 TRAJ33*01 24.0 1433.0 CAMSADDSNYQLIW_ 1 3534 BZLF1-190-197 EBV 0.64 2156 BZLF1-190-197 69 3465 11 EBV BZLF1 RAKFKQLL effector T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-B*08:01 B2M MHCI -14349 chip0516_641225 10.95 9.36 Chip4 healthy_6 healthy TGTGCTGTGGCCCTCTCAAGCAAAGCAACCTTT CAVALSSKATF TRAV8-3*01 TRAJ27*01 2.0 175.0 TGCGCCAGCAGCGGGGACGGAATGAACACTGAAGCTTTCTTT CASSGDGMNTEAFF TRBV10-2*01 TRBJ1-1*01 30.0 1543.0 CAVALSSKATF_CASSGDGMNTEAFF 1 6764 EBV-LMP2A EBV 0.96 700 EBV-LMP2A 94 6670 10 EBV LMP2A CLGGLLTMV effector memory T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*02:01 B2M MHCI -14350 chip0516_630715 11.66 8.69 Chip4 healthy_8 healthy TGTGCCGTGAAGACGGACACCAATGCAGGCAAATCAACCTTT CAVKTDTNAGKSTF TRAV12-2*01 TRAJ27*01 28.0 1251.0 CAVKTDTNAGKSTF_ 20 4771 EBNA3A-193-201 EBV 0.68 1022 EBNA3A-193-201 94 4677 10 EBV EBNA3A FLRGRAYGL effector memory T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-B*08:01 B2M MHCI -14351 chip0516_492816 -3.64 12.22 Chip4 healthy_8 healthy TGTGCCAGTAACTCCGCCCCGAACACTGAAGCTTTCTTT CASNSAPNTEAFF TRBV19*01 TRBJ1-1*01 24.0 1240.0 _CASNSAPNTEAFF 1 5845 ZNT8-PTE-9 ZNT8 0.78 18 ZNT8-PTE-9 86 5759 1 HomoSapiens ZNT8 PTEKGANEY Naive T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*01:01 B2M MHCI -14352 chip0516_545871 -3.29 9.51 Chip4 healthy_6 healthy _ 6746 5272 ZNT8-228-236 ZNT8 0.92 8 NEG 94 5178 2 HomoSapiens ZNT8 SISVLISAL Naive T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*02:01 B2M MHCI -14353 chip0516_71676 11.49 7.79 Chip4 healthy_6 healthy TGTGCCAGCAGCCAAGAGGGGGGGGGGGGCTACGAGCAGTACTTC CASSQEGGGGYEQYF TRBV4-2*01 TRBJ2-7*01 19.0 1609.0 _CASSQEGGGGYEQYF 2 6749 EBV-LMP1-2 EBV 1.0 41 NEG 98 6651 10 EBV LMP1 YLQQNWWTL effector memory T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*02:01 B2M MHCI -14354 chip0516_758430 11.0 11.3 Chip4 healthy_8 healthy _ 6746 5096 EBNA3A-158-166 EBV 0.54 444 NEG 83 5013 9 EBV EBNA3A QAKWRLQTL effector memory T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-B*08:01 B2M MHCI -14355 chip0516_448728 9.14 11.66 Chip4 healthy_8 healthy TGCGTCCTGCCCCTTGCTGGTGGTACTAGCTATGGAAAGCTGACATTT CVLPLAGGTSYGKLTF TRAV26-2*01 TRAJ52*01 3.0 121.0 TGTGCCAGCAGCTTAGGACAGGCCTACGAGCAGTACTTC CASSLGQAYEQYF TRBV7-8*01 TRBJ2-7*01 7.0 465.0 CVLPLAGGTSYGKLTF_CASSLGQAYEQYF 1 5873 EBNA3A-193-201 EBV 0.89 1022 EBNA3A-193-201 95 5778 9 EBV EBNA3A FLRGRAYGL effector memory T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-B*08:01 B2M MHCI -14356 chip0516_326826 -2.14 7.13 Chip4 healthy_8 healthy TGTGCTCTCCGAGATGACAAGATCATCTTT CALRDDKIIF TRAV21*01 TRAJ30*01 13.0 1351.0 CALRDDKIIF_ 1 6293 GAD2-FSL-9 GAD65 0.96 3 GAD2-FSL-9 85 6208 3 HomoSapiens GAD2 FSLKKGAAA Naive T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-B*08:01 B2M MHCI -14357 chip0516_74850 10.85 8.77 Chip4 healthy_8 healthy TGTGCCAGCAGCTTAGGACAGGCCTACGAGCAGTACTTC CASSLGQAYEQYF TRBV7-8*01 TRBJ2-7*01 13.0 724.0 _CASSLGQAYEQYF 175 6768 EBNA3A-193-201 EBV 0.99 1022 EBNA3A-193-201 96 6672 10 EBV EBNA3A FLRGRAYGL effector memory T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-B*08:01 B2M MHCI -14358 chip0516_21404 -2.16 8.51 Chip4 healthy_6 healthy TGTGCCAGCAGTTTATCGGTGGGGGCCCCCTACGAGCAGTACTTC CASSLSVGAPYEQYF TRBV27*01 TRBJ2-7*01 30.0 1986.0 _CASSLSVGAPYEQYF 1 6591 HCVNS3-1073-1081 HCV 1.0 36 HCVNS3-1073-1081 79 6512 3 HCV NS3 CINGVCWTV Naive T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*02:01 B2M MHCI -14359 chip0516_762767 12.57 8.65 Chip4 healthy_6 healthy TGTGCTGTGGCCCTCTCAAGCAAATCAACCTTT CAVALSSKSTF TRAV8-3*01 TRAJ27*01 3.0 321.0 TGGGCCAGCAGCGGGGACGGCATGAACACTGAAGCTTTCTTT WASSGDGMNTEAFF TRBV10-2*01 TRBJ1-1*01 3.0 191.0 CAVALSSKSTF_WASSGDGMNTEAFF 1 4445 EBV-LMP2A EBV 0.96 700 EBV-LMP2A 92 4353 10 EBV LMP2A CLGGLLTMV effector memory T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*02:01 B2M MHCI -14360 chip0516_268725 11.33 10.02 Chip4 healthy_6 healthy TGTGCTGTTCTAATGGATAGCAACTATCAGTTAATCTGG CAVLMDSNYQLIW TRAV21*01 TRAJ33*01 1.0 26.0 CAVLMDSNYQLIW_ 20 5329 EBV-LMP2A EBV 1.0 700 EBV-LMP2A 114 5215 9 EBV LMP2A CLGGLLTMV effector memory T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*02:01 B2M MHCI -14361 chip0516_216991 11.0 9.42 Chip4 healthy_8 healthy TGCATCCTGCCCCTTGCTGGTGGTACTAGCTATGGAAAGCTGACATTT CILPLAGGTSYGKLTF TRAV26-2*01 TRAJ52*01 78.0 5059.0 CILPLAGGTSYGKLTF_ 55 6559 EBNA3A-193-201 EBV 0.93 1022 EBNA3A-193-201 98 6461 9 EBV EBNA3A FLRGRAYGL effector memory T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-B*08:01 B2M MHCI -14362 chip0516_745270 9.47 10.64 Chip4 healthy_8 healthy TGTGCCAGCAGTTTAATGGGGACAGGGGGCTTGAGTGAAAAACTGTTTTTT CASSLMGTGGLSEKLFF TRBV28*01 TRBJ1-4*01 4.0 125.0 _CASSLMGTGGLSEKLFF 18 6111 EBNA3A-158-166 EBV 0.6 444 EBNA3A-158-166 98 6013 9 EBV EBNA3A QAKWRLQTL effector memory T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-B*08:01 B2M MHCI -14363 chip0516_225306 10.19 9.94 Chip4 healthy_6 healthy _ 6746 6733 EBV-LMP2A EBV 1.0 700 EBV-LMP2A 99 6634 9 EBV LMP2A CLGGLLTMV effector memory T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*02:01 B2M MHCI -14364 chip0516_346801 6.4 13.75 Chip4 healthy_10 healthy TGCGCCAGCAGCCAAGATTCGGGACACGAGCAGTACTTC CASSQDSGHEQYF TRBV3-1*01 TRBJ2-7*01 51.0 3966.0 _CASSQDSGHEQYF 1 4257 NP380-388 FLU 0.89 60 NP380-388 87 4170 7 InfluenzaA NP ELRSRYWAI transitional T cells between effector and memory populations PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-B*08:01 B2M MHCI -14365 chip0516_157660 10.58 8.53 Chip4 tet_neg CCCTGCAGCACGCCAAGGAAATCACATCTTT PCSTP??aGNHIF TRAV13-1*01 TRAJ42*01 2.0 15.0 PCSTP??aGNHIF_ 1 8229 EBNA3A-193-201 EBV 0.92 1022 EBNA3A-193-201 100 8129 10 EBV EBNA3A FLRGRAYGL effector memory T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-B*08:01 B2M MHCI -14366 chip0516_577668 13.32 13.67 Chip4 healthy_8 healthy TGTGCCAGCAGCTTAGGACAGGCCTACGAGCAGTACTTC CASSLGQAYEQYF TRBV7-8*01 TRBJ2-7*01 14.0 656.0 _CASSLGQAYEQYF 175 1546 EBNA3A-193-201 EBV 0.61 1022 EBNA3A-193-201 87 1459 11 EBV EBNA3A FLRGRAYGL effector T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-B*08:01 B2M MHCI -14367 chip0516_100911 10.86 11.66 Chip4 healthy_6 healthy TGCGCCAGCAGCGGGGACGGAATGAACACTGAAGCTTTCTTT CASSGDGMNTEAFF TRBV10-2*01 TRBJ1-1*01 3.0 128.0 _CASSGDGMNTEAFF 131 4509 EBV-LMP2A EBV 0.95 700 EBV-LMP2A 104 4405 9 EBV LMP2A CLGGLLTMV effector memory T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*02:01 B2M MHCI -14368 chip0516_80765 12.52 10.3 Chip4 healthy_6 healthy _ 6746 5209 EBV-LMP2A EBV 1.0 700 EBV-LMP2A 98 5111 9 EBV LMP2A CLGGLLTMV effector memory T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*02:01 B2M MHCI -14369 chip0516_719576 -4.3 8.1 Chip4 healthy_8 healthy TGTGCTCTGAAGGTCGACCAGGCAGGAACTGCTCTGATCTTC CALKVDQAGTALIF TRAV9-2*01 TRAJ15*01 1.0 37.0 TGTGCCAGCAGCTGGACTAATCAGCCCCAGCATTTT CASSWTNQPQHF TRBV7-9*01 TRBJ1-5*01 17.0 1390.0 CALKVDQAGTALIF_CASSWTNQPQHF 1 5336 gp160-586-593 HIV 0.8 30 gp160-586-593 65 5271 2 HIV-1 gp160 YLKDQQLL Naive T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-B*08:01 B2M MHCI -14370 chip0516_344610 5.91 13.2 Chip4 healthy_8 healthy TGCATCTTAAGGAAATGAGACCTTAACCTTT CILRK??tETLTF TRAV26-1*01 TRAJ48*01 16.0 1794.0 CILRK??tETLTF_ 1 4975 NP30-38 FLU 0.72 72 NP30-38 85 4890 7 InfluenzaA NP RPIIRPATL transitional T cells between effector and memory populations PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-B*08:01 B2M MHCI -14371 chip0516_655988 11.42 7.57 Chip4 healthy_6 healthy _ 6746 4516 EBV-LMP2-FLY EBV 0.8 355 NEG 92 4424 10 EBV LMP2 FLYALALLL effector memory T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*02:01 B2M MHCI -14372 chip0516_683501 11.61 8.96 Chip4 healthy_8 healthy TGTGCCAGCAGCTTAGGACAGGCCTACGAGCAGTACTTC CASSLGQAYEQYF TRBV7-8*01 TRBJ2-7*01 23.0 1449.0 _CASSLGQAYEQYF 175 3750 EBNA3A-193-201 EBV 0.57 1022 EBNA3A-193-201 104 3646 10 EBV EBNA3A FLRGRAYGL effector memory T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-B*08:01 B2M MHCI -14373 chip0516_56999 15.5 12.63 Chip4 healthy_8 healthy TGTGCCAGCAGCTTAGGACAGGCCTACGAGCAGTACTTC CASSLGQAYEQYF TRBV7-8*01 TRBJ2-7*01 12.0 1310.0 _CASSLGQAYEQYF 175 2770 EBNA3A-193-201 EBV 0.57 1022 EBNA3A-193-201 87 2683 12 EBV EBNA3A FLRGRAYGL effector T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-B*08:01 B2M MHCI -14374 chip0516_573959 10.7 10.03 Chip4 healthy_6 healthy TGTGCTGTGGCCCTCTCAAGCAAATCAACCTTT CAVALSSKSTF TRAV8-3*01 TRAJ27*01 2.0 109.0 CAVALSSKSTF_ 58 5974 EBV-LMP2A EBV 0.9 700 EBV-LMP2A 87 5887 9 EBV LMP2A CLGGLLTMV effector memory T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*02:01 B2M MHCI -14375 chip0516_436369 5.43 8.77 Chip4 healthy_7 healthy TGTGCTACGGAGGGGGATTCAGGATACAGCACCCTCACCTTT CATEGDSGYSTLTF TRAV17*01 TRAJ11*01 80.0 4138.0 TGTGCCAGCAGTTACCAGGGAGGTAACTATGGCTACACCTTC CASSYQGGNYGYTF TRBV6-5*01 TRBJ1-2*01 21.0 1129.0 CATEGDSGYSTLTF_CASSYQGGNYGYTF 1 5597 EBV-LMP2-FLY EBV 0.65 355 NEG 95 5502 6 EBV LMP2 FLYALALLL central memory T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*02:01 B2M MHCI -14376 chip0516_761914 7.74 13.53 Chip4 healthy_8 healthy TGTGCCAGCAGCTTAGGAACAGGGAATGACTATGGCTACACCTTC CASSLGTGNDYGYTF TRBV7-6*01 TRBJ1-2*01 1.0 98.0 _CASSLGTGNDYGYTF 2 3737 NP44-52 FLU 0.87 474 NP44-52 95 3642 7 InfluenzaA NP CTELKLSDY transitional T cells between effector and memory populations PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*01:01 B2M MHCI -14377 chip0516_657099 7.59 11.69 Chip4 healthy_9 healthy TGTGCAGAGAGTATCGGGTACTCTGGGGCTGGGAGTTACCAACTCACTTTC CAESIGYSGAGSYQLTF TRAV5*01 TRAJ28*01 4.0 220.0 CAESIGYSGAGSYQLTF_ 1 4352 EBNA3A-158-166 EBV 0.89 444 EBNA3A-158-166 97 4255 7 EBV EBNA3A QAKWRLQTL transitional T cells between effector and memory populations PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-B*08:01 B2M MHCI -14378 chip0516_171169 10.92 10.3 Chip4 healthy_6 healthy _ 6746 4745 EBV-LMP2A EBV 0.63 700 EBV-LMP2A 93 4652 9 EBV LMP2A CLGGLLTMV effector memory T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*02:01 B2M MHCI -14379 chip0516_334010 6.74 11.33 Chip4 healthy_8 healthy _ 6746 4986 EBNA3A-193-201 EBV 0.75 1022 EBNA3A-193-201 68 4918 7 EBV EBNA3A FLRGRAYGL transitional T cells between effector and memory populations PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-B*08:01 B2M MHCI -14380 chip0516_199060 -3.12 8.32 Chip4 healthy_8 healthy TGTGGCACAGCGTCGATGGATAGCAGCTATAAATTGATCTTC CGTASMDSSYKLIF TRAV30*01 TRAJ12*01 29.0 2021.0 TGTGCTAGTGGTTTGCCAGGGACAGGGCCGGGTCATCAGCCCCAGCATTTT CASGLPGTGPGHQPQHF TRBV12-5*01 TRBJ1-5*01 17.0 722.0 CGTASMDSSYKLIF_CASGLPGTGPGHQPQHF 1 7482 G6PC2-NLI-8 IGRP 0.56 32 NEG 75 7407 2 HomoSapiens G6PC2 NLIFKWIL Naive T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-B*08:01 B2M MHCI -14381 chip0516_290836 -1.4 9.28 Chip4 healthy_7 healthy TGCAGCGTTGAAGATAGCACTAGCGGTACCTACGAGCAGTACTTC CSVEDSTSGTYEQYF TRBV29-1*01 TRBJ2-7*01 105.0 8422.0 _CSVEDSTSGTYEQYF 1 5099 PGT-178 PGT 0.77 1480 PGT-178 93 5006 3 HomoSapiens PGT LLAGIGTVPI Naive T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*02:01 B2M MHCI -14382 chip0516_385593 5.3 9.55 Chip4 healthy_6 healthy TGTGGAGCAGACGGAAAGTCGAGGTAGCAACTATAAACTGACATTT CGADGKSag??gtSNYKLTF TRAV34*01 TRAJ53*01 20.0 1080.0 CGADGKSag??gtSNYKLTF_ 1 7574 EBV-LMP1-1 EBV 0.94 237 EBV-LMP1-1 102 7472 6 EBV LMP1 YLLEMLWRL central memory T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*02:01 B2M MHCI -14383 chip0516_305767 5.82 11.94 Chip4 healthy_6 healthy TGTGCTTTCATGAAGTATCCCTCGGGGCGTGACAGGGCGCCCCGCCGCTGGTATTT CAFMKYPSGc?g*QGAPPLVF TRAV38-1*01 TRAJ54*01 12.0 506.0 CAFMKYPSGc?g*QGAPPLVF_ 1 7012 M1 FLU 0.88 1250 M1 78 6934 7 InfluenzaA M1 GILGFVFTL transitional T cells between effector and memory populations PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*02:01 B2M MHCI -14384 chip0516_154639 14.95 10.54 Chip4 healthy_7 healthy TGTGCCAGCAGCCAAAGCCCCGGAGGGACCCAGTACTTC CASSQSPGGTQYF TRBV14*01 TRBJ2-5*01 15.0 725.0 _CASSQSPGGTQYF 94 3819 EBV-BLMF1 EBV 0.82 2531 NEG 81 3738 12 EBV BLMF1 GLCTLVAML effector T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*02:01 B2M MHCI -14385 chip0516_823717 13.68 8.01 Chip4 healthy_8 healthy TGTGCTGTGACCCTTACCCTCTACTCTGGGGCTGGGAGTTACCAACTCACTTTC CAVTLTLYSGAGSYQLTF TRAV21*01 TRAJ28*01 7.0 293.0 CGTGCCAGCAGTTTAATGGGGACAGGGGGCTTGAGTGAAAAACTGTTTTTT RASSLMGTGGLSEKLFF TRBV28*01 TRBJ1-4*01 31.0 1216.0 CAVTLTLYSGAGSYQLTF_RASSLMGTGGLSEKLFF 1 4268 EBNA3A-158-166 EBV 0.6 444 NEG 84 4184 10 EBV EBNA3A QAKWRLQTL effector memory T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-B*08:01 B2M MHCI -14386 chip0516_214087 12.67 13.3 Chip4 healthy_6 healthy _ 6746 2109 EBV-BRLF1 EBV 0.92 1264 NEG 83 2026 11 EBV BRLF1 YVLDHLIVV effector T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*02:01 B2M MHCI -14387 chip0516_79814 11.65 8.86 Chip4 healthy_6 healthy TGCGCCAGCAGCGGGGACGGAATGAACACTGAAGCTTTCTTT CASSGDGMNTEAFF TRBV10-2*01 TRBJ1-1*01 4.0 163.0 _CASSGDGMNTEAFF 131 4325 EBV-LMP2A EBV 1.0 700 EBV-LMP2A 81 4244 10 EBV LMP2A CLGGLLTMV effector memory T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*02:01 B2M MHCI -14388 chip0516_112707 13.31 7.77 Chip4 healthy_9 healthy TGTGCCAGCACCGGGGCGCGGGGATCCTACGAGCAGTACTTC CASTGARGSYEQYF TRBV2*01 TRBJ2-7*01 39.0 3012.0 _CASTGARGSYEQYF 2 3296 ZNT8-VTD-9 ZNT8 0.92 65 ZNT8-VTD-9 83 3213 10 HomoSapiens ZNT8 VTDAAHLLI effector memory T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*01:01 B2M MHCI -14389 chip0516_820011 11.83 8.06 Chip4 healthy_6 healthy _ 6746 4364 EBV-LMP2A EBV 0.95 700 EBV-LMP2A 105 4259 10 EBV LMP2A CLGGLLTMV effector memory T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*02:01 B2M MHCI -14390 chip0516_831197 4.81 9.96 Chip4 healthy_6 healthy TGTGCCAGCAGTCAACAGGGGGGTAACTATGGCTACACCTTC CASSQQGGNYGYTF TRBV6-1*01 TRBJ1-2*01 9.0 331.0 _CASSQQGGNYGYTF 5 4142 EBV-LMP2-FLY EBV 1.0 355 NEG 80 4062 6 EBV LMP2 FLYALALLL central memory T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*02:01 B2M MHCI -14391 chip0516_818140 12.07 10.35 Chip4 healthy_6 healthy _ 6746 4407 EBV-BLMF1 EBV 1.0 2531 EBV-BLMF1 105 4302 9 EBV BLMF1 GLCTLVAML effector memory T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*02:01 B2M MHCI -14392 chip0516_26367 11.25 9.52 Chip4 healthy_9 healthy _ 6746 3122 BZLF1-190-197 EBV 0.93 2156 BZLF1-190-197 76 3046 9 EBV BZLF1 RAKFKQLL effector memory T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-B*08:01 B2M MHCI -14393 chip0516_266824 11.4 9.13 Chip4 healthy_6 healthy TGTGCTGTGGCCCTCTCAAGCAAATCAACCTTT CAVALSSKSTF TRAV8-3*01 TRAJ27*01 7.0 492.0 TGCGCCAGCAGCGGGGACGGAATGAACACTGAAGCTTTCTTT CASSGDGMNTEAFF TRBV10-2*01 TRBJ1-1*01 31.0 2121.0 CAVALSSKSTF_CASSGDGMNTEAFF 50 6287 EBV-LMP2A EBV 0.92 700 EBV-LMP2A 87 6200 10 EBV LMP2A CLGGLLTMV effector memory T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*02:01 B2M MHCI -14394 chip0516_792467 11.48 8.36 Chip4 healthy_6 healthy _ 6746 6393 EBV-LMP2A EBV 0.89 700 EBV-LMP2A 81 6312 10 EBV LMP2A CLGGLLTMV effector memory T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*02:01 B2M MHCI -14395 chip0516_114656 10.85 11.72 Chip4 healthy_6 healthy TGCGCCAGCAGCGGGGACGGAATGAACACTGAAGCTTTCTTT CASSGDGMNTEAFF TRBV10-2*01 TRBJ1-1*01 8.0 360.0 _CASSGDGMNTEAFF 131 4801 EBV-LMP2A EBV 0.87 700 EBV-LMP2A 81 4720 9 EBV LMP2A CLGGLLTMV effector memory T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*02:01 B2M MHCI -14396 chip0516_33971 11.41 8.07 Chip4 healthy_8 healthy TGCATCCTGCCCCTTGCTGGTGGTACTAGCTATGGAAAGCTGACATTT CILPLAGGTSYGKLTF TRAV26-2*01 TRAJ52*01 20.0 1074.0 TGTGCCAGCAGCTTAGGACAGGCCTACGAGCAGTACTTC CASSLGQAYEQYF TRBV7-8*01 TRBJ2-7*01 8.0 368.0 CILPLAGGTSYGKLTF_CASSLGQAYEQYF 308 7810 EBNA3A-193-201 EBV 0.78 1022 EBNA3A-193-201 94 7716 10 EBV EBNA3A FLRGRAYGL effector memory T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-B*08:01 B2M MHCI -14397 chip0516_629686 10.99 11.39 Chip4 healthy_9 healthy _ 6746 3319 BZLF1-190-197 EBV 0.88 2156 BZLF1-190-197 88 3231 9 EBV BZLF1 RAKFKQLL effector memory T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-B*08:01 B2M MHCI -14398 chip0516_692905 9.5 13.12 Chip4 healthy_8 healthy TGTGCTCTGAGTTCACTCCCGGGGTACAGCAGTGCTTCCAAGATAATCTTT CALSSLPGYSSASKIIF TRAV19*01 TRAJ3*01 16.0 790.0 TGCGCCAGCAGCTTCCAGGGGAACACTGAAGCTTTCTTT CASSFQGNTEAFF TRBV4-1*01 TRBJ1-1*01 8.0 318.0 CALSSLPGYSSASKIIF_CASSFQGNTEAFF 1 3073 G6PC2-NLI-8 IGRP 1.0 32 G6PC2-NLI-8 103 2970 6 HomoSapiens G6PC2 NLIFKWIL central memory T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-B*08:01 B2M MHCI -14399 chip0516_322110 11.09 9.24 Chip4 healthy_6 healthy _ 6746 6294 EBV-LMP2A EBV 0.96 700 EBV-LMP2A 96 6198 10 EBV LMP2A CLGGLLTMV effector memory T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*02:01 B2M MHCI -14400 chip0516_866955 10.83 9.93 Chip4 healthy_6 healthy TGTGCTGTTCTAATGGATAGCAACTATCAGTTAATCTGG CAVLMDSNYQLIW TRAV12-3*01 TRAJ33*01 1.0 38.0 TGCGCCAGCAGCGGGGACGGAATGAACACTGAAGCTTTCTTT CASSGDGMNTEAFF TRBV10-2*01 TRBJ1-1*01 30.0 1817.0 CAVLMDSNYQLIW_CASSGDGMNTEAFF 20 5236 EBV-LMP2A EBV 0.81 700 EBV-LMP2A 94 5142 9 EBV LMP2A CLGGLLTMV effector memory T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*02:01 B2M MHCI -14401 chip0516_552138 11.88 11.87 Chip4 healthy_6 healthy TGCGCCAGCAGCGGGGATGGAATGAACACTGAAGCTTTCTTT CASSGDGMNTEAFF TRBV10-2*01 TRBJ1-1*01 10.0 353.0 _CASSGDGMNTEAFF 131 4995 EBV-LMP2A EBV 0.91 700 EBV-LMP2A 99 4896 11 EBV LMP2A CLGGLLTMV effector T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*02:01 B2M MHCI -14402 chip0516_448130 8.61 11.72 Chip4 healthy_8 healthy _ 6746 6161 EBNA3A-193-201 EBV 0.93 1022 EBNA3A-193-201 83 6078 7 EBV EBNA3A FLRGRAYGL transitional T cells between effector and memory populations PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-B*08:01 B2M MHCI -14403 chip0516_669869 8.15 10.77 Chip4 healthy_8 healthy TGCATCCTGCCCCTTGCTGGTGGTACTAGCTATGGAAAGCTGACATTT CILPLAGGTSYGKLTF TRAV26-2*01 TRAJ52*01 2.0 129.0 TGTGCCAGCAGCTTAGGACAGGCCTACGAGCAGTACTTC CASSLGQAYEQYF TRBV7-8*01 TRBJ2-7*01 5.0 405.0 CILPLAGGTSYGKLTF_CASSLGQAYEQYF 308 5900 EBNA3A-193-201 EBV 0.84 1022 EBNA3A-193-201 106 5794 7 EBV EBNA3A FLRGRAYGL transitional T cells between effector and memory populations PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-B*08:01 B2M MHCI -14404 chip0516_611566 -4.05 9.54 Chip4 healthy_7 healthy TGTGCAATGAGTGGGGATAACAAGATCATCTTT CAMSGDNKIIF TRAV12-3*01 TRAJ30*01 6.0 687.0 TGTGCCAGCAGCTTAGGACAGGCCTACGAGCAGTACTTC CASSLGQAYEQYF TRBV7-8*01 TRBJ2-7*01 2.0 30.0 CAMSGDNKIIF_CASSLGQAYEQYF 1 5450 PGT-178 PGT 0.96 1480 PGT-178 80 5370 2 HomoSapiens PGT LLAGIGTVPI Naive T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*02:01 B2M MHCI -14405 chip0516_535079 10.64 13.67 Chip4 healthy_6 healthy _ 6746 3385 EBV-BRLF1 EBV 0.69 1264 NEG 85 3300 11 EBV BRLF1 YVLDHLIVV effector T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*02:01 B2M MHCI -14406 chip0516_56628 -3.41 11.18 Chip4 healthy_6 healthy _ 6746 5534 PGT-178 PGT 0.42 1480 NEG 78 5456 1 HomoSapiens PGT LLAGIGTVPI Naive T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*02:01 B2M MHCI -14407 chip0516_713535 10.51 10.79 Chip4 healthy_6 healthy _ 6746 4919 EBV-LMP2A EBV 0.82 700 EBV-LMP2A 80 4839 9 EBV LMP2A CLGGLLTMV effector memory T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*02:01 B2M MHCI -14408 chip0516_136890 -1.3 9.36 Chip4 healthy_9 healthy _ 6746 5295 NP44-52 FLU 0.85 474 NP44-52 79 5216 3 InfluenzaA NP CTELKLSDY Naive T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*01:01 B2M MHCI -14409 chip0516_730499 7.72 11.66 Chip4 healthy_6 healthy TGTGCCAGTCAGGGTCCTGTAGGGGCGGCTCCGCCCCAGCTTTTT CASQGPVGAAPPQLF TRBV19*01 TRBJ1-5*01 4.0 197.0 _CASQGPVGAAPPQLF 1 5882 EBV-BRLF1 EBV 0.96 1264 EBV-BRLF1 88 5794 7 EBV BRLF1 YVLDHLIVV transitional T cells between effector and memory populations PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*02:01 B2M MHCI -14410 chip0516_405919 11.17 10.78 Chip4 healthy_6 healthy _ 6746 5441 EBV-LMP2A EBV 1.0 700 EBV-LMP2A 73 5368 9 EBV LMP2A CLGGLLTMV effector memory T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*02:01 B2M MHCI -14411 chip0516_800912 -4.18 9.79 Chip4 healthy_8 healthy _ 6746 5276 NP140-148 FLU 0.74 102 NP140-148 100 5176 2 InfluenzaA NP HSNLNDATY Naive T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*01:01 B2M MHCI -14412 chip0516_862242 11.32 12.28 Chip4 healthy_6 healthy _ 6746 3872 EBV-LMP2A EBV 1.0 700 EBV-LMP2A 84 3788 11 EBV LMP2A CLGGLLTMV effector T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*02:01 B2M MHCI -14413 chip0516_736173 11.6 8.88 Chip4 healthy_6 healthy TGTGCTGTGGCCCTCTCAAGCAAATCAACCTTT CAVALSSKSTF TRAV8-3*01 TRAJ27*01 7.0 498.0 TGCGCCAGCAGCGGGGACGGAATGAACACTGAAGCTTTCTTT CASSGDGMNTEAFF TRBV10-2*01 TRBJ1-1*01 34.0 1418.0 CAVALSSKSTF_CASSGDGMNTEAFF 50 4856 EBV-LMP2A EBV 1.0 700 NEG 108 4748 10 EBV LMP2A CLGGLLTMV effector memory T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*02:01 B2M MHCI -14414 chip0516_331942 5.89 12.8 Chip4 healthy_6 healthy _ 6746 5524 M1 FLU 0.95 1250 M1 76 5448 7 InfluenzaA M1 GILGFVFTL transitional T cells between effector and memory populations PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*02:01 B2M MHCI -14415 chip0516_843366 5.35 10.15 Chip4 healthy_8 healthy TGTGCCAGCAGTTTAATGGGGACAGGGAGCTTGAGTGAAAAACTGTTTTTT CASSLMGTGSLSEKLFF TRBV28*01 TRBJ1-4*01 10.0 231.0 _CASSLMGTGSLSEKLFF 1 7098 EBNA3A-158-166 EBV 0.71 444 EBNA3A-158-166 83 7015 6 EBV EBNA3A QAKWRLQTL central memory T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-B*08:01 B2M MHCI -14416 chip0516_596127 -4.61 9.69 Chip4 healthy_9 healthy TGCGCCAGCCCTCATACGGATGTAGGGGGCGAAAAACGGTTTTTT CASPHTDVGGEKRFF TRBV4-3*01 TRBJ1-4*01 16.0 763.0 _CASPHTDVGGEKRFF 1 4744 gp160-586-593 HIV 0.69 30 gp160-586-593 84 4660 2 HIV-1 gp160 YLKDQQLL Naive T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-B*08:01 B2M MHCI -14417 chip0516_462841 9.52 9.14 Chip4 healthy_6 healthy TGTGCTGTGGCCCTCTCAAGCAAATCAACCTTT CAVALSSKSTF TRAV8-3*01 TRAJ27*01 2.0 28.0 TGCGCCAGCAGCGGGGACGGAATGAACACTGAAGCTTTCTTT CASSGDGMNTEAFF TRBV10-2*01 TRBJ1-1*01 31.0 1319.0 CAVALSSKSTF_CASSGDGMNTEAFF 50 7499 EBV-LMP2A EBV 0.97 700 EBV-LMP2A 88 7411 8 EBV LMP2A CLGGLLTMV effector memory T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*02:01 B2M MHCI -14418 chip0516_617758 -2.57 7.91 Chip4 healthy_9 healthy TGTGCCAGCAGCCCGCCTTCGGGGGCTCCTACGAGCAGTACTTC CASSPPSg?gGSYEQYF TRBV6-1*01 TRBJ2-7*01 11.0 2007.0 _CASSPPSg?gGSYEQYF 1 7956 INS-GSH-9 INS 0.73 19 INS-GSH-9 82 7874 2 HomoSapiens INS GSHLVEALY Naive T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*01:01 B2M MHCI -14419 chip0516_475267 10.87 11.42 Chip4 healthy_6 healthy TGTGCTGTGGCCCTCTCAAGCAAATCCACCTTT CAVALSSKSTF TRAV8-3*01 TRAJ27*01 6.0 313.0 CAVALSSKSTF_ 58 4705 EBV-LMP2A EBV 0.93 700 EBV-LMP2A 89 4616 9 EBV LMP2A CLGGLLTMV effector memory T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*02:01 B2M MHCI -14420 chip0516_804592 -1.93 8.09 Chip4 healthy_8 healthy TGTGTGGTGAACCAATACCATGTACAATAACAATGACATGCGCTTT CVVNQYHgt??acNNNDMRF TRAV12-1*01 TRAJ43*01 1.0 24.0 CVVNQYHgt??acNNNDMRF_ 1 6950 G6PC2-LTS-10 IGRP 0.72 59 G6PC2-LTS-10 76 6874 2 HomoSapiens G6PC2 LTSLTILQLY Naive T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*01:01 B2M MHCI -14421 chip0516_781324 7.04 11.42 Chip4 healthy_6 healthy TGTGCAATGAGCGCGGCTGGAGCCAATAGTAAGCTGACATTT CAMSAAGANSKLTF TRAV12-3*01 TRAJ56*01 49.0 3907.0 TGTGCCAGCAGCCCTCCCTACAATGAGCAGTTCTTC CASSPPYNEQFF TRBV7-8*01 TRBJ2-1*01 4.0 226.0 CAMSAAGANSKLTF_CASSPPYNEQFF 4 6024 ZNT8-115-123 ZNT8 0.83 74 ZNT8-115-123 79 5945 7 HomoSapiens ZNT8 LLSLFSLWL transitional T cells between effector and memory populations PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*02:01 B2M MHCI -14422 chip0516_653993 4.96 10.95 Chip4 healthy_6 healthy TGTGCATCCGCCACCAATGCAGGCAAATCAACCTTT CASATNAGKSTF TRAV17*01 TRAJ27*01 19.0 2041.0 CASATNAGKSTF_ 1 5136 ADH-79-88 ADH 0.69 15 NEG 105 5031 6 HomoSapiens ADH RQFGPDWIVA central memory T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*02:01 B2M MHCI -14423 chip0516_643651 12.3 8.55 Chip4 healthy_8 healthy TGCATCCTGCCCCTTGCTGATGGTACTAGCTATGGAAAGCTGACATTT CILPLADGTSYGKLTF TRAV26-2*01 TRAJ52*01 43.0 2527.0 TGTGCCAGCAGCTTAGGACAGGCCTACGAGCAGTACTTC CASSLGQAYEQYF TRBV7-8*01 TRBJ2-7*01 4.0 104.0 CILPLADGTSYGKLTF_CASSLGQAYEQYF 3 3164 EBNA3A-193-201 EBV 0.96 1022 EBNA3A-193-201 88 3076 10 EBV EBNA3A FLRGRAYGL effector memory T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-B*08:01 B2M MHCI -14424 chip0516_362128 4.97 10.77 Chip4 healthy_6 healthy TGTGCCAGCAGCTCGGGGCAGGGGGACAATGAGCAGTTCTTC CASSSGQGDNEQFF TRBV11-2*01 TRBJ2-1*01 4.0 172.0 _CASSSGQGDNEQFF 12 5000 EBV-BLMF1 EBV 0.9 2531 EBV-BLMF1 95 4905 6 EBV BLMF1 GLCTLVAML central memory T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*02:01 B2M MHCI -14425 chip0516_315707 6.13 13.86 Chip4 healthy_7 healthy _ 6746 4457 M1 FLU 0.72 1250 M1 93 4364 7 InfluenzaA M1 GILGFVFTL transitional T cells between effector and memory populations PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*02:01 B2M MHCI -14426 chip0516_789907 10.51 10.21 Chip4 healthy_8 healthy TGCATCCTGCCCCTTGCTGGTGGTACTAGCTATGGAAAGCTGACATTT CILPLAGGTSYGKLTF TRAV26-2*01 TRAJ52*01 9.0 300.0 TGTGCCAGCAGCTTAGGACAGGCCTACGAGCAGTACTTC CASSLGQAYEQYF TRBV7-8*01 TRBJ2-7*01 9.0 629.0 CILPLAGGTSYGKLTF_CASSLGQAYEQYF 308 6440 EBNA3A-193-201 EBV 0.96 1022 EBNA3A-193-201 93 6347 9 EBV EBNA3A FLRGRAYGL effector memory T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-B*08:01 B2M MHCI -14427 chip0516_823625 14.12 11.32 Chip4 tet_neg _ 6746 3705 NP140-148 FLU 0.43 102 NEG 87 3618 12 InfluenzaA NP HSNLNDATY effector T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*01:01 B2M MHCI -14428 chip0516_279955 -0.38 9.18 Chip4 healthy_8 healthy TGCGCCAGCAGCCAAGGAAAGGGGGACTACGCCGGGGAGCTGTTTTTT CASSQGKGDYAGELFF TRBV4-3*01 TRBJ2-2*01 1.0 34.0 _CASSQGKGDYAGELFF 1 5861 ZNT8-YAK-9 ZNT8 0.91 59 ZNT8-YAK-9 88 5773 4 HomoSapiens ZNT8 YAKWKLCSA Naive T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-B*08:01 B2M MHCI -14429 chip0516_78599 5.81 12.86 Chip4 healthy_8 healthy TGCGCCAGCAGCCAAGACGGACATAACACAGATACGCAGTATTTT CASSQDGHNTDTQYF TRBV4-1*01 TRBJ2-3*01 12.0 540.0 _CASSQDGHNTDTQYF 1 5783 NP44-52 FLU 0.89 474 NP44-52 84 5699 7 InfluenzaA NP CTELKLSDY transitional T cells between effector and memory populations PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*01:01 B2M MHCI -14430 chip0516_28715 11.56 10.96 Chip4 healthy_7 healthy TGCGCCAGCAGTCACGGGAACTATGGCTACACCTTC CASSHGNYGYTF TRBV5-1*01 TRBJ1-2*01 1.0 21.0 _CASSHGNYGYTF 15 4785 MART1-ALA MART1 0.55 269 NEG 81 4704 9 HomoSapiens MART1 ALAGIGILTV effector memory T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*02:01 B2M MHCI -14431 chip0516_72488 -2.93 13.95 Chip4 healthy_9 healthy TGCAGTGCTAGAGATTACGAGCGGGAAGTTTACAATGAGCAGTTCTTC CSARDYEREVYNEQFF TRBV20-1*01 TRBJ2-1*01 15.0 910.0 _CSARDYEREVYNEQFF 1 3041 NP413-421 FLU 1.0 16 NEG 76 2965 1 InfluenzaA NP ALKCKGFHV Naive T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-B*08:01 B2M MHCI -14432 chip0516_809616 6.26 11.82 Chip4 healthy_6 healthy TGTGTGGGGGGGGCATACTCTGGGGCTGGGAGTTACCAACTCACTTTC CVGGAYSGAGSYQLTF TRAV12-1*01 TRAJ28*01 17.0 868.0 TGTGCCAGCAGTTACTCTTCGACGGGCTATGGCTCCACCTTC CASSYSSTGYGSTF TRBV6-5*01 TRBJ1-2*01 9.0 452.0 CVGGAYSGAGSYQLTF_CASSYSSTGYGSTF 1 5661 ZNT8-110-118 ZNT8 0.5 1 NEG 89 5572 7 HomoSapiens ZNT8 DLTSFLLSL transitional T cells between effector and memory populations PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*02:01 B2M MHCI -14433 chip0516_877688 15.2 11.87 Chip4 healthy_7 healthy TGTGCCGTGGGGACGCGCTTT CAVGTRF TRAV12-2*01 TRAJ43*01 3.0 263.0 CAVGTRF_ 7 1844 PGT-178 PGT 0.77 1480 NEG 70 1774 12 HomoSapiens PGT LLAGIGTVPI effector T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*02:01 B2M MHCI -14434 chip0516_809012 -3.69 10.96 Chip4 healthy_8 healthy TGTGTGGTGAACATAGGGGCCAGTCTCCTGTTT CVVNIGASLLF TRAV12-1*01 TRAJ31*01 1.0 71.0 CVVNIGASLLF_ 1 5956 ZNT8-YAY-8 ZNT8 0.65 54 ZNT8-YAY-8 88 5868 1 HomoSapiens ZNT8 YAYAKWKL Naive T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-B*08:01 B2M MHCI -14435 chip0516_762285 5.78 12.55 Chip4 healthy_6 healthy _ 6746 5901 M1 FLU 0.9 1250 M1 76 5825 7 InfluenzaA M1 GILGFVFTL transitional T cells between effector and memory populations PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*02:01 B2M MHCI -14436 chip0516_631800 -2.53 12.34 Chip4 healthy_6 healthy _ 6746 4587 M1 FLU 0.86 1250 M1 85 4502 1 InfluenzaA M1 GILGFVFTL Naive T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*02:01 B2M MHCI -14437 chip0516_324796 10.14 10.24 Chip4 healthy_6 healthy _ 6746 5804 EBV-LMP2A EBV 0.95 700 EBV-LMP2A 97 5707 9 EBV LMP2A CLGGLLTMV effector memory T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*02:01 B2M MHCI -14438 chip0516_282653 11.15 10.89 Chip4 healthy_6 healthy TGCGCCAGCAGCGGGGACGGAATGAACACTGAAGCTTTCTTT CASSGDGMNTEAFF TRBV10-2*01 TRBJ1-1*01 6.0 274.0 _CASSGDGMNTEAFF 131 5143 EBV-LMP2A EBV 0.89 700 EBV-LMP2A 82 5061 9 EBV LMP2A CLGGLLTMV effector memory T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*02:01 B2M MHCI -14439 chip0516_46764 9.81 10.73 Chip4 healthy_8 healthy TGTGTGGTCGCTCAATACAACGTCAACAAATTTTACTTT CVVAQYNVNKFYF TRAV12-1*01 TRAJ21*01 24.0 1531.0 CVVAQYNVNKFYF_ 1 4693 G6PC2-NLI-9 IGRP 0.92 7 NEG 106 4587 9 HomoSapiens G6PC2 NLIFKWKSI effector memory T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-B*08:01 B2M MHCI -14440 chip0516_644691 4.9 9.37 Chip4 healthy_8 healthy TGTGCTACGGCCCTCGGGGGCAACATGCTCACCTTT CATALGGNMLTF TRAV17*01 TRAJ39*01 10.0 1323.0 TGCGCCAGCAGCCAAACCCCGAACACCGGGGAGCTGTTTTTT CASSQTPNTGELFF TRBV4-1*01 TRBJ2-2*01 18.0 1521.0 CATALGGNMLTF_CASSQTPNTGELFF 1 3764 gp160-586-593 HIV 0.5 30 NEG 95 3669 6 HIV-1 gp160 YLKDQQLL central memory T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-B*08:01 B2M MHCI -14441 chip0516_254468 10.86 11.6 Chip4 healthy_6 healthy TGTGCTGTGGCCCTCTCAAGCAAATCAACCTTT CAVALSSKSTF TRAV8-3*01 TRAJ27*01 9.0 655.0 CAVALSSKSTF_ 58 5348 EBV-LMP2A EBV 0.96 700 EBV-LMP2A 84 5264 9 EBV LMP2A CLGGLLTMV effector memory T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*02:01 B2M MHCI -14442 chip0516_641258 -3.31 8.62 Chip4 healthy_8 healthy TGTGCTGTGCCAAGCTGCAGGCAACTAGCTAACTTAT CAVPSC??aGN*LTY TRAV8-4*01 TRAJ17*01 7.0 355.0 CAVPSC??aGN*LTY_ 1 6280 GAD2-YAF-9 GAD65 0.81 6 GAD2-YAF-9 83 6197 2 HomoSapiens GAD2 YAFLHATDL Naive T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-B*08:01 B2M MHCI -14443 chip0516_397851 -3.18 8.86 Chip4 healthy_6 healthy TGTGCCAGCAGCTGGGCAGGGAGCGCGGGAGGGTCCGATACGCAGTATTTT CASSWAGSAGGSDTQYF TRBV28*01 TRBJ2-3*01 21.0 804.0 _CASSWAGSAGGSDTQYF 1 7967 MART1-ALA MART1 0.93 269 NEG 71 7896 2 HomoSapiens MART1 ALAGIGILTV Naive T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*02:01 B2M MHCI -14444 chip0516_342199 11.68 7.12 Chip4 healthy_7 healthy TGTGTGGCGGGACTATCAGGAGGAAGCTACATACCTACATTT CVAGLSGGSYIPTF TRAV12-1*01 TRAJ6*01 1.0 91.0 TGTGCCAGCAGCCAACAGGGAGGCACTGAAGCTTTCTTT CASSQQGGTEAFF TRBV4-2*01 TRBJ1-1*01 33.0 1598.0 CVAGLSGGSYIPTF_CASSQQGGTEAFF 1 6492 EBV-LMP1-2 EBV 0.83 41 NEG 85 6407 10 EBV LMP1 YLQQNWWTL effector memory T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*02:01 B2M MHCI -14445 chip0516_488091 11.06 11.88 Chip4 healthy_6 healthy _ 6746 4181 EBV-LMP2A EBV 0.8 700 EBV-LMP2A 106 4075 9 EBV LMP2A CLGGLLTMV effector memory T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*02:01 B2M MHCI -14446 chip0516_101000 -2.52 10.15 Chip4 healthy_8 healthy TGTGGCACAGATTAATCGCGACAGGAGGAAAGCTTATCTTC CGTD*Scg?TGGKLIF TRAV30*01 TRAJ23*01 52.0 4015.0 TGTGCCAGCAGCGCTGGAGGGGGGGCCTACGAGCAGTACTTC CASSAGGGAYEQYF TRBV9*01 TRBJ2-7*01 2.0 89.0 CGTD*Scg?TGGKLIF_CASSAGGGAYEQYF 1 5411 GAD2-FQQ-9 GAD65 0.81 10 GAD2-FQQ-9 78 5333 4 HomoSapiens GAD2 FQQDKHYDL Naive T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-B*08:01 B2M MHCI -14447 chip0516_51777 -0.45 8.9 Chip4 healthy_8 healthy TATGCTCCCCCTAAGGGCTTT YAPPKGF TRAV16*01 TRAJ37*01,TRAJ34*01 2.0 5.0 YAPPKGF_ 1 5457 GAD2-STA-10 GAD65 0.65 7 NEG 75 5382 4 HomoSapiens GAD2 STANTNMFTY Naive T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*01:01 B2M MHCI -14448 chip0516_822918 9.88 10.66 Chip4 healthy_6 healthy TGCAGCGTAGGACAGGCCCTTTCTCACGAGCAGTACTTC CSVGQALSHEQYF TRBV29-1*01 TRBJ2-7*01 19.0 2017.0 _CSVGQALSHEQYF 1 4677 EBV-BRLF1 EBV 0.98 1264 EBV-BRLF1 94 4583 9 EBV BRLF1 YVLDHLIVV effector memory T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*02:01 B2M MHCI -14449 chip0516_637559 11.29 11.97 Chip4 healthy_9 healthy _ 6746 3008 BZLF1-190-197 EBV 0.89 2156 BZLF1-190-197 64 2944 9 EBV BZLF1 RAKFKQLL effector memory T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-B*08:01 B2M MHCI -14450 chip0516_864060 -1.13 9.0 Chip4 healthy_9 healthy _ 6746 5656 NP413-421 FLU 0.83 16 NP413-421 96 5560 3 InfluenzaA NP ALKCKGFHV Naive T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-B*08:01 B2M MHCI -14451 chip0516_510159 10.34 10.08 Chip4 healthy_6 healthy TGTGCTGTGGCCCTCTCAAGCAAATCAACCTTT CAVALSSKSTF TRAV8-3*01 TRAJ27*01 2.0 98.0 TGCGCCAGCAGCGGGGCCGGGATGAACACTGAAGCTTTCTTT CASSGAGMNTEAFF TRBV10-2*01 TRBJ1-1*01 24.0 1291.0 CAVALSSKSTF_CASSGAGMNTEAFF 1 5805 EBV-LMP2A EBV 0.88 700 EBV-LMP2A 88 5717 9 EBV LMP2A CLGGLLTMV effector memory T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*02:01 B2M MHCI -14452 chip0516_589336 11.28 8.11 Chip4 healthy_8 healthy _ 6746 6158 EBNA3A-193-201 EBV 0.95 1022 EBNA3A-193-201 96 6062 10 EBV EBNA3A FLRGRAYGL effector memory T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-B*08:01 B2M MHCI -14453 chip0516_685515 15.04 12.8 Chip4 healthy_10 healthy TGTGCCAGCAGCCCCCAGGCTAGCGGGGGGTGGAATGAGCAGTTCTTC CASSPQASGGWNEQFF TRBV13*01 TRBJ2-1*01 1.0 11.0 _CASSPQASGGWNEQFF 1 1460 BZLF1-190-197 EBV 0.48 2156 NEG 83 1377 12 EBV BZLF1 RAKFKQLL effector T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-B*08:01 B2M MHCI -14454 chip0516_595751 15.31 9.51 Chip4 healthy_8 healthy TGTGCCAGCAGCTTAGGACAAGCCTACGAGCAGTACTTC CASSLGQAYEQYF TRBV7-8*01 TRBJ2-7*01 15.0 674.0 _CASSLGQAYEQYF 175 3192 EBNA3A-193-201 EBV 0.93 1022 EBNA3A-193-201 99 3093 12 EBV EBNA3A FLRGRAYGL effector T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-B*08:01 B2M MHCI -14455 chip0516_499611 11.05 7.49 Chip4 healthy_6 healthy _ 6746 7238 EBV-LMP2A EBV 0.96 700 EBV-LMP2A 92 7146 10 EBV LMP2A CLGGLLTMV effector memory T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*02:01 B2M MHCI -14456 chip0516_639909 10.01 9.87 Chip4 healthy_6 healthy TGCGCCAGCAGCGGGGACGGAATGAACACTGAAGCTTTCTTT CASSGDGMNTEAFF TRBV10-2*01 TRBJ1-1*01 68.0 3909.0 _CASSGDGMNTEAFF 131 8020 EBV-LMP2A EBV 0.95 700 EBV-LMP2A 76 7944 9 EBV LMP2A CLGGLLTMV effector memory T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*02:01 B2M MHCI -14457 chip0516_636298 10.65 9.11 Chip4 healthy_6 healthy TGCGCCCGCCGCGGGGCCGGAATGAACACTCCAGCTTTCTTT CARRGAGMNTPAFF TRBV10-2*01 TRBJ1-1*01 3.0 195.0 _CARRGAGMNTPAFF 1 7384 EBV-LMP2A EBV 0.95 700 EBV-LMP2A 78 7306 10 EBV LMP2A CLGGLLTMV effector memory T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*02:01 B2M MHCI -14458 chip0516_566361 12.73 8.73 Chip4 healthy_8 healthy _ 6746 3468 EBNA3A-158-166 EBV 0.9 444 EBNA3A-158-166 70 3398 10 EBV EBNA3A QAKWRLQTL effector memory T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-B*08:01 B2M MHCI -14459 chip0516_8899 10.36 9.77 Chip4 healthy_6 healthy TGCGCCAGCAGCGGGGACGGAATGAACACTGAAGCTTTCTTT CASSGDGMNTEAFF TRBV10-2*01 TRBJ1-1*01 84.0 4860.0 _CASSGDGMNTEAFF 131 6413 EBV-LMP2A EBV 1.0 700 EBV-LMP2A 77 6336 9 EBV LMP2A CLGGLLTMV effector memory T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*02:01 B2M MHCI -14460 chip0516_538944 -3.3 13.96 Chip4 healthy_9 healthy TGTGCTACGGACTGGAGTTCTGGAGGCTTCAAAACTATCTTT CATDWSSGGFKTIF TRAV17*01 TRAJ9*01 41.0 2033.0 TGTGCCAGCAGTTCGGGGAACACCGGGGAGCTGTTTTTT CASSSGNTGELFF TRBV12-3*01,TRBV12-4*01 TRBJ2-2*01 18.0 1430.0 CATDWSSGGFKTIF_CASSSGNTGELFF 1 3202 Nef13-20 HIV 0.5 19 NEG 83 3119 1 HIV-1 Nef WPTVRERM Naive T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-B*08:01 B2M MHCI -14461 chip0516_414861 13.44 8.26 Chip4 healthy_6 healthy TGTGCCAGCAGCTCCTCCGCCCTAATCAGCGATGAGCAGTTCTTC CASSSSALISDEQFF TRBV11-2*01 TRBJ2-1*01 7.0 272.0 _CASSSSALISDEQFF 6 3258 EBV-BRLF1 EBV 1.0 1264 NEG 105 3153 10 EBV BRLF1 YVLDHLIVV effector memory T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*02:01 B2M MHCI -14462 chip0516_394134 11.25 10.85 Chip4 healthy_6 healthy _ 6746 5336 EBV-LMP2A EBV 0.82 700 EBV-LMP2A 83 5253 9 EBV LMP2A CLGGLLTMV effector memory T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*02:01 B2M MHCI -14463 chip0516_165100 0.24 9.08 Chip4 healthy_8 healthy TGTGCCGTGAACACGGGCAGGAGAGCACTTACTTTT CAVNTGRRALTF TRAV12-2*01 TRAJ5*01 27.0 2304.0 TGTGCCAGCAGCTTCGGCCTAGAGGAGAACACTGAAGCTTTCTTT CASSFGLEENTEAFF TRBV7-6*01 TRBJ1-1*01 49.0 2249.0 CAVNTGRRALTF_CASSFGLEENTEAFF 1 4775 BZLF1-190-197 EBV 0.74 2156 BZLF1-190-197 82 4693 4 EBV BZLF1 RAKFKQLL Naive T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-B*08:01 B2M MHCI -14464 chip0516_102437 11.45 10.51 Chip4 healthy_6 healthy TGTGCCAGCAGCTCCTCCGCCCTAATCAGCGATGAGCAGTTCTTC CASSSSALISDEQFF TRBV11-2*01 TRBJ2-1*01 17.0 1071.0 _CASSSSALISDEQFF 6 5300 EBV-BRLF1 EBV 0.86 1264 NEG 87 5213 9 EBV BRLF1 YVLDHLIVV effector memory T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*02:01 B2M MHCI -14465 chip0516_115381 10.15 7.15 Chip4 healthy_6 healthy TGTGCTGTGGCCCTCTCAAGCAAATCAACCTTT CAVALSSKSTF TRAV8-3*01 TRAJ27*01 2.0 192.0 TGCGCCAGCAGCGGGGACGGAATGAACACTGAAGCTTTCTTT CASSGDGMNTEAFF TRBV10-2*01 TRBJ1-1*01 22.0 1460.0 CAVALSSKSTF_CASSGDGMNTEAFF 50 9555 EBV-LMP2A EBV 0.79 700 EBV-LMP2A 106 9449 10 EBV LMP2A CLGGLLTMV effector memory T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*02:01 B2M MHCI -14466 chip0516_775299 -3.5 8.17 Chip4 healthy_8 healthy TGTGCTACGGACGCATGGAACCAGGCAGGAACTGCTCTGATCTTT CATDAWNQAGTALIF TRAV17*01 TRAJ15*01 29.0 1210.0 TGTGCCAGCAACGCCGGGACAGGGACTTCACCCCTCCACTTT CASNAGTGTSPLHF TRBV9*01 TRBJ1-6*01 34.0 1833.0 CATDAWNQAGTALIF_CASNAGTGTSPLHF 1 6980 PTPRN-FLV-8 PTPRN 0.58 1 PTPRN-FLV-8 86 6894 2 HomoSapiens PTPRN FLVRSFYL Naive T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-B*08:01 B2M MHCI -14467 chip0516_695392 -3.62 8.73 Chip4 healthy_8 healthy TGTGTGGTGAGATCGGACTTTGGAAATGAGAAATTAACCTTT CVVRSDFGNEKLTF TRAV12-1*01 TRAJ48*01 21.0 1055.0 CVVRSDFGNEKLTF_ 1 5807 G6PC2-LTS-10 IGRP 0.87 59 G6PC2-LTS-10 75 5732 2 HomoSapiens G6PC2 LTSLTILQLY Naive T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*01:01 B2M MHCI -14468 chip0516_486965 13.3 11.19 Chip4 healthy_6 healthy TGTGCCGTGAGATGACAAGATCATCTTT CAVRtg??acKIIF TRAV8-1*01 TRAJ30*01 2.0 142.0 TGTGCCAGCAGCTCGGGACAGGGGGACAATGAGCAGTTCTTC CASSSGQGDNEQFF TRBV11-3*01 TRBJ2-1*01 63.0 2901.0 CAVRtg??acKIIF_CASSSGQGDNEQFF 1 4247 EBV-BLMF1 EBV 1.0 2531 EBV-BLMF1 114 4133 9 EBV BLMF1 GLCTLVAML effector memory T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*02:01 B2M MHCI -14469 chip0516_828327 9.43 11.29 Chip4 healthy_8 healthy TGCAGCGTTGGGTCGGGGGACTACGAGCAGTACTTC CSVGSGDYEQYF TRBV29-1*01 TRBJ2-7*01 48.0 5130.0 _CSVGSGDYEQYF 2 6917 BZLF1-190-197 EBV 0.58 2156 NEG 68 6849 9 EBV BZLF1 RAKFKQLL effector memory T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-B*08:01 B2M MHCI -14470 chip0516_293707 -3.15 8.34 Chip4 healthy_7 healthy TGTGCCAGCAGTTTATCGTATGGGCCCGAGCAGTACTTC CASSLSYGPEQYF TRBV27*01 TRBJ2-7*01 24.0 1855.0 _CASSLSYGPEQYF 1 6098 MART1-ALA MART1 0.43 269 NEG 60 6038 2 HomoSapiens MART1 ALAGIGILTV Naive T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*02:01 B2M MHCI -14471 chip0516_103613 5.27 11.16 Chip4 healthy_6 healthy TGTGCCAGCGGGGCCCAGGGAGGAGGCTATGGCTACACCTTC CASGAQGGGYGYTF TRBV6-1*01 TRBJ1-2*01 3.0 110.0 _CASGAQGGGYGYTF 3 7756 EBV-LMP2-FLY EBV 0.89 355 EBV-LMP2-FLY 87 7669 6 EBV LMP2 FLYALALLL central memory T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*02:01 B2M MHCI -14472 chip0516_100173 -0.61 9.62 Chip4 healthy_7 healthy TGTGCATCAACACTCTCTAACTTTGGAAATGAGAAATTAACCTTT CASTLSNFGNEKLTF TRAV12-3*01 TRAJ48*01 4.0 58.0 TGCGCCAGCAGCTCCTACCACCCCGGGGCTAGCGGGGATAGCACAGATACGCAGTATTTT CASSSYHPGASGDSTDTQYF TRBV5-1*01 TRBJ2-3*01 32.0 1774.0 CASTLSNFGNEKLTF_CASSSYHPGASGDSTDTQYF 1 4961 PGT-178 PGT 0.6 1480 NEG 70 4891 4 HomoSapiens PGT LLAGIGTVPI Naive T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*02:01 B2M MHCI -14473 chip0516_664710 10.96 11.3 Chip4 healthy_6 healthy _ 6746 4824 EBV-LMP2A EBV 0.91 700 EBV-LMP2A 85 4739 9 EBV LMP2A CLGGLLTMV effector memory T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*02:01 B2M MHCI -14474 chip0516_631684 11.2 12.11 Chip4 healthy_6 healthy TGCGCCAGCAGCGAGGACGGAATGAACACTGAAGCTTTCTTT CASSEDGMNTEAFF TRBV10-2*01 TRBJ1-1*01 51.0 3618.0 _CASSEDGMNTEAFF 10 3674 EBV-LMP2A EBV 1.0 700 EBV-LMP2A 77 3597 11 EBV LMP2A CLGGLLTMV effector T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*02:01 B2M MHCI -14475 chip0516_549569 13.05 7.44 Chip4 healthy_8 healthy TGTGCCAGCAGCTTCGGAGTGGGGGAGGGCACTGAAGCTTTCTTT CASSFGVGEGTEAFF TRBV7-3*01 TRBJ1-1*01 23.0 1494.0 _CASSFGVGEGTEAFF 3 4656 BZLF1-190-197 EBV 0.82 2156 BZLF1-190-197 89 4567 10 EBV BZLF1 RAKFKQLL effector memory T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-B*08:01 B2M MHCI -14476 chip0516_16233 10.54 10.39 Chip4 healthy_6 healthy CGCGCCAGCAGCGGGGGCGGAATGGACACTGAAGCTTTCTTT RASSGGGMDTEAFF TRBV10-2*01 TRBJ1-1*01 6.0 428.0 _RASSGGGMDTEAFF 1 6128 EBV-LMP2A EBV 0.83 700 EBV-LMP2A 106 6022 9 EBV LMP2A CLGGLLTMV effector memory T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*02:01 B2M MHCI -14477 chip0516_714974 -2.53 12.78 Chip4 healthy_9 healthy TGTGCTGTGAGTGAGGACACAGGCTTTCAGAAACTTGTATTT CAVSEDTGFQKLVF TRAV8-6*01 TRAJ8*01 1.0 18.0 CAVSEDTGFQKLVF_ 1 4020 EBNA3A-158-166 EBV 0.66 444 EBNA3A-158-166 72 3948 4 EBV EBNA3A QAKWRLQTL Naive T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-B*08:01 B2M MHCI -14478 chip0516_126455 9.58 13.16 Chip4 healthy_6 healthy _ 6746 3712 EBV-LMP2-FLY EBV 0.83 355 NEG 86 3626 6 EBV LMP2 FLYALALLL central memory T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*02:01 B2M MHCI -14479 chip0516_884369 6.37 11.89 Chip4 healthy_6 healthy _ 6746 6031 EBV-LMP2-FLY EBV 0.92 355 EBV-LMP2-FLY 89 5942 7 EBV LMP2 FLYALALLL transitional T cells between effector and memory populations PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*02:01 B2M MHCI -14480 chip0516_371825 11.21 10.96 Chip4 healthy_6 healthy TGCGCCAGCAGCGGGGACGGAATGAACACTGAAGCTTTCTTT CASSGDGMNTEAFF TRBV10-2*01 TRBJ1-1*01 29.0 1765.0 _CASSGDGMNTEAFF 131 4159 EBV-LMP2A EBV 1.0 700 EBV-LMP2A 100 4059 9 EBV LMP2A CLGGLLTMV effector memory T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*02:01 B2M MHCI -14481 chip0516_804089 -0.75 8.66 Chip4 healthy_7 healthy TGTGCCGTGAGTGCCAGACTCATGTTT CAVSARLMF TRAV12-2*01 TRAJ31*01 2.0 217.0 TGTGCCAGCAGGTTAAGGGAGGGGAGCTCCTACAATGAGCAGTTCTTC CASRLREGSSYNEQFF TRBV28*01 TRBJ2-1*01 84.0 4257.0 CAVSARLMF_CASRLREGSSYNEQFF 1 3245 PGT-178 PGT 0.69 1480 PGT-178 76 3169 4 HomoSapiens PGT LLAGIGTVPI Naive T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*02:01 B2M MHCI -14482 chip0516_852753 11.98 13.46 Chip4 healthy_6 healthy _ 6746 2810 EBV-LMP2A EBV 1.0 700 EBV-LMP2A 72 2738 11 EBV LMP2A CLGGLLTMV effector T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*02:01 B2M MHCI -14483 chip0516_236855 -4.3 10.9 Chip4 healthy_9 healthy _ 6746 4291 G6PC2-PTH-9 IGRP 0.44 7 NEG 77 4214 2 HomoSapiens G6PC2 PTHEEHLFY Naive T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*01:01 B2M MHCI -14484 chip0516_269038 -4.06 11.36 Chip4 healthy_8 healthy TGTGCTGGGCGGGTTTCAGGTGGGACCAGTGGCTCTAGGTTGACCTTT CAGRVSGGTSGSRLTF TRAV35*01 TRAJ10*01 1.0 110.0 TGTGCCGGCAGCCCCCGAGGCTGGGGCCCAGAGCAGTACTTC CAGSPRGWGPEQYF TRBV7-6*01 TRBJ2-7*01 2.0 56.0 CAGRVSGGTSGSRLTF_CAGSPRGWGPEQYF 1 4709 Nef13-20 HIV 0.8 19 NEG 79 4630 1 HIV-1 Nef WPTVRERM Naive T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-B*08:01 B2M MHCI -14485 chip0516_434245 5.51 11.93 Chip4 healthy_9 healthy TGTGCCTGGAGTAGCGGGTCATACAATGAGCAGTTCTTC CAWSSGSYNEQFF TRBV30*01 TRBJ2-1*01 15.0 1172.0 _CAWSSGSYNEQFF 1 6308 GAD2-SRK-8 GAD65 0.65 10 GAD2-SRK-8 73 6235 7 HomoSapiens GAD2 SRKHKWKL transitional T cells between effector and memory populations PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-B*08:01 B2M MHCI -14486 chip0516_381614 8.35 13.13 Chip4 healthy_8 healthy TGCATCCTGCCCCTTGCTGGTGGTACTAGCTATGGAAAGCTGACATTT CILPLAGGTSYGKLTF TRAV26-2*01 TRAJ52*01 26.0 1387.0 TGTGCCAGCAGCTTAGGACAGGCCTACGAGCAGTACTTC CASSLGQAYEQYF TRBV7-8*01 TRBJ2-7*01 18.0 1198.0 CILPLAGGTSYGKLTF_CASSLGQAYEQYF 308 4673 EBNA3A-193-201 EBV 0.8 1022 EBNA3A-193-201 85 4588 7 EBV EBNA3A FLRGRAYGL transitional T cells between effector and memory populations PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-B*08:01 B2M MHCI -14487 chip0516_628429 11.53 12.49 Chip4 healthy_6 healthy _ 6746 3568 EBV-LMP2A EBV 0.91 700 NEG 80 3488 11 EBV LMP2A CLGGLLTMV effector T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*02:01 B2M MHCI -14488 chip0516_457505 11.0 8.37 Chip4 healthy_6 healthy TGCGCCAGCAGCGGGGACGGAACGAACACTGAAGCTTTCTTT CASSGDGTNTEAFF TRBV10-2*01 TRBJ1-1*01 5.0 243.0 _CASSGDGTNTEAFF 2 7260 EBV-LMP2A EBV 0.89 700 EBV-LMP2A 98 7162 10 EBV LMP2A CLGGLLTMV effector memory T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*02:01 B2M MHCI -14489 chip0516_326322 -1.74 10.3 Chip4 healthy_7 healthy _ 6746 5408 PTPRN-172-180 PTPRN 0.86 4 NEG 72 5336 3 HomoSapiens PTPRN SLSPLQAEL Naive T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*02:01 B2M MHCI -14490 chip0516_638894 10.17 6.98 Chip4 tet_neg TGCCTCCTGCCCCTTGCTGGTGGTCCTAGCTATGGAAAGCTGACATTT CLLPLAGGPSYGKLTF TRAV26-2*01 TRAJ52*01 17.0 1188.0 TGTGCCAGCAGCTTAGGACAGGCCTACGAGCAGTACTTC CASSLGQAYEQYF TRBV7-8*01 TRBJ2-7*01 15.0 910.0 CLLPLAGGPSYGKLTF_CASSLGQAYEQYF 2 10205 EBNA3A-193-201 EBV 0.8 1022 EBNA3A-193-201 88 10117 10 EBV EBNA3A FLRGRAYGL effector memory T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-B*08:01 B2M MHCI -14491 chip0516_417869 12.34 8.06 Chip4 healthy_8 healthy _ 6746 3743 EBNA3A-193-201 EBV 0.9 1022 EBNA3A-193-201 71 3672 10 EBV EBNA3A FLRGRAYGL effector memory T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-B*08:01 B2M MHCI -14492 chip0516_148636 -3.16 8.42 Chip4 healthy_8 healthy TGTGCCAGCAGTGACTGGCAGGGGGCTACCTACGAGCAGTACTTC CASSDWQGATYEQYF TRBV6-1*01 TRBJ2-7*01 6.0 459.0 _CASSDWQGATYEQYF 1 6668 NP140-148 FLU 0.64 102 NEG 85 6583 2 InfluenzaA NP HSNLNDATY Naive T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*01:01 B2M MHCI -14493 chip0516_845343 -1.3 8.91 Chip4 healthy_7 healthy TGTGCTCTCGCCCTTGTCCTAATGCAGGCCACATCCCCACCTTT CALALVLa?tAGHIPTF TRAV6*01 TRAJ39*01 2.0 195.0 CALALVLa?tAGHIPTF_ 1 5368 HCVNS4B-1807-1816 HCV 0.95 74 HCVNS4B-1807-1816 94 5274 4 HCV NS4B LLFNILGGWV Naive T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*02:01 B2M MHCI -14494 chip0516_673943 7.84 13.51 Chip4 healthy_8 healthy _ 6746 4219 GAD2-MMI-8 GAD65 0.68 40 NEG 79 4140 7 HomoSapiens GAD2 MMIARFKM transitional T cells between effector and memory populations PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-B*08:01 B2M MHCI -14495 chip0516_665913 13.35 13.57 Chip4 healthy_6 healthy TGTGCCAGCAGCTCGGGACAGGGGGACAATGAGCAGTTCTTC CASSSGQGDNEQFF TRBV11-3*01 TRBJ2-1*01 15.0 683.0 _CASSSGQGDNEQFF 12 1393 EBV-BLMF1 EBV 0.89 2531 NEG 83 1310 11 EBV BLMF1 GLCTLVAML effector T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*02:01 B2M MHCI -14496 chip0516_7302 11.1 11.85 Chip4 healthy_6 healthy TGTGCTGTGGCCCTCTCAAGCAAATCAACCTTT CAVALSSKSTF TRAV8-3*01 TRAJ27*01 1.0 158.0 CAVALSSKSTF_ 58 4394 EBV-LMP2A EBV 0.96 700 EBV-LMP2A 77 4317 9 EBV LMP2A CLGGLLTMV effector memory T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*02:01 B2M MHCI -14497 chip0516_254670 -3.18 11.01 Chip4 healthy_9 healthy TGTGCCGTGAACATGTTAGTCCTCAACACCGACAAGCTCATCTTT CAVNMLVLNTDKLIF TRAV12-2*01 TRAJ34*01 15.0 416.0 TGCGCCAGCAGCCCCCGGACTAGCGAGTACAATGAGCAGTTCTTC CASSPRTSEYNEQFF TRBV4-1*01 TRBJ2-1*01 5.0 177.0 CAVNMLVLNTDKLIF_CASSPRTSEYNEQFF 1 3650 BZLF1-190-197 EBV 0.69 2156 BZLF1-190-197 88 3562 4 EBV BZLF1 RAKFKQLL Naive T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-B*08:01 B2M MHCI -14498 chip0516_42158 9.74 8.81 Chip4 healthy_9 healthy TGTGCCAGCAGCTTAGTCGTTGGCGGGGGTTACAATGAGCAGTTCTTC CASSLVVGGGYNEQFF TRBV7-3*01 TRBJ2-1*01 25.0 1413.0 _CASSLVVGGGYNEQFF 1 5681 BZLF1-190-197 EBV 0.88 2156 BZLF1-190-197 97 5584 8 EBV BZLF1 RAKFKQLL effector memory T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-B*08:01 B2M MHCI -14499 chip0516_164130 11.78 6.36 Chip4 healthy_6 healthy TGCGCCAGCAGCGGGGACGGAATGAACACTGAAGCTTTCTTT CASSGDGMNTEAFF TRBV10-2*01 TRBJ1-1*01 7.0 148.0 _CASSGDGMNTEAFF 131 8630 EBV-LMP2A EBV 1.0 700 EBV-LMP2A 83 8547 6 EBV LMP2A CLGGLLTMV central memory T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*02:01 B2M MHCI -14500 chip0516_97957 11.21 11.92 Chip4 healthy_6 healthy TGTGCTGTGGCCCTCTCAAGCAAATCAACCTTT CAVALSSKSTF TRAV8-3*01 TRAJ27*01 9.0 826.0 CAVALSSKSTF_ 58 3901 EBV-LMP2A EBV 0.72 700 NEG 103 3798 9 EBV LMP2A CLGGLLTMV effector memory T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*02:01 B2M MHCI -14501 chip0516_754093 10.86 10.76 Chip4 healthy_6 healthy TGCGCCAGCAGCGGGGACGGAATGAACACTGAAGCTTTCTTT CASSGDGMNTEAFF TRBV10-2*01 TRBJ1-1*01 1.0 26.0 _CASSGDGMNTEAFF 131 5028 EBV-LMP2A EBV 0.7 700 EBV-LMP2A 72 4956 9 EBV LMP2A CLGGLLTMV effector memory T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*02:01 B2M MHCI -14502 chip0516_3443 -0.34 7.75 Chip4 healthy_7 healthy TGTGCAATGAGTCCATCTAACTTTGGAAATGAGAAATTAACCTTT CAMSPSNFGNEKLTF TRAV12-3*01 TRAJ48*01 50.0 1978.0 CAMSPSNFGNEKLTF_ 4 7461 PGT-178 PGT 0.5 1480 NEG 90 7371 4 HomoSapiens PGT LLAGIGTVPI Naive T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*02:01 B2M MHCI -14503 chip0516_179872 6.02 12.78 Chip4 healthy_7 healthy TGTGCCAGTAGCCTCAGGAGCACAGATACGCAGTATTTT CASSLRSTDTQYF TRBV19*01 TRBJ2-3*01 12.0 963.0 _CASSLRSTDTQYF 1 4840 M1 FLU 0.88 1250 M1 89 4751 7 InfluenzaA M1 GILGFVFTL transitional T cells between effector and memory populations PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*02:01 B2M MHCI -14504 chip0516_117550 11.23 10.2 Chip4 healthy_6 healthy TGCGCCAGCAGCGGGGACGGAATGAACACTGAAGCTTTCTTT CASSGDGMNTEAFF TRBV10-2*01 TRBJ1-1*01 16.0 1080.0 _CASSGDGMNTEAFF 131 5503 EBV-LMP2A EBV 0.84 700 EBV-LMP2A 80 5423 9 EBV LMP2A CLGGLLTMV effector memory T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*02:01 B2M MHCI -14505 chip0516_760485 -3.36 8.91 Chip4 healthy_6 healthy TGTGCTGTCAGATCCCCACCCTTACCTCAGGAACCTACAAATACATCTTT CAVRSPPLc?cSGTYKYIF TRAV41*01 TRAJ40*01 19.0 791.0 CAVRSPPLc?cSGTYKYIF_ 1 6684 PREINS-6-14 INS 0.87 20 PREINS-6-14 83 6601 2 HomoSapiens PREINS RLLPLLALL Naive T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*02:01 B2M MHCI -14506 chip0516_723607 5.79 11.87 Chip4 healthy_6 healthy _ 6746 6109 MART1-ALA MART1 0.78 269 NEG 82 6027 7 HomoSapiens MART1 ALAGIGILTV transitional T cells between effector and memory populations PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*02:01 B2M MHCI -14507 chip0516_549738 -2.8 9.81 Chip4 healthy_6 healthy CGTGCCAGCAGCTTAGGCGGGGACGACCGGTACTTC RASSLGGDDRYF TRBV7-6*01 TRBJ2-7*01 2.0 80.0 _RASSLGGDDRYF 1 6048 IGRP-211-219 IGRP 1.0 13 NEG 77 5971 3 HomoSapiens IGRP NLFLFLFAV Naive T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*02:01 B2M MHCI -14508 chip0516_429941 -4.43 8.43 Chip4 healthy_7 healthy _ 6746 5151 PTPRN-797-805 PTPRN 0.91 12 PTPRN-797-805 107 5044 2 HomoSapiens PTPRN MVWESGCTV Naive T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*02:01 B2M MHCI -14509 chip0516_840292 9.42 11.12 Chip4 healthy_8 healthy CTGGCAGCAAGTGAAGGAGGTGCTGACGGACTCACCTTT LAASEGGADGLTF TRAV13-1*01 TRAJ45*01 12.0 1429.0 TACGCCAGCACCTTTTTACAGGGTGAGGCACTGAAGCTTTCTTT YASTFLQg?g*GTEAFF TRBV5-1*01 TRBJ1-1*01 4.0 365.0 LAASEGGADGLTF_YASTFLQg?g*GTEAFF 1 5919 BZLF1-190-197 EBV 0.85 2156 BZLF1-190-197 83 5836 9 EBV BZLF1 RAKFKQLL effector memory T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-B*08:01 B2M MHCI -14510 chip0516_617301 15.87 9.81 Chip4 healthy_8 healthy TGTGCCAGCAGCTTAGGACAGGCCTACGAGCAGTACTTC CASSLGQAYEQYF TRBV7-8*01 TRBJ2-7*01 6.0 659.0 _CASSLGQAYEQYF 175 4790 EBNA3A-193-201 EBV 0.82 1022 EBNA3A-193-201 93 4697 12 EBV EBNA3A FLRGRAYGL effector T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-B*08:01 B2M MHCI -14511 chip0516_51251 -2.77 12.83 Chip4 healthy_7 healthy TGTGCCAGCAGCCGGATGGGCGGGACGAATGAGCAGTTCTTC CASSRMGGTNEQFF TRBV7-8*01 TRBJ2-1*01 10.0 607.0 _CASSRMGGTNEQFF 1 3348 PGT-178 PGT 0.94 1480 PGT-178 71 3277 1 HomoSapiens PGT LLAGIGTVPI Naive T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*02:01 B2M MHCI -14512 chip0516_215546 9.45 12.92 Chip4 healthy_8 healthy TGCATCCTGCCCCTTGCTGGTGGTACTAGCTATGGAAAGCTGACATTT CILPLAGGTSYGKLTF TRAV26-2*01 TRAJ52*01 57.0 3538.0 CILPLAGGTSYGKLTF_ 55 4945 EBNA3A-193-201 EBV 0.86 1022 EBNA3A-193-201 70 4875 6 EBV EBNA3A FLRGRAYGL central memory T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-B*08:01 B2M MHCI -14513 chip0516_799839 11.21 9.84 Chip4 healthy_6 healthy TGCGCCAGCAGCGGGGACGGAATGAACACTGAAGCTTTCTTT CASSGDGMNTEAFF TRBV10-2*01 TRBJ1-1*01 10.0 424.0 _CASSGDGMNTEAFF 131 5547 EBV-LMP2A EBV 0.96 700 EBV-LMP2A 75 5472 9 EBV LMP2A CLGGLLTMV effector memory T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*02:01 B2M MHCI -14514 chip0516_668483 -1.24 6.8 Chip4 healthy_9 healthy _ 6746 7130 ZNT8-YAY-8 ZNT8 0.5 54 ZNT8-YAY-8 75 7055 3 HomoSapiens ZNT8 YAYAKWKL Naive T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-B*08:01 B2M MHCI -14515 chip0516_819091 6.3 12.38 Chip4 healthy_8 healthy TGTGCTGTGCAGGCACCCATGGCCAGAAGCTGCTCTTT CAVQAPa?tGQKLLF TRAV20*01 TRAJ16*01 4.0 34.0 TGTGCCAGCCGATCTAAAGGCGGACACTACAATGAGCAGTTCTTC CASRSKGGHYNEQFF TRBV12-3*01,TRBV12-4*01 TRBJ2-1*01 29.0 2051.0 CAVQAPa?tGQKLLF_CASRSKGGHYNEQFF 1 5301 BZLF1-190-197 EBV 0.92 2156 NEG 75 5226 7 EBV BZLF1 RAKFKQLL transitional T cells between effector and memory populations PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-B*08:01 B2M MHCI -14516 chip0516_731142 7.41 12.77 Chip4 healthy_8 healthy TGCATCCTGCCCCTTGCTGGTGGTACTAGCTACGGAAAGCTGACATTT CILPLAGGTSYGKLTF TRAV26-2*01 TRAJ52*01 21.0 1118.0 TGTGCCAGCAGCTTAGGACAGGCCTACGAGCAGTACTTC CASSLGQAYEQYF TRBV7-8*01 TRBJ2-7*01 12.0 834.0 CILPLAGGTSYGKLTF_CASSLGQAYEQYF 308 4982 EBNA3A-193-201 EBV 0.9 1022 EBNA3A-193-201 73 4909 7 EBV EBNA3A FLRGRAYGL transitional T cells between effector and memory populations PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-B*08:01 B2M MHCI -14517 chip0516_169331 5.74 13.34 Chip4 healthy_7 healthy TGTGCCAGTAGTCAGCGGAGCTCCTACAATGAGCAGTTCTTC CASSQRSSYNEQFF TRBV19*01 TRBJ2-1*01 3.0 129.0 _CASSQRSSYNEQFF 1 5971 M1 FLU 0.59 1250 M1 84 5887 7 InfluenzaA M1 GILGFVFTL transitional T cells between effector and memory populations PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*02:01 B2M MHCI -14518 chip0516_118848 11.51 8.95 Chip4 healthy_6 healthy TGCGCCAGCAGCGGGGACGGAATGAACACTGAAGCTTTCTTT CASSGDGMNTEAFF TRBV10-2*01 TRBJ1-1*01 16.0 1003.0 _CASSGDGMNTEAFF 131 6050 EBV-LMP2A EBV 0.89 700 EBV-LMP2A 85 5965 10 EBV LMP2A CLGGLLTMV effector memory T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*02:01 B2M MHCI -14519 chip0516_710956 9.96 7.09 Chip4 healthy_8 healthy TGTGCCAGCAGCACCCAGACAGCGCCTGATGATACGCAGTATTTT CASSTQTAPDDTQYF TRBV7-9*01 TRBJ2-3*01 54.0 2572.0 _CASSTQTAPDDTQYF 5 5844 BZLF1-190-197 EBV 0.76 2156 BZLF1-190-197 86 5758 10 EBV BZLF1 RAKFKQLL effector memory T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-B*08:01 B2M MHCI -14520 chip0516_544860 11.92 12.27 Chip4 healthy_9 healthy _ 6746 2919 BZLF1-190-197 EBV 0.97 2156 BZLF1-190-197 70 2849 11 EBV BZLF1 RAKFKQLL effector T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-B*08:01 B2M MHCI -14521 chip0516_482996 11.56 8.48 Chip4 healthy_8 healthy TGCATCCTGCCCCTTGCTGGTGGTACTAGCTATGGAAAGCTGACATTT CILPLAGGTSYGKLTF TRAV26-2*01 TRAJ52*01 45.0 2656.0 TGTGCCAGCAGCTTAGGACAGGCCTACGAGCAGTACTTC CASSLGQAYEQYF TRBV7-8*01 TRBJ2-7*01 26.0 1689.0 CILPLAGGTSYGKLTF_CASSLGQAYEQYF 308 4895 EBNA3A-193-201 EBV 0.81 1022 EBNA3A-193-201 93 4802 10 EBV EBNA3A FLRGRAYGL effector memory T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-B*08:01 B2M MHCI -14522 chip0516_815566 7.87 13.83 Chip4 healthy_7 healthy TGTGCTGTGAGAGACGAATAACAATGCCAGACTCATGTTT CAVRDEta??acNARLMF TRAV3*01 TRAJ31*01 2.0 41.0 TGCGCCAGCAGCGGGAGGTCCGCAGATACGCAGTATTTT CASSGRSADTQYF TRBV19*01 TRBJ2-3*01 9.0 860.0 CAVRDEta??acNARLMF_CASSGRSADTQYF 1 3351 M1 FLU 0.92 1250 M1 83 3268 7 InfluenzaA M1 GILGFVFTL transitional T cells between effector and memory populations PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*02:01 B2M MHCI -14523 chip0516_559827 9.7 9.69 Chip4 healthy_8 healthy TGTGCCAGCCGTCTTTCAGGAGGGGAGGACAATGAGCAGTTCTTC CASRLSGGEDNEQFF TRBV7-9*01 TRBJ2-1*01 53.0 3937.0 _CASRLSGGEDNEQFF 1 5324 ZNT8-YAY-8 ZNT8 0.86 54 ZNT8-YAY-8 92 5232 8 HomoSapiens ZNT8 YAYAKWKL effector memory T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-B*08:01 B2M MHCI -14524 chip0516_400644 7.53 13.32 Chip4 healthy_9 healthy _ 6746 2956 Pol173-181 HIV 0.61 8 NEG 93 2863 7 HIV-1 Pol GPKVKQWPL transitional T cells between effector and memory populations PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-B*08:01 B2M MHCI -14525 chip0516_358461 13.97 12.88 Chip4 healthy_8 healthy TGCATCCTGCCCCTTGCTGGTGGTACTAGCTATGGAAAGCTGACATTT CILPLAGGTSYGKLTF TRAV26-2*01 TRAJ52*01 35.0 1633.0 TGTGCCAGCAGCTTAGGACAGGCCTACGAGCAGTACTTC CASSLGQAYEQYF TRBV7-8*01 TRBJ2-7*01 14.0 881.0 CILPLAGGTSYGKLTF_CASSLGQAYEQYF 308 3586 EBNA3A-193-201 EBV 0.88 1022 EBNA3A-193-201 75 3511 12 EBV EBNA3A FLRGRAYGL effector T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-B*08:01 B2M MHCI -14526 chip0516_58774 13.09 7.35 Chip4 healthy_8 healthy TGTGCCAGCAGCTTAGGACAGGCCTACGAGCAGTACTTC CASSLGQAYEQYF TRBV7-8*01 TRBJ2-7*01 16.0 1006.0 _CASSLGQAYEQYF 175 3215 EBNA3A-193-201 EBV 0.9 1022 EBNA3A-193-201 87 3128 10 EBV EBNA3A FLRGRAYGL effector memory T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-B*08:01 B2M MHCI -14527 chip0516_781828 -2.36 8.93 Chip4 healthy_6 healthy TGTGCCAGCAGCTTGGCTAGAAACTACGAGCAGTACTTC CASSLARNYEQYF TRBV5-6*01 TRBJ2-7*01 24.0 1788.0 _CASSLARNYEQYF 1 6672 PGT-178 PGT 0.9 1480 PGT-178 88 6584 2 HomoSapiens PGT LLAGIGTVPI Naive T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*02:01 B2M MHCI -14528 chip0516_883521 8.5 11.7 Chip4 healthy_6 healthy TGTGCCAGCAGCCCTCCCTACAATGAGCAGTTCTTC CASSPPYNEQFF TRBV7-8*01 TRBJ2-1*01 10.0 837.0 _CASSPPYNEQFF 4 5884 ZNT8-115-123 ZNT8 1.0 74 ZNT8-115-123 74 5810 7 HomoSapiens ZNT8 LLSLFSLWL transitional T cells between effector and memory populations PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*02:01 B2M MHCI -14529 chip0516_470557 12.1 13.83 Chip4 healthy_6 healthy TGTGCTGTGGCCCTCTCAAGCAAATCAACCTTT CAVALSSKSTF TRAV8-3*01 TRAJ27*01 5.0 358.0 CAVALSSKSTF_ 58 2006 EBV-LMP2A EBV 1.0 700 EBV-LMP2A 76 1930 11 EBV LMP2A CLGGLLTMV effector T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*02:01 B2M MHCI -14530 chip0516_296039 11.31 12.22 Chip4 healthy_6 healthy _ 6746 4130 EBV-LMP2A EBV 0.97 700 EBV-LMP2A 88 4042 11 EBV LMP2A CLGGLLTMV effector T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*02:01 B2M MHCI -14531 chip0516_831179 12.4 13.18 Chip4 healthy_6 healthy TGTGCGGTGCAGGCTCGAACTCAAATTCCGGGTATGCACTCAACTTC CAVQARTca?NSGYALNF TRAV20*01 TRAJ41*01 6.0 335.0 CAVQARTca?NSGYALNF_ 1 3115 EBV-BRLF1 EBV 1.0 1264 NEG 71 3044 11 EBV BRLF1 YVLDHLIVV effector T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*02:01 B2M MHCI -14532 chip0516_780681 8.36 12.94 Chip4 healthy_6 healthy _ 6746 3857 EBV-BLMF1 EBV 0.88 2531 EBV-BLMF1 60 3797 7 EBV BLMF1 GLCTLVAML transitional T cells between effector and memory populations PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*02:01 B2M MHCI -14533 chip0516_160249 -3.46 9.53 Chip4 healthy_8 healthy TGCCTCGTGGGAGACACAAAGCTTACTTTTGAAATGTGCCCTTAACCATT CLVGDTKLa?cF*NVPLTI TRAV4*01 TRAJ48*01 17.0 978.0 TGTGCCAGCAGCCAAGGACAGCTTGAAGCTTTCTTT CASSQGQLEAFF TRBV12-3*01,TRBV12-4*01 TRBJ1-1*01 6.0 262.0 CLVGDTKLa?cF*NVPLTI_CASSQGQLEAFF 1 5704 ZNT8-YAK-9 ZNT8 0.69 59 ZNT8-YAK-9 83 5621 2 HomoSapiens ZNT8 YAKWKLCSA Naive T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-B*08:01 B2M MHCI -14534 chip0516_871096 -3.1 9.7 Chip4 healthy_7 healthy _ 6746 4790 MART1-ALA MART1 0.59 269 MART1-ALA 76 4714 2 HomoSapiens MART1 ALAGIGILTV Naive T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*02:01 B2M MHCI -14535 chip0516_541785 11.91 7.93 Chip4 healthy_9 healthy _ 6746 4100 BZLF1-190-197 EBV 0.6 2156 BZLF1-190-197 95 4005 10 EBV BZLF1 RAKFKQLL effector memory T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-B*08:01 B2M MHCI -14536 chip0516_552453 -3.26 13.14 Chip4 healthy_8 healthy _ 6746 3762 PTPRN-HAR-8 PTPRN 0.91 13 NEG 77 3685 1 HomoSapiens PTPRN HARIKLKV Naive T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-B*08:01 B2M MHCI -14537 chip0516_785118 11.71 8.07 Chip4 healthy_6 healthy _ 6746 5820 EBV-LMP2A EBV 0.9 700 EBV-LMP2A 77 5743 10 EBV LMP2A CLGGLLTMV effector memory T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*02:01 B2M MHCI -14538 chip0516_12311 -3.6 11.26 Chip4 healthy_6 healthy TGTGCCAGTAGTATAGGAGCCGGACAGCAAGAGACCCAGTACTTC CASSIGAGQQETQYF TRBV19*01 TRBJ2-5*01 11.0 770.0 _CASSIGAGQQETQYF 1 4618 IGRP-215-223 IGRP 0.8 5 NEG 67 4551 1 HomoSapiens IGRP FLFAVGFYL Naive T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*02:01 B2M MHCI -14539 chip0516_556835 12.36 13.0 Chip4 healthy_6 healthy TGTGCTGTGGCCCTCTCAAGCAAATCAACCTTT CAVALSSKSTF TRAV8-3*01 TRAJ27*01 1.0 115.0 CAVALSSKSTF_ 58 3967 EBV-LMP2A EBV 1.0 700 EBV-LMP2A 83 3884 11 EBV LMP2A CLGGLLTMV effector T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*02:01 B2M MHCI -14540 chip0516_255629 -3.22 7.79 Chip4 healthy_8 healthy TGTGCTCTGAAGGTCGGAAATGCAGGCAACATGCTCACCTTT CALKVGNAGNMLTF TRAV19*01 TRAJ39*01 37.0 2290.0 TGTGCCAGCAGCTCTCCTGACAGCCACTACGAGCAGTACTTC CASSSPDSHYEQYF TRBV7-9*01 TRBJ2-7*01 14.0 677.0 CALKVGNAGNMLTF_CASSSPDSHYEQYF 1 7355 G6PC2-NLI-9 IGRP 0.86 7 G6PC2-NLI-9 82 7273 2 HomoSapiens G6PC2 NLIFKWKSI Naive T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-B*08:01 B2M MHCI -14541 chip0516_108299 12.53 8.84 Chip4 healthy_8 healthy _ 6746 3605 EBNA3A-193-201 EBV 0.82 1022 EBNA3A-193-201 75 3530 10 EBV EBNA3A FLRGRAYGL effector memory T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-B*08:01 B2M MHCI -14542 chip0516_171947 -3.05 8.98 Chip4 healthy_6 healthy TGCGCCAGCAGCCAAGATGGACAGGACGGAGAAAAACTGTTTTTT CASSQDGQDGEKLFF TRBV4-3*01 TRBJ1-4*01 38.0 1889.0 _CASSQDGQDGEKLFF 1 5695 ZNT8-115-123 ZNT8 0.96 74 ZNT8-115-123 84 5611 2 HomoSapiens ZNT8 LLSLFSLWL Naive T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*02:01 B2M MHCI -14543 chip0516_384633 4.74 11.82 Chip4 healthy_8 healthy TGTGCTGTGGACATGCGCTTT CAVDMRF TRAV1-2*01 TRAJ43*01 6.0 1183.0 CAVDMRF_ 1 3720 NP413-421 FLU 1.0 16 NP413-421 78 3642 6 InfluenzaA NP ALKCKGFHV central memory T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-B*08:01 B2M MHCI -14544 chip0516_731759 -2.65 9.11 Chip4 healthy_9 healthy TGTGCCACCCTGGAGCGAGGAGGTATGAACACTGAAGCTTTCTTT CATLERGGMNTEAFF TRBV10-3*01 TRBJ1-1*01 2.0 7.0 _CATLERGGMNTEAFF 1 6596 GFAP-HLK-8 GFAP 0.62 28 GFAP-HLK-8 68 6528 2 HomoSapiens GFAP HLKRNIVV Naive T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-B*08:01 B2M MHCI -14545 chip0516_807312 -3.06 8.33 Chip4 healthy_8 healthy TGTGCTGTCACCATGAACACCGGTAACCAGTTCTATTTT CAVTMNTGNQFYF TRAV41*01 TRAJ49*01 21.0 1869.0 CAVTMNTGNQFYF_ 1 5535 GFAP-LLN-8 GFAP 0.48 6 GFAP-LLN-8 70 5465 2 HomoSapiens GFAP LLNVKLAL Naive T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-B*08:01 B2M MHCI -14546 chip0516_608627 4.76 11.01 Chip4 healthy_6 healthy _ 6746 4525 EBV-LMP2-FLY EBV 0.95 355 EBV-LMP2-FLY 68 4457 6 EBV LMP2 FLYALALLL central memory T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*02:01 B2M MHCI -14547 chip0516_386902 10.66 11.87 Chip4 healthy_6 healthy TGCGCCAGCAGCGGGGACGGAATGAACACTGAAGCTTTCTTT CASSGDGMNTEAFF TRBV10-2*01 TRBJ1-1*01 6.0 262.0 _CASSGDGMNTEAFF 131 4967 EBV-LMP2A EBV 0.96 700 EBV-LMP2A 98 4869 9 EBV LMP2A CLGGLLTMV effector memory T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*02:01 B2M MHCI -14548 chip0516_858068 11.57 10.38 Chip4 healthy_6 healthy TGTGCTGTGGCCCTCTCAAGCAAATCAACCTTT CAVALSSKSTF TRAV8-3*01 TRAJ27*01 2.0 100.0 CAVALSSKSTF_ 58 4335 EBV-LMP2A EBV 0.93 700 EBV-LMP2A 75 4260 9 EBV LMP2A CLGGLLTMV effector memory T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*02:01 B2M MHCI -14549 chip0516_224256 13.01 13.36 Chip4 healthy_6 healthy _ 6746 2564 EBV-BLMF1 EBV 0.74 2531 NEG 83 2481 11 EBV BLMF1 GLCTLVAML effector T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*02:01 B2M MHCI -14550 chip0516_760295 11.99 7.21 Chip4 healthy_6 healthy _ 6746 5662 EBV-LMP2A EBV 0.97 700 EBV-LMP2A 84 5578 10 EBV LMP2A CLGGLLTMV effector memory T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*02:01 B2M MHCI -14551 chip0516_322940 9.59 12.96 Chip4 healthy_8 healthy TGTGCCAGCAGTTTAATGGGGACAGGGGGCTTGAGTGAAAAACTGTTTTTT CASSLMGTGGLSEKLFF TRBV28*01 TRBJ1-4*01 8.0 225.0 _CASSLMGTGGLSEKLFF 18 4390 EBNA3A-158-166 EBV 0.84 444 EBNA3A-158-166 88 4302 6 EBV EBNA3A QAKWRLQTL central memory T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-B*08:01 B2M MHCI -14552 chip0516_11885 -2.12 15.97 Chip4 healthy_7 healthy TGTGCGGGTGAGAGAGATGACAAGATCATCTTT CAGERDDKIIF TRAV29/DV5*01 TRAJ30*01 1.0 52.0 CAGERDDKIIF_ 1 1279 HCVNS4B-1807-1816 HCV 0.88 74 HCVNS4B-1807-1816 64 1215 1 HCV NS4B LLFNILGGWV Naive T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*02:01 B2M MHCI -14553 chip0516_803443 -2.48 9.39 Chip4 healthy_8 healthy TGTGCCAGCAGCTTAAATTGGGGGGGGACCTACGAGCAGTACTTC CASSLNWGGTYEQYF TRBV7-3*01 TRBJ2-7*01 26.0 1277.0 _CASSLNWGGTYEQYF 1 6430 IAPP-LNH-9 IAPP 0.55 15 IAPP-LNH-9 95 6335 3 HomoSapiens IAPP LNHLKATPI Naive T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-B*08:01 B2M MHCI -14554 chip0516_535324 -4.96 9.53 Chip4 healthy_7 healthy _ 6746 5724 MART1-ALA MART1 0.67 269 NEG 75 5649 2 HomoSapiens MART1 ALAGIGILTV Naive T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*02:01 B2M MHCI -14555 chip0516_446879 8.11 11.31 Chip4 healthy_6 healthy TGTGCAATGAGCGCGGCTGGAGCCAATAGTAAGCTGACATTT CAMSAAGANSKLTF TRAV12-3*01 TRAJ56*01 23.0 1807.0 CAMSAAGANSKLTF_ 2 5418 ZNT8-115-123 ZNT8 0.93 74 NEG 79 5339 7 HomoSapiens ZNT8 LLSLFSLWL transitional T cells between effector and memory populations PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*02:01 B2M MHCI -14556 chip0516_569400 9.76 13.1 Chip4 healthy_8 healthy _ 6746 4144 EBNA3A-193-201 EBV 0.64 1022 EBNA3A-193-201 84 4060 6 EBV EBNA3A FLRGRAYGL central memory T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-B*08:01 B2M MHCI -14557 chip0516_47320 -3.11 9.05 Chip4 healthy_7 healthy TGTGCCAGCAGTTTAGGCCCGGAGCAGTTCTTC CASSLGPEQFF TRBV12-3*01,TRBV12-4*01 TRBJ2-1*01 2.0 124.0 _CASSLGPEQFF 1 5623 MART1-ALA MART1 0.85 269 MART1-ALA 69 5554 2 HomoSapiens MART1 ALAGIGILTV Naive T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*02:01 B2M MHCI -14558 chip0516_472985 11.57 12.58 Chip4 healthy_6 healthy TGTGCTGTTCTAATGGATAGCAACTATCAGTTAATCTGG CAVLMDSNYQLIW TRAV12-3*01 TRAJ33*01 1.0 17.0 TGCGCCAGCAGCGGGGACGGAATGAACACTGAAGCTTTCTTT CASSGDGMNTEAFF TRBV10-2*01 TRBJ1-1*01 15.0 716.0 CAVLMDSNYQLIW_CASSGDGMNTEAFF 20 3583 EBV-LMP2A EBV 0.93 700 NEG 96 3487 11 EBV LMP2A CLGGLLTMV effector T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*02:01 B2M MHCI -14559 chip0516_471853 -2.29 14.66 Chip4 healthy_8 healthy TGTGCAATGAGAGAGCTGGACCGGGGAGGAAGCCAAGGAAATCTCATCTTT CAMRELDRGGSQGNLIF TRAV14/DV4*01 TRAJ42*01 47.0 1932.0 CAMRELDRGGSQGNLIF_ 1 2669 ZNT8-YAY-8 ZNT8 1.0 54 NEG 69 2600 1 HomoSapiens ZNT8 YAYAKWKL Naive T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-B*08:01 B2M MHCI -14560 chip0516_613119 10.98 11.22 Chip4 healthy_6 healthy TGTGCTGTTCTAATGGATAGCAACTATCAGTTAATCTGG CAVLMDSNYQLIW TRAV21*01 TRAJ33*01 21.0 1938.0 TGCGCCAGCAGCGGGGACGAAATGAACACTGAAGCTTTCTTT CASSGDEMNTEAFF TRBV10-2*01 TRBJ1-1*01 1.0 42.0 CAVLMDSNYQLIW_CASSGDEMNTEAFF 1 5303 EBV-LMP2A EBV 0.96 700 EBV-LMP2A 81 5222 9 EBV LMP2A CLGGLLTMV effector memory T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*02:01 B2M MHCI -14561 chip0516_639528 11.21 12.65 Chip4 healthy_8 healthy TGCATCCTGCCCCTTGCTGGTGGTACTAGCTATGGAAAGCTGACATTT CILPLAGGTSYGKLTF TRAV26-2*01 TRAJ52*01 12.0 574.0 TGTGCCAGCAGCTTAGGACAGGCCTACGAGCAGTACTTC CASSLGQAYEQYF TRBV7-8*01 TRBJ2-7*01 45.0 2334.0 CILPLAGGTSYGKLTF_CASSLGQAYEQYF 308 3607 EBNA3A-193-201 EBV 0.84 1022 EBNA3A-193-201 85 3522 11 EBV EBNA3A FLRGRAYGL effector T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-B*08:01 B2M MHCI -14562 chip0516_604248 11.16 10.82 Chip4 healthy_6 healthy TGTGCTGTGGCCCTCTCAAGCAAATCAACCTTT CAVALSSKSTF TRAV8-3*01 TRAJ27*01 5.0 432.0 CAVALSSKSTF_ 58 3975 EBV-LMP2A EBV 0.92 700 NEG 71 3904 9 EBV LMP2A CLGGLLTMV effector memory T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*02:01 B2M MHCI -14563 chip0516_539776 10.55 10.36 Chip4 healthy_6 healthy _ 6746 5301 EBV-LMP2A EBV 0.95 700 EBV-LMP2A 74 5227 9 EBV LMP2A CLGGLLTMV effector memory T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*02:01 B2M MHCI -14564 chip0516_420030 9.57 13.16 Chip4 healthy_8 healthy TACATCCTGCCCCTTGCTGGTGGTACTGGCTATGTAAAGCTCACCTTT YILPLAGGTGYVKLTF TRAV26-2*01 TRAJ52*01 9.0 609.0 TGTGCCAGCAGCTTAGGACAGGCCTACGAGCAGTACTTC CASSLGQAYEQYF TRBV7-8*01 TRBJ2-7*01 2.0 136.0 YILPLAGGTGYVKLTF_CASSLGQAYEQYF 1 3857 EBNA3A-193-201 EBV 0.87 1022 EBNA3A-193-201 82 3775 6 EBV EBNA3A FLRGRAYGL central memory T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-B*08:01 B2M MHCI -14565 chip0516_130455 11.08 9.33 Chip4 healthy_6 healthy TGCGCCAGCAGCGGGGACGGAATGAACACTGAAGCTTTCTTT CASSGDGMNTEAFF TRBV10-2*01 TRBJ1-1*01 36.0 1472.0 _CASSGDGMNTEAFF 131 6735 EBV-LMP2A EBV 0.79 700 EBV-LMP2A 67 6668 9 EBV LMP2A CLGGLLTMV effector memory T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*02:01 B2M MHCI -14566 chip0516_21193 11.35 11.43 Chip4 healthy_6 healthy CTGCGCCAGCAGCGGGGCCGGAATGAACACTGAAGCTTTCTTT LRQQRGR??aMNTEAFF TRBV10-2*01 TRBJ1-1*01 20.0 1129.0 _LRQQRGR??aMNTEAFF 1 4445 EBV-LMP2A EBV 0.87 700 EBV-LMP2A 78 4367 9 EBV LMP2A CLGGLLTMV effector memory T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*02:01 B2M MHCI -14567 chip0516_22209 11.29 10.46 Chip4 healthy_6 healthy TGCGCCAGCAGCGGGGGCGGAGTGATCGCTGAAGCTTTCTTT CASSGGGVIAEAFF TRBV10-2*01 TRBJ1-1*01 3.0 144.0 _CASSGGGVIAEAFF 1 5160 EBV-LMP2A EBV 1.0 700 EBV-LMP2A 82 5078 9 EBV LMP2A CLGGLLTMV effector memory T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*02:01 B2M MHCI -14568 chip0516_818184 -2.96 9.54 Chip4 healthy_8 healthy CTGGCAGCAAGCGCCGGGATTTGAATGGAGGAAGCCAAGGACATCTCATCTTT LAASAGI*at?GGSQGHLIF TRAV29/DV5*01 TRAJ42*01 14.0 773.0 TGCGCCAGCAGCCAAGAGTGGACGGCGATGGCGACCCAGTACTTC CASSQEWTAMATQYF TRBV4-1*01 TRBJ2-5*01 19.0 1151.0 LAASAGI*at?GGSQGHLIF_CASSQEWTAMATQYF 1 7421 Nef13-20 HIV 0.43 19 NEG 76 7345 2 HIV-1 Nef WPTVRERM Naive T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-B*08:01 B2M MHCI -14569 chip0516_306155 -1.82 10.04 Chip4 healthy_9 healthy TGTGCCAGCAGCTTACAGGGGATCACTGAAGCTTTCTTT CASSLQGITEAFF TRBV5-6*01 TRBJ1-1*01 15.0 905.0 _CASSLQGITEAFF 1 5807 GAD2-SRK-8 GAD65 0.41 10 NEG 83 5724 3 HomoSapiens GAD2 SRKHKWKL Naive T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-B*08:01 B2M MHCI -14570 chip0516_717372 11.63 9.18 Chip4 healthy_8 healthy TGTGCCAGCAGCTTAGGACAGGCCTACGAGCAGTACTTC CASSLGQAYEQYF TRBV7-8*01 TRBJ2-7*01 14.0 623.0 _CASSLGQAYEQYF 175 5043 EBNA3A-193-201 EBV 0.75 1022 EBNA3A-193-201 91 4952 10 EBV EBNA3A FLRGRAYGL effector memory T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-B*08:01 B2M MHCI -14571 chip0516_447769 5.76 11.88 Chip4 healthy_8 healthy TGCGCTGCACGGGCCCAGAAGCTGGTATTT CAARAQKLVF TRAV14/DV4*01 TRAJ54*01 12.0 1726.0 CAARAQKLVF_ 1 6535 NP30-38 FLU 0.88 72 NP30-38 90 6445 7 InfluenzaA NP RPIIRPATL transitional T cells between effector and memory populations PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-B*08:01 B2M MHCI -14572 chip0516_273363 9.66 13.3 Chip4 healthy_6 healthy TGTGCTCCGGCCGCCCCTTCAGCCTACCGCACCCTCACCCTT CAPAAPSAYRTLTL TRAV17*01 TRAJ11*01 8.0 485.0 CAPAAPSAYRTLTL_ 1 2853 EBV-LMP2-FLY EBV 1.0 355 NEG 72 2781 6 EBV LMP2 FLYALALLL central memory T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*02:01 B2M MHCI -14573 chip0516_696706 6.28 10.38 Chip4 healthy_6 healthy TGTGCCAGCAGCTACTACAGGGAGAGGAACACTGAAGCTTTCTTT CASSYYRERNTEAFF TRBV5-6*01 TRBJ1-1*01 5.0 197.0 _CASSYYRERNTEAFF 1 8782 EBV-LMP2-FLY EBV 1.0 355 EBV-LMP2-FLY 76 8706 6 EBV LMP2 FLYALALLL central memory T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*02:01 B2M MHCI -14574 chip0516_546866 -3.7 10.77 Chip4 healthy_8 healthy TGTGCAATGGGGTACAGCAGTGCTTCCAAGATAATCTTT CAMGYSSASKIIF TRAV12-3*01 TRAJ3*01 37.0 2894.0 CAMGYSSASKIIF_ 1 4109 LMP2A-CPL EBV 0.86 44 LMP2A-CPL 70 4039 2 EBV LMP2A CPLSKILL Naive T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-B*08:01 B2M MHCI -14575 chip0516_803906 -2.91 12.68 Chip4 healthy_7 healthy _ 6746 3873 PREINS-34-42 INS 0.56 9 NEG 69 3804 1 HomoSapiens PREINS HLVEALYLV Naive T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*02:01 B2M MHCI -14576 chip0516_320605 6.9 12.84 Chip4 healthy_8 healthy _ 6746 4171 NP30-38 FLU 0.76 72 NP30-38 74 4097 7 InfluenzaA NP RPIIRPATL transitional T cells between effector and memory populations PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-B*08:01 B2M MHCI -14577 chip0516_221662 11.37 10.86 Chip4 healthy_6 healthy _ 6746 5122 EBV-LMP2A EBV 0.9 700 EBV-LMP2A 86 5036 9 EBV LMP2A CLGGLLTMV effector memory T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*02:01 B2M MHCI -14578 chip0516_361265 5.39 9.19 Chip4 healthy_6 healthy TGTGCCAGCAGTTACCTGGGGGGGGGTTTTGGCTACACCTTC CASSYLGGGFGYTF TRBV6-5*01 TRBJ1-2*01 14.0 1430.0 _CASSYLGGGFGYTF 3 6581 EBV-LMP2-FLY EBV 0.8 355 NEG 86 6495 6 EBV LMP2 FLYALALLL central memory T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*02:01 B2M MHCI -14579 chip0516_487699 12.42 8.18 Chip4 healthy_8 healthy TGTGCCAGCAGTTTAATGGGGACAGGGGGCTTGAGTGAAAAACTGTTTTTT CASSLMGTGGLSEKLFF TRBV28*01 TRBJ1-4*01 13.0 202.0 _CASSLMGTGGLSEKLFF 18 3867 EBNA3A-158-166 EBV 0.93 444 NEG 85 3782 10 EBV EBNA3A QAKWRLQTL effector memory T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-B*08:01 B2M MHCI -14580 chip0516_860296 5.98 13.9 Chip4 healthy_7 healthy TGTGCCAGTAGTGTCTTGGACGGCCCCAGGGGAAAACTGTTTTTT CASSVLDGPRGKLFF TRBV19*01 TRBJ1-4*01 20.0 680.0 _CASSVLDGPRGKLFF 2 4949 M1 FLU 1.0 1250 M1 70 4879 7 InfluenzaA M1 GILGFVFTL transitional T cells between effector and memory populations PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*02:01 B2M MHCI -14581 chip0516_368431 11.52 11.77 Chip4 healthy_6 healthy _ 6746 3986 EBV-LMP2A EBV 0.6 700 EBV-LMP2A 92 3894 9 EBV LMP2A CLGGLLTMV effector memory T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*02:01 B2M MHCI -14582 chip0516_231075 11.71 13.14 Chip4 healthy_6 healthy _ 6746 2727 EBV-LMP2A EBV 1.0 700 NEG 87 2640 11 EBV LMP2A CLGGLLTMV effector T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*02:01 B2M MHCI -14583 chip0516_241448 13.13 13.58 Chip4 healthy_8 healthy TGCGTCCTGCCCCTTGCTGGTGGTGCTAGCTATGGAAAGCTGACATTT CVLPLAGGASYGKLTF TRAV26-2*01 TRAJ52*01 26.0 1686.0 TGTGCCAGCAGCTTAGGACAGGCCTACGAGCAGTACTTC CASSLGQAYEQYF TRBV7-8*01 TRBJ2-7*01 29.0 2004.0 CVLPLAGGASYGKLTF_CASSLGQAYEQYF 1 1884 EBNA3A-193-201 EBV 0.82 1022 EBNA3A-193-201 73 1811 11 EBV EBNA3A FLRGRAYGL effector T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-B*08:01 B2M MHCI -14584 chip0516_548471 12.98 8.18 Chip4 healthy_6 healthy _ 6746 4198 EBV-LMP2A EBV 0.96 700 EBV-LMP2A 95 4103 10 EBV LMP2A CLGGLLTMV effector memory T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*02:01 B2M MHCI -14585 chip0516_565604 5.36 9.2 Chip4 healthy_6 healthy TGTGTGGTGCCTGCATCAGGAGGAAGCTACATACCTACATTT CVVPASGGSYIPTF TRAV12-1*01 TRAJ6*01 42.0 2381.0 CVVPASGGSYIPTF_ 1 5197 EBV-LMP1-2 EBV 0.47 41 NEG 69 5128 6 EBV LMP1 YLQQNWWTL central memory T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*02:01 B2M MHCI -14586 chip0516_482736 5.39 9.49 Chip4 healthy_7 healthy TGTGCTACGGTAGGGACTTCAGGATACAGCACCCTCACCTTT CATVGTSGYSTLTF TRAV17*01 TRAJ11*01 33.0 2015.0 TGTGCCAGCAGCGGACAGGGAGGGCACTATGGCTACACCTTC CASSGQGGHYGYTF TRBV6-1*01 TRBJ1-2*01 17.0 1268.0 CATVGTSGYSTLTF_CASSGQGGHYGYTF 1 4439 EBV-LMP2-FLY EBV 0.88 355 NEG 74 4365 6 EBV LMP2 FLYALALLL central memory T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*02:01 B2M MHCI -14587 chip0516_490858 -3.34 8.9 Chip4 healthy_6 healthy TGTGCCAGCAGCCCCCCTGAGACGGGCGTCAATGAGCAGTTCTTC CASSPPETGVNEQFF TRBV3-1*01 TRBJ2-1*01 20.0 2010.0 _CASSPPETGVNEQFF 1 7183 PGT-178 PGT 0.94 1480 PGT-178 72 7111 2 HomoSapiens PGT LLAGIGTVPI Naive T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*02:01 B2M MHCI -14588 chip0516_604361 -1.66 10.32 Chip4 healthy_7 healthy TGCAGCGTAGACCCGGGGGCTAGGGGGGGCAATGAGCAGTTCTTC CSVDPGARGGNEQFF TRBV29-1*01 TRBJ2-1*01 109.0 9426.0 _CSVDPGARGGNEQFF 1 4827 ZNT8-153-161 ZNT8 0.89 41 ZNT8-153-161 73 4754 3 HomoSapiens ZNT8 VVTGVLVYL Naive T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*02:01 B2M MHCI -14589 chip0516_194403 11.84 8.1 Chip4 healthy_8 healthy TGCATCCTGCCCCTTGCTGGTGGTACTAGCTATGGAAAGCTGACATTT CILPLAGGTSYGKLTF TRAV26-2*01 TRAJ52*01 41.0 2031.0 TGTGCCAGCAGCTTAGGACAGGCCTACGAGCAGTACTTC CASSLGQAYEQYF TRBV7-8*01 TRBJ2-7*01 6.0 320.0 CILPLAGGTSYGKLTF_CASSLGQAYEQYF 308 4401 EBNA3A-193-201 EBV 0.83 1022 EBNA3A-193-201 90 4311 10 EBV EBNA3A FLRGRAYGL effector memory T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-B*08:01 B2M MHCI -14590 chip0516_852107 -4.04 7.61 Chip4 healthy_8 healthy _ 6746 5919 G6PC2-NLI-8 IGRP 0.85 32 G6PC2-NLI-8 67 5852 2 HomoSapiens G6PC2 NLIFKWIL Naive T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-B*08:01 B2M MHCI -14591 chip0516_690459 11.37 10.86 Chip4 healthy_6 healthy TGTGCCATGAAGGACTTTCAGAAACTTGTATTT CAMKDFQKLVF TRAV8-1*01 TRAJ8*01 19.0 2105.0 CAMKDFQKLVF_ 1 4380 EBV-BRLF1 EBV 0.48 1264 EBV-BRLF1 81 4299 9 EBV BRLF1 YVLDHLIVV effector memory T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*02:01 B2M MHCI -14592 chip0516_341822 5.34 11.36 Chip4 healthy_6 healthy TGTGCCCGCCGCTTTCCGACAGGGGGGCACAGATACGCAGTATTTT CARRFPTgg??ggGTDTQYF TRBV5-6*01 TRBJ2-3*01 8.0 618.0 _CARRFPTgg??ggGTDTQYF 1 6703 EBV-LMP1-1 EBV 0.95 237 EBV-LMP1-1 68 6635 6 EBV LMP1 YLLEMLWRL central memory T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*02:01 B2M MHCI -14593 chip0516_137775 -3.05 9.71 Chip4 healthy_8 healthy TGTGCTCTGAGTGACAGCTGGGGGAAATTGCAGTTT CALSDSWGKLQF TRAV19*01 TRAJ24*01 10.0 698.0 CALSDSWGKLQF_ 1 5242 gp160-2-10 HIV 0.65 6 NEG 75 5167 2 HIV-1 gp160 RVKEKYQHL Naive T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-B*08:01 B2M MHCI -14594 chip0516_783252 -0.3 6.54 Chip4 tet_neg _ 6746 12141 ZNT8-YAK-9 ZNT8 0.53 59 ZNT8-YAK-9 67 12074 3 HomoSapiens ZNT8 YAKWKLCSA Naive T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-B*08:01 B2M MHCI -14595 chip0516_272566 -3.81 11.26 Chip4 healthy_8 healthy TGTGCTGTGAGAGATCCCGGTGCTACCAACACGCTCATCTTT CAVRDPGATNTLIF TRAV1-2*01 TRAJ32*01 1.0 105.0 TGCGCCAGCAGCTGGGGGACGGTGAACACTGAAGCTTTCTTT CASSWGTVNTEAFF TRBV5-1*01 TRBJ1-1*01 8.0 436.0 CAVRDPGATNTLIF_CASSWGTVNTEAFF 1 5547 GAD2-EAK-10 GAD65 0.81 14 GAD2-EAK-10 83 5464 1 HomoSapiens GAD2 EAKQKGFVPF Naive T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-B*08:01 B2M MHCI -14596 chip0516_853455 -3.6 12.88 Chip4 healthy_9 healthy _ 6746 4331 GAD2-EAK-10 GAD65 0.94 14 GAD2-EAK-10 67 4264 1 HomoSapiens GAD2 EAKQKGFVPF Naive T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-B*08:01 B2M MHCI -14597 chip0516_9906 11.78 7.72 Chip4 healthy_6 healthy _ 6746 4921 EBV-LMP2A EBV 1.0 700 EBV-LMP2A 87 4834 10 EBV LMP2A CLGGLLTMV effector memory T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*02:01 B2M MHCI -14598 chip0516_324863 12.81 10.58 Chip4 healthy_7 healthy TGTGCAGGAGCGCCCTATGGAGGAAGCCAAGGAAATCTCATCTTT CAGAPYGGSQGNLIF TRAV27*01 TRAJ42*01 5.0 137.0 TGCGCCAGCAGTCATGGGAACTATGGCTACACCTTC CASSHGNYGYTF TRBV5-1*01 TRBJ1-2*01 24.0 2005.0 CAGAPYGGSQGNLIF_CASSHGNYGYTF 1 3274 MART1-ALA MART1 0.59 269 NEG 75 3199 9 HomoSapiens MART1 ALAGIGILTV effector memory T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*02:01 B2M MHCI -14599 chip0516_532145 -2.29 10.04 Chip4 healthy_7 healthy TGTGCAGGCGCAAGCGAGGGGAGCCCAGAAGCTGGTATTT CAGASEgg??gaAQKLVF TRAV27*01 TRAJ54*01 5.0 356.0 CAGASEgg??gaAQKLVF_ 1 4996 PGT-178 PGT 0.84 1480 PGT-178 66 4930 3 HomoSapiens PGT LLAGIGTVPI Naive T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*02:01 B2M MHCI -14600 chip0516_764303 12.58 7.48 Chip4 healthy_8 healthy _ 6746 4378 EBNA3A-193-201 EBV 0.87 1022 EBNA3A-193-201 62 4316 10 EBV EBNA3A FLRGRAYGL effector memory T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-B*08:01 B2M MHCI -14601 chip0516_626081 11.43 12.79 Chip4 healthy_6 healthy TGCGCCAGCAGCGGGGACGGAATGAACACTGAAGCTTTCTCT CASSGDGMNTEAFS TRBV10-2*01 TRBJ1-1*01 4.0 101.0 _CASSGDGMNTEAFS 2 3073 EBV-LMP2A EBV 0.91 700 NEG 72 3001 11 EBV LMP2A CLGGLLTMV effector T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*02:01 B2M MHCI -14602 chip0516_143451 10.96 8.9 Chip4 healthy_6 healthy _ 6746 5011 EBV-LMP2A EBV 0.95 700 EBV-LMP2A 84 4927 10 EBV LMP2A CLGGLLTMV effector memory T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*02:01 B2M MHCI -14603 chip0516_258982 11.37 9.86 Chip4 healthy_6 healthy TGTGCTGTGGCCCTCTCAAGCAAATCAACCTTT CAVALSSKSTF TRAV8-3*01 TRAJ27*01 6.0 562.0 TGCGCCAGCAGCGGGGACGGAATGAACACTGAAGCTTTCTTT CASSGDGMNTEAFF TRBV10-2*01 TRBJ1-1*01 2.0 133.0 CAVALSSKSTF_CASSGDGMNTEAFF 50 4686 EBV-LMP2A EBV 1.0 700 EBV-LMP2A 80 4606 9 EBV LMP2A CLGGLLTMV effector memory T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*02:01 B2M MHCI -14604 chip0516_879104 10.4 11.42 Chip4 healthy_6 healthy TGTGCTGTGGCCCTCTCAAGCAAATCAACCTTT CAVALSSKSTF TRAV8-3*01 TRAJ27*01 7.0 869.0 TGCGCCAGCAGCGGGGACGGAATGAACACTGAAGCTTTCTTT CASSGDGMNTEAFF TRBV10-2*01 TRBJ1-1*01 1.0 30.0 CAVALSSKSTF_CASSGDGMNTEAFF 50 5050 EBV-LMP2A EBV 1.0 700 EBV-LMP2A 87 4963 9 EBV LMP2A CLGGLLTMV effector memory T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*02:01 B2M MHCI -14605 chip0516_679177 6.11 14.01 Chip4 healthy_6 healthy _ 6746 4786 M1 FLU 0.88 1250 M1 68 4718 7 InfluenzaA M1 GILGFVFTL transitional T cells between effector and memory populations PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*02:01 B2M MHCI -14606 chip0516_843625 -3.54 13.58 Chip4 healthy_8 healthy _ 6746 4873 GAD2-HPR-8 GAD65 0.52 9 GAD2-HPR-8 72 4801 1 HomoSapiens GAD2 HPRYFNQL Naive T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-B*08:01 B2M MHCI -14607 chip0516_605365 11.31 12.5 Chip4 healthy_8 healthy TGTGCCAGCAGTTTAATGGGGACAGGGGGCTTGAGTGAAAAACTGTTTTTT CASSLMGTGGLSEKLFF TRBV28*01 TRBJ1-4*01 18.0 883.0 _CASSLMGTGGLSEKLFF 18 3315 EBNA3A-158-166 EBV 0.83 444 EBNA3A-158-166 83 3232 11 EBV EBNA3A QAKWRLQTL effector T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-B*08:01 B2M MHCI -14608 chip0516_287388 11.21 8.56 Chip4 healthy_6 healthy _ 6746 7836 EBV-LMP2A EBV 1.0 700 EBV-LMP2A 64 7772 10 EBV LMP2A CLGGLLTMV effector memory T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*02:01 B2M MHCI -14609 chip0516_805586 7.99 13.92 Chip4 healthy_7 healthy _ 6746 2488 M1 FLU 0.92 1250 NEG 79 2409 7 InfluenzaA M1 GILGFVFTL transitional T cells between effector and memory populations PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*02:01 B2M MHCI -14610 chip0516_66221 11.73 13.08 Chip4 healthy_6 healthy TGTGCTGTGGCCCTCTCAAGCAAATCAACCTTT CAVALSSKSTF TRAV8-3*01 TRAJ27*01 2.0 323.0 TGCGCCAGCAGCGGGGACGGAATGAACACTGAAGCTTTCTTT CASSGDGMNTEAFF TRBV10-2*01 TRBJ1-1*01 32.0 1791.0 CAVALSSKSTF_CASSGDGMNTEAFF 50 2630 EBV-LMP2A EBV 0.96 700 EBV-LMP2A 71 2559 11 EBV LMP2A CLGGLLTMV effector T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*02:01 B2M MHCI -14611 chip0516_309316 11.79 7.96 Chip4 healthy_6 healthy TGCGCCAGCAGCGGGGACGGAATGAACACTGAAGCTTTCTTT CASSGDGMNTEAFF TRBV10-2*01 TRBJ1-1*01 1.0 93.0 _CASSGDGMNTEAFF 131 5422 EBV-LMP2A EBV 0.97 700 EBV-LMP2A 78 5344 10 EBV LMP2A CLGGLLTMV effector memory T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*02:01 B2M MHCI -14612 chip0516_285688 11.34 9.8 Chip4 healthy_8 healthy TGTGCCGTGAAGACGGACACCAATGCAGGCAAATCAACCTTT CAVKTDTNAGKSTF TRAV12-2*01 TRAJ27*01 15.0 769.0 CAVKTDTNAGKSTF_ 20 5373 EBNA3A-193-201 EBV 0.89 1022 EBNA3A-193-201 75 5298 9 EBV EBNA3A FLRGRAYGL effector memory T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-B*08:01 B2M MHCI -14613 chip0516_550765 5.94 12.85 Chip4 healthy_9 healthy _ 6746 5660 GAD2-MMI-8 GAD65 0.56 40 GAD2-MMI-8 81 5579 7 HomoSapiens GAD2 MMIARFKM transitional T cells between effector and memory populations PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-B*08:01 B2M MHCI -14614 chip0516_306840 11.18 9.74 Chip4 healthy_6 healthy TGTGCTGTTCTAATGGATAGCAACTATCAGTTAATCTGG CAVLMDSNYQLIW TRAV21*01 TRAJ33*01 13.0 782.0 CAVLMDSNYQLIW_ 20 5966 EBV-LMP2A EBV 0.93 700 EBV-LMP2A 85 5881 9 EBV LMP2A CLGGLLTMV effector memory T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*02:01 B2M MHCI -14615 chip0516_317213 5.54 11.94 Chip4 healthy_6 healthy TGTGCCGTGACCGGAGGGGAACGCAGTGGCGGTAGCCGCTCTTTACTGACATTT CAVTGGERSGGSRSLLTF TRAV12-2*01 TRAJ53*01 4.0 71.0 CAVTGGERSGGSRSLLTF_ 1 6251 EBV-LMP1-1 EBV 0.92 237 EBV-LMP1-1 78 6173 7 EBV LMP1 YLLEMLWRL transitional T cells between effector and memory populations PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*02:01 B2M MHCI -14616 chip0516_515681 0.29 8.98 Chip4 healthy_8 healthy TGCAGCGTTGAAGAATGGCAGGGAGGCACCCAGTACTTC CSVEEWQGGTQYF TRBV29-1*01 TRBJ2-5*01 2.0 105.0 _CSVEEWQGGTQYF 2 5741 EBNA3A-158-166 EBV 0.68 444 EBNA3A-158-166 74 5667 4 EBV EBNA3A QAKWRLQTL Naive T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-B*08:01 B2M MHCI -14617 chip0516_201685 -3.87 9.24 Chip4 healthy_7 healthy TGTGCTGCCACTTATAACACCGACAAGCTCATCTTT CAATYNTDKLIF TRAV21*01 TRAJ34*01 10.0 945.0 TGTGCCAGCAGTTTGGGGGGGCTCGCCTACGAGCAGTACTTC CASSLGGLAYEQYF TRBV27*01 TRBJ2-7*01 22.0 1994.0 CAATYNTDKLIF_CASSLGGLAYEQYF 1 5814 MART1-A28L MART1 0.81 84 MART1-A28L 74 5740 2 HomoSapiens MART1 ALGIGILTV Naive T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*02:01 B2M MHCI -14618 chip0516_241616 11.09 7.83 Chip4 healthy_6 healthy TGTGCTGTGGCCCTCTCAAGCAAATCAACCTTT CAVALSSKSTF TRAV8-3*01 TRAJ27*01 1.0 50.0 CAVALSSKSTF_ 58 6415 EBV-LMP2A EBV 0.95 700 EBV-LMP2A 77 6338 10 EBV LMP2A CLGGLLTMV effector memory T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*02:01 B2M MHCI -14619 chip0516_176859 11.14 6.97 Chip4 healthy_6 healthy TGTGCTGTGGCCCTCTCAAGCAAATCAACCTTT CAVALSSKSTF TRAV8-3*01 TRAJ27*01 2.0 153.0 CAVALSSKSTF_ 58 7028 EBV-LMP2A EBV 0.92 700 EBV-LMP2A 84 6944 10 EBV LMP2A CLGGLLTMV effector memory T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*02:01 B2M MHCI -14620 chip0516_18798 9.6 8.88 Chip4 healthy_6 healthy _ 6746 6741 EBV-LMP2A EBV 0.88 700 EBV-LMP2A 81 6660 8 EBV LMP2A CLGGLLTMV effector memory T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*02:01 B2M MHCI -14621 chip0516_136487 -3.62 11.36 Chip4 healthy_9 healthy TGTGCTCTATCTGACACGGGCAGGAGAGCACTTACTTTT CALSDTGRRALTF TRAV9-2*01 TRAJ5*01 2.0 106.0 CALSDTGRRALTF_ 1 4332 G6PC2-NLI-9 IGRP 0.48 7 NEG 70 4262 1 HomoSapiens G6PC2 NLIFKWKSI Naive T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-B*08:01 B2M MHCI -14622 chip0516_62830 -4.33 9.25 Chip4 healthy_7 healthy TGTGCCAGCAGCCAAGTGAGGGGGATAGAGACCCAGTACTTC CASSQVRGIETQYF TRBV14*01 TRBJ2-5*01 10.0 371.0 _CASSQVRGIETQYF 1 5171 PGT-178 PGT 0.81 1480 NEG 85 5086 2 HomoSapiens PGT LLAGIGTVPI Naive T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*02:01 B2M MHCI -14623 chip0516_247203 11.38 12.52 Chip4 healthy_6 healthy _ 6746 2806 EBV-LMP2A EBV 1.0 700 NEG 70 2736 11 EBV LMP2A CLGGLLTMV effector T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*02:01 B2M MHCI -14624 chip0516_23869 -1.59 8.75 Chip4 healthy_9 healthy _ 6746 6527 GFAP-LRL-8 GFAP 0.5 18 GFAP-LRL-8 77 6450 3 HomoSapiens GFAP LRLRLDQL Naive T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-B*08:01 B2M MHCI -14625 chip0516_110768 11.44 8.72 Chip4 healthy_9 healthy TGTGCAGCAAGCGCAAATGCTGGCAACAACCGTAAGCTGATTTGG CAASANAGNNRKLIW TRAV29/DV5*01 TRAJ38*01 2.0 49.0 CAASANAGNNRKLIW_ 1 4141 BZLF1-190-197 EBV 0.65 2156 BZLF1-190-197 73 4068 10 EBV BZLF1 RAKFKQLL effector memory T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-B*08:01 B2M MHCI -14626 chip0516_423799 -3.84 12.65 Chip4 healthy_10 healthy TGTGCTCGAGGGGGGGATAGCAGCTATAAATTGATCTTC CARGGDSSYKLIF TRAV16*01 TRAJ12*01 11.0 1321.0 TGTGCCAGCAGCTTACTAGCTTCTACAGATACGCAGTATTTT CASSLLASTDTQYF TRBV7-2*01 TRBJ2-3*01 2.0 87.0 CARGGDSSYKLIF_CASSLLASTDTQYF 1 3418 GFAP-HLK-8 GFAP 0.68 28 GFAP-HLK-8 82 3336 1 HomoSapiens GFAP HLKRNIVV Naive T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-B*08:01 B2M MHCI -14627 chip0516_204847 11.33 9.15 Chip4 healthy_8 healthy TGTGCCAGCAGCTCCGGACAGGCCTACGAGCAGTACTTC CASSSGQAYEQYF TRBV7-8*01 TRBJ2-7*01 9.0 630.0 _CASSSGQAYEQYF 49 4667 EBNA3A-193-201 EBV 0.83 1022 EBNA3A-193-201 72 4595 10 EBV EBNA3A FLRGRAYGL effector memory T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-B*08:01 B2M MHCI -14628 chip0516_197854 -2.89 14.09 Chip4 healthy_8 healthy TGTGCTGTGAGGGAATACAACTTCAACAAATTCTACTTT CAVREYNFNKFYF TRAV1-2*01 TRAJ21*01 28.0 1923.0 CAVREYNFNKFYF_ 1 3081 G6PC2-LTS-10 IGRP 0.79 59 G6PC2-LTS-10 67 3014 1 HomoSapiens G6PC2 LTSLTILQLY Naive T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*01:01 B2M MHCI -14629 chip0516_204533 5.06 9.55 Chip4 healthy_6 healthy TGTGCTACGGAAGGGGCTTCAGGATACAGCACCCTCACCTTT CATEGASGYSTLTF TRAV17*01 TRAJ11*01 14.0 711.0 CATEGASGYSTLTF_ 8 6536 EBV-LMP2-FLY EBV 0.94 355 EBV-LMP2-FLY 99 6437 6 EBV LMP2 FLYALALLL central memory T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*02:01 B2M MHCI -14630 chip0516_22115 15.12 12.9 Chip4 healthy_6 healthy _ 6746 2089 EBV-BLMF1 EBV 0.81 2531 NEG 72 2017 12 EBV BLMF1 GLCTLVAML effector T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*02:01 B2M MHCI -14631 chip0516_670548 11.86 13.35 Chip4 healthy_8 healthy _ 6746 3313 EBNA3A-193-201 EBV 0.47 1022 EBNA3A-193-201 93 3220 11 EBV EBNA3A FLRGRAYGL effector T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-B*08:01 B2M MHCI -14632 chip0516_440467 -3.09 9.08 Chip4 healthy_8 healthy TGTGCCAGCAGCATGACGTTCTACGAGCAGTACTTC CASSMTFYEQYF TRBV14*01 TRBJ2-7*01 2.0 23.0 _CASSMTFYEQYF 1 5495 NP30-38 FLU 0.79 72 NEG 60 5435 2 InfluenzaA NP RPIIRPATL Naive T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-B*08:01 B2M MHCI -14633 chip0516_822628 11.04 11.22 Chip4 healthy_6 healthy _ 6746 5450 EBV-LMP2A EBV 0.96 700 EBV-LMP2A 75 5375 9 EBV LMP2A CLGGLLTMV effector memory T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*02:01 B2M MHCI -14634 chip0516_311963 -3.03 8.09 Chip4 healthy_6 healthy TGTGCTGTGAGAGACATGCCTGATAGCAACTATCAGTTAATCTGG CAVRDMPDSNYQLIW TRAV3*01 TRAJ33*01 37.0 1963.0 TGTGCCAGCAGCCCAGGTCACCTAGCGGGGATTTACGAGCAGTACTCG CASSPGHLAGIYEQYS TRBV3-1*01 TRBJ2-7*01 43.0 3394.0 CAVRDMPDSNYQLIW_CASSPGHLAGIYEQYS 1 7168 PGT-178 PGT 0.71 1480 PGT-178 63 7105 2 HomoSapiens PGT LLAGIGTVPI Naive T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*02:01 B2M MHCI -14635 chip0516_345151 12.73 8.52 Chip4 healthy_6 healthy _ 6746 3788 EBV-LMP2A EBV 1.0 700 EBV-LMP2A 79 3709 10 EBV LMP2A CLGGLLTMV effector memory T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*02:01 B2M MHCI -14636 chip0516_222276 11.15 8.14 Chip4 healthy_8 healthy TGTGCCAGCAGCTTAGGACAGGCCTACGAGCAGTACTTC CASSLGQAYEQYF TRBV7-8*01 TRBJ2-7*01 5.0 524.0 _CASSLGQAYEQYF 175 6208 EBNA3A-193-201 EBV 0.85 1022 EBNA3A-193-201 67 6141 10 EBV EBNA3A FLRGRAYGL effector memory T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-B*08:01 B2M MHCI -14637 chip0516_737801 12.34 6.98 Chip4 healthy_6 healthy TGTGCTACGGAAGGGGACTCAGGATACAGCACCCTCACCTTT CATEGDSGYSTLTF TRAV17*01 TRAJ11*01 1.0 37.0 TGTGCCAGCAGTCAACAGGGGGGTAACTATGGCTACACCTTC CASSQQGGNYGYTF TRBV6-1*01 TRBJ1-2*01 14.0 648.0 CATEGDSGYSTLTF_CASSQQGGNYGYTF 1 5313 EBV-LMP2-FLY EBV 0.96 355 EBV-LMP2-FLY 61 5252 10 EBV LMP2 FLYALALLL effector memory T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*02:01 B2M MHCI -14638 chip0516_728765 12.57 8.76 Chip4 healthy_6 healthy TGTGCTGTGGCCCTCTCAAGCAAATCAACCTTT CAVALSSKSTF TRAV8-3*01 TRAJ27*01 6.0 480.0 CAVALSSKSTF_ 58 4154 EBV-LMP2A EBV 0.83 700 NEG 92 4062 10 EBV LMP2A CLGGLLTMV effector memory T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*02:01 B2M MHCI -14639 chip0516_496764 5.32 9.65 Chip4 healthy_6 healthy _ 6746 6076 EBV-LMP2-FLY EBV 0.85 355 NEG 82 5994 6 EBV LMP2 FLYALALLL central memory T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*02:01 B2M MHCI -14640 chip0516_419033 14.52 9.05 Chip4 healthy_6 healthy TATGCAGAGAACCATGCACTCCACTTC YAENHALHF TRAV5*01,TRAV23/DV6*01 TRAJ41*01 2.0 44.0 YAENHALHF_ 1 4170 EBV-BLMF1 EBV 0.85 2531 EBV-BLMF1 91 4079 12 EBV BLMF1 GLCTLVAML effector T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*02:01 B2M MHCI -14641 chip0516_238575 -2.91 11.68 Chip4 healthy_9 healthy _ 6746 3635 INS-MAL-8 INS 0.67 38 NEG 63 3572 4 HomoSapiens INS MALWMRLL Naive T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-B*08:01 B2M MHCI -14642 chip0516_152042 13.29 13.61 Chip4 healthy_6 healthy TGTGCTCGGAGGAAGGGCCCGGCATGCCAGAATAATGTTT CARRKGcc??ggHARIMF TRAV19*01 TRAJ31*01 13.0 1268.0 CARRKGcc??ggHARIMF_ 1 2278 EBV-BRLF1 EBV 1.0 1264 NEG 80 2198 11 EBV BRLF1 YVLDHLIVV effector T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*02:01 B2M MHCI -14643 chip0516_294448 0.44 8.9 Chip4 healthy_6 healthy TGTGCAGGAGCCACCGTGGAAGACTACAAGCTCAGCTTT CAGATVEDYKLSF TRAV27*01 TRAJ20*01 26.0 2050.0 TGTGCCAGCAGCTTAGGGACAGGGGGCTATATCGACGAGCAGTACTTC CASSLGTGGYIDEQYF TRBV11-2*01 TRBJ2-7*01 28.0 1384.0 CAGATVEDYKLSF_CASSLGTGGYIDEQYF 1 5322 ZNT8-173-181 ZNT8 0.82 27 NEG 72 5250 4 HomoSapiens ZNT8 IQATVMIIV Naive T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*02:01 B2M MHCI -14644 chip0516_196141 5.29 11.12 Chip4 healthy_6 healthy TGTGCCAGCAGCTCCATCTTAGGAGGGAGTTCTCCCTACGAGCAGTACTTC CASSSILGGSSPYEQYF TRBV13*01 TRBJ2-7*01 33.0 1975.0 _CASSSILGGSSPYEQYF 1 6554 EBV-LMP1-1 EBV 1.0 237 EBV-LMP1-1 62 6492 6 EBV LMP1 YLLEMLWRL central memory T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*02:01 B2M MHCI -14645 chip0516_852712 6.6 14.59 Chip4 healthy_8 healthy _ 6746 5389 G6PC2-TLH-9 IGRP 0.5 3 NEG 79 5310 7 HomoSapiens G6PC2 TLHRLTWSF transitional T cells between effector and memory populations PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-B*08:01 B2M MHCI -14646 chip0516_525462 6.77 12.51 Chip4 healthy_6 healthy TGTGCAATGAGCGCGGCTGGAGCCAATAGTAAGCTGACATTT CAMSAAGANSKLTF TRAV12-3*01 TRAJ56*01 1.0 103.0 TGTGCCAGCAGCTTAGGGGCAGGGACCGGGGAGACCCAGTACTTC CASSLGAGTGETQYF TRBV7-9*01 TRBJ2-5*01 1.0 10.0 CAMSAAGANSKLTF_CASSLGAGTGETQYF 1 4796 ZNT8-115-123 ZNT8 0.94 74 ZNT8-115-123 87 4709 7 HomoSapiens ZNT8 LLSLFSLWL transitional T cells between effector and memory populations PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*02:01 B2M MHCI -14647 chip0516_205040 12.08 8.73 Chip4 healthy_8 healthy _ 6746 5247 EBNA3A-193-201 EBV 0.78 1022 EBNA3A-193-201 92 5155 10 EBV EBNA3A FLRGRAYGL effector memory T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-B*08:01 B2M MHCI -14648 chip0516_849282 -1.09 8.89 Chip4 healthy_7 healthy TGTGCCTGGGGCCGCGCCCCCGGGGAGCTGTTTTTT CAWGRAPGELFF TRBV30*01 TRBJ2-2*01 7.0 359.0 _CAWGRAPGELFF 1 5944 ROTA-VP3 ROTA 0.8 41 NEG 78 5866 3 RotavirusA VP3 YLLPGWKL Naive T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*02:01 B2M MHCI -14649 chip0516_316612 10.83 10.21 Chip4 healthy_6 healthy _ 6746 5150 EBV-LMP2A EBV 0.95 700 EBV-LMP2A 81 5069 9 EBV LMP2A CLGGLLTMV effector memory T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*02:01 B2M MHCI -14650 chip0516_308716 5.05 10.86 Chip4 healthy_8 healthy TGTGCCAGCAGCTTAGGACAGGCCTACGAGCAGTACTTC CASSLGQAYEQYF TRBV7-8*01 TRBJ2-7*01 4.0 204.0 _CASSLGQAYEQYF 175 4049 EBNA3A-193-201 EBV 0.84 1022 EBNA3A-193-201 68 3981 6 EBV EBNA3A FLRGRAYGL central memory T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-B*08:01 B2M MHCI -14651 chip0516_491206 -2.65 13.82 Chip4 healthy_9 healthy _ 6746 3214 BZLF1-190-197 EBV 0.73 2156 NEG 71 3143 1 EBV BZLF1 RAKFKQLL Naive T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-B*08:01 B2M MHCI -14652 chip0516_249367 -4.93 9.25 Chip4 healthy_7 healthy _ 6746 5138 ZNT8-145-153 ZNT8 1.0 14 ZNT8-145-153 92 5046 2 HomoSapiens ZNT8 LLSILCIWV Naive T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*02:01 B2M MHCI -14653 chip0516_2955 -2.85 9.18 Chip4 healthy_9 healthy TGTGCTCTGAGCGGGACGAACACCGGTAACCAGTTCTATTTT CALSGTNTGNQFYF TRAV19*01 TRAJ49*01 18.0 1299.0 CALSGTNTGNQFYF_ 1 5033 ZNT8-YAY-8 ZNT8 0.57 54 ZNT8-YAY-8 71 4962 2 HomoSapiens ZNT8 YAYAKWKL Naive T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-B*08:01 B2M MHCI -14654 chip0516_740623 5.71 9.28 Chip4 healthy_8 healthy TGCATCCTGCCCCTTGCTGGTGGTACTAGCTATGGAAAGCTGACATTT CILPLAGGTSYGKLTF TRAV26-2*01 TRAJ52*01 1.0 103.0 TGTGCCAGCAGCTTAGGACAGGCCTACGAGCAGTACTTC CASSLGQAYEQYF TRBV7-8*01 TRBJ2-7*01 25.0 1512.0 CILPLAGGTSYGKLTF_CASSLGQAYEQYF 308 6799 EBNA3A-193-201 EBV 0.88 1022 EBNA3A-193-201 79 6720 6 EBV EBNA3A FLRGRAYGL central memory T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-B*08:01 B2M MHCI -14655 chip0516_399121 11.5 8.8 Chip4 healthy_8 healthy TGCATCCTGCCCCTTGCTGGTGGTACTAGCTATGGAAAGCTGACATTT CILPLAGGTSYGKLTF TRAV26-2*01 TRAJ52*01 14.0 642.0 TGTGCCAGCAGCTTAGGACAGGCCTACGAGCAGTACTTC CASSLGQAYEQYF TRBV7-8*01 TRBJ2-7*01 15.0 758.0 CILPLAGGTSYGKLTF_CASSLGQAYEQYF 308 4779 EBNA3A-193-201 EBV 0.85 1022 EBNA3A-193-201 95 4684 10 EBV EBNA3A FLRGRAYGL effector memory T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-B*08:01 B2M MHCI -14656 chip0516_642775 12.83 8.57 Chip4 healthy_8 healthy _ 6746 2731 EBNA3A-193-201 EBV 0.79 1022 EBNA3A-193-201 90 2641 10 EBV EBNA3A FLRGRAYGL effector memory T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-B*08:01 B2M MHCI -14657 chip0516_324134 -4.19 8.83 Chip4 healthy_8 healthy TGTGCAATAAAGGAGGCAGGAAACACACCTCTTGTCTTT CAIKEAGNTPLVF TRAV12-3*01 TRAJ29*01 2.0 241.0 TGTGCCAGCAGTCCCGAGCGGGGGACCTACAATGAGCAGTTCTTC CASSPERGTYNEQFF TRBV12-3*01,TRBV12-4*01 TRBJ2-1*01 16.0 1077.0 CAIKEAGNTPLVF_CASSPERGTYNEQFF 1 6082 ZNT8-YAY-8 ZNT8 0.98 54 ZNT8-YAY-8 75 6007 2 HomoSapiens ZNT8 YAYAKWKL Naive T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-B*08:01 B2M MHCI -14658 chip0516_424833 12.03 9.14 Chip4 healthy_6 healthy TGTGCTGTGGCCCTCTCAAGCAAATCAACCTTT CAVALSSKSTF TRAV8-3*01 TRAJ27*01 3.0 164.0 TGCGCCAGCAGCGGGGACGGAATGAACACTGAAGCTTTCTTT CASSGDGMNTEAFF TRBV10-2*01 TRBJ1-1*01 8.0 263.0 CAVALSSKSTF_CASSGDGMNTEAFF 50 4615 EBV-LMP2A EBV 1.0 700 EBV-LMP2A 82 4533 10 EBV LMP2A CLGGLLTMV effector memory T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*02:01 B2M MHCI -14659 chip0516_34328 10.62 9.1 Chip4 healthy_6 healthy TGCGCCAGCAGCGGGGACGGAATGAACACTGAAGCTTTCTTT CASSGDGMNTEAFF TRBV10-2*01 TRBJ1-1*01 18.0 1058.0 _CASSGDGMNTEAFF 131 7267 EBV-LMP2A EBV 0.91 700 EBV-LMP2A 81 7186 10 EBV LMP2A CLGGLLTMV effector memory T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*02:01 B2M MHCI -14660 chip0516_300964 10.51 10.55 Chip4 healthy_6 healthy TGCGCCAGCAGCGGGGACGGAATGAACACTGAAGCTTTCTTT CASSGDGMNTEAFF TRBV10-2*01 TRBJ1-1*01 10.0 293.0 _CASSGDGMNTEAFF 131 4957 EBV-LMP2A EBV 0.98 700 EBV-LMP2A 67 4890 9 EBV LMP2A CLGGLLTMV effector memory T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*02:01 B2M MHCI -14661 chip0516_294729 12.44 13.2 Chip4 healthy_7 healthy TGCGCCAGCAGTCATGGGAACTATGGCTATACCTTC CASSHGNYGYTF TRBV5-1*01 TRBJ1-2*01 4.0 187.0 _CASSHGNYGYTF 15 1813 PGT-178 PGT 0.44 1480 NEG 63 1750 11 HomoSapiens PGT LLAGIGTVPI effector T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*02:01 B2M MHCI -14662 chip0516_459645 8.31 13.89 Chip4 healthy_6 healthy _ 6746 3347 M1 FLU 0.97 1250 M1 67 3280 11 InfluenzaA M1 GILGFVFTL effector T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*02:01 B2M MHCI -14663 chip0516_693423 11.59 8.17 Chip4 healthy_6 healthy TGCGCCAGCAGCGGGGTCGGAAGGACCACTGACGCGTTCTTT CASSGVGRTTDAFF TRBV10-2*01 TRBJ1-1*01 4.0 434.0 _CASSGVGRTTDAFF 1 8885 EBV-LMP2A EBV 0.98 700 EBV-LMP2A 73 8812 10 EBV LMP2A CLGGLLTMV effector memory T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*02:01 B2M MHCI -14664 chip0516_227665 -1.55 9.36 Chip4 healthy_7 healthy TGTGCCAGCAGTTCGACAGGGAACACCATATATTTT CASSSTGNTIYF TRBV28*01 TRBJ1-3*01 11.0 630.0 _CASSSTGNTIYF 1 5968 ZNT8-153-161 ZNT8 0.86 41 NEG 82 5886 3 HomoSapiens ZNT8 VVTGVLVYL Naive T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*02:01 B2M MHCI -14665 chip0516_340567 11.39 12.06 Chip4 healthy_8 healthy TGTGCCAGCAGCTCCGGACAGGCCTACGAGCAGTACTTC CASSSGQAYEQYF TRBV7-8*01 TRBJ2-7*01 22.0 1143.0 _CASSSGQAYEQYF 49 4922 EBNA3A-193-201 EBV 0.89 1022 EBNA3A-193-201 89 4833 9 EBV EBNA3A FLRGRAYGL effector memory T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-B*08:01 B2M MHCI -14666 chip0516_245578 -4.19 8.59 Chip4 healthy_7 healthy TGTGCTGTGGCGATTAACACCAATGCAGGCAAATCAACCTTT CAVAINTNAGKSTF TRAV8-3*01 TRAJ27*01 1.0 14.0 CAVAINTNAGKSTF_ 1 4967 ZNT8-115-123 ZNT8 0.57 74 NEG 70 4897 2 HomoSapiens ZNT8 LLSLFSLWL Naive T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*02:01 B2M MHCI -14667 chip0516_883311 6.87 12.97 Chip4 healthy_9 healthy _ 6746 3986 NP44-52 FLU 0.81 474 NP44-52 68 3918 7 InfluenzaA NP CTELKLSDY transitional T cells between effector and memory populations PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*01:01 B2M MHCI -14668 chip0516_679810 11.03 8.75 Chip4 healthy_8 healthy TGTGCCAGCAGCTTAGGACAGGCCTACGAGCAGTACTTC CASSLGQAYEQYF TRBV7-8*01 TRBJ2-7*01 12.0 594.0 _CASSLGQAYEQYF 175 7712 EBNA3A-193-201 EBV 0.81 1022 EBNA3A-193-201 76 7636 10 EBV EBNA3A FLRGRAYGL effector memory T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-B*08:01 B2M MHCI -14669 chip0516_100773 11.07 11.79 Chip4 healthy_6 healthy _ 6746 4846 EBV-LMP2A EBV 0.97 700 EBV-LMP2A 65 4781 9 EBV LMP2A CLGGLLTMV effector memory T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*02:01 B2M MHCI -14670 chip0516_267228 -3.71 9.09 Chip4 healthy_9 healthy TGTGTGGTGAACCCGCTTCTAGGTTCTGCAAGGCAACTGACCTT CVVNPLLg?gFCKATDL TRAV12-1*01 TRAJ22*01 5.0 348.0 TGTGCCAGCACTACGACTAGCGGGGGGGCTTGGACCGGGGAGCTGTTTTTT CASTTTSGGAWTGELFF TRBV2*01 TRBJ2-2*01 31.0 1951.0 CVVNPLLg?gFCKATDL_CASTTTSGGAWTGELFF 1 4554 EBNA3A-158-166 EBV 0.64 444 EBNA3A-158-166 76 4478 2 EBV EBNA3A QAKWRLQTL Naive T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-B*08:01 B2M MHCI -14671 chip0516_161664 -4.35 8.48 Chip4 healthy_9 healthy _ 6746 5286 NP140-148 FLU 0.59 102 NP140-148 61 5225 2 InfluenzaA NP HSNLNDATY Naive T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*01:01 B2M MHCI -14672 chip0516_269875 -3.74 9.49 Chip4 healthy_8 healthy TGTGCAATGAACGTTGCGGATAGCAACTATAAATTGATCTTC CAMNVADSNYKLIF TRAV14/DV4*01 TRAJ12*01 39.0 2191.0 TGTGCCAGCAGCTTAGCCCAGTCCTCTCTATGGCTACACCTTC CASSLAQ??tPLYGYTF TRBV7-6*01 TRBJ1-2*01 5.0 138.0 CAMNVADSNYKLIF_CASSLAQ??tPLYGYTF 1 6075 ZNT8-VTD-9 ZNT8 0.71 65 ZNT8-VTD-9 76 5999 2 HomoSapiens ZNT8 VTDAAHLLI Naive T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*01:01 B2M MHCI -14673 chip0516_153668 10.44 10.62 Chip4 healthy_8 healthy TGTGCTGTGACCCTTACCCTCTACTCTGGGGCTGGGAGTTACCAACTCACTTTC CAVTLTLYSGAGSYQLTF TRAV21*01 TRAJ28*01 9.0 798.0 TGTGCCAGCAGTTTAATGGGGACAGGGGGCTTGAGTGAAAAACTGTTTTTT CASSLMGTGGLSEKLFF TRBV28*01 TRBJ1-4*01 32.0 924.0 CAVTLTLYSGAGSYQLTF_CASSLMGTGGLSEKLFF 19 4094 EBNA3A-158-166 EBV 0.87 444 NEG 78 4016 9 EBV EBNA3A QAKWRLQTL effector memory T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-B*08:01 B2M MHCI -14674 chip0516_769547 5.58 9.7 Chip4 healthy_9 healthy TGTGCCAGCTTCGCTCGGGGGCTCGGGGGAATCAGCCCCAGCAATTT CASFARGct?RGNQPQQF TRBV7-2*01 TRBJ1-5*01 5.0 226.0 _CASFARGct?RGNQPQQF 1 7729 EBNA3A-158-166 EBV 0.72 444 EBNA3A-158-166 81 7648 6 EBV EBNA3A QAKWRLQTL central memory T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-B*08:01 B2M MHCI -14675 chip0516_875743 11.11 12.01 Chip4 healthy_6 healthy TGCGCCAGCAGCGGGGACGGAATGAACACTGAAGCTTTCTTT CASSGDGMNTEAFF TRBV10-2*01 TRBJ1-1*01 1.0 26.0 _CASSGDGMNTEAFF 131 3844 EBV-LMP2A EBV 0.88 700 NEG 71 3773 9 EBV LMP2A CLGGLLTMV effector memory T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*02:01 B2M MHCI -14676 chip0516_160473 -2.58 13.88 Chip4 healthy_9 healthy _ 6746 2975 BZLF1-190-197 EBV 0.45 2156 BZLF1-190-197 77 2898 1 EBV BZLF1 RAKFKQLL Naive T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-B*08:01 B2M MHCI -14677 chip0516_14470 15.21 11.93 Chip4 healthy_9 healthy _ 6746 3393 BZLF1-190-197 EBV 0.86 2156 BZLF1-190-197 63 3330 12 EBV BZLF1 RAKFKQLL effector T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-B*08:01 B2M MHCI -14678 chip0516_708051 -2.95 13.18 Chip4 healthy_8 healthy TGTGCAGCAAGACCCAGAGGCCAGAAGCTGCTCTTT CAARPRGQKLLF TRAV13-1*01 TRAJ16*01 10.0 693.0 TGCGCCAGCAGCCAATCCCCGGGGCGCGAGGACACTGAAGCTTTCTTT CASSQSPGREDTEAFF TRBV4-1*01 TRBJ1-1*01 18.0 1212.0 CAARPRGQKLLF_CASSQSPGREDTEAFF 1 4520 LMP2A-CPL EBV 0.79 44 LMP2A-CPL 75 4445 1 EBV LMP2A CPLSKILL Naive T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-B*08:01 B2M MHCI -14679 chip0516_115923 11.2 7.8 Chip4 healthy_6 healthy TGTGCTGTGGCCCTCTCAAGCAAATCAACCTTT CAVALSSKSTF TRAV8-3*01 TRAJ27*01 15.0 1233.0 CAVALSSKSTF_ 58 5358 EBV-LMP2A EBV 0.94 700 EBV-LMP2A 62 5296 10 EBV LMP2A CLGGLLTMV effector memory T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*02:01 B2M MHCI -14680 chip0516_259850 11.74 13.06 Chip4 healthy_6 healthy _ 6746 2753 EBV-LMP2A EBV 1.0 700 NEG 77 2676 11 EBV LMP2A CLGGLLTMV effector T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*02:01 B2M MHCI -14681 chip0516_628936 5.06 9.69 Chip4 healthy_8 healthy _ 6746 5503 EBNA3A-193-201 EBV 0.81 1022 EBNA3A-193-201 68 5435 6 EBV EBNA3A FLRGRAYGL central memory T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-B*08:01 B2M MHCI -14682 chip0516_436009 -1.13 10.08 Chip4 healthy_7 healthy TGTGCCTCCAGACAACTCGAGCCACAAGCTTTCTTT CASRQLEPQAFF TRBV30*01 TRBJ1-1*01 12.0 574.0 _CASRQLEPQAFF 1 6761 ROTA-VP3 ROTA 0.63 41 ROTA-VP3 82 6679 3 RotavirusA VP3 YLLPGWKL Naive T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*02:01 B2M MHCI -14683 chip0516_621629 5.5 9.71 Chip4 healthy_7 healthy _ 6746 4422 EBV-LMP2-FLY EBV 0.92 355 NEG 65 4357 6 EBV LMP2 FLYALALLL central memory T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*02:01 B2M MHCI -14684 chip0516_380056 11.54 13.39 Chip4 healthy_8 healthy TGCATCCTGCCCCTTGCTGGTGGTACTAGCTATGGAAAGCTGACATTT CILPLAGGTSYGKLTF TRAV26-2*01 TRAJ52*01 50.0 3052.0 CILPLAGGTSYGKLTF_ 55 2578 EBNA3A-193-201 EBV 0.86 1022 EBNA3A-193-201 61 2517 11 EBV EBNA3A FLRGRAYGL effector T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-B*08:01 B2M MHCI -14685 chip0516_404125 12.48 7.99 Chip4 healthy_8 healthy TGCATCCTGCCCCTTGCTGGTGGTACTCGCTCTGGACAGCTGCCATTT CILPLAGGTRSGQLPF TRAV26-2*01 TRAJ52*01 5.0 264.0 TGTGCCAGCAGCTTAGGACAGGCCTACGAGCAGTACTTC CASSLGQAYEQYF TRBV7-8*01 TRBJ2-7*01 12.0 647.0 CILPLAGGTRSGQLPF_CASSLGQAYEQYF 1 4434 EBNA3A-193-201 EBV 0.86 1022 EBNA3A-193-201 94 4340 10 EBV EBNA3A FLRGRAYGL effector memory T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-B*08:01 B2M MHCI -14686 chip0516_510229 11.51 7.48 Chip4 healthy_8 healthy TGTGCCAGCAGCTTAGGACAGGCCTACGAGCAGTACTTC CASSLGQAYEQYF TRBV7-8*01 TRBJ2-7*01 12.0 850.0 _CASSLGQAYEQYF 175 4731 EBNA3A-193-201 EBV 0.75 1022 EBNA3A-193-201 70 4661 10 EBV EBNA3A FLRGRAYGL effector memory T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-B*08:01 B2M MHCI -14687 chip0516_109369 5.2 10.04 Chip4 healthy_6 healthy TGTGCTACGGAAGGGGATTCAGGATACAGCACCCTCACCTTT CATEGDSGYSTLTF TRAV17*01 TRAJ11*01 3.0 258.0 CATEGDSGYSTLTF_ 12 4106 EBV-LMP2-FLY EBV 0.91 355 EBV-LMP2-FLY 63 4043 6 EBV LMP2 FLYALALLL central memory T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*02:01 B2M MHCI -14688 chip0516_492595 10.3 13.63 Chip4 healthy_6 healthy TGTGCTACGGAAGGTGATTCAGGATACAGCACCCTCACCTTT CATEGDSGYSTLTF TRAV17*01 TRAJ11*01 35.0 1664.0 CATEGDSGYSTLTF_ 12 3757 EBV-LMP2-FLY EBV 0.92 355 NEG 60 3697 11 EBV LMP2 FLYALALLL effector T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*02:01 B2M MHCI -14689 chip0516_132608 12.22 7.66 Chip4 healthy_6 healthy TGCGCCAGCAGCGGGGCCGGAATGAACACTGAAGCTTTCTTT CASSGAGMNTEAFF TRBV10-2*01 TRBJ1-1*01 12.0 826.0 _CASSGAGMNTEAFF 2 4380 EBV-LMP2A EBV 0.96 700 EBV-LMP2A 66 4314 10 EBV LMP2A CLGGLLTMV effector memory T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*02:01 B2M MHCI -14690 chip0516_549849 9.0 13.74 Chip4 healthy_8 healthy _ 6746 3040 GAD2-STA-10 GAD65 0.66 7 GAD2-STA-10 69 2971 11 HomoSapiens GAD2 STANTNMFTY effector T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*01:01 B2M MHCI -14691 chip0516_560508 -2.95 10.2 Chip4 healthy_9 healthy _ 6746 4582 ZNT8-YAY-8 ZNT8 0.68 54 ZNT8-YAY-8 56 4526 3 HomoSapiens ZNT8 YAYAKWKL Naive T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-B*08:01 B2M MHCI -14692 chip0516_860182 -0.73 8.88 Chip4 healthy_7 healthy TGTGCCAGCAGCTCGATGGGCGAAACTAAGCGGTACTTC CASSSMGETKRYF TRBV7-2*01 TRBJ2-7*01 19.0 899.0 _CASSSMGETKRYF 1 7265 PGT-178 PGT 0.75 1480 PGT-178 53 7212 4 HomoSapiens PGT LLAGIGTVPI Naive T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*02:01 B2M MHCI -14693 chip0516_260068 -1.99 12.54 Chip4 healthy_7 healthy TGTGCCGCCCTCAACCAGGCAGGAACTGCTCTGATCTTT CAALNQAGTALIF TRAV12-2*01 TRAJ15*01 55.0 4062.0 TGTGCCAGCAGTGAAGTTGCCACAACAGATACGCAGTATTTT CASSEVATTDTQYF TRBV25-1*01 TRBJ2-3*01 62.0 3689.0 CAALNQAGTALIF_CASSEVATTDTQYF 1 5166 ZNT8-314-322 ZNT8 0.77 16 NEG 77 5089 4 HomoSapiens ZNT8 ILSAHVATA Naive T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*02:01 B2M MHCI -14694 chip0516_160921 12.2 7.74 Chip4 healthy_8 healthy _ 6746 3834 EBNA3A-193-201 EBV 0.81 1022 EBNA3A-193-201 70 3764 10 EBV EBNA3A FLRGRAYGL effector memory T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-B*08:01 B2M MHCI -14695 chip0516_592296 11.85 8.24 Chip4 healthy_6 healthy TGTGCCAGTAGGGGACTAGTGGGGAGCGCCGGGGAGCTGTTTTTT CASRGLVGSAGELFF TRBV19*01 TRBJ2-2*01 1.0 38.0 _CASRGLVGSAGELFF 5 4347 EBV-BRLF1 EBV 0.83 1264 NEG 92 4255 10 EBV BRLF1 YVLDHLIVV effector memory T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*02:01 B2M MHCI -14696 chip0516_490928 -0.89 9.8 Chip4 healthy_6 healthy _ 6746 5745 POL-132-140 HIV 0.91 37 NEG 70 5675 3 HIV-1 POL LVGPTPVNI Naive T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*02:01 B2M MHCI -14697 chip0516_452649 10.9 11.71 Chip4 healthy_6 healthy _ 6746 4537 EBV-LMP2A EBV 1.0 700 EBV-LMP2A 77 4460 9 EBV LMP2A CLGGLLTMV effector memory T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*02:01 B2M MHCI -14698 chip0516_835016 12.38 8.91 Chip4 healthy_8 healthy TGTGCCAGCAGCTTAGGACAGGCCTACGAGCAGTACTTC CASSLGQAYEQYF TRBV7-8*01 TRBJ2-7*01 15.0 1133.0 _CASSLGQAYEQYF 175 3536 EBNA3A-193-201 EBV 1.0 1022 EBNA3A-193-201 58 3478 10 EBV EBNA3A FLRGRAYGL effector memory T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-B*08:01 B2M MHCI -14699 chip0516_673929 12.38 8.73 Chip4 healthy_6 healthy TGTGCTGTTCTAATGAATAGCAACTATCAGTTAATCTGG CAVLMNSNYQLIW TRAV12-3*01 TRAJ33*01 1.0 18.0 CAVLMNSNYQLIW_ 1 4053 EBV-LMP2A EBV 1.0 700 EBV-LMP2A 60 3993 10 EBV LMP2A CLGGLLTMV effector memory T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*02:01 B2M MHCI -14700 chip0516_795246 9.52 9.23 Chip4 healthy_6 healthy _ 6746 7177 EBV-LMP2A EBV 0.92 700 EBV-LMP2A 86 7091 8 EBV LMP2A CLGGLLTMV effector memory T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*02:01 B2M MHCI -14701 chip0516_759122 11.22 12.9 Chip4 healthy_8 healthy TGTGCCAGCGGGCAGTTCTATTACAATGAGCAGTTCTTC CASGQFYYNEQFF TRBV6-1*01 TRBJ2-1*01 1.0 19.0 _CASGQFYYNEQFF 1 3205 BZLF1-190-197 EBV 0.79 2156 BZLF1-190-197 62 3143 11 EBV BZLF1 RAKFKQLL effector T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-B*08:01 B2M MHCI -14702 chip0516_523965 -3.41 12.26 Chip4 healthy_6 healthy _ 6746 4505 PGT-178 PGT 0.91 1480 PGT-178 48 4457 1 HomoSapiens PGT LLAGIGTVPI Naive T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*02:01 B2M MHCI -14703 chip0516_384959 -3.73 10.17 Chip4 healthy_8 healthy TGTGCCGCGTTCAAGCCGGGAGGAGGAAACAAACTCACCTTT CAAFKPGGGNKLTF TRAV12-2*01 TRAJ10*01 63.0 3975.0 CAAFKPGGGNKLTF_ 1 4977 GAD2-MMI-8 GAD65 0.67 40 NEG 66 4911 2 HomoSapiens GAD2 MMIARFKM Naive T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-B*08:01 B2M MHCI -14704 chip0516_3605 -3.42 11.05 Chip4 healthy_6 healthy TGTGTTGTGAGTGAAAGGGACACGGGCAGGAGAGCACTTACTTTT CVVSERDTGRRALTF TRAV8-2*01 TRAJ5*01 26.0 871.0 CVVSERDTGRRALTF_ 1 6340 GP160-311-320 HIV 0.86 109 NEG 85 6255 1 HIV-1 GP160 RGPGRAFVTI Naive T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*02:01 B2M MHCI -14705 chip0516_30144 -3.27 11.4 Chip4 healthy_9 healthy TGTGCTCTGAGTGAGGCATACTCTGGGGCTGGGAGTTACCAACTCACTTTC CALSEAYSGAGSYQLTF TRAV19*01 TRAJ28*01 1.0 50.0 CALSEAYSGAGSYQLTF_ 1 4631 EBNA3A-158-166 EBV 0.67 444 NEG 72 4559 1 EBV EBNA3A QAKWRLQTL Naive T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-B*08:01 B2M MHCI -14706 chip0516_629051 12.42 13.39 Chip4 healthy_8 healthy TGCATCCTGCCCCTTGCTGGTGGTACTAGCTATGGAAAGCTGACATTT CILPLAGGTSYGKLTF TRAV26-2*01 TRAJ52*01 2.0 61.0 TGTGCCAGCAGCTTAGGACAGGCCTACGAGCAGTACTTC CASSLGQAYEQYF TRBV7-8*01 TRBJ2-7*01 13.0 592.0 CILPLAGGTSYGKLTF_CASSLGQAYEQYF 308 2766 EBNA3A-193-201 EBV 0.58 1022 EBNA3A-193-201 75 2691 11 EBV EBNA3A FLRGRAYGL effector T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-B*08:01 B2M MHCI -14707 chip0516_296068 15.49 12.62 Chip4 healthy_6 healthy TGCAGTGCGCCATGTCCCCCCCACAATGAGCAGTTCTTC CSAPCPPHNEQFF TRBV20-1*01 TRBJ2-1*01 23.0 2031.0 _CSAPCPPHNEQFF 1 2043 EBV-BRLF1 EBV 0.97 1264 EBV-BRLF1 62 1981 12 EBV BRLF1 YVLDHLIVV effector T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*02:01 B2M MHCI -14708 chip0516_274946 11.15 7.57 Chip4 healthy_7 healthy _ 6746 5723 EBV-LMP2-FLY EBV 1.0 355 NEG 77 5646 6 EBV LMP2 FLYALALLL central memory T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*02:01 B2M MHCI -14709 chip0516_430287 11.27 10.21 Chip4 healthy_6 healthy _ 6746 5771 EBV-LMP2A EBV 0.96 700 EBV-LMP2A 74 5697 9 EBV LMP2A CLGGLLTMV effector memory T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*02:01 B2M MHCI -14710 chip0516_787828 11.7 11.99 Chip4 healthy_6 healthy TGTGCTGTTCTAATGGATAGCAACTATCAGTTAATCTGG CAVLMDSNYQLIW TRAV12-3*01 TRAJ33*01 7.0 377.0 CAVLMDSNYQLIW_ 20 4087 EBV-LMP2A EBV 0.97 700 EBV-LMP2A 63 4024 11 EBV LMP2A CLGGLLTMV effector T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*02:01 B2M MHCI -14711 chip0516_631848 -4.54 9.4 Chip4 healthy_7 healthy _ 6746 4991 PGT-178 PGT 0.56 1480 NEG 63 4928 2 HomoSapiens PGT LLAGIGTVPI Naive T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*02:01 B2M MHCI -14712 chip0516_78243 11.78 13.41 Chip4 healthy_6 healthy TGCGCCAGCAGCGGGGACGGAATGAACACTGAAGCTTTCTTT CASSGDGMNTEAFF TRBV10-2*01 TRBJ1-1*01 19.0 1198.0 _CASSGDGMNTEAFF 131 3186 EBV-LMP2A EBV 1.0 700 EBV-LMP2A 69 3117 11 EBV LMP2A CLGGLLTMV effector T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*02:01 B2M MHCI -14713 chip0516_15248 0.61 8.07 Chip4 healthy_6 healthy _ 6746 10745 PGT-178 PGT 0.55 1480 PGT-178 73 10672 4 HomoSapiens PGT LLAGIGTVPI Naive T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*02:01 B2M MHCI -14714 chip0516_451906 -3.98 11.83 Chip4 healthy_7 healthy TGTGCCCGAAGTACCGAGCTAGCGGGAGTTTCCTTAGGCGAGACCCAGTACTTC CARSTELAGVSLGETQYF TRBV28*01 TRBJ2-5*01 4.0 241.0 _CARSTELAGVSLGETQYF 1 3605 PGT-178 PGT 0.7 1480 NEG 54 3551 1 HomoSapiens PGT LLAGIGTVPI Naive T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*02:01 B2M MHCI -14715 chip0516_31450 10.16 10.1 Chip4 healthy_6 healthy TGCGCCAGCAGCGGGGACGGAATGAACACTGAAGCTTTCTTT CASSGDGMNTEAFF TRBV10-2*01 TRBJ1-1*01 13.0 991.0 _CASSGDGMNTEAFF 131 5938 EBV-LMP2A EBV 0.95 700 EBV-LMP2A 70 5868 9 EBV LMP2A CLGGLLTMV effector memory T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*02:01 B2M MHCI -14716 chip0516_696704 8.86 13.75 Chip4 healthy_8 healthy CGTGCTGTCTTTCGCACCGGTTCTATTTT RAVFcg?HRFYF TRAV41*01 TRAJ49*01 4.0 283.0 RAVFcg?HRFYF_ 1 3688 EBNA3A-158-166 EBV 1.0 444 NEG 85 3603 11 EBV EBNA3A QAKWRLQTL effector T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-B*08:01 B2M MHCI -14717 chip0516_550098 6.62 12.52 Chip4 healthy_6 healthy TGCAGTGCTCCAGACCGGGACGAAGAGGGTCAGCCCCAGCATTTT CSAPDRDEEGQPQHF TRBV20-1*01 TRBJ1-5*01 2.0 70.0 _CSAPDRDEEGQPQHF 1 4236 GAD65-114-123 GAD65 1.0 5 NEG 66 4170 7 HomoSapiens GAD65 VMNILLQYVV transitional T cells between effector and memory populations PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*02:01 B2M MHCI -14718 chip0516_67276 6.76 13.47 Chip4 healthy_8 healthy TGTGCTCTAAGTGGCCGGGGACATGCGCTTT CALSG??cGDMRF TRAV16*01 TRAJ43*01 1.0 26.0 CALSG??cGDMRF_ 1 4680 NP30-38 FLU 0.79 72 NP30-38 62 4618 7 InfluenzaA NP RPIIRPATL transitional T cells between effector and memory populations PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-B*08:01 B2M MHCI -14719 chip0516_401227 11.24 12.53 Chip4 healthy_6 healthy TGCGCCAGCAGCGGGGACGGAATGAACACTGAAGCTTTCTCT CASSGDGMNTEAFS TRBV10-2*01 TRBJ1-1*01 1.0 15.0 _CASSGDGMNTEAFS 2 4003 EBV-LMP2A EBV 0.92 700 EBV-LMP2A 73 3930 11 EBV LMP2A CLGGLLTMV effector T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*02:01 B2M MHCI -14720 chip0516_139605 -4.21 11.23 Chip4 healthy_7 healthy TGTGCCGCCCCTCGGTGGCAACAATCAGCTGATTTTT CAAPRW??cNNQLIF TRAV8-1*01 TRAJ4*01 11.0 1102.0 CAAPRW??cNNQLIF_ 1 5217 PREINS-2-10 INS 0.85 37 PREINS-2-10 65 5152 1 HomoSapiens PREINS ALWMRLLPL Naive T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*02:01 B2M MHCI -14721 chip0516_603865 10.47 11.59 Chip4 healthy_6 healthy _ 6746 4445 EBV-LMP2A EBV 0.79 700 EBV-LMP2A 81 4364 9 EBV LMP2A CLGGLLTMV effector memory T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*02:01 B2M MHCI -14722 chip0516_92779 5.51 9.14 Chip4 healthy_6 healthy _ 6746 6716 EBV-LMP2-FLY EBV 0.84 355 EBV-LMP2-FLY 79 6637 6 EBV LMP2 FLYALALLL central memory T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*02:01 B2M MHCI -14723 chip0516_425184 12.38 8.62 Chip4 healthy_6 healthy TGTGCTGTTCTAATGGATAGCAACTATCAGTTAATCTGG CAVLMDSNYQLIW TRAV21*01 TRAJ33*01 1.0 53.0 TGCGCCAGCAGCGGGGCCGGCATGAACACTGAAGCTTTCTTT CASSGAGMNTEAFF TRBV10-2*01 TRBJ1-1*01 2.0 15.0 CAVLMDSNYQLIW_CASSGAGMNTEAFF 1 4013 EBV-LMP2A EBV 0.94 700 EBV-LMP2A 61 3952 10 EBV LMP2A CLGGLLTMV effector memory T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*02:01 B2M MHCI -14724 chip0516_499445 13.41 8.28 Chip4 healthy_6 healthy TGTGCCAGCAGCTCGGGACAGGGGGACAATGAGCAGTTCTTC CASSSGQGDNEQFF TRBV11-3*01 TRBJ2-1*01 8.0 499.0 _CASSSGQGDNEQFF 12 2304 EBV-BLMF1 EBV 0.62 2531 NEG 83 2221 10 EBV BLMF1 GLCTLVAML effector memory T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*02:01 B2M MHCI -14725 chip0516_282332 14.66 12.73 Chip4 healthy_6 healthy _ 6746 2195 EBV-BLMF1 EBV 1.0 2531 NEG 62 2133 12 EBV BLMF1 GLCTLVAML effector T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*02:01 B2M MHCI -14726 chip0516_756554 12.39 7.76 Chip4 healthy_8 healthy TGTGCCAGCAGCTTAGGACAGGCCTACGAGCAGTACTTC CASSLGQAYEQYF TRBV7-8*01 TRBJ2-7*01 9.0 423.0 _CASSLGQAYEQYF 175 4435 EBNA3A-193-201 EBV 0.93 1022 EBNA3A-193-201 82 4353 10 EBV EBNA3A FLRGRAYGL effector memory T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-B*08:01 B2M MHCI -14727 chip0516_454619 -4.6 9.39 Chip4 healthy_9 healthy _ 6746 5166 ZNT8-YAK-9 ZNT8 0.67 59 ZNT8-YAK-9 63 5103 2 HomoSapiens ZNT8 YAKWKLCSA Naive T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-B*08:01 B2M MHCI -14728 chip0516_300737 0.77 8.69 Chip4 healthy_7 healthy _ 6746 5684 PGT-178 PGT 0.64 1480 PGT-178 70 5614 4 HomoSapiens PGT LLAGIGTVPI Naive T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*02:01 B2M MHCI -14729 chip0516_832180 -2.13 11.29 Chip4 healthy_7 healthy TGTGTGGTGCCCTCTCATTATGGAGGCAGCCACGGCCCTCTCATCTTT CVVPSHYGGSHGPLIF TRAV10*01 TRAJ42*01 26.0 1020.0 TGTGCCAGCAGCCCTGGGGTTTACGAGCAGTACTTC CASSPGVYEQYF TRBV7-7*01 TRBJ2-7*01 18.0 1212.0 CVVPSHYGGSHGPLIF_CASSPGVYEQYF 1 4461 NEF-136-145 FLU 0.67 9 NEG 81 4380 4 InfluenzaA NEF PLTFGWCYKL Naive T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*02:01 B2M MHCI -14730 chip0516_868606 -3.3 8.56 Chip4 healthy_8 healthy TGTGCTTTTACCCTTAACGACTACAAGCTCAGCTTT CAFTLNDYKLSF TRAV9-2*01 TRAJ20*01 18.0 1659.0 TGTGCCAGCAGTGGGACAGTTAGCAATCAGCCCCAGCATTTT CASSGTVSNQPQHF TRBV6-1*01 TRBJ1-5*01 4.0 64.0 CAFTLNDYKLSF_CASSGTVSNQPQHF 1 5461 G6PC2-PTH-9 IGRP 0.89 7 G6PC2-PTH-9 82 5379 2 HomoSapiens G6PC2 PTHEEHLFY Naive T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*01:01 B2M MHCI -14731 chip0516_752903 10.7 11.27 Chip4 healthy_6 healthy TGCGCCAGCAGCGGGGACGGAATGAACACTGAAGCTTTCTTT CASSGDGMNTEAFF TRBV10-2*01 TRBJ1-1*01 18.0 833.0 _CASSGDGMNTEAFF 131 5369 EBV-LMP2A EBV 0.98 700 EBV-LMP2A 68 5301 9 EBV LMP2A CLGGLLTMV effector memory T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*02:01 B2M MHCI -14732 chip0516_718788 11.67 7.57 Chip4 healthy_6 healthy _ 6746 5928 EBV-LMP2A EBV 0.78 700 EBV-LMP2A 59 5869 10 EBV LMP2A CLGGLLTMV effector memory T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*02:01 B2M MHCI -14733 chip0516_307873 10.52 13.77 Chip4 healthy_7 healthy _ 6746 1965 EBV-LMP2-FLY EBV 1.0 355 NEG 59 1906 11 EBV LMP2 FLYALALLL effector T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*02:01 B2M MHCI -14734 chip0516_383758 5.27 8.77 Chip4 healthy_6 healthy _ 6746 5878 EBV-LMP2-FLY EBV 1.0 355 NEG 65 5813 6 EBV LMP2 FLYALALLL central memory T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*02:01 B2M MHCI -14735 chip0516_117209 10.85 8.93 Chip4 healthy_6 healthy _ 6746 6282 EBV-LMP2A EBV 0.89 700 EBV-LMP2A 69 6213 10 EBV LMP2A CLGGLLTMV effector memory T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*02:01 B2M MHCI -14736 chip0516_296796 11.39 7.36 Chip4 healthy_6 healthy TGTGCTACGGAAGGGGATTCAGGATACAGCACCCCCACCTTT CATEGDSGYSTPTF TRAV17*01 TRAJ11*01 5.0 342.0 TGTGCCAGCAGTCAACAGGGGGGTAACTATGGCTACACCTTC CASSQQGGNYGYTF TRBV6-1*01 TRBJ1-2*01 17.0 731.0 CATEGDSGYSTPTF_CASSQQGGNYGYTF 1 4845 EBV-LMP2-FLY EBV 0.96 355 EBV-LMP2-FLY 69 4776 10 EBV LMP2 FLYALALLL effector memory T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*02:01 B2M MHCI -14737 chip0516_783460 7.1 14.15 Chip4 healthy_7 healthy TGTGCAATGAGTCCCGATAGCAGCTATAAATTGATCTTC CAMSPDSSYKLIF TRAV14/DV4*01 TRAJ12*01 28.0 2012.0 TGTGCCAGCAGCCAATTCATGGGGGATACTAACTATGGCTACACCTTC CASSQFMGDTNYGYTF TRBV3-1*01 TRBJ1-2*01 29.0 1965.0 CAMSPDSSYKLIF_CASSQFMGDTNYGYTF 1 3359 M1 FLU 0.92 1250 M1 76 3283 7 InfluenzaA M1 GILGFVFTL transitional T cells between effector and memory populations PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*02:01 B2M MHCI -14738 chip0516_778434 13.42 13.09 Chip4 healthy_6 healthy TGTGCAGAGGACCATGCACTCAACTTC CAEDHALNF TRAV23/DV6*01 TRAJ41*01 1.0 10.0 TGTGCCAGCAGCTCGGGACAGGGGGACAATGAGCAGTTCTTC CASSSGQGDNEQFF TRBV11-3*01 TRBJ2-1*01 12.0 578.0 CAEDHALNF_CASSSGQGDNEQFF 6 2402 EBV-BLMF1 EBV 0.9 2531 NEG 66 2336 11 EBV BLMF1 GLCTLVAML effector T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*02:01 B2M MHCI -14739 chip0516_855429 11.27 12.03 Chip4 healthy_6 healthy _ 6746 4021 EBV-LMP2A EBV 0.94 700 EBV-LMP2A 62 3959 9 EBV LMP2A CLGGLLTMV effector memory T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*02:01 B2M MHCI -14740 chip0516_775780 11.17 12.01 Chip4 healthy_6 healthy _ 6746 3401 EBV-LMP2A EBV 0.79 700 NEG 68 3333 9 EBV LMP2A CLGGLLTMV effector memory T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*02:01 B2M MHCI -14741 chip0516_608158 14.23 8.36 Chip4 healthy_9 healthy _ 6746 3196 EBNA3A-158-166 EBV 1.0 444 NEG 81 3115 10 EBV EBNA3A QAKWRLQTL effector memory T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-B*08:01 B2M MHCI -14742 chip0516_719621 11.65 9.4 Chip4 healthy_6 healthy TGTGCTGTTCTACTGGCTCGCCCCTATCAGTTCATCTGG CAVLLARPYQFIW TRAV21*01 TRAJ33*01 6.0 424.0 CAVLLARPYQFIW_ 1 5215 EBV-LMP2A EBV 0.95 700 EBV-LMP2A 66 5149 10 EBV LMP2A CLGGLLTMV effector memory T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*02:01 B2M MHCI -14743 chip0516_139578 15.1 9.27 Chip4 healthy_9 healthy _ 6746 2084 BZLF1-190-197 EBV 0.83 2156 BZLF1-190-197 66 2018 12 EBV BZLF1 RAKFKQLL effector T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-B*08:01 B2M MHCI -14744 chip0516_269345 -3.73 12.83 Chip4 healthy_9 healthy TGTGCAGCGGGGGGGGCTGGGAGTTACCAACTCACTTTC CAAGGAGSYQLTF TRAV13-1*01 TRAJ28*01 17.0 1320.0 TGTGCCTGGAGTTATGGGCCTTTGGAGCAGTACTTC CAWSYGPLEQYF TRBV30*01 TRBJ2-7*01 2.0 9.0 CAAGGAGSYQLTF_CAWSYGPLEQYF 1 4384 ZNT8-YAY-8 ZNT8 0.55 54 ZNT8-YAY-8 82 4302 1 HomoSapiens ZNT8 YAYAKWKL Naive T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-B*08:01 B2M MHCI -14745 chip0516_762674 10.87 12.66 Chip4 healthy_6 healthy TGCAGCGTTGGGGCGGATGGGACTAATGAAAAACTGTTTTTT CSVGADGTNEKLFF TRBV29-1*01 TRBJ1-4*01 30.0 1715.0 _CSVGADGTNEKLFF 1 3045 EBV-BLMF1 EBV 1.0 2531 NEG 61 2984 11 EBV BLMF1 GLCTLVAML effector T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*02:01 B2M MHCI -14746 chip0516_204468 -3.37 8.24 Chip4 healthy_8 healthy _ 6746 6832 Pol173-181 HIV 0.68 8 Pol173-181 51 6781 2 HIV-1 Pol GPKVKQWPL Naive T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-B*08:01 B2M MHCI -14747 chip0516_250405 6.68 13.01 Chip4 healthy_9 healthy TGTGTGGTGAGCGAAAATGACATGCGCTTT CVVSENDMRF TRAV10*01 TRAJ43*01 1.0 35.0 TGTGCCAGTAGTATGATTCCAGACATGAACACTGAAGCTTTCTTT CASSMIPDMNTEAFF TRBV19*01 TRBJ1-1*01 36.0 1385.0 CVVSENDMRF_CASSMIPDMNTEAFF 1 4017 NP30-38 FLU 0.8 72 NP30-38 61 3956 7 InfluenzaA NP RPIIRPATL transitional T cells between effector and memory populations PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-B*08:01 B2M MHCI -14748 chip0516_392455 5.0 9.79 Chip4 healthy_9 healthy _ 6746 4057 EBNA3A-158-166 EBV 0.84 444 EBNA3A-158-166 60 3997 6 EBV EBNA3A QAKWRLQTL central memory T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-B*08:01 B2M MHCI -14749 chip0516_179607 11.19 11.76 Chip4 healthy_6 healthy TGCGCCAGCAGCGGGGACGGAATGAACACTGAAGCTTTCTTT CASSGDGMNTEAFF TRBV10-2*01 TRBJ1-1*01 9.0 371.0 _CASSGDGMNTEAFF 131 3381 EBV-LMP2A EBV 1.0 700 EBV-LMP2A 75 3306 9 EBV LMP2A CLGGLLTMV effector memory T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*02:01 B2M MHCI -14750 chip0516_3344 12.56 7.05 Chip4 healthy_6 healthy TGTGCTGTGGCCCTCTCCAGCAAATCAACCTTT CAVALSSKSTF TRAV8-3*01 TRAJ27*01 1.0 14.0 TGCGCCAGCAGCGGGGACGGAATGAACACTGAAGCTTTCTTT CASSGDGMNTEAFF TRBV10-2*01 TRBJ1-1*01 13.0 672.0 CAVALSSKSTF_CASSGDGMNTEAFF 50 5625 EBV-LMP2A EBV 0.89 700 EBV-LMP2A 87 5538 10 EBV LMP2A CLGGLLTMV effector memory T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*02:01 B2M MHCI -14751 chip0516_743534 -3.57 8.84 Chip4 healthy_8 healthy _ 6746 6243 gp160-2-10 HIV 0.54 6 gp160-2-10 66 6177 2 HIV-1 gp160 RVKEKYQHL Naive T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-B*08:01 B2M MHCI -14752 chip0516_646148 -2.81 12.74 Chip4 healthy_9 healthy _ 6746 4033 GAD2-MMI-8 GAD65 0.43 40 NEG 54 3979 1 HomoSapiens GAD2 MMIARFKM Naive T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-B*08:01 B2M MHCI -14753 chip0516_643805 11.23 11.03 Chip4 healthy_6 healthy _ 6746 4295 EBV-LMP2A EBV 0.95 700 EBV-LMP2A 77 4218 9 EBV LMP2A CLGGLLTMV effector memory T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*02:01 B2M MHCI -14754 chip0516_94022 -2.78 12.69 Chip4 healthy_7 healthy TGTGCTCTGAGTGAGGCTAACTTTGGAAATGAGAAATTAACCTTT CALSEANFGNEKLTF TRAV19*01 TRAJ48*01 56.0 2035.0 TGTGCCAGTATCCCGAGGTGGGACAGGGGCCTCAATGAGCAGTTCTTC CASIPRWDRGLNEQFF TRBV19*01 TRBJ2-1*01 23.0 1968.0 CALSEANFGNEKLTF_CASIPRWDRGLNEQFF 1 3489 IGRP-152-160-WLI IGRP 1.0 27 NEG 67 3422 1 HomoSapiens IGRP FLWSVFWLI Naive T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*02:01 B2M MHCI -14755 chip0516_583310 6.35 11.81 Chip4 healthy_8 healthy TGTGCCAGCAGTTTAATGGGGACAGGGGGCTTGAGTGAAAAACTGTTTTTT CASSLMGTGGLSEKLFF TRBV28*01 TRBJ1-4*01 24.0 877.0 _CASSLMGTGGLSEKLFF 18 7330 EBNA3A-158-166 EBV 0.65 444 EBNA3A-158-166 69 7261 7 EBV EBNA3A QAKWRLQTL transitional T cells between effector and memory populations PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-B*08:01 B2M MHCI -14756 chip0516_18152 9.69 13.91 Chip4 healthy_8 healthy _ 6746 2562 NP225-233 FLU 0.91 23 NP225-233 55 2507 11 InfluenzaA NP ILKGKFQTA effector T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-B*08:01 B2M MHCI -14757 chip0516_531265 -2.93 8.73 Chip4 healthy_6 healthy _ 6746 6380 M1 FLU 0.92 1250 M1 64 6316 2 InfluenzaA M1 GILGFVFTL Naive T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*02:01 B2M MHCI -14758 chip0516_405891 -3.57 8.73 Chip4 healthy_10 healthy TGTGCCAGCAGCGCTAGCGGGATGAGGGCAGATACGCAGTATTTT CASSASGMRADTQYF TRBV9*01 TRBJ2-3*01 1.0 13.0 _CASSASGMRADTQYF 1 5227 GFAP-HLK-8 GFAP 0.67 28 NEG 55 5172 2 HomoSapiens GFAP HLKRNIVV Naive T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-B*08:01 B2M MHCI -14759 chip0516_43779 11.27 9.8 Chip4 healthy_6 healthy _ 6746 6281 EBV-LMP2A EBV 0.82 700 EBV-LMP2A 68 6213 9 EBV LMP2A CLGGLLTMV effector memory T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*02:01 B2M MHCI -14760 chip0516_250348 -2.88 8.81 Chip4 healthy_8 healthy TGTGCAGCAGTATTTACCTCAGGAACCTACAAATACATCTTT CAAVFTSGTYKYIF TRAV29/DV5*01 TRAJ40*01 72.0 3467.0 TGTGCCAGCAGACTCCGGGACAGCCCCTACGAGCAGTACTTC CASRLRDSPYEQYF TRBV6-1*01 TRBJ2-7*01 17.0 896.0 CAAVFTSGTYKYIF_CASRLRDSPYEQYF 1 6593 ZNT8-VTD-9 ZNT8 0.57 65 NEG 67 6526 2 HomoSapiens ZNT8 VTDAAHLLI Naive T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*01:01 B2M MHCI -14761 chip0516_662001 -2.12 11.52 Chip4 healthy_6 healthy TGTGCCGTGTACCATGGAGGAAGCCAAGGAAATCTCATCTTT CAVYHGGSQGNLIF TRAV12-2*01 TRAJ42*01 13.0 522.0 TGTGCCAGCAGCTTGCAGGGGGATCCCTATGGCTACACCTTC CASSLQGDPYGYTF TRBV5-5*01 TRBJ1-2*01 9.0 581.0 CAVYHGGSQGNLIF_CASSLQGDPYGYTF 1 4817 IGRP-228-236 IGRP 1.0 16 NEG 55 4762 3 HomoSapiens IGRP LNIDLLWSV Naive T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*02:01 B2M MHCI -14762 chip0516_506524 11.71 13.21 Chip4 healthy_7 healthy _ 6746 2369 EBV-BRLF1 EBV 0.86 1264 EBV-BRLF1 73 2296 11 EBV BRLF1 YVLDHLIVV effector T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*02:01 B2M MHCI -14763 chip0516_142030 -2.5 14.83 Chip4 healthy_7 healthy _ 6746 2547 ZNT8-153-161 ZNT8 0.88 41 NEG 57 2490 1 HomoSapiens ZNT8 VVTGVLVYL Naive T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*02:01 B2M MHCI -14764 chip0516_466959 13.37 9.43 Chip4 healthy_9 healthy TGTGCCAGCAGCATAGTTCGGGGGGCCGGGGAGCTGTTTTTT CASSIVRGAGELFF TRBV3-1*01 TRBJ2-2*01 13.0 983.0 _CASSIVRGAGELFF 1 3840 BZLF1-190-197 EBV 0.91 2156 BZLF1-190-197 62 3778 10 EBV BZLF1 RAKFKQLL effector memory T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-B*08:01 B2M MHCI -14765 chip0516_404037 8.5 11.49 Chip4 healthy_8 healthy TGTGCCAGCAGCTTAGGACAGGCCTACGAGCAGTACTTC CASSLGQAYEQYF TRBV7-8*01 TRBJ2-7*01 13.0 970.0 _CASSLGQAYEQYF 175 4695 EBNA3A-193-201 EBV 0.96 1022 EBNA3A-193-201 66 4629 7 EBV EBNA3A FLRGRAYGL transitional T cells between effector and memory populations PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-B*08:01 B2M MHCI -14766 chip0516_290861 11.26 12.56 Chip4 healthy_6 healthy _ 6746 3640 EBV-LMP2A EBV 0.91 700 EBV-LMP2A 63 3577 11 EBV LMP2A CLGGLLTMV effector T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*02:01 B2M MHCI -14767 chip0516_569148 -3.88 12.55 Chip4 healthy_8 healthy _ 6746 5184 BZLF1-190-197 EBV 0.46 2156 BZLF1-190-197 64 5120 1 EBV BZLF1 RAKFKQLL Naive T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-B*08:01 B2M MHCI -14768 chip0516_21506 12.51 8.95 Chip4 healthy_8 healthy _ 6746 3612 EBNA3A-158-166 EBV 0.89 444 EBNA3A-158-166 71 3541 10 EBV EBNA3A QAKWRLQTL effector memory T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-B*08:01 B2M MHCI -14769 chip0516_869358 7.24 14.23 Chip4 healthy_7 healthy _ 6746 3026 M1 FLU 0.9 1250 M1 66 2960 7 InfluenzaA M1 GILGFVFTL transitional T cells between effector and memory populations PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*02:01 B2M MHCI -14770 chip0516_802979 12.11 7.19 Chip4 healthy_6 healthy TGCGCCAGCAGCGGGGACGGAATGAACACTGAAGCTTTCTTT CASSGDGMNTEAFF TRBV10-2*01 TRBJ1-1*01 1.0 10.0 _CASSGDGMNTEAFF 131 4463 EBV-LMP2A EBV 1.0 700 EBV-LMP2A 76 4387 10 EBV LMP2A CLGGLLTMV effector memory T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*02:01 B2M MHCI -14771 chip0516_104642 11.74 13.37 Chip4 healthy_8 healthy _ 6746 2254 BZLF1-190-197 EBV 1.0 2156 NEG 59 2195 11 EBV BZLF1 RAKFKQLL effector T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-B*08:01 B2M MHCI -14772 chip0516_752010 11.36 10.59 Chip4 healthy_6 healthy TGCGCCAGCAGCGGGGACGGAATGAACACTGAAGCTTTCTTT CASSGDGMNTEAFF TRBV10-2*01 TRBJ1-1*01 18.0 838.0 _CASSGDGMNTEAFF 131 4556 EBV-LMP2A EBV 1.0 700 EBV-LMP2A 63 4493 9 EBV LMP2A CLGGLLTMV effector memory T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*02:01 B2M MHCI -14773 chip0516_407810 13.06 7.89 Chip4 healthy_6 healthy TGTGCTGTGGCCCTCTCAAGCAAATCAACCTTT CAVALSSKSTF TRAV8-3*01 TRAJ27*01 9.0 848.0 TGCGCCAGCGGCGGGGCCGGAGTGAACACTGAAGCTTTCTCT CASGGAGVNTEAFS TRBV10-2*01 TRBJ1-1*01 2.0 147.0 CAVALSSKSTF_CASGGAGVNTEAFS 1 5025 EBV-LMP2A EBV 0.85 700 EBV-LMP2A 74 4951 10 EBV LMP2A CLGGLLTMV effector memory T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*02:01 B2M MHCI -14774 chip0516_732853 10.13 10.48 Chip4 healthy_6 healthy _ 6746 6222 EBV-LMP2A EBV 0.93 700 EBV-LMP2A 84 6138 9 EBV LMP2A CLGGLLTMV effector memory T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*02:01 B2M MHCI -14775 chip0516_797042 10.95 8.4 Chip4 healthy_6 healthy _ 6746 6402 EBV-LMP2A EBV 0.89 700 EBV-LMP2A 79 6323 10 EBV LMP2A CLGGLLTMV effector memory T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*02:01 B2M MHCI -14776 chip0516_283238 11.32 10.92 Chip4 healthy_6 healthy TGTGCTGTTCTAATGGATAACAACTATCAGTTAATCTGG CAVLMDNNYQLIW TRAV12-3*01 TRAJ33*01 3.0 100.0 CAVLMDNNYQLIW_ 1 4690 EBV-LMP2A EBV 0.97 700 EBV-LMP2A 58 4632 9 EBV LMP2A CLGGLLTMV effector memory T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*02:01 B2M MHCI -14777 chip0516_224890 11.3 12.59 Chip4 healthy_6 healthy _ 6746 3281 EBV-LMP2A EBV 0.71 700 EBV-LMP2A 57 3224 11 EBV LMP2A CLGGLLTMV effector T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*02:01 B2M MHCI -14778 chip0516_144657 -1.79 11.34 Chip4 healthy_7 healthy TGTGCAGCAAGTAAGAGGGCGGATCTGAAAAGCTGGTCGTT CAASKRgc?GSEKLVV TRAV13-1*01 TRAJ57*01 18.0 1446.0 CAASKRgc?GSEKLVV_ 1 3981 PGT-178 PGT 0.77 1480 PGT-178 54 3927 3 HomoSapiens PGT LLAGIGTVPI Naive T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*02:01 B2M MHCI -14779 chip0516_882628 9.26 9.56 Chip4 healthy_8 healthy TGTGCTGTGACCCTTACCCTCTACTCTGGGGCTGGGAGTTACCAACTCACTTTC CAVTLTLYSGAGSYQLTF TRAV21*01 TRAJ28*01 20.0 1121.0 TGTGCCAGCAGTTTAATGGGGACAGGGGGCTTGAGTGAAAAACTGTTTTTT CASSLMGTGGLSEKLFF TRBV28*01 TRBJ1-4*01 4.0 99.0 CAVTLTLYSGAGSYQLTF_CASSLMGTGGLSEKLFF 19 5166 EBNA3A-158-166 EBV 0.87 444 NEG 69 5097 8 EBV EBNA3A QAKWRLQTL effector memory T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-B*08:01 B2M MHCI -14780 chip0516_310452 5.54 10.18 Chip4 healthy_9 healthy TGTGCTTCCACGCGGGGCCTATCCTCTGGGGCTGGGAGTTACCCCCTCCCTTTC CASTRGLSSGAGSYPLPF TRAV6*01 TRAJ28*01 9.0 477.0 TGTGCCAGCAGTTTATTGGTGGGGGTCGGAAACACCATATATTTT CASSLLVGVGNTIYF TRBV28*01 TRBJ1-3*01 10.0 689.0 CASTRGLSSGAGSYPLPF_CASSLLVGVGNTIYF 1 5738 EBNA3A-158-166 EBV 0.83 444 EBNA3A-158-166 59 5679 6 EBV EBNA3A QAKWRLQTL central memory T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-B*08:01 B2M MHCI -14781 chip0516_547832 -2.41 15.46 Chip4 healthy_8 healthy TGTGCCTTTAGAACCGGTAACCAGTTCTATTTT CAFRTGNQFYF TRAV24*01 TRAJ49*01 14.0 2019.0 CAFRTGNQFYF_ 1 1655 gp160-586-593 HIV 0.77 30 gp160-586-593 53 1602 1 HIV-1 gp160 YLKDQQLL Naive T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-B*08:01 B2M MHCI -14782 chip0516_543595 7.03 12.37 Chip4 healthy_8 healthy TGTGCCAGCAGTTTAATGGGGACAGGGGGCTTGAGTGAAAAACTGTTTTTT CASSLMGTGGLSEKLFF TRBV28*01 TRBJ1-4*01 13.0 283.0 _CASSLMGTGGLSEKLFF 18 5228 EBNA3A-158-166 EBV 0.65 444 EBNA3A-158-166 47 5181 7 EBV EBNA3A QAKWRLQTL transitional T cells between effector and memory populations PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-B*08:01 B2M MHCI -14783 chip0516_601809 11.95 13.35 Chip4 healthy_8 healthy TGTGCCGTGAAGACGGACACCAATGCAGGCAAATCAACCTTT CAVKTDTNAGKSTF TRAV12-2*01 TRAJ27*01 23.0 1362.0 CAVKTDTNAGKSTF_ 20 2473 EBNA3A-193-201 EBV 0.61 1022 NEG 60 2413 11 EBV EBNA3A FLRGRAYGL effector T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-B*08:01 B2M MHCI -14784 chip0516_780985 8.72 10.05 Chip4 healthy_6 healthy TGTGCTGTGGCCCTCTCAAGCAAATCAACCTTT CAVALSSKSTF TRAV8-3*01 TRAJ27*01 8.0 615.0 CAVALSSKSTF_ 58 8855 EBV-LMP2A EBV 0.9 700 EBV-LMP2A 76 8779 8 EBV LMP2A CLGGLLTMV effector memory T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*02:01 B2M MHCI -14785 chip0516_66310 12.44 13.02 Chip4 healthy_6 healthy _ 6746 3636 EBV-LMP2A EBV 0.96 700 EBV-LMP2A 81 3555 11 EBV LMP2A CLGGLLTMV effector T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*02:01 B2M MHCI -14786 chip0516_329104 10.44 10.18 Chip4 healthy_6 healthy _ 6746 7046 EBV-LMP2A EBV 0.96 700 EBV-LMP2A 63 6983 9 EBV LMP2A CLGGLLTMV effector memory T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*02:01 B2M MHCI -14787 chip0516_480387 7.09 13.01 Chip4 healthy_9 healthy _ 6746 3767 NP380-388 FLU 0.73 60 NEG 66 3701 7 InfluenzaA NP ELRSRYWAI transitional T cells between effector and memory populations PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-B*08:01 B2M MHCI -14788 chip0516_402989 11.35 11.14 Chip4 healthy_8 healthy _ 6746 4300 EBNA3A-193-201 EBV 0.63 1022 EBNA3A-193-201 63 4237 9 EBV EBNA3A FLRGRAYGL effector memory T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-B*08:01 B2M MHCI -14789 chip0516_230725 -2.16 15.92 Chip4 healthy_9 healthy _ 6746 987 INS-MAL-8 INS 0.7 38 NEG 46 941 1 HomoSapiens INS MALWMRLL Naive T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-B*08:01 B2M MHCI -14790 chip0516_23083 -1.8 10.63 Chip4 healthy_7 healthy TGTGCTTTCGTGGATAGCAACTATCAGTTAATCTGG CAFVDSNYQLIW TRAV38-1*01 TRAJ33*01 1.0 76.0 CAFVDSNYQLIW_ 1 3811 HCVNS4B-1807-1816 HCV 0.7 74 NEG 65 3746 3 HCV NS4B LLFNILGGWV Naive T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*02:01 B2M MHCI -14791 chip0516_880819 -2.75 10.49 Chip4 healthy_6 healthy _ 6746 5923 PGT-178 PGT 0.69 1480 NEG 71 5852 4 HomoSapiens PGT LLAGIGTVPI Naive T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*02:01 B2M MHCI -14792 chip0516_386631 12.18 13.45 Chip4 healthy_6 healthy TGCAGCGTTGGGACAGGGGGAACTAATGAAAAACTGTTTTTT CSVGTGGTNEKLFF TRBV29-1*01 TRBJ1-4*01 31.0 2029.0 _CSVGTGGTNEKLFF 638 1759 EBV-BLMF1 EBV 0.8 2531 NEG 71 1688 11 EBV BLMF1 GLCTLVAML effector T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*02:01 B2M MHCI -14793 chip0516_840005 10.5 10.43 Chip4 healthy_6 healthy _ 6746 4638 EBV-LMP2A EBV 0.89 700 EBV-LMP2A 60 4578 9 EBV LMP2A CLGGLLTMV effector memory T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*02:01 B2M MHCI -14794 chip0516_114449 13.55 10.56 Chip4 healthy_8 healthy TGTGCCAGCAGCTCCGGACAGGCCTACGAGCAGTACTTC CASSSGQAYEQYF TRBV7-8*01 TRBJ2-7*01 20.0 1392.0 _CASSSGQAYEQYF 49 4800 EBNA3A-193-201 EBV 0.93 1022 EBNA3A-193-201 71 4729 12 EBV EBNA3A FLRGRAYGL effector T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-B*08:01 B2M MHCI -14795 chip0516_153461 5.65 8.89 Chip4 healthy_6 healthy TGTGCTGTGGCCCTCTCAAGCAAATCAACCTTT CAVALSSKSTF TRAV8-3*01 TRAJ27*01 3.0 228.0 TGCGCCAGCAGCGGGGACGGAATGAACACTGAAGCTTTCTTT CASSGDGMNTEAFF TRBV10-2*01 TRBJ1-1*01 2.0 44.0 CAVALSSKSTF_CASSGDGMNTEAFF 50 7801 EBV-LMP2A EBV 0.86 700 EBV-LMP2A 89 7712 6 EBV LMP2A CLGGLLTMV central memory T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*02:01 B2M MHCI -14796 chip0516_495958 14.04 8.27 Chip4 healthy_8 healthy TGCATCCTGCCCCTTGCTGGTGGTACTAGCTATGGAAAGCTGACATTT CILPLAGGTSYGKLTF TRAV26-2*01 TRAJ52*01 2.0 68.0 TGTGCCAGCAGCTCCGGACAGGCCTACGAGCAGTACTTC CASSSGQAYEQYF TRBV7-8*01 TRBJ2-7*01 11.0 713.0 CILPLAGGTSYGKLTF_CASSSGQAYEQYF 40 2899 EBNA3A-193-201 EBV 0.96 1022 EBNA3A-193-201 64 2835 10 EBV EBNA3A FLRGRAYGL effector memory T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-B*08:01 B2M MHCI -14797 chip0516_190309 -1.1 10.24 Chip4 healthy_7 healthy _ 6746 3978 IGRP-152-160-WLI IGRP 1.0 27 NEG 58 3920 3 HomoSapiens IGRP FLWSVFWLI Naive T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*02:01 B2M MHCI -14798 chip0516_583895 6.13 13.36 Chip4 healthy_7 healthy _ 6746 4393 M1 FLU 0.69 1250 M1 72 4321 7 InfluenzaA M1 GILGFVFTL transitional T cells between effector and memory populations PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*02:01 B2M MHCI -14799 chip0516_628020 11.12 11.05 Chip4 healthy_6 healthy _ 6746 4471 EBV-LMP2A EBV 0.8 700 EBV-LMP2A 61 4410 9 EBV LMP2A CLGGLLTMV effector memory T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*02:01 B2M MHCI -14800 chip0516_307736 11.72 12.86 Chip4 healthy_6 healthy TGTGCTGTGGCCCTCTCAAGCAAATCAACCTTT CAVALSSKSTF TRAV8-3*01 TRAJ27*01 4.0 327.0 CAVALSSKSTF_ 58 2695 EBV-LMP2A EBV 1.0 700 NEG 55 2640 11 EBV LMP2A CLGGLLTMV effector T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*02:01 B2M MHCI -14801 chip0516_580892 11.41 11.5 Chip4 healthy_6 healthy _ 6746 3701 EBV-LMP2A EBV 0.96 700 EBV-LMP2A 67 3634 9 EBV LMP2A CLGGLLTMV effector memory T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*02:01 B2M MHCI -14802 chip0516_680780 9.49 13.9 Chip4 healthy_9 healthy _ 6746 2434 NP380-388 FLU 0.66 60 NP380-388 47 2387 11 InfluenzaA NP ELRSRYWAI effector T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-B*08:01 B2M MHCI -14803 chip0516_698664 -3.48 13.68 Chip4 healthy_7 healthy TGTCCTGTAACTGATATAGGGCACTCACAATGACATGCGCTTT CPVTDIG??cTHNDMRF TRAV8-2*01,TRAV8-4*01 TRAJ43*01 2.0 45.0 CPVTDIG??cTHNDMRF_ 1 3299 PGT-178 PGT 0.57 1480 NEG 62 3237 1 HomoSapiens PGT LLAGIGTVPI Naive T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*02:01 B2M MHCI -14804 chip0516_7609 -4.2 11.33 Chip4 healthy_9 healthy TGTGCCAGCAGCGTAGGCGGGAACACTGAAGCTTTCTTT CASSVGGNTEAFF TRBV9*01 TRBJ1-1*01 6.0 169.0 _CASSVGGNTEAFF 1 4654 NP225-233 FLU 0.63 23 NEG 57 4597 1 InfluenzaA NP ILKGKFQTA Naive T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-B*08:01 B2M MHCI -14805 chip0516_222861 11.3 11.72 Chip4 healthy_6 healthy TGTGCTGTGGCCCTCTCAAGCAAATCAACCTTT CAVALSSKSTF TRAV8-3*01 TRAJ27*01 18.0 1549.0 CAVALSSKSTF_ 58 3499 EBV-LMP2A EBV 0.84 700 EBV-LMP2A 63 3436 9 EBV LMP2A CLGGLLTMV effector memory T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*02:01 B2M MHCI -14806 chip0516_734457 12.39 13.25 Chip4 healthy_8 healthy TGCATCCTGCCCCTTGCTGGTGGTACTAGCTATGGAAAGCTGACATTT CILPLAGGTSYGKLTF TRAV26-2*01 TRAJ52*01 32.0 1988.0 CILPLAGGTSYGKLTF_ 55 2563 EBNA3A-193-201 EBV 0.82 1022 EBNA3A-193-201 56 2507 11 EBV EBNA3A FLRGRAYGL effector T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-B*08:01 B2M MHCI -14807 chip0516_252236 8.6 13.95 Chip4 healthy_7 healthy _ 6746 2575 M1 FLU 1.0 1250 NEG 61 2514 11 InfluenzaA M1 GILGFVFTL effector T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*02:01 B2M MHCI -14808 chip0516_663546 12.21 8.69 Chip4 healthy_8 healthy TGCATCCTGCCCCTTGCTGGTGGTACTCGCTCTGGACAGCTGACCTTT CILPLAGGTRSGQLTF TRAV26-2*01 TRAJ52*01 16.0 1015.0 TGTGCCAGCAGCTTAGGACAGGCCTACGAGCAGTACTTC CASSLGQAYEQYF TRBV7-8*01 TRBJ2-7*01 7.0 331.0 CILPLAGGTRSGQLTF_CASSLGQAYEQYF 1 3830 EBNA3A-193-201 EBV 0.84 1022 EBNA3A-193-201 61 3769 10 EBV EBNA3A FLRGRAYGL effector memory T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-B*08:01 B2M MHCI -14809 chip0516_861658 11.98 8.52 Chip4 healthy_6 healthy _ 6746 4457 EBV-LMP2A EBV 0.97 700 EBV-LMP2A 62 4395 10 EBV LMP2A CLGGLLTMV effector memory T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*02:01 B2M MHCI -14810 chip0516_750236 12.09 10.55 Chip4 healthy_6 healthy TGTGCCAGCAGCTCGGGACAGGGGGACAATGAGCAGTTCTTC CASSSGQGDNEQFF TRBV11-3*01 TRBJ2-1*01 5.0 326.0 _CASSSGQGDNEQFF 12 5271 EBV-BLMF1 EBV 0.96 2531 EBV-BLMF1 61 5210 9 EBV BLMF1 GLCTLVAML effector memory T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*02:01 B2M MHCI -14811 chip0516_795310 11.3 11.28 Chip4 healthy_6 healthy TGCGCCCGAAGCGGGGACGGAATGAACAGTGAAGCTGTCTTT CARSGDGMNSEAVF TRBV10-2*01 TRBJ1-1*01 4.0 370.0 _CARSGDGMNSEAVF 1 3979 EBV-LMP2A EBV 1.0 700 EBV-LMP2A 60 3919 9 EBV LMP2A CLGGLLTMV effector memory T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*02:01 B2M MHCI -14812 chip0516_874211 6.17 12.5 Chip4 healthy_8 healthy _ 6746 5152 NP30-38 FLU 0.81 72 NP30-38 58 5094 7 InfluenzaA NP RPIIRPATL transitional T cells between effector and memory populations PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-B*08:01 B2M MHCI -14813 chip0516_762722 11.24 11.12 Chip4 healthy_6 healthy TGCGCCAGCAGCGGGGACGGAATGAACACTGAAGCTTTCTTT CASSGDGMNTEAFF TRBV10-2*01 TRBJ1-1*01 8.0 527.0 _CASSGDGMNTEAFF 131 4296 EBV-LMP2A EBV 0.85 700 EBV-LMP2A 60 4236 9 EBV LMP2A CLGGLLTMV effector memory T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*02:01 B2M MHCI -14814 chip0516_388044 11.39 10.09 Chip4 healthy_6 healthy TGTGCTGTTCTAATGGATAGCAACTATCAGTTAATCTGG CAVLMDSNYQLIW TRAV21*01 TRAJ33*01 28.0 2016.0 TGCGCCAGCAGCGGGGACGGAATGAACACTGAAGATTTCTTT CASSGDGMNTEDFF TRBV10-2*01 TRBJ1-1*01 25.0 988.0 CAVLMDSNYQLIW_CASSGDGMNTEDFF 1 4386 EBV-LMP2A EBV 0.88 700 EBV-LMP2A 54 4332 9 EBV LMP2A CLGGLLTMV effector memory T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*02:01 B2M MHCI -14815 chip0516_218314 9.54 13.14 Chip4 healthy_6 healthy TGTGCCAGCGGGGCCCAGGGAGGAGGCTATGGCTACACCTTC CASGAQGGGYGYTF TRBV6-1*01 TRBJ1-2*01 15.0 1340.0 _CASGAQGGGYGYTF 3 4410 EBV-LMP2-FLY EBV 0.78 355 NEG 49 4361 6 EBV LMP2 FLYALALLL central memory T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*02:01 B2M MHCI -14816 chip0516_466936 -3.11 10.81 Chip4 healthy_8 healthy _ 6746 6192 NP44-52 FLU 0.84 474 NP44-52 52 6140 4 InfluenzaA NP CTELKLSDY Naive T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*01:01 B2M MHCI -14817 chip0516_722225 6.61 13.6 Chip4 healthy_7 healthy _ 6746 3393 M1 FLU 1.0 1250 M1 51 3342 7 InfluenzaA M1 GILGFVFTL transitional T cells between effector and memory populations PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*02:01 B2M MHCI -14818 chip0516_745803 10.32 10.7 Chip4 healthy_6 healthy _ 6746 7322 EBV-LMP2A EBV 0.91 700 EBV-LMP2A 56 7266 9 EBV LMP2A CLGGLLTMV effector memory T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*02:01 B2M MHCI -14819 chip0516_758882 9.74 13.19 Chip4 healthy_6 healthy TGTGCCAGCAGTCAACAGGGGGGTAACTATGGCTACACCTTC CASSQQGGNYGYTF TRBV6-1*01 TRBJ1-2*01 27.0 2295.0 _CASSQQGGNYGYTF 5 2503 EBV-LMP2-FLY EBV 0.82 355 NEG 51 2452 6 EBV LMP2 FLYALALLL central memory T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*02:01 B2M MHCI -14820 chip0516_547709 11.58 9.07 Chip4 healthy_8 healthy TGTGCCAGCAGCTTAGGACAGGCCTACGAGCAGTACTTC CASSLGQAYEQYF TRBV7-8*01 TRBJ2-7*01 35.0 1964.0 _CASSLGQAYEQYF 175 4348 EBNA3A-193-201 EBV 0.78 1022 EBNA3A-193-201 65 4283 10 EBV EBNA3A FLRGRAYGL effector memory T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-B*08:01 B2M MHCI -14821 chip0516_276007 5.59 9.13 Chip4 healthy_8 healthy TGTGCCAGCAGCTTAGGACAGGCCTACGAGCAGTACTTC CASSLGQAYEQYF TRBV7-8*01 TRBJ2-7*01 6.0 370.0 _CASSLGQAYEQYF 175 5132 EBNA3A-193-201 EBV 0.83 1022 EBNA3A-193-201 67 5065 6 EBV EBNA3A FLRGRAYGL central memory T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-B*08:01 B2M MHCI -14822 chip0516_563959 11.62 13.25 Chip4 healthy_6 healthy _ 6746 2818 EBV-LMP2A EBV 1.0 700 NEG 68 2750 11 EBV LMP2A CLGGLLTMV effector T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*02:01 B2M MHCI -14823 chip0516_792740 -3.93 9.91 Chip4 healthy_8 healthy _ 6746 4646 EBNA3A-158-166 EBV 0.73 444 NEG 55 4591 2 EBV EBNA3A QAKWRLQTL Naive T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-B*08:01 B2M MHCI -14824 chip0516_768820 12.68 8.51 Chip4 healthy_7 healthy _ 6746 3276 EBV-LMP2-FLY EBV 0.86 355 NEG 58 3218 10 EBV LMP2 FLYALALLL effector memory T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*02:01 B2M MHCI -14825 chip0516_884641 4.8 10.42 Chip4 healthy_6 healthy _ 6746 3384 EBV-LMP1-1 EBV 0.96 237 EBV-LMP1-1 50 3334 6 EBV LMP1 YLLEMLWRL central memory T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*02:01 B2M MHCI -14826 chip0516_479174 11.98 9.02 Chip4 healthy_6 healthy TGCGCCAGCAGCGGGGACGGAACGAACACTGAAGCTTTCTTT CASSGDGTNTEAFF TRBV10-2*01 TRBJ1-1*01 1.0 16.0 _CASSGDGTNTEAFF 2 4518 EBV-LMP2A EBV 0.94 700 EBV-LMP2A 67 4451 10 EBV LMP2A CLGGLLTMV effector memory T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*02:01 B2M MHCI -14827 chip0516_433314 5.55 12.27 Chip4 healthy_8 healthy _ 6746 4546 G6PC2-YVM-8 IGRP 0.73 8 NEG 54 4492 7 HomoSapiens G6PC2 YVMVTAAL transitional T cells between effector and memory populations PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-B*08:01 B2M MHCI -14828 chip0516_211209 12.89 8.66 Chip4 healthy_9 healthy _ 6746 2949 BZLF1-190-197 EBV 1.0 2156 BZLF1-190-197 58 2891 10 EBV BZLF1 RAKFKQLL effector memory T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-B*08:01 B2M MHCI -14829 chip0516_617379 11.41 9.0 Chip4 healthy_6 healthy _ 6746 5019 EBV-LMP2A EBV 0.94 700 EBV-LMP2A 60 4959 10 EBV LMP2A CLGGLLTMV effector memory T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*02:01 B2M MHCI -14830 chip0516_97014 -3.31 10.85 Chip4 healthy_9 healthy _ 6746 4153 Nef90-97 HIV 0.67 8 NEG 51 4102 1 HIV-1 Nef FLKEKGGL Naive T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-B*08:01 B2M MHCI -14831 chip0516_687547 11.6 9.84 Chip4 healthy_6 healthy _ 6746 4019 EBV-LMP2A EBV 0.92 700 EBV-LMP2A 61 3958 9 EBV LMP2A CLGGLLTMV effector memory T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*02:01 B2M MHCI -14832 chip0516_435003 5.87 12.1 Chip4 healthy_10 healthy _ 6746 4910 EBNA3A-193-201 EBV 0.77 1022 EBNA3A-193-201 59 4851 7 EBV EBNA3A FLRGRAYGL transitional T cells between effector and memory populations PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-B*08:01 B2M MHCI -14833 chip0516_384695 12.88 8.44 Chip4 healthy_8 healthy _ 6746 2806 EBNA3A-193-201 EBV 0.92 1022 EBNA3A-193-201 55 2751 10 EBV EBNA3A FLRGRAYGL effector memory T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-B*08:01 B2M MHCI -14834 chip0516_223310 11.69 13.84 Chip4 healthy_6 healthy _ 6746 2045 EBV-LMP2A EBV 0.93 700 NEG 66 1979 11 EBV LMP2A CLGGLLTMV effector T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*02:01 B2M MHCI -14835 chip0516_398743 11.71 8.01 Chip4 healthy_6 healthy _ 6746 5331 EBV-LMP2A EBV 1.0 700 EBV-LMP2A 79 5252 10 EBV LMP2A CLGGLLTMV effector memory T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*02:01 B2M MHCI -14836 chip0516_518838 11.17 11.77 Chip4 healthy_6 healthy _ 6746 4067 EBV-LMP2A EBV 0.93 700 NEG 53 4014 9 EBV LMP2A CLGGLLTMV effector memory T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*02:01 B2M MHCI -14837 chip0516_295145 11.46 11.12 Chip4 healthy_6 healthy TGTGCTGTGGCCCTCTCAAGCAAATCAACCTTT CAVALSSKSTF TRAV8-3*01 TRAJ27*01 4.0 288.0 CAVALSSKSTF_ 58 4474 EBV-LMP2A EBV 0.93 700 EBV-LMP2A 47 4427 9 EBV LMP2A CLGGLLTMV effector memory T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*02:01 B2M MHCI -14838 chip0516_73707 5.89 13.57 Chip4 healthy_9 healthy _ 6746 3894 NP225-233 FLU 0.75 23 NP225-233 46 3848 7 InfluenzaA NP ILKGKFQTA transitional T cells between effector and memory populations PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-B*08:01 B2M MHCI -14839 chip0516_643886 11.41 9.77 Chip4 healthy_6 healthy TGCGCCAGCAGCGGGGACGGAATGAACACTGAAGCTTTCTTT CASSGDGMNTEAFF TRBV10-2*01 TRBJ1-1*01 46.0 2309.0 _CASSGDGMNTEAFF 131 4915 EBV-LMP2A EBV 0.96 700 EBV-LMP2A 52 4863 9 EBV LMP2A CLGGLLTMV effector memory T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*02:01 B2M MHCI -14840 chip0516_138847 6.25 14.11 Chip4 healthy_7 healthy _ 6746 4382 M1 FLU 0.93 1250 M1 63 4319 7 InfluenzaA M1 GILGFVFTL transitional T cells between effector and memory populations PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*02:01 B2M MHCI -14841 chip0516_665432 6.35 11.62 Chip4 healthy_7 healthy _ 6746 8571 M1 FLU 0.98 1250 M1 62 8509 7 InfluenzaA M1 GILGFVFTL transitional T cells between effector and memory populations PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*02:01 B2M MHCI -14842 chip0516_2129 13.35 10.38 Chip4 healthy_8 healthy TGTGTGGTGAACACCCAGTGGAGGTCGCAACTATAAACTGACATTT CVVNTQWag??gtRNYKLTF TRAV10*01 TRAJ53*01 33.0 1761.0 TGTGCCAGCAGGGAAAGGGGTCCCACCGGGGAGCTGTTTTTT CASRERGPTGELFF TRBV7-3*01 TRBJ2-2*01 37.0 1898.0 CVVNTQWag??gtRNYKLTF_CASRERGPTGELFF 1 3261 BZLF1-190-197 EBV 0.88 2156 NEG 63 3198 12 EBV BZLF1 RAKFKQLL effector T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-B*08:01 B2M MHCI -14843 chip0516_352303 12.05 14.01 Chip4 healthy_6 healthy TGTGCCAGTAAGGGTCATGTAGGGGCGGCTCAGCCCCAGCATTTT CASKGHVGAAQPQHF TRBV19*01 TRBJ1-5*01 25.0 1186.0 _CASKGHVGAAQPQHF 3 1422 EBV-BRLF1 EBV 0.88 1264 NEG 42 1380 11 EBV BRLF1 YVLDHLIVV effector T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*02:01 B2M MHCI -14844 chip0516_876194 13.19 9.39 Chip4 healthy_9 healthy _ 6746 3031 BZLF1-190-197 EBV 0.91 2156 BZLF1-190-197 54 2977 12 EBV BZLF1 RAKFKQLL effector T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-B*08:01 B2M MHCI -14845 chip0516_415000 -3.39 12.13 Chip4 healthy_9 healthy TGTGCAATGAGAGGGTTTCATTCAGGATACAGCACCCTCACCTTT CAMRGFHSGYSTLTF TRAV14/DV4*01 TRAJ11*01 14.0 739.0 CAMRGFHSGYSTLTF_ 1 3552 EBNA3A-193-201 EBV 0.54 1022 EBNA3A-193-201 41 3511 1 EBV EBNA3A FLRGRAYGL Naive T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-B*08:01 B2M MHCI -14846 chip0516_268072 -3.66 13.78 Chip4 healthy_7 healthy TGTGCCATCGGACTAGAGAGCTCCTACGAGCAGTACTTC CAIGLESSYEQYF TRBV10-3*01 TRBJ2-7*01 22.0 2224.0 _CAIGLESSYEQYF 1 3023 ZNT8-115-123 ZNT8 0.82 74 ZNT8-115-123 59 2964 1 HomoSapiens ZNT8 LLSLFSLWL Naive T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*02:01 B2M MHCI -14847 chip0516_750224 -0.37 9.03 Chip4 healthy_7 healthy TGTGCCTTACCGGGACTAGCGGGAGGCGGGTCATCAGATACGCAGTATTTT CALPGLAGGGSSDTQYF TRBV30*01 TRBJ2-3*01 21.0 1375.0 _CALPGLAGGGSSDTQYF 1 6134 PGT-178 PGT 0.95 1480 PGT-178 55 6079 4 HomoSapiens PGT LLAGIGTVPI Naive T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*02:01 B2M MHCI -14848 chip0516_683825 -3.68 9.4 Chip4 healthy_9 healthy _ 6746 4864 IAPP-LNH-9 IAPP 0.47 15 NEG 51 4813 2 HomoSapiens IAPP LNHLKATPI Naive T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-B*08:01 B2M MHCI -14849 chip0516_391087 -2.52 10.34 Chip4 healthy_7 healthy _ 6746 4687 PGT-178 PGT 0.7 1480 PGT-178 39 4648 3 HomoSapiens PGT LLAGIGTVPI Naive T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*02:01 B2M MHCI -14850 chip0516_640763 11.31 10.92 Chip4 healthy_6 healthy _ 6746 5133 EBV-LMP2A EBV 0.85 700 EBV-LMP2A 47 5086 9 EBV LMP2A CLGGLLTMV effector memory T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*02:01 B2M MHCI -14851 chip0516_107826 8.43 13.87 Chip4 healthy_6 healthy _ 6746 2185 M1 FLU 0.93 1250 NEG 53 2132 11 InfluenzaA M1 GILGFVFTL effector T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*02:01 B2M MHCI -14852 chip0516_687059 5.42 9.77 Chip4 healthy_7 healthy TGTGCCAGCAGTTATCAAGGGGGCTCCTATGGCTACACCTTC CASSYQGGSYGYTF TRBV6-5*01 TRBJ1-2*01 41.0 2744.0 _CASSYQGGSYGYTF 2 3716 EBV-LMP2-FLY EBV 0.85 355 NEG 49 3667 6 EBV LMP2 FLYALALLL central memory T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*02:01 B2M MHCI -14853 chip0516_856441 11.69 13.84 Chip4 healthy_7 healthy TGTGCTGTGAGTGAGGCCCAGGAACCTACAAATACATCTTT CAVSEAca?GTYKYIF TRAV8-4*01 TRAJ40*01 17.0 910.0 TGCGCCAGCAGTGACGACGGCATGAACACTGAAGCTTTCTTT CASSDDGMNTEAFF TRBV10-2*01 TRBJ1-1*01 32.0 1371.0 CAVSEAca?GTYKYIF_CASSDDGMNTEAFF 1 1757 EBV-LMP2A EBV 1.0 700 NEG 49 1708 11 EBV LMP2A CLGGLLTMV effector T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*02:01 B2M MHCI -14854 chip0516_850755 13.17 13.64 Chip4 healthy_6 healthy _ 6746 2284 EBV-BRLF1 EBV 0.85 1264 EBV-BRLF1 41 2243 11 EBV BRLF1 YVLDHLIVV effector T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*02:01 B2M MHCI -14855 chip0516_135343 -4.57 9.16 Chip4 healthy_7 healthy TGCGCCAGCAGTCAGACTAGCGGGACATAGAAGAGACCCAGCGCTTC CASSQTSgg?DIEETQRF TRBV4-3*01 TRBJ2-5*01 5.0 307.0 _CASSQTSgg?DIEETQRF 1 4340 MART1-ALA MART1 0.61 269 MART1-ALA 43 4297 2 HomoSapiens MART1 ALAGIGILTV Naive T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*02:01 B2M MHCI -14856 chip0516_727893 5.58 13.07 Chip4 healthy_8 healthy _ 6746 6586 NP380-388 FLU 0.66 60 NP380-388 47 6539 7 InfluenzaA NP ELRSRYWAI transitional T cells between effector and memory populations PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-B*08:01 B2M MHCI -14857 chip0516_195847 7.7 13.45 Chip4 healthy_9 healthy TGTGCCAGCAGTTCTTCGCGCCTTTTCGGGCAGTTCTTC CASSSSRLFGQFF TRBV27*01 TRBJ2-1*01 21.0 1883.0 _CASSSSRLFGQFF 1 3078 G6PC2-YVM-8 IGRP 0.73 8 NEG 44 3034 7 HomoSapiens G6PC2 YVMVTAAL transitional T cells between effector and memory populations PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-B*08:01 B2M MHCI -14858 chip0516_427944 -2.18 15.88 Chip4 healthy_9 healthy _ 6746 1522 EBNA3A-158-166 EBV 0.83 444 EBNA3A-158-166 49 1473 1 EBV EBNA3A QAKWRLQTL Naive T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-B*08:01 B2M MHCI -14859 chip0516_256016 7.16 12.8 Chip4 healthy_9 healthy TGTGCTCTGAGTGGATACCCCCAGGGAGCCCAGAAGCTGGTATTT CALSGYPQGAQKLVF TRAV19*01 TRAJ54*01 23.0 889.0 TGTGCCAGCAGCACAGGGGTAGGCAATCAGCCCCAGCATTTT CASSTGVGNQPQHF TRBV7-2*01 TRBJ1-5*01 20.0 744.0 CALSGYPQGAQKLVF_CASSTGVGNQPQHF 1 4088 GAD2-MAA-10 GAD65 0.43 6 NEG 53 4035 7 HomoSapiens GAD2 MAALPRLIAF transitional T cells between effector and memory populations PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-B*08:01 B2M MHCI -14860 chip0516_781535 6.77 12.4 Chip4 healthy_8 healthy _ 6746 5593 NP30-38 FLU 0.74 72 NP30-38 58 5535 7 InfluenzaA NP RPIIRPATL transitional T cells between effector and memory populations PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-B*08:01 B2M MHCI -14861 chip0516_839304 -0.06 9.14 Chip4 healthy_8 healthy _ 6746 6204 EBNA3A-193-201 EBV 0.59 1022 NEG 60 6144 4 EBV EBNA3A FLRGRAYGL Naive T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-B*08:01 B2M MHCI -14862 chip0516_190528 11.0 8.14 Chip4 healthy_6 healthy TGTTCCCAAGGTCCCAGCGGCGGTGCTGACGGACTGACCTTA CSQGPSGGADGLTL TRAV12-2*01 TRAJ45*01 4.0 168.0 TGCGCCAGCAGCGGGGACGGAATGAACACTGAAGCTTTCTTT CASSGDGMNTEAFF TRBV10-2*01 TRBJ1-1*01 11.0 777.0 CSQGPSGGADGLTL_CASSGDGMNTEAFF 1 6808 EBV-LMP2A EBV 0.87 700 EBV-LMP2A 51 6757 10 EBV LMP2A CLGGLLTMV effector memory T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*02:01 B2M MHCI -14863 chip0516_195352 -2.29 9.05 Chip4 healthy_6 healthy TGTGCCAGCAGCCAAGACAGTCTAGCAGTTAGCACAGATACGCAGTATTTT CASSQDSLAVSTDTQYF TRBV14*01 TRBJ2-3*01 16.0 648.0 _CASSQDSLAVSTDTQYF 1 6419 PGT-178 PGT 0.81 1480 PGT-178 43 6376 3 HomoSapiens PGT LLAGIGTVPI Naive T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*02:01 B2M MHCI -14864 chip0516_203937 6.85 14.09 Chip4 healthy_6 healthy TGTGCCAGCAGTTACACCGCCCAGCCAGATACTAGCAATCAGCCCCAGCATTTT CASSYTAQPDTSNQPQHF TRBV6-2*01,TRBV6-3*01 TRBJ1-5*01 3.0 412.0 _CASSYTAQPDTSNQPQHF 1 3432 M1 FLU 0.97 1250 M1 65 3367 7 InfluenzaA M1 GILGFVFTL transitional T cells between effector and memory populations PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*02:01 B2M MHCI -14865 chip0516_155278 12.0 7.73 Chip4 healthy_6 healthy TGCGCCAGCAGCGGGGACGGAATGAACACTGGAGCTTTCTTT CASSGDGMNTGAFF TRBV10-2*01 TRBJ1-1*01 25.0 1343.0 _CASSGDGMNTGAFF 1 5316 EBV-LMP2A EBV 0.95 700 EBV-LMP2A 71 5245 10 EBV LMP2A CLGGLLTMV effector memory T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*02:01 B2M MHCI -14866 chip0516_81520 12.02 13.4 Chip4 healthy_9 healthy _ 6746 1569 BZLF1-190-197 EBV 0.89 2156 BZLF1-190-197 42 1527 11 EBV BZLF1 RAKFKQLL effector T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-B*08:01 B2M MHCI -14867 chip0516_638516 -0.69 10.43 Chip4 healthy_6 healthy TGTGCAATGAGCGGCGGCCAGGCAGGAACTGCTCTGATCTTT CAMSGGQAGTALIF TRAV12-3*01 TRAJ15*01 30.0 2156.0 CAMSGGQAGTALIF_ 1 5699 EBV-LMP1-1 EBV 0.91 237 NEG 63 5636 3 EBV LMP1 YLLEMLWRL Naive T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*02:01 B2M MHCI -14868 chip0516_422640 11.73 8.1 Chip4 healthy_8 healthy TGCATCCTGCCCCTTGCTGGTGGTACTAGCTATGGAAAGCTGACATTT CILPLAGGTSYGKLTF TRAV26-2*01 TRAJ52*01 9.0 370.0 TGTGCCAGCAGCTTAGGACAGGCCTACGAGCAGTACTTC CASSLGQAYEQYF TRBV7-8*01 TRBJ2-7*01 33.0 2333.0 CILPLAGGTSYGKLTF_CASSLGQAYEQYF 308 4523 EBNA3A-193-201 EBV 0.93 1022 EBNA3A-193-201 63 4460 10 EBV EBNA3A FLRGRAYGL effector memory T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-B*08:01 B2M MHCI -14869 chip0516_493408 12.41 13.35 Chip4 healthy_8 healthy TGCATCCTGCCCCTTGCTGGTGGTACTAGCTATGGAAAGCTGACATTT CILPLAGGTSYGKLTF TRAV26-2*01 TRAJ52*01 1.0 31.0 CILPLAGGTSYGKLTF_ 55 1997 EBNA3A-193-201 EBV 0.8 1022 EBNA3A-193-201 64 1933 11 EBV EBNA3A FLRGRAYGL effector T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-B*08:01 B2M MHCI -14870 chip0516_770198 11.85 13.68 Chip4 healthy_8 healthy _ 6746 1707 EBNA3A-193-201 EBV 0.7 1022 NEG 58 1649 11 EBV EBNA3A FLRGRAYGL effector T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-B*08:01 B2M MHCI -14871 chip0516_763746 8.31 13.19 Chip4 healthy_6 healthy TGTGCCAGCAGCCCTCCCTACAATGAGCAGTTCTTC CASSPPYNEQFF TRBV7-8*01 TRBJ2-1*01 9.0 699.0 _CASSPPYNEQFF 4 2920 ZNT8-115-123 ZNT8 0.79 74 NEG 41 2879 7 HomoSapiens ZNT8 LLSLFSLWL transitional T cells between effector and memory populations PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*02:01 B2M MHCI -14872 chip0516_144324 12.09 8.62 Chip4 healthy_6 healthy _ 6746 3773 EBV-BLMF1 EBV 0.65 2531 NEG 51 3722 10 EBV BLMF1 GLCTLVAML effector memory T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*02:01 B2M MHCI -14873 chip0516_547293 12.69 13.34 Chip4 healthy_8 healthy _ 6746 2314 EBNA3A-193-201 EBV 0.98 1022 EBNA3A-193-201 59 2255 11 EBV EBNA3A FLRGRAYGL effector T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-B*08:01 B2M MHCI -14874 chip0516_550725 15.0 12.98 Chip4 healthy_8 healthy _ 6746 1784 EBNA3A-193-201 EBV 0.7 1022 NEG 48 1736 12 EBV EBNA3A FLRGRAYGL effector T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-B*08:01 B2M MHCI -14875 chip0516_335029 -0.12 8.71 Chip4 healthy_7 healthy _ 6746 4298 IGRP-228-236 IGRP 1.0 16 IGRP-228-236 40 4258 4 HomoSapiens IGRP LNIDLLWSV Naive T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*02:01 B2M MHCI -14876 chip0516_343301 16.13 10.25 Chip4 healthy_8 healthy TGTGCCGTGAAAGCCCCGTACAGCAGTGCTTCCAAGATAATCTTT CAVKAPYSSASKIIF TRAV12-2*01 TRAJ3*01 11.0 645.0 CAVKAPYSSASKIIF_ 1 3440 INS-MAL-8 INS 0.62 38 NEG 50 3390 12 HomoSapiens INS MALWMRLL effector T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-B*08:01 B2M MHCI -14877 chip0516_755248 11.98 13.89 Chip4 healthy_8 healthy TGCATCCTGCCCCTTGCTGGTGGTACTAGCTATGGAAAGCTGACATTT CILPLAGGTSYGKLTF TRAV26-2*01 TRAJ52*01 56.0 3470.0 CILPLAGGTSYGKLTF_ 55 1450 EBNA3A-193-201 EBV 0.9 1022 EBNA3A-193-201 61 1389 11 EBV EBNA3A FLRGRAYGL effector T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-B*08:01 B2M MHCI -14878 chip0516_531256 10.35 13.85 Chip4 healthy_8 healthy _ 6746 2175 EBNA3A-193-201 EBV 0.95 1022 EBNA3A-193-201 55 2120 11 EBV EBNA3A FLRGRAYGL effector T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-B*08:01 B2M MHCI -14879 chip0516_755079 11.85 7.22 Chip4 healthy_8 healthy TGTGCAATGAGGTGCCAGACTCATGTTT CAMRtg??ccRLMF TRAV14/DV4*01 TRAJ31*01 1.0 38.0 CAMRtg??ccRLMF_ 1 4785 EBNA3A-193-201 EBV 0.9 1022 EBNA3A-193-201 44 4741 10 EBV EBNA3A FLRGRAYGL effector memory T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-B*08:01 B2M MHCI -14880 chip0516_862529 11.76 7.92 Chip4 healthy_6 healthy _ 6746 4849 EBV-LMP2A EBV 0.8 700 EBV-LMP2A 53 4796 10 EBV LMP2A CLGGLLTMV effector memory T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*02:01 B2M MHCI -14881 chip0516_145611 11.06 10.07 Chip4 healthy_6 healthy _ 6746 4995 EBV-LMP2A EBV 0.98 700 EBV-LMP2A 53 4942 9 EBV LMP2A CLGGLLTMV effector memory T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*02:01 B2M MHCI -14882 chip0516_337549 11.77 8.88 Chip4 healthy_7 healthy _ 6746 3771 EBV-LMP2-FLY EBV 0.95 355 EBV-LMP2-FLY 51 3720 10 EBV LMP2 FLYALALLL effector memory T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*02:01 B2M MHCI -14883 chip0516_183668 10.58 11.16 Chip4 healthy_6 healthy _ 6746 5243 EBV-LMP2A EBV 0.92 700 EBV-LMP2A 48 5195 9 EBV LMP2A CLGGLLTMV effector memory T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*02:01 B2M MHCI -14884 chip0516_132529 11.2 11.68 Chip4 healthy_6 healthy _ 6746 3828 EBV-LMP2A EBV 0.93 700 NEG 50 3778 9 EBV LMP2A CLGGLLTMV effector memory T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*02:01 B2M MHCI -14885 chip0516_539013 13.36 13.63 Chip4 healthy_8 healthy TGTGCCAGCAGCTTAGGCCAGGCCTACGAGCAGTACTTC CASSLGQAYEQYF TRBV7-8*01 TRBJ2-7*01 32.0 3043.0 _CASSLGQAYEQYF 175 1630 EBNA3A-193-201 EBV 0.92 1022 EBNA3A-193-201 47 1583 11 EBV EBNA3A FLRGRAYGL effector T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-B*08:01 B2M MHCI -14886 chip0516_184733 10.64 10.32 Chip4 healthy_6 healthy TGCGCCAGCAGCGGGGACGGAATGAACACTGAAGCTTTCTTT CASSGDGMNTEAFF TRBV10-2*01 TRBJ1-1*01 6.0 313.0 _CASSGDGMNTEAFF 131 6375 EBV-LMP2A EBV 0.83 700 EBV-LMP2A 40 6335 9 EBV LMP2A CLGGLLTMV effector memory T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*02:01 B2M MHCI -14887 chip0516_278658 -2.25 14.09 Chip4 healthy_8 healthy TGTGTGGTGAGCGGGGTCCCGAAAAACAATGACATGCGCTTT CVVSGVPKNNDMRF TRAV10*01 TRAJ43*01 101.0 4115.0 CVVSGVPKNNDMRF_ 1 2766 GAD2-RMM-9 GAD65 0.89 9 NEG 40 2726 1 HomoSapiens GAD2 RMMEYGTTM Naive T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-B*08:01 B2M MHCI -14888 chip0516_881532 -4.18 11.99 Chip4 healthy_8 healthy TGTGCAATGAAGGACCGGTAACCAGTTCTATTCT CAMKDcg??gtNQFYS TRAV12-3*01 TRAJ49*01 1.0 54.0 TGTGCCAGCAGCTTAGCCCTACAGGGCACGAGCAATGAGCAGTTCTTC CASSLALQGTSNEQFF TRBV7-2*01 TRBJ2-1*01 14.0 757.0 CAMKDcg??gtNQFYS_CASSLALQGTSNEQFF 1 5472 G6PC2-NLI-8 IGRP 0.89 32 G6PC2-NLI-8 32 5440 1 HomoSapiens G6PC2 NLIFKWIL Naive T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-B*08:01 B2M MHCI -14889 chip0516_9135 10.96 12.24 Chip4 healthy_6 healthy _ 6746 4816 EBV-LMP2A EBV 0.42 700 EBV-LMP2A 46 4770 11 EBV LMP2A CLGGLLTMV effector T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*02:01 B2M MHCI -14890 chip0516_132589 9.22 13.82 Chip4 healthy_10 healthy TGTGCCATCAGTGAGTCGATGGACGGGAATGAGCAGTTCTTC CAISESMDGNEQFF TRBV10-3*01 TRBJ2-1*01 4.0 274.0 _CAISESMDGNEQFF 1 2112 NP44-52 FLU 0.85 474 NP44-52 43 2069 11 InfluenzaA NP CTELKLSDY effector T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*01:01 B2M MHCI -14891 chip0516_565249 8.49 13.7 Chip4 healthy_6 healthy TGTGCCATCAGTGAGCCGCTACTAGGAGGCAAGACAAACACCGGGGAGCTGTTTTTT CAISEPLLGGKTNTGELFF TRBV10-3*01 TRBJ2-2*01 20.0 866.0 _CAISEPLLGGKTNTGELFF 1 3711 ROTA-VP6 ROTA 0.82 47 NEG 55 3656 7 RotavirusA VP6 TLLANVTAV transitional T cells between effector and memory populations PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*02:01 B2M MHCI -14892 chip0516_422695 11.78 13.2 Chip4 healthy_6 healthy _ 6746 2436 EBV-LMP2A EBV 0.95 700 EBV-LMP2A 43 2393 11 EBV LMP2A CLGGLLTMV effector T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*02:01 B2M MHCI -14893 chip0516_506982 -3.12 13.09 Chip4 healthy_6 healthy TGCAGTGCTGGGGGACTAGCGGGAGGTCTGGATGAGCAGTTCTTC CSAGGLAGGLDEQFF TRBV20-1*01 TRBJ2-1*01 10.0 655.0 _CSAGGLAGGLDEQFF 1 3779 PGT-178 PGT 0.76 1480 NEG 46 3733 1 HomoSapiens PGT LLAGIGTVPI Naive T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*02:01 B2M MHCI -14894 chip0516_420265 11.72 8.16 Chip4 healthy_8 healthy _ 6746 4823 EBNA3A-193-201 EBV 0.77 1022 EBNA3A-193-201 47 4776 10 EBV EBNA3A FLRGRAYGL effector memory T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-B*08:01 B2M MHCI -14895 chip0516_416471 -3.43 11.61 Chip4 healthy_9 healthy _ 6746 4506 NP30-38 FLU 0.79 72 NP30-38 46 4460 1 InfluenzaA NP RPIIRPATL Naive T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-B*08:01 B2M MHCI -14896 chip0516_170903 11.94 7.3 Chip4 healthy_8 healthy TGCATCCTGCCCCTTGCTGGTGGTACTAGCTATGGAAAGCTGACATTT CILPLAGGTSYGKLTF TRAV26-2*01 TRAJ52*01 24.0 1515.0 TGTGCCAGCAGCTTAGGACAGGCCTACGAGCAGTACTTC CASSLGQAYEQYF TRBV7-8*01 TRBJ2-7*01 12.0 983.0 CILPLAGGTSYGKLTF_CASSLGQAYEQYF 308 4858 EBNA3A-193-201 EBV 0.68 1022 EBNA3A-193-201 50 4808 10 EBV EBNA3A FLRGRAYGL effector memory T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-B*08:01 B2M MHCI -14897 chip0516_782103 12.2 8.69 Chip4 healthy_8 healthy TGTGCCAGCAGTTTAATGGGGACAGGGGGCTTGAGTGAAAAACTGTCTTTT CASSLMGTGGLSEKLSF TRBV28*01 TRBJ1-4*01 4.0 77.0 _CASSLMGTGGLSEKLSF 1 4023 EBNA3A-158-166 EBV 0.75 444 NEG 64 3959 10 EBV EBNA3A QAKWRLQTL effector memory T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-B*08:01 B2M MHCI -14898 chip0516_668645 11.43 13.42 Chip4 healthy_9 healthy _ 6746 2995 ZNT8-VTD-9 ZNT8 0.92 65 ZNT8-VTD-9 44 2951 11 HomoSapiens ZNT8 VTDAAHLLI effector T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*01:01 B2M MHCI -14899 chip0516_524870 -2.48 15.29 Chip4 healthy_7 healthy _ 6746 2029 PGT-178 PGT 0.71 1480 NEG 51 1978 1 HomoSapiens PGT LLAGIGTVPI Naive T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*02:01 B2M MHCI -14900 chip0516_186493 8.07 11.94 Chip4 healthy_6 healthy TGCAGCGTTGGGACAGGGGGAACTAATGAAAAACTGTTTTTT CSVGTGGTNEKLFF TRBV29-1*01 TRBJ1-4*01 62.0 4413.0 _CSVGTGGTNEKLFF 638 4489 EBV-BLMF1 EBV 0.95 2531 EBV-BLMF1 66 4423 7 EBV BLMF1 GLCTLVAML transitional T cells between effector and memory populations PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*02:01 B2M MHCI -14901 chip0516_477918 11.67 13.1 Chip4 healthy_6 healthy _ 6746 3003 EBV-LMP2A EBV 0.9 700 EBV-LMP2A 44 2959 11 EBV LMP2A CLGGLLTMV effector T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*02:01 B2M MHCI -14902 chip0516_250423 -2.94 12.0 Chip4 healthy_7 healthy TGTGCCAGCAGCTTAGCGCGCGGGGATGGCTACACCTTC CASSLARGDGYTF TRBV7-2*01 TRBJ1-2*01 14.0 773.0 _CASSLARGDGYTF 1 4057 PGT-178 PGT 0.57 1480 NEG 44 4013 1 HomoSapiens PGT LLAGIGTVPI Naive T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*02:01 B2M MHCI -14903 chip0516_437639 8.63 11.47 Chip4 healthy_8 healthy TGTGCCGTGAAAGGGGACACCAATGCAGGCAAATCAACCTTT CAVKGDTNAGKSTF TRAV12-2*01 TRAJ27*01 1.0 73.0 CAVKGDTNAGKSTF_ 7 5337 EBNA3A-193-201 EBV 0.92 1022 EBNA3A-193-201 44 5293 7 EBV EBNA3A FLRGRAYGL transitional T cells between effector and memory populations PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-B*08:01 B2M MHCI -14904 chip0516_293073 -4.56 10.83 Chip4 healthy_7 healthy _ 6746 3998 MART1-ALA MART1 0.7 269 NEG 45 3953 2 HomoSapiens MART1 ALAGIGILTV Naive T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*02:01 B2M MHCI -14905 chip0516_356805 -2.11 15.99 Chip4 healthy_7 healthy TGTGCTGACCGTACCTCTACCGGGTTAATAGGAAACTGACATTT CADRTSTg?gVNRKLTF TRAV35*01 TRAJ56*01 1.0 15.0 CADRTSTg?gVNRKLTF_ 1 1387 PTPRN-180-188 PTPRN 1.0 18 NEG 37 1350 1 HomoSapiens PTPRN LLPPLLEHL Naive T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*02:01 B2M MHCI -14906 chip0516_478003 11.45 12.54 Chip4 healthy_6 healthy _ 6746 3211 EBV-LMP2A EBV 1.0 700 EBV-LMP2A 41 3170 11 EBV LMP2A CLGGLLTMV effector T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*02:01 B2M MHCI -14907 chip0516_191920 11.19 12.49 Chip4 healthy_6 healthy _ 6746 3720 EBV-LMP2A EBV 1.0 700 NEG 46 3674 11 EBV LMP2A CLGGLLTMV effector T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*02:01 B2M MHCI -14908 chip0516_385926 -2.05 16.06 Chip4 healthy_8 healthy _ 6746 746 NP44-52 FLU 1.0 474 NEG 30 716 1 InfluenzaA NP CTELKLSDY Naive T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*01:01 B2M MHCI -14909 chip0516_662273 -3.51 13.39 Chip4 healthy_9 healthy TGCATCCTGAGGTACAATGCAGGCAACATGCTCACCTTT CILRYNAGNMLTF TRAV26-2*01 TRAJ39*01 4.0 182.0 CILRYNAGNMLTF_ 1 3102 NP30-38 FLU 0.53 72 NEG 53 3049 1 InfluenzaA NP RPIIRPATL Naive T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-B*08:01 B2M MHCI -14910 chip0516_359225 5.73 12.49 Chip4 healthy_6 healthy CTGTGCCGGCCAGGGATTTACTGGGGTGTGTGTAGCTTTCTTT LCRPGIY??tGVCVAFF TRBV6-1*01 TRBJ1-1*01 2.0 99.0 _LCRPGIY??tGVCVAFF 1 6067 GAD65-114-122 GAD65 0.91 63 GAD65-114-122 52 6015 7 HomoSapiens GAD65 VMNILLQYV transitional T cells between effector and memory populations PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*02:01 B2M MHCI -14911 chip0516_172013 -3.79 12.73 Chip4 healthy_6 healthy TGTGCTGTTCCTTACTTGGGGGATAGCAACTATCAGTTAATCTGG CAVPYLGDSNYQLIW TRAV1-2*01 TRAJ33*01 1.0 85.0 CAVPYLGDSNYQLIW_ 1 3889 PGT-178 PGT 0.71 1480 PGT-178 35 3854 1 HomoSapiens PGT LLAGIGTVPI Naive T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*02:01 B2M MHCI -14912 chip0516_645260 10.98 9.6 Chip4 healthy_6 healthy _ 6746 6956 EBV-LMP2A EBV 0.95 700 EBV-LMP2A 51 6905 9 EBV LMP2A CLGGLLTMV effector memory T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*02:01 B2M MHCI -14913 chip0516_840459 12.44 13.22 Chip4 healthy_6 healthy TGTGCTGTTCTAATGGATAGCAACTATCAGTTAATCTGG CAVLMDSNYQLIW TRAV12-3*01 TRAJ33*01 20.0 1536.0 TGCGCCAGCAGCGGGGACGGAATGAACACTGAAGCTTTCTTT CASSGDGMNTEAFF TRBV10-2*01 TRBJ1-1*01 27.0 1651.0 CAVLMDSNYQLIW_CASSGDGMNTEAFF 20 2781 EBV-LMP2A EBV 0.85 700 NEG 44 2737 11 EBV LMP2A CLGGLLTMV effector T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*02:01 B2M MHCI -14914 chip0516_214123 12.94 8.63 Chip4 healthy_6 healthy _ 6746 3316 EBV-BRLF1 EBV 0.9 1264 EBV-BRLF1 65 3251 10 EBV BRLF1 YVLDHLIVV effector memory T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*02:01 B2M MHCI -14915 chip0516_697537 -0.84 8.88 Chip4 healthy_9 healthy TGTGCCAGCAGCCAAGTGCGCTACGGCACAGATACGCAGTATTTT CASSQVRYGTDTQYF TRBV3-1*01 TRBJ2-3*01 18.0 1522.0 _CASSQVRYGTDTQYF 1 5590 NP140-148 FLU 0.41 102 NEG 43 5547 4 InfluenzaA NP HSNLNDATY Naive T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*01:01 B2M MHCI -14916 chip0516_198950 11.05 7.63 Chip4 healthy_6 healthy _ 6746 5334 EBV-LMP2A EBV 1.0 700 EBV-LMP2A 45 5289 10 EBV LMP2A CLGGLLTMV effector memory T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*02:01 B2M MHCI -14917 chip0516_278726 12.01 14.03 Chip4 healthy_8 healthy TGCATCCTGCCCCTTGCTGGTGGTACTAGCTATGGAAAGCTGACATTT CILPLAGGTSYGKLTF TRAV26-2*01 TRAJ52*01 1.0 154.0 CILPLAGGTSYGKLTF_ 55 1195 EBNA3A-193-201 EBV 0.88 1022 EBNA3A-193-201 46 1149 11 EBV EBNA3A FLRGRAYGL effector T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-B*08:01 B2M MHCI -14918 chip0516_884142 5.14 9.55 Chip4 healthy_10 healthy TGCGCCAGCAGCTTGACTAGCGGGAACTACAATGAGCAGTTTTTC CASSLTSGNYNEQFF TRBV5-1*01 TRBJ2-1*01 24.0 2003.0 _CASSLTSGNYNEQFF 1 4597 gp160-586-593 HIV 1.0 30 NEG 27 4570 6 HIV-1 gp160 YLKDQQLL central memory T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-B*08:01 B2M MHCI -14919 chip0516_627764 12.39 9.24 Chip4 healthy_6 healthy _ 6746 3983 EBV-BRLF1 EBV 0.94 1264 EBV-BRLF1 51 3932 10 EBV BRLF1 YVLDHLIVV effector memory T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*02:01 B2M MHCI -14920 chip0516_146848 -4.34 10.35 Chip4 healthy_9 healthy _ 6746 4580 ZNT8-YAK-9 ZNT8 0.41 59 NEG 33 4547 2 HomoSapiens ZNT8 YAKWKLCSA Naive T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-B*08:01 B2M MHCI -14921 chip0516_312825 -4.02 7.86 Chip4 healthy_8 healthy _ 6746 6912 Nef13-20 HIV 0.46 19 Nef13-20 39 6873 2 HIV-1 Nef WPTVRERM Naive T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-B*08:01 B2M MHCI -14922 chip0516_814481 -2.06 16.05 Chip4 healthy_7 healthy _ 6746 1120 MART1-ALA MART1 0.82 269 NEG 38 1082 1 HomoSapiens MART1 ALAGIGILTV Naive T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*02:01 B2M MHCI -14923 chip0516_570519 -2.99 9.31 Chip4 healthy_7 healthy _ 6746 5577 ZNT8-16-24 ZNT8 0.85 39 NEG 41 5536 2 HomoSapiens ZNT8 KMYAFTLES Naive T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*02:01 B2M MHCI -14924 chip0516_717677 13.71 7.1 Chip4 tet_neg _ 6746 7144 EBV-LMP2A EBV 0.77 700 EBV-LMP2A 40 7104 10 EBV LMP2A CLGGLLTMV effector memory T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*02:01 B2M MHCI -14925 chip0516_628153 12.55 7.57 Chip4 healthy_10 healthy _ 6746 4125 BZLF1-190-197 EBV 0.73 2156 BZLF1-190-197 45 4080 10 EBV BZLF1 RAKFKQLL effector memory T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-B*08:01 B2M MHCI -14926 chip0516_455584 5.45 11.9 Chip4 healthy_8 healthy TGTGCTGTGAGTGAGAGAGCAATATGGAAACAAACTGGTCTTT CAVSERA??aYGNKLVF TRAV8-4*01 TRAJ47*01 34.0 1996.0 CAVSERA??aYGNKLVF_ 1 5306 BZLF1-190-197 EBV 0.83 2156 BZLF1-190-197 34 5272 7 EBV BZLF1 RAKFKQLL transitional T cells between effector and memory populations PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-B*08:01 B2M MHCI -14927 chip0516_174534 13.47 8.28 Chip4 healthy_6 healthy _ 6746 3456 EBV-LMP2A EBV 0.89 700 EBV-LMP2A 41 3415 10 EBV LMP2A CLGGLLTMV effector memory T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*02:01 B2M MHCI -14928 chip0516_111927 -4.3 8.96 Chip4 healthy_10 healthy _ 6746 6417 LMP2A-CPL EBV 0.88 44 NEG 45 6372 2 EBV LMP2A CPLSKILL Naive T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-B*08:01 B2M MHCI -14929 chip0516_541188 11.84 13.8 Chip4 healthy_6 healthy _ 6746 1681 EBV-LMP2A EBV 1.0 700 NEG 41 1640 11 EBV LMP2A CLGGLLTMV effector T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*02:01 B2M MHCI -14930 chip0516_105 11.4 11.67 Chip4 healthy_6 healthy _ 6746 4024 EBV-LMP2A EBV 1.0 700 NEG 37 3987 9 EBV LMP2A CLGGLLTMV effector memory T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*02:01 B2M MHCI -14931 chip0516_717608 12.27 13.49 Chip4 healthy_6 healthy TGCGCCAGCAGCGGGGACGGAATGAACACTGAAGCTTTCTTT CASSGDGMNTEAFF TRBV10-2*01 TRBJ1-1*01 28.0 1489.0 _CASSGDGMNTEAFF 131 2807 EBV-LMP2A EBV 1.0 700 EBV-LMP2A 33 2774 11 EBV LMP2A CLGGLLTMV effector T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*02:01 B2M MHCI -14932 chip0516_152926 8.15 11.91 Chip4 healthy_8 healthy _ 6746 3596 EBNA3A-158-166 EBV 0.74 444 EBNA3A-158-166 28 3568 7 EBV EBNA3A QAKWRLQTL transitional T cells between effector and memory populations PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-B*08:01 B2M MHCI -14933 chip0516_377725 8.06 13.81 Chip4 healthy_7 healthy _ 6746 2961 M1 FLU 0.88 1250 NEG 34 2927 7 InfluenzaA M1 GILGFVFTL transitional T cells between effector and memory populations PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*02:01 B2M MHCI -14934 chip0516_110135 11.13 12.52 Chip4 healthy_6 healthy TGTGCTGTGGCCCTCTCAAGCAAATCAACCTTT CAVALSSKSTF TRAV8-3*01 TRAJ27*01 2.0 344.0 TGCGCCAGCAGCGGGGACGGAATGAACACTGAAGCTTTCTTT CASSGDGMNTEAFF TRBV10-2*01 TRBJ1-1*01 11.0 700.0 CAVALSSKSTF_CASSGDGMNTEAFF 50 3480 EBV-LMP2A EBV 0.89 700 EBV-LMP2A 37 3443 11 EBV LMP2A CLGGLLTMV effector T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*02:01 B2M MHCI -14935 chip0516_22602 13.98 8.16 Chip4 healthy_9 healthy _ 6746 2508 BZLF1-190-197 EBV 0.72 2156 BZLF1-190-197 34 2474 10 EBV BZLF1 RAKFKQLL effector memory T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-B*08:01 B2M MHCI -14936 chip0516_518881 11.39 12.51 Chip4 healthy_6 healthy _ 6746 3208 EBV-LMP2A EBV 1.0 700 NEG 33 3175 11 EBV LMP2A CLGGLLTMV effector T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*02:01 B2M MHCI -14937 chip0516_715945 -3.71 12.74 Chip4 healthy_6 healthy TGTGCAATGAGCTTATCTAACTTTGGAAATGAGAAATTAACCTTT CAMSLSNFGNEKLTF TRAV12-3*01 TRAJ48*01 10.0 602.0 CAMSLSNFGNEKLTF_ 16 3578 PGT-178 PGT 1.0 1480 PGT-178 40 3538 1 HomoSapiens PGT LLAGIGTVPI Naive T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*02:01 B2M MHCI -14938 chip0516_232807 -3.71 11.08 Chip4 healthy_6 healthy TGTGCCTTGGACACGGGCAGGAGCGCACTTACTTTT CALDTGRSALTF TRAV12-2*01 TRAJ5*01 1.0 36.0 CALDTGRSALTF_ 1 4064 PGT-178 PGT 0.91 1480 PGT-178 32 4032 1 HomoSapiens PGT LLAGIGTVPI Naive T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*02:01 B2M MHCI -14939 chip0516_210473 -3.34 13.54 Chip4 healthy_8 healthy _ 6746 3538 INS-MAL-8 INS 0.53 38 NEG 28 3510 1 HomoSapiens INS MALWMRLL Naive T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-B*08:01 B2M MHCI -14940 chip0516_131969 -4.05 7.95 Chip4 healthy_8 healthy TGCAGCGTTAGGGGGACCGACGTAGGGTGGACTGAAGCTTTCTTT CSVRGTDVGWTEAFF TRBV29-1*01 TRBJ1-1*01 58.0 3256.0 _CSVRGTDVGWTEAFF 1 5459 ZNT8-YAK-9 ZNT8 0.81 59 ZNT8-YAK-9 34 5425 2 HomoSapiens ZNT8 YAKWKLCSA Naive T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-B*08:01 B2M MHCI -14941 chip0516_456331 11.68 13.06 Chip4 healthy_6 healthy _ 6746 2988 EBV-LMP2A EBV 1.0 700 EBV-LMP2A 39 2949 11 EBV LMP2A CLGGLLTMV effector T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*02:01 B2M MHCI -14942 chip0516_506176 11.8 14.0 Chip4 healthy_8 healthy TGCATCCTGCCCCTTGCTGGTGGTACTAGCTATGGAAAGCTGACATTT CILPLAGGTSYGKLTF TRAV26-2*01 TRAJ52*01 22.0 1919.0 TGTGCCAGCAGCTTAGGACAGGCCTACGAGCAGTACTTC CASSLGQAYEQYF TRBV7-8*01 TRBJ2-7*01 7.0 721.0 CILPLAGGTSYGKLTF_CASSLGQAYEQYF 308 1357 EBNA3A-193-201 EBV 0.67 1022 NEG 32 1325 11 EBV EBNA3A FLRGRAYGL effector T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-B*08:01 B2M MHCI -14943 chip0516_92022 10.43 9.09 Chip4 healthy_8 healthy TGTGCCAGCAGCACCCAGACAGCGCCTGATGATACGCAGTATTTT CASSTQTAPDDTQYF TRBV7-9*01 TRBJ2-3*01 1.0 57.0 _CASSTQTAPDDTQYF 5 4783 BZLF1-190-197 EBV 0.88 2156 BZLF1-190-197 27 4756 10 EBV BZLF1 RAKFKQLL effector memory T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-B*08:01 B2M MHCI -14944 chip0516_442359 11.74 13.96 Chip4 healthy_8 healthy TGTGCCGTGAAAGGGGACACCAATGCAGGCAAATCAACCTTT CAVKGDTNAGKSTF TRAV12-2*01 TRAJ27*01 27.0 1982.0 CAVKGDTNAGKSTF_ 7 2502 EBNA3A-193-201 EBV 0.95 1022 EBNA3A-193-201 30 2472 11 EBV EBNA3A FLRGRAYGL effector T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-B*08:01 B2M MHCI -14945 chip0516_425645 11.84 8.18 Chip4 healthy_6 healthy _ 6746 4156 EBV-LMP2A EBV 1.0 700 EBV-LMP2A 28 4128 10 EBV LMP2A CLGGLLTMV effector memory T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*02:01 B2M MHCI -14946 chip0516_442820 -3.76 12.02 Chip4 healthy_8 healthy TGTGCTCTGAGTGCTTTTACTACCGGCACTGCCAGTAAACTCACCTTT CALSAFTTGTASKLTF TRAV19*01 TRAJ44*01 41.0 2032.0 CALSAFTTGTASKLTF_ 1 5050 G6PC2-LTS-10 IGRP 0.54 59 G6PC2-LTS-10 27 5023 1 HomoSapiens G6PC2 LTSLTILQLY Naive T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*01:01 B2M MHCI -14947 chip0516_182214 9.36 9.33 Chip4 healthy_9 healthy _ 6746 5141 IAPP-MGI-9 IAPP 0.45 5 IAPP-MGI-9 22 5119 8 HomoSapiens IAPP MGILKLQVF effector memory T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-B*08:01 B2M MHCI -14948 chip0516_2176 5.09 9.46 Chip4 healthy_8 healthy _ 6746 4776 EBNA3A-193-201 EBV 0.93 1022 EBNA3A-193-201 22 4754 6 EBV EBNA3A FLRGRAYGL central memory T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-B*08:01 B2M MHCI -14949 chip0516_761395 12.04 13.85 Chip4 healthy_8 healthy TGCATCCTGCCCCTTGCTGGTGGTACTAGCTATGGAAAGCTGACATTT CILPLAGGTSYGKLTF TRAV26-2*01 TRAJ52*01 13.0 587.0 CILPLAGGTSYGKLTF_ 55 1188 EBNA3A-193-201 EBV 0.7 1022 NEG 29 1159 11 EBV EBNA3A FLRGRAYGL effector T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-B*08:01 B2M MHCI -14950 chip0516_77226 11.69 13.92 Chip4 healthy_6 healthy TGTGCTACGGAAGGGGATTCAGGATACAGCACCCTCACCTTT CATEGDSGYSTLTF TRAV17*01 TRAJ11*01 1.0 62.0 CATEGDSGYSTLTF_ 12 2202 EBV-LMP2-FLY EBV 0.9 355 NEG 32 2170 11 EBV LMP2 FLYALALLL effector T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*02:01 B2M MHCI -14951 chip0516_804618 5.01 9.7 Chip4 healthy_6 healthy _ 6746 3887 EBV-LMP2-FLY EBV 1.0 355 EBV-LMP2-FLY 20 3867 6 EBV LMP2 FLYALALLL central memory T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*02:01 B2M MHCI -14952 chip0516_484047 11.94 7.47 Chip4 healthy_6 healthy _ 6746 6196 EBV-LMP2A EBV 0.98 700 EBV-LMP2A 21 6175 10 EBV LMP2A CLGGLLTMV effector memory T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*02:01 B2M MHCI -14953 chip0516_658332 12.37 7.86 Chip4 healthy_7 healthy _ 6746 4273 EBV-LMP2-FLY EBV 0.87 355 NEG 21 4252 10 EBV LMP2 FLYALALLL effector memory T cells PBMC tetramer-sort yes amplicon-seq PMID:34811538 HLA-A*02:01 B2M MHCI +chunk.id cdr3.alpha v.alpha j.alpha cdr3.beta v.beta d.beta j.beta species mhc.a mhc.b mhc.class antigen.epitope antigen.gene antigen.species reference.id method.identification method.frequency method.singlecell method.sequencing method.verification meta.study.id meta.cell.subset meta.subset.frequency meta.subject.cohort meta.subject.id meta.replica.id meta.clone.id meta.epitope.id meta.tissue meta.donor.MHC meta.donor.MHC.method meta.structure.id +1 CAMEGNSGYSTLTF TRAV17*01 TRAJ11*01 CASSRQGGKDGYTF TRBV6-1*01 TRBJ1-2*01 HLA-A*02:01 B2M MHCI FLYALALLL LMP2 EBV PMID:34811538 tetramer-sort yes amplicon-seq central memory T cells T1D T1D_2 chip0420_69709 PBMC +2 CASRGLTGGASEQYF TRBV6-1*01 TRBJ2-7*01 HLA-A*02:01 B2M MHCI YVLDHLIVV BRLF1 EBV PMID:34811538 tetramer-sort yes amplicon-seq effector memory T cells T1D T1D_2 chip0420_385621 PBMC +3 CAVKDTDKLIF TRAV8-1*01 TRAJ34*01 HLA-A*02:01 B2M MHCI YVLDHLIVV BRLF1 EBV PMID:34811538 tetramer-sort yes amplicon-seq effector memory T cells T1D T1D_2 chip0420_243839 PBMC +4 CALYNTDKLIF TRAV9-2*01 TRAJ34*01 CASSPVSESTYEQYF TRBV3-1*01 TRBJ2-7*01 HLA-A*02:01 B2M MHCI GILGFVFTL M1 InfluenzaA PMID:34811538 tetramer-sort yes amplicon-seq effector memory T cells T1D T1D_1 chip0420_202260 PBMC +5 CGTEEPNDYKLSF TRAV30*01 TRAJ20*01 CASSTGQLSNTGELFF TRBV9*01 TRBJ2-2*01 HLA-A*02:01 B2M MHCI GLCTLVAML BLMF1 EBV PMID:34811538 tetramer-sort yes amplicon-seq effector memory T cells T1D T1D_1 chip0420_545856 PBMC +6 CAPAGASGYSTLTF TRAV17*01 TRAJ11*01 CASSVQGGNYGYTF TRBV6-1*01 TRBJ1-2*01 HLA-A*02:01 B2M MHCI FLYALALLL LMP2 EBV PMID:34811538 tetramer-sort yes amplicon-seq central memory T cells T1D T1D_1 chip0420_598967 PBMC +7 CAPAGPSGYSTLTF TRAV17*01 TRAJ11*01 CASSLRGGSFYGYTF TRBV6-1*01 TRBJ1-2*01 HLA-A*02:01 B2M MHCI FLYALALLL LMP2 EBV PMID:34811538 tetramer-sort yes amplicon-seq central memory T cells T1D T1D_2 chip0420_720349 PBMC +8 CAVDPWGNQFYF TRAV39*01 TRAJ49*01 CATQQGRDSQPQHF TRBV28*01 TRBJ1-5*01 HLA-A*02:01 B2M MHCI GLCTLVAML BLMF1 EBV PMID:34811538 tetramer-sort yes amplicon-seq effector memory T cells T1D T1D_1 chip0420_729345 PBMC +9 CASSPVSGSTYEQYF TRBV3-1*01 TRBJ2-7*01 HLA-A*02:01 B2M MHCI GLCTLVAML BLMF1 EBV PMID:34811538 tetramer-sort yes amplicon-seq effector memory T cells T1D T1D_1 chip0420_758216 PBMC +10 CAVKDTDKLIF TRAV8-1*01 TRAJ34*01 CATSDLFSNEQFF TRBV24-1*01 TRBJ2-1*01 HLA-A*02:01 B2M MHCI YVLDHLIVV BRLF1 EBV PMID:34811538 tetramer-sort yes amplicon-seq effector memory T cells T1D T1D_2 chip0420_771794 PBMC +11 CAGSVEGGNYGYTF TRBV6-1*01 TRBJ1-2*01 HLA-A*02:01 B2M MHCI FLYALALLL LMP2 EBV PMID:34811538 tetramer-sort yes amplicon-seq central memory T cells T1D T1D_1 chip0420_798071 PBMC +12 CALIYYGGSQGNLIF TRAV19*01 TRAJ42*01 CATFPDGSYEQYF TRBV28*01 TRBJ2-7*01 HLA-A*02:01 B2M MHCI YLLEMLWRL LMP1 EBV PMID:34811538 tetramer-sort yes amplicon-seq central memory T cells T1D T1D_1 chip0420_53926 PBMC +13 CGTEEPNDYKLSF TRAV30*01 TRAJ20*01 CASSTGQLSNTGELFF TRBV9*01 TRBJ2-2*01 HLA-A*02:01 B2M MHCI GLCTLVAML BLMF1 EBV PMID:34811538 tetramer-sort yes amplicon-seq effector memory T cells T1D T1D_1 chip0420_141406 PBMC +14 CAAAGGTSYGKLTF TRAV25*01 TRAJ52*01 CASSFYMNTEAFF TRBV6-5*01 TRBJ1-1*01 HLA-A*02:01 B2M MHCI GLCTLVAML BLMF1 EBV PMID:34811538 tetramer-sort yes amplicon-seq effector memory T cells T1D T1D_2 chip0420_773167 PBMC +15 CILRRYGGSQGNLIF TRAV26-2*01 TRAJ42*01 CASSPVSGSTYEQYF TRBV3-1*01 TRBJ2-7*01 HLA-A*02:01 B2M MHCI GLCTLVAML BLMF1 EBV PMID:34811538 tetramer-sort yes amplicon-seq effector memory T cells T1D T1D_1 chip0420_614910 PBMC +16 CSVGTGGTNEKLFF TRBV29-1*01 TRBJ1-4*01 HLA-A*02:01 B2M MHCI GLCTLVAML BLMF1 EBV PMID:34811538 tetramer-sort yes amplicon-seq effector memory T cells T1D T1D_2 chip0420_45388 PBMC +17 CADLECW??cNNRKLIW TRAV36/DV7*01 TRAJ38*01 CASSTGQLSNTGELFF TRBV9*01 TRBJ2-2*01 HLA-A*02:01 B2M MHCI GLCTLVAML BLMF1 EBV PMID:34811538 tetramer-sort yes amplicon-seq effector memory T cells T1D T1D_1 chip0420_336963 PBMC +18 CASSLQGGNYGYTF TRBV6-5*01 TRBJ1-2*01 HLA-A*02:01 B2M MHCI FLYALALLL LMP2 EBV PMID:34811538 tetramer-sort yes amplicon-seq central memory T cells T1D T1D_2 chip0420_819541 PBMC +19 CAVNGFSGGYNKLIF TRAV8-1*01 TRAJ4*01 CASSPGDARGEQYF TRBV5-6*01 TRBJ2-7*01 HLA-A*02:01 B2M MHCI YLLEMLWRL LMP1 EBV PMID:34811538 tetramer-sort yes amplicon-seq central memory T cells T1D T1D_1 chip0420_467798 PBMC +20 CALKNTDKLIF TRAV16*01 TRAJ34*01 CSVVSGQPEVDTQYF TRBV29-1*01 TRBJ2-3*01 HLA-A*02:01 B2M MHCI LLAGIGTVPI PGT HomoSapiens PMID:34811538 tetramer-sort yes amplicon-seq effector memory T cells T1D T1D_2 chip0420_711916 PBMC +21 CILRHYGGSQGNLIF TRAV26-2*01 TRAJ42*01 CASSPVSGSTYEQYF TRBV3-1*01 TRBJ2-7*01 HLA-A*02:01 B2M MHCI GLCTLVAML BLMF1 EBV PMID:34811538 tetramer-sort yes amplicon-seq effector memory T cells T1D T1D_1 chip0420_749880 PBMC +22 CAAYAGNLLTF TRAV29/DV5*01 TRAJ39*01 HLA-A*02:01 B2M MHCI YVLDHLIVV BRLF1 EBV PMID:34811538 tetramer-sort yes amplicon-seq effector memory T cells T1D T1D_2 chip0420_244041 PBMC +23 CASSLYYNEQFF TRBV12-3*01,TRBV12-4*01 TRBJ2-1*01 HLA-A*02:01 B2M MHCI YLLEMLWRL LMP1 EBV PMID:34811538 tetramer-sort yes amplicon-seq central memory T cells T1D T1D_2 chip0420_819933 PBMC +24 CSVGSRGTNEKLFF TRBV29-1*01 TRBJ1-4*01 HLA-A*02:01 B2M MHCI GLCTLVAML BLMF1 EBV PMID:34811538 tetramer-sort yes amplicon-seq effector memory T cells T1D T1D_1 chip0420_127544 PBMC +25 CALYNTDKLIF TRAV9-2*01 TRAJ34*01 CASSPVSGSTYEQYF TRBV3-1*01 TRBJ2-7*01 HLA-A*02:01 B2M MHCI GLCTLVAML BLMF1 EBV PMID:34811538 tetramer-sort yes amplicon-seq effector memory T cells T1D T1D_1 chip0420_810050 PBMC +26 CAEAANQAGTALIF TRAV5*01 TRAJ15*01 CASSQSPGGTQYF TRBV14*01 TRBJ2-3*01 HLA-A*02:01 B2M MHCI GLCTLVAML BLMF1 EBV PMID:34811538 tetramer-sort yes amplicon-seq effector memory T cells T1D T1D_1 chip0420_723171 PBMC +27 CAASGGGADGLPF TRAV29/DV5*01 TRAJ45*01 CSVGTGGTNEKLFF TRBV29-1*01 TRBJ1-4*01 HLA-A*02:01 B2M MHCI GLCTLVAML BLMF1 EBV PMID:34811538 tetramer-sort yes amplicon-seq effector memory T cells T1D T1D_2 chip0420_281974 PBMC +28 CASSQSPGGTQYF TRBV14*01 TRBJ2-3*01 HLA-A*02:01 B2M MHCI GLCTLVAML BLMF1 EBV PMID:34811538 tetramer-sort yes amplicon-seq effector memory T cells T1D T1D_1 chip0420_351719 PBMC +29 CAVSDtt?GNDMRF TRAV8-4*01 TRAJ43*01 CSVGSRGTNEKLFF TRBV29-1*01 TRBJ1-4*01 HLA-A*02:01 B2M MHCI GLCTLVAML BLMF1 EBV PMID:34811538 tetramer-sort yes amplicon-seq effector memory T cells T1D T1D_1 chip0420_211557 PBMC +30 CVVNGRDSGYKLIF TRAV12-1*01 TRAJ12*01 CASSSGLVAPGELFF TRBV2*01 TRBJ2-2*01 HLA-A*02:01 B2M MHCI GLCTLVAML BLMF1 EBV PMID:34811538 tetramer-sort yes amplicon-seq effector memory T cells T1D T1D_2 chip0420_256016 PBMC +31 CAVRDDRDDKIIF TRAV3*01 TRAJ30*01 CASRLNAGEWYGYTF TRBV11-2*01 TRBJ1-2*01 HLA-A*02:01 B2M MHCI GLCTLVAML BLMF1 EBV PMID:34811538 tetramer-sort yes amplicon-seq effector memory T cells T1D T1D_2 chip0420_127096 PBMC +32 CVVNGGDSSYKLIF TRAV12-1*01 TRAJ12*01 CASSSGQVLPNEQFF TRBV2*01 TRBJ2-1*01 HLA-A*02:01 B2M MHCI GLCTLVAML BLMF1 EBV PMID:34811538 tetramer-sort yes amplicon-seq effector memory T cells T1D T1D_1 chip0420_859575 PBMC +33 CAESTSGGKLIF TRAV5*01 TRAJ23*01 CSVGTGGTNEKLFF TRBV29-1*01 TRBJ1-4*01 HLA-A*02:01 B2M MHCI GLCTLVAML BLMF1 EBV PMID:34811538 tetramer-sort yes amplicon-seq effector memory T cells T1D T1D_2 chip0420_561202 PBMC +34 CILWRYGGGQGNLIF TRAV26-2*01 TRAJ42*01 CASSPVSGSTYEQYF TRBV3-1*01 TRBJ2-7*01 HLA-A*02:01 B2M MHCI GLCTLVAML BLMF1 EBV PMID:34811538 tetramer-sort yes amplicon-seq effector memory T cells T1D T1D_1 chip0420_399224 PBMC +35 CATSDFLEETQYF TRBV24-1*01 TRBJ2-5*01 HLA-A*02:01 B2M MHCI YVLDHLIVV BRLF1 EBV PMID:34811538 tetramer-sort yes amplicon-seq effector memory T cells T1D T1D_2 chip0420_119404 PBMC +36 CILFMLVgt?TSYGKLTF TRAV26-2*01 TRAJ52*01 CASSSGQVLPNEQFF TRBV2*01 TRBJ2-1*01 HLA-A*02:01 B2M MHCI GLCTLVAML BLMF1 EBV PMID:34811538 tetramer-sort yes amplicon-seq effector memory T cells T1D T1D_1 chip0420_706090 PBMC +37 CALNTDKLIF TRAV8-1*01 TRAJ34*01 CASGTLAGAGQTQYF TRBV3-1*01 TRBJ2-5*01 HLA-A*02:01 B2M MHCI YVLDHLIVV BRLF1 EBV PMID:34811538 tetramer-sort yes amplicon-seq effector T cells T1D T1D_2 chip0420_816770 PBMC +38 CAVKVGF TRAV12-2*01 TRAJ48*01 CASRAGAGDTQYF TRBV10-2*01 TRBJ2-3*01 HLA-A*02:01 B2M MHCI LLAGIGTVPI PGT HomoSapiens PMID:34811538 tetramer-sort yes amplicon-seq effector memory T cells T1D T1D_2 chip0420_731090 PBMC +39 CASSEGRVSPGEAFF TRBV2*01 TRBJ1-1*01 HLA-A*02:01 B2M MHCI GLCTLVAML BLMF1 EBV PMID:34811538 tetramer-sort yes amplicon-seq transitional T cells between effector and memory populations tet_neg chip0420_640485 PBMC +40 CASRVSGGPNEQFF TRBV11-1*01 TRBJ2-1*01 HLA-A*02:01 B2M MHCI YVLDHLIVV BRLF1 EBV PMID:34811538 tetramer-sort yes amplicon-seq effector memory T cells T1D T1D_1 chip0420_733838 PBMC +41 CALYNTDKLIF TRAV9-2*01 TRAJ34*01 CASSPVSGSTYEQYF TRBV3-1*01 TRBJ2-7*01 HLA-A*02:01 B2M MHCI GLCTLVAML BLMF1 EBV PMID:34811538 tetramer-sort yes amplicon-seq effector memory T cells T1D T1D_1 chip0420_836072 PBMC +42 CVVNGKDSSYKLIF TRAV12-1*01 TRAJ12*01 CASSGGAVAPSEQFF TRBV2*01 TRBJ2-1*01 HLA-A*02:01 B2M MHCI GLCTLVAML BLMF1 EBV PMID:34811538 tetramer-sort yes amplicon-seq effector memory T cells T1D T1D_2 chip0420_310247 PBMC +43 CASSDGRVHPGTQYF TRBV2*01 TRBJ2-5*01 HLA-A*02:01 B2M MHCI GLCTLVAML BLMF1 EBV PMID:34811538 tetramer-sort yes amplicon-seq effector memory T cells T1D T1D_1 chip0420_387359 PBMC +44 CASSIRAGGAYEQYF TRBV28*01 TRBJ2-7*01 HLA-A*02:01 B2M MHCI YLLEMLWRL LMP1 EBV PMID:34811538 tetramer-sort yes amplicon-seq effector memory T cells T1D T1D_1 chip0420_561515 PBMC +45 CASSQSPGGTQYF TRBV14*01 TRBJ2-3*01 HLA-A*02:01 B2M MHCI GLCTLVAML BLMF1 EBV PMID:34811538 tetramer-sort yes amplicon-seq effector memory T cells T1D T1D_1 chip0420_390255 PBMC +46 CASSSGLVAPGELFF TRBV2*01 TRBJ2-2*01 HLA-A*02:01 B2M MHCI GLCTLVAML BLMF1 EBV PMID:34811538 tetramer-sort yes amplicon-seq effector memory T cells T1D T1D_2 chip0420_42747 PBMC +47 CAAYAGNMLTF TRAV29/DV5*01 TRAJ39*01 CASRAGAGDTQYF TRBV10-2*01 TRBJ2-3*01 HLA-A*02:01 B2M MHCI GLCTLVAML BLMF1 EBV PMID:34811538 tetramer-sort yes amplicon-seq effector T cells T1D T1D_2 chip0420_229581 PBMC +48 CASSSQGGSRGYTF TRBV6-5*01 TRBJ1-2*01 HLA-A*02:01 B2M MHCI FLYALALLL LMP2 EBV PMID:34811538 tetramer-sort yes amplicon-seq central memory T cells T1D T1D_2 chip0420_883638 PBMC +49 CASLTPGASKIIF TRAV8-6*01 TRAJ3*01 CASSSGLVAPGELFF TRBV2*01 TRBJ2-2*01 HLA-A*02:01 B2M MHCI GLCTLVAML BLMF1 EBV PMID:34811538 tetramer-sort yes amplicon-seq effector T cells T1D T1D_2 chip0420_624974 PBMC +50 CAVKDTDKLIF TRAV8-1*01 TRAJ34*01 CASSSPLGLATGYEQYF TRBV6-2*01,TRBV6-3*01 TRBJ2-7*01 HLA-A*02:01 B2M MHCI YVLDHLIVV BRLF1 EBV PMID:34811538 tetramer-sort yes amplicon-seq effector T cells T1D T1D_2 chip0420_802401 PBMC +51 CVVNGKDSSHKLIF TRAV12-1*01 TRAJ12*01 CASSGGAVAPSEQFF TRBV2*01 TRBJ2-1*01 HLA-A*02:01 B2M MHCI GLCTLVAML BLMF1 EBV PMID:34811538 tetramer-sort yes amplicon-seq effector memory T cells T1D T1D_2 chip0420_821597 PBMC +52 CVVNGRDSSYKLIF TRAV12-1*01 TRAJ12*01 CASSSGLVAPGELFF TRBV2*01 TRBJ2-2*01 HLA-A*02:01 B2M MHCI GLCTLVAML BLMF1 EBV PMID:34811538 tetramer-sort yes amplicon-seq effector memory T cells T1D T1D_2 chip0420_76586 PBMC +53 CAPAGGSAYSTLTF TRAV17*01 TRAJ11*01 CASSVQGGNYGYTF TRBV6-1*01 TRBJ1-2*01 HLA-A*02:01 B2M MHCI FLYALALLL LMP2 EBV PMID:34811538 tetramer-sort yes amplicon-seq central memory T cells T1D T1D_1 chip0420_353194 PBMC +54 CAVLSGDMRF TRAV12-2*01 TRAJ43*01 CASSDGLLSSYNEQFF TRBV9*01 TRBJ2-1*01 HLA-A*02:01 B2M MHCI LLAGIGTVPI PGT HomoSapiens PMID:34811538 tetramer-sort yes amplicon-seq effector memory T cells T1D T1D_2 chip0420_432384 PBMC +55 CASRMGAGDTQYF TRBV10-2*01 TRBJ2-3*01 HLA-A*02:01 B2M MHCI GLCTLVAML BLMF1 EBV PMID:34811538 tetramer-sort yes amplicon-seq effector memory T cells T1D T1D_2 chip0420_20382 PBMC +56 CASGTLAGAGQTQYF TRBV3-1*01 TRBJ2-5*01 HLA-A*02:01 B2M MHCI YVLDHLIVV BRLF1 EBV PMID:34811538 tetramer-sort yes amplicon-seq effector memory T cells T1D T1D_2 chip0420_635308 PBMC +57 CASSTGQLSNTGELFF TRBV9*01 TRBJ2-2*01 HLA-A*02:01 B2M MHCI GLCTLVAML BLMF1 EBV PMID:34811538 tetramer-sort yes amplicon-seq effector T cells T1D T1D_1 chip0420_736151 PBMC +58 CAESYDGYALNF TRAV5*01 TRAJ41*01 CASSQSRGSLWDTQYF TRBV4-3*01 TRBJ2-3*01 HLA-A*02:01 B2M MHCI YVLDHLIVV BRLF1 EBV PMID:34811538 tetramer-sort yes amplicon-seq effector memory T cells T1D T1D_2 chip0420_305254 PBMC +59 CSVGGSFYGYTF TRBV29-1*01 TRBJ1-2*01 HLA-A*02:01 B2M MHCI GLCTLVAML BLMF1 EBV PMID:34811538 tetramer-sort yes amplicon-seq effector memory T cells tet_neg chip0420_554677 PBMC +60 CAESTSGGKLIF TRAV5*01 TRAJ23*01 CSVGTGGTNEKLFF TRBV29-1*01 TRBJ1-4*01 HLA-A*02:01 B2M MHCI GLCTLVAML BLMF1 EBV PMID:34811538 tetramer-sort yes amplicon-seq effector memory T cells T1D T1D_2 chip0420_182823 PBMC +61 CAEAANQAGTALIF TRAV5*01 TRAJ15*01 CASSQSPGGTQYF TRBV14*01 TRBJ2-3*01 HLA-A*02:01 B2M MHCI GLCTLVAML BLMF1 EBV PMID:34811538 tetramer-sort yes amplicon-seq effector memory T cells T1D T1D_1 chip0420_846329 PBMC +62 CSVGSRGTNEKLFF TRBV29-1*01 TRBJ1-4*01 HLA-A*02:01 B2M MHCI GLCTLVAML BLMF1 EBV PMID:34811538 tetramer-sort yes amplicon-seq effector memory T cells T1D T1D_1 chip0420_766797 PBMC +63 CASSSGLVAPGELFF TRBV2*01 TRBJ2-2*01 HLA-A*02:01 B2M MHCI GLCTLVAML BLMF1 EBV PMID:34811538 tetramer-sort yes amplicon-seq effector T cells T1D T1D_2 chip0420_468825 PBMC +64 CSVGTGGTNEKLFF TRBV29-1*01 TRBJ1-4*01 HLA-A*02:01 B2M MHCI GLCTLVAML BLMF1 EBV PMID:34811538 tetramer-sort yes amplicon-seq effector memory T cells T1D T1D_2 chip0420_244939 PBMC +65 CASSLYYNEQFF TRBV12-3*01,TRBV12-4*01 TRBJ2-1*01 HLA-A*02:01 B2M MHCI YLLEMLWRL LMP1 EBV PMID:34811538 tetramer-sort yes amplicon-seq central memory T cells T1D T1D_2 chip0420_865643 PBMC +66 CSTQEGGYGYTF TRBV29-1*01 TRBJ1-2*01 HLA-A*02:01 B2M MHCI GLCTLVAML BLMF1 EBV PMID:34811538 tetramer-sort yes amplicon-seq effector memory T cells T1D T1D_1 chip0420_621741 PBMC +67 CASSPGDARGEQYF TRBV5-6*01 TRBJ2-7*01 HLA-A*02:01 B2M MHCI YLLEMLWRL LMP1 EBV PMID:34811538 tetramer-sort yes amplicon-seq central memory T cells T1D T1D_1 chip0420_301982 PBMC +68 CASTPDINTEAFF TRBV6-1*01 TRBJ1-1*01 HLA-A*02:01 B2M MHCI GLCTLVAML BLMF1 EBV PMID:34811538 tetramer-sort yes amplicon-seq effector memory T cells T1D T1D_2 chip0420_220371 PBMC +70 CSARDGTGNGYTF TRBV20-1*01 TRBJ1-2*01 HLA-A*02:01 B2M MHCI GLCTLVAML BLMF1 EBV PMID:34811538 tetramer-sort yes amplicon-seq effector memory T cells T1D T1D_1 chip0420_369958 PBMC +71 CAEKAWgg??gtYQKVTF TRAV5*01 TRAJ13*01 HLA-A*02:01 B2M MHCI GLCTLVAML BLMF1 EBV PMID:34811538 tetramer-sort yes amplicon-seq effector memory T cells T1D T1D_2 chip0420_39763 PBMC +72 CAAYAGNMLTF TRAV29/DV5*01 TRAJ39*01 CASRMGAGDTQYF TRBV10-2*01 TRBJ2-3*01 HLA-A*02:01 B2M MHCI GLCTLVAML BLMF1 EBV PMID:34811538 tetramer-sort yes amplicon-seq effector memory T cells T1D T1D_2 chip0420_37184 PBMC +73 CAAYAGNMLPF TRAV29/DV5*01 TRAJ39*01 CASRMGAGDTQYF TRBV10-2*01 TRBJ2-3*01 HLA-A*02:01 B2M MHCI GLCTLVAML BLMF1 EBV PMID:34811538 tetramer-sort yes amplicon-seq effector memory T cells T1D T1D_2 chip0420_360625 PBMC +74 CASSPQGGASEAFF TRBV6-1*01 TRBJ1-1*01 HLA-A*02:01 B2M MHCI FLYALALLL LMP2 EBV PMID:34811538 tetramer-sort yes amplicon-seq effector memory T cells T1D T1D_2 chip0420_115189 PBMC +75 CASSSGLVAPGELFF TRBV2*01 TRBJ2-2*01 HLA-A*02:01 B2M MHCI GLCTLVAML BLMF1 EBV PMID:34811538 tetramer-sort yes amplicon-seq effector memory T cells T1D T1D_2 chip0420_178662 PBMC +76 CAESTSGGKLIF TRAV5*01 TRAJ23*01 CSVGTGGTNEKLFF TRBV29-1*01 TRBJ1-4*01 HLA-A*02:01 B2M MHCI GLCTLVAML BLMF1 EBV PMID:34811538 tetramer-sort yes amplicon-seq effector memory T cells T1D T1D_2 chip0420_35398 PBMC +77 CAVPGFSGGYNKLIF TRAV8-1*01 TRAJ4*01 CASSTGQLSNTGELFF TRBV9*01 TRBJ2-2*01 HLA-A*02:01 B2M MHCI YLLEMLWRL LMP1 EBV PMID:34811538 tetramer-sort yes amplicon-seq effector memory T cells T1D T1D_1 chip0420_204556 PBMC +78 CAMREGTGNFNKFYF TRAV14/DV4*01 TRAJ21*01 CASKGIDGYTF TRBV13*01 TRBJ1-2*01 HLA-A*02:01 B2M MHCI YVLDHLIVV BRLF1 EBV PMID:34811538 tetramer-sort yes amplicon-seq effector memory T cells T1D T1D_2 chip0420_414573 PBMC +79 CASSIGSGEQFF TRBV19*01 TRBJ2-1*01 HLA-A*02:01 B2M MHCI GILGFVFTL M1 InfluenzaA PMID:34811538 tetramer-sort yes amplicon-seq transitional T cells between effector and memory populations T1D T1D_1 chip0420_657003 PBMC +80 CAEIKAGNMLTF TRAV13-2*01 TRAJ39*01 CAWRGEPSYNEQFF TRBV30*01 TRBJ2-1*01 HLA-A*02:01 B2M MHCI YVLDHLIVV BRLF1 EBV PMID:34811538 tetramer-sort yes amplicon-seq effector memory T cells T1D T1D_2 chip0420_839713 PBMC +81 CASSRQGGKDGYTF TRBV6-1*01 TRBJ1-2*01 HLA-A*02:01 B2M MHCI FLYALALLL LMP2 EBV PMID:34811538 tetramer-sort yes amplicon-seq central memory T cells T1D T1D_2 chip0420_250185 PBMC +82 CIRDAMAg?aSQGNLIF TRAV26-2*01 TRAJ42*01 CASSPVSGSTYEQYF TRBV3-1*01 TRBJ2-7*01 HLA-A*02:01 B2M MHCI GLCTLVAML BLMF1 EBV PMID:34811538 tetramer-sort yes amplicon-seq effector T cells T1D T1D_1 chip0420_464751 PBMC +83 CVVNGRDSSYKLIF TRAV12-1*01 TRAJ12*01 CASSSGLVAPGELFF TRBV2*01 TRBJ2-2*01 HLA-A*02:01 B2M MHCI GLCTLVAML BLMF1 EBV PMID:34811538 tetramer-sort yes amplicon-seq effector memory T cells T1D T1D_2 chip0420_302490 PBMC +84 CALGGLTF TRAV8-1*01 TRAJ22*01 CASSPSTSGSGETQYF TRBV3-1*01 TRBJ2-5*01 HLA-A*02:01 B2M MHCI YVLDHLIVV BRLF1 EBV PMID:34811538 tetramer-sort yes amplicon-seq effector memory T cells T1D T1D_2 chip0420_682508 PBMC +85 CILRRYGGSQGNLIF TRAV26-2*01 TRAJ42*01 CASSPVSGSTYEQYF TRBV3-1*01 TRBJ2-7*01 HLA-A*02:01 B2M MHCI GLCTLVAML BLMF1 EBV PMID:34811538 tetramer-sort yes amplicon-seq effector memory T cells T1D T1D_1 chip0420_179739 PBMC +86 CAVKGYDKIIF TRAV8-1*01 TRAJ30*01 CASSPDQTSSYNEQFF TRBV27*01 TRBJ2-1*01 HLA-A*02:01 B2M MHCI YVLDHLIVV BRLF1 EBV PMID:34811538 tetramer-sort yes amplicon-seq effector memory T cells T1D T1D_1 chip0420_57680 PBMC +87 CSAIDTSGTGGYEQYF TRBV20-1*01 TRBJ2-7*01 HLA-A*02:01 B2M MHCI LLFNILGGWV NS4B HCV PMID:34811538 tetramer-sort yes amplicon-seq effector memory T cells T1D T1D_1 chip0420_681521 PBMC +88 CSVGTGGTNEKLFF TRBV29-1*01 TRBJ1-4*01 HLA-A*02:01 B2M MHCI GLCTLVAML BLMF1 EBV PMID:34811538 tetramer-sort yes amplicon-seq effector memory T cells T1D T1D_2 chip0420_396921 PBMC +89 CVANGRDSSYKLIF TRAV12-1*01 TRAJ12*01 CASSSGLVAPGELFF TRBV2*01 TRBJ2-2*01 HLA-A*02:01 B2M MHCI GLCTLVAML BLMF1 EBV PMID:34811538 tetramer-sort yes amplicon-seq effector memory T cells T1D T1D_2 chip0420_759711 PBMC +90 CAVSDtt?GNDMRF TRAV8-4*01 TRAJ43*01 CSVGSRGTNEKLFF TRBV29-1*01 TRBJ1-4*01 HLA-A*02:01 B2M MHCI GLCTLVAML BLMF1 EBV PMID:34811538 tetramer-sort yes amplicon-seq effector memory T cells T1D T1D_1 chip0420_447856 PBMC +91 CASSQVISGNTIYF TRBV3-1*01 TRBJ1-3*01 HLA-A*02:01 B2M MHCI LLAGIGTVPI PGT HomoSapiens PMID:34811538 tetramer-sort yes amplicon-seq effector memory T cells T1D T1D_1 chip0420_794965 PBMC +92 CAAYAGNMLTF TRAV29/DV5*01 TRAJ39*01 CANRMGAGDTQYF TRBV10-2*01 TRBJ2-3*01 HLA-A*02:01 B2M MHCI GLCTLVAML BLMF1 EBV PMID:34811538 tetramer-sort yes amplicon-seq central memory T cells T1D T1D_2 chip0420_620002 PBMC +93 CAVMNTGFQKLVF TRAV8-3*01 TRAJ8*01 HLA-A*02:01 B2M MHCI YVLDHLIVV BRLF1 EBV PMID:34811538 tetramer-sort yes amplicon-seq effector T cells T1D T1D_2 chip0420_732805 PBMC +94 CSVDQRTGQKKNYGYTF TRBV29-1*01 TRBJ1-2*01 HLA-A*02:01 B2M MHCI GLCTLVAML BLMF1 EBV PMID:34811538 tetramer-sort yes amplicon-seq effector T cells T1D T1D_2 chip0420_509465 PBMC +95 CAMREGPGNFNKFYF TRAV14/DV4*01 TRAJ21*01 CASKGIDGYTF TRBV13*01 TRBJ1-2*01 HLA-A*02:01 B2M MHCI YVLDHLIVV BRLF1 EBV PMID:34811538 tetramer-sort yes amplicon-seq effector T cells T1D T1D_2 chip0420_153576 PBMC +96 CASSLMRSYNEQFF TRBV27*01 TRBJ2-1*01 HLA-A*02:01 B2M MHCI LLSLFSLWL ZNT8 HomoSapiens PMID:34811538 tetramer-sort yes amplicon-seq central memory T cells T1D T1D_2 chip0420_209192 PBMC +97 CAWSGSGTSGIMYNEQFF TRBV30*01 TRBJ2-1*01 HLA-A*02:01 B2M MHCI YVLDHLIVV BRLF1 EBV PMID:34811538 tetramer-sort yes amplicon-seq effector memory T cells T1D T1D_2 chip0420_117825 PBMC +98 CASRAGAGDTQYF TRBV10-2*01 TRBJ2-3*01 HLA-A*02:01 B2M MHCI GLCTLVAML BLMF1 EBV PMID:34811538 tetramer-sort yes amplicon-seq effector memory T cells T1D T1D_2 chip0420_309865 PBMC +99 CASSPGLRPEAFF TRBV12-3*01,TRBV12-4*01 TRBJ1-1*01 HLA-A*02:01 B2M MHCI YLVALGVNAV POL HCV PMID:34811538 tetramer-sort yes amplicon-seq natural killer-like T cells T1D T1D_1 chip0420_370780 PBMC +100 CSARDRTGNGYTF TRBV20-1*01 TRBJ1-2*01 HLA-A*02:01 B2M MHCI GLCTLVAML BLMF1 EBV PMID:34811538 tetramer-sort yes amplicon-seq effector memory T cells T1D T1D_2 chip0420_776832 PBMC +101 CAMSISNFGNEKLTF TRAV12-3*01 TRAJ48*01 CASSSGGNVDTQYF TRBV7-3*01 TRBJ2-3*01 HLA-A*02:01 B2M MHCI GLCTLVAML BLMF1 EBV PMID:34811538 tetramer-sort yes amplicon-seq effector memory T cells T1D T1D_1 chip0420_30947 PBMC +102 CSVDQRTGQKKNYGYTF TRBV29-1*01 TRBJ1-2*01 HLA-A*02:01 B2M MHCI GLCTLVAML BLMF1 EBV PMID:34811538 tetramer-sort yes amplicon-seq effector memory T cells T1D T1D_2 chip0420_643591 PBMC +104 CAESTSGGKLIF TRAV5*01 TRAJ23*01 CSVGTGGTNEKLFF TRBV29-1*01 TRBJ1-4*01 HLA-A*02:01 B2M MHCI GLCTLVAML BLMF1 EBV PMID:34811538 tetramer-sort yes amplicon-seq effector memory T cells T1D T1D_2 chip0420_176826 PBMC +105 CAESTSGGKLIF TRAV5*01 TRAJ23*01 CSVGTGGTNEKLFF TRBV29-1*01 TRBJ1-4*01 HLA-A*02:01 B2M MHCI GLCTLVAML BLMF1 EBV PMID:34811538 tetramer-sort yes amplicon-seq effector memory T cells T1D T1D_2 chip0420_327412 PBMC +106 CALGGLTF TRAV8-1*01 TRAJ22*01 CASSPSTSRSGETQYF TRBV3-1*01 TRBJ2-5*01 HLA-A*02:01 B2M MHCI YVLDHLIVV BRLF1 EBV PMID:34811538 tetramer-sort yes amplicon-seq effector memory T cells T1D T1D_2 chip0420_815130 PBMC +107 CSVGTGGTNEKLFF TRBV29-1*01 TRBJ1-4*01 HLA-A*02:01 B2M MHCI GLCTLVAML BLMF1 EBV PMID:34811538 tetramer-sort yes amplicon-seq effector T cells T1D T1D_2 chip0420_679355 PBMC +108 CSVGSRGTNEKLFF TRBV29-1*01 TRBJ1-4*01 HLA-A*02:01 B2M MHCI GLCTLVAML BLMF1 EBV PMID:34811538 tetramer-sort yes amplicon-seq effector memory T cells T1D T1D_1 chip0420_48089 PBMC +109 CALGGLTF TRAV8-1*01 TRAJ22*01 CASSPSTSGSGETQYF TRBV3-1*01 TRBJ2-5*01 HLA-A*02:01 B2M MHCI YVLDHLIVV BRLF1 EBV PMID:34811538 tetramer-sort yes amplicon-seq effector memory T cells T1D T1D_2 chip0420_469053 PBMC +110 CGPEEPNDYKLSF TRAV30*01 TRAJ20*01 CASSPGQLSNTGELFF TRBV9*01 TRBJ2-2*01 HLA-A*02:01 B2M MHCI GLCTLVAML BLMF1 EBV PMID:34811538 tetramer-sort yes amplicon-seq effector memory T cells T1D T1D_1 chip0420_689222 PBMC +111 CAAYAGNMLTF TRAV29/DV5*01 TRAJ39*01 CASRAGAGDTQYF TRBV10-2*01 TRBJ2-3*01 HLA-A*02:01 B2M MHCI GLCTLVAML BLMF1 EBV PMID:34811538 tetramer-sort yes amplicon-seq effector memory T cells T1D T1D_2 chip0420_882754 PBMC +112 CAANYGGSQGNLIF TRAV25*01 TRAJ42*01 HLA-A*02:01 B2M MHCI GILGFVFTL M1 InfluenzaA PMID:34811538 tetramer-sort yes amplicon-seq effector T cells T1D T1D_1 chip0420_811728 PBMC +113 CAVKDTDKLIF TRAV8-1*01 TRAJ34*01 CASSPHLGAAAEQYF TRBV19*01 TRBJ2-7*01 HLA-A*02:01 B2M MHCI YVLDHLIVV BRLF1 EBV PMID:34811538 tetramer-sort yes amplicon-seq effector memory T cells T1D T1D_1 chip0420_129504 PBMC +114 CVVNGRDSSYKLIF TRAV12-1*01 TRAJ12*01 CASSSGLVAPGELFF TRBV2*01 TRBJ2-2*01 HLA-A*02:01 B2M MHCI GLCTLVAML BLMF1 EBV PMID:34811538 tetramer-sort yes amplicon-seq effector T cells T1D T1D_2 chip0420_663067 PBMC +115 CAVNSKNYQLIW TRAV12-2*01 TRAJ33*01 CSDRDGGNYGYTF TRBV29-1*01 TRBJ1-2*01 HLA-A*02:01 B2M MHCI YVLDHLIVV BRLF1 EBV PMID:34811538 tetramer-sort yes amplicon-seq effector memory T cells T1D T1D_2 chip0420_364532 PBMC +116 CASRMGAGDTQYF TRBV10-2*01 TRBJ2-3*01 HLA-A*02:01 B2M MHCI GLCTLVAML BLMF1 EBV PMID:34811538 tetramer-sort yes amplicon-seq effector memory T cells T1D T1D_2 chip0420_176930 PBMC +117 CSVGSRGTNEKLFF TRBV29-1*01 TRBJ1-4*01 HLA-A*02:01 B2M MHCI GLCTLVAML BLMF1 EBV PMID:34811538 tetramer-sort yes amplicon-seq effector T cells T1D T1D_1 chip0420_28948 PBMC +118 CSVGTGGTNEKLFF TRBV29-1*01 TRBJ1-4*01 HLA-A*02:01 B2M MHCI GLCTLVAML BLMF1 EBV PMID:34811538 tetramer-sort yes amplicon-seq effector memory T cells T1D T1D_2 chip0420_341981 PBMC +119 CASSEWQGSNNEQFF TRBV6-4*01 TRBJ2-1*01 HLA-A*02:01 B2M MHCI LNIDLLWSV IGRP HomoSapiens PMID:34811538 tetramer-sort yes amplicon-seq Naive T cells tet_neg chip0420_661440 PBMC +120 CASSEGFNTYEQYF TRBV6-1*01 TRBJ2-7*01 HLA-A*02:01 B2M MHCI YVLDHLIVV BRLF1 EBV PMID:34811538 tetramer-sort yes amplicon-seq effector memory T cells T1D T1D_2 chip0420_83562 PBMC +121 CSVGTGGTNEKLFF TRBV29-1*01 TRBJ1-4*01 HLA-A*02:01 B2M MHCI GLCTLVAML BLMF1 EBV PMID:34811538 tetramer-sort yes amplicon-seq effector memory T cells T1D T1D_2 chip0420_172340 PBMC +122 CALYNTDKLIF TRAV9-2*01 TRAJ34*01 CASSPVSGSTYEQYF TRBV3-1*01 TRBJ2-7*01 HLA-A*02:01 B2M MHCI GLCTLVAML BLMF1 EBV PMID:34811538 tetramer-sort yes amplicon-seq effector memory T cells T1D T1D_1 chip0420_812878 PBMC +123 CAAYAGNMLTF TRAV29/DV5*01 TRAJ39*01 CASRAGAGDSQYF TRBV10-2*01 TRBJ2-3*01 HLA-A*02:01 B2M MHCI GLCTLVAML BLMF1 EBV PMID:34811538 tetramer-sort yes amplicon-seq effector memory T cells T1D T1D_2 chip0420_869186 PBMC +124 SAPKGGIELTV TRAV29/DV5*01 TRAJ39*01 CASRAGAGDTQYF TRBV10-2*01 TRBJ2-3*01 HLA-A*02:01 B2M MHCI GLCTLVAML BLMF1 EBV PMID:34811538 tetramer-sort yes amplicon-seq effector memory T cells T1D T1D_2 chip0420_274519 PBMC +125 CASRMGAGDTQYF TRBV10-2*01 TRBJ2-3*01 HLA-A*02:01 B2M MHCI GLCTLVAML BLMF1 EBV PMID:34811538 tetramer-sort yes amplicon-seq effector memory T cells T1D T1D_2 chip0420_43221 PBMC +127 CAVHDTDKLIF TRAV8-1*01 TRAJ34*01 CSVGTGGTNEKLFF TRBV29-1*01 TRBJ1-4*01 HLA-A*02:01 B2M MHCI YVLDHLIVV BRLF1 EBV PMID:34811538 tetramer-sort yes amplicon-seq effector memory T cells T1D T1D_2 chip0420_803892 PBMC +128 CATSDWLDGDTQYF TRAV5*01 TRAJ40*01 CSVGTGGTNEKLFF TRBV29-1*01 TRBJ1-4*01 HLA-A*02:01 B2M MHCI YVLDHLIVV BRLF1 EBV PMID:34811538 tetramer-sort yes amplicon-seq effector memory T cells T1D T1D_2 chip0420_781335 PBMC +129 WAASRSNVGKEQFTF TRAV23/DV6*01 TRAJ48*01 CASSPDPTGFGEAFF TRBV13*01 TRBJ1-1*01 HLA-A*02:01 B2M MHCI LLAGIGTVPI PGT HomoSapiens PMID:34811538 tetramer-sort yes amplicon-seq Naive T cells T1D T1D_1 chip0420_704430 PBMC +130 YVVNGRDSSYPLIF TRAV12-1*01 TRAJ12*01 HLA-A*02:01 B2M MHCI GILGFVFTL M1 InfluenzaA PMID:34811538 tetramer-sort yes amplicon-seq transitional T cells between effector and memory populations T1D T1D_1 chip0420_109000 PBMC +131 CSVVSELGAETQYF TRBV29-1*01 TRBJ2-5*01 HLA-A*02:01 B2M MHCI SLVALGINAV POL HCV PMID:34811538 tetramer-sort yes amplicon-seq Naive T cells T1D T1D_1 chip0420_332864 PBMC +132 CAVWGFQKLVF TRAV8-1*01 TRAJ8*01 CASSYGLAGINEQFF TRBV6-2*01,TRBV6-3*01 TRBJ2-1*01 HLA-A*02:01 B2M MHCI YVLDHLIVV BRLF1 EBV PMID:34811538 tetramer-sort yes amplicon-seq effector memory T cells T1D T1D_1 chip0420_822902 PBMC +133 CAESTSGGKLIF TRAV5*01 TRAJ23*01 CSVGSRGTNEKLFF TRBV29-1*01 TRBJ1-4*01 HLA-A*02:01 B2M MHCI GLCTLVAML BLMF1 EBV PMID:34811538 tetramer-sort yes amplicon-seq effector memory T cells T1D T1D_1 chip0420_505542 PBMC +134 CAESTSGGKLIF TRAV5*01 TRAJ23*01 CSVGTGGTNEKLFF TRBV29-1*01 TRBJ1-4*01 HLA-A*02:01 B2M MHCI GLCTLVAML BLMF1 EBV PMID:34811538 tetramer-sort yes amplicon-seq effector T cells T1D T1D_2 chip0420_652528 PBMC +135 CAVSDRDGGFKTIF TRAV8-4*01 TRAJ9*01 CASSINGGRRDGYTF TRBV19*01 TRBJ1-2*01 HLA-A*02:01 B2M MHCI GILGFVFTL M1 InfluenzaA PMID:34811538 tetramer-sort yes amplicon-seq transitional T cells between effector and memory populations T1D T1D_1 chip0420_514007 PBMC +136 CAVNGNQFYF TRAV8-1*01 TRAJ49*01 CASRALLGSNQPQHF TRBV19*01 TRBJ1-5*01 HLA-A*02:01 B2M MHCI YVLDHLIVV BRLF1 EBV PMID:34811538 tetramer-sort yes amplicon-seq effector T cells T1D T1D_1 chip0420_650550 PBMC +137 CALNTDKLIF TRAV8-1*01 TRAJ34*01 HLA-A*02:01 B2M MHCI YVLDHLIVV BRLF1 EBV PMID:34811538 tetramer-sort yes amplicon-seq effector memory T cells T1D T1D_2 chip0420_563720 PBMC +138 CASSLYYNEQFF TRBV12-3*01,TRBV12-4*01 TRBJ2-1*01 HLA-A*02:01 B2M MHCI YLLEMLWRL LMP1 EBV PMID:34811538 tetramer-sort yes amplicon-seq central memory T cells T1D T1D_2 chip0420_636970 PBMC +139 CASSYMSGEAFF TRBV6-2*01,TRBV6-3*01 TRBJ1-1*01 HLA-A*02:01 B2M MHCI YVLDHLIVV BRLF1 EBV PMID:34811538 tetramer-sort yes amplicon-seq effector memory T cells T1D T1D_2 chip0420_327898 PBMC +140 CVVNGRDSSYKLIF TRAV12-1*01 TRAJ12*01 CASSSGLVAPEELFF TRBV2*01 TRBJ2-2*01 HLA-A*02:01 B2M MHCI GLCTLVAML BLMF1 EBV PMID:34811538 tetramer-sort yes amplicon-seq effector memory T cells T1D T1D_2 chip0420_96282 PBMC +142 CAESTSGGKLIF TRAV5*01 TRAJ23*01 CSVGSRGTNEKLFF TRBV29-1*01 TRBJ1-4*01 HLA-A*02:01 B2M MHCI GLCTLVAML BLMF1 EBV PMID:34811538 tetramer-sort yes amplicon-seq effector memory T cells T1D T1D_1 chip0420_350791 PBMC +143 CSVGTGGTNEKLFF TRBV29-1*01 TRBJ1-4*01 HLA-A*02:01 B2M MHCI GLCTLVAML BLMF1 EBV PMID:34811538 tetramer-sort yes amplicon-seq effector memory T cells T1D T1D_2 chip0420_710777 PBMC +144 CAESTSGGKLIF TRAV5*01 TRAJ23*01 CSVGTGGTNEKLFF TRBV29-1*01 TRBJ1-4*01 HLA-A*02:01 B2M MHCI GLCTLVAML BLMF1 EBV PMID:34811538 tetramer-sort yes amplicon-seq effector memory T cells T1D T1D_2 chip0420_683062 PBMC +145 CAVKDTDKLIF TRAV8-1*01 TRAJ34*01 CASSSPGQLYEQYL TRBV27*01 TRBJ2-7*01 HLA-A*02:01 B2M MHCI YVLDHLIVV BRLF1 EBV PMID:34811538 tetramer-sort yes amplicon-seq effector memory T cells T1D T1D_2 chip0420_714023 PBMC +146 CSDRDGGNYGYTF TRBV29-1*01 TRBJ1-2*01 HLA-A*02:01 B2M MHCI YVLDHLIVV BRLF1 EBV PMID:34811538 tetramer-sort yes amplicon-seq effector memory T cells tet_neg chip0420_453001 PBMC +147 CASSQDSSGGFTYEQYF TRBV4-1*01 TRBJ2-7*01 HLA-A*02:01 B2M MHCI GILGFVFTL M1 InfluenzaA PMID:34811538 tetramer-sort yes amplicon-seq transitional T cells between effector and memory populations T1D T1D_1 chip0420_722953 PBMC +148 CASSLEGQASSYEQYF TRBV5-1*01 TRBJ2-7*01 HLA-A*02:01 B2M MHCI CLGGLLTMV LMP2A EBV PMID:34811538 tetramer-sort yes amplicon-seq effector memory T cells T1D T1D_2 chip0420_594392 PBMC +151 CASSTGQLSNTGELFF TRBV9*01 TRBJ2-2*01 HLA-A*02:01 B2M MHCI GLCTLVAML BLMF1 EBV PMID:34811538 tetramer-sort yes amplicon-seq effector T cells T1D T1D_1 chip0420_752160 PBMC +152 CGTVEPNDYKLSF TRAV30*01 TRAJ20*01 CASSTGQLSNTGELFF TRBV9*01 TRBJ2-2*01 HLA-A*02:01 B2M MHCI GLCTLVAML BLMF1 EBV PMID:34811538 tetramer-sort yes amplicon-seq effector T cells T1D T1D_1 chip0420_769662 PBMC +153 CSVGSRGTNEKLFF TRBV29-1*01 TRBJ1-4*01 HLA-A*02:01 B2M MHCI GLCTLVAML BLMF1 EBV PMID:34811538 tetramer-sort yes amplicon-seq effector memory T cells T1D T1D_1 chip0420_654184 PBMC +154 CSVGTGGTNEKLFF TRBV29-1*01 TRBJ1-4*01 HLA-A*02:01 B2M MHCI GLCTLVAML BLMF1 EBV PMID:34811538 tetramer-sort yes amplicon-seq effector memory T cells T1D T1D_2 chip0420_844297 PBMC +155 SAVTDtt?GNGLRF TRAV8-4*01 TRAJ43*01 CSVGSRGTNEKLFF TRBV29-1*01 TRBJ1-4*01 HLA-A*02:01 B2M MHCI GLCTLVAML BLMF1 EBV PMID:34811538 tetramer-sort yes amplicon-seq effector memory T cells T1D T1D_1 chip0420_477835 PBMC +156 CASSQSPGGTQYF TRBV14*01 TRBJ2-3*01 HLA-A*02:01 B2M MHCI GLCTLVAML BLMF1 EBV PMID:34811538 tetramer-sort yes amplicon-seq effector memory T cells T1D T1D_1 chip0420_681503 PBMC +157 CAVASFWac?TGGRALTF TRAV36/DV7*01 TRAJ5*01 CSARDGTGNGYTF TRBV20-1*01 TRBJ1-2*01 HLA-A*02:01 B2M MHCI GLCTLVAML BLMF1 EBV PMID:34811538 tetramer-sort yes amplicon-seq effector memory T cells T1D T1D_1 chip0420_170716 PBMC +158 CASRPLPGGGTEAFF TRBV6-1*01 TRBJ1-1*01 HLA-A*02:01 B2M MHCI YVLDHLIVV BRLF1 EBV PMID:34811538 tetramer-sort yes amplicon-seq effector T cells T1D T1D_2 chip0420_754292 PBMC +159 CASSLLVSGRNKVYEQYF TRBV11-3*01 TRBJ2-7*01 HLA-A*02:01 B2M MHCI YVLDHLIVV BRLF1 EBV PMID:34811538 tetramer-sort yes amplicon-seq effector T cells T1D T1D_2 chip0420_201840 PBMC +160 CASSEGRVSPGEAFF TRBV2*01 TRBJ1-1*01 HLA-A*02:01 B2M MHCI GLCTLVAML BLMF1 EBV PMID:34811538 tetramer-sort yes amplicon-seq effector memory T cells T1D T1D_1 chip0420_610269 PBMC +161 CAVQGYDKIIF TRAV8-1*01 TRAJ30*01 CASSPDQTSSYNEQFF TRBV27*01 TRBJ2-1*01 HLA-A*02:01 B2M MHCI YVLDHLIVV BRLF1 EBV PMID:34811538 tetramer-sort yes amplicon-seq effector memory T cells T1D T1D_1 chip0420_113384 PBMC +163 CAWRPLFGGAAEAFF TRBV30*01 TRBJ1-1*01 HLA-A*02:01 B2M MHCI YVLDHLIVV BRLF1 EBV PMID:34811538 tetramer-sort yes amplicon-seq effector memory T cells T1D T1D_1 chip0420_247554 PBMC +166 CSVGTGGTNEKLFF TRBV29-1*01 TRBJ1-4*01 HLA-A*02:01 B2M MHCI GLCTLVAML BLMF1 EBV PMID:34811538 tetramer-sort yes amplicon-seq effector memory T cells T1D T1D_2 chip0420_394655 PBMC +167 CVVNGRDSSYKLIF TRAV12-1*01 TRAJ12*01 CASSSGLVAPGELFF TRBV2*01 TRBJ2-2*01 HLA-A*02:01 B2M MHCI GLCTLVAML BLMF1 EBV PMID:34811538 tetramer-sort yes amplicon-seq effector memory T cells T1D T1D_2 chip0420_797023 PBMC +168 CASSQGGAGAADTQYF TRBV4-2*01 TRBJ2-3*01 HLA-A*02:01 B2M MHCI YVLDHLIVV BRLF1 EBV PMID:34811538 tetramer-sort yes amplicon-seq effector memory T cells T1D T1D_2 chip0420_577095 PBMC +169 CVVNGRDSSYKLIF TRAV12-1*01 TRAJ12*01 CASSSGLVAPGELFF TRBV2*01 TRBJ2-2*01 HLA-A*02:01 B2M MHCI GLCTLVAML BLMF1 EBV PMID:34811538 tetramer-sort yes amplicon-seq effector memory T cells T1D T1D_2 chip0420_43361 PBMC +170 CAGTPAITTEAFF TRAV9-1*01,TRAV8-1*01 TRAJ40*01 CASTPDINTEAFF TRBV6-1*01 TRBJ1-1*01 HLA-A*02:01 B2M MHCI GLCTLVAML BLMF1 EBV PMID:34811538 tetramer-sort yes amplicon-seq effector memory T cells T1D T1D_2 chip0420_150729 PBMC +171 CAVKDTDKLIF TRAV8-1*01 TRAJ34*01 HLA-A*02:01 B2M MHCI YVLDHLIVV BRLF1 EBV PMID:34811538 tetramer-sort yes amplicon-seq effector T cells T1D T1D_1 chip0420_649625 PBMC +172 CSVDQRTGQKKNYGYTF TRBV29-1*01 TRBJ1-2*01 HLA-A*02:01 B2M MHCI GLCTLVAML BLMF1 EBV PMID:34811538 tetramer-sort yes amplicon-seq effector memory T cells T1D T1D_2 chip0420_34206 PBMC +173 CALYNTDKLVF TRAV9-2*01 TRAJ34*01 RARSQSPGGTQYF TRBV14*01 TRBJ2-3*01 HLA-A*02:01 B2M MHCI GLCTLVAML BLMF1 EBV PMID:34811538 tetramer-sort yes amplicon-seq effector memory T cells T1D T1D_1 chip0420_687584 PBMC +174 CSVGSRGTNEKLFF TRBV29-1*01 TRBJ1-4*01 HLA-A*02:01 B2M MHCI GLCTLVAML BLMF1 EBV PMID:34811538 tetramer-sort yes amplicon-seq effector memory T cells T1D T1D_1 chip0420_446741 PBMC +175 CSVGPGGTNETLFF TRBV29-1*01 TRBJ1-4*01 HLA-A*02:01 B2M MHCI GLCTLVAML BLMF1 EBV PMID:34811538 tetramer-sort yes amplicon-seq effector memory T cells tet_neg chip0420_387902 PBMC +176 CAVSDRDGGFKTIF TRAV8-4*01 TRAJ9*01 CASSINGGRRDGYTF TRBV19*01 TRBJ1-2*01 HLA-A*02:01 B2M MHCI GILGFVFTL M1 InfluenzaA PMID:34811538 tetramer-sort yes amplicon-seq transitional T cells between effector and memory populations T1D T1D_1 chip0420_43596 PBMC +177 CASGTLAGAGQTQYF TRBV3-1*01 TRBJ2-5*01 HLA-A*02:01 B2M MHCI YVLDHLIVV BRLF1 EBV PMID:34811538 tetramer-sort yes amplicon-seq effector memory T cells T1D T1D_2 chip0420_318900 PBMC +178 CAFMTNAGGTSYGKLTF TRAV38-1*01 TRAJ52*01 HLA-A*02:01 B2M MHCI GILGFVFTL M1 InfluenzaA PMID:34811538 tetramer-sort yes amplicon-seq transitional T cells between effector and memory populations T1D T1D_1 chip0420_723693 PBMC +179 CAWSVQLAGVDEQYF TRBV30*01 TRBJ2-7*01 HLA-A*02:01 B2M MHCI YVLDHLIVV BRLF1 EBV PMID:34811538 tetramer-sort yes amplicon-seq effector T cells T1D T1D_2 chip0420_876639 PBMC +180 CASLTPGASKIIF TRAV8-6*01 TRAJ3*01 CASSSGLVAPGELFF TRBV2*01 TRBJ2-2*01 HLA-A*02:01 B2M MHCI GLCTLVAML BLMF1 EBV PMID:34811538 tetramer-sort yes amplicon-seq effector T cells T1D T1D_2 chip0420_680141 PBMC +181 CATEGSSGYSTLTF TRAV17*01 TRAJ11*01 HLA-A*02:01 B2M MHCI FLYALALLL LMP2 EBV PMID:34811538 tetramer-sort yes amplicon-seq effector memory T cells T1D T1D_2 chip0420_391533 PBMC +182 CASRMGARDTQYF TRBV10-2*01 TRBJ2-3*01 HLA-A*02:01 B2M MHCI GLCTLVAML BLMF1 EBV PMID:34811538 tetramer-sort yes amplicon-seq effector memory T cells T1D T1D_2 chip0420_848109 PBMC +183 CASSGGWMASGSSYNEQFF TRBV6-4*01 TRBJ2-1*01 HLA-A*02:01 B2M MHCI YVLDHLIVV BRLF1 EBV PMID:34811538 tetramer-sort yes amplicon-seq effector memory T cells T1D T1D_2 chip0420_460198 PBMC +185 CAYRSPPSSEKLVF TRAV38-2/DV8*01 TRAJ57*01 CSDRDGGNYGYTF TRBV29-1*01 TRBJ1-2*01 HLA-A*02:01 B2M MHCI YVLDHLIVV BRLF1 EBV PMID:34811538 tetramer-sort yes amplicon-seq effector memory T cells T1D T1D_2 chip0420_78188 PBMC +186 CASSPVSRSTYEQYF TRBV3-1*01 TRBJ2-7*01 HLA-A*02:01 B2M MHCI GLCTLVAML BLMF1 EBV PMID:34811538 tetramer-sort yes amplicon-seq effector memory T cells T1D T1D_1 chip0420_699638 PBMC +187 CSVGGSFYGYTF TRBV29-1*01 TRBJ1-2*01 HLA-A*02:01 B2M MHCI GLCTLVAML BLMF1 EBV PMID:34811538 tetramer-sort yes amplicon-seq effector memory T cells T1D T1D_2 chip0420_328875 PBMC +188 CASRMGAGDTQYF TRBV10-2*01 TRBJ2-3*01 HLA-A*02:01 B2M MHCI GLCTLVAML BLMF1 EBV PMID:34811538 tetramer-sort yes amplicon-seq effector memory T cells T1D T1D_2 chip0420_210459 PBMC +189 CSVGSRGTNEKLFF TRBV29-1*01 TRBJ1-4*01 HLA-A*02:01 B2M MHCI GLCTLVAML BLMF1 EBV PMID:34811538 tetramer-sort yes amplicon-seq effector memory T cells T1D T1D_1 chip0420_724099 PBMC +190 CAVKDTDKLIF TRAV8-1*01 TRAJ34*01 HLA-A*02:01 B2M MHCI YVLDHLIVV BRLF1 EBV PMID:34811538 tetramer-sort yes amplicon-seq effector T cells T1D T1D_2 chip0420_533009 PBMC +191 CASDVVSPPQHF TRBV19*01 TRBJ1-5*01 HLA-A*02:01 B2M MHCI YLLPRRGPRL POL HCV PMID:34811538 tetramer-sort yes amplicon-seq Naive T cells T1D T1D_1 chip0420_84085 PBMC +192 CAVSEP*a?tNNARLMF TRAV8-6*01 TRAJ31*01 CAWSVQLAGVDEQYF TRBV30*01 TRBJ2-7*01 HLA-A*02:01 B2M MHCI YVLDHLIVV BRLF1 EBV PMID:34811538 tetramer-sort yes amplicon-seq effector memory T cells T1D T1D_2 chip0420_61184 PBMC +193 CASSFRTGASFEEFF TRBV28*01 TRBJ2-1*01 HLA-A*02:01 B2M MHCI YLLLRVLNI IGRP HomoSapiens PMID:34811538 tetramer-sort yes amplicon-seq transitional T cells between effector and memory populations T1D T1D_1 chip0420_31764 PBMC +194 CASGLPDGNYGYTF TRBV6-5*01 TRBJ1-2*01 HLA-A*02:01 B2M MHCI FLYALALLL LMP2 EBV PMID:34811538 tetramer-sort yes amplicon-seq central memory T cells T1D T1D_2 chip0420_345312 PBMC +195 CVVNGRDSSYKLIF TRAV12-1*01 TRAJ12*01 CASSSGLVAPGELFF TRBV2*01 TRBJ2-2*01 HLA-A*02:01 B2M MHCI GLCTLVAML BLMF1 EBV PMID:34811538 tetramer-sort yes amplicon-seq effector memory T cells T1D T1D_2 chip0420_11195 PBMC +196 CAVKDTDKLIF TRAV8-1*01 TRAJ34*01 HLA-A*02:01 B2M MHCI YVLDHLIVV BRLF1 EBV PMID:34811538 tetramer-sort yes amplicon-seq effector T cells T1D T1D_2 chip0420_829853 PBMC +197 CAVFDTDKLIF TRAV8-1*01 TRAJ34*01 CASSGGWMASGSSYNEQFF TRBV6-4*01 TRBJ2-1*01 HLA-A*02:01 B2M MHCI YVLDHLIVV BRLF1 EBV PMID:34811538 tetramer-sort yes amplicon-seq effector memory T cells T1D T1D_2 chip0420_69116 PBMC +198 CVVNIETGAHNLFF TRAV12-1*01 TRAJ36*01 CSARGQGHEQYF TRBV20-1*01 TRBJ2-7*01 HLA-A*02:01 B2M MHCI FLWSVFWLI IGRP HomoSapiens PMID:34811538 tetramer-sort yes amplicon-seq Naive T cells T1D T1D_1 chip0420_651499 PBMC +199 CGTEEPNDYKLSF TRAV30*01 TRAJ20*01 CASSTGQLSNTGELFF TRBV9*01 TRBJ2-2*01 HLA-A*02:01 B2M MHCI GLCTLVAML BLMF1 EBV PMID:34811538 tetramer-sort yes amplicon-seq effector memory T cells T1D T1D_1 chip0420_425636 PBMC +200 CSVGSRGTNEKLFF TRBV29-1*01 TRBJ1-4*01 HLA-A*02:01 B2M MHCI GLCTLVAML BLMF1 EBV PMID:34811538 tetramer-sort yes amplicon-seq effector memory T cells T1D T1D_1 chip0420_485997 PBMC +202 CSVGPGGTAEKLFF TRBV29-1*01 TRBJ1-4*01 HLA-A*02:01 B2M MHCI LLAGIGTVPI PGT HomoSapiens PMID:34811538 tetramer-sort yes amplicon-seq Naive T cells T1D T1D_1 chip0420_353466 PBMC +204 CSSQEGGYGYTF TRBV29-1*01 TRBJ1-2*01 HLA-A*02:01 B2M MHCI GLCTLVAML BLMF1 EBV PMID:34811538 tetramer-sort yes amplicon-seq effector memory T cells T1D T1D_2 chip0420_76292 PBMC +205 CAVNGNDKIIF TRAV8-1*01 TRAJ30*01 CASRGLTGGASEQYF TRBV6-1*01 TRBJ2-7*01 HLA-A*02:01 B2M MHCI YVLDHLIVV BRLF1 EBV PMID:34811538 tetramer-sort yes amplicon-seq effector memory T cells T1D T1D_2 chip0420_608947 PBMC +206 CASSIYGGSGEAFF TRBV19*01 TRBJ1-1*01 HLA-A*02:01 B2M MHCI GILGFVFTL M1 InfluenzaA PMID:34811538 tetramer-sort yes amplicon-seq transitional T cells between effector and memory populations T1D T1D_1 chip0420_622861 PBMC +207 CAVVSNSGYALNF TRAV21*01 TRAJ41*01 CASSSGGNVDTQYF TRBV7-3*01 TRBJ2-3*01 HLA-A*02:01 B2M MHCI GLCTLVAML BLMF1 EBV PMID:34811538 tetramer-sort yes amplicon-seq effector memory T cells T1D T1D_1 chip0420_651282 PBMC +208 CSVLAAYEQYF TRBV20-1*01 TRBJ2-7*01 HLA-A*02:01 B2M MHCI KMYAFTLES ZNT8 HomoSapiens PMID:34811538 tetramer-sort yes amplicon-seq transitional T cells between effector and memory populations T1D T1D_2 chip0420_425356 PBMC +209 CSVGSRGTNEKLFF TRBV29-1*01 TRBJ1-4*01 HLA-A*02:01 B2M MHCI GLCTLVAML BLMF1 EBV PMID:34811538 tetramer-sort yes amplicon-seq effector memory T cells T1D T1D_1 chip0420_504651 PBMC +210 CAESTSGGKLIF TRAV5*01 TRAJ23*01 CSVGTGGTNEKLFF TRBV29-1*01 TRBJ1-4*01 HLA-A*02:01 B2M MHCI GLCTLVAML BLMF1 EBV PMID:34811538 tetramer-sort yes amplicon-seq effector T cells T1D T1D_2 chip0420_594465 PBMC +211 CAVKDTDKLIF TRAV8-1*01 TRAJ34*01 RASSDLANEQFF TRBV10-1*01 TRBJ2-1*01 HLA-A*02:01 B2M MHCI YVLDHLIVV BRLF1 EBV PMID:34811538 tetramer-sort yes amplicon-seq effector memory T cells T1D T1D_2 chip0420_596058 PBMC +212 CGTQENDSWGKLQF TRAV30*01 TRAJ24*01 CASSVRAGETQYF TRBV19*01 TRBJ2-5*01 HLA-A*02:01 B2M MHCI GILGFVFTL M1 InfluenzaA PMID:34811538 tetramer-sort yes amplicon-seq transitional T cells between effector and memory populations T1D T1D_1 chip0420_514032 PBMC +213 CASSDTGTMHYEQYF TRBV12-3*01,TRBV12-4*01 TRBJ2-7*01 HLA-A*02:01 B2M MHCI LLAGIGTVPI PGT HomoSapiens PMID:34811538 tetramer-sort yes amplicon-seq Naive T cells T1D T1D_1 chip0420_39354 PBMC +214 CASLTPGASKIIF TRAV8-6*01 TRAJ3*01 CASSSGLVAPGELFF TRBV2*01 TRBJ2-2*01 HLA-A*02:01 B2M MHCI GLCTLVAML BLMF1 EBV PMID:34811538 tetramer-sort yes amplicon-seq effector memory T cells T1D T1D_2 chip0420_50945 PBMC +215 CSVGTGGTNEKLFF TRBV29-1*01 TRBJ1-4*01 HLA-A*02:01 B2M MHCI GLCTLVAML BLMF1 EBV PMID:34811538 tetramer-sort yes amplicon-seq effector T cells T1D T1D_2 chip0420_342511 PBMC +216 CASSQSPGGTQYF TRBV14*01 TRBJ2-3*01 HLA-A*02:01 B2M MHCI GLCTLVAML BLMF1 EBV PMID:34811538 tetramer-sort yes amplicon-seq effector T cells T1D T1D_1 chip0420_187187 PBMC +217 CAEAANQAGTALIF TRAV5*01 TRAJ15*01 CASSQSPGGTQYF TRBV14*01 TRBJ2-3*01 HLA-A*02:01 B2M MHCI GLCTLVAML BLMF1 EBV PMID:34811538 tetramer-sort yes amplicon-seq effector T cells T1D T1D_1 chip0420_190508 PBMC +218 CAVKDTDKLIF TRAV8-1*01 TRAJ34*01 CAWSVQLAGVDEQYF TRBV30*01 TRBJ2-7*01 HLA-A*02:01 B2M MHCI YVLDHLIVV BRLF1 EBV PMID:34811538 tetramer-sort yes amplicon-seq effector T cells T1D T1D_2 chip0420_817541 PBMC +219 CASSARSAYEQYF TRBV19*01 TRBJ2-7*01 HLA-A*02:01 B2M MHCI GILGFVFTL M1 InfluenzaA PMID:34811538 tetramer-sort yes amplicon-seq transitional T cells between effector and memory populations T1D T1D_1 chip0420_726278 PBMC +220 CAESTSGGKLIF TRAV5*01 TRAJ23*01 CSVGTGGTNEKLFF TRBV29-1*01 TRBJ1-4*01 HLA-A*02:01 B2M MHCI GLCTLVAML BLMF1 EBV PMID:34811538 tetramer-sort yes amplicon-seq effector memory T cells T1D T1D_2 chip0420_691929 PBMC +221 CAATSYTGTASKLTF TRAV8-1*01 TRAJ44*01 CASSLYYNEQFF TRBV12-3*01,TRBV12-4*01 TRBJ2-1*01 HLA-A*02:01 B2M MHCI YLLEMLWRL LMP1 EBV PMID:34811538 tetramer-sort yes amplicon-seq central memory T cells T1D T1D_2 chip0420_431752 PBMC +222 CALNTDKLIF TRAV8-1*01 TRAJ34*01 CASGTLAGAGQTQYF TRBV3-1*01 TRBJ2-5*01 HLA-A*02:01 B2M MHCI YVLDHLIVV BRLF1 EBV PMID:34811538 tetramer-sort yes amplicon-seq effector memory T cells T1D T1D_2 chip0420_330738 PBMC +223 CAVSGGFKTIF TRAV12-2*01 TRAJ9*01 CASMDSNSGNTIYF TRBV2*01 TRBJ1-3*01 HLA-A*02:01 B2M MHCI KLQVFLIVL IAPP HomoSapiens PMID:34811538 tetramer-sort yes amplicon-seq effector T cells T1D T1D_2 chip0420_123806 PBMC +224 CASSAGQVAPGEQYF TRBV2*01 TRBJ2-7*01 HLA-A*02:01 B2M MHCI GLCTLVAML BLMF1 EBV PMID:34811538 tetramer-sort yes amplicon-seq effector memory T cells T1D T1D_2 chip0420_429300 PBMC +225 CAVKDTDKLIF TRAV8-1*01 TRAJ34*01 HLA-A*02:01 B2M MHCI YVLDHLIVV BRLF1 EBV PMID:34811538 tetramer-sort yes amplicon-seq effector memory T cells T1D T1D_1 chip0420_789936 PBMC +226 CASRAGAGDTQYF TRBV10-2*01 TRBJ2-3*01 HLA-A*02:01 B2M MHCI GLCTLVAML BLMF1 EBV PMID:34811538 tetramer-sort yes amplicon-seq effector memory T cells T1D T1D_2 chip0420_125123 PBMC +227 CASSQDLLAVGELFF TRBV3-1*01 TRBJ2-2*01 HLA-A*02:01 B2M MHCI YVLDHLIVV BRLF1 EBV PMID:34811538 tetramer-sort yes amplicon-seq effector T cells T1D T1D_2 chip0420_2503 PBMC +228 CASSPSTSGSGETQYF TRBV3-1*01 TRBJ2-5*01 HLA-A*02:01 B2M MHCI YVLDHLIVV BRLF1 EBV PMID:34811538 tetramer-sort yes amplicon-seq effector memory T cells T1D T1D_2 chip0420_135619 PBMC +229 CASSSGLVAPGELFF TRBV2*01 TRBJ2-2*01 HLA-A*02:01 B2M MHCI GLCTLVAML BLMF1 EBV PMID:34811538 tetramer-sort yes amplicon-seq effector memory T cells T1D T1D_2 chip0420_755067 PBMC +230 CAWSVQLAGVDEQYF TRBV30*01 TRBJ2-7*01 HLA-A*02:01 B2M MHCI YVLDHLIVV BRLF1 EBV PMID:34811538 tetramer-sort yes amplicon-seq effector T cells T1D T1D_2 chip0420_186825 PBMC +231 CASSSDSNQPQHF TRBV11-1*01 TRBJ1-5*01 HLA-A*02:01 B2M MHCI CINGVCWTV NS3 HCV PMID:34811538 tetramer-sort yes amplicon-seq Naive T cells T1D T1D_1 chip0420_829592 PBMC +234 CAVVSNSGYALNF TRAV12-2*01 TRAJ41*01 CASSSGGNVDTQYF TRBV7-3*01 TRBJ2-3*01 HLA-A*02:01 B2M MHCI GLCTLVAML BLMF1 EBV PMID:34811538 tetramer-sort yes amplicon-seq effector memory T cells T1D T1D_1 chip0420_273108 PBMC +235 CASRMGAGDTQYF TRBV10-2*01 TRBJ2-3*01 HLA-A*02:01 B2M MHCI GLCTLVAML BLMF1 EBV PMID:34811538 tetramer-sort yes amplicon-seq effector memory T cells T1D T1D_2 chip0420_752108 PBMC +236 CASSPVSGSTYEQYF TRBV3-1*01 TRBJ2-7*01 HLA-A*02:01 B2M MHCI GLCTLVAML BLMF1 EBV PMID:34811538 tetramer-sort yes amplicon-seq effector memory T cells T1D T1D_1 chip0420_195240 PBMC +237 CASSINGGRRDGYTF TRBV19*01 TRBJ1-2*01 HLA-A*02:01 B2M MHCI GILGFVFTL M1 InfluenzaA PMID:34811538 tetramer-sort yes amplicon-seq transitional T cells between effector and memory populations T1D T1D_1 chip0420_199688 PBMC +238 CATEGASGYSTLTF TRAV17*01 TRAJ11*01 CASSVQGGHYGYTF TRBV6-1*01 TRBJ1-2*01 HLA-A*02:01 B2M MHCI FLYALALLL LMP2 EBV PMID:34811538 tetramer-sort yes amplicon-seq effector memory T cells T1D T1D_1 chip0420_669095 PBMC +239 CASSSGLVAPGELFF TRBV2*01 TRBJ2-2*01 HLA-A*02:01 B2M MHCI GLCTLVAML BLMF1 EBV PMID:34811538 tetramer-sort yes amplicon-seq effector T cells T1D T1D_2 chip0420_74890 PBMC +240 CALYNADKLIF TRAV9-2*01 TRAJ34*01 HLA-A*02:01 B2M MHCI GLCTLVAML BLMF1 EBV PMID:34811538 tetramer-sort yes amplicon-seq effector memory T cells T1D T1D_1 chip0420_184522 PBMC +241 CAVPDDKIIF TRAV12-2*01 TRAJ30*01 CASSPRWSENEQFF TRBV12-3*01,TRBV12-4*01 TRBJ2-1*01 HLA-A*02:01 B2M MHCI LLAGIGTVPI PGT HomoSapiens PMID:34811538 tetramer-sort yes amplicon-seq central memory T cells T1D T1D_2 chip0420_355396 PBMC +242 CASRAGAGATQYF TRBV10-2*01 TRBJ2-3*01 HLA-A*02:01 B2M MHCI GLCTLVAML BLMF1 EBV PMID:34811538 tetramer-sort yes amplicon-seq effector memory T cells T1D T1D_2 chip0420_706255 PBMC +243 CAPRGSARQLTL TRAV9-2*01 TRAJ22*01 CASSFLGTGLNEQYF TRBV28*01 TRBJ2-7*01 HLA-A*02:01 B2M MHCI GILGFVFTL M1 InfluenzaA PMID:34811538 tetramer-sort yes amplicon-seq transitional T cells between effector and memory populations T1D T1D_1 chip0420_285061 PBMC +244 CALKDTDKLIF TRAV16*01 TRAJ34*01 CATSDWLTNEQYF TRBV24-1*01 TRBJ2-7*01 HLA-A*02:01 B2M MHCI YVLDHLIVV BRLF1 EBV PMID:34811538 tetramer-sort yes amplicon-seq effector memory T cells T1D T1D_1 chip0420_36687 PBMC +245 CSVGTGGTNEKLFF TRBV29-1*01 TRBJ1-4*01 HLA-A*02:01 B2M MHCI GLCTLVAML BLMF1 EBV PMID:34811538 tetramer-sort yes amplicon-seq effector memory T cells T1D T1D_2 chip0420_42983 PBMC +246 CASSTGQLSNTGELFF TRBV9*01 TRBJ2-2*01 HLA-A*02:01 B2M MHCI GLCTLVAML BLMF1 EBV PMID:34811538 tetramer-sort yes amplicon-seq effector memory T cells T1D T1D_1 chip0420_781626 PBMC +247 CAWSDQLGAARELFF TRBV30*01 TRBJ2-2*01 HLA-A*02:01 B2M MHCI YVLDHLIVV BRLF1 EBV PMID:34811538 tetramer-sort yes amplicon-seq effector memory T cells tet_neg chip0420_783196 PBMC +248 CVVNPPHDYKLSF TRAV12-1*01 TRAJ20*01 CASSVGVLSAGELFF TRBV9*01 TRBJ2-2*01 HLA-A*02:01 B2M MHCI GLCTLVAML BLMF1 EBV PMID:34811538 tetramer-sort yes amplicon-seq effector memory T cells T1D T1D_2 chip0420_765958 PBMC +249 CAFGGLTF TRAV8-1*01 TRAJ22*01 CASSPSTSGSGETQYF TRBV3-1*01 TRBJ2-5*01 HLA-A*02:01 B2M MHCI YVLDHLIVV BRLF1 EBV PMID:34811538 tetramer-sort yes amplicon-seq effector memory T cells T1D T1D_2 chip0420_556548 PBMC +250 CGPEEPNDYKLSF TRAV30*01 TRAJ20*01 CASSTGQLSNTGELFF TRBV9*01 TRBJ2-2*01 HLA-A*02:01 B2M MHCI GLCTLVAML BLMF1 EBV PMID:34811538 tetramer-sort yes amplicon-seq effector memory T cells T1D T1D_1 chip0420_377089 PBMC +251 CASSPTSGSIYEQFF TRBV3-1*01 TRBJ2-1*01 HLA-A*02:01 B2M MHCI GLCTLVAML BLMF1 EBV PMID:34811538 tetramer-sort yes amplicon-seq effector memory T cells T1D T1D_1 chip0420_160012 PBMC +252 CAVNSKNYQLIW TRAV12-2*01 TRAJ33*01 CSDRDGGNYGYTF TRBV29-1*01 TRBJ1-2*01 HLA-A*02:01 B2M MHCI YVLDHLIVV BRLF1 EBV PMID:34811538 tetramer-sort yes amplicon-seq effector T cells T1D T1D_2 chip0420_830807 PBMC +253 CAEDNNARLLF TRAV5*01 TRAJ31*01 CSVDQRTGQKKNYGYTF TRBV29-1*01 TRBJ1-2*01 HLA-A*02:01 B2M MHCI GLCTLVAML BLMF1 EBV PMID:34811538 tetramer-sort yes amplicon-seq effector memory T cells T1D T1D_2 chip0420_598374 PBMC +255 CAVDPWGNQFYF TRAV39*01 TRAJ49*01 CATQQGRDSQPQHF TRBV28*01 TRBJ1-5*01 HLA-A*02:01 B2M MHCI GLCTLVAML BLMF1 EBV PMID:34811538 tetramer-sort yes amplicon-seq effector T cells T1D T1D_1 chip0420_59317 PBMC +256 CAESTSGGKLIF TRAV5*01 TRAJ23*01 CSVGTGGTNEKLFF TRBV29-1*01 TRBJ1-4*01 HLA-A*02:01 B2M MHCI GLCTLVAML BLMF1 EBV PMID:34811538 tetramer-sort yes amplicon-seq effector memory T cells T1D T1D_2 chip0420_463956 PBMC +257 CAMREAMDSSYKLIF TRAV14/DV4*01 TRAJ12*01 CARSPEGEGVHAEAFF TRBV4-2*01 TRBJ1-1*01 HLA-A*02:01 B2M MHCI YLLPGWKL VP3 RotavirusA PMID:34811538 tetramer-sort yes amplicon-seq Naive T cells T1D T1D_1 chip0420_246608 PBMC +258 CAFLPAGGS??gRFPPDNLIF TRAV24*01 TRAJ42*01 CASSRASTDTQYF TRBV19*01 TRBJ2-3*01 HLA-A*02:01 B2M MHCI GILGFVFTL M1 InfluenzaA PMID:34811538 tetramer-sort yes amplicon-seq transitional T cells between effector and memory populations T1D T1D_1 chip0420_718380 PBMC +260 CASSIPGDTEAFF TRBV12-3*01,TRBV12-4*01 TRBJ1-1*01 HLA-A*02:01 B2M MHCI LLAGIGTVPI PGT HomoSapiens PMID:34811538 tetramer-sort yes amplicon-seq central memory T cells T1D T1D_2 chip0420_587058 PBMC +261 CAVKRRAAGNKLTF TRAV12-2*01 TRAJ17*01 HLA-A*02:01 B2M MHCI YVLDHLIVV BRLF1 EBV PMID:34811538 tetramer-sort yes amplicon-seq effector memory T cells T1D T1D_2 chip0420_241584 PBMC +262 CSVRDGTGNGYTF TRBV20-1*01 TRBJ1-2*01 HLA-A*02:01 B2M MHCI GLCTLVAML BLMF1 EBV PMID:34811538 tetramer-sort yes amplicon-seq effector memory T cells T1D T1D_1 chip0420_248721 PBMC +263 CASRGLGAVSGANVLTF TRBV27*01 TRBJ2-6*01 HLA-A*02:01 B2M MHCI KIVALGINAV POL HCV PMID:34811538 tetramer-sort yes amplicon-seq natural killer-like T cells T1D T1D_1 chip0420_462068 PBMC +264 CSVGSRGTNEKLFF TRBV29-1*01 TRBJ1-4*01 HLA-A*02:01 B2M MHCI GLCTLVAML BLMF1 EBV PMID:34811538 tetramer-sort yes amplicon-seq effector T cells T1D T1D_1 chip0420_172481 PBMC +265 CSVGTGGTNEKLFF TRBV29-1*01 TRBJ1-4*01 HLA-A*02:01 B2M MHCI GLCTLVAML BLMF1 EBV PMID:34811538 tetramer-sort yes amplicon-seq effector memory T cells T1D T1D_2 chip0420_210428 PBMC +267 CASSWGTGELETQYF TRBV5-6*01 TRBJ2-5*01 HLA-A*02:01 B2M MHCI LLAGIGTVPI PGT HomoSapiens PMID:34811538 tetramer-sort yes amplicon-seq transitional T cells between effector and memory populations T1D T1D_1 chip0420_610994 PBMC +268 CAMSVNAGGTSYGKLTF TRAV12-3*01 TRAJ52*01 CASSIGIYGYTF TRBV19*01 TRBJ1-2*01 HLA-A*02:01 B2M MHCI GILGFVFTL M1 InfluenzaA PMID:34811538 tetramer-sort yes amplicon-seq transitional T cells between effector and memory populations T1D T1D_1 chip0420_828601 PBMC +269 CSVGTGGTNEKLFF TRBV29-1*01 TRBJ1-4*01 HLA-A*02:01 B2M MHCI GLCTLVAML BLMF1 EBV PMID:34811538 tetramer-sort yes amplicon-seq effector T cells T1D T1D_2 chip0420_205369 PBMC +270 CVVPLVgt?ATNTLIF TRAV12-1*01 TRAJ32*01 CSARDGVGNGYTF TRBV20-1*01 TRBJ1-2*01 HLA-A*02:01 B2M MHCI GLCTLVAML BLMF1 EBV PMID:34811538 tetramer-sort yes amplicon-seq effector memory T cells T1D T1D_1 chip0420_182351 PBMC +271 CAYRSLGNEKLTF TRAV38-1*01 TRAJ48*01 CSVCILAQNYNEQFF TRBV29-1*01 TRBJ2-1*01 HLA-A*02:01 B2M MHCI LLAGIGTVPI PGT HomoSapiens PMID:34811538 tetramer-sort yes amplicon-seq effector memory T cells T1D T1D_2 chip0420_431894 PBMC +272 CAMSEGSNYQLIW TRAV12-3*01 TRAJ33*01 HLA-A*02:01 B2M MHCI LLAGIGTVPI PGT HomoSapiens PMID:34811538 tetramer-sort yes amplicon-seq Naive T cells T1D T1D_1 chip0420_623654 PBMC +273 CSVGTGGTNEKLFF TRBV29-1*01 TRBJ1-4*01 HLA-A*02:01 B2M MHCI GLCTLVAML BLMF1 EBV PMID:34811538 tetramer-sort yes amplicon-seq effector T cells T1D T1D_2 chip0420_83470 PBMC +274 CASSVVGNEQFF TRBV9*01 TRBJ2-1*01 HLA-A*02:01 B2M MHCI GLCTLVAML BLMF1 EBV PMID:34811538 tetramer-sort yes amplicon-seq effector memory T cells T1D T1D_2 chip0420_609098 PBMC +275 CDLRQNFVF TRAV29/DV5*01 TRAJ26*01 CASNLAGNNEQFF TRBV9*01 TRBJ2-1*01 HLA-A*02:01 B2M MHCI GLCTLVAML BLMF1 EBV PMID:34811538 tetramer-sort yes amplicon-seq effector memory T cells T1D T1D_2 chip0420_78695 PBMC +276 CVINSSNTSYNLIF TRAV12-1*01 TRAJ12*01 CASSSGLVAPGELFF TRBV2*01 TRBJ2-2*01 HLA-A*02:01 B2M MHCI GLCTLVAML BLMF1 EBV PMID:34811538 tetramer-sort yes amplicon-seq effector memory T cells T1D T1D_2 chip0420_772121 PBMC +277 CAASINREag??gcSTLGRLYF TRAV13-1*01 TRAJ18*01 CASSLNQGGEQYF TRBV4-1*01 TRBJ2-7*01 HLA-A*02:01 B2M MHCI GLCTLVAML BLMF1 EBV PMID:34811538 tetramer-sort yes amplicon-seq effector memory T cells T1D T1D_2 chip0420_872099 PBMC +278 CAMTVPNFGNANLAF TRAV12-3*01 TRAJ48*01 HLA-A*02:01 B2M MHCI LLAGIGTVPI PGT HomoSapiens PMID:34811538 tetramer-sort yes amplicon-seq Naive T cells T1D T1D_1 chip0420_297141 PBMC +280 CSVGTGGTNEKLFF TRBV29-1*01 TRBJ1-4*01 HLA-A*02:01 B2M MHCI GLCTLVAML BLMF1 EBV PMID:34811538 tetramer-sort yes amplicon-seq effector T cells T1D T1D_2 chip0420_206948 PBMC +281 CASRAGAGDTQYF TRBV10-2*01 TRBJ2-3*01 HLA-A*02:01 B2M MHCI GLCTLVAML BLMF1 EBV PMID:34811538 tetramer-sort yes amplicon-seq effector memory T cells T1D T1D_2 chip0420_709853 PBMC +282 CSVGTGGTNEKLFF TRBV29-1*01 TRBJ1-4*01 HLA-A*02:01 B2M MHCI GLCTLVAML BLMF1 EBV PMID:34811538 tetramer-sort yes amplicon-seq effector memory T cells T1D T1D_2 chip0420_803050 PBMC +283 CAASRGYSTLTF TRAV13-1*01 TRAJ11*01 CASSRSGSYNEQFF TRBV3-1*01 TRBJ2-1*01 HLA-A*02:01 B2M MHCI HLVEALYLV PREINS HomoSapiens PMID:34811538 tetramer-sort yes amplicon-seq central memory T cells T1D T1D_2 chip0420_408697 PBMC +284 CVVNGGDSSYKLIF TRAV12-1*01 TRAJ12*01 CASSSGQVLPNEQFF TRBV2*01 TRBJ2-1*01 HLA-A*02:01 B2M MHCI GLCTLVAML BLMF1 EBV PMID:34811538 tetramer-sort yes amplicon-seq effector memory T cells T1D T1D_1 chip0420_355933 PBMC +285 CAESTSGGKLIF TRAV5*01 TRAJ23*01 CSVGTGGTNEKLFF TRBV29-1*01 TRBJ1-4*01 HLA-A*02:01 B2M MHCI GLCTLVAML BLMF1 EBV PMID:34811538 tetramer-sort yes amplicon-seq effector memory T cells T1D T1D_2 chip0420_645913 PBMC +286 CAVKDTDKLIF TRAV8-1*01 TRAJ34*01 RASRFVCDKVGAFF TRBV7-4*01 TRBJ1-1*01 HLA-A*02:01 B2M MHCI YVLDHLIVV BRLF1 EBV PMID:34811538 tetramer-sort yes amplicon-seq effector memory T cells T1D T1D_2 chip0420_572614 PBMC +287 CSVDQRTGQKKNYGYTF TRBV29-1*01 TRBJ1-2*01 HLA-A*02:01 B2M MHCI GLCTLVAML BLMF1 EBV PMID:34811538 tetramer-sort yes amplicon-seq effector memory T cells T1D T1D_2 chip0420_607654 PBMC +288 CAMSGPNFGNEKLTF TRAV12-3*01 TRAJ48*01 CASSSGLAGEPSNTGELFF TRBV11-3*01 TRBJ2-2*01 HLA-A*02:01 B2M MHCI LLAGIGTVPI PGT HomoSapiens PMID:34811538 tetramer-sort yes amplicon-seq Naive T cells T1D T1D_1 chip0420_576980 PBMC +289 CASSFGQGLEGYTF TRBV12-3*01,TRBV12-4*01 TRBJ1-2*01 HLA-A*02:01 B2M MHCI YLLPGWKL VP3 RotavirusA PMID:34811538 tetramer-sort yes amplicon-seq Naive T cells T1D T1D_1 chip0420_577959 PBMC +291 CALGGLTF TRAV8-1*01 TRAJ22*01 HLA-A*02:01 B2M MHCI YVLDHLIVV BRLF1 EBV PMID:34811538 tetramer-sort yes amplicon-seq effector memory T cells T1D T1D_2 chip0420_94663 PBMC +293 CASTPDINTEAFF TRAV9-1*01 TRAJ40*01 CASTPDINTEAFF TRBV6-1*01 TRBJ1-1*01 HLA-A*02:01 B2M MHCI GLCTLVAML BLMF1 EBV PMID:34811538 tetramer-sort yes amplicon-seq central memory T cells T1D T1D_2 chip0420_535981 PBMC +294 CAEDHGARLMF TRAV5*01,TRAV23/DV6*01 TRAJ31*01 CSVDQRTGQKKNYGYTF TRBV29-1*01 TRBJ1-2*01 HLA-A*02:01 B2M MHCI GLCTLVAML BLMF1 EBV PMID:34811538 tetramer-sort yes amplicon-seq effector T cells T1D T1D_2 chip0420_843321 PBMC +295 CAGSAGSSNTGKLIF TRAV27*01 TRAJ37*01 CASSIRSAYEQYF TRBV19*01 TRBJ2-7*01 HLA-A*02:01 B2M MHCI GILGFVFTL M1 InfluenzaA PMID:34811538 tetramer-sort yes amplicon-seq transitional T cells between effector and memory populations T1D T1D_1 chip0420_612365 PBMC +296 CSVGTGGTNEKLFF TRBV29-1*01 TRBJ1-4*01 HLA-A*02:01 B2M MHCI GLCTLVAML BLMF1 EBV PMID:34811538 tetramer-sort yes amplicon-seq effector memory T cells T1D T1D_2 chip0420_607882 PBMC +297 CAANDTDKLIF TRAV8-1*01 TRAJ34*01 CASSEGFNTYEQYF TRBV6-1*01 TRBJ2-7*01 HLA-A*02:01 B2M MHCI YVLDHLIVV BRLF1 EBV PMID:34811538 tetramer-sort yes amplicon-seq effector memory T cells T1D T1D_2 chip0420_819409 PBMC +298 CAVKRRAAGNKLTF TRAV12-2*01 TRAJ17*01 CASTDTLRLINTGELFF TRBV28*01 TRBJ2-2*01 HLA-A*02:01 B2M MHCI YVLDHLIVV BRLF1 EBV PMID:34811538 tetramer-sort yes amplicon-seq effector T cells T1D T1D_2 chip0420_765148 PBMC +299 CASSEGFNTYEQYF TRBV6-1*01 TRBJ2-7*01 HLA-A*02:01 B2M MHCI YVLDHLIVV BRLF1 EBV PMID:34811538 tetramer-sort yes amplicon-seq effector memory T cells T1D T1D_2 chip0420_237055 PBMC +302 CASSSGLVAPGELFF TRBV2*01 TRBJ2-2*01 HLA-A*02:01 B2M MHCI GLCTLVAML BLMF1 EBV PMID:34811538 tetramer-sort yes amplicon-seq effector memory T cells T1D T1D_2 chip0420_818632 PBMC +303 CALKNTGQLLF TRAV16*01 TRAJ34*01 CASSLSVLSYNEQFF TRBV27*01 TRBJ2-1*01 HLA-A*02:01 B2M MHCI YVLDHLIVV BRLF1 EBV PMID:34811538 tetramer-sort yes amplicon-seq effector T cells T1D T1D_2 chip0420_661030 PBMC +304 CAAYAGNMLTF TRAV29/DV5*01 TRAJ39*01 CASRMGAGDTQYF TRBV10-2*01 TRBJ2-3*01 HLA-A*02:01 B2M MHCI GLCTLVAML BLMF1 EBV PMID:34811538 tetramer-sort yes amplicon-seq effector memory T cells T1D T1D_2 chip0420_336705 PBMC +306 CAGNYGGSQGNLIF TRAV25*01 TRAJ42*01 CASSKRSTDTQYF TRBV19*01 TRBJ2-3*01 HLA-A*02:01 B2M MHCI GILGFVFTL M1 InfluenzaA PMID:34811538 tetramer-sort yes amplicon-seq transitional T cells between effector and memory populations T1D T1D_1 chip0420_708028 PBMC +307 CAMREGTGNFNKFYS TRAV14/DV4*01 TRAJ21*01 CASKGIDGYTF TRBV13*01 TRBJ1-2*01 HLA-A*02:01 B2M MHCI YVLDHLIVV BRLF1 EBV PMID:34811538 tetramer-sort yes amplicon-seq effector T cells T1D T1D_2 chip0420_164083 PBMC +309 CASSPVSGSTYEQYF TRBV3-1*01 TRBJ2-7*01 HLA-A*02:01 B2M MHCI GLCTLVAML BLMF1 EBV PMID:34811538 tetramer-sort yes amplicon-seq effector memory T cells T1D T1D_1 chip0420_108423 PBMC +310 CASRMGAGDTQYF TRBV10-2*01 TRBJ2-3*01 HLA-A*02:01 B2M MHCI GLCTLVAML BLMF1 EBV PMID:34811538 tetramer-sort yes amplicon-seq effector memory T cells T1D T1D_2 chip0420_479462 PBMC +311 CSVGTGGTNEKLFF TRBV29-1*01 TRBJ1-4*01 HLA-A*02:01 B2M MHCI GLCTLVAML BLMF1 EBV PMID:34811538 tetramer-sort yes amplicon-seq effector memory T cells T1D T1D_2 chip0420_74124 PBMC +312 CVVNGRDSSYKLIF TRAV12-1*01 TRAJ12*01 CASSSGLVAPGELFF TRBV2*01 TRBJ2-2*01 HLA-A*02:01 B2M MHCI GLCTLVAML BLMF1 EBV PMID:34811538 tetramer-sort yes amplicon-seq effector memory T cells T1D T1D_2 chip0420_769030 PBMC +313 CAESTSGGKLIF TRAV5*01 TRAJ23*01 CSVGSRGTNEKLFF TRBV29-1*01 TRBJ1-4*01 HLA-A*02:01 B2M MHCI GLCTLVAML BLMF1 EBV PMID:34811538 tetramer-sort yes amplicon-seq effector memory T cells T1D T1D_1 chip0420_793885 PBMC +314 LCQQRS??aGNEQFF TRBV9*01 TRBJ2-1*01 HLA-A*02:01 B2M MHCI GLCTLVAML BLMF1 EBV PMID:34811538 tetramer-sort yes amplicon-seq effector memory T cells T1D T1D_2 chip0420_87757 PBMC +315 CASSVRAGETQYF TRBV19*01 TRBJ2-5*01 HLA-A*02:01 B2M MHCI GILGFVFTL M1 InfluenzaA PMID:34811538 tetramer-sort yes amplicon-seq transitional T cells between effector and memory populations T1D T1D_1 chip0420_572383 PBMC +316 CGTEEPNDYKLSF TRAV30*01 TRAJ20*01 HLA-A*02:01 B2M MHCI GLCTLVAML BLMF1 EBV PMID:34811538 tetramer-sort yes amplicon-seq effector T cells T1D T1D_1 chip0420_469339 PBMC +317 GALRKTDKLIF TRAV16*01 TRAJ34*01 CASSLSVLSYNEQFF TRBV27*01 TRBJ2-1*01 HLA-A*02:01 B2M MHCI YVLDHLIVV BRLF1 EBV PMID:34811538 tetramer-sort yes amplicon-seq effector memory T cells T1D T1D_2 chip0420_183780 PBMC +318 CSVGSRGTNEKLFF TRBV29-1*01 TRBJ1-4*01 HLA-A*02:01 B2M MHCI GLCTLVAML BLMF1 EBV PMID:34811538 tetramer-sort yes amplicon-seq effector memory T cells T1D T1D_1 chip0420_35512 PBMC +319 CAVRDDRDDKIIF TRAV3*01 TRAJ30*01 CASSLNAGEWYGYTF TRBV11-2*01 TRBJ1-2*01 HLA-A*02:01 B2M MHCI GLCTLVAML BLMF1 EBV PMID:34811538 tetramer-sort yes amplicon-seq effector T cells T1D T1D_2 chip0420_374145 PBMC +320 CASNLAGNNEQFF TRBV9*01 TRBJ2-1*01 HLA-A*02:01 B2M MHCI GLCTLVAML BLMF1 EBV PMID:34811538 tetramer-sort yes amplicon-seq effector memory T cells T1D T1D_2 chip0420_196807 PBMC +321 CGPEEPNDYKLSF TRAV30*01 TRAJ20*01 CASSPGQLSNTGELFF TRBV9*01 TRBJ2-2*01 HLA-A*02:01 B2M MHCI GLCTLVAML BLMF1 EBV PMID:34811538 tetramer-sort yes amplicon-seq effector memory T cells T1D T1D_1 chip0420_149533 PBMC +322 CSVGTGGTNEKLFF TRBV29-1*01 TRBJ1-4*01 HLA-A*02:01 B2M MHCI GLCTLVAML BLMF1 EBV PMID:34811538 tetramer-sort yes amplicon-seq effector memory T cells T1D T1D_2 chip0420_30414 PBMC +323 CAESTSGGKLIF TRAV5*01 TRAJ23*01 CSVGTGGTNEKLFF TRBV29-1*01 TRBJ1-4*01 HLA-A*02:01 B2M MHCI GLCTLVAML BLMF1 EBV PMID:34811538 tetramer-sort yes amplicon-seq effector memory T cells T1D T1D_2 chip0420_198523 PBMC +324 CVVNGRDSSYKLIF TRAV12-1*01 TRAJ12*01 CASSSGLVAPGELFF TRBV2*01 TRBJ2-2*01 HLA-A*02:01 B2M MHCI GLCTLVAML BLMF1 EBV PMID:34811538 tetramer-sort yes amplicon-seq effector memory T cells T1D T1D_2 chip0420_191693 PBMC +325 CASSEGFNTYEQYF TRBV6-1*01 TRBJ2-7*01 HLA-A*02:01 B2M MHCI YVLDHLIVV BRLF1 EBV PMID:34811538 tetramer-sort yes amplicon-seq effector T cells T1D T1D_2 chip0420_827705 PBMC +326 CSVGTGGTNEKLFF TRBV29-1*01 TRBJ1-4*01 HLA-A*02:01 B2M MHCI GLCTLVAML BLMF1 EBV PMID:34811538 tetramer-sort yes amplicon-seq effector memory T cells T1D T1D_2 chip0420_821860 PBMC +327 CGTQENDSWGKLQF TRAV30*01 TRAJ24*01 CASSVRAGETQYF TRBV19*01 TRBJ2-5*01 HLA-A*02:01 B2M MHCI GILGFVFTL M1 InfluenzaA PMID:34811538 tetramer-sort yes amplicon-seq transitional T cells between effector and memory populations T1D T1D_1 chip0420_117353 PBMC +328 CSVGTGGTNEKLFF TRBV29-1*01 TRBJ1-4*01 HLA-A*02:01 B2M MHCI GLCTLVAML BLMF1 EBV PMID:34811538 tetramer-sort yes amplicon-seq effector T cells T1D T1D_2 chip0420_100395 PBMC +329 CASRALLGSNQPQHF TRBV19*01 TRBJ1-5*01 HLA-A*02:01 B2M MHCI YVLDHLIVV BRLF1 EBV PMID:34811538 tetramer-sort yes amplicon-seq effector memory T cells T1D T1D_2 chip0420_594434 PBMC +330 CAESTSGGKLIF TRAV5*01 TRAJ23*01 CSVGTGGTNEKLFF TRBV29-1*01 TRBJ1-4*01 HLA-A*02:01 B2M MHCI GLCTLVAML BLMF1 EBV PMID:34811538 tetramer-sort yes amplicon-seq effector memory T cells T1D T1D_2 chip0420_303889 PBMC +331 CGPAAPNDYKLSF TRAV30*01 TRAJ20*01 CSVGTGGTNEKLFF TRBV29-1*01 TRBJ1-4*01 HLA-A*02:01 B2M MHCI GLCTLVAML BLMF1 EBV PMID:34811538 tetramer-sort yes amplicon-seq effector memory T cells T1D T1D_2 chip0420_469222 PBMC +333 CAVNGNDKIIF TRAV8-1*01 TRAJ30*01 HLA-A*02:01 B2M MHCI YVLDHLIVV BRLF1 EBV PMID:34811538 tetramer-sort yes amplicon-seq effector memory T cells T1D T1D_2 chip0420_450610 PBMC +334 CSVGSRGTNEKLFF TRBV29-1*01 TRBJ1-4*01 HLA-A*02:01 B2M MHCI GLCTLVAML BLMF1 EBV PMID:34811538 tetramer-sort yes amplicon-seq effector memory T cells T1D T1D_1 chip0420_816389 PBMC +335 CASSVQGGNYGYTF TRBV6-1*01 TRBJ1-2*01 HLA-A*02:01 B2M MHCI FLYALALLL LMP2 EBV PMID:34811538 tetramer-sort yes amplicon-seq central memory T cells T1D T1D_1 chip0420_609636 PBMC +336 CSVGSRGTNEKLFF TRBV29-1*01 TRBJ1-4*01 HLA-A*02:01 B2M MHCI GLCTLVAML BLMF1 EBV PMID:34811538 tetramer-sort yes amplicon-seq effector memory T cells T1D T1D_1 chip0420_540176 PBMC +337 CAVRMYSGGGADGLTF TRAV12-2*01 TRAJ45*01 CASSPGDFQETQYF TRBV9*01 TRBJ2-5*01 HLA-A*02:01 B2M MHCI ALAGIGILTV MART1 HomoSapiens PMID:34811538 tetramer-sort yes amplicon-seq Naive T cells T1D T1D_1 chip0420_195602 PBMC +338 CSVGTGGTNEKLFF TRBV29-1*01 TRBJ1-4*01 HLA-A*02:01 B2M MHCI GLCTLVAML BLMF1 EBV PMID:34811538 tetramer-sort yes amplicon-seq effector memory T cells T1D T1D_2 chip0420_351531 PBMC +340 CASSTGQPQHF TRBV19*01 TRBJ1-5*01 HLA-A*02:01 B2M MHCI GILGFVFTL M1 InfluenzaA PMID:34811538 tetramer-sort yes amplicon-seq transitional T cells between effector and memory populations T1D T1D_1 chip0420_109837 PBMC +341 CAEKAWgg??gtYQQVTF TRAV5*01 TRAJ13*01 CSVGTGGTNEKLFF TRBV29-1*01 TRBJ1-4*01 HLA-A*02:01 B2M MHCI GLCTLVAML BLMF1 EBV PMID:34811538 tetramer-sort yes amplicon-seq effector memory T cells T1D T1D_2 chip0420_286485 PBMC +343 CASLTPGASKIIF TRAV8-6*01 TRAJ3*01 CASSSGLVAPGELFF TRBV2*01 TRBJ2-2*01 HLA-A*02:01 B2M MHCI GLCTLVAML BLMF1 EBV PMID:34811538 tetramer-sort yes amplicon-seq effector memory T cells T1D T1D_2 chip0420_872360 PBMC +344 CSVGTGGTNEKLFF TRBV29-1*01 TRBJ1-4*01 HLA-A*02:01 B2M MHCI GLCTLVAML BLMF1 EBV PMID:34811538 tetramer-sort yes amplicon-seq effector T cells T1D T1D_2 chip0420_507026 PBMC +345 CGTEEPNDYKLSF TRAV30*01 TRAJ20*01 HLA-A*02:01 B2M MHCI GLCTLVAML BLMF1 EBV PMID:34811538 tetramer-sort yes amplicon-seq effector T cells T1D T1D_1 chip0420_450851 PBMC +346 CAVRGARLMF TRAV12-2*01 TRAJ31*01 CASSQWVRRRSQETQYF TRBV4-3*01 TRBJ2-5*01 HLA-A*02:01 B2M MHCI ILSAHVATA ZNT8 HomoSapiens PMID:34811538 tetramer-sort yes amplicon-seq Naive T cells T1D T1D_1 chip0420_203142 PBMC +347 CSVGTGGTNEKLFF TRBV29-1*01 TRBJ1-4*01 HLA-A*02:01 B2M MHCI GLCTLVAML BLMF1 EBV PMID:34811538 tetramer-sort yes amplicon-seq effector memory T cells T1D T1D_2 chip0420_620638 PBMC +349 CASSQSPGGTQYF TRBV14*01 TRBJ2-3*01 HLA-A*02:01 B2M MHCI GLCTLVAML BLMF1 EBV PMID:34811538 tetramer-sort yes amplicon-seq effector memory T cells T1D T1D_1 chip0420_589477 PBMC +350 CSVGTGGTNEKLFF TRBV29-1*01 TRBJ1-4*01 HLA-A*02:01 B2M MHCI GLCTLVAML BLMF1 EBV PMID:34811538 tetramer-sort yes amplicon-seq effector memory T cells T1D T1D_2 chip0420_702996 PBMC +351 CASSPSTSGSGETQYF TRBV3-1*01 TRBJ2-5*01 HLA-A*02:01 B2M MHCI YVLDHLIVV BRLF1 EBV PMID:34811538 tetramer-sort yes amplicon-seq effector memory T cells T1D T1D_2 chip0420_804721 PBMC +352 CASRAGAGDTQYF TRBV10-2*01 TRBJ2-3*01 HLA-A*02:01 B2M MHCI GLCTLVAML BLMF1 EBV PMID:34811538 tetramer-sort yes amplicon-seq effector memory T cells T1D T1D_2 chip0420_325040 PBMC +353 CARGGLSGGGSEAFF TRAV24*01 TRAJ40*01 CASRGLTGGGSEAFF TRBV28*01 TRBJ1-1*01 HLA-A*02:01 B2M MHCI YVLDHLIVV BRLF1 EBV PMID:34811538 tetramer-sort yes amplicon-seq effector memory T cells T1D T1D_1 chip0420_589491 PBMC +354 CVVNPPHDYKLSF TRAV12-1*01 TRAJ20*01 HLA-A*02:01 B2M MHCI GLCTLVAML BLMF1 EBV PMID:34811538 tetramer-sort yes amplicon-seq effector memory T cells T1D T1D_2 chip0420_208994 PBMC +355 CVVNGRDSSYKLIF TRAV12-1*01 TRAJ12*01 CASSSGLVAPGELFF TRBV2*01 TRBJ2-2*01 HLA-A*02:01 B2M MHCI GLCTLVAML BLMF1 EBV PMID:34811538 tetramer-sort yes amplicon-seq effector T cells T1D T1D_2 chip0420_331547 PBMC +356 CAESTSGGKLIF TRAV5*01 TRAJ23*01 CSVGTGGTNEKLFF TRBV29-1*01 TRBJ1-4*01 HLA-A*02:01 B2M MHCI GLCTLVAML BLMF1 EBV PMID:34811538 tetramer-sort yes amplicon-seq effector T cells T1D T1D_2 chip0420_593829 PBMC +357 CASSTGQLSNTGELFF TRBV9*01 TRBJ2-2*01 HLA-A*02:01 B2M MHCI GLCTLVAML BLMF1 EBV PMID:34811538 tetramer-sort yes amplicon-seq effector memory T cells T1D T1D_1 chip0420_281105 PBMC +358 CASSQSPGGTQYF TRBV14*01 TRBJ2-3*01 HLA-A*02:01 B2M MHCI GLCTLVAML BLMF1 EBV PMID:34811538 tetramer-sort yes amplicon-seq effector memory T cells T1D T1D_1 chip0420_28492 PBMC +360 CAVKDTDKLIF TRAV8-1*01 TRAJ34*01 HLA-A*02:01 B2M MHCI YVLDHLIVV BRLF1 EBV PMID:34811538 tetramer-sort yes amplicon-seq effector memory T cells T1D T1D_1 chip0420_362723 PBMC +361 CAVPDTDKLIF TRAV8-1*01 TRAJ34*01 HLA-A*02:01 B2M MHCI YVLDHLIVV BRLF1 EBV PMID:34811538 tetramer-sort yes amplicon-seq effector memory T cells T1D T1D_2 chip0420_8425 PBMC +362 RALPPTPQLLS TRAV9-2*01 TRAJ34*01 CASSPVSGSTYEQYF TRBV3-1*01 TRBJ2-7*01 HLA-A*02:01 B2M MHCI GLCTLVAML BLMF1 EBV PMID:34811538 tetramer-sort yes amplicon-seq effector memory T cells T1D T1D_1 chip0420_130293 PBMC +363 CAVPGFSGGYNKLIF TRAV8-1*01 TRAJ4*01 HLA-A*02:01 B2M MHCI YLLEMLWRL LMP1 EBV PMID:34811538 tetramer-sort yes amplicon-seq central memory T cells T1D T1D_1 chip0420_847041 PBMC +364 CSVGTGG??aTTEQLFS TRBV29-1*01 TRBJ1-4*01 HLA-A*02:01 B2M MHCI GLCTLVAML BLMF1 EBV PMID:34811538 tetramer-sort yes amplicon-seq effector T cells T1D T1D_2 chip0420_683292 PBMC +365 CGPAEPNDYKLSF TRAV30*01 TRAJ20*01 CASRPGQLSNTGELFF TRBV9*01 TRBJ2-2*01 HLA-A*02:01 B2M MHCI GLCTLVAML BLMF1 EBV PMID:34811538 tetramer-sort yes amplicon-seq effector T cells T1D T1D_1 chip0420_459919 PBMC +366 CASRMGAGDTQYF TRBV10-2*01 TRBJ2-3*01 HLA-A*02:01 B2M MHCI GLCTLVAML BLMF1 EBV PMID:34811538 tetramer-sort yes amplicon-seq effector memory T cells T1D T1D_2 chip0420_43164 PBMC +368 CASSLEASYEQYF TRBV7-8*01 TRBJ2-7*01 HLA-A*02:01 B2M MHCI ALGIGILTV MART1 HomoSapiens PMID:34811538 tetramer-sort yes amplicon-seq effector T cells T1D T1D_2 chip0420_835590 PBMC +369 CASKMGLDASYNEQFF TRBV27*01 TRBJ2-1*01 HLA-A*02:01 B2M MHCI ALAGIGILTV MART1 HomoSapiens PMID:34811538 tetramer-sort yes amplicon-seq Naive T cells T1D T1D_2 chip0420_361220 PBMC +370 CASSLFGTSDYEQYF TRBV13*01 TRBJ2-7*01 HLA-A*02:01 B2M MHCI VMNILLQYV GAD65 HomoSapiens PMID:34811538 tetramer-sort yes amplicon-seq effector T cells T1D T1D_2 chip0420_281359 PBMC +371 CASSIFGGTNYGYTF TRBV19*01 TRBJ1-2*01 HLA-A*02:01 B2M MHCI YVLDHLIVV BRLF1 EBV PMID:34811538 tetramer-sort yes amplicon-seq effector memory T cells T1D T1D_1 chip0420_642096 PBMC +372 CAESTSGGKLIF TRAV5*01 TRAJ23*01 CSVGTGGTNEKLFF TRBV29-1*01 TRBJ1-4*01 HLA-A*02:01 B2M MHCI GLCTLVAML BLMF1 EBV PMID:34811538 tetramer-sort yes amplicon-seq effector memory T cells T1D T1D_2 chip0420_228361 PBMC +373 CASSQELgg?VMNTEAFF TRBV4-3*01 TRBJ1-1*01 HLA-A*02:01 B2M MHCI YVLDHLIVV BRLF1 EBV PMID:34811538 tetramer-sort yes amplicon-seq effector memory T cells T1D T1D_2 chip0420_320147 PBMC +375 CASSPDQTSSYNEQFF TRBV27*01 TRBJ2-1*01 HLA-A*02:01 B2M MHCI YVLDHLIVV BRLF1 EBV PMID:34811538 tetramer-sort yes amplicon-seq effector memory T cells T1D T1D_1 chip0420_730402 PBMC +376 CAVDPWGNQFYF TRAV39*01 TRAJ49*01 CATQQGRDSQPQHF TRBV28*01 TRBJ1-5*01 HLA-A*02:01 B2M MHCI GLCTLVAML BLMF1 EBV PMID:34811538 tetramer-sort yes amplicon-seq effector memory T cells T1D T1D_1 chip0420_691623 PBMC +377 CSVGSRGTNEKLFF TRBV29-1*01 TRBJ1-4*01 HLA-A*02:01 B2M MHCI GLCTLVAML BLMF1 EBV PMID:34811538 tetramer-sort yes amplicon-seq effector memory T cells T1D T1D_1 chip0420_682552 PBMC +378 CAVKRRAAGNKLTF TRAV12-2*01 TRAJ17*01 CASTDTLSLINTGELFF TRBV28*01 TRBJ2-2*01 HLA-A*02:01 B2M MHCI YVLDHLIVV BRLF1 EBV PMID:34811538 tetramer-sort yes amplicon-seq effector T cells T1D T1D_2 chip0420_92111 PBMC +379 CSVDQRTGQKKNYGYTF TRBV29-1*01 TRBJ1-2*01 HLA-A*02:01 B2M MHCI GLCTLVAML BLMF1 EBV PMID:34811538 tetramer-sort yes amplicon-seq effector memory T cells T1D T1D_2 chip0420_665639 PBMC +380 CSVGTGGTNEKLFF TRBV29-1*01 TRBJ1-4*01 HLA-A*02:01 B2M MHCI GLCTLVAML BLMF1 EBV PMID:34811538 tetramer-sort yes amplicon-seq effector T cells T1D T1D_2 chip0420_461344 PBMC +381 RVVNGRDSSYKLVF TRAV12-1*01 TRAJ12*01 CASSSGLVAPGELFF TRBV2*01 TRBJ2-2*01 HLA-A*02:01 B2M MHCI GLCTLVAML BLMF1 EBV PMID:34811538 tetramer-sort yes amplicon-seq effector memory T cells T1D T1D_2 chip0420_579860 PBMC +382 CARSIFAADTQYF TRBV19*01 TRBJ2-3*01 HLA-A*02:01 B2M MHCI GILGFVFTL M1 InfluenzaA PMID:34811538 tetramer-sort yes amplicon-seq transitional T cells between effector and memory populations T1D T1D_1 chip0420_462292 PBMC +383 CASSVKAGETQYF TRBV19*01 TRBJ2-5*01 HLA-A*02:01 B2M MHCI GILGFVFTL M1 InfluenzaA PMID:34811538 tetramer-sort yes amplicon-seq transitional T cells between effector and memory populations T1D T1D_1 chip0420_39512 PBMC +384 CAVKDTDKLIF TRAV8-1*01 TRAJ34*01 HLA-A*02:01 B2M MHCI YVLDHLIVV BRLF1 EBV PMID:34811538 tetramer-sort yes amplicon-seq effector memory T cells T1D T1D_2 chip0420_24662 PBMC +385 CSVGSRGTNEKLFF TRBV29-1*01 TRBJ1-4*01 HLA-A*02:01 B2M MHCI GLCTLVAML BLMF1 EBV PMID:34811538 tetramer-sort yes amplicon-seq effector memory T cells T1D T1D_1 chip0420_679566 PBMC +386 CAVNNSSNTGKLIF TRAV12-2*01 TRAJ37*01 HLA-A*02:01 B2M MHCI YVLDHLIVV BRLF1 EBV PMID:34811538 tetramer-sort yes amplicon-seq effector memory T cells T1D T1D_1 chip0420_324686 PBMC +388 CAVSEP*a?tNNARLMF TRAV8-6*01 TRAJ31*01 CASRMGAGDTQYF TRBV10-2*01 TRBJ2-3*01 HLA-A*02:01 B2M MHCI YVLDHLIVV BRLF1 EBV PMID:34811538 tetramer-sort yes amplicon-seq effector memory T cells T1D T1D_2 chip0420_458830 PBMC +389 CVVNGGDSSYKLIF TRAV12-1*01 TRAJ12*01 CASSSGQVLPNEQFF TRBV2*01 TRBJ2-1*01 HLA-A*02:01 B2M MHCI GLCTLVAML BLMF1 EBV PMID:34811538 tetramer-sort yes amplicon-seq effector memory T cells T1D T1D_1 chip0420_455145 PBMC +390 CASSPDRTSSYNEQFF TRBV27*01 TRBJ2-1*01 HLA-A*02:01 B2M MHCI YVLDHLIVV BRLF1 EBV PMID:34811538 tetramer-sort yes amplicon-seq effector memory T cells T1D T1D_1 chip0420_145935 PBMC +391 CSVGGSFYGYTF TRBV29-1*01 TRBJ1-2*01 HLA-A*02:01 B2M MHCI GLCTLVAML BLMF1 EBV PMID:34811538 tetramer-sort yes amplicon-seq effector memory T cells T1D T1D_2 chip0420_465091 PBMC +392 CSVGTGGTNEKLFF TRBV29-1*01 TRBJ1-4*01 HLA-A*02:01 B2M MHCI GLCTLVAML BLMF1 EBV PMID:34811538 tetramer-sort yes amplicon-seq effector memory T cells T1D T1D_2 chip0420_509518 PBMC +393 CAASGGSQGNLIF TRAV29/DV5*01 TRAJ42*01 CSTQEGGYGYTF TRBV29-1*01 TRBJ1-2*01 HLA-A*02:01 B2M MHCI GLCTLVAML BLMF1 EBV PMID:34811538 tetramer-sort yes amplicon-seq effector memory T cells T1D T1D_1 chip0420_859245 PBMC +394 CSVGTGGTNEKLFF TRBV29-1*01 TRBJ1-4*01 HLA-A*02:01 B2M MHCI GLCTLVAML BLMF1 EBV PMID:34811538 tetramer-sort yes amplicon-seq effector memory T cells T1D T1D_2 chip0420_226101 PBMC +395 CASSEDGMNTEAFF TRBV10-2*01 TRBJ1-1*01 HLA-A*02:01 B2M MHCI CLGGLLTMV LMP2A EBV PMID:34811538 tetramer-sort yes amplicon-seq effector memory T cells T1D T1D_2 chip0420_658449 PBMC +396 CAVNRGYSTLTF TRAV12-2*01 TRAJ11*01 CSPSGGPPKANEQFF TRBV29-1*01 TRBJ2-1*01 HLA-A*02:01 B2M MHCI LLAGIGTVPI PGT HomoSapiens PMID:34811538 tetramer-sort yes amplicon-seq Naive T cells T1D T1D_2 chip0420_117917 PBMC +397 CSVGTGGTNEKLFF TRBV29-1*01 TRBJ1-4*01 HLA-A*02:01 B2M MHCI GLCTLVAML BLMF1 EBV PMID:34811538 tetramer-sort yes amplicon-seq effector memory T cells T1D T1D_2 chip0420_208609 PBMC +398 CASSPHLGAAAEQYF TRBV19*01 TRBJ2-7*01 HLA-A*02:01 B2M MHCI YVLDHLIVV BRLF1 EBV PMID:34811538 tetramer-sort yes amplicon-seq effector memory T cells T1D T1D_1 chip0420_220877 PBMC +399 CILRRYGGSQGNLIF TRAV26-2*01 TRAJ42*01 HLA-A*02:01 B2M MHCI GLCTLVAML BLMF1 EBV PMID:34811538 tetramer-sort yes amplicon-seq effector memory T cells T1D T1D_1 chip0420_322026 PBMC +400 CALKNTDKLIF TRAV16*01 TRAJ34*01 CASSQSRGSLWDTQYF TRBV4-3*01 TRBJ2-3*01 HLA-A*02:01 B2M MHCI YVLDHLIVV BRLF1 EBV PMID:34811538 tetramer-sort yes amplicon-seq effector T cells T1D T1D_2 chip0420_18133 PBMC +401 CSVGTGGTNEKLFF TRBV29-1*01 TRBJ1-4*01 HLA-A*02:01 B2M MHCI GLCTLVAML BLMF1 EBV PMID:34811538 tetramer-sort yes amplicon-seq effector memory T cells T1D T1D_2 chip0420_650726 PBMC +402 CASSPVSGSTYEQYF TRBV3-1*01 TRBJ2-7*01 HLA-A*02:01 B2M MHCI GLCTLVAML BLMF1 EBV PMID:34811538 tetramer-sort yes amplicon-seq effector memory T cells T1D T1D_1 chip0420_613888 PBMC +403 CASSPSPGGPQYF TRBV14*01 TRBJ2-3*01 HLA-A*02:01 B2M MHCI GLCTLVAML BLMF1 EBV PMID:34811538 tetramer-sort yes amplicon-seq effector memory T cells T1D T1D_1 chip0420_865051 PBMC +404 CAEDNNARLMF TRAV29/DV5*01,TRAV5*01 TRAJ31*01 CSVDQRTGQKKNYGYTF TRBV29-1*01 TRBJ1-2*01 HLA-A*02:01 B2M MHCI GLCTLVAML BLMF1 EBV PMID:34811538 tetramer-sort yes amplicon-seq effector T cells T1D T1D_2 chip0420_846516 PBMC +405 CASSVGVLSAGELFF TRBV9*01 TRBJ2-2*01 HLA-A*02:01 B2M MHCI GLCTLVAML BLMF1 EBV PMID:34811538 tetramer-sort yes amplicon-seq effector memory T cells T1D T1D_2 chip0420_262593 PBMC +406 CADLDCW??cNHRKLIW TRAV36/DV7*01 TRAJ38*01 CASSTGQLSNTGELFF TRBV9*01 TRBJ2-2*01 HLA-A*02:01 B2M MHCI GLCTLVAML BLMF1 EBV PMID:34811538 tetramer-sort yes amplicon-seq effector memory T cells T1D T1D_1 chip0420_222781 PBMC +407 CAEKAWgg??gtYQKVTF TRAV5*01 TRAJ13*01 CSVGTGGTNEKLFF TRBV29-1*01 TRBJ1-4*01 HLA-A*02:01 B2M MHCI GLCTLVAML BLMF1 EBV PMID:34811538 tetramer-sort yes amplicon-seq effector T cells T1D T1D_2 chip0420_354900 PBMC +408 CAAYAGNMLTF TRAV29/DV5*01 TRAJ39*01 CASRMGAGDTQYF TRBV10-2*01 TRBJ2-3*01 HLA-A*02:01 B2M MHCI GLCTLVAML BLMF1 EBV PMID:34811538 tetramer-sort yes amplicon-seq central memory T cells T1D T1D_2 chip0420_593909 PBMC +409 CVVNEGDSSYKLIF TRAV12-1*01 TRAJ12*01 CASSSGQVLPNEQFF TRBV2*01 TRBJ2-1*01 HLA-A*02:01 B2M MHCI YVLDHLIVV BRLF1 EBV PMID:34811538 tetramer-sort yes amplicon-seq effector memory T cells T1D T1D_1 chip0420_109703 PBMC +410 CAVNSRGGNQFYF TRAV12-2*01 TRAJ49*01 CASSYWSNNEQFF TRBV6-5*01 TRBJ2-1*01 HLA-A*02:01 B2M MHCI LLAGIGTVPI PGT HomoSapiens PMID:34811538 tetramer-sort yes amplicon-seq Naive T cells T1D T1D_1 chip0420_34074 PBMC +411 CSVGTGGTNEKLFF TRBV29-1*01 TRBJ1-4*01 HLA-A*02:01 B2M MHCI GLCTLVAML BLMF1 EBV PMID:34811538 tetramer-sort yes amplicon-seq effector memory T cells T1D T1D_2 chip0420_853215 PBMC +412 CIL*CYGGSQGNLIF TRAV26-2*01 TRAJ42*01 HLA-A*02:01 B2M MHCI GLCTLVAML BLMF1 EBV PMID:34811538 tetramer-sort yes amplicon-seq effector memory T cells T1D T1D_1 chip0420_244229 PBMC +413 CASSQSPGGTQYF TRBV14*01 TRBJ2-3*01 HLA-A*02:01 B2M MHCI GLCTLVAML BLMF1 EBV PMID:34811538 tetramer-sort yes amplicon-seq effector memory T cells T1D T1D_1 chip0420_337352 PBMC +414 CAMDGPSGYSTLTF TRAV17*01 TRAJ11*01 CAGRRQGGKDGYTF TRBV6-1*01 TRBJ1-2*01 HLA-A*02:01 B2M MHCI FLYALALLL LMP2 EBV PMID:34811538 tetramer-sort yes amplicon-seq central memory T cells T1D T1D_2 chip0420_427706 PBMC +415 CASSHQASEQYF TRBV10-1*01 TRBJ2-7*01 HLA-A*02:01 B2M MHCI YVLDHLIVV BRLF1 EBV PMID:34811538 tetramer-sort yes amplicon-seq effector memory T cells T1D T1D_2 chip0420_866201 PBMC +417 CSVTTDRNSNQPQHF TRBV29-1*01 TRBJ1-5*01 HLA-A*02:01 B2M MHCI GLCTLVAML BLMF1 EBV PMID:34811538 tetramer-sort yes amplicon-seq effector memory T cells T1D T1D_1 chip0420_166340 PBMC +418 CSARADTGNGYTF TRBV20-1*01 TRBJ1-2*01 HLA-A*02:01 B2M MHCI GLCTLVAML BLMF1 EBV PMID:34811538 tetramer-sort yes amplicon-seq effector memory T cells T1D T1D_1 chip0420_556642 PBMC +419 CAPGSSASTLLF TRAV12-2*01 TRAJ3*01 CASSDGTGELFF TRBV2*01 TRBJ2-2*01 HLA-A*02:01 B2M MHCI ALWMRLLPL PREINS HomoSapiens PMID:34811538 tetramer-sort yes amplicon-seq transitional T cells between effector and memory populations T1D T1D_2 chip0420_280918 PBMC +420 CALKNTDKLIF TRAV16*01 TRAJ34*01 CASSLSVLSYNEQFF TRBV27*01 TRBJ2-1*01 HLA-A*02:01 B2M MHCI YVLDHLIVV BRLF1 EBV PMID:34811538 tetramer-sort yes amplicon-seq effector memory T cells T1D T1D_2 chip0420_648745 PBMC +421 CASRAGAGDTQYF TRBV10-2*01 TRBJ2-3*01 HLA-A*02:01 B2M MHCI GLCTLVAML BLMF1 EBV PMID:34811538 tetramer-sort yes amplicon-seq effector memory T cells T1D T1D_2 chip0420_71424 PBMC +422 CASSIPGGGADTGELFF TRBV9*01 TRBJ2-2*01 HLA-A*02:01 B2M MHCI GLCTLVAML BLMF1 EBV PMID:34811538 tetramer-sort yes amplicon-seq effector memory T cells T1D T1D_1 chip0420_488067 PBMC +425 CSVGSRGTNEKLFF TRBV29-1*01 TRBJ1-4*01 HLA-A*02:01 B2M MHCI GLCTLVAML BLMF1 EBV PMID:34811538 tetramer-sort yes amplicon-seq effector memory T cells T1D T1D_1 chip0420_520190 PBMC +426 CAESTSGGRLIF TRAV5*01 TRAJ23*01 CSVGTGGTNEKLFF TRBV29-1*01 TRBJ1-4*01 HLA-A*02:01 B2M MHCI GLCTLVAML BLMF1 EBV PMID:34811538 tetramer-sort yes amplicon-seq effector memory T cells T1D T1D_2 chip0420_37569 PBMC +427 CAVGDTDKLIF TRAV8-1*01 TRAJ34*01 CASRANLGSNQPQHF TRBV19*01 TRBJ1-5*01 HLA-A*02:01 B2M MHCI YVLDHLIVV BRLF1 EBV PMID:34811538 tetramer-sort yes amplicon-seq effector memory T cells T1D T1D_1 chip0420_590350 PBMC +428 CSVGTGGTNEKLFF TRBV29-1*01 TRBJ1-4*01 HLA-A*02:01 B2M MHCI GLCTLVAML BLMF1 EBV PMID:34811538 tetramer-sort yes amplicon-seq effector memory T cells T1D T1D_2 chip0420_45470 PBMC +429 CAESTSGGKLIF TRAV5*01 TRAJ23*01 CSVGTGGTNEKLFF TRBV29-1*01 TRBJ1-4*01 HLA-A*02:01 B2M MHCI GLCTLVAML BLMF1 EBV PMID:34811538 tetramer-sort yes amplicon-seq transitional T cells between effector and memory populations T1D T1D_2 chip0420_689032 PBMC +430 CASRMGAGDTQYF TRBV10-2*01 TRBJ2-3*01 HLA-A*02:01 B2M MHCI GLCTLVAML BLMF1 EBV PMID:34811538 tetramer-sort yes amplicon-seq effector memory T cells T1D T1D_2 chip0420_451329 PBMC +431 CASSPSTSGSGETQYF TRBV3-1*01 TRBJ2-5*01 HLA-A*02:01 B2M MHCI YVLDHLIVV BRLF1 EBV PMID:34811538 tetramer-sort yes amplicon-seq effector memory T cells T1D T1D_2 chip0420_424112 PBMC +432 CAWTPGQGEIGELFF TRAV27*01 TRAJ4*01 CAWTPGQGEIGELFF TRBV30*01 TRBJ2-2*01 HLA-A*02:01 B2M MHCI LLAGIGTVPI PGT HomoSapiens PMID:34811538 tetramer-sort yes amplicon-seq effector memory T cells T1D T1D_1 chip0420_23667 PBMC +433 CALGGLTF TRAV8-1*01 TRAJ22*01 CASSPSTSGSGETQYF TRBV3-1*01 TRBJ2-5*01 HLA-A*02:01 B2M MHCI YVLDHLIVV BRLF1 EBV PMID:34811538 tetramer-sort yes amplicon-seq effector memory T cells T1D T1D_2 chip0420_372773 PBMC +435 CASLTPGASKIIF TRAV8-6*01 TRAJ3*01 CASSSGLVAPGELFF TRBV2*01 TRBJ2-2*01 HLA-A*02:01 B2M MHCI GLCTLVAML BLMF1 EBV PMID:34811538 tetramer-sort yes amplicon-seq effector memory T cells T1D T1D_2 chip0420_242641 PBMC +436 CAISEGTLSSYNEQFF TRBV10-3*01 TRBJ2-1*01 HLA-A*02:01 B2M MHCI YVLDHLIVV BRLF1 EBV PMID:34811538 tetramer-sort yes amplicon-seq effector memory T cells T1D T1D_1 chip0420_819854 PBMC +437 CASNLAGNNEQFF TRBV9*01 TRBJ2-1*01 HLA-A*02:01 B2M MHCI GLCTLVAML BLMF1 EBV PMID:34811538 tetramer-sort yes amplicon-seq effector memory T cells T1D T1D_2 chip0420_84830 PBMC +438 CSVGTGGTNEKLFF TRBV29-1*01 TRBJ1-4*01 HLA-A*02:01 B2M MHCI GLCTLVAML BLMF1 EBV PMID:34811538 tetramer-sort yes amplicon-seq effector memory T cells T1D T1D_2 chip0420_104677 PBMC +439 CSVGSRGTNEKLFF TRBV29-1*01 TRBJ1-4*01 HLA-A*02:01 B2M MHCI GLCTLVAML BLMF1 EBV PMID:34811538 tetramer-sort yes amplicon-seq effector memory T cells T1D T1D_1 chip0420_517889 PBMC +440 CAMREGTGNFNKFYF TRAV14/DV4*01 TRAJ21*01 CASKGIDGYTF TRBV13*01 TRBJ1-2*01 HLA-A*02:01 B2M MHCI YVLDHLIVV BRLF1 EBV PMID:34811538 tetramer-sort yes amplicon-seq effector T cells T1D T1D_2 chip0420_430214 PBMC +441 CAESTSGGKLIF TRAV5*01 TRAJ23*01 CSVGTGGTNEKLFF TRBV29-1*01 TRBJ1-4*01 HLA-A*02:01 B2M MHCI GLCTLVAML BLMF1 EBV PMID:34811538 tetramer-sort yes amplicon-seq transitional T cells between effector and memory populations T1D T1D_2 chip0420_179171 PBMC +442 CSVDQRTGQKKNYGYTF TRBV29-1*01 TRBJ1-2*01 HLA-A*02:01 B2M MHCI GLCTLVAML BLMF1 EBV PMID:34811538 tetramer-sort yes amplicon-seq effector memory T cells T1D T1D_2 chip0420_126579 PBMC +444 CVVNGGDSSYKLIF TRAV12-1*01 TRAJ12*01 CASSSGQVLPNEQFF TRBV2*01 TRBJ2-1*01 HLA-A*02:01 B2M MHCI GLCTLVAML BLMF1 EBV PMID:34811538 tetramer-sort yes amplicon-seq effector memory T cells T1D T1D_1 chip0420_378528 PBMC +446 CSVDQRTGQKKNYGYTF TRBV29-1*01 TRBJ1-2*01 HLA-A*02:01 B2M MHCI GLCTLVAML BLMF1 EBV PMID:34811538 tetramer-sort yes amplicon-seq effector memory T cells T1D T1D_2 chip0420_487705 PBMC +447 CASSQSPGGTQYF TRBV14*01 TRBJ2-3*01 HLA-A*02:01 B2M MHCI GLCTLVAML BLMF1 EBV PMID:34811538 tetramer-sort yes amplicon-seq effector memory T cells T1D T1D_1 chip0420_590031 PBMC +448 CASSSGLVAPGELFF TRBV2*01 TRBJ2-2*01 HLA-A*02:01 B2M MHCI GLCTLVAML BLMF1 EBV PMID:34811538 tetramer-sort yes amplicon-seq effector memory T cells T1D T1D_2 chip0420_141804 PBMC +449 CALYNTDKLIF TRAV9-2*01 TRAJ34*01 CASSPVSGSTYEQYF TRBV3-1*01 TRBJ2-7*01 HLA-A*02:01 B2M MHCI GLCTLVAML BLMF1 EBV PMID:34811538 tetramer-sort yes amplicon-seq effector memory T cells T1D T1D_1 chip0420_373118 PBMC +450 CAESTtc?GRTLIF TRAV5*01 TRAJ23*01 CSVGTGGTNEKLFF TRBV29-1*01 TRBJ1-4*01 HLA-A*02:01 B2M MHCI GLCTLVAML BLMF1 EBV PMID:34811538 tetramer-sort yes amplicon-seq effector memory T cells T1D T1D_2 chip0420_31974 PBMC +451 CASRAGAGDTQYF TRBV10-2*01 TRBJ2-3*01 HLA-A*02:01 B2M MHCI GLCTLVAML BLMF1 EBV PMID:34811538 tetramer-sort yes amplicon-seq effector T cells T1D T1D_2 chip0420_470650 PBMC +453 CASSRTLAGEKETQYF TRBV14*01 TRBJ2-5*01 HLA-A*02:01 B2M MHCI LLAGIGTVPI PGT HomoSapiens PMID:34811538 tetramer-sort yes amplicon-seq Naive T cells T1D T1D_1 chip0420_76952 PBMC +454 CAASGGSQGNLIF TRAV29/DV5*01 TRAJ42*01 CSTQEGGYGYTF TRBV29-1*01 TRBJ1-2*01 HLA-A*02:01 B2M MHCI GLCTLVAML BLMF1 EBV PMID:34811538 tetramer-sort yes amplicon-seq effector memory T cells T1D T1D_1 chip0420_683224 PBMC +455 CVVIRTGANNLFF TRAV12-1*01 TRAJ36*01 CSVEGGTAYEQYF TRBV29-1*01 TRBJ2-7*01 HLA-A*02:01 B2M MHCI GLCTLVAML BLMF1 EBV PMID:34811538 tetramer-sort yes amplicon-seq effector T cells tet_neg chip0420_649564 PBMC +456 CASSINGGRRDGYTF TRBV19*01 TRBJ1-2*01 HLA-A*02:01 B2M MHCI GILGFVFTL M1 InfluenzaA PMID:34811538 tetramer-sort yes amplicon-seq transitional T cells between effector and memory populations T1D T1D_1 chip0420_647585 PBMC +457 CAVKDTDKLIF TRAV8-1*01 TRAJ34*01 CAWSVQLAGVDEQYF TRBV30*01 TRBJ2-7*01 HLA-A*02:01 B2M MHCI YVLDHLIVV BRLF1 EBV PMID:34811538 tetramer-sort yes amplicon-seq effector memory T cells T1D T1D_2 chip0420_191326 PBMC +458 CAVNALDKLIF TRAV8-1*01 TRAJ34*01 CASSEAFLADNEQFF TRBV6-4*01 TRBJ2-1*01 HLA-A*02:01 B2M MHCI YVLDHLIVV BRLF1 EBV PMID:34811538 tetramer-sort yes amplicon-seq effector memory T cells T1D T1D_1 chip0420_178471 PBMC +459 CASRMGAGDTQYF TRBV10-2*01 TRBJ2-3*01 HLA-A*02:01 B2M MHCI GLCTLVAML BLMF1 EBV PMID:34811538 tetramer-sort yes amplicon-seq effector memory T cells T1D T1D_2 chip0420_612135 PBMC +460 CSVGTGGTNEKLFF TRBV29-1*01 TRBJ1-4*01 HLA-A*02:01 B2M MHCI GLCTLVAML BLMF1 EBV PMID:34811538 tetramer-sort yes amplicon-seq central memory T cells T1D T1D_2 chip0420_551148 PBMC +461 CAVSGGFKTIF TRAV12-2*01 TRAJ9*01 CASMDSNFGNTIYF TRBV2*01 TRBJ1-3*01 HLA-A*02:01 B2M MHCI KLQVFLIVL IAPP HomoSapiens PMID:34811538 tetramer-sort yes amplicon-seq effector T cells T1D T1D_2 chip0420_665085 PBMC +462 CASRAGAGDTQYF TRBV10-2*01 TRBJ2-3*01 HLA-A*02:01 B2M MHCI GLCTLVAML BLMF1 EBV PMID:34811538 tetramer-sort yes amplicon-seq effector memory T cells T1D T1D_2 chip0420_143932 PBMC +463 CVVNPTDKLLF TRAV12-1*01 TRAJ34*01 HLA-A*02:01 B2M MHCI GILGFVFTL M1 InfluenzaA PMID:34811538 tetramer-sort yes amplicon-seq central memory T cells T1D T1D_2 chip0420_665460 PBMC +464 CAVKDTDKLIF TRAV8-1*01 TRAJ34*01 HLA-A*02:01 B2M MHCI YVLDHLIVV BRLF1 EBV PMID:34811538 tetramer-sort yes amplicon-seq effector memory T cells T1D T1D_2 chip0420_633614 PBMC +466 CVVNGRDSSYKLIF TRAV12-1*01 TRAJ12*01 CASSSGLVAPGELFF TRBV2*01 TRBJ2-2*01 HLA-A*02:01 B2M MHCI GLCTLVAML BLMF1 EBV PMID:34811538 tetramer-sort yes amplicon-seq effector memory T cells T1D T1D_2 chip0420_594220 PBMC +467 CASRMGAGDTQYF TRBV10-2*01 TRBJ2-3*01 HLA-A*02:01 B2M MHCI GLCTLVAML BLMF1 EBV PMID:34811538 tetramer-sort yes amplicon-seq effector memory T cells T1D T1D_2 chip0420_815754 PBMC +468 CAESTSGGKLIF TRAV5*01 TRAJ23*01 CSVGTGGTNEKLFF TRBV29-1*01 TRBJ1-4*01 HLA-A*02:01 B2M MHCI GLCTLVAML BLMF1 EBV PMID:34811538 tetramer-sort yes amplicon-seq effector memory T cells T1D T1D_2 chip0420_178510 PBMC +469 CSVGTGGTNEKLFF TRBV29-1*01 TRBJ1-4*01 HLA-A*02:01 B2M MHCI GLCTLVAML BLMF1 EBV PMID:34811538 tetramer-sort yes amplicon-seq effector memory T cells T1D T1D_2 chip0420_532684 PBMC +470 CATNAGGTSYGKLTF TRAV12-2*01 TRAJ52*01 CASSYSAAGTEAFF TRBV6-5*01 TRBJ1-1*01 HLA-A*02:01 B2M MHCI LLAGIGTVPI PGT HomoSapiens PMID:34811538 tetramer-sort yes amplicon-seq Naive T cells T1D T1D_2 chip0420_323960 PBMC +472 CSVGTGGTNEKLFF TRBV29-1*01 TRBJ1-4*01 HLA-A*02:01 B2M MHCI GLCTLVAML BLMF1 EBV PMID:34811538 tetramer-sort yes amplicon-seq effector memory T cells T1D T1D_2 chip0420_340452 PBMC +474 CAESTSGGKLIF TRAV5*01 TRAJ23*01 CSVGTGGTNEKLFF TRBV29-1*01 TRBJ1-4*01 HLA-A*02:01 B2M MHCI GLCTLVAML BLMF1 EBV PMID:34811538 tetramer-sort yes amplicon-seq effector memory T cells T1D T1D_2 chip0420_746032 PBMC +475 CAASSENNNAGNMLTF TRAV23/DV6*01 TRAJ39*01 CASSIFAGGLFYNEQFF TRBV19*01 TRBJ2-1*01 HLA-A*02:01 B2M MHCI GILGFVFTL M1 InfluenzaA PMID:34811538 tetramer-sort yes amplicon-seq transitional T cells between effector and memory populations T1D T1D_1 chip0420_286639 PBMC +476 CSVGTGGTNEKLFF TRBV29-1*01 TRBJ1-4*01 HLA-A*02:01 B2M MHCI GLCTLVAML BLMF1 EBV PMID:34811538 tetramer-sort yes amplicon-seq effector memory T cells T1D T1D_2 chip0420_437811 PBMC +477 CASRMGAGDTQYF TRBV10-2*01 TRBJ2-3*01 HLA-A*02:01 B2M MHCI GLCTLVAML BLMF1 EBV PMID:34811538 tetramer-sort yes amplicon-seq effector memory T cells T1D T1D_2 chip0420_259401 PBMC +478 CASSYMSGEAFF TRBV6-2*01,TRBV6-3*01 TRBJ1-1*01 HLA-A*02:01 B2M MHCI YVLDHLIVV BRLF1 EBV PMID:34811538 tetramer-sort yes amplicon-seq effector memory T cells T1D T1D_2 chip0420_221696 PBMC +479 CSVGTGGTNEKLFF TRBV29-1*01 TRBJ1-4*01 HLA-A*02:01 B2M MHCI GLCTLVAML BLMF1 EBV PMID:34811538 tetramer-sort yes amplicon-seq effector memory T cells T1D T1D_2 chip0420_99727 PBMC +480 CAVKVDGQKLLF TRAV8-1*01 TRAJ16*01 HLA-A*02:01 B2M MHCI YVLDHLIVV BRLF1 EBV PMID:34811538 tetramer-sort yes amplicon-seq effector memory T cells T1D T1D_2 chip0420_279734 PBMC +481 CSVDQRTGQKKNYGYTF TRBV29-1*01 TRBJ1-2*01 HLA-A*02:01 B2M MHCI GLCTLVAML BLMF1 EBV PMID:34811538 tetramer-sort yes amplicon-seq effector memory T cells T1D T1D_2 chip0420_860450 PBMC +482 CAAFAGNLLAF TRAV29/DV5*01 TRAJ39*01 CASRQGDGDTQYF TRBV10-2*01 TRBJ2-3*01 HLA-A*02:01 B2M MHCI GLCTLVAML BLMF1 EBV PMID:34811538 tetramer-sort yes amplicon-seq effector T cells T1D T1D_2 chip0420_191023 PBMC +484 CAVSDtt?GHDMRF TRAV8-4*01 TRAJ43*01 CSVGSRGTNEKLFF TRBV29-1*01 TRBJ1-4*01 HLA-A*02:01 B2M MHCI GLCTLVAML BLMF1 EBV PMID:34811538 tetramer-sort yes amplicon-seq effector memory T cells T1D T1D_1 chip0420_116157 PBMC +485 CVVNGRDSSYKLIF TRAV12-1*01 TRAJ12*01 CASSSGLVAPGELFF TRBV2*01 TRBJ2-2*01 HLA-A*02:01 B2M MHCI GLCTLVAML BLMF1 EBV PMID:34811538 tetramer-sort yes amplicon-seq effector T cells T1D T1D_2 chip0420_791065 PBMC +486 CSVGTGGTNEKLFF TRBV29-1*01 TRBJ1-4*01 HLA-A*02:01 B2M MHCI GLCTLVAML BLMF1 EBV PMID:34811538 tetramer-sort yes amplicon-seq effector memory T cells T1D T1D_2 chip0420_351624 PBMC +487 CALKNTDKLIF TRAV16*01 TRAJ34*01 CASSQSRGSLWDTQYF TRBV4-3*01 TRBJ2-3*01 HLA-A*02:01 B2M MHCI YVLDHLIVV BRLF1 EBV PMID:34811538 tetramer-sort yes amplicon-seq effector memory T cells T1D T1D_2 chip0420_581823 PBMC +489 CSVGGTFYGYTF TRBV29-1*01 TRBJ1-2*01 HLA-A*02:01 B2M MHCI GLCTLVAML BLMF1 EBV PMID:34811538 tetramer-sort yes amplicon-seq effector memory T cells T1D T1D_2 chip0420_332372 PBMC +490 CSSQEGGYGYTF TRBV29-1*01 TRBJ1-2*01 HLA-A*02:01 B2M MHCI GLCTLVAML BLMF1 EBV PMID:34811538 tetramer-sort yes amplicon-seq effector memory T cells T1D T1D_2 chip0420_123983 PBMC +491 CASSPSTSGSGETQYF TRBV3-1*01 TRBJ2-5*01 HLA-A*02:01 B2M MHCI YVLDHLIVV BRLF1 EBV PMID:34811538 tetramer-sort yes amplicon-seq effector memory T cells T1D T1D_2 chip0420_596541 PBMC +492 CSVGTGGTNEKLFF TRBV29-1*01 TRBJ1-4*01 HLA-A*02:01 B2M MHCI GLCTLVAML BLMF1 EBV PMID:34811538 tetramer-sort yes amplicon-seq effector memory T cells T1D T1D_2 chip0420_670251 PBMC +494 CAFLPAGGta?RASPPINSS TRAV24*01 TRAJ53*01 HLA-A*02:01 B2M MHCI GILGFVFTL M1 InfluenzaA PMID:34811538 tetramer-sort yes amplicon-seq transitional T cells between effector and memory populations T1D T1D_1 chip0420_623966 PBMC +495 CATQQGRDSQPQHF TRBV28*01 TRBJ1-5*01 HLA-A*02:01 B2M MHCI GLCTLVAML BLMF1 EBV PMID:34811538 tetramer-sort yes amplicon-seq effector memory T cells T1D T1D_1 chip0420_719092 PBMC +496 CALGGLTF TRAV8-1*01 TRAJ22*01 CASSPSTSGSGETQYF TRBV3-1*01 TRBJ2-5*01 HLA-A*02:01 B2M MHCI YVLDHLIVV BRLF1 EBV PMID:34811538 tetramer-sort yes amplicon-seq effector memory T cells T1D T1D_2 chip0420_690323 PBMC +497 CAESTSGGKLIF TRAV5*01 TRAJ23*01 CSVGTGGTNEKLFF TRBV29-1*01 TRBJ1-4*01 HLA-A*02:01 B2M MHCI GLCTLVAML BLMF1 EBV PMID:34811538 tetramer-sort yes amplicon-seq effector memory T cells T1D T1D_2 chip0420_407627 PBMC +498 CAESTSGGKLIF TRAV5*01 TRAJ23*01 CSVGTGGTNEKLFF TRBV29-1*01 TRBJ1-4*01 HLA-A*02:01 B2M MHCI GLCTLVAML BLMF1 EBV PMID:34811538 tetramer-sort yes amplicon-seq effector T cells T1D T1D_2 chip0420_742623 PBMC +499 CAVNLYSTLTF TRAV8-1*01 TRAJ11*01 HLA-A*02:01 B2M MHCI YVLDHLIVV BRLF1 EBV PMID:34811538 tetramer-sort yes amplicon-seq effector memory T cells T1D T1D_2 chip0420_837825 PBMC +501 CAVKDTDKLIF TRAV8-1*01 TRAJ34*01 CASSQAMgg?VMNTEAFF TRBV4-3*01 TRBJ1-1*01 HLA-A*02:01 B2M MHCI YVLDHLIVV BRLF1 EBV PMID:34811538 tetramer-sort yes amplicon-seq effector memory T cells T1D T1D_2 chip0420_687808 PBMC +502 CASSTGQLSNTGELFF TRBV9*01 TRBJ2-2*01 HLA-A*02:01 B2M MHCI GLCTLVAML BLMF1 EBV PMID:34811538 tetramer-sort yes amplicon-seq effector memory T cells T1D T1D_1 chip0420_644890 PBMC +503 CAVRAtt?GSALRF TRAV8-4*01 TRAJ43*01 CSVGSRGTNEKLFF TRBV29-1*01 TRBJ1-4*01 HLA-A*02:01 B2M MHCI GLCTLVAML BLMF1 EBV PMID:34811538 tetramer-sort yes amplicon-seq effector T cells T1D T1D_1 chip0420_504959 PBMC +504 CASSVVGNEQFF TRBV9*01 TRBJ2-1*01 HLA-A*02:01 B2M MHCI GLCTLVAML BLMF1 EBV PMID:34811538 tetramer-sort yes amplicon-seq effector memory T cells T1D T1D_2 chip0420_265318 PBMC +505 CSVGTGGTNEKLFF TRBV29-1*01 TRBJ1-4*01 HLA-A*02:01 B2M MHCI GLCTLVAML BLMF1 EBV PMID:34811538 tetramer-sort yes amplicon-seq effector memory T cells T1D T1D_2 chip0420_599137 PBMC +507 CSVGGSFYGYTF TRBV29-1*01 TRBJ1-2*01 HLA-A*02:01 B2M MHCI GLCTLVAML BLMF1 EBV PMID:34811538 tetramer-sort yes amplicon-seq effector memory T cells T1D T1D_2 chip0420_230549 PBMC +508 CVVNGRDSSYKLIF TRAV12-1*01 TRAJ12*01 CASSSGLVAPGELFF TRBV2*01 TRBJ2-2*01 HLA-A*02:01 B2M MHCI GLCTLVAML BLMF1 EBV PMID:34811538 tetramer-sort yes amplicon-seq effector T cells T1D T1D_2 chip0420_380705 PBMC +509 CASSQGLANVLTF TRBV3-1*01 TRBJ2-6*01 HLA-A*02:01 B2M MHCI YVLDHLIVV BRLF1 EBV PMID:34811538 tetramer-sort yes amplicon-seq effector T cells T1D T1D_1 chip0420_339526 PBMC +510 CASTPDINTEAFF TRBV6-1*01 TRBJ1-1*01 HLA-A*02:01 B2M MHCI GLCTLVAML BLMF1 EBV PMID:34811538 tetramer-sort yes amplicon-seq effector T cells T1D T1D_2 chip0420_559158 PBMC +511 CSVGTGGTNEKLFF TRBV29-1*01 TRBJ1-4*01 HLA-A*02:01 B2M MHCI GLCTLVAML BLMF1 EBV PMID:34811538 tetramer-sort yes amplicon-seq effector memory T cells T1D T1D_2 chip0420_646223 PBMC +513 CAMREETSGSRLTF TRAV14/DV4*01 TRAJ10*01 CASSEAGETQYF TRBV10-2*01 TRBJ2-5*01 HLA-A*02:01 B2M MHCI ILKDFSILL ZNT8 HomoSapiens PMID:34811538 tetramer-sort yes amplicon-seq central memory T cells T1D T1D_2 chip0420_475672 PBMC +514 CSARDRTGNGYTF TRBV20-1*01 TRBJ1-2*01 HLA-A*02:01 B2M MHCI GLCTLVAML BLMF1 EBV PMID:34811538 tetramer-sort yes amplicon-seq effector memory T cells T1D T1D_2 chip0420_630375 PBMC +516 CSVGTGGTNEKLFF TRBV29-1*01 TRBJ1-4*01 HLA-A*02:01 B2M MHCI GLCTLVAML BLMF1 EBV PMID:34811538 tetramer-sort yes amplicon-seq effector memory T cells T1D T1D_2 chip0420_737085 PBMC +517 CAATSYTGTASKLTF TRAV8-1*01 TRAJ44*01 CASSLYYNEQFF TRBV12-3*01,TRBV12-4*01 TRBJ2-1*01 HLA-A*02:01 B2M MHCI YLLEMLWRL LMP1 EBV PMID:34811538 tetramer-sort yes amplicon-seq central memory T cells T1D T1D_2 chip0420_568518 PBMC +518 CAVKDTDKLIF TRAV8-1*01 TRAJ34*01 HLA-A*02:01 B2M MHCI YVLDHLIVV BRLF1 EBV PMID:34811538 tetramer-sort yes amplicon-seq effector memory T cells T1D T1D_1 chip0420_103338 PBMC +519 CADLGCW??cSPRKLLW TRAV36/DV7*01 TRAJ38*01 CASSPGQLSNTGELFF TRBV9*01 TRBJ2-2*01 HLA-A*02:01 B2M MHCI GLCTLVAML BLMF1 EBV PMID:34811538 tetramer-sort yes amplicon-seq effector T cells T1D T1D_1 chip0420_28115 PBMC +520 CASLTPGASKIIF TRAV8-6*01 TRAJ3*01 CASSSGLVAPGELFF TRBV2*01 TRBJ2-2*01 HLA-A*02:01 B2M MHCI GLCTLVAML BLMF1 EBV PMID:34811538 tetramer-sort yes amplicon-seq effector T cells T1D T1D_2 chip0420_161874 PBMC +521 CAESTSGGKLIF TRAV5*01 TRAJ23*01 CSVGTGGTNEKLFF TRBV29-1*01 TRBJ1-4*01 HLA-A*02:01 B2M MHCI GLCTLVAML BLMF1 EBV PMID:34811538 tetramer-sort yes amplicon-seq effector memory T cells T1D T1D_2 chip0420_556452 PBMC +522 CSVGSRGTNEKLFF TRBV29-1*01 TRBJ1-4*01 HLA-A*02:01 B2M MHCI GLCTLVAML BLMF1 EBV PMID:34811538 tetramer-sort yes amplicon-seq effector memory T cells T1D T1D_1 chip0420_540415 PBMC +523 CGPEEPNDYKLSF TRAV30*01 TRAJ20*01 CASSTGQLSNTGELFF TRBV9*01 TRBJ2-2*01 HLA-A*02:01 B2M MHCI GLCTLVAML BLMF1 EBV PMID:34811538 tetramer-sort yes amplicon-seq effector memory T cells T1D T1D_1 chip0420_114253 PBMC +525 CASSPGQLSNTGELFF TRBV9*01 TRBJ2-2*01 HLA-A*02:01 B2M MHCI GLCTLVAML BLMF1 EBV PMID:34811538 tetramer-sort yes amplicon-seq effector memory T cells T1D T1D_1 chip0420_143589 PBMC +526 CAVREP*a?tNNARLMF TRAV8-6*01 TRAJ31*01 HLA-A*02:01 B2M MHCI YVLDHLIVV BRLF1 EBV PMID:34811538 tetramer-sort yes amplicon-seq effector T cells T1D T1D_2 chip0420_711257 PBMC +527 CASSDTGTSLSEQYF TRBV9*01 TRBJ2-7*01 HLA-A*02:01 B2M MHCI LVGPTPVNI POL HIV-1 PMID:34811538 tetramer-sort yes amplicon-seq Naive T cells T1D T1D_1 chip0420_101502 PBMC +528 CASSPHLGAAAEQYF TRBV19*01 TRBJ2-7*01 HLA-A*02:01 B2M MHCI YVLDHLIVV BRLF1 EBV PMID:34811538 tetramer-sort yes amplicon-seq effector memory T cells T1D T1D_1 chip0420_82819 PBMC +530 CASSTGQLSNTGELFF TRBV9*01 TRBJ2-2*01 HLA-A*02:01 B2M MHCI GLCTLVAML BLMF1 EBV PMID:34811538 tetramer-sort yes amplicon-seq effector memory T cells T1D T1D_1 chip0420_467999 PBMC +531 CSVGTGGTNEKLFF TRBV29-1*01 TRBJ1-4*01 HLA-A*02:01 B2M MHCI GLCTLVAML BLMF1 EBV PMID:34811538 tetramer-sort yes amplicon-seq effector memory T cells T1D T1D_2 chip0420_536547 PBMC +532 CSVGTGGTNEKLFF TRBV29-1*01 TRBJ1-4*01 HLA-A*02:01 B2M MHCI GLCTLVAML BLMF1 EBV PMID:34811538 tetramer-sort yes amplicon-seq effector T cells T1D T1D_2 chip0420_835313 PBMC +533 CASSSGLVAPGELFF TRBV2*01 TRBJ2-2*01 HLA-A*02:01 B2M MHCI GLCTLVAML BLMF1 EBV PMID:34811538 tetramer-sort yes amplicon-seq effector T cells T1D T1D_2 chip0420_716851 PBMC +535 CVVNGGDSSYKLIF TRAV12-1*01 TRAJ12*01 CASSSGQVLPNEQFF TRBV2*01 TRBJ2-1*01 HLA-A*02:01 B2M MHCI GLCTLVAML BLMF1 EBV PMID:34811538 tetramer-sort yes amplicon-seq effector T cells T1D T1D_1 chip0420_811962 PBMC +536 CAVVSNSGYALNF TRAV21*01 TRAJ41*01 CASSSGGDVDTQYF TRBV7-3*01 TRBJ2-3*01 HLA-A*02:01 B2M MHCI GLCTLVAML BLMF1 EBV PMID:34811538 tetramer-sort yes amplicon-seq effector memory T cells T1D T1D_1 chip0420_646315 PBMC +537 CGPEEPNDYKLSF TRAV30*01 TRAJ20*01 CASSPGQLSNTGELFF TRBV9*01 TRBJ2-2*01 HLA-A*02:01 B2M MHCI GLCTLVAML BLMF1 EBV PMID:34811538 tetramer-sort yes amplicon-seq effector memory T cells T1D T1D_1 chip0420_514381 PBMC +538 CAMSLSNFGNEKLTF TRAV12-3*01 TRAJ48*01 HLA-A*02:01 B2M MHCI LLAGIGTVPI PGT HomoSapiens PMID:34811538 tetramer-sort yes amplicon-seq Naive T cells T1D T1D_1 chip0420_610306 PBMC +539 CASSPDQTSSYNEQFF TRBV27*01 TRBJ2-1*01 HLA-A*02:01 B2M MHCI YVLDHLIVV BRLF1 EBV PMID:34811538 tetramer-sort yes amplicon-seq effector memory T cells T1D T1D_1 chip0420_97718 PBMC +540 CAVKDTDKLIF TRAV8-1*01 TRAJ34*01 CASSLFSSEQFF TRBV28*01 TRBJ2-1*01 HLA-A*02:01 B2M MHCI YVLDHLIVV BRLF1 EBV PMID:34811538 tetramer-sort yes amplicon-seq effector memory T cells T1D T1D_1 chip0420_45418 PBMC +541 YPVKSGYSTLTF TRAV8-1*01 TRAJ11*01 HLA-A*02:01 B2M MHCI YVLDHLIVV BRLF1 EBV PMID:34811538 tetramer-sort yes amplicon-seq effector T cells T1D T1D_2 chip0420_509910 PBMC +542 CASSLAQVAGGNEQFF TRBV12-3*01,TRBV12-4*01 TRBJ2-1*01 HLA-A*02:01 B2M MHCI GLCTLVAML BLMF1 EBV PMID:34811538 tetramer-sort yes amplicon-seq effector memory T cells T1D T1D_2 chip0420_262124 PBMC +544 CAESTSGGKLIF TRAV5*01 TRAJ23*01 CSVGTGGTNEKLFF TRBV29-1*01 TRBJ1-4*01 HLA-A*02:01 B2M MHCI GLCTLVAML BLMF1 EBV PMID:34811538 tetramer-sort yes amplicon-seq effector memory T cells T1D T1D_2 chip0420_532950 PBMC +546 CAESTSGGTRLF TRAV5*01 TRAJ23*01 CSVGTGGTNEKLFF TRBV29-1*01 TRBJ1-4*01 HLA-A*02:01 B2M MHCI GLCTLVAML BLMF1 EBV PMID:34811538 tetramer-sort yes amplicon-seq effector T cells T1D T1D_2 chip0420_559633 PBMC +547 CSVGTGGTNEKLFF TRBV29-1*01 TRBJ1-4*01 HLA-A*02:01 B2M MHCI GLCTLVAML BLMF1 EBV PMID:34811538 tetramer-sort yes amplicon-seq effector memory T cells T1D T1D_2 chip0420_115020 PBMC +548 CAGPVDGGSQGNLIF TRAV25*01 TRAJ42*01 HLA-A*02:01 B2M MHCI GILGFVFTL M1 InfluenzaA PMID:34811538 tetramer-sort yes amplicon-seq central memory T cells T1D T1D_2 chip0420_780621 PBMC +549 CSVGTGGTNEKLFF TRBV29-1*01 TRBJ1-4*01 HLA-A*02:01 B2M MHCI GLCTLVAML BLMF1 EBV PMID:34811538 tetramer-sort yes amplicon-seq effector memory T cells T1D T1D_2 chip0420_220476 PBMC +550 CAWSVQLAGVDEQYF TRBV30*01 TRBJ2-7*01 HLA-A*02:01 B2M MHCI YVLDHLIVV BRLF1 EBV PMID:34811538 tetramer-sort yes amplicon-seq effector memory T cells T1D T1D_2 chip0420_765597 PBMC +551 CGPEEPNNYKLSF TRAV30*01 TRAJ20*01 GASSTGQLSNTGELFF TRBV9*01 TRBJ2-2*01 HLA-A*02:01 B2M MHCI GLCTLVAML BLMF1 EBV PMID:34811538 tetramer-sort yes amplicon-seq effector memory T cells T1D T1D_1 chip0420_645970 PBMC +553 CAVKDTDKLIF TRAV8-1*01 TRAJ34*01 HLA-A*02:01 B2M MHCI YVLDHLIVV BRLF1 EBV PMID:34811538 tetramer-sort yes amplicon-seq effector memory T cells T1D T1D_2 chip0420_780399 PBMC +556 CAASENEKLTF TRAV13-1*01 TRAJ48*01 HLA-A*02:01 B2M MHCI SISVLISAL ZNT8 HomoSapiens PMID:34811538 tetramer-sort yes amplicon-seq Naive T cells T1D T1D_1 chip0420_788215 PBMC +557 CSVGTGGTNEKLFF TRBV29-1*01 TRBJ1-4*01 HLA-A*02:01 B2M MHCI GLCTLVAML BLMF1 EBV PMID:34811538 tetramer-sort yes amplicon-seq effector T cells T1D T1D_2 chip0420_555168 PBMC +558 CASLTPGASKIIF TRAV8-6*01 TRAJ3*01 CASSSGLVAPGELFF TRBV2*01 TRBJ2-2*01 HLA-A*02:01 B2M MHCI GLCTLVAML BLMF1 EBV PMID:34811538 tetramer-sort yes amplicon-seq effector memory T cells T1D T1D_2 chip0420_274060 PBMC +559 CASSPSRDRGPNEKLFF TRBV27*01 TRBJ1-4*01 HLA-A*02:01 B2M MHCI RGPGRAFVTI GP160 HIV-1 PMID:34811538 tetramer-sort yes amplicon-seq Naive T cells T1D T1D_2 chip0420_746881 PBMC +560 CASSDGRVHPGTQYF TRBV2*01 TRBJ2-5*01 HLA-A*02:01 B2M MHCI GLCTLVAML BLMF1 EBV PMID:34811538 tetramer-sort yes amplicon-seq effector memory T cells T1D T1D_1 chip0420_333964 PBMC +561 CAAYAGNMLTF TRAV29/DV5*01 TRAJ39*01 CASRMGAGDTQYF TRBV10-2*01 TRBJ2-3*01 HLA-A*02:01 B2M MHCI GLCTLVAML BLMF1 EBV PMID:34811538 tetramer-sort yes amplicon-seq transitional T cells between effector and memory populations T1D T1D_2 chip0420_302556 PBMC +562 CAADSGNTPLVF TRAV12-2*01 TRAJ29*01 CASGRSGELFF TRBV9*01 TRBJ2-2*01 HLA-A*02:01 B2M MHCI ALAGIGILTV MART1 HomoSapiens PMID:34811538 tetramer-sort yes amplicon-seq Naive T cells T1D T1D_1 chip0420_112838 PBMC +564 CASSPHLGAAAEQYF TRBV19*01 TRBJ2-7*01 HLA-A*02:01 B2M MHCI YVLDHLIVV BRLF1 EBV PMID:34811538 tetramer-sort yes amplicon-seq effector T cells T1D T1D_1 chip0420_754781 PBMC +565 CAMSRSNFGNEKLTF TRAV12-3*01 TRAJ48*01 CSASHRGLAGVRETQYF TRBV20-1*01 TRBJ2-5*01 HLA-A*02:01 B2M MHCI LLAGIGTVPI PGT HomoSapiens PMID:34811538 tetramer-sort yes amplicon-seq Naive T cells T1D T1D_1 chip0420_865599 PBMC +566 CATDGSARLMF TRAV17*01 TRAJ31*01 HLA-A*02:01 B2M MHCI LLPPLLEHL PTPRN HomoSapiens PMID:34811538 tetramer-sort yes amplicon-seq Naive T cells T1D T1D_2 chip0420_649863 PBMC +567 CASSSGQVLPNEQFF TRBV2*01 TRBJ2-1*01 HLA-A*02:01 B2M MHCI GLCTLVAML BLMF1 EBV PMID:34811538 tetramer-sort yes amplicon-seq effector T cells T1D T1D_1 chip0420_578478 PBMC +568 CASSIGca??aaTGELFF TRBV19*01 TRBJ2-2*01 HLA-A*02:01 B2M MHCI CLGHNHKEV ZNT8 HomoSapiens PMID:34811538 tetramer-sort yes amplicon-seq effector memory T cells T1D T1D_2 chip0420_604692 PBMC +570 CASRAGAGDTQYF TRBV10-2*01 TRBJ2-3*01 HLA-A*02:01 B2M MHCI GLCTLVAML BLMF1 EBV PMID:34811538 tetramer-sort yes amplicon-seq effector memory T cells T1D T1D_2 chip0420_167758 PBMC +571 CVVNGRDSSYKLIF TRAV12-1*01 TRAJ12*01 CASSSGLVAPGELFF TRBV2*01 TRBJ2-2*01 HLA-A*02:01 B2M MHCI GLCTLVAML BLMF1 EBV PMID:34811538 tetramer-sort yes amplicon-seq effector memory T cells T1D T1D_2 chip0420_742727 PBMC +573 CAVAQ??cNDMRF TRAV36/DV7*01 TRAJ43*01 CASSSRSTDTQYF TRBV19*01 TRBJ2-3*01 HLA-A*02:01 B2M MHCI GILGFVFTL M1 InfluenzaA PMID:34811538 tetramer-sort yes amplicon-seq transitional T cells between effector and memory populations T1D T1D_1 chip0420_89366 PBMC +574 CASSVQGGNYGYTF TRBV6-1*01 TRBJ1-2*01 HLA-A*02:01 B2M MHCI FLYALALLL LMP2 EBV PMID:34811538 tetramer-sort yes amplicon-seq central memory T cells T1D T1D_1 chip0420_36251 PBMC +576 CAVNLYSTLTF TRAV8-1*01 TRAJ11*01 HLA-A*02:01 B2M MHCI YVLDHLIVV BRLF1 EBV PMID:34811538 tetramer-sort yes amplicon-seq effector T cells T1D T1D_2 chip0420_688064 PBMC +577 CASSSGQVLPNEQFF TRBV2*01 TRBJ2-1*01 HLA-A*02:01 B2M MHCI GLCTLVAML BLMF1 EBV PMID:34811538 tetramer-sort yes amplicon-seq effector memory T cells T1D T1D_1 chip0420_724861 PBMC +579 CAWRGEPSYNEQFF TRBV30*01 TRBJ2-1*01 HLA-A*02:01 B2M MHCI YVLDHLIVV BRLF1 EBV PMID:34811538 tetramer-sort yes amplicon-seq effector memory T cells T1D T1D_2 chip0420_197995 PBMC +580 CAVPSGNTPLVF TRAV12-2*01 TRAJ29*01 CASSSQGGGTGELFF TRBV13*01 TRBJ2-2*01 HLA-A*02:01 B2M MHCI LLAGIGTVPI PGT HomoSapiens PMID:34811538 tetramer-sort yes amplicon-seq Naive T cells T1D T1D_2 chip0420_741299 PBMC +581 CVVNGGDSSYKLIF TRAV12-1*01 TRAJ12*01 CASSSGQVLPNEQFF TRBV2*01 TRBJ2-1*01 HLA-A*02:01 B2M MHCI GLCTLVAML BLMF1 EBV PMID:34811538 tetramer-sort yes amplicon-seq effector memory T cells T1D T1D_1 chip0420_845945 PBMC +582 CATQQGRDSQPQHF TRBV28*01 TRBJ1-5*01 HLA-A*02:01 B2M MHCI GLCTLVAML BLMF1 EBV PMID:34811538 tetramer-sort yes amplicon-seq effector memory T cells T1D T1D_1 chip0420_170564 PBMC +584 CAVRVMHRAVTIIF TRAV3*01 TRAJ30*01 HLA-A*02:01 B2M MHCI FLFAVGFYL IGRP HomoSapiens PMID:34811538 tetramer-sort yes amplicon-seq effector memory T cells T1D T1D_1 chip0420_293210 PBMC +585 CSVGTGGTNEKLFF TRBV29-1*01 TRBJ1-4*01 HLA-A*02:01 B2M MHCI GLCTLVAML BLMF1 EBV PMID:34811538 tetramer-sort yes amplicon-seq effector memory T cells T1D T1D_2 chip0420_142462 PBMC +586 CAVVSNSGYALNF TRAV21*01 TRAJ41*01 CASSYPKct?EAYNEQFF TRBV6-5*01 TRBJ2-1*01 HLA-A*02:01 B2M MHCI GLCTLVAML BLMF1 EBV PMID:34811538 tetramer-sort yes amplicon-seq effector memory T cells T1D T1D_1 chip0420_157538 PBMC +587 CVVNGGDSSYKLIF TRAV12-1*01 TRAJ12*01 CASSEGRVAPGEQYF TRBV2*01 TRBJ2-7*01 HLA-A*02:01 B2M MHCI GLCTLVAML BLMF1 EBV PMID:34811538 tetramer-sort yes amplicon-seq effector memory T cells T1D T1D_1 chip0420_276819 PBMC +588 CAVSARAGGFKTIF TRAV8-4*01 TRAJ9*01 CASSSGLVAPGELFF TRBV2*01 TRBJ2-2*01 HLA-A*02:01 B2M MHCI GILGFVFTL M1 InfluenzaA PMID:34811538 tetramer-sort yes amplicon-seq transitional T cells between effector and memory populations T1D T1D_1 chip0420_228368 PBMC +590 CALYNTDKLIF TRAV9-2*01 TRAJ34*01 CASSPVSGSTYEQYF TRBV3-1*01 TRBJ2-7*01 HLA-A*02:01 B2M MHCI GLCTLVAML BLMF1 EBV PMID:34811538 tetramer-sort yes amplicon-seq effector memory T cells T1D T1D_1 chip0420_503840 PBMC +591 CAVPLGGFc?tGGYGWLIF TRAV20*01 TRAJ4*01 HLA-A*02:01 B2M MHCI GILGFVFTL M1 InfluenzaA PMID:34811538 tetramer-sort yes amplicon-seq transitional T cells between effector and memory populations T1D T1D_1 chip0420_47381 PBMC +593 CSVDQRTGQKKNYGYTF TRBV29-1*01 TRBJ1-2*01 HLA-A*02:01 B2M MHCI GLCTLVAML BLMF1 EBV PMID:34811538 tetramer-sort yes amplicon-seq effector memory T cells T1D T1D_2 chip0420_283771 PBMC +594 CAEAANQAGTALIF TRAV5*01 TRAJ15*01 CASSQSPGGTQYF TRBV14*01 TRBJ2-3*01 HLA-A*02:01 B2M MHCI GLCTLVAML BLMF1 EBV PMID:34811538 tetramer-sort yes amplicon-seq effector memory T cells T1D T1D_1 chip0420_438703 PBMC +595 CANSPVSGSTYEQYF TRBV3-1*01 TRBJ2-7*01 HLA-A*02:01 B2M MHCI GLCTLVAML BLMF1 EBV PMID:34811538 tetramer-sort yes amplicon-seq effector memory T cells T1D T1D_1 chip0420_878228 PBMC +596 CAVMNTGFQKLVF TRAV8-3*01 TRAJ8*01 HLA-A*02:01 B2M MHCI YVLDHLIVV BRLF1 EBV PMID:34811538 tetramer-sort yes amplicon-seq effector memory T cells T1D T1D_2 chip0420_620398 PBMC +597 CASSSGLVAPGELFF TRBV2*01 TRBJ2-2*01 HLA-A*02:01 B2M MHCI GLCTLVAML BLMF1 EBV PMID:34811538 tetramer-sort yes amplicon-seq effector memory T cells T1D T1D_2 chip0420_85497 PBMC +598 CASSVRAGETQYF TRBV19*01 TRBJ2-5*01 HLA-A*02:01 B2M MHCI GILGFVFTL M1 InfluenzaA PMID:34811538 tetramer-sort yes amplicon-seq transitional T cells between effector and memory populations T1D T1D_1 chip0420_855446 PBMC +600 CSANDHTYNEQFF TRBV20-1*01 TRBJ2-1*01 HLA-A*02:01 B2M MHCI YVLDHLIVV BRLF1 EBV PMID:34811538 tetramer-sort yes amplicon-seq effector memory T cells T1D T1D_1 chip0420_407753 PBMC +602 CALCGGGGNKLTL TRAV16*01 TRAJ10*01 CASRQGDGDTQYF TRBV10-2*01 TRBJ2-3*01 HLA-A*02:01 B2M MHCI GLCTLVAML BLMF1 EBV PMID:34811538 tetramer-sort yes amplicon-seq effector memory T cells T1D T1D_2 chip0420_599832 PBMC +603 CASSQSPGGTQYF TRBV14*01 TRBJ2-3*01 HLA-A*02:01 B2M MHCI GLCTLVAML BLMF1 EBV PMID:34811538 tetramer-sort yes amplicon-seq effector memory T cells T1D T1D_1 chip0420_262115 PBMC +604 CSARDGSGTVDSPLHF TRBV20-1*01 TRBJ1-6*01 HLA-A*02:01 B2M MHCI GLCTLVAML BLMF1 EBV PMID:34811538 tetramer-sort yes amplicon-seq effector memory T cells T1D T1D_1 chip0420_45240 PBMC +605 CAVKATDKLLF TRAV8-3*01 TRAJ34*01 HLA-A*02:01 B2M MHCI YVLDHLIVV BRLF1 EBV PMID:34811538 tetramer-sort yes amplicon-seq effector memory T cells T1D T1D_1 chip0420_529 PBMC +606 CANTPDINTEAFF TRBV6-1*01 TRBJ1-1*01 HLA-A*02:01 B2M MHCI GLCTLVAML BLMF1 EBV PMID:34811538 tetramer-sort yes amplicon-seq transitional T cells between effector and memory populations T1D T1D_2 chip0420_462339 PBMC +609 CASSSGGNVDTQYF TRBV7-3*01 TRBJ2-3*01 HLA-A*02:01 B2M MHCI GLCTLVAML BLMF1 EBV PMID:34811538 tetramer-sort yes amplicon-seq effector memory T cells T1D T1D_1 chip0420_692496 PBMC +610 CASSINGGRRDGYTF TRBV19*01 TRBJ1-2*01 HLA-A*02:01 B2M MHCI GILGFVFTL M1 InfluenzaA PMID:34811538 tetramer-sort yes amplicon-seq transitional T cells between effector and memory populations T1D T1D_1 chip0420_480647 PBMC +612 CASNLAGNNEQFF TRBV9*01 TRBJ2-1*01 HLA-A*02:01 B2M MHCI GLCTLVAML BLMF1 EBV PMID:34811538 tetramer-sort yes amplicon-seq effector memory T cells T1D T1D_2 chip0420_133646 PBMC +613 CASRGLPGGGREAFF TRBV28*01 TRBJ1-1*01 HLA-A*02:01 B2M MHCI YVLDHLIVV BRLF1 EBV PMID:34811538 tetramer-sort yes amplicon-seq effector T cells T1D T1D_1 chip0420_764390 PBMC +614 CAVEPAYY??cSGTYKYIF TRAV2*01 TRAJ40*01 HLA-A*02:01 B2M MHCI FLYALALLL LMP2 EBV PMID:34811538 tetramer-sort yes amplicon-seq effector memory T cells T1D T1D_1 chip0420_596229 PBMC +615 CSVGTGGTNEKLFF TRBV29-1*01 TRBJ1-4*01 HLA-A*02:01 B2M MHCI GLCTLVAML BLMF1 EBV PMID:34811538 tetramer-sort yes amplicon-seq effector memory T cells T1D T1D_2 chip0420_500857 PBMC +616 CASSVQGGNYGYTF TRBV6-1*01 TRBJ1-2*01 HLA-A*02:01 B2M MHCI FLYALALLL LMP2 EBV PMID:34811538 tetramer-sort yes amplicon-seq effector memory T cells tet_neg chip0420_67149 PBMC +617 CSVGSRGTNEKLFF TRBV29-1*01 TRBJ1-4*01 HLA-A*02:01 B2M MHCI GLCTLVAML BLMF1 EBV PMID:34811538 tetramer-sort yes amplicon-seq effector memory T cells T1D T1D_1 chip0420_665015 PBMC +618 CAWGVQLAGVDEQYF TRBV30*01 TRBJ2-7*01 HLA-A*02:01 B2M MHCI YVLDHLIVV BRLF1 EBV PMID:34811538 tetramer-sort yes amplicon-seq effector memory T cells T1D T1D_2 chip0420_200841 PBMC +619 CAENSGGGSQGNLIF TRAV13-2*01 TRAJ42*01 CSVGSRGTNEKLFF TRBV29-1*01 TRBJ1-4*01 HLA-A*02:01 B2M MHCI GLCTLVAML BLMF1 EBV PMID:34811538 tetramer-sort yes amplicon-seq transitional T cells between effector and memory populations T1D T1D_1 chip0420_776151 PBMC +620 CAVKGTGTASKLTF TRAV21*01 TRAJ44*01 CSARYRGGSGNTIYF TRBV20-1*01 TRBJ1-3*01 HLA-A*02:01 B2M MHCI LLAGIGTVPI PGT HomoSapiens PMID:34811538 tetramer-sort yes amplicon-seq Naive T cells T1D T1D_1 chip0420_440009 PBMC +621 CASSTRSTDTQYF TRBV19*01 TRBJ2-3*01 HLA-A*02:01 B2M MHCI GILGFVFTL M1 InfluenzaA PMID:34811538 tetramer-sort yes amplicon-seq effector T cells T1D T1D_1 chip0420_380113 PBMC +622 CASSSGGNVDTQYF TRBV7-3*01 TRBJ2-3*01 HLA-A*02:01 B2M MHCI GLCTLVAML BLMF1 EBV PMID:34811538 tetramer-sort yes amplicon-seq effector memory T cells T1D T1D_1 chip0420_646886 PBMC +623 CASRMGAGDTQYF TRBV10-2*01 TRBJ2-3*01 HLA-A*02:01 B2M MHCI GLCTLVAML BLMF1 EBV PMID:34811538 tetramer-sort yes amplicon-seq effector memory T cells T1D T1D_2 chip0420_456954 PBMC +626 CAVRDDRDDKIIF TRAV3*01 TRAJ30*01 HLA-A*02:01 B2M MHCI GLCTLVAML BLMF1 EBV PMID:34811538 tetramer-sort yes amplicon-seq effector memory T cells T1D T1D_2 chip0420_407076 PBMC +627 CASRQGDGDTQYF TRBV10-2*01 TRBJ2-3*01 HLA-A*02:01 B2M MHCI GLCTLVAML BLMF1 EBV PMID:34811538 tetramer-sort yes amplicon-seq effector T cells T1D T1D_2 chip0420_314893 PBMC +628 CASSQSPGGTQYF TRBV14*01 TRBJ2-3*01 HLA-A*02:01 B2M MHCI GLCTLVAML BLMF1 EBV PMID:34811538 tetramer-sort yes amplicon-seq effector memory T cells T1D T1D_1 chip0420_674711 PBMC +629 CSVGTGGTNEKLFF TRBV29-1*01 TRBJ1-4*01 HLA-A*02:01 B2M MHCI GLCTLVAML BLMF1 EBV PMID:34811538 tetramer-sort yes amplicon-seq effector memory T cells T1D T1D_2 chip0420_505332 PBMC +631 CGPAAPSDYKLSF TRAV30*01 TRAJ20*01 CASSTGQLSNTGELFF TRBV9*01 TRBJ2-2*01 HLA-A*02:01 B2M MHCI GLCTLVAML BLMF1 EBV PMID:34811538 tetramer-sort yes amplicon-seq effector T cells T1D T1D_1 chip0420_858625 PBMC +632 CASSPDQTSSYNEQFF TRBV27*01 TRBJ2-1*01 HLA-A*02:01 B2M MHCI YVLDHLIVV BRLF1 EBV PMID:34811538 tetramer-sort yes amplicon-seq effector T cells T1D T1D_1 chip0420_815429 PBMC +633 CSVGGSFYGYTF TRBV29-1*01 TRBJ1-2*01 HLA-A*02:01 B2M MHCI GLCTLVAML BLMF1 EBV PMID:34811538 tetramer-sort yes amplicon-seq effector memory T cells T1D T1D_2 chip0420_621703 PBMC +634 CALGGLTF TRAV8-1*01 TRAJ22*01 CASSPSTSGSGETQYF TRBV3-1*01 TRBJ2-5*01 HLA-A*02:01 B2M MHCI YVLDHLIVV BRLF1 EBV PMID:34811538 tetramer-sort yes amplicon-seq effector T cells T1D T1D_2 chip0420_196799 PBMC +635 CSVDQRTGQKKNYGYTF TRBV29-1*01 TRBJ1-2*01 HLA-A*02:01 B2M MHCI GLCTLVAML BLMF1 EBV PMID:34811538 tetramer-sort yes amplicon-seq effector memory T cells T1D T1D_2 chip0420_82377 PBMC +636 CSASGGTGNGYTF TRBV20-1*01 TRBJ1-2*01 HLA-A*02:01 B2M MHCI GLCTLVAML BLMF1 EBV PMID:34811538 tetramer-sort yes amplicon-seq effector T cells T1D T1D_1 chip0420_75422 PBMC +637 CASSSGLVAPGELFF TRBV2*01 TRBJ2-2*01 HLA-A*02:01 B2M MHCI GLCTLVAML BLMF1 EBV PMID:34811538 tetramer-sort yes amplicon-seq effector memory T cells T1D T1D_2 chip0420_611546 PBMC +638 CAVAAGKSTF TRAV12-2*01 TRAJ27*01 CSAMNTGELFF TRBV20-1*01 TRBJ2-2*01 HLA-A*02:01 B2M MHCI LLAGIGTVPI PGT HomoSapiens PMID:34811538 tetramer-sort yes amplicon-seq Naive T cells T1D T1D_1 chip0420_352352 PBMC +639 CAVSGGGSQGNLIF TRAV3*01 TRAJ42*01 CASSSRSQDTQYF TRBV19*01 TRBJ2-3*01 HLA-A*02:01 B2M MHCI GILGFVFTL M1 InfluenzaA PMID:34811538 tetramer-sort yes amplicon-seq transitional T cells between effector and memory populations T1D T1D_1 chip0420_346180 PBMC +640 CASSPDQTSSYNEQFF TRBV27*01 TRBJ2-1*01 HLA-A*02:01 B2M MHCI YVLDHLIVV BRLF1 EBV PMID:34811538 tetramer-sort yes amplicon-seq effector memory T cells T1D T1D_1 chip0420_41798 PBMC +641 CASSTGQLSNTGELFF TRBV9*01 TRBJ2-2*01 HLA-A*02:01 B2M MHCI GLCTLVAML BLMF1 EBV PMID:34811538 tetramer-sort yes amplicon-seq effector memory T cells T1D T1D_1 chip0420_111314 PBMC +642 CASSQSPGGTQYF TRBV14*01 TRBJ2-3*01 HLA-A*02:01 B2M MHCI GLCTLVAML BLMF1 EBV PMID:34811538 tetramer-sort yes amplicon-seq effector T cells T1D T1D_1 chip0420_682916 PBMC +643 CASSLGQGGEQFF TRBV11-3*01 TRBJ2-1*01 HLA-A*02:01 B2M MHCI LLAGIGTVPI PGT HomoSapiens PMID:34811538 tetramer-sort yes amplicon-seq Naive T cells T1D T1D_1 chip0420_186494 PBMC +644 CAEILIa?cTAQLIF TRAV13-2*01 TRAJ34*01 CASSSGQVLPNEQFF TRBV2*01 TRBJ2-1*01 HLA-A*02:01 B2M MHCI GLCTLVAML BLMF1 EBV PMID:34811538 tetramer-sort yes amplicon-seq effector memory T cells T1D T1D_1 chip0420_379604 PBMC +645 CSVGSRGTNEKLFF TRBV29-1*01 TRBJ1-4*01 HLA-A*02:01 B2M MHCI GLCTLVAML BLMF1 EBV PMID:34811538 tetramer-sort yes amplicon-seq effector memory T cells T1D T1D_1 chip0420_187435 PBMC +646 CAMREGPRYNNNDMRF TRAV14/DV4*01 TRAJ43*01 CASRMGAGDTQYF TRBV10-2*01 TRBJ2-3*01 HLA-A*02:01 B2M MHCI GLCTLVAML BLMF1 EBV PMID:34811538 tetramer-sort yes amplicon-seq effector memory T cells T1D T1D_2 chip0420_621894 PBMC +647 CSVGTGGTNEKLFF TRBV29-1*01 TRBJ1-4*01 HLA-A*02:01 B2M MHCI GLCTLVAML BLMF1 EBV PMID:34811538 tetramer-sort yes amplicon-seq effector memory T cells T1D T1D_2 chip0420_787556 PBMC +648 CSAVTEGGGTEAFF TRBV20-1*01 TRBJ1-1*01 HLA-A*02:01 B2M MHCI ALAGIGILTV MART1 HomoSapiens PMID:34811538 tetramer-sort yes amplicon-seq central memory T cells T1D T1D_2 chip0420_107920 PBMC +649 CAAYADNMLTF TRAV29/DV5*01 TRAJ39*01 CASRMGAGDTQYF TRBV10-2*01 TRBJ2-3*01 HLA-A*02:01 B2M MHCI GLCTLVAML BLMF1 EBV PMID:34811538 tetramer-sort yes amplicon-seq effector memory T cells T1D T1D_2 chip0420_592582 PBMC +650 CASRAGAGDTQYF TRBV10-2*01 TRBJ2-3*01 HLA-A*02:01 B2M MHCI GLCTLVAML BLMF1 EBV PMID:34811538 tetramer-sort yes amplicon-seq effector memory T cells T1D T1D_2 chip0420_859723 PBMC +652 CSVGTGGTNEKLFF TRBV29-1*01 TRBJ1-4*01 HLA-A*02:01 B2M MHCI GLCTLVAML BLMF1 EBV PMID:34811538 tetramer-sort yes amplicon-seq effector T cells T1D T1D_2 chip0420_132128 PBMC +653 CSVGSRGTNEKLFF TRBV29-1*01 TRBJ1-4*01 HLA-A*02:01 B2M MHCI GLCTLVAML BLMF1 EBV PMID:34811538 tetramer-sort yes amplicon-seq effector memory T cells T1D T1D_1 chip0420_6559 PBMC +654 CAPVGGGGSQGNLIF TRAV17*01 TRAJ42*01 CASSPRSTDTQYF TRBV19*01 TRBJ2-3*01 HLA-A*02:01 B2M MHCI GILGFVFTL M1 InfluenzaA PMID:34811538 tetramer-sort yes amplicon-seq transitional T cells between effector and memory populations T1D T1D_1 chip0420_867296 PBMC +655 CAESYDGYALNF TRAV5*01 TRAJ41*01 HLA-A*02:01 B2M MHCI GLCTLVAML BLMF1 EBV PMID:34811538 tetramer-sort yes amplicon-seq effector memory T cells T1D T1D_2 chip0420_547758 PBMC +656 CSVVSPNTEAFF TRBV29-1*01 TRBJ1-1*01 HLA-A*02:01 B2M MHCI LLAGIGTVPI PGT HomoSapiens PMID:34811538 tetramer-sort yes amplicon-seq transitional T cells between effector and memory populations T1D T1D_2 chip0420_64191 PBMC +657 CAEKAWgg??gtYPNVTF TRAV5*01 TRAJ13*01 CSVGTGGTNEKLFF TRBV29-1*01 TRBJ1-4*01 HLA-A*02:01 B2M MHCI GLCTLVAML BLMF1 EBV PMID:34811538 tetramer-sort yes amplicon-seq effector T cells T1D T1D_2 chip0420_835135 PBMC +658 CAWSDQLGAARELFF TRBV30*01 TRBJ2-2*01 HLA-A*02:01 B2M MHCI YVLDHLIVV BRLF1 EBV PMID:34811538 tetramer-sort yes amplicon-seq effector memory T cells T1D T1D_2 chip0420_824694 PBMC +659 CSVGTGGTNEKLFF TRBV29-1*01 TRBJ1-4*01 HLA-A*02:01 B2M MHCI GLCTLVAML BLMF1 EBV PMID:34811538 tetramer-sort yes amplicon-seq effector memory T cells T1D T1D_2 chip0420_575704 PBMC +660 CVVNGRDSSYKLIF TRAV12-1*01 TRAJ12*01 CASSAGRVHPGTQYF TRBV2*01 TRBJ2-5*01 HLA-A*02:01 B2M MHCI GLCTLVAML BLMF1 EBV PMID:34811538 tetramer-sort yes amplicon-seq effector memory T cells T1D T1D_1 chip0420_502235 PBMC +661 CSVGTPPTNEKLFF TRBV29-1*01 TRBJ1-4*01 HLA-A*02:01 B2M MHCI GLCTLVAML BLMF1 EBV PMID:34811538 tetramer-sort yes amplicon-seq effector T cells T1D T1D_2 chip0420_479478 PBMC +663 CAWSDQLGAARELFF TRBV30*01 TRBJ2-2*01 HLA-A*02:01 B2M MHCI YVLDHLIVV BRLF1 EBV PMID:34811538 tetramer-sort yes amplicon-seq effector T cells T1D T1D_2 chip0420_411619 PBMC +664 CAVSDtt?GNAMRF TRAV8-4*01 TRAJ43*01 CSVGSRGTNEKLFF TRBV29-1*01 TRBJ1-4*01 HLA-A*02:01 B2M MHCI GLCTLVAML BLMF1 EBV PMID:34811538 tetramer-sort yes amplicon-seq effector memory T cells T1D T1D_1 chip0420_406916 PBMC +665 CASLTPGASKIIF TRAV8-6*01 TRAJ3*01 CASSSGLVAPGELFF TRBV2*01 TRBJ2-2*01 HLA-A*02:01 B2M MHCI GLCTLVAML BLMF1 EBV PMID:34811538 tetramer-sort yes amplicon-seq effector T cells T1D T1D_2 chip0420_845544 PBMC +666 CAFGGLTF TRAV8-1*01 TRAJ22*01 HLA-A*02:01 B2M MHCI YVLDHLIVV BRLF1 EBV PMID:34811538 tetramer-sort yes amplicon-seq effector memory T cells T1D T1D_2 chip0420_432367 PBMC +667 CSVGSRGTNEKLFF TRBV29-1*01 TRBJ1-4*01 HLA-A*02:01 B2M MHCI GLCTLVAML BLMF1 EBV PMID:34811538 tetramer-sort yes amplicon-seq effector memory T cells T1D T1D_1 chip0420_773915 PBMC +668 CASRMGAGDTQYF TRBV10-2*01 TRBJ2-3*01 HLA-A*02:01 B2M MHCI GLCTLVAML BLMF1 EBV PMID:34811538 tetramer-sort yes amplicon-seq effector memory T cells T1D T1D_2 chip0420_791163 PBMC +669 CAWSVQLAGVDEQYF TRBV30*01 TRBJ2-7*01 HLA-A*02:01 B2M MHCI YVLDHLIVV BRLF1 EBV PMID:34811538 tetramer-sort yes amplicon-seq effector memory T cells T1D T1D_2 chip0420_573605 PBMC +670 CSVGTGGTNEKLFF TRBV29-1*01 TRBJ1-4*01 HLA-A*02:01 B2M MHCI GLCTLVAML BLMF1 EBV PMID:34811538 tetramer-sort yes amplicon-seq effector T cells T1D T1D_2 chip0420_882804 PBMC +671 CSVGSRGTNEKLFF TRBV29-1*01 TRBJ1-4*01 HLA-A*02:01 B2M MHCI GLCTLVAML BLMF1 EBV PMID:34811538 tetramer-sort yes amplicon-seq effector memory T cells T1D T1D_1 chip0420_868762 PBMC +672 CSVGTGGTNEKLFF TRBV29-1*01 TRBJ1-4*01 HLA-A*02:01 B2M MHCI GLCTLVAML BLMF1 EBV PMID:34811538 tetramer-sort yes amplicon-seq effector memory T cells T1D T1D_2 chip0420_198483 PBMC +673 CPVSPtt?GNALRF TRAV8-4*01 TRAJ43*01 HLA-A*02:01 B2M MHCI GLCTLVAML BLMF1 EBV PMID:34811538 tetramer-sort yes amplicon-seq effector T cells T1D T1D_1 chip0420_647386 PBMC +675 CVVNGRDCRCKLVF TRAV12-1*01 TRAJ12*01 CASSSGLVAPGELFF TRBV2*01 TRBJ2-2*01 HLA-A*02:01 B2M MHCI GLCTLVAML BLMF1 EBV PMID:34811538 tetramer-sort yes amplicon-seq effector memory T cells T1D T1D_2 chip0420_600386 PBMC +676 CVVNGRDSSYKLIF TRAV12-1*01 TRAJ12*01 CASSSGLVAPGELFF TRBV2*01 TRBJ2-2*01 HLA-A*02:01 B2M MHCI GLCTLVAML BLMF1 EBV PMID:34811538 tetramer-sort yes amplicon-seq effector memory T cells T1D T1D_2 chip0420_849362 PBMC +677 CASSSGLVAPGELFF TRBV2*01 TRBJ2-2*01 HLA-A*02:01 B2M MHCI GLCTLVAML BLMF1 EBV PMID:34811538 tetramer-sort yes amplicon-seq effector memory T cells T1D T1D_2 chip0420_451059 PBMC +678 CADLRGGRLIF TRAV5*01 TRAJ23*01 CSVGDTFYGYTF TRBV29-1*01 TRBJ1-2*01 HLA-A*02:01 B2M MHCI GLCTLVAML BLMF1 EBV PMID:34811538 tetramer-sort yes amplicon-seq effector memory T cells T1D T1D_2 chip0420_331890 PBMC +681 CAAPLLc?cPAPLLF TRAV13-2*01 TRAJ34*01 CASSSGQVLPNEQFF TRBV2*01 TRBJ2-1*01 HLA-A*02:01 B2M MHCI GLCTLVAML BLMF1 EBV PMID:34811538 tetramer-sort yes amplicon-seq effector memory T cells T1D T1D_1 chip0420_622859 PBMC +682 CASSPSTSGSGETQYF TRBV3-1*01 TRBJ2-5*01 HLA-A*02:01 B2M MHCI YVLDHLIVV BRLF1 EBV PMID:34811538 tetramer-sort yes amplicon-seq effector memory T cells T1D T1D_2 chip0420_153602 PBMC +683 CASRAGAGDTQYF TRBV10-2*01 TRBJ2-3*01 HLA-A*02:01 B2M MHCI GLCTLVAML BLMF1 EBV PMID:34811538 tetramer-sort yes amplicon-seq effector memory T cells T1D T1D_2 chip0420_540345 PBMC +684 CASRAGAGDTQYF TRBV10-2*01 TRBJ2-3*01 HLA-A*02:01 B2M MHCI GLCTLVAML BLMF1 EBV PMID:34811538 tetramer-sort yes amplicon-seq effector memory T cells T1D T1D_2 chip0420_269695 PBMC +685 CALGGLTF TRAV8-1*01 TRAJ22*01 HLA-A*02:01 B2M MHCI YVLDHLIVV BRLF1 EBV PMID:34811538 tetramer-sort yes amplicon-seq effector memory T cells T1D T1D_2 chip0420_160312 PBMC +686 CASSSRQVLPNEQFF TRBV2*01 TRBJ2-1*01 HLA-A*02:01 B2M MHCI LLAGIGTVPI PGT HomoSapiens PMID:34811538 tetramer-sort yes amplicon-seq effector memory T cells T1D T1D_1 chip0420_536346 PBMC +688 CAWSDQLGAARELFF TRBV30*01 TRBJ2-2*01 HLA-A*02:01 B2M MHCI YVLDHLIVV BRLF1 EBV PMID:34811538 tetramer-sort yes amplicon-seq effector T cells T1D T1D_2 chip0420_837792 PBMC +689 CASSPGDARGEQYF TRBV5-6*01 TRBJ2-7*01 HLA-A*02:01 B2M MHCI YLLEMLWRL LMP1 EBV PMID:34811538 tetramer-sort yes amplicon-seq central memory T cells T1D T1D_1 chip0420_688775 PBMC +690 CAVRATG??cRASKYIF TRAV8-6*01 TRAJ40*01 CASSPDQTSSYNEQFF TRBV27*01 TRBJ2-1*01 HLA-A*02:01 B2M MHCI YVLDHLIVV BRLF1 EBV PMID:34811538 tetramer-sort yes amplicon-seq effector T cells T1D T1D_1 chip0420_753653 PBMC +691 CASRMGAGDTQYF TRBV10-2*01 TRBJ2-3*01 HLA-A*02:01 B2M MHCI GLCTLVAML BLMF1 EBV PMID:34811538 tetramer-sort yes amplicon-seq effector memory T cells T1D T1D_2 chip0420_109333 PBMC +692 CAGQSGGTSYGKLTF TRAV25*01 TRAJ52*01 CASSSGLVAPGELFF TRBV2*01 TRBJ2-2*01 HLA-A*02:01 B2M MHCI GLCTLVAML BLMF1 EBV PMID:34811538 tetramer-sort yes amplicon-seq effector memory T cells T1D T1D_2 chip0420_167540 PBMC +693 CAEKAWgg??gtYQTVTF TRAV5*01 TRAJ13*01 CSVGTGGTNEKLFF TRBV29-1*01 TRBJ1-4*01 HLA-A*02:01 B2M MHCI GLCTLVAML BLMF1 EBV PMID:34811538 tetramer-sort yes amplicon-seq effector memory T cells T1D T1D_2 chip0420_840890 PBMC +694 CSSQEGGYGYTF TRBV29-1*01 TRBJ1-2*01 HLA-A*02:01 B2M MHCI GLCTLVAML BLMF1 EBV PMID:34811538 tetramer-sort yes amplicon-seq effector memory T cells T1D T1D_2 chip0420_287340 PBMC +695 CASRMGAGDTQYF TRBV10-2*01 TRBJ2-3*01 HLA-A*02:01 B2M MHCI GLCTLVAML BLMF1 EBV PMID:34811538 tetramer-sort yes amplicon-seq effector memory T cells T1D T1D_2 chip0420_623863 PBMC +698 CVAIF*Vga?GSNYKLTF TRAV29/DV5*01 TRAJ53*01 CASGSTGPGDSPLHF TRBV12-5*01 TRBJ1-6*01 HLA-B*08:01 B2M MHCI RAKFKQLL BZLF1 EBV PMID:34811538 tetramer-sort yes amplicon-seq effector T cells healthy healthy_2 chip0420_363895 PBMC +699 CASSQSPGGTQYF TRBV14*01 TRBJ2-3*01 HLA-A*02:01 B2M MHCI GLCTLVAML BLMF1 EBV PMID:34811538 tetramer-sort yes amplicon-seq effector memory T cells T1D T1D_1 chip0420_239756 PBMC +700 CAESTSGGTLIF TRAV5*01 TRAJ23*01 CSVGTGGTNEKLFF TRBV29-1*01 TRBJ1-4*01 HLA-A*02:01 B2M MHCI GLCTLVAML BLMF1 EBV PMID:34811538 tetramer-sort yes amplicon-seq effector memory T cells T1D T1D_2 chip0420_481588 PBMC +702 CVVSAEIMg?tGATNKLLF TRAV10*01 TRAJ32*01 HLA-A*02:01 B2M MHCI YVLDHLIVV BRLF1 EBV PMID:34811538 tetramer-sort yes amplicon-seq effector memory T cells T1D T1D_1 chip0420_236732 PBMC +703 CGTEEPNDYKLSF TRAV30*01 TRAJ20*01 HLA-A*02:01 B2M MHCI GLCTLVAML BLMF1 EBV PMID:34811538 tetramer-sort yes amplicon-seq effector memory T cells T1D T1D_1 chip0420_465183 PBMC +704 CAMSFSNFGNEKLTF TRAV12-3*01 TRAJ48*01 CASSLKGDRVTDTQYF TRBV7-3*01 TRBJ2-3*01 HLA-A*02:01 B2M MHCI LLAGIGTVPI PGT HomoSapiens PMID:34811538 tetramer-sort yes amplicon-seq Naive T cells T1D T1D_1 chip0420_542338 PBMC +705 CAGAGGGRQGNLIF TRAV27*01 TRAJ42*01 HLA-A*02:01 B2M MHCI GILGFVFTL M1 InfluenzaA PMID:34811538 tetramer-sort yes amplicon-seq transitional T cells between effector and memory populations T1D T1D_1 chip0420_859010 PBMC +706 CASRMGAGDTQYF TRBV10-2*01 TRBJ2-3*01 HLA-A*02:01 B2M MHCI GLCTLVAML BLMF1 EBV PMID:34811538 tetramer-sort yes amplicon-seq effector memory T cells T1D T1D_2 chip0420_846368 PBMC +709 CSVGTGGTNEKLFF TRBV29-1*01 TRBJ1-4*01 HLA-A*02:01 B2M MHCI GLCTLVAML BLMF1 EBV PMID:34811538 tetramer-sort yes amplicon-seq effector memory T cells T1D T1D_2 chip0420_698961 PBMC +711 CASSPDQTSSYNEQFF TRBV27*01 TRBJ2-1*01 HLA-A*02:01 B2M MHCI YVLDHLIVV BRLF1 EBV PMID:34811538 tetramer-sort yes amplicon-seq effector memory T cells T1D T1D_1 chip0420_216098 PBMC +712 CSVGTGGTNEKLFF TRBV29-1*01 TRBJ1-4*01 HLA-A*02:01 B2M MHCI GLCTLVAML BLMF1 EBV PMID:34811538 tetramer-sort yes amplicon-seq effector memory T cells T1D T1D_2 chip0420_172908 PBMC +713 CASLAALPSAQSF TRBV6-1*01 TRBJ2-7*01 HLA-A*02:01 B2M MHCI YVLDHLIVV BRLF1 EBV PMID:34811538 tetramer-sort yes amplicon-seq effector memory T cells T1D T1D_1 chip0420_26652 PBMC +714 CAVVSNSGYALNF TRAV12-2*01 TRAJ41*01 CASSSGGNVDTQYF TRBV7-3*01 TRBJ2-3*01 HLA-A*02:01 B2M MHCI GLCTLVAML BLMF1 EBV PMID:34811538 tetramer-sort yes amplicon-seq effector memory T cells T1D T1D_1 chip0420_11199 PBMC +715 CSVGTGGTNEKLFF TRBV29-1*01 TRBJ1-4*01 HLA-A*02:01 B2M MHCI GLCTLVAML BLMF1 EBV PMID:34811538 tetramer-sort yes amplicon-seq effector memory T cells T1D T1D_2 chip0420_374965 PBMC +716 CATDGYAGNMLTF TRAV17*01 TRAJ39*01 CASSLQSSTEAFF TRBV25-1*01 TRBJ1-1*01 HLA-A*02:01 B2M MHCI GILGFVFTL M1 InfluenzaA PMID:34811538 tetramer-sort yes amplicon-seq transitional T cells between effector and memory populations T1D T1D_1 chip0420_503780 PBMC +717 CSARGQAPEAFF TRBV20-1*01 TRBJ1-1*01 HLA-A*02:01 B2M MHCI KIADPICTFI ZNT8 HomoSapiens PMID:34811538 tetramer-sort yes amplicon-seq Naive T cells T1D T1D_1 chip0420_734552 PBMC +720 CAVDPWGNQFYF TRAV39*01 TRAJ49*01 CATQQGRDSQPQHF TRBV28*01 TRBJ1-5*01 HLA-A*02:01 B2M MHCI GLCTLVAML BLMF1 EBV PMID:34811538 tetramer-sort yes amplicon-seq effector memory T cells T1D T1D_1 chip0420_112272 PBMC +722 CALGGGGADGLTF TRAV19*01 TRAJ45*01 CASSDDRGNTIYF TRBV2*01 TRBJ1-3*01 HLA-A*02:01 B2M MHCI YLLEMLWRL LMP1 EBV PMID:34811538 tetramer-sort yes amplicon-seq central memory T cells T1D T1D_1 chip0420_128645 PBMC +723 CASSVGAGETQYF TRBV19*01 TRBJ2-5*01 HLA-A*02:01 B2M MHCI GLCTLVAML BLMF1 EBV PMID:34811538 tetramer-sort yes amplicon-seq effector T cells T1D T1D_1 chip0420_759450 PBMC +725 CAVVSHCGDALNF TRAV21*01 TRAJ41*01 CASSSGGNVDTQYF TRBV7-3*01 TRBJ2-3*01 HLA-A*02:01 B2M MHCI GLCTLVAML BLMF1 EBV PMID:34811538 tetramer-sort yes amplicon-seq effector memory T cells T1D T1D_1 chip0420_802865 PBMC +726 CAVPNFGNEKLTF TRAV12-2*01 TRAJ48*01 CASSLGPGQPQHF TRBV27*01 TRBJ1-5*01 HLA-A*02:01 B2M MHCI ALAGIGILTV MART1 HomoSapiens PMID:34811538 tetramer-sort yes amplicon-seq Naive T cells T1D T1D_1 chip0420_6583 PBMC +727 CAVNTGGFKTIF TRAV12-2*01 TRAJ9*01 HLA-A*02:01 B2M MHCI ALAGIGILTV MART1 HomoSapiens PMID:34811538 tetramer-sort yes amplicon-seq transitional T cells between effector and memory populations T1D T1D_2 chip0420_407407 PBMC +729 CASSDGRVHPGTQYF TRBV2*01 TRBJ2-5*01 HLA-A*02:01 B2M MHCI GLCTLVAML BLMF1 EBV PMID:34811538 tetramer-sort yes amplicon-seq effector memory T cells T1D T1D_1 chip0420_342603 PBMC +730 CSVGGTFYGYTF TRBV29-1*01 TRBJ1-2*01 HLA-A*02:01 B2M MHCI GLCTLVAML BLMF1 EBV PMID:34811538 tetramer-sort yes amplicon-seq effector memory T cells T1D T1D_2 chip0420_198022 PBMC +731 CAESTSGGKLIF TRAV5*01 TRAJ23*01 CSVGSRGTNEKLFF TRBV29-1*01 TRBJ1-4*01 HLA-A*02:01 B2M MHCI GLCTLVAML BLMF1 EBV PMID:34811538 tetramer-sort yes amplicon-seq effector memory T cells T1D T1D_1 chip0420_460460 PBMC +732 CAVDPWGNQFYF TRAV39*01 TRAJ49*01 CATQQGRDSQPQHF TRBV28*01 TRBJ1-5*01 HLA-A*02:01 B2M MHCI GLCTLVAML BLMF1 EBV PMID:34811538 tetramer-sort yes amplicon-seq effector memory T cells T1D T1D_1 chip0420_454352 PBMC +734 CATGGGADGLTF TRAV12-2*01 TRAJ45*01 HLA-A*02:01 B2M MHCI LLAGIGTVPI PGT HomoSapiens PMID:34811538 tetramer-sort yes amplicon-seq Naive T cells T1D T1D_1 chip0420_141861 PBMC +736 CVVNGGDSSYKLIF TRAV12-1*01 TRAJ12*01 CASSSGQVLPNEQFF TRBV2*01 TRBJ2-1*01 HLA-A*02:01 B2M MHCI GLCTLVAML BLMF1 EBV PMID:34811538 tetramer-sort yes amplicon-seq effector memory T cells T1D T1D_1 chip0420_198113 PBMC +737 CSVGGSFYGYTF TRBV29-1*01 TRBJ1-2*01 HLA-A*02:01 B2M MHCI GLCTLVAML BLMF1 EBV PMID:34811538 tetramer-sort yes amplicon-seq effector memory T cells T1D T1D_2 chip0420_609441 PBMC +738 CASSTGQLSNTGELFF TRBV9*01 TRBJ2-2*01 HLA-A*02:01 B2M MHCI GLCTLVAML BLMF1 EBV PMID:34811538 tetramer-sort yes amplicon-seq effector memory T cells T1D T1D_1 chip0420_534110 PBMC +739 CASSHALENTGELFF TRBV3-1*01 TRBJ2-2*01 HLA-A*02:01 B2M MHCI YVLDHLIVV BRLF1 EBV PMID:34811538 tetramer-sort yes amplicon-seq effector T cells T1D T1D_2 chip0420_414613 PBMC +740 CASLTPGASKIIF TRAV8-6*01 TRAJ3*01 CASSSELVAPGELFF TRBV2*01 TRBJ2-2*01 HLA-A*02:01 B2M MHCI GLCTLVAML BLMF1 EBV PMID:34811538 tetramer-sort yes amplicon-seq effector T cells T1D T1D_2 chip0420_500803 PBMC +741 CAESTSGGTLIF TRAV5*01 TRAJ23*01 HLA-A*02:01 B2M MHCI GLCTLVAML BLMF1 EBV PMID:34811538 tetramer-sort yes amplicon-seq effector memory T cells T1D T1D_2 chip0420_348154 PBMC +742 CASSILAGGSGANVLTF TRBV19*01 TRBJ2-6*01 HLA-A*02:01 B2M MHCI LAVDGVLSV ZNT8 HomoSapiens PMID:34811538 tetramer-sort yes amplicon-seq Naive T cells T1D T1D_2 chip0420_653562 PBMC +743 CAASGGGSHGNLIF TRAV13-1*01 TRAJ42*01 CALVSGc?cQETQYF TRBV19*01 TRBJ2-5*01 HLA-A*02:01 B2M MHCI GILGFVFTL M1 InfluenzaA PMID:34811538 tetramer-sort yes amplicon-seq transitional T cells between effector and memory populations T1D T1D_1 chip0420_70328 PBMC +744 CSVGSRGTNEKLFF TRBV29-1*01 TRBJ1-4*01 HLA-A*02:01 B2M MHCI GLCTLVAML BLMF1 EBV PMID:34811538 tetramer-sort yes amplicon-seq effector memory T cells T1D T1D_1 chip0420_109585 PBMC +745 CAVVSNSGYALNF TRAV21*01 TRAJ41*01 CASSSGGNVDTQYF TRBV7-3*01 TRBJ2-3*01 HLA-A*02:01 B2M MHCI GLCTLVAML BLMF1 EBV PMID:34811538 tetramer-sort yes amplicon-seq effector memory T cells T1D T1D_1 chip0420_226078 PBMC +746 CAGPGSSNTGKLIF TRAV25*01 TRAJ37*01 CASSYMSGAAFF TRBV6-2*01,TRBV6-3*01 TRBJ1-1*01 HLA-A*02:01 B2M MHCI YVLDHLIVV BRLF1 EBV PMID:34811538 tetramer-sort yes amplicon-seq effector memory T cells T1D T1D_2 chip0420_819309 PBMC +747 CAVDPWGNQFYF TRAV39*01 TRAJ49*01 CATQQGRDSQPQHF TRBV28*01 TRBJ1-5*01 HLA-A*02:01 B2M MHCI GLCTLVAML BLMF1 EBV PMID:34811538 tetramer-sort yes amplicon-seq effector memory T cells T1D T1D_1 chip0420_591736 PBMC +750 CASSQTPDTQYF TRBV3-1*01 TRBJ2-5*01 HLA-A*02:01 B2M MHCI YVLDHLIVV BRLF1 EBV PMID:34811538 tetramer-sort yes amplicon-seq effector memory T cells T1D T1D_2 chip0420_126741 PBMC +751 CSAAPGITGQPQHF TRBV20-1*01 TRBJ1-5*01 HLA-A*02:01 B2M MHCI LLAGIGTVPI PGT HomoSapiens PMID:34811538 tetramer-sort yes amplicon-seq Naive T cells healthy healthy_2 chip0420_616666 PBMC +752 CASRPVLGGASEAFF TRBV19*01 TRBJ1-1*01 HLA-A*02:01 B2M MHCI YVLDHLIVV BRLF1 EBV PMID:34811538 tetramer-sort yes amplicon-seq effector memory T cells T1D T1D_2 chip0420_364416 PBMC +753 CSVGTGGTNEKLFF TRBV29-1*01 TRBJ1-4*01 HLA-A*02:01 B2M MHCI GLCTLVAML BLMF1 EBV PMID:34811538 tetramer-sort yes amplicon-seq effector T cells T1D T1D_2 chip0420_766067 PBMC +754 CAGLFRg?aAQKLVF TRAV35*01 TRAJ54*01 HLA-A*02:01 B2M MHCI VAANIVLTV ZNT8 HomoSapiens PMID:34811538 tetramer-sort yes amplicon-seq Naive T cells T1D T1D_2 chip0420_725158 PBMC +755 CASSPSTSGSGETQYF TRBV3-1*01 TRBJ2-5*01 HLA-A*02:01 B2M MHCI YVLDHLIVV BRLF1 EBV PMID:34811538 tetramer-sort yes amplicon-seq effector memory T cells T1D T1D_2 chip0420_720174 PBMC +756 CASSPDQTSSYNEQFF TRBV27*01 TRBJ2-1*01 HLA-A*02:01 B2M MHCI YVLDHLIVV BRLF1 EBV PMID:34811538 tetramer-sort yes amplicon-seq effector T cells T1D T1D_1 chip0420_448385 PBMC +757 CSVGTGGTNEKLFF TRBV29-1*01 TRBJ1-4*01 HLA-A*02:01 B2M MHCI GLCTLVAML BLMF1 EBV PMID:34811538 tetramer-sort yes amplicon-seq effector T cells T1D T1D_2 chip0420_388965 PBMC +758 CSVGTGGTNEKLFF TRBV29-1*01 TRBJ1-4*01 HLA-A*02:01 B2M MHCI GLCTLVAML BLMF1 EBV PMID:34811538 tetramer-sort yes amplicon-seq effector memory T cells T1D T1D_2 chip0420_716678 PBMC +759 CASLTPGASKIIF TRAV8-6*01 TRAJ3*01 CASSSGLVAPGELFF TRBV2*01 TRBJ2-2*01 HLA-A*02:01 B2M MHCI GLCTLVAML BLMF1 EBV PMID:34811538 tetramer-sort yes amplicon-seq effector T cells T1D T1D_2 chip0420_555042 PBMC +761 CAVKVDGQKLLF TRAV8-1*01 TRAJ16*01 CAWSDQLGAARELFF TRBV30*01 TRBJ2-2*01 HLA-A*02:01 B2M MHCI YVLDHLIVV BRLF1 EBV PMID:34811538 tetramer-sort yes amplicon-seq transitional T cells between effector and memory populations T1D T1D_2 chip0420_144432 PBMC +763 CSVGTGGTNEKLFF TRBV29-1*01 TRBJ1-4*01 HLA-A*02:01 B2M MHCI GLCTLVAML BLMF1 EBV PMID:34811538 tetramer-sort yes amplicon-seq effector memory T cells T1D T1D_2 chip0420_749833 PBMC +764 CVVNGRDSSYKLIF TRAV12-1*01 TRAJ12*01 CASSDGRVHPGTQYF TRBV2*01 TRBJ2-5*01 HLA-A*02:01 B2M MHCI GLCTLVAML BLMF1 EBV PMID:34811538 tetramer-sort yes amplicon-seq effector memory T cells T1D T1D_1 chip0420_522869 PBMC +766 CAVKDTDKLIF TRAV8-1*01 TRAJ34*01 HLA-A*02:01 B2M MHCI YVLDHLIVV BRLF1 EBV PMID:34811538 tetramer-sort yes amplicon-seq effector memory T cells T1D T1D_1 chip0420_765985 PBMC +767 CSVGTGGTNEKLFF TRBV29-1*01 TRBJ1-4*01 HLA-A*02:01 B2M MHCI GLCTLVAML BLMF1 EBV PMID:34811538 tetramer-sort yes amplicon-seq effector memory T cells T1D T1D_2 chip0420_624054 PBMC +768 CSVGGSFYGYTF TRBV29-1*01 TRBJ1-2*01 HLA-A*02:01 B2M MHCI GLCTLVAML BLMF1 EBV PMID:34811538 tetramer-sort yes amplicon-seq effector memory T cells T1D T1D_2 chip0420_42249 PBMC +769 CASSVRAGETQYF TRBV19*01 TRBJ2-5*01 HLA-A*02:01 B2M MHCI GILGFVFTL M1 InfluenzaA PMID:34811538 tetramer-sort yes amplicon-seq transitional T cells between effector and memory populations T1D T1D_1 chip0420_523364 PBMC +770 CALYNTDKLIF TRAV9-2*01 TRAJ34*01 HLA-A*02:01 B2M MHCI GLCTLVAML BLMF1 EBV PMID:34811538 tetramer-sort yes amplicon-seq effector memory T cells T1D T1D_1 chip0420_613525 PBMC +771 CASSYMSGEAFF TRBV6-2*01,TRBV6-3*01 TRBJ1-1*01 HLA-A*02:01 B2M MHCI YVLDHLIVV BRLF1 EBV PMID:34811538 tetramer-sort yes amplicon-seq effector memory T cells T1D T1D_2 chip0420_335555 PBMC +772 CSVDQRTGQKKNYGYTF TRBV29-1*01 TRBJ1-2*01 HLA-A*02:01 B2M MHCI GLCTLVAML BLMF1 EBV PMID:34811538 tetramer-sort yes amplicon-seq effector memory T cells T1D T1D_2 chip0420_692299 PBMC +773 CAAYAGHLLTF TRAV29/DV5*01 TRAJ39*01 CASRMGAGDTQYF TRBV10-2*01 TRBJ2-3*01 HLA-A*02:01 B2M MHCI GLCTLVAML BLMF1 EBV PMID:34811538 tetramer-sort yes amplicon-seq effector memory T cells T1D T1D_2 chip0420_128517 PBMC +774 CASSTGQLSNTGELFF TRBV9*01 TRBJ2-2*01 HLA-A*02:01 B2M MHCI GLCTLVAML BLMF1 EBV PMID:34811538 tetramer-sort yes amplicon-seq effector T cells T1D T1D_1 chip0420_675832 PBMC +775 CASNLAGNNEQFF TRBV9*01 TRBJ2-1*01 HLA-A*02:01 B2M MHCI GLCTLVAML BLMF1 EBV PMID:34811538 tetramer-sort yes amplicon-seq effector memory T cells T1D T1D_2 chip0420_729668 PBMC +777 CAATSYTGTASKLTF TRAV8-1*01 TRAJ44*01 CASSLYYNEQFF TRBV12-3*01,TRBV12-4*01 TRBJ2-1*01 HLA-A*02:01 B2M MHCI YLLEMLWRL LMP1 EBV PMID:34811538 tetramer-sort yes amplicon-seq central memory T cells T1D T1D_2 chip0420_779124 PBMC +779 CAESTSGGKLIF TRAV5*01 TRAJ23*01 CSVGTGGTNEKLFF TRBV29-1*01 TRBJ1-4*01 HLA-A*02:01 B2M MHCI GLCTLVAML BLMF1 EBV PMID:34811538 tetramer-sort yes amplicon-seq effector T cells T1D T1D_2 chip0420_425515 PBMC +780 CSVGGTFYGYTF TRBV29-1*01 TRBJ1-2*01 HLA-A*02:01 B2M MHCI GLCTLVAML BLMF1 EBV PMID:34811538 tetramer-sort yes amplicon-seq transitional T cells between effector and memory populations T1D T1D_2 chip0420_278045 PBMC +781 CASSQSRGSLWDTQYF TRBV4-3*01 TRBJ2-3*01 HLA-A*02:01 B2M MHCI YVLDHLIVV BRLF1 EBV PMID:34811538 tetramer-sort yes amplicon-seq effector memory T cells T1D T1D_2 chip0420_587534 PBMC +782 CASYDMNYGGRRGHLVF TRAV19*01 TRAJ42*01 CASSVEAVDVEQYF TRBV9*01 TRBJ2-7*01 HLA-A*02:01 B2M MHCI VLFGLGFAI IGRP HomoSapiens PMID:34811538 tetramer-sort yes amplicon-seq Naive T cells tet_neg chip0420_520225 PBMC +783 CAGRDNNAGNMLTF TRAV35*01 TRAJ39*01 HLA-A*02:01 B2M MHCI GILGFVFTL M1 InfluenzaA PMID:34811538 tetramer-sort yes amplicon-seq transitional T cells between effector and memory populations T1D T1D_1 chip0420_760230 PBMC +784 YVIHGRDSKYKSIF TRAV12-1*01 TRAJ12*01 CASSSGLVAPGELFF TRBV2*01 TRBJ2-2*01 HLA-A*02:01 B2M MHCI GLCTLVAML BLMF1 EBV PMID:34811538 tetramer-sort yes amplicon-seq effector T cells T1D T1D_2 chip0420_844754 PBMC +785 CAVNALDKLIF TRAV8-1*01 TRAJ34*01 CASSEAFLADNEQFF TRBV6-4*01 TRBJ2-1*01 HLA-A*02:01 B2M MHCI YVLDHLIVV BRLF1 EBV PMID:34811538 tetramer-sort yes amplicon-seq effector memory T cells T1D T1D_1 chip0420_799595 PBMC +786 CSVGTGGTNEKLFF TRBV29-1*01 TRBJ1-4*01 HLA-A*02:01 B2M MHCI GLCTLVAML BLMF1 EBV PMID:34811538 tetramer-sort yes amplicon-seq effector memory T cells T1D T1D_2 chip0420_518930 PBMC +787 CSVGTGGTNEKLFF TRBV29-1*01 TRBJ1-4*01 HLA-A*02:01 B2M MHCI GLCTLVAML BLMF1 EBV PMID:34811538 tetramer-sort yes amplicon-seq effector memory T cells T1D T1D_2 chip0420_16957 PBMC +788 CSVGTGGTNEKLFF TRBV29-1*01 TRBJ1-4*01 HLA-A*02:01 B2M MHCI GLCTLVAML BLMF1 EBV PMID:34811538 tetramer-sort yes amplicon-seq effector memory T cells T1D T1D_2 chip0420_62439 PBMC +789 CAVKDTDKLIF TRAV8-1*01 TRAJ34*01 HLA-A*02:01 B2M MHCI YVLDHLIVV BRLF1 EBV PMID:34811538 tetramer-sort yes amplicon-seq effector memory T cells T1D T1D_2 chip0420_850611 PBMC +790 CASRPTLDTQYF TRBV7-9*01 TRBJ2-3*01 HLA-A*02:01 B2M MHCI LLAGIGTVPI PGT HomoSapiens PMID:34811538 tetramer-sort yes amplicon-seq transitional T cells between effector and memory populations T1D T1D_1 chip0420_570973 PBMC +791 CAVGDRTYKYIF TRAV8-3*01 TRAJ40*01 CASSWTASYEQYF TRBV6-2*01,TRBV6-3*01 TRBJ2-7*01 HLA-A*02:01 B2M MHCI YVLDHLIVV BRLF1 EBV PMID:34811538 tetramer-sort yes amplicon-seq effector memory T cells T1D T1D_2 chip0420_271869 PBMC +792 CASSLFSSEQFF TRBV28*01 TRBJ2-1*01 HLA-A*02:01 B2M MHCI YVLDHLIVV BRLF1 EBV PMID:34811538 tetramer-sort yes amplicon-seq effector memory T cells T1D T1D_1 chip0420_210209 PBMC +793 CASSTGQLSNTGELFF TRBV9*01 TRBJ2-2*01 HLA-A*02:01 B2M MHCI GLCTLVAML BLMF1 EBV PMID:34811538 tetramer-sort yes amplicon-seq effector T cells T1D T1D_1 chip0420_373472 PBMC +794 CASSINGGRRDGYTF TRBV19*01 TRBJ1-2*01 HLA-A*02:01 B2M MHCI GILGFVFTL M1 InfluenzaA PMID:34811538 tetramer-sort yes amplicon-seq transitional T cells between effector and memory populations T1D T1D_1 chip0420_807533 PBMC +796 CASRAGAGDTQYF TRBV10-2*01 TRBJ2-3*01 HLA-A*02:01 B2M MHCI GLCTLVAML BLMF1 EBV PMID:34811538 tetramer-sort yes amplicon-seq effector memory T cells T1D T1D_2 chip0420_872539 PBMC +797 CILRRYGGSQGNLIF TRAV26-2*01 TRAJ42*01 CASSPVSGSTYEQYF TRBV3-1*01 TRBJ2-7*01 HLA-A*02:01 B2M MHCI GLCTLVAML BLMF1 EBV PMID:34811538 tetramer-sort yes amplicon-seq effector T cells T1D T1D_1 chip0420_803582 PBMC +798 CASSPVSGSTYEQYF TRBV3-1*01 TRBJ2-7*01 HLA-A*02:01 B2M MHCI GLCTLVAML BLMF1 EBV PMID:34811538 tetramer-sort yes amplicon-seq effector T cells T1D T1D_1 chip0420_678577 PBMC +799 CSSQEGGYGYTF TRBV29-1*01 TRBJ1-2*01 HLA-A*02:01 B2M MHCI GLCTLVAML BLMF1 EBV PMID:34811538 tetramer-sort yes amplicon-seq effector memory T cells T1D T1D_2 chip0420_469196 PBMC +800 CAESTSGGKLIF TRAV5*01 TRAJ23*01 CSVGTGGTNEKLFF TRBV29-1*01 TRBJ1-4*01 HLA-A*02:01 B2M MHCI GLCTLVAML BLMF1 EBV PMID:34811538 tetramer-sort yes amplicon-seq effector memory T cells T1D T1D_2 chip0420_776266 PBMC +801 CADLECW??cNHRKLIW TRAV36/DV7*01 TRAJ38*01 CASSTGQLSNTGELFF TRBV9*01 TRBJ2-2*01 HLA-A*02:01 B2M MHCI GLCTLVAML BLMF1 EBV PMID:34811538 tetramer-sort yes amplicon-seq effector T cells T1D T1D_1 chip0420_838515 PBMC +802 CSVGTGGTNEKLFF TRBV29-1*01 TRBJ1-4*01 HLA-A*02:01 B2M MHCI GLCTLVAML BLMF1 EBV PMID:34811538 tetramer-sort yes amplicon-seq effector memory T cells T1D T1D_2 chip0420_616114 PBMC +803 CASSVRAGETQYF TRBV19*01 TRBJ2-5*01 HLA-A*02:01 B2M MHCI GILGFVFTL M1 InfluenzaA PMID:34811538 tetramer-sort yes amplicon-seq transitional T cells between effector and memory populations T1D T1D_1 chip0420_592275 PBMC +805 CASSYMSGEAFF TRAV9-1*01,TRAV8-1*01 TRAJ40*01 CASSYMSGEAFF TRBV6-2*01,TRBV6-3*01 TRBJ1-1*01 HLA-A*02:01 B2M MHCI YVLDHLIVV BRLF1 EBV PMID:34811538 tetramer-sort yes amplicon-seq effector T cells T1D T1D_2 chip0420_480665 PBMC +806 CSVDQRTGQKKNYGYTF TRBV29-1*01 TRBJ1-2*01 HLA-A*02:01 B2M MHCI GLCTLVAML BLMF1 EBV PMID:34811538 tetramer-sort yes amplicon-seq effector memory T cells T1D T1D_2 chip0420_342982 PBMC +807 CASSLSVLSYNEQFF TRBV27*01 TRBJ2-1*01 HLA-A*02:01 B2M MHCI YVLDHLIVV BRLF1 EBV PMID:34811538 tetramer-sort yes amplicon-seq effector memory T cells T1D T1D_2 chip0420_122062 PBMC +808 CAEAANQAGPALLF TRAV5*01 TRAJ15*01 CASSQSPGGTQYF TRBV14*01 TRBJ2-3*01 HLA-A*02:01 B2M MHCI GLCTLVAML BLMF1 EBV PMID:34811538 tetramer-sort yes amplicon-seq effector memory T cells T1D T1D_1 chip0420_464019 PBMC +809 CASLTPGASKIIF TRAV8-6*01 TRAJ3*01 CASSSGLVAPGELFF TRBV2*01 TRBJ2-2*01 HLA-A*02:01 B2M MHCI GLCTLVAML BLMF1 EBV PMID:34811538 tetramer-sort yes amplicon-seq effector T cells T1D T1D_2 chip0420_137234 PBMC +810 CASSSGQVLPNEQFF TRBV2*01 TRBJ2-1*01 HLA-A*02:01 B2M MHCI GLCTLVAML BLMF1 EBV PMID:34811538 tetramer-sort yes amplicon-seq effector memory T cells T1D T1D_1 chip0420_3147 PBMC +811 CASSELAGTHEQYF TRBV2*01 TRBJ2-7*01 HLA-A*02:01 B2M MHCI LLAGIGTVPI PGT HomoSapiens PMID:34811538 tetramer-sort yes amplicon-seq Naive T cells T1D T1D_1 chip0420_327612 PBMC +812 CAVNGGNKLVF TRAV12-2*01 TRAJ47*01 CSAVTGGGDTEAFF TRBV20-1*01 TRBJ1-1*01 HLA-A*02:01 B2M MHCI ALAGIGILTV MART1 HomoSapiens PMID:34811538 tetramer-sort yes amplicon-seq central memory T cells T1D T1D_2 chip0420_34015 PBMC +813 CASSINGGRRDGYTF TRBV19*01 TRBJ1-2*01 HLA-A*02:01 B2M MHCI GILGFVFTL M1 InfluenzaA PMID:34811538 tetramer-sort yes amplicon-seq transitional T cells between effector and memory populations T1D T1D_1 chip0420_672868 PBMC +814 CATQQGRDSQPQHF TRBV28*01 TRBJ1-5*01 HLA-A*02:01 B2M MHCI GLCTLVAML BLMF1 EBV PMID:34811538 tetramer-sort yes amplicon-seq effector T cells T1D T1D_1 chip0420_450212 PBMC +815 CSVGTGGTNEKLFF TRBV29-1*01 TRBJ1-4*01 HLA-A*02:01 B2M MHCI GLCTLVAML BLMF1 EBV PMID:34811538 tetramer-sort yes amplicon-seq effector T cells T1D T1D_2 chip0420_579671 PBMC +818 CAAYAGNMLTF TRAV29/DV5*01 TRAJ39*01 CANRMGAGDTQYF TRBV10-2*01 TRBJ2-3*01 HLA-A*02:01 B2M MHCI GLCTLVAML BLMF1 EBV PMID:34811538 tetramer-sort yes amplicon-seq effector memory T cells T1D T1D_2 chip0420_843019 PBMC +819 CASGLGAg?gGGYGYTF TRBV27*01 TRBJ1-2*01 HLA-A*02:01 B2M MHCI GILGFVFTL M1 InfluenzaA PMID:34811538 tetramer-sort yes amplicon-seq transitional T cells between effector and memory populations T1D T1D_1 chip0420_617384 PBMC +820 CSVGGSFYGYTF TRBV29-1*01 TRBJ1-2*01 HLA-A*02:01 B2M MHCI GLCTLVAML BLMF1 EBV PMID:34811538 tetramer-sort yes amplicon-seq effector memory T cells T1D T1D_2 chip0420_3698 PBMC +821 CIVSVRYc?aGHTPLVF TRAV26-1*01 TRAJ29*01 HLA-A*02:01 B2M MHCI YVLDHLIVV BRLF1 EBV PMID:34811538 tetramer-sort yes amplicon-seq effector T cells T1D T1D_2 chip0420_89843 PBMC +822 CASSQSRGSLWDTQYF TRBV4-3*01 TRBJ2-3*01 HLA-A*02:01 B2M MHCI YVLDHLIVV BRLF1 EBV PMID:34811538 tetramer-sort yes amplicon-seq effector memory T cells T1D T1D_2 chip0420_449458 PBMC +823 YASSFGAGELFF TRBV19*01 TRBJ2-2*01 HLA-A*02:01 B2M MHCI GILGFVFTL M1 InfluenzaA PMID:34811538 tetramer-sort yes amplicon-seq transitional T cells between effector and memory populations T1D T1D_1 chip0420_858877 PBMC +825 CVVNGRDSSYKLIF TRAV12-1*01 TRAJ12*01 CASSSGLVAPGELFF TRBV2*01 TRBJ2-2*01 HLA-A*02:01 B2M MHCI GLCTLVAML BLMF1 EBV PMID:34811538 tetramer-sort yes amplicon-seq effector memory T cells T1D T1D_2 chip0420_510850 PBMC +826 CSVGTPPTNEKLFF TRBV29-1*01 TRBJ1-4*01 HLA-A*02:01 B2M MHCI GLCTLVAML BLMF1 EBV PMID:34811538 tetramer-sort yes amplicon-seq effector memory T cells T1D T1D_2 chip0420_728345 PBMC +827 CSVTTDRNSNQPQHF TRBV29-1*01 TRBJ1-5*01 HLA-A*02:01 B2M MHCI GLCTLVAML BLMF1 EBV PMID:34811538 tetramer-sort yes amplicon-seq effector memory T cells T1D T1D_1 chip0420_334784 PBMC +828 CSVGTGGTNEKLFF TRBV29-1*01 TRBJ1-4*01 HLA-A*02:01 B2M MHCI GLCTLVAML BLMF1 EBV PMID:34811538 tetramer-sort yes amplicon-seq effector T cells T1D T1D_2 chip0420_298492 PBMC +829 CASSVRAGETQYF TRBV19*01 TRBJ2-5*01 HLA-A*02:01 B2M MHCI GILGFVFTL M1 InfluenzaA PMID:34811538 tetramer-sort yes amplicon-seq transitional T cells between effector and memory populations T1D T1D_1 chip0420_346172 PBMC +830 CGTEEPNDYKLSF TRAV30*01 TRAJ20*01 CASSTGQLSNTGELFF TRBV9*01 TRBJ2-2*01 HLA-A*02:01 B2M MHCI GLCTLVAML BLMF1 EBV PMID:34811538 tetramer-sort yes amplicon-seq effector memory T cells T1D T1D_1 chip0420_16541 PBMC +831 CASSRRTLNSGANVLTF TRBV13*01 TRBJ2-6*01 HLA-A*02:01 B2M MHCI YVLDHLIVV BRLF1 EBV PMID:34811538 tetramer-sort yes amplicon-seq transitional T cells between effector and memory populations T1D T1D_2 chip0420_383755 PBMC +832 CAESTSGGKLIF TRAV5*01 TRAJ23*01 CSVGTGGTNEKLFF TRBV29-1*01 TRBJ1-4*01 HLA-A*02:01 B2M MHCI GLCTLVAML BLMF1 EBV PMID:34811538 tetramer-sort yes amplicon-seq effector memory T cells T1D T1D_2 chip0420_301564 PBMC +833 CAAPPPNAGNMLPF TRAV29/DV5*01 TRAJ39*01 CASSPGTGGHEQYF TRBV7-9*01 TRBJ2-7*01 HLA-A*02:01 B2M MHCI GLCTLVAML BLMF1 EBV PMID:34811538 tetramer-sort yes amplicon-seq effector memory T cells T1D T1D_2 chip0420_857903 PBMC +834 CASSIGQTGELFF TRBV19*01 TRBJ2-2*01 HLA-A*02:01 B2M MHCI KIVALGINAV POL HCV PMID:34811538 tetramer-sort yes amplicon-seq effector memory T cells T1D T1D_2 chip0420_654435 PBMC +835 CSVDQRTGQKKNYGYTF TRBV29-1*01 TRBJ1-2*01 HLA-A*02:01 B2M MHCI GLCTLVAML BLMF1 EBV PMID:34811538 tetramer-sort yes amplicon-seq effector T cells T1D T1D_2 chip0420_426003 PBMC +836 CASSPVSGSTYEQYF TRBV3-1*01 TRBJ2-7*01 HLA-A*02:01 B2M MHCI GLCTLVAML BLMF1 EBV PMID:34811538 tetramer-sort yes amplicon-seq effector memory T cells T1D T1D_1 chip0420_40871 PBMC +837 CVVNPPHDYKLSF TRAV12-1*01 TRAJ20*01 CASSVGVLSAGELFF TRBV9*01 TRBJ2-2*01 HLA-A*02:01 B2M MHCI GLCTLVAML BLMF1 EBV PMID:34811538 tetramer-sort yes amplicon-seq effector memory T cells T1D T1D_2 chip0420_835104 PBMC +839 CASRMGAGDTQYF TRBV10-2*01 TRBJ2-3*01 HLA-A*02:01 B2M MHCI GLCTLVAML BLMF1 EBV PMID:34811538 tetramer-sort yes amplicon-seq effector memory T cells T1D T1D_2 chip0420_377847 PBMC +840 CAAYAGNMLTF TRAV29/DV5*01 TRAJ39*01 CASRMGAGDTQYF TRBV10-2*01 TRBJ2-3*01 HLA-A*02:01 B2M MHCI GLCTLVAML BLMF1 EBV PMID:34811538 tetramer-sort yes amplicon-seq effector memory T cells T1D T1D_2 chip0420_32554 PBMC +841 CSARRTGQETQYF TRBV20-1*01 TRBJ2-5*01 HLA-A*02:01 B2M MHCI RGPGRAFVTI GP160 HIV-1 PMID:34811538 tetramer-sort yes amplicon-seq Naive T cells T1D T1D_1 chip0420_314945 PBMC +842 CSVGGSFYGHTF TRBV29-1*01 TRBJ1-2*01 HLA-A*02:01 B2M MHCI YVLDHLIVV BRLF1 EBV PMID:34811538 tetramer-sort yes amplicon-seq effector T cells T1D T1D_2 chip0420_159956 PBMC +843 CASSGGAVAPSEQFF TRBV2*01 TRBJ2-1*01 HLA-A*02:01 B2M MHCI GLCTLVAML BLMF1 EBV PMID:34811538 tetramer-sort yes amplicon-seq effector memory T cells T1D T1D_2 chip0420_745892 PBMC +845 CASEGTGRRALTF TRAV12-2*01 TRAJ5*01 HLA-A*02:01 B2M MHCI LLAGIGTVPI PGT HomoSapiens PMID:34811538 tetramer-sort yes amplicon-seq Naive T cells T1D T1D_1 chip0420_622337 PBMC +847 CAVLMDSNYQLIW TRAV21*01 TRAJ33*01 CASSEDGMNTEAFF TRBV10-2*01 TRBJ1-1*01 HLA-A*02:01 B2M MHCI CLGGLLTMV LMP2A EBV PMID:34811538 tetramer-sort yes amplicon-seq effector memory T cells T1D T1D_2 chip0420_143693 PBMC +848 CSVGGSFYGYTF TRBV29-1*01 TRBJ1-2*01 HLA-A*02:01 B2M MHCI GLCTLVAML BLMF1 EBV PMID:34811538 tetramer-sort yes amplicon-seq effector memory T cells T1D T1D_2 chip0420_533255 PBMC +849 CAMREGRDSNYQLIW TRAV14/DV4*01 TRAJ33*01 CASSLGDRLVTDTQYF TRBV5-1*01 TRBJ2-3*01 HLA-A*02:01 B2M MHCI GLCTLVAML BLMF1 EBV PMID:34811538 tetramer-sort yes amplicon-seq effector memory T cells T1D T1D_2 chip0420_37756 PBMC +851 CASSPVSGSTYEQYF TRBV3-1*01 TRBJ2-7*01 HLA-A*02:01 B2M MHCI GLCTLVAML BLMF1 EBV PMID:34811538 tetramer-sort yes amplicon-seq effector T cells T1D T1D_1 chip0420_462877 PBMC +852 CSVGGSFYGYTF TRBV29-1*01 TRBJ1-2*01 HLA-A*02:01 B2M MHCI GLCTLVAML BLMF1 EBV PMID:34811538 tetramer-sort yes amplicon-seq effector memory T cells T1D T1D_2 chip0420_147587 PBMC +855 CAEAANQAGTALIF TRAV5*01 TRAJ15*01 CASSQSPGGTQYF TRBV14*01 TRBJ2-3*01 HLA-A*02:01 B2M MHCI GLCTLVAML BLMF1 EBV PMID:34811538 tetramer-sort yes amplicon-seq effector T cells T1D T1D_1 chip0420_437584 PBMC +856 CAVRLGYGGATNKLIF TRAV41*01 TRAJ32*01 CASSVGGEAYEQYF TRBV9*01 TRBJ2-7*01 HLA-A*02:01 B2M MHCI GLCTLVAML BLMF1 EBV PMID:34811538 tetramer-sort yes amplicon-seq effector memory T cells T1D T1D_1 chip0420_52469 PBMC +857 CGTQENDSWGKLQF TRAV30*01 TRAJ24*01 CASSVRAGETQYF TRBV19*01 TRBJ2-5*01 HLA-A*02:01 B2M MHCI GILGFVFTL M1 InfluenzaA PMID:34811538 tetramer-sort yes amplicon-seq transitional T cells between effector and memory populations T1D T1D_1 chip0420_269775 PBMC +858 CAESTSGGKLIF TRAV5*01 TRAJ23*01 CSVGTGGTNEKLFF TRBV29-1*01 TRBJ1-4*01 HLA-A*02:01 B2M MHCI GLCTLVAML BLMF1 EBV PMID:34811538 tetramer-sort yes amplicon-seq effector memory T cells T1D T1D_2 chip0420_16834 PBMC +859 CASRMGAGDTQYF TRBV10-2*01 TRBJ2-3*01 HLA-A*02:01 B2M MHCI GLCTLVAML BLMF1 EBV PMID:34811538 tetramer-sort yes amplicon-seq effector memory T cells T1D T1D_2 chip0420_579157 PBMC +860 CSVDQRTGQKKNYGYTF TRBV29-1*01 TRBJ1-2*01 HLA-A*02:01 B2M MHCI GLCTLVAML BLMF1 EBV PMID:34811538 tetramer-sort yes amplicon-seq effector memory T cells T1D T1D_2 chip0420_109424 PBMC +861 CAESTSGGTLIF TRAV5*01 TRAJ23*01 CSVGTGGTNEKLFF TRBV29-1*01 TRBJ1-4*01 HLA-A*02:01 B2M MHCI GLCTLVAML BLMF1 EBV PMID:34811538 tetramer-sort yes amplicon-seq effector T cells T1D T1D_2 chip0420_691159 PBMC +862 CAVKDTDKLIF TRAV8-1*01 TRAJ34*01 CAWGVQLAGVDEQYF TRBV30*01 TRBJ2-7*01 HLA-A*02:01 B2M MHCI YVLDHLIVV BRLF1 EBV PMID:34811538 tetramer-sort yes amplicon-seq effector memory T cells T1D T1D_2 chip0420_391772 PBMC +863 CSVGTGGTNEKLFF TRBV29-1*01 TRBJ1-4*01 HLA-A*02:01 B2M MHCI GLCTLVAML BLMF1 EBV PMID:34811538 tetramer-sort yes amplicon-seq effector memory T cells T1D T1D_1 chip0420_240881 PBMC +864 CAVKDTGKLIF TRAV8-1*01 TRAJ37*01 HLA-A*02:01 B2M MHCI YVLDHLIVV BRLF1 EBV PMID:34811538 tetramer-sort yes amplicon-seq effector memory T cells T1D T1D_2 chip0420_716975 PBMC +865 CASRAGAGDTQYF TRBV10-2*01 TRBJ2-3*01 HLA-A*02:01 B2M MHCI GLCTLVAML BLMF1 EBV PMID:34811538 tetramer-sort yes amplicon-seq effector memory T cells T1D T1D_2 chip0420_154271 PBMC +866 CASSVDNGAEAFF TRBV9*01 TRBJ1-1*01 HLA-A*02:01 B2M MHCI LLAGIGTVPI PGT HomoSapiens PMID:34811538 tetramer-sort yes amplicon-seq Naive T cells T1D T1D_2 chip0420_643289 PBMC +867 CVAALSNFGNEKLTF TRAV12-1*01 TRAJ48*01 CASRRRRgg??ccLNTEAFF TRBV3-1*01 TRBJ1-1*01 HLA-A*02:01 B2M MHCI LLAGIGTVPI PGT HomoSapiens PMID:34811538 tetramer-sort yes amplicon-seq Naive T cells T1D T1D_2 chip0420_831093 PBMC +868 CAESTSGGSLIF TRAV5*01 TRAJ23*01 CSVGTGGTNEKLFF TRBV29-1*01 TRBJ1-4*01 HLA-A*02:01 B2M MHCI GLCTLVAML BLMF1 EBV PMID:34811538 tetramer-sort yes amplicon-seq effector memory T cells T1D T1D_2 chip0420_678668 PBMC +869 LCR*SRac??tgNYEQYF TRBV19*01 TRBJ2-7*01 HLA-A*02:01 B2M MHCI LLNATDIAV GP160 HIV-1 PMID:34811538 tetramer-sort yes amplicon-seq effector memory T cells tet_neg chip0420_322557 PBMC +870 CAYRSPPSSEKLVF TRAV38-2/DV8*01 TRAJ57*01 CASSDGRVHPGTQYF TRBV2*01 TRBJ2-5*01 HLA-A*02:01 B2M MHCI GLCTLVAML BLMF1 EBV PMID:34811538 tetramer-sort yes amplicon-seq effector memory T cells T1D T1D_1 chip0420_419807 PBMC +871 CAVVSNSGYALNF TRAV21*01 TRAJ41*01 HLA-A*02:01 B2M MHCI GLCTLVAML BLMF1 EBV PMID:34811538 tetramer-sort yes amplicon-seq effector memory T cells T1D T1D_1 chip0420_243364 PBMC +872 CSVGTGGTNEKLFF TRBV29-1*01 TRBJ1-4*01 HLA-A*02:01 B2M MHCI GLCTLVAML BLMF1 EBV PMID:34811538 tetramer-sort yes amplicon-seq effector memory T cells T1D T1D_2 chip0420_647765 PBMC +873 CSVGTGGTNEKLFF TRBV29-1*01 TRBJ1-4*01 HLA-A*02:01 B2M MHCI GLCTLVAML BLMF1 EBV PMID:34811538 tetramer-sort yes amplicon-seq effector T cells T1D T1D_2 chip0420_867138 PBMC +875 CGTPENDSWGQLQF TRAV30*01 TRAJ24*01 HLA-A*02:01 B2M MHCI GILGFVFTL M1 InfluenzaA PMID:34811538 tetramer-sort yes amplicon-seq transitional T cells between effector and memory populations T1D T1D_1 chip0420_37686 PBMC +876 CASSRRTLNSGANVLTF TRBV13*01 TRBJ2-6*01 HLA-A*02:01 B2M MHCI YVLDHLIVV BRLF1 EBV PMID:34811538 tetramer-sort yes amplicon-seq effector T cells T1D T1D_2 chip0420_680812 PBMC +877 CASSSGGNVDTQYF TRBV7-3*01 TRBJ2-3*01 HLA-A*02:01 B2M MHCI GLCTLVAML BLMF1 EBV PMID:34811538 tetramer-sort yes amplicon-seq effector memory T cells T1D T1D_1 chip0420_471477 PBMC +878 CSVGSRGTNEKLFF TRBV29-1*01 TRBJ1-4*01 HLA-A*02:01 B2M MHCI GLCTLVAML BLMF1 EBV PMID:34811538 tetramer-sort yes amplicon-seq effector memory T cells T1D T1D_1 chip0420_103970 PBMC +879 CASSLGDEQFF TRBV11-3*01 TRBJ2-1*01 HLA-A*02:01 B2M MHCI LLAGIGTVPI PGT HomoSapiens PMID:34811538 tetramer-sort yes amplicon-seq Naive T cells T1D T1D_1 chip0420_37086 PBMC +881 CASSVGGEAYEQYF TRBV9*01 TRBJ2-7*01 HLA-A*02:01 B2M MHCI GLCTLVAML BLMF1 EBV PMID:34811538 tetramer-sort yes amplicon-seq effector memory T cells T1D T1D_2 chip0420_816429 PBMC +882 CASSPGTGGHEQYF TRBV7-9*01 TRBJ2-7*01 HLA-A*02:01 B2M MHCI GLCTLVAML BLMF1 EBV PMID:34811538 tetramer-sort yes amplicon-seq transitional T cells between effector and memory populations T1D T1D_2 chip0420_545667 PBMC +883 CASSPGDARGEQYF TRBV5-6*01 TRBJ2-7*01 HLA-A*02:01 B2M MHCI YLLEMLWRL LMP1 EBV PMID:34811538 tetramer-sort yes amplicon-seq central memory T cells T1D T1D_1 chip0420_438022 PBMC +884 CAGATSNYQLIW TRAV27*01 TRAJ33*01 CASSLNRDTYEQYF TRBV12-3*01,TRBV12-4*01 TRBJ2-7*01 HLA-A*02:01 B2M MHCI VAANIVLTV ZNT8 HomoSapiens PMID:34811538 tetramer-sort yes amplicon-seq Naive T cells T1D T1D_1 chip0420_869973 PBMC +886 CAVNSGYALTF TRAV3*01 TRAJ41*01 CSAINTSGTGGYEQYF TRBV20-1*01 TRBJ2-7*01 HLA-A*02:01 B2M MHCI LLFNILGGWV NS4B HCV PMID:34811538 tetramer-sort yes amplicon-seq effector memory T cells T1D T1D_1 chip0420_55233 PBMC +887 CSVGTGGTNEKLFF TRBV29-1*01 TRBJ1-4*01 HLA-A*02:01 B2M MHCI GLCTLVAML BLMF1 EBV PMID:34811538 tetramer-sort yes amplicon-seq effector memory T cells T1D T1D_2 chip0420_517318 PBMC +888 CALGGLTF TRAV8-1*01 TRAJ22*01 CASSPSTSGSGETQYF TRBV3-1*01 TRBJ2-5*01 HLA-A*02:01 B2M MHCI YVLDHLIVV BRLF1 EBV PMID:34811538 tetramer-sort yes amplicon-seq effector memory T cells T1D T1D_2 chip0420_717849 PBMC +890 CGAPLVHSMRF TRAV34*01 TRAJ43*01 HLA-A*02:01 B2M MHCI YVLDHLIVV BRLF1 EBV PMID:34811538 tetramer-sort yes amplicon-seq effector memory T cells T1D T1D_2 chip0420_438173 PBMC +891 CASSALLGGAYGYTF TRBV27*01 TRBJ1-2*01 HLA-A*02:01 B2M MHCI YVLDHLIVV BRLF1 EBV PMID:34811538 tetramer-sort yes amplicon-seq effector memory T cells T1D T1D_2 chip0420_249519 PBMC +892 CSVGTGGTNEKLFF TRBV29-1*01 TRBJ1-4*01 HLA-A*02:01 B2M MHCI GLCTLVAML BLMF1 EBV PMID:34811538 tetramer-sort yes amplicon-seq effector memory T cells T1D T1D_2 chip0420_71794 PBMC +894 CSVGPRGTNEKLFF TRBV29-1*01 TRBJ1-4*01 HLA-A*02:01 B2M MHCI GLCTLVAML BLMF1 EBV PMID:34811538 tetramer-sort yes amplicon-seq effector memory T cells T1D T1D_1 chip0420_482823 PBMC +895 CAVRDDRDDKIIF TRAV3*01 TRAJ30*01 CASSLNAGEWYGYTF TRBV11-2*01 TRBJ1-2*01 HLA-A*02:01 B2M MHCI GLCTLVAML BLMF1 EBV PMID:34811538 tetramer-sort yes amplicon-seq effector memory T cells T1D T1D_2 chip0420_758251 PBMC +896 CSVGSRGTNEKLFF TRBV29-1*01 TRBJ1-4*01 HLA-A*02:01 B2M MHCI GLCTLVAML BLMF1 EBV PMID:34811538 tetramer-sort yes amplicon-seq effector memory T cells T1D T1D_1 chip0420_429572 PBMC +898 CASSVRAGETQYF TRBV19*01 TRBJ2-5*01 HLA-A*02:01 B2M MHCI GILGFVFTL M1 InfluenzaA PMID:34811538 tetramer-sort yes amplicon-seq transitional T cells between effector and memory populations T1D T1D_1 chip0420_601312 PBMC +899 CAVSDTG??cRTSKYIF TRAV8-6*01 TRAJ40*01 CASSPDQTSSYNEQFF TRBV27*01 TRBJ2-1*01 HLA-A*02:01 B2M MHCI YVLDHLIVV BRLF1 EBV PMID:34811538 tetramer-sort yes amplicon-seq effector memory T cells T1D T1D_1 chip0420_806046 PBMC +900 CASSQSPGGLAFF TRBV14*01 TRBJ1-1*01 HLA-A*02:01 B2M MHCI GLCTLVAML BLMF1 EBV PMID:34811538 tetramer-sort yes amplicon-seq effector memory T cells T1D T1D_2 chip0420_859344 PBMC +901 CASSQEQGAWTEAFF TRAV9-1*01 TRAJ40*01 CASSQEQGAWTEAFF TRBV3-1*01 TRBJ1-1*01 HLA-A*02:01 B2M MHCI LLAGIGTVPI PGT HomoSapiens PMID:34811538 tetramer-sort yes amplicon-seq Naive T cells T1D T1D_1 chip0420_363597 PBMC +902 CASSSGLVAPGELFF TRBV2*01 TRBJ2-2*01 HLA-A*02:01 B2M MHCI GLCTLVAML BLMF1 EBV PMID:34811538 tetramer-sort yes amplicon-seq effector memory T cells T1D T1D_2 chip0420_765275 PBMC +906 CASNLAGNNEQFF TRBV9*01 TRBJ2-1*01 HLA-A*02:01 B2M MHCI GLCTLVAML BLMF1 EBV PMID:34811538 tetramer-sort yes amplicon-seq effector memory T cells T1D T1D_2 chip0420_853577 PBMC +907 CASSPTGEVADTQYF TRBV11-2*01 TRBJ2-3*01 HLA-A*02:01 B2M MHCI LLAGIGTVPI PGT HomoSapiens PMID:34811538 tetramer-sort yes amplicon-seq Naive T cells T1D T1D_1 chip0420_582966 PBMC +908 CSVGTGGTNEKLFF TRBV29-1*01 TRBJ1-4*01 HLA-A*02:01 B2M MHCI GLCTLVAML BLMF1 EBV PMID:34811538 tetramer-sort yes amplicon-seq effector T cells T1D T1D_2 chip0420_563889 PBMC +909 CAISEGTLSSYNEQFF TRBV10-3*01 TRBJ2-1*01 HLA-A*02:01 B2M MHCI YVLDHLIVV BRLF1 EBV PMID:34811538 tetramer-sort yes amplicon-seq effector memory T cells T1D T1D_1 chip0420_191753 PBMC +910 CAMREIDNDYKLSF TRAV14/DV4*01 TRAJ20*01 HLA-A*02:01 B2M MHCI RGPGRAFVTI GP160 HIV-1 PMID:34811538 tetramer-sort yes amplicon-seq Naive T cells T1D T1D_1 chip0420_161704 PBMC +911 CSVGTGGTNEKLFF TRBV29-1*01 TRBJ1-4*01 HLA-A*02:01 B2M MHCI GLCTLVAML BLMF1 EBV PMID:34811538 tetramer-sort yes amplicon-seq effector memory T cells T1D T1D_2 chip0420_610257 PBMC +913 CVVNGRDSSYKLIF TRAV12-1*01 TRAJ12*01 CASSSGLVAPGELFF TRBV2*01 TRBJ2-2*01 HLA-A*02:01 B2M MHCI GLCTLVAML BLMF1 EBV PMID:34811538 tetramer-sort yes amplicon-seq effector memory T cells T1D T1D_2 chip0420_127667 PBMC +915 CASSPHLGAAAEQYF TRBV19*01 TRBJ2-7*01 HLA-A*02:01 B2M MHCI YVLDHLIVV BRLF1 EBV PMID:34811538 tetramer-sort yes amplicon-seq effector T cells T1D T1D_1 chip0420_715120 PBMC +918 CAMREDNAGNMLTF TRAV14/DV4*01 TRAJ39*01 HLA-A*02:01 B2M MHCI GILGFVFTL M1 InfluenzaA PMID:34811538 tetramer-sort yes amplicon-seq transitional T cells between effector and memory populations T1D T1D_1 chip0420_11973 PBMC +919 CALGGLTF TRAV8-1*01 TRAJ22*01 CASSPSTSGSGETQYF TRBV3-1*01 TRBJ2-5*01 HLA-A*02:01 B2M MHCI YVLDHLIVV BRLF1 EBV PMID:34811538 tetramer-sort yes amplicon-seq effector T cells T1D T1D_2 chip0420_37701 PBMC +920 CASSPALRWETQYF TRBV12-3*01,TRBV12-4*01 TRBJ2-5*01 HLA-A*02:01 B2M MHCI VAANIVLTV ZNT8 HomoSapiens PMID:34811538 tetramer-sort yes amplicon-seq central memory T cells T1D T1D_2 chip0420_647889 PBMC +921 CAVKDTDKLIF TRAV8-1*01 TRAJ34*01 CASSLQAANYGYTF TRBV3-1*01 TRBJ1-2*01 HLA-A*02:01 B2M MHCI YVLDHLIVV BRLF1 EBV PMID:34811538 tetramer-sort yes amplicon-seq effector T cells T1D T1D_2 chip0420_542306 PBMC +923 CAEDPAGGGNKLTF TRAV13-2*01 TRAJ10*01 HLA-A*02:01 B2M MHCI AIIRILQQL VPR HIV-1 PMID:34811538 tetramer-sort yes amplicon-seq Naive T cells T1D T1D_1 chip0420_519435 PBMC +925 CSVGSRGTNEKLFF TRBV29-1*01 TRBJ1-4*01 HLA-A*02:01 B2M MHCI GLCTLVAML BLMF1 EBV PMID:34811538 tetramer-sort yes amplicon-seq effector memory T cells T1D T1D_1 chip0420_359921 PBMC +929 CASSLNRVNTEAFF TRBV5-6*01 TRBJ1-1*01 HLA-A*02:01 B2M MHCI LLAGIGTVPI PGT HomoSapiens PMID:34811538 tetramer-sort yes amplicon-seq Naive T cells T1D T1D_2 chip0420_561765 PBMC +930 CAWGDQLGAARELCF TRBV30*01 TRBJ2-2*01 HLA-A*02:01 B2M MHCI YVLDHLIVV BRLF1 EBV PMID:34811538 tetramer-sort yes amplicon-seq transitional T cells between effector and memory populations T1D T1D_2 chip0420_116163 PBMC +931 CARSVPGGNYGYTF TRBV6-1*01 TRBJ1-2*01 HLA-A*02:01 B2M MHCI FLYALALLL LMP2 EBV PMID:34811538 tetramer-sort yes amplicon-seq central memory T cells T1D T1D_1 chip0420_219428 PBMC +932 CASRAGAGDTQYF TRBV10-2*01 TRBJ2-3*01 HLA-A*02:01 B2M MHCI GLCTLVAML BLMF1 EBV PMID:34811538 tetramer-sort yes amplicon-seq effector memory T cells T1D T1D_2 chip0420_219400 PBMC +933 CASCPHLGAAAEQYF TRBV19*01 TRBJ2-7*01 HLA-A*02:01 B2M MHCI YVLDHLIVV BRLF1 EBV PMID:34811538 tetramer-sort yes amplicon-seq effector T cells T1D T1D_1 chip0420_352055 PBMC +934 CVVNGRDSSYKLIF TRAV12-1*01 TRAJ12*01 CASSSGLVAPGELFF TRBV2*01 TRBJ2-2*01 HLA-A*02:01 B2M MHCI GLCTLVAML BLMF1 EBV PMID:34811538 tetramer-sort yes amplicon-seq effector memory T cells T1D T1D_2 chip0420_113802 PBMC +935 CSVGTGGTNEKLFF TRBV29-1*01 TRBJ1-4*01 HLA-A*02:01 B2M MHCI GLCTLVAML BLMF1 EBV PMID:34811538 tetramer-sort yes amplicon-seq effector memory T cells T1D T1D_2 chip0420_557519 PBMC +936 CASRAGAGDTQYF TRBV10-2*01 TRBJ2-3*01 HLA-A*02:01 B2M MHCI GLCTLVAML BLMF1 EBV PMID:34811538 tetramer-sort yes amplicon-seq effector memory T cells T1D T1D_2 chip0420_221561 PBMC +937 CSVGGSFYGYTF TRBV29-1*01 TRBJ1-2*01 HLA-A*02:01 B2M MHCI GLCTLVAML BLMF1 EBV PMID:34811538 tetramer-sort yes amplicon-seq effector T cells T1D T1D_2 chip0420_193849 PBMC +938 CAMKDTDKLIF TRAV8-1*01 TRAJ34*01 CASSHLLGTGFGYTF TRBV3-1*01 TRBJ1-2*01 HLA-A*02:01 B2M MHCI YVLDHLIVV BRLF1 EBV PMID:34811538 tetramer-sort yes amplicon-seq effector T cells T1D T1D_1 chip0420_389494 PBMC +940 CSVGTGGTNEKLFF TRBV29-1*01 TRBJ1-4*01 HLA-A*02:01 B2M MHCI GLCTLVAML BLMF1 EBV PMID:34811538 tetramer-sort yes amplicon-seq effector memory T cells T1D T1D_2 chip0420_690412 PBMC +941 CASSIIGGRRDGYTF TRBV19*01 TRBJ1-2*01 HLA-A*02:01 B2M MHCI GILGFVFTL M1 InfluenzaA PMID:34811538 tetramer-sort yes amplicon-seq transitional T cells between effector and memory populations T1D T1D_1 chip0420_233743 PBMC +942 CVVNGRDSSYKLIF TRAV12-1*01 TRAJ12*01 CASSSGLVAPGELFF TRBV2*01 TRBJ2-2*01 HLA-A*02:01 B2M MHCI GLCTLVAML BLMF1 EBV PMID:34811538 tetramer-sort yes amplicon-seq effector memory T cells T1D T1D_2 chip0420_419245 PBMC +943 CSVGTGGTNEKLFF TRBV29-1*01 TRBJ1-4*01 HLA-A*02:01 B2M MHCI GLCTLVAML BLMF1 EBV PMID:34811538 tetramer-sort yes amplicon-seq effector memory T cells T1D T1D_2 chip0420_726458 PBMC +944 CASSFSDNEQFF TRBV7-9*01 TRBJ2-1*01 HLA-A*02:01 B2M MHCI LLAGIGTVPI PGT HomoSapiens PMID:34811538 tetramer-sort yes amplicon-seq Naive T cells T1D T1D_1 chip0420_503129 PBMC +946 CAVTTDSWGKLQF TRAV12-2*01 TRAJ24*01 CASRPQTGTTYEQYF TRBV2*01 TRBJ2-7*01 HLA-A*02:01 B2M MHCI LLAGIGTVPI PGT HomoSapiens PMID:34811538 tetramer-sort yes amplicon-seq Naive T cells T1D T1D_1 chip0420_866005 PBMC +947 CAAYAGNMLTF TRAV29/DV5*01 TRAJ39*01 CASRMGAGDTQYF TRBV10-2*01 TRBJ2-3*01 HLA-A*02:01 B2M MHCI GLCTLVAML BLMF1 EBV PMID:34811538 tetramer-sort yes amplicon-seq effector memory T cells T1D T1D_2 chip0420_620331 PBMC +948 CSVDQRTGQKKNYGYTF TRBV29-1*01 TRBJ1-2*01 HLA-A*02:01 B2M MHCI GLCTLVAML BLMF1 EBV PMID:34811538 tetramer-sort yes amplicon-seq effector memory T cells T1D T1D_2 chip0420_214988 PBMC +949 CASLTPGASKIIF TRAV8-6*01 TRAJ3*01 CASSSGLVAPGELFF TRBV2*01 TRBJ2-2*01 HLA-A*02:01 B2M MHCI GLCTLVAML BLMF1 EBV PMID:34811538 tetramer-sort yes amplicon-seq effector memory T cells T1D T1D_2 chip0420_565788 PBMC +950 CASSLRSAYEQYF TRBV19*01 TRBJ2-7*01 HLA-A*02:01 B2M MHCI GILGFVFTL M1 InfluenzaA PMID:34811538 tetramer-sort yes amplicon-seq transitional T cells between effector and memory populations T1D T1D_1 chip0420_430917 PBMC +951 CASSPVSGSTYEQYF TRBV3-1*01 TRBJ2-7*01 HLA-A*02:01 B2M MHCI GLCTLVAML BLMF1 EBV PMID:34811538 tetramer-sort yes amplicon-seq effector memory T cells T1D T1D_1 chip0420_178410 PBMC +952 CASSPVSGSTYEQYF TRBV3-1*01 TRBJ2-7*01 HLA-A*02:01 B2M MHCI GLCTLVAML BLMF1 EBV PMID:34811538 tetramer-sort yes amplicon-seq effector memory T cells T1D T1D_1 chip0420_187309 PBMC +953 RALNTDKLIF TRAV8-1*01 TRAJ34*01 CASGTLAGAGQTQYF TRBV3-1*01 TRBJ2-5*01 HLA-A*02:01 B2M MHCI YVLDHLIVV BRLF1 EBV PMID:34811538 tetramer-sort yes amplicon-seq effector T cells T1D T1D_2 chip0420_852310 PBMC +955 CAVKVDGQKLLF TRAV8-1*01 TRAJ16*01 CAWSDQLGAARELFF TRBV30*01 TRBJ2-2*01 HLA-A*02:01 B2M MHCI YVLDHLIVV BRLF1 EBV PMID:34811538 tetramer-sort yes amplicon-seq effector memory T cells T1D T1D_2 chip0420_258451 PBMC +956 SAVRARDGGFNTLF TRAV8-4*01 TRAJ9*01 CASSINGGRRDGYTF TRBV19*01 TRBJ1-2*01 HLA-A*02:01 B2M MHCI GILGFVFTL M1 InfluenzaA PMID:34811538 tetramer-sort yes amplicon-seq transitional T cells between effector and memory populations T1D T1D_1 chip0420_688648 PBMC +958 CASRAGAGDTQYF TRBV10-2*01 TRBJ2-3*01 HLA-A*02:01 B2M MHCI GLCTLVAML BLMF1 EBV PMID:34811538 tetramer-sort yes amplicon-seq effector memory T cells T1D T1D_2 chip0420_213376 PBMC +959 CASSVVGNEQFF TRBV9*01 TRBJ2-1*01 HLA-A*02:01 B2M MHCI GLCTLVAML BLMF1 EBV PMID:34811538 tetramer-sort yes amplicon-seq effector T cells T1D T1D_1 chip0420_372989 PBMC +960 CGTEEPNDYKLSF TRAV30*01 TRAJ20*01 CASSTGQLSNTGELFF TRBV9*01 TRBJ2-2*01 HLA-A*02:01 B2M MHCI GLCTLVAML BLMF1 EBV PMID:34811538 tetramer-sort yes amplicon-seq effector T cells T1D T1D_1 chip0420_99994 PBMC +962 CAVRLGYGGATNKLLF TRAV41*01 TRAJ32*01 HLA-A*02:01 B2M MHCI GLCTLVAML BLMF1 EBV PMID:34811538 tetramer-sort yes amplicon-seq effector memory T cells T1D T1D_1 chip0420_576500 PBMC +963 CAAYAGNVLTF TRAV29/DV5*01 TRAJ39*01 HLA-A*02:01 B2M MHCI GLCTLVAML BLMF1 EBV PMID:34811538 tetramer-sort yes amplicon-seq transitional T cells between effector and memory populations T1D T1D_2 chip0420_255768 PBMC +964 CSVGSRGTNEKLFF TRBV29-1*01 TRBJ1-4*01 HLA-A*02:01 B2M MHCI GLCTLVAML BLMF1 EBV PMID:34811538 tetramer-sort yes amplicon-seq effector memory T cells T1D T1D_1 chip0420_72645 PBMC +966 CASSYGTSGRRETQYF TRBV5-4*01 TRBJ2-5*01 HLA-A*02:01 B2M MHCI YVLDHLIVV BRLF1 EBV PMID:34811538 tetramer-sort yes amplicon-seq effector memory T cells T1D T1D_2 chip0420_179618 PBMC +967 CAVSLtg??gtQNFVF TRAV13-1*01 TRAJ26*01 HLA-A*02:01 B2M MHCI GILGFVFTL M1 InfluenzaA PMID:34811538 tetramer-sort yes amplicon-seq transitional T cells between effector and memory populations T1D T1D_1 chip0420_565470 PBMC +968 CAGASGSSNTGKLIF TRAV27*01 TRAJ37*01 HLA-A*02:01 B2M MHCI GILGFVFTL M1 InfluenzaA PMID:34811538 tetramer-sort yes amplicon-seq effector T cells T1D T1D_1 chip0420_838037 PBMC +969 CASRMGAGDTQYF TRBV10-2*01 TRBJ2-3*01 HLA-A*02:01 B2M MHCI GLCTLVAML BLMF1 EBV PMID:34811538 tetramer-sort yes amplicon-seq effector memory T cells T1D T1D_2 chip0420_315818 PBMC +971 CALGGLTF TRAV8-1*01 TRAJ22*01 CASSPSTSGSGETQYF TRBV3-1*01 TRBJ2-5*01 HLA-A*02:01 B2M MHCI YVLDHLIVV BRLF1 EBV PMID:34811538 tetramer-sort yes amplicon-seq effector memory T cells T1D T1D_2 chip0420_350898 PBMC +972 CSVGTGGTNEKLFF TRBV29-1*01 TRBJ1-4*01 HLA-A*02:01 B2M MHCI GLCTLVAML BLMF1 EBV PMID:34811538 tetramer-sort yes amplicon-seq effector memory T cells T1D T1D_2 chip0420_350593 PBMC +973 CVVNGRDSSYKLIF TRAV12-1*01 TRAJ12*01 CASSSGLVAPGELFF TRBV2*01 TRBJ2-2*01 HLA-A*02:01 B2M MHCI GLCTLVAML BLMF1 EBV PMID:34811538 tetramer-sort yes amplicon-seq effector T cells T1D T1D_2 chip0420_330521 PBMC +974 CAESTSGGKLIF TRAV5*01 TRAJ23*01 CSVGTGGTNEKLFF TRBV29-1*01 TRBJ1-4*01 HLA-A*02:01 B2M MHCI GLCTLVAML BLMF1 EBV PMID:34811538 tetramer-sort yes amplicon-seq effector T cells T1D T1D_2 chip0420_215697 PBMC +975 CASSALLGGAYGYTF TRBV27*01 TRBJ1-2*01 HLA-A*02:01 B2M MHCI YVLDHLIVV BRLF1 EBV PMID:34811538 tetramer-sort yes amplicon-seq effector memory T cells T1D T1D_2 chip0420_833183 PBMC +976 CAVHDYKLSF TRAV12-2*01 TRAJ20*01 CSVVSPNTEAFF TRBV29-1*01 TRBJ1-1*01 HLA-A*02:01 B2M MHCI LLAGIGTVPI PGT HomoSapiens PMID:34811538 tetramer-sort yes amplicon-seq transitional T cells between effector and memory populations T1D T1D_2 chip0420_39792 PBMC +977 CASSFGAGELFF TRBV19*01 TRBJ2-2*01 HLA-A*02:01 B2M MHCI GILGFVFTL M1 InfluenzaA PMID:34811538 tetramer-sort yes amplicon-seq transitional T cells between effector and memory populations T1D T1D_1 chip0420_684254 PBMC +978 CAEDNNARLVF TRAV5*01 TRAJ31*01 CSVDQRTGQKKNYGYTF TRBV29-1*01 TRBJ1-2*01 HLA-A*02:01 B2M MHCI GLCTLVAML BLMF1 EBV PMID:34811538 tetramer-sort yes amplicon-seq effector memory T cells T1D T1D_2 chip0420_296113 PBMC +979 CALYNTDKLIF TRAV9-2*01 TRAJ34*01 CASSPVSGSTYEQYF TRBV3-1*01 TRBJ2-7*01 HLA-A*02:01 B2M MHCI GLCTLVAML BLMF1 EBV PMID:34811538 tetramer-sort yes amplicon-seq effector memory T cells T1D T1D_1 chip0420_616289 PBMC +981 CSVGSRGTNEKLFF TRBV29-1*01 TRBJ1-4*01 HLA-A*02:01 B2M MHCI GLCTLVAML BLMF1 EBV PMID:34811538 tetramer-sort yes amplicon-seq effector memory T cells T1D T1D_1 chip0420_217617 PBMC +983 YAENAWgg??ctYQNRTF TRAV5*01 TRAJ13*01 CSVGTGGTNEKLFF TRBV29-1*01 TRBJ1-4*01 HLA-A*02:01 B2M MHCI GLCTLVAML BLMF1 EBV PMID:34811538 tetramer-sort yes amplicon-seq transitional T cells between effector and memory populations T1D T1D_2 chip0420_878662 PBMC +984 CASSTGQPQHF TRBV19*01 TRBJ1-5*01 HLA-A*02:01 B2M MHCI GILGFVFTL M1 InfluenzaA PMID:34811538 tetramer-sort yes amplicon-seq transitional T cells between effector and memory populations T1D T1D_1 chip0420_628574 PBMC +985 CSARDGTGNGYTF TRBV20-1*01 TRBJ1-2*01 HLA-A*02:01 B2M MHCI GLCTLVAML BLMF1 EBV PMID:34811538 tetramer-sort yes amplicon-seq effector memory T cells T1D T1D_1 chip0420_625039 PBMC +986 CASSQSPGGTQHF TRBV14*01 TRBJ2-3*01 HLA-A*02:01 B2M MHCI GLCTLVAML BLMF1 EBV PMID:34811538 tetramer-sort yes amplicon-seq effector T cells T1D T1D_1 chip0420_727670 PBMC +987 CASSRRTLNSGANVLTF TRBV13*01 TRBJ2-6*01 HLA-A*02:01 B2M MHCI YVLDHLIVV BRLF1 EBV PMID:34811538 tetramer-sort yes amplicon-seq effector memory T cells T1D T1D_2 chip0420_356796 PBMC +988 CSVGGSFYGYTF TRBV29-1*01 TRBJ1-2*01 HLA-A*02:01 B2M MHCI GLCTLVAML BLMF1 EBV PMID:34811538 tetramer-sort yes amplicon-seq effector memory T cells T1D T1D_2 chip0420_812025 PBMC +989 CALGEDSSYKLIF TRAV1-2*01 TRAJ12*01 CASSARQGGHETQYF TRBV7-9*01 TRBJ2-5*01 HLA-A*02:01 B2M MHCI RQFGPDWIVA ADH HomoSapiens PMID:34811538 tetramer-sort yes amplicon-seq central memory T cells T1D T1D_2 chip0420_200363 PBMC +991 CAALMHSNYQLIW TRAV21*01 TRAJ33*01 CARSEDGMNTEAFF TRBV10-2*01 TRBJ1-1*01 HLA-A*02:01 B2M MHCI CLGGLLTMV LMP2A EBV PMID:34811538 tetramer-sort yes amplicon-seq central memory T cells T1D T1D_2 chip0420_239616 PBMC +992 CVVNIGKGYYGGSQGNLIF TRAV12-1*01 TRAJ42*01 HLA-A*02:01 B2M MHCI SLYQLENYC PREINS HomoSapiens PMID:34811538 tetramer-sort yes amplicon-seq Naive T cells T1D T1D_2 chip0420_653544 PBMC +993 CSVGSRGTNEKLFF TRBV29-1*01 TRBJ1-4*01 HLA-A*02:01 B2M MHCI GLCTLVAML BLMF1 EBV PMID:34811538 tetramer-sort yes amplicon-seq effector memory T cells T1D T1D_1 chip0420_139020 PBMC +994 CAVVPSGTYKYIF TRAV8-3*01 TRAJ40*01 HLA-A*02:01 B2M MHCI GLCTLVAML BLMF1 EBV PMID:34811538 tetramer-sort yes amplicon-seq effector memory T cells tet_neg chip0420_352299 PBMC +995 CASGTLAGAGQTQYF TRBV3-1*01 TRBJ2-5*01 HLA-A*02:01 B2M MHCI YVLDHLIVV BRLF1 EBV PMID:34811538 tetramer-sort yes amplicon-seq effector T cells T1D T1D_2 chip0420_41857 PBMC +996 CAPLSWTAGNKLTF TRAV19*01 TRAJ17*01 HLA-A*02:01 B2M MHCI HLVEALYLV PREINS HomoSapiens PMID:34811538 tetramer-sort yes amplicon-seq central memory T cells T1D T1D_2 chip0420_526594 PBMC +997 CSVDQRTGQKKNYGYTF TRBV29-1*01 TRBJ1-2*01 HLA-A*02:01 B2M MHCI GLCTLVAML BLMF1 EBV PMID:34811538 tetramer-sort yes amplicon-seq effector memory T cells T1D T1D_2 chip0420_836122 PBMC +998 CSVGSRGTNEKLFF TRBV29-1*01 TRBJ1-4*01 HLA-A*02:01 B2M MHCI GLCTLVAML BLMF1 EBV PMID:34811538 tetramer-sort yes amplicon-seq effector memory T cells T1D T1D_1 chip0420_197572 PBMC +999 CASSIRSTDTQYF TRBV19*01 TRBJ2-3*01 HLA-A*02:01 B2M MHCI GILGFVFTL M1 InfluenzaA PMID:34811538 tetramer-sort yes amplicon-seq transitional T cells between effector and memory populations T1D T1D_1 chip0420_108866 PBMC +1000 CAVGGRAGGFKTIF TRAV8-4*01 TRAJ9*01 CARRINGGRRDGYTF TRBV19*01 TRBJ1-2*01 HLA-A*02:01 B2M MHCI GILGFVFTL M1 InfluenzaA PMID:34811538 tetramer-sort yes amplicon-seq transitional T cells between effector and memory populations T1D T1D_1 chip0420_254863 PBMC +1001 CAESTSGGKLIF TRAV5*01 TRAJ23*01 CSVGTGGTNEKLFF TRBV29-1*01 TRBJ1-4*01 HLA-A*02:01 B2M MHCI GLCTLVAML BLMF1 EBV PMID:34811538 tetramer-sort yes amplicon-seq effector T cells T1D T1D_2 chip0420_34692 PBMC +1003 CASSHGQRFPGANVLTF TRBV3-1*01 TRBJ2-6*01 HLA-A*02:01 B2M MHCI VIYQYMDDL POL HIV-1 PMID:34811538 tetramer-sort yes amplicon-seq Naive T cells T1D T1D_1 chip0420_498053 PBMC +1004 CATQQGRDSQPQHF TRBV28*01 TRBJ1-5*01 HLA-A*02:01 B2M MHCI GLCTLVAML BLMF1 EBV PMID:34811538 tetramer-sort yes amplicon-seq effector T cells T1D T1D_1 chip0420_409127 PBMC +1006 CAANYGGSQGNLLF TRAV25*01 TRAJ42*01 WASRAARVHPATQYF TRBV2*01 TRBJ2-5*01 HLA-A*02:01 B2M MHCI GLCTLVAML BLMF1 EBV PMID:34811538 tetramer-sort yes amplicon-seq effector T cells T1D T1D_1 chip0420_548258 PBMC +1007 CASSHQASEQYF TRBV10-1*01 TRBJ2-7*01 HLA-A*02:01 B2M MHCI YVLDHLIVV BRLF1 EBV PMID:34811538 tetramer-sort yes amplicon-seq effector memory T cells T1D T1D_2 chip0420_818930 PBMC +1008 CATQQGRDSQPQHF TRBV28*01 TRBJ1-5*01 HLA-A*02:01 B2M MHCI GLCTLVAML BLMF1 EBV PMID:34811538 tetramer-sort yes amplicon-seq effector memory T cells T1D T1D_1 chip0420_667247 PBMC +1009 CVVNGRDSSYKLIF TRAV12-1*01 TRAJ12*01 CASSAGQVAPGEQYF TRBV2*01 TRBJ2-7*01 HLA-A*02:01 B2M MHCI GLCTLVAML BLMF1 EBV PMID:34811538 tetramer-sort yes amplicon-seq effector T cells T1D T1D_2 chip0420_334204 PBMC +1011 CASSSGTDTYEQYF TRBV27*01 TRBJ2-7*01 HLA-A*02:01 B2M MHCI LLAGIGTVPI PGT HomoSapiens PMID:34811538 tetramer-sort yes amplicon-seq Naive T cells T1D T1D_2 chip0420_790843 PBMC +1012 CARRALLGRAYGYTS TRBV27*01 TRBJ1-2*01 HLA-A*02:01 B2M MHCI YVLDHLIVV BRLF1 EBV PMID:34811538 tetramer-sort yes amplicon-seq effector memory T cells T1D T1D_2 chip0420_625701 PBMC +1013 CAVSDRDGGFETIF TRAV8-4*01 TRAJ9*01 HLA-A*02:01 B2M MHCI GILGFVFTL M1 InfluenzaA PMID:34811538 tetramer-sort yes amplicon-seq transitional T cells between effector and memory populations T1D T1D_1 chip0420_455410 PBMC +1014 CAMSISNFGNEKLTF TRAV12-3*01 TRAJ48*01 CATSDFRPGPRVSGELFF TRBV24-1*01 TRBJ2-2*01 HLA-A*02:01 B2M MHCI LLAGIGTVPI PGT HomoSapiens PMID:34811538 tetramer-sort yes amplicon-seq Naive T cells T1D T1D_1 chip0420_498652 PBMC +1016 CAVKDTDKLIF TRAV8-1*01 TRAJ34*01 CAWSVQLAGVDEQYF TRBV30*01 TRBJ2-7*01 HLA-A*02:01 B2M MHCI YVLDHLIVV BRLF1 EBV PMID:34811538 tetramer-sort yes amplicon-seq effector T cells T1D T1D_2 chip0420_47477 PBMC +1017 CSVGTGGTNEKLFF TRBV29-1*01 TRBJ1-4*01 HLA-A*02:01 B2M MHCI GLCTLVAML BLMF1 EBV PMID:34811538 tetramer-sort yes amplicon-seq effector memory T cells T1D T1D_2 chip0420_399428 PBMC +1019 CAASGGSQGNLIS TRAV29/DV5*01 TRAJ42*01 CSTQEGGYGYTF TRBV29-1*01 TRBJ1-2*01 HLA-A*02:01 B2M MHCI GLCTLVAML BLMF1 EBV PMID:34811538 tetramer-sort yes amplicon-seq effector memory T cells T1D T1D_1 chip0420_38935 PBMC +1020 CASSPVSGSTYEQYF TRBV3-1*01 TRBJ2-7*01 HLA-A*02:01 B2M MHCI GLCTLVAML BLMF1 EBV PMID:34811538 tetramer-sort yes amplicon-seq effector memory T cells T1D T1D_1 chip0420_449730 PBMC +1021 CSVGTGGTNEKLFF TRBV29-1*01 TRBJ1-4*01 HLA-A*02:01 B2M MHCI GLCTLVAML BLMF1 EBV PMID:34811538 tetramer-sort yes amplicon-seq effector memory T cells T1D T1D_2 chip0420_186022 PBMC +1022 CASSINGGRRDGYTF TRBV19*01 TRBJ1-2*01 HLA-A*02:01 B2M MHCI GILGFVFTL M1 InfluenzaA PMID:34811538 tetramer-sort yes amplicon-seq effector T cells T1D T1D_1 chip0420_235593 PBMC +1023 CSVGTGGTNEKLFF TRBV29-1*01 TRBJ1-4*01 HLA-A*02:01 B2M MHCI GLCTLVAML BLMF1 EBV PMID:34811538 tetramer-sort yes amplicon-seq effector memory T cells T1D T1D_2 chip0420_638825 PBMC +1025 CAVVSNSGYALNF TRAV21*01 TRAJ41*01 CASSSGGNVDTQYF TRBV7-3*01 TRBJ2-3*01 HLA-A*02:01 B2M MHCI GLCTLVAML BLMF1 EBV PMID:34811538 tetramer-sort yes amplicon-seq effector T cells T1D T1D_1 chip0420_271901 PBMC +1026 CSVEVGAGRAGELFF TRBV29-1*01 TRBJ2-2*01 HLA-A*02:01 B2M MHCI FLYALALLL LMP2 EBV PMID:34811538 tetramer-sort yes amplicon-seq central memory T cells T1D T1D_2 chip0420_234846 PBMC +1027 CARSPDQTSSYNEQFV TRBV27*01 TRBJ2-1*01 HLA-A*02:01 B2M MHCI YVLDHLIVV BRLF1 EBV PMID:34811538 tetramer-sort yes amplicon-seq effector memory T cells T1D T1D_1 chip0420_573807 PBMC +1029 CSVGTGGTNEKLFF TRBV29-1*01 TRBJ1-4*01 HLA-A*02:01 B2M MHCI GLCTLVAML BLMF1 EBV PMID:34811538 tetramer-sort yes amplicon-seq effector memory T cells T1D T1D_2 chip0420_874829 PBMC +1030 CTSSSGQVLPNEQFF TRBV2*01 TRBJ2-1*01 HLA-A*02:01 B2M MHCI GLCTLVAML BLMF1 EBV PMID:34811538 tetramer-sort yes amplicon-seq effector memory T cells T1D T1D_1 chip0420_752788 PBMC +1031 CSVGSRGTNEKLFF TRBV29-1*01 TRBJ1-4*01 HLA-A*02:01 B2M MHCI GLCTLVAML BLMF1 EBV PMID:34811538 tetramer-sort yes amplicon-seq effector memory T cells T1D T1D_2 chip0420_754517 PBMC +1032 CAASRVCKLLF TRAV23/DV6*01 TRAJ4*01 HLA-A*02:01 B2M MHCI YVLDHLIVV BRLF1 EBV PMID:34811538 tetramer-sort yes amplicon-seq transitional T cells between effector and memory populations T1D T1D_2 chip0420_442227 PBMC +1033 CATQQGRDSQPQHF TRBV28*01 TRBJ1-5*01 HLA-A*02:01 B2M MHCI GLCTLVAML BLMF1 EBV PMID:34811538 tetramer-sort yes amplicon-seq effector T cells T1D T1D_1 chip0420_134092 PBMC +1034 CSVGTGGTNEKLFF TRBV29-1*01 TRBJ1-4*01 HLA-A*02:01 B2M MHCI GLCTLVAML BLMF1 EBV PMID:34811538 tetramer-sort yes amplicon-seq effector T cells T1D T1D_2 chip0420_777803 PBMC +1035 CASSPGDARGEQYF TRBV5-6*01 TRBJ2-7*01 HLA-A*02:01 B2M MHCI YLLEMLWRL LMP1 EBV PMID:34811538 tetramer-sort yes amplicon-seq central memory T cells T1D T1D_1 chip0420_87894 PBMC +1036 CAESTSGGKLIF TRAV5*01 TRAJ23*01 CSVGTGGTNEKLFF TRBV29-1*01 TRBJ1-4*01 HLA-A*02:01 B2M MHCI GLCTLVAML BLMF1 EBV PMID:34811538 tetramer-sort yes amplicon-seq effector memory T cells T1D T1D_2 chip0420_172322 PBMC +1037 CAMREG??cAGQLIF TRAV14/DV4*01 TRAJ37*01 HLA-A*02:01 B2M MHCI GIIYIIYKL P3A CoxsackievirusB PMID:34811538 tetramer-sort yes amplicon-seq effector memory T cells T1D T1D_1 chip0420_695407 PBMC +1038 CASRMGAGDTQYF TRBV10-2*01 TRBJ2-3*01 HLA-A*02:01 B2M MHCI GLCTLVAML BLMF1 EBV PMID:34811538 tetramer-sort yes amplicon-seq effector T cells T1D T1D_2 chip0420_508638 PBMC +1039 CAMSISNFGNEKLTF TRAV12-3*01 TRAJ48*01 HLA-A*02:01 B2M MHCI LLAGIGTVPI PGT HomoSapiens PMID:34811538 tetramer-sort yes amplicon-seq Naive T cells T1D T1D_1 chip0420_404168 PBMC +1041 CSVGTGGTNEKLFF TRBV29-1*01 TRBJ1-4*01 HLA-A*02:01 B2M MHCI GLCTLVAML BLMF1 EBV PMID:34811538 tetramer-sort yes amplicon-seq effector T cells T1D T1D_2 chip0420_773475 PBMC +1042 CAVKDTDKLIF TRAV8-1*01 TRAJ34*01 CAWSGSGTSGIMYNEQFF TRBV30*01 TRBJ2-1*01 HLA-A*02:01 B2M MHCI YVLDHLIVV BRLF1 EBV PMID:34811538 tetramer-sort yes amplicon-seq effector memory T cells T1D T1D_2 chip0420_594595 PBMC +1044 CASSINGGRRDGYTF TRBV19*01 TRBJ1-2*01 HLA-A*02:01 B2M MHCI GILGFVFTL M1 InfluenzaA PMID:34811538 tetramer-sort yes amplicon-seq transitional T cells between effector and memory populations T1D T1D_1 chip0420_877038 PBMC +1045 CASRAGAGDTQYF TRBV10-2*01 TRBJ2-3*01 HLA-A*02:01 B2M MHCI GLCTLVAML BLMF1 EBV PMID:34811538 tetramer-sort yes amplicon-seq effector memory T cells T1D T1D_2 chip0420_798076 PBMC +1047 CGPPENDSWGKLQF TRAV30*01 TRAJ24*01 HLA-A*02:01 B2M MHCI GILGFVFTL M1 InfluenzaA PMID:34811538 tetramer-sort yes amplicon-seq transitional T cells between effector and memory populations T1D T1D_1 chip0420_284198 PBMC +1048 CSVGTGGTNEKLFF TRBV29-1*01 TRBJ1-4*01 HLA-A*02:01 B2M MHCI GLCTLVAML BLMF1 EBV PMID:34811538 tetramer-sort yes amplicon-seq effector memory T cells T1D T1D_2 chip0420_575053 PBMC +1049 CAESTSGGKLIF TRAV5*01 TRAJ23*01 CSVGTGGTNEKLFF TRBV29-1*01 TRBJ1-4*01 HLA-A*02:01 B2M MHCI GLCTLVAML BLMF1 EBV PMID:34811538 tetramer-sort yes amplicon-seq effector memory T cells T1D T1D_2 chip0420_185544 PBMC +1050 CASSPRDARGEQYF TRBV5-6*01 TRBJ2-7*01 HLA-A*02:01 B2M MHCI YLLEMLWRL LMP1 EBV PMID:34811538 tetramer-sort yes amplicon-seq central memory T cells T1D T1D_1 chip0420_818520 PBMC +1051 CASSINGGRRDGYTF TRBV19*01 TRBJ1-2*01 HLA-A*02:01 B2M MHCI GILGFVFTL M1 InfluenzaA PMID:34811538 tetramer-sort yes amplicon-seq effector T cells T1D T1D_1 chip0420_750343 PBMC +1052 CAWSGGRGVGSYNEQFF TRBV30*01 TRBJ2-1*01 HLA-A*02:01 B2M MHCI YVLDHLIVV BRLF1 EBV PMID:34811538 tetramer-sort yes amplicon-seq effector memory T cells T1D T1D_1 chip0420_105695 PBMC +1053 CASRAGAGDTQYF TRBV10-2*01 TRBJ2-3*01 HLA-A*02:01 B2M MHCI GLCTLVAML BLMF1 EBV PMID:34811538 tetramer-sort yes amplicon-seq effector memory T cells T1D T1D_2 chip0420_557254 PBMC +1054 CASSSYEQYF TRBV28*01 TRBJ2-7*01 HLA-A*02:01 B2M MHCI LLAGIGTVPI PGT HomoSapiens PMID:34811538 tetramer-sort yes amplicon-seq Naive T cells T1D T1D_1 chip0420_342634 PBMC +1057 CATQQGRDSQPQHF TRBV28*01 TRBJ1-5*01 HLA-A*02:01 B2M MHCI GLCTLVAML BLMF1 EBV PMID:34811538 tetramer-sort yes amplicon-seq effector memory T cells T1D T1D_1 chip0420_59881 PBMC +1058 CARRAGAGDTQYF TRBV10-2*01 TRBJ2-3*01 HLA-A*02:01 B2M MHCI GLCTLVAML BLMF1 EBV PMID:34811538 tetramer-sort yes amplicon-seq effector memory T cells T1D T1D_2 chip0420_23165 PBMC +1059 CVVNGGDSSYKLIF TRAV12-1*01 TRAJ12*01 CASSSGQVLPNEQFF TRBV2*01 TRBJ2-1*01 HLA-A*02:01 B2M MHCI GLCTLVAML BLMF1 EBV PMID:34811538 tetramer-sort yes amplicon-seq effector T cells T1D T1D_1 chip0420_789310 PBMC +1060 CSVGTGGTNEKLFF TRBV29-1*01 TRBJ1-4*01 HLA-A*02:01 B2M MHCI GLCTLVAML BLMF1 EBV PMID:34811538 tetramer-sort yes amplicon-seq transitional T cells between effector and memory populations T1D T1D_2 chip0420_747738 PBMC +1061 CASTDTLSLLNTGELFF TRBV28*01 TRBJ2-2*01 HLA-A*02:01 B2M MHCI YVLDHLIVV BRLF1 EBV PMID:34811538 tetramer-sort yes amplicon-seq effector memory T cells T1D T1D_2 chip0420_533333 PBMC +1062 CSVGTGGTNEKLFF TRBV29-1*01 TRBJ1-4*01 HLA-A*02:01 B2M MHCI GLCTLVAML BLMF1 EBV PMID:34811538 tetramer-sort yes amplicon-seq effector T cells T1D T1D_2 chip0420_782642 PBMC +1063 CVVNGRDSSYKLIF TRAV12-1*01 TRAJ12*01 CASSSGLVAPGELFF TRBV2*01 TRBJ2-2*01 HLA-A*02:01 B2M MHCI GLCTLVAML BLMF1 EBV PMID:34811538 tetramer-sort yes amplicon-seq effector memory T cells T1D T1D_2 chip0420_227078 PBMC +1064 CASSPVSGSTYEQYF TRBV3-1*01 TRBJ2-7*01 HLA-A*02:01 B2M MHCI GLCTLVAML BLMF1 EBV PMID:34811538 tetramer-sort yes amplicon-seq effector memory T cells T1D T1D_1 chip0420_800772 PBMC +1065 CSVGTGGTNEKLFF TRBV29-1*01 TRBJ1-4*01 HLA-A*02:01 B2M MHCI GLCTLVAML BLMF1 EBV PMID:34811538 tetramer-sort yes amplicon-seq effector memory T cells T1D T1D_2 chip0420_45191 PBMC +1066 CVVNGRDSSYKLIS TRAV12-1*01 TRAJ12*01 CASSSGLVAPGELFF TRBV2*01 TRBJ2-2*01 HLA-A*02:01 B2M MHCI GLCTLVAML BLMF1 EBV PMID:34811538 tetramer-sort yes amplicon-seq effector memory T cells T1D T1D_2 chip0420_515507 PBMC +1067 CAVRGSQGNLIF TRAV8-1*01 TRAJ42*01 CASSQVITINEQFF TRBV3-1*01 TRBJ2-1*01 HLA-A*02:01 B2M MHCI YVLDHLIVV BRLF1 EBV PMID:34811538 tetramer-sort yes amplicon-seq effector memory T cells T1D T1D_1 chip0420_285502 PBMC +1068 CASSINGGRRDGYTF TRBV19*01 TRBJ1-2*01 HLA-A*02:01 B2M MHCI GILGFVFTL M1 InfluenzaA PMID:34811538 tetramer-sort yes amplicon-seq transitional T cells between effector and memory populations T1D T1D_1 chip0420_367120 PBMC +1069 CAMSLSNFGNEKFTF TRAV12-3*01 TRAJ48*01 CASSLRHDATYEQYF TRBV28*01 TRBJ2-7*01 HLA-A*02:01 B2M MHCI LLAGIGTVPI PGT HomoSapiens PMID:34811538 tetramer-sort yes amplicon-seq Naive T cells T1D T1D_2 chip0420_703388 PBMC +1070 CVVSDVTSGTYKYIF TRAV8-2*01 TRAJ40*01 HLA-A*02:01 B2M MHCI NLFLFLFAV IGRP HomoSapiens PMID:34811538 tetramer-sort yes amplicon-seq Naive T cells T1D T1D_1 chip0420_285314 PBMC +1072 CSVGTGGTNEKLFF TRBV29-1*01 TRBJ1-4*01 HLA-A*02:01 B2M MHCI GLCTLVAML BLMF1 EBV PMID:34811538 tetramer-sort yes amplicon-seq effector memory T cells T1D T1D_2 chip0420_507781 PBMC +1073 CASSSGLVAPGELFF TRBV2*01 TRBJ2-2*01 HLA-A*02:01 B2M MHCI GLCTLVAML BLMF1 EBV PMID:34811538 tetramer-sort yes amplicon-seq effector memory T cells T1D T1D_2 chip0420_367208 PBMC +1074 CASSPKRGRNNEAFF TRBV25-1*01 TRBJ1-1*01 HLA-A*02:01 B2M MHCI YVLDHLIVV BRLF1 EBV PMID:34811538 tetramer-sort yes amplicon-seq effector memory T cells T1D T1D_2 chip0420_235070 PBMC +1075 CVVNGRDSSYKLIF TRAV12-1*01 TRAJ12*01 CASSDGRVHPGTQYF TRBV2*01 TRBJ2-5*01 HLA-A*02:01 B2M MHCI GLCTLVAML BLMF1 EBV PMID:34811538 tetramer-sort yes amplicon-seq effector memory T cells T1D T1D_1 chip0420_641567 PBMC +1076 CAPVGASGYSTLTC TRAV17*01 TRAJ11*01 CASSPQGGASEAFF TRBV6-1*01 TRBJ1-1*01 HLA-A*02:01 B2M MHCI FLYALALLL LMP2 EBV PMID:34811538 tetramer-sort yes amplicon-seq transitional T cells between effector and memory populations T1D T1D_2 chip0420_45491 PBMC +1078 CAVGGSGKLTF TRAV12-2*01 TRAJ52*01 HLA-A*02:01 B2M MHCI LLAGIGTVPI PGT HomoSapiens PMID:34811538 tetramer-sort yes amplicon-seq effector memory T cells T1D T1D_1 chip0420_496581 PBMC +1079 CASLAPGASKIIF TRAV8-6*01 TRAJ3*01 CASSSGLVAPGELFF TRBV2*01 TRBJ2-2*01 HLA-A*02:01 B2M MHCI GLCTLVAML BLMF1 EBV PMID:34811538 tetramer-sort yes amplicon-seq effector T cells T1D T1D_2 chip0420_255672 PBMC +1081 CSVGTGGTNEKLFF TRBV29-1*01 TRBJ1-4*01 HLA-A*02:01 B2M MHCI GLCTLVAML BLMF1 EBV PMID:34811538 tetramer-sort yes amplicon-seq effector T cells T1D T1D_2 chip0420_710345 PBMC +1082 CAESTSGGKLIF TRAV5*01 TRAJ23*01 CSVGTGGTNEKLFF TRBV29-1*01 TRBJ1-4*01 HLA-A*02:01 B2M MHCI GLCTLVAML BLMF1 EBV PMID:34811538 tetramer-sort yes amplicon-seq effector memory T cells T1D T1D_2 chip0420_720999 PBMC +1083 CAPLQCS??cIYRTLTW TRAV36/DV7*01 TRAJ38*01 CASSTGQLSNTGELFF TRBV9*01 TRBJ2-2*01 HLA-A*02:01 B2M MHCI GLCTLVAML BLMF1 EBV PMID:34811538 tetramer-sort yes amplicon-seq effector memory T cells T1D T1D_1 chip0420_668474 PBMC +1084 CSVGTGGTNEKLFF TRBV29-1*01 TRBJ1-4*01 HLA-A*02:01 B2M MHCI GLCTLVAML BLMF1 EBV PMID:34811538 tetramer-sort yes amplicon-seq effector memory T cells T1D T1D_2 chip0420_578580 PBMC +1086 CASSLGNTGELFF TRBV11-3*01 TRBJ2-2*01 HLA-A*02:01 B2M MHCI LLAGIGTVPI PGT HomoSapiens PMID:34811538 tetramer-sort yes amplicon-seq Naive T cells T1D T1D_1 chip0420_425265 PBMC +1087 CVVNDRDSSYKLIF TRAV12-1*01 TRAJ12*01 HLA-A*02:01 B2M MHCI GLCTLVAML BLMF1 EBV PMID:34811538 tetramer-sort yes amplicon-seq effector memory T cells T1D T1D_2 chip0420_271312 PBMC +1088 CASSPVSGSTYEQYF TRBV3-1*01 TRBJ2-7*01 HLA-A*02:01 B2M MHCI GLCTLVAML BLMF1 EBV PMID:34811538 tetramer-sort yes amplicon-seq effector memory T cells T1D T1D_1 chip0420_602068 PBMC +1089 CSVGTGGTNEKLFF TRBV29-1*01 TRBJ1-4*01 HLA-A*02:01 B2M MHCI GLCTLVAML BLMF1 EBV PMID:34811538 tetramer-sort yes amplicon-seq effector T cells T1D T1D_2 chip0420_148220 PBMC +1090 CASSPVSGSTYEQYF TRBV3-1*01 TRBJ2-7*01 HLA-A*02:01 B2M MHCI GLCTLVAML BLMF1 EBV PMID:34811538 tetramer-sort yes amplicon-seq effector memory T cells T1D T1D_1 chip0420_442949 PBMC +1091 CSVGSRGTNEKLFF TRBV29-1*01 TRBJ1-4*01 HLA-A*02:01 B2M MHCI GLCTLVAML BLMF1 EBV PMID:34811538 tetramer-sort yes amplicon-seq effector memory T cells T1D T1D_1 chip0420_175476 PBMC +1092 CSARLLAGNTGELFF TRBV20-1*01 TRBJ2-2*01 HLA-A*02:01 B2M MHCI MVWESGCTV PTPRN HomoSapiens PMID:34811538 tetramer-sort yes amplicon-seq Naive T cells T1D T1D_1 chip0420_844126 PBMC +1093 CAMGGGSGYSTLTF TRAV17*01 TRAJ11*01 CASSRQGGQDGYTF TRBV6-1*01 TRBJ1-2*01 HLA-A*02:01 B2M MHCI FLYALALLL LMP2 EBV PMID:34811538 tetramer-sort yes amplicon-seq central memory T cells T1D T1D_2 chip0420_701143 PBMC +1094 CAWSVQLAGVDEQYF TRBV30*01 TRBJ2-7*01 HLA-A*02:01 B2M MHCI YVLDHLIVV BRLF1 EBV PMID:34811538 tetramer-sort yes amplicon-seq effector memory T cells T1D T1D_2 chip0420_762607 PBMC +1096 CASSIRSAYEQYF TRBV19*01 TRBJ2-7*01 HLA-A*02:01 B2M MHCI GILGFVFTL M1 InfluenzaA PMID:34811538 tetramer-sort yes amplicon-seq transitional T cells between effector and memory populations T1D T1D_1 chip0420_729341 PBMC +1097 CAVTQGMRF TRAV12-2*01 TRAJ43*01 CSAESGTGINEQFF TRBV20-1*01 TRBJ2-1*01 HLA-A*02:01 B2M MHCI LLAGIGTVPI PGT HomoSapiens PMID:34811538 tetramer-sort yes amplicon-seq Naive T cells T1D T1D_1 chip0420_94136 PBMC +1099 CATSHLGNYNEQFF TRBV24-1*01 TRBJ2-1*01 HLA-A*02:01 B2M MHCI YVLDHLIVV BRLF1 EBV PMID:34811538 tetramer-sort yes amplicon-seq effector memory T cells T1D T1D_1 chip0420_127542 PBMC +1100 CAVNDTAPLLF TRAV8-1*01 TRAJ34*01 HLA-A*02:01 B2M MHCI YVLDHLIVV BRLF1 EBV PMID:34811538 tetramer-sort yes amplicon-seq effector memory T cells T1D T1D_2 chip0420_32404 PBMC +1101 CAVNAGGTSYGKLTF TRAV12-2*01 TRAJ52*01 CARGLAPAGTAAFF TRBV28*01 TRBJ1-1*01 HLA-A*02:01 B2M MHCI LLAGIGTVPI PGT HomoSapiens PMID:34811538 tetramer-sort yes amplicon-seq Naive T cells T1D T1D_1 chip0420_686241 PBMC +1102 CASRMGAGDTQYF TRBV10-2*01 TRBJ2-3*01 HLA-A*02:01 B2M MHCI GLCTLVAML BLMF1 EBV PMID:34811538 tetramer-sort yes amplicon-seq effector memory T cells T1D T1D_2 chip0420_794703 PBMC +1103 CSVGTGGTNEKLFF TRBV29-1*01 TRBJ1-4*01 HLA-A*02:01 B2M MHCI GLCTLVAML BLMF1 EBV PMID:34811538 tetramer-sort yes amplicon-seq effector T cells T1D T1D_2 chip0420_347034 PBMC +1104 CASSLEVGLNSYNEQFF TRBV11-2*01 TRBJ2-1*01 HLA-A*02:01 B2M MHCI LLAGIGTVPI PGT HomoSapiens PMID:34811538 tetramer-sort yes amplicon-seq central memory T cells T1D T1D_1 chip0420_785370 PBMC +1105 CSVGTGGTNEKLFF TRBV29-1*01 TRBJ1-4*01 HLA-A*02:01 B2M MHCI GLCTLVAML BLMF1 EBV PMID:34811538 tetramer-sort yes amplicon-seq effector memory T cells T1D T1D_2 chip0420_780350 PBMC +1106 CASSQDSSGGFTYEQYF TRBV4-1*01 TRBJ2-7*01 HLA-A*02:01 B2M MHCI GILGFVFTL M1 InfluenzaA PMID:34811538 tetramer-sort yes amplicon-seq transitional T cells between effector and memory populations T1D T1D_1 chip0420_248342 PBMC +1108 CAESTSGGKLIF TRAV5*01 TRAJ23*01 CSVGTGGTNEKLFF TRBV29-1*01 TRBJ1-4*01 HLA-A*02:01 B2M MHCI GLCTLVAML BLMF1 EBV PMID:34811538 tetramer-sort yes amplicon-seq effector memory T cells T1D T1D_2 chip0420_729848 PBMC +1111 CAASIELW??aGSQGNLIF TRAV13-1*01 TRAJ42*01 HLA-A*02:01 B2M MHCI YVLDHLIVV BRLF1 EBV PMID:34811538 tetramer-sort yes amplicon-seq effector T cells T1D T1D_2 chip0420_182469 PBMC +1112 CASRTGAGDTQYF TRBV10-2*01 TRBJ2-3*01 HLA-A*02:01 B2M MHCI GLCTLVAML BLMF1 EBV PMID:34811538 tetramer-sort yes amplicon-seq effector T cells T1D T1D_2 chip0420_829415 PBMC +1113 CAMSLANFGNEKLTF TRAV12-3*01 TRAJ48*01 CASSPDRRPGESQYF TRBV7-2*01,TRBV7-8*01 TRBJ2-5*01 HLA-A*02:01 B2M MHCI LLAGIGTVPI PGT HomoSapiens PMID:34811538 tetramer-sort yes amplicon-seq Naive T cells T1D T1D_1 chip0420_341360 PBMC +1115 CSVGSRGTNEKLFF TRBV29-1*01 TRBJ1-4*01 HLA-A*02:01 B2M MHCI GLCTLVAML BLMF1 EBV PMID:34811538 tetramer-sort yes amplicon-seq effector memory T cells healthy healthy_2 chip0420_84217 PBMC +1116 CASSSRSTDTQYF TRBV19*01 TRBJ2-3*01 HLA-A*02:01 B2M MHCI GILGFVFTL M1 InfluenzaA PMID:34811538 tetramer-sort yes amplicon-seq transitional T cells between effector and memory populations T1D T1D_1 chip0420_798430 PBMC +1117 CAVKDTDKLIF TRAV8-1*01 TRAJ34*01 HLA-A*02:01 B2M MHCI YVLDHLIVV BRLF1 EBV PMID:34811538 tetramer-sort yes amplicon-seq effector memory T cells T1D T1D_2 chip0420_39171 PBMC +1118 CASSPVSGSTYEQYF TRBV3-1*01 TRBJ2-7*01 HLA-A*02:01 B2M MHCI GLCTLVAML BLMF1 EBV PMID:34811538 tetramer-sort yes amplicon-seq effector memory T cells T1D T1D_1 chip0420_595347 PBMC +1119 CAVPLGGFc?tGGYTKLIF TRAV20*01 TRAJ4*01 HLA-A*02:01 B2M MHCI GILGFVFTL M1 InfluenzaA PMID:34811538 tetramer-sort yes amplicon-seq transitional T cells between effector and memory populations T1D T1D_1 chip0420_594560 PBMC +1121 CASSDGRVHPGTQYF TRBV2*01 TRBJ2-5*01 HLA-A*02:01 B2M MHCI GLCTLVAML BLMF1 EBV PMID:34811538 tetramer-sort yes amplicon-seq effector memory T cells T1D T1D_1 chip0420_250685 PBMC +1122 CASLTPGASPIIF TRAV8-6*01 TRAJ3*01 CASSSGLVAPGELFF TRBV2*01 TRBJ2-2*01 HLA-A*02:01 B2M MHCI GLCTLVAML BLMF1 EBV PMID:34811538 tetramer-sort yes amplicon-seq effector memory T cells T1D T1D_2 chip0420_439891 PBMC +1123 CATFPDGSYEQYF TRBV28*01 TRBJ2-7*01 HLA-A*02:01 B2M MHCI YLLEMLWRL LMP1 EBV PMID:34811538 tetramer-sort yes amplicon-seq central memory T cells T1D T1D_1 chip0420_236278 PBMC +1124 CASSQSPGGTQYF TRBV14*01 TRBJ2-3*01 HLA-A*02:01 B2M MHCI GLCTLVAML BLMF1 EBV PMID:34811538 tetramer-sort yes amplicon-seq effector memory T cells T1D T1D_1 chip0420_220592 PBMC +1125 CILSRYGGSHGHLIF TRAV26-2*01 TRAJ42*01 CASSPVSGSTYEQYF TRBV3-1*01 TRBJ2-7*01 HLA-A*02:01 B2M MHCI GLCTLVAML BLMF1 EBV PMID:34811538 tetramer-sort yes amplicon-seq effector memory T cells T1D T1D_1 chip0420_733602 PBMC +1126 CASSSMYGYTF TRBV6-2*01,TRBV6-3*01 TRBJ1-2*01 HLA-A*02:01 B2M MHCI YVLDHLIVV BRLF1 EBV PMID:34811538 tetramer-sort yes amplicon-seq effector T cells T1D T1D_2 chip0420_657955 PBMC +1127 CAMIRSNFGNEKLTF TRAV12-3*01 TRAJ48*01 CASSKYGTGRDTEAFF TRBV11-1*01 TRBJ1-1*01 HLA-A*02:01 B2M MHCI LLAGIGTVPI PGT HomoSapiens PMID:34811538 tetramer-sort yes amplicon-seq Naive T cells T1D T1D_1 chip0420_549346 PBMC +1128 CVVNGKDSSYKLIS TRAV12-1*01 TRAJ12*01 CASSGGAVAPSEQFF TRBV2*01 TRBJ2-1*01 HLA-A*02:01 B2M MHCI GLCTLVAML BLMF1 EBV PMID:34811538 tetramer-sort yes amplicon-seq effector memory T cells T1D T1D_2 chip0420_884533 PBMC +1129 CASSEAFPADNEQFF TRBV6-4*01 TRBJ2-1*01 HLA-A*02:01 B2M MHCI YVLDHLIVV BRLF1 EBV PMID:34811538 tetramer-sort yes amplicon-seq effector memory T cells T1D T1D_1 chip0420_512597 PBMC +1130 CVVNGRDSSYKLIF TRAV12-1*01 TRAJ12*01 CASSSGLVAPGELFF TRBV2*01 TRBJ2-2*01 HLA-A*02:01 B2M MHCI GLCTLVAML BLMF1 EBV PMID:34811538 tetramer-sort yes amplicon-seq effector T cells T1D T1D_2 chip0420_610011 PBMC +1131 CSVGTGGTNEKLFF TRBV29-1*01 TRBJ1-4*01 HLA-A*02:01 B2M MHCI GLCTLVAML BLMF1 EBV PMID:34811538 tetramer-sort yes amplicon-seq effector memory T cells T1D T1D_2 chip0420_526427 PBMC +1132 CASRAGAGDTQYF TRBV10-2*01 TRBJ2-3*01 HLA-A*02:01 B2M MHCI GLCTLVAML BLMF1 EBV PMID:34811538 tetramer-sort yes amplicon-seq effector memory T cells T1D T1D_2 chip0420_204435 PBMC +1133 CASSEAFLADNEQFF TRBV6-4*01 TRBJ2-1*01 HLA-A*02:01 B2M MHCI YVLDHLIVV BRLF1 EBV PMID:34811538 tetramer-sort yes amplicon-seq effector memory T cells T1D T1D_1 chip0420_15956 PBMC +1136 CSAGRPGVDTEAFF TRBV20-1*01 TRBJ1-1*01 HLA-A*02:01 B2M MHCI LLAGIGTVPI PGT HomoSapiens PMID:34811538 tetramer-sort yes amplicon-seq Naive T cells T1D T1D_1 chip0420_16453 PBMC +1137 CASSSGLVAPGELFF TRBV2*01 TRBJ2-2*01 HLA-A*02:01 B2M MHCI GLCTLVAML BLMF1 EBV PMID:34811538 tetramer-sort yes amplicon-seq effector memory T cells T1D T1D_2 chip0420_712320 PBMC +1138 CASSSGLVAPGELFF TRBV2*01 TRBJ2-2*01 HLA-A*02:01 B2M MHCI GLCTLVAML BLMF1 EBV PMID:34811538 tetramer-sort yes amplicon-seq effector memory T cells T1D T1D_2 chip0420_200269 PBMC +1139 CVVTSSGtt?SAGQQLLF TRAV8-2*01 TRAJ16*01 HLA-A*02:01 B2M MHCI GLCTLVAML BLMF1 EBV PMID:34811538 tetramer-sort yes amplicon-seq effector memory T cells T1D T1D_1 chip0420_214680 PBMC +1140 CAVSDTG??cRTSKYIF TRAV8-6*01 TRAJ40*01 CASSPARTSSYNEQFF TRBV27*01 TRBJ2-1*01 HLA-A*02:01 B2M MHCI YVLDHLIVV BRLF1 EBV PMID:34811538 tetramer-sort yes amplicon-seq effector T cells T1D T1D_1 chip0420_31521 PBMC +1141 WAMSISNFGSATFPF TRAV12-3*01 TRAJ48*01 CAGGPRLPRDYYGYTF TRBV6-1*01 TRBJ1-2*01 HLA-A*02:01 B2M MHCI LLAGIGTVPI PGT HomoSapiens PMID:34811538 tetramer-sort yes amplicon-seq Naive T cells T1D T1D_2 chip0420_608376 PBMC +1142 CSVGTGGTNEKLFF TRBV29-1*01 TRBJ1-4*01 HLA-A*02:01 B2M MHCI GLCTLVAML BLMF1 EBV PMID:34811538 tetramer-sort yes amplicon-seq effector memory T cells T1D T1D_2 chip0420_482609 PBMC +1143 CSVGTGGTNEKLFF TRBV29-1*01 TRBJ1-4*01 HLA-A*02:01 B2M MHCI GLCTLVAML BLMF1 EBV PMID:34811538 tetramer-sort yes amplicon-seq effector memory T cells T1D T1D_2 chip0420_121309 PBMC +1144 CSASRQGARAEAFF TRBV20-1*01 TRBJ1-1*01 HLA-A*02:01 B2M MHCI VMNILLQYV GAD65 HomoSapiens PMID:34811538 tetramer-sort yes amplicon-seq Naive T cells T1D T1D_1 chip0420_434805 PBMC +1145 CSVGTGGTNEKLFF TRBV29-1*01 TRBJ1-4*01 HLA-A*02:01 B2M MHCI GLCTLVAML BLMF1 EBV PMID:34811538 tetramer-sort yes amplicon-seq effector T cells T1D T1D_2 chip0420_191275 PBMC +1146 CAAYAGNMLTF TRAV29/DV5*01 TRAJ39*01 HLA-A*02:01 B2M MHCI GLCTLVAML BLMF1 EBV PMID:34811538 tetramer-sort yes amplicon-seq effector memory T cells T1D T1D_2 chip0420_783625 PBMC +1148 CVVNKGDYKLSF TRAV12-1*01 TRAJ20*01 CANSFLGQGALDTEAFF TRBV28*01 TRBJ1-1*01 HLA-A*02:01 B2M MHCI YLLPGWKL VP3 RotavirusA PMID:34811538 tetramer-sort yes amplicon-seq Naive T cells T1D T1D_1 chip0420_354731 PBMC +1150 CASRQGDGDTQYF TRBV10-2*01 TRBJ2-3*01 HLA-A*02:01 B2M MHCI GLCTLVAML BLMF1 EBV PMID:34811538 tetramer-sort yes amplicon-seq effector memory T cells T1D T1D_2 chip0420_731219 PBMC +1152 CSVGTGGTNEKLFF TRBV29-1*01 TRBJ1-4*01 HLA-A*02:01 B2M MHCI GLCTLVAML BLMF1 EBV PMID:34811538 tetramer-sort yes amplicon-seq effector memory T cells T1D T1D_2 chip0420_35812 PBMC +1153 CASLTPGASKIIF TRAV8-6*01 TRAJ3*01 CASSSGLVAPGELFF TRBV2*01 TRBJ2-2*01 HLA-A*02:01 B2M MHCI GLCTLVAML BLMF1 EBV PMID:34811538 tetramer-sort yes amplicon-seq effector memory T cells T1D T1D_2 chip0420_508751 PBMC +1155 CAVSDRDGGFKTIF TRAV8-4*01 TRAJ9*01 HLA-A*02:01 B2M MHCI GILGFVFTL M1 InfluenzaA PMID:34811538 tetramer-sort yes amplicon-seq transitional T cells between effector and memory populations T1D T1D_1 chip0420_321696 PBMC +1156 CAVKDTDKLIF TRAV8-1*01 TRAJ34*01 HLA-A*02:01 B2M MHCI YVLDHLIVV BRLF1 EBV PMID:34811538 tetramer-sort yes amplicon-seq effector memory T cells T1D T1D_2 chip0420_173393 PBMC +1157 CATQQGRDSQPQHF TRBV28*01 TRBJ1-5*01 HLA-A*02:01 B2M MHCI GLCTLVAML BLMF1 EBV PMID:34811538 tetramer-sort yes amplicon-seq effector memory T cells T1D T1D_1 chip0420_800805 PBMC +1158 CASSIRSTDTQYF TRBV19*01 TRBJ2-3*01 HLA-A*02:01 B2M MHCI GILGFVFTL M1 InfluenzaA PMID:34811538 tetramer-sort yes amplicon-seq transitional T cells between effector and memory populations T1D T1D_1 chip0420_791537 PBMC +1160 CASSYMSGEAFF TRBV6-2*01,TRBV6-3*01 TRBJ1-1*01 HLA-A*02:01 B2M MHCI YVLDHLIVV BRLF1 EBV PMID:34811538 tetramer-sort yes amplicon-seq effector T cells T1D T1D_2 chip0420_843378 PBMC +1161 CASSPVSGSTYEQYF TRBV3-1*01 TRBJ2-7*01 HLA-A*02:01 B2M MHCI GLCTLVAML BLMF1 EBV PMID:34811538 tetramer-sort yes amplicon-seq effector memory T cells T1D T1D_1 chip0420_510908 PBMC +1162 CASSPVSGSTYEQYF TRBV3-1*01 TRBJ2-7*01 HLA-A*02:01 B2M MHCI GLCTLVAML BLMF1 EBV PMID:34811538 tetramer-sort yes amplicon-seq effector memory T cells T1D T1D_1 chip0420_684664 PBMC +1164 CILFMLVgt?TSYGKLTF TRAV26-2*01 TRAJ52*01 CASSSGGNVDTQYF TRBV7-3*01 TRBJ2-3*01 HLA-A*02:01 B2M MHCI GLCTLVAML BLMF1 EBV PMID:34811538 tetramer-sort yes amplicon-seq effector T cells T1D T1D_1 chip0420_518271 PBMC +1165 CASSSGGNVDTQYF TRBV7-3*01 TRBJ2-3*01 HLA-A*02:01 B2M MHCI GLCTLVAML BLMF1 EBV PMID:34811538 tetramer-sort yes amplicon-seq effector memory T cells T1D T1D_1 chip0420_302360 PBMC +1166 CASSPDQTSSYNEQFF TRBV27*01 TRBJ2-1*01 HLA-A*02:01 B2M MHCI YVLDHLIVV BRLF1 EBV PMID:34811538 tetramer-sort yes amplicon-seq effector T cells T1D T1D_1 chip0420_771166 PBMC +1167 CASSTPRPQPSGANVLTF TRBV19*01 TRBJ2-6*01 HLA-A*02:01 B2M MHCI LLFNILGGWV NS4B HCV PMID:34811538 tetramer-sort yes amplicon-seq central memory T cells T1D T1D_1 chip0420_683756 PBMC +1168 CAARGKSTF TRAV23/DV6*01 TRAJ27*01 HLA-A*02:01 B2M MHCI GLCTLVAML BLMF1 EBV PMID:34811538 tetramer-sort yes amplicon-seq effector T cells T1D T1D_1 chip0420_853278 PBMC +1169 CASSVGVLSAGELFF TRBV9*01 TRBJ2-2*01 HLA-A*02:01 B2M MHCI GLCTLVAML BLMF1 EBV PMID:34811538 tetramer-sort yes amplicon-seq effector memory T cells T1D T1D_2 chip0420_139325 PBMC +1170 CASSIGSYGYTF TRBV19*01 TRBJ1-2*01 HLA-A*02:01 B2M MHCI GILGFVFTL M1 InfluenzaA PMID:34811538 tetramer-sort yes amplicon-seq transitional T cells between effector and memory populations T1D T1D_1 chip0420_231010 PBMC +1171 CAADYDQNFVF TRAV12-1*01 TRAJ26*01 HLA-A*02:01 B2M MHCI LLAGIGTVPI PGT HomoSapiens PMID:34811538 tetramer-sort yes amplicon-seq Naive T cells T1D T1D_2 chip0420_230107 PBMC +1172 CSATPGTGVNEQFF TRBV20-1*01 TRBJ2-1*01 HLA-A*02:01 B2M MHCI LLAGIGTVPI PGT HomoSapiens PMID:34811538 tetramer-sort yes amplicon-seq Naive T cells T1D T1D_1 chip0420_157070 PBMC +1173 CASSFKNTEAFF TRBV27*01 TRBJ1-1*01 HLA-A*02:01 B2M MHCI GLCTLVAML BLMF1 EBV PMID:34811538 tetramer-sort yes amplicon-seq effector memory T cells T1D T1D_2 chip0420_678455 PBMC +1174 CSVGSRGTNEKLFF TRBV29-1*01 TRBJ1-4*01 HLA-A*02:01 B2M MHCI GLCTLVAML BLMF1 EBV PMID:34811538 tetramer-sort yes amplicon-seq effector memory T cells T1D T1D_1 chip0420_588776 PBMC +1175 CAMREGVVEYGNKLVF TRAV14/DV4*01 TRAJ47*01 CARSFW??aARELFV TRBV19*01 TRBJ2-2*01 HLA-A*02:01 B2M MHCI GILGFVFTL M1 InfluenzaA PMID:34811538 tetramer-sort yes amplicon-seq transitional T cells between effector and memory populations T1D T1D_1 chip0420_504245 PBMC +1176 CGPAEPNDYKLSF TRAV30*01 TRAJ20*01 HLA-A*02:01 B2M MHCI GLCTLVAML BLMF1 EBV PMID:34811538 tetramer-sort yes amplicon-seq effector T cells T1D T1D_1 chip0420_294476 PBMC +1177 CALFNTDKLIF TRAV9-2*01 TRAJ34*01 CASSPVSGSTYEQYF TRBV3-1*01 TRBJ2-7*01 HLA-A*02:01 B2M MHCI GLCTLVAML BLMF1 EBV PMID:34811538 tetramer-sort yes amplicon-seq effector T cells T1D T1D_1 chip0420_140266 PBMC +1178 CLVRREAIta??acFGNEKLTF TRAV4*01 TRAJ48*01 HLA-A*02:01 B2M MHCI YVLDHLIVV BRLF1 EBV PMID:34811538 tetramer-sort yes amplicon-seq transitional T cells between effector and memory populations T1D T1D_2 chip0420_814520 PBMC +1179 CAVQAGSNTGKLIF TRAV20*01 TRAJ37*01 CSVEFPDSYEQYF TRBV29-1*01 TRBJ2-7*01 HLA-A*02:01 B2M MHCI YLLEMLWRL LMP1 EBV PMID:34811538 tetramer-sort yes amplicon-seq Naive T cells T1D T1D_1 chip0420_558951 PBMC +1180 CAESTSGGKLIF TRAV5*01 TRAJ23*01 CSVGTGGTNEKLFF TRBV29-1*01 TRBJ1-4*01 HLA-A*02:01 B2M MHCI GLCTLVAML BLMF1 EBV PMID:34811538 tetramer-sort yes amplicon-seq effector memory T cells T1D T1D_2 chip0420_757170 PBMC +1181 CSVGTGGTNEKLFF TRBV29-1*01 TRBJ1-4*01 HLA-A*02:01 B2M MHCI GLCTLVAML BLMF1 EBV PMID:34811538 tetramer-sort yes amplicon-seq effector memory T cells T1D T1D_2 chip0420_668841 PBMC +1183 CAVLMDSNYQLIW TRAV21*01 TRAJ33*01 HLA-A*02:01 B2M MHCI CLGGLLTMV LMP2A EBV PMID:34811538 tetramer-sort yes amplicon-seq central memory T cells T1D T1D_2 chip0420_428268 PBMC +1185 CASTHGGVIPDTQYF TRBV2*01 TRBJ2-3*01 HLA-A*02:01 B2M MHCI GLCTLVAML BLMF1 EBV PMID:34811538 tetramer-sort yes amplicon-seq effector memory T cells T1D T1D_1 chip0420_871930 PBMC +1186 CASSQSPGGTQYF TRBV14*01 TRBJ2-3*01 HLA-A*02:01 B2M MHCI GLCTLVAML BLMF1 EBV PMID:34811538 tetramer-sort yes amplicon-seq effector memory T cells T1D T1D_1 chip0420_338893 PBMC +1187 CSVGTGGTNEKLFF TRBV29-1*01 TRBJ1-4*01 HLA-A*02:01 B2M MHCI GLCTLVAML BLMF1 EBV PMID:34811538 tetramer-sort yes amplicon-seq transitional T cells between effector and memory populations T1D T1D_2 chip0420_668987 PBMC +1188 CVVNGRDSSYKLIF TRAV12-1*01 TRAJ12*01 CASSSGLVAPGELFF TRBV2*01 TRBJ2-2*01 HLA-A*02:01 B2M MHCI GLCTLVAML BLMF1 EBV PMID:34811538 tetramer-sort yes amplicon-seq effector T cells T1D T1D_2 chip0420_800531 PBMC +1189 CVVNGRDSGYKLIF TRAV12-1*01 TRAJ12*01 CASSSGLVAPGELFF TRBV2*01 TRBJ2-2*01 HLA-A*02:01 B2M MHCI GLCTLVAML BLMF1 EBV PMID:34811538 tetramer-sort yes amplicon-seq effector memory T cells T1D T1D_2 chip0420_444638 PBMC +1190 CALGGLTF TRAV8-1*01 TRAJ22*01 HLA-A*02:01 B2M MHCI YVLDHLIVV BRLF1 EBV PMID:34811538 tetramer-sort yes amplicon-seq effector T cells T1D T1D_2 chip0420_430715 PBMC +1191 CAVTWGGGNKLTS TRAV12-2*01 TRAJ10*01 CSAPLTSGMNTGELFF TRBV20-1*01 TRBJ2-2*01 HLA-A*02:01 B2M MHCI LLAGIGTVPI PGT HomoSapiens PMID:34811538 tetramer-sort yes amplicon-seq Naive T cells T1D T1D_2 chip0420_162292 PBMC +1193 CSSGSGYEQFF TRBV19*01 TRBJ2-1*01 HLA-A*02:01 B2M MHCI GILGFVFTL M1 InfluenzaA PMID:34811538 tetramer-sort yes amplicon-seq transitional T cells between effector and memory populations T1D T1D_1 chip0420_872373 PBMC +1197 CASSLVAGGPGETQYF TRBV5-6*01 TRBJ2-5*01 HLA-A*02:01 B2M MHCI YVLDHLIVV BRLF1 EBV PMID:34811538 tetramer-sort yes amplicon-seq central memory T cells T1D T1D_2 chip0420_118546 PBMC +1198 CGPEEPNDYKLSF TRAV30*01 TRAJ20*01 CASSSRSTDTQYF TRBV19*01 TRBJ2-3*01 HLA-A*02:01 B2M MHCI GILGFVFTL M1 InfluenzaA PMID:34811538 tetramer-sort yes amplicon-seq transitional T cells between effector and memory populations T1D T1D_1 chip0420_482459 PBMC +1199 CAMREGTGNFNKFYF TRAV14/DV4*01 TRAJ21*01 CASKGIDGYTF TRBV13*01 TRBJ1-2*01 HLA-A*02:01 B2M MHCI YVLDHLIVV BRLF1 EBV PMID:34811538 tetramer-sort yes amplicon-seq effector T cells T1D T1D_2 chip0420_832195 PBMC +1203 CSVGTGGTNEKLFF TRBV29-1*01 TRBJ1-4*01 HLA-A*02:01 B2M MHCI GLCTLVAML BLMF1 EBV PMID:34811538 tetramer-sort yes amplicon-seq effector memory T cells T1D T1D_2 chip0420_410248 PBMC +1204 CASSYAGGAYGYTF TRBV6-5*01 TRBJ1-2*01 HLA-A*02:01 B2M MHCI FLYALALLL LMP2 EBV PMID:34811538 tetramer-sort yes amplicon-seq central memory T cells T1D T1D_1 chip0420_12655 PBMC +1206 CAGSLSNFGHEKLTF TRAV12-3*01 TRAJ48*01 HLA-A*02:01 B2M MHCI LLAGIGTVPI PGT HomoSapiens PMID:34811538 tetramer-sort yes amplicon-seq Naive T cells T1D T1D_1 chip0420_505411 PBMC +1207 CSVGTGGTNEKLFF TRBV29-1*01 TRBJ1-4*01 HLA-A*02:01 B2M MHCI GLCTLVAML BLMF1 EBV PMID:34811538 tetramer-sort yes amplicon-seq effector T cells T1D T1D_2 chip0420_253900 PBMC +1208 CASSQSPGGTQYF TRBV14*01 TRBJ2-3*01 HLA-A*02:01 B2M MHCI GLCTLVAML BLMF1 EBV PMID:34811538 tetramer-sort yes amplicon-seq effector memory T cells T1D T1D_1 chip0420_172319 PBMC +1209 CASSE*PGYPPQHF TRBV6-1*01 TRBJ1-5*01 HLA-A*02:01 B2M MHCI GLCTLVAML BLMF1 EBV PMID:34811538 tetramer-sort yes amplicon-seq effector memory T cells T1D T1D_2 chip0420_557463 PBMC +1211 CVVNGRDSSYKLIF TRAV12-1*01 TRAJ12*01 CASSSGLVAPGELFF TRBV2*01 TRBJ2-2*01 HLA-A*02:01 B2M MHCI GLCTLVAML BLMF1 EBV PMID:34811538 tetramer-sort yes amplicon-seq effector memory T cells T1D T1D_2 chip0420_170931 PBMC +1213 CSARDRGHSGNTIYF TRBV20-1*01 TRBJ1-3*01 HLA-A*02:01 B2M MHCI LLAGIGTVPI PGT HomoSapiens PMID:34811538 tetramer-sort yes amplicon-seq Naive T cells T1D T1D_1 chip0420_66996 PBMC +1215 CIIStc??ccPIGF TRAV26-1*01 TRAJ27*01 CSAVTGGGGTEAFF TRBV20-1*01 TRBJ1-1*01 HLA-A*02:01 B2M MHCI ALAGIGILTV MART1 HomoSapiens PMID:34811538 tetramer-sort yes amplicon-seq central memory T cells T1D T1D_2 chip0420_222479 PBMC +1216 CAVKETGKLIF TRAV8-1*01 TRAJ37*01 CASTSGSGFEQYF TRBV7-9*01 TRBJ2-7*01 HLA-A*02:01 B2M MHCI YVLDHLIVV BRLF1 EBV PMID:34811538 tetramer-sort yes amplicon-seq effector T cells T1D T1D_2 chip0420_50229 PBMC +1219 CASSSGLVAPGELFF TRBV2*01 TRBJ2-2*01 HLA-A*02:01 B2M MHCI GLCTLVAML BLMF1 EBV PMID:34811538 tetramer-sort yes amplicon-seq effector memory T cells T1D T1D_2 chip0420_16135 PBMC +1221 CAESTSGGKLIF TRAV5*01 TRAJ23*01 CSVGTGGTNEKLFF TRBV29-1*01 TRBJ1-4*01 HLA-A*02:01 B2M MHCI GLCTLVAML BLMF1 EBV PMID:34811538 tetramer-sort yes amplicon-seq effector memory T cells T1D T1D_2 chip0420_548423 PBMC +1227 CGTEEPNDYKLSF TRAV30*01 TRAJ20*01 HLA-A*02:01 B2M MHCI GLCTLVAML BLMF1 EBV PMID:34811538 tetramer-sort yes amplicon-seq effector memory T cells T1D T1D_1 chip0420_576440 PBMC +1228 CASSPDQTSSYNEQFF TRBV27*01 TRBJ2-1*01 HLA-A*02:01 B2M MHCI YVLDHLIVV BRLF1 EBV PMID:34811538 tetramer-sort yes amplicon-seq effector memory T cells T1D T1D_1 chip0420_251553 PBMC +1229 CASSMGLSVGTEAFF TRBV19*01 TRBJ1-1*01 HLA-A*02:01 B2M MHCI GLCTLVAML BLMF1 EBV PMID:34811538 tetramer-sort yes amplicon-seq effector T cells T1D T1D_2 chip0420_211585 PBMC +1230 CASSLAGSEAFF TRAV14/DV4*01,TRAV9-2*01 TRAJ40*01 CASSLAGSEAFF TRBV12-3*01,TRBV12-4*01 TRBJ1-1*01 HLA-A*02:01 B2M MHCI VIVMLTPLV PTPRN HomoSapiens PMID:34811538 tetramer-sort yes amplicon-seq Naive T cells T1D T1D_2 chip0420_199173 PBMC +1231 CVVNGPDSSYKLIF TRAV12-1*01 TRAJ12*01 HLA-A*02:01 B2M MHCI GLCTLVAML BLMF1 EBV PMID:34811538 tetramer-sort yes amplicon-seq effector memory T cells T1D T1D_1 chip0420_762789 PBMC +1233 CASSPGQLSNTGELFF TRBV9*01 TRBJ2-2*01 HLA-A*02:01 B2M MHCI GLCTLVAML BLMF1 EBV PMID:34811538 tetramer-sort yes amplicon-seq effector T cells T1D T1D_1 chip0420_272742 PBMC +1234 CAMREDNAGNMLTF TRAV14/DV4*01 TRAJ39*01 HLA-A*02:01 B2M MHCI GILGFVFTL M1 InfluenzaA PMID:34811538 tetramer-sort yes amplicon-seq transitional T cells between effector and memory populations T1D T1D_1 chip0420_42782 PBMC +1235 CASSSGGNVDTQYL TRBV7-3*01 TRBJ2-3*01 HLA-A*02:01 B2M MHCI GLCTLVAML BLMF1 EBV PMID:34811538 tetramer-sort yes amplicon-seq effector memory T cells T1D T1D_1 chip0420_204603 PBMC +1236 CAYRSPPSSEKLVF TRAV38-2/DV8*01 TRAJ57*01 CSVCILAQNYNEQFF TRBV29-1*01 TRBJ2-1*01 HLA-A*02:01 B2M MHCI GLCTLVAML BLMF1 EBV PMID:34811538 tetramer-sort yes amplicon-seq effector T cells T1D T1D_1 chip0420_666761 PBMC +1237 CASSPGAARGEQYF TRBV5-6*01 TRBJ2-7*01 HLA-A*02:01 B2M MHCI YLLEMLWRL LMP1 EBV PMID:34811538 tetramer-sort yes amplicon-seq effector memory T cells T1D T1D_1 chip0420_409639 PBMC +1238 CAEPIPgg?S*QKLTF TRAV5*01 TRAJ13*01 CASTPDINTEAFF TRBV6-1*01 TRBJ1-1*01 HLA-A*02:01 B2M MHCI GLCTLVAML BLMF1 EBV PMID:34811538 tetramer-sort yes amplicon-seq transitional T cells between effector and memory populations T1D T1D_2 chip0420_859511 PBMC +1239 CGTEEPNDYKLSF TRAV30*01 TRAJ20*01 CASSTGQLSNTGELFF TRBV9*01 TRBJ2-2*01 HLA-A*02:01 B2M MHCI GLCTLVAML BLMF1 EBV PMID:34811538 tetramer-sort yes amplicon-seq effector T cells T1D T1D_1 chip0420_837619 PBMC +1240 CASSEFRGADTQYF TRBV2*01 TRBJ2-3*01 HLA-A*02:01 B2M MHCI LLPPLLEHL PTPRN HomoSapiens PMID:34811538 tetramer-sort yes amplicon-seq Naive T cells T1D T1D_1 chip0420_557689 PBMC +1241 RAVNGRGDMRF TRAV12-2*01 TRAJ43*01 CATSDLAGGLNEQFF TRBV24-1*01 TRBJ2-1*01 HLA-A*02:01 B2M MHCI LLAGIGTVPI PGT HomoSapiens PMID:34811538 tetramer-sort yes amplicon-seq Naive T cells T1D T1D_1 chip0420_110157 PBMC +1242 CVVNGRDSSYKLIF TRAV12-1*01 TRAJ12*01 CASSSGLVAPGELFF TRBV2*01 TRBJ2-2*01 HLA-A*02:01 B2M MHCI GLCTLVAML BLMF1 EBV PMID:34811538 tetramer-sort yes amplicon-seq effector memory T cells T1D T1D_2 chip0420_165135 PBMC +1243 CAEDSNARLMF TRAV5*01 TRAJ31*01 CSVGTGGTNEKLFF TRBV29-1*01 TRBJ1-4*01 HLA-A*02:01 B2M MHCI GLCTLVAML BLMF1 EBV PMID:34811538 tetramer-sort yes amplicon-seq effector memory T cells T1D T1D_1 chip0420_460705 PBMC +1244 CAMRVQMDSNYQLIW TRAV14/DV4*01 TRAJ33*01 CASSLESGLLHNEQFF TRBV11-3*01 TRBJ2-1*01 HLA-A*02:01 B2M MHCI GLCTLVAML BLMF1 EBV PMID:34811538 tetramer-sort yes amplicon-seq effector memory T cells T1D T1D_2 chip0420_709846 PBMC +1245 CASSPHLGAAAEQYF TRBV19*01 TRBJ2-7*01 HLA-A*02:01 B2M MHCI YVLDHLIVV BRLF1 EBV PMID:34811538 tetramer-sort yes amplicon-seq effector T cells T1D T1D_1 chip0420_280387 PBMC +1246 CASSPDQTSSYNEQFF TRBV27*01 TRBJ2-1*01 HLA-A*02:01 B2M MHCI YVLDHLIVV BRLF1 EBV PMID:34811538 tetramer-sort yes amplicon-seq effector memory T cells T1D T1D_1 chip0420_152824 PBMC +1248 CSVGSRGTNEKLFF TRBV29-1*01 TRBJ1-4*01 HLA-A*02:01 B2M MHCI GLCTLVAML BLMF1 EBV PMID:34811538 tetramer-sort yes amplicon-seq effector memory T cells T1D T1D_1 chip0420_677852 PBMC +1249 CASNLAGNNEQFF TRBV9*01 TRBJ2-1*01 HLA-A*02:01 B2M MHCI GLCTLVAML BLMF1 EBV PMID:34811538 tetramer-sort yes amplicon-seq effector T cells T1D T1D_2 chip0420_856007 PBMC +1250 CAESTSGGRLIF TRAV5*01 TRAJ23*01 CSVGTGGTNEKLFF TRBV29-1*01 TRBJ1-4*01 HLA-A*02:01 B2M MHCI GLCTLVAML BLMF1 EBV PMID:34811538 tetramer-sort yes amplicon-seq effector T cells T1D T1D_2 chip0420_440503 PBMC +1251 CSVGQALYNEQFF TRBV29-1*01 TRBJ2-1*01 HLA-A*02:01 B2M MHCI YVLDHLIVV BRLF1 EBV PMID:34811538 tetramer-sort yes amplicon-seq effector memory T cells T1D T1D_2 chip0420_206304 PBMC +1252 CAWRGVSGSYNEQFF TRBV30*01 TRBJ2-1*01 HLA-A*02:01 B2M MHCI YVLDHLIVV BRLF1 EBV PMID:34811538 tetramer-sort yes amplicon-seq effector T cells T1D T1D_2 chip0420_238075 PBMC +1253 CASSTGQLSNTGELFF TRBV9*01 TRBJ2-2*01 HLA-A*02:01 B2M MHCI GLCTLVAML BLMF1 EBV PMID:34811538 tetramer-sort yes amplicon-seq effector T cells T1D T1D_1 chip0420_533520 PBMC +1254 CASSGRSTDTQYF TRBV19*01 TRBJ2-3*01 HLA-A*02:01 B2M MHCI GILGFVFTL M1 InfluenzaA PMID:34811538 tetramer-sort yes amplicon-seq transitional T cells between effector and memory populations T1D T1D_1 chip0420_633188 PBMC +1256 CALYNTDKLIF TRAV9-2*01 TRAJ34*01 CASSPVSGSTYEQYF TRBV3-1*01 TRBJ2-7*01 HLA-A*02:01 B2M MHCI GLCTLVAML BLMF1 EBV PMID:34811538 tetramer-sort yes amplicon-seq effector memory T cells T1D T1D_1 chip0420_281749 PBMC +1257 CASSDGRVHPGTQYF TRBV2*01 TRBJ2-5*01 HLA-A*02:01 B2M MHCI GLCTLVAML BLMF1 EBV PMID:34811538 tetramer-sort yes amplicon-seq effector T cells T1D T1D_1 chip0420_6345 PBMC +1258 CAFMDLGKLIF TRAV38-1*01 TRAJ37*01 HLA-A*02:01 B2M MHCI RGPGRAFVTI GP160 HIV-1 PMID:34811538 tetramer-sort yes amplicon-seq central memory T cells T1D T1D_2 chip0420_843875 PBMC +1260 CPSSAGPGGTQYF TRBV10-2*01 TRBJ2-3*01 HLA-A*02:01 B2M MHCI GLCTLVAML BLMF1 EBV PMID:34811538 tetramer-sort yes amplicon-seq effector memory T cells T1D T1D_2 chip0420_96456 PBMC +1261 CASSTGQLSNTGELFF TRBV9*01 TRBJ2-2*01 HLA-A*02:01 B2M MHCI GLCTLVAML BLMF1 EBV PMID:34811538 tetramer-sort yes amplicon-seq effector T cells T1D T1D_1 chip0420_72169 PBMC +1262 CASSPVSGSTYEQYF TRBV3-1*01 TRBJ2-7*01 HLA-A*02:01 B2M MHCI GLCTLVAML BLMF1 EBV PMID:34811538 tetramer-sort yes amplicon-seq effector T cells T1D T1D_1 chip0420_434613 PBMC +1263 CSATSGSLSSYNEQFF TRBV20-1*01 TRBJ2-1*01 HLA-A*02:01 B2M MHCI LLFNILGGWV NS4B HCV PMID:34811538 tetramer-sort yes amplicon-seq Naive T cells T1D T1D_1 chip0420_32343 PBMC +1264 CASSVRAGETQYF TRBV19*01 TRBJ2-5*01 HLA-A*02:01 B2M MHCI GILGFVFTL M1 InfluenzaA PMID:34811538 tetramer-sort yes amplicon-seq transitional T cells between effector and memory populations T1D T1D_1 chip0420_738356 PBMC +1265 CAAYAGNMLTF TRAV29/DV5*01 TRAJ39*01 CASRMGAGDTQYF TRBV10-2*01 TRBJ2-3*01 HLA-A*02:01 B2M MHCI GLCTLVAML BLMF1 EBV PMID:34811538 tetramer-sort yes amplicon-seq effector memory T cells T1D T1D_2 chip0420_526250 PBMC +1266 CSVGTGGTNEKLFF TRBV29-1*01 TRBJ1-4*01 HLA-A*02:01 B2M MHCI GLCTLVAML BLMF1 EBV PMID:34811538 tetramer-sort yes amplicon-seq effector memory T cells T1D T1D_2 chip0420_374269 PBMC +1267 CALHREGKSTF TRAV8-1*01 TRAJ27*01 HLA-A*02:01 B2M MHCI YVLDHLIVV BRLF1 EBV PMID:34811538 tetramer-sort yes amplicon-seq effector T cells T1D T1D_1 chip0420_861040 PBMC +1268 CASSLAQVAGGNEQFF TRBV12-3*01,TRBV12-4*01 TRBJ2-1*01 HLA-A*02:01 B2M MHCI GLCTLVAML BLMF1 EBV PMID:34811538 tetramer-sort yes amplicon-seq effector memory T cells T1D T1D_2 chip0420_293655 PBMC +1269 CSVGGSFYGYTF TRBV29-1*01 TRBJ1-2*01 HLA-A*02:01 B2M MHCI GLCTLVAML BLMF1 EBV PMID:34811538 tetramer-sort yes amplicon-seq effector memory T cells tet_neg chip0420_155065 PBMC +1271 CSVTTDRNSNQPQHF TRBV29-1*01 TRBJ1-5*01 HLA-A*02:01 B2M MHCI GLCTLVAML BLMF1 EBV PMID:34811538 tetramer-sort yes amplicon-seq effector memory T cells T1D T1D_1 chip0420_93141 PBMC +1272 CVVNGRDSSYKLIF TRAV12-1*01 TRAJ12*01 CASSDGRVHPGTQYF TRBV2*01 TRBJ2-5*01 HLA-A*02:01 B2M MHCI GLCTLVAML BLMF1 EBV PMID:34811538 tetramer-sort yes amplicon-seq effector memory T cells T1D T1D_1 chip0420_157210 PBMC +1273 CAVKDTDKLIF TRAV8-1*01 TRAJ34*01 CSVGTGGTNEKLFF TRBV29-1*01 TRBJ1-4*01 HLA-A*02:01 B2M MHCI YVLDHLIVV BRLF1 EBV PMID:34811538 tetramer-sort yes amplicon-seq effector T cells T1D T1D_2 chip0420_118412 PBMC +1274 CAVLSGAGSYQLTF TRAV12-2*01 TRAJ28*01 CASSPNYGYTF TRBV7-9*01 TRBJ1-2*01 HLA-A*02:01 B2M MHCI KMYAFTLES ZNT8 HomoSapiens PMID:34811538 tetramer-sort yes amplicon-seq Naive T cells T1D T1D_2 chip0420_33025 PBMC +1275 CAGNYGGSQGNLIF TRAV25*01 TRAJ42*01 CASSSRSTDTQYF TRBV19*01 TRBJ2-3*01 HLA-A*02:01 B2M MHCI GILGFVFTL M1 InfluenzaA PMID:34811538 tetramer-sort yes amplicon-seq transitional T cells between effector and memory populations T1D T1D_1 chip0420_246891 PBMC +1276 CAVEGGVSGGGNKLTF TRAV22*01 TRAJ10*01 HLA-A*02:01 B2M MHCI ALWMRLLPL PREINS HomoSapiens PMID:34811538 tetramer-sort yes amplicon-seq Naive T cells T1D T1D_2 chip0420_199255 PBMC +1277 CASSSGLVAPGELFF TRBV2*01 TRBJ2-2*01 HLA-A*02:01 B2M MHCI GLCTLVAML BLMF1 EBV PMID:34811538 tetramer-sort yes amplicon-seq effector memory T cells T1D T1D_2 chip0420_597236 PBMC +1278 CASSQSPGGTQYF TRBV14*01 TRBJ2-3*01 HLA-A*02:01 B2M MHCI GLCTLVAML BLMF1 EBV PMID:34811538 tetramer-sort yes amplicon-seq effector memory T cells T1D T1D_1 chip0420_849850 PBMC +1280 CSVGTGGTNEKLFF TRBV29-1*01 TRBJ1-4*01 HLA-A*02:01 B2M MHCI GLCTLVAML BLMF1 EBV PMID:34811538 tetramer-sort yes amplicon-seq effector T cells T1D T1D_2 chip0420_322086 PBMC +1281 CSVGTGGTNEKLFF TRBV29-1*01 TRBJ1-4*01 HLA-A*02:01 B2M MHCI GLCTLVAML BLMF1 EBV PMID:34811538 tetramer-sort yes amplicon-seq effector memory T cells T1D T1D_2 chip0420_707821 PBMC +1282 CVVNGRDSSYKLIF TRAV12-1*01 TRAJ12*01 CASSSGLVAPGELFF TRBV2*01 TRBJ2-2*01 HLA-A*02:01 B2M MHCI GLCTLVAML BLMF1 EBV PMID:34811538 tetramer-sort yes amplicon-seq effector memory T cells T1D T1D_2 chip0420_807725 PBMC +1283 CSVGTGGTNEKLFF TRBV29-1*01 TRBJ1-4*01 HLA-A*02:01 B2M MHCI GLCTLVAML BLMF1 EBV PMID:34811538 tetramer-sort yes amplicon-seq effector T cells T1D T1D_2 chip0420_308135 PBMC +1284 CAEDNNARLMF TRAV5*01 TRAJ31*01 CSVDQRTGQKKNYGYTF TRBV29-1*01 TRBJ1-2*01 HLA-A*02:01 B2M MHCI GLCTLVAML BLMF1 EBV PMID:34811538 tetramer-sort yes amplicon-seq effector memory T cells T1D T1D_2 chip0420_238120 PBMC +1285 CSVGTGGTNEKLFF TRBV29-1*01 TRBJ1-4*01 HLA-A*02:01 B2M MHCI GLCTLVAML BLMF1 EBV PMID:34811538 tetramer-sort yes amplicon-seq effector memory T cells T1D T1D_2 chip0420_679539 PBMC +1287 CASRMGAGDTQYF TRBV10-2*01 TRBJ2-3*01 HLA-A*02:01 B2M MHCI GLCTLVAML BLMF1 EBV PMID:34811538 tetramer-sort yes amplicon-seq effector memory T cells T1D T1D_2 chip0420_765724 PBMC +1288 CASSDRAGETQYF TRBV19*01 TRBJ2-5*01 HLA-A*02:01 B2M MHCI GILGFVFTL M1 InfluenzaA PMID:34811538 tetramer-sort yes amplicon-seq effector T cells T1D T1D_1 chip0420_149447 PBMC +1291 CASRMGAGDTQYF TRBV10-2*01 TRBJ2-3*01 HLA-A*02:01 B2M MHCI GLCTLVAML BLMF1 EBV PMID:34811538 tetramer-sort yes amplicon-seq effector memory T cells T1D T1D_2 chip0420_243415 PBMC +1292 CASSALLGGAYGYTF TRBV27*01 TRBJ1-2*01 HLA-A*02:01 B2M MHCI YVLDHLIVV BRLF1 EBV PMID:34811538 tetramer-sort yes amplicon-seq effector memory T cells T1D T1D_2 chip0420_147344 PBMC +1293 CASSKRSTDTQYF TRBV19*01 TRBJ2-3*01 HLA-A*02:01 B2M MHCI GILGFVFTL M1 InfluenzaA PMID:34811538 tetramer-sort yes amplicon-seq transitional T cells between effector and memory populations T1D T1D_1 chip0420_755846 PBMC +1294 CAVNADGQKLLF TRAV8-1*01 TRAJ16*01 CAWRPLLGGASEAFF TRBV30*01 TRBJ1-1*01 HLA-A*02:01 B2M MHCI YVLDHLIVV BRLF1 EBV PMID:34811538 tetramer-sort yes amplicon-seq effector memory T cells T1D T1D_2 chip0420_599221 PBMC +1296 CAAYAGNMLTF TRAV29/DV5*01 TRAJ39*01 CASRMGAGDTQYF TRBV10-2*01 TRBJ2-3*01 HLA-A*02:01 B2M MHCI GLCTLVAML BLMF1 EBV PMID:34811538 tetramer-sort yes amplicon-seq effector memory T cells T1D T1D_2 chip0420_113457 PBMC +1297 CAVSDtt?GNDMRF TRAV8-4*01,TRAV8-6*01 TRAJ43*01 CSVGSRGTNEKLFF TRBV29-1*01 TRBJ1-4*01 HLA-A*02:01 B2M MHCI GLCTLVAML BLMF1 EBV PMID:34811538 tetramer-sort yes amplicon-seq effector memory T cells T1D T1D_1 chip0420_189740 PBMC +1299 CASSSGGHVDTQYF TRBV7-3*01 TRBJ2-3*01 HLA-A*02:01 B2M MHCI GLCTLVAML BLMF1 EBV PMID:34811538 tetramer-sort yes amplicon-seq effector memory T cells T1D T1D_1 chip0420_137920 PBMC +1300 CASSPDQTSSYNEQFF TRBV27*01 TRBJ2-1*01 HLA-A*02:01 B2M MHCI YVLDHLIVV BRLF1 EBV PMID:34811538 tetramer-sort yes amplicon-seq effector memory T cells T1D T1D_1 chip0420_684133 PBMC +1302 CALYNTDKLIF TRAV9-2*01 TRAJ34*01 CASSPVSGSTYEQYF TRBV3-1*01 TRBJ2-7*01 HLA-A*02:01 B2M MHCI GLCTLVAML BLMF1 EBV PMID:34811538 tetramer-sort yes amplicon-seq effector memory T cells T1D T1D_1 chip0420_51472 PBMC +1304 CSVGSRGTNEKLFF TRBV29-1*01 TRBJ1-4*01 HLA-A*02:01 B2M MHCI GLCTLVAML BLMF1 EBV PMID:34811538 tetramer-sort yes amplicon-seq effector memory T cells T1D T1D_1 chip0420_465748 PBMC +1305 CSVGTGGTNEKLFF TRBV29-1*01 TRBJ1-4*01 HLA-A*02:01 B2M MHCI GLCTLVAML BLMF1 EBV PMID:34811538 tetramer-sort yes amplicon-seq effector memory T cells T1D T1D_2 chip0420_286243 PBMC +1306 CAWSVQLAGVDEQYF TRBV30*01 TRBJ2-7*01 HLA-A*02:01 B2M MHCI YVLDHLIVV BRLF1 EBV PMID:34811538 tetramer-sort yes amplicon-seq effector memory T cells T1D T1D_2 chip0420_298360 PBMC +1307 CASSQSPGGTQYF TRBV14*01 TRBJ2-3*01 HLA-A*02:01 B2M MHCI GLCTLVAML BLMF1 EBV PMID:34811538 tetramer-sort yes amplicon-seq effector memory T cells T1D T1D_1 chip0420_272862 PBMC +1308 CAGAGGGSQGNLIF TRAV27*01 TRAJ42*01 CASSPRSTDTQYF TRBV19*01 TRBJ2-3*01 HLA-A*02:01 B2M MHCI GILGFVFTL M1 InfluenzaA PMID:34811538 tetramer-sort yes amplicon-seq transitional T cells between effector and memory populations T1D T1D_1 chip0420_73136 PBMC +1309 CAVR*GRaa??ccRGYWLTF TRAV41*01 TRAJ10*01 HLA-A*02:01 B2M MHCI GIVEQCCTSI INS HomoSapiens PMID:34811538 tetramer-sort yes amplicon-seq transitional T cells between effector and memory populations T1D T1D_2 chip0420_613069 PBMC +1310 CSVGTGGTNEKLFF TRBV29-1*01 TRBJ1-4*01 HLA-A*02:01 B2M MHCI GLCTLVAML BLMF1 EBV PMID:34811538 tetramer-sort yes amplicon-seq effector T cells T1D T1D_2 chip0420_273211 PBMC +1311 CAWTIDRGEQYF TRBV30*01 TRBJ2-7*01 HLA-A*02:01 B2M MHCI GIIYIIYKL P3A CoxsackievirusB PMID:34811538 tetramer-sort yes amplicon-seq central memory T cells T1D T1D_2 chip0420_367757 PBMC +1312 CAESTSGGKLIF TRAV5*01 TRAJ23*01 HLA-A*02:01 B2M MHCI GLCTLVAML BLMF1 EBV PMID:34811538 tetramer-sort yes amplicon-seq effector memory T cells T1D T1D_2 chip0420_557609 PBMC +1313 CVVGVYGGGHGHLIF TRAV8-2*01 TRAJ42*01 CARRFFDSENYGYTL TRBV28*01 TRBJ1-2*01 HLA-A*02:01 B2M MHCI YVLDHLIVV BRLF1 EBV PMID:34811538 tetramer-sort yes amplicon-seq effector memory T cells T1D T1D_1 chip0420_587233 PBMC +1314 CASSSGQVLPNEQFF TRBV2*01 TRBJ2-1*01 HLA-A*02:01 B2M MHCI GLCTLVAML BLMF1 EBV PMID:34811538 tetramer-sort yes amplicon-seq effector T cells T1D T1D_1 chip0420_767312 PBMC +1315 CSVGSRGTNEKLFF TRBV29-1*01 TRBJ1-4*01 HLA-A*02:01 B2M MHCI GLCTLVAML BLMF1 EBV PMID:34811538 tetramer-sort yes amplicon-seq effector memory T cells T1D T1D_1 chip0420_356443 PBMC +1316 CAESTSGGKLIF TRAV5*01 TRAJ23*01 CSVGTGGTNEKLFF TRBV29-1*01 TRBJ1-4*01 HLA-A*02:01 B2M MHCI GLCTLVAML BLMF1 EBV PMID:34811538 tetramer-sort yes amplicon-seq effector memory T cells T1D T1D_2 chip0420_268450 PBMC +1317 CAAYAGNMLTF TRAV29/DV5*01 TRAJ39*01 CASRMGAGDTQYF TRBV10-2*01 TRBJ2-3*01 HLA-A*02:01 B2M MHCI GLCTLVAML BLMF1 EBV PMID:34811538 tetramer-sort yes amplicon-seq effector memory T cells T1D T1D_2 chip0420_291056 PBMC +1318 CAASISNFGNEKLTF TRAV12-3*01 TRAJ48*01 HLA-A*02:01 B2M MHCI LLAGIGTVPI PGT HomoSapiens PMID:34811538 tetramer-sort yes amplicon-seq Naive T cells T1D T1D_1 chip0420_669225 PBMC +1319 CASSIRSSYEQYF TRBV19*01 TRBJ2-7*01 HLA-A*02:01 B2M MHCI GILGFVFTL M1 InfluenzaA PMID:34811538 tetramer-sort yes amplicon-seq transitional T cells between effector and memory populations T1D T1D_1 chip0420_470304 PBMC +1320 CASSEWTGYQPQHF TRBV6-1*01 TRBJ1-5*01 HLA-A*02:01 B2M MHCI GLCTLVAML BLMF1 EBV PMID:34811538 tetramer-sort yes amplicon-seq effector T cells T1D T1D_2 chip0420_699652 PBMC +1321 CAFGGLTF TRAV8-1*01 TRAJ22*01 CASSPSTSGSGETQYF TRBV3-1*01 TRBJ2-5*01 HLA-A*02:01 B2M MHCI YVLDHLIVV BRLF1 EBV PMID:34811538 tetramer-sort yes amplicon-seq effector memory T cells T1D T1D_2 chip0420_529543 PBMC +1322 CVVNGRDSSYKLIF TRAV12-1*01 TRAJ12*01 CASSSGLVAPGELFF TRBV2*01 TRBJ2-2*01 HLA-A*02:01 B2M MHCI GLCTLVAML BLMF1 EBV PMID:34811538 tetramer-sort yes amplicon-seq effector memory T cells T1D T1D_2 chip0420_163741 PBMC +1323 CASSPWg?cSYGLHL TRBV28*01 TRBJ1-2*01 HLA-A*02:01 B2M MHCI YLLEMLWRL LMP1 EBV PMID:34811538 tetramer-sort yes amplicon-seq Naive T cells T1D T1D_1 chip0420_74926 PBMC +1324 LCQ*Ycg??ggTPVFF TRBV19*01 TRBJ2-1*01 HLA-A*02:01 B2M MHCI GILGFVFTL M1 InfluenzaA PMID:34811538 tetramer-sort yes amplicon-seq transitional T cells between effector and memory populations T1D T1D_1 chip0420_865150 PBMC +1325 CASSSGQVLPNEQFF TRBV2*01 TRBJ2-1*01 HLA-A*02:01 B2M MHCI GLCTLVAML BLMF1 EBV PMID:34811538 tetramer-sort yes amplicon-seq transitional T cells between effector and memory populations T1D T1D_1 chip0420_514465 PBMC +1326 CASSTGQLSNTGELFF TRBV9*01 TRBJ2-2*01 HLA-A*02:01 B2M MHCI GLCTLVAML BLMF1 EBV PMID:34811538 tetramer-sort yes amplicon-seq effector T cells T1D T1D_1 chip0420_227983 PBMC +1327 CAEIKAGNMLTF TRAV13-2*01 TRAJ39*01 CASSQEMgg?VMNTEAFF TRBV4-3*01 TRBJ1-1*01 HLA-A*02:01 B2M MHCI YVLDHLIVV BRLF1 EBV PMID:34811538 tetramer-sort yes amplicon-seq effector memory T cells T1D T1D_2 chip0420_104648 PBMC +1328 CAWSRGNTEAFF TRAV41*01 TRAJ40*01 CAWSRGNTEAFF TRBV30*01 TRBJ1-1*01 HLA-A*02:01 B2M MHCI GIIYIIYKL P3A CoxsackievirusB PMID:34811538 tetramer-sort yes amplicon-seq Naive T cells T1D T1D_1 chip0420_299526 PBMC +1329 CADLRGGRLIF TRAV5*01 TRAJ23*01 CSVGGTFYGYTF TRBV29-1*01 TRBJ1-2*01 HLA-A*02:01 B2M MHCI GLCTLVAML BLMF1 EBV PMID:34811538 tetramer-sort yes amplicon-seq transitional T cells between effector and memory populations T1D T1D_2 chip0420_768622 PBMC +1330 CASSMRSAYEQYS TRBV19*01 TRBJ2-7*01 HLA-A*02:01 B2M MHCI GILGFVFTL M1 InfluenzaA PMID:34811538 tetramer-sort yes amplicon-seq transitional T cells between effector and memory populations T1D T1D_1 chip0420_742081 PBMC +1333 CSVGSRGTNEKLFF TRBV29-1*01 TRBJ1-4*01 HLA-A*02:01 B2M MHCI GLCTLVAML BLMF1 EBV PMID:34811538 tetramer-sort yes amplicon-seq effector memory T cells T1D T1D_1 chip0420_707526 PBMC +1334 CATQQGRDSQPQHF TRBV28*01 TRBJ1-5*01 HLA-A*02:01 B2M MHCI GLCTLVAML BLMF1 EBV PMID:34811538 tetramer-sort yes amplicon-seq effector memory T cells T1D T1D_1 chip0420_525422 PBMC +1335 CASSEAFLADNEQFF TRBV6-4*01 TRBJ2-1*01 HLA-A*02:01 B2M MHCI YVLDHLIVV BRLF1 EBV PMID:34811538 tetramer-sort yes amplicon-seq effector memory T cells T1D T1D_1 chip0420_190246 PBMC +1336 *AVG??cREDF TRAV2*01 TRAJ11*01,TRAJ14*01 CASRMGAGDTQYF TRBV10-2*01 TRBJ2-3*01 HLA-A*02:01 B2M MHCI GLCTLVAML BLMF1 EBV PMID:34811538 tetramer-sort yes amplicon-seq effector memory T cells T1D T1D_2 chip0420_668099 PBMC +1337 CGTEEPNDYKLSF TRAV30*01 TRAJ20*01 CASSTGQLSNTGELFF TRBV9*01 TRBJ2-2*01 HLA-A*02:01 B2M MHCI GLCTLVAML BLMF1 EBV PMID:34811538 tetramer-sort yes amplicon-seq effector memory T cells T1D T1D_1 chip0420_587977 PBMC +1338 CATSSGGYNKLIF TRAV12-3*01 TRAJ4*01 HLA-A*02:01 B2M MHCI LLAGIGTVPI PGT HomoSapiens PMID:34811538 tetramer-sort yes amplicon-seq Naive T cells T1D T1D_2 chip0420_322824 PBMC +1339 CASSPVSGSTYEQYF TRBV3-1*01 TRBJ2-7*01 HLA-A*02:01 B2M MHCI GLCTLVAML BLMF1 EBV PMID:34811538 tetramer-sort yes amplicon-seq effector memory T cells T1D T1D_1 chip0420_812505 PBMC +1340 CAFMKVWGGSEKLVF TRAV38-1*01 TRAJ57*01 CASSYAGGPVNTEAFF TRBV6-5*01 TRBJ1-1*01 HLA-A*02:01 B2M MHCI YLLEMLWRL LMP1 EBV PMID:34811538 tetramer-sort yes amplicon-seq Naive T cells T1D T1D_1 chip0420_475963 PBMC +1341 CAVNGGNKLVF TRAV12-2*01 TRAJ47*01 CSAVTGGGGTEAFF TRBV20-1*01 TRBJ1-1*01 HLA-A*02:01 B2M MHCI ALAGIGILTV MART1 HomoSapiens PMID:34811538 tetramer-sort yes amplicon-seq central memory T cells T1D T1D_2 chip0420_814149 PBMC +1342 CSVGTGGTNEKLFF TRBV29-1*01 TRBJ1-4*01 HLA-A*02:01 B2M MHCI GLCTLVAML BLMF1 EBV PMID:34811538 tetramer-sort yes amplicon-seq effector T cells T1D T1D_2 chip0420_859246 PBMC +1343 CAVGGRTYHFIF TRAV8-3*01 TRAJ40*01 CASSWTASYEQYF TRBV6-2*01,TRBV6-3*01 TRBJ2-7*01 HLA-A*02:01 B2M MHCI YVLDHLIVV BRLF1 EBV PMID:34811538 tetramer-sort yes amplicon-seq effector memory T cells T1D T1D_2 chip0420_816889 PBMC +1344 CAVSAP*a?tNNARLMF TRAV8-6*01 TRAJ31*01 HLA-A*02:01 B2M MHCI YVLDHLIVV BRLF1 EBV PMID:34811538 tetramer-sort yes amplicon-seq effector memory T cells T1D T1D_2 chip0420_153838 PBMC +1345 CAISAGTLSSYNEQFL TRBV10-3*01 TRBJ2-1*01 HLA-A*02:01 B2M MHCI YVLDHLIVV BRLF1 EBV PMID:34811538 tetramer-sort yes amplicon-seq effector T cells T1D T1D_1 chip0420_833180 PBMC +1346 CVVNGRDSSYKLIF TRAV12-1*01 TRAJ12*01 CSVGSRGTNEKLFF TRBV29-1*01 TRBJ1-4*01 HLA-A*02:01 B2M MHCI GLCTLVAML BLMF1 EBV PMID:34811538 tetramer-sort yes amplicon-seq effector T cells T1D T1D_1 chip0420_495749 PBMC +1347 CVVNGGDSSYKLIF TRAV12-1*01 TRAJ12*01 CASSGFNEQFF TRBV19*01 TRBJ2-1*01 HLA-A*02:01 B2M MHCI YVLDHLIVV BRLF1 EBV PMID:34811538 tetramer-sort yes amplicon-seq effector memory T cells T1D T1D_2 chip0420_440390 PBMC +1348 CASSSGGNVDTQYF TRBV7-3*01 TRBJ2-3*01 HLA-A*02:01 B2M MHCI GLCTLVAML BLMF1 EBV PMID:34811538 tetramer-sort yes amplicon-seq effector memory T cells T1D T1D_1 chip0420_437349 PBMC +1349 CAWSVQLAGVDEQYF TRBV30*01 TRBJ2-7*01 HLA-A*02:01 B2M MHCI YVLDHLIVV BRLF1 EBV PMID:34811538 tetramer-sort yes amplicon-seq effector memory T cells T1D T1D_2 chip0420_126386 PBMC +1351 CAMREGTGNFNKFYF TRAV14/DV4*01 TRAJ21*01 CASKGIDGYTF TRBV13*01 TRBJ1-2*01 HLA-A*02:01 B2M MHCI YVLDHLIVV BRLF1 EBV PMID:34811538 tetramer-sort yes amplicon-seq effector T cells T1D T1D_2 chip0420_155364 PBMC +1352 CASSSGLVAPGELFF TRBV2*01 TRBJ2-2*01 HLA-A*02:01 B2M MHCI GLCTLVAML BLMF1 EBV PMID:34811538 tetramer-sort yes amplicon-seq effector T cells T1D T1D_2 chip0420_838787 PBMC +1355 CASRAGAGDTQYF TRBV10-2*01 TRBJ2-3*01 HLA-A*02:01 B2M MHCI GLCTLVAML BLMF1 EBV PMID:34811538 tetramer-sort yes amplicon-seq effector memory T cells T1D T1D_2 chip0420_867700 PBMC +1357 CAWSDQLGAARELFF TRBV30*01 TRBJ2-2*01 HLA-A*02:01 B2M MHCI YVLDHLIVV BRLF1 EBV PMID:34811538 tetramer-sort yes amplicon-seq effector T cells T1D T1D_2 chip0420_102345 PBMC +1358 CAESTSGGKLIF TRAV5*01 TRAJ23*01 CSVGTGGTNEKLFF TRBV29-1*01 TRBJ1-4*01 HLA-A*02:01 B2M MHCI GLCTLVAML BLMF1 EBV PMID:34811538 tetramer-sort yes amplicon-seq effector memory T cells T1D T1D_2 chip0420_35224 PBMC +1360 CAVKDTDKLIF TRAV8-1*01 TRAJ34*01 CASSLQAANYGYTF TRBV3-1*01 TRBJ1-2*01 HLA-A*02:01 B2M MHCI YVLDHLIVV BRLF1 EBV PMID:34811538 tetramer-sort yes amplicon-seq effector T cells T1D T1D_2 chip0420_183190 PBMC +1361 CSVGSRGTNEKLFF TRBV29-1*01 TRBJ1-4*01 HLA-A*02:01 B2M MHCI GLCTLVAML BLMF1 EBV PMID:34811538 tetramer-sort yes amplicon-seq effector memory T cells T1D T1D_2 chip0420_116228 PBMC +1362 CASPGRGNTEAFF TRBV7-9*01 TRBJ1-1*01 HLA-A*02:01 B2M MHCI KMYAFTLES ZNT8 HomoSapiens PMID:34811538 tetramer-sort yes amplicon-seq Naive T cells T1D T1D_1 chip0420_293528 PBMC +1363 YASSTGQLSNTGELFF TRBV9*01 TRBJ2-2*01 HLA-A*02:01 B2M MHCI GLCTLVAML BLMF1 EBV PMID:34811538 tetramer-sort yes amplicon-seq effector T cells T1D T1D_1 chip0420_271230 PBMC +1364 CSVGTGGTNEKLFF TRBV29-1*01 TRBJ1-4*01 HLA-A*02:01 B2M MHCI GLCTLVAML BLMF1 EBV PMID:34811538 tetramer-sort yes amplicon-seq effector memory T cells T1D T1D_2 chip0420_691444 PBMC +1365 CVVNGGDSSYKLIF TRAV12-1*01 TRAJ12*01 CASSSGQVLPNEQFF TRBV2*01 TRBJ2-1*01 HLA-A*02:01 B2M MHCI GLCTLVAML BLMF1 EBV PMID:34811538 tetramer-sort yes amplicon-seq effector memory T cells T1D T1D_1 chip0420_563244 PBMC +1367 CVVSIGF TRAV12-1*01 TRAJ27*01 HLA-A*02:01 B2M MHCI LLAGIGTVPI PGT HomoSapiens PMID:34811538 tetramer-sort yes amplicon-seq Naive T cells T1D T1D_1 chip0420_27951 PBMC +1369 CASSQSPGGTQYF TRBV14*01 TRBJ2-3*01 HLA-A*02:01 B2M MHCI GLCTLVAML BLMF1 EBV PMID:34811538 tetramer-sort yes amplicon-seq effector memory T cells T1D T1D_1 chip0420_878072 PBMC +1370 CASSIFSGGAYNEQFF TRBV19*01 TRBJ2-1*01 HLA-A*02:01 B2M MHCI GILGFVFTL M1 InfluenzaA PMID:34811538 tetramer-sort yes amplicon-seq transitional T cells between effector and memory populations T1D T1D_1 chip0420_393434 PBMC +1371 CASRMGAGDTQYF TRBV10-2*01 TRBJ2-3*01 HLA-A*02:01 B2M MHCI GLCTLVAML BLMF1 EBV PMID:34811538 tetramer-sort yes amplicon-seq effector memory T cells T1D T1D_2 chip0420_7628 PBMC +1372 CATQQGRDSQPQHF TRBV28*01 TRBJ1-5*01 HLA-A*02:01 B2M MHCI GLCTLVAML BLMF1 EBV PMID:34811538 tetramer-sort yes amplicon-seq effector memory T cells T1D T1D_1 chip0420_799903 PBMC +1373 CAVKDTDKLIF TRAV8-1*01 TRAJ34*01 HLA-A*02:01 B2M MHCI YVLDHLIVV BRLF1 EBV PMID:34811538 tetramer-sort yes amplicon-seq effector memory T cells T1D T1D_2 chip0420_514009 PBMC +1374 CASSPVSGSTYEQYF TRBV3-1*01 TRBJ2-7*01 HLA-A*02:01 B2M MHCI GLCTLVAML BLMF1 EBV PMID:34811538 tetramer-sort yes amplicon-seq effector T cells T1D T1D_1 chip0420_470208 PBMC +1375 CGTEEPNDYKLSF TRAV30*01 TRAJ20*01 CASSTGQLSNTGELFF TRBV9*01 TRBJ2-2*01 HLA-A*02:01 B2M MHCI GLCTLVAML BLMF1 EBV PMID:34811538 tetramer-sort yes amplicon-seq effector memory T cells T1D T1D_1 chip0420_454064 PBMC +1376 CAAYAGNMLTF TRAV29/DV5*01 TRAJ39*01 CASRAGAGDTQYF TRBV10-2*01 TRBJ2-3*01 HLA-A*02:01 B2M MHCI GLCTLVAML BLMF1 EBV PMID:34811538 tetramer-sort yes amplicon-seq effector memory T cells T1D T1D_2 chip0420_463403 PBMC +1378 CAAYAGNLLTF TRAV29/DV5*01 TRAJ39*01 CASRAGAGDTQYF TRBV10-2*01 TRBJ2-3*01 HLA-A*02:01 B2M MHCI GLCTLVAML BLMF1 EBV PMID:34811538 tetramer-sort yes amplicon-seq effector memory T cells T1D T1D_2 chip0420_880780 PBMC +1379 CASSSGLVAPGELFF TRBV2*01 TRBJ2-2*01 HLA-A*02:01 B2M MHCI GLCTLVAML BLMF1 EBV PMID:34811538 tetramer-sort yes amplicon-seq effector T cells T1D T1D_2 chip0420_464890 PBMC +1380 CAMSASNFGNEKLTF TRAV12-3*01 TRAJ48*01 CASSFGREYQETQYF TRBV5-6*01 TRBJ2-5*01 HLA-A*02:01 B2M MHCI LLAGIGTVPI PGT HomoSapiens PMID:34811538 tetramer-sort yes amplicon-seq Naive T cells T1D T1D_1 chip0420_275726 PBMC +1381 CSVGTGGTNEKLFF TRBV29-1*01 TRBJ1-4*01 HLA-A*02:01 B2M MHCI GLCTLVAML BLMF1 EBV PMID:34811538 tetramer-sort yes amplicon-seq effector T cells T1D T1D_2 chip0420_303613 PBMC +1382 CASSDGRVHPGTQYF TRBV2*01 TRBJ2-5*01 HLA-A*02:01 B2M MHCI GLCTLVAML BLMF1 EBV PMID:34811538 tetramer-sort yes amplicon-seq effector T cells T1D T1D_1 chip0420_541995 PBMC +1383 CASSTGQLSNTGELFF TRBV9*01 TRBJ2-2*01 HLA-A*02:01 B2M MHCI GLCTLVAML BLMF1 EBV PMID:34811538 tetramer-sort yes amplicon-seq effector T cells T1D T1D_1 chip0420_364072 PBMC +1384 SARSDGFNTYEQYF TRBV6-1*01 TRBJ2-7*01 HLA-A*02:01 B2M MHCI YVLDHLIVV BRLF1 EBV PMID:34811538 tetramer-sort yes amplicon-seq effector memory T cells T1D T1D_2 chip0420_635789 PBMC +1386 CASSVRGGHNEQFF TRBV9*01 TRBJ2-1*01 HLA-A*02:01 B2M MHCI RLLPLLALLAL INS HomoSapiens PMID:34811538 tetramer-sort yes amplicon-seq Naive T cells T1D T1D_1 chip0420_837445 PBMC +1387 CADKEWgt??ctYRKVAF TRAV5*01 TRAJ13*01 CSVGTGGTNEKLFF TRBV29-1*01 TRBJ1-4*01 HLA-A*02:01 B2M MHCI GLCTLVAML BLMF1 EBV PMID:34811538 tetramer-sort yes amplicon-seq effector T cells T1D T1D_2 chip0420_305465 PBMC +1389 CASSTGQLSNTGELFF TRBV9*01 TRBJ2-2*01 HLA-A*02:01 B2M MHCI GLCTLVAML BLMF1 EBV PMID:34811538 tetramer-sort yes amplicon-seq effector T cells T1D T1D_1 chip0420_279903 PBMC +1390 CASSVRAGETQYF TRBV19*01 TRBJ2-5*01 HLA-A*02:01 B2M MHCI GILGFVFTL M1 InfluenzaA PMID:34811538 tetramer-sort yes amplicon-seq effector memory T cells T1D T1D_1 chip0420_392641 PBMC +1391 CASSPSTSGSGETQYF TRBV3-1*01 TRBJ2-5*01 HLA-A*02:01 B2M MHCI YVLDHLIVV BRLF1 EBV PMID:34811538 tetramer-sort yes amplicon-seq effector memory T cells T1D T1D_2 chip0420_195615 PBMC +1392 CASSQSPGGTQYF TRBV14*01 TRBJ2-3*01 HLA-A*02:01 B2M MHCI GLCTLVAML BLMF1 EBV PMID:34811538 tetramer-sort yes amplicon-seq effector memory T cells T1D T1D_1 chip0420_8392 PBMC +1393 CAAYAGNMLTF TRAV29/DV5*01 TRAJ39*01 CASRAGAGDTQYF TRBV10-2*01 TRBJ2-3*01 HLA-A*02:01 B2M MHCI GLCTLVAML BLMF1 EBV PMID:34811538 tetramer-sort yes amplicon-seq effector T cells T1D T1D_2 chip0420_775449 PBMC +1394 CASRMGAGDTQYF TRBV10-2*01 TRBJ2-3*01 HLA-A*02:01 B2M MHCI GLCTLVAML BLMF1 EBV PMID:34811538 tetramer-sort yes amplicon-seq effector memory T cells T1D T1D_2 chip0420_589453 PBMC +1395 CASSDGRVHPGTQYF TRBV2*01 TRBJ2-5*01 HLA-A*02:01 B2M MHCI GLCTLVAML BLMF1 EBV PMID:34811538 tetramer-sort yes amplicon-seq effector memory T cells T1D T1D_1 chip0420_89484 PBMC +1396 CAVSEP*a?tNNARLMF TRAV8-6*01 TRAJ31*01 CAWSVQLAGVDEQYF TRBV30*01 TRBJ2-7*01 HLA-A*02:01 B2M MHCI YVLDHLIVV BRLF1 EBV PMID:34811538 tetramer-sort yes amplicon-seq effector memory T cells T1D T1D_2 chip0420_762008 PBMC +1397 CAAPRWEKLTF TRAV13-1*01 TRAJ48*01 CSAADQTYNEQFF TRBV20-1*01 TRBJ2-1*01 HLA-A*02:01 B2M MHCI YVLDHLIVV BRLF1 EBV PMID:34811538 tetramer-sort yes amplicon-seq effector T cells T1D T1D_1 chip0420_553118 PBMC +1398 CASSTGQLSNTGELFF TRBV9*01 TRBJ2-2*01 HLA-A*02:01 B2M MHCI GLCTLVAML BLMF1 EBV PMID:34811538 tetramer-sort yes amplicon-seq effector memory T cells T1D T1D_1 chip0420_330050 PBMC +1399 CAVSGGFKTIF TRAV12-2*01 TRAJ9*01 CASMDSNSGNTIYF TRBV2*01 TRBJ1-3*01 HLA-A*02:01 B2M MHCI KLQVFLIVL IAPP HomoSapiens PMID:34811538 tetramer-sort yes amplicon-seq transitional T cells between effector and memory populations T1D T1D_2 chip0420_583225 PBMC +1400 CALYNTDKLIF TRAV9-2*01 TRAJ34*01 CASSPVSGSTYEQYF TRBV3-1*01 TRBJ2-7*01 HLA-A*02:01 B2M MHCI GLCTLVAML BLMF1 EBV PMID:34811538 tetramer-sort yes amplicon-seq effector T cells T1D T1D_1 chip0420_389753 PBMC +1401 CAVSDRDGGFKTIF TRAV8-4*01 TRAJ9*01 CARSINGg?gPEDGYTF TRBV19*01 TRBJ1-2*01 HLA-A*02:01 B2M MHCI GILGFVFTL M1 InfluenzaA PMID:34811538 tetramer-sort yes amplicon-seq transitional T cells between effector and memory populations T1D T1D_1 chip0420_31699 PBMC +1402 CAASRV*KLIF TRAV23/DV6*01 TRAJ4*01 RASTPTRg?aPIYEQYV TRBV4-3*01 TRBJ2-7*01 HLA-A*02:01 B2M MHCI YVLDHLIVV BRLF1 EBV PMID:34811538 tetramer-sort yes amplicon-seq effector memory T cells T1D T1D_2 chip0420_578480 PBMC +1403 CAVKDTDKLIF TRAV8-1*01 TRAJ34*01 CASSHQASEQYF TRBV10-1*01 TRBJ2-7*01 HLA-A*02:01 B2M MHCI YVLDHLIVV BRLF1 EBV PMID:34811538 tetramer-sort yes amplicon-seq effector T cells T1D T1D_2 chip0420_252743 PBMC +1404 CAWSVQLAGVDEQYF TRBV30*01 TRBJ2-7*01 HLA-A*02:01 B2M MHCI YVLDHLIVV BRLF1 EBV PMID:34811538 tetramer-sort yes amplicon-seq transitional T cells between effector and memory populations T1D T1D_2 chip0420_9597 PBMC +1406 CAVKETGKLIF TRAV8-1*01 TRAJ37*01 HLA-A*02:01 B2M MHCI YVLDHLIVV BRLF1 EBV PMID:34811538 tetramer-sort yes amplicon-seq effector memory T cells T1D T1D_2 chip0420_254862 PBMC +1407 CAVRGRRGGLTTTF TRAV8-4*01,TRAV8-6*01 TRAJ9*01 CASSINGGRRDGYTF TRBV19*01 TRBJ1-2*01 HLA-A*02:01 B2M MHCI GILGFVFTL M1 InfluenzaA PMID:34811538 tetramer-sort yes amplicon-seq transitional T cells between effector and memory populations T1D T1D_1 chip0420_346028 PBMC +1408 CASSINGGRRDGYTF TRBV19*01 TRBJ1-2*01 HLA-A*02:01 B2M MHCI GILGFVFTL M1 InfluenzaA PMID:34811538 tetramer-sort yes amplicon-seq transitional T cells between effector and memory populations T1D T1D_1 chip0420_263446 PBMC +1409 CASSSGLVAPGELFF TRBV2*01 TRBJ2-2*01 HLA-A*02:01 B2M MHCI GLCTLVAML BLMF1 EBV PMID:34811538 tetramer-sort yes amplicon-seq effector memory T cells T1D T1D_2 chip0420_194464 PBMC +1410 CASRALLGSNQPQHF TRBV19*01 TRBJ1-5*01 HLA-A*02:01 B2M MHCI YVLDHLIVV BRLF1 EBV PMID:34811538 tetramer-sort yes amplicon-seq effector memory T cells T1D T1D_1 chip0420_793011 PBMC +1411 CASSPVSGSTYEQYF TRBV3-1*01 TRBJ2-7*01 HLA-A*02:01 B2M MHCI GLCTLVAML BLMF1 EBV PMID:34811538 tetramer-sort yes amplicon-seq effector memory T cells T1D T1D_1 chip0420_611003 PBMC +1412 CASRMGAGDTQYF TRBV10-2*01 TRBJ2-3*01 HLA-A*02:01 B2M MHCI GLCTLVAML BLMF1 EBV PMID:34811538 tetramer-sort yes amplicon-seq effector memory T cells T1D T1D_2 chip0420_292651 PBMC +1413 CSVGSRGTNEKLFF TRBV29-1*01 TRBJ1-4*01 HLA-A*02:01 B2M MHCI GLCTLVAML BLMF1 EBV PMID:34811538 tetramer-sort yes amplicon-seq effector memory T cells T1D T1D_1 chip0420_802503 PBMC +1414 CSVGTGGTNEKLFF TRBV29-1*01 TRBJ1-4*01 HLA-A*02:01 B2M MHCI GLCTLVAML BLMF1 EBV PMID:34811538 tetramer-sort yes amplicon-seq effector T cells T1D T1D_2 chip0420_564594 PBMC +1415 CSVDQRTGQKKNYGYTF TRBV29-1*01 TRBJ1-2*01 HLA-A*02:01 B2M MHCI GLCTLVAML BLMF1 EBV PMID:34811538 tetramer-sort yes amplicon-seq effector T cells T1D T1D_2 chip0420_578994 PBMC +1416 CSVGTGGTNEKLFF TRBV29-1*01 TRBJ1-4*01 HLA-A*02:01 B2M MHCI GLCTLVAML BLMF1 EBV PMID:34811538 tetramer-sort yes amplicon-seq effector memory T cells T1D T1D_2 chip0420_731207 PBMC +1417 CSVGTGGTNEKLFF TRBV29-1*01 TRBJ1-4*01 HLA-A*02:01 B2M MHCI GLCTLVAML BLMF1 EBV PMID:34811538 tetramer-sort yes amplicon-seq effector T cells T1D T1D_2 chip0420_469356 PBMC +1418 CASSYMSGEAFF TRAV9-1*01 TRAJ40*01 CASSYMSGEAFF TRBV6-2*01,TRBV6-3*01 TRBJ1-1*01 HLA-A*02:01 B2M MHCI YVLDHLIVV BRLF1 EBV PMID:34811538 tetramer-sort yes amplicon-seq effector memory T cells T1D T1D_2 chip0420_120197 PBMC +1419 CASSVQGGNYGYTS TRBV6-1*01 TRBJ1-2*01 HLA-A*02:01 B2M MHCI FLYALALLL LMP2 EBV PMID:34811538 tetramer-sort yes amplicon-seq effector memory T cells T1D T1D_1 chip0420_676417 PBMC +1420 CVVNPFag??gaYSTLTF TRAV12-1*01 TRAJ11*01 HLA-A*02:01 B2M MHCI YVLDHLIVV BRLF1 EBV PMID:34811538 tetramer-sort yes amplicon-seq effector T cells T1D T1D_2 chip0420_583388 PBMC +1421 CAMRESRDSNYQLIW TRAV14/DV4*01 TRAJ33*01 CASSVEPSLLHQPQHF TRBV9*01 TRBJ1-5*01 HLA-A*02:01 B2M MHCI GLCTLVAML BLMF1 EBV PMID:34811538 tetramer-sort yes amplicon-seq effector memory T cells T1D T1D_2 chip0420_331362 PBMC +1422 CALGDTDKLIF TRAV8-1*01 TRAJ34*01 CASRPLLGRNQPQHF TRBV6-1*01 TRBJ1-5*01 HLA-A*02:01 B2M MHCI YVLDHLIVV BRLF1 EBV PMID:34811538 tetramer-sort yes amplicon-seq effector T cells T1D T1D_2 chip0420_161225 PBMC +1423 CSVGSRGTNEKLFF TRBV29-1*01 TRBJ1-4*01 HLA-A*02:01 B2M MHCI GLCTLVAML BLMF1 EBV PMID:34811538 tetramer-sort yes amplicon-seq effector memory T cells T1D T1D_1 chip0420_467885 PBMC +1424 CATQQGRDSQPQHF TRBV28*01 TRBJ1-5*01 HLA-A*02:01 B2M MHCI GLCTLVAML BLMF1 EBV PMID:34811538 tetramer-sort yes amplicon-seq effector memory T cells T1D T1D_1 chip0420_195404 PBMC +1425 CATFPGGSYEQYF TRBV28*01 TRBJ2-7*01 HLA-A*02:01 B2M MHCI YLLEMLWRL LMP1 EBV PMID:34811538 tetramer-sort yes amplicon-seq central memory T cells T1D T1D_1 chip0420_753466 PBMC +1426 CSIGSRGTNEKLFF TRBV29-1*01 TRBJ1-4*01 HLA-A*02:01 B2M MHCI GLCTLVAML BLMF1 EBV PMID:34811538 tetramer-sort yes amplicon-seq effector memory T cells T1D T1D_1 chip0420_424463 PBMC +1427 CSVGTGGTNEKLFF TRBV29-1*01 TRBJ1-4*01 HLA-A*02:01 B2M MHCI GLCTLVAML BLMF1 EBV PMID:34811538 tetramer-sort yes amplicon-seq effector T cells T1D T1D_2 chip0420_168823 PBMC +1429 CSVDQRTGQKKNYGYTF TRBV29-1*01 TRBJ1-2*01 HLA-A*02:01 B2M MHCI GLCTLVAML BLMF1 EBV PMID:34811538 tetramer-sort yes amplicon-seq effector memory T cells T1D T1D_2 chip0420_804754 PBMC +1430 YASSTGQLSNTGELFF TRBV9*01 TRBJ2-2*01 HLA-A*02:01 B2M MHCI GLCTLVAML BLMF1 EBV PMID:34811538 tetramer-sort yes amplicon-seq effector memory T cells T1D T1D_1 chip0420_785976 PBMC +1432 CSVGSRGTNEKLFF TRBV29-1*01 TRBJ1-4*01 HLA-A*02:01 B2M MHCI GLCTLVAML BLMF1 EBV PMID:34811538 tetramer-sort yes amplicon-seq effector memory T cells T1D T1D_1 chip0420_454975 PBMC +1433 CASSYMSGEAFF TRBV6-2*01,TRBV6-3*01 TRBJ1-1*01 HLA-A*02:01 B2M MHCI YVLDHLIVV BRLF1 EBV PMID:34811538 tetramer-sort yes amplicon-seq effector memory T cells T1D T1D_2 chip0420_239958 PBMC +1435 CASRLGGa?tCHQPQHF TRBV5-1*01 TRBJ1-5*01 HLA-A*02:01 B2M MHCI GILGFVFTL M1 InfluenzaA PMID:34811538 tetramer-sort yes amplicon-seq transitional T cells between effector and memory populations T1D T1D_1 chip0420_770210 PBMC +1437 CATGEGFIF TRAV17*01 TRAJ48*01 CASAIYGELFF TRBV7-9*01 TRBJ2-2*01 HLA-A*02:01 B2M MHCI GIIYIIYKL P3A CoxsackievirusB PMID:34811538 tetramer-sort yes amplicon-seq Naive T cells T1D T1D_1 chip0420_701357 PBMC +1438 CVVNGRDSSYKLIF TRAV12-1*01 TRAJ12*01 CASSSGLVAPGELFF TRBV2*01 TRBJ2-2*01 HLA-A*02:01 B2M MHCI GLCTLVAML BLMF1 EBV PMID:34811538 tetramer-sort yes amplicon-seq effector memory T cells T1D T1D_2 chip0420_180430 PBMC +1439 CSVDQRTGQKKNYGYTF TRBV29-1*01 TRBJ1-2*01 HLA-A*02:01 B2M MHCI GLCTLVAML BLMF1 EBV PMID:34811538 tetramer-sort yes amplicon-seq effector T cells T1D T1D_2 chip0420_22935 PBMC +1440 CASRMGAGDTQYF TRBV10-2*01 TRBJ2-3*01 HLA-A*02:01 B2M MHCI GLCTLVAML BLMF1 EBV PMID:34811538 tetramer-sort yes amplicon-seq effector memory T cells T1D T1D_2 chip0420_857738 PBMC +1441 CALMDGANSKLTF TRAV16*01 TRAJ56*01 CAAQQGRASQPPHF TRBV28*01 TRBJ1-5*01 HLA-A*02:01 B2M MHCI GLCTLVAML BLMF1 EBV PMID:34811538 tetramer-sort yes amplicon-seq effector T cells T1D T1D_1 chip0420_372547 PBMC +1442 CASSPSTSGSGETQYF TRBV3-1*01 TRBJ2-5*01 HLA-A*02:01 B2M MHCI YVLDHLIVV BRLF1 EBV PMID:34811538 tetramer-sort yes amplicon-seq effector memory T cells T1D T1D_2 chip0420_339617 PBMC +1444 CASSSGLVAPGELFF TRBV2*01 TRBJ2-2*01 HLA-A*02:01 B2M MHCI GLCTLVAML BLMF1 EBV PMID:34811538 tetramer-sort yes amplicon-seq effector memory T cells T1D T1D_2 chip0420_54864 PBMC +1445 FASLTPGASKVSF TRAV8-6*01 TRAJ3*01 CASSSGLVAPGELFF TRBV2*01 TRBJ2-2*01 HLA-A*02:01 B2M MHCI GLCTLVAML BLMF1 EBV PMID:34811538 tetramer-sort yes amplicon-seq effector memory T cells T1D T1D_2 chip0420_807453 PBMC +1446 CASRMGAGDTQYF TRBV10-2*01 TRBJ2-3*01 HLA-A*02:01 B2M MHCI GLCTLVAML BLMF1 EBV PMID:34811538 tetramer-sort yes amplicon-seq transitional T cells between effector and memory populations T1D T1D_2 chip0420_786217 PBMC +1448 CASSINGGRRDGYTF TRBV19*01 TRBJ1-2*01 HLA-A*02:01 B2M MHCI GILGFVFTL M1 InfluenzaA PMID:34811538 tetramer-sort yes amplicon-seq transitional T cells between effector and memory populations T1D T1D_1 chip0420_157633 PBMC +1451 CASSFPLAVQDDEQFF TRBV28*01 TRBJ2-1*01 HLA-A*02:01 B2M MHCI LLAGIGTVPI PGT HomoSapiens PMID:34811538 tetramer-sort yes amplicon-seq Naive T cells T1D T1D_1 chip0420_343351 PBMC +1452 CASCQGRGQAPYNEQFF TRBV3-1*01 TRBJ2-1*01 HLA-A*02:01 B2M MHCI LLAGIGTVPI PGT HomoSapiens PMID:34811538 tetramer-sort yes amplicon-seq Naive T cells T1D T1D_1 chip0420_140106 PBMC +1453 CAVSPSGGYQKVTF TRAV3*01 TRAJ13*01 HLA-A*02:01 B2M MHCI AIIRILQQL VPR HIV-1 PMID:34811538 tetramer-sort yes amplicon-seq Naive T cells T1D T1D_1 chip0420_854584 PBMC +1454 CGTEEPNDYKLSF TRAV30*01 TRAJ20*01 CASSTGQLSNTGELFF TRBV9*01 TRBJ2-2*01 HLA-A*02:01 B2M MHCI GLCTLVAML BLMF1 EBV PMID:34811538 tetramer-sort yes amplicon-seq effector memory T cells T1D T1D_1 chip0420_602158 PBMC +1456 CASSSGQVLPNEQFF TRBV2*01 TRBJ2-1*01 HLA-A*02:01 B2M MHCI GLCTLVAML BLMF1 EBV PMID:34811538 tetramer-sort yes amplicon-seq effector memory T cells T1D T1D_1 chip0420_78213 PBMC +1457 CSVGGTFYGYTF TRBV29-1*01 TRBJ1-2*01 HLA-A*02:01 B2M MHCI GLCTLVAML BLMF1 EBV PMID:34811538 tetramer-sort yes amplicon-seq transitional T cells between effector and memory populations T1D T1D_2 chip0420_327415 PBMC +1459 CASSQSPGGTQYF TRBV14*01 TRBJ2-3*01 HLA-A*02:01 B2M MHCI GLCTLVAML BLMF1 EBV PMID:34811538 tetramer-sort yes amplicon-seq effector T cells T1D T1D_1 chip0420_247073 PBMC +1461 CASSSGQVLPNEQFF TRBV2*01 TRBJ2-1*01 HLA-A*02:01 B2M MHCI GLCTLVAML BLMF1 EBV PMID:34811538 tetramer-sort yes amplicon-seq effector memory T cells T1D T1D_1 chip0420_851107 PBMC +1462 CATNNAGNMLTF TRAV17*01 TRAJ39*01 CASSKWGDEKLFF TRBV13*01 TRBJ1-4*01 HLA-A*02:01 B2M MHCI LVGPTPVNI POL HIV-1 PMID:34811538 tetramer-sort yes amplicon-seq Naive T cells T1D T1D_1 chip0420_816453 PBMC +1463 CASTDTLSLINTGELFF TRBV28*01 TRBJ2-2*01 HLA-A*02:01 B2M MHCI YVLDHLIVV BRLF1 EBV PMID:34811538 tetramer-sort yes amplicon-seq effector memory T cells T1D T1D_2 chip0420_814665 PBMC +1464 CSVGGSFYGYTF TRBV29-1*01 TRBJ1-2*01 HLA-A*02:01 B2M MHCI GLCTLVAML BLMF1 EBV PMID:34811538 tetramer-sort yes amplicon-seq effector memory T cells T1D T1D_2 chip0420_409070 PBMC +1465 CASSPSTSGSGETQYF TRBV3-1*01 TRBJ2-5*01 HLA-A*02:01 B2M MHCI YVLDHLIVV BRLF1 EBV PMID:34811538 tetramer-sort yes amplicon-seq effector T cells T1D T1D_2 chip0420_426064 PBMC +1466 CSVGSRGTNEKLFF TRBV29-1*01 TRBJ1-4*01 HLA-A*02:01 B2M MHCI GLCTLVAML BLMF1 EBV PMID:34811538 tetramer-sort yes amplicon-seq effector memory T cells T1D T1D_1 chip0420_399077 PBMC +1467 CSVGSRGTNEKLFF TRBV29-1*01 TRBJ1-4*01 HLA-A*02:01 B2M MHCI GLCTLVAML BLMF1 EBV PMID:34811538 tetramer-sort yes amplicon-seq effector memory T cells T1D T1D_1 chip0420_823294 PBMC +1468 CGPEEPNDYKLSF TRAV30*01 TRAJ20*01 CASSTGQLSNTGELFF TRBV9*01 TRBJ2-2*01 HLA-A*02:01 B2M MHCI GLCTLVAML BLMF1 EBV PMID:34811538 tetramer-sort yes amplicon-seq effector T cells T1D T1D_1 chip0420_525997 PBMC +1469 CAVSEP*a?tNNARLMF TRAV8-6*01 TRAJ31*01 CAWCVQLAGVDEQYF TRBV30*01 TRBJ2-7*01 HLA-A*02:01 B2M MHCI YVLDHLIVV BRLF1 EBV PMID:34811538 tetramer-sort yes amplicon-seq effector T cells T1D T1D_2 chip0420_621251 PBMC +1470 CAMSADGGSQGNLIF TRAV12-3*01 TRAJ42*01 HLA-A*02:01 B2M MHCI GILGFVFTL M1 InfluenzaA PMID:34811538 tetramer-sort yes amplicon-seq transitional T cells between effector and memory populations T1D T1D_1 chip0420_542361 PBMC +1472 CASSLYYNEQFF TRBV12-3*01,TRBV12-4*01 TRBJ2-1*01 HLA-A*02:01 B2M MHCI YLLEMLWRL LMP1 EBV PMID:34811538 tetramer-sort yes amplicon-seq central memory T cells T1D T1D_2 chip0420_288285 PBMC +1473 CVVNGRDSSYTLLF TRAV12-1*01 TRAJ12*01 CASSSGLVAPGELFF TRBV2*01 TRBJ2-2*01 HLA-A*02:01 B2M MHCI GLCTLVAML BLMF1 EBV PMID:34811538 tetramer-sort yes amplicon-seq effector memory T cells T1D T1D_2 chip0420_426119 PBMC +1474 CAVSDRDGGFKTIF TRAV8-4*01 TRAJ9*01 CASSINGGRRDGYTF TRBV19*01 TRBJ1-2*01 HLA-A*02:01 B2M MHCI GILGFVFTL M1 InfluenzaA PMID:34811538 tetramer-sort yes amplicon-seq transitional T cells between effector and memory populations T1D T1D_1 chip0420_10335 PBMC +1475 CASSESFQANTEAFF TRBV10-2*01 TRBJ1-1*01 HLA-A*02:01 B2M MHCI LLAGIGTVPI PGT HomoSapiens PMID:34811538 tetramer-sort yes amplicon-seq effector memory T cells tet_neg chip0420_450991 PBMC +1476 CAVKETGKLIF TRAV8-1*01 TRAJ37*01 CASTSGSGFEQYF TRBV7-9*01 TRBJ2-7*01 HLA-A*02:01 B2M MHCI YVLDHLIVV BRLF1 EBV PMID:34811538 tetramer-sort yes amplicon-seq effector T cells T1D T1D_2 chip0420_78423 PBMC +1477 CGPEEPNDYKLSF TRAV30*01 TRAJ20*01 HLA-A*02:01 B2M MHCI GLCTLVAML BLMF1 EBV PMID:34811538 tetramer-sort yes amplicon-seq effector T cells T1D T1D_1 chip0420_9395 PBMC +1478 CASLTPGASKIIF TRAV8-6*01 TRAJ3*01 CASSSGLVAPGELFF TRBV2*01 TRBJ2-2*01 HLA-A*02:01 B2M MHCI GLCTLVAML BLMF1 EBV PMID:34811538 tetramer-sort yes amplicon-seq effector memory T cells T1D T1D_2 chip0420_819174 PBMC +1479 CAAYAGNMLTF TRAV29/DV5*01 TRAJ39*01 CASRAGAGDTQYF TRBV10-2*01 TRBJ2-3*01 HLA-A*02:01 B2M MHCI GLCTLVAML BLMF1 EBV PMID:34811538 tetramer-sort yes amplicon-seq effector memory T cells T1D T1D_2 chip0420_734057 PBMC +1480 CSVGTGGTNEKLFF TRBV29-1*01 TRBJ1-4*01 HLA-A*02:01 B2M MHCI GLCTLVAML BLMF1 EBV PMID:34811538 tetramer-sort yes amplicon-seq effector memory T cells T1D T1D_2 chip0420_640370 PBMC +1481 CGTEEPNDYKLSF TRAV30*01 TRAJ20*01 HLA-A*02:01 B2M MHCI GLCTLVAML BLMF1 EBV PMID:34811538 tetramer-sort yes amplicon-seq effector T cells T1D T1D_1 chip0420_545133 PBMC +1482 CGPEEPNDYKLSF TRAV30*01 TRAJ20*01 HLA-A*02:01 B2M MHCI GLCTLVAML BLMF1 EBV PMID:34811538 tetramer-sort yes amplicon-seq effector T cells T1D T1D_1 chip0420_514574 PBMC +1483 CVVNGRDSSYKLIF TRAV12-1*01 TRAJ12*01 CASSSGLVAPGELFF TRBV2*01 TRBJ2-2*01 HLA-A*02:01 B2M MHCI GLCTLVAML BLMF1 EBV PMID:34811538 tetramer-sort yes amplicon-seq effector memory T cells T1D T1D_2 chip0420_459185 PBMC +1484 CSVGSRGTNEKPFF TRBV29-1*01 TRBJ1-4*01 HLA-A*02:01 B2M MHCI GLCTLVAML BLMF1 EBV PMID:34811538 tetramer-sort yes amplicon-seq effector memory T cells T1D T1D_1 chip0420_227467 PBMC +1485 CAFMKGAGGTSYGTLTF TRAV38-1*01 TRAJ52*01 CASSFGSYGYTF TRBV19*01 TRBJ1-2*01 HLA-A*02:01 B2M MHCI GILGFVFTL M1 InfluenzaA PMID:34811538 tetramer-sort yes amplicon-seq transitional T cells between effector and memory populations T1D T1D_1 chip0420_63602 PBMC +1486 CASSEGFNTYEQYF TRBV6-1*01 TRBJ2-7*01 HLA-A*02:01 B2M MHCI YVLDHLIVV BRLF1 EBV PMID:34811538 tetramer-sort yes amplicon-seq effector memory T cells T1D T1D_2 chip0420_868992 PBMC +1487 CAISASGNYGYTF TRBV10-3*01 TRBJ1-2*01 HLA-A*02:01 B2M MHCI LLAGIGTVPI PGT HomoSapiens PMID:34811538 tetramer-sort yes amplicon-seq Naive T cells T1D T1D_2 chip0420_252180 PBMC +1488 CASTDTLSLINTGELFF TRBV28*01 TRBJ2-2*01 HLA-A*02:01 B2M MHCI YVLDHLIVV BRLF1 EBV PMID:34811538 tetramer-sort yes amplicon-seq effector T cells T1D T1D_2 chip0420_708018 PBMC +1489 CASSSGQVLPNEQFF TRBV2*01 TRBJ2-1*01 HLA-A*02:01 B2M MHCI GLCTLVAML BLMF1 EBV PMID:34811538 tetramer-sort yes amplicon-seq effector memory T cells T1D T1D_1 chip0420_118572 PBMC +1490 CAESTSGGKLIF TRAV5*01 TRAJ23*01 CSVGTGGTNEKLFF TRBV29-1*01 TRBJ1-4*01 HLA-A*02:01 B2M MHCI GLCTLVAML BLMF1 EBV PMID:34811538 tetramer-sort yes amplicon-seq effector T cells T1D T1D_2 chip0420_790604 PBMC +1491 CAASLNLg?cNTGLLVF TRAV25*01 TRAJ37*01 CASSESRAEANYGYTF TRBV25-1*01 TRBJ1-2*01 HLA-A*02:01 B2M MHCI LLAGIGTVPI PGT HomoSapiens PMID:34811538 tetramer-sort yes amplicon-seq Naive T cells T1D T1D_2 chip0420_773571 PBMC +1493 CAAYAGNMLTF TRAV29/DV5*01 TRAJ39*01 HLA-A*02:01 B2M MHCI GLCTLVAML BLMF1 EBV PMID:34811538 tetramer-sort yes amplicon-seq effector memory T cells T1D T1D_2 chip0420_696771 PBMC +1494 CASSQGLANVLTF TRBV3-1*01 TRBJ2-6*01 HLA-A*02:01 B2M MHCI YVLDHLIVV BRLF1 EBV PMID:34811538 tetramer-sort yes amplicon-seq effector T cells T1D T1D_1 chip0420_153643 PBMC +1495 CASSLGSPSSGSSYNEQFF TRBV13*01 TRBJ2-1*01 HLA-A*02:01 B2M MHCI LLAGIGTVPI PGT HomoSapiens PMID:34811538 tetramer-sort yes amplicon-seq Naive T cells T1D T1D_1 chip0420_675645 PBMC +1496 CASSPDQTSSYNEQFF TRBV27*01 TRBJ2-1*01 HLA-A*02:01 B2M MHCI YVLDHLIVV BRLF1 EBV PMID:34811538 tetramer-sort yes amplicon-seq effector memory T cells T1D T1D_2 chip0420_560257 PBMC +1497 CSVGTGGTNEKLFF TRBV29-1*01 TRBJ1-4*01 HLA-A*02:01 B2M MHCI GLCTLVAML BLMF1 EBV PMID:34811538 tetramer-sort yes amplicon-seq effector T cells T1D T1D_2 chip0420_638311 PBMC +1498 CSVGSRGTNEKLFF TRBV29-1*01 TRBJ1-4*01 HLA-A*02:01 B2M MHCI GLCTLVAML BLMF1 EBV PMID:34811538 tetramer-sort yes amplicon-seq effector memory T cells T1D T1D_1 chip0420_303882 PBMC +1499 CASSEVFLDEQFF TRBV6-1*01 TRBJ2-1*01 HLA-A*02:01 B2M MHCI YVLDHLIVV BRLF1 EBV PMID:34811538 tetramer-sort yes amplicon-seq effector memory T cells T1D T1D_2 chip0420_778129 PBMC +1500 CASSQSRGSLWDTQYF TRBV4-3*01 TRBJ2-3*01 HLA-A*02:01 B2M MHCI YVLDHLIVV BRLF1 EBV PMID:34811538 tetramer-sort yes amplicon-seq effector T cells T1D T1D_2 chip0420_562014 PBMC +1501 CAVNGGNKLVF TRAV12-2*01 TRAJ47*01 HLA-A*02:01 B2M MHCI ALAGIGILTV MART1 HomoSapiens PMID:34811538 tetramer-sort yes amplicon-seq central memory T cells T1D T1D_2 chip0420_479926 PBMC +1502 CSVGGELFF TRBV29-1*01 TRBJ2-2*01 HLA-A*02:01 B2M MHCI LLAGIGTVPI PGT HomoSapiens PMID:34811538 tetramer-sort yes amplicon-seq Naive T cells T1D T1D_2 chip0420_176976 PBMC +1504 CAESTSGGKLIF TRAV5*01 TRAJ23*01 CSVGTGGTNEKLFF TRBV29-1*01 TRBJ1-4*01 HLA-A*02:01 B2M MHCI GLCTLVAML BLMF1 EBV PMID:34811538 tetramer-sort yes amplicon-seq effector memory T cells T1D T1D_2 chip0420_843276 PBMC +1505 CASSFLAGVNEQFF TRBV28*01 TRBJ2-1*01 HLA-A*02:01 B2M MHCI LLAGIGTVPI PGT HomoSapiens PMID:34811538 tetramer-sort yes amplicon-seq transitional T cells between effector and memory populations T1D T1D_1 chip0420_502578 PBMC +1506 CASTHRASEQYF TRBV10-1*01 TRBJ2-7*01 HLA-A*02:01 B2M MHCI YVLDHLIVV BRLF1 EBV PMID:34811538 tetramer-sort yes amplicon-seq effector T cells T1D T1D_2 chip0420_165269 PBMC +1507 CSVGTGGTNEKLFF TRBV29-1*01 TRBJ1-4*01 HLA-A*02:01 B2M MHCI GLCTLVAML BLMF1 EBV PMID:34811538 tetramer-sort yes amplicon-seq effector memory T cells T1D T1D_2 chip0420_353314 PBMC +1508 CGTAEPNDYKLSF TRAV30*01 TRAJ20*01 CASSTGQLSNTGELFF TRBV9*01 TRBJ2-2*01 HLA-A*02:01 B2M MHCI GLCTLVAML BLMF1 EBV PMID:34811538 tetramer-sort yes amplicon-seq effector T cells T1D T1D_1 chip0420_424334 PBMC +1510 CASSLFSSEQFF TRBV28*01 TRBJ2-1*01 HLA-A*02:01 B2M MHCI YVLDHLIVV BRLF1 EBV PMID:34811538 tetramer-sort yes amplicon-seq effector memory T cells T1D T1D_1 chip0420_247492 PBMC +1511 CSVGSRGTNEKLFF TRBV29-1*01 TRBJ1-4*01 HLA-A*02:01 B2M MHCI GLCTLVAML BLMF1 EBV PMID:34811538 tetramer-sort yes amplicon-seq effector memory T cells T1D T1D_1 chip0420_155594 PBMC +1513 CASRMGAGDTQYF TRBV10-2*01 TRBJ2-3*01 HLA-A*02:01 B2M MHCI GLCTLVAML BLMF1 EBV PMID:34811538 tetramer-sort yes amplicon-seq effector memory T cells T1D T1D_2 chip0420_606419 PBMC +1514 CASNPVSGSTYEQYF TRBV3-1*01 TRBJ2-7*01 HLA-A*02:01 B2M MHCI GLCTLVAML BLMF1 EBV PMID:34811538 tetramer-sort yes amplicon-seq effector memory T cells T1D T1D_1 chip0420_533016 PBMC +1515 CAVMDNASGTYKYIF TRAV12-2*01 TRAJ40*01 CSVWSSGTYEQYF TRBV29-1*01 TRBJ2-7*01 HLA-A*02:01 B2M MHCI RLLPLLALL PREINS HomoSapiens PMID:34811538 tetramer-sort yes amplicon-seq Naive T cells T1D T1D_2 chip0420_510318 PBMC +1516 CASSTEQLSNTGELFF TRBV9*01 TRBJ2-2*01 HLA-A*02:01 B2M MHCI GLCTLVAML BLMF1 EBV PMID:34811538 tetramer-sort yes amplicon-seq effector T cells T1D T1D_1 chip0420_193256 PBMC +1517 CAAYAGNMLTF TRAV29/DV5*01 TRAJ39*01 CASRAGAGDTQYF TRBV10-2*01 TRBJ2-3*01 HLA-A*02:01 B2M MHCI GLCTLVAML BLMF1 EBV PMID:34811538 tetramer-sort yes amplicon-seq effector memory T cells T1D T1D_2 chip0420_71762 PBMC +1518 CAESTSGGKLIF TRAV5*01 TRAJ23*01 CSVGTGGTNEKLFF TRBV29-1*01 TRBJ1-4*01 HLA-A*02:01 B2M MHCI GLCTLVAML BLMF1 EBV PMID:34811538 tetramer-sort yes amplicon-seq effector T cells T1D T1D_2 chip0420_859114 PBMC +1519 CASSIIDRTLGTDTQYF TRBV19*01 TRBJ2-3*01 HLA-A*02:01 B2M MHCI GILGFVFTL M1 InfluenzaA PMID:34811538 tetramer-sort yes amplicon-seq transitional T cells between effector and memory populations T1D T1D_1 chip0420_676189 PBMC +1520 CASSPDQTSSYNEQFF TRBV27*01 TRBJ2-1*01 HLA-A*02:01 B2M MHCI YVLDHLIVV BRLF1 EBV PMID:34811538 tetramer-sort yes amplicon-seq effector memory T cells T1D T1D_1 chip0420_816934 PBMC +1521 CSVGTGGTNEKLFF TRBV29-1*01 TRBJ1-4*01 HLA-A*02:01 B2M MHCI GLCTLVAML BLMF1 EBV PMID:34811538 tetramer-sort yes amplicon-seq effector T cells T1D T1D_2 chip0420_417667 PBMC +1523 CAVKDTDKLIF TRAV8-1*01 TRAJ34*01 CAISEGTLSSYNEQFF TRBV10-3*01 TRBJ2-1*01 HLA-A*02:01 B2M MHCI YVLDHLIVV BRLF1 EBV PMID:34811538 tetramer-sort yes amplicon-seq effector T cells T1D T1D_1 chip0420_57494 PBMC +1524 CSVGTGGTNEKLFF TRBV29-1*01 TRBJ1-4*01 HLA-A*02:01 B2M MHCI GLCTLVAML BLMF1 EBV PMID:34811538 tetramer-sort yes amplicon-seq effector memory T cells T1D T1D_2 chip0420_686622 PBMC +1526 CSVDQRTGQKKNYGYTF TRBV29-1*01 TRBJ1-2*01 HLA-A*02:01 B2M MHCI GLCTLVAML BLMF1 EBV PMID:34811538 tetramer-sort yes amplicon-seq effector memory T cells T1D T1D_2 chip0420_216211 PBMC +1527 CAAYAGNMLPF TRAV29/DV5*01 TRAJ39*01 CASRMGAGDTQYF TRBV10-2*01 TRBJ2-3*01 HLA-A*02:01 B2M MHCI GLCTLVAML BLMF1 EBV PMID:34811538 tetramer-sort yes amplicon-seq transitional T cells between effector and memory populations T1D T1D_2 chip0420_87444 PBMC +1528 CASSLEGQASSYEQYF TRBV5-1*01 TRBJ2-7*01 HLA-A*02:01 B2M MHCI CLGGLLTMV LMP2A EBV PMID:34811538 tetramer-sort yes amplicon-seq central memory T cells T1D T1D_2 chip0420_692204 PBMC +1529 CALGGLTF TRAV8-1*01 TRAJ22*01 CASSPSTSGSGETQYF TRBV3-1*01 TRBJ2-5*01 HLA-A*02:01 B2M MHCI YVLDHLIVV BRLF1 EBV PMID:34811538 tetramer-sort yes amplicon-seq effector memory T cells T1D T1D_2 chip0420_472328 PBMC +1530 CAWSVQLAGVDEQYF TRBV30*01 TRBJ2-7*01 HLA-A*02:01 B2M MHCI YVLDHLIVV BRLF1 EBV PMID:34811538 tetramer-sort yes amplicon-seq transitional T cells between effector and memory populations T1D T1D_2 chip0420_126405 PBMC +1532 CASSVRARETQYF TRBV19*01 TRBJ2-5*01 HLA-A*02:01 B2M MHCI GILGFVFTL M1 InfluenzaA PMID:34811538 tetramer-sort yes amplicon-seq transitional T cells between effector and memory populations T1D T1D_1 chip0420_607054 PBMC +1533 CILRRYGGSQGNLIF TRAV26-2*01 TRAJ42*01 CASSPVSGSTYEQYF TRBV3-1*01 TRBJ2-7*01 HLA-A*02:01 B2M MHCI GLCTLVAML BLMF1 EBV PMID:34811538 tetramer-sort yes amplicon-seq effector memory T cells T1D T1D_1 chip0420_149351 PBMC +1534 CASSTGQLSNTGELFF TRBV9*01 TRBJ2-2*01 HLA-A*02:01 B2M MHCI GLCTLVAML BLMF1 EBV PMID:34811538 tetramer-sort yes amplicon-seq effector memory T cells T1D T1D_1 chip0420_819196 PBMC +1535 CASSLFPTALRSYEQYF TRBV7-8*01 TRBJ2-7*01 HLA-A*02:01 B2M MHCI LVGPTPVNI POL HIV-1 PMID:34811538 tetramer-sort yes amplicon-seq Naive T cells T1D T1D_1 chip0420_330449 PBMC +1536 CASSLAEGLTTSTDTQYF TRBV5-1*01 TRBJ2-3*01 HLA-A*02:01 B2M MHCI GLCTLVAML BLMF1 EBV PMID:34811538 tetramer-sort yes amplicon-seq effector T cells T1D T1D_2 chip0420_26831 PBMC +1537 CALYNTDKLIF TRAV9-2*01 TRAJ34*01 CASSPVSGSTYEQYF TRBV3-1*01 TRBJ2-7*01 HLA-A*02:01 B2M MHCI GLCTLVAML BLMF1 EBV PMID:34811538 tetramer-sort yes amplicon-seq effector T cells T1D T1D_1 chip0420_773043 PBMC +1538 CSAADQTYNEQFF TRBV20-1*01 TRBJ2-1*01 HLA-A*02:01 B2M MHCI YVLDHLIVV BRLF1 EBV PMID:34811538 tetramer-sort yes amplicon-seq effector memory T cells T1D T1D_1 chip0420_398436 PBMC +1539 CASRAGAGDTQYF TRAV9-1*01 TRAJ40*01 CASRAGAGDTQYF TRBV10-2*01 TRBJ2-3*01 HLA-A*02:01 B2M MHCI GLCTLVAML BLMF1 EBV PMID:34811538 tetramer-sort yes amplicon-seq effector memory T cells T1D T1D_2 chip0420_101784 PBMC +1540 CASTPDINTEAFF TRBV6-1*01 TRBJ1-1*01 HLA-A*02:01 B2M MHCI GLCTLVAML BLMF1 EBV PMID:34811538 tetramer-sort yes amplicon-seq effector memory T cells T1D T1D_2 chip0420_724607 PBMC +1541 CASTNQGEETQYF TRBV6-2*01,TRBV6-3*01 TRBJ2-5*01 HLA-A*02:01 B2M MHCI YVLDHLIVV BRLF1 EBV PMID:34811538 tetramer-sort yes amplicon-seq effector memory T cells T1D T1D_2 chip0420_510274 PBMC +1543 CAMREGTGNFNKFYF TRAV14/DV4*01 TRAJ21*01 CASKGIDGYTF TRBV13*01 TRBJ1-2*01 HLA-A*02:01 B2M MHCI YVLDHLIVV BRLF1 EBV PMID:34811538 tetramer-sort yes amplicon-seq effector memory T cells T1D T1D_2 chip0420_181813 PBMC +1545 CGTEEPNDYKLSF TRAV30*01 TRAJ20*01 HLA-A*02:01 B2M MHCI GLCTLVAML BLMF1 EBV PMID:34811538 tetramer-sort yes amplicon-seq effector T cells T1D T1D_1 chip0420_842014 PBMC +1546 CSVGTGGTNEKLFF TRBV29-1*01 TRBJ1-4*01 HLA-A*02:01 B2M MHCI GLCTLVAML BLMF1 EBV PMID:34811538 tetramer-sort yes amplicon-seq effector memory T cells T1D T1D_2 chip0420_79631 PBMC +1547 CASRALLGSNQPQHF TRBV19*01 TRBJ1-5*01 HLA-A*02:01 B2M MHCI YVLDHLIVV BRLF1 EBV PMID:34811538 tetramer-sort yes amplicon-seq effector T cells T1D T1D_2 chip0420_372853 PBMC +1549 CASSQDYRGTFF TRBV3-1*01 TRBJ1-1*01 HLA-A*02:01 B2M MHCI LVGPTPVNI POL HIV-1 PMID:34811538 tetramer-sort yes amplicon-seq Naive T cells T1D T1D_1 chip0420_376482 PBMC +1550 CSVGTGGTNEKLFF TRBV29-1*01 TRBJ1-4*01 HLA-A*02:01 B2M MHCI GLCTLVAML BLMF1 EBV PMID:34811538 tetramer-sort yes amplicon-seq effector T cells T1D T1D_2 chip0420_78708 PBMC +1551 CAESTSGGKLIF TRAV5*01 TRAJ23*01 CSVGTGGTNEKLFF TRBV29-1*01 TRBJ1-4*01 HLA-A*02:01 B2M MHCI GLCTLVAML BLMF1 EBV PMID:34811538 tetramer-sort yes amplicon-seq effector memory T cells T1D T1D_2 chip0420_625573 PBMC +1552 CAFGGLTF TRAV8-1*01 TRAJ22*01 HLA-A*02:01 B2M MHCI YVLDHLIVV BRLF1 EBV PMID:34811538 tetramer-sort yes amplicon-seq effector memory T cells T1D T1D_2 chip0420_3126 PBMC +1553 CASSSGLVAPGELFF TRBV2*01 TRBJ2-2*01 HLA-A*02:01 B2M MHCI GLCTLVAML BLMF1 EBV PMID:34811538 tetramer-sort yes amplicon-seq effector memory T cells T1D T1D_2 chip0420_622128 PBMC +1554 CAVPLGGFc?tGGYNTLIF TRAV20*01 TRAJ4*01 CASSINGGRRDGYTF TRBV19*01 TRBJ1-2*01 HLA-A*02:01 B2M MHCI GILGFVFTL M1 InfluenzaA PMID:34811538 tetramer-sort yes amplicon-seq transitional T cells between effector and memory populations T1D T1D_1 chip0420_534504 PBMC +1556 CSVGGSFYGYTF TRBV29-1*01 TRBJ1-2*01 HLA-A*02:01 B2M MHCI GLCTLVAML BLMF1 EBV PMID:34811538 tetramer-sort yes amplicon-seq effector T cells T1D T1D_2 chip0420_436896 PBMC +1558 CSVGSRGTNEKLFF TRBV29-1*01 TRBJ1-4*01 HLA-A*02:01 B2M MHCI GLCTLVAML BLMF1 EBV PMID:34811538 tetramer-sort yes amplicon-seq effector T cells T1D T1D_1 chip0420_6675 PBMC +1559 CASSSGQVLPNEQFF TRAV14/DV4*01 TRAJ37*01,TRAJ50*01 CASSSGQVLPNEQFF TRBV2*01 TRBJ2-1*01 HLA-A*02:01 B2M MHCI GLCTLVAML BLMF1 EBV PMID:34811538 tetramer-sort yes amplicon-seq effector memory T cells T1D T1D_1 chip0420_815526 PBMC +1560 CGTQENDSWGKLQF TRAV30*01 TRAJ24*01 CASSVRAGETQYF TRBV19*01 TRBJ2-5*01 HLA-A*02:01 B2M MHCI GILGFVFTL M1 InfluenzaA PMID:34811538 tetramer-sort yes amplicon-seq transitional T cells between effector and memory populations T1D T1D_1 chip0420_530558 PBMC +1561 CASSLSPGGGTEAFF TRBV28*01 TRBJ1-1*01 HLA-A*02:01 B2M MHCI ELAGIGILTV MART1 HomoSapiens PMID:34811538 tetramer-sort yes amplicon-seq Naive T cells T1D T1D_1 chip0420_695568 PBMC +1563 CALGARPGGSYIPTF TRAV6*01 TRAJ6*01 CASSDGRVHPGTQYF TRBV2*01 TRBJ2-5*01 HLA-A*02:01 B2M MHCI GLCTLVAML BLMF1 EBV PMID:34811538 tetramer-sort yes amplicon-seq effector memory T cells T1D T1D_1 chip0420_430531 PBMC +1567 CAAYAGNMLTF TRAV29/DV5*01 TRAJ39*01 CASRAGAGDTQYF TRBV10-2*01 TRBJ2-3*01 HLA-A*02:01 B2M MHCI GLCTLVAML BLMF1 EBV PMID:34811538 tetramer-sort yes amplicon-seq effector memory T cells T1D T1D_2 chip0420_87763 PBMC +1568 CAVKDTDKLIF TRAV8-1*01 TRAJ34*01 HLA-A*02:01 B2M MHCI YVLDHLIVV BRLF1 EBV PMID:34811538 tetramer-sort yes amplicon-seq effector memory T cells T1D T1D_2 chip0420_751266 PBMC +1569 CATQQGTDGQPQPF TRBV28*01 TRBJ1-5*01 HLA-A*02:01 B2M MHCI GLCTLVAML BLMF1 EBV PMID:34811538 tetramer-sort yes amplicon-seq effector memory T cells T1D T1D_1 chip0420_322833 PBMC +1570 CVVNGRDSSYKLIF TRAV12-1*01 TRAJ12*01 HLA-A*02:01 B2M MHCI GLCTLVAML BLMF1 EBV PMID:34811538 tetramer-sort yes amplicon-seq effector memory T cells T1D T1D_1 chip0420_272816 PBMC +1572 CAVSGGYQKVTF TRAV12-2*01 TRAJ13*01 HLA-A*02:01 B2M MHCI LLAGIGTVPI PGT HomoSapiens PMID:34811538 tetramer-sort yes amplicon-seq Naive T cells T1D T1D_1 chip0420_60961 PBMC +1573 CASSQSDPSNTGELFF TRBV4-2*01 TRBJ2-2*01 HLA-A*02:01 B2M MHCI YVLDHLIVV BRLF1 EBV PMID:34811538 tetramer-sort yes amplicon-seq effector T cells T1D T1D_2 chip0420_638568 PBMC +1574 CSVGSRGTNEKLFF TRBV29-1*01 TRBJ1-4*01 HLA-A*02:01 B2M MHCI GLCTLVAML BLMF1 EBV PMID:34811538 tetramer-sort yes amplicon-seq effector T cells T1D T1D_1 chip0420_92814 PBMC +1575 CASSWTASYEQYF TRBV6-2*01,TRBV6-3*01 TRBJ2-7*01 HLA-A*02:01 B2M MHCI YVLDHLIVV BRLF1 EBV PMID:34811538 tetramer-sort yes amplicon-seq effector T cells T1D T1D_2 chip0420_848386 PBMC +1576 CAAYAGNMLTF TRAV29/DV5*01 TRAJ39*01 CASRAGAGDTQYF TRBV10-2*01 TRBJ2-3*01 HLA-A*02:01 B2M MHCI GLCTLVAML BLMF1 EBV PMID:34811538 tetramer-sort yes amplicon-seq effector memory T cells T1D T1D_2 chip0420_841015 PBMC +1577 CASSMLLGGNQPQHF TRBV19*01 TRBJ1-5*01 HLA-A*02:01 B2M MHCI YVLDHLIVV BRLF1 EBV PMID:34811538 tetramer-sort yes amplicon-seq effector T cells T1D T1D_2 chip0420_376931 PBMC +1578 CSVGTGGTNEKLFF TRBV29-1*01 TRBJ1-4*01 HLA-A*02:01 B2M MHCI GLCTLVAML BLMF1 EBV PMID:34811538 tetramer-sort yes amplicon-seq effector memory T cells T1D T1D_2 chip0420_67626 PBMC +1579 CASLTPGASLIIF TRAV8-6*01 TRAJ3*01 CASSSGLVAPGELFF TRBV2*01 TRBJ2-2*01 HLA-A*02:01 B2M MHCI GLCTLVAML BLMF1 EBV PMID:34811538 tetramer-sort yes amplicon-seq effector memory T cells T1D T1D_2 chip0420_449203 PBMC +1580 CATQQGRDSQPQHF TRBV28*01 TRBJ1-5*01 HLA-A*02:01 B2M MHCI GLCTLVAML BLMF1 EBV PMID:34811538 tetramer-sort yes amplicon-seq effector memory T cells T1D T1D_1 chip0420_441053 PBMC +1582 CSASPLGREGNNEQFF TRBV20-1*01 TRBJ2-1*01 HLA-A*02:01 B2M MHCI GLCTLVAML BLMF1 EBV PMID:34811538 tetramer-sort yes amplicon-seq effector memory T cells T1D T1D_1 chip0420_228042 PBMC +1583 CSVGSRGTNEKLFF TRBV29-1*01 TRBJ1-4*01 HLA-A*02:01 B2M MHCI GLCTLVAML BLMF1 EBV PMID:34811538 tetramer-sort yes amplicon-seq effector memory T cells T1D T1D_1 chip0420_628193 PBMC +1584 CAVKDTDKLIF TRAV8-1*01 TRAJ34*01 HLA-A*02:01 B2M MHCI YVLDHLIVV BRLF1 EBV PMID:34811538 tetramer-sort yes amplicon-seq effector T cells T1D T1D_2 chip0420_79756 PBMC +1585 CAESTSGGKLIF TRAV5*01 TRAJ23*01 CSVGTGGTNEKLFF TRBV29-1*01 TRBJ1-4*01 HLA-A*02:01 B2M MHCI GLCTLVAML BLMF1 EBV PMID:34811538 tetramer-sort yes amplicon-seq effector memory T cells T1D T1D_2 chip0420_799261 PBMC +1586 CASRAWLRt?gG*DGKLFF TRBV2*01 TRBJ1-4*01 HLA-A*02:01 B2M MHCI YVLDHLIVV BRLF1 EBV PMID:34811538 tetramer-sort yes amplicon-seq effector memory T cells T1D T1D_1 chip0420_252656 PBMC +1587 CAFGGLTF TRAV8-1*01 TRAJ22*01 CASSPSTSGSGETQYF TRBV3-1*01 TRBJ2-5*01 HLA-A*02:01 B2M MHCI YVLDHLIVV BRLF1 EBV PMID:34811538 tetramer-sort yes amplicon-seq effector memory T cells T1D T1D_2 chip0420_860739 PBMC +1588 CASSSGLVAPGELFF TRBV2*01 TRBJ2-2*01 HLA-A*02:01 B2M MHCI GLCTLVAML BLMF1 EBV PMID:34811538 tetramer-sort yes amplicon-seq effector memory T cells T1D T1D_2 chip0420_396837 PBMC +1589 CSVGTGGTNEKLFF TRBV29-1*01 TRBJ1-4*01 HLA-A*02:01 B2M MHCI GLCTLVAML BLMF1 EBV PMID:34811538 tetramer-sort yes amplicon-seq effector memory T cells T1D T1D_2 chip0420_308090 PBMC +1590 CAGSDFQGAQKLVF TRAV35*01 TRAJ54*01 CASSLAGGGEQYF TRBV5-1*01 TRBJ2-7*01 HLA-A*02:01 B2M MHCI YVLDHLIVV BRLF1 EBV PMID:34811538 tetramer-sort yes amplicon-seq effector memory T cells T1D T1D_2 chip0420_780246 PBMC +1591 CAVLMDSNYQLIW TRAV21*01 TRAJ33*01 CASSEDGMNTEAFF TRBV10-2*01 TRBJ1-1*01 HLA-A*02:01 B2M MHCI CLGGLLTMV LMP2A EBV PMID:34811538 tetramer-sort yes amplicon-seq effector memory T cells T1D T1D_2 chip0420_52534 PBMC +1592 CAAPDTDKLIF TRAV8-1*01 TRAJ34*01 HLA-A*02:01 B2M MHCI YVLDHLIVV BRLF1 EBV PMID:34811538 tetramer-sort yes amplicon-seq effector memory T cells T1D T1D_2 chip0420_873189 PBMC +1593 CASSSGQVLPNEQFF TRBV2*01 TRBJ2-1*01 HLA-A*02:01 B2M MHCI GLCTLVAML BLMF1 EBV PMID:34811538 tetramer-sort yes amplicon-seq effector memory T cells T1D T1D_1 chip0420_351065 PBMC +1594 CLLSLFGPP??gRRNAGKSTF TRAV26-2*01 TRAJ27*01 HLA-A*02:01 B2M MHCI GLCTLVAML BLMF1 EBV PMID:34811538 tetramer-sort yes amplicon-seq effector memory T cells T1D T1D_1 chip0420_347112 PBMC +1595 CSVGTGGTNEKLFF TRBV29-1*01 TRBJ1-4*01 HLA-A*02:01 B2M MHCI GLCTLVAML BLMF1 EBV PMID:34811538 tetramer-sort yes amplicon-seq effector memory T cells T1D T1D_2 chip0420_301363 PBMC +1597 CGPEEPNDYKLSF TRAV30*01 TRAJ20*01 CASSTGQLSNTGELFF TRBV9*01 TRBJ2-2*01 HLA-A*02:01 B2M MHCI GLCTLVAML BLMF1 EBV PMID:34811538 tetramer-sort yes amplicon-seq effector memory T cells T1D T1D_1 chip0420_118161 PBMC +1598 CATQQERDSQPQHF TRBV28*01 TRBJ1-5*01 HLA-A*02:01 B2M MHCI GLCTLVAML BLMF1 EBV PMID:34811538 tetramer-sort yes amplicon-seq effector memory T cells T1D T1D_1 chip0420_591246 PBMC +1599 CAMSNSNFGNEKLTF TRAV12-3*01 TRAJ48*01 HLA-A*02:01 B2M MHCI LLAGIGTVPI PGT HomoSapiens PMID:34811538 tetramer-sort yes amplicon-seq Naive T cells T1D T1D_1 chip0420_283525 PBMC +1600 CACSINGGRRDGYTF TRBV19*01 TRBJ1-2*01 HLA-A*02:01 B2M MHCI GILGFVFTL M1 InfluenzaA PMID:34811538 tetramer-sort yes amplicon-seq transitional T cells between effector and memory populations T1D T1D_1 chip0420_265376 PBMC +1601 CASFDGGSQGNLIF TRAV24*01 TRAJ42*01 CASSIAGFEQYF TRBV19*01 TRBJ2-7*01 HLA-A*02:01 B2M MHCI GILGFVFTL M1 InfluenzaA PMID:34811538 tetramer-sort yes amplicon-seq transitional T cells between effector and memory populations T1D T1D_1 chip0420_102119 PBMC +1602 CASSSGGPVDTPYF TRBV7-3*01 TRBJ2-3*01 HLA-A*02:01 B2M MHCI GLCTLVAML BLMF1 EBV PMID:34811538 tetramer-sort yes amplicon-seq effector memory T cells T1D T1D_1 chip0420_656462 PBMC +1603 CANRAGAGDTQYF TRBV10-2*01 TRBJ2-3*01 HLA-A*02:01 B2M MHCI GLCTLVAML BLMF1 EBV PMID:34811538 tetramer-sort yes amplicon-seq effector T cells T1D T1D_2 chip0420_427018 PBMC +1605 CANSEGRVSPGEAFF TRBV2*01 TRBJ1-1*01 HLA-A*02:01 B2M MHCI GLCTLVAML BLMF1 EBV PMID:34811538 tetramer-sort yes amplicon-seq effector memory T cells tet_neg chip0420_89882 PBMC +1607 CASSSLAELQYF TRBV7-2*01 TRBJ2-7*01 HLA-A*02:01 B2M MHCI LLAGIGTVPI PGT HomoSapiens PMID:34811538 tetramer-sort yes amplicon-seq Naive T cells T1D T1D_1 chip0420_199251 PBMC +1611 CAATKLRTQGGSEKLVF TRAV21*01 TRAJ57*01 CASSLEVPSGTGGREQYF TRBV5-6*01 TRBJ2-7*01 HLA-A*02:01 B2M MHCI LLAGIGTVPI PGT HomoSapiens PMID:34811538 tetramer-sort yes amplicon-seq Naive T cells T1D T1D_1 chip0420_649487 PBMC +1612 CASSINGGRRDGYTF TRBV19*01 TRBJ1-2*01 HLA-A*02:01 B2M MHCI GILGFVFTL M1 InfluenzaA PMID:34811538 tetramer-sort yes amplicon-seq transitional T cells between effector and memory populations T1D T1D_1 chip0420_384525 PBMC +1613 CSVGTGGTNEKLFF TRBV29-1*01 TRBJ1-4*01 HLA-A*02:01 B2M MHCI GLCTLVAML BLMF1 EBV PMID:34811538 tetramer-sort yes amplicon-seq effector memory T cells T1D T1D_2 chip0420_206079 PBMC +1614 CVVNGRDSSYKLIF TRAV12-1*01 TRAJ12*01 CASSSGLVAPGELFF TRBV2*01 TRBJ2-2*01 HLA-A*02:01 B2M MHCI GLCTLVAML BLMF1 EBV PMID:34811538 tetramer-sort yes amplicon-seq effector memory T cells T1D T1D_2 chip0420_2553 PBMC +1615 CVVNGRDSSYQLIF TRAV12-1*01 TRAJ12*01 CASSSGLVAPGELFF TRBV2*01 TRBJ2-2*01 HLA-A*02:01 B2M MHCI GLCTLVAML BLMF1 EBV PMID:34811538 tetramer-sort yes amplicon-seq effector T cells T1D T1D_2 chip0420_465414 PBMC +1616 CASSSGGNVDTQYF TRBV7-3*01 TRBJ2-3*01 HLA-A*02:01 B2M MHCI GLCTLVAML BLMF1 EBV PMID:34811538 tetramer-sort yes amplicon-seq effector memory T cells T1D T1D_1 chip0420_185095 PBMC +1617 CAESTS??gGEKLLF TRAV5*01 TRAJ23*01 CSVGSRGTNEKLFF TRBV29-1*01 TRBJ1-4*01 HLA-A*02:01 B2M MHCI GLCTLVAML BLMF1 EBV PMID:34811538 tetramer-sort yes amplicon-seq effector memory T cells T1D T1D_1 chip0420_402769 PBMC +1618 CASSINGGRRDGYTF TRBV19*01 TRBJ1-2*01 HLA-A*02:01 B2M MHCI GILGFVFTL M1 InfluenzaA PMID:34811538 tetramer-sort yes amplicon-seq transitional T cells between effector and memory populations T1D T1D_1 chip0420_382676 PBMC +1621 CSVGTGGTNEKLFF TRBV29-1*01 TRBJ1-4*01 HLA-A*02:01 B2M MHCI GLCTLVAML BLMF1 EBV PMID:34811538 tetramer-sort yes amplicon-seq effector memory T cells T1D T1D_2 chip0420_797290 PBMC +1622 CALCGGGGTKLTF TRAV16*01 TRAJ10*01 CASRQGDGDTQYF TRBV10-2*01 TRBJ2-3*01 HLA-A*02:01 B2M MHCI GLCTLVAML BLMF1 EBV PMID:34811538 tetramer-sort yes amplicon-seq effector memory T cells T1D T1D_2 chip0420_538946 PBMC +1623 CAVKRRAAGNKLTF TRAV12-2*01 TRAJ17*01 CASTDTLSLINTGELFF TRBV28*01 TRBJ2-2*01 HLA-A*02:01 B2M MHCI YVLDHLIVV BRLF1 EBV PMID:34811538 tetramer-sort yes amplicon-seq effector memory T cells T1D T1D_2 chip0420_286958 PBMC +1625 CALKNTDKLIF TRAV16*01 TRAJ34*01 CASSQSRGSLWDTQYF TRBV4-3*01 TRBJ2-3*01 HLA-A*02:01 B2M MHCI YVLDHLIVV BRLF1 EBV PMID:34811538 tetramer-sort yes amplicon-seq effector T cells T1D T1D_2 chip0420_525815 PBMC +1626 CASRAGAGDTQYF TRBV10-2*01 TRBJ2-3*01 HLA-A*02:01 B2M MHCI GLCTLVAML BLMF1 EBV PMID:34811538 tetramer-sort yes amplicon-seq effector memory T cells T1D T1D_2 chip0420_341595 PBMC +1627 CVVNGRDSSYKLIF TRAV12-1*01 TRAJ12*01 CASSSGLVAPGELFF TRBV2*01 TRBJ2-2*01 HLA-A*02:01 B2M MHCI GLCTLVAML BLMF1 EBV PMID:34811538 tetramer-sort yes amplicon-seq effector T cells T1D T1D_2 chip0420_68360 PBMC +1628 CATQQGRDSQPQHF TRBV28*01 TRBJ1-5*01 HLA-A*02:01 B2M MHCI GLCTLVAML BLMF1 EBV PMID:34811538 tetramer-sort yes amplicon-seq effector T cells T1D T1D_1 chip0420_528059 PBMC +1629 RASSSGGNVDTQYF TRBV7-3*01 TRBJ2-3*01 HLA-A*02:01 B2M MHCI GLCTLVAML BLMF1 EBV PMID:34811538 tetramer-sort yes amplicon-seq effector memory T cells T1D T1D_1 chip0420_342133 PBMC +1630 CASRMGAGDTQYF TRBV10-2*01 TRBJ2-3*01 HLA-A*02:01 B2M MHCI GLCTLVAML BLMF1 EBV PMID:34811538 tetramer-sort yes amplicon-seq effector memory T cells T1D T1D_2 chip0420_37658 PBMC +1631 CAVEWL*??cNTGKLIF TRAV2*01 TRAJ37*01 HLA-A*02:01 B2M MHCI YVLDHLIVV BRLF1 EBV PMID:34811538 tetramer-sort yes amplicon-seq effector T cells T1D T1D_2 chip0420_745954 PBMC +1632 CASRALLGGKETQYF TRBV6-1*01 TRBJ2-5*01 HLA-A*02:01 B2M MHCI YVLDHLIVV BRLF1 EBV PMID:34811538 tetramer-sort yes amplicon-seq effector T cells T1D T1D_1 chip0420_409736 PBMC +1633 RVVNGRDSSYKLIF TRAV12-1*01 TRAJ12*01 HLA-A*02:01 B2M MHCI GLCTLVAML BLMF1 EBV PMID:34811538 tetramer-sort yes amplicon-seq effector memory T cells T1D T1D_1 chip0420_852234 PBMC +1634 CATQQGGASQPQHF TRBV28*01 TRBJ1-5*01 HLA-A*02:01 B2M MHCI GLCTLVAML BLMF1 EBV PMID:34811538 tetramer-sort yes amplicon-seq effector T cells T1D T1D_1 chip0420_806240 PBMC +1635 CSAGTGGTNEKLFF TRBV29-1*01 TRBJ1-4*01 HLA-A*02:01 B2M MHCI GLCTLVAML BLMF1 EBV PMID:34811538 tetramer-sort yes amplicon-seq effector T cells T1D T1D_2 chip0420_755833 PBMC +1636 CATQQGRDSQPQHF TRBV28*01 TRBJ1-5*01 HLA-A*02:01 B2M MHCI GLCTLVAML BLMF1 EBV PMID:34811538 tetramer-sort yes amplicon-seq effector memory T cells T1D T1D_1 chip0420_74954 PBMC +1638 CASSPVSGSTYEQYF TRBV3-1*01 TRBJ2-7*01 HLA-A*02:01 B2M MHCI GLCTLVAML BLMF1 EBV PMID:34811538 tetramer-sort yes amplicon-seq effector T cells T1D T1D_1 chip0420_158045 PBMC +1639 CASSSGLVAPGELFF TRBV2*01 TRBJ2-2*01 HLA-A*02:01 B2M MHCI GLCTLVAML BLMF1 EBV PMID:34811538 tetramer-sort yes amplicon-seq effector T cells T1D T1D_2 chip0420_24492 PBMC +1640 CASSPGDARGEQYF TRBV5-6*01 TRBJ2-7*01 HLA-A*02:01 B2M MHCI YLLEMLWRL LMP1 EBV PMID:34811538 tetramer-sort yes amplicon-seq central memory T cells T1D T1D_1 chip0420_588926 PBMC +1641 CAFHSSNTGKLIF TRAV12-2*01 TRAJ37*01 HLA-A*02:01 B2M MHCI ALAGIGILTV MART1 HomoSapiens PMID:34811538 tetramer-sort yes amplicon-seq Naive T cells T1D T1D_2 chip0420_507047 PBMC +1642 CASSVRAGETQYF TRBV19*01 TRBJ2-5*01 HLA-A*02:01 B2M MHCI GILGFVFTL M1 InfluenzaA PMID:34811538 tetramer-sort yes amplicon-seq transitional T cells between effector and memory populations T1D T1D_1 chip0420_124465 PBMC +1643 CSVGGSFYGYTF TRBV29-1*01 TRBJ1-2*01 HLA-A*02:01 B2M MHCI GLCTLVAML BLMF1 EBV PMID:34811538 tetramer-sort yes amplicon-seq effector memory T cells T1D T1D_2 chip0420_271374 PBMC +1645 CASSYMSGEAFF TRBV6-2*01,TRBV6-3*01 TRBJ1-1*01 HLA-A*02:01 B2M MHCI YVLDHLIVV BRLF1 EBV PMID:34811538 tetramer-sort yes amplicon-seq effector memory T cells T1D T1D_2 chip0420_261831 PBMC +1648 CALGGLTF TRAV8-1*01 TRAJ22*01 CASPPSTSGSGETKYF TRBV3-1*01 TRBJ2-5*01 HLA-A*02:01 B2M MHCI YVLDHLIVV BRLF1 EBV PMID:34811538 tetramer-sort yes amplicon-seq effector T cells T1D T1D_2 chip0420_158738 PBMC +1649 CAWRPLLGGASEAFF TRBV30*01 TRBJ1-1*01 HLA-A*02:01 B2M MHCI YVLDHLIVV BRLF1 EBV PMID:34811538 tetramer-sort yes amplicon-seq effector memory T cells T1D T1D_2 chip0420_292814 PBMC +1650 CASSVGVTATEAFF TRBV9*01 TRBJ1-1*01 HLA-A*02:01 B2M MHCI LLAGIGTVPI PGT HomoSapiens PMID:34811538 tetramer-sort yes amplicon-seq Naive T cells T1D T1D_1 chip0420_575545 PBMC +1651 CSVDQRTGQKKNYGYTF TRBV29-1*01 TRBJ1-2*01 HLA-A*02:01 B2M MHCI GLCTLVAML BLMF1 EBV PMID:34811538 tetramer-sort yes amplicon-seq effector memory T cells T1D T1D_2 chip0420_143902 PBMC +1652 CAVVSNSGYALNF TRAV21*01 TRAJ41*01 HLA-A*02:01 B2M MHCI GLCTLVAML BLMF1 EBV PMID:34811538 tetramer-sort yes amplicon-seq effector memory T cells T1D T1D_1 chip0420_122996 PBMC +1654 CSVGTGGTNEKLSF TRBV29-1*01 TRBJ1-4*01 HLA-A*02:01 B2M MHCI GLCTLVAML BLMF1 EBV PMID:34811538 tetramer-sort yes amplicon-seq effector memory T cells T1D T1D_2 chip0420_845487 PBMC +1657 CASSQSPGGTQYF TRBV14*01 TRBJ2-3*01 HLA-A*02:01 B2M MHCI GLCTLVAML BLMF1 EBV PMID:34811538 tetramer-sort yes amplicon-seq effector memory T cells T1D T1D_1 chip0420_56616 PBMC +1659 CAYRSVNNNDMRF TRAV38-2/DV8*01 TRAJ43*01 CASSDFGLLGTEAFF TRBV6-1*01 TRBJ1-1*01 HLA-A*02:01 B2M MHCI GILGFVFTL M1 InfluenzaA PMID:34811538 tetramer-sort yes amplicon-seq Naive T cells T1D T1D_1 chip0420_673904 PBMC +1660 CASRPLTGGGTEAFF TRAV9-1*01 TRAJ40*01 HLA-A*02:01 B2M MHCI YVLDHLIVV BRLF1 EBV PMID:34811538 tetramer-sort yes amplicon-seq effector memory T cells T1D T1D_2 chip0420_205370 PBMC +1661 CVVSTLgc?NTGKLIF TRAV10*01 TRAJ37*01 HLA-A*02:01 B2M MHCI GLCTLVAML BLMF1 EBV PMID:34811538 tetramer-sort yes amplicon-seq effector memory T cells T1D T1D_2 chip0420_204906 PBMC +1662 CILRRYGGSQGNLIF TRAV26-2*01 TRAJ42*01 HLA-A*02:01 B2M MHCI GLCTLVAML BLMF1 EBV PMID:34811538 tetramer-sort yes amplicon-seq effector memory T cells T1D T1D_1 chip0420_146529 PBMC +1663 CASSMRSAYEQYF TRBV19*01 TRBJ2-7*01 HLA-A*02:01 B2M MHCI GILGFVFTL M1 InfluenzaA PMID:34811538 tetramer-sort yes amplicon-seq transitional T cells between effector and memory populations T1D T1D_1 chip0420_411484 PBMC +1667 CAVKDTDKLIF TRAV12-2*01 TRAJ34*01 CAWSGTSGSYNEQFF TRBV30*01 TRBJ2-1*01 HLA-A*02:01 B2M MHCI YVLDHLIVV BRLF1 EBV PMID:34811538 tetramer-sort yes amplicon-seq effector memory T cells T1D T1D_2 chip0420_452770 PBMC +1668 CSVGSRGTNEKLFF TRBV29-1*01 TRBJ1-4*01 HLA-A*02:01 B2M MHCI GLCTLVAML BLMF1 EBV PMID:34811538 tetramer-sort yes amplicon-seq effector memory T cells T1D T1D_1 chip0420_659689 PBMC +1669 CGPEEPNDYKLSF TRAV30*01 TRAJ20*01 CASSTGQLSNTGELFF TRBV9*01 TRBJ2-2*01 HLA-A*02:01 B2M MHCI GLCTLVAML BLMF1 EBV PMID:34811538 tetramer-sort yes amplicon-seq effector memory T cells T1D T1D_1 chip0420_484860 PBMC +1671 CAVNLYSTLTF TRAV8-1*01 TRAJ11*01 HLA-A*02:01 B2M MHCI YVLDHLIVV BRLF1 EBV PMID:34811538 tetramer-sort yes amplicon-seq effector T cells T1D T1D_2 chip0420_254233 PBMC +1672 CVVFSSNTGKLIF TRAV12-1*01 TRAJ37*01 CASSEDGSGIYNSPLHF TRBV2*01 TRBJ1-6*01 HLA-A*02:01 B2M MHCI ELAGIGILTV MART1 HomoSapiens PMID:34811538 tetramer-sort yes amplicon-seq Naive T cells T1D T1D_1 chip0420_702846 PBMC +1673 CAVSFGNQFYF TRAV21*01 TRAJ49*01 HLA-A*02:01 B2M MHCI GILGFVFTL M1 InfluenzaA PMID:34811538 tetramer-sort yes amplicon-seq transitional T cells between effector and memory populations T1D T1D_1 chip0420_546114 PBMC +1674 CVVSPFSGGSPPLLF TRAV12-1*01 TRAJ4*01 CSVTAWGQRGFVEQFF TRBV29-1*01 TRBJ2-1*01 HLA-A*02:01 B2M MHCI CLGGLLTMV LMP2A EBV PMID:34811538 tetramer-sort yes amplicon-seq Naive T cells T1D T1D_1 chip0420_662379 PBMC +1675 CAVQPGGYNKLIF TRAV41*01,TRAV12-2*01 TRAJ4*01 CASSVRAGETQYF TRBV19*01 TRBJ2-5*01 HLA-A*02:01 B2M MHCI GILGFVFTL M1 InfluenzaA PMID:34811538 tetramer-sort yes amplicon-seq transitional T cells between effector and memory populations T1D T1D_1 chip0420_480362 PBMC +1676 CASSLEGQASSYEQYF TRBV5-1*01 TRBJ2-7*01 HLA-A*02:01 B2M MHCI CLGGLLTMV LMP2A EBV PMID:34811538 tetramer-sort yes amplicon-seq transitional T cells between effector and memory populations T1D T1D_2 chip0420_135897 PBMC +1677 CVVNGRDSSYKLIF TRAV12-1*01 TRAJ12*01 CASSSGLVAPGELFF TRBV2*01 TRBJ2-2*01 HLA-A*02:01 B2M MHCI GLCTLVAML BLMF1 EBV PMID:34811538 tetramer-sort yes amplicon-seq effector T cells T1D T1D_2 chip0420_342897 PBMC +1678 CASRAGAGDTQYF TRBV10-2*01 TRBJ2-3*01 HLA-A*02:01 B2M MHCI GLCTLVAML BLMF1 EBV PMID:34811538 tetramer-sort yes amplicon-seq effector memory T cells T1D T1D_2 chip0420_148027 PBMC +1679 CASSAGTVAPGELFF TRBV2*01 TRBJ2-2*01 HLA-A*02:01 B2M MHCI GLCTLVAML BLMF1 EBV PMID:34811538 tetramer-sort yes amplicon-seq effector T cells T1D T1D_1 chip0420_705023 PBMC +1682 CSVGTGGTNEKLFF TRBV29-1*01 TRBJ1-4*01 HLA-A*02:01 B2M MHCI GLCTLVAML BLMF1 EBV PMID:34811538 tetramer-sort yes amplicon-seq effector memory T cells T1D T1D_2 chip0420_274987 PBMC +1684 CSVTGYGANVLTF TRBV29-1*01 TRBJ2-6*01 HLA-A*02:01 B2M MHCI KMYAFTLES ZNT8 HomoSapiens PMID:34811538 tetramer-sort yes amplicon-seq Naive T cells T1D T1D_2 chip0420_751320 PBMC +1685 CSVGSRGTNEKLFF TRBV29-1*01 TRBJ1-4*01 HLA-A*02:01 B2M MHCI GLCTLVAML BLMF1 EBV PMID:34811538 tetramer-sort yes amplicon-seq effector memory T cells T1D T1D_1 chip0420_327384 PBMC +1686 CALGGLTF TRAV8-1*01 TRAJ22*01 CASSPSTSESGETQYF TRBV3-1*01 TRBJ2-5*01 HLA-A*02:01 B2M MHCI YVLDHLIVV BRLF1 EBV PMID:34811538 tetramer-sort yes amplicon-seq effector memory T cells T1D T1D_2 chip0420_655828 PBMC +1687 CASSLRSSDTQYF TRBV19*01 TRBJ2-3*01 HLA-A*02:01 B2M MHCI GILGFVFTL M1 InfluenzaA PMID:34811538 tetramer-sort yes amplicon-seq central memory T cells T1D T1D_1 chip0420_96253 PBMC +1688 CGTAEPNDYKLSF TRAV30*01 TRAJ20*01 CASSTGQLSNTGELFF TRBV9*01 TRBJ2-2*01 HLA-A*02:01 B2M MHCI GLCTLVAML BLMF1 EBV PMID:34811538 tetramer-sort yes amplicon-seq effector memory T cells T1D T1D_1 chip0420_70471 PBMC +1689 CASSVRAGETQYF TRBV19*01 TRBJ2-5*01 HLA-A*02:01 B2M MHCI GILGFVFTL M1 InfluenzaA PMID:34811538 tetramer-sort yes amplicon-seq transitional T cells between effector and memory populations T1D T1D_1 chip0420_191479 PBMC +1690 CTEAANQAGTALIF TRAV5*01 TRAJ15*01 HLA-A*02:01 B2M MHCI GLCTLVAML BLMF1 EBV PMID:34811538 tetramer-sort yes amplicon-seq effector T cells T1D T1D_1 chip0420_883411 PBMC +1692 CAVDPWGNQFYF TRAV39*01 TRAJ49*01 CATQQGRDSQPQHF TRBV28*01 TRBJ1-5*01 HLA-A*02:01 B2M MHCI GLCTLVAML BLMF1 EBV PMID:34811538 tetramer-sort yes amplicon-seq effector T cells T1D T1D_1 chip0420_148245 PBMC +1693 CASSINGGRRDGYTF TRBV19*01 TRBJ1-2*01 HLA-A*02:01 B2M MHCI GILGFVFTL M1 InfluenzaA PMID:34811538 tetramer-sort yes amplicon-seq transitional T cells between effector and memory populations T1D T1D_1 chip0420_837225 PBMC +1694 CAVKDTDKLIF TRAV8-1*01 TRAJ34*01 HLA-A*02:01 B2M MHCI YVLDHLIVV BRLF1 EBV PMID:34811538 tetramer-sort yes amplicon-seq effector memory T cells T1D T1D_2 chip0420_627900 PBMC +1695 CAFMKGAGGTSYGKLTF TRAV38-1*01 TRAJ52*01 CASSMGSYGYTF TRBV19*01 TRBJ1-2*01 HLA-A*02:01 B2M MHCI GILGFVFTL M1 InfluenzaA PMID:34811538 tetramer-sort yes amplicon-seq transitional T cells between effector and memory populations T1D T1D_1 chip0420_452539 PBMC +1696 CAESEQ??aDAKIIF TRAV13-2*01 TRAJ30*01 CASSLETRDEQYF TRBV7-8*01 TRBJ2-7*01 HLA-A*02:01 B2M MHCI FMYSDFHFI PA InfluenzaA PMID:34811538 tetramer-sort yes amplicon-seq Naive T cells T1D T1D_1 chip0420_368073 PBMC +1698 CSVGTGGTNEKLFF TRBV29-1*01 TRBJ1-4*01 HLA-A*02:01 B2M MHCI GLCTLVAML BLMF1 EBV PMID:34811538 tetramer-sort yes amplicon-seq effector memory T cells T1D T1D_2 chip0420_445599 PBMC +1699 CATDLGGGSQGNLIF TRAV17*01 TRAJ42*01 HLA-A*02:01 B2M MHCI GILGFVFTL M1 InfluenzaA PMID:34811538 tetramer-sort yes amplicon-seq transitional T cells between effector and memory populations T1D T1D_1 chip0420_687828 PBMC +1700 CSTQEGGYGYTF TRBV29-1*01 TRBJ1-2*01 HLA-A*02:01 B2M MHCI GLCTLVAML BLMF1 EBV PMID:34811538 tetramer-sort yes amplicon-seq effector memory T cells T1D T1D_1 chip0420_625969 PBMC +1701 CASSEGRVSPGETFF TRBV2*01 TRBJ1-1*01 HLA-A*02:01 B2M MHCI GLCTLVAML BLMF1 EBV PMID:34811538 tetramer-sort yes amplicon-seq effector T cells T1D T1D_1 chip0420_373084 PBMC +1702 CASLTPGASKIIF TRAV8-6*01 TRAJ3*01 CASSSGLVAPGELFF TRBV2*01 TRBJ2-2*01 HLA-A*02:01 B2M MHCI GLCTLVAML BLMF1 EBV PMID:34811538 tetramer-sort yes amplicon-seq effector memory T cells T1D T1D_2 chip0420_437436 PBMC +1704 CVVNPGGGQLTF TRAV12-1*01 TRAJ22*01 HLA-A*02:01 B2M MHCI ALAGIGILTV MART1 HomoSapiens PMID:34811538 tetramer-sort yes amplicon-seq Naive T cells T1D T1D_1 chip0420_624948 PBMC +1705 CASSPRSTDTQYF TRBV19*01 TRBJ2-3*01 HLA-A*02:01 B2M MHCI GILGFVFTL M1 InfluenzaA PMID:34811538 tetramer-sort yes amplicon-seq transitional T cells between effector and memory populations T1D T1D_1 chip0420_561161 PBMC +1706 CSVGSRGTNEKLFF TRBV29-1*01 TRBJ1-4*01 HLA-A*02:01 B2M MHCI GLCTLVAML BLMF1 EBV PMID:34811538 tetramer-sort yes amplicon-seq effector memory T cells T1D T1D_1 chip0420_554699 PBMC +1707 CASSIYGGSGEAFF TRBV19*01 TRBJ1-1*01 HLA-A*02:01 B2M MHCI GILGFVFTL M1 InfluenzaA PMID:34811538 tetramer-sort yes amplicon-seq transitional T cells between effector and memory populations T1D T1D_1 chip0420_108311 PBMC +1708 CAVDPWGNQFYF TRAV39*01 TRAJ49*01 HLA-A*02:01 B2M MHCI GLCTLVAML BLMF1 EBV PMID:34811538 tetramer-sort yes amplicon-seq effector memory T cells T1D T1D_1 chip0420_573560 PBMC +1709 CASSSGLVAPGELFF TRBV2*01 TRBJ2-2*01 HLA-A*02:01 B2M MHCI GLCTLVAML BLMF1 EBV PMID:34811538 tetramer-sort yes amplicon-seq effector memory T cells T1D T1D_2 chip0420_513948 PBMC +1710 CSVGTGGTNEKLFF TRBV29-1*01 TRBJ1-4*01 HLA-A*02:01 B2M MHCI GLCTLVAML BLMF1 EBV PMID:34811538 tetramer-sort yes amplicon-seq effector memory T cells T1D T1D_2 chip0420_299814 PBMC +1712 CVVNGGDSSYKLIF TRAV12-1*01 TRAJ12*01 CASSSGQVLPNEQFF TRBV2*01 TRBJ2-1*01 HLA-A*02:01 B2M MHCI GLCTLVAML BLMF1 EBV PMID:34811538 tetramer-sort yes amplicon-seq effector memory T cells T1D T1D_1 chip0420_854029 PBMC +1713 CSVGGSFYGYTF TRBV29-1*01 TRBJ1-2*01 HLA-A*02:01 B2M MHCI GLCTLVAML BLMF1 EBV PMID:34811538 tetramer-sort yes amplicon-seq effector memory T cells T1D T1D_2 chip0420_59068 PBMC +1715 CAVCGtt?GVGLRL TRAV8-4*01 TRAJ43*01 CSVP*QGRLSNQPQHF TRBV29-1*01 TRBJ1-5*01 HLA-A*02:01 B2M MHCI GLCTLVAML BLMF1 EBV PMID:34811538 tetramer-sort yes amplicon-seq effector memory T cells T1D T1D_1 chip0420_249853 PBMC +1716 CAVDPWGNQFYF TRAV39*01 TRAJ49*01 CATQQGRDSQPQHF TRBV28*01 TRBJ1-5*01 HLA-A*02:01 B2M MHCI GLCTLVAML BLMF1 EBV PMID:34811538 tetramer-sort yes amplicon-seq effector memory T cells T1D T1D_1 chip0420_117934 PBMC +1718 CAVNEGSYIPTF TRAV12-2*01 TRAJ6*01 HLA-A*02:01 B2M MHCI LLAGIGTVPI PGT HomoSapiens PMID:34811538 tetramer-sort yes amplicon-seq Naive T cells T1D T1D_1 chip0420_499184 PBMC +1719 CALIYYGGSQGNLVF TRAV19*01 TRAJ42*01 CATFPGGSYEQYF TRBV28*01 TRBJ2-7*01 HLA-A*02:01 B2M MHCI YLLEMLWRL LMP1 EBV PMID:34811538 tetramer-sort yes amplicon-seq central memory T cells T1D T1D_1 chip0420_803195 PBMC +1720 CAAYAGNMLTF TRAV29/DV5*01 TRAJ39*01 CASRMGAGDTQYF TRBV10-2*01 TRBJ2-3*01 HLA-A*02:01 B2M MHCI GLCTLVAML BLMF1 EBV PMID:34811538 tetramer-sort yes amplicon-seq effector memory T cells T1D T1D_2 chip0420_290223 PBMC +1722 CVVNGRDSSYKLIF TRAV12-1*01 TRAJ12*01 CASSSGLVAPGELFF TRBV2*01 TRBJ2-2*01 HLA-A*02:01 B2M MHCI GLCTLVAML BLMF1 EBV PMID:34811538 tetramer-sort yes amplicon-seq effector memory T cells T1D T1D_2 chip0420_729795 PBMC +1726 CSVGTGGTNEKLFS TRBV29-1*01 TRBJ1-4*01 HLA-A*02:01 B2M MHCI GLCTLVAML BLMF1 EBV PMID:34811538 tetramer-sort yes amplicon-seq effector memory T cells T1D T1D_2 chip0420_463845 PBMC +1729 CAVEEYDSGYALNF TRAV2*01 TRAJ41*01 CASSGPSISQETQYF TRBV5-5*01 TRBJ2-5*01 HLA-A*02:01 B2M MHCI CLGGLLTMV LMP2A EBV PMID:34811538 tetramer-sort yes amplicon-seq Naive T cells T1D T1D_1 chip0420_771159 PBMC +1730 CSVGSRGTNEKLFF TRBV29-1*01 TRBJ1-4*01 HLA-A*02:01 B2M MHCI GLCTLVAML BLMF1 EBV PMID:34811538 tetramer-sort yes amplicon-seq effector memory T cells T1D T1D_1 chip0420_521515 PBMC +1731 CASSPVSGSTYEQYF TRBV3-1*01 TRBJ2-7*01 HLA-A*02:01 B2M MHCI GLCTLVAML BLMF1 EBV PMID:34811538 tetramer-sort yes amplicon-seq effector memory T cells T1D T1D_1 chip0420_182880 PBMC +1732 CVVNGGDSSYKLIF TRAV12-1*01 TRAJ12*01 CASSSGQVLPNEQFF TRBV2*01 TRBJ2-1*01 HLA-A*02:01 B2M MHCI GLCTLVAML BLMF1 EBV PMID:34811538 tetramer-sort yes amplicon-seq effector memory T cells T1D T1D_1 chip0420_146914 PBMC +1733 CAMREDNAGNMLTF TRAV14/DV4*01 TRAJ39*01 HLA-A*02:01 B2M MHCI GILGFVFTL M1 InfluenzaA PMID:34811538 tetramer-sort yes amplicon-seq transitional T cells between effector and memory populations T1D T1D_1 chip0420_81144 PBMC +1734 CASSRAGEASTEAFF TRBV7-9*01 TRBJ1-1*01 HLA-A*02:01 B2M MHCI LLFNILGGWV NS4B HCV PMID:34811538 tetramer-sort yes amplicon-seq Naive T cells T1D T1D_1 chip0420_114862 PBMC +1735 CASRAGAGDTQYF TRBV10-2*01 TRBJ2-3*01 HLA-A*02:01 B2M MHCI GLCTLVAML BLMF1 EBV PMID:34811538 tetramer-sort yes amplicon-seq effector T cells T1D T1D_2 chip0420_763536 PBMC +1737 CAVIDQFYF TRAV12-2*01 TRAJ49*01 CASSLASAEAFF TRBV7-9*01 TRBJ1-1*01 HLA-A*02:01 B2M MHCI LLAGIGTVPI PGT HomoSapiens PMID:34811538 tetramer-sort yes amplicon-seq Naive T cells T1D T1D_1 chip0420_616802 PBMC +1738 CATQQGRDSQPQHF TRBV28*01 TRBJ1-5*01 HLA-A*02:01 B2M MHCI GLCTLVAML BLMF1 EBV PMID:34811538 tetramer-sort yes amplicon-seq effector memory T cells T1D T1D_1 chip0420_241088 PBMC +1740 CASSVYGFGANVLTF TRBV19*01 TRBJ2-6*01 HLA-A*02:01 B2M MHCI GILGFVFTL M1 InfluenzaA PMID:34811538 tetramer-sort yes amplicon-seq Naive T cells T1D T1D_2 chip0420_274473 PBMC +1741 CSVGGSFYGYTF TRBV29-1*01 TRBJ1-2*01 HLA-A*02:01 B2M MHCI GLCTLVAML BLMF1 EBV PMID:34811538 tetramer-sort yes amplicon-seq effector memory T cells T1D T1D_2 chip0420_142079 PBMC +1743 CSVDQRTGQKKNYGYTF TRBV29-1*01 TRBJ1-2*01 HLA-A*02:01 B2M MHCI GLCTLVAML BLMF1 EBV PMID:34811538 tetramer-sort yes amplicon-seq effector memory T cells T1D T1D_2 chip0420_17413 PBMC +1744 CVVNGRDNSYKLIF TRAV12-1*01 TRAJ12*01 CASSSGLVAPGELFF TRBV2*01 TRBJ2-2*01 HLA-A*02:01 B2M MHCI GLCTLVAML BLMF1 EBV PMID:34811538 tetramer-sort yes amplicon-seq effector memory T cells T1D T1D_2 chip0420_768908 PBMC +1745 CDLRQHFVF TRAV29/DV5*01 TRAJ26*01 CASNLAGTNEQFF TRBV9*01 TRBJ2-1*01 HLA-A*02:01 B2M MHCI GLCTLVAML BLMF1 EBV PMID:34811538 tetramer-sort yes amplicon-seq effector T cells T1D T1D_2 chip0420_773313 PBMC +1746 CASSSDGMNTEAFF TRBV10-2*01 TRBJ1-1*01 HLA-A*02:01 B2M MHCI CLGGLLTMV LMP2A EBV PMID:34811538 tetramer-sort yes amplicon-seq central memory T cells T1D T1D_2 chip0420_665608 PBMC +1747 CAVRDWEGF TRAV3*01 TRAJ34*01 HLA-B*08:01 B2M MHCI RAKFKQLL BZLF1 EBV PMID:34811538 tetramer-sort yes amplicon-seq effector memory T cells T1D T1D_3 chip0420_580963 PBMC +1748 CASSDS??gGLHKFF TRBV13*01 TRBJ2-1*01 HLA-A*02:01 B2M MHCI ALAGIGILTV MART1 HomoSapiens PMID:34811538 tetramer-sort yes amplicon-seq Naive T cells T1D T1D_1 chip0420_229406 PBMC +1749 CSVGSRGTNEKLFF TRBV29-1*01 TRBJ1-4*01 HLA-A*02:01 B2M MHCI GLCTLVAML BLMF1 EBV PMID:34811538 tetramer-sort yes amplicon-seq effector memory T cells T1D T1D_1 chip0420_869045 PBMC +1750 CSVGGTFYGYTF TRBV29-1*01 TRBJ1-2*01 HLA-A*02:01 B2M MHCI GLCTLVAML BLMF1 EBV PMID:34811538 tetramer-sort yes amplicon-seq effector T cells T1D T1D_2 chip0420_166288 PBMC +1752 CSSQEGGYGYTF TRBV29-1*01 TRBJ1-2*01 HLA-A*02:01 B2M MHCI GLCTLVAML BLMF1 EBV PMID:34811538 tetramer-sort yes amplicon-seq effector memory T cells T1D T1D_2 chip0420_743628 PBMC +1753 CASRMGAGDTQYF TRBV10-2*01 TRBJ2-3*01 HLA-A*02:01 B2M MHCI GLCTLVAML BLMF1 EBV PMID:34811538 tetramer-sort yes amplicon-seq effector memory T cells T1D T1D_2 chip0420_580830 PBMC +1754 CASSSLRGSNQPQHF TRBV28*01 TRBJ1-5*01 HLA-A*02:01 B2M MHCI YVLDHLIVV BRLF1 EBV PMID:34811538 tetramer-sort yes amplicon-seq effector memory T cells T1D T1D_2 chip0420_810816 PBMC +1755 CAVKDTDKLIF TRAV8-1*01 TRAJ34*01 HLA-A*02:01 B2M MHCI YVLDHLIVV BRLF1 EBV PMID:34811538 tetramer-sort yes amplicon-seq transitional T cells between effector and memory populations T1D T1D_2 chip0420_49810 PBMC +1756 CVVNPFag??gaYRTLTF TRAV12-1*01 TRAJ11*01 HLA-A*02:01 B2M MHCI YVLDHLIVV BRLF1 EBV PMID:34811538 tetramer-sort yes amplicon-seq effector memory T cells T1D T1D_2 chip0420_62366 PBMC +1757 CSVGTGGTNEKLFF TRBV29-1*01 TRBJ1-4*01 HLA-A*02:01 B2M MHCI GLCTLVAML BLMF1 EBV PMID:34811538 tetramer-sort yes amplicon-seq effector memory T cells T1D T1D_2 chip0420_882310 PBMC +1758 CAVHDTDKLIF TRAV8-1*01 TRAJ34*01 HLA-A*02:01 B2M MHCI YVLDHLIVV BRLF1 EBV PMID:34811538 tetramer-sort yes amplicon-seq effector memory T cells T1D T1D_2 chip0420_174250 PBMC +1759 CASSFGQGSEKLFF TRBV27*01 TRBJ1-4*01 HLA-A*02:01 B2M MHCI GILGFVFTL M1 InfluenzaA PMID:34811538 tetramer-sort yes amplicon-seq transitional T cells between effector and memory populations T1D T1D_1 chip0420_784939 PBMC +1760 CASLTPGASKIIF TRAV8-6*01 TRAJ3*01 CASSSGLVAPGELFF TRBV2*01 TRBJ2-2*01 HLA-A*02:01 B2M MHCI GLCTLVAML BLMF1 EBV PMID:34811538 tetramer-sort yes amplicon-seq effector memory T cells T1D T1D_2 chip0420_681681 PBMC +1761 CVVNGRDSSYKLIF TRAV12-1*01 TRAJ12*01 CASSSGLVAPGELFF TRBV2*01 TRBJ2-2*01 HLA-A*02:01 B2M MHCI GLCTLVAML BLMF1 EBV PMID:34811538 tetramer-sort yes amplicon-seq effector memory T cells T1D T1D_2 chip0420_394280 PBMC +1762 CSVGTGGTNEKLFF TRBV29-1*01 TRBJ1-4*01 HLA-A*02:01 B2M MHCI GLCTLVAML BLMF1 EBV PMID:34811538 tetramer-sort yes amplicon-seq effector T cells T1D T1D_2 chip0420_354643 PBMC +1763 CAVNYDKAAGNKLTF TRAV12-2*01 TRAJ17*01 CASSIGSGEQFF TRBV19*01 TRBJ2-1*01 HLA-A*02:01 B2M MHCI GILGFVFTL M1 InfluenzaA PMID:34811538 tetramer-sort yes amplicon-seq transitional T cells between effector and memory populations T1D T1D_1 chip0420_256088 PBMC +1764 CAENRYGTLPF TRAV13-2*01,TRAV5*01 TRAJ11*01 HLA-A*02:01 B2M MHCI GLCTLVAML BLMF1 EBV PMID:34811538 tetramer-sort yes amplicon-seq effector memory T cells T1D T1D_2 chip0420_228298 PBMC +1765 CASSPSTag?RCGETQYF TRBV3-1*01 TRBJ2-5*01 HLA-A*02:01 B2M MHCI YVLDHLIVV BRLF1 EBV PMID:34811538 tetramer-sort yes amplicon-seq effector T cells T1D T1D_2 chip0420_864030 PBMC +1766 CSVGSRGTNEKLFF TRBV29-1*01 TRBJ1-4*01 HLA-A*02:01 B2M MHCI GLCTLVAML BLMF1 EBV PMID:34811538 tetramer-sort yes amplicon-seq effector memory T cells T1D T1D_1 chip0420_705074 PBMC +1768 CASSQDGTRVGEQFF TRBV3-1*01 TRBJ2-1*01 HLA-A*02:01 B2M MHCI LLAGIGTVPI PGT HomoSapiens PMID:34811538 tetramer-sort yes amplicon-seq Naive T cells T1D T1D_1 chip0420_683684 PBMC +1769 CATQQGRDSQPQHF TRBV28*01 TRBJ1-5*01 HLA-A*02:01 B2M MHCI GLCTLVAML BLMF1 EBV PMID:34811538 tetramer-sort yes amplicon-seq effector memory T cells T1D T1D_1 chip0420_267519 PBMC +1770 CVVNGKDSSYKLIF TRAV12-1*01 TRAJ12*01 CASSGGAVAPSEQFF TRBV2*01 TRBJ2-1*01 HLA-A*02:01 B2M MHCI GLCTLVAML BLMF1 EBV PMID:34811538 tetramer-sort yes amplicon-seq effector memory T cells T1D T1D_2 chip0420_240694 PBMC +1773 CASSQSPGGTQYF TRBV14*01 TRBJ2-3*01 HLA-A*02:01 B2M MHCI GLCTLVAML BLMF1 EBV PMID:34811538 tetramer-sort yes amplicon-seq effector memory T cells T1D T1D_1 chip0420_864558 PBMC +1774 CASSTGQLSNTGELFF TRBV9*01 TRBJ2-2*01 HLA-A*02:01 B2M MHCI GLCTLVAML BLMF1 EBV PMID:34811538 tetramer-sort yes amplicon-seq effector memory T cells T1D T1D_1 chip0420_804295 PBMC +1777 CAVEPGNSPF TRAV12-2*01 TRAJ27*01 CASSPQAGGSVDTQYF TRBV7-8*01 TRBJ2-3*01 HLA-A*02:01 B2M MHCI LLAGIGTVPI PGT HomoSapiens PMID:34811538 tetramer-sort yes amplicon-seq Naive T cells T1D T1D_1 chip0420_579564 PBMC +1778 CASSTGQLSNTGELFF TRBV9*01 TRBJ2-2*01 HLA-A*02:01 B2M MHCI GLCTLVAML BLMF1 EBV PMID:34811538 tetramer-sort yes amplicon-seq effector T cells T1D T1D_1 chip0420_808236 PBMC +1779 CSVGTGGTNEKLFF TRBV29-1*01 TRBJ1-4*01 HLA-A*02:01 B2M MHCI GLCTLVAML BLMF1 EBV PMID:34811538 tetramer-sort yes amplicon-seq effector T cells T1D T1D_2 chip0420_757504 PBMC +1780 CASRMGAGDTQYF TRBV10-2*01 TRBJ2-3*01 HLA-A*02:01 B2M MHCI GLCTLVAML BLMF1 EBV PMID:34811538 tetramer-sort yes amplicon-seq effector memory T cells T1D T1D_2 chip0420_302047 PBMC +1781 CASSEAFLADNEQFF TRBV6-4*01 TRBJ2-1*01 HLA-A*02:01 B2M MHCI YVLDHLIVV BRLF1 EBV PMID:34811538 tetramer-sort yes amplicon-seq effector memory T cells T1D T1D_1 chip0420_547803 PBMC +1782 CSVGTGGTNEKLFF TRBV29-1*01 TRBJ1-4*01 HLA-A*02:01 B2M MHCI GLCTLVAML BLMF1 EBV PMID:34811538 tetramer-sort yes amplicon-seq effector memory T cells T1D T1D_2 chip0420_76602 PBMC +1783 CAMSLYQGGSEKLVF TRAV12-3*01 TRAJ57*01 CASSETNVNTEAFF TRBV10-2*01 TRBJ1-1*01 HLA-A*02:01 B2M MHCI GLCTLVAML BLMF1 EBV PMID:34811538 tetramer-sort yes amplicon-seq effector memory T cells T1D T1D_2 chip0420_134906 PBMC +1784 CASSPVSGSTYEQYF TRBV3-1*01 TRBJ2-7*01 HLA-A*02:01 B2M MHCI GLCTLVAML BLMF1 EBV PMID:34811538 tetramer-sort yes amplicon-seq effector T cells T1D T1D_1 chip0420_112174 PBMC +1785 CGTQENDSWGKLQF TRAV30*01 TRAJ24*01 CASSVRAGETQYF TRBV19*01 TRBJ2-5*01 HLA-A*02:01 B2M MHCI GILGFVFTL M1 InfluenzaA PMID:34811538 tetramer-sort yes amplicon-seq transitional T cells between effector and memory populations T1D T1D_1 chip0420_884463 PBMC +1786 CASSPSTSGSGETQYF TRBV3-1*01 TRBJ2-5*01 HLA-A*02:01 B2M MHCI YVLDHLIVV BRLF1 EBV PMID:34811538 tetramer-sort yes amplicon-seq effector memory T cells T1D T1D_2 chip0420_731717 PBMC +1787 CSVGGSFYGYTF TRBV29-1*01 TRBJ1-2*01 HLA-A*02:01 B2M MHCI GLCTLVAML BLMF1 EBV PMID:34811538 tetramer-sort yes amplicon-seq effector memory T cells T1D T1D_2 chip0420_606150 PBMC +1788 CAMSRSNFGNEKLTF TRAV12-3*01 TRAJ48*01 HLA-A*02:01 B2M MHCI LLAGIGTVPI PGT HomoSapiens PMID:34811538 tetramer-sort yes amplicon-seq Naive T cells T1D T1D_1 chip0420_364826 PBMC +1789 CVVNGRDSSYKLIF TRAV12-1*01 TRAJ12*01 CASSSGLVAPGELFF TRBV2*01 TRBJ2-2*01 HLA-A*02:01 B2M MHCI GLCTLVAML BLMF1 EBV PMID:34811538 tetramer-sort yes amplicon-seq effector T cells T1D T1D_2 chip0420_855606 PBMC +1790 CASSQSPGGTQYF TRBV14*01 TRBJ2-3*01 HLA-A*02:01 B2M MHCI GLCTLVAML BLMF1 EBV PMID:34811538 tetramer-sort yes amplicon-seq effector memory T cells T1D T1D_1 chip0420_733227 PBMC +1792 CASSELAEAPYEQFF TRBV6-1*01 TRBJ2-1*01 HLA-A*02:01 B2M MHCI CINGVCWTV NS3 HCV PMID:34811538 tetramer-sort yes amplicon-seq Naive T cells T1D T1D_1 chip0420_849670 PBMC +1793 CAVARSL*g?aGRLGTLLF TRAV2*01 TRAJ42*01 CASSLFSSEQFF TRBV28*01 TRBJ2-1*01 HLA-A*02:01 B2M MHCI YVLDHLIVV BRLF1 EBV PMID:34811538 tetramer-sort yes amplicon-seq effector memory T cells T1D T1D_1 chip0420_430409 PBMC +1794 CVFSGGYLSVTF TRAV12-1*01 TRAJ13*01 CASSVGQGVAEQYF TRBV2*01 TRBJ2-7*01 HLA-A*02:01 B2M MHCI LLAGIGTVPI PGT HomoSapiens PMID:34811538 tetramer-sort yes amplicon-seq Naive T cells T1D T1D_1 chip0420_207659 PBMC +1795 CASSYGQGMDIQYF TRBV27*01 TRBJ2-4*01 HLA-A*02:01 B2M MHCI GILGFVFTL M1 InfluenzaA PMID:34811538 tetramer-sort yes amplicon-seq transitional T cells between effector and memory populations T1D T1D_1 chip0420_557704 PBMC +1796 CAASLGWa?tSSSNLIF TRAV2*01 TRAJ12*01 CASSLIEGGYNSGANVLTF TRBV7-6*01 TRBJ2-6*01 HLA-A*02:01 B2M MHCI YVLDHLIVV BRLF1 EBV PMID:34811538 tetramer-sort yes amplicon-seq transitional T cells between effector and memory populations T1D T1D_2 chip0420_158160 PBMC +1797 CASLTPGASKIIF TRAV8-6*01 TRAJ3*01 CASSSGLVAPGELFF TRBV2*01 TRBJ2-2*01 HLA-A*02:01 B2M MHCI GLCTLVAML BLMF1 EBV PMID:34811538 tetramer-sort yes amplicon-seq effector T cells T1D T1D_2 chip0420_130001 PBMC +1799 CASSPHLGAAAEQYF TRBV19*01 TRBJ2-7*01 HLA-A*02:01 B2M MHCI YVLDHLIVV BRLF1 EBV PMID:34811538 tetramer-sort yes amplicon-seq effector memory T cells T1D T1D_1 chip0420_714943 PBMC +1800 CASSHALENTGELFF TRBV3-1*01 TRBJ2-2*01 HLA-A*02:01 B2M MHCI YVLDHLIVV BRLF1 EBV PMID:34811538 tetramer-sort yes amplicon-seq effector T cells T1D T1D_2 chip0420_306829 PBMC +1801 CATQQGRDSQPQHF TRBV28*01 TRBJ1-5*01 HLA-A*02:01 B2M MHCI GLCTLVAML BLMF1 EBV PMID:34811538 tetramer-sort yes amplicon-seq effector memory T cells T1D T1D_1 chip0420_179632 PBMC +1802 CASSEWTGYQPQHF TRBV6-1*01 TRBJ1-5*01 HLA-A*02:01 B2M MHCI GLCTLVAML BLMF1 EBV PMID:34811538 tetramer-sort yes amplicon-seq effector memory T cells T1D T1D_2 chip0420_849701 PBMC +1803 CASLTPGASKIIF TRAV8-6*01 TRAJ3*01 CASSSGLVAPGELFF TRBV2*01 TRBJ2-2*01 HLA-A*02:01 B2M MHCI GLCTLVAML BLMF1 EBV PMID:34811538 tetramer-sort yes amplicon-seq effector memory T cells T1D T1D_2 chip0420_265250 PBMC +1804 CASSFGAGELFF TRBV19*01 TRBJ2-2*01 HLA-A*02:01 B2M MHCI GILGFVFTL M1 InfluenzaA PMID:34811538 tetramer-sort yes amplicon-seq transitional T cells between effector and memory populations T1D T1D_1 chip0420_532426 PBMC +1805 CASSINGGRRDGYTF TRBV19*01 TRBJ1-2*01 HLA-A*02:01 B2M MHCI GILGFVFTL M1 InfluenzaA PMID:34811538 tetramer-sort yes amplicon-seq transitional T cells between effector and memory populations T1D T1D_1 chip0420_348926 PBMC +1806 CSVGGTFYGYTF TRBV29-1*01 TRBJ1-2*01 HLA-A*02:01 B2M MHCI GLCTLVAML BLMF1 EBV PMID:34811538 tetramer-sort yes amplicon-seq effector T cells T1D T1D_2 chip0420_13304 PBMC +1807 CSARGVTGSGNTIYF TRBV20-1*01 TRBJ1-3*01 HLA-A*02:01 B2M MHCI LLAGIGTVPI PGT HomoSapiens PMID:34811538 tetramer-sort yes amplicon-seq Naive T cells T1D T1D_1 chip0420_375568 PBMC +1809 CASSETASQPQHF TRBV6-1*01 TRBJ1-5*01 HLA-A*02:01 B2M MHCI YVLDHLIVV BRLF1 EBV PMID:34811538 tetramer-sort yes amplicon-seq transitional T cells between effector and memory populations T1D T1D_1 chip0420_252818 PBMC +1810 CSVGTGGTNEKLFF TRBV29-1*01 TRBJ1-4*01 HLA-A*02:01 B2M MHCI GLCTLVAML BLMF1 EBV PMID:34811538 tetramer-sort yes amplicon-seq transitional T cells between effector and memory populations T1D T1D_2 chip0420_172491 PBMC +1811 CAVPLGGFc?tGGYNKLIF TRAV20*01 TRAJ4*01 HLA-A*02:01 B2M MHCI GILGFVFTL M1 InfluenzaA PMID:34811538 tetramer-sort yes amplicon-seq transitional T cells between effector and memory populations T1D T1D_1 chip0420_91965 PBMC +1812 CSVGSRGTNEKLFF TRBV29-1*01 TRBJ1-4*01 HLA-A*02:01 B2M MHCI GLCTLVAML BLMF1 EBV PMID:34811538 tetramer-sort yes amplicon-seq effector memory T cells T1D T1D_1 chip0420_781722 PBMC +1814 CAWSGTGLGQPQHF TRBV30*01 TRBJ1-5*01 HLA-A*02:01 B2M MHCI LLAGIGTVPI PGT HomoSapiens PMID:34811538 tetramer-sort yes amplicon-seq Naive T cells T1D T1D_1 chip0420_551917 PBMC +1816 CAVRDDKIIF TRAV12-2*01 TRAJ30*01 CASSPRAAGGLETQYF TRBV6-1*01 TRBJ2-5*01 HLA-A*02:01 B2M MHCI LLAGIGTVPI PGT HomoSapiens PMID:34811538 tetramer-sort yes amplicon-seq Naive T cells T1D T1D_1 chip0420_210465 PBMC +1818 CGPAEPNDYKLSF TRAV30*01 TRAJ20*01 CASSTGQLSNTGELFF TRBV9*01 TRBJ2-2*01 HLA-A*02:01 B2M MHCI GLCTLVAML BLMF1 EBV PMID:34811538 tetramer-sort yes amplicon-seq effector memory T cells T1D T1D_1 chip0420_329699 PBMC +1819 CVVNGKDSSYKLIF TRAV12-1*01 TRAJ12*01 CASSGGAVAPSEQFF TRBV2*01 TRBJ2-1*01 HLA-A*02:01 B2M MHCI GLCTLVAML BLMF1 EBV PMID:34811538 tetramer-sort yes amplicon-seq effector memory T cells T1D T1D_2 chip0420_859432 PBMC +1821 CASSLLAGVEQYF TRBV19*01 TRBJ2-7*01 HLA-A*02:01 B2M MHCI GILGFVFTL M1 InfluenzaA PMID:34811538 tetramer-sort yes amplicon-seq Naive T cells T1D T1D_1 chip0420_865139 PBMC +1822 CVVNVTYNFNKFYF TRAV12-1*01 TRAJ21*01 CASSAGTVAPGELFF TRBV2*01 TRBJ2-2*01 HLA-A*02:01 B2M MHCI GLCTLVAML BLMF1 EBV PMID:34811538 tetramer-sort yes amplicon-seq effector memory T cells T1D T1D_1 chip0420_669029 PBMC +1823 YADKPCag??gtNQKVTF TRAV5*01 TRAJ13*01 CSVGTGGTNEKLFF TRBV29-1*01 TRBJ1-4*01 HLA-A*02:01 B2M MHCI GLCTLVAML BLMF1 EBV PMID:34811538 tetramer-sort yes amplicon-seq effector memory T cells T1D T1D_2 chip0420_6568 PBMC +1824 CALKDTDKLIF TRAV16*01 TRAJ34*01 HLA-A*02:01 B2M MHCI YVLDHLIVV BRLF1 EBV PMID:34811538 tetramer-sort yes amplicon-seq effector memory T cells T1D T1D_1 chip0420_737270 PBMC +1825 CASSSRSTDTQYF TRBV19*01 TRBJ2-3*01 HLA-A*02:01 B2M MHCI GILGFVFTL M1 InfluenzaA PMID:34811538 tetramer-sort yes amplicon-seq transitional T cells between effector and memory populations T1D T1D_1 chip0420_833349 PBMC +1826 CATSDWLTTEQYF TRBV24-1*01 TRBJ2-7*01 HLA-A*02:01 B2M MHCI YVLDHLIVV BRLF1 EBV PMID:34811538 tetramer-sort yes amplicon-seq effector T cells T1D T1D_1 chip0420_738577 PBMC +1827 CGTEEPNDYKLSF TRAV30*01 TRAJ20*01 HLA-A*02:01 B2M MHCI GLCTLVAML BLMF1 EBV PMID:34811538 tetramer-sort yes amplicon-seq effector T cells T1D T1D_1 chip0420_103083 PBMC +1828 CVVNGRDSSYKLIF TRAV12-1*01 TRAJ12*01 CASSSGLVAPGELFF TRBV2*01 TRBJ2-2*01 HLA-A*02:01 B2M MHCI GLCTLVAML BLMF1 EBV PMID:34811538 tetramer-sort yes amplicon-seq effector T cells T1D T1D_2 chip0420_30606 PBMC +1830 CAVDPWGNQFYF TRAV39*01 TRAJ49*01 CASRAGAGDTQYF TRBV10-2*01 TRBJ2-3*01 HLA-A*02:01 B2M MHCI GLCTLVAML BLMF1 EBV PMID:34811538 tetramer-sort yes amplicon-seq effector memory T cells T1D T1D_2 chip0420_683265 PBMC +1831 CASLTPGASKIIF TRAV8-6*01 TRAJ3*01 HLA-A*02:01 B2M MHCI GLCTLVAML BLMF1 EBV PMID:34811538 tetramer-sort yes amplicon-seq effector memory T cells T1D T1D_2 chip0420_662083 PBMC +1833 CASRPGTSWNEQFF TRBV12-3*01,TRBV12-4*01 TRBJ2-1*01 HLA-A*02:01 B2M MHCI RQFGPDWIVA ADH HomoSapiens PMID:34811538 tetramer-sort yes amplicon-seq Naive T cells T1D T1D_1 chip0420_132827 PBMC +1834 CAVNYDKAAGNKLTF TRAV12-2*01 TRAJ17*01 CASSIGSGEQFF TRBV19*01 TRBJ2-1*01 HLA-A*02:01 B2M MHCI GILGFVFTL M1 InfluenzaA PMID:34811538 tetramer-sort yes amplicon-seq transitional T cells between effector and memory populations T1D T1D_1 chip0420_684711 PBMC +1836 CASSSGLVAPGELFF TRBV2*01 TRBJ2-2*01 HLA-A*02:01 B2M MHCI GLCTLVAML BLMF1 EBV PMID:34811538 tetramer-sort yes amplicon-seq effector memory T cells T1D T1D_2 chip0420_30140 PBMC +1838 CGPEEPNDYKLSF TRAV30*01 TRAJ20*01 CASSPGQLSNTGELFF TRBV9*01 TRBJ2-2*01 HLA-A*02:01 B2M MHCI GLCTLVAML BLMF1 EBV PMID:34811538 tetramer-sort yes amplicon-seq effector T cells T1D T1D_1 chip0420_657495 PBMC +1839 CASSPVSGSTYEQYF TRBV3-1*01 TRBJ2-7*01 HLA-A*02:01 B2M MHCI GLCTLVAML BLMF1 EBV PMID:34811538 tetramer-sort yes amplicon-seq effector memory T cells T1D T1D_1 chip0420_850355 PBMC +1840 CSVGTGGTNEKLFF TRBV29-1*01 TRBJ1-4*01 HLA-A*02:01 B2M MHCI GLCTLVAML BLMF1 EBV PMID:34811538 tetramer-sort yes amplicon-seq effector memory T cells T1D T1D_2 chip0420_393491 PBMC +1841 CSVGGSFYGYTF TRBV29-1*01 TRBJ1-2*01 HLA-A*02:01 B2M MHCI GLCTLVAML BLMF1 EBV PMID:34811538 tetramer-sort yes amplicon-seq effector memory T cells T1D T1D_2 chip0420_346779 PBMC +1842 CASNLAGNNEQFF TRBV9*01 TRBJ2-1*01 HLA-A*02:01 B2M MHCI GLCTLVAML BLMF1 EBV PMID:34811538 tetramer-sort yes amplicon-seq effector memory T cells T1D T1D_2 chip0420_239970 PBMC +1843 CGTQENDSWGKLQF TRAV30*01 TRAJ24*01 CASSVGAGEAQCF TRBV19*01 TRBJ2-5*01 HLA-A*02:01 B2M MHCI GILGFVFTL M1 InfluenzaA PMID:34811538 tetramer-sort yes amplicon-seq transitional T cells between effector and memory populations T1D T1D_1 chip0420_718589 PBMC +1844 CASSYPKct?EAYNEQFF TRBV6-5*01 TRBJ2-1*01 HLA-A*02:01 B2M MHCI GLCTLVAML BLMF1 EBV PMID:34811538 tetramer-sort yes amplicon-seq effector memory T cells T1D T1D_1 chip0420_577611 PBMC +1845 CATDGASGYSTLTF TRAV17*01 TRAJ11*01 CASSVQGNSYEQYF TRBV12-3*01,TRBV12-4*01 TRBJ2-7*01 HLA-A*02:01 B2M MHCI FLYALALLL LMP2 EBV PMID:34811538 tetramer-sort yes amplicon-seq central memory T cells T1D T1D_1 chip0420_797274 PBMC +1846 CASSIRSTDTQYF TRBV19*01 TRBJ2-3*01 HLA-A*02:01 B2M MHCI GILGFVFTL M1 InfluenzaA PMID:34811538 tetramer-sort yes amplicon-seq transitional T cells between effector and memory populations T1D T1D_1 chip0420_744593 PBMC +1848 CAMSLSNFGNEKLTF TRAV12-3*01 TRAJ48*01 HLA-A*02:01 B2M MHCI LLAGIGTVPI PGT HomoSapiens PMID:34811538 tetramer-sort yes amplicon-seq Naive T cells healthy healthy_2 chip0420_818000 PBMC +1850 CASSTGQLSNTGELFF TRBV9*01 TRBJ2-2*01 HLA-A*02:01 B2M MHCI GLCTLVAML BLMF1 EBV PMID:34811538 tetramer-sort yes amplicon-seq effector T cells T1D T1D_1 chip0420_227055 PBMC +1851 CSAIDTSGTGGYEQYF TRBV20-1*01 TRBJ2-7*01 HLA-A*02:01 B2M MHCI LLFNILGGWV NS4B HCV PMID:34811538 tetramer-sort yes amplicon-seq effector memory T cells T1D T1D_1 chip0420_108610 PBMC +1852 CVVDDWGKLQF TRAV12-1*01 TRAJ24*01 HLA-A*02:01 B2M MHCI LLAGIGTVPI PGT HomoSapiens PMID:34811538 tetramer-sort yes amplicon-seq Naive T cells T1D T1D_1 chip0420_490412 PBMC +1853 CAESYDGYALNF TRAV5*01 TRAJ41*01 HLA-A*02:01 B2M MHCI GLCTLVAML BLMF1 EBV PMID:34811538 tetramer-sort yes amplicon-seq effector memory T cells T1D T1D_2 chip0420_126098 PBMC +1854 CGPEEPNDYKLSF TRAV30*01 TRAJ20*01 HLA-A*02:01 B2M MHCI GLCTLVAML BLMF1 EBV PMID:34811538 tetramer-sort yes amplicon-seq effector T cells T1D T1D_1 chip0420_83082 PBMC +1855 CASNLAGNNEQFF TRBV9*01 TRBJ2-1*01 HLA-A*02:01 B2M MHCI GLCTLVAML BLMF1 EBV PMID:34811538 tetramer-sort yes amplicon-seq effector memory T cells T1D T1D_2 chip0420_754010 PBMC +1856 CAVDPWGNQFYF TRAV39*01 TRAJ49*01 CATQQGRDSQPQHF TRBV28*01 TRBJ1-5*01 HLA-A*02:01 B2M MHCI GLCTLVAML BLMF1 EBV PMID:34811538 tetramer-sort yes amplicon-seq effector T cells T1D T1D_1 chip0420_192807 PBMC +1857 CAMRDDRDDKIIF TRAV3*01 TRAJ30*01 CASSLNAGEWYGYTF TRBV11-2*01 TRBJ1-2*01 HLA-A*02:01 B2M MHCI GLCTLVAML BLMF1 EBV PMID:34811538 tetramer-sort yes amplicon-seq effector memory T cells T1D T1D_2 chip0420_667662 PBMC +1858 CAEKAWgg??gtYQNVTF TRAV5*01 TRAJ13*01 CSVGTGGTNEKLFF TRBV29-1*01 TRBJ1-4*01 HLA-A*02:01 B2M MHCI GLCTLVAML BLMF1 EBV PMID:34811538 tetramer-sort yes amplicon-seq effector memory T cells T1D T1D_2 chip0420_617881 PBMC +1859 CASSLGQGGSGNTIYF TRBV7-6*01 TRBJ1-3*01 HLA-A*02:01 B2M MHCI LLAGIGTVPI PGT HomoSapiens PMID:34811538 tetramer-sort yes amplicon-seq natural killer-like T cells T1D T1D_1 chip0420_124390 PBMC +1860 CASRALLGSNQPQHF TRBV19*01 TRBJ1-5*01 HLA-A*02:01 B2M MHCI YVLDHLIVV BRLF1 EBV PMID:34811538 tetramer-sort yes amplicon-seq effector memory T cells T1D T1D_2 chip0420_482358 PBMC +1861 CASSSGAYGYTF TRBV19*01 TRBJ1-2*01 HLA-A*02:01 B2M MHCI GILGFVFTL M1 InfluenzaA PMID:34811538 tetramer-sort yes amplicon-seq transitional T cells between effector and memory populations T1D T1D_1 chip0420_7612 PBMC +1862 CASSPVSGSTYEQYF TRBV3-1*01 TRBJ2-7*01 HLA-A*02:01 B2M MHCI GLCTLVAML BLMF1 EBV PMID:34811538 tetramer-sort yes amplicon-seq effector memory T cells T1D T1D_1 chip0420_791864 PBMC +1863 CSVGTGGTNEKLFF TRBV29-1*01 TRBJ1-4*01 HLA-A*02:01 B2M MHCI GLCTLVAML BLMF1 EBV PMID:34811538 tetramer-sort yes amplicon-seq effector T cells T1D T1D_2 chip0420_636857 PBMC +1864 CAVPVYDKIIF TRAV8-1*01 TRAJ30*01 CASSPDQTSSYNEQFF TRBV27*01 TRBJ2-1*01 HLA-A*02:01 B2M MHCI YVLDHLIVV BRLF1 EBV PMID:34811538 tetramer-sort yes amplicon-seq effector memory T cells T1D T1D_1 chip0420_337274 PBMC +1865 CAAYAGNLLTF TRAV29/DV5*01 TRAJ39*01 CASRMGAGDTQYF TRBV10-2*01 TRBJ2-3*01 HLA-A*02:01 B2M MHCI GLCTLVAML BLMF1 EBV PMID:34811538 tetramer-sort yes amplicon-seq effector memory T cells T1D T1D_2 chip0420_803902 PBMC +1866 CSVGSRGTNEKLFF TRBV29-1*01 TRBJ1-4*01 HLA-A*02:01 B2M MHCI GLCTLVAML BLMF1 EBV PMID:34811538 tetramer-sort yes amplicon-seq effector memory T cells T1D T1D_1 chip0420_823740 PBMC +1867 CAMRESRGSNYQLIW TRAV14/DV4*01 TRAJ33*01 CASSVEPSLLHQPQHF TRBV9*01 TRBJ1-5*01 HLA-A*02:01 B2M MHCI GLCTLVAML BLMF1 EBV PMID:34811538 tetramer-sort yes amplicon-seq effector memory T cells T1D T1D_2 chip0420_649511 PBMC +1868 CASSSGQVLPNEQFF TRBV2*01 TRBJ2-1*01 HLA-A*02:01 B2M MHCI GLCTLVAML BLMF1 EBV PMID:34811538 tetramer-sort yes amplicon-seq effector memory T cells T1D T1D_1 chip0420_610919 PBMC +1869 CASLTPGASKLIF TRAV8-6*01 TRAJ3*01 HLA-A*02:01 B2M MHCI GLCTLVAML BLMF1 EBV PMID:34811538 tetramer-sort yes amplicon-seq effector memory T cells T1D T1D_2 chip0420_401106 PBMC +1870 CASRAGAGDTQYF TRBV10-2*01 TRBJ2-3*01 HLA-A*02:01 B2M MHCI GLCTLVAML BLMF1 EBV PMID:34811538 tetramer-sort yes amplicon-seq transitional T cells between effector and memory populations T1D T1D_2 chip0420_379360 PBMC +1872 CASSSGYFNTGELFF TRBV11-2*01 TRBJ2-2*01 HLA-A*02:01 B2M MHCI ALAGIGILTV MART1 HomoSapiens PMID:34811538 tetramer-sort yes amplicon-seq Naive T cells T1D T1D_1 chip0420_112853 PBMC +1874 CSVGTEGTNEKLFF TRBV29-1*01 TRBJ1-4*01 HLA-A*02:01 B2M MHCI GLCTLVAML BLMF1 EBV PMID:34811538 tetramer-sort yes amplicon-seq effector T cells T1D T1D_2 chip0420_484787 PBMC +1875 CSVGGSFYGYTF TRBV29-1*01 TRBJ1-2*01 HLA-A*02:01 B2M MHCI GLCTLVAML BLMF1 EBV PMID:34811538 tetramer-sort yes amplicon-seq effector T cells T1D T1D_2 chip0420_446519 PBMC +1876 CASSQSPGGLAFF TRBV14*01 TRBJ1-1*01 HLA-A*02:01 B2M MHCI GLCTLVAML BLMF1 EBV PMID:34811538 tetramer-sort yes amplicon-seq effector memory T cells T1D T1D_2 chip0420_226288 PBMC +1877 CASSRTGLNTEAFF TRBV18*01 TRBJ1-1*01 HLA-A*02:01 B2M MHCI GILGFVFTL M1 InfluenzaA PMID:34811538 tetramer-sort yes amplicon-seq effector T cells T1D T1D_1 chip0420_103723 PBMC +1878 CASSSGQVLPNEQFF TRBV2*01 TRBJ2-1*01 HLA-A*02:01 B2M MHCI GLCTLVAML BLMF1 EBV PMID:34811538 tetramer-sort yes amplicon-seq effector memory T cells T1D T1D_1 chip0420_876730 PBMC +1879 CGAGEPNDYTLSF TRAV30*01 TRAJ20*01 HLA-A*02:01 B2M MHCI GLCTLVAML BLMF1 EBV PMID:34811538 tetramer-sort yes amplicon-seq effector T cells T1D T1D_1 chip0420_696730 PBMC +1881 CASSQSPGGTQYF TRBV14*01 TRBJ2-3*01 HLA-A*02:01 B2M MHCI GLCTLVAML BLMF1 EBV PMID:34811538 tetramer-sort yes amplicon-seq effector memory T cells T1D T1D_1 chip0420_4858 PBMC +1882 CASSVVGNEQFF TRBV9*01 TRBJ2-1*01 HLA-A*02:01 B2M MHCI GLCTLVAML BLMF1 EBV PMID:34811538 tetramer-sort yes amplicon-seq effector T cells T1D T1D_2 chip0420_575787 PBMC +1883 CATQQGRDSQPQHF TRBV28*01 TRBJ1-5*01 HLA-A*02:01 B2M MHCI GLCTLVAML BLMF1 EBV PMID:34811538 tetramer-sort yes amplicon-seq effector T cells T1D T1D_1 chip0420_256761 PBMC +1884 CALQNTAKLIF TRAV16*01 TRAJ34*01 CASSLSVLSYNEQFF TRBV27*01 TRBJ2-1*01 HLA-A*02:01 B2M MHCI YVLDHLIVV BRLF1 EBV PMID:34811538 tetramer-sort yes amplicon-seq effector memory T cells T1D T1D_2 chip0420_189924 PBMC +1885 CATFPDGSYEQYF TRBV28*01 TRBJ2-7*01 HLA-A*02:01 B2M MHCI YLLEMLWRL LMP1 EBV PMID:34811538 tetramer-sort yes amplicon-seq central memory T cells T1D T1D_1 chip0420_87818 PBMC +1886 CASSQSPGGTQYF TRBV14*01 TRBJ2-3*01 HLA-A*02:01 B2M MHCI GLCTLVAML BLMF1 EBV PMID:34811538 tetramer-sort yes amplicon-seq effector memory T cells T1D T1D_1 chip0420_82127 PBMC +1887 CSVGSRGTNEKLFF TRBV29-1*01 TRBJ1-4*01 HLA-A*02:01 B2M MHCI GLCTLVAML BLMF1 EBV PMID:34811538 tetramer-sort yes amplicon-seq effector memory T cells T1D T1D_1 chip0420_757943 PBMC +1888 CASSSAVLAGGHNEQFF TRBV5-6*01 TRBJ2-1*01 HLA-A*02:01 B2M MHCI LLAGIGTVPI PGT HomoSapiens PMID:34811538 tetramer-sort yes amplicon-seq Naive T cells T1D T1D_2 chip0420_704715 PBMC +1889 CSVGSRGTNEKLFF TRBV29-1*01 TRBJ1-4*01 HLA-A*02:01 B2M MHCI GLCTLVAML BLMF1 EBV PMID:34811538 tetramer-sort yes amplicon-seq effector memory T cells T1D T1D_1 chip0420_440751 PBMC +1890 CASSLGYLGDYGYTF TRBV7-2*01 TRBJ1-2*01 HLA-A*02:01 B2M MHCI LLAGIGTVPI PGT HomoSapiens PMID:34811538 tetramer-sort yes amplicon-seq Naive T cells T1D T1D_1 chip0420_524660 PBMC +1891 CAAYAGNMLTF TRAV29/DV5*01 TRAJ39*01 CASRAGAGDTQYF TRBV10-2*01 TRBJ2-3*01 HLA-A*02:01 B2M MHCI GLCTLVAML BLMF1 EBV PMID:34811538 tetramer-sort yes amplicon-seq effector memory T cells T1D T1D_2 chip0420_376844 PBMC +1892 CASSIRSNTEAFF TRBV19*01 TRBJ1-1*01 HLA-A*02:01 B2M MHCI GILGFVFTL M1 InfluenzaA PMID:34811538 tetramer-sort yes amplicon-seq transitional T cells between effector and memory populations T1D T1D_1 chip0420_19889 PBMC +1893 CSVGTGGTNEKLFF TRBV29-1*01 TRBJ1-4*01 HLA-A*02:01 B2M MHCI GLCTLVAML BLMF1 EBV PMID:34811538 tetramer-sort yes amplicon-seq effector memory T cells T1D T1D_2 chip0420_665500 PBMC +1895 CSVGSRGTNEKLFF TRBV29-1*01 TRBJ1-4*01 HLA-A*02:01 B2M MHCI GLCTLVAML BLMF1 EBV PMID:34811538 tetramer-sort yes amplicon-seq effector memory T cells T1D T1D_1 chip0420_129901 PBMC +1896 CALYNTDKLIF TRAV9-2*01 TRAJ34*01 CATQQGRDSQPQHF TRBV28*01 TRBJ1-5*01 HLA-A*02:01 B2M MHCI GLCTLVAML BLMF1 EBV PMID:34811538 tetramer-sort yes amplicon-seq effector memory T cells T1D T1D_1 chip0420_622552 PBMC +1897 CSVCILAQNYNEQFF TRBV29-1*01 TRBJ2-1*01 HLA-A*02:01 B2M MHCI LLAGIGTVPI PGT HomoSapiens PMID:34811538 tetramer-sort yes amplicon-seq effector T cells T1D T1D_2 chip0420_759880 PBMC +1898 CASRGRAGGTQYC TRBV19*01 TRBJ2-5*01 HLA-A*02:01 B2M MHCI GILGFVFTL M1 InfluenzaA PMID:34811538 tetramer-sort yes amplicon-seq transitional T cells between effector and memory populations T1D T1D_1 chip0420_575003 PBMC +1899 CASSPQGGASEAFF TRBV6-1*01 TRBJ1-1*01 HLA-A*02:01 B2M MHCI FLYALALLL LMP2 EBV PMID:34811538 tetramer-sort yes amplicon-seq central memory T cells T1D T1D_2 chip0420_400776 PBMC +1900 CSVGSRGTNEKLFF TRBV29-1*01 TRBJ1-4*01 HLA-A*02:01 B2M MHCI GLCTLVAML BLMF1 EBV PMID:34811538 tetramer-sort yes amplicon-seq effector memory T cells T1D T1D_1 chip0420_723954 PBMC +1901 CSANDHTYNEQFF TRBV20-1*01 TRBJ2-1*01 HLA-A*02:01 B2M MHCI YVLDHLIVV BRLF1 EBV PMID:34811538 tetramer-sort yes amplicon-seq effector memory T cells T1D T1D_1 chip0420_415228 PBMC +1902 CSVGSRGTNEKLFF TRBV29-1*01 TRBJ1-4*01 HLA-A*02:01 B2M MHCI GLCTLVAML BLMF1 EBV PMID:34811538 tetramer-sort yes amplicon-seq effector T cells T1D T1D_1 chip0420_317931 PBMC +1903 CAISEGTLSSYNEQFF TRAV14/DV4*01 TRAJ50*01 CAISEGTLSSYNEQFF TRBV10-3*01 TRBJ2-1*01 HLA-A*02:01 B2M MHCI YVLDHLIVV BRLF1 EBV PMID:34811538 tetramer-sort yes amplicon-seq effector memory T cells T1D T1D_1 chip0420_87507 PBMC +1904 CASSPVSGSACERFF TRAV29/DV5*01 TRAJ40*01 CASSPVSGSTYEQYF TRBV3-1*01 TRBJ2-7*01 HLA-A*02:01 B2M MHCI GLCTLVAML BLMF1 EBV PMID:34811538 tetramer-sort yes amplicon-seq effector T cells T1D T1D_1 chip0420_878559 PBMC +1906 CASSTLAGGTDTQYF TRBV6-2*01,TRBV6-3*01 TRBJ2-3*01 HLA-A*02:01 B2M MHCI LLAGIGTVPI PGT HomoSapiens PMID:34811538 tetramer-sort yes amplicon-seq Naive T cells T1D T1D_1 chip0420_710756 PBMC +1908 CTSRAGAGDTQYF TRBV10-2*01 TRBJ2-3*01 HLA-A*02:01 B2M MHCI GLCTLVAML BLMF1 EBV PMID:34811538 tetramer-sort yes amplicon-seq effector memory T cells T1D T1D_2 chip0420_769060 PBMC +1909 CSSQEGGYGYTF TRBV29-1*01 TRBJ1-2*01 HLA-A*02:01 B2M MHCI GLCTLVAML BLMF1 EBV PMID:34811538 tetramer-sort yes amplicon-seq effector T cells T1D T1D_2 chip0420_713886 PBMC +1910 CSVGPGGASEELFF TRBV29-1*01 TRBJ1-4*01 HLA-A*02:01 B2M MHCI GLCTLVAML BLMF1 EBV PMID:34811538 tetramer-sort yes amplicon-seq effector memory T cells T1D T1D_2 chip0420_771569 PBMC +1912 CAVKDTDKLIF TRAV8-1*01 TRAJ34*01 HLA-A*02:01 B2M MHCI YVLDHLIVV BRLF1 EBV PMID:34811538 tetramer-sort yes amplicon-seq effector T cells T1D T1D_1 chip0420_651986 PBMC +1913 CVVNKGEac?TNAGKSTF TRAV12-1*01 TRAJ27*01 HLA-A*02:01 B2M MHCI YVLDHLIVV BRLF1 EBV PMID:34811538 tetramer-sort yes amplicon-seq effector memory T cells T1D T1D_2 chip0420_631404 PBMC +1915 CATFPAGSYEQYF TRBV28*01 TRBJ2-7*01 HLA-A*02:01 B2M MHCI YLLEMLWRL LMP1 EBV PMID:34811538 tetramer-sort yes amplicon-seq central memory T cells T1D T1D_1 chip0420_358224 PBMC +1917 CAWRREGVETQYF TRBV30*01 TRBJ2-5*01 HLA-A*02:01 B2M MHCI LLAGIGTVPI PGT HomoSapiens PMID:34811538 tetramer-sort yes amplicon-seq Naive T cells T1D T1D_1 chip0420_120319 PBMC +1919 CSVGTGGTNEKLFF TRBV29-1*01 TRBJ1-4*01 HLA-A*02:01 B2M MHCI GLCTLVAML BLMF1 EBV PMID:34811538 tetramer-sort yes amplicon-seq effector memory T cells T1D T1D_2 chip0420_529332 PBMC +1920 CASSSTSLTGSYEQYF TRBV11-2*01 TRBJ2-7*01 HLA-A*02:01 B2M MHCI RGPGRAFVTI GP160 HIV-1 PMID:34811538 tetramer-sort yes amplicon-seq Naive T cells T1D T1D_1 chip0420_65079 PBMC +1921 CASSINGGRRDGYTF TRBV19*01 TRBJ1-2*01 HLA-A*02:01 B2M MHCI GILGFVFTL M1 InfluenzaA PMID:34811538 tetramer-sort yes amplicon-seq transitional T cells between effector and memory populations T1D T1D_1 chip0420_765622 PBMC +1923 CAESTSGGKLIF TRAV5*01 TRAJ23*01 CSVGTGGTNEKLFF TRBV29-1*01 TRBJ1-4*01 HLA-A*02:01 B2M MHCI GLCTLVAML BLMF1 EBV PMID:34811538 tetramer-sort yes amplicon-seq effector T cells T1D T1D_2 chip0420_878734 PBMC +1924 CATSDPLHWGYTF TRBV24-1*01 TRBJ1-2*01 HLA-A*02:01 B2M MHCI LLAGIGTVPI PGT HomoSapiens PMID:34811538 tetramer-sort yes amplicon-seq effector T cells T1D T1D_2 chip0420_174468 PBMC +1928 CSVGTRGTNEKLFF TRBV29-1*01 TRBJ1-4*01 HLA-A*02:01 B2M MHCI GLCTLVAML BLMF1 EBV PMID:34811538 tetramer-sort yes amplicon-seq effector memory T cells T1D T1D_2 chip0420_351631 PBMC +1929 CVVNGRDSSYKLIF TRAV12-1*01 TRAJ12*01 CASSSGLVAPGELFF TRBV2*01 TRBJ2-2*01 HLA-A*02:01 B2M MHCI GLCTLVAML BLMF1 EBV PMID:34811538 tetramer-sort yes amplicon-seq effector memory T cells T1D T1D_2 chip0420_170593 PBMC +1930 CAAYAGNMLTF TRAV29/DV5*01 TRAJ39*01 CASRAGAGDTQYF TRBV10-2*01 TRBJ2-3*01 HLA-A*02:01 B2M MHCI GLCTLVAML BLMF1 EBV PMID:34811538 tetramer-sort yes amplicon-seq effector memory T cells T1D T1D_2 chip0420_16669 PBMC +1932 CAESTSGGKLIS TRAV5*01 TRAJ23*01 CSVGTGGTNEKLFF TRBV29-1*01 TRBJ1-4*01 HLA-A*02:01 B2M MHCI GLCTLVAML BLMF1 EBV PMID:34811538 tetramer-sort yes amplicon-seq effector memory T cells T1D T1D_2 chip0420_258557 PBMC +1933 CAESTSGGRLIF TRAV5*01 TRAJ23*01 CSVGTGGTNEKLFF TRBV29-1*01 TRBJ1-4*01 HLA-A*02:01 B2M MHCI GLCTLVAML BLMF1 EBV PMID:34811538 tetramer-sort yes amplicon-seq effector memory T cells T1D T1D_2 chip0420_503430 PBMC +1935 CAMSRSNFGNEKLTF TRAV12-3*01 TRAJ48*01 CASSSPGLAGGPDTGELFF TRBV11-1*01 TRBJ2-2*01 HLA-A*02:01 B2M MHCI LLAGIGTVPI PGT HomoSapiens PMID:34811538 tetramer-sort yes amplicon-seq Naive T cells T1D T1D_1 chip0420_871047 PBMC +1936 CAASL*EVg?aGSNYKLTF TRAV23/DV6*01 TRAJ53*01 CSVGSRGTNEKLFF TRBV29-1*01 TRBJ1-4*01 HLA-A*02:01 B2M MHCI GLCTLVAML BLMF1 EBV PMID:34811538 tetramer-sort yes amplicon-seq effector memory T cells T1D T1D_1 chip0420_684363 PBMC +1938 CSAPSGNGYNEQFF TRBV20-1*01 TRBJ2-1*01 HLA-A*02:01 B2M MHCI LLAGIGTVPI PGT HomoSapiens PMID:34811538 tetramer-sort yes amplicon-seq Naive T cells T1D T1D_1 chip0420_24985 PBMC +1939 CSVGTGGTNEKLFF TRBV29-1*01 TRBJ1-4*01 HLA-A*02:01 B2M MHCI GLCTLVAML BLMF1 EBV PMID:34811538 tetramer-sort yes amplicon-seq effector T cells T1D T1D_2 chip0420_776235 PBMC +1940 CALYNTDKLIF TRAV9-2*01 TRAJ34*01 CASSPVSGSTYEQYF TRBV3-1*01 TRBJ2-7*01 HLA-A*02:01 B2M MHCI GLCTLVAML BLMF1 EBV PMID:34811538 tetramer-sort yes amplicon-seq effector T cells T1D T1D_1 chip0420_821731 PBMC +1941 CASSTGQLSNTGELFF TRBV9*01 TRBJ2-2*01 HLA-A*02:01 B2M MHCI GLCTLVAML BLMF1 EBV PMID:34811538 tetramer-sort yes amplicon-seq effector T cells T1D T1D_1 chip0420_611238 PBMC +1942 CARPLAWNTGELFF TRBV28*01 TRBJ2-2*01 HLA-A*02:01 B2M MHCI FLGKIWPSYK GAG HIV-1 PMID:34811538 tetramer-sort yes amplicon-seq Naive T cells T1D T1D_1 chip0420_366488 PBMC +1943 CAEDNNARLMF TRAV5*01 TRAJ31*01 CSVDQRTGQKKNYGYTF TRBV29-1*01 TRBJ1-2*01 HLA-A*02:01 B2M MHCI GLCTLVAML BLMF1 EBV PMID:34811538 tetramer-sort yes amplicon-seq effector memory T cells T1D T1D_2 chip0420_136935 PBMC +1944 CASSPVSGSTHEQYF TRBV3-1*01 TRBJ2-7*01 HLA-A*02:01 B2M MHCI GLCTLVAML BLMF1 EBV PMID:34811538 tetramer-sort yes amplicon-seq effector memory T cells tet_neg chip0420_24256 PBMC +1945 CSVGSRGTNEKLFF TRBV29-1*01 TRBJ1-4*01 HLA-A*02:01 B2M MHCI GLCTLVAML BLMF1 EBV PMID:34811538 tetramer-sort yes amplicon-seq effector memory T cells T1D T1D_1 chip0420_734077 PBMC +1946 CASSSPGTGTYEQYF TRBV19*01 TRBJ2-7*01 HLA-A*02:01 B2M MHCI ALAGIGILTV MART1 HomoSapiens PMID:34811538 tetramer-sort yes amplicon-seq Naive T cells T1D T1D_1 chip0420_694491 PBMC +1947 YASSPRLWQETQYF TRBV27*01 TRBJ2-5*01 HLA-A*02:01 B2M MHCI HLCGSHLVEA PPI HomoSapiens PMID:34811538 tetramer-sort yes amplicon-seq effector memory T cells T1D T1D_1 chip0420_658987 PBMC +1949 CSVGTGGTNEKLFF TRBV29-1*01 TRBJ1-4*01 HLA-A*02:01 B2M MHCI GLCTLVAML BLMF1 EBV PMID:34811538 tetramer-sort yes amplicon-seq effector memory T cells T1D T1D_2 chip0420_179887 PBMC +1950 CASSQSRGSLWDTQYF TRBV4-3*01 TRBJ2-3*01 HLA-A*02:01 B2M MHCI YVLDHLIVV BRLF1 EBV PMID:34811538 tetramer-sort yes amplicon-seq effector memory T cells T1D T1D_2 chip0420_792400 PBMC +1952 CAVVSNSGYALNF TRAV21*01,TRAV12-2*01 TRAJ41*01 HLA-A*02:01 B2M MHCI GLCTLVAML BLMF1 EBV PMID:34811538 tetramer-sort yes amplicon-seq effector memory T cells T1D T1D_1 chip0420_587061 PBMC +1954 CAAYAGNMLTF TRAV29/DV5*01 TRAJ39*01 CASRAGAGDTQYF TRBV10-2*01 TRBJ2-3*01 HLA-A*02:01 B2M MHCI GLCTLVAML BLMF1 EBV PMID:34811538 tetramer-sort yes amplicon-seq effector memory T cells T1D T1D_2 chip0420_322066 PBMC +1955 CALKNTDKLIF TRAV16*01 TRAJ34*01 CASSLSVLSYNEQFF TRBV27*01 TRBJ2-1*01 HLA-A*02:01 B2M MHCI YVLDHLIVV BRLF1 EBV PMID:34811538 tetramer-sort yes amplicon-seq effector T cells T1D T1D_2 chip0420_170013 PBMC +1956 CASSSGLVAPGELFF TRBV2*01 TRBJ2-2*01 HLA-A*02:01 B2M MHCI GLCTLVAML BLMF1 EBV PMID:34811538 tetramer-sort yes amplicon-seq effector memory T cells T1D T1D_2 chip0420_146189 PBMC +1957 CASSINGGRRDGYTF TRBV19*01 TRBJ1-2*01 HLA-A*02:01 B2M MHCI GILGFVFTL M1 InfluenzaA PMID:34811538 tetramer-sort yes amplicon-seq transitional T cells between effector and memory populations T1D T1D_1 chip0420_142288 PBMC +1958 CAASDYYGGSQGNLIF TRAV23/DV6*01 TRAJ42*01 CASSEYGVGTLNEQFF TRBV25-1*01 TRBJ2-1*01 HLA-A*02:01 B2M MHCI LLAGIGTVPI PGT HomoSapiens PMID:34811538 tetramer-sort yes amplicon-seq Naive T cells T1D T1D_1 chip0420_2527 PBMC +1959 CGPAEPNDYKLSF TRAV30*01 TRAJ20*01 CVSRTGQLSNTGELLF TRBV9*01 TRBJ2-2*01 HLA-A*02:01 B2M MHCI GLCTLVAML BLMF1 EBV PMID:34811538 tetramer-sort yes amplicon-seq effector T cells T1D T1D_1 chip0420_684796 PBMC +1960 CVVTSSGtt?SAGQKLLF TRAV8-2*01 TRAJ16*01 HLA-A*02:01 B2M MHCI GLCTLVAML BLMF1 EBV PMID:34811538 tetramer-sort yes amplicon-seq effector memory T cells T1D T1D_1 chip0420_585694 PBMC +1961 CSVGTGGTNEKLFF TRBV29-1*01 TRBJ1-4*01 HLA-A*02:01 B2M MHCI GLCTLVAML BLMF1 EBV PMID:34811538 tetramer-sort yes amplicon-seq effector memory T cells T1D T1D_2 chip0420_570415 PBMC +1962 CAMEGASGYSTLTF TRAV17*01 TRAJ11*01 GASSRLGGKGGYTF TRBV6-1*01 TRBJ1-2*01 HLA-A*02:01 B2M MHCI FLYALALLL LMP2 EBV PMID:34811538 tetramer-sort yes amplicon-seq central memory T cells T1D T1D_2 chip0420_714989 PBMC +1963 CATEGDSGYSTLTF TRAV17*01 TRAJ11*01 CASSPQGGGYGYTF TRBV6-1*01 TRBJ1-2*01 HLA-A*02:01 B2M MHCI FLYALALLL LMP2 EBV PMID:34811538 tetramer-sort yes amplicon-seq central memory T cells T1D T1D_1 chip0420_511472 PBMC +1965 CAMREGVVEYGNKLVF TRAV14/DV4*01 TRAJ47*01 CASSFGAGELFF TRBV19*01 TRBJ2-2*01 HLA-A*02:01 B2M MHCI GILGFVFTL M1 InfluenzaA PMID:34811538 tetramer-sort yes amplicon-seq transitional T cells between effector and memory populations T1D T1D_1 chip0420_22535 PBMC +1966 CAETLYYNTDKLIF TRAV5*01 TRAJ34*01 CASRPQDSYEQYF TRBV25-1*01 TRBJ2-7*01 HLA-A*02:01 B2M MHCI GILGFVFTL M1 InfluenzaA PMID:34811538 tetramer-sort yes amplicon-seq Naive T cells T1D T1D_1 chip0420_352585 PBMC +1967 CASSPVSGSTYEQYF TRBV3-1*01 TRBJ2-7*01 HLA-A*02:01 B2M MHCI GLCTLVAML BLMF1 EBV PMID:34811538 tetramer-sort yes amplicon-seq effector T cells T1D T1D_1 chip0420_677222 PBMC +1968 CAGFLVg?cYNKLLF TRAV21*01 TRAJ4*01 CASSFLGTGLNEQYF TRBV28*01 TRBJ2-7*01 HLA-A*02:01 B2M MHCI GLCTLVAML BLMF1 EBV PMID:34811538 tetramer-sort yes amplicon-seq effector memory T cells T1D T1D_2 chip0420_653377 PBMC +1970 CALCGGGGNKLTF TRAV16*01 TRAJ10*01 CASRQGDGDTQYF TRBV10-2*01 TRBJ2-3*01 HLA-A*02:01 B2M MHCI GLCTLVAML BLMF1 EBV PMID:34811538 tetramer-sort yes amplicon-seq effector T cells T1D T1D_2 chip0420_378875 PBMC +1971 CASSLANTEAFF TRBV7-9*01 TRBJ1-1*01 HLA-A*02:01 B2M MHCI LLAGIGTVPI PGT HomoSapiens PMID:34811538 tetramer-sort yes amplicon-seq Naive T cells T1D T1D_1 chip0420_354193 PBMC +1972 CVVNGRDSSYKLIF TRAV12-1*01 TRAJ12*01 CASSSGLVAPGELFF TRBV2*01 TRBJ2-2*01 HLA-A*02:01 B2M MHCI GLCTLVAML BLMF1 EBV PMID:34811538 tetramer-sort yes amplicon-seq effector memory T cells T1D T1D_2 chip0420_601193 PBMC +1974 CVVNGRDSSYKLIF TRAV12-1*01 TRAJ12*01 CASSDGRVHPGTQYF TRBV2*01 TRBJ2-5*01 HLA-A*02:01 B2M MHCI GLCTLVAML BLMF1 EBV PMID:34811538 tetramer-sort yes amplicon-seq effector memory T cells T1D T1D_1 chip0420_839310 PBMC +1975 CASRAGAGDTQYF TRBV10-2*01 TRBJ2-3*01 HLA-A*02:01 B2M MHCI GLCTLVAML BLMF1 EBV PMID:34811538 tetramer-sort yes amplicon-seq effector memory T cells T1D T1D_2 chip0420_618008 PBMC +1976 CAVRDDRDDKIIF TRAV3*01 TRAJ30*01 HLA-A*02:01 B2M MHCI GLCTLVAML BLMF1 EBV PMID:34811538 tetramer-sort yes amplicon-seq effector memory T cells T1D T1D_2 chip0420_582074 PBMC +1977 CSVGTGGTNEKLFF TRBV29-1*01 TRBJ1-4*01 HLA-A*02:01 B2M MHCI GLCTLVAML BLMF1 EBV PMID:34811538 tetramer-sort yes amplicon-seq effector memory T cells T1D T1D_2 chip0420_1784 PBMC +1978 CAVRDDKDDKIIF TRAV3*01 TRAJ30*01 HLA-A*02:01 B2M MHCI GLCTLVAML BLMF1 EBV PMID:34811538 tetramer-sort yes amplicon-seq effector memory T cells T1D T1D_2 chip0420_330076 PBMC +1980 CSVGTGGTNEKLFF TRBV29-1*01 TRBJ1-4*01 HLA-A*02:01 B2M MHCI GLCTLVAML BLMF1 EBV PMID:34811538 tetramer-sort yes amplicon-seq central memory T cells T1D T1D_1 chip0420_562831 PBMC +1982 CASSPVSGSTYEQYF TRBV3-1*01 TRBJ2-7*01 HLA-A*02:01 B2M MHCI GLCTLVAML BLMF1 EBV PMID:34811538 tetramer-sort yes amplicon-seq effector memory T cells T1D T1D_1 chip0420_595661 PBMC +1983 CASSSGQVLPNEQFF TRBV2*01 TRBJ2-1*01 HLA-A*02:01 B2M MHCI GLCTLVAML BLMF1 EBV PMID:34811538 tetramer-sort yes amplicon-seq effector memory T cells T1D T1D_1 chip0420_338073 PBMC +1984 CAESTSGGKLIF TRAV5*01 TRAJ23*01 CSVGTGGTNEKLFF TRBV29-1*01 TRBJ1-4*01 HLA-A*02:01 B2M MHCI GLCTLVAML BLMF1 EBV PMID:34811538 tetramer-sort yes amplicon-seq effector T cells T1D T1D_2 chip0420_160626 PBMC +1987 CASLTRg?gASKLIF TRAV8-6*01 TRAJ3*01 HLA-A*02:01 B2M MHCI GLCTLVAML BLMF1 EBV PMID:34811538 tetramer-sort yes amplicon-seq effector T cells T1D T1D_2 chip0420_547018 PBMC +1988 CASRAGAGATQYF TRBV10-2*01 TRBJ2-3*01 HLA-A*02:01 B2M MHCI GLCTLVAML BLMF1 EBV PMID:34811538 tetramer-sort yes amplicon-seq effector memory T cells T1D T1D_2 chip0420_78653 PBMC +1989 CASRAGAGDTQYF TRBV10-2*01 TRBJ2-3*01 HLA-A*02:01 B2M MHCI GLCTLVAML BLMF1 EBV PMID:34811538 tetramer-sort yes amplicon-seq effector T cells T1D T1D_2 chip0420_118677 PBMC +1990 CASSLGLNQPQHF TRBV28*01 TRBJ1-5*01 HLA-A*02:01 B2M MHCI LLAGIGTVPI PGT HomoSapiens PMID:34811538 tetramer-sort yes amplicon-seq Naive T cells T1D T1D_1 chip0420_98648 PBMC +1991 CSVGTGGTNEKLFF TRBV29-1*01 TRBJ1-4*01 HLA-A*02:01 B2M MHCI GLCTLVAML BLMF1 EBV PMID:34811538 tetramer-sort yes amplicon-seq effector memory T cells T1D T1D_2 chip0420_88564 PBMC +1993 CAESTSGGKLIF TRAV5*01 TRAJ23*01 HLA-A*02:01 B2M MHCI GLCTLVAML BLMF1 EBV PMID:34811538 tetramer-sort yes amplicon-seq effector T cells T1D T1D_2 chip0420_756027 PBMC +1994 CGPAEPNDYKLSF TRAV30*01 TRAJ20*01 CASSTGQLSNTGELFF TRBV9*01 TRBJ2-2*01 HLA-A*02:01 B2M MHCI GLCTLVAML BLMF1 EBV PMID:34811538 tetramer-sort yes amplicon-seq effector T cells T1D T1D_1 chip0420_326685 PBMC +1995 CASSLGTGGQPQHF TRBV7-6*01 TRBJ1-5*01 HLA-A*02:01 B2M MHCI GIIYIIYKL P3A CoxsackievirusB PMID:34811538 tetramer-sort yes amplicon-seq Naive T cells T1D T1D_1 chip0420_689101 PBMC +1996 CASSSGLVAPGELFF TRBV2*01 TRBJ2-2*01 HLA-A*02:01 B2M MHCI GLCTLVAML BLMF1 EBV PMID:34811538 tetramer-sort yes amplicon-seq effector T cells T1D T1D_2 chip0420_672717 PBMC +1997 YFLFMLVgt?PSYGELTF TRAV26-2*01 TRAJ52*01 CASSSGGNVDTQYF TRBV7-3*01 TRBJ2-3*01 HLA-A*02:01 B2M MHCI GLCTLVAML BLMF1 EBV PMID:34811538 tetramer-sort yes amplicon-seq effector memory T cells T1D T1D_1 chip0420_868059 PBMC +1998 CASSSGGNVDTQYF TRBV7-3*01 TRBJ2-3*01 HLA-A*02:01 B2M MHCI GLCTLVAML BLMF1 EBV PMID:34811538 tetramer-sort yes amplicon-seq effector memory T cells T1D T1D_1 chip0420_272843 PBMC +2001 CALKAcg??acSKLSF TRAV9-2*01 TRAJ20*01 HLA-A*02:01 B2M MHCI LLIDLTSFL ZNT8 HomoSapiens PMID:34811538 tetramer-sort yes amplicon-seq Naive T cells T1D T1D_1 chip0420_586960 PBMC +2002 CASSHLLGTGFGYTF TRBV3-1*01 TRBJ1-2*01 HLA-A*02:01 B2M MHCI YVLDHLIVV BRLF1 EBV PMID:34811538 tetramer-sort yes amplicon-seq effector memory T cells T1D T1D_1 chip0420_859051 PBMC +2003 CAYKRTNDMRF TRAV38-1*01 TRAJ43*01 HLA-A*02:01 B2M MHCI VVTGVLVYL ZNT8 HomoSapiens PMID:34811538 tetramer-sort yes amplicon-seq Naive T cells T1D T1D_2 chip0420_845148 PBMC +2004 CASSSGLVAPGELFF TRBV2*01 TRBJ2-2*01 HLA-A*02:01 B2M MHCI GLCTLVAML BLMF1 EBV PMID:34811538 tetramer-sort yes amplicon-seq effector T cells T1D T1D_2 chip0420_157527 PBMC +2006 CAMDGASGYSTLTF TRAV17*01 TRAJ11*01 HLA-A*02:01 B2M MHCI FLYALALLL LMP2 EBV PMID:34811538 tetramer-sort yes amplicon-seq central memory T cells T1D T1D_2 chip0420_683 PBMC +2007 CAVKDTDKLIF TRAV8-1*01 TRAJ34*01 HLA-A*02:01 B2M MHCI YVLDHLIVV BRLF1 EBV PMID:34811538 tetramer-sort yes amplicon-seq effector memory T cells T1D T1D_2 chip0420_817250 PBMC +2008 CSVGTGGTNEKLFF TRBV29-1*01 TRBJ1-4*01 HLA-A*02:01 B2M MHCI GLCTLVAML BLMF1 EBV PMID:34811538 tetramer-sort yes amplicon-seq effector memory T cells T1D T1D_2 chip0420_606429 PBMC +2009 CASSLGAGGWETQYF TRBV12-3*01,TRBV12-4*01 TRBJ2-5*01 HLA-A*02:01 B2M MHCI RGPGRAFVTI GP160 HIV-1 PMID:34811538 tetramer-sort yes amplicon-seq Naive T cells T1D T1D_1 chip0420_603664 PBMC +2010 CASSQSRGSLWDTQYF TRBV4-3*01 TRBJ2-3*01 HLA-A*02:01 B2M MHCI YVLDHLIVV BRLF1 EBV PMID:34811538 tetramer-sort yes amplicon-seq effector T cells T1D T1D_2 chip0420_428972 PBMC +2011 CASSSGGNVDTQYF TRBV7-3*01 TRBJ2-3*01 HLA-A*02:01 B2M MHCI GLCTLVAML BLMF1 EBV PMID:34811538 tetramer-sort yes amplicon-seq effector T cells T1D T1D_1 chip0420_787202 PBMC +2012 CASNLAGNNEQFF TRBV9*01 TRBJ2-1*01 HLA-A*02:01 B2M MHCI GLCTLVAML BLMF1 EBV PMID:34811538 tetramer-sort yes amplicon-seq effector memory T cells T1D T1D_2 chip0420_744123 PBMC +2013 CGTQENDSWGKLQF TRAV30*01 TRAJ24*01 CASSVRAGETQYF TRBV19*01 TRBJ2-5*01 HLA-A*02:01 B2M MHCI GILGFVFTL M1 InfluenzaA PMID:34811538 tetramer-sort yes amplicon-seq transitional T cells between effector and memory populations T1D T1D_1 chip0420_270338 PBMC +2014 CASSSGGNVDTQYF TRBV7-3*01 TRBJ2-3*01 HLA-A*02:01 B2M MHCI GLCTLVAML BLMF1 EBV PMID:34811538 tetramer-sort yes amplicon-seq effector memory T cells T1D T1D_1 chip0420_650155 PBMC +2016 CAMGISNFGNEKLTF TRAV12-3*01 TRAJ48*01 CASSQDQAGYGQETQYF TRBV3-1*01 TRBJ2-5*01 HLA-A*02:01 B2M MHCI LLAGIGTVPI PGT HomoSapiens PMID:34811538 tetramer-sort yes amplicon-seq Naive T cells T1D T1D_2 chip0420_226931 PBMC +2018 CASSLFSSEQFF TRBV28*01 TRBJ2-1*01 HLA-A*02:01 B2M MHCI YVLDHLIVV BRLF1 EBV PMID:34811538 tetramer-sort yes amplicon-seq effector memory T cells T1D T1D_1 chip0420_33115 PBMC +2019 CASSEDGMNTEAFF TRBV10-2*01 TRBJ1-1*01 HLA-A*02:01 B2M MHCI CLGGLLTMV LMP2A EBV PMID:34811538 tetramer-sort yes amplicon-seq effector memory T cells T1D T1D_2 chip0420_869498 PBMC +2020 CASSFPHDTEAFF TRBV11-3*01 TRBJ1-1*01 HLA-A*02:01 B2M MHCI LLAGIGTVPI PGT HomoSapiens PMID:34811538 tetramer-sort yes amplicon-seq Naive T cells T1D T1D_1 chip0420_467643 PBMC +2022 CSVGSRGTNEKLFF TRBV29-1*01 TRBJ1-4*01 HLA-A*02:01 B2M MHCI GLCTLVAML BLMF1 EBV PMID:34811538 tetramer-sort yes amplicon-seq effector memory T cells T1D T1D_1 chip0420_498599 PBMC +2023 CASSPVSGSTYEQYF TRBV3-1*01 TRBJ2-7*01 HLA-A*02:01 B2M MHCI GLCTLVAML BLMF1 EBV PMID:34811538 tetramer-sort yes amplicon-seq effector memory T cells T1D T1D_1 chip0420_206584 PBMC +2024 CGTQENDSWGKLQF TRAV30*01 TRAJ24*01 CASSVRAGETQYF TRBV19*01 TRBJ2-5*01 HLA-A*02:01 B2M MHCI GILGFVFTL M1 InfluenzaA PMID:34811538 tetramer-sort yes amplicon-seq transitional T cells between effector and memory populations T1D T1D_1 chip0420_131976 PBMC +2025 CASSAGLAGNEQFF TRBV28*01 TRBJ2-1*01 HLA-A*02:01 B2M MHCI LLAGIGTVPI PGT HomoSapiens PMID:34811538 tetramer-sort yes amplicon-seq Naive T cells T1D T1D_1 chip0420_615462 PBMC +2026 CASSFSQPTDTQYF TRBV27*01 TRBJ2-3*01 HLA-A*02:01 B2M MHCI CLGGLLTMV LMP2A EBV PMID:34811538 tetramer-sort yes amplicon-seq natural killer-like T cells T1D T1D_1 chip0420_271904 PBMC +2027 CSVGTGGTNEKLFF TRBV29-1*01 TRBJ1-4*01 HLA-A*02:01 B2M MHCI GLCTLVAML BLMF1 EBV PMID:34811538 tetramer-sort yes amplicon-seq effector memory T cells T1D T1D_2 chip0420_181458 PBMC +2028 CAESTSGGKLIF TRAV5*01 TRAJ23*01 CSVGTGGTNEKLFF TRBV29-1*01 TRBJ1-4*01 HLA-A*02:01 B2M MHCI GLCTLVAML BLMF1 EBV PMID:34811538 tetramer-sort yes amplicon-seq effector T cells T1D T1D_2 chip0420_59694 PBMC +2030 CASRAGAGDTQYF TRBV10-2*01 TRBJ2-3*01 HLA-A*02:01 B2M MHCI GLCTLVAML BLMF1 EBV PMID:34811538 tetramer-sort yes amplicon-seq effector memory T cells T1D T1D_2 chip0420_314287 PBMC +2032 CAMSLSNFGNEKLTF TRAV12-3*01 TRAJ48*01 HLA-A*02:01 B2M MHCI LLAGIGTVPI PGT HomoSapiens PMID:34811538 tetramer-sort yes amplicon-seq Naive T cells T1D T1D_1 chip0420_808353 PBMC +2033 CASSSRLAPTDTQYF TRBV28*01 TRBJ2-3*01 HLA-A*02:01 B2M MHCI ALWMRLLPL PREINS HomoSapiens PMID:34811538 tetramer-sort yes amplicon-seq Naive T cells T1D T1D_1 chip0420_821247 PBMC +2035 CVVNPPHDSELGF TRAV12-1*01 TRAJ20*01 HLA-A*02:01 B2M MHCI GLCTLVAML BLMF1 EBV PMID:34811538 tetramer-sort yes amplicon-seq effector memory T cells T1D T1D_2 chip0420_246675 PBMC +2037 CARSSLSLATQSF TRBV19*01 TRBJ2-3*01 HLA-A*02:01 B2M MHCI GILGFVFTL M1 InfluenzaA PMID:34811538 tetramer-sort yes amplicon-seq transitional T cells between effector and memory populations T1D T1D_1 chip0420_526077 PBMC +2038 CAASMLVgt?TSYGKLAF TRAV29/DV5*01 TRAJ52*01 HLA-A*02:01 B2M MHCI GLCTLVAML BLMF1 EBV PMID:34811538 tetramer-sort yes amplicon-seq effector memory T cells T1D T1D_1 chip0420_748709 PBMC +2039 CASSSDGLNTEAFF TRBV10-2*01 TRBJ1-1*01 HLA-A*02:01 B2M MHCI CLGGLLTMV LMP2A EBV PMID:34811538 tetramer-sort yes amplicon-seq effector memory T cells T1D T1D_2 chip0420_509328 PBMC +2040 CASSEAGMNTEAFF TRBV10-2*01 TRBJ1-1*01 HLA-A*02:01 B2M MHCI CLGGLLTMV LMP2A EBV PMID:34811538 tetramer-sort yes amplicon-seq effector memory T cells T1D T1D_2 chip0420_474720 PBMC +2041 CASLTPGASKIIF TRAV8-6*01 TRAJ3*01 CASSSGLVAPGELFF TRBV2*01 TRBJ2-2*01 HLA-A*02:01 B2M MHCI GLCTLVAML BLMF1 EBV PMID:34811538 tetramer-sort yes amplicon-seq effector T cells T1D T1D_2 chip0420_543463 PBMC +2042 CASSEWTGYQPQHF TRBV6-1*01 TRBJ1-5*01 HLA-A*02:01 B2M MHCI GLCTLVAML BLMF1 EBV PMID:34811538 tetramer-sort yes amplicon-seq effector T cells T1D T1D_2 chip0420_640983 PBMC +2045 CSDRDGGNYGYTF TRBV29-1*01 TRBJ1-2*01 HLA-A*02:01 B2M MHCI YVLDHLIVV BRLF1 EBV PMID:34811538 tetramer-sort yes amplicon-seq effector memory T cells T1D T1D_2 chip0420_667690 PBMC +2046 CASRMGAGDTQYF TRBV10-2*01 TRBJ2-3*01 HLA-A*02:01 B2M MHCI GLCTLVAML BLMF1 EBV PMID:34811538 tetramer-sort yes amplicon-seq effector memory T cells T1D T1D_2 chip0420_488654 PBMC +2047 CASSSGGNVDTQYF TRBV7-3*01 TRBJ2-3*01 HLA-A*02:01 B2M MHCI GLCTLVAML BLMF1 EBV PMID:34811538 tetramer-sort yes amplicon-seq effector memory T cells T1D T1D_1 chip0420_460318 PBMC +2049 CGLEEPNDSKLSF TRAV30*01 TRAJ20*01 CASSTGQLSNTGELFF TRBV9*01 TRBJ2-2*01 HLA-A*02:01 B2M MHCI GLCTLVAML BLMF1 EBV PMID:34811538 tetramer-sort yes amplicon-seq effector memory T cells T1D T1D_1 chip0420_316235 PBMC +2050 CAQRYRFR??aGGADGLTF TRAV25*01 TRAJ45*01 CASSIRSSYEQYF TRBV19*01 TRBJ2-7*01 HLA-A*02:01 B2M MHCI GILGFVFTL M1 InfluenzaA PMID:34811538 tetramer-sort yes amplicon-seq transitional T cells between effector and memory populations T1D T1D_1 chip0420_87294 PBMC +2051 CSVGSRGTNEKLFF TRBV29-1*01 TRBJ1-4*01 HLA-A*02:01 B2M MHCI GLCTLVAML BLMF1 EBV PMID:34811538 tetramer-sort yes amplicon-seq effector memory T cells T1D T1D_1 chip0420_692380 PBMC +2052 CATAGARNYQLIW TRAV17*01 TRAJ33*01 CASSQGRGYTF TRBV7-8*01 TRBJ1-2*01 HLA-A*02:01 B2M MHCI RLLPLLALLAL INS HomoSapiens PMID:34811538 tetramer-sort yes amplicon-seq Naive T cells T1D T1D_1 chip0420_676822 PBMC +2054 CASSPGGLAPYEQYF TRBV27*01 TRBJ2-7*01 HLA-A*02:01 B2M MHCI ALAGIGILTV MART1 HomoSapiens PMID:34811538 tetramer-sort yes amplicon-seq Naive T cells T1D T1D_1 chip0420_651713 PBMC +2055 CASNIAGDNEQFF TRBV19*01 TRBJ2-1*01 HLA-A*02:01 B2M MHCI GILGFVFTL M1 InfluenzaA PMID:34811538 tetramer-sort yes amplicon-seq transitional T cells between effector and memory populations T1D T1D_1 chip0420_881033 PBMC +2056 CAVGAAMRF TRAV12-2*01 TRAJ43*01 HLA-A*02:01 B2M MHCI HLVEALYLV PREINS HomoSapiens PMID:34811538 tetramer-sort yes amplicon-seq Naive T cells T1D T1D_1 chip0420_373371 PBMC +2057 CAPEGASGYSTLTF TRAV17*01 TRAJ11*01 HLA-A*02:01 B2M MHCI FLYALALLL LMP2 EBV PMID:34811538 tetramer-sort yes amplicon-seq central memory T cells T1D T1D_1 chip0420_322223 PBMC +2058 SAVNSKNSQLIW TRAV12-2*01 TRAJ33*01 CSDRDGGNYGYTF TRBV29-1*01 TRBJ1-2*01 HLA-A*02:01 B2M MHCI YVLDHLIVV BRLF1 EBV PMID:34811538 tetramer-sort yes amplicon-seq effector memory T cells T1D T1D_2 chip0420_199171 PBMC +2059 CASSLHLRQDEQPQHF TRBV28*01 TRBJ1-5*01 HLA-B*08:01 B2M MHCI QAKWRLQTL EBNA3A EBV PMID:34811538 tetramer-sort yes amplicon-seq effector memory T cells T1D T1D_3 chip0420_58733 PBMC +2060 CVANGRDRRFPLLF TRAV12-1*01 TRAJ12*01 CASSSGLVAPGELFF TRBV2*01 TRBJ2-2*01 HLA-A*02:01 B2M MHCI GLCTLVAML BLMF1 EBV PMID:34811538 tetramer-sort yes amplicon-seq effector memory T cells T1D T1D_2 chip0420_15684 PBMC +2061 WAVSAtt?AADLRF TRAV8-4*01 TRAJ43*01 CSVGSRGTNEKLFF TRBV29-1*01 TRBJ1-4*01 HLA-A*02:01 B2M MHCI GLCTLVAML BLMF1 EBV PMID:34811538 tetramer-sort yes amplicon-seq effector memory T cells T1D T1D_1 chip0420_117710 PBMC +2063 CASSQSPGGTQYF TRBV14*01 TRBJ2-3*01 HLA-A*02:01 B2M MHCI GLCTLVAML BLMF1 EBV PMID:34811538 tetramer-sort yes amplicon-seq effector memory T cells T1D T1D_1 chip0420_636150 PBMC +2064 CASRAGAGDTQYF TRBV10-2*01 TRBJ2-3*01 HLA-A*02:01 B2M MHCI GLCTLVAML BLMF1 EBV PMID:34811538 tetramer-sort yes amplicon-seq effector memory T cells T1D T1D_2 chip0420_457039 PBMC +2065 CASSPDQTSSYNEQFF TRBV27*01 TRBJ2-1*01 HLA-A*02:01 B2M MHCI YVLDHLIVV BRLF1 EBV PMID:34811538 tetramer-sort yes amplicon-seq effector memory T cells T1D T1D_1 chip0420_271467 PBMC +2066 CASSTGQLSNTGELFF TRBV9*01 TRBJ2-2*01 HLA-A*02:01 B2M MHCI GLCTLVAML BLMF1 EBV PMID:34811538 tetramer-sort yes amplicon-seq effector memory T cells T1D T1D_1 chip0420_182425 PBMC +2068 CADDYKLSF TRAV13-1*01 TRAJ20*01 CASSPRQGSEQFF TRBV12-3*01,TRBV12-4*01 TRBJ2-1*01 HLA-A*02:01 B2M MHCI MLYQHLLPL INSDRIP HomoSapiens PMID:34811538 tetramer-sort yes amplicon-seq Naive T cells T1D T1D_2 chip0420_241622 PBMC +2070 CASSSGGNVDTQYF TRBV7-3*01 TRBJ2-3*01 HLA-A*02:01 B2M MHCI GLCTLVAML BLMF1 EBV PMID:34811538 tetramer-sort yes amplicon-seq effector memory T cells T1D T1D_1 chip0420_365049 PBMC +2071 CSVGTGGTNEKLFF TRBV29-1*01 TRBJ1-4*01 HLA-A*02:01 B2M MHCI GLCTLVAML BLMF1 EBV PMID:34811538 tetramer-sort yes amplicon-seq effector memory T cells T1D T1D_2 chip0420_79795 PBMC +2072 CVVNGRDSSYKLIF TRAV12-1*01 TRAJ12*01 CASSSGLVAPGELFF TRBV2*01 TRBJ2-2*01 HLA-A*02:01 B2M MHCI GLCTLVAML BLMF1 EBV PMID:34811538 tetramer-sort yes amplicon-seq effector T cells T1D T1D_2 chip0420_817049 PBMC +2073 CSVGTGGTNEKLFF TRBV29-1*01 TRBJ1-4*01 HLA-A*02:01 B2M MHCI GLCTLVAML BLMF1 EBV PMID:34811538 tetramer-sort yes amplicon-seq effector memory T cells T1D T1D_2 chip0420_268352 PBMC +2074 CSVGTGGTNEKLFF TRBV29-1*01 TRBJ1-4*01 HLA-A*02:01 B2M MHCI GLCTLVAML BLMF1 EBV PMID:34811538 tetramer-sort yes amplicon-seq effector memory T cells T1D T1D_2 chip0420_691986 PBMC +2076 CSVETGGTNEKLFF TRBV29-1*01 TRBJ1-4*01 HLA-A*02:01 B2M MHCI GLCTLVAML BLMF1 EBV PMID:34811538 tetramer-sort yes amplicon-seq effector T cells T1D T1D_2 chip0420_108823 PBMC +2077 CSVGSRGTNEKLFF TRBV29-1*01 TRBJ1-4*01 HLA-A*02:01 B2M MHCI GLCTLVAML BLMF1 EBV PMID:34811538 tetramer-sort yes amplicon-seq effector T cells T1D T1D_1 chip0420_814477 PBMC +2078 CASSPSSSGGEQYF TRBV2*01 TRBJ2-7*01 HLA-A*02:01 B2M MHCI ALAGIGILTV MART1 HomoSapiens PMID:34811538 tetramer-sort yes amplicon-seq Naive T cells T1D T1D_1 chip0420_536984 PBMC +2079 CAAKGYDKIIF TRAV8-1*01 TRAJ30*01 CASSPDQTSSYNEQFF TRBV27*01 TRBJ2-1*01 HLA-A*02:01 B2M MHCI YVLDHLIVV BRLF1 EBV PMID:34811538 tetramer-sort yes amplicon-seq effector memory T cells T1D T1D_1 chip0420_450577 PBMC +2080 CAVG??gREGF TRAV2*01 TRAJ34*01 CASRMGAGDTQYF TRBV10-2*01 TRBJ2-3*01 HLA-A*02:01 B2M MHCI GLCTLVAML BLMF1 EBV PMID:34811538 tetramer-sort yes amplicon-seq effector memory T cells T1D T1D_2 chip0420_785953 PBMC +2081 CASRMGAGDTQYF TRBV10-2*01 TRBJ2-3*01 HLA-A*02:01 B2M MHCI GLCTLVAML BLMF1 EBV PMID:34811538 tetramer-sort yes amplicon-seq effector memory T cells T1D T1D_2 chip0420_629758 PBMC +2082 CAVKVDGQKLLF TRAV8-1*01 TRAJ16*01 HLA-A*02:01 B2M MHCI YVLDHLIVV BRLF1 EBV PMID:34811538 tetramer-sort yes amplicon-seq effector memory T cells T1D T1D_2 chip0420_471839 PBMC +2083 CAMTRSNFGNEKLTL TRAV12-3*01 TRAJ48*01 HLA-A*02:01 B2M MHCI LLAGIGTVPI PGT HomoSapiens PMID:34811538 tetramer-sort yes amplicon-seq Naive T cells T1D T1D_1 chip0420_389912 PBMC +2086 CLVGLGGRRVINKLIF TRAV4*01 TRAJ32*01 HLA-A*02:01 B2M MHCI CINGVCWTV NS3 HCV PMID:34811538 tetramer-sort yes amplicon-seq Naive T cells T1D T1D_1 chip0420_826567 PBMC +2087 CASRMGAGDTQYF TRBV10-2*01 TRBJ2-3*01 HLA-A*02:01 B2M MHCI GLCTLVAML BLMF1 EBV PMID:34811538 tetramer-sort yes amplicon-seq effector memory T cells T1D T1D_2 chip0420_802001 PBMC +2088 CATEGASGYSTLTF TRAV17*01 TRAJ11*01 CASSVRGGNYGYTF TRBV6-1*01 TRBJ1-2*01 HLA-A*02:01 B2M MHCI FLYALALLL LMP2 EBV PMID:34811538 tetramer-sort yes amplicon-seq central memory T cells T1D T1D_1 chip0420_779308 PBMC +2089 CANSYMSGEAFF TRBV6-2*01,TRBV6-3*01 TRBJ1-1*01 HLA-A*02:01 B2M MHCI YVLDHLIVV BRLF1 EBV PMID:34811538 tetramer-sort yes amplicon-seq effector memory T cells T1D T1D_2 chip0420_299527 PBMC +2090 CASSGLSVNEQFL TRBV13*01 TRBJ2-1*01 HLA-A*02:01 B2M MHCI LLAGIGTVPI PGT HomoSapiens PMID:34811538 tetramer-sort yes amplicon-seq Naive T cells T1D T1D_1 chip0420_274562 PBMC +2091 CASSPDHTRSYTEQFF TRBV27*01 TRBJ2-1*01 HLA-A*02:01 B2M MHCI YVLDHLIVV BRLF1 EBV PMID:34811538 tetramer-sort yes amplicon-seq effector memory T cells T1D T1D_1 chip0420_734092 PBMC +2092 CSVGTGGTNEKLFF TRBV29-1*01 TRBJ1-4*01 HLA-A*02:01 B2M MHCI GLCTLVAML BLMF1 EBV PMID:34811538 tetramer-sort yes amplicon-seq effector T cells T1D T1D_2 chip0420_627685 PBMC +2093 CSVGTGGTNEKLFF TRBV29-1*01 TRBJ1-4*01 HLA-A*02:01 B2M MHCI GLCTLVAML BLMF1 EBV PMID:34811538 tetramer-sort yes amplicon-seq transitional T cells between effector and memory populations T1D T1D_2 chip0420_825069 PBMC +2094 CAESTSGGKLIF TRAV5*01 TRAJ23*01 CSVGTGGTNEKLFF TRBV29-1*01 TRBJ1-4*01 HLA-A*02:01 B2M MHCI GLCTLVAML BLMF1 EBV PMID:34811538 tetramer-sort yes amplicon-seq effector T cells T1D T1D_2 chip0420_267817 PBMC +2095 CSVGSRGTNEKLFF TRBV29-1*01 TRBJ1-4*01 HLA-A*02:01 B2M MHCI GLCTLVAML BLMF1 EBV PMID:34811538 tetramer-sort yes amplicon-seq effector memory T cells T1D T1D_1 chip0420_447988 PBMC +2096 CASSPVGNTEAFF TRAV14/DV4*01 TRAJ40*01 CASSPVGNTEAFF TRBV2*01 TRBJ1-1*01 HLA-A*02:01 B2M MHCI LLAGIGTVPI PGT HomoSapiens PMID:34811538 tetramer-sort yes amplicon-seq Naive T cells T1D T1D_1 chip0420_183757 PBMC +2097 CAESTSGGKLIF TRAV5*01 TRAJ23*01 CSVGSRGTNEKLFF TRBV29-1*01 TRBJ1-4*01 HLA-A*02:01 B2M MHCI GLCTLVAML BLMF1 EBV PMID:34811538 tetramer-sort yes amplicon-seq effector memory T cells T1D T1D_1 chip0420_43084 PBMC +2098 CASRAGAGDTQYF TRBV10-2*01 TRBJ2-3*01 HLA-A*02:01 B2M MHCI GLCTLVAML BLMF1 EBV PMID:34811538 tetramer-sort yes amplicon-seq effector memory T cells T1D T1D_2 chip0420_825303 PBMC +2099 CSVDQRTGQKKNYGYTF TRBV29-1*01 TRBJ1-2*01 HLA-A*02:01 B2M MHCI GLCTLVAML BLMF1 EBV PMID:34811538 tetramer-sort yes amplicon-seq effector memory T cells T1D T1D_2 chip0420_602036 PBMC +2100 CASSGDDRVSRGYTF TRBV2*01 TRBJ1-2*01 HLA-A*02:01 B2M MHCI ALWGPDPAAA PREINS HomoSapiens PMID:34811538 tetramer-sort yes amplicon-seq Naive T cells T1D T1D_1 chip0420_326667 PBMC +2101 CASSLTSEDGELFF TRBV11-3*01 TRBJ2-2*01 HLA-A*02:01 B2M MHCI GLCTLVAML BLMF1 EBV PMID:34811538 tetramer-sort yes amplicon-seq effector memory T cells T1D T1D_2 chip0420_674050 PBMC +2102 CASSLQGGSFYGYTF TRBV6-1*01 TRBJ1-2*01 HLA-A*02:01 B2M MHCI FLYALALLL LMP2 EBV PMID:34811538 tetramer-sort yes amplicon-seq central memory T cells T1D T1D_2 chip0420_740345 PBMC +2104 CAISEGTLSSYNEQFF TRBV10-3*01 TRBJ2-1*01 HLA-A*02:01 B2M MHCI YVLDHLIVV BRLF1 EBV PMID:34811538 tetramer-sort yes amplicon-seq effector T cells T1D T1D_1 chip0420_245362 PBMC +2106 CASSVLGEQQFF TRBV27*01 TRBJ2-1*01 HLA-A*02:01 B2M MHCI LALWGPDPAA INS HomoSapiens PMID:34811538 tetramer-sort yes amplicon-seq Naive T cells T1D T1D_2 chip0420_613205 PBMC +2107 CAVKDTDKLIF TRAV8-1*01 TRAJ34*01 CSVGTEGTNEKLFF TRBV29-1*01 TRBJ1-4*01 HLA-A*02:01 B2M MHCI YVLDHLIVV BRLF1 EBV PMID:34811538 tetramer-sort yes amplicon-seq effector memory T cells T1D T1D_2 chip0420_373754 PBMC +2110 CASNLHLDSTNTGELFF TRBV11-1*01 TRBJ2-2*01 HLA-A*02:01 B2M MHCI LLAGIGTVPI PGT HomoSapiens PMID:34811538 tetramer-sort yes amplicon-seq Naive T cells T1D T1D_1 chip0420_457988 PBMC +2112 CAVKGYDKIIF TRAV8-1*01 TRAJ30*01 HLA-A*02:01 B2M MHCI YVLDHLIVV BRLF1 EBV PMID:34811538 tetramer-sort yes amplicon-seq effector T cells T1D T1D_1 chip0420_774917 PBMC +2113 CASSPSGAYYGYTF TRBV5-1*01 TRBJ1-2*01 HLA-A*02:01 B2M MHCI CLGGLLTMV LMP2A EBV PMID:34811538 tetramer-sort yes amplicon-seq effector memory T cells T1D T1D_2 chip0420_649421 PBMC +2114 CSANDHTYNEQFL TRBV20-1*01 TRBJ2-1*01 HLA-A*02:01 B2M MHCI YVLDHLIVV BRLF1 EBV PMID:34811538 tetramer-sort yes amplicon-seq effector T cells T1D T1D_1 chip0420_471499 PBMC +2115 CSVGTGGTNEKLFF TRBV29-1*01 TRBJ1-4*01 HLA-A*02:01 B2M MHCI GLCTLVAML BLMF1 EBV PMID:34811538 tetramer-sort yes amplicon-seq effector memory T cells T1D T1D_2 chip0420_230610 PBMC +2116 CASSVGVLSAGELFF TRBV9*01 TRBJ2-2*01 HLA-A*02:01 B2M MHCI GLCTLVAML BLMF1 EBV PMID:34811538 tetramer-sort yes amplicon-seq effector memory T cells T1D T1D_2 chip0420_141945 PBMC +2117 CAVNLYSTLTF TRAV8-1*01 TRAJ11*01 CASSYMSGEAFF TRBV6-2*01,TRBV6-3*01 TRBJ1-1*01 HLA-A*02:01 B2M MHCI YVLDHLIVV BRLF1 EBV PMID:34811538 tetramer-sort yes amplicon-seq effector T cells T1D T1D_2 chip0420_44129 PBMC +2118 CAVVSNSGYALNF TRAV12-2*01,TRAV21*01 TRAJ41*01 CASRSGGHVDTQYF TRBV7-3*01 TRBJ2-3*01 HLA-A*02:01 B2M MHCI GLCTLVAML BLMF1 EBV PMID:34811538 tetramer-sort yes amplicon-seq effector memory T cells T1D T1D_1 chip0420_106833 PBMC +2120 CSVGTGGTNEKLFF TRBV29-1*01 TRBJ1-4*01 HLA-A*02:01 B2M MHCI GLCTLVAML BLMF1 EBV PMID:34811538 tetramer-sort yes amplicon-seq effector memory T cells T1D T1D_1 chip0420_475662 PBMC +2122 CSVGSRGTNEKLFF TRBV29-1*01 TRBJ1-4*01 HLA-A*02:01 B2M MHCI GLCTLVAML BLMF1 EBV PMID:34811538 tetramer-sort yes amplicon-seq effector memory T cells T1D T1D_1 chip0420_715748 PBMC +2123 CASRAGAGDTQFF TRBV10-2*01 TRBJ2-3*01 HLA-A*02:01 B2M MHCI GLCTLVAML BLMF1 EBV PMID:34811538 tetramer-sort yes amplicon-seq effector memory T cells T1D T1D_2 chip0420_663715 PBMC +2125 CSVGSRGTNEKLFF TRBV29-1*01 TRBJ1-4*01 HLA-A*02:01 B2M MHCI GLCTLVAML BLMF1 EBV PMID:34811538 tetramer-sort yes amplicon-seq effector memory T cells T1D T1D_1 chip0420_52979 PBMC +2127 CASSQGQGPFTEAFF TRBV5-1*01 TRBJ1-1*01 HLA-A*02:01 B2M MHCI LVGPTPVNI POL HIV-1 PMID:34811538 tetramer-sort yes amplicon-seq Naive T cells T1D T1D_1 chip0420_861191 PBMC +2130 CAVKDTDKLIF TRAV8-1*01 TRAJ34*01 HLA-A*02:01 B2M MHCI YVLDHLIVV BRLF1 EBV PMID:34811538 tetramer-sort yes amplicon-seq effector memory T cells T1D T1D_2 chip0420_347612 PBMC +2132 CALYNTDKLIF TRAV9-2*01 TRAJ34*01 CASSPVSGSTYEQYF TRBV3-1*01 TRBJ2-7*01 HLA-A*02:01 B2M MHCI GLCTLVAML BLMF1 EBV PMID:34811538 tetramer-sort yes amplicon-seq effector T cells T1D T1D_1 chip0420_810907 PBMC +2133 CAVLMDSNHQLIW TRAV12-3*01 TRAJ33*01 CSVGTGGTNEKLFF TRBV29-1*01 TRBJ1-4*01 HLA-A*02:01 B2M MHCI GLCTLVAML BLMF1 EBV PMID:34811538 tetramer-sort yes amplicon-seq effector memory T cells T1D T1D_2 chip0420_143686 PBMC +2135 CASRMGAGDTQYF TRBV10-2*01 TRBJ2-3*01 HLA-A*02:01 B2M MHCI GLCTLVAML BLMF1 EBV PMID:34811538 tetramer-sort yes amplicon-seq effector memory T cells T1D T1D_2 chip0420_249445 PBMC +2136 CSVDSGISTGELFF TRBV29-1*01 TRBJ2-2*01 HLA-A*02:01 B2M MHCI YLQQNWWTL LMP1 EBV PMID:34811538 tetramer-sort yes amplicon-seq Naive T cells T1D T1D_1 chip0420_858910 PBMC +2137 CASSSRSSYEQYF TRBV19*01 TRBJ2-7*01 HLA-A*02:01 B2M MHCI GILGFVFTL M1 InfluenzaA PMID:34811538 tetramer-sort yes amplicon-seq transitional T cells between effector and memory populations T1D T1D_1 chip0420_826970 PBMC +2138 CATQQGGDSQPQHF TRBV28*01 TRBJ1-5*01 HLA-A*02:01 B2M MHCI GLCTLVAML BLMF1 EBV PMID:34811538 tetramer-sort yes amplicon-seq effector memory T cells T1D T1D_1 chip0420_29820 PBMC +2139 CASGGPGQNYGYTF TRBV6-1*01 TRBJ1-2*01 HLA-A*02:01 B2M MHCI LLAGIGTVPI PGT HomoSapiens PMID:34811538 tetramer-sort yes amplicon-seq Naive T cells T1D T1D_1 chip0420_597258 PBMC +2140 CASSFGAGELFF TRBV19*01 TRBJ2-2*01 HLA-A*02:01 B2M MHCI GILGFVFTL M1 InfluenzaA PMID:34811538 tetramer-sort yes amplicon-seq transitional T cells between effector and memory populations T1D T1D_1 chip0420_522525 PBMC +2142 CASSAGQGLPYEQYF TRBV5-1*01 TRBJ2-7*01 HLA-A*02:01 B2M MHCI GILGFVFTL M1 InfluenzaA PMID:34811538 tetramer-sort yes amplicon-seq transitional T cells between effector and memory populations healthy healthy_1 chip0420_185935 PBMC +2144 CAPLIIQGAQKLVF TRAV41*01 TRAJ54*01 HLA-A*02:01 B2M MHCI LLAGIGTVPI PGT HomoSapiens PMID:34811538 tetramer-sort yes amplicon-seq effector memory T cells tet_neg chip0420_654641 PBMC +2146 CSVGSRGTNEKLFF TRBV29-1*01 TRBJ1-4*01 HLA-A*02:01 B2M MHCI GLCTLVAML BLMF1 EBV PMID:34811538 tetramer-sort yes amplicon-seq effector T cells T1D T1D_1 chip0420_152121 PBMC +2147 CASSDGRVHPGTQYF TRBV2*01 TRBJ2-5*01 HLA-A*02:01 B2M MHCI GLCTLVAML BLMF1 EBV PMID:34811538 tetramer-sort yes amplicon-seq effector memory T cells T1D T1D_1 chip0420_710527 PBMC +2148 CSVGTGGTNEKLFF TRBV29-1*01 TRBJ1-4*01 HLA-A*02:01 B2M MHCI GLCTLVAML BLMF1 EBV PMID:34811538 tetramer-sort yes amplicon-seq effector memory T cells T1D T1D_2 chip0420_334059 PBMC +2149 CSVGTGGTNEKLFF TRBV29-1*01 TRBJ1-4*01 HLA-A*02:01 B2M MHCI GLCTLVAML BLMF1 EBV PMID:34811538 tetramer-sort yes amplicon-seq effector T cells T1D T1D_2 chip0420_82729 PBMC +2150 CSVGSRGTNEKLFF TRBV29-1*01 TRBJ1-4*01 HLA-A*02:01 B2M MHCI GLCTLVAML BLMF1 EBV PMID:34811538 tetramer-sort yes amplicon-seq effector memory T cells T1D T1D_1 chip0420_31217 PBMC +2151 CATSGRSTDTQYF TRBV19*01 TRBJ2-3*01 HLA-A*02:01 B2M MHCI GILGFVFTL M1 InfluenzaA PMID:34811538 tetramer-sort yes amplicon-seq transitional T cells between effector and memory populations T1D T1D_2 chip0420_863595 PBMC +2152 CILRRYGGSQGNLIF TRAV26-2*01 TRAJ42*01 CASSPVSGSTYEQYF TRBV3-1*01 TRBJ2-7*01 HLA-A*02:01 B2M MHCI GLCTLVAML BLMF1 EBV PMID:34811538 tetramer-sort yes amplicon-seq effector T cells T1D T1D_1 chip0420_399995 PBMC +2153 CATQQGRDSQPQHF TRBV28*01 TRBJ1-5*01 HLA-A*02:01 B2M MHCI GLCTLVAML BLMF1 EBV PMID:34811538 tetramer-sort yes amplicon-seq effector memory T cells T1D T1D_1 chip0420_102744 PBMC +2154 CAESTSGGKLIF TRAV5*01 TRAJ23*01 CSVGTGGTNEKLFF TRBV29-1*01 TRBJ1-4*01 HLA-A*02:01 B2M MHCI GLCTLVAML BLMF1 EBV PMID:34811538 tetramer-sort yes amplicon-seq effector memory T cells T1D T1D_2 chip0420_762528 PBMC +2155 CAAYAGNMLTF TRAV29/DV5*01 TRAJ39*01 CASRMGAGDTQYF TRBV10-2*01 TRBJ2-3*01 HLA-A*02:01 B2M MHCI GLCTLVAML BLMF1 EBV PMID:34811538 tetramer-sort yes amplicon-seq effector memory T cells T1D T1D_2 chip0420_265016 PBMC +2156 CVVNGEDSSYKLIF TRAV12-1*01 TRAJ12*01 CASSEGRVSPGEAFL TRBV2*01 TRBJ1-1*01 HLA-A*02:01 B2M MHCI GLCTLVAML BLMF1 EBV PMID:34811538 tetramer-sort yes amplicon-seq effector memory T cells T1D T1D_1 chip0420_812870 PBMC +2157 CASSINGGRRDGYTF TRBV19*01 TRBJ1-2*01 HLA-A*02:01 B2M MHCI GILGFVFTL M1 InfluenzaA PMID:34811538 tetramer-sort yes amplicon-seq transitional T cells between effector and memory populations T1D T1D_1 chip0420_175883 PBMC +2158 CAMSEH*a?tTNARLMF TRAV8-6*01 TRAJ31*01 HLA-A*02:01 B2M MHCI YVLDHLIVV BRLF1 EBV PMID:34811538 tetramer-sort yes amplicon-seq effector memory T cells T1D T1D_2 chip0420_609415 PBMC +2160 CAPLLPRPYHLIW TRAV21*01,TRAV12-3*01 TRAJ33*01 CASSEDGMNTEAFF TRBV10-2*01 TRBJ1-1*01 HLA-A*02:01 B2M MHCI CLGGLLTMV LMP2A EBV PMID:34811538 tetramer-sort yes amplicon-seq central memory T cells T1D T1D_2 chip0420_84822 PBMC +2161 CASSQSPGGTQYF TRBV14*01 TRBJ2-3*01 HLA-A*02:01 B2M MHCI GLCTLVAML BLMF1 EBV PMID:34811538 tetramer-sort yes amplicon-seq effector T cells T1D T1D_1 chip0420_372727 PBMC +2162 CAASADTGNQFYF TRAV29/DV5*01 TRAJ49*01 CSVGSRGTNEKLFF TRBV29-1*01 TRBJ1-4*01 HLA-A*02:01 B2M MHCI RGPGRAFVTI GP160 HIV-1 PMID:34811538 tetramer-sort yes amplicon-seq Naive T cells T1D T1D_1 chip0420_137425 PBMC +2163 CASSQSRGSLWDTQYF TRBV4-3*01 TRBJ2-3*01 HLA-A*02:01 B2M MHCI YVLDHLIVV BRLF1 EBV PMID:34811538 tetramer-sort yes amplicon-seq effector memory T cells T1D T1D_2 chip0420_409658 PBMC +2166 CASSVTGTSAGELFF TRBV7-2*01 TRBJ2-2*01 HLA-A*02:01 B2M MHCI GILGFVFTL M1 InfluenzaA PMID:34811538 tetramer-sort yes amplicon-seq transitional T cells between effector and memory populations T1D T1D_1 chip0420_363685 PBMC +2168 CAVKDTDKLIF TRAV8-1*01 TRAJ34*01 CASSPHLGAAAEQYF TRBV19*01 TRBJ2-7*01 HLA-A*02:01 B2M MHCI YVLDHLIVV BRLF1 EBV PMID:34811538 tetramer-sort yes amplicon-seq effector T cells T1D T1D_1 chip0420_558845 PBMC +2169 CAGPGGSQGNLIF TRAV12-2*01 TRAJ42*01 CASSQTDPYEQYF TRBV5-4*01 TRBJ2-7*01 HLA-A*02:01 B2M MHCI LLSILCIWV ZNT8 HomoSapiens PMID:34811538 tetramer-sort yes amplicon-seq Naive T cells T1D T1D_1 chip0420_166015 PBMC +2170 CAGAGSQGNLIF TRAV27*01 TRAJ42*01 HLA-A*02:01 B2M MHCI GILGFVFTL M1 InfluenzaA PMID:34811538 tetramer-sort yes amplicon-seq effector T cells healthy healthy_1 chip0420_637615 PBMC +2171 CSVGTGGTNEKLFF TRBV29-1*01 TRBJ1-4*01 HLA-A*02:01 B2M MHCI GLCTLVAML BLMF1 EBV PMID:34811538 tetramer-sort yes amplicon-seq effector memory T cells T1D T1D_2 chip0420_425884 PBMC +2172 CSAADQTYNEQFF TRBV20-1*01 TRBJ2-1*01 HLA-A*02:01 B2M MHCI YVLDHLIVV BRLF1 EBV PMID:34811538 tetramer-sort yes amplicon-seq effector memory T cells T1D T1D_1 chip0420_116617 PBMC +2173 CASSPSTSGSGETQYF TRBV3-1*01 TRBJ2-5*01 HLA-A*02:01 B2M MHCI YVLDHLIVV BRLF1 EBV PMID:34811538 tetramer-sort yes amplicon-seq effector memory T cells T1D T1D_2 chip0420_214694 PBMC +2174 CASSSRLATDTQYF TRBV7-3*01,TRBV7-9*01 TRBJ2-3*01 HLA-B*08:01 B2M MHCI RAKFKQLL BZLF1 EBV PMID:34811538 tetramer-sort yes amplicon-seq effector memory T cells healthy healthy_2 chip0420_206155 PBMC +2176 CASSQSRGSLWDTQYF TRBV4-3*01 TRBJ2-3*01 HLA-A*02:01 B2M MHCI YVLDHLIVV BRLF1 EBV PMID:34811538 tetramer-sort yes amplicon-seq effector memory T cells T1D T1D_2 chip0420_23606 PBMC +2177 CASSQSPGGTQYF TRBV14*01 TRBJ2-3*01 HLA-A*02:01 B2M MHCI GLCTLVAML BLMF1 EBV PMID:34811538 tetramer-sort yes amplicon-seq effector memory T cells T1D T1D_1 chip0420_818967 PBMC +2179 CVVNGRDSSYKLIF TRAV12-1*01 TRAJ12*01 CASSDGRVHPGTQYF TRBV2*01 TRBJ2-5*01 HLA-A*02:01 B2M MHCI GLCTLVAML BLMF1 EBV PMID:34811538 tetramer-sort yes amplicon-seq effector memory T cells T1D T1D_1 chip0420_558300 PBMC +2180 CAMSQSNFGNEKLTF TRAV12-3*01 TRAJ48*01 HLA-A*02:01 B2M MHCI LLAGIGTVPI PGT HomoSapiens PMID:34811538 tetramer-sort yes amplicon-seq Naive T cells T1D T1D_1 chip0420_683614 PBMC +2182 CSVGTGGTNEKLFF TRBV29-1*01 TRBJ1-4*01 HLA-A*02:01 B2M MHCI GLCTLVAML BLMF1 EBV PMID:34811538 tetramer-sort yes amplicon-seq effector memory T cells T1D T1D_2 chip0420_82388 PBMC +2183 CASSLGQGAVYEQYF TRBV11-2*01 TRBJ2-7*01 HLA-A*02:01 B2M MHCI LLAGIGTVPI PGT HomoSapiens PMID:34811538 tetramer-sort yes amplicon-seq effector memory T cells T1D T1D_2 chip0420_688159 PBMC +2185 CASHSGGSTGDLFF TRBV27*01 TRBJ2-2*01 HLA-A*02:01 B2M MHCI KMYAFTLES ZNT8 HomoSapiens PMID:34811538 tetramer-sort yes amplicon-seq Naive T cells T1D T1D_1 chip0420_92464 PBMC +2188 CVVNGGDSSYKLIF TRAV12-1*01 TRAJ12*01 CASSSGQVLPNEQFF TRBV2*01 TRBJ2-1*01 HLA-A*02:01 B2M MHCI GLCTLVAML BLMF1 EBV PMID:34811538 tetramer-sort yes amplicon-seq effector T cells T1D T1D_1 chip0420_148040 PBMC +2189 CASSLEGLAENTQYF TRBV5-6*01 TRBJ2-3*01 HLA-A*02:01 B2M MHCI LLAGIGTVPI PGT HomoSapiens PMID:34811538 tetramer-sort yes amplicon-seq Naive T cells T1D T1D_2 chip0420_21883 PBMC +2191 CAVSLtg??gtQNFVF TRAV13-1*01 TRAJ26*01 HLA-A*02:01 B2M MHCI GILGFVFTL M1 InfluenzaA PMID:34811538 tetramer-sort yes amplicon-seq transitional T cells between effector and memory populations T1D T1D_1 chip0420_423737 PBMC +2192 CAASELTGANSKLTF TRAV29/DV5*01 TRAJ56*01 HLA-A*02:01 B2M MHCI GLCTLVAML BLMF1 EBV PMID:34811538 tetramer-sort yes amplicon-seq effector memory T cells tet_neg chip0420_321001 PBMC +2193 CASSTGQLSNTGELFF TRBV9*01 TRBJ2-2*01 HLA-A*02:01 B2M MHCI GLCTLVAML BLMF1 EBV PMID:34811538 tetramer-sort yes amplicon-seq effector memory T cells T1D T1D_1 chip0420_129144 PBMC +2194 CASRMGAGDTQYF TRBV10-2*01 TRBJ2-3*01 HLA-A*02:01 B2M MHCI GLCTLVAML BLMF1 EBV PMID:34811538 tetramer-sort yes amplicon-seq effector memory T cells T1D T1D_2 chip0420_857831 PBMC +2197 CASSPVSGSTYEQYF TRBV3-1*01 TRBJ2-7*01 HLA-A*02:01 B2M MHCI GLCTLVAML BLMF1 EBV PMID:34811538 tetramer-sort yes amplicon-seq effector memory T cells T1D T1D_1 chip0420_596892 PBMC +2198 CASSPSEGNTGELFF TRBV4-2*01 TRBJ2-2*01 HLA-A*02:01 B2M MHCI ALAGIGILTV MART1 HomoSapiens PMID:34811538 tetramer-sort yes amplicon-seq Naive T cells T1D T1D_2 chip0420_62503 PBMC +2200 CASSNPDRTERTEAFF TRBV19*01 TRBJ1-1*01 HLA-A*02:01 B2M MHCI GILGFVFTL M1 InfluenzaA PMID:34811538 tetramer-sort yes amplicon-seq central memory T cells healthy healthy_1 chip0420_220224 PBMC +2201 CASSSDRDYFNQPQHF TRBV28*01 TRBJ1-5*01 HLA-A*02:01 B2M MHCI KLVALGINAV NS3 HCV PMID:34811538 tetramer-sort yes amplicon-seq Naive T cells T1D T1D_1 chip0420_55582 PBMC +2202 CASSALLGGAYGYTF TRBV27*01 TRBJ1-2*01 HLA-A*02:01 B2M MHCI YVLDHLIVV BRLF1 EBV PMID:34811538 tetramer-sort yes amplicon-seq effector memory T cells T1D T1D_2 chip0420_805550 PBMC +2204 CASNLAGNNEQFF TRBV9*01 TRBJ2-1*01 HLA-A*02:01 B2M MHCI GLCTLVAML BLMF1 EBV PMID:34811538 tetramer-sort yes amplicon-seq effector memory T cells T1D T1D_2 chip0420_667881 PBMC +2205 CVVNLPNDYKLSF TRAV12-1*01 TRAJ20*01 CASSLAQVAGGNEQFF TRBV12-3*01,TRBV12-4*01 TRBJ2-1*01 HLA-A*02:01 B2M MHCI GLCTLVAML BLMF1 EBV PMID:34811538 tetramer-sort yes amplicon-seq transitional T cells between effector and memory populations T1D T1D_2 chip0420_709919 PBMC +2206 CASILAGEPDTQYF TRBV10-2*01 TRBJ2-3*01 HLA-A*02:01 B2M MHCI GILGFVFTL M1 InfluenzaA PMID:34811538 tetramer-sort yes amplicon-seq Naive T cells T1D T1D_2 chip0420_708503 PBMC +2207 CTSSTGASGYTF TRBV19*01 TRBJ1-2*01 HLA-A*02:01 B2M MHCI GILGFVFTL M1 InfluenzaA PMID:34811538 tetramer-sort yes amplicon-seq transitional T cells between effector and memory populations T1D T1D_2 chip0420_654327 PBMC +2208 CASSPVSGSTYEQYF TRBV3-1*01 TRBJ2-7*01 HLA-A*02:01 B2M MHCI GLCTLVAML BLMF1 EBV PMID:34811538 tetramer-sort yes amplicon-seq effector memory T cells T1D T1D_1 chip0420_452897 PBMC +2210 CAGRVDGGATNKLIF TRAV35*01 TRAJ32*01 HLA-A*02:01 B2M MHCI LLAGIGTVPI PGT HomoSapiens PMID:34811538 tetramer-sort yes amplicon-seq central memory T cells T1D T1D_2 chip0420_252637 PBMC +2212 CAVSDtt?GNDMRF TRAV8-4*01 TRAJ43*01 CSVGSRGTNEKLFF TRBV29-1*01 TRBJ1-4*01 HLA-A*02:01 B2M MHCI GLCTLVAML BLMF1 EBV PMID:34811538 tetramer-sort yes amplicon-seq effector T cells T1D T1D_1 chip0420_319580 PBMC +2214 CAVDPWGNQFYF TRAV39*01 TRAJ49*01 CATQQGRDSQPQHF TRBV28*01 TRBJ1-5*01 HLA-A*02:01 B2M MHCI GLCTLVAML BLMF1 EBV PMID:34811538 tetramer-sort yes amplicon-seq effector memory T cells T1D T1D_1 chip0420_93264 PBMC +2215 CASSTGQLSNTGELFF TRBV9*01 TRBJ2-2*01 HLA-A*02:01 B2M MHCI GLCTLVAML BLMF1 EBV PMID:34811538 tetramer-sort yes amplicon-seq effector T cells T1D T1D_1 chip0420_367481 PBMC +2216 CAVKDTDKLIF TRAV8-1*01 TRAJ34*01 CAWSVQLAGVDEQYF TRBV30*01 TRBJ2-7*01 HLA-A*02:01 B2M MHCI YVLDHLIVV BRLF1 EBV PMID:34811538 tetramer-sort yes amplicon-seq effector memory T cells T1D T1D_2 chip0420_590918 PBMC +2217 CSVGSRGTNGKLFF TRBV29-1*01 TRBJ1-4*01 HLA-A*02:01 B2M MHCI GLCTLVAML BLMF1 EBV PMID:34811538 tetramer-sort yes amplicon-seq effector memory T cells T1D T1D_1 chip0420_475266 PBMC +2218 CASSTGQLSNTGELFF TRBV9*01 TRBJ2-2*01 HLA-A*02:01 B2M MHCI GLCTLVAML BLMF1 EBV PMID:34811538 tetramer-sort yes amplicon-seq effector memory T cells T1D T1D_1 chip0420_55165 PBMC +2219 CAVSDRDGGFKTIF TRAV8-4*01 TRAJ9*01 HLA-A*02:01 B2M MHCI GILGFVFTL M1 InfluenzaA PMID:34811538 tetramer-sort yes amplicon-seq transitional T cells between effector and memory populations T1D T1D_1 chip0420_37109 PBMC +2220 CASSLNAGEWYGYTF TRBV11-2*01 TRBJ1-2*01 HLA-A*02:01 B2M MHCI GLCTLVAML BLMF1 EBV PMID:34811538 tetramer-sort yes amplicon-seq effector memory T cells T1D T1D_2 chip0420_560914 PBMC +2221 CVVNGRDSSYKLIF TRAV12-1*01 TRAJ12*01 CASSSGLVAPGELFF TRBV2*01 TRBJ2-2*01 HLA-A*02:01 B2M MHCI GLCTLVAML BLMF1 EBV PMID:34811538 tetramer-sort yes amplicon-seq effector memory T cells T1D T1D_2 chip0420_373424 PBMC +2222 CAEPYGGSQGNLIF TRAV12-2*01 TRAJ42*01 CASSPGGAGNTIYF TRBV27*01 TRBJ1-3*01 HLA-A*02:01 B2M MHCI KIVALGINAV POL HCV PMID:34811538 tetramer-sort yes amplicon-seq natural killer-like T cells T1D T1D_1 chip0420_306563 PBMC +2223 CSVGSRGTNEKLFF TRBV29-1*01 TRBJ1-4*01 HLA-A*02:01 B2M MHCI GLCTLVAML BLMF1 EBV PMID:34811538 tetramer-sort yes amplicon-seq effector memory T cells T1D T1D_1 chip0420_812786 PBMC +2224 CASRMGAGDTQYF TRBV10-2*01 TRBJ2-3*01 HLA-A*02:01 B2M MHCI GLCTLVAML BLMF1 EBV PMID:34811538 tetramer-sort yes amplicon-seq effector memory T cells T1D T1D_2 chip0420_699238 PBMC +2225 CSVGTGGTNEKLFF TRBV29-1*01 TRBJ1-4*01 HLA-A*02:01 B2M MHCI GLCTLVAML BLMF1 EBV PMID:34811538 tetramer-sort yes amplicon-seq transitional T cells between effector and memory populations T1D T1D_2 chip0420_269583 PBMC +2227 CSVGTGGTNEKLFF TRBV29-1*01 TRBJ1-4*01 HLA-A*02:01 B2M MHCI GLCTLVAML BLMF1 EBV PMID:34811538 tetramer-sort yes amplicon-seq transitional T cells between effector and memory populations T1D T1D_2 chip0420_183155 PBMC +2229 CAIARSNFGNEKLTF TRAV12-3*01 TRAJ48*01 CASSEGGSEQFF TRBV6-4*01 TRBJ2-1*01 HLA-A*02:01 B2M MHCI LLAGIGTVPI PGT HomoSapiens PMID:34811538 tetramer-sort yes amplicon-seq Naive T cells T1D T1D_1 chip0420_668255 PBMC +2232 CAAYAGNMLAF TRAV29/DV5*01 TRAJ39*01 CASRMGAGDTQYF TRBV10-2*01 TRBJ2-3*01 HLA-A*02:01 B2M MHCI GLCTLVAML BLMF1 EBV PMID:34811538 tetramer-sort yes amplicon-seq effector memory T cells T1D T1D_2 chip0420_23207 PBMC +2233 CAMSASNFGNEKLTF TRAV12-3*01 TRAJ48*01 HLA-A*02:01 B2M MHCI LLAGIGTVPI PGT HomoSapiens PMID:34811538 tetramer-sort yes amplicon-seq Naive T cells T1D T1D_1 chip0420_814687 PBMC +2234 CASSPVSGSTYEQYF TRBV3-1*01 TRBJ2-7*01 HLA-A*02:01 B2M MHCI GLCTLVAML BLMF1 EBV PMID:34811538 tetramer-sort yes amplicon-seq effector memory T cells T1D T1D_1 chip0420_28808 PBMC +2235 CATSDWLTNEQYF TRBV24-1*01 TRBJ2-7*01 HLA-A*02:01 B2M MHCI YVLDHLIVV BRLF1 EBV PMID:34811538 tetramer-sort yes amplicon-seq effector memory T cells T1D T1D_1 chip0420_782846 PBMC +2236 CASSVEGVWVETQYF TRBV9*01 TRBJ2-5*01 HLA-A*02:01 B2M MHCI FLWSVFWLI IGRP HomoSapiens PMID:34811538 tetramer-sort yes amplicon-seq Naive T cells T1D T1D_1 chip0420_707845 PBMC +2237 CVVNGGDSSYKLIF TRAV12-1*01 TRAJ12*01 CASSSGQVLPNEQFF TRBV2*01 TRBJ2-1*01 HLA-A*02:01 B2M MHCI GLCTLVAML BLMF1 EBV PMID:34811538 tetramer-sort yes amplicon-seq effector memory T cells T1D T1D_1 chip0420_211016 PBMC +2238 CAVSEAL*DTRGSRLTF TRAV41*01 TRAJ10*01 CASSTSGIYNEQFF TRBV27*01 TRBJ2-1*01 HLA-A*02:01 B2M MHCI GIIYIIYKL P3A CoxsackievirusB PMID:34811538 tetramer-sort yes amplicon-seq Naive T cells T1D T1D_2 chip0420_549976 PBMC +2240 CAVKDTDKLIF TRAV8-1*01 TRAJ34*01 CAWSVQLAGVDEQYF TRBV30*01 TRBJ2-7*01 HLA-A*02:01 B2M MHCI YVLDHLIVV BRLF1 EBV PMID:34811538 tetramer-sort yes amplicon-seq effector memory T cells T1D T1D_2 chip0420_4802 PBMC +2241 CAFMTHAGGACCGPLTF TRAV38-1*01 TRAJ52*01 HLA-A*02:01 B2M MHCI GILGFVFTL M1 InfluenzaA PMID:34811538 tetramer-sort yes amplicon-seq transitional T cells between effector and memory populations T1D T1D_1 chip0420_874123 PBMC +2242 CSVGTGGTNEKLFF TRBV29-1*01 TRBJ1-4*01 HLA-A*02:01 B2M MHCI GLCTLVAML BLMF1 EBV PMID:34811538 tetramer-sort yes amplicon-seq effector memory T cells T1D T1D_2 chip0420_651173 PBMC +2243 CSVGTGGTNEKLFF TRBV29-1*01 TRBJ1-4*01 HLA-A*02:01 B2M MHCI GLCTLVAML BLMF1 EBV PMID:34811538 tetramer-sort yes amplicon-seq effector memory T cells T1D T1D_2 chip0420_8479 PBMC +2244 CSVGSRGTNEKLFF TRBV29-1*01 TRBJ1-4*01 HLA-A*02:01 B2M MHCI GLCTLVAML BLMF1 EBV PMID:34811538 tetramer-sort yes amplicon-seq effector memory T cells T1D T1D_1 chip0420_308919 PBMC +2245 CAVPLGGFg?tGGSAQLVF TRAV20*01 TRAJ4*01 HLA-A*02:01 B2M MHCI GILGFVFTL M1 InfluenzaA PMID:34811538 tetramer-sort yes amplicon-seq transitional T cells between effector and memory populations T1D T1D_1 chip0420_715371 PBMC +2246 CASSVRAGETQYF TRBV19*01 TRBJ2-5*01 HLA-A*02:01 B2M MHCI GILGFVFTL M1 InfluenzaA PMID:34811538 tetramer-sort yes amplicon-seq transitional T cells between effector and memory populations T1D T1D_1 chip0420_814875 PBMC +2247 CAVPPNAGGTSYGKLTF TRAV12-2*01 TRAJ52*01 CSVGTGGTNEKLFF TRBV29-1*01 TRBJ1-4*01 HLA-A*02:01 B2M MHCI ALAGIGILTV MART1 HomoSapiens PMID:34811538 tetramer-sort yes amplicon-seq Naive T cells T1D T1D_1 chip0420_737795 PBMC +2248 CSAKGWTGVNEQFF TRBV20-1*01 TRBJ2-1*01 HLA-A*02:01 B2M MHCI LLAGIGTVPI PGT HomoSapiens PMID:34811538 tetramer-sort yes amplicon-seq Naive T cells T1D T1D_1 chip0420_630762 PBMC +2249 CSVDQRTGQKKNYGYTF TRBV29-1*01 TRBJ1-2*01 HLA-A*02:01 B2M MHCI GLCTLVAML BLMF1 EBV PMID:34811538 tetramer-sort yes amplicon-seq effector memory T cells T1D T1D_2 chip0420_563332 PBMC +2250 CILRRYGGSQGNLIF TRAV26-2*01 TRAJ42*01 HLA-A*02:01 B2M MHCI GLCTLVAML BLMF1 EBV PMID:34811538 tetramer-sort yes amplicon-seq effector memory T cells T1D T1D_1 chip0420_194863 PBMC +2251 CAVPLGCFc?tGGYNKLIF TRAV20*01 TRAJ4*01 CASSINGGRRDGYTF TRBV19*01 TRBJ1-2*01 HLA-A*02:01 B2M MHCI GILGFVFTL M1 InfluenzaA PMID:34811538 tetramer-sort yes amplicon-seq transitional T cells between effector and memory populations T1D T1D_1 chip0420_165071 PBMC +2252 CASRMGAGDTQYF TRBV10-2*01 TRBJ2-3*01 HLA-A*02:01 B2M MHCI GLCTLVAML BLMF1 EBV PMID:34811538 tetramer-sort yes amplicon-seq effector memory T cells T1D T1D_2 chip0420_133325 PBMC +2254 CSVGTGGTNEKLFF TRBV29-1*01 TRBJ1-4*01 HLA-A*02:01 B2M MHCI GLCTLVAML BLMF1 EBV PMID:34811538 tetramer-sort yes amplicon-seq effector T cells T1D T1D_2 chip0420_98126 PBMC +2255 CASSQEPTSGDTQYF TRBV3-1*01 TRBJ2-3*01 HLA-A*02:01 B2M MHCI YVLDHLIVV BRLF1 EBV PMID:34811538 tetramer-sort yes amplicon-seq effector memory T cells T1D T1D_1 chip0420_63126 PBMC +2256 CASSPTSGSIYEQFF TRBV3-1*01 TRBJ2-1*01 HLA-A*02:01 B2M MHCI GLCTLVAML BLMF1 EBV PMID:34811538 tetramer-sort yes amplicon-seq effector T cells T1D T1D_1 chip0420_683019 PBMC +2257 CASSPWGAGELFF TRBV4-1*01 TRBJ2-2*01 HLA-A*02:01 B2M MHCI LLAGIGTVPI PGT HomoSapiens PMID:34811538 tetramer-sort yes amplicon-seq Naive T cells T1D T1D_1 chip0420_202853 PBMC +2258 CATGGGSGYSTLTF TRAV17*01 TRAJ11*01 HLA-A*02:01 B2M MHCI FLYALALLL LMP2 EBV PMID:34811538 tetramer-sort yes amplicon-seq central memory T cells T1D T1D_1 chip0420_747801 PBMC +2261 CASSTGQLSNTGELFF TRBV9*01 TRBJ2-2*01 HLA-A*02:01 B2M MHCI GLCTLVAML BLMF1 EBV PMID:34811538 tetramer-sort yes amplicon-seq effector T cells T1D T1D_1 chip0420_245011 PBMC +2262 CASSTGQLSNTGELFF TRBV9*01 TRBJ2-2*01 HLA-A*02:01 B2M MHCI GLCTLVAML BLMF1 EBV PMID:34811538 tetramer-sort yes amplicon-seq effector memory T cells T1D T1D_1 chip0420_171533 PBMC +2263 CASRGTSLNEQFF TRBV10-2*01 TRBJ2-1*01 HLA-A*02:01 B2M MHCI GILGFVFTL M1 InfluenzaA PMID:34811538 tetramer-sort yes amplicon-seq Naive T cells T1D T1D_1 chip0420_445974 PBMC +2264 CASSFSHEQYF TRBV11-3*01 TRBJ2-7*01 HLA-A*02:01 B2M MHCI SLVALGINAV POL HCV PMID:34811538 tetramer-sort yes amplicon-seq Naive T cells T1D T1D_1 chip0420_490134 PBMC +2265 CASSSGGNVDTQYF TRBV7-3*01 TRBJ2-3*01 HLA-A*02:01 B2M MHCI GLCTLVAML BLMF1 EBV PMID:34811538 tetramer-sort yes amplicon-seq effector memory T cells T1D T1D_1 chip0420_80930 PBMC +2267 CARTTLPDRGSYEQYF TRBV5-6*01 TRBJ2-7*01 HLA-A*02:01 B2M MHCI LLAGIGTVPI PGT HomoSapiens PMID:34811538 tetramer-sort yes amplicon-seq Naive T cells T1D T1D_1 chip0420_11517 PBMC +2268 CARSLQGGSFYGYTF TRBV6-1*01 TRBJ1-2*01 HLA-A*02:01 B2M MHCI FLYALALLL LMP2 EBV PMID:34811538 tetramer-sort yes amplicon-seq central memory T cells T1D T1D_2 chip0420_99359 PBMC +2269 CSVGTGGTNEKLFF TRBV29-1*01 TRBJ1-4*01 HLA-A*02:01 B2M MHCI GLCTLVAML BLMF1 EBV PMID:34811538 tetramer-sort yes amplicon-seq effector memory T cells T1D T1D_2 chip0420_681635 PBMC +2270 CAVDPWGNPFYF TRAV39*01 TRAJ49*01 CATQQGRDSQPQHF TRBV28*01 TRBJ1-5*01 HLA-A*02:01 B2M MHCI GLCTLVAML BLMF1 EBV PMID:34811538 tetramer-sort yes amplicon-seq effector memory T cells T1D T1D_1 chip0420_253787 PBMC +2271 CASSQEGGGAYEQYF TRBV4-2*01 TRBJ2-7*01 HLA-A*02:01 B2M MHCI YLQQNWWTL LMP1 EBV PMID:34811538 tetramer-sort yes amplicon-seq central memory T cells T1D T1D_2 chip0420_448040 PBMC +2272 CATQQGRDSQPQHF TRBV28*01 TRBJ1-5*01 HLA-A*02:01 B2M MHCI GLCTLVAML BLMF1 EBV PMID:34811538 tetramer-sort yes amplicon-seq effector memory T cells T1D T1D_1 chip0420_390627 PBMC +2273 CAAYAGNMLTF TRAV29/DV5*01 TRAJ39*01 CASRMGAGDTQYF TRBV10-2*01 TRBJ2-3*01 HLA-A*02:01 B2M MHCI GLCTLVAML BLMF1 EBV PMID:34811538 tetramer-sort yes amplicon-seq effector memory T cells T1D T1D_2 chip0420_35479 PBMC +2274 CAVSSGGYNKLIF TRAV12-2*01 TRAJ4*01 HLA-A*02:01 B2M MHCI GILGFVFTL M1 InfluenzaA PMID:34811538 tetramer-sort yes amplicon-seq transitional T cells between effector and memory populations T1D T1D_1 chip0420_662496 PBMC +2276 CATQQGRDSQPQHF TRBV28*01 TRBJ1-5*01 HLA-A*02:01 B2M MHCI GLCTLVAML BLMF1 EBV PMID:34811538 tetramer-sort yes amplicon-seq effector T cells T1D T1D_1 chip0420_859360 PBMC +2277 CVVNGPAGNQLTF TRAV12-1*01 TRAJ17*01 CTSSLSTGPLYEQYF TRBV5-6*01 TRBJ2-7*01 HLA-A*02:01 B2M MHCI LLAGIGTVPI PGT HomoSapiens PMID:34811538 tetramer-sort yes amplicon-seq Naive T cells T1D T1D_1 chip0420_585854 PBMC +2279 CADLVCW??cFARSLLW TRAV36/DV7*01 TRAJ38*01 HLA-A*02:01 B2M MHCI GLCTLVAML BLMF1 EBV PMID:34811538 tetramer-sort yes amplicon-seq effector memory T cells T1D T1D_1 chip0420_609294 PBMC +2280 CASSTGQLSNTGELFF TRBV9*01 TRBJ2-2*01 HLA-A*02:01 B2M MHCI GLCTLVAML BLMF1 EBV PMID:34811538 tetramer-sort yes amplicon-seq effector memory T cells T1D T1D_1 chip0420_412327 PBMC +2281 CATEGDSGYSTLTF TRAV17*01 TRAJ11*01 HLA-A*02:01 B2M MHCI FLYALALLL LMP2 EBV PMID:34811538 tetramer-sort yes amplicon-seq central memory T cells T1D T1D_1 chip0420_216815 PBMC +2282 CASSMGAHGYTF TRBV19*01 TRBJ1-2*01 HLA-A*02:01 B2M MHCI GILGFVFTL M1 InfluenzaA PMID:34811538 tetramer-sort yes amplicon-seq transitional T cells between effector and memory populations T1D T1D_1 chip0420_612642 PBMC +2283 CASSYMSGEAFF TRBV6-2*01,TRBV6-3*01 TRBJ1-1*01 HLA-A*02:01 B2M MHCI YVLDHLIVV BRLF1 EBV PMID:34811538 tetramer-sort yes amplicon-seq effector memory T cells T1D T1D_2 chip0420_773078 PBMC +2285 CASSQSPGGTQYF TRBV14*01 TRBJ2-3*01 HLA-A*02:01 B2M MHCI GLCTLVAML BLMF1 EBV PMID:34811538 tetramer-sort yes amplicon-seq effector memory T cells T1D T1D_1 chip0420_302252 PBMC +2287 CAISEGPLSSYNEQFF TRBV10-3*01 TRBJ2-1*01 HLA-A*02:01 B2M MHCI YVLDHLIVV BRLF1 EBV PMID:34811538 tetramer-sort yes amplicon-seq effector memory T cells T1D T1D_1 chip0420_5893 PBMC +2288 CASSSGQVLPNEQFF TRBV2*01 TRBJ2-1*01 HLA-A*02:01 B2M MHCI GLCTLVAML BLMF1 EBV PMID:34811538 tetramer-sort yes amplicon-seq effector memory T cells T1D T1D_1 chip0420_392575 PBMC +2289 CAESYDGYALNF TRAV5*01 TRAJ41*01 CASTPDINTEAFF TRBV6-1*01 TRBJ1-1*01 HLA-A*02:01 B2M MHCI GLCTLVAML BLMF1 EBV PMID:34811538 tetramer-sort yes amplicon-seq effector memory T cells T1D T1D_2 chip0420_216282 PBMC +2290 CVAGT*ct??acGPPFAF TRAV12-1*01 TRAJ26*01 CASSLPGRREGRDNEQFF TRBV12-3*01,TRBV12-4*01 TRBJ2-1*01 HLA-A*02:01 B2M MHCI LNIDLLWSV IGRP HomoSapiens PMID:34811538 tetramer-sort yes amplicon-seq Naive T cells T1D T1D_1 chip0420_136984 PBMC +2291 CASRILDRANLNTEAFF TRBV19*01 TRBJ1-1*01 HLA-A*02:01 B2M MHCI GILGFVFTL M1 InfluenzaA PMID:34811538 tetramer-sort yes amplicon-seq Naive T cells T1D T1D_1 chip0420_60319 PBMC +2293 CSVGSRGTNEKLFF TRBV29-1*01 TRBJ1-4*01 HLA-A*02:01 B2M MHCI GLCTLVAML BLMF1 EBV PMID:34811538 tetramer-sort yes amplicon-seq effector memory T cells T1D T1D_1 chip0420_301342 PBMC +2294 CGPAEPNDYKLSF TRAV30*01 TRAJ20*01 CASSTGQLSNTGELFF TRBV9*01 TRBJ2-2*01 HLA-A*02:01 B2M MHCI GLCTLVAML BLMF1 EBV PMID:34811538 tetramer-sort yes amplicon-seq effector T cells T1D T1D_1 chip0420_577227 PBMC +2295 CSVGSRGTNEKLFF TRBV29-1*01 TRBJ1-4*01 HLA-A*02:01 B2M MHCI GLCTLVAML BLMF1 EBV PMID:34811538 tetramer-sort yes amplicon-seq effector T cells T1D T1D_1 chip0420_320613 PBMC +2297 CASRMGAGDTQYF TRBV10-2*01 TRBJ2-3*01 HLA-A*02:01 B2M MHCI GLCTLVAML BLMF1 EBV PMID:34811538 tetramer-sort yes amplicon-seq effector memory T cells T1D T1D_2 chip0420_777383 PBMC +2298 CATEGASGYSTLTF TRAV17*01 TRAJ11*01 HLA-A*02:01 B2M MHCI FLYALALLL LMP2 EBV PMID:34811538 tetramer-sort yes amplicon-seq central memory T cells T1D T1D_1 chip0420_31771 PBMC +2299 CAGPTPNYGGSQGNLIF TRAV35*01 TRAJ42*01 CASSPRANTGELFF TRBV13*01 TRBJ2-2*01 HLA-A*02:01 B2M MHCI ALAGIGILTV MART1 HomoSapiens PMID:34811538 tetramer-sort yes amplicon-seq Naive T cells T1D T1D_2 chip0420_792972 PBMC +2300 CATSISNFGHEKLTF TRAV12-3*01 TRAJ48*01 CASSQDGVKGVGEQYF TRBV14*01 TRBJ2-7*01 HLA-A*02:01 B2M MHCI LLAGIGTVPI PGT HomoSapiens PMID:34811538 tetramer-sort yes amplicon-seq Naive T cells T1D T1D_1 chip0420_629590 PBMC +2301 CASSIGSYGYTF TRBV19*01 TRBJ1-2*01 HLA-A*02:01 B2M MHCI GILGFVFTL M1 InfluenzaA PMID:34811538 tetramer-sort yes amplicon-seq transitional T cells between effector and memory populations T1D T1D_1 chip0420_570090 PBMC +2306 CSDRDGGNYGYTF TRBV29-1*01 TRBJ1-2*01 HLA-A*02:01 B2M MHCI YVLDHLIVV BRLF1 EBV PMID:34811538 tetramer-sort yes amplicon-seq effector memory T cells T1D T1D_2 chip0420_795805 PBMC +2307 CASSPSTSGSGETQYF TRBV3-1*01 TRBJ2-5*01 HLA-A*02:01 B2M MHCI YVLDHLIVV BRLF1 EBV PMID:34811538 tetramer-sort yes amplicon-seq effector memory T cells T1D T1D_2 chip0420_644132 PBMC +2310 CASRAGAGDTQYF TRBV10-2*01 TRBJ2-3*01 HLA-A*02:01 B2M MHCI GLCTLVAML BLMF1 EBV PMID:34811538 tetramer-sort yes amplicon-seq effector T cells T1D T1D_2 chip0420_336255 PBMC +2311 CASSINGGRRDGYTF TRBV19*01 TRBJ1-2*01 HLA-A*02:01 B2M MHCI GILGFVFTL M1 InfluenzaA PMID:34811538 tetramer-sort yes amplicon-seq effector T cells T1D T1D_1 chip0420_257440 PBMC +2313 CAAYAGNMLAF TRAV29/DV5*01 TRAJ39*01 CASRMGAGDTQYF TRBV10-2*01 TRBJ2-3*01 HLA-A*02:01 B2M MHCI GLCTLVAML BLMF1 EBV PMID:34811538 tetramer-sort yes amplicon-seq effector memory T cells T1D T1D_2 chip0420_636606 PBMC +2314 CSVGTGGTNEKLFF TRBV29-1*01 TRBJ1-4*01 HLA-A*02:01 B2M MHCI GLCTLVAML BLMF1 EBV PMID:34811538 tetramer-sort yes amplicon-seq effector memory T cells T1D T1D_2 chip0420_517119 PBMC +2315 CALYNTDKLIF TRAV9-2*01 TRAJ34*01 HLA-A*02:01 B2M MHCI GLCTLVAML BLMF1 EBV PMID:34811538 tetramer-sort yes amplicon-seq effector memory T cells T1D T1D_1 chip0420_402322 PBMC +2316 CILRRYGGSQRNLIF TRAV26-2*01 TRAJ42*01 CASSPVSGSTYEQYF TRBV3-1*01 TRBJ2-7*01 HLA-A*02:01 B2M MHCI GLCTLVAML BLMF1 EBV PMID:34811538 tetramer-sort yes amplicon-seq effector memory T cells T1D T1D_1 chip0420_71988 PBMC +2317 CSVGTGGTNEKLFF TRBV29-1*01 TRBJ1-4*01 HLA-A*02:01 B2M MHCI GLCTLVAML BLMF1 EBV PMID:34811538 tetramer-sort yes amplicon-seq effector T cells T1D T1D_2 chip0420_5845 PBMC +2318 CAESEPKa?tNNARLMF TRAV8-6*01 TRAJ31*01 HLA-A*02:01 B2M MHCI YVLDHLIVV BRLF1 EBV PMID:34811538 tetramer-sort yes amplicon-seq effector T cells T1D T1D_2 chip0420_883660 PBMC +2319 CILRRYGGSQGNLIF TRAV26-2*01 TRAJ42*01 CASSPVSGSTYEQYF TRBV3-1*01 TRBJ2-7*01 HLA-A*02:01 B2M MHCI GLCTLVAML BLMF1 EBV PMID:34811538 tetramer-sort yes amplicon-seq effector T cells T1D T1D_1 chip0420_882637 PBMC +2320 CSVGSRGTNEKLFF TRBV29-1*01 TRBJ1-4*01 HLA-A*02:01 B2M MHCI GLCTLVAML BLMF1 EBV PMID:34811538 tetramer-sort yes amplicon-seq effector memory T cells T1D T1D_1 chip0420_60944 PBMC +2321 CAVDENPLNYGGSQGNLIF TRAV39*01 TRAJ42*01 CASSRTSTDTQYF TRBV19*01 TRBJ2-3*01 HLA-A*02:01 B2M MHCI GILGFVFTL M1 InfluenzaA PMID:34811538 tetramer-sort yes amplicon-seq transitional T cells between effector and memory populations T1D T1D_1 chip0420_779315 PBMC +2322 CVVNGRDSSYKLIF TRAV12-1*01 TRAJ12*01 CASSSGLVAPGELFF TRBV2*01 TRBJ2-2*01 HLA-A*02:01 B2M MHCI GLCTLVAML BLMF1 EBV PMID:34811538 tetramer-sort yes amplicon-seq effector T cells T1D T1D_2 chip0420_72626 PBMC +2323 CALRGFNKFYF TRAV29/DV5*01 TRAJ21*01 CASRSPGLGSYNEQFF TRBV5-6*01 TRBJ2-1*01 HLA-A*02:01 B2M MHCI SLISGMWLL VP2 RotavirusA PMID:34811538 tetramer-sort yes amplicon-seq central memory T cells T1D T1D_1 chip0420_53014 PBMC +2325 CASSQSPGGTQYF TRBV14*01 TRBJ2-3*01 HLA-A*02:01 B2M MHCI GLCTLVAML BLMF1 EBV PMID:34811538 tetramer-sort yes amplicon-seq effector memory T cells T1D T1D_1 chip0420_560670 PBMC +2326 CAVDPIKIPDYTLSF TRAV2*01 TRAJ20*01 HLA-A*02:01 B2M MHCI LLAGIGTVPI PGT HomoSapiens PMID:34811538 tetramer-sort yes amplicon-seq Naive T cells T1D T1D_1 chip0420_617410 PBMC +2327 CASSPDQTSSYNEQFF TRBV27*01 TRBJ2-1*01 HLA-A*02:01 B2M MHCI YVLDHLIVV BRLF1 EBV PMID:34811538 tetramer-sort yes amplicon-seq effector memory T cells T1D T1D_1 chip0420_264701 PBMC +2328 CAVVSNSGYALNF TRAV21*01 TRAJ41*01 HLA-A*02:01 B2M MHCI GLCTLVAML BLMF1 EBV PMID:34811538 tetramer-sort yes amplicon-seq effector memory T cells T1D T1D_1 chip0420_176569 PBMC +2329 CAGRGGWVASGSSYNEQFF TRBV6-4*01 TRBJ2-1*01 HLA-A*02:01 B2M MHCI YVLDHLIVV BRLF1 EBV PMID:34811538 tetramer-sort yes amplicon-seq effector T cells T1D T1D_2 chip0420_374916 PBMC +2330 CASSIRSSYEQYF TRBV19*01 TRBJ2-7*01 HLA-A*02:01 B2M MHCI GILGFVFTL M1 InfluenzaA PMID:34811538 tetramer-sort yes amplicon-seq transitional T cells between effector and memory populations healthy healthy_1 chip0420_72764 PBMC +2331 CAAPPPNAGNMLTF TRAV29/DV5*01 TRAJ39*01 CASSPGTGGHEQYF TRBV7-9*01 TRBJ2-7*01 HLA-A*02:01 B2M MHCI GLCTLVAML BLMF1 EBV PMID:34811538 tetramer-sort yes amplicon-seq effector memory T cells T1D T1D_2 chip0420_780632 PBMC +2332 CSANAGQGLNEQFF TRBV20-1*01 TRBJ2-1*01 HLA-A*02:01 B2M MHCI LLAGIGTVPI PGT HomoSapiens PMID:34811538 tetramer-sort yes amplicon-seq Naive T cells T1D T1D_1 chip0420_458572 PBMC +2334 CAVEPAYYLRNLQYIF TRAV2*01 TRAJ40*01 HLA-A*02:01 B2M MHCI FLYALALLL LMP2 EBV PMID:34811538 tetramer-sort yes amplicon-seq effector memory T cells T1D T1D_1 chip0420_858382 PBMC +2335 CASSTGQLSNTGELFF TRBV9*01 TRBJ2-2*01 HLA-A*02:01 B2M MHCI GLCTLVAML BLMF1 EBV PMID:34811538 tetramer-sort yes amplicon-seq effector memory T cells T1D T1D_1 chip0420_835198 PBMC +2336 CASSTGQLSNTGELFF TRBV9*01 TRBJ2-2*01 HLA-A*02:01 B2M MHCI GLCTLVAML BLMF1 EBV PMID:34811538 tetramer-sort yes amplicon-seq effector T cells T1D T1D_1 chip0420_752191 PBMC +2337 CSVGSRGTNEKLFF TRBV29-1*01 TRBJ1-4*01 HLA-A*02:01 B2M MHCI GLCTLVAML BLMF1 EBV PMID:34811538 tetramer-sort yes amplicon-seq effector memory T cells T1D T1D_1 chip0420_225124 PBMC +2338 CTSSAGQGLPYEQYF TRBV5-1*01 TRBJ2-7*01 HLA-A*02:01 B2M MHCI GILGFVFTL M1 InfluenzaA PMID:34811538 tetramer-sort yes amplicon-seq transitional T cells between effector and memory populations healthy healthy_1 chip0420_157132 PBMC +2340 CASRAGAGDTQYF TRBV10-2*01 TRBJ2-3*01 HLA-A*02:01 B2M MHCI GLCTLVAML BLMF1 EBV PMID:34811538 tetramer-sort yes amplicon-seq transitional T cells between effector and memory populations T1D T1D_2 chip0420_158742 PBMC +2341 CASSQGGAGAADTQYF TRBV4-2*01 TRBJ2-3*01 HLA-A*02:01 B2M MHCI YVLDHLIVV BRLF1 EBV PMID:34811538 tetramer-sort yes amplicon-seq effector T cells T1D T1D_2 chip0420_183683 PBMC +2343 CAWSVQLAGVDEQYF TRBV30*01 TRBJ2-7*01 HLA-A*02:01 B2M MHCI YVLDHLIVV BRLF1 EBV PMID:34811538 tetramer-sort yes amplicon-seq transitional T cells between effector and memory populations T1D T1D_2 chip0420_809781 PBMC +2344 CAINEGPLSSYNEQFF TRBV10-3*01 TRBJ2-1*01 HLA-A*02:01 B2M MHCI YVLDHLIVV BRLF1 EBV PMID:34811538 tetramer-sort yes amplicon-seq effector memory T cells T1D T1D_1 chip0420_65373 PBMC +2345 CVVNGGDSSYKLIF TRAV12-1*01 TRAJ12*01 CASSSGQVLPNEQFF TRBV2*01 TRBJ2-1*01 HLA-A*02:01 B2M MHCI GLCTLVAML BLMF1 EBV PMID:34811538 tetramer-sort yes amplicon-seq effector memory T cells T1D T1D_1 chip0420_205337 PBMC +2346 CASSSGQVLPNEQFF TRBV2*01 TRBJ2-1*01 HLA-A*02:01 B2M MHCI GLCTLVAML BLMF1 EBV PMID:34811538 tetramer-sort yes amplicon-seq effector memory T cells T1D T1D_1 chip0420_847711 PBMC +2348 FASSPSTSGSG*TQYF TRBV3-1*01 TRBJ2-5*01 HLA-A*02:01 B2M MHCI YVLDHLIVV BRLF1 EBV PMID:34811538 tetramer-sort yes amplicon-seq effector memory T cells T1D T1D_2 chip0420_388843 PBMC +2349 CSVGTGGTNEKLFF TRBV29-1*01 TRBJ1-4*01 HLA-A*02:01 B2M MHCI GLCTLVAML BLMF1 EBV PMID:34811538 tetramer-sort yes amplicon-seq effector T cells T1D T1D_1 chip0420_319669 PBMC +2350 CGPEEPNDYKLSF TRAV30*01 TRAJ20*01 CASSTGQLSNTGELFF TRBV9*01 TRBJ2-2*01 HLA-A*02:01 B2M MHCI GLCTLVAML BLMF1 EBV PMID:34811538 tetramer-sort yes amplicon-seq effector T cells T1D T1D_1 chip0420_27313 PBMC +2351 CSVGSRGTNEKLFF TRBV29-1*01 TRBJ1-4*01 HLA-A*02:01 B2M MHCI GLCTLVAML BLMF1 EBV PMID:34811538 tetramer-sort yes amplicon-seq effector memory T cells T1D T1D_1 chip0420_523492 PBMC +2352 CGPEEPNDYKLSF TRAV30*01 TRAJ20*01 CASSTGQLSNTGELFF TRBV9*01 TRBJ2-2*01 HLA-A*02:01 B2M MHCI GLCTLVAML BLMF1 EBV PMID:34811538 tetramer-sort yes amplicon-seq effector T cells T1D T1D_1 chip0420_280413 PBMC +2356 CADLECW??cNSRKLIW TRAV36/DV7*01 TRAJ38*01 HLA-A*02:01 B2M MHCI GLCTLVAML BLMF1 EBV PMID:34811538 tetramer-sort yes amplicon-seq effector T cells T1D T1D_1 chip0420_443557 PBMC +2360 CAESTSGGKLIF TRAV5*01 TRAJ23*01 CSVGTGGTNEKLFF TRBV29-1*01 TRBJ1-4*01 HLA-A*02:01 B2M MHCI GLCTLVAML BLMF1 EBV PMID:34811538 tetramer-sort yes amplicon-seq effector T cells T1D T1D_2 chip0420_31224 PBMC +2361 CASSEWTGYQPQHF TRBV6-1*01 TRBJ1-5*01 HLA-A*02:01 B2M MHCI GLCTLVAML BLMF1 EBV PMID:34811538 tetramer-sort yes amplicon-seq effector memory T cells T1D T1D_2 chip0420_582785 PBMC +2363 CADLECW??cNNRKLIW TRAV36/DV7*01 TRAJ38*01 HLA-A*02:01 B2M MHCI GLCTLVAML BLMF1 EBV PMID:34811538 tetramer-sort yes amplicon-seq effector T cells T1D T1D_1 chip0420_202219 PBMC +2364 CASSLESGLLHNEQFF TRBV11-3*01 TRBJ2-1*01 HLA-A*02:01 B2M MHCI GLCTLVAML BLMF1 EBV PMID:34811538 tetramer-sort yes amplicon-seq effector memory T cells T1D T1D_2 chip0420_570161 PBMC +2366 CAVSGGFKTIF TRAV12-2*01 TRAJ9*01 HLA-A*02:01 B2M MHCI KLQVFLIVL IAPP HomoSapiens PMID:34811538 tetramer-sort yes amplicon-seq effector T cells T1D T1D_2 chip0420_758457 PBMC +2368 CASSPVSGSTYEQYF TRBV3-1*01 TRBJ2-7*01 HLA-A*02:01 B2M MHCI GLCTLVAML BLMF1 EBV PMID:34811538 tetramer-sort yes amplicon-seq effector memory T cells T1D T1D_1 chip0420_871565 PBMC +2369 CAVMARQag??ctAGNKLTF TRAV8-1*01 TRAJ17*01 CASSPSSRGTEAFF TRBV7-2*01 TRBJ1-1*01 HLA-A*02:01 B2M MHCI ALTAVAEEV PTPRN HomoSapiens PMID:34811538 tetramer-sort yes amplicon-seq Naive T cells T1D T1D_2 chip0420_182795 PBMC +2371 CSVGGSFYGYTF TRBV29-1*01 TRBJ1-2*01 HLA-A*02:01 B2M MHCI GLCTLVAML BLMF1 EBV PMID:34811538 tetramer-sort yes amplicon-seq effector memory T cells T1D T1D_2 chip0420_40411 PBMC +2372 CASSPINEQFF TRBV6-1*01 TRBJ2-1*01 HLA-A*02:01 B2M MHCI YVLDHLIVV BRLF1 EBV PMID:34811538 tetramer-sort yes amplicon-seq effector memory T cells T1D T1D_1 chip0420_438686 PBMC +2373 CAVKDTDKLIF TRAV8-1*01 TRAJ34*01 CASSHQASEQYF TRBV10-1*01 TRBJ2-7*01 HLA-A*02:01 B2M MHCI YVLDHLIVV BRLF1 EBV PMID:34811538 tetramer-sort yes amplicon-seq effector memory T cells T1D T1D_2 chip0420_249740 PBMC +2374 CAVKDTDKLIF TRAV8-1*01 TRAJ34*01 CAWSVQLAGVDEQYF TRBV30*01 TRBJ2-7*01 HLA-A*02:01 B2M MHCI YVLDHLIVV BRLF1 EBV PMID:34811538 tetramer-sort yes amplicon-seq effector memory T cells T1D T1D_2 chip0420_43632 PBMC +2375 CAVSPQKVTF TRAV8-1*01 TRAJ13*01 CASSDLAYEQYF TRBV7-8*01 TRBJ2-7*01 HLA-A*02:01 B2M MHCI YLLEMLWRL LMP1 EBV PMID:34811538 tetramer-sort yes amplicon-seq central memory T cells T1D T1D_2 chip0420_763033 PBMC +2377 CASSQDPLVAGGMQYF TRBV4-3*01 TRBJ2-3*01 HLA-A*02:01 B2M MHCI LLAGIGTVPI PGT HomoSapiens PMID:34811538 tetramer-sort yes amplicon-seq Naive T cells T1D T1D_2 chip0420_277978 PBMC +2378 CGTEEPNDYKLSF TRAV30*01 TRAJ20*01 HLA-A*02:01 B2M MHCI GLCTLVAML BLMF1 EBV PMID:34811538 tetramer-sort yes amplicon-seq effector T cells T1D T1D_1 chip0420_155956 PBMC +2379 CVVNGRDSSYKLIF TRAV12-1*01 TRAJ12*01 CASSSGLVAPGELFF TRBV2*01 TRBJ2-2*01 HLA-A*02:01 B2M MHCI GLCTLVAML BLMF1 EBV PMID:34811538 tetramer-sort yes amplicon-seq effector T cells T1D T1D_2 chip0420_113486 PBMC +2380 CASSQSRGSLWDTQYF TRBV4-3*01 TRBJ2-3*01 HLA-A*02:01 B2M MHCI YVLDHLIVV BRLF1 EBV PMID:34811538 tetramer-sort yes amplicon-seq effector T cells T1D T1D_2 chip0420_78425 PBMC +2381 CASSSGYEETQYF TRBV7-9*01 TRBJ2-5*01 HLA-A*02:01 B2M MHCI YVLDHLIVV BRLF1 EBV PMID:34811538 tetramer-sort yes amplicon-seq effector T cells T1D T1D_1 chip0420_726551 PBMC +2384 CASKHRGTYYEQYF TRBV28*01 TRBJ2-7*01 HLA-A*01:01 B2M MHCI LVSDGGPNLY PB1 InfluenzaA PMID:34811538 tetramer-sort yes amplicon-seq Naive T cells T1D T1D_3 chip0420_742978 PBMC +2385 CASSLTLEGGTEAFF TRBV5-1*01 TRBJ1-1*01 HLA-A*02:01 B2M MHCI FLWSVFWLI IGRP HomoSapiens PMID:34811538 tetramer-sort yes amplicon-seq Naive T cells T1D T1D_1 chip0420_202110 PBMC +2386 CNTQEGGYGYTF TRBV29-1*01 TRBJ1-2*01 HLA-A*02:01 B2M MHCI GLCTLVAML BLMF1 EBV PMID:34811538 tetramer-sort yes amplicon-seq effector memory T cells T1D T1D_1 chip0420_879700 PBMC +2387 CASSIRAGGSYEQYF TRBV28*01 TRBJ2-7*01 HLA-A*02:01 B2M MHCI YLLEMLWRL LMP1 EBV PMID:34811538 tetramer-sort yes amplicon-seq central memory T cells T1D T1D_1 chip0420_229985 PBMC +2388 CASSRRTLNSGANVLTF TRBV13*01 TRBJ2-6*01 HLA-A*02:01 B2M MHCI YVLDHLIVV BRLF1 EBV PMID:34811538 tetramer-sort yes amplicon-seq effector T cells T1D T1D_2 chip0420_548527 PBMC +2389 CASRGVPGELFF TRBV13*01 TRBJ2-2*01 HLA-A*02:01 B2M MHCI PLTFGWCYKL NEF InfluenzaA PMID:34811538 tetramer-sort yes amplicon-seq Naive T cells T1D T1D_1 chip0420_566388 PBMC +2390 CAESPSSGTYKYIF TRAV5*01 TRAJ40*01 HLA-A*02:01 B2M MHCI GLCTLVAML BLMF1 EBV PMID:34811538 tetramer-sort yes amplicon-seq effector memory T cells T1D T1D_2 chip0420_398119 PBMC +2392 CAESTSGGKLIF TRAV5*01 TRAJ23*01 CSVGTGGTNEKLFF TRBV29-1*01 TRBJ1-4*01 HLA-A*02:01 B2M MHCI GLCTLVAML BLMF1 EBV PMID:34811538 tetramer-sort yes amplicon-seq effector memory T cells T1D T1D_2 chip0420_813595 PBMC +2393 CATQQGRDSQPQHF TRBV28*01 TRBJ1-5*01 HLA-A*02:01 B2M MHCI GLCTLVAML BLMF1 EBV PMID:34811538 tetramer-sort yes amplicon-seq effector memory T cells T1D T1D_1 chip0420_142316 PBMC +2394 CSVGSRGTNEKLFF TRBV29-1*01 TRBJ1-4*01 HLA-A*02:01 B2M MHCI GLCTLVAML BLMF1 EBV PMID:34811538 tetramer-sort yes amplicon-seq effector T cells T1D T1D_1 chip0420_504254 PBMC +2395 CAVSDRDGGFKTIF TRAV8-4*01 TRAJ9*01 HLA-A*02:01 B2M MHCI GILGFVFTL M1 InfluenzaA PMID:34811538 tetramer-sort yes amplicon-seq transitional T cells between effector and memory populations T1D T1D_1 chip0420_78835 PBMC +2396 CASRAGAGDTQYF TRBV10-2*01 TRBJ2-3*01 HLA-A*02:01 B2M MHCI GLCTLVAML BLMF1 EBV PMID:34811538 tetramer-sort yes amplicon-seq effector memory T cells T1D T1D_2 chip0420_536948 PBMC +2398 CSVGTGGTNEKLFF TRBV29-1*01 TRBJ1-4*01 HLA-A*02:01 B2M MHCI GLCTLVAML BLMF1 EBV PMID:34811538 tetramer-sort yes amplicon-seq effector memory T cells T1D T1D_2 chip0420_228589 PBMC +2400 CSVGTGGTNEKLFF TRBV29-1*01 TRBJ1-4*01 HLA-A*02:01 B2M MHCI GLCTLVAML BLMF1 EBV PMID:34811538 tetramer-sort yes amplicon-seq effector memory T cells T1D T1D_2 chip0420_349275 PBMC +2401 CSVGTGGTNEKLFF TRBV29-1*01 TRBJ1-4*01 HLA-A*02:01 B2M MHCI GLCTLVAML BLMF1 EBV PMID:34811538 tetramer-sort yes amplicon-seq effector memory T cells T1D T1D_2 chip0420_192654 PBMC +2402 CVVNGRDSSYKLIF TRAV12-1*01 TRAJ12*01 HLA-A*02:01 B2M MHCI GLCTLVAML BLMF1 EBV PMID:34811538 tetramer-sort yes amplicon-seq effector T cells T1D T1D_1 chip0420_876784 PBMC +2404 CALSEAG??cTGNQFSF TRAV19*01 TRAJ49*01 HLA-A*02:01 B2M MHCI GILGFVFTL M1 InfluenzaA PMID:34811538 tetramer-sort yes amplicon-seq transitional T cells between effector and memory populations healthy healthy_1 chip0420_85755 PBMC +2405 CASKGIDGYTF TRBV13*01 TRBJ1-2*01 HLA-A*02:01 B2M MHCI YVLDHLIVV BRLF1 EBV PMID:34811538 tetramer-sort yes amplicon-seq effector memory T cells T1D T1D_2 chip0420_382446 PBMC +2406 CAVRDKAAGNKLTF TRAV3*01 TRAJ17*01 CATQEAGGIPDTQYF TRBV19*01 TRBJ2-3*01 HLA-A*02:01 B2M MHCI GIIYIIYKL P3A CoxsackievirusB PMID:34811538 tetramer-sort yes amplicon-seq transitional T cells between effector and memory populations T1D T1D_2 chip0420_275841 PBMC +2407 CASSNGQGGEKLFF TRBV12-3*01,TRBV12-4*01 TRBJ1-4*01 HLA-A*02:01 B2M MHCI LLAGIGTVPI PGT HomoSapiens PMID:34811538 tetramer-sort yes amplicon-seq Naive T cells T1D T1D_2 chip0420_193374 PBMC +2408 CARSIVPAGELFF TRBV19*01 TRBJ2-2*01 HLA-A*02:01 B2M MHCI GLCTLVAML BLMF1 EBV PMID:34811538 tetramer-sort yes amplicon-seq effector memory T cells T1D T1D_2 chip0420_807957 PBMC +2409 CASSTGTPVFF TRBV19*01 TRBJ2-1*01 HLA-A*02:01 B2M MHCI GILGFVFTL M1 InfluenzaA PMID:34811538 tetramer-sort yes amplicon-seq effector T cells T1D T1D_1 chip0420_805683 PBMC +2411 CAVRVWAGF TRAV3*01 TRAJ34*01 HLA-B*08:01 B2M MHCI RAKFKQLL BZLF1 EBV PMID:34811538 tetramer-sort yes amplicon-seq effector memory T cells T1D T1D_3 chip0420_854188 PBMC +2412 CAVKDTDKLIF TRAV8-1*01 TRAJ34*01 HLA-A*02:01 B2M MHCI YVLDHLIVV BRLF1 EBV PMID:34811538 tetramer-sort yes amplicon-seq effector memory T cells T1D T1D_2 chip0420_702845 PBMC +2413 CSVGTGGTNEKLFF TRBV29-1*01 TRBJ1-4*01 HLA-A*02:01 B2M MHCI GLCTLVAML BLMF1 EBV PMID:34811538 tetramer-sort yes amplicon-seq effector memory T cells T1D T1D_2 chip0420_639245 PBMC +2417 CSVGSRGTNEKLFF TRBV29-1*01 TRBJ1-4*01 HLA-A*02:01 B2M MHCI GLCTLVAML BLMF1 EBV PMID:34811538 tetramer-sort yes amplicon-seq effector memory T cells T1D T1D_1 chip0420_465922 PBMC +2418 CASSPDQTSSYNEQFF TRBV27*01 TRBJ2-1*01 HLA-A*02:01 B2M MHCI YVLDHLIVV BRLF1 EBV PMID:34811538 tetramer-sort yes amplicon-seq effector memory T cells T1D T1D_1 chip0420_391935 PBMC +2419 CSVGTGGTNEKLFF TRBV29-1*01 TRBJ1-4*01 HLA-A*02:01 B2M MHCI GLCTLVAML BLMF1 EBV PMID:34811538 tetramer-sort yes amplicon-seq effector memory T cells T1D T1D_2 chip0420_260243 PBMC +2420 CASSQSPGGTQYF TRBV14*01 TRBJ2-3*01 HLA-A*02:01 B2M MHCI GLCTLVAML BLMF1 EBV PMID:34811538 tetramer-sort yes amplicon-seq effector memory T cells T1D T1D_1 chip0420_730694 PBMC +2421 CVVNGRDSSYKLIF TRAV12-1*01 TRAJ12*01 CASSSGLVAPGELFF TRBV2*01 TRBJ2-2*01 HLA-A*02:01 B2M MHCI GLCTLVAML BLMF1 EBV PMID:34811538 tetramer-sort yes amplicon-seq effector memory T cells T1D T1D_2 chip0420_71491 PBMC +2423 CAVMGFQKLVF TRAV12-2*01 TRAJ8*01 HLA-A*02:01 B2M MHCI LLAGIGTVPI PGT HomoSapiens PMID:34811538 tetramer-sort yes amplicon-seq Naive T cells T1D T1D_2 chip0420_824157 PBMC +2424 CAVSGTSYGKLTF TRAV12-2*01 TRAJ52*01 CASSFGGQPQHF TRBV13*01 TRBJ1-5*01 HLA-A*02:01 B2M MHCI ALAGIGILTV MART1 HomoSapiens PMID:34811538 tetramer-sort yes amplicon-seq central memory T cells T1D T1D_2 chip0420_715669 PBMC +2426 CASLTPGASPIIF TRAV8-6*01 TRAJ3*01 CASCSGLVAPGELFF TRBV2*01 TRBJ2-2*01 HLA-A*02:01 B2M MHCI GLCTLVAML BLMF1 EBV PMID:34811538 tetramer-sort yes amplicon-seq effector memory T cells T1D T1D_2 chip0420_858358 PBMC +2428 CASSRRTLNSGANVLTF TRBV13*01 TRBJ2-6*01 HLA-A*02:01 B2M MHCI YVLDHLIVV BRLF1 EBV PMID:34811538 tetramer-sort yes amplicon-seq effector memory T cells T1D T1D_2 chip0420_245491 PBMC +2429 CAVQRGga??gcNYQLIW TRAV1-2*01 TRAJ33*01 HLA-A*02:01 B2M MHCI GLCTLVAML BLMF1 EBV PMID:34811538 tetramer-sort yes amplicon-seq effector T cells T1D T1D_1 chip0420_793645 PBMC +2430 CAVMDDMRF TRAV12-2*01 TRAJ43*01 CASRKGDSPLPF TRBV7-9*01 TRBJ1-6*01 HLA-A*02:01 B2M MHCI LLAGIGTVPI PGT HomoSapiens PMID:34811538 tetramer-sort yes amplicon-seq Naive T cells T1D T1D_1 chip0420_594378 PBMC +2431 CASSLQGGNYGYTF TRBV6-5*01 TRBJ1-2*01 HLA-A*02:01 B2M MHCI FLYALALLL LMP2 EBV PMID:34811538 tetramer-sort yes amplicon-seq central memory T cells T1D T1D_2 chip0420_495152 PBMC +2432 CGRDAKIIF TRAV17*01 TRAJ30*01 HLA-A*02:01 B2M MHCI GIIYIIYKL P3A CoxsackievirusB PMID:34811538 tetramer-sort yes amplicon-seq effector memory T cells T1D T1D_1 chip0420_449246 PBMC +2433 CGTEEPSDYRLSF TRAV30*01 TRAJ20*01 CASRTGQLSNTGELFF TRBV9*01 TRBJ2-2*01 HLA-A*02:01 B2M MHCI GLCTLVAML BLMF1 EBV PMID:34811538 tetramer-sort yes amplicon-seq effector T cells T1D T1D_1 chip0420_827604 PBMC +2434 CASSAGVGTEAFF TRAV14/DV4*01 TRAJ40*01 CASSAGVGTEAFF TRBV2*01 TRBJ1-1*01 HLA-A*02:01 B2M MHCI LLAGIGTVPI PGT HomoSapiens PMID:34811538 tetramer-sort yes amplicon-seq Naive T cells T1D T1D_1 chip0420_398853 PBMC +2435 CASSLQGGNYGHTF TRBV6-5*01 TRBJ1-2*01 HLA-A*02:01 B2M MHCI FLYALALLL LMP2 EBV PMID:34811538 tetramer-sort yes amplicon-seq central memory T cells T1D T1D_2 chip0420_134880 PBMC +2436 CASSQSPGGTQYF TRBV14*01 TRBJ2-3*01 HLA-A*02:01 B2M MHCI GLCTLVAML BLMF1 EBV PMID:34811538 tetramer-sort yes amplicon-seq effector T cells T1D T1D_1 chip0420_608120 PBMC +2437 CAVKRRAAGNKLTF TRAV12-2*01 TRAJ17*01 CASTDTLSLINTGELFF TRBV28*01 TRBJ2-2*01 HLA-A*02:01 B2M MHCI YVLDHLIVV BRLF1 EBV PMID:34811538 tetramer-sort yes amplicon-seq effector memory T cells T1D T1D_2 chip0420_301538 PBMC +2438 CVVNGRDSSYKLIF TRAV12-1*01 TRAJ12*01 CASSSGLVAPGELFF TRBV2*01 TRBJ2-2*01 HLA-A*02:01 B2M MHCI GLCTLVAML BLMF1 EBV PMID:34811538 tetramer-sort yes amplicon-seq effector T cells T1D T1D_2 chip0420_230696 PBMC +2439 CSVDQRTGQKKNYGYTF TRBV29-1*01 TRBJ1-2*01 HLA-A*02:01 B2M MHCI GLCTLVAML BLMF1 EBV PMID:34811538 tetramer-sort yes amplicon-seq effector memory T cells T1D T1D_2 chip0420_199551 PBMC +2440 CASRMGAGDTQYF TRBV10-2*01 TRBJ2-3*01 HLA-A*02:01 B2M MHCI GLCTLVAML BLMF1 EBV PMID:34811538 tetramer-sort yes amplicon-seq effector memory T cells T1D T1D_2 chip0420_525589 PBMC +2442 CASSLAPLGQETQYF TRBV7-9*01 TRBJ2-5*01 HLA-A*02:01 B2M MHCI KMYAFTLES ZNT8 HomoSapiens PMID:34811538 tetramer-sort yes amplicon-seq effector T cells T1D T1D_2 chip0420_755559 PBMC +2443 CVVNGKDSSYKLIF TRAV12-1*01 TRAJ12*01 CASSGGAVAPSEQFF TRBV2*01 TRBJ2-1*01 HLA-A*02:01 B2M MHCI GLCTLVAML BLMF1 EBV PMID:34811538 tetramer-sort yes amplicon-seq effector memory T cells T1D T1D_2 chip0420_560694 PBMC +2444 CASRQPPGGTPSF TRBV14*01 TRBJ2-3*01 HLA-A*02:01 B2M MHCI GLCTLVAML BLMF1 EBV PMID:34811538 tetramer-sort yes amplicon-seq effector memory T cells T1D T1D_1 chip0420_217495 PBMC +2446 CASSLNAGEWYGYTF TRBV11-2*01 TRBJ1-2*01 HLA-A*02:01 B2M MHCI GLCTLVAML BLMF1 EBV PMID:34811538 tetramer-sort yes amplicon-seq effector memory T cells T1D T1D_2 chip0420_89142 PBMC +2447 CASLTPGASKIIF TRAV8-6*01 TRAJ3*01 CASSSGLVAPGELFF TRBV2*01 TRBJ2-2*01 HLA-A*02:01 B2M MHCI GLCTLVAML BLMF1 EBV PMID:34811538 tetramer-sort yes amplicon-seq effector memory T cells T1D T1D_2 chip0420_690971 PBMC +2448 CAESTSGGKLIF TRAV5*01 TRAJ23*01 CSVGTGGTNEKLFF TRBV29-1*01 TRBJ1-4*01 HLA-A*02:01 B2M MHCI GLCTLVAML BLMF1 EBV PMID:34811538 tetramer-sort yes amplicon-seq effector memory T cells T1D T1D_2 chip0420_623168 PBMC +2449 SAVGDtt?GIGLRF TRAV8-4*01 TRAJ43*01 CSVGSRGTNEKLFF TRBV29-1*01 TRBJ1-4*01 HLA-A*02:01 B2M MHCI GLCTLVAML BLMF1 EBV PMID:34811538 tetramer-sort yes amplicon-seq effector memory T cells T1D T1D_1 chip0420_601886 PBMC +2450 CASSQSPGGTQYL TRBV14*01 TRBJ2-3*01 HLA-A*02:01 B2M MHCI GLCTLVAML BLMF1 EBV PMID:34811538 tetramer-sort yes amplicon-seq effector T cells T1D T1D_1 chip0420_346721 PBMC +2452 CASSINGGRRDGYTF TRBV19*01 TRBJ1-2*01 HLA-A*02:01 B2M MHCI GILGFVFTL M1 InfluenzaA PMID:34811538 tetramer-sort yes amplicon-seq transitional T cells between effector and memory populations T1D T1D_1 chip0420_446637 PBMC +2453 CAVDPWGNQFYF TRAV39*01 TRAJ49*01 CATQQGRDSQPQHF TRBV28*01 TRBJ1-5*01 HLA-A*02:01 B2M MHCI GLCTLVAML BLMF1 EBV PMID:34811538 tetramer-sort yes amplicon-seq effector memory T cells T1D T1D_1 chip0420_750484 PBMC +2455 CASSQSPGGTQYF TRBV14*01 TRBJ2-3*01 HLA-A*02:01 B2M MHCI GLCTLVAML BLMF1 EBV PMID:34811538 tetramer-sort yes amplicon-seq effector memory T cells T1D T1D_1 chip0420_174809 PBMC +2456 CASSIRSSDTQYF TRBV19*01 TRBJ2-3*01 HLA-A*02:01 B2M MHCI GILGFVFTL M1 InfluenzaA PMID:34811538 tetramer-sort yes amplicon-seq transitional T cells between effector and memory populations T1D T1D_1 chip0420_771666 PBMC +2458 CASSPDQTSSYNEQFF TRBV27*01 TRBJ2-1*01 HLA-A*02:01 B2M MHCI YVLDHLIVV BRLF1 EBV PMID:34811538 tetramer-sort yes amplicon-seq effector T cells T1D T1D_1 chip0420_749927 PBMC +2459 CASSQGTGTGEQYF TRBV3-1*01 TRBJ2-7*01 HLA-A*02:01 B2M MHCI LLAGIGTVPI PGT HomoSapiens PMID:34811538 tetramer-sort yes amplicon-seq Naive T cells T1D T1D_1 chip0420_470213 PBMC +2460 CASSALLg?gGAYGYTF TRBV27*01 TRBJ1-2*01 HLA-A*02:01 B2M MHCI YVLDHLIVV BRLF1 EBV PMID:34811538 tetramer-sort yes amplicon-seq effector memory T cells T1D T1D_2 chip0420_432005 PBMC +2461 CASSEAGQLGGQPQHF TRBV6-1*01 TRBJ1-5*01 HLA-A*02:01 B2M MHCI LLAGIGTVPI PGT HomoSapiens PMID:34811538 tetramer-sort yes amplicon-seq Naive T cells T1D T1D_2 chip0420_449277 PBMC +2462 CAVKDTDKLIF TRAV8-1*01 TRAJ34*01 CSAADQTYNEQFF TRBV20-1*01 TRBJ2-1*01 HLA-A*02:01 B2M MHCI YVLDHLIVV BRLF1 EBV PMID:34811538 tetramer-sort yes amplicon-seq effector memory T cells T1D T1D_1 chip0420_401533 PBMC +2463 CARSLPGLNYGYTF TRBV19*01 TRBJ1-2*01 HLA-A*02:01 B2M MHCI YVLDHLIVV BRLF1 EBV PMID:34811538 tetramer-sort yes amplicon-seq effector memory T cells T1D T1D_2 chip0420_20798 PBMC +2465 CSVGSRGTNEKLFF TRBV29-1*01 TRBJ1-4*01 HLA-A*02:01 B2M MHCI GLCTLVAML BLMF1 EBV PMID:34811538 tetramer-sort yes amplicon-seq effector T cells T1D T1D_1 chip0420_373071 PBMC +2467 CATLNSWSGYNEQFF TRBV12-3*01,TRBV12-4*01 TRBJ2-1*01 HLA-A*02:01 B2M MHCI IQATVMIIV ZNT8 HomoSapiens PMID:34811538 tetramer-sort yes amplicon-seq Naive T cells T1D T1D_2 chip0420_668647 PBMC +2468 CIVRGPQRa?tNAGHLLIF TRAV26-1*01 TRAJ39*01 HLA-A*02:01 B2M MHCI LLQEYNWEL GAD65 HomoSapiens PMID:34811538 tetramer-sort yes amplicon-seq Naive T cells T1D T1D_2 chip0420_644201 PBMC +2469 CSVGSRGTNEKLFF TRBV29-1*01 TRBJ1-4*01 HLA-A*02:01 B2M MHCI GLCTLVAML BLMF1 EBV PMID:34811538 tetramer-sort yes amplicon-seq effector memory T cells T1D T1D_1 chip0420_69029 PBMC +2470 CASSSFRGSEAFF TRBV19*01 TRBJ1-1*01 HLA-A*02:01 B2M MHCI GILGFVFTL M1 InfluenzaA PMID:34811538 tetramer-sort yes amplicon-seq Naive T cells T1D T1D_1 chip0420_572492 PBMC +2471 CASSVGGEAYEQYF TRBV9*01 TRBJ2-7*01 HLA-A*02:01 B2M MHCI GLCTLVAML BLMF1 EBV PMID:34811538 tetramer-sort yes amplicon-seq effector memory T cells T1D T1D_1 chip0420_97624 PBMC +2472 CSVGSRGTNEKLFF TRBV29-1*01 TRBJ1-4*01 HLA-A*02:01 B2M MHCI GLCTLVAML BLMF1 EBV PMID:34811538 tetramer-sort yes amplicon-seq effector T cells T1D T1D_1 chip0420_853990 PBMC +2473 CASRQPEHEAFF TRBV5-6*01 TRBJ1-1*01 HLA-A*02:01 B2M MHCI LLAGIGTVPI PGT HomoSapiens PMID:34811538 tetramer-sort yes amplicon-seq Naive T cells T1D T1D_1 chip0420_799817 PBMC +2474 LCP*SQgg??ccGETQYF TRBV19*01 TRBJ2-5*01 HLA-A*02:01 B2M MHCI GILGFVFTL M1 InfluenzaA PMID:34811538 tetramer-sort yes amplicon-seq transitional T cells between effector and memory populations T1D T1D_1 chip0420_790463 PBMC +2475 CASSQDPRDSPRDTQYF TRBV4-2*01 TRBJ2-3*01 HLA-A*02:01 B2M MHCI VVTGVLVYL ZNT8 HomoSapiens PMID:34811538 tetramer-sort yes amplicon-seq Naive T cells T1D T1D_1 chip0420_426360 PBMC +2476 CACSFSGGRRDGYTF TRBV19*01 TRBJ1-2*01 HLA-A*02:01 B2M MHCI GILGFVFTL M1 InfluenzaA PMID:34811538 tetramer-sort yes amplicon-seq transitional T cells between effector and memory populations T1D T1D_1 chip0420_267022 PBMC +2477 CAAYAGNMLPF TRAV29/DV5*01 TRAJ39*01 CSVGSRGTNEKLFF TRBV29-1*01 TRBJ1-4*01 HLA-A*02:01 B2M MHCI GLCTLVAML BLMF1 EBV PMID:34811538 tetramer-sort yes amplicon-seq effector memory T cells T1D T1D_1 chip0420_630756 PBMC +2478 CVVNGRDSSYKLIF TRAV12-1*01 TRAJ12*01 CASSSGLVAPGELFF TRBV2*01 TRBJ2-2*01 HLA-A*02:01 B2M MHCI GLCTLVAML BLMF1 EBV PMID:34811538 tetramer-sort yes amplicon-seq effector memory T cells T1D T1D_2 chip0420_103232 PBMC +2479 CAYTLTQGGSEKLVF TRAV38-2/DV8*01 TRAJ57*01 CASSLGGASTDTQYF TRBV13*01 TRBJ2-3*01 HLA-A*02:01 B2M MHCI ALGIGILTV MART1 HomoSapiens PMID:34811538 tetramer-sort yes amplicon-seq Naive T cells healthy healthy_2 chip0420_624819 PBMC +2480 CASSLFSSEQFF TRBV28*01 TRBJ2-1*01 HLA-A*02:01 B2M MHCI YVLDHLIVV BRLF1 EBV PMID:34811538 tetramer-sort yes amplicon-seq effector memory T cells T1D T1D_1 chip0420_388767 PBMC +2482 CASSYGLAGINEQFF TRBV6-2*01,TRBV6-3*01 TRBJ2-1*01 HLA-A*02:01 B2M MHCI YVLDHLIVV BRLF1 EBV PMID:34811538 tetramer-sort yes amplicon-seq effector memory T cells T1D T1D_1 chip0420_216167 PBMC +2484 CATQQGRDSQPQHF TRBV28*01 TRBJ1-5*01 HLA-A*02:01 B2M MHCI GLCTLVAML BLMF1 EBV PMID:34811538 tetramer-sort yes amplicon-seq effector T cells T1D T1D_1 chip0420_133446 PBMC +2485 CAVTDTDKLIF TRAV8-1*01 TRAJ34*01 CASSALLGGAYGYTF TRBV27*01 TRBJ1-2*01 HLA-A*02:01 B2M MHCI YVLDHLIVV BRLF1 EBV PMID:34811538 tetramer-sort yes amplicon-seq effector memory T cells T1D T1D_2 chip0420_40906 PBMC +2486 CSARDGTGNGYTF TRBV20-1*01 TRBJ1-2*01 HLA-A*02:01 B2M MHCI GLCTLVAML BLMF1 EBV PMID:34811538 tetramer-sort yes amplicon-seq effector memory T cells T1D T1D_1 chip0420_706050 PBMC +2487 CASSSDGMNTEAFF TRBV10-2*01 TRBJ1-1*01 HLA-A*02:01 B2M MHCI CLGGLLTMV LMP2A EBV PMID:34811538 tetramer-sort yes amplicon-seq effector memory T cells T1D T1D_2 chip0420_639344 PBMC +2489 CASSTGYYGYTF TRBV19*01 TRBJ1-2*01 HLA-A*02:01 B2M MHCI GILGFVFTL M1 InfluenzaA PMID:34811538 tetramer-sort yes amplicon-seq transitional T cells between effector and memory populations T1D T1D_1 chip0420_518214 PBMC +2490 CAVRDVGSGTYKYIF TRAV3*01 TRAJ40*01 CASSHALENTGELFF TRBV3-1*01 TRBJ2-2*01 HLA-A*02:01 B2M MHCI YVLDHLIVV BRLF1 EBV PMID:34811538 tetramer-sort yes amplicon-seq effector memory T cells T1D T1D_2 chip0420_474013 PBMC +2491 CVVNGRDSSYKLIF TRAV12-1*01 TRAJ12*01 CASSSGLVAPGELFF TRBV2*01 TRBJ2-2*01 HLA-A*02:01 B2M MHCI GLCTLVAML BLMF1 EBV PMID:34811538 tetramer-sort yes amplicon-seq effector T cells T1D T1D_2 chip0420_75138 PBMC +2493 CASSPDQTSSYNEQFF TRBV27*01 TRBJ2-1*01 HLA-A*02:01 B2M MHCI YVLDHLIVV BRLF1 EBV PMID:34811538 tetramer-sort yes amplicon-seq effector T cells T1D T1D_1 chip0420_665173 PBMC +2494 CVVNGRDSRYKLIF TRAV12-1*01 TRAJ12*01 CASSSGLVAPGELFF TRBV2*01 TRBJ2-2*01 HLA-A*02:01 B2M MHCI GLCTLVAML BLMF1 EBV PMID:34811538 tetramer-sort yes amplicon-seq effector memory T cells T1D T1D_2 chip0420_871042 PBMC +2495 CASRMGAGDTQYF TRBV10-2*01 TRBJ2-3*01 HLA-A*02:01 B2M MHCI GLCTLVAML BLMF1 EBV PMID:34811538 tetramer-sort yes amplicon-seq effector memory T cells T1D T1D_2 chip0420_143973 PBMC +2496 CASSPVSGSTYEQYF TRBV3-1*01 TRBJ2-7*01 HLA-A*02:01 B2M MHCI GLCTLVAML BLMF1 EBV PMID:34811538 tetramer-sort yes amplicon-seq effector T cells T1D T1D_1 chip0420_132893 PBMC +2497 CASSEAFLADNEQFF TRBV6-4*01 TRBJ2-1*01 HLA-A*02:01 B2M MHCI YVLDHLIVV BRLF1 EBV PMID:34811538 tetramer-sort yes amplicon-seq effector T cells T1D T1D_1 chip0420_55026 PBMC +2498 CASSLESGLLHNEQFF TRBV11-3*01 TRBJ2-1*01 HLA-A*02:01 B2M MHCI GLCTLVAML BLMF1 EBV PMID:34811538 tetramer-sort yes amplicon-seq effector memory T cells T1D T1D_2 chip0420_399071 PBMC +2499 CSVGTGGTNEKLFF TRBV29-1*01 TRBJ1-4*01 HLA-A*02:01 B2M MHCI GLCTLVAML BLMF1 EBV PMID:34811538 tetramer-sort yes amplicon-seq effector memory T cells T1D T1D_2 chip0420_273704 PBMC +2500 CAMREGVVEYGNKLVF TRAV14/DV4*01 TRAJ47*01 CAICLga?AGELFF TRBV19*01 TRBJ2-2*01 HLA-A*02:01 B2M MHCI GILGFVFTL M1 InfluenzaA PMID:34811538 tetramer-sort yes amplicon-seq effector T cells T1D T1D_1 chip0420_196823 PBMC +2501 CSADPYQDHYGYTF TRBV20-1*01 TRBJ1-2*01 HLA-A*01:01 B2M MHCI CTELKLSDY NP InfluenzaA PMID:34811538 tetramer-sort yes amplicon-seq transitional T cells between effector and memory populations T1D T1D_3 chip0420_509054 PBMC +2502 CASSTGQLSNTGELFF TRBV9*01 TRBJ2-2*01 HLA-A*02:01 B2M MHCI GLCTLVAML BLMF1 EBV PMID:34811538 tetramer-sort yes amplicon-seq effector memory T cells T1D T1D_1 chip0420_500895 PBMC +2503 CVVNGKDSSYKLIF TRAV12-1*01 TRAJ12*01 CASSGGAVAPSEQFF TRBV2*01 TRBJ2-1*01 HLA-A*02:01 B2M MHCI GLCTLVAML BLMF1 EBV PMID:34811538 tetramer-sort yes amplicon-seq effector T cells T1D T1D_2 chip0420_525666 PBMC +2504 CGPAEPNDYKLSF TRAV30*01 TRAJ20*01 CASSTGQLSNTGELFF TRBV9*01 TRBJ2-2*01 HLA-A*02:01 B2M MHCI GLCTLVAML BLMF1 EBV PMID:34811538 tetramer-sort yes amplicon-seq effector memory T cells T1D T1D_1 chip0420_840156 PBMC +2505 CGPAEPNDYKLSF TRAV30*01 TRAJ20*01 CASSTGQLSNTGELFF TRBV9*01 TRBJ2-2*01 HLA-A*02:01 B2M MHCI GLCTLVAML BLMF1 EBV PMID:34811538 tetramer-sort yes amplicon-seq effector T cells T1D T1D_1 chip0420_359081 PBMC +2507 CSVGSRGTNEKLFF TRBV29-1*01 TRBJ1-4*01 HLA-A*02:01 B2M MHCI GLCTLVAML BLMF1 EBV PMID:34811538 tetramer-sort yes amplicon-seq effector T cells T1D T1D_1 chip0420_403678 PBMC +2508 CALPSGGYNKLIF TRAV16*01 TRAJ4*01 HLA-A*02:01 B2M MHCI FLYALALLL LMP2 EBV PMID:34811538 tetramer-sort yes amplicon-seq transitional T cells between effector and memory populations T1D T1D_1 chip0420_304098 PBMC +2509 CALYNTAKLIF TRAV9-2*01 TRAJ34*01 HLA-A*02:01 B2M MHCI GLCTLVAML BLMF1 EBV PMID:34811538 tetramer-sort yes amplicon-seq effector memory T cells T1D T1D_1 chip0420_655829 PBMC +2511 CASSPIGIGTLPF TRBV18*01 TRBJ1-3*01 HLA-A*02:01 B2M MHCI GILGFVFTL M1 InfluenzaA PMID:34811538 tetramer-sort yes amplicon-seq transitional T cells between effector and memory populations T1D T1D_1 chip0420_840687 PBMC +2513 CASSPVSGSTYEQYF TRBV3-1*01 TRBJ2-7*01 HLA-A*02:01 B2M MHCI GLCTLVAML BLMF1 EBV PMID:34811538 tetramer-sort yes amplicon-seq effector memory T cells T1D T1D_1 chip0420_110101 PBMC +2514 CATSEKIQGSETYEQYF TRBV24-1*01 TRBJ2-7*01 HLA-A*02:01 B2M MHCI LLAGIGTVPI PGT HomoSapiens PMID:34811538 tetramer-sort yes amplicon-seq Naive T cells T1D T1D_1 chip0420_53665 PBMC +2515 CSVGTGGTNEKLFF TRBV29-1*01 TRBJ1-4*01 HLA-A*02:01 B2M MHCI GLCTLVAML BLMF1 EBV PMID:34811538 tetramer-sort yes amplicon-seq effector memory T cells T1D T1D_2 chip0420_609810 PBMC +2517 CASSQSRGSLWDTQYF TRBV4-3*01 TRBJ2-3*01 HLA-A*02:01 B2M MHCI YVLDHLIVV BRLF1 EBV PMID:34811538 tetramer-sort yes amplicon-seq effector T cells T1D T1D_2 chip0420_819956 PBMC +2518 CSVGTGGTNEKLFF TRBV29-1*01 TRBJ1-4*01 HLA-A*02:01 B2M MHCI GLCTLVAML BLMF1 EBV PMID:34811538 tetramer-sort yes amplicon-seq effector T cells T1D T1D_2 chip0420_799071 PBMC +2520 CIVGGTSSGKLTF TRAV26-1*01 TRAJ52*01 HLA-A*02:01 B2M MHCI SLVALGINAV POL HCV PMID:34811538 tetramer-sort yes amplicon-seq natural killer-like T cells T1D T1D_1 chip0420_806031 PBMC +2521 CVLKDTHQLIF TRAV8-1*01 TRAJ34*01 CASSDLANTGELFF TRBV27*01 TRBJ2-2*01 HLA-A*02:01 B2M MHCI YVLDHLIVV BRLF1 EBV PMID:34811538 tetramer-sort yes amplicon-seq effector memory T cells T1D T1D_2 chip0420_634970 PBMC +2523 CSVGSRGTNEKLFF TRBV29-1*01 TRBJ1-4*01 HLA-A*02:01 B2M MHCI GLCTLVAML BLMF1 EBV PMID:34811538 tetramer-sort yes amplicon-seq effector memory T cells T1D T1D_1 chip0420_771242 PBMC +2525 CSVGTGGTNEKLFF TRBV29-1*01 TRBJ1-4*01 HLA-A*02:01 B2M MHCI GLCTLVAML BLMF1 EBV PMID:34811538 tetramer-sort yes amplicon-seq effector memory T cells T1D T1D_2 chip0420_678661 PBMC +2526 CSVGTGGTNEKLFF TRBV29-1*01 TRBJ1-4*01 HLA-A*02:01 B2M MHCI GLCTLVAML BLMF1 EBV PMID:34811538 tetramer-sort yes amplicon-seq effector T cells T1D T1D_2 chip0420_637120 PBMC +2527 CVSDSNTGELFF TRBV7-9*01 TRBJ2-2*01 HLA-A*02:01 B2M MHCI VVTGVLVYL ZNT8 HomoSapiens PMID:34811538 tetramer-sort yes amplicon-seq Naive T cells T1D T1D_1 chip0420_443508 PBMC +2528 CAVKDTDKLIF TRAV8-1*01 TRAJ34*01 CAWSVQLAGVDEQYF TRBV30*01 TRBJ2-7*01 HLA-A*02:01 B2M MHCI YVLDHLIVV BRLF1 EBV PMID:34811538 tetramer-sort yes amplicon-seq effector memory T cells T1D T1D_2 chip0420_302138 PBMC +2529 CGTAEPNDYKLSF TRAV30*01 TRAJ20*01 HLA-A*02:01 B2M MHCI GLCTLVAML BLMF1 EBV PMID:34811538 tetramer-sort yes amplicon-seq effector T cells T1D T1D_1 chip0420_631141 PBMC +2530 CAVDENPLNYGGSQGNLIS TRAV39*01 TRAJ42*01 CASSRTSTDTQYF TRBV19*01 TRBJ2-3*01 HLA-A*02:01 B2M MHCI GILGFVFTL M1 InfluenzaA PMID:34811538 tetramer-sort yes amplicon-seq transitional T cells between effector and memory populations T1D T1D_1 chip0420_860579 PBMC +2531 CALGGLTF TRAV8-1*01 TRAJ22*01 HLA-A*02:01 B2M MHCI YVLDHLIVV BRLF1 EBV PMID:34811538 tetramer-sort yes amplicon-seq effector T cells T1D T1D_2 chip0420_581014 PBMC +2532 CAVNDGGYQKSYL TRAV12-2*01 TRAJ13*01 CASSSTAYNEQFF TRBV2*01 TRBJ2-1*01 HLA-A*02:01 B2M MHCI FLWSVFMLI IGRP HomoSapiens PMID:34811538 tetramer-sort yes amplicon-seq Naive T cells T1D T1D_1 chip0420_808469 PBMC +2533 CSVGTGGTNEKLFF TRBV29-1*01 TRBJ1-4*01 HLA-A*02:01 B2M MHCI GLCTLVAML BLMF1 EBV PMID:34811538 tetramer-sort yes amplicon-seq effector T cells T1D T1D_2 chip0420_799926 PBMC +2534 CASRMGAGDTQYF TRBV10-2*01 TRBJ2-3*01 HLA-A*02:01 B2M MHCI GLCTLVAML BLMF1 EBV PMID:34811538 tetramer-sort yes amplicon-seq transitional T cells between effector and memory populations T1D T1D_2 chip0420_209033 PBMC +2536 CSVGTGGTNEKLFF TRBV29-1*01 TRBJ1-4*01 HLA-A*02:01 B2M MHCI GLCTLVAML BLMF1 EBV PMID:34811538 tetramer-sort yes amplicon-seq effector T cells T1D T1D_2 chip0420_601147 PBMC +2537 CASSLGQGAVYEQYF TRBV11-2*01 TRBJ2-7*01 HLA-A*02:01 B2M MHCI LLAGIGTVPI PGT HomoSapiens PMID:34811538 tetramer-sort yes amplicon-seq effector memory T cells T1D T1D_2 chip0420_54420 PBMC +2538 CASSSGLVAPGELFF TRBV2*01 TRBJ2-2*01 HLA-A*02:01 B2M MHCI GLCTLVAML BLMF1 EBV PMID:34811538 tetramer-sort yes amplicon-seq effector memory T cells T1D T1D_2 chip0420_20537 PBMC +2541 CASSLGAGVSTDTQYF TRBV7-3*01 TRBJ2-3*01 HLA-A*02:01 B2M MHCI YVLDHLIVV BRLF1 EBV PMID:34811538 tetramer-sort yes amplicon-seq Naive T cells T1D T1D_1 chip0420_105917 PBMC +2543 CAEGTGFCKATAL TRAV12-2*01 TRAJ22*01 HLA-A*02:01 B2M MHCI RGPGRAFVTI GP160 HIV-1 PMID:34811538 tetramer-sort yes amplicon-seq Naive T cells T1D T1D_2 chip0420_308162 PBMC +2544 CVVNGRDSSYKLIF TRAV12-1*01 TRAJ12*01 CASSSGLVAPGELFF TRBV2*01 TRBJ2-2*01 HLA-A*02:01 B2M MHCI GLCTLVAML BLMF1 EBV PMID:34811538 tetramer-sort yes amplicon-seq effector memory T cells T1D T1D_2 chip0420_282109 PBMC +2545 CSVGSRGTNEKLFF TRBV29-1*01 TRBJ1-4*01 HLA-A*02:01 B2M MHCI GLCTLVAML BLMF1 EBV PMID:34811538 tetramer-sort yes amplicon-seq effector memory T cells T1D T1D_1 chip0420_811279 PBMC +2546 CAANYGGSQGNLIF TRAV25*01 TRAJ42*01 CASSFLGPGLNEQYF TRBV28*01 TRBJ2-7*01 HLA-A*02:01 B2M MHCI GILGFVFTL M1 InfluenzaA PMID:34811538 tetramer-sort yes amplicon-seq transitional T cells between effector and memory populations T1D T1D_1 chip0420_636215 PBMC +2547 CSVGTGGTNEKLFF TRBV29-1*01 TRBJ1-4*01 HLA-A*02:01 B2M MHCI GLCTLVAML BLMF1 EBV PMID:34811538 tetramer-sort yes amplicon-seq effector memory T cells T1D T1D_2 chip0420_657637 PBMC +2548 CASSINGGRRDGYTF TRBV19*01 TRBJ1-2*01 HLA-A*02:01 B2M MHCI GILGFVFTL M1 InfluenzaA PMID:34811538 tetramer-sort yes amplicon-seq transitional T cells between effector and memory populations T1D T1D_1 chip0420_348470 PBMC +2549 CASSDTDYNEQFF TRBV12-3*01,TRBV12-4*01 TRBJ2-1*01 HLA-A*02:01 B2M MHCI LLFNILGGWV NS4B HCV PMID:34811538 tetramer-sort yes amplicon-seq Naive T cells T1D T1D_2 chip0420_637092 PBMC +2550 CASLPPGASPVGF TRAV8-6*01 TRAJ3*01 CASSSGLVAPGELFF TRBV2*01 TRBJ2-2*01 HLA-A*02:01 B2M MHCI GLCTLVAML BLMF1 EBV PMID:34811538 tetramer-sort yes amplicon-seq effector memory T cells T1D T1D_2 chip0420_344609 PBMC +2552 CASSRTGLNTEAFF TRBV18*01 TRBJ1-1*01 HLA-A*02:01 B2M MHCI GILGFVFTL M1 InfluenzaA PMID:34811538 tetramer-sort yes amplicon-seq transitional T cells between effector and memory populations T1D T1D_1 chip0420_167768 PBMC +2553 CAMSGSNFGNEKLTF TRAV12-3*01 TRAJ48*01 CASSPPQTSQETQYF TRBV18*01 TRBJ2-5*01 HLA-A*02:01 B2M MHCI LLAGIGTVPI PGT HomoSapiens PMID:34811538 tetramer-sort yes amplicon-seq Naive T cells T1D T1D_1 chip0420_848605 PBMC +2555 CALYNTDKLIF TRAV9-2*01 TRAJ34*01 HLA-A*02:01 B2M MHCI GLCTLVAML BLMF1 EBV PMID:34811538 tetramer-sort yes amplicon-seq effector memory T cells T1D T1D_1 chip0420_367049 PBMC +2556 CASSQSPGGTQYF TRBV14*01 TRBJ2-3*01 HLA-A*02:01 B2M MHCI GLCTLVAML BLMF1 EBV PMID:34811538 tetramer-sort yes amplicon-seq effector memory T cells T1D T1D_1 chip0420_752994 PBMC +2559 CVVRGSLg?cHTGKLIF TRAV8-2*01 TRAJ37*01 HLA-A*02:01 B2M MHCI GILGFVFTL M1 InfluenzaA PMID:34811538 tetramer-sort yes amplicon-seq transitional T cells between effector and memory populations T1D T1D_1 chip0420_536701 PBMC +2560 CVVNGEDSSYKLIF TRAV12-1*01 TRAJ12*01 CASSPHLGAAAAQYF TRBV19*01 TRBJ2-7*01 HLA-A*02:01 B2M MHCI YVLDHLIVV BRLF1 EBV PMID:34811538 tetramer-sort yes amplicon-seq effector memory T cells T1D T1D_1 chip0420_453633 PBMC +2562 CATEGDSGYSTLTF TRAV17*01 TRAJ11*01 HLA-A*02:01 B2M MHCI FLYALALLL LMP2 EBV PMID:34811538 tetramer-sort yes amplicon-seq central memory T cells T1D T1D_1 chip0420_192923 PBMC +2564 CSVGTGGTNEKLFF TRBV29-1*01 TRBJ1-4*01 HLA-A*02:01 B2M MHCI GLCTLVAML BLMF1 EBV PMID:34811538 tetramer-sort yes amplicon-seq effector memory T cells T1D T1D_2 chip0420_550996 PBMC +2565 CASNEDGMNTEAFF TRBV10-2*01 TRBJ1-1*01 HLA-A*02:01 B2M MHCI CLGGLLTMV LMP2A EBV PMID:34811538 tetramer-sort yes amplicon-seq effector memory T cells T1D T1D_2 chip0420_407313 PBMC +2566 CASSSGGNVDTQYF TRBV7-3*01 TRBJ2-3*01 HLA-A*02:01 B2M MHCI GLCTLVAML BLMF1 EBV PMID:34811538 tetramer-sort yes amplicon-seq effector memory T cells T1D T1D_1 chip0420_135991 PBMC +2567 CASSPSTANEQFF TRBV14*01 TRBJ2-1*01 HLA-A*02:01 B2M MHCI LLAGIGTVPI PGT HomoSapiens PMID:34811538 tetramer-sort yes amplicon-seq Naive T cells T1D T1D_1 chip0420_10674 PBMC +2568 CAVSDRDGGFKTIF TRAV8-4*01 TRAJ9*01 HLA-A*02:01 B2M MHCI GILGFVFTL M1 InfluenzaA PMID:34811538 tetramer-sort yes amplicon-seq transitional T cells between effector and memory populations T1D T1D_1 chip0420_545889 PBMC +2569 CASSINGGRRDGYTF TRBV19*01 TRBJ1-2*01 HLA-A*02:01 B2M MHCI GILGFVFTL M1 InfluenzaA PMID:34811538 tetramer-sort yes amplicon-seq transitional T cells between effector and memory populations T1D T1D_1 chip0420_394184 PBMC +2570 CASSVRAGETQYF TRBV19*01 TRBJ2-5*01 HLA-A*02:01 B2M MHCI GILGFVFTL M1 InfluenzaA PMID:34811538 tetramer-sort yes amplicon-seq transitional T cells between effector and memory populations T1D T1D_1 chip0420_784471 PBMC +2571 CASSSGQVLPNEQFF TRBV2*01 TRBJ2-1*01 HLA-A*02:01 B2M MHCI GLCTLVAML BLMF1 EBV PMID:34811538 tetramer-sort yes amplicon-seq effector T cells T1D T1D_1 chip0420_18365 PBMC +2573 CASSLTPLYGYTF TRBV12-3*01,TRBV12-4*01 TRBJ1-2*01 HLA-A*02:01 B2M MHCI FLWSVFWLI IGRP HomoSapiens PMID:34811538 tetramer-sort yes amplicon-seq Naive T cells T1D T1D_1 chip0420_781356 PBMC +2574 CAGLPESGYALNF TRAV27*01 TRAJ41*01 CSARAGLTTEAFF TRBV20-1*01 TRBJ1-1*01 HLA-A*02:01 B2M MHCI LLAGIGTVPI PGT HomoSapiens PMID:34811538 tetramer-sort yes amplicon-seq Naive T cells T1D T1D_1 chip0420_504346 PBMC +2576 CSVGTGGTNEKLFF TRBV29-1*01 TRBJ1-4*01 HLA-A*02:01 B2M MHCI GLCTLVAML BLMF1 EBV PMID:34811538 tetramer-sort yes amplicon-seq effector memory T cells T1D T1D_2 chip0420_778906 PBMC +2577 CASSSGLVAPGELFF TRBV2*01 TRBJ2-2*01 HLA-A*02:01 B2M MHCI GLCTLVAML BLMF1 EBV PMID:34811538 tetramer-sort yes amplicon-seq effector T cells T1D T1D_2 chip0420_282747 PBMC +2578 CSARDGTGNGYTF TRBV20-1*01 TRBJ1-2*01 HLA-A*02:01 B2M MHCI GLCTLVAML BLMF1 EBV PMID:34811538 tetramer-sort yes amplicon-seq effector memory T cells T1D T1D_1 chip0420_627524 PBMC +2579 CALHNTDKLIF TRAV9-2*01 TRAJ34*01 HLA-A*02:01 B2M MHCI LLAGIGTVPI PGT HomoSapiens PMID:34811538 tetramer-sort yes amplicon-seq Naive T cells T1D T1D_1 chip0420_464460 PBMC +2581 CASSPPGGEAFF TRBV7-9*01 TRBJ1-1*01 HLA-A*02:01 B2M MHCI RLLPLLALLAL INS HomoSapiens PMID:34811538 tetramer-sort yes amplicon-seq Naive T cells T1D T1D_1 chip0420_725879 PBMC +2583 CSVGTGGTNEKLFF TRBV29-1*01 TRBJ1-4*01 HLA-A*02:01 B2M MHCI GLCTLVAML BLMF1 EBV PMID:34811538 tetramer-sort yes amplicon-seq effector memory T cells T1D T1D_2 chip0420_25849 PBMC +2584 CASRAGAGDTQYF TRBV10-2*01 TRBJ2-3*01 HLA-A*02:01 B2M MHCI GLCTLVAML BLMF1 EBV PMID:34811538 tetramer-sort yes amplicon-seq effector memory T cells T1D T1D_2 chip0420_742012 PBMC +2585 CAESTSGGKLIF TRAV5*01 TRAJ23*01 CSVGTGGTNEKLFF TRBV29-1*01 TRBJ1-4*01 HLA-A*02:01 B2M MHCI GLCTLVAML BLMF1 EBV PMID:34811538 tetramer-sort yes amplicon-seq effector T cells T1D T1D_2 chip0420_99817 PBMC +2586 CASRGLTGGGSEAFF TRBV28*01 TRBJ1-1*01 HLA-A*02:01 B2M MHCI YVLDHLIVV BRLF1 EBV PMID:34811538 tetramer-sort yes amplicon-seq effector memory T cells T1D T1D_1 chip0420_23001 PBMC +2587 CGTQENDSWGQLQF TRAV30*01 TRAJ24*01 HLA-A*02:01 B2M MHCI YVLDHLIVV BRLF1 EBV PMID:34811538 tetramer-sort yes amplicon-seq effector memory T cells T1D T1D_2 chip0420_557944 PBMC +2588 CGTEEPNDYKLSF TRAV30*01 TRAJ20*01 CASSTGQLSNTGELFF TRBV9*01 TRBJ2-2*01 HLA-A*02:01 B2M MHCI GLCTLVAML BLMF1 EBV PMID:34811538 tetramer-sort yes amplicon-seq effector T cells T1D T1D_1 chip0420_68617 PBMC +2589 CAEGSQGNLIF TRAV5*01 TRAJ42*01 CSVGGSFYGYTF TRBV29-1*01 TRBJ1-2*01 HLA-A*02:01 B2M MHCI GLCTLVAML BLMF1 EBV PMID:34811538 tetramer-sort yes amplicon-seq effector memory T cells T1D T1D_2 chip0420_761331 PBMC +2590 CSVGSRGTNEKLFF TRBV29-1*01 TRBJ1-4*01 HLA-A*02:01 B2M MHCI GLCTLVAML BLMF1 EBV PMID:34811538 tetramer-sort yes amplicon-seq effector memory T cells T1D T1D_1 chip0420_127354 PBMC +2591 CAVMNNNAGNMLTF TRAV35*01 TRAJ39*01 HLA-A*02:01 B2M MHCI GLCTLVAML BLMF1 EBV PMID:34811538 tetramer-sort yes amplicon-seq effector memory T cells T1D T1D_1 chip0420_566769 PBMC +2592 WASSPVSGSTYEQYF TRBV3-1*01 TRBJ2-7*01 HLA-A*02:01 B2M MHCI GLCTLVAML BLMF1 EBV PMID:34811538 tetramer-sort yes amplicon-seq effector memory T cells T1D T1D_1 chip0420_132769 PBMC +2595 CASSRRTLNSGANVLTF TRBV13*01 TRBJ2-6*01 HLA-A*02:01 B2M MHCI YVLDHLIVV BRLF1 EBV PMID:34811538 tetramer-sort yes amplicon-seq transitional T cells between effector and memory populations T1D T1D_2 chip0420_873841 PBMC +2597 CASSIIDRTLGTDTQYF TRBV19*01 TRBJ2-3*01 HLA-A*02:01 B2M MHCI GILGFVFTL M1 InfluenzaA PMID:34811538 tetramer-sort yes amplicon-seq transitional T cells between effector and memory populations T1D T1D_1 chip0420_221080 PBMC +2598 CASSIGLPGYTF TRBV19*01 TRBJ1-2*01 HLA-A*02:01 B2M MHCI GILGFVFTL M1 InfluenzaA PMID:34811538 tetramer-sort yes amplicon-seq transitional T cells between effector and memory populations T1D T1D_1 chip0420_132505 PBMC +2599 CAVDPWGNQFYF TRAV39*01 TRAJ49*01 CATQQGRDSQPQHF TRBV28*01 TRBJ1-5*01 HLA-A*02:01 B2M MHCI GLCTLVAML BLMF1 EBV PMID:34811538 tetramer-sort yes amplicon-seq effector memory T cells T1D T1D_1 chip0420_403120 PBMC +2600 CASSLYSNQPQHL TRBV19*01 TRBJ1-5*01 HLA-A*02:01 B2M MHCI GILGFVFTL M1 InfluenzaA PMID:34811538 tetramer-sort yes amplicon-seq transitional T cells between effector and memory populations T1D T1D_1 chip0420_340445 PBMC +2602 CAVKGYDKIIF TRAV8-1*01 TRAJ30*01 HLA-A*02:01 B2M MHCI YVLDHLIVV BRLF1 EBV PMID:34811538 tetramer-sort yes amplicon-seq effector T cells T1D T1D_1 chip0420_156026 PBMC +2603 CSVDQRTGQKKNYGYTF TRBV29-1*01 TRBJ1-2*01 HLA-A*02:01 B2M MHCI GLCTLVAML BLMF1 EBV PMID:34811538 tetramer-sort yes amplicon-seq effector memory T cells T1D T1D_2 chip0420_745855 PBMC +2604 CAVKDTDKLIF TRAV8-1*01 TRAJ34*01 HLA-A*02:01 B2M MHCI YVLDHLIVV BRLF1 EBV PMID:34811538 tetramer-sort yes amplicon-seq effector T cells T1D T1D_1 chip0420_667275 PBMC +2606 CASSPDQTSSYNEQFF TRBV27*01 TRBJ2-1*01 HLA-A*02:01 B2M MHCI YVLDHLIVV BRLF1 EBV PMID:34811538 tetramer-sort yes amplicon-seq effector memory T cells T1D T1D_1 chip0420_332648 PBMC +2608 CSVGGSFYGYTF TRBV29-1*01 TRBJ1-2*01 HLA-A*02:01 B2M MHCI GLCTLVAML BLMF1 EBV PMID:34811538 tetramer-sort yes amplicon-seq effector memory T cells T1D T1D_2 chip0420_621031 PBMC +2609 CASSQSPGGTQYF TRBV14*01 TRBJ2-3*01 HLA-A*02:01 B2M MHCI GLCTLVAML BLMF1 EBV PMID:34811538 tetramer-sort yes amplicon-seq effector memory T cells T1D T1D_1 chip0420_126326 PBMC +2610 CAESTSGGTLIF TRAV5*01 TRAJ23*01 CSVGTGGTNEKLFF TRBV29-1*01 TRBJ1-4*01 HLA-A*02:01 B2M MHCI GLCTLVAML BLMF1 EBV PMID:34811538 tetramer-sort yes amplicon-seq effector memory T cells T1D T1D_2 chip0420_647317 PBMC +2611 CASSSGLVAPGELFF TRBV2*01 TRBJ2-2*01 HLA-A*02:01 B2M MHCI GLCTLVAML BLMF1 EBV PMID:34811538 tetramer-sort yes amplicon-seq effector memory T cells T1D T1D_2 chip0420_556117 PBMC +2612 CAAPSQGGSAKLVF TRAV29/DV5*01 TRAJ57*01 HLA-A*02:01 B2M MHCI GILGFVFTL M1 InfluenzaA PMID:34811538 tetramer-sort yes amplicon-seq transitional T cells between effector and memory populations T1D T1D_1 chip0420_304899 PBMC +2613 CASSSGLVAPGELFF TRBV2*01 TRBJ2-2*01 HLA-A*02:01 B2M MHCI GLCTLVAML BLMF1 EBV PMID:34811538 tetramer-sort yes amplicon-seq effector memory T cells T1D T1D_2 chip0420_695678 PBMC +2616 CASSYNEQFF TRBV2*01 TRBJ2-1*01 HLA-A*02:01 B2M MHCI GIIYIIYKL P3A CoxsackievirusB PMID:34811538 tetramer-sort yes amplicon-seq Naive T cells T1D T1D_1 chip0420_830424 PBMC +2618 CSSQEGGYGYTF TRBV29-1*01 TRBJ1-2*01 HLA-A*02:01 B2M MHCI GLCTLVAML BLMF1 EBV PMID:34811538 tetramer-sort yes amplicon-seq effector memory T cells T1D T1D_2 chip0420_774824 PBMC +2621 CASSFDSSQPRLF TRBV19*01 TRBJ1-5*01 HLA-A*02:01 B2M MHCI GILGFVFTL M1 InfluenzaA PMID:34811538 tetramer-sort yes amplicon-seq transitional T cells between effector and memory populations T1D T1D_1 chip0420_712637 PBMC +2622 CASSPGQLSNTGELLF TRBV9*01 TRBJ2-2*01 HLA-A*02:01 B2M MHCI GLCTLVAML BLMF1 EBV PMID:34811538 tetramer-sort yes amplicon-seq effector memory T cells T1D T1D_1 chip0420_142722 PBMC +2623 CALSEVTSGGSYIPTF TRAV19*01 TRAJ6*01 HLA-A*02:01 B2M MHCI MVWESGCTV PTPRN HomoSapiens PMID:34811538 tetramer-sort yes amplicon-seq Naive T cells T1D T1D_2 chip0420_17519 PBMC +2624 CASSHQASEQYF TRBV10-1*01 TRBJ2-7*01 HLA-A*02:01 B2M MHCI YVLDHLIVV BRLF1 EBV PMID:34811538 tetramer-sort yes amplicon-seq effector memory T cells T1D T1D_2 chip0420_558098 PBMC +2625 LCQQRLD*??cGSVESQYF TRBV3-1*01 TRBJ2-5*01 HLA-A*02:01 B2M MHCI YVLDHLIVV BRLF1 EBV PMID:34811538 tetramer-sort yes amplicon-seq effector memory T cells T1D T1D_2 chip0420_146057 PBMC +2627 CVVNGRDSSYKLIF TRAV12-1*01 TRAJ12*01 CASSDGRVHPGTQYF TRBV2*01 TRBJ2-5*01 HLA-A*02:01 B2M MHCI GLCTLVAML BLMF1 EBV PMID:34811538 tetramer-sort yes amplicon-seq effector memory T cells T1D T1D_1 chip0420_178623 PBMC +2628 CASSSGLVAPGELFF TRBV2*01 TRBJ2-2*01 HLA-A*02:01 B2M MHCI GLCTLVAML BLMF1 EBV PMID:34811538 tetramer-sort yes amplicon-seq effector memory T cells T1D T1D_2 chip0420_76278 PBMC +2630 CAGGVRGGLYGSPF TRBV6-1*01 TRBJ1-2*01 HLA-A*02:01 B2M MHCI FLYALALLL LMP2 EBV PMID:34811538 tetramer-sort yes amplicon-seq central memory T cells T1D T1D_1 chip0420_240555 PBMC +2631 CASSPSTSGSGETQYF TRBV3-1*01 TRBJ2-5*01 HLA-A*02:01 B2M MHCI YVLDHLIVV BRLF1 EBV PMID:34811538 tetramer-sort yes amplicon-seq effector memory T cells T1D T1D_2 chip0420_168939 PBMC +2632 CAVNSRGNQFYF TRAV12-2*01 TRAJ49*01 CASSLVTSVDTQYF TRBV11-3*01 TRBJ2-3*01 HLA-A*02:01 B2M MHCI LLAGIGTVPI PGT HomoSapiens PMID:34811538 tetramer-sort yes amplicon-seq Naive T cells T1D T1D_2 chip0420_687633 PBMC +2633 CASSSGLVAPRELFF TRBV2*01 TRBJ2-2*01 HLA-A*02:01 B2M MHCI GLCTLVAML BLMF1 EBV PMID:34811538 tetramer-sort yes amplicon-seq effector memory T cells T1D T1D_2 chip0420_604983 PBMC +2634 CAVRGSYIPTF TRAV12-2*01 TRAJ6*01 CASSPQGTSGTDTQYF TRBV3-1*01 TRBJ2-3*01 HLA-A*02:01 B2M MHCI LLAGIGTVPI PGT HomoSapiens PMID:34811538 tetramer-sort yes amplicon-seq Naive T cells T1D T1D_1 chip0420_224038 PBMC +2636 CASSSDGMNTEAFF TRBV10-2*01 TRBJ1-1*01 HLA-A*02:01 B2M MHCI CLGGLLTMV LMP2A EBV PMID:34811538 tetramer-sort yes amplicon-seq central memory T cells T1D T1D_2 chip0420_472176 PBMC +2638 CASSTGQLSNTGELFF TRBV9*01 TRBJ2-2*01 HLA-A*02:01 B2M MHCI GLCTLVAML BLMF1 EBV PMID:34811538 tetramer-sort yes amplicon-seq effector T cells T1D T1D_1 chip0420_446836 PBMC +2642 CALSEMDSSYKLIF TRAV19*01 TRAJ12*01 CSVGTGGTNEKLFF TRBV29-1*01 TRBJ1-4*01 HLA-A*02:01 B2M MHCI GLCTLVAML BLMF1 EBV PMID:34811538 tetramer-sort yes amplicon-seq effector memory T cells T1D T1D_2 chip0420_754995 PBMC +2643 CASSPTGTSGIGEQFF TRBV6-1*01 TRBJ2-1*01 HLA-A*02:01 B2M MHCI LLAGIGTVPI PGT HomoSapiens PMID:34811538 tetramer-sort yes amplicon-seq Naive T cells T1D T1D_1 chip0420_686892 PBMC +2644 CAVNSGYALNF TRAV3*01 TRAJ41*01 CSAIDTSGTGGYEQYF TRBV20-1*01 TRBJ2-7*01 HLA-A*02:01 B2M MHCI LLFNILGGWV NS4B HCV PMID:34811538 tetramer-sort yes amplicon-seq transitional T cells between effector and memory populations T1D T1D_1 chip0420_48308 PBMC +2645 CASSTGQLSNTGELFF TRBV9*01 TRBJ2-2*01 HLA-A*02:01 B2M MHCI GLCTLVAML BLMF1 EBV PMID:34811538 tetramer-sort yes amplicon-seq effector T cells T1D T1D_1 chip0420_194434 PBMC +2646 CASSSDGMNTEAFF TRBV10-2*01 TRBJ1-1*01 HLA-A*02:01 B2M MHCI CLGGLLTMV LMP2A EBV PMID:34811538 tetramer-sort yes amplicon-seq effector memory T cells T1D T1D_2 chip0420_177790 PBMC +2647 CASSGDGLSTEAFF TRBV10-2*01 TRBJ1-1*01 HLA-A*02:01 B2M MHCI CLGGLLTMV LMP2A EBV PMID:34811538 tetramer-sort yes amplicon-seq effector memory T cells T1D T1D_2 chip0420_444073 PBMC +2648 CASSYAGGAYGYTF TRBV6-5*01 TRBJ1-2*01 HLA-A*02:01 B2M MHCI FLYALALLL LMP2 EBV PMID:34811538 tetramer-sort yes amplicon-seq central memory T cells T1D T1D_1 chip0420_760903 PBMC +2649 CAVNALDKLIF TRAV8-1*01 TRAJ34*01 HLA-A*02:01 B2M MHCI YVLDHLIVV BRLF1 EBV PMID:34811538 tetramer-sort yes amplicon-seq effector memory T cells T1D T1D_1 chip0420_840338 PBMC +2650 CASRLQGTEAFF TRBV12-3*01,TRBV12-4*01 TRBJ1-1*01 HLA-A*02:01 B2M MHCI LLAGIGTVPI PGT HomoSapiens PMID:34811538 tetramer-sort yes amplicon-seq transitional T cells between effector and memory populations T1D T1D_2 chip0420_337448 PBMC +2651 CSVGTGGTNEKLFF TRBV29-1*01 TRBJ1-4*01 HLA-A*02:01 B2M MHCI GLCTLVAML BLMF1 EBV PMID:34811538 tetramer-sort yes amplicon-seq effector memory T cells T1D T1D_2 chip0420_344185 PBMC +2653 CASSVRAGETQYF TRBV19*01 TRBJ2-5*01 HLA-A*02:01 B2M MHCI GILGFVFTL M1 InfluenzaA PMID:34811538 tetramer-sort yes amplicon-seq transitional T cells between effector and memory populations T1D T1D_1 chip0420_97630 PBMC +2654 CSVGTGGTNEKLFF TRBV29-1*01 TRBJ1-4*01 HLA-A*02:01 B2M MHCI GLCTLVAML BLMF1 EBV PMID:34811538 tetramer-sort yes amplicon-seq effector memory T cells T1D T1D_1 chip0420_102472 PBMC +2655 CASSRQGGKDGYTF TRBV6-1*01 TRBJ1-2*01 HLA-A*02:01 B2M MHCI FLYALALLL LMP2 EBV PMID:34811538 tetramer-sort yes amplicon-seq central memory T cells T1D T1D_2 chip0420_74053 PBMC +2656 CAVKDTDKLIF TRAV8-1*01 TRAJ34*01 CASSPHLGAAAEQYF TRBV19*01 TRBJ2-7*01 HLA-A*02:01 B2M MHCI YVLDHLIVV BRLF1 EBV PMID:34811538 tetramer-sort yes amplicon-seq effector T cells T1D T1D_1 chip0420_565537 PBMC +2657 CALYNTDKLIF TRAV9-2*01 TRAJ34*01 HLA-A*02:01 B2M MHCI GLCTLVAML BLMF1 EBV PMID:34811538 tetramer-sort yes amplicon-seq effector T cells T1D T1D_1 chip0420_485883 PBMC +2658 CARRALLGSNQPQHF TRBV19*01 TRBJ1-5*01 HLA-A*02:01 B2M MHCI YVLDHLIVV BRLF1 EBV PMID:34811538 tetramer-sort yes amplicon-seq effector memory T cells T1D T1D_1 chip0420_410832 PBMC +2659 CSVGTGGTNEKLFF TRBV29-1*01 TRBJ1-4*01 HLA-A*02:01 B2M MHCI GLCTLVAML BLMF1 EBV PMID:34811538 tetramer-sort yes amplicon-seq effector memory T cells T1D T1D_2 chip0420_64192 PBMC +2660 CATDGGGGSQGNLIF TRAV17*01 TRAJ42*01 CATSAVGVPTEAFF TRBV24-1*01 TRBJ1-1*01 HLA-A*02:01 B2M MHCI GILGFVFTL M1 InfluenzaA PMID:34811538 tetramer-sort yes amplicon-seq transitional T cells between effector and memory populations T1D T1D_1 chip0420_795585 PBMC +2661 CVVNGRDSSYKLIF TRAV12-1*01 TRAJ12*01 CASSSGLVAPGELFF TRBV2*01 TRBJ2-2*01 HLA-A*02:01 B2M MHCI GLCTLVAML BLMF1 EBV PMID:34811538 tetramer-sort yes amplicon-seq effector memory T cells T1D T1D_2 chip0420_97575 PBMC +2662 CASSDGLLSSYNEQFF TRBV9*01 TRBJ2-1*01 HLA-A*02:01 B2M MHCI GLCTLVAML BLMF1 EBV PMID:34811538 tetramer-sort yes amplicon-seq effector memory T cells T1D T1D_2 chip0420_513612 PBMC +2664 CSGYGAGSYQLAF TRAV25*01 TRAJ28*01 HLA-A*02:01 B2M MHCI CLGGLLTMV LMP2A EBV PMID:34811538 tetramer-sort yes amplicon-seq transitional T cells between effector and memory populations T1D T1D_2 chip0420_92297 PBMC +2665 CADLECW??cNHRKLIW TRAV36/DV7*01 TRAJ38*01 CASSTGQLSNTGELFF TRBV9*01 TRBJ2-2*01 HLA-A*02:01 B2M MHCI GLCTLVAML BLMF1 EBV PMID:34811538 tetramer-sort yes amplicon-seq effector memory T cells T1D T1D_1 chip0420_851073 PBMC +2666 CSVGTGGTNEKLFF TRBV29-1*01 TRBJ1-4*01 HLA-A*02:01 B2M MHCI GLCTLVAML BLMF1 EBV PMID:34811538 tetramer-sort yes amplicon-seq effector memory T cells T1D T1D_2 chip0420_819968 PBMC +2667 CASSMGAHGYTF TRBV19*01 TRBJ1-2*01 HLA-A*02:01 B2M MHCI GILGFVFTL M1 InfluenzaA PMID:34811538 tetramer-sort yes amplicon-seq transitional T cells between effector and memory populations T1D T1D_1 chip0420_361956 PBMC +2668 CASTPLAGGLADTQYF TRBV2*01 TRBJ2-3*01 HLA-A*02:01 B2M MHCI VVTGVLVYL ZNT8 HomoSapiens PMID:34811538 tetramer-sort yes amplicon-seq Naive T cells T1D T1D_1 chip0420_135533 PBMC +2670 CASSTGQGGFSPLHF TRBV19*01 TRBJ1-6*01 HLA-A*02:01 B2M MHCI RLLYPDYQI ZNT8 HomoSapiens PMID:34811538 tetramer-sort yes amplicon-seq Naive T cells T1D T1D_1 chip0420_839181 PBMC +2671 CAGEGGGSQGNLIF TRAV27*01 TRAJ42*01 HLA-A*02:01 B2M MHCI GILGFVFTL M1 InfluenzaA PMID:34811538 tetramer-sort yes amplicon-seq transitional T cells between effector and memory populations T1D T1D_1 chip0420_689724 PBMC +2672 CALGGLTF TRAV8-1*01 TRAJ22*01 HLA-A*02:01 B2M MHCI YVLDHLIVV BRLF1 EBV PMID:34811538 tetramer-sort yes amplicon-seq effector T cells T1D T1D_2 chip0420_826106 PBMC +2674 CALKNTDKLIF TRAV16*01 TRAJ34*01 CASSQSRGSLWDTQYF TRBV4-3*01 TRBJ2-3*01 HLA-A*02:01 B2M MHCI YVLDHLIVV BRLF1 EBV PMID:34811538 tetramer-sort yes amplicon-seq effector memory T cells T1D T1D_2 chip0420_853749 PBMC +2675 CSVGSRGTNEKLFF TRBV29-1*01 TRBJ1-4*01 HLA-A*02:01 B2M MHCI GLCTLVAML BLMF1 EBV PMID:34811538 tetramer-sort yes amplicon-seq effector memory T cells T1D T1D_1 chip0420_617715 PBMC +2676 CASSPDQTSSYNEQFF TRBV27*01 TRBJ2-1*01 HLA-A*02:01 B2M MHCI YVLDHLIVV BRLF1 EBV PMID:34811538 tetramer-sort yes amplicon-seq effector T cells T1D T1D_1 chip0420_133159 PBMC +2677 CVVIGVg?cSYTLIF TRAV12-1*01 TRAJ12*01 HLA-A*02:01 B2M MHCI YLVALGVNAV POL HCV PMID:34811538 tetramer-sort yes amplicon-seq Naive T cells T1D T1D_1 chip0420_697719 PBMC +2678 CPDLACW??aHHRLLIW TRAV36/DV7*01 TRAJ38*01 CASSTGQLSNTGELFF TRBV9*01 TRBJ2-2*01 HLA-A*02:01 B2M MHCI GLCTLVAML BLMF1 EBV PMID:34811538 tetramer-sort yes amplicon-seq effector memory T cells T1D T1D_1 chip0420_681527 PBMC +2679 CASSSGQVLPNEQFF TRBV2*01 TRBJ2-1*01 HLA-A*02:01 B2M MHCI GLCTLVAML BLMF1 EBV PMID:34811538 tetramer-sort yes amplicon-seq effector memory T cells T1D T1D_1 chip0420_133884 PBMC +2680 CSVGTGGTNEKLFF TRBV29-1*01 TRBJ1-4*01 HLA-A*02:01 B2M MHCI GLCTLVAML BLMF1 EBV PMID:34811538 tetramer-sort yes amplicon-seq effector memory T cells T1D T1D_2 chip0420_766655 PBMC +2681 CVGPRAGGFQTIF TRAV12-1*01 TRAJ9*01 CASSEAFLADNEQFF TRBV6-4*01 TRBJ2-1*01 HLA-A*02:01 B2M MHCI YVLDHLIVV BRLF1 EBV PMID:34811538 tetramer-sort yes amplicon-seq effector memory T cells T1D T1D_1 chip0420_727898 PBMC +2682 LAVSDRDGGFKTSF TRAV8-4*01 TRAJ9*01 LCQ*YKWgg??gcRRAGYTF TRBV19*01 TRBJ1-2*01 HLA-A*02:01 B2M MHCI GILGFVFTL M1 InfluenzaA PMID:34811538 tetramer-sort yes amplicon-seq transitional T cells between effector and memory populations T1D T1D_1 chip0420_760269 PBMC +2683 CSVGSRGTNEKLFF TRBV29-1*01 TRBJ1-4*01 HLA-A*02:01 B2M MHCI GLCTLVAML BLMF1 EBV PMID:34811538 tetramer-sort yes amplicon-seq effector memory T cells T1D T1D_1 chip0420_534084 PBMC +2684 CAWRGEPSYNEQFF TRBV30*01 TRBJ2-1*01 HLA-A*02:01 B2M MHCI YVLDHLIVV BRLF1 EBV PMID:34811538 tetramer-sort yes amplicon-seq effector memory T cells T1D T1D_2 chip0420_150922 PBMC +2685 CASNSAGNNEQFF TRBV9*01 TRBJ2-1*01 HLA-A*02:01 B2M MHCI GLCTLVAML BLMF1 EBV PMID:34811538 tetramer-sort yes amplicon-seq effector memory T cells T1D T1D_2 chip0420_63239 PBMC +2686 CASSTGQLSNTGELFF TRBV9*01 TRBJ2-2*01 HLA-A*02:01 B2M MHCI GLCTLVAML BLMF1 EBV PMID:34811538 tetramer-sort yes amplicon-seq effector T cells T1D T1D_1 chip0420_797844 PBMC +2687 CVVNGRDSSYKLIF TRAV12-1*01 TRAJ12*01 CASSSGLVAPGELFF TRBV2*01 TRBJ2-2*01 HLA-A*02:01 B2M MHCI GLCTLVAML BLMF1 EBV PMID:34811538 tetramer-sort yes amplicon-seq effector memory T cells T1D T1D_2 chip0420_224399 PBMC +2688 CGPAEPNDYKLSF TRAV30*01 TRAJ20*01 CASSTGQLSNTGELFF TRBV9*01 TRBJ2-2*01 HLA-A*02:01 B2M MHCI GLCTLVAML BLMF1 EBV PMID:34811538 tetramer-sort yes amplicon-seq effector memory T cells T1D T1D_1 chip0420_415509 PBMC +2689 CASSIRSAYEQYF TRBV19*01 TRBJ2-7*01 HLA-A*02:01 B2M MHCI GILGFVFTL M1 InfluenzaA PMID:34811538 tetramer-sort yes amplicon-seq transitional T cells between effector and memory populations healthy healthy_1 chip0420_645859 PBMC +2690 CASSDGRVHPGTQYF TRBV2*01 TRBJ2-5*01 HLA-A*02:01 B2M MHCI GLCTLVAML BLMF1 EBV PMID:34811538 tetramer-sort yes amplicon-seq effector memory T cells T1D T1D_1 chip0420_104970 PBMC +2692 CASSTGQLSNTGELFF TRBV9*01 TRBJ2-2*01 HLA-A*02:01 B2M MHCI GLCTLVAML BLMF1 EBV PMID:34811538 tetramer-sort yes amplicon-seq effector T cells T1D T1D_1 chip0420_661877 PBMC +2693 CAVKGYDKIIF TRAV8-1*01 TRAJ30*01 CASSPDQTSSYNEQFF TRBV27*01 TRBJ2-1*01 HLA-A*02:01 B2M MHCI YVLDHLIVV BRLF1 EBV PMID:34811538 tetramer-sort yes amplicon-seq effector memory T cells T1D T1D_1 chip0420_363644 PBMC +2696 CSVGTGGTNEKLFF TRBV29-1*01 TRBJ1-4*01 HLA-A*02:01 B2M MHCI GLCTLVAML BLMF1 EBV PMID:34811538 tetramer-sort yes amplicon-seq effector memory T cells T1D T1D_2 chip0420_54576 PBMC +2697 CSAIDTSGTGGYEQYF TRBV20-1*01 TRBJ2-7*01 HLA-A*02:01 B2M MHCI LLFNILGGWV NS4B HCV PMID:34811538 tetramer-sort yes amplicon-seq effector memory T cells T1D T1D_1 chip0420_766877 PBMC +2698 CAMRLSIFGNEKLTF TRAV12-3*01 TRAJ48*01 CASSAGTGNEKLFF TRBV12-3*01,TRBV12-4*01 TRBJ1-4*01 HLA-A*02:01 B2M MHCI LLAGIGTVPI PGT HomoSapiens PMID:34811538 tetramer-sort yes amplicon-seq Naive T cells T1D T1D_2 chip0420_520815 PBMC +2699 CAVVLGYSTLTF TRAV12-2*01 TRAJ11*01 HLA-A*02:01 B2M MHCI LLAGIGTVPI PGT HomoSapiens PMID:34811538 tetramer-sort yes amplicon-seq Naive T cells T1D T1D_1 chip0420_455140 PBMC +2700 CASSSGGNVDTQYF TRBV7-3*01 TRBJ2-3*01 HLA-A*02:01 B2M MHCI GLCTLVAML BLMF1 EBV PMID:34811538 tetramer-sort yes amplicon-seq effector memory T cells T1D T1D_1 chip0420_236387 PBMC +2702 CAVNKENTDKLIF TRAV12-2*01 TRAJ34*01 CASSIGAGVKFF TRBV19*01 TRBJ2-1*01 HLA-A*02:01 B2M MHCI GILGFVFTL M1 InfluenzaA PMID:34811538 tetramer-sort yes amplicon-seq transitional T cells between effector and memory populations T1D T1D_1 chip0420_12158 PBMC +2704 CAVKGYDKIIF TRAV8-1*01 TRAJ30*01 CASSPDQTSSYNEQFF TRBV27*01 TRBJ2-1*01 HLA-A*02:01 B2M MHCI YVLDHLIVV BRLF1 EBV PMID:34811538 tetramer-sort yes amplicon-seq effector T cells T1D T1D_1 chip0420_621526 PBMC +2706 CATVGDSGYSTLTF TRAV17*01 TRAJ11*01 CASSPQGGASEAFF TRBV6-1*01 TRBJ1-1*01 HLA-A*02:01 B2M MHCI FLYALALLL LMP2 EBV PMID:34811538 tetramer-sort yes amplicon-seq central memory T cells T1D T1D_2 chip0420_789927 PBMC +2709 CASSPDYSEQYF TRBV6-5*01,TRBV6-1*01 TRBJ2-7*01 HLA-A*02:01 B2M MHCI YVLDHLIVV BRLF1 EBV PMID:34811538 tetramer-sort yes amplicon-seq effector memory T cells T1D T1D_1 chip0420_349227 PBMC +2710 CASSQGGAGAADTQYF TRBV4-2*01 TRBJ2-3*01 HLA-A*02:01 B2M MHCI YVLDHLIVV BRLF1 EBV PMID:34811538 tetramer-sort yes amplicon-seq effector memory T cells T1D T1D_2 chip0420_339413 PBMC +2712 CASSRQGGKDGYTF TRBV6-1*01 TRBJ1-2*01 HLA-A*02:01 B2M MHCI FLYALALLL LMP2 EBV PMID:34811538 tetramer-sort yes amplicon-seq central memory T cells T1D T1D_2 chip0420_799513 PBMC +2715 CASNLAGNNEQFF TRBV9*01 TRBJ2-1*01 HLA-A*02:01 B2M MHCI GLCTLVAML BLMF1 EBV PMID:34811538 tetramer-sort yes amplicon-seq effector memory T cells T1D T1D_2 chip0420_121031 PBMC +2716 CAMLRSNFGNEKLTF TRAV12-3*01 TRAJ48*01 CASSLAAGELTSTDTQYF TRBV11-1*01 TRBJ2-3*01 HLA-A*02:01 B2M MHCI LLAGIGTVPI PGT HomoSapiens PMID:34811538 tetramer-sort yes amplicon-seq Naive T cells T1D T1D_1 chip0420_100817 PBMC +2717 CAYRSPPSSEKLVF TRAV38-2/DV8*01 TRAJ57*01 CATQQGRDSQPQHF TRBV28*01 TRBJ1-5*01 HLA-A*02:01 B2M MHCI GLCTLVAML BLMF1 EBV PMID:34811538 tetramer-sort yes amplicon-seq effector memory T cells T1D T1D_1 chip0420_224819 PBMC +2718 CASSSGGNVDTQYF TRBV7-3*01 TRBJ2-3*01 HLA-A*02:01 B2M MHCI GLCTLVAML BLMF1 EBV PMID:34811538 tetramer-sort yes amplicon-seq effector memory T cells T1D T1D_1 chip0420_597744 PBMC +2720 CGPEEPNDYKLSF TRAV30*01 TRAJ20*01 HLA-A*02:01 B2M MHCI GLCTLVAML BLMF1 EBV PMID:34811538 tetramer-sort yes amplicon-seq effector memory T cells T1D T1D_1 chip0420_410617 PBMC +2721 CASSFLASGGDNEQFF TRBV11-2*01 TRBJ2-1*01 HLA-A*02:01 B2M MHCI LLAGIGTVPI PGT HomoSapiens PMID:34811538 tetramer-sort yes amplicon-seq Naive T cells T1D T1D_1 chip0420_199945 PBMC +2724 CAGSYSRTGGPHSGNTIYF TRBV6-2*01,TRBV6-3*01 TRBJ1-3*01 HLA-A*02:01 B2M MHCI KLVALGINNV POL HCV PMID:34811538 tetramer-sort yes amplicon-seq Naive T cells T1D T1D_1 chip0420_806500 PBMC +2725 CSVGTGGTNEKLFF TRBV29-1*01 TRBJ1-4*01 HLA-A*02:01 B2M MHCI GLCTLVAML BLMF1 EBV PMID:34811538 tetramer-sort yes amplicon-seq effector memory T cells T1D T1D_2 chip0420_686309 PBMC +2726 CLVGDQPSDGQLLLF TRAV4*01 TRAJ16*01 CASSSLSGGTDTQYF TRBV28*01 TRBJ2-3*01 HLA-A*02:01 B2M MHCI LLAGIGTVPI PGT HomoSapiens PMID:34811538 tetramer-sort yes amplicon-seq Naive T cells T1D T1D_1 chip0420_406126 PBMC +2727 CSVGSRGTNEKLFF TRBV29-1*01 TRBJ1-4*01 HLA-A*02:01 B2M MHCI GLCTLVAML BLMF1 EBV PMID:34811538 tetramer-sort yes amplicon-seq effector memory T cells T1D T1D_1 chip0420_315248 PBMC +2728 CAVRSLat??atGNKLVF TRAV21*01 TRAJ47*01 HLA-A*02:01 B2M MHCI GILGFVFTL M1 InfluenzaA PMID:34811538 tetramer-sort yes amplicon-seq transitional T cells between effector and memory populations T1D T1D_1 chip0420_288650 PBMC +2729 CAMREGVVEYGNKLVF TRAV14/DV4*01 TRAJ47*01 CASSFGTGELFF TRBV19*01 TRBJ2-2*01 HLA-A*02:01 B2M MHCI GILGFVFTL M1 InfluenzaA PMID:34811538 tetramer-sort yes amplicon-seq transitional T cells between effector and memory populations T1D T1D_1 chip0420_841432 PBMC +2730 CVAGIGF TRAV12-1*01 TRAJ48*01,TRAJ11*01 CASRLGISENTIYF TRBV5-1*01 TRBJ1-3*01 HLA-A*02:01 B2M MHCI LLAGIGTVPI PGT HomoSapiens PMID:34811538 tetramer-sort yes amplicon-seq Naive T cells T1D T1D_1 chip0420_748681 PBMC +2732 CASRQAPQ??gGASTEAFF TRBV3-1*01 TRBJ1-1*01 HLA-A*02:01 B2M MHCI LLAGIGTVPI PGT HomoSapiens PMID:34811538 tetramer-sort yes amplicon-seq Naive T cells T1D T1D_1 chip0420_721238 PBMC +2735 *AASELTGASSKLTF TRAV29/DV5*01 TRAJ56*01 CASRAGAGDTQYF TRBV10-2*01 TRBJ2-3*01 HLA-A*02:01 B2M MHCI GLCTLVAML BLMF1 EBV PMID:34811538 tetramer-sort yes amplicon-seq effector memory T cells T1D T1D_2 chip0420_486889 PBMC +2736 CAVKDTDKLIF TRAV8-1*01 TRAJ34*01 HLA-A*02:01 B2M MHCI YVLDHLIVV BRLF1 EBV PMID:34811538 tetramer-sort yes amplicon-seq effector memory T cells T1D T1D_2 chip0420_316469 PBMC +2737 CASSSGLVAPGELFF TRBV2*01 TRBJ2-2*01 HLA-A*02:01 B2M MHCI GLCTLVAML BLMF1 EBV PMID:34811538 tetramer-sort yes amplicon-seq effector memory T cells T1D T1D_2 chip0420_88245 PBMC +2738 CATSDFLEETQYF TRBV24-1*01 TRBJ2-5*01 HLA-A*02:01 B2M MHCI YVLDHLIVV BRLF1 EBV PMID:34811538 tetramer-sort yes amplicon-seq effector memory T cells T1D T1D_2 chip0420_634722 PBMC +2739 CAVKGYDKIIF TRAV8-1*01 TRAJ30*01 CASSPDQTSSYNEQFF TRBV27*01 TRBJ2-1*01 HLA-A*02:01 B2M MHCI YVLDHLIVV BRLF1 EBV PMID:34811538 tetramer-sort yes amplicon-seq effector T cells T1D T1D_1 chip0420_672466 PBMC +2740 CVVNGRDSSYKLIF TRAV12-1*01 TRAJ12*01 CASSSGLVAPGELFF TRBV2*01 TRBJ2-2*01 HLA-A*02:01 B2M MHCI GLCTLVAML BLMF1 EBV PMID:34811538 tetramer-sort yes amplicon-seq effector memory T cells T1D T1D_2 chip0420_157453 PBMC +2741 CASSPVSGSTYEQYF TRBV3-1*01 TRBJ2-7*01 HLA-A*02:01 B2M MHCI GLCTLVAML BLMF1 EBV PMID:34811538 tetramer-sort yes amplicon-seq effector T cells T1D T1D_1 chip0420_586603 PBMC +2742 CVVVYGGYQKVTF TRAV12-1*01 TRAJ13*01 CASSPLLDSYNEQFF TRBV7-9*01 TRBJ2-1*01 HLA-A*02:01 B2M MHCI FLWSVFWLI IGRP HomoSapiens PMID:34811538 tetramer-sort yes amplicon-seq Naive T cells T1D T1D_2 chip0420_669972 PBMC +2743 WASSPRANSPLHF TRBV19*01 TRBJ1-6*01 HLA-A*02:01 B2M MHCI VLFGLGFAI IGRP HomoSapiens PMID:34811538 tetramer-sort yes amplicon-seq Naive T cells T1D T1D_1 chip0420_485173 PBMC +2744 CAAYAGNMLTF TRAV29/DV5*01 TRAJ39*01 CASRAGAGDTQYF TRBV10-2*01 TRBJ2-3*01 HLA-A*02:01 B2M MHCI GLCTLVAML BLMF1 EBV PMID:34811538 tetramer-sort yes amplicon-seq effector memory T cells T1D T1D_2 chip0420_430037 PBMC +2745 CAVRAP*c?tPPARLMF TRAV8-6*01 TRAJ31*01 CSVGTGGTNEKLFF TRBV29-1*01 TRBJ1-4*01 HLA-A*02:01 B2M MHCI YVLDHLIVV BRLF1 EBV PMID:34811538 tetramer-sort yes amplicon-seq effector memory T cells T1D T1D_2 chip0420_297362 PBMC +2749 CSSQEGGYGYTF TRBV29-1*01 TRBJ1-2*01 HLA-A*02:01 B2M MHCI GLCTLVAML BLMF1 EBV PMID:34811538 tetramer-sort yes amplicon-seq effector memory T cells T1D T1D_2 chip0420_872916 PBMC +2751 CSVGTGGTNEKLFF TRBV29-1*01 TRBJ1-4*01 HLA-A*02:01 B2M MHCI GLCTLVAML BLMF1 EBV PMID:34811538 tetramer-sort yes amplicon-seq effector memory T cells T1D T1D_2 chip0420_750218 PBMC +2752 CALKNTDKLIF TRAV16*01 TRAJ34*01 CASSQSRGSLWDTQYF TRBV4-3*01 TRBJ2-3*01 HLA-A*02:01 B2M MHCI YVLDHLIVV BRLF1 EBV PMID:34811538 tetramer-sort yes amplicon-seq effector memory T cells T1D T1D_2 chip0420_339395 PBMC +2753 CAFITGAGGPSSGALPF TRAV38-1*01 TRAJ52*01 CASSAGSSGYTF TRBV19*01 TRBJ1-2*01 HLA-A*02:01 B2M MHCI GILGFVFTL M1 InfluenzaA PMID:34811538 tetramer-sort yes amplicon-seq transitional T cells between effector and memory populations T1D T1D_2 chip0420_291734 PBMC +2754 CASRMGAGDTQYF TRBV10-2*01 TRBJ2-3*01 HLA-A*02:01 B2M MHCI GLCTLVAML BLMF1 EBV PMID:34811538 tetramer-sort yes amplicon-seq effector memory T cells T1D T1D_2 chip0420_128149 PBMC +2755 CAISEGTLSSYNEQFF TRBV10-3*01 TRBJ2-1*01 HLA-A*02:01 B2M MHCI YVLDHLIVV BRLF1 EBV PMID:34811538 tetramer-sort yes amplicon-seq effector T cells T1D T1D_1 chip0420_223360 PBMC +2756 CASRRDGTEAFF TRBV30*01 TRBJ1-1*01 HLA-A*02:01 B2M MHCI GIIYIIYKL P3A CoxsackievirusB PMID:34811538 tetramer-sort yes amplicon-seq central memory T cells T1D T1D_1 chip0420_708035 PBMC +2757 CASSPVSGSTYEQYF TRBV3-1*01 TRBJ2-7*01 HLA-A*02:01 B2M MHCI GLCTLVAML BLMF1 EBV PMID:34811538 tetramer-sort yes amplicon-seq effector T cells T1D T1D_1 chip0420_540821 PBMC +2759 CAVGAGFRSIF TRAV8-3*01 TRAJ9*01 HLA-A*02:01 B2M MHCI ALWMRLLPL PREINS HomoSapiens PMID:34811538 tetramer-sort yes amplicon-seq Naive T cells healthy healthy_2 chip0420_720456 PBMC +2760 CSVGSRGTNEKLFF TRBV29-1*01 TRBJ1-4*01 HLA-A*02:01 B2M MHCI GLCTLVAML BLMF1 EBV PMID:34811538 tetramer-sort yes amplicon-seq effector memory T cells T1D T1D_1 chip0420_847401 PBMC +2761 CASSFGQGADTQYF TRBV27*01 TRBJ2-3*01 HLA-A*02:01 B2M MHCI GILGFVFTL M1 InfluenzaA PMID:34811538 tetramer-sort yes amplicon-seq transitional T cells between effector and memory populations T1D T1D_1 chip0420_494974 PBMC +2762 CAA??tVTL TRAV2*01 TRAJ48*01 HLA-A*02:01 B2M MHCI GLCTLVAML BLMF1 EBV PMID:34811538 tetramer-sort yes amplicon-seq effector memory T cells T1D T1D_1 chip0420_409524 PBMC +2763 CAVSDTG??cRTYKYIF TRAV8-6*01 TRAJ40*01 HLA-A*02:01 B2M MHCI YVLDHLIVV BRLF1 EBV PMID:34811538 tetramer-sort yes amplicon-seq effector memory T cells T1D T1D_1 chip0420_381885 PBMC +2767 CAMRVQMDSNYQLIW TRAV14/DV4*01 TRAJ33*01 HLA-A*02:01 B2M MHCI GLCTLVAML BLMF1 EBV PMID:34811538 tetramer-sort yes amplicon-seq effector memory T cells T1D T1D_2 chip0420_287538 PBMC +2769 CVVNLPNDYKLSF TRAV12-1*01 TRAJ20*01 HLA-A*02:01 B2M MHCI GLCTLVAML BLMF1 EBV PMID:34811538 tetramer-sort yes amplicon-seq effector T cells T1D T1D_2 chip0420_686529 PBMC +2770 CASSQSPGGTQYF TRBV14*01 TRBJ2-3*01 HLA-A*02:01 B2M MHCI GLCTLVAML BLMF1 EBV PMID:34811538 tetramer-sort yes amplicon-seq effector memory T cells T1D T1D_1 chip0420_284701 PBMC +2774 CASSPQGGASEAFF TRBV6-1*01 TRBJ1-1*01 HLA-A*02:01 B2M MHCI FLYALALLL LMP2 EBV PMID:34811538 tetramer-sort yes amplicon-seq central memory T cells T1D T1D_2 chip0420_418903 PBMC +2775 CATQQGRDSQPQHF TRBV28*01 TRBJ1-5*01 HLA-A*02:01 B2M MHCI GLCTLVAML BLMF1 EBV PMID:34811538 tetramer-sort yes amplicon-seq effector memory T cells T1D T1D_1 chip0420_795726 PBMC +2777 CALYNTDKLIF TRAV9-2*01 TRAJ34*01 HLA-A*02:01 B2M MHCI GLCTLVAML BLMF1 EBV PMID:34811538 tetramer-sort yes amplicon-seq effector memory T cells T1D T1D_1 chip0420_728861 PBMC +2780 CSVGSRGTNEKLFF TRBV29-1*01 TRBJ1-4*01 HLA-A*02:01 B2M MHCI GLCTLVAML BLMF1 EBV PMID:34811538 tetramer-sort yes amplicon-seq effector T cells T1D T1D_1 chip0420_141316 PBMC +2781 CASSIRSSYEQYF TRBV19*01 TRBJ2-7*01 HLA-A*02:01 B2M MHCI GILGFVFTL M1 InfluenzaA PMID:34811538 tetramer-sort yes amplicon-seq transitional T cells between effector and memory populations T1D T1D_1 chip0420_816193 PBMC +2783 CVVNGRDSSYKLIF TRAV12-1*01 TRAJ12*01 CASRSGLVAPGELFF TRBV2*01 TRBJ2-2*01 HLA-A*02:01 B2M MHCI GLCTLVAML BLMF1 EBV PMID:34811538 tetramer-sort yes amplicon-seq effector T cells T1D T1D_2 chip0420_173768 PBMC +2785 CAMREDNAGNMLTF TRAV14/DV4*01 TRAJ39*01 CASSIIDRTLGTDTQYF TRBV19*01 TRBJ2-3*01 HLA-A*02:01 B2M MHCI GILGFVFTL M1 InfluenzaA PMID:34811538 tetramer-sort yes amplicon-seq transitional T cells between effector and memory populations T1D T1D_1 chip0420_103464 PBMC +2786 CALIQLGAGNNRKLIW TRAV16*01 TRAJ38*01 HLA-A*01:01 B2M MHCI VSATAGTTVY GAD2 HomoSapiens PMID:34811538 tetramer-sort yes amplicon-seq Naive T cells T1D T1D_3 chip0420_553141 PBMC +2788 CAFSISNFGNEKLTF TRAV12-3*01 TRAJ48*01 HLA-A*02:01 B2M MHCI LLAGIGTVPI PGT HomoSapiens PMID:34811538 tetramer-sort yes amplicon-seq Naive T cells T1D T1D_2 chip0420_248597 PBMC +2789 CASKGIDGYTF TRBV13*01 TRBJ1-2*01 HLA-A*02:01 B2M MHCI YVLDHLIVV BRLF1 EBV PMID:34811538 tetramer-sort yes amplicon-seq effector T cells T1D T1D_2 chip0420_119958 PBMC +2790 CAVDAGNKGGFKTIF TRAV12-2*01 TRAJ9*01 HLA-A*02:01 B2M MHCI LLAGIGTVPI PGT HomoSapiens PMID:34811538 tetramer-sort yes amplicon-seq Naive T cells T1D T1D_1 chip0420_79197 PBMC +2791 CASSTGQLSNTGELFF TRBV9*01 TRBJ2-2*01 HLA-A*02:01 B2M MHCI GLCTLVAML BLMF1 EBV PMID:34811538 tetramer-sort yes amplicon-seq effector memory T cells T1D T1D_1 chip0420_60524 PBMC +2795 CARGGNTPLVF TRAV12-1*01 TRAJ29*01 CASSTGWGVDEQFL TRBV6-2*01,TRBV6-3*01 TRBJ2-1*01 HLA-A*02:01 B2M MHCI LLAGIGTVPI PGT HomoSapiens PMID:34811538 tetramer-sort yes amplicon-seq Naive T cells T1D T1D_1 chip0420_61089 PBMC +2796 CASRMGAGDTQYF TRBV10-2*01 TRBJ2-3*01 HLA-A*02:01 B2M MHCI GLCTLVAML BLMF1 EBV PMID:34811538 tetramer-sort yes amplicon-seq effector memory T cells T1D T1D_2 chip0420_382825 PBMC +2798 CSVGSRGTNEKLFF TRBV29-1*01 TRBJ1-4*01 HLA-A*02:01 B2M MHCI GLCTLVAML BLMF1 EBV PMID:34811538 tetramer-sort yes amplicon-seq effector memory T cells T1D T1D_1 chip0420_872875 PBMC +2800 CASRAGAGDTQYF TRBV10-2*01 TRBJ2-3*01 HLA-A*02:01 B2M MHCI GLCTLVAML BLMF1 EBV PMID:34811538 tetramer-sort yes amplicon-seq effector memory T cells T1D T1D_2 chip0420_599767 PBMC +2801 CASSPSGNKQYF TRBV4-1*01 TRBJ2-7*01 HLA-A*02:01 B2M MHCI ALAGIGILTV MART1 HomoSapiens PMID:34811538 tetramer-sort yes amplicon-seq Naive T cells T1D T1D_1 chip0420_326573 PBMC +2802 CGTEEPNDYKLSF TRAV30*01 TRAJ20*01 HLA-A*02:01 B2M MHCI GLCTLVAML BLMF1 EBV PMID:34811538 tetramer-sort yes amplicon-seq effector T cells T1D T1D_1 chip0420_557086 PBMC +2804 CATAGDSGYSTLTF TRAV17*01 TRAJ11*01 HLA-A*02:01 B2M MHCI FLYALALLL LMP2 EBV PMID:34811538 tetramer-sort yes amplicon-seq central memory T cells T1D T1D_2 chip0420_804031 PBMC +2805 CASSPERGRNTEAFF TRBV25-1*01 TRBJ1-1*01 HLA-A*02:01 B2M MHCI LLAGIGTVPI PGT HomoSapiens PMID:34811538 tetramer-sort yes amplicon-seq Naive T cells T1D T1D_1 chip0420_798635 PBMC +2806 CASGLSGGDTQYF TRBV19*01 TRBJ2-3*01 HLA-A*02:01 B2M MHCI ALWMRLLPL PREINS HomoSapiens PMID:34811538 tetramer-sort yes amplicon-seq Naive T cells T1D T1D_1 chip0420_833134 PBMC +2807 CASCVGAGETRYF TRBV19*01 TRBJ2-5*01 HLA-A*02:01 B2M MHCI GILGFVFTL M1 InfluenzaA PMID:34811538 tetramer-sort yes amplicon-seq transitional T cells between effector and memory populations T1D T1D_1 chip0420_757672 PBMC +2808 CASSSGLVAPGELFF TRBV2*01 TRBJ2-2*01 HLA-A*02:01 B2M MHCI GLCTLVAML BLMF1 EBV PMID:34811538 tetramer-sort yes amplicon-seq effector memory T cells T1D T1D_2 chip0420_27166 PBMC +2809 CVVNGGDSSYKLIF TRAV12-1*01 TRAJ12*01 CASSSGQVLPNEQFF TRBV2*01 TRBJ2-1*01 HLA-A*02:01 B2M MHCI GLCTLVAML BLMF1 EBV PMID:34811538 tetramer-sort yes amplicon-seq effector memory T cells T1D T1D_1 chip0420_670091 PBMC +2810 CASSIRSAYEQYF TRBV19*01 TRBJ2-7*01 HLA-A*02:01 B2M MHCI GILGFVFTL M1 InfluenzaA PMID:34811538 tetramer-sort yes amplicon-seq transitional T cells between effector and memory populations T1D T1D_1 chip0420_231014 PBMC +2812 CASSDGRAHPGTQYF TRBV2*01 TRBJ2-5*01 HLA-A*02:01 B2M MHCI GLCTLVAML BLMF1 EBV PMID:34811538 tetramer-sort yes amplicon-seq effector memory T cells T1D T1D_1 chip0420_336900 PBMC +2814 CSVGSRGTNEKLFF TRBV29-1*01 TRBJ1-4*01 HLA-A*02:01 B2M MHCI GLCTLVAML BLMF1 EBV PMID:34811538 tetramer-sort yes amplicon-seq effector memory T cells T1D T1D_1 chip0420_366904 PBMC +2816 CALGERPGGSYIPTF TRAV6*01 TRAJ6*01 CASSAGRVHPGTQYF TRBV2*01 TRBJ2-5*01 HLA-A*02:01 B2M MHCI GLCTLVAML BLMF1 EBV PMID:34811538 tetramer-sort yes amplicon-seq effector memory T cells T1D T1D_1 chip0420_499811 PBMC +2817 CSVGTGGTNEKLFF TRBV29-1*01 TRBJ1-4*01 HLA-A*02:01 B2M MHCI GLCTLVAML BLMF1 EBV PMID:34811538 tetramer-sort yes amplicon-seq effector memory T cells T1D T1D_2 chip0420_804242 PBMC +2818 CSVGTGGTNEKLFF TRBV29-1*01 TRBJ1-4*01 HLA-A*02:01 B2M MHCI GLCTLVAML BLMF1 EBV PMID:34811538 tetramer-sort yes amplicon-seq effector memory T cells T1D T1D_2 chip0420_603833 PBMC +2819 CASSPVSGSTYEQYF TRBV3-1*01 TRBJ2-7*01 HLA-A*02:01 B2M MHCI GLCTLVAML BLMF1 EBV PMID:34811538 tetramer-sort yes amplicon-seq effector memory T cells T1D T1D_1 chip0420_253651 PBMC +2820 CAMSGSNFGHEKLTF TRAV12-3*01 TRAJ48*01 CANSAGTVAPGELFF TRBV2*01 TRBJ2-2*01 HLA-A*02:01 B2M MHCI GLCTLVAML BLMF1 EBV PMID:34811538 tetramer-sort yes amplicon-seq effector T cells T1D T1D_1 chip0420_115759 PBMC +2821 CVVNGRDSSYKLIF TRAV12-1*01 TRAJ12*01 CASSSGLVAPGELFF TRBV2*01 TRBJ2-2*01 HLA-A*02:01 B2M MHCI GLCTLVAML BLMF1 EBV PMID:34811538 tetramer-sort yes amplicon-seq effector T cells T1D T1D_2 chip0420_567329 PBMC +2822 CASSISSTDTQYV TRBV19*01 TRBJ2-3*01 HLA-A*02:01 B2M MHCI GILGFVFTL M1 InfluenzaA PMID:34811538 tetramer-sort yes amplicon-seq transitional T cells between effector and memory populations T1D T1D_1 chip0420_221171 PBMC +2824 CASSINGGRRDGYTF TRBV19*01 TRBJ1-2*01 HLA-A*02:01 B2M MHCI GILGFVFTL M1 InfluenzaA PMID:34811538 tetramer-sort yes amplicon-seq transitional T cells between effector and memory populations T1D T1D_1 chip0420_408145 PBMC +2825 CAWSDQLGAARELFF TRBV30*01 TRBJ2-2*01 HLA-A*02:01 B2M MHCI YVLDHLIVV BRLF1 EBV PMID:34811538 tetramer-sort yes amplicon-seq effector memory T cells T1D T1D_2 chip0420_508737 PBMC +2826 CAVKETGKLIF TRAV8-1*01 TRAJ37*01 CASTSGSGFEQYF TRBV7-9*01 TRBJ2-7*01 HLA-A*02:01 B2M MHCI YVLDHLIVV BRLF1 EBV PMID:34811538 tetramer-sort yes amplicon-seq effector memory T cells T1D T1D_2 chip0420_540736 PBMC +2827 CAVKDTDKLIF TRAV8-1*01 TRAJ34*01 HLA-A*02:01 B2M MHCI YVLDHLIVV BRLF1 EBV PMID:34811538 tetramer-sort yes amplicon-seq transitional T cells between effector and memory populations T1D T1D_1 chip0420_334609 PBMC +2828 CSVGSRGTNEKLFF TRBV29-1*01 TRBJ1-4*01 HLA-A*02:01 B2M MHCI GLCTLVAML BLMF1 EBV PMID:34811538 tetramer-sort yes amplicon-seq effector memory T cells T1D T1D_1 chip0420_523753 PBMC +2829 CTSSRQGGKDGYTF TRBV6-1*01 TRBJ1-2*01 HLA-A*02:01 B2M MHCI FLYALALLL LMP2 EBV PMID:34811538 tetramer-sort yes amplicon-seq central memory T cells T1D T1D_2 chip0420_224267 PBMC +2831 CAEAANQAGTALIF TRAV5*01 TRAJ15*01 CASSQSPGGTQYF TRBV14*01 TRBJ2-3*01 HLA-A*02:01 B2M MHCI GLCTLVAML BLMF1 EBV PMID:34811538 tetramer-sort yes amplicon-seq effector memory T cells T1D T1D_1 chip0420_404616 PBMC +2832 CASSPVSGSTYEQYF TRBV3-1*01 TRBJ2-7*01 HLA-A*02:01 B2M MHCI GLCTLVAML BLMF1 EBV PMID:34811538 tetramer-sort yes amplicon-seq effector T cells T1D T1D_1 chip0420_615190 PBMC +2833 CASSRRTLNSGANVLTF TRBV13*01 TRBJ2-6*01 HLA-A*02:01 B2M MHCI YVLDHLIVV BRLF1 EBV PMID:34811538 tetramer-sort yes amplicon-seq effector T cells T1D T1D_2 chip0420_477994 PBMC +2834 CVVNGRDSSYKLIF TRAV12-1*01 TRAJ12*01 HLA-A*02:01 B2M MHCI GLCTLVAML BLMF1 EBV PMID:34811538 tetramer-sort yes amplicon-seq effector memory T cells T1D T1D_2 chip0420_644946 PBMC +2836 CASSSGLVAPGELFF TRBV2*01 TRBJ2-2*01 HLA-A*02:01 B2M MHCI GLCTLVAML BLMF1 EBV PMID:34811538 tetramer-sort yes amplicon-seq effector memory T cells T1D T1D_2 chip0420_546514 PBMC +2839 CVVAASGGSYIPTF TRAV12-1*01 TRAJ6*01 HLA-A*02:01 B2M MHCI YLQQNWWTL LMP1 EBV PMID:34811538 tetramer-sort yes amplicon-seq transitional T cells between effector and memory populations T1D T1D_2 chip0420_755285 PBMC +2840 CSVSAcg??gtNQFYF TRAV27*01 TRAJ49*01 HLA-A*02:01 B2M MHCI LLAGIGTVPI PGT HomoSapiens PMID:34811538 tetramer-sort yes amplicon-seq Naive T cells T1D T1D_2 chip0420_562667 PBMC +2842 CASSDGRVHPGTQYF TRBV2*01 TRBJ2-5*01 HLA-A*02:01 B2M MHCI GLCTLVAML BLMF1 EBV PMID:34811538 tetramer-sort yes amplicon-seq effector memory T cells T1D T1D_1 chip0420_454465 PBMC +2843 CASSIRAAYEQYF TRBV19*01 TRBJ2-7*01 HLA-A*02:01 B2M MHCI GILGFVFTL M1 InfluenzaA PMID:34811538 tetramer-sort yes amplicon-seq transitional T cells between effector and memory populations healthy healthy_1 chip0420_97642 PBMC +2845 CASSIRAGGAYEQYF TRBV28*01 TRBJ2-7*01 HLA-A*02:01 B2M MHCI YLLEMLWRL LMP1 EBV PMID:34811538 tetramer-sort yes amplicon-seq effector memory T cells T1D T1D_1 chip0420_616639 PBMC +2846 CAVSDRDGGFKTIF TRAV8-4*01 TRAJ9*01 CSVGTGGTNEKLFF TRBV29-1*01 TRBJ1-4*01 HLA-A*02:01 B2M MHCI GLCTLVAML BLMF1 EBV PMID:34811538 tetramer-sort yes amplicon-seq effector memory T cells T1D T1D_2 chip0420_596496 PBMC +2847 CASSTGQLSNTGELFF TRBV9*01 TRBJ2-2*01 HLA-A*02:01 B2M MHCI GLCTLVAML BLMF1 EBV PMID:34811538 tetramer-sort yes amplicon-seq effector memory T cells T1D T1D_1 chip0420_1346 PBMC +2848 CPLEWLP??cNTRQLIF TRAV2*01 TRAJ37*01 HLA-A*02:01 B2M MHCI YVLDHLIVV BRLF1 EBV PMID:34811538 tetramer-sort yes amplicon-seq effector memory T cells T1D T1D_2 chip0420_658798 PBMC +2850 CASSPDQTSSYNEQFF TRBV27*01 TRBJ2-1*01 HLA-A*02:01 B2M MHCI YVLDHLIVV BRLF1 EBV PMID:34811538 tetramer-sort yes amplicon-seq effector T cells T1D T1D_1 chip0420_373315 PBMC +2851 CASSPVSGSTYEQYF TRBV3-1*01 TRBJ2-7*01 HLA-A*02:01 B2M MHCI GLCTLVAML BLMF1 EBV PMID:34811538 tetramer-sort yes amplicon-seq effector memory T cells T1D T1D_1 chip0420_872915 PBMC +2852 CASLTPGASKIIF TRAV8-6*01 TRAJ3*01 CASSSGLVAPGELFF TRBV2*01 TRBJ2-2*01 HLA-A*02:01 B2M MHCI GLCTLVAML BLMF1 EBV PMID:34811538 tetramer-sort yes amplicon-seq effector memory T cells T1D T1D_2 chip0420_690944 PBMC +2853 CSVGSRGTNEKLFF TRBV29-1*01 TRBJ1-4*01 HLA-A*02:01 B2M MHCI GLCTLVAML BLMF1 EBV PMID:34811538 tetramer-sort yes amplicon-seq effector memory T cells T1D T1D_1 chip0420_287376 PBMC +2856 CASSEAGRSPYEQYF TRBV6-1*01 TRBJ2-7*01 HLA-A*02:01 B2M MHCI CINGVCWTV NS3 HCV PMID:34811538 tetramer-sort yes amplicon-seq Naive T cells T1D T1D_1 chip0420_352586 PBMC +2857 CAAYAGNMLTF TRAV29/DV5*01 TRAJ39*01 CASRAGAGDTQYF TRBV10-2*01 TRBJ2-3*01 HLA-A*02:01 B2M MHCI GLCTLVAML BLMF1 EBV PMID:34811538 tetramer-sort yes amplicon-seq effector memory T cells T1D T1D_2 chip0420_29664 PBMC +2858 CASSSGLVAPGELFF TRBV2*01 TRBJ2-2*01 HLA-A*02:01 B2M MHCI GLCTLVAML BLMF1 EBV PMID:34811538 tetramer-sort yes amplicon-seq effector memory T cells T1D T1D_2 chip0420_708589 PBMC +2859 CSVGTGGTNEKLFF TRBV29-1*01 TRBJ1-4*01 HLA-A*02:01 B2M MHCI GLCTLVAML BLMF1 EBV PMID:34811538 tetramer-sort yes amplicon-seq effector memory T cells T1D T1D_2 chip0420_677846 PBMC +2860 CASSYSAGSTEAFF TRBV6-5*01 TRBJ1-1*01 HLA-A*02:01 B2M MHCI LLAGIGTVPI PGT HomoSapiens PMID:34811538 tetramer-sort yes amplicon-seq Naive T cells T1D T1D_1 chip0420_358156 PBMC +2861 CVVSTTGNQFYF TRAV12-1*01 TRAJ49*01 CASSQLPGGNQPQHF TRBV4-2*01 TRBJ1-5*01 HLA-A*02:01 B2M MHCI FLWSVFMLI IGRP HomoSapiens PMID:34811538 tetramer-sort yes amplicon-seq Naive T cells T1D T1D_2 chip0420_130593 PBMC +2862 CARCPRPGGTQYF TRBV14*01 TRBJ2-3*01 HLA-A*02:01 B2M MHCI GLCTLVAML BLMF1 EBV PMID:34811538 tetramer-sort yes amplicon-seq effector T cells T1D T1D_1 chip0420_259212 PBMC +2863 CAGAGGGSQGNLIF TRAV27*01 TRAJ42*01 HLA-A*02:01 B2M MHCI GILGFVFTL M1 InfluenzaA PMID:34811538 tetramer-sort yes amplicon-seq transitional T cells between effector and memory populations T1D T1D_1 chip0420_792534 PBMC +2864 CASRAGAGDTQYF TRBV10-2*01 TRBJ2-3*01 HLA-A*02:01 B2M MHCI GLCTLVAML BLMF1 EBV PMID:34811538 tetramer-sort yes amplicon-seq effector T cells T1D T1D_2 chip0420_546752 PBMC +2865 CASSPVSGSTYEQYF TRBV3-1*01 TRBJ2-7*01 HLA-A*02:01 B2M MHCI GLCTLVAML BLMF1 EBV PMID:34811538 tetramer-sort yes amplicon-seq effector memory T cells T1D T1D_1 chip0420_346826 PBMC +2866 CAVDPWGNPFYF TRAV39*01 TRAJ49*01 HLA-A*02:01 B2M MHCI GLCTLVAML BLMF1 EBV PMID:34811538 tetramer-sort yes amplicon-seq effector T cells T1D T1D_1 chip0420_835173 PBMC +2867 CAMSISNFGHEKLPF TRAV12-3*01 TRAJ48*01 HLA-A*02:01 B2M MHCI LLAGIGTVPI PGT HomoSapiens PMID:34811538 tetramer-sort yes amplicon-seq Naive T cells T1D T1D_1 chip0420_600691 PBMC +2868 CASSPGPVGGTEAFF TRBV4-1*01 TRBJ1-1*01 HLA-A*02:01 B2M MHCI LLAGIGTVPI PGT HomoSapiens PMID:34811538 tetramer-sort yes amplicon-seq Naive T cells T1D T1D_1 chip0420_285244 PBMC +2870 CAYSYGPGGTSYGKLTF TRAV38-2/DV8*01 TRAJ52*01 CSSGSGYEQFF TRBV19*01 TRBJ2-1*01 HLA-A*02:01 B2M MHCI GILGFVFTL M1 InfluenzaA PMID:34811538 tetramer-sort yes amplicon-seq transitional T cells between effector and memory populations T1D T1D_1 chip0420_67523 PBMC +2871 CASSYGGLGGNEQFF TRBV6-5*01 TRBJ2-1*01 HLA-A*02:01 B2M MHCI LLAGIGTVPI PGT HomoSapiens PMID:34811538 tetramer-sort yes amplicon-seq central memory T cells T1D T1D_2 chip0420_804843 PBMC +2872 CASTSRELNQPQHF TRBV13*01 TRBJ1-5*01 HLA-A*02:01 B2M MHCI ALWMRLLPL PREINS HomoSapiens PMID:34811538 tetramer-sort yes amplicon-seq Naive T cells T1D T1D_1 chip0420_754838 PBMC +2873 CASRMGAGDTQYF TRBV10-2*01 TRBJ2-3*01 HLA-A*02:01 B2M MHCI GLCTLVAML BLMF1 EBV PMID:34811538 tetramer-sort yes amplicon-seq effector memory T cells T1D T1D_2 chip0420_250859 PBMC +2876 CASSLGPGGTLYC TRBV14*01 TRBJ2-3*01 HLA-A*02:01 B2M MHCI ALAGIGILTV MART1 HomoSapiens PMID:34811538 tetramer-sort yes amplicon-seq effector memory T cells T1D T1D_1 chip0420_574631 PBMC +2877 CALYNTDKLIF TRAV9-2*01 TRAJ34*01 HLA-A*02:01 B2M MHCI GLCTLVAML BLMF1 EBV PMID:34811538 tetramer-sort yes amplicon-seq effector memory T cells T1D T1D_1 chip0420_520686 PBMC +2878 CAFIINAGGTSSGSLSF TRAV38-1*01 TRAJ52*01 HLA-A*02:01 B2M MHCI GILGFVFTL M1 InfluenzaA PMID:34811538 tetramer-sort yes amplicon-seq transitional T cells between effector and memory populations T1D T1D_2 chip0420_406531 PBMC +2879 CSVGTGGTNEKLFF TRBV29-1*01 TRBJ1-4*01 HLA-A*02:01 B2M MHCI GLCTLVAML BLMF1 EBV PMID:34811538 tetramer-sort yes amplicon-seq effector memory T cells T1D T1D_2 chip0420_29367 PBMC +2880 CASSVVGNEQFF TRBV9*01 TRBJ2-1*01 HLA-A*02:01 B2M MHCI GLCTLVAML BLMF1 EBV PMID:34811538 tetramer-sort yes amplicon-seq effector memory T cells T1D T1D_2 chip0420_738487 PBMC +2881 CASSPDQTSSYNEQFF TRBV27*01 TRBJ2-1*01 HLA-A*02:01 B2M MHCI YVLDHLIVV BRLF1 EBV PMID:34811538 tetramer-sort yes amplicon-seq effector T cells T1D T1D_1 chip0420_849851 PBMC +2883 CSARDGSGTVDSPLHF TRBV20-1*01 TRBJ1-6*01 HLA-A*02:01 B2M MHCI GLCTLVAML BLMF1 EBV PMID:34811538 tetramer-sort yes amplicon-seq effector memory T cells T1D T1D_1 chip0420_435388 PBMC +2884 CASRAGAGDTQYF TRBV10-2*01 TRBJ2-3*01 HLA-A*02:01 B2M MHCI GLCTLVAML BLMF1 EBV PMID:34811538 tetramer-sort yes amplicon-seq effector memory T cells T1D T1D_2 chip0420_285807 PBMC +2885 CSATSPSGPTGELFF TRBV20-1*01 TRBJ2-2*01 HLA-A*02:01 B2M MHCI LLAGIGTVPI PGT HomoSapiens PMID:34811538 tetramer-sort yes amplicon-seq Naive T cells healthy healthy_1 chip0420_562102 PBMC +2886 CSVGTGGTNEKLFF TRBV29-1*01 TRBJ1-4*01 HLA-A*02:01 B2M MHCI GLCTLVAML BLMF1 EBV PMID:34811538 tetramer-sort yes amplicon-seq effector memory T cells T1D T1D_2 chip0420_490947 PBMC +2888 CVVNGRDSSYKLIF TRAV12-1*01 TRAJ12*01 CASSSGLVAPGELFF TRBV2*01 TRBJ2-2*01 HLA-A*02:01 B2M MHCI GLCTLVAML BLMF1 EBV PMID:34811538 tetramer-sort yes amplicon-seq effector memory T cells T1D T1D_2 chip0420_597188 PBMC +2889 CAAEGGSGYSTLTF TRAV17*01 TRAJ11*01 HLA-A*02:01 B2M MHCI FLYALALLL LMP2 EBV PMID:34811538 tetramer-sort yes amplicon-seq transitional T cells between effector and memory populations T1D T1D_1 chip0420_371228 PBMC +2890 CASSAGQGLPYEQYF TRBV5-1*01 TRBJ2-7*01 HLA-A*02:01 B2M MHCI GILGFVFTL M1 InfluenzaA PMID:34811538 tetramer-sort yes amplicon-seq transitional T cells between effector and memory populations healthy healthy_1 chip0420_361768 PBMC +2892 CVVNGEDSSYKLIF TRAV12-1*01 TRAJ12*01 CASSSRSSYEQYF TRBV19*01 TRBJ2-7*01 HLA-A*02:01 B2M MHCI GILGFVFTL M1 InfluenzaA PMID:34811538 tetramer-sort yes amplicon-seq transitional T cells between effector and memory populations T1D T1D_1 chip0420_107316 PBMC +2893 CALKHTGNQFYF TRAV16*01 TRAJ49*01 CASRPVVCSYNEQFF TRBV27*01 TRBJ2-1*01 HLA-A*02:01 B2M MHCI YVLDHLIVV BRLF1 EBV PMID:34811538 tetramer-sort yes amplicon-seq effector memory T cells T1D T1D_2 chip0420_750361 PBMC +2894 CGPEEPNDYKLSF TRAV30*01 TRAJ20*01 HLA-A*02:01 B2M MHCI GLCTLVAML BLMF1 EBV PMID:34811538 tetramer-sort yes amplicon-seq effector T cells T1D T1D_1 chip0420_558452 PBMC +2896 CAESTSGGKLIF TRAV5*01 TRAJ23*01 CSVGTGGTNEKLFF TRBV29-1*01 TRBJ1-4*01 HLA-A*02:01 B2M MHCI GLCTLVAML BLMF1 EBV PMID:34811538 tetramer-sort yes amplicon-seq effector memory T cells T1D T1D_2 chip0420_9731 PBMC +2897 CASSQSPGGTQYF TRBV14*01 TRBJ2-3*01 HLA-A*02:01 B2M MHCI GLCTLVAML BLMF1 EBV PMID:34811538 tetramer-sort yes amplicon-seq effector T cells T1D T1D_1 chip0420_530180 PBMC +2898 CASSLSGGAGGVSEQFF TRBV7-6*01 TRBJ2-1*01 HLA-A*02:01 B2M MHCI LLAGIGTVPI PGT HomoSapiens PMID:34811538 tetramer-sort yes amplicon-seq Naive T cells healthy healthy_1 chip0420_487563 PBMC +2899 CAVHALDKLIF TRAV8-1*01 TRAJ34*01 CASSEAFLADNEQFF TRBV6-4*01 TRBJ2-1*01 HLA-A*02:01 B2M MHCI YVLDHLIVV BRLF1 EBV PMID:34811538 tetramer-sort yes amplicon-seq effector memory T cells T1D T1D_1 chip0420_314113 PBMC +2900 CASSPPLGGQPQHF TRBV28*01 TRBJ1-5*01 HLA-A*02:01 B2M MHCI LLAGIGTVPI PGT HomoSapiens PMID:34811538 tetramer-sort yes amplicon-seq Naive T cells T1D T1D_1 chip0420_232473 PBMC +2902 CAASVLPGNTPLVF TRAV23/DV6*01 TRAJ29*01 CASSIGQTGELFF TRBV19*01 TRBJ2-2*01 HLA-A*02:01 B2M MHCI KIVALGINAV POL HCV PMID:34811538 tetramer-sort yes amplicon-seq effector memory T cells T1D T1D_2 chip0420_357768 PBMC +2903 CASSPHLGAAAEQYF TRBV19*01 TRBJ2-7*01 HLA-A*02:01 B2M MHCI YVLDHLIVV BRLF1 EBV PMID:34811538 tetramer-sort yes amplicon-seq effector memory T cells T1D T1D_1 chip0420_81475 PBMC +2904 CASSIAAWGTDNTGELFL TRBV19*01 TRBJ2-2*01 HLA-A*02:01 B2M MHCI GILGFVFTL M1 InfluenzaA PMID:34811538 tetramer-sort yes amplicon-seq transitional T cells between effector and memory populations T1D T1D_1 chip0420_821876 PBMC +2905 CASSYSAAGEQFF TRBV6-5*01 TRBJ2-1*01 HLA-A*02:01 B2M MHCI GILGFVFTL M1 InfluenzaA PMID:34811538 tetramer-sort yes amplicon-seq transitional T cells between effector and memory populations healthy healthy_1 chip0420_726040 PBMC +2908 CASSIRSSYEQYF TRBV19*01 TRBJ2-7*01 HLA-A*02:01 B2M MHCI GILGFVFTL M1 InfluenzaA PMID:34811538 tetramer-sort yes amplicon-seq effector T cells healthy healthy_1 chip0420_382020 PBMC +2910 CASSSDTSGSLYEQYF TRBV3-1*01 TRBJ2-7*01 HLA-A*02:01 B2M MHCI LLAGIGTVPI PGT HomoSapiens PMID:34811538 tetramer-sort yes amplicon-seq Naive T cells T1D T1D_1 chip0420_771018 PBMC +2911 CSVGSRGTNEKLFF TRBV29-1*01 TRBJ1-4*01 HLA-A*02:01 B2M MHCI GLCTLVAML BLMF1 EBV PMID:34811538 tetramer-sort yes amplicon-seq effector memory T cells T1D T1D_1 chip0420_721774 PBMC +2912 CSVGTGGTNEKLFF TRBV29-1*01 TRBJ1-4*01 HLA-A*02:01 B2M MHCI GLCTLVAML BLMF1 EBV PMID:34811538 tetramer-sort yes amplicon-seq effector T cells T1D T1D_2 chip0420_16355 PBMC +2913 CASRMGAGDTQYF TRBV10-2*01 TRBJ2-3*01 HLA-A*02:01 B2M MHCI GLCTLVAML BLMF1 EBV PMID:34811538 tetramer-sort yes amplicon-seq effector memory T cells T1D T1D_2 chip0420_504647 PBMC +2914 CASSPVSGSTYEQYF TRBV3-1*01 TRBJ2-7*01 HLA-A*02:01 B2M MHCI GLCTLVAML BLMF1 EBV PMID:34811538 tetramer-sort yes amplicon-seq effector memory T cells T1D T1D_1 chip0420_429737 PBMC +2915 CAVGAGGEt?tQGAQKLVF TRAV8-3*01 TRAJ54*01 HLA-A*02:01 B2M MHCI GLCTLVAML BLMF1 EBV PMID:34811538 tetramer-sort yes amplicon-seq effector T cells T1D T1D_2 chip0420_194329 PBMC +2917 CSVGTGGTNEKLFF TRBV29-1*01 TRBJ1-4*01 HLA-A*02:01 B2M MHCI GLCTLVAML BLMF1 EBV PMID:34811538 tetramer-sort yes amplicon-seq effector T cells T1D T1D_2 chip0420_11509 PBMC +2918 CAVDPWGNQFYF TRAV39*01 TRAJ49*01 CATQQGRDSQPQHF TRBV28*01 TRBJ1-5*01 HLA-A*02:01 B2M MHCI GLCTLVAML BLMF1 EBV PMID:34811538 tetramer-sort yes amplicon-seq effector T cells T1D T1D_1 chip0420_559598 PBMC +2919 CSVGSRGTNEKLFF TRBV29-1*01 TRBJ1-4*01 HLA-A*02:01 B2M MHCI GLCTLVAML BLMF1 EBV PMID:34811538 tetramer-sort yes amplicon-seq effector T cells T1D T1D_1 chip0420_369356 PBMC +2920 CVVNGRDSSYKLIF TRAV12-1*01 TRAJ12*01 CASSDGRVHPGTQYF TRBV2*01 TRBJ2-5*01 HLA-A*02:01 B2M MHCI GLCTLVAML BLMF1 EBV PMID:34811538 tetramer-sort yes amplicon-seq effector memory T cells T1D T1D_1 chip0420_264020 PBMC +2922 CAAYNFNKFYF TRAV8-1*01 TRAJ21*01 HLA-A*02:01 B2M MHCI YVLDHLIVV BRLF1 EBV PMID:34811538 tetramer-sort yes amplicon-seq effector T cells T1D T1D_2 chip0420_26806 PBMC +2924 CASSTGQLSNTGELFF TRBV9*01 TRBJ2-2*01 HLA-A*02:01 B2M MHCI GLCTLVAML BLMF1 EBV PMID:34811538 tetramer-sort yes amplicon-seq effector memory T cells T1D T1D_1 chip0420_597343 PBMC +2925 CADLECW??cNNRKLIW TRAV36/DV7*01 TRAJ38*01 CASSTGQLSNTGELFF TRBV9*01 TRBJ2-2*01 HLA-A*02:01 B2M MHCI GLCTLVAML BLMF1 EBV PMID:34811538 tetramer-sort yes amplicon-seq effector T cells T1D T1D_1 chip0420_111054 PBMC +2926 CVVNGRDSSYKLIF TRAV12-1*01 TRAJ12*01 CASSDGRVHPGTQYF TRBV2*01 TRBJ2-5*01 HLA-A*02:01 B2M MHCI GLCTLVAML BLMF1 EBV PMID:34811538 tetramer-sort yes amplicon-seq effector T cells T1D T1D_1 chip0420_16194 PBMC +2927 CAVNGGARLMF TRAV12-2*01 TRAJ31*01 CAARGGWADTGELFF TRBV6-1*01 TRBJ2-2*01 HLA-A*02:01 B2M MHCI LLAGIGTVPI PGT HomoSapiens PMID:34811538 tetramer-sort yes amplicon-seq Naive T cells T1D T1D_1 chip0420_499590 PBMC +2929 CASNVQGATYEQYF TRBV28*01 TRBJ2-7*01 HLA-A*02:01 B2M MHCI RGPGRAFVTI GP160 HIV-1 PMID:34811538 tetramer-sort yes amplicon-seq Naive T cells T1D T1D_1 chip0420_873743 PBMC +2930 CASSPSTSGSGETQYF TRBV3-1*01 TRBJ2-5*01 HLA-A*02:01 B2M MHCI YVLDHLIVV BRLF1 EBV PMID:34811538 tetramer-sort yes amplicon-seq effector T cells T1D T1D_2 chip0420_294761 PBMC +2933 CTESTSGGKLIF TRAV5*01 TRAJ23*01 CSVGTGGTNEKLFF TRBV29-1*01 TRBJ1-4*01 HLA-A*02:01 B2M MHCI GLCTLVAML BLMF1 EBV PMID:34811538 tetramer-sort yes amplicon-seq effector memory T cells T1D T1D_2 chip0420_841061 PBMC +2934 CALYNTDKLIF TRAV9-2*01 TRAJ34*01 HLA-A*02:01 B2M MHCI GLCTLVAML BLMF1 EBV PMID:34811538 tetramer-sort yes amplicon-seq effector T cells T1D T1D_1 chip0420_72187 PBMC +2936 CASSPVSGSTYEQYF TRBV3-1*01 TRBJ2-7*01 HLA-A*02:01 B2M MHCI GLCTLVAML BLMF1 EBV PMID:34811538 tetramer-sort yes amplicon-seq effector T cells T1D T1D_1 chip0420_582128 PBMC +2937 CASSTGQLSNTGELFF TRBV9*01 TRBJ2-2*01 HLA-A*02:01 B2M MHCI GLCTLVAML BLMF1 EBV PMID:34811538 tetramer-sort yes amplicon-seq effector memory T cells T1D T1D_1 chip0420_322550 PBMC +2938 CASSINGGRRDGYTF TRBV19*01 TRBJ1-2*01 HLA-A*02:01 B2M MHCI GILGFVFTL M1 InfluenzaA PMID:34811538 tetramer-sort yes amplicon-seq transitional T cells between effector and memory populations T1D T1D_1 chip0420_232699 PBMC +2939 CASRAGAGDTQYF TRBV10-2*01 TRBJ2-3*01 HLA-A*02:01 B2M MHCI GLCTLVAML BLMF1 EBV PMID:34811538 tetramer-sort yes amplicon-seq effector memory T cells T1D T1D_2 chip0420_589388 PBMC +2940 CASRAGAGDTQYF TRBV10-2*01 TRBJ2-3*01 HLA-A*02:01 B2M MHCI GLCTLVAML BLMF1 EBV PMID:34811538 tetramer-sort yes amplicon-seq effector T cells T1D T1D_2 chip0420_112964 PBMC +2942 CSVGTGGTNEKLFF TRBV29-1*01 TRBJ1-4*01 HLA-A*02:01 B2M MHCI GLCTLVAML BLMF1 EBV PMID:34811538 tetramer-sort yes amplicon-seq effector memory T cells T1D T1D_2 chip0420_3360 PBMC +2944 CGTEEPNDYKLSF TRAV30*01 TRAJ20*01 HLA-A*02:01 B2M MHCI GLCTLVAML BLMF1 EBV PMID:34811538 tetramer-sort yes amplicon-seq effector memory T cells T1D T1D_1 chip0420_661762 PBMC +2945 CASSMGAHGYTF TRBV19*01 TRBJ1-2*01 HLA-A*02:01 B2M MHCI GILGFVFTL M1 InfluenzaA PMID:34811538 tetramer-sort yes amplicon-seq transitional T cells between effector and memory populations T1D T1D_1 chip0420_115859 PBMC +2948 CVVDPARLMF TRAV12-1*01 TRAJ31*01 HLA-A*02:01 B2M MHCI LLAGIGTVPI PGT HomoSapiens PMID:34811538 tetramer-sort yes amplicon-seq Naive T cells T1D T1D_2 chip0420_747623 PBMC +2949 CASStg??caGAFF TRBV7-3*01 TRBJ1-1*01 HLA-A*02:01 B2M MHCI GLCTLVAML BLMF1 EBV PMID:34811538 tetramer-sort yes amplicon-seq effector memory T cells T1D T1D_1 chip0420_662594 PBMC +2950 CAPGGGGGRQGNLIF TRAV17*01 TRAJ42*01 CATSAVGVPTEAFF TRBV24-1*01 TRBJ1-1*01 HLA-A*02:01 B2M MHCI GILGFVFTL M1 InfluenzaA PMID:34811538 tetramer-sort yes amplicon-seq transitional T cells between effector and memory populations T1D T1D_1 chip0420_496664 PBMC +2951 CASSIFSGGADTQYF TRBV19*01 TRBJ2-3*01 HLA-A*02:01 B2M MHCI GILGFVFTL M1 InfluenzaA PMID:34811538 tetramer-sort yes amplicon-seq transitional T cells between effector and memory populations T1D T1D_1 chip0420_469457 PBMC +2952 CAVRRGGGADGLTF TRAV12-2*01 TRAJ45*01 HLA-A*02:01 B2M MHCI ALAGIGILTV MART1 HomoSapiens PMID:34811538 tetramer-sort yes amplicon-seq Naive T cells T1D T1D_2 chip0420_153283 PBMC +2954 CSVGTGGTNEKLFF TRBV29-1*01 TRBJ1-4*01 HLA-A*02:01 B2M MHCI GLCTLVAML BLMF1 EBV PMID:34811538 tetramer-sort yes amplicon-seq effector memory T cells T1D T1D_2 chip0420_248443 PBMC +2956 CVVISDEH??gEYGNKLVF TRAV10*01 TRAJ47*01 CASSGRSTDTQYF TRBV19*01 TRBJ2-3*01 HLA-A*02:01 B2M MHCI GILGFVFTL M1 InfluenzaA PMID:34811538 tetramer-sort yes amplicon-seq transitional T cells between effector and memory populations T1D T1D_1 chip0420_330011 PBMC +2957 CARRSRQVLPNEQFF TRBV2*01 TRBJ2-1*01 HLA-A*02:01 B2M MHCI GILGFVFTL M1 InfluenzaA PMID:34811538 tetramer-sort yes amplicon-seq transitional T cells between effector and memory populations T1D T1D_1 chip0420_425927 PBMC +2959 CALPLSNt?cGDEQFTF TRAV12-3*01 TRAJ48*01 CASSLASGEAADTQYF TRBV5-1*01 TRBJ2-3*01 HLA-A*02:01 B2M MHCI LLAGIGTVPI PGT HomoSapiens PMID:34811538 tetramer-sort yes amplicon-seq Naive T cells T1D T1D_1 chip0420_799620 PBMC +2961 CSVDQRTGQKKNYGYTF TRBV29-1*01 TRBJ1-2*01 HLA-A*02:01 B2M MHCI GLCTLVAML BLMF1 EBV PMID:34811538 tetramer-sort yes amplicon-seq effector memory T cells T1D T1D_2 chip0420_468461 PBMC +2963 CSARDGTGNGYTF TRBV20-1*01 TRBJ1-2*01 HLA-A*02:01 B2M MHCI GLCTLVAML BLMF1 EBV PMID:34811538 tetramer-sort yes amplicon-seq transitional T cells between effector and memory populations T1D T1D_1 chip0420_340543 PBMC +2964 CAMSFSNFGNEKLTF TRAV12-3*01 TRAJ48*01 CASSQDEQVVGNEQFF TRBV14*01 TRBJ2-1*01 HLA-A*02:01 B2M MHCI LLAGIGTVPI PGT HomoSapiens PMID:34811538 tetramer-sort yes amplicon-seq Naive T cells T1D T1D_1 chip0420_198565 PBMC +2967 CAGQLGGGSQGNLIF TRAV35*01 TRAJ42*01 HLA-A*02:01 B2M MHCI LAVDGVLSV ZNT8 HomoSapiens PMID:34811538 tetramer-sort yes amplicon-seq natural killer-like T cells T1D T1D_1 chip0420_124694 PBMC +2968 CASSPGDARGEQYF TRBV5-6*01 TRBJ2-7*01 HLA-A*02:01 B2M MHCI YLLEMLWRL LMP1 EBV PMID:34811538 tetramer-sort yes amplicon-seq central memory T cells T1D T1D_1 chip0420_395272 PBMC +2970 CSVGTGGTNEKLFF TRBV29-1*01 TRBJ1-4*01 HLA-A*02:01 B2M MHCI GLCTLVAML BLMF1 EBV PMID:34811538 tetramer-sort yes amplicon-seq effector memory T cells T1D T1D_2 chip0420_603915 PBMC +2972 CAMREDTGNFNKFYF TRAV14/DV4*01 TRAJ21*01 HLA-A*02:01 B2M MHCI YVLDHLIVV BRLF1 EBV PMID:34811538 tetramer-sort yes amplicon-seq effector T cells T1D T1D_2 chip0420_801028 PBMC +2974 CGPAEPNDYKLSF TRAV30*01 TRAJ20*01 CASSTGQLSNTGELFF TRBV9*01 TRBJ2-2*01 HLA-A*02:01 B2M MHCI GLCTLVAML BLMF1 EBV PMID:34811538 tetramer-sort yes amplicon-seq effector T cells T1D T1D_1 chip0420_835765 PBMC +2975 CASSPDQTSSYNEQFF TRBV27*01 TRBJ2-1*01 HLA-A*02:01 B2M MHCI YVLDHLIVV BRLF1 EBV PMID:34811538 tetramer-sort yes amplicon-seq effector T cells T1D T1D_1 chip0420_587039 PBMC +2976 CAWSDQLGAARELFL TRBV30*01 TRBJ2-2*01 HLA-A*02:01 B2M MHCI YVLDHLIVV BRLF1 EBV PMID:34811538 tetramer-sort yes amplicon-seq effector memory T cells T1D T1D_2 chip0420_552145 PBMC +2977 CASSQSPGGTQYF TRBV14*01 TRBJ2-3*01 HLA-A*02:01 B2M MHCI GLCTLVAML BLMF1 EBV PMID:34811538 tetramer-sort yes amplicon-seq effector memory T cells T1D T1D_1 chip0420_126877 PBMC +2978 CSVCILAQNYNEQFF TRBV29-1*01 TRBJ2-1*01 HLA-A*02:01 B2M MHCI LLAGIGTVPI PGT HomoSapiens PMID:34811538 tetramer-sort yes amplicon-seq effector memory T cells T1D T1D_2 chip0420_687573 PBMC +2979 CSVDQRTWQKKNYGYTF TRBV29-1*01 TRBJ1-2*01 HLA-A*02:01 B2M MHCI GLCTLVAML BLMF1 EBV PMID:34811538 tetramer-sort yes amplicon-seq effector memory T cells T1D T1D_2 chip0420_548462 PBMC +2980 CVVNGRDSSYKLIF TRAV12-1*01 TRAJ12*01 CASSSGLVAPGELFF TRBV2*01 TRBJ2-2*01 HLA-A*02:01 B2M MHCI GLCTLVAML BLMF1 EBV PMID:34811538 tetramer-sort yes amplicon-seq effector T cells T1D T1D_2 chip0420_208865 PBMC +2981 CASSSPRDYANEQFF TRBV7-9*01 TRBJ2-1*01 HLA-A*02:01 B2M MHCI LLAGIGTVPI PGT HomoSapiens PMID:34811538 tetramer-sort yes amplicon-seq transitional T cells between effector and memory populations T1D T1D_1 chip0420_101586 PBMC +2982 CAATFFCTTSRAYKYIF TRAV29/DV5*01 TRAJ40*01 HLA-A*02:01 B2M MHCI LLSLFSLWL ZNT8 HomoSapiens PMID:34811538 tetramer-sort yes amplicon-seq Naive T cells T1D T1D_1 chip0420_587468 PBMC +2983 CASSVRAGETQYF TRBV19*01 TRBJ2-5*01 HLA-A*02:01 B2M MHCI GILGFVFTL M1 InfluenzaA PMID:34811538 tetramer-sort yes amplicon-seq transitional T cells between effector and memory populations T1D T1D_1 chip0420_384748 PBMC +2985 CASSSGQVLPNEQFF TRBV2*01 TRBJ2-1*01 HLA-A*02:01 B2M MHCI GLCTLVAML BLMF1 EBV PMID:34811538 tetramer-sort yes amplicon-seq effector memory T cells T1D T1D_1 chip0420_183182 PBMC +2986 CASSQGAYGSTF TRBV19*01 TRBJ1-2*01 HLA-A*02:01 B2M MHCI GILGFVFTL M1 InfluenzaA PMID:34811538 tetramer-sort yes amplicon-seq transitional T cells between effector and memory populations T1D T1D_1 chip0420_136301 PBMC +2987 CTSLTPGASKIIF TRAV8-6*01 TRAJ3*01 CASSSGLVAPGELFF TRBV2*01 TRBJ2-2*01 HLA-A*02:01 B2M MHCI GLCTLVAML BLMF1 EBV PMID:34811538 tetramer-sort yes amplicon-seq effector memory T cells T1D T1D_2 chip0420_228086 PBMC +2988 CASSGGQGKQFF TRBV2*01 TRBJ2-1*01 HLA-A*02:01 B2M MHCI LLAGIGTVPI PGT HomoSapiens PMID:34811538 tetramer-sort yes amplicon-seq Naive T cells T1D T1D_1 chip0420_471077 PBMC +2990 CATQQGRDSQPQHF TRBV28*01 TRBJ1-5*01 HLA-A*02:01 B2M MHCI GLCTLVAML BLMF1 EBV PMID:34811538 tetramer-sort yes amplicon-seq effector memory T cells T1D T1D_1 chip0420_625781 PBMC +2991 CAGASNTGKLIF TRAV27*01 TRAJ37*01 HLA-A*02:01 B2M MHCI GILGFVFTL M1 InfluenzaA PMID:34811538 tetramer-sort yes amplicon-seq central memory T cells T1D T1D_1 chip0420_802528 PBMC +2992 CASSLEALSSYNEQFF TRBV7-2*01 TRBJ2-1*01 HLA-A*02:01 B2M MHCI ALAGIGILTV MART1 HomoSapiens PMID:34811538 tetramer-sort yes amplicon-seq Naive T cells T1D T1D_1 chip0420_571883 PBMC +2993 CSVGTGGTNEKLFF TRBV29-1*01 TRBJ1-4*01 HLA-A*02:01 B2M MHCI GLCTLVAML BLMF1 EBV PMID:34811538 tetramer-sort yes amplicon-seq effector memory T cells T1D T1D_2 chip0420_54090 PBMC +2996 CAGGGSQGNLIF TRAV27*01 TRAJ42*01 CASSIRSAYEQYF TRBV19*01 TRBJ2-7*01 HLA-A*02:01 B2M MHCI GILGFVFTL M1 InfluenzaA PMID:34811538 tetramer-sort yes amplicon-seq transitional T cells between effector and memory populations T1D T1D_1 chip0420_531777 PBMC +2998 CATQQERDSQPQHF TRBV28*01 TRBJ1-5*01 HLA-A*02:01 B2M MHCI GLCTLVAML BLMF1 EBV PMID:34811538 tetramer-sort yes amplicon-seq effector T cells T1D T1D_1 chip0420_347046 PBMC +2999 CASSGGAVAPSEQFF TRBV2*01 TRBJ2-1*01 HLA-A*02:01 B2M MHCI GLCTLVAML BLMF1 EBV PMID:34811538 tetramer-sort yes amplicon-seq effector memory T cells T1D T1D_2 chip0420_19277 PBMC +3000 CSVGTGGTNEKLFF TRBV29-1*01 TRBJ1-4*01 HLA-A*02:01 B2M MHCI GLCTLVAML BLMF1 EBV PMID:34811538 tetramer-sort yes amplicon-seq effector memory T cells T1D T1D_2 chip0420_385329 PBMC +3002 CSVGTGGTNEKLFF TRBV29-1*01 TRBJ1-4*01 HLA-A*02:01 B2M MHCI GLCTLVAML BLMF1 EBV PMID:34811538 tetramer-sort yes amplicon-seq effector memory T cells T1D T1D_2 chip0420_234699 PBMC +3004 CSVGTGGTNEKLFF TRBV29-1*01 TRBJ1-4*01 HLA-A*02:01 B2M MHCI GLCTLVAML BLMF1 EBV PMID:34811538 tetramer-sort yes amplicon-seq effector memory T cells T1D T1D_2 chip0420_548374 PBMC +3005 CASSEYDGGYNEQFF TRBV10-1*01 TRBJ2-1*01 HLA-A*02:01 B2M MHCI FLGKIWPSYK GAG HIV-1 PMID:34811538 tetramer-sort yes amplicon-seq Naive T cells T1D T1D_1 chip0420_81614 PBMC +3008 CSVDQRTGQKKNYGYTF TRBV29-1*01 TRBJ1-2*01 HLA-A*02:01 B2M MHCI GLCTLVAML BLMF1 EBV PMID:34811538 tetramer-sort yes amplicon-seq effector memory T cells T1D T1D_2 chip0420_630000 PBMC +3009 CASSEWTGYLPQHF TRBV6-1*01 TRBJ1-5*01 HLA-A*02:01 B2M MHCI GLCTLVAML BLMF1 EBV PMID:34811538 tetramer-sort yes amplicon-seq effector memory T cells T1D T1D_2 chip0420_426247 PBMC +3010 CAASCLag??gaNTPLVF TRAV13-1*01 TRAJ29*01 HLA-B*08:01 B2M MHCI WMRLLPLLAL INS HomoSapiens PMID:34811538 tetramer-sort yes amplicon-seq Naive T cells T1D T1D_3 chip0420_91009 PBMC +3012 CASSSGGNVDTQYF TRBV7-3*01 TRBJ2-3*01 HLA-A*02:01 B2M MHCI GLCTLVAML BLMF1 EBV PMID:34811538 tetramer-sort yes amplicon-seq effector memory T cells T1D T1D_1 chip0420_425298 PBMC +3013 CSVGSRGTNEKLFF TRBV29-1*01 TRBJ1-4*01 HLA-A*02:01 B2M MHCI GLCTLVAML BLMF1 EBV PMID:34811538 tetramer-sort yes amplicon-seq effector memory T cells T1D T1D_1 chip0420_844551 PBMC +3014 CASEGQQRDEQLF TRBV7-9*01 TRBJ2-1*01 HLA-A*01:01 B2M MHCI CTELKLSDY NP InfluenzaA PMID:34811538 tetramer-sort yes amplicon-seq transitional T cells between effector and memory populations healthy healthy_2 chip0420_675732 PBMC +3015 CAVNSGYALNF TRAV3*01 TRAJ41*01 HLA-A*02:01 B2M MHCI LLFNILGGWV NS4B HCV PMID:34811538 tetramer-sort yes amplicon-seq transitional T cells between effector and memory populations T1D T1D_1 chip0420_561320 PBMC +3017 CVVNGRDSSYKLIF TRAV12-1*01 TRAJ12*01 CASSSGLVAPGELFF TRBV2*01 TRBJ2-2*01 HLA-A*02:01 B2M MHCI GLCTLVAML BLMF1 EBV PMID:34811538 tetramer-sort yes amplicon-seq effector memory T cells T1D T1D_2 chip0420_511159 PBMC +3018 CASSPVSGSTYEQYF TRBV3-1*01 TRBJ2-7*01 HLA-A*02:01 B2M MHCI GLCTLVAML BLMF1 EBV PMID:34811538 tetramer-sort yes amplicon-seq effector T cells T1D T1D_1 chip0420_392409 PBMC +3019 CAVKGYDKIIF TRAV8-1*01 TRAJ30*01 CASSPDRTSSYNEQFF TRBV27*01 TRBJ2-1*01 HLA-A*02:01 B2M MHCI YVLDHLIVV BRLF1 EBV PMID:34811538 tetramer-sort yes amplicon-seq effector T cells T1D T1D_1 chip0420_142768 PBMC +3020 YSARVTGGPYEQYF TRBV20-1*01 TRBJ2-7*01 HLA-A*01:01 B2M MHCI LTSLTILQLY G6PC2 HomoSapiens PMID:34811538 tetramer-sort yes amplicon-seq Naive T cells T1D T1D_3 chip0420_395390 PBMC +3021 CSVGGSFYGYTF TRBV29-1*01 TRBJ1-2*01 HLA-A*02:01 B2M MHCI GLCTLVAML BLMF1 EBV PMID:34811538 tetramer-sort yes amplicon-seq effector memory T cells T1D T1D_2 chip0420_117412 PBMC +3022 CAAYAGNMLTF TRAV29/DV5*01 TRAJ39*01 HLA-A*02:01 B2M MHCI GLCTLVAML BLMF1 EBV PMID:34811538 tetramer-sort yes amplicon-seq effector memory T cells T1D T1D_2 chip0420_78635 PBMC +3023 CASSLEGQASSYEQYF TRBV5-1*01 TRBJ2-7*01 HLA-A*02:01 B2M MHCI CLGGLLTMV LMP2A EBV PMID:34811538 tetramer-sort yes amplicon-seq transitional T cells between effector and memory populations T1D T1D_2 chip0420_500581 PBMC +3025 CAMAGHSGSSPLTL TRAV17*01 TRAJ11*01 CASSRQGGKDGYTF TRBV6-1*01 TRBJ1-2*01 HLA-A*02:01 B2M MHCI FLYALALLL LMP2 EBV PMID:34811538 tetramer-sort yes amplicon-seq effector memory T cells T1D T1D_2 chip0420_269518 PBMC +3027 CASSTGQLSNTGELFF TRBV9*01 TRBJ2-2*01 HLA-A*02:01 B2M MHCI GLCTLVAML BLMF1 EBV PMID:34811538 tetramer-sort yes amplicon-seq effector memory T cells T1D T1D_1 chip0420_760331 PBMC +3028 CGTEEPNDYKLSF TRAV30*01 TRAJ20*01 CARRTGQLSNTGELFF TRBV9*01 TRBJ2-2*01 HLA-A*02:01 B2M MHCI GLCTLVAML BLMF1 EBV PMID:34811538 tetramer-sort yes amplicon-seq effector memory T cells T1D T1D_1 chip0420_450490 PBMC +3029 CASSGRTRI??aRAAANVVTF TRBV9*01 TRBJ2-6*01 HLA-A*02:01 B2M MHCI YLLLRVLNI IGRP HomoSapiens PMID:34811538 tetramer-sort yes amplicon-seq Naive T cells T1D T1D_1 chip0420_852699 PBMC +3034 CSVGSRGTNEKLFF TRBV29-1*01 TRBJ1-4*01 HLA-A*02:01 B2M MHCI GLCTLVAML BLMF1 EBV PMID:34811538 tetramer-sort yes amplicon-seq effector T cells T1D T1D_1 chip0420_877064 PBMC +3035 CASSLFGIYEQYF TRBV5-6*01 TRBJ2-7*01 HLA-A*02:01 B2M MHCI LLAGIGTVPI PGT HomoSapiens PMID:34811538 tetramer-sort yes amplicon-seq Naive T cells T1D T1D_1 chip0420_325303 PBMC +3036 CASSMGAHGYTF TRBV19*01 TRBJ1-2*01 HLA-A*02:01 B2M MHCI GILGFVFTL M1 InfluenzaA PMID:34811538 tetramer-sort yes amplicon-seq transitional T cells between effector and memory populations T1D T1D_1 chip0420_175434 PBMC +3037 CASRAGAGDTQYF TRBV10-2*01 TRBJ2-3*01 HLA-A*02:01 B2M MHCI GLCTLVAML BLMF1 EBV PMID:34811538 tetramer-sort yes amplicon-seq effector memory T cells T1D T1D_2 chip0420_51304 PBMC +3040 CALGGLTF TRAV8-1*01 TRAJ22*01 CASRAGAGDTQYF TRBV10-2*01 TRBJ2-3*01 HLA-A*02:01 B2M MHCI GLCTLVAML BLMF1 EBV PMID:34811538 tetramer-sort yes amplicon-seq effector T cells T1D T1D_2 chip0420_690201 PBMC +3041 CASSDGRVHPGTQYF TRBV2*01 TRBJ2-5*01 HLA-A*02:01 B2M MHCI GLCTLVAML BLMF1 EBV PMID:34811538 tetramer-sort yes amplicon-seq effector memory T cells T1D T1D_1 chip0420_108359 PBMC +3042 CASSIGSGEQFF TRBV19*01 TRBJ2-1*01 HLA-A*02:01 B2M MHCI GILGFVFTL M1 InfluenzaA PMID:34811538 tetramer-sort yes amplicon-seq transitional T cells between effector and memory populations T1D T1D_1 chip0420_219905 PBMC +3044 CASSPDQTSSYNEQFF TRBV27*01 TRBJ2-1*01 HLA-A*02:01 B2M MHCI YVLDHLIVV BRLF1 EBV PMID:34811538 tetramer-sort yes amplicon-seq effector T cells T1D T1D_1 chip0420_544919 PBMC +3046 CAANEYGNKLVF TRAV29/DV5*01 TRAJ47*01 CASSSTSGTGSYNEQFF TRBV27*01 TRBJ2-1*01 HLA-A*02:01 B2M MHCI RGPGRAFVTI GP160 HIV-1 PMID:34811538 tetramer-sort yes amplicon-seq Naive T cells T1D T1D_1 chip0420_92724 PBMC +3047 CSVGTPPTNEKLFF TRBV29-1*01 TRBJ1-4*01 HLA-A*02:01 B2M MHCI GLCTLVAML BLMF1 EBV PMID:34811538 tetramer-sort yes amplicon-seq transitional T cells between effector and memory populations T1D T1D_2 chip0420_46875 PBMC +3049 RARRLV*DKVGAFF TRBV7-4*01 TRBJ1-1*01 HLA-A*02:01 B2M MHCI YVLDHLIVV BRLF1 EBV PMID:34811538 tetramer-sort yes amplicon-seq effector memory T cells T1D T1D_2 chip0420_32654 PBMC +3050 CASSQSPGGTQYF TRBV14*01 TRBJ2-3*01 HLA-A*02:01 B2M MHCI GLCTLVAML BLMF1 EBV PMID:34811538 tetramer-sort yes amplicon-seq effector T cells T1D T1D_1 chip0420_809374 PBMC +3052 CGPEEPNDYKLSF TRAV30*01 TRAJ20*01 CASSFLGTGLNEQYF TRBV28*01 TRBJ2-7*01 HLA-A*02:01 B2M MHCI GLCTLVAML BLMF1 EBV PMID:34811538 tetramer-sort yes amplicon-seq effector T cells T1D T1D_1 chip0420_183556 PBMC +3053 CAMSISNFGNEKLTF TRAV12-3*01 TRAJ48*01 HLA-A*02:01 B2M MHCI LLAGIGTVPI PGT HomoSapiens PMID:34811538 tetramer-sort yes amplicon-seq Naive T cells T1D T1D_1 chip0420_71981 PBMC +3055 CSVGTGGTNEKLFF TRBV29-1*01 TRBJ1-4*01 HLA-A*02:01 B2M MHCI GLCTLVAML BLMF1 EBV PMID:34811538 tetramer-sort yes amplicon-seq effector memory T cells T1D T1D_2 chip0420_387805 PBMC +3056 CASSYSISPDTQYF TRBV6-2*01,TRBV6-3*01 TRBJ2-3*01 HLA-A*02:01 B2M MHCI ALAGIGILTV MART1 HomoSapiens PMID:34811538 tetramer-sort yes amplicon-seq Naive T cells T1D T1D_2 chip0420_573059 PBMC +3057 CASSLSVLSYNEQFF TRBV27*01 TRBJ2-1*01 HLA-A*02:01 B2M MHCI YVLDHLIVV BRLF1 EBV PMID:34811538 tetramer-sort yes amplicon-seq effector memory T cells T1D T1D_2 chip0420_315019 PBMC +3058 RASSPVSGSTYEQYF TRBV3-1*01 TRBJ2-7*01 HLA-A*02:01 B2M MHCI GLCTLVAML BLMF1 EBV PMID:34811538 tetramer-sort yes amplicon-seq effector memory T cells T1D T1D_1 chip0420_260869 PBMC +3061 CASGTEAFF TRBV6-1*01 TRBJ1-1*01 HLA-A*02:01 B2M MHCI GLCTLVAML BLMF1 EBV PMID:34811538 tetramer-sort yes amplicon-seq effector T cells T1D T1D_1 chip0420_521047 PBMC +3062 CASSPDQTSSYNEQFF TRBV27*01 TRBJ2-1*01 HLA-A*02:01 B2M MHCI YVLDHLIVV BRLF1 EBV PMID:34811538 tetramer-sort yes amplicon-seq effector memory T cells T1D T1D_1 chip0420_192651 PBMC +3064 CASSTGQLSNTGELFF TRBV9*01 TRBJ2-2*01 HLA-A*02:01 B2M MHCI GLCTLVAML BLMF1 EBV PMID:34811538 tetramer-sort yes amplicon-seq effector T cells T1D T1D_1 chip0420_696177 PBMC +3065 CAGSGAGSYQLTF TRAV25*01 TRAJ28*01 CASSLEGQASSYEQYF TRBV5-1*01 TRBJ2-7*01 HLA-A*02:01 B2M MHCI CLGGLLTMV LMP2A EBV PMID:34811538 tetramer-sort yes amplicon-seq effector memory T cells T1D T1D_2 chip0420_160613 PBMC +3066 CAVKDTDKLIF TRAV8-1*01 TRAJ34*01 HLA-A*02:01 B2M MHCI YVLDHLIVV BRLF1 EBV PMID:34811538 tetramer-sort yes amplicon-seq effector T cells T1D T1D_2 chip0420_556480 PBMC +3067 CSARDRGLYEQYF TRBV20-1*01 TRBJ2-7*01 HLA-A*02:01 B2M MHCI LLAGIGTVPI PGT HomoSapiens PMID:34811538 tetramer-sort yes amplicon-seq Naive T cells T1D T1D_1 chip0420_884076 PBMC +3071 CALSEADTGRRALTF TRAV19*01 TRAJ5*01 CASSSGLVAPGELFF TRBV2*01 TRBJ2-2*01 HLA-A*02:01 B2M MHCI RGPGRAFVTI GP160 HIV-1 PMID:34811538 tetramer-sort yes amplicon-seq Naive T cells T1D T1D_1 chip0420_278423 PBMC +3072 CASSIYGGSGEAFF TRBV19*01 TRBJ1-1*01 HLA-A*02:01 B2M MHCI GILGFVFTL M1 InfluenzaA PMID:34811538 tetramer-sort yes amplicon-seq transitional T cells between effector and memory populations T1D T1D_1 chip0420_25165 PBMC +3074 CASSPVSGSTYEQYF TRBV3-1*01 TRBJ2-7*01 HLA-A*02:01 B2M MHCI GLCTLVAML BLMF1 EBV PMID:34811538 tetramer-sort yes amplicon-seq effector memory T cells T1D T1D_1 chip0420_356028 PBMC +3075 CILRRYGGSQGNLIF TRAV26-2*01 TRAJ42*01 HLA-A*02:01 B2M MHCI GLCTLVAML BLMF1 EBV PMID:34811538 tetramer-sort yes amplicon-seq effector T cells T1D T1D_1 chip0420_317680 PBMC +3077 CASSSGLVAPGELFF TRBV2*01 TRBJ2-2*01 HLA-A*02:01 B2M MHCI GLCTLVAML BLMF1 EBV PMID:34811538 tetramer-sort yes amplicon-seq effector memory T cells T1D T1D_2 chip0420_273856 PBMC +3079 CATQQGRASQPQHF TRBV28*01 TRBJ1-5*01 HLA-A*02:01 B2M MHCI GLCTLVAML BLMF1 EBV PMID:34811538 tetramer-sort yes amplicon-seq effector T cells T1D T1D_1 chip0420_293490 PBMC +3080 CAVTLTgc?SASQIIF TRAV8-4*01 TRAJ3*01 CASSLQGALNNEQFF TRBV12-3*01,TRBV12-4*01 TRBJ2-1*01 HLA-A*02:01 B2M MHCI LAVDGVLSV ZNT8 HomoSapiens PMID:34811538 tetramer-sort yes amplicon-seq Naive T cells T1D T1D_1 chip0420_686846 PBMC +3082 CSAADQTYNEQFF TRBV20-1*01 TRBJ2-1*01 HLA-A*02:01 B2M MHCI YVLDHLIVV BRLF1 EBV PMID:34811538 tetramer-sort yes amplicon-seq effector memory T cells T1D T1D_1 chip0420_761516 PBMC +3083 CASSGSSYEQYF TRBV19*01 TRBJ2-7*01 HLA-A*02:01 B2M MHCI VLFGLGFAI IGRP HomoSapiens PMID:34811538 tetramer-sort yes amplicon-seq Naive T cells T1D T1D_1 chip0420_416691 PBMC +3084 CASSTQAGGGEAFF TRBV9*01 TRBJ1-1*01 HLA-A*02:01 B2M MHCI SLVALGINAV POL HCV PMID:34811538 tetramer-sort yes amplicon-seq Naive T cells T1D T1D_1 chip0420_41906 PBMC +3085 CAEAANQAGTALVF TRAV5*01 TRAJ15*01 CASSQSPGGTQYF TRBV14*01 TRBJ2-3*01 HLA-A*02:01 B2M MHCI GLCTLVAML BLMF1 EBV PMID:34811538 tetramer-sort yes amplicon-seq effector T cells T1D T1D_1 chip0420_881948 PBMC +3086 CATFPDGSYEQYF TRBV28*01 TRBJ2-7*01 HLA-A*02:01 B2M MHCI YLLEMLWRL LMP1 EBV PMID:34811538 tetramer-sort yes amplicon-seq effector memory T cells T1D T1D_1 chip0420_776470 PBMC +3087 CAVKGYDKIIV TRAV8-1*01 TRAJ30*01 HLA-A*02:01 B2M MHCI YVLDHLIVV BRLF1 EBV PMID:34811538 tetramer-sort yes amplicon-seq effector memory T cells T1D T1D_1 chip0420_531986 PBMC +3088 CAWLVGPSYNEQFF TRBV30*01 TRBJ2-1*01 HLA-A*02:01 B2M MHCI YVLDHLIVV BRLF1 EBV PMID:34811538 tetramer-sort yes amplicon-seq effector memory T cells T1D T1D_2 chip0420_379170 PBMC +3090 CSIEDSTYEQYF TRBV29-1*01 TRBJ2-7*01 HLA-A*02:01 B2M MHCI FLYALALLL LMP2 EBV PMID:34811538 tetramer-sort yes amplicon-seq effector memory T cells T1D T1D_1 chip0420_248404 PBMC +3092 CASSSGGNVDTQYF TRBV7-3*01 TRBJ2-3*01 HLA-A*02:01 B2M MHCI GLCTLVAML BLMF1 EBV PMID:34811538 tetramer-sort yes amplicon-seq effector memory T cells T1D T1D_1 chip0420_49423 PBMC +3095 CASSPTGDEQYF TRBV27*01 TRBJ2-7*01 HLA-A*02:01 B2M MHCI ALWMRLLPL PREINS HomoSapiens PMID:34811538 tetramer-sort yes amplicon-seq Naive T cells healthy healthy_1 chip0420_454143 PBMC +3098 CAVRDNLFTGFQKLVF TRAV3*01 TRAJ8*01 CASRRDGTEAFF TRBV30*01 TRBJ1-1*01 HLA-A*02:01 B2M MHCI GIIYIIYKL P3A CoxsackievirusB PMID:34811538 tetramer-sort yes amplicon-seq central memory T cells T1D T1D_1 chip0420_284335 PBMC +3099 CGVGSGGTNAKLFF TRBV29-1*01 TRBJ1-4*01 HLA-A*02:01 B2M MHCI GLCTLVAML BLMF1 EBV PMID:34811538 tetramer-sort yes amplicon-seq effector memory T cells T1D T1D_2 chip0420_73664 PBMC +3100 CAVKDTDTLIF TRAV8-1*01 TRAJ34*01 CATSDWLDGDTQYF TRBV24-1*01 TRBJ2-3*01 HLA-A*02:01 B2M MHCI YVLDHLIVV BRLF1 EBV PMID:34811538 tetramer-sort yes amplicon-seq effector memory T cells T1D T1D_2 chip0420_518250 PBMC +3101 CGPEEPNDYKLSF TRAV30*01 TRAJ20*01 HLA-A*02:01 B2M MHCI GLCTLVAML BLMF1 EBV PMID:34811538 tetramer-sort yes amplicon-seq effector memory T cells T1D T1D_1 chip0420_11304 PBMC +3102 CASRFTESGANVLTF TRBV2*01 TRBJ2-6*01 HLA-A*01:01 B2M MHCI STNVGSNTY IAPP HomoSapiens PMID:34811538 tetramer-sort yes amplicon-seq transitional T cells between effector and memory populations tet_neg chip0420_674233 PBMC +3104 CASSEDTLLNEQYF TRBV2*01 TRBJ2-7*01 HLA-A*02:01 B2M MHCI YVLDHLIVV BRLF1 EBV PMID:34811538 tetramer-sort yes amplicon-seq effector T cells T1D T1D_1 chip0420_167049 PBMC +3105 CASRGLTGGGSEAFF TRBV28*01 TRBJ1-1*01 HLA-A*02:01 B2M MHCI YVLDHLIVV BRLF1 EBV PMID:34811538 tetramer-sort yes amplicon-seq effector T cells T1D T1D_1 chip0420_790287 PBMC +3106 CVVNGRDSSYKLIF TRAV12-1*01 TRAJ12*01 CASSSGLVAPGELFF TRBV2*01 TRBJ2-2*01 HLA-A*02:01 B2M MHCI GLCTLVAML BLMF1 EBV PMID:34811538 tetramer-sort yes amplicon-seq effector memory T cells T1D T1D_2 chip0420_580486 PBMC +3109 CSVGSRGTNEKLFF TRBV29-1*01 TRBJ1-4*01 HLA-A*02:01 B2M MHCI GLCTLVAML BLMF1 EBV PMID:34811538 tetramer-sort yes amplicon-seq effector memory T cells T1D T1D_1 chip0420_555891 PBMC +3110 CMVNGGDSSYKLIF TRAV12-1*01 TRAJ12*01 CTSSSGQVLPNEQFF TRBV2*01 TRBJ2-1*01 HLA-A*02:01 B2M MHCI GLCTLVAML BLMF1 EBV PMID:34811538 tetramer-sort yes amplicon-seq effector memory T cells T1D T1D_1 chip0420_530990 PBMC +3111 CAWRDSGEQFF TRBV30*01 TRBJ2-1*01 HLA-A*02:01 B2M MHCI YLLPGWKL VP3 RotavirusA PMID:34811538 tetramer-sort yes amplicon-seq Naive T cells T1D T1D_1 chip0420_375889 PBMC +3113 CAESTSGGKLIF TRAV5*01 TRAJ23*01 CSVGTGGTNEKLFF TRBV29-1*01 TRBJ1-4*01 HLA-A*02:01 B2M MHCI GLCTLVAML BLMF1 EBV PMID:34811538 tetramer-sort yes amplicon-seq effector memory T cells T1D T1D_2 chip0420_65027 PBMC +3115 CSVGGSFYGYTF TRBV29-1*01 TRBJ1-2*01 HLA-A*02:01 B2M MHCI GLCTLVAML BLMF1 EBV PMID:34811538 tetramer-sort yes amplicon-seq effector memory T cells T1D T1D_2 chip0420_705390 PBMC +3116 CSVGTGGTNEKLFF TRBV29-1*01 TRBJ1-4*01 HLA-A*02:01 B2M MHCI GLCTLVAML BLMF1 EBV PMID:34811538 tetramer-sort yes amplicon-seq effector memory T cells T1D T1D_2 chip0420_584839 PBMC +3118 CAETTPSGPSKYIF TRAV13-2*01 TRAJ40*01 CASSAQAGQGAYLNTEAFF TRBV25-1*01 TRBJ1-1*01 HLA-A*02:01 B2M MHCI FLQDVMNIL GAD65 HomoSapiens PMID:34811538 tetramer-sort yes amplicon-seq Naive T cells T1D T1D_1 chip0420_537378 PBMC +3119 CASSARSQETQYF TRBV19*01 TRBJ2-5*01 HLA-A*02:01 B2M MHCI GILGFVFTL M1 InfluenzaA PMID:34811538 tetramer-sort yes amplicon-seq transitional T cells between effector and memory populations T1D T1D_1 chip0420_163561 PBMC +3121 CGTAGNSE*STLTF TRAV17*01 TRAJ11*01 HLA-A*02:01 B2M MHCI FLYALALLL LMP2 EBV PMID:34811538 tetramer-sort yes amplicon-seq transitional T cells between effector and memory populations T1D T1D_2 chip0420_609355 PBMC +3122 CASSVRAGETQYF TRBV19*01 TRBJ2-5*01 HLA-A*02:01 B2M MHCI GILGFVFTL M1 InfluenzaA PMID:34811538 tetramer-sort yes amplicon-seq transitional T cells between effector and memory populations T1D T1D_1 chip0420_453576 PBMC +3123 CASSPVSGSTYEQYF TRBV3-1*01 TRBJ2-7*01 HLA-A*02:01 B2M MHCI GLCTLVAML BLMF1 EBV PMID:34811538 tetramer-sort yes amplicon-seq effector memory T cells T1D T1D_1 chip0420_813359 PBMC +3124 CGTEEPNDYKLSF TRAV30*01 TRAJ20*01 HLA-A*02:01 B2M MHCI GLCTLVAML BLMF1 EBV PMID:34811538 tetramer-sort yes amplicon-seq effector memory T cells T1D T1D_1 chip0420_405081 PBMC +3126 CAEAANQAGTALIF TRAV5*01 TRAJ15*01 CASSQSPGGTQYF TRBV14*01 TRBJ2-3*01 HLA-A*02:01 B2M MHCI GLCTLVAML BLMF1 EBV PMID:34811538 tetramer-sort yes amplicon-seq effector T cells T1D T1D_1 chip0420_72906 PBMC +3127 CASSYRDKSAGNTIYF TRBV28*01 TRBJ1-3*01 HLA-A*02:01 B2M MHCI GILGFVFTL M1 InfluenzaA PMID:34811538 tetramer-sort yes amplicon-seq transitional T cells between effector and memory populations T1D T1D_1 chip0420_838808 PBMC +3128 CASSHLLGTGFGYTF TRBV3-1*01 TRBJ1-2*01 HLA-A*02:01 B2M MHCI YVLDHLIVV BRLF1 EBV PMID:34811538 tetramer-sort yes amplicon-seq effector memory T cells T1D T1D_1 chip0420_398686 PBMC +3129 CAMSASNFGNEKLTF TRAV12-3*01 TRAJ48*01 YASSPKRNEQFF TRBV5-6*01 TRBJ2-1*01 HLA-A*02:01 B2M MHCI LLAGIGTVPI PGT HomoSapiens PMID:34811538 tetramer-sort yes amplicon-seq Naive T cells T1D T1D_2 chip0420_56166 PBMC +3130 CASSVRAGETQYF TRBV19*01 TRBJ2-5*01 HLA-A*02:01 B2M MHCI GILGFVFTL M1 InfluenzaA PMID:34811538 tetramer-sort yes amplicon-seq transitional T cells between effector and memory populations T1D T1D_1 chip0420_851883 PBMC +3132 CASSEDGMNTEAFF TRBV10-2*01 TRBJ1-1*01 HLA-A*02:01 B2M MHCI CLGGLLTMV LMP2A EBV PMID:34811538 tetramer-sort yes amplicon-seq central memory T cells T1D T1D_2 chip0420_31270 PBMC +3133 RSVGSRGTNEKLFF TRBV29-1*01 TRBJ1-4*01 HLA-A*02:01 B2M MHCI GLCTLVAML BLMF1 EBV PMID:34811538 tetramer-sort yes amplicon-seq effector T cells T1D T1D_1 chip0420_317432 PBMC +3135 CASSEWTGYQPQHF TRBV6-1*01 TRBJ1-5*01 HLA-A*02:01 B2M MHCI GLCTLVAML BLMF1 EBV PMID:34811538 tetramer-sort yes amplicon-seq effector memory T cells T1D T1D_2 chip0420_499576 PBMC +3137 CASSLNAGEWYGYTF TRBV11-2*01 TRBJ1-2*01 HLA-A*02:01 B2M MHCI GLCTLVAML BLMF1 EBV PMID:34811538 tetramer-sort yes amplicon-seq effector memory T cells T1D T1D_2 chip0420_358635 PBMC +3138 CAVKDTDKLIF TRAV8-1*01 TRAJ34*01 CASSLPGLNYGYTF TRBV19*01 TRBJ1-2*01 HLA-A*02:01 B2M MHCI YVLDHLIVV BRLF1 EBV PMID:34811538 tetramer-sort yes amplicon-seq transitional T cells between effector and memory populations T1D T1D_2 chip0420_391062 PBMC +3139 CAMSGSNFGNEKLTF TRAV12-3*01 TRAJ48*01 HLA-A*02:01 B2M MHCI LLAGIGTVPI PGT HomoSapiens PMID:34811538 tetramer-sort yes amplicon-seq Naive T cells T1D T1D_1 chip0420_712896 PBMC +3140 CASRAGAGDTQYF TRAV9-1*01 TRAJ40*01 CASRAGAGDTQYF TRBV10-2*01 TRBJ2-3*01 HLA-A*02:01 B2M MHCI GLCTLVAML BLMF1 EBV PMID:34811538 tetramer-sort yes amplicon-seq effector memory T cells T1D T1D_2 chip0420_441170 PBMC +3141 CASSEDGMNTEAFF TRBV10-2*01 TRBJ1-1*01 HLA-A*02:01 B2M MHCI CLGGLLTMV LMP2A EBV PMID:34811538 tetramer-sort yes amplicon-seq effector memory T cells T1D T1D_2 chip0420_382330 PBMC +3143 CAETGNGGSQGNLIF TRAV5*01 TRAJ42*01 CASSAIGSSYNEQFF TRBV19*01 TRBJ2-1*01 HLA-A*02:01 B2M MHCI GILGFVFTL M1 InfluenzaA PMID:34811538 tetramer-sort yes amplicon-seq transitional T cells between effector and memory populations healthy healthy_1 chip0420_344509 PBMC +3144 CATQQGRDSQPQHF TRBV28*01 TRBJ1-5*01 HLA-A*02:01 B2M MHCI GLCTLVAML BLMF1 EBV PMID:34811538 tetramer-sort yes amplicon-seq effector T cells T1D T1D_1 chip0420_731555 PBMC +3145 CASSQSRGSLWDTQYF TRBV4-3*01 TRBJ2-3*01 HLA-A*02:01 B2M MHCI YVLDHLIVV BRLF1 EBV PMID:34811538 tetramer-sort yes amplicon-seq effector T cells T1D T1D_2 chip0420_637350 PBMC +3147 CGTENRNTDKLIF TRAV30*01 TRAJ34*01 HLA-B*08:01 B2M MHCI RAKFKQLL BZLF1 EBV PMID:34811538 tetramer-sort yes amplicon-seq effector memory T cells healthy healthy_2 chip0420_321156 PBMC +3148 CAFIQYGNKLVF TRAV38-1*01 TRAJ47*01 CASSLDINYGYTF TRBV13*01 TRBJ1-2*01 HLA-A*02:01 B2M MHCI YLLPGWKL VP3 RotavirusA PMID:34811538 tetramer-sort yes amplicon-seq Naive T cells T1D T1D_1 chip0420_184497 PBMC +3149 LCP*YG??tGCGYSF TRBV19*01 TRBJ1-2*01 HLA-A*02:01 B2M MHCI GILGFVFTL M1 InfluenzaA PMID:34811538 tetramer-sort yes amplicon-seq transitional T cells between effector and memory populations T1D T1D_1 chip0420_545111 PBMC +3150 CAESTSGGKLIF TRAV5*01 TRAJ23*01 CSVGTGGTNEKLFF TRBV29-1*01 TRBJ1-4*01 HLA-A*02:01 B2M MHCI GLCTLVAML BLMF1 EBV PMID:34811538 tetramer-sort yes amplicon-seq effector memory T cells T1D T1D_2 chip0420_528582 PBMC +3151 CASKMGAGATQYF TRBV10-2*01 TRBJ2-3*01 HLA-A*02:01 B2M MHCI GLCTLVAML BLMF1 EBV PMID:34811538 tetramer-sort yes amplicon-seq effector memory T cells T1D T1D_2 chip0420_384390 PBMC +3152 CASSSGGNVDTQYF TRBV7-3*01 TRBJ2-3*01 HLA-A*02:01 B2M MHCI GLCTLVAML BLMF1 EBV PMID:34811538 tetramer-sort yes amplicon-seq effector memory T cells T1D T1D_1 chip0420_449863 PBMC +3153 CAGPQGNLIF TRAV35*01 TRAJ42*01 HLA-A*02:01 B2M MHCI GIIYIIYKL P3A CoxsackievirusB PMID:34811538 tetramer-sort yes amplicon-seq Naive T cells T1D T1D_1 chip0420_520448 PBMC +3154 CASLTPGASKIIF TRAV8-6*01 TRAJ3*01 CASSSGLVAPGELFF TRBV2*01 TRBJ2-2*01 HLA-A*02:01 B2M MHCI GLCTLVAML BLMF1 EBV PMID:34811538 tetramer-sort yes amplicon-seq effector T cells T1D T1D_2 chip0420_178569 PBMC +3156 CASSSGAYGYTF TRBV19*01 TRBJ1-2*01 HLA-A*02:01 B2M MHCI GILGFVFTL M1 InfluenzaA PMID:34811538 tetramer-sort yes amplicon-seq transitional T cells between effector and memory populations T1D T1D_1 chip0420_862961 PBMC +3157 CASSYNGAEAFF TRBV7-2*01 TRBJ1-1*01 HLA-A*02:01 B2M MHCI VMNILLQYV GAD65 HomoSapiens PMID:34811538 tetramer-sort yes amplicon-seq Naive T cells T1D T1D_2 chip0420_179306 PBMC +3158 CSVGTGGTNEKLFF TRBV29-1*01 TRBJ1-4*01 HLA-A*02:01 B2M MHCI GLCTLVAML BLMF1 EBV PMID:34811538 tetramer-sort yes amplicon-seq effector memory T cells T1D T1D_2 chip0420_402974 PBMC +3159 CSVGTGGTNEKLFF TRBV29-1*01 TRBJ1-4*01 HLA-A*02:01 B2M MHCI GLCTLVAML BLMF1 EBV PMID:34811538 tetramer-sort yes amplicon-seq effector memory T cells T1D T1D_2 chip0420_303998 PBMC +3160 CASGTLAGAGQTQYF TRBV3-1*01 TRBJ2-5*01 HLA-A*02:01 B2M MHCI YVLDHLIVV BRLF1 EBV PMID:34811538 tetramer-sort yes amplicon-seq effector T cells T1D T1D_2 chip0420_269788 PBMC +3162 CASSLEASYEQYF TRBV7-8*01 TRBJ2-7*01 HLA-A*02:01 B2M MHCI ALGIGILTV MART1 HomoSapiens PMID:34811538 tetramer-sort yes amplicon-seq effector T cells T1D T1D_2 chip0420_521422 PBMC +3163 CASSPVRGSAYEQYF TRBV3-1*01 TRBJ2-7*01 HLA-A*02:01 B2M MHCI GLCTLVAML BLMF1 EBV PMID:34811538 tetramer-sort yes amplicon-seq effector memory T cells T1D T1D_1 chip0420_334702 PBMC +3164 CASSVRAGETQYF TRBV19*01 TRBJ2-5*01 HLA-A*02:01 B2M MHCI GILGFVFTL M1 InfluenzaA PMID:34811538 tetramer-sort yes amplicon-seq transitional T cells between effector and memory populations T1D T1D_1 chip0420_269128 PBMC +3167 CASNAYETSGTNEQFF TRBV9*01 TRBJ2-1*01 HLA-A*02:01 B2M MHCI LLSLFSLWL ZNT8 HomoSapiens PMID:34811538 tetramer-sort yes amplicon-seq Naive T cells T1D T1D_1 chip0420_656670 PBMC +3168 CASSPDQTSSYNEQFF TRBV27*01 TRBJ2-1*01 HLA-A*02:01 B2M MHCI YVLDHLIVV BRLF1 EBV PMID:34811538 tetramer-sort yes amplicon-seq effector memory T cells T1D T1D_1 chip0420_414347 PBMC +3169 CAVKDTDKLIF TRAV8-1*01 TRAJ34*01 CASSHLLGTGFGYTF TRBV3-1*01 TRBJ1-2*01 HLA-A*02:01 B2M MHCI YVLDHLIVV BRLF1 EBV PMID:34811538 tetramer-sort yes amplicon-seq effector memory T cells T1D T1D_1 chip0420_263854 PBMC +3171 CATSETSGSDEQFF TRBV24-1*01 TRBJ2-1*01 HLA-A*02:01 B2M MHCI YLVALGINAV POL HCV PMID:34811538 tetramer-sort yes amplicon-seq central memory T cells T1D T1D_2 chip0420_781462 PBMC +3172 CASTSVNYGYTF TRBV2*01 TRBJ1-2*01 HLA-A*02:01 B2M MHCI LLAGIGTVPI PGT HomoSapiens PMID:34811538 tetramer-sort yes amplicon-seq Naive T cells T1D T1D_2 chip0420_768163 PBMC +3173 CASSASGGAGDTQYF TRBV7-8*01 TRBJ2-3*01 HLA-A*02:01 B2M MHCI LLAGIGTVPI PGT HomoSapiens PMID:34811538 tetramer-sort yes amplicon-seq Naive T cells T1D T1D_1 chip0420_524848 PBMC +3174 CASSPVSGSTYEQYF TRBV3-1*01 TRBJ2-7*01 HLA-A*02:01 B2M MHCI GLCTLVAML BLMF1 EBV PMID:34811538 tetramer-sort yes amplicon-seq effector memory T cells T1D T1D_1 chip0420_834019 PBMC +3175 CASRAGAGDTQYF TRBV10-2*01 TRBJ2-3*01 HLA-A*02:01 B2M MHCI GLCTLVAML BLMF1 EBV PMID:34811538 tetramer-sort yes amplicon-seq effector memory T cells T1D T1D_2 chip0420_734352 PBMC +3176 CASSSGQVLPNEQFF TRBV2*01 TRBJ2-1*01 HLA-A*02:01 B2M MHCI GLCTLVAML BLMF1 EBV PMID:34811538 tetramer-sort yes amplicon-seq effector memory T cells T1D T1D_1 chip0420_624306 PBMC +3177 CVVNPFag??gaYSTLTF TRAV12-1*01 TRAJ11*01 CASSYMSGEAFF TRBV6-2*01,TRBV6-3*01 TRBJ1-1*01 HLA-A*02:01 B2M MHCI YVLDHLIVV BRLF1 EBV PMID:34811538 tetramer-sort yes amplicon-seq effector memory T cells T1D T1D_2 chip0420_375485 PBMC +3178 CATQQGRDSQPQHF TRBV28*01 TRBJ1-5*01 HLA-A*02:01 B2M MHCI GLCTLVAML BLMF1 EBV PMID:34811538 tetramer-sort yes amplicon-seq effector T cells T1D T1D_1 chip0420_284540 PBMC +3179 CASSMLLGGNQPQHF TRBV19*01 TRBJ1-5*01 HLA-A*02:01 B2M MHCI YVLDHLIVV BRLF1 EBV PMID:34811538 tetramer-sort yes amplicon-seq effector memory T cells T1D T1D_2 chip0420_277735 PBMC +3182 CAVRFEETSGSRLTF TRAV41*01 TRAJ10*01 HLA-A*02:01 B2M MHCI LLAGIGTVPI PGT HomoSapiens PMID:34811538 tetramer-sort yes amplicon-seq Naive T cells T1D T1D_1 chip0420_436881 PBMC +3183 CAVGDtt?GFFLRV TRAV8-4*01 TRAJ43*01 CSVGSRGTNEKLFF TRBV29-1*01 TRBJ1-4*01 HLA-A*02:01 B2M MHCI GLCTLVAML BLMF1 EBV PMID:34811538 tetramer-sort yes amplicon-seq effector T cells T1D T1D_1 chip0420_549960 PBMC +3184 CAAYAGNMLTF TRAV29/DV5*01 TRAJ39*01 CASRMGAGDTQYF TRBV10-2*01 TRBJ2-3*01 HLA-A*02:01 B2M MHCI GLCTLVAML BLMF1 EBV PMID:34811538 tetramer-sort yes amplicon-seq effector memory T cells T1D T1D_2 chip0420_142129 PBMC +3185 CSVGTGGTNEKLFF TRBV29-1*01 TRBJ1-4*01 HLA-A*02:01 B2M MHCI GLCTLVAML BLMF1 EBV PMID:34811538 tetramer-sort yes amplicon-seq effector T cells T1D T1D_2 chip0420_466700 PBMC +3186 YAIRGNNRLAF TRAV12-3*01 TRAJ7*01 CASRSDGSNQPQHF TRBV12-3*01,TRBV12-4*01 TRBJ1-5*01 HLA-A*02:01 B2M MHCI MLYQHLLPL INSDRIP HomoSapiens PMID:34811538 tetramer-sort yes amplicon-seq Naive T cells T1D T1D_2 chip0420_243318 PBMC +3189 CASSSGQVLPNEQFF TRBV2*01 TRBJ2-1*01 HLA-A*02:01 B2M MHCI GLCTLVAML BLMF1 EBV PMID:34811538 tetramer-sort yes amplicon-seq effector T cells T1D T1D_1 chip0420_625463 PBMC +3191 CAVSDRDGGFKTIF TRAV8-4*01 TRAJ9*01 CASSINGGRRDGYTF TRBV19*01 TRBJ1-2*01 HLA-A*02:01 B2M MHCI GILGFVFTL M1 InfluenzaA PMID:34811538 tetramer-sort yes amplicon-seq effector T cells T1D T1D_1 chip0420_5949 PBMC +3192 CSASRALDQPQHF TRBV20-1*01 TRBJ1-5*01 HLA-A*02:01 B2M MHCI YVLDHLIVV BRLF1 EBV PMID:34811538 tetramer-sort yes amplicon-seq transitional T cells between effector and memory populations healthy healthy_1 chip0420_709025 PBMC +3194 CATQQGRDSQPQHF TRBV28*01 TRBJ1-5*01 HLA-A*02:01 B2M MHCI GLCTLVAML BLMF1 EBV PMID:34811538 tetramer-sort yes amplicon-seq effector memory T cells T1D T1D_1 chip0420_583841 PBMC +3195 CADLECW??cNHRKLIW TRAV36/DV7*01 TRAJ38*01 HLA-A*02:01 B2M MHCI GLCTLVAML BLMF1 EBV PMID:34811538 tetramer-sort yes amplicon-seq effector memory T cells T1D T1D_1 chip0420_582195 PBMC +3196 CAPYNTDKLIF TRAV9-2*01 TRAJ34*01 CASSPVSGSTYEQYF TRBV3-1*01 TRBJ2-7*01 HLA-A*02:01 B2M MHCI GLCTLVAML BLMF1 EBV PMID:34811538 tetramer-sort yes amplicon-seq effector T cells T1D T1D_1 chip0420_880311 PBMC +3198 CAAYAGNMLTF TRAV29/DV5*01 TRAJ39*01 HLA-A*02:01 B2M MHCI GLCTLVAML BLMF1 EBV PMID:34811538 tetramer-sort yes amplicon-seq effector memory T cells T1D T1D_2 chip0420_45687 PBMC +3200 CSVGTGGTNEKLFF TRBV29-1*01 TRBJ1-4*01 HLA-A*02:01 B2M MHCI GLCTLVAML BLMF1 EBV PMID:34811538 tetramer-sort yes amplicon-seq effector memory T cells T1D T1D_2 chip0420_525789 PBMC +3201 CGTEEPNDYKLSF TRAV30*01 TRAJ20*01 CASSTGQLSNTGELFF TRBV9*01 TRBJ2-2*01 HLA-A*02:01 B2M MHCI GLCTLVAML BLMF1 EBV PMID:34811538 tetramer-sort yes amplicon-seq effector memory T cells T1D T1D_1 chip0420_422237 PBMC +3203 CASSSGLVAPGELFF TRBV2*01 TRBJ2-2*01 HLA-A*02:01 B2M MHCI GLCTLVAML BLMF1 EBV PMID:34811538 tetramer-sort yes amplicon-seq effector memory T cells T1D T1D_2 chip0420_628272 PBMC +3205 CAVEGANSTLTF TRAV12-2*01 TRAJ56*01 CASSLSIITEDGYTF TRBV27*01 TRBJ1-2*01 HLA-A*02:01 B2M MHCI LLAGIGTVPI PGT HomoSapiens PMID:34811538 tetramer-sort yes amplicon-seq Naive T cells T1D T1D_2 chip0420_159819 PBMC +3206 CASSYSTPGGEKLFF TRBV6-5*01 TRBJ1-4*01 HLA-A*02:01 B2M MHCI LLAGIGTVPI PGT HomoSapiens PMID:34811538 tetramer-sort yes amplicon-seq Naive T cells healthy healthy_1 chip0420_688183 PBMC +3207 CSTQEGGYGYTF TRBV29-1*01 TRBJ1-2*01 HLA-A*02:01 B2M MHCI GLCTLVAML BLMF1 EBV PMID:34811538 tetramer-sort yes amplicon-seq effector memory T cells T1D T1D_1 chip0420_486075 PBMC +3210 CSVGTGGTNEKLFF TRBV29-1*01 TRBJ1-4*01 HLA-A*02:01 B2M MHCI GLCTLVAML BLMF1 EBV PMID:34811538 tetramer-sort yes amplicon-seq effector T cells T1D T1D_2 chip0420_850539 PBMC +3212 CSAADQTYNEQFF TRBV20-1*01 TRBJ2-1*01 HLA-A*02:01 B2M MHCI YVLDHLIVV BRLF1 EBV PMID:34811538 tetramer-sort yes amplicon-seq effector T cells T1D T1D_1 chip0420_424043 PBMC +3213 CSVGTGGTNEKLFF TRBV29-1*01 TRBJ1-4*01 HLA-A*02:01 B2M MHCI GLCTLVAML BLMF1 EBV PMID:34811538 tetramer-sort yes amplicon-seq effector T cells T1D T1D_2 chip0420_516419 PBMC +3214 CVVNGRDSSYKLIF TRAV12-1*01 TRAJ12*01 CASSDGRVHPGTQYF TRBV2*01 TRBJ2-5*01 HLA-A*02:01 B2M MHCI GLCTLVAML BLMF1 EBV PMID:34811538 tetramer-sort yes amplicon-seq effector memory T cells T1D T1D_1 chip0420_235010 PBMC +3215 CSVGSRGTNEKLFF TRBV29-1*01 TRBJ1-4*01 HLA-A*02:01 B2M MHCI GLCTLVAML BLMF1 EBV PMID:34811538 tetramer-sort yes amplicon-seq effector memory T cells T1D T1D_1 chip0420_761593 PBMC +3216 CVANGRDSSYKLIF TRAV12-1*01 TRAJ12*01 CASSSGLVAPGELFF TRBV2*01 TRBJ2-2*01 HLA-A*02:01 B2M MHCI GLCTLVAML BLMF1 EBV PMID:34811538 tetramer-sort yes amplicon-seq effector memory T cells T1D T1D_2 chip0420_404553 PBMC +3218 CASRRAGTEAFF TRAV41*01,TRAV27*01 TRAJ40*01 CASRRDGTEAFF TRBV30*01 TRBJ1-1*01 HLA-A*02:01 B2M MHCI GIIYIIYKL P3A CoxsackievirusB PMID:34811538 tetramer-sort yes amplicon-seq transitional T cells between effector and memory populations T1D T1D_1 chip0420_357342 PBMC +3220 CASSFLRGSGHEQFF TRBV28*01 TRBJ2-1*01 HLA-A*02:01 B2M MHCI YVLDHLIVV BRLF1 EBV PMID:34811538 tetramer-sort yes amplicon-seq effector memory T cells T1D T1D_2 chip0420_391548 PBMC +3224 CASSSGLVAPGELFF TRBV2*01 TRBJ2-2*01 HLA-A*02:01 B2M MHCI GLCTLVAML BLMF1 EBV PMID:34811538 tetramer-sort yes amplicon-seq effector memory T cells T1D T1D_2 chip0420_364492 PBMC +3225 CAVNDMRF TRAV12-2*01 TRAJ43*01 HLA-A*02:01 B2M MHCI LLAGIGTVPI PGT HomoSapiens PMID:34811538 tetramer-sort yes amplicon-seq Naive T cells T1D T1D_1 chip0420_266042 PBMC +3226 CASLTPGASKIIF TRAV8-6*01 TRAJ3*01 CASSSGLVAPGELFF TRBV2*01 TRBJ2-2*01 HLA-A*02:01 B2M MHCI GLCTLVAML BLMF1 EBV PMID:34811538 tetramer-sort yes amplicon-seq effector T cells T1D T1D_2 chip0420_693157 PBMC +3227 CAMSRPHFGHANFPF TRAV12-3*01 TRAJ48*01 CASSKSGRDGSTDTQYF TRBV28*01 TRBJ2-3*01 HLA-A*02:01 B2M MHCI LLAGIGTVPI PGT HomoSapiens PMID:34811538 tetramer-sort yes amplicon-seq Naive T cells T1D T1D_1 chip0420_280579 PBMC +3228 CAMSRSNFGNEKLTF TRAV12-3*01 TRAJ48*01 CSAQDPGQGMSAQHF TRBV20-1*01 TRBJ1-5*01 HLA-A*02:01 B2M MHCI LLAGIGTVPI PGT HomoSapiens PMID:34811538 tetramer-sort yes amplicon-seq Naive T cells T1D T1D_1 chip0420_507126 PBMC +3229 CASRHRQGGNTEAFF TRBV28*01 TRBJ1-1*01 HLA-A*02:01 B2M MHCI KLVALGINAV NS3 HCV PMID:34811538 tetramer-sort yes amplicon-seq natural killer-like T cells healthy healthy_1 chip0420_223808 PBMC +3230 CSVGSRGTNEKLFF TRBV29-1*01 TRBJ1-4*01 HLA-A*02:01 B2M MHCI GLCTLVAML BLMF1 EBV PMID:34811538 tetramer-sort yes amplicon-seq effector memory T cells T1D T1D_1 chip0420_121365 PBMC +3231 CAMREGVVEYGNKLVF TRAV14/DV4*01 TRAJ47*01 CASSFGAGELFF TRBV19*01 TRBJ2-2*01 HLA-A*02:01 B2M MHCI GILGFVFTL M1 InfluenzaA PMID:34811538 tetramer-sort yes amplicon-seq transitional T cells between effector and memory populations T1D T1D_1 chip0420_657899 PBMC +3232 CASSLDVAAHYNEQFF TRBV27*01 TRBJ2-1*01 HLA-A*02:01 B2M MHCI YVLDHLIVV BRLF1 EBV PMID:34811538 tetramer-sort yes amplicon-seq effector memory T cells T1D T1D_1 chip0420_136621 PBMC +3234 CAGRGDKPIF TRAV27*01 TRAJ34*01 CASSSGGTGLYEQYF TRBV3-1*01 TRBJ2-7*01 HLA-A*02:01 B2M MHCI LLAGIGTVPI PGT HomoSapiens PMID:34811538 tetramer-sort yes amplicon-seq Naive T cells T1D T1D_2 chip0420_439456 PBMC +3237 CAMSISNFGNEKLTF TRAV12-3*01 TRAJ48*01 CSATTTGTSNQPQHF TRBV20-1*01 TRBJ1-5*01 HLA-A*02:01 B2M MHCI LLAGIGTVPI PGT HomoSapiens PMID:34811538 tetramer-sort yes amplicon-seq Naive T cells T1D T1D_2 chip0420_867031 PBMC +3238 CAPEGASGYSTLTF TRAV17*01 TRAJ11*01 HLA-A*02:01 B2M MHCI FLYALALLL LMP2 EBV PMID:34811538 tetramer-sort yes amplicon-seq central memory T cells T1D T1D_1 chip0420_485110 PBMC +3239 CASSPSTSGSGETQYF TRBV3-1*01 TRBJ2-5*01 HLA-A*02:01 B2M MHCI YVLDHLIVV BRLF1 EBV PMID:34811538 tetramer-sort yes amplicon-seq effector memory T cells T1D T1D_2 chip0420_247312 PBMC +3240 CSVDQRTGQKKNYGYTF TRBV29-1*01 TRBJ1-2*01 HLA-A*02:01 B2M MHCI GLCTLVAML BLMF1 EBV PMID:34811538 tetramer-sort yes amplicon-seq effector memory T cells T1D T1D_2 chip0420_794425 PBMC +3242 CASSPQGGNYGYTF TRBV6-1*01 TRBJ1-2*01 HLA-A*02:01 B2M MHCI FLYALALLL LMP2 EBV PMID:34811538 tetramer-sort yes amplicon-seq central memory T cells healthy healthy_1 chip0420_181066 PBMC +3243 CASSSGLVAPGELFF TRBV2*01 TRBJ2-2*01 HLA-A*02:01 B2M MHCI GLCTLVAML BLMF1 EBV PMID:34811538 tetramer-sort yes amplicon-seq effector memory T cells T1D T1D_2 chip0420_81453 PBMC +3244 CAVKDTDKLIF TRAV8-1*01 TRAJ34*01 HLA-A*02:01 B2M MHCI YVLDHLIVV BRLF1 EBV PMID:34811538 tetramer-sort yes amplicon-seq effector memory T cells T1D T1D_2 chip0420_502530 PBMC +3246 CASVFLGTGLNEQYF TRBV28*01 TRBJ2-7*01 HLA-A*02:01 B2M MHCI GLCTLVAML BLMF1 EBV PMID:34811538 tetramer-sort yes amplicon-seq effector memory T cells T1D T1D_1 chip0420_869484 PBMC +3248 CASRAGAGDTQYF TRBV10-2*01 TRBJ2-3*01 HLA-A*02:01 B2M MHCI GLCTLVAML BLMF1 EBV PMID:34811538 tetramer-sort yes amplicon-seq effector memory T cells T1D T1D_1 chip0420_535282 PBMC +3249 CASSTPDRADPNYGYTF TRBV19*01 TRBJ1-2*01 HLA-A*02:01 B2M MHCI GILGFVFTL M1 InfluenzaA PMID:34811538 tetramer-sort yes amplicon-seq Naive T cells T1D T1D_1 chip0420_562941 PBMC +3250 CAAPTGANNLFF TRAV12-2*01 TRAJ36*01 HLA-A*02:01 B2M MHCI LLAGIGTVPI PGT HomoSapiens PMID:34811538 tetramer-sort yes amplicon-seq effector T cells T1D T1D_2 chip0420_332059 PBMC +3251 CLLFLLVgt?TSYGKLTF TRAV26-2*01 TRAJ52*01 CASSSGGNVDTQYF TRBV7-3*01 TRBJ2-3*01 HLA-A*02:01 B2M MHCI GLCTLVAML BLMF1 EBV PMID:34811538 tetramer-sort yes amplicon-seq effector memory T cells T1D T1D_1 chip0420_869128 PBMC +3253 CASSPVSGSTYEQYF TRBV3-1*01 TRBJ2-7*01 HLA-A*02:01 B2M MHCI GLCTLVAML BLMF1 EBV PMID:34811538 tetramer-sort yes amplicon-seq effector T cells T1D T1D_1 chip0420_21580 PBMC +3254 CASSSGGNVDTQYF TRBV7-3*01 TRBJ2-3*01 HLA-A*02:01 B2M MHCI GLCTLVAML BLMF1 EBV PMID:34811538 tetramer-sort yes amplicon-seq effector memory T cells T1D T1D_1 chip0420_334391 PBMC +3255 CAVNDGGFQKLVF TRAV8-1*01 TRAJ8*01 CASRGLTGGGSEAFF TRBV28*01 TRBJ1-1*01 HLA-A*02:01 B2M MHCI YVLDHLIVV BRLF1 EBV PMID:34811538 tetramer-sort yes amplicon-seq effector memory T cells T1D T1D_1 chip0420_147338 PBMC +3256 CAMEGNSGYSTLTF TRAV17*01 TRAJ11*01 HLA-A*02:01 B2M MHCI FLYALALLL LMP2 EBV PMID:34811538 tetramer-sort yes amplicon-seq central memory T cells T1D T1D_2 chip0420_567954 PBMC +3257 CASSGRSTDTQYF TRBV19*01 TRBJ2-3*01 HLA-A*02:01 B2M MHCI GILGFVFTL M1 InfluenzaA PMID:34811538 tetramer-sort yes amplicon-seq transitional T cells between effector and memory populations T1D T1D_1 chip0420_186390 PBMC +3258 CAMSLSNFGNEKLTF TRAV12-3*01 TRAJ48*01 CSARVRDRVNEQFF TRBV20-1*01 TRBJ2-1*01 HLA-A*02:01 B2M MHCI LLAGIGTVPI PGT HomoSapiens PMID:34811538 tetramer-sort yes amplicon-seq Naive T cells T1D T1D_1 chip0420_179871 PBMC +3259 CASSNHKKGHIDEQFF TRBV6-1*01 TRBJ2-1*01 HLA-A*02:01 B2M MHCI LLAGIGTVPI PGT HomoSapiens PMID:34811538 tetramer-sort yes amplicon-seq Naive T cells T1D T1D_1 chip0420_136146 PBMC +3260 LCQ*FW??aAGALFF TRBV19*01 TRBJ2-2*01 HLA-A*02:01 B2M MHCI GILGFVFTL M1 InfluenzaA PMID:34811538 tetramer-sort yes amplicon-seq transitional T cells between effector and memory populations T1D T1D_1 chip0420_588684 PBMC +3262 CASSTGQLSNTGELFF TRBV9*01 TRBJ2-2*01 HLA-A*02:01 B2M MHCI GLCTLVAML BLMF1 EBV PMID:34811538 tetramer-sort yes amplicon-seq effector memory T cells T1D T1D_1 chip0420_11697 PBMC +3263 CAAYAGNMLTF TRAV29/DV5*01 TRAJ39*01 CASRMGAGDTQYF TRBV10-2*01 TRBJ2-3*01 HLA-A*02:01 B2M MHCI GLCTLVAML BLMF1 EBV PMID:34811538 tetramer-sort yes amplicon-seq effector memory T cells T1D T1D_2 chip0420_872390 PBMC +3264 CAWRPLFGGAAEAFF TRBV30*01 TRBJ1-1*01 HLA-A*02:01 B2M MHCI YVLDHLIVV BRLF1 EBV PMID:34811538 tetramer-sort yes amplicon-seq effector T cells T1D T1D_1 chip0420_420004 PBMC +3265 CAANYGGSQGNLIF TRAV25*01 TRAJ42*01 HLA-A*02:01 B2M MHCI GILGFVFTL M1 InfluenzaA PMID:34811538 tetramer-sort yes amplicon-seq transitional T cells between effector and memory populations T1D T1D_1 chip0420_198159 PBMC +3266 CSVGSRGTNEKLFF TRBV29-1*01 TRBJ1-4*01 HLA-A*02:01 B2M MHCI GLCTLVAML BLMF1 EBV PMID:34811538 tetramer-sort yes amplicon-seq effector memory T cells T1D T1D_1 chip0420_41107 PBMC +3268 CAEIKAGNMLTF TRAV13-2*01 TRAJ39*01 CASRPEMgg?VMNTEAFF TRBV4-3*01 TRBJ1-1*01 HLA-A*02:01 B2M MHCI YVLDHLIVV BRLF1 EBV PMID:34811538 tetramer-sort yes amplicon-seq effector T cells T1D T1D_2 chip0420_299177 PBMC +3269 CASSPTSGRPDTQYF TRBV2*01 TRBJ2-3*01 HLA-A*02:01 B2M MHCI ALAGIGILTV MART1 HomoSapiens PMID:34811538 tetramer-sort yes amplicon-seq Naive T cells T1D T1D_1 chip0420_683743 PBMC +3270 CASSLPGLYYGYTF TRBV19*01 TRBJ1-2*01 HLA-A*02:01 B2M MHCI YVLDHLIVV BRLF1 EBV PMID:34811538 tetramer-sort yes amplicon-seq effector memory T cells T1D T1D_2 chip0420_479899 PBMC +3271 CSVGSRGTNEKLFF TRBV29-1*01 TRBJ1-4*01 HLA-A*02:01 B2M MHCI GLCTLVAML BLMF1 EBV PMID:34811538 tetramer-sort yes amplicon-seq effector T cells T1D T1D_1 chip0420_793072 PBMC +3272 CAVNPYGSSNTGKLIF TRAV8-1*01 TRAJ37*01 CASRIATWTGSLWGAFF TRBV19*01 TRBJ1-1*01 HLA-A*02:01 B2M MHCI YLLPGWKL VP3 RotavirusA PMID:34811538 tetramer-sort yes amplicon-seq Naive T cells T1D T1D_1 chip0420_519368 PBMC +3273 CALSEGVGTGGFKTIF TRAV19*01 TRAJ9*01 HLA-A*02:01 B2M MHCI GILGFVFTL M1 InfluenzaA PMID:34811538 tetramer-sort yes amplicon-seq transitional T cells between effector and memory populations T1D T1D_1 chip0420_515021 PBMC +3275 CASSLAGGGEQYF TRBV5-1*01 TRBJ2-7*01 HLA-A*02:01 B2M MHCI YVLDHLIVV BRLF1 EBV PMID:34811538 tetramer-sort yes amplicon-seq effector memory T cells T1D T1D_2 chip0420_52043 PBMC +3276 CASSTGQLSNTGELFF TRBV9*01 TRBJ2-2*01 HLA-A*02:01 B2M MHCI GLCTLVAML BLMF1 EBV PMID:34811538 tetramer-sort yes amplicon-seq effector memory T cells T1D T1D_1 chip0420_807544 PBMC +3277 CAAYAGNMLTF TRAV29/DV5*01 TRAJ39*01 CASRAGAGDTQYF TRBV10-2*01 TRBJ2-3*01 HLA-A*02:01 B2M MHCI GLCTLVAML BLMF1 EBV PMID:34811538 tetramer-sort yes amplicon-seq effector memory T cells T1D T1D_2 chip0420_306389 PBMC +3279 CASSTGQLSNTGELFF TRBV9*01 TRBJ2-2*01 HLA-A*02:01 B2M MHCI GLCTLVAML BLMF1 EBV PMID:34811538 tetramer-sort yes amplicon-seq effector memory T cells T1D T1D_1 chip0420_549940 PBMC +3280 CASSVWAGEAQYF TRBV19*01 TRBJ2-5*01 HLA-A*02:01 B2M MHCI GILGFVFTL M1 InfluenzaA PMID:34811538 tetramer-sort yes amplicon-seq transitional T cells between effector and memory populations T1D T1D_1 chip0420_499795 PBMC +3281 CVVNGRDSSYKLIF TRAV12-1*01 TRAJ12*01 CASSSGLVAPGELFF TRBV2*01 TRBJ2-2*01 HLA-A*02:01 B2M MHCI GLCTLVAML BLMF1 EBV PMID:34811538 tetramer-sort yes amplicon-seq effector memory T cells T1D T1D_2 chip0420_325842 PBMC +3286 CAMREPSMDTGRRALTF TRAV14/DV4*01 TRAJ5*01 LCQSYLPGV??cEITNNEQFF TRBV19*01 TRBJ2-1*01 HLA-A*02:01 B2M MHCI RLLPLLALL PREINS HomoSapiens PMID:34811538 tetramer-sort yes amplicon-seq Naive T cells T1D T1D_2 chip0420_689892 PBMC +3288 CASSPGDARGEQYF TRBV5-6*01 TRBJ2-7*01 HLA-A*02:01 B2M MHCI YLLEMLWRL LMP1 EBV PMID:34811538 tetramer-sort yes amplicon-seq central memory T cells T1D T1D_1 chip0420_759913 PBMC +3289 CALNTDKLIF TRAV8-1*01 TRAJ34*01 HLA-A*02:01 B2M MHCI YVLDHLIVV BRLF1 EBV PMID:34811538 tetramer-sort yes amplicon-seq effector T cells T1D T1D_2 chip0420_628660 PBMC +3291 CSVGSRGTNEKLFF TRBV29-1*01 TRBJ1-4*01 HLA-A*02:01 B2M MHCI GLCTLVAML BLMF1 EBV PMID:34811538 tetramer-sort yes amplicon-seq effector memory T cells T1D T1D_1 chip0420_251167 PBMC +3292 CASSTGQLSNTGELFF TRBV9*01 TRBJ2-2*01 HLA-A*02:01 B2M MHCI GLCTLVAML BLMF1 EBV PMID:34811538 tetramer-sort yes amplicon-seq transitional T cells between effector and memory populations T1D T1D_1 chip0420_742697 PBMC +3293 CASSPVSGSTYEQYF TRBV3-1*01 TRBJ2-7*01 HLA-A*02:01 B2M MHCI GLCTLVAML BLMF1 EBV PMID:34811538 tetramer-sort yes amplicon-seq effector memory T cells T1D T1D_1 chip0420_681117 PBMC +3294 CGTEEPNDYKLSF TRAV30*01 TRAJ20*01 HLA-A*02:01 B2M MHCI GLCTLVAML BLMF1 EBV PMID:34811538 tetramer-sort yes amplicon-seq effector memory T cells T1D T1D_1 chip0420_532633 PBMC +3295 CSVGSRGTNEKLFF TRBV29-1*01 TRBJ1-4*01 HLA-A*02:01 B2M MHCI GLCTLVAML BLMF1 EBV PMID:34811538 tetramer-sort yes amplicon-seq effector memory T cells T1D T1D_1 chip0420_524609 PBMC +3296 CAISARga?GGIILSF TRAV12-3*01 TRAJ10*01 CAISDPGTSGLNEQFF TRBV10-3*01 TRBJ2-1*01 HLA-A*02:01 B2M MHCI LLAGIGTVPI PGT HomoSapiens PMID:34811538 tetramer-sort yes amplicon-seq Naive T cells T1D T1D_1 chip0420_880266 PBMC +3297 CASTSGtc??ggAFEQYF TRBV7-9*01 TRBJ2-7*01 HLA-A*02:01 B2M MHCI YVLDHLIVV BRLF1 EBV PMID:34811538 tetramer-sort yes amplicon-seq effector memory T cells T1D T1D_2 chip0420_854232 PBMC +3298 CAVPALDKLIF TRAV8-1*01 TRAJ34*01 CASSEAFLADNEQFF TRBV6-4*01 TRBJ2-1*01 HLA-A*02:01 B2M MHCI YVLDHLIVV BRLF1 EBV PMID:34811538 tetramer-sort yes amplicon-seq effector memory T cells T1D T1D_1 chip0420_786917 PBMC +3299 CGTEEPNDYKLSF TRAV30*01 TRAJ20*01 CASSTGPLSNTGELFF TRBV9*01 TRBJ2-2*01 HLA-A*02:01 B2M MHCI GLCTLVAML BLMF1 EBV PMID:34811538 tetramer-sort yes amplicon-seq effector T cells T1D T1D_1 chip0420_251119 PBMC +3300 CAVEGHDKIIF TRAV8-1*01 TRAJ30*01 CASSPDQTSSYNEQFF TRBV27*01 TRBJ2-1*01 HLA-A*02:01 B2M MHCI YVLDHLIVV BRLF1 EBV PMID:34811538 tetramer-sort yes amplicon-seq effector T cells T1D T1D_1 chip0420_546281 PBMC +3302 CSARGQYANTGELFF TRBV20-1*01 TRBJ2-2*01 HLA-A*02:01 B2M MHCI LLAGIGTVPI PGT HomoSapiens PMID:34811538 tetramer-sort yes amplicon-seq Naive T cells T1D T1D_1 chip0420_192731 PBMC +3304 CAAPPPNAGNMLTF TRAV29/DV5*01 TRAJ39*01 CASSPGTGGHEQYF TRBV7-9*01 TRBJ2-7*01 HLA-A*02:01 B2M MHCI GLCTLVAML BLMF1 EBV PMID:34811538 tetramer-sort yes amplicon-seq effector memory T cells T1D T1D_2 chip0420_84611 PBMC +3305 CASSREEQGYFQYF TRBV7-9*01 TRBJ2-4*01 HLA-A*02:01 B2M MHCI ALAGIGILTV MART1 HomoSapiens PMID:34811538 tetramer-sort yes amplicon-seq Naive T cells T1D T1D_2 chip0420_383952 PBMC +3306 CSVGSRGTNEKLFF TRBV29-1*01 TRBJ1-4*01 HLA-A*02:01 B2M MHCI GLCTLVAML BLMF1 EBV PMID:34811538 tetramer-sort yes amplicon-seq effector memory T cells T1D T1D_1 chip0420_342768 PBMC +3307 CASSTYLGRGTEAFF TRAV9-1*01 TRAJ40*01 CASSTYLGRGTEAFF TRBV27*01 TRBJ1-1*01 HLA-A*02:01 B2M MHCI YVLDHLIVV BRLF1 EBV PMID:34811538 tetramer-sort yes amplicon-seq effector memory T cells T1D T1D_2 chip0420_214984 PBMC +3308 CSVGSRGTNEKLFF TRBV29-1*01 TRBJ1-4*01 HLA-A*02:01 B2M MHCI GLCTLVAML BLMF1 EBV PMID:34811538 tetramer-sort yes amplicon-seq effector T cells T1D T1D_1 chip0420_16157 PBMC +3311 CAWARAGSPLHF TRBV30*01 TRBJ1-6*01 HLA-A*02:01 B2M MHCI GIIYIIYKL P3A CoxsackievirusB PMID:34811538 tetramer-sort yes amplicon-seq Naive T cells T1D T1D_1 chip0420_379715 PBMC +3312 CAVEPAYY??cSGTYKYIF TRAV2*01 TRAJ40*01 CASSVQGGNYGYTF TRBV6-1*01 TRBJ1-2*01 HLA-A*02:01 B2M MHCI FLYALALLL LMP2 EBV PMID:34811538 tetramer-sort yes amplicon-seq central memory T cells T1D T1D_1 chip0420_209314 PBMC +3313 CASSLLTSGANVLTF TRBV11-2*01 TRBJ2-6*01 HLA-A*02:01 B2M MHCI GLCTLVAML BLMF1 EBV PMID:34811538 tetramer-sort yes amplicon-seq effector memory T cells T1D T1D_1 chip0420_530287 PBMC +3314 CASSHQASEQYF TRBV10-1*01 TRBJ2-7*01 HLA-A*02:01 B2M MHCI YVLDHLIVV BRLF1 EBV PMID:34811538 tetramer-sort yes amplicon-seq transitional T cells between effector and memory populations T1D T1D_2 chip0420_381845 PBMC +3315 CASGSTGPGDSPLHF TRBV12-5*01 TRBJ1-6*01 HLA-B*08:01 B2M MHCI RAKFKQLL BZLF1 EBV PMID:34811538 tetramer-sort yes amplicon-seq effector memory T cells healthy healthy_2 chip0420_716521 PBMC +3316 CASSYGPGPGVDRYQETQYF TRBV6-2*01,TRBV6-3*01 TRBJ2-5*01 HLA-A*02:01 B2M MHCI LLAGIGTVPI PGT HomoSapiens PMID:34811538 tetramer-sort yes amplicon-seq Naive T cells T1D T1D_1 chip0420_709009 PBMC +3317 CASSPPGGRGTEAFF TRBV19*01 TRBJ1-1*01 HLA-A*02:01 B2M MHCI LLAGIGTVPI PGT HomoSapiens PMID:34811538 tetramer-sort yes amplicon-seq Naive T cells T1D T1D_1 chip0420_378612 PBMC +3318 CAISEGTLSSYNEQFF TRBV10-3*01 TRBJ2-1*01 HLA-A*02:01 B2M MHCI YVLDHLIVV BRLF1 EBV PMID:34811538 tetramer-sort yes amplicon-seq effector memory T cells T1D T1D_1 chip0420_282252 PBMC +3319 CGPVDLTDKLIF TRAV30*01 TRAJ34*01 HLA-A*02:01 B2M MHCI FLGKIWPSYK GAG HIV-1 PMID:34811538 tetramer-sort yes amplicon-seq transitional T cells between effector and memory populations T1D T1D_2 chip0420_260934 PBMC +3320 CANSYQYGGRGPSAGELFF TRBV6-2*01,TRBV6-3*01 TRBJ2-2*01 HLA-A*02:01 B2M MHCI LLAGIGTVPI PGT HomoSapiens PMID:34811538 tetramer-sort yes amplicon-seq Naive T cells T1D T1D_1 chip0420_189320 PBMC +3322 CASSKTGGEGETQYF TRBV6-1*01 TRBJ2-5*01 HLA-A*02:01 B2M MHCI LLAGIGTVPI PGT HomoSapiens PMID:34811538 tetramer-sort yes amplicon-seq Naive T cells T1D T1D_1 chip0420_814525 PBMC +3323 CAMSGSNFGNEKLTF TRAV12-3*01 TRAJ48*01 HLA-A*02:01 B2M MHCI LLAGIGTVPI PGT HomoSapiens PMID:34811538 tetramer-sort yes amplicon-seq Naive T cells T1D T1D_1 chip0420_517868 PBMC +3326 CAFIPISNFGNEKLTF TRAV24*01 TRAJ48*01 HLA-A*02:01 B2M MHCI GILGFVFTL M1 InfluenzaA PMID:34811538 tetramer-sort yes amplicon-seq Naive T cells healthy healthy_1 chip0420_770716 PBMC +3327 CSDRDGGNYGYTF TRBV29-1*01 TRBJ1-2*01 HLA-A*02:01 B2M MHCI YVLDHLIVV BRLF1 EBV PMID:34811538 tetramer-sort yes amplicon-seq effector memory T cells T1D T1D_2 chip0420_760056 PBMC +3328 CASRMGAGDTQYF TRBV10-2*01 TRBJ2-3*01 HLA-A*02:01 B2M MHCI GLCTLVAML BLMF1 EBV PMID:34811538 tetramer-sort yes amplicon-seq effector memory T cells T1D T1D_2 chip0420_510476 PBMC +3329 CVVNGRDSSYKLIF TRAV12-1*01 TRAJ12*01 CASSSGLVAPGELFF TRBV2*01 TRBJ2-2*01 HLA-A*02:01 B2M MHCI GLCTLVAML BLMF1 EBV PMID:34811538 tetramer-sort yes amplicon-seq effector memory T cells T1D T1D_2 chip0420_303299 PBMC +3330 CASSPVSGSTYEQYL TRBV3-1*01 TRBJ2-7*01 HLA-A*02:01 B2M MHCI GLCTLVAML BLMF1 EBV PMID:34811538 tetramer-sort yes amplicon-seq effector T cells T1D T1D_1 chip0420_678910 PBMC +3332 CATDAAGNQFYF TRAV17*01 TRAJ49*01 HLA-A*02:01 B2M MHCI ILMNDQEVGV P3C CoxsackievirusB PMID:34811538 tetramer-sort yes amplicon-seq Naive T cells T1D T1D_1 chip0420_140243 PBMC +3333 CASSPSTSGSGETQYF TRBV3-1*01 TRBJ2-5*01 HLA-A*02:01 B2M MHCI YVLDHLIVV BRLF1 EBV PMID:34811538 tetramer-sort yes amplicon-seq effector memory T cells T1D T1D_2 chip0420_882944 PBMC +3334 CASSPVSGSTYEQYF TRBV3-1*01 TRBJ2-7*01 HLA-A*02:01 B2M MHCI GLCTLVAML BLMF1 EBV PMID:34811538 tetramer-sort yes amplicon-seq effector memory T cells T1D T1D_1 chip0420_24921 PBMC +3335 CASSLEVGGDNTEAFF TRBV7-3*01 TRBJ1-1*01 HLA-A*02:01 B2M MHCI LLAGIGTVPI PGT HomoSapiens PMID:34811538 tetramer-sort yes amplicon-seq Naive T cells healthy healthy_1 chip0420_208886 PBMC +3336 CASSWSGSTGELFF TRBV6-2*01,TRBV6-3*01 TRBJ2-2*01 HLA-A*02:01 B2M MHCI FLWSVFMLI IGRP HomoSapiens PMID:34811538 tetramer-sort yes amplicon-seq central memory T cells T1D T1D_2 chip0420_785470 PBMC +3337 CASSQSPGGTQYF TRBV14*01 TRBJ2-3*01 HLA-A*02:01 B2M MHCI GLCTLVAML BLMF1 EBV PMID:34811538 tetramer-sort yes amplicon-seq effector memory T cells T1D T1D_1 chip0420_752555 PBMC +3338 CASSINGGRRDGYTF TRBV19*01 TRBJ1-2*01 HLA-A*02:01 B2M MHCI GILGFVFTL M1 InfluenzaA PMID:34811538 tetramer-sort yes amplicon-seq transitional T cells between effector and memory populations T1D T1D_1 chip0420_827529 PBMC +3339 CATQQGRDSQPQHF TRBV28*01 TRBJ1-5*01 HLA-A*02:01 B2M MHCI GLCTLVAML BLMF1 EBV PMID:34811538 tetramer-sort yes amplicon-seq effector memory T cells T1D T1D_1 chip0420_662191 PBMC +3340 CSARDGTGNGYTF TRBV20-1*01 TRBJ1-2*01 HLA-A*02:01 B2M MHCI GLCTLVAML BLMF1 EBV PMID:34811538 tetramer-sort yes amplicon-seq effector T cells T1D T1D_1 chip0420_13143 PBMC +3341 CADDGVVPg?cGAAAGLTF TRAV21*01 TRAJ45*01 HLA-A*02:01 B2M MHCI GILGFVFTL M1 InfluenzaA PMID:34811538 tetramer-sort yes amplicon-seq transitional T cells between effector and memory populations healthy healthy_1 chip0420_78445 PBMC +3342 CASSQGLANVLTF TRBV3-1*01 TRBJ2-6*01 HLA-A*02:01 B2M MHCI YVLDHLIVV BRLF1 EBV PMID:34811538 tetramer-sort yes amplicon-seq effector memory T cells T1D T1D_1 chip0420_743935 PBMC +3344 CASSPVSGSTYEQYF TRBV3-1*01 TRBJ2-7*01 HLA-A*02:01 B2M MHCI GLCTLVAML BLMF1 EBV PMID:34811538 tetramer-sort yes amplicon-seq effector memory T cells T1D T1D_1 chip0420_628216 PBMC +3345 CVVNGRDSSYKLIF TRAV12-1*01 TRAJ12*01 CASSSGLVAPGELFF TRBV2*01 TRBJ2-2*01 HLA-A*02:01 B2M MHCI GLCTLVAML BLMF1 EBV PMID:34811538 tetramer-sort yes amplicon-seq effector memory T cells T1D T1D_2 chip0420_545066 PBMC +3346 CAFMKDAGGPSYGSLTF TRAV38-1*01 TRAJ52*01 HLA-A*02:01 B2M MHCI GILGFVFTL M1 InfluenzaA PMID:34811538 tetramer-sort yes amplicon-seq transitional T cells between effector and memory populations T1D T1D_1 chip0420_501658 PBMC +3347 CASSESGNTIYF TRBV7-9*01 TRBJ1-3*01 HLA-A*02:01 B2M MHCI VVTGVLVYL ZNT8 HomoSapiens PMID:34811538 tetramer-sort yes amplicon-seq transitional T cells between effector and memory populations T1D T1D_1 chip0420_314061 PBMC +3349 CASSLTLISGDSYNEQFF TRBV7-3*01 TRBJ2-1*01 HLA-B*08:01 B2M MHCI RAKFKQLL BZLF1 EBV PMID:34811538 tetramer-sort yes amplicon-seq effector memory T cells T1D T1D_3 chip0420_41323 PBMC +3350 CAMREGTSNFNKFYF TRAV14/DV4*01 TRAJ21*01 HLA-A*02:01 B2M MHCI YVLDHLIVV BRLF1 EBV PMID:34811538 tetramer-sort yes amplicon-seq effector memory T cells T1D T1D_2 chip0420_721741 PBMC +3351 CASRAGAGDTQYF TRBV10-2*01 TRBJ2-3*01 HLA-A*02:01 B2M MHCI GLCTLVAML BLMF1 EBV PMID:34811538 tetramer-sort yes amplicon-seq effector memory T cells T1D T1D_2 chip0420_589411 PBMC +3353 CAAYAGNMLTF TRAV29/DV5*01 TRAJ39*01 CASRAGAGDTQYF TRBV10-2*01 TRBJ2-3*01 HLA-A*02:01 B2M MHCI GLCTLVAML BLMF1 EBV PMID:34811538 tetramer-sort yes amplicon-seq effector memory T cells T1D T1D_2 chip0420_137518 PBMC +3354 CAESTSGGKLIF TRAV5*01 TRAJ23*01 CSVGSRGTNEKLFF TRBV29-1*01 TRBJ1-4*01 HLA-A*02:01 B2M MHCI GLCTLVAML BLMF1 EBV PMID:34811538 tetramer-sort yes amplicon-seq effector memory T cells T1D T1D_1 chip0420_584817 PBMC +3355 CASNSGQVLPNEQFF TRBV2*01 TRBJ2-1*01 HLA-A*02:01 B2M MHCI GLCTLVAML BLMF1 EBV PMID:34811538 tetramer-sort yes amplicon-seq effector T cells T1D T1D_1 chip0420_228552 PBMC +3359 CASSGFPGLAQETQYF TRBV2*01 TRBJ2-5*01 HLA-A*02:01 B2M MHCI LLAGIGTVPI PGT HomoSapiens PMID:34811538 tetramer-sort yes amplicon-seq Naive T cells T1D T1D_1 chip0420_688259 PBMC +3360 CGPEEPNDYKLSF TRAV30*01 TRAJ20*01 CASSTGQLSNTGELFF TRBV9*01 TRBJ2-2*01 HLA-A*02:01 B2M MHCI GLCTLVAML BLMF1 EBV PMID:34811538 tetramer-sort yes amplicon-seq effector T cells T1D T1D_1 chip0420_113669 PBMC +3361 CSVGSRGTNEKLFF TRBV29-1*01 TRBJ1-4*01 HLA-A*02:01 B2M MHCI GLCTLVAML BLMF1 EBV PMID:34811538 tetramer-sort yes amplicon-seq effector T cells T1D T1D_1 chip0420_53752 PBMC +3363 CASSIRSAYEQYF TRBV19*01 TRBJ2-7*01 HLA-A*02:01 B2M MHCI GILGFVFTL M1 InfluenzaA PMID:34811538 tetramer-sort yes amplicon-seq transitional T cells between effector and memory populations T1D T1D_1 chip0420_706682 PBMC +3364 CALNTDKLIF TRAV8-1*01 TRAJ34*01 HLA-A*02:01 B2M MHCI YVLDHLIVV BRLF1 EBV PMID:34811538 tetramer-sort yes amplicon-seq effector T cells T1D T1D_2 chip0420_814291 PBMC +3365 CAISKSHFGHEKLTF TRAV12-3*01 TRAJ48*01 HLA-A*02:01 B2M MHCI LLAGIGTVPI PGT HomoSapiens PMID:34811538 tetramer-sort yes amplicon-seq Naive T cells T1D T1D_1 chip0420_228592 PBMC +3367 CSTHLRLVGVAEAFF TRBV29-1*01 TRBJ1-1*01 HLA-A*02:01 B2M MHCI LLAGIGTVPI PGT HomoSapiens PMID:34811538 tetramer-sort yes amplicon-seq Naive T cells T1D T1D_1 chip0420_299104 PBMC +3368 CVVNGRDSSYKLIS TRAV12-1*01 TRAJ12*01 CASSSGLVAPGELFF TRBV2*01 TRBJ2-2*01 HLA-A*02:01 B2M MHCI GLCTLVAML BLMF1 EBV PMID:34811538 tetramer-sort yes amplicon-seq effector T cells T1D T1D_2 chip0420_6453 PBMC +3369 CSVGTGGTNEKLFF TRBV29-1*01 TRBJ1-4*01 HLA-A*02:01 B2M MHCI GLCTLVAML BLMF1 EBV PMID:34811538 tetramer-sort yes amplicon-seq effector memory T cells T1D T1D_2 chip0420_723175 PBMC +3370 CASSTGQLSNTGELFF TRBV9*01 TRBJ2-2*01 HLA-A*02:01 B2M MHCI GLCTLVAML BLMF1 EBV PMID:34811538 tetramer-sort yes amplicon-seq effector memory T cells T1D T1D_1 chip0420_551558 PBMC +3372 CASSLQGGNYGYTF TRBV6-5*01 TRBJ1-2*01 HLA-A*02:01 B2M MHCI FLYALALLL LMP2 EBV PMID:34811538 tetramer-sort yes amplicon-seq central memory T cells T1D T1D_2 chip0420_763748 PBMC +3373 CGTEEPNDYKLSF TRAV30*01 TRAJ20*01 HLA-A*02:01 B2M MHCI GLCTLVAML BLMF1 EBV PMID:34811538 tetramer-sort yes amplicon-seq effector memory T cells T1D T1D_1 chip0420_700342 PBMC +3376 CVVNPFag??gaYSTLTF TRAV12-1*01 TRAJ11*01 CASSYMSGEAFF TRBV6-2*01,TRBV6-3*01 TRBJ1-1*01 HLA-A*02:01 B2M MHCI YVLDHLIVV BRLF1 EBV PMID:34811538 tetramer-sort yes amplicon-seq effector memory T cells T1D T1D_2 chip0420_711771 PBMC +3377 CASSSGLVAPGELFF TRBV2*01 TRBJ2-2*01 HLA-A*02:01 B2M MHCI GLCTLVAML BLMF1 EBV PMID:34811538 tetramer-sort yes amplicon-seq effector memory T cells T1D T1D_2 chip0420_124669 PBMC +3379 CAYRFRGF??tGSARQLTF TRAV38-2/DV8*01 TRAJ22*01 LCQ*FLg?gASGYTF TRBV19*01 TRBJ1-2*01 HLA-A*02:01 B2M MHCI GILGFVFTL M1 InfluenzaA PMID:34811538 tetramer-sort yes amplicon-seq transitional T cells between effector and memory populations T1D T1D_1 chip0420_508003 PBMC +3380 CSVGTGGTNEKLFF TRBV29-1*01 TRBJ1-4*01 HLA-A*02:01 B2M MHCI GLCTLVAML BLMF1 EBV PMID:34811538 tetramer-sort yes amplicon-seq effector memory T cells T1D T1D_2 chip0420_416649 PBMC +3382 CSVGSRGTNEKLFF TRBV29-1*01 TRBJ1-4*01 HLA-A*02:01 B2M MHCI GLCTLVAML BLMF1 EBV PMID:34811538 tetramer-sort yes amplicon-seq effector T cells T1D T1D_1 chip0420_225052 PBMC +3383 CALLGFSNTGKLIF TRAV19*01 TRAJ37*01 CASSLHLRQDEQPQHF TRBV28*01 TRBJ1-5*01 HLA-B*08:01 B2M MHCI QAKWRLQTL EBNA3A EBV PMID:34811538 tetramer-sort yes amplicon-seq effector memory T cells T1D T1D_3 chip0420_61281 PBMC +3385 CAMREGTGNFNKFYF TRAV14/DV4*01 TRAJ21*01 CASKGIDGYTF TRBV13*01 TRBJ1-2*01 HLA-A*02:01 B2M MHCI YVLDHLIVV BRLF1 EBV PMID:34811538 tetramer-sort yes amplicon-seq transitional T cells between effector and memory populations T1D T1D_2 chip0420_551045 PBMC +3387 CASSAGTVAPGELFF TRBV2*01 TRBJ2-2*01 HLA-A*02:01 B2M MHCI GLCTLVAML BLMF1 EBV PMID:34811538 tetramer-sort yes amplicon-seq effector memory T cells T1D T1D_1 chip0420_828544 PBMC +3389 CATEGASGYSTLTF TRAV17*01 TRAJ11*01 CASSVQGGNYGYTF TRBV6-1*01 TRBJ1-2*01 HLA-A*02:01 B2M MHCI FLYALALLL LMP2 EBV PMID:34811538 tetramer-sort yes amplicon-seq central memory T cells T1D T1D_1 chip0420_10858 PBMC +3390 CAVEPAYY??cSGTSYFIF TRAV2*01 TRAJ40*01 HLA-A*02:01 B2M MHCI FLYALALLL LMP2 EBV PMID:34811538 tetramer-sort yes amplicon-seq effector memory T cells T1D T1D_1 chip0420_875844 PBMC +3391 CASRGLAAAKNIQYF TRBV12-3*01,TRBV12-4*01 TRBJ2-4*01 HLA-A*02:01 B2M MHCI LLAGIGTVPI PGT HomoSapiens PMID:34811538 tetramer-sort yes amplicon-seq Naive T cells T1D T1D_1 chip0420_363019 PBMC +3392 CASCGGAVAPSEQFF TRBV2*01 TRBJ2-1*01 HLA-A*02:01 B2M MHCI GLCTLVAML BLMF1 EBV PMID:34811538 tetramer-sort yes amplicon-seq effector T cells T1D T1D_2 chip0420_647064 PBMC +3393 CALSTIKAAGNKLTF TRAV19*01 TRAJ17*01 HLA-A*01:01 B2M MHCI HSNLNDATY NP InfluenzaA PMID:34811538 tetramer-sort yes amplicon-seq Naive T cells T1D T1D_3 chip0420_563518 PBMC +3394 CASSPGDARGEQYF TRBV5-6*01 TRBJ2-7*01 HLA-A*02:01 B2M MHCI YLLEMLWRL LMP1 EBV PMID:34811538 tetramer-sort yes amplicon-seq central memory T cells T1D T1D_1 chip0420_79332 PBMC +3395 CVVNGRDSSYKLIF TRAV12-1*01 TRAJ12*01 CASSSGLVAPGELFF TRBV2*01 TRBJ2-2*01 HLA-A*02:01 B2M MHCI GLCTLVAML BLMF1 EBV PMID:34811538 tetramer-sort yes amplicon-seq effector memory T cells T1D T1D_2 chip0420_341910 PBMC +3397 CGTEEPNDYKLSF TRAV30*01 TRAJ20*01 CASSTGQLSNTGELFF TRBV9*01 TRBJ2-2*01 HLA-A*02:01 B2M MHCI GLCTLVAML BLMF1 EBV PMID:34811538 tetramer-sort yes amplicon-seq effector memory T cells T1D T1D_1 chip0420_731721 PBMC +3399 CVVNGRDSSYRLIF TRAV12-1*01 TRAJ12*01 HLA-A*02:01 B2M MHCI SLVALGINAV POL HCV PMID:34811538 tetramer-sort yes amplicon-seq transitional T cells between effector and memory populations T1D T1D_1 chip0420_834638 PBMC +3400 CSVGTGGTNEKLFF TRBV29-1*01 TRBJ1-4*01 HLA-A*02:01 B2M MHCI GLCTLVAML BLMF1 EBV PMID:34811538 tetramer-sort yes amplicon-seq effector T cells T1D T1D_2 chip0420_532814 PBMC +3401 CASSPVSGSTYEQYS TRBV3-1*01 TRBJ2-7*01 HLA-A*02:01 B2M MHCI GLCTLVAML BLMF1 EBV PMID:34811538 tetramer-sort yes amplicon-seq effector T cells T1D T1D_1 chip0420_863692 PBMC +3403 CSASRALDQPQHF TRBV20-1*01 TRBJ1-5*01 HLA-A*02:01 B2M MHCI YVLDHLIVV BRLF1 EBV PMID:34811538 tetramer-sort yes amplicon-seq transitional T cells between effector and memory populations healthy healthy_1 chip0420_305413 PBMC +3404 CASSFLEGTDTQYF TRBV28*01 TRBJ2-3*01 HLA-A*02:01 B2M MHCI YLLPRRGPRL POL HCV PMID:34811538 tetramer-sort yes amplicon-seq transitional T cells between effector and memory populations T1D T1D_1 chip0420_514422 PBMC +3405 CASSGRSTDTQYF TRBV19*01 TRBJ2-3*01 HLA-A*02:01 B2M MHCI GILGFVFTL M1 InfluenzaA PMID:34811538 tetramer-sort yes amplicon-seq transitional T cells between effector and memory populations healthy healthy_1 chip0420_867267 PBMC +3406 CASSINGGRRDGYTF TRBV19*01 TRBJ1-2*01 HLA-A*02:01 B2M MHCI GILGFVFTL M1 InfluenzaA PMID:34811538 tetramer-sort yes amplicon-seq transitional T cells between effector and memory populations T1D T1D_1 chip0420_480413 PBMC +3409 CVEHGEARTSHLIF TRAV12-1*01 TRAJ12*01 CASSEGRVSPGEAFF TRBV2*01 TRBJ1-1*01 HLA-A*02:01 B2M MHCI GLCTLVAML BLMF1 EBV PMID:34811538 tetramer-sort yes amplicon-seq effector memory T cells T1D T1D_1 chip0420_662414 PBMC +3411 CSVGTGGTNEKLFF TRBV29-1*01 TRBJ1-4*01 HLA-A*02:01 B2M MHCI GLCTLVAML BLMF1 EBV PMID:34811538 tetramer-sort yes amplicon-seq effector T cells T1D T1D_1 chip0420_324978 PBMC +3413 CVVNGEDSSYKLIF TRAV12-1*01 TRAJ12*01 CASSEGRVSPGEAFF TRBV2*01 TRBJ1-1*01 HLA-A*02:01 B2M MHCI GLCTLVAML BLMF1 EBV PMID:34811538 tetramer-sort yes amplicon-seq effector memory T cells T1D T1D_1 chip0420_143744 PBMC +3414 CSVGTGGTNEKLFF TRBV29-1*01 TRBJ1-4*01 HLA-A*02:01 B2M MHCI GLCTLVAML BLMF1 EBV PMID:34811538 tetramer-sort yes amplicon-seq effector memory T cells T1D T1D_2 chip0420_701080 PBMC +3415 CAVDP*GNQFSF TRAV39*01 TRAJ49*01 CATQQGRDSQPQHF TRBV28*01 TRBJ1-5*01 HLA-A*02:01 B2M MHCI GLCTLVAML BLMF1 EBV PMID:34811538 tetramer-sort yes amplicon-seq effector memory T cells T1D T1D_1 chip0420_692534 PBMC +3416 CSVGTGGTNEKLFF TRBV29-1*01 TRBJ1-4*01 HLA-A*02:01 B2M MHCI GLCTLVAML BLMF1 EBV PMID:34811538 tetramer-sort yes amplicon-seq effector memory T cells T1D T1D_2 chip0420_466882 PBMC +3417 CASSSGGNVDTQYF TRBV7-3*01 TRBJ2-3*01 HLA-A*02:01 B2M MHCI GLCTLVAML BLMF1 EBV PMID:34811538 tetramer-sort yes amplicon-seq effector memory T cells T1D T1D_1 chip0420_111524 PBMC +3418 CASSPVSGSTYEQYF TRBV3-1*01 TRBJ2-7*01 HLA-A*02:01 B2M MHCI GLCTLVAML BLMF1 EBV PMID:34811538 tetramer-sort yes amplicon-seq effector memory T cells T1D T1D_1 chip0420_859055 PBMC +3419 CAVNGGGYNKLIF TRAV12-2*01 TRAJ4*01 HLA-A*02:01 B2M MHCI GLCTLVAML BLMF1 EBV PMID:34811538 tetramer-sort yes amplicon-seq effector memory T cells T1D T1D_1 chip0420_778466 PBMC +3420 CAVMNYGGSQGNLIF TRAV12-2*01 TRAJ42*01 CASSDSYTEAFF TRBV28*01 TRBJ1-1*01 HLA-A*02:01 B2M MHCI YLLPGWKL VP3 RotavirusA PMID:34811538 tetramer-sort yes amplicon-seq Naive T cells T1D T1D_1 chip0420_807697 PBMC +3421 CALYNTDKLIF TRAV9-2*01 TRAJ34*01 CASSPVSGSTYEQYF TRBV3-1*01 TRBJ2-7*01 HLA-A*02:01 B2M MHCI GLCTLVAML BLMF1 EBV PMID:34811538 tetramer-sort yes amplicon-seq effector memory T cells T1D T1D_1 chip0420_793797 PBMC +3422 CASSAGQGLPYEQYF TRBV5-1*01 TRBJ2-7*01 HLA-A*02:01 B2M MHCI GILGFVFTL M1 InfluenzaA PMID:34811538 tetramer-sort yes amplicon-seq transitional T cells between effector and memory populations healthy healthy_1 chip0420_382462 PBMC +3423 CAVVSNSGYALNF TRAV12-2*01 TRAJ41*01 CASSSGGNVDTQYF TRBV7-3*01 TRBJ2-3*01 HLA-A*02:01 B2M MHCI GLCTLVAML BLMF1 EBV PMID:34811538 tetramer-sort yes amplicon-seq effector T cells T1D T1D_1 chip0420_766789 PBMC +3424 CASSSGLVAPGELFF TRBV2*01 TRBJ2-2*01 HLA-A*02:01 B2M MHCI GLCTLVAML BLMF1 EBV PMID:34811538 tetramer-sort yes amplicon-seq effector memory T cells T1D T1D_2 chip0420_883671 PBMC +3426 CSAVTGGGGTEAFF TRBV20-1*01 TRBJ1-1*01 HLA-A*02:01 B2M MHCI ALAGIGILTV MART1 HomoSapiens PMID:34811538 tetramer-sort yes amplicon-seq central memory T cells T1D T1D_2 chip0420_751528 PBMC +3427 CASSIYGSYEQYF TRBV19*01 TRBJ2-7*01 HLA-A*02:01 B2M MHCI GILGFVFTL M1 InfluenzaA PMID:34811538 tetramer-sort yes amplicon-seq transitional T cells between effector and memory populations healthy healthy_1 chip0420_609217 PBMC +3432 CAASGGSQGNLIF TRAV29/DV5*01 TRAJ42*01 CSSQEGGYGYTF TRBV29-1*01 TRBJ1-2*01 HLA-A*02:01 B2M MHCI GLCTLVAML BLMF1 EBV PMID:34811538 tetramer-sort yes amplicon-seq effector T cells T1D T1D_2 chip0420_445892 PBMC +3433 CASSEGMISNQPQHF TRBV2*01 TRBJ1-5*01 HLA-A*02:01 B2M MHCI LLAGIGTVPI PGT HomoSapiens PMID:34811538 tetramer-sort yes amplicon-seq Naive T cells healthy healthy_2 chip0420_118552 PBMC +3434 CASSSGLVAPGELFF TRBV2*01 TRBJ2-2*01 HLA-A*02:01 B2M MHCI GLCTLVAML BLMF1 EBV PMID:34811538 tetramer-sort yes amplicon-seq effector memory T cells T1D T1D_2 chip0420_526357 PBMC +3435 CASSINHRGIIEQFF TRBV19*01 TRBJ2-1*01 HLA-A*02:01 B2M MHCI LLAGIGTVPI PGT HomoSapiens PMID:34811538 tetramer-sort yes amplicon-seq Naive T cells T1D T1D_1 chip0420_491686 PBMC +3436 CASSSGLVAPGELFF TRBV2*01 TRBJ2-2*01 HLA-A*02:01 B2M MHCI GLCTLVAML BLMF1 EBV PMID:34811538 tetramer-sort yes amplicon-seq effector T cells T1D T1D_2 chip0420_401178 PBMC +3437 CAGYSGGSNYKLTF TRAV39*01 TRAJ53*01 HLA-A*02:01 B2M MHCI GIIYIIYKL P3A CoxsackievirusB PMID:34811538 tetramer-sort yes amplicon-seq Naive T cells T1D T1D_1 chip0420_839317 PBMC +3441 CAVDPWGNQFYF TRAV39*01 TRAJ49*01 CATQQGRDSQPQHF TRBV28*01 TRBJ1-5*01 HLA-A*02:01 B2M MHCI GLCTLVAML BLMF1 EBV PMID:34811538 tetramer-sort yes amplicon-seq effector memory T cells T1D T1D_1 chip0420_675784 PBMC +3442 CASSWTGTDDTEAFF TRBV13*01 TRBJ1-1*01 HLA-A*02:01 B2M MHCI PLTFGWCYKL NEF InfluenzaA PMID:34811538 tetramer-sort yes amplicon-seq Naive T cells T1D T1D_1 chip0420_622169 PBMC +3445 CASSYLGVEGYTF TRBV6-5*01 TRBJ1-2*01 HLA-A*02:01 B2M MHCI GILGFVFTL M1 InfluenzaA PMID:34811538 tetramer-sort yes amplicon-seq transitional T cells between effector and memory populations T1D T1D_1 chip0420_138547 PBMC +3448 CATQQGRDSQPQHF TRBV28*01 TRBJ1-5*01 HLA-A*02:01 B2M MHCI GLCTLVAML BLMF1 EBV PMID:34811538 tetramer-sort yes amplicon-seq effector memory T cells T1D T1D_1 chip0420_545135 PBMC +3449 CSVGTGGTNEKLFF TRBV29-1*01 TRBJ1-4*01 HLA-A*02:01 B2M MHCI GLCTLVAML BLMF1 EBV PMID:34811538 tetramer-sort yes amplicon-seq effector memory T cells T1D T1D_2 chip0420_127817 PBMC +3450 CAMSISNFGNEKLTF TRAV12-3*01 TRAJ48*01 CASSDTGTSGFEAKNIQYF TRBV9*01 TRBJ2-4*01 HLA-A*02:01 B2M MHCI LLAGIGTVPI PGT HomoSapiens PMID:34811538 tetramer-sort yes amplicon-seq Naive T cells T1D T1D_1 chip0420_34704 PBMC +3451 CASSFRVGEGTGELFF TRBV7-6*01 TRBJ2-2*01 HLA-B*08:01 B2M MHCI RAKFKQLL BZLF1 EBV PMID:34811538 tetramer-sort yes amplicon-seq effector memory T cells healthy healthy_2 chip0420_614105 PBMC +3452 CASSSGQVLPNEQFF TRBV2*01 TRBJ2-1*01 HLA-A*02:01 B2M MHCI GLCTLVAML BLMF1 EBV PMID:34811538 tetramer-sort yes amplicon-seq effector T cells T1D T1D_1 chip0420_572682 PBMC +3453 CASSTSTGGLAEAFF TRBV11-1*01 TRBJ1-1*01 HLA-A*02:01 B2M MHCI LLAGIGTVPI PGT HomoSapiens PMID:34811538 tetramer-sort yes amplicon-seq Naive T cells T1D T1D_1 chip0420_719043 PBMC +3454 CAATFYTGTASKLTF TRAV8-1*01 TRAJ44*01 HLA-A*02:01 B2M MHCI YLLEMLWRL LMP1 EBV PMID:34811538 tetramer-sort yes amplicon-seq transitional T cells between effector and memory populations T1D T1D_2 chip0420_742819 PBMC +3455 CILRDGQGAQKLVF TRAV26-2*01 TRAJ54*01 HLA-A*02:01 B2M MHCI LLAGIGTVPI PGT HomoSapiens PMID:34811538 tetramer-sort yes amplicon-seq Naive T cells T1D T1D_1 chip0420_534503 PBMC +3457 CASSIYGGSGEAFF TRBV19*01 TRBJ1-1*01 HLA-A*02:01 B2M MHCI GILGFVFTL M1 InfluenzaA PMID:34811538 tetramer-sort yes amplicon-seq transitional T cells between effector and memory populations T1D T1D_1 chip0420_555526 PBMC +3460 CASSYRDKSAGNTIYF TRBV28*01 TRBJ1-3*01 HLA-A*02:01 B2M MHCI GILGFVFTL M1 InfluenzaA PMID:34811538 tetramer-sort yes amplicon-seq transitional T cells between effector and memory populations T1D T1D_1 chip0420_725379 PBMC +3461 CAVSDRGGWGAQKLVF TRAV8-4*01 TRAJ54*01 HLA-A*02:01 B2M MHCI RGPGRAFVTI GP160 HIV-1 PMID:34811538 tetramer-sort yes amplicon-seq Naive T cells T1D T1D_1 chip0420_778173 PBMC +3462 CASTEYTGELFF TRBV28*01 TRBJ2-2*01 HLA-A*02:01 B2M MHCI LLAGIGTVPI PGT HomoSapiens PMID:34811538 tetramer-sort yes amplicon-seq Naive T cells T1D T1D_1 chip0420_665822 PBMC +3464 CASSTGQLSNTGELFF TRBV9*01 TRBJ2-2*01 HLA-A*02:01 B2M MHCI GLCTLVAML BLMF1 EBV PMID:34811538 tetramer-sort yes amplicon-seq effector memory T cells T1D T1D_1 chip0420_517648 PBMC +3465 CVVIHYNQGGKLIF TRAV12-1*01 TRAJ23*01 CASSHALENTGELFF TRBV3-1*01 TRBJ2-2*01 HLA-A*02:01 B2M MHCI YVLDHLIVV BRLF1 EBV PMID:34811538 tetramer-sort yes amplicon-seq effector T cells T1D T1D_2 chip0420_760288 PBMC +3468 CASGTLAGAGQTQYF TRBV3-1*01 TRBJ2-5*01 HLA-A*02:01 B2M MHCI YVLDHLIVV BRLF1 EBV PMID:34811538 tetramer-sort yes amplicon-seq effector memory T cells T1D T1D_2 chip0420_106948 PBMC +3469 CASSEGRVSPGEAFF TRAV14/DV4*01 TRAJ40*01 CASSEGRVSPGEAFF TRBV2*01 TRBJ1-1*01 HLA-A*02:01 B2M MHCI GLCTLVAML BLMF1 EBV PMID:34811538 tetramer-sort yes amplicon-seq effector memory T cells T1D T1D_1 chip0420_169170 PBMC +3471 CAGRLYRFNKLYF TRAV27*01 TRAJ21*01 CASSFAPRDQLTTEAFF TRBV5-1*01 TRBJ1-1*01 HLA-A*02:01 B2M MHCI GLCTLVAML BLMF1 EBV PMID:34811538 tetramer-sort yes amplicon-seq effector memory T cells T1D T1D_2 chip0420_264360 PBMC +3472 CASSYPTct?AAYNEQFF TRBV6-5*01 TRBJ2-1*01 HLA-A*02:01 B2M MHCI GLCTLVAML BLMF1 EBV PMID:34811538 tetramer-sort yes amplicon-seq effector memory T cells T1D T1D_1 chip0420_631953 PBMC +3473 CAVGTGGADGLTF TRAV12-2*01 TRAJ45*01 CAISGSPGGNYGYTF TRBV10-3*01 TRBJ1-2*01 HLA-A*02:01 B2M MHCI LLAGIGTVPI PGT HomoSapiens PMID:34811538 tetramer-sort yes amplicon-seq effector memory T cells T1D T1D_2 chip0420_546742 PBMC +3474 CASRAGAGDTQYF TRBV10-2*01 TRBJ2-3*01 HLA-A*02:01 B2M MHCI GLCTLVAML BLMF1 EBV PMID:34811538 tetramer-sort yes amplicon-seq effector T cells T1D T1D_2 chip0420_495391 PBMC +3476 CASSINGGRRDGYTF TRBV19*01 TRBJ1-2*01 HLA-A*02:01 B2M MHCI GILGFVFTL M1 InfluenzaA PMID:34811538 tetramer-sort yes amplicon-seq transitional T cells between effector and memory populations T1D T1D_1 chip0420_624704 PBMC +3477 CAVKDTDKLIF TRAV8-1*01 TRAJ34*01 HLA-A*02:01 B2M MHCI YVLDHLIVV BRLF1 EBV PMID:34811538 tetramer-sort yes amplicon-seq effector T cells T1D T1D_2 chip0420_420782 PBMC +3479 CSVETMQLSNYGYTF TRBV29-1*01 TRBJ1-2*01 HLA-A*02:01 B2M MHCI RGPGRAFVTI GP160 HIV-1 PMID:34811538 tetramer-sort yes amplicon-seq Naive T cells T1D T1D_1 chip0420_716245 PBMC +3480 CASSPVSGSTYEQYF TRBV3-1*01 TRBJ2-7*01 HLA-A*02:01 B2M MHCI GLCTLVAML BLMF1 EBV PMID:34811538 tetramer-sort yes amplicon-seq effector memory T cells T1D T1D_1 chip0420_523601 PBMC +3481 CASSRQGGKDGYTF TRBV6-1*01 TRBJ1-2*01 HLA-A*02:01 B2M MHCI FLYALALLL LMP2 EBV PMID:34811538 tetramer-sort yes amplicon-seq central memory T cells T1D T1D_2 chip0420_22056 PBMC +3482 CASSRREGLRTQYF TRBV28*01 TRBJ2-5*01 HLA-A*02:01 B2M MHCI LLAGIGTVPI PGT HomoSapiens PMID:34811538 tetramer-sort yes amplicon-seq Naive T cells T1D T1D_1 chip0420_769457 PBMC +3484 CASSPSTSGSGETQYF TRBV3-1*01 TRBJ2-5*01 HLA-A*02:01 B2M MHCI YVLDHLIVV BRLF1 EBV PMID:34811538 tetramer-sort yes amplicon-seq effector memory T cells T1D T1D_2 chip0420_831545 PBMC +3487 CASSPDQTSSYNEQFF TRBV27*01 TRBJ2-1*01 HLA-A*02:01 B2M MHCI YVLDHLIVV BRLF1 EBV PMID:34811538 tetramer-sort yes amplicon-seq effector memory T cells T1D T1D_1 chip0420_90241 PBMC +3488 CASSPDQTSSYNEQFF TRBV27*01 TRBJ2-1*01 HLA-A*02:01 B2M MHCI YVLDHLIVV BRLF1 EBV PMID:34811538 tetramer-sort yes amplicon-seq effector memory T cells T1D T1D_1 chip0420_467719 PBMC +3489 CAASNAGNNRKLIW TRAV13-1*01 TRAJ38*01 HLA-A*02:01 B2M MHCI GLCTLVAML BLMF1 EBV PMID:34811538 tetramer-sort yes amplicon-seq effector memory T cells T1D T1D_1 chip0420_540796 PBMC +3490 CVVNVTYNFNKFYF TRAV12-1*01 TRAJ21*01 CASSAGTVAPGELFF TRBV2*01 TRBJ2-2*01 HLA-A*02:01 B2M MHCI GLCTLVAML BLMF1 EBV PMID:34811538 tetramer-sort yes amplicon-seq effector T cells T1D T1D_1 chip0420_409966 PBMC +3491 CSVGSRGTNEKLFF TRBV29-1*01 TRBJ1-4*01 HLA-A*02:01 B2M MHCI GLCTLVAML BLMF1 EBV PMID:34811538 tetramer-sort yes amplicon-seq effector memory T cells T1D T1D_1 chip0420_380354 PBMC +3492 CAAALIQGAQKLVF TRAV39*01 TRAJ54*01 HLA-A*02:01 B2M MHCI YLVALGINAV POL HCV PMID:34811538 tetramer-sort yes amplicon-seq natural killer-like T cells T1D T1D_1 chip0420_530647 PBMC +3494 CASSVRAGETQYF TRBV19*01 TRBJ2-5*01 HLA-A*02:01 B2M MHCI GILGFVFTL M1 InfluenzaA PMID:34811538 tetramer-sort yes amplicon-seq transitional T cells between effector and memory populations T1D T1D_1 chip0420_403853 PBMC +3495 CSVGTGGTNEKLFF TRBV29-1*01 TRBJ1-4*01 HLA-A*02:01 B2M MHCI GLCTLVAML BLMF1 EBV PMID:34811538 tetramer-sort yes amplicon-seq effector memory T cells T1D T1D_2 chip0420_37361 PBMC +3496 CASKEAGALFF TRBV6-1*01 TRBJ2-2*01 HLA-A*02:01 B2M MHCI GLCTLVAML BLMF1 EBV PMID:34811538 tetramer-sort yes amplicon-seq effector memory T cells T1D T1D_1 chip0420_423463 PBMC +3497 CASSPHSGAAAEQYF TRBV19*01 TRBJ2-7*01 HLA-A*02:01 B2M MHCI YVLDHLIVV BRLF1 EBV PMID:34811538 tetramer-sort yes amplicon-seq effector T cells T1D T1D_1 chip0420_474297 PBMC +3498 CSVDQRTGQKKNYGYTF TRBV29-1*01 TRBJ1-2*01 HLA-A*02:01 B2M MHCI GLCTLVAML BLMF1 EBV PMID:34811538 tetramer-sort yes amplicon-seq effector T cells T1D T1D_2 chip0420_805657 PBMC +3501 CSVGSRGTNEKLFF TRBV29-1*01 TRBJ1-4*01 HLA-A*02:01 B2M MHCI GLCTLVAML BLMF1 EBV PMID:34811538 tetramer-sort yes amplicon-seq effector memory T cells T1D T1D_1 chip0420_127396 PBMC +3502 CASSSGQVLPNEQFF TRBV2*01 TRBJ2-1*01 HLA-A*02:01 B2M MHCI GLCTLVAML BLMF1 EBV PMID:34811538 tetramer-sort yes amplicon-seq effector memory T cells T1D T1D_1 chip0420_62148 PBMC +3503 CASSPARTCSYNEQFF TRBV27*01 TRBJ2-1*01 HLA-A*02:01 B2M MHCI YVLDHLIVV BRLF1 EBV PMID:34811538 tetramer-sort yes amplicon-seq effector memory T cells T1D T1D_1 chip0420_27886 PBMC +3504 CSASEPGTGLGEQYF TRBV20-1*01 TRBJ2-7*01 HLA-A*02:01 B2M MHCI LLAGIGTVPI PGT HomoSapiens PMID:34811538 tetramer-sort yes amplicon-seq Naive T cells healthy healthy_1 chip0420_296576 PBMC +3506 CASSPDQTSSYNEQFF TRBV27*01 TRBJ2-1*01 HLA-A*02:01 B2M MHCI YVLDHLIVV BRLF1 EBV PMID:34811538 tetramer-sort yes amplicon-seq effector memory T cells T1D T1D_1 chip0420_70853 PBMC +3507 CSVGTGGTNEKLFF TRBV29-1*01 TRBJ1-4*01 HLA-A*02:01 B2M MHCI GLCTLVAML BLMF1 EBV PMID:34811538 tetramer-sort yes amplicon-seq effector memory T cells T1D T1D_2 chip0420_545394 PBMC +3508 CASRAGAGDTQYF TRBV10-2*01 TRBJ2-3*01 HLA-A*02:01 B2M MHCI GLCTLVAML BLMF1 EBV PMID:34811538 tetramer-sort yes amplicon-seq effector T cells T1D T1D_2 chip0420_7488 PBMC +3509 CSVGGSFYGYTF TRBV29-1*01 TRBJ1-2*01 HLA-A*02:01 B2M MHCI GLCTLVAML BLMF1 EBV PMID:34811538 tetramer-sort yes amplicon-seq effector memory T cells tet_neg chip0420_396801 PBMC +3512 CASRLGAGDTQYF TRBV10-2*01 TRBJ2-3*01 HLA-A*02:01 B2M MHCI GLCTLVAML BLMF1 EBV PMID:34811538 tetramer-sort yes amplicon-seq effector memory T cells T1D T1D_2 chip0420_155877 PBMC +3513 CASSSSDGDWGANVLTF TRBV12-3*01,TRBV12-4*01 TRBJ2-6*01 HLA-A*02:01 B2M MHCI LLAGIGTVPI PGT HomoSapiens PMID:34811538 tetramer-sort yes amplicon-seq Naive T cells T1D T1D_1 chip0420_384989 PBMC +3514 CASSQSRGSLWDTQYF TRBV4-3*01 TRBJ2-3*01 HLA-A*02:01 B2M MHCI YVLDHLIVV BRLF1 EBV PMID:34811538 tetramer-sort yes amplicon-seq effector T cells T1D T1D_2 chip0420_736041 PBMC +3515 CASSWDRGRTEAFF TRBV6-2*01,TRBV6-3*01 TRBJ1-1*01 HLA-B*08:01 B2M MHCI YAYAKWKL ZNT8 HomoSapiens PMID:34811538 tetramer-sort yes amplicon-seq Naive T cells T1D T1D_3 chip0420_267199 PBMC +3516 CSVGTGGTKEKLFF TRBV29-1*01 TRBJ1-4*01 HLA-A*02:01 B2M MHCI GLCTLVAML BLMF1 EBV PMID:34811538 tetramer-sort yes amplicon-seq effector memory T cells T1D T1D_2 chip0420_592157 PBMC +3519 CASSIRSSYEQYF TRBV19*01 TRBJ2-7*01 HLA-A*02:01 B2M MHCI GILGFVFTL M1 InfluenzaA PMID:34811538 tetramer-sort yes amplicon-seq transitional T cells between effector and memory populations healthy healthy_1 chip0420_707535 PBMC +3520 CASSSPTGEGSEAFF TRBV12-3*01,TRBV12-4*01 TRBJ1-1*01 HLA-A*02:01 B2M MHCI LLAGIGTVPI PGT HomoSapiens PMID:34811538 tetramer-sort yes amplicon-seq Naive T cells healthy healthy_1 chip0420_448315 PBMC +3521 CAVKDTDKLIF TRAV8-1*01 TRAJ34*01 CASSALLGSNQPQHF TRBV6-1*01 TRBJ1-5*01 HLA-A*02:01 B2M MHCI YVLDHLIVV BRLF1 EBV PMID:34811538 tetramer-sort yes amplicon-seq effector memory T cells T1D T1D_2 chip0420_609136 PBMC +3522 CASSTGQLSNTGELFF TRBV9*01 TRBJ2-2*01 HLA-A*02:01 B2M MHCI GLCTLVAML BLMF1 EBV PMID:34811538 tetramer-sort yes amplicon-seq effector T cells T1D T1D_1 chip0420_501999 PBMC +3524 CASSFVSRGTGELFF TRBV5-6*01 TRBJ2-2*01 HLA-A*02:01 B2M MHCI LLAGIGTVPI PGT HomoSapiens PMID:34811538 tetramer-sort yes amplicon-seq Naive T cells T1D T1D_1 chip0420_855394 PBMC +3528 CASSIRSSYEQYF TRBV19*01 TRBJ2-7*01 HLA-A*02:01 B2M MHCI GILGFVFTL M1 InfluenzaA PMID:34811538 tetramer-sort yes amplicon-seq transitional T cells between effector and memory populations healthy healthy_1 chip0420_832329 PBMC +3530 CVVNRRDSSYKLIF TRAV12-1*01 TRAJ12*01 CASSDGRVHPGTQYF TRBV2*01 TRBJ2-5*01 HLA-A*02:01 B2M MHCI GLCTLVAML BLMF1 EBV PMID:34811538 tetramer-sort yes amplicon-seq effector memory T cells T1D T1D_1 chip0420_464420 PBMC +3532 CALGGLTF TRAV8-1*01 TRAJ22*01 CASSPSTSGSGETQYF TRBV3-1*01 TRBJ2-5*01 HLA-A*02:01 B2M MHCI YVLDHLIVV BRLF1 EBV PMID:34811538 tetramer-sort yes amplicon-seq effector memory T cells T1D T1D_2 chip0420_744617 PBMC +3534 CSGPPGTF TRBV20-1*01 TRBJ1-2*01 HLA-A*02:01 B2M MHCI LLAGIGTVPI PGT HomoSapiens PMID:34811538 tetramer-sort yes amplicon-seq Naive T cells T1D T1D_1 chip0420_735614 PBMC +3535 CAASGGRHGTLLF TRAV29/DV5*01 TRAJ42*01 CSSQEGGYGYTF TRBV29-1*01 TRBJ1-2*01 HLA-A*02:01 B2M MHCI GLCTLVAML BLMF1 EBV PMID:34811538 tetramer-sort yes amplicon-seq effector memory T cells T1D T1D_2 chip0420_250784 PBMC +3538 CAVTATDKLIF TRAV8-1*01 TRAJ34*01 CASSLPGLNYGYTF TRBV19*01 TRBJ1-2*01 HLA-A*02:01 B2M MHCI YVLDHLIVV BRLF1 EBV PMID:34811538 tetramer-sort yes amplicon-seq effector memory T cells T1D T1D_2 chip0420_537498 PBMC +3539 CGPEEPNDYKLSF TRAV30*01 TRAJ20*01 HLA-A*02:01 B2M MHCI GLCTLVAML BLMF1 EBV PMID:34811538 tetramer-sort yes amplicon-seq effector T cells T1D T1D_1 chip0420_707637 PBMC +3540 CSVGSRGTNEKLFF TRBV29-1*01 TRBJ1-4*01 HLA-A*02:01 B2M MHCI GLCTLVAML BLMF1 EBV PMID:34811538 tetramer-sort yes amplicon-seq effector memory T cells T1D T1D_1 chip0420_297492 PBMC +3541 CASQTQGLAGTDTQYF TRBV6-1*01 TRBJ2-3*01 HLA-A*02:01 B2M MHCI LLAGIGTVPI PGT HomoSapiens PMID:34811538 tetramer-sort yes amplicon-seq Naive T cells T1D T1D_1 chip0420_159625 PBMC +3542 CASSYSYEQYF TRBV6-1*01 TRBJ2-7*01 HLA-A*02:01 B2M MHCI TLLANVTAV VP6 RotavirusA PMID:34811538 tetramer-sort yes amplicon-seq transitional T cells between effector and memory populations healthy healthy_2 chip0420_677940 PBMC +3543 CAEKAWgg??gtYQKVTF TRAV5*01 TRAJ13*01 CSVGTGGTNEKLFF TRBV29-1*01 TRBJ1-4*01 HLA-A*02:01 B2M MHCI GLCTLVAML BLMF1 EBV PMID:34811538 tetramer-sort yes amplicon-seq effector memory T cells T1D T1D_2 chip0420_632257 PBMC +3545 CSVGTGGTNEKLFF TRBV29-1*01 TRBJ1-4*01 HLA-A*02:01 B2M MHCI GLCTLVAML BLMF1 EBV PMID:34811538 tetramer-sort yes amplicon-seq effector memory T cells T1D T1D_2 chip0420_467094 PBMC +3547 CAGAGSQGNLIF TRAV27*01 TRAJ42*01 CASSTRSSYEQYF TRBV19*01 TRBJ2-7*01 HLA-A*02:01 B2M MHCI GILGFVFTL M1 InfluenzaA PMID:34811538 tetramer-sort yes amplicon-seq transitional T cells between effector and memory populations healthy healthy_1 chip0420_861675 PBMC +3548 CATQQGRDSQPQHF TRBV28*01 TRBJ1-5*01 HLA-A*02:01 B2M MHCI GLCTLVAML BLMF1 EBV PMID:34811538 tetramer-sort yes amplicon-seq effector memory T cells T1D T1D_1 chip0420_794941 PBMC +3549 CSVGSRGTNEKLFF TRBV29-1*01 TRBJ1-4*01 HLA-A*02:01 B2M MHCI GLCTLVAML BLMF1 EBV PMID:34811538 tetramer-sort yes amplicon-seq effector memory T cells T1D T1D_1 chip0420_718708 PBMC +3550 CASNLTGNNEQFF TRBV9*01 TRBJ2-1*01 HLA-A*02:01 B2M MHCI GLCTLVAML BLMF1 EBV PMID:34811538 tetramer-sort yes amplicon-seq effector memory T cells T1D T1D_2 chip0420_863754 PBMC +3551 CASSMMTREKPFF TRBV19*01 TRBJ1-4*01 HLA-A*02:01 B2M MHCI YVLDHLIVV BRLF1 EBV PMID:34811538 tetramer-sort yes amplicon-seq effector memory T cells T1D T1D_1 chip0420_325557 PBMC +3552 CSASRALEQPQHF TRBV20-1*01 TRBJ1-5*01 HLA-A*02:01 B2M MHCI YVLDHLIVV BRLF1 EBV PMID:34811538 tetramer-sort yes amplicon-seq effector memory T cells healthy healthy_1 chip0420_794374 PBMC +3553 CASRRDGTEAFF TRBV30*01 TRBJ1-1*01 HLA-A*02:01 B2M MHCI GIIYIIYKL P3A CoxsackievirusB PMID:34811538 tetramer-sort yes amplicon-seq central memory T cells T1D T1D_1 chip0420_609846 PBMC +3554 CASSLTLISGDSYNEQFF TRBV7-3*01 TRBJ2-1*01 HLA-B*08:01 B2M MHCI RAKFKQLL BZLF1 EBV PMID:34811538 tetramer-sort yes amplicon-seq effector memory T cells T1D T1D_3 chip0420_167377 PBMC +3555 CGPEEPNDYKLSF TRAV30*01 TRAJ20*01 CSVEGGGYNEQFF TRBV29-1*01 TRBJ2-1*01 HLA-A*02:01 B2M MHCI GLCTLVAML BLMF1 EBV PMID:34811538 tetramer-sort yes amplicon-seq effector memory T cells T1D T1D_1 chip0420_152598 PBMC +3556 CAGSGGPHTGTENNEQFF TRBV11-3*01 TRBJ2-1*01 HLA-A*02:01 B2M MHCI VMNILLQYV GAD65 HomoSapiens PMID:34811538 tetramer-sort yes amplicon-seq Naive T cells healthy healthy_2 chip0420_585119 PBMC +3557 CASSQDEGGAEAFF TRBV4-1*01 TRBJ1-1*01 HLA-A*02:01 B2M MHCI ILGALLSIL ZNT8 HomoSapiens PMID:34811538 tetramer-sort yes amplicon-seq Naive T cells T1D T1D_2 chip0420_398802 PBMC +3558 CVVNRGTHNFNKFYL TRAV12-1*01 TRAJ21*01 HLA-A*02:01 B2M MHCI RLLYPDYQI ZNT8 HomoSapiens PMID:34811538 tetramer-sort yes amplicon-seq Naive T cells T1D T1D_1 chip0420_805143 PBMC +3559 CALYNTDKLIF TRAV9-2*01 TRAJ34*01 HLA-A*02:01 B2M MHCI GLCTLVAML BLMF1 EBV PMID:34811538 tetramer-sort yes amplicon-seq effector T cells T1D T1D_1 chip0420_252708 PBMC +3560 CASSYSGDTEAFF TRBV6-5*01 TRBJ1-1*01 HLA-A*02:01 B2M MHCI LLAGIGTVPI PGT HomoSapiens PMID:34811538 tetramer-sort yes amplicon-seq Naive T cells healthy healthy_1 chip0420_90696 PBMC +3561 CAVALGAEg?cSTLGRLYF TRAV36/DV7*01 TRAJ18*01 HLA-A*02:01 B2M MHCI YVLDHLIVV BRLF1 EBV PMID:34811538 tetramer-sort yes amplicon-seq effector T cells T1D T1D_2 chip0420_661485 PBMC +3562 CASSTGQLSNSGELFF TRBV9*01 TRBJ2-2*01 HLA-A*02:01 B2M MHCI GLCTLVAML BLMF1 EBV PMID:34811538 tetramer-sort yes amplicon-seq effector T cells T1D T1D_1 chip0420_380034 PBMC +3564 CASRGLYGYTF TRBV13*01 TRBJ1-2*01 HLA-A*02:01 B2M MHCI YLLPGWKL VP3 RotavirusA PMID:34811538 tetramer-sort yes amplicon-seq Naive T cells T1D T1D_1 chip0420_311684 PBMC +3565 CSVGTGGTNEKLFF TRBV29-1*01 TRBJ1-4*01 HLA-A*02:01 B2M MHCI GLCTLVAML BLMF1 EBV PMID:34811538 tetramer-sort yes amplicon-seq effector memory T cells T1D T1D_2 chip0420_1368 PBMC +3566 CARSVASLASYEQYF TRBV9*01 TRBJ2-7*01 HLA-B*08:01 B2M MHCI FQQDKHYDL GAD2 HomoSapiens PMID:34811538 tetramer-sort yes amplicon-seq Naive T cells healthy healthy_2 chip0420_769670 PBMC +3567 CASSSGLVAPGELFF TRBV2*01 TRBJ2-2*01 HLA-A*02:01 B2M MHCI GLCTLVAML BLMF1 EBV PMID:34811538 tetramer-sort yes amplicon-seq effector memory T cells T1D T1D_2 chip0420_245382 PBMC +3568 CGTEEPNDYKLSF TRAV30*01 TRAJ20*01 CASSTGQLSNTGELFF TRBV9*01 TRBJ2-2*01 HLA-A*02:01 B2M MHCI GLCTLVAML BLMF1 EBV PMID:34811538 tetramer-sort yes amplicon-seq effector T cells T1D T1D_1 chip0420_745778 PBMC +3572 CSVGTGGTNEKLFF TRBV29-1*01 TRBJ1-4*01 HLA-A*02:01 B2M MHCI GLCTLVAML BLMF1 EBV PMID:34811538 tetramer-sort yes amplicon-seq effector T cells T1D T1D_2 chip0420_192742 PBMC +3573 CAESTSGGKLIF TRAV5*01 TRAJ23*01 CSVGTGGTNEKLFF TRBV29-1*01 TRBJ1-4*01 HLA-A*02:01 B2M MHCI GLCTLVAML BLMF1 EBV PMID:34811538 tetramer-sort yes amplicon-seq effector memory T cells T1D T1D_2 chip0420_318732 PBMC +3574 CAVRDTG??cRTYKYIF TRAV8-6*01 TRAJ40*01 CASSPDQTSSYNEQFF TRBV27*01 TRBJ2-1*01 HLA-A*02:01 B2M MHCI YVLDHLIVV BRLF1 EBV PMID:34811538 tetramer-sort yes amplicon-seq effector memory T cells T1D T1D_1 chip0420_876992 PBMC +3576 CAVGTGGADGLTF TRAV12-2*01 TRAJ45*01 CAISGSPGGNYGYTF TRBV10-3*01 TRBJ1-2*01 HLA-A*02:01 B2M MHCI LLAGIGTVPI PGT HomoSapiens PMID:34811538 tetramer-sort yes amplicon-seq effector T cells T1D T1D_2 chip0420_742619 PBMC +3578 CSVGGSFYGYTF TRBV29-1*01 TRBJ1-2*01 HLA-A*02:01 B2M MHCI GLCTLVAML BLMF1 EBV PMID:34811538 tetramer-sort yes amplicon-seq effector memory T cells T1D T1D_2 chip0420_601666 PBMC +3580 CAASTGVLGYTF TRBV19*01 TRBJ1-2*01 HLA-A*02:01 B2M MHCI GILGFVFTL M1 InfluenzaA PMID:34811538 tetramer-sort yes amplicon-seq transitional T cells between effector and memory populations T1D T1D_1 chip0420_196073 PBMC +3584 CAVKDTDRLIF TRAV8-1*01 TRAJ34*01 CASSPHLGAAAEQYF TRBV19*01 TRBJ2-7*01 HLA-A*02:01 B2M MHCI YVLDHLIVV BRLF1 EBV PMID:34811538 tetramer-sort yes amplicon-seq effector memory T cells T1D T1D_1 chip0420_719961 PBMC +3587 CASRQLAGNGETQYF TRBV6-1*01 TRBJ2-5*01 HLA-A*02:01 B2M MHCI YVLDHLIVV BRLF1 EBV PMID:34811538 tetramer-sort yes amplicon-seq effector memory T cells T1D T1D_1 chip0420_693341 PBMC +3588 CASSQGLSFPRPREAFF TRBV3-1*01 TRBJ1-1*01 HLA-A*02:01 B2M MHCI GILGFVFTL M1 InfluenzaA PMID:34811538 tetramer-sort yes amplicon-seq transitional T cells between effector and memory populations T1D T1D_1 chip0420_444526 PBMC +3589 CASRPFHPGALFF TRBV19*01 TRBJ2-2*01 HLA-A*02:01 B2M MHCI GILGFVFTL M1 InfluenzaA PMID:34811538 tetramer-sort yes amplicon-seq transitional T cells between effector and memory populations T1D T1D_1 chip0420_373956 PBMC +3591 CAMRESSYGGYQKVTF TRAV14/DV4*01 TRAJ13*01 CSVRTGIAKNIQYF TRBV29-1*01 TRBJ2-4*01 HLA-A*02:01 B2M MHCI RQFGPDWIVA ADH HomoSapiens PMID:34811538 tetramer-sort yes amplicon-seq transitional T cells between effector and memory populations T1D T1D_2 chip0420_829410 PBMC +3592 CSVGTGGTNEKLFF TRBV29-1*01 TRBJ1-4*01 HLA-A*02:01 B2M MHCI GLCTLVAML BLMF1 EBV PMID:34811538 tetramer-sort yes amplicon-seq transitional T cells between effector and memory populations T1D T1D_2 chip0420_489376 PBMC +3593 CASSSGLVAPGELFF TRBV2*01 TRBJ2-2*01 HLA-A*02:01 B2M MHCI GLCTLVAML BLMF1 EBV PMID:34811538 tetramer-sort yes amplicon-seq effector memory T cells T1D T1D_2 chip0420_309107 PBMC +3594 CSVGSRGTNEKLFF TRBV29-1*01 TRBJ1-4*01 HLA-A*02:01 B2M MHCI GLCTLVAML BLMF1 EBV PMID:34811538 tetramer-sort yes amplicon-seq effector memory T cells T1D T1D_1 chip0420_544476 PBMC +3595 CSVGSRGTNEKLFF TRBV29-1*01 TRBJ1-4*01 HLA-A*02:01 B2M MHCI GLCTLVAML BLMF1 EBV PMID:34811538 tetramer-sort yes amplicon-seq effector T cells T1D T1D_1 chip0420_545294 PBMC +3596 CAMTASNFGNEKLTF TRAV12-3*01 TRAJ48*01 HLA-A*02:01 B2M MHCI LLAGIGTVPI PGT HomoSapiens PMID:34811538 tetramer-sort yes amplicon-seq Naive T cells T1D T1D_1 chip0420_386107 PBMC +3597 CATQQGGDSQPQHL TRBV28*01 TRBJ1-5*01 HLA-A*02:01 B2M MHCI GLCTLVAML BLMF1 EBV PMID:34811538 tetramer-sort yes amplicon-seq effector memory T cells T1D T1D_1 chip0420_141218 PBMC +3598 CSVEWGEGYEQYF TRBV29-1*01 TRBJ2-7*01 HLA-A*02:01 B2M MHCI RGPGRAFVTI GP160 HIV-1 PMID:34811538 tetramer-sort yes amplicon-seq Naive T cells T1D T1D_1 chip0420_163324 PBMC +3600 CASSQEQGRSYNEQFF TRBV3-1*01 TRBJ2-1*01 HLA-A*02:01 B2M MHCI LLAGIGTVPI PGT HomoSapiens PMID:34811538 tetramer-sort yes amplicon-seq Naive T cells T1D T1D_1 chip0420_678879 PBMC +3601 CAAYAGNMLTF TRAV29/DV5*01 TRAJ39*01 CASRMGAGDTQYF TRBV10-2*01 TRBJ2-3*01 HLA-A*02:01 B2M MHCI GLCTLVAML BLMF1 EBV PMID:34811538 tetramer-sort yes amplicon-seq effector memory T cells T1D T1D_2 chip0420_368323 PBMC +3602 CSVGSRGTNEKLFF TRBV29-1*01 TRBJ1-4*01 HLA-A*02:01 B2M MHCI GLCTLVAML BLMF1 EBV PMID:34811538 tetramer-sort yes amplicon-seq effector memory T cells T1D T1D_1 chip0420_290337 PBMC +3603 CAGPGSQGNLIF TRAV27*01 TRAJ42*01 CASRAGAGDTQYF TRBV10-2*01 TRBJ2-3*01 HLA-A*02:01 B2M MHCI GLCTLVAML BLMF1 EBV PMID:34811538 tetramer-sort yes amplicon-seq effector memory T cells T1D T1D_2 chip0420_217668 PBMC +3605 CSIQEGGYGYTF TRBV29-1*01 TRBJ1-2*01 HLA-A*02:01 B2M MHCI GLCTLVAML BLMF1 EBV PMID:34811538 tetramer-sort yes amplicon-seq effector memory T cells T1D T1D_1 chip0420_505429 PBMC +3607 CAYLRDNNNDMRF TRAV38-1*01 TRAJ43*01 HLA-A*02:01 B2M MHCI RGPGRAFVTI GP160 HIV-1 PMID:34811538 tetramer-sort yes amplicon-seq Naive T cells healthy healthy_1 chip0420_189864 PBMC +3608 CGTEEPNDYKLSF TRAV30*01 TRAJ20*01 HLA-A*02:01 B2M MHCI GLCTLVAML BLMF1 EBV PMID:34811538 tetramer-sort yes amplicon-seq effector T cells T1D T1D_1 chip0420_155185 PBMC +3609 CGPEEPNDYKLSF TRAV30*01 TRAJ20*01 HLA-A*02:01 B2M MHCI GLCTLVAML BLMF1 EBV PMID:34811538 tetramer-sort yes amplicon-seq effector memory T cells T1D T1D_1 chip0420_805938 PBMC +3610 CSSQEGGYGYTF TRBV29-1*01 TRBJ1-2*01 HLA-A*02:01 B2M MHCI GLCTLVAML BLMF1 EBV PMID:34811538 tetramer-sort yes amplicon-seq effector T cells T1D T1D_2 chip0420_738234 PBMC +3612 CAGALDNYGQNFVF TRAV27*01 TRAJ26*01 HLA-A*02:01 B2M MHCI LLAGIGTVPI PGT HomoSapiens PMID:34811538 tetramer-sort yes amplicon-seq central memory T cells T1D T1D_2 chip0420_397201 PBMC +3613 CAASIGAQFYF TRAV13-1*01 TRAJ49*01 HLA-A*02:01 B2M MHCI ALWMRLLPLL INS HomoSapiens PMID:34811538 tetramer-sort yes amplicon-seq Naive T cells T1D T1D_1 chip0420_433059 PBMC +3614 CASSHLLGTGFGYTF TRBV3-1*01 TRBJ1-2*01 HLA-A*02:01 B2M MHCI YVLDHLIVV BRLF1 EBV PMID:34811538 tetramer-sort yes amplicon-seq effector memory T cells T1D T1D_1 chip0420_399740 PBMC +3615 CASSALLGGAYGYTF TRBV27*01 TRBJ1-2*01 HLA-A*02:01 B2M MHCI YVLDHLIVV BRLF1 EBV PMID:34811538 tetramer-sort yes amplicon-seq effector memory T cells T1D T1D_2 chip0420_170221 PBMC +3616 CSASAGWRGVTYEQYF TRBV20-1*01 TRBJ2-7*01 HLA-B*08:01 B2M MHCI NLIFKWKSI G6PC2 HomoSapiens PMID:34811538 tetramer-sort yes amplicon-seq Naive T cells T1D T1D_3 chip0420_850205 PBMC +3617 CAFMIGAGGTSYGKLTF TRAV38-1*01 TRAJ52*01 HLA-A*02:01 B2M MHCI GILGFVFTL M1 InfluenzaA PMID:34811538 tetramer-sort yes amplicon-seq transitional T cells between effector and memory populations T1D T1D_1 chip0420_695545 PBMC +3619 CASSDGRVHPGTQYF TRBV2*01 TRBJ2-5*01 HLA-A*02:01 B2M MHCI GLCTLVAML BLMF1 EBV PMID:34811538 tetramer-sort yes amplicon-seq effector memory T cells T1D T1D_1 chip0420_520074 PBMC +3620 CSVGTGGTNEKLFF TRBV29-1*01 TRBJ1-4*01 HLA-A*02:01 B2M MHCI GLCTLVAML BLMF1 EBV PMID:34811538 tetramer-sort yes amplicon-seq transitional T cells between effector and memory populations T1D T1D_2 chip0420_260817 PBMC +3621 CSVGGSFYGYTF TRBV29-1*01 TRBJ1-2*01 HLA-A*02:01 B2M MHCI GLCTLVAML BLMF1 EBV PMID:34811538 tetramer-sort yes amplicon-seq effector T cells T1D T1D_2 chip0420_547118 PBMC +3622 CSVGTGGTNEKLFF TRBV29-1*01 TRBJ1-4*01 HLA-A*02:01 B2M MHCI GLCTLVAML BLMF1 EBV PMID:34811538 tetramer-sort yes amplicon-seq effector memory T cells T1D T1D_2 chip0420_519044 PBMC +3623 CAFMKPLa?gGNARLMF TRAV38-1*01 TRAJ31*01 HLA-B*08:01 B2M MHCI RAKFKQLL BZLF1 EBV PMID:34811538 tetramer-sort yes amplicon-seq effector memory T cells T1D T1D_3 chip0420_247965 PBMC +3624 CAWRGEPSYNEQFF TRBV30*01 TRBJ2-1*01 HLA-A*02:01 B2M MHCI YVLDHLIVV BRLF1 EBV PMID:34811538 tetramer-sort yes amplicon-seq effector memory T cells T1D T1D_2 chip0420_625214 PBMC +3625 CGTEEPNDYKLSL TRAV30*01 TRAJ20*01 CASSTGQLSNTGELFF TRBV9*01 TRBJ2-2*01 HLA-A*02:01 B2M MHCI GLCTLVAML BLMF1 EBV PMID:34811538 tetramer-sort yes amplicon-seq effector T cells T1D T1D_1 chip0420_599915 PBMC +3626 CVVNVTYNFNKFYF TRAV12-1*01 TRAJ21*01 HLA-A*02:01 B2M MHCI GLCTLVAML BLMF1 EBV PMID:34811538 tetramer-sort yes amplicon-seq effector memory T cells T1D T1D_1 chip0420_517403 PBMC +3627 CASQVGTAAYEQYF TRBV2*01 TRBJ2-7*01 HLA-A*02:01 B2M MHCI ALAGIGILTV MART1 HomoSapiens PMID:34811538 tetramer-sort yes amplicon-seq Naive T cells T1D T1D_1 chip0420_299892 PBMC +3628 CASRMGAGDTQYF TRBV10-2*01 TRBJ2-3*01 HLA-A*02:01 B2M MHCI GLCTLVAML BLMF1 EBV PMID:34811538 tetramer-sort yes amplicon-seq effector memory T cells T1D T1D_2 chip0420_67545 PBMC +3631 CASSESSRTGIPEAFF TRBV10-2*01 TRBJ1-1*01 HLA-A*02:01 B2M MHCI LLAGIGTVPI PGT HomoSapiens PMID:34811538 tetramer-sort yes amplicon-seq Naive T cells T1D T1D_1 chip0420_484926 PBMC +3633 CSVGGSFYGYTF TRBV29-1*01 TRBJ1-2*01 HLA-A*02:01 B2M MHCI GLCTLVAML BLMF1 EBV PMID:34811538 tetramer-sort yes amplicon-seq effector memory T cells T1D T1D_2 chip0420_751740 PBMC +3635 GASSYLAGGNAHTEELFS TRBV6-2*01,TRBV6-3*01 TRBJ2-2*01 HLA-A*02:01 B2M MHCI RLLPLLALLAL INS HomoSapiens PMID:34811538 tetramer-sort yes amplicon-seq central memory T cells T1D T1D_2 chip0420_432087 PBMC +3636 CASSLGRVPQGGYTF TRBV13*01 TRBJ1-2*01 HLA-A*02:01 B2M MHCI LLAGIGTVPI PGT HomoSapiens PMID:34811538 tetramer-sort yes amplicon-seq Naive T cells T1D T1D_2 chip0420_585919 PBMC +3638 CAMSWAISNFGNAHLTF TRAV12-3*01 TRAJ48*01 HLA-A*02:01 B2M MHCI LLAGIGTVPI PGT HomoSapiens PMID:34811538 tetramer-sort yes amplicon-seq Naive T cells healthy healthy_1 chip0420_676522 PBMC +3640 CASRMGAGDTQYF TRBV10-2*01 TRBJ2-3*01 HLA-A*02:01 B2M MHCI GLCTLVAML BLMF1 EBV PMID:34811538 tetramer-sort yes amplicon-seq effector memory T cells T1D T1D_2 chip0420_416501 PBMC +3641 CASSSGLVAPGELFF TRBV2*01 TRBJ2-2*01 HLA-A*02:01 B2M MHCI GLCTLVAML BLMF1 EBV PMID:34811538 tetramer-sort yes amplicon-seq effector memory T cells T1D T1D_2 chip0420_350544 PBMC +3642 YASSQSPGGTQYF TRBV14*01 TRBJ2-3*01 HLA-A*02:01 B2M MHCI GLCTLVAML BLMF1 EBV PMID:34811538 tetramer-sort yes amplicon-seq effector memory T cells T1D T1D_1 chip0420_307769 PBMC +3644 CASSLPDRGTYEQYF TRBV7-9*01 TRBJ2-7*01 HLA-A*02:01 B2M MHCI VLFGLGFAI IGRP HomoSapiens PMID:34811538 tetramer-sort yes amplicon-seq Naive T cells T1D T1D_1 chip0420_435796 PBMC +3645 CASSLTFGGGGTDTQYF TRBV28*01 TRBJ2-3*01 HLA-A*02:01 B2M MHCI LLAGIGTVPI PGT HomoSapiens PMID:34811538 tetramer-sort yes amplicon-seq Naive T cells T1D T1D_1 chip0420_122354 PBMC +3646 CASSIGTGTSDHNEQFF TRBV19*01 TRBJ2-1*01 HLA-A*02:01 B2M MHCI LLAGIGTVPI PGT HomoSapiens PMID:34811538 tetramer-sort yes amplicon-seq Naive T cells T1D T1D_1 chip0420_876528 PBMC +3647 CAVSDRAGGFETLF TRAV8-4*01 TRAJ9*01 HLA-A*02:01 B2M MHCI GILGFVFTL M1 InfluenzaA PMID:34811538 tetramer-sort yes amplicon-seq transitional T cells between effector and memory populations T1D T1D_1 chip0420_741805 PBMC +3648 CASRAGAGDTQYF TRBV10-2*01 TRBJ2-3*01 HLA-A*02:01 B2M MHCI GLCTLVAML BLMF1 EBV PMID:34811538 tetramer-sort yes amplicon-seq effector memory T cells T1D T1D_2 chip0420_563029 PBMC +3649 CAVKDTDKLIF TRAV8-1*01 TRAJ34*01 CAWSVQLAGVDEQYF TRBV30*01 TRBJ2-7*01 HLA-A*02:01 B2M MHCI YVLDHLIVV BRLF1 EBV PMID:34811538 tetramer-sort yes amplicon-seq effector memory T cells T1D T1D_2 chip0420_176570 PBMC +3650 CAGAAGR??cGPDGLPF TRAV27*01 TRAJ45*01 HLA-A*02:01 B2M MHCI GILGFVFTL M1 InfluenzaA PMID:34811538 tetramer-sort yes amplicon-seq transitional T cells between effector and memory populations healthy healthy_1 chip0420_838429 PBMC +3653 CAVTDTDKLIL TRAV8-1*01 TRAJ34*01 CSAADQTYNEQFF TRBV20-1*01 TRBJ2-1*01 HLA-A*02:01 B2M MHCI YVLDHLIVV BRLF1 EBV PMID:34811538 tetramer-sort yes amplicon-seq effector memory T cells T1D T1D_1 chip0420_197626 PBMC +3655 CASSSGQVLPNEQFF TRBV2*01 TRBJ2-1*01 HLA-A*02:01 B2M MHCI GLCTLVAML BLMF1 EBV PMID:34811538 tetramer-sort yes amplicon-seq effector memory T cells T1D T1D_1 chip0420_6680 PBMC +3656 CAESTSGGKLIF TRAV5*01 TRAJ23*01 CSVGTGGTNEKLFF TRBV29-1*01 TRBJ1-4*01 HLA-A*02:01 B2M MHCI GLCTLVAML BLMF1 EBV PMID:34811538 tetramer-sort yes amplicon-seq effector memory T cells T1D T1D_2 chip0420_524747 PBMC +3657 CAVPLGGFc?tGGYNKLIF TRAV20*01 TRAJ4*01 HLA-A*02:01 B2M MHCI GILGFVFTL M1 InfluenzaA PMID:34811538 tetramer-sort yes amplicon-seq transitional T cells between effector and memory populations T1D T1D_1 chip0420_237558 PBMC +3658 CAESTSRGKLIF TRAV5*01 TRAJ23*01 CSVGTGGTNEKLFF TRBV29-1*01 TRBJ1-4*01 HLA-A*02:01 B2M MHCI GLCTLVAML BLMF1 EBV PMID:34811538 tetramer-sort yes amplicon-seq effector memory T cells T1D T1D_2 chip0420_214753 PBMC +3660 CASRALLGSNQPQHF TRBV19*01 TRBJ1-5*01 HLA-A*02:01 B2M MHCI YVLDHLIVV BRLF1 EBV PMID:34811538 tetramer-sort yes amplicon-seq effector memory T cells T1D T1D_1 chip0420_672558 PBMC +3661 CASSRRTLNSGANVLTF TRBV13*01 TRBJ2-6*01 HLA-A*02:01 B2M MHCI YVLDHLIVV BRLF1 EBV PMID:34811538 tetramer-sort yes amplicon-seq effector memory T cells T1D T1D_2 chip0420_400279 PBMC +3662 CSASARTGNGYTF TRBV20-1*01 TRBJ1-2*01 HLA-A*02:01 B2M MHCI GLCTLVAML BLMF1 EBV PMID:34811538 tetramer-sort yes amplicon-seq effector memory T cells healthy healthy_1 chip0420_79315 PBMC +3663 CAASRgt?NNDMRF TRAV13-1*01 TRAJ43*01 CASSAGSYGYTF TRBV19*01 TRBJ1-2*01 HLA-A*02:01 B2M MHCI GILGFVFTL M1 InfluenzaA PMID:34811538 tetramer-sort yes amplicon-seq transitional T cells between effector and memory populations T1D T1D_2 chip0420_881427 PBMC +3667 CSVGTGGTNEKLFF TRBV29-1*01 TRBJ1-4*01 HLA-A*02:01 B2M MHCI GLCTLVAML BLMF1 EBV PMID:34811538 tetramer-sort yes amplicon-seq effector T cells T1D T1D_2 chip0420_839694 PBMC +3672 CASSPARGLPEAFF TRAV36/DV7*01 TRAJ40*01 CASSPDRGLPEAFF TRBV7-9*01 TRBJ1-1*01 HLA-A*02:01 B2M MHCI LLAGIGTVPI PGT HomoSapiens PMID:34811538 tetramer-sort yes amplicon-seq Naive T cells T1D T1D_1 chip0420_277062 PBMC +3674 CAVKDTDKLIF TRAV8-1*01 TRAJ34*01 LCQPPRRG??gGAADTQYF TRBV4-2*01 TRBJ2-3*01 HLA-A*02:01 B2M MHCI YVLDHLIVV BRLF1 EBV PMID:34811538 tetramer-sort yes amplicon-seq effector memory T cells T1D T1D_2 chip0420_28601 PBMC +3675 CVVNGRDSRYKLIF TRAV12-1*01 TRAJ12*01 HLA-A*02:01 B2M MHCI GLCTLVAML BLMF1 EBV PMID:34811538 tetramer-sort yes amplicon-seq effector memory T cells T1D T1D_2 chip0420_746865 PBMC +3676 CAYRSPPSSEKLVF TRAV38-2/DV8*01 TRAJ57*01 CSVGTGGTNEKLFF TRBV29-1*01 TRBJ1-4*01 HLA-A*02:01 B2M MHCI YVLDHLIVV BRLF1 EBV PMID:34811538 tetramer-sort yes amplicon-seq effector T cells healthy healthy_1 chip0420_186427 PBMC +3677 CASSERLGGDGYTF TRBV6-4*01 TRBJ1-2*01 HLA-A*02:01 B2M MHCI LLAGIGTVPI PGT HomoSapiens PMID:34811538 tetramer-sort yes amplicon-seq effector memory T cells T1D T1D_1 chip0420_309786 PBMC +3679 CASSETSGYNEQFF TRBV2*01 TRBJ2-1*01 HLA-A*02:01 B2M MHCI LLAGIGTVPI PGT HomoSapiens PMID:34811538 tetramer-sort yes amplicon-seq Naive T cells T1D T1D_2 chip0420_881472 PBMC +3681 CATQQGRASQPQHF TRBV28*01 TRBJ1-5*01 HLA-A*02:01 B2M MHCI GLCTLVAML BLMF1 EBV PMID:34811538 tetramer-sort yes amplicon-seq effector T cells T1D T1D_1 chip0420_345531 PBMC +3682 CASSQSRGSLWDTQYF TRBV4-3*01 TRBJ2-3*01 HLA-A*02:01 B2M MHCI YVLDHLIVV BRLF1 EBV PMID:34811538 tetramer-sort yes amplicon-seq effector memory T cells T1D T1D_2 chip0420_557579 PBMC +3689 CASSDYNEQFF TRBV6-1*01 TRBJ2-1*01 HLA-A*02:01 B2M MHCI YVLDHLIVV BRLF1 EBV PMID:34811538 tetramer-sort yes amplicon-seq transitional T cells between effector and memory populations T1D T1D_2 chip0420_709056 PBMC +3691 CVVNPPHDYKLSF TRAV12-1*01 TRAJ20*01 CASSVGVLSAGELFF TRBV9*01 TRBJ2-2*01 HLA-A*02:01 B2M MHCI GLCTLVAML BLMF1 EBV PMID:34811538 tetramer-sort yes amplicon-seq effector T cells T1D T1D_2 chip0420_677 PBMC +3692 CAVNALDKLIF TRAV8-1*01 TRAJ34*01 CASSEAFLADNEQFF TRBV6-4*01 TRBJ2-1*01 HLA-A*02:01 B2M MHCI YVLDHLIVV BRLF1 EBV PMID:34811538 tetramer-sort yes amplicon-seq effector memory T cells T1D T1D_1 chip0420_313455 PBMC +3693 CASSILSQQPQHF TRBV19*01 TRBJ1-5*01 HLA-A*02:01 B2M MHCI GILGFVFTL M1 InfluenzaA PMID:34811538 tetramer-sort yes amplicon-seq transitional T cells between effector and memory populations healthy healthy_1 chip0420_355452 PBMC +3694 CAWSVQLAGVDEQYF TRBV30*01 TRBJ2-7*01 HLA-A*02:01 B2M MHCI YVLDHLIVV BRLF1 EBV PMID:34811538 tetramer-sort yes amplicon-seq transitional T cells between effector and memory populations T1D T1D_2 chip0420_112399 PBMC +3695 CGTEEPNDYKLSF TRAV30*01 TRAJ20*01 CASSTGQLSNTGELFF TRBV9*01 TRBJ2-2*01 HLA-A*02:01 B2M MHCI GLCTLVAML BLMF1 EBV PMID:34811538 tetramer-sort yes amplicon-seq effector memory T cells T1D T1D_1 chip0420_833613 PBMC +3700 CASSQSPGGTQYF TRBV14*01 TRBJ2-3*01 HLA-A*02:01 B2M MHCI GLCTLVAML BLMF1 EBV PMID:34811538 tetramer-sort yes amplicon-seq effector memory T cells T1D T1D_1 chip0420_126307 PBMC +3701 CSVGSRGTNEKLFF TRBV29-1*01 TRBJ1-4*01 HLA-A*02:01 B2M MHCI GLCTLVAML BLMF1 EBV PMID:34811538 tetramer-sort yes amplicon-seq effector T cells T1D T1D_1 chip0420_13453 PBMC +3702 CASRGLTGGASEQYF TRBV6-1*01 TRBJ2-7*01 HLA-A*02:01 B2M MHCI YVLDHLIVV BRLF1 EBV PMID:34811538 tetramer-sort yes amplicon-seq effector memory T cells T1D T1D_2 chip0420_639650 PBMC +3703 CASSRQGGEDGCTF TRBV6-1*01 TRBJ1-2*01 HLA-A*02:01 B2M MHCI YVLDHLIVV BRLF1 EBV PMID:34811538 tetramer-sort yes amplicon-seq effector T cells T1D T1D_2 chip0420_615193 PBMC +3705 CAISEGTLSSYNEQFF TRBV10-3*01 TRBJ2-1*01 HLA-A*02:01 B2M MHCI YVLDHLIVV BRLF1 EBV PMID:34811538 tetramer-sort yes amplicon-seq effector memory T cells T1D T1D_1 chip0420_699772 PBMC +3707 CAGAAGT??cGADGLTF TRAV27*01 TRAJ45*01 HLA-A*02:01 B2M MHCI GILGFVFTL M1 InfluenzaA PMID:34811538 tetramer-sort yes amplicon-seq transitional T cells between effector and memory populations healthy healthy_1 chip0420_857054 PBMC +3710 CASSQSPGGTQYF TRBV14*01 TRBJ2-3*01 HLA-A*02:01 B2M MHCI GLCTLVAML BLMF1 EBV PMID:34811538 tetramer-sort yes amplicon-seq effector memory T cells T1D T1D_1 chip0420_526054 PBMC +3711 CASSFPEGQGFYGYTF TRBV7-9*01 TRBJ1-2*01 HLA-A*02:01 B2M MHCI SLVALGINAV POL HCV PMID:34811538 tetramer-sort yes amplicon-seq natural killer-like T cells T1D T1D_1 chip0420_235294 PBMC +3713 CASSPTDLNTEAFF TRBV4-1*01 TRBJ1-1*01 HLA-A*02:01 B2M MHCI YVLDHLIVV BRLF1 EBV PMID:34811538 tetramer-sort yes amplicon-seq effector memory T cells T1D T1D_1 chip0420_486596 PBMC +3714 CAVSVNNNDMRF TRAV12-2*01 TRAJ43*01 HLA-A*02:01 B2M MHCI VMNILLQYV GAD65 HomoSapiens PMID:34811538 tetramer-sort yes amplicon-seq effector memory T cells T1D T1D_1 chip0420_303294 PBMC +3715 CVVNGRDSSYKLIF TRAV12-1*01 TRAJ12*01 HLA-A*02:01 B2M MHCI GLCTLVAML BLMF1 EBV PMID:34811538 tetramer-sort yes amplicon-seq effector T cells T1D T1D_1 chip0420_697405 PBMC +3716 CASLTPGASTIIF TRAV8-6*01 TRAJ3*01 CASSSGLVAPGELFF TRBV2*01 TRBJ2-2*01 HLA-A*02:01 B2M MHCI GLCTLVAML BLMF1 EBV PMID:34811538 tetramer-sort yes amplicon-seq effector memory T cells T1D T1D_2 chip0420_631858 PBMC +3718 CASRMGAGDTQYF TRBV10-2*01 TRBJ2-3*01 HLA-A*02:01 B2M MHCI GLCTLVAML BLMF1 EBV PMID:34811538 tetramer-sort yes amplicon-seq effector memory T cells T1D T1D_2 chip0420_745693 PBMC +3719 CASSSGQVLPNEQFF TRBV2*01 TRBJ2-1*01 HLA-A*02:01 B2M MHCI GLCTLVAML BLMF1 EBV PMID:34811538 tetramer-sort yes amplicon-seq effector memory T cells T1D T1D_1 chip0420_210118 PBMC +3720 CASSQSPGDTQYF TRBV14*01 TRBJ2-3*01 HLA-A*02:01 B2M MHCI GLCTLVAML BLMF1 EBV PMID:34811538 tetramer-sort yes amplicon-seq effector memory T cells T1D T1D_1 chip0420_787389 PBMC +3723 CSVGSRGTNEKLFF TRBV29-1*01 TRBJ1-4*01 HLA-A*02:01 B2M MHCI GLCTLVAML BLMF1 EBV PMID:34811538 tetramer-sort yes amplicon-seq effector memory T cells T1D T1D_1 chip0420_475913 PBMC +3724 CAGNYGGSQGNLIF TRAV25*01 TRAJ42*01 CASSTRSTGELFF TRBV19*01 TRBJ2-2*01 HLA-A*02:01 B2M MHCI GILGFVFTL M1 InfluenzaA PMID:34811538 tetramer-sort yes amplicon-seq transitional T cells between effector and memory populations T1D T1D_2 chip0420_600447 PBMC +3726 CASSIRAGGAYEQYF TRBV28*01 TRBJ2-7*01 HLA-A*02:01 B2M MHCI YLLEMLWRL LMP1 EBV PMID:34811538 tetramer-sort yes amplicon-seq central memory T cells T1D T1D_1 chip0420_376134 PBMC +3727 CASSSGAYGYTF TRBV19*01 TRBJ1-2*01 HLA-A*02:01 B2M MHCI GILGFVFTL M1 InfluenzaA PMID:34811538 tetramer-sort yes amplicon-seq transitional T cells between effector and memory populations T1D T1D_1 chip0420_682649 PBMC +3728 CALSESSGGSYIPTF TRAV19*01 TRAJ6*01 CANSGWGGQGTTNTGELFS TRBV13*01 TRBJ2-2*01 HLA-A*02:01 B2M MHCI FLWSVFWLI IGRP HomoSapiens PMID:34811538 tetramer-sort yes amplicon-seq Naive T cells T1D T1D_1 chip0420_616247 PBMC +3729 CASSQSPGGTQYF TRBV14*01 TRBJ2-3*01 HLA-A*02:01 B2M MHCI GLCTLVAML BLMF1 EBV PMID:34811538 tetramer-sort yes amplicon-seq effector memory T cells T1D T1D_1 chip0420_592766 PBMC +3730 CARSTGSYGYTF TRBV19*01 TRBJ1-2*01 HLA-A*02:01 B2M MHCI GILGFVFTL M1 InfluenzaA PMID:34811538 tetramer-sort yes amplicon-seq transitional T cells between effector and memory populations healthy healthy_1 chip0420_257114 PBMC +3731 CAESTSGGPLVL TRAV5*01 TRAJ23*01 CSVGTGGTNEKLFF TRBV29-1*01 TRBJ1-4*01 HLA-A*02:01 B2M MHCI GLCTLVAML BLMF1 EBV PMID:34811538 tetramer-sort yes amplicon-seq effector memory T cells T1D T1D_2 chip0420_687212 PBMC +3732 CASSFGQGGYQPQHF TRBV3-1*01 TRBJ1-5*01 HLA-A*02:01 B2M MHCI GILGFVFTL M1 InfluenzaA PMID:34811538 tetramer-sort yes amplicon-seq Naive T cells T1D T1D_1 chip0420_471087 PBMC +3734 CALGGLTF TRAV8-1*01 TRAJ22*01 CASSPSTSGSGETQYF TRBV3-1*01 TRBJ2-5*01 HLA-A*02:01 B2M MHCI YVLDHLIVV BRLF1 EBV PMID:34811538 tetramer-sort yes amplicon-seq effector memory T cells T1D T1D_2 chip0420_688727 PBMC +3735 CASSRGTSGPAGYEQYF TRBV11-2*01 TRBJ2-7*01 HLA-A*02:01 B2M MHCI LLAGIGTVPI PGT HomoSapiens PMID:34811538 tetramer-sort yes amplicon-seq effector memory T cells healthy healthy_1 chip0420_218304 PBMC +3739 CASTINERAFF TRBV6-2*01,TRBV6-3*01 TRBJ1-1*01 HLA-A*02:01 B2M MHCI LLAGIGTVPI PGT HomoSapiens PMID:34811538 tetramer-sort yes amplicon-seq Naive T cells T1D T1D_1 chip0420_159677 PBMC +3743 CASSHGGSGPLRTQYF TRBV14*01 TRBJ2-5*01 HLA-A*02:01 B2M MHCI LLAGIGTVPI PGT HomoSapiens PMID:34811538 tetramer-sort yes amplicon-seq Naive T cells healthy healthy_1 chip0420_66480 PBMC +3745 CAMTLSNt?tWTAHLPF TRAV12-3*01 TRAJ48*01 CASSSGGTGGGDHYEQYF TRBV27*01 TRBJ2-7*01 HLA-A*02:01 B2M MHCI LLAGIGTVPI PGT HomoSapiens PMID:34811538 tetramer-sort yes amplicon-seq Naive T cells healthy healthy_1 chip0420_162368 PBMC +3746 CAVRDHQgc??caGSTPLVF TRAV8-4*01 TRAJ29*01 CASQTGGIPGANVLTF TRBV19*01 TRBJ2-6*01 HLA-A*02:01 B2M MHCI LLAGIGTVPI PGT HomoSapiens PMID:34811538 tetramer-sort yes amplicon-seq Naive T cells T1D T1D_1 chip0420_747319 PBMC +3749 CASSPVSGSTYEQYF TRBV3-1*01 TRBJ2-7*01 HLA-A*02:01 B2M MHCI GLCTLVAML BLMF1 EBV PMID:34811538 tetramer-sort yes amplicon-seq effector memory T cells T1D T1D_1 chip0420_253455 PBMC +3752 CASSLVRAGDTEAFF TRBV7-9*01 TRBJ1-1*01 HLA-B*08:01 B2M MHCI RAKFKQLL BZLF1 EBV PMID:34811538 tetramer-sort yes amplicon-seq transitional T cells between effector and memory populations T1D T1D_3 chip0420_839764 PBMC +3754 CARCFLGPGLNAQYF TRBV28*01 TRBJ2-7*01 HLA-A*02:01 B2M MHCI GLCTLVAML BLMF1 EBV PMID:34811538 tetramer-sort yes amplicon-seq effector memory T cells T1D T1D_1 chip0420_371370 PBMC +3756 CVVLQYHQGPKLIS TRAV12-1*01 TRAJ23*01 CASSHALENTGELFF TRBV3-1*01 TRBJ2-2*01 HLA-A*02:01 B2M MHCI YVLDHLIVV BRLF1 EBV PMID:34811538 tetramer-sort yes amplicon-seq effector T cells T1D T1D_2 chip0420_130543 PBMC +3757 CAVLMDSNYQLIW TRAV12-3*01,TRAV21*01 TRAJ33*01 CASSEDGMNTEAFF TRBV10-2*01 TRBJ1-1*01 HLA-A*02:01 B2M MHCI CLGGLLTMV LMP2A EBV PMID:34811538 tetramer-sort yes amplicon-seq effector memory T cells T1D T1D_2 chip0420_72497 PBMC +3760 CASRALLGGKETQYF TRBV6-1*01 TRBJ2-5*01 HLA-A*02:01 B2M MHCI YVLDHLIVV BRLF1 EBV PMID:34811538 tetramer-sort yes amplicon-seq effector memory T cells T1D T1D_1 chip0420_288116 PBMC +3761 CAAYAGNMLPF TRAV29/DV5*01 TRAJ39*01 HLA-A*02:01 B2M MHCI GLCTLVAML BLMF1 EBV PMID:34811538 tetramer-sort yes amplicon-seq effector T cells T1D T1D_2 chip0420_218494 PBMC +3763 CSVDQRTGQKKNYGYTF TRBV29-1*01 TRBJ1-2*01 HLA-A*02:01 B2M MHCI GLCTLVAML BLMF1 EBV PMID:34811538 tetramer-sort yes amplicon-seq effector T cells T1D T1D_2 chip0420_42783 PBMC +3764 RASSQDLLAVGELFF TRBV3-1*01 TRBJ2-2*01 HLA-A*02:01 B2M MHCI YVLDHLIVV BRLF1 EBV PMID:34811538 tetramer-sort yes amplicon-seq effector memory T cells T1D T1D_2 chip0420_782889 PBMC +3765 CAVDLP??cQGSLIF TRAV39*01 TRAJ42*01 HLA-A*02:01 B2M MHCI LLAGIGTVPI PGT HomoSapiens PMID:34811538 tetramer-sort yes amplicon-seq Naive T cells T1D T1D_1 chip0420_530954 PBMC +3766 CSVGGSFYGYTF TRBV29-1*01 TRBJ1-2*01 HLA-A*02:01 B2M MHCI GLCTLVAML BLMF1 EBV PMID:34811538 tetramer-sort yes amplicon-seq effector memory T cells T1D T1D_2 chip0420_8104 PBMC +3767 CASRMGAGDTQYF TRBV10-2*01 TRBJ2-3*01 HLA-A*02:01 B2M MHCI GLCTLVAML BLMF1 EBV PMID:34811538 tetramer-sort yes amplicon-seq effector memory T cells T1D T1D_2 chip0420_769196 PBMC +3769 CASSPDQTSSYNEQFF TRBV27*01 TRBJ2-1*01 HLA-A*02:01 B2M MHCI YVLDHLIVV BRLF1 EBV PMID:34811538 tetramer-sort yes amplicon-seq effector memory T cells T1D T1D_1 chip0420_315513 PBMC +3771 CASSSGLVAPGELFF TRBV2*01 TRBJ2-2*01 HLA-A*02:01 B2M MHCI GLCTLVAML BLMF1 EBV PMID:34811538 tetramer-sort yes amplicon-seq effector memory T cells T1D T1D_2 chip0420_276186 PBMC +3772 CASSSGQVLPNEQFF TRBV2*01 TRBJ2-1*01 HLA-A*02:01 B2M MHCI GLCTLVAML BLMF1 EBV PMID:34811538 tetramer-sort yes amplicon-seq effector memory T cells T1D T1D_1 chip0420_143926 PBMC +3773 CAVKDTDKLIF TRAV8-1*01 TRAJ34*01 HLA-A*02:01 B2M MHCI YVLDHLIVV BRLF1 EBV PMID:34811538 tetramer-sort yes amplicon-seq effector memory T cells T1D T1D_2 chip0420_822537 PBMC +3774 CASSSRSSYEQYF TRBV19*01 TRBJ2-7*01 HLA-A*02:01 B2M MHCI GILGFVFTL M1 InfluenzaA PMID:34811538 tetramer-sort yes amplicon-seq effector T cells T1D T1D_1 chip0420_572630 PBMC +3775 CAVSDTG??cRPYKYIF TRAV8-6*01 TRAJ40*01 CASSPDQTSSYNEQFF TRBV27*01 TRBJ2-1*01 HLA-A*02:01 B2M MHCI YVLDHLIVV BRLF1 EBV PMID:34811538 tetramer-sort yes amplicon-seq effector memory T cells T1D T1D_1 chip0420_117573 PBMC +3776 CSVSPGg?cSYEQYF TRBV29-1*01 TRBJ2-7*01 HLA-A*02:01 B2M MHCI LLAGIGTVPI PGT HomoSapiens PMID:34811538 tetramer-sort yes amplicon-seq Naive T cells T1D T1D_1 chip0420_18576 PBMC +3777 CILLSNFNKFYF TRAV26-2*01 TRAJ21*01 CASISLDPLYF TRBV2*01 TRBJ2-5*01 HLA-A*02:01 B2M MHCI LLAGIGTVPI PGT HomoSapiens PMID:34811538 tetramer-sort yes amplicon-seq Naive T cells healthy healthy_1 chip0420_710581 PBMC +3779 CAVLMDSNYQLIW TRAV21*01 TRAJ33*01 CASSSDGMNTEAFF TRBV10-2*01 TRBJ1-1*01 HLA-A*02:01 B2M MHCI CLGGLLTMV LMP2A EBV PMID:34811538 tetramer-sort yes amplicon-seq effector memory T cells T1D T1D_2 chip0420_681436 PBMC +3781 CASSSETGTETQYF TRBV7-9*01 TRBJ2-5*01 HLA-A*02:01 B2M MHCI RGPGRAFVTI GP160 HIV-1 PMID:34811538 tetramer-sort yes amplicon-seq Naive T cells T1D T1D_1 chip0420_796099 PBMC +3784 CATEGDSGYSTLTF TRAV17*01 TRAJ11*01 WARSVQGGNYGYTF TRBV6-1*01 TRBJ1-2*01 HLA-A*02:01 B2M MHCI FLYALALLL LMP2 EBV PMID:34811538 tetramer-sort yes amplicon-seq central memory T cells T1D T1D_1 chip0420_1049 PBMC +3785 CASSQGPSGANEQFF TRBV4-3*01 TRBJ2-1*01 HLA-A*02:01 B2M MHCI LLAGIGTVPI PGT HomoSapiens PMID:34811538 tetramer-sort yes amplicon-seq central memory T cells healthy healthy_2 chip0420_441827 PBMC +3787 CASSINGGRRDGYTF TRBV19*01 TRBJ1-2*01 HLA-A*02:01 B2M MHCI GILGFVFTL M1 InfluenzaA PMID:34811538 tetramer-sort yes amplicon-seq transitional T cells between effector and memory populations T1D T1D_1 chip0420_281497 PBMC +3790 CAEGGNGQNFVF TRAV12-2*01 TRAJ26*01 CASSFSGEQFF TRBV5-4*01 TRBJ2-1*01 HLA-A*02:01 B2M MHCI ALAGIGILTV MART1 HomoSapiens PMID:34811538 tetramer-sort yes amplicon-seq Naive T cells T1D T1D_2 chip0420_40817 PBMC +3791 CAVKDTDKLIF TRAV8-1*01 TRAJ34*01 CAWSVQLAGVDEQYF TRBV30*01 TRBJ2-7*01 HLA-A*02:01 B2M MHCI YVLDHLIVV BRLF1 EBV PMID:34811538 tetramer-sort yes amplicon-seq effector memory T cells T1D T1D_2 chip0420_13777 PBMC +3793 CGPEEPNDYKLSF TRAV30*01 TRAJ20*01 HLA-A*02:01 B2M MHCI GLCTLVAML BLMF1 EBV PMID:34811538 tetramer-sort yes amplicon-seq effector memory T cells T1D T1D_1 chip0420_47598 PBMC +3794 CAAPRWEQLTF TRAV13-1*01 TRAJ48*01 HLA-A*02:01 B2M MHCI YVLDHLIVV BRLF1 EBV PMID:34811538 tetramer-sort yes amplicon-seq effector memory T cells T1D T1D_1 chip0420_231029 PBMC +3795 CAGGGSQGNLIF TRAV27*01 TRAJ42*01 HLA-A*02:01 B2M MHCI GILGFVFTL M1 InfluenzaA PMID:34811538 tetramer-sort yes amplicon-seq transitional T cells between effector and memory populations T1D T1D_1 chip0420_701803 PBMC +3796 CAMEISNFGNEKLTF TRAV12-3*01 TRAJ48*01 CASRDFGNYGYTF TRBV6-1*01 TRBJ1-2*01 HLA-A*02:01 B2M MHCI LLAGIGTVPI PGT HomoSapiens PMID:34811538 tetramer-sort yes amplicon-seq Naive T cells T1D T1D_1 chip0420_880244 PBMC +3798 CSVGTGGTNEKLFF TRBV29-1*01 TRBJ1-4*01 HLA-A*02:01 B2M MHCI GLCTLVAML BLMF1 EBV PMID:34811538 tetramer-sort yes amplicon-seq effector T cells T1D T1D_2 chip0420_422530 PBMC +3801 CAGSYGGSQGNLIF TRAV25*01 TRAJ42*01 HLA-A*02:01 B2M MHCI GILGFVFTL M1 InfluenzaA PMID:34811538 tetramer-sort yes amplicon-seq transitional T cells between effector and memory populations healthy healthy_1 chip0420_737048 PBMC +3802 CASIPGRNYGYTF TRBV28*01 TRBJ1-2*01 HLA-A*02:01 B2M MHCI LLAGIGTVPI PGT HomoSapiens PMID:34811538 tetramer-sort yes amplicon-seq Naive T cells T1D T1D_1 chip0420_448466 PBMC +3804 CASSPDQTSSYNEQFF TRBV27*01 TRBJ2-1*01 HLA-A*02:01 B2M MHCI YVLDHLIVV BRLF1 EBV PMID:34811538 tetramer-sort yes amplicon-seq effector memory T cells T1D T1D_1 chip0420_698778 PBMC +3806 CAPVARWGKLQF TRAV17*01 TRAJ24*01 CASSLFGTSDYEQYF TRBV13*01 TRBJ2-7*01 HLA-A*02:01 B2M MHCI VMNILLQYV GAD65 HomoSapiens PMID:34811538 tetramer-sort yes amplicon-seq effector T cells T1D T1D_2 chip0420_860724 PBMC +3811 CASSHLLGTGFGYTF TRBV3-1*01 TRBJ1-2*01 HLA-A*02:01 B2M MHCI YVLDHLIVV BRLF1 EBV PMID:34811538 tetramer-sort yes amplicon-seq effector T cells T1D T1D_1 chip0420_212427 PBMC +3813 CANSAVTGGREKLFF TRAV24*01 TRAJ5*01 CASSAVTGGREKLFF TRBV25-1*01 TRBJ1-4*01 HLA-A*02:01 B2M MHCI RGPGRAFVTI GP160 HIV-1 PMID:34811538 tetramer-sort yes amplicon-seq central memory T cells T1D T1D_1 chip0420_18218 PBMC +3814 CASSTGQLSNTGELFF TRBV9*01 TRBJ2-2*01 HLA-A*02:01 B2M MHCI GLCTLVAML BLMF1 EBV PMID:34811538 tetramer-sort yes amplicon-seq effector T cells T1D T1D_1 chip0420_754473 PBMC +3816 CVVNSDNAGNMLTF TRAV12-1*01 TRAJ39*01 CASRYRGLQPYGYTF TRBV6-5*01 TRBJ1-2*01 HLA-A*02:01 B2M MHCI LLAGIGTVPI PGT HomoSapiens PMID:34811538 tetramer-sort yes amplicon-seq Naive T cells T1D T1D_1 chip0420_433432 PBMC +3817 CSVGSRGTNEKLFF TRBV29-1*01 TRBJ1-4*01 HLA-A*02:01 B2M MHCI GLCTLVAML BLMF1 EBV PMID:34811538 tetramer-sort yes amplicon-seq effector memory T cells T1D T1D_1 chip0420_131358 PBMC +3818 CASSGLAGINEQFF TRBV19*01 TRBJ2-1*01 HLA-A*02:01 B2M MHCI GILGFVFTL M1 InfluenzaA PMID:34811538 tetramer-sort yes amplicon-seq transitional T cells between effector and memory populations healthy healthy_1 chip0420_610925 PBMC +3819 CASSDGTGTPNTGELFF TRBV2*01 TRBJ2-2*01 HLA-A*02:01 B2M MHCI KLQVFLIVL IAPP HomoSapiens PMID:34811538 tetramer-sort yes amplicon-seq Naive T cells T1D T1D_1 chip0420_604174 PBMC +3822 CASSPVSGSTYEQYF TRBV3-1*01 TRBJ2-7*01 HLA-A*02:01 B2M MHCI GLCTLVAML BLMF1 EBV PMID:34811538 tetramer-sort yes amplicon-seq effector memory T cells T1D T1D_1 chip0420_432042 PBMC +3826 CAAYAGNMLTF TRAV29/DV5*01 TRAJ39*01 CANRAGg?cRDTQYF TRBV10-2*01 TRBJ2-3*01 HLA-A*02:01 B2M MHCI GLCTLVAML BLMF1 EBV PMID:34811538 tetramer-sort yes amplicon-seq effector memory T cells T1D T1D_2 chip0420_366669 PBMC +3827 CASRAGAGDTQYF TRAV9-1*01 TRAJ40*01 CASRAGAGDTQYF TRBV10-2*01 TRBJ2-3*01 HLA-A*02:01 B2M MHCI GLCTLVAML BLMF1 EBV PMID:34811538 tetramer-sort yes amplicon-seq effector memory T cells T1D T1D_2 chip0420_628706 PBMC +3828 CSAEPRNEGNTIYF TRBV29-1*01 TRBJ1-3*01 HLA-A*02:01 B2M MHCI LLSLFSLWL ZNT8 HomoSapiens PMID:34811538 tetramer-sort yes amplicon-seq Naive T cells healthy healthy_1 chip0420_455288 PBMC +3835 CASSSGLVAPGELFF TRBV2*01 TRBJ2-2*01 HLA-A*02:01 B2M MHCI GLCTLVAML BLMF1 EBV PMID:34811538 tetramer-sort yes amplicon-seq effector memory T cells T1D T1D_2 chip0420_121927 PBMC +3838 CASSTGQLSNTGELFF TRBV9*01 TRBJ2-2*01 HLA-A*02:01 B2M MHCI GLCTLVAML BLMF1 EBV PMID:34811538 tetramer-sort yes amplicon-seq effector T cells T1D T1D_1 chip0420_424498 PBMC +3839 CASSSGLVAPGELFF TRBV2*01 TRBJ2-2*01 HLA-A*02:01 B2M MHCI GLCTLVAML BLMF1 EBV PMID:34811538 tetramer-sort yes amplicon-seq effector memory T cells T1D T1D_2 chip0420_390165 PBMC +3840 RSVGSRGTNEKLFF TRBV29-1*01 TRBJ1-4*01 HLA-A*02:01 B2M MHCI GLCTLVAML BLMF1 EBV PMID:34811538 tetramer-sort yes amplicon-seq effector memory T cells T1D T1D_1 chip0420_240959 PBMC +3845 CASSSGGNVDTQYF TRBV7-3*01 TRBJ2-3*01 HLA-A*02:01 B2M MHCI GLCTLVAML BLMF1 EBV PMID:34811538 tetramer-sort yes amplicon-seq effector memory T cells T1D T1D_1 chip0420_739879 PBMC +3846 CAGGRSHGNLIF TRAV27*01 TRAJ42*01 HLA-A*02:01 B2M MHCI GILGFVFTL M1 InfluenzaA PMID:34811538 tetramer-sort yes amplicon-seq transitional T cells between effector and memory populations healthy healthy_1 chip0420_707045 PBMC +3847 CGPDWGGGSQGNLIF TRAV30*01 TRAJ42*01 HLA-A*02:01 B2M MHCI GILGFVFTL M1 InfluenzaA PMID:34811538 tetramer-sort yes amplicon-seq transitional T cells between effector and memory populations healthy healthy_1 chip0420_675618 PBMC +3848 CAMREGIa?tAGNMLTF TRAV14/DV4*01 TRAJ39*01 CASSAGTNEQFF TRBV9*01 TRBJ2-1*01 HLA-A*02:01 B2M MHCI ALAGIGILTV MART1 HomoSapiens PMID:34811538 tetramer-sort yes amplicon-seq Naive T cells healthy healthy_2 chip0420_28580 PBMC +3849 CSVGSRGTNEKLFF TRBV29-1*01 TRBJ1-4*01 HLA-A*02:01 B2M MHCI GLCTLVAML BLMF1 EBV PMID:34811538 tetramer-sort yes amplicon-seq effector T cells T1D T1D_1 chip0420_441785 PBMC +3850 CSVCILAQNYNEQFF TRBV29-1*01 TRBJ2-1*01 HLA-A*02:01 B2M MHCI LLAGIGTVPI PGT HomoSapiens PMID:34811538 tetramer-sort yes amplicon-seq effector T cells T1D T1D_2 chip0420_214487 PBMC +3852 CASSPVSGSTYEQYF TRBV3-1*01 TRBJ2-7*01 HLA-A*02:01 B2M MHCI GLCTLVAML BLMF1 EBV PMID:34811538 tetramer-sort yes amplicon-seq effector memory T cells T1D T1D_1 chip0420_128976 PBMC +3856 CVVNGRDSSYKLIF TRAV12-1*01 TRAJ12*01 CASSAGRgt??ccTRGPQYF TRBV2*01 TRBJ2-5*01 HLA-A*02:01 B2M MHCI GLCTLVAML BLMF1 EBV PMID:34811538 tetramer-sort yes amplicon-seq effector memory T cells T1D T1D_1 chip0420_711322 PBMC +3857 CASRMGAGDTQYF TRBV10-2*01 TRBJ2-3*01 HLA-A*02:01 B2M MHCI GLCTLVAML BLMF1 EBV PMID:34811538 tetramer-sort yes amplicon-seq effector memory T cells T1D T1D_2 chip0420_628000 PBMC +3858 CASSVGGEACEQYF TRBV9*01 TRBJ2-7*01 HLA-A*02:01 B2M MHCI GLCTLVAML BLMF1 EBV PMID:34811538 tetramer-sort yes amplicon-seq effector memory T cells T1D T1D_1 chip0420_187538 PBMC +3859 CGPEEPNDYKLSF TRAV30*01 TRAJ20*01 CASSTGQLSNTGELFF TRBV9*01 TRBJ2-2*01 HLA-A*02:01 B2M MHCI GLCTLVAML BLMF1 EBV PMID:34811538 tetramer-sort yes amplicon-seq effector T cells T1D T1D_1 chip0420_139669 PBMC +3860 CSVGTGGTNEKLFF TRBV29-1*01 TRBJ1-4*01 HLA-A*02:01 B2M MHCI GLCTLVAML BLMF1 EBV PMID:34811538 tetramer-sort yes amplicon-seq effector memory T cells T1D T1D_2 chip0420_130450 PBMC +3861 CASSFLGSINTEAFF TRBV27*01 TRBJ1-1*01 HLA-A*02:01 B2M MHCI KLQVFLIVL IAPP HomoSapiens PMID:34811538 tetramer-sort yes amplicon-seq effector T cells T1D T1D_1 chip0420_93013 PBMC +3862 CASSSRSTDTQYF TRBV19*01 TRBJ2-3*01 HLA-A*02:01 B2M MHCI GILGFVFTL M1 InfluenzaA PMID:34811538 tetramer-sort yes amplicon-seq transitional T cells between effector and memory populations T1D T1D_1 chip0420_787966 PBMC +3863 CATQQGRDSQPQHF TRBV28*01 TRBJ1-5*01 HLA-A*02:01 B2M MHCI GLCTLVAML BLMF1 EBV PMID:34811538 tetramer-sort yes amplicon-seq effector T cells T1D T1D_1 chip0420_69076 PBMC +3865 CASRMGAGDTQYF TRBV10-2*01 TRBJ2-3*01 HLA-A*02:01 B2M MHCI GLCTLVAML BLMF1 EBV PMID:34811538 tetramer-sort yes amplicon-seq effector memory T cells T1D T1D_2 chip0420_399029 PBMC +3872 CASSPDQTSSYNEQFF TRBV27*01 TRBJ2-1*01 HLA-A*02:01 B2M MHCI YVLDHLIVV BRLF1 EBV PMID:34811538 tetramer-sort yes amplicon-seq effector T cells T1D T1D_1 chip0420_389596 PBMC +3874 CVVNGVDDQGGKLVF TRAV12-1*01 TRAJ23*01 HLA-A*02:01 B2M MHCI GLCTLVAML BLMF1 EBV PMID:34811538 tetramer-sort yes amplicon-seq effector memory T cells T1D T1D_1 chip0420_450327 PBMC +3875 CASSPVSGSTYEQYF TRBV3-1*01 TRBJ2-7*01 HLA-A*02:01 B2M MHCI GLCTLVAML BLMF1 EBV PMID:34811538 tetramer-sort yes amplicon-seq effector memory T cells T1D T1D_1 chip0420_161042 PBMC +3876 CASSSPGHGSPHF TRBV12-3*01,TRBV12-4*01 TRBJ1-5*01 HLA-A*02:01 B2M MHCI LLAGIGTVPI PGT HomoSapiens PMID:34811538 tetramer-sort yes amplicon-seq Naive T cells T1D T1D_1 chip0420_21973 PBMC +3877 CAFMQGAGGTSYRKLTF TRAV38-1*01 TRAJ52*01 HLA-A*02:01 B2M MHCI GILGFVFTL M1 InfluenzaA PMID:34811538 tetramer-sort yes amplicon-seq transitional T cells between effector and memory populations T1D T1D_1 chip0420_827196 PBMC +3878 CASSSGQVLPNEQFF TRBV2*01 TRBJ2-1*01 HLA-A*02:01 B2M MHCI GLCTLVAML BLMF1 EBV PMID:34811538 tetramer-sort yes amplicon-seq effector memory T cells T1D T1D_1 chip0420_762794 PBMC +3879 CASRMGAGDTQYF TRBV10-2*01 TRBJ2-3*01 HLA-A*02:01 B2M MHCI GLCTLVAML BLMF1 EBV PMID:34811538 tetramer-sort yes amplicon-seq effector memory T cells T1D T1D_2 chip0420_229987 PBMC +3881 CAENKGGGSQGNLIF TRAV13-2*01 TRAJ42*01 HLA-A*02:01 B2M MHCI GILGFVFTL M1 InfluenzaA PMID:34811538 tetramer-sort yes amplicon-seq transitional T cells between effector and memory populations healthy healthy_1 chip0420_539025 PBMC +3882 CASSIRSSYEQYF TRBV19*01 TRBJ2-7*01 HLA-A*02:01 B2M MHCI GILGFVFTL M1 InfluenzaA PMID:34811538 tetramer-sort yes amplicon-seq transitional T cells between effector and memory populations healthy healthy_1 chip0420_120365 PBMC +3883 CASISLDPLYF TRBV2*01 TRBJ2-5*01 HLA-A*02:01 B2M MHCI GILGFVFTL M1 InfluenzaA PMID:34811538 tetramer-sort yes amplicon-seq transitional T cells between effector and memory populations healthy healthy_1 chip0420_641661 PBMC +3884 CATQQGRDSQPQHF TRBV28*01 TRBJ1-5*01 HLA-A*02:01 B2M MHCI GLCTLVAML BLMF1 EBV PMID:34811538 tetramer-sort yes amplicon-seq effector memory T cells T1D T1D_1 chip0420_401511 PBMC +3885 CASSPVSGSTYEQYF TRBV3-1*01 TRBJ2-7*01 HLA-A*02:01 B2M MHCI GLCTLVAML BLMF1 EBV PMID:34811538 tetramer-sort yes amplicon-seq effector T cells T1D T1D_1 chip0420_220304 PBMC +3886 CASQPRDRGTNEQFF TRBV6-1*01 TRBJ2-1*01 HLA-A*02:01 B2M MHCI LLAGIGTVPI PGT HomoSapiens PMID:34811538 tetramer-sort yes amplicon-seq Naive T cells healthy healthy_1 chip0420_38097 PBMC +3887 CAVPEGGGSQGNLIF TRAV12-2*01 TRAJ42*01 CASISLDPLYF TRBV2*01 TRBJ2-5*01 HLA-A*02:01 B2M MHCI GILGFVFTL M1 InfluenzaA PMID:34811538 tetramer-sort yes amplicon-seq effector T cells healthy healthy_1 chip0420_831157 PBMC +3889 CALHREGKSTF TRAV8-1*01 TRAJ27*01 HLA-A*02:01 B2M MHCI YVLDHLIVV BRLF1 EBV PMID:34811538 tetramer-sort yes amplicon-seq transitional T cells between effector and memory populations T1D T1D_1 chip0420_714643 PBMC +3890 CASSPVSGSTYEQYF TRAV9-1*01 TRAJ40*01 CASSPVSGSTYEQYF TRBV3-1*01 TRBJ2-7*01 HLA-A*02:01 B2M MHCI GLCTLVAML BLMF1 EBV PMID:34811538 tetramer-sort yes amplicon-seq effector memory T cells T1D T1D_1 chip0420_537728 PBMC +3891 CASSSPEYEQYF TRBV12-3*01,TRBV12-4*01 TRBJ2-7*01 HLA-A*02:01 B2M MHCI RGPGRAFVTI GP160 HIV-1 PMID:34811538 tetramer-sort yes amplicon-seq Naive T cells T1D T1D_1 chip0420_794536 PBMC +3892 CAGAGSQGNLIF TRAV27*01 TRAJ42*01 HLA-A*02:01 B2M MHCI GILGFVFTL M1 InfluenzaA PMID:34811538 tetramer-sort yes amplicon-seq transitional T cells between effector and memory populations healthy healthy_1 chip0420_361524 PBMC +3893 CASSSDGMNTEAFF TRBV10-2*01 TRBJ1-1*01 HLA-A*02:01 B2M MHCI CLGGLLTMV LMP2A EBV PMID:34811538 tetramer-sort yes amplicon-seq effector memory T cells T1D T1D_2 chip0420_530107 PBMC +3894 CSARTAVGNGYTF TRBV20-1*01 TRBJ1-2*01 HLA-A*02:01 B2M MHCI GLCTLVAML BLMF1 EBV PMID:34811538 tetramer-sort yes amplicon-seq effector T cells T1D T1D_1 chip0420_166640 PBMC +3895 CASSSDGMNTEAFF TRBV10-2*01 TRBJ1-1*01 HLA-A*02:01 B2M MHCI CLGGLLTMV LMP2A EBV PMID:34811538 tetramer-sort yes amplicon-seq central memory T cells T1D T1D_2 chip0420_427236 PBMC +3896 CASSLEDQASSYEQYF TRBV5-1*01 TRBJ2-7*01 HLA-A*02:01 B2M MHCI CLGGLLTMV LMP2A EBV PMID:34811538 tetramer-sort yes amplicon-seq effector memory T cells T1D T1D_2 chip0420_25276 PBMC +3897 CSVGSRGTNEKLFF TRBV29-1*01 TRBJ1-4*01 HLA-A*02:01 B2M MHCI GLCTLVAML BLMF1 EBV PMID:34811538 tetramer-sort yes amplicon-seq effector T cells T1D T1D_1 chip0420_712960 PBMC +3902 CSVAGTSGLGEQYF TRBV29-1*01 TRBJ2-7*01 HLA-A*02:01 B2M MHCI LLAGIGTVPI PGT HomoSapiens PMID:34811538 tetramer-sort yes amplicon-seq Naive T cells T1D T1D_1 chip0420_566007 PBMC +3903 CALIYYGGSQGNLIF TRAV19*01 TRAJ42*01 CATFPDGSYEQYF TRBV28*01 TRBJ2-7*01 HLA-A*02:01 B2M MHCI YLLEMLWRL LMP1 EBV PMID:34811538 tetramer-sort yes amplicon-seq effector memory T cells T1D T1D_1 chip0420_432161 PBMC +3904 CARSFLFPR??cRERNQPQHF TRBV7-6*01 TRBJ1-5*01 HLA-A*02:01 B2M MHCI VMNILLQYV GAD65 HomoSapiens PMID:34811538 tetramer-sort yes amplicon-seq Naive T cells healthy healthy_1 chip0420_62992 PBMC +3905 CSVGTGGTNEKLFF TRBV29-1*01 TRBJ1-4*01 HLA-A*02:01 B2M MHCI GLCTLVAML BLMF1 EBV PMID:34811538 tetramer-sort yes amplicon-seq effector T cells T1D T1D_2 chip0420_740880 PBMC +3906 CAAWGRTGTGELFF TRBV28*01 TRBJ2-2*01 HLA-A*02:01 B2M MHCI LLAGIGTVPI PGT HomoSapiens PMID:34811538 tetramer-sort yes amplicon-seq Naive T cells healthy healthy_1 chip0420_311333 PBMC +3907 CADLECW??cDCRALNW TRAV36/DV7*01 TRAJ38*01 HLA-A*02:01 B2M MHCI GLCTLVAML BLMF1 EBV PMID:34811538 tetramer-sort yes amplicon-seq effector T cells T1D T1D_1 chip0420_154842 PBMC +3908 CASSIRSSYEQYF TRBV19*01 TRBJ2-7*01 HLA-A*02:01 B2M MHCI GILGFVFTL M1 InfluenzaA PMID:34811538 tetramer-sort yes amplicon-seq transitional T cells between effector and memory populations healthy healthy_1 chip0420_130071 PBMC +3909 CASSPDQTSSYNEQFF TRBV27*01 TRBJ2-1*01 HLA-A*02:01 B2M MHCI YVLDHLIVV BRLF1 EBV PMID:34811538 tetramer-sort yes amplicon-seq effector memory T cells T1D T1D_1 chip0420_3528 PBMC +3910 RAVSDRAGGFKTIF TRAV8-4*01 TRAJ9*01 HLA-A*02:01 B2M MHCI GILGFVFTL M1 InfluenzaA PMID:34811538 tetramer-sort yes amplicon-seq transitional T cells between effector and memory populations T1D T1D_1 chip0420_830414 PBMC +3911 CAERMDSSYKLIF TRAV5*01 TRAJ12*01 CASSQGLAGGGYEQYF TRBV4-2*01 TRBJ2-7*01 HLA-A*01:01 B2M MHCI VTDAAHLLI ZNT8 HomoSapiens PMID:34811538 tetramer-sort yes amplicon-seq Naive T cells healthy healthy_2 chip0420_726224 PBMC +3912 CASSMRSAYEQYF TRBV19*01 TRBJ2-7*01 HLA-A*02:01 B2M MHCI GILGFVFTL M1 InfluenzaA PMID:34811538 tetramer-sort yes amplicon-seq transitional T cells between effector and memory populations T1D T1D_1 chip0420_116956 PBMC +3916 CASSSGGNVDTQYF TRBV7-3*01 TRBJ2-3*01 HLA-A*02:01 B2M MHCI GLCTLVAML BLMF1 EBV PMID:34811538 tetramer-sort yes amplicon-seq effector T cells T1D T1D_1 chip0420_386223 PBMC +3917 CAFWFtg??caRPLPF TRAV1-1*01 TRAJ22*01 HLA-A*02:01 B2M MHCI KMYAFTLES ZNT8 HomoSapiens PMID:34811538 tetramer-sort yes amplicon-seq transitional T cells between effector and memory populations T1D T1D_1 chip0420_536353 PBMC +3918 CAVEPAYY??cSGTYKYIF TRAV2*01 TRAJ40*01 CARSVQEGNYGYTF TRBV6-1*01 TRBJ1-2*01 HLA-A*02:01 B2M MHCI FLYALALLL LMP2 EBV PMID:34811538 tetramer-sort yes amplicon-seq effector memory T cells T1D T1D_1 chip0420_349145 PBMC +3920 CASSPGDARGEQYF TRBV5-6*01 TRBJ2-7*01 HLA-A*02:01 B2M MHCI YLLEMLWRL LMP1 EBV PMID:34811538 tetramer-sort yes amplicon-seq effector memory T cells T1D T1D_1 chip0420_282670 PBMC +3924 CAESTSGGKLIF TRAV5*01 TRAJ23*01 CSVGTGGTNEKLFF TRBV29-1*01 TRBJ1-4*01 HLA-A*02:01 B2M MHCI GLCTLVAML BLMF1 EBV PMID:34811538 tetramer-sort yes amplicon-seq effector memory T cells T1D T1D_2 chip0420_213036 PBMC +3927 CVVNGRDSSYKLLF TRAV12-1*01 TRAJ12*01 HLA-A*02:01 B2M MHCI GLCTLVAML BLMF1 EBV PMID:34811538 tetramer-sort yes amplicon-seq effector T cells T1D T1D_2 chip0420_326174 PBMC +3929 CASSQSPGGTQYF TRBV14*01 TRBJ2-3*01 HLA-A*02:01 B2M MHCI GLCTLVAML BLMF1 EBV PMID:34811538 tetramer-sort yes amplicon-seq effector memory T cells T1D T1D_1 chip0420_703921 PBMC +3930 CSARDGTGNGYTF TRBV20-1*01 TRBJ1-2*01 HLA-A*02:01 B2M MHCI GLCTLVAML BLMF1 EBV PMID:34811538 tetramer-sort yes amplicon-seq effector memory T cells T1D T1D_1 chip0420_371510 PBMC +3931 CASSAEQGMGAFF TRBV19*01 TRBJ1-1*01 HLA-A*02:01 B2M MHCI LLAGIGTVPI PGT HomoSapiens PMID:34811538 tetramer-sort yes amplicon-seq Naive T cells T1D T1D_1 chip0420_489784 PBMC +3933 CSAGGGGTEAFF TRBV29-1*01 TRBJ1-1*01 HLA-A*02:01 B2M MHCI LLAGIGTVPI PGT HomoSapiens PMID:34811538 tetramer-sort yes amplicon-seq Naive T cells T1D T1D_1 chip0420_14753 PBMC +3937 CSVGTGGTNEKLFF TRBV29-1*01 TRBJ1-4*01 HLA-A*02:01 B2M MHCI GLCTLVAML BLMF1 EBV PMID:34811538 tetramer-sort yes amplicon-seq effector memory T cells T1D T1D_2 chip0420_380191 PBMC +3938 CSAIDTSGTGGYEQYF TRBV20-1*01 TRBJ2-7*01 HLA-A*02:01 B2M MHCI LLFNILGGWV NS4B HCV PMID:34811538 tetramer-sort yes amplicon-seq central memory T cells T1D T1D_1 chip0420_159911 PBMC +3939 CASSSGLVAPGELFF TRBV2*01 TRBJ2-2*01 HLA-A*02:01 B2M MHCI GLCTLVAML BLMF1 EBV PMID:34811538 tetramer-sort yes amplicon-seq effector memory T cells T1D T1D_2 chip0420_188542 PBMC +3941 CAMREDNAGNMLTF TRAV14/DV4*01 TRAJ39*01 HLA-A*02:01 B2M MHCI GILGFVFTL M1 InfluenzaA PMID:34811538 tetramer-sort yes amplicon-seq transitional T cells between effector and memory populations T1D T1D_1 chip0420_128692 PBMC +3942 CGTQENDSWGKLQF TRAV30*01 TRAJ24*01 CASSVRAGETQYF TRBV19*01 TRBJ2-5*01 HLA-A*02:01 B2M MHCI GILGFVFTL M1 InfluenzaA PMID:34811538 tetramer-sort yes amplicon-seq transitional T cells between effector and memory populations T1D T1D_1 chip0420_403071 PBMC +3944 CASSSGGNVDTQYF TRBV7-3*01 TRBJ2-3*01 HLA-A*02:01 B2M MHCI GLCTLVAML BLMF1 EBV PMID:34811538 tetramer-sort yes amplicon-seq effector memory T cells T1D T1D_1 chip0420_40307 PBMC +3945 CSVGTGGTNEKLFF TRBV29-1*01 TRBJ1-4*01 HLA-A*02:01 B2M MHCI GLCTLVAML BLMF1 EBV PMID:34811538 tetramer-sort yes amplicon-seq effector T cells T1D T1D_2 chip0420_871562 PBMC +3946 CASSFGAGELFF TRBV19*01 TRBJ2-2*01 HLA-A*02:01 B2M MHCI GILGFVFTL M1 InfluenzaA PMID:34811538 tetramer-sort yes amplicon-seq transitional T cells between effector and memory populations T1D T1D_1 chip0420_747283 PBMC +3947 CATKLDSNNEQFF TRBV6-1*01 TRBJ2-1*01 HLA-A*02:01 B2M MHCI KLVALGINNV POL HCV PMID:34811538 tetramer-sort yes amplicon-seq Naive T cells T1D T1D_1 chip0420_420658 PBMC +3948 CASSPVSGSTYEQYF TRBV3-1*01 TRBJ2-7*01 HLA-A*02:01 B2M MHCI GLCTLVAML BLMF1 EBV PMID:34811538 tetramer-sort yes amplicon-seq effector memory T cells T1D T1D_1 chip0420_670005 PBMC +3950 CSVGTGGTNEKLFF TRBV29-1*01 TRBJ1-4*01 HLA-A*02:01 B2M MHCI GLCTLVAML BLMF1 EBV PMID:34811538 tetramer-sort yes amplicon-seq effector memory T cells T1D T1D_2 chip0420_723632 PBMC +3951 CAVSGGAGKSTF TRAV12-2*01 TRAJ27*01 CASSRPGQGVEKLFF TRBV7-2*01 TRBJ1-4*01 HLA-A*02:01 B2M MHCI LLAGIGTVPI PGT HomoSapiens PMID:34811538 tetramer-sort yes amplicon-seq Naive T cells T1D T1D_1 chip0420_266595 PBMC +3952 CSVGSRGTNEKLFF TRBV29-1*01 TRBJ1-4*01 HLA-A*02:01 B2M MHCI GLCTLVAML BLMF1 EBV PMID:34811538 tetramer-sort yes amplicon-seq effector memory T cells T1D T1D_1 chip0420_879464 PBMC +3953 CALLGSSNTGKLIF TRAV19*01 TRAJ37*01 CASSLHLRQDEQPQHF TRBV28*01 TRBJ1-5*01 HLA-B*08:01 B2M MHCI QAKWRLQTL EBNA3A EBV PMID:34811538 tetramer-sort yes amplicon-seq effector memory T cells T1D T1D_3 chip0420_869038 PBMC +3954 CVVNGRDSSYKLIF TRAV12-1*01 TRAJ12*01 CASSDGRVHPGTQYF TRBV2*01 TRBJ2-5*01 HLA-A*02:01 B2M MHCI GLCTLVAML BLMF1 EBV PMID:34811538 tetramer-sort yes amplicon-seq effector memory T cells T1D T1D_1 chip0420_87888 PBMC +3955 CATSAVGVPTEAFF TRBV24-1*01 TRBJ1-1*01 HLA-A*02:01 B2M MHCI GILGFVFTL M1 InfluenzaA PMID:34811538 tetramer-sort yes amplicon-seq transitional T cells between effector and memory populations T1D T1D_1 chip0420_370959 PBMC +3956 CASSTGQLSSYEQYF TRBV19*01 TRBJ2-7*01 HLA-A*02:01 B2M MHCI LLAGIGTVPI PGT HomoSapiens PMID:34811538 tetramer-sort yes amplicon-seq Naive T cells T1D T1D_1 chip0420_20485 PBMC +3957 CSVGSRGTNEKLFF TRBV29-1*01 TRBJ1-4*01 HLA-A*02:01 B2M MHCI GLCTLVAML BLMF1 EBV PMID:34811538 tetramer-sort yes amplicon-seq effector memory T cells T1D T1D_1 chip0420_638157 PBMC +3958 CGPAEPNDYKLSF TRAV30*01 TRAJ20*01 HLA-A*02:01 B2M MHCI GLCTLVAML BLMF1 EBV PMID:34811538 tetramer-sort yes amplicon-seq effector T cells T1D T1D_1 chip0420_31003 PBMC +3960 CAAGGTGARLMF TRAV12-2*01 TRAJ31*01 HLA-A*02:01 B2M MHCI LLAGIGTVPI PGT HomoSapiens PMID:34811538 tetramer-sort yes amplicon-seq transitional T cells between effector and memory populations T1D T1D_1 chip0420_275854 PBMC +3962 CILRRYGGSQGNLIF TRAV26-2*01 TRAJ42*01 HLA-A*02:01 B2M MHCI GLCTLVAML BLMF1 EBV PMID:34811538 tetramer-sort yes amplicon-seq effector T cells T1D T1D_1 chip0420_565479 PBMC +3963 CASSTGQLSNTGELFF TRBV9*01 TRBJ2-2*01 HLA-A*02:01 B2M MHCI GLCTLVAML BLMF1 EBV PMID:34811538 tetramer-sort yes amplicon-seq effector memory T cells T1D T1D_1 chip0420_306489 PBMC +3964 CASSTRSSDEQFF TRBV19*01 TRBJ2-1*01 HLA-A*02:01 B2M MHCI GILGFVFTL M1 InfluenzaA PMID:34811538 tetramer-sort yes amplicon-seq effector T cells T1D T1D_1 chip0420_782141 PBMC +3965 CASSSSVVRDRDENTIYF TRBV4-1*01 TRBJ1-3*01 HLA-A*02:01 B2M MHCI LLAGIGTVPI PGT HomoSapiens PMID:34811538 tetramer-sort yes amplicon-seq Naive T cells T1D T1D_1 chip0420_494514 PBMC +3966 CAAKPNPTAGLSPF TRAV23/DV6*01 TRAJ27*01 LASSLGDSPLHF TRBV12-3*01,TRBV12-4*01 TRBJ1-6*01 HLA-A*02:01 B2M MHCI LLAGIGTVPI PGT HomoSapiens PMID:34811538 tetramer-sort yes amplicon-seq central memory T cells T1D T1D_2 chip0420_78869 PBMC +3967 CATDPYSGNTPLVF TRAV17*01 TRAJ29*01 CASRSRYQETQYF TRBV2*01 TRBJ2-5*01 HLA-A*02:01 B2M MHCI IQATVMIIV ZNT8 HomoSapiens PMID:34811538 tetramer-sort yes amplicon-seq Naive T cells T1D T1D_1 chip0420_839139 PBMC +3968 CASSPDQTSSYNEQFF TRBV27*01 TRBJ2-1*01 HLA-A*02:01 B2M MHCI YVLDHLIVV BRLF1 EBV PMID:34811538 tetramer-sort yes amplicon-seq effector memory T cells T1D T1D_1 chip0420_546177 PBMC +3970 CALYNTDKLIF TRAV9-2*01 TRAJ34*01 HLA-A*02:01 B2M MHCI GLCTLVAML BLMF1 EBV PMID:34811538 tetramer-sort yes amplicon-seq effector T cells T1D T1D_1 chip0420_759812 PBMC +3972 CASSPDQTSSYNEQFF TRBV27*01 TRBJ2-1*01 HLA-A*02:01 B2M MHCI YVLDHLIVV BRLF1 EBV PMID:34811538 tetramer-sort yes amplicon-seq spike-in HCV-specific clone T1D T1D_1 chip0420_773172 PBMC +3974 CGPEEPNDYKLSF TRAV30*01 TRAJ20*01 CASSTGQLSNTGELFF TRBV9*01 TRBJ2-2*01 HLA-A*02:01 B2M MHCI GLCTLVAML BLMF1 EBV PMID:34811538 tetramer-sort yes amplicon-seq effector T cells T1D T1D_1 chip0420_666268 PBMC +3975 CASSEAGMNTEAFF TRBV10-2*01 TRBJ1-1*01 HLA-A*02:01 B2M MHCI CLGGLLTMV LMP2A EBV PMID:34811538 tetramer-sort yes amplicon-seq effector memory T cells T1D T1D_2 chip0420_199211 PBMC +3976 CASSTGQLSNTGELFF TRBV9*01 TRBJ2-2*01 HLA-A*02:01 B2M MHCI GLCTLVAML BLMF1 EBV PMID:34811538 tetramer-sort yes amplicon-seq effector memory T cells T1D T1D_1 chip0420_846930 PBMC +3977 CAVMGREYGNKLVF TRAV12-2*01 TRAJ47*01 CSVSGTSGSAWGYEQFF TRBV29-1*01 TRBJ2-1*01 HLA-A*02:01 B2M MHCI VMNILLQYV GAD65 HomoSapiens PMID:34811538 tetramer-sort yes amplicon-seq Naive T cells T1D T1D_1 chip0420_273121 PBMC +3979 CASRAGAGDTQYF TRBV10-2*01 TRBJ2-3*01 HLA-A*02:01 B2M MHCI GLCTLVAML BLMF1 EBV PMID:34811538 tetramer-sort yes amplicon-seq effector memory T cells T1D T1D_2 chip0420_9560 PBMC +3980 CSVGGSFYGYTF TRBV29-1*01 TRBJ1-2*01 HLA-A*02:01 B2M MHCI GLCTLVAML BLMF1 EBV PMID:34811538 tetramer-sort yes amplicon-seq effector memory T cells T1D T1D_2 chip0420_601421 PBMC +3981 CASSPDQTSSYNEQFF TRBV27*01 TRBJ2-1*01 HLA-A*02:01 B2M MHCI YVLDHLIVV BRLF1 EBV PMID:34811538 tetramer-sort yes amplicon-seq effector T cells T1D T1D_1 chip0420_476450 PBMC +3982 CASSDRQGTDTQYF TRBV25-1*01 TRBJ2-3*01 HLA-A*02:01 B2M MHCI LLAGIGTVPI PGT HomoSapiens PMID:34811538 tetramer-sort yes amplicon-seq Naive T cells T1D T1D_1 chip0420_483300 PBMC +3984 CASSSGGNVDTQYF TRBV7-3*01 TRBJ2-3*01 HLA-A*02:01 B2M MHCI GLCTLVAML BLMF1 EBV PMID:34811538 tetramer-sort yes amplicon-seq effector memory T cells T1D T1D_1 chip0420_300218 PBMC +3987 CASSAPGHEFRGF TRBV2*01 TRBJ2-4*01 HLA-A*02:01 B2M MHCI LLAGIGTVPI PGT HomoSapiens PMID:34811538 tetramer-sort yes amplicon-seq Naive T cells T1D T1D_1 chip0420_645653 PBMC +3989 CASSTGQLSNTGELFF TRBV9*01 TRBJ2-2*01 HLA-A*02:01 B2M MHCI GLCTLVAML BLMF1 EBV PMID:34811538 tetramer-sort yes amplicon-seq effector T cells T1D T1D_1 chip0420_325712 PBMC +3991 CSVGSRGTNEKLFF TRBV29-1*01 TRBJ1-4*01 HLA-A*02:01 B2M MHCI GLCTLVAML BLMF1 EBV PMID:34811538 tetramer-sort yes amplicon-seq effector memory T cells T1D T1D_1 chip0420_240144 PBMC +3992 CGPAAPNDYKLSF TRAV30*01 TRAJ20*01 CASSTGQLSNTGELFF TRBV9*01 TRBJ2-2*01 HLA-A*02:01 B2M MHCI GLCTLVAML BLMF1 EBV PMID:34811538 tetramer-sort yes amplicon-seq effector memory T cells T1D T1D_1 chip0420_706945 PBMC +3993 WAFMTKAGCPGSGRLVF TRAV38-1*01 TRAJ52*01 CASSSGLVAPGELFF TRBV2*01 TRBJ2-2*01 HLA-A*02:01 B2M MHCI GILGFVFTL M1 InfluenzaA PMID:34811538 tetramer-sort yes amplicon-seq transitional T cells between effector and memory populations healthy healthy_1 chip0420_121376 PBMC +3994 CAVKGYDKIIF TRAV8-1*01 TRAJ30*01 HLA-A*02:01 B2M MHCI YVLDHLIVV BRLF1 EBV PMID:34811538 tetramer-sort yes amplicon-seq effector memory T cells T1D T1D_1 chip0420_878159 PBMC +3995 CASSPHLGAAAEQYF TRBV19*01 TRBJ2-7*01 HLA-A*02:01 B2M MHCI YVLDHLIVV BRLF1 EBV PMID:34811538 tetramer-sort yes amplicon-seq effector T cells T1D T1D_1 chip0420_398179 PBMC +3997 CAWRGVSGAYNEQFF TRBV30*01 TRBJ2-1*01 HLA-A*02:01 B2M MHCI YVLDHLIVV BRLF1 EBV PMID:34811538 tetramer-sort yes amplicon-seq effector memory T cells T1D T1D_1 chip0420_174587 PBMC +3998 CILRRYGGSQGNLIF TRAV26-2*01 TRAJ42*01 HLA-A*02:01 B2M MHCI GLCTLVAML BLMF1 EBV PMID:34811538 tetramer-sort yes amplicon-seq effector memory T cells T1D T1D_1 chip0420_12810 PBMC +3999 CAGGSNPEAFF TRBV7-9*01 TRBJ1-1*01 HLA-A*02:01 B2M MHCI ALAGIGILTV MART1 HomoSapiens PMID:34811538 tetramer-sort yes amplicon-seq Naive T cells T1D T1D_1 chip0420_849917 PBMC +4000 CSVGSRGTNEKLFF TRBV29-1*01 TRBJ1-4*01 HLA-A*02:01 B2M MHCI GLCTLVAML BLMF1 EBV PMID:34811538 tetramer-sort yes amplicon-seq effector T cells T1D T1D_1 chip0420_399088 PBMC +4002 CAVRDDRDDKIIF TRAV3*01 TRAJ30*01 HLA-A*02:01 B2M MHCI GLCTLVAML BLMF1 EBV PMID:34811538 tetramer-sort yes amplicon-seq effector memory T cells T1D T1D_2 chip0420_18841 PBMC +4004 CASSLAGSGELFL TRBV5-1*01 TRBJ2-2*01 HLA-A*02:01 B2M MHCI YVLDHLIVV BRLF1 EBV PMID:34811538 tetramer-sort yes amplicon-seq effector memory T cells T1D T1D_1 chip0420_643130 PBMC +4005 CASSSGLVAPGELFF TRBV2*01 TRBJ2-2*01 HLA-A*02:01 B2M MHCI GLCTLVAML BLMF1 EBV PMID:34811538 tetramer-sort yes amplicon-seq effector memory T cells T1D T1D_2 chip0420_587270 PBMC +4006 CAVEPAYY??cSGTYKYIF TRAV2*01 TRAJ40*01 CARSVPGGDYGYTF TRBV6-1*01 TRBJ1-2*01 HLA-A*02:01 B2M MHCI FLYALALLL LMP2 EBV PMID:34811538 tetramer-sort yes amplicon-seq effector memory T cells T1D T1D_1 chip0420_652936 PBMC +4009 CSVEGGGYNEQFF TRBV29-1*01 TRBJ2-1*01 HLA-A*02:01 B2M MHCI SLISGMWLL VP2 RotavirusA PMID:34811538 tetramer-sort yes amplicon-seq transitional T cells between effector and memory populations healthy healthy_1 chip0420_88086 PBMC +4011 CASSIRSSVAQYF TRBV19*01 TRBJ2-5*01 HLA-A*02:01 B2M MHCI GILGFVFTL M1 InfluenzaA PMID:34811538 tetramer-sort yes amplicon-seq transitional T cells between effector and memory populations T1D T1D_1 chip0420_766186 PBMC +4015 CATAISNFGNEKLTF TRAV12-3*01 TRAJ48*01 CASSSTSKDGILAKNIQYF TRBV5-1*01 TRBJ2-4*01 HLA-A*02:01 B2M MHCI LLAGIGTVPI PGT HomoSapiens PMID:34811538 tetramer-sort yes amplicon-seq Naive T cells T1D T1D_1 chip0420_402502 PBMC +4017 CASSSGLVAPGELFF TRBV2*01 TRBJ2-2*01 HLA-A*02:01 B2M MHCI GLCTLVAML BLMF1 EBV PMID:34811538 tetramer-sort yes amplicon-seq effector T cells T1D T1D_2 chip0420_756868 PBMC +4019 CAVSDIG??cRTYKYIF TRAV8-6*01 TRAJ40*01 CASSPDQTSSYNEQFF TRBV27*01 TRBJ2-1*01 HLA-A*02:01 B2M MHCI YVLDHLIVV BRLF1 EBV PMID:34811538 tetramer-sort yes amplicon-seq effector T cells T1D T1D_1 chip0420_873703 PBMC +4020 CSVGSRGTNEKLFF TRBV29-1*01 TRBJ1-4*01 HLA-A*02:01 B2M MHCI GLCTLVAML BLMF1 EBV PMID:34811538 tetramer-sort yes amplicon-seq central memory T cells T1D T1D_1 chip0420_56205 PBMC +4021 CASSTGSYGYTF TRBV19*01 TRBJ1-2*01 HLA-A*02:01 B2M MHCI GILGFVFTL M1 InfluenzaA PMID:34811538 tetramer-sort yes amplicon-seq transitional T cells between effector and memory populations healthy healthy_1 chip0420_18844 PBMC +4022 CASSLEGQASSYEQYF TRBV5-1*01 TRBJ2-7*01 HLA-A*02:01 B2M MHCI CLGGLLTMV LMP2A EBV PMID:34811538 tetramer-sort yes amplicon-seq central memory T cells T1D T1D_2 chip0420_634757 PBMC +4023 CAESTSGGKLIF TRAV5*01 TRAJ23*01 CSVGTGGTNEKLFF TRBV29-1*01 TRBJ1-4*01 HLA-A*02:01 B2M MHCI GLCTLVAML BLMF1 EBV PMID:34811538 tetramer-sort yes amplicon-seq effector memory T cells T1D T1D_2 chip0420_404256 PBMC +4026 CAVHDGGFQKLVF TRAV8-1*01 TRAJ8*01 CASRGLTGGGSEAFF TRBV28*01 TRBJ1-1*01 HLA-A*02:01 B2M MHCI YVLDHLIVV BRLF1 EBV PMID:34811538 tetramer-sort yes amplicon-seq effector T cells T1D T1D_1 chip0420_330622 PBMC +4028 CSVGSRGTNEKLFF TRBV29-1*01 TRBJ1-4*01 HLA-A*02:01 B2M MHCI GLCTLVAML BLMF1 EBV PMID:34811538 tetramer-sort yes amplicon-seq effector memory T cells T1D T1D_1 chip0420_604244 PBMC +4029 CGQLYG??cSSGYTF TRBV19*01 TRBJ1-2*01 HLA-A*02:01 B2M MHCI GILGFVFTL M1 InfluenzaA PMID:34811538 tetramer-sort yes amplicon-seq transitional T cells between effector and memory populations T1D T1D_1 chip0420_296599 PBMC +4030 CASSIRCSYEQYF TRBV19*01 TRBJ2-7*01 HLA-A*02:01 B2M MHCI GILGFVFTL M1 InfluenzaA PMID:34811538 tetramer-sort yes amplicon-seq transitional T cells between effector and memory populations T1D T1D_1 chip0420_260149 PBMC +4031 CASSIRSSYEQYP TRBV19*01 TRBJ2-7*01 HLA-A*02:01 B2M MHCI GILGFVFTL M1 InfluenzaA PMID:34811538 tetramer-sort yes amplicon-seq transitional T cells between effector and memory populations healthy healthy_1 chip0420_527399 PBMC +4032 CAVKDTDKPIF TRAV8-1*01 TRAJ34*01 CASSPHLGAAAEQYF TRBV19*01 TRBJ2-7*01 HLA-A*02:01 B2M MHCI YVLDHLIVV BRLF1 EBV PMID:34811538 tetramer-sort yes amplicon-seq effector memory T cells T1D T1D_1 chip0420_713945 PBMC +4033 CASSMRSAYEQYF TRBV19*01 TRBJ2-7*01 HLA-A*02:01 B2M MHCI GILGFVFTL M1 InfluenzaA PMID:34811538 tetramer-sort yes amplicon-seq transitional T cells between effector and memory populations T1D T1D_1 chip0420_395053 PBMC +4034 CSVGTRGTNEKLFF TRBV29-1*01 TRBJ1-4*01 HLA-A*02:01 B2M MHCI GLCTLVAML BLMF1 EBV PMID:34811538 tetramer-sort yes amplicon-seq effector T cells T1D T1D_2 chip0420_473389 PBMC +4036 CAVKDTDKLIF TRAV8-1*01 TRAJ34*01 HLA-A*02:01 B2M MHCI YVLDHLIVV BRLF1 EBV PMID:34811538 tetramer-sort yes amplicon-seq effector memory T cells T1D T1D_2 chip0420_266113 PBMC +4043 CASSPDQTSSYNEQFF TRBV27*01 TRBJ2-1*01 HLA-A*02:01 B2M MHCI YVLDHLIVV BRLF1 EBV PMID:34811538 tetramer-sort yes amplicon-seq effector T cells T1D T1D_1 chip0420_287402 PBMC +4045 CASSAGTVAPGELFF TRBV2*01 TRBJ2-2*01 HLA-A*02:01 B2M MHCI GLCTLVAML BLMF1 EBV PMID:34811538 tetramer-sort yes amplicon-seq effector memory T cells T1D T1D_1 chip0420_614707 PBMC +4046 CSVGTGGTNEKLFF TRBV29-1*01 TRBJ1-4*01 HLA-A*02:01 B2M MHCI GLCTLVAML BLMF1 EBV PMID:34811538 tetramer-sort yes amplicon-seq effector memory T cells T1D T1D_2 chip0420_55699 PBMC +4047 CASSFRSADTQYF TRBV19*01 TRBJ2-3*01 HLA-A*02:01 B2M MHCI GILGFVFTL M1 InfluenzaA PMID:34811538 tetramer-sort yes amplicon-seq transitional T cells between effector and memory populations T1D T1D_1 chip0420_380465 PBMC +4049 CSVGTGGTNEKLFF TRBV29-1*01 TRBJ1-4*01 HLA-A*02:01 B2M MHCI GLCTLVAML BLMF1 EBV PMID:34811538 tetramer-sort yes amplicon-seq effector T cells T1D T1D_2 chip0420_796945 PBMC +4051 CASSQSPGGTQYF TRBV14*01 TRBJ2-3*01 HLA-A*02:01 B2M MHCI GLCTLVAML BLMF1 EBV PMID:34811538 tetramer-sort yes amplicon-seq effector T cells T1D T1D_1 chip0420_872900 PBMC +4052 CAMREGAV??gRANSKLTF TRAV14/DV4*01 TRAJ56*01 CATHIDHWDRGLPQYF TRBV19*01 TRBJ2-3*01 HLA-A*02:01 B2M MHCI IQATVMIIV ZNT8 HomoSapiens PMID:34811538 tetramer-sort yes amplicon-seq central memory T cells healthy healthy_2 chip0420_715154 PBMC +4053 CAFLISNFGNEKLTF TRAV12-3*01 TRAJ48*01 CASSLSEQGRTEETQYF TRBV12-3*01,TRBV12-4*01 TRBJ2-5*01 HLA-A*02:01 B2M MHCI LLAGIGTVPI PGT HomoSapiens PMID:34811538 tetramer-sort yes amplicon-seq Naive T cells T1D T1D_1 chip0420_672552 PBMC +4057 CSVGSRGTNEKLFF TRBV29-1*01 TRBJ1-4*01 HLA-A*02:01 B2M MHCI GLCTLVAML BLMF1 EBV PMID:34811538 tetramer-sort yes amplicon-seq effector memory T cells T1D T1D_1 chip0420_76173 PBMC +4061 CAMSPSNFGNEKLTF TRAV12-3*01 TRAJ48*01 CASSEEGLSLGQYF TRBV6-1*01 TRBJ2-7*01 HLA-A*02:01 B2M MHCI LLAGIGTVPI PGT HomoSapiens PMID:34811538 tetramer-sort yes amplicon-seq Naive T cells T1D T1D_1 chip0420_122486 PBMC +4066 CSVTTDRNSNQPQHF TRBV29-1*01 TRBJ1-5*01 HLA-A*02:01 B2M MHCI GLCTLVAML BLMF1 EBV PMID:34811538 tetramer-sort yes amplicon-seq effector T cells T1D T1D_1 chip0420_192774 PBMC +4068 CSVGSRGTNEKLFF TRBV29-1*01 TRBJ1-4*01 HLA-A*02:01 B2M MHCI GLCTLVAML BLMF1 EBV PMID:34811538 tetramer-sort yes amplicon-seq effector memory T cells T1D T1D_1 chip0420_203535 PBMC +4071 CALGARPGGSYIPTF TRAV6*01 TRAJ6*01 HLA-A*02:01 B2M MHCI GLCTLVAML BLMF1 EBV PMID:34811538 tetramer-sort yes amplicon-seq effector memory T cells T1D T1D_1 chip0420_850651 PBMC +4073 CSVGTGGTNEKLSF TRBV29-1*01 TRBJ1-4*01 HLA-A*02:01 B2M MHCI GLCTLVAML BLMF1 EBV PMID:34811538 tetramer-sort yes amplicon-seq effector T cells T1D T1D_2 chip0420_496572 PBMC +4074 CASSGGAVAPSEQFF TRBV2*01 TRBJ2-1*01 HLA-A*02:01 B2M MHCI GLCTLVAML BLMF1 EBV PMID:34811538 tetramer-sort yes amplicon-seq effector memory T cells T1D T1D_2 chip0420_420422 PBMC +4075 RAMREDNAGNMLTF TRAV14/DV4*01 TRAJ39*01 HLA-A*02:01 B2M MHCI GILGFVFTL M1 InfluenzaA PMID:34811538 tetramer-sort yes amplicon-seq transitional T cells between effector and memory populations T1D T1D_1 chip0420_7306 PBMC +4076 CAAYAGNMLTF TRAV29/DV5*01 TRAJ39*01 CASRAGAGDTQYF TRBV10-2*01 TRBJ2-3*01 HLA-A*02:01 B2M MHCI GLCTLVAML BLMF1 EBV PMID:34811538 tetramer-sort yes amplicon-seq effector memory T cells T1D T1D_2 chip0420_94709 PBMC +4077 CSDRDGGNYGYTF TRBV29-1*01 TRBJ1-2*01 HLA-A*02:01 B2M MHCI YVLDHLIVV BRLF1 EBV PMID:34811538 tetramer-sort yes amplicon-seq effector memory T cells T1D T1D_2 chip0420_509695 PBMC +4078 CASSLDLQDSYEQYF TRBV11-2*01 TRBJ2-7*01 HLA-A*02:01 B2M MHCI VAANIVLTV ZNT8 HomoSapiens PMID:34811538 tetramer-sort yes amplicon-seq Naive T cells T1D T1D_1 chip0420_317698 PBMC +4079 CASSSGLVAPGELFF TRBV2*01 TRBJ2-2*01 HLA-A*02:01 B2M MHCI GLCTLVAML BLMF1 EBV PMID:34811538 tetramer-sort yes amplicon-seq effector memory T cells T1D T1D_2 chip0420_59287 PBMC +4080 LCQ*YKca??gtSYEQYF TRBV19*01 TRBJ2-7*01 HLA-A*02:01 B2M MHCI GILGFVFTL M1 InfluenzaA PMID:34811538 tetramer-sort yes amplicon-seq effector T cells healthy healthy_1 chip0420_813393 PBMC +4081 CVVNGEDSSYKLIF TRAV12-1*01 TRAJ12*01 CASSSGQVLPNEQFF TRBV2*01 TRBJ2-1*01 HLA-A*02:01 B2M MHCI GLCTLVAML BLMF1 EBV PMID:34811538 tetramer-sort yes amplicon-seq effector memory T cells T1D T1D_1 chip0420_481470 PBMC +4082 CASGLRDTGPYEQYF TRBV13*01 TRBJ2-7*01 HLA-A*02:01 B2M MHCI VIVMLTPLV PTPRN HomoSapiens PMID:34811538 tetramer-sort yes amplicon-seq Naive T cells T1D T1D_1 chip0420_154791 PBMC +4083 CASSIRSAYEQYF TRBV19*01 TRBJ2-7*01 HLA-A*02:01 B2M MHCI GILGFVFTL M1 InfluenzaA PMID:34811538 tetramer-sort yes amplicon-seq transitional T cells between effector and memory populations T1D T1D_1 chip0420_783073 PBMC +4084 CASNLAGNNEQFF TRBV9*01 TRBJ2-1*01 HLA-A*02:01 B2M MHCI GLCTLVAML BLMF1 EBV PMID:34811538 tetramer-sort yes amplicon-seq effector memory T cells T1D T1D_2 chip0420_713143 PBMC +4085 CASSPVSGSTYEQYF TRBV3-1*01 TRBJ2-7*01 HLA-A*02:01 B2M MHCI GLCTLVAML BLMF1 EBV PMID:34811538 tetramer-sort yes amplicon-seq effector T cells T1D T1D_1 chip0420_189313 PBMC +4086 CASSSGLVAPGELFF TRBV2*01 TRBJ2-2*01 HLA-A*02:01 B2M MHCI GLCTLVAML BLMF1 EBV PMID:34811538 tetramer-sort yes amplicon-seq effector memory T cells T1D T1D_2 chip0420_544678 PBMC +4087 CASSSGVSGELFF TRBV7-8*01 TRBJ2-2*01 HLA-A*02:01 B2M MHCI ALAGIGILTV MART1 HomoSapiens PMID:34811538 tetramer-sort yes amplicon-seq Naive T cells healthy healthy_1 chip0420_550552 PBMC +4088 CAVFEDSNYQLIW TRAV8-1*01 TRAJ33*01 HLA-A*02:01 B2M MHCI RGPGRAFVTI GP160 HIV-1 PMID:34811538 tetramer-sort yes amplicon-seq effector memory T cells T1D T1D_2 chip0420_310159 PBMC +4089 CASSTGQLSNTGELFF TRBV9*01 TRBJ2-2*01 HLA-A*02:01 B2M MHCI GLCTLVAML BLMF1 EBV PMID:34811538 tetramer-sort yes amplicon-seq effector T cells T1D T1D_1 chip0420_307303 PBMC +4090 CATAGVSGYSTLTF TRAV17*01 TRAJ11*01 HLA-A*01:01 B2M MHCI HSNLNDATY NP InfluenzaA PMID:34811538 tetramer-sort yes amplicon-seq central memory T cells tet_neg chip0420_179687 PBMC +4091 CASSQKSPAag?RDERRETQYF TRBV4-3*01 TRBJ2-5*01 HLA-A*02:01 B2M MHCI LLSLFSLWL ZNT8 HomoSapiens PMID:34811538 tetramer-sort yes amplicon-seq Naive T cells T1D T1D_1 chip0420_10189 PBMC +4093 CAVNEKGNKLVF TRAV8-1*01 TRAJ47*01 HLA-A*02:01 B2M MHCI LLPPLLEHL PTPRN HomoSapiens PMID:34811538 tetramer-sort yes amplicon-seq Naive T cells healthy healthy_1 chip0420_500624 PBMC +4094 CASSLFSRIEQYL TRBV7-9*01 TRBJ2-7*01 HLA-A*02:01 B2M MHCI LLAGIGTVPI PGT HomoSapiens PMID:34811538 tetramer-sort yes amplicon-seq Naive T cells healthy healthy_2 chip0420_205789 PBMC +4097 CGTAEPNDYKLSF TRAV30*01 TRAJ20*01 HLA-A*02:01 B2M MHCI GLCTLVAML BLMF1 EBV PMID:34811538 tetramer-sort yes amplicon-seq effector T cells T1D T1D_1 chip0420_687756 PBMC +4099 CASSQGAGWDEQFF TRBV2*01 TRBJ2-1*01 HLA-A*02:01 B2M MHCI AIIRILQQL VPR HIV-1 PMID:34811538 tetramer-sort yes amplicon-seq Naive T cells T1D T1D_1 chip0420_772230 PBMC +4100 CASSQDRGIARNNEQFF TRBV3-1*01 TRBJ2-1*01 HLA-A*02:01 B2M MHCI LLAGIGTVPI PGT HomoSapiens PMID:34811538 tetramer-sort yes amplicon-seq Naive T cells T1D T1D_1 chip0420_210150 PBMC +4103 CASSAGQGLPYEQYF TRBV5-1*01 TRBJ2-7*01 HLA-A*02:01 B2M MHCI GILGFVFTL M1 InfluenzaA PMID:34811538 tetramer-sort yes amplicon-seq transitional T cells between effector and memory populations healthy healthy_1 chip0420_586083 PBMC +4104 CAEGSQGNLIF TRAV5*01 TRAJ42*01 CSVGGSFYGYTF TRBV29-1*01 TRBJ1-2*01 HLA-A*02:01 B2M MHCI GLCTLVAML BLMF1 EBV PMID:34811538 tetramer-sort yes amplicon-seq effector memory T cells T1D T1D_2 chip0420_511417 PBMC +4105 CASSLEGQASSYEQYF TRBV5-1*01 TRBJ2-7*01 HLA-A*02:01 B2M MHCI CLGGLLTMV LMP2A EBV PMID:34811538 tetramer-sort yes amplicon-seq effector memory T cells T1D T1D_2 chip0420_851327 PBMC +4106 CAVKDTDKLIF TRAV8-1*01 TRAJ34*01 HLA-A*02:01 B2M MHCI YVLDHLIVV BRLF1 EBV PMID:34811538 tetramer-sort yes amplicon-seq effector T cells T1D T1D_1 chip0420_699687 PBMC +4107 CVVNGRDSSYKLIF TRAV12-1*01 TRAJ12*01 CASSDGRVHPGTQYF TRBV2*01 TRBJ2-5*01 HLA-A*02:01 B2M MHCI GLCTLVAML BLMF1 EBV PMID:34811538 tetramer-sort yes amplicon-seq effector T cells T1D T1D_1 chip0420_666356 PBMC +4110 CGPEEPNDYKLSF TRAV30*01 TRAJ20*01 CASSTGQLSNTGELFF TRBV9*01 TRBJ2-2*01 HLA-A*02:01 B2M MHCI GLCTLVAML BLMF1 EBV PMID:34811538 tetramer-sort yes amplicon-seq effector T cells T1D T1D_1 chip0420_125932 PBMC +4112 CASSSGAYGYTF TRBV19*01 TRBJ1-2*01 HLA-A*02:01 B2M MHCI GILGFVFTL M1 InfluenzaA PMID:34811538 tetramer-sort yes amplicon-seq transitional T cells between effector and memory populations T1D T1D_1 chip0420_646460 PBMC +4114 CAPGSSGAGSYQLTF TRAV17*01 TRAJ28*01 CAWEWVLGNEQFF TRBV30*01 TRBJ2-1*01 HLA-A*02:01 B2M MHCI LLAGIGTVPI PGT HomoSapiens PMID:34811538 tetramer-sort yes amplicon-seq Naive T cells T1D T1D_1 chip0420_257046 PBMC +4115 CSARALAGALGEQYF TRBV20-1*01 TRBJ2-7*01 HLA-A*02:01 B2M MHCI LLAGIGTVPI PGT HomoSapiens PMID:34811538 tetramer-sort yes amplicon-seq Naive T cells T1D T1D_1 chip0420_200083 PBMC +4116 CAGNYGGSQGNLLF TRAV25*01 TRAJ42*01 HLA-A*02:01 B2M MHCI GILGFVFTL M1 InfluenzaA PMID:34811538 tetramer-sort yes amplicon-seq transitional T cells between effector and memory populations T1D T1D_1 chip0420_829634 PBMC +4121 CASSLGLLGNEQFF TRBV7-2*01 TRBJ2-1*01 HLA-A*02:01 B2M MHCI ALAGIGILTV MART1 HomoSapiens PMID:34811538 tetramer-sort yes amplicon-seq transitional T cells between effector and memory populations healthy healthy_2 chip0420_336606 PBMC +4124 CSVEGGTNTGELFF TRBV29-1*01 TRBJ2-2*01 HLA-A*02:01 B2M MHCI VAANIVLTV ZNT8 HomoSapiens PMID:34811538 tetramer-sort yes amplicon-seq Naive T cells healthy healthy_1 chip0420_349761 PBMC +4125 CSVGSRGTNEKLFF TRBV29-1*01 TRBJ1-4*01 HLA-A*02:01 B2M MHCI GLCTLVAML BLMF1 EBV PMID:34811538 tetramer-sort yes amplicon-seq effector memory T cells T1D T1D_2 chip0420_43912 PBMC +4126 CAGPRRc?cGNQFYF TRAV27*01 TRAJ49*01 CSVCILAQNYNEQLF TRBV29-1*01 TRBJ2-1*01 HLA-A*02:01 B2M MHCI GILGFVFTL M1 InfluenzaA PMID:34811538 tetramer-sort yes amplicon-seq transitional T cells between effector and memory populations T1D T1D_1 chip0420_870915 PBMC +4128 CASSRSPGGTQFF TRBV14*01 TRBJ2-3*01 HLA-A*02:01 B2M MHCI GLCTLVAML BLMF1 EBV PMID:34811538 tetramer-sort yes amplicon-seq effector T cells T1D T1D_1 chip0420_867824 PBMC +4129 CASSYSGGNEQFF TRBV6-5*01 TRBJ2-1*01 HLA-A*02:01 B2M MHCI LLAGIGTVPI PGT HomoSapiens PMID:34811538 tetramer-sort yes amplicon-seq Naive T cells T1D T1D_1 chip0420_822438 PBMC +4130 CASSDGRVHPGTQYF TRBV2*01 TRBJ2-5*01 HLA-A*02:01 B2M MHCI GLCTLVAML BLMF1 EBV PMID:34811538 tetramer-sort yes amplicon-seq effector T cells T1D T1D_1 chip0420_286860 PBMC +4131 CILRRYGGSQGNLIF TRAV26-2*01 TRAJ42*01 HLA-A*02:01 B2M MHCI GLCTLVAML BLMF1 EBV PMID:34811538 tetramer-sort yes amplicon-seq effector memory T cells T1D T1D_1 chip0420_53472 PBMC +4132 CASSLYRGNTEAFF TRAV24*01 TRAJ40*01 CASSLYRGNTEAFF TRBV28*01 TRBJ1-1*01 HLA-A*02:01 B2M MHCI GILGFVFTL M1 InfluenzaA PMID:34811538 tetramer-sort yes amplicon-seq transitional T cells between effector and memory populations T1D T1D_1 chip0420_37778 PBMC +4135 CSVGSRGTNEKLFF TRBV29-1*01 TRBJ1-4*01 HLA-A*02:01 B2M MHCI GLCTLVAML BLMF1 EBV PMID:34811538 tetramer-sort yes amplicon-seq effector memory T cells T1D T1D_1 chip0420_55164 PBMC +4136 CSVGSRGTNEKLFF TRBV29-1*01 TRBJ1-4*01 HLA-A*02:01 B2M MHCI GLCTLVAML BLMF1 EBV PMID:34811538 tetramer-sort yes amplicon-seq effector T cells T1D T1D_1 chip0420_574083 PBMC +4138 CASSPINEQFF TRBV6-1*01 TRBJ2-1*01 HLA-A*02:01 B2M MHCI YVLDHLIVV BRLF1 EBV PMID:34811538 tetramer-sort yes amplicon-seq effector memory T cells T1D T1D_1 chip0420_81560 PBMC +4139 CASSTGQLSNTGELFF TRBV9*01 TRBJ2-2*01 HLA-A*02:01 B2M MHCI GLCTLVAML BLMF1 EBV PMID:34811538 tetramer-sort yes amplicon-seq effector memory T cells T1D T1D_1 chip0420_469280 PBMC +4143 CASSQVITINEQFF TRBV3-1*01 TRBJ2-1*01 HLA-A*02:01 B2M MHCI YVLDHLIVV BRLF1 EBV PMID:34811538 tetramer-sort yes amplicon-seq transitional T cells between effector and memory populations T1D T1D_1 chip0420_307508 PBMC +4145 CASSQSPGGTQYF TRBV14*01 TRBJ2-3*01 HLA-A*02:01 B2M MHCI GLCTLVAML BLMF1 EBV PMID:34811538 tetramer-sort yes amplicon-seq effector memory T cells tet_neg chip0420_619563 PBMC +4146 CALKDTDKLIF TRAV16*01 TRAJ34*01 HLA-A*02:01 B2M MHCI YVLDHLIVV BRLF1 EBV PMID:34811538 tetramer-sort yes amplicon-seq effector memory T cells T1D T1D_1 chip0420_274901 PBMC +4147 CAESTSGGKLIF TRAV5*01 TRAJ23*01 CSVGSRGTNEKLFF TRBV29-1*01 TRBJ1-4*01 HLA-A*02:01 B2M MHCI GLCTLVAML BLMF1 EBV PMID:34811538 tetramer-sort yes amplicon-seq effector memory T cells T1D T1D_1 chip0420_243406 PBMC +4149 CASSPGDARGEQYF TRBV5-6*01 TRBJ2-7*01 HLA-A*02:01 B2M MHCI YLLEMLWRL LMP1 EBV PMID:34811538 tetramer-sort yes amplicon-seq effector memory T cells T1D T1D_1 chip0420_725344 PBMC +4150 CAVWTGGGADGLTF TRAV21*01 TRAJ45*01 LCP*FCGcg??ggPSDTQHF TRBV19*01 TRBJ2-3*01 HLA-A*02:01 B2M MHCI GILGFVFTL M1 InfluenzaA PMID:34811538 tetramer-sort yes amplicon-seq transitional T cells between effector and memory populations T1D T1D_1 chip0420_704848 PBMC +4151 CASSQSRGSLWDTQYF TRBV4-3*01 TRBJ2-3*01 HLA-A*02:01 B2M MHCI YVLDHLIVV BRLF1 EBV PMID:34811538 tetramer-sort yes amplicon-seq effector T cells T1D T1D_2 chip0420_602096 PBMC +4152 CASSAGQGLPYEQYF TRBV5-1*01 TRBJ2-7*01 HLA-A*02:01 B2M MHCI GILGFVFTL M1 InfluenzaA PMID:34811538 tetramer-sort yes amplicon-seq transitional T cells between effector and memory populations healthy healthy_1 chip0420_773416 PBMC +4154 CAYGDGGSQGNLIF TRAV24*01 TRAJ42*01 HLA-A*02:01 B2M MHCI GILGFVFTL M1 InfluenzaA PMID:34811538 tetramer-sort yes amplicon-seq transitional T cells between effector and memory populations healthy healthy_1 chip0420_195675 PBMC +4155 CAGVPDSNYQLIW TRAV27*01 TRAJ33*01 CASSAGGGGGQETQYF TRBV9*01 TRBJ2-5*01 HLA-A*02:01 B2M MHCI IQATVMIIV ZNT8 HomoSapiens PMID:34811538 tetramer-sort yes amplicon-seq Naive T cells T1D T1D_1 chip0420_763688 PBMC +4157 CASSQVHRGRSGAFF TRBV4-2*01 TRBJ1-1*01 HLA-B*08:01 B2M MHCI FLKEKGGL Nef HIV-1 PMID:34811538 tetramer-sort yes amplicon-seq Naive T cells healthy healthy_2 chip0420_648912 PBMC +4158 CADL*CW??cTYPTLIW TRAV36/DV7*01 TRAJ38*01 CASSTGQLSNTGELFF TRBV9*01 TRBJ2-2*01 HLA-A*02:01 B2M MHCI GLCTLVAML BLMF1 EBV PMID:34811538 tetramer-sort yes amplicon-seq effector memory T cells T1D T1D_1 chip0420_426310 PBMC +4159 CALSGPNSGNTPLVF TRAV16*01 TRAJ29*01 HLA-A*02:01 B2M MHCI GILGFVFTL M1 InfluenzaA PMID:34811538 tetramer-sort yes amplicon-seq transitional T cells between effector and memory populations healthy healthy_1 chip0420_105668 PBMC +4160 CASSPVSGSTYEQYF TRBV3-1*01 TRBJ2-7*01 HLA-A*02:01 B2M MHCI GLCTLVAML BLMF1 EBV PMID:34811538 tetramer-sort yes amplicon-seq effector T cells T1D T1D_1 chip0420_93600 PBMC +4163 CAVKDTDKLIF TRAV8-1*01 TRAJ34*01 CAISEGTLSSYNEQFL TRBV10-3*01 TRBJ2-1*01 HLA-A*02:01 B2M MHCI YVLDHLIVV BRLF1 EBV PMID:34811538 tetramer-sort yes amplicon-seq effector memory T cells T1D T1D_1 chip0420_757751 PBMC +4165 CAAANAGGTRYGKLTF TRAV12-2*01 TRAJ52*01 CASSIVMGGQPQHF TRBV19*01 TRBJ1-5*01 HLA-A*02:01 B2M MHCI LLAGIGTVPI PGT HomoSapiens PMID:34811538 tetramer-sort yes amplicon-seq Naive T cells T1D T1D_2 chip0420_463809 PBMC +4166 CVFSGGADGLTF TRAV12-1*01 TRAJ45*01 HLA-A*02:01 B2M MHCI LLAGIGTVPI PGT HomoSapiens PMID:34811538 tetramer-sort yes amplicon-seq Naive T cells healthy healthy_1 chip0420_591293 PBMC +4168 CAVRDtt?GNDMRF TRAV8-4*01 TRAJ43*01 CSVGSRGTNEKLFF TRBV29-1*01 TRBJ1-4*01 HLA-A*02:01 B2M MHCI GLCTLVAML BLMF1 EBV PMID:34811538 tetramer-sort yes amplicon-seq effector T cells T1D T1D_1 chip0420_386064 PBMC +4170 CAGAAGSSNTGKLIF TRAV27*01 TRAJ37*01 HLA-A*02:01 B2M MHCI GILGFVFTL M1 InfluenzaA PMID:34811538 tetramer-sort yes amplicon-seq transitional T cells between effector and memory populations healthy healthy_1 chip0420_818381 PBMC +4171 CATQQGRDSQPQHF TRBV28*01 TRBJ1-5*01 HLA-A*02:01 B2M MHCI GLCTLVAML BLMF1 EBV PMID:34811538 tetramer-sort yes amplicon-seq effector T cells T1D T1D_1 chip0420_687452 PBMC +4174 CASSVRAGETQYF TRBV19*01 TRBJ2-5*01 HLA-A*02:01 B2M MHCI GILGFVFTL M1 InfluenzaA PMID:34811538 tetramer-sort yes amplicon-seq transitional T cells between effector and memory populations T1D T1D_1 chip0420_523587 PBMC +4175 CASSIRSSYEQYF TRBV19*01 TRBJ2-7*01 HLA-A*02:01 B2M MHCI GILGFVFTL M1 InfluenzaA PMID:34811538 tetramer-sort yes amplicon-seq effector T cells T1D T1D_1 chip0420_484960 PBMC +4176 CASSSGLVAPGELFF TRBV2*01 TRBJ2-2*01 HLA-A*02:01 B2M MHCI GLCTLVAML BLMF1 EBV PMID:34811538 tetramer-sort yes amplicon-seq effector memory T cells T1D T1D_2 chip0420_235460 PBMC +4178 CLVGPIca??tcFNTFYF TRAV4*01 TRAJ21*01 CASSIRSSYEQYF TRBV19*01 TRBJ2-7*01 HLA-A*02:01 B2M MHCI GILGFVFTL M1 InfluenzaA PMID:34811538 tetramer-sort yes amplicon-seq transitional T cells between effector and memory populations healthy healthy_1 chip0420_621007 PBMC +4179 CAVGGPSc?tNPARLMF TRAV8-6*01 TRAJ31*01 CARRALLGSNQPQHF TRBV19*01 TRBJ1-5*01 HLA-A*02:01 B2M MHCI YVLDHLIVV BRLF1 EBV PMID:34811538 tetramer-sort yes amplicon-seq transitional T cells between effector and memory populations T1D T1D_2 chip0420_252281 PBMC +4180 CVVLISNFGNEKLTF TRAV12-1*01 TRAJ48*01 CSVRDGGNYGYTF TRBV29-1*01 TRBJ1-2*01 HLA-A*02:01 B2M MHCI LLAGIGTVPI PGT HomoSapiens PMID:34811538 tetramer-sort yes amplicon-seq Naive T cells T1D T1D_1 chip0420_566314 PBMC +4181 CAWSPESSVSDEQFF TRBV30*01 TRBJ2-1*01 HLA-A*02:01 B2M MHCI RGPGRAFVTI GP160 HIV-1 PMID:34811538 tetramer-sort yes amplicon-seq Naive T cells T1D T1D_1 chip0420_325592 PBMC +4183 CASSNRDPGGRGDTQYF TRBV28*01 TRBJ2-3*01 HLA-A*02:01 B2M MHCI LLAGIGTVPI PGT HomoSapiens PMID:34811538 tetramer-sort yes amplicon-seq Naive T cells healthy healthy_1 chip0420_841758 PBMC +4186 CASSHLRTGVAEQYF TRBV12-3*01,TRBV12-4*01 TRBJ2-7*01 HLA-A*02:01 B2M MHCI LLAGIGTVPI PGT HomoSapiens PMID:34811538 tetramer-sort yes amplicon-seq natural killer-like T cells T1D T1D_1 chip0420_458556 PBMC +4188 CASSEAFLADNEQFF TRBV6-4*01 TRBJ2-1*01 HLA-A*02:01 B2M MHCI YVLDHLIVV BRLF1 EBV PMID:34811538 tetramer-sort yes amplicon-seq effector memory T cells T1D T1D_1 chip0420_123725 PBMC +4193 CAVVRNca??gtGSRLTF TRAV41*01 TRAJ10*01 HLA-A*02:01 B2M MHCI GILGFVFTL M1 InfluenzaA PMID:34811538 tetramer-sort yes amplicon-seq transitional T cells between effector and memory populations healthy healthy_1 chip0420_389691 PBMC +4195 CAIDSGERVEETQYF TRBV28*01 TRBJ2-5*01 HLA-A*02:01 B2M MHCI LLAGIGTVPI PGT HomoSapiens PMID:34811538 tetramer-sort yes amplicon-seq Naive T cells healthy healthy_1 chip0420_801777 PBMC +4196 CSARDGTGNGYTF TRBV20-1*01 TRBJ1-2*01 HLA-A*02:01 B2M MHCI GLCTLVAML BLMF1 EBV PMID:34811538 tetramer-sort yes amplicon-seq effector memory T cells T1D T1D_1 chip0420_754520 PBMC +4197 CAAYAGNLLPF TRAV29/DV5*01 TRAJ39*01 HLA-A*02:01 B2M MHCI GLCTLVAML BLMF1 EBV PMID:34811538 tetramer-sort yes amplicon-seq transitional T cells between effector and memory populations T1D T1D_2 chip0420_659574 PBMC +4198 CAAYAGNMLTF TRAV29/DV5*01 TRAJ39*01 CASRAGAGDTQYF TRBV10-2*01 TRBJ2-3*01 HLA-A*02:01 B2M MHCI GLCTLVAML BLMF1 EBV PMID:34811538 tetramer-sort yes amplicon-seq effector memory T cells T1D T1D_2 chip0420_293860 PBMC +4199 CAYKGGGATNKLIF TRAV38-1*01 TRAJ32*01 HLA-A*02:01 B2M MHCI GILGFVFTL M1 InfluenzaA PMID:34811538 tetramer-sort yes amplicon-seq transitional T cells between effector and memory populations healthy healthy_1 chip0420_432528 PBMC +4200 CASSQERGRANYGYTF TRBV14*01 TRBJ1-2*01 HLA-A*02:01 B2M MHCI LLAGIGTVPI PGT HomoSapiens PMID:34811538 tetramer-sort yes amplicon-seq Naive T cells T1D T1D_1 chip0420_183610 PBMC +4202 CSVGTGGTNEKLFF TRBV29-1*01 TRBJ1-4*01 HLA-A*02:01 B2M MHCI GLCTLVAML BLMF1 EBV PMID:34811538 tetramer-sort yes amplicon-seq effector memory T cells T1D T1D_2 chip0420_104294 PBMC +4203 CARRVAGAYNEQFL TRBV6-2*01,TRBV6-3*01 TRBJ2-1*01 HLA-A*02:01 B2M MHCI YLVALGINAV POL HCV PMID:34811538 tetramer-sort yes amplicon-seq natural killer-like T cells T1D T1D_1 chip0420_333816 PBMC +4204 CVVSRQGGTGGFKTIF TRAV12-1*01 TRAJ9*01 CASSFLGPGLNEQYF TRBV28*01 TRBJ2-7*01 HLA-A*02:01 B2M MHCI CLGGLLTMV LMP2A EBV PMID:34811538 tetramer-sort yes amplicon-seq Naive T cells T1D T1D_1 chip0420_642989 PBMC +4206 CAVNDGDMRF TRAV12-2*01 TRAJ43*01 HLA-A*02:01 B2M MHCI SLYHVYEVNL PTPRN HomoSapiens PMID:34811538 tetramer-sort yes amplicon-seq Naive T cells T1D T1D_1 chip0420_135513 PBMC +4210 CARRPSPGGTQYF TRBV14*01 TRBJ2-3*01 HLA-A*02:01 B2M MHCI GLCTLVAML BLMF1 EBV PMID:34811538 tetramer-sort yes amplicon-seq effector memory T cells T1D T1D_1 chip0420_265046 PBMC +4211 CASSISGANQPQHF TRBV19*01 TRBJ1-5*01 HLA-A*02:01 B2M MHCI GILGFVFTL M1 InfluenzaA PMID:34811538 tetramer-sort yes amplicon-seq transitional T cells between effector and memory populations healthy healthy_1 chip0420_649721 PBMC +4212 CAISEGTLSSYNEQLF TRBV10-3*01 TRBJ2-1*01 HLA-A*02:01 B2M MHCI YVLDHLIVV BRLF1 EBV PMID:34811538 tetramer-sort yes amplicon-seq effector T cells T1D T1D_1 chip0420_225874 PBMC +4214 CASSTRSSYEQYF TRBV19*01 TRBJ2-7*01 HLA-A*02:01 B2M MHCI GILGFVFTL M1 InfluenzaA PMID:34811538 tetramer-sort yes amplicon-seq transitional T cells between effector and memory populations healthy healthy_1 chip0420_739727 PBMC +4216 CASSTGQLSNTGEPFF TRBV9*01 TRBJ2-2*01 HLA-A*02:01 B2M MHCI GLCTLVAML BLMF1 EBV PMID:34811538 tetramer-sort yes amplicon-seq effector T cells T1D T1D_1 chip0420_315795 PBMC +4217 CASRALLGSNQPQHF TRBV19*01 TRBJ1-5*01 HLA-A*02:01 B2M MHCI YVLDHLIVV BRLF1 EBV PMID:34811538 tetramer-sort yes amplicon-seq effector memory T cells T1D T1D_2 chip0420_525842 PBMC +4218 SANKGGGAACPLVF TRAV38-1*01 TRAJ32*01 CSVGTGG??aLNEKLFF TRBV29-1*01 TRBJ1-4*01 HLA-A*02:01 B2M MHCI GILGFVFTL M1 InfluenzaA PMID:34811538 tetramer-sort yes amplicon-seq transitional T cells between effector and memory populations healthy healthy_1 chip0420_461755 PBMC +4219 CASSPVSGSTYEQYF TRBV3-1*01 TRBJ2-7*01 HLA-A*02:01 B2M MHCI GLCTLVAML BLMF1 EBV PMID:34811538 tetramer-sort yes amplicon-seq effector T cells T1D T1D_1 chip0420_257928 PBMC +4221 CAVSDTG??cRTYKYIF TRAV8-6*01 TRAJ40*01 HLA-A*02:01 B2M MHCI YVLDHLIVV BRLF1 EBV PMID:34811538 tetramer-sort yes amplicon-seq effector T cells T1D T1D_1 chip0420_828725 PBMC +4223 CASSSGGNVDTQYF TRBV7-3*01 TRBJ2-3*01 HLA-A*02:01 B2M MHCI GLCTLVAML BLMF1 EBV PMID:34811538 tetramer-sort yes amplicon-seq effector memory T cells T1D T1D_1 chip0420_520487 PBMC +4224 CASSMRSAYEQYF TRBV19*01 TRBJ2-7*01 HLA-A*02:01 B2M MHCI GILGFVFTL M1 InfluenzaA PMID:34811538 tetramer-sort yes amplicon-seq transitional T cells between effector and memory populations T1D T1D_1 chip0420_673423 PBMC +4225 CAMREGVVEYGNKLVF TRAV14/DV4*01 TRAJ47*01 CASSFGAGELFF TRBV19*01 TRBJ2-2*01 HLA-A*02:01 B2M MHCI GILGFVFTL M1 InfluenzaA PMID:34811538 tetramer-sort yes amplicon-seq transitional T cells between effector and memory populations T1D T1D_1 chip0420_754719 PBMC +4226 CILWRYGGGQGNLIF TRAV26-2*01 TRAJ42*01 HLA-A*02:01 B2M MHCI GLCTLVAML BLMF1 EBV PMID:34811538 tetramer-sort yes amplicon-seq effector T cells T1D T1D_1 chip0420_493558 PBMC +4229 CASSVGYTGELFF TRBV9*01 TRBJ2-2*01 HLA-A*02:01 B2M MHCI LLAGIGTVPI PGT HomoSapiens PMID:34811538 tetramer-sort yes amplicon-seq Naive T cells T1D T1D_1 chip0420_457851 PBMC +4230 CASSINGGRRDGYTF TRBV19*01 TRBJ1-2*01 HLA-A*02:01 B2M MHCI GILGFVFTL M1 InfluenzaA PMID:34811538 tetramer-sort yes amplicon-seq transitional T cells between effector and memory populations T1D T1D_1 chip0420_369910 PBMC +4231 CGPEEPNDYKLSF TRAV30*01 TRAJ20*01 CASSTGQLSNTGELFF TRBV9*01 TRBJ2-2*01 HLA-A*02:01 B2M MHCI GLCTLVAML BLMF1 EBV PMID:34811538 tetramer-sort yes amplicon-seq effector memory T cells T1D T1D_1 chip0420_232937 PBMC +4234 CASSRQGGKDGYTF TRBV6-1*01 TRBJ1-2*01 HLA-A*02:01 B2M MHCI FLYALALLL LMP2 EBV PMID:34811538 tetramer-sort yes amplicon-seq central memory T cells T1D T1D_2 chip0420_564220 PBMC +4236 CATSAVGVPTEAFF TRBV24-1*01 TRBJ1-1*01 HLA-A*02:01 B2M MHCI GILGFVFTL M1 InfluenzaA PMID:34811538 tetramer-sort yes amplicon-seq effector T cells T1D T1D_1 chip0420_400701 PBMC +4237 CASSINGGRRDGYTF TRBV19*01 TRBJ1-2*01 HLA-A*02:01 B2M MHCI GILGFVFTL M1 InfluenzaA PMID:34811538 tetramer-sort yes amplicon-seq transitional T cells between effector and memory populations T1D T1D_1 chip0420_107814 PBMC +4239 CARGDSWEKLQF TRAV12-2*01 TRAJ24*01 HLA-A*02:01 B2M MHCI LLQEYNWEL GAD65 HomoSapiens PMID:34811538 tetramer-sort yes amplicon-seq Naive T cells T1D T1D_1 chip0420_418411 PBMC +4240 CAGRPYD??aGGTAAVF TRBV19*01 TRBJ1-1*01 HLA-B*08:01 B2M MHCI QAKWRLQTL EBNA3A EBV PMID:34811538 tetramer-sort yes amplicon-seq effector memory T cells T1D T1D_3 chip0420_226342 PBMC +4241 CASSTGQLSNTGELFF TRBV9*01 TRBJ2-2*01 HLA-A*02:01 B2M MHCI GLCTLVAML BLMF1 EBV PMID:34811538 tetramer-sort yes amplicon-seq effector memory T cells T1D T1D_1 chip0420_867239 PBMC +4243 CAMSLSNFGNEKLTF TRAV12-3*01 TRAJ48*01 HLA-A*02:01 B2M MHCI LLAGIGTVPI PGT HomoSapiens PMID:34811538 tetramer-sort yes amplicon-seq Naive T cells T1D T1D_1 chip0420_187209 PBMC +4245 CAGNYGGSQGNLLF TRAV25*01 TRAJ42*01 CARRTRRPDAQYF TRBV19*01 TRBJ2-3*01 HLA-A*02:01 B2M MHCI GILGFVFTL M1 InfluenzaA PMID:34811538 tetramer-sort yes amplicon-seq transitional T cells between effector and memory populations T1D T1D_1 chip0420_251343 PBMC +4247 CAYVSGTSQIRL TRAV38-1*01 TRAJ40*01 CASSLLTSGANVLTF TRBV11-2*01 TRBJ2-6*01 HLA-A*02:01 B2M MHCI GLCTLVAML BLMF1 EBV PMID:34811538 tetramer-sort yes amplicon-seq effector memory T cells T1D T1D_1 chip0420_220868 PBMC +4248 CASSPDQTSSYNEQFF TRBV27*01 TRBJ2-1*01 HLA-A*02:01 B2M MHCI YVLDHLIVV BRLF1 EBV PMID:34811538 tetramer-sort yes amplicon-seq effector T cells T1D T1D_1 chip0420_551467 PBMC +4252 CAPGSLGc?tGSYQLTF TRAV17*01 TRAJ28*01 HLA-A*02:01 B2M MHCI GILGFVFTL M1 InfluenzaA PMID:34811538 tetramer-sort yes amplicon-seq effector T cells healthy healthy_1 chip0420_656120 PBMC +4254 CASSQALAGRQQFF TRAV9-1*01 TRAJ50*01 CASSQALAGRQQFF TRBV3-1*01 TRBJ2-1*01 HLA-A*02:01 B2M MHCI LLAGIGTVPI PGT HomoSapiens PMID:34811538 tetramer-sort yes amplicon-seq Naive T cells T1D T1D_1 chip0420_705628 PBMC +4255 CASSAGTVAPGELFF TRBV2*01 TRBJ2-2*01 HLA-A*02:01 B2M MHCI GLCTLVAML BLMF1 EBV PMID:34811538 tetramer-sort yes amplicon-seq effector T cells T1D T1D_1 chip0420_82363 PBMC +4256 CAESTSGGKLIF TRAV5*01 TRAJ23*01 CSVGSRGTNEKLFF TRBV29-1*01 TRBJ1-4*01 HLA-A*02:01 B2M MHCI GLCTLVAML BLMF1 EBV PMID:34811538 tetramer-sort yes amplicon-seq effector memory T cells T1D T1D_1 chip0420_3799 PBMC +4258 CASSIRSSYEQYF TRBV19*01 TRBJ2-7*01 HLA-A*02:01 B2M MHCI GILGFVFTL M1 InfluenzaA PMID:34811538 tetramer-sort yes amplicon-seq transitional T cells between effector and memory populations healthy healthy_1 chip0420_689417 PBMC +4259 CALLGSSNTGKLIF TRAV19*01 TRAJ37*01 CASSLHLRQDEQPQHF TRBV28*01 TRBJ1-5*01 HLA-B*08:01 B2M MHCI QAKWRLQTL EBNA3A EBV PMID:34811538 tetramer-sort yes amplicon-seq effector memory T cells T1D T1D_3 chip0420_768991 PBMC +4260 CASSTGQPQHF TRBV19*01 TRBJ1-5*01 HLA-A*02:01 B2M MHCI GILGFVFTL M1 InfluenzaA PMID:34811538 tetramer-sort yes amplicon-seq transitional T cells between effector and memory populations T1D T1D_1 chip0420_30602 PBMC +4263 CADLECW??cNNRKLIW TRAV36/DV7*01 TRAJ38*01 CARSPGQLSNTGELFF TRBV9*01 TRBJ2-2*01 HLA-A*02:01 B2M MHCI GLCTLVAML BLMF1 EBV PMID:34811538 tetramer-sort yes amplicon-seq effector T cells T1D T1D_1 chip0420_775453 PBMC +4264 CATQQGRDSQPQHF TRBV28*01 TRBJ1-5*01 HLA-A*02:01 B2M MHCI GLCTLVAML BLMF1 EBV PMID:34811538 tetramer-sort yes amplicon-seq effector T cells T1D T1D_1 chip0420_771302 PBMC +4266 CAPQGDSGSTTITF TRAV17*01 TRAJ11*01 CASSPQGGGYGYTF TRBV6-1*01 TRBJ1-2*01 HLA-A*02:01 B2M MHCI FLYALALLL LMP2 EBV PMID:34811538 tetramer-sort yes amplicon-seq transitional T cells between effector and memory populations T1D T1D_1 chip0420_631895 PBMC +4268 CASSQSRGSLWDTQYF TRBV4-3*01 TRBJ2-3*01 HLA-A*02:01 B2M MHCI YVLDHLIVV BRLF1 EBV PMID:34811538 tetramer-sort yes amplicon-seq effector T cells T1D T1D_2 chip0420_142262 PBMC +4270 CASSTGQLSNTGELFF TRBV9*01 TRBJ2-2*01 HLA-A*02:01 B2M MHCI GLCTLVAML BLMF1 EBV PMID:34811538 tetramer-sort yes amplicon-seq effector T cells T1D T1D_1 chip0420_282267 PBMC +4271 CASSSRSTDTQYF TRBV19*01 TRBJ2-3*01 HLA-A*02:01 B2M MHCI GILGFVFTL M1 InfluenzaA PMID:34811538 tetramer-sort yes amplicon-seq transitional T cells between effector and memory populations T1D T1D_1 chip0420_668103 PBMC +4273 CSVGTGGTNEKLFF TRBV29-1*01 TRBJ1-4*01 HLA-A*02:01 B2M MHCI GLCTLVAML BLMF1 EBV PMID:34811538 tetramer-sort yes amplicon-seq effector memory T cells T1D T1D_2 chip0420_459409 PBMC +4276 CILRRYGGSQGNLIF TRAV26-2*01 TRAJ42*01 CASSPVSGSTYEQYF TRBV3-1*01 TRBJ2-7*01 HLA-A*02:01 B2M MHCI GLCTLVAML BLMF1 EBV PMID:34811538 tetramer-sort yes amplicon-seq effector T cells T1D T1D_1 chip0420_291429 PBMC +4278 CVSWYSSASKIIF TRAV12-1*01 TRAJ3*01 CASSDPNTEAFF TRBV28*01 TRBJ1-1*01 HLA-A*02:01 B2M MHCI YLLPGWKL VP3 RotavirusA PMID:34811538 tetramer-sort yes amplicon-seq Naive T cells healthy healthy_1 chip0420_599323 PBMC +4279 CASSLPGLNYGYTF TRBV19*01 TRBJ1-2*01 HLA-A*02:01 B2M MHCI YVLDHLIVV BRLF1 EBV PMID:34811538 tetramer-sort yes amplicon-seq effector memory T cells T1D T1D_2 chip0420_584506 PBMC +4281 CAWSDQLGAARELFF TRBV30*01 TRBJ2-2*01 HLA-A*02:01 B2M MHCI YVLDHLIVV BRLF1 EBV PMID:34811538 tetramer-sort yes amplicon-seq effector memory T cells T1D T1D_2 chip0420_834282 PBMC +4282 CASSADWGDTQYF TRBV7-9*01 TRBJ2-3*01 HLA-A*02:01 B2M MHCI SLAAGVKLL PTPRN HomoSapiens PMID:34811538 tetramer-sort yes amplicon-seq Naive T cells T1D T1D_1 chip0420_596210 PBMC +4285 CASNIRSSYEQYF TRBV19*01 TRBJ2-7*01 HLA-A*02:01 B2M MHCI GILGFVFTL M1 InfluenzaA PMID:34811538 tetramer-sort yes amplicon-seq transitional T cells between effector and memory populations healthy healthy_1 chip0420_532802 PBMC +4286 CASSDGRVHPGTQYF TRBV2*01 TRBJ2-5*01 HLA-A*02:01 B2M MHCI GLCTLVAML BLMF1 EBV PMID:34811538 tetramer-sort yes amplicon-seq effector memory T cells T1D T1D_1 chip0420_380658 PBMC +4289 CALLRR??aSYIPTF TRAV19*01 TRAJ6*01 HLA-A*02:01 B2M MHCI GILGFVFTL M1 InfluenzaA PMID:34811538 tetramer-sort yes amplicon-seq transitional T cells between effector and memory populations healthy healthy_1 chip0420_642169 PBMC +4290 CSVGSRGTNEKLFF TRBV29-1*01 TRBJ1-4*01 HLA-A*02:01 B2M MHCI GLCTLVAML BLMF1 EBV PMID:34811538 tetramer-sort yes amplicon-seq effector T cells T1D T1D_1 chip0420_515120 PBMC +4292 CAMREDNAGNMLTF TRAV14/DV4*01 TRAJ39*01 HLA-A*02:01 B2M MHCI GILGFVFTL M1 InfluenzaA PMID:34811538 tetramer-sort yes amplicon-seq transitional T cells between effector and memory populations T1D T1D_1 chip0420_103143 PBMC +4293 CATQQGRDSQPQHF TRBV28*01 TRBJ1-5*01 HLA-A*02:01 B2M MHCI GLCTLVAML BLMF1 EBV PMID:34811538 tetramer-sort yes amplicon-seq effector memory T cells T1D T1D_1 chip0420_533816 PBMC +4294 CSVGSRGTNEKLFF TRBV29-1*01 TRBJ1-4*01 HLA-A*02:01 B2M MHCI GLCTLVAML BLMF1 EBV PMID:34811538 tetramer-sort yes amplicon-seq effector memory T cells T1D T1D_1 chip0420_191244 PBMC +4295 CAETFSg?cPAPLIF TRAV13-2*01 TRAJ34*01 HLA-B*08:01 B2M MHCI FQQDKHYDL GAD2 HomoSapiens PMID:34811538 tetramer-sort yes amplicon-seq Naive T cells T1D T1D_3 chip0420_62698 PBMC +4297 CASSITASGGHEQFF TRBV19*01 TRBJ2-1*01 HLA-A*02:01 B2M MHCI GILGFVFTL M1 InfluenzaA PMID:34811538 tetramer-sort yes amplicon-seq transitional T cells between effector and memory populations T1D T1D_1 chip0420_337762 PBMC +4300 CASSTRSTGELFF TRBV19*01 TRBJ2-2*01 HLA-A*02:01 B2M MHCI GILGFVFTL M1 InfluenzaA PMID:34811538 tetramer-sort yes amplicon-seq transitional T cells between effector and memory populations healthy healthy_1 chip0420_827554 PBMC +4301 CASSYLAGGNANTGELFF TRBV6-2*01,TRBV6-3*01 TRBJ2-2*01 HLA-A*02:01 B2M MHCI RLLPLLALLAL INS HomoSapiens PMID:34811538 tetramer-sort yes amplicon-seq central memory T cells T1D T1D_2 chip0420_265478 PBMC +4305 CASSTRSSYEQYF TRBV19*01 TRBJ2-7*01 HLA-A*02:01 B2M MHCI GILGFVFTL M1 InfluenzaA PMID:34811538 tetramer-sort yes amplicon-seq transitional T cells between effector and memory populations healthy healthy_1 chip0420_666089 PBMC +4308 CASSSGLVAPGELFF TRBV2*01 TRBJ2-2*01 HLA-A*02:01 B2M MHCI GLCTLVAML BLMF1 EBV PMID:34811538 tetramer-sort yes amplicon-seq effector T cells T1D T1D_2 chip0420_441312 PBMC +4309 CSVGSRGTNEKLFF TRBV29-1*01 TRBJ1-4*01 HLA-A*02:01 B2M MHCI GLCTLVAML BLMF1 EBV PMID:34811538 tetramer-sort yes amplicon-seq effector memory T cells T1D T1D_1 chip0420_219800 PBMC +4310 CASSSGLVAPGELFF TRBV2*01 TRBJ2-2*01 HLA-A*02:01 B2M MHCI GLCTLVAML BLMF1 EBV PMID:34811538 tetramer-sort yes amplicon-seq effector T cells T1D T1D_2 chip0420_41544 PBMC +4311 CVVNGEDSSYKLIF TRAV12-1*01 TRAJ12*01 CASSEGRVSPGEAFF TRBV2*01 TRBJ1-1*01 HLA-A*02:01 B2M MHCI GLCTLVAML BLMF1 EBV PMID:34811538 tetramer-sort yes amplicon-seq effector memory T cells T1D T1D_1 chip0420_633954 PBMC +4312 CAFMPNAGGTSYGKLTF TRAV38-1*01 TRAJ52*01 HLA-A*02:01 B2M MHCI GILGFVFTL M1 InfluenzaA PMID:34811538 tetramer-sort yes amplicon-seq transitional T cells between effector and memory populations T1D T1D_1 chip0420_720134 PBMC +4313 CSVGTGGTNEKLFF TRBV29-1*01 TRBJ1-4*01 HLA-A*02:01 B2M MHCI GLCTLVAML BLMF1 EBV PMID:34811538 tetramer-sort yes amplicon-seq effector memory T cells T1D T1D_2 chip0420_692705 PBMC +4314 CSVGTGGTNEKLFF TRBV29-1*01 TRBJ1-4*01 HLA-A*02:01 B2M MHCI GLCTLVAML BLMF1 EBV PMID:34811538 tetramer-sort yes amplicon-seq effector T cells T1D T1D_2 chip0420_186486 PBMC +4315 CASSQSPGGTQYF TRBV14*01 TRBJ2-3*01 HLA-A*02:01 B2M MHCI GLCTLVAML BLMF1 EBV PMID:34811538 tetramer-sort yes amplicon-seq effector memory T cells T1D T1D_1 chip0420_84894 PBMC +4319 CASSSGQVLPNEQFF TRBV2*01 TRBJ2-1*01 HLA-A*02:01 B2M MHCI GLCTLVAML BLMF1 EBV PMID:34811538 tetramer-sort yes amplicon-seq effector T cells T1D T1D_1 chip0420_821814 PBMC +4320 CASSFGTGDGYTF TRBV12-3*01,TRBV12-4*01 TRBJ1-2*01 HLA-A*02:01 B2M MHCI LVGPTPVNI POL HIV-1 PMID:34811538 tetramer-sort yes amplicon-seq Naive T cells T1D T1D_1 chip0420_700132 PBMC +4322 CAVRDRSF TRAV3*01 TRAJ34*01 CASSFELAGGEQYF TRBV27*01 TRBJ2-7*01 HLA-A*02:01 B2M MHCI LLAGIGTVPI PGT HomoSapiens PMID:34811538 tetramer-sort yes amplicon-seq Naive T cells healthy healthy_1 chip0420_634915 PBMC +4323 CAMGDYKLSF TRAV12-3*01 TRAJ20*01 HLA-A*02:01 B2M MHCI ALAGIGILTV MART1 HomoSapiens PMID:34811538 tetramer-sort yes amplicon-seq Naive T cells T1D T1D_1 chip0420_350332 PBMC +4325 CASSSRSSGTQYF TRBV19*01 TRBJ2-3*01 HLA-A*02:01 B2M MHCI GILGFVFTL M1 InfluenzaA PMID:34811538 tetramer-sort yes amplicon-seq transitional T cells between effector and memory populations healthy healthy_2 chip0420_50437 PBMC +4329 CASSPHLGAAAEQYF TRBV19*01 TRBJ2-7*01 HLA-A*02:01 B2M MHCI YVLDHLIVV BRLF1 EBV PMID:34811538 tetramer-sort yes amplicon-seq effector memory T cells T1D T1D_1 chip0420_302931 PBMC +4331 CASSQEDRAQDKADYGYTF TRBV3-1*01 TRBJ1-2*01 HLA-A*02:01 B2M MHCI GILGFVFTL M1 InfluenzaA PMID:34811538 tetramer-sort yes amplicon-seq effector T cells T1D T1D_1 chip0420_854535 PBMC +4332 CASSSGGNVDTQYF TRBV7-3*01 TRBJ2-3*01 HLA-A*02:01 B2M MHCI GLCTLVAML BLMF1 EBV PMID:34811538 tetramer-sort yes amplicon-seq effector memory T cells T1D T1D_1 chip0420_323758 PBMC +4333 CASSAGQGLPYEQYF TRBV5-1*01 TRBJ2-7*01 HLA-A*02:01 B2M MHCI GILGFVFTL M1 InfluenzaA PMID:34811538 tetramer-sort yes amplicon-seq transitional T cells between effector and memory populations healthy healthy_1 chip0420_600331 PBMC +4334 CSVGTGGTNEKLFF TRBV29-1*01 TRBJ1-4*01 HLA-A*02:01 B2M MHCI GLCTLVAML BLMF1 EBV PMID:34811538 tetramer-sort yes amplicon-seq effector T cells T1D T1D_2 chip0420_413476 PBMC +4335 CASSIIDRTRGTDTQYF TRBV19*01 TRBJ2-3*01 HLA-A*02:01 B2M MHCI GILGFVFTL M1 InfluenzaA PMID:34811538 tetramer-sort yes amplicon-seq transitional T cells between effector and memory populations T1D T1D_1 chip0420_240378 PBMC +4337 CASSGRSTGELFF TRBV19*01 TRBJ2-2*01 HLA-A*02:01 B2M MHCI GILGFVFTL M1 InfluenzaA PMID:34811538 tetramer-sort yes amplicon-seq transitional T cells between effector and memory populations healthy healthy_2 chip0420_2730 PBMC +4342 CSARDRTGNGYTF TRBV20-1*01 TRBJ1-2*01 HLA-A*02:01 B2M MHCI GLCTLVAML BLMF1 EBV PMID:34811538 tetramer-sort yes amplicon-seq effector T cells T1D T1D_2 chip0420_599524 PBMC +4343 CASSGGQGGFF TRBV2*01 TRBJ2-1*01 HLA-A*02:01 B2M MHCI LLAGIGTVPI PGT HomoSapiens PMID:34811538 tetramer-sort yes amplicon-seq Naive T cells T1D T1D_2 chip0420_305529 PBMC +4344 CASSPSGVSQPQHF TRBV28*01 TRBJ1-5*01 HLA-A*02:01 B2M MHCI ILMHCQTTL GAD65 HomoSapiens PMID:34811538 tetramer-sort yes amplicon-seq Naive T cells T1D T1D_1 chip0420_691782 PBMC +4345 CAGSEMEYGNKLVF TRAV27*01 TRAJ47*01 HLA-A*02:01 B2M MHCI GILGFVFTL M1 InfluenzaA PMID:34811538 tetramer-sort yes amplicon-seq transitional T cells between effector and memory populations T1D T1D_1 chip0420_516850 PBMC +4347 CASSAGQDRAQETQYF TRBV2*01 TRBJ2-5*01 HLA-B*08:01 B2M MHCI QAKWRLQTL EBNA3A EBV PMID:34811538 tetramer-sort yes amplicon-seq effector memory T cells T1D T1D_3 chip0420_706881 PBMC +4349 CASSPGQLSNTGELFF TRBV9*01 TRBJ2-2*01 HLA-A*02:01 B2M MHCI GLCTLVAML BLMF1 EBV PMID:34811538 tetramer-sort yes amplicon-seq effector T cells T1D T1D_1 chip0420_657930 PBMC +4350 CASSSGGNVDTQYF TRBV7-3*01 TRBJ2-3*01 HLA-A*02:01 B2M MHCI GLCTLVAML BLMF1 EBV PMID:34811538 tetramer-sort yes amplicon-seq effector memory T cells T1D T1D_1 chip0420_357259 PBMC +4354 CSVGTGGTNEKLFF TRBV29-1*01 TRBJ1-4*01 HLA-A*02:01 B2M MHCI GLCTLVAML BLMF1 EBV PMID:34811538 tetramer-sort yes amplicon-seq transitional T cells between effector and memory populations T1D T1D_2 chip0420_605282 PBMC +4355 CAVRTcc?GNQFFF TRAV41*01 TRAJ49*01 CALRWGSGYTF TRBV10-3*01 TRBJ1-2*01 HLA-B*08:01 B2M MHCI LRLRLDQL GFAP HomoSapiens PMID:34811538 tetramer-sort yes amplicon-seq Naive T cells T1D T1D_3 chip0420_423546 PBMC +4357 CSARAGTGSGYTF TRBV20-1*01 TRBJ1-2*01 HLA-A*02:01 B2M MHCI GLCTLVAML BLMF1 EBV PMID:34811538 tetramer-sort yes amplicon-seq effector memory T cells T1D T1D_1 chip0420_666210 PBMC +4358 CASSINGGRRDGYTF TRBV19*01 TRBJ1-2*01 HLA-A*02:01 B2M MHCI GILGFVFTL M1 InfluenzaA PMID:34811538 tetramer-sort yes amplicon-seq transitional T cells between effector and memory populations tet_neg chip0420_141671 PBMC +4360 CSVGSRGTNEKLFF TRBV29-1*01 TRBJ1-4*01 HLA-A*02:01 B2M MHCI GLCTLVAML BLMF1 EBV PMID:34811538 tetramer-sort yes amplicon-seq effector T cells T1D T1D_1 chip0420_339868 PBMC +4361 CVVAISNFGNEKLTF TRAV12-1*01 TRAJ48*01 CASSVRASNQPQHF TRBV9*01 TRBJ1-5*01 HLA-A*02:01 B2M MHCI LLAGIGTVPI PGT HomoSapiens PMID:34811538 tetramer-sort yes amplicon-seq Naive T cells healthy healthy_1 chip0420_12492 PBMC +4363 CASSSRTEEGQPQHF TRBV28*01 TRBJ1-5*01 HLA-A*02:01 B2M MHCI LLAGIGTVPI PGT HomoSapiens PMID:34811538 tetramer-sort yes amplicon-seq Naive T cells healthy healthy_1 chip0420_483374 PBMC +4368 CAVDPWGNQFYF TRAV39*01 TRAJ49*01 CATQQGRDSQPQHF TRBV28*01 TRBJ1-5*01 HLA-A*02:01 B2M MHCI GLCTLVAML BLMF1 EBV PMID:34811538 tetramer-sort yes amplicon-seq effector T cells T1D T1D_1 chip0420_571277 PBMC +4370 CGTENGFQGAQKLVF TRAV30*01 TRAJ54*01 HLA-A*02:01 B2M MHCI KMYAFTLES ZNT8 HomoSapiens PMID:34811538 tetramer-sort yes amplicon-seq Naive T cells healthy healthy_1 chip0420_705358 PBMC +4371 CASSYMSGEAFF TRBV6-2*01,TRBV6-3*01 TRBJ1-1*01 HLA-A*02:01 B2M MHCI YVLDHLIVV BRLF1 EBV PMID:34811538 tetramer-sort yes amplicon-seq effector memory T cells T1D T1D_2 chip0420_695578 PBMC +4373 CAVKDTDKLIF TRAV8-1*01 TRAJ34*01 HLA-A*02:01 B2M MHCI YVLDHLIVV BRLF1 EBV PMID:34811538 tetramer-sort yes amplicon-seq effector memory T cells T1D T1D_2 chip0420_874689 PBMC +4374 CASRAGAGDTQYF TRBV10-2*01 TRBJ2-3*01 HLA-A*02:01 B2M MHCI GLCTLVAML BLMF1 EBV PMID:34811538 tetramer-sort yes amplicon-seq effector T cells T1D T1D_2 chip0420_389109 PBMC +4376 CAMSPSNFGNEKLTF TRAV12-3*01 TRAJ48*01 HLA-A*02:01 B2M MHCI LLAGIGTVPI PGT HomoSapiens PMID:34811538 tetramer-sort yes amplicon-seq Naive T cells healthy healthy_1 chip0420_822286 PBMC +4378 CASSEPPYEQYF TRBV25-1*01 TRBJ2-7*01 HLA-A*02:01 B2M MHCI RGPGRAFVTI GP160 HIV-1 PMID:34811538 tetramer-sort yes amplicon-seq Naive T cells healthy healthy_1 chip0420_93251 PBMC +4379 CAAATGLYGYTF TRBV19*01 TRBJ1-2*01 HLA-A*02:01 B2M MHCI GILGFVFTL M1 InfluenzaA PMID:34811538 tetramer-sort yes amplicon-seq transitional T cells between effector and memory populations T1D T1D_1 chip0420_612795 PBMC +4380 YASSLHLRQDEQPQHF TRBV28*01 TRBJ1-5*01 HLA-B*08:01 B2M MHCI QAKWRLQTL EBNA3A EBV PMID:34811538 tetramer-sort yes amplicon-seq effector memory T cells T1D T1D_3 chip0420_294220 PBMC +4381 CAWSVLGDPYEQYF TRBV30*01 TRBJ2-7*01 HLA-A*02:01 B2M MHCI LLFNILGGWV NS4B HCV PMID:34811538 tetramer-sort yes amplicon-seq Naive T cells T1D T1D_1 chip0420_157083 PBMC +4382 CASSFGTGGGTDTQYF TRBV28*01 TRBJ2-3*01 HLA-A*02:01 B2M MHCI LLAGIGTVPI PGT HomoSapiens PMID:34811538 tetramer-sort yes amplicon-seq Naive T cells healthy healthy_1 chip0420_280872 PBMC +4383 CSVGSRGTNEKLFF TRBV29-1*01 TRBJ1-4*01 HLA-A*02:01 B2M MHCI GLCTLVAML BLMF1 EBV PMID:34811538 tetramer-sort yes amplicon-seq effector memory T cells T1D T1D_1 chip0420_267737 PBMC +4385 CASSTGQLSNTGELFF TRBV9*01 TRBJ2-2*01 HLA-A*02:01 B2M MHCI GLCTLVAML BLMF1 EBV PMID:34811538 tetramer-sort yes amplicon-seq effector T cells T1D T1D_1 chip0420_5716 PBMC +4387 CASNLAGNNEQFF TRBV9*01 TRBJ2-1*01 HLA-A*02:01 B2M MHCI GLCTLVAML BLMF1 EBV PMID:34811538 tetramer-sort yes amplicon-seq transitional T cells between effector and memory populations T1D T1D_2 chip0420_522169 PBMC +4389 CASRALLGGKETQYF TRBV6-1*01 TRBJ2-5*01 HLA-A*02:01 B2M MHCI YVLDHLIVV BRLF1 EBV PMID:34811538 tetramer-sort yes amplicon-seq effector T cells T1D T1D_1 chip0420_533590 PBMC +4390 CASSEAGPSYEQYF TRBV10-2*01 TRBJ2-7*01 HLA-A*02:01 B2M MHCI RGPGRAFVTI GP160 HIV-1 PMID:34811538 tetramer-sort yes amplicon-seq Naive T cells T1D T1D_1 chip0420_386245 PBMC +4391 CASSLHLRQDEQPQHF TRBV28*01 TRBJ1-5*01 HLA-B*08:01 B2M MHCI QAKWRLQTL EBNA3A EBV PMID:34811538 tetramer-sort yes amplicon-seq effector memory T cells T1D T1D_3 chip0420_574055 PBMC +4393 CANSSGGNVDTQYF TRBV7-3*01 TRBJ2-3*01 HLA-A*02:01 B2M MHCI GLCTLVAML BLMF1 EBV PMID:34811538 tetramer-sort yes amplicon-seq effector memory T cells T1D T1D_1 chip0420_24640 PBMC +4394 CASSHLLGTGFGYTF TRBV3-1*01 TRBJ1-2*01 HLA-A*02:01 B2M MHCI YVLDHLIVV BRLF1 EBV PMID:34811538 tetramer-sort yes amplicon-seq effector memory T cells T1D T1D_1 chip0420_216263 PBMC +4395 CSVGTGGTNEKLFF TRBV29-1*01 TRBJ1-4*01 HLA-A*02:01 B2M MHCI GLCTLVAML BLMF1 EBV PMID:34811538 tetramer-sort yes amplicon-seq effector memory T cells T1D T1D_2 chip0420_539861 PBMC +4396 CASSPSTSGSGETQYF TRBV3-1*01 TRBJ2-5*01 HLA-A*02:01 B2M MHCI YVLDHLIVV BRLF1 EBV PMID:34811538 tetramer-sort yes amplicon-seq effector memory T cells T1D T1D_2 chip0420_493297 PBMC +4397 CASSSGLVAPGELFF TRBV2*01 TRBJ2-2*01 HLA-A*02:01 B2M MHCI GLCTLVAML BLMF1 EBV PMID:34811538 tetramer-sort yes amplicon-seq effector memory T cells T1D T1D_2 chip0420_91054 PBMC +4398 CGPAEPNDYKLNF TRAV30*01 TRAJ20*01 CASSTGQLSNTGELFF TRBV9*01 TRBJ2-2*01 HLA-A*02:01 B2M MHCI GLCTLVAML BLMF1 EBV PMID:34811538 tetramer-sort yes amplicon-seq effector T cells T1D T1D_1 chip0420_756286 PBMC +4400 CAMREGGNFNKFYL TRAV14/DV4*01 TRAJ21*01 CSASRALDQPQHF TRBV20-1*01 TRBJ1-5*01 HLA-A*02:01 B2M MHCI YVLDHLIVV BRLF1 EBV PMID:34811538 tetramer-sort yes amplicon-seq effector memory T cells healthy healthy_1 chip0420_695675 PBMC +4401 CVVNGRDSSYKLIF TRAV12-1*01 TRAJ12*01 HLA-A*02:01 B2M MHCI GLCTLVAML BLMF1 EBV PMID:34811538 tetramer-sort yes amplicon-seq effector memory T cells T1D T1D_2 chip0420_260872 PBMC +4402 CASSSRSTDTQYF TRBV19*01 TRBJ2-3*01 HLA-A*02:01 B2M MHCI GILGFVFTL M1 InfluenzaA PMID:34811538 tetramer-sort yes amplicon-seq transitional T cells between effector and memory populations T1D T1D_1 chip0420_348450 PBMC +4406 CASSEGPLTDGYGYTF TRBV2*01 TRBJ1-2*01 HLA-A*02:01 B2M MHCI LLAGIGTVPI PGT HomoSapiens PMID:34811538 tetramer-sort yes amplicon-seq Naive T cells healthy healthy_1 chip0420_454654 PBMC +4409 CASSESYEQYF TRBV2*01 TRBJ2-7*01 HLA-A*02:01 B2M MHCI AIIRILQQL VPR HIV-1 PMID:34811538 tetramer-sort yes amplicon-seq transitional T cells between effector and memory populations T1D T1D_2 chip0420_851624 PBMC +4411 CASSMGAHGYTF TRBV19*01 TRBJ1-2*01 HLA-A*02:01 B2M MHCI GILGFVFTL M1 InfluenzaA PMID:34811538 tetramer-sort yes amplicon-seq transitional T cells between effector and memory populations T1D T1D_1 chip0420_445859 PBMC +4412 CSVGSRGTNEKLFF TRBV29-1*01 TRBJ1-4*01 HLA-A*02:01 B2M MHCI GLCTLVAML BLMF1 EBV PMID:34811538 tetramer-sort yes amplicon-seq effector memory T cells T1D T1D_1 chip0420_433282 PBMC +4414 CASSMRSTGELFF TRBV19*01 TRBJ2-2*01 HLA-A*02:01 B2M MHCI GILGFVFTL M1 InfluenzaA PMID:34811538 tetramer-sort yes amplicon-seq transitional T cells between effector and memory populations T1D T1D_2 chip0420_298519 PBMC +4415 CAGAGSQGNLIF TRAV27*01 TRAJ42*01 HLA-A*02:01 B2M MHCI GILGFVFTL M1 InfluenzaA PMID:34811538 tetramer-sort yes amplicon-seq transitional T cells between effector and memory populations healthy healthy_1 chip0420_54890 PBMC +4416 CAESTSGGKLIF TRAV5*01 TRAJ23*01 CSVGTGGTNEKLFF TRBV29-1*01 TRBJ1-4*01 HLA-A*02:01 B2M MHCI GLCTLVAML BLMF1 EBV PMID:34811538 tetramer-sort yes amplicon-seq effector memory T cells T1D T1D_2 chip0420_629640 PBMC +4417 CASSSGLVAPGELFF TRBV2*01 TRBJ2-2*01 HLA-A*02:01 B2M MHCI GLCTLVAML BLMF1 EBV PMID:34811538 tetramer-sort yes amplicon-seq effector memory T cells T1D T1D_2 chip0420_375542 PBMC +4418 CASSVRAGETQYF TRBV19*01 TRBJ2-5*01 HLA-A*02:01 B2M MHCI GILGFVFTL M1 InfluenzaA PMID:34811538 tetramer-sort yes amplicon-seq transitional T cells between effector and memory populations T1D T1D_1 chip0420_624518 PBMC +4420 CAVVRNca??gtGSRLTF TRAV41*01 TRAJ10*01 LCQ*YAgg??gcSYEQYF TRBV19*01 TRBJ2-7*01 HLA-A*02:01 B2M MHCI GILGFVFTL M1 InfluenzaA PMID:34811538 tetramer-sort yes amplicon-seq transitional T cells between effector and memory populations healthy healthy_1 chip0420_261791 PBMC +4421 CASSLHLRQDEQPQHF TRBV28*01 TRBJ1-5*01 HLA-B*08:01 B2M MHCI QAKWRLQTL EBNA3A EBV PMID:34811538 tetramer-sort yes amplicon-seq effector memory T cells T1D T1D_3 chip0420_361965 PBMC +4422 CAGVWGSSNTGKLIF TRAV27*01 TRAJ37*01 CASSIRAAYEQYF TRBV19*01 TRBJ2-7*01 HLA-A*02:01 B2M MHCI GILGFVFTL M1 InfluenzaA PMID:34811538 tetramer-sort yes amplicon-seq transitional T cells between effector and memory populations healthy healthy_1 chip0420_605885 PBMC +4424 CASSLSRGTYEQYF TRBV4-3*01 TRBJ2-7*01 HLA-A*02:01 B2M MHCI VIYQYMDDL POL HIV-1 PMID:34811538 tetramer-sort yes amplicon-seq Naive T cells healthy healthy_1 chip0420_630916 PBMC +4425 CSVGSRGTNEKLFF TRBV29-1*01 TRBJ1-4*01 HLA-A*02:01 B2M MHCI GLCTLVAML BLMF1 EBV PMID:34811538 tetramer-sort yes amplicon-seq effector memory T cells T1D T1D_1 chip0420_435330 PBMC +4426 CAMTISNFGNEKLTF TRAV12-3*01 TRAJ48*01 HLA-A*02:01 B2M MHCI LLAGIGTVPI PGT HomoSapiens PMID:34811538 tetramer-sort yes amplicon-seq Naive T cells healthy healthy_1 chip0420_195228 PBMC +4427 CASSHPADLDTQYF TRBV7-3*01 TRBJ2-3*01 HLA-A*02:01 B2M MHCI RGPGRAFVTI GP160 HIV-1 PMID:34811538 tetramer-sort yes amplicon-seq Naive T cells T1D T1D_1 chip0420_835725 PBMC +4431 CAFMVNAGGTSYGKLTF TRAV38-1*01 TRAJ52*01 HLA-A*02:01 B2M MHCI GILGFVFTL M1 InfluenzaA PMID:34811538 tetramer-sort yes amplicon-seq transitional T cells between effector and memory populations healthy healthy_1 chip0420_487634 PBMC +4432 CASSLQGGEKLFF TRBV7-9*01 TRBJ1-4*01 HLA-A*02:01 B2M MHCI LLAGIGTVPI PGT HomoSapiens PMID:34811538 tetramer-sort yes amplicon-seq Naive T cells T1D T1D_1 chip0420_430805 PBMC +4433 CSARDGTGNGYTF TRBV20-1*01 TRBJ1-2*01 HLA-A*02:01 B2M MHCI GLCTLVAML BLMF1 EBV PMID:34811538 tetramer-sort yes amplicon-seq effector memory T cells T1D T1D_1 chip0420_378800 PBMC +4435 CASSEDLSSYEQYF TRBV14*01 TRBJ2-7*01 HLA-A*02:01 B2M MHCI FLGKIWPSYK GAG HIV-1 PMID:34811538 tetramer-sort yes amplicon-seq Naive T cells healthy healthy_1 chip0420_428883 PBMC +4436 CSVTTDRNSNQPQHF TRBV29-1*01 TRBJ1-5*01 HLA-A*02:01 B2M MHCI GLCTLVAML BLMF1 EBV PMID:34811538 tetramer-sort yes amplicon-seq effector T cells T1D T1D_1 chip0420_52340 PBMC +4438 CAVTGDHKLSF TRAV12-2*01 TRAJ20*01 CSARVETGYNEQFL TRBV20-1*01 TRBJ2-1*01 HLA-A*02:01 B2M MHCI LLAGIGTVPI PGT HomoSapiens PMID:34811538 tetramer-sort yes amplicon-seq Naive T cells T1D T1D_1 chip0420_749966 PBMC +4445 CASSSGQVLPNEQFF TRBV2*01 TRBJ2-1*01 HLA-A*02:01 B2M MHCI GLCTLVAML BLMF1 EBV PMID:34811538 tetramer-sort yes amplicon-seq effector memory T cells T1D T1D_1 chip0420_36768 PBMC +4446 CAAFECS??cNIRQLIG TRAV36/DV7*01 TRAJ38*01 CASSTGQLSNTGELFF TRBV9*01 TRBJ2-2*01 HLA-A*02:01 B2M MHCI GLCTLVAML BLMF1 EBV PMID:34811538 tetramer-sort yes amplicon-seq effector memory T cells T1D T1D_1 chip0420_488366 PBMC +4447 CAVKDTDKLIF TRAV8-1*01 TRAJ34*01 HLA-A*02:01 B2M MHCI YVLDHLIVV BRLF1 EBV PMID:34811538 tetramer-sort yes amplicon-seq effector memory T cells T1D T1D_1 chip0420_478538 PBMC +4451 CAGAIGSSNTGKLIF TRAV27*01 TRAJ37*01 HLA-A*02:01 B2M MHCI GILGFVFTL M1 InfluenzaA PMID:34811538 tetramer-sort yes amplicon-seq effector T cells T1D T1D_1 chip0420_583886 PBMC +4453 CAVDPWGNQFYF TRAV39*01 TRAJ49*01 CASSFLGTGLNEQYF TRBV28*01 TRBJ2-7*01 HLA-A*02:01 B2M MHCI GLCTLVAML BLMF1 EBV PMID:34811538 tetramer-sort yes amplicon-seq effector memory T cells T1D T1D_1 chip0420_484796 PBMC +4454 CASSSRSSYEQYS TRBV19*01 TRBJ2-7*01 HLA-A*02:01 B2M MHCI GILGFVFTL M1 InfluenzaA PMID:34811538 tetramer-sort yes amplicon-seq transitional T cells between effector and memory populations T1D T1D_1 chip0420_435908 PBMC +4455 CAGAGCPGNLIF TRAV27*01 TRAJ42*01 HLA-A*02:01 B2M MHCI GILGFVFTL M1 InfluenzaA PMID:34811538 tetramer-sort yes amplicon-seq transitional T cells between effector and memory populations healthy healthy_1 chip0420_431475 PBMC +4456 CSVGSRGTNEKLFF TRBV29-1*01 TRBJ1-4*01 HLA-A*02:01 B2M MHCI GLCTLVAML BLMF1 EBV PMID:34811538 tetramer-sort yes amplicon-seq effector T cells T1D T1D_1 chip0420_659956 PBMC +4459 CSVGGSFYGYTF TRBV29-1*01 TRBJ1-2*01 HLA-A*02:01 B2M MHCI GLCTLVAML BLMF1 EBV PMID:34811538 tetramer-sort yes amplicon-seq effector T cells T1D T1D_2 chip0420_762527 PBMC +4460 CASSTHGGNEQYS TRBV19*01 TRBJ2-7*01 HLA-A*02:01 B2M MHCI GILGFVFTL M1 InfluenzaA PMID:34811538 tetramer-sort yes amplicon-seq transitional T cells between effector and memory populations healthy healthy_1 chip0420_676555 PBMC +4461 CVVADLRTSYDKVIF TRAV12-1*01 TRAJ50*01 HLA-A*01:01 B2M MHCI LTSLTILQLY G6PC2 HomoSapiens PMID:34811538 tetramer-sort yes amplicon-seq Naive T cells healthy healthy_2 chip0420_614012 PBMC +4464 CAMNYGGSQGNLIF TRAV25*01 TRAJ42*01 HLA-A*02:01 B2M MHCI GILGFVFTL M1 InfluenzaA PMID:34811538 tetramer-sort yes amplicon-seq transitional T cells between effector and memory populations T1D T1D_2 chip0420_71884 PBMC +4466 CASSPDQTSSYNEQFF TRBV27*01 TRBJ2-1*01 HLA-A*02:01 B2M MHCI YVLDHLIVV BRLF1 EBV PMID:34811538 tetramer-sort yes amplicon-seq effector T cells T1D T1D_1 chip0420_697386 PBMC +4468 CASSLIGGQGANGYTF TRBV7-3*01 TRBJ1-2*01 HLA-A*02:01 B2M MHCI GILGFVFTL M1 InfluenzaA PMID:34811538 tetramer-sort yes amplicon-seq transitional T cells between effector and memory populations healthy healthy_1 chip0420_193022 PBMC +4469 CAMSAac?DSKLSF TRAV12-3*01 TRAJ20*01 HLA-A*02:01 B2M MHCI KMYAFTLES ZNT8 HomoSapiens PMID:34811538 tetramer-sort yes amplicon-seq Naive T cells healthy healthy_1 chip0420_397627 PBMC +4470 CASSYEGSEAFF TRBV6-5*01,TRBV6-1*01 TRBJ1-1*01 HLA-A*02:01 B2M MHCI YVLDHLIVV BRLF1 EBV PMID:34811538 tetramer-sort yes amplicon-seq effector memory T cells T1D T1D_1 chip0420_95191 PBMC +4471 CSVGTGGTNEKLFF TRBV29-1*01 TRBJ1-4*01 HLA-A*02:01 B2M MHCI GLCTLVAML BLMF1 EBV PMID:34811538 tetramer-sort yes amplicon-seq effector memory T cells T1D T1D_2 chip0420_396835 PBMC +4472 CATQQGRDSQPQHF TRBV28*01 TRBJ1-5*01 HLA-A*02:01 B2M MHCI GLCTLVAML BLMF1 EBV PMID:34811538 tetramer-sort yes amplicon-seq effector T cells T1D T1D_1 chip0420_878943 PBMC +4473 CAVRLSLYSGAGSYQLTF TRAV3*01 TRAJ28*01 CASSLPLRQAEQPQHF TRBV28*01 TRBJ1-5*01 HLA-B*08:01 B2M MHCI QAKWRLQTL EBNA3A EBV PMID:34811538 tetramer-sort yes amplicon-seq effector memory T cells T1D T1D_3 chip0420_169069 PBMC +4474 CASSPSGLAGTSEQFF TRBV25-1*01 TRBJ2-1*01 HLA-A*02:01 B2M MHCI YVLDHLIVV BRLF1 EBV PMID:34811538 tetramer-sort yes amplicon-seq Naive T cells healthy healthy_1 chip0420_795816 PBMC +4478 CASEAGEGTGQETQYF TRBV12-3*01,TRBV12-4*01 TRBJ2-5*01 HLA-A*02:01 B2M MHCI LLAGIGTVPI PGT HomoSapiens PMID:34811538 tetramer-sort yes amplicon-seq Naive T cells healthy healthy_1 chip0420_24246 PBMC +4480 CGTEEPNDYKLSF TRAV30*01 TRAJ20*01 HLA-A*02:01 B2M MHCI GLCTLVAML BLMF1 EBV PMID:34811538 tetramer-sort yes amplicon-seq effector T cells T1D T1D_1 chip0420_200107 PBMC +4481 CAMREGGNFNKFYF TRAV14/DV4*01 TRAJ21*01 CSAPAPPGQPQHF TRBV20-1*01 TRBJ1-5*01 HLA-A*02:01 B2M MHCI YVLDHLIVV BRLF1 EBV PMID:34811538 tetramer-sort yes amplicon-seq effector memory T cells healthy healthy_1 chip0420_44962 PBMC +4483 CSVGSRGTNEKLFF TRBV29-1*01 TRBJ1-4*01 HLA-A*02:01 B2M MHCI GLCTLVAML BLMF1 EBV PMID:34811538 tetramer-sort yes amplicon-seq effector memory T cells T1D T1D_1 chip0420_210639 PBMC +4484 CADFSCW??cPHRNLIW TRAV36/DV7*01 TRAJ38*01 HLA-A*02:01 B2M MHCI GLCTLVAML BLMF1 EBV PMID:34811538 tetramer-sort yes amplicon-seq effector memory T cells T1D T1D_1 chip0420_875890 PBMC +4485 CSVGSRGTNEKLFF TRBV29-1*01 TRBJ1-4*01 HLA-A*02:01 B2M MHCI GLCTLVAML BLMF1 EBV PMID:34811538 tetramer-sort yes amplicon-seq effector T cells T1D T1D_1 chip0420_433439 PBMC +4491 CASSLHLRQDEQPQHF TRBV28*01 TRBJ1-5*01 HLA-B*08:01 B2M MHCI QAKWRLQTL EBNA3A EBV PMID:34811538 tetramer-sort yes amplicon-seq effector memory T cells T1D T1D_3 chip0420_308713 PBMC +4493 CASSTGQLSNTGELFF TRBV9*01 TRBJ2-2*01 HLA-A*02:01 B2M MHCI GLCTLVAML BLMF1 EBV PMID:34811538 tetramer-sort yes amplicon-seq effector T cells T1D T1D_1 chip0420_172023 PBMC +4495 CGTQENDSWGKLQF TRAV30*01 TRAJ24*01 HLA-A*02:01 B2M MHCI GILGFVFTL M1 InfluenzaA PMID:34811538 tetramer-sort yes amplicon-seq transitional T cells between effector and memory populations T1D T1D_1 chip0420_521678 PBMC +4496 CASSTRSSYEQYF TRBV19*01 TRBJ2-7*01 HLA-A*02:01 B2M MHCI GILGFVFTL M1 InfluenzaA PMID:34811538 tetramer-sort yes amplicon-seq transitional T cells between effector and memory populations healthy healthy_1 chip0420_712754 PBMC +4497 CASSLHLRQDEQPQHF TRBV28*01 TRBJ1-5*01 HLA-B*08:01 B2M MHCI QAKWRLQTL EBNA3A EBV PMID:34811538 tetramer-sort yes amplicon-seq effector memory T cells T1D T1D_3 chip0420_488010 PBMC +4498 CAVMSGGYQKVTF TRAV12-2*01 TRAJ13*01 HLA-A*02:01 B2M MHCI LLAGIGTVPI PGT HomoSapiens PMID:34811538 tetramer-sort yes amplicon-seq Naive T cells T1D T1D_1 chip0420_81406 PBMC +4499 CSVGTGGTNEKLFF TRBV29-1*01 TRBJ1-4*01 HLA-A*02:01 B2M MHCI GLCTLVAML BLMF1 EBV PMID:34811538 tetramer-sort yes amplicon-seq effector T cells T1D T1D_2 chip0420_880168 PBMC +4501 CASSPVSGSTYEQYF TRBV3-1*01 TRBJ2-7*01 HLA-A*02:01 B2M MHCI GLCTLVAML BLMF1 EBV PMID:34811538 tetramer-sort yes amplicon-seq effector memory T cells T1D T1D_1 chip0420_310390 PBMC +4502 CATQQGRDSQPQHF TRBV28*01 TRBJ1-5*01 HLA-A*02:01 B2M MHCI GLCTLVAML BLMF1 EBV PMID:34811538 tetramer-sort yes amplicon-seq effector memory T cells T1D T1D_1 chip0420_534741 PBMC +4504 CASSFRSADTQYF TRBV19*01 TRBJ2-3*01 HLA-A*02:01 B2M MHCI GILGFVFTL M1 InfluenzaA PMID:34811538 tetramer-sort yes amplicon-seq transitional T cells between effector and memory populations T1D T1D_1 chip0420_381368 PBMC +4506 CAMSGSNFGNEKLTF TRAV12-3*01 TRAJ48*01 CASSPRASSYSNQPQHF TRBV16*01 TRBJ1-5*01 HLA-A*02:01 B2M MHCI LLAGIGTVPI PGT HomoSapiens PMID:34811538 tetramer-sort yes amplicon-seq Naive T cells healthy healthy_1 chip0420_287452 PBMC +4508 CASSIRSSYEQYF TRBV19*01 TRBJ2-7*01 HLA-A*02:01 B2M MHCI GILGFVFTL M1 InfluenzaA PMID:34811538 tetramer-sort yes amplicon-seq transitional T cells between effector and memory populations T1D T1D_1 chip0420_179655 PBMC +4509 CASSKGSTGTGELFF TRBV2*01 TRBJ2-2*01 HLA-A*02:01 B2M MHCI LLAGIGTVPI PGT HomoSapiens PMID:34811538 tetramer-sort yes amplicon-seq Naive T cells healthy healthy_1 chip0420_59674 PBMC +4511 CAVSDRDGGFKTIF TRAV8-4*01 TRAJ9*01 HLA-A*02:01 B2M MHCI GILGFVFTL M1 InfluenzaA PMID:34811538 tetramer-sort yes amplicon-seq transitional T cells between effector and memory populations T1D T1D_1 chip0420_491538 PBMC +4518 CSARDGTGNGYTF TRBV20-1*01 TRBJ1-2*01 HLA-A*02:01 B2M MHCI GLCTLVAML BLMF1 EBV PMID:34811538 tetramer-sort yes amplicon-seq effector T cells T1D T1D_1 chip0420_883183 PBMC +4520 CASSSGLVAPGELFF TRBV2*01 TRBJ2-2*01 HLA-A*02:01 B2M MHCI GLCTLVAML BLMF1 EBV PMID:34811538 tetramer-sort yes amplicon-seq effector T cells T1D T1D_2 chip0420_10957 PBMC +4521 CAGAAGR??aGADGLTL TRAV27*01 TRAJ45*01 CASSAGQGLPYEQYF TRBV5-1*01 TRBJ2-7*01 HLA-A*02:01 B2M MHCI GILGFVFTL M1 InfluenzaA PMID:34811538 tetramer-sort yes amplicon-seq transitional T cells between effector and memory populations healthy healthy_1 chip0420_284288 PBMC +4524 CASSWGYTGELFF TRBV5-6*01 TRBJ2-2*01 HLA-A*02:01 B2M MHCI YLLPGWKL VP3 RotavirusA PMID:34811538 tetramer-sort yes amplicon-seq Naive T cells healthy healthy_2 chip0420_671444 PBMC +4525 CASLDGQKLLF TRAV12-1*01,TRAV12-3*01 TRAJ16*01 HLA-A*02:01 B2M MHCI LLQEYNWEL GAD65 HomoSapiens PMID:34811538 tetramer-sort yes amplicon-seq Naive T cells T1D T1D_1 chip0420_537970 PBMC +4526 CALPYFGS??aGSNYKLTF TRAV9-2*01 TRAJ53*01 HLA-A*02:01 B2M MHCI ALAGIGILTV MART1 HomoSapiens PMID:34811538 tetramer-sort yes amplicon-seq Naive T cells healthy healthy_1 chip0420_471819 PBMC +4527 CASSLGLSGNTIYF TRBV13*01 TRBJ1-3*01 HLA-A*02:01 B2M MHCI GIIYIIYKL P3A CoxsackievirusB PMID:34811538 tetramer-sort yes amplicon-seq central memory T cells healthy healthy_2 chip0420_143653 PBMC +4530 CASSPGDARGEQYF TRBV5-6*01 TRBJ2-7*01 HLA-A*02:01 B2M MHCI YLLEMLWRL LMP1 EBV PMID:34811538 tetramer-sort yes amplicon-seq central memory T cells T1D T1D_1 chip0420_708793 PBMC +4533 CAVDPWSNQFYF TRAV39*01 TRAJ49*01 CATPPGRDSQPQHF TRBV28*01 TRBJ1-5*01 HLA-A*02:01 B2M MHCI GLCTLVAML BLMF1 EBV PMID:34811538 tetramer-sort yes amplicon-seq effector T cells T1D T1D_1 chip0420_875053 PBMC +4534 CASSPLLESGELFF TRBV27*01 TRBJ2-2*01 HLA-A*02:01 B2M MHCI YLVALGINAV POL HCV PMID:34811538 tetramer-sort yes amplicon-seq natural killer-like T cells T1D T1D_1 chip0420_482206 PBMC +4535 CASSLGGTGVTGELFF TRBV5-6*01 TRBJ2-2*01 HLA-A*02:01 B2M MHCI IQATVMIIV ZNT8 HomoSapiens PMID:34811538 tetramer-sort yes amplicon-seq Naive T cells healthy healthy_1 chip0420_477397 PBMC +4538 CASSIYYEQYF TRBV7-2*01 TRBJ2-7*01 HLA-A*02:01 B2M MHCI LNIDLLWSV IGRP HomoSapiens PMID:34811538 tetramer-sort yes amplicon-seq Naive T cells T1D T1D_1 chip0420_221611 PBMC +4539 CASSKGQLSNTGELFF TRBV9*01 TRBJ2-2*01 HLA-A*02:01 B2M MHCI GLCTLVAML BLMF1 EBV PMID:34811538 tetramer-sort yes amplicon-seq effector T cells T1D T1D_1 chip0420_806903 PBMC +4540 CASSTGQLSNTGELFF TRBV9*01 TRBJ2-2*01 HLA-A*02:01 B2M MHCI GLCTLVAML BLMF1 EBV PMID:34811538 tetramer-sort yes amplicon-seq effector T cells T1D T1D_1 chip0420_280684 PBMC +4542 CSVGSRGTNEKLFF TRBV29-1*01 TRBJ1-4*01 HLA-A*02:01 B2M MHCI GLCTLVAML BLMF1 EBV PMID:34811538 tetramer-sort yes amplicon-seq effector memory T cells T1D T1D_1 chip0420_596209 PBMC +4544 CGTDTTSGTYKYIF TRAV30*01 TRAJ40*01 HLA-B*08:01 B2M MHCI RAKFKQLL BZLF1 EBV PMID:34811538 tetramer-sort yes amplicon-seq effector memory T cells T1D T1D_3 chip0420_362678 PBMC +4545 CASSSGLVAPGELFF TRBV2*01 TRBJ2-2*01 HLA-A*02:01 B2M MHCI GLCTLVAML BLMF1 EBV PMID:34811538 tetramer-sort yes amplicon-seq effector memory T cells T1D T1D_2 chip0420_560558 PBMC +4546 CAVRVSGNTPLVF TRAV20*01 TRAJ29*01 HLA-B*08:01 B2M MHCI YLKDQQLL gp160 HIV-1 PMID:34811538 tetramer-sort yes amplicon-seq Naive T cells healthy healthy_2 chip0420_307432 PBMC +4548 CASSPVGTLYEQYF TRBV18*01 TRBJ2-7*01 HLA-A*02:01 B2M MHCI GILGFVFTL M1 InfluenzaA PMID:34811538 tetramer-sort yes amplicon-seq transitional T cells between effector and memory populations healthy healthy_1 chip0420_215163 PBMC +4551 CASSPVSGSTYEQYF TRBV3-1*01 TRBJ2-7*01 HLA-A*02:01 B2M MHCI GLCTLVAML BLMF1 EBV PMID:34811538 tetramer-sort yes amplicon-seq effector memory T cells T1D T1D_1 chip0420_423477 PBMC +4552 CGAINLDGSARQLTF TRAV34*01 TRAJ22*01 CASTSGTANEQFF TRBV10-3*01 TRBJ2-1*01 HLA-A*02:01 B2M MHCI LLFNILGGWV NS4B HCV PMID:34811538 tetramer-sort yes amplicon-seq Naive T cells healthy healthy_1 chip0420_402299 PBMC +4554 CAVLNGNTAMRF TRAV8-6*01 TRAJ43*01 CAGAAGVGYEQYF TRBV19*01 TRBJ2-7*01 HLA-A*02:01 B2M MHCI ALGIGILTV MART1 HomoSapiens PMID:34811538 tetramer-sort yes amplicon-seq Naive T cells healthy healthy_1 chip0420_475563 PBMC +4557 CASSLAGVDEQFF TRBV6-2*01,TRBV6-3*01 TRBJ2-1*01 HLA-A*02:01 B2M MHCI LLAGIGTVPI PGT HomoSapiens PMID:34811538 tetramer-sort yes amplicon-seq Naive T cells healthy healthy_1 chip0420_198686 PBMC +4558 CALGGLTF TRAV8-1*01 TRAJ22*01 CASSLVNQGVRGYTF TRBV7-2*01 TRBJ1-2*01 HLA-A*02:01 B2M MHCI YVLDHLIVV BRLF1 EBV PMID:34811538 tetramer-sort yes amplicon-seq effector memory T cells T1D T1D_2 chip0420_687003 PBMC +4559 CASSGPGGLGNTEAFF TRAV14/DV4*01 TRAJ40*01 CASSGPGGLGNTEAFF TRBV2*01 TRBJ1-1*01 HLA-A*02:01 B2M MHCI YVLDHLIVV BRLF1 EBV PMID:34811538 tetramer-sort yes amplicon-seq effector memory T cells T1D T1D_1 chip0420_318229 PBMC +4560 CPRRPGQGVSYAQYL TRBV28*01 TRBJ2-7*01 HLA-A*02:01 B2M MHCI GILGFVFTL M1 InfluenzaA PMID:34811538 tetramer-sort yes amplicon-seq transitional T cells between effector and memory populations healthy healthy_1 chip0420_239591 PBMC +4564 CASSQSPGGTQYF TRBV14*01 TRBJ2-3*01 HLA-A*02:01 B2M MHCI GLCTLVAML BLMF1 EBV PMID:34811538 tetramer-sort yes amplicon-seq effector T cells T1D T1D_1 chip0420_624167 PBMC +4566 CASSMRSAYEQYF TRBV19*01 TRBJ2-7*01 HLA-A*02:01 B2M MHCI GILGFVFTL M1 InfluenzaA PMID:34811538 tetramer-sort yes amplicon-seq transitional T cells between effector and memory populations T1D T1D_1 chip0420_685730 PBMC +4568 CATQQGRDSQPQHF TRBV28*01 TRBJ1-5*01 HLA-A*02:01 B2M MHCI GLCTLVAML BLMF1 EBV PMID:34811538 tetramer-sort yes amplicon-seq effector memory T cells T1D T1D_1 chip0420_873055 PBMC +4569 CASRPLLAGGTAAVF TRBV28*01 TRBJ1-1*01 HLA-A*02:01 B2M MHCI YVLDHLIVV BRLF1 EBV PMID:34811538 tetramer-sort yes amplicon-seq effector memory T cells T1D T1D_1 chip0420_636151 PBMC +4570 CSDRDGGNYGYTF TRBV29-1*01 TRBJ1-2*01 HLA-A*02:01 B2M MHCI YVLDHLIVV BRLF1 EBV PMID:34811538 tetramer-sort yes amplicon-seq effector T cells T1D T1D_2 chip0420_432324 PBMC +4573 CATQQGRDSQPQHF TRBV28*01 TRBJ1-5*01 HLA-A*02:01 B2M MHCI GLCTLVAML BLMF1 EBV PMID:34811538 tetramer-sort yes amplicon-seq effector T cells T1D T1D_1 chip0420_435978 PBMC +4575 CAVKDTDKLIF TRAV8-1*01 TRAJ34*01 HLA-A*02:01 B2M MHCI YVLDHLIVV BRLF1 EBV PMID:34811538 tetramer-sort yes amplicon-seq effector T cells T1D T1D_2 chip0420_468916 PBMC +4576 CAISGSSYNEQFF TRBV10-3*01 TRBJ2-1*01 HLA-A*02:01 B2M MHCI KLVALGINAV NS3 HCV PMID:34811538 tetramer-sort yes amplicon-seq transitional T cells between effector and memory populations healthy healthy_2 chip0420_581795 PBMC +4577 CASSSGGNVDTQYF TRBV7-3*01 TRBJ2-3*01 HLA-A*02:01 B2M MHCI GLCTLVAML BLMF1 EBV PMID:34811538 tetramer-sort yes amplicon-seq effector memory T cells T1D T1D_1 chip0420_511012 PBMC +4579 CASSVRAGETQYF TRBV19*01 TRBJ2-5*01 HLA-A*02:01 B2M MHCI GILGFVFTL M1 InfluenzaA PMID:34811538 tetramer-sort yes amplicon-seq transitional T cells between effector and memory populations T1D T1D_1 chip0420_569741 PBMC +4581 CAMSGSNFGNEKLTF TRAV12-3*01 TRAJ48*01 HLA-A*02:01 B2M MHCI LLAGIGTVPI PGT HomoSapiens PMID:34811538 tetramer-sort yes amplicon-seq Naive T cells healthy healthy_1 chip0420_20316 PBMC +4582 CASSIRSAYEQYF TRBV19*01 TRBJ2-7*01 HLA-A*02:01 B2M MHCI GILGFVFTL M1 InfluenzaA PMID:34811538 tetramer-sort yes amplicon-seq transitional T cells between effector and memory populations healthy healthy_1 chip0420_788099 PBMC +4583 CASIGQGADTQYF TRBV6-1*01 TRBJ2-3*01 HLA-A*02:01 B2M MHCI LLFNILGGWV NS4B HCV PMID:34811538 tetramer-sort yes amplicon-seq Naive T cells T1D T1D_1 chip0420_640133 PBMC +4586 CASSFLGLAGEQYF TRBV12-3*01,TRBV12-4*01 TRBJ2-7*01 HLA-A*02:01 B2M MHCI ALAGIGILTV MART1 HomoSapiens PMID:34811538 tetramer-sort yes amplicon-seq Naive T cells T1D T1D_1 chip0420_76708 PBMC +4588 CSVGQALYNEQFF TRBV29-1*01 TRBJ2-1*01 HLA-A*02:01 B2M MHCI YVLDHLIVV BRLF1 EBV PMID:34811538 tetramer-sort yes amplicon-seq effector memory T cells T1D T1D_2 chip0420_147003 PBMC +4589 CADDGVVPg?cDGAAGLTC TRAV21*01 TRAJ45*01 CASSSPGQGTDTQYF TRBV7-9*01 TRBJ2-3*01 HLA-A*02:01 B2M MHCI LLAGIGTVPI PGT HomoSapiens PMID:34811538 tetramer-sort yes amplicon-seq transitional T cells between effector and memory populations healthy healthy_1 chip0420_442025 PBMC +4590 CALYNTDKLIF TRAV9-2*01 TRAJ34*01 CASSPVSGSTYEQYF TRBV3-1*01 TRBJ2-7*01 HLA-A*02:01 B2M MHCI GLCTLVAML BLMF1 EBV PMID:34811538 tetramer-sort yes amplicon-seq effector memory T cells T1D T1D_1 chip0420_293121 PBMC +4591 CSVGSRGTNEKLFF TRBV29-1*01 TRBJ1-4*01 HLA-A*02:01 B2M MHCI GLCTLVAML BLMF1 EBV PMID:34811538 tetramer-sort yes amplicon-seq effector memory T cells T1D T1D_1 chip0420_842796 PBMC +4592 CASSPDQTSSYNEQFF TRBV27*01 TRBJ2-1*01 HLA-A*02:01 B2M MHCI YVLDHLIVV BRLF1 EBV PMID:34811538 tetramer-sort yes amplicon-seq effector memory T cells T1D T1D_1 chip0420_719186 PBMC +4594 CSAVTGGGGTEAFF TRBV20-1*01 TRBJ1-1*01 HLA-A*02:01 B2M MHCI ALAGIGILTV MART1 HomoSapiens PMID:34811538 tetramer-sort yes amplicon-seq central memory T cells T1D T1D_2 chip0420_138552 PBMC +4596 CASSIRSSYEQYF TRBV19*01 TRBJ2-7*01 HLA-A*02:01 B2M MHCI GILGFVFTL M1 InfluenzaA PMID:34811538 tetramer-sort yes amplicon-seq effector T cells healthy healthy_1 chip0420_439871 PBMC +4598 CIVFQDDYKLSF TRAV26-1*01 TRAJ20*01 CSVLNYEQYF TRBV29-1*01 TRBJ2-7*01 HLA-A*02:01 B2M MHCI RGPGRAFVTI GP160 HIV-1 PMID:34811538 tetramer-sort yes amplicon-seq Naive T cells healthy healthy_1 chip0420_310084 PBMC +4600 CAVGAWGGSGGGADGLTF TRAV8-3*01 TRAJ45*01 HLA-A*02:01 B2M MHCI FLWSVFWLI IGRP HomoSapiens PMID:34811538 tetramer-sort yes amplicon-seq Naive T cells T1D T1D_1 chip0420_622934 PBMC +4601 CASISLDPLYF TRBV2*01 TRBJ2-5*01 HLA-A*02:01 B2M MHCI GILGFVFTL M1 InfluenzaA PMID:34811538 tetramer-sort yes amplicon-seq transitional T cells between effector and memory populations healthy healthy_1 chip0420_73049 PBMC +4603 CASSYSLQGNEQYF TRBV6-5*01 TRBJ2-7*01 HLA-A*02:01 B2M MHCI LLAGIGTVPI PGT HomoSapiens PMID:34811538 tetramer-sort yes amplicon-seq Naive T cells T1D T1D_1 chip0420_182710 PBMC +4604 CASSLEGQASSYEQYF TRBV5-1*01 TRBJ2-7*01 HLA-A*02:01 B2M MHCI CLGGLLTMV LMP2A EBV PMID:34811538 tetramer-sort yes amplicon-seq effector memory T cells T1D T1D_2 chip0420_528694 PBMC +4606 CASSTGQLSNTGELFF TRAV3*01 TRAJ4*01 CASSTGQLSNTGELFF TRBV9*01 TRBJ2-2*01 HLA-A*02:01 B2M MHCI GLCTLVAML BLMF1 EBV PMID:34811538 tetramer-sort yes amplicon-seq effector memory T cells T1D T1D_1 chip0420_172126 PBMC +4608 CASSSGQVLPNEQFF TRBV2*01 TRBJ2-1*01 HLA-A*02:01 B2M MHCI GLCTLVAML BLMF1 EBV PMID:34811538 tetramer-sort yes amplicon-seq effector T cells T1D T1D_1 chip0420_592141 PBMC +4610 CSVGSRGTNEKLFF TRBV29-1*01 TRBJ1-4*01 HLA-A*02:01 B2M MHCI GLCTLVAML BLMF1 EBV PMID:34811538 tetramer-sort yes amplicon-seq effector T cells T1D T1D_1 chip0420_759316 PBMC +4612 CVASKGN??cSYDKVIP TRAV13-1*01 TRAJ50*01 CSVGTGGTNEKLFF TRBV29-1*01 TRBJ1-4*01 HLA-A*02:01 B2M MHCI GILGFVFTL M1 InfluenzaA PMID:34811538 tetramer-sort yes amplicon-seq transitional T cells between effector and memory populations healthy healthy_1 chip0420_398660 PBMC +4615 CGTEEPNDYKLSF TRAV30*01 TRAJ20*01 CASNTGQLSNTGELFF TRBV9*01 TRBJ2-2*01 HLA-A*02:01 B2M MHCI GLCTLVAML BLMF1 EBV PMID:34811538 tetramer-sort yes amplicon-seq effector memory T cells T1D T1D_1 chip0420_445954 PBMC +4617 CAVDGGSQGRLIF TRAV12-2*01 TRAJ42*01 CASSRSGTTYEQYF TRBV28*01 TRBJ2-7*01 HLA-A*02:01 B2M MHCI ALGIGILTV MART1 HomoSapiens PMID:34811538 tetramer-sort yes amplicon-seq Naive T cells healthy healthy_1 chip0420_223210 PBMC +4618 CASSPDYPGTAASYEQYF TRBV9*01 TRBJ2-7*01 HLA-A*02:01 B2M MHCI YVLDHLIVV BRLF1 EBV PMID:34811538 tetramer-sort yes amplicon-seq effector T cells T1D T1D_1 chip0420_496945 PBMC +4621 CAVSGGYQKVTF TRAV12-2*01 TRAJ13*01 CASSESIRVQETQYF TRBV2*01 TRBJ2-5*01 HLA-A*02:01 B2M MHCI LLAGIGTVPI PGT HomoSapiens PMID:34811538 tetramer-sort yes amplicon-seq Naive T cells T1D T1D_1 chip0420_657940 PBMC +4623 CASNGWGDYEQYF TRBV7-9*01 TRBJ2-7*01 HLA-A*02:01 B2M MHCI LLFNILGGWV NS4B HCV PMID:34811538 tetramer-sort yes amplicon-seq Naive T cells T1D T1D_1 chip0420_871411 PBMC +4626 RAMTSSTFGPAPFPF TRAV12-3*01 TRAJ48*01 HLA-A*02:01 B2M MHCI LLAGIGTVPI PGT HomoSapiens PMID:34811538 tetramer-sort yes amplicon-seq Naive T cells T1D T1D_1 chip0420_390580 PBMC +4628 CASRALLGSNQPQHF TRBV19*01 TRBJ1-5*01 HLA-A*02:01 B2M MHCI YVLDHLIVV BRLF1 EBV PMID:34811538 tetramer-sort yes amplicon-seq effector memory T cells T1D T1D_1 chip0420_87024 PBMC +4629 CAARGSQGNLIF TRAV38-1*01 TRAJ42*01 HLA-A*02:01 B2M MHCI GILGFVFTL M1 InfluenzaA PMID:34811538 tetramer-sort yes amplicon-seq transitional T cells between effector and memory populations healthy healthy_2 chip0420_823979 PBMC +4631 CSVGTGGTNEKLFF TRBV29-1*01 TRBJ1-4*01 HLA-A*02:01 B2M MHCI GLCTLVAML BLMF1 EBV PMID:34811538 tetramer-sort yes amplicon-seq effector T cells T1D T1D_2 chip0420_365620 PBMC +4633 CASSGLAGGNTEAFF TRBV2*01 TRBJ1-1*01 HLA-A*02:01 B2M MHCI LLAGIGTVPI PGT HomoSapiens PMID:34811538 tetramer-sort yes amplicon-seq Naive T cells T1D T1D_1 chip0420_390193 PBMC +4635 CASSDRGSSFYEQYF TRBV13*01 TRBJ2-7*01 HLA-A*02:01 B2M MHCI RGPGRAFVTI GP160 HIV-1 PMID:34811538 tetramer-sort yes amplicon-seq central memory T cells T1D T1D_2 chip0420_835556 PBMC +4637 CAVLQga?AQKLVF TRAV8-6*01 TRAJ54*01 CSAGADEDYGYTF TRBV20-1*01 TRBJ1-2*01 HLA-A*02:01 B2M MHCI VLFGLGFAI IGRP HomoSapiens PMID:34811538 tetramer-sort yes amplicon-seq Naive T cells healthy healthy_1 chip0420_81649 PBMC +4641 CATEGDSGYSTLTF TRAV17*01 TRAJ11*01 HLA-A*02:01 B2M MHCI FLYALALLL LMP2 EBV PMID:34811538 tetramer-sort yes amplicon-seq central memory T cells T1D T1D_1 chip0420_526293 PBMC +4642 CATEGNSGYSTLTF TRAV17*01 TRAJ11*01 CASSLLGTGLNEQYF TRBV28*01 TRBJ2-7*01 HLA-A*02:01 B2M MHCI FLYALALLL LMP2 EBV PMID:34811538 tetramer-sort yes amplicon-seq central memory T cells T1D T1D_2 chip0420_483513 PBMC +4643 CASSTGQLSNTGELFF TRBV9*01 TRBJ2-2*01 HLA-A*02:01 B2M MHCI GLCTLVAML BLMF1 EBV PMID:34811538 tetramer-sort yes amplicon-seq effector T cells T1D T1D_1 chip0420_212875 PBMC +4646 CASSQGWSYEQYF TRBV14*01 TRBJ2-7*01 HLA-A*02:01 B2M MHCI IQATVMIIV ZNT8 HomoSapiens PMID:34811538 tetramer-sort yes amplicon-seq Naive T cells T1D T1D_2 chip0420_721149 PBMC +4648 CASRSTALGNEQFF TRBV27*01 TRBJ2-1*01 HLA-A*02:01 B2M MHCI ALAGIGILTV MART1 HomoSapiens PMID:34811538 tetramer-sort yes amplicon-seq Naive T cells healthy healthy_1 chip0420_353029 PBMC +4650 CAESVPgc?TASKLTF TRAV5*01 TRAJ44*01 HLA-A*02:01 B2M MHCI YVLDHLIVV BRLF1 EBV PMID:34811538 tetramer-sort yes amplicon-seq effector T cells T1D T1D_1 chip0420_698703 PBMC +4651 CASNEGWNTEAFF TRBV19*01 TRBJ1-1*01 HLA-A*02:01 B2M MHCI YVLDHLIVV BRLF1 EBV PMID:34811538 tetramer-sort yes amplicon-seq effector memory T cells T1D T1D_1 chip0420_406112 PBMC +4653 CASSMSIGANVLTF TRBV19*01 TRBJ2-6*01 HLA-A*02:01 B2M MHCI LLAGIGTVPI PGT HomoSapiens PMID:34811538 tetramer-sort yes amplicon-seq Naive T cells T1D T1D_1 chip0420_780088 PBMC +4654 CASSIESGEQFF TRBV19*01 TRBJ2-1*01 HLA-A*02:01 B2M MHCI GILGFVFTL M1 InfluenzaA PMID:34811538 tetramer-sort yes amplicon-seq transitional T cells between effector and memory populations T1D T1D_1 chip0420_472519 PBMC +4656 CATQQGRDSQPQHF TRBV28*01 TRBJ1-5*01 HLA-A*02:01 B2M MHCI GLCTLVAML BLMF1 EBV PMID:34811538 tetramer-sort yes amplicon-seq effector memory T cells T1D T1D_1 chip0420_323975 PBMC +4657 CALDNYGQNFVF TRAV38-1*01 TRAJ26*01 HLA-A*02:01 B2M MHCI RGPGRAFVTI GP160 HIV-1 PMID:34811538 tetramer-sort yes amplicon-seq Naive T cells healthy healthy_1 chip0420_771180 PBMC +4658 CASRGTSGSYDTGELFF TRBV28*01 TRBJ2-2*01 HLA-A*02:01 B2M MHCI LLAGIGTVPI PGT HomoSapiens PMID:34811538 tetramer-sort yes amplicon-seq Naive T cells healthy healthy_1 chip0420_551597 PBMC +4660 CASSVGDRGaa??gcERARNEQFL TRBV9*01 TRBJ2-1*01 HLA-A*02:01 B2M MHCI LLAGIGTVPI PGT HomoSapiens PMID:34811538 tetramer-sort yes amplicon-seq Naive T cells healthy healthy_1 chip0420_810847 PBMC +4661 CALPDQAGTALIF TRAV8-1*01 TRAJ15*01 CASSPSVLALNTGELFF TRBV6-1*01 TRBJ2-2*01 HLA-A*02:01 B2M MHCI YVLDHLIVV BRLF1 EBV PMID:34811538 tetramer-sort yes amplicon-seq effector memory T cells T1D T1D_2 chip0420_875440 PBMC +4662 CASSLESGEQYF TRBV13*01 TRBJ2-7*01 HLA-A*02:01 B2M MHCI YLLPGWKL VP3 RotavirusA PMID:34811538 tetramer-sort yes amplicon-seq Naive T cells healthy healthy_1 chip0420_464063 PBMC +4663 CALRWDNNAGKSTF TRAV13-1*01 TRAJ27*01 HLA-A*02:01 B2M MHCI YVLDHLIVV BRLF1 EBV PMID:34811538 tetramer-sort yes amplicon-seq effector T cells healthy healthy_1 chip0420_515597 PBMC +4664 CASSVRSQETQYF TRBV19*01 TRBJ2-5*01 HLA-A*02:01 B2M MHCI GILGFVFTL M1 InfluenzaA PMID:34811538 tetramer-sort yes amplicon-seq transitional T cells between effector and memory populations T1D T1D_1 chip0420_154873 PBMC +4666 CASEGARETKTQYF TRBV2*01 TRBJ2-5*01 HLA-A*02:01 B2M MHCI AIIRILQQL VPR HIV-1 PMID:34811538 tetramer-sort yes amplicon-seq Naive T cells healthy healthy_1 chip0420_553387 PBMC +4667 CASSPVSGSTYEQYF TRBV3-1*01 TRBJ2-7*01 HLA-A*02:01 B2M MHCI GLCTLVAML BLMF1 EBV PMID:34811538 tetramer-sort yes amplicon-seq effector memory T cells T1D T1D_1 chip0420_180070 PBMC +4668 CAGGGHGGSQGNLIF TRAV27*01 TRAJ42*01 HLA-A*02:01 B2M MHCI GILGFVFTL M1 InfluenzaA PMID:34811538 tetramer-sort yes amplicon-seq effector T cells healthy healthy_1 chip0420_881961 PBMC +4673 CASSESDPGRGGNQPQHF TRBV10-2*01 TRBJ1-5*01 HLA-A*02:01 B2M MHCI LLAGIGTVPI PGT HomoSapiens PMID:34811538 tetramer-sort yes amplicon-seq Naive T cells T1D T1D_1 chip0420_447477 PBMC +4674 CASSQLGGSYGYTF TRBV6-1*01 TRBJ1-2*01 HLA-A*02:01 B2M MHCI FLYALALLL LMP2 EBV PMID:34811538 tetramer-sort yes amplicon-seq central memory T cells T1D T1D_2 chip0420_93026 PBMC +4677 CSVGSRGTNEKLFF TRBV29-1*01 TRBJ1-4*01 HLA-A*02:01 B2M MHCI GLCTLVAML BLMF1 EBV PMID:34811538 tetramer-sort yes amplicon-seq transitional T cells between effector and memory populations T1D T1D_1 chip0420_763800 PBMC +4679 CASSIRSSYEQYF TRBV19*01 TRBJ2-7*01 HLA-A*02:01 B2M MHCI GILGFVFTL M1 InfluenzaA PMID:34811538 tetramer-sort yes amplicon-seq transitional T cells between effector and memory populations healthy healthy_1 chip0420_682196 PBMC +4680 CASSDRDRGLSAQYF TRBV10-2*01 TRBJ2-7*01 HLA-A*02:01 B2M MHCI LLAGIGTVPI PGT HomoSapiens PMID:34811538 tetramer-sort yes amplicon-seq Naive T cells T1D T1D_1 chip0420_90186 PBMC +4683 CAMSARDDKLIF TRAV12-3*01 TRAJ30*01 CASSYSGTSVVNEQFF TRBV6-2*01,TRBV6-3*01 TRBJ2-1*01 HLA-A*02:01 B2M MHCI LLSLFSLWL ZNT8 HomoSapiens PMID:34811538 tetramer-sort yes amplicon-seq Naive T cells healthy healthy_1 chip0420_608126 PBMC +4684 CASSLTRGSNSEFF TRBV4-1*01 TRBJ2-1*01 HLA-B*08:01 B2M MHCI RAKFKQLL BZLF1 EBV PMID:34811538 tetramer-sort yes amplicon-seq effector memory T cells healthy healthy_2 chip0420_217754 PBMC +4686 CASISLDPLYF TRBV2*01 TRBJ2-5*01 HLA-A*02:01 B2M MHCI GILGFVFTL M1 InfluenzaA PMID:34811538 tetramer-sort yes amplicon-seq transitional T cells between effector and memory populations healthy healthy_1 chip0420_658791 PBMC +4687 CAARA*RGGSKTLF TRAV2*01 TRAJ5*01,TRAJ14*01 CASGTLAGAGQTQYF TRBV3-1*01 TRBJ2-5*01 HLA-A*02:01 B2M MHCI YVLDHLIVV BRLF1 EBV PMID:34811538 tetramer-sort yes amplicon-seq effector memory T cells T1D T1D_2 chip0420_576551 PBMC +4688 CASSPDQTSSYNEQFF TRBV27*01 TRBJ2-1*01 HLA-A*02:01 B2M MHCI YVLDHLIVV BRLF1 EBV PMID:34811538 tetramer-sort yes amplicon-seq effector T cells T1D T1D_1 chip0420_480179 PBMC +4689 CAGANWISDSWGQLQF TRAV20*01 TRAJ24*01 HLA-A*02:01 B2M MHCI LLAGIGTVPI PGT HomoSapiens PMID:34811538 tetramer-sort yes amplicon-seq Naive T cells healthy healthy_1 chip0420_198712 PBMC +4691 CAVKDTDKLIF TRAV8-1*01 TRAJ34*01 HLA-A*02:01 B2M MHCI YVLDHLIVV BRLF1 EBV PMID:34811538 tetramer-sort yes amplicon-seq effector T cells T1D T1D_2 chip0420_876096 PBMC +4692 CASSPDRVETQYF TRBV18*01 TRBJ2-5*01 HLA-A*02:01 B2M MHCI LLAGIGTVPI PGT HomoSapiens PMID:34811538 tetramer-sort yes amplicon-seq Naive T cells T1D T1D_1 chip0420_819037 PBMC +4693 CSASDRNSNQPQHF TRBV20-1*01 TRBJ1-5*01 HLA-B*08:01 B2M MHCI MMIARFKM GAD2 HomoSapiens PMID:34811538 tetramer-sort yes amplicon-seq Naive T cells T1D T1D_3 chip0420_361730 PBMC +4695 CAMSPSNFGNEKLTF TRAV12-3*01 TRAJ48*01 HLA-A*02:01 B2M MHCI LLAGIGTVPI PGT HomoSapiens PMID:34811538 tetramer-sort yes amplicon-seq Naive T cells T1D T1D_1 chip0420_761117 PBMC +4698 CVVTLGFGNVLHCGSGTQV TRAV12-1*01 TRAJ41*01 CSVDLGQGTGELFF TRBV29-1*01 TRBJ2-2*01 HLA-A*02:01 B2M MHCI LLAGIGTVPI PGT HomoSapiens PMID:34811538 tetramer-sort yes amplicon-seq Naive T cells healthy healthy_1 chip0420_231333 PBMC +4699 CASSTGSYGYTF TRBV19*01 TRBJ1-2*01 HLA-A*02:01 B2M MHCI GILGFVFTL M1 InfluenzaA PMID:34811538 tetramer-sort yes amplicon-seq transitional T cells between effector and memory populations healthy healthy_1 chip0420_287343 PBMC +4700 CASSYSGGPDTQYF TRBV6-5*01 TRBJ2-3*01 HLA-A*02:01 B2M MHCI LLAGIGTVPI PGT HomoSapiens PMID:34811538 tetramer-sort yes amplicon-seq Naive T cells healthy healthy_1 chip0420_133682 PBMC +4702 CAVKDTDKLIF TRAV8-1*01 TRAJ34*01 CAWGVQLAGVDEQYF TRBV30*01 TRBJ2-7*01 HLA-A*02:01 B2M MHCI YVLDHLIVV BRLF1 EBV PMID:34811538 tetramer-sort yes amplicon-seq effector memory T cells T1D T1D_2 chip0420_716661 PBMC +4703 CSVGGTFYGYTF TRBV29-1*01 TRBJ1-2*01 HLA-A*02:01 B2M MHCI GLCTLVAML BLMF1 EBV PMID:34811538 tetramer-sort yes amplicon-seq effector memory T cells T1D T1D_2 chip0420_569702 PBMC +4704 CAMTLSNFGNEKLTF TRAV12-3*01 TRAJ48*01 CASSQDGGQYREKLFF TRBV14*01 TRBJ1-4*01 HLA-A*02:01 B2M MHCI LLAGIGTVPI PGT HomoSapiens PMID:34811538 tetramer-sort yes amplicon-seq Naive T cells healthy healthy_1 chip0420_328034 PBMC +4707 CASSQSPGGTQSF TRBV14*01 TRBJ2-3*01 HLA-A*02:01 B2M MHCI GLCTLVAML BLMF1 EBV PMID:34811538 tetramer-sort yes amplicon-seq effector memory T cells T1D T1D_1 chip0420_335287 PBMC +4710 CASSTGLYGYTF TRBV19*01 TRBJ1-2*01 HLA-A*02:01 B2M MHCI GILGFVFTL M1 InfluenzaA PMID:34811538 tetramer-sort yes amplicon-seq transitional T cells between effector and memory populations T1D T1D_1 chip0420_118108 PBMC +4713 CSVGSRGTNEKLFF TRBV29-1*01 TRBJ1-4*01 HLA-A*02:01 B2M MHCI GLCTLVAML BLMF1 EBV PMID:34811538 tetramer-sort yes amplicon-seq effector T cells T1D T1D_1 chip0420_1430 PBMC +4714 CASSTGRLSNTGELLF TRBV9*01 TRBJ2-2*01 HLA-A*02:01 B2M MHCI GLCTLVAML BLMF1 EBV PMID:34811538 tetramer-sort yes amplicon-seq effector memory T cells T1D T1D_1 chip0420_269118 PBMC +4715 CVVNLPNDYKLSF TRAV12-1*01 TRAJ20*01 HLA-A*02:01 B2M MHCI GLCTLVAML BLMF1 EBV PMID:34811538 tetramer-sort yes amplicon-seq effector T cells T1D T1D_2 chip0420_667087 PBMC +4716 CIVRGPtt?GHEKLTF TRAV26-1*01 TRAJ48*01 HLA-A*02:01 B2M MHCI LLFNILGGWV NS4B HCV PMID:34811538 tetramer-sort yes amplicon-seq Naive T cells healthy healthy_1 chip0420_544624 PBMC +4717 CAVSDtt?GNDMRF TRAV8-4*01 TRAJ43*01 HLA-A*02:01 B2M MHCI GLCTLVAML BLMF1 EBV PMID:34811538 tetramer-sort yes amplicon-seq effector T cells T1D T1D_1 chip0420_195935 PBMC +4718 YAVSDRGTTNTGKLIF TRAV8-4*01 TRAJ37*01 HLA-A*02:01 B2M MHCI ELAEYLYNI GAD65 HomoSapiens PMID:34811538 tetramer-sort yes amplicon-seq Naive T cells healthy healthy_1 chip0420_539389 PBMC +4722 CASSLTGSF TRBV7-8*01 TRBJ1-2*01 HLA-B*08:01 B2M MHCI RAKFKQLL BZLF1 EBV PMID:34811538 tetramer-sort yes amplicon-seq effector memory T cells T1D T1D_3 chip0420_139746 PBMC +4724 CASSARQGLPYEQYF TRBV5-1*01 TRBJ2-7*01 HLA-A*02:01 B2M MHCI GILGFVFTL M1 InfluenzaA PMID:34811538 tetramer-sort yes amplicon-seq transitional T cells between effector and memory populations healthy healthy_1 chip0420_471782 PBMC +4726 CASSKRSTDTQYF TRBV19*01 TRBJ2-3*01 HLA-A*02:01 B2M MHCI GILGFVFTL M1 InfluenzaA PMID:34811538 tetramer-sort yes amplicon-seq transitional T cells between effector and memory populations healthy healthy_1 chip0420_154655 PBMC +4727 CASNFPQNPYEQYF TRBV28*01 TRBJ2-7*01 HLA-A*02:01 B2M MHCI ALAGIGILTV MART1 HomoSapiens PMID:34811538 tetramer-sort yes amplicon-seq Naive T cells healthy healthy_1 chip0420_36479 PBMC +4729 CASSLSDTQYF TRBV27*01 TRBJ2-3*01 HLA-A*02:01 B2M MHCI ALAGIGILTV MART1 HomoSapiens PMID:34811538 tetramer-sort yes amplicon-seq central memory T cells T1D T1D_2 chip0420_155464 PBMC +4731 CASSIRSSYEQYF TRBV19*01 TRBJ2-7*01 HLA-A*02:01 B2M MHCI GILGFVFTL M1 InfluenzaA PMID:34811538 tetramer-sort yes amplicon-seq transitional T cells between effector and memory populations healthy healthy_1 chip0420_673737 PBMC +4732 CASSDGRVHPGTQYF TRBV2*01 TRBJ2-5*01 HLA-A*02:01 B2M MHCI GLCTLVAML BLMF1 EBV PMID:34811538 tetramer-sort yes amplicon-seq effector memory T cells T1D T1D_1 chip0420_660159 PBMC +4734 CASSIRSTDTQYF TRBV19*01 TRBJ2-3*01 HLA-A*02:01 B2M MHCI GILGFVFTL M1 InfluenzaA PMID:34811538 tetramer-sort yes amplicon-seq transitional T cells between effector and memory populations healthy healthy_1 chip0420_533581 PBMC +4737 CASSIRSSYEQYF TRBV19*01 TRBJ2-7*01 HLA-A*02:01 B2M MHCI GILGFVFTL M1 InfluenzaA PMID:34811538 tetramer-sort yes amplicon-seq transitional T cells between effector and memory populations healthy healthy_1 chip0420_362419 PBMC +4740 CSAKHENHcg?GRRHNEQFF TRBV20-1*01 TRBJ2-1*01 HLA-A*02:01 B2M MHCI ALAGIGILTV MART1 HomoSapiens PMID:34811538 tetramer-sort yes amplicon-seq Naive T cells healthy healthy_2 chip0420_234972 PBMC +4742 CASSIIDRTLGTDTQYF TRBV19*01 TRBJ2-3*01 HLA-A*02:01 B2M MHCI GILGFVFTL M1 InfluenzaA PMID:34811538 tetramer-sort yes amplicon-seq transitional T cells between effector and memory populations T1D T1D_1 chip0420_759473 PBMC +4743 CASSYGLAGINEQFF TRBV6-2*01,TRBV6-3*01 TRBJ2-1*01 HLA-A*02:01 B2M MHCI YVLDHLIVV BRLF1 EBV PMID:34811538 tetramer-sort yes amplicon-seq effector T cells T1D T1D_1 chip0420_436230 PBMC +4744 CAGGGSQGNLIF TRAV27*01 TRAJ42*01 CASSIRSSYEQYF TRBV19*01 TRBJ2-7*01 HLA-A*02:01 B2M MHCI GILGFVFTL M1 InfluenzaA PMID:34811538 tetramer-sort yes amplicon-seq transitional T cells between effector and memory populations healthy healthy_1 chip0420_145459 PBMC +4745 CASSSPWGKNTEAFF TRBV28*01 TRBJ1-1*01 HLA-A*02:01 B2M MHCI LLAGIGTVPI PGT HomoSapiens PMID:34811538 tetramer-sort yes amplicon-seq Naive T cells healthy healthy_1 chip0420_374606 PBMC +4747 CSVGSRGTNEKLFF TRBV29-1*01 TRBJ1-4*01 HLA-A*02:01 B2M MHCI GLCTLVAML BLMF1 EBV PMID:34811538 tetramer-sort yes amplicon-seq effector T cells T1D T1D_1 chip0420_626541 PBMC +4748 CVVNGRDSSYKLIF TRAV12-1*01 TRAJ12*01 HLA-A*02:01 B2M MHCI GLCTLVAML BLMF1 EBV PMID:34811538 tetramer-sort yes amplicon-seq effector T cells T1D T1D_2 chip0420_490871 PBMC +4751 CSVGTGGTNEKLFF TRBV29-1*01 TRBJ1-4*01 HLA-A*02:01 B2M MHCI GLCTLVAML BLMF1 EBV PMID:34811538 tetramer-sort yes amplicon-seq effector memory T cells T1D T1D_2 chip0420_371547 PBMC +4753 CASSQGLANILTF TRBV3-1*01 TRBJ2-6*01 HLA-A*02:01 B2M MHCI YVLDHLIVV BRLF1 EBV PMID:34811538 tetramer-sort yes amplicon-seq effector memory T cells T1D T1D_1 chip0420_294859 PBMC +4759 CASSSGGPGDQPQHF TRBV7-9*01 TRBJ1-5*01 HLA-B*08:01 B2M MHCI RAKFKQLL BZLF1 EBV PMID:34811538 tetramer-sort yes amplicon-seq effector memory T cells T1D T1D_3 chip0420_615690 PBMC +4760 CAESTSGGKLIF TRAV5*01 TRAJ23*01 CSVGSRGTNEKLFF TRBV29-1*01 TRBJ1-4*01 HLA-A*02:01 B2M MHCI GLCTLVAML BLMF1 EBV PMID:34811538 tetramer-sort yes amplicon-seq effector memory T cells T1D T1D_1 chip0420_605782 PBMC +4761 CGAVTAMRF TRAV34*01 TRAJ43*01 CASSSGLVAPGELFF TRBV2*01 TRBJ2-2*01 HLA-A*02:01 B2M MHCI GILGFVFTL M1 InfluenzaA PMID:34811538 tetramer-sort yes amplicon-seq transitional T cells between effector and memory populations T1D T1D_1 chip0420_189305 PBMC +4762 CTMNDWGKLQF TRAV12-3*01 TRAJ24*01 CASSPGEGIGSYEQYF TRBV2*01 TRBJ2-7*01 HLA-A*02:01 B2M MHCI ILSAHVATA ZNT8 HomoSapiens PMID:34811538 tetramer-sort yes amplicon-seq Naive T cells healthy healthy_1 chip0420_808738 PBMC +4763 CAAGDNNDMRF TRAV12-1*01 TRAJ43*01 HLA-A*02:01 B2M MHCI ALAGIGILTV MART1 HomoSapiens PMID:34811538 tetramer-sort yes amplicon-seq central memory T cells T1D T1D_2 chip0420_584434 PBMC +4764 CASSRGTGLDLNEQFF TRBV12-3*01,TRBV12-4*01 TRBJ2-1*01 HLA-A*02:01 B2M MHCI LLAGIGTVPI PGT HomoSapiens PMID:34811538 tetramer-sort yes amplicon-seq Naive T cells healthy healthy_1 chip0420_572333 PBMC +4765 CATQQGRDSQPQHF TRBV28*01 TRBJ1-5*01 HLA-A*02:01 B2M MHCI GLCTLVAML BLMF1 EBV PMID:34811538 tetramer-sort yes amplicon-seq effector T cells T1D T1D_1 chip0420_193978 PBMC +4769 CSVGEEGQGEETQYF TRBV29-1*01 TRBJ2-5*01 HLA-A*02:01 B2M MHCI LLAGIGTVPI PGT HomoSapiens PMID:34811538 tetramer-sort yes amplicon-seq Naive T cells T1D T1D_1 chip0420_171451 PBMC +4773 CGTEEPNDYKLSF TRAV30*01 TRAJ20*01 CASSTGQLSNTGELFF TRBV9*01 TRBJ2-2*01 HLA-A*02:01 B2M MHCI GLCTLVAML BLMF1 EBV PMID:34811538 tetramer-sort yes amplicon-seq effector memory T cells T1D T1D_1 chip0420_797524 PBMC +4774 CASSLPLRQDEQPQHF TRBV28*01 TRBJ1-5*01 HLA-B*08:01 B2M MHCI QAKWRLQTL EBNA3A EBV PMID:34811538 tetramer-sort yes amplicon-seq effector memory T cells T1D T1D_3 chip0420_87418 PBMC +4776 CSVGSRGTNEKLFF TRBV29-1*01 TRBJ1-4*01 HLA-A*02:01 B2M MHCI GLCTLVAML BLMF1 EBV PMID:34811538 tetramer-sort yes amplicon-seq effector memory T cells T1D T1D_1 chip0420_286372 PBMC +4777 CASSLGSGGWETQYF TRBV13*01 TRBJ2-5*01 HLA-A*02:01 B2M MHCI TIADFWQMV PTPRN HomoSapiens PMID:34811538 tetramer-sort yes amplicon-seq Naive T cells healthy healthy_2 chip0420_830701 PBMC +4780 CASSLGESMNTEAFF TRBV5-6*01 TRBJ1-1*01 HLA-A*02:01 B2M MHCI FLGKIWPSYK GAG HIV-1 PMID:34811538 tetramer-sort yes amplicon-seq Naive T cells T1D T1D_2 chip0420_535338 PBMC +4782 CSVGSRGTNEKLFF TRBV29-1*01 TRBJ1-4*01 HLA-A*02:01 B2M MHCI GLCTLVAML BLMF1 EBV PMID:34811538 tetramer-sort yes amplicon-seq effector memory T cells T1D T1D_1 chip0420_562030 PBMC +4783 CAMSLSNFGNEKLTF TRAV12-3*01 TRAJ48*01 HLA-A*02:01 B2M MHCI LLAGIGTVPI PGT HomoSapiens PMID:34811538 tetramer-sort yes amplicon-seq Naive T cells T1D T1D_2 chip0420_326370 PBMC +4784 CAYRSPPSSAALVF TRAV38-2/DV8*01 TRAJ57*01 HLA-A*02:01 B2M MHCI GILGFVFTL M1 InfluenzaA PMID:34811538 tetramer-sort yes amplicon-seq transitional T cells between effector and memory populations T1D T1D_1 chip0420_131716 PBMC +4787 CLLHL*Fa?gGAQKLVF TRAV40*01 TRAJ54*01 CASSFLGTGLNEQYF TRBV28*01 TRBJ2-7*01 HLA-A*02:01 B2M MHCI LLAGIGTVPI PGT HomoSapiens PMID:34811538 tetramer-sort yes amplicon-seq Naive T cells healthy healthy_1 chip0420_216940 PBMC +4790 CAELGAPARWGPLPF TRAV13-2*01 TRAJ24*01 CSARSPVRDTEAFF TRBV20-1*01 TRBJ1-1*01 HLA-A*02:01 B2M MHCI AIIRILQQL VPR HIV-1 PMID:34811538 tetramer-sort yes amplicon-seq Naive T cells T1D T1D_1 chip0420_250412 PBMC +4791 CASSSGGNVDTQYF TRBV7-3*01 TRBJ2-3*01 HLA-A*02:01 B2M MHCI GLCTLVAML BLMF1 EBV PMID:34811538 tetramer-sort yes amplicon-seq effector memory T cells T1D T1D_1 chip0420_227714 PBMC +4792 CAGGGAGYGYTF TRBV7-8*01 TRBJ1-2*01 HLA-A*02:01 B2M MHCI GILGFVFTL M1 InfluenzaA PMID:34811538 tetramer-sort yes amplicon-seq transitional T cells between effector and memory populations T1D T1D_1 chip0420_637552 PBMC +4793 CASSIRSSYEQYF TRBV19*01 TRBJ2-7*01 HLA-A*02:01 B2M MHCI GILGFVFTL M1 InfluenzaA PMID:34811538 tetramer-sort yes amplicon-seq transitional T cells between effector and memory populations healthy healthy_1 chip0420_45546 PBMC +4797 CAVVRNca??gtGSRLPF TRAV41*01 TRAJ10*01 HLA-A*02:01 B2M MHCI GILGFVFTL M1 InfluenzaA PMID:34811538 tetramer-sort yes amplicon-seq transitional T cells between effector and memory populations healthy healthy_1 chip0420_809413 PBMC +4799 CASSPVSGSTYEQYF TRBV3-1*01 TRBJ2-7*01 HLA-A*02:01 B2M MHCI GLCTLVAML BLMF1 EBV PMID:34811538 tetramer-sort yes amplicon-seq effector memory T cells T1D T1D_1 chip0420_659586 PBMC +4800 CALYRCW??cNNRKLIW TRAV13-2*01 TRAJ38*01 CASSYWGNQPQHF TRBV6-2*01,TRBV6-3*01 TRBJ1-5*01 HLA-A*02:01 B2M MHCI ELAGIGILTV MART1 HomoSapiens PMID:34811538 tetramer-sort yes amplicon-seq central memory T cells healthy healthy_2 chip0420_619441 PBMC +4804 CSAIDTSGTGGYEQYF TRBV20-1*01 TRBJ2-7*01 HLA-A*02:01 B2M MHCI LLFNILGGWV NS4B HCV PMID:34811538 tetramer-sort yes amplicon-seq transitional T cells between effector and memory populations T1D T1D_1 chip0420_502572 PBMC +4805 CASSSGLVAPGELFF TRBV2*01 TRBJ2-2*01 HLA-A*02:01 B2M MHCI GLCTLVAML BLMF1 EBV PMID:34811538 tetramer-sort yes amplicon-seq effector memory T cells T1D T1D_2 chip0420_67142 PBMC +4814 CASSINGGRRDGYTF TRBV19*01 TRBJ1-2*01 HLA-A*02:01 B2M MHCI GILGFVFTL M1 InfluenzaA PMID:34811538 tetramer-sort yes amplicon-seq transitional T cells between effector and memory populations T1D T1D_1 chip0420_197307 PBMC +4815 CAVGEGSYIPTF TRAV12-2*01 TRAJ6*01 HLA-A*02:01 B2M MHCI LLAGIGTVPI PGT HomoSapiens PMID:34811538 tetramer-sort yes amplicon-seq transitional T cells between effector and memory populations T1D T1D_2 chip0420_708850 PBMC +4817 CASSHGEQFF TRBV2*01 TRBJ2-1*01 HLA-A*02:01 B2M MHCI SLISGMWLL VP2 RotavirusA PMID:34811538 tetramer-sort yes amplicon-seq Naive T cells T1D T1D_1 chip0420_138839 PBMC +4822 CASRMNRVRQPTDTQYF TRBV5-6*01 TRBJ2-3*01 HLA-A*02:01 B2M MHCI LLAGIGTVPI PGT HomoSapiens PMID:34811538 tetramer-sort yes amplicon-seq Naive T cells healthy healthy_1 chip0420_98293 PBMC +4823 CASSTGQLSNTGELFF TRBV9*01 TRBJ2-2*01 HLA-A*02:01 B2M MHCI GLCTLVAML BLMF1 EBV PMID:34811538 tetramer-sort yes amplicon-seq effector memory T cells T1D T1D_1 chip0420_790961 PBMC +4825 CAGASGGSQGNLIF TRAV27*01 TRAJ42*01 HLA-A*02:01 B2M MHCI GILGFVFTL M1 InfluenzaA PMID:34811538 tetramer-sort yes amplicon-seq transitional T cells between effector and memory populations healthy healthy_2 chip0420_792083 PBMC +4826 CASSDWREDTGELFF TRBV25-1*01 TRBJ2-2*01 HLA-A*02:01 B2M MHCI GIIYIIYKL P3A CoxsackievirusB PMID:34811538 tetramer-sort yes amplicon-seq central memory T cells T1D T1D_1 chip0420_493083 PBMC +4831 CGTQENDSWGKLQF TRAV30*01 TRAJ24*01 HLA-A*02:01 B2M MHCI GILGFVFTL M1 InfluenzaA PMID:34811538 tetramer-sort yes amplicon-seq transitional T cells between effector and memory populations T1D T1D_1 chip0420_675932 PBMC +4832 CGTEEPNDYKLSF TRAV30*01 TRAJ20*01 HLA-A*02:01 B2M MHCI GLCTLVAML BLMF1 EBV PMID:34811538 tetramer-sort yes amplicon-seq effector T cells T1D T1D_1 chip0420_722463 PBMC +4833 CASSGGAVAPSEQFF TRBV2*01 TRBJ2-1*01 HLA-A*02:01 B2M MHCI GLCTLVAML BLMF1 EBV PMID:34811538 tetramer-sort yes amplicon-seq effector memory T cells T1D T1D_2 chip0420_152130 PBMC +4836 CATSDHcg?PRNEQFF TRBV24-1*01 TRBJ2-1*01 HLA-A*02:01 B2M MHCI LLAGIGTVPI PGT HomoSapiens PMID:34811538 tetramer-sort yes amplicon-seq Naive T cells healthy healthy_1 chip0420_438700 PBMC +4840 CASSVQGGNYGYTF TRBV6-1*01 TRBJ1-2*01 HLA-A*02:01 B2M MHCI FLYALALLL LMP2 EBV PMID:34811538 tetramer-sort yes amplicon-seq central memory T cells T1D T1D_1 chip0420_759332 PBMC +4843 CALNTDKLIF TRAV8-1*01 TRAJ34*01 HLA-A*02:01 B2M MHCI YVLDHLIVV BRLF1 EBV PMID:34811538 tetramer-sort yes amplicon-seq effector T cells T1D T1D_2 chip0420_791385 PBMC +4845 CASSEDGMNTEAFF TRBV10-2*01 TRBJ1-1*01 HLA-A*02:01 B2M MHCI CLGGLLTMV LMP2A EBV PMID:34811538 tetramer-sort yes amplicon-seq effector memory T cells T1D T1D_2 chip0420_290060 PBMC +4846 CSVGTGGTNEKLFF TRBV29-1*01 TRBJ1-4*01 HLA-A*02:01 B2M MHCI GLCTLVAML BLMF1 EBV PMID:34811538 tetramer-sort yes amplicon-seq effector memory T cells T1D T1D_2 chip0420_17690 PBMC +4850 CASSSGLVAPGELFF TRBV2*01 TRBJ2-2*01 HLA-A*02:01 B2M MHCI GLCTLVAML BLMF1 EBV PMID:34811538 tetramer-sort yes amplicon-seq effector memory T cells T1D T1D_2 chip0420_160612 PBMC +4852 CASSTGQLSNTGELFF TRBV9*01 TRBJ2-2*01 HLA-A*02:01 B2M MHCI GLCTLVAML BLMF1 EBV PMID:34811538 tetramer-sort yes amplicon-seq effector T cells T1D T1D_1 chip0420_811809 PBMC +4854 CAVSDRDGGFKTIF TRAV8-4*01 TRAJ9*01 CASSINGGRRDGYTF TRBV19*01 TRBJ1-2*01 HLA-A*02:01 B2M MHCI GILGFVFTL M1 InfluenzaA PMID:34811538 tetramer-sort yes amplicon-seq transitional T cells between effector and memory populations T1D T1D_1 chip0420_13966 PBMC +4855 CVVQWTTGTASKLTF TRAV12-1*01 TRAJ44*01 HLA-A*02:01 B2M MHCI LNIDLLWSV IGRP HomoSapiens PMID:34811538 tetramer-sort yes amplicon-seq transitional T cells between effector and memory populations T1D T1D_2 chip0420_235946 PBMC +4862 CALPSGGYNKLIF TRAV16*01 TRAJ4*01 HLA-A*02:01 B2M MHCI FLYALALLL LMP2 EBV PMID:34811538 tetramer-sort yes amplicon-seq effector memory T cells T1D T1D_1 chip0420_562862 PBMC +4864 CSVGSRGTNEKLFF TRBV29-1*01 TRBJ1-4*01 HLA-A*02:01 B2M MHCI GLCTLVAML BLMF1 EBV PMID:34811538 tetramer-sort yes amplicon-seq effector T cells T1D T1D_1 chip0420_73605 PBMC +4869 CASSYMPCGLAKDGELFF TRBV6-9*01 TRBJ2-2*01 HLA-A*02:01 B2M MHCI YLVALGINAV POL HCV PMID:34811538 tetramer-sort yes amplicon-seq transitional T cells between effector and memory populations T1D T1D_1 chip0420_213792 PBMC +4870 CMVNTAGKSAF TRAV12-1*01 TRAJ27*01 CASSTIVGGGTDYGYTF TRBV2*01 TRBJ1-2*01 HLA-A*01:01 B2M MHCI HSNLNDATY NP InfluenzaA PMID:34811538 tetramer-sort yes amplicon-seq Naive T cells healthy healthy_2 chip0420_417665 PBMC +4872 CSVGSRGTNEKLFF TRBV29-1*01 TRBJ1-4*01 HLA-A*02:01 B2M MHCI GLCTLVAML BLMF1 EBV PMID:34811538 tetramer-sort yes amplicon-seq effector memory T cells T1D T1D_1 chip0420_1880 PBMC +4873 CAGAQDNAGNMLTF TRAV27*01 TRAJ39*01 HLA-A*02:01 B2M MHCI GILGFVFTL M1 InfluenzaA PMID:34811538 tetramer-sort yes amplicon-seq transitional T cells between effector and memory populations healthy healthy_1 chip0420_699729 PBMC +4874 CSVGGSFYGYTF TRBV29-1*01 TRBJ1-2*01 HLA-A*02:01 B2M MHCI GLCTLVAML BLMF1 EBV PMID:34811538 tetramer-sort yes amplicon-seq effector T cells T1D T1D_2 chip0420_391522 PBMC +4875 CASSQSPGGTQYF TRBV14*01 TRBJ2-3*01 HLA-A*02:01 B2M MHCI GLCTLVAML BLMF1 EBV PMID:34811538 tetramer-sort yes amplicon-seq effector T cells T1D T1D_1 chip0420_96900 PBMC +4876 CAFMTNAGGTSYGKLTF TRAV38-1*01 TRAJ52*01 HLA-A*02:01 B2M MHCI GILGFVFTL M1 InfluenzaA PMID:34811538 tetramer-sort yes amplicon-seq transitional T cells between effector and memory populations T1D T1D_1 chip0420_848783 PBMC +4878 CASSAGQGLPYEQYF TRBV5-1*01 TRBJ2-7*01 HLA-A*02:01 B2M MHCI GILGFVFTL M1 InfluenzaA PMID:34811538 tetramer-sort yes amplicon-seq transitional T cells between effector and memory populations healthy healthy_1 chip0420_502765 PBMC +4881 PIVRAGRPRWGPLPF TRAV26-1*01 TRAJ24*01 CASSDFLNTEAFF TRBV27*01 TRBJ1-1*01 HLA-B*08:01 B2M MHCI RAKFKQLL BZLF1 EBV PMID:34811538 tetramer-sort yes amplicon-seq effector memory T cells T1D T1D_3 chip0420_131625 PBMC +4882 CASSPDQTSSYNEQFF TRBV27*01 TRBJ2-1*01 HLA-A*02:01 B2M MHCI YVLDHLIVV BRLF1 EBV PMID:34811538 tetramer-sort yes amplicon-seq effector memory T cells T1D T1D_1 chip0420_310757 PBMC +4883 CAVSPNYGGSQGNLIF TRAV41*01 TRAJ42*01 HLA-A*02:01 B2M MHCI VVTGVLVYL ZNT8 HomoSapiens PMID:34811538 tetramer-sort yes amplicon-seq Naive T cells T1D T1D_1 chip0420_617832 PBMC +4886 CASSSEDFTGITGNTIYF TRBV11-1*01 TRBJ1-3*01 HLA-A*02:01 B2M MHCI LLAGIGTVPI PGT HomoSapiens PMID:34811538 tetramer-sort yes amplicon-seq Naive T cells healthy healthy_1 chip0420_737855 PBMC +4887 CSVGTGGTNEKLFF TRBV29-1*01 TRBJ1-4*01 HLA-A*02:01 B2M MHCI GLCTLVAML BLMF1 EBV PMID:34811538 tetramer-sort yes amplicon-seq effector memory T cells T1D T1D_1 chip0420_573388 PBMC +4891 CASSLVGVNTGELFF TRBV28*01 TRBJ2-2*01 HLA-A*02:01 B2M MHCI ALAGIGILTV MART1 HomoSapiens PMID:34811538 tetramer-sort yes amplicon-seq Naive T cells healthy healthy_1 chip0420_439031 PBMC +4892 CAAYCGta??acTDKPIF TRAV29/DV5*01 TRAJ34*01 CASSFGDRGRGEKLFF TRBV28*01 TRBJ1-4*01 HLA-A*02:01 B2M MHCI LLAGIGTVPI PGT HomoSapiens PMID:34811538 tetramer-sort yes amplicon-seq Naive T cells healthy healthy_1 chip0420_351792 PBMC +4897 RRVGPGgg?H**QTFF TRBV29-1*01 TRBJ1-4*01 HLA-A*02:01 B2M MHCI YLLPGWKL VP3 RotavirusA PMID:34811538 tetramer-sort yes amplicon-seq Naive T cells T1D T1D_1 chip0420_59533 PBMC +4900 CASRFGTGGYEQYF TRBV28*01 TRBJ2-7*01 HLA-A*02:01 B2M MHCI RLLPLLALLAL INS HomoSapiens PMID:34811538 tetramer-sort yes amplicon-seq Naive T cells T1D T1D_1 chip0420_496033 PBMC +4901 CAGRREgt?SNYKLTF TRAV35*01 TRAJ53*01 HLA-A*02:01 B2M MHCI LLAGIGTVPI PGT HomoSapiens PMID:34811538 tetramer-sort yes amplicon-seq Naive T cells healthy healthy_1 chip0420_242781 PBMC +4902 CASSIRSSYEQYF TRBV19*01 TRBJ2-7*01 HLA-A*02:01 B2M MHCI GILGFVFTL M1 InfluenzaA PMID:34811538 tetramer-sort yes amplicon-seq transitional T cells between effector and memory populations healthy healthy_1 chip0420_603250 PBMC +4903 CASSVRAGETQYF TRBV19*01 TRBJ2-5*01 HLA-A*02:01 B2M MHCI GILGFVFTL M1 InfluenzaA PMID:34811538 tetramer-sort yes amplicon-seq transitional T cells between effector and memory populations T1D T1D_1 chip0420_422022 PBMC +4904 CASSDGRVHPGTQYF TRBV2*01 TRBJ2-5*01 HLA-A*02:01 B2M MHCI GLCTLVAML BLMF1 EBV PMID:34811538 tetramer-sort yes amplicon-seq effector memory T cells T1D T1D_1 chip0420_237724 PBMC +4906 CAVNSNYQLIW TRAV8-1*01 TRAJ33*01 CASSLYYNEQFF TRBV12-3*01,TRBV12-4*01 TRBJ2-1*01 HLA-A*02:01 B2M MHCI YVLDHLIVV BRLF1 EBV PMID:34811538 tetramer-sort yes amplicon-seq effector memory T cells T1D T1D_2 chip0420_732131 PBMC +4910 CAVRDDRDAKIIF TRAV3*01 TRAJ30*01 HLA-A*02:01 B2M MHCI GLCTLVAML BLMF1 EBV PMID:34811538 tetramer-sort yes amplicon-seq effector memory T cells T1D T1D_2 chip0420_94898 PBMC +4911 CASRAGAGGTQYF TRBV10-2*01 TRBJ2-3*01 HLA-A*02:01 B2M MHCI GLCTLVAML BLMF1 EBV PMID:34811538 tetramer-sort yes amplicon-seq transitional T cells between effector and memory populations T1D T1D_2 chip0420_705432 PBMC +4912 CASSYGPSGHASISREQYF TRBV6-2*01,TRBV6-3*01 TRBJ2-7*01 HLA-B*08:01 B2M MHCI QAKWRLQTL EBNA3A EBV PMID:34811538 tetramer-sort yes amplicon-seq effector memory T cells T1D T1D_3 chip0420_775807 PBMC +4916 CAVNPPVAGGGNKLTF TRAV8-1*01 TRAJ10*01 HLA-B*08:01 B2M MHCI RAKFKQLL BZLF1 EBV PMID:34811538 tetramer-sort yes amplicon-seq effector memory T cells T1D T1D_3 chip0420_226399 PBMC +4918 CSVGSRGTNEKLFF TRBV29-1*01 TRBJ1-4*01 HLA-A*02:01 B2M MHCI GLCTLVAML BLMF1 EBV PMID:34811538 tetramer-sort yes amplicon-seq effector memory T cells T1D T1D_1 chip0420_12811 PBMC +4920 CAVDGag?PRKPHL TRAV8-3*01 TRAJ42*01 HLA-A*02:01 B2M MHCI GILGFVFTL M1 InfluenzaA PMID:34811538 tetramer-sort yes amplicon-seq transitional T cells between effector and memory populations healthy healthy_1 chip0420_460766 PBMC +4922 CASSFGAGELFF TRBV19*01 TRBJ2-2*01 HLA-A*02:01 B2M MHCI GILGFVFTL M1 InfluenzaA PMID:34811538 tetramer-sort yes amplicon-seq transitional T cells between effector and memory populations T1D T1D_1 chip0420_676743 PBMC +4924 CASSPVSGSTYEQYF TRBV3-1*01 TRBJ2-7*01 HLA-A*02:01 B2M MHCI GLCTLVAML BLMF1 EBV PMID:34811538 tetramer-sort yes amplicon-seq effector memory T cells T1D T1D_1 chip0420_193218 PBMC +4925 CSVGSRGTNEKLFF TRBV29-1*01 TRBJ1-4*01 HLA-A*02:01 B2M MHCI GLCTLVAML BLMF1 EBV PMID:34811538 tetramer-sort yes amplicon-seq effector memory T cells T1D T1D_1 chip0420_140231 PBMC +4926 CASSQSPGGLAFF TRBV14*01 TRBJ1-1*01 HLA-A*02:01 B2M MHCI GLCTLVAML BLMF1 EBV PMID:34811538 tetramer-sort yes amplicon-seq effector T cells T1D T1D_2 chip0420_93075 PBMC +4927 CSVDQRTGQKKNYGYTF TRBV29-1*01 TRBJ1-2*01 HLA-A*02:01 B2M MHCI GLCTLVAML BLMF1 EBV PMID:34811538 tetramer-sort yes amplicon-seq effector memory T cells T1D T1D_2 chip0420_376268 PBMC +4930 CASSLNGDPQETQYF TRBV7-3*01 TRBJ2-5*01 HLA-A*02:01 B2M MHCI LLAGIGTVPI PGT HomoSapiens PMID:34811538 tetramer-sort yes amplicon-seq Naive T cells T1D T1D_1 chip0420_132975 PBMC +4931 CGTQENDSWGKLQF TRAV30*01 TRAJ24*01 CSVGTGGTNEKLFF TRBV29-1*01 TRBJ1-4*01 HLA-A*02:01 B2M MHCI AIIRILQQL VPR HIV-1 PMID:34811538 tetramer-sort yes amplicon-seq natural killer-like T cells T1D T1D_1 chip0420_170306 PBMC +4932 CASTAGLAGHEQYF TRBV6-1*01 TRBJ2-7*01 HLA-A*02:01 B2M MHCI ALAGIGILTV MART1 HomoSapiens PMID:34811538 tetramer-sort yes amplicon-seq Naive T cells T1D T1D_2 chip0420_873177 PBMC +4933 CSARGDREVSYNEQFF TRBV20-1*01 TRBJ2-1*01 HLA-A*02:01 B2M MHCI YVLDHLIVV BRLF1 EBV PMID:34811538 tetramer-sort yes amplicon-seq Naive T cells T1D T1D_1 chip0420_284524 PBMC +4934 CASSEGRVSPGEAFF TRBV2*01 TRBJ1-1*01 HLA-A*02:01 B2M MHCI GLCTLVAML BLMF1 EBV PMID:34811538 tetramer-sort yes amplicon-seq effector T cells T1D T1D_1 chip0420_659792 PBMC +4937 CASSYGSNTGELFF TRBV6-5*01 TRBJ2-2*01 HLA-A*02:01 B2M MHCI GILGFVFTL M1 InfluenzaA PMID:34811538 tetramer-sort yes amplicon-seq Naive T cells healthy healthy_2 chip0420_710173 PBMC +4942 CASSEAGGGYEQYF TRBV12-3*01,TRBV12-4*01 TRBJ2-7*01 HLA-A*02:01 B2M MHCI AAGIGILTV MART1 HomoSapiens PMID:34811538 tetramer-sort yes amplicon-seq effector T cells healthy healthy_1 chip0420_528856 PBMC +4946 CSADEQFF TRBV20-1*01 TRBJ2-1*01 HLA-A*02:01 B2M MHCI IQATVMIIV ZNT8 HomoSapiens PMID:34811538 tetramer-sort yes amplicon-seq Naive T cells healthy healthy_1 chip0420_145647 PBMC +4947 CAGAGSQRNLIF TRAV27*01 TRAJ42*01 HLA-A*02:01 B2M MHCI GILGFVFTL M1 InfluenzaA PMID:34811538 tetramer-sort yes amplicon-seq transitional T cells between effector and memory populations healthy healthy_1 chip0420_674917 PBMC +4951 CASSSDRGRPWEQYF TRBV7-9*01 TRBJ2-7*01 HLA-A*02:01 B2M MHCI KMYAFTLES ZNT8 HomoSapiens PMID:34811538 tetramer-sort yes amplicon-seq Naive T cells T1D T1D_1 chip0420_720775 PBMC +4956 CASSEDGMNTEAFF TRBV10-2*01 TRBJ1-1*01 HLA-A*02:01 B2M MHCI CLGGLLTMV LMP2A EBV PMID:34811538 tetramer-sort yes amplicon-seq effector memory T cells T1D T1D_2 chip0420_57891 PBMC +4958 CSASLAGVYEQYF TRBV20-1*01 TRBJ2-7*01 HLA-A*02:01 B2M MHCI LLAGIGTVPI PGT HomoSapiens PMID:34811538 tetramer-sort yes amplicon-seq Naive T cells T1D T1D_2 chip0420_677359 PBMC +4960 CASSSGLVAPGELFF TRBV2*01 TRBJ2-2*01 HLA-A*02:01 B2M MHCI GLCTLVAML BLMF1 EBV PMID:34811538 tetramer-sort yes amplicon-seq effector memory T cells T1D T1D_2 chip0420_756644 PBMC +4963 CAMSISNFGNEKLTF TRAV12-3*01 TRAJ48*01 CASRFPRDRSNTGELFF TRBV19*01 TRBJ2-2*01 HLA-A*02:01 B2M MHCI LLAGIGTVPI PGT HomoSapiens PMID:34811538 tetramer-sort yes amplicon-seq Naive T cells T1D T1D_1 chip0420_382682 PBMC +4964 CAVNALDKLIF TRAV8-1*01 TRAJ34*01 HLA-A*02:01 B2M MHCI YVLDHLIVV BRLF1 EBV PMID:34811538 tetramer-sort yes amplicon-seq effector memory T cells T1D T1D_1 chip0420_99459 PBMC +4966 CSVGSRGTNEKLFF TRBV29-1*01 TRBJ1-4*01 HLA-A*02:01 B2M MHCI GLCTLVAML BLMF1 EBV PMID:34811538 tetramer-sort yes amplicon-seq effector T cells T1D T1D_1 chip0420_423524 PBMC +4967 CAVNIANFGNEKLTF TRAV12-2*01 TRAJ48*01 CASSDMNTEAFV TRBV2*01 TRBJ1-1*01 HLA-A*02:01 B2M MHCI LLAGIGTVPI PGT HomoSapiens PMID:34811538 tetramer-sort yes amplicon-seq Naive T cells healthy healthy_1 chip0420_141086 PBMC +4968 CASSFLGTGLNEQHF TRBV28*01 TRBJ2-7*01 HLA-A*02:01 B2M MHCI YLVALGINAV POL HCV PMID:34811538 tetramer-sort yes amplicon-seq transitional T cells between effector and memory populations T1D T1D_2 chip0420_639049 PBMC +4971 CASSIRAAYEQYF TRBV19*01 TRBJ2-7*01 HLA-A*02:01 B2M MHCI GILGFVFTL M1 InfluenzaA PMID:34811538 tetramer-sort yes amplicon-seq transitional T cells between effector and memory populations healthy healthy_1 chip0420_471806 PBMC +4973 CSVGSRGTNEKLFF TRBV29-1*01 TRBJ1-4*01 HLA-A*02:01 B2M MHCI GLCTLVAML BLMF1 EBV PMID:34811538 tetramer-sort yes amplicon-seq effector memory T cells T1D T1D_1 chip0420_608801 PBMC +4976 CAVDQGGKLIF TRAV12-2*01 TRAJ23*01 HLA-A*02:01 B2M MHCI LLAGIGTVPI PGT HomoSapiens PMID:34811538 tetramer-sort yes amplicon-seq Naive T cells healthy healthy_1 chip0420_405452 PBMC +4978 CVVNGGDSSYKLIF TRAV12-1*01 TRAJ12*01 CASSSGQVLPNEQFF TRBV2*01 TRBJ2-1*01 HLA-A*02:01 B2M MHCI GLCTLVAML BLMF1 EBV PMID:34811538 tetramer-sort yes amplicon-seq effector memory T cells T1D T1D_1 chip0420_72757 PBMC +4980 CAGAGCPGNLIF TRAV27*01 TRAJ42*01 HLA-A*02:01 B2M MHCI GILGFVFTL M1 InfluenzaA PMID:34811538 tetramer-sort yes amplicon-seq transitional T cells between effector and memory populations healthy healthy_1 chip0420_323923 PBMC +4981 SAVTAtt?GNAVRS TRAV8-4*01 TRAJ43*01 CSVGSRGTKEKLFF TRBV29-1*01 TRBJ1-4*01 HLA-A*02:01 B2M MHCI GLCTLVAML BLMF1 EBV PMID:34811538 tetramer-sort yes amplicon-seq effector T cells T1D T1D_1 chip0420_302827 PBMC +4982 CASSAGQGLPYEQYF TRBV5-1*01 TRBJ2-7*01 HLA-A*02:01 B2M MHCI GILGFVFTL M1 InfluenzaA PMID:34811538 tetramer-sort yes amplicon-seq transitional T cells between effector and memory populations healthy healthy_1 chip0420_33138 PBMC +4984 CAVSDTG??cRTYKYIF TRAV8-6*01 TRAJ40*01 HLA-A*02:01 B2M MHCI YVLDHLIVV BRLF1 EBV PMID:34811538 tetramer-sort yes amplicon-seq effector memory T cells T1D T1D_1 chip0420_711132 PBMC +4985 CAPGYLGc?tGRSHLTF TRAV17*01 TRAJ28*01 HLA-A*02:01 B2M MHCI GILGFVFTL M1 InfluenzaA PMID:34811538 tetramer-sort yes amplicon-seq transitional T cells between effector and memory populations healthy healthy_1 chip0420_705357 PBMC +4986 CASSPLGTGLETQYF TRBV28*01 TRBJ2-5*01 HLA-A*02:01 B2M MHCI LLAGIGTVPI PGT HomoSapiens PMID:34811538 tetramer-sort yes amplicon-seq Naive T cells T1D T1D_1 chip0420_239525 PBMC +4987 CAVSDTG??cRTYKYIL TRAV8-6*01 TRAJ40*01 CASSPDQTSSYNEQFF TRBV27*01 TRBJ2-1*01 HLA-A*02:01 B2M MHCI YVLDHLIVV BRLF1 EBV PMID:34811538 tetramer-sort yes amplicon-seq effector memory T cells T1D T1D_1 chip0420_362142 PBMC +4988 CASSSLAGGIDEQYF TRBV7-2*01 TRBJ2-7*01 HLA-A*02:01 B2M MHCI CLGGLLTMV LMP2A EBV PMID:34811538 tetramer-sort yes amplicon-seq Naive T cells healthy healthy_1 chip0420_429577 PBMC +4990 CVVNGEDSSYKLIF TRAV12-1*01 TRAJ12*01 HLA-A*02:01 B2M MHCI GLCTLVAML BLMF1 EBV PMID:34811538 tetramer-sort yes amplicon-seq effector memory T cells T1D T1D_1 chip0420_261156 PBMC +4991 CASSARSSYEQYF TRBV19*01 TRBJ2-7*01 HLA-A*02:01 B2M MHCI GILGFVFTL M1 InfluenzaA PMID:34811538 tetramer-sort yes amplicon-seq central memory T cells healthy healthy_2 chip0420_245363 PBMC +4992 CANSSGQVLPNEQFF TRBV2*01 TRBJ2-1*01 HLA-A*02:01 B2M MHCI GLCTLVAML BLMF1 EBV PMID:34811538 tetramer-sort yes amplicon-seq effector memory T cells T1D T1D_1 chip0420_696029 PBMC +4998 CAMMGL*??cSTGRLIF TRAV14/DV4*01 TRAJ37*01 HLA-A*02:01 B2M MHCI LNIDLLWSV IGRP HomoSapiens PMID:34811538 tetramer-sort yes amplicon-seq Naive T cells T1D T1D_1 chip0420_47394 PBMC +4999 CAVKDTDKLIF TRAV8-1*01 TRAJ34*01 HLA-A*02:01 B2M MHCI YVLDHLIVV BRLF1 EBV PMID:34811538 tetramer-sort yes amplicon-seq central memory T cells T1D T1D_1 chip0420_756944 PBMC +5001 CASSPVSGSTYEQYF TRBV3-1*01 TRBJ2-7*01 HLA-A*02:01 B2M MHCI GLCTLVAML BLMF1 EBV PMID:34811538 tetramer-sort yes amplicon-seq effector memory T cells T1D T1D_1 chip0420_178421 PBMC +5004 CSASYGNTEAFF TRBV20-1*01 TRBJ1-1*01 HLA-A*02:01 B2M MHCI KIVALGINAV POL HCV PMID:34811538 tetramer-sort yes amplicon-seq natural killer-like T cells healthy healthy_1 chip0420_113689 PBMC +5005 CASIAVAGTEAFF TRBV28*01 TRBJ1-1*01 HLA-A*02:01 B2M MHCI YVLDHLIVV BRLF1 EBV PMID:34811538 tetramer-sort yes amplicon-seq Naive T cells healthy healthy_1 chip0420_602987 PBMC +5006 CASRAGAGATQYF TRBV10-2*01 TRBJ2-3*01 HLA-A*02:01 B2M MHCI GLCTLVAML BLMF1 EBV PMID:34811538 tetramer-sort yes amplicon-seq effector memory T cells T1D T1D_2 chip0420_366185 PBMC +5007 CASSLGVWGHGAEAFF TRBV7-2*01 TRBJ1-1*01 HLA-A*02:01 B2M MHCI LLPPLLEHL PTPRN HomoSapiens PMID:34811538 tetramer-sort yes amplicon-seq Naive T cells healthy healthy_1 chip0420_278927 PBMC +5008 CAMSSSHFGSETLPF TRAV12-3*01 TRAJ48*01 HLA-A*02:01 B2M MHCI LLAGIGTVPI PGT HomoSapiens PMID:34811538 tetramer-sort yes amplicon-seq Naive T cells healthy healthy_1 chip0420_325950 PBMC +5009 LCQ*YDcg??ggVYEQYF TRBV19*01 TRBJ2-7*01 HLA-A*02:01 B2M MHCI GILGFVFTL M1 InfluenzaA PMID:34811538 tetramer-sort yes amplicon-seq transitional T cells between effector and memory populations T1D T1D_1 chip0420_120987 PBMC +5010 CAMSISNFGNEKLPF TRAV12-3*01 TRAJ48*01 CASSFEDRVTNYGYTF TRBV5-1*01 TRBJ1-2*01 HLA-A*02:01 B2M MHCI LLAGIGTVPI PGT HomoSapiens PMID:34811538 tetramer-sort yes amplicon-seq Naive T cells T1D T1D_1 chip0420_725272 PBMC +5011 CVVSDGSGGGADGLAF TRAV8-2*01 TRAJ45*01 HLA-A*02:01 B2M MHCI GILGFVFTL M1 InfluenzaA PMID:34811538 tetramer-sort yes amplicon-seq transitional T cells between effector and memory populations T1D T1D_1 chip0420_540377 PBMC +5013 CGTEEPNDHKLSF TRAV30*01 TRAJ20*01 HLA-A*02:01 B2M MHCI GLCTLVAML BLMF1 EBV PMID:34811538 tetramer-sort yes amplicon-seq effector memory T cells T1D T1D_1 chip0420_634178 PBMC +5014 CATQQGRDSQPQHF TRBV28*01 TRBJ1-5*01 HLA-A*02:01 B2M MHCI GLCTLVAML BLMF1 EBV PMID:34811538 tetramer-sort yes amplicon-seq effector T cells T1D T1D_1 chip0420_215657 PBMC +5018 CAASESYNTDKLIF TRAV29/DV5*01 TRAJ34*01 CASSIRSSDEQFL TRBV19*01 TRBJ2-1*01 HLA-A*02:01 B2M MHCI RLLPLLALL PREINS HomoSapiens PMID:34811538 tetramer-sort yes amplicon-seq Naive T cells healthy healthy_1 chip0420_86367 PBMC +5019 CASTYGGSSNEQFL TRBV9*01 TRBJ2-1*01 HLA-A*02:01 B2M MHCI VIYQYMDDL POL HIV-1 PMID:34811538 tetramer-sort yes amplicon-seq Naive T cells healthy healthy_1 chip0420_140734 PBMC +5022 CAGNSGSARQLTF TRAV12-2*01 TRAJ22*01 CASSASPGVGAFF TRBV6-1*01 TRBJ1-1*01 HLA-A*02:01 B2M MHCI LLSLFSLWL ZNT8 HomoSapiens PMID:34811538 tetramer-sort yes amplicon-seq Naive T cells healthy healthy_1 chip0420_4052 PBMC +5023 CAMREDNAGNMLTF TRAV14/DV4*01 TRAJ39*01 CASSIIDRTLGTDTQYF TRBV19*01 TRBJ2-3*01 HLA-A*02:01 B2M MHCI GILGFVFTL M1 InfluenzaA PMID:34811538 tetramer-sort yes amplicon-seq transitional T cells between effector and memory populations T1D T1D_1 chip0420_694229 PBMC +5027 CAVSRAGYALNF TRAV41*01 TRAJ41*01 HLA-A*02:01 B2M MHCI GILGFVFTL M1 InfluenzaA PMID:34811538 tetramer-sort yes amplicon-seq transitional T cells between effector and memory populations healthy healthy_1 chip0420_215436 PBMC +5028 CASSIRSSYEQYF TRBV19*01 TRBJ2-7*01 HLA-A*02:01 B2M MHCI GILGFVFTL M1 InfluenzaA PMID:34811538 tetramer-sort yes amplicon-seq transitional T cells between effector and memory populations healthy healthy_1 chip0420_156632 PBMC +5030 CAGGGSQGNLIF TRAV27*01 TRAJ42*01 HLA-A*02:01 B2M MHCI GILGFVFTL M1 InfluenzaA PMID:34811538 tetramer-sort yes amplicon-seq transitional T cells between effector and memory populations healthy healthy_1 chip0420_383221 PBMC +5031 CAVRLSLYSGAGSYQLTF TRAV8-3*01 TRAJ28*01 HLA-B*08:01 B2M MHCI QAKWRLQTL EBNA3A EBV PMID:34811538 tetramer-sort yes amplicon-seq effector memory T cells T1D T1D_3 chip0420_445605 PBMC +5034 CADLECW??cNHRKLIW TRAV36/DV7*01 TRAJ38*01 HLA-A*02:01 B2M MHCI GLCTLVAML BLMF1 EBV PMID:34811538 tetramer-sort yes amplicon-seq effector T cells T1D T1D_1 chip0420_63268 PBMC +5035 CASSQSPGGTQYF TRBV14*01 TRBJ2-3*01 HLA-A*02:01 B2M MHCI GLCTLVAML BLMF1 EBV PMID:34811538 tetramer-sort yes amplicon-seq effector T cells T1D T1D_1 chip0420_384682 PBMC +5036 CRAAQRTRca??aaKKNYGYTF TRBV29-1*01 TRBJ1-2*01 HLA-A*02:01 B2M MHCI GILGFVFTL M1 InfluenzaA PMID:34811538 tetramer-sort yes amplicon-seq transitional T cells between effector and memory populations T1D T1D_1 chip0420_875103 PBMC +5037 CASSLGAGGTVEQYF TRBV13*01 TRBJ2-7*01 HLA-A*02:01 B2M MHCI GILGFVFTL M1 InfluenzaA PMID:34811538 tetramer-sort yes amplicon-seq central memory T cells healthy healthy_1 chip0420_549076 PBMC +5038 CASRAGAGDTQYF TRBV10-2*01 TRBJ2-3*01 HLA-A*02:01 B2M MHCI GLCTLVAML BLMF1 EBV PMID:34811538 tetramer-sort yes amplicon-seq effector T cells T1D T1D_2 chip0420_492027 PBMC +5039 LCQ**Tgc??gcPDTQYF TRBV19*01 TRBJ2-3*01 HLA-A*02:01 B2M MHCI GILGFVFTL M1 InfluenzaA PMID:34811538 tetramer-sort yes amplicon-seq transitional T cells between effector and memory populations T1D T1D_1 chip0420_482234 PBMC +5042 CDSGGSARAGRRETQYF TRBV2*01 TRBJ2-5*01 HLA-A*02:01 B2M MHCI LLAGIGTVPI PGT HomoSapiens PMID:34811538 tetramer-sort yes amplicon-seq Naive T cells T1D T1D_1 chip0420_252380 PBMC +5044 CASSWTANTEAFF TRBV19*01 TRBJ1-1*01 HLA-A*01:01 B2M MHCI GSHLVEALY INS HomoSapiens PMID:34811538 tetramer-sort yes amplicon-seq Naive T cells T1D T1D_3 chip0420_227421 PBMC +5045 CASSGGAPQASEQFF TRBV4-1*01 TRBJ2-1*01 HLA-B*08:01 B2M MHCI RAKFKQLL BZLF1 EBV PMID:34811538 tetramer-sort yes amplicon-seq effector memory T cells T1D T1D_3 chip0420_182141 PBMC +5048 CAVGLIR??gVNRKLTF TRAV39*01 TRAJ56*01 CASSFgg??agGELFF TRBV19*01 TRBJ2-2*01 HLA-A*02:01 B2M MHCI GILGFVFTL M1 InfluenzaA PMID:34811538 tetramer-sort yes amplicon-seq transitional T cells between effector and memory populations T1D T1D_1 chip0420_668041 PBMC +5049 CGPEEPNDYKLSF TRAV30*01 TRAJ20*01 HLA-A*02:01 B2M MHCI GLCTLVAML BLMF1 EBV PMID:34811538 tetramer-sort yes amplicon-seq effector T cells T1D T1D_1 chip0420_744250 PBMC +5051 CGPAEPNDYKLSF TRAV30*01 TRAJ20*01 HLA-A*02:01 B2M MHCI GLCTLVAML BLMF1 EBV PMID:34811538 tetramer-sort yes amplicon-seq effector memory T cells T1D T1D_1 chip0420_437729 PBMC +5059 CAMQKGNAGNMLTF TRAV14/DV4*01 TRAJ39*01 CASSLSLAEIYEQYF TRBV11-1*01 TRBJ2-7*01 HLA-A*02:01 B2M MHCI GILGFVFTL M1 InfluenzaA PMID:34811538 tetramer-sort yes amplicon-seq transitional T cells between effector and memory populations healthy healthy_1 chip0420_802562 PBMC +5061 CAMREGVVEYGNKLVF TRAV14/DV4*01 TRAJ47*01 CASSFEAGELFF TRBV19*01 TRBJ2-2*01 HLA-A*02:01 B2M MHCI GILGFVFTL M1 InfluenzaA PMID:34811538 tetramer-sort yes amplicon-seq transitional T cells between effector and memory populations T1D T1D_1 chip0420_695727 PBMC +5062 CSVGSRGTNEKLFF TRBV29-1*01 TRBJ1-4*01 HLA-A*02:01 B2M MHCI GLCTLVAML BLMF1 EBV PMID:34811538 tetramer-sort yes amplicon-seq effector memory T cells T1D T1D_1 chip0420_662873 PBMC +5063 CAFMTNAGGTSYEKLTF TRAV38-1*01 TRAJ52*01 HLA-A*02:01 B2M MHCI GILGFVFTL M1 InfluenzaA PMID:34811538 tetramer-sort yes amplicon-seq transitional T cells between effector and memory populations T1D T1D_1 chip0420_765540 PBMC +5064 CAIWAGGGRNEQFF TRBV6-2*01,TRBV6-3*01 TRBJ2-1*01 HLA-A*02:01 B2M MHCI KMYAFTLES ZNT8 HomoSapiens PMID:34811538 tetramer-sort yes amplicon-seq Naive T cells healthy healthy_1 chip0420_360460 PBMC +5065 CASSLVGDTYEQYF TRBV5-1*01 TRBJ2-7*01 HLA-A*02:01 B2M MHCI GILGFVFTL M1 InfluenzaA PMID:34811538 tetramer-sort yes amplicon-seq transitional T cells between effector and memory populations healthy healthy_1 chip0420_606691 PBMC +5066 CSVGTGGTNEKLFF TRBV29-1*01 TRBJ1-4*01 HLA-A*02:01 B2M MHCI GLCTLVAML BLMF1 EBV PMID:34811538 tetramer-sort yes amplicon-seq effector memory T cells T1D T1D_2 chip0420_482743 PBMC +5067 CASSIRSAYEQYF TRBV19*01 TRBJ2-7*01 HLA-A*02:01 B2M MHCI GILGFVFTL M1 InfluenzaA PMID:34811538 tetramer-sort yes amplicon-seq transitional T cells between effector and memory populations T1D T1D_1 chip0420_617954 PBMC +5068 CASSTGQLSNTGELFF TRBV9*01 TRBJ2-2*01 HLA-A*02:01 B2M MHCI GLCTLVAML BLMF1 EBV PMID:34811538 tetramer-sort yes amplicon-seq effector T cells T1D T1D_1 chip0420_365036 PBMC +5071 CAPV*GAc?aGFQKLVF TRAV25*01,TRAV19*01 TRAJ8*01 CSAPAPPGQPQHF TRBV20-1*01 TRBJ1-5*01 HLA-A*02:01 B2M MHCI YVLDHLIVV BRLF1 EBV PMID:34811538 tetramer-sort yes amplicon-seq transitional T cells between effector and memory populations healthy healthy_1 chip0420_679553 PBMC +5073 CAMSASNFGNEKLTF TRAV12-3*01 TRAJ48*01 CASSFVLGLPGEGYTGELFF TRBV7-8*01 TRBJ2-2*01 HLA-A*02:01 B2M MHCI LLAGIGTVPI PGT HomoSapiens PMID:34811538 tetramer-sort yes amplicon-seq Naive T cells healthy healthy_1 chip0420_490018 PBMC +5074 CASSLFTAEVTQYF TRBV28*01 TRBJ2-3*01 HLA-A*02:01 B2M MHCI LLAGIGTVPI PGT HomoSapiens PMID:34811538 tetramer-sort yes amplicon-seq Naive T cells T1D T1D_1 chip0420_768718 PBMC +5075 CASSLHSALSYEQYF TRBV7-8*01 TRBJ2-7*01 HLA-A*02:01 B2M MHCI ALAGIGILTV MART1 HomoSapiens PMID:34811538 tetramer-sort yes amplicon-seq Naive T cells T1D T1D_1 chip0420_111472 PBMC +5076 CAVKDTDKLIF TRAV8-1*01 TRAJ34*01 HLA-A*02:01 B2M MHCI YVLDHLIVV BRLF1 EBV PMID:34811538 tetramer-sort yes amplicon-seq effector T cells T1D T1D_2 chip0420_855301 PBMC +5079 CSARDGTGNGYTF TRBV20-1*01 TRBJ1-2*01 HLA-A*02:01 B2M MHCI GLCTLVAML BLMF1 EBV PMID:34811538 tetramer-sort yes amplicon-seq effector T cells T1D T1D_1 chip0420_865274 PBMC +5080 CASSTRSSYEQYF TRBV19*01 TRBJ2-7*01 HLA-A*02:01 B2M MHCI GILGFVFTL M1 InfluenzaA PMID:34811538 tetramer-sort yes amplicon-seq transitional T cells between effector and memory populations healthy healthy_1 chip0420_532887 PBMC +5081 CASSIRSSYEQYF TRBV19*01 TRBJ2-7*01 HLA-A*02:01 B2M MHCI GILGFVFTL M1 InfluenzaA PMID:34811538 tetramer-sort yes amplicon-seq transitional T cells between effector and memory populations healthy healthy_1 chip0420_516700 PBMC +5085 CAVVRNca??gtGSRLSF TRAV41*01 TRAJ10*01,TRAJ39*01 CASSTRSSYEQYF TRBV19*01 TRBJ2-7*01 HLA-A*02:01 B2M MHCI GILGFVFTL M1 InfluenzaA PMID:34811538 tetramer-sort yes amplicon-seq transitional T cells between effector and memory populations healthy healthy_1 chip0420_151638 PBMC +5086 LCQ*FW??gAYGYTF TRBV19*01 TRBJ1-2*01 HLA-A*02:01 B2M MHCI GILGFVFTL M1 InfluenzaA PMID:34811538 tetramer-sort yes amplicon-seq transitional T cells between effector and memory populations T1D T1D_1 chip0420_331359 PBMC +5088 CAISEGTLGAQPQHF TRBV10-3*01 TRBJ1-5*01 HLA-A*02:01 B2M MHCI LLAGIGTVPI PGT HomoSapiens PMID:34811538 tetramer-sort yes amplicon-seq Naive T cells T1D T1D_1 chip0420_252022 PBMC +5089 CSVGTGgg?H*RKTVF TRBV29-1*01 TRBJ1-4*01 HLA-A*02:01 B2M MHCI GLCTLVAML BLMF1 EBV PMID:34811538 tetramer-sort yes amplicon-seq effector T cells T1D T1D_2 chip0420_820882 PBMC +5091 CALSDQGAQKLVF TRAV19*01 TRAJ54*01 HLA-A*02:01 B2M MHCI GILGFVFTL M1 InfluenzaA PMID:34811538 tetramer-sort yes amplicon-seq transitional T cells between effector and memory populations healthy healthy_1 chip0420_762211 PBMC +5092 CASSIRSSYEQYF TRBV19*01 TRBJ2-7*01 HLA-A*02:01 B2M MHCI GILGFVFTL M1 InfluenzaA PMID:34811538 tetramer-sort yes amplicon-seq transitional T cells between effector and memory populations healthy healthy_1 chip0420_65727 PBMC +5094 CAVKGYDKIIF TRAV8-1*01 TRAJ30*01 CASSPDQTSSYNEQFF TRBV27*01 TRBJ2-1*01 HLA-A*02:01 B2M MHCI YVLDHLIVV BRLF1 EBV PMID:34811538 tetramer-sort yes amplicon-seq effector T cells T1D T1D_1 chip0420_449868 PBMC +5096 CAMREGGNFNKFYF TRAV14/DV4*01 TRAJ21*01 CSASRALDQPQHF TRBV20-1*01 TRBJ1-5*01 HLA-A*02:01 B2M MHCI YVLDHLIVV BRLF1 EBV PMID:34811538 tetramer-sort yes amplicon-seq effector T cells healthy healthy_1 chip0420_260070 PBMC +5097 CASSQSRGSLWDTQYF TRBV4-3*01 TRBJ2-3*01 HLA-A*02:01 B2M MHCI YVLDHLIVV BRLF1 EBV PMID:34811538 tetramer-sort yes amplicon-seq effector T cells T1D T1D_2 chip0420_116485 PBMC +5099 CVVNGRDSSYKLIF TRAV12-1*01 TRAJ12*01 HLA-A*02:01 B2M MHCI GLCTLVAML BLMF1 EBV PMID:34811538 tetramer-sort yes amplicon-seq effector T cells T1D T1D_2 chip0420_106268 PBMC +5100 CASSPPGGYEQYF TRBV19*01 TRBJ2-7*01 HLA-A*02:01 B2M MHCI RGPGRAFVTI GP160 HIV-1 PMID:34811538 tetramer-sort yes amplicon-seq Naive T cells T1D T1D_1 chip0420_627111 PBMC +5102 CAGDTEYGNKLVF TRAV27*01 TRAJ47*01 HLA-A*02:01 B2M MHCI LLAGIGTVPI PGT HomoSapiens PMID:34811538 tetramer-sort yes amplicon-seq Naive T cells T1D T1D_1 chip0420_277732 PBMC +5104 CASSQFLNTEAFF TRBV14*01 TRBJ1-1*01 HLA-A*02:01 B2M MHCI IQATVMIIV ZNT8 HomoSapiens PMID:34811538 tetramer-sort yes amplicon-seq Naive T cells T1D T1D_1 chip0420_153683 PBMC +5105 CASSPGDARGEQYF TRBV5-6*01 TRBJ2-7*01 HLA-A*02:01 B2M MHCI YLLEMLWRL LMP1 EBV PMID:34811538 tetramer-sort yes amplicon-seq central memory T cells T1D T1D_1 chip0420_110431 PBMC +5106 CAWPSP??cADKVFF TRAV35*01 TRAJ37*01 HLA-A*02:01 B2M MHCI LLAGIGTVPI PGT HomoSapiens PMID:34811538 tetramer-sort yes amplicon-seq Naive T cells T1D T1D_2 chip0420_24162 PBMC +5107 CATQQGRDSQPQHF TRBV28*01 TRBJ1-5*01 HLA-A*02:01 B2M MHCI GLCTLVAML BLMF1 EBV PMID:34811538 tetramer-sort yes amplicon-seq effector T cells T1D T1D_1 chip0420_748087 PBMC +5109 CAYRSPPSSEKLVF TRAV38-2/DV8*01 TRAJ57*01 CASSGGRVHPGTQYF TRBV2*01 TRBJ2-5*01 HLA-A*02:01 B2M MHCI GLCTLVAML BLMF1 EBV PMID:34811538 tetramer-sort yes amplicon-seq effector memory T cells T1D T1D_1 chip0420_520392 PBMC +5111 CTLRART??aGADGLAF TRAV19*01 TRAJ45*01 HLA-A*02:01 B2M MHCI SLNYSGVKEL ZNT8 HomoSapiens PMID:34811538 tetramer-sort yes amplicon-seq Naive T cells healthy healthy_1 chip0420_29323 PBMC +5124 CSADGLAGGAPFNEQFF TRBV20-1*01 TRBJ2-1*01 HLA-A*01:01 B2M MHCI HSNLNDATY NP InfluenzaA PMID:34811538 tetramer-sort yes amplicon-seq Naive T cells tet_neg chip0420_592540 PBMC +5127 CIDIIQGAQKLAF TRAV26-1*01 TRAJ54*01 HLA-A*02:01 B2M MHCI GILGFVFTL M1 InfluenzaA PMID:34811538 tetramer-sort yes amplicon-seq transitional T cells between effector and memory populations T1D T1D_1 chip0420_757922 PBMC +5128 CSVTGSFTSGNTIYF TRBV29-1*01 TRBJ1-3*01 HLA-A*02:01 B2M MHCI LLFNILGGWV NS4B HCV PMID:34811538 tetramer-sort yes amplicon-seq Naive T cells healthy healthy_1 chip0420_621310 PBMC +5129 CSAPAPPGQPQHF TRBV20-1*01 TRBJ1-5*01 HLA-A*02:01 B2M MHCI YVLDHLIVV BRLF1 EBV PMID:34811538 tetramer-sort yes amplicon-seq transitional T cells between effector and memory populations healthy healthy_1 chip0420_224480 PBMC +5130 CAMREGASYDKVIF TRAV14/DV4*01 TRAJ50*01 HLA-A*02:01 B2M MHCI KMYAFTLES ZNT8 HomoSapiens PMID:34811538 tetramer-sort yes amplicon-seq Naive T cells T1D T1D_2 chip0420_832991 PBMC +5131 CAVKRRAAGNKLTF TRAV12-2*01 TRAJ17*01 CASTDTPRLINTGALFF TRBV28*01 TRBJ2-2*01 HLA-A*02:01 B2M MHCI YVLDHLIVV BRLF1 EBV PMID:34811538 tetramer-sort yes amplicon-seq effector memory T cells T1D T1D_2 chip0420_112419 PBMC +5138 CADLVCW??cYCRSLIR TRAV36/DV7*01 TRAJ38*01 CSVAGQGAYEQYF TRBV29-1*01 TRBJ2-7*01 HLA-A*02:01 B2M MHCI GLCTLVAML BLMF1 EBV PMID:34811538 tetramer-sort yes amplicon-seq effector memory T cells T1D T1D_1 chip0420_537996 PBMC +5140 CATSDWLTNEQYF TRBV24-1*01 TRBJ2-7*01 HLA-A*02:01 B2M MHCI YVLDHLIVV BRLF1 EBV PMID:34811538 tetramer-sort yes amplicon-seq effector memory T cells T1D T1D_1 chip0420_512198 PBMC +5141 CASTLENTEAFF TRBV2*01 TRBJ1-1*01 HLA-A*02:01 B2M MHCI RGPGRAFVTI GP160 HIV-1 PMID:34811538 tetramer-sort yes amplicon-seq Naive T cells T1D T1D_1 chip0420_386905 PBMC +5145 CASSTRSSYEQYF TRBV19*01 TRBJ2-7*01 HLA-A*02:01 B2M MHCI GILGFVFTL M1 InfluenzaA PMID:34811538 tetramer-sort yes amplicon-seq transitional T cells between effector and memory populations healthy healthy_1 chip0420_321402 PBMC +5147 CSARDGTGNGYTF TRBV20-1*01 TRBJ1-2*01 HLA-A*02:01 B2M MHCI GLCTLVAML BLMF1 EBV PMID:34811538 tetramer-sort yes amplicon-seq effector memory T cells T1D T1D_1 chip0420_65913 PBMC +5156 CASCLVGTSGSYSTDTQYL TRBV13*01 TRBJ2-3*01 HLA-A*02:01 B2M MHCI YVLDHLIVV BRLF1 EBV PMID:34811538 tetramer-sort yes amplicon-seq effector T cells T1D T1D_1 chip0420_474767 PBMC +5158 CASSPHLGAAAEQYF TRBV19*01 TRBJ2-7*01 HLA-A*02:01 B2M MHCI YVLDHLIVV BRLF1 EBV PMID:34811538 tetramer-sort yes amplicon-seq effector memory T cells T1D T1D_1 chip0420_31407 PBMC +5163 CSARDGTGNGYTF TRBV20-1*01 TRBJ1-2*01 HLA-A*02:01 B2M MHCI GLCTLVAML BLMF1 EBV PMID:34811538 tetramer-sort yes amplicon-seq effector memory T cells T1D T1D_1 chip0420_273892 PBMC +5164 CASSPVSGSTYEQYF TRBV3-1*01 TRBJ2-7*01 HLA-A*02:01 B2M MHCI GLCTLVAML BLMF1 EBV PMID:34811538 tetramer-sort yes amplicon-seq effector T cells T1D T1D_1 chip0420_291127 PBMC +5166 CASTHGGVIPDTQYF TRBV2*01 TRBJ2-3*01 HLA-A*02:01 B2M MHCI GLCTLVAML BLMF1 EBV PMID:34811538 tetramer-sort yes amplicon-seq effector T cells T1D T1D_1 chip0420_214569 PBMC +5167 CASTRRTEAFF TRBV28*01 TRBJ1-1*01 HLA-A*02:01 B2M MHCI LLAGIGTVPI PGT HomoSapiens PMID:34811538 tetramer-sort yes amplicon-seq Naive T cells healthy healthy_1 chip0420_375056 PBMC +5168 CAMSGGPDETSGSRLTF TRAV12-3*01 TRAJ10*01 HLA-A*02:01 B2M MHCI GILGFVFTL M1 InfluenzaA PMID:34811538 tetramer-sort yes amplicon-seq transitional T cells between effector and memory populations healthy healthy_1 chip0420_335619 PBMC +5172 CASSHLLGTGFGYTF TRBV3-1*01 TRBJ1-2*01 HLA-A*02:01 B2M MHCI YVLDHLIVV BRLF1 EBV PMID:34811538 tetramer-sort yes amplicon-seq effector T cells T1D T1D_1 chip0420_705304 PBMC +5173 CASSLQGGNYGYTF TRBV6-5*01 TRBJ1-2*01 HLA-A*02:01 B2M MHCI FLYALALLL LMP2 EBV PMID:34811538 tetramer-sort yes amplicon-seq central memory T cells T1D T1D_2 chip0420_674425 PBMC +5175 CAASTGD??cSYDQVIL TRAV13-1*01 TRAJ50*01 CARSMRSSYEQYF TRBV19*01 TRBJ2-7*01 HLA-A*02:01 B2M MHCI GILGFVFTL M1 InfluenzaA PMID:34811538 tetramer-sort yes amplicon-seq transitional T cells between effector and memory populations healthy healthy_1 chip0420_548070 PBMC +5177 CAVSNQAGTALIF TRAV12-2*01 TRAJ15*01 HLA-A*02:01 B2M MHCI ALGIGILTV MART1 HomoSapiens PMID:34811538 tetramer-sort yes amplicon-seq Naive T cells T1D T1D_2 chip0420_532880 PBMC +5178 CASSIGYYGYTF TRBV19*01 TRBJ1-2*01 HLA-A*02:01 B2M MHCI GILGFVFTL M1 InfluenzaA PMID:34811538 tetramer-sort yes amplicon-seq effector T cells T1D T1D_1 chip0420_47566 PBMC +5183 CASSPHLGVAAEQYF TRBV19*01 TRBJ2-7*01 HLA-A*02:01 B2M MHCI YVLDHLIVV BRLF1 EBV PMID:34811538 tetramer-sort yes amplicon-seq effector T cells T1D T1D_1 chip0420_697745 PBMC +5186 CATQQGRDNQPQHF TRBV28*01 TRBJ1-5*01 HLA-A*02:01 B2M MHCI GLCTLVAML BLMF1 EBV PMID:34811538 tetramer-sort yes amplicon-seq effector memory T cells T1D T1D_1 chip0420_62900 PBMC +5188 CSACAPGAGVCEQYF TRBV20-1*01 TRBJ2-7*01 HLA-A*02:01 B2M MHCI LLAGIGTVPI PGT HomoSapiens PMID:34811538 tetramer-sort yes amplicon-seq Naive T cells T1D T1D_1 chip0420_819062 PBMC +5190 CACGGSQGNLIF TRAV27*01 TRAJ42*01 HLA-A*02:01 B2M MHCI GILGFVFTL M1 InfluenzaA PMID:34811538 tetramer-sort yes amplicon-seq transitional T cells between effector and memory populations healthy healthy_1 chip0420_94367 PBMC +5193 CASSFGQGSDTQYF TRBV27*01 TRBJ2-3*01 HLA-A*02:01 B2M MHCI GILGFVFTL M1 InfluenzaA PMID:34811538 tetramer-sort yes amplicon-seq transitional T cells between effector and memory populations healthy healthy_2 chip0420_132418 PBMC +5194 CASINRAGETQYF TRBV10-2*01 TRBJ2-5*01 HLA-A*02:01 B2M MHCI LLAGIGTVPI PGT HomoSapiens PMID:34811538 tetramer-sort yes amplicon-seq Naive T cells T1D T1D_1 chip0420_752485 PBMC +5197 CSVGSRGTNEKLFF TRBV29-1*01 TRBJ1-4*01 HLA-A*02:01 B2M MHCI GLCTLVAML BLMF1 EBV PMID:34811538 tetramer-sort yes amplicon-seq effector T cells T1D T1D_1 chip0420_793316 PBMC +5206 CASSVQGGNYGYTF TRBV6-1*01 TRBJ1-2*01 HLA-A*02:01 B2M MHCI FLYALALLL LMP2 EBV PMID:34811538 tetramer-sort yes amplicon-seq effector memory T cells T1D T1D_1 chip0420_201300 PBMC +5207 CASSGGAVAPSEQFF TRBV2*01 TRBJ2-1*01 HLA-A*02:01 B2M MHCI GLCTLVAML BLMF1 EBV PMID:34811538 tetramer-sort yes amplicon-seq effector memory T cells T1D T1D_2 chip0420_316724 PBMC +5208 CAASLRGac?SSASKIIF TRAV13-1*01 TRAJ3*01 CASSPGDARGEQYF TRBV5-6*01 TRBJ2-7*01 HLA-A*02:01 B2M MHCI YLLEMLWRL LMP1 EBV PMID:34811538 tetramer-sort yes amplicon-seq central memory T cells T1D T1D_1 chip0420_622988 PBMC +5210 CASSMGAHGYTF TRBV19*01 TRBJ1-2*01 HLA-A*02:01 B2M MHCI GILGFVFTL M1 InfluenzaA PMID:34811538 tetramer-sort yes amplicon-seq transitional T cells between effector and memory populations T1D T1D_1 chip0420_222689 PBMC +5211 CALRDMEYGNKLVF TRAV16*01 TRAJ47*01 HLA-B*08:01 B2M MHCI RAKFKQLL BZLF1 EBV PMID:34811538 tetramer-sort yes amplicon-seq effector memory T cells T1D T1D_3 chip0420_98709 PBMC +5216 CAWGWGGGRASNEQYF TRBV30*01 TRBJ2-7*01 HLA-A*02:01 B2M MHCI LAVDGVLSV ZNT8 HomoSapiens PMID:34811538 tetramer-sort yes amplicon-seq Naive T cells T1D T1D_1 chip0420_813691 PBMC +5218 CAPQANTGKLIF TRAV12-2*01 TRAJ37*01 CVSSIRSSYEQYF TRBV19*01 TRBJ2-7*01 HLA-A*02:01 B2M MHCI GILGFVFTL M1 InfluenzaA PMID:34811538 tetramer-sort yes amplicon-seq transitional T cells between effector and memory populations healthy healthy_1 chip0420_510014 PBMC +5220 CATSNLDSNYGYTF TRBV24-1*01 TRBJ1-2*01 HLA-A*02:01 B2M MHCI CINGVCWTV NS3 HCV PMID:34811538 tetramer-sort yes amplicon-seq Naive T cells T1D T1D_1 chip0420_270103 PBMC +5221 CAFMINAGGTSYGKLTF TRAV38-1*01 TRAJ52*01 HLA-A*02:01 B2M MHCI GILGFVFTL M1 InfluenzaA PMID:34811538 tetramer-sort yes amplicon-seq transitional T cells between effector and memory populations healthy healthy_1 chip0420_663178 PBMC +5222 CATLPIN??cSGTRFTF TRAV27*01 TRAJ48*01,TRAJ10*01 HLA-A*01:01 B2M MHCI HSNLNDATY NP InfluenzaA PMID:34811538 tetramer-sort yes amplicon-seq Naive T cells T1D T1D_3 chip0420_172313 PBMC +5224 CILGDWSc?gGWRARAF TRAV26-2*01 TRAJ5*01 HLA-A*02:01 B2M MHCI GILGFVFTL M1 InfluenzaA PMID:34811538 tetramer-sort yes amplicon-seq transitional T cells between effector and memory populations healthy healthy_1 chip0420_467843 PBMC +5225 CASSIRSAYEQYF TRBV19*01 TRBJ2-7*01 HLA-A*02:01 B2M MHCI GILGFVFTL M1 InfluenzaA PMID:34811538 tetramer-sort yes amplicon-seq transitional T cells between effector and memory populations healthy healthy_1 chip0420_633811 PBMC +5226 CASSIRSSYEQYF TRBV19*01 TRBJ2-7*01 HLA-A*02:01 B2M MHCI GILGFVFTL M1 InfluenzaA PMID:34811538 tetramer-sort yes amplicon-seq transitional T cells between effector and memory populations healthy healthy_1 chip0420_735302 PBMC +5227 SASRFLGTGLNEQYF TRBV28*01 TRBJ2-7*01 HLA-A*02:01 B2M MHCI FLYALALLL LMP2 EBV PMID:34811538 tetramer-sort yes amplicon-seq transitional T cells between effector and memory populations T1D T1D_1 chip0420_206247 PBMC +5228 CASSVRGGNYGYTF TRBV6-1*01 TRBJ1-2*01 HLA-A*02:01 B2M MHCI FLYALALLL LMP2 EBV PMID:34811538 tetramer-sort yes amplicon-seq effector T cells T1D T1D_1 chip0420_864866 PBMC +5230 RAVPQGGFc?tGGSHPLLF TRAV20*01 TRAJ4*01 HLA-A*02:01 B2M MHCI GILGFVFTL M1 InfluenzaA PMID:34811538 tetramer-sort yes amplicon-seq effector memory T cells T1D T1D_1 chip0420_393727 PBMC +5231 CASRAGAGDTQYF TRBV10-2*01 TRBJ2-3*01 HLA-A*02:01 B2M MHCI GLCTLVAML BLMF1 EBV PMID:34811538 tetramer-sort yes amplicon-seq effector memory T cells T1D T1D_2 chip0420_871355 PBMC +5234 CASSLHLRQDEQPQHF TRBV28*01 TRBJ1-5*01 HLA-B*08:01 B2M MHCI QAKWRLQTL EBNA3A EBV PMID:34811538 tetramer-sort yes amplicon-seq effector memory T cells T1D T1D_3 chip0420_843550 PBMC +5235 CSVGGSFYGYTF TRBV29-1*01 TRBJ1-2*01 HLA-A*02:01 B2M MHCI GLCTLVAML BLMF1 EBV PMID:34811538 tetramer-sort yes amplicon-seq effector memory T cells T1D T1D_2 chip0420_793408 PBMC +5239 CASSFGTYDGYTF TRBV7-6*01 TRBJ1-2*01 HLA-A*02:01 B2M MHCI YLLEMLWRL LMP1 EBV PMID:34811538 tetramer-sort yes amplicon-seq Naive T cells T1D T1D_2 chip0420_473691 PBMC +5241 CSVGSRGTNEKLFF TRBV29-1*01 TRBJ1-4*01 HLA-A*02:01 B2M MHCI GLCTLVAML BLMF1 EBV PMID:34811538 tetramer-sort yes amplicon-seq effector memory T cells T1D T1D_1 chip0420_81451 PBMC +5242 CASSVDNGAEAFF TRBV9*01 TRBJ1-1*01 HLA-A*02:01 B2M MHCI LLAGIGTVPI PGT HomoSapiens PMID:34811538 tetramer-sort yes amplicon-seq Naive T cells healthy healthy_2 chip0420_784224 PBMC +5243 CAGETGTYKYIF TRAV29/DV5*01 TRAJ40*01 HLA-A*02:01 B2M MHCI ALWMRLLPL PREINS HomoSapiens PMID:34811538 tetramer-sort yes amplicon-seq Naive T cells healthy healthy_1 chip0420_755211 PBMC +5245 CASSINGGSRNGYTF TRBV19*01 TRBJ1-2*01 HLA-A*02:01 B2M MHCI GILGFVFTL M1 InfluenzaA PMID:34811538 tetramer-sort yes amplicon-seq transitional T cells between effector and memory populations healthy healthy_2 chip0420_335913 PBMC +5246 CGTQENDSWGKLQF TRAV30*01 TRAJ24*01 CASSVRAGETQYF TRBV19*01 TRBJ2-5*01 HLA-A*02:01 B2M MHCI GILGFVFTL M1 InfluenzaA PMID:34811538 tetramer-sort yes amplicon-seq transitional T cells between effector and memory populations T1D T1D_1 chip0420_262940 PBMC +5248 CASSIEGTSGYEQYF TRBV19*01 TRBJ2-7*01 HLA-A*02:01 B2M MHCI GILGFVFTL M1 InfluenzaA PMID:34811538 tetramer-sort yes amplicon-seq effector T cells T1D T1D_1 chip0420_835089 PBMC +5253 CAGAGHYGQNFVF TRAV27*01 TRAJ26*01 HLA-A*02:01 B2M MHCI SLSPLQAEL PTPRN HomoSapiens PMID:34811538 tetramer-sort yes amplicon-seq Naive T cells T1D T1D_2 chip0420_661111 PBMC +5254 CAASNAGNNRKLIW TRAV13-1*01 TRAJ38*01 CASTHGGVIPDTQYF TRBV2*01 TRBJ2-3*01 HLA-A*02:01 B2M MHCI GLCTLVAML BLMF1 EBV PMID:34811538 tetramer-sort yes amplicon-seq effector memory T cells T1D T1D_1 chip0420_82315 PBMC +5258 CASSYQGGAEYGYTF TRBV6-5*01 TRBJ1-2*01 HLA-A*02:01 B2M MHCI FLYALALLL LMP2 EBV PMID:34811538 tetramer-sort yes amplicon-seq effector memory T cells T1D T1D_2 chip0420_417303 PBMC +5262 CATGRVVga??gcSASKIIF TRAV17*01 TRAJ3*01 CASSAGQVAPGEQYF TRBV2*01 TRBJ2-7*01 HLA-A*02:01 B2M MHCI GLCTLVAML BLMF1 EBV PMID:34811538 tetramer-sort yes amplicon-seq effector memory T cells T1D T1D_2 chip0420_336057 PBMC +5263 CASSFKNAEAFF TRBV27*01 TRBJ1-1*01 HLA-A*02:01 B2M MHCI GILGFVFTL M1 InfluenzaA PMID:34811538 tetramer-sort yes amplicon-seq transitional T cells between effector and memory populations healthy healthy_1 chip0420_623351 PBMC +5264 CASLTPGASKIIF TRAV8-6*01 TRAJ3*01 CASSSGLVAPGELFF TRBV2*01 TRBJ2-2*01 HLA-A*02:01 B2M MHCI GLCTLVAML BLMF1 EBV PMID:34811538 tetramer-sort yes amplicon-seq effector memory T cells T1D T1D_2 chip0420_517824 PBMC +5271 CASSFSEGIQETQYF TRBV7-9*01 TRBJ2-5*01 HLA-A*02:01 B2M MHCI LLAGIGTVPI PGT HomoSapiens PMID:34811538 tetramer-sort yes amplicon-seq Naive T cells healthy healthy_1 chip0420_200457 PBMC +5272 CAGAAGR??aGADGLTF TRAV27*01 TRAJ45*01 FASSAGQGLPYEQYF TRBV5-1*01 TRBJ2-7*01 HLA-A*02:01 B2M MHCI GILGFVFTL M1 InfluenzaA PMID:34811538 tetramer-sort yes amplicon-seq transitional T cells between effector and memory populations healthy healthy_1 chip0420_823092 PBMC +5273 CASSESGIGRDTQYF TRBV9*01 TRBJ2-3*01 HLA-B*08:01 B2M MHCI YAYAKWKL ZNT8 HomoSapiens PMID:34811538 tetramer-sort yes amplicon-seq Naive T cells healthy healthy_2 chip0420_123230 PBMC +5275 CASSQNRDRRAQETQYF TRBV4-3*01 TRBJ2-5*01 HLA-A*02:01 B2M MHCI LLAGIGTVPI PGT HomoSapiens PMID:34811538 tetramer-sort yes amplicon-seq Naive T cells T1D T1D_1 chip0420_552763 PBMC +5278 CAAFAGYMLPY TRAV29/DV5*01 TRAJ39*01 HLA-A*02:01 B2M MHCI GLCTLVAML BLMF1 EBV PMID:34811538 tetramer-sort yes amplicon-seq effector memory T cells T1D T1D_2 chip0420_71957 PBMC +5279 CAPV*GAc?aGFQKLVF TRAV25*01 TRAJ8*01 HLA-A*02:01 B2M MHCI YVLDHLIVV BRLF1 EBV PMID:34811538 tetramer-sort yes amplicon-seq effector T cells healthy healthy_1 chip0420_194161 PBMC +5286 CASSPDQTSSYNEQFF TRBV27*01 TRBJ2-1*01 HLA-A*02:01 B2M MHCI YVLDHLIVV BRLF1 EBV PMID:34811538 tetramer-sort yes amplicon-seq effector T cells T1D T1D_1 chip0420_573890 PBMC +5290 CSVGSRGTNEKLFF TRBV29-1*01 TRBJ1-4*01 HLA-A*02:01 B2M MHCI GLCTLVAML BLMF1 EBV PMID:34811538 tetramer-sort yes amplicon-seq effector T cells T1D T1D_1 chip0420_716297 PBMC +5291 CASSTRSSYEQYF TRBV19*01 TRBJ2-7*01 HLA-A*02:01 B2M MHCI GILGFVFTL M1 InfluenzaA PMID:34811538 tetramer-sort yes amplicon-seq transitional T cells between effector and memory populations healthy healthy_1 chip0420_172409 PBMC +5292 CASSPDQTSSYNEQFF TRBV27*01 TRBJ2-1*01 HLA-A*02:01 B2M MHCI YVLDHLIVV BRLF1 EBV PMID:34811538 tetramer-sort yes amplicon-seq effector memory T cells T1D T1D_1 chip0420_330047 PBMC +5299 CASSPVSGSTYEQYF TRBV3-1*01 TRBJ2-7*01 HLA-A*02:01 B2M MHCI GLCTLVAML BLMF1 EBV PMID:34811538 tetramer-sort yes amplicon-seq effector T cells T1D T1D_1 chip0420_482756 PBMC +5301 CALYNTDKLIF TRAV9-2*01 TRAJ34*01 CASSPVSGSTYEQYF TRBV3-1*01 TRBJ2-7*01 HLA-A*02:01 B2M MHCI GLCTLVAML BLMF1 EBV PMID:34811538 tetramer-sort yes amplicon-seq effector memory T cells T1D T1D_1 chip0420_712688 PBMC +5302 CAASYEKLTF TRAV13-1*01 TRAJ48*01 CASSFDGGAPGEQFF TRBV12-3*01,TRBV12-4*01 TRBJ2-1*01 HLA-A*02:01 B2M MHCI KLQVFLIVL IAPP HomoSapiens PMID:34811538 tetramer-sort yes amplicon-seq Naive T cells T1D T1D_1 chip0420_600616 PBMC +5303 CAMSSSNFGNE*LTF TRAV12-3*01 TRAJ48*01 CASSYSRSSTEAFF TRBV6-5*01 TRBJ1-1*01 HLA-A*02:01 B2M MHCI LLAGIGTVPI PGT HomoSapiens PMID:34811538 tetramer-sort yes amplicon-seq Naive T cells T1D T1D_1 chip0420_607145 PBMC +5305 CACRSLAGGIPEQFF TRBV28*01 TRBJ2-1*01 HLA-A*02:01 B2M MHCI LLAGIGTVPI PGT HomoSapiens PMID:34811538 tetramer-sort yes amplicon-seq Naive T cells T1D T1D_1 chip0420_748334 PBMC +5309 CASSAGTVAPGELFF TRBV2*01 TRBJ2-2*01 HLA-A*02:01 B2M MHCI GLCTLVAML BLMF1 EBV PMID:34811538 tetramer-sort yes amplicon-seq effector memory T cells T1D T1D_1 chip0420_224152 PBMC +5313 CAGGGSQGNLIF TRAV27*01 TRAJ42*01 HLA-A*02:01 B2M MHCI GILGFVFTL M1 InfluenzaA PMID:34811538 tetramer-sort yes amplicon-seq transitional T cells between effector and memory populations healthy healthy_1 chip0420_270210 PBMC +5316 CASSSGQVLPNEQFF TRBV2*01 TRBJ2-1*01 HLA-A*02:01 B2M MHCI GLCTLVAML BLMF1 EBV PMID:34811538 tetramer-sort yes amplicon-seq effector memory T cells T1D T1D_1 chip0420_844958 PBMC +5318 CASSNPPVGNSPLHF TRBV6-2*01,TRBV6-3*01 TRBJ1-6*01 HLA-A*02:01 B2M MHCI LLAGIGTVPI PGT HomoSapiens PMID:34811538 tetramer-sort yes amplicon-seq Naive T cells T1D T1D_1 chip0420_725183 PBMC +5319 CAVKDTDKLIF TRAV8-1*01 TRAJ34*01 CASSTRSSYEQYF TRBV19*01 TRBJ2-7*01 HLA-A*02:01 B2M MHCI GILGFVFTL M1 InfluenzaA PMID:34811538 tetramer-sort yes amplicon-seq effector T cells healthy healthy_1 chip0420_507649 PBMC +5323 CSVGSRGTNEKLFF TRBV29-1*01 TRBJ1-4*01 HLA-A*02:01 B2M MHCI GLCTLVAML BLMF1 EBV PMID:34811538 tetramer-sort yes amplicon-seq effector memory T cells T1D T1D_1 chip0420_581495 PBMC +5324 CAFMVNAGGTSYGKLTF TRAV38-1*01 TRAJ52*01 HLA-A*02:01 B2M MHCI GILGFVFTL M1 InfluenzaA PMID:34811538 tetramer-sort yes amplicon-seq transitional T cells between effector and memory populations healthy healthy_1 chip0420_523183 PBMC +5325 CASSSGQVLPNEQFF TRBV2*01 TRBJ2-1*01 HLA-A*02:01 B2M MHCI GLCTLVAML BLMF1 EBV PMID:34811538 tetramer-sort yes amplicon-seq effector memory T cells T1D T1D_1 chip0420_547824 PBMC +5326 CVVNGRDSSYKLIF TRAV12-1*01 TRAJ12*01 CASSSGLVAPGELFF TRBV2*01 TRBJ2-2*01 HLA-A*02:01 B2M MHCI GLCTLVAML BLMF1 EBV PMID:34811538 tetramer-sort yes amplicon-seq effector memory T cells T1D T1D_2 chip0420_356331 PBMC +5327 CASSQTSGVGEQYF TRBV28*01 TRBJ2-7*01 HLA-A*02:01 B2M MHCI LLAGIGTVPI PGT HomoSapiens PMID:34811538 tetramer-sort yes amplicon-seq Naive T cells healthy healthy_1 chip0420_487244 PBMC +5335 RAGRLVRDPLGEQYF TRBV28*01 TRBJ2-7*01 HLA-B*08:01 B2M MHCI RAKFKQLL BZLF1 EBV PMID:34811538 tetramer-sort yes amplicon-seq effector T cells T1D T1D_3 chip0420_642305 PBMC +5340 CVVNGRDSSYKLIL TRAV12-1*01 TRAJ12*01 CASSDGRVHPGTQYF TRBV2*01 TRBJ2-5*01 HLA-A*02:01 B2M MHCI GLCTLVAML BLMF1 EBV PMID:34811538 tetramer-sort yes amplicon-seq effector memory T cells T1D T1D_1 chip0420_775559 PBMC +5341 CASEGQNTEAFF TRBV7-2*01 TRBJ1-1*01 HLA-A*02:01 B2M MHCI LLAGIGTVPI PGT HomoSapiens PMID:34811538 tetramer-sort yes amplicon-seq Naive T cells T1D T1D_2 chip0420_500442 PBMC +5352 CASSARGGRTYEQYF TRBV12-3*01,TRBV12-4*01 TRBJ2-7*01 HLA-A*02:01 B2M MHCI LLAGIGTVPI PGT HomoSapiens PMID:34811538 tetramer-sort yes amplicon-seq effector T cells healthy healthy_2 chip0420_404837 PBMC +5353 CALSEDSGYSTLTF TRAV19*01 TRAJ11*01 HLA-A*02:01 B2M MHCI LVGPTPVNI POL HIV-1 PMID:34811538 tetramer-sort yes amplicon-seq Naive T cells T1D T1D_1 chip0420_289965 PBMC +5357 CASRMGAGDTQYF TRBV10-2*01 TRBJ2-3*01 HLA-A*02:01 B2M MHCI GLCTLVAML BLMF1 EBV PMID:34811538 tetramer-sort yes amplicon-seq effector T cells T1D T1D_2 chip0420_630113 PBMC +5359 CASSIRSSYEQYF TRBV19*01 TRBJ2-7*01 HLA-A*02:01 B2M MHCI GILGFVFTL M1 InfluenzaA PMID:34811538 tetramer-sort yes amplicon-seq effector T cells healthy healthy_1 chip0420_849035 PBMC +5360 CSARVGRVGGEAFF TRBV20-1*01 TRBJ1-1*01 HLA-A*02:01 B2M MHCI LLAGIGTVPI PGT HomoSapiens PMID:34811538 tetramer-sort yes amplicon-seq Naive T cells healthy healthy_1 chip0420_666060 PBMC +5361 CASHQFRTVIPDTEAFF TRBV6-1*01 TRBJ1-1*01 HLA-A*02:01 B2M MHCI LLAGIGTVPI PGT HomoSapiens PMID:34811538 tetramer-sort yes amplicon-seq Naive T cells T1D T1D_1 chip0420_279645 PBMC +5362 CSVEPTIYTDTQYF TRBV29-1*01 TRBJ2-3*01 HLA-A*02:01 B2M MHCI YLLEMLWRL LMP1 EBV PMID:34811538 tetramer-sort yes amplicon-seq Naive T cells healthy healthy_1 chip0420_483709 PBMC +5365 CGPQQNDRRGKLQV TRAV30*01 TRAJ24*01 HLA-A*02:01 B2M MHCI GILGFVFTL M1 InfluenzaA PMID:34811538 tetramer-sort yes amplicon-seq transitional T cells between effector and memory populations T1D T1D_1 chip0420_827551 PBMC +5369 CASSHEIADRDLIYEQYF TRBV3-1*01 TRBJ2-7*01 HLA-A*02:01 B2M MHCI GLCTLVAML BLMF1 EBV PMID:34811538 tetramer-sort yes amplicon-seq effector T cells T1D T1D_1 chip0420_158283 PBMC +5371 CILRRYGGSQGNLIF TRAV26-2*01 TRAJ42*01 HLA-A*02:01 B2M MHCI GLCTLVAML BLMF1 EBV PMID:34811538 tetramer-sort yes amplicon-seq effector memory T cells T1D T1D_1 chip0420_663938 PBMC +5373 CARRARGTVNEQYF TRBV2*01 TRBJ2-7*01 HLA-A*02:01 B2M MHCI LLSLFSLWL ZNT8 HomoSapiens PMID:34811538 tetramer-sort yes amplicon-seq Naive T cells healthy healthy_1 chip0420_488000 PBMC +5375 CASSLPGQHTEAFF TRBV12-3*01,TRBV12-4*01 TRBJ1-1*01 HLA-A*02:01 B2M MHCI GLCTLVAML BLMF1 EBV PMID:34811538 tetramer-sort yes amplicon-seq effector memory T cells T1D T1D_2 chip0420_265311 PBMC +5377 CSARGGDGYEQYF TRBV20-1*01 TRBJ2-7*01 HLA-A*02:01 B2M MHCI RGPGRAFVTI GP160 HIV-1 PMID:34811538 tetramer-sort yes amplicon-seq Naive T cells healthy healthy_1 chip0420_717086 PBMC +5382 CASSYSETGQAFF TRBV6-5*01 TRBJ1-1*01 HLA-A*02:01 B2M MHCI ALAGIGILTV MART1 HomoSapiens PMID:34811538 tetramer-sort yes amplicon-seq Naive T cells T1D T1D_1 chip0420_504491 PBMC +5383 CILPLga?GLQNYL TRAV26-2*01 TRAJ9*01 HLA-A*02:01 B2M MHCI YLLEMLWRL LMP1 EBV PMID:34811538 tetramer-sort yes amplicon-seq central memory T cells T1D T1D_1 chip0420_404246 PBMC +5384 CASSPDQTSSYNEQFF TRBV27*01 TRBJ2-1*01 HLA-A*02:01 B2M MHCI YVLDHLIVV BRLF1 EBV PMID:34811538 tetramer-sort yes amplicon-seq effector T cells T1D T1D_1 chip0420_63418 PBMC +5390 CASSTRSSYEQYF TRBV19*01 TRBJ2-7*01 HLA-A*02:01 B2M MHCI GILGFVFTL M1 InfluenzaA PMID:34811538 tetramer-sort yes amplicon-seq effector T cells healthy healthy_1 chip0420_510230 PBMC +5397 CARRIRRSYEQYL TRBV19*01 TRBJ2-7*01 HLA-A*02:01 B2M MHCI GILGFVFTL M1 InfluenzaA PMID:34811538 tetramer-sort yes amplicon-seq transitional T cells between effector and memory populations healthy healthy_1 chip0420_202685 PBMC +5407 CASRGLLGKREKLFF TRBV19*01 TRBJ1-4*01 HLA-A*02:01 B2M MHCI YVLDHLIVV BRLF1 EBV PMID:34811538 tetramer-sort yes amplicon-seq effector T cells T1D T1D_1 chip0420_578257 PBMC +5409 CSVGTGGTNEKLFF TRBV29-1*01 TRBJ1-4*01 HLA-A*02:01 B2M MHCI GLCTLVAML BLMF1 EBV PMID:34811538 tetramer-sort yes amplicon-seq central memory T cells T1D T1D_2 chip0420_806117 PBMC +5411 LCQQHR??aQETQYF TRBV14*01 TRBJ2-5*01 HLA-A*02:01 B2M MHCI LLAGIGTVPI PGT HomoSapiens PMID:34811538 tetramer-sort yes amplicon-seq Naive T cells T1D T1D_1 chip0420_671393 PBMC +5420 CAWRVQLAGVDEQYF TRBV30*01 TRBJ2-7*01 HLA-A*02:01 B2M MHCI YVLDHLIVV BRLF1 EBV PMID:34811538 tetramer-sort yes amplicon-seq effector T cells T1D T1D_2 chip0420_29309 PBMC +5441 CAATETSYDKVIF TRAV13-1*01 TRAJ50*01 CASSPLGSNEKLFF TRBV7-9*01 TRBJ1-4*01 HLA-B*08:01 B2M MHCI RAKFKQLL BZLF1 EBV PMID:34811538 tetramer-sort yes amplicon-seq effector memory T cells T1D T1D_5 chip0423_332436 PBMC +5442 CILPLAGGTSYGKLTF TRAV26-2*01 TRAJ52*01 CASSLGQAYEQYF TRBV7-8*01 TRBJ2-7*01 HLA-B*08:01 B2M MHCI FLRGRAYGL EBNA3A EBV PMID:34811538 tetramer-sort yes amplicon-seq effector memory T cells T1D T1D_6 chip0423_749504 PBMC +5443 CIVREGGGADGLTF TRAV26-1*01 TRAJ45*01 CASSLAVGEGPQHF TRBV7-9*01 TRBJ1-5*01 HLA-B*08:01 B2M MHCI RAKFKQLL BZLF1 EBV PMID:34811538 tetramer-sort yes amplicon-seq effector memory T cells T1D T1D_4 chip0423_36612 PBMC +5444 CATEGDSGYSTLTF TRAV17*01 TRAJ11*01 CASSPQGGNYGYTF TRBV6-2*01,TRBV6-3*01,TRBV6-1*01 TRBJ1-2*01 HLA-A*02:01 B2M MHCI FLYALALLL LMP2 EBV PMID:34811538 tetramer-sort yes amplicon-seq central memory T cells T1D T1D_4 chip0423_763431 PBMC +5445 CAASETSYDKVIF TRAV13-1*01 TRAJ50*01 CASSLLGQKDTEAFF TRBV7-9*01 TRBJ1-1*01 HLA-B*08:01 B2M MHCI RAKFKQLL BZLF1 EBV PMID:34811538 tetramer-sort yes amplicon-seq effector memory T cells T1D T1D_5 chip0423_55094 PBMC +5446 CAVLQDSNYQLIW TRAV12-2*01 TRAJ33*01 CASSDDGMNTEAFF TRBV10-2*01 TRBJ1-1*01 HLA-A*02:01 B2M MHCI CLGGLLTMV LMP2A EBV PMID:34811538 tetramer-sort yes amplicon-seq effector memory T cells T1D T1D_4 chip0423_255738 PBMC +5447 CAVGDLDAg?gDYGNKLVF TRAV1-2*01 TRAJ47*01 CASSPLTDTQYF TRBV27*01 TRBJ2-3*01 HLA-B*08:01 B2M MHCI RAKFKQLL BZLF1 EBV PMID:34811538 tetramer-sort yes amplicon-seq effector memory T cells T1D T1D_4 chip0423_793246 PBMC +5448 CAESETGANNLFF TRAV5*01 TRAJ36*01 CAAAGTASTDTQYF TRBV10-3*01 TRBJ2-3*01 HLA-B*08:01 B2M MHCI RAKFKQLL BZLF1 EBV PMID:34811538 tetramer-sort yes amplicon-seq effector memory T cells T1D T1D_4 chip0423_610024 PBMC +5449 CAVRDTTWDDKIIF TRAV3*01 TRAJ30*01 CASSLGGGEGASEQFF TRBV7-6*01 TRBJ2-1*01 HLA-B*08:01 B2M MHCI FLRGRAYGL EBNA3A EBV PMID:34811538 tetramer-sort yes amplicon-seq effector memory T cells T1D T1D_4 chip0423_164036 PBMC +5450 CAYRSDDRGKLIF TRAV38-2/DV8*01 TRAJ23*01 CASSPGQGDHEQYF TRBV7-9*01 TRBJ2-7*01 HLA-B*08:01 B2M MHCI RAKFKQLL BZLF1 EBV PMID:34811538 tetramer-sort yes amplicon-seq effector memory T cells T1D T1D_5 chip0423_729864 PBMC +5451 YILPLEGGTSYGKLTF TRAV26-2*01 TRAJ52*01 CASSSGQAYEQYF TRBV7-8*01 TRBJ2-7*01 HLA-B*08:01 B2M MHCI FLRGRAYGL EBNA3A EBV PMID:34811538 tetramer-sort yes amplicon-seq effector memory T cells T1D T1D_4 chip0423_326677 PBMC +5452 CALIKAGNNRKLIW TRAV16*01 TRAJ38*01 CSAGRDGTNEKLFF TRBV29-1*01 TRBJ1-4*01 HLA-A*02:01 B2M MHCI ALAGIGILTV MART1 HomoSapiens PMID:34811538 tetramer-sort yes amplicon-seq effector memory T cells T1D T1D_6 chip0423_87243 PBMC +5453 CVAKETSYGWVVF TRAV12-1*01 TRAJ50*01 CASSALGGRGDTQYF TRBV7-9*01 TRBJ2-3*01 HLA-B*08:01 B2M MHCI RAKFKQLL BZLF1 EBV PMID:34811538 tetramer-sort yes amplicon-seq central memory T cells T1D T1D_5 chip0423_468432 PBMC +5454 CAAMETSYDKVIF TRAV13-1*01 TRAJ50*01 HLA-B*08:01 B2M MHCI RAKFKQLL BZLF1 EBV PMID:34811538 tetramer-sort yes amplicon-seq effector memory T cells T1D T1D_5 chip0423_113048 PBMC +5455 CAATETSYDKVIF TRAV13-1*01 TRAJ50*01 HLA-B*08:01 B2M MHCI RAKFKQLL BZLF1 EBV PMID:34811538 tetramer-sort yes amplicon-seq effector memory T cells T1D T1D_5 chip0423_723878 PBMC +5456 CAPSLNSGGYQKVTF TRAV2*01 TRAJ13*01 CASSVVGGDYGYTF TRBV2*01 TRBJ1-2*01 HLA-B*08:01 B2M MHCI FLRGRAYGL EBNA3A EBV PMID:34811538 tetramer-sort yes amplicon-seq effector memory T cells T1D T1D_4 chip0423_720012 PBMC +5457 CALSQQGDSGGGAAGLTF TRAV9-2*01 TRAJ45*01 CASSSMLAHKTSYNSPLHF TRBV28*01 TRBJ1-6*01 HLA-B*08:01 B2M MHCI RAKFKQLL BZLF1 EBV PMID:34811538 tetramer-sort yes amplicon-seq effector memory T cells T1D T1D_4 chip0423_15828 PBMC +5458 CAELGERGGADGLTS TRAV41*01 TRAJ45*01 CASSPWDTSYEQYF TRBV4-1*01 TRBJ2-7*01 HLA-B*08:01 B2M MHCI RAKFKQLL BZLF1 EBV PMID:34811538 tetramer-sort yes amplicon-seq effector memory T cells T1D T1D_5 chip0423_883674 PBMC +5459 CAGLGEGGSADGLTF TRAV41*01 TRAJ45*01 HLA-B*08:01 B2M MHCI RAKFKQLL BZLF1 EBV PMID:34811538 tetramer-sort yes amplicon-seq effector memory T cells T1D T1D_5 chip0423_455012 PBMC +5460 CAVRDTTWDDKIIF TRAV3*01 TRAJ30*01 CASSLGGGEGASEQFF TRBV7-6*01 TRBJ2-1*01 HLA-B*08:01 B2M MHCI FLRGRAYGL EBNA3A EBV PMID:34811538 tetramer-sort yes amplicon-seq effector memory T cells T1D T1D_4 chip0423_182213 PBMC +5461 CILPLAGGTSYGKLTF TRAV26-2*01 TRAJ52*01 CASRGTSLTYEQYF TRBV6-2*01,TRBV6-3*01 TRBJ2-7*01 HLA-B*08:01 B2M MHCI FLRGRAYGL EBNA3A EBV PMID:34811538 tetramer-sort yes amplicon-seq effector memory T cells tet_neg chip0423_103681 PBMC +5462 CAARETSYDKVIF TRAV13-1*01 TRAJ50*01 CASSLLGTEDEKLFF TRBV7-9*01 TRBJ1-4*01 HLA-B*08:01 B2M MHCI RAKFKQLL BZLF1 EBV PMID:34811538 tetramer-sort yes amplicon-seq effector memory T cells T1D T1D_5 chip0423_755458 PBMC +5463 CAVNRFLADRGSTLGRLYF TRAV12-2*01 TRAJ18*01 CASSQEVTDTQYF TRBV4-3*01 TRBJ2-3*01 HLA-A*02:01 B2M MHCI YLLEMLWRL LMP1 EBV PMID:34811538 tetramer-sort yes amplicon-seq central memory T cells T1D T1D_4 chip0423_879355 PBMC +5464 CAARETSYDKVIF TRAV13-1*01 TRAJ50*01 CASTNLGGFTDTQYF TRBV7-9*01 TRBJ2-3*01 HLA-B*08:01 B2M MHCI RAKFKQLL BZLF1 EBV PMID:34811538 tetramer-sort yes amplicon-seq effector memory T cells T1D T1D_5 chip0423_292493 PBMC +5465 CASSLLSSYNSPLHF TRBV12-3*01,TRBV12-4*01 TRBJ1-6*01 HLA-B*08:01 B2M MHCI RAKFKQLL BZLF1 EBV PMID:34811538 tetramer-sort yes amplicon-seq effector memory T cells T1D T1D_5 chip0423_595059 PBMC +5466 CATEGGSGYSTLTF TRAV17*01 TRAJ11*01 CASTEGTSGGRGTGELFF TRBV2*01 TRBJ2-2*01 HLA-A*02:01 B2M MHCI LLAGIGTVPI PGT HomoSapiens PMID:34811538 tetramer-sort yes amplicon-seq effector memory T cells T1D T1D_4 chip0423_477884 PBMC +5467 CAPSLNSGGYQKVTF TRAV2*01 TRAJ13*01 CASSVVGGDYGYTF TRBV2*01 TRBJ1-2*01 HLA-B*08:01 B2M MHCI FLRGRAYGL EBNA3A EBV PMID:34811538 tetramer-sort yes amplicon-seq effector memory T cells T1D T1D_4 chip0423_336986 PBMC +5468 CILPLAGGTSYGKLTF TRAV26-2*01 TRAJ52*01 CASSLGQAYEQYF TRBV7-8*01 TRBJ2-7*01 HLA-B*08:01 B2M MHCI FLRGRAYGL EBNA3A EBV PMID:34811538 tetramer-sort yes amplicon-seq effector memory T cells T1D T1D_4 chip0423_201398 PBMC +5469 CAGAETSYDKVIF TRAV13-1*01 TRAJ50*01 CASSLLGGDSGNTIYF TRBV7-9*01 TRBJ1-3*01 HLA-B*08:01 B2M MHCI RAKFKQLL BZLF1 EBV PMID:34811538 tetramer-sort yes amplicon-seq effector memory T cells T1D T1D_5 chip0423_248584 PBMC +5470 CAVPGGSQGNLIF TRAV8-3*01 TRAJ42*01 CASSEWELNYGYTF TRBV25-1*01 TRBJ1-2*01 HLA-A*02:01 B2M MHCI YVLDHLIVV BRLF1 EBV PMID:34811538 tetramer-sort yes amplicon-seq effector memory T cells T1D T1D_4 chip0423_188845 PBMC +5471 CAVSDGEGAQKLVF TRAV8-6*01 TRAJ54*01 CASSLTVLAGPNTEAFF TRBV7-3*01 TRBJ1-1*01 HLA-B*08:01 B2M MHCI RAKFKQLL BZLF1 EBV PMID:34811538 tetramer-sort yes amplicon-seq effector memory T cells T1D T1D_4 chip0423_446563 PBMC +5472 CAASLSDYKLSF TRAV29/DV5*01 TRAJ20*01 CASSPRETGNQPQHF TRBV28*01 TRBJ1-5*01 HLA-A*02:01 B2M MHCI LLAGIGTVPI PGT HomoSapiens PMID:34811538 tetramer-sort yes amplicon-seq Naive T cells T1D T1D_4 chip0423_43212 PBMC +5473 CAVNSGNTPLVF TRAV1-2*01 TRAJ29*01 CASSQVNNPGDGYTF TRBV14*01 TRBJ1-2*01 HLA-B*08:01 B2M MHCI QAKWRLQTL EBNA3A EBV PMID:34811538 tetramer-sort yes amplicon-seq effector memory T cells T1D T1D_4 chip0423_759776 PBMC +5474 CALTTNGQRFVF TRAV38-1*01 TRAJ26*01 CSASRDSYEQYF TRBV20-1*01 TRBJ2-7*01 HLA-A*02:01 B2M MHCI YLLEMLWRL LMP1 EBV PMID:34811538 tetramer-sort yes amplicon-seq central memory T cells T1D T1D_4 chip0423_213373 PBMC +5475 CASSPPLSYEQYF TRBV9*01 TRBJ2-7*01 HLA-A*01:01 B2M MHCI HSNLNDATY NP InfluenzaA PMID:34811538 tetramer-sort yes amplicon-seq effector memory T cells T1D T1D_6 chip0423_551206 PBMC +5476 CAATETSYDKVIF TRAV13-1*01 TRAJ50*01 CASSPLGSNEKLFF TRBV7-9*01 TRBJ1-4*01 HLA-B*08:01 B2M MHCI RAKFKQLL BZLF1 EBV PMID:34811538 tetramer-sort yes amplicon-seq effector memory T cells T1D T1D_5 chip0423_176790 PBMC +5477 CILLETSYDKVIF TRAV26-2*01 TRAJ50*01 CASSHTQRGNTEAFF TRBV7-9*01 TRBJ1-1*01 HLA-B*08:01 B2M MHCI RAKFKQLL BZLF1 EBV PMID:34811538 tetramer-sort yes amplicon-seq effector memory T cells T1D T1D_5 chip0423_257913 PBMC +5478 CVVPSGGSYIPTF TRAV12-1*01 TRAJ6*01 CASSQGQAYEQYF TRBV7-8*01 TRBJ2-7*01 HLA-B*08:01 B2M MHCI FLRGRAYGL EBNA3A EBV PMID:34811538 tetramer-sort yes amplicon-seq effector memory T cells T1D T1D_4 chip0423_358725 PBMC +5479 CIVREGGGADGLTF TRAV26-1*01 TRAJ45*01 CASSLAVGEGPQHF TRBV7-9*01 TRBJ1-5*01 HLA-B*08:01 B2M MHCI RAKFKQLL BZLF1 EBV PMID:34811538 tetramer-sort yes amplicon-seq effector memory T cells T1D T1D_4 chip0423_537671 PBMC +5480 CAFPGGGQGSLIF TRAV8-3*01 TRAJ42*01 CASSYSSTGEYF TRBV6-2*01,TRBV6-3*01 TRBJ2-7*01 HLA-A*02:01 B2M MHCI YLLEMLWRL LMP1 EBV PMID:34811538 tetramer-sort yes amplicon-seq central memory T cells T1D T1D_4 chip0423_167216 PBMC +5481 CASSSAVGEGPQHF TRBV7-9*01 TRBJ1-5*01 HLA-B*08:01 B2M MHCI RAKFKQLL BZLF1 EBV PMID:34811538 tetramer-sort yes amplicon-seq effector memory T cells T1D T1D_4 chip0423_218388 PBMC +5482 CAAPETSYDKVIF TRAV13-1*01 TRAJ50*01 CASSLLGEQNSPLHF TRBV7-9*01 TRBJ1-6*01 HLA-B*08:01 B2M MHCI RAKFKQLL BZLF1 EBV PMID:34811538 tetramer-sort yes amplicon-seq effector memory T cells T1D T1D_5 chip0423_790255 PBMC +5483 CAVLQDSNYQLIW TRAV21*01,TRAV12-2*01 TRAJ33*01 CASSDDGMNTEAFF TRBV10-2*01 TRBJ1-1*01 HLA-A*02:01 B2M MHCI CLGGLLTMV LMP2A EBV PMID:34811538 tetramer-sort yes amplicon-seq central memory T cells T1D T1D_4 chip0423_176795 PBMC +5484 CADLETSYDKVIF TRAV13-2*01 TRAJ50*01 CASSSLGTANNSPLHF TRBV7-9*01 TRBJ1-6*01 HLA-B*08:01 B2M MHCI RAKFKQLL BZLF1 EBV PMID:34811538 tetramer-sort yes amplicon-seq central memory T cells T1D T1D_5 chip0423_303351 PBMC +5485 CASSHTTSGGVEQYF TRBV7-9*01 TRBJ2-7*01 HLA-B*08:01 B2M MHCI RAKFKQLL BZLF1 EBV PMID:34811538 tetramer-sort yes amplicon-seq central memory T cells T1D T1D_5 chip0423_337109 PBMC +5486 CAATETSYDKVIF TRAV13-1*01 TRAJ50*01 CASSPLGSNEKLFF TRBV7-9*01 TRBJ1-4*01 HLA-B*08:01 B2M MHCI RAKFKQLL BZLF1 EBV PMID:34811538 tetramer-sort yes amplicon-seq effector memory T cells T1D T1D_5 chip0423_384892 PBMC +5487 CAVAYSGAGSYQLTF TRAV21*01 TRAJ28*01 CASSLAVGEGPQHF TRBV7-9*01 TRBJ1-5*01 HLA-B*08:01 B2M MHCI RAKFKQLL BZLF1 EBV PMID:34811538 tetramer-sort yes amplicon-seq effector memory T cells T1D T1D_4 chip0423_415977 PBMC +5488 CASSDIREGQGEAFF TRBV10-2*01 TRBJ1-1*01 HLA-B*08:01 B2M MHCI QAKWRLQTL EBNA3A EBV PMID:34811538 tetramer-sort yes amplicon-seq effector memory T cells T1D T1D_6 chip0423_184169 PBMC +5489 CASGLVEGTGELFF TRBV12-5*01 TRBJ2-2*01 HLA-B*08:01 B2M MHCI RAKFKQLL BZLF1 EBV PMID:34811538 tetramer-sort yes amplicon-seq effector memory T cells T1D T1D_5 chip0423_341702 PBMC +5490 CAVSAGEGAQQLVF TRAV8-6*01 TRAJ54*01 CASSLTVLAGPNTEAFF TRBV7-3*01 TRBJ1-1*01 HLA-B*08:01 B2M MHCI RAKFKQLL BZLF1 EBV PMID:34811538 tetramer-sort yes amplicon-seq effector memory T cells T1D T1D_4 chip0423_468697 PBMC +5491 CAAIETSYDKVIF TRAV13-1*01 TRAJ50*01 CSVGGNTEAFF TRBV29-1*01 TRBJ1-1*01 HLA-B*08:01 B2M MHCI RAKFKQLL BZLF1 EBV PMID:34811538 tetramer-sort yes amplicon-seq effector memory T cells T1D T1D_5 chip0423_434472 PBMC +5492 CATEGGSGYSTLTF TRAV17*01 TRAJ11*01 CASSRQGGNYGYTF TRBV6-1*01 TRBJ1-2*01 HLA-A*02:01 B2M MHCI FLYALALLL LMP2 EBV PMID:34811538 tetramer-sort yes amplicon-seq effector memory T cells T1D T1D_6 chip0423_487739 PBMC +5493 CASSLGQAYEQYF TRBV7-8*01 TRBJ2-7*01 HLA-B*08:01 B2M MHCI FLRGRAYGL EBNA3A EBV PMID:34811538 tetramer-sort yes amplicon-seq effector memory T cells T1D T1D_6 chip0423_299512 PBMC +5494 CILPLAGGTSYGKLTF TRAV26-2*01 TRAJ52*01 CASSLGQAYEQYF TRBV7-8*01 TRBJ2-7*01 HLA-B*08:01 B2M MHCI FLRGRAYGL EBNA3A EBV PMID:34811538 tetramer-sort yes amplicon-seq effector memory T cells T1D T1D_6 chip0423_842700 PBMC +5495 CASSYSSTGEYF TRBV6-2*01,TRBV6-3*01 TRBJ2-7*01 HLA-A*02:01 B2M MHCI YLLEMLWRL LMP1 EBV PMID:34811538 tetramer-sort yes amplicon-seq effector memory T cells tet_neg chip0423_808849 PBMC +5496 CASSQVNNPGDGYTF TRBV14*01 TRBJ1-2*01 HLA-B*08:01 B2M MHCI QAKWRLQTL EBNA3A EBV PMID:34811538 tetramer-sort yes amplicon-seq effector memory T cells T1D T1D_4 chip0423_12150 PBMC +5497 CAVNSGNTPLVF TRAV1-2*01 TRAJ29*01 CASSQVNNPGDGYTF TRBV14*01 TRBJ1-2*01 HLA-B*08:01 B2M MHCI QAKWRLQTL EBNA3A EBV PMID:34811538 tetramer-sort yes amplicon-seq effector memory T cells T1D T1D_4 chip0423_842141 PBMC +5498 CILPLAGGTSYGKLTF TRAV26-2*01 TRAJ52*01 CASSLGQAYEQYF TRBV7-8*01 TRBJ2-7*01 HLA-B*08:01 B2M MHCI FLRGRAYGL EBNA3A EBV PMID:34811538 tetramer-sort yes amplicon-seq effector memory T cells T1D T1D_4 chip0423_752579 PBMC +5499 CAASAGLYSGAGSYQLTF TRAV29/DV5*01 TRAJ28*01 CASSLNPVLRLDTQYF TRBV28*01 TRBJ2-3*01 HLA-B*08:01 B2M MHCI QAKWRLQTL EBNA3A EBV PMID:34811538 tetramer-sort yes amplicon-seq central memory T cells T1D T1D_4 chip0423_498640 PBMC +5500 CAATETSYDKVIF TRAV13-1*01 TRAJ50*01 CSAIEFRDPNQPQHF TRBV20-1*01 TRBJ1-5*01 HLA-A*02:01 B2M MHCI YLLEMLWRL LMP1 EBV PMID:34811538 tetramer-sort yes amplicon-seq central memory T cells T1D T1D_4 chip0423_846553 PBMC +5501 CASSHSSTGELFF TRBV12-3*01,TRBV12-4*01 TRBJ2-2*01 HLA-B*08:01 B2M MHCI RAKFKQLL BZLF1 EBV PMID:34811538 tetramer-sort yes amplicon-seq effector memory T cells T1D T1D_5 chip0423_207951 PBMC +5502 CAAIETSYDKVIF TRAV13-1*01 TRAJ50*01 CSVGGNTEAFF TRBV29-1*01 TRBJ1-1*01 HLA-B*08:01 B2M MHCI RAKFKQLL BZLF1 EBV PMID:34811538 tetramer-sort yes amplicon-seq effector memory T cells T1D T1D_5 chip0423_739299 PBMC +5503 CASSQVNNPGDGYTF TRBV14*01 TRBJ1-2*01 HLA-B*08:01 B2M MHCI QAKWRLQTL EBNA3A EBV PMID:34811538 tetramer-sort yes amplicon-seq effector memory T cells T1D T1D_4 chip0423_454610 PBMC +5504 CAARETSYDKMIF TRAV13-1*01 TRAJ50*01 CASSLVQGYEQYF TRBV7-9*01 TRBJ2-7*01 HLA-B*08:01 B2M MHCI RAKFKQLL BZLF1 EBV PMID:34811538 tetramer-sort yes amplicon-seq effector T cells T1D T1D_5 chip0423_450834 PBMC +5505 CAVNSRGSEKLVF TRAV12-2*01 TRAJ57*01 CASTPRALTGNTIYF TRBV3-1*01 TRBJ1-3*01 HLA-A*02:01 B2M MHCI LLAGIGTVPI PGT HomoSapiens PMID:34811538 tetramer-sort yes amplicon-seq Naive T cells T1D T1D_4 chip0423_790371 PBMC +5506 CAVNSRNTPLVF TRAV1-2*01 TRAJ29*01 CASSQVNNPGDGYTF TRBV14*01 TRBJ1-2*01 HLA-B*08:01 B2M MHCI QAKWRLQTL EBNA3A EBV PMID:34811538 tetramer-sort yes amplicon-seq effector memory T cells T1D T1D_4 chip0423_168075 PBMC +5507 CALTTYGQNFVF TRAV38-1*01 TRAJ26*01 CSASRDSYEQYF TRBV20-1*01 TRBJ2-7*01 HLA-A*02:01 B2M MHCI YLLEMLWRL LMP1 EBV PMID:34811538 tetramer-sort yes amplicon-seq central memory T cells T1D T1D_4 chip0423_109472 PBMC +5508 CAAMETSYDKVIF TRAV13-1*01 TRAJ50*01 CASSYLDRENTEAFF TRBV7-2*01 TRBJ1-1*01 HLA-B*08:01 B2M MHCI RAKFKQLL BZLF1 EBV PMID:34811538 tetramer-sort yes amplicon-seq central memory T cells T1D T1D_5 chip0423_227490 PBMC +5509 CAAPETSYDKVIF TRAV13-1*01 TRAJ50*01 CASSLLGEQNSPLHF TRBV7-9*01 TRBJ1-6*01 HLA-B*08:01 B2M MHCI RAKFKQLL BZLF1 EBV PMID:34811538 tetramer-sort yes amplicon-seq effector memory T cells T1D T1D_5 chip0423_854258 PBMC +5510 CSAGRDGTNEKLFF TRBV29-1*01 TRBJ1-4*01 HLA-A*02:01 B2M MHCI GLCTLVAML BLMF1 EBV PMID:34811538 tetramer-sort yes amplicon-seq effector T cells T1D T1D_6 chip0423_714078 PBMC +5511 CAVYSTANYGYTF TRBV24-1*01 TRBJ1-2*01 HLA-B*08:01 B2M MHCI NLIFKWIL G6PC2 HomoSapiens PMID:34811538 tetramer-sort yes amplicon-seq transitional T cells between effector and memory populations T1D T1D_4 chip0423_54472 PBMC +5512 CAENETGANNLFF TRAV5*01 TRAJ36*01 CAAAGTASTDTQYF TRBV10-3*01 TRBJ2-3*01 HLA-B*08:01 B2M MHCI RAKFKQLL BZLF1 EBV PMID:34811538 tetramer-sort yes amplicon-seq effector memory T cells T1D T1D_4 chip0423_153856 PBMC +5513 CASSPAGAITASTDTQYF TRBV12-3*01,TRBV12-4*01 TRBJ2-3*01 HLA-B*08:01 B2M MHCI RAKFKQLL BZLF1 EBV PMID:34811538 tetramer-sort yes amplicon-seq effector memory T cells T1D T1D_5 chip0423_747348 PBMC +5514 CAGDGRTGANNLFF TRAV36/DV7*01 TRAJ36*01 CASSDDGMNTEAFF TRBV10-2*01 TRBJ1-1*01 HLA-A*02:01 B2M MHCI CLGGLLTMV LMP2A EBV PMID:34811538 tetramer-sort yes amplicon-seq central memory T cells T1D T1D_4 chip0423_710220 PBMC +5515 CAAKETSYDKVIF TRAV13-1*01 TRAJ50*01 CASSLLGTEDNSPLHF TRBV7-9*01 TRBJ1-6*01 HLA-B*08:01 B2M MHCI RAKFKQLL BZLF1 EBV PMID:34811538 tetramer-sort yes amplicon-seq effector memory T cells T1D T1D_5 chip0423_334218 PBMC +5516 CILREGGGPDGLPF TRAV26-1*01 TRAJ45*01 CASSLAVGEGPQHF TRBV7-9*01 TRBJ1-5*01 HLA-B*08:01 B2M MHCI RAKFKQLL BZLF1 EBV PMID:34811538 tetramer-sort yes amplicon-seq effector T cells T1D T1D_4 chip0423_446417 PBMC +5517 CAGSSEDRDDKIIF TRAV13-1*01 TRAJ30*01 CASSVGRGSTEAFF TRBV9*01 TRBJ1-1*01 HLA-B*08:01 B2M MHCI RAKFKQLL BZLF1 EBV PMID:34811538 tetramer-sort yes amplicon-seq effector memory T cells T1D T1D_4 chip0423_98772 PBMC +5518 CASNTGTASKLTF TRAV29/DV5*01 TRAJ44*01 CASSLAVGEGPQHF TRBV7-9*01 TRBJ1-5*01 HLA-B*08:01 B2M MHCI RAKFKQLL BZLF1 EBV PMID:34811538 tetramer-sort yes amplicon-seq effector memory T cells T1D T1D_4 chip0423_64817 PBMC +5519 CAVSDGEGAQKLVF TRAV8-6*01 TRAJ54*01 CASSQDPRTQGVQPQHF TRBV6-2*01,TRBV6-3*01 TRBJ1-5*01 HLA-B*08:01 B2M MHCI RAKFKQLL BZLF1 EBV PMID:34811538 tetramer-sort yes amplicon-seq effector memory T cells tet_neg chip0423_157214 PBMC +5520 CGPERDSGNTPLVF TRAV30*01 TRAJ29*01 CASSWGPEAFF TRBV7-9*01 TRBJ1-1*01 HLA-B*08:01 B2M MHCI FLRGRAYGL EBNA3A EBV PMID:34811538 tetramer-sort yes amplicon-seq effector T cells T1D T1D_4 chip0423_184129 PBMC +5521 CAVPGGSQGNLIF TRAV8-3*01 TRAJ42*01 CASSYSSTGEYF TRBV6-2*01,TRBV6-3*01 TRBJ2-7*01 HLA-A*02:01 B2M MHCI YLLEMLWRL LMP1 EBV PMID:34811538 tetramer-sort yes amplicon-seq central memory T cells T1D T1D_4 chip0423_89387 PBMC +5523 CAVNFNKFYF TRAV8-3*01 TRAJ21*01 CASSATGDYYGYTF TRBV3-1*01 TRBJ1-2*01 HLA-A*02:01 B2M MHCI YVLDHLIVV BRLF1 EBV PMID:34811538 tetramer-sort yes amplicon-seq effector memory T cells healthy healthy_4 chip0423_362526 PBMC +5524 CASSQVNNPGDGYTF TRBV14*01 TRBJ1-2*01 HLA-B*08:01 B2M MHCI QAKWRLQTL EBNA3A EBV PMID:34811538 tetramer-sort yes amplicon-seq effector memory T cells T1D T1D_4 chip0423_192783 PBMC +5525 CAATETSYDKVIF TRAV13-1*01 TRAJ50*01 CASSPPGRNEKLFF TRBV12-3*01,TRBV12-4*01 TRBJ1-4*01 HLA-B*08:01 B2M MHCI RAKFKQLL BZLF1 EBV PMID:34811538 tetramer-sort yes amplicon-seq effector memory T cells T1D T1D_5 chip0423_713995 PBMC +5526 CASNIRAGGSYEQYF TRBV28*01 TRBJ2-7*01 HLA-A*02:01 B2M MHCI YLLEMLWRL LMP1 EBV PMID:34811538 tetramer-sort yes amplicon-seq effector memory T cells T1D T1D_4 chip0423_502114 PBMC +5527 CILPLAGGTSYGKLTF TRAV26-2*01 TRAJ52*01 CASSLGQAYEQYF TRBV7-8*01 TRBJ2-7*01 HLA-B*08:01 B2M MHCI FLRGRAYGL EBNA3A EBV PMID:34811538 tetramer-sort yes amplicon-seq effector memory T cells T1D T1D_6 chip0423_18166 PBMC +5528 CAMRAIEGANNLFF TRAV14/DV4*01 TRAJ36*01 CASSLVEILYGYTF TRBV7-9*01 TRBJ1-2*01 HLA-B*08:01 B2M MHCI RAKFKQLL BZLF1 EBV PMID:34811538 tetramer-sort yes amplicon-seq effector T cells T1D T1D_5 chip0423_875719 PBMC +5529 RASQLAGGTGELFF TRBV24-1*01 TRBJ2-2*01 HLA-B*08:01 B2M MHCI RAKFKQLL BZLF1 EBV PMID:34811538 tetramer-sort yes amplicon-seq transitional T cells between effector and memory populations T1D T1D_5 chip0423_598974 PBMC +5530 CAATETSYDKMIF TRAV13-1*01 TRAJ50*01 CASSPLGSNEKLFF TRBV7-9*01 TRBJ1-4*01 HLA-B*08:01 B2M MHCI RAKFKQLL BZLF1 EBV PMID:34811538 tetramer-sort yes amplicon-seq effector memory T cells T1D T1D_5 chip0423_636710 PBMC +5531 CATSEMGGSEAFF TRAV17*01 TRAJ40*01 CATSEMGGSEAFF TRBV24-1*01 TRBJ1-1*01 HLA-B*08:01 B2M MHCI RAKFKQLL BZLF1 EBV PMID:34811538 tetramer-sort yes amplicon-seq effector T cells T1D T1D_5 chip0423_410267 PBMC +5532 CAVNSGNTPLVF TRAV1-2*01 TRAJ29*01 CASSQVNNPGDGYTF TRBV14*01 TRBJ1-2*01 HLA-B*08:01 B2M MHCI QAKWRLQTL EBNA3A EBV PMID:34811538 tetramer-sort yes amplicon-seq effector memory T cells T1D T1D_4 chip0423_7282 PBMC +5533 CSARDRVGNTIYF TRBV20-1*01 TRBJ1-3*01 HLA-A*02:01 B2M MHCI GLCTLVAML BLMF1 EBV PMID:34811538 tetramer-sort yes amplicon-seq effector memory T cells T1D T1D_4 chip0423_440377 PBMC +5534 CPCMIPVYPGTLIF TRAV38-1*01 TRAJ42*01 CASSGSRTYEQYF TRBV2*01 TRBJ2-7*01 HLA-A*02:01 B2M MHCI CLGGLLTMV LMP2A EBV PMID:34811538 tetramer-sort yes amplicon-seq effector memory T cells tet_neg chip0423_119614 PBMC +5535 CAMREGGGGGFTTIC TRAV14/DV4*01 TRAJ9*01 CASSSGLAGGSHTGELFF TRBV11-1*01 TRBJ2-2*01 HLA-B*08:01 B2M MHCI RAKFKQLL BZLF1 EBV PMID:34811538 tetramer-sort yes amplicon-seq effector memory T cells T1D T1D_5 chip0423_552537 PBMC +5536 CAFRNGGSQGNLIF TRAV24*01 TRAJ42*01 CATSDLAGGTDTQYF TRBV24-1*01 TRBJ2-3*01 HLA-A*02:01 B2M MHCI LLAGIGTVPI PGT HomoSapiens PMID:34811538 tetramer-sort yes amplicon-seq Naive T cells T1D T1D_6 chip0423_475447 PBMC +5537 CGTETDNNAGNMLTF TRAV30*01 TRAJ39*01 CASSIYSINEQFF TRBV19*01 TRBJ2-1*01 HLA-A*02:01 B2M MHCI GILGFVFTL M1 InfluenzaA PMID:34811538 tetramer-sort yes amplicon-seq transitional T cells between effector and memory populations T1D T1D_6 chip0423_200914 PBMC +5538 CVVSASGGSYIPTF TRAV10*01 TRAJ6*01 CASSPTVGFAGELFF TRBV4-3*01 TRBJ2-2*01 HLA-B*08:01 B2M MHCI FLRGRAYGL EBNA3A EBV PMID:34811538 tetramer-sort yes amplicon-seq effector memory T cells T1D T1D_4 chip0423_502473 PBMC +5539 CAVGSGDTPLVF TRAV1-2*01 TRAJ29*01 CASSHEQGWETQYF TRBV3-1*01 TRBJ2-5*01 HLA-B*08:01 B2M MHCI QAKWRLQTL EBNA3A EBV PMID:34811538 tetramer-sort yes amplicon-seq effector memory T cells tet_neg chip0423_253019 PBMC +5540 CAVGGHSTLTF TRAV21*01,TRAV12-1*01 TRAJ11*01 CSARRRRQLRPLHF TRBV20-1*01 TRBJ1-6*01 HLA-B*08:01 B2M MHCI QAKWRLQTL EBNA3A EBV PMID:34811538 tetramer-sort yes amplicon-seq effector memory T cells T1D T1D_6 chip0423_83161 PBMC +5541 CAMSEDGF TRAV12-3*01 TRAJ37*01,TRAJ27*01 CASSPDGSTGELFF TRBV12-3*01,TRBV12-4*01 TRBJ2-2*01 HLA-B*08:01 B2M MHCI RAKFKQLL BZLF1 EBV PMID:34811538 tetramer-sort yes amplicon-seq effector memory T cells T1D T1D_4 chip0423_615428 PBMC +5542 CVVIDYGQNFVF TRAV8-2*01 TRAJ26*01 CASSAWGGADPTDTQYF TRBV9*01 TRBJ2-3*01 HLA-B*08:01 B2M MHCI LRLRLDQL GFAP HomoSapiens PMID:34811538 tetramer-sort yes amplicon-seq transitional T cells between effector and memory populations T1D T1D_6 chip0423_789850 PBMC +5543 CILPLAGGTSYGKLTF TRAV26-2*01 TRAJ52*01 CASSLGQAYEQYF TRBV7-8*01 TRBJ2-7*01 HLA-B*08:01 B2M MHCI FLRGRAYGL EBNA3A EBV PMID:34811538 tetramer-sort yes amplicon-seq effector memory T cells T1D T1D_6 chip0423_334420 PBMC +5544 CSAGRDGTNEKLFF TRBV29-1*01 TRBJ1-4*01 HLA-A*02:01 B2M MHCI GLCTLVAML BLMF1 EBV PMID:34811538 tetramer-sort yes amplicon-seq effector memory T cells T1D T1D_6 chip0423_819030 PBMC +5545 CAVSGNTGKLIS TRAV20*01 TRAJ37*01 CSARDQVGNTIYF TRBV20-1*01 TRBJ1-3*01 HLA-B*08:01 B2M MHCI WMRLLPLL INS HomoSapiens PMID:34811538 tetramer-sort yes amplicon-seq transitional T cells between effector and memory populations T1D T1D_6 chip0423_721301 PBMC +5546 CAVRILPNFGNEKLTF TRAV21*01 TRAJ48*01 CASTSTETVDGYTF TRBV5-4*01 TRBJ1-2*01 HLA-B*08:01 B2M MHCI QAKWRLQTL EBNA3A EBV PMID:34811538 tetramer-sort yes amplicon-seq effector memory T cells T1D T1D_6 chip0423_577947 PBMC +5547 CIVREGGGAAGLPF TRAV26-1*01 TRAJ45*01 CASSLAVGEGPQHF TRBV7-9*01 TRBJ1-5*01 HLA-B*08:01 B2M MHCI RAKFKQLL BZLF1 EBV PMID:34811538 tetramer-sort yes amplicon-seq effector T cells T1D T1D_4 chip0423_419543 PBMC +5548 CASSLGQAYEQYF TRBV7-8*01 TRBJ2-7*01 HLA-B*08:01 B2M MHCI FLRGRAYGL EBNA3A EBV PMID:34811538 tetramer-sort yes amplicon-seq effector memory T cells T1D T1D_4 chip0423_600648 PBMC +5549 CASSLAVGEGPQHF TRBV7-9*01 TRBJ1-5*01 HLA-B*08:01 B2M MHCI RAKFKQLL BZLF1 EBV PMID:34811538 tetramer-sort yes amplicon-seq effector memory T cells T1D T1D_4 chip0423_745128 PBMC +5550 CALTTYGQNFVF TRAV38-1*01 TRAJ26*01 CSASRDSYEQYF TRBV20-1*01 TRBJ2-7*01 HLA-A*02:01 B2M MHCI YLLEMLWRL LMP1 EBV PMID:34811538 tetramer-sort yes amplicon-seq central memory T cells T1D T1D_4 chip0423_748482 PBMC +5551 CASSQVNNPGDGYTF TRBV14*01 TRBJ1-2*01 HLA-B*08:01 B2M MHCI QAKWRLQTL EBNA3A EBV PMID:34811538 tetramer-sort yes amplicon-seq effector memory T cells T1D T1D_4 chip0423_561357 PBMC +5552 CAAAETSYDKVIF TRAV13-1*01 TRAJ50*01 CASSALGQTHTEAFF TRBV7-9*01 TRBJ1-1*01 HLA-B*08:01 B2M MHCI RAKFKQLL BZLF1 EBV PMID:34811538 tetramer-sort yes amplicon-seq effector memory T cells T1D T1D_5 chip0423_564020 PBMC +5553 CASSLHRTLLSGNTIYF TRBV28*01 TRBJ1-3*01 HLA-B*08:01 B2M MHCI QAKWRLQTL EBNA3A EBV PMID:34811538 tetramer-sort yes amplicon-seq effector memory T cells T1D T1D_4 chip0423_544441 PBMC +5554 CAMREGRDDKIIF TRAV14/DV4*01 TRAJ30*01 CASSLTVLAGPNTEAFF TRBV7-3*01 TRBJ1-1*01 HLA-B*08:01 B2M MHCI RAKFKQLL BZLF1 EBV PMID:34811538 tetramer-sort yes amplicon-seq effector memory T cells T1D T1D_4 chip0423_479359 PBMC +5555 CAMREGEDSNYQLIW TRAV14/DV4*01 TRAJ33*01 CASSQEGHLTNYGYTF TRBV4-2*01 TRBJ1-2*01 HLA-A*02:01 B2M MHCI GLCTLVAML BLMF1 EBV PMID:34811538 tetramer-sort yes amplicon-seq effector memory T cells T1D T1D_4 chip0423_444944 PBMC +5556 CAASKIEga?GGADGLTF TRAV23/DV6*01 TRAJ45*01 CASSLGQAYEQYF TRBV7-8*01 TRBJ2-7*01 HLA-B*08:01 B2M MHCI FLRGRAYGL EBNA3A EBV PMID:34811538 tetramer-sort yes amplicon-seq effector memory T cells T1D T1D_6 chip0423_225151 PBMC +5557 CAAQETSYDKVIF TRAV13-1*01 TRAJ50*01 CASTQVDRPNYGYTF TRBV7-9*01 TRBJ1-2*01 HLA-B*08:01 B2M MHCI RAKFKQLL BZLF1 EBV PMID:34811538 tetramer-sort yes amplicon-seq effector memory T cells T1D T1D_5 chip0423_669313 PBMC +5558 CASSDIREGQGEAFF TRBV10-2*01 TRBJ1-1*01 HLA-B*08:01 B2M MHCI QAKWRLQTL EBNA3A EBV PMID:34811538 tetramer-sort yes amplicon-seq central memory T cells T1D T1D_6 chip0423_647719 PBMC +5559 CAVLQDSNYQLIW TRAV21*01,TRAV12-2*01 TRAJ33*01 CASSDDGMNTEAFF TRBV10-2*01 TRBJ1-1*01 HLA-A*02:01 B2M MHCI CLGGLLTMV LMP2A EBV PMID:34811538 tetramer-sort yes amplicon-seq effector memory T cells T1D T1D_4 chip0423_469892 PBMC +5560 CASSPQGGNYGYTF TRBV6-1*01 TRBJ1-2*01 HLA-A*02:01 B2M MHCI FLYALALLL LMP2 EBV PMID:34811538 tetramer-sort yes amplicon-seq effector memory T cells T1D T1D_4 chip0423_225766 PBMC +5561 CILRAGGGAVGLAF TRAV26-1*01 TRAJ45*01 CASSLAVGEGPQHF TRBV7-9*01 TRBJ1-5*01 HLA-B*08:01 B2M MHCI RAKFKQLL BZLF1 EBV PMID:34811538 tetramer-sort yes amplicon-seq effector memory T cells T1D T1D_4 chip0423_623412 PBMC +5562 CIFLLAGGPRYGELTF TRAV26-2*01 TRAJ52*01 CASSLGQAYEQYF TRBV7-8*01 TRBJ2-7*01 HLA-B*08:01 B2M MHCI FLRGRAYGL EBNA3A EBV PMID:34811538 tetramer-sort yes amplicon-seq effector memory T cells T1D T1D_6 chip0423_680833 PBMC +5563 CASSQVNNPGDGYTF TRBV14*01 TRBJ1-2*01 HLA-B*08:01 B2M MHCI QAKWRLQTL EBNA3A EBV PMID:34811538 tetramer-sort yes amplicon-seq effector memory T cells T1D T1D_4 chip0423_625651 PBMC +5564 CAVPGGSQGNLIF TRAV8-3*01 TRAJ42*01 CASSYSSTGEYF TRBV6-2*01,TRBV6-3*01 TRBJ2-7*01 HLA-A*02:01 B2M MHCI YLLEMLWRL LMP1 EBV PMID:34811538 tetramer-sort yes amplicon-seq central memory T cells T1D T1D_4 chip0423_756763 PBMC +5565 CAASETSYDKVIF TRAV13-1*01 TRAJ50*01 CASSALGHPNQPQHF TRBV7-9*01 TRBJ1-5*01 HLA-B*08:01 B2M MHCI RAKFKQLL BZLF1 EBV PMID:34811538 tetramer-sort yes amplicon-seq effector T cells T1D T1D_5 chip0423_118050 PBMC +5566 CASSAIRAGQGEAFF TRBV10-2*01 TRBJ1-1*01 HLA-B*08:01 B2M MHCI QAKWRLQTL EBNA3A EBV PMID:34811538 tetramer-sort yes amplicon-seq central memory T cells T1D T1D_6 chip0423_438512 PBMC +5567 CSARDRVGNGYTF TRBV20-1*01 TRBJ1-2*01 HLA-A*02:01 B2M MHCI GLCTLVAML BLMF1 EBV PMID:34811538 tetramer-sort yes amplicon-seq effector memory T cells T1D T1D_4 chip0423_608666 PBMC +5568 CASSLLGQLNTEAFF TRAV36/DV7*01 TRAJ40*01 CASSLLGQLNTEAFF TRBV7-9*01 TRBJ1-1*01 HLA-B*08:01 B2M MHCI RAKFKQLL BZLF1 EBV PMID:34811538 tetramer-sort yes amplicon-seq effector memory T cells T1D T1D_5 chip0423_82356 PBMC +5569 CAVRDIHTGGFKTIF TRAV3*01 TRAJ9*01 CASSARDDYDEQYF TRBV9*01 TRBJ2-7*01 HLA-A*02:01 B2M MHCI GILGFVFTL M1 InfluenzaA PMID:34811538 tetramer-sort yes amplicon-seq transitional T cells between effector and memory populations T1D T1D_6 chip0423_505933 PBMC +5570 CAYPPAGGTRYGELTF TRAV38-2/DV8*01 TRAJ52*01 CASSVETGRNSEQYF TRBV9*01 TRBJ2-7*01 HLA-B*08:01 B2M MHCI NLIFKWIL G6PC2 HomoSapiens PMID:34811538 tetramer-sort yes amplicon-seq Naive T cells tet_neg chip0423_287081 PBMC +5571 CAARIGGYSTLTF TRAV13-1*01 TRAJ11*01 CASSQVNNPGDGYTF TRBV14*01 TRBJ1-2*01 HLA-B*08:01 B2M MHCI QAKWRLQTL EBNA3A EBV PMID:34811538 tetramer-sort yes amplicon-seq effector memory T cells tet_neg chip0423_662407 PBMC +5572 CASNTGTASKLTF TRAV29/DV5*01 TRAJ44*01 HLA-A*02:01 B2M MHCI YVLDHLIVV BRLF1 EBV PMID:34811538 tetramer-sort yes amplicon-seq effector T cells T1D T1D_4 chip0423_679449 PBMC +5573 CILPLAGGPRYGQLTF TRAV26-2*01 TRAJ52*01 CASSLGQAYEQYF TRBV7-8*01 TRBJ2-7*01 HLA-B*08:01 B2M MHCI FLRGRAYGL EBNA3A EBV PMID:34811538 tetramer-sort yes amplicon-seq effector memory T cells T1D T1D_4 chip0423_270336 PBMC +5574 SAVRAGAGAPQLVF TRAV8-6*01 TRAJ54*01 HLA-B*08:01 B2M MHCI RAKFKQLL BZLF1 EBV PMID:34811538 tetramer-sort yes amplicon-seq effector memory T cells T1D T1D_4 chip0423_789420 PBMC +5575 CIVREGGGADGLTF TRAV26-1*01 TRAJ45*01 CASSLAVGEGPQHF TRBV7-9*01 TRBJ1-5*01 HLA-B*08:01 B2M MHCI RAKFKQLL BZLF1 EBV PMID:34811538 tetramer-sort yes amplicon-seq effector memory T cells T1D T1D_4 chip0423_585202 PBMC +5576 CILPLAGGTSYGKLTF TRAV26-2*01 TRAJ52*01 CASSLGQAYEQYF TRBV7-8*01 TRBJ2-7*01 HLA-B*08:01 B2M MHCI FLRGRAYGL EBNA3A EBV PMID:34811538 tetramer-sort yes amplicon-seq effector memory T cells T1D T1D_6 chip0423_126579 PBMC +5577 CIVRVGGDSWGELQF TRAV26-1*01 TRAJ24*01 CASSSLNTEAFF TRBV27*01 TRBJ1-1*01 HLA-B*08:01 B2M MHCI RAKFKQLL BZLF1 EBV PMID:34811538 tetramer-sort yes amplicon-seq effector memory T cells T1D T1D_4 chip0423_836963 PBMC +5578 CASSQDYGRGGYTF TRBV4-1*01 TRBJ1-2*01 HLA-B*08:01 B2M MHCI CPLSKILL LMP2A EBV PMID:34811538 tetramer-sort yes amplicon-seq effector memory T cells T1D T1D_6 chip0423_742963 PBMC +5579 CIVREGGGADGLPF TRAV26-1*01 TRAJ45*01 CASSLAVGEGPQHF TRBV7-9*01 TRBJ1-5*01 HLA-B*08:01 B2M MHCI RAKFKQLL BZLF1 EBV PMID:34811538 tetramer-sort yes amplicon-seq effector memory T cells T1D T1D_4 chip0423_242517 PBMC +5580 CASSLAVGEGPQHF TRBV7-9*01 TRBJ1-5*01 HLA-B*08:01 B2M MHCI RAKFKQLL BZLF1 EBV PMID:34811538 tetramer-sort yes amplicon-seq effector memory T cells T1D T1D_4 chip0423_591031 PBMC +5581 CVVRTP*DNAGNMLTF TRAV12-1*01 TRAJ39*01 CASSESPAPGNEKLFF TRBV6-1*01 TRBJ1-4*01 HLA-A*01:01 B2M MHCI STNVGSNTY IAPP HomoSapiens PMID:34811538 tetramer-sort yes amplicon-seq central memory T cells T1D T1D_6 chip0423_331348 PBMC +5583 CAAGALga?ATSQLPF TRAV8-3*01 TRAJ56*01 CAVWRDGAYEQYF TRBV28*01 TRBJ2-7*01 HLA-A*02:01 B2M MHCI YLLEMLWRL LMP1 EBV PMID:34811538 tetramer-sort yes amplicon-seq effector memory T cells T1D T1D_4 chip0423_394653 PBMC +5585 CASSLGQAYEQYF TRBV7-8*01 TRBJ2-7*01 HLA-B*08:01 B2M MHCI FLRGRAYGL EBNA3A EBV PMID:34811538 tetramer-sort yes amplicon-seq effector memory T cells T1D T1D_6 chip0423_571318 PBMC +5586 CIVREGGGAGGLAF TRAV26-1*01 TRAJ45*01 CASSLAVGEGPQHF TRBV7-9*01 TRBJ1-5*01 HLA-B*08:01 B2M MHCI RAKFKQLL BZLF1 EBV PMID:34811538 tetramer-sort yes amplicon-seq effector memory T cells T1D T1D_4 chip0423_357568 PBMC +5587 CAANYGGSQGNLIF TRAV25*01 TRAJ42*01 HLA-A*02:01 B2M MHCI GILGFVFTL M1 InfluenzaA PMID:34811538 tetramer-sort yes amplicon-seq effector T cells T1D T1D_6 chip0423_709388 PBMC +5588 CASSLAVGEGPQHF TRBV7-9*01 TRBJ1-5*01 HLA-B*08:01 B2M MHCI RAKFKQLL BZLF1 EBV PMID:34811538 tetramer-sort yes amplicon-seq effector memory T cells T1D T1D_4 chip0423_119253 PBMC +5589 CASSSLGGYYGYTF TRBV6-1*01 TRBJ1-2*01 HLA-A*02:01 B2M MHCI FLYALALLL LMP2 EBV PMID:34811538 tetramer-sort yes amplicon-seq central memory T cells T1D T1D_4 chip0423_94929 PBMC +5590 CSVPSGNTPLVF TRAV1-2*01 TRAJ29*01 CASSQVNNPGDGYTF TRBV14*01 TRBJ1-2*01 HLA-B*08:01 B2M MHCI QAKWRLQTL EBNA3A EBV PMID:34811538 tetramer-sort yes amplicon-seq effector memory T cells T1D T1D_4 chip0423_107646 PBMC +5591 CAVLQDSNYQLIW TRAV12-2*01,TRAV21*01 TRAJ33*01 CASSDDGMNTEAFF TRBV10-2*01 TRBJ1-1*01 HLA-A*02:01 B2M MHCI CLGGLLTMV LMP2A EBV PMID:34811538 tetramer-sort yes amplicon-seq effector memory T cells T1D T1D_4 chip0423_585018 PBMC +5592 CAATETSYDKVIF TRAV13-1*01 TRAJ50*01 CSVGGNTEAFF TRBV29-1*01 TRBJ1-1*01 HLA-B*08:01 B2M MHCI RAKFKQLL BZLF1 EBV PMID:34811538 tetramer-sort yes amplicon-seq effector memory T cells T1D T1D_5 chip0423_627777 PBMC +5593 CILPLAGGTSYGKLTF TRAV26-2*01 TRAJ52*01 CASSLGQAYEQYF TRBV7-8*01 TRBJ2-7*01 HLA-B*08:01 B2M MHCI FLRGRAYGL EBNA3A EBV PMID:34811538 tetramer-sort yes amplicon-seq effector memory T cells T1D T1D_4 chip0423_21031 PBMC +5595 CAERETSYDKVIF TRAV13-2*01 TRAJ50*01 CASSLLSSYNSPLHF TRBV12-3*01,TRBV12-4*01 TRBJ1-6*01 HLA-B*08:01 B2M MHCI RAKFKQLL BZLF1 EBV PMID:34811538 tetramer-sort yes amplicon-seq effector memory T cells T1D T1D_5 chip0423_790310 PBMC +5596 CASSIRSSYEQYF TRBV19*01 TRBJ2-7*01 HLA-A*02:01 B2M MHCI GILGFVFTL M1 InfluenzaA PMID:34811538 tetramer-sort yes amplicon-seq transitional T cells between effector and memory populations T1D T1D_6 chip0423_324744 PBMC +5597 CASSLVQGYEQYF TRBV7-9*01 TRBJ2-7*01 HLA-B*08:01 B2M MHCI RAKFKQLL BZLF1 EBV PMID:34811538 tetramer-sort yes amplicon-seq effector T cells T1D T1D_5 chip0423_792180 PBMC +5598 CSASRDSYEQYF TRBV20-1*01 TRBJ2-7*01 HLA-A*02:01 B2M MHCI YLLEMLWRL LMP1 EBV PMID:34811538 tetramer-sort yes amplicon-seq central memory T cells T1D T1D_4 chip0423_664254 PBMC +5599 CILPLAGGTSYGKLTF TRAV26-2*01 TRAJ52*01 CASSLGQAYEQYF TRBV7-8*01 TRBJ2-7*01 HLA-B*08:01 B2M MHCI FLRGRAYGL EBNA3A EBV PMID:34811538 tetramer-sort yes amplicon-seq effector memory T cells T1D T1D_6 chip0423_770487 PBMC +5600 CAVNSGNTPLVF TRAV1-2*01 TRAJ29*01 CASSQVNNPGDGYTF TRBV14*01 TRBJ1-2*01 HLA-B*08:01 B2M MHCI QAKWRLQTL EBNA3A EBV PMID:34811538 tetramer-sort yes amplicon-seq effector memory T cells T1D T1D_4 chip0423_874033 PBMC +5601 CSAGRDGTNEKLFF TRBV29-1*01 TRBJ1-4*01 HLA-A*02:01 B2M MHCI GLCTLVAML BLMF1 EBV PMID:34811538 tetramer-sort yes amplicon-seq effector memory T cells T1D T1D_6 chip0423_557350 PBMC +5602 CPVLDTTWTATILF TRAV3*01 TRAJ30*01 CASSLGGGEGASEQFF TRBV7-6*01 TRBJ2-1*01 HLA-B*08:01 B2M MHCI FLRGRAYGL EBNA3A EBV PMID:34811538 tetramer-sort yes amplicon-seq effector memory T cells T1D T1D_4 chip0423_437889 PBMC +5603 CVVNIDNARLMF TRAV12-1*01 TRAJ31*01 CSVGQGPYEQYF TRBV29-1*01 TRBJ2-7*01 HLA-B*08:01 B2M MHCI RAKFKQLL BZLF1 EBV PMID:34811538 tetramer-sort yes amplicon-seq effector memory T cells T1D T1D_4 chip0423_393358 PBMC +5604 CALVNYGGSQGNLIF TRAV19*01 TRAJ42*01 CAVWRDGAYEQYF TRBV28*01 TRBJ2-7*01 HLA-A*02:01 B2M MHCI YLLEMLWRL LMP1 EBV PMID:34811538 tetramer-sort yes amplicon-seq central memory T cells T1D T1D_4 chip0423_456221 PBMC +5605 CIAVTStc??ccGIRFFF TRAV26-1*01 TRAJ49*01 CSAGRDGTNEKLFF TRBV29-1*01 TRBJ1-4*01 HLA-A*02:01 B2M MHCI GLCTLVAML BLMF1 EBV PMID:34811538 tetramer-sort yes amplicon-seq effector memory T cells T1D T1D_6 chip0423_45493 PBMC +5606 CIVSPSPPTGQHFVF TRAV26-1*01 TRAJ26*01 CASRALQGWNSPLHF TRBV19*01 TRBJ1-6*01 HLA-A*02:01 B2M MHCI YVLDHLIVV BRLF1 EBV PMID:34811538 tetramer-sort yes amplicon-seq effector memory T cells T1D T1D_4 chip0423_772321 PBMC +5607 CAGQVAGNNRKLIW TRAV17*01 TRAJ38*01 CASSPRGGQETQYF TRBV7-3*01 TRBJ2-5*01 HLA-B*08:01 B2M MHCI RAKFKQLL BZLF1 EBV PMID:34811538 tetramer-sort yes amplicon-seq effector memory T cells T1D T1D_4 chip0423_537482 PBMC +5608 CAVSDGEGAQKLVF TRAV8-6*01 TRAJ54*01 CASSLTVLAGPNTEAFF TRBV7-3*01 TRBJ1-1*01 HLA-B*08:01 B2M MHCI RAKFKQLL BZLF1 EBV PMID:34811538 tetramer-sort yes amplicon-seq effector memory T cells T1D T1D_4 chip0423_80217 PBMC +5609 CLVTLRFct?CGYHKLIF TRAV12-1*01 TRAJ4*01 CASSLLAGGPRETQYF TRBV28*01 TRBJ2-5*01 HLA-B*08:01 B2M MHCI QAKWRLQTL EBNA3A EBV PMID:34811538 tetramer-sort yes amplicon-seq effector memory T cells T1D T1D_4 chip0423_186734 PBMC +5610 CAARETSYDKVIF TRAV13-1*01 TRAJ50*01 HLA-B*08:01 B2M MHCI RAKFKQLL BZLF1 EBV PMID:34811538 tetramer-sort yes amplicon-seq effector memory T cells T1D T1D_5 chip0423_445141 PBMC +5611 CAAAETSYDKVIF TRAV13-1*01 TRAJ50*01 CASQLAGGTGELFF TRBV24-1*01 TRBJ2-2*01 HLA-B*08:01 B2M MHCI RAKFKQLL BZLF1 EBV PMID:34811538 tetramer-sort yes amplicon-seq effector memory T cells T1D T1D_5 chip0423_877095 PBMC +5612 CALRSGDFNKFYF TRAV19*01 TRAJ21*01 CASSLPLGTGGEITEAFF TRBV28*01 TRBJ1-1*01 HLA-A*02:01 B2M MHCI YLQQNWWTL LMP1 EBV PMID:34811538 tetramer-sort yes amplicon-seq central memory T cells T1D T1D_4 chip0423_812605 PBMC +5613 CILPLAGGTSYGKLTF TRAV26-2*01 TRAJ52*01 CASSLGQAYEQYF TRBV7-8*01 TRBJ2-7*01 HLA-B*08:01 B2M MHCI FLRGRAYGL EBNA3A EBV PMID:34811538 tetramer-sort yes amplicon-seq effector memory T cells T1D T1D_6 chip0423_555790 PBMC +5614 CAVNVDTGNQFYF TRAV8-1*01 TRAJ49*01 CSGLAGAGEQFF TRBV29-1*01 TRBJ2-1*01 HLA-B*08:01 B2M MHCI RAKFKQLL BZLF1 EBV PMID:34811538 tetramer-sort yes amplicon-seq effector memory T cells T1D T1D_4 chip0423_294062 PBMC +5615 CAVNSGNTPLVF TRAV1-2*01 TRAJ29*01 CASSQVNNPGDGYTF TRBV14*01 TRBJ1-2*01 HLA-B*08:01 B2M MHCI QAKWRLQTL EBNA3A EBV PMID:34811538 tetramer-sort yes amplicon-seq effector memory T cells T1D T1D_4 chip0423_434954 PBMC +5616 CASSLGQAYEQYF TRBV7-8*01 TRBJ2-7*01 HLA-B*08:01 B2M MHCI FLRGRAYGL EBNA3A EBV PMID:34811538 tetramer-sort yes amplicon-seq effector memory T cells T1D T1D_4 chip0423_750810 PBMC +5617 CAVRDTTWAAKIIF TRAV3*01 TRAJ30*01 CASSLGGGEGASEQFF TRBV7-6*01 TRBJ2-1*01 HLA-B*08:01 B2M MHCI FLRGRAYGL EBNA3A EBV PMID:34811538 tetramer-sort yes amplicon-seq effector memory T cells T1D T1D_4 chip0423_847015 PBMC +5618 CAVGVGEGAQTLVF TRAV8-6*01 TRAJ54*01 CASSLTVLAGPNTEAFF TRBV7-3*01 TRBJ1-1*01 HLA-B*08:01 B2M MHCI RAKFKQLL BZLF1 EBV PMID:34811538 tetramer-sort yes amplicon-seq effector memory T cells T1D T1D_4 chip0423_44871 PBMC +5619 CAASEGNEKLTF TRAV13-1*01 TRAJ48*01 CASSLNGLDEQYF TRBV7-3*01 TRBJ2-7*01 HLA-B*08:01 B2M MHCI RAKFKQLL BZLF1 EBV PMID:34811538 tetramer-sort yes amplicon-seq effector memory T cells T1D T1D_4 chip0423_492408 PBMC +5620 CASSEWELNYGYTF TRBV25-1*01 TRBJ1-2*01 HLA-A*02:01 B2M MHCI YVLDHLIVV BRLF1 EBV PMID:34811538 tetramer-sort yes amplicon-seq effector memory T cells T1D T1D_4 chip0423_568927 PBMC +5621 CALSDYGNQFYF TRAV9-2*01 TRAJ49*01 CASSSLAGVREQYF TRBV27*01 TRBJ2-7*01 HLA-B*08:01 B2M MHCI QAKWRLQTL EBNA3A EBV PMID:34811538 tetramer-sort yes amplicon-seq effector memory T cells T1D T1D_4 chip0423_718812 PBMC +5622 CAVGENYGQHFVF TRAV21*01 TRAJ26*01 CASLPTPHSDSGNSNTEAFF TRBV5-1*01 TRBJ1-1*01 HLA-B*08:01 B2M MHCI RAKFKQLL BZLF1 EBV PMID:34811538 tetramer-sort yes amplicon-seq effector memory T cells T1D T1D_4 chip0423_652547 PBMC +5623 CAVSDGEGAQKLVF TRAV8-6*01 TRAJ54*01 CASSLTVLAGPNTEAFF TRBV7-3*01 TRBJ1-1*01 HLA-B*08:01 B2M MHCI RAKFKQLL BZLF1 EBV PMID:34811538 tetramer-sort yes amplicon-seq effector memory T cells T1D T1D_4 chip0423_306252 PBMC +5624 CAMRESMEYGNKLVF TRAV14/DV4*01 TRAJ47*01 CASSLLRGTDTQYF TRBV27*01 TRBJ2-3*01 HLA-B*08:01 B2M MHCI RPIIRPATL NP InfluenzaA PMID:34811538 tetramer-sort yes amplicon-seq Naive T cells T1D T1D_4 chip0423_837901 PBMC +5625 CASSLVVSHGELFF TRBV7-2*01 TRBJ2-2*01 HLA-B*08:01 B2M MHCI RAKFKQLL BZLF1 EBV PMID:34811538 tetramer-sort yes amplicon-seq effector memory T cells T1D T1D_4 chip0423_48483 PBMC +5626 CIVREGGGADRLPF TRAV26-1*01 TRAJ45*01 CASSLAVGEGPQHF TRBV7-9*01 TRBJ1-5*01 HLA-B*08:01 B2M MHCI RAKFKQLL BZLF1 EBV PMID:34811538 tetramer-sort yes amplicon-seq effector memory T cells T1D T1D_4 chip0423_719777 PBMC +5627 CAVNSYTNNDMRF TRAV12-2*01 TRAJ43*01 CASSLANREEKLFF TRBV5-1*01 TRBJ1-4*01 HLA-B*08:01 B2M MHCI MALWMRLL INS HomoSapiens PMID:34811538 tetramer-sort yes amplicon-seq Naive T cells T1D T1D_5 chip0423_662206 PBMC +5628 CASSPLGSNEKLFF TRBV7-9*01 TRBJ1-4*01 HLA-B*08:01 B2M MHCI RAKFKQLL BZLF1 EBV PMID:34811538 tetramer-sort yes amplicon-seq effector memory T cells T1D T1D_5 chip0423_180638 PBMC +5629 CILPLAGGTSYGKLTF TRAV26-2*01 TRAJ52*01 CASSLGQAYEQYF TRBV7-8*01 TRBJ2-7*01 HLA-B*08:01 B2M MHCI FLRGRAYGL EBNA3A EBV PMID:34811538 tetramer-sort yes amplicon-seq effector T cells T1D T1D_6 chip0423_462665 PBMC +5630 CAVSRIPg?cTASKLTF TRAV8-1*01 TRAJ44*01 CASSQGQAYEQYF TRBV7-8*01 TRBJ2-7*01 HLA-B*08:01 B2M MHCI FLRGRAYGL EBNA3A EBV PMID:34811538 tetramer-sort yes amplicon-seq effector memory T cells T1D T1D_4 chip0423_354166 PBMC +5631 CANSLGGGEGASEQFF TRBV7-6*01 TRBJ2-1*01 HLA-B*08:01 B2M MHCI FLRGRAYGL EBNA3A EBV PMID:34811538 tetramer-sort yes amplicon-seq effector memory T cells T1D T1D_4 chip0423_470232 PBMC +5632 CASSQVIPPGEGYTF TRBV14*01 TRBJ1-2*01 HLA-B*08:01 B2M MHCI QAKWRLQTL EBNA3A EBV PMID:34811538 tetramer-sort yes amplicon-seq effector memory T cells T1D T1D_4 chip0423_456954 PBMC +5633 CIVREGGGADGLPF TRAV26-1*01 TRAJ45*01 CASSLAVGEGPQHF TRBV7-9*01 TRBJ1-5*01 HLA-B*08:01 B2M MHCI RAKFKQLL BZLF1 EBV PMID:34811538 tetramer-sort yes amplicon-seq effector memory T cells T1D T1D_4 chip0423_138063 PBMC +5634 CIVREGGGADGLTF TRAV26-1*01 TRAJ45*01 CASSLAVGEGPQHF TRBV7-9*01 TRBJ1-5*01 HLA-B*08:01 B2M MHCI RAKFKQLL BZLF1 EBV PMID:34811538 tetramer-sort yes amplicon-seq effector T cells T1D T1D_4 chip0423_835378 PBMC +5635 CASSDIREGQGEAFF TRBV10-2*01 TRBJ1-1*01 HLA-B*08:01 B2M MHCI QAKWRLQTL EBNA3A EBV PMID:34811538 tetramer-sort yes amplicon-seq transitional T cells between effector and memory populations T1D T1D_6 chip0423_710186 PBMC +5636 CILPLAGGTSYGKPTF TRAV26-2*01 TRAJ52*01 CASSLGQAYEQYF TRBV7-8*01 TRBJ2-7*01 HLA-B*08:01 B2M MHCI FLRGRAYGL EBNA3A EBV PMID:34811538 tetramer-sort yes amplicon-seq effector memory T cells T1D T1D_6 chip0423_29891 PBMC +5637 CIVREGGGADGLTF TRAV26-1*01 TRAJ45*01 CASSLAVGEGPQHF TRBV7-9*01 TRBJ1-5*01 HLA-B*08:01 B2M MHCI RAKFKQLL BZLF1 EBV PMID:34811538 tetramer-sort yes amplicon-seq effector memory T cells T1D T1D_4 chip0423_76303 PBMC +5638 CAVSSYGQNFVF TRAV1-2*01 TRAJ26*01 CASSFSRGRAGYEQYF TRBV28*01 TRBJ2-7*01 HLA-B*08:01 B2M MHCI MAALPRLIAF GAD2 HomoSapiens PMID:34811538 tetramer-sort yes amplicon-seq Naive T cells T1D T1D_4 chip0423_385613 PBMC +5639 CIVCGGGGADGLTF TRAV26-1*01 TRAJ45*01 CASSLAVGEGPQHF TRBV7-9*01 TRBJ1-5*01 HLA-B*08:01 B2M MHCI RAKFKQLL BZLF1 EBV PMID:34811538 tetramer-sort yes amplicon-seq effector memory T cells T1D T1D_4 chip0423_97292 PBMC +5640 CAVHIFNKFYF TRAV20*01 TRAJ21*01 CASSQVSEDTEAFF TRBV4-2*01 TRBJ1-1*01 HLA-A*01:01 B2M MHCI GSHLVEALY INS HomoSapiens PMID:34811538 tetramer-sort yes amplicon-seq Naive T cells T1D T1D_5 chip0423_161438 PBMC +5641 CILPLAGGTSYGKLTF TRAV26-2*01 TRAJ52*01 CASSLGQAYEQYF TRBV7-8*01 TRBJ2-7*01 HLA-B*08:01 B2M MHCI FLRGRAYGL EBNA3A EBV PMID:34811538 tetramer-sort yes amplicon-seq effector memory T cells T1D T1D_6 chip0423_612222 PBMC +5642 CASSRIPGQGARPDPNTGELFF TRBV28*01 TRBJ2-2*01 HLA-A*02:01 B2M MHCI CLGGLLTMV LMP2A EBV PMID:34811538 tetramer-sort yes amplicon-seq effector memory T cells T1D T1D_4 chip0423_647626 PBMC +5643 CILPLAGGTSYGKLTF TRAV26-2*01 TRAJ52*01 CASSLGQAYEQYF TRBV7-8*01 TRBJ2-7*01 HLA-B*08:01 B2M MHCI FLRGRAYGL EBNA3A EBV PMID:34811538 tetramer-sort yes amplicon-seq effector memory T cells T1D T1D_6 chip0423_331491 PBMC +5644 CILRDSAGGTSYGKLTF TRAV26-2*01 TRAJ52*01 CASNHGRGFQETQYF TRBV4-3*01 TRBJ2-5*01 HLA-B*08:01 B2M MHCI FLRGRAYGL EBNA3A EBV PMID:34811538 tetramer-sort yes amplicon-seq effector memory T cells T1D T1D_6 chip0423_322297 PBMC +5645 CAVYSGGGADGLTF TRAV12-2*01 TRAJ45*01 CASSYGYEQYF TRBV6-1*01 TRBJ2-7*01 HLA-A*02:01 B2M MHCI ILSAHVATA ZNT8 HomoSapiens PMID:34811538 tetramer-sort yes amplicon-seq Naive T cells T1D T1D_4 chip0423_623239 PBMC +5647 CASSDRGGYEQYF TRBV19*01 TRBJ2-7*01 HLA-A*02:01 B2M MHCI GILGFVFTL M1 InfluenzaA PMID:34811538 tetramer-sort yes amplicon-seq effector T cells T1D T1D_6 chip0423_873219 PBMC +5648 CIVREGGGADGLPF TRAV26-1*01 TRAJ45*01 CASSLAVGEGPQHF TRBV7-9*01 TRBJ1-5*01 HLA-B*08:01 B2M MHCI RAKFKQLL BZLF1 EBV PMID:34811538 tetramer-sort yes amplicon-seq effector T cells T1D T1D_4 chip0423_32314 PBMC +5649 CIVREGGGADGLTF TRAV26-1*01 TRAJ45*01 CASSLAVGEGPQHF TRBV7-9*01 TRBJ1-5*01 HLA-B*08:01 B2M MHCI RAKFKQLL BZLF1 EBV PMID:34811538 tetramer-sort yes amplicon-seq effector memory T cells T1D T1D_4 chip0423_82720 PBMC +5650 CAATETSYDKVIF TRAV13-1*01 TRAJ50*01 CASSPLGSNEKLFF TRBV7-9*01 TRBJ1-4*01 HLA-B*08:01 B2M MHCI RAKFKQLL BZLF1 EBV PMID:34811538 tetramer-sort yes amplicon-seq effector memory T cells T1D T1D_5 chip0423_620375 PBMC +5651 CILPLAGGTSYGKLTF TRAV26-2*01 TRAJ52*01 CASSLGQAYEQYF TRBV7-8*01 TRBJ2-7*01 HLA-B*08:01 B2M MHCI FLRGRAYGL EBNA3A EBV PMID:34811538 tetramer-sort yes amplicon-seq effector memory T cells T1D T1D_6 chip0423_38828 PBMC +5653 CIVTKGGGADALTF TRAV26-1*01 TRAJ45*01 CASSLAVGEGPQHF TRBV7-9*01 TRBJ1-5*01 HLA-B*08:01 B2M MHCI RAKFKQLL BZLF1 EBV PMID:34811538 tetramer-sort yes amplicon-seq effector T cells T1D T1D_4 chip0423_38685 PBMC +5654 CILPLAGGTSYGKLTF TRAV26-2*01 TRAJ52*01 CASSLGQAYEQYF TRBV7-8*01 TRBJ2-7*01 HLA-B*08:01 B2M MHCI FLRGRAYGL EBNA3A EBV PMID:34811538 tetramer-sort yes amplicon-seq effector memory T cells T1D T1D_6 chip0423_213026 PBMC +5655 CAANSGGNTPLVF TRAV12-2*01 TRAJ29*01 CAISETRQYSYEQYF TRBV10-3*01 TRBJ2-7*01 HLA-B*08:01 B2M MHCI RAKFKQLL BZLF1 EBV PMID:34811538 tetramer-sort yes amplicon-seq effector memory T cells T1D T1D_5 chip0423_26343 PBMC +5656 CILPLAGGTSYGKLTF TRAV26-2*01 TRAJ52*01 CASSLGQAYEQYF TRBV7-8*01 TRBJ2-7*01 HLA-B*08:01 B2M MHCI FLRGRAYGL EBNA3A EBV PMID:34811538 tetramer-sort yes amplicon-seq effector memory T cells T1D T1D_6 chip0423_852522 PBMC +5657 CASSLGQAYEQYF TRBV7-8*01 TRBJ2-7*01 HLA-B*08:01 B2M MHCI FLRGRAYGL EBNA3A EBV PMID:34811538 tetramer-sort yes amplicon-seq effector memory T cells T1D T1D_6 chip0423_328478 PBMC +5658 CAVGGF TRAV39*01 TRAJ37*01,TRAJ11*01 CASRANSLYEQYF TRBV2*01 TRBJ2-7*01 HLA-A*01:01 B2M MHCI HSNLNDATY NP InfluenzaA PMID:34811538 tetramer-sort yes amplicon-seq effector memory T cells T1D T1D_6 chip0423_59261 PBMC +5659 CAVEDQGRSYNTDKLIF TRAV2*01 TRAJ34*01 CASSLNVGEGAGNTIYF TRBV7-6*01 TRBJ1-3*01 HLA-B*08:01 B2M MHCI RAKFKQLL BZLF1 EBV PMID:34811538 tetramer-sort yes amplicon-seq effector memory T cells healthy healthy_4 chip0423_219763 PBMC +5660 *AVNLRAGNNHRLVW TRAV8-1*01 TRAJ38*01 CASSLGQAYEQYF TRBV7-8*01 TRBJ2-7*01 HLA-B*08:01 B2M MHCI FLRGRAYGL EBNA3A EBV PMID:34811538 tetramer-sort yes amplicon-seq effector memory T cells T1D T1D_6 chip0423_653602 PBMC +5661 CAVLMEYGNKLVF TRAV12-2*01 TRAJ47*01 CASSWTGGITEAFF TRBV27*01 TRBJ1-1*01 HLA-B*08:01 B2M MHCI RAKFKQLL BZLF1 EBV PMID:34811538 tetramer-sort yes amplicon-seq effector memory T cells T1D T1D_4 chip0423_574787 PBMC +5662 CIVREGGGADGLTF TRAV26-1*01 TRAJ45*01 HLA-B*08:01 B2M MHCI RAKFKQLL BZLF1 EBV PMID:34811538 tetramer-sort yes amplicon-seq effector memory T cells T1D T1D_4 chip0423_730455 PBMC +5663 CIIRAGGGSDGLTF TRAV26-1*01 TRAJ45*01 CASSLAVGEGPQHF TRBV7-9*01 TRBJ1-5*01 HLA-B*08:01 B2M MHCI RAKFKQLL BZLF1 EBV PMID:34811538 tetramer-sort yes amplicon-seq effector memory T cells T1D T1D_4 chip0423_224541 PBMC +5664 CILPLAGGTSYGKLTF TRAV26-2*01 TRAJ52*01 CASSLGQAYEQYF TRBV7-8*01 TRBJ2-7*01 HLA-B*08:01 B2M MHCI FLRGRAYGL EBNA3A EBV PMID:34811538 tetramer-sort yes amplicon-seq effector memory T cells T1D T1D_6 chip0423_846961 PBMC +5665 CASSLAVGEGPQHF TRBV7-9*01 TRBJ1-5*01 HLA-B*08:01 B2M MHCI RAKFKQLL BZLF1 EBV PMID:34811538 tetramer-sort yes amplicon-seq effector memory T cells T1D T1D_4 chip0423_598834 PBMC +5666 CAANYGGSQGNLIF TRAV25*01 TRAJ42*01 CASSMRSTDTQYF TRBV19*01 TRBJ2-3*01 HLA-A*02:01 B2M MHCI GILGFVFTL M1 InfluenzaA PMID:34811538 tetramer-sort yes amplicon-seq transitional T cells between effector and memory populations T1D T1D_6 chip0423_221459 PBMC +5667 CAVPATDKLIF TRAV8-1*01 TRAJ34*01 CASSEWELNHGYTF TRBV25-1*01 TRBJ1-2*01 HLA-A*02:01 B2M MHCI YVLDHLIVV BRLF1 EBV PMID:34811538 tetramer-sort yes amplicon-seq effector memory T cells T1D T1D_4 chip0423_793923 PBMC +5668 CIAVTStc??ccGNQFSF TRAV26-1*01 TRAJ49*01 CSAGRDGTNEKLFF TRBV29-1*01 TRBJ1-4*01 HLA-A*02:01 B2M MHCI GLCTLVAML BLMF1 EBV PMID:34811538 tetramer-sort yes amplicon-seq effector memory T cells T1D T1D_6 chip0423_553531 PBMC +5669 CIVREGGGADGLTF TRAV26-1*01 TRAJ45*01 CASSLAVGEGPQHF TRBV7-9*01 TRBJ1-5*01 HLA-B*08:01 B2M MHCI RAKFKQLL BZLF1 EBV PMID:34811538 tetramer-sort yes amplicon-seq effector memory T cells T1D T1D_4 chip0423_630820 PBMC +5670 CAGSRTDKLIF TRAV27*01 TRAJ34*01 CASSSTGGGDQPQHF TRBV7-9*01 TRBJ1-5*01 HLA-B*08:01 B2M MHCI RAKFKQLL BZLF1 EBV PMID:34811538 tetramer-sort yes amplicon-seq effector memory T cells T1D T1D_4 chip0423_511379 PBMC +5671 CASSLGQAYEQYF TRBV7-8*01 TRBJ2-7*01 HLA-B*08:01 B2M MHCI FLRGRAYGL EBNA3A EBV PMID:34811538 tetramer-sort yes amplicon-seq effector memory T cells T1D T1D_6 chip0423_365374 PBMC +5672 CASSPLLGDNQFYGYTF TRBV7-6*01 TRBJ1-2*01 HLA-B*08:01 B2M MHCI RAKFKQLL BZLF1 EBV PMID:34811538 tetramer-sort yes amplicon-seq transitional T cells between effector and memory populations T1D T1D_6 chip0423_119572 PBMC +5673 CAVTPITGGGNKLTF TRAV8-4*01 TRAJ10*01 CASNLVGGEEEQYF TRBV5-1*01 TRBJ2-7*01 HLA-B*08:01 B2M MHCI RAKFKQLL BZLF1 EBV PMID:34811538 tetramer-sort yes amplicon-seq effector T cells T1D T1D_5 chip0423_718957 PBMC +5674 CASSLGQAYEQYF TRBV7-8*01 TRBJ2-7*01 HLA-B*08:01 B2M MHCI FLRGRAYGL EBNA3A EBV PMID:34811538 tetramer-sort yes amplicon-seq effector memory T cells T1D T1D_6 chip0423_726657 PBMC +5675 CILPLAGGTSYGKLTF TRAV26-2*01 TRAJ52*01 CASSLGQAYEQYF TRBV7-8*01 TRBJ2-7*01 HLA-B*08:01 B2M MHCI FLRGRAYGL EBNA3A EBV PMID:34811538 tetramer-sort yes amplicon-seq effector memory T cells T1D T1D_6 chip0423_534178 PBMC +5676 CAVGTMAct?SNTGKLIF TRAV8-3*01 TRAJ37*01 HLA-B*08:01 B2M MHCI ELRSRYWAI NP InfluenzaA PMID:34811538 tetramer-sort yes amplicon-seq transitional T cells between effector and memory populations T1D T1D_6 chip0423_366371 PBMC +5677 CILPLAGGTSYGKLTF TRAV26-2*01 TRAJ52*01 CASSLGQAYEQYF TRBV7-8*01 TRBJ2-7*01 HLA-B*08:01 B2M MHCI FLRGRAYGL EBNA3A EBV PMID:34811538 tetramer-sort yes amplicon-seq effector memory T cells T1D T1D_6 chip0423_255297 PBMC +5678 CILPLAGGTSYGKLTF TRAV26-2*01 TRAJ52*01 CASSLGQAYEQYF TRBV7-8*01 TRBJ2-7*01 HLA-B*08:01 B2M MHCI FLRGRAYGL EBNA3A EBV PMID:34811538 tetramer-sort yes amplicon-seq effector memory T cells T1D T1D_6 chip0423_680854 PBMC +5679 CAASETSYDKVIF TRAV13-1*01 TRAJ50*01 CASSSLGQRETQYF TRBV7-9*01 TRBJ2-5*01 HLA-B*08:01 B2M MHCI RAKFKQLL BZLF1 EBV PMID:34811538 tetramer-sort yes amplicon-seq effector memory T cells T1D T1D_5 chip0423_534348 PBMC +5680 CAVNAFSGGYNKLIF TRAV8-1*01 TRAJ4*01 CASSQEDSRWEQFF TRBV14*01 TRBJ2-1*01 HLA-A*02:01 B2M MHCI YLLEMLWRL LMP1 EBV PMID:34811538 tetramer-sort yes amplicon-seq central memory T cells T1D T1D_4 chip0423_67100 PBMC +5681 CASSDIREGQGEAFF TRBV10-2*01 TRBJ1-1*01 HLA-B*08:01 B2M MHCI QAKWRLQTL EBNA3A EBV PMID:34811538 tetramer-sort yes amplicon-seq central memory T cells T1D T1D_6 chip0423_95526 PBMC +5683 CALVNYGGSQGNLIF TRAV19*01 TRAJ42*01 CAVWRDGAYEQYF TRBV28*01 TRBJ2-7*01 HLA-A*02:01 B2M MHCI YLLEMLWRL LMP1 EBV PMID:34811538 tetramer-sort yes amplicon-seq effector memory T cells T1D T1D_4 chip0423_242592 PBMC +5684 CTARETSYDKVIF TRAV13-1*01 TRAJ50*01 CASTNLGGFTDTQYF TRBV7-9*01 TRBJ2-3*01 HLA-B*08:01 B2M MHCI RAKFKQLL BZLF1 EBV PMID:34811538 tetramer-sort yes amplicon-seq effector T cells T1D T1D_5 chip0423_371277 PBMC +5685 CASQGGSQGNLIF TRAV20*01 TRAJ42*01 CASSLGGQTETQYF TRBV13*01 TRBJ2-5*01 HLA-A*02:01 B2M MHCI TLLANVTAV VP6 RotavirusA PMID:34811538 tetramer-sort yes amplicon-seq transitional T cells between effector and memory populations T1D T1D_6 chip0423_556617 PBMC +5686 CLLPLAGGTGYGKLTF TRAV26-2*01 TRAJ52*01 CASSLGQAYEQYF TRBV7-8*01 TRBJ2-7*01 HLA-B*08:01 B2M MHCI FLRGRAYGL EBNA3A EBV PMID:34811538 tetramer-sort yes amplicon-seq effector memory T cells T1D T1D_4 chip0423_765116 PBMC +5687 CAVSDGEGAQKLVF TRAV8-6*01 TRAJ54*01 CASSLTVLAGPNTEAFF TRBV7-3*01 TRBJ1-1*01 HLA-B*08:01 B2M MHCI RAKFKQLL BZLF1 EBV PMID:34811538 tetramer-sort yes amplicon-seq effector memory T cells T1D T1D_4 chip0423_175286 PBMC +5688 RASSLLASEGGGYEQYF TRBV28*01 TRBJ2-7*01 HLA-B*08:01 B2M MHCI QAKWRLQTL EBNA3A EBV PMID:34811538 tetramer-sort yes amplicon-seq effector memory T cells T1D T1D_4 chip0423_148540 PBMC +5689 CATILSTGGFKTIS TRAV17*01 TRAJ9*01 CASSLGPAGVYGYTF TRBV12-3*01,TRBV12-4*01 TRBJ1-2*01 HLA-A*02:01 B2M MHCI ALGIGILTV MART1 HomoSapiens PMID:34811538 tetramer-sort yes amplicon-seq Naive T cells T1D T1D_4 chip0423_830404 PBMC +5690 CASSLGQAYEQYL TRBV7-8*01 TRBJ2-7*01 HLA-B*08:01 B2M MHCI FLRGRAYGL EBNA3A EBV PMID:34811538 tetramer-sort yes amplicon-seq effector memory T cells T1D T1D_6 chip0423_813674 PBMC +5691 CASSQVNNPGDGYTF TRBV14*01 TRBJ1-2*01 HLA-B*08:01 B2M MHCI QAKWRLQTL EBNA3A EBV PMID:34811538 tetramer-sort yes amplicon-seq effector memory T cells T1D T1D_4 chip0423_526052 PBMC +5692 FASSLGLPYEQYF TRBV7-8*01 TRBJ2-7*01 HLA-B*08:01 B2M MHCI FLRGRAYGL EBNA3A EBV PMID:34811538 tetramer-sort yes amplicon-seq effector memory T cells T1D T1D_6 chip0423_582040 PBMC +5693 CIVREGGGADGLTF TRAV26-1*01 TRAJ45*01 CASSLAVGEGPQHF TRBV7-9*01 TRBJ1-5*01 HLA-B*08:01 B2M MHCI RAKFKQLL BZLF1 EBV PMID:34811538 tetramer-sort yes amplicon-seq effector memory T cells T1D T1D_4 chip0423_23890 PBMC +5694 CAATETSYDKVIF TRAV13-1*01 TRAJ50*01 CASSRLGTEETQYF TRBV7-9*01 TRBJ2-5*01 HLA-B*08:01 B2M MHCI RAKFKQLL BZLF1 EBV PMID:34811538 tetramer-sort yes amplicon-seq effector memory T cells T1D T1D_5 chip0423_830628 PBMC +5695 CSAGRDGTNEKLFF TRBV29-1*01 TRBJ1-4*01 HLA-A*02:01 B2M MHCI GLCTLVAML BLMF1 EBV PMID:34811538 tetramer-sort yes amplicon-seq effector memory T cells T1D T1D_6 chip0423_840135 PBMC +5696 CILPLAGGTSYGKLTF TRAV26-2*01 TRAJ52*01 CASSLGQAYEQYF TRBV7-8*01 TRBJ2-7*01 HLA-B*08:01 B2M MHCI FLRGRAYGL EBNA3A EBV PMID:34811538 tetramer-sort yes amplicon-seq effector T cells T1D T1D_6 chip0423_281942 PBMC +5697 CAEEGSQGNLIF TRAV5*01 TRAJ42*01 CASSPRSNIEQFF TRBV19*01 TRBJ2-1*01 HLA-A*02:01 B2M MHCI GILGFVFTL M1 InfluenzaA PMID:34811538 tetramer-sort yes amplicon-seq transitional T cells between effector and memory populations T1D T1D_4 chip0423_741968 PBMC +5698 CAASETSYDKVIF TRAV13-1*01 TRAJ50*01 CSVGTGGTNEKLFF TRBV29-1*01 TRBJ1-4*01 HLA-A*02:01 B2M MHCI GLCTLVAML BLMF1 EBV PMID:34811538 tetramer-sort yes amplicon-seq effector T cells T1D T1D_6 chip0423_244091 PBMC +5699 CAMREGENNARLMF TRAV14/DV4*01 TRAJ31*01 CSVASLWGYTF TRBV29-1*01 TRBJ1-2*01 HLA-A*01:01 B2M MHCI HSNLNDATY NP InfluenzaA PMID:34811538 tetramer-sort yes amplicon-seq effector memory T cells T1D T1D_4 chip0423_32668 PBMC +5700 CSAGRDGTNEKLFF TRBV29-1*01 TRBJ1-4*01 HLA-A*02:01 B2M MHCI GLCTLVAML BLMF1 EBV PMID:34811538 tetramer-sort yes amplicon-seq effector memory T cells T1D T1D_6 chip0423_254894 PBMC +5701 CAVASGHPPLVF TRAV1-2*01 TRAJ29*01 CASSQVNNPGDGYTF TRBV14*01 TRBJ1-2*01 HLA-B*08:01 B2M MHCI QAKWRLQTL EBNA3A EBV PMID:34811538 tetramer-sort yes amplicon-seq effector memory T cells T1D T1D_4 chip0423_260250 PBMC +5702 CAGFPWAAGNKLTF TRAV25*01 TRAJ17*01 HLA-A*01:01 B2M MHCI CTELKLSDY NP InfluenzaA PMID:34811538 tetramer-sort yes amplicon-seq transitional T cells between effector and memory populations T1D T1D_5 chip0423_103374 PBMC +5703 CAETETSYDKVIF TRAV13-2*01 TRAJ50*01 CASSFTSGTDPELFF TRBV7-9*01 TRBJ2-2*01 HLA-B*08:01 B2M MHCI RAKFKQLL BZLF1 EBV PMID:34811538 tetramer-sort yes amplicon-seq effector T cells T1D T1D_5 chip0423_725438 PBMC +5704 CASSLGQAYEQYF TRBV7-8*01 TRBJ2-7*01 HLA-B*08:01 B2M MHCI FLRGRAYGL EBNA3A EBV PMID:34811538 tetramer-sort yes amplicon-seq effector memory T cells T1D T1D_6 chip0423_651774 PBMC +5705 CIVREGGGADGLPF TRAV26-1*01 TRAJ45*01 HLA-B*08:01 B2M MHCI RAKFKQLL BZLF1 EBV PMID:34811538 tetramer-sort yes amplicon-seq effector memory T cells T1D T1D_4 chip0423_425228 PBMC +5706 CILPLAGGTSYGKLTF TRAV26-2*01 TRAJ52*01 CASSLGQAYEQYF TRBV7-8*01 TRBJ2-7*01 HLA-B*08:01 B2M MHCI FLRGRAYGL EBNA3A EBV PMID:34811538 tetramer-sort yes amplicon-seq effector memory T cells T1D T1D_6 chip0423_238768 PBMC +5707 CILPLAGGTSYGKLTF TRAV26-2*01 TRAJ52*01 CASSLGQAYEQYF TRBV7-8*01 TRBJ2-7*01 HLA-B*08:01 B2M MHCI FLRGRAYGL EBNA3A EBV PMID:34811538 tetramer-sort yes amplicon-seq effector memory T cells T1D T1D_6 chip0423_619101 PBMC +5708 CAASETSYDKVIF TRAV13-1*01 TRAJ50*01 CASSFTGSSGNTIYF TRBV12-3*01,TRBV12-4*01 TRBJ1-3*01 HLA-B*08:01 B2M MHCI RAKFKQLL BZLF1 EBV PMID:34811538 tetramer-sort yes amplicon-seq effector memory T cells T1D T1D_5 chip0423_266181 PBMC +5709 CILPLAGGTSYGKLTF TRAV26-2*01 TRAJ52*01 CASSLGQAYEQYF TRBV7-8*01 TRBJ2-7*01 HLA-B*08:01 B2M MHCI FLRGRAYGL EBNA3A EBV PMID:34811538 tetramer-sort yes amplicon-seq effector T cells T1D T1D_6 chip0423_789933 PBMC +5710 CAASDRLPGGSYIPTF TRAV13-1*01 TRAJ6*01 CSATNQYDGPDTEAFF TRBV20-1*01 TRBJ1-1*01 HLA-B*08:01 B2M MHCI RAKFKQLL BZLF1 EBV PMID:34811538 tetramer-sort yes amplicon-seq effector memory T cells T1D T1D_4 chip0423_748837 PBMC +5711 CVLPLAGGPRSGQLTF TRAV26-2*01 TRAJ52*01 CASSLGQAYEQYF TRBV7-8*01 TRBJ2-7*01 HLA-B*08:01 B2M MHCI FLRGRAYGL EBNA3A EBV PMID:34811538 tetramer-sort yes amplicon-seq effector memory T cells T1D T1D_6 chip0423_590748 PBMC +5712 CAVITRDSNYQLIW TRAV21*01 TRAJ33*01 CASSYSGNQPQHF TRBV6-5*01 TRBJ1-5*01 HLA-A*01:01 B2M MHCI CTELKLSDY NP InfluenzaA PMID:34811538 tetramer-sort yes amplicon-seq Naive T cells T1D T1D_5 chip0423_444061 PBMC +5713 CILPLAGGTSYGKLTF TRAV26-2*01 TRAJ52*01 CASSLGQAYEQYF TRBV7-8*01 TRBJ2-7*01 HLA-B*08:01 B2M MHCI FLRGRAYGL EBNA3A EBV PMID:34811538 tetramer-sort yes amplicon-seq effector memory T cells T1D T1D_6 chip0423_662638 PBMC +5714 CVVMGPGGGSYIPTF TRAV12-1*01 TRAJ6*01 CASSESIGYEQYF TRBV10-2*01 TRBJ2-7*01 HLA-A*01:01 B2M MHCI LTSLTILQLY G6PC2 HomoSapiens PMID:34811538 tetramer-sort yes amplicon-seq transitional T cells between effector and memory populations T1D T1D_5 chip0423_338461 PBMC +5715 CAASETSYDKVIF TRAV13-1*01 TRAJ50*01 CASSWLGDRYNSPLHF TRBV7-9*01 TRBJ1-6*01 HLA-B*08:01 B2M MHCI RAKFKQLL BZLF1 EBV PMID:34811538 tetramer-sort yes amplicon-seq effector T cells T1D T1D_5 chip0423_810508 PBMC +5716 CILPLAGGTSYGKLTF TRAV26-2*01 TRAJ52*01 CASSLWQGYEQYF TRBV5-1*01 TRBJ2-7*01 HLA-B*08:01 B2M MHCI FLRGRAYGL EBNA3A EBV PMID:34811538 tetramer-sort yes amplicon-seq effector memory T cells T1D T1D_6 chip0423_345891 PBMC +5717 CILPLAGGTSYGKLTF TRAV26-2*01 TRAJ52*01 CASSLGQAYEQYF TRBV7-8*01 TRBJ2-7*01 HLA-B*08:01 B2M MHCI FLRGRAYGL EBNA3A EBV PMID:34811538 tetramer-sort yes amplicon-seq effector memory T cells T1D T1D_6 chip0423_10696 PBMC +5718 CASQGGSQGNLIF TRAV20*01 TRAJ42*01 CASSLGGQTETQYF TRBV13*01 TRBJ2-5*01 HLA-A*02:01 B2M MHCI TLLANVTAV VP6 RotavirusA PMID:34811538 tetramer-sort yes amplicon-seq transitional T cells between effector and memory populations T1D T1D_6 chip0423_281674 PBMC +5719 CSAGRDGTNEKLFF TRBV29-1*01 TRBJ1-4*01 HLA-A*02:01 B2M MHCI GLCTLVAML BLMF1 EBV PMID:34811538 tetramer-sort yes amplicon-seq effector T cells T1D T1D_6 chip0423_442122 PBMC +5720 CVDPMDTGRRALTF TRAV12-1*01 TRAJ5*01 CASNDYSNEQFF TRBV19*01 TRBJ2-1*01 HLA-A*02:01 B2M MHCI LLAGIGTVPI PGT HomoSapiens PMID:34811538 tetramer-sort yes amplicon-seq Naive T cells T1D T1D_6 chip0423_335752 PBMC +5721 CAVSPDNAGNNRKLIW TRAV12-2*01 TRAJ38*01 CASITGTATANYGYTF TRBV19*01 TRBJ1-2*01 HLA-A*02:01 B2M MHCI GILGFVFTL M1 InfluenzaA PMID:34811538 tetramer-sort yes amplicon-seq transitional T cells between effector and memory populations T1D T1D_6 chip0423_652969 PBMC +5722 CAATETSYDKVIF TRAV13-1*01 TRAJ50*01 CASSPPGRNEKLFF TRBV12-3*01,TRBV12-4*01 TRBJ1-4*01 HLA-B*08:01 B2M MHCI RAKFKQLL BZLF1 EBV PMID:34811538 tetramer-sort yes amplicon-seq effector T cells T1D T1D_5 chip0423_835120 PBMC +5723 CAVIQTGANNLFF TRAV2*01 TRAJ36*01 CASSVSGAPYEQYF TRBV9*01 TRBJ2-7*01 HLA-B*08:01 B2M MHCI FLRGRAYGL EBNA3A EBV PMID:34811538 tetramer-sort yes amplicon-seq effector T cells T1D T1D_6 chip0423_500231 PBMC +5724 CASSLGGQTETQYF TRBV13*01 TRBJ2-5*01 HLA-A*02:01 B2M MHCI TLLANVTAV VP6 RotavirusA PMID:34811538 tetramer-sort yes amplicon-seq transitional T cells between effector and memory populations T1D T1D_6 chip0423_837966 PBMC +5725 CAAAETFYDKVIF TRAV13-1*01 TRAJ50*01 CASSQLGEAKEGTEAFF TRBV11-1*01 TRBJ1-1*01 HLA-B*08:01 B2M MHCI RAKFKQLL BZLF1 EBV PMID:34811538 tetramer-sort yes amplicon-seq effector memory T cells T1D T1D_5 chip0423_602440 PBMC +5726 CAALFWtg??gcYHTLIF TRAV13-1*01 TRAJ4*01 CASSLSVSSYTDTQYF TRBV27*01 TRBJ2-3*01 HLA-A*02:01 B2M MHCI YVLDHLIVV BRLF1 EBV PMID:34811538 tetramer-sort yes amplicon-seq effector memory T cells T1D T1D_4 chip0423_45585 PBMC +5727 CASQLAGGTGELLF TRBV24-1*01 TRBJ2-2*01 HLA-B*08:01 B2M MHCI RAKFKQLL BZLF1 EBV PMID:34811538 tetramer-sort yes amplicon-seq effector memory T cells T1D T1D_5 chip0423_719212 PBMC +5728 CILPLAGGTRSGKLTF TRAV26-2*01 TRAJ52*01 CASSLGQAYEQYF TRBV7-8*01 TRBJ2-7*01 HLA-B*08:01 B2M MHCI FLRGRAYGL EBNA3A EBV PMID:34811538 tetramer-sort yes amplicon-seq effector memory T cells T1D T1D_6 chip0423_406152 PBMC +5729 CAATHTDKLIF TRAV27*01 TRAJ34*01 CASSSTGGGDQPQHF TRBV7-9*01 TRBJ1-5*01 HLA-B*08:01 B2M MHCI RAKFKQLL BZLF1 EBV PMID:34811538 tetramer-sort yes amplicon-seq effector memory T cells T1D T1D_4 chip0423_87184 PBMC +5730 CLVGEINNDMRF TRAV4*01 TRAJ43*01 CASRFLGGGGTDTQYF TRBV11-2*01 TRBJ2-3*01 HLA-B*08:01 B2M MHCI RAKFKQLL BZLF1 EBV PMID:34811538 tetramer-sort yes amplicon-seq effector memory T cells T1D T1D_4 chip0423_372703 PBMC +5731 CASGLGEGEGASEQFF TRBV7-6*01 TRBJ2-1*01 HLA-B*08:01 B2M MHCI FLRGRAYGL EBNA3A EBV PMID:34811538 tetramer-sort yes amplicon-seq effector memory T cells T1D T1D_4 chip0423_113168 PBMC +5732 CASNDIREGQGEAFF TRBV10-2*01 TRBJ1-1*01 HLA-B*08:01 B2M MHCI QAKWRLQTL EBNA3A EBV PMID:34811538 tetramer-sort yes amplicon-seq effector memory T cells T1D T1D_6 chip0423_34424 PBMC +5733 CILPLAGGTNYGKLTF TRAV26-2*01 TRAJ52*01 CASSSGQAYEQYF TRBV7-8*01 TRBJ2-7*01 HLA-B*08:01 B2M MHCI FLRGRAYGL EBNA3A EBV PMID:34811538 tetramer-sort yes amplicon-seq effector memory T cells healthy healthy_4 chip0423_727904 PBMC +5734 CAVSDGEGAQKLVF TRAV8-6*01 TRAJ54*01 CASSLTVLAGPNTEAFF TRBV7-3*01 TRBJ1-1*01 HLA-B*08:01 B2M MHCI RAKFKQLL BZLF1 EBV PMID:34811538 tetramer-sort yes amplicon-seq effector memory T cells T1D T1D_4 chip0423_482407 PBMC +5735 CAVRAGAGAPQLVF TRAV8-6*01 TRAJ54*01 CASSLTVLAGPNTEAFF TRBV7-3*01 TRBJ1-1*01 HLA-B*08:01 B2M MHCI RAKFKQLL BZLF1 EBV PMID:34811538 tetramer-sort yes amplicon-seq effector memory T cells T1D T1D_4 chip0423_592731 PBMC +5736 CILPLAGGTSYGKLTF TRAV26-2*01 TRAJ52*01 CASSLGQAYEQYF TRBV7-8*01 TRBJ2-7*01 HLA-B*08:01 B2M MHCI FLRGRAYGL EBNA3A EBV PMID:34811538 tetramer-sort yes amplicon-seq effector memory T cells T1D T1D_6 chip0423_267820 PBMC +5737 CIVREGGGADGLTF TRAV26-1*01 TRAJ45*01 CASSLAVGEGPQLF TRBV7-9*01 TRBJ1-5*01 HLA-B*08:01 B2M MHCI RAKFKQLL BZLF1 EBV PMID:34811538 tetramer-sort yes amplicon-seq effector T cells T1D T1D_4 chip0423_225089 PBMC +5738 CASSLAVGEGPQHF TRBV7-9*01 TRBJ1-5*01 HLA-B*08:01 B2M MHCI RAKFKQLL BZLF1 EBV PMID:34811538 tetramer-sort yes amplicon-seq effector memory T cells T1D T1D_4 chip0423_476510 PBMC +5739 CAVNSGNTPLVF TRAV1-2*01 TRAJ29*01 CASSQVNNPGDGYTF TRBV14*01 TRBJ1-2*01 HLA-B*08:01 B2M MHCI QAKWRLQTL EBNA3A EBV PMID:34811538 tetramer-sort yes amplicon-seq effector memory T cells T1D T1D_4 chip0423_765092 PBMC +5740 CILPLAGGTSYGKLTF TRAV26-2*01 TRAJ52*01 HLA-B*08:01 B2M MHCI FLRGRAYGL EBNA3A EBV PMID:34811538 tetramer-sort yes amplicon-seq effector memory T cells T1D T1D_6 chip0423_17744 PBMC +5741 CASGPDISYSYEQYF TRBV12-5*01 TRBJ2-7*01 HLA-B*08:01 B2M MHCI RAKFKQLL BZLF1 EBV PMID:34811538 tetramer-sort yes amplicon-seq effector memory T cells T1D T1D_5 chip0423_856882 PBMC +5742 CAGSRTAPLIF TRAV27*01 TRAJ34*01 CASSSTGGGDQPQHF TRBV7-9*01 TRBJ1-5*01 HLA-B*08:01 B2M MHCI RAKFKQLL BZLF1 EBV PMID:34811538 tetramer-sort yes amplicon-seq effector memory T cells T1D T1D_4 chip0423_184618 PBMC +5743 CAVGGYGQNFVF TRAV12-2*01 TRAJ26*01 CASSFTSGGLYEQYF TRBV28*01 TRBJ2-7*01 HLA-A*02:01 B2M MHCI LLAGIGTVPI PGT HomoSapiens PMID:34811538 tetramer-sort yes amplicon-seq Naive T cells T1D T1D_4 chip0423_861708 PBMC +5744 CGADATSGTYKYIF TRAV34*01 TRAJ40*01 CSVGSGEGYEQYF TRBV29-1*01 TRBJ2-7*01 HLA-B*08:01 B2M MHCI RAKFKQLL BZLF1 EBV PMID:34811538 tetramer-sort yes amplicon-seq effector memory T cells T1D T1D_4 chip0423_781215 PBMC +5745 CSAGRDGTNEKLFF TRBV29-1*01 TRBJ1-4*01 HLA-A*02:01 B2M MHCI GLCTLVAML BLMF1 EBV PMID:34811538 tetramer-sort yes amplicon-seq effector memory T cells T1D T1D_6 chip0423_526927 PBMC +5746 CILPLAGGTSFGVLPF TRAV26-2*01 TRAJ52*01 HLA-B*08:01 B2M MHCI FLRGRAYGL EBNA3A EBV PMID:34811538 tetramer-sort yes amplicon-seq effector memory T cells T1D T1D_4 chip0423_160337 PBMC +5747 CAGQTGNTGKLIF TRAV27*01 TRAJ37*01 HLA-A*02:01 B2M MHCI GILGFVFTL M1 InfluenzaA PMID:34811538 tetramer-sort yes amplicon-seq transitional T cells between effector and memory populations T1D T1D_6 chip0423_487461 PBMC +5748 CSAGRDGTNEKLFF TRBV29-1*01 TRBJ1-4*01 HLA-A*02:01 B2M MHCI GLCTLVAML BLMF1 EBV PMID:34811538 tetramer-sort yes amplicon-seq effector memory T cells T1D T1D_6 chip0423_675710 PBMC +5749 CIAVTStc??ccGNQFCF TRAV26-1*01 TRAJ49*01 CSAGRDGTNEKLFF TRBV29-1*01 TRBJ1-4*01 HLA-A*02:01 B2M MHCI GLCTLVAML BLMF1 EBV PMID:34811538 tetramer-sort yes amplicon-seq effector memory T cells T1D T1D_6 chip0423_512267 PBMC +5750 CAPSLNSGGYQKVTF TRAV13-1*01 TRAJ13*01 CASSVVGGDYGYTF TRBV2*01 TRBJ1-2*01 HLA-B*08:01 B2M MHCI FLRGRAYGL EBNA3A EBV PMID:34811538 tetramer-sort yes amplicon-seq effector memory T cells tet_neg chip0423_864389 PBMC +5751 CAAKETSYDKVIF TRAV13-1*01 TRAJ50*01 CASSLLGRSNTEAFF TRBV7-9*01 TRBJ1-1*01 HLA-B*08:01 B2M MHCI RAKFKQLL BZLF1 EBV PMID:34811538 tetramer-sort yes amplicon-seq effector T cells T1D T1D_5 chip0423_861052 PBMC +5752 CASQLAGGTGELFF TRBV24-1*01 TRBJ2-2*01 HLA-B*08:01 B2M MHCI RAKFKQLL BZLF1 EBV PMID:34811538 tetramer-sort yes amplicon-seq effector T cells T1D T1D_5 chip0423_170085 PBMC +5753 CAMSAEYKLSF TRAV12-3*01 TRAJ20*01 CASSMDPGTGEYQPQHF TRBV19*01 TRBJ1-5*01 HLA-A*02:01 B2M MHCI LLAGIGTVPI PGT HomoSapiens PMID:34811538 tetramer-sort yes amplicon-seq transitional T cells between effector and memory populations T1D T1D_6 chip0423_197232 PBMC +5754 CAVSDGEGAQKLVF TRAV8-6*01 TRAJ54*01 CASSLTVLAGPNTEAFF TRBV7-3*01 TRBJ1-1*01 HLA-B*08:01 B2M MHCI RAKFKQLL BZLF1 EBV PMID:34811538 tetramer-sort yes amplicon-seq effector memory T cells T1D T1D_4 chip0423_556119 PBMC +5755 CILPLAGGTSYGKLTF TRAV26-2*01 TRAJ52*01 CASSLGQAYEQYF TRBV7-8*01 TRBJ2-7*01 HLA-B*08:01 B2M MHCI FLRGRAYGL EBNA3A EBV PMID:34811538 tetramer-sort yes amplicon-seq effector memory T cells T1D T1D_6 chip0423_339619 PBMC +5756 CVVNSFRDQAGTALIF TRAV12-1*01 TRAJ15*01 CASLRLGASGDSDTQYF TRBV11-1*01 TRBJ2-3*01 HLA-B*08:01 B2M MHCI RAKFKQLL BZLF1 EBV PMID:34811538 tetramer-sort yes amplicon-seq central memory T cells T1D T1D_5 chip0423_211832 PBMC +5757 CASSLAVGEGPQHF TRBV7-9*01 TRBJ1-5*01 HLA-B*08:01 B2M MHCI RAKFKQLL BZLF1 EBV PMID:34811538 tetramer-sort yes amplicon-seq effector memory T cells T1D T1D_4 chip0423_331114 PBMC +5758 CAEMETSYDKVIF TRAV13-2*01 TRAJ50*01 CASTHPQDVNTGELFF TRBV7-9*01 TRBJ2-2*01 HLA-B*08:01 B2M MHCI RAKFKQLL BZLF1 EBV PMID:34811538 tetramer-sort yes amplicon-seq effector memory T cells T1D T1D_5 chip0423_593793 PBMC +5759 CASSLGQAYEQYS TRBV7-8*01 TRBJ2-7*01 HLA-B*08:01 B2M MHCI FLRGRAYGL EBNA3A EBV PMID:34811538 tetramer-sort yes amplicon-seq effector T cells T1D T1D_6 chip0423_216238 PBMC +5760 CAAQETSYDKVIF TRAV13-1*01 TRAJ50*01 HLA-B*08:01 B2M MHCI RAKFKQLL BZLF1 EBV PMID:34811538 tetramer-sort yes amplicon-seq effector T cells T1D T1D_5 chip0423_235240 PBMC +5761 CATPTVSTGANSKLTF TRAV17*01 TRAJ56*01 CASSMMGSGYNEQFF TRBV19*01 TRBJ2-1*01 HLA-A*02:01 B2M MHCI GILGFVFTL M1 InfluenzaA PMID:34811538 tetramer-sort yes amplicon-seq effector memory T cells healthy healthy_4 chip0423_116196 PBMC +5762 CASSLNPVLRLDTQYF TRBV28*01 TRBJ2-3*01 HLA-B*08:01 B2M MHCI QAKWRLQTL EBNA3A EBV PMID:34811538 tetramer-sort yes amplicon-seq central memory T cells T1D T1D_4 chip0423_617653 PBMC +5764 CAAGRPat?NTDNLIF TRAV20*01 TRAJ34*01 CASSPDGSTGELFF TRBV12-3*01,TRBV12-4*01 TRBJ2-2*01 HLA-B*08:01 B2M MHCI RAKFKQLL BZLF1 EBV PMID:34811538 tetramer-sort yes amplicon-seq effector memory T cells T1D T1D_5 chip0423_13242 PBMC +5765 CAAPDASYDKVIF TRAV13-1*01 TRAJ50*01 CASSPPGANVLTF TRBV12-3*01,TRBV12-4*01 TRBJ2-6*01 HLA-B*08:01 B2M MHCI RAKFKQLL BZLF1 EBV PMID:34811538 tetramer-sort yes amplicon-seq effector T cells T1D T1D_5 chip0423_248073 PBMC +5766 CILPLAGGPRYGTLTF TRAV26-2*01 TRAJ52*01 HLA-B*08:01 B2M MHCI FLRGRAYGL EBNA3A EBV PMID:34811538 tetramer-sort yes amplicon-seq effector memory T cells T1D T1D_6 chip0423_70820 PBMC +5767 CAAAETSYDKVIF TRAV13-1*01 TRAJ50*01 CASQLAGGTGELFF TRBV24-1*01 TRBJ2-2*01 HLA-B*08:01 B2M MHCI RAKFKQLL BZLF1 EBV PMID:34811538 tetramer-sort yes amplicon-seq effector T cells T1D T1D_5 chip0423_113861 PBMC +5768 CAVREYGNKLVF TRAV1-2*01 TRAJ47*01 CASSLAGREGTQYF TRBV11-3*01 TRBJ2-3*01 HLA-B*08:01 B2M MHCI ELRSRYWAI NP InfluenzaA PMID:34811538 tetramer-sort yes amplicon-seq transitional T cells between effector and memory populations T1D T1D_6 chip0423_209894 PBMC +5769 CILPLAGGTSYGKLTF TRAV26-2*01 TRAJ52*01 CASSLGQAYEQYF TRBV7-8*01 TRBJ2-7*01 HLA-B*08:01 B2M MHCI FLRGRAYGL EBNA3A EBV PMID:34811538 tetramer-sort yes amplicon-seq effector memory T cells T1D T1D_6 chip0423_112404 PBMC +5770 CILPLAGGTSYGKLTF TRAV26-2*01 TRAJ52*01 CASSLGQAYEQYF TRBV7-8*01 TRBJ2-7*01 HLA-B*08:01 B2M MHCI FLRGRAYGL EBNA3A EBV PMID:34811538 tetramer-sort yes amplicon-seq effector memory T cells T1D T1D_6 chip0423_467112 PBMC +5771 CAVSDREYGNKLVF TRAV8-6*01 TRAJ47*01 CASSLIVASGDNEQFF TRBV7-3*01 TRBJ2-1*01 HLA-B*08:01 B2M MHCI RAKFKQLL BZLF1 EBV PMID:34811538 tetramer-sort yes amplicon-seq effector memory T cells T1D T1D_6 chip0423_177948 PBMC +5772 CILPLAGGTSYGKLTF TRAV26-2*01 TRAJ52*01 CASSLGQAYEQYF TRBV7-8*01 TRBJ2-7*01 HLA-B*08:01 B2M MHCI FLRGRAYGL EBNA3A EBV PMID:34811538 tetramer-sort yes amplicon-seq effector memory T cells T1D T1D_6 chip0423_677950 PBMC +5773 CALSEAIGSGTYKYIF TRAV19*01 TRAJ40*01 CASSLGQGGNEKLFF TRBV4-1*01 TRBJ1-4*01 HLA-A*01:01 B2M MHCI HSNLNDATY NP InfluenzaA PMID:34811538 tetramer-sort yes amplicon-seq transitional T cells between effector and memory populations T1D T1D_6 chip0423_81864 PBMC +5774 CAVNSGNTPLVF TRAV1-2*01 TRAJ29*01 CASSQVNNPGDGYTF TRBV14*01 TRBJ1-2*01 HLA-B*08:01 B2M MHCI QAKWRLQTL EBNA3A EBV PMID:34811538 tetramer-sort yes amplicon-seq effector memory T cells T1D T1D_4 chip0423_65983 PBMC +5775 CAENTRNFGNEKLTF TRAV13-2*01 TRAJ48*01 CASSQVRGGYEQYF TRBV3-1*01 TRBJ2-7*01 HLA-B*08:01 B2M MHCI RAKFKQLL BZLF1 EBV PMID:34811538 tetramer-sort yes amplicon-seq effector memory T cells T1D T1D_6 chip0423_329784 PBMC +5776 CAARETSYDKVIF TRAV13-1*01 TRAJ50*01 CASSVSGAPYEQYF TRBV9*01 TRBJ2-7*01 HLA-B*08:01 B2M MHCI FLRGRAYGL EBNA3A EBV PMID:34811538 tetramer-sort yes amplicon-seq effector T cells T1D T1D_6 chip0423_775601 PBMC +5777 CASSSLGTGDTEAFF TRBV7-9*01 TRBJ1-1*01 HLA-B*08:01 B2M MHCI RAKFKQLL BZLF1 EBV PMID:34811538 tetramer-sort yes amplicon-seq effector T cells T1D T1D_5 chip0423_647087 PBMC +5778 CASSIRSAYEQYF TRBV19*01 TRBJ2-7*01 HLA-A*02:01 B2M MHCI GILGFVFTL M1 InfluenzaA PMID:34811538 tetramer-sort yes amplicon-seq transitional T cells between effector and memory populations T1D T1D_6 chip0423_110887 PBMC +5779 CILPLAGGTSYGKLTF TRAV26-2*01 TRAJ52*01 CASSLGQAYEQYF TRBV7-8*01 TRBJ2-7*01 HLA-B*08:01 B2M MHCI FLRGRAYGL EBNA3A EBV PMID:34811538 tetramer-sort yes amplicon-seq effector memory T cells T1D T1D_4 chip0423_188309 PBMC +5780 CAVNRFLADRGSTLGRLYF TRAV12-2*01 TRAJ18*01 CASSQEVTDTQYF TRBV4-3*01 TRBJ2-3*01 HLA-A*02:01 B2M MHCI YLLEMLWRL LMP1 EBV PMID:34811538 tetramer-sort yes amplicon-seq central memory T cells T1D T1D_4 chip0423_38476 PBMC +5781 CIVRVVCac?GTASKLTF TRAV26-1*01 TRAJ44*01 CASSLAVGEGPQHF TRBV7-9*01 TRBJ1-5*01 HLA-B*08:01 B2M MHCI RAKFKQLL BZLF1 EBV PMID:34811538 tetramer-sort yes amplicon-seq effector memory T cells T1D T1D_4 chip0423_61002 PBMC +5782 CILPLAGGTSYGKLTF TRAV26-2*01 TRAJ52*01 CASSLGQAYEQYF TRBV7-8*01 TRBJ2-7*01 HLA-B*08:01 B2M MHCI FLRGRAYGL EBNA3A EBV PMID:34811538 tetramer-sort yes amplicon-seq effector memory T cells T1D T1D_4 chip0423_835619 PBMC +5783 CAETDQ*RAQKLVF TRAV8-6*01 TRAJ54*01 HLA-B*08:01 B2M MHCI RAKFKQLL BZLF1 EBV PMID:34811538 tetramer-sort yes amplicon-seq effector memory T cells T1D T1D_4 chip0423_527753 PBMC +5784 CAVTSWTDKLIF TRAV12-2*01 TRAJ34*01 CASSVGGNTEAFF TRBV9*01 TRBJ1-1*01 HLA-A*02:01 B2M MHCI ALGIGILTV MART1 HomoSapiens PMID:34811538 tetramer-sort yes amplicon-seq Naive T cells T1D T1D_6 chip0423_110843 PBMC +5785 CIVREGGGADGLTF TRAV26-1*01 TRAJ45*01 CASSLAVGEGPQHF TRBV7-9*01 TRBJ1-5*01 HLA-B*08:01 B2M MHCI RAKFKQLL BZLF1 EBV PMID:34811538 tetramer-sort yes amplicon-seq effector T cells T1D T1D_4 chip0423_189609 PBMC +5786 CASQGGSQGNLIF TRAV20*01 TRAJ42*01 CASSLGGQTETQYF TRBV13*01 TRBJ2-5*01 HLA-A*02:01 B2M MHCI TLLANVTAV VP6 RotavirusA PMID:34811538 tetramer-sort yes amplicon-seq transitional T cells between effector and memory populations T1D T1D_6 chip0423_44666 PBMC +5787 CIVREGGGADGLTF TRAV26-1*01 TRAJ45*01 CASSLAVGEGPQHF TRBV7-9*01 TRBJ1-5*01 HLA-B*08:01 B2M MHCI RAKFKQLL BZLF1 EBV PMID:34811538 tetramer-sort yes amplicon-seq effector memory T cells T1D T1D_4 chip0423_41041 PBMC +5788 CLLPLAGGTCYGKLTF TRAV26-2*01 TRAJ52*01 CASSLGQAYEQYF TRBV7-8*01 TRBJ2-7*01 HLA-B*08:01 B2M MHCI FLRGRAYGL EBNA3A EBV PMID:34811538 tetramer-sort yes amplicon-seq effector T cells T1D T1D_6 chip0423_95311 PBMC +5789 CAASETSYDKVIF TRAV13-1*01 TRAJ50*01 CASSWLGDRYNSPLHF TRBV7-9*01 TRBJ1-6*01 HLA-B*08:01 B2M MHCI RAKFKQLL BZLF1 EBV PMID:34811538 tetramer-sort yes amplicon-seq effector memory T cells T1D T1D_5 chip0423_680174 PBMC +5790 CIVRVVCac?GTASKLTF TRAV26-1*01 TRAJ44*01 CASSLAVGEGPQHF TRBV7-9*01 TRBJ1-5*01 HLA-B*08:01 B2M MHCI RAKFKQLL BZLF1 EBV PMID:34811538 tetramer-sort yes amplicon-seq effector T cells T1D T1D_4 chip0423_220239 PBMC +5791 CILPLAGGTSYGKLTF TRAV26-2*01 TRAJ52*01 CASSLGQAYEQYF TRBV7-8*01 TRBJ2-7*01 HLA-B*08:01 B2M MHCI FLRGRAYGL EBNA3A EBV PMID:34811538 tetramer-sort yes amplicon-seq effector memory T cells T1D T1D_6 chip0423_611581 PBMC +5792 CAASETSYDKVIF TRAV13-1*01 TRAJ50*01 CASSPLGDRENSPLHF TRBV7-9*01 TRBJ1-6*01 HLA-B*08:01 B2M MHCI RAKFKQLL BZLF1 EBV PMID:34811538 tetramer-sort yes amplicon-seq effector memory T cells T1D T1D_5 chip0423_374781 PBMC +5793 CASQLAGGTGELFF TRBV24-1*01 TRBJ2-2*01 HLA-B*08:01 B2M MHCI RAKFKQLL BZLF1 EBV PMID:34811538 tetramer-sort yes amplicon-seq effector memory T cells T1D T1D_5 chip0423_84270 PBMC +5794 CVVSEAYNTDKLIF TRAV10*01 TRAJ34*01 CASSQLRESYNEQFF TRBV3-1*01 TRBJ2-1*01 HLA-A*02:01 B2M MHCI ILMHCQTTL GAD65 HomoSapiens PMID:34811538 tetramer-sort yes amplicon-seq Naive T cells T1D T1D_6 chip0423_644189 PBMC +5795 CIVREGGGADGLTF TRAV26-1*01 TRAJ45*01 CASSLAVGEGPQHF TRBV7-9*01 TRBJ1-5*01 HLA-B*08:01 B2M MHCI RAKFKQLL BZLF1 EBV PMID:34811538 tetramer-sort yes amplicon-seq effector memory T cells T1D T1D_4 chip0423_218462 PBMC +5796 CAGQETSYDKVIF TRAV20*01 TRAJ50*01 CASSQVPPGHYGYTF TRBV4-2*01 TRBJ1-2*01 HLA-B*08:01 B2M MHCI RAKFKQLL BZLF1 EBV PMID:34811538 tetramer-sort yes amplicon-seq effector memory T cells T1D T1D_4 chip0423_409863 PBMC +5797 CASSSLGDRDQTAFF TRBV7-9*01 TRBJ1-1*01 HLA-A*02:01 B2M MHCI VMNILLQYV GAD65 HomoSapiens PMID:34811538 tetramer-sort yes amplicon-seq effector memory T cells healthy healthy_3 chip0423_727584 PBMC +5798 CILPLAGCTSYGKLTF TRAV26-2*01 TRAJ52*01 CASSQGQAYEQYF TRBV7-8*01 TRBJ2-7*01 HLA-B*08:01 B2M MHCI FLRGRAYGL EBNA3A EBV PMID:34811538 tetramer-sort yes amplicon-seq effector T cells T1D T1D_4 chip0423_659022 PBMC +5799 CILPLAGGTSYGKLTF TRAV26-2*01 TRAJ52*01 HLA-B*08:01 B2M MHCI FLRGRAYGL EBNA3A EBV PMID:34811538 tetramer-sort yes amplicon-seq effector memory T cells T1D T1D_6 chip0423_178050 PBMC +5800 CIVREGGGADGLTF TRAV26-1*01 TRAJ45*01 CASSLAVGEGPQHF TRBV7-9*01 TRBJ1-5*01 HLA-B*08:01 B2M MHCI RAKFKQLL BZLF1 EBV PMID:34811538 tetramer-sort yes amplicon-seq effector T cells T1D T1D_4 chip0423_644555 PBMC +5801 CASSQDYGRGGYTF TRBV4-1*01 TRBJ1-2*01 HLA-B*08:01 B2M MHCI CPLSKILL LMP2A EBV PMID:34811538 tetramer-sort yes amplicon-seq effector memory T cells T1D T1D_6 chip0423_89647 PBMC +5802 CASSLAVGEGPQHF TRBV7-9*01 TRBJ1-5*01 HLA-B*08:01 B2M MHCI RAKFKQLL BZLF1 EBV PMID:34811538 tetramer-sort yes amplicon-seq effector memory T cells T1D T1D_4 chip0423_671921 PBMC +5803 CAVRDTTWDDKIIF TRAV3*01 TRAJ30*01 CASSLGGGEGASEQFF TRBV7-6*01 TRBJ2-1*01 HLA-B*08:01 B2M MHCI FLRGRAYGL EBNA3A EBV PMID:34811538 tetramer-sort yes amplicon-seq effector T cells T1D T1D_4 chip0423_251766 PBMC +5804 CAV*LVRg?tSNYKLTF TRAV8-6*01 TRAJ53*01 CASRRTGANSPLHF TRBV12-3*01,TRBV12-4*01 TRBJ1-6*01 HLA-B*08:01 B2M MHCI RAKFKQLL BZLF1 EBV PMID:34811538 tetramer-sort yes amplicon-seq effector memory T cells T1D T1D_4 chip0423_877780 PBMC +5805 SLIPLAGGTSYANLTF TRAV26-2*01 TRAJ52*01 CASSLGQAYEQYF TRBV7-8*01 TRBJ2-7*01 HLA-B*08:01 B2M MHCI FLRGRAYGL EBNA3A EBV PMID:34811538 tetramer-sort yes amplicon-seq effector memory T cells T1D T1D_4 chip0423_852266 PBMC +5806 CILPLAGGTSYGKLTF TRAV26-2*01 TRAJ52*01 CASSLGQAYEQYF TRBV7-8*01 TRBJ2-7*01 HLA-B*08:01 B2M MHCI FLRGRAYGL EBNA3A EBV PMID:34811538 tetramer-sort yes amplicon-seq effector memory T cells T1D T1D_4 chip0423_354455 PBMC +5807 CILPLADGTSYGKLTF TRAV26-2*01 TRAJ52*01 CASSLGQAYEQYF TRBV7-8*01 TRBJ2-7*01 HLA-B*08:01 B2M MHCI FLRGRAYGL EBNA3A EBV PMID:34811538 tetramer-sort yes amplicon-seq central memory T cells T1D T1D_4 chip0423_714374 PBMC +5808 CASQGGSQGNLIF TRAV20*01 TRAJ42*01 CASSLGGQTETQYF TRBV13*01 TRBJ2-5*01 HLA-A*02:01 B2M MHCI TLLANVTAV VP6 RotavirusA PMID:34811538 tetramer-sort yes amplicon-seq transitional T cells between effector and memory populations T1D T1D_6 chip0423_623593 PBMC +5809 CAVNSGNTPLVF TRAV1-2*01 TRAJ29*01 CASSQVNNPGDGYTF TRBV14*01 TRBJ1-2*01 HLA-B*08:01 B2M MHCI QAKWRLQTL EBNA3A EBV PMID:34811538 tetramer-sort yes amplicon-seq effector memory T cells T1D T1D_4 chip0423_108731 PBMC +5810 CASSFTSSGGVEQFF TRBV7-9*01 TRBJ2-1*01 HLA-B*08:01 B2M MHCI RAKFKQLL BZLF1 EBV PMID:34811538 tetramer-sort yes amplicon-seq effector T cells T1D T1D_5 chip0423_412539 PBMC +5811 CIVREGGGADGLTF TRAV26-1*01 TRAJ45*01 CASSLAVGEGPQHF TRBV7-9*01 TRBJ1-5*01 HLA-B*08:01 B2M MHCI RAKFKQLL BZLF1 EBV PMID:34811538 tetramer-sort yes amplicon-seq effector memory T cells T1D T1D_4 chip0423_600082 PBMC +5812 CAVRDTTWAAKIIF TRAV3*01 TRAJ30*01 CASSLGGGEGASEQFF TRBV7-6*01 TRBJ2-1*01 HLA-B*08:01 B2M MHCI FLRGRAYGL EBNA3A EBV PMID:34811538 tetramer-sort yes amplicon-seq effector memory T cells T1D T1D_4 chip0423_80821 PBMC +5813 CAAAETSYDKVIF TRAV13-1*01 TRAJ50*01 CASQLAGGTGELFF TRBV24-1*01 TRBJ2-2*01 HLA-B*08:01 B2M MHCI RAKFKQLL BZLF1 EBV PMID:34811538 tetramer-sort yes amplicon-seq effector memory T cells T1D T1D_5 chip0423_359224 PBMC +5814 CASSQVNNPGDGYTF TRBV14*01 TRBJ1-2*01 HLA-B*08:01 B2M MHCI QAKWRLQTL EBNA3A EBV PMID:34811538 tetramer-sort yes amplicon-seq effector memory T cells T1D T1D_4 chip0423_729346 PBMC +5815 CASSLGQAYEQYF TRBV7-8*01 TRBJ2-7*01 HLA-B*08:01 B2M MHCI FLRGRAYGL EBNA3A EBV PMID:34811538 tetramer-sort yes amplicon-seq effector memory T cells T1D T1D_6 chip0423_215908 PBMC +5816 CASSQDGTGINTEAFF TRBV4-1*01 TRBJ1-1*01 HLA-A*01:01 B2M MHCI CTELKLSDY NP InfluenzaA PMID:34811538 tetramer-sort yes amplicon-seq transitional T cells between effector and memory populations T1D T1D_5 chip0423_582753 PBMC +5817 CAVPDYKLSF TRAV12-2*01 TRAJ20*01 CSVDPLAGEVQNTQYF TRBV29-1*01 TRBJ2-3*01 HLA-A*02:01 B2M MHCI LLAGIGTVPI PGT HomoSapiens PMID:34811538 tetramer-sort yes amplicon-seq Naive T cells healthy healthy_3 chip0423_572777 PBMC +5818 CASSQTNQPQHF TRBV7-9*01 TRBJ1-5*01 HLA-B*08:01 B2M MHCI RAKFKQLL BZLF1 EBV PMID:34811538 tetramer-sort yes amplicon-seq Naive T cells T1D T1D_5 chip0423_561698 PBMC +5819 CAVSDGEGAQKLVF TRAV8-6*01 TRAJ54*01 CASSLTALAGPNTEAFF TRBV7-3*01 TRBJ1-1*01 HLA-B*08:01 B2M MHCI RAKFKQLL BZLF1 EBV PMID:34811538 tetramer-sort yes amplicon-seq effector memory T cells T1D T1D_4 chip0423_845725 PBMC +5820 CASSIRSSYEQYF TRBV19*01 TRBJ2-7*01 HLA-A*02:01 B2M MHCI GILGFVFTL M1 InfluenzaA PMID:34811538 tetramer-sort yes amplicon-seq transitional T cells between effector and memory populations T1D T1D_6 chip0423_246064 PBMC +5821 CASSQVNNPGDGYTF TRBV14*01 TRBJ1-2*01 HLA-B*08:01 B2M MHCI QAKWRLQTL EBNA3A EBV PMID:34811538 tetramer-sort yes amplicon-seq effector memory T cells T1D T1D_4 chip0423_868978 PBMC +5822 CAVSDGEGAQKLVF TRAV8-6*01 TRAJ54*01 CASSLTVLAGPNTEAFF TRBV7-3*01 TRBJ1-1*01 HLA-B*08:01 B2M MHCI RAKFKQLL BZLF1 EBV PMID:34811538 tetramer-sort yes amplicon-seq effector T cells T1D T1D_4 chip0423_390826 PBMC +5823 CALGRSNFGNEKLTF TRAV12-3*01 TRAJ48*01 CSSSGGPYTDTQYF TRBV20-1*01 TRBJ2-3*01 HLA-A*02:01 B2M MHCI LLAGIGTVPI PGT HomoSapiens PMID:34811538 tetramer-sort yes amplicon-seq Naive T cells T1D T1D_6 chip0423_383419 PBMC +5824 CAESETGANNLFF TRAV5*01 TRAJ36*01 CASSTPGYTYEQYF TRBV11-3*01 TRBJ2-7*01 HLA-B*08:01 B2M MHCI RAKFKQLL BZLF1 EBV PMID:34811538 tetramer-sort yes amplicon-seq effector memory T cells T1D T1D_4 chip0423_579559 PBMC +5825 CIVREGGGADGLTF TRAV26-1*01 TRAJ45*01 CASSLAVGEGPQHF TRBV7-9*01 TRBJ1-5*01 HLA-B*08:01 B2M MHCI RAKFKQLL BZLF1 EBV PMID:34811538 tetramer-sort yes amplicon-seq effector T cells T1D T1D_4 chip0423_47831 PBMC +5826 CIVREGGGADGLPF TRAV26-1*01 TRAJ45*01 CASSLAVGEGPQHF TRBV7-9*01 TRBJ1-5*01 HLA-B*08:01 B2M MHCI RAKFKQLL BZLF1 EBV PMID:34811538 tetramer-sort yes amplicon-seq effector T cells T1D T1D_4 chip0423_557588 PBMC +5827 CAVPLKTSYDQVLF TRAV8-3*01 TRAJ50*01 CASSRQGGHYGYTF TRBV6-1*01 TRBJ1-2*01 HLA-A*02:01 B2M MHCI FLYALALLL LMP2 EBV PMID:34811538 tetramer-sort yes amplicon-seq central memory T cells T1D T1D_6 chip0423_232977 PBMC +5828 CAMREGEGGGFKTIF TRAV14/DV4*01 TRAJ9*01 CASSPPGRNEKLFF TRBV12-3*01,TRBV12-4*01 TRBJ1-4*01 HLA-B*08:01 B2M MHCI RAKFKQLL BZLF1 EBV PMID:34811538 tetramer-sort yes amplicon-seq effector T cells T1D T1D_5 chip0423_182844 PBMC +5829 CASSLAVGEGPQHF TRBV7-9*01 TRBJ1-5*01 HLA-B*08:01 B2M MHCI RAKFKQLL BZLF1 EBV PMID:34811538 tetramer-sort yes amplicon-seq effector memory T cells T1D T1D_4 chip0423_129814 PBMC +5831 CATSISNFGNEKLTF TRAV12-3*01 TRAJ48*01 CASRGGSPNQPQHF TRBV27*01 TRBJ1-5*01 HLA-A*02:01 B2M MHCI LLAGIGTVPI PGT HomoSapiens PMID:34811538 tetramer-sort yes amplicon-seq Naive T cells T1D T1D_6 chip0423_818451 PBMC +5832 CAMREDTGRRALTF TRAV14/DV4*01 TRAJ5*01 CASSFNSLQEIAYEQYF TRBV11-2*01 TRBJ2-7*01 HLA-B*08:01 B2M MHCI RAKFKQLL BZLF1 EBV PMID:34811538 tetramer-sort yes amplicon-seq effector T cells T1D T1D_5 chip0423_493342 PBMC +5833 CAAAETSYNKVIF TRAV13-1*01 TRAJ50*01 HLA-B*08:01 B2M MHCI RAKFKQLL BZLF1 EBV PMID:34811538 tetramer-sort yes amplicon-seq effector T cells T1D T1D_5 chip0423_185606 PBMC +5834 CAAAETSYDKVIF TRAV13-1*01 TRAJ50*01 CASQLAGGTGELFF TRBV24-1*01 TRBJ2-2*01 HLA-B*08:01 B2M MHCI RAKFKQLL BZLF1 EBV PMID:34811538 tetramer-sort yes amplicon-seq effector memory T cells T1D T1D_5 chip0423_156089 PBMC +5835 CASSLGQAYEQYF TRBV7-8*01 TRBJ2-7*01 HLA-B*08:01 B2M MHCI FLRGRAYGL EBNA3A EBV PMID:34811538 tetramer-sort yes amplicon-seq effector memory T cells T1D T1D_4 chip0423_122724 PBMC +5836 CAVNSGNTPLVF TRAV1-2*01 TRAJ29*01 CASSQVNNPGDGYTF TRBV14*01 TRBJ1-2*01 HLA-B*08:01 B2M MHCI QAKWRLQTL EBNA3A EBV PMID:34811538 tetramer-sort yes amplicon-seq effector memory T cells T1D T1D_4 chip0423_601603 PBMC +5838 CAAAETSHDKVIF TRAV13-1*01 TRAJ50*01 CASQLAGGTGELFF TRBV24-1*01 TRBJ2-2*01 HLA-B*08:01 B2M MHCI RAKFKQLL BZLF1 EBV PMID:34811538 tetramer-sort yes amplicon-seq effector memory T cells T1D T1D_5 chip0423_425879 PBMC +5839 CILPLAGGTSYGKLTF TRAV26-2*01 TRAJ52*01 CASSLGQAYEQYF TRBV7-8*01 TRBJ2-7*01 HLA-B*08:01 B2M MHCI FLRGRAYGL EBNA3A EBV PMID:34811538 tetramer-sort yes amplicon-seq effector memory T cells T1D T1D_6 chip0423_513067 PBMC +5840 CAEAGTALIF TRAV13-2*01 TRAJ15*01 CASSQDGTGINTEAFF TRBV4-1*01 TRBJ1-1*01 HLA-A*01:01 B2M MHCI CTELKLSDY NP InfluenzaA PMID:34811538 tetramer-sort yes amplicon-seq transitional T cells between effector and memory populations T1D T1D_5 chip0423_81096 PBMC +5841 CILPLAGGTSYGKLTF TRAV26-2*01 TRAJ52*01 CASSLGQAYEQYF TRBV7-8*01 TRBJ2-7*01 HLA-B*08:01 B2M MHCI FLRGRAYGL EBNA3A EBV PMID:34811538 tetramer-sort yes amplicon-seq effector memory T cells T1D T1D_6 chip0423_873129 PBMC +5842 CILPLAGGTSYGKLTF TRAV26-2*01 TRAJ52*01 CASSLGQAYEQYF TRBV7-8*01 TRBJ2-7*01 HLA-B*08:01 B2M MHCI FLRGRAYGL EBNA3A EBV PMID:34811538 tetramer-sort yes amplicon-seq effector memory T cells T1D T1D_4 chip0423_19966 PBMC +5843 CAVNPGGKLIF TRAV12-2*01 TRAJ23*01 CSAGRDGTNEKLFF TRBV29-1*01 TRBJ1-4*01 HLA-A*02:01 B2M MHCI GLCTLVAML BLMF1 EBV PMID:34811538 tetramer-sort yes amplicon-seq effector memory T cells T1D T1D_6 chip0423_114424 PBMC +5844 CASSLLGEQNSPLHF TRBV7-9*01 TRBJ1-6*01 HLA-B*08:01 B2M MHCI RAKFKQLL BZLF1 EBV PMID:34811538 tetramer-sort yes amplicon-seq effector memory T cells T1D T1D_5 chip0423_423391 PBMC +5845 CAVRDTTWAAKIIF TRAV3*01 TRAJ30*01 CASSLGGGEGASEQFF TRBV7-6*01 TRBJ2-1*01 HLA-B*08:01 B2M MHCI FLRGRAYGL EBNA3A EBV PMID:34811538 tetramer-sort yes amplicon-seq effector memory T cells T1D T1D_4 chip0423_433571 PBMC +5846 CAATETSYDKVIF TRAV13-1*01 TRAJ50*01 CASSLLGVRDRENEQYF TRBV11-1*01 TRBJ2-7*01 HLA-B*08:01 B2M MHCI RAKFKQLL BZLF1 EBV PMID:34811538 tetramer-sort yes amplicon-seq effector memory T cells T1D T1D_5 chip0423_84218 PBMC +5847 CILPLAGGTSYGKLTF TRAV26-2*01 TRAJ52*01 CASSLGQAYEQYF TRBV7-8*01 TRBJ2-7*01 HLA-B*08:01 B2M MHCI FLRGRAYGL EBNA3A EBV PMID:34811538 tetramer-sort yes amplicon-seq effector memory T cells T1D T1D_4 chip0423_306830 PBMC +5848 CAAPETSYDKVIF TRAV13-1*01 TRAJ50*01 CASSLLGEQNSPLHF TRBV7-9*01 TRBJ1-6*01 HLA-B*08:01 B2M MHCI RAKFKQLL BZLF1 EBV PMID:34811538 tetramer-sort yes amplicon-seq effector T cells T1D T1D_5 chip0423_34201 PBMC +5849 CAVVTGGGRNLPF TRAV5*01 TRAJ10*01 HLA-B*08:01 B2M MHCI CPLSKILL LMP2A EBV PMID:34811538 tetramer-sort yes amplicon-seq effector memory T cells T1D T1D_6 chip0423_593250 PBMC +5850 CASSQVNNPGDGYTF TRBV14*01 TRBJ1-2*01 HLA-B*08:01 B2M MHCI QAKWRLQTL EBNA3A EBV PMID:34811538 tetramer-sort yes amplicon-seq effector memory T cells T1D T1D_4 chip0423_537 PBMC +5851 CILPLAGGTSYGKLTF TRAV26-2*01 TRAJ52*01 CASSLGQAYEQYF TRBV7-8*01 TRBJ2-7*01 HLA-B*08:01 B2M MHCI FLRGRAYGL EBNA3A EBV PMID:34811538 tetramer-sort yes amplicon-seq effector T cells T1D T1D_6 chip0423_598436 PBMC +5852 CAALETSYDKVIF TRAV13-1*01 TRAJ50*01 CASSPDGSTGELFF TRBV12-3*01,TRBV12-4*01 TRBJ2-2*01 HLA-B*08:01 B2M MHCI RAKFKQLL BZLF1 EBV PMID:34811538 tetramer-sort yes amplicon-seq effector T cells T1D T1D_5 chip0423_107835 PBMC +5853 CAAMETSYDKVIF TRAV13-1*01 TRAJ50*01 CASSSTGAGNQPQHF TRBV7-9*01 TRBJ1-5*01 HLA-B*08:01 B2M MHCI RAKFKQLL BZLF1 EBV PMID:34811538 tetramer-sort yes amplicon-seq effector memory T cells T1D T1D_4 chip0423_358474 PBMC +5854 CAVITFRSNDYKLRF TRAV12-2*01 TRAJ20*01 CASSHGQGENTEAFF TRBV4-1*01 TRBJ1-1*01 HLA-B*08:01 B2M MHCI RAKFKQLL BZLF1 EBV PMID:34811538 tetramer-sort yes amplicon-seq effector T cells T1D T1D_4 chip0423_607333 PBMC +5855 CIIRAAGGALRLTF TRAV26-1*01 TRAJ45*01 CASSLAVGEGPQHF TRBV7-9*01 TRBJ1-5*01 HLA-B*08:01 B2M MHCI RAKFKQLL BZLF1 EBV PMID:34811538 tetramer-sort yes amplicon-seq effector T cells T1D T1D_4 chip0423_598776 PBMC +5856 CAVWDATCDAGVIF TRAV3*01 TRAJ30*01 CASSLGGGEGASEQFF TRBV7-6*01 TRBJ2-1*01 HLA-B*08:01 B2M MHCI FLRGRAYGL EBNA3A EBV PMID:34811538 tetramer-sort yes amplicon-seq effector memory T cells T1D T1D_4 chip0423_393575 PBMC +5857 CAASAFGGTSYGTLTF TRAV29/DV5*01 TRAJ52*01 CASSLRHLSNQPQHF TRBV13*01 TRBJ1-5*01 HLA-B*08:01 B2M MHCI RAKFKQLL BZLF1 EBV PMID:34811538 tetramer-sort yes amplicon-seq effector memory T cells T1D T1D_4 chip0423_799258 PBMC +5858 CAMRETYKLSF TRAV14/DV4*01 TRAJ20*01 CASSAGGSEGRTEAFV TRBV19*01 TRBJ1-1*01 HLA-B*08:01 B2M MHCI SRKHKWKL GAD2 HomoSapiens PMID:34811538 tetramer-sort yes amplicon-seq Naive T cells T1D T1D_5 chip0423_500503 PBMC +5859 CAMREEGHKLIF TRAV14/DV4*01 TRAJ32*01 CASSLLGGGYSYEQYF TRBV27*01 TRBJ2-7*01 HLA-B*08:01 B2M MHCI RAKFKQLL BZLF1 EBV PMID:34811538 tetramer-sort yes amplicon-seq effector memory T cells T1D T1D_6 chip0423_112234 PBMC +5860 CIVREGGGADGLPF TRAV26-1*01 TRAJ45*01 CASSLAVGEGPQHF TRBV7-9*01 TRBJ1-5*01 HLA-B*08:01 B2M MHCI RAKFKQLL BZLF1 EBV PMID:34811538 tetramer-sort yes amplicon-seq effector memory T cells T1D T1D_4 chip0423_572754 PBMC +5862 CASSHVNNPGDGYTF TRBV14*01 TRBJ1-2*01 HLA-B*08:01 B2M MHCI QAKWRLQTL EBNA3A EBV PMID:34811538 tetramer-sort yes amplicon-seq effector memory T cells T1D T1D_4 chip0423_694495 PBMC +5863 CLVGDGAGGGAVGLTF TRAV4*01 TRAJ45*01 CASSPILEGPDTQYF TRBV7-9*01 TRBJ2-3*01 HLA-B*08:01 B2M MHCI RAKFKQLL BZLF1 EBV PMID:34811538 tetramer-sort yes amplicon-seq effector memory T cells T1D T1D_5 chip0423_387575 PBMC +5864 CILPLAGGTSYGKLTF TRAV26-2*01 TRAJ52*01 CASSLGQAYEQYF TRBV7-8*01 TRBJ2-7*01 HLA-B*08:01 B2M MHCI FLRGRAYGL EBNA3A EBV PMID:34811538 tetramer-sort yes amplicon-seq effector memory T cells T1D T1D_6 chip0423_860685 PBMC +5865 CAATLYDKIIF TRAV29/DV5*01 TRAJ30*01 HLA-B*08:01 B2M MHCI RAKFKQLL BZLF1 EBV PMID:34811538 tetramer-sort yes amplicon-seq effector memory T cells healthy healthy_4 chip0423_773556 PBMC +5866 CILPLAGGTSYGKLTF TRAV26-2*01 TRAJ52*01 CASSLGQAYEQYF TRBV7-8*01 TRBJ2-7*01 HLA-B*08:01 B2M MHCI FLRGRAYGL EBNA3A EBV PMID:34811538 tetramer-sort yes amplicon-seq effector memory T cells T1D T1D_6 chip0423_586695 PBMC +5867 CAASKIEga?GGADGLTF TRAV23/DV6*01 TRAJ45*01 CASSLGQAYEQYF TRBV7-8*01 TRBJ2-7*01 HLA-B*08:01 B2M MHCI FLRGRAYGL EBNA3A EBV PMID:34811538 tetramer-sort yes amplicon-seq effector memory T cells T1D T1D_6 chip0423_811682 PBMC +5868 CAVNSGNTPLVF TRAV1-2*01 TRAJ29*01 CASSPVSSPGGGYTF TRBV14*01 TRBJ1-2*01 HLA-B*08:01 B2M MHCI QAKWRLQTL EBNA3A EBV PMID:34811538 tetramer-sort yes amplicon-seq effector T cells T1D T1D_4 chip0423_712240 PBMC +5869 CAMRTIEGANNLFF TRAV14/DV4*01 TRAJ36*01 HLA-B*08:01 B2M MHCI RAKFKQLL BZLF1 EBV PMID:34811538 tetramer-sort yes amplicon-seq effector T cells T1D T1D_5 chip0423_75445 PBMC +5870 CASSLPPW??gAAYNEQFF TRBV4-3*01 TRBJ2-1*01 HLA-B*08:01 B2M MHCI FLRGRAYGL EBNA3A EBV PMID:34811538 tetramer-sort yes amplicon-seq effector T cells T1D T1D_6 chip0423_453402 PBMC +5871 CAGATGNTGKLIF TRAV27*01 TRAJ37*01 HLA-A*02:01 B2M MHCI GILGFVFTL M1 InfluenzaA PMID:34811538 tetramer-sort yes amplicon-seq transitional T cells between effector and memory populations T1D T1D_6 chip0423_279363 PBMC +5872 CASNLATEAFF TRBV7-9*01 TRBJ1-1*01 HLA-A*01:01 B2M MHCI HSNLNDATY NP InfluenzaA PMID:34811538 tetramer-sort yes amplicon-seq Naive T cells T1D T1D_5 chip0423_6128 PBMC +5873 CAVLQDSNYQLIW TRAV21*01 TRAJ33*01 CASSDDGMNTEAFF TRBV10-2*01 TRBJ1-1*01 HLA-A*02:01 B2M MHCI CLGGLLTMV LMP2A EBV PMID:34811538 tetramer-sort yes amplicon-seq central memory T cells T1D T1D_4 chip0423_237707 PBMC +5874 CASSLAVGEGPQHF TRBV7-9*01 TRBJ1-5*01 HLA-B*08:01 B2M MHCI RAKFKQLL BZLF1 EBV PMID:34811538 tetramer-sort yes amplicon-seq effector memory T cells T1D T1D_4 chip0423_193680 PBMC +5875 CAPEGGSVYRPLTF TRAV17*01 TRAJ11*01 HLA-A*02:01 B2M MHCI FLYALALLL LMP2 EBV PMID:34811538 tetramer-sort yes amplicon-seq effector memory T cells T1D T1D_6 chip0423_6462 PBMC +5876 CIVREGGGADGLTF TRAV26-1*01 TRAJ45*01 CASSLAVGEGPQHF TRBV7-9*01 TRBJ1-5*01 HLA-B*08:01 B2M MHCI RAKFKQLL BZLF1 EBV PMID:34811538 tetramer-sort yes amplicon-seq effector memory T cells T1D T1D_4 chip0423_261484 PBMC +5877 CAVGAGGGARMLVF TRAV8-6*01 TRAJ54*01 HLA-B*08:01 B2M MHCI RAKFKQLL BZLF1 EBV PMID:34811538 tetramer-sort yes amplicon-seq effector memory T cells T1D T1D_4 chip0423_222504 PBMC +5879 CAEMETSYDKVIF TRAV13-2*01 TRAJ50*01 CASSSLSGGAGNEQFF TRBV7-9*01 TRBJ2-1*01 HLA-B*08:01 B2M MHCI RAKFKQLL BZLF1 EBV PMID:34811538 tetramer-sort yes amplicon-seq effector T cells T1D T1D_5 chip0423_251374 PBMC +5880 CADTNSGGYQKVTF TRAV1-1*01 TRAJ13*01 HLA-A*01:01 B2M MHCI CTELKLSDY NP InfluenzaA PMID:34811538 tetramer-sort yes amplicon-seq transitional T cells between effector and memory populations healthy healthy_3 chip0423_114126 PBMC +5881 CALSFSGYSTLTF TRAV9-2*01 TRAJ11*01 CASTGPGQGPTSFEQFF TRBV2*01 TRBJ2-1*01 HLA-B*08:01 B2M MHCI YAKWKLCSA ZNT8 HomoSapiens PMID:34811538 tetramer-sort yes amplicon-seq transitional T cells between effector and memory populations T1D T1D_5 chip0423_33511 PBMC +5882 CAASERR??aSQGILFF TRAV23/DV6*01 TRAJ42*01 CSVGTGGTNEKLFF TRBV29-1*01 TRBJ1-4*01 HLA-A*02:01 B2M MHCI GLCTLVAML BLMF1 EBV PMID:34811538 tetramer-sort yes amplicon-seq effector T cells T1D T1D_4 chip0423_306474 PBMC +5883 CASSETWGAPLHF TRBV2*01 TRBJ1-6*01 HLA-A*01:01 B2M MHCI CTELKLSDY NP InfluenzaA PMID:34811538 tetramer-sort yes amplicon-seq transitional T cells between effector and memory populations healthy healthy_3 chip0423_807061 PBMC +5884 CPGSDA*??cQGGKPMF TRAV8-6*01 TRAJ23*01 CASSLPSLEFGYEQYF TRBV11-2*01 TRBJ2-7*01 HLA-B*08:01 B2M MHCI QAKWRLQTL EBNA3A EBV PMID:34811538 tetramer-sort yes amplicon-seq Naive T cells T1D T1D_6 chip0423_248230 PBMC +5885 CAVPDSNAGKSTF TRAV21*01 TRAJ27*01 HLA-A*02:01 B2M MHCI GILGFVFTL M1 InfluenzaA PMID:34811538 tetramer-sort yes amplicon-seq transitional T cells between effector and memory populations T1D T1D_6 chip0423_772008 PBMC +5886 CASSQSPGGIAFF TRBV14*01 TRBJ1-1*01 HLA-A*02:01 B2M MHCI GLCTLVAML BLMF1 EBV PMID:34811538 tetramer-sort yes amplicon-seq effector memory T cells T1D T1D_6 chip0423_684997 PBMC +5887 CAEMETSYDKVIF TRAV13-2*01 TRAJ50*01 CASSSLSGGAGNEQFF TRBV7-9*01 TRBJ2-1*01 HLA-B*08:01 B2M MHCI RAKFKQLL BZLF1 EBV PMID:34811538 tetramer-sort yes amplicon-seq effector T cells T1D T1D_5 chip0423_277749 PBMC +5889 CAVSDGEGAQKLVF TRAV8-6*01 TRAJ54*01 CASSLTVLAGPNTEAFF TRBV7-3*01 TRBJ1-1*01 HLA-B*08:01 B2M MHCI RAKFKQLL BZLF1 EBV PMID:34811538 tetramer-sort yes amplicon-seq effector memory T cells T1D T1D_4 chip0423_233742 PBMC +5890 CAGNYGGSQGNLIF TRAV25*01 TRAJ42*01 CASSTRSTGELFF TRBV19*01 TRBJ2-2*01 HLA-A*02:01 B2M MHCI GILGFVFTL M1 InfluenzaA PMID:34811538 tetramer-sort yes amplicon-seq transitional T cells between effector and memory populations T1D T1D_4 chip0423_448081 PBMC +5891 CALSEDSWGKLQF TRAV19*01 TRAJ24*01 CASGFMNTEAFF TRBV19*01 TRBJ1-1*01 HLA-A*02:01 B2M MHCI CLGGLLTMV LMP2A EBV PMID:34811538 tetramer-sort yes amplicon-seq Naive T cells T1D T1D_6 chip0423_534162 PBMC +5892 CAPVSDNDMRF TRAV16*01 TRAJ43*01 CASSLVVSHGELFF TRBV7-2*01 TRBJ2-2*01 HLA-B*08:01 B2M MHCI RAKFKQLL BZLF1 EBV PMID:34811538 tetramer-sort yes amplicon-seq effector memory T cells T1D T1D_4 chip0423_27049 PBMC +5893 CAMSEDGF TRAV12-3*01 TRAJ37*01 CASSPGPNTEAFF TRBV4-2*01 TRBJ1-1*01 HLA-B*08:01 B2M MHCI RAKFKQLL BZLF1 EBV PMID:34811538 tetramer-sort yes amplicon-seq effector memory T cells T1D T1D_4 chip0423_681841 PBMC +5894 CASSWLGDRYNSPLHF TRBV7-9*01 TRBJ1-6*01 HLA-B*08:01 B2M MHCI RAKFKQLL BZLF1 EBV PMID:34811538 tetramer-sort yes amplicon-seq effector memory T cells T1D T1D_5 chip0423_881637 PBMC +5895 CAAAETSYDKVIF TRAV13-1*01 TRAJ50*01 CASQLAGGTGELFF TRBV24-1*01 TRBJ2-2*01 HLA-B*08:01 B2M MHCI RAKFKQLL BZLF1 EBV PMID:34811538 tetramer-sort yes amplicon-seq effector memory T cells T1D T1D_5 chip0423_677705 PBMC +5896 CILPLAGGTSYGKLTF TRAV4*01 TRAJ52*01 CASSLGQAYEQYF TRBV7-8*01 TRBJ2-7*01 HLA-B*08:01 B2M MHCI FLRGRAYGL EBNA3A EBV PMID:34811538 tetramer-sort yes amplicon-seq effector memory T cells T1D T1D_6 chip0423_540470 PBMC +5897 CATEGGSGYSTLTF TRAV17*01 TRAJ11*01 CASSYQGGSYGYTF TRBV6-5*01 TRBJ1-2*01 HLA-A*02:01 B2M MHCI FLYALALLL LMP2 EBV PMID:34811538 tetramer-sort yes amplicon-seq transitional T cells between effector and memory populations T1D T1D_4 chip0423_836078 PBMC +5899 CSAGRDGTNEKLFF TRBV29-1*01 TRBJ1-4*01 HLA-A*02:01 B2M MHCI GLCTLVAML BLMF1 EBV PMID:34811538 tetramer-sort yes amplicon-seq effector memory T cells T1D T1D_6 chip0423_45025 PBMC +5900 CSAGRDGTNEKLFF TRBV29-1*01 TRBJ1-4*01 HLA-A*02:01 B2M MHCI GLCTLVAML BLMF1 EBV PMID:34811538 tetramer-sort yes amplicon-seq effector T cells T1D T1D_6 chip0423_197538 PBMC +5901 CAMRAIEGANNLFF TRAV14/DV4*01 TRAJ36*01 CANSLSSGGRGEQYF TRBV4-1*01 TRBJ2-7*01 HLA-B*08:01 B2M MHCI RAKFKQLL BZLF1 EBV PMID:34811538 tetramer-sort yes amplicon-seq effector memory T cells T1D T1D_5 chip0423_202070 PBMC +5902 CAYSQMDSSYKLIF TRAV38-1*01 TRAJ12*01 CASNTGTGEDYGYTF TRBV5-1*01 TRBJ1-2*01 HLA-A*01:01 B2M MHCI LVSDGGPNLY PB1 InfluenzaA PMID:34811538 tetramer-sort yes amplicon-seq Naive T cells T1D T1D_5 chip0423_732371 PBMC +5903 CASSQVNNPGDGYTF TRBV14*01 TRBJ1-2*01 HLA-B*08:01 B2M MHCI QAKWRLQTL EBNA3A EBV PMID:34811538 tetramer-sort yes amplicon-seq effector memory T cells T1D T1D_4 chip0423_74534 PBMC +5904 CATAAPDRGPTLGRLYL TRAV17*01 TRAJ18*01 HLA-A*01:01 B2M MHCI LTSLTILQLY G6PC2 HomoSapiens PMID:34811538 tetramer-sort yes amplicon-seq effector T cells tet_neg chip0423_507915 PBMC +5905 CLVGASYYNQGGKLIF TRAV4*01 TRAJ23*01 CASSLGQAYEQYF TRBV7-8*01 TRBJ2-7*01 HLA-B*08:01 B2M MHCI FLRGRAYGL EBNA3A EBV PMID:34811538 tetramer-sort yes amplicon-seq effector memory T cells T1D T1D_6 chip0423_36021 PBMC +5906 CAVRDPETKTSYDKVIF TRAV3*01 TRAJ50*01 CASSLRFGQPQHF TRBV12-3*01,TRBV12-4*01 TRBJ1-5*01 HLA-A*01:01 B2M MHCI HSNLNDATY NP InfluenzaA PMID:34811538 tetramer-sort yes amplicon-seq Naive T cells T1D T1D_6 chip0423_849827 PBMC +5907 CASSQVNNPGDGYTF TRBV14*01 TRBJ1-2*01 HLA-B*08:01 B2M MHCI QAKWRLQTL EBNA3A EBV PMID:34811538 tetramer-sort yes amplicon-seq effector memory T cells T1D T1D_4 chip0423_115499 PBMC +5908 CAVSDGEGAQKLVF TRAV8-6*01 TRAJ54*01 CASSLTVLAGPNTEAFF TRBV7-3*01 TRBJ1-1*01 HLA-B*08:01 B2M MHCI RAKFKQLL BZLF1 EBV PMID:34811538 tetramer-sort yes amplicon-seq effector memory T cells T1D T1D_4 chip0423_354664 PBMC +5909 CAVNTDTLIF TRAV23/DV6*01 TRAJ34*01 CASSEALLGLDEQFF TRBV2*01 TRBJ2-1*01 HLA-A*02:01 B2M MHCI LLAGIGTVPI PGT HomoSapiens PMID:34811538 tetramer-sort yes amplicon-seq Naive T cells healthy healthy_3 chip0423_469891 PBMC +5910 CIVREGGDADGLTF TRAV26-1*01 TRAJ45*01 CASSLAVGEGPQHF TRBV7-9*01 TRBJ1-5*01 HLA-B*08:01 B2M MHCI RAKFKQLL BZLF1 EBV PMID:34811538 tetramer-sort yes amplicon-seq effector memory T cells T1D T1D_4 chip0423_208198 PBMC +5911 CASSHQEGAIQPQHF TRBV4-1*01 TRBJ1-5*01 HLA-B*08:01 B2M MHCI RAKFKQLL BZLF1 EBV PMID:34811538 tetramer-sort yes amplicon-seq effector memory T cells T1D T1D_5 chip0423_32496 PBMC +5912 CVVNPSRGKAAGNSLTF TRAV12-1*01 TRAJ17*01 CASSTRSAYEQYF TRBV19*01 TRBJ2-7*01 HLA-A*02:01 B2M MHCI GILGFVFTL M1 InfluenzaA PMID:34811538 tetramer-sort yes amplicon-seq transitional T cells between effector and memory populations healthy healthy_4 chip0423_670010 PBMC +5913 CAAAETSYDKVIF TRAV13-1*01 TRAJ50*01 CAGQLAGGTGALFF TRBV24-1*01 TRBJ2-2*01 HLA-B*08:01 B2M MHCI RAKFKQLL BZLF1 EBV PMID:34811538 tetramer-sort yes amplicon-seq effector memory T cells T1D T1D_5 chip0423_581044 PBMC +5914 CSAGNGEGYEQYF TRBV29-1*01 TRBJ2-7*01 HLA-B*08:01 B2M MHCI RAKFKQLL BZLF1 EBV PMID:34811538 tetramer-sort yes amplicon-seq effector memory T cells T1D T1D_4 chip0423_546632 PBMC +5915 CAVNRNYQLIW TRAV8-1*01 TRAJ33*01 CASRGQLGGNQPQHF TRBV28*01 TRBJ1-5*01 HLA-A*02:01 B2M MHCI YVLDHLIVV BRLF1 EBV PMID:34811538 tetramer-sort yes amplicon-seq effector memory T cells T1D T1D_4 chip0423_113899 PBMC +5916 CAASETSYDKVIF TRAV13-1*01 TRAJ50*01 CASSRLGGETGELFF TRBV7-2*01 TRBJ2-2*01 HLA-B*08:01 B2M MHCI RAKFKQLL BZLF1 EBV PMID:34811538 tetramer-sort yes amplicon-seq effector T cells T1D T1D_5 chip0423_464862 PBMC +5917 CASSLTGPIPSTDTQYF TRBV27*01 TRBJ2-3*01 HLA-B*08:01 B2M MHCI QAKWRLQTL EBNA3A EBV PMID:34811538 tetramer-sort yes amplicon-seq effector memory T cells T1D T1D_4 chip0423_84171 PBMC +5918 CALTTYGQNFVF TRAV38-1*01 TRAJ26*01 CSASRDSYEQYF TRBV20-1*01 TRBJ2-7*01 HLA-A*02:01 B2M MHCI YLLEMLWRL LMP1 EBV PMID:34811538 tetramer-sort yes amplicon-seq central memory T cells T1D T1D_4 chip0423_49658 PBMC +5919 CAATETSYDKVIF TRAV13-1*01 TRAJ50*01 CSAGGNTEAFF TRBV29-1*01 TRBJ1-1*01 HLA-B*08:01 B2M MHCI RAKFKQLL BZLF1 EBV PMID:34811538 tetramer-sort yes amplicon-seq effector memory T cells T1D T1D_5 chip0423_719877 PBMC +5920 CASSVLGGTSTEAFF TRBV7-9*01 TRBJ1-1*01 HLA-B*08:01 B2M MHCI RAKFKQLL BZLF1 EBV PMID:34811538 tetramer-sort yes amplicon-seq effector T cells T1D T1D_5 chip0423_161405 PBMC +5922 CSAGRDGTNEKLFF TRBV29-1*01 TRBJ1-4*01 HLA-A*02:01 B2M MHCI GLCTLVAML BLMF1 EBV PMID:34811538 tetramer-sort yes amplicon-seq effector memory T cells T1D T1D_6 chip0423_565864 PBMC +5924 CASSLAVGEGPQHF TRBV7-9*01 TRBJ1-5*01 HLA-B*08:01 B2M MHCI RAKFKQLL BZLF1 EBV PMID:34811538 tetramer-sort yes amplicon-seq effector memory T cells T1D T1D_4 chip0423_745887 PBMC +5925 CILPLAGGTSYGKLTF TRAV26-2*01 TRAJ52*01 CASSLGQAYEQYF TRBV7-8*01 TRBJ2-7*01 HLA-B*08:01 B2M MHCI FLRGRAYGL EBNA3A EBV PMID:34811538 tetramer-sort yes amplicon-seq effector memory T cells T1D T1D_6 chip0423_76575 PBMC +5926 CAVNMPTGANSKLTF TRAV12-2*01 TRAJ56*01 CSAREGGVAEDYNEQFF TRBV20-1*01 TRBJ2-1*01 HLA-A*01:01 B2M MHCI STANTNMFTY GAD2 HomoSapiens PMID:34811538 tetramer-sort yes amplicon-seq transitional T cells between effector and memory populations T1D T1D_5 chip0423_384366 PBMC +5927 CALTTYGQNFVF TRAV38-1*01 TRAJ26*01 CSASRDSYEQYF TRBV20-1*01 TRBJ2-7*01 HLA-A*02:01 B2M MHCI YLLEMLWRL LMP1 EBV PMID:34811538 tetramer-sort yes amplicon-seq effector memory T cells T1D T1D_4 chip0423_441621 PBMC +5928 CASSLGQAYEQYF TRBV7-8*01 TRBJ2-7*01 HLA-B*08:01 B2M MHCI FLRGRAYGL EBNA3A EBV PMID:34811538 tetramer-sort yes amplicon-seq effector memory T cells T1D T1D_6 chip0423_406028 PBMC +5929 CASQLAGGTGELFF TRBV24-1*01 TRBJ2-2*01 HLA-B*08:01 B2M MHCI RAKFKQLL BZLF1 EBV PMID:34811538 tetramer-sort yes amplicon-seq effector T cells T1D T1D_5 chip0423_391394 PBMC +5930 CIVREGGGADGLPF TRAV26-1*01 TRAJ45*01 CASSLAVGEGPQHF TRBV7-9*01 TRBJ1-5*01 HLA-B*08:01 B2M MHCI RAKFKQLL BZLF1 EBV PMID:34811538 tetramer-sort yes amplicon-seq effector T cells T1D T1D_4 chip0423_651553 PBMC +5931 CAAAETSYDKVIF TRAV13-1*01 TRAJ50*01 CASQLAGGTGELFF TRBV24-1*01 TRBJ2-2*01 HLA-B*08:01 B2M MHCI RAKFKQLL BZLF1 EBV PMID:34811538 tetramer-sort yes amplicon-seq effector T cells T1D T1D_5 chip0423_181943 PBMC +5932 CSVGGNTEAFF TRBV29-1*01 TRBJ1-1*01 HLA-B*08:01 B2M MHCI RAKFKQLL BZLF1 EBV PMID:34811538 tetramer-sort yes amplicon-seq effector memory T cells T1D T1D_5 chip0423_598413 PBMC +5933 CAGGGFESGGSDYKLTF TRAV21*01 TRAJ53*01 CASSLYNPNTEAFF TRBV5-1*01 TRBJ1-1*01 HLA-B*08:01 B2M MHCI RAKFKQLL BZLF1 EBV PMID:34811538 tetramer-sort yes amplicon-seq effector memory T cells T1D T1D_4 chip0423_323614 PBMC +5934 CASSEMGGAPLHF TRBV2*01 TRBJ1-6*01 HLA-A*01:01 B2M MHCI CTELKLSDY NP InfluenzaA PMID:34811538 tetramer-sort yes amplicon-seq effector memory T cells healthy healthy_3 chip0423_698504 PBMC +5935 CASSLGQAYEQYF TRBV7-8*01 TRBJ2-7*01 HLA-B*08:01 B2M MHCI FLRGRAYGL EBNA3A EBV PMID:34811538 tetramer-sort yes amplicon-seq effector memory T cells T1D T1D_6 chip0423_816571 PBMC +5936 CILPLAGGTSYGKLTF TRAV26-2*01 TRAJ52*01 CASSLGQAYEQYF TRBV7-8*01 TRBJ2-7*01 HLA-B*08:01 B2M MHCI FLRGRAYGL EBNA3A EBV PMID:34811538 tetramer-sort yes amplicon-seq effector memory T cells T1D T1D_6 chip0423_459344 PBMC +5937 CALRALVGANNLFF TRAV14/DV4*01 TRAJ36*01 CASSFTGNTGELFF TRBV7-9*01 TRBJ2-2*01 HLA-B*08:01 B2M MHCI RAKFKQLL BZLF1 EBV PMID:34811538 tetramer-sort yes amplicon-seq effector memory T cells T1D T1D_5 chip0423_644562 PBMC +5938 CAAKETSYDKVIF TRAV13-1*01 TRAJ50*01 CASSLLGRSNTEAFF TRBV7-9*01 TRBJ1-1*01 HLA-B*08:01 B2M MHCI RAKFKQLL BZLF1 EBV PMID:34811538 tetramer-sort yes amplicon-seq effector T cells T1D T1D_5 chip0423_818170 PBMC +5939 CASSLGQAYEQYF TRBV7-8*01 TRBJ2-7*01 HLA-B*08:01 B2M MHCI FLRGRAYGL EBNA3A EBV PMID:34811538 tetramer-sort yes amplicon-seq effector memory T cells T1D T1D_6 chip0423_303384 PBMC +5940 CASSQVNNPGDGYTF TRBV14*01 TRBJ1-2*01 HLA-B*08:01 B2M MHCI QAKWRLQTL EBNA3A EBV PMID:34811538 tetramer-sort yes amplicon-seq effector memory T cells T1D T1D_4 chip0423_401765 PBMC +5941 CALSEALWYAGNMLTF TRAV19*01 TRAJ39*01 CASSRQSIYEQYF TRBV28*01 TRBJ2-7*01 HLA-B*08:01 B2M MHCI QAKWRLQTL EBNA3A EBV PMID:34811538 tetramer-sort yes amplicon-seq transitional T cells between effector and memory populations T1D T1D_4 chip0423_178445 PBMC +5942 CASSPDGSTGELFF TRBV12-3*01,TRBV12-4*01 TRBJ2-2*01 HLA-B*08:01 B2M MHCI RAKFKQLL BZLF1 EBV PMID:34811538 tetramer-sort yes amplicon-seq effector memory T cells T1D T1D_5 chip0423_525549 PBMC +5943 CASSLPPW??gAAYNEQFF TRBV4-3*01 TRBJ2-1*01 HLA-B*08:01 B2M MHCI FLRGRAYGL EBNA3A EBV PMID:34811538 tetramer-sort yes amplicon-seq effector T cells T1D T1D_6 chip0423_524777 PBMC +5944 CASSMMTGDSYNSPLHF TRBV19*01 TRBJ1-6*01 HLA-A*01:01 B2M MHCI CTELKLSDY NP InfluenzaA PMID:34811538 tetramer-sort yes amplicon-seq transitional T cells between effector and memory populations T1D T1D_5 chip0423_830428 PBMC +5945 CAVRAPPWAAPIIF TRAV3*01 TRAJ30*01 CASSLGGGEGASEQFF TRBV7-6*01 TRBJ2-1*01 HLA-B*08:01 B2M MHCI FLRGRAYGL EBNA3A EBV PMID:34811538 tetramer-sort yes amplicon-seq effector memory T cells T1D T1D_4 chip0423_174768 PBMC +5946 CILPLAGGTSHGKLTF TRAV26-2*01 TRAJ52*01 CASSLGQAYEQYF TRBV7-8*01 TRBJ2-7*01 HLA-B*08:01 B2M MHCI FLRGRAYGL EBNA3A EBV PMID:34811538 tetramer-sort yes amplicon-seq effector T cells T1D T1D_6 chip0423_134750 PBMC +5947 CSAGRDGTNEKLFF TRBV29-1*01 TRBJ1-4*01 HLA-A*02:01 B2M MHCI GLCTLVAML BLMF1 EBV PMID:34811538 tetramer-sort yes amplicon-seq effector memory T cells T1D T1D_6 chip0423_570636 PBMC +5948 CILPLAGGTSYGKLTF TRAV26-2*01 TRAJ52*01 CASSLGQAYEQYF TRBV7-8*01 TRBJ2-7*01 HLA-B*08:01 B2M MHCI FLRGRAYGL EBNA3A EBV PMID:34811538 tetramer-sort yes amplicon-seq effector memory T cells T1D T1D_6 chip0423_176101 PBMC +5950 CAAMETSYDKVIF TRAV13-1*01 TRAJ50*01 CASSYLDRENTEAFF TRBV7-2*01 TRBJ1-1*01 HLA-B*08:01 B2M MHCI RAKFKQLL BZLF1 EBV PMID:34811538 tetramer-sort yes amplicon-seq effector memory T cells T1D T1D_5 chip0423_806867 PBMC +5951 CAASDRLPGGSYIPTF TRAV13-1*01 TRAJ6*01 CSATNQYDGPDTEAFF TRBV20-1*01 TRBJ1-1*01 HLA-B*08:01 B2M MHCI RAKFKQLL BZLF1 EBV PMID:34811538 tetramer-sort yes amplicon-seq effector memory T cells T1D T1D_4 chip0423_204208 PBMC +5952 CIVREGGGADGLTF TRAV26-1*01 TRAJ45*01 HLA-B*08:01 B2M MHCI RAKFKQLL BZLF1 EBV PMID:34811538 tetramer-sort yes amplicon-seq effector memory T cells T1D T1D_4 chip0423_435458 PBMC +5953 CILPLAGGTSYGKLTF TRAV26-2*01 TRAJ52*01 CASSLGQAYEQYF TRBV7-8*01 TRBJ2-7*01 HLA-B*08:01 B2M MHCI FLRGRAYGL EBNA3A EBV PMID:34811538 tetramer-sort yes amplicon-seq effector memory T cells T1D T1D_6 chip0423_761419 PBMC +5954 CSATNQYDGPDTEAFF TRBV20-1*01 TRBJ1-1*01 HLA-B*08:01 B2M MHCI RAKFKQLL BZLF1 EBV PMID:34811538 tetramer-sort yes amplicon-seq effector memory T cells T1D T1D_4 chip0423_481382 PBMC +5955 CALTTYGQNFVF TRAV38-1*01 TRAJ26*01 CSASRASYEQYF TRBV20-1*01 TRBJ2-7*01 HLA-A*02:01 B2M MHCI YLLEMLWRL LMP1 EBV PMID:34811538 tetramer-sort yes amplicon-seq central memory T cells T1D T1D_4 chip0423_194590 PBMC +5956 CAASETSYDKVIF TRAV13-1*01 TRAJ50*01 HLA-B*08:01 B2M MHCI RAKFKQLL BZLF1 EBV PMID:34811538 tetramer-sort yes amplicon-seq effector memory T cells T1D T1D_5 chip0423_445228 PBMC +5958 CAASETSYDKVIF TRAV13-1*01 TRAJ50*01 CASSFLGQMNTEAFF TRBV7-9*01 TRBJ1-1*01 HLA-B*08:01 B2M MHCI RAKFKQLL BZLF1 EBV PMID:34811538 tetramer-sort yes amplicon-seq effector memory T cells T1D T1D_5 chip0423_736604 PBMC +5959 CASSLYKSSGELFF TRBV14*01 TRBJ2-2*01 HLA-B*08:01 B2M MHCI TLKKMREI GAD2 HomoSapiens PMID:34811538 tetramer-sort yes amplicon-seq Naive T cells T1D T1D_6 chip0423_327390 PBMC +5960 CALSEAGGQKLLF TRAV19*01 TRAJ16*01 CASSMTEQVLNTF TRBV12-3*01,TRBV12-4*01 TRBJ1-2*01 HLA-A*01:01 B2M MHCI VTDAAHLLI ZNT8 HomoSapiens PMID:34811538 tetramer-sort yes amplicon-seq Naive T cells T1D T1D_5 chip0423_109559 PBMC +5961 CAVPGGSQGNLIF TRAV8-3*01 TRAJ42*01 CASSYSSTGEYF TRBV6-2*01,TRBV6-3*01 TRBJ2-7*01 HLA-A*02:01 B2M MHCI YLLEMLWRL LMP1 EBV PMID:34811538 tetramer-sort yes amplicon-seq central memory T cells T1D T1D_4 chip0423_218887 PBMC +5962 CASSLAVGEGPQHF TRBV7-9*01 TRBJ1-5*01 HLA-B*08:01 B2M MHCI RAKFKQLL BZLF1 EBV PMID:34811538 tetramer-sort yes amplicon-seq effector memory T cells T1D T1D_4 chip0423_752637 PBMC +5963 CAASKIEga?GGADGLTF TRAV23/DV6*01 TRAJ45*01 CASSLGQAYEQYF TRBV7-8*01 TRBJ2-7*01 HLA-B*08:01 B2M MHCI FLRGRAYGL EBNA3A EBV PMID:34811538 tetramer-sort yes amplicon-seq effector T cells T1D T1D_6 chip0423_150427 PBMC +5964 CASSQVNNPGDGYTF TRBV14*01 TRBJ1-2*01 HLA-B*08:01 B2M MHCI QAKWRLQTL EBNA3A EBV PMID:34811538 tetramer-sort yes amplicon-seq effector memory T cells T1D T1D_4 chip0423_595583 PBMC +5965 CAASETSYDKVIF TRAV13-1*01 TRAJ50*01 CASSPLGSENSPLHF TRBV7-9*01 TRBJ1-6*01 HLA-B*08:01 B2M MHCI RAKFKQLL BZLF1 EBV PMID:34811538 tetramer-sort yes amplicon-seq effector memory T cells T1D T1D_5 chip0423_711247 PBMC +5966 CILPLAGGTSYGKLTF TRAV26-2*01 TRAJ52*01 CASSLGQAYEQYF TRBV7-8*01 TRBJ2-7*01 HLA-B*08:01 B2M MHCI FLRGRAYGL EBNA3A EBV PMID:34811538 tetramer-sort yes amplicon-seq effector memory T cells T1D T1D_4 chip0423_429197 PBMC +5967 CAVRDDMRF TRAV12-2*01 TRAJ43*01 CASSPRLLSGTGELFF TRBV7-9*01 TRBJ2-2*01 HLA-A*02:01 B2M MHCI LLAGIGTVPI PGT HomoSapiens PMID:34811538 tetramer-sort yes amplicon-seq central memory T cells healthy healthy_3 chip0423_650039 PBMC +5968 CASSLGQAYEQYF TRBV7-8*01 TRBJ2-7*01 HLA-B*08:01 B2M MHCI FLRGRAYGL EBNA3A EBV PMID:34811538 tetramer-sort yes amplicon-seq effector memory T cells T1D T1D_6 chip0423_52574 PBMC +5969 CASSLAVGEGPQHF TRBV7-9*01 TRBJ1-5*01 HLA-B*08:01 B2M MHCI RAKFKQLL BZLF1 EBV PMID:34811538 tetramer-sort yes amplicon-seq effector memory T cells T1D T1D_4 chip0423_31551 PBMC +5970 CASSLELGLPYEQYF TRBV5-1*01 TRBJ2-7*01 HLA-B*08:01 B2M MHCI QAKWRLQTL EBNA3A EBV PMID:34811538 tetramer-sort yes amplicon-seq transitional T cells between effector and memory populations T1D T1D_4 chip0423_591082 PBMC +5971 CALSSALGg?gAGCFPLTV TRAV9-2*01 TRAJ28*01 CASSIRSAYEQYF TRBV19*01 TRBJ2-7*01 HLA-A*02:01 B2M MHCI GILGFVFTL M1 InfluenzaA PMID:34811538 tetramer-sort yes amplicon-seq transitional T cells between effector and memory populations T1D T1D_6 chip0423_315877 PBMC +5972 CASSLLGRSHTAAFF TRBV7-9*01 TRBJ1-1*01 HLA-A*02:01 B2M MHCI LLAGIGTVPI PGT HomoSapiens PMID:34811538 tetramer-sort yes amplicon-seq Naive T cells healthy healthy_4 chip0423_246778 PBMC +5973 CSAGRDGTNEKLFF TRBV29-1*01 TRBJ1-4*01 HLA-A*02:01 B2M MHCI GLCTLVAML BLMF1 EBV PMID:34811538 tetramer-sort yes amplicon-seq effector memory T cells T1D T1D_6 chip0423_766057 PBMC +5974 CASSLSSGGRGEQYF TRBV4-1*01 TRBJ2-7*01 HLA-B*08:01 B2M MHCI RAKFKQLL BZLF1 EBV PMID:34811538 tetramer-sort yes amplicon-seq effector T cells T1D T1D_5 chip0423_498964 PBMC +5975 CILPLAGGTSYGKLTF TRAV26-2*01 TRAJ52*01 CASSLGQAYEQYF TRBV7-8*01 TRBJ2-7*01 HLA-B*08:01 B2M MHCI FLRGRAYGL EBNA3A EBV PMID:34811538 tetramer-sort yes amplicon-seq effector memory T cells T1D T1D_6 chip0423_714402 PBMC +5976 CILPLAGGTSYGKLTF TRAV26-2*01 TRAJ52*01 CASSLGQAYEQYF TRBV7-8*01 TRBJ2-7*01 HLA-B*08:01 B2M MHCI FLRGRAYGL EBNA3A EBV PMID:34811538 tetramer-sort yes amplicon-seq effector memory T cells T1D T1D_6 chip0423_679250 PBMC +5977 CASSDIREGQGEAFF TRBV10-2*01 TRBJ1-1*01 HLA-B*08:01 B2M MHCI QAKWRLQTL EBNA3A EBV PMID:34811538 tetramer-sort yes amplicon-seq central memory T cells T1D T1D_6 chip0423_718966 PBMC +5978 CALRPStt?GNALLPF TRAV19*01 TRAJ48*01 CASSSLGQRETQYF TRBV7-9*01 TRBJ2-5*01 HLA-B*08:01 B2M MHCI RAKFKQLL BZLF1 EBV PMID:34811538 tetramer-sort yes amplicon-seq effector memory T cells T1D T1D_5 chip0423_418171 PBMC +5979 CAVTVGF TRAV12-2*01 TRAJ37*01 CASSATSLPLNEQFF TRBV9*01 TRBJ2-1*01 HLA-A*02:01 B2M MHCI ALAGIGILTV MART1 HomoSapiens PMID:34811538 tetramer-sort yes amplicon-seq central memory T cells T1D T1D_6 chip0423_357804 PBMC +5980 CSATDTLQYGYTF TRBV20-1*01 TRBJ1-2*01 HLA-A*02:01 B2M MHCI YVLDHLIVV BRLF1 EBV PMID:34811538 tetramer-sort yes amplicon-seq effector memory T cells T1D T1D_4 chip0423_159942 PBMC +5981 CASQGGSQGNLIF TRAV20*01 TRAJ42*01 CASSLGGQTETQYF TRBV13*01 TRBJ2-5*01 HLA-A*02:01 B2M MHCI TLLANVTAV VP6 RotavirusA PMID:34811538 tetramer-sort yes amplicon-seq transitional T cells between effector and memory populations T1D T1D_6 chip0423_832650 PBMC +5982 CAVNSGNTPLVF TRAV1-2*01 TRAJ29*01 CASSQVNNPGDGYTF TRBV14*01 TRBJ1-2*01 HLA-B*08:01 B2M MHCI QAKWRLQTL EBNA3A EBV PMID:34811538 tetramer-sort yes amplicon-seq effector memory T cells T1D T1D_4 chip0423_301622 PBMC +5983 CALSEGG*??cFGNEKLTF TRAV16*01 TRAJ48*01 CASSRIPGQGARPDPNTGELFF TRBV28*01 TRBJ2-2*01 HLA-B*08:01 B2M MHCI QAKWRLQTL EBNA3A EBV PMID:34811538 tetramer-sort yes amplicon-seq effector memory T cells T1D T1D_4 chip0423_752455 PBMC +5984 CAMRAIEGANNLFF TRAV14/DV4*01 TRAJ36*01 CASSLSSGGRGEQYF TRBV4-1*01 TRBJ2-7*01 HLA-B*08:01 B2M MHCI RAKFKQLL BZLF1 EBV PMID:34811538 tetramer-sort yes amplicon-seq effector memory T cells T1D T1D_5 chip0423_648130 PBMC +5985 CIVREGGGADGLTF TRAV26-1*01 TRAJ45*01 CASSLAVGEGPQHF TRBV7-9*01 TRBJ1-5*01 HLA-B*08:01 B2M MHCI RAKFKQLL BZLF1 EBV PMID:34811538 tetramer-sort yes amplicon-seq effector T cells T1D T1D_4 chip0423_705946 PBMC +5986 CASSLAVGEGPQHF TRBV7-9*01 TRBJ1-5*01 HLA-B*08:01 B2M MHCI RAKFKQLL BZLF1 EBV PMID:34811538 tetramer-sort yes amplicon-seq effector memory T cells T1D T1D_4 chip0423_539878 PBMC +5987 CASSLNPVLRLDTQYF TRBV28*01 TRBJ2-3*01 HLA-B*08:01 B2M MHCI QAKWRLQTL EBNA3A EBV PMID:34811538 tetramer-sort yes amplicon-seq effector memory T cells T1D T1D_4 chip0423_46248 PBMC +5988 CSAGRDGTNEKLFF TRBV29-1*01 TRBJ1-4*01 HLA-A*02:01 B2M MHCI GLCTLVAML BLMF1 EBV PMID:34811538 tetramer-sort yes amplicon-seq effector T cells T1D T1D_6 chip0423_701047 PBMC +5989 CASSRIPGQGARPDPNTGELFF TRBV28*01 TRBJ2-2*01 HLA-A*02:01 B2M MHCI CLGGLLTMV LMP2A EBV PMID:34811538 tetramer-sort yes amplicon-seq effector memory T cells T1D T1D_4 chip0423_358785 PBMC +5990 CIVREGGGADGLTF TRAV26-1*01 TRAJ45*01 CASSLAVGEGPQHF TRBV7-9*01 TRBJ1-5*01 HLA-B*08:01 B2M MHCI RAKFKQLL BZLF1 EBV PMID:34811538 tetramer-sort yes amplicon-seq effector memory T cells T1D T1D_4 chip0423_473360 PBMC +5991 CILPLAGGTSYGKLTF TRAV26-2*01 TRAJ52*01 CASSLGQAYEQYF TRBV7-8*01 TRBJ2-7*01 HLA-B*08:01 B2M MHCI FLRGRAYGL EBNA3A EBV PMID:34811538 tetramer-sort yes amplicon-seq effector T cells T1D T1D_6 chip0423_818844 PBMC +5993 CAATETSYDKVIF TRAV13-1*01 TRAJ50*01 CASSPPGGGNTGELFF TRBV18*01 TRBJ2-2*01 HLA-B*08:01 B2M MHCI RAKFKQLL BZLF1 EBV PMID:34811538 tetramer-sort yes amplicon-seq effector memory T cells T1D T1D_5 chip0423_202987 PBMC +5994 CASSAQGSNYGYTF TRBV9*01 TRBJ1-2*01 HLA-A*01:01 B2M MHCI QQDKHYDLSY GAD2 HomoSapiens PMID:34811538 tetramer-sort yes amplicon-seq Naive T cells T1D T1D_6 chip0423_674183 PBMC +5995 CAVNAFSGGYNKLIF TRAV8-1*01 TRAJ4*01 CASSQEDSRWEQFF TRBV14*01 TRBJ2-1*01 HLA-A*02:01 B2M MHCI YLLEMLWRL LMP1 EBV PMID:34811538 tetramer-sort yes amplicon-seq effector memory T cells T1D T1D_4 chip0423_406464 PBMC +5996 CASSPDGSTGELFF TRBV12-3*01,TRBV12-4*01 TRBJ2-2*01 HLA-B*08:01 B2M MHCI RAKFKQLL BZLF1 EBV PMID:34811538 tetramer-sort yes amplicon-seq effector memory T cells T1D T1D_5 chip0423_606071 PBMC +5998 CAVRDTTWDDKIIF TRAV3*01 TRAJ30*01 CASSLGGGEGASEQFF TRBV7-6*01 TRBJ2-1*01 HLA-B*08:01 B2M MHCI FLRGRAYGL EBNA3A EBV PMID:34811538 tetramer-sort yes amplicon-seq effector memory T cells T1D T1D_4 chip0423_31921 PBMC +5999 CAVCAGVGALKLVF TRAV8-6*01 TRAJ54*01 HLA-B*08:01 B2M MHCI RAKFKQLL BZLF1 EBV PMID:34811538 tetramer-sort yes amplicon-seq effector memory T cells T1D T1D_4 chip0423_590571 PBMC +6000 CALTTYGQNFVF TRAV38-1*01 TRAJ26*01 CSASRVSYEQYF TRBV20-1*01 TRBJ2-7*01 HLA-A*02:01 B2M MHCI YLLEMLWRL LMP1 EBV PMID:34811538 tetramer-sort yes amplicon-seq central memory T cells T1D T1D_4 chip0423_76155 PBMC +6001 CASIVLGDPYNEQFF TRBV7-9*01 TRBJ2-1*01 HLA-B*08:01 B2M MHCI RAKFKQLL BZLF1 EBV PMID:34811538 tetramer-sort yes amplicon-seq effector memory T cells T1D T1D_5 chip0423_261427 PBMC +6002 CASSLLGGGESSGNTIYF TRBV11-1*01 TRBJ1-3*01 HLA-B*08:01 B2M MHCI RAKFKQLL BZLF1 EBV PMID:34811538 tetramer-sort yes amplicon-seq effector T cells T1D T1D_5 chip0423_180949 PBMC +6003 CASSLTALAGPNTEAFF TRBV7-3*01 TRBJ1-1*01 HLA-B*08:01 B2M MHCI RAKFKQLL BZLF1 EBV PMID:34811538 tetramer-sort yes amplicon-seq effector memory T cells T1D T1D_4 chip0423_767531 PBMC +6004 CAVRDDYGQNFVF TRAV3*01 TRAJ26*01 HLA-B*08:01 B2M MHCI RAKFKQLL BZLF1 EBV PMID:34811538 tetramer-sort yes amplicon-seq effector memory T cells T1D T1D_5 chip0423_327684 PBMC +6005 CIVRVVCac?GTASKLTF TRAV26-1*01 TRAJ44*01 CASSLAVGEGPQHF TRBV7-9*01 TRBJ1-5*01 HLA-B*08:01 B2M MHCI RAKFKQLL BZLF1 EBV PMID:34811538 tetramer-sort yes amplicon-seq effector memory T cells T1D T1D_4 chip0423_683868 PBMC +6006 CAEDSSARLVF TRAV13-2*01,TRAV5*01 TRAJ31*01 CSARDQTGNGYTF TRBV20-1*01 TRBJ1-2*01 HLA-A*02:01 B2M MHCI GLCTLVAML BLMF1 EBV PMID:34811538 tetramer-sort yes amplicon-seq effector memory T cells T1D T1D_4 chip0423_314804 PBMC +6007 CASLKPDSTGELFF TRBV2*01 TRBJ2-2*01 HLA-B*08:01 B2M MHCI RAKFKQLL BZLF1 EBV PMID:34811538 tetramer-sort yes amplicon-seq effector memory T cells T1D T1D_5 chip0423_165685 PBMC +6008 CAISEIGGLYEKQFL TRBV10-3*01 TRBJ1-4*01 HLA-A*02:01 B2M MHCI YVLDHLIVV BRLF1 EBV PMID:34811538 tetramer-sort yes amplicon-seq central memory T cells T1D T1D_4 chip0423_755619 PBMC +6009 CASSLGQAYEQYF TRBV7-8*01 TRBJ2-7*01 HLA-B*08:01 B2M MHCI FLRGRAYGL EBNA3A EBV PMID:34811538 tetramer-sort yes amplicon-seq effector memory T cells T1D T1D_6 chip0423_52639 PBMC +6010 CAAAETSYDKVIF TRAV13-1*01 TRAJ50*01 CASQLAGGTGELFF TRBV24-1*01 TRBJ2-2*01 HLA-B*08:01 B2M MHCI RAKFKQLL BZLF1 EBV PMID:34811538 tetramer-sort yes amplicon-seq effector memory T cells T1D T1D_5 chip0423_723214 PBMC +6011 CAVSDGEGAQKLVF TRAV8-6*01 TRAJ54*01 CASSLTVLAGPNTEAFF TRBV7-3*01 TRBJ1-1*01 HLA-B*08:01 B2M MHCI RAKFKQLL BZLF1 EBV PMID:34811538 tetramer-sort yes amplicon-seq effector memory T cells T1D T1D_4 chip0423_121844 PBMC +6012 CIVREGGGADGLPF TRAV26-1*01 TRAJ45*01 CASSLAVGEGPQHF TRBV7-9*01 TRBJ1-5*01 HLA-B*08:01 B2M MHCI RAKFKQLL BZLF1 EBV PMID:34811538 tetramer-sort yes amplicon-seq effector T cells T1D T1D_4 chip0423_602467 PBMC +6013 CILPLAGGTSYGKLTF TRAV26-2*01 TRAJ52*01 CASSQGQAYEQYF TRBV7-8*01 TRBJ2-7*01 HLA-B*08:01 B2M MHCI FLRGRAYGL EBNA3A EBV PMID:34811538 tetramer-sort yes amplicon-seq effector memory T cells T1D T1D_4 chip0423_591424 PBMC +6014 CIVREGGGADGLTF TRAV26-1*01 TRAJ45*01 CASSLAVGEGPQHF TRBV7-9*01 TRBJ1-5*01 HLA-B*08:01 B2M MHCI RAKFKQLL BZLF1 EBV PMID:34811538 tetramer-sort yes amplicon-seq effector T cells T1D T1D_4 chip0423_302472 PBMC +6015 CILTETSYDKVIF TRAV26-2*01 TRAJ50*01 CASSPLGVRTEAFF TRBV7-9*01 TRBJ1-1*01 HLA-B*08:01 B2M MHCI RAKFKQLL BZLF1 EBV PMID:34811538 tetramer-sort yes amplicon-seq effector memory T cells T1D T1D_5 chip0423_127215 PBMC +6016 CALSELYNQGGKLIF TRAV19*01 TRAJ23*01 CASSVEGNIQYF TRBV9*01 TRBJ2-4*01 HLA-A*01:01 B2M MHCI ALASCMGLIY M1 InfluenzaA PMID:34811538 tetramer-sort yes amplicon-seq Naive T cells T1D T1D_6 chip0423_867259 PBMC +6017 CAVRILPNFGNEKLTF TRAV21*01 TRAJ48*01 CASTSSESVDGYTS TRBV5-4*01 TRBJ1-2*01 HLA-B*08:01 B2M MHCI QAKWRLQTL EBNA3A EBV PMID:34811538 tetramer-sort yes amplicon-seq effector memory T cells T1D T1D_6 chip0423_784610 PBMC +6018 CILPLAGGTSYGKLTF TRAV26-2*01 TRAJ52*01 CASSLGQAYEQYF TRBV7-8*01 TRBJ2-7*01 HLA-B*08:01 B2M MHCI FLRGRAYGL EBNA3A EBV PMID:34811538 tetramer-sort yes amplicon-seq effector memory T cells T1D T1D_6 chip0423_442608 PBMC +6019 CASSDIREGQGEAFF TRBV10-2*01 TRBJ1-1*01 HLA-B*08:01 B2M MHCI QAKWRLQTL EBNA3A EBV PMID:34811538 tetramer-sort yes amplicon-seq effector memory T cells T1D T1D_6 chip0423_474872 PBMC +6020 CAVKVWag??atSQKLLF TRAV8-4*01 TRAJ16*01 CASSDIREGQGEAFF TRBV10-2*01 TRBJ1-1*01 HLA-B*08:01 B2M MHCI QAKWRLQTL EBNA3A EBV PMID:34811538 tetramer-sort yes amplicon-seq central memory T cells T1D T1D_6 chip0423_211029 PBMC +6021 CP*g?gGGF TRAV23/DV6*01 TRAJ43*01 HLA-B*08:01 B2M MHCI RAKFKQLL BZLF1 EBV PMID:34811538 tetramer-sort yes amplicon-seq effector T cells T1D T1D_5 chip0423_183818 PBMC +6022 CASSQGQAYEQYF TRBV7-8*01 TRBJ2-7*01 HLA-B*08:01 B2M MHCI FLRGRAYGL EBNA3A EBV PMID:34811538 tetramer-sort yes amplicon-seq effector memory T cells T1D T1D_4 chip0423_574509 PBMC +6023 CSAGRDGTNEKLFF TRBV29-1*01 TRBJ1-4*01 HLA-A*02:01 B2M MHCI GLCTLVAML BLMF1 EBV PMID:34811538 tetramer-sort yes amplicon-seq effector memory T cells T1D T1D_6 chip0423_350497 PBMC +6024 CAVAETSNTGGFKTIF TRAV12-2*01 TRAJ9*01 CASSLMAGSTDTQYF TRBV27*01 TRBJ2-3*01 HLA-A*02:01 B2M MHCI YLQQNWWTL LMP1 EBV PMID:34811538 tetramer-sort yes amplicon-seq central memory T cells T1D T1D_4 chip0423_59017 PBMC +6025 CAYGQNFVF TRAV8-3*01 TRAJ26*01 CASSADSDYGYTF TRBV9*01 TRBJ1-2*01 HLA-A*02:01 B2M MHCI YLLEMLWRL LMP1 EBV PMID:34811538 tetramer-sort yes amplicon-seq effector memory T cells T1D T1D_4 chip0423_370004 PBMC +6026 CAMREGAETSYDKVIF TRAV14/DV4*01 TRAJ50*01 CASSLGQALGDTQYF TRBV19*01 TRBJ2-3*01 HLA-A*02:01 B2M MHCI GIIYIIYKL P3A CoxsackievirusB PMID:34811538 tetramer-sort yes amplicon-seq central memory T cells T1D T1D_4 chip0423_863756 PBMC +6027 CVVNSGAPMEYGNKLVF TRAV12-1*01 TRAJ47*01 HLA-A*01:01 B2M MHCI LTSLTILQLY G6PC2 HomoSapiens PMID:34811538 tetramer-sort yes amplicon-seq Naive T cells T1D T1D_6 chip0423_720707 PBMC +6028 CASSYRENTEAFF TRBV6-5*01 TRBJ1-1*01 HLA-A*02:01 B2M MHCI ALAGIGILTV MART1 HomoSapiens PMID:34811538 tetramer-sort yes amplicon-seq Naive T cells T1D T1D_4 chip0423_692643 PBMC +6029 CILPLAGGTSYGKLTF TRAV26-2*01 TRAJ52*01 CASSLGQAYEQYF TRBV7-8*01 TRBJ2-7*01 HLA-B*08:01 B2M MHCI FLRGRAYGL EBNA3A EBV PMID:34811538 tetramer-sort yes amplicon-seq effector T cells T1D T1D_6 chip0423_780343 PBMC +6030 CAASKFVgg?GGAVGLTF TRAV23/DV6*01 TRAJ45*01 CASSLGQAYEQYF TRBV7-8*01 TRBJ2-7*01 HLA-B*08:01 B2M MHCI FLRGRAYGL EBNA3A EBV PMID:34811538 tetramer-sort yes amplicon-seq effector T cells T1D T1D_6 chip0423_198106 PBMC +6032 CILPLAGGTSYGKLTF TRAV26-2*01 TRAJ52*01 CASSLGQAYEQYF TRBV7-8*01 TRBJ2-7*01 HLA-B*08:01 B2M MHCI FLRGRAYGL EBNA3A EBV PMID:34811538 tetramer-sort yes amplicon-seq effector memory T cells T1D T1D_6 chip0423_32477 PBMC +6033 CASSQVNNPGDGYTF TRBV14*01 TRBJ1-2*01 HLA-B*08:01 B2M MHCI QAKWRLQTL EBNA3A EBV PMID:34811538 tetramer-sort yes amplicon-seq effector memory T cells T1D T1D_4 chip0423_773230 PBMC +6034 CILPLAGGTSYGKLTF TRAV26-2*01 TRAJ52*01 CASSLGQAYEQYF TRBV7-8*01 TRBJ2-7*01 HLA-B*08:01 B2M MHCI FLRGRAYGL EBNA3A EBV PMID:34811538 tetramer-sort yes amplicon-seq effector memory T cells T1D T1D_6 chip0423_341531 PBMC +6035 CAVWRDGAYEQYF TRBV28*01 TRBJ2-7*01 HLA-A*02:01 B2M MHCI YLLEMLWRL LMP1 EBV PMID:34811538 tetramer-sort yes amplicon-seq effector memory T cells T1D T1D_4 chip0423_564628 PBMC +6036 CAVNKEAGTALIF TRAV12-2*01 TRAJ15*01 CASSLPGTSPGYTF TRBV7-6*01 TRBJ1-2*01 HLA-A*02:01 B2M MHCI RLLPLLALL PREINS HomoSapiens PMID:34811538 tetramer-sort yes amplicon-seq Naive T cells T1D T1D_6 chip0423_205562 PBMC +6037 CIVREGGGADGLPF TRAV26-1*01 TRAJ45*01 CASSLAVEEGPQHF TRBV7-9*01 TRBJ1-5*01 HLA-B*08:01 B2M MHCI RAKFKQLL BZLF1 EBV PMID:34811538 tetramer-sort yes amplicon-seq effector memory T cells T1D T1D_4 chip0423_699412 PBMC +6038 CLVGEINNDMRF TRAV4*01 TRAJ43*01 HLA-B*08:01 B2M MHCI RAKFKQLL BZLF1 EBV PMID:34811538 tetramer-sort yes amplicon-seq effector memory T cells T1D T1D_4 chip0423_110135 PBMC +6039 CVVSDMEYGNKLVF TRAV8-2*01 TRAJ47*01 CASSLVVSHGELFF TRBV7-2*01 TRBJ2-2*01 HLA-B*08:01 B2M MHCI RAKFKQLL BZLF1 EBV PMID:34811538 tetramer-sort yes amplicon-seq effector memory T cells T1D T1D_4 chip0423_87594 PBMC +6040 CASSLGGGEGASEQFF TRBV7-6*01 TRBJ2-1*01 HLA-B*08:01 B2M MHCI FLRGRAYGL EBNA3A EBV PMID:34811538 tetramer-sort yes amplicon-seq effector memory T cells T1D T1D_4 chip0423_793428 PBMC +6041 CASSQVTNPGDCYTF TRBV14*01 TRBJ1-2*01 HLA-B*08:01 B2M MHCI QAKWRLQTL EBNA3A EBV PMID:34811538 tetramer-sort yes amplicon-seq effector memory T cells T1D T1D_4 chip0423_606126 PBMC +6042 CASS*Kg?cTGELFF TRBV7-9*01 TRBJ2-2*01 HLA-B*08:01 B2M MHCI RAKFKQLL BZLF1 EBV PMID:34811538 tetramer-sort yes amplicon-seq transitional T cells between effector and memory populations T1D T1D_5 chip0423_356838 PBMC +6043 CAPSETSYDKVIF TRAV13-1*01 TRAJ50*01 CASSLVQGVHNEQFF TRBV7-9*01 TRBJ2-1*01 HLA-B*08:01 B2M MHCI RAKFKQLL BZLF1 EBV PMID:34811538 tetramer-sort yes amplicon-seq transitional T cells between effector and memory populations T1D T1D_5 chip0423_559914 PBMC +6044 CSVGTGGTNEKLFF TRBV29-1*01 TRBJ1-4*01 HLA-A*02:01 B2M MHCI GLCTLVAML BLMF1 EBV PMID:34811538 tetramer-sort yes amplicon-seq effector memory T cells T1D T1D_6 chip0423_852312 PBMC +6045 CASSFGRGGEQYF TRBV27*01 TRBJ2-7*01 HLA-B*08:01 B2M MHCI YLKTNLFL G6PC2 HomoSapiens PMID:34811538 tetramer-sort yes amplicon-seq Naive T cells T1D T1D_5 chip0423_469992 PBMC +6046 CVVLGGTDKLIF TRAV12-1*01 TRAJ34*01 CASSFGQNTGELFF TRBV27*01 TRBJ2-2*01 HLA-A*02:01 B2M MHCI GILGFVFTL M1 InfluenzaA PMID:34811538 tetramer-sort yes amplicon-seq transitional T cells between effector and memory populations T1D T1D_6 chip0423_307630 PBMC +6047 CAMREGEGGGFKTIF TRAV14/DV4*01 TRAJ9*01 CASSSGLAGGSHTGELFF TRBV11-1*01 TRBJ2-2*01 HLA-B*08:01 B2M MHCI RAKFKQLL BZLF1 EBV PMID:34811538 tetramer-sort yes amplicon-seq effector T cells T1D T1D_5 chip0423_606166 PBMC +6048 CILPLAGGTSYGKLTF TRAV26-2*01 TRAJ52*01 CASSLGQAYEQYF TRBV7-8*01 TRBJ2-7*01 HLA-B*08:01 B2M MHCI FLRGRAYGL EBNA3A EBV PMID:34811538 tetramer-sort yes amplicon-seq effector memory T cells T1D T1D_6 chip0423_346633 PBMC +6049 CILPLAGGTSYGKLTF TRAV26-2*01 TRAJ52*01 CASSLGQAYEQYF TRBV7-8*01 TRBJ2-7*01 HLA-B*08:01 B2M MHCI FLRGRAYGL EBNA3A EBV PMID:34811538 tetramer-sort yes amplicon-seq effector memory T cells T1D T1D_6 chip0423_66286 PBMC +6050 CASSVDR??gVAYAQYF TRBV2*01 TRBJ2-7*01 HLA-B*08:01 B2M MHCI FLRGRAYGL EBNA3A EBV PMID:34811538 tetramer-sort yes amplicon-seq effector memory T cells T1D T1D_6 chip0423_45814 PBMC +6051 CAAAETSYDKVIF TRAV13-1*01 TRAJ50*01 CASQLAGGTGELFF TRBV24-1*01 TRBJ2-2*01 HLA-B*08:01 B2M MHCI RAKFKQLL BZLF1 EBV PMID:34811538 tetramer-sort yes amplicon-seq transitional T cells between effector and memory populations T1D T1D_5 chip0423_708470 PBMC +6052 CASSLAGREGTQYF TRBV11-3*01 TRBJ2-3*01 HLA-B*08:01 B2M MHCI ELRSRYWAI NP InfluenzaA PMID:34811538 tetramer-sort yes amplicon-seq transitional T cells between effector and memory populations T1D T1D_6 chip0423_357597 PBMC +6053 CAAGETSYDKVIF TRAV13-1*01 TRAJ50*01 HLA-B*08:01 B2M MHCI RAKFKQLL BZLF1 EBV PMID:34811538 tetramer-sort yes amplicon-seq effector memory T cells T1D T1D_5 chip0423_616456 PBMC +6054 WAVWDATWDGKIIF TRAV3*01 TRAJ30*01 CASSLGGGEGASEQFF TRBV7-6*01 TRBJ2-1*01 HLA-B*08:01 B2M MHCI FLRGRAYGL EBNA3A EBV PMID:34811538 tetramer-sort yes amplicon-seq effector memory T cells T1D T1D_4 chip0423_222440 PBMC +6055 CAVLNTNAGKSTF TRAV12-2*01 TRAJ27*01 CASSVEGDSPLHF TRBV9*01 TRBJ1-6*01 HLA-A*02:01 B2M MHCI YVLDHLIVV BRLF1 EBV PMID:34811538 tetramer-sort yes amplicon-seq transitional T cells between effector and memory populations T1D T1D_4 chip0423_412618 PBMC +6056 CILPLAGGTSYGKLTF TRAV26-2*01 TRAJ52*01 CASSLGQAYEQYF TRBV7-8*01 TRBJ2-7*01 HLA-B*08:01 B2M MHCI FLRGRAYGL EBNA3A EBV PMID:34811538 tetramer-sort yes amplicon-seq effector memory T cells T1D T1D_6 chip0423_626161 PBMC +6057 CASSPPGRNEKLFF TRBV12-3*01,TRBV12-4*01 TRBJ1-4*01 HLA-B*08:01 B2M MHCI RAKFKQLL BZLF1 EBV PMID:34811538 tetramer-sort yes amplicon-seq effector memory T cells T1D T1D_5 chip0423_273559 PBMC +6058 CLLGDGP??gGSRAPPF TRAV4*01 TRAJ5*01 CASSPSGSGGNNEQFF TRBV12-3*01,TRBV12-4*01 TRBJ2-1*01 HLA-B*08:01 B2M MHCI RAKFKQLL BZLF1 EBV PMID:34811538 tetramer-sort yes amplicon-seq effector T cells T1D T1D_5 chip0423_354972 PBMC +6059 CAVPGDMRF TRAV12-2*01 TRAJ43*01 CASSFGTYGYTF TRBV28*01 TRBJ1-2*01 HLA-A*02:01 B2M MHCI ALAGIGILTV MART1 HomoSapiens PMID:34811538 tetramer-sort yes amplicon-seq Naive T cells T1D T1D_4 chip0423_884255 PBMC +6060 CAERK*EW??aGSQGLLIF TRAV5*01 TRAJ42*01 CASSLQGGSDGYTF TRBV6-1*01 TRBJ1-2*01 HLA-A*01:01 B2M MHCI HSNLNDATY NP InfluenzaA PMID:34811538 tetramer-sort yes amplicon-seq central memory T cells T1D T1D_4 chip0423_678574 PBMC +6061 CIVREGGGADGLTF TRAV26-1*01 TRAJ45*01 CASSLAVGEGPQHF TRBV7-9*01 TRBJ1-5*01 HLA-B*08:01 B2M MHCI RAKFKQLL BZLF1 EBV PMID:34811538 tetramer-sort yes amplicon-seq effector T cells T1D T1D_4 chip0423_342399 PBMC +6062 CAVTGGGADGLTF TRAV12-2*01 TRAJ45*01 CASSTPGGTGELFF TRBV28*01 TRBJ2-2*01 HLA-A*02:01 B2M MHCI LLAGIGTVPI PGT HomoSapiens PMID:34811538 tetramer-sort yes amplicon-seq Naive T cells T1D T1D_6 chip0423_686969 PBMC +6063 CSATDTLQYGYTF TRBV20-1*01 TRBJ1-2*01 HLA-A*02:01 B2M MHCI YVLDHLIVV BRLF1 EBV PMID:34811538 tetramer-sort yes amplicon-seq effector memory T cells T1D T1D_4 chip0423_56614 PBMC +6064 CASSQNTGELFF TRBV18*01 TRBJ2-2*01 HLA-B*08:01 B2M MHCI RPIIRPATL NP InfluenzaA PMID:34811538 tetramer-sort yes amplicon-seq Naive T cells T1D T1D_5 chip0423_226315 PBMC +6065 CVVTRFGNEKLTF TRAV10*01 TRAJ48*01 CASSLAANGVYEQYF TRBV5-1*01 TRBJ2-7*01 HLA-B*08:01 B2M MHCI YLKDQQLL gp160 HIV-1 PMID:34811538 tetramer-sort yes amplicon-seq Naive T cells T1D T1D_4 chip0423_561783 PBMC +6066 CIVREGGGADGLTF TRAV26-1*01 TRAJ45*01 CASSLAVGEGPQHF TRBV7-9*01 TRBJ1-5*01 HLA-B*08:01 B2M MHCI RAKFKQLL BZLF1 EBV PMID:34811538 tetramer-sort yes amplicon-seq effector memory T cells T1D T1D_4 chip0423_363515 PBMC +6067 CSAGRDGTNEKLFF TRBV29-1*01 TRBJ1-4*01 HLA-A*02:01 B2M MHCI GLCTLVAML BLMF1 EBV PMID:34811538 tetramer-sort yes amplicon-seq effector memory T cells T1D T1D_6 chip0423_780159 PBMC +6068 CASSLGQAYEQYF TRBV7-8*01 TRBJ2-7*01 HLA-B*08:01 B2M MHCI FLRGRAYGL EBNA3A EBV PMID:34811538 tetramer-sort yes amplicon-seq effector memory T cells T1D T1D_6 chip0423_450302 PBMC +6070 CASSLGQAYEQYF TRBV7-8*01 TRBJ2-7*01 HLA-B*08:01 B2M MHCI FLRGRAYGL EBNA3A EBV PMID:34811538 tetramer-sort yes amplicon-seq effector memory T cells T1D T1D_6 chip0423_740900 PBMC +6071 CASSLGQAYEQYF TRBV7-8*01 TRBJ2-7*01 HLA-B*08:01 B2M MHCI FLRGRAYGL EBNA3A EBV PMID:34811538 tetramer-sort yes amplicon-seq effector memory T cells T1D T1D_4 chip0423_193086 PBMC +6072 CASQLAGGTGELFF TRBV24-1*01 TRBJ2-2*01 HLA-B*08:01 B2M MHCI RAKFKQLL BZLF1 EBV PMID:34811538 tetramer-sort yes amplicon-seq effector memory T cells T1D T1D_5 chip0423_81457 PBMC +6073 CAVRNNNDMRF TRAV41*01 TRAJ43*01 CSALYTGTASYEQYF TRBV20-1*01 TRBJ2-7*01 HLA-A*02:01 B2M MHCI FLFAVGFYL IGRP HomoSapiens PMID:34811538 tetramer-sort yes amplicon-seq Naive T cells T1D T1D_6 chip0423_87326 PBMC +6074 CVVNLDTDKLIF TRAV12-1*01 TRAJ34*01 CSAGQGPYEQYF TRBV29-1*01 TRBJ2-7*01 HLA-B*08:01 B2M MHCI RAKFKQLL BZLF1 EBV PMID:34811538 tetramer-sort yes amplicon-seq effector T cells T1D T1D_4 chip0423_176061 PBMC +6075 CATEETSYDKVIF TRAV13-1*01 TRAJ50*01 CASSLLGETGNTIYF TRBV7-9*01 TRBJ1-3*01 HLA-B*08:01 B2M MHCI RAKFKQLL BZLF1 EBV PMID:34811538 tetramer-sort yes amplicon-seq effector memory T cells T1D T1D_5 chip0423_316168 PBMC +6076 CILPLAGGTSYGKLTF TRAV26-2*01 TRAJ52*01 CASSLGQAYEQYF TRBV7-8*01 TRBJ2-7*01 HLA-B*08:01 B2M MHCI FLRGRAYGL EBNA3A EBV PMID:34811538 tetramer-sort yes amplicon-seq effector memory T cells T1D T1D_4 chip0423_653135 PBMC +6077 CSVGTGGTNEKLFF TRBV29-1*01 TRBJ1-4*01 HLA-A*02:01 B2M MHCI GLCTLVAML BLMF1 EBV PMID:34811538 tetramer-sort yes amplicon-seq effector memory T cells T1D T1D_4 chip0423_289105 PBMC +6078 CAAPETSYDKVIF TRAV13-1*01 TRAJ50*01 CASSPPGANVLTF TRBV12-3*01,TRBV12-4*01 TRBJ2-6*01 HLA-B*08:01 B2M MHCI RAKFKQLL BZLF1 EBV PMID:34811538 tetramer-sort yes amplicon-seq effector T cells T1D T1D_5 chip0423_184165 PBMC +6079 YASSVSGAPYEQYF TRBV9*01 TRBJ2-7*01 HLA-B*08:01 B2M MHCI FLRGRAYGL EBNA3A EBV PMID:34811538 tetramer-sort yes amplicon-seq effector memory T cells T1D T1D_6 chip0423_728243 PBMC +6080 CAASETSYDKVIF TRAV13-1*01 TRAJ50*01 CASSSTGGGDQPQHF TRBV7-9*01 TRBJ1-5*01 HLA-B*08:01 B2M MHCI RAKFKQLL BZLF1 EBV PMID:34811538 tetramer-sort yes amplicon-seq effector memory T cells T1D T1D_4 chip0423_799183 PBMC +6081 CASSPGFSSNQPQHF TRBV19*01 TRBJ1-5*01 HLA-B*08:01 B2M MHCI YAKWKLCSA ZNT8 HomoSapiens PMID:34811538 tetramer-sort yes amplicon-seq Naive T cells T1D T1D_6 chip0423_297988 PBMC +6082 CAVRDIGGGYNKLIF TRAV3*01 TRAJ4*01 CASSLNRGNNEQFF TRBV13*01 TRBJ2-1*01 HLA-A*02:01 B2M MHCI NLAQDLATV GFAP HomoSapiens PMID:34811538 tetramer-sort yes amplicon-seq central memory T cells T1D T1D_4 chip0423_403803 PBMC +6083 CASSLGQAYEQYF TRBV7-8*01 TRBJ2-7*01 HLA-B*08:01 B2M MHCI FLRGRAYGL EBNA3A EBV PMID:34811538 tetramer-sort yes amplicon-seq effector memory T cells T1D T1D_6 chip0423_771630 PBMC +6084 CSASRDSYEQYF TRBV20-1*01 TRBJ2-7*01 HLA-A*02:01 B2M MHCI YLLEMLWRL LMP1 EBV PMID:34811538 tetramer-sort yes amplicon-seq central memory T cells T1D T1D_4 chip0423_40519 PBMC +6085 CAVNRFLADRGSTLGRLYF TRAV12-2*01 TRAJ18*01 CASSQEVTDTQYF TRBV4-3*01 TRBJ2-3*01 HLA-A*02:01 B2M MHCI YLLEMLWRL LMP1 EBV PMID:34811538 tetramer-sort yes amplicon-seq central memory T cells T1D T1D_4 chip0423_119653 PBMC +6086 CAMREGEGQGFSFIF TRAV14/DV4*01 TRAJ11*01 RASRTGFSYEQYF TRBV5-1*01 TRBJ2-7*01 HLA-B*08:01 B2M MHCI RAKFKQLL BZLF1 EBV PMID:34811538 tetramer-sort yes amplicon-seq effector memory T cells T1D T1D_5 chip0423_627324 PBMC +6087 CVVIDYGQNFVF TRAV8-2*01 TRAJ26*01 CASSAWGGADPTDTQYF TRBV9*01 TRBJ2-3*01 HLA-B*08:01 B2M MHCI LRLRLDQL GFAP HomoSapiens PMID:34811538 tetramer-sort yes amplicon-seq transitional T cells between effector and memory populations T1D T1D_6 chip0423_438040 PBMC +6088 CAMSLSNFGNEKLTF TRAV12-3*01 TRAJ48*01 CASSYAGTPGLNEQFF TRBV6-5*01 TRBJ2-1*01 HLA-A*02:01 B2M MHCI LLAGIGTVPI PGT HomoSapiens PMID:34811538 tetramer-sort yes amplicon-seq Naive T cells T1D T1D_6 chip0423_554797 PBMC +6089 CILPLAGGTSYGKLTF TRAV26-2*01 TRAJ52*01 CASSLGQAYEQYF TRBV7-8*01 TRBJ2-7*01 HLA-B*08:01 B2M MHCI FLRGRAYGL EBNA3A EBV PMID:34811538 tetramer-sort yes amplicon-seq effector memory T cells T1D T1D_6 chip0423_541706 PBMC +6090 CVVHRNPGGQLIF TRAV8-2*01 TRAJ23*01 CASSFRPPTSNSPLHF TRBV28*01 TRBJ1-6*01 HLA-B*08:01 B2M MHCI MMIARFKM GAD2 HomoSapiens PMID:34811538 tetramer-sort yes amplicon-seq transitional T cells between effector and memory populations T1D T1D_4 chip0423_41680 PBMC +6091 CAMSYSNFGNEKLTF TRAV12-3*01 TRAJ48*01 CASSSGQGAVEIDNEQFF TRBV19*01 TRBJ2-1*01 HLA-A*02:01 B2M MHCI LLAGIGTVPI PGT HomoSapiens PMID:34811538 tetramer-sort yes amplicon-seq Naive T cells T1D T1D_6 chip0423_572389 PBMC +6092 CAATETSYDKVIF TRAV13-1*01 TRAJ50*01 CASSSLTNTEAFF TRBV7-9*01 TRBJ1-1*01 HLA-B*08:01 B2M MHCI RAKFKQLL BZLF1 EBV PMID:34811538 tetramer-sort yes amplicon-seq effector T cells T1D T1D_5 chip0423_563309 PBMC +6093 WGADSLGGTYKYIF TRAV34*01 TRAJ40*01 CSVGSGEGYEQYF TRBV29-1*01 TRBJ2-7*01 HLA-B*08:01 B2M MHCI RAKFKQLL BZLF1 EBV PMID:34811538 tetramer-sort yes amplicon-seq effector T cells T1D T1D_4 chip0423_351122 PBMC +6094 CASGPDISYSYEQYF TRBV12-5*01 TRBJ2-7*01 HLA-B*08:01 B2M MHCI RAKFKQLL BZLF1 EBV PMID:34811538 tetramer-sort yes amplicon-seq effector T cells T1D T1D_5 chip0423_228942 PBMC +6095 CASSISNFGNEKLTF TRAV12-3*01 TRAJ48*01 CASSLGEMQFF TRBV7-6*01 TRBJ2-1*01 HLA-A*02:01 B2M MHCI LLAGIGTVPI PGT HomoSapiens PMID:34811538 tetramer-sort yes amplicon-seq Naive T cells T1D T1D_4 chip0423_752 PBMC +6096 CAASETSYDKVIF TRAV13-1*01 TRAJ50*01 CASSLLGQAYNSPLHF TRBV7-9*01 TRBJ1-6*01 HLA-B*08:01 B2M MHCI RAKFKQLL BZLF1 EBV PMID:34811538 tetramer-sort yes amplicon-seq effector memory T cells T1D T1D_5 chip0423_420917 PBMC +6097 CGTERDSGNTPLVF TRAV30*01 TRAJ29*01 CASSWGPEAFF TRBV7-9*01 TRBJ1-1*01 HLA-B*08:01 B2M MHCI FLRGRAYGL EBNA3A EBV PMID:34811538 tetramer-sort yes amplicon-seq effector memory T cells T1D T1D_4 chip0423_613991 PBMC +6098 CASSGRSTDTQYF TRBV19*01 TRBJ2-3*01 HLA-A*02:01 B2M MHCI GILGFVFTL M1 InfluenzaA PMID:34811538 tetramer-sort yes amplicon-seq transitional T cells between effector and memory populations T1D T1D_4 chip0423_589757 PBMC +6099 CASQLAGGTGALFF TRBV24-1*01 TRBJ2-2*01 HLA-B*08:01 B2M MHCI RAKFKQLL BZLF1 EBV PMID:34811538 tetramer-sort yes amplicon-seq effector memory T cells T1D T1D_5 chip0423_110913 PBMC +6100 CSAGRDGTNEKLFL TRBV29-1*01 TRBJ1-4*01 HLA-A*02:01 B2M MHCI GLCTLVAML BLMF1 EBV PMID:34811538 tetramer-sort yes amplicon-seq effector memory T cells T1D T1D_6 chip0423_151031 PBMC +6101 SILPLAGGTCFGMLTF TRAV26-2*01 TRAJ52*01 CASSLGQAYEQYF TRBV7-8*01 TRBJ2-7*01 HLA-B*08:01 B2M MHCI FLRGRAYGL EBNA3A EBV PMID:34811538 tetramer-sort yes amplicon-seq effector memory T cells T1D T1D_6 chip0423_126438 PBMC +6102 CASSVERLSGANVLTF TRBV9*01 TRBJ2-6*01 HLA-B*08:01 B2M MHCI RPIIRPATL NP InfluenzaA PMID:34811538 tetramer-sort yes amplicon-seq Naive T cells T1D T1D_5 chip0423_829089 PBMC +6103 CALVNYGGSQGNLIF TRAV19*01 TRAJ42*01 CAVWRDGAYEQYF TRBV28*01 TRBJ2-7*01 HLA-A*02:01 B2M MHCI YLLEMLWRL LMP1 EBV PMID:34811538 tetramer-sort yes amplicon-seq effector memory T cells T1D T1D_4 chip0423_768125 PBMC +6104 CASSPPGANVLTF TRBV12-3*01,TRBV12-4*01 TRBJ2-6*01 HLA-B*08:01 B2M MHCI RAKFKQLL BZLF1 EBV PMID:34811538 tetramer-sort yes amplicon-seq effector memory T cells T1D T1D_5 chip0423_852999 PBMC +6105 CIVREGGGADGLTF TRAV26-1*01 TRAJ45*01 CASSLAVGEGPQHF TRBV7-9*01 TRBJ1-5*01 HLA-B*08:01 B2M MHCI RAKFKQLL BZLF1 EBV PMID:34811538 tetramer-sort yes amplicon-seq effector T cells T1D T1D_4 chip0423_40965 PBMC +6106 CILPLAGGTSYGKLTF TRAV26-2*01 TRAJ52*01 CASSLGQAYEQYF TRBV7-8*01 TRBJ2-7*01 HLA-B*08:01 B2M MHCI FLRGRAYGL EBNA3A EBV PMID:34811538 tetramer-sort yes amplicon-seq effector memory T cells T1D T1D_4 chip0423_481944 PBMC +6107 CAEMETSYDKVIF TRAV13-2*01 TRAJ50*01 CASSSLSGGAGNEQFF TRBV7-9*01 TRBJ2-1*01 HLA-B*08:01 B2M MHCI RAKFKQLL BZLF1 EBV PMID:34811538 tetramer-sort yes amplicon-seq effector T cells T1D T1D_5 chip0423_54834 PBMC +6108 CASSLAVGEGPQHF TRBV7-9*01 TRBJ1-5*01 HLA-B*08:01 B2M MHCI RAKFKQLL BZLF1 EBV PMID:34811538 tetramer-sort yes amplicon-seq effector memory T cells T1D T1D_4 chip0423_220814 PBMC +6110 CSVGSGEGYEQYF TRBV29-1*01 TRBJ2-7*01 HLA-B*08:01 B2M MHCI RAKFKQLL BZLF1 EBV PMID:34811538 tetramer-sort yes amplicon-seq effector memory T cells T1D T1D_4 chip0423_201206 PBMC +6111 CAARETSYDKVIF TRAV13-1*01 TRAJ50*01 HLA-B*08:01 B2M MHCI RAKFKQLL BZLF1 EBV PMID:34811538 tetramer-sort yes amplicon-seq effector T cells T1D T1D_5 chip0423_783284 PBMC +6112 CASSLELGLPYEQYF TRBV5-1*01 TRBJ2-7*01 HLA-B*08:01 B2M MHCI QAKWRLQTL EBNA3A EBV PMID:34811538 tetramer-sort yes amplicon-seq effector memory T cells T1D T1D_4 chip0423_670872 PBMC +6113 CILPLAGGTSYGKLTF TRAV26-2*01 TRAJ52*01 CASSLGQAYEQYF TRBV7-8*01 TRBJ2-7*01 HLA-B*08:01 B2M MHCI FLRGRAYGL EBNA3A EBV PMID:34811538 tetramer-sort yes amplicon-seq effector memory T cells T1D T1D_4 chip0423_611906 PBMC +6114 CAVGTMAct?SNTGKLIF TRAV2*01 TRAJ37*01 CASSLAGREGTQYF TRBV11-3*01 TRBJ2-3*01 HLA-B*08:01 B2M MHCI ELRSRYWAI NP InfluenzaA PMID:34811538 tetramer-sort yes amplicon-seq transitional T cells between effector and memory populations T1D T1D_6 chip0423_14295 PBMC +6115 CASSVSGAPYEQYF TRBV9*01 TRBJ2-7*01 HLA-B*08:01 B2M MHCI FLRGRAYGL EBNA3A EBV PMID:34811538 tetramer-sort yes amplicon-seq effector memory T cells T1D T1D_6 chip0423_270200 PBMC +6116 CAGPPFGPETLTF TRAV21*01 TRAJ48*01 CASSRSSYNSPLHF TRBV12-3*01,TRBV12-4*01 TRBJ1-6*01 HLA-A*01:01 B2M MHCI LVSDGGPNLY PB1 InfluenzaA PMID:34811538 tetramer-sort yes amplicon-seq Naive T cells T1D T1D_4 chip0423_784980 PBMC +6117 CALVNYGGSQGNLIF TRAV19*01 TRAJ42*01 CAVWRDGAYEQYF TRBV28*01 TRBJ2-7*01 HLA-A*02:01 B2M MHCI YLLEMLWRL LMP1 EBV PMID:34811538 tetramer-sort yes amplicon-seq effector memory T cells T1D T1D_4 chip0423_619679 PBMC +6118 CILPLAGGTSYGKLTF TRAV26-2*01 TRAJ52*01 CASSLGQAYEQYF TRBV7-8*01 TRBJ2-7*01 HLA-B*08:01 B2M MHCI FLRGRAYGL EBNA3A EBV PMID:34811538 tetramer-sort yes amplicon-seq central memory T cells T1D T1D_6 chip0423_151664 PBMC +6119 CASQGGSQGNLIF TRAV20*01 TRAJ42*01 HLA-A*02:01 B2M MHCI TLLANVTAV VP6 RotavirusA PMID:34811538 tetramer-sort yes amplicon-seq transitional T cells between effector and memory populations T1D T1D_6 chip0423_228348 PBMC +6120 CASQGGSQGNLIF TRAV20*01 TRAJ42*01 CASSLGGQTETQYF TRBV13*01 TRBJ2-5*01 HLA-A*02:01 B2M MHCI TLLANVTAV VP6 RotavirusA PMID:34811538 tetramer-sort yes amplicon-seq transitional T cells between effector and memory populations T1D T1D_6 chip0423_639038 PBMC +6121 CAMTISNFGNEKLTF TRAV12-3*01 TRAJ48*01 CASSQDIGGPDTGELFF TRBV3-1*01 TRBJ2-2*01 HLA-A*02:01 B2M MHCI LLAGIGTVPI PGT HomoSapiens PMID:34811538 tetramer-sort yes amplicon-seq Naive T cells T1D T1D_6 chip0423_443059 PBMC +6122 CASSQVNNPGDGYTF TRBV14*01 TRBJ1-2*01 HLA-B*08:01 B2M MHCI QAKWRLQTL EBNA3A EBV PMID:34811538 tetramer-sort yes amplicon-seq effector memory T cells T1D T1D_4 chip0423_220647 PBMC +6123 CALPGSNYQLIW TRAV19*01 TRAJ33*01 CASRLWDTSTQYV TRBV7-6*01 TRBJ2-3*01 HLA-A*01:01 B2M MHCI VSATAGTTVY GAD2 HomoSapiens PMID:34811538 tetramer-sort yes amplicon-seq Naive T cells T1D T1D_5 chip0423_125345 PBMC +6124 CIVRVVCgc?GTARLLTF TRAV26-1*01 TRAJ44*01 CASSLAVGEGPQHF TRBV7-9*01 TRBJ1-5*01 HLA-B*08:01 B2M MHCI RAKFKQLL BZLF1 EBV PMID:34811538 tetramer-sort yes amplicon-seq effector T cells T1D T1D_4 chip0423_121726 PBMC +6125 CASSRDTAPEQYF TRBV18*01 TRBJ2-7*01 HLA-A*01:01 B2M MHCI CTELKLSDY NP InfluenzaA PMID:34811538 tetramer-sort yes amplicon-seq transitional T cells between effector and memory populations T1D T1D_5 chip0423_856731 PBMC +6126 CAG*GQ??tNNDMRF TRAV23/DV6*01 TRAJ43*01 HLA-B*08:01 B2M MHCI FLRGRAYGL EBNA3A EBV PMID:34811538 tetramer-sort yes amplicon-seq effector T cells T1D T1D_6 chip0423_727581 PBMC +6127 YIDREGGGSDGLTF TRAV26-1*01 TRAJ45*01 CASSLAVGEGPQHF TRBV7-9*01 TRBJ1-5*01 HLA-B*08:01 B2M MHCI RAKFKQLL BZLF1 EBV PMID:34811538 tetramer-sort yes amplicon-seq effector memory T cells T1D T1D_4 chip0423_868983 PBMC +6128 CAVRILPNFGNEKLTF TRAV21*01 TRAJ48*01 HLA-B*08:01 B2M MHCI QAKWRLQTL EBNA3A EBV PMID:34811538 tetramer-sort yes amplicon-seq effector memory T cells T1D T1D_6 chip0423_348068 PBMC +6129 CAAAETSYDKVIF TRAV13-1*01 TRAJ50*01 YASQLAGGTGELFF TRBV24-1*01 TRBJ2-2*01 HLA-B*08:01 B2M MHCI RAKFKQLL BZLF1 EBV PMID:34811538 tetramer-sort yes amplicon-seq effector T cells T1D T1D_5 chip0423_334545 PBMC +6130 CAASETSYDKVIF TRAV13-1*01 TRAJ50*01 CASSSLGQKNTEAFF TRBV7-9*01 TRBJ1-1*01 HLA-B*08:01 B2M MHCI RAKFKQLL BZLF1 EBV PMID:34811538 tetramer-sort yes amplicon-seq effector T cells T1D T1D_5 chip0423_730399 PBMC +6131 CAASKIEga?GGADGLTF TRAV23/DV6*01 TRAJ45*01 RASSLGQAYEQYF TRBV7-8*01 TRBJ2-7*01 HLA-B*08:01 B2M MHCI FLRGRAYGL EBNA3A EBV PMID:34811538 tetramer-sort yes amplicon-seq effector memory T cells T1D T1D_6 chip0423_185061 PBMC +6132 CASSLGQAYEQYF TRBV7-8*01 TRBJ2-7*01 HLA-B*08:01 B2M MHCI FLRGRAYGL EBNA3A EBV PMID:34811538 tetramer-sort yes amplicon-seq effector memory T cells T1D T1D_4 chip0423_4757 PBMC +6133 CASSSRTGTKNTEAFF TRBV7-2*01 TRBJ1-1*01 HLA-A*01:01 B2M MHCI HSNLNDATY NP InfluenzaA PMID:34811538 tetramer-sort yes amplicon-seq effector memory T cells T1D T1D_6 chip0423_494534 PBMC +6134 CASSLAVGEGPQHF TRBV7-9*01 TRBJ1-5*01 HLA-B*08:01 B2M MHCI RAKFKQLL BZLF1 EBV PMID:34811538 tetramer-sort yes amplicon-seq effector memory T cells T1D T1D_4 chip0423_774576 PBMC +6135 CSAGRDGTNEKLFF TRBV29-1*01 TRBJ1-4*01 HLA-A*02:01 B2M MHCI GLCTLVAML BLMF1 EBV PMID:34811538 tetramer-sort yes amplicon-seq effector memory T cells T1D T1D_6 chip0423_315622 PBMC +6136 CASSLTVLAGPNTEAFF TRBV7-3*01 TRBJ1-1*01 HLA-B*08:01 B2M MHCI RAKFKQLL BZLF1 EBV PMID:34811538 tetramer-sort yes amplicon-seq effector memory T cells T1D T1D_4 chip0423_176156 PBMC +6138 CASSQVNNPGDGYTF TRBV14*01 TRBJ1-2*01 HLA-B*08:01 B2M MHCI QAKWRLQTL EBNA3A EBV PMID:34811538 tetramer-sort yes amplicon-seq effector memory T cells T1D T1D_4 chip0423_844886 PBMC +6139 CASRLEGRASSYEQYF TRBV5-1*01 TRBJ2-7*01 HLA-A*02:01 B2M MHCI CLGGLLTMV LMP2A EBV PMID:34811538 tetramer-sort yes amplicon-seq effector memory T cells T1D T1D_4 chip0423_315143 PBMC +6140 CDSSLKVGEGPQHF TRBV7-9*01 TRBJ1-5*01 HLA-B*08:01 B2M MHCI RAKFKQLL BZLF1 EBV PMID:34811538 tetramer-sort yes amplicon-seq effector memory T cells T1D T1D_4 chip0423_107302 PBMC +6141 CILPLAGGTSYGKLTF TRAV26-2*01 TRAJ52*01 CASSLGQAYEQYF TRBV7-8*01 TRBJ2-7*01 HLA-B*08:01 B2M MHCI FLRGRAYGL EBNA3A EBV PMID:34811538 tetramer-sort yes amplicon-seq effector memory T cells T1D T1D_6 chip0423_303362 PBMC +6142 CSARDLAGALVHNEQFF TRBV20-1*01 TRBJ2-1*01 HLA-B*08:01 B2M MHCI YAYAKWKL ZNT8 HomoSapiens PMID:34811538 tetramer-sort yes amplicon-seq Naive T cells T1D T1D_5 chip0423_38485 PBMC +6144 CAARETSYDKVIF TRAV13-1*01 TRAJ50*01 CASSASDRGEAFF TRBV12-3*01,TRBV12-4*01 TRBJ1-1*01 HLA-B*08:01 B2M MHCI RAKFKQLL BZLF1 EBV PMID:34811538 tetramer-sort yes amplicon-seq effector memory T cells T1D T1D_5 chip0423_483277 PBMC +6145 CASSGPGRSVGTEAFF TRBV7-9*01 TRBJ1-1*01 HLA-B*08:01 B2M MHCI WPTVRERM Nef HIV-1 PMID:34811538 tetramer-sort yes amplicon-seq Naive T cells T1D T1D_5 chip0423_87610 PBMC +6147 CVVSDRNFNKFYF TRAV8-2*01 TRAJ21*01 CAISESLGRDEQYF TRBV10-3*01 TRBJ2-7*01 HLA-A*01:01 B2M MHCI CTELKLSDY NP InfluenzaA PMID:34811538 tetramer-sort yes amplicon-seq transitional T cells between effector and memory populations T1D T1D_6 chip0423_723920 PBMC +6148 CVVFLGNQFYF TRAV12-1*01 TRAJ49*01 CSARRYTEAFF TRBV20-1*01 TRBJ1-1*01 HLA-B*08:01 B2M MHCI ILKLQVFL IAPP HomoSapiens PMID:34811538 tetramer-sort yes amplicon-seq Naive T cells T1D T1D_6 chip0423_76756 PBMC +6149 CIVRVVCac?GTASQLTF TRAV26-1*01 TRAJ44*01 CASSLAVGEGPQHF TRBV7-9*01 TRBJ1-5*01 HLA-B*08:01 B2M MHCI RAKFKQLL BZLF1 EBV PMID:34811538 tetramer-sort yes amplicon-seq effector T cells T1D T1D_4 chip0423_368461 PBMC +6150 CAVSWGF TRAV12-2*01 TRAJ37*01 CASSLSPGDTGELFF TRBV12-3*01,TRBV12-4*01 TRBJ2-2*01 HLA-A*02:01 B2M MHCI LLAGIGTVPI PGT HomoSapiens PMID:34811538 tetramer-sort yes amplicon-seq Naive T cells T1D T1D_6 chip0423_216207 PBMC +6151 CILRGERMDSNYQLIW TRAV26-2*01 TRAJ33*01 CASSVFGGWDTEAFF TRBV19*01 TRBJ1-1*01 HLA-A*02:01 B2M MHCI GILGFVFTL M1 InfluenzaA PMID:34811538 tetramer-sort yes amplicon-seq transitional T cells between effector and memory populations T1D T1D_4 chip0423_868973 PBMC +6152 CAASKIEga?GGADGLTF TRAV23/DV6*01 TRAJ45*01 CASSLGQAYEQYF TRBV7-8*01 TRBJ2-7*01 HLA-B*08:01 B2M MHCI FLRGRAYGL EBNA3A EBV PMID:34811538 tetramer-sort yes amplicon-seq effector memory T cells T1D T1D_6 chip0423_878398 PBMC +6153 CAAAETSYDKVIF TRAV13-1*01 TRAJ50*01 CASQLAGGTGELFF TRBV24-1*01 TRBJ2-2*01 HLA-B*08:01 B2M MHCI RAKFKQLL BZLF1 EBV PMID:34811538 tetramer-sort yes amplicon-seq effector T cells T1D T1D_5 chip0423_198294 PBMC +6154 CAGTNTDKLIF TRAV27*01 TRAJ34*01 CASSSTGGGDQPQHF TRBV7-9*01 TRBJ1-5*01 HLA-B*08:01 B2M MHCI RAKFKQLL BZLF1 EBV PMID:34811538 tetramer-sort yes amplicon-seq effector memory T cells T1D T1D_4 chip0423_42631 PBMC +6155 CAIGSRGGRYGYTF TRBV6-5*01 TRBJ1-2*01 HLA-A*02:01 B2M MHCI FLYALALLL LMP2 EBV PMID:34811538 tetramer-sort yes amplicon-seq effector memory T cells T1D T1D_6 chip0423_795153 PBMC +6156 CAASEDARLMF TRAV13-1*01 TRAJ31*01 CASSFPFQSYGYTF TRBV7-9*01 TRBJ1-2*01 HLA-B*08:01 B2M MHCI RAKFKQLL BZLF1 EBV PMID:34811538 tetramer-sort yes amplicon-seq effector memory T cells T1D T1D_4 chip0423_522013 PBMC +6157 CAATETSYDKVIF TRAV13-1*01 TRAJ50*01 CASSPPGRNEKLFF TRBV12-3*01,TRBV12-4*01 TRBJ1-4*01 HLA-B*08:01 B2M MHCI RAKFKQLL BZLF1 EBV PMID:34811538 tetramer-sort yes amplicon-seq effector T cells T1D T1D_5 chip0423_247335 PBMC +6158 CASSLAVGEGPQHF TRBV7-9*01 TRBJ1-5*01 HLA-B*08:01 B2M MHCI RAKFKQLL BZLF1 EBV PMID:34811538 tetramer-sort yes amplicon-seq effector T cells T1D T1D_4 chip0423_129376 PBMC +6159 CIVREGGGADGLTF TRAV26-1*01 TRAJ45*01 CASSLAVGEGPQHF TRBV7-9*01 TRBJ1-5*01 HLA-B*08:01 B2M MHCI RAKFKQLL BZLF1 EBV PMID:34811538 tetramer-sort yes amplicon-seq effector T cells T1D T1D_4 chip0423_747526 PBMC +6160 CASSLGQAYEQYF TRBV7-8*01 TRBJ2-7*01 HLA-B*08:01 B2M MHCI FLRGRAYGL EBNA3A EBV PMID:34811538 tetramer-sort yes amplicon-seq transitional T cells between effector and memory populations T1D T1D_6 chip0423_731105 PBMC +6161 CAASETSYDKVIF TRAV13-1*01 TRAJ50*01 CASLQGGKEKLFF TRBV12-3*01,TRBV12-4*01 TRBJ1-4*01 HLA-B*08:01 B2M MHCI RAKFKQLL BZLF1 EBV PMID:34811538 tetramer-sort yes amplicon-seq effector memory T cells T1D T1D_5 chip0423_649087 PBMC +6162 CIVREGGGADGLTF TRAV26-1*01 TRAJ45*01 CASSLAVGEGPQHF TRBV7-9*01 TRBJ1-5*01 HLA-B*08:01 B2M MHCI RAKFKQLL BZLF1 EBV PMID:34811538 tetramer-sort yes amplicon-seq effector memory T cells T1D T1D_4 chip0423_106500 PBMC +6163 CAAAETSYDKVIF TRAV13-1*01 TRAJ50*01 CASQLAGGTGELFF TRBV24-1*01 TRBJ2-2*01 HLA-B*08:01 B2M MHCI RAKFKQLL BZLF1 EBV PMID:34811538 tetramer-sort yes amplicon-seq effector memory T cells T1D T1D_5 chip0423_582303 PBMC +6164 CAMGAGAGGGFKTIF TRAV14/DV4*01 TRAJ9*01 CASCVFGGAPYGYTF TRBV2*01 TRBJ1-2*01 HLA-B*08:01 B2M MHCI RAKFKQLL BZLF1 EBV PMID:34811538 tetramer-sort yes amplicon-seq transitional T cells between effector and memory populations T1D T1D_5 chip0423_648731 PBMC +6165 CASGSARQLTF TRAV12-1*01 TRAJ22*01 HLA-A*02:01 B2M MHCI LLAGIGTVPI PGT HomoSapiens PMID:34811538 tetramer-sort yes amplicon-seq transitional T cells between effector and memory populations T1D T1D_4 chip0423_76634 PBMC +6166 CASSDIREGQGEAFF TRBV10-2*01 TRBJ1-1*01 HLA-B*08:01 B2M MHCI QAKWRLQTL EBNA3A EBV PMID:34811538 tetramer-sort yes amplicon-seq central memory T cells T1D T1D_6 chip0423_339921 PBMC +6167 CALVNYGGSQGNLIF TRAV19*01 TRAJ42*01 CAVWRDGAYEQYF TRBV28*01 TRBJ2-7*01 HLA-A*02:01 B2M MHCI YLLEMLWRL LMP1 EBV PMID:34811538 tetramer-sort yes amplicon-seq effector memory T cells T1D T1D_4 chip0423_184464 PBMC +6168 CASSLAVGEGPQHF TRBV7-9*01 TRBJ1-5*01 HLA-B*08:01 B2M MHCI RAKFKQLL BZLF1 EBV PMID:34811538 tetramer-sort yes amplicon-seq effector T cells T1D T1D_4 chip0423_804088 PBMC +6169 CASTHPQDVNTGELFF TRBV7-9*01 TRBJ2-2*01 HLA-B*08:01 B2M MHCI RAKFKQLL BZLF1 EBV PMID:34811538 tetramer-sort yes amplicon-seq effector memory T cells T1D T1D_5 chip0423_679113 PBMC +6170 CIVREGGGADGLTF TRAV26-1*01 TRAJ45*01 CASSLAVGEGPQHF TRBV7-9*01 TRBJ1-5*01 HLA-B*08:01 B2M MHCI RAKFKQLL BZLF1 EBV PMID:34811538 tetramer-sort yes amplicon-seq effector memory T cells T1D T1D_4 chip0423_343963 PBMC +6171 CILPLAGGTSYGKLTF TRAV26-2*01 TRAJ52*01 CASSQGQAYEQYF TRBV7-8*01 TRBJ2-7*01 HLA-B*08:01 B2M MHCI FLRGRAYGL EBNA3A EBV PMID:34811538 tetramer-sort yes amplicon-seq effector memory T cells T1D T1D_4 chip0423_5069 PBMC +6172 CAGILGYTGNQSYF TRAV13-1*01 TRAJ49*01 CASSPRGDRENSPLHF TRBV7-9*01 TRBJ1-6*01 HLA-A*01:01 B2M MHCI HSNLNDATY NP InfluenzaA PMID:34811538 tetramer-sort yes amplicon-seq effector T cells T1D T1D_5 chip0423_441676 PBMC +6173 CASQLAGGTGELFF TRBV24-1*01 TRBJ2-2*01 HLA-B*08:01 B2M MHCI RAKFKQLL BZLF1 EBV PMID:34811538 tetramer-sort yes amplicon-seq effector T cells T1D T1D_5 chip0423_285127 PBMC +6174 CAVSDGEGAQKLVF TRAV8-6*01 TRAJ54*01 CASSLTVLAGPNTEAFF TRBV7-3*01 TRBJ1-1*01 HLA-B*08:01 B2M MHCI RAKFKQLL BZLF1 EBV PMID:34811538 tetramer-sort yes amplicon-seq effector memory T cells T1D T1D_4 chip0423_242063 PBMC +6175 CASSPPGRNEKLFF TRAV9-2*01 TRAJ5*01 CASSPPGRNEKLFF TRBV12-3*01,TRBV12-4*01 TRBJ1-4*01 HLA-B*08:01 B2M MHCI RAKFKQLL BZLF1 EBV PMID:34811538 tetramer-sort yes amplicon-seq effector T cells T1D T1D_5 chip0423_93697 PBMC +6176 CAVSDGEGAQKLVF TRAV8-6*01 TRAJ54*01 CASSLTVLAGPNTEAFF TRBV7-3*01 TRBJ1-1*01 HLA-B*08:01 B2M MHCI RAKFKQLL BZLF1 EBV PMID:34811538 tetramer-sort yes amplicon-seq effector memory T cells T1D T1D_4 chip0423_805781 PBMC +6177 CAEMETSYAKVIF TRAV13-2*01 TRAJ50*01 CASTHPQDVNTGELFF TRBV7-9*01 TRBJ2-2*01 HLA-B*08:01 B2M MHCI RAKFKQLL BZLF1 EBV PMID:34811538 tetramer-sort yes amplicon-seq effector T cells T1D T1D_5 chip0423_198071 PBMC +6178 CASSLLGPVDNSPLHF TRAV20*01 TRAJ11*01 CASSLLGTVDNSPLHF TRBV7-9*01 TRBJ1-6*01 HLA-B*08:01 B2M MHCI RAKFKQLL BZLF1 EBV PMID:34811538 tetramer-sort yes amplicon-seq effector memory T cells T1D T1D_5 chip0423_32009 PBMC +6179 CIVREGGGADGLTF TRAV26-1*01 TRAJ45*01 CASSLAVGEGPQHF TRBV7-9*01 TRBJ1-5*01 HLA-B*08:01 B2M MHCI RAKFKQLL BZLF1 EBV PMID:34811538 tetramer-sort yes amplicon-seq effector memory T cells T1D T1D_4 chip0423_731999 PBMC +6180 CILPLAGGTSYGKLTF TRAV26-2*01 TRAJ52*01 CASSLGQAYEQYF TRBV7-8*01 TRBJ2-7*01 HLA-B*08:01 B2M MHCI FLRGRAYGL EBNA3A EBV PMID:34811538 tetramer-sort yes amplicon-seq effector memory T cells T1D T1D_6 chip0423_719003 PBMC +6181 CASSLGQAYEQYF TRBV7-8*01 TRBJ2-7*01 HLA-B*08:01 B2M MHCI FLRGRAYGL EBNA3A EBV PMID:34811538 tetramer-sort yes amplicon-seq effector memory T cells T1D T1D_6 chip0423_550812 PBMC +6182 CILPLAGGTSYGKLTF TRAV26-2*01 TRAJ52*01 CASSLGQAYEQYF TRBV7-8*01 TRBJ2-7*01 HLA-B*08:01 B2M MHCI FLRGRAYGL EBNA3A EBV PMID:34811538 tetramer-sort yes amplicon-seq effector memory T cells T1D T1D_6 chip0423_752850 PBMC +6183 CAASETSYDKVIF TRAV13-1*01 TRAJ50*01 CASSLLGSRDTEAFF TRBV7-9*01 TRBJ1-1*01 HLA-B*08:01 B2M MHCI RAKFKQLL BZLF1 EBV PMID:34811538 tetramer-sort yes amplicon-seq effector T cells T1D T1D_5 chip0423_704440 PBMC +6184 CAVREYGNKLVF TRAV1-2*01 TRAJ47*01 HLA-B*08:01 B2M MHCI ELRSRYWAI NP InfluenzaA PMID:34811538 tetramer-sort yes amplicon-seq transitional T cells between effector and memory populations T1D T1D_6 chip0423_609792 PBMC +6185 CASSPKAGGLSDTQYF TRBV3-1*01 TRBJ2-3*01 HLA-B*08:01 B2M MHCI YAKWKLCSA ZNT8 HomoSapiens PMID:34811538 tetramer-sort yes amplicon-seq Naive T cells T1D T1D_5 chip0423_609232 PBMC +6186 CASSLSSGGRGEQYF TRBV4-1*01 TRBJ2-7*01 HLA-B*08:01 B2M MHCI RAKFKQLL BZLF1 EBV PMID:34811538 tetramer-sort yes amplicon-seq effector T cells T1D T1D_5 chip0423_14768 PBMC +6187 CILPLAGGTSYGKLTF TRAV26-2*01 TRAJ52*01 CASSLGQAYEQYF TRBV7-8*01 TRBJ2-7*01 HLA-B*08:01 B2M MHCI FLRGRAYGL EBNA3A EBV PMID:34811538 tetramer-sort yes amplicon-seq central memory T cells T1D T1D_6 chip0423_48576 PBMC +6188 CAASETSYDKVIF TRAV13-1*01 TRAJ50*01 CASSSTQSGDQPQHF TRBV7-9*01 TRBJ1-5*01 HLA-B*08:01 B2M MHCI RAKFKQLL BZLF1 EBV PMID:34811538 tetramer-sort yes amplicon-seq effector memory T cells T1D T1D_4 chip0423_36668 PBMC +6190 CIGKEGGAADGLTF TRAV26-1*01 TRAJ45*01 CASSLAVGEGPQHF TRBV7-9*01 TRBJ1-5*01 HLA-B*08:01 B2M MHCI RAKFKQLL BZLF1 EBV PMID:34811538 tetramer-sort yes amplicon-seq effector memory T cells T1D T1D_4 chip0423_713033 PBMC +6191 CASSLAVGEGPQHF TRBV7-9*01 TRBJ1-5*01 HLA-B*08:01 B2M MHCI RAKFKQLL BZLF1 EBV PMID:34811538 tetramer-sort yes amplicon-seq effector memory T cells T1D T1D_4 chip0423_551549 PBMC +6192 CASSLAGREGTQYF TRBV11-3*01 TRBJ2-3*01 HLA-B*08:01 B2M MHCI ELRSRYWAI NP InfluenzaA PMID:34811538 tetramer-sort yes amplicon-seq transitional T cells between effector and memory populations T1D T1D_6 chip0423_747934 PBMC +6193 CAATETSYDKVIF TRAV13-1*01 TRAJ50*01 CASSFLGQHSTDTQYF TRBV7-9*01 TRBJ2-3*01 HLA-B*08:01 B2M MHCI RAKFKQLL BZLF1 EBV PMID:34811538 tetramer-sort yes amplicon-seq effector T cells T1D T1D_5 chip0423_439093 PBMC +6194 CISRETSYDKVIF TRAV26-2*01 TRAJ50*01 CASSFTGDMLPEAFF TRBV12-3*01,TRBV12-4*01 TRBJ1-1*01 HLA-B*08:01 B2M MHCI RAKFKQLL BZLF1 EBV PMID:34811538 tetramer-sort yes amplicon-seq effector T cells T1D T1D_5 chip0423_407712 PBMC +6195 CAYSGGGSEKLVF TRAV38-1*01 TRAJ57*01 CASSQVRGGYEQYF TRBV3-1*01 TRBJ2-7*01 HLA-B*08:01 B2M MHCI RAKFKQLL BZLF1 EBV PMID:34811538 tetramer-sort yes amplicon-seq effector memory T cells T1D T1D_6 chip0423_315071 PBMC +6196 LCQQPSQca??acPGDGYTF TRBV14*01 TRBJ1-2*01 HLA-B*08:01 B2M MHCI QAKWRLQTL EBNA3A EBV PMID:34811538 tetramer-sort yes amplicon-seq effector memory T cells T1D T1D_4 chip0423_236030 PBMC +6197 CGTETDNNAGNMPTF TRAV30*01 TRAJ39*01 CASSIYSINEQFF TRBV19*01 TRBJ2-1*01 HLA-A*02:01 B2M MHCI GILGFVFTL M1 InfluenzaA PMID:34811538 tetramer-sort yes amplicon-seq transitional T cells between effector and memory populations T1D T1D_6 chip0423_461173 PBMC +6198 CILPLAGGTSYGKLTF TRAV26-2*01 TRAJ52*01 CASSLGQAYEQYF TRBV7-8*01 TRBJ2-7*01 HLA-B*08:01 B2M MHCI FLRGRAYGL EBNA3A EBV PMID:34811538 tetramer-sort yes amplicon-seq effector T cells T1D T1D_6 chip0423_223943 PBMC +6199 CASSDIREGQGEAFF TRBV10-2*01 TRBJ1-1*01 HLA-B*08:01 B2M MHCI QAKWRLQTL EBNA3A EBV PMID:34811538 tetramer-sort yes amplicon-seq transitional T cells between effector and memory populations T1D T1D_6 chip0423_35383 PBMC +6200 CAMSLSNFGNEKLTF TRAV12-3*01 TRAJ48*01 CASSYETDRGGSEQYF TRBV5-1*01 TRBJ2-7*01 HLA-A*02:01 B2M MHCI LLAGIGTVPI PGT HomoSapiens PMID:34811538 tetramer-sort yes amplicon-seq Naive T cells T1D T1D_6 chip0423_706700 PBMC +6201 CAMSLSNFGNEKLTF TRAV12-3*01 TRAJ48*01 CASSEYTTSDRVRENTGELFF TRBV25-1*01 TRBJ2-2*01 HLA-A*02:01 B2M MHCI LLAGIGTVPI PGT HomoSapiens PMID:34811538 tetramer-sort yes amplicon-seq Naive T cells T1D T1D_4 chip0423_798041 PBMC +6202 CAASDRLPGGSYIPTF TRAV23/DV6*01 TRAJ6*01 CSATNQYDGPDTEAFF TRBV20-1*01 TRBJ1-1*01 HLA-B*08:01 B2M MHCI RAKFKQLL BZLF1 EBV PMID:34811538 tetramer-sort yes amplicon-seq transitional T cells between effector and memory populations T1D T1D_4 chip0423_225617 PBMC +6203 CAVSDGEGAQKLVF TRAV8-6*01 TRAJ54*01 CASSLTVLAGPNTEAFF TRBV7-3*01 TRBJ1-1*01 HLA-B*08:01 B2M MHCI RAKFKQLL BZLF1 EBV PMID:34811538 tetramer-sort yes amplicon-seq effector memory T cells T1D T1D_4 chip0423_811324 PBMC +6204 CSARSTTYMNTEAFF TRBV20-1*01 TRBJ1-1*01 HLA-B*08:01 B2M MHCI YLKTNLFL G6PC2 HomoSapiens PMID:34811538 tetramer-sort yes amplicon-seq Naive T cells T1D T1D_5 chip0423_465416 PBMC +6205 CAAAETSYDKVIF TRAV13-1*01 TRAJ50*01 HLA-B*08:01 B2M MHCI RAKFKQLL BZLF1 EBV PMID:34811538 tetramer-sort yes amplicon-seq transitional T cells between effector and memory populations T1D T1D_5 chip0423_500119 PBMC +6206 CIVRAGGGADGLTF TRAV26-1*01 TRAJ45*01 CASSLAVGEGPQHF TRBV7-9*01 TRBJ1-5*01 HLA-B*08:01 B2M MHCI RAKFKQLL BZLF1 EBV PMID:34811538 tetramer-sort yes amplicon-seq effector T cells T1D T1D_4 chip0423_665312 PBMC +6207 CAASETSYDKVIS TRAV13-1*01 TRAJ50*01 CASSPLGQNTEAFF TRBV7-9*01 TRBJ1-1*01 HLA-B*08:01 B2M MHCI RAKFKQLL BZLF1 EBV PMID:34811538 tetramer-sort yes amplicon-seq effector memory T cells T1D T1D_5 chip0423_344393 PBMC +6208 CAGNPENTGNQFYF TRAV25*01 TRAJ49*01 CAWSPSGLGQPQHF TRBV30*01 TRBJ1-5*01 HLA-A*02:01 B2M MHCI LLAGIGTVPI PGT HomoSapiens PMID:34811538 tetramer-sort yes amplicon-seq Naive T cells T1D T1D_4 chip0423_566830 PBMC +6209 CAVTGGADGLTF TRAV12-2*01 TRAJ45*01 CASSDSGIETQYF TRBV5-4*01 TRBJ2-5*01 HLA-A*02:01 B2M MHCI LLAGIGTVPI PGT HomoSapiens PMID:34811538 tetramer-sort yes amplicon-seq central memory T cells healthy healthy_3 chip0423_136736 PBMC +6210 CASSFPRRQEVTGELFF TRBV12-3*01,TRBV12-4*01 TRBJ2-2*01 HLA-B*08:01 B2M MHCI RAKFKQLL BZLF1 EBV PMID:34811538 tetramer-sort yes amplicon-seq effector memory T cells T1D T1D_5 chip0423_385140 PBMC +6211 CAASAGLYSGAGRYQLTF TRAV29/DV5*01 TRAJ28*01 CASSLNPVLRLDTQYF TRBV28*01 TRBJ2-3*01 HLA-B*08:01 B2M MHCI QAKWRLQTL EBNA3A EBV PMID:34811538 tetramer-sort yes amplicon-seq central memory T cells T1D T1D_4 chip0423_334732 PBMC +6212 CASSQVNNPGDGYTF TRBV14*01 TRBJ1-2*01 HLA-B*08:01 B2M MHCI QAKWRLQTL EBNA3A EBV PMID:34811538 tetramer-sort yes amplicon-seq effector memory T cells T1D T1D_4 chip0423_651447 PBMC +6213 CIVREGGGADGLTF TRAV26-1*01 TRAJ45*01 CASSLAVGEGPQHF TRBV7-9*01 TRBJ1-5*01 HLA-B*08:01 B2M MHCI RAKFKQLL BZLF1 EBV PMID:34811538 tetramer-sort yes amplicon-seq effector T cells T1D T1D_4 chip0423_425750 PBMC +6214 CAATETSYDKVIF TRAV13-1*01 TRAJ50*01 CASSPLGSNEKLFF TRBV7-9*01 TRBJ1-4*01 HLA-B*08:01 B2M MHCI RAKFKQLL BZLF1 EBV PMID:34811538 tetramer-sort yes amplicon-seq effector memory T cells T1D T1D_5 chip0423_160185 PBMC +6215 CAVREYGNKLVF TRAV1-2*01 TRAJ47*01 CASSLAGREGTQYF TRBV11-3*01 TRBJ2-3*01 HLA-B*08:01 B2M MHCI ELRSRYWAI NP InfluenzaA PMID:34811538 tetramer-sort yes amplicon-seq transitional T cells between effector and memory populations T1D T1D_6 chip0423_3948 PBMC +6216 CASSFTGSSGNTIYF TRBV12-3*01,TRBV12-4*01 TRBJ1-3*01 HLA-B*08:01 B2M MHCI RAKFKQLL BZLF1 EBV PMID:34811538 tetramer-sort yes amplicon-seq effector T cells T1D T1D_5 chip0423_647503 PBMC +6217 CASSLAVGEGPQHF TRBV7-9*01 TRBJ1-5*01 HLA-B*08:01 B2M MHCI RAKFKQLL BZLF1 EBV PMID:34811538 tetramer-sort yes amplicon-seq effector memory T cells T1D T1D_4 chip0423_530068 PBMC +6218 CAVNSGNTPLVF TRAV1-2*01 TRAJ29*01 CASSPVNNPGDGYTF TRBV14*01 TRBJ1-2*01 HLA-B*08:01 B2M MHCI QAKWRLQTL EBNA3A EBV PMID:34811538 tetramer-sort yes amplicon-seq effector memory T cells T1D T1D_4 chip0423_71981 PBMC +6219 CAATSTSYDKLIF TRAV13-1*01 TRAJ50*01 CASSLLGVRDRENEQYF TRBV11-1*01 TRBJ2-7*01 HLA-B*08:01 B2M MHCI RAKFKQLL BZLF1 EBV PMID:34811538 tetramer-sort yes amplicon-seq effector T cells T1D T1D_5 chip0423_435161 PBMC +6220 CATVPDAGGTRYGKLTF TRAV17*01 TRAJ52*01 CASSVSGAPYEQYF TRBV9*01 TRBJ2-7*01 HLA-B*08:01 B2M MHCI FLRGRAYGL EBNA3A EBV PMID:34811538 tetramer-sort yes amplicon-seq effector T cells T1D T1D_6 chip0423_524527 PBMC +6221 CAESIGDDKIIF TRAV5*01 TRAJ30*01 CARRRAQG??tRTNSPLHF TRBV5-1*01 TRBJ1-6*01 HLA-B*08:01 B2M MHCI RAKFKQLL BZLF1 EBV PMID:34811538 tetramer-sort yes amplicon-seq effector T cells T1D T1D_4 chip0423_158110 PBMC +6222 CAASETSYDKVIF TRAV13-1*01 TRAJ50*01 CASSSTGGGDQPQHF TRBV7-9*01 TRBJ1-5*01 HLA-B*08:01 B2M MHCI RAKFKQLL BZLF1 EBV PMID:34811538 tetramer-sort yes amplicon-seq effector memory T cells T1D T1D_4 chip0423_734293 PBMC +6223 CASSQVNNPGDGYTF TRBV14*01 TRBJ1-2*01 HLA-B*08:01 B2M MHCI QAKWRLQTL EBNA3A EBV PMID:34811538 tetramer-sort yes amplicon-seq effector memory T cells T1D T1D_4 chip0423_239853 PBMC +6224 CASSFRGQGLGEQYF TRBV7-9*01 TRBJ2-7*01 HLA-B*08:01 B2M MHCI RAKFKQLL BZLF1 EBV PMID:34811538 tetramer-sort yes amplicon-seq effector memory T cells T1D T1D_5 chip0423_407471 PBMC +6225 CIVRQGGAADGLPF TRAV26-1*01 TRAJ45*01 CASSLAVGEGPQHF TRBV7-9*01 TRBJ1-5*01 HLA-B*08:01 B2M MHCI RAKFKQLL BZLF1 EBV PMID:34811538 tetramer-sort yes amplicon-seq effector T cells T1D T1D_4 chip0423_586408 PBMC +6226 CILGMPGGGADGLTF TRAV26-2*01 TRAJ45*01 CASSMGNAFGKLFF TRBV6-1*01 TRBJ1-4*01 HLA-B*08:01 B2M MHCI FLRGRAYGL EBNA3A EBV PMID:34811538 tetramer-sort yes amplicon-seq effector memory T cells T1D T1D_4 chip0423_365287 PBMC +6227 CASSLELGLPYEQYF TRBV5-1*01 TRBJ2-7*01 HLA-B*08:01 B2M MHCI QAKWRLQTL EBNA3A EBV PMID:34811538 tetramer-sort yes amplicon-seq effector memory T cells T1D T1D_4 chip0423_252135 PBMC +6228 LRCETSRGKLIF TRAV1-1*01 TRAJ23*01 CATSDSLYQETQYF TRBV24-1*01 TRBJ2-5*01 HLA-A*02:01 B2M MHCI IQATVMIIV ZNT8 HomoSapiens PMID:34811538 tetramer-sort yes amplicon-seq Naive T cells T1D T1D_6 chip0423_126854 PBMC +6229 CASQGGSQGNLIF TRAV20*01 TRAJ42*01 CASSLGGQTETQYF TRBV13*01 TRBJ2-5*01 HLA-A*02:01 B2M MHCI TLLANVTAV VP6 RotavirusA PMID:34811538 tetramer-sort yes amplicon-seq transitional T cells between effector and memory populations T1D T1D_6 chip0423_169038 PBMC +6230 CSAGRDGTNEKLFF TRBV29-1*01 TRBJ1-4*01 HLA-A*02:01 B2M MHCI GLCTLVAML BLMF1 EBV PMID:34811538 tetramer-sort yes amplicon-seq effector memory T cells T1D T1D_6 chip0423_665594 PBMC +6231 CAVGAGEGAPKLVF TRAV8-6*01 TRAJ54*01 CASSLTVLAGPNTEAFF TRBV7-3*01 TRBJ1-1*01 HLA-B*08:01 B2M MHCI RAKFKQLL BZLF1 EBV PMID:34811538 tetramer-sort yes amplicon-seq effector memory T cells T1D T1D_4 chip0423_825880 PBMC +6232 CAATETSYDKVIF TRAV13-1*01 TRAJ50*01 CASSPLGCNEKLFF TRBV7-9*01 TRBJ1-4*01 HLA-B*08:01 B2M MHCI RAKFKQLL BZLF1 EBV PMID:34811538 tetramer-sort yes amplicon-seq effector T cells T1D T1D_5 chip0423_270423 PBMC +6233 CIVREGGGADGLTF TRAV26-1*01 TRAJ45*01 CASSLAVGEGPQHF TRBV7-9*01 TRBJ1-5*01 HLA-B*08:01 B2M MHCI RAKFKQLL BZLF1 EBV PMID:34811538 tetramer-sort yes amplicon-seq effector memory T cells T1D T1D_4 chip0423_193202 PBMC +6234 CAATETSYDKVIF TRAV13-1*01 TRAJ50*01 CASSSASNTEAFF TRBV7-9*01 TRBJ1-1*01 HLA-B*08:01 B2M MHCI RAKFKQLL BZLF1 EBV PMID:34811538 tetramer-sort yes amplicon-seq transitional T cells between effector and memory populations T1D T1D_5 chip0423_636531 PBMC +6235 CAAVNSNSGYALNF TRAV13-1*01 TRAJ41*01 HLA-A*02:01 B2M MHCI TLLANVTAV VP6 RotavirusA PMID:34811538 tetramer-sort yes amplicon-seq transitional T cells between effector and memory populations T1D T1D_6 chip0423_617390 PBMC +6236 CAENIEGTALIF TRAV13-2*01 TRAJ15*01 CASSLSSGGRGEQYF TRBV4-1*01 TRBJ2-7*01 HLA-B*08:01 B2M MHCI LNHLKATPI IAPP HomoSapiens PMID:34811538 tetramer-sort yes amplicon-seq transitional T cells between effector and memory populations T1D T1D_6 chip0423_719247 PBMC +6237 CAVSDGEGAQKLVF TRAV8-6*01 TRAJ54*01 CASSLTVLAGPNTDAFF TRBV7-3*01 TRBJ1-1*01 HLA-B*08:01 B2M MHCI RAKFKQLL BZLF1 EBV PMID:34811538 tetramer-sort yes amplicon-seq effector memory T cells T1D T1D_4 chip0423_488634 PBMC +6238 CATDAGAGNMLTF TRAV17*01 TRAJ39*01 HLA-A*01:01 B2M MHCI ALDIEIATY GFAP HomoSapiens PMID:34811538 tetramer-sort yes amplicon-seq Naive T cells T1D T1D_5 chip0423_331234 PBMC +6239 CALSEAGTPSGGSYIPTF TRAV19*01 TRAJ6*01 CASSYGGYEQYF TRBV6-5*01 TRBJ2-7*01 HLA-A*02:01 B2M MHCI GILGFVFTL M1 InfluenzaA PMID:34811538 tetramer-sort yes amplicon-seq transitional T cells between effector and memory populations T1D T1D_6 chip0423_35134 PBMC +6240 CILPLAVGTSYGKPTF TRAV26-2*01 TRAJ52*01 CASSLGQAYEQYF TRBV7-8*01 TRBJ2-7*01 HLA-B*08:01 B2M MHCI FLRGRAYGL EBNA3A EBV PMID:34811538 tetramer-sort yes amplicon-seq effector memory T cells T1D T1D_6 chip0423_228435 PBMC +6241 CAVSDGEGAQKLVF TRAV8-6*01 TRAJ54*01 HLA-B*08:01 B2M MHCI RAKFKQLL BZLF1 EBV PMID:34811538 tetramer-sort yes amplicon-seq effector T cells T1D T1D_4 chip0423_573721 PBMC +6242 CAVNSGNTPLVF TRAV1-2*01 TRAJ29*01 CASSQVNNPGDGYTF TRBV14*01 TRBJ1-2*01 HLA-B*08:01 B2M MHCI QAKWRLQTL EBNA3A EBV PMID:34811538 tetramer-sort yes amplicon-seq effector memory T cells T1D T1D_4 chip0423_348593 PBMC +6243 CAARETSYDKVIF TRAV13-1*01 TRAJ50*01 HLA-B*08:01 B2M MHCI RAKFKQLL BZLF1 EBV PMID:34811538 tetramer-sort yes amplicon-seq effector memory T cells T1D T1D_5 chip0423_88799 PBMC +6244 CAATETSYDKVIF TRAV13-1*01 TRAJ50*01 CASSPLGSNEKLFF TRBV7-9*01 TRBJ1-4*01 HLA-B*08:01 B2M MHCI RAKFKQLL BZLF1 EBV PMID:34811538 tetramer-sort yes amplicon-seq effector memory T cells T1D T1D_5 chip0423_572683 PBMC +6245 CAYGQNFVF TRAV8-3*01 TRAJ26*01 CASSAGSDYGYTF TRBV9*01 TRBJ1-2*01 HLA-A*02:01 B2M MHCI YLLEMLWRL LMP1 EBV PMID:34811538 tetramer-sort yes amplicon-seq effector memory T cells T1D T1D_4 chip0423_572039 PBMC +6246 CIVEETSYDKVIF TRAV26-1*01 TRAJ50*01 HLA-B*08:01 B2M MHCI RAKFKQLL BZLF1 EBV PMID:34811538 tetramer-sort yes amplicon-seq effector memory T cells T1D T1D_5 chip0423_410399 PBMC +6247 CASSLGDSPLHF TRAV14/DV4*01 TRAJ11*01 CASSLGDSPLHF TRBV12-3*01,TRBV12-4*01 TRBJ1-6*01 HLA-A*02:01 B2M MHCI LLAGIGTVPI PGT HomoSapiens PMID:34811538 tetramer-sort yes amplicon-seq Naive T cells T1D T1D_6 chip0423_110127 PBMC +6248 CASSDIREGQGEAFF TRBV10-2*01 TRBJ1-1*01 HLA-B*08:01 B2M MHCI QAKWRLQTL EBNA3A EBV PMID:34811538 tetramer-sort yes amplicon-seq central memory T cells T1D T1D_6 chip0423_780449 PBMC +6249 CAEPTASGGSYIPTF TRAV5*01 TRAJ6*01 HLA-B*08:01 B2M MHCI FLRGRAYGL EBNA3A EBV PMID:34811538 tetramer-sort yes amplicon-seq Naive T cells T1D T1D_5 chip0423_184501 PBMC +6250 CASSLGQAYEQYF TRBV7-8*01 TRBJ2-7*01 HLA-B*08:01 B2M MHCI FLRGRAYGL EBNA3A EBV PMID:34811538 tetramer-sort yes amplicon-seq effector T cells T1D T1D_6 chip0423_244633 PBMC +6251 CAVREYGNKLVF TRAV1-2*01 TRAJ47*01 CSARSTTYMNTEAFF TRBV20-1*01 TRBJ1-1*01 HLA-B*08:01 B2M MHCI ELRSRYWAI NP InfluenzaA PMID:34811538 tetramer-sort yes amplicon-seq transitional T cells between effector and memory populations T1D T1D_6 chip0423_631304 PBMC +6252 CAARETSYDKVIF TRAV13-1*01 TRAJ50*01 HLA-B*08:01 B2M MHCI RAKFKQLL BZLF1 EBV PMID:34811538 tetramer-sort yes amplicon-seq effector memory T cells T1D T1D_5 chip0423_860139 PBMC +6253 CIVREGGGADGLTF TRAV26-1*01 TRAJ45*01 CASSLAVGEGPQHL TRBV7-9*01 TRBJ1-5*01 HLA-B*08:01 B2M MHCI RAKFKQLL BZLF1 EBV PMID:34811538 tetramer-sort yes amplicon-seq effector memory T cells T1D T1D_4 chip0423_533847 PBMC +6254 CAVSDREGARKLVL TRAV8-6*01 TRAJ54*01 CASSLTVLAGPNTEAFF TRBV7-3*01 TRBJ1-1*01 HLA-B*08:01 B2M MHCI RAKFKQLL BZLF1 EBV PMID:34811538 tetramer-sort yes amplicon-seq effector memory T cells T1D T1D_4 chip0423_235175 PBMC +6255 CILPLEGGARYGALPF TRAV26-2*01 TRAJ52*01 CASSSGQAYEQYF TRBV7-8*01 TRBJ2-7*01 HLA-B*08:01 B2M MHCI FLRGRAYGL EBNA3A EBV PMID:34811538 tetramer-sort yes amplicon-seq effector memory T cells T1D T1D_4 chip0423_428746 PBMC +6256 CAVAETSNTGGFKTIF TRAV12-2*01 TRAJ9*01 CASSLMAGSTDTQYF TRBV27*01 TRBJ2-3*01 HLA-A*02:01 B2M MHCI YLQQNWWTL LMP1 EBV PMID:34811538 tetramer-sort yes amplicon-seq central memory T cells T1D T1D_4 chip0423_735305 PBMC +6257 CAVSRGYQKVTF TRAV12-2*01 TRAJ13*01 CATENRVSYEQYF TRBV11-3*01 TRBJ2-7*01 HLA-A*01:01 B2M MHCI CTELKLSDY NP InfluenzaA PMID:34811538 tetramer-sort yes amplicon-seq Naive T cells T1D T1D_5 chip0423_324315 PBMC +6258 GVLALAGGASYGTLTV TRAV26-2*01 TRAJ52*01 CASSLGQAYEQYF TRBV7-8*01 TRBJ2-7*01 HLA-B*08:01 B2M MHCI FLRGRAYGL EBNA3A EBV PMID:34811538 tetramer-sort yes amplicon-seq effector memory T cells T1D T1D_6 chip0423_251681 PBMC +6259 CASSLAVGEGPQHF TRBV7-9*01 TRBJ1-5*01 HLA-B*08:01 B2M MHCI RAKFKQLL BZLF1 EBV PMID:34811538 tetramer-sort yes amplicon-seq effector memory T cells T1D T1D_4 chip0423_649338 PBMC +6260 CASSSLGGPGNTIYF TRBV7-9*01 TRBJ1-3*01 HLA-B*08:01 B2M MHCI RAKFKQLL BZLF1 EBV PMID:34811538 tetramer-sort yes amplicon-seq effector T cells T1D T1D_5 chip0423_562460 PBMC +6261 CALSEATGADPSAF TRAV9-2*01 TRAJ27*01 CASSLGQGWVTQYF TRBV5-5*01 TRBJ2-5*01 HLA-B*08:01 B2M MHCI YLKTNLFL G6PC2 HomoSapiens PMID:34811538 tetramer-sort yes amplicon-seq Naive T cells T1D T1D_6 chip0423_191697 PBMC +6263 CILPLAGGTSYGKLTF TRAV26-2*01 TRAJ52*01 CASSLGQAYEQYF TRBV7-8*01 TRBJ2-7*01 HLA-B*08:01 B2M MHCI FLRGRAYGL EBNA3A EBV PMID:34811538 tetramer-sort yes amplicon-seq effector memory T cells T1D T1D_6 chip0423_132835 PBMC +6264 CVVIDYGQNFVF TRAV8-2*01 TRAJ26*01 CASSAWGGADPTDTQYF TRBV9*01 TRBJ2-3*01 HLA-B*08:01 B2M MHCI LRLRLDQL GFAP HomoSapiens PMID:34811538 tetramer-sort yes amplicon-seq transitional T cells between effector and memory populations T1D T1D_6 chip0423_91140 PBMC +6265 CAGGPDGQTPLF TRAV12-2*01 TRAJ16*01 CASSIRAAYEQYF TRBV19*01 TRBJ2-7*01 HLA-A*02:01 B2M MHCI GILGFVFTL M1 InfluenzaA PMID:34811538 tetramer-sort yes amplicon-seq transitional T cells between effector and memory populations T1D T1D_6 chip0423_873031 PBMC +6266 CAMSRSNFGNEKLTF TRAV12-3*01 TRAJ48*01 HLA-A*02:01 B2M MHCI LLAGIGTVPI PGT HomoSapiens PMID:34811538 tetramer-sort yes amplicon-seq Naive T cells T1D T1D_6 chip0423_823655 PBMC +6267 CAMSLSNFGNEKLTF TRAV12-3*01 TRAJ48*01 CASSVGGTGDHGYTF TRBV9*01 TRBJ1-2*01 HLA-A*02:01 B2M MHCI LLAGIGTVPI PGT HomoSapiens PMID:34811538 tetramer-sort yes amplicon-seq Naive T cells T1D T1D_6 chip0423_652065 PBMC +6268 CASRRNTDKLIF TRAV12-2*01 TRAJ34*01 CASSSGNTIYF TRBV6-1*01 TRBJ1-3*01 HLA-A*01:01 B2M MHCI LTSLTILQLY G6PC2 HomoSapiens PMID:34811538 tetramer-sort yes amplicon-seq effector memory T cells tet_neg chip0423_666761 PBMC +6269 CAVSDGEGAQKLVF TRAV8-6*01 TRAJ54*01 CASSLTVLAGPNTEAFF TRBV7-3*01 TRBJ1-1*01 HLA-B*08:01 B2M MHCI RAKFKQLL BZLF1 EBV PMID:34811538 tetramer-sort yes amplicon-seq effector memory T cells T1D T1D_4 chip0423_638525 PBMC +6270 CAVTPNSGNTPLVF TRAV12-2*01 TRAJ29*01 CSAPPVPGNEKLFF TRBV20-1*01 TRBJ1-4*01 HLA-A*02:01 B2M MHCI TLLANVTAV VP6 RotavirusA PMID:34811538 tetramer-sort yes amplicon-seq transitional T cells between effector and memory populations T1D T1D_6 chip0423_827937 PBMC +6271 CASSQVNNPGDGYTF TRBV14*01 TRBJ1-2*01 HLA-B*08:01 B2M MHCI QAKWRLQTL EBNA3A EBV PMID:34811538 tetramer-sort yes amplicon-seq effector memory T cells T1D T1D_4 chip0423_102238 PBMC +6272 CILPLAGGTSYGKLTF TRAV26-2*01 TRAJ52*01 CASSLGQAYEQYF TRBV7-8*01 TRBJ2-7*01 HLA-B*08:01 B2M MHCI FLRGRAYGL EBNA3A EBV PMID:34811538 tetramer-sort yes amplicon-seq effector memory T cells T1D T1D_6 chip0423_771453 PBMC +6273 CASSLAVGEGPQHF TRBV7-9*01 TRBJ1-5*01 HLA-B*08:01 B2M MHCI RAKFKQLL BZLF1 EBV PMID:34811538 tetramer-sort yes amplicon-seq effector memory T cells T1D T1D_4 chip0423_768697 PBMC +6274 CAVTETSYDKVIF TRAV13-1*01 TRAJ50*01 CASSLVGDSTNYGYTF TRBV7-9*01 TRBJ1-2*01 HLA-B*08:01 B2M MHCI RAKFKQLL BZLF1 EBV PMID:34811538 tetramer-sort yes amplicon-seq effector T cells T1D T1D_5 chip0423_663120 PBMC +6275 CILPLAGGTSYGKLTF TRAV26-2*01 TRAJ52*01 CASSLGQAYEQYF TRBV7-8*01 TRBJ2-7*01 HLA-B*08:01 B2M MHCI FLRGRAYGL EBNA3A EBV PMID:34811538 tetramer-sort yes amplicon-seq effector memory T cells T1D T1D_6 chip0423_82889 PBMC +6276 CAVIGISQGGSEKLVF TRAV41*01 TRAJ57*01 CSAEARGGVTNTGEPFF TRBV20-1*01 TRBJ2-2*01 HLA-A*02:01 B2M MHCI GIIYIIYKL P3A CoxsackievirusB PMID:34811538 tetramer-sort yes amplicon-seq Naive T cells T1D T1D_6 chip0423_124676 PBMC +6277 CAVNSGNTPLVF TRAV1-2*01 TRAJ29*01 CASSQVNNPGDGYTF TRBV14*01 TRBJ1-2*01 HLA-B*08:01 B2M MHCI QAKWRLQTL EBNA3A EBV PMID:34811538 tetramer-sort yes amplicon-seq effector memory T cells T1D T1D_4 chip0423_621425 PBMC +6278 CAMRAIAGANNLFF TRAV14/DV4*01 TRAJ36*01 HLA-B*08:01 B2M MHCI RAKFKQLL BZLF1 EBV PMID:34811538 tetramer-sort yes amplicon-seq effector T cells T1D T1D_5 chip0423_474626 PBMC +6279 CASTQVDRPNYGYTF TRBV7-9*01 TRBJ1-2*01 HLA-B*08:01 B2M MHCI RAKFKQLL BZLF1 EBV PMID:34811538 tetramer-sort yes amplicon-seq effector T cells T1D T1D_5 chip0423_619948 PBMC +6280 WAVR*TQg?tSGCALYF TRAV21*01 TRAJ41*01 CASSPKIGFEKLFF TRBV9*01 TRBJ1-4*01 HLA-A*02:01 B2M MHCI SLISGMWLL VP2 RotavirusA PMID:34811538 tetramer-sort yes amplicon-seq Naive T cells T1D T1D_6 chip0423_38695 PBMC +6281 CASSLSNRQREPQHF TRBV27*01 TRBJ1-5*01 HLA-B*08:01 B2M MHCI MMIARFKM GAD2 HomoSapiens PMID:34811538 tetramer-sort yes amplicon-seq Naive T cells T1D T1D_4 chip0423_105877 PBMC +6282 CIVREGGGADGLPF TRAV26-1*01 TRAJ45*01 HLA-B*08:01 B2M MHCI RAKFKQLL BZLF1 EBV PMID:34811538 tetramer-sort yes amplicon-seq effector T cells T1D T1D_4 chip0423_421540 PBMC +6283 CASSQVNNPGDGYTF TRBV14*01 TRBJ1-2*01 HLA-B*08:01 B2M MHCI QAKWRLQTL EBNA3A EBV PMID:34811538 tetramer-sort yes amplicon-seq effector memory T cells T1D T1D_4 chip0423_798106 PBMC +6284 CASSLGQAYEQYS TRBV7-8*01 TRBJ2-7*01 HLA-B*08:01 B2M MHCI FLRGRAYGL EBNA3A EBV PMID:34811538 tetramer-sort yes amplicon-seq effector memory T cells T1D T1D_6 chip0423_873785 PBMC +6285 CASSQDDRDRRLLHTGELFF TRBV14*01 TRBJ2-2*01 HLA-A*02:01 B2M MHCI LLAGIGTVPI PGT HomoSapiens PMID:34811538 tetramer-sort yes amplicon-seq Naive T cells T1D T1D_6 chip0423_297451 PBMC +6286 CIVREGGGADGLPF TRAV26-1*01 TRAJ45*01 CASSLAVGEGPQHF TRBV7-9*01 TRBJ1-5*01 HLA-B*08:01 B2M MHCI RAKFKQLL BZLF1 EBV PMID:34811538 tetramer-sort yes amplicon-seq effector T cells T1D T1D_4 chip0423_524259 PBMC +6287 CAMGASNFGNEKLTF TRAV12-3*01 TRAJ48*01 CASSQELAGGGEQFF TRBV3-1*01 TRBJ2-1*01 HLA-A*02:01 B2M MHCI LLAGIGTVPI PGT HomoSapiens PMID:34811538 tetramer-sort yes amplicon-seq Naive T cells T1D T1D_4 chip0423_36283 PBMC +6288 CILPLAGGTSYGKLTF TRAV26-2*01 TRAJ52*01 CSVGTGGTNEKLFF TRBV29-1*01 TRBJ1-4*01 HLA-A*02:01 B2M MHCI GLCTLVAML BLMF1 EBV PMID:34811538 tetramer-sort yes amplicon-seq effector memory T cells T1D T1D_4 chip0423_874048 PBMC +6289 CAASEGNEKLTF TRAV13-1*01 TRAJ48*01 CASSLTGLHEQYF TRBV7-3*01 TRBJ2-7*01 HLA-B*08:01 B2M MHCI RAKFKQLL BZLF1 EBV PMID:34811538 tetramer-sort yes amplicon-seq effector memory T cells T1D T1D_4 chip0423_694807 PBMC +6290 CILPLAGGTSYGKLTF TRAV26-2*01 TRAJ52*01 CASRLGQAYEQYF TRBV7-8*01 TRBJ2-7*01 HLA-B*08:01 B2M MHCI FLRGRAYGL EBNA3A EBV PMID:34811538 tetramer-sort yes amplicon-seq effector memory T cells T1D T1D_6 chip0423_29362 PBMC +6291 CASSLAVGEGPQHF TRBV7-9*01 TRBJ1-5*01 HLA-B*08:01 B2M MHCI RAKFKQLL BZLF1 EBV PMID:34811538 tetramer-sort yes amplicon-seq effector T cells T1D T1D_4 chip0423_331204 PBMC +6292 CLLPLAGGPSYGKLTF TRAV26-2*01 TRAJ52*01 CASSLGQAYEQYF TRBV7-8*01 TRBJ2-7*01 HLA-B*08:01 B2M MHCI FLRGRAYGL EBNA3A EBV PMID:34811538 tetramer-sort yes amplicon-seq effector memory T cells T1D T1D_4 chip0423_228814 PBMC +6293 CASSPQGGNYGYTF TRBV6-1*01 TRBJ1-2*01 HLA-A*02:01 B2M MHCI FLYALALLL LMP2 EBV PMID:34811538 tetramer-sort yes amplicon-seq effector memory T cells T1D T1D_4 chip0423_591267 PBMC +6294 RAVVLYGGSHGNLIF TRAV8-3*01 TRAJ42*01 CSVPAGTEAFF TRBV29-1*01 TRBJ1-1*01 HLA-B*08:01 B2M MHCI ILKLQVFL IAPP HomoSapiens PMID:34811538 tetramer-sort yes amplicon-seq Naive T cells T1D T1D_6 chip0423_22762 PBMC +6295 CASTSPVGFSGYTF TRBV7-2*01 TRBJ1-2*01 HLA-B*08:01 B2M MHCI RAKFKQLL BZLF1 EBV PMID:34811538 tetramer-sort yes amplicon-seq effector memory T cells T1D T1D_5 chip0423_594607 PBMC +6296 CAEMETSYDKVIF TRAV13-2*01 TRAJ50*01 CASTHPQDVNTGELFF TRBV7-9*01 TRBJ2-2*01 HLA-B*08:01 B2M MHCI RAKFKQLL BZLF1 EBV PMID:34811538 tetramer-sort yes amplicon-seq effector memory T cells T1D T1D_5 chip0423_162760 PBMC +6297 CASSIYSINEQFL TRBV19*01 TRBJ2-1*01 HLA-A*02:01 B2M MHCI GILGFVFTL M1 InfluenzaA PMID:34811538 tetramer-sort yes amplicon-seq effector T cells T1D T1D_6 chip0423_622109 PBMC +6298 CAMSGFHQTGANNLFF TRAV12-3*01 TRAJ36*01 CGGKPGRGGYGQYF TRBV6-1*01 TRBJ2-7*01 HLA-B*08:01 B2M MHCI QAKWRLQTL EBNA3A EBV PMID:34811538 tetramer-sort yes amplicon-seq transitional T cells between effector and memory populations T1D T1D_6 chip0423_507038 PBMC +6299 CATDAVRGGKLIF TRAV17*01 TRAJ23*01 CASSLNRPGEQYF TRBV5-1*01 TRBJ2-7*01 HLA-A*02:01 B2M MHCI ALGIGILTV MART1 HomoSapiens PMID:34811538 tetramer-sort yes amplicon-seq Naive T cells T1D T1D_6 chip0423_395203 PBMC +6300 CIAVTStc??ccGNQFYF TRAV26-1*01 TRAJ49*01 CSAGRDGTNEKLFF TRBV29-1*01 TRBJ1-4*01 HLA-A*02:01 B2M MHCI GLCTLVAML BLMF1 EBV PMID:34811538 tetramer-sort yes amplicon-seq effector memory T cells T1D T1D_6 chip0423_873435 PBMC +6302 CVVNEASGFCKATDL TRAV12-1*01 TRAJ22*01 HLA-A*02:01 B2M MHCI LLQEYNWEL GAD65 HomoSapiens PMID:34811538 tetramer-sort yes amplicon-seq Naive T cells T1D T1D_4 chip0423_566237 PBMC +6303 CAVSPAMa?tAGCMLAF TRAV3*01 TRAJ39*01 CSVGTGGTNEKLFF TRBV29-1*01 TRBJ1-4*01 HLA-A*02:01 B2M MHCI GLCTLVAML BLMF1 EBV PMID:34811538 tetramer-sort yes amplicon-seq effector memory T cells T1D T1D_6 chip0423_244487 PBMC +6304 CASSLAVGEGPQHF TRBV7-9*01 TRBJ1-5*01 HLA-B*08:01 B2M MHCI RAKFKQLL BZLF1 EBV PMID:34811538 tetramer-sort yes amplicon-seq effector memory T cells T1D T1D_4 chip0423_181588 PBMC +6305 CILPLAGGTSYGKLTF TRAV26-2*01 TRAJ52*01 CASSLGQAYEQYF TRBV7-8*01 TRBJ2-7*01 HLA-B*08:01 B2M MHCI FLRGRAYGL EBNA3A EBV PMID:34811538 tetramer-sort yes amplicon-seq central memory T cells T1D T1D_6 chip0423_862922 PBMC +6306 CASAISNFGNEKLTF TRAV12-3*01 TRAJ48*01 CASSLDDDGYTF TRBV9*01 TRBJ1-2*01 HLA-A*02:01 B2M MHCI LLAGIGTVPI PGT HomoSapiens PMID:34811538 tetramer-sort yes amplicon-seq Naive T cells T1D T1D_4 chip0423_848415 PBMC +6307 CASSIQRDRAGEAFF TRBV19*01 TRBJ1-1*01 HLA-A*01:01 B2M MHCI CTELKLSDY NP InfluenzaA PMID:34811538 tetramer-sort yes amplicon-seq Naive T cells T1D T1D_6 chip0423_727283 PBMC +6308 CAASWSNFGNEKLTF TRAV12-3*01 TRAJ48*01 HLA-A*02:01 B2M MHCI LLAGIGTVPI PGT HomoSapiens PMID:34811538 tetramer-sort yes amplicon-seq Naive T cells T1D T1D_6 chip0423_203907 PBMC +6310 CALTTYGQNFVF TRAV38-1*01 TRAJ26*01 CSASRDSYEQYF TRBV20-1*01 TRBJ2-7*01 HLA-A*02:01 B2M MHCI YLLEMLWRL LMP1 EBV PMID:34811538 tetramer-sort yes amplicon-seq central memory T cells T1D T1D_4 chip0423_677891 PBMC +6311 CAGRSSSTGEYF TRBV6-2*01,TRBV6-3*01 TRBJ2-7*01 HLA-A*02:01 B2M MHCI YLLEMLWRL LMP1 EBV PMID:34811538 tetramer-sort yes amplicon-seq central memory T cells T1D T1D_4 chip0423_131564 PBMC +6312 CIVREGGGADGLPF TRAV26-1*01 TRAJ45*01 CASSLAVGEGPQHF TRBV7-9*01 TRBJ1-5*01 HLA-B*08:01 B2M MHCI RAKFKQLL BZLF1 EBV PMID:34811538 tetramer-sort yes amplicon-seq effector memory T cells T1D T1D_4 chip0423_661761 PBMC +6313 CAGPDTGNQFYF TRAV35*01 TRAJ49*01 CASQLAGGTGELFF TRBV24-1*01 TRBJ2-2*01 HLA-B*08:01 B2M MHCI RAKFKQLL BZLF1 EBV PMID:34811538 tetramer-sort yes amplicon-seq effector memory T cells T1D T1D_5 chip0423_124895 PBMC +6314 CAVSDGEGAQKLVF TRAV8-6*01 TRAJ54*01 CASSLTVLAGPNTEAFF TRBV7-3*01 TRBJ1-1*01 HLA-B*08:01 B2M MHCI RAKFKQLL BZLF1 EBV PMID:34811538 tetramer-sort yes amplicon-seq effector memory T cells T1D T1D_4 chip0423_515751 PBMC +6315 CASSVTSRPNTEAFF TRBV9*01 TRBJ1-1*01 HLA-A*02:01 B2M MHCI KMYAFTLES ZNT8 HomoSapiens PMID:34811538 tetramer-sort yes amplicon-seq Naive T cells T1D T1D_6 chip0423_792205 PBMC +6316 CILPLAGtg?C*L*KMKI TRAV26-2*01 TRAJ52*01 CASSLGQAYEQYF TRBV7-8*01 TRBJ2-7*01 HLA-B*08:01 B2M MHCI FLRGRAYGL EBNA3A EBV PMID:34811538 tetramer-sort yes amplicon-seq effector memory T cells T1D T1D_6 chip0423_578302 PBMC +6317 CAVNSGNTPLVF TRAV1-2*01 TRAJ29*01 CASSQVNNPGDGYTF TRBV14*01 TRBJ1-2*01 HLA-B*08:01 B2M MHCI QAKWRLQTL EBNA3A EBV PMID:34811538 tetramer-sort yes amplicon-seq effector memory T cells T1D T1D_4 chip0423_363691 PBMC +6318 CAGLLSGGGADGLTF TRAV27*01 TRAJ45*01 CASSHWAPYTADTEAFF TRBV3-1*01 TRBJ1-1*01 HLA-B*08:01 B2M MHCI YAKWKLCSA ZNT8 HomoSapiens PMID:34811538 tetramer-sort yes amplicon-seq Naive T cells T1D T1D_5 chip0423_812847 PBMC +6319 CACPSGNTPLVF TRAV12-2*01 TRAJ29*01 CASSYSGTEAFF TRBV6-5*01 TRBJ1-1*01 HLA-A*02:01 B2M MHCI ALAGIGILTV MART1 HomoSapiens PMID:34811538 tetramer-sort yes amplicon-seq Naive T cells T1D T1D_6 chip0423_730943 PBMC +6320 CSARDQVGNTIYF TRBV20-1*01 TRBJ1-3*01 HLA-A*02:01 B2M MHCI GLCTLVAML BLMF1 EBV PMID:34811538 tetramer-sort yes amplicon-seq effector memory T cells T1D T1D_6 chip0423_429281 PBMC +6321 CASSYSSTREYF TRBV6-2*01,TRBV6-3*01 TRBJ2-7*01 HLA-A*02:01 B2M MHCI YLLEMLWRL LMP1 EBV PMID:34811538 tetramer-sort yes amplicon-seq central memory T cells T1D T1D_4 chip0423_126816 PBMC +6322 CAVREYGNKLVS TRAV1-2*01 TRAJ47*01 CASSLAGREGTQYF TRBV11-3*01 TRBJ2-3*01 HLA-B*08:01 B2M MHCI ELRSRYWAI NP InfluenzaA PMID:34811538 tetramer-sort yes amplicon-seq transitional T cells between effector and memory populations T1D T1D_6 chip0423_445764 PBMC +6323 CILPLAGGTSYGKLTF TRAV26-2*01 TRAJ52*01 CASSSGQAYEQYF TRBV7-8*01 TRBJ2-7*01 HLA-B*08:01 B2M MHCI FLRGRAYGL EBNA3A EBV PMID:34811538 tetramer-sort yes amplicon-seq effector memory T cells T1D T1D_4 chip0423_141125 PBMC +6324 CVGEGAGRYQLTF TRAV25*01 TRAJ28*01 HLA-A*02:01 B2M MHCI CLGGLLTMV LMP2A EBV PMID:34811538 tetramer-sort yes amplicon-seq effector memory T cells T1D T1D_4 chip0423_749169 PBMC +6325 CILPLAGGTSYGKLTF TRAV26-2*01 TRAJ52*01 CASSLGQAYEQYF TRBV7-8*01 TRBJ2-7*01 HLA-B*08:01 B2M MHCI FLRGRAYGL EBNA3A EBV PMID:34811538 tetramer-sort yes amplicon-seq effector T cells T1D T1D_6 chip0423_64334 PBMC +6326 CASSPLAGTLGSYEQYF TRBV4-3*01 TRBJ2-7*01 HLA-A*02:01 B2M MHCI RLLPLLALL PREINS HomoSapiens PMID:34811538 tetramer-sort yes amplicon-seq Naive T cells T1D T1D_6 chip0423_668456 PBMC +6327 CAVCAPTWVVNIIF TRAV3*01 TRAJ30*01 HLA-B*08:01 B2M MHCI FLRGRAYGL EBNA3A EBV PMID:34811538 tetramer-sort yes amplicon-seq effector memory T cells T1D T1D_4 chip0423_469560 PBMC +6328 CASSFIAGNEQFF TRBV7-9*01 TRBJ2-1*01 HLA-A*02:01 B2M MHCI YLLEMLWRL LMP1 EBV PMID:34811538 tetramer-sort yes amplicon-seq central memory T cells T1D T1D_4 chip0423_274339 PBMC +6329 CASIPKQENTIYF TRBV12-3*01,TRBV12-4*01 TRBJ1-3*01 HLA-B*08:01 B2M MHCI RAKFKQLL BZLF1 EBV PMID:34811538 tetramer-sort yes amplicon-seq effector memory T cells T1D T1D_5 chip0423_152113 PBMC +6331 CAPMDSNYQLIW TRAV16*01 TRAJ33*01 CASAPGTGYGYTS TRBV6-1*01 TRBJ1-2*01 HLA-A*02:01 B2M MHCI TLLANVTAV VP6 RotavirusA PMID:34811538 tetramer-sort yes amplicon-seq transitional T cells between effector and memory populations T1D T1D_6 chip0423_521872 PBMC +6332 CAAAAPSSDKVII TRAV13-1*01 TRAJ50*01 CASSLVDRPYEQYF TRBV7-9*01 TRBJ2-7*01 HLA-B*08:01 B2M MHCI RAKFKQLL BZLF1 EBV PMID:34811538 tetramer-sort yes amplicon-seq effector memory T cells T1D T1D_5 chip0423_689151 PBMC +6333 CAAKETSYDKVIF TRAV13-1*01 TRAJ50*01 CASSLLGGTDTGELFF TRBV7-9*01 TRBJ2-2*01 HLA-B*08:01 B2M MHCI RAKFKQLL BZLF1 EBV PMID:34811538 tetramer-sort yes amplicon-seq transitional T cells between effector and memory populations T1D T1D_5 chip0423_29945 PBMC +6334 CASSQVNNPGDGYTF TRBV14*01 TRBJ1-2*01 HLA-B*08:01 B2M MHCI QAKWRLQTL EBNA3A EBV PMID:34811538 tetramer-sort yes amplicon-seq effector memory T cells T1D T1D_4 chip0423_109614 PBMC +6335 CGADATSGTYPYIF TRAV34*01 TRAJ40*01 CSVGSGEGYEQYF TRBV29-1*01 TRBJ2-7*01 HLA-B*08:01 B2M MHCI RAKFKQLL BZLF1 EBV PMID:34811538 tetramer-sort yes amplicon-seq effector T cells T1D T1D_4 chip0423_666772 PBMC +6337 CAAAETSYDKVIF TRAV13-1*01 TRAJ50*01 CASQLAGGTGELFF TRBV24-1*01 TRBJ2-2*01 HLA-B*08:01 B2M MHCI RAKFKQLL BZLF1 EBV PMID:34811538 tetramer-sort yes amplicon-seq effector memory T cells T1D T1D_5 chip0423_855055 PBMC +6338 CASSLLGSQNTEAFF TRAV36/DV7*01 TRAJ40*01 CASSLLGSQNTEAFF TRBV7-9*01 TRBJ1-1*01 HLA-B*08:01 B2M MHCI RAKFKQLL BZLF1 EBV PMID:34811538 tetramer-sort yes amplicon-seq effector T cells T1D T1D_5 chip0423_475241 PBMC +6339 CILPLAGGTSYGKLTF TRAV26-2*01 TRAJ52*01 HLA-B*08:01 B2M MHCI FLRGRAYGL EBNA3A EBV PMID:34811538 tetramer-sort yes amplicon-seq effector memory T cells T1D T1D_6 chip0423_831805 PBMC +6341 CASSLAVGEGPQHF TRBV7-9*01 TRBJ1-5*01 HLA-B*08:01 B2M MHCI RAKFKQLL BZLF1 EBV PMID:34811538 tetramer-sort yes amplicon-seq effector T cells T1D T1D_4 chip0423_149382 PBMC +6342 CAASETSYDKVIF TRAV13-1*01 TRAJ50*01 CASSLLGNNDSPLHF TRBV7-9*01 TRBJ1-6*01 HLA-B*08:01 B2M MHCI RAKFKQLL BZLF1 EBV PMID:34811538 tetramer-sort yes amplicon-seq effector memory T cells T1D T1D_5 chip0423_832683 PBMC +6343 CASSYTGESGSYEQYF TRBV12-3*01,TRBV12-4*01 TRBJ2-7*01 HLA-B*08:01 B2M MHCI RAKFKQLL BZLF1 EBV PMID:34811538 tetramer-sort yes amplicon-seq effector memory T cells T1D T1D_5 chip0423_582195 PBMC +6344 CAVSHFSGGYNKLIF TRAV1-1*01 TRAJ4*01 CASSFRGFGTEAFF TRBV28*01 TRBJ1-1*01 HLA-B*08:01 B2M MHCI MAALPRLIAF GAD2 HomoSapiens PMID:34811538 tetramer-sort yes amplicon-seq Naive T cells T1D T1D_4 chip0423_718322 PBMC +6346 CAVRILPNFGNEKLTS TRAV21*01 TRAJ48*01 CASTSTETVDGYTF TRBV5-4*01 TRBJ1-2*01 HLA-B*08:01 B2M MHCI QAKWRLQTL EBNA3A EBV PMID:34811538 tetramer-sort yes amplicon-seq effector memory T cells T1D T1D_6 chip0423_883307 PBMC +6347 CASSLLGGDSGNTIYF TRBV7-9*01 TRBJ1-3*01 HLA-B*08:01 B2M MHCI RAKFKQLL BZLF1 EBV PMID:34811538 tetramer-sort yes amplicon-seq central memory T cells T1D T1D_5 chip0423_155694 PBMC +6349 CAVSDGEGAQKLVF TRAV8-6*01 TRAJ54*01 CASSLTVLAGPNTEAFF TRBV7-3*01 TRBJ1-1*01 HLA-B*08:01 B2M MHCI RAKFKQLL BZLF1 EBV PMID:34811538 tetramer-sort yes amplicon-seq effector memory T cells T1D T1D_4 chip0423_139647 PBMC +6350 CASGGERGLKTQYF TRBV13*01 TRBJ2-5*01 HLA-B*08:01 B2M MHCI YAYAKWKL ZNT8 HomoSapiens PMID:34811538 tetramer-sort yes amplicon-seq transitional T cells between effector and memory populations T1D T1D_5 chip0423_413722 PBMC +6351 CGADATSGTYKYIF TRAV34*01 TRAJ40*01 CSVGSGEGYEQYF TRBV29-1*01 TRBJ2-7*01 HLA-B*08:01 B2M MHCI RAKFKQLL BZLF1 EBV PMID:34811538 tetramer-sort yes amplicon-seq effector memory T cells T1D T1D_4 chip0423_178609 PBMC +6352 CILPLAGGTSYGKLTF TRAV26-2*01 TRAJ52*01 CASSLGQAYEQYF TRBV7-8*01 TRBJ2-7*01 HLA-B*08:01 B2M MHCI FLRGRAYGL EBNA3A EBV PMID:34811538 tetramer-sort yes amplicon-seq effector memory T cells T1D T1D_4 chip0423_817751 PBMC +6353 CAAAETSYDKVIF TRAV13-1*01 TRAJ50*01 CASQLAGGTGELFF TRBV24-1*01 TRBJ2-2*01 HLA-B*08:01 B2M MHCI RAKFKQLL BZLF1 EBV PMID:34811538 tetramer-sort yes amplicon-seq effector memory T cells T1D T1D_5 chip0423_284147 PBMC +6354 CAVNSGNTPLVF TRAV1-2*01 TRAJ29*01 CASSLVYSPGDGYTF TRBV14*01 TRBJ1-2*01 HLA-B*08:01 B2M MHCI QAKWRLQTL EBNA3A EBV PMID:34811538 tetramer-sort yes amplicon-seq effector T cells T1D T1D_4 chip0423_576206 PBMC +6355 CAVGTIAct?SNTGKLPL TRAV8-3*01 TRAJ37*01 CASSLSGREGTQYF TRBV11-3*01 TRBJ2-3*01 HLA-B*08:01 B2M MHCI ELRSRYWAI NP InfluenzaA PMID:34811538 tetramer-sort yes amplicon-seq effector T cells T1D T1D_6 chip0423_351249 PBMC +6357 CSAGRDGTNEKLFF TRBV29-1*01 TRBJ1-4*01 HLA-A*02:01 B2M MHCI GLCTLVAML BLMF1 EBV PMID:34811538 tetramer-sort yes amplicon-seq effector memory T cells T1D T1D_6 chip0423_714716 PBMC +6358 CAAMETSYDKVIF TRAV13-1*01 TRAJ50*01 CATRDHRDGTGELFF TRBV24-1*01 TRBJ2-2*01 HLA-B*08:01 B2M MHCI RAKFKQLL BZLF1 EBV PMID:34811538 tetramer-sort yes amplicon-seq effector memory T cells T1D T1D_5 chip0423_59316 PBMC +6359 CAAAETSYDKVIF TRAV13-1*01 TRAJ50*01 CASSLAVGEGPQHF TRBV7-9*01 TRBJ1-5*01 HLA-B*08:01 B2M MHCI RAKFKQLL BZLF1 EBV PMID:34811538 tetramer-sort yes amplicon-seq effector memory T cells T1D T1D_4 chip0423_43190 PBMC +6360 CSAGRDGTNEKLFF TRBV29-1*01 TRBJ1-4*01 HLA-A*02:01 B2M MHCI GLCTLVAML BLMF1 EBV PMID:34811538 tetramer-sort yes amplicon-seq effector memory T cells T1D T1D_6 chip0423_288605 PBMC +6361 CSAGRDGTNEKLFF TRBV29-1*01 TRBJ1-4*01 HLA-A*02:01 B2M MHCI GLCTLVAML BLMF1 EBV PMID:34811538 tetramer-sort yes amplicon-seq effector memory T cells T1D T1D_6 chip0423_732201 PBMC +6362 CASSRLGEPTGELFF TRBV7-2*01 TRBJ2-2*01 HLA-B*08:01 B2M MHCI RAKFKQLL BZLF1 EBV PMID:34811538 tetramer-sort yes amplicon-seq effector memory T cells T1D T1D_5 chip0423_63493 PBMC +6363 CASSLTVLAGPNTEAFF TRBV7-3*01 TRBJ1-1*01 HLA-B*08:01 B2M MHCI RAKFKQLL BZLF1 EBV PMID:34811538 tetramer-sort yes amplicon-seq effector memory T cells T1D T1D_4 chip0423_44684 PBMC +6364 CASSLGQAYEQYF TRBV7-8*01 TRBJ2-7*01 HLA-B*08:01 B2M MHCI FLRGRAYGL EBNA3A EBV PMID:34811538 tetramer-sort yes amplicon-seq effector T cells T1D T1D_6 chip0423_123583 PBMC +6365 CAAAETSYDKVIF TRAV13-1*01 TRAJ50*01 CASQLAGGTGELFF TRBV24-1*01 TRBJ2-2*01 HLA-B*08:01 B2M MHCI RAKFKQLL BZLF1 EBV PMID:34811538 tetramer-sort yes amplicon-seq effector T cells T1D T1D_5 chip0423_368111 PBMC +6366 CILPLAGGTSYGKLTF TRAV26-2*01 TRAJ52*01 CASSLGQAYEQYF TRBV7-8*01 TRBJ2-7*01 HLA-B*08:01 B2M MHCI FLRGRAYGL EBNA3A EBV PMID:34811538 tetramer-sort yes amplicon-seq transitional T cells between effector and memory populations T1D T1D_4 chip0423_394939 PBMC +6367 CAGAEDSNYQLIW TRAV27*01 TRAJ33*01 HLA-B*08:01 B2M MHCI FLRGRAYGL EBNA3A EBV PMID:34811538 tetramer-sort yes amplicon-seq transitional T cells between effector and memory populations T1D T1D_4 chip0423_81797 PBMC +6368 CASSLTVLAGPNTEAFF TRBV7-3*01 TRBJ1-1*01 HLA-B*08:01 B2M MHCI RAKFKQLL BZLF1 EBV PMID:34811538 tetramer-sort yes amplicon-seq effector memory T cells T1D T1D_4 chip0423_390023 PBMC +6369 CASSSGQAYEQYF TRBV7-8*01 TRBJ2-7*01 HLA-B*08:01 B2M MHCI FLRGRAYGL EBNA3A EBV PMID:34811538 tetramer-sort yes amplicon-seq effector memory T cells healthy healthy_4 chip0423_76256 PBMC +6370 CASSLGQAYEQYF TRBV7-8*01 TRBJ2-7*01 HLA-B*08:01 B2M MHCI FLRGRAYGL EBNA3A EBV PMID:34811538 tetramer-sort yes amplicon-seq effector memory T cells T1D T1D_6 chip0423_477175 PBMC +6371 CAATRVQAGTALIF TRAV13-1*01 TRAJ15*01 CASSFSAPNTGELFV TRBV7-6*01 TRBJ2-2*01 HLA-B*08:01 B2M MHCI HPRYFNQL GAD2 HomoSapiens PMID:34811538 tetramer-sort yes amplicon-seq Naive T cells T1D T1D_5 chip0423_36714 PBMC +6372 CASSQVNNPGDGYTF TRBV14*01 TRBJ1-2*01 HLA-B*08:01 B2M MHCI QAKWRLQTL EBNA3A EBV PMID:34811538 tetramer-sort yes amplicon-seq effector memory T cells T1D T1D_4 chip0423_301381 PBMC +6373 CAVNSFGGGYNKLIF TRAV8-1*01 TRAJ4*01 CASSPPNGRAEQYF TRBV5-6*01 TRBJ2-7*01 HLA-A*02:01 B2M MHCI YLLEMLWRL LMP1 EBV PMID:34811538 tetramer-sort yes amplicon-seq central memory T cells T1D T1D_4 chip0423_191762 PBMC +6374 CASSELGATQYF TRBV25-1*01 TRBJ2-3*01 HLA-A*02:01 B2M MHCI GILGFVFTL M1 InfluenzaA PMID:34811538 tetramer-sort yes amplicon-seq central memory T cells healthy healthy_4 chip0423_107284 PBMC +6375 CASSGEEGRENEQFF TRBV6-2*01,TRBV6-3*01 TRBJ2-1*01 HLA-A*02:01 B2M MHCI LLFNILGGWV NS4B HCV PMID:34811538 tetramer-sort yes amplicon-seq transitional T cells between effector and memory populations healthy healthy_4 chip0423_869256 PBMC +6376 CASSLRGSGGTEAFF TRBV13*01 TRBJ1-1*01 HLA-A*01:01 B2M MHCI CTELKLSDY NP InfluenzaA PMID:34811538 tetramer-sort yes amplicon-seq effector memory T cells T1D T1D_4 chip0423_3370 PBMC +6377 CAVRDTTWDDKIIF TRAV3*01 TRAJ30*01 CASSLGGGEGASEQFF TRBV7-6*01 TRBJ2-1*01 HLA-B*08:01 B2M MHCI FLRGRAYGL EBNA3A EBV PMID:34811538 tetramer-sort yes amplicon-seq effector memory T cells T1D T1D_4 chip0423_852233 PBMC +6378 CLLEANtg??caGYALNF TRAV40*01 TRAJ41*01 CASSLGQAYEQYF TRBV7-8*01 TRBJ2-7*01 HLA-B*08:01 B2M MHCI FLRGRAYGL EBNA3A EBV PMID:34811538 tetramer-sort yes amplicon-seq effector memory T cells T1D T1D_4 chip0423_429933 PBMC +6379 CAARETSYDKVIF TRAV13-1*01 TRAJ50*01 CASSRIGQGVGETQYF TRBV7-9*01 TRBJ2-5*01 HLA-B*08:01 B2M MHCI RAKFKQLL BZLF1 EBV PMID:34811538 tetramer-sort yes amplicon-seq effector T cells T1D T1D_5 chip0423_736615 PBMC +6380 CASSQVNNPGDGYTF TRBV14*01 TRBJ1-2*01 HLA-B*08:01 B2M MHCI QAKWRLQTL EBNA3A EBV PMID:34811538 tetramer-sort yes amplicon-seq effector memory T cells T1D T1D_4 chip0423_578446 PBMC +6381 CILPLAGGTSYGKLTF TRAV26-2*01 TRAJ52*01 CASSPPGRNEKLFF TRBV12-3*01,TRBV12-4*01 TRBJ1-4*01 HLA-B*08:01 B2M MHCI RAKFKQLL BZLF1 EBV PMID:34811538 tetramer-sort yes amplicon-seq effector memory T cells T1D T1D_5 chip0423_557005 PBMC +6382 CAGPSWTc?gGRKALAF TRAV25*01 TRAJ5*01 HLA-B*08:01 B2M MHCI RAKFKQLL BZLF1 EBV PMID:34811538 tetramer-sort yes amplicon-seq effector memory T cells T1D T1D_4 chip0423_832546 PBMC +6383 CILPLAGGTSYGKLTF TRAV26-2*01 TRAJ52*01 CASSLGQAYEQYF TRBV7-8*01 TRBJ2-7*01 HLA-B*08:01 B2M MHCI FLRGRAYGL EBNA3A EBV PMID:34811538 tetramer-sort yes amplicon-seq effector memory T cells T1D T1D_4 chip0423_369171 PBMC +6384 CAVCGSAWGGEVIC TRAV3*01 TRAJ30*01 CASSLGGGEGASEQFF TRBV7-6*01 TRBJ2-1*01 HLA-B*08:01 B2M MHCI FLRGRAYGL EBNA3A EBV PMID:34811538 tetramer-sort yes amplicon-seq effector memory T cells T1D T1D_4 chip0423_344373 PBMC +6385 CAVILNSGNTPLVF TRAV12-2*01 TRAJ29*01 CAIGRPPDTQYF TRBV10-3*01 TRBJ2-3*01 HLA-A*02:01 B2M MHCI TLLANVTAV VP6 RotavirusA PMID:34811538 tetramer-sort yes amplicon-seq transitional T cells between effector and memory populations T1D T1D_6 chip0423_835638 PBMC +6386 CAMILSNFGNEKLTF TRAV12-3*01 TRAJ48*01 CASSPFMNTEAFF TRBV28*01 TRBJ1-1*01 HLA-A*02:01 B2M MHCI LLAGIGTVPI PGT HomoSapiens PMID:34811538 tetramer-sort yes amplicon-seq Naive T cells T1D T1D_4 chip0423_681153 PBMC +6387 CAMREGEAGGFKTIF TRAV14/DV4*01 TRAJ9*01 CASSLGGTGFQPQHF TRBV7-9*01 TRBJ1-5*01 HLA-B*08:01 B2M MHCI RAKFKQLL BZLF1 EBV PMID:34811538 tetramer-sort yes amplicon-seq effector T cells T1D T1D_5 chip0423_748332 PBMC +6388 CSAGRDGTNEKLFF TRBV29-1*01 TRBJ1-4*01 HLA-A*02:01 B2M MHCI GLCTLVAML BLMF1 EBV PMID:34811538 tetramer-sort yes amplicon-seq effector memory T cells T1D T1D_6 chip0423_184753 PBMC +6389 CLVGDIag??gaTYKYIF TRAV4*01 TRAJ40*01 HLA-B*08:01 B2M MHCI RAKFKQLL BZLF1 EBV PMID:34811538 tetramer-sort yes amplicon-seq effector memory T cells T1D T1D_4 chip0423_420797 PBMC +6390 CASSSLGQRETQYF TRBV7-9*01 TRBJ2-5*01 HLA-B*08:01 B2M MHCI RAKFKQLL BZLF1 EBV PMID:34811538 tetramer-sort yes amplicon-seq effector memory T cells T1D T1D_5 chip0423_587708 PBMC +6391 CGTEPDNNAGNMLTF TRAV30*01 TRAJ39*01 CASSIYSINEQFF TRBV19*01 TRBJ2-1*01 HLA-A*02:01 B2M MHCI GILGFVFTL M1 InfluenzaA PMID:34811538 tetramer-sort yes amplicon-seq transitional T cells between effector and memory populations T1D T1D_6 chip0423_477267 PBMC +6392 CASSQVNNPGDGYTF TRBV14*01 TRBJ1-2*01 HLA-B*08:01 B2M MHCI QAKWRLQTL EBNA3A EBV PMID:34811538 tetramer-sort yes amplicon-seq effector memory T cells T1D T1D_4 chip0423_78484 PBMC +6393 CSVGTGGTNEKLFF TRBV29-1*01 TRBJ1-4*01 HLA-A*02:01 B2M MHCI GLCTLVAML BLMF1 EBV PMID:34811538 tetramer-sort yes amplicon-seq effector memory T cells T1D T1D_6 chip0423_22692 PBMC +6394 CASSLAVGEGPQHF TRBV7-9*01 TRBJ1-5*01 HLA-B*08:01 B2M MHCI RAKFKQLL BZLF1 EBV PMID:34811538 tetramer-sort yes amplicon-seq effector memory T cells T1D T1D_4 chip0423_598567 PBMC +6395 CILPLAGGTSYGKLTF TRAV26-2*01 TRAJ52*01 CASSLGQAYEQYF TRBV7-8*01 TRBJ2-7*01 HLA-B*08:01 B2M MHCI FLRGRAYGL EBNA3A EBV PMID:34811538 tetramer-sort yes amplicon-seq effector memory T cells T1D T1D_6 chip0423_550486 PBMC +6396 CASRVRGAPYEQYF TRBV9*01 TRBJ2-7*01 HLA-B*08:01 B2M MHCI FLRGRAYGL EBNA3A EBV PMID:34811538 tetramer-sort yes amplicon-seq effector T cells T1D T1D_6 chip0423_340390 PBMC +6397 CAAAETSYDKVIF TRAV13-1*01 TRAJ50*01 CASQLAGGTGELFF TRBV24-1*01 TRBJ2-2*01 HLA-B*08:01 B2M MHCI RAKFKQLL BZLF1 EBV PMID:34811538 tetramer-sort yes amplicon-seq effector T cells T1D T1D_5 chip0423_268295 PBMC +6398 CASSIRSTGELFF TRBV19*01 TRBJ2-2*01 HLA-A*02:01 B2M MHCI GILGFVFTL M1 InfluenzaA PMID:34811538 tetramer-sort yes amplicon-seq transitional T cells between effector and memory populations healthy healthy_3 chip0423_555546 PBMC +6399 CASSPLGSKAGELFF TRBV7-9*01 TRBJ2-2*01 HLA-B*08:01 B2M MHCI RAKFKQLL BZLF1 EBV PMID:34811538 tetramer-sort yes amplicon-seq effector memory T cells T1D T1D_5 chip0423_787630 PBMC +6400 CAESGTDKLIF TRAV13-2*01 TRAJ34*01 CASSLVGAGEQYF TRBV7-9*01 TRBJ2-7*01 HLA-B*08:01 B2M MHCI HLKRNIVV GFAP HomoSapiens PMID:34811538 tetramer-sort yes amplicon-seq Naive T cells T1D T1D_5 chip0423_789387 PBMC +6401 CASSPLSMGDYGYTF TRBV4-2*01 TRBJ1-2*01 HLA-A*01:01 B2M MHCI LTSLTILQLY G6PC2 HomoSapiens PMID:34811538 tetramer-sort yes amplicon-seq Naive T cells T1D T1D_5 chip0423_518241 PBMC +6403 CAMSGGKLIF TRAV12-3*01 TRAJ37*01 CSASQTGATYEQYF TRBV20-1*01 TRBJ2-7*01 HLA-A*02:01 B2M MHCI VIVMLTPLV PTPRN HomoSapiens PMID:34811538 tetramer-sort yes amplicon-seq Naive T cells T1D T1D_6 chip0423_621272 PBMC +6404 CAASKIEga?GGADGLTF TRAV23/DV6*01 TRAJ45*01 CASRVDR??gVTYEQYF TRBV2*01 TRBJ2-7*01 HLA-B*08:01 B2M MHCI FLRGRAYGL EBNA3A EBV PMID:34811538 tetramer-sort yes amplicon-seq effector memory T cells T1D T1D_6 chip0423_785487 PBMC +6405 CSARDPRADAAV TRBV20-1*01 TRBJ1-2*01 HLA-A*02:01 B2M MHCI LLAGIGTVPI PGT HomoSapiens PMID:34811538 tetramer-sort yes amplicon-seq Naive T cells T1D T1D_4 chip0423_118075 PBMC +6406 CAVPAGgc?RAAPFLF TRAV8-3*01 TRAJ30*01 CASSQVGVPPGYTF TRBV28*01 TRBJ1-2*01 HLA-A*02:01 B2M MHCI LLAGIGTVPI PGT HomoSapiens PMID:34811538 tetramer-sort yes amplicon-seq Naive T cells T1D T1D_6 chip0423_564357 PBMC +6407 CASSLGQAYEQYF TRBV7-8*01 TRBJ2-7*01 HLA-B*08:01 B2M MHCI FLRGRAYGL EBNA3A EBV PMID:34811538 tetramer-sort yes amplicon-seq effector memory T cells T1D T1D_6 chip0423_449116 PBMC +6408 CSVSAGEDGEQFF TRBV29-1*01 TRBJ2-1*01 HLA-B*08:01 B2M MHCI RAKFKQLL BZLF1 EBV PMID:34811538 tetramer-sort yes amplicon-seq effector memory T cells T1D T1D_5 chip0423_769668 PBMC +6409 CASSQLMGNTIYF TRBV14*01 TRBJ1-3*01 HLA-A*02:01 B2M MHCI IQATVMIIV ZNT8 HomoSapiens PMID:34811538 tetramer-sort yes amplicon-seq Naive T cells T1D T1D_6 chip0423_485878 PBMC +6410 CAYGQNFVF TRAV8-3*01 TRAJ26*01 CASSADSDYGYTF TRBV9*01 TRBJ1-2*01 HLA-A*02:01 B2M MHCI YLLEMLWRL LMP1 EBV PMID:34811538 tetramer-sort yes amplicon-seq central memory T cells T1D T1D_4 chip0423_485416 PBMC +6411 FTDREGGGADGLTF TRAV26-1*01 TRAJ45*01 CASSLAVGEGPQHF TRBV7-9*01 TRBJ1-5*01 HLA-B*08:01 B2M MHCI RAKFKQLL BZLF1 EBV PMID:34811538 tetramer-sort yes amplicon-seq effector memory T cells T1D T1D_4 chip0423_460136 PBMC +6412 CASSLAGREGTQYF TRBV11-3*01 TRBJ2-3*01 HLA-B*08:01 B2M MHCI ELRSRYWAI NP InfluenzaA PMID:34811538 tetramer-sort yes amplicon-seq transitional T cells between effector and memory populations T1D T1D_6 chip0423_258668 PBMC +6413 CASSMDGNTEAFF TRBV19*01 TRBJ1-1*01 HLA-A*01:01 B2M MHCI GSHLVEALY INS HomoSapiens PMID:34811538 tetramer-sort yes amplicon-seq Naive T cells T1D T1D_5 chip0423_122523 PBMC +6414 CILPLAGGTSYGKLTF TRAV26-2*01 TRAJ52*01 CASSLGQAYEQYF TRBV7-8*01 TRBJ2-7*01 HLA-B*08:01 B2M MHCI FLRGRAYGL EBNA3A EBV PMID:34811538 tetramer-sort yes amplicon-seq effector memory T cells T1D T1D_6 chip0423_14618 PBMC +6415 CASGPDISYSYEQYF TRBV12-5*01 TRBJ2-7*01 HLA-B*08:01 B2M MHCI RAKFKQLL BZLF1 EBV PMID:34811538 tetramer-sort yes amplicon-seq effector T cells T1D T1D_5 chip0423_656661 PBMC +6416 CAMGGDYQLIW TRAV12-3*01 TRAJ33*01 CASSLIAGELFF TRBV7-3*01 TRBJ2-2*01 HLA-A*02:01 B2M MHCI LLAGIGTVPI PGT HomoSapiens PMID:34811538 tetramer-sort yes amplicon-seq Naive T cells T1D T1D_6 chip0423_834059 PBMC +6417 CASSFLRGSNQPQHF TRBV28*01 TRBJ1-5*01 HLA-A*02:01 B2M MHCI YVLDHLIVV BRLF1 EBV PMID:34811538 tetramer-sort yes amplicon-seq effector memory T cells T1D T1D_4 chip0423_314263 PBMC +6418 CIAVTStc??ccGNPFSF TRAV26-1*01 TRAJ49*01 CSAGRDGTNEKLFF TRBV29-1*01 TRBJ1-4*01 HLA-A*02:01 B2M MHCI GLCTLVAML BLMF1 EBV PMID:34811538 tetramer-sort yes amplicon-seq effector T cells T1D T1D_6 chip0423_346882 PBMC +6419 CAVGPYSGGGADGLTF TRAV12-2*01 TRAJ45*01 HLA-A*02:01 B2M MHCI ALGIGILTV MART1 HomoSapiens PMID:34811538 tetramer-sort yes amplicon-seq Naive T cells T1D T1D_6 chip0423_195516 PBMC +6420 CIVRVVCac?GTASHLTF TRAV26-1*01 TRAJ44*01 CASSLAVGEGPQHF TRBV7-9*01 TRBJ1-5*01 HLA-B*08:01 B2M MHCI RAKFKQLL BZLF1 EBV PMID:34811538 tetramer-sort yes amplicon-seq effector memory T cells T1D T1D_4 chip0423_59801 PBMC +6421 CVVISNSGGYQKVTF TRAV12-1*01 TRAJ13*01 CASSGRADTGELLF TRBV5-1*01 TRBJ2-2*01 HLA-A*02:01 B2M MHCI CINGVCWTV NS3 HCV PMID:34811538 tetramer-sort yes amplicon-seq Naive T cells T1D T1D_6 chip0423_794871 PBMC +6422 CASSWLGDRYNSPLHF TRBV7-9*01 TRBJ1-6*01 HLA-B*08:01 B2M MHCI RAKFKQLL BZLF1 EBV PMID:34811538 tetramer-sort yes amplicon-seq effector memory T cells T1D T1D_5 chip0423_753272 PBMC +6424 CILPLAGGTSYGKLTF TRAV26-2*01 TRAJ52*01 HLA-B*08:01 B2M MHCI FLRGRAYGL EBNA3A EBV PMID:34811538 tetramer-sort yes amplicon-seq effector T cells T1D T1D_6 chip0423_390088 PBMC +6425 CAAMETSYDKVIF TRAV13-1*01 TRAJ50*01 CATSDLGGKEAFF TRBV24-1*01 TRBJ1-1*01 HLA-B*08:01 B2M MHCI RAKFKQLL BZLF1 EBV PMID:34811538 tetramer-sort yes amplicon-seq transitional T cells between effector and memory populations T1D T1D_4 chip0423_130826 PBMC +6426 CIPPLAGGAGYGKLTF TRAV26-2*01 TRAJ52*01 CASSLGQAYEQYF TRBV7-8*01 TRBJ2-7*01 HLA-B*08:01 B2M MHCI FLRGRAYGL EBNA3A EBV PMID:34811538 tetramer-sort yes amplicon-seq central memory T cells T1D T1D_6 chip0423_574311 PBMC +6427 CAVILFVLMDSSYKLIF TRAV12-2*01 TRAJ12*01 CASSLAASAGGPVSGEQYF TRBV7-8*01 TRBJ2-7*01 HLA-B*08:01 B2M MHCI FLRGRAYGL EBNA3A EBV PMID:34811538 tetramer-sort yes amplicon-seq transitional T cells between effector and memory populations T1D T1D_4 chip0423_474893 PBMC +6428 CAAAYGGSQGNLVF TRAV25*01 TRAJ42*01 CASSTRSTDTQYF TRBV19*01 TRBJ2-3*01 HLA-A*02:01 B2M MHCI GILGFVFTL M1 InfluenzaA PMID:34811538 tetramer-sort yes amplicon-seq transitional T cells between effector and memory populations T1D T1D_4 chip0423_257175 PBMC +6429 CAASEDARLMF TRAV13-1*01 TRAJ31*01 CASSFPFQSYGYTF TRBV7-9*01 TRBJ1-2*01 HLA-B*08:01 B2M MHCI RAKFKQLL BZLF1 EBV PMID:34811538 tetramer-sort yes amplicon-seq effector memory T cells T1D T1D_4 chip0423_251020 PBMC +6430 CARAGAGSYQLTF TRAV17*01 TRAJ28*01 CAISPEDRVQETQYF TRBV10-3*01 TRBJ2-5*01 HLA-A*02:01 B2M MHCI VVTGVLVYL ZNT8 HomoSapiens PMID:34811538 tetramer-sort yes amplicon-seq Naive T cells T1D T1D_6 chip0423_165727 PBMC +6431 CAAQETSYDKVIF TRAV13-1*01 TRAJ50*01 CASTQVDRPNYGYTF TRBV7-9*01 TRBJ1-2*01 HLA-B*08:01 B2M MHCI RAKFKQLL BZLF1 EBV PMID:34811538 tetramer-sort yes amplicon-seq effector T cells T1D T1D_5 chip0423_590618 PBMC +6432 CAGGALNDYKLNF TRAV8-3*01 TRAJ20*01 CATRGQGYEQYF TRBV30*01 TRBJ2-7*01 HLA-A*02:01 B2M MHCI SLISGMWLL VP2 RotavirusA PMID:34811538 tetramer-sort yes amplicon-seq Naive T cells T1D T1D_6 chip0423_200385 PBMC +6433 CAGPSGGGKLIF TRAV12-2*01 TRAJ23*01 CASSISALGQPQHF TRBV19*01 TRBJ1-5*01 HLA-A*02:01 B2M MHCI LLAGIGTVPI PGT HomoSapiens PMID:34811538 tetramer-sort yes amplicon-seq effector memory T cells healthy healthy_3 chip0423_615331 PBMC +6434 CALTTRat?NTAPLFF TRAV19*01 TRAJ34*01 CASSGPKLFANTGELFF TRBV11-2*01 TRBJ2-2*01 HLA-B*08:01 B2M MHCI RAKFKQLL BZLF1 EBV PMID:34811538 tetramer-sort yes amplicon-seq effector memory T cells T1D T1D_5 chip0423_752666 PBMC +6435 LCRGGNct??ccYDKVIF TRAV13-1*01 TRAJ50*01 CASQLAGGTGELFF TRBV24-1*01 TRBJ2-2*01 HLA-B*08:01 B2M MHCI RAKFKQLL BZLF1 EBV PMID:34811538 tetramer-sort yes amplicon-seq effector T cells T1D T1D_5 chip0423_227752 PBMC +6436 *VETLQNYNQAGRPIF TRAV12-1*01 TRAJ23*01 CASEDRGGYEQYF TRBV19*01 TRBJ2-7*01 HLA-A*01:01 B2M MHCI CTELKLSDY NP InfluenzaA PMID:34811538 tetramer-sort yes amplicon-seq Naive T cells T1D T1D_5 chip0423_594430 PBMC +6438 CAVNSGNTPLVF TRAV1-2*01 TRAJ29*01 CASSQVNNPGDGYTF TRBV14*01 TRBJ1-2*01 HLA-B*08:01 B2M MHCI QAKWRLQTL EBNA3A EBV PMID:34811538 tetramer-sort yes amplicon-seq effector memory T cells T1D T1D_4 chip0423_610695 PBMC +6439 CAASEHNQFYF TRAV13-1*01 TRAJ49*01 CASSFPSLHTQYF TRBV12-3*01,TRBV12-4*01 TRBJ2-3*01 HLA-B*08:01 B2M MHCI RAKFKQLL BZLF1 EBV PMID:34811538 tetramer-sort yes amplicon-seq effector T cells T1D T1D_5 chip0423_195711 PBMC +6440 CAVSPRFSDGQKLLF TRAV3*01 TRAJ16*01 CASSQDRTEAHYEQYF TRBV4-1*01 TRBJ2-7*01 HLA-B*08:01 B2M MHCI QAKWRLQTL EBNA3A EBV PMID:34811538 tetramer-sort yes amplicon-seq Naive T cells T1D T1D_6 chip0423_364228 PBMC +6441 CASSLHRTLLSGNTIYF TRBV28*01 TRBJ1-3*01 HLA-B*08:01 B2M MHCI QAKWRLQTL EBNA3A EBV PMID:34811538 tetramer-sort yes amplicon-seq effector memory T cells T1D T1D_4 chip0423_96610 PBMC +6442 CATLSVSIGDHSKLKF TRAV17*01 TRAJ56*01 CASSMMGSGYNEAVL TRBV19*01 TRBJ2-1*01 HLA-A*02:01 B2M MHCI GILGFVFTL M1 InfluenzaA PMID:34811538 tetramer-sort yes amplicon-seq central memory T cells healthy healthy_4 chip0423_349106 PBMC +6443 CAMSEDGF TRAV12-3*01 TRAJ37*01,TRAJ11*01 CASSPGPNTEAFF TRBV4-2*01 TRBJ1-1*01 HLA-B*08:01 B2M MHCI RAKFKQLL BZLF1 EBV PMID:34811538 tetramer-sort yes amplicon-seq effector memory T cells T1D T1D_4 chip0423_265867 PBMC +6444 CASSGSNRETQHF TRBV28*01 TRBJ1-5*01 HLA-A*01:01 B2M MHCI VTDAAHLLI ZNT8 HomoSapiens PMID:34811538 tetramer-sort yes amplicon-seq Naive T cells T1D T1D_6 chip0423_545023 PBMC +6445 CAENARYSGAGSYQLTF TRAV13-2*01 TRAJ28*01 CADGLARGLPYEQCF TRBV5-1*01 TRBJ2-7*01 HLA-B*08:01 B2M MHCI QAKWRLQTL EBNA3A EBV PMID:34811538 tetramer-sort yes amplicon-seq effector memory T cells T1D T1D_4 chip0423_441641 PBMC +6446 CASQLAGGTGELFF TRBV24-1*01 TRBJ2-2*01 HLA-B*08:01 B2M MHCI RAKFKQLL BZLF1 EBV PMID:34811538 tetramer-sort yes amplicon-seq effector memory T cells T1D T1D_5 chip0423_52750 PBMC +6447 CSVGTGDTNEKLSF TRBV29-1*01 TRBJ1-4*01 HLA-B*08:01 B2M MHCI QAKWRLQTL EBNA3A EBV PMID:34811538 tetramer-sort yes amplicon-seq effector memory T cells T1D T1D_4 chip0423_777745 PBMC +6448 CAAAETSYDKVIF TRAV13-1*01 TRAJ50*01 CASQLAGGTGELFF TRBV24-1*01 TRBJ2-2*01 HLA-B*08:01 B2M MHCI RAKFKQLL BZLF1 EBV PMID:34811538 tetramer-sort yes amplicon-seq transitional T cells between effector and memory populations T1D T1D_5 chip0423_38823 PBMC +6449 CAVSATTWAAKIIF TRAV3*01 TRAJ30*01 CASSLGGGEGASEQFF TRBV7-6*01 TRBJ2-1*01 HLA-B*08:01 B2M MHCI FLRGRAYGL EBNA3A EBV PMID:34811538 tetramer-sort yes amplicon-seq effector memory T cells T1D T1D_4 chip0423_787732 PBMC +6450 CSVWGETQYF TRBV29-1*01 TRBJ2-5*01 HLA-B*08:01 B2M MHCI QAKWRLQTL EBNA3A EBV PMID:34811538 tetramer-sort yes amplicon-seq central memory T cells T1D T1D_5 chip0423_677112 PBMC +6451 CILPLAGGTSYGKLTF TRAV26-2*01 TRAJ52*01 CASSLGQAYEQYF TRBV7-8*01 TRBJ2-7*01 HLA-B*08:01 B2M MHCI FLRGRAYGL EBNA3A EBV PMID:34811538 tetramer-sort yes amplicon-seq effector memory T cells T1D T1D_6 chip0423_88608 PBMC +6452 CAARETSYDKVIF TRAV13-1*01 TRAJ50*01 CASSPLGTADSGNTIYF TRBV11-1*01 TRBJ1-3*01 HLA-B*08:01 B2M MHCI RAKFKQLL BZLF1 EBV PMID:34811538 tetramer-sort yes amplicon-seq effector T cells T1D T1D_5 chip0423_582757 PBMC +6453 CASSLAVGEGPQHF TRBV7-9*01 TRBJ1-5*01 HLA-B*08:01 B2M MHCI RAKFKQLL BZLF1 EBV PMID:34811538 tetramer-sort yes amplicon-seq effector T cells T1D T1D_4 chip0423_134207 PBMC +6454 CIVREGGGADGLTF TRAV26-1*01 TRAJ45*01 CASSLAVGEGPQHF TRBV7-9*01 TRBJ1-5*01 HLA-B*08:01 B2M MHCI RAKFKQLL BZLF1 EBV PMID:34811538 tetramer-sort yes amplicon-seq effector T cells T1D T1D_4 chip0423_7863 PBMC +6455 CALVNYGGSQGNLIF TRAV19*01 TRAJ42*01 CAVWRDGAYEQYF TRBV28*01 TRBJ2-7*01 HLA-A*02:01 B2M MHCI YLLEMLWRL LMP1 EBV PMID:34811538 tetramer-sort yes amplicon-seq effector memory T cells T1D T1D_4 chip0423_837707 PBMC +6456 CASSLAVGEGPQHF TRBV7-9*01 TRBJ1-5*01 HLA-B*08:01 B2M MHCI RAKFKQLL BZLF1 EBV PMID:34811538 tetramer-sort yes amplicon-seq effector memory T cells T1D T1D_4 chip0423_156154 PBMC +6457 CVAKETSYDKVIF TRAV12-1*01 TRAJ50*01 CASSALGGRGDTQYF TRBV7-9*01 TRBJ2-3*01 HLA-B*08:01 B2M MHCI RAKFKQLL BZLF1 EBV PMID:34811538 tetramer-sort yes amplicon-seq effector memory T cells T1D T1D_5 chip0423_18046 PBMC +6458 CASSSLGQKNTEAFF TRAV36/DV7*01 TRAJ40*01 CASSSLGQKNTEAFF TRBV7-9*01 TRBJ1-1*01 HLA-B*08:01 B2M MHCI RAKFKQLL BZLF1 EBV PMID:34811538 tetramer-sort yes amplicon-seq effector memory T cells T1D T1D_5 chip0423_1023 PBMC +6459 CATEGASGYSTLTF TRAV17*01 TRAJ11*01 HLA-A*02:01 B2M MHCI FLYALALLL LMP2 EBV PMID:34811538 tetramer-sort yes amplicon-seq effector memory T cells T1D T1D_6 chip0423_664017 PBMC +6461 CAPSLNSGGYQKVTF TRAV2*01 TRAJ13*01 CASSVVGGDYGYTF TRBV2*01 TRBJ1-2*01 HLA-B*08:01 B2M MHCI FLRGRAYGL EBNA3A EBV PMID:34811538 tetramer-sort yes amplicon-seq effector memory T cells T1D T1D_4 chip0423_245218 PBMC +6462 CAASETSYDQVIS TRAV13-1*01 TRAJ50*01 CASSLGDRGEGYTF TRBV12-3*01,TRBV12-4*01 TRBJ1-2*01 HLA-B*08:01 B2M MHCI RAKFKQLL BZLF1 EBV PMID:34811538 tetramer-sort yes amplicon-seq effector memory T cells T1D T1D_5 chip0423_751905 PBMC +6463 CILPLAGGTSYGKLTF TRAV26-2*01 TRAJ52*01 CASSLGQAYEQYF TRBV7-8*01 TRBJ2-7*01 HLA-B*08:01 B2M MHCI FLRGRAYGL EBNA3A EBV PMID:34811538 tetramer-sort yes amplicon-seq effector memory T cells T1D T1D_6 chip0423_484701 PBMC +6464 CAEMETSYDKVIF TRAV13-2*01 TRAJ50*01 CASSSLSGGAGNEQFF TRBV7-9*01 TRBJ2-1*01 HLA-B*08:01 B2M MHCI RAKFKQLL BZLF1 EBV PMID:34811538 tetramer-sort yes amplicon-seq effector memory T cells T1D T1D_5 chip0423_867772 PBMC +6465 CASSLLGRSNTEAFF TRBV7-9*01 TRBJ1-1*01 HLA-B*08:01 B2M MHCI RAKFKQLL BZLF1 EBV PMID:34811538 tetramer-sort yes amplicon-seq effector T cells T1D T1D_5 chip0423_577449 PBMC +6466 CILPLAGGTSYGKLTF TRAV26-2*01 TRAJ52*01 CASSLGQAYEQYF TRBV7-8*01 TRBJ2-7*01 HLA-B*08:01 B2M MHCI FLRGRAYGL EBNA3A EBV PMID:34811538 tetramer-sort yes amplicon-seq effector T cells T1D T1D_6 chip0423_370560 PBMC +6467 CAVATFSSGSARQLTF TRAV12-2*01 TRAJ22*01 CASSERGAFTDTQYF TRBV5-1*01 TRBJ2-3*01 HLA-B*08:01 B2M MHCI YAKWKLCSA ZNT8 HomoSapiens PMID:34811538 tetramer-sort yes amplicon-seq Naive T cells T1D T1D_5 chip0423_126003 PBMC +6468 CASSLGQAYEQYF TRBV7-8*01 TRBJ2-7*01 HLA-B*08:01 B2M MHCI FLRGRAYGL EBNA3A EBV PMID:34811538 tetramer-sort yes amplicon-seq effector memory T cells T1D T1D_6 chip0423_656550 PBMC +6469 CILPLAGGTSYGKLTF TRAV26-2*01 TRAJ52*01 CASSLGQAYEQYF TRBV7-8*01 TRBJ2-7*01 HLA-B*08:01 B2M MHCI FLRGRAYGL EBNA3A EBV PMID:34811538 tetramer-sort yes amplicon-seq effector memory T cells T1D T1D_4 chip0423_245469 PBMC +6470 CAVNVDTGNQFYF TRAV8-1*01 TRAJ49*01 CSGLAGAGEQFF TRBV29-1*01 TRBJ2-1*01 HLA-B*08:01 B2M MHCI RAKFKQLL BZLF1 EBV PMID:34811538 tetramer-sort yes amplicon-seq transitional T cells between effector and memory populations T1D T1D_4 chip0423_182245 PBMC +6471 CASSFQGGNYGYTF TRBV6-5*01 TRBJ1-2*01 HLA-A*02:01 B2M MHCI FLYALALLL LMP2 EBV PMID:34811538 tetramer-sort yes amplicon-seq transitional T cells between effector and memory populations T1D T1D_6 chip0423_495161 PBMC +6472 CAASTLAga?GGADGLTF TRAV23/DV6*01 TRAJ45*01 CASSLGQAYEQYF TRBV7-8*01 TRBJ2-7*01 HLA-B*08:01 B2M MHCI FLRGRAYGL EBNA3A EBV PMID:34811538 tetramer-sort yes amplicon-seq effector T cells T1D T1D_6 chip0423_818671 PBMC +6474 CAMSISNFGNEKLTF TRAV12-3*01 TRAJ48*01 CAISDARTGERTDQTYTEAFF TRBV10-3*01 TRBJ1-1*01 HLA-A*02:01 B2M MHCI LLAGIGTVPI PGT HomoSapiens PMID:34811538 tetramer-sort yes amplicon-seq Naive T cells T1D T1D_6 chip0423_126711 PBMC +6475 CILPLAGGTSYGKLTF TRAV26-2*01 TRAJ52*01 CASSLGQAYEQYF TRBV7-8*01 TRBJ2-7*01 HLA-B*08:01 B2M MHCI FLRGRAYGL EBNA3A EBV PMID:34811538 tetramer-sort yes amplicon-seq effector memory T cells T1D T1D_6 chip0423_748179 PBMC +6476 CAMRVGK??gGYQKVTF TRAV14/DV4*01 TRAJ13*01 HLA-B*08:01 B2M MHCI RAKFKQLL BZLF1 EBV PMID:34811538 tetramer-sort yes amplicon-seq effector T cells T1D T1D_5 chip0423_623427 PBMC +6477 CALCVGASRASNLIV TRAV14/DV4*01 TRAJ3*01 CSVGTSYGYTF TRBV29-1*01 TRBJ1-2*01 HLA-B*08:01 B2M MHCI RAKFKQLL BZLF1 EBV PMID:34811538 tetramer-sort yes amplicon-seq effector T cells T1D T1D_5 chip0423_349310 PBMC +6478 CASQGGSQGNLIF TRAV20*01 TRAJ42*01 CASGLGGQTATQYF TRBV13*01 TRBJ2-5*01 HLA-A*02:01 B2M MHCI TLLANVTAV VP6 RotavirusA PMID:34811538 tetramer-sort yes amplicon-seq transitional T cells between effector and memory populations T1D T1D_6 chip0423_881423 PBMC +6479 CASSLTVLAGPNTEAFF TRBV7-3*01 TRBJ1-1*01 HLA-B*08:01 B2M MHCI RAKFKQLL BZLF1 EBV PMID:34811538 tetramer-sort yes amplicon-seq effector memory T cells T1D T1D_4 chip0423_765494 PBMC +6480 CASRALSGGASEQFF TRBV6-1*01 TRBJ2-1*01 HLA-A*02:01 B2M MHCI YVLDHLIVV BRLF1 EBV PMID:34811538 tetramer-sort yes amplicon-seq effector memory T cells T1D T1D_4 chip0423_563259 PBMC +6481 CSVAVIDTLVF TRAV8-1*01 TRAJ34*01 HLA-A*02:01 B2M MHCI YVLDHLIVV BRLF1 EBV PMID:34811538 tetramer-sort yes amplicon-seq effector T cells T1D T1D_4 chip0423_398269 PBMC +6482 CASSLAVGEGPQHF TRBV7-9*01 TRBJ1-5*01 HLA-B*08:01 B2M MHCI RAKFKQLL BZLF1 EBV PMID:34811538 tetramer-sort yes amplicon-seq effector memory T cells T1D T1D_4 chip0423_523331 PBMC +6483 CAAQETSYDKVIF TRAV13-1*01 TRAJ50*01 CASTQVDRPNYGYTF TRBV7-9*01 TRBJ1-2*01 HLA-B*08:01 B2M MHCI RAKFKQLL BZLF1 EBV PMID:34811538 tetramer-sort yes amplicon-seq effector T cells T1D T1D_5 chip0423_625262 PBMC +6484 CASSLGQAYEQYF TRBV7-8*01 TRBJ2-7*01 HLA-B*08:01 B2M MHCI FLRGRAYGL EBNA3A EBV PMID:34811538 tetramer-sort yes amplicon-seq effector memory T cells T1D T1D_6 chip0423_311656 PBMC +6485 CASRPQGGTEAFF TRAV3*01 TRAJ40*01 CASRPQGGTEAFF TRBV9*01 TRBJ1-1*01 HLA-A*01:01 B2M MHCI PTEKGANEY ZNT8 HomoSapiens PMID:34811538 tetramer-sort yes amplicon-seq Naive T cells T1D T1D_6 chip0423_605086 PBMC +6486 CAMSVSNFGNEKLTF TRAV12-3*01 TRAJ48*01 HLA-A*02:01 B2M MHCI LLAGIGTVPI PGT HomoSapiens PMID:34811538 tetramer-sort yes amplicon-seq Naive T cells T1D T1D_6 chip0423_501628 PBMC +6487 CILPLAGGTSYGKLTF TRAV26-2*01 TRAJ52*01 CASSLGQAYEQYF TRBV7-8*01 TRBJ2-7*01 HLA-B*08:01 B2M MHCI FLRGRAYGL EBNA3A EBV PMID:34811538 tetramer-sort yes amplicon-seq effector memory T cells T1D T1D_6 chip0423_494500 PBMC +6488 CASSQVNNPGDGYTF TRBV14*01 TRBJ1-2*01 HLA-B*08:01 B2M MHCI QAKWRLQTL EBNA3A EBV PMID:34811538 tetramer-sort yes amplicon-seq effector memory T cells T1D T1D_4 chip0423_240455 PBMC +6489 CSAGRDGTNEKLFF TRBV29-1*01 TRBJ1-4*01 HLA-A*02:01 B2M MHCI GLCTLVAML BLMF1 EBV PMID:34811538 tetramer-sort yes amplicon-seq effector memory T cells T1D T1D_6 chip0423_745982 PBMC +6490 CAVINDYKLSF TRAV8-1*01 TRAJ20*01 CSFRGSSGELFF TRBV29-1*01 TRBJ2-2*01 HLA-B*08:01 B2M MHCI ILKLQVFL IAPP HomoSapiens PMID:34811538 tetramer-sort yes amplicon-seq Naive T cells T1D T1D_6 chip0423_659646 PBMC +6491 CASSGGLNSPLHF TRAV14/DV4*01 TRAJ11*01 CASSGGLNSPLHF TRBV2*01 TRBJ1-6*01 HLA-A*01:01 B2M MHCI VSATAGTTVY GAD2 HomoSapiens PMID:34811538 tetramer-sort yes amplicon-seq Naive T cells T1D T1D_5 chip0423_388072 PBMC +6492 CIVREGGGADGLTF TRAV26-1*01 TRAJ45*01 CASSLAVGEGPQHF TRBV7-9*01 TRBJ1-5*01 HLA-B*08:01 B2M MHCI RAKFKQLL BZLF1 EBV PMID:34811538 tetramer-sort yes amplicon-seq effector memory T cells T1D T1D_4 chip0423_255327 PBMC +6493 SNVTAGGVADGPPF TRAV26-1*01 TRAJ45*01 CASSLAVGEGPQHF TRBV7-9*01 TRBJ1-5*01 HLA-B*08:01 B2M MHCI RAKFKQLL BZLF1 EBV PMID:34811538 tetramer-sort yes amplicon-seq effector memory T cells T1D T1D_4 chip0423_76711 PBMC +6495 CASSSDGMNTEAFF TRBV10-2*01 TRBJ1-1*01 HLA-A*02:01 B2M MHCI CLGGLLTMV LMP2A EBV PMID:34811538 tetramer-sort yes amplicon-seq effector memory T cells healthy healthy_4 chip0423_452387 PBMC +6496 CASSPPGRNEKLFF TRBV12-3*01,TRBV12-4*01 TRBJ1-4*01 HLA-B*08:01 B2M MHCI RAKFKQLL BZLF1 EBV PMID:34811538 tetramer-sort yes amplicon-seq effector memory T cells T1D T1D_5 chip0423_471173 PBMC +6498 CAMTLSNFGNEKLTF TRAV12-3*01 TRAJ48*01 CASSFSGTGAGYTF TRBV12-3*01,TRBV12-4*01 TRBJ1-2*01 HLA-A*02:01 B2M MHCI LLAGIGTVPI PGT HomoSapiens PMID:34811538 tetramer-sort yes amplicon-seq Naive T cells T1D T1D_6 chip0423_222643 PBMC +6499 CAFMKQSYGQNFVF TRAV38-1*01 TRAJ26*01 CARSLVGREAYEQYF TRBV5-6*01 TRBJ2-7*01 HLA-A*02:01 B2M MHCI RLLPLLALL PREINS HomoSapiens PMID:34811538 tetramer-sort yes amplicon-seq Naive T cells T1D T1D_4 chip0423_610434 PBMC +6500 CASSLGQAYEQYF TRBV7-8*01 TRBJ2-7*01 HLA-B*08:01 B2M MHCI FLRGRAYGL EBNA3A EBV PMID:34811538 tetramer-sort yes amplicon-seq effector memory T cells T1D T1D_6 chip0423_832378 PBMC +6501 CASSLAVLAGPNTEAFF TRBV7-3*01 TRBJ1-1*01 HLA-B*08:01 B2M MHCI RAKFKQLL BZLF1 EBV PMID:34811538 tetramer-sort yes amplicon-seq effector memory T cells T1D T1D_4 chip0423_789173 PBMC +6502 CASSPLGSHEKLFF TRAV36/DV7*01 TRAJ5*01 CASSPLGSNEKLFF TRBV7-9*01 TRBJ1-4*01 HLA-B*08:01 B2M MHCI RAKFKQLL BZLF1 EBV PMID:34811538 tetramer-sort yes amplicon-seq effector memory T cells T1D T1D_5 chip0423_656021 PBMC +6503 CAVSDGEGAQKLVF TRAV8-6*01 TRAJ54*01 CASSLTVLAGPNTEAFF TRBV7-3*01 TRBJ1-1*01 HLA-B*08:01 B2M MHCI RAKFKQLL BZLF1 EBV PMID:34811538 tetramer-sort yes amplicon-seq effector memory T cells T1D T1D_4 chip0423_752169 PBMC +6504 CAMAISNFGNEKLTF TRAV12-3*01 TRAJ48*01 HLA-A*02:01 B2M MHCI LLAGIGTVPI PGT HomoSapiens PMID:34811538 tetramer-sort yes amplicon-seq Naive T cells T1D T1D_4 chip0423_710390 PBMC +6505 CVAKETSYDKVIF TRAV12-1*01 TRAJ50*01 CASSALGGRGDTQYF TRBV7-9*01 TRBJ2-3*01 HLA-B*08:01 B2M MHCI RAKFKQLL BZLF1 EBV PMID:34811538 tetramer-sort yes amplicon-seq effector T cells T1D T1D_5 chip0423_453730 PBMC +6506 CILPLAGGTSYGKLTF TRAV26-2*01 TRAJ52*01 CASSLGQAYEQYF TRBV7-8*01 TRBJ2-7*01 HLA-B*08:01 B2M MHCI FLRGRAYGL EBNA3A EBV PMID:34811538 tetramer-sort yes amplicon-seq effector memory T cells T1D T1D_6 chip0423_439122 PBMC +6507 CASSQDPNGIYGYTF TRBV4-2*01 TRBJ1-2*01 HLA-B*08:01 B2M MHCI LLNVKLAL GFAP HomoSapiens PMID:34811538 tetramer-sort yes amplicon-seq Naive T cells T1D T1D_6 chip0423_351246 PBMC +6508 CASQGGSQGNLIF TRAV20*01 TRAJ42*01 HLA-A*02:01 B2M MHCI TLLANVTAV VP6 RotavirusA PMID:34811538 tetramer-sort yes amplicon-seq transitional T cells between effector and memory populations T1D T1D_6 chip0423_438398 PBMC +6509 CASSQVNNPGDGYTF TRBV14*01 TRBJ1-2*01 HLA-B*08:01 B2M MHCI QAKWRLQTL EBNA3A EBV PMID:34811538 tetramer-sort yes amplicon-seq effector memory T cells T1D T1D_4 chip0423_648974 PBMC +6510 CASSPGTSETGELFF TRBV12-3*01,TRBV12-4*01 TRBJ2-2*01 HLA-B*08:01 B2M MHCI RAKFKQLL BZLF1 EBV PMID:34811538 tetramer-sort yes amplicon-seq effector memory T cells T1D T1D_5 chip0423_629074 PBMC +6511 CVVNGENARLMF TRAV12-1*01 TRAJ31*01 CASSEMWGAPLHF TRBV2*01 TRBJ1-6*01 HLA-A*01:01 B2M MHCI CTELKLSDY NP InfluenzaA PMID:34811538 tetramer-sort yes amplicon-seq transitional T cells between effector and memory populations healthy healthy_3 chip0423_220822 PBMC +6512 CAAAETSYDKVIF TRAV13-1*01 TRAJ50*01 HLA-B*08:01 B2M MHCI RAKFKQLL BZLF1 EBV PMID:34811538 tetramer-sort yes amplicon-seq effector memory T cells T1D T1D_5 chip0423_130325 PBMC +6513 CALDRGGFKTIF TRAV6*01 TRAJ9*01 CASSFDLRGGVDGYTF TRBV27*01 TRBJ1-2*01 HLA-B*08:01 B2M MHCI RAKFKQLL BZLF1 EBV PMID:34811538 tetramer-sort yes amplicon-seq effector T cells T1D T1D_5 chip0423_440362 PBMC +6514 CASSLNGLDEQYF TRBV7-3*01 TRBJ2-7*01 HLA-B*08:01 B2M MHCI RAKFKQLL BZLF1 EBV PMID:34811538 tetramer-sort yes amplicon-seq effector T cells T1D T1D_4 chip0423_383888 PBMC +6515 CASSLGQAYEQYF TRBV7-8*01 TRBJ2-7*01 HLA-B*08:01 B2M MHCI FLRGRAYGL EBNA3A EBV PMID:34811538 tetramer-sort yes amplicon-seq effector T cells T1D T1D_6 chip0423_158142 PBMC +6516 CASSKQGGGYGYTF TRBV6-1*01 TRBJ1-2*01 HLA-A*02:01 B2M MHCI FLYALALLL LMP2 EBV PMID:34811538 tetramer-sort yes amplicon-seq central memory T cells T1D T1D_4 chip0423_596847 PBMC +6517 CASQLAGGTGELFF TRBV24-1*01 TRBJ2-2*01 HLA-B*08:01 B2M MHCI RAKFKQLL BZLF1 EBV PMID:34811538 tetramer-sort yes amplicon-seq effector memory T cells T1D T1D_5 chip0423_52564 PBMC +6518 CAYNWgg??caNNLFF TRAV29/DV5*01 TRAJ36*01 CASSMGNAFGKLFF TRBV6-1*01 TRBJ1-4*01 HLA-B*08:01 B2M MHCI FLRGRAYGL EBNA3A EBV PMID:34811538 tetramer-sort yes amplicon-seq effector memory T cells T1D T1D_4 chip0423_55422 PBMC +6519 CATDARNDYKLSF TRAV17*01 TRAJ20*01 CASSLDAGWFETQYF TRBV11-2*01 TRBJ2-5*01 HLA-A*02:01 B2M MHCI GILGFVFTL M1 InfluenzaA PMID:34811538 tetramer-sort yes amplicon-seq transitional T cells between effector and memory populations T1D T1D_6 chip0423_523168 PBMC +6520 CASSLRGGQETQYF TRBV7-3*01 TRBJ2-5*01 HLA-B*08:01 B2M MHCI RAKFKQLL BZLF1 EBV PMID:34811538 tetramer-sort yes amplicon-seq effector memory T cells T1D T1D_4 chip0423_604522 PBMC +6521 CASSYDSVKETQYF TRBV4-3*01 TRBJ2-5*01 HLA-A*02:01 B2M MHCI RMMEYGTTMV GAD65 HomoSapiens PMID:34811538 tetramer-sort yes amplicon-seq Naive T cells T1D T1D_4 chip0423_546666 PBMC +6522 CASSLAVGEGPQHF TRBV7-9*01 TRBJ1-5*01 HLA-B*08:01 B2M MHCI RAKFKQLL BZLF1 EBV PMID:34811538 tetramer-sort yes amplicon-seq effector memory T cells T1D T1D_4 chip0423_119141 PBMC +6523 CAAAETSYDKVIF TRAV13-1*01 TRAJ50*01 CASQLAGGTGELFF TRBV24-1*01 TRBJ2-2*01 HLA-B*08:01 B2M MHCI RAKFKQLL BZLF1 EBV PMID:34811538 tetramer-sort yes amplicon-seq effector T cells T1D T1D_5 chip0423_152318 PBMC +6524 CAVQRSSPg?aPTNCKLTF TRAV22*01 TRAJ53*01 CASSPWGDGETQYF TRBV3-1*01 TRBJ2-5*01 HLA-A*02:01 B2M MHCI GILGFVFTL M1 InfluenzaA PMID:34811538 tetramer-sort yes amplicon-seq Naive T cells T1D T1D_6 chip0423_859692 PBMC +6525 CAVRSMDSNYQLIW TRAV1-1*01 TRAJ33*01 CASGETATNEKLFF TRBV6-1*01 TRBJ1-4*01 HLA-B*08:01 B2M MHCI LWMRLLPL INS HomoSapiens PMID:34811538 tetramer-sort yes amplicon-seq Naive T cells T1D T1D_5 chip0423_622979 PBMC +6527 CAATPVSYNTDKLIF TRAV29/DV5*01 TRAJ34*01 CATRDRGRGEGGPQHF TRBV24-1*01 TRBJ1-5*01 HLA-A*01:01 B2M MHCI VTDAAHLLI ZNT8 HomoSapiens PMID:34811538 tetramer-sort yes amplicon-seq Naive T cells T1D T1D_4 chip0423_626298 PBMC +6528 CAVGAFSHFGPEKLTF TRAV8-3*01 TRAJ48*01 HLA-A*02:01 B2M MHCI YLLEMLWRL LMP1 EBV PMID:34811538 tetramer-sort yes amplicon-seq transitional T cells between effector and memory populations T1D T1D_4 chip0423_213250 PBMC +6529 CASSLAVGEGPQHF TRBV7-9*01 TRBJ1-5*01 HLA-B*08:01 B2M MHCI RAKFKQLL BZLF1 EBV PMID:34811538 tetramer-sort yes amplicon-seq effector memory T cells T1D T1D_4 chip0423_112717 PBMC +6530 CAVNSGHTPLVF TRAV1-2*01 TRAJ29*01 CASSQVNNPGDGYTF TRBV14*01 TRBJ1-2*01 HLA-B*08:01 B2M MHCI QAKWRLQTL EBNA3A EBV PMID:34811538 tetramer-sort yes amplicon-seq effector T cells T1D T1D_4 chip0423_832334 PBMC +6531 CAVSNWDSSYKLIF TRAV12-2*01 TRAJ12*01 CASSQLGGVYNEQFF TRBV7-9*01 TRBJ2-1*01 HLA-B*08:01 B2M MHCI RAKFKQLL BZLF1 EBV PMID:34811538 tetramer-sort yes amplicon-seq effector T cells T1D T1D_5 chip0423_234698 PBMC +6532 CASSPTGELYGYTF TRBV2*01 TRBJ1-2*01 HLA-B*08:01 B2M MHCI RAKFKQLL BZLF1 EBV PMID:34811538 tetramer-sort yes amplicon-seq effector memory T cells T1D T1D_5 chip0423_668412 PBMC +6533 CAMSGSNFGNEKLTF TRAV12-3*01 TRAJ48*01 CASSPGTASSENTIYF TRBV12-3*01,TRBV12-4*01 TRBJ1-3*01 HLA-A*02:01 B2M MHCI LLAGIGTVPI PGT HomoSapiens PMID:34811538 tetramer-sort yes amplicon-seq Naive T cells healthy healthy_3 chip0423_745790 PBMC +6534 CAAAETSYDKVIF TRAV13-1*01 TRAJ50*01 CASQLAGGTGELFF TRBV24-1*01 TRBJ2-2*01 HLA-B*08:01 B2M MHCI RAKFKQLL BZLF1 EBV PMID:34811538 tetramer-sort yes amplicon-seq effector memory T cells T1D T1D_5 chip0423_441421 PBMC +6535 CASSLSLAGVDTQYF TRBV27*01 TRBJ2-3*01 HLA-A*02:01 B2M MHCI LLAGIGTVPI PGT HomoSapiens PMID:34811538 tetramer-sort yes amplicon-seq Naive T cells T1D T1D_6 chip0423_757624 PBMC +6536 CAASGGGSQGNLIF TRAV13-1*01 TRAJ42*01 CASSMRSQETQYF TRBV19*01 TRBJ2-5*01 HLA-A*02:01 B2M MHCI GILGFVFTL M1 InfluenzaA PMID:34811538 tetramer-sort yes amplicon-seq transitional T cells between effector and memory populations healthy healthy_3 chip0423_647388 PBMC +6537 CAVRDTTWDDKIIF TRAV3*01 TRAJ30*01 CASSLGGGEGASEQFF TRBV7-6*01 TRBJ2-1*01 HLA-B*08:01 B2M MHCI FLRGRAYGL EBNA3A EBV PMID:34811538 tetramer-sort yes amplicon-seq effector memory T cells T1D T1D_4 chip0423_639017 PBMC +6538 CASSQVNNPGDGYTF TRBV14*01 TRBJ1-2*01 HLA-B*08:01 B2M MHCI QAKWRLQTL EBNA3A EBV PMID:34811538 tetramer-sort yes amplicon-seq effector T cells T1D T1D_4 chip0423_487832 PBMC +6539 CAVLQDSNYQLIW TRAV21*01 TRAJ33*01 CASSDDGMNTEAFF TRBV10-2*01 TRBJ1-1*01 HLA-A*02:01 B2M MHCI CLGGLLTMV LMP2A EBV PMID:34811538 tetramer-sort yes amplicon-seq central memory T cells T1D T1D_4 chip0423_235886 PBMC +6540 CIAREGGGADGLTF TRAV26-1*01 TRAJ45*01 CASSLAVGEGPQHF TRBV7-9*01 TRBJ1-5*01 HLA-B*08:01 B2M MHCI RAKFKQLL BZLF1 EBV PMID:34811538 tetramer-sort yes amplicon-seq effector memory T cells T1D T1D_4 chip0423_92088 PBMC +6541 CADGGATNKLIF TRAV21*01 TRAJ32*01 CSARDSTGNGYTF TRBV20-1*01 TRBJ1-2*01 HLA-A*02:01 B2M MHCI GLCTLVAML BLMF1 EBV PMID:34811538 tetramer-sort yes amplicon-seq effector memory T cells T1D T1D_4 chip0423_843015 PBMC +6542 CAWSVHNNEQYF TRBV30*01 TRBJ2-7*01 HLA-B*08:01 B2M MHCI YAYAKWKL ZNT8 HomoSapiens PMID:34811538 tetramer-sort yes amplicon-seq Naive T cells T1D T1D_5 chip0423_645091 PBMC +6543 CILPLAGGTSYGKLTF TRAV26-2*01 TRAJ52*01 CASSLGQAYEQYF TRBV7-8*01 TRBJ2-7*01 HLA-B*08:01 B2M MHCI FLRGRAYGL EBNA3A EBV PMID:34811538 tetramer-sort yes amplicon-seq effector memory T cells T1D T1D_6 chip0423_453244 PBMC +6544 CGTEINLta??acQGGKLIF TRAV30*01 TRAJ23*01 CASSLGGQTETQYF TRBV13*01 TRBJ2-5*01 HLA-A*02:01 B2M MHCI TLLANVTAV VP6 RotavirusA PMID:34811538 tetramer-sort yes amplicon-seq transitional T cells between effector and memory populations T1D T1D_6 chip0423_823918 PBMC +6545 CIVSAGGGADGLPF TRAV26-1*01 TRAJ45*01 CASSLAVGEGPQHF TRBV7-9*01 TRBJ1-5*01 HLA-B*08:01 B2M MHCI RAKFKQLL BZLF1 EBV PMID:34811538 tetramer-sort yes amplicon-seq effector memory T cells T1D T1D_4 chip0423_117210 PBMC +6546 CASSYREDSLEDGNTIYF TRBV6-2*01,TRBV6-3*01 TRBJ1-3*01 HLA-A*02:01 B2M MHCI LLAGIGTVPI PGT HomoSapiens PMID:34811538 tetramer-sort yes amplicon-seq Naive T cells T1D T1D_6 chip0423_847716 PBMC +6547 CASSDIREGQGEAFF TRBV10-2*01 TRBJ1-1*01 HLA-B*08:01 B2M MHCI QAKWRLQTL EBNA3A EBV PMID:34811538 tetramer-sort yes amplicon-seq effector memory T cells T1D T1D_6 chip0423_552820 PBMC +6548 CAMREGEAGGFKTIF TRAV14/DV4*01 TRAJ9*01 CASSHFSYEQYF TRBV14*01 TRBJ2-7*01 HLA-B*08:01 B2M MHCI RAKFKQLL BZLF1 EBV PMID:34811538 tetramer-sort yes amplicon-seq central memory T cells T1D T1D_5 chip0423_168160 PBMC +6549 CSASRDSYEQYF TRBV20-1*01 TRBJ2-7*01 HLA-A*02:01 B2M MHCI YLLEMLWRL LMP1 EBV PMID:34811538 tetramer-sort yes amplicon-seq transitional T cells between effector and memory populations T1D T1D_4 chip0423_93041 PBMC +6550 CASSLTGPIPNTDTQYF TRBV27*01 TRBJ2-3*01 HLA-B*08:01 B2M MHCI QAKWRLQTL EBNA3A EBV PMID:34811538 tetramer-sort yes amplicon-seq effector memory T cells T1D T1D_4 chip0423_753622 PBMC +6551 CASSQTMYQETQYF TRBV3-1*01 TRBJ2-5*01 HLA-A*02:01 B2M MHCI VAANIVLTV ZNT8 HomoSapiens PMID:34811538 tetramer-sort yes amplicon-seq Naive T cells T1D T1D_4 chip0423_864203 PBMC +6552 CLVEEPGVYLPCF TRAV4*01 TRAJ20*01 CASSLARTEAFF TRBV7-2*01 TRBJ1-1*01 HLA-B*08:01 B2M MHCI RAKFKQLL BZLF1 EBV PMID:34811538 tetramer-sort yes amplicon-seq effector T cells T1D T1D_5 chip0423_4985 PBMC +6554 CASSLGQAYEQYF TRBV7-8*01 TRBJ2-7*01 HLA-B*08:01 B2M MHCI FLRGRAYGL EBNA3A EBV PMID:34811538 tetramer-sort yes amplicon-seq effector memory T cells T1D T1D_4 chip0423_352508 PBMC +6555 CAALETSYDKVIF TRAV13-1*01 TRAJ50*01 CASSEPFEQYF TRBV2*01 TRBJ2-7*01 HLA-B*08:01 B2M MHCI RAKFKQLL BZLF1 EBV PMID:34811538 tetramer-sort yes amplicon-seq effector memory T cells T1D T1D_5 chip0423_666534 PBMC +6556 CAVNSGNTPLVL TRAV1-2*01 TRAJ29*01 CASSQVNNPGDGYTF TRBV14*01 TRBJ1-2*01 HLA-B*08:01 B2M MHCI QAKWRLQTL EBNA3A EBV PMID:34811538 tetramer-sort yes amplicon-seq effector memory T cells T1D T1D_4 chip0423_421525 PBMC +6557 CAVKDTDKLIF TRAV8-1*01 TRAJ34*01 HLA-A*02:01 B2M MHCI YVLDHLIVV BRLF1 EBV PMID:34811538 tetramer-sort yes amplicon-seq effector memory T cells healthy healthy_3 chip0423_413376 PBMC +6558 CASSPLGSNEKLFF TRBV7-9*01 TRBJ1-4*01 HLA-B*08:01 B2M MHCI RAKFKQLL BZLF1 EBV PMID:34811538 tetramer-sort yes amplicon-seq effector memory T cells T1D T1D_5 chip0423_303707 PBMC +6559 CAVREYGNKLVF TRAV1-2*01 TRAJ47*01 CASSLAGREGTQYF TRBV11-3*01,TRBV11-2*01 TRBJ2-3*01 HLA-B*08:01 B2M MHCI ELRSRYWAI NP InfluenzaA PMID:34811538 tetramer-sort yes amplicon-seq transitional T cells between effector and memory populations T1D T1D_6 chip0423_102649 PBMC +6560 CAFVE**??tAGNMLTF TRAV38-1*01 TRAJ39*01 CASSMSPGRSYEQYF TRBV6-1*01 TRBJ2-7*01 HLA-B*08:01 B2M MHCI QAKWRLQTL EBNA3A EBV PMID:34811538 tetramer-sort yes amplicon-seq Naive T cells healthy healthy_4 chip0423_46270 PBMC +6561 CGADMGRGTYKYIF TRAV34*01 TRAJ40*01 CASSSGTGEGYEQFF TRBV7-3*01 TRBJ2-1*01 HLA-B*08:01 B2M MHCI RAKFKQLL BZLF1 EBV PMID:34811538 tetramer-sort yes amplicon-seq effector memory T cells T1D T1D_4 chip0423_781520 PBMC +6562 CAEILYNTDKLIF TRAV5*01 TRAJ34*01 CASSLAGEQYF TRBV28*01 TRBJ2-7*01 HLA-A*01:01 B2M MHCI LTSLTILQLY G6PC2 HomoSapiens PMID:34811538 tetramer-sort yes amplicon-seq Naive T cells T1D T1D_5 chip0423_594626 PBMC +6563 CAAAETSYDKVIF TRAV13-1*01 TRAJ50*01 CASSQLGEAKEGTEAFF TRBV11-1*01 TRBJ1-1*01 HLA-B*08:01 B2M MHCI RAKFKQLL BZLF1 EBV PMID:34811538 tetramer-sort yes amplicon-seq effector memory T cells T1D T1D_5 chip0423_816773 PBMC +6564 CASSDDGMNTEAFF TRBV10-2*01 TRBJ1-1*01 HLA-A*02:01 B2M MHCI CLGGLLTMV LMP2A EBV PMID:34811538 tetramer-sort yes amplicon-seq central memory T cells healthy healthy_3 chip0423_644684 PBMC +6565 CASSEGIGNEQFF TRBV28*01 TRBJ2-1*01 HLA-A*02:01 B2M MHCI ALAGIGILTV MART1 HomoSapiens PMID:34811538 tetramer-sort yes amplicon-seq transitional T cells between effector and memory populations T1D T1D_4 chip0423_74841 PBMC +6566 CAVNSGNTPLVF TRAV1-2*01 TRAJ29*01 CASSSGTGHEYEQYF TRBV5-6*01 TRBJ2-7*01 HLA-A*02:01 B2M MHCI LLAGIGTVPI PGT HomoSapiens PMID:34811538 tetramer-sort yes amplicon-seq Naive T cells healthy healthy_3 chip0423_327528 PBMC +6567 CAAAETSYDKVIF TRAV13-1*01 TRAJ50*01 CASQLAGGTGELFF TRBV24-1*01 TRBJ2-2*01 HLA-B*08:01 B2M MHCI RAKFKQLL BZLF1 EBV PMID:34811538 tetramer-sort yes amplicon-seq effector memory T cells T1D T1D_5 chip0423_248101 PBMC +6569 CTVREGGGAGGLPF TRAV26-1*01 TRAJ45*01 CASSLAVGEGPQHF TRBV7-9*01 TRBJ1-5*01 HLA-B*08:01 B2M MHCI RAKFKQLL BZLF1 EBV PMID:34811538 tetramer-sort yes amplicon-seq effector memory T cells T1D T1D_4 chip0423_453487 PBMC +6570 CIVREGGGADGLTF TRAV26-1*01 TRAJ45*01 CASSLAVGEGPQHF TRBV7-9*01 TRBJ1-5*01 HLA-B*08:01 B2M MHCI RAKFKQLL BZLF1 EBV PMID:34811538 tetramer-sort yes amplicon-seq effector T cells T1D T1D_4 chip0423_256062 PBMC +6571 CAVHPFYSGGGAVGLPF TRAV12-2*01 TRAJ45*01 CASTQTGAGSPLHF TRBV28*01 TRBJ1-6*01 HLA-A*02:01 B2M MHCI ALAGIGILTV MART1 HomoSapiens PMID:34811538 tetramer-sort yes amplicon-seq transitional T cells between effector and memory populations T1D T1D_6 chip0423_505 PBMC +6572 CAVTSLYSGAGSYQLTF TRAV3*01 TRAJ28*01 HLA-B*08:01 B2M MHCI QAKWRLQTL EBNA3A EBV PMID:34811538 tetramer-sort yes amplicon-seq effector memory T cells T1D T1D_4 chip0423_66722 PBMC +6573 CSAGRDGTNEKLFF TRBV29-1*01 TRBJ1-4*01 HLA-A*02:01 B2M MHCI GLCTLVAML BLMF1 EBV PMID:34811538 tetramer-sort yes amplicon-seq effector memory T cells T1D T1D_6 chip0423_151095 PBMC +6574 CAVSGNTGKLIF TRAV20*01 TRAJ37*01 CASSQWDNQPQHF TRBV4-1*01 TRBJ1-5*01 HLA-B*08:01 B2M MHCI WMRLLPLL INS HomoSapiens PMID:34811538 tetramer-sort yes amplicon-seq transitional T cells between effector and memory populations T1D T1D_6 chip0423_774955 PBMC +6575 CAVQTGANSKLTF TRAV12-2*01 TRAJ56*01 CASSLMGPGALFF TRBV27*01 TRBJ2-2*01 HLA-A*01:01 B2M MHCI HSNLNDATY NP InfluenzaA PMID:34811538 tetramer-sort yes amplicon-seq Naive T cells healthy healthy_3 chip0423_295058 PBMC +6576 CASSLQGSNEQYF TRBV6-2*01,TRBV6-3*01 TRBJ2-7*01 HLA-A*02:01 B2M MHCI YVLDHLIVV BRLF1 EBV PMID:34811538 tetramer-sort yes amplicon-seq transitional T cells between effector and memory populations T1D T1D_4 chip0423_165427 PBMC +6577 CAVNSGNTPLVF TRAV1-2*01 TRAJ29*01 CASSQVNNPGDGYTF TRBV14*01 TRBJ1-2*01 HLA-B*08:01 B2M MHCI QAKWRLQTL EBNA3A EBV PMID:34811538 tetramer-sort yes amplicon-seq effector memory T cells T1D T1D_4 chip0423_474972 PBMC +6578 CAGHRASMCRVGTFIF TRAV35*01 TRAJ30*01 CASSIFQAGELFF TRBV19*01 TRBJ2-2*01 HLA-A*02:01 B2M MHCI GILGFVFTL M1 InfluenzaA PMID:34811538 tetramer-sort yes amplicon-seq transitional T cells between effector and memory populations T1D T1D_6 chip0423_17962 PBMC +6579 CAVPLYNTDKLIF TRAV21*01 TRAJ34*01 CASSVDLGTSGGSDTQYF TRBV9*01 TRBJ2-3*01 HLA-B*08:01 B2M MHCI NLIFKWIL G6PC2 HomoSapiens PMID:34811538 tetramer-sort yes amplicon-seq Naive T cells T1D T1D_5 chip0423_89433 PBMC +6580 CIVREGGGADGLTF TRAV26-1*01 TRAJ45*01 CASSLAVGEGPQHF TRBV7-9*01 TRBJ1-5*01 HLA-B*08:01 B2M MHCI RAKFKQLL BZLF1 EBV PMID:34811538 tetramer-sort yes amplicon-seq effector T cells T1D T1D_4 chip0423_7134 PBMC +6581 CAASKIEga?GGADGLTF TRAV23/DV6*01 TRAJ45*01 CASSLGQAYEQYF TRBV7-8*01 TRBJ2-7*01 HLA-B*08:01 B2M MHCI FLRGRAYGL EBNA3A EBV PMID:34811538 tetramer-sort yes amplicon-seq effector T cells T1D T1D_6 chip0423_493361 PBMC +6582 CSAGRDGTNEKLFF TRBV29-1*01 TRBJ1-4*01 HLA-A*02:01 B2M MHCI GLCTLVAML BLMF1 EBV PMID:34811538 tetramer-sort yes amplicon-seq effector memory T cells T1D T1D_6 chip0423_437636 PBMC +6583 CASQLAGGTGELFF TRBV24-1*01 TRBJ2-2*01 HLA-B*08:01 B2M MHCI RAKFKQLL BZLF1 EBV PMID:34811538 tetramer-sort yes amplicon-seq effector memory T cells T1D T1D_5 chip0423_153931 PBMC +6584 CAMTLSNFGNEKLTF TRAV12-3*01 TRAJ48*01 CASSLAGEAFVTQYF TRBV5-1*01 TRBJ2-3*01 HLA-A*02:01 B2M MHCI LLAGIGTVPI PGT HomoSapiens PMID:34811538 tetramer-sort yes amplicon-seq Naive T cells T1D T1D_6 chip0423_38585 PBMC +6585 CASSLTVLAGPNTEAFF TRBV7-3*01 TRBJ1-1*01 HLA-B*08:01 B2M MHCI RAKFKQLL BZLF1 EBV PMID:34811538 tetramer-sort yes amplicon-seq effector memory T cells T1D T1D_4 chip0423_645678 PBMC +6586 CAERTSGSRLTF TRAV5*01 TRAJ10*01,TRAJ27*01 HLA-A*01:01 B2M MHCI VSDGGPNLY PB1 InfluenzaA PMID:34811538 tetramer-sort yes amplicon-seq Naive T cells T1D T1D_4 chip0423_80599 PBMC +6587 CILPLAGGTSYGKLTF TRAV26-2*01 TRAJ52*01 CASSLGQAYEQYF TRBV7-8*01 TRBJ2-7*01 HLA-B*08:01 B2M MHCI FLRGRAYGL EBNA3A EBV PMID:34811538 tetramer-sort yes amplicon-seq effector memory T cells T1D T1D_6 chip0423_861337 PBMC +6588 CVVDSGTYKYIF TRAV12-1*01 TRAJ40*01 HLA-A*02:01 B2M MHCI ALAGIGILTV MART1 HomoSapiens PMID:34811538 tetramer-sort yes amplicon-seq Naive T cells T1D T1D_4 chip0423_348604 PBMC +6589 CGPATDNIARSMRTC TRAV30*01 TRAJ39*01 CASGFGDRGYNEQFF TRBV14*01 TRBJ2-1*01 HLA-A*02:01 B2M MHCI GILGFVFTL M1 InfluenzaA PMID:34811538 tetramer-sort yes amplicon-seq effector T cells T1D T1D_6 chip0423_653331 PBMC +6590 CIVRETNNDMRF TRAV26-1*01 TRAJ43*01 CASSSLSGGAGNEQFF TRBV7-9*01 TRBJ2-1*01 HLA-B*08:01 B2M MHCI RAKFKQLL BZLF1 EBV PMID:34811538 tetramer-sort yes amplicon-seq effector memory T cells T1D T1D_5 chip0423_781329 PBMC +6591 CIVREGGGADGLPF TRAV26-1*01 TRAJ45*01 CASSLAVGEGPQHF TRBV7-9*01 TRBJ1-5*01 HLA-B*08:01 B2M MHCI RAKFKQLL BZLF1 EBV PMID:34811538 tetramer-sort yes amplicon-seq effector memory T cells T1D T1D_4 chip0423_636941 PBMC +6592 CASSPLGSKAGELFF TRBV7-9*01 TRBJ2-2*01 HLA-B*08:01 B2M MHCI RAKFKQLL BZLF1 EBV PMID:34811538 tetramer-sort yes amplicon-seq effector memory T cells T1D T1D_5 chip0423_608767 PBMC +6593 CSAGRDGTNEKLFF TRBV29-1*01 TRBJ1-4*01 HLA-A*02:01 B2M MHCI GLCTLVAML BLMF1 EBV PMID:34811538 tetramer-sort yes amplicon-seq effector memory T cells T1D T1D_6 chip0423_219421 PBMC +6594 CASSYSGAHSYEQYF TRBV12-3*01,TRBV12-4*01 TRBJ2-7*01 HLA-B*08:01 B2M MHCI RAKFKQLL BZLF1 EBV PMID:34811538 tetramer-sort yes amplicon-seq effector T cells T1D T1D_5 chip0423_156665 PBMC +6595 CILGMPGGGADGLTF TRAV26-2*01 TRAJ45*01 CASSMGNAFGKLFF TRBV6-1*01 TRBJ1-4*01 HLA-B*08:01 B2M MHCI FLRGRAYGL EBNA3A EBV PMID:34811538 tetramer-sort yes amplicon-seq effector memory T cells T1D T1D_4 chip0423_813036 PBMC +6596 CAASDRLPGGSYIPTF TRAV13-1*01 TRAJ6*01 CSATNQYDGPDTEAFF TRBV20-1*01 TRBJ1-1*01 HLA-B*08:01 B2M MHCI RAKFKQLL BZLF1 EBV PMID:34811538 tetramer-sort yes amplicon-seq transitional T cells between effector and memory populations T1D T1D_4 chip0423_605136 PBMC +6597 CAMREGESSASKIIF TRAV14/DV4*01 TRAJ3*01 CSVGTAHGYTF TRBV29-1*01 TRBJ1-2*01 HLA-B*08:01 B2M MHCI RAKFKQLL BZLF1 EBV PMID:34811538 tetramer-sort yes amplicon-seq effector T cells T1D T1D_5 chip0423_451304 PBMC +6598 CAANYGGSQGNPIF TRAV25*01 TRAJ42*01 CASSIRSTDTQYF TRBV19*01 TRBJ2-3*01 HLA-A*02:01 B2M MHCI GILGFVFTL M1 InfluenzaA PMID:34811538 tetramer-sort yes amplicon-seq effector T cells T1D T1D_6 chip0423_416625 PBMC +6599 CASNTGTASKLTF TRAV29/DV5*01 TRAJ44*01 HLA-A*02:01 B2M MHCI YVLDHLIVV BRLF1 EBV PMID:34811538 tetramer-sort yes amplicon-seq effector memory T cells T1D T1D_4 chip0423_18614 PBMC +6600 CAATETSYDKVIF TRAV13-1*01 TRAJ50*01 CASSPPGRNEKLFF TRBV12-3*01,TRBV12-4*01 TRBJ1-4*01 HLA-B*08:01 B2M MHCI RAKFKQLL BZLF1 EBV PMID:34811538 tetramer-sort yes amplicon-seq effector T cells T1D T1D_5 chip0423_344411 PBMC +6601 CILPLAGGTSYGKLTF TRAV26-2*01 TRAJ52*01 CASSLGQAYEQYF TRBV7-8*01 TRBJ2-7*01 HLA-B*08:01 B2M MHCI FLRGRAYGL EBNA3A EBV PMID:34811538 tetramer-sort yes amplicon-seq effector memory T cells T1D T1D_6 chip0423_317383 PBMC +6602 CASSLAVGEGPQHF TRBV7-9*01 TRBJ1-5*01 HLA-B*08:01 B2M MHCI RAKFKQLL BZLF1 EBV PMID:34811538 tetramer-sort yes amplicon-seq effector memory T cells T1D T1D_4 chip0423_676436 PBMC +6603 CAARETSYDKVIF TRAV13-1*01 TRAJ50*01 CASSALGQIQETQYF TRBV7-9*01 TRBJ2-5*01 HLA-B*08:01 B2M MHCI RAKFKQLL BZLF1 EBV PMID:34811538 tetramer-sort yes amplicon-seq effector memory T cells T1D T1D_5 chip0423_442808 PBMC +6604 CIVRAGGARWGPLQF TRAV26-1*01 TRAJ24*01 CASSPLTDTQYF TRBV27*01 TRBJ2-3*01 HLA-B*08:01 B2M MHCI RAKFKQLL BZLF1 EBV PMID:34811538 tetramer-sort yes amplicon-seq effector T cells T1D T1D_4 chip0423_651531 PBMC +6605 CAVRDGQKLLF TRAV12-2*01 TRAJ16*01 CASSDGYEQFF TRBV4-2*01 TRBJ2-1*01 HLA-B*08:01 B2M MHCI EAKQKGFVPF GAD2 HomoSapiens PMID:34811538 tetramer-sort yes amplicon-seq Naive T cells T1D T1D_5 chip0423_736334 PBMC +6606 CASSSLSGGAGNEQFF TRBV7-9*01 TRBJ2-1*01 HLA-B*08:01 B2M MHCI RAKFKQLL BZLF1 EBV PMID:34811538 tetramer-sort yes amplicon-seq effector memory T cells T1D T1D_5 chip0423_540633 PBMC +6607 CILPLAGGTSYGKLTF TRAV26-2*01 TRAJ52*01 HLA-B*08:01 B2M MHCI FLRGRAYGL EBNA3A EBV PMID:34811538 tetramer-sort yes amplicon-seq effector memory T cells T1D T1D_6 chip0423_700662 PBMC +6608 CASSVYGATDTQYF TRBV9*01 TRBJ2-3*01 HLA-B*08:01 B2M MHCI ALKCKGFHV NP InfluenzaA PMID:34811538 tetramer-sort yes amplicon-seq Naive T cells T1D T1D_6 chip0423_648484 PBMC +6609 CAASETSYDKVIF TRAV13-1*01 TRAJ50*01 CASSAHRDGYTF TRBV7-8*01 TRBJ1-2*01 HLA-B*08:01 B2M MHCI RAKFKQLL BZLF1 EBV PMID:34811538 tetramer-sort yes amplicon-seq effector memory T cells T1D T1D_5 chip0423_342705 PBMC +6610 CASCRDGTYEQYF TRBV10-3*01 TRBJ2-7*01 HLA-A*01:01 B2M MHCI CTELKLSDY NP InfluenzaA PMID:34811538 tetramer-sort yes amplicon-seq transitional T cells between effector and memory populations healthy healthy_3 chip0423_106369 PBMC +6611 CAASETSYDKAIF TRAV13-1*01 TRAJ50*01 CASSYPDYGAGELFF TRBV7-3*01 TRBJ2-2*01 HLA-B*08:01 B2M MHCI RAKFKQLL BZLF1 EBV PMID:34811538 tetramer-sort yes amplicon-seq effector T cells T1D T1D_5 chip0423_816519 PBMC +6612 CASSQVGVNEQFF TRBV14*01 TRBJ2-1*01 HLA-A*02:01 B2M MHCI LLAGIGTVPI PGT HomoSapiens PMID:34811538 tetramer-sort yes amplicon-seq Naive T cells T1D T1D_6 chip0423_831426 PBMC +6613 CAENARYSGAGSYQLTF TRAV13-2*01 TRAJ28*01 CASSLALGLPYEQYF TRBV5-1*01 TRBJ2-7*01 HLA-B*08:01 B2M MHCI QAKWRLQTL EBNA3A EBV PMID:34811538 tetramer-sort yes amplicon-seq transitional T cells between effector and memory populations T1D T1D_4 chip0423_709814 PBMC +6614 CALSHLTGGGNKLTF TRAV19*01 TRAJ10*01 HLA-A*01:01 B2M MHCI STNVGSNTY IAPP HomoSapiens PMID:34811538 tetramer-sort yes amplicon-seq Naive T cells T1D T1D_5 chip0423_497829 PBMC +6615 CIVREGGGADGLTF TRAV26-1*01 TRAJ45*01 CASSLAVGEGPQHF TRBV7-9*01 TRBJ1-5*01 HLA-B*08:01 B2M MHCI RAKFKQLL BZLF1 EBV PMID:34811538 tetramer-sort yes amplicon-seq effector T cells T1D T1D_4 chip0423_627183 PBMC +6616 CILPLAGGTSYGKLTF TRAV26-2*01 TRAJ52*01 CASSLGQAYEQYF TRBV7-8*01 TRBJ2-7*01 HLA-B*08:01 B2M MHCI FLRGRAYGL EBNA3A EBV PMID:34811538 tetramer-sort yes amplicon-seq effector memory T cells T1D T1D_4 chip0423_48354 PBMC +6617 CAARETSYDKVIF TRAV13-1*01 TRAJ50*01 CASSPLGTADSENTIYF TRBV11-1*01 TRBJ1-3*01 HLA-B*08:01 B2M MHCI RAKFKQLL BZLF1 EBV PMID:34811538 tetramer-sort yes amplicon-seq effector memory T cells T1D T1D_5 chip0423_3103 PBMC +6618 CIAITStc??ccGNQFYF TRAV26-1*01 TRAJ49*01 CSAGRDGTNEKLFF TRBV29-1*01 TRBJ1-4*01 HLA-A*02:01 B2M MHCI GLCTLVAML BLMF1 EBV PMID:34811538 tetramer-sort yes amplicon-seq effector T cells T1D T1D_6 chip0423_400716 PBMC +6619 CALSEVTAGGSYIPTF TRAV19*01 TRAJ6*01 CASSPRDTAQETQYF TRBV19*01 TRBJ2-5*01 HLA-A*02:01 B2M MHCI MVWESGCTV PTPRN HomoSapiens PMID:34811538 tetramer-sort yes amplicon-seq Naive T cells T1D T1D_6 chip0423_351051 PBMC +6620 SPASNIDga?GGSAGLTF TRAV23/DV6*01 TRAJ45*01 CASSLGQAYEQYF TRBV7-8*01 TRBJ2-7*01 HLA-B*08:01 B2M MHCI FLRGRAYGL EBNA3A EBV PMID:34811538 tetramer-sort yes amplicon-seq effector memory T cells T1D T1D_6 chip0423_146026 PBMC +6621 CAMSRSNFGNEKLTF TRAV12-3*01 TRAJ48*01 CASSQEDREGLNNEQFF TRBV14*01 TRBJ2-1*01 HLA-A*02:01 B2M MHCI LLAGIGTVPI PGT HomoSapiens PMID:34811538 tetramer-sort yes amplicon-seq Naive T cells T1D T1D_6 chip0423_347683 PBMC +6623 CAVAGGGADGLTF TRAV12-2*01 TRAJ45*01 CASSFWGLGYTF TRBV12-3*01,TRBV12-4*01 TRBJ1-2*01 HLA-A*02:01 B2M MHCI ALAGIGILTV MART1 HomoSapiens PMID:34811538 tetramer-sort yes amplicon-seq Naive T cells T1D T1D_6 chip0423_175598 PBMC +6624 CASSDIREGQGEAFF TRBV10-2*01 TRBJ1-1*01 HLA-B*08:01 B2M MHCI QAKWRLQTL EBNA3A EBV PMID:34811538 tetramer-sort yes amplicon-seq central memory T cells T1D T1D_6 chip0423_34961 PBMC +6625 CILPLAGGTSYGKLTF TRAV26-2*01 TRAJ52*01 CASSLGQAYEQYF TRBV7-8*01 TRBJ2-7*01 HLA-B*08:01 B2M MHCI FLRGRAYGL EBNA3A EBV PMID:34811538 tetramer-sort yes amplicon-seq effector memory T cells T1D T1D_4 chip0423_595735 PBMC +6626 CASTISNFGNEKLTF TRAV12-3*01 TRAJ48*01 CARSPGGRRSPRDETQYF TRBV5-6*01 TRBJ2-5*01 HLA-A*02:01 B2M MHCI LLAGIGTVPI PGT HomoSapiens PMID:34811538 tetramer-sort yes amplicon-seq Naive T cells T1D T1D_4 chip0423_877702 PBMC +6627 CAVSDGEGAQKLVF TRAV8-6*01 TRAJ54*01 CASSLTVLAGPNTEAFF TRBV7-3*01 TRBJ1-1*01 HLA-B*08:01 B2M MHCI RAKFKQLL BZLF1 EBV PMID:34811538 tetramer-sort yes amplicon-seq effector memory T cells T1D T1D_4 chip0423_240648 PBMC +6628 CILPLAGGTSYGKLTF TRAV26-2*01 TRAJ52*01 CASSLGQAYEQYF TRBV7-8*01 TRBJ2-7*01 HLA-B*08:01 B2M MHCI FLRGRAYGL EBNA3A EBV PMID:34811538 tetramer-sort yes amplicon-seq effector memory T cells T1D T1D_6 chip0423_26593 PBMC +6629 CASSDDGMNTEAFF TRBV10-2*01 TRBJ1-1*01 HLA-A*02:01 B2M MHCI CLGGLLTMV LMP2A EBV PMID:34811538 tetramer-sort yes amplicon-seq central memory T cells T1D T1D_4 chip0423_858844 PBMC +6630 CASSVGRGEYNEQFF TRBV9*01 TRBJ2-1*01 HLA-B*08:01 B2M MHCI RAKFKQLL BZLF1 EBV PMID:34811538 tetramer-sort yes amplicon-seq effector memory T cells T1D T1D_4 chip0423_531859 PBMC +6631 CIVREGGGADGLTF TRAV26-1*01 TRAJ45*01 CASSLAVGEGPQHF TRBV7-9*01 TRBJ1-5*01 HLA-B*08:01 B2M MHCI RAKFKQLL BZLF1 EBV PMID:34811538 tetramer-sort yes amplicon-seq effector T cells T1D T1D_4 chip0423_741364 PBMC +6632 CILPLAGGTSYGKLTF TRAV26-2*01 TRAJ52*01 CASSLGQAYEQYF TRBV7-8*01 TRBJ2-7*01 HLA-B*08:01 B2M MHCI FLRGRAYGL EBNA3A EBV PMID:34811538 tetramer-sort yes amplicon-seq effector T cells T1D T1D_6 chip0423_467183 PBMC +6633 CAVVSARLMF TRAV12-2*01 TRAJ31*01 CASSSSDRPNEQFF TRBV7-3*01 TRBJ2-1*01 HLA-A*02:01 B2M MHCI LLAGIGTVPI PGT HomoSapiens PMID:34811538 tetramer-sort yes amplicon-seq Naive T cells T1D T1D_4 chip0423_474282 PBMC +6634 CAVRPLGGNTPLVF TRAV12-2*01 TRAJ29*01 CASGPDISYSYEQYF TRBV12-5*01 TRBJ2-7*01 HLA-B*08:01 B2M MHCI RAKFKQLL BZLF1 EBV PMID:34811538 tetramer-sort yes amplicon-seq effector memory T cells T1D T1D_5 chip0423_198248 PBMC +6635 CAVRGQAGTALIF TRAV12-2*01 TRAJ15*01 CASSEWDQRNTIYF TRBV2*01 TRBJ1-3*01 HLA-B*08:01 B2M MHCI YAYAKWKL ZNT8 HomoSapiens PMID:34811538 tetramer-sort yes amplicon-seq Naive T cells T1D T1D_6 chip0423_558381 PBMC +6636 CAAKETSYDKVIF TRAV13-1*01 TRAJ50*01 CASSLLGRSNTEAFF TRBV7-9*01 TRBJ1-1*01 HLA-B*08:01 B2M MHCI RAKFKQLL BZLF1 EBV PMID:34811538 tetramer-sort yes amplicon-seq effector T cells T1D T1D_5 chip0423_329099 PBMC +6637 CASSPPGRNEKLFF TRAV9-2*01 TRAJ5*01 CASSPPGRNEKLFF TRBV12-3*01,TRBV12-4*01 TRBJ1-4*01 HLA-B*08:01 B2M MHCI RAKFKQLL BZLF1 EBV PMID:34811538 tetramer-sort yes amplicon-seq effector T cells T1D T1D_5 chip0423_679532 PBMC +6638 CASGPDISYSYEQYF TRBV12-5*01 TRBJ2-7*01 HLA-B*08:01 B2M MHCI RAKFKQLL BZLF1 EBV PMID:34811538 tetramer-sort yes amplicon-seq effector memory T cells T1D T1D_5 chip0423_817388 PBMC +6639 CASSSGLAGGSHTGELFF TRBV11-1*01 TRBJ2-2*01 HLA-B*08:01 B2M MHCI RAKFKQLL BZLF1 EBV PMID:34811538 tetramer-sort yes amplicon-seq effector T cells T1D T1D_5 chip0423_593620 PBMC +6640 CIVREGGGADGLTF TRAV26-1*01 TRAJ45*01 CASSLAVGEGPQHF TRBV7-9*01 TRBJ1-5*01 HLA-B*08:01 B2M MHCI RAKFKQLL BZLF1 EBV PMID:34811538 tetramer-sort yes amplicon-seq effector memory T cells T1D T1D_4 chip0423_725285 PBMC +6641 CAAAETSYDKVIF TRAV13-1*01 TRAJ50*01 CASQLAGGTGELFF TRBV24-1*01 TRBJ2-2*01 HLA-B*08:01 B2M MHCI RAKFKQLL BZLF1 EBV PMID:34811538 tetramer-sort yes amplicon-seq effector memory T cells T1D T1D_5 chip0423_499374 PBMC +6642 CASSFTSGTDPELFF TRBV7-9*01 TRBJ2-2*01 HLA-B*08:01 B2M MHCI RAKFKQLL BZLF1 EBV PMID:34811538 tetramer-sort yes amplicon-seq transitional T cells between effector and memory populations T1D T1D_5 chip0423_840470 PBMC +6643 CASSSLSEGAGNEQFF TRBV7-9*01 TRBJ2-1*01 HLA-B*08:01 B2M MHCI RAKFKQLL BZLF1 EBV PMID:34811538 tetramer-sort yes amplicon-seq transitional T cells between effector and memory populations T1D T1D_5 chip0423_236677 PBMC +6644 CAVWAGNMLTF TRAV8-1*01 TRAJ39*01 HLA-A*02:01 B2M MHCI YVLDHLIVV BRLF1 EBV PMID:34811538 tetramer-sort yes amplicon-seq effector memory T cells T1D T1D_6 chip0423_352495 PBMC +6645 CAVSDGEGAQKLVF TRAV8-6*01 TRAJ54*01 CASSLTVLAGPNTEAFF TRBV7-3*01 TRBJ1-1*01 HLA-B*08:01 B2M MHCI RAKFKQLL BZLF1 EBV PMID:34811538 tetramer-sort yes amplicon-seq effector memory T cells T1D T1D_4 chip0423_174448 PBMC +6646 CAVKDTDKLIF TRAV8-1*01 TRAJ34*01 CASSEWELNYGYTF TRBV25-1*01 TRBJ1-2*01 HLA-A*02:01 B2M MHCI YVLDHLIVV BRLF1 EBV PMID:34811538 tetramer-sort yes amplicon-seq effector memory T cells T1D T1D_4 chip0423_733946 PBMC +6648 CAYIIG*cc?SGTYKYIF TRAV38-2/DV8*01 TRAJ40*01 HLA-B*08:01 B2M MHCI FLRGRAYGL EBNA3A EBV PMID:34811538 tetramer-sort yes amplicon-seq effector memory T cells T1D T1D_4 chip0423_323674 PBMC +6649 CAPYRLYGGSQGNLIF TRAV8-1*01 TRAJ42*01 CASSEYDRGTGANVLTF TRBV25-1*01 TRBJ2-6*01 HLA-A*02:01 B2M MHCI YVLDHLIVV BRLF1 EBV PMID:34811538 tetramer-sort yes amplicon-seq Naive T cells T1D T1D_4 chip0423_713129 PBMC +6650 CIAVTStc??ccGNQFYF TRAV26-1*01 TRAJ49*01 CSAGRDGTNEKLFF TRBV29-1*01 TRBJ1-4*01 HLA-A*02:01 B2M MHCI GLCTLVAML BLMF1 EBV PMID:34811538 tetramer-sort yes amplicon-seq effector memory T cells T1D T1D_6 chip0423_301531 PBMC +6651 CAVRDTTWDDKIIF TRAV3*01 TRAJ30*01 CASSLGGGEGASEQFF TRBV7-6*01 TRBJ2-1*01 HLA-B*08:01 B2M MHCI FLRGRAYGL EBNA3A EBV PMID:34811538 tetramer-sort yes amplicon-seq effector memory T cells T1D T1D_4 chip0423_215076 PBMC +6652 CAMSEDGFWIVLHSGSGTQV TRAV12-3*01 TRAJ41*01 CASSPGPNTEAFF TRBV4-2*01 TRBJ1-1*01 HLA-B*08:01 B2M MHCI RAKFKQLL BZLF1 EBV PMID:34811538 tetramer-sort yes amplicon-seq transitional T cells between effector and memory populations T1D T1D_4 chip0423_142877 PBMC +6653 CAVEAPPS??aTGANNLFF TRAV2*01 TRAJ36*01 CSVEDPVAGSGYGYTF TRBV29-1*01 TRBJ1-2*01 HLA-A*02:01 B2M MHCI LLAGIGTVPI PGT HomoSapiens PMID:34811538 tetramer-sort yes amplicon-seq Naive T cells T1D T1D_4 chip0423_117169 PBMC +6654 CAAAETSYDKVIF TRAV13-1*01 TRAJ50*01 CASQLAGGTGELFF TRBV24-1*01 TRBJ2-2*01 HLA-B*08:01 B2M MHCI RAKFKQLL BZLF1 EBV PMID:34811538 tetramer-sort yes amplicon-seq transitional T cells between effector and memory populations T1D T1D_5 chip0423_625277 PBMC +6655 CAAAETSYDKVIF TRAV13-1*01 TRAJ50*01 CASQLAGGTGELFF TRBV24-1*01 TRBJ2-2*01 HLA-B*08:01 B2M MHCI RAKFKQLL BZLF1 EBV PMID:34811538 tetramer-sort yes amplicon-seq effector memory T cells T1D T1D_5 chip0423_642570 PBMC +6656 CAGFPWAAGNKLTF TRAV25*01 TRAJ17*01 CASSMMTGDSYNSPLHF TRBV19*01 TRBJ1-6*01 HLA-A*01:01 B2M MHCI CTELKLSDY NP InfluenzaA PMID:34811538 tetramer-sort yes amplicon-seq transitional T cells between effector and memory populations T1D T1D_5 chip0423_605772 PBMC +6657 CATLGc?aTSLFF TRAV22*01 TRAJ36*01 CASQPGQGADEQYF TRBV19*01 TRBJ2-7*01 HLA-A*01:01 B2M MHCI GSHLVEALY INS HomoSapiens PMID:34811538 tetramer-sort yes amplicon-seq Naive T cells T1D T1D_5 chip0423_127942 PBMC +6658 CAEMETSYDKVIF TRAV13-2*01 TRAJ50*01 CASSSLSRGAGNEQFF TRBV7-9*01 TRBJ2-1*01 HLA-B*08:01 B2M MHCI RAKFKQLL BZLF1 EBV PMID:34811538 tetramer-sort yes amplicon-seq effector memory T cells T1D T1D_5 chip0423_77136 PBMC +6659 CASSQVNNPGDGYTF TRBV14*01 TRBJ1-2*01 HLA-B*08:01 B2M MHCI QAKWRLQTL EBNA3A EBV PMID:34811538 tetramer-sort yes amplicon-seq effector memory T cells T1D T1D_4 chip0423_431043 PBMC +6660 CILPLAGGTSYGKLTF TRAV26-2*01 TRAJ52*01 CASSLGQAYEQYF TRBV7-8*01 TRBJ2-7*01 HLA-B*08:01 B2M MHCI FLRGRAYGL EBNA3A EBV PMID:34811538 tetramer-sort yes amplicon-seq effector memory T cells T1D T1D_6 chip0423_170246 PBMC +6661 CAISLSNFASGTLAF TRAV12-3*01 TRAJ48*01 CASSLEERGFTDTQYF TRBV11-2*01 TRBJ2-3*01 HLA-A*02:01 B2M MHCI LLAGIGTVPI PGT HomoSapiens PMID:34811538 tetramer-sort yes amplicon-seq Naive T cells T1D T1D_4 chip0423_59682 PBMC +6662 CAYRSAEWENNARLMF TRAV38-2/DV8*01 TRAJ31*01 CASSFVLAGGQGADTQYF TRBV7-3*01 TRBJ2-3*01 HLA-B*08:01 B2M MHCI RAKFKQLL BZLF1 EBV PMID:34811538 tetramer-sort yes amplicon-seq effector memory T cells T1D T1D_4 chip0423_403231 PBMC +6663 RALSDGGQgc??tcPGRGALPF TRAV9-2*01 TRAJ5*01 CASSQGTYEQYF TRBV3-1*01 TRBJ2-7*01 HLA-A*02:01 B2M MHCI LNIDLLWSV IGRP HomoSapiens PMID:34811538 tetramer-sort yes amplicon-seq Naive T cells T1D T1D_6 chip0423_11593 PBMC +6665 CAVPSGPPPLVF TRAV1-2*01 TRAJ29*01 CASSQVNNPGDGYTF TRBV14*01 TRBJ1-2*01 HLA-B*08:01 B2M MHCI QAKWRLQTL EBNA3A EBV PMID:34811538 tetramer-sort yes amplicon-seq effector memory T cells T1D T1D_4 chip0423_872536 PBMC +6666 CIVREGGGADGLTF TRAV26-1*01 TRAJ45*01 CASSLAVGEGPQHF TRBV7-9*01 TRBJ1-5*01 HLA-B*08:01 B2M MHCI RAKFKQLL BZLF1 EBV PMID:34811538 tetramer-sort yes amplicon-seq effector T cells T1D T1D_4 chip0423_449053 PBMC +6667 CASSSGTGEGYEQFF TRBV7-3*01 TRBJ2-1*01 HLA-B*08:01 B2M MHCI RAKFKQLL BZLF1 EBV PMID:34811538 tetramer-sort yes amplicon-seq effector memory T cells T1D T1D_4 chip0423_800783 PBMC +6668 CVVNGENARLMF TRAV12-1*01 TRAJ31*01 CASSEMWGAPLHF TRBV2*01 TRBJ1-6*01 HLA-A*01:01 B2M MHCI CTELKLSDY NP InfluenzaA PMID:34811538 tetramer-sort yes amplicon-seq transitional T cells between effector and memory populations healthy healthy_3 chip0423_783010 PBMC +6669 CASSLLGQYTGELFF TRBV7-2*01 TRBJ2-2*01 HLA-B*08:01 B2M MHCI RAKFKQLL BZLF1 EBV PMID:34811538 tetramer-sort yes amplicon-seq effector T cells T1D T1D_5 chip0423_481345 PBMC +6670 CALEYGNKLVF TRAV38-1*01 TRAJ47*01 CASSPGRQTYEQYF TRBV5-4*01 TRBJ2-7*01 HLA-A*01:01 B2M MHCI QQDKHYDLSY GAD2 HomoSapiens PMID:34811538 tetramer-sort yes amplicon-seq Naive T cells healthy healthy_3 chip0423_408675 PBMC +6671 CAVSGNTGKLIF TRAV20*01 TRAJ37*01 CASSQWDNQPQHF TRBV4-1*01 TRBJ1-5*01 HLA-B*08:01 B2M MHCI WMRLLPLL INS HomoSapiens PMID:34811538 tetramer-sort yes amplicon-seq transitional T cells between effector and memory populations T1D T1D_6 chip0423_302303 PBMC +6672 CASSFIGIIAEAFF TRBV7-9*01 TRBJ1-1*01 HLA-B*08:01 B2M MHCI YLKDQQLL gp160 HIV-1 PMID:34811538 tetramer-sort yes amplicon-seq transitional T cells between effector and memory populations T1D T1D_5 chip0423_101478 PBMC +6673 CIYNTGGGNKLTF TRAV26-2*01 TRAJ10*01 CASNLLQGDTEAFF TRBV7-9*01 TRBJ1-1*01 HLA-B*08:01 B2M MHCI RAKFKQLL BZLF1 EBV PMID:34811538 tetramer-sort yes amplicon-seq effector memory T cells T1D T1D_5 chip0423_813509 PBMC +6674 CASSLAVGEGPQHF TRBV7-9*01 TRBJ1-5*01 HLA-B*08:01 B2M MHCI RAKFKQLL BZLF1 EBV PMID:34811538 tetramer-sort yes amplicon-seq effector memory T cells T1D T1D_4 chip0423_96356 PBMC +6675 CAATETSYDKVIF TRAV13-1*01 TRAJ50*01 CASNLLQRDTEAFF TRBV7-9*01 TRBJ1-1*01 HLA-B*08:01 B2M MHCI RAKFKQLL BZLF1 EBV PMID:34811538 tetramer-sort yes amplicon-seq effector memory T cells T1D T1D_5 chip0423_592052 PBMC +6676 CIRPLAGGTRYGTLAF TRAV26-2*01 TRAJ52*01 CASSQGQAYEQYS TRBV7-8*01 TRBJ2-7*01 HLA-B*08:01 B2M MHCI FLRGRAYGL EBNA3A EBV PMID:34811538 tetramer-sort yes amplicon-seq effector memory T cells T1D T1D_4 chip0423_316239 PBMC +6677 CVVKLEtt??ccGYALTF TRAV12-1*01 TRAJ41*01 CASSRGTSEAFF TRBV27*01 TRBJ1-1*01 HLA-B*08:01 B2M MHCI MALWMRLL INS HomoSapiens PMID:34811538 tetramer-sort yes amplicon-seq Naive T cells T1D T1D_6 chip0423_723239 PBMC +6678 CASSQVNNPGDGYTF TRBV14*01 TRBJ1-2*01 HLA-B*08:01 B2M MHCI QAKWRLQTL EBNA3A EBV PMID:34811538 tetramer-sort yes amplicon-seq effector memory T cells T1D T1D_4 chip0423_357889 PBMC +6679 CAAFITDLRF TRAV12-2*01 TRAJ43*01 CSVAGVDYEQYF TRBV29-1*01 TRBJ2-7*01 HLA-A*02:01 B2M MHCI ALAGIGILTV MART1 HomoSapiens PMID:34811538 tetramer-sort yes amplicon-seq Naive T cells T1D T1D_6 chip0423_168752 PBMC +6680 CAANYGGSQGNLIF TRAV25*01 TRAJ42*01 CASSIRSTDTQYF TRBV19*01 TRBJ2-3*01 HLA-A*02:01 B2M MHCI GILGFVFTL M1 InfluenzaA PMID:34811538 tetramer-sort yes amplicon-seq effector T cells T1D T1D_6 chip0423_77710 PBMC +6681 CAGSRTDPLIF TRAV27*01 TRAJ34*01 CASSSTGGGDQPQHF TRBV7-9*01 TRBJ1-5*01 HLA-B*08:01 B2M MHCI RAKFKQLL BZLF1 EBV PMID:34811538 tetramer-sort yes amplicon-seq effector memory T cells T1D T1D_4 chip0423_60092 PBMC +6682 LRQQVARca?DDNSPLHF TRAV20*01 TRAJ11*01 CSAGGNTEAFF TRBV29-1*01 TRBJ1-1*01 HLA-B*08:01 B2M MHCI RAKFKQLL BZLF1 EBV PMID:34811538 tetramer-sort yes amplicon-seq effector memory T cells T1D T1D_5 chip0423_29914 PBMC +6683 CAVSSG??aAQKLVF TRAV8-4*01 TRAJ54*01 LCLQ*FAgg??tcDGYEQFF TRBV24-1*01 TRBJ2-1*01 HLA-A*02:01 B2M MHCI VAANIVLTV ZNT8 HomoSapiens PMID:34811538 tetramer-sort yes amplicon-seq Naive T cells healthy healthy_3 chip0423_678191 PBMC +6684 CAMREGEAGGFKTIF TRAV14/DV4*01 TRAJ9*01 CSANPPGRVGAFF TRBV20-1*01 TRBJ1-1*01 HLA-B*08:01 B2M MHCI RAKFKQLL BZLF1 EBV PMID:34811538 tetramer-sort yes amplicon-seq effector memory T cells T1D T1D_5 chip0423_247298 PBMC +6685 CASRANSLYEQYF TRBV2*01 TRBJ2-7*01 HLA-A*01:01 B2M MHCI HSNLNDATY NP InfluenzaA PMID:34811538 tetramer-sort yes amplicon-seq effector memory T cells T1D T1D_6 chip0423_300243 PBMC +6686 CVVNKLSF TRAV12-1*01 TRAJ20*01 CASSSGGGAGYEQYF TRBV19*01 TRBJ2-7*01 HLA-A*01:01 B2M MHCI HSNLNDATY NP InfluenzaA PMID:34811538 tetramer-sort yes amplicon-seq Naive T cells healthy healthy_3 chip0423_204688 PBMC +6687 CALTTYGQNFVF TRAV38-1*01 TRAJ26*01 CSASRDSYEQYF TRBV20-1*01 TRBJ2-7*01 HLA-A*02:01 B2M MHCI YLLEMLWRL LMP1 EBV PMID:34811538 tetramer-sort yes amplicon-seq central memory T cells T1D T1D_4 chip0423_9884 PBMC +6688 CIVREGGGADGLTF TRAV26-1*01 TRAJ45*01 CASSLAVGEGPQHF TRBV7-9*01 TRBJ1-5*01 HLA-B*08:01 B2M MHCI RAKFKQLL BZLF1 EBV PMID:34811538 tetramer-sort yes amplicon-seq effector T cells T1D T1D_4 chip0423_750024 PBMC +6689 CASSQVTNPGDGYTF TRBV14*01 TRBJ1-2*01 HLA-B*08:01 B2M MHCI QAKWRLQTL EBNA3A EBV PMID:34811538 tetramer-sort yes amplicon-seq effector memory T cells T1D T1D_4 chip0423_541305 PBMC +6690 CASSQEDSRWEQFF TRBV14*01 TRBJ2-1*01 HLA-A*02:01 B2M MHCI YLLEMLWRL LMP1 EBV PMID:34811538 tetramer-sort yes amplicon-seq effector memory T cells T1D T1D_4 chip0423_64499 PBMC +6691 CASSQVNNPGDGYTF TRBV14*01 TRBJ1-2*01 HLA-B*08:01 B2M MHCI QAKWRLQTL EBNA3A EBV PMID:34811538 tetramer-sort yes amplicon-seq effector memory T cells T1D T1D_4 chip0423_60696 PBMC +6692 CAASETSYDKVIF TRAV13-1*01 TRAJ50*01 HLA-B*08:01 B2M MHCI RAKFKQLL BZLF1 EBV PMID:34811538 tetramer-sort yes amplicon-seq effector memory T cells T1D T1D_5 chip0423_840453 PBMC +6693 CAVRDIHTGGFKTTF TRAV3*01 TRAJ9*01 CASSARDDYDEQYF TRBV9*01 TRBJ2-7*01 HLA-A*02:01 B2M MHCI GILGFVFTL M1 InfluenzaA PMID:34811538 tetramer-sort yes amplicon-seq transitional T cells between effector and memory populations T1D T1D_6 chip0423_38354 PBMC +6694 CAATETSYDKVIF TRAV13-1*01 TRAJ50*01 CASSPPGRNEKLFF TRBV12-3*01,TRBV12-4*01 TRBJ1-4*01 HLA-B*08:01 B2M MHCI RAKFKQLL BZLF1 EBV PMID:34811538 tetramer-sort yes amplicon-seq effector T cells T1D T1D_5 chip0423_679417 PBMC +6695 CASSLTVLAGPNTEAFF TRBV7-3*01 TRBJ1-1*01 HLA-B*08:01 B2M MHCI RAKFKQLL BZLF1 EBV PMID:34811538 tetramer-sort yes amplicon-seq effector memory T cells T1D T1D_4 chip0423_361121 PBMC +6696 CAGPPGSPGHLIF TRAV27*01 TRAJ37*01 CASSDRGGYEQYF TRBV19*01 TRBJ2-7*01 HLA-A*02:01 B2M MHCI GILGFVFTL M1 InfluenzaA PMID:34811538 tetramer-sort yes amplicon-seq transitional T cells between effector and memory populations T1D T1D_6 chip0423_858293 PBMC +6697 CIIQLASGTSYGKLNF TRAV26-2*01 TRAJ52*01 CASSLGQAYEQYF TRBV7-8*01 TRBJ2-7*01 HLA-B*08:01 B2M MHCI FLRGRAYGL EBNA3A EBV PMID:34811538 tetramer-sort yes amplicon-seq transitional T cells between effector and memory populations T1D T1D_6 chip0423_507107 PBMC +6698 CAGQRETSYDKVIF TRAV25*01 TRAJ50*01 CASSQLGGVYNEQFF TRBV7-9*01 TRBJ2-1*01 HLA-B*08:01 B2M MHCI RAKFKQLL BZLF1 EBV PMID:34811538 tetramer-sort yes amplicon-seq effector memory T cells T1D T1D_5 chip0423_210994 PBMC +6699 CASSLAVGEGPQHF TRBV7-9*01 TRBJ1-5*01 HLA-B*08:01 B2M MHCI RAKFKQLL BZLF1 EBV PMID:34811538 tetramer-sort yes amplicon-seq effector memory T cells T1D T1D_4 chip0423_512167 PBMC +6700 CASSLTVLAGPNTEAFF TRBV7-3*01 TRBJ1-1*01 HLA-B*08:01 B2M MHCI RAKFKQLL BZLF1 EBV PMID:34811538 tetramer-sort yes amplicon-seq effector T cells T1D T1D_4 chip0423_454916 PBMC +6701 CAGAQLRg?cGSVGLVF TRAV35*01 TRAJ57*01 HLA-A*02:01 B2M MHCI ALAGIGILTV MART1 HomoSapiens PMID:34811538 tetramer-sort yes amplicon-seq Naive T cells healthy healthy_3 chip0423_443525 PBMC +6702 CASSLEVNRQETQYF TRBV7-9*01 TRBJ2-5*01 HLA-B*08:01 B2M MHCI FLHRNGVL G6PC2 HomoSapiens PMID:34811538 tetramer-sort yes amplicon-seq Naive T cells T1D T1D_5 chip0423_128422 PBMC +6703 CAVSESNFGNEKLTF TRAV12-2*01 TRAJ48*01 CASSLASLVETQYF TRBV7-2*01 TRBJ2-5*01 HLA-A*02:01 B2M MHCI LLAGIGTVPI PGT HomoSapiens PMID:34811538 tetramer-sort yes amplicon-seq natural killer-like T cells T1D T1D_6 chip0423_466210 PBMC +6704 CASSLGQAYEQYF TRBV7-8*01 TRBJ2-7*01 HLA-B*08:01 B2M MHCI FLRGRAYGL EBNA3A EBV PMID:34811538 tetramer-sort yes amplicon-seq effector memory T cells T1D T1D_6 chip0423_316390 PBMC +6705 CASSLAVGEGPQHF TRBV7-9*01 TRBJ1-5*01 HLA-B*08:01 B2M MHCI RAKFKQLL BZLF1 EBV PMID:34811538 tetramer-sort yes amplicon-seq effector memory T cells T1D T1D_4 chip0423_735415 PBMC +6706 CAGAPGRAATIIF TRAV27*01 TRAJ30*01 CASSEERGRSYEQYF TRBV6-1*01 TRBJ2-7*01 HLA-B*08:01 B2M MHCI EIYKRWII Gag HIV-1 PMID:34811538 tetramer-sort yes amplicon-seq Naive T cells T1D T1D_6 chip0423_285074 PBMC +6707 CASSQVNNPGDGYTF TRBV14*01 TRBJ1-2*01 HLA-B*08:01 B2M MHCI QAKWRLQTL EBNA3A EBV PMID:34811538 tetramer-sort yes amplicon-seq effector memory T cells T1D T1D_4 chip0423_135702 PBMC +6709 CAISETRQYSYEQYF TRBV10-3*01 TRBJ2-7*01 HLA-B*08:01 B2M MHCI RAKFKQLL BZLF1 EBV PMID:34811538 tetramer-sort yes amplicon-seq effector memory T cells T1D T1D_5 chip0423_236805 PBMC +6710 CP*g?gGGF TRAV23/DV6*01 TRAJ11*01 CASQLAGGTGELFF TRBV24-1*01 TRBJ2-2*01 HLA-B*08:01 B2M MHCI RAKFKQLL BZLF1 EBV PMID:34811538 tetramer-sort yes amplicon-seq effector memory T cells T1D T1D_5 chip0423_629004 PBMC +6711 CASSLAVGEGPQHF TRBV7-9*01 TRBJ1-5*01 HLA-B*08:01 B2M MHCI RAKFKQLL BZLF1 EBV PMID:34811538 tetramer-sort yes amplicon-seq effector memory T cells T1D T1D_4 chip0423_611229 PBMC +6712 CAVSGNTGKLIF TRAV20*01 TRAJ37*01 CASSQWDNQPQHF TRBV4-1*01 TRBJ1-5*01 HLA-B*08:01 B2M MHCI WMRLLPLL INS HomoSapiens PMID:34811538 tetramer-sort yes amplicon-seq transitional T cells between effector and memory populations T1D T1D_6 chip0423_788566 PBMC +6713 RILPLAGGASYGKLTF TRAV26-2*01 TRAJ52*01 CASSLGQAYEQYF TRBV7-8*01 TRBJ2-7*01 HLA-B*08:01 B2M MHCI FLRGRAYGL EBNA3A EBV PMID:34811538 tetramer-sort yes amplicon-seq effector memory T cells T1D T1D_6 chip0423_803762 PBMC +6714 CILPLADGTSYGKLTF TRAV26-2*01 TRAJ52*01 HLA-B*08:01 B2M MHCI FLRGRAYGL EBNA3A EBV PMID:34811538 tetramer-sort yes amplicon-seq effector memory T cells T1D T1D_6 chip0423_412673 PBMC +6715 CIVREGGAAAGLTL TRAV26-1*01 TRAJ45*01 CASSLAVGEGPQHF TRBV7-9*01 TRBJ1-5*01 HLA-B*08:01 B2M MHCI RAKFKQLL BZLF1 EBV PMID:34811538 tetramer-sort yes amplicon-seq effector memory T cells T1D T1D_4 chip0423_839194 PBMC +6716 CASSYSSTGEYF TRBV6-2*01,TRBV6-3*01 TRBJ2-7*01 HLA-A*02:01 B2M MHCI YLLEMLWRL LMP1 EBV PMID:34811538 tetramer-sort yes amplicon-seq central memory T cells T1D T1D_4 chip0423_333518 PBMC +6717 CIVREGGGADGLPF TRAV26-1*01 TRAJ45*01 CASSLAVGEEPQHF TRBV7-9*01 TRBJ1-5*01 HLA-B*08:01 B2M MHCI RAKFKQLL BZLF1 EBV PMID:34811538 tetramer-sort yes amplicon-seq effector memory T cells T1D T1D_4 chip0423_220278 PBMC +6718 CIVREGGGADGLTF TRAV26-1*01 TRAJ45*01 CASSLAVGEGPQHF TRBV7-9*01 TRBJ1-5*01 HLA-B*08:01 B2M MHCI RAKFKQLL BZLF1 EBV PMID:34811538 tetramer-sort yes amplicon-seq effector memory T cells T1D T1D_4 chip0423_515779 PBMC +6719 CAAAETSYDKVIF TRAV13-1*01 TRAJ50*01 CASQLAGGTGELFF TRBV24-1*01 TRBJ2-2*01 HLA-B*08:01 B2M MHCI RAKFKQLL BZLF1 EBV PMID:34811538 tetramer-sort yes amplicon-seq effector memory T cells T1D T1D_5 chip0423_331189 PBMC +6720 CASSQVNNPGDGYTF TRBV14*01 TRBJ1-2*01 HLA-B*08:01 B2M MHCI QAKWRLQTL EBNA3A EBV PMID:34811538 tetramer-sort yes amplicon-seq effector memory T cells T1D T1D_4 chip0423_518883 PBMC +6721 CSGNWGGIELAKNIQYF TRBV20-1*01 TRBJ2-4*01 HLA-A*02:01 B2M MHCI ELAGIGILTV MART1 HomoSapiens PMID:34811538 tetramer-sort yes amplicon-seq Naive T cells T1D T1D_6 chip0423_514139 PBMC +6722 CASSLGQAYEQYF TRBV7-8*01 TRBJ2-7*01 HLA-B*08:01 B2M MHCI FLRGRAYGL EBNA3A EBV PMID:34811538 tetramer-sort yes amplicon-seq effector memory T cells T1D T1D_6 chip0423_314871 PBMC +6723 CAASRLAgc?GGAAGLTF TRAV23/DV6*01 TRAJ45*01 HLA-B*08:01 B2M MHCI FLRGRAYGL EBNA3A EBV PMID:34811538 tetramer-sort yes amplicon-seq effector memory T cells T1D T1D_6 chip0423_216455 PBMC +6724 CATDAGDRDDKIIF TRAV17*01 TRAJ30*01 CASSLYPTEWYF TRBV27*01 TRBJ2-7*01 HLA-A*02:01 B2M MHCI GLCTLVAML BLMF1 EBV PMID:34811538 tetramer-sort yes amplicon-seq effector memory T cells T1D T1D_4 chip0423_352020 PBMC +6725 CAASDRLPGGSYIPTF TRAV13-1*01 TRAJ6*01 CSATNQYDGPDTEAFF TRBV20-1*01 TRBJ1-1*01 HLA-B*08:01 B2M MHCI RAKFKQLL BZLF1 EBV PMID:34811538 tetramer-sort yes amplicon-seq transitional T cells between effector and memory populations T1D T1D_4 chip0423_851088 PBMC +6726 CAVRDTTWDDKIIF TRAV3*01 TRAJ30*01 CASSLGGGEGASEQFF TRBV7-6*01 TRBJ2-1*01 HLA-B*08:01 B2M MHCI FLRGRAYGL EBNA3A EBV PMID:34811538 tetramer-sort yes amplicon-seq effector memory T cells T1D T1D_4 chip0423_114878 PBMC +6727 CASSQVNNPGDGYTF TRBV14*01 TRBJ1-2*01 HLA-B*08:01 B2M MHCI QAKWRLQTL EBNA3A EBV PMID:34811538 tetramer-sort yes amplicon-seq effector memory T cells T1D T1D_4 chip0423_388994 PBMC +6728 CATEGPSGYSTLTF TRAV17*01 TRAJ11*01 RASRRLGGHGYTF TRBV6-1*01 TRBJ1-2*01 HLA-A*02:01 B2M MHCI FLYALALLL LMP2 EBV PMID:34811538 tetramer-sort yes amplicon-seq effector memory T cells T1D T1D_6 chip0423_872844 PBMC +6729 CASSQDSAEANTGELFF TRBV4-3*01 TRBJ2-2*01 HLA-A*02:01 B2M MHCI CINGVCWTV NS3 HCV PMID:34811538 tetramer-sort yes amplicon-seq Naive T cells T1D T1D_4 chip0423_501775 PBMC +6730 CAGSPPPSSGAGPFQLTF TRAV35*01 TRAJ28*01 CASSLHRTLLSGNTIYF TRBV28*01 TRBJ1-3*01 HLA-B*08:01 B2M MHCI QAKWRLQTL EBNA3A EBV PMID:34811538 tetramer-sort yes amplicon-seq effector memory T cells T1D T1D_4 chip0423_879120 PBMC +6731 CASSYSSTGEYF TRBV6-2*01,TRBV6-3*01 TRBJ2-7*01 HLA-A*02:01 B2M MHCI YLLEMLWRL LMP1 EBV PMID:34811538 tetramer-sort yes amplicon-seq central memory T cells T1D T1D_4 chip0423_874965 PBMC +6732 RAVSDGEGAPKLVF TRAV8-6*01 TRAJ54*01 CASSLTVLAGPNTEAFF TRBV7-3*01 TRBJ1-1*01 HLA-B*08:01 B2M MHCI RAKFKQLL BZLF1 EBV PMID:34811538 tetramer-sort yes amplicon-seq effector memory T cells T1D T1D_4 chip0423_699242 PBMC +6733 CASSQLGGVYNEQFF TRBV7-9*01 TRBJ2-1*01 HLA-B*08:01 B2M MHCI RAKFKQLL BZLF1 EBV PMID:34811538 tetramer-sort yes amplicon-seq effector memory T cells T1D T1D_5 chip0423_478719 PBMC +6734 *AVTGIac?YRSNFLF TRAV12-1*01 TRAJ26*01 CASSLGREIGPIEQFF TRBV7-8*01 TRBJ2-1*01 HLA-B*08:01 B2M MHCI RAKFKQLL BZLF1 EBV PMID:34811538 tetramer-sort yes amplicon-seq effector memory T cells T1D T1D_5 chip0423_327366 PBMC +6735 CVLPLAGGTSYGTLTF TRAV26-2*01 TRAJ52*01 CASSLGQAYEQYF TRBV7-8*01 TRBJ2-7*01 HLA-B*08:01 B2M MHCI FLRGRAYGL EBNA3A EBV PMID:34811538 tetramer-sort yes amplicon-seq effector memory T cells T1D T1D_4 chip0423_255749 PBMC +6736 CAVKDTDKLIF TRAV8-1*01 TRAJ34*01 HLA-A*02:01 B2M MHCI YVLDHLIVV BRLF1 EBV PMID:34811538 tetramer-sort yes amplicon-seq effector T cells healthy healthy_4 chip0423_77095 PBMC +6737 CASTSTETVDGYTF TRBV5-4*01 TRBJ1-2*01 HLA-B*08:01 B2M MHCI QAKWRLQTL EBNA3A EBV PMID:34811538 tetramer-sort yes amplicon-seq effector memory T cells T1D T1D_6 chip0423_595274 PBMC +6739 CAVPDAGGTSYGKLTF TRAV21*01 TRAJ52*01 CASSHGGPLVETQYF TRBV4-3*01 TRBJ2-5*01 HLA-A*01:01 B2M MHCI VTDAAHLLI ZNT8 HomoSapiens PMID:34811538 tetramer-sort yes amplicon-seq Naive T cells T1D T1D_5 chip0423_72828 PBMC +6740 CASSIGHSSSYEQYF TRBV19*01 TRBJ2-7*01 HLA-A*01:01 B2M MHCI STNVGSNTY IAPP HomoSapiens PMID:34811538 tetramer-sort yes amplicon-seq Naive T cells T1D T1D_4 chip0423_108138 PBMC +6741 CIVREGGGADGLPF TRAV26-1*01 TRAJ45*01 CASSLAVGEGPQHF TRBV7-9*01 TRBJ1-5*01 HLA-B*08:01 B2M MHCI RAKFKQLL BZLF1 EBV PMID:34811538 tetramer-sort yes amplicon-seq effector T cells T1D T1D_4 chip0423_802842 PBMC +6742 CAASETSYDKVIF TRAV13-1*01 TRAJ50*01 CASSLLGTDTNEQFF TRBV7-9*01 TRBJ2-1*01 HLA-B*08:01 B2M MHCI RAKFKQLL BZLF1 EBV PMID:34811538 tetramer-sort yes amplicon-seq effector memory T cells T1D T1D_5 chip0423_788085 PBMC +6743 CASSILASSYNEQFF TRBV19*01 TRBJ2-1*01 HLA-A*02:01 B2M MHCI LLSLFSLWL ZNT8 HomoSapiens PMID:34811538 tetramer-sort yes amplicon-seq Naive T cells healthy healthy_3 chip0423_204347 PBMC +6744 CAATETSYDKVIF TRAV13-1*01 TRAJ50*01 CASSPPGRNEKLFF TRBV12-3*01,TRBV12-4*01 TRBJ1-4*01 HLA-B*08:01 B2M MHCI RAKFKQLL BZLF1 EBV PMID:34811538 tetramer-sort yes amplicon-seq effector T cells T1D T1D_5 chip0423_445285 PBMC +6745 CALTTYGQNFVF TRAV38-1*01 TRAJ26*01 CSASRDSYEQYF TRBV20-1*01 TRBJ2-7*01 HLA-A*02:01 B2M MHCI YLLEMLWRL LMP1 EBV PMID:34811538 tetramer-sort yes amplicon-seq central memory T cells T1D T1D_4 chip0423_388603 PBMC +6746 CAAQKTSYDKVIF TRAV13-1*01 TRAJ50*01 CASSLTGAGNQPQHF TRBV7-9*01 TRBJ1-5*01 HLA-B*08:01 B2M MHCI RAKFKQLL BZLF1 EBV PMID:34811538 tetramer-sort yes amplicon-seq effector memory T cells T1D T1D_4 chip0423_790301 PBMC +6747 CADHSSYKLIF TRAV23/DV6*01 TRAJ12*01 CASSQYNEQFF TRBV3-1*01 TRBJ2-1*01 HLA-A*02:01 B2M MHCI LLAGIGTVPI PGT HomoSapiens PMID:34811538 tetramer-sort yes amplicon-seq Naive T cells T1D T1D_4 chip0423_331681 PBMC +6748 CAATETSYDKVIF TRAV13-1*01 TRAJ50*01 CASSPPGRNEKLFF TRBV12-3*01,TRBV12-4*01 TRBJ1-4*01 HLA-B*08:01 B2M MHCI RAKFKQLL BZLF1 EBV PMID:34811538 tetramer-sort yes amplicon-seq effector T cells T1D T1D_5 chip0423_430744 PBMC +6749 CASSVTGTEAFF TRBV9*01 TRBJ1-1*01 HLA-B*08:01 B2M MHCI HLKRNIVV GFAP HomoSapiens PMID:34811538 tetramer-sort yes amplicon-seq Naive T cells T1D T1D_5 chip0423_93428 PBMC +6751 CAMTISNFGNEKLTF TRAV12-3*01 TRAJ48*01 CASRLGTGESNQPQHF TRBV5-6*01 TRBJ1-5*01 HLA-A*02:01 B2M MHCI LLAGIGTVPI PGT HomoSapiens PMID:34811538 tetramer-sort yes amplicon-seq Naive T cells T1D T1D_4 chip0423_790503 PBMC +6752 CAASETSYDKVIF TRAV13-1*01 TRAJ50*01 CASSLLGSSGNTIYF TRBV7-9*01 TRBJ1-3*01 HLA-B*08:01 B2M MHCI RAKFKQLL BZLF1 EBV PMID:34811538 tetramer-sort yes amplicon-seq effector memory T cells T1D T1D_5 chip0423_509751 PBMC +6753 CVVSDRNFNKFYF TRAV8-2*01 TRAJ21*01 CAISESLGRDEQYF TRBV10-3*01 TRBJ2-7*01 HLA-A*01:01 B2M MHCI CTELKLSDY NP InfluenzaA PMID:34811538 tetramer-sort yes amplicon-seq transitional T cells between effector and memory populations T1D T1D_6 chip0423_870630 PBMC +6754 CASSLGQAYEQYF TRBV7-8*01 TRBJ2-7*01 HLA-B*08:01 B2M MHCI FLRGRAYGL EBNA3A EBV PMID:34811538 tetramer-sort yes amplicon-seq effector memory T cells T1D T1D_6 chip0423_620794 PBMC +6755 CILPLAGGTSYGKLTF TRAV26-2*01 TRAJ52*01 CASSLGQAYEQYF TRBV7-8*01 TRBJ2-7*01 HLA-B*08:01 B2M MHCI FLRGRAYGL EBNA3A EBV PMID:34811538 tetramer-sort yes amplicon-seq effector memory T cells T1D T1D_6 chip0423_801154 PBMC +6756 CAAMETSYDKVIF TRAV13-1*01 TRAJ50*01 CASSVPATGGTGELFF TRBV9*01 TRBJ2-2*01 HLA-B*08:01 B2M MHCI RAKFKQLL BZLF1 EBV PMID:34811538 tetramer-sort yes amplicon-seq effector T cells T1D T1D_5 chip0423_179276 PBMC +6757 FIVREGGGADRLTV TRAV26-1*01 TRAJ45*01 CSVGGGGTNEKLFF TRBV29-1*01 TRBJ1-4*01 HLA-B*08:01 B2M MHCI RAKFKQLL BZLF1 EBV PMID:34811538 tetramer-sort yes amplicon-seq effector T cells T1D T1D_4 chip0423_842138 PBMC +6758 CASSYDQGAEAFF TRBV6-5*01 TRBJ1-1*01 HLA-A*01:01 B2M MHCI ALASCMGLIY M1 InfluenzaA PMID:34811538 tetramer-sort yes amplicon-seq Naive T cells T1D T1D_5 chip0423_724584 PBMC +6760 CAVSDGEGAQKLVF TRAV8-6*01 TRAJ54*01 CASSLTVLAGPNTEAFF TRBV7-3*01 TRBJ1-1*01 HLA-B*08:01 B2M MHCI RAKFKQLL BZLF1 EBV PMID:34811538 tetramer-sort yes amplicon-seq effector memory T cells T1D T1D_4 chip0423_286175 PBMC +6761 CAASETSYDKVIF TRAV13-1*01 TRAJ50*01 CASSHTQDIPNYGYTF TRBV12-3*01,TRBV12-4*01 TRBJ1-2*01 HLA-B*08:01 B2M MHCI RAKFKQLL BZLF1 EBV PMID:34811538 tetramer-sort yes amplicon-seq effector T cells T1D T1D_5 chip0423_418352 PBMC +6762 CAVNEWAGNMLTF TRAV12-2*01 TRAJ39*01 CASAQGNHYGYTF TRBV6-1*01 TRBJ1-2*01 HLA-A*02:01 B2M MHCI ALGIGILTV MART1 HomoSapiens PMID:34811538 tetramer-sort yes amplicon-seq Naive T cells T1D T1D_6 chip0423_265553 PBMC +6763 CIFSLLGCSSYGKLTF TRAV26-2*01 TRAJ52*01 CASSLGQAYEQYF TRBV7-8*01 TRBJ2-7*01 HLA-B*08:01 B2M MHCI FLRGRAYGL EBNA3A EBV PMID:34811538 tetramer-sort yes amplicon-seq effector memory T cells T1D T1D_6 chip0423_231715 PBMC +6764 LCCGGDNQGGKLIF TRAV3*01 TRAJ23*01 CASSYLGTSGAETQYY TRBV7-9*01 TRBJ2-3*01 HLA-A*02:01 B2M MHCI LLAGIGTVPI PGT HomoSapiens PMID:34811538 tetramer-sort yes amplicon-seq Naive T cells T1D T1D_4 chip0423_105581 PBMC +6765 CAVWRDGAYEQYF TRBV28*01 TRBJ2-7*01 HLA-A*02:01 B2M MHCI YLLEMLWRL LMP1 EBV PMID:34811538 tetramer-sort yes amplicon-seq effector memory T cells T1D T1D_4 chip0423_80400 PBMC +6766 CANSRGPENTEAFF TRBV11-2*01 TRBJ1-1*01 HLA-B*08:01 B2M MHCI RAKFKQLL BZLF1 EBV PMID:34811538 tetramer-sort yes amplicon-seq effector memory T cells T1D T1D_5 chip0423_619923 PBMC +6767 CASAGSQGNLIF TRAV12-2*01 TRAJ42*01 CASSIRSSYEQYF TRBV19*01 TRBJ2-7*01 HLA-A*02:01 B2M MHCI GILGFVFTL M1 InfluenzaA PMID:34811538 tetramer-sort yes amplicon-seq transitional T cells between effector and memory populations T1D T1D_6 chip0423_247572 PBMC +6768 CASVSPGLAVNEQFF TRBV12-3*01,TRBV12-4*01 TRBJ2-1*01 HLA-A*02:01 B2M MHCI LLAGIGTVPI PGT HomoSapiens PMID:34811538 tetramer-sort yes amplicon-seq Naive T cells healthy healthy_4 chip0423_172436 PBMC +6769 CAGTGTYNTDKLIF TRAV25*01 TRAJ34*01 HLA-A*01:01 B2M MHCI STNVGSNTY IAPP HomoSapiens PMID:34811538 tetramer-sort yes amplicon-seq Naive T cells T1D T1D_5 chip0423_33200 PBMC +6770 CAVIGYTGGFKTIF TRAV12-2*01 TRAJ9*01 CASSVVPGENEKLFF TRBV9*01 TRBJ1-4*01 HLA-B*08:01 B2M MHCI RAKFKQLL BZLF1 EBV PMID:34811538 tetramer-sort yes amplicon-seq effector memory T cells T1D T1D_4 chip0423_451125 PBMC +6771 CAVRPDSWGKLQF TRAV8-1*01 TRAJ24*01 CASSQAAGTGELFF TRBV4-1*01 TRBJ2-2*01 HLA-A*02:01 B2M MHCI ILSAHVATA ZNT8 HomoSapiens PMID:34811538 tetramer-sort yes amplicon-seq Naive T cells T1D T1D_4 chip0423_130273 PBMC +6772 CACCVSRAPYEQYV TRBV9*01 TRBJ2-7*01 HLA-B*08:01 B2M MHCI FLRGRAYGL EBNA3A EBV PMID:34811538 tetramer-sort yes amplicon-seq effector T cells T1D T1D_6 chip0423_466909 PBMC +6774 CASSQIAGLDNQPQHF TRBV4-2*01 TRBJ1-5*01 HLA-A*02:01 B2M MHCI LLAGIGTVPI PGT HomoSapiens PMID:34811538 tetramer-sort yes amplicon-seq Naive T cells T1D T1D_6 chip0423_199790 PBMC +6775 CASSLGGGEGASEQFF TRBV7-6*01 TRBJ2-1*01 HLA-B*08:01 B2M MHCI FLRGRAYGL EBNA3A EBV PMID:34811538 tetramer-sort yes amplicon-seq effector memory T cells T1D T1D_4 chip0423_86961 PBMC +6776 CASSLGQAYEQYF TRBV7-8*01 TRBJ2-7*01 HLA-B*08:01 B2M MHCI FLRGRAYGL EBNA3A EBV PMID:34811538 tetramer-sort yes amplicon-seq effector memory T cells T1D T1D_6 chip0423_770602 PBMC +6777 CASSLGQAYEQYF TRBV7-8*01 TRBJ2-7*01 HLA-B*08:01 B2M MHCI FLRGRAYGL EBNA3A EBV PMID:34811538 tetramer-sort yes amplicon-seq effector T cells T1D T1D_6 chip0423_402218 PBMC +6778 CAVSQLSGGGAGGLTF TRAV8-4*01 TRAJ45*01 HLA-B*08:01 B2M MHCI MMIARFKM GAD2 HomoSapiens PMID:34811538 tetramer-sort yes amplicon-seq Naive T cells T1D T1D_5 chip0423_866052 PBMC +6779 CAALRWAAEIIF TRAV27*01 TRAJ30*01 CASSPMIGTSGNEQFF TRBV4-2*01 TRBJ2-1*01 HLA-B*08:01 B2M MHCI RAKFKQLL BZLF1 EBV PMID:34811538 tetramer-sort yes amplicon-seq effector memory T cells T1D T1D_4 chip0423_783641 PBMC +6780 CAEMETSYDKVIF TRAV13-2*01 TRAJ50*01 CASSSLSGGAGNEQFF TRBV7-9*01 TRBJ2-1*01 HLA-B*08:01 B2M MHCI RAKFKQLL BZLF1 EBV PMID:34811538 tetramer-sort yes amplicon-seq effector memory T cells T1D T1D_5 chip0423_182820 PBMC +6781 CASSEPRQLRWQYF TRBV6-1*01 TRBJ2-7*01 HLA-B*08:01 B2M MHCI YLKTNLFL G6PC2 HomoSapiens PMID:34811538 tetramer-sort yes amplicon-seq Naive T cells T1D T1D_6 chip0423_877564 PBMC +6782 CAALETSYDKVIF TRAV13-1*01 TRAJ50*01 CASSSLTGRDSPLHF TRBV7-2*01 TRBJ1-6*01 HLA-B*08:01 B2M MHCI RAKFKQLL BZLF1 EBV PMID:34811538 tetramer-sort yes amplicon-seq effector T cells T1D T1D_5 chip0423_620868 PBMC +6783 CDAFGRANADKSTF TRAV24*01 TRAJ27*01 CASSFLMGGYGYTF TRBV7-9*01 TRBJ1-2*01 HLA-A*01:01 B2M MHCI CTELKLSDY NP InfluenzaA PMID:34811538 tetramer-sort yes amplicon-seq Naive T cells T1D T1D_6 chip0423_220450 PBMC +6784 CASSQVNNPGDGYTF TRBV14*01 TRBJ1-2*01 HLA-B*08:01 B2M MHCI QAKWRLQTL EBNA3A EBV PMID:34811538 tetramer-sort yes amplicon-seq effector memory T cells T1D T1D_4 chip0423_475624 PBMC +6785 CSAGRDGTNEKLFF TRBV29-1*01 TRBJ1-4*01 HLA-A*02:01 B2M MHCI GLCTLVAML BLMF1 EBV PMID:34811538 tetramer-sort yes amplicon-seq effector T cells T1D T1D_6 chip0423_198758 PBMC +6786 CAGAGSGANNLFF TRAV27*01 TRAJ36*01 CASSQFRNQGYQETQYF TRBV4-3*01 TRBJ2-5*01 HLA-B*08:01 B2M MHCI YAKWKLCSA ZNT8 HomoSapiens PMID:34811538 tetramer-sort yes amplicon-seq Naive T cells T1D T1D_6 chip0423_179365 PBMC +6787 CILPLAGGTSYGKLTF TRAV26-2*01 TRAJ52*01 HLA-B*08:01 B2M MHCI FLRGRAYGL EBNA3A EBV PMID:34811538 tetramer-sort yes amplicon-seq effector T cells healthy healthy_4 chip0423_870519 PBMC +6788 CASSFYYSYGYTF TRBV28*01 TRBJ1-2*01 HLA-A*02:01 B2M MHCI LLAGIGTVPI PGT HomoSapiens PMID:34811538 tetramer-sort yes amplicon-seq transitional T cells between effector and memory populations T1D T1D_6 chip0423_772342 PBMC +6789 CAVSDGEGAQKLVF TRAV8-6*01 TRAJ54*01 HLA-B*08:01 B2M MHCI RAKFKQLL BZLF1 EBV PMID:34811538 tetramer-sort yes amplicon-seq effector memory T cells T1D T1D_4 chip0423_274872 PBMC +6790 CAVPGGRPGPLIF TRAV8-3*01 TRAJ42*01 CASSYSSTGEYF TRBV6-2*01,TRBV6-3*01 TRBJ2-7*01 HLA-A*02:01 B2M MHCI YLLEMLWRL LMP1 EBV PMID:34811538 tetramer-sort yes amplicon-seq central memory T cells T1D T1D_4 chip0423_841624 PBMC +6791 CAVGPYIKAGGNKLPF TRAV22*01 TRAJ17*01 CASSLLDSRTGTYEQYF TRBV27*01 TRBJ2-7*01 HLA-B*08:01 B2M MHCI QAKWRLQTL EBNA3A EBV PMID:34811538 tetramer-sort yes amplicon-seq effector memory T cells T1D T1D_6 chip0423_755396 PBMC +6792 CSVGAGGTNEKLFF TRBV29-1*01 TRBJ1-4*01 HLA-A*02:01 B2M MHCI GLCTLVAML BLMF1 EBV PMID:34811538 tetramer-sort yes amplicon-seq effector T cells healthy healthy_4 chip0423_619407 PBMC +6793 CILPLAGGTSYGKLTF TRAV26-2*01 TRAJ52*01 CASSLGQAYEQYF TRBV7-8*01 TRBJ2-7*01 HLA-B*08:01 B2M MHCI FLRGRAYGL EBNA3A EBV PMID:34811538 tetramer-sort yes amplicon-seq effector memory T cells T1D T1D_6 chip0423_499077 PBMC +6794 CAVPRPNDMRF TRAV12-2*01 TRAJ43*01 HLA-A*02:01 B2M MHCI ALWMRLLPL PREINS HomoSapiens PMID:34811538 tetramer-sort yes amplicon-seq Naive T cells T1D T1D_6 chip0423_450137 PBMC +6795 CASSLMAGSTDTQYF TRBV27*01 TRBJ2-3*01 HLA-A*02:01 B2M MHCI YLQQNWWTL LMP1 EBV PMID:34811538 tetramer-sort yes amplicon-seq central memory T cells T1D T1D_4 chip0423_469239 PBMC +6796 CAVNGYQGGKLIF TRAV12-2*01 TRAJ23*01 CASSPQATGPYNEQFF TRBV13*01 TRBJ2-1*01 HLA-A*02:01 B2M MHCI LLAGIGTVPI PGT HomoSapiens PMID:34811538 tetramer-sort yes amplicon-seq Naive T cells T1D T1D_4 chip0423_480562 PBMC +6797 CASSLIGSGTPGNTEAFF TRBV11-1*01 TRBJ1-1*01 HLA-B*08:01 B2M MHCI RAKFKQLL BZLF1 EBV PMID:34811538 tetramer-sort yes amplicon-seq transitional T cells between effector and memory populations T1D T1D_5 chip0423_113531 PBMC +6798 CAAMETSYDKVIF TRAV13-1*01 TRAJ50*01 CATSGPGEGELFF TRBV24-1*01 TRBJ1-4*01 HLA-B*08:01 B2M MHCI RAKFKQLL BZLF1 EBV PMID:34811538 tetramer-sort yes amplicon-seq effector T cells T1D T1D_5 chip0423_845373 PBMC +6799 CAARPGGNTGKLIF TRAV8-1*01 TRAJ37*01 CASSQDFgg?QGNTEAFF TRBV4-1*01 TRBJ1-1*01 HLA-B*08:01 B2M MHCI YAYAKWKL ZNT8 HomoSapiens PMID:34811538 tetramer-sort yes amplicon-seq Naive T cells T1D T1D_6 chip0423_89048 PBMC +6800 CSAIEFRDPNQPQHF TRBV20-1*01 TRBJ1-5*01 HLA-A*02:01 B2M MHCI YLLEMLWRL LMP1 EBV PMID:34811538 tetramer-sort yes amplicon-seq central memory T cells T1D T1D_4 chip0423_580197 PBMC +6801 CALCDRGSTLGRLYF TRAV19*01 TRAJ18*01 CASSLGREIGPIEQFF TRBV7-8*01 TRBJ2-1*01 HLA-B*08:01 B2M MHCI RAKFKQLL BZLF1 EBV PMID:34811538 tetramer-sort yes amplicon-seq effector memory T cells T1D T1D_5 chip0423_27295 PBMC +6802 CALTTYGQNFVF TRAV38-1*01 TRAJ26*01 CSASRDSYEQYF TRBV20-1*01 TRBJ2-7*01 HLA-A*02:01 B2M MHCI YLLEMLWRL LMP1 EBV PMID:34811538 tetramer-sort yes amplicon-seq central memory T cells T1D T1D_4 chip0423_473130 PBMC +6803 CAASGDYGGAPNKLLF TRAV13-1*01 TRAJ32*01 CASSQYGYEQYF TRBV4-2*01 TRBJ2-7*01 HLA-A*02:01 B2M MHCI ALGIGILTV MART1 HomoSapiens PMID:34811538 tetramer-sort yes amplicon-seq Naive T cells healthy healthy_3 chip0423_844415 PBMC +6804 CALHSRDDTVIF TRAV19*01 TRAJ30*01 CASSFGLAGTYEQYF TRBV12-3*01,TRBV12-4*01 TRBJ2-7*01 HLA-A*01:01 B2M MHCI VTDAAHLLI ZNT8 HomoSapiens PMID:34811538 tetramer-sort yes amplicon-seq Naive T cells T1D T1D_6 chip0423_323915 PBMC +6805 CSAGRDGTNEKLFF TRBV29-1*01 TRBJ1-4*01 HLA-A*02:01 B2M MHCI GLCTLVAML BLMF1 EBV PMID:34811538 tetramer-sort yes amplicon-seq effector memory T cells T1D T1D_6 chip0423_883026 PBMC +6806 CASSLVQGVHNEQFF TRBV7-9*01 TRBJ2-1*01 HLA-B*08:01 B2M MHCI RAKFKQLL BZLF1 EBV PMID:34811538 tetramer-sort yes amplicon-seq effector T cells T1D T1D_5 chip0423_765752 PBMC +6807 CAMSLSNFGNEKLTF TRAV12-3*01 TRAJ48*01 CASSQEGQGDGAFF TRBV28*01 TRBJ1-1*01 HLA-A*02:01 B2M MHCI LLAGIGTVPI PGT HomoSapiens PMID:34811538 tetramer-sort yes amplicon-seq Naive T cells T1D T1D_6 chip0423_99436 PBMC +6808 CVVYHNTDKLIF TRAV12-1*01 TRAJ34*01 CSAREGWNELEETQYF TRBV20-1*01 TRBJ2-5*01 HLA-A*01:01 B2M MHCI LVSDGGPNLY PB1 InfluenzaA PMID:34811538 tetramer-sort yes amplicon-seq Naive T cells T1D T1D_6 chip0423_553093 PBMC +6809 CASSLQDSSYEQYF TRBV5-6*01 TRBJ2-7*01 HLA-B*08:01 B2M MHCI RAKFKQLL BZLF1 EBV PMID:34811538 tetramer-sort yes amplicon-seq effector memory T cells healthy healthy_4 chip0423_525521 PBMC +6810 CAATETSYDKVIF TRAV13-1*01 TRAJ50*01 CASSSLTNTEAFF TRBV7-9*01 TRBJ1-1*01 HLA-B*08:01 B2M MHCI RAKFKQLL BZLF1 EBV PMID:34811538 tetramer-sort yes amplicon-seq effector T cells T1D T1D_5 chip0423_489825 PBMC +6811 CIAVTStt??ccGNQFYF TRAV26-1*01 TRAJ49*01 CSAGRDGTNEKLFF TRBV29-1*01 TRBJ1-4*01 HLA-A*02:01 B2M MHCI GLCTLVAML BLMF1 EBV PMID:34811538 tetramer-sort yes amplicon-seq effector memory T cells T1D T1D_6 chip0423_95215 PBMC +6812 CAVNIRFSGGYNKLIF TRAV12-2*01 TRAJ4*01 CASSPRGMNTEAFF TRBV19*01 TRBJ1-1*01 HLA-B*08:01 B2M MHCI RAKFKQLL BZLF1 EBV PMID:34811538 tetramer-sort yes amplicon-seq effector T cells T1D T1D_5 chip0423_74460 PBMC +6813 CAVTMVgg??gaNTPLVF TRAV12-2*01 TRAJ29*01 LCQP*SA??gGFTEAFF TRBV2*01 TRBJ1-1*01 HLA-A*02:01 B2M MHCI MVWGPDPLYV DUF5119 HomoSapiens PMID:34811538 tetramer-sort yes amplicon-seq Naive T cells healthy healthy_3 chip0423_849838 PBMC +6814 CAEIMNSGYSTLTF TRAV5*01 TRAJ11*01 CASSLGQAYEQYF TRBV7-8*01 TRBJ2-7*01 HLA-B*08:01 B2M MHCI FLRGRAYGL EBNA3A EBV PMID:34811538 tetramer-sort yes amplicon-seq effector memory T cells T1D T1D_6 chip0423_655668 PBMC +6815 CAMTGSNFGNEKLTF TRAV12-3*01 TRAJ48*01 CSAWIQETQYF TRBV20-1*01 TRBJ2-5*01 HLA-A*02:01 B2M MHCI LLAGIGTVPI PGT HomoSapiens PMID:34811538 tetramer-sort yes amplicon-seq Naive T cells T1D T1D_4 chip0423_686093 PBMC +6816 CAMSGFHQTGANNLFF TRAV12-3*01 TRAJ36*01 HLA-B*08:01 B2M MHCI QAKWRLQTL EBNA3A EBV PMID:34811538 tetramer-sort yes amplicon-seq effector memory T cells T1D T1D_6 chip0423_167895 PBMC +6817 CAASETSYDKVIF TRAV13-1*01 TRAJ50*01 CASSLFPPSg?gGTSTDTQYF TRBV11-1*01 TRBJ2-3*01 HLA-B*08:01 B2M MHCI RAKFKQLL BZLF1 EBV PMID:34811538 tetramer-sort yes amplicon-seq effector memory T cells T1D T1D_5 chip0423_790758 PBMC +6818 CASSYSSTGEYF TRBV6-2*01,TRBV6-3*01 TRBJ2-7*01 HLA-A*02:01 B2M MHCI YLLEMLWRL LMP1 EBV PMID:34811538 tetramer-sort yes amplicon-seq central memory T cells T1D T1D_4 chip0423_452353 PBMC +6819 CAATETSYDKVIF TRAV13-1*01 TRAJ50*01 CASSPLGSNEKLFF TRBV7-9*01 TRBJ1-4*01 HLA-B*08:01 B2M MHCI RAKFKQLL BZLF1 EBV PMID:34811538 tetramer-sort yes amplicon-seq effector memory T cells T1D T1D_5 chip0423_415093 PBMC +6820 CASSSTGGGDQPQHF TRBV7-9*01 TRBJ1-5*01 HLA-B*08:01 B2M MHCI RAKFKQLL BZLF1 EBV PMID:34811538 tetramer-sort yes amplicon-seq effector T cells T1D T1D_4 chip0423_200498 PBMC +6821 CILPLAGGTSYGKLTF TRAV26-2*01 TRAJ52*01 CASSLGQAYEQYF TRBV7-8*01 TRBJ2-7*01 HLA-B*08:01 B2M MHCI FLRGRAYGL EBNA3A EBV PMID:34811538 tetramer-sort yes amplicon-seq effector memory T cells T1D T1D_6 chip0423_378901 PBMC +6822 CALLWGDAGFQKLVF TRAV16*01 TRAJ8*01 CASSVDPGNTEAFF TRBV9*01 TRBJ1-1*01 HLA-A*01:01 B2M MHCI HSNLNDATY NP InfluenzaA PMID:34811538 tetramer-sort yes amplicon-seq Naive T cells T1D T1D_6 chip0423_571889 PBMC +6823 CSAGRDGTNEKLFF TRBV29-1*01 TRBJ1-4*01 HLA-A*02:01 B2M MHCI GLCTLVAML BLMF1 EBV PMID:34811538 tetramer-sort yes amplicon-seq effector memory T cells T1D T1D_6 chip0423_294463 PBMC +6824 CIVRVGVSGAGGYQLTF TRAV26-1*01 TRAJ28*01 CSVGSGEGAEQYF TRBV29-1*01 TRBJ2-7*01 HLA-B*08:01 B2M MHCI RAKFKQLL BZLF1 EBV PMID:34811538 tetramer-sort yes amplicon-seq effector memory T cells T1D T1D_4 chip0423_54777 PBMC +6825 CILPLAGGTSYGKLTF TRAV26-2*01 TRAJ52*01 CASSLGQAYEQYF TRBV7-8*01 TRBJ2-7*01 HLA-B*08:01 B2M MHCI FLRGRAYGL EBNA3A EBV PMID:34811538 tetramer-sort yes amplicon-seq effector memory T cells T1D T1D_6 chip0423_512846 PBMC +6826 CAVSDGEGAQKLVF TRAV8-6*01 TRAJ54*01 CASSLTVLAGPNTEAFF TRBV7-3*01 TRBJ1-1*01 HLA-B*08:01 B2M MHCI RAKFKQLL BZLF1 EBV PMID:34811538 tetramer-sort yes amplicon-seq effector memory T cells T1D T1D_4 chip0423_723072 PBMC +6827 CAVSAGEGPPPPAF TRAV8-6*01 TRAJ54*01 CASSQVNNPGDGYTF TRBV14*01 TRBJ1-2*01 HLA-B*08:01 B2M MHCI QAKWRLQTL EBNA3A EBV PMID:34811538 tetramer-sort yes amplicon-seq effector memory T cells T1D T1D_4 chip0423_232417 PBMC +6828 CILPLAGGTNYGKLTF TRAV26-2*01 TRAJ52*01 CASSLGQAYEQYF TRBV7-8*01 TRBJ2-7*01 HLA-B*08:01 B2M MHCI FLRGRAYGL EBNA3A EBV PMID:34811538 tetramer-sort yes amplicon-seq effector memory T cells T1D T1D_4 chip0423_182018 PBMC +6829 CAISPSNFGNEKLTF TRAV12-3*01 TRAJ48*01 CASNAIITDRTADTISYNEQFF TRBV7-8*01 TRBJ2-1*01 HLA-A*02:01 B2M MHCI LLAGIGTVPI PGT HomoSapiens PMID:34811538 tetramer-sort yes amplicon-seq Naive T cells T1D T1D_6 chip0423_579556 PBMC +6830 CASSDIREGQGEAFF TRBV10-2*01 TRBJ1-1*01 HLA-B*08:01 B2M MHCI QAKWRLQTL EBNA3A EBV PMID:34811538 tetramer-sort yes amplicon-seq central memory T cells T1D T1D_6 chip0423_217822 PBMC +6831 CSAGRDGTNEKLFF TRBV29-1*01 TRBJ1-4*01 HLA-A*02:01 B2M MHCI GLCTLVAML BLMF1 EBV PMID:34811538 tetramer-sort yes amplicon-seq effector memory T cells T1D T1D_6 chip0423_132577 PBMC +6832 RVCESRgg??gaSSTLTF TRAV3*01 TRAJ11*01 CASSADTSSYNEQFF TRBV7-6*01 TRBJ2-1*01 HLA-A*02:01 B2M MHCI GILGFVFTL M1 InfluenzaA PMID:34811538 tetramer-sort yes amplicon-seq Naive T cells T1D T1D_6 chip0423_834540 PBMC +6833 CASSSTGGGDQPQHF TRBV7-9*01 TRBJ1-5*01 HLA-B*08:01 B2M MHCI RAKFKQLL BZLF1 EBV PMID:34811538 tetramer-sort yes amplicon-seq effector memory T cells T1D T1D_4 chip0423_802594 PBMC +6834 CAETASNQAGTALLF TRAV13-2*01 TRAJ15*01 HLA-A*01:01 B2M MHCI CTELKLSDY NP InfluenzaA PMID:34811538 tetramer-sort yes amplicon-seq transitional T cells between effector and memory populations healthy healthy_3 chip0423_734846 PBMC +6835 RIVREGGGADGLTF TRAV26-1*01 TRAJ45*01 CASSLAVGEGPQHF TRBV7-9*01 TRBJ1-5*01 HLA-B*08:01 B2M MHCI RAKFKQLL BZLF1 EBV PMID:34811538 tetramer-sort yes amplicon-seq effector memory T cells T1D T1D_4 chip0423_157425 PBMC +6836 CILPLAGGTSYGKLTF TRAV26-2*01 TRAJ52*01 CASSLGQAYEQYF TRBV7-8*01 TRBJ2-7*01 HLA-B*08:01 B2M MHCI FLRGRAYGL EBNA3A EBV PMID:34811538 tetramer-sort yes amplicon-seq effector memory T cells T1D T1D_6 chip0423_416011 PBMC +6837 CANSMDSNYQLIW TRAV38-1*01 TRAJ33*01 CASSFLGLARDEQFF TRBV7-2*01 TRBJ2-1*01 HLA-A*02:01 B2M MHCI RGPGRAFVTI GP160 HIV-1 PMID:34811538 tetramer-sort yes amplicon-seq Naive T cells T1D T1D_6 chip0423_725308 PBMC +6838 CAASDRLPGGSYIPTF TRAV13-1*01 TRAJ6*01 CSATNQYDGPDTEAFF TRBV20-1*01 TRBJ1-1*01 HLA-B*08:01 B2M MHCI RAKFKQLL BZLF1 EBV PMID:34811538 tetramer-sort yes amplicon-seq effector memory T cells T1D T1D_4 chip0423_500879 PBMC +6839 CAATETSYDKVIF TRAV13-1*01 TRAJ50*01 CASSQVNNPGDGYTF TRBV14*01 TRBJ1-2*01 HLA-B*08:01 B2M MHCI QAKWRLQTL EBNA3A EBV PMID:34811538 tetramer-sort yes amplicon-seq effector memory T cells T1D T1D_4 chip0423_416953 PBMC +6840 CASQGGSQGNLIF TRAV20*01 TRAJ42*01 HLA-A*02:01 B2M MHCI TLLANVTAV VP6 RotavirusA PMID:34811538 tetramer-sort yes amplicon-seq transitional T cells between effector and memory populations T1D T1D_6 chip0423_146879 PBMC +6841 CIVREGGGADGLTF TRAV26-1*01 TRAJ45*01 CASSLAVGEGPQHF TRBV7-9*01 TRBJ1-5*01 HLA-B*08:01 B2M MHCI RAKFKQLL BZLF1 EBV PMID:34811538 tetramer-sort yes amplicon-seq effector T cells T1D T1D_4 chip0423_626800 PBMC +6842 CAMSASNFGNEKLTF TRAV12-3*01 TRAJ48*01 CASSLPSGQGRETQYF TRBV5-6*01 TRBJ2-5*01 HLA-A*02:01 B2M MHCI LLAGIGTVPI PGT HomoSapiens PMID:34811538 tetramer-sort yes amplicon-seq Naive T cells T1D T1D_6 chip0423_596278 PBMC +6843 CASSYGVGYGYTF TRBV7-2*01 TRBJ1-2*01 HLA-B*08:01 B2M MHCI RAKFKQLL BZLF1 EBV PMID:34811538 tetramer-sort yes amplicon-seq transitional T cells between effector and memory populations T1D T1D_6 chip0423_58350 PBMC +6844 CILPLAGGTSYGKLTF TRAV26-2*01 TRAJ52*01 CASSLGQAYEQYF TRBV7-8*01 TRBJ2-7*01 HLA-B*08:01 B2M MHCI FLRGRAYGL EBNA3A EBV PMID:34811538 tetramer-sort yes amplicon-seq effector T cells T1D T1D_6 chip0423_783139 PBMC +6845 CASSLGQAYEQYF TRBV7-8*01 TRBJ2-7*01 HLA-B*08:01 B2M MHCI FLRGRAYGL EBNA3A EBV PMID:34811538 tetramer-sort yes amplicon-seq effector memory T cells T1D T1D_6 chip0423_324545 PBMC +6846 CIVREGGGADGLTF TRAV26-1*01 TRAJ45*01 CASSLAVGEGPQHF TRBV7-9*01 TRBJ1-5*01 HLA-B*08:01 B2M MHCI RAKFKQLL BZLF1 EBV PMID:34811538 tetramer-sort yes amplicon-seq effector memory T cells T1D T1D_4 chip0423_502005 PBMC +6848 CSATRPGNIQYF TRBV29-1*01 TRBJ2-4*01 HLA-B*08:01 B2M MHCI RAKFKQLL BZLF1 EBV PMID:34811538 tetramer-sort yes amplicon-seq effector T cells T1D T1D_4 chip0423_540677 PBMC +6849 CAAAETSYDKVIF TRAV13-1*01 TRAJ50*01 CASQLAGGTGELFF TRBV24-1*01 TRBJ2-2*01 HLA-B*08:01 B2M MHCI RAKFKQLL BZLF1 EBV PMID:34811538 tetramer-sort yes amplicon-seq effector T cells T1D T1D_5 chip0423_363831 PBMC +6850 CASQLAGGTGELFF TRBV24-1*01 TRBJ2-2*01 HLA-B*08:01 B2M MHCI RAKFKQLL BZLF1 EBV PMID:34811538 tetramer-sort yes amplicon-seq effector T cells T1D T1D_5 chip0423_651855 PBMC +6851 CAVNSGNTPLVF TRAV1-2*01 TRAJ29*01 CASSQVNNPGDGYTF TRBV14*01 TRBJ1-2*01 HLA-B*08:01 B2M MHCI QAKWRLQTL EBNA3A EBV PMID:34811538 tetramer-sort yes amplicon-seq effector memory T cells T1D T1D_4 chip0423_543367 PBMC +6853 CAASETSYDKVIF TRAV13-1*01 TRAJ50*01 CASTSLGDGSGNEQFF TRBV7-9*01 TRBJ2-1*01 HLA-B*08:01 B2M MHCI RAKFKQLL BZLF1 EBV PMID:34811538 tetramer-sort yes amplicon-seq effector T cells T1D T1D_5 chip0423_190886 PBMC +6854 CASSLGGREGASGQFF TRBV7-6*01 TRBJ2-1*01 HLA-B*08:01 B2M MHCI FLRGRAYGL EBNA3A EBV PMID:34811538 tetramer-sort yes amplicon-seq transitional T cells between effector and memory populations T1D T1D_4 chip0423_170091 PBMC +6855 CAASDRLPGGSYIPTF TRAV39*01,TRAV23/DV6*01 TRAJ6*01 CSATNQYDGPDTEAFF TRBV20-1*01 TRBJ1-1*01 HLA-B*08:01 B2M MHCI RAKFKQLL BZLF1 EBV PMID:34811538 tetramer-sort yes amplicon-seq transitional T cells between effector and memory populations T1D T1D_4 chip0423_583368 PBMC +6856 CILPLAGGTSYGKLTF TRAV26-2*01 TRAJ52*01 CASSLGQAYEQYF TRBV7-8*01 TRBJ2-7*01 HLA-B*08:01 B2M MHCI FLRGRAYGL EBNA3A EBV PMID:34811538 tetramer-sort yes amplicon-seq effector T cells T1D T1D_6 chip0423_199832 PBMC +6857 CAVKEGGKLIF TRAV8-1*01 TRAJ23*01 HLA-A*02:01 B2M MHCI YVLDHLIVV BRLF1 EBV PMID:34811538 tetramer-sort yes amplicon-seq effector memory T cells healthy healthy_3 chip0423_152297 PBMC +6858 CAASENFGNEKLTF TRAV13-1*01 TRAJ48*01 HLA-B*08:01 B2M MHCI RAKFKQLL BZLF1 EBV PMID:34811538 tetramer-sort yes amplicon-seq effector memory T cells T1D T1D_4 chip0423_814886 PBMC +6859 CALRDMEYGNKLVF TRAV16*01 TRAJ47*01 CARRLLASGGPNEQYF TRBV7-3*01 TRBJ2-7*01 HLA-B*08:01 B2M MHCI RAKFKQLL BZLF1 EBV PMID:34811538 tetramer-sort yes amplicon-seq effector memory T cells T1D T1D_4 chip0423_810050 PBMC +6860 CASRPRQGGSPLHF TRBV28*01 TRBJ1-6*01 HLA-A*02:01 B2M MHCI ALAGIGILTV MART1 HomoSapiens PMID:34811538 tetramer-sort yes amplicon-seq Naive T cells T1D T1D_6 chip0423_752647 PBMC +6861 CAMREGGTAGGTSYGKLTF TRAV14/DV4*01 TRAJ52*01 CASSMFGAAARAFF TRBV19*01 TRBJ1-1*01 HLA-A*02:01 B2M MHCI VVTGVLVYL ZNT8 HomoSapiens PMID:34811538 tetramer-sort yes amplicon-seq transitional T cells between effector and memory populations T1D T1D_4 chip0423_377319 PBMC +6862 CASSLTVLAGPNTEAFF TRBV7-3*01 TRBJ1-1*01 HLA-B*08:01 B2M MHCI RAKFKQLL BZLF1 EBV PMID:34811538 tetramer-sort yes amplicon-seq effector T cells T1D T1D_4 chip0423_375634 PBMC +6863 CASSLAVGEGPQHF TRBV7-9*01 TRBJ1-5*01 HLA-B*08:01 B2M MHCI RAKFKQLL BZLF1 EBV PMID:34811538 tetramer-sort yes amplicon-seq effector memory T cells tet_neg chip0423_106635 PBMC +6864 CAATETSYDKVIF TRAV13-1*01 TRAJ50*01 CASSPPGRNEKLFF TRBV12-3*01,TRBV12-4*01 TRBJ1-4*01 HLA-B*08:01 B2M MHCI RAKFKQLL BZLF1 EBV PMID:34811538 tetramer-sort yes amplicon-seq effector T cells T1D T1D_5 chip0423_443353 PBMC +6865 CASSSTRAGNQPQHF TRBV7-9*01 TRBJ1-5*01 HLA-B*08:01 B2M MHCI RAKFKQLL BZLF1 EBV PMID:34811538 tetramer-sort yes amplicon-seq effector memory T cells T1D T1D_4 chip0423_801601 PBMC +6866 CAAIGPTASKLTF TRAV13-1*01 TRAJ44*01 CASSTGYYGYTF TRBV19*01 TRBJ1-2*01 HLA-A*02:01 B2M MHCI GILGFVFTL M1 InfluenzaA PMID:34811538 tetramer-sort yes amplicon-seq transitional T cells between effector and memory populations T1D T1D_4 chip0423_149800 PBMC +6867 CASSLGQAYEQYF TRBV7-8*01 TRBJ2-7*01 HLA-B*08:01 B2M MHCI FLRGRAYGL EBNA3A EBV PMID:34811538 tetramer-sort yes amplicon-seq effector memory T cells T1D T1D_6 chip0423_523061 PBMC +6868 CVLRGFCac??ttGAGGLTF TRAV8-2*01 TRAJ45*01 HLA-B*08:01 B2M MHCI FLRGRAYGL EBNA3A EBV PMID:34811538 tetramer-sort yes amplicon-seq effector memory T cells T1D T1D_4 chip0423_670903 PBMC +6869 CAVPGGSQGNLIF TRAV8-3*01 TRAJ42*01 CASSYSSTGEYF TRBV6-2*01,TRBV6-3*01 TRBJ2-7*01 HLA-A*02:01 B2M MHCI YLLEMLWRL LMP1 EBV PMID:34811538 tetramer-sort yes amplicon-seq central memory T cells T1D T1D_4 chip0423_177600 PBMC +6870 CAAAETSYDKVIF TRAV13-1*01 TRAJ50*01 CASSQLGEAKEGTEAFF TRBV11-1*01 TRBJ1-1*01 HLA-B*08:01 B2M MHCI RAKFKQLL BZLF1 EBV PMID:34811538 tetramer-sort yes amplicon-seq effector memory T cells T1D T1D_5 chip0423_98382 PBMC +6871 CATASGSARQLTF TRAV14/DV4*01 TRAJ22*01 CASRETGQETQYF TRBV27*01 TRBJ2-5*01 HLA-B*08:01 B2M MHCI HARIKLKV PTPRN HomoSapiens PMID:34811538 tetramer-sort yes amplicon-seq Naive T cells T1D T1D_5 chip0423_15428 PBMC +6872 CAVEVDKLIF TRAV41*01 TRAJ34*01 CASSLWYRVETQYF TRBV5-6*01 TRBJ2-5*01 HLA-A*01:01 B2M MHCI CTELKLSDY NP InfluenzaA PMID:34811538 tetramer-sort yes amplicon-seq central memory T cells healthy healthy_3 chip0423_210604 PBMC +6873 CASSWGAGTQETQYF TRBV27*01 TRBJ2-5*01 HLA-B*08:01 B2M MHCI NLIFKWIL G6PC2 HomoSapiens PMID:34811538 tetramer-sort yes amplicon-seq Naive T cells T1D T1D_5 chip0423_105968 PBMC +6875 CASSPWTTNTGELFF TRBV27*01 TRBJ2-2*01 HLA-A*02:01 B2M MHCI GILGFVFTL M1 InfluenzaA PMID:34811538 tetramer-sort yes amplicon-seq central memory T cells healthy healthy_4 chip0423_620010 PBMC +6876 CILPLAGGTSYGKLTF TRAV26-2*01 TRAJ52*01 CASSLGQAYEQYF TRBV7-8*01 TRBJ2-7*01 HLA-B*08:01 B2M MHCI FLRGRAYGL EBNA3A EBV PMID:34811538 tetramer-sort yes amplicon-seq effector memory T cells T1D T1D_6 chip0423_603609 PBMC +6877 CAVRDDYGQNFVF TRAV3*01 TRAJ26*01 CASSQDSHSAYEQYF TRBV4-1*01 TRBJ2-7*01 HLA-B*08:01 B2M MHCI RAKFKQLL BZLF1 EBV PMID:34811538 tetramer-sort yes amplicon-seq effector memory T cells T1D T1D_5 chip0423_577059 PBMC +6878 CSARDRGLYDYGYTF TRBV20-1*01 TRBJ1-2*01 HLA-A*02:01 B2M MHCI LLAGIGTVPI PGT HomoSapiens PMID:34811538 tetramer-sort yes amplicon-seq Naive T cells T1D T1D_6 chip0423_553059 PBMC +6879 CAGQVAGNNRKLIW TRAV17*01 TRAJ38*01 CASSFSGSDSYEQYF TRBV12-3*01,TRBV12-4*01 TRBJ2-7*01 HLA-B*08:01 B2M MHCI RAKFKQLL BZLF1 EBV PMID:34811538 tetramer-sort yes amplicon-seq effector memory T cells T1D T1D_5 chip0423_14501 PBMC +6880 CILPLAGGTSYGKLTF TRAV26-2*01 TRAJ52*01 CSVEGGQGEGRQYF TRBV29-1*01 TRBJ2-7*01 HLA-A*02:01 B2M MHCI LLAGIGTVPI PGT HomoSapiens PMID:34811538 tetramer-sort yes amplicon-seq Naive T cells healthy healthy_3 chip0423_773034 PBMC +6881 CASSSPTVHSGANVLTF TRBV9*01 TRBJ2-6*01 HLA-A*02:01 B2M MHCI RQFGPDWIVA ADH HomoSapiens PMID:34811538 tetramer-sort yes amplicon-seq transitional T cells between effector and memory populations T1D T1D_6 chip0423_822379 PBMC +6882 CAAGETSYDKVIF TRAV13-1*01 TRAJ50*01 CASSLLGSQNTEAFF TRBV7-9*01 TRBJ1-1*01 HLA-B*08:01 B2M MHCI RAKFKQLL BZLF1 EBV PMID:34811538 tetramer-sort yes amplicon-seq transitional T cells between effector and memory populations T1D T1D_5 chip0423_754667 PBMC +6883 CASSSLSGGAGNEQFF TRBV7-9*01 TRBJ2-1*01 HLA-B*08:01 B2M MHCI RAKFKQLL BZLF1 EBV PMID:34811538 tetramer-sort yes amplicon-seq effector memory T cells T1D T1D_5 chip0423_68954 PBMC +6884 CASQLAGGTGELFF TRBV24-1*01 TRBJ2-2*01 HLA-B*08:01 B2M MHCI RAKFKQLL BZLF1 EBV PMID:34811538 tetramer-sort yes amplicon-seq effector memory T cells T1D T1D_5 chip0423_24253 PBMC +6885 CAMSRSNFGHEKLTF TRAV12-3*01 TRAJ48*01 HLA-A*02:01 B2M MHCI LLAGIGTVPI PGT HomoSapiens PMID:34811538 tetramer-sort yes amplicon-seq Naive T cells T1D T1D_4 chip0423_704617 PBMC +6886 CALTTYGQNFVF TRAV38-1*01 TRAJ26*01 CSASRVSYEQYF TRBV20-1*01 TRBJ2-7*01 HLA-A*02:01 B2M MHCI YLLEMLWRL LMP1 EBV PMID:34811538 tetramer-sort yes amplicon-seq central memory T cells T1D T1D_4 chip0423_221025 PBMC +6887 CAMREGGRDDKIIF TRAV14/DV4*01 TRAJ30*01 CASSSPGct??ggGSDEQNF TRBV7-3*01 TRBJ2-7*01 HLA-B*08:01 B2M MHCI EGHLKRNIV GFAP HomoSapiens PMID:34811538 tetramer-sort yes amplicon-seq Naive T cells T1D T1D_6 chip0423_846494 PBMC +6888 CAASKIEga?GGADGLTF TRAV23/DV6*01 TRAJ45*01 CASSLGQAYEQYF TRBV7-8*01 TRBJ2-7*01 HLA-B*08:01 B2M MHCI FLRGRAYGL EBNA3A EBV PMID:34811538 tetramer-sort yes amplicon-seq effector memory T cells T1D T1D_6 chip0423_629486 PBMC +6889 CAVNSGTYKYIF TRAV12-2*01 TRAJ40*01 CASSIQSYNEQFF TRBV27*01 TRBJ2-1*01 HLA-A*01:01 B2M MHCI LTSLTILQLY G6PC2 HomoSapiens PMID:34811538 tetramer-sort yes amplicon-seq Naive T cells T1D T1D_5 chip0423_417609 PBMC +6890 CASSQTFPNTGELFF TRBV3-1*01 TRBJ2-2*01 HLA-B*08:01 B2M MHCI RAKFKQLL BZLF1 EBV PMID:34811538 tetramer-sort yes amplicon-seq effector memory T cells healthy healthy_4 chip0423_620858 PBMC +6891 CASSPSLGEYNEQFF TRBV18*01 TRBJ2-1*01 HLA-B*08:01 B2M MHCI RAKFKQLL BZLF1 EBV PMID:34811538 tetramer-sort yes amplicon-seq effector memory T cells T1D T1D_4 chip0423_451936 PBMC +6892 CASSDIREGQGEAFF TRBV10-2*01 TRBJ1-1*01 HLA-B*08:01 B2M MHCI QAKWRLQTL EBNA3A EBV PMID:34811538 tetramer-sort yes amplicon-seq transitional T cells between effector and memory populations T1D T1D_6 chip0423_286071 PBMC +6893 CASSLALRGPRETQYF TRBV5-1*01 TRBJ2-5*01 HLA-A*02:01 B2M MHCI LLAGIGTVPI PGT HomoSapiens PMID:34811538 tetramer-sort yes amplicon-seq Naive T cells healthy healthy_4 chip0423_274494 PBMC +6894 CAYGQNFVF TRAV8-3*01 TRAJ26*01 CASSADSDYGYTF TRBV9*01 TRBJ1-2*01 HLA-A*02:01 B2M MHCI YLLEMLWRL LMP1 EBV PMID:34811538 tetramer-sort yes amplicon-seq effector memory T cells T1D T1D_4 chip0423_851989 PBMC +6895 CAAAETSYDKVIF TRAV13-1*01 TRAJ50*01 CASQLAGGTGELFF TRBV24-1*01 TRBJ2-2*01 HLA-B*08:01 B2M MHCI RAKFKQLL BZLF1 EBV PMID:34811538 tetramer-sort yes amplicon-seq effector memory T cells T1D T1D_5 chip0423_555452 PBMC +6896 CASSPQWGGLAGELFF TRBV4-1*01 TRBJ2-2*01 HLA-B*08:01 B2M MHCI CPLSKILL LMP2A EBV PMID:34811538 tetramer-sort yes amplicon-seq central memory T cells T1D T1D_6 chip0423_649137 PBMC +6897 CASSPGLAGAAQTQYF TRBV3-1*01 TRBJ2-5*01 HLA-A*02:01 B2M MHCI YVLDHLIVV BRLF1 EBV PMID:34811538 tetramer-sort yes amplicon-seq effector memory T cells T1D T1D_4 chip0423_530943 PBMC +6898 CAASETSYDKVIF TRAV13-1*01 TRAJ50*01 CASSSTGGGDQPQHF TRBV7-9*01 TRBJ1-5*01 HLA-B*08:01 B2M MHCI RAKFKQLL BZLF1 EBV PMID:34811538 tetramer-sort yes amplicon-seq effector T cells T1D T1D_4 chip0423_269528 PBMC +6899 CGADATSGTYKYIF TRAV34*01 TRAJ40*01 CSVGSGEGYEQYF TRBV29-1*01 TRBJ2-7*01 HLA-B*08:01 B2M MHCI RAKFKQLL BZLF1 EBV PMID:34811538 tetramer-sort yes amplicon-seq effector memory T cells T1D T1D_4 chip0423_182565 PBMC +6900 CAAQETSYDKVIF TRAV13-1*01 TRAJ50*01 CASTQVDRPNYGYTF TRBV7-9*01 TRBJ1-2*01 HLA-B*08:01 B2M MHCI RAKFKQLL BZLF1 EBV PMID:34811538 tetramer-sort yes amplicon-seq effector T cells T1D T1D_5 chip0423_733134 PBMC +6901 CAGSKDTSMNTQYF TRBV28*01 TRBJ2-3*01 HLA-B*08:01 B2M MHCI QAKWRLQTL EBNA3A EBV PMID:34811538 tetramer-sort yes amplicon-seq transitional T cells between effector and memory populations T1D T1D_6 chip0423_712986 PBMC +6902 CIVREGGGADGLTF TRAV26-1*01 TRAJ45*01 HLA-B*08:01 B2M MHCI RAKFKQLL BZLF1 EBV PMID:34811538 tetramer-sort yes amplicon-seq effector memory T cells T1D T1D_4 chip0423_369435 PBMC +6904 CASQLAGGTGELFF TRBV24-1*01 TRBJ2-2*01 HLA-B*08:01 B2M MHCI RAKFKQLL BZLF1 EBV PMID:34811538 tetramer-sort yes amplicon-seq effector T cells T1D T1D_5 chip0423_597270 PBMC +6905 CIVREGGGADGLTF TRAV26-1*01 TRAJ45*01 CASSLAVGEGPQHF TRBV7-9*01 TRBJ1-5*01 HLA-B*08:01 B2M MHCI RAKFKQLL BZLF1 EBV PMID:34811538 tetramer-sort yes amplicon-seq effector memory T cells T1D T1D_4 chip0423_150683 PBMC +6906 CAASETSYDKVIF TRAV13-1*01 TRAJ50*01 CASSELGEGGNTIYF TRBV7-9*01 TRBJ1-3*01 HLA-B*08:01 B2M MHCI RAKFKQLL BZLF1 EBV PMID:34811538 tetramer-sort yes amplicon-seq effector memory T cells T1D T1D_5 chip0423_873654 PBMC +6907 CSVGAGGTNEKLFF TRBV29-1*01 TRBJ1-4*01 HLA-A*02:01 B2M MHCI GLCTLVAML BLMF1 EBV PMID:34811538 tetramer-sort yes amplicon-seq effector memory T cells T1D T1D_4 chip0423_476607 PBMC +6908 CASSDIREGQGEAFF TRBV10-2*01 TRBJ1-1*01 HLA-B*08:01 B2M MHCI QAKWRLQTL EBNA3A EBV PMID:34811538 tetramer-sort yes amplicon-seq effector memory T cells T1D T1D_6 chip0423_470851 PBMC +6909 CAVSQNNNARLMF TRAV8-1*01 TRAJ31*01 CASSDSEKGYTF TRBV3-1*01 TRBJ1-2*01 HLA-A*02:01 B2M MHCI LLSLFSLWL ZNT8 HomoSapiens PMID:34811538 tetramer-sort yes amplicon-seq Naive T cells T1D T1D_6 chip0423_850957 PBMC +6911 CAASETSYDKVIF TRAV13-1*01 TRAJ50*01 CATQGLGPEAFF TRBV25-1*01 TRBJ1-1*01 HLA-B*08:01 B2M MHCI RAKFKQLL BZLF1 EBV PMID:34811538 tetramer-sort yes amplicon-seq effector T cells T1D T1D_5 chip0423_536101 PBMC +6912 SIVREGGGAAGLTF TRAV26-1*01 TRAJ45*01 CASSLAVGEGPQHF TRBV7-9*01 TRBJ1-5*01 HLA-B*08:01 B2M MHCI RAKFKQLL BZLF1 EBV PMID:34811538 tetramer-sort yes amplicon-seq effector T cells T1D T1D_4 chip0423_503198 PBMC +6913 CSAGRDGTNEKLFF TRBV29-1*01 TRBJ1-4*01 HLA-A*02:01 B2M MHCI GLCTLVAML BLMF1 EBV PMID:34811538 tetramer-sort yes amplicon-seq effector memory T cells T1D T1D_6 chip0423_230570 PBMC +6914 CAAGETSYDKVIF TRAV13-1*01 TRAJ50*01 CASRLLGQPQHF TRBV28*01 TRBJ1-5*01 HLA-B*08:01 B2M MHCI RAKFKQLL BZLF1 EBV PMID:34811538 tetramer-sort yes amplicon-seq effector T cells T1D T1D_5 chip0423_861325 PBMC +6915 CASSSTGELFF TRBV13*01 TRBJ2-2*01 HLA-A*02:01 B2M MHCI MVWESGCTV PTPRN HomoSapiens PMID:34811538 tetramer-sort yes amplicon-seq Naive T cells T1D T1D_6 chip0423_733556 PBMC +6916 CAVNSGNTPLVF TRAV1-2*01 TRAJ29*01 CASSQVNNPGDGYTF TRBV14*01 TRBJ1-2*01 HLA-B*08:01 B2M MHCI QAKWRLQTL EBNA3A EBV PMID:34811538 tetramer-sort yes amplicon-seq effector memory T cells T1D T1D_4 chip0423_388190 PBMC +6917 CAVQATIc?tGGFATPF TRAV20*01 TRAJ9*01 CASSLELGLPYEQYF TRBV5-1*01 TRBJ2-7*01 HLA-B*08:01 B2M MHCI QAKWRLQTL EBNA3A EBV PMID:34811538 tetramer-sort yes amplicon-seq effector memory T cells T1D T1D_4 chip0423_225258 PBMC +6918 CVQALTNFGYDGFPF TRAV12-1*01 TRAJ48*01 CSARDLASSSGNTIYF TRBV20-1*01 TRBJ1-3*01 HLA-A*02:01 B2M MHCI LLAGIGTVPI PGT HomoSapiens PMID:34811538 tetramer-sort yes amplicon-seq Naive T cells T1D T1D_4 chip0423_91855 PBMC +6919 CAVNSGNTPLVF TRAV1-2*01 TRAJ29*01 CAGSQVNNPGDGYTF TRBV14*01 TRBJ1-2*01 HLA-B*08:01 B2M MHCI QAKWRLQTL EBNA3A EBV PMID:34811538 tetramer-sort yes amplicon-seq effector memory T cells T1D T1D_4 chip0423_34901 PBMC +6920 CIVREGGGADGLTF TRAV26-1*01 TRAJ45*01 CASSLAVGEGPQHF TRBV7-9*01 TRBJ1-5*01 HLA-B*08:01 B2M MHCI RAKFKQLL BZLF1 EBV PMID:34811538 tetramer-sort yes amplicon-seq effector memory T cells T1D T1D_4 chip0423_749369 PBMC +6921 CASQGGSQGNLIF TRAV20*01 TRAJ42*01 CASSLGGQTETQYF TRBV13*01 TRBJ2-5*01 HLA-A*02:01 B2M MHCI TLLANVTAV VP6 RotavirusA PMID:34811538 tetramer-sort yes amplicon-seq transitional T cells between effector and memory populations T1D T1D_6 chip0423_506763 PBMC +6923 CILPLEGGTSYGKLTF TRAV26-2*01 TRAJ52*01 CASSSGQAYEQYF TRBV7-8*01 TRBJ2-7*01 HLA-B*08:01 B2M MHCI FLRGRAYGL EBNA3A EBV PMID:34811538 tetramer-sort yes amplicon-seq effector memory T cells T1D T1D_4 chip0423_378169 PBMC +6924 CAAAETSYDKVIF TRAV13-1*01 TRAJ50*01 CASSQLGEAKEGTEAFF TRBV11-1*01 TRBJ1-1*01 HLA-B*08:01 B2M MHCI RAKFKQLL BZLF1 EBV PMID:34811538 tetramer-sort yes amplicon-seq effector memory T cells T1D T1D_5 chip0423_293997 PBMC +6925 CALCDRGSTLGRLYF TRAV19*01 TRAJ18*01 CASSLGREIGPIEQFF TRBV7-8*01 TRBJ2-1*01 HLA-B*08:01 B2M MHCI RAKFKQLL BZLF1 EBV PMID:34811538 tetramer-sort yes amplicon-seq effector memory T cells T1D T1D_5 chip0423_13211 PBMC +6926 CAGPSWTc?gGRRALTF TRAV25*01 TRAJ5*01 CASSPGPNTEAFF TRBV4-2*01 TRBJ1-1*01 HLA-B*08:01 B2M MHCI RAKFKQLL BZLF1 EBV PMID:34811538 tetramer-sort yes amplicon-seq effector memory T cells T1D T1D_4 chip0423_708381 PBMC +6927 CAATLYDKIIF TRAV29/DV5*01 TRAJ30*01 CSAGRDGTNEKLFF TRBV29-1*01 TRBJ1-4*01 HLA-A*02:01 B2M MHCI GLCTLVAML BLMF1 EBV PMID:34811538 tetramer-sort yes amplicon-seq effector memory T cells T1D T1D_6 chip0423_586889 PBMC +6928 CASSPPDRSDNSPLHF TRBV18*01 TRBJ1-6*01 HLA-B*08:01 B2M MHCI RAKFKQLL BZLF1 EBV PMID:34811538 tetramer-sort yes amplicon-seq effector T cells T1D T1D_5 chip0423_357139 PBMC +6929 CLVGDETGGYNKLVF TRAV4*01 TRAJ4*01 CASSNRADRNQPQHF TRBV13*01 TRBJ1-5*01 HLA-B*08:01 B2M MHCI QAKWRLQTL EBNA3A EBV PMID:34811538 tetramer-sort yes amplicon-seq Naive T cells T1D T1D_5 chip0423_792764 PBMC +6930 CAVRDTGGFKTIF TRAV3*01 TRAJ9*01 CASSPSSYNEQFF TRBV27*01 TRBJ2-1*01 HLA-A*02:01 B2M MHCI LLQEYNWEL GAD65 HomoSapiens PMID:34811538 tetramer-sort yes amplicon-seq Naive T cells T1D T1D_6 chip0423_13565 PBMC +6931 CAVGEDMRF TRAV12-2*01 TRAJ43*01 CASSSPDDPNTEAFL TRBV7-9*01 TRBJ1-1*01 HLA-A*02:01 B2M MHCI LLAGIGTVPI PGT HomoSapiens PMID:34811538 tetramer-sort yes amplicon-seq Naive T cells T1D T1D_6 chip0423_229018 PBMC +6932 CAAKGF TRAV13-1*01 TRAJ37*01,TRAJ34*01 CASSQVQVVDYGYTF TRBV4-1*01 TRBJ1-2*01 HLA-B*08:01 B2M MHCI ILKGKFQTA NP InfluenzaA PMID:34811538 tetramer-sort yes amplicon-seq Naive T cells T1D T1D_6 chip0423_725878 PBMC +6933 CAMRAIEGANNLFF TRAV14/DV4*01 TRAJ36*01 HLA-B*08:01 B2M MHCI RAKFKQLL BZLF1 EBV PMID:34811538 tetramer-sort yes amplicon-seq effector T cells T1D T1D_5 chip0423_646575 PBMC +6934 CAVSPGYSSASKIIF TRAV12-2*01 TRAJ3*01 CASSLVTGELFF TRBV5-4*01 TRBJ2-2*01 HLA-B*08:01 B2M MHCI MALWMRLL INS HomoSapiens PMID:34811538 tetramer-sort yes amplicon-seq Naive T cells T1D T1D_4 chip0423_357745 PBMC +6935 CAYGNQFYF TRAV16*01 TRAJ49*01 CASSPLGQRNTGELFF TRBV11-2*01 TRBJ2-2*01 HLA-B*08:01 B2M MHCI RAKFKQLL BZLF1 EBV PMID:34811538 tetramer-sort yes amplicon-seq effector memory T cells T1D T1D_4 chip0423_243220 PBMC +6936 CIVREGGGADGLTF TRAV26-1*01 TRAJ45*01 CASSLAVGEGPQHF TRBV7-9*01 TRBJ1-5*01 HLA-B*08:01 B2M MHCI RAKFKQLL BZLF1 EBV PMID:34811538 tetramer-sort yes amplicon-seq effector T cells T1D T1D_4 chip0423_27387 PBMC +6937 CSVSGDPSVDEQFF TRBV29-1*01 TRBJ2-1*01 HLA-A*02:01 B2M MHCI YVLDHLIVV BRLF1 EBV PMID:34811538 tetramer-sort yes amplicon-seq effector memory T cells T1D T1D_4 chip0423_565969 PBMC +6938 CAMRAIEGANNLFF TRAV14/DV4*01 TRAJ36*01 CASSLGSGGRGEQYF TRBV4-1*01 TRBJ2-7*01 HLA-B*08:01 B2M MHCI RAKFKQLL BZLF1 EBV PMID:34811538 tetramer-sort yes amplicon-seq effector memory T cells T1D T1D_5 chip0423_225254 PBMC +6939 CAVTSLYSGAGSYQLTF TRAV3*01 TRAJ28*01 CASSLTGPIPSTDTQYF TRBV27*01 TRBJ2-3*01 HLA-B*08:01 B2M MHCI QAKWRLQTL EBNA3A EBV PMID:34811538 tetramer-sort yes amplicon-seq effector memory T cells T1D T1D_4 chip0423_159618 PBMC +6940 CASSQLGGVYNEQFF TRBV7-9*01 TRBJ2-1*01 HLA-B*08:01 B2M MHCI RAKFKQLL BZLF1 EBV PMID:34811538 tetramer-sort yes amplicon-seq effector T cells T1D T1D_5 chip0423_244698 PBMC +6942 CASSALGQTHTEAFF TRAV36/DV7*01 TRAJ40*01 CASSALGQTHTEAFF TRBV7-9*01 TRBJ1-1*01 HLA-B*08:01 B2M MHCI RAKFKQLL BZLF1 EBV PMID:34811538 tetramer-sort yes amplicon-seq effector T cells T1D T1D_5 chip0423_394598 PBMC +6943 CAVSDGEGAQKLVF TRAV8-6*01 TRAJ54*01 CASSLTVLAGPNTEAFF TRBV7-3*01 TRBJ1-1*01 HLA-B*08:01 B2M MHCI RAKFKQLL BZLF1 EBV PMID:34811538 tetramer-sort yes amplicon-seq effector memory T cells T1D T1D_4 chip0423_315119 PBMC +6944 CAVRSLGGYALFFF TRAV12-2*01 TRAJ29*01 CASGPDISYSYEQYF TRBV12-5*01 TRBJ2-7*01 HLA-B*08:01 B2M MHCI RAKFKQLL BZLF1 EBV PMID:34811538 tetramer-sort yes amplicon-seq effector T cells T1D T1D_5 chip0423_256485 PBMC +6945 CILPLAGGPGYGKLTF TRAV26-2*01 TRAJ52*01 CASTLPGSSGQPQHF TRBV28*01 TRBJ1-5*01 HLA-B*08:01 B2M MHCI FLRGRAYGL EBNA3A EBV PMID:34811538 tetramer-sort yes amplicon-seq transitional T cells between effector and memory populations T1D T1D_6 chip0423_576397 PBMC +6947 CSAGRDGTNEKLFF TRBV29-1*01 TRBJ1-4*01 HLA-A*02:01 B2M MHCI GLCTLVAML BLMF1 EBV PMID:34811538 tetramer-sort yes amplicon-seq effector memory T cells T1D T1D_6 chip0423_646520 PBMC +6948 CAMRAIEGANNLFF TRAV14/DV4*01 TRAJ36*01 HLA-B*08:01 B2M MHCI RAKFKQLL BZLF1 EBV PMID:34811538 tetramer-sort yes amplicon-seq effector memory T cells T1D T1D_5 chip0423_347728 PBMC +6949 CAMSISNFGNEKLTF TRAV12-3*01 TRAJ48*01 CASRMDRAYEQYF TRBV6-1*01 TRBJ2-7*01 HLA-A*02:01 B2M MHCI LLAGIGTVPI PGT HomoSapiens PMID:34811538 tetramer-sort yes amplicon-seq Naive T cells T1D T1D_6 chip0423_177685 PBMC +6950 CASSLAGREGTQYF TRBV11-3*01 TRBJ2-3*01 HLA-B*08:01 B2M MHCI ELRSRYWAI NP InfluenzaA PMID:34811538 tetramer-sort yes amplicon-seq transitional T cells between effector and memory populations T1D T1D_6 chip0423_130464 PBMC +6951 CAMREGEGGGFKTIF TRAV14/DV4*01 TRAJ9*01 CATSEGHRYGYTF TRBV24-1*01 TRBJ1-2*01 HLA-B*08:01 B2M MHCI RAKFKQLL BZLF1 EBV PMID:34811538 tetramer-sort yes amplicon-seq effector memory T cells T1D T1D_5 chip0423_62736 PBMC +6952 CIVRTYTSGTYKYIF TRAV26-1*01 TRAJ40*01 CASSQDEIGLASDTQYF TRBV4-1*01 TRBJ2-3*01 HLA-A*02:01 B2M MHCI GILGFVFTL M1 InfluenzaA PMID:34811538 tetramer-sort yes amplicon-seq central memory T cells healthy healthy_3 chip0423_208289 PBMC +6953 CAMREDYGGSQGNLIF TRAV14/DV4*01 TRAJ42*01 CASSHQEGAIQPQHF TRBV4-1*01 TRBJ1-5*01 HLA-B*08:01 B2M MHCI RAKFKQLL BZLF1 EBV PMID:34811538 tetramer-sort yes amplicon-seq effector memory T cells T1D T1D_5 chip0423_796261 PBMC +6954 CVSSSSGTSWTF TRBV6-2*01,TRBV6-3*01 TRBJ1-2*01 HLA-B*08:01 B2M MHCI QAKWRLQTL EBNA3A EBV PMID:34811538 tetramer-sort yes amplicon-seq effector memory T cells T1D T1D_6 chip0423_360358 PBMC +6955 CAMTTYDYNFSF TRAV8-4*01 TRAJ20*01 HLA-A*02:01 B2M MHCI RLLYPDYQI ZNT8 HomoSapiens PMID:34811538 tetramer-sort yes amplicon-seq Naive T cells T1D T1D_6 chip0423_302375 PBMC +6956 CASSSLGGQDNSPLHF TRBV7-9*01 TRBJ1-6*01 HLA-B*08:01 B2M MHCI RAKFKQLL BZLF1 EBV PMID:34811538 tetramer-sort yes amplicon-seq effector memory T cells T1D T1D_5 chip0423_245434 PBMC +6957 CALSEGG*??cFGNEKLTF TRAV16*01 TRAJ48*01 HLA-A*02:01 B2M MHCI CLGGLLTMV LMP2A EBV PMID:34811538 tetramer-sort yes amplicon-seq effector memory T cells T1D T1D_4 chip0423_221172 PBMC +6958 CAVNSGNTPLVF TRAV1-2*01 TRAJ29*01 CASSQVNNPGDGYTF TRBV14*01 TRBJ1-2*01 HLA-B*08:01 B2M MHCI QAKWRLQTL EBNA3A EBV PMID:34811538 tetramer-sort yes amplicon-seq effector T cells T1D T1D_4 chip0423_148122 PBMC +6959 CAVRDTTWAAKIIF TRAV3*01 TRAJ30*01 CASSLGGGEGASEQFF TRBV7-6*01 TRBJ2-1*01 HLA-B*08:01 B2M MHCI FLRGRAYGL EBNA3A EBV PMID:34811538 tetramer-sort yes amplicon-seq effector memory T cells T1D T1D_4 chip0423_455240 PBMC +6960 CASSLAVGEGPQHF TRBV7-9*01 TRBJ1-5*01 HLA-B*08:01 B2M MHCI RAKFKQLL BZLF1 EBV PMID:34811538 tetramer-sort yes amplicon-seq effector memory T cells T1D T1D_4 chip0423_685269 PBMC +6961 CAETDGPNFVF TRAV5*01 TRAJ26*01 CASSYGVGYGYTF TRBV7-2*01 TRBJ1-2*01 HLA-B*08:01 B2M MHCI RAKFKQLL BZLF1 EBV PMID:34811538 tetramer-sort yes amplicon-seq effector T cells T1D T1D_6 chip0423_769141 PBMC +6962 CAARNLRca??ccNAGQSTF TRAV23/DV6*01 TRAJ27*01 CASSSDGMNTEAFF TRBV10-2*01 TRBJ1-1*01 HLA-A*02:01 B2M MHCI CLGGLLTMV LMP2A EBV PMID:34811538 tetramer-sort yes amplicon-seq central memory T cells healthy healthy_4 chip0423_596837 PBMC +6963 CASSTPGTSNYNEQFF TRBV7-2*01 TRBJ2-1*01 HLA-A*02:01 B2M MHCI CLGGLLTMV LMP2A EBV PMID:34811538 tetramer-sort yes amplicon-seq Naive T cells T1D T1D_4 chip0423_242238 PBMC +6964 CAASETSYDKVIF TRAV13-1*01 TRAJ50*01 CASIPKQENTIYF TRBV12-3*01,TRBV12-4*01 TRBJ1-3*01 HLA-B*08:01 B2M MHCI RAKFKQLL BZLF1 EBV PMID:34811538 tetramer-sort yes amplicon-seq effector memory T cells T1D T1D_5 chip0423_38888 PBMC +6965 CAVRDAPWAGRIVF TRAV3*01 TRAJ30*01 CASSLGGGEGASEQFF TRBV7-6*01 TRBJ2-1*01 HLA-B*08:01 B2M MHCI FLRGRAYGL EBNA3A EBV PMID:34811538 tetramer-sort yes amplicon-seq effector memory T cells T1D T1D_4 chip0423_500472 PBMC +6966 CASSLHPW??gAAYNEQVF TRBV4-3*01 TRBJ2-1*01 HLA-B*08:01 B2M MHCI FLRGRAYGL EBNA3A EBV PMID:34811538 tetramer-sort yes amplicon-seq effector memory T cells T1D T1D_6 chip0423_729534 PBMC +6967 CAVSDGGFKTIF TRAV12-2*01 TRAJ9*01 HLA-A*02:01 B2M MHCI ALAGIGILTV MART1 HomoSapiens PMID:34811538 tetramer-sort yes amplicon-seq Naive T cells T1D T1D_6 chip0423_351677 PBMC +6968 CAAAETSYDKVIF TRAV13-1*01 TRAJ50*01 CASQLAGGTGELFF TRBV24-1*01 TRBJ2-2*01 HLA-B*08:01 B2M MHCI RAKFKQLL BZLF1 EBV PMID:34811538 tetramer-sort yes amplicon-seq effector memory T cells T1D T1D_5 chip0423_448671 PBMC +6969 RLLSDL??tGYALYF TRAV26-2*01 TRAJ41*01 CASSQLGEAKEGTEAFF TRBV11-1*01 TRBJ1-1*01 HLA-B*08:01 B2M MHCI RAKFKQLL BZLF1 EBV PMID:34811538 tetramer-sort yes amplicon-seq effector memory T cells T1D T1D_5 chip0423_447691 PBMC +6970 CAPFNFNKFYF TRAV13-1*01 TRAJ21*01 CASSLRGGQETQYF TRBV7-3*01 TRBJ2-5*01 HLA-B*08:01 B2M MHCI RAKFKQLL BZLF1 EBV PMID:34811538 tetramer-sort yes amplicon-seq effector memory T cells T1D T1D_4 chip0423_140470 PBMC +6971 CAASETSYDKVIF TRAV13-1*01 TRAJ50*01 CASSSTGGGDQPQHF TRBV7-9*01 TRBJ1-5*01 HLA-B*08:01 B2M MHCI RAKFKQLL BZLF1 EBV PMID:34811538 tetramer-sort yes amplicon-seq effector memory T cells T1D T1D_4 chip0423_8831 PBMC +6972 CILPLAGGTSYGKLTF TRAV26-2*01 TRAJ52*01 CASSLGQAYEQYF TRBV7-8*01 TRBJ2-7*01 HLA-B*08:01 B2M MHCI FLRGRAYGL EBNA3A EBV PMID:34811538 tetramer-sort yes amplicon-seq effector memory T cells T1D T1D_6 chip0423_460588 PBMC +6974 CASTLQGGSEKLVF TRAV38-1*01 TRAJ57*01 CASSQRDPAELFF TRBV3-1*01 TRBJ2-2*01 HLA-B*08:01 B2M MHCI YAYAKWKL ZNT8 HomoSapiens PMID:34811538 tetramer-sort yes amplicon-seq Naive T cells T1D T1D_5 chip0423_581289 PBMC +6975 CASSLAVGEGPQHF TRBV7-9*01 TRBJ1-5*01 HLA-B*08:01 B2M MHCI RAKFKQLL BZLF1 EBV PMID:34811538 tetramer-sort yes amplicon-seq effector memory T cells T1D T1D_4 chip0423_475967 PBMC +6976 CALPRGat?AGSLLSF TRAV16*01 TRAJ39*01 CSVKDRAGNTEAFF TRBV29-1*01 TRBJ1-1*01 HLA-B*08:01 B2M MHCI LNHLKATPI IAPP HomoSapiens PMID:34811538 tetramer-sort yes amplicon-seq Naive T cells T1D T1D_4 chip0423_834086 PBMC +6977 CASSSLSGGAGNEQFF TRBV7-9*01 TRBJ2-1*01 HLA-B*08:01 B2M MHCI RAKFKQLL BZLF1 EBV PMID:34811538 tetramer-sort yes amplicon-seq effector memory T cells T1D T1D_5 chip0423_188773 PBMC +6978 CAVDNQGGKLIF TRAV12-2*01 TRAJ23*01 CASSYSGGYEQYF TRBV6-5*01 TRBJ2-7*01 HLA-A*02:01 B2M MHCI ALAGIGILTV MART1 HomoSapiens PMID:34811538 tetramer-sort yes amplicon-seq Naive T cells T1D T1D_6 chip0423_863252 PBMC +6979 CAATETSYDKVIF TRAV13-1*01 TRAJ50*01 CASSPLGSNEKLFF TRBV7-9*01 TRBJ1-4*01 HLA-B*08:01 B2M MHCI RAKFKQLL BZLF1 EBV PMID:34811538 tetramer-sort yes amplicon-seq effector memory T cells T1D T1D_5 chip0423_841792 PBMC +6980 CIVREGGGADGLPF TRAV26-1*01 TRAJ45*01 CASSLAVGEGPQHF TRBV7-9*01 TRBJ1-5*01 HLA-B*08:01 B2M MHCI RAKFKQLL BZLF1 EBV PMID:34811538 tetramer-sort yes amplicon-seq effector memory T cells T1D T1D_4 chip0423_505903 PBMC +6981 CAASIKGFGNVLNCGSGTQV TRAV13-1*01 TRAJ41*01 CASSGRVEEYGGELFF TRBV27*01 TRBJ2-2*01 HLA-A*01:01 B2M MHCI HSNLNDATY NP InfluenzaA PMID:34811538 tetramer-sort yes amplicon-seq effector T cells T1D T1D_5 chip0423_389220 PBMC +6982 CILPLAGGTSYGKLTF TRAV26-2*01 TRAJ52*01 CASSLGQAYEQYF TRBV7-8*01 TRBJ2-7*01 HLA-B*08:01 B2M MHCI FLRGRAYGL EBNA3A EBV PMID:34811538 tetramer-sort yes amplicon-seq effector memory T cells T1D T1D_6 chip0423_610825 PBMC +6983 CAASDSSGGGADGLTF TRAV29/DV5*01 TRAJ45*01 CASSSSGANVLTF TRBV5-6*01 TRBJ2-6*01 HLA-A*01:01 B2M MHCI ALASCMGLIY M1 InfluenzaA PMID:34811538 tetramer-sort yes amplicon-seq central memory T cells healthy healthy_3 chip0423_342092 PBMC +6984 CAVGASNTNAGKSTF TRAV21*01 TRAJ27*01 CASSEAPTGSDYGYTF TRBV6-1*01 TRBJ1-2*01 HLA-A*01:01 B2M MHCI LTSLTILQLY G6PC2 HomoSapiens PMID:34811538 tetramer-sort yes amplicon-seq Naive T cells T1D T1D_5 chip0423_164518 PBMC +6985 CAVNGAGGYNKLFF TRAV12-2*01 TRAJ4*01 CASSYGNEQYF TRBV6-2*01,TRBV6-3*01 TRBJ2-7*01 HLA-A*02:01 B2M MHCI NLFLFLFAV IGRP HomoSapiens PMID:34811538 tetramer-sort yes amplicon-seq transitional T cells between effector and memory populations T1D T1D_4 chip0423_148335 PBMC +6986 CAENIAIY??tTRYNKLII TRAV13-2*01 TRAJ4*01 HLA-B*08:01 B2M MHCI RAKFKQLL BZLF1 EBV PMID:34811538 tetramer-sort yes amplicon-seq effector memory T cells T1D T1D_5 chip0423_708712 PBMC +6987 CALRECLPg?aRGAAGLTV TRAV16*01 TRAJ45*01 CSATNQYDGPDTEAFF TRBV20-1*01 TRBJ1-1*01 HLA-B*08:01 B2M MHCI RAKFKQLL BZLF1 EBV PMID:34811538 tetramer-sort yes amplicon-seq transitional T cells between effector and memory populations T1D T1D_4 chip0423_33389 PBMC +6988 CASSLGQAYDPYF TRBV7-8*01 TRBJ2-7*01 HLA-B*08:01 B2M MHCI FLRGRAYGL EBNA3A EBV PMID:34811538 tetramer-sort yes amplicon-seq effector memory T cells T1D T1D_6 chip0423_790484 PBMC +6989 CASSPGGARGGLYC TRBV5-6*01 TRBJ2-7*01 HLA-A*02:01 B2M MHCI YLLEMLWRL LMP1 EBV PMID:34811538 tetramer-sort yes amplicon-seq effector memory T cells T1D T1D_4 chip0423_765631 PBMC +6990 CASSQVNNPGDGYTF TRBV14*01 TRBJ1-2*01 HLA-B*08:01 B2M MHCI QAKWRLQTL EBNA3A EBV PMID:34811538 tetramer-sort yes amplicon-seq effector memory T cells T1D T1D_4 chip0423_861209 PBMC +6991 CAVSDGEGAPQLVF TRAV8-6*01 TRAJ54*01 HLA-B*08:01 B2M MHCI RAKFKQLL BZLF1 EBV PMID:34811538 tetramer-sort yes amplicon-seq effector memory T cells T1D T1D_4 chip0423_553263 PBMC +6992 CAVGDRAGAQELVF TRAV8-6*01 TRAJ54*01 HLA-B*08:01 B2M MHCI RAKFKQLL BZLF1 EBV PMID:34811538 tetramer-sort yes amplicon-seq effector memory T cells T1D T1D_4 chip0423_377483 PBMC +6993 CSAGRDGTNEKLFF TRBV29-1*01 TRBJ1-4*01 HLA-A*02:01 B2M MHCI GLCTLVAML BLMF1 EBV PMID:34811538 tetramer-sort yes amplicon-seq effector memory T cells T1D T1D_6 chip0423_462470 PBMC +6994 CAMREGESSASKIIF TRAV14/DV4*01 TRAJ3*01 CSVGQAYGYTF TRBV29-1*01 TRBJ1-2*01 HLA-B*08:01 B2M MHCI RAKFKQLL BZLF1 EBV PMID:34811538 tetramer-sort yes amplicon-seq effector T cells T1D T1D_5 chip0423_33640 PBMC +6995 CASSLAGTSYGYTF TRBV7-2*01 TRBJ1-2*01 HLA-A*02:01 B2M MHCI ALAGIGILTV MART1 HomoSapiens PMID:34811538 tetramer-sort yes amplicon-seq Naive T cells T1D T1D_6 chip0423_642513 PBMC +6996 CAFDSNYQLIW TRAV38-1*01 TRAJ33*01 CASSLTPSAYEQYF TRBV27*01 TRBJ2-7*01 HLA-A*02:01 B2M MHCI RGPGRAFVTI GP160 HIV-1 PMID:34811538 tetramer-sort yes amplicon-seq Naive T cells T1D T1D_6 chip0423_56489 PBMC +6997 CASSQVNNPGDGYTF TRBV14*01 TRBJ1-2*01 HLA-B*08:01 B2M MHCI QAKWRLQTL EBNA3A EBV PMID:34811538 tetramer-sort yes amplicon-seq effector memory T cells T1D T1D_4 chip0423_655481 PBMC +6998 CAMREVSGRRALTF TRAV14/DV4*01 TRAJ5*01 CASSFNSLQEIAYEQYF TRBV7-3*01 TRBJ2-7*01 HLA-B*08:01 B2M MHCI RAKFKQLL BZLF1 EBV PMID:34811538 tetramer-sort yes amplicon-seq effector memory T cells T1D T1D_5 chip0423_868868 PBMC +6999 CASSYGGDTEAFF TRBV9*01 TRBJ1-1*01 HLA-A*02:01 B2M MHCI ALGIGILTV MART1 HomoSapiens PMID:34811538 tetramer-sort yes amplicon-seq Naive T cells T1D T1D_6 chip0423_105405 PBMC +7000 CASSLAVGEGPQHF TRBV7-9*01 TRBJ1-5*01 HLA-B*08:01 B2M MHCI RAKFKQLL BZLF1 EBV PMID:34811538 tetramer-sort yes amplicon-seq effector T cells T1D T1D_4 chip0423_36144 PBMC +7001 CAISLSNFGNEKLTF TRAV12-3*01 TRAJ48*01 RASSHADGQLDDEQFF TRBV19*01 TRBJ2-1*01 HLA-A*02:01 B2M MHCI LLAGIGTVPI PGT HomoSapiens PMID:34811538 tetramer-sort yes amplicon-seq Naive T cells T1D T1D_4 chip0423_406828 PBMC +7002 CAMREGEGGGFKTIF TRAV14/DV4*01 TRAJ9*01 CASSSGLAGGSHTGELFF TRBV11-1*01 TRBJ2-2*01 HLA-B*08:01 B2M MHCI RAKFKQLL BZLF1 EBV PMID:34811538 tetramer-sort yes amplicon-seq effector T cells T1D T1D_5 chip0423_228187 PBMC +7003 CASQLAGGTGELFF TRBV24-1*01 TRBJ2-2*01 HLA-B*08:01 B2M MHCI RAKFKQLL BZLF1 EBV PMID:34811538 tetramer-sort yes amplicon-seq effector memory T cells T1D T1D_5 chip0423_733100 PBMC +7004 CAMSAGF TRAV12-3*01 TRAJ11*01 HLA-A*02:01 B2M MHCI LLAGIGTVPI PGT HomoSapiens PMID:34811538 tetramer-sort yes amplicon-seq Naive T cells T1D T1D_4 chip0423_727185 PBMC +7005 CAVNVPPITTSGTYKYIF TRAV39*01 TRAJ40*01 CASGLFYSNQPQHF TRBV5-6*01 TRBJ1-5*01 HLA-B*08:01 B2M MHCI SRKHKWKL GAD2 HomoSapiens PMID:34811538 tetramer-sort yes amplicon-seq Naive T cells T1D T1D_4 chip0423_719233 PBMC +7006 CAASETSYDKVIF TRAV13-1*01 TRAJ50*01 CASSLVDRPYEQYF TRBV7-9*01 TRBJ2-7*01 HLA-B*08:01 B2M MHCI RAKFKQLL BZLF1 EBV PMID:34811538 tetramer-sort yes amplicon-seq effector memory T cells T1D T1D_5 chip0423_278686 PBMC +7007 CASSMVVDYGYTF TRBV19*01 TRBJ1-2*01 HLA-A*02:01 B2M MHCI AAGIGILTV MART1 HomoSapiens PMID:34811538 tetramer-sort yes amplicon-seq Naive T cells T1D T1D_6 chip0423_703329 PBMC +7008 CASSTSRGSGNHHIF TRBV4-1*01 TRBJ1-3*01 HLA-B*08:01 B2M MHCI RAKFKQLL BZLF1 EBV PMID:34811538 tetramer-sort yes amplicon-seq effector memory T cells T1D T1D_4 chip0423_308269 PBMC +7009 CAAAETSYDKVIF TRAV13-1*01 TRAJ50*01 CASQLAGGTGELFF TRBV24-1*01 TRBJ2-2*01 HLA-B*08:01 B2M MHCI RAKFKQLL BZLF1 EBV PMID:34811538 tetramer-sort yes amplicon-seq transitional T cells between effector and memory populations T1D T1D_5 chip0423_288346 PBMC +7010 CALVNYGGSQGNLIF TRAV19*01 TRAJ42*01 CASSLGNTEAFS TRBV7-6*01 TRBJ1-1*01 HLA-A*01:01 B2M MHCI STNVGSNTY IAPP HomoSapiens PMID:34811538 tetramer-sort yes amplicon-seq Naive T cells T1D T1D_4 chip0423_755651 PBMC +7011 CAISDVTPELNEQFF TRBV10-3*01 TRBJ2-1*01 HLA-B*08:01 B2M MHCI RAKFKQLL BZLF1 EBV PMID:34811538 tetramer-sort yes amplicon-seq effector memory T cells T1D T1D_5 chip0423_338896 PBMC +7012 CAARETSYDKVIF TRAV13-1*01 TRAJ50*01 CACRRVGQGVGETQYF TRBV7-9*01 TRBJ2-5*01 HLA-B*08:01 B2M MHCI RAKFKQLL BZLF1 EBV PMID:34811538 tetramer-sort yes amplicon-seq transitional T cells between effector and memory populations T1D T1D_5 chip0423_448346 PBMC +7013 CAASKIEga?GGAAGLTF TRAV23/DV6*01 TRAJ45*01 CASSLGQAYEQYF TRBV7-8*01 TRBJ2-7*01 HLA-B*08:01 B2M MHCI FLRGRAYGL EBNA3A EBV PMID:34811538 tetramer-sort yes amplicon-seq effector T cells T1D T1D_6 chip0423_322219 PBMC +7014 CAMSEGPPSYATVLF TRAV12-3*01 TRAJ50*01 CASSLKSSTDTQYF TRBV7-3*01 TRBJ2-3*01 HLA-B*08:01 B2M MHCI RAKFKQLL BZLF1 EBV PMID:34811538 tetramer-sort yes amplicon-seq effector memory T cells T1D T1D_5 chip0423_787015 PBMC +7016 CIVREGGGADGLTF TRAV26-1*01 TRAJ45*01 CASSLAVGEGPQHF TRBV7-9*01 TRBJ1-5*01 HLA-B*08:01 B2M MHCI RAKFKQLL BZLF1 EBV PMID:34811538 tetramer-sort yes amplicon-seq effector memory T cells T1D T1D_4 chip0423_292911 PBMC +7017 CASTGGNGEAFF TRAV14/DV4*01 TRAJ40*01 CASTGGNGEAFF TRBV2*01 TRBJ1-1*01 HLA-A*02:01 B2M MHCI LLAGIGTVPI PGT HomoSapiens PMID:34811538 tetramer-sort yes amplicon-seq Naive T cells T1D T1D_4 chip0423_543611 PBMC +7018 CAFTISNFGNEKLTF TRAV12-3*01 TRAJ48*01 CAISEEAGGSSNQPQHF TRBV10-3*01 TRBJ1-5*01 HLA-A*02:01 B2M MHCI LLAGIGTVPI PGT HomoSapiens PMID:34811538 tetramer-sort yes amplicon-seq Naive T cells healthy healthy_3 chip0423_737228 PBMC +7019 CAAS*PSSD*VIF TRAV13-1*01 TRAJ50*01 CASSPLGTDYNEQFF TRBV7-9*01 TRBJ2-1*01 HLA-B*08:01 B2M MHCI RAKFKQLL BZLF1 EBV PMID:34811538 tetramer-sort yes amplicon-seq effector memory T cells T1D T1D_5 chip0423_610896 PBMC +7020 CILPLAGGTSYGKLTF TRAV26-2*01 TRAJ52*01 CASSLGQAYEQYF TRBV7-8*01 TRBJ2-7*01 HLA-B*08:01 B2M MHCI FLRGRAYGL EBNA3A EBV PMID:34811538 tetramer-sort yes amplicon-seq transitional T cells between effector and memory populations T1D T1D_6 chip0423_236142 PBMC +7021 CAVCDSRWVVKIFF TRAV3*01 TRAJ30*01 CASSLGGGEGASEQFF TRBV7-6*01 TRBJ2-1*01 HLA-B*08:01 B2M MHCI FLRGRAYGL EBNA3A EBV PMID:34811538 tetramer-sort yes amplicon-seq effector memory T cells T1D T1D_4 chip0423_653090 PBMC +7022 CASSQVNNPGDGYTF TRBV14*01 TRBJ1-2*01 HLA-B*08:01 B2M MHCI QAKWRLQTL EBNA3A EBV PMID:34811538 tetramer-sort yes amplicon-seq effector memory T cells T1D T1D_4 chip0423_339126 PBMC +7023 CIVREEGGADGLPF TRAV26-1*01 TRAJ45*01 CASSLAVGEGPQHS TRBV7-9*01 TRBJ1-5*01 HLA-B*08:01 B2M MHCI RAKFKQLL BZLF1 EBV PMID:34811538 tetramer-sort yes amplicon-seq effector T cells T1D T1D_4 chip0423_704499 PBMC +7024 CAMRAIEGANNLFF TRAV14/DV4*01 TRAJ36*01 HLA-B*08:01 B2M MHCI RAKFKQLL BZLF1 EBV PMID:34811538 tetramer-sort yes amplicon-seq effector T cells T1D T1D_5 chip0423_117752 PBMC +7025 CATADRGSTLGRLYF TRAV17*01 TRAJ18*01 CASSEWGYGSSYEQYF TRBV2*01 TRBJ2-7*01 HLA-A*01:01 B2M MHCI VTDAAHLLI ZNT8 HomoSapiens PMID:34811538 tetramer-sort yes amplicon-seq Naive T cells T1D T1D_5 chip0423_501731 PBMC +7026 CTSSSGTGSYEQYF TRBV5-1*01 TRBJ2-7*01 HLA-A*02:01 B2M MHCI CLGGLLTMV LMP2A EBV PMID:34811538 tetramer-sort yes amplicon-seq Naive T cells T1D T1D_6 chip0423_166560 PBMC +7027 CALSSYSGGYQKVTF TRAV19*01 TRAJ13*01 HLA-A*01:01 B2M MHCI CTELKLSDY NP InfluenzaA PMID:34811538 tetramer-sort yes amplicon-seq effector T cells healthy healthy_3 chip0423_634642 PBMC +7028 CAVRDDMRF TRAV12-2*01 TRAJ43*01 HLA-A*02:01 B2M MHCI LLAGIGTVPI PGT HomoSapiens PMID:34811538 tetramer-sort yes amplicon-seq Naive T cells T1D T1D_4 chip0423_394793 PBMC +7029 CAMSFSGGYNKLIF TRAV14/DV4*01 TRAJ4*01 CSARDRGAENTGELFF TRBV20-1*01 TRBJ2-2*01 HLA-B*08:01 B2M MHCI RAKFKQLL BZLF1 EBV PMID:34811538 tetramer-sort yes amplicon-seq central memory T cells T1D T1D_4 chip0423_582211 PBMC +7030 CAATETSYDKVIF TRAV13-1*01 TRAJ50*01 CASSPPGRNEKLFF TRBV12-3*01,TRBV12-4*01 TRBJ1-4*01 HLA-B*08:01 B2M MHCI RAKFKQLL BZLF1 EBV PMID:34811538 tetramer-sort yes amplicon-seq effector T cells T1D T1D_5 chip0423_518265 PBMC +7031 CAAAETSYDKVIF TRAV13-1*01 TRAJ50*01 CASQLAGGTGELFF TRBV24-1*01 TRBJ2-2*01 HLA-B*08:01 B2M MHCI RAKFKQLL BZLF1 EBV PMID:34811538 tetramer-sort yes amplicon-seq effector memory T cells T1D T1D_5 chip0423_564095 PBMC +7032 CASSSGQAYEQYF TRBV7-8*01 TRBJ2-7*01 HLA-B*08:01 B2M MHCI FLRGRAYGL EBNA3A EBV PMID:34811538 tetramer-sort yes amplicon-seq effector memory T cells healthy healthy_4 chip0423_237704 PBMC +7033 CASSLAVGEGPQHF TRBV7-9*01 TRBJ1-5*01 HLA-B*08:01 B2M MHCI RAKFKQLL BZLF1 EBV PMID:34811538 tetramer-sort yes amplicon-seq effector memory T cells T1D T1D_4 chip0423_42896 PBMC +7034 CASSLLGRSNTEAFF TRBV7-9*01 TRBJ1-1*01 HLA-B*08:01 B2M MHCI RAKFKQLL BZLF1 EBV PMID:34811538 tetramer-sort yes amplicon-seq effector T cells T1D T1D_5 chip0423_871280 PBMC +7035 CASSLTVLAGPNTEAFF TRBV7-3*01 TRBJ1-1*01 HLA-B*08:01 B2M MHCI RAKFKQLL BZLF1 EBV PMID:34811538 tetramer-sort yes amplicon-seq effector memory T cells T1D T1D_4 chip0423_412945 PBMC +7036 CATDATNNAGNMLTF TRAV17*01 TRAJ39*01 CASSLATYQETQYF TRBV7-2*01 TRBJ2-5*01 HLA-A*02:01 B2M MHCI VAANIVLTV ZNT8 HomoSapiens PMID:34811538 tetramer-sort yes amplicon-seq Naive T cells T1D T1D_4 chip0423_687517 PBMC +7037 CAVPGGSQGNLIF TRAV8-3*01 TRAJ42*01 CASSYSSTGEYF TRBV6-2*01,TRBV6-3*01 TRBJ2-7*01 HLA-A*02:01 B2M MHCI YLLEMLWRL LMP1 EBV PMID:34811538 tetramer-sort yes amplicon-seq central memory T cells T1D T1D_4 chip0423_417385 PBMC +7038 CALVNYGGSQGNLIF TRAV19*01 TRAJ42*01 CAVWRDGAYEQYF TRBV28*01 TRBJ2-7*01 HLA-A*02:01 B2M MHCI YLLEMLWRL LMP1 EBV PMID:34811538 tetramer-sort yes amplicon-seq central memory T cells T1D T1D_4 chip0423_131601 PBMC +7039 CAMSKSNFGNEKLTF TRAV12-3*01 TRAJ48*01 CASSRPNYGYTF TRBV11-1*01 TRBJ1-2*01 HLA-A*02:01 B2M MHCI LLAGIGTVPI PGT HomoSapiens PMID:34811538 tetramer-sort yes amplicon-seq Naive T cells T1D T1D_6 chip0423_434092 PBMC +7040 CAADQAGTALTF TRAV17*01 TRAJ15*01 CASSQGETPEAFF TRBV3-1*01 TRBJ1-1*01 HLA-B*08:01 B2M MHCI HARIKLKV PTPRN HomoSapiens PMID:34811538 tetramer-sort yes amplicon-seq Naive T cells T1D T1D_4 chip0423_277786 PBMC +7041 CAYGQNFVF TRAV8-3*01 TRAJ26*01 CASSADSDYGYTF TRBV9*01 TRBJ1-2*01 HLA-A*02:01 B2M MHCI YLLEMLWRL LMP1 EBV PMID:34811538 tetramer-sort yes amplicon-seq central memory T cells T1D T1D_4 chip0423_153860 PBMC +7042 CILPLAGGTSYGKLTF TRAV26-2*01 TRAJ52*01 CASRLGRAYEQYF TRBV7-8*01 TRBJ2-7*01 HLA-A*02:01 B2M MHCI CLGGLLTMV LMP2A EBV PMID:34811538 tetramer-sort yes amplicon-seq effector memory T cells T1D T1D_4 chip0423_124103 PBMC +7043 CAGSYGGSQGNLIF TRAV25*01 TRAJ42*01 CASSIRSTGELSF TRBV19*01 TRBJ2-2*01 HLA-A*02:01 B2M MHCI GILGFVFTL M1 InfluenzaA PMID:34811538 tetramer-sort yes amplicon-seq effector T cells T1D T1D_6 chip0423_872017 PBMC +7044 CAYGQNFVF TRAV8-3*01 TRAJ26*01 CASSADSDYGYTF TRBV9*01 TRBJ1-2*01 HLA-A*02:01 B2M MHCI YLLEMLWRL LMP1 EBV PMID:34811538 tetramer-sort yes amplicon-seq effector memory T cells T1D T1D_4 chip0423_695763 PBMC +7045 CAAAETSYDKVIF TRAV13-1*01 TRAJ50*01 CASQLAGGTGELFF TRBV24-1*01 TRBJ2-2*01 HLA-B*08:01 B2M MHCI RAKFKQLL BZLF1 EBV PMID:34811538 tetramer-sort yes amplicon-seq effector memory T cells T1D T1D_5 chip0423_648161 PBMC +7046 CASQLAGGTGELFF TRBV24-1*01 TRBJ2-2*01 HLA-B*08:01 B2M MHCI RAKFKQLL BZLF1 EBV PMID:34811538 tetramer-sort yes amplicon-seq effector T cells T1D T1D_5 chip0423_457910 PBMC +7047 CAPLHPPGAQKLVF TRAV17*01 TRAJ54*01 HLA-A*02:01 B2M MHCI ALGIGILTV MART1 HomoSapiens PMID:34811538 tetramer-sort yes amplicon-seq Naive T cells T1D T1D_4 chip0423_782802 PBMC +7048 CAVREYGNKLVF TRAV1-2*01 TRAJ47*01 HLA-B*08:01 B2M MHCI ELRSRYWAI NP InfluenzaA PMID:34811538 tetramer-sort yes amplicon-seq effector T cells T1D T1D_6 chip0423_359342 PBMC +7049 CAVRIGNQFYF TRAV12-2*01 TRAJ49*01 CASGGGIGNTEAFF TRBV28*01 TRBJ1-1*01 HLA-B*08:01 B2M MHCI SPMRSVLL PTPRN HomoSapiens PMID:34811538 tetramer-sort yes amplicon-seq Naive T cells T1D T1D_6 chip0423_226500 PBMC +7050 CILPLAGGTSYGKLTF TRAV26-2*01 TRAJ52*01 CASSLGQAYEQYF TRBV7-8*01 TRBJ2-7*01 HLA-B*08:01 B2M MHCI FLRGRAYGL EBNA3A EBV PMID:34811538 tetramer-sort yes amplicon-seq effector memory T cells T1D T1D_6 chip0423_175774 PBMC +7051 CAMLLSNFGNEKLTF TRAV12-3*01 TRAJ48*01 CAISELTGGVNYGYTF TRBV10-3*01 TRBJ1-2*01 HLA-A*02:01 B2M MHCI LLAGIGTVPI PGT HomoSapiens PMID:34811538 tetramer-sort yes amplicon-seq Naive T cells T1D T1D_4 chip0423_49045 PBMC +7052 CASSPPDGGVYEQYF TRBV9*01 TRBJ2-7*01 HLA-A*02:01 B2M MHCI LVGPTPVNI POL HIV-1 PMID:34811538 tetramer-sort yes amplicon-seq Naive T cells T1D T1D_6 chip0423_832188 PBMC +7053 CAATETSYDKVIF TRAV13-1*01 TRAJ50*01 CASSLLGQKSGNTIYF TRBV7-9*01 TRBJ1-3*01 HLA-B*08:01 B2M MHCI RAKFKQLL BZLF1 EBV PMID:34811538 tetramer-sort yes amplicon-seq effector memory T cells T1D T1D_5 chip0423_238094 PBMC +7054 CIVREGGGADGLTF TRAV26-1*01 TRAJ45*01 CASSLAVGEGPQHF TRBV7-9*01 TRBJ1-5*01 HLA-B*08:01 B2M MHCI RAKFKQLL BZLF1 EBV PMID:34811538 tetramer-sort yes amplicon-seq effector T cells T1D T1D_4 chip0423_514403 PBMC +7055 CAVRPSIa?tAGNMLTF TRAV3*01 TRAJ39*01 CSVGTGGTNEKLFF TRBV29-1*01 TRBJ1-4*01 HLA-A*02:01 B2M MHCI GLCTLVAML BLMF1 EBV PMID:34811538 tetramer-sort yes amplicon-seq effector memory T cells T1D T1D_6 chip0423_80813 PBMC +7056 CAVRPISGGSYIPTF TRAV3*01 TRAJ6*01 HLA-A*02:01 B2M MHCI YVLDHLIVV BRLF1 EBV PMID:34811538 tetramer-sort yes amplicon-seq Naive T cells T1D T1D_4 chip0423_446157 PBMC +7057 CILPLAGGPRYGKLTF TRAV26-2*01 TRAJ52*01 CASSLGQAYEQYF TRBV7-8*01 TRBJ2-7*01 HLA-B*08:01 B2M MHCI FLRGRAYGL EBNA3A EBV PMID:34811538 tetramer-sort yes amplicon-seq effector memory T cells T1D T1D_6 chip0423_386730 PBMC +7059 CASGPDISYSYEQYF TRBV12-5*01 TRBJ2-7*01 HLA-B*08:01 B2M MHCI RAKFKQLL BZLF1 EBV PMID:34811538 tetramer-sort yes amplicon-seq effector memory T cells T1D T1D_5 chip0423_419997 PBMC +7060 CAAAETSYDKVIF TRAV13-1*01 TRAJ50*01 HLA-B*08:01 B2M MHCI RAKFKQLL BZLF1 EBV PMID:34811538 tetramer-sort yes amplicon-seq effector T cells T1D T1D_5 chip0423_212710 PBMC +7062 CASSLAVGEGPQHF TRBV7-9*01 TRBJ1-5*01 HLA-B*08:01 B2M MHCI RAKFKQLL BZLF1 EBV PMID:34811538 tetramer-sort yes amplicon-seq effector memory T cells T1D T1D_4 chip0423_883205 PBMC +7063 CATSGPSAYSTLTF TRAV17*01 TRAJ11*01 CASSLQGGNIQYF TRBV6-1*01 TRBJ2-4*01 HLA-A*02:01 B2M MHCI FLYALALLL LMP2 EBV PMID:34811538 tetramer-sort yes amplicon-seq central memory T cells T1D T1D_4 chip0423_112740 PBMC +7064 CAGAAGCNTGKLIS TRAV27*01 TRAJ37*01 CASSIRSSYEQYF TRBV19*01 TRBJ2-7*01 HLA-A*02:01 B2M MHCI GILGFVFTL M1 InfluenzaA PMID:34811538 tetramer-sort yes amplicon-seq transitional T cells between effector and memory populations T1D T1D_4 chip0423_592125 PBMC +7065 CASTVGGPLAKNIQYF TRBV6-2*01,TRBV6-3*01 TRBJ2-4*01 HLA-B*08:01 B2M MHCI RPIIRPATL NP InfluenzaA PMID:34811538 tetramer-sort yes amplicon-seq Naive T cells T1D T1D_5 chip0423_46591 PBMC +7066 CAAAETSYDKVIF TRAV13-1*01 TRAJ50*01 CASSLGQAYEQYF TRBV7-8*01 TRBJ2-7*01 HLA-B*08:01 B2M MHCI FLRGRAYGL EBNA3A EBV PMID:34811538 tetramer-sort yes amplicon-seq effector memory T cells T1D T1D_6 chip0423_540663 PBMC +7067 CASQLAGGTGELFF TRBV24-1*01 TRBJ2-2*01 HLA-B*08:01 B2M MHCI RAKFKQLL BZLF1 EBV PMID:34811538 tetramer-sort yes amplicon-seq effector memory T cells T1D T1D_5 chip0423_711700 PBMC +7068 CSAGRDGTNEKLFF TRBV29-1*01 TRBJ1-4*01 HLA-A*02:01 B2M MHCI GLCTLVAML BLMF1 EBV PMID:34811538 tetramer-sort yes amplicon-seq effector memory T cells T1D T1D_6 chip0423_254962 PBMC +7069 CAAMETSYDKVIF TRAV13-1*01 TRAJ50*01 CATSEMGGSEAFF TRBV24-1*01 TRBJ1-1*01 HLA-B*08:01 B2M MHCI RAKFKQLL BZLF1 EBV PMID:34811538 tetramer-sort yes amplicon-seq effector T cells T1D T1D_5 chip0423_118806 PBMC +7070 CAEKETSYDKAIF TRAV13-1*01 TRAJ50*01 CASSLSGRSNTEAFF TRBV7-9*01 TRBJ1-1*01 HLA-B*08:01 B2M MHCI RAKFKQLL BZLF1 EBV PMID:34811538 tetramer-sort yes amplicon-seq effector memory T cells T1D T1D_5 chip0423_612332 PBMC +7071 CASSDIREGQGEAFF TRBV10-2*01 TRBJ1-1*01 HLA-B*08:01 B2M MHCI QAKWRLQTL EBNA3A EBV PMID:34811538 tetramer-sort yes amplicon-seq central memory T cells T1D T1D_6 chip0423_255991 PBMC +7072 CASSLAVGEGPQHF TRBV7-9*01 TRBJ1-5*01 HLA-B*08:01 B2M MHCI RAKFKQLL BZLF1 EBV PMID:34811538 tetramer-sort yes amplicon-seq effector memory T cells T1D T1D_4 chip0423_837098 PBMC +7073 CASQLAGGTGELFF TRBV24-1*01 TRBJ2-2*01 HLA-B*08:01 B2M MHCI RAKFKQLL BZLF1 EBV PMID:34811538 tetramer-sort yes amplicon-seq effector T cells T1D T1D_5 chip0423_711672 PBMC +7074 CIVSDFYNQGGKLIF TRAV26-1*01 TRAJ23*01 CASSLIAGVYYNEQFF TRBV27*01 TRBJ2-1*01 HLA-B*08:01 B2M MHCI QAKWRLQTL EBNA3A EBV PMID:34811538 tetramer-sort yes amplicon-seq central memory T cells healthy healthy_4 chip0423_676668 PBMC +7075 CAVNSAGNNRKLIW TRAV21*01 TRAJ38*01 HLA-B*08:01 B2M MHCI RMMEYGTTM GAD2 HomoSapiens PMID:34811538 tetramer-sort yes amplicon-seq Naive T cells T1D T1D_5 chip0423_720122 PBMC +7076 CASSFAct??acRA*LFF TRBV28*01 TRBJ1-1*01 HLA-A*02:01 B2M MHCI LLAGIGTVPI PGT HomoSapiens PMID:34811538 tetramer-sort yes amplicon-seq Naive T cells T1D T1D_6 chip0423_426108 PBMC +7077 CASSLSSGGRGEQYF TRBV4-1*01 TRBJ2-7*01 HLA-B*08:01 B2M MHCI RAKFKQLL BZLF1 EBV PMID:34811538 tetramer-sort yes amplicon-seq effector T cells T1D T1D_5 chip0423_209103 PBMC +7078 CASGSARQLTF TRAV12-1*01 TRAJ22*01 CASSPGPDLYAQYF TRBV19*01 TRBJ2-7*01 HLA-A*02:01 B2M MHCI LLAGIGTVPI PGT HomoSapiens PMID:34811538 tetramer-sort yes amplicon-seq transitional T cells between effector and memory populations T1D T1D_4 chip0423_358154 PBMC +7079 CSLPLAGGTSYGKLTF TRAV4*01,TRAV26-2*01 TRAJ52*01 CASSSGQAYEQYF TRBV7-8*01 TRBJ2-7*01 HLA-B*08:01 B2M MHCI FLRGRAYGL EBNA3A EBV PMID:34811538 tetramer-sort yes amplicon-seq effector memory T cells healthy healthy_4 chip0423_349003 PBMC +7080 CASQLAGGTGELFF TRBV24-1*01 TRBJ2-2*01 HLA-B*08:01 B2M MHCI RAKFKQLL BZLF1 EBV PMID:34811538 tetramer-sort yes amplicon-seq effector T cells T1D T1D_5 chip0423_103276 PBMC +7082 CAATETSYDKVIF TRAV13-1*01 TRAJ50*01 CASSPPGRNEKLFF TRBV12-3*01,TRBV12-4*01 TRBJ1-4*01 HLA-B*08:01 B2M MHCI RAKFKQLL BZLF1 EBV PMID:34811538 tetramer-sort yes amplicon-seq effector memory T cells T1D T1D_5 chip0423_441958 PBMC +7083 CAVNIGSNYQLIW TRAV12-2*01 TRAJ33*01 CASQTGAGYTF TRBV6-5*01 TRBJ1-2*01 HLA-A*02:01 B2M MHCI ALAGIGILTV MART1 HomoSapiens PMID:34811538 tetramer-sort yes amplicon-seq Naive T cells T1D T1D_6 chip0423_171296 PBMC +7084 CAMSLSNFGNEKLTL TRAV12-3*01 TRAJ48*01 CASSLAGGEDTGELFF TRBV7-2*01 TRBJ2-2*01 HLA-A*02:01 B2M MHCI LLAGIGTVPI PGT HomoSapiens PMID:34811538 tetramer-sort yes amplicon-seq Naive T cells T1D T1D_4 chip0423_105882 PBMC +7085 CASSLAGREGTQYF TRBV11-3*01 TRBJ2-3*01 HLA-B*08:01 B2M MHCI ELRSRYWAI NP InfluenzaA PMID:34811538 tetramer-sort yes amplicon-seq transitional T cells between effector and memory populations T1D T1D_6 chip0423_588418 PBMC +7086 CASLGPTPEAFF TRBV6-1*01 TRBJ1-1*01 HLA-B*08:01 B2M MHCI ILKLQVFL IAPP HomoSapiens PMID:34811538 tetramer-sort yes amplicon-seq Naive T cells T1D T1D_5 chip0423_442636 PBMC +7087 CAASETSYDKVIF TRAV13-1*01 TRAJ50*01 CASSPPGGGNTGELFF TRBV18*01 TRBJ2-2*01 HLA-B*08:01 B2M MHCI RAKFKQLL BZLF1 EBV PMID:34811538 tetramer-sort yes amplicon-seq effector T cells T1D T1D_5 chip0423_419002 PBMC +7088 CILPLAGGTSYGKLTF TRAV26-2*01 TRAJ52*01 CASSLGQAYEQYF TRBV7-8*01 TRBJ2-7*01 HLA-B*08:01 B2M MHCI FLRGRAYGL EBNA3A EBV PMID:34811538 tetramer-sort yes amplicon-seq effector T cells T1D T1D_6 chip0423_567712 PBMC +7089 CASSPGSSNSPLHF TRBV6-1*01 TRBJ1-6*01 HLA-A*02:01 B2M MHCI TLLANVTAV VP6 RotavirusA PMID:34811538 tetramer-sort yes amplicon-seq transitional T cells between effector and memory populations T1D T1D_6 chip0423_119659 PBMC +7090 CIVREGGGADGLTF TRAV26-1*01 TRAJ45*01 CASSLAVGEGPQHF TRBV7-9*01 TRBJ1-5*01 HLA-B*08:01 B2M MHCI RAKFKQLL BZLF1 EBV PMID:34811538 tetramer-sort yes amplicon-seq effector memory T cells T1D T1D_4 chip0423_216430 PBMC +7091 CAVQYYNTDKLIF TRAV20*01 TRAJ34*01 CASSLKDTNQPQHF TRBV4-1*01 TRBJ1-5*01 HLA-B*08:01 B2M MHCI RPIIRPATL NP InfluenzaA PMID:34811538 tetramer-sort yes amplicon-seq Naive T cells T1D T1D_6 chip0423_574754 PBMC +7092 CASSDIREGQGEAFF TRBV10-2*01 TRBJ1-1*01 HLA-B*08:01 B2M MHCI QAKWRLQTL EBNA3A EBV PMID:34811538 tetramer-sort yes amplicon-seq central memory T cells T1D T1D_6 chip0423_442937 PBMC +7093 CAASAGNAGGTRCGQLTF TRAV29/DV5*01 TRAJ52*01 CASSDIREGQGEAFF TRBV10-2*01 TRBJ1-1*01 HLA-B*08:01 B2M MHCI QAKWRLQTL EBNA3A EBV PMID:34811538 tetramer-sort yes amplicon-seq central memory T cells T1D T1D_6 chip0423_119663 PBMC +7094 CASSPGQVRSYNEQFF TRBV5-6*01 TRBJ2-1*01 HLA-B*08:01 B2M MHCI WPTVRERM Nef HIV-1 PMID:34811538 tetramer-sort yes amplicon-seq Naive T cells T1D T1D_5 chip0423_329337 PBMC +7095 CASSQDTSGRETQYS TRBV4-1*01 TRBJ2-5*01 HLA-B*08:01 B2M MHCI MALWMRLL INS HomoSapiens PMID:34811538 tetramer-sort yes amplicon-seq Naive T cells T1D T1D_5 chip0423_253763 PBMC +7096 CAEMETSYDKVIF TRAV13-2*01 TRAJ50*01 CASSAGTWANYGYTF TRBV3-1*01 TRBJ1-2*01 HLA-B*08:01 B2M MHCI RAKFKQLL BZLF1 EBV PMID:34811538 tetramer-sort yes amplicon-seq effector memory T cells T1D T1D_5 chip0423_96185 PBMC +7097 CAAAETSYDKVIF TRAV13-1*01 TRAJ50*01 CASQLAGGTGELFF TRBV24-1*01 TRBJ2-2*01 HLA-B*08:01 B2M MHCI RAKFKQLL BZLF1 EBV PMID:34811538 tetramer-sort yes amplicon-seq effector T cells T1D T1D_5 chip0423_300351 PBMC +7098 CALSAGNYGQNFVF TRAV19*01 TRAJ26*01 HLA-A*01:01 B2M MHCI CTELKLSDY NP InfluenzaA PMID:34811538 tetramer-sort yes amplicon-seq transitional T cells between effector and memory populations T1D T1D_6 chip0423_131064 PBMC +7099 CAYTSASYRVD*IVF TRAV38-2/DV8*01 TRAJ30*01 CASSQGGGLNYGYTF TRBV4-1*01 TRBJ1-2*01 HLA-A*02:01 B2M MHCI VMNILLQYV GAD65 HomoSapiens PMID:34811538 tetramer-sort yes amplicon-seq Naive T cells T1D T1D_6 chip0423_655090 PBMC +7100 CILPLAGGTSYGKLTF TRAV26-2*01 TRAJ52*01 CASSLGQAYEQYF TRBV7-8*01 TRBJ2-7*01 HLA-B*08:01 B2M MHCI FLRGRAYGL EBNA3A EBV PMID:34811538 tetramer-sort yes amplicon-seq effector memory T cells T1D T1D_4 chip0423_513220 PBMC +7101 SIVREGGGAGGLSF TRAV26-1*01 TRAJ45*01 CASSLAVGEGPQHF TRBV7-9*01 TRBJ1-5*01 HLA-B*08:01 B2M MHCI RAKFKQLL BZLF1 EBV PMID:34811538 tetramer-sort yes amplicon-seq effector T cells T1D T1D_4 chip0423_401584 PBMC +7102 CASSPLAGDEQFF TRBV4-3*01 TRBJ2-1*01 HLA-A*02:01 B2M MHCI RGPGRAFVTI GP160 HIV-1 PMID:34811538 tetramer-sort yes amplicon-seq Naive T cells healthy healthy_4 chip0423_42224 PBMC +7103 CASSQVNNPGDGYTF TRBV14*01 TRBJ1-2*01 HLA-B*08:01 B2M MHCI QAKWRLQTL EBNA3A EBV PMID:34811538 tetramer-sort yes amplicon-seq effector memory T cells T1D T1D_4 chip0423_154413 PBMC +7104 CAGFPWAAGNKLTF TRAV25*01 TRAJ17*01 CASSMMTGDSYNSPLHF TRBV19*01 TRBJ1-6*01 HLA-A*01:01 B2M MHCI CTELKLSDY NP InfluenzaA PMID:34811538 tetramer-sort yes amplicon-seq transitional T cells between effector and memory populations T1D T1D_5 chip0423_695299 PBMC +7105 CASTGTSDSTDTQYF TRBV2*01 TRBJ2-3*01 HLA-A*01:01 B2M MHCI CTELKLSDY NP InfluenzaA PMID:34811538 tetramer-sort yes amplicon-seq effector memory T cells healthy healthy_3 chip0423_463592 PBMC +7106 CAPRSg?tSKIIF TRAV8-1*01 TRAJ30*01 CASSPLSDTQYF TRBV7-6*01 TRBJ2-3*01 HLA-B*08:01 B2M MHCI RAKFKQLL BZLF1 EBV PMID:34811538 tetramer-sort yes amplicon-seq Naive T cells T1D T1D_5 chip0423_856360 PBMC +7107 CAVKDSGYSTLTF TRAV12-2*01 TRAJ11*01 CASSQGTDRSYGYTF TRBV4-1*01 TRBJ1-2*01 HLA-A*02:01 B2M MHCI NLAQDLATV GFAP HomoSapiens PMID:34811538 tetramer-sort yes amplicon-seq Naive T cells T1D T1D_6 chip0423_725968 PBMC +7108 CAVLQDSNYQLIW TRAV12-2*01 TRAJ33*01 CASSDDGMNTEAFF TRBV10-2*01 TRBJ1-1*01 HLA-A*02:01 B2M MHCI CLGGLLTMV LMP2A EBV PMID:34811538 tetramer-sort yes amplicon-seq central memory T cells T1D T1D_4 chip0423_629159 PBMC +7109 CAVGTGFQKLVF TRAV8-4*01 TRAJ8*01 CASSPPDGRPAEAFF TRBV7-9*01 TRBJ1-1*01 HLA-A*01:01 B2M MHCI HSNLNDATY NP InfluenzaA PMID:34811538 tetramer-sort yes amplicon-seq Naive T cells T1D T1D_5 chip0423_541763 PBMC +7110 CASTALAGHTDTQYF TRBV19*01 TRBJ2-3*01 HLA-B*08:01 B2M MHCI ILKGKFQTA NP InfluenzaA PMID:34811538 tetramer-sort yes amplicon-seq Naive T cells T1D T1D_5 chip0423_241676 PBMC +7111 CAVCDGEGAQRLVF TRAV8-6*01 TRAJ54*01 CAGSLAALAGPTTEAFF TRBV7-3*01 TRBJ1-1*01 HLA-B*08:01 B2M MHCI RAKFKQLL BZLF1 EBV PMID:34811538 tetramer-sort yes amplicon-seq effector T cells T1D T1D_4 chip0423_810433 PBMC +7112 CAAAETSYDKVIF TRAV13-1*01 TRAJ50*01 HLA-B*08:01 B2M MHCI RAKFKQLL BZLF1 EBV PMID:34811538 tetramer-sort yes amplicon-seq effector T cells T1D T1D_5 chip0423_532994 PBMC +7114 CAERNTGGFKTIF TRAV13-2*01 TRAJ9*01 HLA-B*08:01 B2M MHCI YAKWKLCSA ZNT8 HomoSapiens PMID:34811538 tetramer-sort yes amplicon-seq effector memory T cells T1D T1D_5 chip0423_510269 PBMC +7115 CASSQVNNPGDGYTF TRBV14*01 TRBJ1-2*01 HLA-B*08:01 B2M MHCI QAKWRLQTL EBNA3A EBV PMID:34811538 tetramer-sort yes amplicon-seq effector memory T cells T1D T1D_4 chip0423_439403 PBMC +7116 CASSLTVLAGPNTEAFF TRBV7-3*01 TRBJ1-1*01 HLA-B*08:01 B2M MHCI RAKFKQLL BZLF1 EBV PMID:34811538 tetramer-sort yes amplicon-seq effector memory T cells T1D T1D_4 chip0423_339655 PBMC +7117 CASSLTVLAGPNTEAFF TRBV7-3*01 TRBJ1-1*01 HLA-B*08:01 B2M MHCI RAKFKQLL BZLF1 EBV PMID:34811538 tetramer-sort yes amplicon-seq effector memory T cells T1D T1D_4 chip0423_862235 PBMC +7118 CAYYHASGGSEQLVF TRAV38-1*01 TRAJ57*01 CASSLTVLAGPNTEAFF TRBV7-3*01 TRBJ1-1*01 HLA-B*08:01 B2M MHCI RAKFKQLL BZLF1 EBV PMID:34811538 tetramer-sort yes amplicon-seq effector memory T cells T1D T1D_4 chip0423_620503 PBMC +7119 CAVRSSNDYKLSF TRAV21*01 TRAJ20*01 CASSPSGWEQYF TRBV12-3*01,TRBV12-4*01 TRBJ2-7*01 HLA-A*02:01 B2M MHCI EAAGIGILTV MART1 HomoSapiens PMID:34811538 tetramer-sort yes amplicon-seq Naive T cells T1D T1D_6 chip0423_337313 PBMC +7120 CALNAIMga?GSQGNLIF TRAV19*01 TRAJ42*01 HLA-B*08:01 B2M MHCI RAKFKQLL BZLF1 EBV PMID:34811538 tetramer-sort yes amplicon-seq effector T cells T1D T1D_5 chip0423_801514 PBMC +7121 CAAAETSYDKMIF TRAV13-1*01 TRAJ50*01 CASSLVGGRNSPLHF TRBV7-9*01 TRBJ1-6*01 HLA-B*08:01 B2M MHCI RAKFKQLL BZLF1 EBV PMID:34811538 tetramer-sort yes amplicon-seq effector memory T cells T1D T1D_5 chip0423_164674 PBMC +7122 CASSPRLLSGTGELFF TRBV7-9*01 TRBJ2-2*01 HLA-A*02:01 B2M MHCI LLAGIGTVPI PGT HomoSapiens PMID:34811538 tetramer-sort yes amplicon-seq central memory T cells healthy healthy_3 chip0423_815851 PBMC +7123 CAWCGSSYEQYF TRBV30*01 TRBJ2-7*01 HLA-B*08:01 B2M MHCI MMIARFKM GAD2 HomoSapiens PMID:34811538 tetramer-sort yes amplicon-seq Naive T cells T1D T1D_4 chip0423_626173 PBMC +7124 CASSLGQAYEQYF TRBV7-8*01 TRBJ2-7*01 HLA-B*08:01 B2M MHCI FLRGRAYGL EBNA3A EBV PMID:34811538 tetramer-sort yes amplicon-seq transitional T cells between effector and memory populations T1D T1D_6 chip0423_234246 PBMC +7125 CILPLAGGTSYGKLTF TRAV26-2*01 TRAJ52*01 CASSLGQAYEQYF TRBV7-8*01 TRBJ2-7*01 HLA-B*08:01 B2M MHCI FLRGRAYGL EBNA3A EBV PMID:34811538 tetramer-sort yes amplicon-seq effector memory T cells T1D T1D_6 chip0423_138513 PBMC +7126 CGADATSGTYKYIF TRAV34*01 TRAJ40*01 CSVGSGEGYEQYF TRBV29-1*01 TRBJ2-7*01 HLA-B*08:01 B2M MHCI RAKFKQLL BZLF1 EBV PMID:34811538 tetramer-sort yes amplicon-seq effector memory T cells T1D T1D_4 chip0423_88173 PBMC +7127 CAAQETSYDKVIF TRAV13-1*01 TRAJ50*01 CASTQVDRPNYGYTF TRBV7-9*01 TRBJ1-2*01 HLA-B*08:01 B2M MHCI RAKFKQLL BZLF1 EBV PMID:34811538 tetramer-sort yes amplicon-seq effector memory T cells T1D T1D_5 chip0423_441112 PBMC +7128 CAASEGGADGLTF TRAV13-1*01 TRAJ45*01 HLA-B*08:01 B2M MHCI RAKFKQLL BZLF1 EBV PMID:34811538 tetramer-sort yes amplicon-seq effector memory T cells T1D T1D_4 chip0423_438373 PBMC +7129 CALWGGSNYKLTF TRAV24*01 TRAJ53*01 CASCSLSSQPQHF TRBV19*01 TRBJ1-5*01 HLA-A*02:01 B2M MHCI GILGFVFTL M1 InfluenzaA PMID:34811538 tetramer-sort yes amplicon-seq transitional T cells between effector and memory populations T1D T1D_6 chip0423_412771 PBMC +7130 CAMREGEGGGFKTIF TRAV14/DV4*01 TRAJ9*01 CASSSGLAGGSHTGELFF TRBV11-1*01 TRBJ2-2*01 HLA-B*08:01 B2M MHCI RAKFKQLL BZLF1 EBV PMID:34811538 tetramer-sort yes amplicon-seq effector memory T cells T1D T1D_5 chip0423_251609 PBMC +7131 CAVRMNYGGSQGNLIF TRAV21*01 TRAJ42*01 CAMASSYEQYF TRBV10-3*01 TRBJ2-7*01 HLA-A*01:01 B2M MHCI HSNLNDATY NP InfluenzaA PMID:34811538 tetramer-sort yes amplicon-seq Naive T cells T1D T1D_6 chip0423_43570 PBMC +7132 CASSLLGEQNSPLHF TRBV7-9*01 TRBJ1-6*01 HLA-B*08:01 B2M MHCI RAKFKQLL BZLF1 EBV PMID:34811538 tetramer-sort yes amplicon-seq effector memory T cells T1D T1D_5 chip0423_852273 PBMC +7133 CILPLAGGTRYGKLTF TRAV26-2*01 TRAJ52*01 CASSLGQAYEQYF TRBV7-8*01 TRBJ2-7*01 HLA-B*08:01 B2M MHCI FLRGRAYGL EBNA3A EBV PMID:34811538 tetramer-sort yes amplicon-seq effector memory T cells T1D T1D_6 chip0423_681574 PBMC +7135 CILPLAGGTSYGKLTF TRAV26-2*01 TRAJ52*01 CASSLGQAYEQYF TRBV7-8*01 TRBJ2-7*01 HLA-B*08:01 B2M MHCI FLRGRAYGL EBNA3A EBV PMID:34811538 tetramer-sort yes amplicon-seq effector T cells T1D T1D_6 chip0423_824165 PBMC +7136 CASSLGQAYEQYF TRBV7-8*01 TRBJ2-7*01 HLA-B*08:01 B2M MHCI FLRGRAYGL EBNA3A EBV PMID:34811538 tetramer-sort yes amplicon-seq transitional T cells between effector and memory populations T1D T1D_6 chip0423_775106 PBMC +7137 CAASMGYGNKLVF TRAV13-1*01 TRAJ47*01 HLA-A*01:01 B2M MHCI CTELKLSDY NP InfluenzaA PMID:34811538 tetramer-sort yes amplicon-seq transitional T cells between effector and memory populations healthy healthy_3 chip0423_239041 PBMC +7138 CASSRIPGQGARPDPNTGELFF TRBV28*01 TRBJ2-2*01 HLA-A*02:01 B2M MHCI CLGGLLTMV LMP2A EBV PMID:34811538 tetramer-sort yes amplicon-seq effector memory T cells T1D T1D_4 chip0423_777433 PBMC +7139 CAVRDIHTGGFKTIF TRAV3*01 TRAJ9*01 HLA-A*02:01 B2M MHCI GILGFVFTL M1 InfluenzaA PMID:34811538 tetramer-sort yes amplicon-seq transitional T cells between effector and memory populations T1D T1D_6 chip0423_332655 PBMC +7140 CAMRAIEGANNLFF TRAV14/DV4*01 TRAJ36*01 CASSLSSgg??ggGRGEQYF TRBV4-1*01 TRBJ2-7*01 HLA-B*08:01 B2M MHCI RAKFKQLL BZLF1 EBV PMID:34811538 tetramer-sort yes amplicon-seq effector T cells T1D T1D_5 chip0423_260309 PBMC +7141 CAVNLGGSHIPTF TRAV12-2*01 TRAJ6*01 CASSYGQAYEQYF TRBV6-5*01 TRBJ2-7*01 HLA-A*02:01 B2M MHCI ALAGIGILTV MART1 HomoSapiens PMID:34811538 tetramer-sort yes amplicon-seq Naive T cells T1D T1D_6 chip0423_480362 PBMC +7142 CASSLGQAYEQYF TRBV7-8*01 TRBJ2-7*01 HLA-B*08:01 B2M MHCI FLRGRAYGL EBNA3A EBV PMID:34811538 tetramer-sort yes amplicon-seq effector memory T cells T1D T1D_6 chip0423_803173 PBMC +7143 CAGLTSGTYKYIF TRAV35*01 TRAJ40*01 CASSGSMEGIEYEQYF TRBV9*01 TRBJ2-7*01 HLA-A*01:01 B2M MHCI LVSDGGPNLY PB1 InfluenzaA PMID:34811538 tetramer-sort yes amplicon-seq Naive T cells healthy healthy_3 chip0423_740853 PBMC +7144 WAFMNHDGPCVTCKFIF TRAV38-1*01 TRAJ40*01 CASSILLGETQYF TRBV19*01 TRBJ2-5*01 HLA-A*02:01 B2M MHCI GILGFVFTL M1 InfluenzaA PMID:34811538 tetramer-sort yes amplicon-seq transitional T cells between effector and memory populations T1D T1D_6 chip0423_702270 PBMC +7145 CIVREGGGAAGLTF TRAV26-1*01 TRAJ45*01 CASSLAVGEGPQHF TRBV7-9*01 TRBJ1-5*01 HLA-B*08:01 B2M MHCI RAKFKQLL BZLF1 EBV PMID:34811538 tetramer-sort yes amplicon-seq effector T cells T1D T1D_4 chip0423_15698 PBMC +7146 CAMTISNFGNEKLTF TRAV12-3*01 TRAJ48*01 CASSPTRDPQREGSEQYF TRBV2*01 TRBJ2-7*01 HLA-A*02:01 B2M MHCI LLAGIGTVPI PGT HomoSapiens PMID:34811538 tetramer-sort yes amplicon-seq Naive T cells T1D T1D_4 chip0423_817520 PBMC +7147 CALNPYNNNDMRF TRAV19*01 TRAJ43*01 CASSDDYEQYF TRBV9*01 TRBJ2-7*01 HLA-A*02:01 B2M MHCI SLAAGVKLL PTPRN HomoSapiens PMID:34811538 tetramer-sort yes amplicon-seq Naive T cells T1D T1D_6 chip0423_810582 PBMC +7148 CAVKTSYIPTF TRAV12-2*01 TRAJ6*01 CASSQGLNTEAFF TRBV4-3*01 TRBJ1-1*01 HLA-A*01:01 B2M MHCI HSNLNDATY NP InfluenzaA PMID:34811538 tetramer-sort yes amplicon-seq Naive T cells T1D T1D_4 chip0423_598604 PBMC +7149 CASSRIPGQGARPDPNTGELYF TRBV28*01 TRBJ2-2*01 HLA-A*02:01 B2M MHCI CLGGLLTMV LMP2A EBV PMID:34811538 tetramer-sort yes amplicon-seq effector memory T cells T1D T1D_4 chip0423_502500 PBMC +7150 CAVRSYNTDKLIF TRAV41*01 TRAJ34*01 CASSIDPQETQYF TRBV5-1*01 TRBJ2-5*01 HLA-B*08:01 B2M MHCI MMIARFKM GAD2 HomoSapiens PMID:34811538 tetramer-sort yes amplicon-seq Naive T cells T1D T1D_5 chip0423_194552 PBMC +7151 CAAIPDNTGELIF TRAV23/DV6*01 TRAJ37*01 CASSTRAGYEQYF TRBV19*01 TRBJ2-7*01 HLA-A*02:01 B2M MHCI GILGFVFTL M1 InfluenzaA PMID:34811538 tetramer-sort yes amplicon-seq Naive T cells T1D T1D_6 chip0423_788156 PBMC +7152 CAAAETSYDKVIF TRAV13-1*01 TRAJ50*01 CASQLAGGTGELFF TRBV24-1*01 TRBJ2-2*01 HLA-B*08:01 B2M MHCI RAKFKQLL BZLF1 EBV PMID:34811538 tetramer-sort yes amplicon-seq effector T cells T1D T1D_5 chip0423_108943 PBMC +7153 CASSLRPVGGYTF TRBV19*01 TRBJ1-2*01 HLA-A*01:01 B2M MHCI VTDAAHLLI ZNT8 HomoSapiens PMID:34811538 tetramer-sort yes amplicon-seq Naive T cells T1D T1D_5 chip0423_734125 PBMC +7154 CIAIIQ??cFNKFYF TRAV26-1*01 TRAJ21*01 CASSMPWTAQETQYF TRBV19*01 TRBJ2-5*01 HLA-B*08:01 B2M MHCI RAKFKQLL BZLF1 EBV PMID:34811538 tetramer-sort yes amplicon-seq effector T cells T1D T1D_5 chip0423_438762 PBMC +7155 CASRLGTGGNSPLHF TRAV36/DV7*01 TRAJ11*01 CASSLGTGGNSPLHF TRBV7-9*01 TRBJ1-6*01 HLA-A*01:01 B2M MHCI HSNLNDATY NP InfluenzaA PMID:34811538 tetramer-sort yes amplicon-seq Naive T cells T1D T1D_5 chip0423_189210 PBMC +7156 CIVREGGGADGLTF TRAV26-1*01 TRAJ45*01 CASSLAVGAGPQHF TRBV7-9*01 TRBJ1-5*01 HLA-B*08:01 B2M MHCI RAKFKQLL BZLF1 EBV PMID:34811538 tetramer-sort yes amplicon-seq effector T cells T1D T1D_4 chip0423_167592 PBMC +7157 LCQSCSPGcg??ccSYTSPLHF TRBV19*01 TRBJ1-6*01 HLA-A*01:01 B2M MHCI CTELKLSDY NP InfluenzaA PMID:34811538 tetramer-sort yes amplicon-seq transitional T cells between effector and memory populations T1D T1D_6 chip0423_80150 PBMC +7158 CSAGRDGTNEKLFF TRBV29-1*01 TRBJ1-4*01 HLA-A*02:01 B2M MHCI GLCTLVAML BLMF1 EBV PMID:34811538 tetramer-sort yes amplicon-seq effector memory T cells T1D T1D_6 chip0423_670250 PBMC +7159 CASSQVNNPGDGYTF TRBV14*01 TRBJ1-2*01 HLA-B*08:01 B2M MHCI QAKWRLQTL EBNA3A EBV PMID:34811538 tetramer-sort yes amplicon-seq effector memory T cells T1D T1D_4 chip0423_402895 PBMC +7160 CAVQDPLNFNKFYF TRAV20*01 TRAJ21*01 CASSLVMGGGYTF TRBV7-2*01 TRBJ1-2*01 HLA-B*08:01 B2M MHCI RAKFKQLL BZLF1 EBV PMID:34811538 tetramer-sort yes amplicon-seq effector memory T cells T1D T1D_5 chip0423_76353 PBMC +7161 CASSYGRGMNTEAFF TRBV27*01 TRBJ1-1*01 HLA-B*08:01 B2M MHCI TLKKMREI GAD2 HomoSapiens PMID:34811538 tetramer-sort yes amplicon-seq Naive T cells T1D T1D_6 chip0423_747555 PBMC +7162 CIAIIP??cFNKFYF TRAV26-1*01 TRAJ21*01 CARPRDM??tVSYEQYF TRBV27*01 TRBJ2-7*01 HLA-B*08:01 B2M MHCI RAKFKQLL BZLF1 EBV PMID:34811538 tetramer-sort yes amplicon-seq effector memory T cells T1D T1D_5 chip0423_360383 PBMC +7163 GAVPGGRRGSLIF TRAV8-3*01 TRAJ42*01 HLA-A*02:01 B2M MHCI YLLEMLWRL LMP1 EBV PMID:34811538 tetramer-sort yes amplicon-seq central memory T cells T1D T1D_4 chip0423_822107 PBMC +7164 CAVQNDYKLSF TRAV20*01 TRAJ20*01 CASSLVGGEEEQYF TRBV5-1*01 TRBJ2-7*01 HLA-B*08:01 B2M MHCI RAKFKQLL BZLF1 EBV PMID:34811538 tetramer-sort yes amplicon-seq effector T cells T1D T1D_5 chip0423_682608 PBMC +7166 CAVVTGGGNKLTF TRAV5*01 TRAJ10*01 CASSQDYGRGGYTF TRBV4-1*01 TRBJ1-2*01 HLA-B*08:01 B2M MHCI CPLSKILL LMP2A EBV PMID:34811538 tetramer-sort yes amplicon-seq effector memory T cells T1D T1D_6 chip0423_344511 PBMC +7167 CAEMETSYDKVIF TRAV13-2*01 TRAJ50*01 HLA-B*08:01 B2M MHCI RAKFKQLL BZLF1 EBV PMID:34811538 tetramer-sort yes amplicon-seq effector memory T cells T1D T1D_5 chip0423_432864 PBMC +7168 CALSEGESRASKIIF TRAV14/DV4*01 TRAJ3*01 CSVGTADGYTF TRBV29-1*01 TRBJ1-2*01 HLA-B*08:01 B2M MHCI RAKFKQLL BZLF1 EBV PMID:34811538 tetramer-sort yes amplicon-seq effector T cells T1D T1D_5 chip0423_280025 PBMC +7169 GAVRAASSGAVSYHLAC TRAV3*01 TRAJ28*01 HLA-B*08:01 B2M MHCI HARIKLKV PTPRN HomoSapiens PMID:34811538 tetramer-sort yes amplicon-seq Naive T cells T1D T1D_6 chip0423_621131 PBMC +7170 CAVRD*EAGNMLTF TRAV3*01 TRAJ39*01 CASRLGPAGLEAIQYS TRBV4-3*01 TRBJ2-4*01 HLA-A*02:01 B2M MHCI LLAGIGTVPI PGT HomoSapiens PMID:34811538 tetramer-sort yes amplicon-seq Naive T cells T1D T1D_4 chip0423_192557 PBMC +7171 CAPPGGGFKTIF TRAV19*01 TRAJ9*01 CSATRDTEAFF TRBV20-1*01 TRBJ1-1*01 HLA-A*02:01 B2M MHCI LLAGIGTVPI PGT HomoSapiens PMID:34811538 tetramer-sort yes amplicon-seq Naive T cells T1D T1D_4 chip0423_779919 PBMC +7172 CAVRDDYGQNFVF TRAV3*01 TRAJ26*01 CASSQDSHSAYEQYF TRBV4-1*01 TRBJ2-7*01 HLA-B*08:01 B2M MHCI RAKFKQLL BZLF1 EBV PMID:34811538 tetramer-sort yes amplicon-seq effector memory T cells T1D T1D_5 chip0423_161514 PBMC +7173 CASSLHPW??gAAYNEQFF TRBV4-3*01 TRBJ2-1*01 HLA-B*08:01 B2M MHCI FLRGRAYGL EBNA3A EBV PMID:34811538 tetramer-sort yes amplicon-seq effector memory T cells T1D T1D_6 chip0423_65038 PBMC +7174 CASTTQRGGQHYGYTF TRBV2*01 TRBJ1-2*01 HLA-B*08:01 B2M MHCI HPRYFNQL GAD2 HomoSapiens PMID:34811538 tetramer-sort yes amplicon-seq central memory T cells T1D T1D_6 chip0423_660075 PBMC +7175 CAMREGLDGGGYNKLIF TRAV14/DV4*01 TRAJ4*01 YASSPSGSGGNNEQFF TRBV12-3*01,TRBV12-4*01 TRBJ2-1*01 HLA-B*08:01 B2M MHCI RAKFKQLL BZLF1 EBV PMID:34811538 tetramer-sort yes amplicon-seq effector memory T cells T1D T1D_5 chip0423_399766 PBMC +7176 CAVNQYSSGGGAAGLPF TRAV12-2*01 TRAJ45*01 HLA-A*02:01 B2M MHCI ALAGIGILTV MART1 HomoSapiens PMID:34811538 tetramer-sort yes amplicon-seq transitional T cells between effector and memory populations T1D T1D_6 chip0423_272601 PBMC +7177 CAARETSYDKVIF TRAV13-1*01 TRAJ50*01 CASSRIGQGVGETQYF TRBV7-9*01 TRBJ2-5*01 HLA-B*08:01 B2M MHCI RAKFKQLL BZLF1 EBV PMID:34811538 tetramer-sort yes amplicon-seq effector memory T cells T1D T1D_5 chip0423_180610 PBMC +7178 CIVREGGGADGLTF TRAV26-1*01 TRAJ45*01 CASSLAVGEGPQHF TRBV7-9*01 TRBJ1-5*01 HLA-B*08:01 B2M MHCI RAKFKQLL BZLF1 EBV PMID:34811538 tetramer-sort yes amplicon-seq effector memory T cells T1D T1D_4 chip0423_139837 PBMC +7179 GAVSGRGcc?TGGGALTF TRAV8-4*01 TRAJ5*01 LCQ*YKga??gcSYEQYF TRBV19*01 TRBJ2-7*01 HLA-A*02:01 B2M MHCI GILGFVFTL M1 InfluenzaA PMID:34811538 tetramer-sort yes amplicon-seq transitional T cells between effector and memory populations T1D T1D_6 chip0423_699951 PBMC +7180 CAVNSGNTPLVF TRAV1-2*01 TRAJ29*01 HLA-B*08:01 B2M MHCI QAKWRLQTL EBNA3A EBV PMID:34811538 tetramer-sort yes amplicon-seq effector memory T cells T1D T1D_4 chip0423_625538 PBMC +7182 CASSTTRAGTWPLHF TRBV7-9*01 TRBJ1-6*01 HLA-B*08:01 B2M MHCI RAKFKQLL BZLF1 EBV PMID:34811538 tetramer-sort yes amplicon-seq effector memory T cells healthy healthy_4 chip0423_111871 PBMC +7183 CAG??tPLF TRAV13-2*01 TRAJ37*01 CASSLTGPIPSTDTQYF TRBV27*01 TRBJ2-3*01 HLA-B*08:01 B2M MHCI QAKWRLQTL EBNA3A EBV PMID:34811538 tetramer-sort yes amplicon-seq effector memory T cells T1D T1D_4 chip0423_67455 PBMC +7185 CAVRRHQAGTALIF TRAV3*01 TRAJ15*01 CASSFGVGDTEETQYF TRBV5-4*01 TRBJ2-5*01 HLA-A*01:01 B2M MHCI CTELKLSDY NP InfluenzaA PMID:34811538 tetramer-sort yes amplicon-seq transitional T cells between effector and memory populations healthy healthy_3 chip0423_624390 PBMC +7186 CAGHWVc?tARLLAF TRAV35*01 TRAJ22*01 CASSLVDRPYEQYF TRBV7-9*01 TRBJ2-7*01 HLA-B*08:01 B2M MHCI RAKFKQLL BZLF1 EBV PMID:34811538 tetramer-sort yes amplicon-seq effector T cells T1D T1D_5 chip0423_129006 PBMC +7187 CAVRVSGTYKYIF TRAV12-2*01 TRAJ40*01 CAWAREDQPQHF TRBV30*01 TRBJ1-5*01 HLA-B*08:01 B2M MHCI YAKWKLCSA ZNT8 HomoSapiens PMID:34811538 tetramer-sort yes amplicon-seq Naive T cells T1D T1D_5 chip0423_791802 PBMC +7188 CAASETSYDKVIF TRAV13-1*01 TRAJ50*01 CASSFTGSSGNTIYF TRBV12-3*01,TRBV12-4*01 TRBJ1-3*01 HLA-B*08:01 B2M MHCI RAKFKQLL BZLF1 EBV PMID:34811538 tetramer-sort yes amplicon-seq effector T cells T1D T1D_5 chip0423_749676 PBMC +7189 CASSLAVGEGPQHF TRAV36/DV7*01 TRAJ27*01 CASSLAIGEGPQHF TRBV7-9*01 TRBJ1-5*01 HLA-B*08:01 B2M MHCI RAKFKQLL BZLF1 EBV PMID:34811538 tetramer-sort yes amplicon-seq effector T cells T1D T1D_4 chip0423_321259 PBMC +7191 CAAAETSYDKVIF TRAV13-1*01 TRAJ50*01 CASQLAGGTGELFF TRBV24-1*01 TRBJ2-2*01 HLA-B*08:01 B2M MHCI RAKFKQLL BZLF1 EBV PMID:34811538 tetramer-sort yes amplicon-seq effector T cells T1D T1D_5 chip0423_828513 PBMC +7192 CASSLGPRNFYEQYF TRBV7-6*01 TRBJ2-7*01 HLA-B*08:01 B2M MHCI YVMVTAAL G6PC2 HomoSapiens PMID:34811538 tetramer-sort yes amplicon-seq Naive T cells T1D T1D_6 chip0423_654267 PBMC +7193 CAVREYGNKLVF TRAV1-2*01 TRAJ47*01 CASSSAGREGTQYF TRBV11-2*01 TRBJ2-3*01 HLA-B*08:01 B2M MHCI ELRSRYWAI NP InfluenzaA PMID:34811538 tetramer-sort yes amplicon-seq transitional T cells between effector and memory populations T1D T1D_6 chip0423_383534 PBMC +7195 CATEGASGYSTLTF TRAV17*01 TRAJ11*01 HLA-A*02:01 B2M MHCI FLYALALLL LMP2 EBV PMID:34811538 tetramer-sort yes amplicon-seq effector memory T cells T1D T1D_6 chip0423_115911 PBMC +7196 CALSDVQAGTALIF TRAV19*01 TRAJ15*01 HLA-B*08:01 B2M MHCI RAKFKQLL BZLF1 EBV PMID:34811538 tetramer-sort yes amplicon-seq effector memory T cells T1D T1D_4 chip0423_781503 PBMC +7197 CACCGTLETGELFF TRBV28*01 TRBJ2-2*01 HLA-A*02:01 B2M MHCI LLAGIGTVPI PGT HomoSapiens PMID:34811538 tetramer-sort yes amplicon-seq Naive T cells T1D T1D_4 chip0423_707363 PBMC +7198 CASSLSSGGRGEQYF TRBV4-1*01 TRBJ2-7*01 HLA-B*08:01 B2M MHCI RAKFKQLL BZLF1 EBV PMID:34811538 tetramer-sort yes amplicon-seq effector T cells T1D T1D_5 chip0423_255583 PBMC +7199 CMAR*Q??cTGKLIF TRAV26-1*01 TRAJ37*01 CASSRQGGNYGYTF TRBV6-1*01 TRBJ1-2*01 HLA-A*02:01 B2M MHCI FLYALALLL LMP2 EBV PMID:34811538 tetramer-sort yes amplicon-seq effector memory T cells T1D T1D_6 chip0423_572687 PBMC +7200 CATPGPASWGKLQF TRAV17*01 TRAJ24*01 CASSPGFYSEAFF TRBV6-1*01 TRBJ1-1*01 HLA-A*02:01 B2M MHCI PLTFGWCYKL NEF InfluenzaA PMID:34811538 tetramer-sort yes amplicon-seq Naive T cells T1D T1D_6 chip0423_763348 PBMC +7201 CASSLLGSTGELFF TRBV5-1*01 TRBJ2-2*01 HLA-B*08:01 B2M MHCI HLKRNIVV GFAP HomoSapiens PMID:34811538 tetramer-sort yes amplicon-seq Naive T cells T1D T1D_5 chip0423_45058 PBMC +7202 CIAVTStc??ccGNQFSF TRAV26-1*01 TRAJ49*01 CSAGRDGTNEKLFF TRBV29-1*01 TRBJ1-4*01 HLA-A*02:01 B2M MHCI GLCTLVAML BLMF1 EBV PMID:34811538 tetramer-sort yes amplicon-seq effector memory T cells T1D T1D_6 chip0423_806687 PBMC +7203 CASSTTRAGTWPLHF TRBV7-9*01 TRBJ1-6*01 HLA-B*08:01 B2M MHCI RAKFKQLL BZLF1 EBV PMID:34811538 tetramer-sort yes amplicon-seq effector memory T cells healthy healthy_4 chip0423_695695 PBMC +7204 CASSQVNNPGDGYTF TRBV14*01 TRBJ1-2*01 HLA-B*08:01 B2M MHCI QAKWRLQTL EBNA3A EBV PMID:34811538 tetramer-sort yes amplicon-seq effector memory T cells T1D T1D_4 chip0423_656964 PBMC +7205 CASSSGDQPQLF TRBV27*01 TRBJ1-5*01 HLA-A*01:01 B2M MHCI STNVGSNTY IAPP HomoSapiens PMID:34811538 tetramer-sort yes amplicon-seq Naive T cells T1D T1D_6 chip0423_310040 PBMC +7206 CAATETSYDKVIF TRAV13-1*01 TRAJ50*01 CASSPPGRNEKLFF TRBV12-3*01,TRBV12-4*01 TRBJ1-4*01 HLA-B*08:01 B2M MHCI RAKFKQLL BZLF1 EBV PMID:34811538 tetramer-sort yes amplicon-seq effector T cells T1D T1D_5 chip0423_766703 PBMC +7207 RILPLAGGASYGQLTF TRAV26-2*01 TRAJ52*01 CASSLGQAYEQYF TRBV7-8*01 TRBJ2-7*01 HLA-B*08:01 B2M MHCI FLRGRAYGL EBNA3A EBV PMID:34811538 tetramer-sort yes amplicon-seq central memory T cells T1D T1D_6 chip0423_545163 PBMC +7208 CASSFEQSYEQYF TRBV11-3*01 TRBJ2-7*01 HLA-A*02:01 B2M MHCI LLAGIGTVPI PGT HomoSapiens PMID:34811538 tetramer-sort yes amplicon-seq Naive T cells T1D T1D_4 chip0423_445050 PBMC +7209 CAMSRSNFGNEKLTF TRAV12-3*01 TRAJ48*01 CASSFAGTGGEQYF TRBV5-4*01 TRBJ2-7*01 HLA-A*02:01 B2M MHCI LLAGIGTVPI PGT HomoSapiens PMID:34811538 tetramer-sort yes amplicon-seq Naive T cells T1D T1D_4 chip0423_64438 PBMC +7211 CASSVGALWNTEAFF TRBV9*01 TRBJ1-1*01 HLA-B*08:01 B2M MHCI RPIIRPATL NP InfluenzaA PMID:34811538 tetramer-sort yes amplicon-seq Naive T cells T1D T1D_5 chip0423_32338 PBMC +7212 CVVSGYAGGTSYGKLTF TRAV8-2*01 TRAJ52*01 HLA-B*08:01 B2M MHCI QAKWRLQTL EBNA3A EBV PMID:34811538 tetramer-sort yes amplicon-seq Naive T cells T1D T1D_6 chip0423_685181 PBMC +7213 CAMREGEGGGFKTIF TRAV14/DV4*01 TRAJ9*01 CASSPMGSMEAFF TRBV28*01 TRBJ1-1*01 HLA-B*08:01 B2M MHCI YLKDQQLL gp160 HIV-1 PMID:34811538 tetramer-sort yes amplicon-seq effector T cells T1D T1D_5 chip0423_711630 PBMC +7214 CAVGRETSYDKVIS TRAV8-3*01 TRAJ50*01 CASSLLGAGTGELFF TRBV7-9*01 TRBJ2-2*01 HLA-B*08:01 B2M MHCI RAKFKQLL BZLF1 EBV PMID:34811538 tetramer-sort yes amplicon-seq effector memory T cells T1D T1D_5 chip0423_867785 PBMC +7215 CAVNKGFKTIF TRAV12-2*01 TRAJ9*01 CASSYGGDTGELFF TRBV4-2*01 TRBJ2-2*01 HLA-A*02:01 B2M MHCI LLAGIGTVPI PGT HomoSapiens PMID:34811538 tetramer-sort yes amplicon-seq Naive T cells T1D T1D_4 chip0423_663377 PBMC +7217 CAISAGNFGNENLTF TRAV12-3*01 TRAJ48*01 CASSTQETQYF TRBV7-9*01 TRBJ2-5*01 HLA-B*08:01 B2M MHCI HLKRNIVV GFAP HomoSapiens PMID:34811538 tetramer-sort yes amplicon-seq Naive T cells T1D T1D_5 chip0423_535560 PBMC +7218 CASSFTSGTDPELFF TRBV7-9*01 TRBJ2-2*01 HLA-B*08:01 B2M MHCI RAKFKQLL BZLF1 EBV PMID:34811538 tetramer-sort yes amplicon-seq effector memory T cells T1D T1D_5 chip0423_499965 PBMC +7219 CAMRAIEGANNLFF TRAV14/DV4*01 TRAJ36*01 HLA-B*08:01 B2M MHCI RAKFKQLL BZLF1 EBV PMID:34811538 tetramer-sort yes amplicon-seq effector T cells T1D T1D_5 chip0423_446019 PBMC +7220 CAASETSYDKVIF TRAV13-1*01 TRAJ50*01 CASSFTGSSGNTIYF TRBV12-3*01,TRBV12-4*01 TRBJ1-3*01 HLA-B*08:01 B2M MHCI RAKFKQLL BZLF1 EBV PMID:34811538 tetramer-sort yes amplicon-seq effector T cells T1D T1D_5 chip0423_17536 PBMC +7221 CASSLTVLAGPNTEAFF TRBV7-3*01 TRBJ1-1*01 HLA-B*08:01 B2M MHCI RAKFKQLL BZLF1 EBV PMID:34811538 tetramer-sort yes amplicon-seq effector memory T cells T1D T1D_4 chip0423_633159 PBMC +7222 CAATETSYDKVIF TRAV13-1*01 TRAJ50*01 CASSLLGQDEA*SPLDF TRBV11-1*01 TRBJ1-6*01 HLA-B*08:01 B2M MHCI RAKFKQLL BZLF1 EBV PMID:34811538 tetramer-sort yes amplicon-seq effector T cells T1D T1D_5 chip0423_219705 PBMC +7223 RIVRETNNDMRF TRAV26-1*01 TRAJ43*01 CASSQTGSLNTEAFF TRBV4-1*01 TRBJ1-1*01 HLA-B*08:01 B2M MHCI RAKFKQLL BZLF1 EBV PMID:34811538 tetramer-sort yes amplicon-seq effector memory T cells healthy healthy_4 chip0423_550262 PBMC +7224 CAAKETSYDKVIF TRAV13-1*01 TRAJ50*01 CASSLLGRSNTEAFF TRBV7-9*01 TRBJ1-1*01 HLA-B*08:01 B2M MHCI RAKFKQLL BZLF1 EBV PMID:34811538 tetramer-sort yes amplicon-seq effector memory T cells T1D T1D_5 chip0423_844833 PBMC +7225 CIVREGGGADGLTF TRAV26-1*01 TRAJ45*01 CASSLAVGEGPQHF TRBV7-9*01 TRBJ1-5*01 HLA-B*08:01 B2M MHCI RAKFKQLL BZLF1 EBV PMID:34811538 tetramer-sort yes amplicon-seq effector T cells T1D T1D_4 chip0423_750182 PBMC +7226 CAAQETSYDKVIF TRAV13-1*01 TRAJ50*01 CASSPLGISYNEQFF TRBV7-9*01 TRBJ2-1*01 HLA-B*08:01 B2M MHCI RAKFKQLL BZLF1 EBV PMID:34811538 tetramer-sort yes amplicon-seq central memory T cells T1D T1D_5 chip0423_293767 PBMC +7227 CSVGTGGTNEKLFF TRBV29-1*01 TRBJ1-4*01 HLA-A*02:01 B2M MHCI GLCTLVAML BLMF1 EBV PMID:34811538 tetramer-sort yes amplicon-seq effector memory T cells T1D T1D_6 chip0423_171028 PBMC +7228 SAGPGLSPFGPAPLTF TRAV35*01 TRAJ48*01 CASSLGPFSEAFF TRBV27*01 TRBJ1-1*01 HLA-B*08:01 B2M MHCI MALWMRLL INS HomoSapiens PMID:34811538 tetramer-sort yes amplicon-seq Naive T cells T1D T1D_4 chip0423_820436 PBMC +7229 CAESTGKLIF TRAV5*01 TRAJ37*01 CSAGRDGTNEKLFF TRBV29-1*01 TRBJ1-4*01 HLA-A*02:01 B2M MHCI GLCTLVAML BLMF1 EBV PMID:34811538 tetramer-sort yes amplicon-seq effector memory T cells T1D T1D_6 chip0423_733947 PBMC +7230 CASSSQGAQGYTF TRBV27*01 TRBJ1-2*01 HLA-A*02:01 B2M MHCI LLSILCIWV ZNT8 HomoSapiens PMID:34811538 tetramer-sort yes amplicon-seq Naive T cells T1D T1D_4 chip0423_531377 PBMC +7232 CASKQFGGPPYEQYF TRBV5-6*01 TRBJ2-7*01 HLA-A*02:01 B2M MHCI MVWGPDPLYV DUF5119 HomoSapiens PMID:34811538 tetramer-sort yes amplicon-seq Naive T cells T1D T1D_4 chip0423_132396 PBMC +7233 CAGAFGSRNTGKLIF TRAV27*01 TRAJ37*01 CASSIRSSYEQYF TRBV19*01 TRBJ2-7*01 HLA-A*02:01 B2M MHCI GILGFVFTL M1 InfluenzaA PMID:34811538 tetramer-sort yes amplicon-seq transitional T cells between effector and memory populations T1D T1D_4 chip0423_63293 PBMC +7234 CAASETSYDKVIF TRAV13-1*01 TRAJ50*01 CASSWLGARYNSPLHF TRBV7-9*01 TRBJ1-6*01 HLA-B*08:01 B2M MHCI RAKFKQLL BZLF1 EBV PMID:34811538 tetramer-sort yes amplicon-seq effector memory T cells T1D T1D_5 chip0423_819203 PBMC +7235 CASRRGSSYNSPLHF TRBV12-3*01,TRBV12-4*01 TRBJ1-6*01 HLA-B*08:01 B2M MHCI RAKFKQLL BZLF1 EBV PMID:34811538 tetramer-sort yes amplicon-seq effector memory T cells T1D T1D_5 chip0423_801084 PBMC +7236 CAMSIPNFGNETLTF TRAV12-3*01 TRAJ48*01 CSAEGGTETPDTQYF TRBV20-1*01 TRBJ2-3*01 HLA-A*02:01 B2M MHCI LLAGIGTVPI PGT HomoSapiens PMID:34811538 tetramer-sort yes amplicon-seq Naive T cells healthy healthy_3 chip0423_647403 PBMC +7237 CAATETSYDKVIF TRAV13-1*01 TRAJ50*01 CASSPLGCNEKLFF TRBV7-9*01 TRBJ1-4*01 HLA-B*08:01 B2M MHCI RAKFKQLL BZLF1 EBV PMID:34811538 tetramer-sort yes amplicon-seq effector memory T cells T1D T1D_5 chip0423_276185 PBMC +7238 CAEMETSYDKVIF TRAV13-2*01 TRAJ50*01 CASSLLGTVDNSPLHF TRBV7-9*01 TRBJ1-6*01 HLA-B*08:01 B2M MHCI RAKFKQLL BZLF1 EBV PMID:34811538 tetramer-sort yes amplicon-seq effector T cells T1D T1D_5 chip0423_37701 PBMC +7240 CAVHQFYF TRAV12-2*01 TRAJ49*01 CASRIAALSTDTQYF TRBV6-4*01 TRBJ2-3*01 HLA-A*02:01 B2M MHCI LLAGIGTVPI PGT HomoSapiens PMID:34811538 tetramer-sort yes amplicon-seq Naive T cells T1D T1D_4 chip0423_282391 PBMC +7241 CAASETSYDKVIF TRAV13-1*01 TRAJ50*01 HLA-B*08:01 B2M MHCI RAKFKQLL BZLF1 EBV PMID:34811538 tetramer-sort yes amplicon-seq effector memory T cells T1D T1D_5 chip0423_150351 PBMC +7243 CAAAETSYDKVIF TRAV13-1*01 TRAJ50*01 CASQLAGGTGELFF TRBV24-1*01 TRBJ2-2*01 HLA-B*08:01 B2M MHCI RAKFKQLL BZLF1 EBV PMID:34811538 tetramer-sort yes amplicon-seq effector memory T cells T1D T1D_5 chip0423_316110 PBMC +7244 CAMSLSNFGNEKLTF TRAV12-3*01 TRAJ48*01 CSVLSGGGTDTQYF TRBV20-1*01 TRBJ2-3*01 HLA-A*02:01 B2M MHCI LLAGIGTVPI PGT HomoSapiens PMID:34811538 tetramer-sort yes amplicon-seq Naive T cells T1D T1D_6 chip0423_278066 PBMC +7245 CASSLGQAYEQYF TRBV7-8*01 TRBJ2-7*01 HLA-B*08:01 B2M MHCI FLRGRAYGL EBNA3A EBV PMID:34811538 tetramer-sort yes amplicon-seq effector T cells T1D T1D_6 chip0423_45416 PBMC +7246 CILPLAGGTNYGKLTF TRAV26-2*01 TRAJ52*01 CASSLGQAYEQYF TRBV7-8*01 TRBJ2-7*01 HLA-B*08:01 B2M MHCI FLRGRAYGL EBNA3A EBV PMID:34811538 tetramer-sort yes amplicon-seq effector memory T cells T1D T1D_6 chip0423_43209 PBMC +7247 CIVREGGGADGLTF TRAV26-1*01 TRAJ45*01 CASSLAVGEGPQHF TRBV7-9*01 TRBJ1-5*01 HLA-B*08:01 B2M MHCI RAKFKQLL BZLF1 EBV PMID:34811538 tetramer-sort yes amplicon-seq effector T cells T1D T1D_4 chip0423_280008 PBMC +7248 CASSSLGGPGHTIYF TRBV7-9*01 TRBJ1-3*01 HLA-B*08:01 B2M MHCI RAKFKQLL BZLF1 EBV PMID:34811538 tetramer-sort yes amplicon-seq effector memory T cells T1D T1D_5 chip0423_256374 PBMC +7249 CASSPDESPYEQYF TRBV5-1*01 TRBJ2-7*01 HLA-A*01:01 B2M MHCI HSNLNDATY NP InfluenzaA PMID:34811538 tetramer-sort yes amplicon-seq Naive T cells T1D T1D_5 chip0423_761996 PBMC +7250 CIVREGGGADGLTF TRAV26-1*01 TRAJ45*01 CASSFLRGDQPQHF TRBV27*01 TRBJ1-5*01 HLA-B*08:01 B2M MHCI RAKFKQLL BZLF1 EBV PMID:34811538 tetramer-sort yes amplicon-seq effector T cells T1D T1D_4 chip0423_226566 PBMC +7251 CAGAGGGPLLF TRAV27*01 TRAJ23*01 CASSHTGDNSPLHF TRBV7-9*01 TRBJ1-6*01 HLA-B*08:01 B2M MHCI RAKFKQLL BZLF1 EBV PMID:34811538 tetramer-sort yes amplicon-seq effector memory T cells T1D T1D_5 chip0423_325438 PBMC +7252 CAMSVSNFGNEKLTF TRAV12-3*01 TRAJ48*01 CASSFGWDGGSLSYEQYF TRBV11-3*01 TRBJ2-7*01 HLA-A*02:01 B2M MHCI LLAGIGTVPI PGT HomoSapiens PMID:34811538 tetramer-sort yes amplicon-seq Naive T cells healthy healthy_3 chip0423_787714 PBMC +7253 CASSLAVGEGPQHF TRBV7-9*01 TRBJ1-5*01 HLA-B*08:01 B2M MHCI RAKFKQLL BZLF1 EBV PMID:34811538 tetramer-sort yes amplicon-seq effector memory T cells T1D T1D_4 chip0423_79536 PBMC +7254 CGADPPSGTYQFLF TRAV34*01 TRAJ40*01 CSVGSGEGVEQFF TRBV29-1*01 TRBJ2-1*01 HLA-B*08:01 B2M MHCI RAKFKQLL BZLF1 EBV PMID:34811538 tetramer-sort yes amplicon-seq effector memory T cells T1D T1D_4 chip0423_729599 PBMC +7255 CAVNSGNTPLVF TRAV1-2*01 TRAJ29*01 CASSQVNNPGDGYTF TRBV14*01 TRBJ1-2*01 HLA-B*08:01 B2M MHCI QAKWRLQTL EBNA3A EBV PMID:34811538 tetramer-sort yes amplicon-seq effector memory T cells T1D T1D_4 chip0423_127164 PBMC +7256 CAVNFNKFYF TRAV8-3*01 TRAJ21*01 CSVGTGGTNEKLFF TRBV29-1*01 TRBJ1-4*01 HLA-A*02:01 B2M MHCI YVLDHLIVV BRLF1 EBV PMID:34811538 tetramer-sort yes amplicon-seq effector T cells healthy healthy_4 chip0423_843794 PBMC +7257 CGADMGRGTYKYIF TRAV34*01 TRAJ40*01 CASSSGTGEGCEQFF TRBV7-3*01 TRBJ2-1*01 HLA-B*08:01 B2M MHCI RAKFKQLL BZLF1 EBV PMID:34811538 tetramer-sort yes amplicon-seq transitional T cells between effector and memory populations T1D T1D_4 chip0423_56429 PBMC +7258 CASSQVNNPGDGYTF TRBV14*01 TRBJ1-2*01 HLA-B*08:01 B2M MHCI QAKWRLQTL EBNA3A EBV PMID:34811538 tetramer-sort yes amplicon-seq effector memory T cells T1D T1D_4 chip0423_814999 PBMC +7259 CAEMETSYDKVIF TRAV13-2*01 TRAJ50*01 CASSSLSGGAGNEQFF TRBV7-9*01 TRBJ2-1*01 HLA-B*08:01 B2M MHCI RAKFKQLL BZLF1 EBV PMID:34811538 tetramer-sort yes amplicon-seq transitional T cells between effector and memory populations T1D T1D_5 chip0423_481093 PBMC +7260 CAVRTDSWGKLQF TRAV1-2*01 TRAJ24*01 CASSSPGTGRGGYTF TRBV27*01 TRBJ1-2*01 HLA-B*08:01 B2M MHCI WMRLLPLL INS HomoSapiens PMID:34811538 tetramer-sort yes amplicon-seq Naive T cells T1D T1D_5 chip0423_121099 PBMC +7261 CAAGETSYDKVIF TRAV13-1*01 TRAJ50*01 CAKPDGGEDTEAFF TRBV6-8*01 TRBJ1-1*01 HLA-B*08:01 B2M MHCI RAKFKQLL BZLF1 EBV PMID:34811538 tetramer-sort yes amplicon-seq effector T cells T1D T1D_5 chip0423_552209 PBMC +7262 CASSDIREGQGEAFF TRBV10-2*01 TRBJ1-1*01 HLA-B*08:01 B2M MHCI QAKWRLQTL EBNA3A EBV PMID:34811538 tetramer-sort yes amplicon-seq transitional T cells between effector and memory populations T1D T1D_6 chip0423_110837 PBMC +7263 CALSFPKRSGGSNYKLTF TRAV9-2*01 TRAJ53*01 HLA-B*08:01 B2M MHCI RAKFKQLL BZLF1 EBV PMID:34811538 tetramer-sort yes amplicon-seq effector memory T cells T1D T1D_5 chip0423_828799 PBMC +7264 CASSDIREGQGEAFF TRBV10-2*01 TRBJ1-1*01 HLA-B*08:01 B2M MHCI QAKWRLQTL EBNA3A EBV PMID:34811538 tetramer-sort yes amplicon-seq transitional T cells between effector and memory populations T1D T1D_6 chip0423_694935 PBMC +7266 CASSLAVGEGPQHF TRBV7-9*01 TRBJ1-5*01 HLA-B*08:01 B2M MHCI RAKFKQLL BZLF1 EBV PMID:34811538 tetramer-sort yes amplicon-seq effector T cells T1D T1D_4 chip0423_473546 PBMC +7267 CSGSGFAYDQSF TRBV20-1*01 TRBJ2-7*01 HLA-B*08:01 B2M MHCI RAKFKQLL BZLF1 EBV PMID:34811538 tetramer-sort yes amplicon-seq effector memory T cells T1D T1D_5 chip0423_307501 PBMC +7268 CASSFGQGGIYEQYF TRBV12-3*01,TRBV12-4*01 TRBJ2-7*01 HLA-B*08:01 B2M MHCI HPRYFNQL GAD2 HomoSapiens PMID:34811538 tetramer-sort yes amplicon-seq Naive T cells T1D T1D_6 chip0423_592694 PBMC +7269 CAVSDGEGAQKLVF TRAV8-6*01 TRAJ54*01 CASSLTVLAGPNTEAFF TRBV7-3*01 TRBJ1-1*01 HLA-B*08:01 B2M MHCI RAKFKQLL BZLF1 EBV PMID:34811538 tetramer-sort yes amplicon-seq effector memory T cells T1D T1D_4 chip0423_794801 PBMC +7270 CAGQRETSYDKVIF TRAV25*01 TRAJ50*01 CASSQLGGVYNEQFF TRBV7-9*01 TRBJ2-1*01 HLA-B*08:01 B2M MHCI RAKFKQLL BZLF1 EBV PMID:34811538 tetramer-sort yes amplicon-seq effector T cells T1D T1D_5 chip0423_512406 PBMC +7271 CAATETSYDKVIF TRAV13-1*01 TRAJ50*01 CASSPLGSNEKLFF TRBV7-9*01 TRBJ1-4*01 HLA-B*08:01 B2M MHCI RAKFKQLL BZLF1 EBV PMID:34811538 tetramer-sort yes amplicon-seq effector memory T cells T1D T1D_5 chip0423_650721 PBMC +7272 CAVDRSNMLTF TRAV12-2*01 TRAJ39*01 CASSPITLTGLNEQFF TRBV3-1*01 TRBJ2-1*01 HLA-A*02:01 B2M MHCI LLAGIGTVPI PGT HomoSapiens PMID:34811538 tetramer-sort yes amplicon-seq Naive T cells T1D T1D_6 chip0423_230817 PBMC +7273 CASSPRAADTQYF TRBV19*01 TRBJ2-3*01 HLA-A*02:01 B2M MHCI GILGFVFTL M1 InfluenzaA PMID:34811538 tetramer-sort yes amplicon-seq transitional T cells between effector and memory populations T1D T1D_6 chip0423_137921 PBMC +7274 CAASETSYDKVIF TRAV13-1*01 TRAJ50*01 CASSPPRGGNTGALFF TRBV18*01 TRBJ2-2*01 HLA-B*08:01 B2M MHCI RAKFKQLL BZLF1 EBV PMID:34811538 tetramer-sort yes amplicon-seq effector memory T cells T1D T1D_5 chip0423_817187 PBMC +7275 CASSGQGGETLFF TRBV5-1*01 TRBJ1-4*01 HLA-A*02:01 B2M MHCI LLAGIGTVPI PGT HomoSapiens PMID:34811538 tetramer-sort yes amplicon-seq Naive T cells T1D T1D_6 chip0423_745248 PBMC +7276 CAVSDGEGAQKLVF TRAV8-6*01 TRAJ54*01 CASSLTVLAGPNTEAFF TRBV7-3*01 TRBJ1-1*01 HLA-B*08:01 B2M MHCI RAKFKQLL BZLF1 EBV PMID:34811538 tetramer-sort yes amplicon-seq effector memory T cells T1D T1D_4 chip0423_335146 PBMC +7277 CAMGLGF TRAV12-3*01 TRAJ27*01 CASSPTPGGSFHEQYF TRBV27*01 TRBJ2-7*01 HLA-A*02:01 B2M MHCI LLAGIGTVPI PGT HomoSapiens PMID:34811538 tetramer-sort yes amplicon-seq Naive T cells T1D T1D_4 chip0423_154327 PBMC +7278 CATVNYGGSQGNLIF TRAV17*01 TRAJ42*01 HLA-A*02:01 B2M MHCI LAVDGVLSV ZNT8 HomoSapiens PMID:34811538 tetramer-sort yes amplicon-seq Naive T cells T1D T1D_6 chip0423_622893 PBMC +7279 CAMGAIAGAFYLFF TRAV14/DV4*01 TRAJ36*01 CASSLSSGGRGEQYF TRBV4-1*01 TRBJ2-7*01 HLA-B*08:01 B2M MHCI RAKFKQLL BZLF1 EBV PMID:34811538 tetramer-sort yes amplicon-seq effector memory T cells T1D T1D_5 chip0423_406468 PBMC +7280 CAVNSGNTPLVF TRAV1-2*01 TRAJ29*01 CASSQVSTPGDGYTF TRBV14*01 TRBJ1-2*01 HLA-B*08:01 B2M MHCI QAKWRLQTL EBNA3A EBV PMID:34811538 tetramer-sort yes amplicon-seq effector memory T cells T1D T1D_4 chip0423_718706 PBMC +7281 CASSDIRAGQGEAFF TRBV10-2*01 TRBJ1-1*01 HLA-B*08:01 B2M MHCI QAKWRLQTL EBNA3A EBV PMID:34811538 tetramer-sort yes amplicon-seq effector memory T cells T1D T1D_6 chip0423_557141 PBMC +7282 CASSWSPAMNTEAFF TRBV6-5*01 TRBJ1-1*01 HLA-B*08:01 B2M MHCI YAKWKLCSA ZNT8 HomoSapiens PMID:34811538 tetramer-sort yes amplicon-seq Naive T cells T1D T1D_4 chip0423_812080 PBMC +7283 CAMSISNFGNEKLTF TRAV12-3*01 TRAJ48*01 HLA-A*02:01 B2M MHCI LLAGIGTVPI PGT HomoSapiens PMID:34811538 tetramer-sort yes amplicon-seq Naive T cells T1D T1D_4 chip0423_192668 PBMC +7285 CASSYSGQGTSEQYF TRBV6-2*01,TRBV6-3*01 TRBJ2-7*01 HLA-A*02:01 B2M MHCI LLAGIGTVPI PGT HomoSapiens PMID:34811538 tetramer-sort yes amplicon-seq Naive T cells T1D T1D_4 chip0423_726686 PBMC +7286 CASSLPPW??gAAYNEQFF TRBV4-3*01 TRBJ2-1*01 HLA-B*08:01 B2M MHCI FLRGRAYGL EBNA3A EBV PMID:34811538 tetramer-sort yes amplicon-seq effector T cells T1D T1D_6 chip0423_857772 PBMC +7287 CASSQVNNPGDGYTF TRBV14*01 TRBJ1-2*01 HLA-B*08:01 B2M MHCI QAKWRLQTL EBNA3A EBV PMID:34811538 tetramer-sort yes amplicon-seq effector memory T cells T1D T1D_4 chip0423_750706 PBMC +7288 CARYWS??cNSTLTF TRAV38-1*01 TRAJ56*01 HLA-A*02:01 B2M MHCI GILGFVFTL M1 InfluenzaA PMID:34811538 tetramer-sort yes amplicon-seq transitional T cells between effector and memory populations T1D T1D_6 chip0423_499175 PBMC +7289 CAVNLGGNTPLVF TRAV12-2*01 TRAJ29*01 CASVSDRLYNEQFF TRBV12-5*01 TRBJ2-1*01 HLA-B*08:01 B2M MHCI RAKFKQLL BZLF1 EBV PMID:34811538 tetramer-sort yes amplicon-seq effector memory T cells T1D T1D_5 chip0423_376143 PBMC +7290 CASSQVNNPGDGYTF TRBV14*01 TRBJ1-2*01 HLA-B*08:01 B2M MHCI QAKWRLQTL EBNA3A EBV PMID:34811538 tetramer-sort yes amplicon-seq effector memory T cells T1D T1D_4 chip0423_36257 PBMC +7291 CVVSVRLg?cTPGQLIF TRAV8-2*01 TRAJ37*01 HLA-B*08:01 B2M MHCI WMRLLPLL INS HomoSapiens PMID:34811538 tetramer-sort yes amplicon-seq transitional T cells between effector and memory populations T1D T1D_6 chip0423_157200 PBMC +7292 CAAQETSYDKVIF TRAV13-1*01 TRAJ50*01 CASSHTRNTEAFF TRBV7-9*01 TRBJ1-1*01 HLA-B*08:01 B2M MHCI RAKFKQLL BZLF1 EBV PMID:34811538 tetramer-sort yes amplicon-seq effector memory T cells T1D T1D_5 chip0423_879464 PBMC +7293 CASSLGQAYEQYF TRBV7-8*01 TRBJ2-7*01 HLA-B*08:01 B2M MHCI FLRGRAYGL EBNA3A EBV PMID:34811538 tetramer-sort yes amplicon-seq effector memory T cells T1D T1D_6 chip0423_710219 PBMC +7294 CAAQ*??cNDMRF TRAV8-3*01 TRAJ43*01 CASSGGPGYEQYF TRBV7-2*01 TRBJ2-7*01 HLA-A*02:01 B2M MHCI ALAGIGILTV MART1 HomoSapiens PMID:34811538 tetramer-sort yes amplicon-seq Naive T cells T1D T1D_6 chip0423_471960 PBMC +7296 CASSVGQGYEQYF TRBV6-1*01 TRBJ2-7*01 HLA-A*02:01 B2M MHCI ALAGIGILTV MART1 HomoSapiens PMID:34811538 tetramer-sort yes amplicon-seq Naive T cells T1D T1D_6 chip0423_616444 PBMC +7297 CAMSAGGYSTLTF TRAV12-3*01 TRAJ11*01 CASSDNNYGYTF TRBV19*01 TRBJ1-2*01 HLA-A*02:01 B2M MHCI VVTGVLVYL ZNT8 HomoSapiens PMID:34811538 tetramer-sort yes amplicon-seq Naive T cells T1D T1D_4 chip0423_61128 PBMC +7298 CILPLAGGTSYGKLTF TRAV26-2*01 TRAJ52*01 CASSSEQAYEQYF TRBV7-8*01 TRBJ2-7*01 HLA-B*08:01 B2M MHCI FLRGRAYGL EBNA3A EBV PMID:34811538 tetramer-sort yes amplicon-seq effector memory T cells healthy healthy_4 chip0423_345659 PBMC +7299 CASSQVNNPGDGYTF TRBV14*01 TRBJ1-2*01 HLA-B*08:01 B2M MHCI QAKWRLQTL EBNA3A EBV PMID:34811538 tetramer-sort yes amplicon-seq effector memory T cells T1D T1D_4 chip0423_100560 PBMC +7300 CASSLTIWEKLFF TRBV28*01 TRBJ1-4*01 HLA-A*02:01 B2M MHCI ALGIGILTV MART1 HomoSapiens PMID:34811538 tetramer-sort yes amplicon-seq Naive T cells T1D T1D_6 chip0423_76993 PBMC +7301 CALSEVNSGNAPLVF TRAV19*01 TRAJ29*01 CASSVEGPSSSDTQYF TRBV9*01 TRBJ2-3*01 HLA-A*02:01 B2M MHCI CLGGLLTMV LMP2A EBV PMID:34811538 tetramer-sort yes amplicon-seq Naive T cells T1D T1D_4 chip0423_41953 PBMC +7302 CAGAATDSWGKIAV TRAV27*01 TRAJ24*01 CSAYSTGDYGYTF TRBV29-1*01 TRBJ1-2*01 HLA-B*08:01 B2M MHCI QAKWRLQTL EBNA3A EBV PMID:34811538 tetramer-sort yes amplicon-seq effector memory T cells T1D T1D_6 chip0423_226892 PBMC +7303 CASSLTVLAGPNTEAFF TRBV7-3*01 TRBJ1-1*01 HLA-B*08:01 B2M MHCI RAKFKQLL BZLF1 EBV PMID:34811538 tetramer-sort yes amplicon-seq effector memory T cells T1D T1D_4 chip0423_184622 PBMC +7304 CILPLAGGTSYGKLTF TRAV26-2*01 TRAJ52*01 CASSLGQAYEQYF TRBV7-8*01 TRBJ2-7*01 HLA-B*08:01 B2M MHCI FLRGRAYGL EBNA3A EBV PMID:34811538 tetramer-sort yes amplicon-seq effector T cells T1D T1D_6 chip0423_482623 PBMC +7305 CIVRTYTSGTYKYIF TRAV26-1*01 TRAJ40*01 HLA-A*02:01 B2M MHCI GILGFVFTL M1 InfluenzaA PMID:34811538 tetramer-sort yes amplicon-seq central memory T cells healthy healthy_3 chip0423_294727 PBMC +7308 CAAAETSYDKVIF TRAV13-1*01 TRAJ50*01 CASQLAGGTGELFF TRBV24-1*01 TRBJ2-2*01 HLA-B*08:01 B2M MHCI RAKFKQLL BZLF1 EBV PMID:34811538 tetramer-sort yes amplicon-seq effector memory T cells T1D T1D_5 chip0423_280921 PBMC +7309 CAATEGQNFVF TRAV13-1*01 TRAJ26*01 CASSLSSGGATDTQYF TRBV7-8*01 TRBJ2-3*01 HLA-B*08:01 B2M MHCI RAKFKQLL BZLF1 EBV PMID:34811538 tetramer-sort yes amplicon-seq effector memory T cells T1D T1D_5 chip0423_736725 PBMC +7310 CASSSLSGGAGNEQFF TRBV7-9*01 TRBJ2-1*01 HLA-B*08:01 B2M MHCI RAKFKQLL BZLF1 EBV PMID:34811538 tetramer-sort yes amplicon-seq effector memory T cells T1D T1D_5 chip0423_549330 PBMC +7311 CSAGGNTEAFF TRBV29-1*01 TRBJ1-1*01 HLA-A*01:01 B2M MHCI ALDIEIATY GFAP HomoSapiens PMID:34811538 tetramer-sort yes amplicon-seq Naive T cells T1D T1D_5 chip0423_184186 PBMC +7312 CASSELGDTQYF TRBV25-1*01 TRBJ2-3*01 HLA-A*02:01 B2M MHCI GILGFVFTL M1 InfluenzaA PMID:34811538 tetramer-sort yes amplicon-seq central memory T cells healthy healthy_4 chip0423_36048 PBMC +7314 CAGAAGGRHGNLIF TRAV27*01 TRAJ42*01 CASSGRATGELFF TRBV19*01 TRBJ2-2*01 HLA-A*02:01 B2M MHCI GILGFVFTL M1 InfluenzaA PMID:34811538 tetramer-sort yes amplicon-seq transitional T cells between effector and memory populations T1D T1D_4 chip0423_708609 PBMC +7315 CAVTSS??cDAPLIF TRAV8-4*01 TRAJ30*01 CASSGTASSYNEQFF TRBV27*01 TRBJ2-1*01 HLA-A*02:01 B2M MHCI GLCTLVAML BLMF1 EBV PMID:34811538 tetramer-sort yes amplicon-seq effector memory T cells T1D T1D_4 chip0423_295373 PBMC +7316 CAGEGAGSYQLTF TRAV25*01 TRAJ28*01 HLA-A*02:01 B2M MHCI CLGGLLTMV LMP2A EBV PMID:34811538 tetramer-sort yes amplicon-seq effector memory T cells T1D T1D_4 chip0423_882967 PBMC +7317 CASSEMWGAPLHF TRBV2*01 TRBJ1-6*01 HLA-A*01:01 B2M MHCI CTELKLSDY NP InfluenzaA PMID:34811538 tetramer-sort yes amplicon-seq effector T cells healthy healthy_3 chip0423_153968 PBMC +7318 CASSLAVGEGPQHF TRBV7-9*01 TRBJ1-5*01 HLA-B*08:01 B2M MHCI RAKFKQLL BZLF1 EBV PMID:34811538 tetramer-sort yes amplicon-seq effector memory T cells T1D T1D_4 chip0423_7413 PBMC +7319 CIVREGGGADGLTF TRAV26-1*01 TRAJ45*01 CASSLAVGEGPQHF TRBV7-9*01 TRBJ1-5*01 HLA-B*08:01 B2M MHCI RAKFKQLL BZLF1 EBV PMID:34811538 tetramer-sort yes amplicon-seq effector T cells T1D T1D_4 chip0423_646612 PBMC +7320 CAVGGLHTGGFHTVV TRAV3*01 TRAJ9*01 HLA-A*02:01 B2M MHCI GILGFVFTL M1 InfluenzaA PMID:34811538 tetramer-sort yes amplicon-seq transitional T cells between effector and memory populations T1D T1D_6 chip0423_621920 PBMC +7321 CIVREGGGADGLTF TRAV26-1*01 TRAJ45*01 CASSLAVGEGPQHF TRBV7-9*01 TRBJ1-5*01 HLA-B*08:01 B2M MHCI RAKFKQLL BZLF1 EBV PMID:34811538 tetramer-sort yes amplicon-seq effector memory T cells T1D T1D_4 chip0423_96210 PBMC +7322 CAGAATDSWGKLQF TRAV27*01 TRAJ24*01 CSAYSTGDYGYTF TRBV29-1*01 TRBJ1-2*01 HLA-B*08:01 B2M MHCI QAKWRLQTL EBNA3A EBV PMID:34811538 tetramer-sort yes amplicon-seq effector memory T cells T1D T1D_6 chip0423_19994 PBMC +7323 CAAAETSYDKVIF TRAV13-1*01 TRAJ50*01 CASQLAGGTGELFF TRBV24-1*01 TRBJ2-2*01 HLA-B*08:01 B2M MHCI RAKFKQLL BZLF1 EBV PMID:34811538 tetramer-sort yes amplicon-seq effector memory T cells T1D T1D_5 chip0423_697246 PBMC +7325 CASSDIREGQGEAFF TRBV10-2*01 TRBJ1-1*01 HLA-B*08:01 B2M MHCI QAKWRLQTL EBNA3A EBV PMID:34811538 tetramer-sort yes amplicon-seq central memory T cells T1D T1D_6 chip0423_367148 PBMC +7326 CIVRVLFSNARPMF TRAV26-1*01 TRAJ31*01 CATKTGIDEQYF TRBV12-3*01,TRBV12-4*01 TRBJ2-7*01 HLA-B*08:01 B2M MHCI NLIFKWIL G6PC2 HomoSapiens PMID:34811538 tetramer-sort yes amplicon-seq Naive T cells T1D T1D_6 chip0423_348413 PBMC +7327 CAASETSYDKVIF TRAV13-1*01 TRAJ50*01 CSAGRDGTNEKLFF TRBV29-1*01 TRBJ1-4*01 HLA-B*08:01 B2M MHCI RAKFKQLL BZLF1 EBV PMID:34811538 tetramer-sort yes amplicon-seq effector memory T cells T1D T1D_5 chip0423_670320 PBMC +7328 CILMETSYDKVIF TRAV26-2*01 TRAJ50*01 CASSFTGNGEQFF TRBV12-3*01,TRBV12-4*01 TRBJ2-1*01 HLA-B*08:01 B2M MHCI RAKFKQLL BZLF1 EBV PMID:34811538 tetramer-sort yes amplicon-seq effector T cells T1D T1D_5 chip0423_525663 PBMC +7329 CAGPGK??cQGNLIF TRAV27*01 TRAJ42*01 CASSRQGGAGGYTF TRBV6-1*01 TRBJ1-2*01 HLA-A*02:01 B2M MHCI FLYALALLL LMP2 EBV PMID:34811538 tetramer-sort yes amplicon-seq central memory T cells healthy healthy_3 chip0423_274397 PBMC +7330 CASSQDMASGYNEQFF TRBV3-1*01 TRBJ2-1*01 HLA-B*08:01 B2M MHCI HARIKLKV PTPRN HomoSapiens PMID:34811538 tetramer-sort yes amplicon-seq Naive T cells T1D T1D_4 chip0423_724408 PBMC +7331 CAVPGFSGGYNKLIF TRAV8-1*01 TRAJ4*01 CASSPGETRGEQYF TRBV5-6*01 TRBJ2-7*01 HLA-A*02:01 B2M MHCI YLLEMLWRL LMP1 EBV PMID:34811538 tetramer-sort yes amplicon-seq effector memory T cells T1D T1D_4 chip0423_236342 PBMC +7332 CATALSNFGHEKFPF TRAV12-3*01 TRAJ48*01 HLA-A*02:01 B2M MHCI LLAGIGTVPI PGT HomoSapiens PMID:34811538 tetramer-sort yes amplicon-seq Naive T cells healthy healthy_4 chip0423_690721 PBMC +7333 CAVLMEYGNKLVF TRAV12-2*01 TRAJ47*01 CAWSPLGNEQFF TRBV30*01 TRBJ2-1*01 HLA-B*08:01 B2M MHCI SRKHKWKL GAD2 HomoSapiens PMID:34811538 tetramer-sort yes amplicon-seq Naive T cells T1D T1D_5 chip0423_620867 PBMC +7334 CILPLAGGTSYGKLTF TRAV26-2*01 TRAJ52*01 CASSLGQAYEQYF TRBV7-8*01 TRBJ2-7*01 HLA-B*08:01 B2M MHCI FLRGRAYGL EBNA3A EBV PMID:34811538 tetramer-sort yes amplicon-seq effector memory T cells T1D T1D_6 chip0423_304299 PBMC +7335 CAEMETSYDKVIF TRAV13-2*01 TRAJ50*01 LASSSLSGGAGNEQFF TRBV7-9*01 TRBJ2-1*01 HLA-B*08:01 B2M MHCI RAKFKQLL BZLF1 EBV PMID:34811538 tetramer-sort yes amplicon-seq effector T cells T1D T1D_5 chip0423_271711 PBMC +7336 CAVRGRPSCtg??gtGTSYGKPTF TRAV1-1*01 TRAJ52*01 CSAIEFRDPNQPQHF TRBV20-1*01 TRBJ1-5*01 HLA-A*02:01 B2M MHCI YLLEMLWRL LMP1 EBV PMID:34811538 tetramer-sort yes amplicon-seq central memory T cells T1D T1D_4 chip0423_859232 PBMC +7338 CASSLAVGEGPQHF TRBV7-9*01 TRBJ1-5*01 HLA-B*08:01 B2M MHCI RAKFKQLL BZLF1 EBV PMID:34811538 tetramer-sort yes amplicon-seq effector memory T cells T1D T1D_4 chip0423_797447 PBMC +7339 CASSPLGSNEKLFF TRBV7-9*01 TRBJ1-4*01 HLA-B*08:01 B2M MHCI RAKFKQLL BZLF1 EBV PMID:34811538 tetramer-sort yes amplicon-seq effector T cells T1D T1D_5 chip0423_724452 PBMC +7340 CASGGSYIPTF TRAV12-1*01 TRAJ6*01 CASSPGLATGELFF TRBV3-1*01 TRBJ2-2*01 HLA-A*02:01 B2M MHCI LLAGIGTVPI PGT HomoSapiens PMID:34811538 tetramer-sort yes amplicon-seq Naive T cells healthy healthy_3 chip0423_716166 PBMC +7341 CVLRMSPCat??ctGARYIPTF TRAV8-2*01 TRAJ6*01 CAGGPcg??ggGRAFL TRBV2*01 TRBJ1-1*01 HLA-A*02:01 B2M MHCI LLAGIGTVPI PGT HomoSapiens PMID:34811538 tetramer-sort yes amplicon-seq Naive T cells T1D T1D_4 chip0423_109669 PBMC +7342 CASRHVDNPGAGYTF TRBV14*01 TRBJ1-2*01 HLA-B*08:01 B2M MHCI QAKWRLQTL EBNA3A EBV PMID:34811538 tetramer-sort yes amplicon-seq effector memory T cells T1D T1D_4 chip0423_658899 PBMC +7343 CPASETAYDKVIF TRAV13-1*01 TRAJ50*01 HLA-A*01:01 B2M MHCI CTELKLSDY NP InfluenzaA PMID:34811538 tetramer-sort yes amplicon-seq effector T cells healthy healthy_3 chip0423_552019 PBMC +7344 CAVWRDGAYEQYF TRBV28*01 TRBJ2-7*01 HLA-A*02:01 B2M MHCI YLLEMLWRL LMP1 EBV PMID:34811538 tetramer-sort yes amplicon-seq effector memory T cells T1D T1D_4 chip0423_148935 PBMC +7345 CVVNGENARLMF TRAV12-1*01 TRAJ31*01 CASSRLGVGTWDEQFF TRBV7-9*01 TRBJ2-1*01 HLA-A*01:01 B2M MHCI CTELKLSDY NP InfluenzaA PMID:34811538 tetramer-sort yes amplicon-seq effector T cells healthy healthy_3 chip0423_851176 PBMC +7346 CASSLAVGEGPQHF TRBV7-9*01 TRBJ1-5*01 HLA-B*08:01 B2M MHCI RAKFKQLL BZLF1 EBV PMID:34811538 tetramer-sort yes amplicon-seq effector T cells T1D T1D_4 chip0423_794943 PBMC +7347 CASSWLGARYNSPLHF TRAV20*01 TRAJ11*01 CASSWLGDRYNSPLHF TRBV7-9*01 TRBJ1-6*01 HLA-B*08:01 B2M MHCI RAKFKQLL BZLF1 EBV PMID:34811538 tetramer-sort yes amplicon-seq transitional T cells between effector and memory populations T1D T1D_5 chip0423_102108 PBMC +7348 CAAMETSYDKVIF TRAV13-1*01 TRAJ50*01 HLA-B*08:01 B2M MHCI RAKFKQLL BZLF1 EBV PMID:34811538 tetramer-sort yes amplicon-seq effector memory T cells T1D T1D_5 chip0423_563815 PBMC +7349 CALWEVFPGANNLFF TRAV14/DV4*01 TRAJ36*01 HLA-A*02:01 B2M MHCI YLLPGWKL VP3 RotavirusA PMID:34811538 tetramer-sort yes amplicon-seq Naive T cells T1D T1D_4 chip0423_709086 PBMC +7350 CIVREGGGAAGLPF TRAV26-1*01 TRAJ45*01 CASSLAVGEGPQHF TRBV7-9*01 TRBJ1-5*01 HLA-B*08:01 B2M MHCI RAKFKQLL BZLF1 EBV PMID:34811538 tetramer-sort yes amplicon-seq effector T cells T1D T1D_4 chip0423_62664 PBMC +7351 CAAKETSYDKVIF TRAV13-1*01 TRAJ50*01 CASSLLGRSNTEAFF TRBV7-9*01 TRBJ1-1*01 HLA-B*08:01 B2M MHCI RAKFKQLL BZLF1 EBV PMID:34811538 tetramer-sort yes amplicon-seq effector T cells T1D T1D_5 chip0423_343368 PBMC +7352 CIVREGGGADGLPF TRAV26-1*01 TRAJ45*01 CASSLAVGEGPQHF TRBV7-9*01 TRBJ1-5*01 HLA-B*08:01 B2M MHCI RAKFKQLL BZLF1 EBV PMID:34811538 tetramer-sort yes amplicon-seq effector memory T cells T1D T1D_4 chip0423_349049 PBMC +7353 CAAAETSYDKVIF TRAV13-1*01 TRAJ50*01 CASQLAGGTGELFF TRBV24-1*01 TRBJ2-2*01 HLA-B*08:01 B2M MHCI RAKFKQLL BZLF1 EBV PMID:34811538 tetramer-sort yes amplicon-seq effector T cells T1D T1D_5 chip0423_219145 PBMC +7354 CAVTSYGKLTF TRAV12-2*01 TRAJ52*01 CSVEGGGVAASLDNEQFF TRBV29-1*01 TRBJ2-1*01 HLA-A*02:01 B2M MHCI LLAGIGTVPI PGT HomoSapiens PMID:34811538 tetramer-sort yes amplicon-seq transitional T cells between effector and memory populations T1D T1D_4 chip0423_155041 PBMC +7355 CAVEMTTDSWGKLQF TRAV21*01 TRAJ24*01 HLA-B*08:01 B2M MHCI RAKFKQLL BZLF1 EBV PMID:34811538 tetramer-sort yes amplicon-seq Naive T cells T1D T1D_5 chip0423_82169 PBMC +7356 CALSEAKga?GGAAGLPF TRAV19*01 TRAJ45*01 CASSLSGKAFF TRBV28*01 TRBJ1-1*01 HLA-A*02:01 B2M MHCI ALWMRLLPL PREINS HomoSapiens PMID:34811538 tetramer-sort yes amplicon-seq Naive T cells healthy healthy_3 chip0423_595315 PBMC +7357 CILPLAGGTSYGKLTF TRAV26-2*01 TRAJ52*01 CASSLGQAYEQYF TRBV7-8*01 TRBJ2-7*01 HLA-B*08:01 B2M MHCI FLRGRAYGL EBNA3A EBV PMID:34811538 tetramer-sort yes amplicon-seq central memory T cells T1D T1D_6 chip0423_581399 PBMC +7358 CAEMETSYDKVIF TRAV13-2*01 TRAJ50*01 CASSSLSGGARNEQFF TRBV7-9*01 TRBJ2-1*01 HLA-B*08:01 B2M MHCI RAKFKQLL BZLF1 EBV PMID:34811538 tetramer-sort yes amplicon-seq effector memory T cells T1D T1D_5 chip0423_666590 PBMC +7359 CILPLAGGTSYGKLTF TRAV26-2*01 TRAJ52*01 CASSLGQAYEQYF TRBV7-8*01 TRBJ2-7*01 HLA-B*08:01 B2M MHCI FLRGRAYGL EBNA3A EBV PMID:34811538 tetramer-sort yes amplicon-seq effector memory T cells T1D T1D_4 chip0423_767620 PBMC +7360 CAVEDQGRSYNTDKLIF TRAV2*01 TRAJ34*01 CASSFSGETQYF TRBV28*01 TRBJ2-5*01 HLA-B*08:01 B2M MHCI RAKFKQLL BZLF1 EBV PMID:34811538 tetramer-sort yes amplicon-seq effector T cells healthy healthy_4 chip0423_175279 PBMC +7361 CILPLEGGTSYGKLTF TRAV26-2*01 TRAJ52*01 CASSSGQAYEQYF TRBV7-8*01 TRBJ2-7*01 HLA-B*08:01 B2M MHCI FLRGRAYGL EBNA3A EBV PMID:34811538 tetramer-sort yes amplicon-seq effector memory T cells T1D T1D_4 chip0423_158147 PBMC +7362 CASSPLTDTQYF TRBV27*01 TRBJ2-3*01 HLA-B*08:01 B2M MHCI RAKFKQLL BZLF1 EBV PMID:34811538 tetramer-sort yes amplicon-seq effector memory T cells T1D T1D_4 chip0423_19843 PBMC +7363 CASSLLGRSNTEAFF TRBV7-9*01 TRBJ1-1*01 HLA-B*08:01 B2M MHCI RAKFKQLL BZLF1 EBV PMID:34811538 tetramer-sort yes amplicon-seq effector T cells T1D T1D_5 chip0423_235831 PBMC +7364 CASSQGPTGEQYF TRBV4-1*01 TRBJ2-7*01 HLA-B*08:01 B2M MHCI YAKWKLCSA ZNT8 HomoSapiens PMID:34811538 tetramer-sort yes amplicon-seq Naive T cells T1D T1D_5 chip0423_762643 PBMC +7365 CASSVSGAPYEQYF TRBV9*01 TRBJ2-7*01 HLA-B*08:01 B2M MHCI FLRGRAYGL EBNA3A EBV PMID:34811538 tetramer-sort yes amplicon-seq effector T cells T1D T1D_6 chip0423_602780 PBMC +7366 CALVNYGGSQGNLIF TRAV19*01 TRAJ42*01 CAVWRDGAYEQYF TRBV28*01 TRBJ2-7*01 HLA-A*02:01 B2M MHCI YLLEMLWRL LMP1 EBV PMID:34811538 tetramer-sort yes amplicon-seq effector memory T cells T1D T1D_4 chip0423_267480 PBMC +7367 CASSDIREGQGEAFF TRBV10-2*01 TRBJ1-1*01 HLA-B*08:01 B2M MHCI QAKWRLQTL EBNA3A EBV PMID:34811538 tetramer-sort yes amplicon-seq effector memory T cells T1D T1D_6 chip0423_822128 PBMC +7368 CILPLAGGTSYGKLTF TRAV26-2*01 TRAJ52*01 CASSLGQAYEQYF TRBV7-8*01 TRBJ2-7*01 HLA-B*08:01 B2M MHCI FLRGRAYGL EBNA3A EBV PMID:34811538 tetramer-sort yes amplicon-seq effector memory T cells T1D T1D_6 chip0423_148084 PBMC +7369 CASSFSGSANTEAFF TRAV9-1*01,TRAV8-1*01 TRAJ40*01 CASSFSGSANTEAFF TRBV12-3*01,TRBV12-4*01 TRBJ1-1*01 HLA-B*08:01 B2M MHCI RAKFKQLL BZLF1 EBV PMID:34811538 tetramer-sort yes amplicon-seq effector memory T cells T1D T1D_5 chip0423_679817 PBMC +7370 CASQGGSQGNLIF TRAV20*01 TRAJ42*01 CASSLGGQTETQYF TRBV13*01 TRBJ2-5*01 HLA-A*02:01 B2M MHCI TLLANVTAV VP6 RotavirusA PMID:34811538 tetramer-sort yes amplicon-seq transitional T cells between effector and memory populations T1D T1D_6 chip0423_267892 PBMC +7372 CAAAETSYDKVIF TRAV13-1*01 TRAJ50*01 CASQLAGGTGELFF TRBV24-1*01 TRBJ2-2*01 HLA-B*08:01 B2M MHCI RAKFKQLL BZLF1 EBV PMID:34811538 tetramer-sort yes amplicon-seq effector memory T cells T1D T1D_5 chip0423_840814 PBMC +7374 CASSLAVGEGPQHF TRBV7-9*01 TRBJ1-5*01 HLA-B*08:01 B2M MHCI RAKFKQLL BZLF1 EBV PMID:34811538 tetramer-sort yes amplicon-seq effector memory T cells T1D T1D_4 chip0423_49131 PBMC +7375 CASSVQGTTEAFF TRBV9*01 TRBJ1-1*01 HLA-A*01:01 B2M MHCI PTEKGANEY ZNT8 HomoSapiens PMID:34811538 tetramer-sort yes amplicon-seq central memory T cells healthy healthy_3 chip0423_717860 PBMC +7376 CASSLAVGEGPQHF TRBV7-9*01 TRBJ1-5*01 HLA-B*08:01 B2M MHCI RAKFKQLL BZLF1 EBV PMID:34811538 tetramer-sort yes amplicon-seq effector memory T cells T1D T1D_4 chip0423_70657 PBMC +7377 CAMRAIEGANNLFF TRAV14/DV4*01 TRAJ36*01 HLA-B*08:01 B2M MHCI RAKFKQLL BZLF1 EBV PMID:34811538 tetramer-sort yes amplicon-seq effector T cells T1D T1D_5 chip0423_48329 PBMC +7378 CAVYNTDKLIF TRAV12-2*01 TRAJ34*01 CASSQVGNYGYTF TRBV6-1*01 TRBJ1-2*01 HLA-A*01:01 B2M MHCI GSHLVEALY INS HomoSapiens PMID:34811538 tetramer-sort yes amplicon-seq Naive T cells T1D T1D_5 chip0423_294387 PBMC +7379 SILPLAVVACYG*LTF TRAV26-2*01 TRAJ52*01 CASSLGQAYEQYF TRBV7-8*01 TRBJ2-7*01 HLA-B*08:01 B2M MHCI FLRGRAYGL EBNA3A EBV PMID:34811538 tetramer-sort yes amplicon-seq effector memory T cells T1D T1D_6 chip0423_261594 PBMC +7380 CASSYGQPQHF TRBV6-2*01,TRBV6-3*01,TRBV6-1*01 TRBJ1-5*01 HLA-A*02:01 B2M MHCI KLQVFLIVL IAPP HomoSapiens PMID:34811538 tetramer-sort yes amplicon-seq Naive T cells T1D T1D_6 chip0423_32452 PBMC +7381 CASSLAVGEGPQHF TRBV7-9*01 TRBJ1-5*01 HLA-B*08:01 B2M MHCI RAKFKQLL BZLF1 EBV PMID:34811538 tetramer-sort yes amplicon-seq effector T cells T1D T1D_4 chip0423_629827 PBMC +7382 CASSLHPW??gAAYNEQFF TRBV4-3*01 TRBJ2-1*01 HLA-B*08:01 B2M MHCI FLRGRAYGL EBNA3A EBV PMID:34811538 tetramer-sort yes amplicon-seq effector T cells T1D T1D_6 chip0423_237435 PBMC +7383 CAAAETSYDKVTF TRAV13-1*01 TRAJ50*01 CASQLAEGTGELFF TRBV24-1*01 TRBJ2-2*01 HLA-B*08:01 B2M MHCI RAKFKQLL BZLF1 EBV PMID:34811538 tetramer-sort yes amplicon-seq effector memory T cells T1D T1D_5 chip0423_200068 PBMC +7384 CAVSDGEGAQQLVF TRAV8-6*01 TRAJ54*01 CASSLTVLAGPNTEAFF TRBV7-3*01 TRBJ1-1*01 HLA-B*08:01 B2M MHCI RAKFKQLL BZLF1 EBV PMID:34811538 tetramer-sort yes amplicon-seq effector memory T cells T1D T1D_4 chip0423_24378 PBMC +7385 CAMRATVGGASYGPLSF TRAV14/DV4*01 TRAJ52*01 CASSDIREGQGEAFF TRBV10-2*01 TRBJ1-1*01 HLA-B*08:01 B2M MHCI QAKWRLQTL EBNA3A EBV PMID:34811538 tetramer-sort yes amplicon-seq central memory T cells T1D T1D_6 chip0423_864386 PBMC +7386 CAVTSLYSGAGSYQLTF TRAV3*01 TRAJ28*01 CASSLTGPIPSTDTQYF TRBV27*01 TRBJ2-3*01 HLA-B*08:01 B2M MHCI QAKWRLQTL EBNA3A EBV PMID:34811538 tetramer-sort yes amplicon-seq effector memory T cells T1D T1D_4 chip0423_725024 PBMC +7388 CAVEGSNYQLIW TRAV21*01 TRAJ33*01 CASSQGYNEQFF TRBV7-9*01 TRBJ2-1*01 HLA-A*01:01 B2M MHCI HSNLNDATY NP InfluenzaA PMID:34811538 tetramer-sort yes amplicon-seq transitional T cells between effector and memory populations T1D T1D_5 chip0423_220909 PBMC +7389 CILPLAGGTCCWSLPL TRAV26-2*01 TRAJ52*01 CASSLGQAYEQYF TRBV7-8*01 TRBJ2-7*01 HLA-B*08:01 B2M MHCI FLRGRAYGL EBNA3A EBV PMID:34811538 tetramer-sort yes amplicon-seq effector memory T cells T1D T1D_6 chip0423_812072 PBMC +7390 CSASRDSYEQYF TRBV20-1*01 TRBJ2-7*01 HLA-A*02:01 B2M MHCI YLLEMLWRL LMP1 EBV PMID:34811538 tetramer-sort yes amplicon-seq central memory T cells T1D T1D_4 chip0423_424170 PBMC +7391 CAMRESYNQGGKLIF TRAV14/DV4*01 TRAJ23*01 CASTWGGLGTEAFF TRBV19*01 TRBJ1-1*01 HLA-B*08:01 B2M MHCI RAKFKQLL BZLF1 EBV PMID:34811538 tetramer-sort yes amplicon-seq effector T cells T1D T1D_5 chip0423_820065 PBMC +7392 CAAGAGGH??gGGGTKLPF TRAV8-3*01 TRAJ10*01 CASRLVPSYEQYF TRBV6-2*01,TRBV6-3*01 TRBJ2-7*01 HLA-B*08:01 B2M MHCI YAYAKWKL ZNT8 HomoSapiens PMID:34811538 tetramer-sort yes amplicon-seq central memory T cells T1D T1D_6 chip0423_223549 PBMC +7393 CASSDIREGQGEAFF TRBV10-2*01 TRBJ1-1*01 HLA-B*08:01 B2M MHCI QAKWRLQTL EBNA3A EBV PMID:34811538 tetramer-sort yes amplicon-seq effector memory T cells T1D T1D_6 chip0423_256159 PBMC +7394 CAASETSYDKVIF TRAV13-1*01 TRAJ50*01 CASSPLGDSAYEQYF TRBV7-9*01 TRBJ2-7*01 HLA-B*08:01 B2M MHCI RAKFKQLL BZLF1 EBV PMID:34811538 tetramer-sort yes amplicon-seq central memory T cells T1D T1D_5 chip0423_722755 PBMC +7396 CAAAETSYDKVIF TRAV13-1*01 TRAJ50*01 CASQLAGGTGELFF TRBV24-1*01 TRBJ2-2*01 HLA-B*08:01 B2M MHCI RAKFKQLL BZLF1 EBV PMID:34811538 tetramer-sort yes amplicon-seq effector T cells T1D T1D_5 chip0423_508365 PBMC +7397 CAATETSYDKVIF TRAV13-1*01 TRAJ50*01 CASSRLGTEETQYF TRBV7-9*01 TRBJ2-5*01 HLA-B*08:01 B2M MHCI RAKFKQLL BZLF1 EBV PMID:34811538 tetramer-sort yes amplicon-seq effector memory T cells T1D T1D_5 chip0423_712541 PBMC +7398 CASSLAGREGTQYF TRBV11-3*01 TRBJ2-3*01 HLA-B*08:01 B2M MHCI ELRSRYWAI NP InfluenzaA PMID:34811538 tetramer-sort yes amplicon-seq transitional T cells between effector and memory populations T1D T1D_6 chip0423_110590 PBMC +7399 CAARPRPGKLIF TRAV13-1*01 TRAJ34*01 CASSPGTGNTEAFF TRBV3-1*01 TRBJ1-1*01 HLA-B*08:01 B2M MHCI EVKEKGMAA GAD2 HomoSapiens PMID:34811538 tetramer-sort yes amplicon-seq Naive T cells T1D T1D_5 chip0423_14617 PBMC +7400 CSAGRDGTNEKLFF TRBV29-1*01 TRBJ1-4*01 HLA-A*02:01 B2M MHCI GLCTLVAML BLMF1 EBV PMID:34811538 tetramer-sort yes amplicon-seq effector memory T cells T1D T1D_6 chip0423_823099 PBMC +7401 CILPLAGGPGYGKLTF TRAV26-2*01 TRAJ52*01 CASSLGQAYEQYF TRBV7-8*01 TRBJ2-7*01 HLA-B*08:01 B2M MHCI FLRGRAYGL EBNA3A EBV PMID:34811538 tetramer-sort yes amplicon-seq effector memory T cells T1D T1D_6 chip0423_699814 PBMC +7402 CILPLAGGTSYKKLTF TRAV26-2*01 TRAJ52*01 CASSQGQAYEQYF TRBV7-8*01 TRBJ2-7*01 HLA-B*08:01 B2M MHCI FLRGRAYGL EBNA3A EBV PMID:34811538 tetramer-sort yes amplicon-seq effector memory T cells T1D T1D_4 chip0423_863075 PBMC +7403 CASSSLSGGAGNEQFF TRBV7-9*01 TRBJ2-1*01 HLA-B*08:01 B2M MHCI RAKFKQLL BZLF1 EBV PMID:34811538 tetramer-sort yes amplicon-seq effector memory T cells T1D T1D_5 chip0423_455602 PBMC +7404 CARSSGPAYAQYV TRBV7-8*01 TRBJ2-7*01 HLA-B*08:01 B2M MHCI FLRGRAYGL EBNA3A EBV PMID:34811538 tetramer-sort yes amplicon-seq effector T cells healthy healthy_4 chip0423_412881 PBMC +7405 CALSEPNYGGSQGSLLF TRAV19*01 TRAJ42*01 CASSIQGTTNEQFF TRBV19*01 TRBJ2-1*01 HLA-A*02:01 B2M MHCI VAANIVLTV ZNT8 HomoSapiens PMID:34811538 tetramer-sort yes amplicon-seq Naive T cells T1D T1D_6 chip0423_230397 PBMC +7406 CASSQVNNPGDGYTF TRBV14*01 TRBJ1-2*01 HLA-B*08:01 B2M MHCI QAKWRLQTL EBNA3A EBV PMID:34811538 tetramer-sort yes amplicon-seq effector memory T cells T1D T1D_4 chip0423_12818 PBMC +7407 CASSSLSGGAGNEQFF TRBV7-9*01 TRBJ2-1*01 HLA-B*08:01 B2M MHCI RAKFKQLL BZLF1 EBV PMID:34811538 tetramer-sort yes amplicon-seq effector memory T cells T1D T1D_5 chip0423_665752 PBMC +7408 CAATETSYDKVIF TRAV13-1*01 TRAJ50*01 CSAGGNTEAFF TRBV29-1*01 TRBJ1-1*01 HLA-B*08:01 B2M MHCI RAKFKQLL BZLF1 EBV PMID:34811538 tetramer-sort yes amplicon-seq effector memory T cells T1D T1D_5 chip0423_671025 PBMC +7409 CASSLGQAYEQYF TRBV7-8*01 TRBJ2-7*01 HLA-B*08:01 B2M MHCI FLRGRAYGL EBNA3A EBV PMID:34811538 tetramer-sort yes amplicon-seq effector memory T cells T1D T1D_6 chip0423_764112 PBMC +7410 CAVEGEQAGTALIF TRAV2*01 TRAJ15*01 HLA-A*02:01 B2M MHCI ELAEYLYNI GAD65 HomoSapiens PMID:34811538 tetramer-sort yes amplicon-seq transitional T cells between effector and memory populations T1D T1D_4 chip0423_412199 PBMC +7411 CAAMETSYDKVIF TRAV13-1*01 TRAJ50*01 CASSVQGQGPTTGELFF TRBV9*01 TRBJ2-2*01 HLA-B*08:01 B2M MHCI RAKFKQLL BZLF1 EBV PMID:34811538 tetramer-sort yes amplicon-seq effector memory T cells T1D T1D_5 chip0423_878702 PBMC +7412 CASSPLGTADSGNTIYF TRBV11-1*01 TRBJ1-3*01 HLA-B*08:01 B2M MHCI RAKFKQLL BZLF1 EBV PMID:34811538 tetramer-sort yes amplicon-seq effector memory T cells T1D T1D_5 chip0423_586734 PBMC +7413 CAVTPWEGGYNKLIF TRAV12-2*01 TRAJ4*01 CASSLSGAGEQYF TRBV27*01 TRBJ2-7*01 HLA-A*02:01 B2M MHCI VMNILLQYV GAD65 HomoSapiens PMID:34811538 tetramer-sort yes amplicon-seq Naive T cells T1D T1D_6 chip0423_530968 PBMC +7414 CVIRKAGTALIF TRAV12-1*01 TRAJ15*01 HLA-A*02:01 B2M MHCI LLAGIGTVPI PGT HomoSapiens PMID:34811538 tetramer-sort yes amplicon-seq transitional T cells between effector and memory populations T1D T1D_4 chip0423_153397 PBMC +7415 CASSLTVLAGPNTEAFF TRBV7-3*01 TRBJ1-1*01 HLA-B*08:01 B2M MHCI RAKFKQLL BZLF1 EBV PMID:34811538 tetramer-sort yes amplicon-seq effector memory T cells T1D T1D_4 chip0423_877914 PBMC +7416 CVLRLGGATSYGKLTL TRAV26-2*01 TRAJ52*01 CASRLGPAYEQYF TRBV7-8*01 TRBJ2-7*01 HLA-B*08:01 B2M MHCI FLRGRAYGL EBNA3A EBV PMID:34811538 tetramer-sort yes amplicon-seq effector memory T cells T1D T1D_6 chip0423_456513 PBMC +7417 CIVREGGGADGLTF TRAV26-1*01 TRAJ45*01 HLA-B*08:01 B2M MHCI RAKFKQLL BZLF1 EBV PMID:34811538 tetramer-sort yes amplicon-seq effector memory T cells T1D T1D_4 chip0423_746077 PBMC +7418 CAMTLPNFGNEKLTF TRAV12-3*01 TRAJ48*01 CASSITYPTGLQETQYF TRBV27*01 TRBJ2-5*01 HLA-A*02:01 B2M MHCI LLAGIGTVPI PGT HomoSapiens PMID:34811538 tetramer-sort yes amplicon-seq Naive T cells T1D T1D_6 chip0423_72203 PBMC +7419 CASSLAVGEGPQHF TRBV7-9*01 TRBJ1-5*01 HLA-B*08:01 B2M MHCI RAKFKQLL BZLF1 EBV PMID:34811538 tetramer-sort yes amplicon-seq effector T cells T1D T1D_4 chip0423_112325 PBMC +7420 CASSQVNNPGDGYTF TRBV14*01 TRBJ1-2*01 HLA-B*08:01 B2M MHCI QAKWRLQTL EBNA3A EBV PMID:34811538 tetramer-sort yes amplicon-seq effector memory T cells T1D T1D_4 chip0423_762464 PBMC +7421 CIT*EIct?GGFQTFF TRAV26-1*01 TRAJ9*01 HLA-B*08:01 B2M MHCI WMRLLPLLAL INS HomoSapiens PMID:34811538 tetramer-sort yes amplicon-seq Naive T cells T1D T1D_6 chip0423_532065 PBMC +7423 CASSQTFPNTGELFF TRBV3-1*01 TRBJ2-2*01 HLA-B*08:01 B2M MHCI RAKFKQLL BZLF1 EBV PMID:34811538 tetramer-sort yes amplicon-seq effector memory T cells healthy healthy_4 chip0423_728459 PBMC +7424 CAGGETSYDKVIF TRAV13-1*01 TRAJ50*01 CASSSLGTGDTEAFF TRBV7-9*01 TRBJ1-1*01 HLA-B*08:01 B2M MHCI RAKFKQLL BZLF1 EBV PMID:34811538 tetramer-sort yes amplicon-seq effector memory T cells T1D T1D_5 chip0423_657559 PBMC +7425 CATDGASGYSTLTF TRAV17*01 TRAJ11*01 HLA-A*02:01 B2M MHCI FLYALALLL LMP2 EBV PMID:34811538 tetramer-sort yes amplicon-seq central memory T cells T1D T1D_4 chip0423_439908 PBMC +7426 CAVRPGGFKTIF TRAV20*01 TRAJ9*01 HLA-B*08:01 B2M MHCI YLKDQQLL gp160 HIV-1 PMID:34811538 tetramer-sort yes amplicon-seq Naive T cells T1D T1D_6 chip0423_414131 PBMC +7427 CSFPWPSGVPPSYEQYF TRBV20-1*01 TRBJ2-7*01 HLA-B*08:01 B2M MHCI RAKFKQLL BZLF1 EBV PMID:34811538 tetramer-sort yes amplicon-seq effector memory T cells T1D T1D_5 chip0423_854484 PBMC +7428 CILPLAGGTSYGKLTF TRAV26-2*01 TRAJ52*01 CASSLGQAYEQYF TRBV7-8*01 TRBJ2-7*01 HLA-B*08:01 B2M MHCI FLRGRAYGL EBNA3A EBV PMID:34811538 tetramer-sort yes amplicon-seq effector T cells T1D T1D_6 chip0423_384355 PBMC +7429 CASQGGSQGNLIF TRAV20*01 TRAJ42*01 HLA-A*02:01 B2M MHCI TLLANVTAV VP6 RotavirusA PMID:34811538 tetramer-sort yes amplicon-seq transitional T cells between effector and memory populations T1D T1D_6 chip0423_373907 PBMC +7430 CASSLTGPIPSTDTQYF TRBV27*01 TRBJ2-3*01 HLA-B*08:01 B2M MHCI QAKWRLQTL EBNA3A EBV PMID:34811538 tetramer-sort yes amplicon-seq effector memory T cells T1D T1D_4 chip0423_749227 PBMC +7431 CAAKETSYDKVIF TRAV13-1*01 TRAJ50*01 CASSLLGRSNTEAFF TRBV7-9*01 TRBJ1-1*01 HLA-B*08:01 B2M MHCI RAKFKQLL BZLF1 EBV PMID:34811538 tetramer-sort yes amplicon-seq effector memory T cells T1D T1D_5 chip0423_736191 PBMC +7432 CASSADSDYGYTF TRBV9*01 TRBJ1-2*01 HLA-A*02:01 B2M MHCI YLLEMLWRL LMP1 EBV PMID:34811538 tetramer-sort yes amplicon-seq effector memory T cells T1D T1D_4 chip0423_278945 PBMC +7434 CASSWGIMGEQYF TRBV5-1*01 TRBJ2-7*01 HLA-A*02:01 B2M MHCI LLAGIGTVPI PGT HomoSapiens PMID:34811538 tetramer-sort yes amplicon-seq Naive T cells T1D T1D_6 chip0423_261998 PBMC +7435 CIVREGGGADGLPF TRAV26-1*01 TRAJ45*01 CASSLAVGEGPQHF TRBV7-9*01 TRBJ1-5*01 HLA-B*08:01 B2M MHCI RAKFKQLL BZLF1 EBV PMID:34811538 tetramer-sort yes amplicon-seq effector T cells T1D T1D_4 chip0423_876784 PBMC +7437 CALTTYGQNFVF TRAV38-1*01 TRAJ26*01 CSASRDSYEQYF TRBV20-1*01 TRBJ2-7*01 HLA-A*02:01 B2M MHCI YLLEMLWRL LMP1 EBV PMID:34811538 tetramer-sort yes amplicon-seq central memory T cells T1D T1D_4 chip0423_349306 PBMC +7438 CAMSQSNFGNEKLTF TRAV12-3*01 TRAJ48*01 CSAYRGSNTGELFF TRBV20-1*01 TRBJ2-2*01 HLA-A*02:01 B2M MHCI LLAGIGTVPI PGT HomoSapiens PMID:34811538 tetramer-sort yes amplicon-seq Naive T cells T1D T1D_6 chip0423_704400 PBMC +7439 CASSADSDYGYTF TRBV9*01 TRBJ1-2*01 HLA-A*02:01 B2M MHCI YLLEMLWRL LMP1 EBV PMID:34811538 tetramer-sort yes amplicon-seq central memory T cells T1D T1D_4 chip0423_827193 PBMC +7440 CASSALGGDNTEAFF TRAV36/DV7*01 TRAJ40*01 CASSALGGDNTEAFF TRBV7-9*01 TRBJ1-1*01 HLA-B*08:01 B2M MHCI RAKFKQLL BZLF1 EBV PMID:34811538 tetramer-sort yes amplicon-seq effector memory T cells T1D T1D_5 chip0423_108233 PBMC +7441 CAALETSYDKVIF TRAV13-1*01 TRAJ50*01 CASSPPGANEKLFF TRBV5-4*01 TRBJ1-4*01 HLA-B*08:01 B2M MHCI RAKFKQLL BZLF1 EBV PMID:34811538 tetramer-sort yes amplicon-seq effector memory T cells T1D T1D_5 chip0423_814985 PBMC +7442 CAFTGGFKTIF TRAV17*01 TRAJ9*01 CASSPPNGRAEQYF TRBV5-6*01 TRBJ2-7*01 HLA-A*02:01 B2M MHCI GILGFVFTL M1 InfluenzaA PMID:34811538 tetramer-sort yes amplicon-seq central memory T cells healthy healthy_4 chip0423_82034 PBMC +7443 CASSLGQAYEQYF TRBV7-8*01 TRBJ2-7*01 HLA-B*08:01 B2M MHCI FLRGRAYGL EBNA3A EBV PMID:34811538 tetramer-sort yes amplicon-seq effector memory T cells T1D T1D_6 chip0423_596730 PBMC +7444 CASSLGQAYEQYF TRBV7-8*01 TRBJ2-7*01 HLA-B*08:01 B2M MHCI FLRGRAYGL EBNA3A EBV PMID:34811538 tetramer-sort yes amplicon-seq transitional T cells between effector and memory populations T1D T1D_6 chip0423_751065 PBMC +7445 CASKVGQGGTGTQYF TRBV11-2*01 TRBJ2-5*01 HLA-A*01:01 B2M MHCI HSNLNDATY NP InfluenzaA PMID:34811538 tetramer-sort yes amplicon-seq Naive T cells T1D T1D_6 chip0423_204737 PBMC +7446 CASSSGPGEYNEQFF TRBV4-1*01 TRBJ2-1*01 HLA-B*08:01 B2M MHCI RAKFKQLL BZLF1 EBV PMID:34811538 tetramer-sort yes amplicon-seq Naive T cells T1D T1D_6 chip0423_552843 PBMC +7447 CAMNGDYKLSF TRAV12-3*01 TRAJ20*01 CASTQETGANVLTF TRBV7-9*01 TRBJ2-6*01 HLA-A*02:01 B2M MHCI LLSILCIWV ZNT8 HomoSapiens PMID:34811538 tetramer-sort yes amplicon-seq Naive T cells T1D T1D_4 chip0423_64464 PBMC +7448 CASSVSGAPYEQYF TRBV9*01 TRBJ2-7*01 HLA-B*08:01 B2M MHCI FLRGRAYGL EBNA3A EBV PMID:34811538 tetramer-sort yes amplicon-seq effector memory T cells T1D T1D_6 chip0423_3706 PBMC +7449 CASQLAGGTGELFF TRBV24-1*01 TRBJ2-2*01 HLA-B*08:01 B2M MHCI RAKFKQLL BZLF1 EBV PMID:34811538 tetramer-sort yes amplicon-seq effector memory T cells T1D T1D_5 chip0423_740507 PBMC +7450 CASSADSDYGYTF TRBV9*01 TRBJ1-2*01 HLA-A*02:01 B2M MHCI YLLEMLWRL LMP1 EBV PMID:34811538 tetramer-sort yes amplicon-seq effector memory T cells T1D T1D_4 chip0423_788800 PBMC +7451 CIVREGGGADGLTF TRAV26-1*01 TRAJ45*01 CASSLAVGEGPQHF TRBV7-9*01 TRBJ1-5*01 HLA-B*08:01 B2M MHCI RAKFKQLL BZLF1 EBV PMID:34811538 tetramer-sort yes amplicon-seq effector T cells T1D T1D_4 chip0423_757781 PBMC +7452 CAVKVWag??atGL*LLF TRAV8-4*01 TRAJ16*01 CASSDIREGQGEAFF TRBV10-2*01 TRBJ1-1*01 HLA-B*08:01 B2M MHCI QAKWRLQTL EBNA3A EBV PMID:34811538 tetramer-sort yes amplicon-seq central memory T cells T1D T1D_6 chip0423_716546 PBMC +7453 CASSDIREGQGEAFF TRBV10-2*01 TRBJ1-1*01 HLA-B*08:01 B2M MHCI QAKWRLQTL EBNA3A EBV PMID:34811538 tetramer-sort yes amplicon-seq central memory T cells T1D T1D_6 chip0423_637924 PBMC +7454 CAVEDSGTYKYIF TRAV39*01 TRAJ40*01 CSAISLGRSNTGELFF TRBV20-1*01 TRBJ2-2*01 HLA-A*02:01 B2M MHCI IQATVMIIV ZNT8 HomoSapiens PMID:34811538 tetramer-sort yes amplicon-seq Naive T cells healthy healthy_4 chip0423_705113 PBMC +7455 CSAGRDGTNEKLFF TRBV29-1*01 TRBJ1-4*01 HLA-A*02:01 B2M MHCI GLCTLVAML BLMF1 EBV PMID:34811538 tetramer-sort yes amplicon-seq effector memory T cells T1D T1D_6 chip0423_630751 PBMC +7457 CAGFPWAAGHTLPF TRAV25*01 TRAJ17*01 HLA-A*01:01 B2M MHCI CTELKLSDY NP InfluenzaA PMID:34811538 tetramer-sort yes amplicon-seq transitional T cells between effector and memory populations T1D T1D_5 chip0423_867590 PBMC +7458 CAVMMEYGNKLVF TRAV12-2*01 TRAJ47*01 CASSQLPTGYFSEQYF TRBV4-1*01 TRBJ2-7*01 HLA-B*08:01 B2M MHCI RAKFKQLL BZLF1 EBV PMID:34811538 tetramer-sort yes amplicon-seq effector memory T cells T1D T1D_5 chip0423_318597 PBMC +7459 CAVRDTTWAAKIIF TRAV3*01 TRAJ30*01 HLA-B*08:01 B2M MHCI FLRGRAYGL EBNA3A EBV PMID:34811538 tetramer-sort yes amplicon-seq effector memory T cells T1D T1D_4 chip0423_765983 PBMC +7460 CASSQVNNPGDGYTF TRBV14*01 TRBJ1-2*01 HLA-B*08:01 B2M MHCI QAKWRLQTL EBNA3A EBV PMID:34811538 tetramer-sort yes amplicon-seq effector memory T cells T1D T1D_4 chip0423_534274 PBMC +7461 CASSLGQAYEQYF TRBV7-8*01 TRBJ2-7*01 HLA-B*08:01 B2M MHCI FLRGRAYGL EBNA3A EBV PMID:34811538 tetramer-sort yes amplicon-seq effector memory T cells T1D T1D_6 chip0423_465081 PBMC +7462 CILPLAGGTSYGKLTF TRAV26-2*01 TRAJ52*01 CASSLGQAYEQYF TRBV7-8*01 TRBJ2-7*01 HLA-B*08:01 B2M MHCI FLRGRAYGL EBNA3A EBV PMID:34811538 tetramer-sort yes amplicon-seq effector memory T cells T1D T1D_6 chip0423_371424 PBMC +7463 CASSEMWGAPLHF TRBV2*01 TRBJ1-6*01 HLA-A*01:01 B2M MHCI CTELKLSDY NP InfluenzaA PMID:34811538 tetramer-sort yes amplicon-seq transitional T cells between effector and memory populations healthy healthy_3 chip0423_304587 PBMC +7464 CAAGGGGADGLTF TRAV13-1*01 TRAJ45*01 HLA-B*08:01 B2M MHCI RAKFKQLL BZLF1 EBV PMID:34811538 tetramer-sort yes amplicon-seq transitional T cells between effector and memory populations T1D T1D_4 chip0423_76674 PBMC +7465 CAVSDSEATSGTYKYIF TRAV8-4*01 TRAJ40*01 CASSPGRSSENTIYF TRBV5-4*01 TRBJ1-3*01 HLA-A*02:01 B2M MHCI LLPPLLEHL PTPRN HomoSapiens PMID:34811538 tetramer-sort yes amplicon-seq Naive T cells T1D T1D_4 chip0423_324359 PBMC +7466 CASSLGPGVALEYF TRBV6-1*01 TRBJ2-7*01 HLA-A*02:01 B2M MHCI GILGFVFTL M1 InfluenzaA PMID:34811538 tetramer-sort yes amplicon-seq Naive T cells T1D T1D_4 chip0423_841272 PBMC +7467 CASSLTVLAGPNTEAFF TRBV7-3*01 TRBJ1-1*01 HLA-B*08:01 B2M MHCI RAKFKQLL BZLF1 EBV PMID:34811538 tetramer-sort yes amplicon-seq effector memory T cells T1D T1D_4 chip0423_645664 PBMC +7469 CATGGGSGDSTLTF TRAV17*01 TRAJ11*01 CPSRLAVGEGPQHF TRBV7-9*01 TRBJ1-5*01 HLA-B*08:01 B2M MHCI RAKFKQLL BZLF1 EBV PMID:34811538 tetramer-sort yes amplicon-seq effector memory T cells T1D T1D_4 chip0423_265595 PBMC +7470 CASSLAVGEGPQHF TRBV7-9*01 TRBJ1-5*01 HLA-B*08:01 B2M MHCI RAKFKQLL BZLF1 EBV PMID:34811538 tetramer-sort yes amplicon-seq effector T cells T1D T1D_4 chip0423_244570 PBMC +7473 CAVSDGEGAQKLVF TRAV8-6*01 TRAJ54*01 CASSLTVLAGPNTEAFF TRBV7-3*01 TRBJ1-1*01 HLA-B*08:01 B2M MHCI RAKFKQLL BZLF1 EBV PMID:34811538 tetramer-sort yes amplicon-seq effector memory T cells T1D T1D_4 chip0423_362208 PBMC +7474 CILPLAGGTSYGKLTF TRAV26-2*01 TRAJ52*01 CASSLGQAYEQYF TRBV7-8*01 TRBJ2-7*01 HLA-B*08:01 B2M MHCI FLRGRAYGL EBNA3A EBV PMID:34811538 tetramer-sort yes amplicon-seq effector memory T cells T1D T1D_6 chip0423_304956 PBMC +7475 CALEGGADGLTF TRAV9-2*01 TRAJ45*01 CASSHGQLMNTEAFF TRBV4-3*01 TRBJ1-1*01 HLA-A*02:01 B2M MHCI ALGIGILTV MART1 HomoSapiens PMID:34811538 tetramer-sort yes amplicon-seq Naive T cells T1D T1D_6 chip0423_278569 PBMC +7476 YAPSKIEgt?GAADALTF TRAV23/DV6*01 TRAJ45*01 CASSLGQAYEQYF TRBV7-8*01 TRBJ2-7*01 HLA-B*08:01 B2M MHCI FLRGRAYGL EBNA3A EBV PMID:34811538 tetramer-sort yes amplicon-seq effector memory T cells T1D T1D_6 chip0423_861979 PBMC +7478 CAASETSYDKVIF TRAV13-1*01 TRAJ50*01 HLA-B*08:01 B2M MHCI RAKFKQLL BZLF1 EBV PMID:34811538 tetramer-sort yes amplicon-seq effector memory T cells T1D T1D_5 chip0423_221624 PBMC +7479 CAALDSNSGYALNF TRAV25*01 TRAJ41*01 CASSDSGSGANVLTF TRBV12-3*01,TRBV12-4*01 TRBJ2-6*01 HLA-A*01:01 B2M MHCI QQDKHYDLSY GAD2 HomoSapiens PMID:34811538 tetramer-sort yes amplicon-seq Naive T cells T1D T1D_6 chip0423_211115 PBMC +7480 CAAGETSYDKVIF TRAV13-1*01 TRAJ50*01 CAKPDGGEDTEAFF TRBV6-8*01 TRBJ1-1*01 HLA-B*08:01 B2M MHCI RAKFKQLL BZLF1 EBV PMID:34811538 tetramer-sort yes amplicon-seq effector memory T cells T1D T1D_5 chip0423_59282 PBMC +7482 CAGAWGSSNTGKLIF TRAV27*01 TRAJ37*01 CASSIRSAYEQYF TRBV19*01 TRBJ2-7*01 HLA-A*02:01 B2M MHCI GILGFVFTL M1 InfluenzaA PMID:34811538 tetramer-sort yes amplicon-seq transitional T cells between effector and memory populations healthy healthy_3 chip0423_781947 PBMC +7483 CASGPDISYSYEQYF TRBV12-5*01 TRBJ2-7*01 HLA-B*08:01 B2M MHCI RAKFKQLL BZLF1 EBV PMID:34811538 tetramer-sort yes amplicon-seq effector T cells T1D T1D_5 chip0423_522500 PBMC +7485 CGTETDNNAGNMLTF TRAV30*01 TRAJ39*01 CASSIYSINEQFF TRBV19*01 TRBJ2-1*01 HLA-A*02:01 B2M MHCI GILGFVFTL M1 InfluenzaA PMID:34811538 tetramer-sort yes amplicon-seq transitional T cells between effector and memory populations T1D T1D_6 chip0423_614039 PBMC +7486 CIVREGGGAVGLPF TRAV26-1*01 TRAJ45*01 CASSLAVGEGPQHF TRBV7-9*01 TRBJ1-5*01 HLA-B*08:01 B2M MHCI RAKFKQLL BZLF1 EBV PMID:34811538 tetramer-sort yes amplicon-seq effector T cells T1D T1D_4 chip0423_197384 PBMC +7487 CATSEGGRGTGELFF TRBV24-1*01 TRBJ2-2*01 HLA-B*08:01 B2M MHCI RAKFKQLL BZLF1 EBV PMID:34811538 tetramer-sort yes amplicon-seq effector memory T cells T1D T1D_5 chip0423_73689 PBMC +7488 CVVRAWat?SNYQLIW TRAV10*01 TRAJ33*01 CASSPPGRNEKLFF TRBV12-3*01,TRBV12-4*01 TRBJ1-4*01 HLA-B*08:01 B2M MHCI RAKFKQLL BZLF1 EBV PMID:34811538 tetramer-sort yes amplicon-seq effector memory T cells T1D T1D_5 chip0423_67016 PBMC +7489 CASSPLLATQGYEQYF TRBV19*01 TRBJ2-7*01 HLA-A*01:01 B2M MHCI CTELKLSDY NP InfluenzaA PMID:34811538 tetramer-sort yes amplicon-seq transitional T cells between effector and memory populations healthy healthy_3 chip0423_228108 PBMC +7490 CAVSTRF TRAV8-1*01 TRAJ43*01 CASSTGTSNNEQFF TRBV6-2*01,TRBV6-3*01 TRBJ2-1*01 HLA-A*02:01 B2M MHCI YVLDHLIVV BRLF1 EBV PMID:34811538 tetramer-sort yes amplicon-seq effector memory T cells T1D T1D_4 chip0423_94655 PBMC +7492 CVVKK*SGAGSYHLPF TRAV12-1*01 TRAJ28*01 CASASPPFF TRBV19*01 TRBJ1-1*01 HLA-A*01:01 B2M MHCI STANTNMFTY GAD2 HomoSapiens PMID:34811538 tetramer-sort yes amplicon-seq Naive T cells T1D T1D_5 chip0423_829964 PBMC +7493 CAASETSYDKVIF TRAV13-1*01 TRAJ50*01 CASSSTGGGDQPQHF TRBV7-9*01 TRBJ1-5*01 HLA-B*08:01 B2M MHCI RAKFKQLL BZLF1 EBV PMID:34811538 tetramer-sort yes amplicon-seq effector memory T cells T1D T1D_4 chip0423_435658 PBMC +7494 CAAQAVG??cTCSPFYF TRAV20*01 TRAJ49*01 HLA-A*01:01 B2M MHCI CTELKLSDY NP InfluenzaA PMID:34811538 tetramer-sort yes amplicon-seq transitional T cells between effector and memory populations healthy healthy_3 chip0423_39027 PBMC +7495 CAMSSGGGGYQKVTF TRAV12-3*01 TRAJ13*01 CASSLDRWGTGELFF TRBV11-2*01 TRBJ2-2*01 HLA-A*02:01 B2M MHCI LLAGIGTVPI PGT HomoSapiens PMID:34811538 tetramer-sort yes amplicon-seq Naive T cells T1D T1D_6 chip0423_529270 PBMC +7496 CVVNIGGGSQGNLIF TRAV12-1*01 TRAJ42*01 HLA-A*02:01 B2M MHCI GILGFVFTL M1 InfluenzaA PMID:34811538 tetramer-sort yes amplicon-seq transitional T cells between effector and memory populations T1D T1D_4 chip0423_526354 PBMC +7497 CAVRDTTWADKIIF TRAV3*01 TRAJ30*01 CASSLGGGEGASEQFF TRBV7-6*01 TRBJ2-1*01 HLA-B*08:01 B2M MHCI FLRGRAYGL EBNA3A EBV PMID:34811538 tetramer-sort yes amplicon-seq effector memory T cells T1D T1D_4 chip0423_694878 PBMC +7498 CAAAETSYDKVIF TRAV13-1*01 TRAJ50*01 HLA-B*08:01 B2M MHCI RAKFKQLL BZLF1 EBV PMID:34811538 tetramer-sort yes amplicon-seq effector memory T cells T1D T1D_5 chip0423_122030 PBMC +7499 CASSLAVGEGPQHF TRBV7-9*01 TRBJ1-5*01 HLA-B*08:01 B2M MHCI RAKFKQLL BZLF1 EBV PMID:34811538 tetramer-sort yes amplicon-seq effector memory T cells T1D T1D_4 chip0423_448115 PBMC +7500 CIVREGGGADGLTF TRAV26-1*01 TRAJ45*01 CASSLAVGEGPQHF TRBV7-9*01 TRBJ1-5*01 HLA-B*08:01 B2M MHCI RAKFKQLL BZLF1 EBV PMID:34811538 tetramer-sort yes amplicon-seq effector memory T cells T1D T1D_4 chip0423_165361 PBMC +7501 CVVTPSNFGNEKLTF TRAV12-1*01 TRAJ48*01 CASSPTGSSYNEQFF TRBV2*01 TRBJ2-1*01 HLA-A*02:01 B2M MHCI LLAGIGTVPI PGT HomoSapiens PMID:34811538 tetramer-sort yes amplicon-seq Naive T cells T1D T1D_6 chip0423_49310 PBMC +7502 CASSLAVGEGPQHF TRBV7-9*01 TRBJ1-5*01 HLA-B*08:01 B2M MHCI RAKFKQLL BZLF1 EBV PMID:34811538 tetramer-sort yes amplicon-seq effector T cells T1D T1D_4 chip0423_832471 PBMC +7503 CAVSDGEGAQKLVF TRAV8-6*01 TRAJ54*01 CASSLTVLAGPNTEAFF TRBV7-3*01 TRBJ1-1*01 HLA-B*08:01 B2M MHCI RAKFKQLL BZLF1 EBV PMID:34811538 tetramer-sort yes amplicon-seq effector memory T cells T1D T1D_4 chip0423_655121 PBMC +7504 CASSLTDPSTDTQYF TRBV28*01 TRBJ2-3*01 HLA-A*02:01 B2M MHCI LLAGIGTVPI PGT HomoSapiens PMID:34811538 tetramer-sort yes amplicon-seq Naive T cells T1D T1D_6 chip0423_626229 PBMC +7505 CAVHYSGAGSYQLTF TRAV8-1*01 TRAJ28*01 CASSLGSRGGNEQFF TRBV13*01 TRBJ2-1*01 HLA-A*02:01 B2M MHCI LAVDGVLSV ZNT8 HomoSapiens PMID:34811538 tetramer-sort yes amplicon-seq Naive T cells healthy healthy_3 chip0423_865254 PBMC +7506 CASSQKQELEAFF TRBV4-3*01 TRBJ1-1*01 HLA-A*02:01 B2M MHCI LLSLFSLWL ZNT8 HomoSapiens PMID:34811538 tetramer-sort yes amplicon-seq Naive T cells T1D T1D_6 chip0423_802077 PBMC +7507 CAASETSYDKVIF TRAV13-1*01 TRAJ50*01 CASSDLTGNTIYF TRBV7-9*01 TRBJ1-3*01 HLA-B*08:01 B2M MHCI RAKFKQLL BZLF1 EBV PMID:34811538 tetramer-sort yes amplicon-seq effector memory T cells T1D T1D_5 chip0423_728296 PBMC +7509 CAVNPGTYKYIF TRAV20*01 TRAJ40*01 HLA-B*08:01 B2M MHCI ILKLQVFL IAPP HomoSapiens PMID:34811538 tetramer-sort yes amplicon-seq Naive T cells T1D T1D_5 chip0423_225174 PBMC +7510 CASNTGKLIF TRAV1-2*01 TRAJ37*01 CASSVALVQSDTQYF TRBV9*01 TRBJ2-3*01 HLA-B*08:01 B2M MHCI YAKWKLCSA ZNT8 HomoSapiens PMID:34811538 tetramer-sort yes amplicon-seq Naive T cells T1D T1D_6 chip0423_814307 PBMC +7511 CAVEDQGRSYNTDKLIF TRAV2*01 TRAJ34*01 CASSFPVGEGAGNTIYF TRBV7-6*01 TRBJ1-3*01 HLA-B*08:01 B2M MHCI RAKFKQLL BZLF1 EBV PMID:34811538 tetramer-sort yes amplicon-seq effector memory T cells healthy healthy_4 chip0423_785749 PBMC +7512 CALTTYGQNFVF TRAV38-1*01 TRAJ26*01 CSASRDSYEQYF TRBV20-1*01 TRBJ2-7*01 HLA-A*02:01 B2M MHCI YLLEMLWRL LMP1 EBV PMID:34811538 tetramer-sort yes amplicon-seq central memory T cells T1D T1D_4 chip0423_305789 PBMC +7513 CAAAETSYDKVIF TRAV13-1*01 TRAJ50*01 CASSFDYQVFF TRBV5-8*01 TRBJ2-1*01 HLA-A*01:01 B2M MHCI CTELKLSDY NP InfluenzaA PMID:34811538 tetramer-sort yes amplicon-seq Naive T cells healthy healthy_3 chip0423_846078 PBMC +7514 CASSQVSEGASSYNEQFF TRBV4-2*01 TRBJ2-1*01 HLA-A*02:01 B2M MHCI LLAGIGTVPI PGT HomoSapiens PMID:34811538 tetramer-sort yes amplicon-seq Naive T cells T1D T1D_4 chip0423_553352 PBMC +7515 CAVNSGNTPLVF TRAV1-2*01 TRAJ29*01 CASSQVNNPGDGYTF TRBV14*01 TRBJ1-2*01 HLA-B*08:01 B2M MHCI QAKWRLQTL EBNA3A EBV PMID:34811538 tetramer-sort yes amplicon-seq effector memory T cells T1D T1D_4 chip0423_858915 PBMC +7516 CASSLAVGEGPQHF TRBV7-9*01 TRBJ1-5*01 HLA-B*08:01 B2M MHCI RAKFKQLL BZLF1 EBV PMID:34811538 tetramer-sort yes amplicon-seq effector memory T cells T1D T1D_4 chip0423_615677 PBMC +7517 CASSALGGVDNEQFF TRBV7-9*01 TRBJ2-1*01 HLA-B*08:01 B2M MHCI RAKFKQLL BZLF1 EBV PMID:34811538 tetramer-sort yes amplicon-seq central memory T cells T1D T1D_5 chip0423_843985 PBMC +7518 CIVRETNNDMRF TRAV26-1*01 TRAJ43*01 CASSQTGSLNTEAFF TRBV4-1*01 TRBJ1-1*01 HLA-B*08:01 B2M MHCI RAKFKQLL BZLF1 EBV PMID:34811538 tetramer-sort yes amplicon-seq effector memory T cells healthy healthy_4 chip0423_111134 PBMC +7519 CAMSLSNFGLECLSF TRAV12-3*01 TRAJ48*01 CASSETT??gDIHEQYF TRBV25-1*01 TRBJ2-7*01 HLA-A*02:01 B2M MHCI LLAGIGTVPI PGT HomoSapiens PMID:34811538 tetramer-sort yes amplicon-seq Naive T cells T1D T1D_6 chip0423_83602 PBMC +7520 CAAAETSYDKVIF TRAV13-1*01 TRAJ50*01 CASQLAGGTGELFF TRBV24-1*01 TRBJ2-2*01 HLA-B*08:01 B2M MHCI RAKFKQLL BZLF1 EBV PMID:34811538 tetramer-sort yes amplicon-seq effector T cells T1D T1D_5 chip0423_833597 PBMC +7521 CAAAETSYDKVIF TRAV13-1*01 TRAJ50*01 CASQLAGGTGELFF TRBV24-1*01 TRBJ2-2*01 HLA-B*08:01 B2M MHCI RAKFKQLL BZLF1 EBV PMID:34811538 tetramer-sort yes amplicon-seq effector memory T cells T1D T1D_5 chip0423_563821 PBMC +7522 CAASGGNDMRF TRAV29/DV5*01 TRAJ43*01 CASSFSSGPYNEQFF TRBV7-9*01 TRBJ2-1*01 HLA-B*08:01 B2M MHCI YAKWKLCSA ZNT8 HomoSapiens PMID:34811538 tetramer-sort yes amplicon-seq Naive T cells T1D T1D_5 chip0423_559002 PBMC +7523 FASSFLGQRRSPLHF TRAV36/DV7*01 TRAJ11*01 CASSFLGQGRSPLHF TRBV7-9*01 TRBJ1-6*01 HLA-B*08:01 B2M MHCI RAKFKQLL BZLF1 EBV PMID:34811538 tetramer-sort yes amplicon-seq effector memory T cells T1D T1D_5 chip0423_171914 PBMC +7525 CILPLAGGTSYGKLTF TRAV26-2*01 TRAJ52*01 CASSLGQAYEQYF TRBV7-8*01 TRBJ2-7*01 HLA-B*08:01 B2M MHCI FLRGRAYGL EBNA3A EBV PMID:34811538 tetramer-sort yes amplicon-seq effector T cells T1D T1D_6 chip0423_66014 PBMC +7527 CAGPMALg?cNTGKLIF TRAV25*01 TRAJ37*01 CASSLSFPTEAFF TRBV27*01 TRBJ1-1*01 HLA-A*01:01 B2M MHCI LTSLTILQLY G6PC2 HomoSapiens PMID:34811538 tetramer-sort yes amplicon-seq Naive T cells T1D T1D_5 chip0423_50634 PBMC +7528 CSAKETLYAGGDTF TRBV20-1*01 TRBJ1-2*01 HLA-A*02:01 B2M MHCI LLAGIGTVPI PGT HomoSapiens PMID:34811538 tetramer-sort yes amplicon-seq Naive T cells T1D T1D_4 chip0423_715501 PBMC +7529 CASSATVSSYEQYF TRBV9*01 TRBJ2-7*01 HLA-B*08:01 B2M MHCI EVKEKGMAAL GAD2 HomoSapiens PMID:34811538 tetramer-sort yes amplicon-seq Naive T cells T1D T1D_5 chip0423_342176 PBMC +7531 CAVDTGNQFYF TRAV12-1*01,TRAV21*01 TRAJ49*01 HLA-A*01:01 B2M MHCI VSATAGTTVY GAD2 HomoSapiens PMID:34811538 tetramer-sort yes amplicon-seq Naive T cells T1D T1D_5 chip0423_553158 PBMC +7532 CAMREGEGGGFKTIF TRAV14/DV4*01 TRAJ9*01 CASSSGLAGGSHTGELFF TRBV11-1*01 TRBJ2-2*01 HLA-B*08:01 B2M MHCI RAKFKQLL BZLF1 EBV PMID:34811538 tetramer-sort yes amplicon-seq effector T cells T1D T1D_5 chip0423_228407 PBMC +7533 CIVRETSYDKVIF TRAV26-1*01 TRAJ50*01 CASSQPGRANEQFF TRBV6-1*01 TRBJ2-1*01 HLA-B*08:01 B2M MHCI RAKFKQLL BZLF1 EBV PMID:34811538 tetramer-sort yes amplicon-seq effector memory T cells T1D T1D_5 chip0423_486300 PBMC +7534 CAASETSYDKVIF TRAV13-1*01 TRAJ50*01 CASSLLGSSGNTIYF TRBV7-9*01 TRBJ1-3*01 HLA-B*08:01 B2M MHCI RAKFKQLL BZLF1 EBV PMID:34811538 tetramer-sort yes amplicon-seq effector memory T cells T1D T1D_5 chip0423_135873 PBMC +7536 CILPLAGGTSYGKLTF TRAV26-2*01 TRAJ52*01 CASSLGQAYEQYF TRBV7-8*01 TRBJ2-7*01 HLA-B*08:01 B2M MHCI FLRGRAYGL EBNA3A EBV PMID:34811538 tetramer-sort yes amplicon-seq effector memory T cells T1D T1D_6 chip0423_523582 PBMC +7537 CILPLAARTSSVQLTS TRAV26-2*01 TRAJ52*01 CASSLGQAYEQYF TRBV7-8*01 TRBJ2-7*01 HLA-B*08:01 B2M MHCI FLRGRAYGL EBNA3A EBV PMID:34811538 tetramer-sort yes amplicon-seq effector memory T cells T1D T1D_4 chip0423_508595 PBMC +7538 CAVG*ca??atARLMF TRAV12-2*01 TRAJ31*01 CASSYQEGTRSYNEQFF TRBV5-6*01 TRBJ2-1*01 HLA-A*02:01 B2M MHCI LLAGIGTVPI PGT HomoSapiens PMID:34811538 tetramer-sort yes amplicon-seq Naive T cells healthy healthy_3 chip0423_786789 PBMC +7539 CATGGSGNTIYF TRBV7-9*01 TRBJ1-3*01 HLA-A*02:01 B2M MHCI KMYAFTLES ZNT8 HomoSapiens PMID:34811538 tetramer-sort yes amplicon-seq Naive T cells T1D T1D_6 chip0423_527950 PBMC +7540 CASSLGQAYEQYF TRBV7-8*01 TRBJ2-7*01 HLA-B*08:01 B2M MHCI FLRGRAYGL EBNA3A EBV PMID:34811538 tetramer-sort yes amplicon-seq effector T cells T1D T1D_6 chip0423_340023 PBMC +7541 CASSGQGNQPQHF TRBV6-2*01,TRBV6-3*01 TRBJ1-5*01 HLA-A*02:01 B2M MHCI RLLPLLALL PREINS HomoSapiens PMID:34811538 tetramer-sort yes amplicon-seq Naive T cells T1D T1D_6 chip0423_733665 PBMC +7542 CGPDFGNENLTF TRAV30*01 TRAJ48*01 HLA-A*02:01 B2M MHCI ALGIGILTV MART1 HomoSapiens PMID:34811538 tetramer-sort yes amplicon-seq Naive T cells T1D T1D_6 chip0423_276605 PBMC +7543 CASSLVVSHGELFF TRBV7-2*01 TRBJ2-2*01 HLA-B*08:01 B2M MHCI RAKFKQLL BZLF1 EBV PMID:34811538 tetramer-sort yes amplicon-seq effector memory T cells T1D T1D_4 chip0423_152045 PBMC +7544 CAGHRTc?cGNPFYF TRAV35*01 TRAJ49*01 HLA-A*02:01 B2M MHCI LLAGIGTVPI PGT HomoSapiens PMID:34811538 tetramer-sort yes amplicon-seq Naive T cells T1D T1D_4 chip0423_674197 PBMC +7545 RIVREGGGADGLTF TRAV26-1*01 TRAJ45*01 CASSLAVGEGPQHF TRBV7-9*01 TRBJ1-5*01 HLA-B*08:01 B2M MHCI RAKFKQLL BZLF1 EBV PMID:34811538 tetramer-sort yes amplicon-seq effector memory T cells T1D T1D_4 chip0423_383462 PBMC +7546 CASSPDSQETQYF TRBV12-3*01,TRBV12-4*01 TRBJ2-5*01 HLA-A*02:01 B2M MHCI QLARQQVHV GFAP HomoSapiens PMID:34811538 tetramer-sort yes amplicon-seq Naive T cells healthy healthy_4 chip0423_596931 PBMC +7548 CALSEPYGGSQGNLIF TRAV19*01 TRAJ42*01 CASSFRGGAYEQYF TRBV28*01 TRBJ2-7*01 HLA-B*08:01 B2M MHCI YAKWKLCSA ZNT8 HomoSapiens PMID:34811538 tetramer-sort yes amplicon-seq Naive T cells T1D T1D_6 chip0423_428806 PBMC +7549 CASRLFSFGT??gT*SGANVLTF TRBV7-8*01 TRBJ2-6*01 HLA-B*08:01 B2M MHCI RAKFKQLL BZLF1 EBV PMID:34811538 tetramer-sort yes amplicon-seq effector memory T cells healthy healthy_4 chip0423_248262 PBMC +7550 CASSLVRPGDTEAFF TRBV7-9*01 TRBJ1-1*01 HLA-B*08:01 B2M MHCI RAKFKQLL BZLF1 EBV PMID:34811538 tetramer-sort yes amplicon-seq effector memory T cells T1D T1D_4 chip0423_113808 PBMC +7551 CASSQVNNPGDGYTF TRBV14*01 TRBJ1-2*01 HLA-B*08:01 B2M MHCI QAKWRLQTL EBNA3A EBV PMID:34811538 tetramer-sort yes amplicon-seq effector memory T cells T1D T1D_4 chip0423_828071 PBMC +7552 CASRGGEAYNEQFF TRBV7-9*01 TRBJ2-1*01 HLA-A*02:01 B2M MHCI LLAGIGTVPI PGT HomoSapiens PMID:34811538 tetramer-sort yes amplicon-seq Naive T cells T1D T1D_4 chip0423_32629 PBMC +7553 CAAAETSYDKVIF TRAV13-1*01 TRAJ50*01 CASQLAGGTGELFF TRBV24-1*01 TRBJ2-2*01 HLA-B*08:01 B2M MHCI RAKFKQLL BZLF1 EBV PMID:34811538 tetramer-sort yes amplicon-seq effector T cells T1D T1D_5 chip0423_428940 PBMC +7554 CAVSAVgc?LGVKIIF TRAV8-6*01 TRAJ23*01 CASSWANPPQHF TRBV19*01 TRBJ1-5*01 HLA-A*02:01 B2M MHCI GILGFVFTL M1 InfluenzaA PMID:34811538 tetramer-sort yes amplicon-seq Naive T cells T1D T1D_6 chip0423_390794 PBMC +7555 CASLHPPTNTEAFF TRAV9-2*01 TRAJ40*01 CASLHTQTNTEAFF TRBV12-3*01,TRBV12-4*01 TRBJ1-1*01 HLA-B*08:01 B2M MHCI RAKFKQLL BZLF1 EBV PMID:34811538 tetramer-sort yes amplicon-seq effector memory T cells T1D T1D_5 chip0423_389445 PBMC +7556 CAVANHQFYF TRAV12-2*01 TRAJ49*01 CSALGGGRTGELFF TRBV20-1*01 TRBJ2-2*01 HLA-A*02:01 B2M MHCI VMNILLQYV GAD65 HomoSapiens PMID:34811538 tetramer-sort yes amplicon-seq Naive T cells T1D T1D_6 chip0423_837318 PBMC +7557 CAPAAVVQAAGNKLTF TRAV17*01 TRAJ17*01 CASSKQGGGYGYTF TRBV6-1*01 TRBJ1-2*01 HLA-A*02:01 B2M MHCI FLYALALLL LMP2 EBV PMID:34811538 tetramer-sort yes amplicon-seq central memory T cells T1D T1D_4 chip0423_112134 PBMC +7558 CASSLELGLPYEQYF TRBV5-1*01 TRBJ2-7*01 HLA-B*08:01 B2M MHCI QAKWRLQTL EBNA3A EBV PMID:34811538 tetramer-sort yes amplicon-seq transitional T cells between effector and memory populations T1D T1D_4 chip0423_600871 PBMC +7559 CAVE*EFa?gGAQKLVF TRAV36/DV7*01 TRAJ54*01 CASSEMFPGTQYF TRBV6-1*01 TRBJ2-5*01 HLA-B*08:01 B2M MHCI YAKWKLCSA ZNT8 HomoSapiens PMID:34811538 tetramer-sort yes amplicon-seq Naive T cells T1D T1D_4 chip0423_30453 PBMC +7560 CIVREGGGAAGLTF TRAV26-1*01 TRAJ45*01 CASSLAVGEGPQHF TRBV7-9*01 TRBJ1-5*01 HLA-B*08:01 B2M MHCI RAKFKQLL BZLF1 EBV PMID:34811538 tetramer-sort yes amplicon-seq effector memory T cells T1D T1D_4 chip0423_763980 PBMC +7562 CSAGRDGTNEKLFF TRBV29-1*01 TRBJ1-4*01 HLA-A*02:01 B2M MHCI GLCTLVAML BLMF1 EBV PMID:34811538 tetramer-sort yes amplicon-seq effector memory T cells T1D T1D_6 chip0423_449749 PBMC +7563 CAVNEKDNYGQNFVF TRAV8-1*01 TRAJ26*01 CASSPRDRPYEQYF TRBV7-9*01 TRBJ2-7*01 HLA-A*01:01 B2M MHCI GSHLVEALY INS HomoSapiens PMID:34811538 tetramer-sort yes amplicon-seq Naive T cells T1D T1D_6 chip0423_115026 PBMC +7564 CASGPDISYSYEQYF TRBV12-5*01 TRBJ2-7*01 HLA-B*08:01 B2M MHCI RAKFKQLL BZLF1 EBV PMID:34811538 tetramer-sort yes amplicon-seq effector memory T cells T1D T1D_5 chip0423_304923 PBMC +7566 CAAAETSYDKVIF TRAV13-1*01 TRAJ50*01 CASQLAGGTGELFF TRBV24-1*01 TRBJ2-2*01 HLA-B*08:01 B2M MHCI RAKFKQLL BZLF1 EBV PMID:34811538 tetramer-sort yes amplicon-seq effector T cells T1D T1D_5 chip0423_770388 PBMC +7567 CAVGTMAct?SNTGKLIF TRAV8-3*01 TRAJ37*01 HLA-B*08:01 B2M MHCI ELRSRYWAI NP InfluenzaA PMID:34811538 tetramer-sort yes amplicon-seq transitional T cells between effector and memory populations T1D T1D_6 chip0423_396246 PBMC +7568 CAATETSYDKVIF TRAV13-1*01 TRAJ50*01 CASSTGTSADGELFF TRBV12-3*01,TRBV12-4*01 TRBJ2-2*01 HLA-B*08:01 B2M MHCI RAKFKQLL BZLF1 EBV PMID:34811538 tetramer-sort yes amplicon-seq central memory T cells T1D T1D_5 chip0423_105002 PBMC +7570 CASQGGSQGNLIF TRAV20*01 TRAJ42*01 CASSLGGQTETQYF TRBV13*01 TRBJ2-5*01 HLA-A*02:01 B2M MHCI TLLANVTAV VP6 RotavirusA PMID:34811538 tetramer-sort yes amplicon-seq transitional T cells between effector and memory populations T1D T1D_6 chip0423_470762 PBMC +7571 CAAGETSYDKVIF TRAV13-1*01 TRAJ50*01 CASSPLGEGEKLFF TRBV7-9*01 TRBJ1-4*01 HLA-B*08:01 B2M MHCI RAKFKQLL BZLF1 EBV PMID:34811538 tetramer-sort yes amplicon-seq effector memory T cells T1D T1D_5 chip0423_579630 PBMC +7572 CSARDETGNGYTF TRBV20-1*01 TRBJ1-2*01 HLA-A*02:01 B2M MHCI GLCTLVAML BLMF1 EBV PMID:34811538 tetramer-sort yes amplicon-seq effector memory T cells healthy healthy_4 chip0423_177699 PBMC +7573 CGTATEDDYKLSF TRAV30*01 TRAJ20*01 CASSHPSGLTDTQYF TRBV7-9*01 TRBJ2-3*01 HLA-A*02:01 B2M MHCI RGPGRAFVTI GP160 HIV-1 PMID:34811538 tetramer-sort yes amplicon-seq Naive T cells T1D T1D_4 chip0423_763082 PBMC +7574 CAVDTIDRGSTLGRLYF TRAV39*01 TRAJ18*01 HLA-A*02:01 B2M MHCI GILGFVFTL M1 InfluenzaA PMID:34811538 tetramer-sort yes amplicon-seq effector T cells healthy healthy_3 chip0423_466853 PBMC +7575 CPATETSYDKVIF TRAV13-1*01 TRAJ50*01 CASSPLGSNEKLFF TRBV7-9*01 TRBJ1-4*01 HLA-B*08:01 B2M MHCI RAKFKQLL BZLF1 EBV PMID:34811538 tetramer-sort yes amplicon-seq effector memory T cells T1D T1D_5 chip0423_876996 PBMC +7576 CAGLLIQGGSEELVF TRAV25*01 TRAJ57*01 CASSARGLYYEQYF TRBV6-1*01 TRBJ2-7*01 HLA-B*08:01 B2M MHCI YAFLHATDL GAD2 HomoSapiens PMID:34811538 tetramer-sort yes amplicon-seq Naive T cells T1D T1D_5 chip0423_650873 PBMC +7577 CATAGASRYSTLTF TRAV17*01 TRAJ11*01 CASSVSGAPYEQYF TRBV9*01 TRBJ2-7*01 HLA-B*08:01 B2M MHCI FLRGRAYGL EBNA3A EBV PMID:34811538 tetramer-sort yes amplicon-seq effector T cells T1D T1D_6 chip0423_555879 PBMC +7578 CASSLAVGEGPQHF TRBV7-9*01 TRBJ1-5*01 HLA-B*08:01 B2M MHCI RAKFKQLL BZLF1 EBV PMID:34811538 tetramer-sort yes amplicon-seq effector memory T cells T1D T1D_4 chip0423_254952 PBMC +7579 CAVSDGEGAQKLVF TRAV8-6*01 TRAJ54*01 CASSLTVLAGPNTEAFF TRBV7-3*01 TRBJ1-1*01 HLA-B*08:01 B2M MHCI RAKFKQLL BZLF1 EBV PMID:34811538 tetramer-sort yes amplicon-seq effector memory T cells T1D T1D_4 chip0423_675074 PBMC +7580 CASSQTFPNTGELFF TRBV3-1*01 TRBJ2-2*01 HLA-B*08:01 B2M MHCI RAKFKQLL BZLF1 EBV PMID:34811538 tetramer-sort yes amplicon-seq effector memory T cells healthy healthy_4 chip0423_243998 PBMC +7582 CSVGTADGYTF TRBV29-1*01 TRBJ1-2*01 HLA-B*08:01 B2M MHCI RAKFKQLL BZLF1 EBV PMID:34811538 tetramer-sort yes amplicon-seq effector memory T cells T1D T1D_5 chip0423_492874 PBMC +7583 CAVGSDMRF TRAV12-2*01 TRAJ43*01 CASSLAVGEGPQHF TRBV7-9*01 TRBJ1-5*01 HLA-B*08:01 B2M MHCI RAKFKQLL BZLF1 EBV PMID:34811538 tetramer-sort yes amplicon-seq effector memory T cells T1D T1D_4 chip0423_261196 PBMC +7584 CAVSDGEGAQKLVF TRAV8-6*01 TRAJ54*01 CASSLPVLAGPNTAAFF TRBV7-3*01 TRBJ1-1*01 HLA-B*08:01 B2M MHCI RAKFKQLL BZLF1 EBV PMID:34811538 tetramer-sort yes amplicon-seq effector memory T cells T1D T1D_4 chip0423_242746 PBMC +7585 CAATETSYDKVIF TRAV13-1*01 TRAJ50*01 CASSPLGSNEKLFF TRBV7-9*01 TRBJ1-4*01 HLA-B*08:01 B2M MHCI RAKFKQLL BZLF1 EBV PMID:34811538 tetramer-sort yes amplicon-seq effector memory T cells T1D T1D_5 chip0423_30735 PBMC +7586 CASSLSSGGRGEQYF TRBV4-1*01 TRBJ2-7*01 HLA-B*08:01 B2M MHCI RAKFKQLL BZLF1 EBV PMID:34811538 tetramer-sort yes amplicon-seq effector T cells T1D T1D_5 chip0423_644537 PBMC +7587 CAATETSYDKVIF TRAV13-1*01 TRAJ50*01 CASSPPGRNEKLFF TRBV12-3*01,TRBV12-4*01 TRBJ1-4*01 HLA-B*08:01 B2M MHCI RAKFKQLL BZLF1 EBV PMID:34811538 tetramer-sort yes amplicon-seq effector memory T cells T1D T1D_5 chip0423_387745 PBMC +7588 CASSFTGVPGELFF TRBV12-3*01,TRBV12-4*01 TRBJ2-2*01 HLA-B*08:01 B2M MHCI RAKFKQLL BZLF1 EBV PMID:34811538 tetramer-sort yes amplicon-seq effector memory T cells T1D T1D_5 chip0423_188548 PBMC +7589 CAVRDTTWDDKIIF TRAV3*01 TRAJ30*01 HLA-B*08:01 B2M MHCI FLRGRAYGL EBNA3A EBV PMID:34811538 tetramer-sort yes amplicon-seq effector memory T cells T1D T1D_4 chip0423_637373 PBMC +7590 CARSPYDKVIF TRAV24*01 TRAJ50*01 CASSTLERGYYNEQFF TRBV7-2*01 TRBJ2-1*01 HLA-A*01:01 B2M MHCI LTSLTILQLY G6PC2 HomoSapiens PMID:34811538 tetramer-sort yes amplicon-seq Naive T cells tet_neg chip0423_597755 PBMC +7591 CASWAGNTGQLIF TRAV23/DV6*01 TRAJ37*01 HLA-A*02:01 B2M MHCI GILGFVFTL M1 InfluenzaA PMID:34811538 tetramer-sort yes amplicon-seq transitional T cells between effector and memory populations T1D T1D_6 chip0423_835377 PBMC +7592 CASSLAGREGTQYF TRBV11-3*01,TRBV11-2*01 TRBJ2-3*01 HLA-B*08:01 B2M MHCI ELRSRYWAI NP InfluenzaA PMID:34811538 tetramer-sort yes amplicon-seq transitional T cells between effector and memory populations T1D T1D_6 chip0423_29679 PBMC +7593 CASSRVGTGVYEQYF TRBV7-9*01 TRBJ2-7*01 HLA-A*01:01 B2M MHCI QQDKHYDLSY GAD2 HomoSapiens PMID:34811538 tetramer-sort yes amplicon-seq Naive T cells T1D T1D_5 chip0423_588332 PBMC +7594 CAMRSGAGNKLTF TRAV12-3*01 TRAJ17*01 CAISEGQGLFYEQYF TRBV10-3*01 TRBJ2-7*01 HLA-A*01:01 B2M MHCI PTHEEHLFY G6PC2 HomoSapiens PMID:34811538 tetramer-sort yes amplicon-seq Naive T cells T1D T1D_6 chip0423_76983 PBMC +7595 CAVNRFLAARGSTLGRLYF TRAV12-2*01,TRAV8-1*01 TRAJ18*01 CASSQEVTDTQYF TRBV4-3*01 TRBJ2-3*01 HLA-A*02:01 B2M MHCI YLLEMLWRL LMP1 EBV PMID:34811538 tetramer-sort yes amplicon-seq central memory T cells T1D T1D_4 chip0423_170232 PBMC +7596 CALKTPYTGANSKLTF TRAV19*01 TRAJ56*01 CASTGDRGVEKLFF TRBV4-1*01 TRBJ1-4*01 HLA-B*08:01 B2M MHCI QAKWRLQTL EBNA3A EBV PMID:34811538 tetramer-sort yes amplicon-seq Naive T cells T1D T1D_5 chip0423_506305 PBMC +7598 CASSLTVLAGPNTEAFF TRBV7-3*01 TRBJ1-1*01 HLA-B*08:01 B2M MHCI RAKFKQLL BZLF1 EBV PMID:34811538 tetramer-sort yes amplicon-seq effector memory T cells T1D T1D_4 chip0423_216147 PBMC +7599 CASQLAGGTGELFF TRBV24-1*01 TRBJ2-2*01 HLA-B*08:01 B2M MHCI RAKFKQLL BZLF1 EBV PMID:34811538 tetramer-sort yes amplicon-seq effector T cells T1D T1D_5 chip0423_313266 PBMC +7600 CAAAETSYDKVIF TRAV13-1*01 TRAJ50*01 HLA-B*08:01 B2M MHCI RAKFKQLL BZLF1 EBV PMID:34811538 tetramer-sort yes amplicon-seq transitional T cells between effector and memory populations T1D T1D_5 chip0423_51811 PBMC +7602 CAAQETSYDKVIF TRAV13-1*01 TRAJ50*01 CASTQVDRPNYGYTF TRBV7-9*01 TRBJ1-2*01 HLA-B*08:01 B2M MHCI RAKFKQLL BZLF1 EBV PMID:34811538 tetramer-sort yes amplicon-seq effector memory T cells T1D T1D_5 chip0423_845584 PBMC +7603 CASSPLGGSSGNTIYF TRBV7-9*01 TRBJ1-3*01 HLA-B*08:01 B2M MHCI RAKFKQLL BZLF1 EBV PMID:34811538 tetramer-sort yes amplicon-seq effector memory T cells T1D T1D_5 chip0423_477793 PBMC +7604 CASSQVNNPGDGYTF TRBV14*01 TRBJ1-2*01 HLA-B*08:01 B2M MHCI QAKWRLQTL EBNA3A EBV PMID:34811538 tetramer-sort yes amplicon-seq effector memory T cells T1D T1D_4 chip0423_507063 PBMC +7605 RAAYLGVVADGVSF TRAV36/DV7*01 TRAJ45*01 CAINTRDDARDPYEQYF TRBV6-2*01,TRBV6-3*01 TRBJ2-7*01 HLA-A*02:01 B2M MHCI LNIDLLWSV IGRP HomoSapiens PMID:34811538 tetramer-sort yes amplicon-seq Naive T cells T1D T1D_6 chip0423_429653 PBMC +7606 CASSLWYRVETQYF TRBV5-6*01 TRBJ2-5*01 HLA-A*01:01 B2M MHCI CTELKLSDY NP InfluenzaA PMID:34811538 tetramer-sort yes amplicon-seq effector T cells healthy healthy_3 chip0423_837678 PBMC +7607 CAVSRGDFGNEKLTF TRAV12-2*01 TRAJ48*01 CSARDGPSSSGANVLTF TRBV20-1*01 TRBJ2-6*01 HLA-A*02:01 B2M MHCI LLAGIGTVPI PGT HomoSapiens PMID:34811538 tetramer-sort yes amplicon-seq central memory T cells T1D T1D_4 chip0423_715315 PBMC +7608 CASSLRSGAVEQYF TRBV19*01 TRBJ2-7*01 HLA-A*02:01 B2M MHCI GILGFVFTL M1 InfluenzaA PMID:34811538 tetramer-sort yes amplicon-seq transitional T cells between effector and memory populations T1D T1D_6 chip0423_506418 PBMC +7609 CASSLLGRSNTEAFF TRBV7-9*01 TRBJ1-1*01 HLA-B*08:01 B2M MHCI RAKFKQLL BZLF1 EBV PMID:34811538 tetramer-sort yes amplicon-seq effector T cells T1D T1D_5 chip0423_573085 PBMC +7610 CATAGGGTSYGKLTF TRAV17*01 TRAJ52*01 CASKTVTGPNQPQHF TRBV27*01 TRBJ1-5*01 HLA-B*08:01 B2M MHCI NLIFKWIL G6PC2 HomoSapiens PMID:34811538 tetramer-sort yes amplicon-seq Naive T cells T1D T1D_6 chip0423_119031 PBMC +7611 CAVKTPYDKVIF TRAV21*01 TRAJ50*01 CASRLGQGRSPLHF TRBV5-1*01 TRBJ1-6*01 HLA-B*08:01 B2M MHCI MMIARFKM GAD2 HomoSapiens PMID:34811538 tetramer-sort yes amplicon-seq Naive T cells T1D T1D_4 chip0423_859524 PBMC +7612 CAAQETSYDKVIF TRAV13-1*01 TRAJ50*01 CASSWTGNEQSF TRBV27*01 TRBJ2-1*01 HLA-B*08:01 B2M MHCI RAKFKQLL BZLF1 EBV PMID:34811538 tetramer-sort yes amplicon-seq effector T cells T1D T1D_5 chip0423_849434 PBMC +7613 CAMSDDGGSNYKLTF TRAV12-3*01 TRAJ53*01 HLA-A*02:01 B2M MHCI LLFNILGGWV NS4B HCV PMID:34811538 tetramer-sort yes amplicon-seq Naive T cells T1D T1D_6 chip0423_844687 PBMC +7614 CAALGSWgg??ctGSYLLTF TRAV8-3*01 TRAJ28*01 CASSPQGGGYGYTF TRBV6-1*01 TRBJ1-2*01 HLA-A*02:01 B2M MHCI FLYALALLL LMP2 EBV PMID:34811538 tetramer-sort yes amplicon-seq transitional T cells between effector and memory populations healthy healthy_4 chip0423_37854 PBMC +7615 CASSPTTGFSGELLF TRBV4-3*01 TRBJ2-2*01 HLA-B*08:01 B2M MHCI FLRGRAYGL EBNA3A EBV PMID:34811538 tetramer-sort yes amplicon-seq effector memory T cells T1D T1D_6 chip0423_242586 PBMC +7616 CAPRRQS??gGYNKLIF TRAV13-1*01 TRAJ4*01 CASSLAVGEGPQHF TRBV7-9*01 TRBJ1-5*01 HLA-B*08:01 B2M MHCI RAKFKQLL BZLF1 EBV PMID:34811538 tetramer-sort yes amplicon-seq effector memory T cells T1D T1D_4 chip0423_212847 PBMC +7617 CAMRGGIa?cPGGKLIF TRAV14/DV4*01 TRAJ23*01 CASSVAAVPNQPQHF TRBV9*01 TRBJ1-5*01 HLA-B*08:01 B2M MHCI YLKDQQLL gp160 HIV-1 PMID:34811538 tetramer-sort yes amplicon-seq Naive T cells T1D T1D_5 chip0423_172654 PBMC +7618 CASSPPAGNEQFF TRBV7-9*01 TRBJ2-1*01 HLA-A*02:01 B2M MHCI LLAGIGTVPI PGT HomoSapiens PMID:34811538 tetramer-sort yes amplicon-seq Naive T cells T1D T1D_4 chip0423_323971 PBMC +7619 CASMDRGTGELFF TRBV5-1*01 TRBJ2-2*01 HLA-A*02:01 B2M MHCI LLAGIGTVPI PGT HomoSapiens PMID:34811538 tetramer-sort yes amplicon-seq Naive T cells T1D T1D_6 chip0423_688881 PBMC +7620 CAMSEGNFGNEKLTF TRAV12-3*01 TRAJ48*01 CASSLFASQETQYF TRBV5-6*01 TRBJ2-5*01 HLA-A*02:01 B2M MHCI LLAGIGTVPI PGT HomoSapiens PMID:34811538 tetramer-sort yes amplicon-seq Naive T cells T1D T1D_4 chip0423_444233 PBMC +7622 CVVSDRYNQGGKLIF TRAV8-2*01 TRAJ23*01 CASSLWREGPNEQFF TRBV27*01 TRBJ2-1*01 HLA-A*02:01 B2M MHCI LNIDLLWSV IGRP HomoSapiens PMID:34811538 tetramer-sort yes amplicon-seq Naive T cells healthy healthy_3 chip0423_47110 PBMC +7624 CASSLGREIGPIEQFF TRBV7-8*01 TRBJ2-1*01 HLA-B*08:01 B2M MHCI RAKFKQLL BZLF1 EBV PMID:34811538 tetramer-sort yes amplicon-seq effector memory T cells T1D T1D_5 chip0423_688977 PBMC +7625 CASSLAVGEGPQHF TRBV7-9*01 TRBJ1-5*01 HLA-B*08:01 B2M MHCI RAKFKQLL BZLF1 EBV PMID:34811538 tetramer-sort yes amplicon-seq effector memory T cells T1D T1D_4 chip0423_734089 PBMC +7626 GAVGDL*Lct??ctSNSGKLIF TRAV8-3*01,TRAV3*01 TRAJ37*01 CSVLSGGGTGELFF TRBV29-1*01 TRBJ2-2*01 HLA-B*08:01 B2M MHCI ILKLQVFL IAPP HomoSapiens PMID:34811538 tetramer-sort yes amplicon-seq Naive T cells T1D T1D_6 chip0423_844536 PBMC +7628 CASSLTVLAGPNTEAFF TRBV7-3*01 TRBJ1-1*01 HLA-B*08:01 B2M MHCI RAKFKQLL BZLF1 EBV PMID:34811538 tetramer-sort yes amplicon-seq effector memory T cells T1D T1D_4 chip0423_769376 PBMC +7629 CAVRAPTWVGTLIF TRAV3*01 TRAJ30*01 CASSLGGGEGASEQFF TRBV7-6*01 TRBJ2-1*01 HLA-B*08:01 B2M MHCI FLRGRAYGL EBNA3A EBV PMID:34811538 tetramer-sort yes amplicon-seq effector memory T cells T1D T1D_4 chip0423_478798 PBMC +7630 CAVITFRSNDYKLSF TRAV12-2*01 TRAJ20*01 CASSHGQGENTEAFF TRBV4-1*01 TRBJ1-1*01 HLA-B*08:01 B2M MHCI RAKFKQLL BZLF1 EBV PMID:34811538 tetramer-sort yes amplicon-seq effector memory T cells T1D T1D_4 chip0423_768128 PBMC +7631 SAAAYTSYAMVLH TRAV13-1*01 TRAJ50*01 CASQLAGGTGELFF TRBV24-1*01 TRBJ2-2*01 HLA-B*08:01 B2M MHCI RAKFKQLL BZLF1 EBV PMID:34811538 tetramer-sort yes amplicon-seq effector memory T cells T1D T1D_5 chip0423_528899 PBMC +7632 CASSFLGQGSPYEQYF TRBV7-9*01 TRBJ2-7*01 HLA-B*08:01 B2M MHCI RAKFKQLL BZLF1 EBV PMID:34811538 tetramer-sort yes amplicon-seq effector T cells T1D T1D_5 chip0423_312037 PBMC +7633 CVVNFDYKLSF TRAV12-1*01 TRAJ20*01 CASSPSGSGELFF TRBV19*01 TRBJ2-2*01 HLA-A*01:01 B2M MHCI LTSLTILQLY G6PC2 HomoSapiens PMID:34811538 tetramer-sort yes amplicon-seq Naive T cells T1D T1D_6 chip0423_504992 PBMC +7634 CLLPLVGGASYGSLTF TRAV26-2*01 TRAJ52*01 CASSSGQAYEQYF TRBV7-8*01 TRBJ2-7*01 HLA-B*08:01 B2M MHCI FLRGRAYGL EBNA3A EBV PMID:34811538 tetramer-sort yes amplicon-seq effector T cells T1D T1D_4 chip0423_383643 PBMC +7635 CAAAETSYDKVRF TRAV13-1*01 TRAJ50*01 HLA-B*08:01 B2M MHCI RAKFKQLL BZLF1 EBV PMID:34811538 tetramer-sort yes amplicon-seq effector T cells T1D T1D_5 chip0423_582653 PBMC +7636 CAVFDNYGQNFVF TRAV2*01 TRAJ26*01 CASSLSNQPQHF TRBV12-3*01,TRBV12-4*01 TRBJ1-5*01 HLA-A*02:01 B2M MHCI SLAAGVKLL PTPRN HomoSapiens PMID:34811538 tetramer-sort yes amplicon-seq Naive T cells T1D T1D_6 chip0423_33447 PBMC +7637 CALSGTTGKLVF TRAV20*01 TRAJ37*01 CASSQWDNQPQHF TRBV4-1*01 TRBJ1-5*01 HLA-B*08:01 B2M MHCI WMRLLPLL INS HomoSapiens PMID:34811538 tetramer-sort yes amplicon-seq transitional T cells between effector and memory populations T1D T1D_6 chip0423_686559 PBMC +7638 CAVSDGEGAQKLVF TRAV8-6*01 TRAJ54*01 CASSLTVLAGPNTEAFF TRBV7-3*01 TRBJ1-1*01 HLA-B*08:01 B2M MHCI RAKFKQLL BZLF1 EBV PMID:34811538 tetramer-sort yes amplicon-seq effector memory T cells T1D T1D_4 chip0423_131261 PBMC +7639 CATEGTSGYSTLTF TRAV17*01 TRAJ11*01 CASSYSGGYYGYTF TRBV6-5*01 TRBJ1-2*01 HLA-A*02:01 B2M MHCI FLYALALLL LMP2 EBV PMID:34811538 tetramer-sort yes amplicon-seq effector memory T cells T1D T1D_4 chip0423_571823 PBMC +7640 CASSLAGREGTQYF TRBV11-3*01 TRBJ2-3*01 HLA-B*08:01 B2M MHCI ELRSRYWAI NP InfluenzaA PMID:34811538 tetramer-sort yes amplicon-seq transitional T cells between effector and memory populations T1D T1D_6 chip0423_196815 PBMC +7641 CAMREGEAGGFKTIF TRAV14/DV4*01 TRAJ9*01 CASSPLGGVNSPLHF TRBV7-9*01 TRBJ1-6*01 HLA-B*08:01 B2M MHCI RAKFKQLL BZLF1 EBV PMID:34811538 tetramer-sort yes amplicon-seq effector memory T cells T1D T1D_5 chip0423_63091 PBMC +7642 CASQLAGGTGELFF TRBV24-1*01 TRBJ2-2*01 HLA-B*08:01 B2M MHCI RAKFKQLL BZLF1 EBV PMID:34811538 tetramer-sort yes amplicon-seq transitional T cells between effector and memory populations T1D T1D_5 chip0423_185244 PBMC +7644 CASGPDISYSYEQYF TRBV12-5*01 TRBJ2-7*01 HLA-B*08:01 B2M MHCI RAKFKQLL BZLF1 EBV PMID:34811538 tetramer-sort yes amplicon-seq effector memory T cells T1D T1D_5 chip0423_86354 PBMC +7645 CSAGRDGTNEKLFF TRBV29-1*01 TRBJ1-4*01 HLA-A*02:01 B2M MHCI GLCTLVAML BLMF1 EBV PMID:34811538 tetramer-sort yes amplicon-seq effector memory T cells T1D T1D_6 chip0423_428523 PBMC +7646 CIVREGGGADGLPF TRAV26-1*01 TRAJ45*01 CASSLAVGEGPQHF TRBV7-9*01 TRBJ1-5*01 HLA-B*08:01 B2M MHCI RAKFKQLL BZLF1 EBV PMID:34811538 tetramer-sort yes amplicon-seq effector T cells T1D T1D_4 chip0423_325534 PBMC +7647 CATRAIEGANNLFF TRAV14/DV4*01 TRAJ36*01 CASSLSSGGRGEQYF TRBV4-1*01 TRBJ2-7*01 HLA-B*08:01 B2M MHCI RAKFKQLL BZLF1 EBV PMID:34811538 tetramer-sort yes amplicon-seq effector T cells T1D T1D_5 chip0423_606060 PBMC +7648 CASSEDSNYGYTF TRBV2*01 TRBJ1-2*01 HLA-A*01:01 B2M MHCI STNVGSNTY IAPP HomoSapiens PMID:34811538 tetramer-sort yes amplicon-seq effector memory T cells T1D T1D_6 chip0423_189394 PBMC +7649 CAASDRLPGGSYIPTF TRAV13-1*01 TRAJ6*01 CSATNQYDGPDTEAFF TRBV20-1*01 TRBJ1-1*01 HLA-B*08:01 B2M MHCI RAKFKQLL BZLF1 EBV PMID:34811538 tetramer-sort yes amplicon-seq transitional T cells between effector and memory populations T1D T1D_4 chip0423_437286 PBMC +7650 CAGAATDSWGKLQF TRAV27*01 TRAJ24*01 CASSALGHRNTEAFF TRBV7-9*01 TRBJ1-1*01 HLA-B*08:01 B2M MHCI RAKFKQLL BZLF1 EBV PMID:34811538 tetramer-sort yes amplicon-seq effector memory T cells T1D T1D_5 chip0423_689804 PBMC +7651 CAATETSYDKVIF TRAV13-1*01 TRAJ50*01 CASSPLGQGGDYGYTF TRBV7-9*01 TRBJ1-2*01 HLA-B*08:01 B2M MHCI RAKFKQLL BZLF1 EBV PMID:34811538 tetramer-sort yes amplicon-seq effector memory T cells T1D T1D_5 chip0423_144892 PBMC +7652 CAASETSYDKVIF TRAV13-1*01 TRAJ50*01 CASSAHRGGYTF TRBV7-8*01 TRBJ1-2*01 HLA-B*08:01 B2M MHCI RAKFKQLL BZLF1 EBV PMID:34811538 tetramer-sort yes amplicon-seq effector memory T cells T1D T1D_5 chip0423_571530 PBMC +7654 CILPLAGGTSYGKLTF TRAV26-2*01 TRAJ52*01 CASSLGQAYEQYF TRBV7-8*01 TRBJ2-7*01 HLA-B*08:01 B2M MHCI FLRGRAYGL EBNA3A EBV PMID:34811538 tetramer-sort yes amplicon-seq transitional T cells between effector and memory populations T1D T1D_6 chip0423_706967 PBMC +7655 GAASKIGga?GGADGLTL TRAV23/DV6*01 TRAJ45*01 CASSLGQAYEQYF TRBV7-8*01 TRBJ2-7*01 HLA-B*08:01 B2M MHCI FLRGRAYGL EBNA3A EBV PMID:34811538 tetramer-sort yes amplicon-seq effector memory T cells T1D T1D_6 chip0423_38400 PBMC +7656 CSVGKIGTGQFF TRBV29-1*01 TRBJ2-1*01 HLA-B*08:01 B2M MHCI RAKFKQLL BZLF1 EBV PMID:34811538 tetramer-sort yes amplicon-seq effector memory T cells T1D T1D_4 chip0423_624767 PBMC +7657 CASSQVNNPGDGYTF TRBV14*01 TRBJ1-2*01 HLA-B*08:01 B2M MHCI QAKWRLQTL EBNA3A EBV PMID:34811538 tetramer-sort yes amplicon-seq effector memory T cells T1D T1D_4 chip0423_582689 PBMC +7658 CASSPRLLSGTGELFF TRBV7-9*01 TRBJ2-2*01 HLA-A*02:01 B2M MHCI LLAGIGTVPI PGT HomoSapiens PMID:34811538 tetramer-sort yes amplicon-seq central memory T cells healthy healthy_3 chip0423_411294 PBMC +7659 CSVGSGGTNEKLFF TRBV29-1*01 TRBJ1-4*01 HLA-A*02:01 B2M MHCI GLCTLVAML BLMF1 EBV PMID:34811538 tetramer-sort yes amplicon-seq effector T cells undetermined chip0423_386267 PBMC +7660 CASSQVNNPGGGHTF TRBV14*01 TRBJ1-2*01 HLA-B*08:01 B2M MHCI QAKWRLQTL EBNA3A EBV PMID:34811538 tetramer-sort yes amplicon-seq effector memory T cells T1D T1D_4 chip0423_359393 PBMC +7661 CSAGRDGTNEKLFF TRBV29-1*01 TRBJ1-4*01 HLA-A*02:01 B2M MHCI GLCTLVAML BLMF1 EBV PMID:34811538 tetramer-sort yes amplicon-seq effector memory T cells T1D T1D_6 chip0423_251166 PBMC +7662 CASTGTSDSTDTQYF TRBV2*01 TRBJ2-3*01 HLA-A*01:01 B2M MHCI CTELKLSDY NP InfluenzaA PMID:34811538 tetramer-sort yes amplicon-seq transitional T cells between effector and memory populations healthy healthy_3 chip0423_200808 PBMC +7663 CAAAETSYDKVIF TRAV13-1*01 TRAJ50*01 CASQLAGGTGELFF TRBV24-1*01 TRBJ2-2*01 HLA-B*08:01 B2M MHCI RAKFKQLL BZLF1 EBV PMID:34811538 tetramer-sort yes amplicon-seq effector memory T cells T1D T1D_5 chip0423_78549 PBMC +7664 CASSLVDKPYEQYF TRBV7-9*01 TRBJ2-7*01 HLA-B*08:01 B2M MHCI RAKFKQLL BZLF1 EBV PMID:34811538 tetramer-sort yes amplicon-seq effector T cells T1D T1D_5 chip0423_730564 PBMC +7665 CASSLSSGGRGEQYF TRBV4-1*01 TRBJ2-7*01 HLA-B*08:01 B2M MHCI RAKFKQLL BZLF1 EBV PMID:34811538 tetramer-sort yes amplicon-seq effector memory T cells T1D T1D_5 chip0423_333364 PBMC +7666 CAVSERIRGAQKLVF TRAV8-4*01 TRAJ54*01 CASSLGGGHTDTQYF TRBV5-4*01 TRBJ2-3*01 HLA-A*02:01 B2M MHCI GILGFVFTL M1 InfluenzaA PMID:34811538 tetramer-sort yes amplicon-seq central memory T cells T1D T1D_4 chip0423_792231 PBMC +7667 CASSVVGGDYGYTF TRBV2*01 TRBJ1-2*01 HLA-B*08:01 B2M MHCI FLRGRAYGL EBNA3A EBV PMID:34811538 tetramer-sort yes amplicon-seq effector memory T cells T1D T1D_4 chip0423_835423 PBMC +7668 CAMSLSNFGNEKLTF TRAV12-3*01 TRAJ48*01 CASSRNKGRETQYF TRBV14*01 TRBJ2-5*01 HLA-A*02:01 B2M MHCI LLAGIGTVPI PGT HomoSapiens PMID:34811538 tetramer-sort yes amplicon-seq Naive T cells T1D T1D_6 chip0423_100271 PBMC +7669 CVVSDPPIca?GGGADGLTF TRAV8-2*01 TRAJ45*01 CSATDRGESGANVLTF TRBV20-1*01 TRBJ2-6*01 HLA-A*02:01 B2M MHCI LLFNILGGWV NS4B HCV PMID:34811538 tetramer-sort yes amplicon-seq transitional T cells between effector and memory populations healthy healthy_4 chip0423_366548 PBMC +7670 CASSQVHNPGDGYTF TRBV14*01 TRBJ1-2*01 HLA-B*08:01 B2M MHCI QAKWRLQTL EBNA3A EBV PMID:34811538 tetramer-sort yes amplicon-seq effector memory T cells T1D T1D_4 chip0423_480739 PBMC +7671 CAVWRDGAYEQYF TRBV28*01 TRBJ2-7*01 HLA-A*02:01 B2M MHCI YLLEMLWRL LMP1 EBV PMID:34811538 tetramer-sort yes amplicon-seq effector memory T cells T1D T1D_4 chip0423_258486 PBMC +7672 CAVCRGGCWASQINF TRAV14/DV4*01 TRAJ3*01 CSVGTSGGYTF TRBV29-1*01 TRBJ1-2*01 HLA-B*08:01 B2M MHCI RAKFKQLL BZLF1 EBV PMID:34811538 tetramer-sort yes amplicon-seq effector T cells T1D T1D_5 chip0423_189077 PBMC +7673 CAFDSGCRTLTF TRAV17*01 TRAJ11*01 CASSVQGGTEAFF TRBV25-1*01 TRBJ1-1*01 HLA-A*02:01 B2M MHCI VAANIVLTV ZNT8 HomoSapiens PMID:34811538 tetramer-sort yes amplicon-seq Naive T cells T1D T1D_6 chip0423_145361 PBMC +7674 CALSEGQGAQKPVF TRAV9-2*01 TRAJ54*01 CASSFSVRSWTNGYTF TRBV28*01 TRBJ1-2*01 HLA-B*08:01 B2M MHCI YAYAKWKL ZNT8 HomoSapiens PMID:34811538 tetramer-sort yes amplicon-seq Naive T cells T1D T1D_5 chip0423_256104 PBMC +7675 CAVTNTGNQFYF TRAV12-2*01 TRAJ49*01 CASTEGQGPAQHF TRBV2*01 TRBJ1-5*01 HLA-A*02:01 B2M MHCI LLAGIGTVPI PGT HomoSapiens PMID:34811538 tetramer-sort yes amplicon-seq Naive T cells T1D T1D_4 chip0423_864213 PBMC +7676 CILPLPGGTSHGKLTF TRAV26-2*01 TRAJ52*01 CASSLGQAYEQYF TRBV7-8*01 TRBJ2-7*01 HLA-B*08:01 B2M MHCI FLRGRAYGL EBNA3A EBV PMID:34811538 tetramer-sort yes amplicon-seq effector T cells T1D T1D_6 chip0423_849607 PBMC +7677 CAMSLGGYNKLIF TRAV12-3*01 TRAJ4*01 CASSVEDQGAREQYF TRBV9*01 TRBJ2-7*01 HLA-A*02:01 B2M MHCI LLAGIGTVPI PGT HomoSapiens PMID:34811538 tetramer-sort yes amplicon-seq Naive T cells healthy healthy_4 chip0423_187745 PBMC +7678 CASRAGGRLIF TRAV8-1*01 TRAJ23*01 CASSPAFLSPGYYGYTF TRBV3-1*01 TRBJ1-2*01 HLA-A*02:01 B2M MHCI YVLDHLIVV BRLF1 EBV PMID:34811538 tetramer-sort yes amplicon-seq Naive T cells T1D T1D_6 chip0423_717920 PBMC +7679 CAVWAGNMLTF TRAV8-1*01 TRAJ39*01 HLA-A*02:01 B2M MHCI YVLDHLIVV BRLF1 EBV PMID:34811538 tetramer-sort yes amplicon-seq effector memory T cells T1D T1D_6 chip0423_632072 PBMC +7681 CASSLRTAEQFF TRBV5-1*01 TRBJ2-1*01 HLA-B*08:01 B2M MHCI CPLSKILL LMP2A EBV PMID:34811538 tetramer-sort yes amplicon-seq Naive T cells T1D T1D_5 chip0423_759826 PBMC +7683 CASSLEGQASSYEQYF TRBV5-1*01 TRBJ2-7*01 HLA-A*02:01 B2M MHCI CLGGLLTMV LMP2A EBV PMID:34811538 tetramer-sort yes amplicon-seq effector memory T cells T1D T1D_4 chip0423_619526 PBMC +7684 CAVWRDGAYEQYF TRBV28*01 TRBJ2-7*01 HLA-A*02:01 B2M MHCI YLLEMLWRL LMP1 EBV PMID:34811538 tetramer-sort yes amplicon-seq effector memory T cells T1D T1D_4 chip0423_250314 PBMC +7685 CVVARSNFGNEKLTF TRAV12-1*01 TRAJ48*01 CASSEETGFGANVLTF TRBV2*01 TRBJ2-6*01 HLA-A*02:01 B2M MHCI LLAGIGTVPI PGT HomoSapiens PMID:34811538 tetramer-sort yes amplicon-seq Naive T cells T1D T1D_4 chip0423_116158 PBMC +7686 CAVNSFTSGTYKYIF TRAV12-2*01 TRAJ40*01 CASSPPYGEREEDTQYF TRBV18*01 TRBJ2-3*01 HLA-A*02:01 B2M MHCI FLWSVFWLI IGRP HomoSapiens PMID:34811538 tetramer-sort yes amplicon-seq Naive T cells T1D T1D_6 chip0423_802781 PBMC +7687 CAMSSMDTGRRALTF TRAV12-3*01 TRAJ5*01 CASSLHDTEAFF TRBV28*01 TRBJ1-1*01 HLA-B*08:01 B2M MHCI RAKFKQLL BZLF1 EBV PMID:34811538 tetramer-sort yes amplicon-seq effector T cells T1D T1D_5 chip0423_687690 PBMC +7688 CASSLAVGEGPQHF TRBV7-9*01 TRBJ1-5*01 HLA-B*08:01 B2M MHCI RAKFKQLL BZLF1 EBV PMID:34811538 tetramer-sort yes amplicon-seq effector T cells T1D T1D_4 chip0423_161905 PBMC +7690 CAARETSYDKVIF TRAV13-1*01 TRAJ50*01 CASSLVQGYEQYF TRBV7-9*01 TRBJ2-7*01 HLA-B*08:01 B2M MHCI RAKFKQLL BZLF1 EBV PMID:34811538 tetramer-sort yes amplicon-seq effector memory T cells T1D T1D_5 chip0423_173181 PBMC +7691 CASQLAGGTGELFF TRBV24-1*01 TRBJ2-2*01 HLA-B*08:01 B2M MHCI RAKFKQLL BZLF1 EBV PMID:34811538 tetramer-sort yes amplicon-seq effector memory T cells T1D T1D_5 chip0423_126950 PBMC +7692 CASSYSSTGEYF TRBV6-2*01,TRBV6-3*01 TRBJ2-7*01 HLA-A*02:01 B2M MHCI YLLEMLWRL LMP1 EBV PMID:34811538 tetramer-sort yes amplicon-seq central memory T cells T1D T1D_4 chip0423_27128 PBMC +7693 CALSESYSSASKIIF TRAV19*01 TRAJ3*01 HLA-A*01:01 B2M MHCI HSNLNDATY NP InfluenzaA PMID:34811538 tetramer-sort yes amplicon-seq Naive T cells healthy healthy_3 chip0423_87655 PBMC +7694 CILPLAGGTSYGKLTF TRAV26-2*01 TRAJ52*01 CASSLGQAYEQYF TRBV7-8*01 TRBJ2-7*01 HLA-B*08:01 B2M MHCI FLRGRAYGL EBNA3A EBV PMID:34811538 tetramer-sort yes amplicon-seq central memory T cells T1D T1D_6 chip0423_310549 PBMC +7695 CAFTGANNLFF TRAV12-1*01 TRAJ36*01 CASSTYYNEQFF TRBV14*01 TRBJ2-1*01 HLA-A*02:01 B2M MHCI LLAGIGTVPI PGT HomoSapiens PMID:34811538 tetramer-sort yes amplicon-seq transitional T cells between effector and memory populations healthy healthy_3 chip0423_42558 PBMC +7696 CALSEVGGYGGSQGNLIF TRAV19*01 TRAJ42*01 CASSSTSGSTDTQYF TRBV7-9*01 TRBJ2-3*01 HLA-B*08:01 B2M MHCI SLKKGAAAL GAD2 HomoSapiens PMID:34811538 tetramer-sort yes amplicon-seq Naive T cells T1D T1D_5 chip0423_614841 PBMC +7697 CILPLAGGTSYGKLTF TRAV26-2*01 TRAJ52*01 CASSLGQAYEQYF TRBV7-8*01 TRBJ2-7*01 HLA-B*08:01 B2M MHCI FLRGRAYGL EBNA3A EBV PMID:34811538 tetramer-sort yes amplicon-seq transitional T cells between effector and memory populations T1D T1D_4 chip0423_438249 PBMC +7698 CAGGGSQGNLIF TRAV27*01 TRAJ42*01 CASSIRSSYEQFF TRBV19*01 TRBJ2-1*01 HLA-A*02:01 B2M MHCI GILGFVFTL M1 InfluenzaA PMID:34811538 tetramer-sort yes amplicon-seq transitional T cells between effector and memory populations T1D T1D_6 chip0423_769946 PBMC +7699 CASSLWYRVATQYF TRBV5-6*01 TRBJ2-5*01 HLA-A*01:01 B2M MHCI CTELKLSDY NP InfluenzaA PMID:34811538 tetramer-sort yes amplicon-seq effector T cells healthy healthy_3 chip0423_640486 PBMC +7700 CASSLGQGYSPLHF TRBV5-5*01 TRBJ1-6*01 HLA-B*08:01 B2M MHCI EIRTQYEAM GFAP HomoSapiens PMID:34811538 tetramer-sort yes amplicon-seq Naive T cells T1D T1D_6 chip0423_518963 PBMC +7701 CIVREGGGADGLTF TRAV26-1*01 TRAJ45*01 CASSLAVGEGPQHF TRBV7-9*01 TRBJ1-5*01 HLA-B*08:01 B2M MHCI RAKFKQLL BZLF1 EBV PMID:34811538 tetramer-sort yes amplicon-seq effector memory T cells T1D T1D_4 chip0423_328818 PBMC +7702 CAMRAIEGANNLFF TRAV14/DV4*01 TRAJ36*01 HLA-B*08:01 B2M MHCI RAKFKQLL BZLF1 EBV PMID:34811538 tetramer-sort yes amplicon-seq effector memory T cells T1D T1D_5 chip0423_40364 PBMC +7703 CASSLELGLPYEQYF TRBV5-1*01 TRBJ2-7*01 HLA-B*08:01 B2M MHCI QAKWRLQTL EBNA3A EBV PMID:34811538 tetramer-sort yes amplicon-seq transitional T cells between effector and memory populations T1D T1D_4 chip0423_776357 PBMC +7704 CILPLAGGTSYGKLTF TRAV26-2*01 TRAJ52*01 CASSLPFGIEPQHF TRBV5-1*01 TRBJ1-5*01 HLA-B*08:01 B2M MHCI FLRGRAYGL EBNA3A EBV PMID:34811538 tetramer-sort yes amplicon-seq effector memory T cells T1D T1D_4 chip0423_731601 PBMC +7705 CILPLAGGTSYGKLTF TRAV26-2*01 TRAJ52*01 CASSLGQAYEQYF TRBV7-8*01 TRBJ2-7*01 HLA-B*08:01 B2M MHCI FLRGRAYGL EBNA3A EBV PMID:34811538 tetramer-sort yes amplicon-seq effector memory T cells T1D T1D_6 chip0423_86691 PBMC +7706 CAMRKGg?tAQKLVF TRAV14/DV4*01 TRAJ54*01 CSASRDSYEQYF TRBV20-1*01 TRBJ2-7*01 HLA-A*02:01 B2M MHCI YLLEMLWRL LMP1 EBV PMID:34811538 tetramer-sort yes amplicon-seq central memory T cells T1D T1D_4 chip0423_875266 PBMC +7707 CASSQVNNPGDGYTF TRBV14*01 TRBJ1-2*01 HLA-B*08:01 B2M MHCI QAKWRLQTL EBNA3A EBV PMID:34811538 tetramer-sort yes amplicon-seq effector memory T cells T1D T1D_4 chip0423_437417 PBMC +7708 CILPLAGGTSYGKLTF TRAV26-2*01 TRAJ52*01 CASSLGQAYEQYF TRBV7-8*01 TRBJ2-7*01 HLA-B*08:01 B2M MHCI FLRGRAYGL EBNA3A EBV PMID:34811538 tetramer-sort yes amplicon-seq effector T cells T1D T1D_6 chip0423_369965 PBMC +7710 CAVRRHQAGTALIF TRAV3*01 TRAJ15*01 HLA-A*01:01 B2M MHCI CTELKLSDY NP InfluenzaA PMID:34811538 tetramer-sort yes amplicon-seq transitional T cells between effector and memory populations healthy healthy_3 chip0423_228564 PBMC +7711 CASRANSLYEQYF TRBV2*01 TRBJ2-7*01 HLA-A*01:01 B2M MHCI HSNLNDATY NP InfluenzaA PMID:34811538 tetramer-sort yes amplicon-seq central memory T cells T1D T1D_6 chip0423_801668 PBMC +7712 CATEPWGtt?QGAQKLVF TRAV17*01 TRAJ54*01 CSAGLGIGEQFF TRBV29-1*01 TRBJ2-1*01 HLA-A*02:01 B2M MHCI ALWMRLLPL PREINS HomoSapiens PMID:34811538 tetramer-sort yes amplicon-seq Naive T cells healthy healthy_3 chip0423_746846 PBMC +7713 CASSSAGAGNQPQRF TRBV7-9*01 TRBJ1-5*01 HLA-B*08:01 B2M MHCI RAKFKQLL BZLF1 EBV PMID:34811538 tetramer-sort yes amplicon-seq effector memory T cells T1D T1D_4 chip0423_712781 PBMC +7714 CAVRPVRtg??gtATTKLIF TRAV21*01 TRAJ32*01 CAISEPGQGSPEAFF TRBV10-3*01 TRBJ1-1*01 HLA-A*02:01 B2M MHCI LLFNILGGWV NS4B HCV PMID:34811538 tetramer-sort yes amplicon-seq Naive T cells T1D T1D_4 chip0423_508367 PBMC +7715 CASSWLGDRYNSPLHF TRBV7-9*01 TRBJ1-6*01 HLA-B*08:01 B2M MHCI RAKFKQLL BZLF1 EBV PMID:34811538 tetramer-sort yes amplicon-seq effector T cells T1D T1D_5 chip0423_338099 PBMC +7716 CASSLGQAYEQYF TRBV7-8*01 TRBJ2-7*01 HLA-B*08:01 B2M MHCI FLRGRAYGL EBNA3A EBV PMID:34811538 tetramer-sort yes amplicon-seq effector memory T cells T1D T1D_6 chip0423_195379 PBMC +7717 SILPLAGRTSYGKPPL TRAV26-2*01 TRAJ52*01 CARRVDR??gVTYERYC TRBV2*01 TRBJ2-7*01 HLA-B*08:01 B2M MHCI FLRGRAYGL EBNA3A EBV PMID:34811538 tetramer-sort yes amplicon-seq effector T cells T1D T1D_6 chip0423_796314 PBMC +7718 CAARETSYDKVIF TRAV13-1*01 TRAJ50*01 CASSLVQVYEQYF TRBV7-9*01 TRBJ2-7*01 HLA-B*08:01 B2M MHCI RAKFKQLL BZLF1 EBV PMID:34811538 tetramer-sort yes amplicon-seq effector T cells T1D T1D_5 chip0423_493918 PBMC +7719 CASSYSSTGEYF TRBV6-2*01,TRBV6-3*01 TRBJ2-7*01 HLA-A*02:01 B2M MHCI YLLEMLWRL LMP1 EBV PMID:34811538 tetramer-sort yes amplicon-seq central memory T cells T1D T1D_4 chip0423_812088 PBMC +7720 CASSLHPW??gAAYNEQFF TRBV4-3*01 TRBJ2-1*01 HLA-B*08:01 B2M MHCI FLRGRAYGL EBNA3A EBV PMID:34811538 tetramer-sort yes amplicon-seq effector memory T cells T1D T1D_6 chip0423_703343 PBMC +7721 CAEMETSYDKVIF TRAV13-2*01 TRAJ50*01 CASSSLSGGAGNEQFF TRBV7-9*01 TRBJ2-1*01 HLA-B*08:01 B2M MHCI RAKFKQLL BZLF1 EBV PMID:34811538 tetramer-sort yes amplicon-seq effector memory T cells T1D T1D_5 chip0423_473387 PBMC +7722 CATAGVSGYSTLTF TRAV17*01 TRAJ11*01 CASSRQGGHYGYTF TRBV6-5*01,TRBV6-1*01 TRBJ1-2*01 HLA-A*02:01 B2M MHCI FLYALALLL LMP2 EBV PMID:34811538 tetramer-sort yes amplicon-seq transitional T cells between effector and memory populations T1D T1D_6 chip0423_420187 PBMC +7723 CASSLAVGEGPQHF TRBV7-9*01 TRBJ1-5*01 HLA-B*08:01 B2M MHCI RAKFKQLL BZLF1 EBV PMID:34811538 tetramer-sort yes amplicon-seq effector memory T cells T1D T1D_4 chip0423_418476 PBMC +7724 CAGRDTGNPFCF TRAV39*01 TRAJ49*01 CASSLATTGSYEQYF TRBV7-6*01 TRBJ2-7*01 HLA-A*02:01 B2M MHCI ALWMRLLPL PREINS HomoSapiens PMID:34811538 tetramer-sort yes amplicon-seq central memory T cells T1D T1D_4 chip0423_241896 PBMC +7726 CVVNGENARLMF TRAV12-1*01 TRAJ31*01 CASSEMWGAPLHF TRBV2*01 TRBJ1-6*01 HLA-A*01:01 B2M MHCI CTELKLSDY NP InfluenzaA PMID:34811538 tetramer-sort yes amplicon-seq transitional T cells between effector and memory populations healthy healthy_3 chip0423_90633 PBMC +7727 CILPLAGGTSYGKLTF TRAV26-2*01 TRAJ52*01 CASSLGQAYEQYF TRBV7-8*01 TRBJ2-7*01 HLA-B*08:01 B2M MHCI FLRGRAYGL EBNA3A EBV PMID:34811538 tetramer-sort yes amplicon-seq effector memory T cells T1D T1D_6 chip0423_302769 PBMC +7728 FIVSEGGGAVGLTF TRAV26-1*01 TRAJ45*01 CASSLAVGEGPQHF TRBV7-9*01 TRBJ1-5*01 HLA-B*08:01 B2M MHCI RAKFKQLL BZLF1 EBV PMID:34811538 tetramer-sort yes amplicon-seq effector memory T cells T1D T1D_4 chip0423_119073 PBMC +7729 CASSPTVGDGNTIYF TRBV7-6*01 TRBJ1-3*01 HLA-B*08:01 B2M MHCI RAKFKQLL BZLF1 EBV PMID:34811538 tetramer-sort yes amplicon-seq Naive T cells T1D T1D_5 chip0423_879769 PBMC +7730 CAMNDSWGKLQF TRAV12-3*01 TRAJ24*01 CASSPPESGEASF TRBV7-6*01 TRBJ1-1*01 HLA-A*01:01 B2M MHCI LTSLTILQLY G6PC2 HomoSapiens PMID:34811538 tetramer-sort yes amplicon-seq Naive T cells T1D T1D_6 chip0423_633682 PBMC +7731 CAVGSPNYGGSQGNLIF TRAV36/DV7*01 TRAJ42*01 CASSLEPHGYTF TRBV5-4*01 TRBJ1-2*01 HLA-A*01:01 B2M MHCI CTELKLSDY NP InfluenzaA PMID:34811538 tetramer-sort yes amplicon-seq transitional T cells between effector and memory populations healthy healthy_3 chip0423_673132 PBMC +7732 CAVKGGGFKTIF TRAV12-2*01 TRAJ9*01 HLA-B*08:01 B2M MHCI RAKFKQLL BZLF1 EBV PMID:34811538 tetramer-sort yes amplicon-seq effector memory T cells T1D T1D_4 chip0423_21270 PBMC +7733 CASTFFGLGEKLFF TRBV19*01 TRBJ1-4*01 HLA-B*08:01 B2M MHCI QAKWRLQTL EBNA3A EBV PMID:34811538 tetramer-sort yes amplicon-seq Naive T cells T1D T1D_4 chip0423_156300 PBMC +7734 CAATETSYDKVIF TRAV13-1*01 TRAJ50*01 CASSPPGRNEKLFF TRBV12-3*01,TRBV12-4*01 TRBJ1-4*01 HLA-B*08:01 B2M MHCI RAKFKQLL BZLF1 EBV PMID:34811538 tetramer-sort yes amplicon-seq effector memory T cells T1D T1D_5 chip0423_702745 PBMC +7735 CAASAGNQFYF TRAV29/DV5*01 TRAJ49*01 CASRPGQWYEQYF TRBV27*01 TRBJ2-7*01 HLA-A*01:01 B2M MHCI HSNLNDATY NP InfluenzaA PMID:34811538 tetramer-sort yes amplicon-seq Naive T cells healthy healthy_3 chip0423_692540 PBMC +7736 CASSLVMGNEQFF TRBV7-2*01 TRBJ2-1*01 HLA-B*08:01 B2M MHCI RAKFKQLL BZLF1 EBV PMID:34811538 tetramer-sort yes amplicon-seq effector memory T cells T1D T1D_5 chip0423_633032 PBMC +7738 CAMSTDSWGKLQS TRAV12-3*01 TRAJ24*01 CASRTSPFSPTDNYGYTF TRBV6-2*01,TRBV6-3*01 TRBJ1-2*01 HLA-A*02:01 B2M MHCI LLAGIGTVPI PGT HomoSapiens PMID:34811538 tetramer-sort yes amplicon-seq Naive T cells T1D T1D_6 chip0423_414075 PBMC +7739 CAVVPSGGYPKVTF TRAV8-3*01 TRAJ13*01 CAISELHSDGQETQYF TRBV10-3*01 TRBJ2-5*01 HLA-B*08:01 B2M MHCI RAKFKQLL BZLF1 EBV PMID:34811538 tetramer-sort yes amplicon-seq effector memory T cells T1D T1D_5 chip0423_226491 PBMC +7740 CASSWTGSYEQYF TRBV6-2*01,TRBV6-3*01 TRBJ2-7*01 HLA-A*02:01 B2M MHCI YVLDHLIVV BRLF1 EBV PMID:34811538 tetramer-sort yes amplicon-seq effector memory T cells healthy healthy_4 chip0423_795083 PBMC +7741 CATEGGSGYSTLTF TRAV17*01 TRAJ11*01 HLA-A*02:01 B2M MHCI FLYALALLL LMP2 EBV PMID:34811538 tetramer-sort yes amplicon-seq transitional T cells between effector and memory populations T1D T1D_6 chip0423_805119 PBMC +7742 CASSPPGSNEKLFF TRAV9-2*01 TRAJ5*01,TRAJ4*01 CASSPPGSNEKLFF TRBV12-3*01,TRBV12-4*01 TRBJ1-4*01 HLA-B*08:01 B2M MHCI RAKFKQLL BZLF1 EBV PMID:34811538 tetramer-sort yes amplicon-seq effector memory T cells T1D T1D_5 chip0423_343975 PBMC +7743 CAMSGDYKLSF TRAV12-3*01 TRAJ20*01 CASSYSVSVRGVDTEAFF TRBV6-2*01,TRBV6-3*01 TRBJ1-1*01 HLA-A*02:01 B2M MHCI LLAGIGTVPI PGT HomoSapiens PMID:34811538 tetramer-sort yes amplicon-seq Naive T cells T1D T1D_6 chip0423_727654 PBMC +7744 RIGVYRGRPRPLIF TRAV26-1*01 TRAJ42*01 CASSFSGFGELFF TRBV13*01 TRBJ2-2*01 HLA-A*02:01 B2M MHCI LLSLFSLWL ZNT8 HomoSapiens PMID:34811538 tetramer-sort yes amplicon-seq Naive T cells healthy healthy_3 chip0423_595457 PBMC +7745 CASSPPGANVLTF TRBV12-3*01,TRBV12-4*01 TRBJ2-6*01 HLA-B*08:01 B2M MHCI RAKFKQLL BZLF1 EBV PMID:34811538 tetramer-sort yes amplicon-seq effector memory T cells T1D T1D_5 chip0423_245472 PBMC +7746 CSVEGEGQIYNEQFF TRBV29-1*01 TRBJ2-1*01 HLA-A*02:01 B2M MHCI FLGKIWPSYK GAG HIV-1 PMID:34811538 tetramer-sort yes amplicon-seq Naive T cells T1D T1D_4 chip0423_2105 PBMC +7747 CILPLAGRPRYGQLTF TRAV26-2*01 TRAJ52*01 CASSQVRGGYEQYF TRBV3-1*01 TRBJ2-7*01 HLA-B*08:01 B2M MHCI FLRGRAYGL EBNA3A EBV PMID:34811538 tetramer-sort yes amplicon-seq effector memory T cells T1D T1D_6 chip0423_445380 PBMC +7748 CIVRVPRPTGPASKLTF TRAV26-1*01 TRAJ44*01 CASSQGQAYEQYF TRBV7-8*01 TRBJ2-7*01 HLA-B*08:01 B2M MHCI FLRGRAYGL EBNA3A EBV PMID:34811538 tetramer-sort yes amplicon-seq central memory T cells T1D T1D_4 chip0423_39387 PBMC +7749 CASSFRDRAQETQYF TRBV9*01 TRBJ2-5*01 HLA-A*02:01 B2M MHCI KMYAFTLES ZNT8 HomoSapiens PMID:34811538 tetramer-sort yes amplicon-seq Naive T cells T1D T1D_6 chip0423_46232 PBMC +7750 CSARTGQTYEQYF TRBV20-1*01 TRBJ2-7*01 HLA-A*02:01 B2M MHCI GILGFVFTL M1 InfluenzaA PMID:34811538 tetramer-sort yes amplicon-seq Naive T cells healthy healthy_3 chip0423_180669 PBMC +7751 CAVRHAGDLLPF TRAV3*01 TRAJ39*01 CASNLQGASNQPQHF TRBV28*01 TRBJ1-5*01 HLA-A*02:01 B2M MHCI ALGIGILTV MART1 HomoSapiens PMID:34811538 tetramer-sort yes amplicon-seq Naive T cells T1D T1D_4 chip0423_585897 PBMC +7752 CAMSLSNFGNEKLTF TRAV12-3*01 TRAJ48*01 HLA-A*02:01 B2M MHCI LLAGIGTVPI PGT HomoSapiens PMID:34811538 tetramer-sort yes amplicon-seq Naive T cells T1D T1D_4 chip0423_376496 PBMC +7753 CAASETSYDKVIF TRAV13-1*01 TRAJ50*01 CASSRLGVGTWDEQFF TRBV7-9*01 TRBJ2-1*01 HLA-B*08:01 B2M MHCI RAKFKQLL BZLF1 EBV PMID:34811538 tetramer-sort yes amplicon-seq effector T cells T1D T1D_5 chip0423_781427 PBMC +7754 CAVRDTTWDDKIIF TRAV3*01 TRAJ30*01 CASSLGGGEGASEQLF TRBV7-6*01 TRBJ2-1*01 HLA-B*08:01 B2M MHCI FLRGRAYGL EBNA3A EBV PMID:34811538 tetramer-sort yes amplicon-seq effector memory T cells T1D T1D_4 chip0423_704366 PBMC +7755 CASSWAGGEQYF TRBV12-3*01,TRBV12-4*01 TRBJ2-7*01 HLA-A*02:01 B2M MHCI ALAGIGILTV MART1 HomoSapiens PMID:34811538 tetramer-sort yes amplicon-seq Naive T cells T1D T1D_6 chip0423_415565 PBMC +7756 CAAAETSYDKVIF TRAV13-1*01 TRAJ50*01 CASQLAGGTGELFF TRBV24-1*01 TRBJ2-2*01 HLA-B*08:01 B2M MHCI RAKFKQLL BZLF1 EBV PMID:34811538 tetramer-sort yes amplicon-seq effector T cells T1D T1D_5 chip0423_817263 PBMC +7757 CASSQVNNPGDGYTF TRBV14*01 TRBJ1-2*01 HLA-B*08:01 B2M MHCI QAKWRLQTL EBNA3A EBV PMID:34811538 tetramer-sort yes amplicon-seq effector memory T cells T1D T1D_4 chip0423_558325 PBMC +7758 CAASETSYDKVIF TRAV13-1*01 TRAJ50*01 HLA-B*08:01 B2M MHCI RAKFKQLL BZLF1 EBV PMID:34811538 tetramer-sort yes amplicon-seq effector T cells T1D T1D_4 chip0423_503845 PBMC +7759 CILPLAGGTSYGKLTF TRAV26-2*01 TRAJ52*01 CASSLGQAYEQYF TRBV7-8*01 TRBJ2-7*01 HLA-B*08:01 B2M MHCI FLRGRAYGL EBNA3A EBV PMID:34811538 tetramer-sort yes amplicon-seq effector memory T cells T1D T1D_6 chip0423_365375 PBMC +7760 CAMSISNFGNEKLTF TRAV12-3*01 TRAJ48*01 CASSFSLAGAGNEQFF TRBV28*01 TRBJ2-1*01 HLA-A*02:01 B2M MHCI LLAGIGTVPI PGT HomoSapiens PMID:34811538 tetramer-sort yes amplicon-seq Naive T cells T1D T1D_6 chip0423_593252 PBMC +7761 CAVNAFSGGYNKLIF TRAV8-1*01 TRAJ4*01 CASSQEDSRWEQFF TRBV14*01 TRBJ2-1*01 HLA-A*02:01 B2M MHCI YLLEMLWRL LMP1 EBV PMID:34811538 tetramer-sort yes amplicon-seq effector memory T cells T1D T1D_4 chip0423_732908 PBMC +7762 CASSLPTFYEQYF TRBV7-2*01 TRBJ2-7*01 HLA-B*08:01 B2M MHCI RAKFKQLL BZLF1 EBV PMID:34811538 tetramer-sort yes amplicon-seq effector memory T cells T1D T1D_5 chip0423_627063 PBMC +7763 CASSDIREGQGEAFF TRBV10-2*01 TRBJ1-1*01 HLA-B*08:01 B2M MHCI QAKWRLQTL EBNA3A EBV PMID:34811538 tetramer-sort yes amplicon-seq effector memory T cells T1D T1D_6 chip0423_118071 PBMC +7765 CAMSLSNFGNEKLTF TRAV12-3*01 TRAJ48*01 CASSAQGEGEKLFF TRBV12-3*01,TRBV12-4*01 TRBJ1-4*01 HLA-A*02:01 B2M MHCI LLAGIGTVPI PGT HomoSapiens PMID:34811538 tetramer-sort yes amplicon-seq Naive T cells T1D T1D_6 chip0423_45069 PBMC +7766 CASSLTVLAGPNTEAFF TRBV7-3*01 TRBJ1-1*01 HLA-B*08:01 B2M MHCI RAKFKQLL BZLF1 EBV PMID:34811538 tetramer-sort yes amplicon-seq effector memory T cells T1D T1D_4 chip0423_305579 PBMC +7767 CASSQRANTGELFF TRBV4-1*01 TRBJ2-2*01 HLA-B*08:01 B2M MHCI CPLSKILL LMP2A EBV PMID:34811538 tetramer-sort yes amplicon-seq Naive T cells T1D T1D_6 chip0423_38242 PBMC +7768 CAAMETSYDKVIF TRAV13-1*01 TRAJ50*01 CASSVPATGGTGELFF TRBV9*01 TRBJ2-2*01 HLA-B*08:01 B2M MHCI RAKFKQLL BZLF1 EBV PMID:34811538 tetramer-sort yes amplicon-seq effector T cells T1D T1D_5 chip0423_414108 PBMC +7769 CASSLVTSQETQYF TRBV11-3*01 TRBJ2-5*01 HLA-A*02:01 B2M MHCI RGPGRAFVTI GP160 HIV-1 PMID:34811538 tetramer-sort yes amplicon-seq Naive T cells healthy healthy_3 chip0423_719457 PBMC +7770 CSVPSGPGYGYTF TRBV29-1*01 TRBJ1-2*01 HLA-A*02:01 B2M MHCI FLWSVFWLI IGRP HomoSapiens PMID:34811538 tetramer-sort yes amplicon-seq Naive T cells T1D T1D_6 chip0423_460288 PBMC +7771 CAMTLGQGAQKLVF TRAV12-3*01 TRAJ54*01 CSVDSQPIGETQYF TRBV29-1*01 TRBJ2-5*01 HLA-A*02:01 B2M MHCI LLAGIGTVPI PGT HomoSapiens PMID:34811538 tetramer-sort yes amplicon-seq Naive T cells healthy healthy_4 chip0423_404252 PBMC +7772 CASSGRSTGELFF TRBV19*01 TRBJ2-2*01 HLA-A*02:01 B2M MHCI GILGFVFTL M1 InfluenzaA PMID:34811538 tetramer-sort yes amplicon-seq transitional T cells between effector and memory populations healthy healthy_3 chip0423_846147 PBMC +7773 CAATETSYDKVIF TRAV13-1*01 TRAJ50*01 CASSPLGSNEKLFF TRBV7-9*01 TRBJ1-4*01 HLA-B*08:01 B2M MHCI RAKFKQLL BZLF1 EBV PMID:34811538 tetramer-sort yes amplicon-seq effector memory T cells T1D T1D_5 chip0423_527597 PBMC +7774 CASSVGVRNTEAFF TRBV19*01 TRBJ1-1*01 HLA-B*08:01 B2M MHCI MMIARFKM GAD2 HomoSapiens PMID:34811538 tetramer-sort yes amplicon-seq Naive T cells T1D T1D_5 chip0423_457235 PBMC +7775 CALSEAYGNQGGKLIF TRAV19*01 TRAJ23*01 CASSASGGPFNEQFF TRBV9*01 TRBJ2-1*01 HLA-B*08:01 B2M MHCI QAKWRLQTL EBNA3A EBV PMID:34811538 tetramer-sort yes amplicon-seq Naive T cells T1D T1D_4 chip0423_500532 PBMC +7776 CAIEGH*??gGANNLFF TRAV14/DV4*01 TRAJ36*01 CASSLSSGGRGEQYF TRBV4-1*01 TRBJ2-7*01 HLA-B*08:01 B2M MHCI RAKFKQLL BZLF1 EBV PMID:34811538 tetramer-sort yes amplicon-seq effector T cells T1D T1D_5 chip0423_265897 PBMC +7777 CAAAETSYDKVIF TRAV13-1*01 TRAJ50*01 HLA-B*08:01 B2M MHCI RAKFKQLL BZLF1 EBV PMID:34811538 tetramer-sort yes amplicon-seq effector memory T cells T1D T1D_5 chip0423_647007 PBMC +7778 CASLHTQPNTEAFF TRAV9-2*01 TRAJ40*01 CASLHTQTNTEAFF TRBV12-3*01,TRBV12-4*01 TRBJ1-1*01 HLA-B*08:01 B2M MHCI RAKFKQLL BZLF1 EBV PMID:34811538 tetramer-sort yes amplicon-seq effector memory T cells T1D T1D_5 chip0423_635873 PBMC +7779 CAVNTGFQKLVF TRAV12-2*01 TRAJ8*01 CSVKGGGYNEQFF TRBV29-1*01 TRBJ2-1*01 HLA-B*08:01 B2M MHCI ILKLQVFL IAPP HomoSapiens PMID:34811538 tetramer-sort yes amplicon-seq Naive T cells T1D T1D_6 chip0423_37438 PBMC +7781 CAVSVGL??gGVRYVVF TRAV14/DV4*01 TRAJ13*01 HLA-B*08:01 B2M MHCI RAKFKQLL BZLF1 EBV PMID:34811538 tetramer-sort yes amplicon-seq effector memory T cells T1D T1D_5 chip0423_718146 PBMC +7782 CAENSGYSTLTF TRAV13-2*01 TRAJ11*01 CASSPPRQETQYF TRBV18*01 TRBJ2-5*01 HLA-B*08:01 B2M MHCI HLKRNIVV GFAP HomoSapiens PMID:34811538 tetramer-sort yes amplicon-seq Naive T cells T1D T1D_4 chip0423_282251 PBMC +7783 CYAGRPVct?GHNRELVW TRAV1-1*01 TRAJ38*01 HLA-A*01:01 B2M MHCI VTDAAHLLI ZNT8 HomoSapiens PMID:34811538 tetramer-sort yes amplicon-seq Naive T cells T1D T1D_6 chip0423_255399 PBMC +7784 CASSQVNNPGDGYTF TRBV14*01 TRBJ1-2*01 HLA-B*08:01 B2M MHCI QAKWRLQTL EBNA3A EBV PMID:34811538 tetramer-sort yes amplicon-seq effector memory T cells T1D T1D_4 chip0423_633059 PBMC +7785 CAASETSYDKVIF TRAV13-1*01 TRAJ50*01 CASSLLGLEAYEQYF TRBV7-9*01 TRBJ2-7*01 HLA-B*08:01 B2M MHCI RAKFKQLL BZLF1 EBV PMID:34811538 tetramer-sort yes amplicon-seq effector memory T cells T1D T1D_5 chip0423_556411 PBMC +7786 CAVSDGEGAQKLVF TRAV8-6*01 TRAJ54*01 CASSLTVLAGPNTEAFF TRBV7-3*01 TRBJ1-1*01 HLA-B*08:01 B2M MHCI RAKFKQLL BZLF1 EBV PMID:34811538 tetramer-sort yes amplicon-seq effector memory T cells T1D T1D_4 chip0423_330194 PBMC +7787 CAATETSYDKVIF TRAV13-1*01 TRAJ50*01 CASSPLGIPANTEAFF TRBV7-9*01 TRBJ1-1*01 HLA-B*08:01 B2M MHCI RAKFKQLL BZLF1 EBV PMID:34811538 tetramer-sort yes amplicon-seq effector T cells T1D T1D_5 chip0423_325297 PBMC +7788 CAVGGASGGSYIPTF TRAV14/DV4*01 TRAJ6*01 CALDGRSSYNSPLHF TRBV30*01 TRBJ1-6*01 HLA-B*08:01 B2M MHCI SLKKGAAAL GAD2 HomoSapiens PMID:34811538 tetramer-sort yes amplicon-seq Naive T cells T1D T1D_5 chip0423_255213 PBMC +7789 CSAGRDGTNEKLFF TRBV29-1*01 TRBJ1-4*01 HLA-A*02:01 B2M MHCI GLCTLVAML BLMF1 EBV PMID:34811538 tetramer-sort yes amplicon-seq effector memory T cells T1D T1D_6 chip0423_792486 PBMC +7790 CVVNFDTDKLIF TRAV12-1*01 TRAJ34*01 CSGGQGPYEQYF TRBV29-1*01 TRBJ2-7*01 HLA-B*08:01 B2M MHCI RAKFKQLL BZLF1 EBV PMID:34811538 tetramer-sort yes amplicon-seq effector memory T cells T1D T1D_4 chip0423_439030 PBMC +7791 CAMGGSYIPTF TRAV12-3*01 TRAJ6*01 HLA-A*02:01 B2M MHCI LLAGIGTVPI PGT HomoSapiens PMID:34811538 tetramer-sort yes amplicon-seq Naive T cells T1D T1D_4 chip0423_280885 PBMC +7792 CAVSPGNTPLVF TRAV12-2*01 TRAJ29*01 CSASEGGYEQFF TRBV20-1*01 TRBJ2-1*01 HLA-A*02:01 B2M MHCI GIIYIIYKL P3A CoxsackievirusB PMID:34811538 tetramer-sort yes amplicon-seq central memory T cells T1D T1D_4 chip0423_118158 PBMC +7794 CVVRVDGQLLLF TRAV8-2*01 TRAJ16*01 CASSTTRAGTWPLHF TRBV7-9*01 TRBJ1-6*01 HLA-B*08:01 B2M MHCI RAKFKQLL BZLF1 EBV PMID:34811538 tetramer-sort yes amplicon-seq effector memory T cells healthy healthy_4 chip0423_297054 PBMC +7795 CAVNSGNTPLVF TRAV1-2*01 TRAJ29*01 CASSQVNNPGDGYTF TRBV14*01 TRBJ1-2*01 HLA-B*08:01 B2M MHCI QAKWRLQTL EBNA3A EBV PMID:34811538 tetramer-sort yes amplicon-seq effector memory T cells T1D T1D_4 chip0423_277724 PBMC +7796 CAATETSYDKVIF TRAV13-1*01 TRAJ50*01 CASGLLGQLNSPLHF TRBV12-5*01 TRBJ1-6*01 HLA-B*08:01 B2M MHCI RAKFKQLL BZLF1 EBV PMID:34811538 tetramer-sort yes amplicon-seq effector memory T cells T1D T1D_5 chip0423_593885 PBMC +7797 CAAIETSYDKVIF TRAV13-1*01 TRAJ50*01 CASSRQGGPNNEQFF TRBV7-9*01 TRBJ2-1*01 HLA-B*08:01 B2M MHCI RAKFKQLL BZLF1 EBV PMID:34811538 tetramer-sort yes amplicon-seq effector memory T cells T1D T1D_5 chip0423_60140 PBMC +7798 CALSESNTGNQFYF TRAV19*01 TRAJ49*01 CASSNTGFTDTQYF TRBV7-9*01 TRBJ2-3*01 HLA-A*02:01 B2M MHCI VVTGVLVYL ZNT8 HomoSapiens PMID:34811538 tetramer-sort yes amplicon-seq Naive T cells T1D T1D_4 chip0423_699021 PBMC +7799 CDLIVRct??ctACKLTF TRAV16*01 TRAJ44*01 HLA-A*02:01 B2M MHCI KIVALGINAV POL HCV PMID:34811538 tetramer-sort yes amplicon-seq Naive T cells healthy healthy_3 chip0423_577033 PBMC +7800 CAVRGTTWGVKTIF TRAV3*01 TRAJ30*01 CASSLGGGEGASEQFF TRBV7-6*01 TRBJ2-1*01 HLA-B*08:01 B2M MHCI FLRGRAYGL EBNA3A EBV PMID:34811538 tetramer-sort yes amplicon-seq effector memory T cells T1D T1D_4 chip0423_184417 PBMC +7802 YSARLERPPISSYEQYF TRBV20-1*01 TRBJ2-7*01 HLA-A*02:01 B2M MHCI LLSLFSLWL ZNT8 HomoSapiens PMID:34811538 tetramer-sort yes amplicon-seq Naive T cells T1D T1D_4 chip0423_855737 PBMC +7803 CASSFSGDSSGANVLTF TRBV12-3*01,TRBV12-4*01 TRBJ2-6*01 HLA-B*08:01 B2M MHCI RAKFKQLL BZLF1 EBV PMID:34811538 tetramer-sort yes amplicon-seq effector memory T cells T1D T1D_5 chip0423_431711 PBMC +7804 CASTSTETVDGYTF TRBV5-4*01 TRBJ1-2*01 HLA-B*08:01 B2M MHCI QAKWRLQTL EBNA3A EBV PMID:34811538 tetramer-sort yes amplicon-seq effector memory T cells T1D T1D_6 chip0423_63228 PBMC +7805 CAPSNFNKFYF TRAV13-1*01 TRAJ21*01 HLA-B*08:01 B2M MHCI RAKFKQLL BZLF1 EBV PMID:34811538 tetramer-sort yes amplicon-seq effector memory T cells T1D T1D_4 chip0423_856114 PBMC +7806 CASSQEVTDTQYF TRBV4-3*01 TRBJ2-3*01 HLA-A*02:01 B2M MHCI YLLEMLWRL LMP1 EBV PMID:34811538 tetramer-sort yes amplicon-seq effector memory T cells T1D T1D_4 chip0423_391321 PBMC +7807 CASSLGQAYEQYF TRBV7-8*01 TRBJ2-7*01 HLA-B*08:01 B2M MHCI FLRGRAYGL EBNA3A EBV PMID:34811538 tetramer-sort yes amplicon-seq central memory T cells T1D T1D_4 chip0423_564885 PBMC +7809 CAVSDGEGAQKLVF TRAV8-6*01 TRAJ54*01 CASSLTVLAGPNTETFF TRBV7-3*01 TRBJ1-1*01 HLA-B*08:01 B2M MHCI RAKFKQLL BZLF1 EBV PMID:34811538 tetramer-sort yes amplicon-seq effector memory T cells T1D T1D_4 chip0423_356641 PBMC +7810 CIVKASGGSSGLTF TRAV26-1*01 TRAJ45*01 CASSLAVGEGPQHF TRBV7-9*01 TRBJ1-5*01 HLA-B*08:01 B2M MHCI RAKFKQLL BZLF1 EBV PMID:34811538 tetramer-sort yes amplicon-seq effector T cells T1D T1D_4 chip0423_167541 PBMC +7811 CILPLAGGTSYGKLTF TRAV26-2*01 TRAJ52*01 CASSLGQAYEQYF TRBV7-8*01 TRBJ2-7*01 HLA-B*08:01 B2M MHCI FLRGRAYGL EBNA3A EBV PMID:34811538 tetramer-sort yes amplicon-seq effector T cells T1D T1D_6 chip0423_34020 PBMC +7812 CASSLSAGQLGSPLHF TRBV7-3*01 TRBJ1-6*01 HLA-B*08:01 B2M MHCI MGILKLQVF IAPP HomoSapiens PMID:34811538 tetramer-sort yes amplicon-seq Naive T cells T1D T1D_5 chip0423_778155 PBMC +7813 CSARDQTGNGYTF TRBV20-1*01 TRBJ1-2*01 HLA-A*02:01 B2M MHCI GLCTLVAML BLMF1 EBV PMID:34811538 tetramer-sort yes amplicon-seq effector memory T cells T1D T1D_4 chip0423_683305 PBMC +7814 CASGQEKTGGAFPTGELFF TRBV4-2*01 TRBJ2-2*01 HLA-A*01:01 B2M MHCI CTELKLSDY NP InfluenzaA PMID:34811538 tetramer-sort yes amplicon-seq Naive T cells T1D T1D_5 chip0423_497361 PBMC +7815 CAMRWSNFGNEKLTF TRAV12-3*01 TRAJ48*01 CSASQLENTEAFF TRBV20-1*01 TRBJ1-1*01 HLA-A*02:01 B2M MHCI LLAGIGTVPI PGT HomoSapiens PMID:34811538 tetramer-sort yes amplicon-seq Naive T cells T1D T1D_4 chip0423_429539 PBMC +7817 CASSEQGSNQPQHF TRBV12-3*01,TRBV12-4*01 TRBJ1-5*01 HLA-A*02:01 B2M MHCI MLYQHLLPL INSDRIP HomoSapiens PMID:34811538 tetramer-sort yes amplicon-seq Naive T cells T1D T1D_6 chip0423_367540 PBMC +7818 CSVVRPDRAGYTF TRBV29-1*01 TRBJ1-2*01 HLA-B*08:01 B2M MHCI ILKLQVFL IAPP HomoSapiens PMID:34811538 tetramer-sort yes amplicon-seq Naive T cells T1D T1D_5 chip0423_325291 PBMC +7819 CAVGSPNSGGGHGPLIF TRAV36/DV7*01 TRAJ42*01 CASGPTHGYTF TRBV12-5*01 TRBJ1-2*01 HLA-A*01:01 B2M MHCI CTELKLSDY NP InfluenzaA PMID:34811538 tetramer-sort yes amplicon-seq effector T cells healthy healthy_3 chip0423_723079 PBMC +7820 CAASAEARLMF TRAV29/DV5*01 TRAJ31*01 CASRVGREPTGELFF TRBV3-1*01 TRBJ2-2*01 HLA-B*08:01 B2M MHCI RAKFKQLL BZLF1 EBV PMID:34811538 tetramer-sort yes amplicon-seq effector memory T cells healthy healthy_4 chip0423_672094 PBMC +7821 CAVSSRGGNKLTF TRAV12-2*01 TRAJ10*01 CASTRIRQGLDEQYF TRBV2*01 TRBJ2-7*01 HLA-A*02:01 B2M MHCI LLAGIGTVPI PGT HomoSapiens PMID:34811538 tetramer-sort yes amplicon-seq Naive T cells T1D T1D_4 chip0423_562605 PBMC +7822 CAMSASNFGNEKLTF TRAV12-3*01 TRAJ48*01 CASSNWGPRVVNQPQHF TRBV5-6*01 TRBJ1-5*01 HLA-A*02:01 B2M MHCI LLAGIGTVPI PGT HomoSapiens PMID:34811538 tetramer-sort yes amplicon-seq Naive T cells T1D T1D_6 chip0423_225944 PBMC +7824 CASSVSGAPYEQYF TRBV9*01 TRBJ2-7*01 HLA-B*08:01 B2M MHCI FLRGRAYGL EBNA3A EBV PMID:34811538 tetramer-sort yes amplicon-seq effector memory T cells T1D T1D_6 chip0423_881031 PBMC +7825 CAVNSGNTPPVF TRAV1-2*01 TRAJ29*01 CASSQVNNPGDGYTF TRBV14*01 TRBJ1-2*01 HLA-B*08:01 B2M MHCI QAKWRLQTL EBNA3A EBV PMID:34811538 tetramer-sort yes amplicon-seq effector memory T cells T1D T1D_4 chip0423_494821 PBMC +7826 CSVGATTGNRLYNEQFF TRBV29-1*01 TRBJ2-1*01 HLA-A*02:01 B2M MHCI YVLDHLIVV BRLF1 EBV PMID:34811538 tetramer-sort yes amplicon-seq effector T cells healthy healthy_4 chip0423_63774 PBMC +7827 YILPLAGGTSYGKLTF TRAV26-2*01 TRAJ52*01 CASSLGQAYEQYF TRBV7-8*01 TRBJ2-7*01 HLA-B*08:01 B2M MHCI FLRGRAYGL EBNA3A EBV PMID:34811538 tetramer-sort yes amplicon-seq effector T cells T1D T1D_6 chip0423_41524 PBMC +7828 CASGRADRNGYTF TRBV12-3*01,TRBV12-4*01 TRBJ1-2*01 HLA-B*08:01 B2M MHCI RAKFKQLL BZLF1 EBV PMID:34811538 tetramer-sort yes amplicon-seq effector memory T cells T1D T1D_5 chip0423_241824 PBMC +7829 CASSLAVGEGPQHF TRBV7-9*01 TRBJ1-5*01 HLA-B*08:01 B2M MHCI RAKFKQLL BZLF1 EBV PMID:34811538 tetramer-sort yes amplicon-seq effector memory T cells T1D T1D_4 chip0423_232884 PBMC +7830 CASSLAVGEGPQHF TRBV7-9*01 TRBJ1-5*01 HLA-B*08:01 B2M MHCI RAKFKQLL BZLF1 EBV PMID:34811538 tetramer-sort yes amplicon-seq effector memory T cells T1D T1D_4 chip0423_42002 PBMC +7831 CAASSRVg?gGAGGLPF TRAV23/DV6*01 TRAJ45*01 CASSMQPg?gTENIQYF TRBV28*01 TRBJ2-4*01 HLA-A*02:01 B2M MHCI FLGKIWPSYK GAG HIV-1 PMID:34811538 tetramer-sort yes amplicon-seq central memory T cells healthy healthy_3 chip0423_619001 PBMC +7832 CAGAGSQGNLIF TRAV27*01 TRAJ42*01 CASSIRSSYEQYF TRBV19*01 TRBJ2-7*01 HLA-A*02:01 B2M MHCI GILGFVFTL M1 InfluenzaA PMID:34811538 tetramer-sort yes amplicon-seq transitional T cells between effector and memory populations T1D T1D_4 chip0423_268395 PBMC +7834 CVVNNGGFQKLVF TRAV12-1*01 TRAJ8*01 CASSLNHRSEAFF TRBV27*01 TRBJ1-1*01 HLA-B*08:01 B2M MHCI CPLSKILL LMP2A EBV PMID:34811538 tetramer-sort yes amplicon-seq Naive T cells T1D T1D_6 chip0423_508591 PBMC +7835 CASSEAGLTRYEQYF TRBV2*01 TRBJ2-7*01 HLA-B*08:01 B2M MHCI YLKDQQLL gp160 HIV-1 PMID:34811538 tetramer-sort yes amplicon-seq Naive T cells T1D T1D_5 chip0423_315571 PBMC +7836 CAVSAGAGAPQLVF TRAV8-6*01 TRAJ54*01 CASSLTVLAGPNTEAFF TRBV7-3*01 TRBJ1-1*01 HLA-B*08:01 B2M MHCI RAKFKQLL BZLF1 EBV PMID:34811538 tetramer-sort yes amplicon-seq effector memory T cells T1D T1D_4 chip0423_192584 PBMC +7838 CASPESGGGAAGLTF TRAV24*01 TRAJ45*01 CASSFGSGLVQQYF TRBV5-1*01 TRBJ2-7*01 HLA-B*08:01 B2M MHCI YAKWKLCSA ZNT8 HomoSapiens PMID:34811538 tetramer-sort yes amplicon-seq Naive T cells T1D T1D_5 chip0423_716890 PBMC +7839 CASSEVEGANQPQHF TRBV6-1*01 TRBJ1-5*01 HLA-A*01:01 B2M MHCI VTDAAHLLI ZNT8 HomoSapiens PMID:34811538 tetramer-sort yes amplicon-seq Naive T cells T1D T1D_6 chip0423_557808 PBMC +7840 CASSPLGSSNNSPLHF TRBV7-9*01 TRBJ1-6*01 HLA-B*08:01 B2M MHCI RAKFKQLL BZLF1 EBV PMID:34811538 tetramer-sort yes amplicon-seq effector memory T cells T1D T1D_5 chip0423_352492 PBMC +7841 CIVREGGGADGLTF TRAV26-1*01 TRAJ45*01 CASSLAVGEGPQHF TRBV7-9*01 TRBJ1-5*01 HLA-B*08:01 B2M MHCI RAKFKQLL BZLF1 EBV PMID:34811538 tetramer-sort yes amplicon-seq effector T cells T1D T1D_4 chip0423_157622 PBMC +7842 RAMRAPRTGASHLFF TRAV14/DV4*01 TRAJ36*01 CASSQAPGQRTGELFF TRBV4-1*01 TRBJ2-2*01 HLA-B*08:01 B2M MHCI RAKFKQLL BZLF1 EBV PMID:34811538 tetramer-sort yes amplicon-seq effector memory T cells healthy healthy_4 chip0423_209518 PBMC +7843 CASSIRGAYEQYS TRBV19*01 TRBJ2-7*01 HLA-A*02:01 B2M MHCI GILGFVFTL M1 InfluenzaA PMID:34811538 tetramer-sort yes amplicon-seq transitional T cells between effector and memory populations T1D T1D_6 chip0423_726452 PBMC +7844 CAMSLSNFGNEKLTF TRAV12-3*01 TRAJ48*01 CASSPTRTEENTGKLFF TRBV28*01 TRBJ2-2*01 HLA-A*02:01 B2M MHCI LLAGIGTVPI PGT HomoSapiens PMID:34811538 tetramer-sort yes amplicon-seq Naive T cells T1D T1D_6 chip0423_511473 PBMC +7845 CASSDIREGQGEAFF TRBV10-2*01 TRBJ1-1*01 HLA-B*08:01 B2M MHCI QAKWRLQTL EBNA3A EBV PMID:34811538 tetramer-sort yes amplicon-seq transitional T cells between effector and memory populations T1D T1D_6 chip0423_301817 PBMC +7846 CAMGKSNFGNEKLTF TRAV12-3*01 TRAJ48*01 CASSQDGLAGNNEQFF TRBV14*01 TRBJ2-1*01 HLA-A*02:01 B2M MHCI LLAGIGTVPI PGT HomoSapiens PMID:34811538 tetramer-sort yes amplicon-seq Naive T cells T1D T1D_6 chip0423_236767 PBMC +7847 PAGGKcc??aaGTLLF TRAV13-2*01 TRAJ42*01 CASRAHGSNQPQHF TRBV5-6*01 TRBJ1-5*01 HLA-A*01:01 B2M MHCI HSNLNDATY NP InfluenzaA PMID:34811538 tetramer-sort yes amplicon-seq Naive T cells T1D T1D_5 chip0423_111669 PBMC +7848 CAATPNDQ??aAAGNKLTF TRAV23/DV6*01 TRAJ17*01 CASSYSSTGEYF TRBV6-2*01,TRBV6-3*01 TRBJ2-7*01 HLA-A*01:01 B2M MHCI HSNLNDATY NP InfluenzaA PMID:34811538 tetramer-sort yes amplicon-seq central memory T cells T1D T1D_4 chip0423_762091 PBMC +7849 CASSLTVLAGPNTEAFF TRBV7-3*01 TRBJ1-1*01 HLA-B*08:01 B2M MHCI RAKFKQLL BZLF1 EBV PMID:34811538 tetramer-sort yes amplicon-seq effector memory T cells T1D T1D_4 chip0423_479706 PBMC +7850 CVMNIWRDSNYQLIW TRAV12-1*01 TRAJ33*01 CASSLAQSSWYNEQFF TRBV11-1*01 TRBJ2-1*01 HLA-A*01:01 B2M MHCI LTSLTILQLY G6PC2 HomoSapiens PMID:34811538 tetramer-sort yes amplicon-seq Naive T cells T1D T1D_5 chip0423_103303 PBMC +7851 CASSLNVGEGAGDTIYF TRBV7-6*01 TRBJ1-3*01 HLA-B*08:01 B2M MHCI RAKFKQLL BZLF1 EBV PMID:34811538 tetramer-sort yes amplicon-seq effector memory T cells healthy healthy_4 chip0423_714356 PBMC +7852 CAMREGESSASKIIF TRAV14/DV4*01 TRAJ3*01 CSGGEAYGYTF TRBV29-1*01 TRBJ1-2*01 HLA-B*08:01 B2M MHCI RAKFKQLL BZLF1 EBV PMID:34811538 tetramer-sort yes amplicon-seq effector T cells T1D T1D_5 chip0423_155905 PBMC +7853 CAASETSYDKVIF TRAV13-1*01 TRAJ50*01 CASSLGDSDGYEQFF TRBV12-3*01,TRBV12-4*01 TRBJ2-1*01 HLA-B*08:01 B2M MHCI RAKFKQLL BZLF1 EBV PMID:34811538 tetramer-sort yes amplicon-seq central memory T cells T1D T1D_5 chip0423_871081 PBMC +7854 CASSLAVGEGPQHF TRBV7-9*01 TRBJ1-5*01 HLA-B*08:01 B2M MHCI RAKFKQLL BZLF1 EBV PMID:34811538 tetramer-sort yes amplicon-seq effector memory T cells T1D T1D_4 chip0423_750885 PBMC +7855 CALTTYGQNFVF TRAV38-1*01 TRAJ26*01 CASSTTRAGTWPLHF TRBV7-9*01 TRBJ1-6*01 HLA-A*02:01 B2M MHCI YLLEMLWRL LMP1 EBV PMID:34811538 tetramer-sort yes amplicon-seq central memory T cells T1D T1D_4 chip0423_558230 PBMC +7856 CASSPGPGGYTF TRBV27*01 TRBJ1-2*01 HLA-B*08:01 B2M MHCI YLKTNLFL G6PC2 HomoSapiens PMID:34811538 tetramer-sort yes amplicon-seq Naive T cells T1D T1D_5 chip0423_179519 PBMC +7858 CASQGGSQGNLIF TRAV20*01 TRAJ42*01 CASSLGGQTETQYF TRBV13*01 TRBJ2-5*01 HLA-A*02:01 B2M MHCI TLLANVTAV VP6 RotavirusA PMID:34811538 tetramer-sort yes amplicon-seq transitional T cells between effector and memory populations T1D T1D_6 chip0423_878644 PBMC +7859 CAELLTQGGSEKLVF TRAV13-2*01 TRAJ57*01 HLA-A*01:01 B2M MHCI CTELKLSDY NP InfluenzaA PMID:34811538 tetramer-sort yes amplicon-seq Naive T cells T1D T1D_5 chip0423_835947 PBMC +7860 CASQLAGGTGELFF TRBV24-1*01 TRBJ2-2*01 HLA-B*08:01 B2M MHCI RAKFKQLL BZLF1 EBV PMID:34811538 tetramer-sort yes amplicon-seq effector T cells T1D T1D_5 chip0423_398857 PBMC +7861 CASSLAVGEGPQHF TRBV7-9*01 TRBJ1-5*01 HLA-B*08:01 B2M MHCI RAKFKQLL BZLF1 EBV PMID:34811538 tetramer-sort yes amplicon-seq effector memory T cells T1D T1D_4 chip0423_392642 PBMC +7862 CAEMETSYDKVIF TRAV13-2*01 TRAJ50*01 CASSSLSGGAGNEQFF TRBV7-9*01 TRBJ2-1*01 HLA-B*08:01 B2M MHCI RAKFKQLL BZLF1 EBV PMID:34811538 tetramer-sort yes amplicon-seq effector memory T cells T1D T1D_5 chip0423_854199 PBMC +7863 CAICNQGRKLII TRAV17*01 TRAJ23*01 HLA-A*02:01 B2M MHCI GIIYIIYKL P3A CoxsackievirusB PMID:34811538 tetramer-sort yes amplicon-seq Naive T cells T1D T1D_4 chip0423_722710 PBMC +7864 CAVRPSIa?tAGNMLTF TRAV3*01 TRAJ39*01 CSVGTGGTNEKLFF TRBV29-1*01 TRBJ1-4*01 HLA-A*02:01 B2M MHCI GLCTLVAML BLMF1 EBV PMID:34811538 tetramer-sort yes amplicon-seq effector T cells T1D T1D_6 chip0423_205044 PBMC +7865 CASSLTVLAGPNTEAFF TRBV7-3*01 TRBJ1-1*01 HLA-B*08:01 B2M MHCI RAKFKQLL BZLF1 EBV PMID:34811538 tetramer-sort yes amplicon-seq effector memory T cells T1D T1D_4 chip0423_751137 PBMC +7866 CIVREGGGADGLTF TRAV26-1*01 TRAJ45*01 HLA-B*08:01 B2M MHCI RAKFKQLL BZLF1 EBV PMID:34811538 tetramer-sort yes amplicon-seq effector T cells T1D T1D_4 chip0423_706131 PBMC +7867 CASSLSPDAAYGYTF TRBV27*01 TRBJ1-2*01 HLA-A*02:01 B2M MHCI ALGIGILTV MART1 HomoSapiens PMID:34811538 tetramer-sort yes amplicon-seq Naive T cells T1D T1D_6 chip0423_464254 PBMC +7868 CAVNDYKLSF TRAV21*01 TRAJ20*01 CAVRSRGDNDEQYF TRBV10-3*01 TRBJ2-7*01 HLA-B*08:01 B2M MHCI NLIFKWIL G6PC2 HomoSapiens PMID:34811538 tetramer-sort yes amplicon-seq Naive T cells T1D T1D_6 chip0423_449649 PBMC +7869 CILPLAGGTSYGKLTF TRAV26-2*01 TRAJ52*01 CASSLGQAYEQYF TRBV7-8*01 TRBJ2-7*01 HLA-B*08:01 B2M MHCI FLRGRAYGL EBNA3A EBV PMID:34811538 tetramer-sort yes amplicon-seq effector memory T cells T1D T1D_6 chip0423_411254 PBMC +7870 CASQLAGGTGELFF TRBV24-1*01 TRBJ2-2*01 HLA-B*08:01 B2M MHCI RAKFKQLL BZLF1 EBV PMID:34811538 tetramer-sort yes amplicon-seq effector T cells T1D T1D_5 chip0423_14510 PBMC +7872 CAFMPGNQFYF TRAV24*01 TRAJ49*01 CTSSLMGGELFF TRBV19*01 TRBJ2-2*01 HLA-B*08:01 B2M MHCI RPIIRPATL NP InfluenzaA PMID:34811538 tetramer-sort yes amplicon-seq transitional T cells between effector and memory populations T1D T1D_6 chip0423_229388 PBMC +7873 CILPLAGGTSYGKLTF TRAV26-2*01 TRAJ52*01 CASSLGQAYEQYF TRBV7-8*01 TRBJ2-7*01 HLA-B*08:01 B2M MHCI FLRGRAYGL EBNA3A EBV PMID:34811538 tetramer-sort yes amplicon-seq central memory T cells T1D T1D_6 chip0423_35255 PBMC +7874 CAGSSGAGDNEQFF TRBV6-5*01 TRBJ2-1*01 HLA-A*02:01 B2M MHCI LLAGIGTVPI PGT HomoSapiens PMID:34811538 tetramer-sort yes amplicon-seq Naive T cells T1D T1D_4 chip0423_809340 PBMC +7875 CAVNTGGFKTIF TRAV12-2*01 TRAJ9*01 CASRVGSGSLFF TRBV9*01 TRBJ2-2*01 HLA-A*02:01 B2M MHCI ALAGIGILTV MART1 HomoSapiens PMID:34811538 tetramer-sort yes amplicon-seq Naive T cells T1D T1D_6 chip0423_428530 PBMC +7876 CAVKFQGAQKLVF TRAV12-2*01 TRAJ54*01 CASSPWKGEETQYF TRBV4-1*01 TRBJ2-5*01 HLA-B*08:01 B2M MHCI WMRLLPLL INS HomoSapiens PMID:34811538 tetramer-sort yes amplicon-seq Naive T cells T1D T1D_6 chip0423_427158 PBMC +7877 CASSLYSGLNTEAFF TRBV7-8*01 TRBJ1-1*01 HLA-B*08:01 B2M MHCI YAKWKLCSA ZNT8 HomoSapiens PMID:34811538 tetramer-sort yes amplicon-seq Naive T cells T1D T1D_6 chip0423_163756 PBMC +7878 CVVFPAPGGYNKLIF TRAV12-1*01 TRAJ4*01 CASSLLGAATEAFF TRBV5-1*01 TRBJ1-1*01 HLA-B*08:01 B2M MHCI YAKWKLCSA ZNT8 HomoSapiens PMID:34811538 tetramer-sort yes amplicon-seq Naive T cells T1D T1D_5 chip0423_852643 PBMC +7879 CAATETSYDKVIF TRAV13-1*01 TRAJ50*01 CASIDLGGEVSYNEQFF TRBV11-1*01 TRBJ2-1*01 HLA-B*08:01 B2M MHCI RAKFKQLL BZLF1 EBV PMID:34811538 tetramer-sort yes amplicon-seq effector T cells T1D T1D_5 chip0423_357128 PBMC +7880 CILPLAGGTSYGKLTF TRAV26-2*01 TRAJ52*01 CASSLGQAYEQYF TRBV7-8*01 TRBJ2-7*01 HLA-B*08:01 B2M MHCI FLRGRAYGL EBNA3A EBV PMID:34811538 tetramer-sort yes amplicon-seq effector memory T cells T1D T1D_6 chip0423_45606 PBMC +7881 CASSQINNPGDGYTF TRBV14*01 TRBJ1-2*01 HLA-B*08:01 B2M MHCI QAKWRLQTL EBNA3A EBV PMID:34811538 tetramer-sort yes amplicon-seq effector memory T cells T1D T1D_4 chip0423_47070 PBMC +7882 CATVPAAGGTSYGKLTF TRAV17*01 TRAJ52*01 CASSLLADAYEQYF TRBV5-1*01 TRBJ2-7*01 HLA-A*02:01 B2M MHCI ALGIGILTV MART1 HomoSapiens PMID:34811538 tetramer-sort yes amplicon-seq Naive T cells healthy healthy_3 chip0423_386287 PBMC +7883 CSAGRDGTNEKLFF TRBV29-1*01 TRBJ1-4*01 HLA-A*02:01 B2M MHCI GLCTLVAML BLMF1 EBV PMID:34811538 tetramer-sort yes amplicon-seq effector memory T cells T1D T1D_6 chip0423_307848 PBMC +7884 CAVGQDTDKLIF TRAV12-2*01 TRAJ34*01 CASSLGEGYTF TRBV7-9*01 TRBJ1-2*01 HLA-A*02:01 B2M MHCI LLAGIGTVPI PGT HomoSapiens PMID:34811538 tetramer-sort yes amplicon-seq Naive T cells T1D T1D_4 chip0423_880012 PBMC +7885 CLVGDEGNTPLVF TRAV4*01 TRAJ29*01 HLA-A*01:01 B2M MHCI LTSLTILQLY G6PC2 HomoSapiens PMID:34811538 tetramer-sort yes amplicon-seq Naive T cells T1D T1D_4 chip0423_760461 PBMC +7886 CAVREGAAGRYQLTF TRAV8-4*01 TRAJ28*01 CASSSPSERNSPLHF TRBV7-8*01 TRBJ1-6*01 HLA-A*02:01 B2M MHCI CLGGLLTMV LMP2A EBV PMID:34811538 tetramer-sort yes amplicon-seq Naive T cells healthy healthy_3 chip0423_497953 PBMC +7887 CATGGGSGYSTLTF TRAV17*01 TRAJ11*01 CASSPQGGNYGYTF TRBV6-1*01 TRBJ1-2*01 HLA-A*02:01 B2M MHCI FLYALALLL LMP2 EBV PMID:34811538 tetramer-sort yes amplicon-seq effector memory T cells T1D T1D_4 chip0423_260639 PBMC +7888 CAEMETSYDKVIF TRAV13-2*01 TRAJ50*01 CASRSLSGGAGNAQFF TRBV7-9*01 TRBJ2-1*01 HLA-B*08:01 B2M MHCI RAKFKQLL BZLF1 EBV PMID:34811538 tetramer-sort yes amplicon-seq effector memory T cells T1D T1D_5 chip0423_464124 PBMC +7889 RIVREGGGADGLTF TRAV26-1*01 TRAJ45*01 CASSLAVGEGPQHF TRBV7-9*01 TRBJ1-5*01 HLA-B*08:01 B2M MHCI RAKFKQLL BZLF1 EBV PMID:34811538 tetramer-sort yes amplicon-seq effector memory T cells T1D T1D_4 chip0423_319273 PBMC +7891 CASTPVEGTEAFF TRBV12-3*01,TRBV12-4*01 TRBJ1-1*01 HLA-A*02:01 B2M MHCI LLAGIGTVPI PGT HomoSapiens PMID:34811538 tetramer-sort yes amplicon-seq Naive T cells T1D T1D_6 chip0423_466424 PBMC +7893 CASSQVNNPGDGYTF TRBV14*01 TRBJ1-2*01 HLA-B*08:01 B2M MHCI QAKWRLQTL EBNA3A EBV PMID:34811538 tetramer-sort yes amplicon-seq effector memory T cells T1D T1D_4 chip0423_848009 PBMC +7895 CAADAWETSGSRLTF TRAV25*01 TRAJ10*01 CASSFIAGDPYNEQFF TRBV6-2*01,TRBV6-3*01 TRBJ2-1*01 HLA-A*01:01 B2M MHCI GSHLVEALY INS HomoSapiens PMID:34811538 tetramer-sort yes amplicon-seq Naive T cells T1D T1D_6 chip0423_396408 PBMC +7896 CVVNQAGTALIF TRAV12-1*01 TRAJ15*01 CASKSRSTEAFF TRBV12-3*01,TRBV12-4*01 TRBJ1-1*01 HLA-B*08:01 B2M MHCI YAYAKWKL ZNT8 HomoSapiens PMID:34811538 tetramer-sort yes amplicon-seq Naive T cells T1D T1D_6 chip0423_860630 PBMC +7897 CAAAETSYDKVIF TRAV13-1*01 TRAJ50*01 CASQLAGGTGELFF TRBV24-1*01 TRBJ2-2*01 HLA-B*08:01 B2M MHCI RAKFKQLL BZLF1 EBV PMID:34811538 tetramer-sort yes amplicon-seq transitional T cells between effector and memory populations T1D T1D_5 chip0423_44240 PBMC +7898 CAMAFKGGF TRAV12-3*01 TRAJ27*01 CASSLHPW??gAAYNEQFF TRBV4-3*01 TRBJ2-1*01 HLA-B*08:01 B2M MHCI RAKFKQLL BZLF1 EBV PMID:34811538 tetramer-sort yes amplicon-seq effector T cells T1D T1D_4 chip0423_38188 PBMC +7899 CASQLAGGTGELFF TRBV24-1*01 TRBJ2-2*01 HLA-B*08:01 B2M MHCI RAKFKQLL BZLF1 EBV PMID:34811538 tetramer-sort yes amplicon-seq effector T cells T1D T1D_5 chip0423_708814 PBMC +7900 CAALETSYDKVIF TRAV13-1*01 TRAJ50*01 CASSPDGSTGELFF TRBV12-3*01,TRBV12-4*01 TRBJ2-2*01 HLA-B*08:01 B2M MHCI RAKFKQLL BZLF1 EBV PMID:34811538 tetramer-sort yes amplicon-seq effector memory T cells T1D T1D_5 chip0423_366706 PBMC +7901 CAVSDGERAQKLVF TRAV8-6*01 TRAJ54*01 CASSLTVLAGPNTEAFF TRBV7-3*01 TRBJ1-1*01 HLA-B*08:01 B2M MHCI RAKFKQLL BZLF1 EBV PMID:34811538 tetramer-sort yes amplicon-seq effector memory T cells T1D T1D_4 chip0423_51702 PBMC +7902 CAVEDQGRSYNTDKLIF TRAV2*01 TRAJ34*01 CASQLAGGTGELFF TRBV24-1*01 TRBJ2-2*01 HLA-B*08:01 B2M MHCI RAKFKQLL BZLF1 EBV PMID:34811538 tetramer-sort yes amplicon-seq effector T cells T1D T1D_5 chip0423_642504 PBMC +7903 CAMSAGGYNKLIF TRAV12-3*01 TRAJ4*01 CARSASPSSYAQYF TRBV6-1*01 TRBJ2-7*01 HLA-A*02:01 B2M MHCI LLAGIGTVPI PGT HomoSapiens PMID:34811538 tetramer-sort yes amplicon-seq Naive T cells T1D T1D_6 chip0423_185731 PBMC +7904 CAASKIEga?GGADGLTF TRAV23/DV6*01 TRAJ45*01 CASSLGQAYEQYF TRBV7-8*01 TRBJ2-7*01 HLA-B*08:01 B2M MHCI FLRGRAYGL EBNA3A EBV PMID:34811538 tetramer-sort yes amplicon-seq effector memory T cells T1D T1D_6 chip0423_111562 PBMC +7905 CAVGRI*ETSGSRLTF TRAV21*01,TRAV36/DV7*01 TRAJ10*01,TRAJ27*01 CASSTRLAGGYEQYF TRBV13*01 TRBJ2-7*01 HLA-A*02:01 B2M MHCI ALWMRLLPL PREINS HomoSapiens PMID:34811538 tetramer-sort yes amplicon-seq Naive T cells healthy healthy_3 chip0423_371741 PBMC +7906 CAMREGDSSFGNEKLTF TRAV14/DV4*01 TRAJ48*01 HLA-A*02:01 B2M MHCI GILGFVFTL M1 InfluenzaA PMID:34811538 tetramer-sort yes amplicon-seq transitional T cells between effector and memory populations T1D T1D_4 chip0423_65386 PBMC +7907 CASSIAAAATNEKLFF TRBV19*01 TRBJ1-4*01 HLA-A*01:01 B2M MHCI VTDAAHLLI ZNT8 HomoSapiens PMID:34811538 tetramer-sort yes amplicon-seq Naive T cells T1D T1D_5 chip0423_40182 PBMC +7908 CAISQGQDPLYGYTF TRBV10-3*01 TRBJ1-2*01 HLA-A*01:01 B2M MHCI VTDAAHLLI ZNT8 HomoSapiens PMID:34811538 tetramer-sort yes amplicon-seq Naive T cells T1D T1D_5 chip0423_799201 PBMC +7909 CAMSLANFGNEKLTF TRAV12-3*01 TRAJ48*01 CSAQKGTGGPGTRELFF TRBV20-1*01 TRBJ2-2*01 HLA-A*02:01 B2M MHCI LLAGIGTVPI PGT HomoSapiens PMID:34811538 tetramer-sort yes amplicon-seq Naive T cells T1D T1D_6 chip0423_472839 PBMC +7910 CAMSLSNFGNEKLTF TRAV12-3*01 TRAJ48*01 CASGCVSIGQPKTCSYGYTF TRBV6-2*01,TRBV6-3*01 TRBJ1-2*01 HLA-A*02:01 B2M MHCI LLAGIGTVPI PGT HomoSapiens PMID:34811538 tetramer-sort yes amplicon-seq Naive T cells T1D T1D_6 chip0423_449246 PBMC +7911 CASSQLGGVYNEQFF TRBV7-9*01 TRBJ2-1*01 HLA-B*08:01 B2M MHCI RAKFKQLL BZLF1 EBV PMID:34811538 tetramer-sort yes amplicon-seq effector memory T cells T1D T1D_5 chip0423_165060 PBMC +7912 CAGARRDTGFQKLVF TRAV27*01 TRAJ8*01 CASSEVGAGYEQYF TRBV2*01 TRBJ2-7*01 HLA-A*02:01 B2M MHCI CLGGLLTMV LMP2A EBV PMID:34811538 tetramer-sort yes amplicon-seq Naive T cells T1D T1D_6 chip0423_807946 PBMC +7913 CAAALGGYRALTF TRAV13-1*01 TRAJ11*01 CSVEDPLGGQGTYEQYF TRBV29-1*01 TRBJ2-7*01 HLA-B*08:01 B2M MHCI YAKWKLCSA ZNT8 HomoSapiens PMID:34811538 tetramer-sort yes amplicon-seq Naive T cells T1D T1D_6 chip0423_626448 PBMC +7914 CILPLAGGTSYGKLTF TRAV26-2*01 TRAJ52*01 CASSLGQAYEQYF TRBV7-8*01 TRBJ2-7*01 HLA-B*08:01 B2M MHCI FLRGRAYGL EBNA3A EBV PMID:34811538 tetramer-sort yes amplicon-seq effector memory T cells T1D T1D_6 chip0423_613197 PBMC +7916 CAASETSYDKVIF TRAV13-1*01 TRAJ50*01 CATSWTGGPGEQYF TRBV12-3*01,TRBV12-4*01 TRBJ2-7*01 HLA-B*08:01 B2M MHCI RAKFKQLL BZLF1 EBV PMID:34811538 tetramer-sort yes amplicon-seq effector memory T cells T1D T1D_5 chip0423_668094 PBMC +7917 CALLNDYKLSF TRAV38-1*01 TRAJ20*01 CASSFTPGHWQQFF TRBV5-1*01 TRBJ2-1*01 HLA-A*02:01 B2M MHCI VIVMLTPLV PTPRN HomoSapiens PMID:34811538 tetramer-sort yes amplicon-seq Naive T cells T1D T1D_4 chip0423_184235 PBMC +7918 CASSLAVGEGPQHF TRBV7-9*01 TRBJ1-5*01 HLA-B*08:01 B2M MHCI RAKFKQLL BZLF1 EBV PMID:34811538 tetramer-sort yes amplicon-seq effector T cells T1D T1D_4 chip0423_156288 PBMC +7919 CAARETSYDKVIF TRAV13-1*01 TRAJ50*01 CASTSLGARDEQYF TRBV7-9*01 TRBJ2-7*01 HLA-B*08:01 B2M MHCI RAKFKQLL BZLF1 EBV PMID:34811538 tetramer-sort yes amplicon-seq effector memory T cells T1D T1D_5 chip0423_479133 PBMC +7920 CASLSDRVEKLFF TRBV25-1*01 TRBJ1-4*01 HLA-A*02:01 B2M MHCI GILGFVFTL M1 InfluenzaA PMID:34811538 tetramer-sort yes amplicon-seq central memory T cells healthy healthy_4 chip0423_450605 PBMC +7921 CAEPTGFPPLVF TRAV13-2*01 TRAJ8*01 CASSQRDSPLHF TRBV4-3*01 TRBJ1-6*01 HLA-B*08:01 B2M MHCI HLKRNIVV GFAP HomoSapiens PMID:34811538 tetramer-sort yes amplicon-seq Naive T cells T1D T1D_6 chip0423_28102 PBMC +7922 CAVNQGEKLIF TRAV12-2*01 TRAJ23*01 HLA-A*02:01 B2M MHCI LLAGIGTVPI PGT HomoSapiens PMID:34811538 tetramer-sort yes amplicon-seq Naive T cells healthy healthy_3 chip0423_869868 PBMC +7924 CAVRGYGQNFVF TRAV21*01 TRAJ26*01 CASSLGGQYNEQFF TRBV12-3*01,TRBV12-4*01 TRBJ2-1*01 HLA-A*02:01 B2M MHCI ELAEYLYNI GAD65 HomoSapiens PMID:34811538 tetramer-sort yes amplicon-seq central memory T cells healthy healthy_3 chip0423_589708 PBMC +7925 CAMSISNFGNEKLTF TRAV12-3*01 TRAJ48*01 CASGHLGQKTYEQYF TRBV12-5*01 TRBJ2-7*01 HLA-B*08:01 B2M MHCI RAKFKQLL BZLF1 EBV PMID:34811538 tetramer-sort yes amplicon-seq central memory T cells T1D T1D_5 chip0423_441217 PBMC +7926 CASSLLQATTDTQYF TRBV12-3*01,TRBV12-4*01 TRBJ2-3*01 HLA-B*08:01 B2M MHCI QAKWRLQTL EBNA3A EBV PMID:34811538 tetramer-sort yes amplicon-seq Naive T cells T1D T1D_4 chip0423_350341 PBMC +7927 CASSYGWGGSYNEQFF TRBV6-2*01,TRBV6-3*01 TRBJ2-1*01 HLA-A*01:01 B2M MHCI LVSDGGPNLY PB1 InfluenzaA PMID:34811538 tetramer-sort yes amplicon-seq effector memory T cells healthy healthy_3 chip0423_846994 PBMC +7928 CASSIAGREEAFF TRBV19*01 TRBJ1-1*01 HLA-A*01:01 B2M MHCI PTEKGANEY ZNT8 HomoSapiens PMID:34811538 tetramer-sort yes amplicon-seq Naive T cells T1D T1D_5 chip0423_728602 PBMC +7929 CAPASGGSYIPTF TRAV24*01 TRAJ6*01 CASCRDGTYEQYF TRBV10-3*01 TRBJ2-7*01 HLA-A*01:01 B2M MHCI CTELKLSDY NP InfluenzaA PMID:34811538 tetramer-sort yes amplicon-seq transitional T cells between effector and memory populations healthy healthy_3 chip0423_183763 PBMC +7930 CDSSQMGg?gVYTAQLF TRBV7-9*01 TRBJ2-1*01 HLA-B*08:01 B2M MHCI RAKFKQLL BZLF1 EBV PMID:34811538 tetramer-sort yes amplicon-seq effector T cells T1D T1D_5 chip0423_740718 PBMC +7931 CASSSSYEQYF TRBV7-9*01 TRBJ2-7*01 HLA-A*02:01 B2M MHCI ELAEYLYNI GAD65 HomoSapiens PMID:34811538 tetramer-sort yes amplicon-seq Naive T cells T1D T1D_4 chip0423_446085 PBMC +7932 CASSLAVGEGPQHF TRBV7-9*01 TRBJ1-5*01 HLA-B*08:01 B2M MHCI RAKFKQLL BZLF1 EBV PMID:34811538 tetramer-sort yes amplicon-seq effector T cells T1D T1D_4 chip0423_327359 PBMC +7933 CASSQLL*cc??gg*HNEKLFF TRBV4-3*01 TRBJ1-4*01 HLA-B*08:01 B2M MHCI RAKFKQLL BZLF1 EBV PMID:34811538 tetramer-sort yes amplicon-seq transitional T cells between effector and memory populations healthy healthy_5 chip0423_646369 PBMC +7934 SALTYEEFtg??gcGHHGYLIF TRAV19*01 TRAJ42*01 CASSEYRASYNEQFF TRBV10-2*01 TRBJ2-1*01 HLA-A*02:01 B2M MHCI LVGPTPVNI POL HIV-1 PMID:34811538 tetramer-sort yes amplicon-seq Naive T cells T1D T1D_6 chip0423_566227 PBMC +7935 CAQIFFR??tCYYLLIF TRAV19*01 TRAJ4*01 HLA-A*01:01 B2M MHCI CTELKLSDY NP InfluenzaA PMID:34811538 tetramer-sort yes amplicon-seq transitional T cells between effector and memory populations healthy healthy_3 chip0423_371773 PBMC +7936 CAISELHSDGQETQYF TRBV10-3*01 TRBJ2-5*01 HLA-B*08:01 B2M MHCI RAKFKQLL BZLF1 EBV PMID:34811538 tetramer-sort yes amplicon-seq effector T cells T1D T1D_5 chip0423_200227 PBMC +7937 CILPLAGGARYGQLTF TRAV26-2*01 TRAJ52*01 CASSSGQAYEQYF TRBV7-8*01 TRBJ2-7*01 HLA-B*08:01 B2M MHCI FLRGRAYGL EBNA3A EBV PMID:34811538 tetramer-sort yes amplicon-seq effector memory T cells healthy healthy_4 chip0423_166062 PBMC +7938 CAPFNFNKFYF TRAV13-1*01 TRAJ21*01 CASSLRGGQETQYF TRBV7-3*01 TRBJ2-5*01 HLA-B*08:01 B2M MHCI RAKFKQLL BZLF1 EBV PMID:34811538 tetramer-sort yes amplicon-seq effector memory T cells T1D T1D_4 chip0423_707302 PBMC +7939 CAMREPYSGGGADGLTF TRAV14/DV4*01 TRAJ45*01 LCQQRWRgc??caADQPQHF TRBV9*01 TRBJ1-5*01 HLA-B*08:01 B2M MHCI QAKWRLQTL EBNA3A EBV PMID:34811538 tetramer-sort yes amplicon-seq Naive T cells T1D T1D_5 chip0423_616737 PBMC +7940 CASSLAVGEGPQHF TRBV7-9*01 TRBJ1-5*01 HLA-B*08:01 B2M MHCI RAKFKQLL BZLF1 EBV PMID:34811538 tetramer-sort yes amplicon-seq effector T cells T1D T1D_4 chip0423_209050 PBMC +7941 CVVS*IMga?GSQRNLIF TRAV10*01 TRAJ42*01 CASSLGGGEGASEQFF TRBV7-6*01 TRBJ2-1*01 HLA-B*08:01 B2M MHCI FLRGRAYGL EBNA3A EBV PMID:34811538 tetramer-sort yes amplicon-seq effector memory T cells T1D T1D_4 chip0423_451483 PBMC +7942 CAVSNRDDKIIF TRAV12-2*01 TRAJ30*01 CASSLGGNEQYF TRBV5-1*01 TRBJ2-7*01 HLA-A*02:01 B2M MHCI RGPGRAFVTI GP160 HIV-1 PMID:34811538 tetramer-sort yes amplicon-seq Naive T cells T1D T1D_6 chip0423_130539 PBMC +7943 CASQGGSQGNLIF TRAV20*01 TRAJ42*01 HLA-A*02:01 B2M MHCI TLLANVTAV VP6 RotavirusA PMID:34811538 tetramer-sort yes amplicon-seq transitional T cells between effector and memory populations T1D T1D_6 chip0423_866200 PBMC +7944 CAMRGSPcg?GGGNNLTF TRAV14/DV4*01 TRAJ10*01 HLA-A*01:01 B2M MHCI CTELKLSDY NP InfluenzaA PMID:34811538 tetramer-sort yes amplicon-seq Naive T cells T1D T1D_6 chip0423_767128 PBMC +7945 CAMRVGK??gGFRYVYL TRAV14/DV4*01 TRAJ13*01 CASSDIREGQGEAFF TRBV10-2*01 TRBJ1-1*01 HLA-B*08:01 B2M MHCI QAKWRLQTL EBNA3A EBV PMID:34811538 tetramer-sort yes amplicon-seq transitional T cells between effector and memory populations T1D T1D_6 chip0423_591730 PBMC +7946 CAVSPSR??cSACPLTF TRAV36/DV7*01 TRAJ44*01 CASSGKALWDSSYEQYF TRBV5-4*01 TRBJ2-7*01 HLA-A*02:01 B2M MHCI LLNATDIAV GP160 HIV-1 PMID:34811538 tetramer-sort yes amplicon-seq Naive T cells T1D T1D_6 chip0423_555523 PBMC +7947 CIVRVVCac?GTASPLTF TRAV26-1*01 TRAJ44*01 CASSLAVGEGPQHF TRBV7-9*01 TRBJ1-5*01 HLA-B*08:01 B2M MHCI RAKFKQLL BZLF1 EBV PMID:34811538 tetramer-sort yes amplicon-seq effector memory T cells T1D T1D_4 chip0423_505253 PBMC +7949 CILPLAGGTSYGKLTF TRAV26-2*01 TRAJ52*01 CASSLGQAYEQYF TRBV7-8*01 TRBJ2-7*01 HLA-B*08:01 B2M MHCI FLRGRAYGL EBNA3A EBV PMID:34811538 tetramer-sort yes amplicon-seq effector memory T cells T1D T1D_6 chip0423_50281 PBMC +7950 CVVALSNFGNEKLTF TRAV12-1*01 TRAJ48*01 HLA-A*02:01 B2M MHCI LLAGIGTVPI PGT HomoSapiens PMID:34811538 tetramer-sort yes amplicon-seq Naive T cells T1D T1D_6 chip0423_377540 PBMC +7951 CASSLLGQIPYEQYF TRBV13*01 TRBJ2-7*01 HLA-B*08:01 B2M MHCI HARIKLKV PTPRN HomoSapiens PMID:34811538 tetramer-sort yes amplicon-seq Naive T cells T1D T1D_6 chip0423_44831 PBMC +7952 CASTPGNTIYF TRBV19*01 TRBJ1-3*01 HLA-A*02:01 B2M MHCI LLAGIGTVPI PGT HomoSapiens PMID:34811538 tetramer-sort yes amplicon-seq Naive T cells T1D T1D_4 chip0423_699158 PBMC +7954 CASSLLRSYNSPLHF TRAV9-1*01 TRAJ11*01 CASSLLSSYNSPLHF TRBV12-3*01,TRBV12-4*01 TRBJ1-6*01 HLA-B*08:01 B2M MHCI RAKFKQLL BZLF1 EBV PMID:34811538 tetramer-sort yes amplicon-seq effector memory T cells T1D T1D_5 chip0423_407692 PBMC +7955 CAAVETSYDKVIF TRAV13-1*01 TRAJ50*01 CASSYLGTGGSYEQYF TRBV7-9*01 TRBJ2-7*01 HLA-B*08:01 B2M MHCI RAKFKQLL BZLF1 EBV PMID:34811538 tetramer-sort yes amplicon-seq effector memory T cells T1D T1D_5 chip0423_388048 PBMC +7956 CASSSSLIAGEKAFF TRBV7-3*01 TRBJ1-1*01 HLA-A*02:01 B2M MHCI LLAGIGTVPI PGT HomoSapiens PMID:34811538 tetramer-sort yes amplicon-seq Naive T cells T1D T1D_6 chip0423_313738 PBMC +7957 CAATETSYDKVIF TRAV13-1*01 TRAJ50*01 CASSPPGRNEKLFF TRBV12-3*01,TRBV12-4*01 TRBJ1-4*01 HLA-B*08:01 B2M MHCI RAKFKQLL BZLF1 EBV PMID:34811538 tetramer-sort yes amplicon-seq effector memory T cells T1D T1D_5 chip0423_247998 PBMC +7958 CAVKTLYQLTF TRAV8-1*01 TRAJ28*01 CASSQGYSGAGETQYF TRBV4-2*01 TRBJ2-5*01 HLA-A*02:01 B2M MHCI YVLDHLIVV BRLF1 EBV PMID:34811538 tetramer-sort yes amplicon-seq transitional T cells between effector and memory populations T1D T1D_6 chip0423_146404 PBMC +7960 CASSLALAGITDTQYF TRBV4-3*01 TRBJ2-3*01 HLA-A*02:01 B2M MHCI ALAGIGILTV MART1 HomoSapiens PMID:34811538 tetramer-sort yes amplicon-seq Naive T cells healthy healthy_4 chip0423_465905 PBMC +7961 CASSLTQGRYNEQFF TRBV7-9*01 TRBJ2-1*01 HLA-B*08:01 B2M MHCI RAKFKQLL BZLF1 EBV PMID:34811538 tetramer-sort yes amplicon-seq effector memory T cells T1D T1D_5 chip0423_790235 PBMC +7962 CANSLGQAYEQYF TRBV7-8*01 TRBJ2-7*01 HLA-B*08:01 B2M MHCI FLRGRAYGL EBNA3A EBV PMID:34811538 tetramer-sort yes amplicon-seq effector memory T cells T1D T1D_6 chip0423_186145 PBMC +7963 CAAAETSYDKVIF TRAV13-1*01 TRAJ50*01 CASQLAGGTGELFF TRBV24-1*01 TRBJ2-2*01 HLA-B*08:01 B2M MHCI RAKFKQLL BZLF1 EBV PMID:34811538 tetramer-sort yes amplicon-seq transitional T cells between effector and memory populations T1D T1D_5 chip0423_11894 PBMC +7964 CIAREGGGADGLAF TRAV26-1*01 TRAJ45*01 CASSLAVGEGPQHF TRBV7-9*01 TRBJ1-5*01 HLA-B*08:01 B2M MHCI RAKFKQLL BZLF1 EBV PMID:34811538 tetramer-sort yes amplicon-seq effector T cells T1D T1D_4 chip0423_532796 PBMC +7965 CILPLAGGTSYGKLTF TRAV26-2*01 TRAJ52*01 CASSLGQAYEQYF TRBV7-8*01 TRBJ2-7*01 HLA-B*08:01 B2M MHCI FLRGRAYGL EBNA3A EBV PMID:34811538 tetramer-sort yes amplicon-seq effector memory T cells T1D T1D_6 chip0423_760079 PBMC +7966 CILPLAGGTSYGKLTF TRAV26-2*01 TRAJ52*01 CASSLGQAYEQYF TRBV7-8*01 TRBJ2-7*01 HLA-B*08:01 B2M MHCI FLRGRAYGL EBNA3A EBV PMID:34811538 tetramer-sort yes amplicon-seq effector memory T cells T1D T1D_6 chip0423_46835 PBMC +7967 CASSSLSGGAGNEQFF TRBV7-9*01 TRBJ2-1*01 HLA-B*08:01 B2M MHCI RAKFKQLL BZLF1 EBV PMID:34811538 tetramer-sort yes amplicon-seq effector memory T cells T1D T1D_5 chip0423_707387 PBMC +7968 CAASMGYGNKLVF TRAV13-1*01 TRAJ47*01 HLA-A*01:01 B2M MHCI CTELKLSDY NP InfluenzaA PMID:34811538 tetramer-sort yes amplicon-seq transitional T cells between effector and memory populations healthy healthy_3 chip0423_623700 PBMC +7969 CAMRLSNFGNEKLTF TRAV12-3*01 TRAJ48*01 HLA-A*02:01 B2M MHCI LLAGIGTVPI PGT HomoSapiens PMID:34811538 tetramer-sort yes amplicon-seq Naive T cells T1D T1D_4 chip0423_209849 PBMC +7970 CAVSDGEGAQKLVF TRAV8-6*01 TRAJ54*01 CASSLTVLAGPNTEAFF TRBV7-3*01 TRBJ1-1*01 HLA-B*08:01 B2M MHCI RAKFKQLL BZLF1 EBV PMID:34811538 tetramer-sort yes amplicon-seq effector memory T cells T1D T1D_4 chip0423_208535 PBMC +7971 CASRANSLYEQYF TRBV2*01 TRBJ2-7*01 HLA-A*01:01 B2M MHCI HSNLNDATY NP InfluenzaA PMID:34811538 tetramer-sort yes amplicon-seq central memory T cells T1D T1D_6 chip0423_839519 PBMC +7972 CIVSARGGAAGLSF TRAV26-1*01 TRAJ45*01 CASSLAVGEGPRHF TRBV7-9*01 TRBJ1-5*01 HLA-B*08:01 B2M MHCI RAKFKQLL BZLF1 EBV PMID:34811538 tetramer-sort yes amplicon-seq effector memory T cells T1D T1D_4 chip0423_139913 PBMC +7973 CAVRQStg??caGNKLTF TRAV8-1*01 TRAJ17*01 HLA-A*01:01 B2M MHCI CTELKLSDY NP InfluenzaA PMID:34811538 tetramer-sort yes amplicon-seq transitional T cells between effector and memory populations healthy healthy_3 chip0423_79290 PBMC +7974 CIVREGGGADGLTF TRAV26-1*01 TRAJ45*01 CASSLAVGEGPQHF TRBV7-9*01 TRBJ1-5*01 HLA-B*08:01 B2M MHCI RAKFKQLL BZLF1 EBV PMID:34811538 tetramer-sort yes amplicon-seq effector T cells T1D T1D_4 chip0423_21979 PBMC +7975 CAGFPWAAGNKLTF TRAV25*01 TRAJ17*01 HLA-A*01:01 B2M MHCI CTELKLSDY NP InfluenzaA PMID:34811538 tetramer-sort yes amplicon-seq transitional T cells between effector and memory populations T1D T1D_5 chip0423_491353 PBMC +7976 CAAGETSYDKVIF TRAV13-1*01 TRAJ50*01 CASSLLGSQNTEAFF TRBV7-9*01 TRBJ1-1*01 HLA-B*08:01 B2M MHCI RAKFKQLL BZLF1 EBV PMID:34811538 tetramer-sort yes amplicon-seq effector memory T cells T1D T1D_5 chip0423_110694 PBMC +7977 CAVEEQGRSYNTVMLIF TRAV2*01 TRAJ34*01 CASSSLSGGAGNEQFF TRBV7-9*01 TRBJ2-1*01 HLA-B*08:01 B2M MHCI RAKFKQLL BZLF1 EBV PMID:34811538 tetramer-sort yes amplicon-seq effector memory T cells T1D T1D_5 chip0423_744884 PBMC +7978 CASGLVGQETGELFF TRBV12-5*01 TRBJ2-2*01 HLA-B*08:01 B2M MHCI RAKFKQLL BZLF1 EBV PMID:34811538 tetramer-sort yes amplicon-seq effector T cells T1D T1D_5 chip0423_659113 PBMC +7979 CILPLAGGTSYGKLTF TRAV26-2*01 TRAJ52*01 CASSLGQAYEQYF TRBV7-8*01 TRBJ2-7*01 HLA-B*08:01 B2M MHCI FLRGRAYGL EBNA3A EBV PMID:34811538 tetramer-sort yes amplicon-seq effector T cells T1D T1D_6 chip0423_150408 PBMC +7980 CAMSISNFGNEKLTF TRAV12-3*01 TRAJ48*01 CASSLVVPGDYGYTF TRBV7-2*01 TRBJ1-2*01 HLA-A*02:01 B2M MHCI LLAGIGTVPI PGT HomoSapiens PMID:34811538 tetramer-sort yes amplicon-seq Naive T cells healthy healthy_3 chip0423_830374 PBMC +7981 SAAFRgg?PTEAFF TRAV24*01,TRAV7*01 TRAJ40*01 CSVPGPAEAFF TRBV29-1*01 TRBJ1-1*01 HLA-A*02:01 B2M MHCI CLGGLLTMV LMP2A EBV PMID:34811538 tetramer-sort yes amplicon-seq Naive T cells healthy healthy_3 chip0423_217415 PBMC +7982 CVVHVDRLMF TRAV12-1*01 TRAJ31*01 CASRAGTGHAAFF TRBV9*01 TRBJ1-1*01 HLA-A*01:01 B2M MHCI LTSLTILQLY G6PC2 HomoSapiens PMID:34811538 tetramer-sort yes amplicon-seq Naive T cells T1D T1D_5 chip0423_579867 PBMC +7983 CAMSLSNFGNEKLTF TRAV12-3*01 TRAJ48*01 CASSHLRag??gaAFYGYTF TRBV4-1*01 TRBJ1-2*01 HLA-A*02:01 B2M MHCI LLAGIGTVPI PGT HomoSapiens PMID:34811538 tetramer-sort yes amplicon-seq Naive T cells T1D T1D_4 chip0423_596151 PBMC +7984 CAMRDPRTGAHNLFF TRAV14/DV4*01 TRAJ36*01 CASSLVGDSGELFF TRBV7-6*01 TRBJ2-2*01 HLA-B*08:01 B2M MHCI RAKFKQLL BZLF1 EBV PMID:34811538 tetramer-sort yes amplicon-seq effector T cells T1D T1D_5 chip0423_450056 PBMC +7985 CAAAATDLRF TRAV27*01 TRAJ43*01 HLA-A*01:01 B2M MHCI VSATAGTTVY GAD2 HomoSapiens PMID:34811538 tetramer-sort yes amplicon-seq Naive T cells T1D T1D_6 chip0423_233808 PBMC +7986 CASRGQLGGNQPQHF TRBV28*01 TRBJ1-5*01 HLA-A*02:01 B2M MHCI YVLDHLIVV BRLF1 EBV PMID:34811538 tetramer-sort yes amplicon-seq central memory T cells T1D T1D_4 chip0423_860292 PBMC +7987 RAMSVPDFGLGRFTF TRAV12-3*01 TRAJ48*01 CASSHPDSYLEKLFF TRBV7-2*01 TRBJ1-4*01 HLA-A*02:01 B2M MHCI LLAGIGTVPI PGT HomoSapiens PMID:34811538 tetramer-sort yes amplicon-seq Naive T cells T1D T1D_6 chip0423_681403 PBMC +7988 CAVNQGGGYQKVTF TRAV12-2*01 TRAJ13*01 CASSYSPNTEAFF TRBV6-5*01 TRBJ1-1*01 HLA-A*02:01 B2M MHCI LLAGIGTVPI PGT HomoSapiens PMID:34811538 tetramer-sort yes amplicon-seq Naive T cells T1D T1D_6 chip0423_581710 PBMC +7989 CAMTLSNFGNEKLTF TRAV12-3*01 TRAJ48*01 CAISESTGVRYNEQFF TRBV10-3*01 TRBJ2-1*01 HLA-A*02:01 B2M MHCI LLAGIGTVPI PGT HomoSapiens PMID:34811538 tetramer-sort yes amplicon-seq Naive T cells T1D T1D_6 chip0423_366029 PBMC +7990 CAVSWDTGFQKLVF TRAV8-6*01 TRAJ8*01 CASSLGTSASTDTQYF TRBV7-9*01 TRBJ2-3*01 HLA-B*08:01 B2M MHCI LWMRLLPL INS HomoSapiens PMID:34811538 tetramer-sort yes amplicon-seq transitional T cells between effector and memory populations T1D T1D_4 chip0423_210364 PBMC +7991 CASSLGQAYEQYF TRBV7-8*01 TRBJ2-7*01 HLA-B*08:01 B2M MHCI FLRGRAYGL EBNA3A EBV PMID:34811538 tetramer-sort yes amplicon-seq effector memory T cells T1D T1D_6 chip0423_437909 PBMC +7992 CAVAGSFKTIF TRAV12-2*01 TRAJ9*01 CASSLGDRAYEQYF TRBV7-8*01 TRBJ2-7*01 HLA-A*02:01 B2M MHCI ALGIGILTV MART1 HomoSapiens PMID:34811538 tetramer-sort yes amplicon-seq Naive T cells T1D T1D_6 chip0423_125539 PBMC +7993 CAAQETSYDKVIF TRAV13-1*01 TRAJ50*01 CASTQVDRPNYGYTF TRBV7-9*01 TRBJ1-2*01 HLA-B*08:01 B2M MHCI RAKFKQLL BZLF1 EBV PMID:34811538 tetramer-sort yes amplicon-seq effector memory T cells T1D T1D_5 chip0423_487527 PBMC +7994 CVVSISNFGNEKLTF TRAV12-1*01 TRAJ48*01 CSARDFRTGGSAEAFF TRBV20-1*01 TRBJ1-1*01 HLA-A*02:01 B2M MHCI LLAGIGTVPI PGT HomoSapiens PMID:34811538 tetramer-sort yes amplicon-seq Naive T cells T1D T1D_4 chip0423_215772 PBMC +7995 CAVNIWGSQGNLIF TRAV12-2*01 TRAJ42*01 CASSPPFNNEQFF TRBV28*01 TRBJ2-1*01 HLA-A*02:01 B2M MHCI ALAGIGILTV MART1 HomoSapiens PMID:34811538 tetramer-sort yes amplicon-seq Naive T cells healthy healthy_4 chip0423_540130 PBMC +7996 CASSPKKEKNEQFF TRBV4-3*01 TRBJ2-1*01 HLA-A*02:01 B2M MHCI GILGFVFTL M1 InfluenzaA PMID:34811538 tetramer-sort yes amplicon-seq transitional T cells between effector and memory populations T1D T1D_6 chip0423_495554 PBMC +7997 CASSYLQGMNSPLHF TRBV7-2*01 TRBJ1-6*01 HLA-B*08:01 B2M MHCI RAKFKQLL BZLF1 EBV PMID:34811538 tetramer-sort yes amplicon-seq effector T cells T1D T1D_5 chip0423_420842 PBMC +7998 CILPLAGGTSYGKLTF TRAV26-2*01 TRAJ52*01 CASSLGQAYEQYF TRBV7-8*01 TRBJ2-7*01 HLA-B*08:01 B2M MHCI FLRGRAYGL EBNA3A EBV PMID:34811538 tetramer-sort yes amplicon-seq effector memory T cells T1D T1D_6 chip0423_821860 PBMC +7999 CASSLGQANTGELFF TRBV5-6*01 TRBJ2-2*01 HLA-A*02:01 B2M MHCI MVWESGCTV PTPRN HomoSapiens PMID:34811538 tetramer-sort yes amplicon-seq Naive T cells T1D T1D_6 chip0423_440717 PBMC +8000 CSARDETGNGYTF TRBV20-1*01 TRBJ1-2*01 HLA-A*02:01 B2M MHCI GLCTLVAML BLMF1 EBV PMID:34811538 tetramer-sort yes amplicon-seq effector T cells healthy healthy_4 chip0423_42282 PBMC +8001 CAVLPSNDYKLSF TRAV21*01 TRAJ20*01 CASIGKTTSTDTQYF TRBV19*01 TRBJ2-3*01 HLA-A*01:01 B2M MHCI CTELKLSDY NP InfluenzaA PMID:34811538 tetramer-sort yes amplicon-seq effector T cells healthy healthy_3 chip0423_841327 PBMC +8002 CAVSDGEGAQKLVF TRAV8-6*01 TRAJ54*01 CASSLTVLAGPNTEAFF TRBV7-3*01 TRBJ1-1*01 HLA-B*08:01 B2M MHCI RAKFKQLL BZLF1 EBV PMID:34811538 tetramer-sort yes amplicon-seq effector memory T cells T1D T1D_4 chip0423_70747 PBMC +8003 CIVRVVCac?GTAS*LTF TRAV26-1*01 TRAJ44*01 HLA-B*08:01 B2M MHCI RAKFKQLL BZLF1 EBV PMID:34811538 tetramer-sort yes amplicon-seq effector memory T cells T1D T1D_4 chip0423_643479 PBMC +8004 CASSQDGYGGDQPQHF TRBV4-1*01 TRBJ1-5*01 HLA-A*01:01 B2M MHCI CTELKLSDY NP InfluenzaA PMID:34811538 tetramer-sort yes amplicon-seq transitional T cells between effector and memory populations healthy healthy_3 chip0423_425509 PBMC +8005 CAASETSYDKVIF TRAV13-1*01 TRAJ50*01 CASSSLRQGTGNTIYF TRBV7-9*01 TRBJ1-3*01 HLA-B*08:01 B2M MHCI RAKFKQLL BZLF1 EBV PMID:34811538 tetramer-sort yes amplicon-seq effector T cells T1D T1D_5 chip0423_380181 PBMC +8006 CASSFTGSSGNTIYF TRBV12-3*01,TRBV12-4*01 TRBJ1-3*01 HLA-B*08:01 B2M MHCI RAKFKQLL BZLF1 EBV PMID:34811538 tetramer-sort yes amplicon-seq effector memory T cells T1D T1D_5 chip0423_828195 PBMC +8007 CASSSGQAYEQYF TRBV7-8*01 TRBJ2-7*01 HLA-B*08:01 B2M MHCI FLRGRAYGL EBNA3A EBV PMID:34811538 tetramer-sort yes amplicon-seq effector memory T cells healthy healthy_4 chip0423_613859 PBMC +8008 CIVRVEFGNEKLTF TRAV26-1*01 TRAJ48*01 CASSPQAGDEQFF TRBV7-9*01 TRBJ2-1*01 HLA-A*02:01 B2M MHCI LLAGIGTVPI PGT HomoSapiens PMID:34811538 tetramer-sort yes amplicon-seq Naive T cells T1D T1D_4 chip0423_335660 PBMC +8009 CAGPEYGNKLVS TRAV25*01 TRAJ47*01 CASSSRGVDRDDGYTF TRBV12-3*01,TRBV12-4*01 TRBJ1-2*01 HLA-B*08:01 B2M MHCI YAYAKWKL ZNT8 HomoSapiens PMID:34811538 tetramer-sort yes amplicon-seq Naive T cells T1D T1D_6 chip0423_801325 PBMC +8010 CAVNIAHSGGGADGLTF TRAV12-2*01 TRAJ45*01 CASSLGQAYEQYF TRBV7-8*01 TRBJ2-7*01 HLA-B*08:01 B2M MHCI FLRGRAYGL EBNA3A EBV PMID:34811538 tetramer-sort yes amplicon-seq effector memory T cells T1D T1D_6 chip0423_682110 PBMC +8011 CSVGTGGTNEKLFF TRBV29-1*01 TRBJ1-4*01 HLA-A*02:01 B2M MHCI GLCTLVAML BLMF1 EBV PMID:34811538 tetramer-sort yes amplicon-seq effector memory T cells healthy healthy_3 chip0423_485776 PBMC +8012 CAVKEGGKLIF TRAV8-1*01 TRAJ23*01 CASSQMSDTQYF TRBV6-2*01,TRBV6-3*01 TRBJ2-3*01 HLA-A*02:01 B2M MHCI YVLDHLIVV BRLF1 EBV PMID:34811538 tetramer-sort yes amplicon-seq effector memory T cells healthy healthy_3 chip0423_75489 PBMC +8013 CIVREGGGAAGLPF TRAV26-1*01 TRAJ45*01 CASSLAVGEGPQHF TRBV7-9*01 TRBJ1-5*01 HLA-B*08:01 B2M MHCI RAKFKQLL BZLF1 EBV PMID:34811538 tetramer-sort yes amplicon-seq effector T cells T1D T1D_4 chip0423_860329 PBMC +8014 CAASETSYDKVIF TRAV13-1*01 TRAJ50*01 CASSNQNLRTGSHYGYTF TRBV7-8*01 TRBJ1-2*01 HLA-B*08:01 B2M MHCI RAKFKQLL BZLF1 EBV PMID:34811538 tetramer-sort yes amplicon-seq effector memory T cells T1D T1D_5 chip0423_39466 PBMC +8015 CAAKETSYDKVIF TRAV13-1*01 TRAJ50*01 CASSLLGGTDTGELFF TRBV7-9*01 TRBJ2-2*01 HLA-B*08:01 B2M MHCI RAKFKQLL BZLF1 EBV PMID:34811538 tetramer-sort yes amplicon-seq effector T cells T1D T1D_5 chip0423_345463 PBMC +8016 CATPCG??gEEKLFF TRBV19*01 TRBJ1-4*01 HLA-A*02:01 B2M MHCI YVLDHLIVV BRLF1 EBV PMID:34811538 tetramer-sort yes amplicon-seq effector memory T cells healthy healthy_3 chip0423_324482 PBMC +8017 CASSPPGRNEKLFF TRBV12-3*01,TRBV12-4*01 TRBJ1-4*01 HLA-B*08:01 B2M MHCI RAKFKQLL BZLF1 EBV PMID:34811538 tetramer-sort yes amplicon-seq effector memory T cells T1D T1D_5 chip0423_725846 PBMC +8018 CASSQVNNPGDGYTF TRBV14*01 TRBJ1-2*01 HLA-B*08:01 B2M MHCI QAKWRLQTL EBNA3A EBV PMID:34811538 tetramer-sort yes amplicon-seq effector memory T cells T1D T1D_4 chip0423_355199 PBMC +8019 CVGLNDYKLSF TRAV12-1*01 TRAJ20*01 CASSLLGSSYEQYF TRBV28*01 TRBJ2-7*01 HLA-A*01:01 B2M MHCI LTSLTILQLY G6PC2 HomoSapiens PMID:34811538 tetramer-sort yes amplicon-seq Naive T cells T1D T1D_5 chip0423_81411 PBMC +8020 CAMTLSNFGNEKLTF TRAV12-3*01 TRAJ48*01 CASSYSSGVMDTEAFF TRBV6-2*01,TRBV6-3*01 TRBJ1-1*01 HLA-A*02:01 B2M MHCI LLAGIGTVPI PGT HomoSapiens PMID:34811538 tetramer-sort yes amplicon-seq Naive T cells healthy healthy_4 chip0423_745576 PBMC +8021 CASSLLGQYTGELFF TRBV7-2*01 TRBJ2-2*01 HLA-B*08:01 B2M MHCI RAKFKQLL BZLF1 EBV PMID:34811538 tetramer-sort yes amplicon-seq effector memory T cells T1D T1D_5 chip0423_198657 PBMC +8022 CSGLSGNTIYF TRBV29-1*01 TRBJ1-3*01 HLA-A*02:01 B2M MHCI LLAGIGTVPI PGT HomoSapiens PMID:34811538 tetramer-sort yes amplicon-seq Naive T cells healthy healthy_3 chip0423_93559 PBMC +8023 CASSLVRGNEQYF TRBV7-8*01 TRBJ2-7*01 HLA-B*08:01 B2M MHCI RAKFKQLL BZLF1 EBV PMID:34811538 tetramer-sort yes amplicon-seq effector T cells T1D T1D_5 chip0423_772730 PBMC +8024 SSVTAGEGAPKLVF TRAV8-4*01,TRAV8-6*01 TRAJ54*01 HLA-B*08:01 B2M MHCI RAKFKQLL BZLF1 EBV PMID:34811538 tetramer-sort yes amplicon-seq effector memory T cells T1D T1D_4 chip0423_538567 PBMC +8025 CASSIYSINEQFF TRBV19*01 TRBJ2-1*01 HLA-A*02:01 B2M MHCI GILGFVFTL M1 InfluenzaA PMID:34811538 tetramer-sort yes amplicon-seq transitional T cells between effector and memory populations T1D T1D_6 chip0423_384872 PBMC +8026 CAVPFNR??cTASKLTF TRAV8-1*01 TRAJ44*01 CASSLEGQASSYEQYF TRBV5-1*01 TRBJ2-7*01 HLA-A*02:01 B2M MHCI CLGGLLTMV LMP2A EBV PMID:34811538 tetramer-sort yes amplicon-seq effector memory T cells T1D T1D_4 chip0423_343352 PBMC +8027 CASSFPSLHTQYF TRBV12-3*01,TRBV12-4*01 TRBJ2-3*01 HLA-B*08:01 B2M MHCI RAKFKQLL BZLF1 EBV PMID:34811538 tetramer-sort yes amplicon-seq effector memory T cells T1D T1D_5 chip0423_314084 PBMC +8028 CSARGGVRETQYF TRBV20-1*01 TRBJ2-5*01 HLA-B*08:01 B2M MHCI WPTVRERM Nef HIV-1 PMID:34811538 tetramer-sort yes amplicon-seq Naive T cells T1D T1D_6 chip0423_167219 PBMC +8029 CAVPTDRWGKLQF TRAV12-2*01 TRAJ24*01 CASSDGLLWPDTQYF TRBV14*01 TRBJ2-3*01 HLA-A*02:01 B2M MHCI YLQQNWWTL LMP1 EBV PMID:34811538 tetramer-sort yes amplicon-seq Naive T cells healthy healthy_3 chip0423_161774 PBMC +8030 CAVSSSGYALNF TRAV12-2*01 TRAJ41*01 CASSSGSYEQYF TRBV7-2*01 TRBJ2-7*01 HLA-A*02:01 B2M MHCI ILGALLSIL ZNT8 HomoSapiens PMID:34811538 tetramer-sort yes amplicon-seq Naive T cells T1D T1D_6 chip0423_571304 PBMC +8031 CASSPPGRNEKLFF TRAV9-2*01 TRAJ5*01 CASSPPGRNEKLFF TRBV12-3*01,TRBV12-4*01 TRBJ1-4*01 HLA-B*08:01 B2M MHCI RAKFKQLL BZLF1 EBV PMID:34811538 tetramer-sort yes amplicon-seq effector memory T cells T1D T1D_5 chip0423_558884 PBMC +8032 CASSLLGQDEDNSPLHF TRBV11-1*01 TRBJ1-6*01 HLA-B*08:01 B2M MHCI RAKFKQLL BZLF1 EBV PMID:34811538 tetramer-sort yes amplicon-seq transitional T cells between effector and memory populations T1D T1D_5 chip0423_545513 PBMC +8033 CPPSEKFC??aGRQGPLLF TRAV29/DV5*01 TRAJ42*01 HLA-A*02:01 B2M MHCI GILGFVFTL M1 InfluenzaA PMID:34811538 tetramer-sort yes amplicon-seq transitional T cells between effector and memory populations healthy healthy_3 chip0423_477116 PBMC +8034 CLVGDPag??gcAATILF TRAV4*01 TRAJ30*01 HLA-B*08:01 B2M MHCI YLKTNLFL G6PC2 HomoSapiens PMID:34811538 tetramer-sort yes amplicon-seq transitional T cells between effector and memory populations T1D T1D_5 chip0423_728269 PBMC +8036 CASQGGSQGNLIF TRAV20*01 TRAJ42*01 CARCFGGQTETQYS TRBV13*01 TRBJ2-5*01 HLA-A*02:01 B2M MHCI TLLANVTAV VP6 RotavirusA PMID:34811538 tetramer-sort yes amplicon-seq transitional T cells between effector and memory populations T1D T1D_6 chip0423_318677 PBMC +8039 CASSWDINTGELFF TRBV6-1*01 TRBJ2-2*01 HLA-A*01:01 B2M MHCI STNVGSNTY IAPP HomoSapiens PMID:34811538 tetramer-sort yes amplicon-seq Naive T cells T1D T1D_6 chip0423_323700 PBMC +8040 CAGGGSSNTGKLIF TRAV27*01 TRAJ37*01 CASSIRSSYEQYF TRBV19*01 TRBJ2-7*01 HLA-A*02:01 B2M MHCI GILGFVFTL M1 InfluenzaA PMID:34811538 tetramer-sort yes amplicon-seq transitional T cells between effector and memory populations T1D T1D_6 chip0423_238265 PBMC +8042 CILPLWG??tGSYQLTF TRAV26-2*01 TRAJ28*01 CASSVPGc?aGRGPLHF TRBV9*01 TRBJ1-6*01 HLA-B*08:01 B2M MHCI RAKFKQLL BZLF1 EBV PMID:34811538 tetramer-sort yes amplicon-seq effector memory T cells T1D T1D_5 chip0423_495354 PBMC +8043 CAMSISNFGNEKLTF TRAV12-3*01 TRAJ48*01 CASSLKAYREMRSSGANVLTF TRBV28*01 TRBJ2-6*01 HLA-A*02:01 B2M MHCI LLAGIGTVPI PGT HomoSapiens PMID:34811538 tetramer-sort yes amplicon-seq Naive T cells T1D T1D_4 chip0423_602335 PBMC +8044 CAATETSYDKVIF TRAV13-1*01 TRAJ50*01 CASSPPGRNEKLFF TRBV12-3*01,TRBV12-4*01 TRBJ1-4*01 HLA-B*08:01 B2M MHCI RAKFKQLL BZLF1 EBV PMID:34811538 tetramer-sort yes amplicon-seq effector memory T cells T1D T1D_5 chip0423_587524 PBMC +8045 CAVSGGGADGLTF TRAV12-2*01 TRAJ45*01 CASSQVSDTEAFS TRBV4-3*01 TRBJ1-1*01 HLA-A*02:01 B2M MHCI ALGIGILTV MART1 HomoSapiens PMID:34811538 tetramer-sort yes amplicon-seq Naive T cells T1D T1D_6 chip0423_582379 PBMC +8046 CALGAQTSYDKVIF TRAV16*01 TRAJ50*01 CASRMNTGEAFF TRBV2*01 TRBJ1-1*01 HLA-A*01:01 B2M MHCI CTELKLSDY NP InfluenzaA PMID:34811538 tetramer-sort yes amplicon-seq transitional T cells between effector and memory populations T1D T1D_5 chip0423_57233 PBMC +8047 CASSLLGVEQFF TRBV7-9*01 TRBJ2-1*01 HLA-A*01:01 B2M MHCI VSATAGTTVY GAD2 HomoSapiens PMID:34811538 tetramer-sort yes amplicon-seq Naive T cells T1D T1D_6 chip0423_587405 PBMC +8048 CAAAETSYDKVIF TRAV13-1*01 TRAJ50*01 CASQLAGGTGELFF TRBV24-1*01 TRBJ2-2*01 HLA-B*08:01 B2M MHCI RAKFKQLL BZLF1 EBV PMID:34811538 tetramer-sort yes amplicon-seq effector memory T cells T1D T1D_5 chip0423_23667 PBMC +8049 CSASRDSYEQYF TRBV20-1*01 TRBJ2-7*01 HLA-A*02:01 B2M MHCI YLLEMLWRL LMP1 EBV PMID:34811538 tetramer-sort yes amplicon-seq central memory T cells T1D T1D_4 chip0423_813193 PBMC +8050 CASSQVNNPGDGYTF TRBV14*01 TRBJ1-2*01 HLA-B*08:01 B2M MHCI QAKWRLQTL EBNA3A EBV PMID:34811538 tetramer-sort yes amplicon-seq effector T cells T1D T1D_4 chip0423_765294 PBMC +8051 CASSSTGTPNTGELFF TRBV6-5*01 TRBJ2-2*01 HLA-A*02:01 B2M MHCI IQATVMIIV ZNT8 HomoSapiens PMID:34811538 tetramer-sort yes amplicon-seq Naive T cells healthy healthy_3 chip0423_333227 PBMC +8052 CAVNRGAGKSTF TRAV12-2*01 TRAJ27*01 CAWSGQcc?*PEKLFF TRBV30*01 TRBJ1-4*01 HLA-A*02:01 B2M MHCI ALAGIGILTV MART1 HomoSapiens PMID:34811538 tetramer-sort yes amplicon-seq central memory T cells healthy healthy_3 chip0423_278649 PBMC +8053 CASSLGQAYEQYF TRBV7-8*01 TRBJ2-7*01 HLA-B*08:01 B2M MHCI FLRGRAYGL EBNA3A EBV PMID:34811538 tetramer-sort yes amplicon-seq effector memory T cells T1D T1D_6 chip0423_884007 PBMC +8054 CVVNGENARLMF TRAV12-1*01 TRAJ31*01 CASGAMWGAPLHF TRBV2*01 TRBJ1-6*01 HLA-A*01:01 B2M MHCI CTELKLSDY NP InfluenzaA PMID:34811538 tetramer-sort yes amplicon-seq transitional T cells between effector and memory populations healthy healthy_3 chip0423_813233 PBMC +8055 CASSLVVSHGELFF TRBV7-2*01 TRBJ2-2*01 HLA-B*08:01 B2M MHCI RAKFKQLL BZLF1 EBV PMID:34811538 tetramer-sort yes amplicon-seq effector memory T cells T1D T1D_4 chip0423_541667 PBMC +8056 CASSLAGREGTQYF TRBV11-2*01 TRBJ2-3*01 HLA-B*08:01 B2M MHCI ELRSRYWAI NP InfluenzaA PMID:34811538 tetramer-sort yes amplicon-seq central memory T cells T1D T1D_6 chip0423_146257 PBMC +8058 CAMREPStc?RDGQKLLF TRAV14/DV4*01 TRAJ16*01 CASRGGQERGQPQHF TRBV2*01 TRBJ1-5*01 HLA-B*08:01 B2M MHCI EIYKRWII Gag HIV-1 PMID:34811538 tetramer-sort yes amplicon-seq Naive T cells T1D T1D_5 chip0423_470721 PBMC +8059 CAVRDTTWDDKIIF TRAV3*01 TRAJ30*01 HLA-B*08:01 B2M MHCI FLRGRAYGL EBNA3A EBV PMID:34811538 tetramer-sort yes amplicon-seq effector memory T cells T1D T1D_4 chip0423_441464 PBMC +8060 CILPLAGGTSYGKLTF TRAV26-2*01 TRAJ52*01 CASSSGQAYEQYF TRBV7-8*01 TRBJ2-7*01 HLA-B*08:01 B2M MHCI FLRGRAYGL EBNA3A EBV PMID:34811538 tetramer-sort yes amplicon-seq effector memory T cells healthy healthy_4 chip0423_273450 PBMC +8063 CASSLAVGEGPQHF TRBV7-9*01 TRBJ1-5*01 HLA-B*08:01 B2M MHCI RAKFKQLL BZLF1 EBV PMID:34811538 tetramer-sort yes amplicon-seq effector memory T cells T1D T1D_4 chip0423_108816 PBMC +8064 CASSLLGEQNSPLHF TRBV7-9*01 TRBJ1-6*01 HLA-B*08:01 B2M MHCI RAKFKQLL BZLF1 EBV PMID:34811538 tetramer-sort yes amplicon-seq effector memory T cells T1D T1D_5 chip0423_878040 PBMC +8065 CASSLAVGEGPQHF TRBV7-9*01 TRBJ1-5*01 HLA-B*08:01 B2M MHCI RAKFKQLL BZLF1 EBV PMID:34811538 tetramer-sort yes amplicon-seq effector memory T cells T1D T1D_4 chip0423_170366 PBMC +8066 CASSLVGDTDTQYF TRBV5-1*01 TRBJ2-3*01 HLA-A*01:01 B2M MHCI LTSLTILQLY G6PC2 HomoSapiens PMID:34811538 tetramer-sort yes amplicon-seq Naive T cells T1D T1D_5 chip0423_450575 PBMC +8067 CAYASNAVGIRYGKLTF TRAV38-2/DV8*01 TRAJ52*01 CASSIGLYGYTF TRBV19*01 TRBJ1-2*01 HLA-A*02:01 B2M MHCI GILGFVFTL M1 InfluenzaA PMID:34811538 tetramer-sort yes amplicon-seq transitional T cells between effector and memory populations T1D T1D_4 chip0423_611879 PBMC +8068 CASTLGDHEQFF TRBV5-1*01 TRBJ2-1*01 HLA-B*08:01 B2M MHCI YAKWKLCSA ZNT8 HomoSapiens PMID:34811538 tetramer-sort yes amplicon-seq Naive T cells healthy healthy_4 chip0423_37312 PBMC +8069 CALSRSDGQKLLF TRAV19*01 TRAJ16*01 HLA-A*01:01 B2M MHCI VTDAAHLLI ZNT8 HomoSapiens PMID:34811538 tetramer-sort yes amplicon-seq Naive T cells T1D T1D_4 chip0423_860094 PBMC +8071 CAMRAIEGANNLFF TRAV14/DV4*01 TRAJ36*01 HLA-B*08:01 B2M MHCI RAKFKQLL BZLF1 EBV PMID:34811538 tetramer-sort yes amplicon-seq effector T cells T1D T1D_5 chip0423_353561 PBMC +8072 CVVNGENARLMF TRAV12-1*01 TRAJ31*01 HLA-A*01:01 B2M MHCI CTELKLSDY NP InfluenzaA PMID:34811538 tetramer-sort yes amplicon-seq transitional T cells between effector and memory populations healthy healthy_3 chip0423_129726 PBMC +8073 CASSLELGLPYEQYF TRBV5-1*01 TRBJ2-7*01 HLA-B*08:01 B2M MHCI QAKWRLQTL EBNA3A EBV PMID:34811538 tetramer-sort yes amplicon-seq effector T cells T1D T1D_4 chip0423_99327 PBMC +8074 CAASSSASKIIF TRAV1-1*01 TRAJ3*01 CASSQDGLAATSTDTQFF TRBV4-1*01 TRBJ2-3*01 HLA-A*01:01 B2M MHCI CTELKLSDY NP InfluenzaA PMID:34811538 tetramer-sort yes amplicon-seq transitional T cells between effector and memory populations healthy healthy_3 chip0423_36139 PBMC +8075 CVVCHLac?NTNAMRL TRAV8-2*01 TRAJ43*01 CASSVGRAQSVAFF TRBV9*01 TRBJ1-1*01 HLA-B*08:01 B2M MHCI RMMEYGTTM GAD2 HomoSapiens PMID:34811538 tetramer-sort yes amplicon-seq Naive T cells T1D T1D_4 chip0423_670185 PBMC +8076 CALADRY??tSYGKLTF TRAV16*01 TRAJ52*01 HLA-A*02:01 B2M MHCI LLAGIGTVPI PGT HomoSapiens PMID:34811538 tetramer-sort yes amplicon-seq Naive T cells healthy healthy_3 chip0423_595143 PBMC +8077 CASSLGQAYEQYF TRBV7-8*01 TRBJ2-7*01 HLA-B*08:01 B2M MHCI FLRGRAYGL EBNA3A EBV PMID:34811538 tetramer-sort yes amplicon-seq effector memory T cells T1D T1D_6 chip0423_347064 PBMC +8079 CASSLFGAFGESYEQYF TRBV28*01 TRBJ2-7*01 HLA-A*02:01 B2M MHCI ALAGIGILTV MART1 HomoSapiens PMID:34811538 tetramer-sort yes amplicon-seq transitional T cells between effector and memory populations healthy healthy_3 chip0423_845353 PBMC +8080 CASSQVNNPGDGYTF TRBV14*01 TRBJ1-2*01 HLA-B*08:01 B2M MHCI QAKWRLQTL EBNA3A EBV PMID:34811538 tetramer-sort yes amplicon-seq effector memory T cells T1D T1D_4 chip0423_644148 PBMC +8082 CATPSSGNTPLVF TRAV17*01 TRAJ29*01 CASSLEGLAGGNEQFF TRBV5-1*01 TRBJ2-1*01 HLA-B*08:01 B2M MHCI MALWMRLL INS HomoSapiens PMID:34811538 tetramer-sort yes amplicon-seq Naive T cells T1D T1D_5 chip0423_552338 PBMC +8083 CASSLGQAYEQYF TRBV7-8*01 TRBJ2-7*01 HLA-B*08:01 B2M MHCI FLRGRAYGL EBNA3A EBV PMID:34811538 tetramer-sort yes amplicon-seq effector memory T cells T1D T1D_6 chip0423_413803 PBMC +8084 CAVSDGEGAQKLVF TRAV8-6*01 TRAJ54*01 CASSLTVLAGPNTEAFF TRBV7-3*01 TRBJ1-1*01 HLA-B*08:01 B2M MHCI RAKFKQLL BZLF1 EBV PMID:34811538 tetramer-sort yes amplicon-seq effector T cells T1D T1D_4 chip0423_521063 PBMC +8085 CAMSLSNFGNEKLTF TRAV12-3*01 TRAJ48*01 HLA-A*02:01 B2M MHCI LLAGIGTVPI PGT HomoSapiens PMID:34811538 tetramer-sort yes amplicon-seq Naive T cells T1D T1D_4 chip0423_440841 PBMC +8086 CASSQAPGQRTGEPFF TRBV4-1*01 TRBJ2-2*01 HLA-B*08:01 B2M MHCI RAKFKQLL BZLF1 EBV PMID:34811538 tetramer-sort yes amplicon-seq effector memory T cells healthy healthy_4 chip0423_256450 PBMC +8087 CACPSHQKLSF TRAV38-1*01 TRAJ52*01 HLA-B*08:01 B2M MHCI SRKHKWKL GAD2 HomoSapiens PMID:34811538 tetramer-sort yes amplicon-seq Naive T cells T1D T1D_5 chip0423_45751 PBMC +8089 CASSLGQAYEQYF TRBV7-8*01 TRBJ2-7*01 HLA-B*08:01 B2M MHCI FLRGRAYGL EBNA3A EBV PMID:34811538 tetramer-sort yes amplicon-seq effector T cells T1D T1D_6 chip0423_802233 PBMC +8090 CAVDSGNTPLVF TRAV1-2*01 TRAJ29*01 HLA-B*08:01 B2M MHCI QAKWRLQTL EBNA3A EBV PMID:34811538 tetramer-sort yes amplicon-seq effector memory T cells T1D T1D_4 chip0423_786724 PBMC +8091 CASSYSSTGEYF TRBV6-2*01,TRBV6-3*01 TRBJ2-7*01 HLA-A*02:01 B2M MHCI YLLEMLWRL LMP1 EBV PMID:34811538 tetramer-sort yes amplicon-seq central memory T cells T1D T1D_4 chip0423_189521 PBMC +8092 CASSLAVGEGPQHF TRBV7-9*01 TRBJ1-5*01 HLA-B*08:01 B2M MHCI RAKFKQLL BZLF1 EBV PMID:34811538 tetramer-sort yes amplicon-seq effector memory T cells T1D T1D_4 chip0423_11820 PBMC +8093 CASSLGQAYEQYF TRBV7-8*01 TRBJ2-7*01 HLA-B*08:01 B2M MHCI FLRGRAYGL EBNA3A EBV PMID:34811538 tetramer-sort yes amplicon-seq effector memory T cells T1D T1D_6 chip0423_607271 PBMC +8095 CILPLEGGTSYGKLTF TRAV26-2*01 TRAJ52*01 CASSSGRAYERYF TRBV7-8*01 TRBJ2-7*01 HLA-B*08:01 B2M MHCI FLRGRAYGL EBNA3A EBV PMID:34811538 tetramer-sort yes amplicon-seq effector memory T cells T1D T1D_4 chip0423_715830 PBMC +8096 CAVSSDGNNRTLL* TRAV1-2*01 TRAJ38*01 CASSLHRGAEEKLFF TRBV7-2*01 TRBJ1-4*01 HLA-B*08:01 B2M MHCI RMMEYGTTM GAD2 HomoSapiens PMID:34811538 tetramer-sort yes amplicon-seq Naive T cells T1D T1D_5 chip0423_452944 PBMC +8097 CASREVGg?gDTYEQYF TRBV2*01 TRBJ2-7*01 HLA-A*02:01 B2M MHCI LVGPTPVNI POL HIV-1 PMID:34811538 tetramer-sort yes amplicon-seq Naive T cells T1D T1D_6 chip0423_35903 PBMC +8098 CAATETSYDKVIF TRAV13-1*01 TRAJ50*01 HLA-B*08:01 B2M MHCI RAKFKQLL BZLF1 EBV PMID:34811538 tetramer-sort yes amplicon-seq effector memory T cells T1D T1D_5 chip0423_660434 PBMC +8100 CIVRVSGSARQLTF TRAV26-1*01 TRAJ22*01 HLA-B*08:01 B2M MHCI YLKTNLFL G6PC2 HomoSapiens PMID:34811538 tetramer-sort yes amplicon-seq Naive T cells T1D T1D_4 chip0423_676212 PBMC +8102 CASSSVGQRDSPLHF TRBV7-9*01 TRBJ1-6*01 HLA-B*08:01 B2M MHCI RAKFKQLL BZLF1 EBV PMID:34811538 tetramer-sort yes amplicon-seq effector T cells T1D T1D_5 chip0423_751253 PBMC +8103 CILPLAGGTSYGKLTF TRAV26-2*01 TRAJ52*01 CASSLGQAYEQYF TRBV7-8*01 TRBJ2-7*01 HLA-B*08:01 B2M MHCI FLRGRAYGL EBNA3A EBV PMID:34811538 tetramer-sort yes amplicon-seq effector memory T cells T1D T1D_6 chip0423_478847 PBMC +8104 CASSASTAREQYF TRBV9*01 TRBJ2-7*01 HLA-B*08:01 B2M MHCI LRLRLDQL GFAP HomoSapiens PMID:34811538 tetramer-sort yes amplicon-seq Naive T cells T1D T1D_5 chip0423_234862 PBMC +8105 CAVNSGNTPLVF TRAV1-2*01 TRAJ29*01 CAGSRVDNPVDRYTF TRBV14*01 TRBJ1-2*01 HLA-B*08:01 B2M MHCI QAKWRLQTL EBNA3A EBV PMID:34811538 tetramer-sort yes amplicon-seq effector memory T cells T1D T1D_4 chip0423_437427 PBMC +8106 CAMGGWat?SSYKLIF TRAV14/DV4*01 TRAJ12*01 CASLGGWRQYF TRBV27*01 TRBJ2-3*01 HLA-B*08:01 B2M MHCI YLKTNLFL G6PC2 HomoSapiens PMID:34811538 tetramer-sort yes amplicon-seq Naive T cells T1D T1D_5 chip0423_55452 PBMC +8107 CAATETSYDKVIF TRAV13-1*01 TRAJ50*01 CARRLAVGARPQHF TRBV7-9*01 TRBJ1-5*01 HLA-B*08:01 B2M MHCI RAKFKQLL BZLF1 EBV PMID:34811538 tetramer-sort yes amplicon-seq effector memory T cells T1D T1D_5 chip0423_768293 PBMC +8108 CAVPYRDDKIIF TRAV12-2*01 TRAJ30*01 CASSYGTGMGHTIYF TRBV6-5*01 TRBJ1-3*01 HLA-A*02:01 B2M MHCI ALAGIGILTV MART1 HomoSapiens PMID:34811538 tetramer-sort yes amplicon-seq Naive T cells T1D T1D_6 chip0423_489438 PBMC +8109 GAVITVRYNDYRLGF TRAV12-2*01 TRAJ20*01 CARRHGQGENTEAFF TRBV4-1*01 TRBJ1-1*01 HLA-B*08:01 B2M MHCI RAKFKQLL BZLF1 EBV PMID:34811538 tetramer-sort yes amplicon-seq effector T cells T1D T1D_4 chip0423_85196 PBMC +8111 CAGAGGGSQGNLIL TRAV27*01 TRAJ42*01 CASSSRSTGELFF TRBV19*01 TRBJ2-2*01 HLA-A*02:01 B2M MHCI GILGFVFTL M1 InfluenzaA PMID:34811538 tetramer-sort yes amplicon-seq effector T cells T1D T1D_4 chip0423_869967 PBMC +8112 CAEMETSYDKVIF TRAV13-2*01 TRAJ50*01 HLA-B*08:01 B2M MHCI RAKFKQLL BZLF1 EBV PMID:34811538 tetramer-sort yes amplicon-seq effector memory T cells T1D T1D_5 chip0423_828765 PBMC +8113 CAMREGEAGGFKTIF TRAV14/DV4*01 TRAJ9*01 CASSLGGTGFQPQHF TRBV7-9*01 TRBJ1-5*01 HLA-B*08:01 B2M MHCI RAKFKQLL BZLF1 EBV PMID:34811538 tetramer-sort yes amplicon-seq effector memory T cells T1D T1D_5 chip0423_359725 PBMC +8114 CLVAETRSGVRF TRAV4*01 TRAJ43*01 CASSSLGGEDEQYF TRBV7-9*01 TRBJ2-7*01 HLA-A*01:01 B2M MHCI CTELKLSDY NP InfluenzaA PMID:34811538 tetramer-sort yes amplicon-seq effector T cells T1D T1D_5 chip0423_255981 PBMC +8115 CAVKGGQKLLF TRAV12-2*01 TRAJ16*01 CASSPLGLSSYNEQFF TRBV28*01 TRBJ2-1*01 HLA-A*02:01 B2M MHCI LLAGIGTVPI PGT HomoSapiens PMID:34811538 tetramer-sort yes amplicon-seq Naive T cells T1D T1D_6 chip0423_577092 PBMC +8116 CILPLAGGTSYGKLTF TRAV26-2*01 TRAJ52*01 CASSLGQAYEQYF TRBV7-8*01 TRBJ2-7*01 HLA-B*08:01 B2M MHCI FLRGRAYGL EBNA3A EBV PMID:34811538 tetramer-sort yes amplicon-seq effector T cells T1D T1D_6 chip0423_498770 PBMC +8117 CAVPHDYKLSF TRAV21*01 TRAJ20*01 CASSLLGGASETQYF TRBV7-3*01 TRBJ2-5*01 HLA-A*01:01 B2M MHCI VSATAGTTVY GAD2 HomoSapiens PMID:34811538 tetramer-sort yes amplicon-seq Naive T cells T1D T1D_5 chip0423_255271 PBMC +8119 CAVRKYGNKLVF TRAV1-2*01 TRAJ47*01 CASSLAGREGTQYF TRBV11-3*01 TRBJ2-3*01 HLA-B*08:01 B2M MHCI ELRSRYWAI NP InfluenzaA PMID:34811538 tetramer-sort yes amplicon-seq transitional T cells between effector and memory populations T1D T1D_6 chip0423_703628 PBMC +8120 CAVNTGGFKTIF TRAV12-2*01 TRAJ9*01 CASGDRSWETQYF TRBV6-2*01,TRBV6-3*01 TRBJ2-5*01 HLA-A*02:01 B2M MHCI ALAGIGILTV MART1 HomoSapiens PMID:34811538 tetramer-sort yes amplicon-seq Naive T cells T1D T1D_4 chip0423_89943 PBMC +8122 CAEAWGGSEGNLSL TRAV25*01 TRAJ42*01 CASSIRSTGELFF TRBV19*01 TRBJ2-2*01 HLA-A*02:01 B2M MHCI GILGFVFTL M1 InfluenzaA PMID:34811538 tetramer-sort yes amplicon-seq transitional T cells between effector and memory populations T1D T1D_6 chip0423_621908 PBMC +8123 CAATETSYDKVIF TRAV13-1*01 TRAJ50*01 CASSPPGRNEKLFF TRBV12-3*01,TRBV12-4*01 TRBJ1-4*01 HLA-B*08:01 B2M MHCI RAKFKQLL BZLF1 EBV PMID:34811538 tetramer-sort yes amplicon-seq effector T cells T1D T1D_5 chip0423_500903 PBMC +8124 CASSQVNNPGDGYTF TRBV14*01 TRBJ1-2*01 HLA-B*08:01 B2M MHCI QAKWRLQTL EBNA3A EBV PMID:34811538 tetramer-sort yes amplicon-seq effector memory T cells T1D T1D_4 chip0423_44989 PBMC +8125 CAARETSYDKVIF TRAV13-1*01 TRAJ50*01 CASSVSRYQNTGELLF TRBV9*01 TRBJ2-2*01 HLA-B*08:01 B2M MHCI RAKFKQLL BZLF1 EBV PMID:34811538 tetramer-sort yes amplicon-seq effector memory T cells T1D T1D_5 chip0423_312197 PBMC +8126 CAARTRag??caNGHLTF TRAV41*01 TRAJ48*01 HLA-A*01:01 B2M MHCI STNVGSNTY IAPP HomoSapiens PMID:34811538 tetramer-sort yes amplicon-seq Naive T cells T1D T1D_5 chip0423_183417 PBMC +8127 CASSQDPRTGRTEAFF TRBV3-1*01 TRBJ1-1*01 HLA-A*02:01 B2M MHCI LLAGIGTVPI PGT HomoSapiens PMID:34811538 tetramer-sort yes amplicon-seq Naive T cells T1D T1D_6 chip0423_173018 PBMC +8128 CAMREGDSSFGNEKLTF TRAV14/DV4*01 TRAJ48*01 CASSVGGGVTDTEAFF TRBV9*01 TRBJ1-1*01 HLA-A*02:01 B2M MHCI GILGFVFTL M1 InfluenzaA PMID:34811538 tetramer-sort yes amplicon-seq transitional T cells between effector and memory populations T1D T1D_4 chip0423_172680 PBMC +8129 CASSLSLVETGELFF TRBV27*01 TRBJ2-2*01 HLA-A*02:01 B2M MHCI LLAGIGTVPI PGT HomoSapiens PMID:34811538 tetramer-sort yes amplicon-seq Naive T cells T1D T1D_6 chip0423_120441 PBMC +8130 CASSPDTRNEQYF TRBV18*01 TRBJ2-7*01 HLA-A*01:01 B2M MHCI CTELKLSDY NP InfluenzaA PMID:34811538 tetramer-sort yes amplicon-seq transitional T cells between effector and memory populations healthy healthy_3 chip0423_37803 PBMC +8134 CAAPYSGGYQKVTF TRAV13-1*01 TRAJ13*01 CASSLGQGYYNEQFF TRBV28*01 TRBJ2-1*01 HLA-B*08:01 B2M MHCI TLKKMREI GAD2 HomoSapiens PMID:34811538 tetramer-sort yes amplicon-seq Naive T cells T1D T1D_4 chip0423_880308 PBMC +8135 CASSDIREGQGEAFF TRBV10-2*01 TRBJ1-1*01 HLA-B*08:01 B2M MHCI QAKWRLQTL EBNA3A EBV PMID:34811538 tetramer-sort yes amplicon-seq transitional T cells between effector and memory populations T1D T1D_6 chip0423_449673 PBMC +8136 CAGQRETSYDKVLF TRAV25*01 TRAJ50*01 CASSQLGGVYNEQFF TRBV7-9*01 TRBJ2-1*01 HLA-B*08:01 B2M MHCI RAKFKQLL BZLF1 EBV PMID:34811538 tetramer-sort yes amplicon-seq effector T cells T1D T1D_5 chip0423_436597 PBMC +8138 CVVNGENARLMF TRAV12-1*01 TRAJ31*01 CASSEMWGAPLHF TRBV2*01 TRBJ1-6*01 HLA-A*01:01 B2M MHCI CTELKLSDY NP InfluenzaA PMID:34811538 tetramer-sort yes amplicon-seq transitional T cells between effector and memory populations healthy healthy_3 chip0423_128552 PBMC +8139 CASSFLGQGTLAGELFF TRBV28*01 TRBJ2-2*01 HLA-B*08:01 B2M MHCI QAKWRLQTL EBNA3A EBV PMID:34811538 tetramer-sort yes amplicon-seq effector memory T cells T1D T1D_4 chip0423_92134 PBMC +8140 CAASETSYDKVIF TRAV13-1*01 TRAJ50*01 HLA-B*08:01 B2M MHCI RAKFKQLL BZLF1 EBV PMID:34811538 tetramer-sort yes amplicon-seq effector memory T cells healthy healthy_4 chip0423_735244 PBMC +8141 CSAIQGg?gHTEAFF TRBV20-1*01 TRBJ1-1*01 HLA-B*08:01 B2M MHCI RAKFKQLL BZLF1 EBV PMID:34811538 tetramer-sort yes amplicon-seq effector memory T cells T1D T1D_5 chip0423_592092 PBMC +8142 CAVNPSFQKLVF TRAV12-2*01 TRAJ8*01 CASSQEGQGAGELFF TRBV4-1*01 TRBJ2-2*01 HLA-A*01:01 B2M MHCI CTELKLSDY NP InfluenzaA PMID:34811538 tetramer-sort yes amplicon-seq transitional T cells between effector and memory populations healthy healthy_3 chip0423_619860 PBMC +8143 CAASSTG??tSNYQLIW TRAV29/DV5*01 TRAJ33*01 CASSPEGRYEQYF TRBV7-9*01 TRBJ2-7*01 HLA-A*01:01 B2M MHCI HSNLNDATY NP InfluenzaA PMID:34811538 tetramer-sort yes amplicon-seq Naive T cells healthy healthy_3 chip0423_243903 PBMC +8144 CAISESTDSGRLYGYTF TRBV10-3*01 TRBJ1-2*01 HLA-A*01:01 B2M MHCI CTELKLSDY NP InfluenzaA PMID:34811538 tetramer-sort yes amplicon-seq transitional T cells between effector and memory populations T1D T1D_6 chip0423_867723 PBMC +8145 CASSLAGASYEQYF TRBV7-9*01 TRBJ2-7*01 HLA-A*02:01 B2M MHCI LALWGPDPAA INS HomoSapiens PMID:34811538 tetramer-sort yes amplicon-seq Naive T cells T1D T1D_4 chip0423_653748 PBMC +8147 CIVREGGGADGLTF TRAV26-1*01 TRAJ45*01 CASSLAVGEGPQHF TRBV7-9*01 TRBJ1-5*01 HLA-B*08:01 B2M MHCI RAKFKQLL BZLF1 EBV PMID:34811538 tetramer-sort yes amplicon-seq effector T cells T1D T1D_4 chip0423_444279 PBMC +8149 CASSQVNNPGDGYTF TRBV14*01 TRBJ1-2*01 HLA-B*08:01 B2M MHCI QAKWRLQTL EBNA3A EBV PMID:34811538 tetramer-sort yes amplicon-seq effector memory T cells T1D T1D_4 chip0423_722827 PBMC +8150 GAMKKSNFGNE*LTF TRAV12-3*01 TRAJ48*01 CASSPNGGNSGNTIYF TRBV7-2*01 TRBJ1-3*01 HLA-A*02:01 B2M MHCI LLAGIGTVPI PGT HomoSapiens PMID:34811538 tetramer-sort yes amplicon-seq Naive T cells healthy healthy_3 chip0423_654803 PBMC +8152 CAVLKTSYDKVIF TRAV12-2*01 TRAJ50*01 CASSFRGQGIGEQYF TRBV7-9*01 TRBJ2-7*01 HLA-B*08:01 B2M MHCI YAYAKWKL ZNT8 HomoSapiens PMID:34811538 tetramer-sort yes amplicon-seq Naive T cells T1D T1D_5 chip0423_333743 PBMC +8153 CASSLLGEQNSPLHF TRBV7-9*01 TRBJ1-6*01 HLA-B*08:01 B2M MHCI RAKFKQLL BZLF1 EBV PMID:34811538 tetramer-sort yes amplicon-seq effector T cells T1D T1D_5 chip0423_81559 PBMC +8154 CASSSGQAYEQYF TRBV7-8*01 TRBJ2-7*01 HLA-B*08:01 B2M MHCI FLRGRAYGL EBNA3A EBV PMID:34811538 tetramer-sort yes amplicon-seq effector memory T cells healthy healthy_4 chip0423_571638 PBMC +8155 CAVKDTDKLIF TRAV8-1*01 TRAJ34*01 HLA-A*02:01 B2M MHCI YVLDHLIVV BRLF1 EBV PMID:34811538 tetramer-sort yes amplicon-seq effector memory T cells T1D T1D_6 chip0423_437864 PBMC +8157 CASSQKTSGGYLNTGELFS TRBV11-3*01 TRBJ2-2*01 HLA-A*02:01 B2M MHCI LLAGIGTVPI PGT HomoSapiens PMID:34811538 tetramer-sort yes amplicon-seq Naive T cells healthy healthy_4 chip0423_598074 PBMC +8158 CAVHLTTDSWGKLQF TRAV20*01 TRAJ24*01 HLA-B*08:01 B2M MHCI EIYKRWII Gag HIV-1 PMID:34811538 tetramer-sort yes amplicon-seq Naive T cells healthy healthy_4 chip0423_582105 PBMC +8159 CAALTGENEKLTF TRAV29/DV5*01 TRAJ48*01 CASSLVQGGSDTQYF TRBV7-2*01 TRBJ2-3*01 HLA-A*02:01 B2M MHCI LLAGIGTVPI PGT HomoSapiens PMID:34811538 tetramer-sort yes amplicon-seq Naive T cells T1D T1D_6 chip0423_377301 PBMC +8161 CAVKVWag??atGQKLLF TRAV8-6*01 TRAJ16*01 HLA-B*08:01 B2M MHCI QAKWRLQTL EBNA3A EBV PMID:34811538 tetramer-sort yes amplicon-seq transitional T cells between effector and memory populations T1D T1D_6 chip0423_297511 PBMC +8162 CAVSEREYGNKLVF TRAV8-4*01 TRAJ47*01 HLA-B*08:01 B2M MHCI RAKFKQLL BZLF1 EBV PMID:34811538 tetramer-sort yes amplicon-seq transitional T cells between effector and memory populations T1D T1D_4 chip0423_296010 PBMC +8163 CAFYPGNQFYF TRAV38-1*01 TRAJ49*01 CASSIDHGSYEQYF TRBV19*01 TRBJ2-7*01 HLA-A*02:01 B2M MHCI LLFNILGGWV NS4B HCV PMID:34811538 tetramer-sort yes amplicon-seq Naive T cells T1D T1D_4 chip0423_276664 PBMC +8164 CASSYDGYSNQPQHF TRBV4-1*01 TRBJ1-5*01 HLA-B*08:01 B2M MHCI MALWMRLL INS HomoSapiens PMID:34811538 tetramer-sort yes amplicon-seq Naive T cells T1D T1D_6 chip0423_159285 PBMC +8165 CIVRVVCac?GTASKLPF TRAV26-1*01 TRAJ44*01 CASSLAVGEGPQHF TRBV7-9*01 TRBJ1-5*01 HLA-B*08:01 B2M MHCI RAKFKQLL BZLF1 EBV PMID:34811538 tetramer-sort yes amplicon-seq effector memory T cells T1D T1D_4 chip0423_512042 PBMC +8167 CAAIETSYDKVIF TRAV13-1*01 TRAJ50*01 CSVGGNTEAFF TRBV29-1*01 TRBJ1-1*01 HLA-B*08:01 B2M MHCI RAKFKQLL BZLF1 EBV PMID:34811538 tetramer-sort yes amplicon-seq effector T cells T1D T1D_5 chip0423_804748 PBMC +8169 CASSLAVGEGPQHF TRBV7-9*01 TRBJ1-5*01 HLA-B*08:01 B2M MHCI RAKFKQLL BZLF1 EBV PMID:34811538 tetramer-sort yes amplicon-seq effector memory T cells T1D T1D_4 chip0423_155847 PBMC +8170 CAGDSWGKLQF TRAV12-1*01 TRAJ24*01 CASSPGVGGADTQYF TRBV3-1*01 TRBJ2-3*01 HLA-A*02:01 B2M MHCI LLSLFSLWL ZNT8 HomoSapiens PMID:34811538 tetramer-sort yes amplicon-seq transitional T cells between effector and memory populations T1D T1D_6 chip0423_777650 PBMC +8171 CAASPLMNNNAGNMLTF TRAV23/DV6*01 TRAJ39*01 CASSHNYAEQFF TRBV25-1*01 TRBJ2-1*01 HLA-A*02:01 B2M MHCI TLLANVTAV VP6 RotavirusA PMID:34811538 tetramer-sort yes amplicon-seq transitional T cells between effector and memory populations T1D T1D_6 chip0423_503513 PBMC +8172 CAVDFMNYGGATNKLIF TRAV36/DV7*01 TRAJ32*01 HLA-A*01:01 B2M MHCI VSATAGTTVY GAD2 HomoSapiens PMID:34811538 tetramer-sort yes amplicon-seq Naive T cells T1D T1D_4 chip0423_39491 PBMC +8173 CAGNYGGSQGNLIF TRAV25*01 TRAJ42*01 CASSLRSTGELFF TRBV19*01 TRBJ2-2*01 HLA-A*02:01 B2M MHCI GILGFVFTL M1 InfluenzaA PMID:34811538 tetramer-sort yes amplicon-seq transitional T cells between effector and memory populations T1D T1D_4 chip0423_379669 PBMC +8174 CIAVTStc??ccGNQFYF TRAV26-1*01 TRAJ49*01 CSAGRDGTNEKLFF TRBV29-1*01 TRBJ1-4*01 HLA-A*02:01 B2M MHCI GLCTLVAML BLMF1 EBV PMID:34811538 tetramer-sort yes amplicon-seq effector memory T cells T1D T1D_6 chip0423_310942 PBMC +8175 CATAGLSGFCTLAL TRAV17*01 TRAJ11*01 HLA-A*02:01 B2M MHCI FLYALALLL LMP2 EBV PMID:34811538 tetramer-sort yes amplicon-seq central memory T cells T1D T1D_6 chip0423_216231 PBMC +8176 CASTSTETVDGYTF TRBV5-4*01 TRBJ1-2*01 HLA-B*08:01 B2M MHCI QAKWRLQTL EBNA3A EBV PMID:34811538 tetramer-sort yes amplicon-seq effector memory T cells T1D T1D_6 chip0423_876245 PBMC +8177 CAAGRPat?NTDKLIF TRAV20*01 TRAJ34*01 CASSPDGSTGELFF TRBV12-3*01,TRBV12-4*01 TRBJ2-2*01 HLA-B*08:01 B2M MHCI RAKFKQLL BZLF1 EBV PMID:34811538 tetramer-sort yes amplicon-seq effector T cells T1D T1D_5 chip0423_585082 PBMC +8178 CSVGTGGTNEKLFF TRBV29-1*01 TRBJ1-4*01 HLA-A*02:01 B2M MHCI GLCTLVAML BLMF1 EBV PMID:34811538 tetramer-sort yes amplicon-seq effector T cells T1D T1D_6 chip0423_789748 PBMC +8180 CAISISNFGNEKLTF TRAV12-3*01 TRAJ48*01 CARSRGRGNTGELFF TRBV7-9*01 TRBJ2-2*01 HLA-A*02:01 B2M MHCI LLAGIGTVPI PGT HomoSapiens PMID:34811538 tetramer-sort yes amplicon-seq Naive T cells T1D T1D_4 chip0423_578820 PBMC +8182 CASCGDISYNEQFF TRBV2*01 TRBJ2-1*01 HLA-A*02:01 B2M MHCI LLAGIGTVPI PGT HomoSapiens PMID:34811538 tetramer-sort yes amplicon-seq Naive T cells T1D T1D_6 chip0423_759333 PBMC +8183 CASSLAPGLAEETQYF TRBV3-1*01 TRBJ2-5*01 HLA-A*02:01 B2M MHCI LLAGIGTVPI PGT HomoSapiens PMID:34811538 tetramer-sort yes amplicon-seq Naive T cells T1D T1D_4 chip0423_734356 PBMC +8184 CASSPLGSNEKLFF TRBV7-9*01 TRBJ1-4*01 HLA-B*08:01 B2M MHCI RAKFKQLL BZLF1 EBV PMID:34811538 tetramer-sort yes amplicon-seq effector memory T cells T1D T1D_5 chip0423_171455 PBMC +8185 CAFSISNFGNEKLTF TRAV12-3*01 TRAJ48*01 CASSGENRGHEQYF TRBV6-1*01 TRBJ2-7*01 HLA-A*02:01 B2M MHCI LLAGIGTVPI PGT HomoSapiens PMID:34811538 tetramer-sort yes amplicon-seq Naive T cells T1D T1D_6 chip0423_845680 PBMC +8187 CAMSLSNFGNEKLTF TRAV12-3*01 TRAJ48*01 CATSDNTGTATYNEQFF TRBV24-1*01 TRBJ2-1*01 HLA-A*02:01 B2M MHCI LLAGIGTVPI PGT HomoSapiens PMID:34811538 tetramer-sort yes amplicon-seq Naive T cells T1D T1D_6 chip0423_520762 PBMC +8188 CAFMTNAGGTSYGKLTF TRAV38-1*01 TRAJ52*01 CASSWGSHGYTF TRBV19*01 TRBJ1-2*01 HLA-A*02:01 B2M MHCI GILGFVFTL M1 InfluenzaA PMID:34811538 tetramer-sort yes amplicon-seq transitional T cells between effector and memory populations T1D T1D_4 chip0423_480302 PBMC +8189 CILPLAGGTSYGKLTF TRAV26-2*01 TRAJ52*01 CASSSGQAYEQYF TRBV7-8*01 TRBJ2-7*01 HLA-B*08:01 B2M MHCI FLRGRAYGL EBNA3A EBV PMID:34811538 tetramer-sort yes amplicon-seq transitional T cells between effector and memory populations T1D T1D_4 chip0423_565018 PBMC +8190 CASLLQGEQYF TRBV2*01 TRBJ2-7*01 HLA-B*08:01 B2M MHCI WMRLLPLLAL INS HomoSapiens PMID:34811538 tetramer-sort yes amplicon-seq Naive T cells T1D T1D_6 chip0423_407273 PBMC +8191 CAATATSYDKVIS TRAV13-1*01 TRAJ50*01 CASSPPGRNEKLFF TRBV12-3*01,TRBV12-4*01 TRBJ1-4*01 HLA-B*08:01 B2M MHCI RAKFKQLL BZLF1 EBV PMID:34811538 tetramer-sort yes amplicon-seq effector memory T cells T1D T1D_5 chip0423_35812 PBMC +8192 CASRDPPGPPRF TRBV6-1*01 TRBJ2-7*01 HLA-A*02:01 B2M MHCI SISVLISAL ZNT8 HomoSapiens PMID:34811538 tetramer-sort yes amplicon-seq Naive T cells healthy healthy_3 chip0423_23848 PBMC +8193 CAPKCYTGNQFYF TRAV19*01 TRAJ49*01 CASSSTGGDSNTEAFF TRBV6-5*01 TRBJ1-1*01 HLA-A*02:01 B2M MHCI LLAGIGTVPI PGT HomoSapiens PMID:34811538 tetramer-sort yes amplicon-seq Naive T cells T1D T1D_4 chip0423_537156 PBMC +8194 CASSLLGGKSDTIYF TRBV7-9*01 TRBJ1-3*01 HLA-B*08:01 B2M MHCI RAKFKQLL BZLF1 EBV PMID:34811538 tetramer-sort yes amplicon-seq effector memory T cells T1D T1D_5 chip0423_511622 PBMC +8195 CAMIYSNFGNEKLTF TRAV12-3*01 TRAJ48*01 CASEQRGELFF TRBV19*01 TRBJ2-2*01 HLA-A*02:01 B2M MHCI LLAGIGTVPI PGT HomoSapiens PMID:34811538 tetramer-sort yes amplicon-seq Naive T cells T1D T1D_4 chip0423_455200 PBMC +8197 CASSNPNTGELFF TRBV7-9*01 TRBJ2-2*01 HLA-B*08:01 B2M MHCI WMRLLPLL INS HomoSapiens PMID:34811538 tetramer-sort yes amplicon-seq Naive T cells healthy healthy_4 chip0423_545906 PBMC +8198 CAVNSGNTPLVF TRAV1-2*01 TRAJ29*01 CASSQVNNPGDGYTF TRBV14*01 TRBJ1-2*01 HLA-B*08:01 B2M MHCI QAKWRLQTL EBNA3A EBV PMID:34811538 tetramer-sort yes amplicon-seq effector memory T cells T1D T1D_4 chip0423_462953 PBMC +8199 CASSQGRGYEQYF TRBV4-2*01 TRBJ2-7*01 HLA-A*01:01 B2M MHCI LTSLTILQLY G6PC2 HomoSapiens PMID:34811538 tetramer-sort yes amplicon-seq Naive T cells T1D T1D_5 chip0423_695142 PBMC +8200 CASSSPGTSGTYEQYF TRBV11-2*01 TRBJ2-7*01 HLA-B*08:01 B2M MHCI RAKFKQLL BZLF1 EBV PMID:34811538 tetramer-sort yes amplicon-seq effector memory T cells healthy healthy_4 chip0423_188905 PBMC +8201 CASSLTVLAGPNTEAFF TRBV7-3*01 TRBJ1-1*01 HLA-B*08:01 B2M MHCI RAKFKQLL BZLF1 EBV PMID:34811538 tetramer-sort yes amplicon-seq effector memory T cells T1D T1D_4 chip0423_778992 PBMC +8202 CAVSRRK??gGYQKVTF TRAV8-6*01 TRAJ13*01 CASSLEYEQYF TRBV7-2*01 TRBJ2-7*01 HLA-A*02:01 B2M MHCI MVWGPDPLYV DUF5119 HomoSapiens PMID:34811538 tetramer-sort yes amplicon-seq Naive T cells healthy healthy_3 chip0423_511369 PBMC +8203 CAASGGFNTDKLVF TRAV29/DV5*01 TRAJ34*01 CASSSTSGRAAEQFF TRBV13*01 TRBJ2-1*01 HLA-A*02:01 B2M MHCI RGPGRAFVTI GP160 HIV-1 PMID:34811538 tetramer-sort yes amplicon-seq Naive T cells healthy healthy_3 chip0423_579148 PBMC +8205 CIVREGGGAVGLSF TRAV26-1*01 TRAJ45*01 CASSLAVGEGPQHF TRBV7-9*01 TRBJ1-5*01 HLA-B*08:01 B2M MHCI RAKFKQLL BZLF1 EBV PMID:34811538 tetramer-sort yes amplicon-seq effector T cells T1D T1D_4 chip0423_668896 PBMC +8206 CASSQLGGVYNEQFF TRBV7-9*01 TRBJ2-1*01 HLA-B*08:01 B2M MHCI RAKFKQLL BZLF1 EBV PMID:34811538 tetramer-sort yes amplicon-seq effector memory T cells T1D T1D_5 chip0423_607234 PBMC +8207 CVVSGRSNYQLIW TRAV10*01 TRAJ33*01 CASTGGAGGPRGYNEQFL TRBV6-2*01,TRBV6-3*01 TRBJ2-1*01 HLA-B*08:01 B2M MHCI YAYAKWKL ZNT8 HomoSapiens PMID:34811538 tetramer-sort yes amplicon-seq Naive T cells T1D T1D_4 chip0423_412959 PBMC +8208 CAVRVDYGLHFVF TRAV3*01 TRAJ26*01 HLA-B*08:01 B2M MHCI RAKFKQLL BZLF1 EBV PMID:34811538 tetramer-sort yes amplicon-seq effector T cells T1D T1D_5 chip0423_496143 PBMC +8209 CAPASGGNYIPTF TRAV24*01 TRAJ6*01 CASCRDGTYEQYF TRBV10-3*01 TRBJ2-7*01 HLA-A*01:01 B2M MHCI CTELKLSDY NP InfluenzaA PMID:34811538 tetramer-sort yes amplicon-seq transitional T cells between effector and memory populations healthy healthy_3 chip0423_131091 PBMC +8210 CAVSDGEGAQKLVF TRAV8-6*01 TRAJ54*01 CASSLTVLAGPNTEAFF TRBV7-3*01 TRBJ1-1*01 HLA-B*08:01 B2M MHCI RAKFKQLL BZLF1 EBV PMID:34811538 tetramer-sort yes amplicon-seq effector T cells T1D T1D_4 chip0423_17317 PBMC +8211 CASSDIREGQGEAFF TRBV10-2*01 TRBJ1-1*01 HLA-B*08:01 B2M MHCI QAKWRLQTL EBNA3A EBV PMID:34811538 tetramer-sort yes amplicon-seq central memory T cells T1D T1D_6 chip0423_365215 PBMC +8213 CILRDL??cGSALNF TRAV26-2*01 TRAJ41*01 CASSQLGEAKEGTEAFF TRBV11-1*01 TRBJ1-1*01 HLA-B*08:01 B2M MHCI RAKFKQLL BZLF1 EBV PMID:34811538 tetramer-sort yes amplicon-seq effector T cells T1D T1D_5 chip0423_178357 PBMC +8214 CASSDIREGQGEAFF TRBV10-2*01 TRBJ1-1*01 HLA-B*08:01 B2M MHCI QAKWRLQTL EBNA3A EBV PMID:34811538 tetramer-sort yes amplicon-seq transitional T cells between effector and memory populations T1D T1D_6 chip0423_173684 PBMC +8215 CATEGASGYSTLTF TRAV17*01 TRAJ11*01 CASSPQGGNYGYTF TRBV6-1*01 TRBJ1-2*01 HLA-A*02:01 B2M MHCI FLYALALLL LMP2 EBV PMID:34811538 tetramer-sort yes amplicon-seq effector memory T cells T1D T1D_4 chip0423_97117 PBMC +8216 CSVGTSYGYTF TRBV29-1*01 TRBJ1-2*01 HLA-B*08:01 B2M MHCI RAKFKQLL BZLF1 EBV PMID:34811538 tetramer-sort yes amplicon-seq effector T cells T1D T1D_5 chip0423_788762 PBMC +8217 CAGSHVSTPGGGYTF TRBV14*01 TRBJ1-2*01 HLA-B*08:01 B2M MHCI QAKWRLQTL EBNA3A EBV PMID:34811538 tetramer-sort yes amplicon-seq effector memory T cells T1D T1D_4 chip0423_510710 PBMC +8218 CAENSSGYALNF TRAV13-2*01 TRAJ41*01 CASRQGPSSYNEQFF TRBV4-1*01 TRBJ2-1*01 HLA-B*08:01 B2M MHCI MALWMRLL INS HomoSapiens PMID:34811538 tetramer-sort yes amplicon-seq Naive T cells T1D T1D_5 chip0423_23737 PBMC +8219 CAFGGYNKLIF TRAV24*01 TRAJ4*01 CASRQEMNTEAFF TRBV6-1*01 TRBJ1-1*01 HLA-A*02:01 B2M MHCI GILGFVFTL M1 InfluenzaA PMID:34811538 tetramer-sort yes amplicon-seq Naive T cells T1D T1D_6 chip0423_750452 PBMC +8220 SAGANNLFF TRAV12-2*01 TRAJ36*01 CASSLSSNEKLFF TRBV7-9*01 TRBJ1-4*01 HLA-A*02:01 B2M MHCI LLQEYNWEL GAD65 HomoSapiens PMID:34811538 tetramer-sort yes amplicon-seq Naive T cells T1D T1D_6 chip0423_333918 PBMC +8221 CAVWFS*Ltg??gaGSQGNLIF TRAV36/DV7*01 TRAJ42*01 HLA-A*01:01 B2M MHCI CTELKLSDY NP InfluenzaA PMID:34811538 tetramer-sort yes amplicon-seq transitional T cells between effector and memory populations healthy healthy_3 chip0423_125802 PBMC +8222 CASSSGLAGGSHTGELFF TRBV11-1*01 TRBJ2-2*01 HLA-B*08:01 B2M MHCI RAKFKQLL BZLF1 EBV PMID:34811538 tetramer-sort yes amplicon-seq effector memory T cells T1D T1D_5 chip0423_876620 PBMC +8223 CAAGAAGALRC TRAV17*01 TRAJ43*01 CASSYTLNSPLHF TRBV12-3*01,TRBV12-4*01 TRBJ1-6*01 HLA-A*02:01 B2M MHCI ALGIGILTV MART1 HomoSapiens PMID:34811538 tetramer-sort yes amplicon-seq Naive T cells T1D T1D_4 chip0423_659381 PBMC +8226 CALTTYGQDFVF TRAV38-1*01 TRAJ26*01 CSASRDSYEQYF TRBV20-1*01 TRBJ2-7*01 HLA-A*02:01 B2M MHCI YLLEMLWRL LMP1 EBV PMID:34811538 tetramer-sort yes amplicon-seq transitional T cells between effector and memory populations T1D T1D_4 chip0423_611052 PBMC +8227 CVVNNLDTGRRALTF TRAV12-1*01 TRAJ5*01 CASSDPRGSTDTQYF TRBV2*01 TRBJ2-3*01 HLA-A*02:01 B2M MHCI VLFGLGFAI IGRP HomoSapiens PMID:34811538 tetramer-sort yes amplicon-seq Naive T cells T1D T1D_4 chip0423_460907 PBMC +8228 CAMSGSSGSARQLTF TRAV12-3*01 TRAJ22*01 CATSDLRTANTGELFF TRBV24-1*01 TRBJ2-2*01 HLA-A*01:01 B2M MHCI GSHLVEALY INS HomoSapiens PMID:34811538 tetramer-sort yes amplicon-seq central memory T cells T1D T1D_6 chip0423_849691 PBMC +8230 CAVNPLRVGNLIF TRAV12-2*01 TRAJ42*01 CASSLVGESGGEGYTF TRBV11-2*01 TRBJ1-2*01 HLA-A*02:01 B2M MHCI LLAGIGTVPI PGT HomoSapiens PMID:34811538 tetramer-sort yes amplicon-seq Naive T cells T1D T1D_6 chip0423_154607 PBMC +8231 CAAGGNct??ccYDKVIS TRAV13-1*01 TRAJ50*01 CASQLAGGTGELFF TRBV24-1*01 TRBJ2-2*01 HLA-B*08:01 B2M MHCI RAKFKQLL BZLF1 EBV PMID:34811538 tetramer-sort yes amplicon-seq effector memory T cells T1D T1D_5 chip0423_121489 PBMC +8232 CIVREGGGAAGLPF TRAV26-1*01 TRAJ45*01 CASSLAVGEGPQHF TRBV7-9*01 TRBJ1-5*01 HLA-B*08:01 B2M MHCI RAKFKQLL BZLF1 EBV PMID:34811538 tetramer-sort yes amplicon-seq effector memory T cells T1D T1D_4 chip0423_607776 PBMC +8234 CASSQDRVKNEQFF TRBV14*01 TRBJ2-1*01 HLA-B*08:01 B2M MHCI ILKLQVFL IAPP HomoSapiens PMID:34811538 tetramer-sort yes amplicon-seq Naive T cells T1D T1D_6 chip0423_421931 PBMC +8236 CAASETSYDKVIF TRAV13-1*01 TRAJ50*01 CASSLAQVFNGYTF TRBV7-9*01 TRBJ1-2*01 HLA-B*08:01 B2M MHCI RAKFKQLL BZLF1 EBV PMID:34811538 tetramer-sort yes amplicon-seq effector memory T cells T1D T1D_5 chip0423_112420 PBMC +8237 CILVWF??tAWPLTF TRAV26-2*01 TRAJ22*01 CASSEEDGPQHF TRBV9*01 TRBJ1-5*01 HLA-A*01:01 B2M MHCI CTELKLSDY NP InfluenzaA PMID:34811538 tetramer-sort yes amplicon-seq transitional T cells between effector and memory populations healthy healthy_3 chip0423_863110 PBMC +8238 CARRFVVA??aAGGDTQYF TRBV7-9*01 TRBJ2-3*01 HLA-B*08:01 B2M MHCI RAKFKQLL BZLF1 EBV PMID:34811538 tetramer-sort yes amplicon-seq effector memory T cells T1D T1D_5 chip0423_819831 PBMC +8239 CAATETSYDKVIF TRAV13-1*01 TRAJ50*01 CASSPPGRNEKLFF TRBV12-3*01,TRBV12-4*01 TRBJ1-4*01 HLA-B*08:01 B2M MHCI RAKFKQLL BZLF1 EBV PMID:34811538 tetramer-sort yes amplicon-seq effector memory T cells T1D T1D_5 chip0423_280957 PBMC +8242 CATDAPGNNRLAF TRAV17*01 TRAJ7*01 HLA-B*08:01 B2M MHCI CPLSKILL LMP2A EBV PMID:34811538 tetramer-sort yes amplicon-seq Naive T cells T1D T1D_6 chip0423_585278 PBMC +8243 CASSLDGSGSYEQYF TRBV7-3*01 TRBJ2-7*01 HLA-A*01:01 B2M MHCI STNVGSNTY IAPP HomoSapiens PMID:34811538 tetramer-sort yes amplicon-seq Naive T cells T1D T1D_4 chip0423_7106 PBMC +8244 CPVGDGEGAQKLVF TRAV8-6*01 TRAJ54*01 CASSLTVLAGPNTEAFF TRBV7-3*01 TRBJ1-1*01 HLA-B*08:01 B2M MHCI RAKFKQLL BZLF1 EBV PMID:34811538 tetramer-sort yes amplicon-seq effector T cells T1D T1D_4 chip0423_787451 PBMC +8245 CASSLGDSNQPQHF TRBV5-1*01 TRBJ1-5*01 HLA-A*02:01 B2M MHCI LLIDLTSFL ZNT8 HomoSapiens PMID:34811538 tetramer-sort yes amplicon-seq Naive T cells T1D T1D_6 chip0423_734396 PBMC +8246 CALSETSYDKVIF TRAV9-2*01 TRAJ50*01 CASSPTTGKSSYNSPLHF TRBV11-1*01 TRBJ1-6*01 HLA-B*08:01 B2M MHCI RAKFKQLL BZLF1 EBV PMID:34811538 tetramer-sort yes amplicon-seq effector T cells T1D T1D_5 chip0423_635629 PBMC +8247 CNASDGDRGIYEQYF TRBV20-1*01 TRBJ2-7*01 HLA-A*02:01 B2M MHCI LLAGIGTVPI PGT HomoSapiens PMID:34811538 tetramer-sort yes amplicon-seq Naive T cells healthy healthy_4 chip0423_509043 PBMC +8248 CAMRE*tg??caGNMLTF TRAV12-3*01 TRAJ39*01 CASSGGGGGYTGAFF TRBV12-3*01,TRBV12-4*01 TRBJ1-1*01 HLA-B*08:01 B2M MHCI RAKFKQLL BZLF1 EBV PMID:34811538 tetramer-sort yes amplicon-seq effector memory T cells T1D T1D_5 chip0423_502314 PBMC +8249 CAASETSYDKVIF TRAV13-1*01 TRAJ50*01 CSVAQGSFGYTF TRBV29-1*01 TRBJ1-2*01 HLA-B*08:01 B2M MHCI RAKFKQLL BZLF1 EBV PMID:34811538 tetramer-sort yes amplicon-seq effector T cells T1D T1D_5 chip0423_753741 PBMC +8250 CASSLAVGEGPQHF TRBV7-9*01 TRBJ1-5*01 HLA-B*08:01 B2M MHCI RAKFKQLL BZLF1 EBV PMID:34811538 tetramer-sort yes amplicon-seq effector T cells T1D T1D_4 chip0423_702634 PBMC +8252 CASSDIREGQGEASF TRBV10-2*01 TRBJ1-1*01 HLA-B*08:01 B2M MHCI QAKWRLQTL EBNA3A EBV PMID:34811538 tetramer-sort yes amplicon-seq central memory T cells T1D T1D_6 chip0423_828866 PBMC +8253 CASSLAVGEGPQHF TRBV7-9*01 TRBJ1-5*01 HLA-B*08:01 B2M MHCI RAKFKQLL BZLF1 EBV PMID:34811538 tetramer-sort yes amplicon-seq effector memory T cells T1D T1D_4 chip0423_689269 PBMC +8255 CASSPTPPPVNQPQHF TRBV27*01 TRBJ1-5*01 HLA-B*08:01 B2M MHCI RAKFKQLL BZLF1 EBV PMID:34811538 tetramer-sort yes amplicon-seq effector memory T cells T1D T1D_5 chip0423_651997 PBMC +8256 CIVRAGGGAVGLAF TRAV26-1*01 TRAJ45*01 HLA-B*08:01 B2M MHCI RAKFKQLL BZLF1 EBV PMID:34811538 tetramer-sort yes amplicon-seq effector memory T cells T1D T1D_4 chip0423_351482 PBMC +8258 CASSDDGMNTEAFF TRBV10-2*01 TRBJ1-1*01 HLA-A*02:01 B2M MHCI CLGGLLTMV LMP2A EBV PMID:34811538 tetramer-sort yes amplicon-seq central memory T cells T1D T1D_4 chip0423_135943 PBMC +8259 CASSELt?gGSTPPP TRAV14/DV4*01 TRAJ11*01 CASSEMWGAPLHF TRBV2*01 TRBJ1-6*01 HLA-A*01:01 B2M MHCI CTELKLSDY NP InfluenzaA PMID:34811538 tetramer-sort yes amplicon-seq transitional T cells between effector and memory populations healthy healthy_3 chip0423_623328 PBMC +8260 CAVSRGYNKLIF TRAV12-2*01 TRAJ4*01 HLA-A*02:01 B2M MHCI LLAGIGTVPI PGT HomoSapiens PMID:34811538 tetramer-sort yes amplicon-seq Naive T cells T1D T1D_4 chip0423_319440 PBMC +8261 CSVGTGGTNEKLFF TRBV29-1*01 TRBJ1-4*01 HLA-A*02:01 B2M MHCI GLCTLVAML BLMF1 EBV PMID:34811538 tetramer-sort yes amplicon-seq effector memory T cells T1D T1D_4 chip0423_148104 PBMC +8262 CASSFSGLGQPQHF TRBV5-6*01 TRBJ1-5*01 HLA-A*01:01 B2M MHCI VTDAAHLLI ZNT8 HomoSapiens PMID:34811538 tetramer-sort yes amplicon-seq Naive T cells T1D T1D_5 chip0423_67387 PBMC +8264 CAALETSYDKVIF TRAV13-1*01 TRAJ50*01 HLA-B*08:01 B2M MHCI RAKFKQLL BZLF1 EBV PMID:34811538 tetramer-sort yes amplicon-seq effector T cells T1D T1D_5 chip0423_595840 PBMC +8266 CAGGETSYDKVIF TRAV13-1*01 TRAJ50*01 CASSSLGTGDTEAFF TRBV7-9*01 TRBJ1-1*01 HLA-B*08:01 B2M MHCI RAKFKQLL BZLF1 EBV PMID:34811538 tetramer-sort yes amplicon-seq effector T cells T1D T1D_5 chip0423_492795 PBMC +8267 CAWSVGVGQPQHF TRBV30*01 TRBJ1-5*01 HLA-A*02:01 B2M MHCI LLAGIGTVPI PGT HomoSapiens PMID:34811538 tetramer-sort yes amplicon-seq transitional T cells between effector and memory populations T1D T1D_4 chip0423_277149 PBMC +8268 CSARFFSDRTGYEQYF TRBV20-1*01 TRBJ2-7*01 HLA-A*01:01 B2M MHCI CTELKLSDY NP InfluenzaA PMID:34811538 tetramer-sort yes amplicon-seq effector T cells healthy healthy_3 chip0423_621328 PBMC +8269 CAVTRSNFGNEKLTF TRAV12-2*01 TRAJ48*01 CASRLVVAGPSSFNEQFF TRBV5-6*01 TRBJ2-1*01 HLA-A*02:01 B2M MHCI LLAGIGTVPI PGT HomoSapiens PMID:34811538 tetramer-sort yes amplicon-seq Naive T cells healthy healthy_3 chip0423_363790 PBMC +8270 CAGARSPAYLFF TRAV27*01 TRAJ42*01 CASRTRSSYEQCF TRBV19*01 TRBJ2-7*01 HLA-A*02:01 B2M MHCI GILGFVFTL M1 InfluenzaA PMID:34811538 tetramer-sort yes amplicon-seq transitional T cells between effector and memory populations healthy healthy_3 chip0423_63668 PBMC +8273 CAVNPDARLMF TRAV12-2*01 TRAJ31*01 HLA-A*01:01 B2M MHCI LVSDGGPNLY PB1 InfluenzaA PMID:34811538 tetramer-sort yes amplicon-seq central memory T cells healthy healthy_3 chip0423_214331 PBMC +8274 CVVSGGSYIPTF TRAV8-2*01 TRAJ6*01 CASSLNQGNAHTGELFF TRBV7-3*01 TRBJ2-2*01 HLA-A*02:01 B2M MHCI LVGPTPVNI POL HIV-1 PMID:34811538 tetramer-sort yes amplicon-seq Naive T cells T1D T1D_6 chip0423_201151 PBMC +8276 CAAGQLVgt?VGADGLTF TRAV23/DV6*01 TRAJ45*01 SASSLGPPYEQYF TRBV7-8*01 TRBJ2-7*01 HLA-B*08:01 B2M MHCI FLRGRAYGL EBNA3A EBV PMID:34811538 tetramer-sort yes amplicon-seq effector memory T cells T1D T1D_6 chip0423_502717 PBMC +8277 CAVNSGNTPLVF TRAV1-2*01 TRAJ29*01 CASSQVNNPGDGYTF TRBV14*01 TRBJ1-2*01 HLA-B*08:01 B2M MHCI QAKWRLQTL EBNA3A EBV PMID:34811538 tetramer-sort yes amplicon-seq effector memory T cells T1D T1D_4 chip0423_427852 PBMC +8278 CILPLAGGTSYGKLTF TRAV26-2*01 TRAJ52*01 CASSLGQAYEQYF TRBV7-8*01 TRBJ2-7*01 HLA-B*08:01 B2M MHCI FLRGRAYGL EBNA3A EBV PMID:34811538 tetramer-sort yes amplicon-seq effector T cells T1D T1D_6 chip0423_723577 PBMC +8279 CAVRHTGKLIF TRAV8-1*01 TRAJ37*01 CASSQGLGNEQFF TRBV3-1*01 TRBJ2-1*01 HLA-A*02:01 B2M MHCI YVLDHLIVV BRLF1 EBV PMID:34811538 tetramer-sort yes amplicon-seq Naive T cells healthy healthy_3 chip0423_471255 PBMC +8280 CASSLAGREGTQYF TRBV11-3*01,TRBV11-2*01 TRBJ2-3*01 HLA-B*08:01 B2M MHCI ELRSRYWAI NP InfluenzaA PMID:34811538 tetramer-sort yes amplicon-seq transitional T cells between effector and memory populations T1D T1D_6 chip0423_412344 PBMC +8281 CAASETSYDKVIF TRAV13-1*01 TRAJ50*01 HLA-B*08:01 B2M MHCI RAKFKQLL BZLF1 EBV PMID:34811538 tetramer-sort yes amplicon-seq effector memory T cells healthy healthy_4 chip0423_375994 PBMC +8282 CASSPVNNPGGGDAF TRBV14*01 TRBJ1-2*01 HLA-B*08:01 B2M MHCI QAKWRLQTL EBNA3A EBV PMID:34811538 tetramer-sort yes amplicon-seq effector memory T cells T1D T1D_4 chip0423_127253 PBMC +8283 CAGPRIDQGGKLIF TRAV12-3*01 TRAJ23*01 CASSYVRNTEAFF TRBV6-2*01,TRBV6-3*01 TRBJ1-1*01 HLA-B*08:01 B2M MHCI EIRTQYEAM GFAP HomoSapiens PMID:34811538 tetramer-sort yes amplicon-seq Naive T cells T1D T1D_5 chip0423_495020 PBMC +8284 CASSSGQAYEQYF TRBV7-8*01 TRBJ2-7*01 HLA-B*08:01 B2M MHCI FLRGRAYGL EBNA3A EBV PMID:34811538 tetramer-sort yes amplicon-seq effector memory T cells healthy healthy_4 chip0423_326640 PBMC +8285 CAGNYGGSQGNLIF TRAV25*01 TRAJ42*01 CASSLRSTGELFF TRBV19*01 TRBJ2-2*01 HLA-A*02:01 B2M MHCI GILGFVFTL M1 InfluenzaA PMID:34811538 tetramer-sort yes amplicon-seq transitional T cells between effector and memory populations healthy healthy_3 chip0423_845463 PBMC +8286 CASSTRARWDTQYF TRBV6-1*01 TRBJ2-3*01 HLA-B*08:01 B2M MHCI MALWMRLL INS HomoSapiens PMID:34811538 tetramer-sort yes amplicon-seq Naive T cells T1D T1D_5 chip0423_610471 PBMC +8287 CSVGTADGYTF TRBV29-1*01 TRBJ1-2*01 HLA-B*08:01 B2M MHCI RAKFKQLL BZLF1 EBV PMID:34811538 tetramer-sort yes amplicon-seq effector memory T cells T1D T1D_5 chip0423_394014 PBMC +8288 CALTDSWGKLQF TRAV12-2*01 TRAJ24*01 HLA-A*02:01 B2M MHCI VMNILLQYV GAD65 HomoSapiens PMID:34811538 tetramer-sort yes amplicon-seq effector T cells healthy healthy_3 chip0423_424919 PBMC +8289 CSAGRDGTNEKLFF TRBV29-1*01 TRBJ1-4*01 HLA-A*02:01 B2M MHCI GLCTLVAML BLMF1 EBV PMID:34811538 tetramer-sort yes amplicon-seq effector T cells T1D T1D_6 chip0423_302601 PBMC +8290 CASSSSSYNEQFF TRBV19*01 TRBJ2-1*01 HLA-A*01:01 B2M MHCI CTELKLSDY NP InfluenzaA PMID:34811538 tetramer-sort yes amplicon-seq transitional T cells between effector and memory populations T1D T1D_5 chip0423_670803 PBMC +8291 CASNTGTGLGEQFF TRBV25-1*01 TRBJ2-1*01 HLA-A*02:01 B2M MHCI GILGFVFTL M1 InfluenzaA PMID:34811538 tetramer-sort yes amplicon-seq central memory T cells healthy healthy_4 chip0423_526307 PBMC +8292 CAVQNDMRF TRAV12-2*01 TRAJ43*01 HLA-A*02:01 B2M MHCI LAVDGVLSV ZNT8 HomoSapiens PMID:34811538 tetramer-sort yes amplicon-seq Naive T cells T1D T1D_4 chip0423_883970 PBMC +8293 CASSVLGWGARHTEAFF TRBV19*01 TRBJ1-1*01 HLA-A*02:01 B2M MHCI LLMEGVPKSL ZNT8 HomoSapiens PMID:34811538 tetramer-sort yes amplicon-seq Naive T cells T1D T1D_6 chip0423_500582 PBMC +8295 CAASETSYDKVIF TRAV13-1*01 TRAJ50*01 CASSWLGDRYNSPLHF TRBV7-9*01 TRBJ1-6*01 HLA-B*08:01 B2M MHCI RAKFKQLL BZLF1 EBV PMID:34811538 tetramer-sort yes amplicon-seq effector T cells T1D T1D_5 chip0423_447785 PBMC +8296 CASSQRDScc?KKFRAVQYF TRBV4-3*01 TRBJ2-4*01 HLA-A*01:01 B2M MHCI VTDAAHLLI ZNT8 HomoSapiens PMID:34811538 tetramer-sort yes amplicon-seq Naive T cells T1D T1D_4 chip0423_408869 PBMC +8297 CASSQDNLAGAPYNEQFF TRBV4-2*01 TRBJ2-1*01 HLA-A*02:01 B2M MHCI ALAGIGILTV MART1 HomoSapiens PMID:34811538 tetramer-sort yes amplicon-seq Naive T cells healthy healthy_4 chip0423_327660 PBMC +8298 CAMSGSNFGNEKLTF TRAV12-3*01 TRAJ48*01 HLA-A*02:01 B2M MHCI LLAGIGTVPI PGT HomoSapiens PMID:34811538 tetramer-sort yes amplicon-seq Naive T cells T1D T1D_4 chip0423_224543 PBMC +8299 CASSSEQGPIAGELFF TRBV5-1*01 TRBJ2-2*01 HLA-B*08:01 B2M MHCI RAKFKQLL BZLF1 EBV PMID:34811538 tetramer-sort yes amplicon-seq effector memory T cells T1D T1D_5 chip0423_828528 PBMC +8300 CASSLIPGTYEQYF TRBV27*01 TRBJ2-7*01 HLA-A*01:01 B2M MHCI VSATAGTTVY GAD2 HomoSapiens PMID:34811538 tetramer-sort yes amplicon-seq Naive T cells T1D T1D_6 chip0423_280302 PBMC +8301 CASSIRSSYEQYF TRBV19*01 TRBJ2-7*01 HLA-A*02:01 B2M MHCI GILGFVFTL M1 InfluenzaA PMID:34811538 tetramer-sort yes amplicon-seq transitional T cells between effector and memory populations T1D T1D_6 chip0423_784274 PBMC +8302 CASSIRSSYEQYF TRBV19*01 TRBJ2-7*01 HLA-A*02:01 B2M MHCI GILGFVFTL M1 InfluenzaA PMID:34811538 tetramer-sort yes amplicon-seq transitional T cells between effector and memory populations T1D T1D_6 chip0423_784535 PBMC +8303 CASSLTVLAGPNTEAFF TRBV7-3*01 TRBJ1-1*01 HLA-B*08:01 B2M MHCI RAKFKQLL BZLF1 EBV PMID:34811538 tetramer-sort yes amplicon-seq effector memory T cells T1D T1D_4 chip0423_584470 PBMC +8304 CAMSAGNFGNEKLTF TRAV12-3*01 TRAJ48*01 CASSLLSEDPGRDYGYTF TRBV11-3*01 TRBJ1-2*01 HLA-A*02:01 B2M MHCI LLAGIGTVPI PGT HomoSapiens PMID:34811538 tetramer-sort yes amplicon-seq Naive T cells T1D T1D_4 chip0423_264932 PBMC +8305 CASSQVNNPGDGYTF TRBV14*01 TRBJ1-2*01 HLA-B*08:01 B2M MHCI QAKWRLQTL EBNA3A EBV PMID:34811538 tetramer-sort yes amplicon-seq effector memory T cells T1D T1D_4 chip0423_188811 PBMC +8306 CAVSNTGTQFYF TRAV12-2*01 TRAJ49*01 CASSLGEIGYTF TRBV7-9*01 TRBJ1-2*01 HLA-A*02:01 B2M MHCI LLAGIGTVPI PGT HomoSapiens PMID:34811538 tetramer-sort yes amplicon-seq Naive T cells T1D T1D_6 chip0423_393406 PBMC +8307 CAVNGGARLMF TRAV8-1*01 TRAJ31*01 CAERWGGQEQFF TRBV19*01 TRBJ2-1*01 HLA-A*02:01 B2M MHCI ILGALLSIL ZNT8 HomoSapiens PMID:34811538 tetramer-sort yes amplicon-seq Naive T cells T1D T1D_6 chip0423_425337 PBMC +8308 CALTTYGQNFVF TRAV38-1*01 TRAJ26*01 CSASRDSYEQYF TRBV20-1*01 TRBJ2-7*01 HLA-A*02:01 B2M MHCI YLLEMLWRL LMP1 EBV PMID:34811538 tetramer-sort yes amplicon-seq effector memory T cells T1D T1D_4 chip0423_815890 PBMC +8309 CASQGGSQGNLIF TRAV20*01 TRAJ42*01 CASSLGGQTETQYF TRBV13*01 TRBJ2-5*01 HLA-A*02:01 B2M MHCI TLLANVTAV VP6 RotavirusA PMID:34811538 tetramer-sort yes amplicon-seq transitional T cells between effector and memory populations T1D T1D_6 chip0423_762721 PBMC +8311 CASTLPVGEGPQQF TRBV7-9*01 TRBJ1-5*01 HLA-B*08:01 B2M MHCI RAKFKQLL BZLF1 EBV PMID:34811538 tetramer-sort yes amplicon-seq effector memory T cells T1D T1D_4 chip0423_261528 PBMC +8313 CASSVSGAPYEQYF TRBV9*01 TRBJ2-7*01 HLA-B*08:01 B2M MHCI FLRGRAYGL EBNA3A EBV PMID:34811538 tetramer-sort yes amplicon-seq effector memory T cells T1D T1D_6 chip0423_753120 PBMC +8314 CAVERWWta??ctSYGKLTF TRAV36/DV7*01 TRAJ52*01 HLA-B*08:01 B2M MHCI RAKFKQLL BZLF1 EBV PMID:34811538 tetramer-sort yes amplicon-seq effector memory T cells T1D T1D_5 chip0423_551582 PBMC +8315 CAVSDSGGPGGSEKLVF TRAV8-4*01 TRAJ57*01 HLA-B*08:01 B2M MHCI FQQDKHYDL GAD2 HomoSapiens PMID:34811538 tetramer-sort yes amplicon-seq Naive T cells T1D T1D_5 chip0423_530120 PBMC +8316 CAATETSYDKVIF TRAV13-1*01 TRAJ50*01 CASSPPGSNEKLFF TRBV7-9*01 TRBJ1-4*01 HLA-B*08:01 B2M MHCI RAKFKQLL BZLF1 EBV PMID:34811538 tetramer-sort yes amplicon-seq effector memory T cells T1D T1D_5 chip0423_325706 PBMC +8317 CAVNGYGGSQGNLIF TRAV12-2*01 TRAJ42*01 CASSLSRLGSPLHF TRBV28*01 TRBJ1-6*01 HLA-A*02:01 B2M MHCI LLAGIGTVPI PGT HomoSapiens PMID:34811538 tetramer-sort yes amplicon-seq Naive T cells T1D T1D_6 chip0423_631884 PBMC +8318 CASSLLGSVDTEAFF TRBV7-9*01 TRBJ1-1*01 HLA-B*08:01 B2M MHCI RAKFKQLL BZLF1 EBV PMID:34811538 tetramer-sort yes amplicon-seq effector memory T cells T1D T1D_5 chip0423_662608 PBMC +8319 CAEMETSYDKVIF TRAV13-2*01 TRAJ50*01 HLA-B*08:01 B2M MHCI RAKFKQLL BZLF1 EBV PMID:34811538 tetramer-sort yes amplicon-seq effector memory T cells T1D T1D_5 chip0423_408585 PBMC +8320 RAVSGTSYGQPSF TRAV13-2*01 TRAJ52*01 CSVPELAWQTQYF TRBV29-1*01 TRBJ2-5*01 HLA-B*08:01 B2M MHCI ILKLQVFL IAPP HomoSapiens PMID:34811538 tetramer-sort yes amplicon-seq Naive T cells T1D T1D_5 chip0423_13204 PBMC +8321 CAMRLSNFGNEKLTF TRAV12-3*01 TRAJ48*01 CSAGRDRKISGARTGELFF TRBV20-1*01 TRBJ2-2*01 HLA-A*02:01 B2M MHCI LLAGIGTVPI PGT HomoSapiens PMID:34811538 tetramer-sort yes amplicon-seq Naive T cells healthy healthy_3 chip0423_836985 PBMC +8322 CASSLGPVVLHEQYF TRBV7-2*01 TRBJ2-7*01 HLA-B*08:01 B2M MHCI YLKTNLFL G6PC2 HomoSapiens PMID:34811538 tetramer-sort yes amplicon-seq Naive T cells T1D T1D_6 chip0423_231812 PBMC +8323 CAVIcg?GKSTF TRAV1-1*01 TRAJ27*01 CASQLAGGTGGLFF TRBV24-1*01 TRBJ2-2*01 HLA-B*08:01 B2M MHCI RAKFKQLL BZLF1 EBV PMID:34811538 tetramer-sort yes amplicon-seq effector T cells T1D T1D_5 chip0423_230502 PBMC +8324 CAMRAGGFKTIF TRAV14/DV4*01 TRAJ9*01 CASSFTGGHGYTF TRBV12-3*01,TRBV12-4*01 TRBJ1-2*01 HLA-A*02:01 B2M MHCI GIIYIIYKL P3A CoxsackievirusB PMID:34811538 tetramer-sort yes amplicon-seq Naive T cells T1D T1D_4 chip0423_193289 PBMC +8325 CAMRDGEGQGFSFIF TRAV14/DV4*01 TRAJ11*01 CASSSAGGGPEQYF TRBV7-9*01 TRBJ2-7*01 HLA-B*08:01 B2M MHCI RAKFKQLL BZLF1 EBV PMID:34811538 tetramer-sort yes amplicon-seq effector T cells T1D T1D_5 chip0423_413408 PBMC +8327 CSAKETSYDKVIF TRAV13-1*01 TRAJ50*01 CASSRLGQETATDTQYF TRBV11-1*01 TRBJ2-3*01 HLA-B*08:01 B2M MHCI RAKFKQLL BZLF1 EBV PMID:34811538 tetramer-sort yes amplicon-seq effector memory T cells T1D T1D_5 chip0423_335253 PBMC +8329 CASSPLLAAQGYEQYF TRBV19*01 TRBJ2-7*01 HLA-A*01:01 B2M MHCI CTELKLSDY NP InfluenzaA PMID:34811538 tetramer-sort yes amplicon-seq transitional T cells between effector and memory populations healthy healthy_3 chip0423_715834 PBMC +8330 CILPLAGGTNYGKLTF TRAV26-2*01 TRAJ52*01 CASSLGQAYEQYF TRBV7-8*01 TRBJ2-7*01 HLA-B*08:01 B2M MHCI FLRGRAYGL EBNA3A EBV PMID:34811538 tetramer-sort yes amplicon-seq effector T cells T1D T1D_6 chip0423_521800 PBMC +8331 CVVNMNARLLF TRAV12-1*01 TRAJ31*01 CASSQEWAGQGYEQYF TRBV4-3*01 TRBJ2-7*01 HLA-A*02:01 B2M MHCI ALGIGILTV MART1 HomoSapiens PMID:34811538 tetramer-sort yes amplicon-seq Naive T cells T1D T1D_6 chip0423_462460 PBMC +8332 CVVNGENARLMF TRAV12-1*01 TRAJ31*01 CASSEMWGAPLHF TRBV2*01 TRBJ1-6*01 HLA-A*01:01 B2M MHCI CTELKLSDY NP InfluenzaA PMID:34811538 tetramer-sort yes amplicon-seq transitional T cells between effector and memory populations healthy healthy_3 chip0423_2275 PBMC +8333 CAMRAIEGANNLFF TRAV14/DV4*01 TRAJ36*01 HLA-B*08:01 B2M MHCI RAKFKQLL BZLF1 EBV PMID:34811538 tetramer-sort yes amplicon-seq effector T cells T1D T1D_5 chip0423_173168 PBMC +8334 CAMRDGGGSQGNLIF TRAV14/DV4*01 TRAJ42*01 CASSTRASQPQHF TRBV19*01 TRBJ1-5*01 HLA-A*02:01 B2M MHCI GILGFVFTL M1 InfluenzaA PMID:34811538 tetramer-sort yes amplicon-seq transitional T cells between effector and memory populations T1D T1D_6 chip0423_104595 PBMC +8335 CASSLTVLAGPNTEAFF TRBV7-3*01 TRBJ1-1*01 HLA-B*08:01 B2M MHCI RAKFKQLL BZLF1 EBV PMID:34811538 tetramer-sort yes amplicon-seq effector memory T cells T1D T1D_4 chip0423_287525 PBMC +8336 CAYYIGNNARLMF TRAV24*01 TRAJ31*01 CASSPSGTGGNEQFS TRBV19*01 TRBJ2-1*01 HLA-A*02:01 B2M MHCI GILGFVFTL M1 InfluenzaA PMID:34811538 tetramer-sort yes amplicon-seq Naive T cells healthy healthy_4 chip0423_229908 PBMC +8337 CAAQETSYDKVIF TRAV13-1*01 TRAJ50*01 CASTQVDRPNYGYTF TRBV7-9*01 TRBJ1-2*01 HLA-B*08:01 B2M MHCI RAKFKQLL BZLF1 EBV PMID:34811538 tetramer-sort yes amplicon-seq effector T cells T1D T1D_5 chip0423_98753 PBMC +8338 CASIGLAPETQYF TRBV2*01 TRBJ2-5*01 HLA-B*08:01 B2M MHCI YAYAKWKL ZNT8 HomoSapiens PMID:34811538 tetramer-sort yes amplicon-seq Naive T cells T1D T1D_4 chip0423_847125 PBMC +8339 CSVGTGGTNEKLFF TRBV29-1*01 TRBJ1-4*01 HLA-A*02:01 B2M MHCI GLCTLVAML BLMF1 EBV PMID:34811538 tetramer-sort yes amplicon-seq effector memory T cells T1D T1D_6 chip0423_248998 PBMC +8340 CAMSLSNFGLECLSF TRAV12-3*01 TRAJ48*01 CASRGDGRGRIPYEQYF TRBV27*01 TRBJ2-7*01 HLA-A*02:01 B2M MHCI LLAGIGTVPI PGT HomoSapiens PMID:34811538 tetramer-sort yes amplicon-seq Naive T cells T1D T1D_4 chip0423_677162 PBMC +8341 CAVRDIHTGGFKTIF TRAV3*01 TRAJ9*01 CASSARDDYDEQYF TRBV9*01 TRBJ2-7*01 HLA-A*02:01 B2M MHCI GILGFVFTL M1 InfluenzaA PMID:34811538 tetramer-sort yes amplicon-seq transitional T cells between effector and memory populations T1D T1D_6 chip0423_642287 PBMC +8342 CASQLAGGTGELFF TRBV24-1*01 TRBJ2-2*01 HLA-B*08:01 B2M MHCI RAKFKQLL BZLF1 EBV PMID:34811538 tetramer-sort yes amplicon-seq effector memory T cells T1D T1D_5 chip0423_6655 PBMC +8343 CIVREGGGADGLTF TRAV26-1*01 TRAJ45*01 CASSLAVGEGPQHF TRBV7-9*01 TRBJ1-5*01 HLA-B*08:01 B2M MHCI RAKFKQLL BZLF1 EBV PMID:34811538 tetramer-sort yes amplicon-seq effector memory T cells T1D T1D_4 chip0423_640484 PBMC +8344 CATRGLVTLEAQYC TRBV24-1*01 TRBJ2-7*01 HLA-A*01:01 B2M MHCI LTSLTILQLY G6PC2 HomoSapiens PMID:34811538 tetramer-sort yes amplicon-seq Naive T cells T1D T1D_6 chip0423_166531 PBMC +8345 CALSEYTGNQFYF TRAV19*01 TRAJ49*01 CASSIGAGAYEQYF TRBV19*01 TRBJ2-7*01 HLA-A*01:01 B2M MHCI GSHLVEALY INS HomoSapiens PMID:34811538 tetramer-sort yes amplicon-seq transitional T cells between effector and memory populations T1D T1D_6 chip0423_339781 PBMC +8346 CASRSPSGTNTGELFF TRBV28*01 TRBJ2-2*01 HLA-A*02:01 B2M MHCI ALAGIGILTV MART1 HomoSapiens PMID:34811538 tetramer-sort yes amplicon-seq Naive T cells healthy healthy_3 chip0423_855343 PBMC +8347 CAVKEGGELIF TRAV8-1*01 TRAJ23*01 CASSQMSDTQYF TRBV6-2*01,TRBV6-3*01 TRBJ2-3*01 HLA-A*02:01 B2M MHCI YVLDHLIVV BRLF1 EBV PMID:34811538 tetramer-sort yes amplicon-seq effector T cells healthy healthy_3 chip0423_826690 PBMC +8348 CAVGEGF TRAV12-2*01 TRAJ37*01 CASRRFGAEPYF TRBV6-2*01,TRBV6-3*01 TRBJ2-7*01 HLA-A*02:01 B2M MHCI ALAGIGILTV MART1 HomoSapiens PMID:34811538 tetramer-sort yes amplicon-seq Naive T cells T1D T1D_4 chip0423_767675 PBMC +8349 CAVNMIGRGSTLGRLYL TRAV12-2*01 TRAJ18*01 CSASIGVGGAGEQFF TRBV20-1*01 TRBJ2-1*01 HLA-B*08:01 B2M MHCI RPIIRPATL NP InfluenzaA PMID:34811538 tetramer-sort yes amplicon-seq central memory T cells T1D T1D_6 chip0423_759384 PBMC +8350 CAAFGGGADGLTF TRAV29/DV5*01 TRAJ45*01 CASSLVPSGGPVSTDTQYF TRBV11-3*01 TRBJ2-3*01 HLA-A*02:01 B2M MHCI GILGFVFTL M1 InfluenzaA PMID:34811538 tetramer-sort yes amplicon-seq transitional T cells between effector and memory populations T1D T1D_4 chip0423_599632 PBMC +8351 CAALETSYDKVIF TRAV13-1*01 TRAJ50*01 CASSPDGSTGELFF TRBV12-3*01,TRBV12-4*01 TRBJ2-2*01 HLA-B*08:01 B2M MHCI RAKFKQLL BZLF1 EBV PMID:34811538 tetramer-sort yes amplicon-seq effector memory T cells T1D T1D_5 chip0423_275364 PBMC +8353 CASSQPGREETQYF TRBV4-2*01 TRBJ2-5*01 HLA-B*08:01 B2M MHCI ILKGKFQTA NP InfluenzaA PMID:34811538 tetramer-sort yes amplicon-seq Naive T cells T1D T1D_5 chip0423_575656 PBMC +8354 CARRGGTYNEQFF TRBV2*01 TRBJ2-1*01 HLA-A*02:01 B2M MHCI CINGVCWTV NS3 HCV PMID:34811538 tetramer-sort yes amplicon-seq Naive T cells healthy healthy_3 chip0423_553815 PBMC +8355 CALSGSSASKIIF TRAV14/DV4*01 TRAJ3*01 HLA-B*08:01 B2M MHCI RAKFKQLL BZLF1 EBV PMID:34811538 tetramer-sort yes amplicon-seq effector memory T cells T1D T1D_4 chip0423_548412 PBMC +8356 CAFMNPALPGNEYFTF TRAV38-1*01 TRAJ48*01 CASSGTat??tcTDTQYF TRBV5-6*01 TRBJ2-3*01 HLA-A*02:01 B2M MHCI RLLYPDYQI ZNT8 HomoSapiens PMID:34811538 tetramer-sort yes amplicon-seq Naive T cells healthy healthy_3 chip0423_395331 PBMC +8357 CAVQAAG??cTGHRFCF TRAV20*01 TRAJ49*01 CASSPLLATQGYEQYF TRBV19*01 TRBJ2-7*01 HLA-A*01:01 B2M MHCI CTELKLSDY NP InfluenzaA PMID:34811538 tetramer-sort yes amplicon-seq transitional T cells between effector and memory populations healthy healthy_3 chip0423_683706 PBMC +8358 CAASEGQFFF TRAV29/DV5*01 TRAJ49*01 CASSFAGSYERYF TRBV7-9*01 TRBJ2-7*01 HLA-A*01:01 B2M MHCI LTSFLLSLF ZNT8 HomoSapiens PMID:34811538 tetramer-sort yes amplicon-seq Naive T cells T1D T1D_4 chip0423_718751 PBMC +8359 CAVSYTGNQFYF TRAV8-6*01 TRAJ49*01 CASSQELLNTEAFF TRBV4-2*01 TRBJ1-1*01 HLA-A*02:01 B2M MHCI ALAGIGILTV MART1 HomoSapiens PMID:34811538 tetramer-sort yes amplicon-seq Naive T cells T1D T1D_6 chip0423_500912 PBMC +8360 CASSYSRTDTQYF TRBV6-5*01 TRBJ2-3*01 HLA-A*02:01 B2M MHCI KLVALGINNV POL HCV PMID:34811538 tetramer-sort yes amplicon-seq Naive T cells healthy healthy_3 chip0423_272136 PBMC +8361 CAASETSYDKVIF TRAV13-1*01 TRAJ50*01 CASSPLGAGPTDTQYF TRBV7-9*01 TRBJ2-3*01 HLA-B*08:01 B2M MHCI RAKFKQLL BZLF1 EBV PMID:34811538 tetramer-sort yes amplicon-seq effector memory T cells T1D T1D_5 chip0423_232297 PBMC +8362 CAGAEGGSQGNLIF TRAV27*01 TRAJ42*01 CASSVRa?gHRGAVF TRBV19*01 TRBJ2-2*01 HLA-A*02:01 B2M MHCI GILGFVFTL M1 InfluenzaA PMID:34811538 tetramer-sort yes amplicon-seq transitional T cells between effector and memory populations T1D T1D_4 chip0423_485601 PBMC +8363 CASSLTGTREAFF TRBV7-9*01 TRBJ1-1*01 HLA-B*08:01 B2M MHCI RAKFKQLL BZLF1 EBV PMID:34811538 tetramer-sort yes amplicon-seq effector memory T cells T1D T1D_5 chip0423_445744 PBMC +8364 CASSDGTSGFDEQFF TRBV12-3*01,TRBV12-4*01 TRBJ2-1*01 HLA-A*02:01 B2M MHCI VMNILLQYV GAD65 HomoSapiens PMID:34811538 tetramer-sort yes amplicon-seq Naive T cells T1D T1D_4 chip0423_354368 PBMC +8365 CALVNYGGSQGNLIF TRAV19*01 TRAJ42*01 CAVWRDGAYEQYF TRBV28*01 TRBJ2-7*01 HLA-A*02:01 B2M MHCI YLLEMLWRL LMP1 EBV PMID:34811538 tetramer-sort yes amplicon-seq transitional T cells between effector and memory populations T1D T1D_4 chip0423_203436 PBMC +8366 CASSFGVGDTEETQYF TRBV5-4*01 TRBJ2-5*01 HLA-A*01:01 B2M MHCI CTELKLSDY NP InfluenzaA PMID:34811538 tetramer-sort yes amplicon-seq transitional T cells between effector and memory populations healthy healthy_3 chip0423_807660 PBMC +8367 CIVREGGGADGLTF TRAV26-1*01 TRAJ45*01 CASSLAVGEGPQHF TRBV7-9*01 TRBJ1-5*01 HLA-B*08:01 B2M MHCI RAKFKQLL BZLF1 EBV PMID:34811538 tetramer-sort yes amplicon-seq effector T cells T1D T1D_4 chip0423_590676 PBMC +8368 CASSEGLGGKNIQYF TRBV2*01 TRBJ2-4*01 HLA-B*08:01 B2M MHCI LRLRLDQL GFAP HomoSapiens PMID:34811538 tetramer-sort yes amplicon-seq Naive T cells healthy healthy_4 chip0423_450206 PBMC +8369 CASSPPGQNEKLFF TRAV36/DV7*01 TRAJ5*01 CASSPPGQNEKLFF TRBV5-4*01 TRBJ1-4*01 HLA-B*08:01 B2M MHCI RAKFKQLL BZLF1 EBV PMID:34811538 tetramer-sort yes amplicon-seq effector memory T cells T1D T1D_5 chip0423_511582 PBMC +8370 CASTQVDRPNYGYTF TRBV7-9*01 TRBJ1-2*01 HLA-B*08:01 B2M MHCI RAKFKQLL BZLF1 EBV PMID:34811538 tetramer-sort yes amplicon-seq effector T cells T1D T1D_5 chip0423_434063 PBMC +8371 CIVREGGDADGLTF TRAV26-1*01 TRAJ45*01 CASSLAVGEGPQHF TRBV7-9*01 TRBJ1-5*01 HLA-B*08:01 B2M MHCI RAKFKQLL BZLF1 EBV PMID:34811538 tetramer-sort yes amplicon-seq effector memory T cells T1D T1D_4 chip0423_419457 PBMC +8372 CAENLGF TRAV13-2*01 TRAJ36*01 CASSIGGGLNTEAFF TRBV19*01 TRBJ1-1*01 HLA-B*08:01 B2M MHCI HLKRNIVV GFAP HomoSapiens PMID:34811538 tetramer-sort yes amplicon-seq Naive T cells T1D T1D_6 chip0423_800236 PBMC +8373 CASESIPTGELFF TRBV5-4*01 TRBJ2-2*01 HLA-A*02:01 B2M MHCI LLFNILGGWV NS4B HCV PMID:34811538 tetramer-sort yes amplicon-seq Naive T cells healthy healthy_3 chip0423_628957 PBMC +8374 CIVREGGGADGLTF TRAV26-1*01 TRAJ45*01 CASSLAVGEGPQHF TRBV7-9*01 TRBJ1-5*01 HLA-B*08:01 B2M MHCI RAKFKQLL BZLF1 EBV PMID:34811538 tetramer-sort yes amplicon-seq effector memory T cells T1D T1D_4 chip0423_459241 PBMC +8375 CAPLGG??aAQKLVF TRAV17*01 TRAJ54*01 CASSQSPGLAWETQYF TRBV2*01 TRBJ2-5*01 HLA-B*08:01 B2M MHCI ILKGKFQTA NP InfluenzaA PMID:34811538 tetramer-sort yes amplicon-seq Naive T cells T1D T1D_5 chip0423_417982 PBMC +8377 CAMSPDRSGAGSYQLTF TRAV12-3*01 TRAJ28*01 HLA-A*02:01 B2M MHCI LLAGIGTVPI PGT HomoSapiens PMID:34811538 tetramer-sort yes amplicon-seq Naive T cells healthy healthy_3 chip0423_621087 PBMC +8379 CASSPGTGNSPLHF TRAV36/DV7*01 TRAJ11*01 CASSPGTGNSPLHF TRBV7-9*01 TRBJ1-6*01 HLA-B*08:01 B2M MHCI RAKFKQLL BZLF1 EBV PMID:34811538 tetramer-sort yes amplicon-seq effector T cells T1D T1D_5 chip0423_798683 PBMC +8380 CASRSRGSTYEQYF TRBV11-2*01 TRBJ2-7*01 HLA-A*02:01 B2M MHCI RLLPLLALLAL INS HomoSapiens PMID:34811538 tetramer-sort yes amplicon-seq Naive T cells T1D T1D_6 chip0423_533887 PBMC +8381 CASLHTQTNTEAFF TRBV12-3*01,TRBV12-4*01 TRBJ1-1*01 HLA-B*08:01 B2M MHCI RAKFKQLL BZLF1 EBV PMID:34811538 tetramer-sort yes amplicon-seq effector memory T cells T1D T1D_5 chip0423_676210 PBMC +8382 CASSQLLAGANNEQFF TRBV4-2*01 TRBJ2-1*01 HLA-B*08:01 B2M MHCI YLKDQQLL gp160 HIV-1 PMID:34811538 tetramer-sort yes amplicon-seq Naive T cells T1D T1D_5 chip0423_572453 PBMC +8383 CAMSVSNFGNEKLTF TRAV12-3*01 TRAJ48*01 CASRKTLAGAGANVLTF TRBV3-1*01 TRBJ2-6*01 HLA-A*02:01 B2M MHCI LLAGIGTVPI PGT HomoSapiens PMID:34811538 tetramer-sort yes amplicon-seq Naive T cells T1D T1D_6 chip0423_435119 PBMC +8385 CASSLTGGADTEAFF TRBV27*01 TRBJ1-1*01 HLA-A*02:01 B2M MHCI LLAGIGTVPI PGT HomoSapiens PMID:34811538 tetramer-sort yes amplicon-seq Naive T cells healthy healthy_4 chip0423_103311 PBMC +8386 CVVSGAGFQKLVF TRAV10*01 TRAJ8*01 CASSQAPGDPYEQYF TRBV4-3*01 TRBJ2-7*01 HLA-B*08:01 B2M MHCI YAYAKWKL ZNT8 HomoSapiens PMID:34811538 tetramer-sort yes amplicon-seq Naive T cells T1D T1D_6 chip0423_684562 PBMC +8387 CAENARYSGAGSYQLTF TRAV13-2*01 TRAJ28*01 CASSLELGLPYEQYF TRBV5-1*01 TRBJ2-7*01 HLA-B*08:01 B2M MHCI QAKWRLQTL EBNA3A EBV PMID:34811538 tetramer-sort yes amplicon-seq effector memory T cells T1D T1D_4 chip0423_110545 PBMC +8388 CALGAGGAGGFKTIF TRAV14/DV4*01 TRAJ9*01 CSARRSGQGIKNTIYF TRBV20-1*01 TRBJ1-3*01 HLA-B*08:01 B2M MHCI RAKFKQLL BZLF1 EBV PMID:34811538 tetramer-sort yes amplicon-seq effector memory T cells T1D T1D_5 chip0423_394307 PBMC +8389 CASTSKEAYNSPLHF TRBV19*01 TRBJ1-6*01 HLA-A*01:01 B2M MHCI CTELKLSDY NP InfluenzaA PMID:34811538 tetramer-sort yes amplicon-seq Naive T cells healthy healthy_3 chip0423_369211 PBMC +8390 CIVREGGGADGLSF TRAV26-1*01 TRAJ45*01 CASSLAVGEGPQHF TRBV7-9*01 TRBJ1-5*01 HLA-B*08:01 B2M MHCI RAKFKQLL BZLF1 EBV PMID:34811538 tetramer-sort yes amplicon-seq effector T cells T1D T1D_4 chip0423_196496 PBMC +8391 CSVGSGGTNEKLFF TRBV29-1*01 TRBJ1-4*01 HLA-A*02:01 B2M MHCI GLCTLVAML BLMF1 EBV PMID:34811538 tetramer-sort yes amplicon-seq effector memory T cells T1D T1D_4 chip0423_727107 PBMC +8392 CAAQETSYDKVIF TRAV13-1*01 TRAJ50*01 CASTQVDRPNYGYTF TRBV7-9*01 TRBJ1-2*01 HLA-B*08:01 B2M MHCI RAKFKQLL BZLF1 EBV PMID:34811538 tetramer-sort yes amplicon-seq effector memory T cells T1D T1D_5 chip0423_354751 PBMC +8393 CASSLGGGEGASEQFF TRBV7-6*01 TRBJ2-1*01 HLA-B*08:01 B2M MHCI FLRGRAYGL EBNA3A EBV PMID:34811538 tetramer-sort yes amplicon-seq effector memory T cells T1D T1D_4 chip0423_123076 PBMC +8394 CASSLGQAYEQYF TRBV7-8*01 TRBJ2-7*01 HLA-B*08:01 B2M MHCI FLRGRAYGL EBNA3A EBV PMID:34811538 tetramer-sort yes amplicon-seq effector memory T cells T1D T1D_6 chip0423_807263 PBMC +8395 CAPASGGSYIPTF TRAV24*01 TRAJ6*01 CASCRDGTYEQYF TRBV10-3*01 TRBJ2-7*01 HLA-A*01:01 B2M MHCI CTELKLSDY NP InfluenzaA PMID:34811538 tetramer-sort yes amplicon-seq effector T cells healthy healthy_3 chip0423_715596 PBMC +8396 CASSPLGSNEKLFF TRAV36/DV7*01 TRAJ5*01 CASSPLGSNEKLFF TRBV7-9*01 TRBJ1-4*01 HLA-B*08:01 B2M MHCI RAKFKQLL BZLF1 EBV PMID:34811538 tetramer-sort yes amplicon-seq effector memory T cells T1D T1D_5 chip0423_822764 PBMC +8397 CASSLGQAYEQYF TRBV7-8*01 TRBJ2-7*01 HLA-B*08:01 B2M MHCI FLRGRAYGL EBNA3A EBV PMID:34811538 tetramer-sort yes amplicon-seq effector memory T cells T1D T1D_6 chip0423_617347 PBMC +8398 CASSPWDTSYEQYF TRBV4-1*01 TRBJ2-7*01 HLA-B*08:01 B2M MHCI RAKFKQLL BZLF1 EBV PMID:34811538 tetramer-sort yes amplicon-seq central memory T cells T1D T1D_5 chip0423_739326 PBMC +8399 CASSQGPVEAFF TRBV4-1*01 TRBJ1-1*01 HLA-B*08:01 B2M MHCI EAKQKGFVPF GAD2 HomoSapiens PMID:34811538 tetramer-sort yes amplicon-seq Naive T cells T1D T1D_5 chip0423_349671 PBMC +8400 CAVLPSPVSPLRF TRAV21*01 TRAJ20*01 CASIGKTTSTDTQYF TRBV19*01 TRBJ2-3*01 HLA-A*01:01 B2M MHCI CTELKLSDY NP InfluenzaA PMID:34811538 tetramer-sort yes amplicon-seq effector T cells healthy healthy_3 chip0423_80328 PBMC +8401 CVVEPYNFNKFYF TRAV12-1*01 TRAJ21*01 CASSLEGSYGYTF TRBV7-9*01 TRBJ1-2*01 HLA-A*01:01 B2M MHCI CTELKLSDY NP InfluenzaA PMID:34811538 tetramer-sort yes amplicon-seq Naive T cells T1D T1D_6 chip0423_355043 PBMC +8402 CASLKPDSTGELFF TRBV2*01 TRBJ2-2*01 HLA-B*08:01 B2M MHCI RAKFKQLL BZLF1 EBV PMID:34811538 tetramer-sort yes amplicon-seq effector memory T cells T1D T1D_5 chip0423_840272 PBMC +8403 CAYRPPc?cCRELTF TRAV38-1*01 TRAJ48*01 HLA-A*02:01 B2M MHCI LLAGIGTVPI PGT HomoSapiens PMID:34811538 tetramer-sort yes amplicon-seq Naive T cells T1D T1D_6 chip0423_527345 PBMC +8404 CVSATDSWGKLQF TRAV12-1*01 TRAJ24*01 CASSSPTSQGVNEQFF TRBV27*01 TRBJ2-1*01 HLA-A*02:01 B2M MHCI LLAGIGTVPI PGT HomoSapiens PMID:34811538 tetramer-sort yes amplicon-seq Naive T cells healthy healthy_3 chip0423_667786 PBMC +8405 CASSVSGAPYEQYF TRBV9*01 TRBJ2-7*01 HLA-B*08:01 B2M MHCI FLRGRAYGL EBNA3A EBV PMID:34811538 tetramer-sort yes amplicon-seq effector T cells T1D T1D_6 chip0423_526542 PBMC +8406 CAVSNDYTLSF TRAV12-2*01 TRAJ20*01 CASSSVTEALYEQYF TRBV28*01 TRBJ2-7*01 HLA-A*02:01 B2M MHCI LLAGIGTVPI PGT HomoSapiens PMID:34811538 tetramer-sort yes amplicon-seq Naive T cells T1D T1D_4 chip0423_492610 PBMC +8407 CASSSGLAGGSHTGELFF TRBV11-1*01 TRBJ2-2*01 HLA-B*08:01 B2M MHCI RAKFKQLL BZLF1 EBV PMID:34811538 tetramer-sort yes amplicon-seq effector T cells T1D T1D_5 chip0423_274103 PBMC +8408 CASSTRSAYEQYF TRBV19*01 TRBJ2-7*01 HLA-A*02:01 B2M MHCI GILGFVFTL M1 InfluenzaA PMID:34811538 tetramer-sort yes amplicon-seq transitional T cells between effector and memory populations healthy healthy_4 chip0423_735482 PBMC +8409 CSAGRDGTNEKLFF TRBV29-1*01 TRBJ1-4*01 HLA-A*02:01 B2M MHCI GLCTLVAML BLMF1 EBV PMID:34811538 tetramer-sort yes amplicon-seq effector memory T cells T1D T1D_6 chip0423_427512 PBMC +8410 CAGLGSNDYKLRF TRAV35*01 TRAJ20*01 CANSAGPTGATNTGELFF TRBV9*01 TRBJ2-2*01 HLA-B*08:01 B2M MHCI LWMRLLPL INS HomoSapiens PMID:34811538 tetramer-sort yes amplicon-seq Naive T cells T1D T1D_6 chip0423_355065 PBMC +8411 CSVAPGQGPLYTF TRBV29-1*01 TRBJ1-2*01 HLA-B*08:01 B2M MHCI RAKFKQLL BZLF1 EBV PMID:34811538 tetramer-sort yes amplicon-seq effector memory T cells healthy healthy_4 chip0423_782821 PBMC +8412 CIGHMDSNYQLIW TRAV26-1*01 TRAJ33*01 CASSQDQGAGANGYTF TRBV14*01 TRBJ1-2*01 HLA-B*08:01 B2M MHCI TLKKMREI GAD2 HomoSapiens PMID:34811538 tetramer-sort yes amplicon-seq Naive T cells T1D T1D_5 chip0423_429944 PBMC +8413 CALYNTDKLIF TRAV9-2*01 TRAJ34*01 HLA-A*02:01 B2M MHCI GLCTLVAML BLMF1 EBV PMID:34811538 tetramer-sort yes amplicon-seq effector T cells T1D T1D_4 chip0423_415517 PBMC +8414 CASSLGQAYEQYF TRBV7-8*01 TRBJ2-7*01 HLA-B*08:01 B2M MHCI FLRGRAYGL EBNA3A EBV PMID:34811538 tetramer-sort yes amplicon-seq effector T cells T1D T1D_6 chip0423_80630 PBMC +8415 CAVLQDSNYQLIW TRAV12-2*01 TRAJ33*01 CASSDDGMNTEAFF TRBV10-2*01 TRBJ1-1*01 HLA-A*02:01 B2M MHCI CLGGLLTMV LMP2A EBV PMID:34811538 tetramer-sort yes amplicon-seq central memory T cells T1D T1D_4 chip0423_744641 PBMC +8416 CILPLAGGTSYGKLTF TRAV26-2*01 TRAJ52*01 CASSLGHAYEQYF TRBV7-8*01 TRBJ2-7*01 HLA-B*08:01 B2M MHCI FLRGRAYGL EBNA3A EBV PMID:34811538 tetramer-sort yes amplicon-seq transitional T cells between effector and memory populations T1D T1D_4 chip0423_732926 PBMC +8417 CASSEARLAGGYNEQFF TRBV2*01 TRBJ2-1*01 HLA-A*02:01 B2M MHCI LLAGIGTVPI PGT HomoSapiens PMID:34811538 tetramer-sort yes amplicon-seq Naive T cells healthy healthy_3 chip0423_615919 PBMC +8418 CILRDDNFNKFYF TRAV26-2*01 TRAJ21*01 CASSPAGARFGDEQFF TRBV9*01 TRBJ2-1*01 HLA-B*08:01 B2M MHCI MMIARFKM GAD2 HomoSapiens PMID:34811538 tetramer-sort yes amplicon-seq Naive T cells T1D T1D_5 chip0423_334641 PBMC +8419 CAMSPSNFGNEKLTF TRAV12-3*01 TRAJ48*01 CASSLEESTDSGNTIYF TRBV7-6*01 TRBJ1-3*01 HLA-A*02:01 B2M MHCI LLAGIGTVPI PGT HomoSapiens PMID:34811538 tetramer-sort yes amplicon-seq Naive T cells T1D T1D_6 chip0423_273 PBMC +8420 CAATETSYDKVIF TRAV13-1*01 TRAJ50*01 HLA-B*08:01 B2M MHCI RAKFKQLL BZLF1 EBV PMID:34811538 tetramer-sort yes amplicon-seq effector memory T cells T1D T1D_5 chip0423_502446 PBMC +8421 CAGASGTYKYIF TRAV27*01 TRAJ40*01 HLA-A*02:01 B2M MHCI GILGFVFTL M1 InfluenzaA PMID:34811538 tetramer-sort yes amplicon-seq central memory T cells healthy healthy_4 chip0423_57984 PBMC +8423 CAPIQPPYNFNKFYS TRAV35*01 TRAJ21*01 CASSESPAPGNEKLFF TRBV6-1*01 TRBJ1-4*01 HLA-A*01:01 B2M MHCI STNVGSNTY IAPP HomoSapiens PMID:34811538 tetramer-sort yes amplicon-seq central memory T cells T1D T1D_6 chip0423_801486 PBMC +8424 CASSYSSTGEYF TRBV6-2*01,TRBV6-3*01 TRBJ2-7*01 HLA-A*02:01 B2M MHCI YLLEMLWRL LMP1 EBV PMID:34811538 tetramer-sort yes amplicon-seq central memory T cells T1D T1D_4 chip0423_137812 PBMC +8425 CASSLFETGGTYGYTF TRBV12-3*01,TRBV12-4*01 TRBJ1-2*01 HLA-A*02:01 B2M MHCI LLAGIGTVPI PGT HomoSapiens PMID:34811538 tetramer-sort yes amplicon-seq Naive T cells T1D T1D_4 chip0423_327475 PBMC +8426 CSATDRGESGANVLTF TRBV20-1*01 TRBJ2-6*01 HLA-A*02:01 B2M MHCI LLFNILGGWV NS4B HCV PMID:34811538 tetramer-sort yes amplicon-seq transitional T cells between effector and memory populations healthy healthy_4 chip0423_26560 PBMC +8427 CASSLGARPYEQYF TRBV27*01 TRBJ2-7*01 HLA-A*02:01 B2M MHCI SLYNTVATLY GAG HIV-1 PMID:34811538 tetramer-sort yes amplicon-seq Naive T cells T1D T1D_4 chip0423_494164 PBMC +8428 CAVNPEGARLMF TRAV8-1*01 TRAJ31*01 CASSVPATGGTGELFF TRBV9*01 TRBJ2-2*01 HLA-B*08:01 B2M MHCI RAKFKQLL BZLF1 EBV PMID:34811538 tetramer-sort yes amplicon-seq effector memory T cells T1D T1D_5 chip0423_375430 PBMC +8429 CAGQWVc?tARQLTF TRAV35*01 TRAJ22*01 CASSLVDRPYEQYF TRBV7-9*01 TRBJ2-7*01 HLA-B*08:01 B2M MHCI RAKFKQLL BZLF1 EBV PMID:34811538 tetramer-sort yes amplicon-seq effector T cells T1D T1D_5 chip0423_744989 PBMC +8430 CAMRAIEGANNLFF TRAV14/DV4*01 TRAJ36*01 CASSLSSGGRGEQHF TRBV4-1*01 TRBJ2-7*01 HLA-B*08:01 B2M MHCI RAKFKQLL BZLF1 EBV PMID:34811538 tetramer-sort yes amplicon-seq effector T cells T1D T1D_5 chip0423_525429 PBMC +8431 CASSPTG??gAHGELFF TRBV7-3*01 TRBJ2-2*01 HLA-B*08:01 B2M MHCI RAKFKQLL BZLF1 EBV PMID:34811538 tetramer-sort yes amplicon-seq transitional T cells between effector and memory populations T1D T1D_5 chip0423_242591 PBMC +8432 CILPLAGGPRYGKLTF TRAV26-2*01 TRAJ52*01 CASSLGQAYEQYF TRBV7-8*01 TRBJ2-7*01 HLA-B*08:01 B2M MHCI FLRGRAYGL EBNA3A EBV PMID:34811538 tetramer-sort yes amplicon-seq effector T cells T1D T1D_6 chip0423_579949 PBMC +8433 CASRIAGTSYEQYF TRBV28*01 TRBJ2-7*01 HLA-A*02:01 B2M MHCI ALGIGILTV MART1 HomoSapiens PMID:34811538 tetramer-sort yes amplicon-seq Naive T cells T1D T1D_4 chip0423_649391 PBMC +8435 CAATETSYDKVIF TRAV13-1*01 TRAJ50*01 CASSETGLLNYGYTF TRBV25-1*01 TRBJ1-2*01 HLA-B*08:01 B2M MHCI RAKFKQLL BZLF1 EBV PMID:34811538 tetramer-sort yes amplicon-seq effector memory T cells T1D T1D_5 chip0423_141638 PBMC +8436 CAGNAGAGGFKTIF TRAV27*01 TRAJ9*01 HLA-B*08:01 B2M MHCI RAKFKQLL BZLF1 EBV PMID:34811538 tetramer-sort yes amplicon-seq effector T cells T1D T1D_5 chip0423_807145 PBMC +8439 CSADSYRDIDNYGYTF TRBV20-1*01 TRBJ1-2*01 HLA-A*01:01 B2M MHCI CTELKLSDY NP InfluenzaA PMID:34811538 tetramer-sort yes amplicon-seq transitional T cells between effector and memory populations healthy healthy_3 chip0423_870278 PBMC +8440 CASSILAGSTDTQYF TRBV19*01 TRBJ2-3*01 HLA-A*02:01 B2M MHCI LLSLFSLWL ZNT8 HomoSapiens PMID:34811538 tetramer-sort yes amplicon-seq Naive T cells T1D T1D_6 chip0423_828904 PBMC +8441 CASSIGLAGGDNEQFF TRBV19*01 TRBJ2-1*01 HLA-A*02:01 B2M MHCI LLAGIGTVPI PGT HomoSapiens PMID:34811538 tetramer-sort yes amplicon-seq Naive T cells T1D T1D_6 chip0423_857970 PBMC +8442 CAASETSYDKVIF TRAV13-1*01 TRAJ50*01 CASSPLGERHTEAFF TRBV7-9*01 TRBJ1-1*01 HLA-B*08:01 B2M MHCI RAKFKQLL BZLF1 EBV PMID:34811538 tetramer-sort yes amplicon-seq effector memory T cells T1D T1D_5 chip0423_732979 PBMC +8443 CAEMETSYDKVIF TRAV13-2*01 TRAJ50*01 CASSSLSGGAGNEQFF TRBV7-9*01 TRBJ2-1*01 HLA-B*08:01 B2M MHCI RAKFKQLL BZLF1 EBV PMID:34811538 tetramer-sort yes amplicon-seq effector T cells T1D T1D_5 chip0423_145661 PBMC +8444 CAFARGADGLTF TRAV24*01 TRAJ45*01 HLA-B*08:01 B2M MHCI RPIIRPATL NP InfluenzaA PMID:34811538 tetramer-sort yes amplicon-seq transitional T cells between effector and memory populations T1D T1D_4 chip0423_106206 PBMC +8445 CASTLLGATDTQYF TRBV7-9*01 TRBJ2-3*01 HLA-B*08:01 B2M MHCI RAKFKQLL BZLF1 EBV PMID:34811538 tetramer-sort yes amplicon-seq effector memory T cells T1D T1D_5 chip0423_192201 PBMC +8446 CILRETSYDKVIF TRAV26-2*01 TRAJ50*01 CASNPLGFQDTGELFF TRBV12-3*01,TRBV12-4*01 TRBJ2-2*01 HLA-B*08:01 B2M MHCI RAKFKQLL BZLF1 EBV PMID:34811538 tetramer-sort yes amplicon-seq effector memory T cells T1D T1D_5 chip0423_845811 PBMC +8447 CAAAETSYDKVIF TRAV13-1*01 TRAJ50*01 HLA-B*08:01 B2M MHCI RAKFKQLL BZLF1 EBV PMID:34811538 tetramer-sort yes amplicon-seq transitional T cells between effector and memory populations T1D T1D_5 chip0423_22124 PBMC +8449 CAARETSYDKVIF TRAV13-1*01 TRAJ50*01 CASSLVQGYEQYF TRBV7-9*01 TRBJ2-7*01 HLA-B*08:01 B2M MHCI RAKFKQLL BZLF1 EBV PMID:34811538 tetramer-sort yes amplicon-seq effector memory T cells T1D T1D_5 chip0423_869616 PBMC +8451 WVGNHSRGKAAGSKVTL TRAV12-1*01 TRAJ17*01 CASSPGTSGGGPGELFF TRBV4-1*01 TRBJ2-2*01 HLA-B*08:01 B2M MHCI RAKFKQLL BZLF1 EBV PMID:34811538 tetramer-sort yes amplicon-seq effector memory T cells healthy healthy_4 chip0423_661713 PBMC +8452 CATDWGAQKLVF TRAV17*01 TRAJ54*01 CASSLVGDRLYGYTF TRBV7-9*01 TRBJ1-2*01 HLA-B*08:01 B2M MHCI ILKLQVFL IAPP HomoSapiens PMID:34811538 tetramer-sort yes amplicon-seq Naive T cells T1D T1D_5 chip0423_189456 PBMC +8453 CAATETSYDKVIF TRAV13-1*01 TRAJ50*01 CASSPPGRNEKLFF TRBV12-3*01,TRBV12-4*01 TRBJ1-4*01 HLA-B*08:01 B2M MHCI RAKFKQLL BZLF1 EBV PMID:34811538 tetramer-sort yes amplicon-seq central memory T cells T1D T1D_5 chip0423_237662 PBMC +8454 CASSPPNTGELFF TRBV19*01 TRBJ2-2*01 HLA-A*02:01 B2M MHCI YVLDHLIVV BRLF1 EBV PMID:34811538 tetramer-sort yes amplicon-seq Naive T cells T1D T1D_4 chip0423_833380 PBMC +8455 CASSLAVGEGPQHF TRBV7-9*01 TRBJ1-5*01 HLA-B*08:01 B2M MHCI RAKFKQLL BZLF1 EBV PMID:34811538 tetramer-sort yes amplicon-seq effector memory T cells T1D T1D_4 chip0423_481941 PBMC +8456 CASQLAGGTGELFF TRBV24-1*01 TRBJ2-2*01 HLA-B*08:01 B2M MHCI RAKFKQLL BZLF1 EBV PMID:34811538 tetramer-sort yes amplicon-seq transitional T cells between effector and memory populations T1D T1D_5 chip0423_438958 PBMC +8457 CASSLAVGEGPQHF TRBV7-9*01 TRBJ1-5*01 HLA-B*08:01 B2M MHCI RAKFKQLL BZLF1 EBV PMID:34811538 tetramer-sort yes amplicon-seq effector memory T cells T1D T1D_4 chip0423_391981 PBMC +8458 CILPLAGGTSYGKLTF TRAV26-2*01 TRAJ52*01 CASSLGQAYEQYF TRBV7-8*01 TRBJ2-7*01 HLA-B*08:01 B2M MHCI FLRGRAYGL EBNA3A EBV PMID:34811538 tetramer-sort yes amplicon-seq effector memory T cells T1D T1D_6 chip0423_155046 PBMC +8459 CASSSRTGTKNTEAFF TRBV7-2*01 TRBJ1-1*01 HLA-A*01:01 B2M MHCI HSNLNDATY NP InfluenzaA PMID:34811538 tetramer-sort yes amplicon-seq effector memory T cells T1D T1D_6 chip0423_382712 PBMC +8460 CAFRISSGSARQLTF TRAV24*01 TRAJ22*01 CASSVESgg??ggGLSPLHF TRBV9*01 TRBJ1-6*01 HLA-B*08:01 B2M MHCI TLKKMREI GAD2 HomoSapiens PMID:34811538 tetramer-sort yes amplicon-seq Naive T cells T1D T1D_5 chip0423_296772 PBMC +8461 CASSLWYRVETQYF TRBV5-6*01 TRBJ2-5*01 HLA-A*01:01 B2M MHCI CTELKLSDY NP InfluenzaA PMID:34811538 tetramer-sort yes amplicon-seq transitional T cells between effector and memory populations healthy healthy_3 chip0423_482974 PBMC +8462 CAAPETSYDKVIF TRAV13-1*01 TRAJ50*01 CASSLLGEQNSPLHF TRBV7-9*01 TRBJ1-6*01 HLA-B*08:01 B2M MHCI RAKFKQLL BZLF1 EBV PMID:34811538 tetramer-sort yes amplicon-seq effector T cells T1D T1D_5 chip0423_387011 PBMC +8463 CADMETSYDKVIF TRAV13-1*01 TRAJ50*01 HLA-B*08:01 B2M MHCI RAKFKQLL BZLF1 EBV PMID:34811538 tetramer-sort yes amplicon-seq central memory T cells T1D T1D_5 chip0423_267431 PBMC +8464 CAASVTPDD*AIL TRAV13-1*01 TRAJ50*01 CASSPPGRNEKLFF TRBV12-3*01,TRBV12-4*01 TRBJ1-4*01 HLA-B*08:01 B2M MHCI RAKFKQLL BZLF1 EBV PMID:34811538 tetramer-sort yes amplicon-seq effector T cells T1D T1D_5 chip0423_721164 PBMC +8465 CAISDDRQGLGQYF TRBV10-3*01 TRBJ2-7*01 HLA-A*02:01 B2M MHCI LLSILCIWV ZNT8 HomoSapiens PMID:34811538 tetramer-sort yes amplicon-seq Naive T cells T1D T1D_6 chip0423_577967 PBMC +8466 CAASETSYDKVIF TRAV13-1*01 TRAJ50*01 HLA-B*08:01 B2M MHCI RAKFKQLL BZLF1 EBV PMID:34811538 tetramer-sort yes amplicon-seq effector T cells T1D T1D_5 chip0423_538757 PBMC +8467 CAARETSYDKVIF TRAV13-1*01 TRAJ50*01 CASSSLGDREETQYF TRBV7-9*01 TRBJ2-5*01 HLA-B*08:01 B2M MHCI RAKFKQLL BZLF1 EBV PMID:34811538 tetramer-sort yes amplicon-seq effector memory T cells T1D T1D_5 chip0423_211418 PBMC +8468 CAARETSYDKVIF TRAV13-1*01 TRAJ50*01 CASSPLGTADSGKHHIF TRBV11-1*01 TRBJ1-3*01 HLA-B*08:01 B2M MHCI RAKFKQLL BZLF1 EBV PMID:34811538 tetramer-sort yes amplicon-seq effector memory T cells T1D T1D_5 chip0423_848594 PBMC +8469 CASSQWDNQPQHF TRBV4-1*01 TRBJ1-5*01 HLA-B*08:01 B2M MHCI WMRLLPLL INS HomoSapiens PMID:34811538 tetramer-sort yes amplicon-seq transitional T cells between effector and memory populations T1D T1D_6 chip0423_273508 PBMC +8470 CASSDGTSGLNEQFF TRBV7-2*01 TRBJ2-1*01 HLA-A*02:01 B2M MHCI LLAGIGTVPI PGT HomoSapiens PMID:34811538 tetramer-sort yes amplicon-seq Naive T cells healthy healthy_4 chip0423_56340 PBMC +8471 CAGPPLSSGSARQMAC TRAV27*01 TRAJ22*01 HLA-B*08:01 B2M MHCI ALKCKGFHV NP InfluenzaA PMID:34811538 tetramer-sort yes amplicon-seq Naive T cells T1D T1D_6 chip0423_230112 PBMC +8472 CASSFLRNNEQFF TRBV7-9*01 TRBJ2-1*01 HLA-B*08:01 B2M MHCI RAKFKQLL BZLF1 EBV PMID:34811538 tetramer-sort yes amplicon-seq effector T cells T1D T1D_5 chip0423_379217 PBMC +8473 CAVNPDSWGKLQF TRAV12-2*01 TRAJ24*01 CASGTSRQETQYF TRBV28*01 TRBJ2-5*01 HLA-B*08:01 B2M MHCI TLKKMREI GAD2 HomoSapiens PMID:34811538 tetramer-sort yes amplicon-seq Naive T cells T1D T1D_6 chip0423_496940 PBMC +8474 CAASKIAta?RGPDRLTF TRAV23/DV6*01 TRAJ45*01 CASSLGQAYEQYF TRBV7-8*01 TRBJ2-7*01 HLA-B*08:01 B2M MHCI FLRGRAYGL EBNA3A EBV PMID:34811538 tetramer-sort yes amplicon-seq effector T cells T1D T1D_6 chip0423_12354 PBMC +8476 CASSLAVGEGPQHF TRBV7-9*01 TRBJ1-5*01 HLA-B*08:01 B2M MHCI RAKFKQLL BZLF1 EBV PMID:34811538 tetramer-sort yes amplicon-seq effector memory T cells T1D T1D_4 chip0423_476851 PBMC +8477 CAATETSYDKVIF TRAV13-1*01 TRAJ50*01 HLA-B*08:01 B2M MHCI RAKFKQLL BZLF1 EBV PMID:34811538 tetramer-sort yes amplicon-seq effector memory T cells T1D T1D_5 chip0423_25618 PBMC +8478 CIAVTStc??ccGNQFYF TRAV26-1*01 TRAJ49*01 CSAGRDGTNEKLFF TRBV29-1*01 TRBJ1-4*01 HLA-A*02:01 B2M MHCI GLCTLVAML BLMF1 EBV PMID:34811538 tetramer-sort yes amplicon-seq effector T cells T1D T1D_6 chip0423_800824 PBMC +8479 CAASMDNAGNMLTF TRAV13-1*01 TRAJ39*01 CASSSSGGKSYNEQFF TRBV7-8*01 TRBJ2-1*01 HLA-A*02:01 B2M MHCI RLLPLLALL PREINS HomoSapiens PMID:34811538 tetramer-sort yes amplicon-seq Naive T cells T1D T1D_6 chip0423_33539 PBMC +8480 CVVNIGGGSQENLIF TRAV12-1*01 TRAJ42*01 CASSIRSSNEQFF TRBV19*01 TRBJ2-1*01 HLA-A*02:01 B2M MHCI GILGFVFTL M1 InfluenzaA PMID:34811538 tetramer-sort yes amplicon-seq transitional T cells between effector and memory populations T1D T1D_4 chip0423_706767 PBMC +8481 CALSEAAQWTGNQFCF TRAV19*01 TRAJ49*01 CASSSAGGIAYNEQFF TRBV5-5*01 TRBJ2-1*01 HLA-A*02:01 B2M MHCI LLPPLLEHL PTPRN HomoSapiens PMID:34811538 tetramer-sort yes amplicon-seq Naive T cells T1D T1D_6 chip0423_119576 PBMC +8482 CAAMETSYDKVIF TRAV13-1*01 TRAJ50*01 HLA-B*08:01 B2M MHCI RAKFKQLL BZLF1 EBV PMID:34811538 tetramer-sort yes amplicon-seq effector memory T cells T1D T1D_4 chip0423_696395 PBMC +8483 CAMGKSNFGNEKLTF TRAV12-3*01 TRAJ48*01 CASRPTTVFREGETQYF TRBV28*01 TRBJ2-5*01 HLA-A*02:01 B2M MHCI LLAGIGTVPI PGT HomoSapiens PMID:34811538 tetramer-sort yes amplicon-seq Naive T cells T1D T1D_6 chip0423_472681 PBMC +8484 CATSAGTALIF TRAV12-1*01 TRAJ15*01 CASSFR*??gIAGELFF TRBV27*01 TRBJ2-2*01 HLA-A*02:01 B2M MHCI LLAGIGTVPI PGT HomoSapiens PMID:34811538 tetramer-sort yes amplicon-seq Naive T cells healthy healthy_3 chip0423_181797 PBMC +8485 CAMREGESSASKIIF TRAV14/DV4*01 TRAJ3*01 CSVGTSYGYTF TRBV29-1*01 TRBJ1-2*01 HLA-B*08:01 B2M MHCI RAKFKQLL BZLF1 EBV PMID:34811538 tetramer-sort yes amplicon-seq effector T cells T1D T1D_5 chip0423_865234 PBMC +8486 CAVDTATLIF TRAV21*01 TRAJ34*01 CASTLSSSYEQYF TRBV12-3*01,TRBV12-4*01 TRBJ2-7*01 HLA-A*01:01 B2M MHCI CTELKLSDY NP InfluenzaA PMID:34811538 tetramer-sort yes amplicon-seq transitional T cells between effector and memory populations healthy healthy_3 chip0423_103569 PBMC +8487 CASSQVGLAATSTDTQYF TRBV4-1*01 TRBJ2-3*01 HLA-A*01:01 B2M MHCI CTELKLSDY NP InfluenzaA PMID:34811538 tetramer-sort yes amplicon-seq transitional T cells between effector and memory populations healthy healthy_3 chip0423_480615 PBMC +8488 CASSLELGLPYEQYF TRBV5-1*01 TRBJ2-7*01 HLA-B*08:01 B2M MHCI QAKWRLQTL EBNA3A EBV PMID:34811538 tetramer-sort yes amplicon-seq effector memory T cells T1D T1D_4 chip0423_384224 PBMC +8489 CASSLAVGEGPQHF TRBV7-9*01 TRBJ1-5*01 HLA-B*08:01 B2M MHCI RAKFKQLL BZLF1 EBV PMID:34811538 tetramer-sort yes amplicon-seq effector memory T cells T1D T1D_4 chip0423_607977 PBMC +8490 CILPLAGGTSHGKLTF TRAV26-2*01 TRAJ52*01 CASSQGQAYEQYF TRBV7-8*01 TRBJ2-7*01 HLA-B*08:01 B2M MHCI FLRGRAYGL EBNA3A EBV PMID:34811538 tetramer-sort yes amplicon-seq effector memory T cells T1D T1D_4 chip0423_168343 PBMC +8491 CSVETTSGSGEQYF TRBV29-1*01 TRBJ2-7*01 HLA-A*02:01 B2M MHCI LLAGIGTVPI PGT HomoSapiens PMID:34811538 tetramer-sort yes amplicon-seq Naive T cells healthy healthy_3 chip0423_15422 PBMC +8492 CAAAETSYDKVIF TRAV13-1*01 TRAJ50*01 CASQLAGGTGELFF TRBV24-1*01 TRBJ2-2*01 HLA-B*08:01 B2M MHCI RAKFKQLL BZLF1 EBV PMID:34811538 tetramer-sort yes amplicon-seq effector T cells T1D T1D_5 chip0423_223755 PBMC +8493 CILPLAGGTSYGKLTF TRAV26-2*01 TRAJ52*01 HLA-B*08:01 B2M MHCI FLRGRAYGL EBNA3A EBV PMID:34811538 tetramer-sort yes amplicon-seq effector memory T cells healthy healthy_4 chip0423_65870 PBMC +8494 CASSFVDKINSPLHF TRAV36/DV7*01 TRAJ11*01 CASSFVDKINSPLHF TRBV7-9*01 TRBJ1-6*01 HLA-B*08:01 B2M MHCI RAKFKQLL BZLF1 EBV PMID:34811538 tetramer-sort yes amplicon-seq effector memory T cells T1D T1D_5 chip0423_837428 PBMC +8495 CAAVGPWgg??ctGCFRLTF TRAV8-3*01 TRAJ28*01 CASSQGWSGTSTYEQYF TRBV3-1*01 TRBJ2-7*01 HLA-A*02:01 B2M MHCI FLYALALLL LMP2 EBV PMID:34811538 tetramer-sort yes amplicon-seq central memory T cells healthy healthy_4 chip0423_651651 PBMC +8496 CASTLDWTTEAFF TRBV11-1*01 TRBJ1-1*01 HLA-A*01:01 B2M MHCI LTSLTILQLY G6PC2 HomoSapiens PMID:34811538 tetramer-sort yes amplicon-seq Naive T cells T1D T1D_5 chip0423_539676 PBMC +8497 CASSQMSDTQYF TRBV6-2*01,TRBV6-3*01 TRBJ2-3*01 HLA-A*02:01 B2M MHCI YVLDHLIVV BRLF1 EBV PMID:34811538 tetramer-sort yes amplicon-seq effector memory T cells healthy healthy_3 chip0423_633011 PBMC +8498 CAMSGSNFGNEKLTF TRAV12-3*01 TRAJ48*01 CASSSKTAEKLFF TRBV13*01 TRBJ1-4*01 HLA-A*02:01 B2M MHCI LLAGIGTVPI PGT HomoSapiens PMID:34811538 tetramer-sort yes amplicon-seq Naive T cells T1D T1D_4 chip0423_656592 PBMC +8499 CSVGGNTEAFF TRBV29-1*01 TRBJ1-1*01 HLA-B*08:01 B2M MHCI RAKFKQLL BZLF1 EBV PMID:34811538 tetramer-sort yes amplicon-seq effector T cells T1D T1D_5 chip0423_857338 PBMC +8501 CAALETSYDKVIF TRAV13-1*01 TRAJ50*01 CASSPDGSTGELFF TRBV12-3*01,TRBV12-4*01 TRBJ2-2*01 HLA-B*08:01 B2M MHCI RAKFKQLL BZLF1 EBV PMID:34811538 tetramer-sort yes amplicon-seq effector memory T cells T1D T1D_5 chip0423_592324 PBMC +8502 CAMGRSNFGNEKLTF TRAV12-3*01 TRAJ48*01 CASVGGQGYTF TRBV12-3*01,TRBV12-4*01 TRBJ1-2*01 HLA-A*02:01 B2M MHCI LLAGIGTVPI PGT HomoSapiens PMID:34811538 tetramer-sort yes amplicon-seq Naive T cells T1D T1D_6 chip0423_292644 PBMC +8503 CAGQAFAGNQFYF TRAV35*01 TRAJ49*01 HLA-A*02:01 B2M MHCI VLFGLGFAI IGRP HomoSapiens PMID:34811538 tetramer-sort yes amplicon-seq Naive T cells T1D T1D_4 chip0423_827944 PBMC +8504 CGSHGGSQGNLIF TRAV20*01 TRAJ42*01 HLA-A*02:01 B2M MHCI TLLANVTAV VP6 RotavirusA PMID:34811538 tetramer-sort yes amplicon-seq transitional T cells between effector and memory populations T1D T1D_6 chip0423_708078 PBMC +8505 CAASEAYGNKLVF TRAV29/DV5*01 TRAJ47*01 CASSLGSGSYNSPLHF TRBV12-3*01,TRBV12-4*01 TRBJ1-6*01 HLA-B*08:01 B2M MHCI QAKWRLQTL EBNA3A EBV PMID:34811538 tetramer-sort yes amplicon-seq Naive T cells T1D T1D_6 chip0423_135356 PBMC +8506 CASSQEVTDTQYF TRBV4-3*01 TRBJ2-3*01 HLA-A*02:01 B2M MHCI YLLEMLWRL LMP1 EBV PMID:34811538 tetramer-sort yes amplicon-seq effector memory T cells T1D T1D_4 chip0423_63534 PBMC +8507 CAAAETSYDKVIF TRAV13-1*01 TRAJ50*01 CASQLAGGTGELFF TRBV24-1*01 TRBJ2-2*01 HLA-B*08:01 B2M MHCI RAKFKQLL BZLF1 EBV PMID:34811538 tetramer-sort yes amplicon-seq effector memory T cells T1D T1D_5 chip0423_444138 PBMC +8508 CAVRD??tNMLPF TRAV3*01 TRAJ39*01 CASSPSGQGSYEQYF TRBV6-1*01 TRBJ2-7*01 HLA-A*02:01 B2M MHCI LLAGIGTVPI PGT HomoSapiens PMID:34811538 tetramer-sort yes amplicon-seq Naive T cells T1D T1D_4 chip0423_142434 PBMC +8509 CILPLAGGTSYGKLTV TRAV26-2*01 TRAJ52*01 HLA-B*08:01 B2M MHCI FLRGRAYGL EBNA3A EBV PMID:34811538 tetramer-sort yes amplicon-seq effector memory T cells T1D T1D_6 chip0423_872165 PBMC +8510 CASSWGYEQYF TRBV12-3*01,TRBV12-4*01 TRBJ2-7*01 HLA-A*02:01 B2M MHCI LLAGIGTVPI PGT HomoSapiens PMID:34811538 tetramer-sort yes amplicon-seq Naive T cells T1D T1D_6 chip0423_425498 PBMC +8511 CASSSLSGGAGNEQFF TRBV7-9*01 TRBJ2-1*01 HLA-B*08:01 B2M MHCI RAKFKQLL BZLF1 EBV PMID:34811538 tetramer-sort yes amplicon-seq central memory T cells T1D T1D_5 chip0423_332359 PBMC +8512 CAAAETSYDKVIF TRAV13-1*01 TRAJ50*01 CASQLAGGTGELFF TRBV24-1*01 TRBJ2-2*01 HLA-B*08:01 B2M MHCI RAKFKQLL BZLF1 EBV PMID:34811538 tetramer-sort yes amplicon-seq effector T cells T1D T1D_5 chip0423_131089 PBMC +8513 CASSLVVYNEQFF TRBV6-1*01 TRBJ2-1*01 HLA-B*08:01 B2M MHCI YAYAKWKL ZNT8 HomoSapiens PMID:34811538 tetramer-sort yes amplicon-seq central memory T cells T1D T1D_5 chip0423_27359 PBMC +8514 CVVIAGDYKLSF TRAV12-1*01 TRAJ20*01 CSARYRLAGPYEQYF TRBV20-1*01 TRBJ2-7*01 HLA-B*08:01 B2M MHCI QAKWRLQTL EBNA3A EBV PMID:34811538 tetramer-sort yes amplicon-seq Naive T cells T1D T1D_6 chip0423_3188 PBMC +8515 CAYGQNFVF TRAV8-3*01 TRAJ26*01 CASSADSDYGYTF TRBV9*01 TRBJ1-2*01 HLA-A*02:01 B2M MHCI YLLEMLWRL LMP1 EBV PMID:34811538 tetramer-sort yes amplicon-seq effector memory T cells T1D T1D_4 chip0423_861220 PBMC +8516 CAAIETSYDKVIF TRAV13-1*01 TRAJ50*01 CSVAGNTEAFF TRBV29-1*01 TRBJ1-1*01 HLA-B*08:01 B2M MHCI RAKFKQLL BZLF1 EBV PMID:34811538 tetramer-sort yes amplicon-seq effector memory T cells T1D T1D_5 chip0423_629350 PBMC +8517 CAVPGGSQGNLIF TRAV8-3*01 TRAJ42*01 CASSYSSTGEYF TRBV6-2*01,TRBV6-3*01 TRBJ2-7*01 HLA-A*02:01 B2M MHCI YLLEMLWRL LMP1 EBV PMID:34811538 tetramer-sort yes amplicon-seq effector memory T cells T1D T1D_4 chip0423_314606 PBMC +8518 CAPSETSYDKVIF TRAV13-1*01 TRAJ50*01 HLA-B*08:01 B2M MHCI RAKFKQLL BZLF1 EBV PMID:34811538 tetramer-sort yes amplicon-seq effector T cells T1D T1D_5 chip0423_833771 PBMC +8519 CAVTFSSTSGTYKYIF TRAV8-1*01 TRAJ40*01 HLA-B*08:01 B2M MHCI RAKFKQLL BZLF1 EBV PMID:34811538 tetramer-sort yes amplicon-seq effector memory T cells T1D T1D_5 chip0423_820827 PBMC +8520 CASRGREYTDTQYF TRBV6-1*01 TRBJ2-3*01 HLA-A*02:01 B2M MHCI LVGPTPVNI POL HIV-1 PMID:34811538 tetramer-sort yes amplicon-seq Naive T cells T1D T1D_6 chip0423_429825 PBMC +8521 CAVKDTDKLIF TRAV8-1*01 TRAJ34*01 HLA-A*02:01 B2M MHCI YVLDHLIVV BRLF1 EBV PMID:34811538 tetramer-sort yes amplicon-seq effector memory T cells healthy healthy_3 chip0423_257123 PBMC +8522 CASSSGQPLQFF TRBV4-2*01 TRBJ2-1*01 HLA-A*02:01 B2M MHCI LLAGIGTVPI PGT HomoSapiens PMID:34811538 tetramer-sort yes amplicon-seq Naive T cells T1D T1D_4 chip0423_180436 PBMC +8523 CILPLAGGTSYGKLTF TRAV26-2*01 TRAJ52*01 CASNLGQAYEQYF TRBV7-8*01 TRBJ2-7*01 HLA-B*08:01 B2M MHCI FLRGRAYGL EBNA3A EBV PMID:34811538 tetramer-sort yes amplicon-seq effector T cells T1D T1D_6 chip0423_59126 PBMC +8524 CAASSHTDKLIF TRAV29/DV5*01 TRAJ34*01 HLA-A*01:01 B2M MHCI GSHLVEALY INS HomoSapiens PMID:34811538 tetramer-sort yes amplicon-seq transitional T cells between effector and memory populations healthy healthy_3 chip0423_850409 PBMC +8525 CASGPDISYSYEQYF TRBV12-5*01 TRBJ2-7*01 HLA-B*08:01 B2M MHCI RAKFKQLL BZLF1 EBV PMID:34811538 tetramer-sort yes amplicon-seq effector memory T cells T1D T1D_5 chip0423_635263 PBMC +8526 CASSLDSPSYYEQYF TRBV11-2*01 TRBJ2-7*01 HLA-A*02:01 B2M MHCI LLMEGVPKSL ZNT8 HomoSapiens PMID:34811538 tetramer-sort yes amplicon-seq effector memory T cells healthy healthy_4 chip0423_362381 PBMC +8527 CALSDQVa?gAGTALIF TRAV9-2*01 TRAJ15*01 CATTGESYNEQFF TRBV10-3*01 TRBJ2-1*01 HLA-A*01:01 B2M MHCI HSNLNDATY NP InfluenzaA PMID:34811538 tetramer-sort yes amplicon-seq Naive T cells healthy healthy_3 chip0423_359380 PBMC +8528 CSLAGFGat?SGGTPPVC TRAV6*01 TRAJ29*01 CSVGDRASYGYTF TRBV20-1*01 TRBJ1-2*01 HLA-A*01:01 B2M MHCI CTELKLSDY NP InfluenzaA PMID:34811538 tetramer-sort yes amplicon-seq effector memory T cells healthy healthy_3 chip0423_346962 PBMC +8529 CACGFISFGT??gT*SGANVLPF TRBV7-3*01 TRBJ2-6*01 HLA-B*08:01 B2M MHCI RAKFKQLL BZLF1 EBV PMID:34811538 tetramer-sort yes amplicon-seq effector memory T cells healthy healthy_4 chip0423_166434 PBMC +8530 CAVPGGSQGNLIF TRAV8-3*01 TRAJ42*01 HLA-A*02:01 B2M MHCI ALWMRLLPLL INS HomoSapiens PMID:34811538 tetramer-sort yes amplicon-seq Naive T cells healthy healthy_3 chip0423_778256 PBMC +8531 CADNYGQNFVF TRAV17*01 TRAJ26*01 CAIASPQREGTDTQYF TRBV28*01 TRBJ2-3*01 HLA-A*02:01 B2M MHCI LLAGIGTVPI PGT HomoSapiens PMID:34811538 tetramer-sort yes amplicon-seq Naive T cells healthy healthy_3 chip0423_6456 PBMC +8532 CASRNSGNTPLVS TRAV21*01 TRAJ29*01 CASSYAIAEQYF TRBV6-5*01 TRBJ2-7*01 HLA-A*02:01 B2M MHCI LLAGIGTVPI PGT HomoSapiens PMID:34811538 tetramer-sort yes amplicon-seq Naive T cells T1D T1D_6 chip0423_412849 PBMC +8533 CAALILgg?GYATVSI TRAV24*01,TRAV12-3*01 TRAJ13*01 CASSPHGDAYGYTF TRBV12-3*01,TRBV12-4*01 TRBJ1-2*01 HLA-A*01:01 B2M MHCI QQDKHYDLSY GAD2 HomoSapiens PMID:34811538 tetramer-sort yes amplicon-seq Naive T cells T1D T1D_5 chip0423_173669 PBMC +8534 CAVEDQGRSYNTDKLIF TRAV2*01 TRAJ34*01 HLA-B*08:01 B2M MHCI RAKFKQLL BZLF1 EBV PMID:34811538 tetramer-sort yes amplicon-seq effector memory T cells healthy healthy_4 chip0423_500376 PBMC +8536 CAMGVSNFESEKLTF TRAV12-3*01 TRAJ48*01 CASSRVQVAGEETQYF TRBV5-6*01 TRBJ2-5*01 HLA-A*02:01 B2M MHCI LLAGIGTVPI PGT HomoSapiens PMID:34811538 tetramer-sort yes amplicon-seq Naive T cells T1D T1D_4 chip0423_249848 PBMC +8537 CAEAGTALLF TRAV13-2*01 TRAJ15*01 CASSQDGTGINTEAFF TRBV4-1*01 TRBJ1-1*01 HLA-A*01:01 B2M MHCI CTELKLSDY NP InfluenzaA PMID:34811538 tetramer-sort yes amplicon-seq transitional T cells between effector and memory populations T1D T1D_5 chip0423_69534 PBMC +8538 CASSTTRAGTWPLHF TRAV36/DV7*01 TRAJ11*01 CASSTTRAGTWPLHF TRBV7-9*01 TRBJ1-6*01 HLA-B*08:01 B2M MHCI RAKFKQLL BZLF1 EBV PMID:34811538 tetramer-sort yes amplicon-seq effector memory T cells healthy healthy_4 chip0423_62265 PBMC +8539 CASTPLLGGASTQYF TRBV6-1*01 TRBJ2-3*01 HLA-A*02:01 B2M MHCI YVLDHLIVV BRLF1 EBV PMID:34811538 tetramer-sort yes amplicon-seq central memory T cells T1D T1D_4 chip0423_456567 PBMC +8540 CASSIYSINEQFF TRBV19*01 TRBJ2-1*01 HLA-A*02:01 B2M MHCI GILGFVFTL M1 InfluenzaA PMID:34811538 tetramer-sort yes amplicon-seq transitional T cells between effector and memory populations T1D T1D_6 chip0423_391713 PBMC +8542 CSAGRDGTNEKLFF TRBV29-1*01 TRBJ1-4*01 HLA-A*02:01 B2M MHCI GLCTLVAML BLMF1 EBV PMID:34811538 tetramer-sort yes amplicon-seq effector T cells T1D T1D_6 chip0423_295267 PBMC +8543 CAENQNct??ccYDKVIF TRAV13-2*01 TRAJ50*01 CASSVPATGGTGELFF TRBV9*01 TRBJ2-2*01 HLA-B*08:01 B2M MHCI RAKFKQLL BZLF1 EBV PMID:34811538 tetramer-sort yes amplicon-seq effector memory T cells T1D T1D_5 chip0423_35612 PBMC +8544 CASSQEWSSTDTQYF TRBV4-2*01 TRBJ2-3*01 HLA-A*01:01 B2M MHCI LVSDGGPNLY PB1 InfluenzaA PMID:34811538 tetramer-sort yes amplicon-seq Naive T cells T1D T1D_4 chip0423_745438 PBMC +8546 CALPSGNTPLVF TRAV12-2*01 TRAJ29*01 CASSILGLNTGELFF TRBV19*01 TRBJ2-2*01 HLA-A*02:01 B2M MHCI LLAGIGTVPI PGT HomoSapiens PMID:34811538 tetramer-sort yes amplicon-seq Naive T cells healthy healthy_3 chip0423_259603 PBMC +8547 CASRVGREPTGELFF TRBV3-1*01 TRBJ2-2*01 HLA-B*08:01 B2M MHCI RAKFKQLL BZLF1 EBV PMID:34811538 tetramer-sort yes amplicon-seq effector memory T cells healthy healthy_4 chip0423_210809 PBMC +8548 CATDANTGNQFYF TRAV17*01 TRAJ49*01 HLA-A*02:01 B2M MHCI VAANIVLTV ZNT8 HomoSapiens PMID:34811538 tetramer-sort yes amplicon-seq Naive T cells T1D T1D_6 chip0423_204940 PBMC +8549 CAASKIEga?GGAAGLTF TRAV23/DV6*01 TRAJ45*01 CASSLGQAYEQYF TRBV7-8*01 TRBJ2-7*01 HLA-B*08:01 B2M MHCI FLRGRAYGL EBNA3A EBV PMID:34811538 tetramer-sort yes amplicon-seq effector T cells T1D T1D_6 chip0423_814321 PBMC +8550 CAVGDP*tt??caGNTPLVF TRAV8-3*01 TRAJ29*01 CASSPGVIYEQYF TRBV19*01 TRBJ2-7*01 HLA-A*02:01 B2M MHCI ALGIGILTV MART1 HomoSapiens PMID:34811538 tetramer-sort yes amplicon-seq transitional T cells between effector and memory populations T1D T1D_4 chip0423_698659 PBMC +8551 CASSTPRAISSYNEQFF TRBV19*01 TRBJ2-1*01 HLA-A*01:01 B2M MHCI CTELKLSDY NP InfluenzaA PMID:34811538 tetramer-sort yes amplicon-seq transitional T cells between effector and memory populations healthy healthy_3 chip0423_821651 PBMC +8552 CAVTGDYKLSF TRAV12-2*01 TRAJ20*01 CASNSQGLETEAFF TRBV7-9*01 TRBJ1-1*01 HLA-A*02:01 B2M MHCI LLAGIGTVPI PGT HomoSapiens PMID:34811538 tetramer-sort yes amplicon-seq Naive T cells healthy healthy_3 chip0423_107699 PBMC +8554 CASSPPGRNEKLFF TRBV12-3*01,TRBV12-4*01 TRBJ1-4*01 HLA-B*08:01 B2M MHCI RAKFKQLL BZLF1 EBV PMID:34811538 tetramer-sort yes amplicon-seq effector memory T cells T1D T1D_5 chip0423_853396 PBMC +8556 CAEEETSYDKVIF TRAV13-2*01 TRAJ50*01 CASSLLDGEDTEAFF TRBV7-9*01 TRBJ1-1*01 HLA-B*08:01 B2M MHCI RAKFKQLL BZLF1 EBV PMID:34811538 tetramer-sort yes amplicon-seq effector memory T cells T1D T1D_5 chip0423_21942 PBMC +8557 CADTNTDKLIF TRAV27*01 TRAJ34*01 CASRRRGg?gPSLRAVL TRBV7-6*01 TRBJ2-7*01 HLA-B*08:01 B2M MHCI YLKDQQLL gp160 HIV-1 PMID:34811538 tetramer-sort yes amplicon-seq Naive T cells T1D T1D_5 chip0423_520595 PBMC +8558 CAVSDGEGAQKLVF TRAV8-6*01 TRAJ54*01 CASSLTILAGPNTEAFF TRBV7-3*01 TRBJ1-1*01 HLA-B*08:01 B2M MHCI RAKFKQLL BZLF1 EBV PMID:34811538 tetramer-sort yes amplicon-seq effector memory T cells T1D T1D_4 chip0423_398718 PBMC +8559 CASSQGQGLYGYTF TRBV4-1*01 TRBJ1-2*01 HLA-B*08:01 B2M MHCI YLKDQQLL gp160 HIV-1 PMID:34811538 tetramer-sort yes amplicon-seq Naive T cells T1D T1D_6 chip0423_712876 PBMC +8560 CAVSDGEGAQKLVF TRAV8-6*01 TRAJ54*01 HLA-B*08:01 B2M MHCI RAKFKQLL BZLF1 EBV PMID:34811538 tetramer-sort yes amplicon-seq effector memory T cells T1D T1D_4 chip0423_240100 PBMC +8561 CAMTLSNFGNEKLTF TRAV12-3*01 TRAJ48*01 CASSIGGYRYLQETQYF TRBV11-2*01 TRBJ2-5*01 HLA-A*02:01 B2M MHCI LLAGIGTVPI PGT HomoSapiens PMID:34811538 tetramer-sort yes amplicon-seq Naive T cells T1D T1D_6 chip0423_612356 PBMC +8562 CAALETSYDKVIF TRAV13-1*01 TRAJ50*01 CASTGGNTEAFF TRBV2*01 TRBJ1-1*01 HLA-B*08:01 B2M MHCI RAKFKQLL BZLF1 EBV PMID:34811538 tetramer-sort yes amplicon-seq effector memory T cells T1D T1D_5 chip0423_81458 PBMC +8563 CAVREYGNKLVF TRAV1-2*01 TRAJ47*01 CASSLAGREGTQYF TRBV11-3*01 TRBJ2-3*01 HLA-B*08:01 B2M MHCI ELRSRYWAI NP InfluenzaA PMID:34811538 tetramer-sort yes amplicon-seq transitional T cells between effector and memory populations T1D T1D_6 chip0423_858732 PBMC +8564 CAASETSYDKVIF TRAV13-1*01 TRAJ50*01 CASSSTGGGDQPQHF TRBV7-9*01 TRBJ1-5*01 HLA-B*08:01 B2M MHCI RAKFKQLL BZLF1 EBV PMID:34811538 tetramer-sort yes amplicon-seq effector memory T cells T1D T1D_4 chip0423_76355 PBMC +8565 CAEIPRNTGKLIF TRAV5*01 TRAJ37*01 CAWTGASGGAEQFF TRBV30*01 TRBJ2-1*01 HLA-A*02:01 B2M MHCI GIIYIIYKL P3A CoxsackievirusB PMID:34811538 tetramer-sort yes amplicon-seq Naive T cells healthy healthy_3 chip0423_68122 PBMC +8566 CIVRSNGgg?GCQGRLLF TRAV26-1*01 TRAJ42*01 CASSDFQGSTEAFF TRBV2*01 TRBJ1-1*01 HLA-A*02:01 B2M MHCI LLAGIGTVPI PGT HomoSapiens PMID:34811538 tetramer-sort yes amplicon-seq Naive T cells T1D T1D_6 chip0423_302372 PBMC +8567 CVVGPGNRDDKIIF TRAV12-1*01 TRAJ30*01 CSAMTGVGQPQHF TRBV20-1*01 TRBJ1-5*01 HLA-A*02:01 B2M MHCI LLAGIGTVPI PGT HomoSapiens PMID:34811538 tetramer-sort yes amplicon-seq Naive T cells T1D T1D_6 chip0423_212724 PBMC +8569 CSVGTGGTNEKLFF TRBV29-1*01 TRBJ1-4*01 HLA-A*02:01 B2M MHCI GLCTLVAML BLMF1 EBV PMID:34811538 tetramer-sort yes amplicon-seq effector memory T cells T1D T1D_6 chip0423_377185 PBMC +8570 CASSLVQGVHNEQFF TRBV7-9*01 TRBJ2-1*01 HLA-B*08:01 B2M MHCI RAKFKQLL BZLF1 EBV PMID:34811538 tetramer-sort yes amplicon-seq effector T cells T1D T1D_5 chip0423_232062 PBMC +8571 CIVFNDYKLSF TRAV26-1*01 TRAJ20*01 CASRGAGgg?TNDRGAVF TRBV27*01 TRBJ2-2*01 HLA-B*08:01 B2M MHCI YLKTNLFL G6PC2 HomoSapiens PMID:34811538 tetramer-sort yes amplicon-seq transitional T cells between effector and memory populations T1D T1D_5 chip0423_832018 PBMC +8572 CASSSGLAGGSHTGELFF TRBV11-1*01 TRBJ2-2*01 HLA-B*08:01 B2M MHCI RAKFKQLL BZLF1 EBV PMID:34811538 tetramer-sort yes amplicon-seq effector memory T cells T1D T1D_5 chip0423_637274 PBMC +8573 CIVREGGGADGLTF TRAV26-1*01 TRAJ45*01 CASSLAVGEGPQHF TRBV7-9*01 TRBJ1-5*01 HLA-B*08:01 B2M MHCI RAKFKQLL BZLF1 EBV PMID:34811538 tetramer-sort yes amplicon-seq effector T cells T1D T1D_4 chip0423_107733 PBMC +8574 CVVNPSRGKAAGNKLTF TRAV12-1*01 TRAJ17*01 CASSLEGQASSYEQYF TRBV5-1*01 TRBJ2-7*01 HLA-B*08:01 B2M MHCI RAKFKQLL BZLF1 EBV PMID:34811538 tetramer-sort yes amplicon-seq effector memory T cells healthy healthy_4 chip0423_45180 PBMC +8575 CSVGSGDYEQYF TRBV29-1*01 TRBJ2-7*01 HLA-B*08:01 B2M MHCI RAKFKQLL BZLF1 EBV PMID:34811538 tetramer-sort yes amplicon-seq effector memory T cells T1D T1D_4 chip0423_434955 PBMC +8576 CAASETSYDKVIF TRAV13-1*01 TRAJ50*01 CASSLLGTVDNEQFF TRBV7-9*01 TRBJ2-1*01 HLA-B*08:01 B2M MHCI RAKFKQLL BZLF1 EBV PMID:34811538 tetramer-sort yes amplicon-seq effector memory T cells T1D T1D_5 chip0423_369946 PBMC +8577 CASQLAGGTGELFF TRBV24-1*01 TRBJ2-2*01 HLA-B*08:01 B2M MHCI RAKFKQLL BZLF1 EBV PMID:34811538 tetramer-sort yes amplicon-seq effector memory T cells T1D T1D_5 chip0423_871463 PBMC +8578 CAVRTPLVF TRAV12-2*01 TRAJ29*01 CSASYGSGNEQFF TRBV20-1*01 TRBJ2-1*01 HLA-A*02:01 B2M MHCI LLAGIGTVPI PGT HomoSapiens PMID:34811538 tetramer-sort yes amplicon-seq Naive T cells healthy healthy_3 chip0423_244309 PBMC +8579 CVVSDTNQAGTALIF TRAV8-2*01 TRAJ15*01 CASSPLAGGGTDTQDF TRBV6-1*01 TRBJ2-3*01 HLA-A*02:01 B2M MHCI SLVALGINAV POL HCV PMID:34811538 tetramer-sort yes amplicon-seq Naive T cells T1D T1D_4 chip0423_159982 PBMC +8580 CAAAETSYDKVIF TRAV13-1*01 TRAJ50*01 CASQLAGGTGELFF TRBV24-1*01 TRBJ2-2*01 HLA-B*08:01 B2M MHCI RAKFKQLL BZLF1 EBV PMID:34811538 tetramer-sort yes amplicon-seq effector T cells T1D T1D_5 chip0423_313012 PBMC +8581 CGAGTAAYKLSF TRAV34*01 TRAJ20*01 HLA-A*02:01 B2M MHCI RGPGRAFVTI GP160 HIV-1 PMID:34811538 tetramer-sort yes amplicon-seq Naive T cells healthy healthy_3 chip0423_182813 PBMC +8582 CAAIETSYDKVIF TRAV13-1*01 TRAJ50*01 CSVGGNTEAFF TRBV29-1*01 TRBJ1-1*01 HLA-B*08:01 B2M MHCI RAKFKQLL BZLF1 EBV PMID:34811538 tetramer-sort yes amplicon-seq effector memory T cells T1D T1D_5 chip0423_60057 PBMC +8583 CAVSDPYNFNKFYF TRAV8-6*01 TRAJ21*01 CASTPTAGASNEQFF TRBV27*01 TRBJ2-1*01 HLA-A*02:01 B2M MHCI YVLDHLIVV BRLF1 EBV PMID:34811538 tetramer-sort yes amplicon-seq Naive T cells T1D T1D_4 chip0423_589206 PBMC +8584 CAVSLGAGKSTF TRAV8-4*01 TRAJ27*01 CASSLTGGNMNTEAFF TRBV7-3*01 TRBJ1-1*01 HLA-A*02:01 B2M MHCI FMYSDFHFI PA InfluenzaA PMID:34811538 tetramer-sort yes amplicon-seq Naive T cells T1D T1D_6 chip0423_380257 PBMC +8585 CILPLPGGTSFGQLTV TRAV26-2*01 TRAJ52*01 CASSLGQAYEQYF TRBV7-8*01 TRBJ2-7*01 HLA-B*08:01 B2M MHCI FLRGRAYGL EBNA3A EBV PMID:34811538 tetramer-sort yes amplicon-seq effector memory T cells T1D T1D_6 chip0423_285520 PBMC +8586 CASSVSGAPYEQYF TRBV9*01 TRBJ2-7*01 HLA-B*08:01 B2M MHCI FLRGRAYGL EBNA3A EBV PMID:34811538 tetramer-sort yes amplicon-seq effector memory T cells T1D T1D_6 chip0423_218029 PBMC +8587 CAMSHTGRRALTF TRAV12-3*01 TRAJ5*01 CASSQGGEQYF TRBV4-1*01,TRBV4-3*01 TRBJ2-7*01 HLA-B*08:01 B2M MHCI LNHLKATPI IAPP HomoSapiens PMID:34811538 tetramer-sort yes amplicon-seq Naive T cells T1D T1D_6 chip0423_797252 PBMC +8588 CASSPTTARTGNGYTF TRBV3-1*01 TRBJ1-2*01 HLA-B*08:01 B2M MHCI RAKFKQLL BZLF1 EBV PMID:34811538 tetramer-sort yes amplicon-seq effector memory T cells T1D T1D_5 chip0423_760909 PBMC +8589 CAVSDGNKLVF TRAV29/DV5*01 TRAJ47*01 CASSWAGGYEQYF TRBV27*01 TRBJ2-7*01 HLA-A*02:01 B2M MHCI VVTGVLVYL ZNT8 HomoSapiens PMID:34811538 tetramer-sort yes amplicon-seq Naive T cells healthy healthy_3 chip0423_619590 PBMC +8590 CAASETSYDKVIF TRAV13-1*01 TRAJ50*01 CASSWLGDRYNSPLHF TRBV7-9*01 TRBJ1-6*01 HLA-B*08:01 B2M MHCI RAKFKQLL BZLF1 EBV PMID:34811538 tetramer-sort yes amplicon-seq effector memory T cells T1D T1D_5 chip0423_484978 PBMC +8591 CAMSWGNNAGNMLTF TRAV12-3*01 TRAJ39*01 HLA-A*02:01 B2M MHCI LLAGIGTVPI PGT HomoSapiens PMID:34811538 tetramer-sort yes amplicon-seq Naive T cells T1D T1D_4 chip0423_762892 PBMC +8592 CASSLLGGAAGEQFF TRBV7-9*01 TRBJ2-1*01 HLA-B*08:01 B2M MHCI RAKFKQLL BZLF1 EBV PMID:34811538 tetramer-sort yes amplicon-seq effector memory T cells T1D T1D_5 chip0423_583234 PBMC +8593 CASSLSVSSYTDTQYF TRBV27*01 TRBJ2-3*01 HLA-A*02:01 B2M MHCI YVLDHLIVV BRLF1 EBV PMID:34811538 tetramer-sort yes amplicon-seq effector T cells T1D T1D_4 chip0423_570773 PBMC +8594 CASSLLGVPSTDTQYF TRBV12-3*01,TRBV12-4*01 TRBJ2-3*01 HLA-A*02:01 B2M MHCI LLAGIGTVPI PGT HomoSapiens PMID:34811538 tetramer-sort yes amplicon-seq Naive T cells healthy healthy_3 chip0423_425988 PBMC +8595 CAVRDIPGDSNYQLIW TRAV3*01 TRAJ33*01 CSARDSTLPDNSPLHF TRBV20-1*01 TRBJ1-6*01 HLA-A*01:01 B2M MHCI LVSDGGPNLY PB1 InfluenzaA PMID:34811538 tetramer-sort yes amplicon-seq transitional T cells between effector and memory populations healthy healthy_3 chip0423_2201 PBMC +8596 CASSPRGGGELFF TRBV28*01 TRBJ2-2*01 HLA-A*01:01 B2M MHCI HSNLNDATY NP InfluenzaA PMID:34811538 tetramer-sort yes amplicon-seq central memory T cells healthy healthy_3 chip0423_617823 PBMC +8598 CILPLAGGTSYGKLTF TRAV26-2*01 TRAJ52*01 CASSLGQAYEQYF TRBV7-8*01 TRBJ2-7*01 HLA-B*08:01 B2M MHCI FLRGRAYGL EBNA3A EBV PMID:34811538 tetramer-sort yes amplicon-seq effector memory T cells T1D T1D_6 chip0423_491664 PBMC +8599 CASTQVDRPNYGYTF TRBV7-9*01 TRBJ1-2*01 HLA-B*08:01 B2M MHCI RAKFKQLL BZLF1 EBV PMID:34811538 tetramer-sort yes amplicon-seq effector memory T cells T1D T1D_5 chip0423_70708 PBMC +8600 CAMRAIEGANNLFF TRAV14/DV4*01 TRAJ36*01 HLA-B*08:01 B2M MHCI RAKFKQLL BZLF1 EBV PMID:34811538 tetramer-sort yes amplicon-seq effector T cells T1D T1D_5 chip0423_234451 PBMC +8601 CAMSYSGGSNYKLTF TRAV12-3*01 TRAJ53*01 CSVGSGDYEQYF TRBV29-1*01 TRBJ2-7*01 HLA-B*08:01 B2M MHCI RAKFKQLL BZLF1 EBV PMID:34811538 tetramer-sort yes amplicon-seq effector memory T cells T1D T1D_4 chip0423_99044 PBMC +8602 CAYRMNYGGSQGTLIF TRAV38-2/DV8*01 TRAJ42*01 CASSFQGGHEQFF TRBV7-2*01 TRBJ2-1*01 HLA-B*08:01 B2M MHCI EAKQKGFVPF GAD2 HomoSapiens PMID:34811538 tetramer-sort yes amplicon-seq Naive T cells T1D T1D_4 chip0423_453397 PBMC +8603 CASSLAVGEGPQHF TRBV7-9*01 TRBJ1-5*01 HLA-B*08:01 B2M MHCI RAKFKQLL BZLF1 EBV PMID:34811538 tetramer-sort yes amplicon-seq effector memory T cells T1D T1D_4 chip0423_446112 PBMC +8604 CSVGTSYGYTF TRBV29-1*01 TRBJ1-2*01 HLA-B*08:01 B2M MHCI RAKFKQLL BZLF1 EBV PMID:34811538 tetramer-sort yes amplicon-seq effector memory T cells T1D T1D_5 chip0423_351071 PBMC +8605 CASSRGDGELFF TRBV12-3*01,TRBV12-4*01 TRBJ2-2*01 HLA-A*02:01 B2M MHCI HLCGSHLVEA PPI HomoSapiens PMID:34811538 tetramer-sort yes amplicon-seq Naive T cells T1D T1D_6 chip0423_856296 PBMC +8606 CSVSPGQGYEQYF TRBV29-1*01 TRBJ2-7*01 HLA-A*01:01 B2M MHCI LTSLTILQLY G6PC2 HomoSapiens PMID:34811538 tetramer-sort yes amplicon-seq Naive T cells T1D T1D_5 chip0423_693365 PBMC +8607 CAVTFNR??cTASKLTF TRAV8-1*01 TRAJ44*01 CASSLEGQASSYEQYF TRBV5-1*01 TRBJ2-7*01 HLA-A*02:01 B2M MHCI CLGGLLTMV LMP2A EBV PMID:34811538 tetramer-sort yes amplicon-seq effector memory T cells T1D T1D_4 chip0423_170877 PBMC +8608 CAVGTMAct?SNTGKLIF TRAV8-3*01 TRAJ37*01 HLA-B*08:01 B2M MHCI ELRSRYWAI NP InfluenzaA PMID:34811538 tetramer-sort yes amplicon-seq transitional T cells between effector and memory populations T1D T1D_6 chip0423_21521 PBMC +8609 CASSHTQGGTQYF TRBV4-1*01 TRBJ2-3*01 HLA-A*02:01 B2M MHCI LALWGPDPAA INS HomoSapiens PMID:34811538 tetramer-sort yes amplicon-seq central memory T cells healthy healthy_4 chip0423_575494 PBMC +8610 CASSPGLMNTGELFF TRBV12-3*01,TRBV12-4*01 TRBJ2-2*01 HLA-A*02:01 B2M MHCI ALAGIGILTV MART1 HomoSapiens PMID:34811538 tetramer-sort yes amplicon-seq Naive T cells T1D T1D_6 chip0423_130925 PBMC +8611 CSAGRDGTNEKLFF TRBV29-1*01 TRBJ1-4*01 HLA-A*02:01 B2M MHCI GLCTLVAML BLMF1 EBV PMID:34811538 tetramer-sort yes amplicon-seq effector memory T cells T1D T1D_6 chip0423_858261 PBMC +8612 CASSLAPGGYEQYF TRBV7-2*01 TRBJ2-7*01 HLA-B*08:01 B2M MHCI YAKWKLCSA ZNT8 HomoSapiens PMID:34811538 tetramer-sort yes amplicon-seq Naive T cells T1D T1D_6 chip0423_360786 PBMC +8613 CAEMETSYDKVIF TRAV13-2*01 TRAJ50*01 CASTHPQDVNTGELFF TRBV7-9*01 TRBJ2-2*01 HLA-B*08:01 B2M MHCI RAKFKQLL BZLF1 EBV PMID:34811538 tetramer-sort yes amplicon-seq effector memory T cells T1D T1D_5 chip0423_231767 PBMC +8614 CASSGRGGFYGYTF TRBV7-9*01 TRBJ1-2*01 HLA-B*08:01 B2M MHCI YLKDQQLL gp160 HIV-1 PMID:34811538 tetramer-sort yes amplicon-seq Naive T cells T1D T1D_5 chip0423_144221 PBMC +8615 CASSHRGTEAFF TRBV28*01 TRBJ1-1*01 HLA-A*02:01 B2M MHCI LLAGIGTVPI PGT HomoSapiens PMID:34811538 tetramer-sort yes amplicon-seq Naive T cells T1D T1D_6 chip0423_134939 PBMC +8616 CSAPGTSGSQEETQYF TRBV20-1*01 TRBJ2-5*01 HLA-A*02:01 B2M MHCI FLLSLFSLWL ZNT8 HomoSapiens PMID:34811538 tetramer-sort yes amplicon-seq Naive T cells healthy healthy_3 chip0423_110397 PBMC +8617 CAFTLWGNEKLTF TRAV38-1*01 TRAJ48*01 CASGGPGNDYGYTF TRBV5-6*01 TRBJ1-2*01 HLA-B*08:01 B2M MHCI ILKGKFQTA NP InfluenzaA PMID:34811538 tetramer-sort yes amplicon-seq Naive T cells T1D T1D_5 chip0423_882609 PBMC +8619 CAVSDGEGAQQLVF TRAV8-6*01 TRAJ54*01 CASSLTVLAGPNTEAFF TRBV7-3*01 TRBJ1-1*01 HLA-B*08:01 B2M MHCI RAKFKQLL BZLF1 EBV PMID:34811538 tetramer-sort yes amplicon-seq effector memory T cells T1D T1D_4 chip0423_358599 PBMC +8620 CSAGRDGTNEKLFF TRBV29-1*01 TRBJ1-4*01 HLA-A*02:01 B2M MHCI GLCTLVAML BLMF1 EBV PMID:34811538 tetramer-sort yes amplicon-seq effector memory T cells T1D T1D_6 chip0423_568251 PBMC +8621 CAAAETSYDKVIF TRAV13-1*01 TRAJ50*01 CASQLAGGTGELFF TRBV24-1*01 TRBJ2-2*01 HLA-B*08:01 B2M MHCI RAKFKQLL BZLF1 EBV PMID:34811538 tetramer-sort yes amplicon-seq effector memory T cells T1D T1D_5 chip0423_402838 PBMC +8622 CASSSGQAYEQYF TRBV7-8*01 TRBJ2-7*01 HLA-B*08:01 B2M MHCI FLRGRAYGL EBNA3A EBV PMID:34811538 tetramer-sort yes amplicon-seq effector memory T cells healthy healthy_4 chip0423_293396 PBMC +8623 CAVSDGEGAQKLVF TRAV8-6*01 TRAJ54*01 CASSLTVLAGPNTEAFF TRBV7-3*01 TRBJ1-1*01 HLA-B*08:01 B2M MHCI RAKFKQLL BZLF1 EBV PMID:34811538 tetramer-sort yes amplicon-seq effector memory T cells T1D T1D_4 chip0423_571026 PBMC +8624 CASSYATGHLGPSTDTQYF TRBV6-2*01,TRBV6-3*01 TRBJ2-3*01 HLA-B*08:01 B2M MHCI HLKRNIVV GFAP HomoSapiens PMID:34811538 tetramer-sort yes amplicon-seq Naive T cells T1D T1D_6 chip0423_548223 PBMC +8625 CAVGENYGQNFVF TRAV21*01 TRAJ26*01 CASLPTPHSDSGNSNTEAFF TRBV5-1*01 TRBJ1-1*01 HLA-B*08:01 B2M MHCI RAKFKQLL BZLF1 EBV PMID:34811538 tetramer-sort yes amplicon-seq effector memory T cells T1D T1D_4 chip0423_538656 PBMC +8627 CASSSGQAYEQYF TRBV7-8*01 TRBJ2-7*01 HLA-B*08:01 B2M MHCI FLRGRAYGL EBNA3A EBV PMID:34811538 tetramer-sort yes amplicon-seq effector memory T cells healthy healthy_4 chip0423_491817 PBMC +8629 CAALETSYDKVIF TRAV13-1*01 TRAJ50*01 CASSPDGSTGELFF TRBV12-3*01,TRBV12-4*01 TRBJ2-2*01 HLA-B*08:01 B2M MHCI RAKFKQLL BZLF1 EBV PMID:34811538 tetramer-sort yes amplicon-seq effector memory T cells T1D T1D_5 chip0423_305194 PBMC +8630 CILPLAGGTRSGALTF TRAV26-2*01 TRAJ52*01 CASSLGQAYEQYF TRBV7-8*01 TRBJ2-7*01 HLA-B*08:01 B2M MHCI FLRGRAYGL EBNA3A EBV PMID:34811538 tetramer-sort yes amplicon-seq effector memory T cells T1D T1D_6 chip0423_130139 PBMC +8631 CASSMMTGDSYNSPLHF TRBV19*01 TRBJ1-6*01 HLA-A*01:01 B2M MHCI CTELKLSDY NP InfluenzaA PMID:34811538 tetramer-sort yes amplicon-seq effector T cells T1D T1D_5 chip0423_25673 PBMC +8632 CASSLNRNQPQHF TRBV7-3*01 TRBJ1-5*01 HLA-B*08:01 B2M MHCI LWMRLLPL INS HomoSapiens PMID:34811538 tetramer-sort yes amplicon-seq Naive T cells T1D T1D_5 chip0423_7676 PBMC +8633 CASSSLGQKNTEAFF TRAV36/DV7*01 TRAJ40*01 CASSSLGQKNTEAFF TRBV7-9*01 TRBJ1-1*01 HLA-B*08:01 B2M MHCI RAKFKQLL BZLF1 EBV PMID:34811538 tetramer-sort yes amplicon-seq effector memory T cells T1D T1D_5 chip0423_298023 PBMC +8634 CIV*HVFR??tGGAAGLTF TRAV26-1*01 TRAJ45*01 CASSPADSNFEDEQYF TRBV12-3*01,TRBV12-4*01 TRBJ2-7*01 HLA-B*08:01 B2M MHCI RAKFKQLL BZLF1 EBV PMID:34811538 tetramer-sort yes amplicon-seq effector memory T cells T1D T1D_5 chip0423_182778 PBMC +8635 CAVNLHGNHFYF TRAV12-2*01 TRAJ49*01 YASSYAGQGDGYTF TRBV6-5*01 TRBJ1-2*01 HLA-A*02:01 B2M MHCI LLAGIGTVPI PGT HomoSapiens PMID:34811538 tetramer-sort yes amplicon-seq Naive T cells healthy healthy_3 chip0423_60390 PBMC +8636 CAVGTMAct?SNTGKLIF TRAV2*01 TRAJ37*01 CASSLAGREGTQYF TRBV11-3*01 TRBJ2-3*01 HLA-B*08:01 B2M MHCI ELRSRYWAI NP InfluenzaA PMID:34811538 tetramer-sort yes amplicon-seq transitional T cells between effector and memory populations T1D T1D_6 chip0423_246860 PBMC +8637 CASSSAGGGPEQYF TRBV7-9*01 TRBJ2-7*01 HLA-B*08:01 B2M MHCI RAKFKQLL BZLF1 EBV PMID:34811538 tetramer-sort yes amplicon-seq effector memory T cells T1D T1D_5 chip0423_249872 PBMC +8639 CAAAETSYDKVIF TRAV13-1*01 TRAJ50*01 CASQLAGGTGELFF TRBV24-1*01 TRBJ2-2*01 HLA-B*08:01 B2M MHCI RAKFKQLL BZLF1 EBV PMID:34811538 tetramer-sort yes amplicon-seq effector memory T cells T1D T1D_5 chip0423_770017 PBMC +8640 CASSQVNNPGDGYTF TRBV14*01 TRBJ1-2*01 HLA-B*08:01 B2M MHCI QAKWRLQTL EBNA3A EBV PMID:34811538 tetramer-sort yes amplicon-seq effector memory T cells tet_neg chip0423_756826 PBMC +8641 CAMTISNFGNEKLTF TRAV12-3*01 TRAJ48*01 HLA-A*02:01 B2M MHCI LLAGIGTVPI PGT HomoSapiens PMID:34811538 tetramer-sort yes amplicon-seq Naive T cells T1D T1D_4 chip0423_348820 PBMC +8642 CAASETSYDKVIF TRAV13-1*01 TRAJ50*01 CASRPLGGEQYF TRBV6-1*01 TRBJ2-7*01 HLA-B*08:01 B2M MHCI RAKFKQLL BZLF1 EBV PMID:34811538 tetramer-sort yes amplicon-seq effector T cells T1D T1D_5 chip0423_29671 PBMC +8643 CAANQAGTALIF TRAV12-2*01 TRAJ15*01 CASSPLGARGQFF TRBV28*01 TRBJ2-1*01 HLA-A*02:01 B2M MHCI ALAGIGILTV MART1 HomoSapiens PMID:34811538 tetramer-sort yes amplicon-seq Naive T cells T1D T1D_4 chip0423_187372 PBMC +8644 CASSWTASYEQYF TRBV27*01 TRBJ2-7*01 HLA-A*02:01 B2M MHCI YVLDHLIVV BRLF1 EBV PMID:34811538 tetramer-sort yes amplicon-seq Naive T cells T1D T1D_6 chip0423_141615 PBMC +8645 CANSDDGMNTEAFF TRBV10-2*01 TRBJ1-1*01 HLA-A*02:01 B2M MHCI CLGGLLTMV LMP2A EBV PMID:34811538 tetramer-sort yes amplicon-seq central memory T cells healthy healthy_3 chip0423_509447 PBMC +8646 CAMSFSNFGNEKLTF TRAV12-3*01 TRAJ48*01 CSATVASGPPTDTQYF TRBV20-1*01 TRBJ2-3*01 HLA-A*02:01 B2M MHCI LLAGIGTVPI PGT HomoSapiens PMID:34811538 tetramer-sort yes amplicon-seq Naive T cells T1D T1D_4 chip0423_146494 PBMC +8647 CAANIRFSGGYNKLIF TRAV12-2*01 TRAJ4*01 HLA-B*08:01 B2M MHCI RAKFKQLL BZLF1 EBV PMID:34811538 tetramer-sort yes amplicon-seq effector memory T cells T1D T1D_5 chip0423_750562 PBMC +8648 CASSWGQGPTYEQYF TRBV4-1*01 TRBJ2-7*01 HLA-B*08:01 B2M MHCI RAKFKQLL BZLF1 EBV PMID:34811538 tetramer-sort yes amplicon-seq effector T cells healthy healthy_4 chip0423_657461 PBMC +8649 CAVRVLNSGYALNF TRAV1-1*01 TRAJ41*01 CASSLDSRYTF TRBV5-1*01 TRBJ1-2*01 HLA-B*08:01 B2M MHCI MAALPRLIAF GAD2 HomoSapiens PMID:34811538 tetramer-sort yes amplicon-seq Naive T cells T1D T1D_4 chip0423_293030 PBMC +8650 CAGGPDGQKLLF TRAV12-2*01 TRAJ16*01 CASSIRAAYEQYF TRBV19*01 TRBJ2-7*01 HLA-A*02:01 B2M MHCI GILGFVFTL M1 InfluenzaA PMID:34811538 tetramer-sort yes amplicon-seq transitional T cells between effector and memory populations T1D T1D_6 chip0423_837112 PBMC +8651 CALSGSG??cGS*KLVF TRAV19*01 TRAJ57*01 CASSLMTGSYTEAFF TRBV19*01 TRBJ1-1*01 HLA-A*01:01 B2M MHCI STNVGSNTY IAPP HomoSapiens PMID:34811538 tetramer-sort yes amplicon-seq Naive T cells T1D T1D_6 chip0423_287872 PBMC +8652 CIVRANDYKLSF TRAV26-1*01 TRAJ20*01 CASSQYPYSNQPQHF TRBV3-1*01 TRBJ1-5*01 HLA-A*01:01 B2M MHCI PTHEEHLFY G6PC2 HomoSapiens PMID:34811538 tetramer-sort yes amplicon-seq Naive T cells T1D T1D_6 chip0423_38683 PBMC +8653 CASSVPQTGAGTGELFF TRBV9*01 TRBJ2-2*01 HLA-B*08:01 B2M MHCI RAKFKQLL BZLF1 EBV PMID:34811538 tetramer-sort yes amplicon-seq transitional T cells between effector and memory populations T1D T1D_5 chip0423_587988 PBMC +8654 CSAIEFRDPNQPQHF TRBV20-1*01 TRBJ1-5*01 HLA-A*02:01 B2M MHCI YLLEMLWRL LMP1 EBV PMID:34811538 tetramer-sort yes amplicon-seq central memory T cells T1D T1D_4 chip0423_515572 PBMC +8655 CASSLGQAYEQYF TRBV7-8*01 TRBJ2-7*01 HLA-B*08:01 B2M MHCI FLRGRAYGL EBNA3A EBV PMID:34811538 tetramer-sort yes amplicon-seq effector memory T cells T1D T1D_6 chip0423_265896 PBMC +8656 CIVIVGCac?GTASILTF TRAV26-1*01 TRAJ44*01 CASSLAVGEGPQHF TRBV7-9*01 TRBJ1-5*01 HLA-B*08:01 B2M MHCI RAKFKQLL BZLF1 EBV PMID:34811538 tetramer-sort yes amplicon-seq effector memory T cells T1D T1D_4 chip0423_605880 PBMC +8657 CAVAAITGGGNKLPF TRAV12-2*01 TRAJ10*01 CASSMGGGHEQYS TRBV27*01 TRBJ2-7*01 HLA-B*08:01 B2M MHCI LNHLKATPI IAPP HomoSapiens PMID:34811538 tetramer-sort yes amplicon-seq Naive T cells T1D T1D_6 chip0423_857911 PBMC +8658 CASSQVNNPGDGYTF TRBV14*01 TRBJ1-2*01 HLA-B*08:01 B2M MHCI QAKWRLQTL EBNA3A EBV PMID:34811538 tetramer-sort yes amplicon-seq effector memory T cells T1D T1D_4 chip0423_392535 PBMC +8659 CAAEETSYDKVIF TRAV13-1*01 TRAJ50*01 CASSFTGSPSGANVLTF TRBV12-3*01,TRBV12-4*01 TRBJ2-6*01 HLA-B*08:01 B2M MHCI RAKFKQLL BZLF1 EBV PMID:34811538 tetramer-sort yes amplicon-seq effector memory T cells T1D T1D_5 chip0423_384669 PBMC +8660 CAVRDYGQNFVF TRAV3*01 TRAJ26*01 CAWRVGTRGYEQYF TRBV30*01 TRBJ2-7*01 HLA-B*08:01 B2M MHCI MMIARFKM GAD2 HomoSapiens PMID:34811538 tetramer-sort yes amplicon-seq Naive T cells T1D T1D_5 chip0423_555816 PBMC +8661 CASRDLDFNYGYTF TRBV19*01 TRBJ1-2*01 HLA-A*02:01 B2M MHCI ELAGIGILTV MART1 HomoSapiens PMID:34811538 tetramer-sort yes amplicon-seq Naive T cells T1D T1D_6 chip0423_476990 PBMC +8662 CAVGSYNQGGKLIF TRAV8-3*01 TRAJ23*01 HLA-B*08:01 B2M MHCI QAKWRLQTL EBNA3A EBV PMID:34811538 tetramer-sort yes amplicon-seq Naive T cells T1D T1D_5 chip0423_238056 PBMC +8663 CASSSASNTEAFF TRAV36/DV7*01 TRAJ40*01 CASSSASNTEAFF TRBV7-9*01 TRBJ1-1*01 HLA-B*08:01 B2M MHCI RAKFKQLL BZLF1 EBV PMID:34811538 tetramer-sort yes amplicon-seq effector memory T cells T1D T1D_5 chip0423_640670 PBMC +8664 CAASETSYDKVIF TRAV13-1*01 TRAJ50*01 CASSLLGNNNSPPHF TRBV7-9*01 TRBJ1-6*01 HLA-B*08:01 B2M MHCI RAKFKQLL BZLF1 EBV PMID:34811538 tetramer-sort yes amplicon-seq effector memory T cells T1D T1D_5 chip0423_200600 PBMC +8665 CAASDRLPGGSYIPTF TRAV13-1*01 TRAJ6*01 CSATNQYDGPDTEAFF TRBV20-1*01 TRBJ1-1*01 HLA-B*08:01 B2M MHCI RAKFKQLL BZLF1 EBV PMID:34811538 tetramer-sort yes amplicon-seq transitional T cells between effector and memory populations T1D T1D_4 chip0423_762831 PBMC +8667 CAASILMVNAGQSPL TRAV23/DV6*01 TRAJ27*01 CASRGTTYNEQFF TRBV19*01 TRBJ2-1*01 HLA-A*02:01 B2M MHCI LLAGIGTVPI PGT HomoSapiens PMID:34811538 tetramer-sort yes amplicon-seq Naive T cells T1D T1D_4 chip0423_442074 PBMC +8668 CAVSDGEGAQKLVF TRAV8-6*01 TRAJ54*01 CASSLTVLAGPNTEAFF TRBV7-3*01 TRBJ1-1*01 HLA-B*08:01 B2M MHCI RAKFKQLL BZLF1 EBV PMID:34811538 tetramer-sort yes amplicon-seq effector memory T cells T1D T1D_4 chip0423_297670 PBMC +8669 CAMREGESSASKIIF TRAV14/DV4*01 TRAJ3*01 CSGGEAYGYTF TRBV29-1*01 TRBJ1-2*01 HLA-B*08:01 B2M MHCI RAKFKQLL BZLF1 EBV PMID:34811538 tetramer-sort yes amplicon-seq effector T cells T1D T1D_5 chip0423_883620 PBMC +8670 LCQ*YRac??ttLTEAFF TRBV19*01 TRBJ1-1*01 HLA-B*08:01 B2M MHCI FSLKKGAAA GAD2 HomoSapiens PMID:34811538 tetramer-sort yes amplicon-seq Naive T cells T1D T1D_5 chip0423_737531 PBMC +8671 CASSAARGREAFF TRBV13*01 TRBJ1-1*01 HLA-A*02:01 B2M MHCI RGPGRAFVTI GP160 HIV-1 PMID:34811538 tetramer-sort yes amplicon-seq Naive T cells T1D T1D_6 chip0423_338331 PBMC +8672 CASSPLGSNEKLFF TRBV7-9*01 TRBJ1-4*01 HLA-B*08:01 B2M MHCI RAKFKQLL BZLF1 EBV PMID:34811538 tetramer-sort yes amplicon-seq effector memory T cells T1D T1D_5 chip0423_38537 PBMC +8673 CAVNNARLMF TRAV12-2*01 TRAJ31*01 CASSLTSVSTDTQYF TRBV28*01 TRBJ2-3*01 HLA-A*02:01 B2M MHCI ALAGIGILTV MART1 HomoSapiens PMID:34811538 tetramer-sort yes amplicon-seq Naive T cells T1D T1D_4 chip0423_146472 PBMC +8674 PAVSDGEGAQPLVV TRAV8-6*01 TRAJ54*01 CASSLTVLAGPNTEAFF TRBV7-3*01 TRBJ1-1*01 HLA-B*08:01 B2M MHCI RAKFKQLL BZLF1 EBV PMID:34811538 tetramer-sort yes amplicon-seq effector memory T cells T1D T1D_4 chip0423_794911 PBMC +8675 CAVGTGGFKTIF TRAV16*01 TRAJ9*01 HLA-B*08:01 B2M MHCI MALWMRLL INS HomoSapiens PMID:34811538 tetramer-sort yes amplicon-seq Naive T cells T1D T1D_5 chip0423_852823 PBMC +8676 CAASETSYDKVIF TRAV13-1*01 TRAJ50*01 CASSLPTFYEQYF TRBV7-2*01 TRBJ2-7*01 HLA-B*08:01 B2M MHCI RAKFKQLL BZLF1 EBV PMID:34811538 tetramer-sort yes amplicon-seq effector memory T cells T1D T1D_5 chip0423_505090 PBMC +8677 CASRSKRGVGDTIYF TRBV12-3*01,TRBV12-4*01 TRBJ1-3*01 HLA-A*02:01 B2M MHCI LLAGIGTVPI PGT HomoSapiens PMID:34811538 tetramer-sort yes amplicon-seq Naive T cells T1D T1D_6 chip0423_100889 PBMC +8678 CAMTGGYQKVTF TRAV12-3*01 TRAJ13*01 CASSSPINSGNTIYF TRBV14*01 TRBJ1-3*01 HLA-A*02:01 B2M MHCI LLAGIGTVPI PGT HomoSapiens PMID:34811538 tetramer-sort yes amplicon-seq natural killer-like T cells healthy healthy_4 chip0423_525823 PBMC +8679 CALSEAQAGTALIF TRAV19*01 TRAJ15*01 CSVKDTKTYEQYF TRBV29-1*01 TRBJ2-7*01 HLA-A*02:01 B2M MHCI VLFGLGFAI IGRP HomoSapiens PMID:34811538 tetramer-sort yes amplicon-seq Naive T cells T1D T1D_6 chip0423_108985 PBMC +8680 CAVSDGEGAQKLVF TRAV8-6*01 TRAJ54*01 HLA-B*08:01 B2M MHCI RAKFKQLL BZLF1 EBV PMID:34811538 tetramer-sort yes amplicon-seq effector T cells T1D T1D_4 chip0423_826938 PBMC +8681 CASSFQEGDTEAFF TRBV6-2*01,TRBV6-3*01 TRBJ1-1*01 HLA-A*01:01 B2M MHCI VSATAGTTVY GAD2 HomoSapiens PMID:34811538 tetramer-sort yes amplicon-seq Naive T cells T1D T1D_6 chip0423_282183 PBMC +8682 CLLGGNGRR??gTGTASKLTF TRAV40*01 TRAJ44*01 CASSEDVGNQETQYF TRBV2*01 TRBJ2-5*01 HLA-A*01:01 B2M MHCI VSATAGTTVY GAD2 HomoSapiens PMID:34811538 tetramer-sort yes amplicon-seq Naive T cells T1D T1D_6 chip0423_167215 PBMC +8683 CAVSGRDDKIIF TRAV12-2*01 TRAJ30*01 CATQSGALTGELFF TRBV6-1*01 TRBJ2-2*01 HLA-A*02:01 B2M MHCI ALAGIGILTV MART1 HomoSapiens PMID:34811538 tetramer-sort yes amplicon-seq Naive T cells T1D T1D_6 chip0423_37735 PBMC +8685 CALISYAGKSTF TRAV19*01 TRAJ27*01 CASSIMGDTEAFF TRBV19*01 TRBJ1-1*01 HLA-A*01:01 B2M MHCI STNVGSNTY IAPP HomoSapiens PMID:34811538 tetramer-sort yes amplicon-seq Naive T cells healthy healthy_3 chip0423_523843 PBMC +8686 CIVRVAGDSWGQLQF TRAV26-1*01 TRAJ24*01 CASSSLGEDNQPQHF TRBV27*01 TRBJ1-5*01 HLA-B*08:01 B2M MHCI RAKFKQLL BZLF1 EBV PMID:34811538 tetramer-sort yes amplicon-seq effector memory T cells T1D T1D_4 chip0423_742263 PBMC +8687 CAVSDGEGAQKLVF TRAV8-6*01 TRAJ54*01 CASSLTVLAGPNTEAFF TRBV7-3*01 TRBJ1-1*01 HLA-B*08:01 B2M MHCI RAKFKQLL BZLF1 EBV PMID:34811538 tetramer-sort yes amplicon-seq effector memory T cells T1D T1D_4 chip0423_372837 PBMC +8688 CASSLRNNYGYTF TRBV11-3*01 TRBJ1-2*01 HLA-B*08:01 B2M MHCI YAKWKLCSA ZNT8 HomoSapiens PMID:34811538 tetramer-sort yes amplicon-seq transitional T cells between effector and memory populations T1D T1D_5 chip0423_99554 PBMC +8689 CATGGGPGVGPGTF TRAV17*01 TRAJ11*01 CASSKQGGGYGYTF TRBV6-1*01 TRBJ1-2*01 HLA-A*02:01 B2M MHCI FLYALALLL LMP2 EBV PMID:34811538 tetramer-sort yes amplicon-seq central memory T cells T1D T1D_4 chip0423_702134 PBMC +8690 CAALQGAQKLVF TRAV20*01 TRAJ54*01 CASGLVPGSSNEQFF TRBV12-5*01 TRBJ2-1*01 HLA-A*02:01 B2M MHCI RLLPLLALLAL INS HomoSapiens PMID:34811538 tetramer-sort yes amplicon-seq Naive T cells healthy healthy_3 chip0423_681022 PBMC +8691 CSGEWNTEAFF TRBV29-1*01 TRBJ1-1*01 HLA-A*02:01 B2M MHCI LLAGIGTVPI PGT HomoSapiens PMID:34811538 tetramer-sort yes amplicon-seq Naive T cells healthy healthy_4 chip0423_611262 PBMC +8692 CVVNIDARLLF TRAV12-1*01 TRAJ31*01 CASSLGQAYEQYF TRBV7-8*01 TRBJ2-7*01 HLA-B*08:01 B2M MHCI FLRGRAYGL EBNA3A EBV PMID:34811538 tetramer-sort yes amplicon-seq effector memory T cells T1D T1D_6 chip0423_164683 PBMC +8693 CASSIRSTDTQYF TRBV19*01 TRBJ2-3*01 HLA-A*02:01 B2M MHCI GILGFVFTL M1 InfluenzaA PMID:34811538 tetramer-sort yes amplicon-seq transitional T cells between effector and memory populations T1D T1D_6 chip0423_61409 PBMC +8694 CVVKPPGTYKYIF TRAV12-1*01 TRAJ40*01 CASRMMTGAGNTIYF TRBV2*01 TRBJ1-3*01 HLA-B*08:01 B2M MHCI YLKDQQLL gp160 HIV-1 PMID:34811538 tetramer-sort yes amplicon-seq Naive T cells T1D T1D_6 chip0423_664699 PBMC +8695 CASSRQGGAGGYTF TRBV6-1*01 TRBJ1-2*01 HLA-A*02:01 B2M MHCI FLYALALLL LMP2 EBV PMID:34811538 tetramer-sort yes amplicon-seq central memory T cells healthy healthy_3 chip0423_173499 PBMC +8696 CAMSLSNFGNEKLTF TRAV12-3*01 TRAJ48*01 HLA-A*02:01 B2M MHCI LLAGIGTVPI PGT HomoSapiens PMID:34811538 tetramer-sort yes amplicon-seq Naive T cells healthy healthy_3 chip0423_849127 PBMC +8697 CAVRDGAGAQQLVF TRAV8-6*01 TRAJ54*01 CASSLTVLAGPNTEAFF TRBV7-3*01 TRBJ1-1*01 HLA-B*08:01 B2M MHCI RAKFKQLL BZLF1 EBV PMID:34811538 tetramer-sort yes amplicon-seq effector T cells T1D T1D_4 chip0423_46675 PBMC +8698 CASSRYSVDTQYF TRBV19*01 TRBJ2-3*01 HLA-A*02:01 B2M MHCI GILGFVFTL M1 InfluenzaA PMID:34811538 tetramer-sort yes amplicon-seq effector T cells healthy healthy_3 chip0423_18214 PBMC +8699 CASSEGHSTIYF TRBV9*01 TRBJ1-3*01 HLA-A*01:01 B2M MHCI HSNLNDATY NP InfluenzaA PMID:34811538 tetramer-sort yes amplicon-seq central memory T cells healthy healthy_3 chip0423_837689 PBMC +8700 CASSLENEKLFF TRBV14*01 TRBJ1-4*01 HLA-A*02:01 B2M MHCI LLAGIGTVPI PGT HomoSapiens PMID:34811538 tetramer-sort yes amplicon-seq Naive T cells healthy healthy_4 chip0423_32544 PBMC +8701 CAMREGEAGGFKTIF TRAV14/DV4*01 TRAJ9*01 CASSSMTGSSYEQYF TRBV7-9*01 TRBJ2-7*01 HLA-B*08:01 B2M MHCI RAKFKQLL BZLF1 EBV PMID:34811538 tetramer-sort yes amplicon-seq effector memory T cells T1D T1D_5 chip0423_628887 PBMC +8702 CSVGGGRNVATNEKLFF TRBV20-1*01 TRBJ1-4*01 HLA-A*02:01 B2M MHCI LLAGIGTVPI PGT HomoSapiens PMID:34811538 tetramer-sort yes amplicon-seq Naive T cells T1D T1D_6 chip0423_359171 PBMC +8703 CIVRVVCac?GTASKLTS TRAV26-1*01 TRAJ44*01 HLA-B*08:01 B2M MHCI RAKFKQLL BZLF1 EBV PMID:34811538 tetramer-sort yes amplicon-seq effector memory T cells T1D T1D_4 chip0423_278470 PBMC +8704 CAALISNFGNEKLTF TRAV12-3*01 TRAJ48*01 CASSTTGSGNTIYF TRBV19*01 TRBJ1-3*01 HLA-A*02:01 B2M MHCI LLAGIGTVPI PGT HomoSapiens PMID:34811538 tetramer-sort yes amplicon-seq Naive T cells T1D T1D_4 chip0423_303626 PBMC +8705 CASSSGQAYEQYF TRBV7-8*01 TRBJ2-7*01 HLA-B*08:01 B2M MHCI FLRGRAYGL EBNA3A EBV PMID:34811538 tetramer-sort yes amplicon-seq effector memory T cells healthy healthy_4 chip0423_185946 PBMC +8706 CILPLAGGTSYGKLTF TRAV26-2*01 TRAJ52*01 CASSLGQAYEQYF TRBV7-8*01 TRBJ2-7*01 HLA-B*08:01 B2M MHCI FLRGRAYGL EBNA3A EBV PMID:34811538 tetramer-sort yes amplicon-seq effector memory T cells T1D T1D_6 chip0423_863474 PBMC +8707 CAICISNFGNEKLTF TRAV12-3*01 TRAJ48*01 CASASGVGSATEAFF TRBV6-1*01 TRBJ1-1*01 HLA-A*02:01 B2M MHCI LLAGIGTVPI PGT HomoSapiens PMID:34811538 tetramer-sort yes amplicon-seq Naive T cells T1D T1D_6 chip0423_716670 PBMC +8708 CIVREGGGADGLPF TRAV26-1*01 TRAJ45*01 CASSLAVGEGPQHF TRBV7-9*01 TRBJ1-5*01 HLA-B*08:01 B2M MHCI RAKFKQLL BZLF1 EBV PMID:34811538 tetramer-sort yes amplicon-seq effector memory T cells T1D T1D_4 chip0423_386606 PBMC +8709 CVPRWLAGGGHKLTF TRAV40*01 TRAJ10*01 CASSGQGAEAFF TRBV7-9*01 TRBJ1-1*01 HLA-B*08:01 B2M MHCI YAKWKLCSA ZNT8 HomoSapiens PMID:34811538 tetramer-sort yes amplicon-seq Naive T cells T1D T1D_6 chip0423_257061 PBMC +8710 CASSQVNNPGDGYTF TRBV14*01 TRBJ1-2*01 HLA-B*08:01 B2M MHCI QAKWRLQTL EBNA3A EBV PMID:34811538 tetramer-sort yes amplicon-seq effector memory T cells T1D T1D_4 chip0423_239144 PBMC +8711 CASQLAGGTGELFF TRBV24-1*01 TRBJ2-2*01 HLA-B*08:01 B2M MHCI RAKFKQLL BZLF1 EBV PMID:34811538 tetramer-sort yes amplicon-seq effector memory T cells T1D T1D_5 chip0423_867801 PBMC +8712 CAMRDPPDTGFQKLVF TRAV14/DV4*01 TRAJ8*01 CSVVSARLNTEAFF TRBV29-1*01 TRBJ1-1*01 HLA-A*02:01 B2M MHCI CLGGLLTMV LMP2A EBV PMID:34811538 tetramer-sort yes amplicon-seq Naive T cells T1D T1D_6 chip0423_466602 PBMC +8713 CASSQVNNPGDGYTF TRBV14*01 TRBJ1-2*01 HLA-B*08:01 B2M MHCI QAKWRLQTL EBNA3A EBV PMID:34811538 tetramer-sort yes amplicon-seq effector memory T cells T1D T1D_4 chip0423_681771 PBMC +8715 CAASDTGNQFYF TRAV29/DV5*01 TRAJ49*01 CASSLGLTWGTEAFF TRBV12-3*01,TRBV12-4*01 TRBJ1-1*01 HLA-A*02:01 B2M MHCI RGPGRAFVTI GP160 HIV-1 PMID:34811538 tetramer-sort yes amplicon-seq Naive T cells T1D T1D_6 chip0423_528202 PBMC +8716 CASSYFLDFSF TRBV5-6*01 TRBJ2-5*01 HLA-B*08:01 B2M MHCI EIYKRWII Gag HIV-1 PMID:34811538 tetramer-sort yes amplicon-seq Naive T cells T1D T1D_4 chip0423_868513 PBMC +8717 CAVGAISNFGNEKLTF TRAV8-3*01 TRAJ48*01 HLA-A*02:01 B2M MHCI VMNILLQYV GAD65 HomoSapiens PMID:34811538 tetramer-sort yes amplicon-seq Naive T cells T1D T1D_4 chip0423_185602 PBMC +8718 CAPTGSSGYSPLTF TRAV17*01 TRAJ11*01 CASSLQGGHIQYF TRBV6-1*01 TRBJ2-4*01 HLA-A*02:01 B2M MHCI FLYALALLL LMP2 EBV PMID:34811538 tetramer-sort yes amplicon-seq central memory T cells T1D T1D_4 chip0423_25248 PBMC +8720 CASSFTSGTDPELFF TRBV7-9*01 TRBJ2-2*01 HLA-B*08:01 B2M MHCI RAKFKQLL BZLF1 EBV PMID:34811538 tetramer-sort yes amplicon-seq effector memory T cells T1D T1D_5 chip0423_503518 PBMC +8721 CAMTLSNFGNEKLTF TRAV12-3*01 TRAJ48*01 CASSFSTSGRNEQFF TRBV11-1*01 TRBJ2-1*01 HLA-A*02:01 B2M MHCI LLAGIGTVPI PGT HomoSapiens PMID:34811538 tetramer-sort yes amplicon-seq Naive T cells T1D T1D_4 chip0423_326958 PBMC +8722 CAAAETSYDKVIF TRAV13-1*01 TRAJ50*01 CASQLAGGTGELFF TRBV24-1*01 TRBJ2-2*01 HLA-B*08:01 B2M MHCI RAKFKQLL BZLF1 EBV PMID:34811538 tetramer-sort yes amplicon-seq effector memory T cells T1D T1D_5 chip0423_680394 PBMC +8723 CAMREGRGYNFNKFYF TRAV14/DV4*01 TRAJ21*01 CASGPQGRAENTEAFF TRBV12-5*01 TRBJ1-1*01 HLA-B*08:01 B2M MHCI CPLSKILL LMP2A EBV PMID:34811538 tetramer-sort yes amplicon-seq Naive T cells T1D T1D_6 chip0423_532961 PBMC +8724 CAAAETSYDKVIF TRAV13-1*01 TRAJ50*01 CASQLAGGTGELFS TRBV24-1*01 TRBJ2-2*01 HLA-B*08:01 B2M MHCI RAKFKQLL BZLF1 EBV PMID:34811538 tetramer-sort yes amplicon-seq effector memory T cells T1D T1D_5 chip0423_855799 PBMC +8725 CAERHTGGFKTIF TRAV13-2*01 TRAJ9*01 HLA-B*08:01 B2M MHCI RAKFKQLL BZLF1 EBV PMID:34811538 tetramer-sort yes amplicon-seq effector T cells T1D T1D_5 chip0423_313 PBMC +8726 CAEDNQGGKLIF TRAV5*01 TRAJ23*01 CASSSRSANEQFF TRBV19*01 TRBJ2-1*01 HLA-A*02:01 B2M MHCI GILGFVFTL M1 InfluenzaA PMID:34811538 tetramer-sort yes amplicon-seq effector T cells healthy healthy_3 chip0423_379303 PBMC +8727 CASSLGGGQPQHF TRBV28*01 TRBJ1-5*01 HLA-A*02:01 B2M MHCI ALGIGILTV MART1 HomoSapiens PMID:34811538 tetramer-sort yes amplicon-seq Naive T cells T1D T1D_6 chip0423_361688 PBMC +8728 CAMSRANFGNEKLTF TRAV12-3*01 TRAJ48*01 CASSSTSGGAPGELFF TRBV5-4*01 TRBJ2-2*01 HLA-A*02:01 B2M MHCI LLAGIGTVPI PGT HomoSapiens PMID:34811538 tetramer-sort yes amplicon-seq Naive T cells T1D T1D_6 chip0423_98529 PBMC +8730 CASSSLSGGAGNEQFF TRBV7-9*01 TRBJ2-1*01 HLA-B*08:01 B2M MHCI RAKFKQLL BZLF1 EBV PMID:34811538 tetramer-sort yes amplicon-seq effector T cells T1D T1D_5 chip0423_778030 PBMC +8731 CAALKSNFGNEKLTF TRAV12-2*01 TRAJ48*01 CASSGAGGSTDTQYF TRBV2*01 TRBJ2-3*01 HLA-A*02:01 B2M MHCI LLAGIGTVPI PGT HomoSapiens PMID:34811538 tetramer-sort yes amplicon-seq Naive T cells T1D T1D_4 chip0423_633446 PBMC +8732 CASSLLGRSNTEAFL TRBV7-9*01 TRBJ1-1*01 HLA-B*08:01 B2M MHCI RAKFKQLL BZLF1 EBV PMID:34811538 tetramer-sort yes amplicon-seq effector memory T cells T1D T1D_5 chip0423_219906 PBMC +8733 CAVSDGEGAQKLVF TRAV8-6*01 TRAJ54*01 CASSLTVLAGPNTEAFF TRBV7-3*01 TRBJ1-1*01 HLA-B*08:01 B2M MHCI RAKFKQLL BZLF1 EBV PMID:34811538 tetramer-sort yes amplicon-seq effector T cells T1D T1D_4 chip0423_217676 PBMC +8734 CSVGAGGTNEKLFF TRBV29-1*01 TRBJ1-4*01 HLA-A*02:01 B2M MHCI GLCTLVAML BLMF1 EBV PMID:34811538 tetramer-sort yes amplicon-seq transitional T cells between effector and memory populations healthy healthy_4 chip0423_484794 PBMC +8735 CSASRDSYEQYF TRBV20-1*01 TRBJ2-7*01 HLA-A*02:01 B2M MHCI YLLEMLWRL LMP1 EBV PMID:34811538 tetramer-sort yes amplicon-seq central memory T cells T1D T1D_4 chip0423_335782 PBMC +8736 CASSQLGGVYNEQFF TRBV7-9*01 TRBJ2-1*01 HLA-B*08:01 B2M MHCI RAKFKQLL BZLF1 EBV PMID:34811538 tetramer-sort yes amplicon-seq effector memory T cells T1D T1D_5 chip0423_107696 PBMC +8737 CAVTGGGNKLTF TRAV12-2*01 TRAJ10*01 CASSLGADTQYF TRBV27*01 TRBJ2-3*01 HLA-A*01:01 B2M MHCI VTDAAHLLI ZNT8 HomoSapiens PMID:34811538 tetramer-sort yes amplicon-seq natural killer-like T cells T1D T1D_6 chip0423_472223 PBMC +8739 CASSIVGETQYF TRBV19*01 TRBJ2-5*01 HLA-A*02:01 B2M MHCI VMNILLQYV GAD65 HomoSapiens PMID:34811538 tetramer-sort yes amplicon-seq Naive T cells T1D T1D_6 chip0423_520689 PBMC +8740 CASSLTVLAGPNTEACF TRBV7-3*01 TRBJ1-1*01 HLA-B*08:01 B2M MHCI RAKFKQLL BZLF1 EBV PMID:34811538 tetramer-sort yes amplicon-seq effector T cells T1D T1D_4 chip0423_81336 PBMC +8741 CASSAHRDGYTF TRBV7-8*01 TRBJ1-2*01 HLA-B*08:01 B2M MHCI RAKFKQLL BZLF1 EBV PMID:34811538 tetramer-sort yes amplicon-seq effector memory T cells T1D T1D_5 chip0423_245295 PBMC +8743 CAALETSYDKVIF TRAV13-1*01 TRAJ50*01 CASQVHNGGRKRSTGELFF TRBV11-3*01 TRBJ2-2*01 HLA-B*08:01 B2M MHCI RAKFKQLL BZLF1 EBV PMID:34811538 tetramer-sort yes amplicon-seq effector memory T cells T1D T1D_5 chip0423_673292 PBMC +8744 RSAGRDGTNEKLFF TRBV29-1*01 TRBJ1-4*01 HLA-A*02:01 B2M MHCI GLCTLVAML BLMF1 EBV PMID:34811538 tetramer-sort yes amplicon-seq effector memory T cells T1D T1D_6 chip0423_528714 PBMC +8745 CAMSGDSGSARQLTF TRAV12-3*01 TRAJ22*01 CATSDLQLGKRYNEQFF TRBV24-1*01 TRBJ2-1*01 HLA-A*01:01 B2M MHCI GSHLVEALY INS HomoSapiens PMID:34811538 tetramer-sort yes amplicon-seq central memory T cells healthy healthy_3 chip0423_578721 PBMC +8746 CAGGGSGYALNF TRAV12-2*01 TRAJ41*01 CASSPGGTEKLFF TRBV7-9*01 TRBJ1-4*01 HLA-A*02:01 B2M MHCI LLAGIGTVPI PGT HomoSapiens PMID:34811538 tetramer-sort yes amplicon-seq Naive T cells T1D T1D_4 chip0423_514463 PBMC +8747 CARRLAPHGYTF TRBV5-4*01 TRBJ1-2*01 HLA-A*01:01 B2M MHCI CTELKLSDY NP InfluenzaA PMID:34811538 tetramer-sort yes amplicon-seq effector T cells healthy healthy_3 chip0423_343954 PBMC +8748 CAVNAHGGADGLTF TRAV12-2*01 TRAJ45*01 CASSYSGPNTEAFF TRBV6-2*01,TRBV6-3*01 TRBJ1-1*01 HLA-A*02:01 B2M MHCI ALAGIGILTV MART1 HomoSapiens PMID:34811538 tetramer-sort yes amplicon-seq Naive T cells T1D T1D_6 chip0423_324033 PBMC +8749 CAVRDIWGGTSPYIF TRAV3*01 TRAJ40*01 CSALDTVLNEKLFF TRBV20-1*01 TRBJ1-4*01 HLA-A*02:01 B2M MHCI YVLDHLIVV BRLF1 EBV PMID:34811538 tetramer-sort yes amplicon-seq effector memory T cells healthy healthy_4 chip0423_105823 PBMC +8750 CSAGRDGTNEKLFF TRBV29-1*01 TRBJ1-4*01 HLA-A*02:01 B2M MHCI GLCTLVAML BLMF1 EBV PMID:34811538 tetramer-sort yes amplicon-seq effector T cells T1D T1D_6 chip0423_644905 PBMC +8751 CALSEGAAGGFKTLF TRAV14/DV4*01 TRAJ9*01 CASSLTGTREAFF TRBV7-9*01 TRBJ1-1*01 HLA-B*08:01 B2M MHCI RAKFKQLL BZLF1 EBV PMID:34811538 tetramer-sort yes amplicon-seq effector memory T cells T1D T1D_5 chip0423_549073 PBMC +8752 CALSEGTSGTYKYIF TRAV19*01 TRAJ40*01 CASALGSGSLGYTF TRBV7-9*01 TRBJ1-2*01 HLA-A*01:01 B2M MHCI ALDIEIATY GFAP HomoSapiens PMID:34811538 tetramer-sort yes amplicon-seq Naive T cells T1D T1D_5 chip0423_279099 PBMC +8753 CASSIFSGSYNEQFF TRBV19*01 TRBJ2-1*01 HLA-A*02:01 B2M MHCI GILGFVFTL M1 InfluenzaA PMID:34811538 tetramer-sort yes amplicon-seq transitional T cells between effector and memory populations T1D T1D_6 chip0423_627341 PBMC +8754 CASSSGQAYEQYF TRBV7-8*01 TRBJ2-7*01 HLA-B*08:01 B2M MHCI FLRGRAYGL EBNA3A EBV PMID:34811538 tetramer-sort yes amplicon-seq effector memory T cells healthy healthy_4 chip0423_512075 PBMC +8755 CASSLAVGEGPQHF TRBV7-9*01 TRBJ1-5*01 HLA-B*08:01 B2M MHCI RAKFKQLL BZLF1 EBV PMID:34811538 tetramer-sort yes amplicon-seq effector memory T cells T1D T1D_4 chip0423_729305 PBMC +8757 CILPLAGGTGYGKLTF TRAV26-2*01 TRAJ52*01 CASSLGQAYEQYF TRBV7-8*01 TRBJ2-7*01 HLA-B*08:01 B2M MHCI FLRGRAYGL EBNA3A EBV PMID:34811538 tetramer-sort yes amplicon-seq effector memory T cells T1D T1D_6 chip0423_133062 PBMC +8758 CASSSRQNTEAFF TRBV5-1*01 TRBJ1-1*01 HLA-A*02:01 B2M MHCI LLAGIGTVPI PGT HomoSapiens PMID:34811538 tetramer-sort yes amplicon-seq Naive T cells T1D T1D_4 chip0423_738637 PBMC +8759 CASSLSSGGRGEQYF TRBV4-1*01 TRBJ2-7*01 HLA-B*08:01 B2M MHCI RAKFKQLL BZLF1 EBV PMID:34811538 tetramer-sort yes amplicon-seq effector memory T cells T1D T1D_5 chip0423_657430 PBMC +8761 CAAPSGYSTLTF TRAV8-1*01 TRAJ11*01 CASSFLRGSNQPQHF TRBV28*01 TRBJ1-5*01 HLA-A*02:01 B2M MHCI YVLDHLIVV BRLF1 EBV PMID:34811538 tetramer-sort yes amplicon-seq effector memory T cells T1D T1D_4 chip0423_358200 PBMC +8763 CASSLEPHGYTF TRBV5-4*01 TRBJ1-2*01 HLA-A*01:01 B2M MHCI CTELKLSDY NP InfluenzaA PMID:34811538 tetramer-sort yes amplicon-seq transitional T cells between effector and memory populations healthy healthy_3 chip0423_334136 PBMC +8764 CASSSGQAYEQYF TRBV7-8*01 TRBJ2-7*01 HLA-B*08:01 B2M MHCI FLRGRAYGL EBNA3A EBV PMID:34811538 tetramer-sort yes amplicon-seq effector memory T cells healthy healthy_4 chip0423_41304 PBMC +8765 CASQLAGGTGELFF TRBV24-1*01 TRBJ2-2*01 HLA-B*08:01 B2M MHCI RAKFKQLL BZLF1 EBV PMID:34811538 tetramer-sort yes amplicon-seq effector memory T cells T1D T1D_5 chip0423_715852 PBMC +8766 CAGQEIYGNDLVF TRAV35*01 TRAJ47*01 CSVEDPRRNYEQYF TRBV29-1*01 TRBJ2-7*01 HLA-B*08:01 B2M MHCI YAKWKLCSA ZNT8 HomoSapiens PMID:34811538 tetramer-sort yes amplicon-seq Naive T cells T1D T1D_5 chip0423_431063 PBMC +8767 CAVQAPIGF TRAV20*01 TRAJ37*01 HLA-A*02:01 B2M MHCI ALTAVAEEV PTPRN HomoSapiens PMID:34811538 tetramer-sort yes amplicon-seq Naive T cells T1D T1D_4 chip0423_357129 PBMC +8768 CVAIASGGSYIPTF TRAV12-1*01 TRAJ6*01 CASSQDSTPLHF TRBV4-2*01 TRBJ1-6*01 HLA-A*02:01 B2M MHCI YLQQNWWTL LMP1 EBV PMID:34811538 tetramer-sort yes amplicon-seq central memory T cells healthy healthy_3 chip0423_22739 PBMC +8769 CAVIPSNDMRF TRAV8-6*01 TRAJ43*01 CACSSGRNSGYTF TRBV30*01 TRBJ1-2*01 HLA-A*01:01 B2M MHCI CTELKLSDY NP InfluenzaA PMID:34811538 tetramer-sort yes amplicon-seq Naive T cells T1D T1D_4 chip0423_817773 PBMC +8770 CALTTYGQNFVF TRAV38-1*01 TRAJ26*01 CSASRDSYEQYF TRBV20-1*01 TRBJ2-7*01 HLA-A*02:01 B2M MHCI YLLEMLWRL LMP1 EBV PMID:34811538 tetramer-sort yes amplicon-seq central memory T cells T1D T1D_4 chip0423_711063 PBMC +8771 CILPLAGGTSYGKLTF TRAV26-2*01 TRAJ52*01 CASSLGQAYEQYF TRBV7-8*01 TRBJ2-7*01 HLA-B*08:01 B2M MHCI FLRGRAYGL EBNA3A EBV PMID:34811538 tetramer-sort yes amplicon-seq effector T cells T1D T1D_6 chip0423_304705 PBMC +8772 CAIPPGTGMFNEQFF TRBV2*01 TRBJ2-1*01 HLA-B*08:01 B2M MHCI EAKQKGFVPF GAD2 HomoSapiens PMID:34811538 tetramer-sort yes amplicon-seq Naive T cells T1D T1D_5 chip0423_30137 PBMC +8773 CILPLAGGTSYGKLTF TRAV26-2*01 TRAJ52*01 CASSLGQAYEQYF TRBV7-8*01 TRBJ2-7*01 HLA-B*08:01 B2M MHCI FLRGRAYGL EBNA3A EBV PMID:34811538 tetramer-sort yes amplicon-seq effector memory T cells T1D T1D_6 chip0423_776405 PBMC +8775 CAMSISNFGNEKLTF TRAV12-3*01 TRAJ48*01 HLA-A*02:01 B2M MHCI LLAGIGTVPI PGT HomoSapiens PMID:34811538 tetramer-sort yes amplicon-seq Naive T cells T1D T1D_4 chip0423_580151 PBMC +8776 CSAGRDGTNEKLFF TRBV29-1*01 TRBJ1-4*01 HLA-A*02:01 B2M MHCI GLCTLVAML BLMF1 EBV PMID:34811538 tetramer-sort yes amplicon-seq effector memory T cells T1D T1D_6 chip0423_459504 PBMC +8777 CILPLAGGTRYGKLTF TRAV26-2*01 TRAJ52*01 CASSLGQAYEQYF TRBV7-8*01 TRBJ2-7*01 HLA-B*08:01 B2M MHCI FLRGRAYGL EBNA3A EBV PMID:34811538 tetramer-sort yes amplicon-seq effector T cells T1D T1D_6 chip0423_146839 PBMC +8779 CALSGSSASKIIF TRAV14/DV4*01 TRAJ3*01 HLA-B*08:01 B2M MHCI RAKFKQLL BZLF1 EBV PMID:34811538 tetramer-sort yes amplicon-seq effector T cells T1D T1D_4 chip0423_776175 PBMC +8780 CAMREGEGGGFKTIF TRAV14/DV4*01 TRAJ9*01 CASSSGLAGGSHTGELFF TRBV11-1*01 TRBJ2-2*01 HLA-B*08:01 B2M MHCI RAKFKQLL BZLF1 EBV PMID:34811538 tetramer-sort yes amplicon-seq effector memory T cells T1D T1D_5 chip0423_698719 PBMC +8781 CAVNSGHTPLVF TRAV1-2*01 TRAJ29*01 CASSQVNNPGDGYTF TRBV14*01 TRBJ1-2*01 HLA-B*08:01 B2M MHCI QAKWRLQTL EBNA3A EBV PMID:34811538 tetramer-sort yes amplicon-seq effector memory T cells T1D T1D_4 chip0423_260130 PBMC +8782 CASGSLGSQNTEAFF TRAV38-1*01,TRAV36/DV7*01 TRAJ40*01 CASSSLGTQNTEAFF TRBV7-9*01 TRBJ1-1*01 HLA-B*08:01 B2M MHCI RAKFKQLL BZLF1 EBV PMID:34811538 tetramer-sort yes amplicon-seq effector memory T cells T1D T1D_5 chip0423_145123 PBMC +8783 CAVREYGNKLVF TRAV1-1*01 TRAJ47*01 CASSLAGREGTQYF TRBV11-3*01 TRBJ2-3*01 HLA-B*08:01 B2M MHCI ELRSRYWAI NP InfluenzaA PMID:34811538 tetramer-sort yes amplicon-seq transitional T cells between effector and memory populations T1D T1D_6 chip0423_791046 PBMC +8784 CAASRLGga?GGAAALPF TRAV23/DV6*01 TRAJ45*01 HLA-B*08:01 B2M MHCI FLRGRAYGL EBNA3A EBV PMID:34811538 tetramer-sort yes amplicon-seq effector memory T cells T1D T1D_6 chip0423_734579 PBMC +8785 CASSGPKLFANTGELFF TRBV11-2*01 TRBJ2-2*01 HLA-B*08:01 B2M MHCI RAKFKQLL BZLF1 EBV PMID:34811538 tetramer-sort yes amplicon-seq effector memory T cells T1D T1D_5 chip0423_579001 PBMC +8786 CAVNSENTPLVF TRAV1-2*01 TRAJ29*01 HLA-B*08:01 B2M MHCI QAKWRLQTL EBNA3A EBV PMID:34811538 tetramer-sort yes amplicon-seq effector memory T cells T1D T1D_4 chip0423_108860 PBMC +8787 CASSLLGGAGSPLHF TRBV12-3*01,TRBV12-4*01 TRBJ1-6*01 HLA-B*08:01 B2M MHCI RAKFKQLL BZLF1 EBV PMID:34811538 tetramer-sort yes amplicon-seq effector T cells T1D T1D_5 chip0423_842626 PBMC +8788 CAMSHMNRDDKIIF TRAV12-3*01 TRAJ30*01 CASSSTGGDYGYTF TRBV11-1*01 TRBJ1-2*01 HLA-A*02:01 B2M MHCI LLAGIGTVPI PGT HomoSapiens PMID:34811538 tetramer-sort yes amplicon-seq Naive T cells healthy healthy_3 chip0423_485404 PBMC +8789 CAMRAIEGANNLFF TRAV14/DV4*01 TRAJ36*01 HLA-B*08:01 B2M MHCI RAKFKQLL BZLF1 EBV PMID:34811538 tetramer-sort yes amplicon-seq effector memory T cells T1D T1D_5 chip0423_815568 PBMC +8790 CVAPETSYDKVIY TRAV13-1*01 TRAJ50*01 HLA-A*01:01 B2M MHCI STNVGSNTY IAPP HomoSapiens PMID:34811538 tetramer-sort yes amplicon-seq Naive T cells T1D T1D_6 chip0423_568062 PBMC +8791 CILPLAGGTSYGKLTF TRAV26-2*01 TRAJ52*01 CASSLGQAYEQYF TRBV7-8*01 TRBJ2-7*01 HLA-B*08:01 B2M MHCI FLRGRAYGL EBNA3A EBV PMID:34811538 tetramer-sort yes amplicon-seq effector memory T cells T1D T1D_6 chip0423_379883 PBMC +8792 CSADSYRDIDNYGYTF TRBV20-1*01 TRBJ1-2*01 HLA-A*01:01 B2M MHCI CTELKLSDY NP InfluenzaA PMID:34811538 tetramer-sort yes amplicon-seq transitional T cells between effector and memory populations healthy healthy_3 chip0423_222889 PBMC +8793 CILPLAGGTSYGKLTF TRAV26-2*01 TRAJ52*01 CASSLGQAYEQYF TRBV7-8*01 TRBJ2-7*01 HLA-B*08:01 B2M MHCI FLRGRAYGL EBNA3A EBV PMID:34811538 tetramer-sort yes amplicon-seq effector memory T cells T1D T1D_6 chip0423_118328 PBMC +8795 CASSPPGSNEKLFF TRAV9-2*01 TRAJ5*01 CASSPPGSNEKLFF TRBV12-3*01,TRBV12-4*01 TRBJ1-4*01 HLA-B*08:01 B2M MHCI RAKFKQLL BZLF1 EBV PMID:34811538 tetramer-sort yes amplicon-seq effector memory T cells T1D T1D_5 chip0423_723545 PBMC +8796 CGQQFgg??ggEPQYF TRBV27*01 TRBJ2-5*01 HLA-A*02:01 B2M MHCI ALAGIGILTV MART1 HomoSapiens PMID:34811538 tetramer-sort yes amplicon-seq transitional T cells between effector and memory populations healthy healthy_3 chip0423_562934 PBMC +8797 CPQSTGTLIF TRAV5*01 TRAJ37*01 CSAGRDGTNEKLFF TRBV29-1*01 TRBJ1-4*01 HLA-A*02:01 B2M MHCI GLCTLVAML BLMF1 EBV PMID:34811538 tetramer-sort yes amplicon-seq effector memory T cells T1D T1D_6 chip0423_530485 PBMC +8798 CACQTDSRGELQF TRAV12-2*01 TRAJ24*01 CASSLPLSGFYEQFF TRBV12-3*01,TRBV12-4*01 TRBJ2-1*01 HLA-A*02:01 B2M MHCI LLAGIGTVPI PGT HomoSapiens PMID:34811538 tetramer-sort yes amplicon-seq Naive T cells T1D T1D_6 chip0423_527641 PBMC +8799 CASSPLGAGEKLFF TRAV36/DV7*01 TRAJ5*01 CASSPLGEGEKLFF TRBV7-9*01 TRBJ1-4*01 HLA-B*08:01 B2M MHCI RAKFKQLL BZLF1 EBV PMID:34811538 tetramer-sort yes amplicon-seq effector memory T cells T1D T1D_5 chip0423_659824 PBMC +8801 CASQLAGGTGELFF TRBV24-1*01 TRBJ2-2*01 HLA-B*08:01 B2M MHCI RAKFKQLL BZLF1 EBV PMID:34811538 tetramer-sort yes amplicon-seq effector memory T cells T1D T1D_5 chip0423_796606 PBMC +8802 CALSEDRIVNTGNQFYF TRAV19*01 TRAJ49*01 HLA-A*01:01 B2M MHCI VTDAAHLLI ZNT8 HomoSapiens PMID:34811538 tetramer-sort yes amplicon-seq Naive T cells T1D T1D_5 chip0423_733078 PBMC +8803 CPPVPASAGSQGNLIF TRAV17*01 TRAJ42*01 CASSVGFGPNTEAFF TRBV9*01 TRBJ1-1*01 HLA-A*02:01 B2M MHCI LLSILCIWV ZNT8 HomoSapiens PMID:34811538 tetramer-sort yes amplicon-seq Naive T cells T1D T1D_6 chip0423_558168 PBMC +8804 CASSQVNNPGDGYTF TRBV14*01 TRBJ1-2*01 HLA-B*08:01 B2M MHCI QAKWRLQTL EBNA3A EBV PMID:34811538 tetramer-sort yes amplicon-seq effector memory T cells T1D T1D_4 chip0423_526631 PBMC +8805 CALSGIYDKIIF TRAV19*01 TRAJ30*01 CASSLRTGNTEAFF TRBV27*01 TRBJ1-1*01 HLA-A*01:01 B2M MHCI HSNLNDATY NP InfluenzaA PMID:34811538 tetramer-sort yes amplicon-seq Naive T cells T1D T1D_5 chip0423_334189 PBMC +8806 CAVMWGYQKVTF TRAV12-2*01 TRAJ13*01 CASSPSGNYEQYF TRBV27*01 TRBJ2-7*01 HLA-A*02:01 B2M MHCI VVTGVLVYL ZNT8 HomoSapiens PMID:34811538 tetramer-sort yes amplicon-seq Naive T cells healthy healthy_3 chip0423_71396 PBMC +8807 CAMSDPRKTSYDKVIF TRAV12-3*01 TRAJ50*01 CASSAQGEGVQNIQYF TRBV25-1*01 TRBJ2-4*01 HLA-A*01:01 B2M MHCI LTSLTILQLY G6PC2 HomoSapiens PMID:34811538 tetramer-sort yes amplicon-seq effector T cells tet_neg chip0423_6812 PBMC +8808 CAMREGESGGFKTIF TRAV14/DV4*01 TRAJ9*01 CASSSGLAGDSHTGELFF TRBV11-1*01 TRBJ2-2*01 HLA-B*08:01 B2M MHCI RAKFKQLL BZLF1 EBV PMID:34811538 tetramer-sort yes amplicon-seq effector T cells T1D T1D_5 chip0423_4145 PBMC +8809 CALGDSGAGSSPLPF TRAV20*01 TRAJ28*01 CASSQEVGQETQYF TRBV4-2*01 TRBJ2-5*01 HLA-A*02:01 B2M MHCI VAANIVLTV ZNT8 HomoSapiens PMID:34811538 tetramer-sort yes amplicon-seq Naive T cells T1D T1D_6 chip0423_503267 PBMC +8810 CASSTTRAGTWPLHF TRBV7-9*01 TRBJ1-6*01 HLA-B*08:01 B2M MHCI RAKFKQLL BZLF1 EBV PMID:34811538 tetramer-sort yes amplicon-seq effector memory T cells healthy healthy_4 chip0423_273479 PBMC +8811 CALSEAVNYGGSQGNLIF TRAV19*01 TRAJ42*01 HLA-A*01:01 B2M MHCI VTDAAHLLI ZNT8 HomoSapiens PMID:34811538 tetramer-sort yes amplicon-seq Naive T cells T1D T1D_4 chip0423_374263 PBMC +8812 CSGQWDYPYEQYF TRBV29-1*01 TRBJ2-7*01 HLA-A*02:01 B2M MHCI FMYSDFHFI PA InfluenzaA PMID:34811538 tetramer-sort yes amplicon-seq Naive T cells T1D T1D_6 chip0423_153494 PBMC +8813 CIVREGGGADGLPF TRAV26-1*01 TRAJ45*01 CASSLAVGGGPQHF TRBV7-9*01 TRBJ1-5*01 HLA-B*08:01 B2M MHCI RAKFKQLL BZLF1 EBV PMID:34811538 tetramer-sort yes amplicon-seq effector T cells T1D T1D_4 chip0423_94707 PBMC +8814 CIVREGGGADGLPF TRAV26-1*01 TRAJ45*01 CASSLAVGEGPQHF TRBV7-9*01 TRBJ1-5*01 HLA-B*08:01 B2M MHCI RAKFKQLL BZLF1 EBV PMID:34811538 tetramer-sort yes amplicon-seq effector memory T cells T1D T1D_4 chip0423_837693 PBMC +8815 CAVIQTGANNLFF TRAV2*01 TRAJ36*01 CASSVSGAPYEQYF TRBV9*01 TRBJ2-7*01 HLA-B*08:01 B2M MHCI FLRGRAYGL EBNA3A EBV PMID:34811538 tetramer-sort yes amplicon-seq effector T cells T1D T1D_6 chip0423_669568 PBMC +8816 CAALGFGHVLRCGSCTQL TRAV17*01 TRAJ41*01 HLA-A*01:01 B2M MHCI LVSDGGPNLY PB1 InfluenzaA PMID:34811538 tetramer-sort yes amplicon-seq Naive T cells T1D T1D_5 chip0423_205829 PBMC +8817 CIVREGGGADGLTF TRAV26-1*01 TRAJ45*01 CASSLAVGEGPQHF TRBV7-9*01 TRBJ1-5*01 HLA-B*08:01 B2M MHCI RAKFKQLL BZLF1 EBV PMID:34811538 tetramer-sort yes amplicon-seq effector memory T cells T1D T1D_4 chip0423_521717 PBMC +8818 CASSILPGAEAFF TRAV14/DV4*01 TRAJ40*01 CASSILPGAEAFF TRBV7-3*01 TRBJ1-1*01 HLA-B*08:01 B2M MHCI EIYKRWII Gag HIV-1 PMID:34811538 tetramer-sort yes amplicon-seq Naive T cells T1D T1D_6 chip0423_75182 PBMC +8819 CASNPTGTVYEQYF TRBV10-2*01 TRBJ2-7*01 HLA-A*02:01 B2M MHCI VLFGLGFAI IGRP HomoSapiens PMID:34811538 tetramer-sort yes amplicon-seq Naive T cells T1D T1D_4 chip0423_247965 PBMC +8820 CAAFMDSNYQLIW TRAV12-3*01 TRAJ33*01 CASSEGYAYEQYF TRBV2*01 TRBJ2-7*01 HLA-A*01:01 B2M MHCI LVSDGGPNLY PB1 InfluenzaA PMID:34811538 tetramer-sort yes amplicon-seq Naive T cells T1D T1D_5 chip0423_489483 PBMC +8821 CAMREKEGANNLFF TRAV14/DV4*01 TRAJ36*01 CSVYAGYGYTF TRBV29-1*01 TRBJ1-2*01 HLA-B*08:01 B2M MHCI RAKFKQLL BZLF1 EBV PMID:34811538 tetramer-sort yes amplicon-seq effector T cells T1D T1D_5 chip0423_386695 PBMC +8822 CAVGDPKag??ggRRGDLIV TRAV8-4*01 TRAJ42*01 CASSQLLRGQSTDTQYF TRBV3-1*01 TRBJ2-3*01 HLA-A*02:01 B2M MHCI LLAGIGTVPI PGT HomoSapiens PMID:34811538 tetramer-sort yes amplicon-seq Naive T cells healthy healthy_3 chip0423_290510 PBMC +8823 CAATETSYDKVIF TRAV13-1*01 TRAJ50*01 HLA-B*08:01 B2M MHCI RAKFKQLL BZLF1 EBV PMID:34811538 tetramer-sort yes amplicon-seq effector memory T cells T1D T1D_5 chip0423_205717 PBMC +8824 CAVSDGEGAQQLVF TRAV8-6*01 TRAJ54*01 CASSLTVLAGPNTEAFF TRBV7-3*01 TRBJ1-1*01 HLA-B*08:01 B2M MHCI RAKFKQLL BZLF1 EBV PMID:34811538 tetramer-sort yes amplicon-seq effector memory T cells T1D T1D_4 chip0423_617098 PBMC +8825 CALFPNVFNKFYF TRAV16*01 TRAJ21*01 CASSPSGVRGTGELFF TRBV6-2*01,TRBV6-3*01 TRBJ2-2*01 HLA-B*08:01 B2M MHCI WPTVRERM Nef HIV-1 PMID:34811538 tetramer-sort yes amplicon-seq Naive T cells T1D T1D_5 chip0423_567299 PBMC +8826 CASCQTEESEGYTF TRBV12-3*01,TRBV12-4*01 TRBJ1-2*01 HLA-B*08:01 B2M MHCI RAKFKQLL BZLF1 EBV PMID:34811538 tetramer-sort yes amplicon-seq effector T cells T1D T1D_5 chip0423_504907 PBMC +8827 CASSYSSTGEYF TRBV6-2*01,TRBV6-3*01 TRBJ2-7*01 HLA-A*02:01 B2M MHCI YLLEMLWRL LMP1 EBV PMID:34811538 tetramer-sort yes amplicon-seq central memory T cells T1D T1D_4 chip0423_247928 PBMC +8828 CAMSPTGGSYIPTF TRAV12-3*01 TRAJ6*01 CSARDYQDRGSGELFF TRBV20-1*01 TRBJ2-2*01 HLA-A*01:01 B2M MHCI VTDAAHLLI ZNT8 HomoSapiens PMID:34811538 tetramer-sort yes amplicon-seq Naive T cells T1D T1D_4 chip0423_214157 PBMC +8829 CAEVSHGNNRLAF TRAV13-1*01 TRAJ7*01 CASSPPFTTNEKLFF TRBV28*01 TRBJ1-4*01 HLA-A*02:01 B2M MHCI LLAGIGTVPI PGT HomoSapiens PMID:34811538 tetramer-sort yes amplicon-seq Naive T cells T1D T1D_4 chip0423_553666 PBMC +8830 CASSQAGGTEAFF TRAV36/DV7*01 TRAJ40*01 CASSQAGGTEAFF TRBV4-3*01 TRBJ1-1*01 HLA-A*02:01 B2M MHCI CINGVCWTV NS3 HCV PMID:34811538 tetramer-sort yes amplicon-seq central memory T cells T1D T1D_4 chip0423_300722 PBMC +8831 *PVREYFH??gGGGNKLTF TRAV8-3*01,TRAV8-4*01 TRAJ10*01 CASSLPSEIIQMNTEAFF TRBV6-4*01 TRBJ1-1*01 HLA-A*02:01 B2M MHCI SLAAGVKLL PTPRN HomoSapiens PMID:34811538 tetramer-sort yes amplicon-seq Naive T cells T1D T1D_6 chip0423_570282 PBMC +8832 CAAAETSYDKVIF TRAV13-1*01 TRAJ50*01 HLA-B*08:01 B2M MHCI RAKFKQLL BZLF1 EBV PMID:34811538 tetramer-sort yes amplicon-seq effector T cells T1D T1D_5 chip0423_393465 PBMC +8833 RAPPLPEg?cRKGHLLF TRAV35*01 TRAJ42*01 CASSLLGEEDQPQHF TRBV7-9*01 TRBJ1-5*01 HLA-B*08:01 B2M MHCI RAKFKQLL BZLF1 EBV PMID:34811538 tetramer-sort yes amplicon-seq effector T cells T1D T1D_5 chip0423_439408 PBMC +8834 CASSFVAKINSPLHF TRAV20*01,TRAV36/DV7*01 TRAJ11*01 CASSFVDKINSPLHF TRBV7-9*01 TRBJ1-6*01 HLA-B*08:01 B2M MHCI RAKFKQLL BZLF1 EBV PMID:34811538 tetramer-sort yes amplicon-seq effector memory T cells T1D T1D_5 chip0423_823308 PBMC +8835 CAALETSYDKVIF TRAV13-1*01 TRAJ50*01 CASSPDGSTGELFF TRBV12-3*01,TRBV12-4*01 TRBJ2-2*01 HLA-B*08:01 B2M MHCI RAKFKQLL BZLF1 EBV PMID:34811538 tetramer-sort yes amplicon-seq effector memory T cells T1D T1D_5 chip0423_600764 PBMC +8836 CSADSYRDIDNYGYTF TRBV20-1*01 TRBJ1-2*01 HLA-A*01:01 B2M MHCI CTELKLSDY NP InfluenzaA PMID:34811538 tetramer-sort yes amplicon-seq effector memory T cells healthy healthy_3 chip0423_600297 PBMC +8837 CASSLAQGGEQFF TRBV7-9*01 TRBJ2-1*01 HLA-A*02:01 B2M MHCI ALAGIGILTV MART1 HomoSapiens PMID:34811538 tetramer-sort yes amplicon-seq transitional T cells between effector and memory populations T1D T1D_4 chip0423_539591 PBMC +8838 CASSLAVGEGPQHF TRBV7-9*01 TRBJ1-5*01 HLA-B*08:01 B2M MHCI RAKFKQLL BZLF1 EBV PMID:34811538 tetramer-sort yes amplicon-seq effector T cells T1D T1D_4 chip0423_656836 PBMC +8839 CAVTYGGSQGNLIF TRAV25*01 TRAJ42*01 CASSMRSTGELFF TRBV19*01 TRBJ2-2*01 HLA-A*02:01 B2M MHCI GILGFVFTL M1 InfluenzaA PMID:34811538 tetramer-sort yes amplicon-seq transitional T cells between effector and memory populations T1D T1D_4 chip0423_222267 PBMC +8840 CVVNGENARLMF TRAV12-1*01 TRAJ31*01 CASSEMWGAPLHF TRBV2*01 TRBJ1-6*01 HLA-A*01:01 B2M MHCI CTELKLSDY NP InfluenzaA PMID:34811538 tetramer-sort yes amplicon-seq transitional T cells between effector and memory populations healthy healthy_3 chip0423_218901 PBMC +8841 CAVNEGGGADGLTF TRAV12-2*01 TRAJ45*01 HLA-A*02:01 B2M MHCI LLAGIGTVPI PGT HomoSapiens PMID:34811538 tetramer-sort yes amplicon-seq Naive T cells healthy healthy_3 chip0423_191954 PBMC +8842 CALNSGGYQKVTF TRAV12-2*01 TRAJ13*01 CASSFGQGSEQYF TRBV6-5*01 TRBJ2-7*01 HLA-A*02:01 B2M MHCI LLAGIGTVPI PGT HomoSapiens PMID:34811538 tetramer-sort yes amplicon-seq Naive T cells healthy healthy_3 chip0423_882153 PBMC +8843 CAASGDYKLSF TRAV13-1*01 TRAJ20*01 CASSPKTGAGLAGDEQFF TRBV11-1*01 TRBJ2-1*01 HLA-A*01:01 B2M MHCI CTELKLSDY NP InfluenzaA PMID:34811538 tetramer-sort yes amplicon-seq transitional T cells between effector and memory populations healthy healthy_3 chip0423_689435 PBMC +8844 CAASETSYDKVIF TRAV13-1*01 TRAJ50*01 CASSSLGERGSEAFF TRBV7-9*01 TRBJ1-1*01 HLA-B*08:01 B2M MHCI RAKFKQLL BZLF1 EBV PMID:34811538 tetramer-sort yes amplicon-seq effector memory T cells T1D T1D_5 chip0423_568370 PBMC +8845 CAMSISNFGNEKLTF TRAV12-3*01 TRAJ48*01 HLA-A*02:01 B2M MHCI LLAGIGTVPI PGT HomoSapiens PMID:34811538 tetramer-sort yes amplicon-seq Naive T cells T1D T1D_4 chip0423_308463 PBMC +8847 CASSLGQAYEQYF TRBV7-8*01 TRBJ2-7*01 HLA-B*08:01 B2M MHCI FLRGRAYGL EBNA3A EBV PMID:34811538 tetramer-sort yes amplicon-seq effector T cells T1D T1D_6 chip0423_78169 PBMC +8848 CALIFTQGGSEKLVF TRAV19*01 TRAJ57*01 CASSLGEGLRYTF TRBV7-9*01 TRBJ1-2*01 HLA-A*01:01 B2M MHCI HSNLNDATY NP InfluenzaA PMID:34811538 tetramer-sort yes amplicon-seq Naive T cells T1D T1D_4 chip0423_528018 PBMC +8849 YASSMNLGGSQPQHF TRBV19*01 TRBJ1-5*01 HLA-A*02:01 B2M MHCI YVLDHLIVV BRLF1 EBV PMID:34811538 tetramer-sort yes amplicon-seq effector memory T cells healthy healthy_4 chip0423_452118 PBMC +8850 CSVEGLIGVTEAFF TRBV29-1*01 TRBJ1-1*01 HLA-A*02:01 B2M MHCI LLSLFSLWL ZNT8 HomoSapiens PMID:34811538 tetramer-sort yes amplicon-seq Naive T cells T1D T1D_6 chip0423_189633 PBMC +8851 CASRGEYGNKLVF TRAV38-1*01 TRAJ47*01 CASSPMDREREAFF TRBV19*01 TRBJ1-1*01 HLA-A*01:01 B2M MHCI STNVGSNTY IAPP HomoSapiens PMID:34811538 tetramer-sort yes amplicon-seq central memory T cells T1D T1D_6 chip0423_670833 PBMC +8852 CASRTEMGGELFF TRBV19*01 TRBJ2-2*01 HLA-A*02:01 B2M MHCI KMYAFTLES ZNT8 HomoSapiens PMID:34811538 tetramer-sort yes amplicon-seq Naive T cells T1D T1D_6 chip0423_356161 PBMC +8853 CASSSLSGGAGNEQFF TRBV7-9*01 TRBJ2-1*01 HLA-B*08:01 B2M MHCI RAKFKQLL BZLF1 EBV PMID:34811538 tetramer-sort yes amplicon-seq effector T cells T1D T1D_5 chip0423_768593 PBMC +8854 CAGSNGGSQGNLVF TRAV25*01 TRAJ42*01 CASSMRSTGELFF TRBV19*01 TRBJ2-2*01 HLA-A*02:01 B2M MHCI GILGFVFTL M1 InfluenzaA PMID:34811538 tetramer-sort yes amplicon-seq transitional T cells between effector and memory populations T1D T1D_4 chip0423_292093 PBMC +8855 CAINSGNTPLVF TRAV1-2*01 TRAJ29*01 CARSPVVNPGDGYTF TRBV14*01 TRBJ1-2*01 HLA-B*08:01 B2M MHCI QAKWRLQTL EBNA3A EBV PMID:34811538 tetramer-sort yes amplicon-seq effector memory T cells T1D T1D_4 chip0423_182601 PBMC +8856 CASRNSGNTPLVF TRAV24*01 TRAJ29*01 CASSQDFLDGHSEAFF TRBV4-2*01 TRBJ1-1*01 HLA-A*02:01 B2M MHCI LLAGIGTVPI PGT HomoSapiens PMID:34811538 tetramer-sort yes amplicon-seq Naive T cells T1D T1D_4 chip0423_33811 PBMC +8859 CVVHYNTDKLIF TRAV12-1*01 TRAJ34*01 HLA-A*01:01 B2M MHCI CTELKLSDY NP InfluenzaA PMID:34811538 tetramer-sort yes amplicon-seq effector T cells healthy healthy_3 chip0423_870204 PBMC +8860 CASSQVNNPGDGYTF TRBV14*01 TRBJ1-2*01 HLA-B*08:01 B2M MHCI QAKWRLQTL EBNA3A EBV PMID:34811538 tetramer-sort yes amplicon-seq effector memory T cells T1D T1D_4 chip0423_257974 PBMC +8861 CALISGSDYKLTF TRAV29/DV5*01 TRAJ53*01 CASSTLQGTNTEAFF TRBV7-9*01 TRBJ1-1*01 HLA-A*01:01 B2M MHCI PTEKGANEY ZNT8 HomoSapiens PMID:34811538 tetramer-sort yes amplicon-seq Naive T cells T1D T1D_6 chip0423_50569 PBMC +8862 CAEMETSYDKVIF TRAV13-2*01 TRAJ50*01 CASSSLSGGAGNEQFF TRBV7-9*01 TRBJ2-1*01 HLA-B*08:01 B2M MHCI RAKFKQLL BZLF1 EBV PMID:34811538 tetramer-sort yes amplicon-seq effector memory T cells T1D T1D_5 chip0423_541613 PBMC +8863 CASSYQGGNYGYTF TRBV6-5*01 TRBJ1-2*01 HLA-A*02:01 B2M MHCI FLYALALLL LMP2 EBV PMID:34811538 tetramer-sort yes amplicon-seq transitional T cells between effector and memory populations T1D T1D_6 chip0423_157562 PBMC +8864 CAVRPLGGNTPLVF TRAV12-2*01 TRAJ29*01 CASGPDISYSYEQYF TRBV12-5*01 TRBJ2-7*01 HLA-B*08:01 B2M MHCI RAKFKQLL BZLF1 EBV PMID:34811538 tetramer-sort yes amplicon-seq effector memory T cells T1D T1D_5 chip0423_93228 PBMC +8865 CAVDTIDRGSTLGRLYF TRAV39*01 TRAJ18*01 CASSQEGQGAGELFF TRBV4-1*01 TRBJ2-2*01 HLA-A*02:01 B2M MHCI GILGFVFTL M1 InfluenzaA PMID:34811538 tetramer-sort yes amplicon-seq effector T cells healthy healthy_3 chip0423_840428 PBMC +8866 CASSLAVGEGPQHF TRBV7-9*01 TRBJ1-5*01 HLA-B*08:01 B2M MHCI RAKFKQLL BZLF1 EBV PMID:34811538 tetramer-sort yes amplicon-seq effector memory T cells T1D T1D_4 chip0423_839865 PBMC +8867 CAVPGGNQFSF TRAV3*01 TRAJ49*01 CASSVFATGGSGYTF TRBV19*01 TRBJ1-2*01 HLA-A*02:01 B2M MHCI GILGFVFTL M1 InfluenzaA PMID:34811538 tetramer-sort yes amplicon-seq transitional T cells between effector and memory populations T1D T1D_4 chip0423_687949 PBMC +8868 CAVRDISFQKLVF TRAV3*01 TRAJ8*01 CASSSTIGATEAFF TRBV19*01 TRBJ1-1*01 HLA-A*02:01 B2M MHCI GILGFVFTL M1 InfluenzaA PMID:34811538 tetramer-sort yes amplicon-seq transitional T cells between effector and memory populations T1D T1D_4 chip0423_845795 PBMC +8869 CASSFDLSSYNEQFF TRBV27*01 TRBJ2-1*01 HLA-A*02:01 B2M MHCI LLAGIGTVPI PGT HomoSapiens PMID:34811538 tetramer-sort yes amplicon-seq Naive T cells healthy healthy_3 chip0423_786961 PBMC +8870 CAITYSNFATAKFTF TRAV12-3*01 TRAJ48*01 CSARAKSGPSYNEQFF TRBV20-1*01 TRBJ2-1*01 HLA-A*02:01 B2M MHCI LLAGIGTVPI PGT HomoSapiens PMID:34811538 tetramer-sort yes amplicon-seq Naive T cells healthy healthy_4 chip0423_354165 PBMC +8871 CASSFTGQVNTEAFF TRAV9-1*01 TRAJ40*01 CASSFTGQVNTEAFF TRBV12-3*01,TRBV12-4*01 TRBJ1-1*01 HLA-B*08:01 B2M MHCI RAKFKQLL BZLF1 EBV PMID:34811538 tetramer-sort yes amplicon-seq effector memory T cells T1D T1D_5 chip0423_122630 PBMC +8872 GAFSAGQKLLF TRAV25*01 TRAJ16*01 CARRLLGSVDTEAFF TRBV7-9*01 TRBJ1-1*01 HLA-B*08:01 B2M MHCI RAKFKQLL BZLF1 EBV PMID:34811538 tetramer-sort yes amplicon-seq effector memory T cells T1D T1D_5 chip0423_31710 PBMC +8874 CASSYGAGSYEQYF TRBV6-5*01 TRBJ2-7*01 HLA-B*08:01 B2M MHCI HARIKLKV PTPRN HomoSapiens PMID:34811538 tetramer-sort yes amplicon-seq Naive T cells T1D T1D_6 chip0423_394297 PBMC +8875 CAMREGGDSGYALNF TRAV14/DV4*01 TRAJ41*01 CASSLGGGPTTDTQYF TRBV7-9*01 TRBJ2-3*01 HLA-A*01:01 B2M MHCI HSNLNDATY NP InfluenzaA PMID:34811538 tetramer-sort yes amplicon-seq Naive T cells T1D T1D_5 chip0423_114906 PBMC +8876 CASSQTFPNTGELFF TRBV3-1*01 TRBJ2-2*01 HLA-B*08:01 B2M MHCI RAKFKQLL BZLF1 EBV PMID:34811538 tetramer-sort yes amplicon-seq effector memory T cells healthy healthy_4 chip0423_271309 PBMC +8877 CASSLAVGEGPQHF TRBV7-9*01 TRBJ1-5*01 HLA-B*08:01 B2M MHCI RAKFKQLL BZLF1 EBV PMID:34811538 tetramer-sort yes amplicon-seq effector memory T cells T1D T1D_4 chip0423_261386 PBMC +8878 CIVREGGGADGLTF TRAV26-1*01 TRAJ45*01 CASSLAVGEGPQHF TRBV7-9*01 TRBJ1-5*01 HLA-B*08:01 B2M MHCI RAKFKQLL BZLF1 EBV PMID:34811538 tetramer-sort yes amplicon-seq effector memory T cells T1D T1D_4 chip0423_21743 PBMC +8879 CAMSPSNFGNEKLTF TRAV12-3*01 TRAJ48*01 CASSQTIEASEQYF TRBV3-1*01 TRBJ2-7*01 HLA-A*02:01 B2M MHCI LLAGIGTVPI PGT HomoSapiens PMID:34811538 tetramer-sort yes amplicon-seq Naive T cells T1D T1D_4 chip0423_415246 PBMC +8880 CAVTPTRNHMRF TRAV12-2*01 TRAJ43*01 CASSQATTAGELFF TRBV4-1*01 TRBJ2-2*01 HLA-A*02:01 B2M MHCI LLAGIGTVPI PGT HomoSapiens PMID:34811538 tetramer-sort yes amplicon-seq Naive T cells T1D T1D_6 chip0423_277066 PBMC +8881 CSAPPVPGNEKLFF TRBV20-1*01 TRBJ1-4*01 HLA-A*02:01 B2M MHCI TLLANVTAV VP6 RotavirusA PMID:34811538 tetramer-sort yes amplicon-seq transitional T cells between effector and memory populations T1D T1D_6 chip0423_813744 PBMC +8882 CAVRDGQ*LLF TRAV13-2*01 TRAJ16*01 CATKPDRDNQPQHF TRBV10-3*01 TRBJ1-5*01 HLA-A*01:01 B2M MHCI LVSDGGPNLY PB1 InfluenzaA PMID:34811538 tetramer-sort yes amplicon-seq natural killer-like T cells T1D T1D_5 chip0423_714147 PBMC +8883 CILPLAGGTSYGKLTF TRAV26-2*01 TRAJ52*01 CASSSGQAYEQYF TRBV7-8*01 TRBJ2-7*01 HLA-B*08:01 B2M MHCI FLRGRAYGL EBNA3A EBV PMID:34811538 tetramer-sort yes amplicon-seq effector memory T cells T1D T1D_4 chip0423_367311 PBMC +8884 SAVSAPGAGANDLFF TRAV14/DV4*01 TRAJ36*01 CASSQAPGQRTGELFF TRBV4-1*01 TRBJ2-2*01 HLA-B*08:01 B2M MHCI RAKFKQLL BZLF1 EBV PMID:34811538 tetramer-sort yes amplicon-seq effector memory T cells healthy healthy_4 chip0423_269815 PBMC +8885 CARSLGRSPNTAALF TRBV7-2*01 TRBJ1-1*01 HLA-A*02:01 B2M MHCI LLAGIGTVPI PGT HomoSapiens PMID:34811538 tetramer-sort yes amplicon-seq Naive T cells T1D T1D_4 chip0423_743250 PBMC +8887 CASSAGGGLDQPQHF TRBV6-4*01 TRBJ1-5*01 HLA-B*08:01 B2M MHCI HLKRNIVV GFAP HomoSapiens PMID:34811538 tetramer-sort yes amplicon-seq Naive T cells healthy healthy_4 chip0423_501311 PBMC +8888 CAGGETSYDKVIF TRAV13-1*01 TRAJ50*01 CASSSLGTGDTEAFF TRBV7-9*01 TRBJ1-1*01 HLA-B*08:01 B2M MHCI RAKFKQLL BZLF1 EBV PMID:34811538 tetramer-sort yes amplicon-seq effector memory T cells T1D T1D_5 chip0423_488548 PBMC +8889 CAVVFMNTGFQKLVF TRAV8-3*01 TRAJ8*01 CASSFGTAEQYF TRBV5-8*01 TRBJ2-7*01 HLA-A*02:01 B2M MHCI VVTGVLVYL ZNT8 HomoSapiens PMID:34811538 tetramer-sort yes amplicon-seq Naive T cells healthy healthy_3 chip0423_233056 PBMC +8890 CASSPGPNTEAFF TRAV36/DV7*01 TRAJ40*01 CASSPGPNTEAFF TRBV4-2*01 TRBJ1-1*01 HLA-B*08:01 B2M MHCI RAKFKQLL BZLF1 EBV PMID:34811538 tetramer-sort yes amplicon-seq effector T cells T1D T1D_4 chip0423_737139 PBMC +8891 CALIMEga?SQGNLIF TRAV36/DV7*01 TRAJ42*01 HLA-B*08:01 B2M MHCI RAKFKQLL BZLF1 EBV PMID:34811538 tetramer-sort yes amplicon-seq effector memory T cells T1D T1D_5 chip0423_489247 PBMC +8892 CATIIEWL??tSNTGKLIF TRAV2*01 TRAJ37*01 HLA-A*02:01 B2M MHCI CLGGLLTMV LMP2A EBV PMID:34811538 tetramer-sort yes amplicon-seq Naive T cells T1D T1D_6 chip0423_310465 PBMC +8893 CAALC*tg??caGNMFAF TRAV24*01 TRAJ39*01 CASSPSLLSGTGELFF TRBV7-9*01 TRBJ2-2*01 HLA-A*02:01 B2M MHCI LLAGIGTVPI PGT HomoSapiens PMID:34811538 tetramer-sort yes amplicon-seq central memory T cells healthy healthy_3 chip0423_873246 PBMC +8894 CASSLLGSQNTEAFF TRAV36/DV7*01 TRAJ40*01 CASSLLGSQNTEAFC TRBV7-9*01 TRBJ1-1*01 HLA-B*08:01 B2M MHCI RAKFKQLL BZLF1 EBV PMID:34811538 tetramer-sort yes amplicon-seq transitional T cells between effector and memory populations T1D T1D_5 chip0423_753007 PBMC +8895 CAVSDGEGAQKLVF TRAV8-6*01 TRAJ54*01 HLA-B*08:01 B2M MHCI RAKFKQLL BZLF1 EBV PMID:34811538 tetramer-sort yes amplicon-seq effector memory T cells T1D T1D_4 chip0423_392429 PBMC +8896 CVVNGENARLMF TRAV12-1*01 TRAJ31*01 HLA-A*01:01 B2M MHCI CTELKLSDY NP InfluenzaA PMID:34811538 tetramer-sort yes amplicon-seq transitional T cells between effector and memory populations healthy healthy_3 chip0423_516032 PBMC +8897 CIVREGGGADGLTF TRAV26-1*01 TRAJ45*01 CASSLAVGEGPQHF TRBV7-9*01 TRBJ1-5*01 HLA-B*08:01 B2M MHCI RAKFKQLL BZLF1 EBV PMID:34811538 tetramer-sort yes amplicon-seq effector memory T cells T1D T1D_4 chip0423_484055 PBMC +8898 CAASDQAAGNKLTF TRAV29/DV5*01 TRAJ17*01 CASSGLAGVHSYEQYF TRBV2*01 TRBJ2-7*01 HLA-A*01:01 B2M MHCI LVSDGGPNLY PB1 InfluenzaA PMID:34811538 tetramer-sort yes amplicon-seq transitional T cells between effector and memory populations healthy healthy_3 chip0423_440030 PBMC +8900 CVVTLGF TRAV12-1*01 TRAJ34*01 CASSPGLAETYQETQYF TRBV27*01 TRBJ2-5*01 HLA-A*02:01 B2M MHCI LLAGIGTVPI PGT HomoSapiens PMID:34811538 tetramer-sort yes amplicon-seq Naive T cells healthy healthy_3 chip0423_865415 PBMC +8901 CAAAETSYDKVIF TRAV13-1*01 TRAJ50*01 CASQLAGGTGELFF TRBV24-1*01 TRBJ2-2*01 HLA-B*08:01 B2M MHCI RAKFKQLL BZLF1 EBV PMID:34811538 tetramer-sort yes amplicon-seq effector T cells T1D T1D_5 chip0423_185230 PBMC +8902 CASGTEGANVLTF TRBV25-1*01 TRBJ2-6*01 HLA-A*02:01 B2M MHCI LLAGIGTVPI PGT HomoSapiens PMID:34811538 tetramer-sort yes amplicon-seq Naive T cells healthy healthy_3 chip0423_5453 PBMC +8903 CAEMETSYDKVIF TRAV13-2*01 TRAJ50*01 CASSLLGTVDNSPLHF TRBV7-9*01 TRBJ1-6*01 HLA-B*08:01 B2M MHCI RAKFKQLL BZLF1 EBV PMID:34811538 tetramer-sort yes amplicon-seq effector memory T cells T1D T1D_5 chip0423_289683 PBMC +8904 CASSLLGAGTGELFF TRBV7-9*01 TRBJ2-2*01 HLA-B*08:01 B2M MHCI RAKFKQLL BZLF1 EBV PMID:34811538 tetramer-sort yes amplicon-seq effector memory T cells T1D T1D_5 chip0423_272670 PBMC +8906 CAARETSYDKMIF TRAV13-1*01 TRAJ50*01 CASTNLGGFTDTQYF TRBV7-9*01 TRBJ2-3*01 HLA-B*08:01 B2M MHCI RAKFKQLL BZLF1 EBV PMID:34811538 tetramer-sort yes amplicon-seq effector T cells T1D T1D_5 chip0423_71706 PBMC +8907 CILPLAGGTSYGKLTF TRAV26-2*01 TRAJ52*01 CASRLGQAYEQYF TRBV7-8*01 TRBJ2-7*01 HLA-B*08:01 B2M MHCI FLRGRAYGL EBNA3A EBV PMID:34811538 tetramer-sort yes amplicon-seq effector T cells T1D T1D_6 chip0423_809860 PBMC +8908 CILPLAGGTSYGKLTF TRAV26-2*01 TRAJ52*01 CASSSGQAYEQYF TRBV7-8*01 TRBJ2-7*01 HLA-B*08:01 B2M MHCI FLRGRAYGL EBNA3A EBV PMID:34811538 tetramer-sort yes amplicon-seq central memory T cells healthy healthy_4 chip0423_723069 PBMC +8909 CAVYRGAGFGR*LIC TRAV12-2*01 TRAJ38*01 CASSFESGRTEAFF TRBV5-6*01 TRBJ1-1*01 HLA-B*08:01 B2M MHCI YAYAKWKL ZNT8 HomoSapiens PMID:34811538 tetramer-sort yes amplicon-seq Naive T cells T1D T1D_5 chip0423_632884 PBMC +8910 CAGNNFGNEKLTF TRAV12-3*01 TRAJ48*01 CASSQLGGVYNEQFF TRBV7-9*01 TRBJ2-1*01 HLA-B*08:01 B2M MHCI RAKFKQLL BZLF1 EBV PMID:34811538 tetramer-sort yes amplicon-seq effector T cells T1D T1D_5 chip0423_573012 PBMC +8911 CANALSNFGNEKLTF TRAV12-3*01 TRAJ48*01 CARSc?tEAFF TRBV6-1*01 TRBJ1-1*01 HLA-A*02:01 B2M MHCI LLAGIGTVPI PGT HomoSapiens PMID:34811538 tetramer-sort yes amplicon-seq Naive T cells T1D T1D_4 chip0423_452475 PBMC +8912 CAMIRDDKIIF TRAV12-3*01 TRAJ30*01 CASSATSGGASGTDTQYF TRBV9*01 TRBJ2-3*01 HLA-A*02:01 B2M MHCI ALAGIGILTV MART1 HomoSapiens PMID:34811538 tetramer-sort yes amplicon-seq transitional T cells between effector and memory populations T1D T1D_6 chip0423_551053 PBMC +8914 CAVEVDKLIF TRAV41*01 TRAJ34*01 HLA-A*01:01 B2M MHCI CTELKLSDY NP InfluenzaA PMID:34811538 tetramer-sort yes amplicon-seq transitional T cells between effector and memory populations healthy healthy_3 chip0423_81541 PBMC +8915 CAASETSYDKVIF TRAV13-1*01 TRAJ50*01 CASSFLGEDTGELFF TRBV7-9*01 TRBJ2-2*01 HLA-B*08:01 B2M MHCI RAKFKQLL BZLF1 EBV PMID:34811538 tetramer-sort yes amplicon-seq effector T cells T1D T1D_5 chip0423_73952 PBMC +8916 CAESTGKLIF TRAV5*01 TRAJ37*01 CSAGRDGTNEKLFF TRBV29-1*01 TRBJ1-4*01 HLA-A*02:01 B2M MHCI GLCTLVAML BLMF1 EBV PMID:34811538 tetramer-sort yes amplicon-seq effector T cells T1D T1D_6 chip0423_527458 PBMC +8917 CILPLAGGTSYGKLTF TRAV26-2*01 TRAJ52*01 WASCSGLAYEQYS TRBV7-8*01 TRBJ2-7*01 HLA-B*08:01 B2M MHCI FLRGRAYGL EBNA3A EBV PMID:34811538 tetramer-sort yes amplicon-seq effector memory T cells T1D T1D_4 chip0423_523552 PBMC +8918 CAFTISNSGNEKLTF TRAV12-3*01 TRAJ48*01 HLA-A*02:01 B2M MHCI LLAGIGTVPI PGT HomoSapiens PMID:34811538 tetramer-sort yes amplicon-seq Naive T cells healthy healthy_3 chip0423_836020 PBMC +8920 CAAKETSYDKVIF TRAV13-1*01 TRAJ50*01 CASSLLGGTDTGELFF TRBV7-9*01 TRBJ2-2*01 HLA-B*08:01 B2M MHCI RAKFKQLL BZLF1 EBV PMID:34811538 tetramer-sort yes amplicon-seq effector T cells T1D T1D_5 chip0423_345972 PBMC +8921 CVVTGTGEYGNKLVF TRAV12-1*01 TRAJ47*01 CASSPGALYNEQFF TRBV13*01 TRBJ2-1*01 HLA-A*02:01 B2M MHCI FLWSVFWLI IGRP HomoSapiens PMID:34811538 tetramer-sort yes amplicon-seq Naive T cells T1D T1D_4 chip0423_877613 PBMC +8922 CASSLNPVLRLDTQYF TRBV28*01 TRBJ2-3*01 HLA-B*08:01 B2M MHCI QAKWRLQTL EBNA3A EBV PMID:34811538 tetramer-sort yes amplicon-seq effector memory T cells T1D T1D_4 chip0423_47995 PBMC +8923 CAAAETSYDKVIF TRAV13-1*01 TRAJ50*01 CASQLAGGTGELFF TRBV24-1*01 TRBJ2-2*01 HLA-B*08:01 B2M MHCI RAKFKQLL BZLF1 EBV PMID:34811538 tetramer-sort yes amplicon-seq effector T cells T1D T1D_5 chip0423_44122 PBMC +8924 CSFQESFYGYTF TRBV29-1*01 TRBJ1-2*01 HLA-A*02:01 B2M MHCI GLCTLVAML BLMF1 EBV PMID:34811538 tetramer-sort yes amplicon-seq effector memory T cells healthy healthy_3 chip0423_859450 PBMC +8926 CASSLGQAYEQYF TRBV7-8*01 TRBJ2-7*01 HLA-B*08:01 B2M MHCI FLRGRAYGL EBNA3A EBV PMID:34811538 tetramer-sort yes amplicon-seq effector memory T cells T1D T1D_6 chip0423_222084 PBMC +8927 CLVGEINNDMRF TRAV4*01 TRAJ43*01 CARRFLGEGGTDTPYF TRBV11-2*01 TRBJ2-3*01 HLA-B*08:01 B2M MHCI RAKFKQLL BZLF1 EBV PMID:34811538 tetramer-sort yes amplicon-seq effector memory T cells T1D T1D_4 chip0423_140267 PBMC +8928 CAAVETSYDKVIF TRAV13-1*01 TRAJ50*01 CASSPPGSNEKLFF TRBV12-3*01,TRBV12-4*01 TRBJ1-4*01 HLA-B*08:01 B2M MHCI RAKFKQLL BZLF1 EBV PMID:34811538 tetramer-sort yes amplicon-seq effector memory T cells T1D T1D_5 chip0423_81086 PBMC +8929 CASSLPPW??gAAYNEQFF TRBV4-3*01 TRBJ2-1*01 HLA-B*08:01 B2M MHCI FLRGRAYGL EBNA3A EBV PMID:34811538 tetramer-sort yes amplicon-seq effector memory T cells T1D T1D_6 chip0423_834547 PBMC +8930 CASRFHGASKLFF TRBV7-9*01 TRBJ1-4*01 HLA-A*02:01 B2M MHCI LLQEYNWEL GAD65 HomoSapiens PMID:34811538 tetramer-sort yes amplicon-seq Naive T cells T1D T1D_6 chip0423_682981 PBMC +8931 CAVRAIPPGGFKTLF TRAV3*01 TRAJ9*01 CARSYGANTAAFF TRBV4-1*01 TRBJ1-1*01 HLA-A*02:01 B2M MHCI GILGFVFTL M1 InfluenzaA PMID:34811538 tetramer-sort yes amplicon-seq transitional T cells between effector and memory populations T1D T1D_6 chip0423_229215 PBMC +8932 CILPLAGGTSYGKLTF TRAV26-2*01 TRAJ52*01 CASSQGQAYEQYF TRBV7-8*01 TRBJ2-7*01 HLA-B*08:01 B2M MHCI FLRGRAYGL EBNA3A EBV PMID:34811538 tetramer-sort yes amplicon-seq effector memory T cells T1D T1D_4 chip0423_344494 PBMC +8933 CASSLGDSYEQYF TRBV4-1*01 TRBJ2-7*01 HLA-A*02:01 B2M MHCI ALGIGILTV MART1 HomoSapiens PMID:34811538 tetramer-sort yes amplicon-seq Naive T cells T1D T1D_6 chip0423_153283 PBMC +8934 CAAKETSYDKVIF TRAV13-1*01 TRAJ50*01 HLA-B*08:01 B2M MHCI RAKFKQLL BZLF1 EBV PMID:34811538 tetramer-sort yes amplicon-seq transitional T cells between effector and memory populations T1D T1D_5 chip0423_339485 PBMC +8935 CAMRAIEGANNLFF TRAV14/DV4*01 TRAJ36*01 HLA-B*08:01 B2M MHCI RAKFKQLL BZLF1 EBV PMID:34811538 tetramer-sort yes amplicon-seq effector T cells T1D T1D_5 chip0423_546537 PBMC +8936 CASSQVNNPGDGYTF TRBV14*01 TRBJ1-2*01 HLA-B*08:01 B2M MHCI QAKWRLQTL EBNA3A EBV PMID:34811538 tetramer-sort yes amplicon-seq effector memory T cells T1D T1D_4 chip0423_310338 PBMC +8937 LRQQ*H*gg??agGQGEAFF TRBV10-2*01 TRBJ1-1*01 HLA-B*08:01 B2M MHCI QAKWRLQTL EBNA3A EBV PMID:34811538 tetramer-sort yes amplicon-seq transitional T cells between effector and memory populations T1D T1D_6 chip0423_714570 PBMC +8938 CASSQLGGVYNEQFF TRBV7-9*01 TRBJ2-1*01 HLA-B*08:01 B2M MHCI RAKFKQLL BZLF1 EBV PMID:34811538 tetramer-sort yes amplicon-seq effector memory T cells T1D T1D_5 chip0423_430552 PBMC +8939 CASRAIDRARDGYTF TRBV7-9*01 TRBJ1-2*01 HLA-B*08:01 B2M MHCI RAKFKQLL BZLF1 EBV PMID:34811538 tetramer-sort yes amplicon-seq effector memory T cells T1D T1D_5 chip0423_418742 PBMC +8942 CASSQMSDTQYF TRBV6-2*01,TRBV6-3*01 TRBJ2-3*01 HLA-A*02:01 B2M MHCI YVLDHLIVV BRLF1 EBV PMID:34811538 tetramer-sort yes amplicon-seq effector memory T cells healthy healthy_3 chip0423_370936 PBMC +8943 CGSSAGLAYEQDF TRBV7-8*01 TRBJ2-7*01 HLA-B*08:01 B2M MHCI FLRGRAYGL EBNA3A EBV PMID:34811538 tetramer-sort yes amplicon-seq effector memory T cells healthy healthy_4 chip0423_518782 PBMC +8944 YASSVDRGYNEQFF TRBV9*01 TRBJ2-1*01 HLA-B*08:01 B2M MHCI NTYGKRNAV IAPP HomoSapiens PMID:34811538 tetramer-sort yes amplicon-seq Naive T cells T1D T1D_5 chip0423_395285 PBMC +8945 CAEMETSYDKVIF TRAV13-2*01 TRAJ50*01 CASSSLSGGAGNEQFF TRBV7-9*01 TRBJ2-1*01 HLA-B*08:01 B2M MHCI RAKFKQLL BZLF1 EBV PMID:34811538 tetramer-sort yes amplicon-seq effector memory T cells T1D T1D_5 chip0423_177794 PBMC +8946 CALLMDTGRRALTF TRAV19*01 TRAJ5*01 CSVGSGEGYEQYF TRBV29-1*01 TRBJ2-7*01 HLA-B*08:01 B2M MHCI RAKFKQLL BZLF1 EBV PMID:34811538 tetramer-sort yes amplicon-seq effector memory T cells T1D T1D_4 chip0423_99674 PBMC +8947 CASSLDREYSGANVLTF TRBV7-8*01 TRBJ2-6*01 HLA-B*08:01 B2M MHCI RAKFKQLL BZLF1 EBV PMID:34811538 tetramer-sort yes amplicon-seq effector memory T cells T1D T1D_5 chip0423_826193 PBMC +8948 CATVAYFGQNFVF TRAV17*01 TRAJ26*01 CASSLGTEGTGGGYEQYF TRBV5-1*01 TRBJ2-7*01 HLA-A*02:01 B2M MHCI ILSAHVATA ZNT8 HomoSapiens PMID:34811538 tetramer-sort yes amplicon-seq Naive T cells healthy healthy_4 chip0423_586943 PBMC +8949 CAASETSYDKVIF TRAV13-1*01 TRAJ50*01 CASSPLGQNTEAFF TRBV7-9*01 TRBJ1-1*01 HLA-B*08:01 B2M MHCI RAKFKQLL BZLF1 EBV PMID:34811538 tetramer-sort yes amplicon-seq effector T cells T1D T1D_5 chip0423_667580 PBMC +8950 CASSYSGGYEQYF TRBV6-5*01 TRBJ2-7*01 HLA-A*02:01 B2M MHCI ALAGIGILTV MART1 HomoSapiens PMID:34811538 tetramer-sort yes amplicon-seq Naive T cells T1D T1D_6 chip0423_269597 PBMC +8951 CAAAETSYDKVIF TRAV13-1*01 TRAJ50*01 CASQLAGGTGELFF TRBV24-1*01 TRBJ2-2*01 HLA-B*08:01 B2M MHCI RAKFKQLL BZLF1 EBV PMID:34811538 tetramer-sort yes amplicon-seq effector memory T cells T1D T1D_5 chip0423_174986 PBMC +8952 CAVRAVFSGGYNKLIF TRAV21*01 TRAJ4*01 CASTPSRAGRYTF TRBV12-3*01,TRBV12-4*01 TRBJ1-2*01 HLA-A*01:01 B2M MHCI HSNLNDATY NP InfluenzaA PMID:34811538 tetramer-sort yes amplicon-seq Naive T cells T1D T1D_6 chip0423_807702 PBMC +8953 CAALETSYDKVIF TRAV13-1*01 TRAJ50*01 CASSPDGSTGELFF TRBV12-3*01,TRBV12-4*01 TRBJ2-2*01 HLA-B*08:01 B2M MHCI RAKFKQLL BZLF1 EBV PMID:34811538 tetramer-sort yes amplicon-seq effector memory T cells T1D T1D_5 chip0423_546067 PBMC +8954 CVPRETSYDKVIF TRAV13-1*01 TRAJ50*01 CASSFLGRDHTGELFF TRBV7-9*01 TRBJ2-2*01 HLA-B*08:01 B2M MHCI RAKFKQLL BZLF1 EBV PMID:34811538 tetramer-sort yes amplicon-seq effector memory T cells T1D T1D_5 chip0423_16648 PBMC +8955 CAPSETSYDKVIS TRAV13-1*01 TRAJ50*01 CASSLVQGAHNEQFF TRBV7-9*01 TRBJ2-1*01 HLA-B*08:01 B2M MHCI RAKFKQLL BZLF1 EBV PMID:34811538 tetramer-sort yes amplicon-seq effector memory T cells T1D T1D_5 chip0423_589065 PBMC +8956 CASSSLSGGAGNEQFF TRBV7-9*01 TRBJ2-1*01 HLA-B*08:01 B2M MHCI RAKFKQLL BZLF1 EBV PMID:34811538 tetramer-sort yes amplicon-seq effector T cells T1D T1D_5 chip0423_257119 PBMC +8957 CVVNGENARLMF TRAV12-1*01 TRAJ31*01 CASSEMWGAPLHF TRBV2*01 TRBJ1-6*01 HLA-A*01:01 B2M MHCI CTELKLSDY NP InfluenzaA PMID:34811538 tetramer-sort yes amplicon-seq transitional T cells between effector and memory populations healthy healthy_3 chip0423_682530 PBMC +8958 CILPLAGGTSYGKLTF TRAV26-2*01 TRAJ52*01 CASSLGQAYEQYF TRBV7-8*01 TRBJ2-7*01 HLA-B*08:01 B2M MHCI FLRGRAYGL EBNA3A EBV PMID:34811538 tetramer-sort yes amplicon-seq effector memory T cells T1D T1D_6 chip0423_567971 PBMC +8959 CGGSCTAPLLF TRAV27*01 TRAJ34*01 CASSSTGGGDQPQHF TRBV7-9*01 TRBJ1-5*01 HLA-B*08:01 B2M MHCI RAKFKQLL BZLF1 EBV PMID:34811538 tetramer-sort yes amplicon-seq effector memory T cells T1D T1D_4 chip0423_514849 PBMC +8960 CASTHPQDVNTGELFF TRBV7-9*01 TRBJ2-2*01 HLA-B*08:01 B2M MHCI RAKFKQLL BZLF1 EBV PMID:34811538 tetramer-sort yes amplicon-seq effector memory T cells T1D T1D_5 chip0423_793433 PBMC +8961 CASSQVNNPGDGYTF TRBV14*01 TRBJ1-2*01 HLA-B*08:01 B2M MHCI QAKWRLQTL EBNA3A EBV PMID:34811538 tetramer-sort yes amplicon-seq effector memory T cells T1D T1D_4 chip0423_792525 PBMC +8962 CASSQDYGRGGYTF TRBV4-1*01 TRBJ1-2*01 HLA-B*08:01 B2M MHCI CPLSKILL LMP2A EBV PMID:34811538 tetramer-sort yes amplicon-seq effector memory T cells T1D T1D_6 chip0423_773234 PBMC +8963 CAPASGGSYIPTF TRAV24*01 TRAJ6*01 CASCRDGTYEQYF TRBV10-3*01 TRBJ2-7*01 HLA-A*01:01 B2M MHCI CTELKLSDY NP InfluenzaA PMID:34811538 tetramer-sort yes amplicon-seq transitional T cells between effector and memory populations healthy healthy_3 chip0423_772265 PBMC +8964 CAMREWGNTDKLIF TRAV14/DV4*01 TRAJ34*01 HLA-B*08:01 B2M MHCI ILKGKFQTA NP InfluenzaA PMID:34811538 tetramer-sort yes amplicon-seq Naive T cells T1D T1D_5 chip0423_494985 PBMC +8965 CASSFLGQSQETQYF TRBV7-9*01 TRBJ2-5*01 HLA-B*08:01 B2M MHCI RAKFKQLL BZLF1 EBV PMID:34811538 tetramer-sort yes amplicon-seq effector T cells T1D T1D_5 chip0423_851941 PBMC +8966 CATQGMGLGVHNEQFF TRBV2*01 TRBJ2-1*01 HLA-A*02:01 B2M MHCI LLAGIGTVPI PGT HomoSapiens PMID:34811538 tetramer-sort yes amplicon-seq Naive T cells T1D T1D_6 chip0423_849535 PBMC +8967 CAVSDRNFNKFYF TRAV8-4*01 TRAJ21*01 CSAKD??tQPQHF TRBV20-1*01 TRBJ1-5*01 HLA-A*01:01 B2M MHCI CTELKLSDY NP InfluenzaA PMID:34811538 tetramer-sort yes amplicon-seq effector T cells healthy healthy_3 chip0423_754519 PBMC +8968 CSASGGLGTQYF TRBV20-1*01 TRBJ2-3*01 HLA-A*02:01 B2M MHCI LLAGIGTVPI PGT HomoSapiens PMID:34811538 tetramer-sort yes amplicon-seq Naive T cells T1D T1D_4 chip0423_439136 PBMC +8969 CASSFTGSSGNTIYF TRBV12-3*01,TRBV12-4*01 TRBJ1-3*01 HLA-B*08:01 B2M MHCI RAKFKQLL BZLF1 EBV PMID:34811538 tetramer-sort yes amplicon-seq effector memory T cells T1D T1D_5 chip0423_434846 PBMC +8970 CASSPMGAENTEAFF TRBV7-9*01 TRBJ1-1*01 HLA-B*08:01 B2M MHCI RAKFKQLL BZLF1 EBV PMID:34811538 tetramer-sort yes amplicon-seq effector memory T cells T1D T1D_5 chip0423_281709 PBMC +8971 CALRRGTc?cNAGNSTF TRAV9-2*01 TRAJ27*01 HLA-A*02:01 B2M MHCI GLCTLVAML BLMF1 EBV PMID:34811538 tetramer-sort yes amplicon-seq effector memory T cells T1D T1D_4 chip0423_70805 PBMC +8972 CAMSEGRGGGSTCRLSF TRAV12-3*01 TRAJ53*01 CASSLTNTPGGTQYF TRBV7-3*01 TRBJ2-3*01 HLA-B*08:01 B2M MHCI CPLSKILL LMP2A EBV PMID:34811538 tetramer-sort yes amplicon-seq Naive T cells T1D T1D_5 chip0423_632959 PBMC +8973 CILVWF??tARQLTF TRAV26-2*01 TRAJ22*01 HLA-A*01:01 B2M MHCI CTELKLSDY NP InfluenzaA PMID:34811538 tetramer-sort yes amplicon-seq transitional T cells between effector and memory populations healthy healthy_3 chip0423_440756 PBMC +8974 CAYGGDTGFQKLVF TRAV13-1*01 TRAJ8*01 CASSFSAGGPGTGELFF TRBV5-1*01 TRBJ2-2*01 HLA-B*08:01 B2M MHCI RAKFKQLL BZLF1 EBV PMID:34811538 tetramer-sort yes amplicon-seq effector memory T cells T1D T1D_4 chip0423_70341 PBMC +8975 CASSLGRSTEAFF TRAV36/DV7*01 TRAJ40*01 CASSLGRSTEAFF TRBV7-9*01 TRBJ1-1*01 HLA-B*08:01 B2M MHCI YAKWKLCSA ZNT8 HomoSapiens PMID:34811538 tetramer-sort yes amplicon-seq Naive T cells T1D T1D_6 chip0423_416819 PBMC +8977 CALSALNNQGAQKLVF TRAV19*01 TRAJ54*01 RASSLDSPSYYEQYF TRBV11-2*01 TRBJ2-7*01 HLA-A*02:01 B2M MHCI LLMEGVPKSL ZNT8 HomoSapiens PMID:34811538 tetramer-sort yes amplicon-seq effector memory T cells healthy healthy_4 chip0423_424598 PBMC +8978 YALSEASRtt?YNQGGSLIF TRAV19*01 TRAJ23*01 CASSSFVGGGNTIYF TRBV13*01 TRBJ1-3*01 HLA-A*02:01 B2M MHCI ALWMRLLPL PREINS HomoSapiens PMID:34811538 tetramer-sort yes amplicon-seq Naive T cells T1D T1D_6 chip0423_298071 PBMC +8980 CASSLVQGVHNEQFF TRBV7-9*01 TRBJ2-1*01 HLA-B*08:01 B2M MHCI RAKFKQLL BZLF1 EBV PMID:34811538 tetramer-sort yes amplicon-seq effector T cells T1D T1D_5 chip0423_512130 PBMC +8981 CASKDFHSAEQYF TRBV27*01 TRBJ2-7*01 HLA-A*02:01 B2M MHCI ILMHCQTTL GAD65 HomoSapiens PMID:34811538 tetramer-sort yes amplicon-seq transitional T cells between effector and memory populations healthy healthy_3 chip0423_220207 PBMC +8982 CSASPLGETQYF TRBV20-1*01 TRBJ2-5*01 HLA-A*02:01 B2M MHCI YVLDHLIVV BRLF1 EBV PMID:34811538 tetramer-sort yes amplicon-seq Naive T cells T1D T1D_4 chip0423_831725 PBMC +8983 CAASETSYDKVIF TRAV13-1*01 TRAJ50*01 CASSLLGDSSGNTIYF TRBV7-9*01 TRBJ1-3*01 HLA-B*08:01 B2M MHCI RAKFKQLL BZLF1 EBV PMID:34811538 tetramer-sort yes amplicon-seq effector T cells T1D T1D_5 chip0423_381862 PBMC +8984 CAATETSYDKVIF TRAV13-1*01 TRAJ50*01 CASSLMGRINSPLHF TRBV7-9*01 TRBJ1-6*01 HLA-B*08:01 B2M MHCI RAKFKQLL BZLF1 EBV PMID:34811538 tetramer-sort yes amplicon-seq central memory T cells T1D T1D_5 chip0423_789314 PBMC +8985 SAAVLRat??gtRSIPTF TRAV13-1*01 TRAJ6*01 CASSSGLAHSYEQYF TRBV6-2*01,TRBV6-3*01 TRBJ2-7*01 HLA-B*08:01 B2M MHCI QAKWRLQTL EBNA3A EBV PMID:34811538 tetramer-sort yes amplicon-seq Naive T cells T1D T1D_6 chip0423_226579 PBMC +8986 FSPVGGACCYKLFF TRAV17*01 TRAJ12*01 CASSQALGGGGTEAFF TRBV4-3*01 TRBJ1-1*01 HLA-B*08:01 B2M MHCI NLIFKWIL G6PC2 HomoSapiens PMID:34811538 tetramer-sort yes amplicon-seq Naive T cells T1D T1D_4 chip0423_681726 PBMC +8987 CAFRAFLg?tGYIKLPF TRAV38-1*01 TRAJ4*01 CSVGAGGTNEKLFF TRBV29-1*01 TRBJ1-4*01 HLA-A*02:01 B2M MHCI GLCTLVAML BLMF1 EBV PMID:34811538 tetramer-sort yes amplicon-seq effector T cells healthy healthy_4 chip0423_369084 PBMC +8988 CASQLAGGTGELFF TRBV24-1*01 TRBJ2-2*01 HLA-B*08:01 B2M MHCI RAKFKQLL BZLF1 EBV PMID:34811538 tetramer-sort yes amplicon-seq effector memory T cells T1D T1D_5 chip0423_312914 PBMC +8989 GVLPLAGAASSGTLPF TRAV26-2*01 TRAJ52*01 CASSLGQAYEQYF TRBV7-8*01 TRBJ2-7*01 HLA-B*08:01 B2M MHCI FLRGRAYGL EBNA3A EBV PMID:34811538 tetramer-sort yes amplicon-seq transitional T cells between effector and memory populations T1D T1D_4 chip0423_761653 PBMC +8991 CASNTSTAGKLAF TRAV29/DV5*01 TRAJ44*01 CSATDPLQYGYTF TRBV20-1*01 TRBJ1-2*01 HLA-A*02:01 B2M MHCI YVLDHLIVV BRLF1 EBV PMID:34811538 tetramer-sort yes amplicon-seq effector memory T cells T1D T1D_4 chip0423_273581 PBMC +8992 CASSLAVGEGPQHF TRBV7-9*01 TRBJ1-5*01 HLA-B*08:01 B2M MHCI RAKFKQLL BZLF1 EBV PMID:34811538 tetramer-sort yes amplicon-seq effector T cells T1D T1D_4 chip0423_59565 PBMC +8993 CGTEPDSGNTPLVF TRAV30*01 TRAJ29*01 CASSWGPEQYF TRBV7-9*01 TRBJ2-7*01 HLA-B*08:01 B2M MHCI FLRGRAYGL EBNA3A EBV PMID:34811538 tetramer-sort yes amplicon-seq effector T cells T1D T1D_4 chip0423_8252 PBMC +8994 CAMREGEGGGFKTIF TRAV14/DV4*01 TRAJ9*01 CASSSGLAGGSHTGELFF TRBV11-1*01 TRBJ2-2*01 HLA-B*08:01 B2M MHCI RAKFKQLL BZLF1 EBV PMID:34811538 tetramer-sort yes amplicon-seq effector T cells T1D T1D_5 chip0423_829189 PBMC +8995 CAASETSYDKVIF TRAV13-1*01 TRAJ50*01 CASSSLGVKDSPLHF TRBV7-9*01 TRBJ1-6*01 HLA-B*08:01 B2M MHCI RAKFKQLL BZLF1 EBV PMID:34811538 tetramer-sort yes amplicon-seq effector T cells T1D T1D_5 chip0423_705277 PBMC +8996 CAVEKKNTDKLIF TRAV21*01 TRAJ34*01 CASSLNVGEGAGNTIYF TRBV7-6*01 TRBJ1-3*01 HLA-B*08:01 B2M MHCI RAKFKQLL BZLF1 EBV PMID:34811538 tetramer-sort yes amplicon-seq effector T cells healthy healthy_4 chip0423_575541 PBMC +8997 CASRYAAGVSPLHF TRAV9-1*01 TRAJ11*01 CASSYAAGVSPLHF TRBV6-2*01,TRBV6-3*01 TRBJ1-6*01 HLA-A*02:01 B2M MHCI LLAGIGTVPI PGT HomoSapiens PMID:34811538 tetramer-sort yes amplicon-seq Naive T cells T1D T1D_6 chip0423_680834 PBMC +8998 CILPLEGGTSYGKLTF TRAV26-2*01 TRAJ52*01 CARSSGQASEPYF TRBV7-8*01 TRBJ2-7*01 HLA-B*08:01 B2M MHCI FLRGRAYGL EBNA3A EBV PMID:34811538 tetramer-sort yes amplicon-seq effector memory T cells T1D T1D_4 chip0423_704895 PBMC +8999 CASSGLAGVHSYEQYF TRBV2*01 TRBJ2-7*01 HLA-A*01:01 B2M MHCI LVSDGGPNLY PB1 InfluenzaA PMID:34811538 tetramer-sort yes amplicon-seq effector T cells healthy healthy_3 chip0423_590613 PBMC +9000 CASSFTGSSGNTIYF TRBV12-3*01,TRBV12-4*01 TRBJ1-3*01 HLA-B*08:01 B2M MHCI RAKFKQLL BZLF1 EBV PMID:34811538 tetramer-sort yes amplicon-seq effector memory T cells T1D T1D_5 chip0423_441120 PBMC +9002 CASIPKQENTIYF TRBV12-3*01,TRBV12-4*01 TRBJ1-3*01 HLA-B*08:01 B2M MHCI RAKFKQLL BZLF1 EBV PMID:34811538 tetramer-sort yes amplicon-seq effector T cells T1D T1D_5 chip0423_788378 PBMC +9003 CASSLRPENSPLHF TRBV13*01 TRBJ1-6*01 HLA-A*02:01 B2M MHCI LVGPTPVNI POL HIV-1 PMID:34811538 tetramer-sort yes amplicon-seq Naive T cells healthy healthy_3 chip0423_687434 PBMC +9004 CATAGRSAFSTLTF TRAV17*01 TRAJ11*01 CASSQVNNPGDGYTF TRBV14*01 TRBJ1-2*01 HLA-B*08:01 B2M MHCI QAKWRLQTL EBNA3A EBV PMID:34811538 tetramer-sort yes amplicon-seq effector memory T cells T1D T1D_4 chip0423_440285 PBMC +9005 CAGRGRF TRAV21*01 TRAJ37*01 CASSLDSNSAEQYF TRBV7-9*01 TRBJ2-7*01 HLA-A*02:01 B2M MHCI FMYSDFHFI PA InfluenzaA PMID:34811538 tetramer-sort yes amplicon-seq Naive T cells T1D T1D_6 chip0423_53997 PBMC +9006 CASTQVGSPHYGYTF TRBV7-9*01 TRBJ1-2*01 HLA-B*08:01 B2M MHCI RAKFKQLL BZLF1 EBV PMID:34811538 tetramer-sort yes amplicon-seq effector T cells T1D T1D_5 chip0423_674703 PBMC +9007 CAVNEGGTSYGKLTF TRAV12-2*01 TRAJ52*01 CASTLSGGTEAFF TRBV28*01 TRBJ1-1*01 HLA-A*02:01 B2M MHCI LLAGIGTVPI PGT HomoSapiens PMID:34811538 tetramer-sort yes amplicon-seq Naive T cells healthy healthy_3 chip0423_558288 PBMC +9009 CASSSDGMNTEAFF TRBV10-2*01 TRBJ1-1*01 HLA-A*02:01 B2M MHCI CLGGLLTMV LMP2A EBV PMID:34811538 tetramer-sort yes amplicon-seq effector memory T cells healthy healthy_4 chip0423_799168 PBMC +9013 CAPASGGSYIPTF TRAV24*01 TRAJ6*01 CASCRDGTYEQYF TRBV10-3*01 TRBJ2-7*01 HLA-A*01:01 B2M MHCI CTELKLSDY NP InfluenzaA PMID:34811538 tetramer-sort yes amplicon-seq transitional T cells between effector and memory populations healthy healthy_3 chip0423_514676 PBMC +9014 CASSPDGSTGELFF TRBV12-3*01,TRBV12-4*01 TRBJ2-2*01 HLA-B*08:01 B2M MHCI RAKFKQLL BZLF1 EBV PMID:34811538 tetramer-sort yes amplicon-seq effector memory T cells T1D T1D_5 chip0423_404072 PBMC +9015 CAMRGGPGNTDKLIF TRAV14/DV4*01 TRAJ34*01 HLA-A*02:01 B2M MHCI PLTFGWCYKL NEF InfluenzaA PMID:34811538 tetramer-sort yes amplicon-seq Naive T cells T1D T1D_4 chip0423_432717 PBMC +9016 CSVGTSYGYTF TRBV29-1*01 TRBJ1-2*01 HLA-B*08:01 B2M MHCI RAKFKQLL BZLF1 EBV PMID:34811538 tetramer-sort yes amplicon-seq effector memory T cells T1D T1D_5 chip0423_298478 PBMC +9017 CAVYSSASKIIF TRAV12-2*01 TRAJ3*01 CSAREAPLLKDSNDQFF TRBV20-1*01 TRBJ2-1*01 HLA-A*01:01 B2M MHCI CTELKLSDY NP InfluenzaA PMID:34811538 tetramer-sort yes amplicon-seq transitional T cells between effector and memory populations healthy healthy_3 chip0423_34417 PBMC +9018 CASSLGGVILTDTQYF TRBV28*01 TRBJ2-3*01 HLA-A*01:01 B2M MHCI ALDIEIATY GFAP HomoSapiens PMID:34811538 tetramer-sort yes amplicon-seq Naive T cells T1D T1D_6 chip0423_529780 PBMC +9019 CAVMVYGKLTF TRAV12-2*01 TRAJ52*01 HLA-A*02:01 B2M MHCI LLAGIGTVPI PGT HomoSapiens PMID:34811538 tetramer-sort yes amplicon-seq Naive T cells healthy healthy_3 chip0423_831498 PBMC +9021 CSADSYRDIDNYGYTF TRBV20-1*01 TRBJ1-2*01 HLA-A*01:01 B2M MHCI CTELKLSDY NP InfluenzaA PMID:34811538 tetramer-sort yes amplicon-seq transitional T cells between effector and memory populations healthy healthy_3 chip0423_298365 PBMC +9022 CILQQca??caGKLIF TRAV26-2*01 TRAJ37*01 CASRLLGSGLGSTIYF TRBV7-9*01 TRBJ1-3*01 HLA-B*08:01 B2M MHCI RAKFKQLL BZLF1 EBV PMID:34811538 tetramer-sort yes amplicon-seq effector memory T cells T1D T1D_5 chip0423_120990 PBMC +9023 CASSPLGSNEKLFF TRBV7-9*01 TRBJ1-4*01 HLA-B*08:01 B2M MHCI RAKFKQLL BZLF1 EBV PMID:34811538 tetramer-sort yes amplicon-seq effector memory T cells T1D T1D_5 chip0423_18968 PBMC +9024 CAASLDNTDKLIF TRAV29/DV5*01 TRAJ34*01 CASTPDGRQVQPQHF TRBV27*01 TRBJ1-5*01 HLA-B*08:01 B2M MHCI RAKFKQLL BZLF1 EBV PMID:34811538 tetramer-sort yes amplicon-seq effector memory T cells T1D T1D_4 chip0423_500448 PBMC +9026 YASSPLGSNEKLFF TRAV20*01,TRAV36/DV7*01 TRAJ5*01 CASSPLGSNEKLFF TRBV7-9*01 TRBJ1-4*01 HLA-B*08:01 B2M MHCI RAKFKQLL BZLF1 EBV PMID:34811538 tetramer-sort yes amplicon-seq effector memory T cells T1D T1D_5 chip0423_505194 PBMC +9027 CAVSPYNTNKLIF TRAV12-2*01 TRAJ34*01 CASSLLGDVREKLFF TRBV9*01 TRBJ1-4*01 HLA-B*08:01 B2M MHCI EIYKRWII Gag HIV-1 PMID:34811538 tetramer-sort yes amplicon-seq Naive T cells T1D T1D_5 chip0423_487441 PBMC +9028 CASTGTSDSTDTQYF TRBV2*01 TRBJ2-3*01 HLA-A*01:01 B2M MHCI CTELKLSDY NP InfluenzaA PMID:34811538 tetramer-sort yes amplicon-seq transitional T cells between effector and memory populations healthy healthy_3 chip0423_75806 PBMC +9029 CAVQAAG??cTGNRFCF TRAV20*01 TRAJ49*01 HLA-A*01:01 B2M MHCI CTELKLSDY NP InfluenzaA PMID:34811538 tetramer-sort yes amplicon-seq transitional T cells between effector and memory populations healthy healthy_3 chip0423_832429 PBMC +9030 CASSDIREGQGEAFF TRBV10-2*01 TRBJ1-1*01 HLA-B*08:01 B2M MHCI QAKWRLQTL EBNA3A EBV PMID:34811538 tetramer-sort yes amplicon-seq central memory T cells T1D T1D_6 chip0423_520481 PBMC +9031 CASSQDQITEGGNYGYTF TRBV3-1*01 TRBJ1-2*01 HLA-A*02:01 B2M MHCI VLFGLGFAI IGRP HomoSapiens PMID:34811538 tetramer-sort yes amplicon-seq transitional T cells between effector and memory populations healthy healthy_3 chip0423_474258 PBMC +9032 CSARGGGGYNEQFF TRBV20-1*01 TRBJ2-1*01 HLA-A*02:01 B2M MHCI LLAGIGTVPI PGT HomoSapiens PMID:34811538 tetramer-sort yes amplicon-seq Naive T cells healthy healthy_3 chip0423_418373 PBMC +9033 CAVKDTDKLIF TRAV8-1*01 TRAJ34*01 CASSYSAGFTGELFF TRBV6-5*01 TRBJ2-2*01 HLA-A*02:01 B2M MHCI YVLDHLIVV BRLF1 EBV PMID:34811538 tetramer-sort yes amplicon-seq effector memory T cells healthy healthy_4 chip0423_471335 PBMC +9034 CASGQSGYSTLTC TRAV17*01 TRAJ11*01 CASSLGGAETQYF TRBV7-9*01 TRBJ2-5*01 HLA-A*01:01 B2M MHCI VTDAAHLLI ZNT8 HomoSapiens PMID:34811538 tetramer-sort yes amplicon-seq Naive T cells T1D T1D_6 chip0423_91421 PBMC +9035 CAAAATYTYIF TRAV12-1*01 TRAJ40*01 CAVDGNYDTEAFF TRBV19*01 TRBJ1-1*01 HLA-A*02:01 B2M MHCI ALAGIGILTV MART1 HomoSapiens PMID:34811538 tetramer-sort yes amplicon-seq Naive T cells T1D T1D_4 chip0423_671791 PBMC +9036 CTVATMAct?SNTRTLFF TRAV22*01 TRAJ37*01 HLA-B*08:01 B2M MHCI ELRSRYWAI NP InfluenzaA PMID:34811538 tetramer-sort yes amplicon-seq transitional T cells between effector and memory populations T1D T1D_6 chip0423_390474 PBMC +9037 CASSEMWGAPLHF TRBV2*01 TRBJ1-6*01 HLA-A*01:01 B2M MHCI CTELKLSDY NP InfluenzaA PMID:34811538 tetramer-sort yes amplicon-seq transitional T cells between effector and memory populations healthy healthy_3 chip0423_359108 PBMC +9038 CAIYMDTHYAFIW TRAV12-3*01 TRAJ33*01 CASSQLMFPDTQYF TRBV7-2*01 TRBJ2-3*01 HLA-B*08:01 B2M MHCI RAKFKQLL BZLF1 EBV PMID:34811538 tetramer-sort yes amplicon-seq effector memory T cells T1D T1D_4 chip0423_542998 PBMC +9039 CARPRDRGLPEQFF TRBV6-2*01,TRBV6-3*01 TRBJ2-1*01 HLA-A*01:01 B2M MHCI VTDAAHLLI ZNT8 HomoSapiens PMID:34811538 tetramer-sort yes amplicon-seq effector memory T cells healthy healthy_3 chip0423_126702 PBMC +9040 CASSQPGQIVLFF TRBV4-1*01 TRBJ2-2*01 HLA-B*08:01 B2M MHCI QAKWRLQTL EBNA3A EBV PMID:34811538 tetramer-sort yes amplicon-seq Naive T cells T1D T1D_5 chip0423_573570 PBMC +9042 CVARTGGFEAIF TRAV5*01 TRAJ9*01 CASSSAGLSNQPQHF TRBV7-9*01 TRBJ1-5*01 HLA-B*08:01 B2M MHCI YLKDQQLL gp160 HIV-1 PMID:34811538 tetramer-sort yes amplicon-seq Naive T cells T1D T1D_6 chip0423_711037 PBMC +9043 CILPLAGGTSYGKLTF TRAV26-2*01 TRAJ52*01 CASSLGQAYEQYF TRBV7-8*01 TRBJ2-7*01 HLA-B*08:01 B2M MHCI FLRGRAYGL EBNA3A EBV PMID:34811538 tetramer-sort yes amplicon-seq effector T cells T1D T1D_6 chip0423_537913 PBMC +9044 WALLQLSa?cIFAGFYF TRAV9-2*01 TRAJ21*01 HLA-A*02:01 B2M MHCI GILGFVFTL M1 InfluenzaA PMID:34811538 tetramer-sort yes amplicon-seq effector T cells healthy healthy_4 chip0423_13372 PBMC +9045 CAMLRSc?tRKHHIF TRBV12-3*01,TRBV12-4*01 TRBJ1-3*01 HLA-A*02:01 B2M MHCI IQATVMIIV ZNT8 HomoSapiens PMID:34811538 tetramer-sort yes amplicon-seq Naive T cells healthy healthy_3 chip0423_479139 PBMC +9047 CASSEMWGAPLHF TRBV2*01 TRBJ1-6*01 HLA-A*01:01 B2M MHCI CTELKLSDY NP InfluenzaA PMID:34811538 tetramer-sort yes amplicon-seq transitional T cells between effector and memory populations healthy healthy_3 chip0423_782014 PBMC +9048 CAVEDQGRSYNTDKLIF TRAV2*01 TRAJ34*01 CASSLNVGEGAGNTIYF TRBV7-6*01 TRBJ1-3*01 HLA-B*08:01 B2M MHCI RAKFKQLL BZLF1 EBV PMID:34811538 tetramer-sort yes amplicon-seq effector memory T cells healthy healthy_4 chip0423_467961 PBMC +9049 CASSRIPGQGARPDPNTGELFF TRBV28*01 TRBJ2-2*01 HLA-A*02:01 B2M MHCI CLGGLLTMV LMP2A EBV PMID:34811538 tetramer-sort yes amplicon-seq effector memory T cells T1D T1D_4 chip0423_175811 PBMC +9050 CAESGAGNNRKLIW TRAV5*01 TRAJ38*01 CASWGPRVEKLFF TRBV2*01 TRBJ1-4*01 HLA-B*08:01 B2M MHCI YLKDQQLL gp160 HIV-1 PMID:34811538 tetramer-sort yes amplicon-seq Naive T cells T1D T1D_6 chip0423_27766 PBMC +9051 CASSPPGGGNTGELFF TRBV18*01 TRBJ2-2*01 HLA-B*08:01 B2M MHCI RAKFKQLL BZLF1 EBV PMID:34811538 tetramer-sort yes amplicon-seq effector memory T cells T1D T1D_5 chip0423_579459 PBMC +9053 CILPLAGGTSYGKLTF TRAV26-2*01 TRAJ52*01 CASSLGQAYEQYF TRBV7-8*01 TRBJ2-7*01 HLA-B*08:01 B2M MHCI FLRGRAYGL EBNA3A EBV PMID:34811538 tetramer-sort yes amplicon-seq effector memory T cells T1D T1D_6 chip0423_50378 PBMC +9054 CAVLPSNDYKLSF TRAV12-3*01 TRAJ20*01 HLA-A*01:01 B2M MHCI CTELKLSDY NP InfluenzaA PMID:34811538 tetramer-sort yes amplicon-seq effector memory T cells healthy healthy_3 chip0423_695179 PBMC +9055 CASSISDEGANYYGHTF TRBV19*01 TRBJ1-2*01 HLA-A*01:01 B2M MHCI CTELKLSDY NP InfluenzaA PMID:34811538 tetramer-sort yes amplicon-seq Naive T cells T1D T1D_4 chip0423_686724 PBMC +9056 CAAAETSYDKVIF TRAV13-1*01 TRAJ50*01 CASSALGQTHTEAFF TRBV7-9*01 TRBJ1-1*01 HLA-B*08:01 B2M MHCI RAKFKQLL BZLF1 EBV PMID:34811538 tetramer-sort yes amplicon-seq effector memory T cells T1D T1D_5 chip0423_549298 PBMC +9057 CSAGRDGTNEKLSF TRBV29-1*01 TRBJ1-4*01 HLA-A*02:01 B2M MHCI GLCTLVAML BLMF1 EBV PMID:34811538 tetramer-sort yes amplicon-seq effector memory T cells T1D T1D_6 chip0423_531589 PBMC +9058 CAVVHPLYGGATNKLIF TRAV8-3*01 TRAJ32*01 CASSQELRGSTDTQYF TRBV14*01 TRBJ2-3*01 HLA-B*08:01 B2M MHCI HLKRNIVV GFAP HomoSapiens PMID:34811538 tetramer-sort yes amplicon-seq Naive T cells T1D T1D_6 chip0423_529580 PBMC +9060 CAATETSYDKVIF TRAV13-1*01 TRAJ50*01 CDSSLLGVRDRENEQYF TRBV11-1*01 TRBJ2-7*01 HLA-B*08:01 B2M MHCI RAKFKQLL BZLF1 EBV PMID:34811538 tetramer-sort yes amplicon-seq effector T cells T1D T1D_5 chip0423_9773 PBMC +9061 CAVKEGGKLIF TRAV8-1*01 TRAJ23*01 HLA-A*02:01 B2M MHCI YVLDHLIVV BRLF1 EBV PMID:34811538 tetramer-sort yes amplicon-seq effector memory T cells healthy healthy_3 chip0423_443674 PBMC +9062 CAMSLSNFGNEKLTF TRAV12-3*01 TRAJ48*01 CASSRRQAQETQYF TRBV11-1*01 TRBJ2-5*01 HLA-A*02:01 B2M MHCI LLAGIGTVPI PGT HomoSapiens PMID:34811538 tetramer-sort yes amplicon-seq Naive T cells healthy healthy_3 chip0423_572069 PBMC +9063 CASSGRVEEYGGELFF TRBV27*01 TRBJ2-2*01 HLA-B*08:01 B2M MHCI RAKFKQLL BZLF1 EBV PMID:34811538 tetramer-sort yes amplicon-seq effector memory T cells T1D T1D_5 chip0423_358760 PBMC +9064 CASSLNVGEGAGNTIYF TRBV7-6*01 TRBJ1-3*01 HLA-B*08:01 B2M MHCI RAKFKQLL BZLF1 EBV PMID:34811538 tetramer-sort yes amplicon-seq effector memory T cells healthy healthy_4 chip0423_528131 PBMC +9065 RILREL??cGYGIDF TRAV26-2*01 TRAJ41*01 CASSQLGEAKEGTEAFF TRBV11-1*01 TRBJ1-1*01 HLA-B*08:01 B2M MHCI RAKFKQLL BZLF1 EBV PMID:34811538 tetramer-sort yes amplicon-seq effector T cells T1D T1D_5 chip0423_365414 PBMC +9066 CALCDRGSTLGRLYF TRAV19*01 TRAJ18*01 CASSLGREIGPIEQFF TRBV7-8*01 TRBJ2-1*01 HLA-B*08:01 B2M MHCI RAKFKQLL BZLF1 EBV PMID:34811538 tetramer-sort yes amplicon-seq transitional T cells between effector and memory populations T1D T1D_5 chip0423_613780 PBMC +9068 CAVEDQGRSCVTDQLIS TRAV2*01 TRAJ34*01 HLA-B*08:01 B2M MHCI RAKFKQLL BZLF1 EBV PMID:34811538 tetramer-sort yes amplicon-seq effector memory T cells healthy healthy_4 chip0423_27300 PBMC +9070 CASSLAVGEGPQHF TRBV7-9*01 TRBJ1-5*01 HLA-B*08:01 B2M MHCI RAKFKQLL BZLF1 EBV PMID:34811538 tetramer-sort yes amplicon-seq effector T cells T1D T1D_4 chip0423_390856 PBMC +9071 CAMREGEAGGFKTIF TRAV14/DV4*01 TRAJ9*01 CASSPLAGTQQYF TRBV14*01 TRBJ2-7*01 HLA-B*08:01 B2M MHCI RAKFKQLL BZLF1 EBV PMID:34811538 tetramer-sort yes amplicon-seq effector memory T cells T1D T1D_5 chip0423_10224 PBMC +9073 CAWSDYKDKNYGYTF TRBV30*01 TRBJ1-2*01 HLA-A*01:01 B2M MHCI CTELKLSDY NP InfluenzaA PMID:34811538 tetramer-sort yes amplicon-seq transitional T cells between effector and memory populations healthy healthy_3 chip0423_841452 PBMC +9074 CASDRDSGYTPLVC TRAV30*01 TRAJ29*01 CASSWGPEAFF TRBV7-9*01 TRBJ1-1*01 HLA-B*08:01 B2M MHCI FLRGRAYGL EBNA3A EBV PMID:34811538 tetramer-sort yes amplicon-seq effector memory T cells T1D T1D_4 chip0423_654460 PBMC +9075 CADYSSASKIIF TRAV1-1*01 TRAJ3*01 HLA-A*01:01 B2M MHCI CTELKLSDY NP InfluenzaA PMID:34811538 tetramer-sort yes amplicon-seq transitional T cells between effector and memory populations healthy healthy_3 chip0423_576866 PBMC +9076 CASSSRSAIEQFF TRBV19*01 TRBJ2-1*01 HLA-A*02:01 B2M MHCI GILGFVFTL M1 InfluenzaA PMID:34811538 tetramer-sort yes amplicon-seq transitional T cells between effector and memory populations T1D T1D_4 chip0423_541283 PBMC +9077 CASSLAVGEGPQHF TRBV7-9*01 TRBJ1-5*01 HLA-B*08:01 B2M MHCI RAKFKQLL BZLF1 EBV PMID:34811538 tetramer-sort yes amplicon-seq effector T cells T1D T1D_4 chip0423_472430 PBMC +9078 CAETETSYDKVIF TRAV13-2*01 TRAJ50*01 CASSFTSGTDPELFF TRBV7-9*01 TRBJ2-2*01 HLA-B*08:01 B2M MHCI RAKFKQLL BZLF1 EBV PMID:34811538 tetramer-sort yes amplicon-seq effector T cells T1D T1D_5 chip0423_187149 PBMC +9079 CASSLVLSSANEQFL TRBV7-2*01 TRBJ2-1*01 HLA-A*01:01 B2M MHCI VTDAAHLLI ZNT8 HomoSapiens PMID:34811538 tetramer-sort yes amplicon-seq Naive T cells T1D T1D_5 chip0423_143779 PBMC +9080 CAFMK*LS??gGSNYKLTF TRAV38-1*01 TRAJ53*01 CASGYPNTEAFF TRBV6-5*01,TRBV6-1*01 TRBJ1-1*01 HLA-A*01:01 B2M MHCI VTDAAHLLI ZNT8 HomoSapiens PMID:34811538 tetramer-sort yes amplicon-seq Naive T cells T1D T1D_4 chip0423_127452 PBMC +9081 CVGYMNTGFQKLVF TRAV12-1*01 TRAJ8*01 CASSELGMDEQFF TRBV6-4*01 TRBJ2-1*01 HLA-A*01:01 B2M MHCI HSNLNDATY NP InfluenzaA PMID:34811538 tetramer-sort yes amplicon-seq Naive T cells T1D T1D_4 chip0423_809626 PBMC +9082 CASSLGQAYEQYF TRBV7-8*01 TRBJ2-7*01 HLA-B*08:01 B2M MHCI FLRGRAYGL EBNA3A EBV PMID:34811538 tetramer-sort yes amplicon-seq effector memory T cells T1D T1D_6 chip0423_769389 PBMC +9083 CAMAISNFGNEKLTF TRAV12-3*01 TRAJ48*01 CASSQTGSLNTEAFF TRBV4-1*01 TRBJ1-1*01 HLA-A*02:01 B2M MHCI LLAGIGTVPI PGT HomoSapiens PMID:34811538 tetramer-sort yes amplicon-seq Naive T cells T1D T1D_6 chip0423_353714 PBMC +9085 CAVITGTASKLTF TRAV12-2*01 TRAJ44*01 CASSISPTGVEQYF TRBV19*01 TRBJ2-7*01 HLA-A*02:01 B2M MHCI LLAGIGTVPI PGT HomoSapiens PMID:34811538 tetramer-sort yes amplicon-seq transitional T cells between effector and memory populations healthy healthy_3 chip0423_185461 PBMC +9086 CASSQLGGVYNEQFF TRBV7-9*01 TRBJ2-1*01 HLA-B*08:01 B2M MHCI RAKFKQLL BZLF1 EBV PMID:34811538 tetramer-sort yes amplicon-seq effector memory T cells T1D T1D_5 chip0423_136389 PBMC +9087 CASSPQLLGQRSDGYTF TRBV12-3*01,TRBV12-4*01 TRBJ1-2*01 HLA-A*02:01 B2M MHCI LLAGIGTVPI PGT HomoSapiens PMID:34811538 tetramer-sort yes amplicon-seq Naive T cells healthy healthy_3 chip0423_131430 PBMC +9088 CAMSASNFGNEKLTF TRAV12-3*01 TRAJ48*01 CASSSDRASNSGANVLTF TRBV5-5*01 TRBJ2-6*01 HLA-A*02:01 B2M MHCI LLAGIGTVPI PGT HomoSapiens PMID:34811538 tetramer-sort yes amplicon-seq Naive T cells T1D T1D_4 chip0423_815344 PBMC +9089 CAVGSPNYGGSQGNLIF TRAV36/DV7*01 TRAJ42*01 HLA-A*01:01 B2M MHCI CTELKLSDY NP InfluenzaA PMID:34811538 tetramer-sort yes amplicon-seq effector T cells healthy healthy_3 chip0423_443468 PBMC +9090 CAASETSYDKVIF TRAV13-1*01 TRAJ50*01 CASSWLGDRYNSPLHF TRBV7-9*01 TRBJ1-6*01 HLA-B*08:01 B2M MHCI RAKFKQLL BZLF1 EBV PMID:34811538 tetramer-sort yes amplicon-seq effector memory T cells T1D T1D_5 chip0423_461326 PBMC +9091 CAMREGGVSGGYNKLIF TRAV14/DV4*01 TRAJ4*01 HLA-B*08:01 B2M MHCI NLIFKWIL G6PC2 HomoSapiens PMID:34811538 tetramer-sort yes amplicon-seq Naive T cells T1D T1D_5 chip0423_396711 PBMC +9092 CAAEETSYDKVIF TRAV13-1*01 TRAJ50*01 CASSLLGETENTIYF TRBV7-9*01 TRBJ1-3*01 HLA-B*08:01 B2M MHCI RAKFKQLL BZLF1 EBV PMID:34811538 tetramer-sort yes amplicon-seq effector T cells T1D T1D_5 chip0423_120212 PBMC +9093 CASSSLSGGAGNEQFF TRBV7-9*01 TRBJ2-1*01 HLA-B*08:01 B2M MHCI RAKFKQLL BZLF1 EBV PMID:34811538 tetramer-sort yes amplicon-seq effector T cells T1D T1D_5 chip0423_3030 PBMC +9094 CASSSMNTEAFF TRBV13*01 TRBJ1-1*01 HLA-A*02:01 B2M MHCI SLISGMWLL VP2 RotavirusA PMID:34811538 tetramer-sort yes amplicon-seq Naive T cells healthy healthy_3 chip0423_538178 PBMC +9095 CSATSYRDTDRNTIYF TRBV20-1*01 TRBJ1-3*01 HLA-A*01:01 B2M MHCI CTELKLSDY NP InfluenzaA PMID:34811538 tetramer-sort yes amplicon-seq transitional T cells between effector and memory populations healthy healthy_3 chip0423_206389 PBMC +9097 CIVRVGGGTSYGKLTF TRAV26-1*01 TRAJ52*01 CASSATQGLGNIQYF TRBV9*01 TRBJ2-4*01 HLA-B*08:01 B2M MHCI LRLRLDQL GFAP HomoSapiens PMID:34811538 tetramer-sort yes amplicon-seq Naive T cells T1D T1D_6 chip0423_806065 PBMC +9098 CALNKAGNALIF TRAV9-2*01 TRAJ15*01 CASSLSPGTAHNTGELFF TRBV27*01 TRBJ2-2*01 HLA-B*08:01 B2M MHCI ALKCKGFHV NP InfluenzaA PMID:34811538 tetramer-sort yes amplicon-seq Naive T cells T1D T1D_5 chip0423_819779 PBMC +9099 CASSYGARLSTDTQYF TRBV6-5*01 TRBJ2-3*01 HLA-B*08:01 B2M MHCI YVMVTAAL G6PC2 HomoSapiens PMID:34811538 tetramer-sort yes amplicon-seq Naive T cells T1D T1D_5 chip0423_724013 PBMC +9100 CSAHLRTSQYNEQFF TRBV20-1*01 TRBJ2-1*01 HLA-B*08:01 B2M MHCI QAKWRLQTL EBNA3A EBV PMID:34811538 tetramer-sort yes amplicon-seq Naive T cells T1D T1D_5 chip0423_493435 PBMC +9101 CAMSRSNFGNEKLTF TRAV12-3*01 TRAJ48*01 CSVPGESSPETDYGYTF TRBV29-1*01 TRBJ1-2*01 HLA-A*02:01 B2M MHCI LLAGIGTVPI PGT HomoSapiens PMID:34811538 tetramer-sort yes amplicon-seq Naive T cells healthy healthy_3 chip0423_472651 PBMC +9102 CAMAFKGGFGNVLPSGSGTQV TRAV12-3*01 TRAJ41*01 HLA-B*08:01 B2M MHCI RAKFKQLL BZLF1 EBV PMID:34811538 tetramer-sort yes amplicon-seq effector T cells T1D T1D_4 chip0423_824674 PBMC +9103 CATAGGSGCRTLTF TRAV17*01 TRAJ11*01 HLA-A*02:01 B2M MHCI FLYALALLL LMP2 EBV PMID:34811538 tetramer-sort yes amplicon-seq effector memory T cells T1D T1D_6 chip0423_658774 PBMC +9104 CASSLGPNSPLHF TRBV12-3*01,TRBV12-4*01 TRBJ1-6*01 HLA-A*02:01 B2M MHCI LVGPTPVNI POL HIV-1 PMID:34811538 tetramer-sort yes amplicon-seq Naive T cells T1D T1D_6 chip0423_452107 PBMC +9105 CAMTLSNFGHEKLTF TRAV12-3*01 TRAJ48*01 CASSPRQGADGNTIYF TRBV19*01 TRBJ1-3*01 HLA-A*02:01 B2M MHCI LLAGIGTVPI PGT HomoSapiens PMID:34811538 tetramer-sort yes amplicon-seq Naive T cells T1D T1D_4 chip0423_164091 PBMC +9106 CIVRVPHPTGTASKLTF TRAV26-1*01 TRAJ44*01 LCQ*YLct??gcSYEQYF TRBV19*01 TRBJ2-7*01 HLA-A*02:01 B2M MHCI GILGFVFTL M1 InfluenzaA PMID:34811538 tetramer-sort yes amplicon-seq transitional T cells between effector and memory populations healthy healthy_3 chip0423_16827 PBMC +9107 CAMTISNFGGAFLPF TRAV12-3*01 TRAJ48*01 CASTSDTGRWEKLFF TRBV7-9*01 TRBJ1-4*01 HLA-A*02:01 B2M MHCI LLAGIGTVPI PGT HomoSapiens PMID:34811538 tetramer-sort yes amplicon-seq Naive T cells T1D T1D_6 chip0423_706338 PBMC +9109 CAMSLSNFGHETLPF TRAV12-3*01 TRAJ48*01 HLA-A*02:01 B2M MHCI LLAGIGTVPI PGT HomoSapiens PMID:34811538 tetramer-sort yes amplicon-seq Naive T cells T1D T1D_6 chip0423_283084 PBMC +9110 CASSLFLGDRPYEQYF TRBV5-8*01 TRBJ2-7*01 HLA-A*01:01 B2M MHCI CTELKLSDY NP InfluenzaA PMID:34811538 tetramer-sort yes amplicon-seq Naive T cells healthy healthy_3 chip0423_498154 PBMC +9111 CAVVMYSGGGADGLTF TRAV12-2*01 TRAJ45*01 HLA-A*02:01 B2M MHCI LLAGIGTVPI PGT HomoSapiens PMID:34811538 tetramer-sort yes amplicon-seq Naive T cells healthy healthy_3 chip0423_78914 PBMC +9112 CAVRRHQAGTALIF TRAV3*01 TRAJ15*01 CASSFGVGDTEETQYF TRBV5-4*01 TRBJ2-5*01 HLA-A*01:01 B2M MHCI CTELKLSDY NP InfluenzaA PMID:34811538 tetramer-sort yes amplicon-seq transitional T cells between effector and memory populations healthy healthy_3 chip0423_473120 PBMC +9113 CASSLWETQYF TRBV12-3*01,TRBV12-4*01 TRBJ2-5*01 HLA-A*02:01 B2M MHCI YLLLRVLNI IGRP HomoSapiens PMID:34811538 tetramer-sort yes amplicon-seq Naive T cells healthy healthy_3 chip0423_619454 PBMC +9115 CASSEMGGGYNEQFF TRBV2*01 TRBJ2-1*01 HLA-A*02:01 B2M MHCI LLAGIGTVPI PGT HomoSapiens PMID:34811538 tetramer-sort yes amplicon-seq transitional T cells between effector and memory populations healthy healthy_3 chip0423_756982 PBMC +9116 CAVSDGEGAQKLVF TRAV8-6*01 TRAJ54*01 HLA-B*08:01 B2M MHCI RAKFKQLL BZLF1 EBV PMID:34811538 tetramer-sort yes amplicon-seq effector memory T cells T1D T1D_4 chip0423_713664 PBMC +9117 CASSLLSGQGANYGYTF TRBV11-1*01 TRBJ1-2*01 HLA-B*08:01 B2M MHCI RAKFKQLL BZLF1 EBV PMID:34811538 tetramer-sort yes amplicon-seq effector T cells T1D T1D_5 chip0423_255191 PBMC +9119 CAGQSNTGKLIF TRAV12-2*01 TRAJ37*01 CASSVRSAYEQYF TRBV19*01 TRBJ2-7*01 HLA-A*02:01 B2M MHCI GILGFVFTL M1 InfluenzaA PMID:34811538 tetramer-sort yes amplicon-seq transitional T cells between effector and memory populations T1D T1D_4 chip0423_800969 PBMC +9121 CAMSRYGQNFVS TRAV12-3*01 TRAJ26*01 CASSSGVGYEQYF TRBV27*01 TRBJ2-7*01 HLA-A*02:01 B2M MHCI ALGIGILTV MART1 HomoSapiens PMID:34811538 tetramer-sort yes amplicon-seq Naive T cells T1D T1D_6 chip0423_802150 PBMC +9122 CAVGGGADGLTF TRAV12-2*01 TRAJ45*01 CASSYLAGGNEQFF TRBV6-5*01 TRBJ2-1*01 HLA-A*02:01 B2M MHCI ALAGIGILTV MART1 HomoSapiens PMID:34811538 tetramer-sort yes amplicon-seq Naive T cells T1D T1D_4 chip0423_210239 PBMC +9123 CAAPPLIYHQGGKLIL TRAV8-1*01 TRAJ23*01 HLA-B*08:01 B2M MHCI RAKFKQLL BZLF1 EBV PMID:34811538 tetramer-sort yes amplicon-seq effector T cells healthy healthy_4 chip0423_701697 PBMC +9124 CILPLAGGTSYGKLTF TRAV26-2*01 TRAJ52*01 HLA-B*08:01 B2M MHCI FLRGRAYGL EBNA3A EBV PMID:34811538 tetramer-sort yes amplicon-seq effector T cells healthy healthy_4 chip0423_834795 PBMC +9125 CAGSASNFGNEKLTF TRAV12-3*01 TRAJ48*01 CASSLVAVAVTGELFF TRBV28*01 TRBJ2-2*01 HLA-A*02:01 B2M MHCI LLAGIGTVPI PGT HomoSapiens PMID:34811538 tetramer-sort yes amplicon-seq Naive T cells T1D T1D_6 chip0423_539899 PBMC +9126 CADSTGGGNKLTF TRAV12-2*01 TRAJ10*01 CASSYGQGEQYF TRBV6-2*01,TRBV6-3*01 TRBJ2-7*01 HLA-A*02:01 B2M MHCI LLAGIGTVPI PGT HomoSapiens PMID:34811538 tetramer-sort yes amplicon-seq Naive T cells healthy healthy_3 chip0423_374459 PBMC +9127 CASSLELGFPYEQYF TRBV5-1*01 TRBJ2-7*01 HLA-B*08:01 B2M MHCI QAKWRLQTL EBNA3A EBV PMID:34811538 tetramer-sort yes amplicon-seq effector memory T cells T1D T1D_4 chip0423_257148 PBMC +9128 CRGVDYKLSF TRAV26-1*01 TRAJ20*01 CASSEAERDGPSGANVLTF TRBV6-1*01 TRBJ2-6*01 HLA-A*02:01 B2M MHCI LLAGIGTVPI PGT HomoSapiens PMID:34811538 tetramer-sort yes amplicon-seq Naive T cells healthy healthy_4 chip0423_77082 PBMC +9129 CIVPNNNDMRF TRAV26-1*01 TRAJ43*01 HLA-A*02:01 B2M MHCI ALGIGILTV MART1 HomoSapiens PMID:34811538 tetramer-sort yes amplicon-seq Naive T cells T1D T1D_6 chip0423_695922 PBMC +9130 CSAGRDGTNEKLFF TRBV29-1*01 TRBJ1-4*01 HLA-A*02:01 B2M MHCI GLCTLVAML BLMF1 EBV PMID:34811538 tetramer-sort yes amplicon-seq effector memory T cells T1D T1D_6 chip0423_372463 PBMC +9131 CILPLAGGTSYGKLTF TRAV26-2*01 TRAJ52*01 CASSLGQAYEQYF TRBV7-8*01 TRBJ2-7*01 HLA-B*08:01 B2M MHCI FLRGRAYGL EBNA3A EBV PMID:34811538 tetramer-sort yes amplicon-seq effector memory T cells healthy healthy_4 chip0423_644214 PBMC +9132 CAASETSYDKVIF TRAV13-1*01 TRAJ50*01 HLA-B*08:01 B2M MHCI RAKFKQLL BZLF1 EBV PMID:34811538 tetramer-sort yes amplicon-seq effector memory T cells T1D T1D_5 chip0423_615635 PBMC +9133 CAASETSYDKVIF TRAV13-1*01 TRAJ50*01 CASRPLQGAGEKLFF TRBV7-9*01 TRBJ1-4*01 HLA-B*08:01 B2M MHCI RAKFKQLL BZLF1 EBV PMID:34811538 tetramer-sort yes amplicon-seq effector memory T cells T1D T1D_5 chip0423_484679 PBMC +9134 CASSEMt?gGSTPPL TRAV14/DV4*01 TRAJ11*01 CASSEMWGAPLHF TRBV2*01 TRBJ1-6*01 HLA-A*01:01 B2M MHCI CTELKLSDY NP InfluenzaA PMID:34811538 tetramer-sort yes amplicon-seq transitional T cells between effector and memory populations healthy healthy_3 chip0423_244853 PBMC +9136 CAMSYSGGSNYKLTF TRAV12-3*01 TRAJ53*01 CSVGAGDYEQYF TRBV29-1*01 TRBJ2-7*01 HLA-B*08:01 B2M MHCI RAKFKQLL BZLF1 EBV PMID:34811538 tetramer-sort yes amplicon-seq effector T cells T1D T1D_4 chip0423_541374 PBMC +9137 CAMSISNFGNEKLTF TRAV12-3*01 TRAJ48*01 CASSVGVAGGPGLTDTQYF TRBV11-3*01 TRBJ2-3*01 HLA-A*02:01 B2M MHCI LLAGIGTVPI PGT HomoSapiens PMID:34811538 tetramer-sort yes amplicon-seq Naive T cells T1D T1D_4 chip0423_531106 PBMC +9138 CASSLAAGEGPQHF TRBV7-9*01 TRBJ1-5*01 HLA-B*08:01 B2M MHCI RAKFKQLL BZLF1 EBV PMID:34811538 tetramer-sort yes amplicon-seq effector T cells T1D T1D_4 chip0423_519610 PBMC +9140 CAVKDTDKLIF TRAV8-1*01 TRAJ34*01 CASSATGDYYGYTF TRBV3-1*01 TRBJ1-2*01 HLA-A*02:01 B2M MHCI YVLDHLIVV BRLF1 EBV PMID:34811538 tetramer-sort yes amplicon-seq effector T cells healthy healthy_4 chip0423_811250 PBMC +9141 CAMSHSNFGNEKLTF TRAV12-3*01 TRAJ48*01 HLA-A*02:01 B2M MHCI LLAGIGTVPI PGT HomoSapiens PMID:34811538 tetramer-sort yes amplicon-seq Naive T cells T1D T1D_6 chip0423_543604 PBMC +9142 CAATETSYDKVIF TRAV13-1*01 TRAJ50*01 CASSPPGRNEKLFF TRBV12-3*01,TRBV12-4*01 TRBJ1-4*01 HLA-B*08:01 B2M MHCI RAKFKQLL BZLF1 EBV PMID:34811538 tetramer-sort yes amplicon-seq effector T cells T1D T1D_5 chip0423_436702 PBMC +9143 CILPLAGGTSYGKLTF TRAV26-2*01 TRAJ52*01 CASSLGQAYEQYF TRBV7-8*01 TRBJ2-7*01 HLA-B*08:01 B2M MHCI FLRGRAYGL EBNA3A EBV PMID:34811538 tetramer-sort yes amplicon-seq central memory T cells T1D T1D_4 chip0423_280732 PBMC +9144 CILRVFSc?aGTFTSLV TRAV26-1*01 TRAJ40*01 CASSSTGTGEETQYF TRBV19*01 TRBJ2-5*01 HLA-A*02:01 B2M MHCI LLFNILGGWV NS4B HCV PMID:34811538 tetramer-sort yes amplicon-seq Naive T cells healthy healthy_3 chip0423_372874 PBMC +9145 CAVDSGGGADGLTF TRAV12-2*01 TRAJ45*01 HLA-A*02:01 B2M MHCI LLAGIGTVPI PGT HomoSapiens PMID:34811538 tetramer-sort yes amplicon-seq Naive T cells healthy healthy_3 chip0423_358112 PBMC +9146 CAGDSNYQLIW TRAV12-1*01 TRAJ33*01 CASSLTRIGGNTF TRBV28*01 TRBJ1-2*01 HLA-A*02:01 B2M MHCI ALAGIGILTV MART1 HomoSapiens PMID:34811538 tetramer-sort yes amplicon-seq Naive T cells T1D T1D_4 chip0423_340034 PBMC +9147 CAVNSGNTPLVF TRAV1-2*01 TRAJ29*01 CASSQVNNPGDGYTF TRBV14*01 TRBJ1-2*01 HLA-B*08:01 B2M MHCI QAKWRLQTL EBNA3A EBV PMID:34811538 tetramer-sort yes amplicon-seq effector memory T cells T1D T1D_4 chip0423_243076 PBMC +9148 CPVATMTct?RNTTQLIF TRAV2*01 TRAJ37*01 CASSLAGREGTQYF TRBV11-3*01 TRBJ2-3*01 HLA-B*08:01 B2M MHCI ELRSRYWAI NP InfluenzaA PMID:34811538 tetramer-sort yes amplicon-seq transitional T cells between effector and memory populations T1D T1D_6 chip0423_366211 PBMC +9149 CTATETSYDKVIF TRAV13-1*01 TRAJ50*01 CASSPPGRNEKLFF TRBV12-3*01,TRBV12-4*01 TRBJ1-4*01 HLA-B*08:01 B2M MHCI RAKFKQLL BZLF1 EBV PMID:34811538 tetramer-sort yes amplicon-seq effector T cells T1D T1D_5 chip0423_272046 PBMC +9150 CAFMKLTYNNNDMRF TRAV38-1*01 TRAJ43*01 CSADGYRGPYGYTF TRBV20-1*01 TRBJ1-2*01 HLA-A*01:01 B2M MHCI CTELKLSDY NP InfluenzaA PMID:34811538 tetramer-sort yes amplicon-seq transitional T cells between effector and memory populations healthy healthy_3 chip0423_804268 PBMC +9151 CLLG*G??cLGEMRF TRAV40*01 TRAJ43*01 CSAYSTGDYGYTF TRBV29-1*01 TRBJ1-2*01 HLA-A*01:01 B2M MHCI HSNLNDATY NP InfluenzaA PMID:34811538 tetramer-sort yes amplicon-seq effector memory T cells T1D T1D_6 chip0423_740506 PBMC +9152 CAASKAISGNTPLVF TRAV29/DV5*01 TRAJ29*01 CASSLAGREGTQYF TRBV11-3*01 TRBJ2-3*01 HLA-A*01:01 B2M MHCI VTDAAHLLI ZNT8 HomoSapiens PMID:34811538 tetramer-sort yes amplicon-seq Naive T cells T1D T1D_5 chip0423_513720 PBMC +9153 CIVREGGGAVGLTF TRAV26-1*01 TRAJ45*01 CASSLAVGEGPQHF TRBV7-9*01 TRBJ1-5*01 HLA-B*08:01 B2M MHCI RAKFKQLL BZLF1 EBV PMID:34811538 tetramer-sort yes amplicon-seq effector T cells T1D T1D_4 chip0423_413139 PBMC +9154 CALRLNG??cNHNDMRF TRAV19*01 TRAJ43*01 CASRCLGPSSSGNTICL TRBV6-8*01 TRBJ1-3*01 HLA-B*08:01 B2M MHCI MALWMRLL INS HomoSapiens PMID:34811538 tetramer-sort yes amplicon-seq Naive T cells T1D T1D_6 chip0423_93381 PBMC +9156 CASSSLDRGPNTGELFF TRBV12-3*01,TRBV12-4*01 TRBJ2-2*01 HLA-B*08:01 B2M MHCI RAKFKQLL BZLF1 EBV PMID:34811538 tetramer-sort yes amplicon-seq effector memory T cells T1D T1D_5 chip0423_570610 PBMC +9157 CVVGIGF TRAV12-1*01 TRAJ34*01 HLA-A*02:01 B2M MHCI LLAGIGTVPI PGT HomoSapiens PMID:34811538 tetramer-sort yes amplicon-seq Naive T cells healthy healthy_3 chip0423_195435 PBMC +9158 CAAQETSYDKVIF TRAV13-1*01 TRAJ50*01 CASTQVDRPNYGYTF TRBV7-9*01 TRBJ1-2*01 HLA-B*08:01 B2M MHCI RAKFKQLL BZLF1 EBV PMID:34811538 tetramer-sort yes amplicon-seq effector T cells T1D T1D_5 chip0423_807699 PBMC +9159 CASSLHPW??gAAYNEQVF TRBV4-3*01 TRBJ2-1*01 HLA-B*08:01 B2M MHCI FLRGRAYGL EBNA3A EBV PMID:34811538 tetramer-sort yes amplicon-seq effector T cells T1D T1D_6 chip0423_779444 PBMC +9160 CASSFAGGNTIYF TRBV28*01 TRBJ1-3*01 HLA-A*02:01 B2M MHCI LLAGIGTVPI PGT HomoSapiens PMID:34811538 tetramer-sort yes amplicon-seq Naive T cells T1D T1D_4 chip0423_409413 PBMC +9161 CASSLSTGQETQYF TRBV28*01 TRBJ2-5*01 HLA-A*01:01 B2M MHCI CTELKLSDY NP InfluenzaA PMID:34811538 tetramer-sort yes amplicon-seq effector memory T cells healthy healthy_3 chip0423_30294 PBMC +9162 CASSATGDYYGYTF TRBV3-1*01 TRBJ1-2*01 HLA-A*02:01 B2M MHCI YVLDHLIVV BRLF1 EBV PMID:34811538 tetramer-sort yes amplicon-seq effector T cells healthy healthy_4 chip0423_787432 PBMC +9163 SVVS*SGVYQTVTF TRAV8-1*01 TRAJ13*01 CSAWTSDSYNEQFF TRBV20-1*01 TRBJ2-1*01 HLA-A*02:01 B2M MHCI GILGFVFTL M1 InfluenzaA PMID:34811538 tetramer-sort yes amplicon-seq central memory T cells healthy healthy_4 chip0423_774044 PBMC +9164 CASSLGLITEAFF TRBV7-2*01 TRBJ1-1*01 HLA-A*01:01 B2M MHCI LVSDGGPNLY PB1 InfluenzaA PMID:34811538 tetramer-sort yes amplicon-seq central memory T cells healthy healthy_3 chip0423_540950 PBMC +9167 CVVPMNTGFQKLVF TRAV12-1*01 TRAJ8*01 CASRVGASDQPQHF TRBV2*01 TRBJ1-5*01 HLA-A*01:01 B2M MHCI LVSDGGPNLY PB1 InfluenzaA PMID:34811538 tetramer-sort yes amplicon-seq effector T cells healthy healthy_3 chip0423_78353 PBMC +9168 CASSLAVGEGPQHF TRBV7-9*01 TRBJ1-5*01 HLA-B*08:01 B2M MHCI RAKFKQLL BZLF1 EBV PMID:34811538 tetramer-sort yes amplicon-seq effector memory T cells T1D T1D_4 chip0423_827379 PBMC +9169 CAVRAGDGAPPLVF TRAV8-6*01 TRAJ54*01 CASSLTVLAGPNTEAFF TRBV7-3*01 TRBJ1-1*01 HLA-B*08:01 B2M MHCI RAKFKQLL BZLF1 EBV PMID:34811538 tetramer-sort yes amplicon-seq effector memory T cells T1D T1D_4 chip0423_15594 PBMC +9170 CAASETSYDKVIF TRAV13-1*01 TRAJ50*01 HLA-B*08:01 B2M MHCI RAKFKQLL BZLF1 EBV PMID:34811538 tetramer-sort yes amplicon-seq effector memory T cells T1D T1D_5 chip0423_391653 PBMC +9171 CASSQEGVRYEQYF TRBV4-1*01 TRBJ2-7*01 HLA-B*08:01 B2M MHCI RAKFKQLL BZLF1 EBV PMID:34811538 tetramer-sort yes amplicon-seq effector memory T cells T1D T1D_5 chip0423_665424 PBMC +9173 CILPLAGGTSYGKLTF TRAV26-2*01 TRAJ52*01 CASSLGQAYEQYF TRBV7-8*01 TRBJ2-7*01 HLA-B*08:01 B2M MHCI FLRGRAYGL EBNA3A EBV PMID:34811538 tetramer-sort yes amplicon-seq effector memory T cells T1D T1D_6 chip0423_642934 PBMC +9174 CAFMTNYGGSQGNPIF TRAV38-1*01 TRAJ42*01 CASSSQGNGYTF TRBV13*01 TRBJ1-2*01 HLA-B*08:01 B2M MHCI YAYAKWKL ZNT8 HomoSapiens PMID:34811538 tetramer-sort yes amplicon-seq Naive T cells T1D T1D_4 chip0423_273041 PBMC +9175 CASSLTESSGNTIYF TRBV7-9*01 TRBJ1-3*01 HLA-B*08:01 B2M MHCI RAKFKQLL BZLF1 EBV PMID:34811538 tetramer-sort yes amplicon-seq effector memory T cells T1D T1D_5 chip0423_153625 PBMC +9176 CIVIASQga?NAGDMLSF TRAV26-1*01 TRAJ39*01 HLA-A*02:01 B2M MHCI GILGFVFTL M1 InfluenzaA PMID:34811538 tetramer-sort yes amplicon-seq transitional T cells between effector and memory populations healthy healthy_3 chip0423_745488 PBMC +9177 CASSLAVGAGPQHF TRBV7-9*01 TRBJ1-5*01 HLA-B*08:01 B2M MHCI RAKFKQLL BZLF1 EBV PMID:34811538 tetramer-sort yes amplicon-seq effector T cells T1D T1D_4 chip0423_137629 PBMC +9178 CASSLDSPSYYEQYF TRBV11-2*01 TRBJ2-7*01 HLA-A*02:01 B2M MHCI LLMEGVPKSL ZNT8 HomoSapiens PMID:34811538 tetramer-sort yes amplicon-seq effector T cells healthy healthy_4 chip0423_279467 PBMC +9179 CAAPGRGSNSSGALIF TRAV2*01 TRAJ37*01 HLA-A*02:01 B2M MHCI ALAGIGILTV MART1 HomoSapiens PMID:34811538 tetramer-sort yes amplicon-seq Naive T cells T1D T1D_4 chip0423_856286 PBMC +9180 CAVIRRALTF TRAV1-1*01 TRAJ5*01 CASGGQGDSYEQYF TRBV2*01 TRBJ2-7*01 HLA-A*01:01 B2M MHCI CTELKLSDY NP InfluenzaA PMID:34811538 tetramer-sort yes amplicon-seq transitional T cells between effector and memory populations healthy healthy_3 chip0423_457863 PBMC +9181 CAGGGSQGNLIF TRAV27*01 TRAJ42*01 CASSTRSAYEQYF TRBV19*01 TRBJ2-7*01 HLA-A*02:01 B2M MHCI GILGFVFTL M1 InfluenzaA PMID:34811538 tetramer-sort yes amplicon-seq transitional T cells between effector and memory populations healthy healthy_4 chip0423_241567 PBMC +9182 CASSPITGRVLRQPQHF TRBV7-4*01 TRBJ1-5*01 HLA-B*08:01 B2M MHCI WMRLLPLLAL INS HomoSapiens PMID:34811538 tetramer-sort yes amplicon-seq Naive T cells T1D T1D_5 chip0423_735803 PBMC +9183 CASQLAGGPGELFF TRBV24-1*01 TRBJ2-2*01 HLA-B*08:01 B2M MHCI RAKFKQLL BZLF1 EBV PMID:34811538 tetramer-sort yes amplicon-seq effector T cells T1D T1D_5 chip0423_236249 PBMC +9184 CASSLWYRVETQYF TRBV5-6*01 TRBJ2-5*01 HLA-A*01:01 B2M MHCI CTELKLSDY NP InfluenzaA PMID:34811538 tetramer-sort yes amplicon-seq transitional T cells between effector and memory populations healthy healthy_3 chip0423_111807 PBMC +9186 CVVNGENARLMF TRAV12-1*01 TRAJ31*01 CANRKCg?gGAPLHF TRBV2*01 TRBJ1-6*01 HLA-A*01:01 B2M MHCI CTELKLSDY NP InfluenzaA PMID:34811538 tetramer-sort yes amplicon-seq transitional T cells between effector and memory populations healthy healthy_3 chip0423_523019 PBMC +9187 CAG??aPIF TRAV13-2*01 TRAJ37*01 HLA-B*08:01 B2M MHCI QAKWRLQTL EBNA3A EBV PMID:34811538 tetramer-sort yes amplicon-seq effector memory T cells T1D T1D_4 chip0423_432768 PBMC +9188 CASSWDTAYEQYF TRBV5-1*01 TRBJ2-7*01 HLA-B*08:01 B2M MHCI ILKLQVFL IAPP HomoSapiens PMID:34811538 tetramer-sort yes amplicon-seq Naive T cells T1D T1D_6 chip0423_361206 PBMC +9189 CAVTSSGGSSLPPF TRAV12-2*01 TRAJ6*01 CASTGLSSYNEQFF TRBV3-1*01 TRBJ2-1*01 HLA-A*02:01 B2M MHCI VMNILLQYV GAD65 HomoSapiens PMID:34811538 tetramer-sort yes amplicon-seq Naive T cells healthy healthy_3 chip0423_848962 PBMC +9190 CIVRVgt?RDQFYF TRAV26-1*01 TRAJ49*01 CASSPGFRTPEGGYTF TRBV3-1*01 TRBJ1-2*01 HLA-A*01:01 B2M MHCI CTELKLSDY NP InfluenzaA PMID:34811538 tetramer-sort yes amplicon-seq transitional T cells between effector and memory populations healthy healthy_3 chip0423_805971 PBMC +9191 CAARGSSYGKVIV TRAV13-1*01 TRAJ50*01 CATSPPGRANEQFF TRBV24-1*01 TRBJ2-1*01 HLA-B*08:01 B2M MHCI RAKFKQLL BZLF1 EBV PMID:34811538 tetramer-sort yes amplicon-seq effector memory T cells T1D T1D_5 chip0423_389250 PBMC +9192 CSVEAWGEAFF TRBV29-1*01 TRBJ1-1*01 HLA-B*08:01 B2M MHCI EGHLKRNIV GFAP HomoSapiens PMID:34811538 tetramer-sort yes amplicon-seq Naive T cells T1D T1D_5 chip0423_795992 PBMC +9193 CAAAETSYDKVIF TRAV13-1*01 TRAJ50*01 CASQLAGGTGELFF TRBV24-1*01 TRBJ2-2*01 HLA-B*08:01 B2M MHCI RAKFKQLL BZLF1 EBV PMID:34811538 tetramer-sort yes amplicon-seq effector memory T cells T1D T1D_5 chip0423_258411 PBMC +9195 CLVGDMLNFRPTNPDMRF TRAV4*01 TRAJ43*01 CASSQEGLTEAFF TRBV3-1*01 TRBJ1-1*01 HLA-A*02:01 B2M MHCI FLWSVFWLI IGRP HomoSapiens PMID:34811538 tetramer-sort yes amplicon-seq Naive T cells T1D T1D_6 chip0423_626511 PBMC +9198 CASSGRVEEYGGELFF TRBV27*01 TRBJ2-2*01 HLA-B*08:01 B2M MHCI RAKFKQLL BZLF1 EBV PMID:34811538 tetramer-sort yes amplicon-seq effector T cells T1D T1D_5 chip0423_496524 PBMC +9199 CGADATSGTYKYIF TRAV34*01 TRAJ40*01 CSVGSGEGYEQYF TRBV29-1*01 TRBJ2-7*01 HLA-B*08:01 B2M MHCI RAKFKQLL BZLF1 EBV PMID:34811538 tetramer-sort yes amplicon-seq effector memory T cells T1D T1D_4 chip0423_561039 PBMC +9200 CAATETSYDKVIF TRAV13-1*01 TRAJ50*01 CASSPPGRNEKLFF TRBV12-3*01,TRBV12-4*01 TRBJ1-4*01 HLA-B*08:01 B2M MHCI RAKFKQLL BZLF1 EBV PMID:34811538 tetramer-sort yes amplicon-seq effector memory T cells T1D T1D_5 chip0423_571334 PBMC +9201 CATHPKDRYGYTF TRBV19*01 TRBJ1-2*01 HLA-A*01:01 B2M MHCI CTELKLSDY NP InfluenzaA PMID:34811538 tetramer-sort yes amplicon-seq Naive T cells T1D T1D_4 chip0423_220126 PBMC +9202 CAGARNNDMRF TRAV27*01 TRAJ43*01 CASSSVGGGYEQYF TRBV7-6*01 TRBJ2-7*01 HLA-B*08:01 B2M MHCI WMRLLPLL INS HomoSapiens PMID:34811538 tetramer-sort yes amplicon-seq Naive T cells T1D T1D_4 chip0423_70289 PBMC +9204 CVVILDTGFQKLVF TRAV8-2*01 TRAJ8*01 CASSPGSYEQYF TRBV11-3*01 TRBJ2-7*01 HLA-A*02:01 B2M MHCI LLAGIGTVPI PGT HomoSapiens PMID:34811538 tetramer-sort yes amplicon-seq Naive T cells T1D T1D_6 chip0423_640613 PBMC +9205 CASTGTSDSTDTQYF TRBV2*01 TRBJ2-3*01 HLA-A*01:01 B2M MHCI CTELKLSDY NP InfluenzaA PMID:34811538 tetramer-sort yes amplicon-seq transitional T cells between effector and memory populations healthy healthy_3 chip0423_529252 PBMC +9206 CASSQEDSRWEQFF TRBV14*01 TRBJ2-1*01 HLA-A*02:01 B2M MHCI YLLEMLWRL LMP1 EBV PMID:34811538 tetramer-sort yes amplicon-seq effector memory T cells T1D T1D_4 chip0423_247175 PBMC +9207 CAMGGFLYPSRRTITC TRAV14/DV4*01 TRAJ5*01 CASSIDQGFRQPQHF TRBV19*01 TRBJ1-5*01 HLA-A*01:01 B2M MHCI LVSDGGPNLY PB1 InfluenzaA PMID:34811538 tetramer-sort yes amplicon-seq Naive T cells T1D T1D_6 chip0423_787444 PBMC +9208 CASSLLLNTEAFF TRBV7-3*01 TRBJ1-1*01 HLA-A*02:01 B2M MHCI CLGGLLTMV LMP2A EBV PMID:34811538 tetramer-sort yes amplicon-seq central memory T cells healthy healthy_3 chip0423_569323 PBMC +9209 CAEMETSYDRVIF TRAV13-2*01 TRAJ50*01 CASSSLSGGAGNEQFF TRBV7-9*01 TRBJ2-1*01 HLA-B*08:01 B2M MHCI RAKFKQLL BZLF1 EBV PMID:34811538 tetramer-sort yes amplicon-seq effector T cells T1D T1D_5 chip0423_313203 PBMC +9211 CASSLGQSYEQYF TRBV7-7*01 TRBJ2-7*01 HLA-A*02:01 B2M MHCI ALGIGILTV MART1 HomoSapiens PMID:34811538 tetramer-sort yes amplicon-seq Naive T cells T1D T1D_6 chip0423_278681 PBMC +9213 CAGGETSYDKVIF TRAV13-1*01 TRAJ50*01 CASSSLGTGDTEAFF TRBV7-9*01 TRBJ1-1*01 HLA-B*08:01 B2M MHCI RAKFKQLL BZLF1 EBV PMID:34811538 tetramer-sort yes amplicon-seq transitional T cells between effector and memory populations T1D T1D_5 chip0423_456802 PBMC +9214 CGADPRNQGAQKLVF TRAV34*01 TRAJ54*01 CASSFLGTGLNEQYF TRBV28*01 TRBJ2-7*01 HLA-B*08:01 B2M MHCI MALWMRLL INS HomoSapiens PMID:34811538 tetramer-sort yes amplicon-seq Naive T cells T1D T1D_4 chip0423_270098 PBMC +9215 CAVNIRNQGGKLIF TRAV12-2*01 TRAJ23*01 CASSQDGGASSGQPQHF TRBV4-1*01 TRBJ1-5*01 HLA-A*02:01 B2M MHCI ELAGIGILTV MART1 HomoSapiens PMID:34811538 tetramer-sort yes amplicon-seq Naive T cells T1D T1D_6 chip0423_246375 PBMC +9216 CAVGSDGQKLLF TRAV12-2*01 TRAJ16*01 CASRPLSVVALSF TRBV6-2*01,TRBV6-3*01 TRBJ2-7*01 HLA-A*02:01 B2M MHCI LLAGIGTVPI PGT HomoSapiens PMID:34811538 tetramer-sort yes amplicon-seq Naive T cells T1D T1D_4 chip0423_643013 PBMC +9217 CAVGGGGGGQKLVF TRAV8-6*01 TRAJ54*01 CASSLTVLAGPNTEAFF TRBV7-3*01 TRBJ1-1*01 HLA-B*08:01 B2M MHCI RAKFKQLL BZLF1 EBV PMID:34811538 tetramer-sort yes amplicon-seq effector memory T cells T1D T1D_4 chip0423_450263 PBMC +9218 CSVEDYGDRGRETQYF TRBV29-1*01 TRBJ2-5*01 HLA-A*02:01 B2M MHCI NLFLFLFAV IGRP HomoSapiens PMID:34811538 tetramer-sort yes amplicon-seq central memory T cells healthy healthy_4 chip0423_856691 PBMC +9219 CAIARRGTNEKLFF TRAV24*01,TRAV14/DV4*01 TRAJ5*01 CAIARRGTNEKLFF TRBV28*01 TRBJ1-4*01 HLA-B*08:01 B2M MHCI RAKFKQLL BZLF1 EBV PMID:34811538 tetramer-sort yes amplicon-seq central memory T cells T1D T1D_5 chip0423_526150 PBMC +9220 CADYSSASKIIL TRAV1-1*01 TRAJ3*01 HLA-A*01:01 B2M MHCI CTELKLSDY NP InfluenzaA PMID:34811538 tetramer-sort yes amplicon-seq transitional T cells between effector and memory populations healthy healthy_3 chip0423_565319 PBMC +9221 CAGLYVRSNYQLIW TRAV39*01 TRAJ33*01 HLA-B*08:01 B2M MHCI MMIARFKM GAD2 HomoSapiens PMID:34811538 tetramer-sort yes amplicon-seq Naive T cells T1D T1D_4 chip0423_289963 PBMC +9222 CASSLAVGEGPQHF TRBV7-9*01 TRBJ1-5*01 HLA-B*08:01 B2M MHCI RAKFKQLL BZLF1 EBV PMID:34811538 tetramer-sort yes amplicon-seq effector memory T cells T1D T1D_4 chip0423_254719 PBMC +9223 CASSPGTGNSPLHF TRBV7-9*01 TRBJ1-6*01 HLA-B*08:01 B2M MHCI RAKFKQLL BZLF1 EBV PMID:34811538 tetramer-sort yes amplicon-seq effector memory T cells T1D T1D_5 chip0423_187847 PBMC +9224 CVVNRDDKILF TRAV12-1*01 TRAJ30*01 CASGDTEQFF TRBV9*01 TRBJ2-1*01 HLA-A*02:01 B2M MHCI LVGPTPVNI POL HIV-1 PMID:34811538 tetramer-sort yes amplicon-seq Naive T cells T1D T1D_4 chip0423_129351 PBMC +9225 CASMGGPGGLNTEAFF TRBV7-9*01 TRBJ1-1*01 HLA-B*08:01 B2M MHCI HLKRNIVV GFAP HomoSapiens PMID:34811538 tetramer-sort yes amplicon-seq Naive T cells T1D T1D_4 chip0423_24875 PBMC +9226 CAVTGDYKLSF TRAV12-2*01 TRAJ20*01 CSARTGNEQFF TRBV20-1*01 TRBJ2-1*01 HLA-A*02:01 B2M MHCI LLAGIGTVPI PGT HomoSapiens PMID:34811538 tetramer-sort yes amplicon-seq Naive T cells T1D T1D_4 chip0423_5651 PBMC +9227 CASSPLANNEQFF TRBV12-3*01,TRBV12-4*01 TRBJ2-1*01 HLA-A*02:01 B2M MHCI LLAGIGTVPI PGT HomoSapiens PMID:34811538 tetramer-sort yes amplicon-seq Naive T cells T1D T1D_4 chip0423_605193 PBMC +9228 CAESIGMLIF TRAV5*01 TRAJ34*01 CSVGTGGTNEKLFF TRBV29-1*01 TRBJ1-4*01 HLA-A*02:01 B2M MHCI GLCTLVAML BLMF1 EBV PMID:34811538 tetramer-sort yes amplicon-seq effector memory T cells T1D T1D_6 chip0423_751549 PBMC +9229 CIVREGGGADGLPF TRAV26-1*01 TRAJ45*01 CASSLAVGEGPQHF TRBV7-9*01 TRBJ1-5*01 HLA-B*08:01 B2M MHCI RAKFKQLL BZLF1 EBV PMID:34811538 tetramer-sort yes amplicon-seq effector T cells T1D T1D_4 chip0423_491740 PBMC +9230 CAVRHNTGKLIF TRAV3*01 TRAJ37*01 CASSPEGGLVSVGELFF TRBV7-8*01 TRBJ2-2*01 HLA-A*02:01 B2M MHCI ELAGIGILTV MART1 HomoSapiens PMID:34811538 tetramer-sort yes amplicon-seq Naive T cells T1D T1D_4 chip0423_96332 PBMC +9231 CASSFGGAGNTIYF TRBV13*01 TRBJ1-3*01 HLA-A*02:01 B2M MHCI LLAGIGTVPI PGT HomoSapiens PMID:34811538 tetramer-sort yes amplicon-seq Naive T cells T1D T1D_6 chip0423_105249 PBMC +9232 CASSSGTGEGYEQFF TRBV7-3*01 TRBJ2-1*01 HLA-B*08:01 B2M MHCI RAKFKQLL BZLF1 EBV PMID:34811538 tetramer-sort yes amplicon-seq effector T cells T1D T1D_4 chip0423_148374 PBMC +9233 CAFMEGGSQGNLIF TRAV38-1*01 TRAJ42*01 CASSPLNYSPLHF TRBV19*01 TRBJ1-6*01 HLA-A*02:01 B2M MHCI LLSILCIWV ZNT8 HomoSapiens PMID:34811538 tetramer-sort yes amplicon-seq Naive T cells T1D T1D_6 chip0423_58442 PBMC +9235 CASSVRSAYEQYF TRBV19*01 TRBJ2-7*01 HLA-A*02:01 B2M MHCI GILGFVFTL M1 InfluenzaA PMID:34811538 tetramer-sort yes amplicon-seq transitional T cells between effector and memory populations T1D T1D_6 chip0423_261024 PBMC +9237 CASSFTGQVNTEAFF TRBV12-3*01,TRBV12-4*01 TRBJ1-1*01 HLA-A*01:01 B2M MHCI HSNLNDATY NP InfluenzaA PMID:34811538 tetramer-sort yes amplicon-seq effector memory T cells T1D T1D_5 chip0423_758091 PBMC +9238 CAPASGGSYIPTF TRAV24*01 TRAJ6*01 CASCRDGTYEQYF TRBV10-3*01 TRBJ2-7*01 HLA-A*01:01 B2M MHCI CTELKLSDY NP InfluenzaA PMID:34811538 tetramer-sort yes amplicon-seq transitional T cells between effector and memory populations healthy healthy_3 chip0423_153836 PBMC +9239 *ALSFFAta??atAGNMLTF TRAV19*01 TRAJ39*01 CASSFDGVYGYTF TRBV28*01 TRBJ1-2*01 HLA-A*02:01 B2M MHCI YLLEMLWRL LMP1 EBV PMID:34811538 tetramer-sort yes amplicon-seq transitional T cells between effector and memory populations T1D T1D_4 chip0423_394694 PBMC +9240 CVVRGNAGHMLTF TRAV8-2*01 TRAJ39*01 HLA-A*02:01 B2M MHCI GILGFVFTL M1 InfluenzaA PMID:34811538 tetramer-sort yes amplicon-seq central memory T cells healthy healthy_3 chip0423_302881 PBMC +9241 CILPLAGGTSYGKLTF TRAV26-2*01 TRAJ52*01 HLA-B*08:01 B2M MHCI FLRGRAYGL EBNA3A EBV PMID:34811538 tetramer-sort yes amplicon-seq effector memory T cells T1D T1D_4 chip0423_213775 PBMC +9242 CAVSEKASRASKIIF TRAV8-4*01 TRAJ3*01 CASSWGGVSSYEQYF TRBV5-5*01 TRBJ2-7*01 HLA-B*08:01 B2M MHCI FLRGRAYGL EBNA3A EBV PMID:34811538 tetramer-sort yes amplicon-seq Naive T cells T1D T1D_5 chip0423_805163 PBMC +9243 CAFSPDYKLSF TRAV24*01 TRAJ20*01 CARRVVGDSYNE*FF TRBV9*01 TRBJ2-1*01 HLA-A*02:01 B2M MHCI KLQVFLIVL IAPP HomoSapiens PMID:34811538 tetramer-sort yes amplicon-seq Naive T cells T1D T1D_6 chip0423_803438 PBMC +9244 CAMREGEGGGFNTIF TRAV14/DV4*01 TRAJ9*01 HLA-B*08:01 B2M MHCI RAKFKQLL BZLF1 EBV PMID:34811538 tetramer-sort yes amplicon-seq effector T cells T1D T1D_5 chip0423_24946 PBMC +9245 CATEGESGYSTLTF TRAV17*01 TRAJ11*01 HLA-A*02:01 B2M MHCI FLYALALLL LMP2 EBV PMID:34811538 tetramer-sort yes amplicon-seq transitional T cells between effector and memory populations T1D T1D_4 chip0423_473301 PBMC +9246 CASSLAVGEGPQHF TRBV7-9*01 TRBJ1-5*01 HLA-B*08:01 B2M MHCI RAKFKQLL BZLF1 EBV PMID:34811538 tetramer-sort yes amplicon-seq effector memory T cells T1D T1D_4 chip0423_398261 PBMC +9247 CASSPPGRNEKLFF TRAV9-2*01 TRAJ5*01 CASSPPGRNEKLFF TRBV12-3*01,TRBV12-4*01 TRBJ1-4*01 HLA-B*08:01 B2M MHCI RAKFKQLL BZLF1 EBV PMID:34811538 tetramer-sort yes amplicon-seq effector memory T cells T1D T1D_5 chip0423_321919 PBMC +9248 CAWSPWDRAGQVNTEAFF TRBV30*01 TRBJ1-1*01 HLA-A*02:01 B2M MHCI GILGFVFTL M1 InfluenzaA PMID:34811538 tetramer-sort yes amplicon-seq transitional T cells between effector and memory populations healthy healthy_3 chip0423_768494 PBMC +9250 SPVGSLAct?RLPGKLFF TRAV8-3*01 TRAJ37*01 HLA-B*08:01 B2M MHCI ELRSRYWAI NP InfluenzaA PMID:34811538 tetramer-sort yes amplicon-seq transitional T cells between effector and memory populations T1D T1D_6 chip0423_468898 PBMC +9251 CAVGRMDSSYKLIF TRAV8-3*01 TRAJ12*01 CASRPSGGGYEQYF TRBV28*01 TRBJ2-7*01 HLA-A*01:01 B2M MHCI LTSLTILQLY G6PC2 HomoSapiens PMID:34811538 tetramer-sort yes amplicon-seq Naive T cells T1D T1D_5 chip0423_114242 PBMC +9252 CASSPPEGDYGYTF TRBV28*01 TRBJ1-2*01 HLA-B*08:01 B2M MHCI NLIFKWKSI G6PC2 HomoSapiens PMID:34811538 tetramer-sort yes amplicon-seq Naive T cells T1D T1D_6 chip0423_683596 PBMC +9253 CASTWVRAQPQHF TRBV6-2*01,TRBV6-3*01 TRBJ1-5*01 HLA-B*08:01 B2M MHCI YAYAKWKL ZNT8 HomoSapiens PMID:34811538 tetramer-sort yes amplicon-seq Naive T cells T1D T1D_4 chip0423_441295 PBMC +9254 CASSLRGLGSNQPQHF TRBV28*01 TRBJ1-5*01 HLA-A*02:01 B2M MHCI YVLDHLIVV BRLF1 EBV PMID:34811538 tetramer-sort yes amplicon-seq effector memory T cells healthy healthy_3 chip0423_302064 PBMC +9255 CSVGTGGTNEKLFF TRBV29-1*01 TRBJ1-4*01 HLA-A*02:01 B2M MHCI GLCTLVAML BLMF1 EBV PMID:34811538 tetramer-sort yes amplicon-seq effector memory T cells T1D T1D_4 chip0423_255091 PBMC +9256 CASSLTVLAGPNTEAFF TRBV7-3*01 TRBJ1-1*01 HLA-B*08:01 B2M MHCI RAKFKQLL BZLF1 EBV PMID:34811538 tetramer-sort yes amplicon-seq effector T cells T1D T1D_4 chip0423_48934 PBMC +9257 CAGVDGGSQGNLIF TRAV27*01 TRAJ42*01 CASSIRSSYEQYF TRBV19*01 TRBJ2-7*01 HLA-A*02:01 B2M MHCI GILGFVFTL M1 InfluenzaA PMID:34811538 tetramer-sort yes amplicon-seq transitional T cells between effector and memory populations healthy healthy_3 chip0423_20947 PBMC +9258 CAVRDIHTGGFKTIF TRAV3*01 TRAJ9*01 HLA-A*02:01 B2M MHCI GILGFVFTL M1 InfluenzaA PMID:34811538 tetramer-sort yes amplicon-seq transitional T cells between effector and memory populations T1D T1D_6 chip0423_582369 PBMC +9259 CAVRAQg?aPPKLIL TRAV13-1*01 TRAJ42*01 HLA-A*02:01 B2M MHCI RGPGRAFVTI GP160 HIV-1 PMID:34811538 tetramer-sort yes amplicon-seq Naive T cells T1D T1D_4 chip0423_440457 PBMC +9261 SAVCRVFSLRF TRAV12-1*01,TRAV21*01 TRAJ20*01 CASSLIRDRGNTIYF TRBV5-6*01 TRBJ1-3*01 HLA-A*01:01 B2M MHCI GSHLVEALY INS HomoSapiens PMID:34811538 tetramer-sort yes amplicon-seq Naive T cells T1D T1D_5 chip0423_129378 PBMC +9263 CAAQETSYDKVIF TRAV13-1*01 TRAJ50*01 CASSPWDRDSSYGYTF TRBV18*01 TRBJ1-2*01 HLA-B*08:01 B2M MHCI RAKFKQLL BZLF1 EBV PMID:34811538 tetramer-sort yes amplicon-seq effector memory T cells T1D T1D_5 chip0423_464859 PBMC +9264 CIVREGGGADGLTF TRAV26-1*01 TRAJ45*01 CASSLAVGEGPQHF TRBV7-9*01 TRBJ1-5*01 HLA-B*08:01 B2M MHCI RAKFKQLL BZLF1 EBV PMID:34811538 tetramer-sort yes amplicon-seq effector memory T cells T1D T1D_4 chip0423_187728 PBMC +9265 CASSLAAAPYNEQFF TRBV5-6*01 TRBJ2-1*01 HLA-A*01:01 B2M MHCI PTEKGANEY ZNT8 HomoSapiens PMID:34811538 tetramer-sort yes amplicon-seq Naive T cells T1D T1D_4 chip0423_777611 PBMC +9266 CIPQEc?cYKYIF TRAV26-2*01 TRAJ40*01 HLA-A*02:01 B2M MHCI LLAGIGTVPI PGT HomoSapiens PMID:34811538 tetramer-sort yes amplicon-seq Naive T cells T1D T1D_6 chip0423_523737 PBMC +9267 CASSPPDTDTQYF TRBV18*01 TRBJ2-3*01 HLA-A*01:01 B2M MHCI LVSDGGPNLY PB1 InfluenzaA PMID:34811538 tetramer-sort yes amplicon-seq Naive T cells healthy healthy_3 chip0423_131493 PBMC +9268 CVVNNGYSTLTF TRAV12-1*01 TRAJ11*01 CASSQDPSYEQYF TRBV4-1*01 TRBJ2-7*01 HLA-A*01:01 B2M MHCI LTSLTILQLY G6PC2 HomoSapiens PMID:34811538 tetramer-sort yes amplicon-seq Naive T cells T1D T1D_6 chip0423_35105 PBMC +9269 CAVCACDGGSQGNLIF TRAV1-1*01 TRAJ42*01 HLA-B*08:01 B2M MHCI MAALPRLIAF GAD2 HomoSapiens PMID:34811538 tetramer-sort yes amplicon-seq transitional T cells between effector and memory populations T1D T1D_6 chip0423_594039 PBMC +9270 CASSQDFNEQFF TRBV4-1*01 TRBJ2-1*01 HLA-B*08:01 B2M MHCI RAKFKQLL BZLF1 EBV PMID:34811538 tetramer-sort yes amplicon-seq Naive T cells T1D T1D_5 chip0423_217380 PBMC +9271 CASSPRPGYHEQYF TRBV27*01 TRBJ2-7*01 HLA-A*02:01 B2M MHCI VMNILLQYV GAD65 HomoSapiens PMID:34811538 tetramer-sort yes amplicon-seq Naive T cells healthy healthy_3 chip0423_554369 PBMC +9272 CASSQVNNPGDGYTF TRBV14*01 TRBJ1-2*01 HLA-B*08:01 B2M MHCI QAKWRLQTL EBNA3A EBV PMID:34811538 tetramer-sort yes amplicon-seq effector memory T cells T1D T1D_4 chip0423_500589 PBMC +9273 CALRACIQg?aGGAVGLIF TRAV16*01 TRAJ45*01 CSATNQYDGPDTEAFF TRBV20-1*01 TRBJ1-1*01 HLA-B*08:01 B2M MHCI RAKFKQLL BZLF1 EBV PMID:34811538 tetramer-sort yes amplicon-seq transitional T cells between effector and memory populations T1D T1D_4 chip0423_484515 PBMC +9274 CAVSNAGNMLTF TRAV12-2*01 TRAJ39*01 CASSRRTGGTDTQYF TRBV27*01 TRBJ2-3*01 HLA-A*02:01 B2M MHCI LLAGIGTVPI PGT HomoSapiens PMID:34811538 tetramer-sort yes amplicon-seq Naive T cells T1D T1D_4 chip0423_477311 PBMC +9275 CAPASGGSYIPTF TRAV24*01 TRAJ6*01 CASCRDGTYEQYF TRBV10-3*01 TRBJ2-7*01 HLA-A*01:01 B2M MHCI CTELKLSDY NP InfluenzaA PMID:34811538 tetramer-sort yes amplicon-seq transitional T cells between effector and memory populations healthy healthy_3 chip0423_262462 PBMC +9276 CASSRSSGVYEQYF TRBV28*01 TRBJ2-7*01 HLA-A*02:01 B2M MHCI LLAGIGTVPI PGT HomoSapiens PMID:34811538 tetramer-sort yes amplicon-seq Naive T cells healthy healthy_3 chip0423_95227 PBMC +9277 CAMSLSNFGNEKLTF TRAV12-3*01 TRAJ48*01 CASSTQRGGSTDTQYF TRBV9*01 TRBJ2-3*01 HLA-A*02:01 B2M MHCI LLAGIGTVPI PGT HomoSapiens PMID:34811538 tetramer-sort yes amplicon-seq Naive T cells T1D T1D_4 chip0423_204385 PBMC +9278 CASSFLGATGNTIYF TRBV7-9*01 TRBJ1-3*01 HLA-B*08:01 B2M MHCI RAKFKQLL BZLF1 EBV PMID:34811538 tetramer-sort yes amplicon-seq effector memory T cells T1D T1D_5 chip0423_773951 PBMC +9279 CASRGPGASSYNEQFF TRBV19*01 TRBJ2-1*01 HLA-A*02:01 B2M MHCI FLWSVFWLI IGRP HomoSapiens PMID:34811538 tetramer-sort yes amplicon-seq Naive T cells healthy healthy_4 chip0423_674440 PBMC +9281 CALSPNTGNQFYF TRAV19*01 TRAJ49*01 CASSLLLSTYEQYF TRBV28*01 TRBJ2-7*01 HLA-A*02:01 B2M MHCI YLQQNWWTL LMP1 EBV PMID:34811538 tetramer-sort yes amplicon-seq Naive T cells T1D T1D_4 chip0423_167852 PBMC +9282 CAVRAGAGALPLAF TRAV8-6*01 TRAJ54*01 CASSLTVLAGPNTEAFF TRBV7-3*01 TRBJ1-1*01 HLA-B*08:01 B2M MHCI RAKFKQLL BZLF1 EBV PMID:34811538 tetramer-sort yes amplicon-seq effector memory T cells T1D T1D_4 chip0423_359198 PBMC +9283 CSATTPYDGPDTEAFF TRBV20-1*01 TRBJ1-1*01 HLA-B*08:01 B2M MHCI RAKFKQLL BZLF1 EBV PMID:34811538 tetramer-sort yes amplicon-seq effector memory T cells T1D T1D_4 chip0423_264823 PBMC +9284 CALEDSGAGSYQLTF TRAV9-2*01 TRAJ28*01 WASSSQDINYNSPLHF TRBV6-5*01 TRBJ1-6*01 HLA-A*01:01 B2M MHCI CTELKLSDY NP InfluenzaA PMID:34811538 tetramer-sort yes amplicon-seq Naive T cells T1D T1D_4 chip0423_261731 PBMC +9285 CAVGSPNYGGSQGNLIF TRAV36/DV7*01 TRAJ42*01 CASSLGGRPSNGYTF TRBV7-6*01 TRBJ1-2*01 HLA-A*01:01 B2M MHCI CTELKLSDY NP InfluenzaA PMID:34811538 tetramer-sort yes amplicon-seq transitional T cells between effector and memory populations healthy healthy_3 chip0423_597633 PBMC +9286 CASGPDISYSYEQYF TRBV12-5*01 TRBJ2-7*01 HLA-B*08:01 B2M MHCI RAKFKQLL BZLF1 EBV PMID:34811538 tetramer-sort yes amplicon-seq effector memory T cells T1D T1D_5 chip0423_245449 PBMC +9287 SALHAAR??cTGAQFCF TRAV20*01 TRAJ49*01 CASSPLLATQGYEQYF TRBV19*01 TRBJ2-7*01 HLA-A*01:01 B2M MHCI CTELKLSDY NP InfluenzaA PMID:34811538 tetramer-sort yes amplicon-seq transitional T cells between effector and memory populations healthy healthy_3 chip0423_866621 PBMC +9288 CASSPPGRNEKLFF TRAV9-2*01 TRAJ5*01 CASSPPGRNEKLFF TRBV12-3*01,TRBV12-4*01 TRBJ1-4*01 HLA-B*08:01 B2M MHCI RAKFKQLL BZLF1 EBV PMID:34811538 tetramer-sort yes amplicon-seq effector memory T cells T1D T1D_5 chip0423_515263 PBMC +9289 CIVREGGGADGLPF TRAV26-1*01 TRAJ45*01 CASSLAVGEGPQHF TRBV7-9*01 TRBJ1-5*01 HLA-B*08:01 B2M MHCI RAKFKQLL BZLF1 EBV PMID:34811538 tetramer-sort yes amplicon-seq effector memory T cells T1D T1D_4 chip0423_468059 PBMC +9290 CALRECIQg?aGGADGLTF TRAV16*01 TRAJ45*01 CSATNQYDGPDTEAFF TRBV20-1*01 TRBJ1-1*01 HLA-B*08:01 B2M MHCI RAKFKQLL BZLF1 EBV PMID:34811538 tetramer-sort yes amplicon-seq transitional T cells between effector and memory populations T1D T1D_4 chip0423_46678 PBMC +9291 CASSHSSTGELFF TRBV12-3*01,TRBV12-4*01 TRBJ2-2*01 HLA-B*08:01 B2M MHCI RAKFKQLL BZLF1 EBV PMID:34811538 tetramer-sort yes amplicon-seq effector memory T cells T1D T1D_5 chip0423_824806 PBMC +9292 CAVSDGEGAQKLVF TRAV8-6*01 TRAJ54*01 CASSLTVLAGPNTEAFF TRBV7-3*01 TRBJ1-1*01 HLA-B*08:01 B2M MHCI RAKFKQLL BZLF1 EBV PMID:34811538 tetramer-sort yes amplicon-seq effector T cells T1D T1D_4 chip0423_401304 PBMC +9293 CASSQVNNPGDGYTF TRBV14*01 TRBJ1-2*01 HLA-B*08:01 B2M MHCI QAKWRLQTL EBNA3A EBV PMID:34811538 tetramer-sort yes amplicon-seq effector memory T cells T1D T1D_4 chip0423_801404 PBMC +9294 CASSWGPEAFF TRAV36/DV7*01 TRAJ40*01 CASSWGPEAFF TRBV7-9*01 TRBJ1-1*01 HLA-B*08:01 B2M MHCI FLRGRAYGL EBNA3A EBV PMID:34811538 tetramer-sort yes amplicon-seq effector memory T cells T1D T1D_4 chip0423_643807 PBMC +9295 CAMSGILTGGGNKLTF TRAV12-3*01 TRAJ10*01 HLA-B*08:01 B2M MHCI NLIFKWIL G6PC2 HomoSapiens PMID:34811538 tetramer-sort yes amplicon-seq Naive T cells T1D T1D_6 chip0423_620837 PBMC +9296 CVVNLDTDKLIF TRAV12-1*01 TRAJ34*01 CSAGQGPYEQYF TRBV29-1*01 TRBJ2-7*01 HLA-B*08:01 B2M MHCI RAKFKQLL BZLF1 EBV PMID:34811538 tetramer-sort yes amplicon-seq effector memory T cells T1D T1D_4 chip0423_115388 PBMC +9297 CAAGETSYDKVIF TRAV13-1*01 TRAJ50*01 CASSLLGSQNTEAFF TRBV7-9*01 TRBJ1-1*01 HLA-B*08:01 B2M MHCI RAKFKQLL BZLF1 EBV PMID:34811538 tetramer-sort yes amplicon-seq effector T cells T1D T1D_5 chip0423_285258 PBMC +9298 CASSWTGSYEQYF TRBV6-2*01,TRBV6-3*01 TRBJ2-7*01 HLA-A*02:01 B2M MHCI YVLDHLIVV BRLF1 EBV PMID:34811538 tetramer-sort yes amplicon-seq effector memory T cells healthy healthy_4 chip0423_5244 PBMC +9299 CAVDMMDRGSTLGRLYF TRAV39*01 TRAJ18*01 CASSIYSSTDTQYF TRBV19*01 TRBJ2-3*01 HLA-A*02:01 B2M MHCI GILGFVFTL M1 InfluenzaA PMID:34811538 tetramer-sort yes amplicon-seq central memory T cells healthy healthy_3 chip0423_685053 PBMC +9300 CAGAWHFHKFYF TRAV27*01 TRAJ21*01 CASSVGGHAYEQYF TRBV9*01 TRBJ2-7*01 HLA-B*08:01 B2M MHCI FLRGRAYGL EBNA3A EBV PMID:34811538 tetramer-sort yes amplicon-seq Naive T cells T1D T1D_6 chip0423_511895 PBMC +9301 CAMMTTDSWGKLQF TRAV27*01 TRAJ24*01 CASSAAGTENIQYF TRBV28*01 TRBJ2-4*01 HLA-A*02:01 B2M MHCI FLGKIWPSYK GAG HIV-1 PMID:34811538 tetramer-sort yes amplicon-seq central memory T cells healthy healthy_3 chip0423_471470 PBMC +9302 CAYYWGaa?HRNQFYF TRAV38-1*01 TRAJ49*01 CASSFSGGAYEQYF TRBV5-1*01 TRBJ2-7*01 HLA-B*08:01 B2M MHCI RAKFKQLL BZLF1 EBV PMID:34811538 tetramer-sort yes amplicon-seq Naive T cells T1D T1D_6 chip0423_370457 PBMC +9303 CASSQGGga??caGGSPLHF TRBV4-1*01 TRBJ1-6*01 HLA-A*02:01 B2M MHCI LLAGIGTVPI PGT HomoSapiens PMID:34811538 tetramer-sort yes amplicon-seq Naive T cells T1D T1D_6 chip0423_76163 PBMC +9304 CARSTLTGGTGELFF TRBV6-1*01 TRBJ2-2*01 HLA-A*02:01 B2M MHCI LLAGIGTVPI PGT HomoSapiens PMID:34811538 tetramer-sort yes amplicon-seq Naive T cells healthy healthy_4 chip0423_860762 PBMC +9305 CASSPLGDRENSPLHF TRBV7-9*01 TRBJ1-6*01 HLA-B*08:01 B2M MHCI RAKFKQLL BZLF1 EBV PMID:34811538 tetramer-sort yes amplicon-seq transitional T cells between effector and memory populations healthy healthy_4 chip0423_694903 PBMC +9306 CAATGTASKLTF TRAV12-2*01 TRAJ44*01 HLA-A*02:01 B2M MHCI ALAGIGILTV MART1 HomoSapiens PMID:34811538 tetramer-sort yes amplicon-seq Naive T cells T1D T1D_4 chip0423_663004 PBMC +9307 CASSEMWGAPLHF TRBV2*01 TRBJ1-6*01 HLA-A*01:01 B2M MHCI CTELKLSDY NP InfluenzaA PMID:34811538 tetramer-sort yes amplicon-seq transitional T cells between effector and memory populations healthy healthy_3 chip0423_585788 PBMC +9309 CAALETSYDKVIF TRAV13-1*01 TRAJ50*01 CASSPPGQGNIQYF TRBV12-3*01,TRBV12-4*01 TRBJ2-4*01 HLA-B*08:01 B2M MHCI RAKFKQLL BZLF1 EBV PMID:34811538 tetramer-sort yes amplicon-seq effector memory T cells T1D T1D_5 chip0423_620869 PBMC +9310 CAAPLVAGNKLTF TRAV13-1*01 TRAJ17*01 CAWSGSSYEQYF TRBV30*01 TRBJ2-7*01 HLA-B*08:01 B2M MHCI MMIARFKM GAD2 HomoSapiens PMID:34811538 tetramer-sort yes amplicon-seq Naive T cells T1D T1D_5 chip0423_572086 PBMC +9311 CAVRDTTWADKIIF TRAV3*01 TRAJ30*01 CASSLGGGEGASEQFF TRBV7-6*01 TRBJ2-1*01 HLA-B*08:01 B2M MHCI FLRGRAYGL EBNA3A EBV PMID:34811538 tetramer-sort yes amplicon-seq effector memory T cells T1D T1D_4 chip0423_167105 PBMC +9312 CAMSLSNFGNEKLTF TRAV12-3*01 TRAJ48*01 CASSWITGGGSNQPQHF TRBV11-2*01 TRBJ1-5*01 HLA-A*02:01 B2M MHCI LLAGIGTVPI PGT HomoSapiens PMID:34811538 tetramer-sort yes amplicon-seq Naive T cells T1D T1D_4 chip0423_10305 PBMC +9313 CAMTLSNFGNEKLTF TRAV12-3*01 TRAJ48*01 CASSLAGGGVNEQFF TRBV7-6*01 TRBJ2-1*01 HLA-A*02:01 B2M MHCI LLAGIGTVPI PGT HomoSapiens PMID:34811538 tetramer-sort yes amplicon-seq Naive T cells T1D T1D_6 chip0423_762426 PBMC +9314 CASSMGGTYEQYF TRBV19*01 TRBJ2-7*01 HLA-A*02:01 B2M MHCI ALGIGILTV MART1 HomoSapiens PMID:34811538 tetramer-sort yes amplicon-seq Naive T cells healthy healthy_3 chip0423_660825 PBMC +9315 CPYNDLRF TRAV17*01 TRAJ43*01 HLA-A*01:01 B2M MHCI CLELAEYLY GAD2 HomoSapiens PMID:34811538 tetramer-sort yes amplicon-seq Naive T cells T1D T1D_5 chip0423_832916 PBMC +9316 CAAAETSYDKVIF TRAV13-1*01 TRAJ50*01 CASQLAGGTGELFF TRBV24-1*01 TRBJ2-2*01 HLA-B*08:01 B2M MHCI RAKFKQLL BZLF1 EBV PMID:34811538 tetramer-sort yes amplicon-seq effector memory T cells T1D T1D_5 chip0423_655463 PBMC +9317 CIVREGGGADGLTF TRAV26-1*01 TRAJ45*01 CASSLAVGEGPQHF TRBV7-9*01 TRBJ1-5*01 HLA-B*08:01 B2M MHCI RAKFKQLL BZLF1 EBV PMID:34811538 tetramer-sort yes amplicon-seq effector memory T cells T1D T1D_4 chip0423_616390 PBMC +9318 CAAAETSYDKVIF TRAV13-1*01 TRAJ50*01 HLA-B*08:01 B2M MHCI RAKFKQLL BZLF1 EBV PMID:34811538 tetramer-sort yes amplicon-seq effector T cells T1D T1D_5 chip0423_176162 PBMC +9319 CASSQEGQGAGELFF TRBV4-1*01 TRBJ2-2*01 HLA-A*01:01 B2M MHCI CTELKLSDY NP InfluenzaA PMID:34811538 tetramer-sort yes amplicon-seq transitional T cells between effector and memory populations healthy healthy_3 chip0423_567942 PBMC +9320 CASSFLTGAQSYEQYF TRBV5-6*01 TRBJ2-7*01 HLA-A*01:01 B2M MHCI STNVGSNTY IAPP HomoSapiens PMID:34811538 tetramer-sort yes amplicon-seq Naive T cells T1D T1D_6 chip0423_194779 PBMC +9324 CAAPKAGNMLTF TRAV13-1*01 TRAJ39*01 CASARDVSYEQYF TRBV25-1*01 TRBJ2-7*01 HLA-A*02:01 B2M MHCI LLSLFSLWL ZNT8 HomoSapiens PMID:34811538 tetramer-sort yes amplicon-seq Naive T cells healthy healthy_3 chip0423_85671 PBMC +9325 CALSSYSGGYQKVTF TRAV19*01 TRAJ13*01 CSAASYRDIDNYGYTF TRBV20-1*01 TRBJ1-2*01 HLA-A*01:01 B2M MHCI CTELKLSDY NP InfluenzaA PMID:34811538 tetramer-sort yes amplicon-seq central memory T cells healthy healthy_3 chip0423_750292 PBMC +9326 CARRGSGSARPLTF TRAV36/DV7*01 TRAJ22*01 HLA-A*01:01 B2M MHCI CTELKLSDY NP InfluenzaA PMID:34811538 tetramer-sort yes amplicon-seq transitional T cells between effector and memory populations healthy healthy_3 chip0423_588866 PBMC +9328 CADTNSGGYQKVTF TRAV1-1*01 TRAJ13*01 HLA-A*01:01 B2M MHCI CTELKLSDY NP InfluenzaA PMID:34811538 tetramer-sort yes amplicon-seq central memory T cells healthy healthy_3 chip0423_511457 PBMC +9329 CAVAGQLTF TRAV12-2*01 TRAJ22*01 CASSPGPLTNEKLFF TRBV10-2*01 TRBJ1-4*01 HLA-A*02:01 B2M MHCI LLAGIGTVPI PGT HomoSapiens PMID:34811538 tetramer-sort yes amplicon-seq Naive T cells T1D T1D_6 chip0423_209494 PBMC +9330 CAALETSYDKVIF TRAV13-1*01 TRAJ50*01 CASSPDGSTGELFF TRBV12-3*01,TRBV12-4*01 TRBJ2-2*01 HLA-B*08:01 B2M MHCI RAKFKQLL BZLF1 EBV PMID:34811538 tetramer-sort yes amplicon-seq effector memory T cells T1D T1D_5 chip0423_819597 PBMC +9331 CASSPLGSNEKLFF TRBV7-9*01 TRBJ1-4*01 HLA-B*08:01 B2M MHCI RAKFKQLL BZLF1 EBV PMID:34811538 tetramer-sort yes amplicon-seq effector memory T cells T1D T1D_5 chip0423_567899 PBMC +9332 CARVNSGRRHGNLIF TRAV19*01 TRAJ42*01 CAVWRDGAYEQYF TRBV28*01 TRBJ2-7*01 HLA-A*02:01 B2M MHCI YLLEMLWRL LMP1 EBV PMID:34811538 tetramer-sort yes amplicon-seq transitional T cells between effector and memory populations T1D T1D_4 chip0423_353920 PBMC +9333 CASRDPGGGYTF TRBV28*01 TRBJ1-2*01 HLA-B*08:01 B2M MHCI HARIKLKV PTPRN HomoSapiens PMID:34811538 tetramer-sort yes amplicon-seq Naive T cells T1D T1D_5 chip0423_2596 PBMC +9334 CASSPRAADTQYF TRBV19*01 TRBJ2-3*01 HLA-A*02:01 B2M MHCI GILGFVFTL M1 InfluenzaA PMID:34811538 tetramer-sort yes amplicon-seq transitional T cells between effector and memory populations T1D T1D_6 chip0423_568200 PBMC +9337 CALANYGGSQGNLIF TRAV24*01 TRAJ42*01 CASSEEDGPQHF TRBV9*01 TRBJ1-5*01 HLA-A*01:01 B2M MHCI CTELKLSDY NP InfluenzaA PMID:34811538 tetramer-sort yes amplicon-seq transitional T cells between effector and memory populations healthy healthy_3 chip0423_410916 PBMC +9338 CASCRDGTYEQYF TRBV10-3*01 TRBJ2-7*01 HLA-A*01:01 B2M MHCI CTELKLSDY NP InfluenzaA PMID:34811538 tetramer-sort yes amplicon-seq transitional T cells between effector and memory populations healthy healthy_3 chip0423_658343 PBMC +9339 CASSDPRTGVQPQRC TRBV6-1*01 TRBJ1-5*01 HLA-A*02:01 B2M MHCI LLAGIGTVPI PGT HomoSapiens PMID:34811538 tetramer-sort yes amplicon-seq Naive T cells healthy healthy_3 chip0423_621564 PBMC +9340 CASSPPGRNEKLFF TRBV12-3*01,TRBV12-4*01 TRBJ1-4*01 HLA-B*08:01 B2M MHCI RAKFKQLL BZLF1 EBV PMID:34811538 tetramer-sort yes amplicon-seq effector T cells T1D T1D_5 chip0423_872729 PBMC +9341 CAMSISNFGNEKLTF TRAV12-3*01 TRAJ48*01 CASRGSGTDMNTEAFF TRBV5-1*01 TRBJ1-1*01 HLA-A*02:01 B2M MHCI LLAGIGTVPI PGT HomoSapiens PMID:34811538 tetramer-sort yes amplicon-seq Naive T cells healthy healthy_3 chip0423_786272 PBMC +9342 FAVG*Ltg??gaNEILTF TRAV41*01 TRAJ48*01 CASSFQGGNEKLFF TRBV12-3*01,TRBV12-4*01 TRBJ1-4*01 HLA-B*08:01 B2M MHCI RAKFKQLL BZLF1 EBV PMID:34811538 tetramer-sort yes amplicon-seq transitional T cells between effector and memory populations healthy healthy_5 chip0423_653395 PBMC +9343 CASSLIAGVYYNEQFF TRBV27*01 TRBJ2-1*01 HLA-B*08:01 B2M MHCI QAKWRLQTL EBNA3A EBV PMID:34811538 tetramer-sort yes amplicon-seq effector memory T cells healthy healthy_4 chip0423_432080 PBMC +9344 CASSVVPGENEKLFF TRBV9*01 TRBJ1-4*01 HLA-B*08:01 B2M MHCI RAKFKQLL BZLF1 EBV PMID:34811538 tetramer-sort yes amplicon-seq effector memory T cells T1D T1D_4 chip0423_298085 PBMC +9345 LCQQPSQca??acPGDGYTF TRBV14*01 TRBJ1-2*01 HLA-B*08:01 B2M MHCI QAKWRLQTL EBNA3A EBV PMID:34811538 tetramer-sort yes amplicon-seq effector memory T cells T1D T1D_4 chip0423_288781 PBMC +9346 CAGGSALAAQYF TRBV6-5*01 TRBJ2-7*01 HLA-A*02:01 B2M MHCI FLYALALLL LMP2 EBV PMID:34811538 tetramer-sort yes amplicon-seq effector memory T cells healthy healthy_3 chip0423_200881 PBMC +9347 CAEMETSYDKVIF TRAV13-2*01 TRAJ50*01 CASSSLSGGAGNEQFF TRBV7-9*01 TRBJ2-1*01 HLA-B*08:01 B2M MHCI RAKFKQLL BZLF1 EBV PMID:34811538 tetramer-sort yes amplicon-seq effector memory T cells T1D T1D_5 chip0423_545332 PBMC +9348 CALSDRSAGGTSYGKLTF TRAV9-2*01 TRAJ52*01 CASSLRVEETQYF TRBV28*01 TRBJ2-5*01 HLA-B*08:01 B2M MHCI LRLRLDQL GFAP HomoSapiens PMID:34811538 tetramer-sort yes amplicon-seq Naive T cells T1D T1D_6 chip0423_113335 PBMC +9349 *AGARWPNNEGNMLTF TRAV27*01 TRAJ39*01 CARGSGgt??tcQETQYF TRBV4-3*01 TRBJ2-5*01 HLA-A*02:01 B2M MHCI YLLEMLWRL LMP1 EBV PMID:34811538 tetramer-sort yes amplicon-seq effector memory T cells healthy healthy_4 chip0423_22532 PBMC +9350 GALMFFG??gGFFQLFF TRAV19*01 TRAJ4*01 CAGRALWGAPLHF TRBV2*01 TRBJ1-6*01 HLA-A*01:01 B2M MHCI CTELKLSDY NP InfluenzaA PMID:34811538 tetramer-sort yes amplicon-seq transitional T cells between effector and memory populations healthy healthy_3 chip0423_453678 PBMC +9351 CILPLAGGPSYGKLTF TRAV26-2*01 TRAJ52*01 CASSLGQAYEQYF TRBV7-8*01 TRBJ2-7*01 HLA-B*08:01 B2M MHCI FLRGRAYGL EBNA3A EBV PMID:34811538 tetramer-sort yes amplicon-seq effector memory T cells T1D T1D_6 chip0423_882066 PBMC +9353 CAVNDFMNTGFQKLVI TRAV12-2*01 TRAJ8*01 CASGPTGVQPQHF TRBV28*01 TRBJ1-5*01 HLA-A*02:01 B2M MHCI ALAGIGILTV MART1 HomoSapiens PMID:34811538 tetramer-sort yes amplicon-seq Naive T cells T1D T1D_4 chip0423_173267 PBMC +9354 CAISEIGHNQPQHF TRBV10-3*01 TRBJ1-5*01 HLA-B*08:01 B2M MHCI ILKLQVFL IAPP HomoSapiens PMID:34811538 tetramer-sort yes amplicon-seq Naive T cells T1D T1D_5 chip0423_685540 PBMC +9355 CASSLAVGEGPQHF TRBV7-9*01 TRBJ1-5*01 HLA-B*08:01 B2M MHCI RAKFKQLL BZLF1 EBV PMID:34811538 tetramer-sort yes amplicon-seq effector memory T cells T1D T1D_4 chip0423_568782 PBMC +9356 CASSRIPGPGARPDPNTGELFF TRBV28*01 TRBJ2-2*01 HLA-A*02:01 B2M MHCI CLGGLLTMV LMP2A EBV PMID:34811538 tetramer-sort yes amplicon-seq effector memory T cells T1D T1D_4 chip0423_873752 PBMC +9357 CILPLAGGTSYGKLTF TRAV26-2*01 TRAJ52*01 CASSSGQAYEQYF TRBV7-8*01 TRBJ2-7*01 HLA-B*08:01 B2M MHCI FLRGRAYGL EBNA3A EBV PMID:34811538 tetramer-sort yes amplicon-seq effector memory T cells healthy healthy_4 chip0423_401760 PBMC +9358 CASSYWGPTDTQYF TRBV6-5*01 TRBJ2-3*01 HLA-A*01:01 B2M MHCI LTSLTILQLY G6PC2 HomoSapiens PMID:34811538 tetramer-sort yes amplicon-seq Naive T cells T1D T1D_6 chip0423_780627 PBMC +9359 CASSLQGGNIQYF TRBV6-1*01 TRBJ2-4*01 HLA-A*02:01 B2M MHCI FLYALALLL LMP2 EBV PMID:34811538 tetramer-sort yes amplicon-seq central memory T cells T1D T1D_4 chip0423_707082 PBMC +9360 CAVTGFQKLVF TRAV12-2*01 TRAJ8*01 CASSQVNNPGDGYTF TRBV14*01 TRBJ1-2*01 HLA-A*02:01 B2M MHCI LLAGIGTVPI PGT HomoSapiens PMID:34811538 tetramer-sort yes amplicon-seq Naive T cells T1D T1D_4 chip0423_352225 PBMC +9361 CAWRYDGEAFF TRBV30*01 TRBJ1-1*01 HLA-B*08:01 B2M MHCI ELRSRYWAI NP InfluenzaA PMID:34811538 tetramer-sort yes amplicon-seq Naive T cells T1D T1D_4 chip0423_486576 PBMC +9362 CAEKRTGTGRRALTF TRAV13-2*01 TRAJ5*01 CASSPPTGSGEQYF TRBV27*01 TRBJ2-7*01 HLA-A*02:01 B2M MHCI LLAGIGTVPI PGT HomoSapiens PMID:34811538 tetramer-sort yes amplicon-seq Naive T cells healthy healthy_3 chip0423_223358 PBMC +9363 CAFEVDSNYQLIW TRAV24*01 TRAJ33*01 CASAPALFVGPYEQYF TRBV28*01 TRBJ2-7*01 HLA-A*02:01 B2M MHCI ALAGIGILTV MART1 HomoSapiens PMID:34811538 tetramer-sort yes amplicon-seq Naive T cells healthy healthy_3 chip0423_183913 PBMC +9364 CASSPPGRNEKLFF TRBV12-3*01,TRBV12-4*01 TRBJ1-4*01 HLA-B*08:01 B2M MHCI RAKFKQLL BZLF1 EBV PMID:34811538 tetramer-sort yes amplicon-seq effector T cells T1D T1D_5 chip0423_870116 PBMC +9365 CASSVGWTGTGETQYF TRBV9*01 TRBJ2-5*01 HLA-A*02:01 B2M MHCI GILGFVFTL M1 InfluenzaA PMID:34811538 tetramer-sort yes amplicon-seq central memory T cells healthy healthy_4 chip0423_747658 PBMC +9366 CAVKDTDKLIF TRAV8-1*01 TRAJ34*01 CASSLYSAEQHF TRBV28*01 TRBJ2-7*01 HLA-A*02:01 B2M MHCI YVLDHLIVV BRLF1 EBV PMID:34811538 tetramer-sort yes amplicon-seq effector memory T cells healthy healthy_3 chip0423_533962 PBMC +9367 CAMSLSNFGNEKLTF TRAV12-3*01 TRAJ48*01 CAWSEVPEAFF TRBV30*01 TRBJ1-1*01 HLA-A*02:01 B2M MHCI LLAGIGTVPI PGT HomoSapiens PMID:34811538 tetramer-sort yes amplicon-seq Naive T cells T1D T1D_4 chip0423_471795 PBMC +9368 CILPLAGGTSYGKLTF TRAV26-2*01 TRAJ52*01 CASSLGQAYEQYF TRBV7-8*01 TRBJ2-7*01 HLA-B*08:01 B2M MHCI FLRGRAYGL EBNA3A EBV PMID:34811538 tetramer-sort yes amplicon-seq effector T cells T1D T1D_6 chip0423_375407 PBMC +9369 CASSSLGTGSQAFF TRAV36/DV7*01 TRAJ40*01 CASSSLGTGSQAFF TRBV7-9*01 TRBJ1-1*01 HLA-B*08:01 B2M MHCI RAKFKQLL BZLF1 EBV PMID:34811538 tetramer-sort yes amplicon-seq effector memory T cells T1D T1D_5 chip0423_118521 PBMC +9370 CVVSPSNFGNEKLTF TRAV12-1*01 TRAJ48*01 HLA-A*02:01 B2M MHCI LLAGIGTVPI PGT HomoSapiens PMID:34811538 tetramer-sort yes amplicon-seq Naive T cells healthy healthy_4 chip0423_369194 PBMC +9372 CASSESGTTETQYF TRBV25-1*01 TRBJ2-5*01 HLA-A*02:01 B2M MHCI LLAGIGTVPI PGT HomoSapiens PMID:34811538 tetramer-sort yes amplicon-seq Naive T cells healthy healthy_4 chip0423_392791 PBMC +9373 CASCRDGTYEQYF TRBV10-3*01 TRBJ2-7*01 HLA-A*01:01 B2M MHCI CTELKLSDY NP InfluenzaA PMID:34811538 tetramer-sort yes amplicon-seq effector T cells healthy healthy_3 chip0423_856397 PBMC +9374 CASSQEGQGAGELFF TRBV4-1*01 TRBJ2-2*01 HLA-A*01:01 B2M MHCI CTELKLSDY NP InfluenzaA PMID:34811538 tetramer-sort yes amplicon-seq transitional T cells between effector and memory populations healthy healthy_3 chip0423_582380 PBMC +9376 CASSDIREGQGEAFF TRBV10-2*01 TRBJ1-1*01 HLA-B*08:01 B2M MHCI QAKWRLQTL EBNA3A EBV PMID:34811538 tetramer-sort yes amplicon-seq transitional T cells between effector and memory populations T1D T1D_6 chip0423_380748 PBMC +9377 CAVDIPDSGGGAVGLTF TRAV39*01 TRAJ45*01 CASSPLGTPNTEAFF TRBV18*01 TRBJ1-1*01 HLA-A*02:01 B2M MHCI RLLPLLALL PREINS HomoSapiens PMID:34811538 tetramer-sort yes amplicon-seq Naive T cells healthy healthy_4 chip0423_278476 PBMC +9378 CADPQAGTALIF TRAV5*01 TRAJ15*01 CASSQFSGGNEQFF TRBV4-1*01 TRBJ2-1*01 HLA-A*02:01 B2M MHCI GLCTLVAML BLMF1 EBV PMID:34811538 tetramer-sort yes amplicon-seq Naive T cells T1D T1D_6 chip0423_239282 PBMC +9379 CASSQPGRTDEQYF TRBV12-3*01,TRBV12-4*01 TRBJ2-7*01 HLA-A*02:01 B2M MHCI LLIDLTSFL ZNT8 HomoSapiens PMID:34811538 tetramer-sort yes amplicon-seq central memory T cells healthy healthy_3 chip0423_159438 PBMC +9380 CASSLTVLAGPNTEAFF TRBV7-3*01 TRBJ1-1*01 HLA-B*08:01 B2M MHCI RAKFKQLL BZLF1 EBV PMID:34811538 tetramer-sort yes amplicon-seq effector memory T cells T1D T1D_4 chip0423_834054 PBMC +9381 CASSMVGSGYNEQFF TRBV19*01 TRBJ2-1*01 HLA-A*02:01 B2M MHCI GILGFVFTL M1 InfluenzaA PMID:34811538 tetramer-sort yes amplicon-seq central memory T cells healthy healthy_4 chip0423_32348 PBMC +9382 CILPLAGGTSYGKLTF TRAV26-2*01 TRAJ52*01 CASSLGPAYEQYF TRBV7-8*01 TRBJ2-7*01 HLA-B*08:01 B2M MHCI FLRGRAYGL EBNA3A EBV PMID:34811538 tetramer-sort yes amplicon-seq transitional T cells between effector and memory populations T1D T1D_4 chip0423_645906 PBMC +9383 CADYSSASKIIF TRAV1-1*01 TRAJ3*01 CASSQDGLAATSTETQYF TRBV4-1*01 TRBJ2-3*01 HLA-A*01:01 B2M MHCI CTELKLSDY NP InfluenzaA PMID:34811538 tetramer-sort yes amplicon-seq transitional T cells between effector and memory populations healthy healthy_3 chip0423_633942 PBMC +9384 CAAGKPc?cYDKVIF TRAV13-1*01 TRAJ50*01 CASQLAGGTGELFF TRBV24-1*01 TRBJ2-2*01 HLA-B*08:01 B2M MHCI RAKFKQLL BZLF1 EBV PMID:34811538 tetramer-sort yes amplicon-seq effector memory T cells T1D T1D_5 chip0423_625136 PBMC +9385 CAATLYDKIIF TRAV29/DV5*01 TRAJ30*01 CASGWGLGPTYEQ*F TRBV4-1*01 TRBJ2-7*01 HLA-B*08:01 B2M MHCI RAKFKQLL BZLF1 EBV PMID:34811538 tetramer-sort yes amplicon-seq effector memory T cells healthy healthy_4 chip0423_77663 PBMC +9386 CAERRDHKASGGSYIPTF TRAV5*01 TRAJ6*01 CDTSGAGASSDTQYC TRBV24-1*01 TRBJ2-3*01 HLA-A*02:01 B2M MHCI KMYAFTLES ZNT8 HomoSapiens PMID:34811538 tetramer-sort yes amplicon-seq Naive T cells T1D T1D_6 chip0423_809875 PBMC +9387 CSVVEEKLFF TRBV29-1*01 TRBJ1-4*01 HLA-B*08:01 B2M MHCI ILKLQVFL IAPP HomoSapiens PMID:34811538 tetramer-sort yes amplicon-seq Naive T cells T1D T1D_5 chip0423_785094 PBMC +9388 CAVKGGYNKLIF TRAV12-2*01 TRAJ4*01 HLA-A*02:01 B2M MHCI LLAGIGTVPI PGT HomoSapiens PMID:34811538 tetramer-sort yes amplicon-seq Naive T cells T1D T1D_4 chip0423_704973 PBMC +9390 CILPLAGGTSYGKLTF TRAV26-2*01 TRAJ52*01 CASSLAVGEGPQHF TRBV7-9*01 TRBJ1-5*01 HLA-B*08:01 B2M MHCI RAKFKQLL BZLF1 EBV PMID:34811538 tetramer-sort yes amplicon-seq effector T cells T1D T1D_4 chip0423_473024 PBMC +9391 CAMRAIEGANNLFF TRAV14/DV4*01 TRAJ36*01 CASSLSSGGRGEQYF TRBV4-1*01 TRBJ2-7*01 HLA-B*08:01 B2M MHCI RAKFKQLL BZLF1 EBV PMID:34811538 tetramer-sort yes amplicon-seq effector memory T cells T1D T1D_5 chip0423_737954 PBMC +9392 CAGRATSYDKVIF TRAV13-1*01 TRAJ50*01 CASSVSGAPYEQYF TRBV9*01 TRBJ2-7*01 HLA-B*08:01 B2M MHCI FLRGRAYGL EBNA3A EBV PMID:34811538 tetramer-sort yes amplicon-seq effector memory T cells T1D T1D_6 chip0423_604345 PBMC +9393 CAMTLSNFGNEKLTF TRAV12-3*01 TRAJ48*01 CASRGAPTNEKLFL TRBV6-1*01 TRBJ1-4*01 HLA-A*02:01 B2M MHCI LLAGIGTVPI PGT HomoSapiens PMID:34811538 tetramer-sort yes amplicon-seq transitional T cells between effector and memory populations T1D T1D_6 chip0423_174527 PBMC +9395 CILPLAGGTSYGKLTF TRAV26-2*01 TRAJ52*01 CASSLGQAYEQYF TRBV7-8*01 TRBJ2-7*01 HLA-B*08:01 B2M MHCI FLRGRAYGL EBNA3A EBV PMID:34811538 tetramer-sort yes amplicon-seq effector memory T cells T1D T1D_6 chip0423_569773 PBMC +9396 CILPLAGGTSYGKLTF TRAV26-2*01 TRAJ52*01 CASSLGQAYEQYF TRBV7-8*01 TRBJ2-7*01 HLA-B*08:01 B2M MHCI FLRGRAYGL EBNA3A EBV PMID:34811538 tetramer-sort yes amplicon-seq transitional T cells between effector and memory populations T1D T1D_4 chip0423_378759 PBMC +9397 CAMSISNFGNEKLTF TRAV12-3*01 TRAJ48*01 CASSLVRGDDTEAFF TRBV28*01 TRBJ1-1*01 HLA-A*02:01 B2M MHCI LLAGIGTVPI PGT HomoSapiens PMID:34811538 tetramer-sort yes amplicon-seq Naive T cells T1D T1D_6 chip0423_344378 PBMC +9398 CASRTGTSPLHF TRAV24*01 TRAJ11*01 CASRTGTSPLHF TRBV28*01 TRBJ1-6*01 HLA-A*02:01 B2M MHCI VVTGVLVYL ZNT8 HomoSapiens PMID:34811538 tetramer-sort yes amplicon-seq transitional T cells between effector and memory populations healthy healthy_4 chip0423_296570 PBMC +9399 CSVGTGGTNEKLFF TRBV29-1*01 TRBJ1-4*01 HLA-A*02:01 B2M MHCI GLCTLVAML BLMF1 EBV PMID:34811538 tetramer-sort yes amplicon-seq effector T cells T1D T1D_4 chip0423_288519 PBMC +9400 CAMRERKARGLKTFF TRAV14/DV4*01 TRAJ9*01 CASSPTTARTGNGYTF TRBV3-1*01 TRBJ1-2*01 HLA-B*08:01 B2M MHCI RAKFKQLL BZLF1 EBV PMID:34811538 tetramer-sort yes amplicon-seq effector memory T cells T1D T1D_5 chip0423_175445 PBMC +9401 CAVRVQ??tNNDMRF TRAV20*01 TRAJ43*01 CASSEVASYGYTF TRBV25-1*01 TRBJ1-2*01 HLA-A*02:01 B2M MHCI VAANIVLTV ZNT8 HomoSapiens PMID:34811538 tetramer-sort yes amplicon-seq Naive T cells T1D T1D_4 chip0423_104088 PBMC +9402 CVVNGENAGLMF TRAV12-1*01 TRAJ31*01 CASSEMWGAPLHF TRBV2*01 TRBJ1-6*01 HLA-A*01:01 B2M MHCI CTELKLSDY NP InfluenzaA PMID:34811538 tetramer-sort yes amplicon-seq transitional T cells between effector and memory populations healthy healthy_3 chip0423_259055 PBMC +9403 CASSQAVSTYEQYF TRBV4-2*01 TRBJ2-7*01 HLA-B*08:01 B2M MHCI QAKWRLQTL EBNA3A EBV PMID:34811538 tetramer-sort yes amplicon-seq Naive T cells T1D T1D_5 chip0423_752983 PBMC +9404 CASSEAGGQSSYNEQFF TRBV11-1*01 TRBJ2-1*01 HLA-A*01:01 B2M MHCI CTELKLSDY NP InfluenzaA PMID:34811538 tetramer-sort yes amplicon-seq Naive T cells healthy healthy_5 chip0423_589921 PBMC +9405 CASSPGVGYTF TRBV5-8*01 TRBJ1-2*01 HLA-A*01:01 B2M MHCI HSNLNDATY NP InfluenzaA PMID:34811538 tetramer-sort yes amplicon-seq Naive T cells T1D T1D_4 chip0423_412646 PBMC +9406 CASSSGLAHPGNEQFF TRBV12-3*01,TRBV12-4*01 TRBJ2-1*01 HLA-A*02:01 B2M MHCI LLAGIGTVPI PGT HomoSapiens PMID:34811538 tetramer-sort yes amplicon-seq Naive T cells healthy healthy_3 chip0423_599350 PBMC +9408 CAAGALga?ATSTLTF TRAV8-3*01 TRAJ56*01 CAVWRDGAYEQYF TRBV28*01 TRBJ2-7*01 HLA-A*02:01 B2M MHCI YLLEMLWRL LMP1 EBV PMID:34811538 tetramer-sort yes amplicon-seq effector memory T cells T1D T1D_4 chip0423_783971 PBMC +9409 CAMSLSNFGNEKLTF TRAV12-3*01 TRAJ48*01 HLA-A*02:01 B2M MHCI LLAGIGTVPI PGT HomoSapiens PMID:34811538 tetramer-sort yes amplicon-seq Naive T cells T1D T1D_6 chip0423_229111 PBMC +9410 CASSFSQGWTEAFF TRBV6-5*01 TRBJ1-1*01 HLA-A*02:01 B2M MHCI LLAGIGTVPI PGT HomoSapiens PMID:34811538 tetramer-sort yes amplicon-seq Naive T cells healthy healthy_3 chip0423_45943 PBMC +9411 CASSQLGEAKEGTEAFF TRBV11-1*01 TRBJ1-1*01 HLA-B*08:01 B2M MHCI RAKFKQLL BZLF1 EBV PMID:34811538 tetramer-sort yes amplicon-seq transitional T cells between effector and memory populations T1D T1D_5 chip0423_425206 PBMC +9412 CASSSGQAYEQYF TRBV7-8*01 TRBJ2-7*01 HLA-B*08:01 B2M MHCI FLRGRAYGL EBNA3A EBV PMID:34811538 tetramer-sort yes amplicon-seq effector T cells healthy healthy_4 chip0423_286478 PBMC +9413 CALSSYSGGYQKVTF TRAV19*01 TRAJ13*01 CSADSYRDIDNYGYTF TRBV20-1*01 TRBJ1-2*01 HLA-A*01:01 B2M MHCI CTELKLSDY NP InfluenzaA PMID:34811538 tetramer-sort yes amplicon-seq transitional T cells between effector and memory populations healthy healthy_3 chip0423_861310 PBMC +9414 CAVSDGEGAQKLVF TRAV8-6*01 TRAJ54*01 CASSLTVLAGPNTEAFF TRBV7-3*01 TRBJ1-1*01 HLA-B*08:01 B2M MHCI RAKFKQLL BZLF1 EBV PMID:34811538 tetramer-sort yes amplicon-seq effector memory T cells T1D T1D_4 chip0423_656650 PBMC +9415 CASSEALRGQGNQPQHF TRBV2*01 TRBJ1-5*01 HLA-B*08:01 B2M MHCI HLKRNIVV GFAP HomoSapiens PMID:34811538 tetramer-sort yes amplicon-seq Naive T cells T1D T1D_5 chip0423_538246 PBMC +9416 CILPLAGGTSYGKLTF TRAV26-2*01 TRAJ52*01 HLA-B*08:01 B2M MHCI FLRGRAYGL EBNA3A EBV PMID:34811538 tetramer-sort yes amplicon-seq transitional T cells between effector and memory populations T1D T1D_4 chip0423_351608 PBMC +9417 CAVSDGEGAQKLVF TRAV8-6*01 TRAJ54*01 HLA-B*08:01 B2M MHCI RAKFKQLL BZLF1 EBV PMID:34811538 tetramer-sort yes amplicon-seq effector memory T cells T1D T1D_4 chip0423_334845 PBMC +9418 CASSILVGGSDEQYF TRBV5-6*01 TRBJ2-7*01 HLA-B*08:01 B2M MHCI RAKFKQLL BZLF1 EBV PMID:34811538 tetramer-sort yes amplicon-seq effector memory T cells T1D T1D_5 chip0423_191465 PBMC +9419 CAESTGTLIF TRAV5*01 TRAJ37*01 HLA-A*02:01 B2M MHCI YLLEMLWRL LMP1 EBV PMID:34811538 tetramer-sort yes amplicon-seq effector memory T cells T1D T1D_4 chip0423_536674 PBMC +9422 CASGGKLIF TRAV12-2*01 TRAJ23*01 CATSDLDRGLDTQYF TRBV24-1*01 TRBJ2-3*01 HLA-A*02:01 B2M MHCI LLAGIGTVPI PGT HomoSapiens PMID:34811538 tetramer-sort yes amplicon-seq Naive T cells T1D T1D_4 chip0423_336962 PBMC +9423 CASSQEGGGGYEQYF TRBV4-2*01 TRBJ2-7*01 HLA-A*02:01 B2M MHCI YLQQNWWTL LMP1 EBV PMID:34811538 tetramer-sort yes amplicon-seq central memory T cells healthy healthy_3 chip0423_237216 PBMC +9424 CSAGTSSQVREETQYV TRBV20-1*01 TRBJ2-5*01 HLA-A*02:01 B2M MHCI LLAGIGTVPI PGT HomoSapiens PMID:34811538 tetramer-sort yes amplicon-seq Naive T cells T1D T1D_6 chip0423_871741 PBMC +9425 CAATETSYDKVIF TRAV13-1*01 TRAJ50*01 CASSPPGRNEKLFF TRBV12-3*01,TRBV12-4*01 TRBJ1-4*01 HLA-B*08:01 B2M MHCI RAKFKQLL BZLF1 EBV PMID:34811538 tetramer-sort yes amplicon-seq effector T cells T1D T1D_5 chip0423_720594 PBMC +9426 CAVEDQGRSYNTDKLIF TRAV2*01 TRAJ34*01 CASSLNVGEGAGNTIYF TRBV7-6*01 TRBJ1-3*01 HLA-B*08:01 B2M MHCI RAKFKQLL BZLF1 EBV PMID:34811538 tetramer-sort yes amplicon-seq effector memory T cells healthy healthy_4 chip0423_496754 PBMC +9427 CAATETSYDKVIF TRAV13-1*01 TRAJ50*01 CASSPPGRNEKLFF TRBV12-3*01,TRBV12-4*01 TRBJ1-4*01 HLA-B*08:01 B2M MHCI RAKFKQLL BZLF1 EBV PMID:34811538 tetramer-sort yes amplicon-seq effector T cells T1D T1D_5 chip0423_51771 PBMC +9428 CTSSLAVGAGPQHF TRBV7-9*01 TRBJ1-5*01 HLA-B*08:01 B2M MHCI RAKFKQLL BZLF1 EBV PMID:34811538 tetramer-sort yes amplicon-seq effector memory T cells T1D T1D_4 chip0423_50790 PBMC +9429 CAALLWR??aSQGNLIF TRAV25*01 TRAJ42*01 HLA-A*01:01 B2M MHCI CTELKLSDY NP InfluenzaA PMID:34811538 tetramer-sort yes amplicon-seq transitional T cells between effector and memory populations healthy healthy_3 chip0423_639442 PBMC +9430 CAFMNLQGGSEKLVF TRAV38-1*01 TRAJ57*01 CASNFPAANSYEQYF TRBV6-1*01 TRBJ2-7*01 HLA-A*02:01 B2M MHCI CINGVCWTV NS3 HCV PMID:34811538 tetramer-sort yes amplicon-seq Naive T cells healthy healthy_3 chip0423_439098 PBMC +9431 CAVYSNDYKLSF TRAV12-2*01 TRAJ20*01 CASTQGGYGYTF TRBV2*01 TRBJ1-2*01 HLA-B*08:01 B2M MHCI ALKCKGFHV NP InfluenzaA PMID:34811538 tetramer-sort yes amplicon-seq Naive T cells T1D T1D_5 chip0423_860058 PBMC +9432 CSAISRDSPLLLYGYTF TRBV20-1*01 TRBJ1-2*01 HLA-A*02:01 B2M MHCI LLFNILGGWV NS4B HCV PMID:34811538 tetramer-sort yes amplicon-seq Naive T cells T1D T1D_6 chip0423_479377 PBMC +9433 CILPLAGGTSYGKLTF TRAV26-2*01 TRAJ52*01 CASSLGQAYEQYF TRBV7-8*01 TRBJ2-7*01 HLA-B*08:01 B2M MHCI FLRGRAYGL EBNA3A EBV PMID:34811538 tetramer-sort yes amplicon-seq effector memory T cells T1D T1D_6 chip0423_410585 PBMC +9434 CAASETSYDKVIF TRAV13-1*01 TRAJ50*01 CASSRLGGETGELFF TRBV7-2*01 TRBJ2-2*01 HLA-B*08:01 B2M MHCI RAKFKQLL BZLF1 EBV PMID:34811538 tetramer-sort yes amplicon-seq effector memory T cells T1D T1D_5 chip0423_580365 PBMC +9435 CASSRVRGRNTEAFF TRAV36/DV7*01 TRAJ40*01 CASSRVRGRNTEAFF TRBV7-9*01 TRBJ1-1*01 HLA-B*08:01 B2M MHCI YLKDQQLL gp160 HIV-1 PMID:34811538 tetramer-sort yes amplicon-seq Naive T cells T1D T1D_4 chip0423_266882 PBMC +9436 CATGVDFGGTQRNLIF TRAV12-3*01 TRAJ42*01 CASSLDTSYEQYF TRBV12-3*01,TRBV12-4*01 TRBJ2-7*01 HLA-B*08:01 B2M MHCI EVLKREPL IAPP HomoSapiens PMID:34811538 tetramer-sort yes amplicon-seq Naive T cells T1D T1D_6 chip0423_768342 PBMC +9437 CASSLRGLNSPLHF TRBV9*01 TRBJ1-6*01 HLA-B*08:01 B2M MHCI EAKQKGFVPF GAD2 HomoSapiens PMID:34811538 tetramer-sort yes amplicon-seq Naive T cells T1D T1D_5 chip0423_407539 PBMC +9438 CAVHQTGANNLFL TRAV12-2*01 TRAJ36*01 CASSPGGGGQPQHF TRBV4-1*01 TRBJ1-5*01 HLA-A*02:01 B2M MHCI ALAGIGILTV MART1 HomoSapiens PMID:34811538 tetramer-sort yes amplicon-seq Naive T cells T1D T1D_4 chip0423_376001 PBMC +9439 CASSLSSGGRGEQYF TRBV4-1*01 TRBJ2-7*01 HLA-B*08:01 B2M MHCI RAKFKQLL BZLF1 EBV PMID:34811538 tetramer-sort yes amplicon-seq effector T cells T1D T1D_5 chip0423_318363 PBMC +9440 CASSQMSDTQYF TRBV6-2*01,TRBV6-3*01 TRBJ2-3*01 HLA-A*02:01 B2M MHCI YVLDHLIVV BRLF1 EBV PMID:34811538 tetramer-sort yes amplicon-seq effector memory T cells healthy healthy_3 chip0423_141260 PBMC +9441 CAVNPNSGNTPLVF TRAV12-2*01 TRAJ29*01 CASSPLAGQLAKNIQYF TRBV12-3*01,TRBV12-4*01 TRBJ2-4*01 HLA-A*02:01 B2M MHCI ALAGIGILTV MART1 HomoSapiens PMID:34811538 tetramer-sort yes amplicon-seq Naive T cells T1D T1D_4 chip0423_121004 PBMC +9442 CASSLTVLAGPNTEAFF TRBV7-3*01 TRBJ1-1*01 HLA-B*08:01 B2M MHCI RAKFKQLL BZLF1 EBV PMID:34811538 tetramer-sort yes amplicon-seq effector memory T cells T1D T1D_4 chip0423_5977 PBMC +9443 CASSQATSYGYTF TRBV4-1*01 TRBJ1-2*01 HLA-A*02:01 B2M MHCI LLAGIGTVPI PGT HomoSapiens PMID:34811538 tetramer-sort yes amplicon-seq Naive T cells T1D T1D_4 chip0423_755385 PBMC +9444 CALSVGNTDKLIF TRAV19*01 TRAJ34*01 CASSLGAVAFF TRBV5-4*01 TRBJ1-1*01 HLA-A*01:01 B2M MHCI CTELKLSDY NP InfluenzaA PMID:34811538 tetramer-sort yes amplicon-seq Naive T cells T1D T1D_4 chip0423_353125 PBMC +9445 CAARTSYDKVIF TRAV13-1*01 TRAJ50*01 CASSPGTSPLHF TRBV4-2*01 TRBJ1-6*01 HLA-A*02:01 B2M MHCI NLAQDLATV GFAP HomoSapiens PMID:34811538 tetramer-sort yes amplicon-seq central memory T cells T1D T1D_4 chip0423_308534 PBMC +9446 CILRDSLGGTSYGKLTF TRAV26-2*01 TRAJ52*01 HLA-B*08:01 B2M MHCI FLRGRAYGL EBNA3A EBV PMID:34811538 tetramer-sort yes amplicon-seq transitional T cells between effector and memory populations T1D T1D_4 chip0423_20094 PBMC +9447 CASTGTSDSTDTQYF TRBV2*01 TRBJ2-3*01 HLA-A*01:01 B2M MHCI CTELKLSDY NP InfluenzaA PMID:34811538 tetramer-sort yes amplicon-seq transitional T cells between effector and memory populations healthy healthy_3 chip0423_705392 PBMC +9448 CAMSRSNFGNEKLTF TRAV12-3*01 TRAJ48*01 CASSSSQRDTGELFF TRBV12-3*01,TRBV12-4*01 TRBJ2-2*01 HLA-A*02:01 B2M MHCI LLAGIGTVPI PGT HomoSapiens PMID:34811538 tetramer-sort yes amplicon-seq Naive T cells T1D T1D_6 chip0423_376660 PBMC +9449 CSVGAGGTNEKLFF TRBV29-1*01 TRBJ1-4*01 HLA-A*02:01 B2M MHCI GLCTLVAML BLMF1 EBV PMID:34811538 tetramer-sort yes amplicon-seq transitional T cells between effector and memory populations healthy healthy_4 chip0423_499672 PBMC +9450 CASYNKRTVTGELFF TRBV19*01 TRBJ2-2*01 HLA-B*08:01 B2M MHCI MGILKLQVF IAPP HomoSapiens PMID:34811538 tetramer-sort yes amplicon-seq Naive T cells T1D T1D_5 chip0423_317802 PBMC +9451 CAMSRSNFGNEKLTF TRAV12-3*01 TRAJ48*01 CASSQDSRGTTGSNYGYTF TRBV4-1*01 TRBJ1-2*01 HLA-A*02:01 B2M MHCI LLAGIGTVPI PGT HomoSapiens PMID:34811538 tetramer-sort yes amplicon-seq Naive T cells T1D T1D_6 chip0423_270848 PBMC +9452 CASSLSGEGGMDGEQFF TRBV5-1*01 TRBJ2-1*01 HLA-B*08:01 B2M MHCI HLKRNIVV GFAP HomoSapiens PMID:34811538 tetramer-sort yes amplicon-seq Naive T cells T1D T1D_5 chip0423_246857 PBMC +9454 CAVNSGGGADGLTF TRAV8-3*01 TRAJ45*01 HLA-A*01:01 B2M MHCI LTSLTILQLY G6PC2 HomoSapiens PMID:34811538 tetramer-sort yes amplicon-seq Naive T cells T1D T1D_5 chip0423_395957 PBMC +9455 CAVSDGEGAQKLVF TRAV8-6*01 TRAJ54*01 CASSLTVLAGPNTEALF TRBV7-3*01 TRBJ1-1*01 HLA-B*08:01 B2M MHCI RAKFKQLL BZLF1 EBV PMID:34811538 tetramer-sort yes amplicon-seq effector memory T cells T1D T1D_4 chip0423_516484 PBMC +9456 CASRVGREPTGELFF TRBV3-1*01 TRBJ2-2*01 HLA-B*08:01 B2M MHCI RAKFKQLL BZLF1 EBV PMID:34811538 tetramer-sort yes amplicon-seq effector memory T cells healthy healthy_4 chip0423_741338 PBMC +9457 CVVSERLDYKLSF TRAV8-2*01 TRAJ20*01 CASSPRTGSGEQYF TRBV7-8*01 TRBJ2-7*01 HLA-A*02:01 B2M MHCI RLLPLLALL PREINS HomoSapiens PMID:34811538 tetramer-sort yes amplicon-seq Naive T cells healthy healthy_4 chip0423_680085 PBMC +9458 CASSLRLct??acHHNEQFF TRBV27*01 TRBJ2-1*01 HLA-A*02:01 B2M MHCI GILGFVFTL M1 InfluenzaA PMID:34811538 tetramer-sort yes amplicon-seq transitional T cells between effector and memory populations healthy healthy_3 chip0423_625734 PBMC +9459 CAMRAIEGANNLFF TRAV14/DV4*01 TRAJ36*01 HLA-B*08:01 B2M MHCI RAKFKQLL BZLF1 EBV PMID:34811538 tetramer-sort yes amplicon-seq effector T cells T1D T1D_5 chip0423_790787 PBMC +9460 CAARETSYDKVIF TRAV13-1*01 TRAJ50*01 HLA-B*08:01 B2M MHCI RAKFKQLL BZLF1 EBV PMID:34811538 tetramer-sort yes amplicon-seq transitional T cells between effector and memory populations T1D T1D_5 chip0423_635086 PBMC +9461 CASSLTVLAGPNTEAFF TRBV7-3*01 TRBJ1-1*01 HLA-B*08:01 B2M MHCI RAKFKQLL BZLF1 EBV PMID:34811538 tetramer-sort yes amplicon-seq effector memory T cells T1D T1D_4 chip0423_609838 PBMC +9462 CAVEDQGRSYNTDKLIF TRAV2*01 TRAJ34*01 HLA-B*08:01 B2M MHCI RAKFKQLL BZLF1 EBV PMID:34811538 tetramer-sort yes amplicon-seq effector memory T cells healthy healthy_4 chip0423_562964 PBMC +9463 CASSPLGEVNEQYF TRBV7-9*01 TRBJ2-7*01 HLA-B*08:01 B2M MHCI RAKFKQLL BZLF1 EBV PMID:34811538 tetramer-sort yes amplicon-seq effector memory T cells T1D T1D_5 chip0423_413018 PBMC +9464 CASSEGTGSGETQYF TRBV19*01 TRBJ2-5*01 HLA-A*02:01 B2M MHCI YLLEMLWRL LMP1 EBV PMID:34811538 tetramer-sort yes amplicon-seq transitional T cells between effector and memory populations healthy healthy_4 chip0423_322224 PBMC +9465 CASRGPVGIAQFF TRBV28*01 TRBJ2-1*01 HLA-A*02:01 B2M MHCI LLAGIGTVPI PGT HomoSapiens PMID:34811538 tetramer-sort yes amplicon-seq Naive T cells healthy healthy_3 chip0423_170323 PBMC +9466 CASSQLGGVYNEQFF TRBV7-9*01 TRBJ2-1*01 HLA-B*08:01 B2M MHCI RAKFKQLL BZLF1 EBV PMID:34811538 tetramer-sort yes amplicon-seq effector T cells T1D T1D_5 chip0423_835798 PBMC +9467 CASSLLGRSNTEVFF TRBV7-9*01 TRBJ1-1*01 HLA-B*08:01 B2M MHCI RAKFKQLL BZLF1 EBV PMID:34811538 tetramer-sort yes amplicon-seq effector memory T cells T1D T1D_5 chip0423_726204 PBMC +9468 CAVSGANFGNEKLTF TRAV12-2*01 TRAJ48*01 CASSVGSGRDYEQYF TRBV9*01 TRBJ2-7*01 HLA-B*08:01 B2M MHCI TLKKMREI GAD2 HomoSapiens PMID:34811538 tetramer-sort yes amplicon-seq Naive T cells T1D T1D_4 chip0423_487420 PBMC +9469 CAGAGG*SNLSI TRAV27*01,TRAV35*01 TRAJ42*01 CAWSVGGSTEAFF TRBV30*01 TRBJ1-1*01 HLA-A*01:01 B2M MHCI CTELKLSDY NP InfluenzaA PMID:34811538 tetramer-sort yes amplicon-seq transitional T cells between effector and memory populations healthy healthy_3 chip0423_213099 PBMC +9470 CASSLAVGEGPQHF TRBV7-9*01 TRBJ1-5*01 HLA-B*08:01 B2M MHCI RAKFKQLL BZLF1 EBV PMID:34811538 tetramer-sort yes amplicon-seq effector memory T cells T1D T1D_4 chip0423_792948 PBMC +9471 CVAPASGGSYIPTF TRAV12-1*01 TRAJ6*01 HLA-A*02:01 B2M MHCI YLQQNWWTL LMP1 EBV PMID:34811538 tetramer-sort yes amplicon-seq effector memory T cells healthy healthy_3 chip0423_788207 PBMC +9472 CAGPLDGGSQGNLIF TRAV25*01 TRAJ42*01 HLA-A*02:01 B2M MHCI GILGFVFTL M1 InfluenzaA PMID:34811538 tetramer-sort yes amplicon-seq transitional T cells between effector and memory populations healthy healthy_3 chip0423_142645 PBMC +9474 CASSDDGMNTEAFF TRBV10-2*01 TRBJ1-1*01 HLA-A*02:01 B2M MHCI CLGGLLTMV LMP2A EBV PMID:34811538 tetramer-sort yes amplicon-seq central memory T cells healthy healthy_3 chip0423_121615 PBMC +9475 CASSLGPLPYNEQFF TRBV5-5*01 TRBJ2-1*01 HLA-A*01:01 B2M MHCI LTSLTILQLY G6PC2 HomoSapiens PMID:34811538 tetramer-sort yes amplicon-seq transitional T cells between effector and memory populations T1D T1D_4 chip0423_854881 PBMC +9476 CIVREGGGAGGLTV TRAV26-1*01 TRAJ45*01 CASSLAVGEGPQHF TRBV7-9*01 TRBJ1-5*01 HLA-B*08:01 B2M MHCI RAKFKQLL BZLF1 EBV PMID:34811538 tetramer-sort yes amplicon-seq effector T cells T1D T1D_4 chip0423_369004 PBMC +9477 CATSEMGGSEAFF TRBV24-1*01 TRBJ1-1*01 HLA-B*08:01 B2M MHCI RAKFKQLL BZLF1 EBV PMID:34811538 tetramer-sort yes amplicon-seq effector T cells T1D T1D_5 chip0423_867435 PBMC +9478 CALGYFGNEQLTF TRAV9-2*01 TRAJ48*01 CARSSPGGAQPQHF TRBV7-9*01 TRBJ1-5*01 HLA-A*01:01 B2M MHCI HSNLNDATY NP InfluenzaA PMID:34811538 tetramer-sort yes amplicon-seq Naive T cells healthy healthy_3 chip0423_754145 PBMC +9479 CANSEMWGAPLHF TRBV2*01 TRBJ1-6*01 HLA-A*01:01 B2M MHCI CTELKLSDY NP InfluenzaA PMID:34811538 tetramer-sort yes amplicon-seq transitional T cells between effector and memory populations healthy healthy_3 chip0423_601505 PBMC +9480 CAVNPSFQKLVF TRAV12-2*01 TRAJ8*01 CASSQEGQGAGELFF TRBV4-1*01 TRBJ2-2*01 HLA-A*01:01 B2M MHCI CTELKLSDY NP InfluenzaA PMID:34811538 tetramer-sort yes amplicon-seq transitional T cells between effector and memory populations healthy healthy_3 chip0423_548189 PBMC +9481 WVEKV*L??tVNEKLTF TRAV5*01 TRAJ48*01 CASSPGLAGNSEQYF TRBV7-2*01 TRBJ2-7*01 HLA-A*01:01 B2M MHCI HSNLNDATY NP InfluenzaA PMID:34811538 tetramer-sort yes amplicon-seq Naive T cells T1D T1D_5 chip0423_767654 PBMC +9482 CASSLAVGEGPQHF TRBV7-9*01 TRBJ1-5*01 HLA-B*08:01 B2M MHCI RAKFKQLL BZLF1 EBV PMID:34811538 tetramer-sort yes amplicon-seq effector T cells T1D T1D_4 chip0423_663924 PBMC +9483 CASSLAIGTPYGYTF TRBV5-5*01 TRBJ1-2*01 HLA-A*01:01 B2M MHCI HSNLNDATY NP InfluenzaA PMID:34811538 tetramer-sort yes amplicon-seq Naive T cells T1D T1D_6 chip0423_634244 PBMC +9484 CALMRYSTLTF TRAV9-2*01 TRAJ11*01 CASSELGDTQYF TRBV25-1*01 TRBJ2-3*01 HLA-A*02:01 B2M MHCI GILGFVFTL M1 InfluenzaA PMID:34811538 tetramer-sort yes amplicon-seq central memory T cells healthy healthy_4 chip0423_629971 PBMC +9485 CASSAAGTENIQYF TRBV28*01 TRBJ2-4*01 HLA-A*02:01 B2M MHCI FLGKIWPSYK GAG HIV-1 PMID:34811538 tetramer-sort yes amplicon-seq central memory T cells healthy healthy_3 chip0423_588474 PBMC +9486 CASSLHPW??gAAYNEQFF TRBV4-3*01 TRBJ2-1*01 HLA-B*08:01 B2M MHCI FLRGRAYGL EBNA3A EBV PMID:34811538 tetramer-sort yes amplicon-seq effector memory T cells T1D T1D_6 chip0423_549699 PBMC +9487 CAYGQNFVF TRAV8-3*01 TRAJ26*01 CASSADSDYGYTF TRBV9*01 TRBJ1-2*01 HLA-A*02:01 B2M MHCI YLLEMLWRL LMP1 EBV PMID:34811538 tetramer-sort yes amplicon-seq effector memory T cells T1D T1D_4 chip0423_725367 PBMC +9489 CAAQSGMDTQYF TRBV11-1*01 TRBJ2-3*01 HLA-A*02:01 B2M MHCI LLAGIGTVPI PGT HomoSapiens PMID:34811538 tetramer-sort yes amplicon-seq Naive T cells T1D T1D_6 chip0423_738089 PBMC +9490 CAVRDIGF TRAV3*01 TRAJ34*01,TRAJ43*01 HLA-B*08:01 B2M MHCI EIYKRWII Gag HIV-1 PMID:34811538 tetramer-sort yes amplicon-seq Naive T cells T1D T1D_6 chip0423_605218 PBMC +9491 CAEGETSYDKVIF TRAV5*01 TRAJ50*01 CASSHTSSLPDTQYF TRBV7-9*01 TRBJ2-3*01 HLA-B*08:01 B2M MHCI RAKFKQLL BZLF1 EBV PMID:34811538 tetramer-sort yes amplicon-seq effector memory T cells T1D T1D_5 chip0423_440971 PBMC +9492 CAVGTVAct?GRPGALIF TRAV8-3*01 TRAJ37*01 CASSLAGREGTQYF TRBV11-3*01 TRBJ2-3*01 HLA-B*08:01 B2M MHCI ELRSRYWAI NP InfluenzaA PMID:34811538 tetramer-sort yes amplicon-seq transitional T cells between effector and memory populations T1D T1D_6 chip0423_764617 PBMC +9493 CASRATRDYYVYTF TRBV3-1*01 TRBJ1-2*01 HLA-A*02:01 B2M MHCI YVLDHLIVV BRLF1 EBV PMID:34811538 tetramer-sort yes amplicon-seq effector T cells healthy healthy_4 chip0423_538913 PBMC +9494 CTRRSYCGGYQKGTF TRAV19*01 TRAJ13*01 HLA-A*01:01 B2M MHCI CTELKLSDY NP InfluenzaA PMID:34811538 tetramer-sort yes amplicon-seq transitional T cells between effector and memory populations healthy healthy_3 chip0423_685292 PBMC +9495 CSASRDSYEQYF TRBV20-1*01 TRBJ2-7*01 HLA-A*02:01 B2M MHCI YLLEMLWRL LMP1 EBV PMID:34811538 tetramer-sort yes amplicon-seq transitional T cells between effector and memory populations T1D T1D_4 chip0423_423744 PBMC +9497 CVVSRGQR??cSTLGRLYF TRAV10*01 TRAJ18*01 CASSRNPQSKYF TRBV28*01 TRBJ2-7*01 HLA-A*02:01 B2M MHCI TLLANVTAV VP6 RotavirusA PMID:34811538 tetramer-sort yes amplicon-seq transitional T cells between effector and memory populations T1D T1D_6 chip0423_539791 PBMC +9498 CILPLAGGTSYGKLTF TRAV26-2*01 TRAJ52*01 CASSSGQAYEQYF TRBV7-8*01 TRBJ2-7*01 HLA-B*08:01 B2M MHCI FLRGRAYGL EBNA3A EBV PMID:34811538 tetramer-sort yes amplicon-seq effector memory T cells healthy healthy_4 chip0423_575539 PBMC +9499 CAVGSPNYGGSQGNLIF TRAV36/DV7*01 TRAJ42*01 YASGPTHGYTF TRBV12-5*01 TRBJ1-2*01 HLA-A*01:01 B2M MHCI CTELKLSDY NP InfluenzaA PMID:34811538 tetramer-sort yes amplicon-seq transitional T cells between effector and memory populations healthy healthy_3 chip0423_571553 PBMC +9500 LCQQPD??gSATQYF TRBV6-2*01,TRBV6-3*01 TRBJ2-3*01 HLA-A*02:01 B2M MHCI YVLDHLIVV BRLF1 EBV PMID:34811538 tetramer-sort yes amplicon-seq effector memory T cells healthy healthy_3 chip0423_284213 PBMC +9502 CAVNRHGQNFVF TRAV12-2*01 TRAJ26*01 CASSEAGAQGGDGYTF TRBV2*01 TRBJ1-2*01 HLA-A*02:01 B2M MHCI LLAGIGTVPI PGT HomoSapiens PMID:34811538 tetramer-sort yes amplicon-seq Naive T cells healthy healthy_3 chip0423_79350 PBMC +9503 CASSPPGRKEKLFF TRAV9-2*01 TRAJ5*01,TRAJ16*01 CASSPPGRNEKLFF TRBV12-3*01,TRBV12-4*01 TRBJ1-4*01 HLA-B*08:01 B2M MHCI RAKFKQLL BZLF1 EBV PMID:34811538 tetramer-sort yes amplicon-seq effector memory T cells T1D T1D_5 chip0423_271041 PBMC +9504 CAAFF*DGQKPLF TRAV27*01 TRAJ16*01 CASSGTSGTNSYEQYF TRBV2*01 TRBJ2-7*01 HLA-B*08:01 B2M MHCI ILKGKFQTA NP InfluenzaA PMID:34811538 tetramer-sort yes amplicon-seq transitional T cells between effector and memory populations T1D T1D_4 chip0423_236643 PBMC +9506 CAMSLSNFGNEKLPF TRAV12-3*01 TRAJ48*01 CSAREGPGQGRWEQYF TRBV20-1*01 TRBJ2-7*01 HLA-A*02:01 B2M MHCI LLAGIGTVPI PGT HomoSapiens PMID:34811538 tetramer-sort yes amplicon-seq Naive T cells T1D T1D_6 chip0423_717148 PBMC +9509 CASSIRSSYEQYF TRBV19*01 TRBJ2-7*01 HLA-A*02:01 B2M MHCI GILGFVFTL M1 InfluenzaA PMID:34811538 tetramer-sort yes amplicon-seq transitional T cells between effector and memory populations T1D T1D_6 chip0423_425370 PBMC +9510 CGADYGSGTYKYIF TRAV34*01 TRAJ40*01 CSAGSGEGYEQYF TRBV29-1*01 TRBJ2-7*01 HLA-B*08:01 B2M MHCI RAKFKQLL BZLF1 EBV PMID:34811538 tetramer-sort yes amplicon-seq effector memory T cells healthy healthy_4 chip0423_318403 PBMC +9511 CASSLLGTVDNSPLHF TRBV7-9*01 TRBJ1-6*01 HLA-B*08:01 B2M MHCI RAKFKQLL BZLF1 EBV PMID:34811538 tetramer-sort yes amplicon-seq transitional T cells between effector and memory populations T1D T1D_5 chip0423_70290 PBMC +9512 CALEEDNARLMF TRAV38-1*01 TRAJ31*01 CASSLRLSYEQYF TRBV27*01 TRBJ2-7*01 HLA-B*08:01 B2M MHCI RAKFKQLL BZLF1 EBV PMID:34811538 tetramer-sort yes amplicon-seq effector memory T cells healthy healthy_5 chip0423_36313 PBMC +9514 CASSLYPTEWYF TRBV27*01 TRBJ2-7*01 HLA-A*02:01 B2M MHCI GLCTLVAML BLMF1 EBV PMID:34811538 tetramer-sort yes amplicon-seq effector memory T cells T1D T1D_4 chip0423_607469 PBMC +9515 CILPLAGDTSYGKLTF TRAV26-2*01 TRAJ52*01 HLA-B*08:01 B2M MHCI FLRGRAYGL EBNA3A EBV PMID:34811538 tetramer-sort yes amplicon-seq effector memory T cells T1D T1D_6 chip0423_491606 PBMC +9516 CVVSASGGSYIPTF TRAV10*01 TRAJ6*01 CASSPTVGFAGELFF TRBV4-3*01 TRBJ2-2*01 HLA-B*08:01 B2M MHCI FLRGRAYGL EBNA3A EBV PMID:34811538 tetramer-sort yes amplicon-seq effector memory T cells T1D T1D_4 chip0423_535016 PBMC +9517 LAGGGGGSQGNLIF TRAV27*01 TRAJ42*01 CSAGRDGTNEKLFF TRBV29-1*01 TRBJ1-4*01 HLA-A*02:01 B2M MHCI GILGFVFTL M1 InfluenzaA PMID:34811538 tetramer-sort yes amplicon-seq transitional T cells between effector and memory populations healthy healthy_3 chip0423_730591 PBMC +9518 CAMRPHFGTEILTF TRAV41*01 TRAJ48*01 CASSSYRDLMNTEAFF TRBV7-2*01 TRBJ1-1*01 HLA-A*02:01 B2M MHCI LLAGIGTVPI PGT HomoSapiens PMID:34811538 tetramer-sort yes amplicon-seq Naive T cells T1D T1D_4 chip0423_370702 PBMC +9520 CILPLAGGTSYGKLTF TRAV26-2*01 TRAJ52*01 CASSLGQAYEQYF TRBV7-8*01 TRBJ2-7*01 HLA-B*08:01 B2M MHCI FLRGRAYGL EBNA3A EBV PMID:34811538 tetramer-sort yes amplicon-seq central memory T cells T1D T1D_6 chip0423_610982 PBMC +9521 CASSQDLTGWDYGYTF TRBV4-2*01 TRBJ1-2*01 HLA-A*02:01 B2M MHCI ILSAHVATA ZNT8 HomoSapiens PMID:34811538 tetramer-sort yes amplicon-seq Naive T cells T1D T1D_4 chip0423_359701 PBMC +9524 CASSFGYEQYF TRBV7-9*01 TRBJ2-7*01 HLA-B*08:01 B2M MHCI FLRGRAYGL EBNA3A EBV PMID:34811538 tetramer-sort yes amplicon-seq Naive T cells T1D T1D_6 chip0423_15769 PBMC +9525 CASSQSLAGGWQYF TRBV3-1*01 TRBJ2-7*01 HLA-A*02:01 B2M MHCI LLAGIGTVPI PGT HomoSapiens PMID:34811538 tetramer-sort yes amplicon-seq Naive T cells healthy healthy_3 chip0423_261318 PBMC +9526 CASSQVLRGKAFF TRAV36/DV7*01 TRAJ40*01 CASSQVLRGKAFF TRBV4-3*01 TRBJ1-1*01 HLA-A*02:01 B2M MHCI ALGIGILTV MART1 HomoSapiens PMID:34811538 tetramer-sort yes amplicon-seq Naive T cells healthy healthy_3 chip0423_46063 PBMC +9527 CAVRGGDRAPRLVF TRAV8-6*01 TRAJ54*01 CASSLTVLAGPNTEAFF TRBV7-3*01 TRBJ1-1*01 HLA-B*08:01 B2M MHCI RAKFKQLL BZLF1 EBV PMID:34811538 tetramer-sort yes amplicon-seq effector memory T cells T1D T1D_4 chip0423_799503 PBMC +9528 CAMSRSNFGNEKLTF TRAV12-3*01 TRAJ48*01 CASSQDDSLKNTEAFF TRBV4-1*01 TRBJ1-1*01 HLA-A*02:01 B2M MHCI LLAGIGTVPI PGT HomoSapiens PMID:34811538 tetramer-sort yes amplicon-seq Naive T cells T1D T1D_6 chip0423_717131 PBMC +9529 CASSPLLATQGYEQYF TRBV19*01 TRBJ2-7*01 HLA-A*01:01 B2M MHCI CTELKLSDY NP InfluenzaA PMID:34811538 tetramer-sort yes amplicon-seq transitional T cells between effector and memory populations healthy healthy_3 chip0423_441005 PBMC +9530 CASSLSSGGRGEQYF TRBV4-1*01 TRBJ2-7*01 HLA-B*08:01 B2M MHCI RAKFKQLL BZLF1 EBV PMID:34811538 tetramer-sort yes amplicon-seq effector T cells T1D T1D_5 chip0423_340581 PBMC +9531 CASSMRSTDTQYF TRBV19*01 TRBJ2-3*01 HLA-A*02:01 B2M MHCI GILGFVFTL M1 InfluenzaA PMID:34811538 tetramer-sort yes amplicon-seq transitional T cells between effector and memory populations T1D T1D_6 chip0423_419201 PBMC +9532 CAVYSGTYKYIF TRAV8-1*01 TRAJ40*01 CARRLHPW??gAPYHAQFF TRBV4-3*01 TRBJ2-1*01 HLA-A*02:01 B2M MHCI YVLDHLIVV BRLF1 EBV PMID:34811538 tetramer-sort yes amplicon-seq effector memory T cells healthy healthy_3 chip0423_882902 PBMC +9533 CASSYDRGGYGYTF TRBV6-5*01 TRBJ1-2*01 HLA-A*01:01 B2M MHCI LTSLTILQLY G6PC2 HomoSapiens PMID:34811538 tetramer-sort yes amplicon-seq Naive T cells T1D T1D_6 chip0423_626262 PBMC +9534 CAMREGTNAGKSTF TRAV14/DV4*01 TRAJ27*01 HLA-B*08:01 B2M MHCI NLIFKWKSI G6PC2 HomoSapiens PMID:34811538 tetramer-sort yes amplicon-seq Naive T cells T1D T1D_6 chip0423_424394 PBMC +9535 CASSESPAPGNEKLFF TRBV6-1*01 TRBJ1-4*01 HLA-A*01:01 B2M MHCI STNVGSNTY IAPP HomoSapiens PMID:34811538 tetramer-sort yes amplicon-seq central memory T cells T1D T1D_6 chip0423_44509 PBMC +9536 CVVNMPLKYNFNKFYF TRAV12-1*01 TRAJ21*01 CASGTGAGELFF TRBV19*01 TRBJ2-2*01 HLA-A*02:01 B2M MHCI GILGFVFTL M1 InfluenzaA PMID:34811538 tetramer-sort yes amplicon-seq transitional T cells between effector and memory populations healthy healthy_3 chip0423_709043 PBMC +9537 CALANYGGSQENLIF TRAV24*01 TRAJ42*01 HLA-A*01:01 B2M MHCI CTELKLSDY NP InfluenzaA PMID:34811538 tetramer-sort yes amplicon-seq transitional T cells between effector and memory populations healthy healthy_3 chip0423_773379 PBMC +9538 CSARDWTPNNEQFF TRBV20-1*01 TRBJ2-1*01 HLA-A*02:01 B2M MHCI RGPGRAFVTI GP160 HIV-1 PMID:34811538 tetramer-sort yes amplicon-seq Naive T cells healthy healthy_3 chip0423_706548 PBMC +9539 CASRAGREPTGELFF TRBV3-1*01 TRBJ2-2*01 HLA-B*08:01 B2M MHCI RAKFKQLL BZLF1 EBV PMID:34811538 tetramer-sort yes amplicon-seq effector memory T cells healthy healthy_4 chip0423_201685 PBMC +9540 CAAKVGGNNRLAF TRAV23/DV6*01 TRAJ7*01 CASSQRQVSNTEAFF TRBV4-1*01 TRBJ1-1*01 HLA-B*08:01 B2M MHCI YLKDQQLL gp160 HIV-1 PMID:34811538 tetramer-sort yes amplicon-seq Naive T cells T1D T1D_6 chip0423_492052 PBMC +9541 CASSQDGLAATSTDTQYF TRBV4-1*01 TRBJ2-3*01 HLA-A*01:01 B2M MHCI CTELKLSDY NP InfluenzaA PMID:34811538 tetramer-sort yes amplicon-seq effector memory T cells healthy healthy_3 chip0423_475316 PBMC +9542 SILPLAGGPRYGPLTL TRAV26-2*01 TRAJ52*01 CASSLGQAYEQYF TRBV7-8*01 TRBJ2-7*01 HLA-B*08:01 B2M MHCI FLRGRAYGL EBNA3A EBV PMID:34811538 tetramer-sort yes amplicon-seq effector memory T cells T1D T1D_6 chip0423_423557 PBMC +9543 CAAGENct??ccYDKVIF TRAV13-1*01 TRAJ50*01 HLA-B*08:01 B2M MHCI RAKFKQLL BZLF1 EBV PMID:34811538 tetramer-sort yes amplicon-seq effector memory T cells healthy healthy_4 chip0423_155464 PBMC +9544 CASSQGPGFTDTQYF TRBV4-1*01 TRBJ2-3*01 HLA-B*08:01 B2M MHCI MALWMRLL INS HomoSapiens PMID:34811538 tetramer-sort yes amplicon-seq natural killer-like T cells T1D T1D_6 chip0423_850956 PBMC +9546 CASSLRSGGRGEQYF TRBV4-1*01 TRBJ2-7*01 HLA-B*08:01 B2M MHCI RAKFKQLL BZLF1 EBV PMID:34811538 tetramer-sort yes amplicon-seq effector memory T cells T1D T1D_5 chip0423_516426 PBMC +9547 CAVRDGEGAQKLVF TRAV8-6*01 TRAJ54*01 CASSLTVLAGPNTEAFF TRBV7-3*01 TRBJ1-1*01 HLA-B*08:01 B2M MHCI RAKFKQLL BZLF1 EBV PMID:34811538 tetramer-sort yes amplicon-seq effector memory T cells T1D T1D_4 chip0423_330258 PBMC +9548 CAEMETSYDKVIF TRAV13-2*01 TRAJ50*01 CASSSLSGGAGNEQFF TRBV7-9*01 TRBJ2-1*01 HLA-B*08:01 B2M MHCI RAKFKQLL BZLF1 EBV PMID:34811538 tetramer-sort yes amplicon-seq effector memory T cells T1D T1D_5 chip0423_651429 PBMC +9550 CAVSPNDYKLSF TRAV8-4*01 TRAJ20*01 HLA-A*02:01 B2M MHCI GILGFVFTL M1 InfluenzaA PMID:34811538 tetramer-sort yes amplicon-seq Naive T cells T1D T1D_6 chip0423_394246 PBMC +9551 CASSSTGAGNQPQHF TRBV7-9*01 TRBJ1-5*01 HLA-B*08:01 B2M MHCI RAKFKQLL BZLF1 EBV PMID:34811538 tetramer-sort yes amplicon-seq effector T cells T1D T1D_4 chip0423_347104 PBMC +9552 CAMREGESSASKIIF TRAV14/DV4*01 TRAJ3*01 CSVGQAYGYTF TRBV29-1*01 TRBJ1-2*01 HLA-B*08:01 B2M MHCI RAKFKQLL BZLF1 EBV PMID:34811538 tetramer-sort yes amplicon-seq effector memory T cells T1D T1D_5 chip0423_660605 PBMC +9553 CASSLAVGEGPQHF TRBV7-9*01 TRBJ1-5*01 HLA-B*08:01 B2M MHCI RAKFKQLL BZLF1 EBV PMID:34811538 tetramer-sort yes amplicon-seq effector T cells T1D T1D_4 chip0423_372299 PBMC +9554 CASSYSQGQPQHF TRBV6-5*01 TRBJ1-5*01 HLA-A*02:01 B2M MHCI LLAGIGTVPI PGT HomoSapiens PMID:34811538 tetramer-sort yes amplicon-seq Naive T cells T1D T1D_6 chip0423_351364 PBMC +9555 CAVQAPG??cTCNRFCF TRAV20*01 TRAJ49*01 HLA-A*01:01 B2M MHCI CTELKLSDY NP InfluenzaA PMID:34811538 tetramer-sort yes amplicon-seq transitional T cells between effector and memory populations healthy healthy_3 chip0423_284470 PBMC +9557 CAMSGSNFGPEPFPF TRAV12-3*01 TRAJ48*01 CASSPRLAGDQETQYF TRBV18*01 TRBJ2-5*01 HLA-A*02:01 B2M MHCI LLAGIGTVPI PGT HomoSapiens PMID:34811538 tetramer-sort yes amplicon-seq Naive T cells healthy healthy_4 chip0423_659454 PBMC +9558 CAPLGNPDKLIF TRAV25*01 TRAJ34*01 CASRTGGDTGELFF TRBV10-2*01 TRBJ2-2*01 HLA-A*01:01 B2M MHCI VSATAGTTVY GAD2 HomoSapiens PMID:34811538 tetramer-sort yes amplicon-seq Naive T cells T1D T1D_6 chip0423_476243 PBMC +9560 CAASWSYGGSQGNLIF TRAV13-1*01 TRAJ42*01 CASSPPGLAGFFSYNEQFF TRBV11-1*01 TRBJ2-1*01 HLA-A*02:01 B2M MHCI VIYQYMDDL POL HIV-1 PMID:34811538 tetramer-sort yes amplicon-seq Naive T cells T1D T1D_6 chip0423_705614 PBMC +9561 CAVQAPAc?aGAGALSL TRAV20*01 TRAJ37*01 CATPSRWTIQLVTEAFF TRBV19*01 TRBJ1-1*01 HLA-B*08:01 B2M MHCI MALWMRLL INS HomoSapiens PMID:34811538 tetramer-sort yes amplicon-seq Naive T cells T1D T1D_4 chip0423_655147 PBMC +9562 CAVRANDYKLSF TRAV8-6*01 TRAJ20*01 CASSLGEKLFF TRBV7-6*01 TRBJ1-4*01 HLA-A*02:01 B2M MHCI VLFGLGFAI IGRP HomoSapiens PMID:34811538 tetramer-sort yes amplicon-seq Naive T cells healthy healthy_4 chip0423_75407 PBMC +9563 CAMSISNFGNEKLTF TRAV12-3*01 TRAJ48*01 CASSGGLGSGYTF TRBV12-3*01,TRBV12-4*01 TRBJ1-2*01 HLA-A*02:01 B2M MHCI LLAGIGTVPI PGT HomoSapiens PMID:34811538 tetramer-sort yes amplicon-seq Naive T cells T1D T1D_6 chip0423_5121 PBMC +9564 CASSPLGSNEKLFF TRBV7-9*01 TRBJ1-4*01 HLA-B*08:01 B2M MHCI RAKFKQLL BZLF1 EBV PMID:34811538 tetramer-sort yes amplicon-seq effector memory T cells T1D T1D_5 chip0423_475586 PBMC +9565 CALSEADNARLMF TRAV19*01 TRAJ31*01 CASSSGTTTTDTQYF TRBV7-8*01 TRBJ2-3*01 HLA-A*02:01 B2M MHCI VLFGLGFAI IGRP HomoSapiens PMID:34811538 tetramer-sort yes amplicon-seq Naive T cells healthy healthy_3 chip0423_342079 PBMC +9566 CAVAGDSNYQLIW TRAV12-2*01 TRAJ33*01 CASSYARYNEQFF TRBV6-5*01 TRBJ2-1*01 HLA-A*02:01 B2M MHCI LLAGIGTVPI PGT HomoSapiens PMID:34811538 tetramer-sort yes amplicon-seq Naive T cells healthy healthy_3 chip0423_353724 PBMC +9567 CAASETSYDKVIF TRAV13-1*01 TRAJ50*01 CASTELGNQETQYF TRBV7-9*01 TRBJ2-5*01 HLA-B*08:01 B2M MHCI RAKFKQLL BZLF1 EBV PMID:34811538 tetramer-sort yes amplicon-seq effector memory T cells T1D T1D_5 chip0423_262879 PBMC +9568 CAAGETSYDKVIF TRAV13-1*01 TRAJ50*01 CASSLLGSQNTEAFF TRBV7-9*01 TRBJ1-1*01 HLA-B*08:01 B2M MHCI RAKFKQLL BZLF1 EBV PMID:34811538 tetramer-sort yes amplicon-seq effector T cells T1D T1D_5 chip0423_834115 PBMC +9569 CASSFSGGPGGGYTF TRBV12-3*01,TRBV12-4*01 TRBJ1-2*01 HLA-B*08:01 B2M MHCI RAKFKQLL BZLF1 EBV PMID:34811538 tetramer-sort yes amplicon-seq transitional T cells between effector and memory populations healthy healthy_5 chip0423_53934 PBMC +9570 CALANYGGSQGNLIF TRAV24*01 TRAJ42*01 HLA-A*01:01 B2M MHCI CTELKLSDY NP InfluenzaA PMID:34811538 tetramer-sort yes amplicon-seq transitional T cells between effector and memory populations healthy healthy_3 chip0423_34995 PBMC +9571 CAWRSAGTSYEQYF TRBV30*01 TRBJ2-7*01 HLA-A*02:01 B2M MHCI ALGIGILTV MART1 HomoSapiens PMID:34811538 tetramer-sort yes amplicon-seq Naive T cells T1D T1D_6 chip0423_33093 PBMC +9572 CAASETSYDKVIF TRAV13-1*01 TRAJ50*01 CASSPLGDSAYEQYF TRBV7-9*01 TRBJ2-7*01 HLA-B*08:01 B2M MHCI RAKFKQLL BZLF1 EBV PMID:34811538 tetramer-sort yes amplicon-seq transitional T cells between effector and memory populations T1D T1D_5 chip0423_763754 PBMC +9573 CASSSGQAYEQYL TRBV7-8*01 TRBJ2-7*01 HLA-B*08:01 B2M MHCI FLRGRAYGL EBNA3A EBV PMID:34811538 tetramer-sort yes amplicon-seq effector memory T cells healthy healthy_4 chip0423_630312 PBMC +9574 CASQLAGGTGELFF TRBV24-1*01 TRBJ2-2*01 HLA-B*08:01 B2M MHCI RAKFKQLL BZLF1 EBV PMID:34811538 tetramer-sort yes amplicon-seq effector memory T cells T1D T1D_5 chip0423_76018 PBMC +9575 CAEGDDKIIF TRAV35*01 TRAJ30*01 HLA-A*01:01 B2M MHCI PTEKGANEY ZNT8 HomoSapiens PMID:34811538 tetramer-sort yes amplicon-seq Naive T cells healthy healthy_3 chip0423_2891 PBMC +9576 CAVGGDDKIIF TRAV8-3*01 TRAJ30*01 CSVWGNEQFF TRBV29-1*01 TRBJ2-1*01 HLA-A*02:01 B2M MHCI RLLPLLALLAL INS HomoSapiens PMID:34811538 tetramer-sort yes amplicon-seq Naive T cells T1D T1D_4 chip0423_774563 PBMC +9577 CASSQAPGQRTGELFF TRBV4-1*01 TRBJ2-2*01 HLA-B*08:01 B2M MHCI RAKFKQLL BZLF1 EBV PMID:34811538 tetramer-sort yes amplicon-seq effector memory T cells healthy healthy_4 chip0423_658444 PBMC +9579 CAMSVANFGNEKFTF TRAV12-3*01 TRAJ48*01 CASSFPRAVRTSYNEQFF TRBV28*01 TRBJ2-1*01 HLA-A*02:01 B2M MHCI LLAGIGTVPI PGT HomoSapiens PMID:34811538 tetramer-sort yes amplicon-seq Naive T cells healthy healthy_3 chip0423_121677 PBMC +9580 CAVSHASGGRSLPTF TRAV1-2*01 TRAJ6*01 CASSVSWGGSYEQYF TRBV9*01 TRBJ2-7*01 HLA-B*08:01 B2M MHCI ALKCKGFHV NP InfluenzaA PMID:34811538 tetramer-sort yes amplicon-seq Naive T cells T1D T1D_6 chip0423_880043 PBMC +9583 CSASRTF TRBV20-1*01 TRBJ2-3*01 HLA-A*02:01 B2M MHCI LLAGIGTVPI PGT HomoSapiens PMID:34811538 tetramer-sort yes amplicon-seq Naive T cells healthy healthy_3 chip0423_614911 PBMC +9585 CASSFNVGAFF TRAV36/DV7*01 TRAJ40*01 CASSFNVEAFF TRBV7-9*01 TRBJ1-1*01 HLA-B*08:01 B2M MHCI YAKWKLCSA ZNT8 HomoSapiens PMID:34811538 tetramer-sort yes amplicon-seq Naive T cells T1D T1D_5 chip0423_38953 PBMC +9586 CAARLGAca??ccSDDKVIF TRAV13-1*01 TRAJ50*01 CASSWGQGPTYEQYF TRBV4-1*01 TRBJ2-7*01 HLA-B*08:01 B2M MHCI RAKFKQLL BZLF1 EBV PMID:34811538 tetramer-sort yes amplicon-seq effector T cells healthy healthy_4 chip0423_746279 PBMC +9587 CASSLGQAYEQYF TRBV7-8*01 TRBJ2-7*01 HLA-B*08:01 B2M MHCI FLRGRAYGL EBNA3A EBV PMID:34811538 tetramer-sort yes amplicon-seq effector T cells T1D T1D_6 chip0423_262304 PBMC +9588 CAVSSLYPAGTALIF TRAV12-3*01 TRAJ15*01 CASSHTKGTYEQYF TRBV12-3*01,TRBV12-4*01 TRBJ2-7*01 HLA-A*01:01 B2M MHCI CTELKLSDY NP InfluenzaA PMID:34811538 tetramer-sort yes amplicon-seq transitional T cells between effector and memory populations healthy healthy_3 chip0423_383598 PBMC +9589 CALTDSWGKLQF TRAV12-2*01 TRAJ24*01 CASSEWLGQGYEQYF TRBV2*01 TRBJ2-7*01 HLA-A*02:01 B2M MHCI VMNILLQYV GAD65 HomoSapiens PMID:34811538 tetramer-sort yes amplicon-seq effector T cells healthy healthy_3 chip0423_824051 PBMC +9590 CASR*TGSYAPYF TRBV6-2*01,TRBV6-3*01 TRBJ2-7*01 HLA-A*02:01 B2M MHCI YVLDHLIVV BRLF1 EBV PMID:34811538 tetramer-sort yes amplicon-seq effector memory T cells healthy healthy_4 chip0423_734728 PBMC +9592 WAVEDNYSL??gGGSQGYLIF TRAV2*01 TRAJ42*01 HLA-A*02:01 B2M MHCI LLAGIGTVPI PGT HomoSapiens PMID:34811538 tetramer-sort yes amplicon-seq Naive T cells healthy healthy_3 chip0423_347293 PBMC +9593 CAPDAPNRGSTLGRLYF TRAV17*01 TRAJ18*01 CASSLGQAYEQYF TRBV7-8*01 TRBJ2-7*01 HLA-B*08:01 B2M MHCI EGHLKRNIV GFAP HomoSapiens PMID:34811538 tetramer-sort yes amplicon-seq natural killer-like T cells T1D T1D_5 chip0423_81564 PBMC +9594 CAAAETSYDKVIF TRAV13-1*01 TRAJ50*01 CASQLAGGTGELFF TRBV24-1*01 TRBJ2-2*01 HLA-B*08:01 B2M MHCI RAKFKQLL BZLF1 EBV PMID:34811538 tetramer-sort yes amplicon-seq transitional T cells between effector and memory populations T1D T1D_5 chip0423_562842 PBMC +9595 CAASEGNNNDMRF TRAV29/DV5*01 TRAJ43*01 CASSYLDAGMVMNTEAFF TRBV6-2*01,TRBV6-3*01 TRBJ1-1*01 HLA-A*01:01 B2M MHCI VSATAGTTVY GAD2 HomoSapiens PMID:34811538 tetramer-sort yes amplicon-seq Naive T cells T1D T1D_6 chip0423_876417 PBMC +9598 CAALNLAGGTDNEQFF TRBV7-9*01 TRBJ2-1*01 HLA-B*08:01 B2M MHCI RAKFKQLL BZLF1 EBV PMID:34811538 tetramer-sort yes amplicon-seq effector memory T cells healthy healthy_5 chip0423_139204 PBMC +9599 CAVTSFAKLMF TRAV12-2*01 TRAJ31*01 CASSPNTGLTGELFF TRBV9*01 TRBJ2-2*01 HLA-A*02:01 B2M MHCI LLAGIGTVPI PGT HomoSapiens PMID:34811538 tetramer-sort yes amplicon-seq Naive T cells T1D T1D_6 chip0423_571749 PBMC +9600 CASSDATGDYEQYF TRBV2*01 TRBJ2-7*01 HLA-A*02:01 B2M MHCI ALWMRLLPL PREINS HomoSapiens PMID:34811538 tetramer-sort yes amplicon-seq Naive T cells healthy healthy_3 chip0423_434501 PBMC +9601 CAVNMDSTLTF TRAV12-2*01 TRAJ11*01 CASSPLDRGTGELFF TRBV19*01 TRBJ2-2*01 HLA-A*02:01 B2M MHCI LLAGIGTVPI PGT HomoSapiens PMID:34811538 tetramer-sort yes amplicon-seq Naive T cells T1D T1D_6 chip0423_742949 PBMC +9602 FAVPDTDKLLF TRAV8-1*01 TRAJ34*01 CASTPTPPSFQETQYF TRBV6-1*01 TRBJ2-5*01 HLA-A*02:01 B2M MHCI YVLDHLIVV BRLF1 EBV PMID:34811538 tetramer-sort yes amplicon-seq effector T cells T1D T1D_4 chip0423_656033 PBMC +9603 CAMSRSNFGNEKLTF TRAV12-3*01 TRAJ48*01 HLA-A*02:01 B2M MHCI LLAGIGTVPI PGT HomoSapiens PMID:34811538 tetramer-sort yes amplicon-seq Naive T cells healthy healthy_3 chip0423_420140 PBMC +9604 CAASPIPga?GGPAVLTF TRAV13-1*01 TRAJ45*01 HLA-A*02:01 B2M MHCI LLAGIGTVPI PGT HomoSapiens PMID:34811538 tetramer-sort yes amplicon-seq Naive T cells T1D T1D_4 chip0423_864548 PBMC +9605 CASRVGREPTGELFF TRBV3-1*01 TRBJ2-2*01 HLA-B*08:01 B2M MHCI RAKFKQLL BZLF1 EBV PMID:34811538 tetramer-sort yes amplicon-seq effector memory T cells healthy healthy_4 chip0423_466980 PBMC +9606 CSARVQGEGQPQHF TRBV20-1*01 TRBJ1-5*01 HLA-A*01:01 B2M MHCI HSNLNDATY NP InfluenzaA PMID:34811538 tetramer-sort yes amplicon-seq Naive T cells T1D T1D_6 chip0423_327558 PBMC +9607 CAFLSGSARQLTF TRAV41*01 TRAJ22*01 CASSSLGDRDQTAFF TRBV7-9*01 TRBJ1-1*01 HLA-B*08:01 B2M MHCI RAKFKQLL BZLF1 EBV PMID:34811538 tetramer-sort yes amplicon-seq effector memory T cells T1D T1D_5 chip0423_229920 PBMC +9609 CAGNTGNQFYF TRAV12-2*01 TRAJ49*01 CASSPGYEQYF TRBV6-1*01 TRBJ2-7*01 HLA-A*02:01 B2M MHCI LLFNILGGWV NS4B HCV PMID:34811538 tetramer-sort yes amplicon-seq Naive T cells T1D T1D_4 chip0423_628289 PBMC +9610 CASSRVRGTDTQYF TRBV28*01 TRBJ2-3*01 HLA-A*02:01 B2M MHCI LLAGIGTVPI PGT HomoSapiens PMID:34811538 tetramer-sort yes amplicon-seq transitional T cells between effector and memory populations healthy healthy_3 chip0423_260729 PBMC +9611 CVVTRYHFGNEKLTF TRAV12-1*01 TRAJ48*01 CASSFRPVANSPLHF TRBV5-4*01 TRBJ1-6*01 HLA-A*02:01 B2M MHCI LLAGIGTVPI PGT HomoSapiens PMID:34811538 tetramer-sort yes amplicon-seq Naive T cells healthy healthy_4 chip0423_221547 PBMC +9612 CASSTTRgc??agGLGPLHF TRBV7-9*01 TRBJ1-6*01 HLA-B*08:01 B2M MHCI RAKFKQLL BZLF1 EBV PMID:34811538 tetramer-sort yes amplicon-seq effector memory T cells healthy healthy_4 chip0423_110818 PBMC +9613 CASSQVNNPGDGYTF TRBV14*01 TRBJ1-2*01 HLA-B*08:01 B2M MHCI QAKWRLQTL EBNA3A EBV PMID:34811538 tetramer-sort yes amplicon-seq effector memory T cells T1D T1D_4 chip0423_745525 PBMC +9614 CASSPLGSNEKLFF TRAV36/DV7*01 TRAJ5*01 CASSPLGSNEKLFF TRBV7-9*01 TRBJ1-4*01 HLA-B*08:01 B2M MHCI RAKFKQLL BZLF1 EBV PMID:34811538 tetramer-sort yes amplicon-seq effector memory T cells T1D T1D_5 chip0423_636683 PBMC +9615 CASRVGREPTGELFF TRBV3-1*01 TRBJ2-2*01 HLA-B*08:01 B2M MHCI RAKFKQLL BZLF1 EBV PMID:34811538 tetramer-sort yes amplicon-seq effector memory T cells healthy healthy_4 chip0423_202733 PBMC +9616 CAMSGSNFGNEKLTF TRAV12-3*01 TRAJ48*01 CASSQDPGLAEPDTQYF TRBV3-1*01 TRBJ2-3*01 HLA-A*02:01 B2M MHCI LLAGIGTVPI PGT HomoSapiens PMID:34811538 tetramer-sort yes amplicon-seq Naive T cells T1D T1D_4 chip0423_194468 PBMC +9618 CAVLPSNDYKLSF TRAV12-3*01 TRAJ20*01 CASIGKTTSTDTQYF TRBV19*01 TRBJ2-3*01 HLA-A*01:01 B2M MHCI CTELKLSDY NP InfluenzaA PMID:34811538 tetramer-sort yes amplicon-seq transitional T cells between effector and memory populations healthy healthy_3 chip0423_682566 PBMC +9619 CASSPVREETQYF TRBV7-6*01 TRBJ2-5*01 HLA-B*08:01 B2M MHCI GPKVKQWPL Pol HIV-1 PMID:34811538 tetramer-sort yes amplicon-seq Naive T cells T1D T1D_6 chip0423_449386 PBMC +9620 CASSQTFPNTGELFF TRBV3-1*01 TRBJ2-2*01 HLA-B*08:01 B2M MHCI RAKFKQLL BZLF1 EBV PMID:34811538 tetramer-sort yes amplicon-seq effector memory T cells healthy healthy_4 chip0423_652458 PBMC +9621 CASSIRSGYEQFF TRBV19*01 TRBJ2-1*01 HLA-A*02:01 B2M MHCI GILGFVFTL M1 InfluenzaA PMID:34811538 tetramer-sort yes amplicon-seq transitional T cells between effector and memory populations healthy healthy_3 chip0423_35259 PBMC +9622 CALRALVGANNLFF TRAV14/DV4*01 TRAJ36*01 HLA-B*08:01 B2M MHCI LMHCQTTL GAD2 HomoSapiens PMID:34811538 tetramer-sort yes amplicon-seq Naive T cells T1D T1D_5 chip0423_858052 PBMC +9624 CASSYSGTGVPYGYTF TRBV6-5*01 TRBJ1-2*01 HLA-A*01:01 B2M MHCI STNVGSNTY IAPP HomoSapiens PMID:34811538 tetramer-sort yes amplicon-seq Naive T cells T1D T1D_5 chip0423_718258 PBMC +9625 CAPASGGSYIPTF TRAV24*01 TRAJ6*01 CASCRGGTYEQYF TRBV10-3*01 TRBJ2-7*01 HLA-A*01:01 B2M MHCI CTELKLSDY NP InfluenzaA PMID:34811538 tetramer-sort yes amplicon-seq effector T cells healthy healthy_3 chip0423_658538 PBMC +9626 CASSLIVSGGANEQFF TRBV7-3*01 TRBJ2-1*01 HLA-B*08:01 B2M MHCI RAKFKQLL BZLF1 EBV PMID:34811538 tetramer-sort yes amplicon-seq effector memory T cells healthy healthy_4 chip0423_161674 PBMC +9627 CAGGGSRg?cGGNKLTF TRAV27*01 TRAJ10*01 CSVEGEGQIYNEQFF TRBV29-1*01 TRBJ2-1*01 HLA-A*01:01 B2M MHCI CTELKLSDY NP InfluenzaA PMID:34811538 tetramer-sort yes amplicon-seq transitional T cells between effector and memory populations healthy healthy_3 chip0423_840761 PBMC +9628 CSVAGNTEAFF TRBV29-1*01 TRBJ1-1*01 HLA-A*02:01 B2M MHCI LLAGIGTVPI PGT HomoSapiens PMID:34811538 tetramer-sort yes amplicon-seq Naive T cells T1D T1D_4 chip0423_390942 PBMC +9629 CAEMETSYDKVIF TRAV13-2*01 TRAJ50*01 CASTHPQDVNTGELFF TRBV7-9*01 TRBJ2-2*01 HLA-B*08:01 B2M MHCI RAKFKQLL BZLF1 EBV PMID:34811538 tetramer-sort yes amplicon-seq effector memory T cells T1D T1D_5 chip0423_81065 PBMC +9630 CASSPLGEAKNIQYF TRBV7-9*01 TRBJ2-4*01 HLA-B*08:01 B2M MHCI RAKFKQLL BZLF1 EBV PMID:34811538 tetramer-sort yes amplicon-seq effector memory T cells T1D T1D_5 chip0423_752056 PBMC +9631 CAVRRHQAGTALIF TRAV3*01 TRAJ15*01 CASSFGVGDTEETQYF TRBV5-4*01 TRBJ2-5*01 HLA-A*01:01 B2M MHCI CTELKLSDY NP InfluenzaA PMID:34811538 tetramer-sort yes amplicon-seq transitional T cells between effector and memory populations healthy healthy_3 chip0423_569888 PBMC +9633 CASSLIGQPQETQYF TRBV7-9*01 TRBJ2-5*01 HLA-B*08:01 B2M MHCI RAKFKQLL BZLF1 EBV PMID:34811538 tetramer-sort yes amplicon-seq effector memory T cells T1D T1D_5 chip0423_485243 PBMC +9634 CASSEMWGAPLHF TRBV2*01 TRBJ1-6*01 HLA-A*01:01 B2M MHCI CTELKLSDY NP InfluenzaA PMID:34811538 tetramer-sort yes amplicon-seq transitional T cells between effector and memory populations healthy healthy_3 chip0423_395281 PBMC +9635 CAATETSYDKVIF TRAV13-1*01 TRAJ50*01 CASSPPGRNEKLFF TRBV12-3*01,TRBV12-4*01 TRBJ1-4*01 HLA-B*08:01 B2M MHCI RAKFKQLL BZLF1 EBV PMID:34811538 tetramer-sort yes amplicon-seq effector T cells T1D T1D_5 chip0423_183058 PBMC +9637 CASSQMSDTQYF TRBV6-2*01,TRBV6-3*01 TRBJ2-3*01 HLA-A*02:01 B2M MHCI YVLDHLIVV BRLF1 EBV PMID:34811538 tetramer-sort yes amplicon-seq effector memory T cells healthy healthy_3 chip0423_755712 PBMC +9638 CAMSEDGF TRAV12-3*01 TRAJ27*01 HLA-B*08:01 B2M MHCI RAKFKQLL BZLF1 EBV PMID:34811538 tetramer-sort yes amplicon-seq effector memory T cells tet_neg chip0423_668954 PBMC +9639 CASSLAVGEGPQHF TRBV7-9*01 TRBJ1-5*01 HLA-B*08:01 B2M MHCI RAKFKQLL BZLF1 EBV PMID:34811538 tetramer-sort yes amplicon-seq effector T cells T1D T1D_4 chip0423_680177 PBMC +9640 CSAWTSDSYNEQFF TRBV20-1*01 TRBJ2-1*01 HLA-A*02:01 B2M MHCI GILGFVFTL M1 InfluenzaA PMID:34811538 tetramer-sort yes amplicon-seq central memory T cells healthy healthy_4 chip0423_511349 PBMC +9641 CASRAMt?gGSTPPL TRAV14/DV4*01 TRAJ11*01 CASSEMWGAPLHF TRBV2*01 TRBJ1-6*01 HLA-A*01:01 B2M MHCI CTELKLSDY NP InfluenzaA PMID:34811538 tetramer-sort yes amplicon-seq transitional T cells between effector and memory populations healthy healthy_3 chip0423_727658 PBMC +9642 CASSPPGRNEKLFF TRBV12-3*01,TRBV12-4*01 TRBJ1-4*01 HLA-B*08:01 B2M MHCI RAKFKQLL BZLF1 EBV PMID:34811538 tetramer-sort yes amplicon-seq effector memory T cells T1D T1D_5 chip0423_697585 PBMC +9644 CSVGTSYGYTF TRBV29-1*01 TRBJ1-2*01 HLA-B*08:01 B2M MHCI RAKFKQLL BZLF1 EBV PMID:34811538 tetramer-sort yes amplicon-seq effector memory T cells T1D T1D_5 chip0423_507154 PBMC +9645 CASSLGQAYEQYF TRBV7-8*01 TRBJ2-7*01 HLA-B*08:01 B2M MHCI FLRGRAYGL EBNA3A EBV PMID:34811538 tetramer-sort yes amplicon-seq effector memory T cells T1D T1D_4 chip0423_474403 PBMC +9646 CAATETSYDKVIF TRAV13-1*01 TRAJ50*01 CASSPLGSNEKLFF TRBV7-9*01 TRBJ1-4*01 HLA-B*08:01 B2M MHCI RAKFKQLL BZLF1 EBV PMID:34811538 tetramer-sort yes amplicon-seq effector memory T cells T1D T1D_5 chip0423_564289 PBMC +9647 CASSIGSYGYTF TRBV19*01 TRBJ1-2*01 HLA-A*02:01 B2M MHCI GILGFVFTL M1 InfluenzaA PMID:34811538 tetramer-sort yes amplicon-seq transitional T cells between effector and memory populations healthy healthy_3 chip0423_77358 PBMC +9648 CSADSYRDIDNYGYTF TRBV20-1*01 TRBJ1-2*01 HLA-A*01:01 B2M MHCI CTELKLSDY NP InfluenzaA PMID:34811538 tetramer-sort yes amplicon-seq transitional T cells between effector and memory populations healthy healthy_3 chip0423_769280 PBMC +9650 CASSFIGENYEQYF TRBV7-6*01 TRBJ2-7*01 HLA-B*08:01 B2M MHCI RAKFKQLL BZLF1 EBV PMID:34811538 tetramer-sort yes amplicon-seq central memory T cells T1D T1D_4 chip0423_415953 PBMC +9651 CAPRDMRF TRAV12-2*01 TRAJ43*01 CASSYPQPGNYGYTF TRBV6-5*01 TRBJ1-2*01 HLA-A*02:01 B2M MHCI ALAGIGILTV MART1 HomoSapiens PMID:34811538 tetramer-sort yes amplicon-seq Naive T cells healthy healthy_4 chip0423_172719 PBMC +9652 CASSQDGAPNYEQYF TRBV14*01 TRBJ2-7*01 HLA-A*02:01 B2M MHCI CINGVCWTV NS3 HCV PMID:34811538 tetramer-sort yes amplicon-seq Naive T cells T1D T1D_4 chip0423_827342 PBMC +9653 CILPLAGGTSYGKLTF TRAV26-2*01 TRAJ52*01 CASSSGQAYEQYS TRBV7-8*01 TRBJ2-7*01 HLA-B*08:01 B2M MHCI FLRGRAYGL EBNA3A EBV PMID:34811538 tetramer-sort yes amplicon-seq effector T cells healthy healthy_4 chip0423_478416 PBMC +9654 CASGPTHGYTF TRBV12-5*01 TRBJ1-2*01 HLA-A*01:01 B2M MHCI CTELKLSDY NP InfluenzaA PMID:34811538 tetramer-sort yes amplicon-seq effector T cells healthy healthy_3 chip0423_360356 PBMC +9655 CASSQVNNPGDGYTF TRBV14*01 TRBJ1-2*01 HLA-B*08:01 B2M MHCI QAKWRLQTL EBNA3A EBV PMID:34811538 tetramer-sort yes amplicon-seq effector memory T cells T1D T1D_4 chip0423_508127 PBMC +9656 CALRGGTQGNLIF TRAV12-2*01 TRAJ42*01 CASSSLTGEQFF TRBV5-4*01 TRBJ2-1*01 HLA-A*02:01 B2M MHCI ILMHCQTTL GAD65 HomoSapiens PMID:34811538 tetramer-sort yes amplicon-seq Naive T cells T1D T1D_4 chip0423_138757 PBMC +9657 CANYTPRGPLTEAFF TRBV28*01 TRBJ1-1*01 HLA-A*01:01 B2M MHCI STNVGSNTY IAPP HomoSapiens PMID:34811538 tetramer-sort yes amplicon-seq transitional T cells between effector and memory populations healthy healthy_3 chip0423_90644 PBMC +9658 CIVREGGGADGLPF TRAV26-1*01 TRAJ45*01 CASRQLGAAQEGTEAFF TRBV11-1*01 TRBJ1-1*01 HLA-B*08:01 B2M MHCI RAKFKQLL BZLF1 EBV PMID:34811538 tetramer-sort yes amplicon-seq effector T cells T1D T1D_4 chip0423_827493 PBMC +9659 CAADSGYALNF TRAV13-2*01 TRAJ41*01 HLA-A*01:01 B2M MHCI CTELKLSDY NP InfluenzaA PMID:34811538 tetramer-sort yes amplicon-seq effector T cells healthy healthy_3 chip0423_768729 PBMC +9660 CASSPQEGPTYEQYF TRBV9*01 TRBJ2-7*01 HLA-A*01:01 B2M MHCI STNVGSNTY IAPP HomoSapiens PMID:34811538 tetramer-sort yes amplicon-seq Naive T cells T1D T1D_5 chip0423_604859 PBMC +9661 CILPLAGGTSYGKLTF TRAV26-2*01 TRAJ52*01 CASSLGQAYEQYF TRBV7-8*01 TRBJ2-7*01 HLA-B*08:01 B2M MHCI FLRGRAYGL EBNA3A EBV PMID:34811538 tetramer-sort yes amplicon-seq effector T cells T1D T1D_6 chip0423_233757 PBMC +9662 CASTTGYNSPLHF TRAV39*01 TRAJ34*01 CASTTGYNSPLHF TRBV27*01 TRBJ1-6*01 HLA-A*02:01 B2M MHCI EAAGIGILTV MART1 HomoSapiens PMID:34811538 tetramer-sort yes amplicon-seq Naive T cells healthy healthy_3 chip0423_124102 PBMC +9663 RVVLat?ARLLF TRAV8-2*01 TRAJ31*01 CASSQGGSGAQETQYF TRBV4-2*01 TRBJ2-5*01 HLA-A*02:01 B2M MHCI YVLDHLIVV BRLF1 EBV PMID:34811538 tetramer-sort yes amplicon-seq effector memory T cells healthy healthy_4 chip0423_749292 PBMC +9664 CASSGGHPAYNEQFF TRBV2*01 TRBJ2-1*01 HLA-B*08:01 B2M MHCI RAKFKQLL BZLF1 EBV PMID:34811538 tetramer-sort yes amplicon-seq effector memory T cells T1D T1D_6 chip0423_795710 PBMC +9665 CAEMEPSSDRLLF TRAV13-2*01 TRAJ50*01 HLA-B*08:01 B2M MHCI RAKFKQLL BZLF1 EBV PMID:34811538 tetramer-sort yes amplicon-seq effector T cells T1D T1D_5 chip0423_435918 PBMC +9666 CASSYGTGLSDTQYF TRBV13*01 TRBJ2-3*01 HLA-A*02:01 B2M MHCI YLLPGWKL VP3 RotavirusA PMID:34811538 tetramer-sort yes amplicon-seq Naive T cells T1D T1D_6 chip0423_150670 PBMC +9667 CAVERWTNAGKSTF TRAV12-2*01 TRAJ27*01 CASSFGTGDEQFF TRBV27*01 TRBJ2-1*01 HLA-A*02:01 B2M MHCI VVTGVLVYL ZNT8 HomoSapiens PMID:34811538 tetramer-sort yes amplicon-seq Naive T cells T1D T1D_4 chip0423_379275 PBMC +9668 CAAAETSYDKVIF TRAV13-1*01 TRAJ50*01 CAIQLAGGTGELFF TRBV24-1*01 TRBJ2-2*01 HLA-B*08:01 B2M MHCI RAKFKQLL BZLF1 EBV PMID:34811538 tetramer-sort yes amplicon-seq effector memory T cells T1D T1D_5 chip0423_269010 PBMC +9669 CAMSISNFGNEKLTF TRAV12-3*01 TRAJ48*01 CASSSGRPSSYNSPLHF TRBV28*01 TRBJ1-6*01 HLA-A*02:01 B2M MHCI LLAGIGTVPI PGT HomoSapiens PMID:34811538 tetramer-sort yes amplicon-seq Naive T cells healthy healthy_3 chip0423_823265 PBMC +9670 CASSQDSHSAYEQYF TRBV4-1*01 TRBJ2-7*01 HLA-B*08:01 B2M MHCI RAKFKQLL BZLF1 EBV PMID:34811538 tetramer-sort yes amplicon-seq effector memory T cells T1D T1D_5 chip0423_809799 PBMC +9671 CASSLLGEDQPQHF TRBV7-9*01 TRBJ1-5*01 HLA-B*08:01 B2M MHCI RAKFKQLL BZLF1 EBV PMID:34811538 tetramer-sort yes amplicon-seq effector memory T cells T1D T1D_5 chip0423_763100 PBMC +9672 CASMPGSYNEQFF TRBV7-9*01 TRBJ2-1*01 HLA-B*08:01 B2M MHCI YAKWKLCSA ZNT8 HomoSapiens PMID:34811538 tetramer-sort yes amplicon-seq Naive T cells T1D T1D_5 chip0423_618724 PBMC +9673 CASSPEFSYNSPLHF TRBV9*01 TRBJ1-6*01 HLA-B*08:01 B2M MHCI MALWMRLL INS HomoSapiens PMID:34811538 tetramer-sort yes amplicon-seq Naive T cells T1D T1D_6 chip0423_70856 PBMC +9674 RASGAGRETQYF TRBV7-4*01 TRBJ2-5*01 HLA-A*02:01 B2M MHCI LLAGIGTVPI PGT HomoSapiens PMID:34811538 tetramer-sort yes amplicon-seq Naive T cells healthy healthy_3 chip0423_877516 PBMC +9675 CAAQETSYDKVIF TRAV13-1*01 TRAJ50*01 CASTQVDRPNYGYTF TRBV7-9*01 TRBJ1-2*01 HLA-B*08:01 B2M MHCI RAKFKQLL BZLF1 EBV PMID:34811538 tetramer-sort yes amplicon-seq effector memory T cells T1D T1D_5 chip0423_695017 PBMC +9676 CASSQDGLAATSTDTQYF TRBV4-1*01 TRBJ2-3*01 HLA-A*01:01 B2M MHCI CTELKLSDY NP InfluenzaA PMID:34811538 tetramer-sort yes amplicon-seq transitional T cells between effector and memory populations healthy healthy_3 chip0423_674506 PBMC +9678 CAALETSYDKVIF TRAV13-1*01 TRAJ50*01 CASSPDGSTGELFF TRBV12-3*01,TRBV12-4*01 TRBJ2-2*01 HLA-B*08:01 B2M MHCI RAKFKQLL BZLF1 EBV PMID:34811538 tetramer-sort yes amplicon-seq effector memory T cells T1D T1D_5 chip0423_749895 PBMC +9679 CAVSDGEGAQKLVF TRAV8-6*01 TRAJ54*01 CASSLTVLAGPNTEAFF TRBV7-3*01 TRBJ1-1*01 HLA-B*08:01 B2M MHCI RAKFKQLL BZLF1 EBV PMID:34811538 tetramer-sort yes amplicon-seq effector memory T cells T1D T1D_4 chip0423_650980 PBMC +9680 CASSPEGHRPYEQYF TRBV9*01 TRBJ2-7*01 HLA-B*08:01 B2M MHCI EVKEKGMAA GAD2 HomoSapiens PMID:34811538 tetramer-sort yes amplicon-seq Naive T cells T1D T1D_5 chip0423_264483 PBMC +9681 CILPLAGGTSYGKLTF TRAV26-2*01 TRAJ52*01 CASSLGQAYEQYF TRBV7-8*01 TRBJ2-7*01 HLA-B*08:01 B2M MHCI FLRGRAYGL EBNA3A EBV PMID:34811538 tetramer-sort yes amplicon-seq central memory T cells T1D T1D_6 chip0423_620422 PBMC +9682 WAPQPGag??acDYQFPV TRAV9-2*01 TRAJ20*01 HLA-A*02:01 B2M MHCI SLYNTVATLY GAG HIV-1 PMID:34811538 tetramer-sort yes amplicon-seq Naive T cells T1D T1D_4 chip0423_563737 PBMC +9683 CAVEVDKLIF TRAV41*01 TRAJ34*01 CASSLWYRVETQYF TRBV5-6*01 TRBJ2-5*01 HLA-A*01:01 B2M MHCI CTELKLSDY NP InfluenzaA PMID:34811538 tetramer-sort yes amplicon-seq transitional T cells between effector and memory populations healthy healthy_3 chip0423_534229 PBMC +9684 STPATStc??ccCHPSSF TRAV26-1*01 TRAJ49*01 CSAGRDGTNEKLFF TRBV29-1*01 TRBJ1-4*01 HLA-A*02:01 B2M MHCI GLCTLVAML BLMF1 EBV PMID:34811538 tetramer-sort yes amplicon-seq effector memory T cells T1D T1D_6 chip0423_871374 PBMC +9685 CVVNSGTYKYIF TRAV12-1*01 TRAJ40*01 HLA-B*08:01 B2M MHCI CPLSKILL LMP2A EBV PMID:34811538 tetramer-sort yes amplicon-seq Naive T cells T1D T1D_5 chip0423_622172 PBMC +9686 CAASEGGADGLTF TRAV13-1*01 TRAJ45*01 CASSHRRGGVYQETQYF TRBV9*01 TRBJ2-5*01 HLA-B*08:01 B2M MHCI RAKFKQLL BZLF1 EBV PMID:34811538 tetramer-sort yes amplicon-seq effector T cells T1D T1D_4 chip0423_567932 PBMC +9687 CILPLAGGTSYGKLTF TRAV4*01,TRAV26-2*01 TRAJ52*01 CASSLGQAYEQYF TRBV7-8*01 TRBJ2-7*01 HLA-B*08:01 B2M MHCI FLRGRAYGL EBNA3A EBV PMID:34811538 tetramer-sort yes amplicon-seq effector memory T cells T1D T1D_6 chip0423_481687 PBMC +9688 CASSHRVDEQYF TRBV7-9*01 TRBJ2-7*01 HLA-B*08:01 B2M MHCI FLRGRAYGL EBNA3A EBV PMID:34811538 tetramer-sort yes amplicon-seq Naive T cells T1D T1D_4 chip0423_422268 PBMC +9689 CAVCGSEKLVF TRAV20*01 TRAJ57*01 HLA-A*02:01 B2M MHCI LLAGIGTVPI PGT HomoSapiens PMID:34811538 tetramer-sort yes amplicon-seq Naive T cells T1D T1D_6 chip0423_156980 PBMC +9690 CASSMFGVNTEAFF TRBV19*01 TRBJ1-1*01 HLA-A*02:01 B2M MHCI VVTGVLVYL ZNT8 HomoSapiens PMID:34811538 tetramer-sort yes amplicon-seq effector T cells T1D T1D_4 chip0423_787261 PBMC +9691 CAVTSRGADKLIF TRAV12-2*01 TRAJ34*01 CASLRGGQVSYEQYF TRBV28*01 TRBJ2-7*01 HLA-A*02:01 B2M MHCI LLAGIGTVPI PGT HomoSapiens PMID:34811538 tetramer-sort yes amplicon-seq Naive T cells T1D T1D_4 chip0423_185872 PBMC +9692 CAGGETSYDKVIF TRAV13-1*01 TRAJ50*01 HLA-B*08:01 B2M MHCI RAKFKQLL BZLF1 EBV PMID:34811538 tetramer-sort yes amplicon-seq effector T cells T1D T1D_5 chip0423_793598 PBMC +9695 CASSQDGYGGDQPQHF TRBV4-1*01 TRBJ1-5*01 HLA-A*01:01 B2M MHCI CTELKLSDY NP InfluenzaA PMID:34811538 tetramer-sort yes amplicon-seq transitional T cells between effector and memory populations healthy healthy_3 chip0423_248533 PBMC +9696 CASSDIREGPGAALF TRBV10-2*01 TRBJ1-1*01 HLA-B*08:01 B2M MHCI QAKWRLQTL EBNA3A EBV PMID:34811538 tetramer-sort yes amplicon-seq central memory T cells T1D T1D_6 chip0423_756020 PBMC +9697 CAATEYTH??gGGGNKLTF TRAV13-1*01 TRAJ10*01 CASSESGLGGELFF TRBV6-1*01 TRBJ2-2*01 HLA-A*02:01 B2M MHCI ALAGIGILTV MART1 HomoSapiens PMID:34811538 tetramer-sort yes amplicon-seq Naive T cells healthy healthy_3 chip0423_715627 PBMC +9698 CGTEKDNFNKFYF TRAV30*01 TRAJ21*01 CASSFAPPRSSYNEQFF TRBV27*01 TRBJ2-1*01 HLA-A*01:01 B2M MHCI CTELKLSDY NP InfluenzaA PMID:34811538 tetramer-sort yes amplicon-seq Naive T cells healthy healthy_3 chip0423_622549 PBMC +9699 CASSLLSADSPLHF TRBV7-8*01 TRBJ1-6*01 HLA-A*02:01 B2M MHCI LLAGIGTVPI PGT HomoSapiens PMID:34811538 tetramer-sort yes amplicon-seq central memory T cells healthy healthy_4 chip0423_537685 PBMC +9700 CASSLEMTSTDTQYF TRBV11-1*01 TRBJ2-3*01 HLA-A*02:01 B2M MHCI LLAGIGTVPI PGT HomoSapiens PMID:34811538 tetramer-sort yes amplicon-seq Naive T cells T1D T1D_6 chip0423_814058 PBMC +9701 FAMSASTFVLGDFAF TRAV12-3*01 TRAJ48*01,TRAJ44*01 CASSHKGFSYNEQFF TRBV4-3*01 TRBJ2-1*01 HLA-A*02:01 B2M MHCI LLAGIGTVPI PGT HomoSapiens PMID:34811538 tetramer-sort yes amplicon-seq Naive T cells T1D T1D_4 chip0423_539242 PBMC +9702 CASSPLGSLNTEAFF TRBV7-9*01 TRBJ1-1*01 HLA-B*08:01 B2M MHCI RAKFKQLL BZLF1 EBV PMID:34811538 tetramer-sort yes amplicon-seq effector memory T cells T1D T1D_5 chip0423_461057 PBMC +9703 CALNTNAGKSTF TRAV24*01 TRAJ27*01 CASSWGSMNTEAFF TRBV27*01 TRBJ1-1*01 HLA-A*02:01 B2M MHCI VIVMLTPLV PTPRN HomoSapiens PMID:34811538 tetramer-sort yes amplicon-seq Naive T cells T1D T1D_4 chip0423_167526 PBMC +9704 CAVEKKNTDKLIF TRAV21*01 TRAJ34*01 HLA-B*08:01 B2M MHCI RAKFKQLL BZLF1 EBV PMID:34811538 tetramer-sort yes amplicon-seq effector T cells healthy healthy_4 chip0423_653704 PBMC +9705 CILSGGSRLTF TRAV26-2*01 TRAJ10*01 CSVSTGLSYEQYF TRBV29-1*01 TRBJ2-7*01 HLA-A*02:01 B2M MHCI VAANIVLTV ZNT8 HomoSapiens PMID:34811538 tetramer-sort yes amplicon-seq Naive T cells healthy healthy_3 chip0423_444992 PBMC +9707 CAAPGQNRDDKIIF TRAV25*01 TRAJ30*01 CASSPPQGRGGYTF TRBV18*01 TRBJ1-2*01 HLA-A*02:01 B2M MHCI LLAGIGTVPI PGT HomoSapiens PMID:34811538 tetramer-sort yes amplicon-seq Naive T cells T1D T1D_6 chip0423_128627 PBMC +9708 CSARPDRGREGYTF TRBV20-1*01 TRBJ1-2*01 HLA-A*02:01 B2M MHCI SISVLISAL ZNT8 HomoSapiens PMID:34811538 tetramer-sort yes amplicon-seq natural killer-like T cells healthy healthy_3 chip0423_745390 PBMC +9709 CASSWGQGPTYEQYF TRBV4-1*01 TRBJ2-7*01 HLA-B*08:01 B2M MHCI RAKFKQLL BZLF1 EBV PMID:34811538 tetramer-sort yes amplicon-seq effector memory T cells healthy healthy_4 chip0423_594886 PBMC +9710 CASSFTVLAGPNTEAFF TRBV7-3*01 TRBJ1-1*01 HLA-B*08:01 B2M MHCI RAKFKQLL BZLF1 EBV PMID:34811538 tetramer-sort yes amplicon-seq effector T cells T1D T1D_4 chip0423_310575 PBMC +9711 CASSQDPSGALHSPLHL TRBV3-1*01 TRBJ1-6*01 HLA-A*02:01 B2M MHCI LLAGIGTVPI PGT HomoSapiens PMID:34811538 tetramer-sort yes amplicon-seq Naive T cells T1D T1D_4 chip0423_497559 PBMC +9713 CASSQDGLAATSTDTQYF TRBV4-1*01 TRBJ2-3*01 HLA-A*01:01 B2M MHCI CTELKLSDY NP InfluenzaA PMID:34811538 tetramer-sort yes amplicon-seq transitional T cells between effector and memory populations healthy healthy_3 chip0423_732639 PBMC +9714 CASKFRPGTDTQYF TRBV19*01 TRBJ2-3*01 HLA-B*08:01 B2M MHCI TLKKMREI GAD2 HomoSapiens PMID:34811538 tetramer-sort yes amplicon-seq Naive T cells T1D T1D_6 chip0423_154368 PBMC +9715 CAEGFQQLVF TRAV13-2*01 TRAJ8*01 CASSLRGRDTQYF TRBV27*01 TRBJ2-3*01 HLA-B*08:01 B2M MHCI NLIFKWIL G6PC2 HomoSapiens PMID:34811538 tetramer-sort yes amplicon-seq Naive T cells T1D T1D_6 chip0423_522559 PBMC +9716 CAGGAGRRALTF TRAV12-2*01 TRAJ5*01 CAWARGTGELFF TRBV12-3*01,TRBV12-4*01 TRBJ2-2*01 HLA-A*02:01 B2M MHCI ALAGIGILTV MART1 HomoSapiens PMID:34811538 tetramer-sort yes amplicon-seq Naive T cells T1D T1D_6 chip0423_485133 PBMC +9717 CAMISDSNYQLIW TRAV12-3*01 TRAJ33*01 CASSPAPAHTF TRBV7-9*01 TRBJ1-2*01 HLA-A*02:01 B2M MHCI RLLPLLALLAL INS HomoSapiens PMID:34811538 tetramer-sort yes amplicon-seq Naive T cells T1D T1D_4 chip0423_292912 PBMC +9718 CALRDMEYGNKLVF TRAV16*01 TRAJ47*01 CASSLIVSGGANEQFF TRBV7-3*01 TRBJ2-1*01 HLA-B*08:01 B2M MHCI RAKFKQLL BZLF1 EBV PMID:34811538 tetramer-sort yes amplicon-seq effector T cells healthy healthy_4 chip0423_848434 PBMC +9719 CANSFTSGTDPELFF TRBV7-9*01 TRBJ2-2*01 HLA-B*08:01 B2M MHCI RAKFKQLL BZLF1 EBV PMID:34811538 tetramer-sort yes amplicon-seq effector T cells T1D T1D_5 chip0423_739019 PBMC +9720 CASSGRVEEYGGELFF TRBV27*01 TRBJ2-2*01 HLA-B*08:01 B2M MHCI RAKFKQLL BZLF1 EBV PMID:34811538 tetramer-sort yes amplicon-seq effector memory T cells T1D T1D_5 chip0423_670485 PBMC +9721 CAYRLDDKIIF TRAV38-1*01 TRAJ30*01 CASSDTGVTMNTEAFF TRBV2*01 TRBJ1-1*01 HLA-A*02:01 B2M MHCI ALGIGILTV MART1 HomoSapiens PMID:34811538 tetramer-sort yes amplicon-seq Naive T cells T1D T1D_4 chip0423_520116 PBMC +9722 CASSLTVLAGPNTEAFF TRBV7-3*01 TRBJ1-1*01 HLA-B*08:01 B2M MHCI RAKFKQLL BZLF1 EBV PMID:34811538 tetramer-sort yes amplicon-seq effector memory T cells T1D T1D_4 chip0423_258619 PBMC +9723 CAAMETSYDKVIF TRAV13-1*01 TRAJ50*01 CATRDHRDGTGELFF TRBV24-1*01 TRBJ2-2*01 HLA-B*08:01 B2M MHCI RAKFKQLL BZLF1 EBV PMID:34811538 tetramer-sort yes amplicon-seq effector T cells T1D T1D_5 chip0423_233045 PBMC +9724 CAVRDRGTGRRALTF TRAV1-1*01 TRAJ5*01 HLA-A*02:01 B2M MHCI LLAGIGTVPI PGT HomoSapiens PMID:34811538 tetramer-sort yes amplicon-seq Naive T cells T1D T1D_6 chip0423_564634 PBMC +9725 CASSLVDRPYEQYF TRBV7-9*01 TRBJ2-7*01 HLA-B*08:01 B2M MHCI RAKFKQLL BZLF1 EBV PMID:34811538 tetramer-sort yes amplicon-seq effector memory T cells T1D T1D_5 chip0423_251234 PBMC +9726 CAVRDQDYGGTTNKLIF TRAV1-1*01 TRAJ32*01 CASSFVDNEQFF TRBV12-3*01,TRBV12-4*01 TRBJ2-1*01 HLA-A*02:01 B2M MHCI LVGPTPVNI POL HIV-1 PMID:34811538 tetramer-sort yes amplicon-seq Naive T cells T1D T1D_6 chip0423_48380 PBMC +9727 CAATETSYDKVIF TRAV13-1*01 TRAJ50*01 CASSPPGRNEKLFF TRBV12-3*01,TRBV12-4*01 TRBJ1-4*01 HLA-B*08:01 B2M MHCI RAKFKQLL BZLF1 EBV PMID:34811538 tetramer-sort yes amplicon-seq effector memory T cells T1D T1D_5 chip0423_54377 PBMC +9728 GVGSENSYDKVIV TRAV13-1*01 TRAJ50*01 HLA-B*08:01 B2M MHCI RAKFKQLL BZLF1 EBV PMID:34811538 tetramer-sort yes amplicon-seq effector T cells T1D T1D_5 chip0423_869575 PBMC +9729 CAASETSYDKVIF TRAV13-1*01 TRAJ50*01 CASSSTGGGDQPQHF TRBV7-9*01 TRBJ1-5*01 HLA-B*08:01 B2M MHCI RAKFKQLL BZLF1 EBV PMID:34811538 tetramer-sort yes amplicon-seq effector memory T cells T1D T1D_4 chip0423_661874 PBMC +9730 CALIFFW??tGYSKLII TRAV19*01 TRAJ4*01 HLA-A*01:01 B2M MHCI CTELKLSDY NP InfluenzaA PMID:34811538 tetramer-sort yes amplicon-seq transitional T cells between effector and memory populations healthy healthy_3 chip0423_658080 PBMC +9731 CASSYSAASSYNSPLHF TRBV6-5*01 TRBJ1-6*01 HLA-A*02:01 B2M MHCI LLAGIGTVPI PGT HomoSapiens PMID:34811538 tetramer-sort yes amplicon-seq Naive T cells T1D T1D_6 chip0423_860208 PBMC +9733 CAVLQDSPSQFIW TRAV12-2*01 TRAJ33*01 CASSDDGMNTEAFF TRBV10-2*01 TRBJ1-1*01 HLA-A*02:01 B2M MHCI CLGGLLTMV LMP2A EBV PMID:34811538 tetramer-sort yes amplicon-seq central memory T cells T1D T1D_4 chip0423_640705 PBMC +9734 CASSPLGSNEKLFF TRBV7-9*01 TRBJ1-4*01 HLA-B*08:01 B2M MHCI RAKFKQLL BZLF1 EBV PMID:34811538 tetramer-sort yes amplicon-seq effector memory T cells T1D T1D_5 chip0423_485372 PBMC +9735 CARSAMt?gGSTPPL TRAV14/DV4*01 TRAJ11*01 CASSEMWGAPLHF TRBV2*01 TRBJ1-6*01 HLA-A*01:01 B2M MHCI CTELKLSDY NP InfluenzaA PMID:34811538 tetramer-sort yes amplicon-seq transitional T cells between effector and memory populations healthy healthy_3 chip0423_196515 PBMC +9736 CASSYSSTGEYF TRBV6-2*01,TRBV6-3*01 TRBJ2-7*01 HLA-A*02:01 B2M MHCI YLLEMLWRL LMP1 EBV PMID:34811538 tetramer-sort yes amplicon-seq central memory T cells T1D T1D_4 chip0423_50120 PBMC +9737 CASSTVGVGKLFF TRBV4-1*01 TRBJ1-4*01 HLA-B*08:01 B2M MHCI QAKWRLQTL EBNA3A EBV PMID:34811538 tetramer-sort yes amplicon-seq Naive T cells T1D T1D_6 chip0423_832491 PBMC +9738 CARTISNFGPALLAF TRAV12-3*01 TRAJ48*01 CASVGDTPYF TRBV28*01 TRBJ2-3*01 HLA-A*02:01 B2M MHCI LLAGIGTVPI PGT HomoSapiens PMID:34811538 tetramer-sort yes amplicon-seq Naive T cells T1D T1D_6 chip0423_399325 PBMC +9739 CAVNSGNTPLVF TRAV1-2*01 TRAJ29*01 CASSQVNNPGDGYTF TRBV14*01 TRBJ1-2*01 HLA-B*08:01 B2M MHCI QAKWRLQTL EBNA3A EBV PMID:34811538 tetramer-sort yes amplicon-seq effector memory T cells T1D T1D_4 chip0423_3079 PBMC +9740 CAMSISNFGNEKLTF TRAV12-3*01 TRAJ48*01 CASSPSLRDSLNYGYTF TRBV12-3*01,TRBV12-4*01 TRBJ1-2*01 HLA-A*02:01 B2M MHCI LLAGIGTVPI PGT HomoSapiens PMID:34811538 tetramer-sort yes amplicon-seq Naive T cells T1D T1D_4 chip0423_800641 PBMC +9741 CATTTWGELGYGYTF TRBV28*01 TRBJ1-2*01 HLA-A*02:01 B2M MHCI YVLDHLIVV BRLF1 EBV PMID:34811538 tetramer-sort yes amplicon-seq Naive T cells T1D T1D_4 chip0423_450709 PBMC +9742 CASSIRSSYEQYF TRBV19*01 TRBJ2-7*01 HLA-A*02:01 B2M MHCI GILGFVFTL M1 InfluenzaA PMID:34811538 tetramer-sort yes amplicon-seq transitional T cells between effector and memory populations T1D T1D_6 chip0423_387240 PBMC +9743 CASSPKTGAGLAGDEQFF TRBV11-1*01 TRBJ2-1*01 HLA-A*01:01 B2M MHCI CTELKLSDY NP InfluenzaA PMID:34811538 tetramer-sort yes amplicon-seq transitional T cells between effector and memory populations healthy healthy_3 chip0423_257519 PBMC +9744 CAASETSYDKVIF TRAV13-1*01 TRAJ50*01 CASSLISFGT??gT*SGANVLTF TRBV7-3*01 TRBJ2-6*01 HLA-B*08:01 B2M MHCI RAKFKQLL BZLF1 EBV PMID:34811538 tetramer-sort yes amplicon-seq effector memory T cells healthy healthy_4 chip0423_712165 PBMC +9745 CASRVGREPTGELFF TRBV3-1*01 TRBJ2-2*01 HLA-B*08:01 B2M MHCI RAKFKQLL BZLF1 EBV PMID:34811538 tetramer-sort yes amplicon-seq effector memory T cells healthy healthy_4 chip0423_705160 PBMC +9746 CAMSASNFGNEKLTF TRAV12-3*01 TRAJ48*01 CASSQDPDYSEGETQYF TRBV14*01 TRBJ2-5*01 HLA-A*02:01 B2M MHCI LLAGIGTVPI PGT HomoSapiens PMID:34811538 tetramer-sort yes amplicon-seq Naive T cells healthy healthy_4 chip0423_321193 PBMC +9747 CASSSGQAYEQYF TRBV7-8*01 TRBJ2-7*01 HLA-B*08:01 B2M MHCI FLRGRAYGL EBNA3A EBV PMID:34811538 tetramer-sort yes amplicon-seq effector memory T cells T1D T1D_4 chip0423_226205 PBMC +9748 CATLISNFGNEKLTF TRAV12-3*01 TRAJ48*01 CASSSILTATENTEAFF TRBV11-2*01 TRBJ1-1*01 HLA-A*02:01 B2M MHCI LLAGIGTVPI PGT HomoSapiens PMID:34811538 tetramer-sort yes amplicon-seq Naive T cells T1D T1D_6 chip0423_693665 PBMC +9750 CVVNGENARLMF TRAV12-1*01 TRAJ31*01 CASSEMWGAPLHF TRBV2*01 TRBJ1-6*01 HLA-A*01:01 B2M MHCI CTELKLSDY NP InfluenzaA PMID:34811538 tetramer-sort yes amplicon-seq transitional T cells between effector and memory populations healthy healthy_3 chip0423_599877 PBMC +9752 CASSSGQAYEQYF TRBV7-8*01 TRBJ2-7*01 HLA-B*08:01 B2M MHCI FLRGRAYGL EBNA3A EBV PMID:34811538 tetramer-sort yes amplicon-seq transitional T cells between effector and memory populations healthy healthy_4 chip0423_118144 PBMC +9754 CASSLSLNQPQHF TRBV3-1*01 TRBJ1-5*01 HLA-B*08:01 B2M MHCI YAFLHATDL GAD2 HomoSapiens PMID:34811538 tetramer-sort yes amplicon-seq Naive T cells T1D T1D_6 chip0423_157996 PBMC +9755 CAASMGYGNKLVF TRAV13-1*01 TRAJ47*01 CASSQGFRTPEGGYTF TRBV3-1*01 TRBJ1-2*01 HLA-A*01:01 B2M MHCI CTELKLSDY NP InfluenzaA PMID:34811538 tetramer-sort yes amplicon-seq effector T cells healthy healthy_3 chip0423_15633 PBMC +9756 CAVEVHNNNDMRL TRAV36/DV7*01 TRAJ43*01 HLA-A*01:01 B2M MHCI PTEKGANEY ZNT8 HomoSapiens PMID:34811538 tetramer-sort yes amplicon-seq Naive T cells healthy healthy_3 chip0423_765805 PBMC +9758 CASSLNPVLRLDTQYF TRBV28*01 TRBJ2-3*01 HLA-B*08:01 B2M MHCI QAKWRLQTL EBNA3A EBV PMID:34811538 tetramer-sort yes amplicon-seq effector memory T cells T1D T1D_4 chip0423_420288 PBMC +9759 RILPLAGGTSYGKLTF TRAV4*01,TRAV26-2*01 TRAJ52*01 CASSSGQAYEQYF TRBV7-8*01 TRBJ2-7*01 HLA-B*08:01 B2M MHCI FLRGRAYGL EBNA3A EBV PMID:34811538 tetramer-sort yes amplicon-seq effector memory T cells healthy healthy_4 chip0423_520036 PBMC +9760 CADYSSASKIIF TRAV1-1*01 TRAJ3*01 CASSQDGLAATSTDTQYF TRBV4-1*01 TRBJ2-3*01 HLA-A*01:01 B2M MHCI CTELKLSDY NP InfluenzaA PMID:34811538 tetramer-sort yes amplicon-seq transitional T cells between effector and memory populations healthy healthy_3 chip0423_338109 PBMC +9761 CAGALa?cNDMRS TRAV27*01 TRAJ43*01 CASSEPGRVDTQYF TRBV10-2*01 TRBJ2-3*01 HLA-A*02:01 B2M MHCI LLIDLTSFL ZNT8 HomoSapiens PMID:34811538 tetramer-sort yes amplicon-seq central memory T cells healthy healthy_3 chip0423_537472 PBMC +9762 CGANFPPFYF TRAV34*01 TRAJ21*01 CASSPSLGEYNEQFF TRBV18*01 TRBJ2-1*01 HLA-B*08:01 B2M MHCI RAKFKQLL BZLF1 EBV PMID:34811538 tetramer-sort yes amplicon-seq effector memory T cells T1D T1D_4 chip0423_403185 PBMC +9763 CILPLEAGTRSGRLTL TRAV26-2*01 TRAJ52*01 CASSSGQAYEQYF TRBV7-8*01 TRBJ2-7*01 HLA-B*08:01 B2M MHCI FLRGRAYGL EBNA3A EBV PMID:34811538 tetramer-sort yes amplicon-seq effector memory T cells T1D T1D_4 chip0423_386474 PBMC +9764 CAMRRDDDYKLSF TRAV14/DV4*01 TRAJ20*01 CASSVGGGLYNEQFF TRBV9*01 TRBJ2-1*01 HLA-A*02:01 B2M MHCI ALTAVAEEV PTPRN HomoSapiens PMID:34811538 tetramer-sort yes amplicon-seq Naive T cells T1D T1D_6 chip0423_367549 PBMC +9765 CASLLAGGTGALFF TRBV24-1*01 TRBJ2-2*01 HLA-B*08:01 B2M MHCI RAKFKQLL BZLF1 EBV PMID:34811538 tetramer-sort yes amplicon-seq effector memory T cells T1D T1D_5 chip0423_352223 PBMC +9766 CSPKTGLNTQYF TRBV20-1*01 TRBJ2-3*01 HLA-A*02:01 B2M MHCI ALAGIGILTV MART1 HomoSapiens PMID:34811538 tetramer-sort yes amplicon-seq Naive T cells healthy healthy_3 chip0423_745350 PBMC +9767 CASSLSRAYEQYF TRBV7-2*01 TRBJ2-7*01 HLA-B*08:01 B2M MHCI QAKWRLQTL EBNA3A EBV PMID:34811538 tetramer-sort yes amplicon-seq Naive T cells T1D T1D_6 chip0423_91978 PBMC +9768 CASSQGQGNEQYF TRBV4-1*01 TRBJ2-7*01 HLA-A*02:01 B2M MHCI LLAGIGTVPI PGT HomoSapiens PMID:34811538 tetramer-sort yes amplicon-seq Naive T cells T1D T1D_6 chip0423_22515 PBMC +9769 CASSMMGSGYNEQFF TRBV19*01 TRBJ2-1*01 HLA-A*02:01 B2M MHCI GILGFVFTL M1 InfluenzaA PMID:34811538 tetramer-sort yes amplicon-seq central memory T cells healthy healthy_4 chip0423_660989 PBMC +9770 CASSAVTGGQTGELFF TRBV7-6*01 TRBJ2-2*01 HLA-B*08:01 B2M MHCI LNHLKATPI IAPP HomoSapiens PMID:34811538 tetramer-sort yes amplicon-seq Naive T cells T1D T1D_5 chip0423_308655 PBMC +9771 CASSLEQAYEQYF TRBV7-8*01 TRBJ2-7*01 HLA-A*02:01 B2M MHCI LLAGIGTVPI PGT HomoSapiens PMID:34811538 tetramer-sort yes amplicon-seq Naive T cells healthy healthy_4 chip0423_835400 PBMC +9772 CSAEHRVTYNEQFF TRBV20-1*01 TRBJ2-1*01 HLA-A*01:01 B2M MHCI CTELKLSDY NP InfluenzaA PMID:34811538 tetramer-sort yes amplicon-seq Naive T cells T1D T1D_5 chip0423_759098 PBMC +9773 RAIRERARRASTLLF TRAV14/DV4*01 TRAJ3*01 CRVGTSGGDTF TRBV29-1*01 TRBJ1-2*01 HLA-B*08:01 B2M MHCI RAKFKQLL BZLF1 EBV PMID:34811538 tetramer-sort yes amplicon-seq effector memory T cells T1D T1D_5 chip0423_732879 PBMC +9774 CAEPTRNFGNEKLTF TRAV13-2*01 TRAJ48*01 CASSQVRGGYEQYF TRBV3-1*01 TRBJ2-7*01 HLA-B*08:01 B2M MHCI RAKFKQLL BZLF1 EBV PMID:34811538 tetramer-sort yes amplicon-seq effector memory T cells T1D T1D_6 chip0423_587373 PBMC +9775 CASSLIIVAGSSTDTQYF TRBV7-8*01 TRBJ2-3*01 HLA-A*02:01 B2M MHCI LLAGIGTVPI PGT HomoSapiens PMID:34811538 tetramer-sort yes amplicon-seq Naive T cells T1D T1D_4 chip0423_706522 PBMC +9776 CAERETSYDKVIF TRAV13-2*01 TRAJ50*01 CAWNRDRNTEAFF TRBV30*01 TRBJ1-1*01 HLA-B*08:01 B2M MHCI MMIARFKM GAD2 HomoSapiens PMID:34811538 tetramer-sort yes amplicon-seq Naive T cells T1D T1D_5 chip0423_567411 PBMC +9777 CASIKVVGGRDTQYF TRBV28*01 TRBJ2-3*01 HLA-A*02:01 B2M MHCI KLQVFLIVL IAPP HomoSapiens PMID:34811538 tetramer-sort yes amplicon-seq Naive T cells healthy healthy_3 chip0423_103359 PBMC +9778 CASSSLSGGAGNEQFF TRBV7-9*01 TRBJ2-1*01 HLA-B*08:01 B2M MHCI RAKFKQLL BZLF1 EBV PMID:34811538 tetramer-sort yes amplicon-seq effector memory T cells T1D T1D_5 chip0423_865689 PBMC +9779 CAGALGGGSQGNLIF TRAV27*01 TRAJ42*01 CASSIRSGYEQFF TRBV19*01 TRBJ2-1*01 HLA-A*02:01 B2M MHCI GILGFVFTL M1 InfluenzaA PMID:34811538 tetramer-sort yes amplicon-seq transitional T cells between effector and memory populations healthy healthy_3 chip0423_820862 PBMC +9780 CAVRRDDKIIF TRAV12-2*01 TRAJ30*01 CASSEPGRVDTQYF TRBV10-2*01 TRBJ2-3*01 HLA-A*02:01 B2M MHCI LLIDLTSFL ZNT8 HomoSapiens PMID:34811538 tetramer-sort yes amplicon-seq central memory T cells healthy healthy_3 chip0423_428599 PBMC +9781 CADSCGASRVVF TRAV1-1*01 TRAJ3*01 CASQLAGGTGELFF TRBV24-1*01 TRBJ2-2*01 HLA-A*01:01 B2M MHCI CTELKLSDY NP InfluenzaA PMID:34811538 tetramer-sort yes amplicon-seq transitional T cells between effector and memory populations healthy healthy_3 chip0423_595777 PBMC +9783 CAASETSYNKVIF TRAV13-1*01 TRAJ50*01 CASSLLGENEKLFF TRBV7-9*01 TRBJ1-4*01 HLA-B*08:01 B2M MHCI RAKFKQLL BZLF1 EBV PMID:34811538 tetramer-sort yes amplicon-seq effector memory T cells T1D T1D_5 chip0423_61442 PBMC +9784 CAMSLSNFGNEKLTF TRAV12-3*01 TRAJ48*01 HLA-A*02:01 B2M MHCI LLAGIGTVPI PGT HomoSapiens PMID:34811538 tetramer-sort yes amplicon-seq Naive T cells T1D T1D_6 chip0423_514084 PBMC +9786 CAEMETSYDKVIF TRAV13-2*01 TRAJ50*01 CASSSLSGGAGNEQFF TRBV7-9*01 TRBJ2-1*01 HLA-B*08:01 B2M MHCI RAKFKQLL BZLF1 EBV PMID:34811538 tetramer-sort yes amplicon-seq effector T cells T1D T1D_5 chip0423_606661 PBMC +9787 CASSTLQGTNTEAFF TRBV7-9*01 TRBJ1-1*01 HLA-B*08:01 B2M MHCI RAKFKQLL BZLF1 EBV PMID:34811538 tetramer-sort yes amplicon-seq transitional T cells between effector and memory populations healthy healthy_5 chip0423_699017 PBMC +9788 CAENSGTYKYIF TRAV13-2*01 TRAJ40*01 CASTDTGRGTGELFF TRBV7-3*01 TRBJ2-2*01 HLA-B*08:01 B2M MHCI HLKRNIVV GFAP HomoSapiens PMID:34811538 tetramer-sort yes amplicon-seq Naive T cells T1D T1D_6 chip0423_562507 PBMC +9790 CATSDSWGKLQF TRAV12-2*01 TRAJ24*01 CASSQDLRGEQYF TRBV4-2*01 TRBJ2-7*01 HLA-B*08:01 B2M MHCI CPLSKILL LMP2A EBV PMID:34811538 tetramer-sort yes amplicon-seq effector T cells healthy healthy_5 chip0423_198308 PBMC +9791 CASNLLSQYTGELFF TRBV7-2*01 TRBJ2-2*01 HLA-B*08:01 B2M MHCI RAKFKQLL BZLF1 EBV PMID:34811538 tetramer-sort yes amplicon-seq effector memory T cells T1D T1D_5 chip0423_47010 PBMC +9792 CASSGLAGTYEQYF TRBV27*01 TRBJ2-7*01 HLA-A*02:01 B2M MHCI LLAGIGTVPI PGT HomoSapiens PMID:34811538 tetramer-sort yes amplicon-seq Naive T cells healthy healthy_3 chip0423_19796 PBMC +9793 CSVDWGQGYRYGYTF TRBV29-1*01 TRBJ1-2*01 HLA-A*02:01 B2M MHCI RLLYPDYQI ZNT8 HomoSapiens PMID:34811538 tetramer-sort yes amplicon-seq Naive T cells T1D T1D_6 chip0423_721124 PBMC +9794 CILPLAGGTSYGKLTF TRAV26-2*01 TRAJ52*01 HLA-B*08:01 B2M MHCI FLRGRAYGL EBNA3A EBV PMID:34811538 tetramer-sort yes amplicon-seq transitional T cells between effector and memory populations T1D T1D_6 chip0423_197148 PBMC +9795 CAASTGDTDKLIF TRAV13-1*01 TRAJ34*01 CASSLLAGNTDTQYF TRBV7-6*01 TRBJ2-3*01 HLA-B*08:01 B2M MHCI RAKFKQLL BZLF1 EBV PMID:34811538 tetramer-sort yes amplicon-seq Naive T cells T1D T1D_5 chip0423_171710 PBMC +9796 CNVAGNTEAFF TRBV29-1*01 TRBJ1-1*01 HLA-B*08:01 B2M MHCI RAKFKQLL BZLF1 EBV PMID:34811538 tetramer-sort yes amplicon-seq effector memory T cells T1D T1D_5 chip0423_540133 PBMC +9797 CSVDLPGYTF TRBV29-1*01 TRBJ1-2*01 HLA-A*01:01 B2M MHCI LVSDGGPNLY PB1 InfluenzaA PMID:34811538 tetramer-sort yes amplicon-seq Naive T cells T1D T1D_6 chip0423_463991 PBMC +9798 CASSFLGQMNTEAFF TRAV36/DV7*01,TRAV20*01 TRAJ40*01 CASSFLGQMNTEAFF TRBV7-9*01 TRBJ1-1*01 HLA-B*08:01 B2M MHCI RAKFKQLL BZLF1 EBV PMID:34811538 tetramer-sort yes amplicon-seq effector T cells T1D T1D_5 chip0423_65311 PBMC +9799 CASSFRGYNSPLHF TRBV28*01 TRBJ1-6*01 HLA-B*08:01 B2M MHCI YAKWKLCSA ZNT8 HomoSapiens PMID:34811538 tetramer-sort yes amplicon-seq Naive T cells T1D T1D_4 chip0423_611920 PBMC +9800 CILPLAGGTSYGKLTF TRAV26-2*01 TRAJ52*01 CASSLGQAYEQYF TRBV7-8*01 TRBJ2-7*01 HLA-B*08:01 B2M MHCI FLRGRAYGL EBNA3A EBV PMID:34811538 tetramer-sort yes amplicon-seq effector memory T cells T1D T1D_6 chip0423_17225 PBMC +9801 CASAFSWGETQYF TRBV2*01 TRBJ2-5*01 HLA-A*02:01 B2M MHCI LLAGIGTVPI PGT HomoSapiens PMID:34811538 tetramer-sort yes amplicon-seq Naive T cells healthy healthy_3 chip0423_880981 PBMC +9803 CALRRWLta??gcNTGQLIF TRAV9-2*01 TRAJ37*01 CASSGQGAQYEQYF TRBV2*01 TRBJ2-7*01 HLA-A*02:01 B2M MHCI LLFNILGGWV NS4B HCV PMID:34811538 tetramer-sort yes amplicon-seq Naive T cells healthy healthy_3 chip0423_96367 PBMC +9805 CSAGRDGTNEKLFF TRBV29-1*01 TRBJ1-4*01 HLA-A*02:01 B2M MHCI GLCTLVAML BLMF1 EBV PMID:34811538 tetramer-sort yes amplicon-seq effector T cells T1D T1D_6 chip0423_678746 PBMC +9806 CASSLPPW??gAAYNEQFF TRBV4-3*01 TRBJ2-1*01 HLA-B*08:01 B2M MHCI FLRGRAYGL EBNA3A EBV PMID:34811538 tetramer-sort yes amplicon-seq effector T cells T1D T1D_6 chip0423_366066 PBMC +9807 CASSLLGSDSDTQYF TRBV7-9*01 TRBJ2-3*01 HLA-B*08:01 B2M MHCI RAKFKQLL BZLF1 EBV PMID:34811538 tetramer-sort yes amplicon-seq effector T cells T1D T1D_5 chip0423_242142 PBMC +9809 CAVSDGEGAQKLVF TRAV8-6*01 TRAJ54*01 CASSLTVLAGPNTEAFF TRBV7-3*01 TRBJ1-1*01 HLA-B*08:01 B2M MHCI RAKFKQLL BZLF1 EBV PMID:34811538 tetramer-sort yes amplicon-seq effector T cells T1D T1D_4 chip0423_196803 PBMC +9811 CASSDGTGAYEQYF TRBV12-3*01,TRBV12-4*01 TRBJ2-7*01 HLA-B*08:01 B2M MHCI FLRGRAYGL EBNA3A EBV PMID:34811538 tetramer-sort yes amplicon-seq Naive T cells T1D T1D_4 chip0423_827502 PBMC +9813 CASSWLGDRYNSPLHF TRBV7-9*01 TRBJ1-6*01 HLA-B*08:01 B2M MHCI RAKFKQLL BZLF1 EBV PMID:34811538 tetramer-sort yes amplicon-seq central memory T cells T1D T1D_5 chip0423_375759 PBMC +9814 CASSVLGQGIGMNQPQHF TRBV11-1*01 TRBJ1-5*01 HLA-A*01:01 B2M MHCI ALDIEIATY GFAP HomoSapiens PMID:34811538 tetramer-sort yes amplicon-seq Naive T cells T1D T1D_6 chip0423_348980 PBMC +9815 CSAGRDGTNEKLFF TRBV29-1*01 TRBJ1-4*01 HLA-A*02:01 B2M MHCI GLCTLVAML BLMF1 EBV PMID:34811538 tetramer-sort yes amplicon-seq effector T cells T1D T1D_6 chip0423_117334 PBMC +9816 CASSSGQAYEQYF TRBV7-8*01 TRBJ2-7*01 HLA-B*08:01 B2M MHCI FLRGRAYGL EBNA3A EBV PMID:34811538 tetramer-sort yes amplicon-seq effector memory T cells healthy healthy_4 chip0423_6912 PBMC +9818 CAMSPDYGGSQGNLIF TRAV12-3*01 TRAJ42*01 CATSDLTWGGEQYV TRBV24-1*01 TRBJ2-7*01 HLA-A*01:01 B2M MHCI LTSLTILQLY G6PC2 HomoSapiens PMID:34811538 tetramer-sort yes amplicon-seq Naive T cells T1D T1D_5 chip0423_99935 PBMC +9819 CAPASGGSYIPTF TRAV24*01 TRAJ6*01 CASCRDGTYEQYF TRBV10-3*01 TRBJ2-7*01 HLA-A*01:01 B2M MHCI CTELKLSDY NP InfluenzaA PMID:34811538 tetramer-sort yes amplicon-seq transitional T cells between effector and memory populations healthy healthy_3 chip0423_43511 PBMC +9820 CATDAAHNLFL TRAV17*01 TRAJ36*01 CASSFLEGLGQQYF TRBV11-3*01 TRBJ2-3*01 HLA-A*02:01 B2M MHCI ALGIGILTV MART1 HomoSapiens PMID:34811538 tetramer-sort yes amplicon-seq Naive T cells T1D T1D_6 chip0423_31473 PBMC +9821 CASSPQGQGQDAFF TRBV27*01 TRBJ1-1*01 HLA-B*08:01 B2M MHCI RAKFKQLL BZLF1 EBV PMID:34811538 tetramer-sort yes amplicon-seq effector memory T cells T1D T1D_4 chip0423_868559 PBMC +9823 CAVRPVPGTLIF TRAV21*01 TRAJ37*01 CARTTDGSHAQFF TRBV19*01 TRBJ2-1*01 HLA-A*01:01 B2M MHCI STNVGSNTY IAPP HomoSapiens PMID:34811538 tetramer-sort yes amplicon-seq Naive T cells T1D T1D_5 chip0423_765653 PBMC +9824 CASSLDSYEQYF TRBV5-1*01 TRBJ2-7*01 HLA-A*02:01 B2M MHCI VIVMLTPLV PTPRN HomoSapiens PMID:34811538 tetramer-sort yes amplicon-seq effector memory T cells healthy healthy_3 chip0423_1657 PBMC +9826 CAEIDNDMRF TRAV13-2*01 TRAJ43*01 CASSFMQGGGTQYF TRBV27*01 TRBJ2-5*01 HLA-A*01:01 B2M MHCI VSATAGTTVY GAD2 HomoSapiens PMID:34811538 tetramer-sort yes amplicon-seq Naive T cells healthy healthy_3 chip0423_713393 PBMC +9827 GAGSWQ??cVDKFYF TRAV27*01 TRAJ21*01 CSARSGGTGGAGWDQPQHF TRBV20-1*01 TRBJ1-5*01 HLA-A*02:01 B2M MHCI LLAGIGTVPI PGT HomoSapiens PMID:34811538 tetramer-sort yes amplicon-seq Naive T cells T1D T1D_6 chip0423_794027 PBMC +9828 CAVEDQGRSYNTDKLIF TRAV2*01 TRAJ34*01 CASSLNVGEGAGNTIYF TRBV7-6*01 TRBJ1-3*01 HLA-B*08:01 B2M MHCI RAKFKQLL BZLF1 EBV PMID:34811538 tetramer-sort yes amplicon-seq effector T cells healthy healthy_4 chip0423_265181 PBMC +9829 CASSQEELAGGKQYF TRBV4-2*01 TRBJ2-3*01 HLA-A*02:01 B2M MHCI YLLEMLWRL LMP1 EBV PMID:34811538 tetramer-sort yes amplicon-seq central memory T cells T1D T1D_4 chip0423_649219 PBMC +9830 CASGPTHGYTF TRBV12-5*01 TRBJ1-2*01 HLA-A*01:01 B2M MHCI CTELKLSDY NP InfluenzaA PMID:34811538 tetramer-sort yes amplicon-seq transitional T cells between effector and memory populations healthy healthy_3 chip0423_583715 PBMC +9831 CSAPTSDGYEQYF TRBV20-1*01 TRBJ2-7*01 HLA-B*08:01 B2M MHCI EIYKRWII Gag HIV-1 PMID:34811538 tetramer-sort yes amplicon-seq Naive T cells T1D T1D_6 chip0423_520607 PBMC +9832 CAENGNSGYALNF TRAV5*01,TRAV13-2*01 TRAJ41*01 CASSRGAGADTQYF TRBV18*01 TRBJ2-3*01 HLA-B*08:01 B2M MHCI RAKFKQLL BZLF1 EBV PMID:34811538 tetramer-sort yes amplicon-seq Naive T cells T1D T1D_6 chip0423_498830 PBMC +9833 CAAAETSYDKLIF TRAV13-1*01 TRAJ50*01 CASSLAQYTF TRBV7-9*01 TRBJ1-2*01 HLA-A*02:01 B2M MHCI LLAGIGTVPI PGT HomoSapiens PMID:34811538 tetramer-sort yes amplicon-seq Naive T cells T1D T1D_4 chip0423_495963 PBMC +9835 CAPSLNSGGYQKVTF TRAV2*01 TRAJ13*01 CASSVVGGDHGYTF TRBV2*01 TRBJ1-2*01 HLA-B*08:01 B2M MHCI FLRGRAYGL EBNA3A EBV PMID:34811538 tetramer-sort yes amplicon-seq effector memory T cells T1D T1D_4 chip0423_547778 PBMC +9836 CASTNTDTQYF TRBV11-3*01 TRBJ2-3*01 HLA-A*02:01 B2M MHCI YLLLRVLNI IGRP HomoSapiens PMID:34811538 tetramer-sort yes amplicon-seq Naive T cells T1D T1D_4 chip0423_324062 PBMC +9837 CAPTSGSRLTF TRAV20*01 TRAJ10*01 CASSFGRYEQFF TRBV5-1*01 TRBJ2-1*01 HLA-B*08:01 B2M MHCI LWMRLLPL INS HomoSapiens PMID:34811538 tetramer-sort yes amplicon-seq Naive T cells T1D T1D_6 chip0423_111068 PBMC +9838 CALSEFAEGGKLIF TRAV19*01 TRAJ23*01 CASSYGGDQPQHF TRBV6-2*01,TRBV6-3*01 TRBJ1-5*01 HLA-A*01:01 B2M MHCI STNVGSNTY IAPP HomoSapiens PMID:34811538 tetramer-sort yes amplicon-seq Naive T cells T1D T1D_4 chip0423_489161 PBMC +9839 CASSQDGYPAGEAADTQYF TRBV4-1*01 TRBJ2-3*01 HLA-A*01:01 B2M MHCI CTELKLSDY NP InfluenzaA PMID:34811538 tetramer-sort yes amplicon-seq transitional T cells between effector and memory populations healthy healthy_3 chip0423_345318 PBMC +9840 CAGPEYGGSQGNLIF TRAV27*01 TRAJ42*01 HLA-B*08:01 B2M MHCI NLIFKWIL G6PC2 HomoSapiens PMID:34811538 tetramer-sort yes amplicon-seq Naive T cells T1D T1D_5 chip0423_741638 PBMC +9841 CAVDDYKLSF TRAV1-1*01 TRAJ20*01 HLA-A*01:01 B2M MHCI CTELKLSDY NP InfluenzaA PMID:34811538 tetramer-sort yes amplicon-seq Naive T cells T1D T1D_5 chip0423_550109 PBMC +9842 CASSRSIRGTGKDYEQYF TRBV4-1*01 TRBJ2-7*01 HLA-B*08:01 B2M MHCI CPLSKILL LMP2A EBV PMID:34811538 tetramer-sort yes amplicon-seq Naive T cells T1D T1D_6 chip0423_94428 PBMC +9844 CATASASGGYQKVTF TRAV17*01 TRAJ13*01 CASSVMAAPSYEQYF TRBV9*01 TRBJ2-7*01 HLA-B*08:01 B2M MHCI FQQDKHYDL GAD2 HomoSapiens PMID:34811538 tetramer-sort yes amplicon-seq Naive T cells T1D T1D_6 chip0423_575402 PBMC +9845 CARRSLSGGAGHEQFF TRBV7-9*01 TRBJ2-1*01 HLA-B*08:01 B2M MHCI RAKFKQLL BZLF1 EBV PMID:34811538 tetramer-sort yes amplicon-seq effector T cells T1D T1D_5 chip0423_288282 PBMC +9846 CSASGRVLGGELFF TRBV20-1*01 TRBJ2-2*01 HLA-B*08:01 B2M MHCI RPIIRPATL NP InfluenzaA PMID:34811538 tetramer-sort yes amplicon-seq Naive T cells T1D T1D_4 chip0423_783350 PBMC +9847 CILPLAGGTRYGKLTF TRAV26-2*01 TRAJ52*01 CASSSGQAYEQYF TRBV7-8*01 TRBJ2-7*01 HLA-B*08:01 B2M MHCI FLRGRAYGL EBNA3A EBV PMID:34811538 tetramer-sort yes amplicon-seq effector memory T cells healthy healthy_4 chip0423_824191 PBMC +9848 CAGGDGGSQGNLIF TRAV25*01 TRAJ42*01 CASSTRSTGELCF TRBV19*01 TRBJ2-2*01 HLA-A*02:01 B2M MHCI GILGFVFTL M1 InfluenzaA PMID:34811538 tetramer-sort yes amplicon-seq transitional T cells between effector and memory populations healthy healthy_3 chip0423_14226 PBMC +9850 CAMRREGGSEKLVF TRAV14/DV4*01 TRAJ57*01 CASSLIGSPNQPQHF TRBV28*01 TRBJ1-5*01 HLA-A*02:01 B2M MHCI YLLEMLWRL LMP1 EBV PMID:34811538 tetramer-sort yes amplicon-seq Naive T cells healthy healthy_4 chip0423_330723 PBMC +9851 CASSLPFGIEPQHF TRBV5-1*01 TRBJ1-5*01 HLA-B*08:01 B2M MHCI YLKTNLFL G6PC2 HomoSapiens PMID:34811538 tetramer-sort yes amplicon-seq Naive T cells healthy healthy_4 chip0423_73662 PBMC +9852 CASSMMGSGYNEQFF TRBV19*01 TRBJ2-1*01 HLA-A*02:01 B2M MHCI GILGFVFTL M1 InfluenzaA PMID:34811538 tetramer-sort yes amplicon-seq central memory T cells healthy healthy_4 chip0423_84690 PBMC +9853 CALSEGDMRF TRAV9-2*01 TRAJ43*01 CASSLVQGAEQYF TRBV7-3*01 TRBJ2-7*01 HLA-B*08:01 B2M MHCI RAKFKQLL BZLF1 EBV PMID:34811538 tetramer-sort yes amplicon-seq effector memory T cells T1D T1D_5 chip0423_873875 PBMC +9854 CASSLGQLNTEAFF TRBV27*01 TRBJ1-1*01 HLA-A*02:01 B2M MHCI ALGDLFQSI ZNT8 HomoSapiens PMID:34811538 tetramer-sort yes amplicon-seq Naive T cells T1D T1D_4 chip0423_788979 PBMC +9855 CAVRAGKSTF TRAV12-2*01 TRAJ27*01 CSVGGGLGGYTF TRBV29-1*01 TRBJ1-2*01 HLA-A*02:01 B2M MHCI SLISGMWLL VP2 RotavirusA PMID:34811538 tetramer-sort yes amplicon-seq Naive T cells healthy healthy_4 chip0423_590993 PBMC +9856 CASRLTVLAGPNTEAFF TRBV7-3*01 TRBJ1-1*01 HLA-B*08:01 B2M MHCI RAKFKQLL BZLF1 EBV PMID:34811538 tetramer-sort yes amplicon-seq effector T cells T1D T1D_4 chip0423_763305 PBMC +9857 CASSLFQGAAPYEQYF TRBV27*01 TRBJ2-7*01 HLA-A*02:01 B2M MHCI LLAGIGTVPI PGT HomoSapiens PMID:34811538 tetramer-sort yes amplicon-seq Naive T cells T1D T1D_4 chip0423_637710 PBMC +9858 CASRSPGTSGVYEQYF TRBV28*01 TRBJ2-7*01 HLA-A*02:01 B2M MHCI ALAGIGILTV MART1 HomoSapiens PMID:34811538 tetramer-sort yes amplicon-seq Naive T cells healthy healthy_3 chip0423_632699 PBMC +9859 CAVSNWDSSYKLIF TRAV12-2*01 TRAJ12*01 CASSFGQEGLLEQYF TRBV7-2*01 TRBJ2-7*01 HLA-A*02:01 B2M MHCI CLGGLLTMV LMP2A EBV PMID:34811538 tetramer-sort yes amplicon-seq Naive T cells T1D T1D_4 chip0423_197834 PBMC +9860 CASSDRDSVYGYTF TRBV5-6*01 TRBJ1-2*01 HLA-A*01:01 B2M MHCI CTELKLSDY NP InfluenzaA PMID:34811538 tetramer-sort yes amplicon-seq Naive T cells healthy healthy_5 chip0423_173847 PBMC +9861 CAVNTNNNDMRF TRAV12-2*01 TRAJ43*01 CASSTPPAGTVNEKLFF TRBV11-3*01 TRBJ1-4*01 HLA-A*02:01 B2M MHCI ALWMRLLPL PREINS HomoSapiens PMID:34811538 tetramer-sort yes amplicon-seq Naive T cells healthy healthy_3 chip0423_715342 PBMC +9862 CILPLAGGTSYGKLTF TRAV26-2*01 TRAJ52*01 HLA-B*08:01 B2M MHCI FLRGRAYGL EBNA3A EBV PMID:34811538 tetramer-sort yes amplicon-seq central memory T cells T1D T1D_6 chip0423_288229 PBMC +9863 CGANSGTYKYIF TRAV13-2*01 TRAJ40*01 CASSPQTGPVF TRBV7-9*01 TRBJ1-4*01 HLA-B*08:01 B2M MHCI HLKRNIVV GFAP HomoSapiens PMID:34811538 tetramer-sort yes amplicon-seq Naive T cells T1D T1D_5 chip0423_181780 PBMC +9865 CAVSDGEGAQKLVF TRAV8-6*01 TRAJ54*01 CASSLTVLAGPNTEAFF TRBV7-3*01 TRBJ1-1*01 HLA-B*08:01 B2M MHCI RAKFKQLL BZLF1 EBV PMID:34811538 tetramer-sort yes amplicon-seq effector memory T cells T1D T1D_4 chip0423_474571 PBMC +9866 CASSYSTQGASEQYF TRBV6-5*01 TRBJ2-7*01 HLA-B*08:01 B2M MHCI NLIFKWIL G6PC2 HomoSapiens PMID:34811538 tetramer-sort yes amplicon-seq Naive T cells T1D T1D_5 chip0423_464762 PBMC +9867 CAASKG??aAQKLVF TRAV13-1*01 TRAJ54*01 CASSFSQPQHF TRBV28*01 TRBJ1-5*01 HLA-A*02:01 B2M MHCI TLLANVTAV VP6 RotavirusA PMID:34811538 tetramer-sort yes amplicon-seq Naive T cells T1D T1D_4 chip0423_42760 PBMC +9868 CASSPKASLRAEQYF TRBV3-1*01 TRBJ2-7*01 HLA-B*08:01 B2M MHCI RAKFKQLL BZLF1 EBV PMID:34811538 tetramer-sort yes amplicon-seq effector memory T cells healthy healthy_5 chip0423_532660 PBMC +9869 CASSRLGGSLGGYTF TRBV7-9*01 TRBJ1-2*01 HLA-B*08:01 B2M MHCI RAKFKQLL BZLF1 EBV PMID:34811538 tetramer-sort yes amplicon-seq effector memory T cells T1D T1D_5 chip0423_806586 PBMC +9871 CARRQAPRPQGVQPQHF TRBV6-2*01,TRBV6-3*01 TRBJ1-5*01 HLA-B*08:01 B2M MHCI RAKFKQLL BZLF1 EBV PMID:34811538 tetramer-sort yes amplicon-seq effector memory T cells T1D T1D_5 chip0423_360323 PBMC +9872 CAMRDRHPGHTPLVF TRAV14/DV4*01 TRAJ29*01 HLA-B*08:01 B2M MHCI YAYAKWKL ZNT8 HomoSapiens PMID:34811538 tetramer-sort yes amplicon-seq Naive T cells T1D T1D_6 chip0423_467338 PBMC +9873 CAMSISNFGNEKLTF TRAV12-3*01 TRAJ48*01 CAQLPGLca??agGQETQYF TRBV5-1*01 TRBJ2-5*01 HLA-A*02:01 B2M MHCI LLAGIGTVPI PGT HomoSapiens PMID:34811538 tetramer-sort yes amplicon-seq Naive T cells T1D T1D_6 chip0423_161739 PBMC +9874 CAFMKLTYNNNDMRF TRAV38-1*01 TRAJ43*01 CSAAGYRGPYGYTF TRBV20-1*01 TRBJ1-2*01 HLA-A*01:01 B2M MHCI CTELKLSDY NP InfluenzaA PMID:34811538 tetramer-sort yes amplicon-seq transitional T cells between effector and memory populations healthy healthy_3 chip0423_652488 PBMC +9875 CATPTVSTGANSKLTF TRAV17*01 TRAJ56*01 HLA-A*02:01 B2M MHCI GILGFVFTL M1 InfluenzaA PMID:34811538 tetramer-sort yes amplicon-seq central memory T cells healthy healthy_4 chip0423_239539 PBMC +9877 CASSLVMGNEQFF TRBV7-2*01 TRBJ2-1*01 HLA-B*08:01 B2M MHCI RAKFKQLL BZLF1 EBV PMID:34811538 tetramer-sort yes amplicon-seq effector T cells T1D T1D_5 chip0423_838654 PBMC +9878 CAVTNTGNQFYF TRAV8-6*01 TRAJ49*01 CSASDREHYNEQFF TRBV20-1*01 TRBJ2-1*01 HLA-A*02:01 B2M MHCI LLSLFSLWL ZNT8 HomoSapiens PMID:34811538 tetramer-sort yes amplicon-seq Naive T cells T1D T1D_6 chip0423_759553 PBMC +9879 CASSPWATSYEQYF TRBV4-1*01 TRBJ2-7*01 HLA-B*08:01 B2M MHCI RAKFKQLL BZLF1 EBV PMID:34811538 tetramer-sort yes amplicon-seq effector memory T cells T1D T1D_5 chip0423_60422 PBMC +9880 CASSYREQVRTGELFF TRBV13*01 TRBJ2-2*01 HLA-A*02:01 B2M MHCI ALGIGILTV MART1 HomoSapiens PMID:34811538 tetramer-sort yes amplicon-seq Naive T cells T1D T1D_4 chip0423_599436 PBMC +9882 CAMSGSNFGHEKLTF TRAV12-3*01 TRAJ48*01 HLA-A*02:01 B2M MHCI LLAGIGTVPI PGT HomoSapiens PMID:34811538 tetramer-sort yes amplicon-seq Naive T cells T1D T1D_4 chip0423_468285 PBMC +9883 CASSFRcg??acYNEQFF TRBV28*01 TRBJ2-1*01 HLA-A*01:01 B2M MHCI CTELKLSDY NP InfluenzaA PMID:34811538 tetramer-sort yes amplicon-seq transitional T cells between effector and memory populations healthy healthy_3 chip0423_52786 PBMC +9884 CAEMETSYDKVIF TRAV13-2*01 TRAJ50*01 CASSGDISYNEQFF TRBV2*01 TRBJ2-1*01 HLA-B*08:01 B2M MHCI RAKFKQLL BZLF1 EBV PMID:34811538 tetramer-sort yes amplicon-seq effector memory T cells T1D T1D_5 chip0423_222693 PBMC +9885 CATPCG??gAGTLFF TRBV19*01 TRBJ1-4*01 HLA-A*02:01 B2M MHCI YVLDHLIVV BRLF1 EBV PMID:34811538 tetramer-sort yes amplicon-seq effector memory T cells healthy healthy_3 chip0423_351175 PBMC +9887 CATDDDYKLSF TRAV17*01 TRAJ20*01 CASSEGGLAPYEQYF TRBV2*01 TRBJ2-7*01 HLA-B*08:01 B2M MHCI NLIFKWIL G6PC2 HomoSapiens PMID:34811538 tetramer-sort yes amplicon-seq Naive T cells T1D T1D_4 chip0423_100078 PBMC +9888 CASSPGETRGEQYF TRBV5-6*01 TRBJ2-7*01 HLA-A*02:01 B2M MHCI YLLEMLWRL LMP1 EBV PMID:34811538 tetramer-sort yes amplicon-seq effector memory T cells T1D T1D_4 chip0423_496263 PBMC +9890 CASSPLGSNEKLFF TRAV36/DV7*01 TRAJ5*01 CASSPLGSNEKLFF TRBV7-9*01 TRBJ1-4*01 HLA-B*08:01 B2M MHCI RAKFKQLL BZLF1 EBV PMID:34811538 tetramer-sort yes amplicon-seq effector memory T cells T1D T1D_5 chip0423_97567 PBMC +9891 CASDWSD??cSGSRLTF TRAV17*01 TRAJ10*01 HLA-A*02:01 B2M MHCI GILGFVFTL M1 InfluenzaA PMID:34811538 tetramer-sort yes amplicon-seq effector T cells healthy healthy_3 chip0423_164803 PBMC +9892 CAVGSHTGGFKTIF TRAV20*01 TRAJ9*01 CASSPPEFVDTQYF TRBV18*01 TRBJ2-3*01 HLA-A*02:01 B2M MHCI ILGALLSIL ZNT8 HomoSapiens PMID:34811538 tetramer-sort yes amplicon-seq Naive T cells T1D T1D_6 chip0423_178041 PBMC +9893 CAETGSNQAGTALIF TRAV13-2*01 TRAJ15*01 CASSQDGYGGDQPQHF TRBV4-1*01 TRBJ1-5*01 HLA-A*01:01 B2M MHCI CTELKLSDY NP InfluenzaA PMID:34811538 tetramer-sort yes amplicon-seq transitional T cells between effector and memory populations healthy healthy_3 chip0423_146826 PBMC +9894 CGTSGGYQKVTF TRAV12-1*01 TRAJ13*01 HLA-A*02:01 B2M MHCI LLAGIGTVPI PGT HomoSapiens PMID:34811538 tetramer-sort yes amplicon-seq Naive T cells healthy healthy_4 chip0423_474264 PBMC +9895 CASSLIGSGTPGNTEAFF TRBV11-1*01 TRBJ1-1*01 HLA-B*08:01 B2M MHCI RAKFKQLL BZLF1 EBV PMID:34811538 tetramer-sort yes amplicon-seq transitional T cells between effector and memory populations T1D T1D_5 chip0423_470236 PBMC +9896 CAVKTGGYQKVTF TRAV12-2*01 TRAJ13*01 HLA-A*02:01 B2M MHCI LLAGIGTVPI PGT HomoSapiens PMID:34811538 tetramer-sort yes amplicon-seq Naive T cells healthy healthy_3 chip0423_248114 PBMC +9897 CASSLPLAGELFF TRBV5-6*01 TRBJ2-2*01 HLA-A*02:01 B2M MHCI LLAGIGTVPI PGT HomoSapiens PMID:34811538 tetramer-sort yes amplicon-seq Naive T cells healthy healthy_3 chip0423_234985 PBMC +9898 LCPPPRG??cGPGELFF TRBV24-1*01 TRBJ2-2*01 HLA-B*08:01 B2M MHCI RAKFKQLL BZLF1 EBV PMID:34811538 tetramer-sort yes amplicon-seq transitional T cells between effector and memory populations T1D T1D_5 chip0423_38666 PBMC +9900 CADYSSASKIIF TRAV1-1*01 TRAJ3*01 CASSQDGLAATSTDTQYF TRBV4-1*01 TRBJ2-3*01 HLA-A*01:01 B2M MHCI CTELKLSDY NP InfluenzaA PMID:34811538 tetramer-sort yes amplicon-seq transitional T cells between effector and memory populations healthy healthy_3 chip0423_405023 PBMC +9901 CSALAGEPGGGAQYF TRBV29-1*01 TRBJ2-5*01 HLA-B*08:01 B2M MHCI RAKFKQLL BZLF1 EBV PMID:34811538 tetramer-sort yes amplicon-seq effector memory T cells T1D T1D_5 chip0423_384039 PBMC +9902 CANYHTSgg??gcGYEELVF TRAV38-2/DV8*01 TRAJ57*01 HLA-B*08:01 B2M MHCI RAKFKQLL BZLF1 EBV PMID:34811538 tetramer-sort yes amplicon-seq effector memory T cells T1D T1D_4 chip0423_228833 PBMC +9903 CASSRIPGQGARPDPNTGELFF TRBV28*01 TRBJ2-2*01 HLA-A*02:01 B2M MHCI CLGGLLTMV LMP2A EBV PMID:34811538 tetramer-sort yes amplicon-seq effector memory T cells T1D T1D_4 chip0423_822534 PBMC +9904 CASSSLSGGAGNEQFF TRBV7-9*01 TRBJ2-1*01 HLA-B*08:01 B2M MHCI RAKFKQLL BZLF1 EBV PMID:34811538 tetramer-sort yes amplicon-seq effector T cells T1D T1D_5 chip0423_218165 PBMC +9905 CASMYGTGGVYNEQFF TRBV6-1*01 TRBJ2-1*01 HLA-B*08:01 B2M MHCI RAKFKQLL BZLF1 EBV PMID:34811538 tetramer-sort yes amplicon-seq Naive T cells T1D T1D_6 chip0423_753195 PBMC +9906 CASSQDGYGGDQPQHF TRBV4-1*01 TRBJ1-5*01 HLA-A*01:01 B2M MHCI CTELKLSDY NP InfluenzaA PMID:34811538 tetramer-sort yes amplicon-seq effector memory T cells healthy healthy_3 chip0423_106105 PBMC +9907 CATSEQGNTIYF TRBV24-1*01 TRBJ1-3*01 HLA-A*01:01 B2M MHCI LTSLTILQLY G6PC2 HomoSapiens PMID:34811538 tetramer-sort yes amplicon-seq Naive T cells T1D T1D_5 chip0423_685883 PBMC +9908 CAPASGGSYIPTF TRAV24*01 TRAJ6*01 CASCRDGTYEQYF TRBV10-3*01 TRBJ2-7*01 HLA-A*01:01 B2M MHCI CTELKLSDY NP InfluenzaA PMID:34811538 tetramer-sort yes amplicon-seq transitional T cells between effector and memory populations healthy healthy_3 chip0423_623545 PBMC +9909 CAVEDQGRSYNTDKLIF TRAV2*01 TRAJ34*01 HLA-B*08:01 B2M MHCI RAKFKQLL BZLF1 EBV PMID:34811538 tetramer-sort yes amplicon-seq effector memory T cells healthy healthy_4 chip0423_687623 PBMC +9910 CASSSGQAYEQYF TRBV7-8*01 TRBJ2-7*01 HLA-B*08:01 B2M MHCI FLRGRAYGL EBNA3A EBV PMID:34811538 tetramer-sort yes amplicon-seq effector memory T cells healthy healthy_4 chip0423_681817 PBMC +9911 CLVSARN??cGFKTLVF TRAV10*01 TRAJ8*01 HLA-A*02:01 B2M MHCI TLLANVTAV VP6 RotavirusA PMID:34811538 tetramer-sort yes amplicon-seq Naive T cells healthy healthy_4 chip0423_496729 PBMC +9912 CAGALGGGSQGNIIF TRAV27*01 TRAJ42*01 HLA-A*02:01 B2M MHCI GILGFVFTL M1 InfluenzaA PMID:34811538 tetramer-sort yes amplicon-seq transitional T cells between effector and memory populations healthy healthy_3 chip0423_336528 PBMC +9913 CASSFTSSGGVEQFF TRBV7-9*01 TRBJ2-1*01 HLA-B*08:01 B2M MHCI RAKFKQLL BZLF1 EBV PMID:34811538 tetramer-sort yes amplicon-seq effector memory T cells T1D T1D_5 chip0423_520098 PBMC +9914 CAGVFGSRNTGKLIF TRAV27*01 TRAJ37*01 HLA-A*02:01 B2M MHCI GILGFVFTL M1 InfluenzaA PMID:34811538 tetramer-sort yes amplicon-seq transitional T cells between effector and memory populations T1D T1D_6 chip0423_300230 PBMC +9915 CILPLAGGTSYGKLTF TRAV26-2*01 TRAJ52*01 CASSSGQAYEQYF TRBV7-8*01 TRBJ2-7*01 HLA-B*08:01 B2M MHCI FLRGRAYGL EBNA3A EBV PMID:34811538 tetramer-sort yes amplicon-seq effector memory T cells healthy healthy_4 chip0423_168483 PBMC +9916 CAMRAIEGANNLFL TRAV14/DV4*01 TRAJ36*01 HLA-B*08:01 B2M MHCI RAKFKQLL BZLF1 EBV PMID:34811538 tetramer-sort yes amplicon-seq effector T cells T1D T1D_5 chip0423_95124 PBMC +9917 CAMTRPNFGYEEFPF TRAV12-3*01 TRAJ48*01 CASSQDSRDTNEKLFF TRBV14*01 TRBJ1-4*01 HLA-A*02:01 B2M MHCI LLAGIGTVPI PGT HomoSapiens PMID:34811538 tetramer-sort yes amplicon-seq Naive T cells T1D T1D_6 chip0423_101543 PBMC +9918 CAMSASNFGNEKLTF TRAV12-3*01 TRAJ48*01 CASSQDLAGGETQYF TRBV3-1*01 TRBJ2-5*01 HLA-A*02:01 B2M MHCI LLAGIGTVPI PGT HomoSapiens PMID:34811538 tetramer-sort yes amplicon-seq Naive T cells T1D T1D_6 chip0423_865245 PBMC +9920 CAVKEGGKLIF TRAV8-1*01 TRAJ23*01 CASSQMSDSQHF TRBV6-2*01,TRBV6-3*01 TRBJ2-3*01 HLA-A*02:01 B2M MHCI YVLDHLIVV BRLF1 EBV PMID:34811538 tetramer-sort yes amplicon-seq effector memory T cells healthy healthy_3 chip0423_234093 PBMC +9921 CASSETGGTLSPLHF TRBV7-8*01 TRBJ1-6*01 HLA-A*02:01 B2M MHCI GILGFVFTL M1 InfluenzaA PMID:34811538 tetramer-sort yes amplicon-seq central memory T cells healthy healthy_4 chip0423_191678 PBMC +9922 CILSGSARPLTF TRAV26-2*01 TRAJ22*01 CASSEEDGPQHF TRBV9*01 TRBJ1-5*01 HLA-A*01:01 B2M MHCI CTELKLSDY NP InfluenzaA PMID:34811538 tetramer-sort yes amplicon-seq transitional T cells between effector and memory populations healthy healthy_3 chip0423_29742 PBMC +9924 CASRGAGgg?PNDRGAVF TRBV27*01 TRBJ2-2*01 HLA-B*08:01 B2M MHCI YLKTNLFL G6PC2 HomoSapiens PMID:34811538 tetramer-sort yes amplicon-seq central memory T cells T1D T1D_5 chip0423_377096 PBMC +9925 CAETLGNQFYF TRAV13-2*01 TRAJ49*01 CASNRGYTDTQYF TRBV12-3*01,TRBV12-4*01 TRBJ2-3*01 HLA-A*02:01 B2M MHCI TLLANVTAV VP6 RotavirusA PMID:34811538 tetramer-sort yes amplicon-seq transitional T cells between effector and memory populations T1D T1D_6 chip0423_258518 PBMC +9926 CAVSDGEGAQKLVF TRAV8-6*01 TRAJ54*01 CASSLTVLAGPNTEAFF TRBV7-3*01 TRBJ1-1*01 HLA-B*08:01 B2M MHCI RAKFKQLL BZLF1 EBV PMID:34811538 tetramer-sort yes amplicon-seq effector memory T cells T1D T1D_4 chip0423_877508 PBMC +9927 CAVRAGTALIF TRAV12-2*01 TRAJ15*01 CARWNRTGDF TRBV2*01 TRBJ2-7*01 HLA-A*02:01 B2M MHCI LLPPLLEHL PTPRN HomoSapiens PMID:34811538 tetramer-sort yes amplicon-seq Naive T cells healthy healthy_3 chip0423_625533 PBMC +9928 CAASIGF TRAV12-2*01 TRAJ11*01 CASITGSTEAFF TRBV28*01 TRBJ1-1*01 HLA-A*02:01 B2M MHCI ALAGIGILTV MART1 HomoSapiens PMID:34811538 tetramer-sort yes amplicon-seq Naive T cells T1D T1D_4 chip0423_494981 PBMC +9929 CASSLTVLAGPNTEAFF TRBV7-3*01 TRBJ1-1*01 HLA-B*08:01 B2M MHCI RAKFKQLL BZLF1 EBV PMID:34811538 tetramer-sort yes amplicon-seq effector memory T cells T1D T1D_4 chip0423_421973 PBMC +9930 CAVNPGNDMRF TRAV12-2*01 TRAJ43*01 CSVSPGISGNTIYF TRBV29-1*01 TRBJ1-3*01 HLA-A*02:01 B2M MHCI LLAGIGTVPI PGT HomoSapiens PMID:34811538 tetramer-sort yes amplicon-seq transitional T cells between effector and memory populations healthy healthy_3 chip0423_318850 PBMC +9931 CASSYGTGELFF TRBV27*01 TRBJ2-2*01 HLA-A*02:01 B2M MHCI YVLDHLIVV BRLF1 EBV PMID:34811538 tetramer-sort yes amplicon-seq Naive T cells T1D T1D_6 chip0423_288473 PBMC +9933 CAALETSYDKVIF TRAV13-1*01 TRAJ50*01 CASSPDGSTGELFF TRBV12-3*01,TRBV12-4*01 TRBJ2-2*01 HLA-B*08:01 B2M MHCI RAKFKQLL BZLF1 EBV PMID:34811538 tetramer-sort yes amplicon-seq effector T cells T1D T1D_4 chip0423_408004 PBMC +9934 CAENTRYFGRVSLSF TRAV13-2*01 TRAJ48*01 CASSQVRGGYEQYF TRBV3-1*01 TRBJ2-7*01 HLA-B*08:01 B2M MHCI RAKFKQLL BZLF1 EBV PMID:34811538 tetramer-sort yes amplicon-seq transitional T cells between effector and memory populations T1D T1D_6 chip0423_170282 PBMC +9935 CAVGGGGNKLTF TRAV12-2*01 TRAJ10*01 HLA-A*02:01 B2M MHCI LLAGIGTVPI PGT HomoSapiens PMID:34811538 tetramer-sort yes amplicon-seq Naive T cells healthy healthy_3 chip0423_1929 PBMC +9936 CASSETTQGQYTDTQYF TRBV5-1*01 TRBJ2-3*01 HLA-A*02:01 B2M MHCI LLAGIGTVPI PGT HomoSapiens PMID:34811538 tetramer-sort yes amplicon-seq Naive T cells T1D T1D_6 chip0423_691041 PBMC +9938 RSAGRDGTNEKLFF TRBV29-1*01 TRBJ1-4*01 HLA-A*02:01 B2M MHCI GLCTLVAML BLMF1 EBV PMID:34811538 tetramer-sort yes amplicon-seq effector memory T cells T1D T1D_6 chip0423_221808 PBMC +9940 CASTGTSDSTDTQYF TRBV2*01 TRBJ2-3*01 HLA-A*01:01 B2M MHCI CTELKLSDY NP InfluenzaA PMID:34811538 tetramer-sort yes amplicon-seq transitional T cells between effector and memory populations healthy healthy_3 chip0423_509332 PBMC +9941 CAASKIEga?GGAGGLTF TRAV23/DV6*01 TRAJ45*01 CASSLGQAYEQYF TRBV7-8*01 TRBJ2-7*01 HLA-B*08:01 B2M MHCI FLRGRAYGL EBNA3A EBV PMID:34811538 tetramer-sort yes amplicon-seq effector memory T cells T1D T1D_6 chip0423_326300 PBMC +9942 CASSLDSGMGYEQYF TRBV11-3*01 TRBJ2-7*01 HLA-B*08:01 B2M MHCI SRKHKWKL GAD2 HomoSapiens PMID:34811538 tetramer-sort yes amplicon-seq Naive T cells T1D T1D_5 chip0423_174351 PBMC +9943 CAGSGAGSYQLTF TRAV25*01 TRAJ28*01 CASSLEGQASSYEQYF TRBV5-1*01 TRBJ2-7*01 HLA-A*02:01 B2M MHCI CLGGLLTMV LMP2A EBV PMID:34811538 tetramer-sort yes amplicon-seq central memory T cells T1D T1D_4 chip0423_100771 PBMC +9944 CASSQGQGSRNEQFF TRBV4-1*01 TRBJ2-1*01 HLA-B*08:01 B2M MHCI LNHLKATPI IAPP HomoSapiens PMID:34811538 tetramer-sort yes amplicon-seq Naive T cells T1D T1D_6 chip0423_263126 PBMC +9946 CASTDRAYGYTF TRBV6-1*01 TRBJ1-2*01 HLA-A*02:01 B2M MHCI LLAGIGTVPI PGT HomoSapiens PMID:34811538 tetramer-sort yes amplicon-seq Naive T cells healthy healthy_3 chip0423_250902 PBMC +9948 CAMGGGNKLTF TRAV12-3*01 TRAJ10*01 CASNFGFSDYEQYF TRBV6-2*01,TRBV6-3*01 TRBJ2-7*01 HLA-A*02:01 B2M MHCI LLAGIGTVPI PGT HomoSapiens PMID:34811538 tetramer-sort yes amplicon-seq Naive T cells healthy healthy_3 chip0423_405077 PBMC +9949 CASSIFSNQPQHF TRBV19*01 TRBJ1-5*01 HLA-A*02:01 B2M MHCI GILGFVFTL M1 InfluenzaA PMID:34811538 tetramer-sort yes amplicon-seq effector T cells T1D T1D_4 chip0423_403284 PBMC +9950 CALSEAGFYNQGGKLIF TRAV19*01 TRAJ23*01 HLA-A*01:01 B2M MHCI CTELKLSDY NP InfluenzaA PMID:34811538 tetramer-sort yes amplicon-seq transitional T cells between effector and memory populations healthy healthy_3 chip0423_552755 PBMC +9951 CLLPLAGGTSYGKLPF TRAV26-2*01 TRAJ52*01 HLA-B*08:01 B2M MHCI FLRGRAYGL EBNA3A EBV PMID:34811538 tetramer-sort yes amplicon-seq effector memory T cells T1D T1D_4 chip0423_881058 PBMC +9952 CAVGKTDGLTF TRAV8-1*01 TRAJ45*01 HLA-A*02:01 B2M MHCI YVLDHLIVV BRLF1 EBV PMID:34811538 tetramer-sort yes amplicon-seq effector memory T cells healthy healthy_4 chip0423_738137 PBMC +9953 CSDITWaa?NGHKLVF TRAV26-1*01 TRAJ47*01 CARSMLGSGYNEQFF TRBV19*01 TRBJ2-1*01 HLA-A*02:01 B2M MHCI GILGFVFTL M1 InfluenzaA PMID:34811538 tetramer-sort yes amplicon-seq central memory T cells healthy healthy_4 chip0423_406073 PBMC +9954 CASSLAGREGTQYF TRBV11-3*01 TRBJ2-3*01 HLA-B*08:01 B2M MHCI ELRSRYWAI NP InfluenzaA PMID:34811538 tetramer-sort yes amplicon-seq transitional T cells between effector and memory populations T1D T1D_6 chip0423_388774 PBMC +9956 CAVPGGSQGNLIF TRAV8-3*01 TRAJ42*01 CASSYSSTGEYF TRBV6-2*01,TRBV6-3*01 TRBJ2-7*01 HLA-A*02:01 B2M MHCI YLLEMLWRL LMP1 EBV PMID:34811538 tetramer-sort yes amplicon-seq central memory T cells T1D T1D_4 chip0423_374042 PBMC +9957 CAVPINAGTHRKLIW TRAV1-2*01 TRAJ38*01 CSARDRGSENTGELFF TRBV20-1*01 TRBJ2-2*01 HLA-B*08:01 B2M MHCI RAKFKQLL BZLF1 EBV PMID:34811538 tetramer-sort yes amplicon-seq effector memory T cells healthy healthy_4 chip0423_317901 PBMC +9958 CAMLLSNFGDEKLPF TRAV12-3*01 TRAJ48*01 CASSFSG??cGEGPQHF TRBV7-9*01 TRBJ1-5*01 HLA-A*02:01 B2M MHCI LLAGIGTVPI PGT HomoSapiens PMID:34811538 tetramer-sort yes amplicon-seq Naive T cells T1D T1D_4 chip0423_167333 PBMC +9959 CASSHRTGSGNTIYF TRBV14*01 TRBJ1-3*01 HLA-A*02:01 B2M MHCI LLAGIGTVPI PGT HomoSapiens PMID:34811538 tetramer-sort yes amplicon-seq Naive T cells T1D T1D_6 chip0423_632870 PBMC +9960 CAVIFPGGGNKLTF TRAV8-6*01 TRAJ10*01 CSVEEGRGAGELFF TRBV29-1*01 TRBJ2-2*01 HLA-A*02:01 B2M MHCI LLAGIGTVPI PGT HomoSapiens PMID:34811538 tetramer-sort yes amplicon-seq Naive T cells healthy healthy_4 chip0423_369680 PBMC +9962 CASSWGQGPTYEQYF TRBV4-1*01 TRBJ2-7*01 HLA-B*08:01 B2M MHCI RAKFKQLL BZLF1 EBV PMID:34811538 tetramer-sort yes amplicon-seq effector memory T cells healthy healthy_4 chip0423_250543 PBMC +9963 CASNTGTGLGEQFF TRBV25-1*01 TRBJ2-1*01 HLA-A*02:01 B2M MHCI GILGFVFTL M1 InfluenzaA PMID:34811538 tetramer-sort yes amplicon-seq central memory T cells healthy healthy_4 chip0423_850915 PBMC +9966 CAVGGYGGSQGNLIF TRAV3*01 TRAJ42*01 HLA-A*02:01 B2M MHCI GILGFVFTL M1 InfluenzaA PMID:34811538 tetramer-sort yes amplicon-seq central memory T cells healthy healthy_3 chip0423_364127 PBMC +9967 CAVEKKNTDTLIF TRAV21*01 TRAJ34*01 HLA-B*08:01 B2M MHCI RAKFKQLL BZLF1 EBV PMID:34811538 tetramer-sort yes amplicon-seq effector memory T cells healthy healthy_4 chip0423_356220 PBMC +9968 CASSSTQSGDQPQHF TRBV7-9*01 TRBJ1-5*01 HLA-B*08:01 B2M MHCI RAKFKQLL BZLF1 EBV PMID:34811538 tetramer-sort yes amplicon-seq effector memory T cells T1D T1D_5 chip0423_97114 PBMC +9969 CILPLAGGTSYGKLTF TRAV26-2*01 TRAJ52*01 CASSLGQAYEQYF TRBV7-8*01 TRBJ2-7*01 HLA-B*08:01 B2M MHCI FLRGRAYGL EBNA3A EBV PMID:34811538 tetramer-sort yes amplicon-seq effector memory T cells T1D T1D_4 chip0423_45879 PBMC +9970 CASDNDYKLSF TRAV1-2*01 TRAJ20*01 CRATSGAGVEHGYTF TRBV20-1*01 TRBJ1-2*01 HLA-B*08:01 B2M MHCI EIYKRWII Gag HIV-1 PMID:34811538 tetramer-sort yes amplicon-seq Naive T cells healthy healthy_4 chip0423_653914 PBMC +9971 CASSLAGREGTQYF TRBV11-3*01 TRBJ2-3*01 HLA-B*08:01 B2M MHCI ELRSRYWAI NP InfluenzaA PMID:34811538 tetramer-sort yes amplicon-seq effector T cells T1D T1D_6 chip0423_564811 PBMC +9972 CAVEDQGRSYNTDKLIF TRAV2*01 TRAJ34*01 HLA-B*08:01 B2M MHCI RAKFKQLL BZLF1 EBV PMID:34811538 tetramer-sort yes amplicon-seq effector memory T cells healthy healthy_4 chip0423_718252 PBMC +9973 CAGAQGGSEKLVF TRAV12-2*01 TRAJ57*01 CASSQSGSEQYF TRBV16*01 TRBJ2-7*01 HLA-A*02:01 B2M MHCI LLAGIGTVPI PGT HomoSapiens PMID:34811538 tetramer-sort yes amplicon-seq Naive T cells healthy healthy_3 chip0423_211586 PBMC +9974 CAVNPSQNFVF TRAV12-2*01 TRAJ26*01 CASSDRDRGLDEQFF TRBV3-1*01 TRBJ2-1*01 HLA-A*02:01 B2M MHCI LLAGIGTVPI PGT HomoSapiens PMID:34811538 tetramer-sort yes amplicon-seq Naive T cells healthy healthy_3 chip0423_774132 PBMC +9975 CAPIQPPYNFNKFYF TRAV35*01 TRAJ21*01 HLA-A*01:01 B2M MHCI STNVGSNTY IAPP HomoSapiens PMID:34811538 tetramer-sort yes amplicon-seq central memory T cells T1D T1D_6 chip0423_479228 PBMC +9976 CALSSYSGGSQQVPF TRAV19*01 TRAJ13*01 HLA-A*01:01 B2M MHCI CTELKLSDY NP InfluenzaA PMID:34811538 tetramer-sort yes amplicon-seq central memory T cells healthy healthy_3 chip0423_409454 PBMC +9977 CASSQVNNPGDGYTF TRBV14*01 TRBJ1-2*01 HLA-B*08:01 B2M MHCI QAKWRLQTL EBNA3A EBV PMID:34811538 tetramer-sort yes amplicon-seq effector T cells T1D T1D_4 chip0423_302895 PBMC +9978 CGTERASSNTGKLIF TRAV30*01 TRAJ37*01 HLA-A*01:01 B2M MHCI VTDAAHLLI ZNT8 HomoSapiens PMID:34811538 tetramer-sort yes amplicon-seq Naive T cells T1D T1D_5 chip0423_61958 PBMC +9979 CAASGDYKLSF TRAV13-1*01 TRAJ20*01 CASSPKTGAGLAGDEQFF TRBV11-1*01 TRBJ2-1*01 HLA-A*01:01 B2M MHCI CTELKLSDY NP InfluenzaA PMID:34811538 tetramer-sort yes amplicon-seq transitional T cells between effector and memory populations healthy healthy_3 chip0423_664270 PBMC +9980 CAMSDTNAGKSTF TRAV12-3*01 TRAJ27*01 CASRGQRYTEAFF TRBV27*01 TRBJ1-1*01 HLA-A*02:01 B2M MHCI VVTGVLVYL ZNT8 HomoSapiens PMID:34811538 tetramer-sort yes amplicon-seq Naive T cells T1D T1D_6 chip0423_650494 PBMC +9981 CAEMETSYDKAIF TRAV13-2*01 TRAJ50*01 CASSSLSGGAGNEQFF TRBV7-9*01 TRBJ2-1*01 HLA-B*08:01 B2M MHCI RAKFKQLL BZLF1 EBV PMID:34811538 tetramer-sort yes amplicon-seq effector T cells T1D T1D_5 chip0423_546945 PBMC +9982 CLLTPF??cASALNF TRAV26-2*01 TRAJ41*01 CASSQLGEAKEGTEASF TRBV11-1*01 TRBJ1-1*01 HLA-A*01:01 B2M MHCI HSNLNDATY NP InfluenzaA PMID:34811538 tetramer-sort yes amplicon-seq effector T cells T1D T1D_5 chip0423_481797 PBMC +9983 CDYGQGASGNTIYF TRBV10-3*01 TRBJ1-3*01 HLA-B*08:01 B2M MHCI FSLKKGAAA GAD2 HomoSapiens PMID:34811538 tetramer-sort yes amplicon-seq Naive T cells T1D T1D_5 chip0423_20130 PBMC +9984 CAASETSYDKVIF TRAV13-1*01 TRAJ50*01 HLA-B*08:01 B2M MHCI RAKFKQLL BZLF1 EBV PMID:34811538 tetramer-sort yes amplicon-seq effector memory T cells T1D T1D_5 chip0423_823513 PBMC +9985 CAAAETSYDKVIF TRAV13-1*01 TRAJ50*01 CASSLYWDSSYEQYF TRBV5-1*01 TRBJ2-7*01 HLA-B*08:01 B2M MHCI RAKFKQLL BZLF1 EBV PMID:34811538 tetramer-sort yes amplicon-seq effector T cells T1D T1D_5 chip0423_683611 PBMC +9987 CASSYNSRTHSSNQPQHF TRBV6-2*01,TRBV6-3*01 TRBJ1-5*01 HLA-A*02:01 B2M MHCI GILGFVFTL M1 InfluenzaA PMID:34811538 tetramer-sort yes amplicon-seq transitional T cells between effector and memory populations T1D T1D_4 chip0423_450467 PBMC +9988 CAVNDEGSNYQLIW TRAV12-2*01 TRAJ33*01 CASSIAGGLGNEQFF TRBV6-2*01,TRBV6-3*01 TRBJ2-1*01 HLA-B*08:01 B2M MHCI YAYAKWKL ZNT8 HomoSapiens PMID:34811538 tetramer-sort yes amplicon-seq Naive T cells T1D T1D_5 chip0423_835605 PBMC +9989 CASSLVTSNTGELFF TRBV7-9*01 TRBJ2-2*01 HLA-B*08:01 B2M MHCI RAKFKQLL BZLF1 EBV PMID:34811538 tetramer-sort yes amplicon-seq transitional T cells between effector and memory populations healthy healthy_5 chip0423_681199 PBMC +9990 CAVNPSFQKLVF TRAV12-2*01 TRAJ8*01 CASSQEGQGAGELFF TRBV4-1*01 TRBJ2-2*01 HLA-A*01:01 B2M MHCI CTELKLSDY NP InfluenzaA PMID:34811538 tetramer-sort yes amplicon-seq transitional T cells between effector and memory populations healthy healthy_3 chip0423_494282 PBMC +9991 CASSLWYRVETQYF TRBV5-6*01 TRBJ2-5*01 HLA-A*01:01 B2M MHCI CTELKLSDY NP InfluenzaA PMID:34811538 tetramer-sort yes amplicon-seq transitional T cells between effector and memory populations healthy healthy_3 chip0423_460216 PBMC +9992 CASSQAPGQRTGELFF TRBV4-1*01 TRBJ2-2*01 HLA-B*08:01 B2M MHCI RAKFKQLL BZLF1 EBV PMID:34811538 tetramer-sort yes amplicon-seq effector memory T cells healthy healthy_4 chip0423_366453 PBMC +9993 CAVLPSNDYKLSF TRAV21*01 TRAJ20*01 CASIGKTTNTDTQYF TRBV19*01 TRBJ2-3*01 HLA-A*01:01 B2M MHCI CTELKLSDY NP InfluenzaA PMID:34811538 tetramer-sort yes amplicon-seq transitional T cells between effector and memory populations healthy healthy_3 chip0423_59689 PBMC +9994 CAVALSNFGNEKLTF TRAV12-2*01 TRAJ48*01 CASSPTIPGPSTILEETQYF TRBV14*01 TRBJ2-5*01 HLA-A*02:01 B2M MHCI LLAGIGTVPI PGT HomoSapiens PMID:34811538 tetramer-sort yes amplicon-seq Naive T cells healthy healthy_3 chip0423_501581 PBMC +9995 CSAGRDGTNEKLFF TRBV29-1*01 TRBJ1-4*01 HLA-A*02:01 B2M MHCI GLCTLVAML BLMF1 EBV PMID:34811538 tetramer-sort yes amplicon-seq effector T cells T1D T1D_6 chip0423_720807 PBMC +9996 CAASTSGTYTYIF TRAV13-1*01 TRAJ40*01 CASSSPGLGSMGGYTF TRBV28*01 TRBJ1-2*01 HLA-A*02:01 B2M MHCI LAVDGVLSV ZNT8 HomoSapiens PMID:34811538 tetramer-sort yes amplicon-seq Naive T cells T1D T1D_6 chip0423_397048 PBMC +9997 CASSSGSSGGAGETQYF TRBV12-3*01,TRBV12-4*01 TRBJ2-5*01 HLA-B*08:01 B2M MHCI RAKFKQLL BZLF1 EBV PMID:34811538 tetramer-sort yes amplicon-seq effector memory T cells T1D T1D_5 chip0423_200319 PBMC +9998 CASSSPQKYEQYF TRBV13*01 TRBJ2-7*01 HLA-A*02:01 B2M MHCI VLFGLGFAI IGRP HomoSapiens PMID:34811538 tetramer-sort yes amplicon-seq Naive T cells T1D T1D_6 chip0423_504383 PBMC +9999 CAVEDQGRSYNTDKLLF TRAV2*01 TRAJ34*01 HLA-B*08:01 B2M MHCI RAKFKQLL BZLF1 EBV PMID:34811538 tetramer-sort yes amplicon-seq effector memory T cells healthy healthy_4 chip0423_502488 PBMC +10000 CILPYSSGSARQLTF TRAV26-2*01 TRAJ22*01 CASQLAGGTGELFF TRBV24-1*01 TRBJ2-2*01 HLA-A*02:01 B2M MHCI LLAGIGTVPI PGT HomoSapiens PMID:34811538 tetramer-sort yes amplicon-seq Naive T cells T1D T1D_4 chip0423_775629 PBMC +10001 CIVREGGGADGLTF TRAV26-1*01 TRAJ45*01 CASSLAVGEGPQHF TRBV7-9*01 TRBJ1-5*01 HLA-B*08:01 B2M MHCI RAKFKQLL BZLF1 EBV PMID:34811538 tetramer-sort yes amplicon-seq effector memory T cells T1D T1D_4 chip0423_186478 PBMC +10002 GVVTIGAGCLGLLFF TRAV12-1*01 TRAJ42*01 CASSPKKEKNEQFF TRBV4-3*01 TRBJ2-1*01 HLA-A*02:01 B2M MHCI GILGFVFTL M1 InfluenzaA PMID:34811538 tetramer-sort yes amplicon-seq transitional T cells between effector and memory populations T1D T1D_6 chip0423_81912 PBMC +10005 CAGDGRTGANNLFF TRAV36/DV7*01 TRAJ36*01 CASSDDGMNTEAFF TRBV10-2*01 TRBJ1-1*01 HLA-A*02:01 B2M MHCI CLGGLLTMV LMP2A EBV PMID:34811538 tetramer-sort yes amplicon-seq central memory T cells T1D T1D_4 chip0423_518977 PBMC +10006 CSADSYRDIDNYGYTF TRBV20-1*01 TRBJ1-2*01 HLA-A*01:01 B2M MHCI CTELKLSDY NP InfluenzaA PMID:34811538 tetramer-sort yes amplicon-seq transitional T cells between effector and memory populations healthy healthy_3 chip0423_286774 PBMC +10008 CAVSYSGGYQKVTF TRAV8-1*01 TRAJ13*01 HLA-A*02:01 B2M MHCI GILGFVFTL M1 InfluenzaA PMID:34811538 tetramer-sort yes amplicon-seq central memory T cells healthy healthy_4 chip0423_780502 PBMC +10010 CAVGGSQGNLIF TRAV41*01 TRAJ42*01 HLA-A*02:01 B2M MHCI LAVDGVLSV ZNT8 HomoSapiens PMID:34811538 tetramer-sort yes amplicon-seq Naive T cells T1D T1D_4 chip0423_116024 PBMC +10011 CATSGSNFGNEKLTF TRAV12-3*01 TRAJ48*01 CASSYVRPta??gtFSGNTI*F TRBV6-5*01 TRBJ1-3*01 HLA-A*02:01 B2M MHCI LLAGIGTVPI PGT HomoSapiens PMID:34811538 tetramer-sort yes amplicon-seq Naive T cells healthy healthy_3 chip0423_246682 PBMC +10012 CILPLAGGTSYGKLTF TRAV26-2*01 TRAJ52*01 CASSLGQAYEQYF TRBV7-8*01 TRBJ2-7*01 HLA-B*08:01 B2M MHCI FLRGRAYGL EBNA3A EBV PMID:34811538 tetramer-sort yes amplicon-seq effector T cells T1D T1D_6 chip0423_666210 PBMC +10013 CVVNGENARLMF TRAV12-1*01 TRAJ31*01 CASSRTSDWNTGELFF TRBV5-6*01 TRBJ2-2*01 HLA-A*01:01 B2M MHCI CTELKLSDY NP InfluenzaA PMID:34811538 tetramer-sort yes amplicon-seq central memory T cells healthy healthy_3 chip0423_40985 PBMC +10014 CAVKMDSSYKLIF TRAV12-2*01 TRAJ12*01 HLA-A*02:01 B2M MHCI LLAGIGTVPI PGT HomoSapiens PMID:34811538 tetramer-sort yes amplicon-seq transitional T cells between effector and memory populations T1D T1D_4 chip0423_738231 PBMC +10015 CASSSQNREGETQYF TRBV12-3*01,TRBV12-4*01 TRBJ2-5*01 HLA-B*08:01 B2M MHCI RAKFKQLL BZLF1 EBV PMID:34811538 tetramer-sort yes amplicon-seq effector memory T cells healthy healthy_4 chip0423_618256 PBMC +10016 CAVEKKNTDKLIF TRAV12-2*01,TRAV21*01 TRAJ34*01 CASSLNVGEGAGNTIYF TRBV7-6*01 TRBJ1-3*01 HLA-B*08:01 B2M MHCI RAKFKQLL BZLF1 EBV PMID:34811538 tetramer-sort yes amplicon-seq effector T cells healthy healthy_4 chip0423_354320 PBMC +10017 CALSSYSGGCQRVTF TRAV19*01 TRAJ13*01 HLA-A*01:01 B2M MHCI CTELKLSDY NP InfluenzaA PMID:34811538 tetramer-sort yes amplicon-seq transitional T cells between effector and memory populations healthy healthy_3 chip0423_93838 PBMC +10018 CGPVTCGGRQGDLVF TRAV17*01 TRAJ42*01 CASSLNVGEGAGNTIYF TRBV7-6*01 TRBJ1-3*01 HLA-B*08:01 B2M MHCI RAKFKQLL BZLF1 EBV PMID:34811538 tetramer-sort yes amplicon-seq effector T cells healthy healthy_4 chip0423_770371 PBMC +10020 CASRVGREPTGELFF TRBV3-1*01 TRBJ2-2*01 HLA-B*08:01 B2M MHCI RAKFKQLL BZLF1 EBV PMID:34811538 tetramer-sort yes amplicon-seq effector memory T cells healthy healthy_4 chip0423_97697 PBMC +10021 CAASAGGFKTIF TRAV12-2*01 TRAJ9*01 HLA-A*02:01 B2M MHCI LLAGIGTVPI PGT HomoSapiens PMID:34811538 tetramer-sort yes amplicon-seq Naive T cells healthy healthy_4 chip0423_732134 PBMC +10022 CAVPNQAGTALIF TRAV12-2*01 TRAJ15*01 CASCYGGLGTEAFC TRBV6-2*01,TRBV6-3*01 TRBJ1-1*01 HLA-A*02:01 B2M MHCI LLAGIGTVPI PGT HomoSapiens PMID:34811538 tetramer-sort yes amplicon-seq Naive T cells T1D T1D_4 chip0423_293336 PBMC +10023 CASSSGQAYEQYF TRBV7-8*01 TRBJ2-7*01 HLA-B*08:01 B2M MHCI FLRGRAYGL EBNA3A EBV PMID:34811538 tetramer-sort yes amplicon-seq effector memory T cells healthy healthy_4 chip0423_52360 PBMC +10024 CAVRDTTWDDKIIF TRAV3*01 TRAJ30*01 CASSLGGGEGASEQFF TRBV7-6*01 TRBJ2-1*01 HLA-B*08:01 B2M MHCI FLRGRAYGL EBNA3A EBV PMID:34811538 tetramer-sort yes amplicon-seq effector memory T cells T1D T1D_4 chip0423_588811 PBMC +10025 CAVNMETSNYKLTF TRAV12-2*01 TRAJ53*01 HLA-A*02:01 B2M MHCI LLAGIGTVPI PGT HomoSapiens PMID:34811538 tetramer-sort yes amplicon-seq Naive T cells healthy healthy_3 chip0423_696639 PBMC +10026 CAEMETSYDKVMF TRAV13-2*01 TRAJ50*01 CASSSLSGGAGNEQFF TRBV7-9*01 TRBJ2-1*01 HLA-B*08:01 B2M MHCI RAKFKQLL BZLF1 EBV PMID:34811538 tetramer-sort yes amplicon-seq effector memory T cells T1D T1D_5 chip0423_578438 PBMC +10027 CVVFSTGGYQKVTF TRAV12-1*01 TRAJ13*01 CSVSTGHNEQFF TRBV29-1*01 TRBJ2-1*01 HLA-A*01:01 B2M MHCI HSNLNDATY NP InfluenzaA PMID:34811538 tetramer-sort yes amplicon-seq Naive T cells T1D T1D_4 chip0423_371147 PBMC +10029 CALIFFW??tGYNKLIF TRAV19*01 TRAJ4*01 CASSEMWGAPLHF TRBV2*01 TRBJ1-6*01 HLA-A*01:01 B2M MHCI CTELKLSDY NP InfluenzaA PMID:34811538 tetramer-sort yes amplicon-seq transitional T cells between effector and memory populations healthy healthy_3 chip0423_675412 PBMC +10030 CALSEYW??aANSKLTF TRAV9-2*01 TRAJ56*01 CASSLVGGHESSYEQYF TRBV11-2*01 TRBJ2-7*01 HLA-A*02:01 B2M MHCI KMYAFTLES ZNT8 HomoSapiens PMID:34811538 tetramer-sort yes amplicon-seq Naive T cells healthy healthy_3 chip0423_544506 PBMC +10034 CSAGSGEGYEQYF TRBV29-1*01 TRBJ2-7*01 HLA-B*08:01 B2M MHCI RAKFKQLL BZLF1 EBV PMID:34811538 tetramer-sort yes amplicon-seq effector memory T cells healthy healthy_4 chip0423_651310 PBMC +10035 CAPNTGNQFYF TRAV38-1*01 TRAJ49*01 HLA-A*01:01 B2M MHCI LTSLTILQLY G6PC2 HomoSapiens PMID:34811538 tetramer-sort yes amplicon-seq Naive T cells T1D T1D_5 chip0423_642509 PBMC +10038 CASSEMWGAPLHF TRBV2*01 TRBJ1-6*01 HLA-A*01:01 B2M MHCI CTELKLSDY NP InfluenzaA PMID:34811538 tetramer-sort yes amplicon-seq transitional T cells between effector and memory populations healthy healthy_3 chip0423_232076 PBMC +10041 CASSSGQAYEQYF TRBV7-8*01 TRBJ2-7*01 HLA-B*08:01 B2M MHCI FLRGRAYGL EBNA3A EBV PMID:34811538 tetramer-sort yes amplicon-seq effector memory T cells healthy healthy_4 chip0423_624104 PBMC +10042 CAASEHNQFYF TRAV13-1*01 TRAJ49*01 CASSFPSLHTQYF TRBV12-3*01,TRBV12-4*01 TRBJ2-3*01 HLA-B*08:01 B2M MHCI RAKFKQLL BZLF1 EBV PMID:34811538 tetramer-sort yes amplicon-seq effector memory T cells T1D T1D_5 chip0423_501794 PBMC +10043 CAVRLRR??gGAAGLTF TRAV3*01 TRAJ45*01 HLA-B*08:01 B2M MHCI RAKFKQLL BZLF1 EBV PMID:34811538 tetramer-sort yes amplicon-seq effector memory T cells T1D T1D_4 chip0423_266846 PBMC +10044 CAISISHFGPERFPF TRAV12-3*01 TRAJ48*01 HLA-A*02:01 B2M MHCI LLAGIGTVPI PGT HomoSapiens PMID:34811538 tetramer-sort yes amplicon-seq Naive T cells healthy healthy_3 chip0423_310352 PBMC +10045 CASRVGREPTGELFF TRBV3-1*01 TRBJ2-2*01 HLA-B*08:01 B2M MHCI RAKFKQLL BZLF1 EBV PMID:34811538 tetramer-sort yes amplicon-seq transitional T cells between effector and memory populations healthy healthy_4 chip0423_252167 PBMC +10046 CASRNSGYALNF TRAV38-1*01 TRAJ41*01 HLA-A*01:01 B2M MHCI STNVGSNTY IAPP HomoSapiens PMID:34811538 tetramer-sort yes amplicon-seq transitional T cells between effector and memory populations T1D T1D_5 chip0423_777037 PBMC +10047 CAGAGGGSQGNLIF TRAV27*01 TRAJ42*01 CASSGRSSEPQHF TRBV19*01 TRBJ1-5*01 HLA-A*02:01 B2M MHCI GILGFVFTL M1 InfluenzaA PMID:34811538 tetramer-sort yes amplicon-seq transitional T cells between effector and memory populations T1D T1D_4 chip0423_666134 PBMC +10048 CAVEDQGRSYNTDKLIF TRAV2*01 TRAJ34*01 HLA-B*08:01 B2M MHCI RAKFKQLL BZLF1 EBV PMID:34811538 tetramer-sort yes amplicon-seq transitional T cells between effector and memory populations healthy healthy_4 chip0423_597256 PBMC +10049 CASSTTRAGTWPLHF TRBV7-9*01 TRBJ1-6*01 HLA-B*08:01 B2M MHCI RAKFKQLL BZLF1 EBV PMID:34811538 tetramer-sort yes amplicon-seq effector memory T cells healthy healthy_4 chip0423_517751 PBMC +10050 CASSLNVGEGAGNTIYF TRBV7-6*01 TRBJ1-3*01 HLA-B*08:01 B2M MHCI RAKFKQLL BZLF1 EBV PMID:34811538 tetramer-sort yes amplicon-seq effector memory T cells healthy healthy_4 chip0423_673597 PBMC +10052 CASSQWDGNSPLHF TRBV7-9*01 TRBJ1-6*01 HLA-A*01:01 B2M MHCI GSHLVEALY INS HomoSapiens PMID:34811538 tetramer-sort yes amplicon-seq Naive T cells T1D T1D_5 chip0423_802731 PBMC +10053 CAMTLSNFGNEKLTF TRAV12-3*01 TRAJ48*01 CASSFSRD??aDGSGELFF TRBV7-6*01 TRBJ2-2*01 HLA-A*02:01 B2M MHCI LLAGIGTVPI PGT HomoSapiens PMID:34811538 tetramer-sort yes amplicon-seq Naive T cells T1D T1D_6 chip0423_685308 PBMC +10054 CASGGGGKLIF TRAV12-1*01 TRAJ23*01 CASSQGSGGLPYNEQFF TRBV3-1*01 TRBJ2-1*01 HLA-A*02:01 B2M MHCI LLAGIGTVPI PGT HomoSapiens PMID:34811538 tetramer-sort yes amplicon-seq Naive T cells healthy healthy_4 chip0423_640061 PBMC +10055 CAYRSPEATDKLIF TRAV38-2/DV8*01 TRAJ34*01 HLA-A*02:01 B2M MHCI CLGGLLTMV LMP2A EBV PMID:34811538 tetramer-sort yes amplicon-seq Naive T cells healthy healthy_4 chip0423_484444 PBMC +10056 CASAISNFGNEKLTF TRAV12-3*01 TRAJ48*01 HLA-A*02:01 B2M MHCI LLAGIGTVPI PGT HomoSapiens PMID:34811538 tetramer-sort yes amplicon-seq Naive T cells T1D T1D_4 chip0423_411574 PBMC +10057 CAASETSYDKVIF TRAV13-1*01 TRAJ50*01 CASSTTRAGTWPLHF TRBV7-9*01 TRBJ1-6*01 HLA-B*08:01 B2M MHCI RAKFKQLL BZLF1 EBV PMID:34811538 tetramer-sort yes amplicon-seq effector T cells healthy healthy_4 chip0423_164386 PBMC +10058 CASSGQGWIEAFF TRBV27*01 TRBJ1-1*01 HLA-A*01:01 B2M MHCI CTELKLSDY NP InfluenzaA PMID:34811538 tetramer-sort yes amplicon-seq Naive T cells T1D T1D_4 chip0423_525683 PBMC +10059 CVVSVNNNARPMF TRAV8-2*01 TRAJ31*01 CASSQTGTGHQPQHF TRBV28*01 TRBJ1-5*01 HLA-A*02:01 B2M MHCI LLAGIGTVPI PGT HomoSapiens PMID:34811538 tetramer-sort yes amplicon-seq Naive T cells T1D T1D_4 chip0423_354490 PBMC +10061 CILPLAGGTSYGKLTF TRAV26-2*01 TRAJ52*01 CASSLGQAYEQYF TRBV7-8*01 TRBJ2-7*01 HLA-B*08:01 B2M MHCI FLRGRAYGL EBNA3A EBV PMID:34811538 tetramer-sort yes amplicon-seq effector memory T cells T1D T1D_6 chip0423_569890 PBMC +10062 FASSFGVGATEETQYF TRBV5-4*01 TRBJ2-5*01 HLA-A*01:01 B2M MHCI CTELKLSDY NP InfluenzaA PMID:34811538 tetramer-sort yes amplicon-seq transitional T cells between effector and memory populations healthy healthy_3 chip0423_502177 PBMC +10063 CASSARDDYDEQYF TRBV9*01 TRBJ2-7*01 HLA-A*02:01 B2M MHCI GILGFVFTL M1 InfluenzaA PMID:34811538 tetramer-sort yes amplicon-seq transitional T cells between effector and memory populations T1D T1D_6 chip0423_455978 PBMC +10065 CASSQLGGVYNEQFF TRBV7-9*01 TRBJ2-1*01 HLA-B*08:01 B2M MHCI RAKFKQLL BZLF1 EBV PMID:34811538 tetramer-sort yes amplicon-seq effector T cells T1D T1D_5 chip0423_821387 PBMC +10067 CAVGGGPNDYKLSF TRAV8-1*01 TRAJ20*01 CASSSGQENEKLFF TRBV3-1*01 TRBJ1-4*01 HLA-B*08:01 B2M MHCI RAKFKQLL BZLF1 EBV PMID:34811538 tetramer-sort yes amplicon-seq effector memory T cells T1D T1D_5 chip0423_688257 PBMC +10068 CAVRDSFSYSGGGADGLTF TRAV3*01 TRAJ45*01 CSARDGGINQPQHF TRBV20-1*01 TRBJ1-5*01 HLA-A*01:01 B2M MHCI LVSDGGPNLY PB1 InfluenzaA PMID:34811538 tetramer-sort yes amplicon-seq transitional T cells between effector and memory populations healthy healthy_3 chip0423_640620 PBMC +10069 CAVYNAGNMLTF TRAV12-2*01 TRAJ39*01 RASSYSINEQYF TRBV6-5*01 TRBJ2-7*01 HLA-A*02:01 B2M MHCI FLWSVFWLI IGRP HomoSapiens PMID:34811538 tetramer-sort yes amplicon-seq Naive T cells healthy healthy_4 chip0423_271865 PBMC +10070 CASSLVLGREQYF TRBV7-2*01 TRBJ2-7*01 HLA-B*08:01 B2M MHCI RAKFKQLL BZLF1 EBV PMID:34811538 tetramer-sort yes amplicon-seq effector memory T cells T1D T1D_5 chip0423_85895 PBMC +10071 CASSLVVEGRVNTEAFF TRBV11-2*01 TRBJ1-1*01 HLA-A*02:01 B2M MHCI LLAGIGTVPI PGT HomoSapiens PMID:34811538 tetramer-sort yes amplicon-seq Naive T cells healthy healthy_3 chip0423_510369 PBMC +10072 CAVGAFRPGGFNTVF TRAV3*01 TRAJ9*01 HLA-A*02:01 B2M MHCI GILGFVFTL M1 InfluenzaA PMID:34811538 tetramer-sort yes amplicon-seq transitional T cells between effector and memory populations T1D T1D_6 chip0423_801545 PBMC +10073 CASSGGARDYTF TRBV28*01 TRBJ1-2*01 HLA-B*08:01 B2M MHCI LRLRLDQL GFAP HomoSapiens PMID:34811538 tetramer-sort yes amplicon-seq Naive T cells T1D T1D_4 chip0423_118658 PBMC +10074 CAVSIGYGGSQGNLIF TRAV8-3*01 TRAJ42*01 CASSGGVQSSYEQYF TRBV9*01 TRBJ2-7*01 HLA-B*08:01 B2M MHCI FQQDKHYDL GAD2 HomoSapiens PMID:34811538 tetramer-sort yes amplicon-seq Naive T cells T1D T1D_6 chip0423_776021 PBMC +10075 CAGGWLtg??ctPHHLIF TRAV1-2*01 TRAJ32*01 CASSEMWGAPLHF TRBV2*01 TRBJ1-6*01 HLA-A*01:01 B2M MHCI CTELKLSDY NP InfluenzaA PMID:34811538 tetramer-sort yes amplicon-seq effector T cells healthy healthy_3 chip0423_244343 PBMC +10077 CAFMKLYSGNTPLVF TRAV38-1*01 TRAJ29*01 CSASWTGTNTGELFF TRBV20-1*01 TRBJ2-2*01 HLA-A*01:01 B2M MHCI VTDAAHLLI ZNT8 HomoSapiens PMID:34811538 tetramer-sort yes amplicon-seq Naive T cells T1D T1D_5 chip0423_615937 PBMC +10078 CASSLTVLAGPNTEAFF TRBV7-3*01 TRBJ1-1*01 HLA-B*08:01 B2M MHCI RAKFKQLL BZLF1 EBV PMID:34811538 tetramer-sort yes amplicon-seq effector memory T cells T1D T1D_4 chip0423_614629 PBMC +10079 CASSSTGSGELFF TRBV5-1*01 TRBJ2-2*01 HLA-B*08:01 B2M MHCI QAKWRLQTL EBNA3A EBV PMID:34811538 tetramer-sort yes amplicon-seq Naive T cells healthy healthy_4 chip0423_538548 PBMC +10080 CAVRVGL??tGNEKLTF TRAV21*01 TRAJ48*01 HLA-B*08:01 B2M MHCI RAKFKQLL BZLF1 EBV PMID:34811538 tetramer-sort yes amplicon-seq effector memory T cells T1D T1D_5 chip0423_522158 PBMC +10081 CASTSTETVDGYTF TRBV5-4*01 TRBJ1-2*01 HLA-B*08:01 B2M MHCI QAKWRLQTL EBNA3A EBV PMID:34811538 tetramer-sort yes amplicon-seq effector memory T cells T1D T1D_6 chip0423_661635 PBMC +10082 CASSKRGGGGGYTF TRBV6-1*01 TRBJ1-2*01 HLA-A*02:01 B2M MHCI FLYALALLL LMP2 EBV PMID:34811538 tetramer-sort yes amplicon-seq effector memory T cells healthy healthy_3 chip0423_207067 PBMC +10083 CILPLAGGTSYGKLTF TRAV26-2*01 TRAJ52*01 CASSSGQAYEQYF TRBV7-8*01 TRBJ2-7*01 HLA-B*08:01 B2M MHCI FLRGRAYGL EBNA3A EBV PMID:34811538 tetramer-sort yes amplicon-seq effector T cells healthy healthy_4 chip0423_171995 PBMC +10084 CIVRVTNFGNEKLTF TRAV26-1*01 TRAJ48*01 HLA-A*02:01 B2M MHCI LLAGIGTVPI PGT HomoSapiens PMID:34811538 tetramer-sort yes amplicon-seq Naive T cells T1D T1D_6 chip0423_804418 PBMC +10085 CASSLAVGEGPQHF TRBV7-9*01 TRBJ1-5*01 HLA-B*08:01 B2M MHCI RAKFKQLL BZLF1 EBV PMID:34811538 tetramer-sort yes amplicon-seq effector T cells T1D T1D_4 chip0423_785543 PBMC +10086 CAVKDTDKLIF TRAV8-1*01 TRAJ34*01 CASSATGDYYGYTF TRBV3-1*01 TRBJ1-2*01 HLA-A*02:01 B2M MHCI YVLDHLIVV BRLF1 EBV PMID:34811538 tetramer-sort yes amplicon-seq effector T cells healthy healthy_4 chip0423_609364 PBMC +10087 CASNLAGGEIDDTQYL TRBV5-6*01 TRBJ2-3*01 HLA-A*02:01 B2M MHCI LLAGIGTVPI PGT HomoSapiens PMID:34811538 tetramer-sort yes amplicon-seq effector memory T cells healthy healthy_3 chip0423_570056 PBMC +10088 CVLPLAGGSRYGKLTF TRAV26-2*01 TRAJ52*01 CASSSGQAYEQYF TRBV7-8*01 TRBJ2-7*01 HLA-B*08:01 B2M MHCI FLRGRAYGL EBNA3A EBV PMID:34811538 tetramer-sort yes amplicon-seq effector T cells healthy healthy_4 chip0423_486301 PBMC +10089 CSASDGPGQETQYF TRBV20-1*01 TRBJ2-5*01 HLA-A*02:01 B2M MHCI RGPGRAFVTI GP160 HIV-1 PMID:34811538 tetramer-sort yes amplicon-seq Naive T cells healthy healthy_3 chip0423_64026 PBMC +10092 CALGGGRSGFQRRVF TRAV14/DV4*01 TRAJ8*01 CASSLGRDTEAFF TRBV7-6*01 TRBJ1-1*01 HLA-B*08:01 B2M MHCI AALQRLAAV PTPRN HomoSapiens PMID:34811538 tetramer-sort yes amplicon-seq Naive T cells T1D T1D_5 chip0423_605785 PBMC +10094 CAISPHGQYEQYF TRBV10-3*01 TRBJ2-7*01 HLA-A*02:01 B2M MHCI VLFGLGFAI IGRP HomoSapiens PMID:34811538 tetramer-sort yes amplicon-seq Naive T cells healthy healthy_3 chip0423_28203 PBMC +10095 CASSSLSGGAGNEQSF TRBV7-9*01 TRBJ2-1*01 HLA-B*08:01 B2M MHCI RAKFKQLL BZLF1 EBV PMID:34811538 tetramer-sort yes amplicon-seq transitional T cells between effector and memory populations T1D T1D_5 chip0423_10248 PBMC +10096 CAATETSYDKVIF TRAV13-1*01 TRAJ50*01 CASSRLGMNTEAFF TRBV7-9*01 TRBJ1-1*01 HLA-B*08:01 B2M MHCI RAKFKQLL BZLF1 EBV PMID:34811538 tetramer-sort yes amplicon-seq effector memory T cells T1D T1D_5 chip0423_688971 PBMC +10097 CSVGTGGTNEKLFF TRBV29-1*01 TRBJ1-4*01 HLA-A*02:01 B2M MHCI GLCTLVAML BLMF1 EBV PMID:34811538 tetramer-sort yes amplicon-seq effector T cells T1D T1D_6 chip0423_514512 PBMC +10098 CASSPGPGNEQFF TRBV7-9*01 TRBJ2-1*01 HLA-A*02:01 B2M MHCI KMYAFTLES ZNT8 HomoSapiens PMID:34811538 tetramer-sort yes amplicon-seq Naive T cells T1D T1D_4 chip0423_169688 PBMC +10099 CALEEDNARLMF TRAV38-1*01 TRAJ31*01 CASSLRLSYEQYF TRBV27*01 TRBJ2-7*01 HLA-B*08:01 B2M MHCI RAKFKQLL BZLF1 EBV PMID:34811538 tetramer-sort yes amplicon-seq effector memory T cells healthy healthy_5 chip0423_459388 PBMC +10100 CASSDIREGQGEAFF TRBV10-2*01 TRBJ1-1*01 HLA-B*08:01 B2M MHCI QAKWRLQTL EBNA3A EBV PMID:34811538 tetramer-sort yes amplicon-seq central memory T cells T1D T1D_6 chip0423_821407 PBMC +10101 CSAAGGNTIYF TRBV29-1*01 TRBJ1-3*01 HLA-B*08:01 B2M MHCI QAKWRLQTL EBNA3A EBV PMID:34811538 tetramer-sort yes amplicon-seq Naive T cells T1D T1D_5 chip0423_881392 PBMC +10102 CAVNGGSQGNLIF TRAV12-2*01 TRAJ42*01 CASSYLWSEQYF TRBV6-2*01,TRBV6-3*01 TRBJ2-7*01 HLA-A*02:01 B2M MHCI ALAGIGILTV MART1 HomoSapiens PMID:34811538 tetramer-sort yes amplicon-seq central memory T cells healthy healthy_3 chip0423_832745 PBMC +10103 CILPLAGGTSYGKLTF TRAV26-2*01 TRAJ52*01 CASSSGQAYEQYF TRBV7-8*01 TRBJ2-7*01 HLA-B*08:01 B2M MHCI FLRGRAYGL EBNA3A EBV PMID:34811538 tetramer-sort yes amplicon-seq effector memory T cells healthy healthy_4 chip0423_167481 PBMC +10104 CAVNQGGKLIF TRAV12-2*01 TRAJ23*01 CASSPDSGMDEQFF TRBV7-9*01 TRBJ2-1*01 HLA-A*02:01 B2M MHCI LLAGIGTVPI PGT HomoSapiens PMID:34811538 tetramer-sort yes amplicon-seq central memory T cells healthy healthy_3 chip0423_112440 PBMC +10105 CAAPHPAGTYKYIF TRAV29/DV5*01 TRAJ40*01 CASSQGPGYGDTQYF TRBV4-1*01 TRBJ2-3*01 HLA-B*08:01 B2M MHCI MALWMRLL INS HomoSapiens PMID:34811538 tetramer-sort yes amplicon-seq Naive T cells T1D T1D_5 chip0423_383961 PBMC +10106 CASSVGWTGTGETQYF TRBV9*01 TRBJ2-5*01 HLA-A*02:01 B2M MHCI GILGFVFTL M1 InfluenzaA PMID:34811538 tetramer-sort yes amplicon-seq central memory T cells healthy healthy_4 chip0423_670815 PBMC +10107 CVVEYPGg?gGYLSVTC TRAV2*01 TRAJ13*01 HLA-B*08:01 B2M MHCI WPTVRERM Nef HIV-1 PMID:34811538 tetramer-sort yes amplicon-seq Naive T cells healthy healthy_5 chip0423_504659 PBMC +10108 CASSYPQGYYGYTF TRBV12-3*01,TRBV12-4*01 TRBJ1-2*01 HLA-A*01:01 B2M MHCI HSNLNDATY NP InfluenzaA PMID:34811538 tetramer-sort yes amplicon-seq Naive T cells T1D T1D_6 chip0423_397693 PBMC +10109 CASSPGLMNTEAFF TRBV4-2*01 TRBJ1-1*01 HLA-A*02:01 B2M MHCI ALAGIGILTV MART1 HomoSapiens PMID:34811538 tetramer-sort yes amplicon-seq Naive T cells T1D T1D_6 chip0423_716330 PBMC +10110 CAVRANDYKLSF TRAV8-6*01 TRAJ20*01 CASSLNGQETQYF TRBV7-3*01 TRBJ2-5*01 HLA-A*02:01 B2M MHCI GILGFVFTL M1 InfluenzaA PMID:34811538 tetramer-sort yes amplicon-seq Naive T cells T1D T1D_6 chip0423_62165 PBMC +10111 CALDSIGRGSTLGRLYF TRAV39*01 TRAJ18*01 HLA-A*02:01 B2M MHCI GILGFVFTL M1 InfluenzaA PMID:34811538 tetramer-sort yes amplicon-seq effector T cells healthy healthy_3 chip0423_497475 PBMC +10112 CASSLGQAYEQYF TRBV7-8*01 TRBJ2-7*01 HLA-B*08:01 B2M MHCI FLRGRAYGL EBNA3A EBV PMID:34811538 tetramer-sort yes amplicon-seq effector memory T cells T1D T1D_6 chip0423_533319 PBMC +10113 CASSLPPW??gAAYNEQFF TRBV4-3*01 TRBJ2-1*01 HLA-B*08:01 B2M MHCI FLRGRAYGL EBNA3A EBV PMID:34811538 tetramer-sort yes amplicon-seq effector T cells T1D T1D_6 chip0423_323884 PBMC +10114 CARSGSGSARPLTF TRAV36/DV7*01 TRAJ22*01 CASIGKTTSTDTQYF TRBV19*01 TRBJ2-3*01 HLA-A*01:01 B2M MHCI CTELKLSDY NP InfluenzaA PMID:34811538 tetramer-sort yes amplicon-seq effector T cells healthy healthy_3 chip0423_54413 PBMC +10115 CATDALRALTF TRAV17*01 TRAJ5*01 CASSIGWEAFF TRBV19*01 TRBJ1-1*01 HLA-A*01:01 B2M MHCI LTSLTILQLY G6PC2 HomoSapiens PMID:34811538 tetramer-sort yes amplicon-seq transitional T cells between effector and memory populations healthy healthy_3 chip0423_40305 PBMC +10117 CAVGAGYSTLTF TRAV12-2*01 TRAJ11*01 HLA-A*02:01 B2M MHCI ALAGIGILTV MART1 HomoSapiens PMID:34811538 tetramer-sort yes amplicon-seq Naive T cells healthy healthy_3 chip0423_763494 PBMC +10119 CAATETSYDKVIF TRAV13-1*01 TRAJ50*01 CASSPPGRNEKLFF TRBV12-3*01,TRBV12-4*01 TRBJ1-4*01 HLA-B*08:01 B2M MHCI RAKFKQLL BZLF1 EBV PMID:34811538 tetramer-sort yes amplicon-seq effector memory T cells T1D T1D_5 chip0423_125786 PBMC +10121 CASSLLGADTHEQSV TRBV11-1*01,TRBV7-9*01 TRBJ2-1*01 HLA-B*08:01 B2M MHCI RAKFKQLL BZLF1 EBV PMID:34811538 tetramer-sort yes amplicon-seq effector memory T cells T1D T1D_5 chip0423_740560 PBMC +10122 CAALGSDGQKLLF TRAV1-2*01 TRAJ16*01 CASSRGLPSGTEAFF TRBV4-1*01 TRBJ1-1*01 HLA-A*02:01 B2M MHCI ELAGIGILTV MART1 HomoSapiens PMID:34811538 tetramer-sort yes amplicon-seq Naive T cells healthy healthy_3 chip0423_482351 PBMC +10125 CASSSGPAYEQYF TRBV7-8*01 TRBJ2-7*01 HLA-B*08:01 B2M MHCI FLRGRAYGL EBNA3A EBV PMID:34811538 tetramer-sort yes amplicon-seq effector memory T cells healthy healthy_4 chip0423_861164 PBMC +10126 CASSEMWGAPLHF TRBV2*01 TRBJ1-6*01 HLA-A*01:01 B2M MHCI CTELKLSDY NP InfluenzaA PMID:34811538 tetramer-sort yes amplicon-seq effector T cells healthy healthy_3 chip0423_803986 PBMC +10127 CAGSEGGNKLVF TRAV12-2*01 TRAJ47*01 CAWEGTSGVFEQYF TRBV30*01 TRBJ2-7*01 HLA-A*02:01 B2M MHCI LLAGIGTVPI PGT HomoSapiens PMID:34811538 tetramer-sort yes amplicon-seq Naive T cells T1D T1D_4 chip0423_632999 PBMC +10128 CASSLGQGYEQYF TRBV5-1*01 TRBJ2-7*01 HLA-A*02:01 B2M MHCI RQFGPDWIVA ADH HomoSapiens PMID:34811538 tetramer-sort yes amplicon-seq Naive T cells healthy healthy_4 chip0423_103798 PBMC +10129 CILPLAGGTSYGKLTF TRAV26-2*01 TRAJ52*01 CASSLGQAYEQYF TRBV7-8*01 TRBJ2-7*01 HLA-B*08:01 B2M MHCI FLRGRAYGL EBNA3A EBV PMID:34811538 tetramer-sort yes amplicon-seq effector memory T cells T1D T1D_6 chip0423_747259 PBMC +10130 CAVLPSNDYKLSF TRAV21*01,TRAV12-3*01 TRAJ20*01 HLA-A*01:01 B2M MHCI CTELKLSDY NP InfluenzaA PMID:34811538 tetramer-sort yes amplicon-seq transitional T cells between effector and memory populations healthy healthy_3 chip0423_249695 PBMC +10131 CAVVLVtt?GVYFLTF TRAV8-3*01 TRAJ39*01 CASSARDDYDEQYF TRBV9*01 TRBJ2-7*01 HLA-A*01:01 B2M MHCI VTDAAHLLI ZNT8 HomoSapiens PMID:34811538 tetramer-sort yes amplicon-seq Naive T cells healthy healthy_3 chip0423_36719 PBMC +10133 CAVCVSPWVVMIIF TRAV3*01 TRAJ30*01 CASSLGGGEGASEQFF TRBV7-6*01 TRBJ2-1*01 HLA-B*08:01 B2M MHCI FLRGRAYGL EBNA3A EBV PMID:34811538 tetramer-sort yes amplicon-seq effector memory T cells T1D T1D_4 chip0423_112491 PBMC +10134 CAVSDLGRDDKIIF TRAV8-4*01 TRAJ30*01 CASRMGGNTEAFF TRBV6-1*01 TRBJ1-1*01 HLA-A*02:01 B2M MHCI GILGFVFTL M1 InfluenzaA PMID:34811538 tetramer-sort yes amplicon-seq transitional T cells between effector and memory populations T1D T1D_6 chip0423_107242 PBMC +10135 CAVLPSNDYKLSF TRAV21*01 TRAJ20*01 CASIGKTTSTDTQYF TRBV19*01 TRBJ2-3*01 HLA-A*01:01 B2M MHCI CTELKLSDY NP InfluenzaA PMID:34811538 tetramer-sort yes amplicon-seq effector T cells healthy healthy_3 chip0423_105246 PBMC +10137 CVVNGENARLMF TRAV12-1*01 TRAJ31*01 CASSEMWGAPLHF TRBV2*01 TRBJ1-6*01 HLA-A*01:01 B2M MHCI CTELKLSDY NP InfluenzaA PMID:34811538 tetramer-sort yes amplicon-seq transitional T cells between effector and memory populations healthy healthy_3 chip0423_76088 PBMC +10139 CAALETSYDKVIF TRAV13-1*01 TRAJ50*01 CASSPDGSTGELFF TRBV12-3*01,TRBV12-4*01 TRBJ2-2*01 HLA-B*08:01 B2M MHCI RAKFKQLL BZLF1 EBV PMID:34811538 tetramer-sort yes amplicon-seq effector memory T cells T1D T1D_5 chip0423_687769 PBMC +10141 RAVRGGAGAPPLAF TRAV8-6*01 TRAJ54*01 CASSFAVLAGPDTEAFF TRBV7-3*01 TRBJ1-1*01 HLA-B*08:01 B2M MHCI RAKFKQLL BZLF1 EBV PMID:34811538 tetramer-sort yes amplicon-seq effector T cells T1D T1D_4 chip0423_284068 PBMC +10142 CASSFLENTGELFF TRBV12-3*01,TRBV12-4*01 TRBJ2-2*01 HLA-A*02:01 B2M MHCI CLGGLLTMV LMP2A EBV PMID:34811538 tetramer-sort yes amplicon-seq Naive T cells healthy healthy_4 chip0423_556104 PBMC +10144 CASSQLGSPNTEAFF TRBV3-1*01 TRBJ1-1*01 HLA-A*01:01 B2M MHCI CTELKLSDY NP InfluenzaA PMID:34811538 tetramer-sort yes amplicon-seq transitional T cells between effector and memory populations healthy healthy_3 chip0423_736509 PBMC +10145 CASSQEGGLNYGYTF TRBV4-1*01 TRBJ1-2*01 HLA-B*08:01 B2M MHCI CPLSKILL LMP2A EBV PMID:34811538 tetramer-sort yes amplicon-seq Naive T cells T1D T1D_6 chip0423_756540 PBMC +10146 CAGRP*ANAGGTSYGKLTF TRAV35*01 TRAJ52*01 HLA-A*01:01 B2M MHCI VTDAAHLLI ZNT8 HomoSapiens PMID:34811538 tetramer-sort yes amplicon-seq Naive T cells T1D T1D_6 chip0423_745697 PBMC +10147 CAVADQGRSYYSASRFF TRAV2*01 TRAJ34*01 CASSLNVGEGAGNTIYF TRBV7-6*01 TRBJ1-3*01 HLA-B*08:01 B2M MHCI RAKFKQLL BZLF1 EBV PMID:34811538 tetramer-sort yes amplicon-seq effector memory T cells healthy healthy_4 chip0423_731327 PBMC +10148 CAVVPSGGYQKVTF TRAV8-3*01 TRAJ13*01 HLA-B*08:01 B2M MHCI RAKFKQLL BZLF1 EBV PMID:34811538 tetramer-sort yes amplicon-seq effector T cells T1D T1D_5 chip0423_413494 PBMC +10149 CAYRSPNYGGSQGNLIF TRAV38-2/DV8*01 TRAJ42*01 CAIRGQDPYEQYF TRBV10-3*01 TRBJ2-7*01 HLA-A*01:01 B2M MHCI HSNLNDATY NP InfluenzaA PMID:34811538 tetramer-sort yes amplicon-seq Naive T cells T1D T1D_5 chip0423_403400 PBMC +10151 CASSLAVGEGPQHF TRBV7-9*01 TRBJ1-5*01 HLA-B*08:01 B2M MHCI RAKFKQLL BZLF1 EBV PMID:34811538 tetramer-sort yes amplicon-seq effector T cells T1D T1D_4 chip0423_442260 PBMC +10152 CAGEEDMga?GSQGNLIF TRAV27*01 TRAJ42*01 CSALRDRDNTGELFF TRBV20-1*01 TRBJ2-2*01 HLA-A*02:01 B2M MHCI VVTGVLVYL ZNT8 HomoSapiens PMID:34811538 tetramer-sort yes amplicon-seq Naive T cells T1D T1D_4 chip0423_825787 PBMC +10153 CASSQMSDTQYF TRBV6-2*01,TRBV6-3*01 TRBJ2-3*01 HLA-A*02:01 B2M MHCI YVLDHLIVV BRLF1 EBV PMID:34811538 tetramer-sort yes amplicon-seq effector memory T cells healthy healthy_3 chip0423_760272 PBMC +10154 CAVNAVDSSYKLIF TRAV12-2*01 TRAJ12*01 CASSLSANGNQPQHF TRBV27*01 TRBJ1-5*01 HLA-A*02:01 B2M MHCI CLGGLLTMV LMP2A EBV PMID:34811538 tetramer-sort yes amplicon-seq Naive T cells T1D T1D_6 chip0423_423396 PBMC +10155 CAMSLSNFGNEKLTF TRAV12-3*01 TRAJ48*01 CASSFGGPNQPQHF TRBV5-6*01 TRBJ1-5*01 HLA-A*02:01 B2M MHCI LLAGIGTVPI PGT HomoSapiens PMID:34811538 tetramer-sort yes amplicon-seq Naive T cells T1D T1D_4 chip0423_407816 PBMC +10156 CILPLAGGTSYRKLTF TRAV26-2*01 TRAJ52*01 CASSSGQAYEQYF TRBV7-8*01 TRBJ2-7*01 HLA-B*08:01 B2M MHCI FLRGRAYGL EBNA3A EBV PMID:34811538 tetramer-sort yes amplicon-seq transitional T cells between effector and memory populations healthy healthy_4 chip0423_779259 PBMC +10157 CAYMGNADGTSYGTLTF TRAV38-2/DV8*01 TRAJ52*01 CASSTGYYGYTF TRBV19*01 TRBJ1-2*01 HLA-A*02:01 B2M MHCI GILGFVFTL M1 InfluenzaA PMID:34811538 tetramer-sort yes amplicon-seq transitional T cells between effector and memory populations T1D T1D_4 chip0423_732031 PBMC +10158 CILPLAGGTRYGKLTF TRAV26-2*01 TRAJ52*01 CASSSGQAYEQYF TRBV7-8*01 TRBJ2-7*01 HLA-B*08:01 B2M MHCI FLRGRAYGL EBNA3A EBV PMID:34811538 tetramer-sort yes amplicon-seq effector memory T cells healthy healthy_4 chip0423_14228 PBMC +10159 CASSDLRQTSSYNEQFF TRBV19*01 TRBJ2-1*01 HLA-A*01:01 B2M MHCI CTELKLSDY NP InfluenzaA PMID:34811538 tetramer-sort yes amplicon-seq transitional T cells between effector and memory populations healthy healthy_3 chip0423_796215 PBMC +10161 CILVWF??tARQLTF TRAV26-2*01 TRAJ22*01 HLA-A*01:01 B2M MHCI CTELKLSDY NP InfluenzaA PMID:34811538 tetramer-sort yes amplicon-seq central memory T cells healthy healthy_3 chip0423_454623 PBMC +10163 CASSELGDTQYF TRBV25-1*01 TRBJ2-3*01 HLA-A*02:01 B2M MHCI GILGFVFTL M1 InfluenzaA PMID:34811538 tetramer-sort yes amplicon-seq central memory T cells healthy healthy_4 chip0423_526376 PBMC +10164 CVVNGENARLMF TRAV12-1*01 TRAJ31*01 HLA-A*01:01 B2M MHCI CTELKLSDY NP InfluenzaA PMID:34811538 tetramer-sort yes amplicon-seq transitional T cells between effector and memory populations healthy healthy_3 chip0423_417606 PBMC +10165 CAGNYGGSQGNLIF TRAV25*01 TRAJ42*01 HLA-A*02:01 B2M MHCI GILGFVFTL M1 InfluenzaA PMID:34811538 tetramer-sort yes amplicon-seq transitional T cells between effector and memory populations healthy healthy_3 chip0423_804251 PBMC +10166 CAVKDTDKLIF TRAV8-1*01 TRAJ34*01 CASSLPSGGGPEQYF TRBV5-4*01 TRBJ2-7*01 HLA-A*02:01 B2M MHCI YVLDHLIVV BRLF1 EBV PMID:34811538 tetramer-sort yes amplicon-seq effector T cells healthy healthy_4 chip0423_630271 PBMC +10167 CASSQVRGGYEQYF TRBV3-1*01 TRBJ2-7*01 HLA-B*08:01 B2M MHCI RAKFKQLL BZLF1 EBV PMID:34811538 tetramer-sort yes amplicon-seq effector T cells T1D T1D_6 chip0423_391227 PBMC +10168 CASSPLGSNEKLFF TRBV7-9*01 TRBJ1-4*01 HLA-B*08:01 B2M MHCI RAKFKQLL BZLF1 EBV PMID:34811538 tetramer-sort yes amplicon-seq transitional T cells between effector and memory populations T1D T1D_5 chip0423_146303 PBMC +10169 CASSVAPGQGPFF TRBV9*01 TRBJ2-1*01 HLA-A*02:01 B2M MHCI LLAGIGTVPI PGT HomoSapiens PMID:34811538 tetramer-sort yes amplicon-seq Naive T cells T1D T1D_6 chip0423_32937 PBMC +10170 CSVIVAa?gGG*LLF TRAV26-1*01 TRAJ23*01 CSAGRDGTNEKLFF TRBV29-1*01 TRBJ1-4*01 HLA-A*01:01 B2M MHCI CTELKLSDY NP InfluenzaA PMID:34811538 tetramer-sort yes amplicon-seq transitional T cells between effector and memory populations healthy healthy_3 chip0423_729660 PBMC +10171 CASSLLGSVDTEAFF TRBV7-9*01 TRBJ1-1*01 HLA-B*08:01 B2M MHCI RAKFKQLL BZLF1 EBV PMID:34811538 tetramer-sort yes amplicon-seq effector T cells T1D T1D_5 chip0423_874494 PBMC +10172 CAASEEKLTF TRAV13-1*01 TRAJ48*01 HLA-B*08:01 B2M MHCI RAKFKQLL BZLF1 EBV PMID:34811538 tetramer-sort yes amplicon-seq effector memory T cells T1D T1D_5 chip0423_784816 PBMC +10174 CAASADSDYQLIW TRAV29/DV5*01 TRAJ33*01 CASSLAGVVGGYGYTF TRBV7-8*01 TRBJ1-2*01 HLA-A*02:01 B2M MHCI RLLPLLALLAL INS HomoSapiens PMID:34811538 tetramer-sort yes amplicon-seq Naive T cells healthy healthy_3 chip0423_706720 PBMC +10175 CAVNPTSYDKVIF TRAV12-2*01 TRAJ50*01 CANSVSPDNEQLF TRBV9*01 TRBJ2-1*01 HLA-A*02:01 B2M MHCI LLAGIGTVPI PGT HomoSapiens PMID:34811538 tetramer-sort yes amplicon-seq Naive T cells healthy healthy_3 chip0423_341948 PBMC +10176 CASSLAVGEGPQHF TRBV7-9*01 TRBJ1-5*01 HLA-B*08:01 B2M MHCI RAKFKQLL BZLF1 EBV PMID:34811538 tetramer-sort yes amplicon-seq effector T cells T1D T1D_4 chip0423_339837 PBMC +10177 CAEGVct?ARQLTF TRAV13-2*01 TRAJ22*01 HLA-B*08:01 B2M MHCI RAKFKQLL BZLF1 EBV PMID:34811538 tetramer-sort yes amplicon-seq effector T cells healthy healthy_4 chip0423_117823 PBMC +10178 CAEHSYTGNRFYF TRAV13-2*01 TRAJ49*01 CASSPHREQFF TRBV9*01 TRBJ2-1*01 HLA-A*01:01 B2M MHCI QQDKHYDLSY GAD2 HomoSapiens PMID:34811538 tetramer-sort yes amplicon-seq Naive T cells healthy healthy_5 chip0423_306678 PBMC +10179 CSAGRDGTNEKLFF TRBV29-1*01 TRBJ1-4*01 HLA-A*02:01 B2M MHCI GLCTLVAML BLMF1 EBV PMID:34811538 tetramer-sort yes amplicon-seq effector T cells T1D T1D_6 chip0423_779242 PBMC +10182 CAVKEGGKLIF TRAV8-1*01 TRAJ23*01 CASSQMSDTQYF TRBV6-2*01,TRBV6-3*01 TRBJ2-3*01 HLA-A*02:01 B2M MHCI YVLDHLIVV BRLF1 EBV PMID:34811538 tetramer-sort yes amplicon-seq effector memory T cells healthy healthy_3 chip0423_246764 PBMC +10184 YGADNASGPYPSFF TRAV34*01 TRAJ40*01 CSAGSGEGYEQYF TRBV29-1*01 TRBJ2-7*01 HLA-B*08:01 B2M MHCI RAKFKQLL BZLF1 EBV PMID:34811538 tetramer-sort yes amplicon-seq effector T cells healthy healthy_4 chip0423_635593 PBMC +10185 CASSDRTSVSYNEQFF TRBV6-4*01 TRBJ2-1*01 HLA-A*01:01 B2M MHCI LTSLTILQLY G6PC2 HomoSapiens PMID:34811538 tetramer-sort yes amplicon-seq Naive T cells T1D T1D_4 chip0423_351954 PBMC +10186 CAETGSNQAGTALIF TRAV13-2*01 TRAJ15*01 CASSQDGYGGDQPQHF TRBV4-1*01 TRBJ1-5*01 HLA-A*01:01 B2M MHCI CTELKLSDY NP InfluenzaA PMID:34811538 tetramer-sort yes amplicon-seq transitional T cells between effector and memory populations healthy healthy_3 chip0423_168514 PBMC +10188 CASSLAVGEGPQHF TRBV7-9*01 TRBJ1-5*01 HLA-B*08:01 B2M MHCI RAKFKQLL BZLF1 EBV PMID:34811538 tetramer-sort yes amplicon-seq effector memory T cells T1D T1D_4 chip0423_276027 PBMC +10189 CAAGGYQKVTF TRAV12-1*01 TRAJ13*01 HLA-B*08:01 B2M MHCI YAYAKWKL ZNT8 HomoSapiens PMID:34811538 tetramer-sort yes amplicon-seq Naive T cells T1D T1D_5 chip0423_854317 PBMC +10190 CASSLGQAYEQYF TRBV7-8*01 TRBJ2-7*01 HLA-B*08:01 B2M MHCI FLRGRAYGL EBNA3A EBV PMID:34811538 tetramer-sort yes amplicon-seq effector memory T cells T1D T1D_6 chip0423_782454 PBMC +10191 CATVGCSGYSTLTF TRAV17*01 TRAJ11*01 HLA-A*02:01 B2M MHCI FLYALALLL LMP2 EBV PMID:34811538 tetramer-sort yes amplicon-seq central memory T cells T1D T1D_4 chip0423_712828 PBMC +10192 CASSS*TRga??caATNEKLFF TRBV27*01 TRBJ1-4*01 HLA-A*02:01 B2M MHCI LLAGIGTVPI PGT HomoSapiens PMID:34811538 tetramer-sort yes amplicon-seq Naive T cells healthy healthy_3 chip0423_35260 PBMC +10193 CASSQSDRGSGYTF TRBV14*01 TRBJ1-2*01 HLA-A*02:01 B2M MHCI LLAGIGTVPI PGT HomoSapiens PMID:34811538 tetramer-sort yes amplicon-seq Naive T cells T1D T1D_6 chip0423_226126 PBMC +10194 CAMSGGNFGNEKLTF TRAV12-3*01 TRAJ48*01 CASSYSLAEVSIDTQYS TRBV6-5*01 TRBJ2-3*01 HLA-A*02:01 B2M MHCI LLAGIGTVPI PGT HomoSapiens PMID:34811538 tetramer-sort yes amplicon-seq Naive T cells healthy healthy_3 chip0423_606199 PBMC +10197 CASSPGQDGYTF TRBV7-9*01 TRBJ1-2*01 HLA-B*08:01 B2M MHCI RAKFKQLL BZLF1 EBV PMID:34811538 tetramer-sort yes amplicon-seq effector memory T cells T1D T1D_5 chip0423_96702 PBMC +10198 CASSSLDRGPNTGELFF TRBV12-3*01,TRBV12-4*01 TRBJ2-2*01 HLA-B*08:01 B2M MHCI RAKFKQLL BZLF1 EBV PMID:34811538 tetramer-sort yes amplicon-seq effector memory T cells T1D T1D_5 chip0423_691694 PBMC +10199 CSVEEWGGKSSGANVLTF TRBV29-1*01 TRBJ2-6*01 HLA-A*02:01 B2M MHCI IQATVMIIV ZNT8 HomoSapiens PMID:34811538 tetramer-sort yes amplicon-seq Naive T cells healthy healthy_4 chip0423_668241 PBMC +10200 CAVRDIHTGGFKTIF TRAV3*01 TRAJ9*01 HLA-A*02:01 B2M MHCI GILGFVFTL M1 InfluenzaA PMID:34811538 tetramer-sort yes amplicon-seq transitional T cells between effector and memory populations T1D T1D_6 chip0423_18387 PBMC +10201 CASSLNVGEGAGNTIYF TRBV7-6*01 TRBJ1-3*01 HLA-B*08:01 B2M MHCI RAKFKQLL BZLF1 EBV PMID:34811538 tetramer-sort yes amplicon-seq effector memory T cells healthy healthy_4 chip0423_800508 PBMC +10202 CAGAHGRSQGNLIF TRAV27*01 TRAJ42*01 CASRSSSASEAFC TRBV19*01 TRBJ1-1*01 HLA-A*02:01 B2M MHCI GILGFVFTL M1 InfluenzaA PMID:34811538 tetramer-sort yes amplicon-seq transitional T cells between effector and memory populations healthy healthy_3 chip0423_802343 PBMC +10203 YAASVNNDMRF TRAV29/DV5*01 TRAJ43*01 CASSLNGRAYGGELFF TRBV5-5*01 TRBJ2-2*01 HLA-B*08:01 B2M MHCI LRLRLDQL GFAP HomoSapiens PMID:34811538 tetramer-sort yes amplicon-seq Naive T cells T1D T1D_4 chip0423_118129 PBMC +10204 CAVWRDGAYEQYF TRBV28*01 TRBJ2-7*01 HLA-A*02:01 B2M MHCI YLLEMLWRL LMP1 EBV PMID:34811538 tetramer-sort yes amplicon-seq transitional T cells between effector and memory populations T1D T1D_4 chip0423_544978 PBMC +10206 CAVAETSNTGGFKTIF TRAV12-2*01 TRAJ9*01 CASSLMAGSTDTQYF TRBV27*01 TRBJ2-3*01 HLA-A*02:01 B2M MHCI YLQQNWWTL LMP1 EBV PMID:34811538 tetramer-sort yes amplicon-seq central memory T cells T1D T1D_4 chip0423_347663 PBMC +10208 CAVEKKNTDKLIF TRAV12-2*01 TRAJ34*01 CASSLNVGga??ggAQENTIDF TRBV7-6*01 TRBJ1-3*01 HLA-B*08:01 B2M MHCI RAKFKQLL BZLF1 EBV PMID:34811538 tetramer-sort yes amplicon-seq effector T cells healthy healthy_4 chip0423_772703 PBMC +10209 CAVRPQAGPALLF TRAV8-1*01 TRAJ15*01 CATSDLTDTQYF TRBV24-1*01 TRBJ2-3*01 HLA-A*02:01 B2M MHCI YVLDHLIVV BRLF1 EBV PMID:34811538 tetramer-sort yes amplicon-seq Naive T cells healthy healthy_3 chip0423_88641 PBMC +10210 CAVRGTGTLIF TRAV8-1*01 TRAJ34*01 CASSYSAGFTGELFF TRBV6-5*01 TRBJ2-2*01 HLA-A*02:01 B2M MHCI YVLDHLIVV BRLF1 EBV PMID:34811538 tetramer-sort yes amplicon-seq effector memory T cells healthy healthy_4 chip0423_788529 PBMC +10211 CAISISNFGNEKLTF TRAV12-3*01 TRAJ48*01 CASSRTEANTEAFF TRBV28*01 TRBJ1-1*01 HLA-A*02:01 B2M MHCI LLAGIGTVPI PGT HomoSapiens PMID:34811538 tetramer-sort yes amplicon-seq Naive T cells T1D T1D_6 chip0423_715884 PBMC +10212 CAEPETYYAKVIL TRAV13-2*01 TRAJ50*01 CASSFTSGTDPELFF TRBV7-9*01 TRBJ2-2*01 HLA-B*08:01 B2M MHCI RAKFKQLL BZLF1 EBV PMID:34811538 tetramer-sort yes amplicon-seq effector T cells T1D T1D_5 chip0423_333412 PBMC +10213 CASSPDGSTGELFF TRBV12-3*01,TRBV12-4*01 TRBJ2-2*01 HLA-B*08:01 B2M MHCI RAKFKQLL BZLF1 EBV PMID:34811538 tetramer-sort yes amplicon-seq effector memory T cells T1D T1D_5 chip0423_755598 PBMC +10214 CASSPRLLSGTGELFF TRBV7-9*01 TRBJ2-2*01 HLA-A*02:01 B2M MHCI LLAGIGTVPI PGT HomoSapiens PMID:34811538 tetramer-sort yes amplicon-seq central memory T cells healthy healthy_3 chip0423_734320 PBMC +10215 CASSLAVGEGPQHF TRBV7-9*01 TRBJ1-5*01 HLA-B*08:01 B2M MHCI RAKFKQLL BZLF1 EBV PMID:34811538 tetramer-sort yes amplicon-seq effector memory T cells T1D T1D_4 chip0423_480231 PBMC +10217 CAMREPYNNAGNMLTF TRAV14/DV4*01 TRAJ39*01 HLA-B*08:01 B2M MHCI RPIIRPATL NP InfluenzaA PMID:34811538 tetramer-sort yes amplicon-seq Naive T cells T1D T1D_6 chip0423_50323 PBMC +10219 CILPLAGGTSYGKLTF TRAV26-2*01 TRAJ52*01 CASSLGQAYEQYF TRBV7-8*01 TRBJ2-7*01 HLA-B*08:01 B2M MHCI FLRGRAYGL EBNA3A EBV PMID:34811538 tetramer-sort yes amplicon-seq effector memory T cells T1D T1D_6 chip0423_518913 PBMC +10221 CAMRAIEGANNLFF TRAV14/DV4*01 TRAJ36*01 CASSLSSGGRGEQYF TRBV4-1*01 TRBJ2-7*01 HLA-B*08:01 B2M MHCI RAKFKQLL BZLF1 EBV PMID:34811538 tetramer-sort yes amplicon-seq effector memory T cells T1D T1D_5 chip0423_708194 PBMC +10223 CASQLAGGTGELFF TRBV24-1*01 TRBJ2-2*01 HLA-B*08:01 B2M MHCI RAKFKQLL BZLF1 EBV PMID:34811538 tetramer-sort yes amplicon-seq effector memory T cells T1D T1D_5 chip0423_489143 PBMC +10225 CASSLGPSGQETQYF TRBV27*01 TRBJ2-5*01 HLA-A*02:01 B2M MHCI GILGFVFTL M1 InfluenzaA PMID:34811538 tetramer-sort yes amplicon-seq central memory T cells healthy healthy_4 chip0423_408167 PBMC +10226 CAVSDRNFNKFYF TRAV8-4*01 TRAJ21*01 HLA-A*01:01 B2M MHCI CTELKLSDY NP InfluenzaA PMID:34811538 tetramer-sort yes amplicon-seq central memory T cells healthy healthy_3 chip0423_357199 PBMC +10228 CACASSAANKLTF TRAV27*01 TRAJ17*01 CAISEPRDYLSYNEQFF TRBV10-3*01 TRBJ2-1*01 HLA-A*01:01 B2M MHCI LTSLTILQLY G6PC2 HomoSapiens PMID:34811538 tetramer-sort yes amplicon-seq Naive T cells T1D T1D_5 chip0423_860339 PBMC +10229 CASSFRGWSYEQYF TRBV27*01 TRBJ2-7*01 HLA-A*02:01 B2M MHCI VMNILLQYV GAD65 HomoSapiens PMID:34811538 tetramer-sort yes amplicon-seq Naive T cells healthy healthy_3 chip0423_747745 PBMC +10230 CTGSGFGREKLPF TRAV12-2*01 TRAJ48*01 CASSHQEGAIQPQHF TRBV4-1*01 TRBJ1-5*01 HLA-B*08:01 B2M MHCI RAKFKQLL BZLF1 EBV PMID:34811538 tetramer-sort yes amplicon-seq effector memory T cells T1D T1D_5 chip0423_671310 PBMC +10231 CASSAQVMNTEAFF TRBV19*01 TRBJ1-1*01 HLA-A*01:01 B2M MHCI VTDAAHLLI ZNT8 HomoSapiens PMID:34811538 tetramer-sort yes amplicon-seq Naive T cells healthy healthy_3 chip0423_661407 PBMC +10233 CASSEADGPQHF TRBV9*01 TRBJ1-5*01 HLA-A*01:01 B2M MHCI CTELKLSDY NP InfluenzaA PMID:34811538 tetramer-sort yes amplicon-seq transitional T cells between effector and memory populations healthy healthy_3 chip0423_301328 PBMC +10235 CALIFFW??tGSCRLIF TRAV19*01 TRAJ4*01 CASSEMWGAPLHF TRBV2*01 TRBJ1-6*01 HLA-A*01:01 B2M MHCI CTELKLSDY NP InfluenzaA PMID:34811538 tetramer-sort yes amplicon-seq transitional T cells between effector and memory populations healthy healthy_3 chip0423_716131 PBMC +10236 CASTGTSDSTDTQYF TRBV2*01 TRBJ2-3*01 HLA-A*01:01 B2M MHCI CTELKLSDY NP InfluenzaA PMID:34811538 tetramer-sort yes amplicon-seq transitional T cells between effector and memory populations healthy healthy_3 chip0423_85728 PBMC +10237 CASIPKQENTIYF TRBV12-3*01,TRBV12-4*01 TRBJ1-3*01 HLA-B*08:01 B2M MHCI RAKFKQLL BZLF1 EBV PMID:34811538 tetramer-sort yes amplicon-seq effector memory T cells T1D T1D_5 chip0423_50737 PBMC +10238 CASSELGDTQYF TRBV25-1*01 TRBJ2-3*01 HLA-A*02:01 B2M MHCI GILGFVFTL M1 InfluenzaA PMID:34811538 tetramer-sort yes amplicon-seq central memory T cells healthy healthy_4 chip0423_258463 PBMC +10239 CASSPGTGEDF TRBV28*01 TRBJ2-7*01 HLA-A*02:01 B2M MHCI ALAGIGILTV MART1 HomoSapiens PMID:34811538 tetramer-sort yes amplicon-seq Naive T cells healthy healthy_3 chip0423_720123 PBMC +10240 CASCEESCSLNQPQHF TRBV6-1*01 TRBJ1-5*01 HLA-B*08:01 B2M MHCI WMRLLPLL INS HomoSapiens PMID:34811538 tetramer-sort yes amplicon-seq Naive T cells T1D T1D_5 chip0423_297017 PBMC +10242 CASSQDGLAATSTDTQYF TRBV4-1*01 TRBJ2-3*01 HLA-A*01:01 B2M MHCI CTELKLSDY NP InfluenzaA PMID:34811538 tetramer-sort yes amplicon-seq transitional T cells between effector and memory populations healthy healthy_3 chip0423_876774 PBMC +10243 CASSATGDYYGYTF TRBV3-1*01 TRBJ1-2*01 HLA-A*02:01 B2M MHCI YVLDHLIVV BRLF1 EBV PMID:34811538 tetramer-sort yes amplicon-seq effector memory T cells healthy healthy_4 chip0423_545247 PBMC +10244 CILPLAGGTSYGKLTF TRAV26-2*01 TRAJ52*01 CASSSGQAYEQYF TRBV7-8*01 TRBJ2-7*01 HLA-B*08:01 B2M MHCI FLRGRAYGL EBNA3A EBV PMID:34811538 tetramer-sort yes amplicon-seq effector T cells healthy healthy_4 chip0423_91711 PBMC +10245 CAVRVREtt??caGYRTLTF TRAV1-2*01 TRAJ11*01 CASSDIREGQGEAFF TRBV10-2*01 TRBJ1-1*01 HLA-A*01:01 B2M MHCI CTELKLSDY NP InfluenzaA PMID:34811538 tetramer-sort yes amplicon-seq transitional T cells between effector and memory populations healthy healthy_3 chip0423_639544 PBMC +10246 CAVRLQAGTALIF TRAV20*01 TRAJ15*01 CSATTTRTYEQYF TRBV20-1*01 TRBJ2-7*01 HLA-A*01:01 B2M MHCI CTELKLSDY NP InfluenzaA PMID:34811538 tetramer-sort yes amplicon-seq Naive T cells healthy healthy_3 chip0423_10013 PBMC +10248 CAVSDGEGAQKLVF TRAV8-6*01 TRAJ54*01 CASSLTVLAGPNTETFF TRBV7-3*01 TRBJ1-1*01 HLA-B*08:01 B2M MHCI RAKFKQLL BZLF1 EBV PMID:34811538 tetramer-sort yes amplicon-seq effector memory T cells T1D T1D_4 chip0423_306174 PBMC +10249 CAVSDGEGAQKLVF TRAV8-6*01 TRAJ54*01 HLA-B*08:01 B2M MHCI RAKFKQLL BZLF1 EBV PMID:34811538 tetramer-sort yes amplicon-seq effector memory T cells T1D T1D_4 chip0423_815616 PBMC +10250 CASCRVGSYEQYF TRBV10-3*01 TRBJ2-7*01 HLA-A*01:01 B2M MHCI CTELKLSDY NP InfluenzaA PMID:34811538 tetramer-sort yes amplicon-seq effector T cells healthy healthy_3 chip0423_695053 PBMC +10251 CASSWLGDRYNSPLHF TRBV7-9*01 TRBJ1-6*01 HLA-B*08:01 B2M MHCI RAKFKQLL BZLF1 EBV PMID:34811538 tetramer-sort yes amplicon-seq effector memory T cells healthy healthy_4 chip0423_409485 PBMC +10252 CAMSLSNFGNEKLTF TRAV12-3*01 TRAJ48*01 CASSLGDRDYGYTF TRBV7-2*01 TRBJ1-2*01 HLA-A*02:01 B2M MHCI LLAGIGTVPI PGT HomoSapiens PMID:34811538 tetramer-sort yes amplicon-seq Naive T cells T1D T1D_4 chip0423_601945 PBMC +10253 CAVSGNTGKLIF TRAV20*01 TRAJ37*01 CASSQWDNQPQHF TRBV4-1*01 TRBJ1-5*01 HLA-B*08:01 B2M MHCI WMRLLPLL INS HomoSapiens PMID:34811538 tetramer-sort yes amplicon-seq transitional T cells between effector and memory populations T1D T1D_6 chip0423_271825 PBMC +10254 CAYYHASgg??gcGSVQLVF TRAV38-2/DV8*01 TRAJ57*01 CASSLTVLAGPNTEAFF TRBV7-3*01 TRBJ1-1*01 HLA-B*08:01 B2M MHCI RAKFKQLL BZLF1 EBV PMID:34811538 tetramer-sort yes amplicon-seq effector memory T cells T1D T1D_4 chip0423_550407 PBMC +10255 CALVNYGGSQGNLIF TRAV19*01 TRAJ42*01 CAVWRDGAYEQYF TRBV28*01 TRBJ2-7*01 HLA-A*02:01 B2M MHCI YLLEMLWRL LMP1 EBV PMID:34811538 tetramer-sort yes amplicon-seq transitional T cells between effector and memory populations T1D T1D_4 chip0423_831873 PBMC +10257 CAMSGSNFGNEKLTF TRAV12-3*01 TRAJ48*01 CSAQVDRGPTGELFF TRBV20-1*01 TRBJ2-2*01 HLA-A*02:01 B2M MHCI LLAGIGTVPI PGT HomoSapiens PMID:34811538 tetramer-sort yes amplicon-seq Naive T cells healthy healthy_4 chip0423_607102 PBMC +10258 CASSYSPAYYEQYF TRBV27*01 TRBJ2-7*01 HLA-A*01:01 B2M MHCI LTSLTILQLY G6PC2 HomoSapiens PMID:34811538 tetramer-sort yes amplicon-seq Naive T cells T1D T1D_5 chip0423_551665 PBMC +10259 CAYTPWGPGRPFCF TRAV38-1*01 TRAJ49*01 CASSIDPGLALNTGELFF TRBV19*01 TRBJ2-2*01 HLA-A*02:01 B2M MHCI ALWMRLLPL PREINS HomoSapiens PMID:34811538 tetramer-sort yes amplicon-seq Naive T cells T1D T1D_6 chip0423_550849 PBMC +10260 CASSPLGDSAYEQYF TRBV7-9*01 TRBJ2-7*01 HLA-B*08:01 B2M MHCI RAKFKQLL BZLF1 EBV PMID:34811538 tetramer-sort yes amplicon-seq effector T cells T1D T1D_5 chip0423_554814 PBMC +10261 CASSPSGSGGNNEQFF TRBV12-3*01,TRBV12-4*01 TRBJ2-1*01 HLA-B*08:01 B2M MHCI RAKFKQLL BZLF1 EBV PMID:34811538 tetramer-sort yes amplicon-seq effector memory T cells T1D T1D_5 chip0423_756370 PBMC +10264 CAEMETSYDKVIF TRAV13-2*01 TRAJ50*01 CASTHPQDVNTGELFF TRBV7-9*01 TRBJ2-2*01 HLA-B*08:01 B2M MHCI RAKFKQLL BZLF1 EBV PMID:34811538 tetramer-sort yes amplicon-seq effector T cells T1D T1D_5 chip0423_320380 PBMC +10265 CASSPLGSNEKLFF TRBV7-9*01 TRBJ1-4*01 HLA-B*08:01 B2M MHCI RAKFKQLL BZLF1 EBV PMID:34811538 tetramer-sort yes amplicon-seq effector memory T cells T1D T1D_5 chip0423_753663 PBMC +10266 CAVGHARLMF TRAV12-2*01 TRAJ31*01 HLA-A*02:01 B2M MHCI LLAGIGTVPI PGT HomoSapiens PMID:34811538 tetramer-sort yes amplicon-seq Naive T cells healthy healthy_3 chip0423_721423 PBMC +10268 CALSDTSGNTPLVF TRAV19*01 TRAJ29*01 CASSQMSDTQYF TRBV6-2*01,TRBV6-3*01 TRBJ2-3*01 HLA-A*02:01 B2M MHCI YVLDHLIVV BRLF1 EBV PMID:34811538 tetramer-sort yes amplicon-seq effector memory T cells healthy healthy_3 chip0423_742977 PBMC +10269 CASSSGQAYEQYF TRBV7-8*01 TRBJ2-7*01 HLA-B*08:01 B2M MHCI FLRGRAYGL EBNA3A EBV PMID:34811538 tetramer-sort yes amplicon-seq effector memory T cells healthy healthy_4 chip0423_697656 PBMC +10270 CAASETSYDKVIF TRAV13-1*01 TRAJ50*01 CASSTTRAGTWPLHF TRBV7-9*01 TRBJ1-6*01 HLA-B*08:01 B2M MHCI RAKFKQLL BZLF1 EBV PMID:34811538 tetramer-sort yes amplicon-seq effector memory T cells healthy healthy_4 chip0423_573626 PBMC +10271 CAVEKKNTDKLIF TRAV12-2*01 TRAJ34*01 CASSQGQAYEQYF TRBV7-8*01 TRBJ2-7*01 HLA-B*08:01 B2M MHCI RAKFKQLL BZLF1 EBV PMID:34811538 tetramer-sort yes amplicon-seq effector T cells healthy healthy_4 chip0423_576333 PBMC +10272 CAATLYDKIIF TRAV29/DV5*01 TRAJ30*01 CASSWGQGPTYEQYF TRBV4-1*01 TRBJ2-7*01 HLA-B*08:01 B2M MHCI RAKFKQLL BZLF1 EBV PMID:34811538 tetramer-sort yes amplicon-seq effector T cells healthy healthy_4 chip0423_707306 PBMC +10275 CAVPILCYGGGRGTLIF TRAV25*01 TRAJ42*01 CASSVFSTQPQHF TRBV19*01 TRBJ1-5*01 HLA-A*02:01 B2M MHCI GILGFVFTL M1 InfluenzaA PMID:34811538 tetramer-sort yes amplicon-seq transitional T cells between effector and memory populations T1D T1D_6 chip0423_411904 PBMC +10276 CASSQVDNPGDGYTF TRBV14*01 TRBJ1-2*01 HLA-B*08:01 B2M MHCI QAKWRLQTL EBNA3A EBV PMID:34811538 tetramer-sort yes amplicon-seq effector memory T cells T1D T1D_4 chip0423_93032 PBMC +10277 CAVTGGYNKLIF TRAV12-2*01 TRAJ4*01 CASSPSGAFHDEQYF TRBV27*01 TRBJ2-7*01 HLA-A*02:01 B2M MHCI ALGIGILTV MART1 HomoSapiens PMID:34811538 tetramer-sort yes amplicon-seq Naive T cells T1D T1D_6 chip0423_16586 PBMC +10278 CSAWTSDSYNEQFF TRBV20-1*01 TRBJ2-1*01 HLA-A*02:01 B2M MHCI GILGFVFTL M1 InfluenzaA PMID:34811538 tetramer-sort yes amplicon-seq transitional T cells between effector and memory populations healthy healthy_4 chip0423_792116 PBMC +10279 CALYNNNDMRF TRAV12-1*01 TRAJ43*01 HLA-A*01:01 B2M MHCI LTSLTILQLY G6PC2 HomoSapiens PMID:34811538 tetramer-sort yes amplicon-seq Naive T cells healthy healthy_3 chip0423_418127 PBMC +10280 CAGNYGGSQGNLIF TRAV25*01 TRAJ42*01 HLA-A*02:01 B2M MHCI GILGFVFTL M1 InfluenzaA PMID:34811538 tetramer-sort yes amplicon-seq transitional T cells between effector and memory populations healthy healthy_3 chip0423_259524 PBMC +10281 CATGISNFGNEKLTF TRAV12-3*01 TRAJ48*01 CASSQERASGGDEQYF TRBV14*01 TRBJ2-7*01 HLA-A*02:01 B2M MHCI LLAGIGTVPI PGT HomoSapiens PMID:34811538 tetramer-sort yes amplicon-seq Naive T cells T1D T1D_4 chip0423_334941 PBMC +10282 CAGRSGGGADGLTF TRAV25*01 TRAJ45*01 HLA-A*02:01 B2M MHCI GILGFVFTL M1 InfluenzaA PMID:34811538 tetramer-sort yes amplicon-seq transitional T cells between effector and memory populations healthy healthy_3 chip0423_777315 PBMC +10283 CAAAETSYDKVIF TRAV13-1*01 TRAJ50*01 CASQLAGGTGELFF TRBV24-1*01 TRBJ2-2*01 HLA-B*08:01 B2M MHCI RAKFKQLL BZLF1 EBV PMID:34811538 tetramer-sort yes amplicon-seq effector memory T cells T1D T1D_5 chip0423_274223 PBMC +10284 CSVTGPRSYAQYC TRBV20-1*01 TRBJ2-7*01 HLA-A*02:01 B2M MHCI VLFGLGFAI IGRP HomoSapiens PMID:34811538 tetramer-sort yes amplicon-seq Naive T cells T1D T1D_6 chip0423_808470 PBMC +10285 CASSLYSNEQFF TRBV28*01 TRBJ2-1*01 HLA-A*02:01 B2M MHCI YVLDHLIVV BRLF1 EBV PMID:34811538 tetramer-sort yes amplicon-seq effector T cells healthy healthy_3 chip0423_490977 PBMC +10286 CAMSASNFGNEKLTF TRAV12-3*01 TRAJ48*01 HLA-A*02:01 B2M MHCI LLAGIGTVPI PGT HomoSapiens PMID:34811538 tetramer-sort yes amplicon-seq Naive T cells T1D T1D_6 chip0423_371694 PBMC +10288 CASSLMAGGTDTQYF TRBV27*01 TRBJ2-3*01 HLA-A*02:01 B2M MHCI YLQQNWWTL LMP1 EBV PMID:34811538 tetramer-sort yes amplicon-seq central memory T cells T1D T1D_4 chip0423_573086 PBMC +10289 CVVNGENARLMF TRAV12-1*01 TRAJ31*01 CASSEMWGAPLHF TRBV2*01 TRBJ1-6*01 HLA-A*01:01 B2M MHCI CTELKLSDY NP InfluenzaA PMID:34811538 tetramer-sort yes amplicon-seq transitional T cells between effector and memory populations healthy healthy_3 chip0423_374675 PBMC +10290 CAMSLSNFGNEKLTF TRAV12-3*01 TRAJ48*01 CSARLAGGRQMMDTQYF TRBV20-1*01 TRBJ2-3*01 HLA-A*02:01 B2M MHCI LLAGIGTVPI PGT HomoSapiens PMID:34811538 tetramer-sort yes amplicon-seq Naive T cells healthy healthy_3 chip0423_430026 PBMC +10291 CAASETSYDKVIF TRAV13-1*01 TRAJ50*01 HLA-B*08:01 B2M MHCI RAKFKQLL BZLF1 EBV PMID:34811538 tetramer-sort yes amplicon-seq effector memory T cells T1D T1D_5 chip0423_155239 PBMC +10292 CASSLAVGEGPQHF TRBV7-9*01 TRBJ1-5*01 HLA-B*08:01 B2M MHCI RAKFKQLL BZLF1 EBV PMID:34811538 tetramer-sort yes amplicon-seq effector T cells T1D T1D_4 chip0423_94852 PBMC +10293 CSARAPNTGELFF TRBV29-1*01 TRBJ2-2*01 HLA-A*02:01 B2M MHCI NLFLFLFAV IGRP HomoSapiens PMID:34811538 tetramer-sort yes amplicon-seq transitional T cells between effector and memory populations healthy healthy_3 chip0423_380544 PBMC +10295 CASSQVNNPGDGYTF TRBV14*01 TRBJ1-2*01 HLA-B*08:01 B2M MHCI QAKWRLQTL EBNA3A EBV PMID:34811538 tetramer-sort yes amplicon-seq effector memory T cells T1D T1D_4 chip0423_77409 PBMC +10296 CAVKEGGKLIF TRAV8-1*01 TRAJ23*01 HLA-A*02:01 B2M MHCI YVLDHLIVV BRLF1 EBV PMID:34811538 tetramer-sort yes amplicon-seq effector memory T cells healthy healthy_3 chip0423_803391 PBMC +10298 CAPASGGSYIPTF TRAV24*01 TRAJ6*01 CASCRDGTYEQYF TRBV10-3*01 TRBJ2-7*01 HLA-A*01:01 B2M MHCI CTELKLSDY NP InfluenzaA PMID:34811538 tetramer-sort yes amplicon-seq transitional T cells between effector and memory populations healthy healthy_3 chip0423_715248 PBMC +10299 CASSLVVSSSYNEQFF TRBV7-9*01 TRBJ2-1*01 HLA-A*01:01 B2M MHCI PTHEEHLFY G6PC2 HomoSapiens PMID:34811538 tetramer-sort yes amplicon-seq Naive T cells T1D T1D_5 chip0423_418267 PBMC +10301 CRASRSGQGIQNTIYF TRBV20-1*01 TRBJ1-3*01 HLA-B*08:01 B2M MHCI RAKFKQLL BZLF1 EBV PMID:34811538 tetramer-sort yes amplicon-seq effector memory T cells T1D T1D_5 chip0423_317961 PBMC +10302 CALAAIVLRF TRAV16*01 TRAJ43*01 HLA-A*02:01 B2M MHCI LLAGIGTVPI PGT HomoSapiens PMID:34811538 tetramer-sort yes amplicon-seq Naive T cells healthy healthy_4 chip0423_857909 PBMC +10303 CAAAETSYDKVIF TRAV13-1*01 TRAJ50*01 CASQLAGGTGELSF TRBV24-1*01 TRBJ2-2*01 HLA-B*08:01 B2M MHCI RAKFKQLL BZLF1 EBV PMID:34811538 tetramer-sort yes amplicon-seq effector T cells T1D T1D_5 chip0423_390707 PBMC +10304 CAASETSYDKVIF TRAV13-1*01 TRAJ50*01 HLA-B*08:01 B2M MHCI RAKFKQLL BZLF1 EBV PMID:34811538 tetramer-sort yes amplicon-seq effector memory T cells healthy healthy_4 chip0423_727665 PBMC +10305 CAVLPSNDYKLSF TRAV21*01 TRAJ20*01 CASIGKTTSTDTRYF TRBV19*01 TRBJ2-3*01 HLA-A*01:01 B2M MHCI CTELKLSDY NP InfluenzaA PMID:34811538 tetramer-sort yes amplicon-seq transitional T cells between effector and memory populations healthy healthy_3 chip0423_233565 PBMC +10307 CAVKDTDKLIF TRAV8-1*01 TRAJ34*01 HLA-A*02:01 B2M MHCI YVLDHLIVV BRLF1 EBV PMID:34811538 tetramer-sort yes amplicon-seq effector memory T cells healthy healthy_3 chip0423_198732 PBMC +10309 CASSLGQAYEQYF TRBV7-8*01 TRBJ2-7*01 HLA-B*08:01 B2M MHCI FLRGRAYGL EBNA3A EBV PMID:34811538 tetramer-sort yes amplicon-seq effector memory T cells T1D T1D_6 chip0423_565959 PBMC +10310 CAVSDTTWVDKIIF TRAV3*01 TRAJ30*01 CASSLGGGEGASEQFF TRBV7-6*01 TRBJ2-1*01 HLA-B*08:01 B2M MHCI FLRGRAYGL EBNA3A EBV PMID:34811538 tetramer-sort yes amplicon-seq effector memory T cells T1D T1D_4 chip0423_465776 PBMC +10311 CVAIASGGSYIPTF TRAV12-1*01 TRAJ6*01 CASSQDSTPLHF TRBV4-2*01 TRBJ1-6*01 HLA-A*02:01 B2M MHCI YLQQNWWTL LMP1 EBV PMID:34811538 tetramer-sort yes amplicon-seq central memory T cells healthy healthy_3 chip0423_158193 PBMC +10312 CAESREISGGGADGLPF TRAV5*01 TRAJ45*01 CASSSWTg?gNYRGAVF TRBV28*01 TRBJ2-2*01 HLA-A*02:01 B2M MHCI VMNILLQYV GAD65 HomoSapiens PMID:34811538 tetramer-sort yes amplicon-seq Naive T cells T1D T1D_6 chip0423_396625 PBMC +10313 CATPTGANNLFF TRAV35*01 TRAJ36*01 CASSLLGSVDTEAFF TRBV7-9*01 TRBJ1-1*01 HLA-B*08:01 B2M MHCI RAKFKQLL BZLF1 EBV PMID:34811538 tetramer-sort yes amplicon-seq effector T cells T1D T1D_5 chip0423_650261 PBMC +10314 CASGGSYIPTF TRAV12-1*01 TRAJ6*01 CASSEQGSTYEQYF TRBV7-2*01 TRBJ2-7*01 HLA-A*02:01 B2M MHCI LLAGIGTVPI PGT HomoSapiens PMID:34811538 tetramer-sort yes amplicon-seq Naive T cells healthy healthy_3 chip0423_220386 PBMC +10317 CAYREYGNKLVF TRAV38-1*01 TRAJ47*01 CASSQTFPNTGELFF TRBV3-1*01 TRBJ2-2*01 HLA-B*08:01 B2M MHCI RAKFKQLL BZLF1 EBV PMID:34811538 tetramer-sort yes amplicon-seq effector memory T cells healthy healthy_4 chip0423_274026 PBMC +10318 CASSMMTGDSYNSPLHF TRBV19*01 TRBJ1-6*01 HLA-A*01:01 B2M MHCI CTELKLSDY NP InfluenzaA PMID:34811538 tetramer-sort yes amplicon-seq transitional T cells between effector and memory populations T1D T1D_5 chip0423_15632 PBMC +10320 CASSLDGTGYYEQYF TRBV7-2*01 TRBJ2-7*01 HLA-A*01:01 B2M MHCI LVSDGGPNLY PB1 InfluenzaA PMID:34811538 tetramer-sort yes amplicon-seq central memory T cells healthy healthy_3 chip0423_797227 PBMC +10321 CASSGLAGAINTGELFF TRBV5-6*01 TRBJ2-2*01 HLA-A*02:01 B2M MHCI ALGIGILTV MART1 HomoSapiens PMID:34811538 tetramer-sort yes amplicon-seq Naive T cells healthy healthy_3 chip0423_572740 PBMC +10322 CASSFRDSNYEQYF TRBV19*01 TRBJ2-7*01 HLA-B*08:01 B2M MHCI QAKWRLQTL EBNA3A EBV PMID:34811538 tetramer-sort yes amplicon-seq Naive T cells T1D T1D_5 chip0423_289860 PBMC +10324 CASSLGGGEGASEQFF TRBV7-6*01 TRBJ2-1*01 HLA-B*08:01 B2M MHCI FLRGRAYGL EBNA3A EBV PMID:34811538 tetramer-sort yes amplicon-seq effector memory T cells T1D T1D_4 chip0423_824845 PBMC +10325 CAMSASNFGNEKLTF TRAV12-3*01 TRAJ48*01 HLA-A*02:01 B2M MHCI LLAGIGTVPI PGT HomoSapiens PMID:34811538 tetramer-sort yes amplicon-seq Naive T cells T1D T1D_4 chip0423_358153 PBMC +10326 CASSEMWGAPLHF TRBV2*01 TRBJ1-6*01 HLA-A*01:01 B2M MHCI CTELKLSDY NP InfluenzaA PMID:34811538 tetramer-sort yes amplicon-seq effector memory T cells healthy healthy_3 chip0423_97688 PBMC +10327 CASSLGTSSTDTQYF TRBV7-9*01 TRBJ2-3*01 HLA-A*02:01 B2M MHCI FLWSVFMLI IGRP HomoSapiens PMID:34811538 tetramer-sort yes amplicon-seq Naive T cells T1D T1D_6 chip0423_478181 PBMC +10329 CAVNMGAGQSTF TRAV12-2*01 TRAJ27*01 CASSLSNEAFF TRBV7-9*01 TRBJ1-1*01 HLA-A*02:01 B2M MHCI LVGPTPVNI POL HIV-1 PMID:34811538 tetramer-sort yes amplicon-seq Naive T cells T1D T1D_4 chip0423_76386 PBMC +10334 CAVTSNTGKLIF TRAV12-1*01 TRAJ37*01 HLA-A*01:01 B2M MHCI ALDIEIATY GFAP HomoSapiens PMID:34811538 tetramer-sort yes amplicon-seq Naive T cells T1D T1D_6 chip0423_778317 PBMC +10335 CAASAEARLMF TRAV29/DV5*01 TRAJ31*01 CASRVGREPTGELFF TRBV3-1*01 TRBJ2-2*01 HLA-B*08:01 B2M MHCI RAKFKQLL BZLF1 EBV PMID:34811538 tetramer-sort yes amplicon-seq effector memory T cells healthy healthy_4 chip0423_668900 PBMC +10336 CASSYPRSNTGELFF TRBV6-2*01,TRBV6-3*01 TRBJ2-2*01 HLA-A*02:01 B2M MHCI LLSILCIWV ZNT8 HomoSapiens PMID:34811538 tetramer-sort yes amplicon-seq Naive T cells T1D T1D_6 chip0423_448523 PBMC +10337 CAVRRHQAGTALIF TRAV3*01 TRAJ15*01 HLA-A*01:01 B2M MHCI CTELKLSDY NP InfluenzaA PMID:34811538 tetramer-sort yes amplicon-seq transitional T cells between effector and memory populations healthy healthy_3 chip0423_361804 PBMC +10339 SIL*Ptc??gtNPFSF TRAV26-2*01 TRAJ49*01 HLA-A*02:01 B2M MHCI LLAGIGTVPI PGT HomoSapiens PMID:34811538 tetramer-sort yes amplicon-seq Naive T cells T1D T1D_4 chip0423_263071 PBMC +10340 CASSHAPSGEFKNIQYF TRBV4-2*01 TRBJ2-4*01 HLA-A*02:01 B2M MHCI YVLDHLIVV BRLF1 EBV PMID:34811538 tetramer-sort yes amplicon-seq Naive T cells T1D T1D_6 chip0423_11551 PBMC +10341 CASQGGSQGNLIF TRAV20*01 TRAJ42*01 HLA-A*02:01 B2M MHCI TLLANVTAV VP6 RotavirusA PMID:34811538 tetramer-sort yes amplicon-seq transitional T cells between effector and memory populations T1D T1D_6 chip0423_421517 PBMC +10342 CASSLELGLPYEQYF TRBV5-1*01 TRBJ2-7*01 HLA-B*08:01 B2M MHCI QAKWRLQTL EBNA3A EBV PMID:34811538 tetramer-sort yes amplicon-seq effector memory T cells T1D T1D_4 chip0423_806347 PBMC +10343 CASNHTQDIPNYGYTF TRBV12-3*01,TRBV12-4*01 TRBJ1-2*01 HLA-B*08:01 B2M MHCI RAKFKQLL BZLF1 EBV PMID:34811538 tetramer-sort yes amplicon-seq effector T cells T1D T1D_5 chip0423_549781 PBMC +10344 CASTGTSDSTDTQYF TRBV2*01 TRBJ2-3*01 HLA-A*01:01 B2M MHCI CTELKLSDY NP InfluenzaA PMID:34811538 tetramer-sort yes amplicon-seq transitional T cells between effector and memory populations healthy healthy_3 chip0423_314539 PBMC +10345 CIPPLAGGTSYGKLTF TRAV26-2*01 TRAJ52*01 CASSSGQAYEQYF TRBV7-8*01 TRBJ2-7*01 HLA-B*08:01 B2M MHCI FLRGRAYGL EBNA3A EBV PMID:34811538 tetramer-sort yes amplicon-seq effector T cells healthy healthy_4 chip0423_10003 PBMC +10346 CAMSEGNt?tWNEKLTF TRAV12-3*01 TRAJ48*01 HLA-A*02:01 B2M MHCI LLAGIGTVPI PGT HomoSapiens PMID:34811538 tetramer-sort yes amplicon-seq Naive T cells healthy healthy_3 chip0423_690129 PBMC +10347 CTMSGSNFGNEKLTF TRAV12-3*01 TRAJ48*01 CASSQDLGTPATNEKLFF TRBV14*01 TRBJ1-4*01 HLA-A*02:01 B2M MHCI LLAGIGTVPI PGT HomoSapiens PMID:34811538 tetramer-sort yes amplicon-seq Naive T cells T1D T1D_4 chip0423_321383 PBMC +10348 SLLPLAGVPPYGPLTF TRAV26-2*01 TRAJ52*01 CASSSEQAYEQYF TRBV7-8*01 TRBJ2-7*01 HLA-B*08:01 B2M MHCI FLRGRAYGL EBNA3A EBV PMID:34811538 tetramer-sort yes amplicon-seq effector memory T cells healthy healthy_4 chip0423_605636 PBMC +10349 CAVNSGNTPLVF TRAV1-2*01 TRAJ29*01 CASSQVNNPGDGYTF TRBV14*01 TRBJ1-2*01 HLA-B*08:01 B2M MHCI QAKWRLQTL EBNA3A EBV PMID:34811538 tetramer-sort yes amplicon-seq effector memory T cells T1D T1D_4 chip0423_671900 PBMC +10350 CIVRETDTDMRF TRAV26-1*01 TRAJ43*01 CASSQTGSLNTEAFF TRBV4-1*01 TRBJ1-1*01 HLA-B*08:01 B2M MHCI RAKFKQLL BZLF1 EBV PMID:34811538 tetramer-sort yes amplicon-seq effector memory T cells healthy healthy_4 chip0423_463558 PBMC +10352 CASSLGGQAETQYF TRBV13*01 TRBJ2-5*01 HLA-A*02:01 B2M MHCI TLLANVTAV VP6 RotavirusA PMID:34811538 tetramer-sort yes amplicon-seq transitional T cells between effector and memory populations T1D T1D_6 chip0423_374175 PBMC +10353 CAMSLSNFGNEKLTF TRAV12-3*01 TRAJ48*01 CASSLDSEEAFF TRBV28*01 TRBJ1-1*01 HLA-A*02:01 B2M MHCI LLAGIGTVPI PGT HomoSapiens PMID:34811538 tetramer-sort yes amplicon-seq Naive T cells T1D T1D_6 chip0423_202290 PBMC +10354 CAARLGYGNKLAF TRAV13-1*01 TRAJ47*01 HLA-A*01:01 B2M MHCI CTELKLSDY NP InfluenzaA PMID:34811538 tetramer-sort yes amplicon-seq effector memory T cells healthy healthy_3 chip0423_187512 PBMC +10355 CAVKEGGKLIF TRAV8-1*01 TRAJ23*01 CASSQMSDTQYF TRBV6-2*01,TRBV6-3*01 TRBJ2-3*01 HLA-A*02:01 B2M MHCI YVLDHLIVV BRLF1 EBV PMID:34811538 tetramer-sort yes amplicon-seq effector memory T cells healthy healthy_3 chip0423_30902 PBMC +10357 CAAQETSYDKVIF TRAV13-1*01 TRAJ50*01 CSVGGNTEAFF TRBV29-1*01 TRBJ1-1*01 HLA-B*08:01 B2M MHCI RAKFKQLL BZLF1 EBV PMID:34811538 tetramer-sort yes amplicon-seq effector T cells T1D T1D_5 chip0423_407738 PBMC +10358 CASSLGREIGPIEQFF TRBV7-8*01 TRBJ2-1*01 HLA-B*08:01 B2M MHCI RAKFKQLL BZLF1 EBV PMID:34811538 tetramer-sort yes amplicon-seq effector memory T cells T1D T1D_5 chip0423_324944 PBMC +10361 CASRSPGTGNYGYTF TRBV2*01 TRBJ1-2*01 HLA-B*08:01 B2M MHCI RAKFKQLL BZLF1 EBV PMID:34811538 tetramer-sort yes amplicon-seq effector memory T cells T1D T1D_5 chip0423_447735 PBMC +10362 CIVRAGGGAGGLPF TRAV26-1*01 TRAJ45*01 HLA-B*08:01 B2M MHCI RAKFKQLL BZLF1 EBV PMID:34811538 tetramer-sort yes amplicon-seq effector T cells T1D T1D_4 chip0423_639162 PBMC +10363 CLVGDIag??gaAYKSIF TRAV4*01 TRAJ40*01 CASSTSRGSGNTIYF TRBV4-1*01 TRBJ1-3*01 HLA-B*08:01 B2M MHCI RAKFKQLL BZLF1 EBV PMID:34811538 tetramer-sort yes amplicon-seq effector memory T cells T1D T1D_4 chip0423_25278 PBMC +10364 CASRLAGAAYNEQFF TRBV6-1*01 TRBJ2-1*01 HLA-A*02:01 B2M MHCI AAGIGILTV MART1 HomoSapiens PMID:34811538 tetramer-sort yes amplicon-seq Naive T cells T1D T1D_6 chip0423_160047 PBMC +10365 CASSLAVGEGPQHF TRBV7-9*01 TRBJ1-5*01 HLA-B*08:01 B2M MHCI RAKFKQLL BZLF1 EBV PMID:34811538 tetramer-sort yes amplicon-seq effector T cells T1D T1D_4 chip0423_742077 PBMC +10366 CASSLGQAYEQYF TRBV7-8*01 TRBJ2-7*01 HLA-B*08:01 B2M MHCI FLRGRAYGL EBNA3A EBV PMID:34811538 tetramer-sort yes amplicon-seq effector memory T cells T1D T1D_6 chip0423_154326 PBMC +10367 CASSQLPGTTYEQYF TRBV3-1*01 TRBJ2-7*01 HLA-A*02:01 B2M MHCI YLQQNWWTL LMP1 EBV PMID:34811538 tetramer-sort yes amplicon-seq Naive T cells healthy healthy_4 chip0423_693302 PBMC +10369 CIVRVVCac?GTASNLTF TRAV26-1*01 TRAJ44*01 CASSLAVGEGPQHF TRBV7-9*01 TRBJ1-5*01 HLA-B*08:01 B2M MHCI RAKFKQLL BZLF1 EBV PMID:34811538 tetramer-sort yes amplicon-seq effector memory T cells T1D T1D_4 chip0423_788620 PBMC +10370 CAMSGSNFGHEKLTF TRAV12-3*01 TRAJ48*01 CASGGEGDDVSSGNTIYF TRBV12-3*01,TRBV12-4*01 TRBJ1-3*01 HLA-A*02:01 B2M MHCI LLAGIGTVPI PGT HomoSapiens PMID:34811538 tetramer-sort yes amplicon-seq Naive T cells T1D T1D_4 chip0423_629782 PBMC +10371 CASSGTPFSYEQYF TRBV6-1*01 TRBJ2-7*01 HLA-A*02:01 B2M MHCI VMNILLQYV GAD65 HomoSapiens PMID:34811538 tetramer-sort yes amplicon-seq effector T cells healthy healthy_3 chip0423_571007 PBMC +10372 RASRALLGSGNTIYF TRBV19*01 TRBJ1-3*01 HLA-A*02:01 B2M MHCI YVLDHLIVV BRLF1 EBV PMID:34811538 tetramer-sort yes amplicon-seq effector T cells healthy healthy_4 chip0423_601266 PBMC +10373 CASSTGYYGYTF TRBV19*01 TRBJ1-2*01 HLA-A*02:01 B2M MHCI GILGFVFTL M1 InfluenzaA PMID:34811538 tetramer-sort yes amplicon-seq transitional T cells between effector and memory populations T1D T1D_4 chip0423_591791 PBMC +10374 CASSPLGGAVEAFF TRBV19*01 TRBJ1-1*01 HLA-A*01:01 B2M MHCI STNVGSNTY IAPP HomoSapiens PMID:34811538 tetramer-sort yes amplicon-seq Naive T cells T1D T1D_4 chip0423_457629 PBMC +10375 CASSTPGYTYEQYF TRBV11-2*01 TRBJ2-7*01 HLA-A*02:01 B2M MHCI GILGFVFTL M1 InfluenzaA PMID:34811538 tetramer-sort yes amplicon-seq transitional T cells between effector and memory populations healthy healthy_3 chip0423_204389 PBMC +10376 CASSLGQAYEQYF TRBV7-8*01 TRBJ2-7*01 HLA-B*08:01 B2M MHCI FLRGRAYGL EBNA3A EBV PMID:34811538 tetramer-sort yes amplicon-seq effector memory T cells T1D T1D_6 chip0423_187465 PBMC +10377 CAVPYSGGGADGLTF TRAV41*01 TRAJ45*01 CASRWWSNQPQHF TRBV2*01 TRBJ1-5*01 HLA-B*08:01 B2M MHCI YLKDQQLL gp160 HIV-1 PMID:34811538 tetramer-sort yes amplicon-seq Naive T cells healthy healthy_4 chip0423_785846 PBMC +10378 CALLGGSYIPTF TRAV12-2*01 TRAJ6*01 CASTKTGGGYEQYF TRBV6-1*01 TRBJ2-7*01 HLA-A*01:01 B2M MHCI LTSLTILQLY G6PC2 HomoSapiens PMID:34811538 tetramer-sort yes amplicon-seq Naive T cells T1D T1D_6 chip0423_646229 PBMC +10379 CAWSGTR??gEEEKLFF TRBV30*01 TRBJ1-4*01 HLA-B*08:01 B2M MHCI RAKFKQLL BZLF1 EBV PMID:34811538 tetramer-sort yes amplicon-seq effector memory T cells T1D T1D_5 chip0423_315536 PBMC +10380 RAALETSYDKVIF TRAV13-1*01 TRAJ50*01 CASSPDGSTGELFF TRBV12-3*01,TRBV12-4*01 TRBJ2-2*01 HLA-B*08:01 B2M MHCI RAKFKQLL BZLF1 EBV PMID:34811538 tetramer-sort yes amplicon-seq effector memory T cells T1D T1D_5 chip0423_422327 PBMC +10381 CASSQDQITEGGNYGYTF TRBV3-1*01 TRBJ1-2*01 HLA-A*02:01 B2M MHCI VLFGLGFAI IGRP HomoSapiens PMID:34811538 tetramer-sort yes amplicon-seq effector memory T cells healthy healthy_3 chip0423_237823 PBMC +10382 CATSDSWGKLQF TRAV12-2*01 TRAJ24*01 CASSQDLRGEQYF TRBV4-2*01 TRBJ2-7*01 HLA-B*08:01 B2M MHCI CPLSKILL LMP2A EBV PMID:34811538 tetramer-sort yes amplicon-seq effector memory T cells healthy healthy_5 chip0423_714462 PBMC +10383 CASSFKGDITDTQYF TRBV28*01 TRBJ2-3*01 HLA-A*02:01 B2M MHCI RLLPLLALLAL INS HomoSapiens PMID:34811538 tetramer-sort yes amplicon-seq Naive T cells healthy healthy_3 chip0423_611910 PBMC +10384 CAARTSYDKVIF TRAV13-1*01 TRAJ50*01 CASSPGTSPLHF TRBV4-2*01 TRBJ1-6*01 HLA-A*02:01 B2M MHCI NLAQDLATV GFAP HomoSapiens PMID:34811538 tetramer-sort yes amplicon-seq central memory T cells T1D T1D_4 chip0423_1983 PBMC +10385 CASSLITYEQYF TRBV7-9*01 TRBJ2-7*01 HLA-B*08:01 B2M MHCI RAKFKQLL BZLF1 EBV PMID:34811538 tetramer-sort yes amplicon-seq effector memory T cells healthy healthy_4 chip0423_675509 PBMC +10386 CASSALRTQGLQETQYF TRBV28*01 TRBJ2-5*01 HLA-A*02:01 B2M MHCI LLAGIGTVPI PGT HomoSapiens PMID:34811538 tetramer-sort yes amplicon-seq Naive T cells healthy healthy_3 chip0423_248358 PBMC +10387 CAMANSGGSNYKLTF TRAV12-3*01 TRAJ53*01 CSVGSGDYEQYF TRBV29-1*01 TRBJ2-7*01 HLA-B*08:01 B2M MHCI RAKFKQLL BZLF1 EBV PMID:34811538 tetramer-sort yes amplicon-seq effector memory T cells healthy healthy_4 chip0423_247929 PBMC +10388 CASSQDGTGINTEAFF TRBV4-1*01 TRBJ1-1*01 HLA-A*01:01 B2M MHCI CTELKLSDY NP InfluenzaA PMID:34811538 tetramer-sort yes amplicon-seq effector T cells T1D T1D_5 chip0423_247598 PBMC +10389 CAMREGEGQGFSFIF TRAV14/DV4*01 TRAJ11*01 HLA-B*08:01 B2M MHCI RAKFKQLL BZLF1 EBV PMID:34811538 tetramer-sort yes amplicon-seq effector memory T cells T1D T1D_5 chip0423_336809 PBMC +10390 CASSYEERGASSYNEQFF TRBV6-2*01,TRBV6-3*01 TRBJ2-1*01 HLA-A*02:01 B2M MHCI LLAGIGTVPI PGT HomoSapiens PMID:34811538 tetramer-sort yes amplicon-seq Naive T cells healthy healthy_3 chip0423_308847 PBMC +10391 RASSSSASKILF TRAV9-2*01 TRAJ3*01 CASSGPHANYGYTF TRBV9*01 TRBJ1-2*01 HLA-A*01:01 B2M MHCI CTELKLSDY NP InfluenzaA PMID:34811538 tetramer-sort yes amplicon-seq effector memory T cells healthy healthy_3 chip0423_263585 PBMC +10392 CAVEKKNTDKLIF TRAV12-2*01,TRAV21*01 TRAJ34*01 HLA-B*08:01 B2M MHCI RAKFKQLL BZLF1 EBV PMID:34811538 tetramer-sort yes amplicon-seq transitional T cells between effector and memory populations healthy healthy_4 chip0423_518420 PBMC +10393 CAAKETSYDKVIF TRAV13-1*01 TRAJ50*01 CASSSLGTGEPVKTEAFF TRBV11-1*01 TRBJ1-1*01 HLA-B*08:01 B2M MHCI RAKFKQLL BZLF1 EBV PMID:34811538 tetramer-sort yes amplicon-seq effector memory T cells T1D T1D_5 chip0423_803017 PBMC +10394 CSVGSGEGYEQYF TRBV29-1*01 TRBJ2-7*01 HLA-B*08:01 B2M MHCI RAKFKQLL BZLF1 EBV PMID:34811538 tetramer-sort yes amplicon-seq effector memory T cells healthy healthy_4 chip0423_738333 PBMC +10395 CIVREGGGADGLPF TRAV26-1*01 TRAJ45*01 CASSLAVGEGPQHF TRBV7-9*01 TRBJ1-5*01 HLA-B*08:01 B2M MHCI RAKFKQLL BZLF1 EBV PMID:34811538 tetramer-sort yes amplicon-seq effector memory T cells T1D T1D_4 chip0423_703908 PBMC +10396 CILIRTg?aSNKLVF TRAV26-2*01 TRAJ57*01 CASSQVLGLATEQFF TRBV4-3*01 TRBJ2-1*01 HLA-A*02:01 B2M MHCI LLAGIGTVPI PGT HomoSapiens PMID:34811538 tetramer-sort yes amplicon-seq Naive T cells T1D T1D_4 chip0423_526178 PBMC +10397 CAVKEGGKLIF TRAV8-1*01 TRAJ23*01 HLA-A*02:01 B2M MHCI YVLDHLIVV BRLF1 EBV PMID:34811538 tetramer-sort yes amplicon-seq effector memory T cells healthy healthy_3 chip0423_762991 PBMC +10398 CILPLAGGTSYGKLTF TRAV26-2*01 TRAJ52*01 CASSQDPRTQGVQPQHF TRBV6-2*01,TRBV6-3*01 TRBJ1-5*01 HLA-B*08:01 B2M MHCI FLRGRAYGL EBNA3A EBV PMID:34811538 tetramer-sort yes amplicon-seq effector T cells T1D T1D_6 chip0423_683413 PBMC +10399 CASSVGREIGPIEQFF TRBV7-8*01 TRBJ2-1*01 HLA-B*08:01 B2M MHCI RAKFKQLL BZLF1 EBV PMID:34811538 tetramer-sort yes amplicon-seq effector T cells T1D T1D_5 chip0423_602505 PBMC +10400 CAVRDGEGAQQLVF TRAV8-6*01 TRAJ54*01 CASSLTVLAGPNTEAFF TRBV7-3*01 TRBJ1-1*01 HLA-B*08:01 B2M MHCI RAKFKQLL BZLF1 EBV PMID:34811538 tetramer-sort yes amplicon-seq effector memory T cells T1D T1D_4 chip0423_92958 PBMC +10401 CASSHELAVYEQYF TRBV6-2*01,TRBV6-3*01 TRBJ2-7*01 HLA-A*02:01 B2M MHCI QLARQQVHV GFAP HomoSapiens PMID:34811538 tetramer-sort yes amplicon-seq central memory T cells healthy healthy_4 chip0423_575293 PBMC +10402 CPPARALg?cPPGTLIF TRAV8-6*01 TRAJ37*01 CAWSHGTGREAFF TRBV30*01 TRBJ1-1*01 HLA-A*02:01 B2M MHCI GIIYIIYKL P3A CoxsackievirusB PMID:34811538 tetramer-sort yes amplicon-seq Naive T cells healthy healthy_3 chip0423_6928 PBMC +10403 CASSLAVGEGPQHF TRBV7-9*01 TRBJ1-5*01 HLA-B*08:01 B2M MHCI RAKFKQLL BZLF1 EBV PMID:34811538 tetramer-sort yes amplicon-seq effector T cells T1D T1D_4 chip0423_809717 PBMC +10404 CASSPKTGAGLAGDEQFF TRBV11-1*01 TRBJ2-1*01 HLA-A*01:01 B2M MHCI CTELKLSDY NP InfluenzaA PMID:34811538 tetramer-sort yes amplicon-seq transitional T cells between effector and memory populations healthy healthy_3 chip0423_710245 PBMC +10405 CAMTRPNFGSGDFPF TRAV12-3*01 TRAJ48*01 HLA-A*02:01 B2M MHCI LLAGIGTVPI PGT HomoSapiens PMID:34811538 tetramer-sort yes amplicon-seq Naive T cells T1D T1D_6 chip0423_402408 PBMC +10406 CAMREESGYSTLTF TRAV14/DV4*01 TRAJ11*01 CSARDRGSENTGELFF TRBV20-1*01 TRBJ2-2*01 HLA-B*08:01 B2M MHCI RAKFKQLL BZLF1 EBV PMID:34811538 tetramer-sort yes amplicon-seq effector memory T cells healthy healthy_4 chip0423_627816 PBMC +10407 CASSFTGSSGNTIYF TRBV12-3*01,TRBV12-4*01 TRBJ1-3*01 HLA-B*08:01 B2M MHCI RAKFKQLL BZLF1 EBV PMID:34811538 tetramer-sort yes amplicon-seq effector T cells T1D T1D_5 chip0423_551384 PBMC +10408 CASGLVRYSTTRETGELFF TRBV12-5*01 TRBJ2-2*01 HLA-B*08:01 B2M MHCI CPLSKILL LMP2A EBV PMID:34811538 tetramer-sort yes amplicon-seq Naive T cells T1D T1D_6 chip0423_636281 PBMC +10409 CAVAPPPPATLIF TRAV21*01 TRAJ34*01 HLA-B*08:01 B2M MHCI RAKFKQLL BZLF1 EBV PMID:34811538 tetramer-sort yes amplicon-seq effector T cells healthy healthy_4 chip0423_278871 PBMC +10410 CASSLGQAYEQYF TRBV7-8*01 TRBJ2-7*01 HLA-B*08:01 B2M MHCI FLRGRAYGL EBNA3A EBV PMID:34811538 tetramer-sort yes amplicon-seq effector T cells T1D T1D_6 chip0423_327488 PBMC +10411 CIVIVAa?gGGTLIF TRAV26-1*01 TRAJ23*01 CASSDLRQTSSYNEQFF TRBV19*01 TRBJ2-1*01 HLA-A*01:01 B2M MHCI CTELKLSDY NP InfluenzaA PMID:34811538 tetramer-sort yes amplicon-seq transitional T cells between effector and memory populations healthy healthy_3 chip0423_298509 PBMC +10412 CASSLNVGEGAGNTIYF TRBV7-6*01 TRBJ1-3*01 HLA-B*08:01 B2M MHCI RAKFKQLL BZLF1 EBV PMID:34811538 tetramer-sort yes amplicon-seq effector memory T cells healthy healthy_4 chip0423_274822 PBMC +10413 CALMETSYDKVVF TRAV9-2*01 TRAJ50*01 CASIAGREEAFF TRBV19*01 TRBJ1-1*01 HLA-B*08:01 B2M MHCI RAKFKQLL BZLF1 EBV PMID:34811538 tetramer-sort yes amplicon-seq transitional T cells between effector and memory populations T1D T1D_4 chip0423_192425 PBMC +10414 CAASETSYDKVIF TRAV13-1*01 TRAJ50*01 HLA-B*08:01 B2M MHCI RAKFKQLL BZLF1 EBV PMID:34811538 tetramer-sort yes amplicon-seq effector memory T cells T1D T1D_5 chip0423_436803 PBMC +10416 CAVEDQGRSYNTDKLIF TRAV2*01 TRAJ34*01 CASSLNVGEGAGNTIYF TRBV7-6*01 TRBJ1-3*01 HLA-B*08:01 B2M MHCI RAKFKQLL BZLF1 EBV PMID:34811538 tetramer-sort yes amplicon-seq effector memory T cells healthy healthy_4 chip0423_303535 PBMC +10417 CAALETSYDKVIF TRAV13-1*01 TRAJ50*01 CASSLPTSGGYLSYEQYF TRBV7-8*01 TRBJ2-7*01 HLA-A*02:01 B2M MHCI CLGGLLTMV LMP2A EBV PMID:34811538 tetramer-sort yes amplicon-seq Naive T cells T1D T1D_6 chip0423_400603 PBMC +10418 CASSQAPGQRTGELFF TRBV4-1*01 TRBJ2-2*01 HLA-B*08:01 B2M MHCI RAKFKQLL BZLF1 EBV PMID:34811538 tetramer-sort yes amplicon-seq effector memory T cells healthy healthy_4 chip0423_687558 PBMC +10420 CSVGDRASYGYTF TRBV20-1*01 TRBJ1-2*01 HLA-A*01:01 B2M MHCI CTELKLSDY NP InfluenzaA PMID:34811538 tetramer-sort yes amplicon-seq transitional T cells between effector and memory populations healthy healthy_3 chip0423_394124 PBMC +10421 RIVKEGGGAGGFRF TRAV26-1*01 TRAJ45*01 CASSLAVGEGPQHF TRBV7-9*01 TRBJ1-5*01 HLA-B*08:01 B2M MHCI RAKFKQLL BZLF1 EBV PMID:34811538 tetramer-sort yes amplicon-seq effector memory T cells T1D T1D_4 chip0423_251646 PBMC +10422 CAVSNTGNQFYF TRAV12-2*01 TRAJ49*01 CASSLLGTGGRGYTF TRBV28*01 TRBJ1-2*01 HLA-A*02:01 B2M MHCI LLAGIGTVPI PGT HomoSapiens PMID:34811538 tetramer-sort yes amplicon-seq Naive T cells T1D T1D_4 chip0423_71929 PBMC +10425 CASSLAgg??ggPFEAFF TRBV7-9*01 TRBJ1-1*01 HLA-B*08:01 B2M MHCI RAKFKQLL BZLF1 EBV PMID:34811538 tetramer-sort yes amplicon-seq effector T cells T1D T1D_5 chip0423_174455 PBMC +10426 CASSAALSYEQYF TRBV2*01 TRBJ2-7*01 HLA-A*02:01 B2M MHCI ALAGIGILTV MART1 HomoSapiens PMID:34811538 tetramer-sort yes amplicon-seq natural killer-like T cells T1D T1D_4 chip0423_742740 PBMC +10427 CASSQGQAYEQYF TRBV7-8*01 TRBJ2-7*01 HLA-B*08:01 B2M MHCI FLRGRAYGL EBNA3A EBV PMID:34811538 tetramer-sort yes amplicon-seq central memory T cells T1D T1D_4 chip0423_733675 PBMC +10429 CAVEVDKLIF TRAV41*01 TRAJ34*01 CASSLWYRVETQYF TRBV5-6*01 TRBJ2-5*01 HLA-A*01:01 B2M MHCI CTELKLSDY NP InfluenzaA PMID:34811538 tetramer-sort yes amplicon-seq transitional T cells between effector and memory populations healthy healthy_3 chip0423_414288 PBMC +10431 CADYSSASTLIF TRAV1-1*01 TRAJ3*01 CASSQDGLAATSTDTQYF TRBV4-1*01 TRBJ2-3*01 HLA-A*01:01 B2M MHCI CTELKLSDY NP InfluenzaA PMID:34811538 tetramer-sort yes amplicon-seq transitional T cells between effector and memory populations healthy healthy_3 chip0423_51486 PBMC +10433 CAGSPGGSQPQHF TRBV6-1*01 TRBJ1-5*01 HLA-A*02:01 B2M MHCI RLLPLLALLAL INS HomoSapiens PMID:34811538 tetramer-sort yes amplicon-seq Naive T cells healthy healthy_4 chip0423_809572 PBMC +10434 CALTTYGQNFVF TRAV38-1*01 TRAJ26*01 CSASRDSYEQYF TRBV20-1*01 TRBJ2-7*01 HLA-A*02:01 B2M MHCI YLLEMLWRL LMP1 EBV PMID:34811538 tetramer-sort yes amplicon-seq central memory T cells T1D T1D_4 chip0423_742214 PBMC +10435 CASCQLSVPQYF TRBV6-2*01,TRBV6-3*01 TRBJ2-3*01 HLA-A*02:01 B2M MHCI YVLDHLIVV BRLF1 EBV PMID:34811538 tetramer-sort yes amplicon-seq effector memory T cells healthy healthy_3 chip0423_382341 PBMC +10436 CSARDRGSENTGELFF TRBV20-1*01 TRBJ2-2*01 HLA-B*08:01 B2M MHCI RAKFKQLL BZLF1 EBV PMID:34811538 tetramer-sort yes amplicon-seq effector memory T cells healthy healthy_4 chip0423_296857 PBMC +10437 CAVGASEILF TRAV12-2*01 TRAJ3*01 HLA-A*02:01 B2M MHCI ALGIGILTV MART1 HomoSapiens PMID:34811538 tetramer-sort yes amplicon-seq Naive T cells healthy healthy_3 chip0423_599971 PBMC +10438 CALRGVGCGDRLVF TRAV16*01 TRAJ47*01 HLA-B*08:01 B2M MHCI RAKFKQLL BZLF1 EBV PMID:34811538 tetramer-sort yes amplicon-seq effector memory T cells healthy healthy_4 chip0423_580306 PBMC +10439 CASSLGREIGPIEQFF TRBV7-8*01 TRBJ2-1*01 HLA-B*08:01 B2M MHCI RAKFKQLL BZLF1 EBV PMID:34811538 tetramer-sort yes amplicon-seq effector memory T cells T1D T1D_5 chip0423_166830 PBMC +10440 CACEVPRGAFF TRBV30*01 TRBJ1-1*01 HLA-A*02:01 B2M MHCI LLAGIGTVPI PGT HomoSapiens PMID:34811538 tetramer-sort yes amplicon-seq Naive T cells healthy healthy_4 chip0423_560954 PBMC +10441 FFVTAYQAGPALIF TRAV4*01 TRAJ15*01 HLA-A*02:01 B2M MHCI CINGVCWTV NS3 HCV PMID:34811538 tetramer-sort yes amplicon-seq Naive T cells healthy healthy_3 chip0423_268107 PBMC +10442 CAAMELYC??tGNNRNLIW TRAV8-1*01 TRAJ38*01 CASSQPGRTDEQYF TRBV12-3*01,TRBV12-4*01 TRBJ2-7*01 HLA-A*02:01 B2M MHCI LLIDLTSFL ZNT8 HomoSapiens PMID:34811538 tetramer-sort yes amplicon-seq central memory T cells healthy healthy_3 chip0423_296624 PBMC +10443 CATSVLGNENEQFF TRBV24-1*01 TRBJ2-1*01 HLA-A*02:01 B2M MHCI YVLDHLIVV BRLF1 EBV PMID:34811538 tetramer-sort yes amplicon-seq effector memory T cells healthy healthy_3 chip0423_757925 PBMC +10444 CAVNGNKLVF TRAV41*01 TRAJ47*01 HLA-A*01:01 B2M MHCI HSNLNDATY NP InfluenzaA PMID:34811538 tetramer-sort yes amplicon-seq Naive T cells healthy healthy_3 chip0423_654717 PBMC +10445 CASSEAVNSNQPQHF TRBV2*01 TRBJ1-5*01 HLA-A*02:01 B2M MHCI CINGVCWTV NS3 HCV PMID:34811538 tetramer-sort yes amplicon-seq Naive T cells healthy healthy_4 chip0423_442689 PBMC +10446 CAAGETSYDKVIF TRAV13-1*01 TRAJ50*01 HLA-B*08:01 B2M MHCI RAKFKQLL BZLF1 EBV PMID:34811538 tetramer-sort yes amplicon-seq effector T cells T1D T1D_5 chip0423_573700 PBMC +10447 CALSETNAGKSTF TRAV19*01 TRAJ27*01 HLA-B*08:01 B2M MHCI YAYAKWKL ZNT8 HomoSapiens PMID:34811538 tetramer-sort yes amplicon-seq Naive T cells T1D T1D_6 chip0423_534155 PBMC +10448 CASSSGRVNTEAFF TRBV9*01 TRBJ1-1*01 HLA-A*02:01 B2M MHCI LLAGIGTVPI PGT HomoSapiens PMID:34811538 tetramer-sort yes amplicon-seq Naive T cells healthy healthy_4 chip0423_172575 PBMC +10449 CAVEDQGRSYNTDKLIF TRAV2*01 TRAJ34*01 HLA-B*08:01 B2M MHCI RAKFKQLL BZLF1 EBV PMID:34811538 tetramer-sort yes amplicon-seq effector memory T cells healthy healthy_4 chip0423_145887 PBMC +10451 CASSLGQAYEQYF TRBV7-8*01 TRBJ2-7*01 HLA-B*08:01 B2M MHCI FLRGRAYGL EBNA3A EBV PMID:34811538 tetramer-sort yes amplicon-seq effector memory T cells T1D T1D_6 chip0423_719130 PBMC +10453 CASSYEAGAYGYTF TRBV6-5*01 TRBJ1-2*01 HLA-A*02:01 B2M MHCI ALGIGILTV MART1 HomoSapiens PMID:34811538 tetramer-sort yes amplicon-seq Naive T cells T1D T1D_6 chip0423_97418 PBMC +10454 CAMTEYGNKLVF TRAV12-3*01 TRAJ47*01 HLA-B*08:01 B2M MHCI FLKEKGGL Nef HIV-1 PMID:34811538 tetramer-sort yes amplicon-seq Naive T cells T1D T1D_5 chip0423_83059 PBMC +10456 CAMRETVGGTSYGKLTF TRAV14/DV4*01 TRAJ52*01 HLA-A*02:01 B2M MHCI RMMEYGTTMV GAD65 HomoSapiens PMID:34811538 tetramer-sort yes amplicon-seq Naive T cells healthy healthy_3 chip0423_191618 PBMC +10459 CASSLAVGEGPQHF TRBV7-9*01 TRBJ1-5*01 HLA-B*08:01 B2M MHCI RAKFKQLL BZLF1 EBV PMID:34811538 tetramer-sort yes amplicon-seq effector T cells T1D T1D_4 chip0423_491820 PBMC +10460 CAASGYNTDKLIF TRAV29/DV5*01 TRAJ34*01 HLA-A*01:01 B2M MHCI CTELKLSDY NP InfluenzaA PMID:34811538 tetramer-sort yes amplicon-seq transitional T cells between effector and memory populations healthy healthy_3 chip0423_360504 PBMC +10461 CSALATVLNEKLFF TRBV20-1*01 TRBJ1-4*01 HLA-A*02:01 B2M MHCI YVLDHLIVV BRLF1 EBV PMID:34811538 tetramer-sort yes amplicon-seq effector memory T cells healthy healthy_4 chip0423_784092 PBMC +10463 CAVEDQGRSYNTDKLIF TRAV2*01 TRAJ34*01 HLA-B*08:01 B2M MHCI RAKFKQLL BZLF1 EBV PMID:34811538 tetramer-sort yes amplicon-seq effector memory T cells healthy healthy_4 chip0423_77964 PBMC +10464 CAASETSYDKVIF TRAV13-1*01 TRAJ50*01 CASSLLGHRNSPLHF TRBV7-9*01 TRBJ1-6*01 HLA-B*08:01 B2M MHCI RAKFKQLL BZLF1 EBV PMID:34811538 tetramer-sort yes amplicon-seq transitional T cells between effector and memory populations T1D T1D_5 chip0423_710503 PBMC +10466 CASSQLGGVYNEQFF TRBV7-9*01 TRBJ2-1*01 HLA-B*08:01 B2M MHCI RAKFKQLL BZLF1 EBV PMID:34811538 tetramer-sort yes amplicon-seq effector memory T cells T1D T1D_5 chip0423_869380 PBMC +10467 CASSFAPLDGYTF TRBV28*01 TRBJ1-2*01 HLA-A*02:01 B2M MHCI LLFNILGGWV NS4B HCV PMID:34811538 tetramer-sort yes amplicon-seq Naive T cells T1D T1D_6 chip0423_569102 PBMC +10468 CAVKLRGADGLTF TRAV12-2*01 TRAJ45*01 CASSLLDDGYTF TRBV5-5*01 TRBJ1-2*01 HLA-A*02:01 B2M MHCI LLAGIGTVPI PGT HomoSapiens PMID:34811538 tetramer-sort yes amplicon-seq Naive T cells T1D T1D_6 chip0423_438719 PBMC +10470 CAAPSSGSARQLTF TRAV13-1*01 TRAJ22*01 CASSLLAGGGNTGELFF TRBV5-4*01 TRBJ2-2*01 HLA-A*01:01 B2M MHCI HSNLNDATY NP InfluenzaA PMID:34811538 tetramer-sort yes amplicon-seq Naive T cells healthy healthy_3 chip0423_476010 PBMC +10471 CARRGSGSARPLTF TRAV36/DV7*01 TRAJ22*01 CASIGKTTSTDTQYF TRBV19*01 TRBJ2-3*01 HLA-A*01:01 B2M MHCI CTELKLSDY NP InfluenzaA PMID:34811538 tetramer-sort yes amplicon-seq transitional T cells between effector and memory populations healthy healthy_3 chip0423_56362 PBMC +10472 CAASFQGAQKLIF TRAV29/DV5*01 TRAJ54*01 CAISPGLAGLYNEQFF TRBV10-3*01 TRBJ2-1*01 HLA-B*08:01 B2M MHCI NTYGKRNAV IAPP HomoSapiens PMID:34811538 tetramer-sort yes amplicon-seq Naive T cells T1D T1D_4 chip0423_563297 PBMC +10473 CASSWGPEQYF TRBV7-9*01 TRBJ2-7*01 HLA-B*08:01 B2M MHCI FLRGRAYGL EBNA3A EBV PMID:34811538 tetramer-sort yes amplicon-seq effector T cells T1D T1D_4 chip0423_544212 PBMC +10474 CASSSLLTGIETQYF TRBV28*01 TRBJ2-5*01 HLA-A*02:01 B2M MHCI LLAGIGTVPI PGT HomoSapiens PMID:34811538 tetramer-sort yes amplicon-seq Naive T cells T1D T1D_6 chip0423_376197 PBMC +10475 CAAKETSYDKVIF TRAV13-1*01 TRAJ50*01 CASSLLGRSNTEAFF TRBV7-9*01 TRBJ1-1*01 HLA-B*08:01 B2M MHCI RAKFKQLL BZLF1 EBV PMID:34811538 tetramer-sort yes amplicon-seq effector memory T cells T1D T1D_5 chip0423_270869 PBMC +10476 CAVEDYSSARLLF TRAV2*01 TRAJ31*01 HLA-A*02:01 B2M MHCI GIIYIIYKL P3A CoxsackievirusB PMID:34811538 tetramer-sort yes amplicon-seq Naive T cells healthy healthy_4 chip0423_545651 PBMC +10477 CAFFRtg??gcQKLLF TRAV24*01 TRAJ16*01 CSGGQGPYEQYF TRBV29-1*01 TRBJ2-7*01 HLA-B*08:01 B2M MHCI RAKFKQLL BZLF1 EBV PMID:34811538 tetramer-sort yes amplicon-seq effector memory T cells T1D T1D_4 chip0423_393233 PBMC +10478 CASQLAGGTGELFF TRBV24-1*01 TRBJ2-2*01 HLA-B*08:01 B2M MHCI RAKFKQLL BZLF1 EBV PMID:34811538 tetramer-sort yes amplicon-seq effector T cells T1D T1D_5 chip0423_197114 PBMC +10479 CASSWLGGRYNSPLHF TRAV20*01 TRAJ11*01 CASSWLGDRYNSPLHF TRBV7-9*01 TRBJ1-6*01 HLA-B*08:01 B2M MHCI RAKFKQLL BZLF1 EBV PMID:34811538 tetramer-sort yes amplicon-seq effector memory T cells T1D T1D_5 chip0423_50081 PBMC +10480 CAASETSYDKVIF TRAV13-1*01 TRAJ50*01 CASSSLQPYEQYF TRBV7-9*01 TRBJ2-7*01 HLA-B*08:01 B2M MHCI RAKFKQLL BZLF1 EBV PMID:34811538 tetramer-sort yes amplicon-seq effector memory T cells healthy healthy_5 chip0423_423251 PBMC +10481 CSVGTAYGYTF TRBV29-1*01 TRBJ1-2*01 HLA-B*08:01 B2M MHCI RAKFKQLL BZLF1 EBV PMID:34811538 tetramer-sort yes amplicon-seq effector memory T cells T1D T1D_5 chip0423_694650 PBMC +10482 CIVREGGGADGLTF TRAV26-1*01 TRAJ45*01 CASSTYEGYEQYF TRBV9*01 TRBJ2-7*01 HLA-B*08:01 B2M MHCI RAKFKQLL BZLF1 EBV PMID:34811538 tetramer-sort yes amplicon-seq effector memory T cells healthy healthy_5 chip0423_126241 PBMC +10483 CAVQGSNYKLTF TRAV20*01 TRAJ53*01 HLA-A*02:01 B2M MHCI LLAGIGTVPI PGT HomoSapiens PMID:34811538 tetramer-sort yes amplicon-seq Naive T cells T1D T1D_4 chip0423_60839 PBMC +10484 CASRPLQGAGEKLFF TRBV7-9*01 TRBJ1-4*01 HLA-B*08:01 B2M MHCI RAKFKQLL BZLF1 EBV PMID:34811538 tetramer-sort yes amplicon-seq effector memory T cells T1D T1D_5 chip0423_801030 PBMC +10485 CASSEMWGAPLHF TRBV2*01 TRBJ1-6*01 HLA-A*01:01 B2M MHCI CTELKLSDY NP InfluenzaA PMID:34811538 tetramer-sort yes amplicon-seq transitional T cells between effector and memory populations healthy healthy_3 chip0423_667189 PBMC +10487 CAVGTMAct?SNTGKLIF TRAV8-3*01 TRAJ37*01 CASSLAGREGTQYF TRBV11-3*01 TRBJ2-3*01 HLA-B*08:01 B2M MHCI ELRSRYWAI NP InfluenzaA PMID:34811538 tetramer-sort yes amplicon-seq transitional T cells between effector and memory populations T1D T1D_6 chip0423_835719 PBMC +10488 CILPLGGGTSYGKLTF TRAV26-2*01 TRAJ52*01 HLA-B*08:01 B2M MHCI FLRGRAYGL EBNA3A EBV PMID:34811538 tetramer-sort yes amplicon-seq transitional T cells between effector and memory populations healthy healthy_4 chip0423_675338 PBMC +10489 CALWGQNLVF TRAV8-6*01 TRAJ16*01 CASSPDGTYEQYF TRBV7-9*01 TRBJ2-7*01 HLA-A*02:01 B2M MHCI LNIDLLWSV IGRP HomoSapiens PMID:34811538 tetramer-sort yes amplicon-seq central memory T cells healthy healthy_3 chip0423_851039 PBMC +10490 CASSDGPGRNQPQHF TRBV25-1*01 TRBJ1-5*01 HLA-A*02:01 B2M MHCI HLVEALYLV PREINS HomoSapiens PMID:34811538 tetramer-sort yes amplicon-seq Naive T cells healthy healthy_4 chip0423_781246 PBMC +10491 CAVEKKNTDTLIF TRAV12-2*01 TRAJ34*01 CASSLNVGEGAGNTIYF TRBV7-6*01 TRBJ1-3*01 HLA-B*08:01 B2M MHCI RAKFKQLL BZLF1 EBV PMID:34811538 tetramer-sort yes amplicon-seq central memory T cells healthy healthy_4 chip0423_406886 PBMC +10494 CAADGRA??cRGSRLTL TRAV17*01 TRAJ11*01 HLA-A*02:01 B2M MHCI GILGFVFTL M1 InfluenzaA PMID:34811538 tetramer-sort yes amplicon-seq effector T cells healthy healthy_3 chip0423_481122 PBMC +10495 CASSLIPQFTGELFF TRBV12-3*01,TRBV12-4*01 TRBJ2-2*01 HLA-A*02:01 B2M MHCI ALWMRLLPL PREINS HomoSapiens PMID:34811538 tetramer-sort yes amplicon-seq Naive T cells T1D T1D_6 chip0423_163331 PBMC +10496 CASGPTHGYTF TRBV12-5*01 TRBJ1-2*01 HLA-A*01:01 B2M MHCI CTELKLSDY NP InfluenzaA PMID:34811538 tetramer-sort yes amplicon-seq transitional T cells between effector and memory populations healthy healthy_3 chip0423_732093 PBMC +10497 CASSQLRGVYNEQFF TRBV7-9*01 TRBJ2-1*01 HLA-B*08:01 B2M MHCI RAKFKQLL BZLF1 EBV PMID:34811538 tetramer-sort yes amplicon-seq effector memory T cells T1D T1D_5 chip0423_367014 PBMC +10498 CALSSYSGGYQKVTS TRAV19*01 TRAJ13*01 CSADSYRDIVNYGYTF TRBV20-1*01 TRBJ1-2*01 HLA-A*01:01 B2M MHCI CTELKLSDY NP InfluenzaA PMID:34811538 tetramer-sort yes amplicon-seq transitional T cells between effector and memory populations healthy healthy_3 chip0423_338937 PBMC +10499 CSVGAGGTNEKLFF TRBV29-1*01 TRBJ1-4*01 HLA-A*02:01 B2M MHCI GLCTLVAML BLMF1 EBV PMID:34811538 tetramer-sort yes amplicon-seq effector T cells healthy healthy_4 chip0423_127916 PBMC +10500 CALGASGGYNKLLF TRAV6*01 TRAJ4*01 CASSLVGQNTGELFF TRBV7-9*01 TRBJ2-2*01 HLA-A*02:01 B2M MHCI MVWESGCTV PTPRN HomoSapiens PMID:34811538 tetramer-sort yes amplicon-seq Naive T cells T1D T1D_4 chip0423_666023 PBMC +10501 CSVDLSTAFF TRBV29-1*01 TRBJ1-1*01 HLA-A*01:01 B2M MHCI STNVGSNTY IAPP HomoSapiens PMID:34811538 tetramer-sort yes amplicon-seq Naive T cells T1D T1D_5 chip0423_662827 PBMC +10502 CARSLARPSYYAQYF TRBV11-2*01 TRBJ2-7*01 HLA-A*02:01 B2M MHCI LLMEGVPKSL ZNT8 HomoSapiens PMID:34811538 tetramer-sort yes amplicon-seq effector T cells healthy healthy_4 chip0423_603394 PBMC +10503 CASSPGLADRVTSEQFF TRBV28*01 TRBJ2-1*01 HLA-A*02:01 B2M MHCI LLAGIGTVPI PGT HomoSapiens PMID:34811538 tetramer-sort yes amplicon-seq Naive T cells healthy healthy_3 chip0423_734288 PBMC +10504 CAPLADSIS*LIW TRAV16*01 TRAJ33*01 CSAGRDGTNEKLFF TRBV29-1*01 TRBJ1-4*01 HLA-A*02:01 B2M MHCI FLYALALLL LMP2 EBV PMID:34811538 tetramer-sort yes amplicon-seq central memory T cells T1D T1D_6 chip0423_663784 PBMC +10505 CAVTGYNSLAF TRAV8-4*01 TRAJ7*01 HLA-A*02:01 B2M MHCI FLGKIWPSYK GAG HIV-1 PMID:34811538 tetramer-sort yes amplicon-seq Naive T cells T1D T1D_4 chip0423_387985 PBMC +10507 CAVNQAGTALIF TRAV21*01 TRAJ15*01 CASSEDSLEWYEQYF TRBV5-1*01 TRBJ2-7*01 HLA-A*02:01 B2M MHCI ALWMRLLPLL INS HomoSapiens PMID:34811538 tetramer-sort yes amplicon-seq Naive T cells healthy healthy_3 chip0423_177370 PBMC +10508 CASSRYPVDTQYL TRBV19*01 TRBJ2-3*01 HLA-A*02:01 B2M MHCI GILGFVFTL M1 InfluenzaA PMID:34811538 tetramer-sort yes amplicon-seq effector T cells healthy healthy_3 chip0423_390978 PBMC +10509 CAVNLAAGNKLTF TRAV12-2*01 TRAJ17*01 CASSYSFEGQPQHF TRBV6-5*01 TRBJ1-5*01 HLA-A*02:01 B2M MHCI LLAGIGTVPI PGT HomoSapiens PMID:34811538 tetramer-sort yes amplicon-seq Naive T cells T1D T1D_6 chip0423_702775 PBMC +10510 CAVMGAQKLVF TRAV12-2*01 TRAJ54*01 CASSSGTSGFGRQFF TRBV7-8*01 TRBJ2-1*01 HLA-A*02:01 B2M MHCI LLAGIGTVPI PGT HomoSapiens PMID:34811538 tetramer-sort yes amplicon-seq Naive T cells healthy healthy_3 chip0423_11500 PBMC +10511 CASSLVGGNNSPLHF TRAV36/DV7*01 TRAJ11*01 CASSLVGGNNSPLHF TRBV7-9*01 TRBJ1-6*01 HLA-B*08:01 B2M MHCI RAKFKQLL BZLF1 EBV PMID:34811538 tetramer-sort yes amplicon-seq effector memory T cells T1D T1D_5 chip0423_538134 PBMC +10512 CASSLGQAYEQYF TRBV7-8*01 TRBJ2-7*01 HLA-B*08:01 B2M MHCI FLRGRAYGL EBNA3A EBV PMID:34811538 tetramer-sort yes amplicon-seq effector T cells T1D T1D_6 chip0423_353990 PBMC +10513 GAVSDWASWGYQTVTF TRAV8-4*01 TRAJ13*01 HLA-B*08:01 B2M MHCI RAKFKQLL BZLF1 EBV PMID:34811538 tetramer-sort yes amplicon-seq effector T cells T1D T1D_4 chip0423_321381 PBMC +10514 CASSQMSDTQYF TRBV6-2*01,TRBV6-3*01 TRBJ2-3*01 HLA-A*02:01 B2M MHCI YVLDHLIVV BRLF1 EBV PMID:34811538 tetramer-sort yes amplicon-seq effector memory T cells healthy healthy_3 chip0423_738189 PBMC +10515 RAGSLSALGGVYGYTF TRBV27*01 TRBJ1-2*01 HLA-A*02:01 B2M MHCI FMYSDFHFI PA InfluenzaA PMID:34811538 tetramer-sort yes amplicon-seq Naive T cells healthy healthy_3 chip0423_539798 PBMC +10516 CADYSSASKIIF TRAV1-1*01 TRAJ3*01 CASSQDGLAATSTDTQYF TRBV4-1*01 TRBJ2-3*01 HLA-A*01:01 B2M MHCI CTELKLSDY NP InfluenzaA PMID:34811538 tetramer-sort yes amplicon-seq transitional T cells between effector and memory populations healthy healthy_3 chip0423_381136 PBMC +10517 CALSSYSGGYQKVTF TRAV19*01 TRAJ13*01 CSADSYRDIDNYGYTF TRBV20-1*01 TRBJ1-2*01 HLA-A*01:01 B2M MHCI CTELKLSDY NP InfluenzaA PMID:34811538 tetramer-sort yes amplicon-seq transitional T cells between effector and memory populations healthy healthy_3 chip0423_170605 PBMC +10518 CAVNFGNEKLTF TRAV12-2*01 TRAJ48*01 CASSFGGPYEQYF TRBV27*01 TRBJ2-7*01 HLA-A*02:01 B2M MHCI ALGIGILTV MART1 HomoSapiens PMID:34811538 tetramer-sort yes amplicon-seq Naive T cells healthy healthy_3 chip0423_704501 PBMC +10519 CAGGFQKLVF TRAV12-2*01 TRAJ8*01 CASSSRTASYNEQFF TRBV13*01 TRBJ2-1*01 HLA-A*02:01 B2M MHCI ALWMRLLPL PREINS HomoSapiens PMID:34811538 tetramer-sort yes amplicon-seq Naive T cells T1D T1D_6 chip0423_383559 PBMC +10520 CALNGGNYSQNFVF TRAV19*01 TRAJ26*01 HLA-A*01:01 B2M MHCI VSATAGTTVY GAD2 HomoSapiens PMID:34811538 tetramer-sort yes amplicon-seq Naive T cells healthy healthy_3 chip0423_382362 PBMC +10522 CLLPLARGPRYGNLTF TRAV4*01,TRAV26-2*01 TRAJ52*01 CASGKYNEQFF TRBV19*01 TRBJ2-1*01 HLA-A*02:01 B2M MHCI YVLDHLIVV BRLF1 EBV PMID:34811538 tetramer-sort yes amplicon-seq effector memory T cells healthy healthy_3 chip0423_790105 PBMC +10523 CASQLAGGTGELFF TRBV24-1*01 TRBJ2-2*01 HLA-B*08:01 B2M MHCI RAKFKQLL BZLF1 EBV PMID:34811538 tetramer-sort yes amplicon-seq effector T cells T1D T1D_5 chip0423_479520 PBMC +10525 CASTPFGGRYEQYF TRBV28*01 TRBJ2-7*01 HLA-A*02:01 B2M MHCI RLLYPDYQI ZNT8 HomoSapiens PMID:34811538 tetramer-sort yes amplicon-seq Naive T cells T1D T1D_6 chip0423_484046 PBMC +10526 CAMSTSNFGNEKLTF TRAV12-3*01 TRAJ48*01 CASSQKIGGGDNEQFF TRBV3-1*01 TRBJ2-1*01 HLA-A*02:01 B2M MHCI LLAGIGTVPI PGT HomoSapiens PMID:34811538 tetramer-sort yes amplicon-seq Naive T cells T1D T1D_6 chip0423_383019 PBMC +10529 CASSEELAGGEQYF TRBV10-1*01 TRBJ2-7*01 HLA-A*02:01 B2M MHCI LLAGIGTVPI PGT HomoSapiens PMID:34811538 tetramer-sort yes amplicon-seq Naive T cells healthy healthy_3 chip0423_330010 PBMC +10530 CASSLPNEQFF TRBV28*01 TRBJ2-1*01 HLA-A*02:01 B2M MHCI LNIDLLWSV IGRP HomoSapiens PMID:34811538 tetramer-sort yes amplicon-seq Naive T cells healthy healthy_3 chip0423_138686 PBMC +10531 CASSGGNSGRPYNEQFF TRBV11-1*01 TRBJ2-1*01 HLA-B*08:01 B2M MHCI YVMVTAAL G6PC2 HomoSapiens PMID:34811538 tetramer-sort yes amplicon-seq Naive T cells T1D T1D_4 chip0423_873905 PBMC +10532 CAALETSYDKVIF TRAV13-1*01 TRAJ50*01 HLA-B*08:01 B2M MHCI RAKFKQLL BZLF1 EBV PMID:34811538 tetramer-sort yes amplicon-seq effector memory T cells T1D T1D_5 chip0423_234230 PBMC +10533 CAVETGANNLSF TRAV3*01 TRAJ36*01 CASSLPGQGVSEQFF TRBV11-1*01 TRBJ2-1*01 HLA-A*02:01 B2M MHCI LLSLFSLWL ZNT8 HomoSapiens PMID:34811538 tetramer-sort yes amplicon-seq Naive T cells healthy healthy_3 chip0423_741303 PBMC +10534 CAEAGTALLF TRAV13-2*01 TRAJ15*01 HLA-A*01:01 B2M MHCI CTELKLSDY NP InfluenzaA PMID:34811538 tetramer-sort yes amplicon-seq transitional T cells between effector and memory populations T1D T1D_5 chip0423_577599 PBMC +10535 CASSLVSGLSSYEQYF TRBV11-1*01 TRBJ2-7*01 HLA-A*02:01 B2M MHCI YLLEMLWRL LMP1 EBV PMID:34811538 tetramer-sort yes amplicon-seq central memory T cells T1D T1D_4 chip0423_206804 PBMC +10537 CAPHQEg?aSYIPTF TRAV13-1*01 TRAJ6*01 HLA-A*02:01 B2M MHCI ALGIGILTV MART1 HomoSapiens PMID:34811538 tetramer-sort yes amplicon-seq Naive T cells healthy healthy_3 chip0423_132504 PBMC +10540 CAMRFQQLVF TRAV14/DV4*01 TRAJ8*01 CASSQGPFTRQPQHF TRBV3-1*01 TRBJ1-5*01 HLA-A*02:01 B2M MHCI YVLDHLIVV BRLF1 EBV PMID:34811538 tetramer-sort yes amplicon-seq effector memory T cells healthy healthy_3 chip0423_764590 PBMC +10541 CAVQMSL??cGTSPSIF TRAV20*01 TRAJ40*01 HLA-A*02:01 B2M MHCI YVLDHLIVV BRLF1 EBV PMID:34811538 tetramer-sort yes amplicon-seq effector memory T cells healthy healthy_3 chip0423_156956 PBMC +10542 CASRVGREPTGELFF TRBV3-1*01 TRBJ2-2*01 HLA-B*08:01 B2M MHCI RAKFKQLL BZLF1 EBV PMID:34811538 tetramer-sort yes amplicon-seq effector memory T cells healthy healthy_4 chip0423_273315 PBMC +10543 CAMSLSNFGNEKLTF TRAV12-3*01 TRAJ48*01 HLA-A*02:01 B2M MHCI LLAGIGTVPI PGT HomoSapiens PMID:34811538 tetramer-sort yes amplicon-seq Naive T cells healthy healthy_3 chip0423_7167 PBMC +10544 CASRFGRAYEQYF TRBV7-8*01 TRBJ2-7*01 HLA-B*08:01 B2M MHCI FLRGRAYGL EBNA3A EBV PMID:34811538 tetramer-sort yes amplicon-seq effector memory T cells T1D T1D_4 chip0423_742373 PBMC +10545 CAVEDQGRSYNTDKLIF TRAV2*01 TRAJ34*01 CASSLNVGEGAGNTIYF TRBV7-6*01 TRBJ1-3*01 HLA-B*08:01 B2M MHCI RAKFKQLL BZLF1 EBV PMID:34811538 tetramer-sort yes amplicon-seq effector T cells healthy healthy_4 chip0423_429899 PBMC +10548 CAGHRVR??gSNYKLPF TRAV35*01 TRAJ53*01 HLA-A*02:01 B2M MHCI GILGFVFTL M1 InfluenzaA PMID:34811538 tetramer-sort yes amplicon-seq transitional T cells between effector and memory populations healthy healthy_3 chip0423_651564 PBMC +10549 CASSPLGSHEKLFF TRAV36/DV7*01 TRAJ5*01 CASSPLGSNEKLFF TRBV7-9*01 TRBJ1-4*01 HLA-B*08:01 B2M MHCI RAKFKQLL BZLF1 EBV PMID:34811538 tetramer-sort yes amplicon-seq effector memory T cells T1D T1D_5 chip0423_21846 PBMC +10551 CASSQDLRGEQYF TRBV4-2*01 TRBJ2-7*01 HLA-B*08:01 B2M MHCI CPLSKILL LMP2A EBV PMID:34811538 tetramer-sort yes amplicon-seq effector T cells healthy healthy_5 chip0423_161749 PBMC +10553 CAMRDPRTGANNLFF TRAV14/DV4*01 TRAJ36*01 CASSQAPGQRTGELFF TRBV4-1*01 TRBJ2-2*01 HLA-B*08:01 B2M MHCI RAKFKQLL BZLF1 EBV PMID:34811538 tetramer-sort yes amplicon-seq effector memory T cells healthy healthy_4 chip0423_154214 PBMC +10554 CASSRYSVDTQYF TRBV19*01 TRBJ2-3*01 HLA-A*02:01 B2M MHCI GILGFVFTL M1 InfluenzaA PMID:34811538 tetramer-sort yes amplicon-seq effector T cells healthy healthy_3 chip0423_821602 PBMC +10555 CALSSYSGGYQKVTF TRAV19*01 TRAJ13*01 HLA-A*01:01 B2M MHCI CTELKLSDY NP InfluenzaA PMID:34811538 tetramer-sort yes amplicon-seq effector T cells healthy healthy_3 chip0423_395009 PBMC +10556 CAARETSYDKVIF TRAV13-1*01 TRAJ50*01 HLA-B*08:01 B2M MHCI RAKFKQLL BZLF1 EBV PMID:34811538 tetramer-sort yes amplicon-seq transitional T cells between effector and memory populations T1D T1D_5 chip0423_653430 PBMC +10558 CATMDSNYQLIW TRAV12-1*01 TRAJ33*01 CASSQDRYNEQFF TRBV4-3*01 TRBJ2-1*01 HLA-A*01:01 B2M MHCI HSNLNDATY NP InfluenzaA PMID:34811538 tetramer-sort yes amplicon-seq Naive T cells T1D T1D_4 chip0423_332016 PBMC +10559 CASSQAPGQRTGELFF TRBV4-1*01 TRBJ2-2*01 HLA-B*08:01 B2M MHCI RAKFKQLL BZLF1 EBV PMID:34811538 tetramer-sort yes amplicon-seq effector memory T cells healthy healthy_4 chip0423_186958 PBMC +10560 YASSFIGGag?GIFNYGYTF TRBV5-1*01 TRBJ1-2*01 HLA-A*02:01 B2M MHCI FLYALALLL LMP2 EBV PMID:34811538 tetramer-sort yes amplicon-seq central memory T cells T1D T1D_4 chip0423_848309 PBMC +10561 CVVNLDTDKLIF TRAV12-1*01 TRAJ34*01 CASSPSNgg?GRSEAQYF TRBV4-3*01 TRBJ2-5*01 HLA-A*02:01 B2M MHCI LLAGIGTVPI PGT HomoSapiens PMID:34811538 tetramer-sort yes amplicon-seq Naive T cells T1D T1D_6 chip0423_695996 PBMC +10562 LASPKPGD*LYF TRAV38-1*01 TRAJ49*01 CASSFRGGGINEQFF TRBV11-2*01 TRBJ2-1*01 HLA-B*08:01 B2M MHCI YAFLHATDL GAD2 HomoSapiens PMID:34811538 tetramer-sort yes amplicon-seq Naive T cells healthy healthy_5 chip0423_843746 PBMC +10563 CASSSSLNYNEQFF TRBV12-3*01,TRBV12-4*01 TRBJ2-1*01 HLA-A*02:01 B2M MHCI LLAGIGTVPI PGT HomoSapiens PMID:34811538 tetramer-sort yes amplicon-seq Naive T cells T1D T1D_6 chip0423_872767 PBMC +10564 CASSDLRQTSSYNEQFF TRBV19*01 TRBJ2-1*01 HLA-A*01:01 B2M MHCI CTELKLSDY NP InfluenzaA PMID:34811538 tetramer-sort yes amplicon-seq effector T cells healthy healthy_3 chip0423_373616 PBMC +10565 CAVSDGEGAQKLVF TRAV8-6*01 TRAJ54*01 HLA-B*08:01 B2M MHCI RAKFKQLL BZLF1 EBV PMID:34811538 tetramer-sort yes amplicon-seq effector T cells T1D T1D_4 chip0423_776104 PBMC +10566 CAIGSGNTGKLIF TRAV12-3*01 TRAJ37*01 CAIDRNTEAFF TRBV2*01 TRBJ1-1*01 HLA-A*02:01 B2M MHCI GILGFVFTL M1 InfluenzaA PMID:34811538 tetramer-sort yes amplicon-seq Naive T cells T1D T1D_6 chip0423_546338 PBMC +10568 CASSIRSGGPQHF TRBV19*01 TRBJ1-5*01 HLA-A*02:01 B2M MHCI GILGFVFTL M1 InfluenzaA PMID:34811538 tetramer-sort yes amplicon-seq transitional T cells between effector and memory populations healthy healthy_3 chip0423_621326 PBMC +10569 CASSLGARGEGYTF TRBV12-3*01,TRBV12-4*01 TRBJ1-2*01 HLA-B*08:01 B2M MHCI RAKFKQLL BZLF1 EBV PMID:34811538 tetramer-sort yes amplicon-seq effector memory T cells T1D T1D_5 chip0423_485470 PBMC +10570 CSAPGTGADTGNTIYF TRBV20-1*01 TRBJ1-3*01 HLA-A*01:01 B2M MHCI CTELKLSDY NP InfluenzaA PMID:34811538 tetramer-sort yes amplicon-seq effector memory T cells healthy healthy_3 chip0423_688263 PBMC +10571 CAASETSYDKVIF TRAV13-1*01 TRAJ50*01 CASSLLGRSTEAFF TRBV7-9*01 TRBJ1-1*01 HLA-B*08:01 B2M MHCI RAKFKQLL BZLF1 EBV PMID:34811538 tetramer-sort yes amplicon-seq effector memory T cells T1D T1D_5 chip0423_454766 PBMC +10572 CASSYLQGMNSPLHF TRBV7-2*01 TRBJ1-6*01 HLA-B*08:01 B2M MHCI RAKFKQLL BZLF1 EBV PMID:34811538 tetramer-sort yes amplicon-seq effector memory T cells T1D T1D_5 chip0423_65022 PBMC +10573 CATDGNYGQNFVF TRAV17*01 TRAJ26*01 CASSLYAAYNEQFF TRBV11-3*01 TRBJ2-1*01 HLA-A*02:01 B2M MHCI VMNILLQYV GAD65 HomoSapiens PMID:34811538 tetramer-sort yes amplicon-seq Naive T cells healthy healthy_3 chip0423_189530 PBMC +10574 CAETGSNQAGTALIF TRAV13-2*01 TRAJ15*01 CASSQDGYGGDQPQHF TRBV4-1*01 TRBJ1-5*01 HLA-A*01:01 B2M MHCI CTELKLSDY NP InfluenzaA PMID:34811538 tetramer-sort yes amplicon-seq transitional T cells between effector and memory populations healthy healthy_3 chip0423_204631 PBMC +10575 CASSLSQNTEAFF TRBV27*01 TRBJ1-1*01 HLA-A*02:01 B2M MHCI LLAGIGTVPI PGT HomoSapiens PMID:34811538 tetramer-sort yes amplicon-seq Naive T cells T1D T1D_6 chip0423_154455 PBMC +10577 CALVNYGGSQGNLIF TRAV19*01 TRAJ42*01 CAVSRAGAYEQYF TRBV28*01 TRBJ2-7*01 HLA-A*02:01 B2M MHCI YLLEMLWRL LMP1 EBV PMID:34811538 tetramer-sort yes amplicon-seq central memory T cells T1D T1D_4 chip0423_220945 PBMC +10578 CSVGAGGTNEKLFF TRBV29-1*01 TRBJ1-4*01 HLA-A*02:01 B2M MHCI GLCTLVAML BLMF1 EBV PMID:34811538 tetramer-sort yes amplicon-seq effector memory T cells healthy healthy_4 chip0423_513968 PBMC +10580 CASSSGQAYEQYF TRBV7-8*01 TRBJ2-7*01 HLA-B*08:01 B2M MHCI FLRGRAYGL EBNA3A EBV PMID:34811538 tetramer-sort yes amplicon-seq effector memory T cells healthy healthy_4 chip0423_879860 PBMC +10581 CASCRDGTYEQYF TRBV10-3*01 TRBJ2-7*01 HLA-A*01:01 B2M MHCI CTELKLSDY NP InfluenzaA PMID:34811538 tetramer-sort yes amplicon-seq effector T cells healthy healthy_3 chip0423_750325 PBMC +10582 CSGSPEALLF TRAV27*01 TRAJ34*01 CASSLWLGTAYEQYF TRBV5-1*01 TRBJ2-7*01 HLA-A*01:01 B2M MHCI VTDAAHLLI ZNT8 HomoSapiens PMID:34811538 tetramer-sort yes amplicon-seq Naive T cells healthy healthy_3 chip0423_849548 PBMC +10583 CASSSDGMNTEAFF TRBV10-2*01 TRBJ1-1*01 HLA-A*02:01 B2M MHCI CLGGLLTMV LMP2A EBV PMID:34811538 tetramer-sort yes amplicon-seq central memory T cells healthy healthy_4 chip0423_630384 PBMC +10584 CASSVESGELFF TRBV9*01 TRBJ2-2*01 HLA-A*02:01 B2M MHCI ALAGIGILTV MART1 HomoSapiens PMID:34811538 tetramer-sort yes amplicon-seq Naive T cells healthy healthy_3 chip0423_284663 PBMC +10585 CASSDIREGQGEAFF TRBV10-2*01 TRBJ1-1*01 HLA-B*08:01 B2M MHCI QAKWRLQTL EBNA3A EBV PMID:34811538 tetramer-sort yes amplicon-seq transitional T cells between effector and memory populations T1D T1D_6 chip0423_421366 PBMC +10586 CASSIWRLTTEAFF TRBV19*01 TRBJ1-1*01 HLA-A*01:01 B2M MHCI ALDIEIATY GFAP HomoSapiens PMID:34811538 tetramer-sort yes amplicon-seq Naive T cells T1D T1D_6 chip0423_377678 PBMC +10587 CAGGHGGSQGNLIF TRAV27*01 TRAJ42*01 CASSTSGANQPQHF TRBV19*01 TRBJ1-5*01 HLA-A*02:01 B2M MHCI GILGFVFTL M1 InfluenzaA PMID:34811538 tetramer-sort yes amplicon-seq transitional T cells between effector and memory populations healthy healthy_3 chip0423_149985 PBMC +10588 CAVRDYKLSF TRAV12-2*01 TRAJ20*01 CSARGVTSSRGVNEQFF TRBV20-1*01 TRBJ2-1*01 HLA-A*02:01 B2M MHCI LLAGIGTVPI PGT HomoSapiens PMID:34811538 tetramer-sort yes amplicon-seq central memory T cells healthy healthy_3 chip0423_877180 PBMC +10591 CAASETSYDKVIF TRAV13-1*01 TRAJ50*01 HLA-B*08:01 B2M MHCI RAKFKQLL BZLF1 EBV PMID:34811538 tetramer-sort yes amplicon-seq effector memory T cells T1D T1D_5 chip0423_456405 PBMC +10592 CASSLIRGTGELFF TRBV3-1*01 TRBJ2-2*01 HLA-B*08:01 B2M MHCI RAKFKQLL BZLF1 EBV PMID:34811538 tetramer-sort yes amplicon-seq effector memory T cells healthy healthy_4 chip0423_871401 PBMC +10593 CASSGTPFSYEQYF TRBV6-1*01 TRBJ2-7*01 HLA-A*02:01 B2M MHCI VMNILLQYV GAD65 HomoSapiens PMID:34811538 tetramer-sort yes amplicon-seq effector memory T cells healthy healthy_3 chip0423_517383 PBMC +10596 CASSQAPGQRTGELCF TRBV4-1*01 TRBJ2-2*01 HLA-B*08:01 B2M MHCI RAKFKQLL BZLF1 EBV PMID:34811538 tetramer-sort yes amplicon-seq effector T cells healthy healthy_4 chip0423_486294 PBMC +10597 CAVPNASGGSYIPTF TRAV2*01 TRAJ6*01 HLA-A*01:01 B2M MHCI CTELKLSDY NP InfluenzaA PMID:34811538 tetramer-sort yes amplicon-seq transitional T cells between effector and memory populations healthy healthy_3 chip0423_41870 PBMC +10598 CASSQVNNPGDGYTF TRBV14*01 TRBJ1-2*01 HLA-B*08:01 B2M MHCI QAKWRLQTL EBNA3A EBV PMID:34811538 tetramer-sort yes amplicon-seq effector memory T cells T1D T1D_4 chip0423_519374 PBMC +10599 CSAIEFRDPNQPQHF TRBV20-1*01 TRBJ1-5*01 HLA-A*02:01 B2M MHCI YLLEMLWRL LMP1 EBV PMID:34811538 tetramer-sort yes amplicon-seq central memory T cells T1D T1D_4 chip0423_489043 PBMC +10601 CASSSLTRNSPLHF TRAV36/DV7*01 TRAJ11*01 CASSSLTRNSPLHF TRBV7-9*01 TRBJ1-6*01 HLA-B*08:01 B2M MHCI RAKFKQLL BZLF1 EBV PMID:34811538 tetramer-sort yes amplicon-seq effector memory T cells T1D T1D_5 chip0423_96987 PBMC +10602 CASSLGQAYAQYF TRBV7-8*01 TRBJ2-7*01 HLA-B*08:01 B2M MHCI FLRGRAYGL EBNA3A EBV PMID:34811538 tetramer-sort yes amplicon-seq effector memory T cells T1D T1D_6 chip0423_100627 PBMC +10603 CAEKQgc?QGNLIF TRAV13-2*01 TRAJ42*01 HLA-A*02:01 B2M MHCI LLAGIGTVPI PGT HomoSapiens PMID:34811538 tetramer-sort yes amplicon-seq Naive T cells healthy healthy_3 chip0423_457086 PBMC +10605 CAAAETSYDKVIF TRAV13-1*01 TRAJ50*01 CASQLAGGTGELFF TRBV24-1*01 TRBJ2-2*01 HLA-B*08:01 B2M MHCI RAKFKQLL BZLF1 EBV PMID:34811538 tetramer-sort yes amplicon-seq effector memory T cells T1D T1D_5 chip0423_320407 PBMC +10606 CASSLRGINEQFF TRBV7-8*01 TRBJ2-1*01 HLA-B*08:01 B2M MHCI MMIARFKM GAD2 HomoSapiens PMID:34811538 tetramer-sort yes amplicon-seq Naive T cells T1D T1D_5 chip0423_171005 PBMC +10607 CSVGTGGTNEKLFF TRBV29-1*01 TRBJ1-4*01 HLA-A*02:01 B2M MHCI GLCTLVAML BLMF1 EBV PMID:34811538 tetramer-sort yes amplicon-seq effector T cells T1D T1D_6 chip0423_557246 PBMC +10608 CAMRRRGNFNKFYF TRAV14/DV4*01 TRAJ21*01 CSVVVSEPISYNEQFF TRBV29-1*01 TRBJ2-1*01 HLA-A*02:01 B2M MHCI YVLDHLIVV BRLF1 EBV PMID:34811538 tetramer-sort yes amplicon-seq effector memory T cells healthy healthy_3 chip0423_512203 PBMC +10609 CASSGSLGVGDAEAFF TRBV9*01 TRBJ1-1*01 HLA-B*08:01 B2M MHCI ALKCKGFHV NP InfluenzaA PMID:34811538 tetramer-sort yes amplicon-seq Naive T cells healthy healthy_5 chip0423_134463 PBMC +10610 CIVREGGGAVGLAF TRAV26-1*01 TRAJ45*01 HLA-B*08:01 B2M MHCI RAKFKQLL BZLF1 EBV PMID:34811538 tetramer-sort yes amplicon-seq effector memory T cells T1D T1D_4 chip0423_800366 PBMC +10611 CAMRERTSGTYKYIF TRAV14/DV4*01 TRAJ40*01 CASSTPGLSTDTQYF TRBV7-9*01 TRBJ2-3*01 HLA-B*08:01 B2M MHCI WPTVRERM Nef HIV-1 PMID:34811538 tetramer-sort yes amplicon-seq Naive T cells T1D T1D_5 chip0423_730735 PBMC +10612 CAVIDGEDRHYQFIW TRAV3*01 TRAJ33*01 CASSLWTGGRTGELFF TRBV5-6*01 TRBJ2-2*01 HLA-A*02:01 B2M MHCI SLISGMWLL VP2 RotavirusA PMID:34811538 tetramer-sort yes amplicon-seq Naive T cells T1D T1D_6 chip0423_788209 PBMC +10613 CAVLPSKDYKLSF TRAV12-3*01 TRAJ20*01 CASRLAVGEGPQHC TRBV7-9*01 TRBJ1-5*01 HLA-A*01:01 B2M MHCI CTELKLSDY NP InfluenzaA PMID:34811538 tetramer-sort yes amplicon-seq transitional T cells between effector and memory populations healthy healthy_3 chip0423_183950 PBMC +10614 CASSLRQGGQETQYF TRBV13*01 TRBJ2-5*01 HLA-B*08:01 B2M MHCI MMIARFKM GAD2 HomoSapiens PMID:34811538 tetramer-sort yes amplicon-seq Naive T cells T1D T1D_6 chip0423_494026 PBMC +10616 CAASETSYDKVIF TRAV13-1*01 TRAJ50*01 CASRVGREPTGELFF TRBV3-1*01 TRBJ2-2*01 HLA-B*08:01 B2M MHCI RAKFKQLL BZLF1 EBV PMID:34811538 tetramer-sort yes amplicon-seq effector memory T cells healthy healthy_4 chip0423_668731 PBMC +10617 CASSLGEAYEQYF TRBV27*01 TRBJ2-7*01 HLA-A*02:01 B2M MHCI ALGIGILTV MART1 HomoSapiens PMID:34811538 tetramer-sort yes amplicon-seq Naive T cells healthy healthy_3 chip0423_494995 PBMC +10618 CAVGAIISGTSSSLF TRAV8-3*01 TRAJ40*01 CASSYFANEQFF TRBV6-2*01,TRBV6-3*01 TRBJ2-1*01 HLA-A*02:01 B2M MHCI LLAGIGTVPI PGT HomoSapiens PMID:34811538 tetramer-sort yes amplicon-seq Naive T cells T1D T1D_6 chip0423_477080 PBMC +10620 CASSSLSGGAGNEQFF TRBV7-9*01 TRBJ2-1*01 HLA-B*08:01 B2M MHCI RAKFKQLL BZLF1 EBV PMID:34811538 tetramer-sort yes amplicon-seq effector memory T cells T1D T1D_5 chip0423_824060 PBMC +10621 CSAWTRDSYNEQFF TRBV20-1*01 TRBJ2-1*01 HLA-A*02:01 B2M MHCI GILGFVFTL M1 InfluenzaA PMID:34811538 tetramer-sort yes amplicon-seq central memory T cells healthy healthy_4 chip0423_815120 PBMC +10623 CASCRAGTYEQYF TRBV10-3*01 TRBJ2-7*01 HLA-A*01:01 B2M MHCI CTELKLSDY NP InfluenzaA PMID:34811538 tetramer-sort yes amplicon-seq transitional T cells between effector and memory populations healthy healthy_3 chip0423_376082 PBMC +10624 CAPTGGGADGLTF TRAV12-2*01 TRAJ45*01 CATIKSTVSGYGYTF TRBV6-1*01 TRBJ1-2*01 HLA-A*02:01 B2M MHCI LLAGIGTVPI PGT HomoSapiens PMID:34811538 tetramer-sort yes amplicon-seq Naive T cells T1D T1D_4 chip0423_670356 PBMC +10626 CAATETSYDKVIF TRAV13-1*01 TRAJ50*01 HLA-B*08:01 B2M MHCI RAKFKQLL BZLF1 EBV PMID:34811538 tetramer-sort yes amplicon-seq effector memory T cells T1D T1D_5 chip0423_122947 PBMC +10627 CASSPWTTNTGELFF TRBV27*01 TRBJ2-2*01 HLA-A*02:01 B2M MHCI GILGFVFTL M1 InfluenzaA PMID:34811538 tetramer-sort yes amplicon-seq transitional T cells between effector and memory populations healthy healthy_4 chip0423_812050 PBMC +10628 CASSMLVTGEKLFF TRBV19*01 TRBJ1-4*01 HLA-A*02:01 B2M MHCI LLAGIGTVPI PGT HomoSapiens PMID:34811538 tetramer-sort yes amplicon-seq Naive T cells healthy healthy_4 chip0423_672362 PBMC +10629 CAMRGLNSGGYQKVTF TRAV14/DV4*01 TRAJ13*01 CASSPRTSGSGETQYF TRBV28*01 TRBJ2-5*01 HLA-A*02:01 B2M MHCI VVTGVLVYL ZNT8 HomoSapiens PMID:34811538 tetramer-sort yes amplicon-seq Naive T cells healthy healthy_3 chip0423_198712 PBMC +10630 CAYFSGANSKLTF TRAV38-1*01 TRAJ56*01 CASSPGLAETYQETQYF TRBV27*01 TRBJ2-5*01 HLA-A*02:01 B2M MHCI GIIYIIYKL P3A CoxsackievirusB PMID:34811538 tetramer-sort yes amplicon-seq Naive T cells healthy healthy_3 chip0423_100487 PBMC +10631 CAVADQRTSYNPVKLIF TRAV2*01 TRAJ34*01 HLA-B*08:01 B2M MHCI RAKFKQLL BZLF1 EBV PMID:34811538 tetramer-sort yes amplicon-seq effector T cells healthy healthy_4 chip0423_787914 PBMC +10633 CAVSDQW??gGSQKVTF TRAV8-6*01 TRAJ13*01 CASSTLAGGLNEQFF TRBV27*01 TRBJ2-1*01 HLA-A*02:01 B2M MHCI LLAGIGTVPI PGT HomoSapiens PMID:34811538 tetramer-sort yes amplicon-seq Naive T cells healthy healthy_4 chip0423_400322 PBMC +10634 CAS*RPGRGGGNYQLTF TRAV36/DV7*01 TRAJ53*01 CASSPSGAYEQYF TRBV11-1*01 TRBJ2-7*01 HLA-A*02:01 B2M MHCI RMMEYGTTMV GAD65 HomoSapiens PMID:34811538 tetramer-sort yes amplicon-seq Naive T cells healthy healthy_3 chip0423_377173 PBMC +10635 CAYMPGNQFYF TRAV38-1*01 TRAJ49*01 CASNDGRANQPQHF TRBV28*01 TRBJ1-5*01 HLA-A*02:01 B2M MHCI KMYAFTLES ZNT8 HomoSapiens PMID:34811538 tetramer-sort yes amplicon-seq Naive T cells T1D T1D_4 chip0423_879045 PBMC +10636 CASSIRSSYEQYF TRBV19*01 TRBJ2-7*01 HLA-A*02:01 B2M MHCI GILGFVFTL M1 InfluenzaA PMID:34811538 tetramer-sort yes amplicon-seq transitional T cells between effector and memory populations healthy healthy_3 chip0423_666033 PBMC +10637 CASSLAVGEGPQHF TRBV7-9*01 TRBJ1-5*01 HLA-B*08:01 B2M MHCI RAKFKQLL BZLF1 EBV PMID:34811538 tetramer-sort yes amplicon-seq effector T cells T1D T1D_4 chip0423_756655 PBMC +10640 CAPDNYCACFVF TRAV12-2*01 TRAJ26*01 CASTPGSTQYF TRBV10-2*01 TRBJ2-5*01 HLA-A*02:01 B2M MHCI SLISGMWLL VP2 RotavirusA PMID:34811538 tetramer-sort yes amplicon-seq Naive T cells T1D T1D_6 chip0423_466058 PBMC +10641 CASSLAVGEGPQHF TRBV7-9*01 TRBJ1-5*01 HLA-B*08:01 B2M MHCI RAKFKQLL BZLF1 EBV PMID:34811538 tetramer-sort yes amplicon-seq effector T cells T1D T1D_4 chip0423_866559 PBMC +10643 CASSLGVAGDYNEQFF TRBV7-6*01 TRBJ2-1*01 HLA-A*01:01 B2M MHCI STNVGSNTY IAPP HomoSapiens PMID:34811538 tetramer-sort yes amplicon-seq Naive T cells T1D T1D_4 chip0423_220743 PBMC +10644 CASSLLGGGNTIYF TRBV7-9*01 TRBJ1-3*01 HLA-B*08:01 B2M MHCI RAKFKQLL BZLF1 EBV PMID:34811538 tetramer-sort yes amplicon-seq effector memory T cells T1D T1D_5 chip0423_139395 PBMC +10646 CASSQDGLAATSTDTQYF TRBV4-1*01 TRBJ2-3*01 HLA-A*01:01 B2M MHCI CTELKLSDY NP InfluenzaA PMID:34811538 tetramer-sort yes amplicon-seq transitional T cells between effector and memory populations healthy healthy_3 chip0423_152631 PBMC +10648 CAASETSYDKVIF TRAV13-1*01 TRAJ50*01 CASSFTGQVNTEAFF TRBV12-3*01,TRBV12-4*01 TRBJ1-1*01 HLA-B*08:01 B2M MHCI RAKFKQLL BZLF1 EBV PMID:34811538 tetramer-sort yes amplicon-seq effector memory T cells T1D T1D_5 chip0423_96258 PBMC +10649 CASRVGREPTGELFF TRBV3-1*01 TRBJ2-2*01 HLA-B*08:01 B2M MHCI RAKFKQLL BZLF1 EBV PMID:34811538 tetramer-sort yes amplicon-seq effector memory T cells healthy healthy_4 chip0423_261066 PBMC +10651 CAVVPIW TRAV12-2*01 TRAJ33*01 CASTFCWPNEHLVF TRBV7-6*01 TRBJ1-4*01 HLA-A*02:01 B2M MHCI LLAGIGTVPI PGT HomoSapiens PMID:34811538 tetramer-sort yes amplicon-seq Naive T cells healthy healthy_3 chip0423_770078 PBMC +10652 CAVRAVYGGATNKLIF TRAV3*01 TRAJ32*01 CASSPRHSTNSPLHF TRBV3-1*01 TRBJ1-6*01 HLA-B*08:01 B2M MHCI MALWMRLL INS HomoSapiens PMID:34811538 tetramer-sort yes amplicon-seq Naive T cells T1D T1D_5 chip0423_601373 PBMC +10653 CAVSDGEGAQKLVF TRAV8-6*01 TRAJ54*01 HLA-B*08:01 B2M MHCI RAKFKQLL BZLF1 EBV PMID:34811538 tetramer-sort yes amplicon-seq effector memory T cells T1D T1D_4 chip0423_316257 PBMC +10654 CAMDSSYKLIF TRAV12-3*01 TRAJ12*01 CASSSDSGNTIYF TRBV6-1*01 TRBJ1-3*01 HLA-A*02:01 B2M MHCI LLSLFSLWL ZNT8 HomoSapiens PMID:34811538 tetramer-sort yes amplicon-seq Naive T cells healthy healthy_4 chip0423_161942 PBMC +10655 CASSDLRPTSSYNEQFF TRBV19*01 TRBJ2-1*01 HLA-A*01:01 B2M MHCI CTELKLSDY NP InfluenzaA PMID:34811538 tetramer-sort yes amplicon-seq transitional T cells between effector and memory populations healthy healthy_3 chip0423_792513 PBMC +10656 CAPAANSGYSTLTF TRAV9-2*01 TRAJ11*01 CASSSGQAYEQYF TRBV7-8*01 TRBJ2-7*01 HLA-B*08:01 B2M MHCI FLRGRAYGL EBNA3A EBV PMID:34811538 tetramer-sort yes amplicon-seq effector memory T cells healthy healthy_4 chip0423_699534 PBMC +10658 CAMREAFFSGNTPLVF TRAV14/DV4*01 TRAJ29*01 CASSLSGLNTGELFF TRBV4-2*01 TRBJ2-2*01 HLA-A*02:01 B2M MHCI ELAGIGILTV MART1 HomoSapiens PMID:34811538 tetramer-sort yes amplicon-seq transitional T cells between effector and memory populations healthy healthy_3 chip0423_361201 PBMC +10661 CAVNVEGNMLTF TRAV12-2*01 TRAJ39*01 CASSRNPQSKYF TRBV28*01 TRBJ2-7*01 HLA-A*02:01 B2M MHCI TLLANVTAV VP6 RotavirusA PMID:34811538 tetramer-sort yes amplicon-seq transitional T cells between effector and memory populations T1D T1D_6 chip0423_46317 PBMC +10663 CSVVVSEPISYNEQFF TRBV29-1*01 TRBJ2-1*01 HLA-A*02:01 B2M MHCI YVLDHLIVV BRLF1 EBV PMID:34811538 tetramer-sort yes amplicon-seq effector memory T cells healthy healthy_3 chip0423_7318 PBMC +10667 CAAEDQGRSYNTDKLIF TRAV2*01 TRAJ34*01 CASSLNVGEGAGNTIYF TRBV7-6*01 TRBJ1-3*01 HLA-B*08:01 B2M MHCI RAKFKQLL BZLF1 EBV PMID:34811538 tetramer-sort yes amplicon-seq effector memory T cells healthy healthy_4 chip0423_508618 PBMC +10668 CASSEMWGAPLHF TRBV2*01 TRBJ1-6*01 HLA-A*01:01 B2M MHCI CTELKLSDY NP InfluenzaA PMID:34811538 tetramer-sort yes amplicon-seq transitional T cells between effector and memory populations healthy healthy_3 chip0423_421370 PBMC +10669 CASSWGQGPTYEQYF TRBV4-1*01 TRBJ2-7*01 HLA-B*08:01 B2M MHCI RAKFKQLL BZLF1 EBV PMID:34811538 tetramer-sort yes amplicon-seq effector T cells healthy healthy_4 chip0423_43217 PBMC +10670 CAPLCLct?GCFKTIF TRAV16*01 TRAJ9*01 CASRGDRFRGGNEQFF TRBV6-1*01 TRBJ2-1*01 HLA-B*08:01 B2M MHCI HLKRNIVV GFAP HomoSapiens PMID:34811538 tetramer-sort yes amplicon-seq Naive T cells T1D T1D_5 chip0423_500954 PBMC +10671 CAMAISNFGNEKLTF TRAV12-3*01 TRAJ48*01 HLA-A*02:01 B2M MHCI LLAGIGTVPI PGT HomoSapiens PMID:34811538 tetramer-sort yes amplicon-seq Naive T cells T1D T1D_4 chip0423_482749 PBMC +10673 CILPLAGGTSYGKLTF TRAV26-2*01 TRAJ52*01 CASSQLGGVYNEQFF TRBV7-9*01 TRBJ2-1*01 HLA-B*08:01 B2M MHCI RAKFKQLL BZLF1 EBV PMID:34811538 tetramer-sort yes amplicon-seq effector T cells T1D T1D_5 chip0423_634469 PBMC +10674 CAASDRLPGGSYIPTF TRAV13-1*01 TRAJ6*01 CSATNQYDGPDTEAFF TRBV20-1*01 TRBJ1-1*01 HLA-B*08:01 B2M MHCI RAKFKQLL BZLF1 EBV PMID:34811538 tetramer-sort yes amplicon-seq transitional T cells between effector and memory populations T1D T1D_4 chip0423_28880 PBMC +10676 CAGPHN*??cSWGKLQF TRAV27*01 TRAJ24*01 CASSDDGMNTEAFF TRBV10-2*01 TRBJ1-1*01 HLA-A*02:01 B2M MHCI CLGGLLTMV LMP2A EBV PMID:34811538 tetramer-sort yes amplicon-seq effector memory T cells healthy healthy_3 chip0423_121579 PBMC +10679 CAAYNQGGKLIF TRAV12-2*01 TRAJ23*01 HLA-A*02:01 B2M MHCI LLAGIGTVPI PGT HomoSapiens PMID:34811538 tetramer-sort yes amplicon-seq effector memory T cells healthy healthy_3 chip0423_689014 PBMC +10681 CAVAPYQLIW TRAV12-2*01 TRAJ33*01 HLA-A*02:01 B2M MHCI LLSLFSLWL ZNT8 HomoSapiens PMID:34811538 tetramer-sort yes amplicon-seq Naive T cells healthy healthy_3 chip0423_631950 PBMC +10682 CAMTLSNFGNEKLTF TRAV12-3*01 TRAJ48*01 CASAQGQGHYGYTF TRBV4-1*01 TRBJ1-2*01 HLA-A*02:01 B2M MHCI LLAGIGTVPI PGT HomoSapiens PMID:34811538 tetramer-sort yes amplicon-seq Naive T cells T1D T1D_6 chip0423_541238 PBMC +10683 CAVPGGGLGLLLL TRAV8-3*01 TRAJ42*01 CASSYSSTGEYF TRBV6-2*01,TRBV6-3*01 TRBJ2-7*01 HLA-A*02:01 B2M MHCI YLLEMLWRL LMP1 EBV PMID:34811538 tetramer-sort yes amplicon-seq central memory T cells T1D T1D_4 chip0423_461923 PBMC +10684 CAAQETSYDKVIF TRAV13-1*01 TRAJ50*01 HLA-B*08:01 B2M MHCI RAKFKQLL BZLF1 EBV PMID:34811538 tetramer-sort yes amplicon-seq effector memory T cells T1D T1D_5 chip0423_761778 PBMC +10685 CASTFRGQEYNEQFF TRBV28*01 TRBJ2-1*01 HLA-A*01:01 B2M MHCI VTDAAHLLI ZNT8 HomoSapiens PMID:34811538 tetramer-sort yes amplicon-seq Naive T cells T1D T1D_4 chip0423_600052 PBMC +10686 CAVEDQGRSYNTDKLIF TRAV2*01 TRAJ34*01 HLA-B*08:01 B2M MHCI RAKFKQLL BZLF1 EBV PMID:34811538 tetramer-sort yes amplicon-seq effector memory T cells healthy healthy_4 chip0423_96852 PBMC +10687 CAGPPGYTGKLIL TRAV27*01 TRAJ37*01 HLA-A*02:01 B2M MHCI GILGFVFTL M1 InfluenzaA PMID:34811538 tetramer-sort yes amplicon-seq transitional T cells between effector and memory populations T1D T1D_6 chip0423_68822 PBMC +10688 CIVREGGGADGLTF TRAV26-1*01 TRAJ45*01 HLA-B*08:01 B2M MHCI RAKFKQLL BZLF1 EBV PMID:34811538 tetramer-sort yes amplicon-seq effector T cells T1D T1D_4 chip0423_594260 PBMC +10690 CASSLGQAYEQYF TRBV7-8*01 TRBJ2-7*01 HLA-B*08:01 B2M MHCI FLRGRAYGL EBNA3A EBV PMID:34811538 tetramer-sort yes amplicon-seq central memory T cells T1D T1D_6 chip0423_782667 PBMC +10691 CAMSLSNFGNEKLTL TRAV12-3*01 TRAJ48*01 HLA-A*02:01 B2M MHCI LLAGIGTVPI PGT HomoSapiens PMID:34811538 tetramer-sort yes amplicon-seq Naive T cells T1D T1D_4 chip0423_232643 PBMC +10692 CATSDSGTGVHEQYF TRBV24-1*01 TRBJ2-7*01 HLA-A*02:01 B2M MHCI LLAGIGTVPI PGT HomoSapiens PMID:34811538 tetramer-sort yes amplicon-seq Naive T cells healthy healthy_3 chip0423_570764 PBMC +10693 CASSSRASYEQYF TRBV19*01 TRBJ2-7*01 HLA-A*02:01 B2M MHCI GILGFVFTL M1 InfluenzaA PMID:34811538 tetramer-sort yes amplicon-seq transitional T cells between effector and memory populations healthy healthy_3 chip0423_179993 PBMC +10694 CAHGGSQGNLIF TRAV24*01 TRAJ42*01 HLA-A*01:01 B2M MHCI ALDIEIATY GFAP HomoSapiens PMID:34811538 tetramer-sort yes amplicon-seq Naive T cells T1D T1D_5 chip0423_654835 PBMC +10695 CAGASGTYKYIF TRAV27*01 TRAJ40*01 CASSETGGTLSPLHF TRBV7-8*01 TRBJ1-6*01 HLA-A*02:01 B2M MHCI GILGFVFTL M1 InfluenzaA PMID:34811538 tetramer-sort yes amplicon-seq central memory T cells healthy healthy_4 chip0423_438789 PBMC +10697 CAVEDQGRSYNTDKLIF TRAV2*01 TRAJ34*01 HLA-B*08:01 B2M MHCI RAKFKQLL BZLF1 EBV PMID:34811538 tetramer-sort yes amplicon-seq effector memory T cells healthy healthy_4 chip0423_543355 PBMC +10698 CASSIRSGQAYTEAFF TRBV19*01 TRBJ1-1*01 HLA-A*02:01 B2M MHCI GILGFVFTL M1 InfluenzaA PMID:34811538 tetramer-sort yes amplicon-seq transitional T cells between effector and memory populations T1D T1D_6 chip0423_754578 PBMC +10699 CTGGGSSNTGKLIF TRAV27*01 TRAJ37*01 CASSTRSAYEQYL TRBV19*01 TRBJ2-7*01 HLA-A*02:01 B2M MHCI GILGFVFTL M1 InfluenzaA PMID:34811538 tetramer-sort yes amplicon-seq transitional T cells between effector and memory populations healthy healthy_3 chip0423_595919 PBMC +10701 CSVGAGGTNEKLFF TRBV29-1*01 TRBJ1-4*01 HLA-A*02:01 B2M MHCI GLCTLVAML BLMF1 EBV PMID:34811538 tetramer-sort yes amplicon-seq effector T cells healthy healthy_4 chip0423_430772 PBMC +10702 CAVRGLYF TRAV12-2*01 TRAJ21*01 CASSLAVGEGPQHF TRBV7-9*01 TRBJ1-5*01 HLA-B*08:01 B2M MHCI RAKFKQLL BZLF1 EBV PMID:34811538 tetramer-sort yes amplicon-seq effector T cells T1D T1D_4 chip0423_806003 PBMC +10703 CAEMETSYDKVIF TRAV5*01 TRAJ50*01 CASTHPQDVNTGELFF TRBV7-9*01 TRBJ2-2*01 HLA-B*08:01 B2M MHCI RAKFKQLL BZLF1 EBV PMID:34811538 tetramer-sort yes amplicon-seq effector T cells T1D T1D_5 chip0423_543550 PBMC +10704 CASNIRAGGSYEQYF TRBV28*01 TRBJ2-7*01 HLA-A*02:01 B2M MHCI YLLEMLWRL LMP1 EBV PMID:34811538 tetramer-sort yes amplicon-seq central memory T cells T1D T1D_4 chip0423_30905 PBMC +10706 CASAPQARLAGIYEQYF TRBV27*01 TRBJ2-7*01 HLA-B*08:01 B2M MHCI YAYAKWKL ZNT8 HomoSapiens PMID:34811538 tetramer-sort yes amplicon-seq Naive T cells T1D T1D_5 chip0423_589548 PBMC +10708 CAMRETNSGYSTLTF TRAV14/DV4*01 TRAJ11*01 HLA-A*02:01 B2M MHCI CLGGLLTMV LMP2A EBV PMID:34811538 tetramer-sort yes amplicon-seq Naive T cells T1D T1D_6 chip0423_644017 PBMC +10710 CAMSKSNFGNEKLTF TRAV12-3*01 TRAJ48*01 CASSLAGgg?GD**YAVF TRBV5-6*01 TRBJ2-3*01 HLA-A*02:01 B2M MHCI LLAGIGTVPI PGT HomoSapiens PMID:34811538 tetramer-sort yes amplicon-seq effector memory T cells healthy healthy_3 chip0423_801322 PBMC +10712 CAVNRFLADRGSTLGRLYF TRAV12-2*01 TRAJ18*01 CASSQEVTDTQYF TRBV4-3*01 TRBJ2-3*01 HLA-A*02:01 B2M MHCI YLLEMLWRL LMP1 EBV PMID:34811538 tetramer-sort yes amplicon-seq transitional T cells between effector and memory populations T1D T1D_4 chip0423_828868 PBMC +10713 CASRQVTTPGDGYTF TRBV14*01 TRBJ1-2*01 HLA-B*08:01 B2M MHCI QAKWRLQTL EBNA3A EBV PMID:34811538 tetramer-sort yes amplicon-seq effector T cells T1D T1D_4 chip0423_25770 PBMC +10716 CASSFTSSGGVEQFF TRBV7-9*01 TRBJ2-1*01 HLA-B*08:01 B2M MHCI RAKFKQLL BZLF1 EBV PMID:34811538 tetramer-sort yes amplicon-seq effector memory T cells T1D T1D_5 chip0423_530076 PBMC +10718 CASSSGQAYEQYF TRBV7-8*01 TRBJ2-7*01 HLA-B*08:01 B2M MHCI FLRGRAYGL EBNA3A EBV PMID:34811538 tetramer-sort yes amplicon-seq effector memory T cells healthy healthy_4 chip0423_279830 PBMC +10719 CAAPLQS??tAGNTLTF TRAV13-1*01 TRAJ17*01 CASSPGETRGEQYF TRBV5-6*01 TRBJ2-7*01 HLA-A*02:01 B2M MHCI YLLEMLWRL LMP1 EBV PMID:34811538 tetramer-sort yes amplicon-seq central memory T cells T1D T1D_4 chip0423_759201 PBMC +10720 CASSLAVGASPQHL TRBV7-9*01 TRBJ1-5*01 HLA-B*08:01 B2M MHCI RAKFKQLL BZLF1 EBV PMID:34811538 tetramer-sort yes amplicon-seq effector memory T cells T1D T1D_4 chip0423_320033 PBMC +10722 CVVNNF??cNTDMRF TRAV12-1*01 TRAJ43*01 CSATGTGDYGYTF TRBV20-1*01 TRBJ1-2*01 HLA-A*02:01 B2M MHCI YVLDHLIVV BRLF1 EBV PMID:34811538 tetramer-sort yes amplicon-seq effector memory T cells healthy healthy_4 chip0423_709994 PBMC +10723 CASREEDGPQHF TRBV9*01 TRBJ1-5*01 HLA-A*01:01 B2M MHCI CTELKLSDY NP InfluenzaA PMID:34811538 tetramer-sort yes amplicon-seq effector T cells healthy healthy_3 chip0423_644728 PBMC +10725 CALLPGGGNKLTF TRAV19*01 TRAJ10*01 HLA-A*01:01 B2M MHCI VTDAAHLLI ZNT8 HomoSapiens PMID:34811538 tetramer-sort yes amplicon-seq central memory T cells healthy healthy_3 chip0423_495158 PBMC +10726 CSARDETGNGYTF TRBV20-1*01 TRBJ1-2*01 HLA-A*02:01 B2M MHCI GLCTLVAML BLMF1 EBV PMID:34811538 tetramer-sort yes amplicon-seq effector T cells healthy healthy_4 chip0423_303287 PBMC +10728 CAVGENYGQNFVF TRAV21*01 TRAJ26*01 CASSQGFRTPEGGYTF TRBV3-1*01 TRBJ1-2*01 HLA-A*01:01 B2M MHCI CTELKLSDY NP InfluenzaA PMID:34811538 tetramer-sort yes amplicon-seq effector T cells healthy healthy_3 chip0423_430406 PBMC +10729 CIVREGGGADGLPF TRAV26-1*01 TRAJ45*01 CASSLAVGEGPQHF TRBV7-9*01 TRBJ1-5*01 HLA-B*08:01 B2M MHCI RAKFKQLL BZLF1 EBV PMID:34811538 tetramer-sort yes amplicon-seq effector T cells T1D T1D_4 chip0423_15088 PBMC +10731 CASSRREGQAEKWEQFF TRBV3-1*01 TRBJ2-1*01 HLA-A*01:01 B2M MHCI LVSDGGPNLY PB1 InfluenzaA PMID:34811538 tetramer-sort yes amplicon-seq transitional T cells between effector and memory populations healthy healthy_3 chip0423_152661 PBMC +10732 CASRVGREPTGELFF TRBV3-1*01 TRBJ2-2*01 HLA-B*08:01 B2M MHCI RAKFKQLL BZLF1 EBV PMID:34811538 tetramer-sort yes amplicon-seq effector T cells healthy healthy_4 chip0423_859574 PBMC +10733 CARPRDRGITEQFF TRBV6-2*01,TRBV6-3*01 TRBJ2-1*01 HLA-A*01:01 B2M MHCI VTDAAHLLI ZNT8 HomoSapiens PMID:34811538 tetramer-sort yes amplicon-seq effector memory T cells healthy healthy_3 chip0423_129458 PBMC +10734 CARPPGYKYIF TRAV9-2*01 TRAJ40*01 CASSLARTEAFF TRBV7-2*01 TRBJ1-1*01 HLA-B*08:01 B2M MHCI RAKFKQLL BZLF1 EBV PMID:34811538 tetramer-sort yes amplicon-seq effector memory T cells T1D T1D_5 chip0423_116285 PBMC +10736 CALSSNDYKLSF TRAV19*01 TRAJ20*01 HLA-A*01:01 B2M MHCI HSNLNDATY NP InfluenzaA PMID:34811538 tetramer-sort yes amplicon-seq Naive T cells T1D T1D_6 chip0423_234161 PBMC +10737 CALSDGVPQPQHF TRBV10-3*01 TRBJ1-5*01 HLA-A*01:01 B2M MHCI HSNLNDATY NP InfluenzaA PMID:34811538 tetramer-sort yes amplicon-seq Naive T cells T1D T1D_5 chip0423_537986 PBMC +10738 CASSSGQAYKQYF TRBV7-8*01 TRBJ2-7*01 HLA-B*08:01 B2M MHCI FLRGRAYGL EBNA3A EBV PMID:34811538 tetramer-sort yes amplicon-seq effector memory T cells healthy healthy_4 chip0423_296864 PBMC +10739 CAV*GQcg??ttAGISSF TRAV1-2*01 TRAJ27*01 CASRSSQGGITGELFF TRBV12-3*01,TRBV12-4*01 TRBJ2-2*01 HLA-A*01:01 B2M MHCI VTDAAHLLI ZNT8 HomoSapiens PMID:34811538 tetramer-sort yes amplicon-seq Naive T cells healthy healthy_3 chip0423_201480 PBMC +10740 CASSEGTATNEKLFF TRBV3-1*01 TRBJ1-4*01 HLA-A*02:01 B2M MHCI FLFAVGFYL IGRP HomoSapiens PMID:34811538 tetramer-sort yes amplicon-seq Naive T cells T1D T1D_4 chip0423_10579 PBMC +10741 CILPLAGGTSYGKLTF TRAV26-2*01 TRAJ52*01 CASSSGQAYEQYL TRBV7-8*01 TRBJ2-7*01 HLA-B*08:01 B2M MHCI FLRGRAYGL EBNA3A EBV PMID:34811538 tetramer-sort yes amplicon-seq effector memory T cells healthy healthy_4 chip0423_700988 PBMC +10742 CAMREGEAGGFKTIF TRAV14/DV4*01 TRAJ9*01 CASSLFQASSLYGYTF TRBV7-8*01 TRBJ1-2*01 HLA-B*08:01 B2M MHCI RAKFKQLL BZLF1 EBV PMID:34811538 tetramer-sort yes amplicon-seq effector T cells T1D T1D_5 chip0423_87351 PBMC +10743 CAMSISNFGNEKLTF TRAV12-3*01 TRAJ48*01 CASSLAGGPGNTIYF TRBV7-8*01 TRBJ1-3*01 HLA-A*02:01 B2M MHCI LLAGIGTVPI PGT HomoSapiens PMID:34811538 tetramer-sort yes amplicon-seq Naive T cells T1D T1D_4 chip0423_373612 PBMC +10744 CAVWRDGAYEQYF TRBV28*01 TRBJ2-7*01 HLA-A*02:01 B2M MHCI YLLEMLWRL LMP1 EBV PMID:34811538 tetramer-sort yes amplicon-seq central memory T cells T1D T1D_4 chip0423_214256 PBMC +10747 CSVVGSTEAFF TRBV29-1*01 TRBJ1-1*01 HLA-B*08:01 B2M MHCI NLIFKWIL G6PC2 HomoSapiens PMID:34811538 tetramer-sort yes amplicon-seq Naive T cells healthy healthy_4 chip0423_805586 PBMC +10748 CAVSYHASGGSYIPTF TRAV1-2*01 TRAJ6*01 CASSQDGYPAGEAADT*YF TRBV4-1*01 TRBJ2-3*01 HLA-A*01:01 B2M MHCI CTELKLSDY NP InfluenzaA PMID:34811538 tetramer-sort yes amplicon-seq transitional T cells between effector and memory populations healthy healthy_3 chip0423_481501 PBMC +10750 CASSQTFPNTGELFF TRBV3-1*01 TRBJ2-2*01 HLA-B*08:01 B2M MHCI RAKFKQLL BZLF1 EBV PMID:34811538 tetramer-sort yes amplicon-seq effector T cells healthy healthy_4 chip0423_882116 PBMC +10751 CAATETSYDKVIF TRAV13-1*01 TRAJ50*01 CASSLLGVRDKENEQYF TRBV11-1*01 TRBJ2-7*01 HLA-B*08:01 B2M MHCI RAKFKQLL BZLF1 EBV PMID:34811538 tetramer-sort yes amplicon-seq effector memory T cells T1D T1D_5 chip0423_264431 PBMC +10752 CASSRLAGGVETQYF TRBV28*01 TRBJ2-5*01 HLA-A*02:01 B2M MHCI LLAGIGTVPI PGT HomoSapiens PMID:34811538 tetramer-sort yes amplicon-seq Naive T cells healthy healthy_3 chip0423_18096 PBMC +10753 CNVKVWgg??gtVYWLVY TRAV8-4*01,TRAV8-2*01 TRAJ16*01 CASSLGPAYEQYF TRBV7-8*01 TRBJ2-7*01 HLA-B*08:01 B2M MHCI FLRGRAYGL EBNA3A EBV PMID:34811538 tetramer-sort yes amplicon-seq effector memory T cells T1D T1D_6 chip0423_572610 PBMC +10754 CSVAQGSFGYTF TRBV29-1*01 TRBJ1-2*01 HLA-B*08:01 B2M MHCI RAKFKQLL BZLF1 EBV PMID:34811538 tetramer-sort yes amplicon-seq effector memory T cells T1D T1D_5 chip0423_99578 PBMC +10755 CAAS*SSga??acRDDRIIF TRAV13-1*01 TRAJ30*01 CASSPPTSGGVGIDTQYF TRBV11-3*01 TRBJ2-3*01 HLA-A*02:01 B2M MHCI LLSLFSLWL ZNT8 HomoSapiens PMID:34811538 tetramer-sort yes amplicon-seq transitional T cells between effector and memory populations healthy healthy_3 chip0423_583149 PBMC +10757 CIVSAGGGADGLTC TRAV26-1*01 TRAJ45*01 CASSLAVGEGPQHF TRBV7-9*01 TRBJ1-5*01 HLA-B*08:01 B2M MHCI RAKFKQLL BZLF1 EBV PMID:34811538 tetramer-sort yes amplicon-seq effector memory T cells T1D T1D_4 chip0423_670215 PBMC +10758 CAVGFLYTGFLTLVF TRAV8-3*01 TRAJ8*01 HLA-A*01:01 B2M MHCI LTSLTILQLY G6PC2 HomoSapiens PMID:34811538 tetramer-sort yes amplicon-seq Naive T cells T1D T1D_5 chip0423_535414 PBMC +10759 CASSSGQAYEQYF TRBV7-8*01 TRBJ2-7*01 HLA-B*08:01 B2M MHCI FLRGRAYGL EBNA3A EBV PMID:34811538 tetramer-sort yes amplicon-seq effector T cells healthy healthy_4 chip0423_355660 PBMC +10760 CAMSATSGTYKYIF TRAV12-3*01 TRAJ40*01 CASSSLGPPGELFF TRBV5-4*01 TRBJ2-2*01 HLA-A*01:01 B2M MHCI GSHLVEALY INS HomoSapiens PMID:34811538 tetramer-sort yes amplicon-seq Naive T cells T1D T1D_5 chip0423_497922 PBMC +10762 CAVRGYGGSQGNLIF TRAV41*01 TRAJ42*01 HLA-A*02:01 B2M MHCI LLFNILGGWV NS4B HCV PMID:34811538 tetramer-sort yes amplicon-seq Naive T cells healthy healthy_3 chip0423_672014 PBMC +10764 CARSEGAAGGFTPIF TRAV14/DV4*01 TRAJ9*01 CASSYSSGNTEAFF TRBV6-5*01 TRBJ1-1*01 HLA-A*02:01 B2M MHCI CLGGLLTMV LMP2A EBV PMID:34811538 tetramer-sort yes amplicon-seq Naive T cells T1D T1D_6 chip0423_518186 PBMC +10765 CASSSGQAYEQYF TRBV7-8*01 TRBJ2-7*01 HLA-B*08:01 B2M MHCI FLRGRAYGL EBNA3A EBV PMID:34811538 tetramer-sort yes amplicon-seq effector T cells healthy healthy_4 chip0423_573542 PBMC +10766 CAASETSYDKVIF TRAV13-1*01 TRAJ50*01 CASSLVGGTEAFF TRBV6-1*01 TRBJ1-1*01 HLA-B*08:01 B2M MHCI ILKGKFQTA NP InfluenzaA PMID:34811538 tetramer-sort yes amplicon-seq Naive T cells T1D T1D_6 chip0423_513590 PBMC +10768 CAVDTIDRGSTLGRLYF TRAV39*01 TRAJ18*01 HLA-A*02:01 B2M MHCI GILGFVFTL M1 InfluenzaA PMID:34811538 tetramer-sort yes amplicon-seq effector T cells healthy healthy_3 chip0423_227486 PBMC +10770 CALRRGLct?VRWGALQF TRAV9-2*01 TRAJ24*01 HLA-A*02:01 B2M MHCI SLISGMWLL VP2 RotavirusA PMID:34811538 tetramer-sort yes amplicon-seq Naive T cells healthy healthy_3 chip0423_302102 PBMC +10772 CASSGPHANYGYTF TRBV9*01 TRBJ1-2*01 HLA-A*01:01 B2M MHCI CTELKLSDY NP InfluenzaA PMID:34811538 tetramer-sort yes amplicon-seq effector memory T cells healthy healthy_3 chip0423_95446 PBMC +10773 CALSEGNTDKLIF TRAV19*01 TRAJ34*01 HLA-A*01:01 B2M MHCI CTELKLSDY NP InfluenzaA PMID:34811538 tetramer-sort yes amplicon-seq transitional T cells between effector and memory populations healthy healthy_3 chip0423_855671 PBMC +10774 CAVNSGNTPLVF TRAV1-2*01 TRAJ29*01 HLA-B*08:01 B2M MHCI QAKWRLQTL EBNA3A EBV PMID:34811538 tetramer-sort yes amplicon-seq effector T cells T1D T1D_4 chip0423_717780 PBMC +10775 CALSSYSGGYQKVTF TRAV19*01 TRAJ13*01 HLA-A*01:01 B2M MHCI CTELKLSDY NP InfluenzaA PMID:34811538 tetramer-sort yes amplicon-seq transitional T cells between effector and memory populations healthy healthy_3 chip0423_391143 PBMC +10779 CATSISNFGNEKLTF TRAV12-3*01 TRAJ48*01 HLA-A*02:01 B2M MHCI LLAGIGTVPI PGT HomoSapiens PMID:34811538 tetramer-sort yes amplicon-seq Naive T cells T1D T1D_4 chip0423_769997 PBMC +10780 CASSGGGPYEQYF TRBV6-1*01 TRBJ2-7*01 HLA-A*02:01 B2M MHCI LAVDGVLSV ZNT8 HomoSapiens PMID:34811538 tetramer-sort yes amplicon-seq Naive T cells healthy healthy_4 chip0423_340592 PBMC +10783 CASRAAGWFF TRBV6-2*01,TRBV6-3*01 TRBJ2-1*01 HLA-B*08:01 B2M MHCI NLIFKWIL G6PC2 HomoSapiens PMID:34811538 tetramer-sort yes amplicon-seq Naive T cells T1D T1D_5 chip0423_125649 PBMC +10784 CAPAGRA??cSGSRLTF TRAV17*01 TRAJ10*01 CACGLRLct??acPHHGQFF TRBV27*01 TRBJ2-1*01 HLA-A*02:01 B2M MHCI GILGFVFTL M1 InfluenzaA PMID:34811538 tetramer-sort yes amplicon-seq effector T cells healthy healthy_3 chip0423_64277 PBMC +10785 FAPVGGWRTLQF TRAV17*01 TRAJ24*01 CSASASQWTEETQYF TRBV20-1*01 TRBJ2-5*01 HLA-A*02:01 B2M MHCI VMNILLQYV GAD65 HomoSapiens PMID:34811538 tetramer-sort yes amplicon-seq effector memory T cells healthy healthy_3 chip0423_669100 PBMC +10787 CARSGSGSARPLTF TRAV36/DV7*01 TRAJ22*01 CASIGKTTSTDTQYF TRBV19*01 TRBJ2-3*01 HLA-A*01:01 B2M MHCI CTELKLSDY NP InfluenzaA PMID:34811538 tetramer-sort yes amplicon-seq transitional T cells between effector and memory populations healthy healthy_3 chip0423_135777 PBMC +10788 CSLYPGFGACQGTLIS TRAV16*01 TRAJ42*01 CASSHTQDIPNYGYTF TRBV12-3*01,TRBV12-4*01 TRBJ1-2*01 HLA-B*08:01 B2M MHCI RAKFKQLL BZLF1 EBV PMID:34811538 tetramer-sort yes amplicon-seq effector T cells T1D T1D_5 chip0423_316138 PBMC +10789 CASSLLGGNNSPLHF TRBV7-9*01 TRBJ1-6*01 HLA-B*08:01 B2M MHCI RAKFKQLL BZLF1 EBV PMID:34811538 tetramer-sort yes amplicon-seq effector memory T cells T1D T1D_5 chip0423_471404 PBMC +10792 CARRYTSc?cGPEWLFF TRBV6-2*01,TRBV6-3*01 TRBJ1-1*01 HLA-B*08:01 B2M MHCI RAKFKQLL BZLF1 EBV PMID:34811538 tetramer-sort yes amplicon-seq effector memory T cells healthy healthy_4 chip0423_415869 PBMC +10796 CARSPAR??cRGKGYTF TRBV7-8*01 TRBJ1-2*01 HLA-A*02:01 B2M MHCI YVLDHLIVV BRLF1 EBV PMID:34811538 tetramer-sort yes amplicon-seq effector memory T cells healthy healthy_3 chip0423_493026 PBMC +10798 CSARDETGNGYTF TRBV20-1*01 TRBJ1-2*01 HLA-A*02:01 B2M MHCI GLCTLVAML BLMF1 EBV PMID:34811538 tetramer-sort yes amplicon-seq effector memory T cells healthy healthy_4 chip0423_316408 PBMC +10799 CASSLEAFGPSPLHF TRBV5-4*01 TRBJ1-6*01 HLA-A*01:01 B2M MHCI PTEKGANEY ZNT8 HomoSapiens PMID:34811538 tetramer-sort yes amplicon-seq Naive T cells T1D T1D_6 chip0423_834451 PBMC +10800 CATVMPTDSWGKLQF TRAV17*01 TRAJ24*01 CAWSVGTGELFF TRBV30*01 TRBJ2-2*01 HLA-A*02:01 B2M MHCI LLAGIGTVPI PGT HomoSapiens PMID:34811538 tetramer-sort yes amplicon-seq Naive T cells T1D T1D_6 chip0423_541093 PBMC +10802 CAFMKLTYNNNDMRF TRAV38-1*01 TRAJ43*01 CSADGYRGPYGYTF TRBV20-1*01 TRBJ1-2*01 HLA-A*01:01 B2M MHCI CTELKLSDY NP InfluenzaA PMID:34811538 tetramer-sort yes amplicon-seq transitional T cells between effector and memory populations healthy healthy_3 chip0423_51449 PBMC +10803 CASRPDWDSSNTGELFF TRBV11-2*01 TRBJ2-2*01 HLA-A*02:01 B2M MHCI LLAGIGTVPI PGT HomoSapiens PMID:34811538 tetramer-sort yes amplicon-seq Naive T cells T1D T1D_6 chip0423_24791 PBMC +10805 CASSQTFPNTGELFF TRBV3-1*01 TRBJ2-2*01 HLA-B*08:01 B2M MHCI RAKFKQLL BZLF1 EBV PMID:34811538 tetramer-sort yes amplicon-seq effector T cells healthy healthy_4 chip0423_5589 PBMC +10806 CSAQSRSTGRNTGELFF TRBV20-1*01 TRBJ2-2*01 HLA-B*08:01 B2M MHCI ELRSRYWAI NP InfluenzaA PMID:34811538 tetramer-sort yes amplicon-seq transitional T cells between effector and memory populations healthy healthy_5 chip0423_614113 PBMC +10807 CSATRPGNIQYF TRBV29-1*01 TRBJ2-4*01 HLA-B*08:01 B2M MHCI RAKFKQLL BZLF1 EBV PMID:34811538 tetramer-sort yes amplicon-seq effector memory T cells T1D T1D_4 chip0423_476435 PBMC +10808 CASCRGGTYEQYF TRBV10-3*01 TRBJ2-7*01 HLA-A*01:01 B2M MHCI CTELKLSDY NP InfluenzaA PMID:34811538 tetramer-sort yes amplicon-seq transitional T cells between effector and memory populations healthy healthy_3 chip0423_449242 PBMC +10809 CADYSSASKIIF TRAV1-1*01 TRAJ3*01 HLA-A*01:01 B2M MHCI CTELKLSDY NP InfluenzaA PMID:34811538 tetramer-sort yes amplicon-seq effector T cells healthy healthy_3 chip0423_368981 PBMC +10810 CASSLLGVASYEQYF TRBV7-9*01 TRBJ2-7*01 HLA-B*08:01 B2M MHCI RAKFKQLL BZLF1 EBV PMID:34811538 tetramer-sort yes amplicon-seq effector memory T cells T1D T1D_5 chip0423_134285 PBMC +10812 CAPPTEPFtg??ggAGRYHLTF TRAV14/DV4*01 TRAJ28*01 CASSPLGSNEKLFF TRBV7-9*01 TRBJ1-4*01 HLA-B*08:01 B2M MHCI RAKFKQLL BZLF1 EBV PMID:34811538 tetramer-sort yes amplicon-seq effector memory T cells T1D T1D_5 chip0423_49369 PBMC +10813 RASRPGAAYGYTF TRBV14*01 TRBJ1-2*01 HLA-B*08:01 B2M MHCI YLKDQQLL gp160 HIV-1 PMID:34811538 tetramer-sort yes amplicon-seq Naive T cells healthy healthy_5 chip0423_795787 PBMC +10815 CASSSEVGVSYEQYF TRBV7-6*01 TRBJ2-7*01 HLA-B*08:01 B2M MHCI RAKFKQLL BZLF1 EBV PMID:34811538 tetramer-sort yes amplicon-seq Naive T cells healthy healthy_5 chip0423_557488 PBMC +10816 CAMANSGGSNYKLTF TRAV12-3*01 TRAJ53*01 CSVGSGDYEQYF TRBV29-1*01 TRBJ2-7*01 HLA-B*08:01 B2M MHCI RAKFKQLL BZLF1 EBV PMID:34811538 tetramer-sort yes amplicon-seq effector T cells healthy healthy_4 chip0423_450420 PBMC +10817 CAASRVLg?cNTGKLIF TRAV23/DV6*01 TRAJ37*01 CASSTTRAGTWPLHF TRBV7-9*01 TRBJ1-6*01 HLA-B*08:01 B2M MHCI RAKFKQLL BZLF1 EBV PMID:34811538 tetramer-sort yes amplicon-seq effector memory T cells healthy healthy_4 chip0423_445680 PBMC +10818 CSARRRWESTDTQYF TRBV20-1*01 TRBJ2-3*01 HLA-A*01:01 B2M MHCI HSNLNDATY NP InfluenzaA PMID:34811538 tetramer-sort yes amplicon-seq transitional T cells between effector and memory populations T1D T1D_5 chip0423_248224 PBMC +10819 CARRGSGSARPLTF TRAV36/DV7*01 TRAJ22*01 CASIGKTTSTDTQYF TRBV19*01 TRBJ2-3*01 HLA-A*01:01 B2M MHCI CTELKLSDY NP InfluenzaA PMID:34811538 tetramer-sort yes amplicon-seq transitional T cells between effector and memory populations healthy healthy_3 chip0423_628779 PBMC +10820 CASSQDLRGEQYF TRBV4-2*01 TRBJ2-7*01 HLA-B*08:01 B2M MHCI CPLSKILL LMP2A EBV PMID:34811538 tetramer-sort yes amplicon-seq effector T cells healthy healthy_5 chip0423_584435 PBMC +10824 CAVNGFSGGYNKLIF TRAV8-1*01 TRAJ4*01 CASSPGETRGEQYF TRBV5-6*01 TRBJ2-7*01 HLA-A*02:01 B2M MHCI YLLEMLWRL LMP1 EBV PMID:34811538 tetramer-sort yes amplicon-seq transitional T cells between effector and memory populations T1D T1D_4 chip0423_473397 PBMC +10826 CASSLLAGPYEQYF TRBV27*01 TRBJ2-7*01 HLA-A*02:01 B2M MHCI LLAGIGTVPI PGT HomoSapiens PMID:34811538 tetramer-sort yes amplicon-seq Naive T cells healthy healthy_3 chip0423_518915 PBMC +10828 CASSSLGQKNTEASF TRBV7-9*01 TRBJ1-1*01 HLA-B*08:01 B2M MHCI RAKFKQLL BZLF1 EBV PMID:34811538 tetramer-sort yes amplicon-seq effector memory T cells T1D T1D_5 chip0423_349695 PBMC +10829 CASLPTPHSDSGNSNTEAFF TRBV5-1*01 TRBJ1-1*01 HLA-B*08:01 B2M MHCI RAKFKQLL BZLF1 EBV PMID:34811538 tetramer-sort yes amplicon-seq effector T cells T1D T1D_4 chip0423_108240 PBMC +10830 CASRVGREPTGELFF TRBV3-1*01 TRBJ2-2*01 HLA-B*08:01 B2M MHCI RAKFKQLL BZLF1 EBV PMID:34811538 tetramer-sort yes amplicon-seq effector T cells healthy healthy_4 chip0423_849780 PBMC +10832 CAVGSPNYGGSQGNLIF TRAV21*01 TRAJ42*01 HLA-A*01:01 B2M MHCI CTELKLSDY NP InfluenzaA PMID:34811538 tetramer-sort yes amplicon-seq transitional T cells between effector and memory populations healthy healthy_3 chip0423_88632 PBMC +10833 CAASNNFGNEKLTF TRAV23/DV6*01 TRAJ48*01 YASQLAGGTGELFF TRBV24-1*01 TRBJ2-2*01 HLA-B*08:01 B2M MHCI RAKFKQLL BZLF1 EBV PMID:34811538 tetramer-sort yes amplicon-seq effector T cells T1D T1D_5 chip0423_811171 PBMC +10834 CAVPGANSKLTF TRAV21*01 TRAJ56*01 HLA-A*01:01 B2M MHCI ALDIEIATY GFAP HomoSapiens PMID:34811538 tetramer-sort yes amplicon-seq Naive T cells healthy healthy_3 chip0423_417253 PBMC +10836 CAYFLGDDKIIF TRAV38-1*01 TRAJ30*01 HLA-A*02:01 B2M MHCI ALGIGILTV MART1 HomoSapiens PMID:34811538 tetramer-sort yes amplicon-seq Naive T cells healthy healthy_3 chip0423_289239 PBMC +10837 CASRGGSNYKLTF TRAV16*01,TRAV14/DV4*01 TRAJ53*01 HLA-A*01:01 B2M MHCI CTELKLSDY NP InfluenzaA PMID:34811538 tetramer-sort yes amplicon-seq transitional T cells between effector and memory populations healthy healthy_3 chip0423_625705 PBMC +10838 CASSLAVGEGPQHF TRBV7-9*01 TRBJ1-5*01 HLA-B*08:01 B2M MHCI RAKFKQLL BZLF1 EBV PMID:34811538 tetramer-sort yes amplicon-seq effector T cells T1D T1D_4 chip0423_20064 PBMC +10841 CASSDDGMNTEAFF TRBV10-2*01 TRBJ1-1*01 HLA-A*02:01 B2M MHCI CLGGLLTMV LMP2A EBV PMID:34811538 tetramer-sort yes amplicon-seq central memory T cells healthy healthy_3 chip0423_770990 PBMC +10842 CIVREGGGADGLTF TRAV26-1*01 TRAJ45*01 CASSLAVGEGPQHF TRBV7-9*01 TRBJ1-5*01 HLA-B*08:01 B2M MHCI RAKFKQLL BZLF1 EBV PMID:34811538 tetramer-sort yes amplicon-seq effector memory T cells T1D T1D_4 chip0423_698340 PBMC +10843 CAAMETSYDKVIF TRAV13-1*01 TRAJ50*01 HLA-B*08:01 B2M MHCI RAKFKQLL BZLF1 EBV PMID:34811538 tetramer-sort yes amplicon-seq effector memory T cells T1D T1D_5 chip0423_628395 PBMC +10844 CASTLQGKETQYF TRBV6-2*01,TRBV6-3*01 TRBJ2-5*01 HLA-A*02:01 B2M MHCI YVLDHLIVV BRLF1 EBV PMID:34811538 tetramer-sort yes amplicon-seq effector memory T cells healthy healthy_4 chip0423_593494 PBMC +10845 CALNQGGKLIF TRAV12-1*01 TRAJ23*01 CASTGFGTGELFF TRBV28*01 TRBJ2-2*01 HLA-A*02:01 B2M MHCI LLAGIGTVPI PGT HomoSapiens PMID:34811538 tetramer-sort yes amplicon-seq Naive T cells healthy healthy_3 chip0423_860751 PBMC +10846 CALSHRGAAGHPLTF TRAV9-2*01 TRAJ17*01 HLA-A*02:01 B2M MHCI FMYSDFHFI PA InfluenzaA PMID:34811538 tetramer-sort yes amplicon-seq Naive T cells T1D T1D_6 chip0423_515063 PBMC +10848 CALDQTGANNLFF TRAV16*01 TRAJ36*01 CASSLSTGGLREQYF TRBV5-4*01 TRBJ2-7*01 HLA-A*01:01 B2M MHCI HSNLNDATY NP InfluenzaA PMID:34811538 tetramer-sort yes amplicon-seq Naive T cells healthy healthy_5 chip0423_794156 PBMC +10849 CAMSGDYKLSF TRAV12-3*01 TRAJ20*01 HLA-A*02:01 B2M MHCI LLAGIGTVPI PGT HomoSapiens PMID:34811538 tetramer-sort yes amplicon-seq Naive T cells T1D T1D_6 chip0423_275340 PBMC +10851 CAAGGDGGSQGNLIF TRAV12-2*01 TRAJ42*01 CASTLFARQETQYF TRBV6-9*01 TRBJ2-5*01 HLA-A*02:01 B2M MHCI GILGFVFTL M1 InfluenzaA PMID:34811538 tetramer-sort yes amplicon-seq transitional T cells between effector and memory populations healthy healthy_3 chip0423_637444 PBMC +10852 CASSPLANYQEPLF TRBV19*01 TRBJ2-1*01 HLA-A*02:01 B2M MHCI KLQVFLIVL IAPP HomoSapiens PMID:34811538 tetramer-sort yes amplicon-seq Naive T cells healthy healthy_3 chip0423_605253 PBMC +10853 CAVEKAWDDKIIF TRAV39*01 TRAJ30*01 CASSQAQGYEQYF TRBV3-1*01 TRBJ2-7*01 HLA-A*02:01 B2M MHCI ALGIGILTV MART1 HomoSapiens PMID:34811538 tetramer-sort yes amplicon-seq Naive T cells T1D T1D_6 chip0423_432769 PBMC +10854 CASSQVNNPGDGYTF TRBV14*01 TRBJ1-2*01 HLA-B*08:01 B2M MHCI QAKWRLQTL EBNA3A EBV PMID:34811538 tetramer-sort yes amplicon-seq effector memory T cells T1D T1D_4 chip0423_868799 PBMC +10855 CAVRRHQAGTALIF TRAV3*01 TRAJ15*01 CSARAPNTGELFF TRBV29-1*01 TRBJ2-2*01 HLA-A*01:01 B2M MHCI CTELKLSDY NP InfluenzaA PMID:34811538 tetramer-sort yes amplicon-seq transitional T cells between effector and memory populations healthy healthy_3 chip0423_432126 PBMC +10856 CAMRDPRTGANNLFF TRAV14/DV4*01 TRAJ36*01 HLA-B*08:01 B2M MHCI RAKFKQLL BZLF1 EBV PMID:34811538 tetramer-sort yes amplicon-seq effector memory T cells healthy healthy_4 chip0423_876249 PBMC +10857 CLVGPNYGGSQGNLIF TRAV4*01 TRAJ42*01 HLA-B*08:01 B2M MHCI LNHLKATPI IAPP HomoSapiens PMID:34811538 tetramer-sort yes amplicon-seq Naive T cells healthy healthy_5 chip0423_544905 PBMC +10858 CASSLNVGEGAGNTIYF TRBV7-6*01 TRBJ1-3*01 HLA-B*08:01 B2M MHCI RAKFKQLL BZLF1 EBV PMID:34811538 tetramer-sort yes amplicon-seq effector memory T cells healthy healthy_4 chip0423_366278 PBMC +10859 CASSPSEGAGAGYEQYF TRBV4-1*01 TRBJ2-7*01 HLA-B*08:01 B2M MHCI RAKFKQLL BZLF1 EBV PMID:34811538 tetramer-sort yes amplicon-seq transitional T cells between effector and memory populations healthy healthy_5 chip0423_303438 PBMC +10860 CVANGENARLMF TRAV12-1*01 TRAJ31*01 CASSEMWGAPLHF TRBV2*01 TRBJ1-6*01 HLA-A*01:01 B2M MHCI CTELKLSDY NP InfluenzaA PMID:34811538 tetramer-sort yes amplicon-seq effector T cells healthy healthy_3 chip0423_433515 PBMC +10864 CAGQHTct?GSNQLNF TRAV35*01 TRAJ49*01 CASSWTYSNQPQHF TRBV27*01 TRBJ1-5*01 HLA-B*08:01 B2M MHCI HPRYFNQL GAD2 HomoSapiens PMID:34811538 tetramer-sort yes amplicon-seq Naive T cells T1D T1D_6 chip0423_16913 PBMC +10866 CALSEENSSASRLVF TRAV19*01 TRAJ3*01 HLA-B*08:01 B2M MHCI RAKFKQLL BZLF1 EBV PMID:34811538 tetramer-sort yes amplicon-seq effector T cells healthy healthy_4 chip0423_501746 PBMC +10867 CALMRYSTLTF TRAV9-2*01 TRAJ11*01 CARRPLLAPQGYAQYF TRBV19*01 TRBJ2-7*01 HLA-A*02:01 B2M MHCI GILGFVFTL M1 InfluenzaA PMID:34811538 tetramer-sort yes amplicon-seq transitional T cells between effector and memory populations healthy healthy_4 chip0423_343863 PBMC +10869 CASSSVGREQETQYF TRBV7-9*01 TRBJ2-5*01 HLA-B*08:01 B2M MHCI RAKFKQLL BZLF1 EBV PMID:34811538 tetramer-sort yes amplicon-seq effector memory T cells T1D T1D_5 chip0423_1616 PBMC +10870 CASREMt?gGSTPPL TRAV14/DV4*01 TRAJ11*01 CASSEMWGAPLHF TRBV2*01 TRBJ1-6*01 HLA-A*01:01 B2M MHCI CTELKLSDY NP InfluenzaA PMID:34811538 tetramer-sort yes amplicon-seq transitional T cells between effector and memory populations healthy healthy_3 chip0423_396653 PBMC +10871 CALTTYGQNFVF TRAV38-1*01 TRAJ26*01 CSASRDSYEQYF TRBV20-1*01 TRBJ2-7*01 HLA-A*02:01 B2M MHCI YLLEMLWRL LMP1 EBV PMID:34811538 tetramer-sort yes amplicon-seq effector memory T cells T1D T1D_4 chip0423_47216 PBMC +10872 CIVREGGGADGLTF TRAV26-1*01 TRAJ45*01 HLA-B*08:01 B2M MHCI RAKFKQLL BZLF1 EBV PMID:34811538 tetramer-sort yes amplicon-seq effector memory T cells T1D T1D_4 chip0423_126949 PBMC +10874 CSVGTADGYTF TRBV29-1*01 TRBJ1-2*01 HLA-B*08:01 B2M MHCI RAKFKQLL BZLF1 EBV PMID:34811538 tetramer-sort yes amplicon-seq effector T cells T1D T1D_5 chip0423_238326 PBMC +10876 CASSEMWGAPLHF TRBV2*01 TRBJ1-6*01 HLA-A*01:01 B2M MHCI CTELKLSDY NP InfluenzaA PMID:34811538 tetramer-sort yes amplicon-seq transitional T cells between effector and memory populations healthy healthy_3 chip0423_664537 PBMC +10877 CASSSGQAYEQYF TRBV7-8*01 TRBJ2-7*01 HLA-B*08:01 B2M MHCI FLRGRAYGL EBNA3A EBV PMID:34811538 tetramer-sort yes amplicon-seq effector T cells healthy healthy_4 chip0423_164494 PBMC +10880 CASSSGQAYEQYF TRBV7-8*01 TRBJ2-7*01 HLA-B*08:01 B2M MHCI FLRGRAYGL EBNA3A EBV PMID:34811538 tetramer-sort yes amplicon-seq effector memory T cells healthy healthy_4 chip0423_345032 PBMC +10881 CAMSRANFGNEKLTF TRAV12-3*01 TRAJ48*01 CASSQDQGGSTDTQYF TRBV14*01 TRBJ2-3*01 HLA-A*02:01 B2M MHCI LLAGIGTVPI PGT HomoSapiens PMID:34811538 tetramer-sort yes amplicon-seq Naive T cells T1D T1D_6 chip0423_109596 PBMC +10882 CAAAETSYDKVIF TRAV13-1*01 TRAJ50*01 HLA-B*08:01 B2M MHCI RAKFKQLL BZLF1 EBV PMID:34811538 tetramer-sort yes amplicon-seq effector T cells T1D T1D_5 chip0423_862951 PBMC +10883 CARDVSGTYKYIF TRAV19*01 TRAJ40*01 CAWSASRTGELFF TRBV30*01 TRBJ2-2*01 HLA-B*08:01 B2M MHCI MMIARFKM GAD2 HomoSapiens PMID:34811538 tetramer-sort yes amplicon-seq Naive T cells T1D T1D_6 chip0423_823827 PBMC +10884 CASSLLGEGDQPQHF TRBV7-9*01 TRBJ1-5*01 HLA-B*08:01 B2M MHCI RAKFKQLL BZLF1 EBV PMID:34811538 tetramer-sort yes amplicon-seq effector T cells T1D T1D_5 chip0423_415412 PBMC +10885 CASSPLREDAGELFF TRBV7-9*01 TRBJ2-2*01 HLA-B*08:01 B2M MHCI RAKFKQLL BZLF1 EBV PMID:34811538 tetramer-sort yes amplicon-seq effector memory T cells healthy healthy_5 chip0423_776815 PBMC +10886 CALTDSWGKLQF TRAV12-2*01 TRAJ24*01 HLA-A*02:01 B2M MHCI VMNILLQYV GAD65 HomoSapiens PMID:34811538 tetramer-sort yes amplicon-seq effector T cells healthy healthy_3 chip0423_154019 PBMC +10888 CARIAGPVGNTIYF TRBV6-1*01 TRBJ1-3*01 HLA-A*02:01 B2M MHCI LLAGIGTVPI PGT HomoSapiens PMID:34811538 tetramer-sort yes amplicon-seq Naive T cells T1D T1D_6 chip0423_766168 PBMC +10890 YAVGARtt?GPRGLAS TRAV8-6*01 TRAJ7*01 HLA-A*02:01 B2M MHCI GILGFVFTL M1 InfluenzaA PMID:34811538 tetramer-sort yes amplicon-seq central memory T cells healthy healthy_4 chip0423_485057 PBMC +10891 CSADSYRDIDNYGYTF TRBV20-1*01 TRBJ1-2*01 HLA-A*01:01 B2M MHCI CTELKLSDY NP InfluenzaA PMID:34811538 tetramer-sort yes amplicon-seq transitional T cells between effector and memory populations healthy healthy_3 chip0423_563396 PBMC +10892 CASRQGAYTEAFF TRBV2*01 TRBJ1-1*01 HLA-B*08:01 B2M MHCI YAKWKLCSA ZNT8 HomoSapiens PMID:34811538 tetramer-sort yes amplicon-seq Naive T cells T1D T1D_5 chip0423_537999 PBMC +10893 CASSKAGMGTSTDTQYF TRBV6-1*01 TRBJ2-3*01 HLA-A*02:01 B2M MHCI LLAGIGTVPI PGT HomoSapiens PMID:34811538 tetramer-sort yes amplicon-seq Naive T cells T1D T1D_4 chip0423_92974 PBMC +10894 CAGARGVc?gGAQKLVF TRAV27*01 TRAJ54*01 HLA-A*02:01 B2M MHCI LLFNILGGWV NS4B HCV PMID:34811538 tetramer-sort yes amplicon-seq Naive T cells healthy healthy_3 chip0423_490880 PBMC +10897 CTVWGPDRLIF TRAV8-1*01 TRAJ34*01 HLA-A*02:01 B2M MHCI YVLDHLIVV BRLF1 EBV PMID:34811538 tetramer-sort yes amplicon-seq effector memory T cells healthy healthy_3 chip0423_683524 PBMC +10898 CAPSLNSGGYQKVTF TRAV13-1*01 TRAJ13*01 CASSVVGGDYGYTF TRBV2*01 TRBJ1-2*01 HLA-B*08:01 B2M MHCI FLRGRAYGL EBNA3A EBV PMID:34811538 tetramer-sort yes amplicon-seq effector memory T cells T1D T1D_4 chip0423_408587 PBMC +10899 CAASGGSNYKLTF TRAV29/DV5*01 TRAJ53*01 HLA-A*01:01 B2M MHCI LVSDGGPNLY PB1 InfluenzaA PMID:34811538 tetramer-sort yes amplicon-seq central memory T cells healthy healthy_3 chip0423_728880 PBMC +10906 CVVNGENARLMF TRAV12-1*01 TRAJ31*01 CASSEMWGAPLHF TRBV2*01 TRBJ1-6*01 HLA-A*01:01 B2M MHCI CTELKLSDY NP InfluenzaA PMID:34811538 tetramer-sort yes amplicon-seq transitional T cells between effector and memory populations healthy healthy_3 chip0423_14854 PBMC +10910 CASEGRSGYSTLTF TRAV17*01 TRAJ11*01 CASSKQGGGGGYTF TRBV6-1*01 TRBJ1-2*01 HLA-A*02:01 B2M MHCI FLYALALLL LMP2 EBV PMID:34811538 tetramer-sort yes amplicon-seq central memory T cells healthy healthy_3 chip0423_528107 PBMC +10912 CASSRYSVDTQHF TRBV19*01 TRBJ2-3*01 HLA-A*02:01 B2M MHCI GILGFVFTL M1 InfluenzaA PMID:34811538 tetramer-sort yes amplicon-seq effector T cells healthy healthy_3 chip0423_164414 PBMC +10913 CIAPNW??gANNLFF TRAV26-1*01 TRAJ36*01 CASSLWDSYEQYF TRBV5-6*01 TRBJ2-7*01 HLA-A*02:01 B2M MHCI LLAGIGTVPI PGT HomoSapiens PMID:34811538 tetramer-sort yes amplicon-seq Naive T cells healthy healthy_3 chip0423_404206 PBMC +10917 CILPLAGGTSYGKLTF TRAV26-2*01 TRAJ52*01 HLA-B*08:01 B2M MHCI FLRGRAYGL EBNA3A EBV PMID:34811538 tetramer-sort yes amplicon-seq effector memory T cells healthy healthy_4 chip0423_135279 PBMC +10918 YASSPLGIPANTEAFF TRBV7-9*01 TRBJ1-1*01 HLA-B*08:01 B2M MHCI RAKFKQLL BZLF1 EBV PMID:34811538 tetramer-sort yes amplicon-seq effector memory T cells T1D T1D_5 chip0423_128734 PBMC +10919 CASSVDPGENTGELFF TRBV9*01 TRBJ2-2*01 HLA-A*02:01 B2M MHCI ALAGIGILTV MART1 HomoSapiens PMID:34811538 tetramer-sort yes amplicon-seq Naive T cells healthy healthy_4 chip0423_484221 PBMC +10920 CGMSMSNFGYVKLTF TRAV12-3*01 TRAJ48*01 CSGGQSRGKNTEAFF TRBV29-1*01 TRBJ1-1*01 HLA-A*02:01 B2M MHCI LLAGIGTVPI PGT HomoSapiens PMID:34811538 tetramer-sort yes amplicon-seq Naive T cells healthy healthy_3 chip0423_431933 PBMC +10921 CSAGRDGANEQLFF TRBV29-1*01 TRBJ1-4*01 HLA-A*01:01 B2M MHCI CTELKLSDY NP InfluenzaA PMID:34811538 tetramer-sort yes amplicon-seq Naive T cells healthy healthy_5 chip0423_345160 PBMC +10922 CASSPPGRNEKLFF TRBV12-3*01,TRBV12-4*01 TRBJ1-4*01 HLA-B*08:01 B2M MHCI RAKFKQLL BZLF1 EBV PMID:34811538 tetramer-sort yes amplicon-seq effector T cells T1D T1D_5 chip0423_841907 PBMC +10923 CAVKTGFQKLVF TRAV12-2*01 TRAJ8*01 CASSIREERTEAFF TRBV19*01 TRBJ1-1*01 HLA-A*01:01 B2M MHCI CTELKLSDY NP InfluenzaA PMID:34811538 tetramer-sort yes amplicon-seq Naive T cells T1D T1D_6 chip0423_80727 PBMC +10924 CAATETSYDKVIF TRAV13-1*01 TRAJ50*01 CASRPRVNEQFF TRBV28*01 TRBJ2-1*01 HLA-A*02:01 B2M MHCI LLAGIGTVPI PGT HomoSapiens PMID:34811538 tetramer-sort yes amplicon-seq Naive T cells healthy healthy_3 chip0423_724117 PBMC +10925 CASSYGTRGEQYF TRBV5-6*01 TRBJ2-7*01 HLA-B*08:01 B2M MHCI WPTVRERM Nef HIV-1 PMID:34811538 tetramer-sort yes amplicon-seq Naive T cells healthy healthy_5 chip0423_497820 PBMC +10926 CASSDLRQTSSYNEQFF TRBV19*01 TRBJ2-1*01 HLA-A*01:01 B2M MHCI CTELKLSDY NP InfluenzaA PMID:34811538 tetramer-sort yes amplicon-seq transitional T cells between effector and memory populations healthy healthy_3 chip0423_499552 PBMC +10930 CAAQAAG??cSGDRFCF TRAV20*01 TRAJ49*01 CASSPLLATHGYEQYF TRBV19*01 TRBJ2-7*01 HLA-A*01:01 B2M MHCI CTELKLSDY NP InfluenzaA PMID:34811538 tetramer-sort yes amplicon-seq transitional T cells between effector and memory populations healthy healthy_3 chip0423_671096 PBMC +10931 CASRVGREPTGALFV TRBV3-1*01 TRBJ2-2*01 HLA-B*08:01 B2M MHCI RAKFKQLL BZLF1 EBV PMID:34811538 tetramer-sort yes amplicon-seq effector T cells healthy healthy_4 chip0423_257189 PBMC +10935 CALSEAGYSGAGSYQLTF TRAV19*01 TRAJ28*01 CASSRRQGPYNEQFF TRBV3-1*01 TRBJ2-1*01 HLA-B*08:01 B2M MHCI QAKWRLQTL EBNA3A EBV PMID:34811538 tetramer-sort yes amplicon-seq Naive T cells T1D T1D_4 chip0423_8013 PBMC +10937 CAVEVDKLIF TRAV41*01 TRAJ34*01 HLA-A*01:01 B2M MHCI CTELKLSDY NP InfluenzaA PMID:34811538 tetramer-sort yes amplicon-seq transitional T cells between effector and memory populations healthy healthy_3 chip0423_666370 PBMC +10939 CAASMGYGNKLVF TRAV13-1*01 TRAJ47*01 HLA-A*01:01 B2M MHCI CTELKLSDY NP InfluenzaA PMID:34811538 tetramer-sort yes amplicon-seq transitional T cells between effector and memory populations healthy healthy_3 chip0423_461862 PBMC +10942 CASSQLGGVYNEQFF TRBV7-9*01 TRBJ2-1*01 HLA-B*08:01 B2M MHCI RAKFKQLL BZLF1 EBV PMID:34811538 tetramer-sort yes amplicon-seq transitional T cells between effector and memory populations T1D T1D_5 chip0423_15619 PBMC +10944 CASSYSSTGEYF TRBV6-2*01,TRBV6-3*01 TRBJ2-7*01 HLA-A*02:01 B2M MHCI YLLEMLWRL LMP1 EBV PMID:34811538 tetramer-sort yes amplicon-seq central memory T cells T1D T1D_4 chip0423_38938 PBMC +10946 CAATETSYDKVIF TRAV13-1*01 TRAJ50*01 CASSLGQAYEQYF TRBV7-8*01 TRBJ2-7*01 HLA-B*08:01 B2M MHCI RAKFKQLL BZLF1 EBV PMID:34811538 tetramer-sort yes amplicon-seq effector memory T cells T1D T1D_5 chip0423_565248 PBMC +10947 CATPSADTQSF TRBV6-1*01 TRBJ2-3*01 HLA-A*02:01 B2M MHCI LLAGIGTVPI PGT HomoSapiens PMID:34811538 tetramer-sort yes amplicon-seq Naive T cells healthy healthy_4 chip0423_236853 PBMC +10948 CAATETSYDKVIF TRAV13-1*01 TRAJ50*01 CAGCGRGSPEAFF TRBV25-1*01 TRBJ1-1*01 HLA-B*08:01 B2M MHCI FLRGRAYGL EBNA3A EBV PMID:34811538 tetramer-sort yes amplicon-seq effector memory T cells T1D T1D_4 chip0423_45661 PBMC +10949 CASSHGGSYEQYF TRBV6-1*01 TRBJ2-7*01 HLA-A*02:01 B2M MHCI ELAGIGILTV MART1 HomoSapiens PMID:34811538 tetramer-sort yes amplicon-seq central memory T cells T1D T1D_6 chip0423_401345 PBMC +10950 CASSEMWGAPLHF TRBV2*01 TRBJ1-6*01 HLA-A*01:01 B2M MHCI CTELKLSDY NP InfluenzaA PMID:34811538 tetramer-sort yes amplicon-seq transitional T cells between effector and memory populations healthy healthy_3 chip0423_92867 PBMC +10951 CASSTTRAGTWPLHF TRBV7-9*01 TRBJ1-6*01 HLA-B*08:01 B2M MHCI RAKFKQLL BZLF1 EBV PMID:34811538 tetramer-sort yes amplicon-seq effector memory T cells healthy healthy_4 chip0423_698156 PBMC +10952 CASSLAIGGSYEQYF TRBV28*01 TRBJ2-7*01 HLA-A*02:01 B2M MHCI LLAGIGTVPI PGT HomoSapiens PMID:34811538 tetramer-sort yes amplicon-seq transitional T cells between effector and memory populations healthy healthy_4 chip0423_320253 PBMC +10953 CAARETSYDKVIF TRAV13-1*01 TRAJ50*01 CASSPLGTADSGNTIYF TRBV11-1*01 TRBJ1-3*01 HLA-B*08:01 B2M MHCI RAKFKQLL BZLF1 EBV PMID:34811538 tetramer-sort yes amplicon-seq effector memory T cells T1D T1D_5 chip0423_449324 PBMC +10954 CASRPSWPSNEHLFF TRBV12-3*01,TRBV12-4*01 TRBJ1-4*01 HLA-A*02:01 B2M MHCI LLAGIGTVPI PGT HomoSapiens PMID:34811538 tetramer-sort yes amplicon-seq Naive T cells T1D T1D_4 chip0423_60580 PBMC +10955 CAITTCTPSGLTF TRAV12-2*01 TRAJ44*01 HLA-A*02:01 B2M MHCI LLAGIGTVPI PGT HomoSapiens PMID:34811538 tetramer-sort yes amplicon-seq transitional T cells between effector and memory populations healthy healthy_3 chip0423_708225 PBMC +10957 CALRAGDMRF TRAV9-2*01 TRAJ43*01 CASTPLGQASGNTIYF TRBV7-9*01 TRBJ1-3*01 HLA-B*08:01 B2M MHCI RAKFKQLL BZLF1 EBV PMID:34811538 tetramer-sort yes amplicon-seq effector memory T cells T1D T1D_5 chip0423_96459 PBMC +10959 CASSVSGAPYEQYF TRBV9*01 TRBJ2-7*01 HLA-B*08:01 B2M MHCI FLRGRAYGL EBNA3A EBV PMID:34811538 tetramer-sort yes amplicon-seq effector T cells T1D T1D_6 chip0423_655724 PBMC +10961 CASRQGWETQYF TRBV27*01 TRBJ2-5*01 HLA-B*08:01 B2M MHCI YAKWKLCSA ZNT8 HomoSapiens PMID:34811538 tetramer-sort yes amplicon-seq Naive T cells T1D T1D_6 chip0423_860702 PBMC +10963 CASSPGTSETGELFF TRBV12-3*01,TRBV12-4*01 TRBJ2-2*01 HLA-B*08:01 B2M MHCI RAKFKQLL BZLF1 EBV PMID:34811538 tetramer-sort yes amplicon-seq effector memory T cells T1D T1D_5 chip0423_556677 PBMC +10966 CAASETSYDKMIF TRAV13-1*01 TRAJ50*01 CASSTTRAGTWPLHF TRBV7-9*01 TRBJ1-6*01 HLA-B*08:01 B2M MHCI RAKFKQLL BZLF1 EBV PMID:34811538 tetramer-sort yes amplicon-seq effector memory T cells healthy healthy_4 chip0423_40838 PBMC +10967 CATSDLTGSDTQYF TRBV24-1*01 TRBJ2-3*01 HLA-A*02:01 B2M MHCI LLAGIGTVPI PGT HomoSapiens PMID:34811538 tetramer-sort yes amplicon-seq Naive T cells T1D T1D_4 chip0423_741819 PBMC +10968 CASSLDWGNTEAFF TRBV27*01 TRBJ1-1*01 HLA-A*02:01 B2M MHCI YLLEMLWRL LMP1 EBV PMID:34811538 tetramer-sort yes amplicon-seq Naive T cells T1D T1D_4 chip0423_356342 PBMC +10969 CALSEAGNQGGKLIF TRAV19*01 TRAJ23*01 HLA-A*01:01 B2M MHCI PTEKGANEY ZNT8 HomoSapiens PMID:34811538 tetramer-sort yes amplicon-seq Naive T cells healthy healthy_5 chip0423_206338 PBMC +10970 CADYSSASKIIF TRAV1-1*01 TRAJ3*01 CASSQDGLAATSTDTQYF TRBV4-1*01 TRBJ2-3*01 HLA-A*01:01 B2M MHCI CTELKLSDY NP InfluenzaA PMID:34811538 tetramer-sort yes amplicon-seq transitional T cells between effector and memory populations healthy healthy_3 chip0423_88634 PBMC +10971 CASSFRGYYEQYF TRBV13*01 TRBJ2-7*01 HLA-A*02:01 B2M MHCI LLAGIGTVPI PGT HomoSapiens PMID:34811538 tetramer-sort yes amplicon-seq Naive T cells T1D T1D_6 chip0423_589490 PBMC +10972 CANSQDTRGNTGELFF TRBV4-3*01 TRBJ2-2*01 HLA-A*02:01 B2M MHCI LLAGIGTVPI PGT HomoSapiens PMID:34811538 tetramer-sort yes amplicon-seq effector memory T cells healthy healthy_4 chip0423_75913 PBMC +10973 CASSSGQAYEQYF TRBV7-8*01 TRBJ2-7*01 HLA-B*08:01 B2M MHCI FLRGRAYGL EBNA3A EBV PMID:34811538 tetramer-sort yes amplicon-seq effector T cells healthy healthy_4 chip0423_419451 PBMC +10974 CAASETSYDKVIF TRAV13-1*01 TRAJ50*01 HLA-B*08:01 B2M MHCI RAKFKQLL BZLF1 EBV PMID:34811538 tetramer-sort yes amplicon-seq effector memory T cells T1D T1D_5 chip0423_518865 PBMC +10975 CASSLAVGEGPQHF TRBV7-9*01 TRBJ1-5*01 HLA-B*08:01 B2M MHCI RAKFKQLL BZLF1 EBV PMID:34811538 tetramer-sort yes amplicon-seq effector T cells T1D T1D_4 chip0423_300714 PBMC +10976 CAFGGGGFKTIF TRAV12-2*01 TRAJ9*01 CASTPSARGGETQYF TRBV3-1*01 TRBJ2-5*01 HLA-B*08:01 B2M MHCI YAYAKWKL ZNT8 HomoSapiens PMID:34811538 tetramer-sort yes amplicon-seq Naive T cells T1D T1D_5 chip0423_117382 PBMC +10978 CASSLHPW??gAAYNEQFF TRBV4-3*01 TRBJ2-1*01 HLA-B*08:01 B2M MHCI FLRGRAYGL EBNA3A EBV PMID:34811538 tetramer-sort yes amplicon-seq effector T cells T1D T1D_6 chip0423_367474 PBMC +10979 CASSQDGYGGDQPQHF TRBV4-1*01 TRBJ1-5*01 HLA-A*01:01 B2M MHCI CTELKLSDY NP InfluenzaA PMID:34811538 tetramer-sort yes amplicon-seq transitional T cells between effector and memory populations healthy healthy_3 chip0423_251569 PBMC +10980 CASSTTRAGTWPLHF TRBV7-9*01 TRBJ1-6*01 HLA-B*08:01 B2M MHCI RAKFKQLL BZLF1 EBV PMID:34811538 tetramer-sort yes amplicon-seq effector memory T cells healthy healthy_4 chip0423_101813 PBMC +10982 CAVSSRMLTF TRAV1-1*01 TRAJ39*01 CASTGTSDSTDTQYF TRBV2*01 TRBJ2-3*01 HLA-A*01:01 B2M MHCI CTELKLSDY NP InfluenzaA PMID:34811538 tetramer-sort yes amplicon-seq transitional T cells between effector and memory populations healthy healthy_3 chip0423_464785 PBMC +10983 CASQGGSQGNLIF TRAV20*01 TRAJ42*01 CASSIGQGLTIFF TRBV27*01 TRBJ1-3*01 HLA-A*02:01 B2M MHCI TLLANVTAV VP6 RotavirusA PMID:34811538 tetramer-sort yes amplicon-seq transitional T cells between effector and memory populations T1D T1D_6 chip0423_22242 PBMC +10984 CATPCG??gHEKLFF TRBV19*01 TRBJ1-4*01 HLA-A*02:01 B2M MHCI YVLDHLIVV BRLF1 EBV PMID:34811538 tetramer-sort yes amplicon-seq effector memory T cells healthy healthy_3 chip0423_332984 PBMC +10985 RASSRLGEPTGELFF TRBV7-2*01 TRBJ2-2*01 HLA-B*08:01 B2M MHCI RAKFKQLL BZLF1 EBV PMID:34811538 tetramer-sort yes amplicon-seq effector memory T cells T1D T1D_5 chip0423_16547 PBMC +10987 CAMRDPRTGANNLFF TRAV14/DV4*01 TRAJ36*01 CASSQAPGQRTGELFF TRBV4-1*01 TRBJ2-2*01 HLA-B*08:01 B2M MHCI RAKFKQLL BZLF1 EBV PMID:34811538 tetramer-sort yes amplicon-seq effector T cells healthy healthy_4 chip0423_740552 PBMC +10989 CILRDWAGGTSYGKLTF TRAV26-2*01 TRAJ52*01 HLA-A*02:01 B2M MHCI VVTGVLVYL ZNT8 HomoSapiens PMID:34811538 tetramer-sort yes amplicon-seq Naive T cells T1D T1D_6 chip0423_202031 PBMC +10991 CASSLWGSVSGAEAFF TRBV7-8*01 TRBJ1-1*01 HLA-A*02:01 B2M MHCI LLAGIGTVPI PGT HomoSapiens PMID:34811538 tetramer-sort yes amplicon-seq Naive T cells T1D T1D_4 chip0423_328091 PBMC +10992 CASSYSNQPQHF TRBV6-2*01,TRBV6-3*01 TRBJ1-5*01 HLA-A*01:01 B2M MHCI GSHLVEALY INS HomoSapiens PMID:34811538 tetramer-sort yes amplicon-seq Naive T cells T1D T1D_5 chip0423_202594 PBMC +10994 CVVNGENARLMF TRAV12-1*01 TRAJ31*01 CASSEMWGAPLHF TRBV2*01 TRBJ1-6*01 HLA-A*01:01 B2M MHCI CTELKLSDY NP InfluenzaA PMID:34811538 tetramer-sort yes amplicon-seq transitional T cells between effector and memory populations healthy healthy_3 chip0423_879125 PBMC +10996 CASSQEETQYF TRBV5-4*01 TRBJ2-5*01 HLA-A*02:01 B2M MHCI LLAGIGTVPI PGT HomoSapiens PMID:34811538 tetramer-sort yes amplicon-seq Naive T cells T1D T1D_6 chip0423_146289 PBMC +10997 CAVNGGGNKLTF TRAV12-2*01 TRAJ10*01 HLA-A*02:01 B2M MHCI LAVDGVLSV ZNT8 HomoSapiens PMID:34811538 tetramer-sort yes amplicon-seq transitional T cells between effector and memory populations healthy healthy_3 chip0423_215236 PBMC +10999 CASSHVNNPGDGYTF TRBV14*01 TRBJ1-2*01 HLA-B*08:01 B2M MHCI QAKWRLQTL EBNA3A EBV PMID:34811538 tetramer-sort yes amplicon-seq effector T cells T1D T1D_4 chip0423_693394 PBMC +11003 CAFTGGFKTIS TRAV17*01 TRAJ9*01 HLA-A*02:01 B2M MHCI GILGFVFTL M1 InfluenzaA PMID:34811538 tetramer-sort yes amplicon-seq central memory T cells healthy healthy_4 chip0423_406197 PBMC +11004 CASSATGDYYGYTF TRBV3-1*01 TRBJ1-2*01 HLA-A*02:01 B2M MHCI YVLDHLIVV BRLF1 EBV PMID:34811538 tetramer-sort yes amplicon-seq effector memory T cells healthy healthy_4 chip0423_789329 PBMC +11006 CASSRVRDTDTQYF TRBV7-9*01 TRBJ2-3*01 HLA-B*08:01 B2M MHCI RAKFKQLL BZLF1 EBV PMID:34811538 tetramer-sort yes amplicon-seq effector memory T cells T1D T1D_4 chip0423_192053 PBMC +11007 CASSIRSTGELFF TRBV19*01 TRBJ2-2*01 HLA-A*02:01 B2M MHCI GILGFVFTL M1 InfluenzaA PMID:34811538 tetramer-sort yes amplicon-seq transitional T cells between effector and memory populations healthy healthy_3 chip0423_594753 PBMC +11008 CASSLNSVAGELFF TRBV4-1*01 TRBJ2-2*01 HLA-A*02:01 B2M MHCI ALAGIGILTV MART1 HomoSapiens PMID:34811538 tetramer-sort yes amplicon-seq Naive T cells healthy healthy_3 chip0423_106556 PBMC +11009 CASSSGQDPYGYTF TRBV7-2*01 TRBJ1-2*01 HLA-A*01:01 B2M MHCI VTDAAHLLI ZNT8 HomoSapiens PMID:34811538 tetramer-sort yes amplicon-seq Naive T cells healthy healthy_3 chip0423_637619 PBMC +11010 CASSVREGTTDTQYF TRBV9*01 TRBJ2-3*01 HLA-B*08:01 B2M MHCI CPLSKILL LMP2A EBV PMID:34811538 tetramer-sort yes amplicon-seq Naive T cells T1D T1D_6 chip0423_61118 PBMC +11012 CVVNTLGc?tGRYHLPF TRAV10*01 TRAJ28*01 CSVDGRGAGELFF TRBV29-1*01 TRBJ2-2*01 HLA-A*02:01 B2M MHCI ALAGIGILTV MART1 HomoSapiens PMID:34811538 tetramer-sort yes amplicon-seq Naive T cells healthy healthy_3 chip0423_791315 PBMC +11013 CARIFVR??tGLCLLIF TRAV19*01 TRAJ4*01 HLA-A*01:01 B2M MHCI CTELKLSDY NP InfluenzaA PMID:34811538 tetramer-sort yes amplicon-seq transitional T cells between effector and memory populations healthy healthy_3 chip0423_502555 PBMC +11014 CASSQVNNPGDGYTF TRBV14*01 TRBJ1-2*01 HLA-B*08:01 B2M MHCI QAKWRLQTL EBNA3A EBV PMID:34811538 tetramer-sort yes amplicon-seq effector T cells T1D T1D_4 chip0423_568962 PBMC +11015 CAVNSGNTPLVF TRAV1-2*01 TRAJ29*01 CASSQVNNPGDGYTF TRBV14*01 TRBJ1-2*01 HLA-B*08:01 B2M MHCI QAKWRLQTL EBNA3A EBV PMID:34811538 tetramer-sort yes amplicon-seq effector T cells T1D T1D_4 chip0423_68591 PBMC +11016 CASSDWVGSEDRARYTF TRBV2*01 TRBJ1-2*01 HLA-A*02:01 B2M MHCI RLLPLLALL PREINS HomoSapiens PMID:34811538 tetramer-sort yes amplicon-seq Naive T cells T1D T1D_4 chip0423_213139 PBMC +11017 CSVAGVDYEQYF TRBV29-1*01 TRBJ2-7*01 HLA-A*01:01 B2M MHCI VCGERGFFYT PREINS HomoSapiens PMID:34811538 tetramer-sort yes amplicon-seq effector memory T cells healthy healthy_5 chip0423_601904 PBMC +11018 CALSEGNTDKLIF TRAV19*01 TRAJ34*01 CASRAPPRa?cLFVHAQFF TRBV19*01 TRBJ2-1*01 HLA-A*01:01 B2M MHCI CTELKLSDY NP InfluenzaA PMID:34811538 tetramer-sort yes amplicon-seq transitional T cells between effector and memory populations healthy healthy_3 chip0423_533293 PBMC +11019 CSADSYRDIDNYGYTF TRBV20-1*01 TRBJ1-2*01 HLA-A*01:01 B2M MHCI CTELKLSDY NP InfluenzaA PMID:34811538 tetramer-sort yes amplicon-seq transitional T cells between effector and memory populations healthy healthy_3 chip0423_764035 PBMC +11020 CASSWLGDRYNSPLHF TRBV7-9*01 TRBJ1-6*01 HLA-B*08:01 B2M MHCI RAKFKQLL BZLF1 EBV PMID:34811538 tetramer-sort yes amplicon-seq effector memory T cells T1D T1D_5 chip0423_854067 PBMC +11021 CATVGVSGYSTLTF TRAV17*01 TRAJ11*01 HLA-A*02:01 B2M MHCI FLYALALLL LMP2 EBV PMID:34811538 tetramer-sort yes amplicon-seq effector memory T cells T1D T1D_6 chip0423_350766 PBMC +11022 CAAMETSYDKVIF TRAV13-1*01 TRAJ50*01 CATRDHRDGTGELFF TRBV24-1*01 TRBJ2-2*01 HLA-B*08:01 B2M MHCI RAKFKQLL BZLF1 EBV PMID:34811538 tetramer-sort yes amplicon-seq effector memory T cells T1D T1D_5 chip0423_472279 PBMC +11023 CAAPTGGGADGLTF TRAV21*01 TRAJ45*01 CASSQELAGARRETQYF TRBV4-3*01 TRBJ2-5*01 HLA-A*02:01 B2M MHCI RLLYPDYQI ZNT8 HomoSapiens PMID:34811538 tetramer-sort yes amplicon-seq Naive T cells healthy healthy_3 chip0423_297506 PBMC +11024 CAASGYNTDKLIF TRAV29/DV5*01 TRAJ34*01 HLA-A*01:01 B2M MHCI CTELKLSDY NP InfluenzaA PMID:34811538 tetramer-sort yes amplicon-seq transitional T cells between effector and memory populations healthy healthy_3 chip0423_758595 PBMC +11025 CVVRAWat?SSCQFLW TRAV10*01 TRAJ33*01 HLA-B*08:01 B2M MHCI RAKFKQLL BZLF1 EBV PMID:34811538 tetramer-sort yes amplicon-seq effector T cells T1D T1D_5 chip0423_469033 PBMC +11026 CASSQEVTDTQYF TRBV4-3*01 TRBJ2-3*01 HLA-A*02:01 B2M MHCI YLLEMLWRL LMP1 EBV PMID:34811538 tetramer-sort yes amplicon-seq central memory T cells T1D T1D_4 chip0423_816173 PBMC +11028 CIVRVVCac?GTASQLTF TRAV26-1*01 TRAJ44*01 CASSLAVGEGPQHF TRBV7-9*01 TRBJ1-5*01 HLA-B*08:01 B2M MHCI RAKFKQLL BZLF1 EBV PMID:34811538 tetramer-sort yes amplicon-seq effector memory T cells T1D T1D_4 chip0423_92596 PBMC +11029 CASSQTFPNTGELFF TRBV3-1*01 TRBJ2-2*01 HLA-B*08:01 B2M MHCI RAKFKQLL BZLF1 EBV PMID:34811538 tetramer-sort yes amplicon-seq effector T cells healthy healthy_4 chip0423_293225 PBMC +11031 CSADGYRGPYGYTF TRBV20-1*01 TRBJ1-2*01 HLA-A*01:01 B2M MHCI CTELKLSDY NP InfluenzaA PMID:34811538 tetramer-sort yes amplicon-seq transitional T cells between effector and memory populations healthy healthy_3 chip0423_410688 PBMC +11032 CAVRa?cKLIF TRAV1-1*01 TRAJ32*01 CASSFMGGGYEQYF TRBV28*01 TRBJ2-7*01 HLA-A*01:01 B2M MHCI LTSLTILQLY G6PC2 HomoSapiens PMID:34811538 tetramer-sort yes amplicon-seq Naive T cells healthy healthy_3 chip0423_62386 PBMC +11035 CALSSYSGGYQKVTF TRAV19*01 TRAJ13*01 HLA-A*01:01 B2M MHCI CTELKLSDY NP InfluenzaA PMID:34811538 tetramer-sort yes amplicon-seq effector T cells healthy healthy_3 chip0423_404647 PBMC +11037 CAVEKEga??acTDKLIF TRAV21*01 TRAJ34*01 CASSLNVGEGAGNTIYF TRBV7-6*01 TRBJ1-3*01 HLA-B*08:01 B2M MHCI RAKFKQLL BZLF1 EBV PMID:34811538 tetramer-sort yes amplicon-seq effector memory T cells healthy healthy_4 chip0423_658676 PBMC +11038 CAETAPGSFQLTF TRAV5*01 TRAJ28*01 HLA-A*02:01 B2M MHCI VMNILLQYV GAD65 HomoSapiens PMID:34811538 tetramer-sort yes amplicon-seq Naive T cells healthy healthy_3 chip0423_399375 PBMC +11039 CSADSYRDIDNYGLHL TRBV20-1*01 TRBJ1-2*01 HLA-A*01:01 B2M MHCI CTELKLSDY NP InfluenzaA PMID:34811538 tetramer-sort yes amplicon-seq transitional T cells between effector and memory populations healthy healthy_3 chip0423_318234 PBMC +11040 CAMRDPRTGANNLFF TRAV14/DV4*01 TRAJ36*01 CAGRLHPW??aAAYNEQFF TRBV4-3*01 TRBJ2-1*01 HLA-B*08:01 B2M MHCI RAKFKQLL BZLF1 EBV PMID:34811538 tetramer-sort yes amplicon-seq effector memory T cells healthy healthy_4 chip0423_603152 PBMC +11041 CASRPTGGADTQYF TRBV2*01 TRBJ2-3*01 HLA-A*02:01 B2M MHCI SLYNTVATLY GAG HIV-1 PMID:34811538 tetramer-sort yes amplicon-seq transitional T cells between effector and memory populations healthy healthy_3 chip0423_68705 PBMC +11042 CAVEDQGRSYNTDKLIF TRAV2*01 TRAJ34*01 HLA-B*08:01 B2M MHCI RAKFKQLL BZLF1 EBV PMID:34811538 tetramer-sort yes amplicon-seq effector memory T cells healthy healthy_4 chip0423_822403 PBMC +11043 CASSFSGSSAGELFF TRBV12-3*01,TRBV12-4*01 TRBJ2-2*01 HLA-B*08:01 B2M MHCI RAKFKQLL BZLF1 EBV PMID:34811538 tetramer-sort yes amplicon-seq effector memory T cells healthy healthy_5 chip0423_313824 PBMC +11044 CAMRAFYPGAGSYQLTF TRAV14/DV4*01 TRAJ28*01 HLA-B*08:01 B2M MHCI MALWMRLL INS HomoSapiens PMID:34811538 tetramer-sort yes amplicon-seq Naive T cells healthy healthy_5 chip0423_323243 PBMC +11045 CAPVPG??tNRKLTF TRAV41*01 TRAJ56*01 CASSQDGYGGDQPQHF TRBV4-1*01 TRBJ1-5*01 HLA-A*01:01 B2M MHCI CTELKLSDY NP InfluenzaA PMID:34811538 tetramer-sort yes amplicon-seq transitional T cells between effector and memory populations healthy healthy_3 chip0423_741322 PBMC +11046 CAADLYNPAPLLF TRAV29/DV5*01 TRAJ34*01 CASSQQGVREQFF TRBV3-1*01 TRBJ2-1*01 HLA-A*02:01 B2M MHCI ALWGPDPAAA PREINS HomoSapiens PMID:34811538 tetramer-sort yes amplicon-seq Naive T cells healthy healthy_3 chip0423_769771 PBMC +11047 CADYSSASKIIF TRAV1-1*01 TRAJ3*01 CASSQNGLAATSTDTQYF TRBV4-1*01 TRBJ2-3*01 HLA-A*01:01 B2M MHCI CTELKLSDY NP InfluenzaA PMID:34811538 tetramer-sort yes amplicon-seq transitional T cells between effector and memory populations healthy healthy_3 chip0423_247694 PBMC +11048 CASSQQGRNEKLFF TRBV28*01 TRBJ1-4*01 HLA-B*08:01 B2M MHCI RAKFKQLL BZLF1 EBV PMID:34811538 tetramer-sort yes amplicon-seq effector T cells healthy healthy_5 chip0423_537848 PBMC +11049 CVVNGENARLMF TRAV12-1*01 TRAJ31*01 HLA-A*01:01 B2M MHCI CTELKLSDY NP InfluenzaA PMID:34811538 tetramer-sort yes amplicon-seq effector T cells healthy healthy_3 chip0423_629862 PBMC +11051 CASTPGQGFGYF TRBV28*01 TRBJ2-7*01 HLA-A*02:01 B2M MHCI LLAGIGTVPI PGT HomoSapiens PMID:34811538 tetramer-sort yes amplicon-seq transitional T cells between effector and memory populations healthy healthy_3 chip0423_526367 PBMC +11053 CAVSDRNFNKFYF TRAV8-4*01 TRAJ21*01 HLA-A*01:01 B2M MHCI CTELKLSDY NP InfluenzaA PMID:34811538 tetramer-sort yes amplicon-seq transitional T cells between effector and memory populations healthy healthy_3 chip0423_805267 PBMC +11056 CAPVPG??tNRKLTF TRAV41*01 TRAJ56*01 HLA-A*01:01 B2M MHCI CTELKLSDY NP InfluenzaA PMID:34811538 tetramer-sort yes amplicon-seq transitional T cells between effector and memory populations healthy healthy_3 chip0423_589929 PBMC +11057 CAVGSPNYGGSQGNLIF TRAV21*01 TRAJ42*01 CASSLEPHGYTF TRBV5-4*01 TRBJ1-2*01 HLA-A*01:01 B2M MHCI CTELKLSDY NP InfluenzaA PMID:34811538 tetramer-sort yes amplicon-seq transitional T cells between effector and memory populations healthy healthy_3 chip0423_571066 PBMC +11058 CASSEMWGAPLHF TRBV2*01 TRBJ1-6*01 HLA-A*01:01 B2M MHCI CTELKLSDY NP InfluenzaA PMID:34811538 tetramer-sort yes amplicon-seq transitional T cells between effector and memory populations healthy healthy_3 chip0423_417989 PBMC +11059 CASSPDGSTGELFF TRBV12-3*01,TRBV12-4*01 TRBJ2-2*01 HLA-B*08:01 B2M MHCI RAKFKQLL BZLF1 EBV PMID:34811538 tetramer-sort yes amplicon-seq effector T cells T1D T1D_5 chip0423_416264 PBMC +11060 CILPLAGGTSYGKLTF TRAV26-2*01 TRAJ52*01 CASSLGQAYEQYF TRBV7-8*01 TRBJ2-7*01 HLA-B*08:01 B2M MHCI FLRGRAYGL EBNA3A EBV PMID:34811538 tetramer-sort yes amplicon-seq effector T cells T1D T1D_4 chip0423_319676 PBMC +11061 CVVNGENARLMF TRAV12-1*01 TRAJ31*01 HLA-A*01:01 B2M MHCI CTELKLSDY NP InfluenzaA PMID:34811538 tetramer-sort yes amplicon-seq transitional T cells between effector and memory populations healthy healthy_3 chip0423_44088 PBMC +11062 CVSGSARQLTF TRAV12-1*01 TRAJ22*01 CAWRWGGTGELFF TRBV30*01 TRBJ2-2*01 HLA-B*08:01 B2M MHCI YAYAKWKL ZNT8 HomoSapiens PMID:34811538 tetramer-sort yes amplicon-seq Naive T cells T1D T1D_6 chip0423_173511 PBMC +11064 WAMSRPNFGNEKLTS TRAV12-3*01 TRAJ48*01 CASSQFTSVGEVPEAFF TRBV14*01 TRBJ1-1*01 HLA-A*02:01 B2M MHCI LLAGIGTVPI PGT HomoSapiens PMID:34811538 tetramer-sort yes amplicon-seq effector T cells healthy healthy_4 chip0423_592636 PBMC +11065 CASRGQLGGNQPQHF TRBV28*01 TRBJ1-5*01 HLA-A*02:01 B2M MHCI YVLDHLIVV BRLF1 EBV PMID:34811538 tetramer-sort yes amplicon-seq effector memory T cells T1D T1D_4 chip0423_272706 PBMC +11066 CASSLAVGEGPQHF TRBV7-9*01 TRBJ1-5*01 HLA-B*08:01 B2M MHCI RAKFKQLL BZLF1 EBV PMID:34811538 tetramer-sort yes amplicon-seq effector memory T cells T1D T1D_4 chip0423_53407 PBMC +11067 CASSLIVSGGANEQFF TRBV7-4*01 TRBJ2-1*01 HLA-B*08:01 B2M MHCI RAKFKQLL BZLF1 EBV PMID:34811538 tetramer-sort yes amplicon-seq transitional T cells between effector and memory populations healthy healthy_4 chip0423_846903 PBMC +11068 CAVEDQGRSYNTDKLLF TRAV2*01 TRAJ34*01 HLA-B*08:01 B2M MHCI RAKFKQLL BZLF1 EBV PMID:34811538 tetramer-sort yes amplicon-seq effector memory T cells healthy healthy_4 chip0423_491348 PBMC +11069 CATDSGHNRLAF TRAV17*01 TRAJ7*01 CASMHRGYNEQFF TRBV25-1*01 TRBJ2-1*01 HLA-B*08:01 B2M MHCI ALKCKGFHV NP InfluenzaA PMID:34811538 tetramer-sort yes amplicon-seq Naive T cells T1D T1D_6 chip0423_816146 PBMC +11072 CASSSLTASEQLF TRBV19*01 TRBJ2-1*01 HLA-A*02:01 B2M MHCI LLAGIGTVPI PGT HomoSapiens PMID:34811538 tetramer-sort yes amplicon-seq Naive T cells T1D T1D_6 chip0423_404375 PBMC +11073 CAVEDQGRSYNTDKLIF TRAV2*01 TRAJ34*01 HLA-B*08:01 B2M MHCI RAKFKQLL BZLF1 EBV PMID:34811538 tetramer-sort yes amplicon-seq effector memory T cells healthy healthy_4 chip0423_530928 PBMC +11074 CAgt??gaTW TRAV12-2*01 TRAJ38*01 HLA-A*02:01 B2M MHCI LLAGIGTVPI PGT HomoSapiens PMID:34811538 tetramer-sort yes amplicon-seq natural killer-like T cells T1D T1D_6 chip0423_591181 PBMC +11075 CASTGTSDSTDTQYF TRBV2*01 TRBJ2-3*01 HLA-A*01:01 B2M MHCI CTELKLSDY NP InfluenzaA PMID:34811538 tetramer-sort yes amplicon-seq transitional T cells between effector and memory populations healthy healthy_3 chip0423_260024 PBMC +11078 CASSSQSEQFF TRBV13*01 TRBJ2-1*01 HLA-A*01:01 B2M MHCI HSNLNDATY NP InfluenzaA PMID:34811538 tetramer-sort yes amplicon-seq Naive T cells healthy healthy_3 chip0423_176213 PBMC +11080 CASSAGSMGNYEQYF TRBV19*01 TRBJ2-7*01 HLA-A*02:01 B2M MHCI ALGIGILTV MART1 HomoSapiens PMID:34811538 tetramer-sort yes amplicon-seq transitional T cells between effector and memory populations T1D T1D_4 chip0423_473010 PBMC +11081 CASSYGVEQSF TRBV11-2*01 TRBJ2-1*01 HLA-A*02:01 B2M MHCI LLFNILGGWV NS4B HCV PMID:34811538 tetramer-sort yes amplicon-seq central memory T cells healthy healthy_3 chip0423_715661 PBMC +11082 GGQSETT??gEGSMLTF TRAV19*01 TRAJ39*01 CASSQEGQGAGELFF TRBV4-1*01 TRBJ2-2*01 HLA-A*01:01 B2M MHCI CTELKLSDY NP InfluenzaA PMID:34811538 tetramer-sort yes amplicon-seq effector T cells healthy healthy_3 chip0423_636108 PBMC +11084 CASSRGNTEAFF TRBV2*01 TRBJ1-1*01 HLA-A*02:01 B2M MHCI CLGGLLTMV LMP2A EBV PMID:34811538 tetramer-sort yes amplicon-seq central memory T cells T1D T1D_4 chip0423_689109 PBMC +11086 CAVAGSSDTGTLIF TRAV8-4*01 TRAJ37*01 HLA-A*02:01 B2M MHCI ILMHCQTTL GAD65 HomoSapiens PMID:34811538 tetramer-sort yes amplicon-seq Naive T cells healthy healthy_3 chip0423_679499 PBMC +11087 CASRDSGSNEQFF TRBV6-4*01 TRBJ2-1*01 HLA-A*01:01 B2M MHCI CTELKLSDY NP InfluenzaA PMID:34811538 tetramer-sort yes amplicon-seq natural killer-like T cells healthy healthy_3 chip0423_779369 PBMC +11088 CASSADSDYGYTF TRBV9*01 TRBJ1-2*01 HLA-A*02:01 B2M MHCI YLLEMLWRL LMP1 EBV PMID:34811538 tetramer-sort yes amplicon-seq transitional T cells between effector and memory populations T1D T1D_4 chip0423_394242 PBMC +11091 CASSLGMGQPQHF TRBV28*01 TRBJ1-5*01 HLA-A*02:01 B2M MHCI LLAGIGTVPI PGT HomoSapiens PMID:34811538 tetramer-sort yes amplicon-seq Naive T cells T1D T1D_4 chip0423_429800 PBMC +11093 CAMSLSNFGNEKLTF TRAV12-3*01 TRAJ48*01 HLA-A*02:01 B2M MHCI LLAGIGTVPI PGT HomoSapiens PMID:34811538 tetramer-sort yes amplicon-seq Naive T cells healthy healthy_3 chip0423_194470 PBMC +11094 CSAGTGDWGEQFF TRBV29-1*01 TRBJ2-1*01 HLA-B*08:01 B2M MHCI RAKFKQLL BZLF1 EBV PMID:34811538 tetramer-sort yes amplicon-seq effector memory T cells T1D T1D_4 chip0423_845174 PBMC +11096 CASSQGASGSFEETQYF TRBV4-1*01 TRBJ2-5*01 HLA-A*02:01 B2M MHCI GILGFVFTL M1 InfluenzaA PMID:34811538 tetramer-sort yes amplicon-seq effector T cells T1D T1D_6 chip0423_828497 PBMC +11097 CASSPLGSNEKLFF TRBV7-9*01 TRBJ1-4*01 HLA-B*08:01 B2M MHCI RAKFKQLL BZLF1 EBV PMID:34811538 tetramer-sort yes amplicon-seq transitional T cells between effector and memory populations T1D T1D_5 chip0423_381059 PBMC +11102 CAMRGGNtc??agGAQKLVF TRAV14/DV4*01 TRAJ54*01 CASSQPGGAGWTGELFF TRBV11-2*01 TRBJ2-2*01 HLA-B*08:01 B2M MHCI ILKLQVFL IAPP HomoSapiens PMID:34811538 tetramer-sort yes amplicon-seq Naive T cells T1D T1D_5 chip0423_444419 PBMC +11108 CALSEENa?gQCSTLIF TRAV19*01 TRAJ3*01 HLA-B*08:01 B2M MHCI RAKFKQLL BZLF1 EBV PMID:34811538 tetramer-sort yes amplicon-seq effector memory T cells healthy healthy_4 chip0423_439153 PBMC +11109 CAASAFFHg?gTGANNLFF TRAV29/DV5*01 TRAJ36*01 HLA-A*02:01 B2M MHCI ALAGIGILTV MART1 HomoSapiens PMID:34811538 tetramer-sort yes amplicon-seq Naive T cells T1D T1D_6 chip0423_540937 PBMC +11110 CAGAQVDSSYKLIF TRAV27*01 TRAJ12*01 CASSEVRDWGNNEQFF TRBV27*01 TRBJ2-1*01 HLA-A*02:01 B2M MHCI CLGGLLTMV LMP2A EBV PMID:34811538 tetramer-sort yes amplicon-seq transitional T cells between effector and memory populations healthy healthy_3 chip0423_51532 PBMC +11111 CAATSGTYKYIF TRAV29/DV5*01 TRAJ40*01 HLA-A*02:01 B2M MHCI ALAGIGILTV MART1 HomoSapiens PMID:34811538 tetramer-sort yes amplicon-seq Naive T cells T1D T1D_6 chip0423_737247 PBMC +11112 CAATLYDKIIF TRAV29/DV5*01 TRAJ30*01 HLA-B*08:01 B2M MHCI RAKFKQLL BZLF1 EBV PMID:34811538 tetramer-sort yes amplicon-seq effector T cells healthy healthy_4 chip0423_741525 PBMC +11114 CASSWLGDRYNSPLHF TRBV7-9*01 TRBJ1-6*01 HLA-B*08:01 B2M MHCI RAKFKQLL BZLF1 EBV PMID:34811538 tetramer-sort yes amplicon-seq transitional T cells between effector and memory populations T1D T1D_5 chip0423_1543 PBMC +11116 CASSYSSTGEYF TRBV6-2*01,TRBV6-3*01 TRBJ2-7*01 HLA-A*02:01 B2M MHCI YLLEMLWRL LMP1 EBV PMID:34811538 tetramer-sort yes amplicon-seq central memory T cells T1D T1D_4 chip0423_419643 PBMC +11117 CSVGSGEGYEQYF TRBV29-1*01 TRBJ2-7*01 HLA-B*08:01 B2M MHCI RAKFKQLL BZLF1 EBV PMID:34811538 tetramer-sort yes amplicon-seq effector T cells healthy healthy_4 chip0423_376613 PBMC +11119 CAPASGGSYIPTF TRAV24*01 TRAJ6*01 CASCRDGTYEQYF TRBV10-3*01 TRBJ2-7*01 HLA-A*01:01 B2M MHCI CTELKLSDY NP InfluenzaA PMID:34811538 tetramer-sort yes amplicon-seq transitional T cells between effector and memory populations healthy healthy_3 chip0423_22229 PBMC +11120 CVVNPRDNDYKLSF TRAV12-1*01 TRAJ20*01 CATSPTGGEETQYF TRBV24-1*01 TRBJ2-5*01 HLA-A*01:01 B2M MHCI LTSLTILQLY G6PC2 HomoSapiens PMID:34811538 tetramer-sort yes amplicon-seq Naive T cells T1D T1D_4 chip0423_309106 PBMC +11122 CASGLGVAYEQYF TRBV27*01 TRBJ2-7*01 HLA-A*01:01 B2M MHCI CTELKLSDY NP InfluenzaA PMID:34811538 tetramer-sort yes amplicon-seq transitional T cells between effector and memory populations healthy healthy_3 chip0423_512850 PBMC +11123 CILPLDGGIGYGRLTF TRAV26-2*01 TRAJ52*01 CASSLGQAYEQYF TRBV7-8*01 TRBJ2-7*01 HLA-B*08:01 B2M MHCI FLRGRAYGL EBNA3A EBV PMID:34811538 tetramer-sort yes amplicon-seq effector T cells T1D T1D_4 chip0423_802983 PBMC +11124 CALRTGNQFYF TRAV29/DV5*01 TRAJ49*01 HLA-B*08:01 B2M MHCI QAKWRLQTL EBNA3A EBV PMID:34811538 tetramer-sort yes amplicon-seq effector memory T cells T1D T1D_5 chip0423_94258 PBMC +11126 CASSTPRARGATEAFF TRBV11-2*01 TRBJ1-1*01 HLA-B*08:01 B2M MHCI ILKLQVFL IAPP HomoSapiens PMID:34811538 tetramer-sort yes amplicon-seq Naive T cells T1D T1D_5 chip0423_401508 PBMC +11127 CASRVGREPTGELFF TRBV3-1*01 TRBJ2-2*01 HLA-B*08:01 B2M MHCI RAKFKQLL BZLF1 EBV PMID:34811538 tetramer-sort yes amplicon-seq effector memory T cells healthy healthy_4 chip0423_61545 PBMC +11128 CASSLEPHGYTF TRBV5-4*01 TRBJ1-2*01 HLA-A*01:01 B2M MHCI CTELKLSDY NP InfluenzaA PMID:34811538 tetramer-sort yes amplicon-seq transitional T cells between effector and memory populations healthy healthy_3 chip0423_447810 PBMC +11129 CASCRDGTYEQYF TRBV10-3*01 TRBJ2-7*01 HLA-A*01:01 B2M MHCI CTELKLSDY NP InfluenzaA PMID:34811538 tetramer-sort yes amplicon-seq transitional T cells between effector and memory populations healthy healthy_3 chip0423_24225 PBMC +11130 CAAKETSYDKVIF TRAV13-1*01 TRAJ50*01 HLA-B*08:01 B2M MHCI RAKFKQLL BZLF1 EBV PMID:34811538 tetramer-sort yes amplicon-seq effector memory T cells T1D T1D_5 chip0423_757197 PBMC +11134 CVVKGAa?cTGKLLF TRAV8-2*01 TRAJ37*01 HLA-A*01:01 B2M MHCI STNVGSNTY IAPP HomoSapiens PMID:34811538 tetramer-sort yes amplicon-seq Naive T cells healthy healthy_3 chip0423_512510 PBMC +11135 CAPGGASGSSTLTF TRAV17*01 TRAJ11*01 HLA-A*02:01 B2M MHCI FLYALALLL LMP2 EBV PMID:34811538 tetramer-sort yes amplicon-seq central memory T cells T1D T1D_6 chip0423_849803 PBMC +11138 CASSLEGQASSYEQYF TRBV5-1*01 TRBJ2-7*01 HLA-A*02:01 B2M MHCI CLGGLLTMV LMP2A EBV PMID:34811538 tetramer-sort yes amplicon-seq effector memory T cells T1D T1D_4 chip0423_873389 PBMC +11140 CARSLPPW??gAAYNEQFF TRBV4-3*01 TRBJ2-1*01 HLA-B*08:01 B2M MHCI FLRGRAYGL EBNA3A EBV PMID:34811538 tetramer-sort yes amplicon-seq effector T cells T1D T1D_6 chip0423_72484 PBMC +11142 CASSLPGag??gaTGYEQFF TRBV4-3*01 TRBJ2-1*01 HLA-A*02:01 B2M MHCI LVGPTPVNI POL HIV-1 PMID:34811538 tetramer-sort yes amplicon-seq central memory T cells healthy healthy_3 chip0423_538934 PBMC +11143 CAVDTIDRGSTLGRLYF TRAV39*01 TRAJ18*01 HLA-A*02:01 B2M MHCI GILGFVFTL M1 InfluenzaA PMID:34811538 tetramer-sort yes amplicon-seq effector T cells healthy healthy_3 chip0423_782419 PBMC +11145 CALTDSWGKLQF TRAV12-2*01 TRAJ24*01 HLA-A*02:01 B2M MHCI VMNILLQYV GAD65 HomoSapiens PMID:34811538 tetramer-sort yes amplicon-seq effector T cells healthy healthy_3 chip0423_637476 PBMC +11146 CASSDDGMNTEAFF TRBV10-2*01 TRBJ1-1*01 HLA-A*02:01 B2M MHCI CLGGLLTMV LMP2A EBV PMID:34811538 tetramer-sort yes amplicon-seq central memory T cells T1D T1D_4 chip0423_286804 PBMC +11147 CSVGTADGYTF TRBV29-1*01 TRBJ1-2*01 HLA-B*08:01 B2M MHCI RAKFKQLL BZLF1 EBV PMID:34811538 tetramer-sort yes amplicon-seq effector T cells T1D T1D_5 chip0423_299034 PBMC +11148 CASTQVDRPNYGYTF TRBV7-9*01 TRBJ1-2*01 HLA-B*08:01 B2M MHCI RAKFKQLL BZLF1 EBV PMID:34811538 tetramer-sort yes amplicon-seq effector memory T cells T1D T1D_5 chip0423_555860 PBMC +11151 CASSLRGNWGDTQYF TRBV28*01 TRBJ2-3*01 HLA-A*01:01 B2M MHCI VTDAAHLLI ZNT8 HomoSapiens PMID:34811538 tetramer-sort yes amplicon-seq Naive T cells T1D T1D_6 chip0423_834922 PBMC +11152 CAAPLVAGNKLTF TRAV13-1*01 TRAJ17*01 HLA-B*08:01 B2M MHCI FLRGRAYGL EBNA3A EBV PMID:34811538 tetramer-sort yes amplicon-seq effector T cells healthy healthy_4 chip0423_169347 PBMC +11154 CAVRILPNFGNEKLTF TRAV21*01 TRAJ48*01 HLA-B*08:01 B2M MHCI QAKWRLQTL EBNA3A EBV PMID:34811538 tetramer-sort yes amplicon-seq effector memory T cells T1D T1D_6 chip0423_236746 PBMC +11156 CASSSPSGGYNEQFF TRBV6-1*01 TRBJ2-1*01 HLA-A*02:01 B2M MHCI ALAGIGILTV MART1 HomoSapiens PMID:34811538 tetramer-sort yes amplicon-seq Naive T cells healthy healthy_3 chip0423_657868 PBMC +11157 CASSLTAGQGVYEQYF TRBV7-2*01 TRBJ2-7*01 HLA-B*08:01 B2M MHCI YVMVTAAL G6PC2 HomoSapiens PMID:34811538 tetramer-sort yes amplicon-seq Naive T cells T1D T1D_4 chip0423_469591 PBMC +11159 CILLVLAca?FSCYALNF TRAV26-2*01 TRAJ41*01 CASSQDIRPGGLDTEAFF TRBV3-1*01 TRBJ1-1*01 HLA-A*02:01 B2M MHCI LLAGIGTVPI PGT HomoSapiens PMID:34811538 tetramer-sort yes amplicon-seq Naive T cells T1D T1D_6 chip0423_245822 PBMC +11160 CILPLAGGTSYGKLTF TRAV26-2*01 TRAJ52*01 CSAGRDGTNENLFF TRBV29-1*01 TRBJ1-4*01 HLA-B*08:01 B2M MHCI FLRGRAYGL EBNA3A EBV PMID:34811538 tetramer-sort yes amplicon-seq effector memory T cells T1D T1D_6 chip0423_510326 PBMC +11161 CASSYSAGFTGELFF TRBV6-5*01 TRBJ2-2*01 HLA-A*02:01 B2M MHCI YVLDHLIVV BRLF1 EBV PMID:34811538 tetramer-sort yes amplicon-seq effector memory T cells healthy healthy_4 chip0423_667080 PBMC +11162 CAWGNSGCGTLTF TRAV12-2*01 TRAJ11*01 CASSGLQGLETQYF TRBV5-5*01 TRBJ2-5*01 HLA-A*02:01 B2M MHCI LLAGIGTVPI PGT HomoSapiens PMID:34811538 tetramer-sort yes amplicon-seq effector T cells healthy healthy_3 chip0423_164883 PBMC +11163 CAWSVPGEEEKLFF TRBV30*01 TRBJ1-4*01 HLA-B*08:01 B2M MHCI RAKFKQLL BZLF1 EBV PMID:34811538 tetramer-sort yes amplicon-seq effector memory T cells T1D T1D_5 chip0423_244634 PBMC +11164 CAGCYPRAGSALQPQHF TRBV6-5*01 TRBJ1-5*01 HLA-A*01:01 B2M MHCI LVSDGGPNLY PB1 InfluenzaA PMID:34811538 tetramer-sort yes amplicon-seq Naive T cells healthy healthy_5 chip0423_600919 PBMC +11165 CASRVGREPTGELFF TRBV3-1*01 TRBJ2-2*01 HLA-B*08:01 B2M MHCI RAKFKQLL BZLF1 EBV PMID:34811538 tetramer-sort yes amplicon-seq transitional T cells between effector and memory populations healthy healthy_4 chip0423_12872 PBMC +11166 CATSGGYQKVTF TRAV12-1*01 TRAJ13*01 CASSLGQAYEQYF TRBV7-8*01 TRBJ2-7*01 HLA-A*02:01 B2M MHCI LLAGIGTVPI PGT HomoSapiens PMID:34811538 tetramer-sort yes amplicon-seq Naive T cells T1D T1D_4 chip0423_761678 PBMC +11167 CSARDRGSENTGELFF TRBV20-1*01 TRBJ2-2*01 HLA-B*08:01 B2M MHCI RAKFKQLL BZLF1 EBV PMID:34811538 tetramer-sort yes amplicon-seq effector T cells healthy healthy_4 chip0423_660241 PBMC +11168 CVVNGENARLLF TRAV12-1*01 TRAJ31*01 CASSEMWGAPLHF TRBV2*01 TRBJ1-6*01 HLA-A*01:01 B2M MHCI CTELKLSDY NP InfluenzaA PMID:34811538 tetramer-sort yes amplicon-seq transitional T cells between effector and memory populations healthy healthy_3 chip0423_675021 PBMC +11169 CASSPLGSNEKLFF TRBV7-9*01 TRBJ1-4*01 HLA-B*08:01 B2M MHCI RAKFKQLL BZLF1 EBV PMID:34811538 tetramer-sort yes amplicon-seq effector T cells T1D T1D_5 chip0423_828674 PBMC +11170 CASSLVGDGLEAFF TRBV11-3*01 TRBJ1-1*01 HLA-A*02:01 B2M MHCI LLAGIGTVPI PGT HomoSapiens PMID:34811538 tetramer-sort yes amplicon-seq transitional T cells between effector and memory populations healthy healthy_3 chip0423_608963 PBMC +11171 CASSSTERNAGEQFF TRBV12-3*01,TRBV12-4*01 TRBJ2-1*01 HLA-A*02:01 B2M MHCI LLAGIGTVPI PGT HomoSapiens PMID:34811538 tetramer-sort yes amplicon-seq Naive T cells healthy healthy_3 chip0423_560279 PBMC +11172 CILPLAGGASYGKLTF TRAV26-2*01 TRAJ52*01 CASSGVGTDGELFF TRBV7-8*01 TRBJ2-2*01 HLA-A*02:01 B2M MHCI LLAGIGTVPI PGT HomoSapiens PMID:34811538 tetramer-sort yes amplicon-seq Naive T cells T1D T1D_4 chip0423_708013 PBMC +11173 CATSDLSGYEQYF TRBV24-1*01 TRBJ2-7*01 HLA-B*08:01 B2M MHCI RAKFKQLL BZLF1 EBV PMID:34811538 tetramer-sort yes amplicon-seq transitional T cells between effector and memory populations T1D T1D_5 chip0423_61785 PBMC +11174 CASSLAVREGPQHF TRBV7-9*01 TRBJ1-5*01 HLA-B*08:01 B2M MHCI RAKFKQLL BZLF1 EBV PMID:34811538 tetramer-sort yes amplicon-seq effector T cells T1D T1D_4 chip0423_206608 PBMC +11176 CASRPLLGGGYAQYL TRBV6-1*01 TRBJ2-7*01 HLA-A*02:01 B2M MHCI YVLDHLIVV BRLF1 EBV PMID:34811538 tetramer-sort yes amplicon-seq effector T cells healthy healthy_3 chip0423_634678 PBMC +11177 CAVLMDSNYQLIW TRAV21*01 TRAJ33*01 HLA-A*02:01 B2M MHCI CLGGLLTMV LMP2A EBV PMID:34811538 tetramer-sort yes amplicon-seq central memory T cells healthy healthy_3 chip0423_705168 PBMC +11178 CAVNNDMRF TRAV12-2*01 TRAJ43*01 HLA-A*02:01 B2M MHCI LNIDLLWSV IGRP HomoSapiens PMID:34811538 tetramer-sort yes amplicon-seq Naive T cells healthy healthy_4 chip0423_308703 PBMC +11180 CALSGSQGNLIF TRAV3*01 TRAJ42*01 CASSSRSSYEQYF TRBV19*01 TRBJ2-7*01 HLA-A*02:01 B2M MHCI GILGFVFTL M1 InfluenzaA PMID:34811538 tetramer-sort yes amplicon-seq transitional T cells between effector and memory populations healthy healthy_3 chip0423_779367 PBMC +11181 CASSETGSSYEQYF TRBV10-2*01 TRBJ2-7*01 HLA-A*01:01 B2M MHCI LTSLTILQLY G6PC2 HomoSapiens PMID:34811538 tetramer-sort yes amplicon-seq Naive T cells healthy healthy_3 chip0423_218628 PBMC +11182 CAVLPSNDYKLSF TRAV12-2*01,TRAV21*01 TRAJ20*01 CASSHTQDIPNYGYTF TRBV12-3*01,TRBV12-4*01 TRBJ1-2*01 HLA-B*08:01 B2M MHCI RAKFKQLL BZLF1 EBV PMID:34811538 tetramer-sort yes amplicon-seq effector memory T cells T1D T1D_5 chip0423_105918 PBMC +11183 CAPGEGGKLIF TRAV12-1*01 TRAJ23*01 HLA-A*02:01 B2M MHCI LLAGIGTVPI PGT HomoSapiens PMID:34811538 tetramer-sort yes amplicon-seq Naive T cells healthy healthy_3 chip0423_824597 PBMC +11184 CASSPSGATQPQHF TRBV19*01 TRBJ1-5*01 HLA-A*02:01 B2M MHCI GILGFVFTL M1 InfluenzaA PMID:34811538 tetramer-sort yes amplicon-seq effector T cells healthy healthy_3 chip0423_797599 PBMC +11185 CASSFWMNTGELFF TRBV7-3*01 TRBJ2-2*01 HLA-B*08:01 B2M MHCI RAKFKQLL BZLF1 EBV PMID:34811538 tetramer-sort yes amplicon-seq effector T cells T1D T1D_5 chip0423_299375 PBMC +11188 CSVARGPKKARSQPQHF TRBV20-1*01 TRBJ1-5*01 HLA-A*02:01 B2M MHCI LLAGIGTVPI PGT HomoSapiens PMID:34811538 tetramer-sort yes amplicon-seq Naive T cells healthy healthy_3 chip0423_313344 PBMC +11189 CLVTWAPSct??ttGGSDTLLF TRAV4*01 TRAJ4*01 CASSFALAEYNEQFF TRBV12-3*01,TRBV12-4*01 TRBJ2-1*01 HLA-B*08:01 B2M MHCI HARIKLKV PTPRN HomoSapiens PMID:34811538 tetramer-sort yes amplicon-seq Naive T cells T1D T1D_6 chip0423_188987 PBMC +11190 CASMTGYGYTF TRBV28*01 TRBJ1-2*01 HLA-A*02:01 B2M MHCI ALAGIGILTV MART1 HomoSapiens PMID:34811538 tetramer-sort yes amplicon-seq Naive T cells healthy healthy_3 chip0423_669992 PBMC +11191 CAVRFSGYGTLTF TRAV1-2*01 TRAJ11*01 CASSLGGGEGASEQFF TRBV7-6*01 TRBJ2-1*01 HLA-A*01:01 B2M MHCI LTSFLLSLF ZNT8 HomoSapiens PMID:34811538 tetramer-sort yes amplicon-seq Naive T cells healthy healthy_5 chip0423_134914 PBMC +11193 CARSLTVLAGPNTDAFF TRBV7-3*01 TRBJ1-1*01 HLA-B*08:01 B2M MHCI RAKFKQLL BZLF1 EBV PMID:34811538 tetramer-sort yes amplicon-seq effector T cells T1D T1D_4 chip0423_729681 PBMC +11194 CASSGGQGVPYEQYF TRBV5-1*01 TRBJ2-7*01 HLA-A*02:01 B2M MHCI LLAGIGTVPI PGT HomoSapiens PMID:34811538 tetramer-sort yes amplicon-seq Naive T cells T1D T1D_4 chip0423_592512 PBMC +11195 CASSLLGRSNTEAFF TRBV7-9*01 TRBJ1-1*01 HLA-B*08:01 B2M MHCI RAKFKQLL BZLF1 EBV PMID:34811538 tetramer-sort yes amplicon-seq effector memory T cells T1D T1D_5 chip0423_353011 PBMC +11196 CASSCGQAYEQYL TRBV7-8*01 TRBJ2-7*01 HLA-B*08:01 B2M MHCI FLRGRAYGL EBNA3A EBV PMID:34811538 tetramer-sort yes amplicon-seq effector T cells healthy healthy_4 chip0423_490327 PBMC +11197 CAVEDQGRSYNTDKLIF TRAV2*01 TRAJ34*01 HLA-B*08:01 B2M MHCI RAKFKQLL BZLF1 EBV PMID:34811538 tetramer-sort yes amplicon-seq effector T cells healthy healthy_4 chip0423_513709 PBMC +11199 CASNRGYTDTQYF TRBV12-3*01,TRBV12-4*01 TRBJ2-3*01 HLA-A*02:01 B2M MHCI TLLANVTAV VP6 RotavirusA PMID:34811538 tetramer-sort yes amplicon-seq transitional T cells between effector and memory populations T1D T1D_6 chip0423_572945 PBMC +11200 CASSLNVEEGAGNTIYF TRBV7-6*01 TRBJ1-3*01 HLA-B*08:01 B2M MHCI RAKFKQLL BZLF1 EBV PMID:34811538 tetramer-sort yes amplicon-seq effector memory T cells healthy healthy_4 chip0423_489998 PBMC +11201 CAMRAIEGANNLFF TRAV14/DV4*01 TRAJ36*01 CASTSGRVVDEQFF TRBV6-1*01 TRBJ2-1*01 HLA-B*08:01 B2M MHCI RAKFKQLL BZLF1 EBV PMID:34811538 tetramer-sort yes amplicon-seq effector T cells T1D T1D_5 chip0423_481942 PBMC +11202 CAVQGGADGLTF TRAV12-2*01 TRAJ45*01 HLA-A*02:01 B2M MHCI LLAGIGTVPI PGT HomoSapiens PMID:34811538 tetramer-sort yes amplicon-seq Naive T cells healthy healthy_4 chip0423_124941 PBMC +11205 CASSADSDYGYTF TRBV9*01 TRBJ1-2*01 HLA-A*02:01 B2M MHCI YLLEMLWRL LMP1 EBV PMID:34811538 tetramer-sort yes amplicon-seq effector memory T cells T1D T1D_4 chip0423_438073 PBMC +11206 CAASNNNARLMF TRAV13-1*01 TRAJ31*01 CASSLSGQPQHF TRBV7-9*01 TRBJ1-5*01 HLA-A*01:01 B2M MHCI HSNLNDATY NP InfluenzaA PMID:34811538 tetramer-sort yes amplicon-seq Naive T cells T1D T1D_4 chip0423_458148 PBMC +11207 CASSLVGVDSSTDTQYF TRBV28*01 TRBJ2-3*01 HLA-A*02:01 B2M MHCI LLAGIGTVPI PGT HomoSapiens PMID:34811538 tetramer-sort yes amplicon-seq Naive T cells T1D T1D_6 chip0423_6438 PBMC +11208 CASRLAPHGYTF TRBV5-4*01 TRBJ1-2*01 HLA-A*01:01 B2M MHCI CTELKLSDY NP InfluenzaA PMID:34811538 tetramer-sort yes amplicon-seq effector T cells healthy healthy_3 chip0423_775802 PBMC +11209 GASSEWPTSYEQYF TRBV6-1*01 TRBJ2-7*01 HLA-B*08:01 B2M MHCI WPTVRERM Nef HIV-1 PMID:34811538 tetramer-sort yes amplicon-seq Naive T cells T1D T1D_4 chip0423_879612 PBMC +11210 CAFATHCWtg??gtTSCGWLTY TRAV14/DV4*01 TRAJ52*01 HLA-A*01:01 B2M MHCI CTELKLSDY NP InfluenzaA PMID:34811538 tetramer-sort yes amplicon-seq central memory T cells healthy healthy_3 chip0423_713958 PBMC +11211 CAVSVGVGAQKLVF TRAV8-6*01 TRAJ54*01 HLA-B*08:01 B2M MHCI RAKFKQLL BZLF1 EBV PMID:34811538 tetramer-sort yes amplicon-seq effector memory T cells T1D T1D_4 chip0423_387531 PBMC +11213 CAVGNTGKLIF TRAV8-1*01 TRAJ37*01 CASLGLALGSYNEQFF TRBV27*01 TRBJ2-1*01 HLA-A*02:01 B2M MHCI YVLDHLIVV BRLF1 EBV PMID:34811538 tetramer-sort yes amplicon-seq effector T cells healthy healthy_3 chip0423_207736 PBMC +11214 CASSQVNNPGDGYTF TRBV14*01 TRBJ1-2*01 HLA-B*08:01 B2M MHCI QAKWRLQTL EBNA3A EBV PMID:34811538 tetramer-sort yes amplicon-seq effector T cells T1D T1D_4 chip0423_484493 PBMC +11216 CASSHTGTQETQYF TRBV4-1*01 TRBJ2-5*01 HLA-A*02:01 B2M MHCI LLAGIGTVPI PGT HomoSapiens PMID:34811538 tetramer-sort yes amplicon-seq Naive T cells healthy healthy_4 chip0423_215925 PBMC +11218 CAEMETSYDKVIF TRAV13-2*01 TRAJ50*01 CASSSLSGGAGNEQFF TRBV7-9*01 TRBJ2-1*01 HLA-B*08:01 B2M MHCI RAKFKQLL BZLF1 EBV PMID:34811538 tetramer-sort yes amplicon-seq effector T cells T1D T1D_5 chip0423_14488 PBMC +11220 CAAPYTGTASKLSF TRAV29/DV5*01 TRAJ44*01 CASSPGQANVLTF TRBV27*01 TRBJ2-6*01 HLA-A*02:01 B2M MHCI ALAGIGILTV MART1 HomoSapiens PMID:34811538 tetramer-sort yes amplicon-seq Naive T cells T1D T1D_6 chip0423_430290 PBMC +11221 CASSKQGGQPQHF TRBV28*01 TRBJ1-5*01 HLA-B*08:01 B2M MHCI QAKWRLQTL EBNA3A EBV PMID:34811538 tetramer-sort yes amplicon-seq transitional T cells between effector and memory populations T1D T1D_6 chip0423_453335 PBMC +11222 CAPASGGSYVPPF TRAV24*01 TRAJ6*01 CASCRDGTYEQYF TRBV10-3*01 TRBJ2-7*01 HLA-A*01:01 B2M MHCI CTELKLSDY NP InfluenzaA PMID:34811538 tetramer-sort yes amplicon-seq transitional T cells between effector and memory populations healthy healthy_3 chip0423_280735 PBMC +11223 CAGALGGGSQGNLMF TRAV27*01 TRAJ42*01 CASSIRSGYEQFF TRBV19*01 TRBJ2-1*01 HLA-A*02:01 B2M MHCI GILGFVFTL M1 InfluenzaA PMID:34811538 tetramer-sort yes amplicon-seq transitional T cells between effector and memory populations healthy healthy_3 chip0423_877999 PBMC +11224 CASSSGQAYEQYF TRBV7-8*01 TRBJ2-7*01 HLA-B*08:01 B2M MHCI FLRGRAYGL EBNA3A EBV PMID:34811538 tetramer-sort yes amplicon-seq effector memory T cells healthy healthy_4 chip0423_128964 PBMC +11226 CAVGIGTALIF TRAV12-2*01 TRAJ15*01 HLA-A*02:01 B2M MHCI GILGFVFTL M1 InfluenzaA PMID:34811538 tetramer-sort yes amplicon-seq transitional T cells between effector and memory populations healthy healthy_3 chip0423_227935 PBMC +11227 SSASEGa?tCQMLLF TRAV13-1*01 TRAJ16*01 CASSFPGQGIHEQFF TRBV7-2*01 TRBJ2-1*01 HLA-B*08:01 B2M MHCI MALWMRLL INS HomoSapiens PMID:34811538 tetramer-sort yes amplicon-seq Naive T cells healthy healthy_5 chip0423_610200 PBMC +11229 CAGLGTSGTYKYLF TRAV25*01 TRAJ40*01 CSVDLSTAFF TRBV29-1*01 TRBJ1-1*01 HLA-A*01:01 B2M MHCI STNVGSNTY IAPP HomoSapiens PMID:34811538 tetramer-sort yes amplicon-seq Naive T cells T1D T1D_5 chip0423_469224 PBMC +11230 CAASETSYDKVIF TRAV13-1*01 TRAJ50*01 HLA-B*08:01 B2M MHCI RAKFKQLL BZLF1 EBV PMID:34811538 tetramer-sort yes amplicon-seq effector memory T cells T1D T1D_5 chip0423_769400 PBMC +11232 CASSQDGLAATSTDTQYF TRBV4-1*01 TRBJ2-3*01 HLA-A*01:01 B2M MHCI CTELKLSDY NP InfluenzaA PMID:34811538 tetramer-sort yes amplicon-seq transitional T cells between effector and memory populations healthy healthy_3 chip0423_452616 PBMC +11233 CASCSSASKIFF TRAV9-2*01 TRAJ3*01 CASSGPHANYGYTF TRBV9*01 TRBJ1-2*01 HLA-A*01:01 B2M MHCI CTELKLSDY NP InfluenzaA PMID:34811538 tetramer-sort yes amplicon-seq effector memory T cells healthy healthy_3 chip0423_295413 PBMC +11234 CAVEKKNTDKLIF TRAV21*01 TRAJ34*01 CASSLSHPPGNTIYL TRBV13*01 TRBJ1-3*01 HLA-B*08:01 B2M MHCI RAKFKQLL BZLF1 EBV PMID:34811538 tetramer-sort yes amplicon-seq effector T cells healthy healthy_4 chip0423_580190 PBMC +11235 CASSELGDTQYF TRBV25-1*01 TRBJ2-3*01 HLA-A*02:01 B2M MHCI GILGFVFTL M1 InfluenzaA PMID:34811538 tetramer-sort yes amplicon-seq central memory T cells healthy healthy_4 chip0423_471723 PBMC +11239 CASCSSASKIFF TRAV9-2*01 TRAJ3*01 CASRAPPAPYGYTF TRBV9*01 TRBJ1-2*01 HLA-A*01:01 B2M MHCI CTELKLSDY NP InfluenzaA PMID:34811538 tetramer-sort yes amplicon-seq effector memory T cells healthy healthy_3 chip0423_652012 PBMC +11242 CILPLAGGTSYGKLTF TRAV26-2*01 TRAJ52*01 CASKPGQGGYEQYF TRBV6-1*01 TRBJ2-7*01 HLA-B*08:01 B2M MHCI FLRGRAYGL EBNA3A EBV PMID:34811538 tetramer-sort yes amplicon-seq effector T cells T1D T1D_6 chip0423_3356 PBMC +11244 CAVPGGCLGFLLF TRAV8-3*01 TRAJ42*01 HLA-A*02:01 B2M MHCI YLLEMLWRL LMP1 EBV PMID:34811538 tetramer-sort yes amplicon-seq central memory T cells T1D T1D_4 chip0423_568337 PBMC +11246 CAASMGYGNKLVF TRAV13-1*01 TRAJ47*01 HLA-A*01:01 B2M MHCI CTELKLSDY NP InfluenzaA PMID:34811538 tetramer-sort yes amplicon-seq effector T cells healthy healthy_3 chip0423_581514 PBMC +11248 CAGPALNAGNTRSLLW TRAV25*01 TRAJ38*01 HLA-A*02:01 B2M MHCI CINGVCWTV NS3 HCV PMID:34811538 tetramer-sort yes amplicon-seq Naive T cells T1D T1D_6 chip0423_791436 PBMC +11250 WASTSPGVLGGEAFF TRBV7-8*01 TRBJ1-1*01 HLA-B*08:01 B2M MHCI RAKFKQLL BZLF1 EBV PMID:34811538 tetramer-sort yes amplicon-seq effector memory T cells healthy healthy_4 chip0423_143006 PBMC +11252 CAPQRGSQGNLIF TRAV12-2*01 TRAJ42*01 HLA-A*02:01 B2M MHCI ALAGIGILTV MART1 HomoSapiens PMID:34811538 tetramer-sort yes amplicon-seq Naive T cells healthy healthy_3 chip0423_309088 PBMC +11254 CAVSDGEGAQKLVF TRAV8-6*01 TRAJ54*01 HLA-B*08:01 B2M MHCI RAKFKQLL BZLF1 EBV PMID:34811538 tetramer-sort yes amplicon-seq Naive T cells healthy healthy_5 chip0423_234943 PBMC +11260 CASSQWRDRGLHTGELFF TRBV3-1*01 TRBJ2-2*01 HLA-A*02:01 B2M MHCI LNIDLLWSV IGRP HomoSapiens PMID:34811538 tetramer-sort yes amplicon-seq Naive T cells healthy healthy_4 chip0423_538785 PBMC +11264 CASSQEVTDTQYF TRBV4-3*01 TRBJ2-3*01 HLA-A*02:01 B2M MHCI YLLEMLWRL LMP1 EBV PMID:34811538 tetramer-sort yes amplicon-seq central memory T cells T1D T1D_4 chip0423_352961 PBMC +11267 CAASETSYDKVIF TRAV13-1*01 TRAJ50*01 CASSTTRAGTWPLHF TRBV7-9*01 TRBJ1-6*01 HLA-B*08:01 B2M MHCI RAKFKQLL BZLF1 EBV PMID:34811538 tetramer-sort yes amplicon-seq effector memory T cells healthy healthy_4 chip0423_34386 PBMC +11268 CAVGSPNFGGREGFVIF TRAV36/DV7*01 TRAJ42*01 CASSPSSLDAHFPLYNSPLHF TRBV28*01 TRBJ1-6*01 HLA-A*01:01 B2M MHCI CTELKLSDY NP InfluenzaA PMID:34811538 tetramer-sort yes amplicon-seq effector T cells healthy healthy_3 chip0423_94096 PBMC +11274 CASSLSPAGDYNEQFF TRBV18*01 TRBJ2-1*01 HLA-A*01:01 B2M MHCI CTELKLSDY NP InfluenzaA PMID:34811538 tetramer-sort yes amplicon-seq transitional T cells between effector and memory populations healthy healthy_3 chip0423_246243 PBMC +11276 CTMSVSNFGNEKLTF TRAV12-3*01 TRAJ48*01 CASNRGITGELFF TRBV5-1*01 TRBJ2-2*01 HLA-A*02:01 B2M MHCI LLAGIGTVPI PGT HomoSapiens PMID:34811538 tetramer-sort yes amplicon-seq Naive T cells healthy healthy_4 chip0423_58133 PBMC +11279 CASSPLLATQGYEQYF TRBV19*01 TRBJ2-7*01 HLA-A*01:01 B2M MHCI CTELKLSDY NP InfluenzaA PMID:34811538 tetramer-sort yes amplicon-seq transitional T cells between effector and memory populations healthy healthy_3 chip0423_648897 PBMC +11280 CASSWGSYNEQFF TRBV5-1*01 TRBJ2-1*01 HLA-A*02:01 B2M MHCI LLAGIGTVPI PGT HomoSapiens PMID:34811538 tetramer-sort yes amplicon-seq Naive T cells healthy healthy_3 chip0423_641199 PBMC +11282 CASSFTGSSGNTIYF TRBV12-3*01,TRBV12-4*01 TRBJ1-3*01 HLA-B*08:01 B2M MHCI RAKFKQLL BZLF1 EBV PMID:34811538 tetramer-sort yes amplicon-seq effector memory T cells T1D T1D_5 chip0423_83702 PBMC +11286 CAVLPSNDYTLSF TRAV21*01,TRAV12-3*01 TRAJ20*01 HLA-A*01:01 B2M MHCI CTELKLSDY NP InfluenzaA PMID:34811538 tetramer-sort yes amplicon-seq transitional T cells between effector and memory populations healthy healthy_3 chip0423_61254 PBMC +11287 CAVNSGNTPLVF TRAV1-2*01 TRAJ29*01 CASSLGQAYEQYF TRBV7-8*01 TRBJ2-7*01 HLA-B*08:01 B2M MHCI QAKWRLQTL EBNA3A EBV PMID:34811538 tetramer-sort yes amplicon-seq effector memory T cells T1D T1D_4 chip0423_295499 PBMC +11289 CSVEWAFDYTF TRBV29-1*01 TRBJ1-2*01 HLA-A*01:01 B2M MHCI LVSDGGPNLY PB1 InfluenzaA PMID:34811538 tetramer-sort yes amplicon-seq transitional T cells between effector and memory populations healthy healthy_3 chip0423_371262 PBMC +11290 CASRGEAFGRTGELFF TRBV12-3*01,TRBV12-4*01 TRBJ2-2*01 HLA-A*01:01 B2M MHCI LVSDGGPNLY PB1 InfluenzaA PMID:34811538 tetramer-sort yes amplicon-seq Naive T cells healthy healthy_5 chip0423_808553 PBMC +11295 CASSQVQGGPEAFF TRBV14*01 TRBJ1-1*01 HLA-A*01:01 B2M MHCI HSNLNDATY NP InfluenzaA PMID:34811538 tetramer-sort yes amplicon-seq Naive T cells T1D T1D_6 chip0423_1515 PBMC +11298 CASSMFMISGNTIYF TRBV19*01 TRBJ1-3*01 HLA-A*02:01 B2M MHCI GILGFVFTL M1 InfluenzaA PMID:34811538 tetramer-sort yes amplicon-seq Naive T cells T1D T1D_6 chip0423_256575 PBMC +11299 CASSEPGRVDTQYF TRBV10-2*01 TRBJ2-3*01 HLA-A*02:01 B2M MHCI LLIDLTSFL ZNT8 HomoSapiens PMID:34811538 tetramer-sort yes amplicon-seq central memory T cells healthy healthy_3 chip0423_348718 PBMC +11303 CSAIPANFSSYNEQFF TRBV20-1*01 TRBJ2-1*01 HLA-A*02:01 B2M MHCI LLAGIGTVPI PGT HomoSapiens PMID:34811538 tetramer-sort yes amplicon-seq Naive T cells healthy healthy_3 chip0423_557533 PBMC +11308 CASSSDGMNTEAFF TRBV10-2*01 TRBJ1-1*01 HLA-A*02:01 B2M MHCI CLGGLLTMV LMP2A EBV PMID:34811538 tetramer-sort yes amplicon-seq central memory T cells healthy healthy_4 chip0423_416337 PBMC +11314 CASSYGVRGPTAAFF TRBV6-5*01 TRBJ1-1*01 HLA-A*01:01 B2M MHCI VTDAAHLLI ZNT8 HomoSapiens PMID:34811538 tetramer-sort yes amplicon-seq Naive T cells healthy healthy_3 chip0423_537563 PBMC +11316 CAMSASNFGNEKLTF TRAV12-3*01 TRAJ48*01 CASSQGVPGTEAFF TRBV14*01 TRBJ1-1*01 HLA-A*02:01 B2M MHCI LLAGIGTVPI PGT HomoSapiens PMID:34811538 tetramer-sort yes amplicon-seq Naive T cells healthy healthy_3 chip0423_694064 PBMC +11319 CATGRGGSGKVTF TRAV12-2*01 TRAJ13*01 HLA-A*02:01 B2M MHCI LLAGIGTVPI PGT HomoSapiens PMID:34811538 tetramer-sort yes amplicon-seq Naive T cells healthy healthy_3 chip0423_495552 PBMC +11323 CAVSDGEGAQKLVF TRAV8-6*01 TRAJ54*01 HLA-B*08:01 B2M MHCI RAKFKQLL BZLF1 EBV PMID:34811538 tetramer-sort yes amplicon-seq effector T cells T1D T1D_4 chip0423_170821 PBMC +11325 CASSRAGPGNQPQHF TRBV7-9*01 TRBJ1-5*01 HLA-B*08:01 B2M MHCI RAKFKQLL BZLF1 EBV PMID:34811538 tetramer-sort yes amplicon-seq Naive T cells healthy healthy_4 chip0423_352515 PBMC +11328 CAPVPG??tNRKLTF TRAV41*01 TRAJ56*01 CASSQDGYGGDQPQHF TRBV4-1*01 TRBJ1-5*01 HLA-A*01:01 B2M MHCI CTELKLSDY NP InfluenzaA PMID:34811538 tetramer-sort yes amplicon-seq transitional T cells between effector and memory populations healthy healthy_3 chip0423_768236 PBMC +11333 CSASEQGLAGGTFYEQYF TRBV20-1*01 TRBJ2-7*01 HLA-B*08:01 B2M MHCI RAKFKQLL BZLF1 EBV PMID:34811538 tetramer-sort yes amplicon-seq effector T cells healthy healthy_4 chip0423_374835 PBMC +11335 CASSELVNEQFF TRBV2*01 TRBJ2-1*01 HLA-A*02:01 B2M MHCI LLAGIGTVPI PGT HomoSapiens PMID:34811538 tetramer-sort yes amplicon-seq Naive T cells healthy healthy_3 chip0423_120002 PBMC +11337 CAVRENTNAGKSTF TRAV1-1*01 TRAJ27*01 CASSYSSAGGNEQYF TRBV6-5*01 TRBJ2-7*01 HLA-A*02:01 B2M MHCI LLAGIGTVPI PGT HomoSapiens PMID:34811538 tetramer-sort yes amplicon-seq effector memory T cells healthy healthy_3 chip0423_85023 PBMC +11338 CASSYGPDEQYF TRBV6-2*01,TRBV6-3*01 TRBJ2-7*01 HLA-A*02:01 B2M MHCI YVLDHLIVV BRLF1 EBV PMID:34811538 tetramer-sort yes amplicon-seq Naive T cells T1D T1D_4 chip0423_718599 PBMC +11341 CSVEGWAGGSYEQYS TRBV29-1*01 TRBJ2-7*01 HLA-B*08:01 B2M MHCI HPRYFNQL GAD2 HomoSapiens PMID:34811538 tetramer-sort yes amplicon-seq Naive T cells T1D T1D_5 chip0423_187981 PBMC +11342 CAPEVHKLVF TRAV16*01 TRAJ47*01 CASSTRSANEQFF TRBV19*01 TRBJ2-1*01 HLA-A*02:01 B2M MHCI GILGFVFTL M1 InfluenzaA PMID:34811538 tetramer-sort yes amplicon-seq transitional T cells between effector and memory populations healthy healthy_3 chip0423_536472 PBMC +11346 CSAGRDGTNEKLFF TRBV29-1*01 TRBJ1-4*01 HLA-A*02:01 B2M MHCI GLCTLVAML BLMF1 EBV PMID:34811538 tetramer-sort yes amplicon-seq effector memory T cells T1D T1D_6 chip0423_414644 PBMC +11347 CIVRVgt?RDQFSF TRAV26-1*01 TRAJ49*01 HLA-A*01:01 B2M MHCI CTELKLSDY NP InfluenzaA PMID:34811538 tetramer-sort yes amplicon-seq transitional T cells between effector and memory populations healthy healthy_3 chip0423_859410 PBMC +11352 CATEGDSGYSTLTF TRAV17*01 TRAJ11*01 CASSRQGGSNYGYTF TRBV6-1*01 TRBJ1-2*01 HLA-A*02:01 B2M MHCI FLYALALLL LMP2 EBV PMID:34811538 tetramer-sort yes amplicon-seq central memory T cells T1D T1D_7 chip0514_507692 PBMC +11353 CATVGNSGYSTLTF TRAV17*01 TRAJ11*01 CASSLQGGNIQYF TRBV6-1*01 TRBJ2-4*01 HLA-A*02:01 B2M MHCI FLYALALLL LMP2 EBV PMID:34811538 tetramer-sort yes amplicon-seq effector memory T cells T1D T1D_8 chip0514_598817 PBMC +11354 CAVLMDSNYQLIW TRAV21*01 TRAJ33*01 CASSPGNVYEQYF TRBV7-9*01 TRBJ2-7*01 HLA-A*02:01 B2M MHCI CLGGLLTMV LMP2A EBV PMID:34811538 tetramer-sort yes amplicon-seq effector memory T cells tet_neg chip0514_732312 PBMC +11355 CAMREGGNFNKFYF TRAV14/DV4*01 TRAJ21*01 CSVVVPPNQPQHF TRBV29-1*01 TRBJ1-5*01 HLA-A*02:01 B2M MHCI YVLDHLIVV BRLF1 EBV PMID:34811538 tetramer-sort yes amplicon-seq effector memory T cells T1D T1D_8 chip0514_37079 PBMC +11356 CAVNMGGGYQKVTF TRAV12-2*01 TRAJ13*01 CASSYTSGATDTQYF TRBV6-5*01 TRBJ2-3*01 HLA-A*02:01 B2M MHCI YLLPGWKL VP3 RotavirusA PMID:34811538 tetramer-sort yes amplicon-seq central memory T cells T1D T1D_8 chip0514_580575 PBMC +11357 CALSDAYNFNKFYF TRAV19*01 TRAJ21*01 CASSFSFGQGANEQFF TRBV7-6*01 TRBJ2-1*01 HLA-A*02:01 B2M MHCI FLYALALLL LMP2 EBV PMID:34811538 tetramer-sort yes amplicon-seq effector memory T cells T1D T1D_7 chip0514_120984 PBMC +11358 CATSSWTENPDTQYF TRBV24-1*01 TRBJ2-3*01 HLA-A*02:01 B2M MHCI YVLDHLIVV BRLF1 EBV PMID:34811538 tetramer-sort yes amplicon-seq effector memory T cells T1D T1D_7 chip0514_618459 PBMC +11359 CAAKDTDKLIF TRAV8-1*01 TRAJ34*01 CASSFNVGTVPYEQYF TRBV27*01 TRBJ2-7*01 HLA-A*02:01 B2M MHCI YVLDHLIVV BRLF1 EBV PMID:34811538 tetramer-sort yes amplicon-seq effector memory T cells T1D T1D_7 chip0514_480992 PBMC +11360 CAIRASKIIF TRAV12-3*01 TRAJ3*01 CASTTSGGVLSTDTQYF TRBV2*01 TRBJ2-3*01 HLA-A*02:01 B2M MHCI LLAGIGTVPI PGT HomoSapiens PMID:34811538 tetramer-sort yes amplicon-seq Naive T cells tet_neg chip0514_609220 PBMC +11361 CAPAGASGYSTLTF TRAV17*01 TRAJ11*01 CASSRQGGSNYGYTF TRBV6-1*01 TRBJ1-2*01 HLA-A*02:01 B2M MHCI FLYALALLL LMP2 EBV PMID:34811538 tetramer-sort yes amplicon-seq central memory T cells T1D T1D_7 chip0514_212942 PBMC +11362 CAVGDDKIIF TRAV12-2*01 TRAJ30*01 CASSRDWGVGEQFF TRBV12-3*01,TRBV12-4*01 TRBJ2-1*01 HLA-A*02:01 B2M MHCI ALAGIGILTV MART1 HomoSapiens PMID:34811538 tetramer-sort yes amplicon-seq Naive T cells tet_neg chip0514_125608 PBMC +11363 RALWMARRCLLFF TRAV9-2*01 TRAJ12*01 CASSFNAEQFF TRBV12-3*01,TRBV12-4*01 TRBJ2-1*01 HLA-A*02:01 B2M MHCI CLGGLLTMV LMP2A EBV PMID:34811538 tetramer-sort yes amplicon-seq Naive T cells T1D T1D_7 chip0514_129127 PBMC +11364 CAMSLSNFGYEKLTY TRAV12-3*01 TRAJ48*01 CASSLLAENTGELFF TRBV5-4*01 TRBJ2-2*01 HLA-A*02:01 B2M MHCI LLAGIGTVPI PGT HomoSapiens PMID:34811538 tetramer-sort yes amplicon-seq Naive T cells T1D T1D_7 chip0514_453842 PBMC +11365 CGGVDGSSNPGKLIL TRAV27*01 TRAJ37*01 CSAGGGLPYEQYF TRBV20-1*01 TRBJ2-7*01 HLA-A*02:01 B2M MHCI GILGFVFTL M1 InfluenzaA PMID:34811538 tetramer-sort yes amplicon-seq effector memory T cells tet_neg chip0514_584762 PBMC +11366 CAVADMRF TRAV12-2*01 TRAJ43*01 CAWSLAGVGELFF TRBV30*01 TRBJ2-2*01 HLA-A*02:01 B2M MHCI ALAGIGILTV MART1 HomoSapiens PMID:34811538 tetramer-sort yes amplicon-seq Naive T cells T1D T1D_8 chip0514_448954 PBMC +11367 CAMSISNFGNEKLTF TRAV12-3*01 TRAJ48*01 HLA-A*02:01 B2M MHCI LLAGIGTVPI PGT HomoSapiens PMID:34811538 tetramer-sort yes amplicon-seq Naive T cells T1D T1D_7 chip0514_18050 PBMC +11368 CAMRVDNFNKFYF TRAV14/DV4*01 TRAJ21*01 CSARDGTGNGYTF TRBV20-1*01 TRBJ1-2*01 HLA-A*02:01 B2M MHCI GLCTLVAML BLMF1 EBV PMID:34811538 tetramer-sort yes amplicon-seq effector memory T cells tet_neg chip0514_689437 PBMC +11369 CAWRPLQGGGTDAFF TRBV30*01 TRBJ1-1*01 HLA-A*02:01 B2M MHCI YVLDHLIVV BRLF1 EBV PMID:34811538 tetramer-sort yes amplicon-seq effector memory T cells T1D T1D_7 chip0514_593000 PBMC +11370 CAASSPLgg?AGSYQLTF TRAV23/DV6*01,TRAV13-1*01 TRAJ28*01 CASSQVVRGEGGYTF TRBV4-3*01 TRBJ1-2*01 HLA-A*02:01 B2M MHCI LVGPTPVNI POL HIV-1 PMID:34811538 tetramer-sort yes amplicon-seq Naive T cells tet_neg chip0514_50713 PBMC +11371 CAARGSGTYKYIF TRAV12-3*01 TRAJ40*01 CASNQDLLNTGELFF TRBV4-2*01 TRBJ2-2*01 HLA-A*02:01 B2M MHCI LLAGIGTVPI PGT HomoSapiens PMID:34811538 tetramer-sort yes amplicon-seq Naive T cells T1D T1D_7 chip0514_430172 PBMC +11372 CAMSLSNFGNEKLTF TRAV12-3*01 TRAJ48*01 CASNAGTSGANVLTF TRBV4-1*01 TRBJ2-6*01 HLA-A*02:01 B2M MHCI LLAGIGTVPI PGT HomoSapiens PMID:34811538 tetramer-sort yes amplicon-seq Naive T cells T1D T1D_7 chip0514_783688 PBMC +11373 CAMSLSNFGNEKLTF TRAV12-3*01 TRAJ48*01 CASSVEVGMDGYTF TRBV9*01 TRBJ1-2*01 HLA-A*02:01 B2M MHCI LLAGIGTVPI PGT HomoSapiens PMID:34811538 tetramer-sort yes amplicon-seq Naive T cells T1D T1D_8 chip0514_686064 PBMC +11374 CAMSFSNFGNEKLTF TRAV12-3*01 TRAJ48*01 CSASDRARSNQPQHF TRBV20-1*01 TRBJ1-5*01 HLA-A*02:01 B2M MHCI LLAGIGTVPI PGT HomoSapiens PMID:34811538 tetramer-sort yes amplicon-seq Naive T cells T1D T1D_8 chip0514_63076 PBMC +11376 CASSSLSGSGQPQHF TRBV28*01 TRBJ1-5*01 HLA-A*02:01 B2M MHCI YVLDHLIVV BRLF1 EBV PMID:34811538 tetramer-sort yes amplicon-seq effector memory T cells T1D T1D_7 chip0514_290399 PBMC +11377 CAVKGSQGNLIF TRAV8-1*01 TRAJ42*01 CASSHLPGGGQETQYF TRBV3-1*01 TRBJ2-5*01 HLA-A*02:01 B2M MHCI YVLDHLIVV BRLF1 EBV PMID:34811538 tetramer-sort yes amplicon-seq effector memory T cells T1D T1D_7 chip0514_798173 PBMC +11378 CAMTLSNFGNEKLTF TRAV12-3*01 TRAJ48*01 CASSPGRLTGGFEETQYF TRBV11-3*01 TRBJ2-5*01 HLA-A*02:01 B2M MHCI LLAGIGTVPI PGT HomoSapiens PMID:34811538 tetramer-sort yes amplicon-seq Naive T cells T1D T1D_7 chip0514_147696 PBMC +11379 CVVNVPNDYKLSF TRAV12-1*01 TRAJ20*01 CASSEAQRAGGNEQFF TRBV6-1*01 TRBJ2-1*01 HLA-A*02:01 B2M MHCI GLCTLVAML BLMF1 EBV PMID:34811538 tetramer-sort yes amplicon-seq effector T cells T1D T1D_8 chip0514_172778 PBMC +11380 CIVRVAPYGGSQGNLIF TRAV26-1*01 TRAJ42*01 CASFIAGGPGEQFF TRBV30*01 TRBJ2-1*01 HLA-A*02:01 B2M MHCI LLAGIGTVPI PGT HomoSapiens PMID:34811538 tetramer-sort yes amplicon-seq Naive T cells T1D T1D_8 chip0514_443580 PBMC +11382 CAEIAKEW??gGSNYKLTF TRAV13-2*01 TRAJ53*01 CASSILSTDTQYF TRBV19*01 TRBJ2-3*01 HLA-A*02:01 B2M MHCI GILGFVFTL M1 InfluenzaA PMID:34811538 tetramer-sort yes amplicon-seq Naive T cells T1D T1D_7 chip0514_126417 PBMC +11383 GAPEGYGTKLVF TRAV12-2*01 TRAJ47*01 CASSGLAGGLYEQYF TRBV28*01 TRBJ2-7*01 HLA-A*02:01 B2M MHCI LLAGIGTVPI PGT HomoSapiens PMID:34811538 tetramer-sort yes amplicon-seq Naive T cells T1D T1D_7 chip0514_686044 PBMC +11384 CAMNSWGKLQF TRAV12-3*01 TRAJ24*01 CASSIRSSYEQYF TRBV19*01 TRBJ2-7*01 HLA-A*02:01 B2M MHCI LLSLFSLWL ZNT8 HomoSapiens PMID:34811538 tetramer-sort yes amplicon-seq transitional T cells between effector and memory populations tet_neg chip0514_42093 PBMC +11385 CASAGGSSYEQYF TRBV9*01 TRBJ2-7*01 HLA-A*02:01 B2M MHCI GILGFVFTL M1 InfluenzaA PMID:34811538 tetramer-sort yes amplicon-seq Naive T cells T1D T1D_7 chip0514_78218 PBMC +11386 CAVKDTDKLIF TRAV8-1*01 TRAJ34*01 CSATDSTYNEQFF TRBV20-1*01 TRBJ2-1*01 HLA-A*02:01 B2M MHCI YVLDHLIVV BRLF1 EBV PMID:34811538 tetramer-sort yes amplicon-seq effector memory T cells T1D T1D_7 chip0514_840599 PBMC +11387 CAMGGDARLMF TRAV12-3*01 TRAJ31*01 CASSLGSEQYF TRBV7-9*01 TRBJ2-7*01 HLA-A*02:01 B2M MHCI LLAGIGTVPI PGT HomoSapiens PMID:34811538 tetramer-sort yes amplicon-seq Naive T cells T1D T1D_7 chip0514_43383 PBMC +11388 CAYRSAPGEDSRYALNF TRAV38-2/DV8*01 TRAJ41*01 CASKGAYQETQYF TRBV13*01 TRBJ2-5*01 HLA-A*02:01 B2M MHCI LLFNILGGWV NS4B HCV PMID:34811538 tetramer-sort yes amplicon-seq Naive T cells T1D T1D_7 chip0514_595604 PBMC +11389 CATDDMRF TRAV9-2*01 TRAJ43*01 CASSHLGGAYNEQFF TRBV3-1*01 TRBJ2-1*01 HLA-A*02:01 B2M MHCI YVLDHLIVV BRLF1 EBV PMID:34811538 tetramer-sort yes amplicon-seq effector memory T cells T1D T1D_7 chip0514_295479 PBMC +11390 CAVYYNTDKLIF TRAV21*01 TRAJ34*01 HLA-A*02:01 B2M MHCI VMNILLQYV GAD65 HomoSapiens PMID:34811538 tetramer-sort yes amplicon-seq Naive T cells T1D T1D_7 chip0514_597113 PBMC +11391 CAVKDTDKLIF TRAV8-1*01 TRAJ34*01 HLA-A*02:01 B2M MHCI YVLDHLIVV BRLF1 EBV PMID:34811538 tetramer-sort yes amplicon-seq effector T cells T1D T1D_8 chip0514_868620 PBMC +11392 CSARDLRAGRAYEQYF TRBV20-1*01 TRBJ2-7*01 HLA-A*02:01 B2M MHCI CLGGLLTMV LMP2A EBV PMID:34811538 tetramer-sort yes amplicon-seq central memory T cells T1D T1D_8 chip0514_827271 PBMC +11393 CASSQDQNEQYF TRBV4-1*01 TRBJ2-7*01 HLA-A*02:01 B2M MHCI GIIYIIYKL P3A CoxsackievirusB PMID:34811538 tetramer-sort yes amplicon-seq Naive T cells T1D T1D_8 chip0514_117677 PBMC +11394 CVVNGEDSSYKLIF TRAV12-1*01 TRAJ12*01 CASSDGAVAPGEQFF TRBV2*01 TRBJ2-1*01 HLA-A*02:01 B2M MHCI GLCTLVAML BLMF1 EBV PMID:34811538 tetramer-sort yes amplicon-seq effector memory T cells T1D T1D_7 chip0514_615674 PBMC +11395 CAVKDTGKLIF TRAV8-1*01 TRAJ37*01 CASSPMPLDTQYF TRBV3-1*01 TRBJ2-3*01 HLA-A*02:01 B2M MHCI YVLDHLIVV BRLF1 EBV PMID:34811538 tetramer-sort yes amplicon-seq effector T cells T1D T1D_7 chip0514_450816 PBMC +11396 CATSVDSGTPYNEQFF TRBV24-1*01 TRBJ2-1*01 HLA-A*02:01 B2M MHCI FLGKIWPSYK GAG HIV-1 PMID:34811538 tetramer-sort yes amplicon-seq Naive T cells T1D T1D_8 chip0514_154868 PBMC +11397 CAASIRAGNQFYF TRAV13-1*01 TRAJ49*01 CASSPPAGSEQFF TRBV13*01 TRBJ2-1*01 HLA-A*02:01 B2M MHCI YLLPGWKL VP3 RotavirusA PMID:34811538 tetramer-sort yes amplicon-seq Naive T cells T1D T1D_7 chip0514_303300 PBMC +11398 CAYDGGSQGNLIF TRAV38-1*01 TRAJ42*01 CASSDLYEQYF TRBV2*01 TRBJ2-7*01 HLA-A*02:01 B2M MHCI YLLLRVLNI IGRP HomoSapiens PMID:34811538 tetramer-sort yes amplicon-seq Naive T cells T1D T1D_7 chip0514_29815 PBMC +11399 CASSYILGDIQYF TRBV12-3*01,TRBV12-4*01 TRBJ2-4*01 HLA-A*02:01 B2M MHCI YLVALGINAV POL HCV PMID:34811538 tetramer-sort yes amplicon-seq natural killer-like T cells T1D T1D_7 chip0514_643791 PBMC +11400 CALV*C??aGNMLTF TRAV16*01 TRAJ39*01 CASSVRSSYEQYF TRBV19*01 TRBJ2-7*01 HLA-A*02:01 B2M MHCI GILGFVFTL M1 InfluenzaA PMID:34811538 tetramer-sort yes amplicon-seq transitional T cells between effector and memory populations T1D T1D_8 chip0514_830441 PBMC +11401 CASSIYSGNQPQHF TRBV19*01 TRBJ1-5*01 HLA-A*02:01 B2M MHCI GILGFVFTL M1 InfluenzaA PMID:34811538 tetramer-sort yes amplicon-seq effector T cells T1D T1D_8 chip0514_819776 PBMC +11402 CASSSRIGSGNTIIF TRBV7-8*01 TRBJ1-3*01 HLA-A*02:01 B2M MHCI RLLPLLALLAL INS HomoSapiens PMID:34811538 tetramer-sort yes amplicon-seq Naive T cells T1D T1D_7 chip0514_42819 PBMC +11403 CSVPDTDKLIF TRAV8-1*01 TRAJ34*01 HLA-A*02:01 B2M MHCI YVLDHLIVV BRLF1 EBV PMID:34811538 tetramer-sort yes amplicon-seq effector T cells T1D T1D_8 chip0514_665135 PBMC +11404 CAPEGDSGYSTLTF TRAV17*01 TRAJ11*01 CAGRLGLgc??ggDSYEQYF TRBV7-2*01 TRBJ2-7*01 HLA-A*02:01 B2M MHCI FLYALALLL LMP2 EBV PMID:34811538 tetramer-sort yes amplicon-seq effector memory T cells tet_neg chip0514_827048 PBMC +11406 CASSPIGQPQHF TRBV28*01 TRBJ1-5*01 HLA-A*02:01 B2M MHCI ALAGIGILTV MART1 HomoSapiens PMID:34811538 tetramer-sort yes amplicon-seq Naive T cells T1D T1D_7 chip0514_122833 PBMC +11407 CAVSSGYSTLTF TRAV8-1*01 TRAJ11*01 CASSSLSGSGQPQHF TRBV28*01 TRBJ1-5*01 HLA-A*02:01 B2M MHCI YVLDHLIVV BRLF1 EBV PMID:34811538 tetramer-sort yes amplicon-seq effector T cells T1D T1D_7 chip0514_568448 PBMC +11408 CALPGTNFGNEKLTF TRAV12-2*01 TRAJ48*01 CASTQGDFYNEQFF TRBV6-2*01,TRBV6-3*01 TRBJ2-1*01 HLA-A*02:01 B2M MHCI YLLPRRGPRL POL HCV PMID:34811538 tetramer-sort yes amplicon-seq Naive T cells T1D T1D_7 chip0514_832003 PBMC +11409 CVASGGGADGLTF TRAV12-1*01 TRAJ45*01 CASSPLNGIYEQYF TRBV28*01 TRBJ2-7*01 HLA-A*02:01 B2M MHCI LLAGIGTVPI PGT HomoSapiens PMID:34811538 tetramer-sort yes amplicon-seq Naive T cells T1D T1D_7 chip0514_675854 PBMC +11410 CAVKDTDKLIF TRAV8-1*01 TRAJ34*01 HLA-A*02:01 B2M MHCI YVLDHLIVV BRLF1 EBV PMID:34811538 tetramer-sort yes amplicon-seq effector memory T cells T1D T1D_7 chip0514_222181 PBMC +11411 CAVREK??aDDKIIF TRAV8-6*01 TRAJ30*01 CASSGGGEQFF TRBV6-1*01 TRBJ2-1*01 HLA-A*02:01 B2M MHCI LLFNILGGWV NS4B HCV PMID:34811538 tetramer-sort yes amplicon-seq Naive T cells T1D T1D_8 chip0514_45527 PBMC +11412 CAVGGRGYQKVTF TRAV12-2*01 TRAJ13*01 CASSVGTEAFF TRBV9*01 TRBJ1-1*01 HLA-A*02:01 B2M MHCI LLAGIGTVPI PGT HomoSapiens PMID:34811538 tetramer-sort yes amplicon-seq Naive T cells T1D T1D_8 chip0514_287222 PBMC +11413 CAARGGg?tYQKVTF TRAV13-1*01 TRAJ13*01 HLA-A*02:01 B2M MHCI YVLDHLIVV BRLF1 EBV PMID:34811538 tetramer-sort yes amplicon-seq effector T cells T1D T1D_7 chip0514_772861 PBMC +11414 CAVTPEGAGNMLTF TRAV3*01 TRAJ39*01 CASSGTGPLFPNEQFF TRBV6-1*01 TRBJ2-1*01 HLA-A*02:01 B2M MHCI ALAGIGILTV MART1 HomoSapiens PMID:34811538 tetramer-sort yes amplicon-seq Naive T cells T1D T1D_8 chip0514_163272 PBMC +11415 CSARGSTFYEQYF TRBV20-1*01 TRBJ2-7*01 HLA-A*02:01 B2M MHCI YVLDHLIVV BRLF1 EBV PMID:34811538 tetramer-sort yes amplicon-seq effector memory T cells T1D T1D_7 chip0514_789001 PBMC +11416 CAVNWVNDMRF TRAV8-1*01 TRAJ43*01 LCPQPIKcg??ggSGETQYF TRBV3-1*01 TRBJ2-5*01 HLA-A*02:01 B2M MHCI YVLDHLIVV BRLF1 EBV PMID:34811538 tetramer-sort yes amplicon-seq effector T cells T1D T1D_7 chip0514_510509 PBMC +11417 CAMSISNFGNEKLTF TRAV12-3*01 TRAJ48*01 CASSPRGMSATNEKLFF TRBV27*01 TRBJ1-4*01 HLA-A*02:01 B2M MHCI LLAGIGTVPI PGT HomoSapiens PMID:34811538 tetramer-sort yes amplicon-seq Naive T cells T1D T1D_7 chip0514_332122 PBMC +11418 CAASGDDKIIF TRAV29/DV5*01 TRAJ30*01 CSARDRGTDTQYF TRBV20-1*01 TRBJ2-3*01 HLA-A*02:01 B2M MHCI LLFNILGGWV NS4B HCV PMID:34811538 tetramer-sort yes amplicon-seq Naive T cells T1D T1D_7 chip0514_716357 PBMC +11419 CSARGGNSYEQYF TRBV20-1*01 TRBJ2-7*01 HLA-A*02:01 B2M MHCI RQFGPDWIVA ADH HomoSapiens PMID:34811538 tetramer-sort yes amplicon-seq Naive T cells T1D T1D_7 chip0514_41062 PBMC +11420 GAMSYGTRGSFAPTF TRAV12-3*01 TRAJ6*01 CASSPGGGKDTGELFF TRBV28*01 TRBJ2-2*01 HLA-A*02:01 B2M MHCI ALAGIGILTV MART1 HomoSapiens PMID:34811538 tetramer-sort yes amplicon-seq Naive T cells T1D T1D_7 chip0514_717118 PBMC +11421 CASSPLLGSNQPQHF TRBV19*01 TRBJ1-5*01 HLA-A*02:01 B2M MHCI YVLDHLIVV BRLF1 EBV PMID:34811538 tetramer-sort yes amplicon-seq effector T cells T1D T1D_7 chip0514_77412 PBMC +11422 CASSGDGMNTEAFF TRBV10-2*01 TRBJ1-1*01 HLA-A*02:01 B2M MHCI CLGGLLTMV LMP2A EBV PMID:34811538 tetramer-sort yes amplicon-seq effector memory T cells T1D T1D_7 chip0514_159140 PBMC +11423 CAVGHYQLIW TRAV12-2*01 TRAJ33*01 HLA-A*02:01 B2M MHCI ILSAHVATA ZNT8 HomoSapiens PMID:34811538 tetramer-sort yes amplicon-seq Naive T cells T1D T1D_7 chip0514_349767 PBMC +11424 CAERGRDDKIIF TRAV13-2*01 TRAJ30*01 CASSELAASTYEQYF TRBV2*01 TRBJ2-7*01 HLA-A*02:01 B2M MHCI LLIDLTSFL ZNT8 HomoSapiens PMID:34811538 tetramer-sort yes amplicon-seq central memory T cells T1D T1D_8 chip0514_275875 PBMC +11425 CAMSLSNFGNEKLTF TRAV12-3*01 TRAJ48*01 CASSSPLTGELFF TRBV5-5*01 TRBJ2-2*01 HLA-A*02:01 B2M MHCI LLAGIGTVPI PGT HomoSapiens PMID:34811538 tetramer-sort yes amplicon-seq Naive T cells T1D T1D_7 chip0514_863888 PBMC +11426 CAVKDTDKLIF TRAV8-1*01 TRAJ34*01 HLA-A*02:01 B2M MHCI YVLDHLIVV BRLF1 EBV PMID:34811538 tetramer-sort yes amplicon-seq effector memory T cells T1D T1D_7 chip0514_186651 PBMC +11427 CAVGGSYIPTF TRAV12-2*01 TRAJ6*01 CASRPLGGTLETQYF TRBV7-9*01 TRBJ2-5*01 HLA-A*02:01 B2M MHCI LLAGIGTVPI PGT HomoSapiens PMID:34811538 tetramer-sort yes amplicon-seq Naive T cells T1D T1D_7 chip0514_35474 PBMC +11428 CAEDSSYKLIF TRAV12-1*01 TRAJ12*01 CASGTPQVADTQYF TRBV6-2*01,TRBV6-3*01 TRBJ2-3*01 HLA-A*02:01 B2M MHCI LLSLFSLWL ZNT8 HomoSapiens PMID:34811538 tetramer-sort yes amplicon-seq Naive T cells T1D T1D_7 chip0514_271805 PBMC +11429 CAMSGSNFGNEKLTF TRAV12-3*01 TRAJ48*01 HLA-A*02:01 B2M MHCI LLAGIGTVPI PGT HomoSapiens PMID:34811538 tetramer-sort yes amplicon-seq Naive T cells T1D T1D_7 chip0514_541202 PBMC +11430 CAMTLSNFGNEKLTF TRAV12-3*01 TRAJ48*01 HLA-A*02:01 B2M MHCI LLAGIGTVPI PGT HomoSapiens PMID:34811538 tetramer-sort yes amplicon-seq Naive T cells T1D T1D_8 chip0514_792173 PBMC +11431 CAMSISNFGNEKLTF TRAV12-3*01 TRAJ48*01 CASSSKTGADSYEQYF TRBV19*01 TRBJ2-7*01 HLA-A*02:01 B2M MHCI LLAGIGTVPI PGT HomoSapiens PMID:34811538 tetramer-sort yes amplicon-seq Naive T cells T1D T1D_7 chip0514_543218 PBMC +11432 CAVNGGNKLVF TRAV12-2*01 TRAJ47*01 CASSFGAFNEQFF TRBV27*01 TRBJ2-1*01 HLA-A*02:01 B2M MHCI ALAGIGILTV MART1 HomoSapiens PMID:34811538 tetramer-sort yes amplicon-seq effector memory T cells T1D T1D_7 chip0514_366861 PBMC +11433 CAVSSDGQKLLF TRAV12-2*01 TRAJ16*01 CASGSGYLGGNEQFF TRBV28*01 TRBJ2-1*01 HLA-A*02:01 B2M MHCI LLAGIGTVPI PGT HomoSapiens PMID:34811538 tetramer-sort yes amplicon-seq Naive T cells T1D T1D_7 chip0514_581083 PBMC +11434 CASSEVSGYTEAFF TRBV7-9*01 TRBJ1-1*01 HLA-A*02:01 B2M MHCI VVTGVLVYL ZNT8 HomoSapiens PMID:34811538 tetramer-sort yes amplicon-seq Naive T cells T1D T1D_8 chip0514_509843 PBMC +11437 CAMKGDTAKLIF TRAV14/DV4*01 TRAJ34*01 CSARDGTGGETQYF TRBV20-1*01 TRBJ2-5*01 HLA-A*02:01 B2M MHCI VMNILLQYV GAD65 HomoSapiens PMID:34811538 tetramer-sort yes amplicon-seq Naive T cells T1D T1D_7 chip0514_622660 PBMC +11438 CAARGGg?tYQKVTF TRAV13-1*01 TRAJ13*01 CASSSLSGSGQPQHF TRBV28*01 TRBJ1-5*01 HLA-A*02:01 B2M MHCI YVLDHLIVV BRLF1 EBV PMID:34811538 tetramer-sort yes amplicon-seq effector T cells T1D T1D_7 chip0514_667622 PBMC +11439 CAVHDMRF TRAV12-2*01 TRAJ43*01 CASSSDRALTGELFF TRBV7-6*01 TRBJ2-2*01 HLA-A*02:01 B2M MHCI ALWMRLLPL PREINS HomoSapiens PMID:34811538 tetramer-sort yes amplicon-seq Naive T cells T1D T1D_7 chip0514_184737 PBMC +11440 CAVKDTDKLIF TRAV8-1*01 TRAJ34*01 CSATDSTYNEQFF TRBV20-1*01 TRBJ2-1*01 HLA-A*02:01 B2M MHCI YVLDHLIVV BRLF1 EBV PMID:34811538 tetramer-sort yes amplicon-seq effector T cells T1D T1D_7 chip0514_714094 PBMC +11441 CASSSLSGSGQPQHF TRBV28*01 TRBJ1-5*01 HLA-A*02:01 B2M MHCI YVLDHLIVV BRLF1 EBV PMID:34811538 tetramer-sort yes amplicon-seq effector T cells T1D T1D_7 chip0514_36680 PBMC +11442 CAMRGAPGSNTGKLIF TRAV14/DV4*01 TRAJ37*01 CASEQGAGELFF TRBV30*01 TRBJ2-2*01 HLA-A*02:01 B2M MHCI YLLPGWKL VP3 RotavirusA PMID:34811538 tetramer-sort yes amplicon-seq Naive T cells T1D T1D_8 chip0514_222234 PBMC +11443 CATEGFSGYSTLTF TRAV17*01 TRAJ11*01 CASTGQGGYSGYTF TRBV6-1*01 TRBJ1-2*01 HLA-A*02:01 B2M MHCI FLYALALLL LMP2 EBV PMID:34811538 tetramer-sort yes amplicon-seq transitional T cells between effector and memory populations T1D T1D_7 chip0514_833992 PBMC +11444 CAVSTSYGKLTF TRAV12-2*01 TRAJ52*01 HLA-A*02:01 B2M MHCI LLAGIGTVPI PGT HomoSapiens PMID:34811538 tetramer-sort yes amplicon-seq Naive T cells T1D T1D_8 chip0514_682635 PBMC +11445 CATAISNFGNEKLTF TRAV12-3*01 TRAJ48*01 CASSPHNRSTNEKLFF TRBV7-2*01 TRBJ1-4*01 HLA-A*02:01 B2M MHCI LLAGIGTVPI PGT HomoSapiens PMID:34811538 tetramer-sort yes amplicon-seq central memory T cells T1D T1D_8 chip0514_584842 PBMC +11446 CAVALKCtg??gcINRRLNW TRAV2*01 TRAJ38*01 CASSPPGLIGDTQYF TRBV27*01 TRBJ2-3*01 HLA-A*02:01 B2M MHCI YVLDHLIVV BRLF1 EBV PMID:34811538 tetramer-sort yes amplicon-seq effector T cells T1D T1D_7 chip0514_576360 PBMC +11447 CASSLFHWGNTEAFF TRBV7-2*01 TRBJ1-1*01 HLA-A*02:01 B2M MHCI VLFGLGFAI IGRP HomoSapiens PMID:34811538 tetramer-sort yes amplicon-seq effector T cells T1D T1D_7 chip0514_814029 PBMC +11448 CASKHLAGRRETQYF TRBV28*01 TRBJ2-5*01 HLA-A*02:01 B2M MHCI YVLDHLIVV BRLF1 EBV PMID:34811538 tetramer-sort yes amplicon-seq effector T cells T1D T1D_7 chip0514_661443 PBMC +11449 CAMGISNFGNEKLTF TRAV12-3*01 TRAJ48*01 HLA-A*02:01 B2M MHCI LLAGIGTVPI PGT HomoSapiens PMID:34811538 tetramer-sort yes amplicon-seq Naive T cells T1D T1D_7 chip0514_214912 PBMC +11450 CSATDSTYNEQFF TRBV20-1*01 TRBJ2-1*01 HLA-A*02:01 B2M MHCI YVLDHLIVV BRLF1 EBV PMID:34811538 tetramer-sort yes amplicon-seq effector memory T cells T1D T1D_7 chip0514_154422 PBMC +11451 CAVVGGAAGNKLTF TRAV8-3*01 TRAJ17*01 CASSQSV*EGNG*EAFL TRBV4-3*01 TRBJ1-1*01 HLA-A*02:01 B2M MHCI LLAGIGTVPI PGT HomoSapiens PMID:34811538 tetramer-sort yes amplicon-seq Naive T cells T1D T1D_7 chip0514_35725 PBMC +11452 CAVGHLGGGSYIPTF TRAV8-3*01 TRAJ6*01 CASISLGQNTEAFF TRBV6-1*01 TRBJ1-1*01 HLA-A*02:01 B2M MHCI FLYALALLL LMP2 EBV PMID:34811538 tetramer-sort yes amplicon-seq Naive T cells T1D T1D_7 chip0514_667978 PBMC +11453 CASSSLSGSGQPQHF TRBV28*01 TRBJ1-5*01 HLA-A*02:01 B2M MHCI YVLDHLIVV BRLF1 EBV PMID:34811538 tetramer-sort yes amplicon-seq effector memory T cells T1D T1D_7 chip0514_407982 PBMC +11454 CASRSGDRVQETQYL TRBV2*01 TRBJ2-5*01 HLA-A*02:01 B2M MHCI LLAGIGTVPI PGT HomoSapiens PMID:34811538 tetramer-sort yes amplicon-seq transitional T cells between effector and memory populations tet_neg chip0514_756064 PBMC +11456 CASSSFHIQGGYEQYF TRBV28*01 TRBJ2-7*01 HLA-A*02:01 B2M MHCI VLFGLGFAI IGRP HomoSapiens PMID:34811538 tetramer-sort yes amplicon-seq effector memory T cells T1D T1D_7 chip0514_820101 PBMC +11457 CAESSGASGKLIF TRAV5*01 TRAJ37*01 CSVGTGGTNEKLFF TRBV29-1*01 TRBJ1-4*01 HLA-A*02:01 B2M MHCI GLCTLVAML BLMF1 EBV PMID:34811538 tetramer-sort yes amplicon-seq effector T cells T1D T1D_8 chip0514_442017 PBMC +11458 CAMSISNFGNEKLTF TRAV12-3*01 TRAJ48*01 CASSVEFGGSSYNEQFF TRBV9*01 TRBJ2-1*01 HLA-A*02:01 B2M MHCI LLAGIGTVPI PGT HomoSapiens PMID:34811538 tetramer-sort yes amplicon-seq Naive T cells T1D T1D_7 chip0514_348026 PBMC +11459 CAVYGTGKLIL TRAV8-1*01 TRAJ37*01 CASSQGPSGGNEQFF TRBV3-1*01 TRBJ2-1*01 HLA-A*02:01 B2M MHCI YVLDHLIVV BRLF1 EBV PMID:34811538 tetramer-sort yes amplicon-seq effector T cells T1D T1D_7 chip0514_35363 PBMC +11460 CAVTQYSTLTF TRAV12-2*01 TRAJ11*01 CASSLAGAGNEQFF TRBV5-1*01 TRBJ2-1*01 HLA-A*02:01 B2M MHCI IQATVMIIV ZNT8 HomoSapiens PMID:34811538 tetramer-sort yes amplicon-seq Naive T cells T1D T1D_7 chip0514_114691 PBMC +11461 CAMSISNFGNEKLTF TRAV12-3*01 TRAJ48*01 CASNKETSWAGESYNEQFF TRBV6-4*01 TRBJ2-1*01 HLA-A*02:01 B2M MHCI LLAGIGTVPI PGT HomoSapiens PMID:34811538 tetramer-sort yes amplicon-seq Naive T cells T1D T1D_7 chip0514_141979 PBMC +11463 CAMSPDSNYQLIW TRAV14/DV4*01 TRAJ33*01 HLA-A*02:01 B2M MHCI RGPGRAFVTI GP160 HIV-1 PMID:34811538 tetramer-sort yes amplicon-seq Naive T cells T1D T1D_7 chip0514_361565 PBMC +11464 CASTDSGPLQGNENGNTEAFF TRBV6-4*01 TRBJ1-1*01 HLA-A*02:01 B2M MHCI LLAGIGTVPI PGT HomoSapiens PMID:34811538 tetramer-sort yes amplicon-seq Naive T cells T1D T1D_8 chip0514_413343 PBMC +11465 CAVNLVYSGGGADGLTF TRAV12-2*01 TRAJ45*01 CAISESSGLSGNTIYF TRBV10-3*01 TRBJ1-3*01 HLA-A*02:01 B2M MHCI ALAGIGILTV MART1 HomoSapiens PMID:34811538 tetramer-sort yes amplicon-seq Naive T cells T1D T1D_7 chip0514_339858 PBMC +11466 CVVNIGAATGRRALTF TRAV12-1*01 TRAJ5*01 CASSFLTGAYEQYF TRBV28*01 TRBJ2-7*01 HLA-A*02:01 B2M MHCI GILGFVFTL M1 InfluenzaA PMID:34811538 tetramer-sort yes amplicon-seq Naive T cells T1D T1D_7 chip0514_657579 PBMC +11467 CILRQGGSEKLVF TRAV26-2*01 TRAJ57*01 CASRAGVSNQPQHF TRBV10-2*01 TRBJ1-5*01 HLA-A*02:01 B2M MHCI VVTGVLVYL ZNT8 HomoSapiens PMID:34811538 tetramer-sort yes amplicon-seq Naive T cells T1D T1D_8 chip0514_256491 PBMC +11468 CAMREPLgc??ccPGNQFYF TRAV14/DV4*01 TRAJ49*01 HLA-A*02:01 B2M MHCI LLSLFSLWL ZNT8 HomoSapiens PMID:34811538 tetramer-sort yes amplicon-seq Naive T cells T1D T1D_7 chip0514_711970 PBMC +11469 CAVSGTYKYIF TRAV8-1*01 TRAJ40*01 CASRRQGTYGYTF TRBV6-1*01 TRBJ1-2*01 HLA-A*02:01 B2M MHCI YVLDHLIVV BRLF1 EBV PMID:34811538 tetramer-sort yes amplicon-seq effector memory T cells T1D T1D_8 chip0514_189951 PBMC +11471 CASSRQGSYNEQFF TRBV28*01 TRBJ2-1*01 HLA-A*02:01 B2M MHCI AIIRILQQL VPR HIV-1 PMID:34811538 tetramer-sort yes amplicon-seq Naive T cells T1D T1D_7 chip0514_260090 PBMC +11472 CAVAGQKLLF TRAV12-2*01 TRAJ16*01 CASSDRLLGNQPQHF TRBV28*01 TRBJ1-5*01 HLA-A*02:01 B2M MHCI LLAGIGTVPI PGT HomoSapiens PMID:34811538 tetramer-sort yes amplicon-seq Naive T cells T1D T1D_8 chip0514_637975 PBMC +11473 CAMS*GSADQLIL TRAV12-3*01 TRAJ30*01 CASSSLAGLTSTDTQYF TRBV12-3*01,TRBV12-4*01 TRBJ2-3*01 HLA-A*02:01 B2M MHCI LLAGIGTVPI PGT HomoSapiens PMID:34811538 tetramer-sort yes amplicon-seq Naive T cells T1D T1D_7 chip0514_348010 PBMC +11474 CASSGDTTSAYNEQFF TRBV27*01 TRBJ2-1*01 HLA-A*02:01 B2M MHCI YVLDHLIVV BRLF1 EBV PMID:34811538 tetramer-sort yes amplicon-seq effector T cells T1D T1D_8 chip0514_779729 PBMC +11475 CASSQDGRGGTGELFF TRBV3-1*01 TRBJ2-2*01 HLA-A*02:01 B2M MHCI LLSLFSLWL ZNT8 HomoSapiens PMID:34811538 tetramer-sort yes amplicon-seq Naive T cells T1D T1D_7 chip0514_790749 PBMC +11476 CAVTFLGGSQGNLIF TRAV8-4*01 TRAJ42*01 HLA-A*02:01 B2M MHCI GILGFVFTL M1 InfluenzaA PMID:34811538 tetramer-sort yes amplicon-seq transitional T cells between effector and memory populations T1D T1D_7 chip0514_80987 PBMC +11477 CAMMKSNFGNEKLTF TRAV12-3*01 TRAJ48*01 CASSGQRLRTDTQYF TRBV2*01 TRBJ2-3*01 HLA-A*02:01 B2M MHCI LLAGIGTVPI PGT HomoSapiens PMID:34811538 tetramer-sort yes amplicon-seq Naive T cells T1D T1D_7 chip0514_663170 PBMC +11478 CASSQGGSGNTIYF TRBV4-3*01 TRBJ1-3*01 HLA-A*02:01 B2M MHCI HLCGSHLVEA PPI HomoSapiens PMID:34811538 tetramer-sort yes amplicon-seq Naive T cells T1D T1D_8 chip0514_128166 PBMC +11479 CAVNAPIQGAQKLVF TRAV12-2*01 TRAJ54*01 CASGSPWTGYEQYF TRBV28*01 TRBJ2-7*01 HLA-A*02:01 B2M MHCI GIIYIIYKL P3A CoxsackievirusB PMID:34811538 tetramer-sort yes amplicon-seq Naive T cells T1D T1D_7 chip0514_612341 PBMC +11480 CAAPSGNTPLVF TRAV12-2*01 TRAJ29*01 CASSLGRGVETQYF TRBV7-9*01 TRBJ2-5*01 HLA-A*02:01 B2M MHCI LLAGIGTVPI PGT HomoSapiens PMID:34811538 tetramer-sort yes amplicon-seq Naive T cells T1D T1D_8 chip0514_447331 PBMC +11482 CAVNAGGGSQGNLIF TRAV8-1*01 TRAJ42*01 CASSSRSAYEQYF TRBV19*01 TRBJ2-7*01 HLA-A*02:01 B2M MHCI GILGFVFTL M1 InfluenzaA PMID:34811538 tetramer-sort yes amplicon-seq transitional T cells between effector and memory populations T1D T1D_8 chip0514_362322 PBMC +11483 CAARGGc?tHQKATF TRAV13-1*01 TRAJ13*01 CASSSLSGSGQPQHF TRBV28*01 TRBJ1-5*01 HLA-A*02:01 B2M MHCI YVLDHLIVV BRLF1 EBV PMID:34811538 tetramer-sort yes amplicon-seq effector T cells T1D T1D_7 chip0514_866887 PBMC +11484 CAVNDGGGNKLTF TRAV12-2*01 TRAJ10*01 CASSWGGSNQPQHF TRBV5-6*01 TRBJ1-5*01 HLA-A*02:01 B2M MHCI YLLPGWKL VP3 RotavirusA PMID:34811538 tetramer-sort yes amplicon-seq Naive T cells T1D T1D_8 chip0514_301421 PBMC +11485 CASSLLAGDNEQFF TRBV27*01 TRBJ2-1*01 HLA-A*02:01 B2M MHCI SLNYSGVKEL ZNT8 HomoSapiens PMID:34811538 tetramer-sort yes amplicon-seq Naive T cells T1D T1D_7 chip0514_87459 PBMC +11486 CASSLAAGGESGNTIYF TRBV5-5*01 TRBJ1-3*01 HLA-A*02:01 B2M MHCI LLAGIGTVPI PGT HomoSapiens PMID:34811538 tetramer-sort yes amplicon-seq natural killer-like T cells tet_neg chip0514_599231 PBMC +11487 CAFMIGAGGTSYGKLTF TRAV38-1*01 TRAJ52*01 CASSTGSYGYTF TRBV19*01 TRBJ1-2*01 HLA-A*02:01 B2M MHCI GILGFVFTL M1 InfluenzaA PMID:34811538 tetramer-sort yes amplicon-seq transitional T cells between effector and memory populations T1D T1D_8 chip0514_582713 PBMC +11488 CSARDRTGNGYTF TRBV20-1*01 TRBJ1-2*01 HLA-A*02:01 B2M MHCI GLCTLVAML BLMF1 EBV PMID:34811538 tetramer-sort yes amplicon-seq effector T cells T1D T1D_8 chip0514_729767 PBMC +11489 CVVNPSNFGNEKLTF TRAV12-1*01 TRAJ48*01 CASIGTGATDTQYF TRBV2*01 TRBJ2-3*01 HLA-A*02:01 B2M MHCI LLAGIGTVPI PGT HomoSapiens PMID:34811538 tetramer-sort yes amplicon-seq Naive T cells T1D T1D_8 chip0514_382484 PBMC +11490 CAVWNSGNTPLVF TRAV21*01 TRAJ29*01 CASSVDTLNTEAFF TRBV6-1*01 TRBJ1-1*01 HLA-A*02:01 B2M MHCI GILGFVFTL M1 InfluenzaA PMID:34811538 tetramer-sort yes amplicon-seq effector memory T cells tet_neg chip0514_8495 PBMC +11491 CAYRSPPSSEKLVF TRAV38-2/DV8*01 TRAJ57*01 CASSETTLSIGTQYF TRBV6-1*01 TRBJ2-3*01 HLA-A*02:01 B2M MHCI YVLDHLIVV BRLF1 EBV PMID:34811538 tetramer-sort yes amplicon-seq effector T cells T1D T1D_7 chip0514_103760 PBMC +11493 CASSLPDYEQYF TRBV5-1*01 TRBJ2-7*01 HLA-A*02:01 B2M MHCI IQATVMIIV ZNT8 HomoSapiens PMID:34811538 tetramer-sort yes amplicon-seq Naive T cells T1D T1D_7 chip0514_409476 PBMC +11494 CALLDGta??gcSYKLIF TRAV6*01 TRAJ12*01 CSVEDSLASGSLNEQFF TRBV29-1*01 TRBJ2-1*01 HLA-A*02:01 B2M MHCI GLCTLVAML BLMF1 EBV PMID:34811538 tetramer-sort yes amplicon-seq effector T cells T1D T1D_7 chip0514_311301 PBMC +11495 CAESISTGKLIF TRAV5*01 TRAJ37*01 CSVGTGGTNEKLFF TRBV29-1*01 TRBJ1-4*01 HLA-A*02:01 B2M MHCI GLCTLVAML BLMF1 EBV PMID:34811538 tetramer-sort yes amplicon-seq effector T cells T1D T1D_7 chip0514_75736 PBMC +11496 CAVKDTDKLIF TRAV8-1*01 TRAJ34*01 CATRSTDTQYF TRBV27*01 TRBJ2-3*01 HLA-A*02:01 B2M MHCI YVLDHLIVV BRLF1 EBV PMID:34811538 tetramer-sort yes amplicon-seq transitional T cells between effector and memory populations T1D T1D_7 chip0514_44102 PBMC +11497 CASRTETGGASEQFF TRBV6-2*01,TRBV6-3*01 TRBJ2-1*01 HLA-A*02:01 B2M MHCI YVLDHLIVV BRLF1 EBV PMID:34811538 tetramer-sort yes amplicon-seq transitional T cells between effector and memory populations T1D T1D_8 chip0514_258306 PBMC +11498 CAATISNFGNEKLTF TRAV12-3*01 TRAJ48*01 CASSLKIGRGYTQYF TRBV5-6*01 TRBJ2-3*01 HLA-A*02:01 B2M MHCI LLAGIGTVPI PGT HomoSapiens PMID:34811538 tetramer-sort yes amplicon-seq transitional T cells between effector and memory populations T1D T1D_7 chip0514_190882 PBMC +11499 CTVKENGGGADGLTV TRAV8-1*01 TRAJ45*01 CASSWGANVLTF TRBV5-6*01 TRBJ2-6*01 HLA-A*02:01 B2M MHCI PLTFGWCYKL NEF InfluenzaA PMID:34811538 tetramer-sort yes amplicon-seq Naive T cells T1D T1D_7 chip0514_856588 PBMC +11500 CLVGFNDMRF TRAV4*01 TRAJ43*01 CASSEGGGYEQYF TRBV2*01 TRBJ2-7*01 HLA-A*02:01 B2M MHCI CINGVCWTV NS3 HCV PMID:34811538 tetramer-sort yes amplicon-seq Naive T cells T1D T1D_7 chip0514_230088 PBMC +11501 CAMSPSTLg?gSGRYHLPF TRAV12-3*01 TRAJ28*01 CASSSAAEHNSPLHF TRBV11-2*01 TRBJ1-6*01 HLA-A*02:01 B2M MHCI VMNILLQYV GAD65 HomoSapiens PMID:34811538 tetramer-sort yes amplicon-seq Naive T cells T1D T1D_7 chip0514_780374 PBMC +11502 CALASFGPNFVF TRAV6*01 TRAJ26*01 CSAEVGQPMDTEAFF TRBV29-1*01 TRBJ1-1*01 HLA-A*02:01 B2M MHCI KMYAFTLES ZNT8 HomoSapiens PMID:34811538 tetramer-sort yes amplicon-seq Naive T cells T1D T1D_7 chip0514_480015 PBMC +11503 CAVKNTDKLIF TRAV8-1*01 TRAJ34*01 CASSQATGYGYTF TRBV3-1*01 TRBJ1-2*01 HLA-A*02:01 B2M MHCI YVLDHLIVV BRLF1 EBV PMID:34811538 tetramer-sort yes amplicon-seq effector T cells T1D T1D_7 chip0514_352349 PBMC +11504 CVGTRSGGSYIPTF TRAV12-1*01 TRAJ6*01 CASSQDSSEQYF TRBV4-2*01 TRBJ2-7*01 HLA-A*02:01 B2M MHCI YLQQNWWTL LMP1 EBV PMID:34811538 tetramer-sort yes amplicon-seq central memory T cells T1D T1D_8 chip0514_844210 PBMC +11505 CAGKTSYDKVIF TRAV8-1*01 TRAJ50*01 CASWPISGGYEQYF TRBV6-1*01 TRBJ2-7*01 HLA-A*02:01 B2M MHCI YVLDHLIVV BRLF1 EBV PMID:34811538 tetramer-sort yes amplicon-seq effector T cells T1D T1D_7 chip0514_830786 PBMC +11506 CASSLSGDREQFF TRBV28*01 TRBJ2-1*01 HLA-A*02:01 B2M MHCI GLCTLVAML BLMF1 EBV PMID:34811538 tetramer-sort yes amplicon-seq effector memory T cells T1D T1D_7 chip0514_14183 PBMC +11507 CAVVLNDYKLSF TRAV8-3*01 TRAJ20*01 CASRGPGELFF TRBV12-3*01,TRBV12-4*01 TRBJ2-2*01 HLA-A*02:01 B2M MHCI ALAGIGILTV MART1 HomoSapiens PMID:34811538 tetramer-sort yes amplicon-seq Naive T cells T1D T1D_7 chip0514_658492 PBMC +11508 CAMSSSNFGNEKLTF TRAV12-3*01 TRAJ48*01 CASSQVLGRHDSPNTEAFF TRBV3-1*01 TRBJ1-1*01 HLA-A*02:01 B2M MHCI LLAGIGTVPI PGT HomoSapiens PMID:34811538 tetramer-sort yes amplicon-seq Naive T cells T1D T1D_8 chip0514_38975 PBMC +11509 CAAEGVSGYSTLTF TRAV17*01 TRAJ11*01 HLA-A*02:01 B2M MHCI FLYALALLL LMP2 EBV PMID:34811538 tetramer-sort yes amplicon-seq transitional T cells between effector and memory populations T1D T1D_7 chip0514_677261 PBMC +11510 CAVSGRTSGGSYIPTF TRAV8-3*01,TRAV8-4*01 TRAJ6*01 HLA-A*02:01 B2M MHCI LLAGIGTVPI PGT HomoSapiens PMID:34811538 tetramer-sort yes amplicon-seq Naive T cells T1D T1D_7 chip0514_836614 PBMC +11511 CAVSIGFGNVLHSGSGTQV TRAV12-2*01 TRAJ41*01 CASSLDPGTGELFF TRBV12-3*01,TRBV12-4*01 TRBJ2-2*01 HLA-A*02:01 B2M MHCI ALAGIGILTV MART1 HomoSapiens PMID:34811538 tetramer-sort yes amplicon-seq Naive T cells T1D T1D_7 chip0514_661332 PBMC +11512 CAVGPPY??tGGFKTIF TRAV8-3*01 TRAJ9*01 HLA-A*02:01 B2M MHCI CINGVCWTV NS3 HCV PMID:34811538 tetramer-sort yes amplicon-seq Naive T cells T1D T1D_7 chip0514_233191 PBMC +11513 CATSGWQGSEETQYF TRBV24-1*01 TRBJ2-5*01 HLA-A*02:01 B2M MHCI YVLDHLIVV BRLF1 EBV PMID:34811538 tetramer-sort yes amplicon-seq effector memory T cells T1D T1D_7 chip0514_636342 PBMC +11514 CASSEDGMNTEAFF TRBV10-2*01 TRBJ1-1*01 HLA-A*02:01 B2M MHCI CLGGLLTMV LMP2A EBV PMID:34811538 tetramer-sort yes amplicon-seq effector memory T cells T1D T1D_7 chip0514_446431 PBMC +11515 CAVKGSGDSWGELQF TRAV12-2*01 TRAJ24*01 CASSLVAEDFNEQYF TRBV5-5*01 TRBJ2-7*01 HLA-A*02:01 B2M MHCI VVTGVLVYL ZNT8 HomoSapiens PMID:34811538 tetramer-sort yes amplicon-seq transitional T cells between effector and memory populations T1D T1D_7 chip0514_357656 PBMC +11517 CAVKDTNKLIF TRAV8-1*01 TRAJ34*01 HLA-A*02:01 B2M MHCI YVLDHLIVV BRLF1 EBV PMID:34811538 tetramer-sort yes amplicon-seq effector memory T cells T1D T1D_7 chip0514_89943 PBMC +11518 CAMSRSNFGNEKLTF TRAV12-3*01 TRAJ48*01 HLA-A*02:01 B2M MHCI LLAGIGTVPI PGT HomoSapiens PMID:34811538 tetramer-sort yes amplicon-seq Naive T cells T1D T1D_8 chip0514_324225 PBMC +11519 CSAITGGTDTQYF TRBV29-1*01 TRBJ2-3*01 HLA-A*02:01 B2M MHCI NLFLFLFAV IGRP HomoSapiens PMID:34811538 tetramer-sort yes amplicon-seq Naive T cells T1D T1D_7 chip0514_349990 PBMC +11520 CASSQATGYGYTF TRBV3-1*01 TRBJ1-2*01 HLA-A*02:01 B2M MHCI YVLDHLIVV BRLF1 EBV PMID:34811538 tetramer-sort yes amplicon-seq effector T cells T1D T1D_7 chip0514_173243 PBMC +11521 CASSQGQPEQYF TRBV7-9*01 TRBJ2-7*01 HLA-A*02:01 B2M MHCI LLAGIGTVPI PGT HomoSapiens PMID:34811538 tetramer-sort yes amplicon-seq Naive T cells T1D T1D_7 chip0514_586941 PBMC +11522 CASSSLSGSGQPQHF TRBV28*01 TRBJ1-5*01 HLA-A*02:01 B2M MHCI YVLDHLIVV BRLF1 EBV PMID:34811538 tetramer-sort yes amplicon-seq effector memory T cells T1D T1D_7 chip0514_48723 PBMC +11523 CLPEGVac?GFNRFCF TRAV4*01 TRAJ21*01 CASSQDAWGAYEQYF TRBV3-1*01 TRBJ2-7*01 HLA-A*02:01 B2M MHCI ILSAHVATA ZNT8 HomoSapiens PMID:34811538 tetramer-sort yes amplicon-seq Naive T cells tet_neg chip0514_294182 PBMC +11524 CAVKDTDKLIF TRAV8-1*01 TRAJ34*01 CASSQDRREGDTGELFF TRBV4-3*01 TRBJ2-2*01 HLA-A*02:01 B2M MHCI YVLDHLIVV BRLF1 EBV PMID:34811538 tetramer-sort yes amplicon-seq effector memory T cells T1D T1D_7 chip0514_449431 PBMC +11525 CAVNIPVIF TRAV12-2*01 TRAJ30*01 CSTTGDYTEAFF TRBV29-1*01 TRBJ1-1*01 HLA-A*02:01 B2M MHCI ALAGIGILTV MART1 HomoSapiens PMID:34811538 tetramer-sort yes amplicon-seq Naive T cells T1D T1D_8 chip0514_707034 PBMC +11526 CAVSGSGKLIF TRAV29/DV5*01 TRAJ23*01 CSATKTDNYGYTF TRBV20-1*01 TRBJ1-2*01 HLA-A*02:01 B2M MHCI YVLDHLIVV BRLF1 EBV PMID:34811538 tetramer-sort yes amplicon-seq effector memory T cells T1D T1D_7 chip0514_612141 PBMC +11527 CAVGGGSQGNLIF TRAV12-2*01 TRAJ42*01 FARSDAYSFGYGYTF TRBV6-1*01 TRBJ1-2*01 HLA-A*02:01 B2M MHCI ALAGIGILTV MART1 HomoSapiens PMID:34811538 tetramer-sort yes amplicon-seq Naive T cells T1D T1D_7 chip0514_179035 PBMC +11528 CAVNDTDKLIF TRAV8-1*01 TRAJ34*01 CATSGWQGSEETQYF TRBV24-1*01 TRBJ2-5*01 HLA-A*02:01 B2M MHCI YVLDHLIVV BRLF1 EBV PMID:34811538 tetramer-sort yes amplicon-seq effector memory T cells T1D T1D_7 chip0514_67120 PBMC +11529 YAVDSSYKLIF TRAV12-2*01 TRAJ12*01 CASHSPGAETQYF TRBV6-2*01,TRBV6-3*01 TRBJ2-5*01 HLA-A*02:01 B2M MHCI ALAGIGILTV MART1 HomoSapiens PMID:34811538 tetramer-sort yes amplicon-seq central memory T cells T1D T1D_7 chip0514_89348 PBMC +11530 CAGTTEDSNYQLIW TRAV25*01 TRAJ33*01 CSARDLRAGRAYEQYF TRBV20-1*01 TRBJ2-7*01 HLA-A*02:01 B2M MHCI CLGGLLTMV LMP2A EBV PMID:34811538 tetramer-sort yes amplicon-seq central memory T cells T1D T1D_8 chip0514_280987 PBMC +11531 CVVSAENQGGKLIF TRAV10*01 TRAJ23*01 CASSVWTGHNEQFF TRBV6-4*01 TRBJ2-1*01 HLA-A*02:01 B2M MHCI GLCTLVAML BLMF1 EBV PMID:34811538 tetramer-sort yes amplicon-seq effector T cells T1D T1D_7 chip0514_465529 PBMC +11532 CASSPGTGGADTQYF TRBV6-2*01,TRBV6-3*01 TRBJ2-3*01 HLA-A*02:01 B2M MHCI YVLDHLIVV BRLF1 EBV PMID:34811538 tetramer-sort yes amplicon-seq transitional T cells between effector and memory populations T1D T1D_7 chip0514_369897 PBMC +11533 CAMRDEDYKLSF TRAV14/DV4*01 TRAJ20*01 HLA-A*02:01 B2M MHCI RGPGRAFVTI GP160 HIV-1 PMID:34811538 tetramer-sort yes amplicon-seq effector T cells T1D T1D_7 chip0514_227563 PBMC +11534 CVVN*GPKta??gaAGGFKTIF TRAV12-1*01 TRAJ9*01 CASSFSPGQGSAGELFF TRBV5-6*01 TRBJ2-2*01 HLA-A*02:01 B2M MHCI GIIYIIYKL P3A CoxsackievirusB PMID:34811538 tetramer-sort yes amplicon-seq Naive T cells T1D T1D_7 chip0514_672439 PBMC +11535 CAYIGDSNYQLIW TRAV38-1*01 TRAJ33*01 CASSLDGLAGDNEQFF TRBV5-4*01 TRBJ2-1*01 HLA-A*02:01 B2M MHCI RGPGRAFVTI GP160 HIV-1 PMID:34811538 tetramer-sort yes amplicon-seq Naive T cells T1D T1D_7 chip0514_766274 PBMC +11536 CAMNNFNKFYF TRAV12-3*01 TRAJ21*01 HLA-A*02:01 B2M MHCI YVLDHLIVV BRLF1 EBV PMID:34811538 tetramer-sort yes amplicon-seq effector T cells T1D T1D_7 chip0514_79536 PBMC +11537 CAVRDRSGYNKLIF TRAV3*01 TRAJ4*01 CASSPQTGTQPQHF TRBV28*01 TRBJ1-5*01 HLA-A*02:01 B2M MHCI YVLDHLIVV BRLF1 EBV PMID:34811538 tetramer-sort yes amplicon-seq effector T cells T1D T1D_7 chip0514_685765 PBMC +11538 CALDGDSSSLLFF TRAV12-2*01 TRAJ12*01 CASSSQTGGELFF TRBV9*01 TRBJ2-2*01 HLA-A*02:01 B2M MHCI SLNYSGVKEL ZNT8 HomoSapiens PMID:34811538 tetramer-sort yes amplicon-seq Naive T cells T1D T1D_8 chip0514_53972 PBMC +11539 CTGGISNFGNERLTF TRAV21*01 TRAJ48*01 CASSSPPPGQVVSTDTQYF TRBV11-1*01 TRBJ2-3*01 HLA-A*02:01 B2M MHCI LLAGIGTVPI PGT HomoSapiens PMID:34811538 tetramer-sort yes amplicon-seq Naive T cells T1D T1D_7 chip0514_748745 PBMC +11540 CASSFNVGTVPYEQYF TRBV27*01 TRBJ2-7*01 HLA-A*02:01 B2M MHCI YVLDHLIVV BRLF1 EBV PMID:34811538 tetramer-sort yes amplicon-seq effector T cells T1D T1D_7 chip0514_646056 PBMC +11541 CAVKGTDKLIF TRAV8-1*01 TRAJ34*01 CATRKPGQGIGGANVLTF TRBV24-1*01 TRBJ2-6*01 HLA-A*02:01 B2M MHCI YVLDHLIVV BRLF1 EBV PMID:34811538 tetramer-sort yes amplicon-seq effector memory T cells T1D T1D_7 chip0514_414664 PBMC +11542 CATAANYGGATNKLIF TRAV17*01 TRAJ32*01 CASSVGAGNTIYF TRBV9*01 TRBJ1-3*01 HLA-A*02:01 B2M MHCI LLNATDIAV GP160 HIV-1 PMID:34811538 tetramer-sort yes amplicon-seq Naive T cells T1D T1D_7 chip0514_221932 PBMC +11543 CASSSLSGSGQPQHF TRBV28*01 TRBJ1-5*01 HLA-A*02:01 B2M MHCI YVLDHLIVV BRLF1 EBV PMID:34811538 tetramer-sort yes amplicon-seq effector memory T cells T1D T1D_7 chip0514_89763 PBMC +11544 CAVA*QCtg??gcNNRKLIW TRAV8-3*01,TRAV2*01 TRAJ38*01 CASSPPGLIGDTQYF TRBV27*01 TRBJ2-3*01 HLA-A*02:01 B2M MHCI YVLDHLIVV BRLF1 EBV PMID:34811538 tetramer-sort yes amplicon-seq effector T cells T1D T1D_7 chip0514_412605 PBMC +11545 CAMSLSNFGNEKLTF TRAV12-3*01 TRAJ48*01 CSAKGGAGETQYF TRBV20-1*01 TRBJ2-5*01 HLA-A*02:01 B2M MHCI LLAGIGTVPI PGT HomoSapiens PMID:34811538 tetramer-sort yes amplicon-seq Naive T cells T1D T1D_8 chip0514_853112 PBMC +11546 CAESSGASGKLIF TRAV5*01 TRAJ37*01 CSVGTGGTNEKLFF TRBV29-1*01 TRBJ1-4*01 HLA-A*02:01 B2M MHCI GLCTLVAML BLMF1 EBV PMID:34811538 tetramer-sort yes amplicon-seq effector T cells T1D T1D_8 chip0514_225713 PBMC +11547 CAVPDNNARLMF TRAV8-1*01 TRAJ31*01 CASSLAGGQGEQYF TRBV5-1*01 TRBJ2-7*01 HLA-A*02:01 B2M MHCI YVLDHLIVV BRLF1 EBV PMID:34811538 tetramer-sort yes amplicon-seq effector memory T cells T1D T1D_7 chip0514_30546 PBMC +11548 CASTHGGELFF TRBV27*01 TRBJ2-2*01 HLA-A*02:01 B2M MHCI CLGGLLTMV LMP2A EBV PMID:34811538 tetramer-sort yes amplicon-seq transitional T cells between effector and memory populations T1D T1D_7 chip0514_62491 PBMC +11550 CAARGGSEKLVF TRAV39*01 TRAJ57*01 CASSGYGTSGRVTDTQYF TRBV2*01 TRBJ2-3*01 HLA-A*02:01 B2M MHCI KMYAFTLES ZNT8 HomoSapiens PMID:34811538 tetramer-sort yes amplicon-seq central memory T cells T1D T1D_7 chip0514_300052 PBMC +11551 CAVTDSSASKIIF TRAV12-2*01 TRAJ3*01 CASSSGNIYEQYF TRBV2*01 TRBJ2-7*01 HLA-A*02:01 B2M MHCI ALAGIGILTV MART1 HomoSapiens PMID:34811538 tetramer-sort yes amplicon-seq Naive T cells T1D T1D_8 chip0514_136764 PBMC +11552 CASSSLSGSGQPQHF TRBV28*01 TRBJ1-5*01 HLA-A*02:01 B2M MHCI YVLDHLIVV BRLF1 EBV PMID:34811538 tetramer-sort yes amplicon-seq effector T cells T1D T1D_7 chip0514_793947 PBMC +11554 CAWARGGSYNEQFF TRBV30*01 TRBJ2-1*01 HLA-A*02:01 B2M MHCI RGPGRAFVTI GP160 HIV-1 PMID:34811538 tetramer-sort yes amplicon-seq Naive T cells T1D T1D_7 chip0514_354446 PBMC +11556 CAVSTDKLIF TRAV20*01 TRAJ34*01 CALEGNGELFF TRBV19*01 TRBJ2-2*01 HLA-A*02:01 B2M MHCI GILGFVFTL M1 InfluenzaA PMID:34811538 tetramer-sort yes amplicon-seq Naive T cells T1D T1D_7 chip0514_564605 PBMC +11557 CSVGTGGTNEKLFF TRBV29-1*01 TRBJ1-4*01 HLA-A*02:01 B2M MHCI GLCTLVAML BLMF1 EBV PMID:34811538 tetramer-sort yes amplicon-seq effector T cells T1D T1D_7 chip0514_235749 PBMC +11558 CNNNHDMRF TRAV27*01 TRAJ43*01 CASGLGQGSADTQYF TRBV7-9*01 TRBJ2-3*01 HLA-A*02:01 B2M MHCI YVLDHLIVV BRLF1 EBV PMID:34811538 tetramer-sort yes amplicon-seq effector T cells T1D T1D_8 chip0514_688132 PBMC +11559 CALYNTDKLIF TRAV9-2*01 TRAJ34*01 RASSPTSGSIYEQYF TRBV3-1*01 TRBJ2-7*01 HLA-A*02:01 B2M MHCI GLCTLVAML BLMF1 EBV PMID:34811538 tetramer-sort yes amplicon-seq effector T cells T1D T1D_8 chip0514_381124 PBMC +11560 CALKNTDKLIF TRAV16*01 TRAJ34*01 CASSLSVLSYNEQFF TRBV27*01 TRBJ2-1*01 HLA-A*02:01 B2M MHCI YVLDHLIVV BRLF1 EBV PMID:34811538 tetramer-sort yes amplicon-seq effector memory T cells T1D T1D_8 chip0514_262550 PBMC +11562 CLVDENTGNQFYF TRAV4*01 TRAJ49*01 HLA-A*02:01 B2M MHCI CINGVCWTV NS3 HCV PMID:34811538 tetramer-sort yes amplicon-seq Naive T cells T1D T1D_7 chip0514_583606 PBMC +11563 CAGTTEDSNYQLIW TRAV25*01 TRAJ33*01 CSARDLRAGRAYEQYF TRBV20-1*01 TRBJ2-7*01 HLA-A*02:01 B2M MHCI CLGGLLTMV LMP2A EBV PMID:34811538 tetramer-sort yes amplicon-seq central memory T cells T1D T1D_8 chip0514_69262 PBMC +11564 CAVKDKGRLIY TRAV8-1*01 TRAJ34*01 CASSLFSNEQFF TRBV28*01 TRBJ2-1*01 HLA-A*02:01 B2M MHCI YVLDHLIVV BRLF1 EBV PMID:34811538 tetramer-sort yes amplicon-seq effector memory T cells T1D T1D_7 chip0514_850508 PBMC +11565 CASSQWDTHTGELFF TRBV4-1*01 TRBJ2-2*01 HLA-A*02:01 B2M MHCI FLLSLFSLWL ZNT8 HomoSapiens PMID:34811538 tetramer-sort yes amplicon-seq Naive T cells T1D T1D_7 chip0514_614759 PBMC +11566 CAVHTGGFKTIF TRAV20*01 TRAJ9*01 CASSKEAETEYF TRBV5-4*01 TRBJ2-7*01 HLA-A*02:01 B2M MHCI YVLDHLIVV BRLF1 EBV PMID:34811538 tetramer-sort yes amplicon-seq transitional T cells between effector and memory populations T1D T1D_7 chip0514_202912 PBMC +11567 CASSPKVEWQENTEAFF TRBV5-6*01 TRBJ1-1*01 HLA-A*02:01 B2M MHCI LLAGIGTVPI PGT HomoSapiens PMID:34811538 tetramer-sort yes amplicon-seq Naive T cells T1D T1D_7 chip0514_623786 PBMC +11568 CAVKDTDKLIF TRAV8-1*01 TRAJ34*01 HLA-A*02:01 B2M MHCI YVLDHLIVV BRLF1 EBV PMID:34811538 tetramer-sort yes amplicon-seq effector T cells T1D T1D_8 chip0514_36963 PBMC +11569 CVVSDSNDYKLSF TRAV12-1*01 TRAJ20*01 CATNERETDTQYF TRBV24-1*01 TRBJ2-3*01 HLA-A*02:01 B2M MHCI KLVALGINAV NS3 HCV PMID:34811538 tetramer-sort yes amplicon-seq natural killer-like T cells T1D T1D_8 chip0514_74372 PBMC +11570 CAVEDQGHNFNKFYF TRAV2*01 TRAJ21*01 CASSSQFGGKETQYF TRBV7-8*01 TRBJ2-5*01 HLA-A*02:01 B2M MHCI RLLPLLALL PREINS HomoSapiens PMID:34811538 tetramer-sort yes amplicon-seq effector memory T cells T1D T1D_7 chip0514_41658 PBMC +11571 CVGSRGGGSYIPTF TRAV12-1*01 TRAJ6*01 CASSQDSSEAFF TRBV4-2*01 TRBJ1-1*01 HLA-A*02:01 B2M MHCI YLQQNWWTL LMP1 EBV PMID:34811538 tetramer-sort yes amplicon-seq central memory T cells T1D T1D_7 chip0514_619445 PBMC +11572 CAFMRHTGTASKITF TRAV38-1*01 TRAJ44*01 HLA-A*02:01 B2M MHCI AIIRILQQL VPR HIV-1 PMID:34811538 tetramer-sort yes amplicon-seq Naive T cells T1D T1D_7 chip0514_288420 PBMC +11573 CAVKDTDKLIF TRAV8-1*01 TRAJ34*01 CATSGTSEGTDTQYF TRBV24-1*01 TRBJ2-3*01 HLA-A*02:01 B2M MHCI YVLDHLIVV BRLF1 EBV PMID:34811538 tetramer-sort yes amplicon-seq effector memory T cells T1D T1D_7 chip0514_551013 PBMC +11574 CAVSGVYNFNKFYF TRAV8-6*01 TRAJ21*01 CASSGGAGGGYNEQFF TRBV9*01 TRBJ2-1*01 HLA-A*02:01 B2M MHCI FLWSVFWLI IGRP HomoSapiens PMID:34811538 tetramer-sort yes amplicon-seq Naive T cells T1D T1D_7 chip0514_262941 PBMC +11575 CIVRVKVR??gAGSYPLTF TRAV26-1*01 TRAJ28*01 HLA-A*02:01 B2M MHCI LLAGIGTVPI PGT HomoSapiens PMID:34811538 tetramer-sort yes amplicon-seq Naive T cells T1D T1D_7 chip0514_93234 PBMC +11576 CASSSLSGSGQPQHF TRBV28*01 TRBJ1-5*01 HLA-A*02:01 B2M MHCI YVLDHLIVV BRLF1 EBV PMID:34811538 tetramer-sort yes amplicon-seq effector T cells T1D T1D_7 chip0514_193733 PBMC +11577 CASSQGGHSYEQYF TRBV4-1*01 TRBJ2-7*01 HLA-A*02:01 B2M MHCI ALGIGILTV MART1 HomoSapiens PMID:34811538 tetramer-sort yes amplicon-seq Naive T cells T1D T1D_7 chip0514_277123 PBMC +11578 CASSLGWTGELFF TRBV13*01 TRBJ2-2*01 HLA-A*02:01 B2M MHCI YLLPRRGPRL POL HCV PMID:34811538 tetramer-sort yes amplicon-seq Naive T cells T1D T1D_8 chip0514_726182 PBMC +11579 CAMSLSNFGLVSLSF TRAV12-3*01 TRAJ48*01 HLA-A*02:01 B2M MHCI LLAGIGTVPI PGT HomoSapiens PMID:34811538 tetramer-sort yes amplicon-seq Naive T cells T1D T1D_7 chip0514_740518 PBMC +11581 CASSLGGQPQHF TRBV5-6*01 TRBJ1-5*01 HLA-A*02:01 B2M MHCI ALAGIGILTV MART1 HomoSapiens PMID:34811538 tetramer-sort yes amplicon-seq Naive T cells T1D T1D_7 chip0514_265967 PBMC +11582 CAMRGSNFGNEKLTF TRAV12-3*01 TRAJ48*01 CASNGPTRPQDLEETQYF TRBV2*01 TRBJ2-5*01 HLA-A*02:01 B2M MHCI LLAGIGTVPI PGT HomoSapiens PMID:34811538 tetramer-sort yes amplicon-seq Naive T cells T1D T1D_7 chip0514_350874 PBMC +11583 CAVSSGYSTLTF TRAV8-1*01 TRAJ11*01 HLA-A*02:01 B2M MHCI YVLDHLIVV BRLF1 EBV PMID:34811538 tetramer-sort yes amplicon-seq effector memory T cells T1D T1D_7 chip0514_766227 PBMC +11584 CLGPGAtg??ggRCPLSF TRAV4*01 TRAJ28*01 CASSQDETGFLAGELFF TRBV14*01 TRBJ2-2*01 HLA-A*02:01 B2M MHCI YVLDHLIVV BRLF1 EBV PMID:34811538 tetramer-sort yes amplicon-seq effector memory T cells T1D T1D_7 chip0514_683226 PBMC +11585 CVVTPSNFGNEKLTF TRAV12-1*01 TRAJ48*01 CASSLLAGLLYNEQFF TRBV5-6*01 TRBJ2-1*01 HLA-A*02:01 B2M MHCI LLAGIGTVPI PGT HomoSapiens PMID:34811538 tetramer-sort yes amplicon-seq Naive T cells T1D T1D_8 chip0514_28800 PBMC +11586 CGTERENDYKLSF TRAV30*01 TRAJ20*01 CASSQPTENTEAFF TRBV7-2*01 TRBJ1-1*01 HLA-A*02:01 B2M MHCI RGPGRAFVTI GP160 HIV-1 PMID:34811538 tetramer-sort yes amplicon-seq Naive T cells T1D T1D_7 chip0514_567496 PBMC +11587 CASSPSGQGATYEQYF TRBV4-3*01 TRBJ2-7*01 HLA-A*02:01 B2M MHCI ALGIGILTV MART1 HomoSapiens PMID:34811538 tetramer-sort yes amplicon-seq Naive T cells T1D T1D_7 chip0514_264901 PBMC +11588 CAPRGEc?tYQKVTF TRAV13-1*01 TRAJ13*01 CASSSLSGSGQPQHF TRBV28*01 TRBJ1-5*01 HLA-A*02:01 B2M MHCI YVLDHLIVV BRLF1 EBV PMID:34811538 tetramer-sort yes amplicon-seq effector T cells T1D T1D_7 chip0514_552243 PBMC +11589 CAGRGSSNTGKLIF TRAV25*01 TRAJ37*01 CASSQEITSGETQYF TRBV3-1*01 TRBJ2-5*01 HLA-A*02:01 B2M MHCI YVLDHLIVV BRLF1 EBV PMID:34811538 tetramer-sort yes amplicon-seq effector T cells T1D T1D_8 chip0514_191253 PBMC +11590 CATSGWQGSEETQYF TRBV24-1*01 TRBJ2-5*01 HLA-A*02:01 B2M MHCI YVLDHLIVV BRLF1 EBV PMID:34811538 tetramer-sort yes amplicon-seq effector memory T cells T1D T1D_7 chip0514_204975 PBMC +11591 CASSIRSSDTQYF TRBV19*01 TRBJ2-3*01 HLA-A*02:01 B2M MHCI GILGFVFTL M1 InfluenzaA PMID:34811538 tetramer-sort yes amplicon-seq transitional T cells between effector and memory populations T1D T1D_8 chip0514_117556 PBMC +11592 CAMSISNFGNEKLTF TRAV12-3*01 TRAJ48*01 CARIRRGFSGGPQETQYF TRBV6-4*01 TRBJ2-5*01 HLA-A*02:01 B2M MHCI LLAGIGTVPI PGT HomoSapiens PMID:34811538 tetramer-sort yes amplicon-seq central memory T cells T1D T1D_7 chip0514_137699 PBMC +11593 CAET*VAg?tSNSKLTF TRAV13-2*01 TRAJ53*01 HLA-A*02:01 B2M MHCI ALWMRLLPL PREINS HomoSapiens PMID:34811538 tetramer-sort yes amplicon-seq Naive T cells T1D T1D_8 chip0514_778146 PBMC +11594 CALIRDSSYKLIF TRAV16*01 TRAJ12*01 CASSDQGRTRVYTGELFF TRBV2*01 TRBJ2-2*01 HLA-A*02:01 B2M MHCI AIIRILQQL VPR HIV-1 PMID:34811538 tetramer-sort yes amplicon-seq Naive T cells T1D T1D_7 chip0514_733387 PBMC +11595 CVVNPGNQFYF TRAV12-1*01 TRAJ49*01 CASSPPVGYEQYF TRBV9*01 TRBJ2-7*01 HLA-A*02:01 B2M MHCI ELAEYLYNI GAD65 HomoSapiens PMID:34811538 tetramer-sort yes amplicon-seq Naive T cells T1D T1D_7 chip0514_223322 PBMC +11596 CGTAGA*RYSTTTF TRAV17*01 TRAJ11*01 CASSLGLgc??ggDSYEQYF TRBV7-2*01 TRBJ2-7*01 HLA-A*02:01 B2M MHCI FLYALALLL LMP2 EBV PMID:34811538 tetramer-sort yes amplicon-seq effector memory T cells T1D T1D_7 chip0514_708156 PBMC +11598 CASSQLGSGMEDTQYF TRBV3-1*01 TRBJ2-3*01 HLA-A*02:01 B2M MHCI GIIYIIYKL P3A CoxsackievirusB PMID:34811538 tetramer-sort yes amplicon-seq Naive T cells T1D T1D_7 chip0514_803126 PBMC +11599 CAYGNNNDMRF TRAV38-1*01 TRAJ43*01 CASSSSGRPDTQYF TRBV7-8*01 TRBJ2-3*01 HLA-A*02:01 B2M MHCI AAGIGILTV MART1 HomoSapiens PMID:34811538 tetramer-sort yes amplicon-seq Naive T cells T1D T1D_7 chip0514_644658 PBMC +11600 CASSPGTGTYEQYF TRBV27*01 TRBJ2-7*01 HLA-A*02:01 B2M MHCI LLAGIGTVPI PGT HomoSapiens PMID:34811538 tetramer-sort yes amplicon-seq Naive T cells T1D T1D_7 chip0514_165846 PBMC +11602 CAVNPGFQKLVF TRAV12-2*01 TRAJ8*01 CSAMQGSGYTF TRBV20-1*01 TRBJ1-2*01 HLA-A*02:01 B2M MHCI ALAGIGILTV MART1 HomoSapiens PMID:34811538 tetramer-sort yes amplicon-seq Naive T cells T1D T1D_8 chip0514_329096 PBMC +11603 LCQQRDag??ggSQPQHF TRBV6-2*01,TRBV6-3*01 TRBJ1-5*01 HLA-A*02:01 B2M MHCI YVLDHLIVV BRLF1 EBV PMID:34811538 tetramer-sort yes amplicon-seq effector memory T cells T1D T1D_7 chip0514_564164 PBMC +11604 CAVNGFSGGYQKVTF TRAV8-1*01 TRAJ13*01 CASSLEGSYEQYF TRBV14*01 TRBJ2-7*01 HLA-A*02:01 B2M MHCI YLLEMLWRL LMP1 EBV PMID:34811538 tetramer-sort yes amplicon-seq Naive T cells T1D T1D_7 chip0514_289779 PBMC +11605 CALSDLDGQTLLF TRAV19*01 TRAJ16*01 CSARGAIHPTYEQYF TRBV20-1*01 TRBJ2-7*01 HLA-A*02:01 B2M MHCI FMYSDFHFI PA InfluenzaA PMID:34811538 tetramer-sort yes amplicon-seq central memory T cells T1D T1D_7 chip0514_611804 PBMC +11606 CAMSYSNFGNEKLTF TRAV12-3*01 TRAJ48*01 HLA-A*02:01 B2M MHCI LLAGIGTVPI PGT HomoSapiens PMID:34811538 tetramer-sort yes amplicon-seq Naive T cells T1D T1D_7 chip0514_322942 PBMC +11607 CAVHDTDKLIF TRAV8-1*01 TRAJ34*01 CATSGWQGSEETQYF TRBV24-1*01 TRBJ2-5*01 HLA-A*02:01 B2M MHCI YVLDHLIVV BRLF1 EBV PMID:34811538 tetramer-sort yes amplicon-seq transitional T cells between effector and memory populations T1D T1D_7 chip0514_607139 PBMC +11608 CAMSFSNFGHEALPF TRAV12-3*01 TRAJ48*01 CASSGDGMNTEAFF TRBV10-2*01 TRBJ1-1*01 HLA-A*02:01 B2M MHCI CLGGLLTMV LMP2A EBV PMID:34811538 tetramer-sort yes amplicon-seq effector memory T cells T1D T1D_7 chip0514_124148 PBMC +11609 CVVSAENQGGKLIF TRAV10*01 TRAJ23*01 CASSVWTGHNEQFF TRBV6-4*01 TRBJ2-1*01 HLA-A*02:01 B2M MHCI GLCTLVAML BLMF1 EBV PMID:34811538 tetramer-sort yes amplicon-seq effector T cells T1D T1D_7 chip0514_161663 PBMC +11610 CSVGSGGTNEKLFF TRBV29-1*01 TRBJ1-4*01 HLA-A*02:01 B2M MHCI GLCTLVAML BLMF1 EBV PMID:34811538 tetramer-sort yes amplicon-seq effector memory T cells T1D T1D_7 chip0514_36532 PBMC +11611 CAVNMNSGNTPLVF TRAV12-2*01 TRAJ29*01 CASSPPGVGNQPQHF TRBV28*01 TRBJ1-5*01 HLA-A*02:01 B2M MHCI ALAGIGILTV MART1 HomoSapiens PMID:34811538 tetramer-sort yes amplicon-seq Naive T cells T1D T1D_7 chip0514_178566 PBMC +11612 CAVKDTDKLIF TRAV8-1*01 TRAJ34*01 CASSQVVGHGYTF TRBV3-1*01 TRBJ1-2*01 HLA-A*02:01 B2M MHCI YVLDHLIVV BRLF1 EBV PMID:34811538 tetramer-sort yes amplicon-seq effector T cells T1D T1D_7 chip0514_411440 PBMC +11613 CSATDSTYNEQFF TRBV20-1*01 TRBJ2-1*01 HLA-A*02:01 B2M MHCI YVLDHLIVV BRLF1 EBV PMID:34811538 tetramer-sort yes amplicon-seq effector memory T cells T1D T1D_7 chip0514_767808 PBMC +11614 CATDGASGYSTLTF TRAV17*01 TRAJ11*01 HLA-A*02:01 B2M MHCI FLYALALLL LMP2 EBV PMID:34811538 tetramer-sort yes amplicon-seq effector memory T cells T1D T1D_7 chip0514_575874 PBMC +11615 CASSSLSGSGQPQHF TRBV28*01 TRBJ1-5*01 HLA-A*02:01 B2M MHCI YVLDHLIVV BRLF1 EBV PMID:34811538 tetramer-sort yes amplicon-seq effector memory T cells T1D T1D_7 chip0514_679805 PBMC +11616 CASSVGGAWEQYF TRBV27*01 TRBJ2-7*01 HLA-A*02:01 B2M MHCI YVLDHLIVV BRLF1 EBV PMID:34811538 tetramer-sort yes amplicon-seq effector T cells T1D T1D_8 chip0514_677441 PBMC +11617 CASSLLYEQYF TRBV5-6*01 TRBJ2-7*01 HLA-A*02:01 B2M MHCI ALAGIGILTV MART1 HomoSapiens PMID:34811538 tetramer-sort yes amplicon-seq Naive T cells T1D T1D_7 chip0514_574341 PBMC +11618 CAMSASNFGNEKLTF TRAV12-3*01 TRAJ48*01 CASSLYGQGRTDTEAFF TRBV28*01 TRBJ1-1*01 HLA-A*02:01 B2M MHCI LLAGIGTVPI PGT HomoSapiens PMID:34811538 tetramer-sort yes amplicon-seq Naive T cells T1D T1D_7 chip0514_23448 PBMC +11619 CSSPGQGYNEQFF TRBV29-1*01 TRBJ2-1*01 HLA-A*02:01 B2M MHCI SLISGMWLL VP2 RotavirusA PMID:34811538 tetramer-sort yes amplicon-seq Naive T cells T1D T1D_8 chip0514_239564 PBMC +11620 CASSLSVNYGYTF TRBV12-3*01,TRBV12-4*01 TRBJ1-2*01 HLA-A*02:01 B2M MHCI VMNILLQYV GAD65 HomoSapiens PMID:34811538 tetramer-sort yes amplicon-seq Naive T cells T1D T1D_7 chip0514_140391 PBMC +11621 CAVPSGNTPLVF TRAV12-2*01 TRAJ29*01 CASSGPPHTGELFF TRBV7-7*01 TRBJ2-2*01 HLA-A*02:01 B2M MHCI LLAGIGTVPI PGT HomoSapiens PMID:34811538 tetramer-sort yes amplicon-seq Naive T cells T1D T1D_8 chip0514_359246 PBMC +11622 CAVDINARLMF TRAV12-2*01 TRAJ31*01 CATEGQANEQYF TRBV6-1*01 TRBJ2-7*01 HLA-A*02:01 B2M MHCI LLSLFSLWL ZNT8 HomoSapiens PMID:34811538 tetramer-sort yes amplicon-seq Naive T cells T1D T1D_7 chip0514_332656 PBMC +11623 CAVQATDKLIF TRAV8-1*01 TRAJ34*01 HLA-A*02:01 B2M MHCI YVLDHLIVV BRLF1 EBV PMID:34811538 tetramer-sort yes amplicon-seq transitional T cells between effector and memory populations T1D T1D_7 chip0514_422203 PBMC +11625 CASGGSYIPTF TRAV12-1*01 TRAJ6*01 CAACPGTENTGELFF TRBV10-2*01 TRBJ2-2*01 HLA-A*02:01 B2M MHCI KLVALGINAV NS3 HCV PMID:34811538 tetramer-sort yes amplicon-seq Naive T cells T1D T1D_7 chip0514_772864 PBMC +11627 CASSLVSGIGNTIYF TRBV11-2*01 TRBJ1-3*01 HLA-A*02:01 B2M MHCI RGPGRAFVTI GP160 HIV-1 PMID:34811538 tetramer-sort yes amplicon-seq Naive T cells T1D T1D_7 chip0514_207188 PBMC +11628 CADSASGKLMF TRAV29/DV5*01 TRAJ23*01 HLA-A*02:01 B2M MHCI YVLDHLIVV BRLF1 EBV PMID:34811538 tetramer-sort yes amplicon-seq effector memory T cells T1D T1D_7 chip0514_61937 PBMC +11629 CAVKGTDKLIF TRAV8-1*01 TRAJ34*01 LCHQKTGPG??gIGGANVLTF TRBV24-1*01 TRBJ2-6*01 HLA-A*02:01 B2M MHCI YVLDHLIVV BRLF1 EBV PMID:34811538 tetramer-sort yes amplicon-seq transitional T cells between effector and memory populations T1D T1D_7 chip0514_353092 PBMC +11630 CLVGKSPTGANNLFF TRAV4*01 TRAJ36*01 CASSLLQGRTDTQYF TRBV28*01 TRBJ2-3*01 HLA-A*02:01 B2M MHCI CINGVCWTV NS3 HCV PMID:34811538 tetramer-sort yes amplicon-seq transitional T cells between effector and memory populations T1D T1D_7 chip0514_540415 PBMC +11632 CAVTPNARLMF TRAV3*01 TRAJ31*01 CASSLSVSEFYNEQFF TRBV27*01 TRBJ2-1*01 HLA-A*02:01 B2M MHCI YVLDHLIVV BRLF1 EBV PMID:34811538 tetramer-sort yes amplicon-seq effector memory T cells T1D T1D_7 chip0514_828086 PBMC +11633 CAVEDLGSa?gGGYQKVPF TRAV2*01 TRAJ13*01 CASSLTVTEQFF TRBV27*01 TRBJ2-1*01 HLA-A*02:01 B2M MHCI FMYSDFHFI PA InfluenzaA PMID:34811538 tetramer-sort yes amplicon-seq transitional T cells between effector and memory populations T1D T1D_7 chip0514_726561 PBMC +11635 CATVGSSGYSTLTF TRAV17*01 TRAJ11*01 HLA-A*02:01 B2M MHCI FLYALALLL LMP2 EBV PMID:34811538 tetramer-sort yes amplicon-seq effector memory T cells T1D T1D_7 chip0514_173034 PBMC +11637 CASSFVDSPLHF TRBV7-9*01 TRBJ1-6*01 HLA-A*02:01 B2M MHCI HLVEALYLV PREINS HomoSapiens PMID:34811538 tetramer-sort yes amplicon-seq Naive T cells T1D T1D_7 chip0514_540409 PBMC +11638 CAISISNFGNEKLTF TRAV12-3*01 TRAJ48*01 CSAIGGQIEDTQYF TRBV20-1*01 TRBJ2-3*01 HLA-A*02:01 B2M MHCI LLAGIGTVPI PGT HomoSapiens PMID:34811538 tetramer-sort yes amplicon-seq Naive T cells T1D T1D_8 chip0514_148980 PBMC +11639 CAPAPLSGDAPVVF TRAV17*01 TRAJ29*01 CASSLAGGDTEAFF TRBV7-9*01 TRBJ1-1*01 HLA-A*02:01 B2M MHCI VVTGVLVYL ZNT8 HomoSapiens PMID:34811538 tetramer-sort yes amplicon-seq Naive T cells T1D T1D_8 chip0514_856613 PBMC +11640 CAMNRDDKIIF TRAV12-3*01 TRAJ30*01 CASSENGGPGETQYF TRBV9*01 TRBJ2-5*01 HLA-A*02:01 B2M MHCI KLVALGINAV NS3 HCV PMID:34811538 tetramer-sort yes amplicon-seq Naive T cells T1D T1D_7 chip0514_743812 PBMC +11641 CGTELMDSSYKLIF TRAV30*01 TRAJ12*01 HLA-A*02:01 B2M MHCI GIIYIIYKL P3A CoxsackievirusB PMID:34811538 tetramer-sort yes amplicon-seq central memory T cells T1D T1D_7 chip0514_128692 PBMC +11642 CASSESGRGQSETQYF TRBV10-1*01 TRBJ2-5*01 HLA-A*02:01 B2M MHCI RGPGRAFVTI GP160 HIV-1 PMID:34811538 tetramer-sort yes amplicon-seq effector T cells T1D T1D_7 chip0514_38693 PBMC +11643 CATGVGNEQYF TRBV19*01 TRBJ2-7*01 HLA-A*02:01 B2M MHCI VAANIVLTV ZNT8 HomoSapiens PMID:34811538 tetramer-sort yes amplicon-seq Naive T cells T1D T1D_7 chip0514_711079 PBMC +11644 CAMRDEDYKLSF TRAV14/DV4*01 TRAJ20*01 CASSDSGRGQSETQYF TRBV10-1*01 TRBJ2-5*01 HLA-A*02:01 B2M MHCI RGPGRAFVTI GP160 HIV-1 PMID:34811538 tetramer-sort yes amplicon-seq effector T cells T1D T1D_7 chip0514_33722 PBMC +11647 CAVNAGGGSQGNLIF TRAV8-1*01 TRAJ42*01 CASSVRSSYEQYF TRBV19*01 TRBJ2-7*01 HLA-A*02:01 B2M MHCI GILGFVFTL M1 InfluenzaA PMID:34811538 tetramer-sort yes amplicon-seq transitional T cells between effector and memory populations T1D T1D_8 chip0514_816233 PBMC +11648 CAAAAYNTDKLIF TRAV41*01 TRAJ34*01 CASALGTGELFF TRBV5-6*01 TRBJ2-2*01 HLA-A*02:01 B2M MHCI GIIYIIYKL P3A CoxsackievirusB PMID:34811538 tetramer-sort yes amplicon-seq Naive T cells T1D T1D_7 chip0514_622717 PBMC +11649 CAVKDTDKLIF TRAV8-1*01 TRAJ34*01 CASSQGAQIGQPQHF TRBV3-1*01 TRBJ1-5*01 HLA-A*02:01 B2M MHCI YVLDHLIVV BRLF1 EBV PMID:34811538 tetramer-sort yes amplicon-seq effector T cells T1D T1D_8 chip0514_764121 PBMC +11650 CASSQAGGGVQDTQYF TRBV4-1*01 TRBJ2-3*01 HLA-A*02:01 B2M MHCI YVLDHLIVV BRLF1 EBV PMID:34811538 tetramer-sort yes amplicon-seq effector memory T cells T1D T1D_7 chip0514_630815 PBMC +11651 CGQTHNQGGQLIF TRAV38-1*01 TRAJ23*01 CASSLPADSEETQYF TRBV13*01 TRBJ2-5*01 HLA-A*02:01 B2M MHCI LLFNILGGWV NS4B HCV PMID:34811538 tetramer-sort yes amplicon-seq Naive T cells T1D T1D_7 chip0514_579821 PBMC +11652 CAMSLGGYNKLIF TRAV12-3*01 TRAJ4*01 HLA-A*02:01 B2M MHCI LLAGIGTVPI PGT HomoSapiens PMID:34811538 tetramer-sort yes amplicon-seq Naive T cells T1D T1D_7 chip0514_197093 PBMC +11654 CAVKDTDKLIF TRAV8-1*01 TRAJ34*01 HLA-A*02:01 B2M MHCI YVLDHLIVV BRLF1 EBV PMID:34811538 tetramer-sort yes amplicon-seq effector memory T cells T1D T1D_7 chip0514_561709 PBMC +11655 CAVRESGGSYIPTF TRAV8-1*01 TRAJ6*01 CASNPAASGSEQYF TRBV4-3*01 TRBJ2-7*01 HLA-A*02:01 B2M MHCI FMYSDFHFI PA InfluenzaA PMID:34811538 tetramer-sort yes amplicon-seq Naive T cells T1D T1D_7 chip0514_722184 PBMC +11656 CSARGSTFYEQYF TRBV20-1*01 TRBJ2-7*01 HLA-A*02:01 B2M MHCI YVLDHLIVV BRLF1 EBV PMID:34811538 tetramer-sort yes amplicon-seq effector memory T cells T1D T1D_7 chip0514_393944 PBMC +11657 CASSSLSGSGQPQHF TRBV28*01 TRBJ1-5*01 HLA-A*02:01 B2M MHCI YVLDHLIVV BRLF1 EBV PMID:34811538 tetramer-sort yes amplicon-seq effector memory T cells T1D T1D_7 chip0514_281340 PBMC +11658 CAMGRGADGLTF TRAV12-3*01 TRAJ45*01 CASSQGSLSASNQPQHF TRBV3-1*01 TRBJ1-5*01 HLA-A*02:01 B2M MHCI LLAGIGTVPI PGT HomoSapiens PMID:34811538 tetramer-sort yes amplicon-seq Naive T cells T1D T1D_7 chip0514_586870 PBMC +11660 CAMGISNFGNEKLTF TRAV12-3*01 TRAJ48*01 CASSMENNEQFF TRBV19*01 TRBJ2-1*01 HLA-A*02:01 B2M MHCI LLAGIGTVPI PGT HomoSapiens PMID:34811538 tetramer-sort yes amplicon-seq Naive T cells T1D T1D_7 chip0514_532550 PBMC +11661 CASSSLSGSGQPQHF TRBV28*01 TRBJ1-5*01 HLA-A*02:01 B2M MHCI YVLDHLIVV BRLF1 EBV PMID:34811538 tetramer-sort yes amplicon-seq effector memory T cells T1D T1D_7 chip0514_877889 PBMC +11662 CAMSISDFGNEKLTF TRAV12-3*01 TRAJ48*01 CASSQEGLAMETQYF TRBV7-2*01 TRBJ2-5*01 HLA-A*02:01 B2M MHCI LLAGIGTVPI PGT HomoSapiens PMID:34811538 tetramer-sort yes amplicon-seq Naive T cells T1D T1D_8 chip0514_677049 PBMC +11663 CASSLVAGDFNEQYF TRBV5-5*01 TRBJ2-7*01 HLA-A*02:01 B2M MHCI VVTGVLVYL ZNT8 HomoSapiens PMID:34811538 tetramer-sort yes amplicon-seq transitional T cells between effector and memory populations T1D T1D_7 chip0514_588183 PBMC +11664 CAVKDTDKLIF TRAV8-1*01 TRAJ34*01 CASSQALITGELFF TRBV3-1*01 TRBJ2-2*01 HLA-A*02:01 B2M MHCI YVLDHLIVV BRLF1 EBV PMID:34811538 tetramer-sort yes amplicon-seq effector memory T cells T1D T1D_8 chip0514_534727 PBMC +11665 CAVEGFQKLVF TRAV12-2*01 TRAJ8*01 HLA-A*02:01 B2M MHCI LLAGIGTVPI PGT HomoSapiens PMID:34811538 tetramer-sort yes amplicon-seq Naive T cells T1D T1D_7 chip0514_830156 PBMC +11666 CASSSLSGSGQPQHF TRBV28*01 TRBJ1-5*01 HLA-A*02:01 B2M MHCI YVLDHLIVV BRLF1 EBV PMID:34811538 tetramer-sort yes amplicon-seq effector memory T cells T1D T1D_7 chip0514_140562 PBMC +11667 CPPPAALQGAPKLVF TRAV17*01 TRAJ54*01 HLA-A*02:01 B2M MHCI ALWMRLLPL PREINS HomoSapiens PMID:34811538 tetramer-sort yes amplicon-seq Naive T cells T1D T1D_7 chip0514_374331 PBMC +11668 CAMDSSYKLIF TRAV12-3*01 TRAJ12*01 CASSGAGGANTGELSF TRBV9*01 TRBJ2-2*01 HLA-A*02:01 B2M MHCI LLSLFSLWL ZNT8 HomoSapiens PMID:34811538 tetramer-sort yes amplicon-seq Naive T cells T1D T1D_8 chip0514_822323 PBMC +11669 CAVREGATNKLIF TRAV12-2*01 TRAJ32*01 CSVESEETRYEQYF TRBV29-1*01 TRBJ2-7*01 HLA-A*02:01 B2M MHCI GIIYIIYKL P3A CoxsackievirusB PMID:34811538 tetramer-sort yes amplicon-seq Naive T cells T1D T1D_7 chip0514_376896 PBMC +11670 CAVNILRAGGTSYGKLTF TRAV12-2*01 TRAJ52*01 CASSPPGQGGYGYTF TRBV12-3*01,TRBV12-4*01 TRBJ1-2*01 HLA-A*02:01 B2M MHCI MLYQHLLPL INSDRIP HomoSapiens PMID:34811538 tetramer-sort yes amplicon-seq Naive T cells T1D T1D_7 chip0514_562488 PBMC +11671 CALMF TRAV3*01 TRAJ15*01 CSVGGGGGAGYEQYF TRBV29-1*01 TRBJ2-7*01 HLA-A*02:01 B2M MHCI LLFNILGGWV NS4B HCV PMID:34811538 tetramer-sort yes amplicon-seq Naive T cells T1D T1D_7 chip0514_259393 PBMC +11672 CAIGKSNFGNEKLTF TRAV12-3*01 TRAJ48*01 CASSSQEGDNEQFF TRBV28*01 TRBJ2-1*01 HLA-A*02:01 B2M MHCI LLAGIGTVPI PGT HomoSapiens PMID:34811538 tetramer-sort yes amplicon-seq Naive T cells T1D T1D_7 chip0514_626526 PBMC +11673 CGTLNFGNEKLTF TRAV30*01 TRAJ48*01 CASSVQGLDNSPLHF TRBV2*01 TRBJ1-6*01 HLA-A*02:01 B2M MHCI RLLPLLALL PREINS HomoSapiens PMID:34811538 tetramer-sort yes amplicon-seq Naive T cells T1D T1D_7 chip0514_522661 PBMC +11674 CASNKTQGNQPQHF TRBV12-3*01,TRBV12-4*01 TRBJ1-5*01 HLA-A*02:01 B2M MHCI SLYQLENYC PREINS HomoSapiens PMID:34811538 tetramer-sort yes amplicon-seq Naive T cells T1D T1D_8 chip0514_376753 PBMC +11675 CAMSRSNFGNEKLTF TRAV12-3*01 TRAJ48*01 CASSIGGAGGTGELFF TRBV19*01 TRBJ2-2*01 HLA-A*02:01 B2M MHCI LLAGIGTVPI PGT HomoSapiens PMID:34811538 tetramer-sort yes amplicon-seq Naive T cells T1D T1D_7 chip0514_444812 PBMC +11677 CALKDTDKLIF TRAV16*01 TRAJ34*01 CATSDWLTNEQFF TRBV24-1*01 TRBJ2-1*01 HLA-A*02:01 B2M MHCI YVLDHLIVV BRLF1 EBV PMID:34811538 tetramer-sort yes amplicon-seq effector T cells T1D T1D_8 chip0514_271977 PBMC +11678 CAFTGFGDSNSGYALNF TRAV38-1*01 TRAJ41*01 CASSWRDSYNEQFF TRBV13*01 TRBJ2-1*01 HLA-A*02:01 B2M MHCI RGPGRAFVTI GP160 HIV-1 PMID:34811538 tetramer-sort yes amplicon-seq Naive T cells T1D T1D_7 chip0514_34794 PBMC +11679 CATERPSRHQPQHF TRBV28*01 TRBJ1-5*01 HLA-A*02:01 B2M MHCI GILGFVFTL M1 InfluenzaA PMID:34811538 tetramer-sort yes amplicon-seq Naive T cells T1D T1D_7 chip0514_571312 PBMC +11680 CAGIGag??ccQKLVF TRAV36/DV7*01 TRAJ54*01 CSASDGRNTEAFF TRBV20-1*01 TRBJ1-1*01 HLA-A*02:01 B2M MHCI LLSLFSLWL ZNT8 HomoSapiens PMID:34811538 tetramer-sort yes amplicon-seq Naive T cells T1D T1D_8 chip0514_585331 PBMC +11681 CAVDPGTASKLTF TRAV39*01 TRAJ44*01 CAWSVGRGYEQFF TRBV30*01 TRBJ2-1*01 HLA-A*02:01 B2M MHCI LLNATDIAV GP160 HIV-1 PMID:34811538 tetramer-sort yes amplicon-seq Naive T cells T1D T1D_7 chip0514_192003 PBMC +11683 CASSESGRGQSETQYF TRBV10-1*01 TRBJ2-5*01 HLA-A*02:01 B2M MHCI RGPGRAFVTI GP160 HIV-1 PMID:34811538 tetramer-sort yes amplicon-seq effector T cells T1D T1D_7 chip0514_584266 PBMC +11684 CASSLQGGNTQYF TRBV6-5*01 TRBJ2-3*01 HLA-A*02:01 B2M MHCI FLYALALLL LMP2 EBV PMID:34811538 tetramer-sort yes amplicon-seq effector memory T cells T1D T1D_7 chip0514_407625 PBMC +11685 CASSSLSGSGQPQHF TRBV28*01 TRBJ1-5*01 HLA-A*02:01 B2M MHCI YVLDHLIVV BRLF1 EBV PMID:34811538 tetramer-sort yes amplicon-seq effector memory T cells T1D T1D_7 chip0514_96293 PBMC +11686 CASRHELLSIGEQYF TRBV4-3*01 TRBJ2-7*01 HLA-A*02:01 B2M MHCI LLAGIGTVPI PGT HomoSapiens PMID:34811538 tetramer-sort yes amplicon-seq Naive T cells T1D T1D_7 chip0514_429359 PBMC +11687 CSASVGPLVGNTIYY TRBV20-1*01 TRBJ1-3*01 HLA-A*02:01 B2M MHCI LLAGIGTVPI PGT HomoSapiens PMID:34811538 tetramer-sort yes amplicon-seq Naive T cells T1D T1D_7 chip0514_225865 PBMC +11688 CILRFD??cGHLFYF TRAV26-2*01 TRAJ49*01 HLA-A*02:01 B2M MHCI LLAGIGTVPI PGT HomoSapiens PMID:34811538 tetramer-sort yes amplicon-seq Naive T cells T1D T1D_7 chip0514_40805 PBMC +11689 CALRVPQct?GNHRMLIS TRAV9-2*01 TRAJ38*01 CASRAEACLDTGELFF TRBV6-1*01 TRBJ2-2*01 HLA-A*02:01 B2M MHCI GLCTLVAML BLMF1 EBV PMID:34811538 tetramer-sort yes amplicon-seq effector memory T cells T1D T1D_7 chip0514_701530 PBMC +11690 CAESIPGGKLIF TRAV5*01 TRAJ23*01 CSVGSSGTNEKLFF TRBV29-1*01 TRBJ1-4*01 HLA-A*02:01 B2M MHCI GLCTLVAML BLMF1 EBV PMID:34811538 tetramer-sort yes amplicon-seq effector memory T cells T1D T1D_7 chip0514_248155 PBMC +11692 CASSGRRTGELFF TRBV19*01 TRBJ2-2*01 HLA-A*02:01 B2M MHCI GILGFVFTL M1 InfluenzaA PMID:34811538 tetramer-sort yes amplicon-seq transitional T cells between effector and memory populations T1D T1D_7 chip0514_516071 PBMC +11693 CVVPRGGGSYIPTF TRAV12-1*01 TRAJ6*01 CASSQEGGGGYEQYF TRBV4-2*01 TRBJ2-7*01 HLA-A*02:01 B2M MHCI YLQQNWWTL LMP1 EBV PMID:34811538 tetramer-sort yes amplicon-seq central memory T cells T1D T1D_7 chip0514_72962 PBMC +11694 CAVLMDSNYQLIW TRAV21*01 TRAJ33*01 CASSGDGMNTEAFF TRBV10-2*01 TRBJ1-1*01 HLA-A*02:01 B2M MHCI CLGGLLTMV LMP2A EBV PMID:34811538 tetramer-sort yes amplicon-seq transitional T cells between effector and memory populations T1D T1D_7 chip0514_525515 PBMC +11695 CASSYYLQAGKTNEKLFF TRBV6-5*01 TRBJ1-4*01 HLA-A*02:01 B2M MHCI FLQDVMNIL GAD65 HomoSapiens PMID:34811538 tetramer-sort yes amplicon-seq Naive T cells T1D T1D_7 chip0514_229047 PBMC +11696 CASSFRGGGGFYGYTF TRBV28*01 TRBJ1-2*01 HLA-A*02:01 B2M MHCI SLNYSGVKEL ZNT8 HomoSapiens PMID:34811538 tetramer-sort yes amplicon-seq Naive T cells T1D T1D_7 chip0514_651034 PBMC +11697 CASSFNVGTVPYEQYF TRBV27*01 TRBJ2-7*01 HLA-A*02:01 B2M MHCI YVLDHLIVV BRLF1 EBV PMID:34811538 tetramer-sort yes amplicon-seq effector memory T cells T1D T1D_7 chip0514_608225 PBMC +11698 CASSSFHIQGGYEQYF TRBV28*01 TRBJ2-7*01 HLA-A*02:01 B2M MHCI VLFGLGFAI IGRP HomoSapiens PMID:34811538 tetramer-sort yes amplicon-seq effector T cells T1D T1D_7 chip0514_585683 PBMC +11699 CASRALLGSNQPQHF TRBV19*01 TRBJ1-5*01 HLA-A*02:01 B2M MHCI YVLDHLIVV BRLF1 EBV PMID:34811538 tetramer-sort yes amplicon-seq effector memory T cells T1D T1D_8 chip0514_36322 PBMC +11700 CAISESMGNQPQHF TRBV10-3*01 TRBJ1-5*01 HLA-A*02:01 B2M MHCI VMNILLQYV GAD65 HomoSapiens PMID:34811538 tetramer-sort yes amplicon-seq Naive T cells T1D T1D_7 chip0514_68042 PBMC +11701 CAVSIGF TRAV12-2*01 TRAJ34*01 CASSLGQGVNGYTF TRBV5-6*01 TRBJ1-2*01 HLA-A*02:01 B2M MHCI ALAGIGILTV MART1 HomoSapiens PMID:34811538 tetramer-sort yes amplicon-seq central memory T cells T1D T1D_7 chip0514_229726 PBMC +11702 CGADGLPF TRAV12-3*01 TRAJ45*01 CASSWGPGELFF TRBV2*01 TRBJ2-2*01 HLA-A*02:01 B2M MHCI LLAGIGTVPI PGT HomoSapiens PMID:34811538 tetramer-sort yes amplicon-seq Naive T cells T1D T1D_7 chip0514_689792 PBMC +11703 CAVKNTDKLIF TRAV8-1*01 TRAJ34*01 CASSQDETGFLAGELFF TRBV14*01 TRBJ2-2*01 HLA-A*02:01 B2M MHCI YVLDHLIVV BRLF1 EBV PMID:34811538 tetramer-sort yes amplicon-seq effector memory T cells T1D T1D_7 chip0514_875326 PBMC +11704 CAMTLSNFGNEKLTF TRAV12-3*01 TRAJ48*01 CASSTPSGEDQETQYF TRBV28*01 TRBJ2-5*01 HLA-A*02:01 B2M MHCI LLAGIGTVPI PGT HomoSapiens PMID:34811538 tetramer-sort yes amplicon-seq Naive T cells T1D T1D_7 chip0514_344859 PBMC +11705 CGRNNDMRF TRAV12-2*01 TRAJ43*01 CASSFPQGADGYTF TRBV11-1*01 TRBJ1-2*01 HLA-A*02:01 B2M MHCI ELAGIGILTV MART1 HomoSapiens PMID:34811538 tetramer-sort yes amplicon-seq Naive T cells T1D T1D_8 chip0514_336972 PBMC +11706 CADDNNARLMF TRAV5*01 TRAJ31*01 HLA-A*02:01 B2M MHCI GLCTLVAML BLMF1 EBV PMID:34811538 tetramer-sort yes amplicon-seq effector T cells T1D T1D_7 chip0514_236285 PBMC +11707 CASSLEWPMNTEAFF TRBV5-1*01 TRBJ1-1*01 HLA-A*02:01 B2M MHCI LLFNILGGWV NS4B HCV PMID:34811538 tetramer-sort yes amplicon-seq Naive T cells T1D T1D_7 chip0514_877111 PBMC +11708 CAASAGAGSYQLTF TRAV29/DV5*01 TRAJ28*01 CASRSSAGGPLYTGELFF TRBV28*01 TRBJ2-2*01 HLA-A*02:01 B2M MHCI VIVMLTPLV PTPRN HomoSapiens PMID:34811538 tetramer-sort yes amplicon-seq Naive T cells T1D T1D_7 chip0514_787926 PBMC +11709 CAMRLSNFGNEKLTF TRAV12-3*01 TRAJ48*01 HLA-A*02:01 B2M MHCI LLAGIGTVPI PGT HomoSapiens PMID:34811538 tetramer-sort yes amplicon-seq Naive T cells T1D T1D_7 chip0514_231300 PBMC +11710 CASSQPSVLTDTQYF TRBV14*01 TRBJ2-3*01 HLA-A*02:01 B2M MHCI RGPGRAFVTI GP160 HIV-1 PMID:34811538 tetramer-sort yes amplicon-seq Naive T cells T1D T1D_7 chip0514_91644 PBMC +11711 CVVTLSNFGNEKLTF TRAV12-1*01 TRAJ48*01 CASSPPSgg??gaGPETQYF TRBV4-1*01 TRBJ2-5*01 HLA-A*02:01 B2M MHCI LLAGIGTVPI PGT HomoSapiens PMID:34811538 tetramer-sort yes amplicon-seq natural killer-like T cells T1D T1D_7 chip0514_97744 PBMC +11712 CASSQDPLAGDNTGELFF TRBV3-1*01 TRBJ2-2*01 HLA-A*02:01 B2M MHCI LLAGIGTVPI PGT HomoSapiens PMID:34811538 tetramer-sort yes amplicon-seq Naive T cells T1D T1D_7 chip0514_205030 PBMC +11713 CASSEKGGETQYF TRBV2*01 TRBJ2-5*01 HLA-A*02:01 B2M MHCI VAANIVLTV ZNT8 HomoSapiens PMID:34811538 tetramer-sort yes amplicon-seq Naive T cells T1D T1D_8 chip0514_616176 PBMC +11714 CAVKDTDKLIF TRAV8-3*01,TRAV8-1*01 TRAJ34*01 CASSPLLGSNQPQHF TRBV19*01 TRBJ1-5*01 HLA-A*02:01 B2M MHCI YVLDHLIVV BRLF1 EBV PMID:34811538 tetramer-sort yes amplicon-seq effector T cells T1D T1D_7 chip0514_880604 PBMC +11715 CAVRGGSQGNLIF TRAV12-2*01 TRAJ42*01 HLA-A*02:01 B2M MHCI YLQQNWWTL LMP1 EBV PMID:34811538 tetramer-sort yes amplicon-seq Naive T cells T1D T1D_7 chip0514_100452 PBMC +11716 CAVYSGYALNF TRAV8-1*01 TRAJ41*01 CASSPGTGGADTQYF TRBV6-2*01,TRBV6-3*01 TRBJ2-3*01 HLA-A*02:01 B2M MHCI YVLDHLIVV BRLF1 EBV PMID:34811538 tetramer-sort yes amplicon-seq effector T cells T1D T1D_7 chip0514_754986 PBMC +11717 CAMSLANFGNEKLTF TRAV12-3*01 TRAJ48*01 CASSGRDRSGNTIYF TRBV5-6*01 TRBJ1-3*01 HLA-A*02:01 B2M MHCI LLAGIGTVPI PGT HomoSapiens PMID:34811538 tetramer-sort yes amplicon-seq Naive T cells T1D T1D_7 chip0514_793001 PBMC +11719 CAMGRSNFGNEKLTF TRAV12-3*01 TRAJ48*01 CASSSTQRDHSTDTQYF TRBV13*01 TRBJ2-3*01 HLA-A*02:01 B2M MHCI LLAGIGTVPI PGT HomoSapiens PMID:34811538 tetramer-sort yes amplicon-seq Naive T cells T1D T1D_7 chip0514_399922 PBMC +11720 CAVKDTDKLIF TRAV8-1*01 TRAJ34*01 CSATDSTYNEQFF TRBV20-1*01 TRBJ2-1*01 HLA-A*02:01 B2M MHCI YVLDHLIVV BRLF1 EBV PMID:34811538 tetramer-sort yes amplicon-seq effector T cells T1D T1D_7 chip0514_17809 PBMC +11721 CAVRWHTGNQFYF TRAV41*01 TRAJ49*01 CSATDTRDSLQSNEKLFF TRBV20-1*01 TRBJ1-4*01 HLA-A*02:01 B2M MHCI LLAGIGTVPI PGT HomoSapiens PMID:34811538 tetramer-sort yes amplicon-seq Naive T cells T1D T1D_7 chip0514_721568 PBMC +11722 CAMSLSNFGHEKLTF TRAV12-3*01 TRAJ48*01 HLA-A*02:01 B2M MHCI LLAGIGTVPI PGT HomoSapiens PMID:34811538 tetramer-sort yes amplicon-seq Naive T cells T1D T1D_7 chip0514_249771 PBMC +11723 CSATGVGVDELGFDTEAFF TRBV20-1*01 TRBJ1-1*01 HLA-A*02:01 B2M MHCI LLAGIGTVPI PGT HomoSapiens PMID:34811538 tetramer-sort yes amplicon-seq Naive T cells T1D T1D_8 chip0514_60570 PBMC +11724 CAVKDTDKLIF TRAV8-1*01 TRAJ34*01 CATSEWTSGRGGDEQFF TRBV24-1*01 TRBJ2-1*01 HLA-A*02:01 B2M MHCI YVLDHLIVV BRLF1 EBV PMID:34811538 tetramer-sort yes amplicon-seq effector T cells T1D T1D_7 chip0514_33498 PBMC +11725 CAFNNAGNMLTF TRAV24*01 TRAJ39*01 CASSLVGELFF TRBV12-3*01,TRBV12-4*01 TRBJ2-2*01 HLA-A*02:01 B2M MHCI VAANIVLTV ZNT8 HomoSapiens PMID:34811538 tetramer-sort yes amplicon-seq Naive T cells T1D T1D_8 chip0514_521769 PBMC +11726 CASSWMINSYNEQFF TRBV28*01 TRBJ2-1*01 HLA-A*02:01 B2M MHCI FLWSVFWLI IGRP HomoSapiens PMID:34811538 tetramer-sort yes amplicon-seq Naive T cells T1D T1D_7 chip0514_345170 PBMC +11727 CASSSTTTGRLLGELFF TRBV28*01 TRBJ2-2*01 HLA-A*02:01 B2M MHCI LLAGIGTVPI PGT HomoSapiens PMID:34811538 tetramer-sort yes amplicon-seq Naive T cells T1D T1D_7 chip0514_752363 PBMC +11728 CASSDEGARTEAFF TRBV5-4*01 TRBJ1-1*01 HLA-A*02:01 B2M MHCI LLAGIGTVPI PGT HomoSapiens PMID:34811538 tetramer-sort yes amplicon-seq Naive T cells T1D T1D_7 chip0514_479100 PBMC +11729 CATQGNSGYSTLTF TRAV17*01 TRAJ11*01 HLA-A*02:01 B2M MHCI FLYALALLL LMP2 EBV PMID:34811538 tetramer-sort yes amplicon-seq central memory T cells T1D T1D_8 chip0514_618903 PBMC +11731 CAVPRDDKIIF TRAV20*01 TRAJ30*01 CSVGTGLSYEQYF TRBV29-1*01 TRBJ2-7*01 HLA-A*02:01 B2M MHCI IQATVMIIV ZNT8 HomoSapiens PMID:34811538 tetramer-sort yes amplicon-seq Naive T cells T1D T1D_7 chip0514_390916 PBMC +11732 CAMSRSNFGNEKLTF TRAV12-3*01 TRAJ48*01 CASSPTGEGQPQHF TRBV7-8*01 TRBJ1-5*01 HLA-A*02:01 B2M MHCI LLAGIGTVPI PGT HomoSapiens PMID:34811538 tetramer-sort yes amplicon-seq Naive T cells T1D T1D_7 chip0514_101795 PBMC +11733 CAVKGSGASWGKSPF TRAV12-2*01 TRAJ24*01 CASSLVAGDFNEQYC TRBV5-5*01 TRBJ2-7*01 HLA-A*02:01 B2M MHCI VVTGVLVYL ZNT8 HomoSapiens PMID:34811538 tetramer-sort yes amplicon-seq effector memory T cells T1D T1D_7 chip0514_195444 PBMC +11734 CATDGAALAGLAGNTDTQYF TRBV11-1*01 TRBJ2-3*01 HLA-A*02:01 B2M MHCI RGPGRAFVTI GP160 HIV-1 PMID:34811538 tetramer-sort yes amplicon-seq Naive T cells T1D T1D_7 chip0514_790964 PBMC +11735 CPPSEQGct??gcPSSNLPF TRAV19*01 TRAJ44*01 CARSTGGRGAAFF TRBV28*01 TRBJ1-1*01 HLA-A*02:01 B2M MHCI RLLYPDYQI ZNT8 HomoSapiens PMID:34811538 tetramer-sort yes amplicon-seq Naive T cells T1D T1D_7 chip0514_117740 PBMC +11736 CAVLLDSNYQLIW TRAV12-3*01 TRAJ33*01 CASSEDGMNTEAFF TRBV10-2*01 TRBJ1-1*01 HLA-A*02:01 B2M MHCI CLGGLLTMV LMP2A EBV PMID:34811538 tetramer-sort yes amplicon-seq effector memory T cells T1D T1D_7 chip0514_229082 PBMC +11737 CAVSSGYSTLTF TRAV8-1*01 TRAJ11*01 CASSSLSGSGQPQHF TRBV28*01 TRBJ1-5*01 HLA-A*02:01 B2M MHCI YVLDHLIVV BRLF1 EBV PMID:34811538 tetramer-sort yes amplicon-seq effector T cells T1D T1D_7 chip0514_769307 PBMC +11739 CASSLALGSYEQYF TRBV7-7*01 TRBJ2-7*01 HLA-A*02:01 B2M MHCI LVGPTPVNI POL HIV-1 PMID:34811538 tetramer-sort yes amplicon-seq Naive T cells T1D T1D_7 chip0514_391775 PBMC +11740 CASSESAGANTGELFF TRBV6-1*01 TRBJ2-2*01 HLA-A*02:01 B2M MHCI LLAGIGTVPI PGT HomoSapiens PMID:34811538 tetramer-sort yes amplicon-seq Naive T cells T1D T1D_7 chip0514_239045 PBMC +11741 CASSPSPLAGVGQETQYF TRBV7-3*01,TRBV11-3*01 TRBJ2-5*01 HLA-A*02:01 B2M MHCI LLAGIGTVPI PGT HomoSapiens PMID:34811538 tetramer-sort yes amplicon-seq Naive T cells T1D T1D_7 chip0514_613818 PBMC +11742 CAMSLSNFGNEKLTF TRAV12-3*01 TRAJ48*01 CASSSDTIYF TRBV12-3*01,TRBV12-4*01 TRBJ1-3*01 HLA-A*02:01 B2M MHCI LLAGIGTVPI PGT HomoSapiens PMID:34811538 tetramer-sort yes amplicon-seq Naive T cells T1D T1D_7 chip0514_270650 PBMC +11743 CAVLMDSNYQLIW TRAV21*01 TRAJ33*01 CASSPAGMNTEAFF TRBV10-2*01 TRBJ1-1*01 HLA-A*02:01 B2M MHCI CLGGLLTMV LMP2A EBV PMID:34811538 tetramer-sort yes amplicon-seq central memory T cells T1D T1D_7 chip0514_182680 PBMC +11744 CMVPRGGGSYIPTF TRAV12-1*01 TRAJ6*01 HLA-A*02:01 B2M MHCI YLQQNWWTL LMP1 EBV PMID:34811538 tetramer-sort yes amplicon-seq central memory T cells T1D T1D_7 chip0514_73880 PBMC +11745 CASSVWTGHNEQFL TRBV6-4*01 TRBJ2-1*01 HLA-A*02:01 B2M MHCI GLCTLVAML BLMF1 EBV PMID:34811538 tetramer-sort yes amplicon-seq effector T cells T1D T1D_7 chip0514_884595 PBMC +11746 CAATGNSGYSTLTF TRAV17*01 TRAJ11*01 CASSYQGGNEQFF TRBV6-5*01 TRBJ2-1*01 HLA-A*02:01 B2M MHCI FLYALALLL LMP2 EBV PMID:34811538 tetramer-sort yes amplicon-seq central memory T cells T1D T1D_8 chip0514_869588 PBMC +11747 CAVKRSLGGANNLFF TRAV8-1*01 TRAJ36*01 CASSFFSSYEQYF TRBV5-6*01 TRBJ2-7*01 HLA-A*02:01 B2M MHCI YVLDHLIVV BRLF1 EBV PMID:34811538 tetramer-sort yes amplicon-seq effector T cells T1D T1D_8 chip0514_800444 PBMC +11749 CASGGFSGSCALTL TRAV17*01 TRAJ11*01 HLA-A*02:01 B2M MHCI FLYALALLL LMP2 EBV PMID:34811538 tetramer-sort yes amplicon-seq effector memory T cells T1D T1D_8 chip0514_174821 PBMC +11750 CAMSISNFGNEKLTF TRAV12-3*01 TRAJ48*01 HLA-A*02:01 B2M MHCI LLAGIGTVPI PGT HomoSapiens PMID:34811538 tetramer-sort yes amplicon-seq Naive T cells T1D T1D_7 chip0514_170276 PBMC +11751 CAVRLLSSGGGADGLTF TRAV3*01 TRAJ45*01 CASGSRASTDTQYF TRBV12-3*01,TRBV12-4*01 TRBJ2-3*01 HLA-A*02:01 B2M MHCI VVTGVLVYL ZNT8 HomoSapiens PMID:34811538 tetramer-sort yes amplicon-seq Naive T cells T1D T1D_7 chip0514_771515 PBMC +11752 CATTNQAGTALIF TRAV38-1*01 TRAJ15*01 CASSLWGTEAFF TRBV28*01 TRBJ1-1*01 HLA-A*02:01 B2M MHCI KLQVFLIVL IAPP HomoSapiens PMID:34811538 tetramer-sort yes amplicon-seq Naive T cells T1D T1D_7 chip0514_472478 PBMC +11753 CAEKRTPAGTALIF TRAV13-2*01 TRAJ15*01 CASNGGSSYNEQFF TRBV19*01 TRBJ2-1*01 HLA-A*02:01 B2M MHCI YVLDHLIVV BRLF1 EBV PMID:34811538 tetramer-sort yes amplicon-seq effector memory T cells T1D T1D_7 chip0514_438621 PBMC +11754 CATSDFLSNEQFF TRBV24-1*01 TRBJ2-1*01 HLA-A*02:01 B2M MHCI YVLDHLIVV BRLF1 EBV PMID:34811538 tetramer-sort yes amplicon-seq effector memory T cells T1D T1D_7 chip0514_746243 PBMC +11755 CAYSGTYKYIF TRAV12-1*01 TRAJ40*01 CASSEGAEAFF TRBV10-2*01 TRBJ1-1*01 HLA-A*02:01 B2M MHCI ALAGIGILTV MART1 HomoSapiens PMID:34811538 tetramer-sort yes amplicon-seq Naive T cells T1D T1D_8 chip0514_248744 PBMC +11756 CAASAESRLMF TRAV29/DV5*01 TRAJ31*01 CASSLTGELFF TRBV12-3*01,TRBV12-4*01 TRBJ2-2*01 HLA-A*02:01 B2M MHCI RGPGRAFVTI GP160 HIV-1 PMID:34811538 tetramer-sort yes amplicon-seq Naive T cells T1D T1D_7 chip0514_671101 PBMC +11757 CAMWEEYGNKLVF TRAV12-3*01 TRAJ47*01 CASSQGGDTEAFF TRBV4-1*01 TRBJ1-1*01 HLA-A*02:01 B2M MHCI RQFGPDWIVA ADH HomoSapiens PMID:34811538 tetramer-sort yes amplicon-seq Naive T cells T1D T1D_7 chip0514_426347 PBMC +11758 CAVGDKIIF TRAV12-2*01 TRAJ30*01 CASTPAQITGELFF TRBV6-1*01 TRBJ2-2*01 HLA-A*02:01 B2M MHCI ALAGIGILTV MART1 HomoSapiens PMID:34811538 tetramer-sort yes amplicon-seq Naive T cells T1D T1D_8 chip0514_229186 PBMC +11759 CAMREGGNFNKFYF TRAV14/DV4*01 TRAJ21*01 CSAGEVLNQPQHF TRBV20-1*01 TRBJ1-5*01 HLA-A*02:01 B2M MHCI YVLDHLIVV BRLF1 EBV PMID:34811538 tetramer-sort yes amplicon-seq effector memory T cells T1D T1D_7 chip0514_806436 PBMC +11761 CSVGDGGTNEKLFF TRBV29-1*01 TRBJ1-4*01 HLA-A*02:01 B2M MHCI GLCTLVAML BLMF1 EBV PMID:34811538 tetramer-sort yes amplicon-seq effector T cells T1D T1D_7 chip0514_344071 PBMC +11762 CASENQVQETQYF TRBV28*01 TRBJ2-5*01 HLA-A*02:01 B2M MHCI FLGKIWPSYK GAG HIV-1 PMID:34811538 tetramer-sort yes amplicon-seq transitional T cells between effector and memory populations T1D T1D_7 chip0514_192599 PBMC +11763 CSARGSTFYEQYF TRBV20-1*01 TRBJ2-7*01 HLA-A*02:01 B2M MHCI YVLDHLIVV BRLF1 EBV PMID:34811538 tetramer-sort yes amplicon-seq effector T cells T1D T1D_7 chip0514_603854 PBMC +11764 RAIGLSNFGNEKLTF TRAV12-3*01 TRAJ48*01 HLA-A*02:01 B2M MHCI LLAGIGTVPI PGT HomoSapiens PMID:34811538 tetramer-sort yes amplicon-seq Naive T cells T1D T1D_7 chip0514_197670 PBMC +11765 CAMSRSNFGNEKLTF TRAV12-3*01 TRAJ48*01 CASSYEASGGLEETQYF TRBV6-5*01 TRBJ2-5*01 HLA-A*02:01 B2M MHCI LLAGIGTVPI PGT HomoSapiens PMID:34811538 tetramer-sort yes amplicon-seq Naive T cells T1D T1D_7 chip0514_636505 PBMC +11766 CAEDNNARLMF TRAV5*01,TRAV23/DV6*01 TRAJ31*01 CSARDGTGNGYTF TRBV20-1*01 TRBJ1-2*01 HLA-A*02:01 B2M MHCI GLCTLVAML BLMF1 EBV PMID:34811538 tetramer-sort yes amplicon-seq effector T cells T1D T1D_8 chip0514_362522 PBMC +11767 CAVRTEMYSGGGADGLTF TRAV41*01 TRAJ45*01 CATSDATYLSAGELFF TRBV24-1*01 TRBJ2-2*01 HLA-A*02:01 B2M MHCI ALGIGILTV MART1 HomoSapiens PMID:34811538 tetramer-sort yes amplicon-seq Naive T cells T1D T1D_7 chip0514_140038 PBMC +11768 CAVKPRGaa?RTARNLTF TRAV21*01 TRAJ44*01 CASAEVIYNEQLF TRBV12-3*01,TRBV12-4*01 TRBJ2-1*01 HLA-A*02:01 B2M MHCI ALAGIGILTV MART1 HomoSapiens PMID:34811538 tetramer-sort yes amplicon-seq Naive T cells T1D T1D_7 chip0514_388408 PBMC +11769 CAMKNTDKLIF TRAV8-1*01 TRAJ34*01 CASSSQGGTYGYTF TRBV6-5*01 TRBJ1-2*01 HLA-A*02:01 B2M MHCI YVLDHLIVV BRLF1 EBV PMID:34811538 tetramer-sort yes amplicon-seq effector memory T cells T1D T1D_7 chip0514_310025 PBMC +11770 CAEPH??cDTLIF TRAV13-2*01 TRAJ34*01 HLA-A*02:01 B2M MHCI LLFNILGGWV NS4B HCV PMID:34811538 tetramer-sort yes amplicon-seq Naive T cells T1D T1D_7 chip0514_291704 PBMC +11772 CSVGDGGTNEKLFF TRBV29-1*01 TRBJ1-4*01 HLA-A*02:01 B2M MHCI GLCTLVAML BLMF1 EBV PMID:34811538 tetramer-sort yes amplicon-seq effector T cells T1D T1D_7 chip0514_686017 PBMC +11773 CVVKGDDKIIF TRAV12-1*01 TRAJ30*01 CASSLLTGNQPQHF TRBV28*01 TRBJ1-5*01 HLA-A*02:01 B2M MHCI FLWSVFWLI IGRP HomoSapiens PMID:34811538 tetramer-sort yes amplicon-seq Naive T cells T1D T1D_7 chip0514_338922 PBMC +11774 CASSIGDTEAFF TRBV19*01 TRBJ1-1*01 HLA-A*02:01 B2M MHCI KLVALGINAV NS3 HCV PMID:34811538 tetramer-sort yes amplicon-seq Naive T cells T1D T1D_7 chip0514_431538 PBMC +11775 CAMSRSNFGNEKLTF TRAV12-3*01 TRAJ48*01 CASSPAAGMETQYF TRBV28*01 TRBJ2-5*01 HLA-A*02:01 B2M MHCI LLAGIGTVPI PGT HomoSapiens PMID:34811538 tetramer-sort yes amplicon-seq Naive T cells T1D T1D_8 chip0514_694441 PBMC +11777 CASSYSSGYEQYF TRBV6-5*01 TRBJ2-7*01 HLA-A*02:01 B2M MHCI GLCTLVAML BLMF1 EBV PMID:34811538 tetramer-sort yes amplicon-seq Naive T cells T1D T1D_8 chip0514_9125 PBMC +11778 CAMAISNFGNEKLTF TRAV12-3*01 TRAJ48*01 CASSLTGRDDEKLFF TRBV28*01 TRBJ1-4*01 HLA-A*02:01 B2M MHCI LLAGIGTVPI PGT HomoSapiens PMID:34811538 tetramer-sort yes amplicon-seq Naive T cells T1D T1D_7 chip0514_567823 PBMC +11779 CAVARgg??gcTVLPF TRAV36/DV7*01 TRAJ39*01 CASSNWDREGEQYF TRBV11-3*01 TRBJ2-7*01 HLA-A*02:01 B2M MHCI ALWMRLLPL PREINS HomoSapiens PMID:34811538 tetramer-sort yes amplicon-seq Naive T cells T1D T1D_7 chip0514_727944 PBMC +11780 CAMSASNFGNEKLTF TRAV12-3*01 TRAJ48*01 CASSLARQTLSYNEQFF TRBV5-6*01 TRBJ2-1*01 HLA-A*02:01 B2M MHCI LLAGIGTVPI PGT HomoSapiens PMID:34811538 tetramer-sort yes amplicon-seq Naive T cells T1D T1D_7 chip0514_719132 PBMC +11781 CAARGGg?tYHWVIF TRAV13-1*01 TRAJ13*01 CASSSLSGSGQPQHF TRBV28*01 TRBJ1-5*01 HLA-A*02:01 B2M MHCI YVLDHLIVV BRLF1 EBV PMID:34811538 tetramer-sort yes amplicon-seq effector memory T cells T1D T1D_7 chip0514_215774 PBMC +11782 CAVPGGFKTIF TRAV12-2*01 TRAJ9*01 CASSVGTGDQETQYF TRBV6-1*01 TRBJ2-5*01 HLA-A*02:01 B2M MHCI LLAGIGTVPI PGT HomoSapiens PMID:34811538 tetramer-sort yes amplicon-seq Naive T cells T1D T1D_7 chip0514_144132 PBMC +11783 CAMSASNFGNGILTF TRAV12-3*01 TRAJ48*01 CASSLDDWTDSKGANYGYTF TRBV11-3*01 TRBJ1-2*01 HLA-A*02:01 B2M MHCI LLAGIGTVPI PGT HomoSapiens PMID:34811538 tetramer-sort yes amplicon-seq Naive T cells T1D T1D_7 chip0514_93229 PBMC +11784 CASSGDGMNTEAFF TRBV10-2*01 TRBJ1-1*01 HLA-A*02:01 B2M MHCI CLGGLLTMV LMP2A EBV PMID:34811538 tetramer-sort yes amplicon-seq effector memory T cells T1D T1D_7 chip0514_840357 PBMC +11785 CAMVISNFGNEKLTF TRAV12-3*01 TRAJ48*01 CAGSDDREDTGELLF TRBV3-1*01 TRBJ2-2*01 HLA-A*02:01 B2M MHCI LLAGIGTVPI PGT HomoSapiens PMID:34811538 tetramer-sort yes amplicon-seq Naive T cells T1D T1D_7 chip0514_328253 PBMC +11786 CAVKDTDKLLF TRAV8-1*01 TRAJ34*01 CASSIYNEQFF TRBV27*01 TRBJ2-1*01 HLA-A*02:01 B2M MHCI YVLDHLIVV BRLF1 EBV PMID:34811538 tetramer-sort yes amplicon-seq effector memory T cells T1D T1D_7 chip0514_560704 PBMC +11787 CVVSAENQGGKLIF TRAV10*01 TRAJ23*01 CASSVWTGHNEQFF TRBV6-4*01 TRBJ2-1*01 HLA-A*02:01 B2M MHCI GLCTLVAML BLMF1 EBV PMID:34811538 tetramer-sort yes amplicon-seq effector T cells T1D T1D_7 chip0514_556287 PBMC +11788 CAGGGDGGSQGNLLF TRAV21*01 TRAJ42*01 CAVSGRAGETQYF TRBV19*01 TRBJ2-5*01 HLA-A*02:01 B2M MHCI GILGFVFTL M1 InfluenzaA PMID:34811538 tetramer-sort yes amplicon-seq transitional T cells between effector and memory populations T1D T1D_8 chip0514_656045 PBMC +11789 CASTQQGSNYGYTF TRBV6-2*01,TRBV6-3*01 TRBJ1-2*01 HLA-A*02:01 B2M MHCI YVLDHLIVV BRLF1 EBV PMID:34811538 tetramer-sort yes amplicon-seq effector memory T cells T1D T1D_7 chip0514_653622 PBMC +11790 CVVADNYGQNFVF TRAV12-1*01 TRAJ26*01 HLA-A*02:01 B2M MHCI LLAGIGTVPI PGT HomoSapiens PMID:34811538 tetramer-sort yes amplicon-seq Naive T cells T1D T1D_7 chip0514_64341 PBMC +11791 CASSLEGTEAFF TRAV38-1*01 TRAJ40*01 CASSLEGTEAFF TRBV7-9*01 TRBJ1-1*01 HLA-A*02:01 B2M MHCI HLCGSHLVEA PPI HomoSapiens PMID:34811538 tetramer-sort yes amplicon-seq Naive T cells T1D T1D_7 chip0514_709299 PBMC +11792 CAERAGga?WWGKLQF TRAV13-2*01 TRAJ24*01 HLA-A*02:01 B2M MHCI LLAGIGTVPI PGT HomoSapiens PMID:34811538 tetramer-sort yes amplicon-seq Naive T cells T1D T1D_8 chip0514_566008 PBMC +11793 CASSEVSAGRAFF TRAV14/DV4*01 TRAJ40*01 CASSEVSAGRAFF TRBV2*01 TRBJ1-1*01 HLA-A*02:01 B2M MHCI ALAGIGILTV MART1 HomoSapiens PMID:34811538 tetramer-sort yes amplicon-seq Naive T cells T1D T1D_8 chip0514_463370 PBMC +11794 CAMSRAPac?GRAS*LIF TRAV12-3*01 TRAJ3*01 CASSPPGLAPGELFF TRBV2*01 TRBJ2-2*01 HLA-A*02:01 B2M MHCI GLCTLVAML BLMF1 EBV PMID:34811538 tetramer-sort yes amplicon-seq effector memory T cells T1D T1D_8 chip0514_486182 PBMC +11796 CAMCLSNFGNEKLTF TRAV12-3*01 TRAJ48*01 CSAREGSQGAKTGELFF TRBV20-1*01 TRBJ2-2*01 HLA-A*02:01 B2M MHCI LLAGIGTVPI PGT HomoSapiens PMID:34811538 tetramer-sort yes amplicon-seq Naive T cells T1D T1D_7 chip0514_149387 PBMC +11797 CASSIYNEQFF TRBV27*01 TRBJ2-1*01 HLA-A*02:01 B2M MHCI YVLDHLIVV BRLF1 EBV PMID:34811538 tetramer-sort yes amplicon-seq effector T cells T1D T1D_7 chip0514_202437 PBMC +11799 CASRAEAYLNTGELFF TRBV6-1*01 TRBJ2-2*01 HLA-A*02:01 B2M MHCI GLCTLVAML BLMF1 EBV PMID:34811538 tetramer-sort yes amplicon-seq effector memory T cells T1D T1D_7 chip0514_747738 PBMC +11800 CASSDIWQGANYGYTF TRBV2*01 TRBJ1-2*01 HLA-A*02:01 B2M MHCI ALAGIGILTV MART1 HomoSapiens PMID:34811538 tetramer-sort yes amplicon-seq Naive T cells T1D T1D_7 chip0514_713467 PBMC +11801 CSATDSTYNEQFF TRBV20-1*01 TRBJ2-1*01 HLA-A*02:01 B2M MHCI YVLDHLIVV BRLF1 EBV PMID:34811538 tetramer-sort yes amplicon-seq effector memory T cells T1D T1D_7 chip0514_543135 PBMC +11802 CASKGNEKLTF TRAV38-1*01 TRAJ48*01 CASSVGDSNSPLHF TRBV9*01 TRBJ1-6*01 HLA-A*02:01 B2M MHCI GIIYIIYKL P3A CoxsackievirusB PMID:34811538 tetramer-sort yes amplicon-seq Naive T cells T1D T1D_8 chip0514_59655 PBMC +11803 CSARNLRAQGGDIQYF TRBV20-1*01 TRBJ2-4*01 HLA-A*02:01 B2M MHCI LLAGIGTVPI PGT HomoSapiens PMID:34811538 tetramer-sort yes amplicon-seq Naive T cells T1D T1D_7 chip0514_351203 PBMC +11804 CVVTPMDSNYQLIW TRAV8-2*01 TRAJ33*01 HLA-A*02:01 B2M MHCI LLPPLLEHL PTPRN HomoSapiens PMID:34811538 tetramer-sort yes amplicon-seq Naive T cells T1D T1D_7 chip0514_220996 PBMC +11805 CAVKDTDKLIF TRAV8-1*01 TRAJ34*01 CASSQVVGAYGYTF TRBV3-1*01 TRBJ1-2*01 HLA-A*02:01 B2M MHCI YVLDHLIVV BRLF1 EBV PMID:34811538 tetramer-sort yes amplicon-seq effector T cells T1D T1D_8 chip0514_854933 PBMC +11806 CAASIIGYSTLTF TRAV13-1*01 TRAJ11*01 CASRDGRETQYF TRBV2*01 TRBJ2-5*01 HLA-A*02:01 B2M MHCI CINGVCWTV NS3 HCV PMID:34811538 tetramer-sort yes amplicon-seq Naive T cells T1D T1D_7 chip0514_480847 PBMC +11807 CAMSGANFGNEKLTF TRAV12-3*01 TRAJ48*01 CSASTDLRASPKPDTQYF TRBV20-1*01 TRBJ2-3*01 HLA-A*02:01 B2M MHCI LLAGIGTVPI PGT HomoSapiens PMID:34811538 tetramer-sort yes amplicon-seq Naive T cells T1D T1D_7 chip0514_732486 PBMC +11808 CAVVg?aEFCL TRAV12-2*01 TRAJ26*01 CASSLAQGQPQHF TRBV7-9*01 TRBJ1-5*01 HLA-A*02:01 B2M MHCI ALAGIGILTV MART1 HomoSapiens PMID:34811538 tetramer-sort yes amplicon-seq Naive T cells T1D T1D_8 chip0514_491493 PBMC +11809 CASLLSNFGNEKLTF TRAV12-3*01 TRAJ48*01 CASRPPGGVTDTQYF TRBV27*01 TRBJ2-3*01 HLA-A*02:01 B2M MHCI LLAGIGTVPI PGT HomoSapiens PMID:34811538 tetramer-sort yes amplicon-seq Naive T cells T1D T1D_7 chip0514_594957 PBMC +11810 CAMLISNFGHESFSF TRAV12-3*01 TRAJ48*01 HLA-A*02:01 B2M MHCI LLAGIGTVPI PGT HomoSapiens PMID:34811538 tetramer-sort yes amplicon-seq Naive T cells T1D T1D_7 chip0514_676361 PBMC +11811 CAMREGGSYQKVTF TRAV14/DV4*01 TRAJ13*01 CASSLVGKNTEAFF TRBV13*01 TRBJ1-1*01 HLA-A*02:01 B2M MHCI KIADPICTFI ZNT8 HomoSapiens PMID:34811538 tetramer-sort yes amplicon-seq Naive T cells T1D T1D_7 chip0514_190448 PBMC +11812 CAVSSGYSTLTF TRAV8-1*01 TRAJ11*01 CASSSLSGSGQPQHF TRBV28*01 TRBJ1-5*01 HLA-A*02:01 B2M MHCI YVLDHLIVV BRLF1 EBV PMID:34811538 tetramer-sort yes amplicon-seq effector T cells T1D T1D_7 chip0514_618883 PBMC +11813 CVVTLSNFGNEKLTF TRAV12-1*01 TRAJ48*01 HLA-A*02:01 B2M MHCI LLAGIGTVPI PGT HomoSapiens PMID:34811538 tetramer-sort yes amplicon-seq Naive T cells T1D T1D_7 chip0514_570704 PBMC +11816 CPVFDTDKLIF TRAV8-1*01 TRAJ34*01 CASSQVVGAYGYTF TRBV3-1*01 TRBJ1-2*01 HLA-A*02:01 B2M MHCI YVLDHLIVV BRLF1 EBV PMID:34811538 tetramer-sort yes amplicon-seq effector memory T cells T1D T1D_8 chip0514_750307 PBMC +11817 CSTTGDYTEAFF TRBV29-1*01 TRBJ1-1*01 HLA-A*02:01 B2M MHCI GIIYIIYKL P3A CoxsackievirusB PMID:34811538 tetramer-sort yes amplicon-seq Naive T cells T1D T1D_8 chip0514_232446 PBMC +11818 CAISISNFGNEKLTF TRAV12-3*01 TRAJ48*01 HLA-A*02:01 B2M MHCI LLAGIGTVPI PGT HomoSapiens PMID:34811538 tetramer-sort yes amplicon-seq Naive T cells T1D T1D_7 chip0514_78099 PBMC +11819 CATAGASGYSTLTF TRAV17*01 TRAJ11*01 HLA-A*02:01 B2M MHCI FLYALALLL LMP2 EBV PMID:34811538 tetramer-sort yes amplicon-seq effector memory T cells T1D T1D_8 chip0514_515693 PBMC +11820 CVGTRSGGSYIPTF TRAV12-1*01 TRAJ6*01 CASSIFQGSNQPQHF TRBV19*01 TRBJ1-5*01 HLA-A*02:01 B2M MHCI GILGFVFTL M1 InfluenzaA PMID:34811538 tetramer-sort yes amplicon-seq transitional T cells between effector and memory populations T1D T1D_7 chip0514_625404 PBMC +11821 CAMSRSNFGHEKLTF TRAV12-3*01 TRAJ48*01 CASSSRDSGTNYGYTF TRBV6-2*01,TRBV6-3*01 TRBJ1-2*01 HLA-A*02:01 B2M MHCI LLAGIGTVPI PGT HomoSapiens PMID:34811538 tetramer-sort yes amplicon-seq Naive T cells T1D T1D_7 chip0514_618018 PBMC +11822 CASSFTPANTGELFF TRBV27*01 TRBJ2-2*01 HLA-A*02:01 B2M MHCI ALAGIGILTV MART1 HomoSapiens PMID:34811538 tetramer-sort yes amplicon-seq Naive T cells T1D T1D_7 chip0514_621367 PBMC +11823 CDVKDTGRLVF TRAV8-1*01 TRAJ34*01 CASSQVVGAYGYTF TRBV3-1*01 TRBJ1-2*01 HLA-A*02:01 B2M MHCI YVLDHLIVV BRLF1 EBV PMID:34811538 tetramer-sort yes amplicon-seq effector T cells T1D T1D_8 chip0514_600339 PBMC +11824 CAMREGPLLENAGNMLTL TRAV14/DV4*01 TRAJ39*01 HLA-A*02:01 B2M MHCI LLAGIGTVPI PGT HomoSapiens PMID:34811538 tetramer-sort yes amplicon-seq Naive T cells T1D T1D_7 chip0514_580142 PBMC +11825 CILIRYEKLVF TRAV26-2*01 TRAJ57*01 CASSQDYRDQETQYF TRBV14*01 TRBJ2-5*01 HLA-A*02:01 B2M MHCI QLARQQVHV GFAP HomoSapiens PMID:34811538 tetramer-sort yes amplicon-seq Naive T cells T1D T1D_7 chip0514_804566 PBMC +11826 CAATSTGNQFYF TRAV41*01 TRAJ49*01 CASSQLTGTGSEQYF TRBV4-2*01 TRBJ2-7*01 HLA-A*02:01 B2M MHCI VLFGLGFAI IGRP HomoSapiens PMID:34811538 tetramer-sort yes amplicon-seq Naive T cells T1D T1D_7 chip0514_267264 PBMC +11827 CASSSLSGSGQPQHF TRBV28*01 TRBJ1-5*01 HLA-A*02:01 B2M MHCI YVLDHLIVV BRLF1 EBV PMID:34811538 tetramer-sort yes amplicon-seq effector memory T cells T1D T1D_7 chip0514_394219 PBMC +11828 CVGTRSGGSYIPTF TRAV12-1*01 TRAJ6*01 CASSQDSSEQYF TRBV4-2*01 TRBJ2-7*01 HLA-A*02:01 B2M MHCI YLQQNWWTL LMP1 EBV PMID:34811538 tetramer-sort yes amplicon-seq effector memory T cells T1D T1D_8 chip0514_174725 PBMC +11829 CARDSGTSGTDTQYF TRBV2*01 TRBJ2-3*01 HLA-A*02:01 B2M MHCI AIIRILQQL VPR HIV-1 PMID:34811538 tetramer-sort yes amplicon-seq Naive T cells T1D T1D_7 chip0514_722444 PBMC +11830 CAVYGGATNKLIF TRAV12-2*01 TRAJ32*01 CASSLAGGGGEQFF TRBV5-1*01 TRBJ2-1*01 HLA-A*02:01 B2M MHCI IQATVMIIV ZNT8 HomoSapiens PMID:34811538 tetramer-sort yes amplicon-seq Naive T cells T1D T1D_7 chip0514_364327 PBMC +11831 CAVIIAVFGNEKLTF TRAV12-3*01 TRAJ48*01 CATTMGQPTNTGELFF TRBV5-1*01 TRBJ2-2*01 HLA-A*02:01 B2M MHCI LLAGIGTVPI PGT HomoSapiens PMID:34811538 tetramer-sort yes amplicon-seq Naive T cells T1D T1D_7 chip0514_641569 PBMC +11832 CAMRGSPct?YNTDKLIF TRAV14/DV4*01 TRAJ34*01 CASSEVDQYEQYF TRBV6-1*01 TRBJ2-7*01 HLA-A*02:01 B2M MHCI YVLDHLIVV BRLF1 EBV PMID:34811538 tetramer-sort yes amplicon-seq effector memory T cells T1D T1D_7 chip0514_418720 PBMC +11833 CASSLPGTSGTGELFF TRBV12-3*01,TRBV12-4*01 TRBJ2-2*01 HLA-A*02:01 B2M MHCI ALAGIGILTV MART1 HomoSapiens PMID:34811538 tetramer-sort yes amplicon-seq Naive T cells T1D T1D_7 chip0514_90265 PBMC +11834 CAMSRSNFGNEKLTF TRAV12-3*01 TRAJ48*01 CAISGVGTEAFF TRBV10-3*01 TRBJ1-1*01 HLA-A*02:01 B2M MHCI LLAGIGTVPI PGT HomoSapiens PMID:34811538 tetramer-sort yes amplicon-seq Naive T cells T1D T1D_7 chip0514_196601 PBMC +11836 CAVLLDSNYQLIW TRAV21*01,TRAV12-3*01 TRAJ33*01 CASSEDGMNTEAFF TRBV10-2*01 TRBJ1-1*01 HLA-A*02:01 B2M MHCI CLGGLLTMV LMP2A EBV PMID:34811538 tetramer-sort yes amplicon-seq effector memory T cells T1D T1D_7 chip0514_436581 PBMC +11837 CATKPGGGNTEAFF TRBV19*01 TRBJ1-1*01 HLA-A*02:01 B2M MHCI GILGFVFTL M1 InfluenzaA PMID:34811538 tetramer-sort yes amplicon-seq transitional T cells between effector and memory populations T1D T1D_7 chip0514_689514 PBMC +11838 CALKDTDKLIF TRAV16*01 TRAJ34*01 CATSDWLTNEQFF TRBV24-1*01 TRBJ2-1*01 HLA-A*02:01 B2M MHCI YVLDHLIVV BRLF1 EBV PMID:34811538 tetramer-sort yes amplicon-seq effector memory T cells T1D T1D_8 chip0514_305599 PBMC +11839 CSARGAIHPTYEQYF TRBV20-1*01 TRBJ2-7*01 HLA-A*02:01 B2M MHCI FMYSDFHFI PA InfluenzaA PMID:34811538 tetramer-sort yes amplicon-seq central memory T cells T1D T1D_7 chip0514_877774 PBMC +11840 CVVNKWPGQAGTALIF TRAV12-1*01 TRAJ15*01 HLA-A*02:01 B2M MHCI LLSLFSLWL ZNT8 HomoSapiens PMID:34811538 tetramer-sort yes amplicon-seq Naive T cells T1D T1D_8 chip0514_444170 PBMC +11841 CASNPSPLSTSGTGELFF TRBV5-5*01 TRBJ2-2*01 HLA-A*02:01 B2M MHCI LLAGIGTVPI PGT HomoSapiens PMID:34811538 tetramer-sort yes amplicon-seq Naive T cells T1D T1D_7 chip0514_272068 PBMC +11842 CAPPLPNt?tGNQTLTV TRAV12-3*01 TRAJ48*01 CASSLAGLVEETQYF TRBV7-2*01 TRBJ2-5*01 HLA-A*02:01 B2M MHCI LLAGIGTVPI PGT HomoSapiens PMID:34811538 tetramer-sort yes amplicon-seq Naive T cells T1D T1D_7 chip0514_819239 PBMC +11844 CAMTLSYFGTARLTF TRAV12-3*01 TRAJ48*01 CSVDPNSQETQYF TRBV29-1*01 TRBJ2-5*01 HLA-A*02:01 B2M MHCI LLAGIGTVPI PGT HomoSapiens PMID:34811538 tetramer-sort yes amplicon-seq Naive T cells T1D T1D_8 chip0514_330922 PBMC +11845 CAPPYSTNTGILLF TRAV9-2*01 TRAJ37*01 CASSPYEGDTEAFF TRBV19*01 TRBJ1-1*01 HLA-A*02:01 B2M MHCI LALWGPDPAA INS HomoSapiens PMID:34811538 tetramer-sort yes amplicon-seq Naive T cells T1D T1D_7 chip0514_242129 PBMC +11846 CAMSISNFGNEKLTF TRAV12-3*01 TRAJ48*01 CASSSEGAGTVYEQYF TRBV5-1*01 TRBJ2-7*01 HLA-A*02:01 B2M MHCI LLAGIGTVPI PGT HomoSapiens PMID:34811538 tetramer-sort yes amplicon-seq Naive T cells T1D T1D_8 chip0514_564064 PBMC +11847 CAEETSGSRLTF TRAV13-2*01 TRAJ10*01 CASSLGQPQFF TRBV11-3*01 TRBJ2-1*01 HLA-A*02:01 B2M MHCI LLAGIGTVPI PGT HomoSapiens PMID:34811538 tetramer-sort yes amplicon-seq Naive T cells T1D T1D_8 chip0514_346729 PBMC +11848 CASSSQGGNYGYTF TRBV6-5*01 TRBJ1-2*01 HLA-A*02:01 B2M MHCI FLYALALLL LMP2 EBV PMID:34811538 tetramer-sort yes amplicon-seq effector memory T cells T1D T1D_7 chip0514_439591 PBMC +11849 CAVRDNQGGKLIF TRAV12-2*01 TRAJ23*01 CASSYSGEHTGELFF TRBV6-5*01 TRBJ2-2*01 HLA-A*02:01 B2M MHCI YLLPGWKL VP3 RotavirusA PMID:34811538 tetramer-sort yes amplicon-seq Naive T cells T1D T1D_7 chip0514_367795 PBMC +11850 CDSSLFSNEQFF TRBV28*01 TRBJ2-1*01 HLA-A*02:01 B2M MHCI YVLDHLIVV BRLF1 EBV PMID:34811538 tetramer-sort yes amplicon-seq effector memory T cells T1D T1D_7 chip0514_589029 PBMC +11851 CAALGSASGSALTF TRAV36/DV7*01 TRAJ41*01 CASS*TPSgg??taGTAHEQYF TRBV6-5*01 TRBJ2-7*01 HLA-A*02:01 B2M MHCI SLYNTVATLY GAG HIV-1 PMID:34811538 tetramer-sort yes amplicon-seq Naive T cells T1D T1D_7 chip0514_90030 PBMC +11852 CAVSVPSSGSARHLTF TRAV3*01 TRAJ22*01 CASSPGGASEQFF TRBV12-3*01,TRBV12-4*01 TRBJ2-1*01 HLA-A*02:01 B2M MHCI WGPDPAAA PREINS HomoSapiens PMID:34811538 tetramer-sort yes amplicon-seq Naive T cells tet_neg chip0514_97943 PBMC +11853 CAFMEINYQLIW TRAV38-1*01 TRAJ33*01 CASGTSGRTRDTQYF TRBV6-1*01 TRBJ2-3*01 HLA-A*02:01 B2M MHCI RGPGRAFVTI GP160 HIV-1 PMID:34811538 tetramer-sort yes amplicon-seq Naive T cells T1D T1D_8 chip0514_675777 PBMC +11854 CAVGHESGGGADGLTL TRAV12-2*01 TRAJ45*01 CASNYGEGGGYGYTF TRBV6-1*01 TRBJ1-2*01 HLA-A*02:01 B2M MHCI LLAGIGTVPI PGT HomoSapiens PMID:34811538 tetramer-sort yes amplicon-seq Naive T cells T1D T1D_7 chip0514_784930 PBMC +11855 CAYRSQNSGYALNF TRAV38-2/DV8*01 TRAJ41*01 CSVDPGGYGYTF TRBV29-1*01 TRBJ1-2*01 HLA-A*02:01 B2M MHCI KLQVFLIVL IAPP HomoSapiens PMID:34811538 tetramer-sort yes amplicon-seq Naive T cells T1D T1D_7 chip0514_767330 PBMC +11856 CAPGSGNTGKLIF TRAV20*01 TRAJ37*01 CASSQEGAYTGELFS TRBV4-2*01 TRBJ2-2*01 HLA-A*02:01 B2M MHCI FLWSVFWLI IGRP HomoSapiens PMID:34811538 tetramer-sort yes amplicon-seq Naive T cells T1D T1D_8 chip0514_770727 PBMC +11857 CAVNPRGCRGYFIF TRAV12-2*01 TRAJ42*01 CASSKGALQGTGELFF TRBV6-1*01 TRBJ2-2*01 HLA-A*02:01 B2M MHCI LLAGIGTVPI PGT HomoSapiens PMID:34811538 tetramer-sort yes amplicon-seq Naive T cells T1D T1D_7 chip0514_675103 PBMC +11858 CASSISGGYEQYF TRBV19*01 TRBJ2-7*01 HLA-A*02:01 B2M MHCI VMNILLQYVV GAD65 HomoSapiens PMID:34811538 tetramer-sort yes amplicon-seq Naive T cells T1D T1D_7 chip0514_127967 PBMC +11859 CASSPQLREQYF TRBV7-9*01 TRBJ2-7*01 HLA-A*02:01 B2M MHCI KMYAFTLES ZNT8 HomoSapiens PMID:34811538 tetramer-sort yes amplicon-seq Naive T cells T1D T1D_8 chip0514_842388 PBMC +11860 CAYNTGTASKLTF TRAV38-1*01 TRAJ44*01 HLA-A*02:01 B2M MHCI GILGFVFTL M1 InfluenzaA PMID:34811538 tetramer-sort yes amplicon-seq Naive T cells T1D T1D_7 chip0514_234671 PBMC +11861 CASSPGGSTEAFF TRBV28*01 TRBJ1-1*01 HLA-A*02:01 B2M MHCI AIIRILQQL VPR HIV-1 PMID:34811538 tetramer-sort yes amplicon-seq Naive T cells T1D T1D_7 chip0514_12555 PBMC +11862 CAMSISNFGLECLSF TRAV12-3*01 TRAJ48*01 CASSPEGPANYGYTF TRBV4-1*01 TRBJ1-2*01 HLA-A*02:01 B2M MHCI LLAGIGTVPI PGT HomoSapiens PMID:34811538 tetramer-sort yes amplicon-seq Naive T cells T1D T1D_8 chip0514_673925 PBMC +11864 CAMRGDAGGTSYGKLTF TRAV14/DV4*01 TRAJ52*01 CASSFYSNQPQHF TRBV19*01 TRBJ1-5*01 HLA-A*02:01 B2M MHCI GILGFVFTL M1 InfluenzaA PMID:34811538 tetramer-sort yes amplicon-seq transitional T cells between effector and memory populations T1D T1D_8 chip0514_734903 PBMC +11865 GIARVSgc?QGGTLIF TRAV26-1*01 TRAJ23*01 CSGWTSANEKLFF TRBV29-1*01 TRBJ1-4*01 HLA-A*02:01 B2M MHCI RGPGRAFVTI GP160 HIV-1 PMID:34811538 tetramer-sort yes amplicon-seq Naive T cells T1D T1D_8 chip0514_194135 PBMC +11866 CASSSLSGSGQPQHF TRBV28*01 TRBJ1-5*01 HLA-A*02:01 B2M MHCI YVLDHLIVV BRLF1 EBV PMID:34811538 tetramer-sort yes amplicon-seq effector T cells T1D T1D_7 chip0514_270212 PBMC +11867 CSARDGTGNGYTF TRBV20-1*01 TRBJ1-2*01 HLA-A*02:01 B2M MHCI GLCTLVAML BLMF1 EBV PMID:34811538 tetramer-sort yes amplicon-seq effector memory T cells T1D T1D_8 chip0514_104064 PBMC +11868 CASTFWGTEGTEAFF TRBV6-1*01 TRBJ1-1*01 HLA-A*02:01 B2M MHCI LLAGIGTVPI PGT HomoSapiens PMID:34811538 tetramer-sort yes amplicon-seq Naive T cells T1D T1D_7 chip0514_866036 PBMC +11869 CAAPYGNKLVF TRAV38-1*01 TRAJ47*01 HLA-A*02:01 B2M MHCI GIIYIIYKL P3A CoxsackievirusB PMID:34811538 tetramer-sort yes amplicon-seq Naive T cells T1D T1D_7 chip0514_342911 PBMC +11870 CAASEDA??gNNNDMRF TRAV29/DV5*01 TRAJ43*01 CASSLFGANTEAFF TRBV11-3*01 TRBJ1-1*01 HLA-A*02:01 B2M MHCI YLQQNWWTL LMP1 EBV PMID:34811538 tetramer-sort yes amplicon-seq Naive T cells T1D T1D_7 chip0514_873591 PBMC +11871 AAVNGSANN*K*IF TRAV12-2*01 TRAJ12*01 CASSDGQPATIYF TRBV13*01 TRBJ1-3*01 HLA-A*02:01 B2M MHCI YLLPGWKL VP3 RotavirusA PMID:34811538 tetramer-sort yes amplicon-seq Naive T cells T1D T1D_7 chip0514_199392 PBMC +11872 CASSYGSRETQYF TRBV7-6*01 TRBJ2-5*01 HLA-A*02:01 B2M MHCI YLLEMLWRL LMP1 EBV PMID:34811538 tetramer-sort yes amplicon-seq Naive T cells T1D T1D_7 chip0514_678460 PBMC +11873 CASSPQGAGEAFF TRBV28*01 TRBJ1-1*01 HLA-A*02:01 B2M MHCI CINGVCWTV NS3 HCV PMID:34811538 tetramer-sort yes amplicon-seq Naive T cells T1D T1D_7 chip0514_195216 PBMC +11874 CAFMNLNAGGTSYGKLTF TRAV38-1*01 TRAJ52*01 CASSVRDGTGELFF TRBV9*01 TRBJ2-2*01 HLA-A*02:01 B2M MHCI VIYQYMDDL POL HIV-1 PMID:34811538 tetramer-sort yes amplicon-seq Naive T cells T1D T1D_8 chip0514_462117 PBMC +11875 CAMSGDDKIIF TRAV12-3*01 TRAJ30*01 HLA-A*02:01 B2M MHCI LAVDGVLSV ZNT8 HomoSapiens PMID:34811538 tetramer-sort yes amplicon-seq Naive T cells T1D T1D_7 chip0514_308317 PBMC +11876 CSARDRTGNGYTF TRBV20-1*01 TRBJ1-2*01 HLA-A*02:01 B2M MHCI GLCTLVAML BLMF1 EBV PMID:34811538 tetramer-sort yes amplicon-seq effector memory T cells T1D T1D_8 chip0514_145714 PBMC +11877 CASSYPPDPYEQYF TRBV6-2*01,TRBV6-3*01 TRBJ2-7*01 HLA-A*02:01 B2M MHCI AAGIGILTV MART1 HomoSapiens PMID:34811538 tetramer-sort yes amplicon-seq Naive T cells T1D T1D_8 chip0514_320094 PBMC +11878 CASSLDHtg?QETNEQFF TRBV11-2*01 TRBJ2-1*01 HLA-A*02:01 B2M MHCI ALAGIGILTV MART1 HomoSapiens PMID:34811538 tetramer-sort yes amplicon-seq Naive T cells T1D T1D_7 chip0514_320808 PBMC +11879 CAVSSGYSTLTF TRAV8-1*01 TRAJ11*01 CASSSLSGSGQPQHF TRBV28*01 TRBJ1-5*01 HLA-A*02:01 B2M MHCI YVLDHLIVV BRLF1 EBV PMID:34811538 tetramer-sort yes amplicon-seq effector memory T cells T1D T1D_7 chip0514_261884 PBMC +11880 CASSIRSSYEQYF TRBV19*01 TRBJ2-7*01 HLA-A*02:01 B2M MHCI GILGFVFTL M1 InfluenzaA PMID:34811538 tetramer-sort yes amplicon-seq transitional T cells between effector and memory populations T1D T1D_7 chip0514_250005 PBMC +11881 CAMSQLNSGNTPLVF TRAV14/DV4*01 TRAJ29*01 CASSSSGSTGELFF TRBV6-5*01 TRBJ2-2*01 HLA-A*02:01 B2M MHCI KLVALGINAV NS3 HCV PMID:34811538 tetramer-sort yes amplicon-seq Naive T cells T1D T1D_7 chip0514_587667 PBMC +11882 CAMSISNFGNEKLTF TRAV12-3*01 TRAJ48*01 CASSTGQGIPYEQYF TRBV12-3*01,TRBV12-4*01 TRBJ2-7*01 HLA-A*02:01 B2M MHCI LLAGIGTVPI PGT HomoSapiens PMID:34811538 tetramer-sort yes amplicon-seq Naive T cells T1D T1D_7 chip0514_284007 PBMC +11884 CVVTLSNFGNEKLTF TRAV12-1*01 TRAJ48*01 CASSLQIRGTGELFF TRBV5-6*01 TRBJ2-2*01 HLA-A*02:01 B2M MHCI LLAGIGTVPI PGT HomoSapiens PMID:34811538 tetramer-sort yes amplicon-seq Naive T cells T1D T1D_7 chip0514_754334 PBMC +11885 CAMGISNFGNEKLTF TRAV12-3*01 TRAJ48*01 CAWSGRQLSGNTIYF TRBV30*01 TRBJ1-3*01 HLA-A*02:01 B2M MHCI LLAGIGTVPI PGT HomoSapiens PMID:34811538 tetramer-sort yes amplicon-seq Naive T cells T1D T1D_7 chip0514_8810 PBMC +11886 CAVNMGRESQGNLIF TRAV12-2*01 TRAJ42*01 HLA-A*02:01 B2M MHCI GILGFVFTL M1 InfluenzaA PMID:34811538 tetramer-sort yes amplicon-seq transitional T cells between effector and memory populations T1D T1D_8 chip0514_380142 PBMC +11887 CAVKDTDKLIF TRAV8-1*01 TRAJ34*01 CASSFNVGTVPYEQYF TRBV27*01 TRBJ2-7*01 HLA-A*02:01 B2M MHCI YVLDHLIVV BRLF1 EBV PMID:34811538 tetramer-sort yes amplicon-seq effector T cells T1D T1D_7 chip0514_740042 PBMC +11888 CAVKVQGAQKLVS TRAV12-2*01 TRAJ54*01 HLA-A*02:01 B2M MHCI LLIDLTSFL ZNT8 HomoSapiens PMID:34811538 tetramer-sort yes amplicon-seq Naive T cells T1D T1D_8 chip0514_588452 PBMC +11889 CASSLSSGQPQHF TRBV27*01 TRBJ1-5*01 HLA-A*02:01 B2M MHCI FMYSDFHFI PA InfluenzaA PMID:34811538 tetramer-sort yes amplicon-seq transitional T cells between effector and memory populations T1D T1D_7 chip0514_286452 PBMC +11890 CAVKNRAGTALIF TRAV12-2*01 TRAJ15*01 HLA-A*02:01 B2M MHCI LLAGIGTVPI PGT HomoSapiens PMID:34811538 tetramer-sort yes amplicon-seq Naive T cells T1D T1D_7 chip0514_67294 PBMC +11891 CASSGDTTSAYNEQFF TRBV27*01 TRBJ2-1*01 HLA-A*02:01 B2M MHCI YVLDHLIVV BRLF1 EBV PMID:34811538 tetramer-sort yes amplicon-seq effector T cells T1D T1D_8 chip0514_101000 PBMC +11892 CAPPGGAIQYF TRBV28*01 TRBJ2-4*01 HLA-A*02:01 B2M MHCI YVLDHLIVV BRLF1 EBV PMID:34811538 tetramer-sort yes amplicon-seq effector memory T cells T1D T1D_7 chip0514_259879 PBMC +11893 CAVSSGYSTLTF TRAV8-1*01 TRAJ11*01 CASSSLSGSGQPQHF TRBV28*01 TRBJ1-5*01 HLA-A*02:01 B2M MHCI YVLDHLIVV BRLF1 EBV PMID:34811538 tetramer-sort yes amplicon-seq effector T cells T1D T1D_7 chip0514_285479 PBMC +11894 CAVRPGTGGFLTIF TRAV21*01 TRAJ9*01 HLA-A*02:01 B2M MHCI LLAGIGTVPI PGT HomoSapiens PMID:34811538 tetramer-sort yes amplicon-seq Naive T cells T1D T1D_7 chip0514_775563 PBMC +11895 CAVKDTDKLIF TRAV8-1*01 TRAJ34*01 CSATDSTYNEQFF TRBV20-1*01 TRBJ2-1*01 HLA-A*02:01 B2M MHCI YVLDHLIVV BRLF1 EBV PMID:34811538 tetramer-sort yes amplicon-seq effector memory T cells T1D T1D_7 chip0514_269896 PBMC +11897 CSTQEGGYGYTF TRBV29-1*01 TRBJ1-2*01 HLA-A*02:01 B2M MHCI GLCTLVAML BLMF1 EBV PMID:34811538 tetramer-sort yes amplicon-seq effector memory T cells T1D T1D_7 chip0514_817820 PBMC +11898 CASSSFHIQGGYEQYF TRBV28*01 TRBJ2-7*01 HLA-A*02:01 B2M MHCI VLFGLGFAI IGRP HomoSapiens PMID:34811538 tetramer-sort yes amplicon-seq effector T cells T1D T1D_7 chip0514_2012 PBMC +11899 CASSEDGMNTEAFF TRBV10-2*01 TRBJ1-1*01 HLA-A*02:01 B2M MHCI CLGGLLTMV LMP2A EBV PMID:34811538 tetramer-sort yes amplicon-seq effector memory T cells T1D T1D_7 chip0514_83873 PBMC +11900 CAMSGSNFGNEKLTF TRAV12-3*01 TRAJ48*01 CASSQASSGDVSYEQYF TRBV3-1*01 TRBJ2-7*01 HLA-A*02:01 B2M MHCI LLAGIGTVPI PGT HomoSapiens PMID:34811538 tetramer-sort yes amplicon-seq Naive T cells T1D T1D_7 chip0514_806576 PBMC +11901 CAERSGDSGKLIF TRAV5*01 TRAJ37*01 CSVGTGGTNEKLFF TRBV29-1*01 TRBJ1-4*01 HLA-A*02:01 B2M MHCI GLCTLVAML BLMF1 EBV PMID:34811538 tetramer-sort yes amplicon-seq effector T cells T1D T1D_8 chip0514_579201 PBMC +11902 CVVPRGGGSYIPTF TRAV12-1*01 TRAJ6*01 CASNQEGGGGYEQYF TRBV4-2*01 TRBJ2-7*01 HLA-A*02:01 B2M MHCI YLQQNWWTL LMP1 EBV PMID:34811538 tetramer-sort yes amplicon-seq central memory T cells T1D T1D_7 chip0514_126847 PBMC +11903 CAVRLGN??cSGSSLTF TRAV41*01 TRAJ10*01 CASSQDDLISGNTTYF TRBV4-3*01 TRBJ1-3*01 HLA-A*02:01 B2M MHCI AIIRILQQL VPR HIV-1 PMID:34811538 tetramer-sort yes amplicon-seq Naive T cells T1D T1D_7 chip0514_364763 PBMC +11904 CASSLSWDLSGTYNEQFF TRBV28*01 TRBJ2-1*01 HLA-A*02:01 B2M MHCI YLLPRRGPRL POL HCV PMID:34811538 tetramer-sort yes amplicon-seq Naive T cells T1D T1D_7 chip0514_765128 PBMC +11905 CASSGGQGDEKLFF TRBV9*01 TRBJ1-4*01 HLA-A*02:01 B2M MHCI FLWSVFWLI IGRP HomoSapiens PMID:34811538 tetramer-sort yes amplicon-seq Naive T cells T1D T1D_7 chip0514_70719 PBMC +11906 CASSNHREAFF TRBV10-1*01 TRBJ1-1*01 HLA-A*02:01 B2M MHCI GIIYIIYKL P3A CoxsackievirusB PMID:34811538 tetramer-sort yes amplicon-seq Naive T cells T1D T1D_8 chip0514_274304 PBMC +11907 CAVKDTDKLIF TRAV8-1*01 TRAJ34*01 CASSYSEGLLTGELFF TRBV6-2*01,TRBV6-3*01 TRBJ2-2*01 HLA-A*02:01 B2M MHCI YVLDHLIVV BRLF1 EBV PMID:34811538 tetramer-sort yes amplicon-seq effector T cells T1D T1D_8 chip0514_239786 PBMC +11908 CASSLTGNSPLHF TRBV27*01 TRBJ1-6*01 HLA-A*02:01 B2M MHCI YVLDHLIVV BRLF1 EBV PMID:34811538 tetramer-sort yes amplicon-seq effector memory T cells T1D T1D_7 chip0514_466236 PBMC +11909 FAPGGGg?tYQKVTF TRAV13-1*01 TRAJ13*01 CASSSLSGSGQPQHF TRBV28*01 TRBJ1-5*01 HLA-A*02:01 B2M MHCI YVLDHLIVV BRLF1 EBV PMID:34811538 tetramer-sort yes amplicon-seq effector memory T cells T1D T1D_7 chip0514_28662 PBMC +11910 CAASGIASGTYKSIF TRAV29/DV5*01 TRAJ40*01 CATSDLIGELFF TRBV24-1*01 TRBJ2-2*01 HLA-A*02:01 B2M MHCI PLTFGWCYKL NEF InfluenzaA PMID:34811538 tetramer-sort yes amplicon-seq Naive T cells T1D T1D_7 chip0514_791582 PBMC +11911 CAAYGQTGANNLFF TRAV12-2*01 TRAJ36*01 CASSRFTYEQYF TRBV14*01 TRBJ2-7*01 HLA-A*02:01 B2M MHCI NLFLFLFAV IGRP HomoSapiens PMID:34811538 tetramer-sort yes amplicon-seq Naive T cells T1D T1D_8 chip0514_422914 PBMC +11912 CAAANYGQNFVF TRAV27*01 TRAJ26*01 HLA-A*02:01 B2M MHCI YVLDHLIVV BRLF1 EBV PMID:34811538 tetramer-sort yes amplicon-seq effector T cells T1D T1D_8 chip0514_838782 PBMC +11913 CAVKNTDKLIH TRAV8-1*01 TRAJ34*01 CASSSLGTSGGAILGELFF TRBV6-2*01,TRBV6-3*01 TRBJ2-2*01 HLA-A*02:01 B2M MHCI YVLDHLIVV BRLF1 EBV PMID:34811538 tetramer-sort yes amplicon-seq transitional T cells between effector and memory populations T1D T1D_7 chip0514_577678 PBMC +11914 CATVGSSGYSTLTF TRAV17*01 TRAJ11*01 CASTAQGGNIQYF TRBV6-1*01 TRBJ2-4*01 HLA-A*02:01 B2M MHCI FLYALALLL LMP2 EBV PMID:34811538 tetramer-sort yes amplicon-seq effector memory T cells T1D T1D_7 chip0514_738701 PBMC +11915 CASSSLSGSGQPQHF TRBV28*01 TRBJ1-5*01 HLA-A*02:01 B2M MHCI YVLDHLIVV BRLF1 EBV PMID:34811538 tetramer-sort yes amplicon-seq effector T cells T1D T1D_7 chip0514_276116 PBMC +11916 CAICAGQGEEKLFF TRBV10-3*01 TRBJ1-4*01 HLA-A*02:01 B2M MHCI FLWSVFWLI IGRP HomoSapiens PMID:34811538 tetramer-sort yes amplicon-seq Naive T cells T1D T1D_8 chip0514_99044 PBMC +11917 CPMSRSNFGNEKFTF TRAV12-3*01 TRAJ48*01 CASSPKDEGMNTEAFF TRBV3-1*01 TRBJ1-1*01 HLA-A*02:01 B2M MHCI LLAGIGTVPI PGT HomoSapiens PMID:34811538 tetramer-sort yes amplicon-seq Naive T cells T1D T1D_7 chip0514_227352 PBMC +11918 CAMSFSNFGNEKLTF TRAV12-3*01 TRAJ48*01 CASSQGATSGVQETQYF TRBV14*01 TRBJ2-5*01 HLA-A*02:01 B2M MHCI LLAGIGTVPI PGT HomoSapiens PMID:34811538 tetramer-sort yes amplicon-seq Naive T cells T1D T1D_7 chip0514_807170 PBMC +11919 CASSLDSDYGNTIYF TRBV7-6*01 TRBJ1-3*01 HLA-A*02:01 B2M MHCI RGPGRAFVTI GP160 HIV-1 PMID:34811538 tetramer-sort yes amplicon-seq Naive T cells T1D T1D_8 chip0514_262993 PBMC +11920 CAATGTASKLTF TRAV8-6*01 TRAJ44*01 CASSLNEQFF TRBV7-9*01 TRBJ2-1*01 HLA-A*02:01 B2M MHCI LLAGIGTVPI PGT HomoSapiens PMID:34811538 tetramer-sort yes amplicon-seq Naive T cells T1D T1D_7 chip0514_714161 PBMC +11921 CAVKDTDKLIF TRAV8-1*01 TRAJ34*01 CATSGWQGSEETQYF TRBV24-1*01 TRBJ2-5*01 HLA-A*02:01 B2M MHCI YVLDHLIVV BRLF1 EBV PMID:34811538 tetramer-sort yes amplicon-seq effector memory T cells T1D T1D_7 chip0514_116206 PBMC +11922 CVGTRSGGSYIPTF TRAV12-1*01 TRAJ6*01 HLA-A*02:01 B2M MHCI YLQQNWWTL LMP1 EBV PMID:34811538 tetramer-sort yes amplicon-seq central memory T cells T1D T1D_8 chip0514_344264 PBMC +11923 CAVNGYGTGGFKRLS TRAV12-2*01 TRAJ9*01 HLA-A*02:01 B2M MHCI YLLPRRGPRL POL HCV PMID:34811538 tetramer-sort yes amplicon-seq Naive T cells T1D T1D_7 chip0514_461321 PBMC +11924 CAPAGSSGYSTLTF TRAV17*01 TRAJ11*01 CASSYQGSGSYGYTF TRBV6-5*01 TRBJ1-2*01 HLA-A*02:01 B2M MHCI FLYALALLL LMP2 EBV PMID:34811538 tetramer-sort yes amplicon-seq effector memory T cells T1D T1D_7 chip0514_451717 PBMC +11925 CASSENGMNTEAFF TRBV10-2*01 TRBJ1-1*01 HLA-A*02:01 B2M MHCI CLGGLLTMV LMP2A EBV PMID:34811538 tetramer-sort yes amplicon-seq effector memory T cells T1D T1D_7 chip0514_705791 PBMC +11926 CSARDPTRADGYNEQFF TRBV20-1*01 TRBJ2-1*01 HLA-A*02:01 B2M MHCI FLWSVFWLI IGRP HomoSapiens PMID:34811538 tetramer-sort yes amplicon-seq Naive T cells T1D T1D_7 chip0514_184990 PBMC +11927 CGTDPLDYKLSF TRAV30*01 TRAJ20*01 HLA-A*02:01 B2M MHCI GIIYIIYKL P3A CoxsackievirusB PMID:34811538 tetramer-sort yes amplicon-seq Naive T cells T1D T1D_7 chip0514_91054 PBMC +11928 CAMREVFGLIKAAGNKLTF TRAV14/DV4*01 TRAJ17*01 CASSQTEISYEQYF TRBV12-3*01,TRBV12-4*01 TRBJ2-7*01 HLA-A*02:01 B2M MHCI ALGIGILTV MART1 HomoSapiens PMID:34811538 tetramer-sort yes amplicon-seq Naive T cells T1D T1D_7 chip0514_543074 PBMC +11930 CAGNYGGSQGNLIF TRAV25*01 TRAJ42*01 CASSIRSTGELFF TRBV19*01 TRBJ2-2*01 HLA-A*02:01 B2M MHCI GILGFVFTL M1 InfluenzaA PMID:34811538 tetramer-sort yes amplicon-seq transitional T cells between effector and memory populations T1D T1D_7 chip0514_437576 PBMC +11931 CAAQPYDNYGQNFVS TRAV20*01 TRAJ26*01 CASSLAQSYEQFF TRBV7-9*01 TRBJ2-1*01 HLA-A*02:01 B2M MHCI RGPGRAFVTI GP160 HIV-1 PMID:34811538 tetramer-sort yes amplicon-seq Naive T cells T1D T1D_7 chip0514_178748 PBMC +11932 CAVKDTDKLIF TRAV8-1*01 TRAJ34*01 HLA-A*02:01 B2M MHCI YVLDHLIVV BRLF1 EBV PMID:34811538 tetramer-sort yes amplicon-seq effector T cells T1D T1D_8 chip0514_643165 PBMC +11933 CAYRSGWNNNDMRF TRAV38-2/DV8*01 TRAJ43*01 CASSLQGKETQYF TRBV28*01 TRBJ2-5*01 HLA-A*02:01 B2M MHCI LLFNILGGWV NS4B HCV PMID:34811538 tetramer-sort yes amplicon-seq Naive T cells T1D T1D_7 chip0514_99988 PBMC +11934 CAVRSGYSTLTF TRAV8-1*01 TRAJ11*01 CASSSLSGSGRPQHF TRBV28*01 TRBJ1-5*01 HLA-A*02:01 B2M MHCI YVLDHLIVV BRLF1 EBV PMID:34811538 tetramer-sort yes amplicon-seq effector memory T cells T1D T1D_7 chip0514_13543 PBMC +11935 CASSPRQGERYNEQFF TRBV7-9*01 TRBJ2-1*01 HLA-A*02:01 B2M MHCI HLCGSHLVEA PPI HomoSapiens PMID:34811538 tetramer-sort yes amplicon-seq Naive T cells T1D T1D_7 chip0514_81684 PBMC +11936 CALKNTHNHIY TRAV8-1*01 TRAJ34*01 CASGELINEQFF TRBV3-1*01 TRBJ2-1*01 HLA-A*02:01 B2M MHCI YVLDHLIVV BRLF1 EBV PMID:34811538 tetramer-sort yes amplicon-seq effector T cells T1D T1D_8 chip0514_464666 PBMC +11937 CATEGGEGYSTLTF TRAV17*01 TRAJ11*01 CASSSQGGGDGYTF TRBV6-5*01 TRBJ1-2*01 HLA-A*02:01 B2M MHCI FLYALALLL LMP2 EBV PMID:34811538 tetramer-sort yes amplicon-seq central memory T cells T1D T1D_7 chip0514_554602 PBMC +11938 CAMTLSNFGNEKLTF TRAV12-3*01 TRAJ48*01 CSSCGGSGYTPGANVLTV TRBV19*01 TRBJ2-6*01 HLA-A*02:01 B2M MHCI LLAGIGTVPI PGT HomoSapiens PMID:34811538 tetramer-sort yes amplicon-seq Naive T cells T1D T1D_7 chip0514_780645 PBMC +11939 CASSPRTVNEQFF TRBV11-3*01 TRBJ2-1*01 HLA-A*02:01 B2M MHCI RGPGRAFVTI GP160 HIV-1 PMID:34811538 tetramer-sort yes amplicon-seq effector memory T cells T1D T1D_7 chip0514_10317 PBMC +11941 CARREDGLNTEAFF TRBV10-2*01 TRBJ1-1*01 HLA-A*02:01 B2M MHCI CLGGLLTMV LMP2A EBV PMID:34811538 tetramer-sort yes amplicon-seq effector memory T cells T1D T1D_7 chip0514_85661 PBMC +11942 CASCLVSEAFF TRBV7-9*01 TRBJ1-1*01 HLA-A*02:01 B2M MHCI LLSILCIWV ZNT8 HomoSapiens PMID:34811538 tetramer-sort yes amplicon-seq Naive T cells T1D T1D_7 chip0514_161442 PBMC +11943 CASSSTATNEKLFF TRAV38-1*01 TRAJ5*01 CASSSTATNEKLFF TRBV7-9*01 TRBJ1-4*01 HLA-A*02:01 B2M MHCI CINGVCWTV NS3 HCV PMID:34811538 tetramer-sort yes amplicon-seq Naive T cells T1D T1D_7 chip0514_700334 PBMC +11944 CILISIYNQGGKLIF TRAV26-2*01 TRAJ23*01 CSARDWGSSGANVLTF TRBV20-1*01 TRBJ2-6*01 HLA-A*02:01 B2M MHCI ALAGIGILTV MART1 HomoSapiens PMID:34811538 tetramer-sort yes amplicon-seq Naive T cells T1D T1D_7 chip0514_852139 PBMC +11946 CASTNQGRGDTEAFF TRBV19*01 TRBJ1-1*01 HLA-A*02:01 B2M MHCI ALWMRLLPL PREINS HomoSapiens PMID:34811538 tetramer-sort yes amplicon-seq Naive T cells T1D T1D_7 chip0514_265825 PBMC +11947 CAMAKSNFGNEKLTF TRAV12-3*01 TRAJ48*01 CSASGVDYNEQFF TRBV20-1*01 TRBJ2-1*01 HLA-A*02:01 B2M MHCI LLAGIGTVPI PGT HomoSapiens PMID:34811538 tetramer-sort yes amplicon-seq Naive T cells T1D T1D_7 chip0514_684954 PBMC +11948 CASSRQGDGMDGYTF TRBV6-1*01 TRBJ1-2*01 HLA-A*02:01 B2M MHCI FLYALALLL LMP2 EBV PMID:34811538 tetramer-sort yes amplicon-seq effector memory T cells T1D T1D_7 chip0514_113562 PBMC +11949 CAMKEVNLGNEKLTF TRAV14/DV4*01 TRAJ48*01 HLA-A*02:01 B2M MHCI LLAGIGTVPI PGT HomoSapiens PMID:34811538 tetramer-sort yes amplicon-seq Naive T cells T1D T1D_8 chip0514_437848 PBMC +11950 RAVTPNARLMF TRAV3*01 TRAJ31*01 CASSLSVSEFYNEQFF TRBV27*01 TRBJ2-1*01 HLA-A*02:01 B2M MHCI YVLDHLIVV BRLF1 EBV PMID:34811538 tetramer-sort yes amplicon-seq effector memory T cells T1D T1D_7 chip0514_681552 PBMC +11953 CAVPNTGANSKLTF TRAV21*01 TRAJ56*01 CASSLADSYEQYF TRBV11-1*01 TRBJ2-7*01 HLA-A*02:01 B2M MHCI LVGPTPVNI POL HIV-1 PMID:34811538 tetramer-sort yes amplicon-seq Naive T cells T1D T1D_7 chip0514_295303 PBMC +11954 CASDGQKLLF TRAV12-2*01 TRAJ16*01 HLA-A*02:01 B2M MHCI LLAGIGTVPI PGT HomoSapiens PMID:34811538 tetramer-sort yes amplicon-seq Naive T cells T1D T1D_7 chip0514_335297 PBMC +11955 CAVSDPSSTASKLTF TRAV8-4*01 TRAJ44*01 HLA-A*02:01 B2M MHCI ILSAHVATA ZNT8 HomoSapiens PMID:34811538 tetramer-sort yes amplicon-seq Naive T cells T1D T1D_8 chip0514_586123 PBMC +11956 CAPDSGYSTLTF TRAV17*01 TRAJ11*01 CASSHRGIDTQYF TRBV28*01 TRBJ2-3*01 HLA-A*02:01 B2M MHCI LLSLFSLWL ZNT8 HomoSapiens PMID:34811538 tetramer-sort yes amplicon-seq Naive T cells T1D T1D_8 chip0514_203776 PBMC +11957 CASSIWTNGGRDTQYF TRBV27*01 TRBJ2-3*01 HLA-A*02:01 B2M MHCI ALAGIGILTV MART1 HomoSapiens PMID:34811538 tetramer-sort yes amplicon-seq Naive T cells T1D T1D_7 chip0514_11781 PBMC +11958 CAVTKGGGNKLTF TRAV12-2*01 TRAJ10*01 CSVGGGLAGTFYNEQFF TRBV29-1*01 TRBJ2-1*01 HLA-A*02:01 B2M MHCI LLAGIGTVPI PGT HomoSapiens PMID:34811538 tetramer-sort yes amplicon-seq Naive T cells T1D T1D_7 chip0514_499201 PBMC +11959 CAPSISNFGNEKLTF TRAV12-3*01 TRAJ48*01 HLA-A*02:01 B2M MHCI LLAGIGTVPI PGT HomoSapiens PMID:34811538 tetramer-sort yes amplicon-seq Naive T cells T1D T1D_7 chip0514_478707 PBMC +11960 CAMSSLYNFNKFYF TRAV14/DV4*01 TRAJ21*01 CASSQDTPTARPYEQYF TRBV14*01 TRBJ2-7*01 HLA-A*02:01 B2M MHCI VMNILLQYV GAD65 HomoSapiens PMID:34811538 tetramer-sort yes amplicon-seq Naive T cells T1D T1D_8 chip0514_205188 PBMC +11961 CALAPIGta??agCGRNFVF TRAV19*01 TRAJ26*01 HLA-A*02:01 B2M MHCI KMYAFTLES ZNT8 HomoSapiens PMID:34811538 tetramer-sort yes amplicon-seq Naive T cells T1D T1D_7 chip0514_450173 PBMC +11962 CASSSLSGSGQPQHF TRBV28*01 TRBJ1-5*01 HLA-A*02:01 B2M MHCI YVLDHLIVV BRLF1 EBV PMID:34811538 tetramer-sort yes amplicon-seq effector memory T cells T1D T1D_7 chip0514_812397 PBMC +11963 CASTATGVTYNEQFF TRBV6-1*01 TRBJ2-1*01 HLA-A*02:01 B2M MHCI ALAGIGILTV MART1 HomoSapiens PMID:34811538 tetramer-sort yes amplicon-seq Naive T cells T1D T1D_7 chip0514_499263 PBMC +11964 CALSNTGKLIF TRAV8-1*01 TRAJ37*01 CASSQGGSGSSDTQYF TRBV4-2*01 TRBJ2-3*01 HLA-A*02:01 B2M MHCI YVLDHLIVV BRLF1 EBV PMID:34811538 tetramer-sort yes amplicon-seq effector memory T cells T1D T1D_7 chip0514_750739 PBMC +11965 RSASSGTSGSEQYF TRBV20-1*01 TRBJ2-7*01 HLA-A*02:01 B2M MHCI FLFAVGFYL IGRP HomoSapiens PMID:34811538 tetramer-sort yes amplicon-seq Naive T cells T1D T1D_8 chip0514_749689 PBMC +11966 CAGAGGPGNLIF TRAV27*01 TRAJ42*01 CASSIRSSYEQYF TRBV19*01 TRBJ2-7*01 HLA-A*02:01 B2M MHCI GILGFVFTL M1 InfluenzaA PMID:34811538 tetramer-sort yes amplicon-seq transitional T cells between effector and memory populations T1D T1D_8 chip0514_19992 PBMC +11967 CALGDDKIIF TRAV16*01 TRAJ30*01 CASSPRAGLAVNEQFF TRBV7-9*01 TRBJ2-1*01 HLA-A*02:01 B2M MHCI HLCGSHLVEA PPI HomoSapiens PMID:34811538 tetramer-sort yes amplicon-seq Naive T cells T1D T1D_7 chip0514_667240 PBMC +11968 CASSRPPLEVETQYF TRBV6-1*01 TRBJ2-5*01 HLA-A*02:01 B2M MHCI LLAGIGTVPI PGT HomoSapiens PMID:34811538 tetramer-sort yes amplicon-seq Naive T cells T1D T1D_7 chip0514_241787 PBMC +11969 CAVEGSYIPTF TRAV12-2*01 TRAJ6*01 CASSGAGSPYTF TRBV6-2*01,TRBV6-3*01 TRBJ1-2*01 HLA-A*02:01 B2M MHCI LLSLFSLWL ZNT8 HomoSapiens PMID:34811538 tetramer-sort yes amplicon-seq Naive T cells T1D T1D_8 chip0514_30473 PBMC +11970 CAMRDEDYKLSF TRAV14/DV4*01 TRAJ20*01 CASSESGRGQSETQYF TRBV10-1*01 TRBJ2-5*01 HLA-A*02:01 B2M MHCI RGPGRAFVTI GP160 HIV-1 PMID:34811538 tetramer-sort yes amplicon-seq effector T cells T1D T1D_7 chip0514_697661 PBMC +11971 CAESSGASGKLIF TRAV5*01 TRAJ37*01 CSVGTGGTNEKLFF TRBV29-1*01 TRBJ1-4*01 HLA-A*02:01 B2M MHCI GLCTLVAML BLMF1 EBV PMID:34811538 tetramer-sort yes amplicon-seq effector T cells T1D T1D_8 chip0514_93947 PBMC +11972 CAMSLSNFGNEKLTF TRAV12-3*01 TRAJ48*01 HLA-A*02:01 B2M MHCI LLAGIGTVPI PGT HomoSapiens PMID:34811538 tetramer-sort yes amplicon-seq Naive T cells T1D T1D_7 chip0514_260168 PBMC +11973 CASSSFHIQGGYEQYF TRBV28*01 TRBJ2-7*01 HLA-A*02:01 B2M MHCI VLFGLGFAI IGRP HomoSapiens PMID:34811538 tetramer-sort yes amplicon-seq effector T cells T1D T1D_7 chip0514_822736 PBMC +11974 CATTGGSGYSTLTF TRAV17*01 TRAJ11*01 CASSYRLGGNTQYF TRBV5-6*01 TRBJ2-3*01 HLA-A*02:01 B2M MHCI LLAGIGTVPI PGT HomoSapiens PMID:34811538 tetramer-sort yes amplicon-seq Naive T cells T1D T1D_7 chip0514_785716 PBMC +11978 CAVEDQGHNFNKFYF TRAV2*01 TRAJ21*01 CASSSQFGGKETQYF TRBV7-8*01 TRBJ2-5*01 HLA-A*02:01 B2M MHCI RLLPLLALL PREINS HomoSapiens PMID:34811538 tetramer-sort yes amplicon-seq effector memory T cells T1D T1D_7 chip0514_225320 PBMC +11979 CASSQFKDta??gcGNTDTQYF TRBV4-3*01 TRBJ2-3*01 HLA-A*02:01 B2M MHCI FLGKIWPSYK GAG HIV-1 PMID:34811538 tetramer-sort yes amplicon-seq Naive T cells T1D T1D_7 chip0514_251871 PBMC +11980 CAVLLDSNYQLIW TRAV21*01 TRAJ33*01 CASSEDGMNTEAFF TRBV10-2*01 TRBJ1-1*01 HLA-A*02:01 B2M MHCI CLGGLLTMV LMP2A EBV PMID:34811538 tetramer-sort yes amplicon-seq effector memory T cells T1D T1D_7 chip0514_775467 PBMC +11981 CASSLGLDTNQQETQYF TRBV5-6*01 TRBJ2-5*01 HLA-A*02:01 B2M MHCI LLAGIGTVPI PGT HomoSapiens PMID:34811538 tetramer-sort yes amplicon-seq Naive T cells T1D T1D_7 chip0514_352864 PBMC +11982 CAVKDTDKLIF TRAV8-1*01 TRAJ34*01 CSATDSTYNEQFF TRBV20-1*01 TRBJ2-1*01 HLA-A*02:01 B2M MHCI YVLDHLIVV BRLF1 EBV PMID:34811538 tetramer-sort yes amplicon-seq effector memory T cells T1D T1D_7 chip0514_361394 PBMC +11983 CAVKDTDKLIF TRAV8-1*01 TRAJ34*01 HLA-A*02:01 B2M MHCI YVLDHLIVV BRLF1 EBV PMID:34811538 tetramer-sort yes amplicon-seq effector memory T cells T1D T1D_7 chip0514_238788 PBMC +11984 CAMGGSERLVF TRAV12-3*01 TRAJ57*01 CASSGRDRGLPEAFF TRBV3-1*01 TRBJ1-1*01 HLA-A*02:01 B2M MHCI LLAGIGTVPI PGT HomoSapiens PMID:34811538 tetramer-sort yes amplicon-seq Naive T cells T1D T1D_7 chip0514_133274 PBMC +11985 CASSLAGGSYNEQFF TRAV38-1*01 TRAJ50*01 CASSLAGGSYNEQFF TRBV7-9*01 TRBJ2-1*01 HLA-A*02:01 B2M MHCI GIIYIIYKL P3A CoxsackievirusB PMID:34811538 tetramer-sort yes amplicon-seq natural killer-like T cells T1D T1D_7 chip0514_852485 PBMC +11986 CVVIYTDKLIF TRAV12-1*01 TRAJ34*01 CASSGLAGGPADTQYF TRBV2*01 TRBJ2-3*01 HLA-A*02:01 B2M MHCI RLLPLLALL PREINS HomoSapiens PMID:34811538 tetramer-sort yes amplicon-seq Naive T cells T1D T1D_7 chip0514_58518 PBMC +11987 CASSSLSGSGQPQHF TRBV28*01 TRBJ1-5*01 HLA-A*02:01 B2M MHCI YVLDHLIVV BRLF1 EBV PMID:34811538 tetramer-sort yes amplicon-seq effector memory T cells T1D T1D_7 chip0514_445682 PBMC +11988 CALSDASNTSKLIF TRAV9-2*01 TRAJ37*01 CASSHGLAGNEQFF TRBV7-6*01 TRBJ2-1*01 HLA-A*02:01 B2M MHCI RLLPLLALL PREINS HomoSapiens PMID:34811538 tetramer-sort yes amplicon-seq Naive T cells T1D T1D_7 chip0514_630051 PBMC +11989 CSARDRTGNGYTF TRBV20-1*01 TRBJ1-2*01 HLA-A*02:01 B2M MHCI GLCTLVAML BLMF1 EBV PMID:34811538 tetramer-sort yes amplicon-seq effector memory T cells T1D T1D_8 chip0514_273315 PBMC +11990 CAVNPPGSGYSTLTF TRAV12-2*01 TRAJ11*01 CASSLSAEAFF TRBV5-1*01 TRBJ1-1*01 HLA-A*02:01 B2M MHCI LLAGIGTVPI PGT HomoSapiens PMID:34811538 tetramer-sort yes amplicon-seq Naive T cells T1D T1D_8 chip0514_849478 PBMC +11992 RAVGPRcg?AGDMLTF TRAV36/DV7*01 TRAJ39*01 CSVDRGFSYNEQFF TRBV29-1*01 TRBJ2-1*01 HLA-A*02:01 B2M MHCI YLQQNWWTL LMP1 EBV PMID:34811538 tetramer-sort yes amplicon-seq Naive T cells T1D T1D_7 chip0514_246464 PBMC +11993 CASRDGGNYGYTF TRBV2*01 TRBJ1-2*01 HLA-A*02:01 B2M MHCI VIVMLTPLV PTPRN HomoSapiens PMID:34811538 tetramer-sort yes amplicon-seq Naive T cells T1D T1D_8 chip0514_711314 PBMC +11994 CAVNGDTGNQFYF TRAV12-2*01 TRAJ49*01 CASSYGQGLGKLFF TRBV6-2*01,TRBV6-3*01 TRBJ1-4*01 HLA-A*02:01 B2M MHCI GILGFVFTL M1 InfluenzaA PMID:34811538 tetramer-sort yes amplicon-seq Naive T cells T1D T1D_7 chip0514_738711 PBMC +11996 CSARDRGLGNTIYF TRBV20-1*01 TRBJ1-3*01 HLA-A*02:01 B2M MHCI GLCTLVAML BLMF1 EBV PMID:34811538 tetramer-sort yes amplicon-seq effector memory T cells T1D T1D_8 chip0514_121895 PBMC +11997 CALSAWGSGSARQLTF TRAV16*01 TRAJ22*01 HLA-A*02:01 B2M MHCI YVLDHLIVV BRLF1 EBV PMID:34811538 tetramer-sort yes amplicon-seq effector T cells T1D T1D_7 chip0514_539552 PBMC +11998 CAMSISNFGNEKLTF TRAV12-3*01 TRAJ48*01 HLA-A*02:01 B2M MHCI LLAGIGTVPI PGT HomoSapiens PMID:34811538 tetramer-sort yes amplicon-seq Naive T cells T1D T1D_7 chip0514_452495 PBMC +12000 CSADRDNEQFF TRBV29-1*01 TRBJ2-1*01 HLA-A*02:01 B2M MHCI CINGVCWTV NS3 HCV PMID:34811538 tetramer-sort yes amplicon-seq Naive T cells T1D T1D_7 chip0514_23331 PBMC +12001 CAPRDLLQag??ggRDTGELFF TRBV24-1*01 TRBJ2-2*01 HLA-A*02:01 B2M MHCI GIIYIIYKL P3A CoxsackievirusB PMID:34811538 tetramer-sort yes amplicon-seq effector T cells T1D T1D_7 chip0514_698597 PBMC +12002 CAGAGA*LMF TRAV27*01 TRAJ31*01 CASSFLAGAGGEQFF TRBV27*01 TRBJ2-1*01 HLA-A*02:01 B2M MHCI LVGPTPVNI POL HIV-1 PMID:34811538 tetramer-sort yes amplicon-seq Naive T cells T1D T1D_7 chip0514_439966 PBMC +12003 CASSVALAGNEQYF TRBV9*01 TRBJ2-7*01 HLA-A*02:01 B2M MHCI LLAGIGTVPI PGT HomoSapiens PMID:34811538 tetramer-sort yes amplicon-seq Naive T cells T1D T1D_7 chip0514_599221 PBMC +12004 CASSRQGGSNYGYTF TRBV6-1*01 TRBJ1-2*01 HLA-A*02:01 B2M MHCI FLYALALLL LMP2 EBV PMID:34811538 tetramer-sort yes amplicon-seq transitional T cells between effector and memory populations T1D T1D_7 chip0514_666525 PBMC +12005 CSVENHATGGRVTF TRBV29-1*01 TRBJ1-2*01 HLA-A*02:01 B2M MHCI YVLDHLIVV BRLF1 EBV PMID:34811538 tetramer-sort yes amplicon-seq effector T cells T1D T1D_8 chip0514_228794 PBMC +12006 CASSRTSSYNEQFF TRBV7-6*01 TRBJ2-1*01 HLA-A*02:01 B2M MHCI SLSPLQAEL PTPRN HomoSapiens PMID:34811538 tetramer-sort yes amplicon-seq Naive T cells T1D T1D_7 chip0514_690455 PBMC +12007 CASVINLGGASEQYF TRBV28*01 TRBJ2-7*01 HLA-A*02:01 B2M MHCI YVLDHLIVV BRLF1 EBV PMID:34811538 tetramer-sort yes amplicon-seq effector memory T cells T1D T1D_7 chip0514_210398 PBMC +12008 CATEGDSGYSTLTF TRAV17*01 TRAJ11*01 HLA-A*02:01 B2M MHCI FLYALALLL LMP2 EBV PMID:34811538 tetramer-sort yes amplicon-seq effector T cells T1D T1D_7 chip0514_227186 PBMC +12009 CAFLISNFGNEKLTF TRAV12-3*01 TRAJ48*01 CASSHALTGEETDTQYF TRBV11-2*01 TRBJ2-3*01 HLA-A*02:01 B2M MHCI LLAGIGTVPI PGT HomoSapiens PMID:34811538 tetramer-sort yes amplicon-seq Naive T cells T1D T1D_7 chip0514_54615 PBMC +12010 CSVETGQGMDIQYF TRBV29-1*01 TRBJ2-4*01 HLA-A*02:01 B2M MHCI RGPGRAFVTI GP160 HIV-1 PMID:34811538 tetramer-sort yes amplicon-seq Naive T cells T1D T1D_7 chip0514_246473 PBMC +12011 CATVGDSGYSTLTF TRAV17*01 TRAJ11*01 CASSLQGGNIQYF TRBV6-1*01 TRBJ2-4*01 HLA-A*02:01 B2M MHCI FLYALALLL LMP2 EBV PMID:34811538 tetramer-sort yes amplicon-seq effector memory T cells T1D T1D_8 chip0514_503228 PBMC +12012 CAVNMGGGYQKVTF TRAV12-2*01 TRAJ13*01 HLA-A*02:01 B2M MHCI LLSLFSLWL ZNT8 HomoSapiens PMID:34811538 tetramer-sort yes amplicon-seq Naive T cells T1D T1D_7 chip0514_377631 PBMC +12013 CATEGDSGYSTLTF TRAV17*01 TRAJ11*01 CARSPQGGGYGYTF TRBV6-1*01 TRBJ1-2*01 HLA-A*02:01 B2M MHCI FLYALALLL LMP2 EBV PMID:34811538 tetramer-sort yes amplicon-seq transitional T cells between effector and memory populations T1D T1D_7 chip0514_246795 PBMC +12015 CASSILGLSNQPQHF TRBV19*01 TRBJ1-5*01 HLA-A*02:01 B2M MHCI ALGIGILTV MART1 HomoSapiens PMID:34811538 tetramer-sort yes amplicon-seq Naive T cells T1D T1D_7 chip0514_760118 PBMC +12016 CAVRAFSGGYNKLIF TRAV3*01 TRAJ4*01 CASRAEAYLNTGELFF TRBV6-1*01 TRBJ2-2*01 HLA-A*02:01 B2M MHCI GLCTLVAML BLMF1 EBV PMID:34811538 tetramer-sort yes amplicon-seq effector memory T cells T1D T1D_7 chip0514_604970 PBMC +12017 CAVGKAAGNKLTF TRAV12-2*01 TRAJ17*01 HLA-A*02:01 B2M MHCI YLLPGWKL VP3 RotavirusA PMID:34811538 tetramer-sort yes amplicon-seq Naive T cells T1D T1D_8 chip0514_197016 PBMC +12018 CAMSASNFGNEKLTF TRAV12-3*01 TRAJ48*01 CASLSNRWDTEAFF TRBV2*01 TRBJ1-1*01 HLA-A*02:01 B2M MHCI LLAGIGTVPI PGT HomoSapiens PMID:34811538 tetramer-sort yes amplicon-seq Naive T cells T1D T1D_7 chip0514_142643 PBMC +12019 CAAGAAGNKLTF TRAV8-1*01 TRAJ17*01 CASSLFKDASGELFF TRBV11-3*01 TRBJ2-2*01 HLA-A*02:01 B2M MHCI YVLDHLIVV BRLF1 EBV PMID:34811538 tetramer-sort yes amplicon-seq effector T cells T1D T1D_7 chip0514_449202 PBMC +12021 CAVKDTDKLIF TRAV8-1*01 TRAJ34*01 HLA-A*02:01 B2M MHCI YVLDHLIVV BRLF1 EBV PMID:34811538 tetramer-sort yes amplicon-seq effector memory T cells T1D T1D_7 chip0514_255925 PBMC +12022 CAMSLDNYGQNFVF TRAV12-3*01 TRAJ26*01 HLA-A*02:01 B2M MHCI LLAGIGTVPI PGT HomoSapiens PMID:34811538 tetramer-sort yes amplicon-seq Naive T cells T1D T1D_7 chip0514_142919 PBMC +12023 CASSFPYAGAANNEQFF TRBV12-3*01,TRBV12-4*01 TRBJ2-1*01 HLA-A*02:01 B2M MHCI YVLDHLIVV BRLF1 EBV PMID:34811538 tetramer-sort yes amplicon-seq transitional T cells between effector and memory populations T1D T1D_7 chip0514_247680 PBMC +12024 CAVRGGADGLTF TRAV8-1*01 TRAJ45*01 CASSLAEYNEQFF TRBV5-5*01 TRBJ2-1*01 HLA-A*02:01 B2M MHCI YLLEMLWRL LMP1 EBV PMID:34811538 tetramer-sort yes amplicon-seq Naive T cells T1D T1D_7 chip0514_662439 PBMC +12025 CSATDSTYNEQFF TRBV20-1*01 TRBJ2-1*01 HLA-A*02:01 B2M MHCI YVLDHLIVV BRLF1 EBV PMID:34811538 tetramer-sort yes amplicon-seq effector memory T cells T1D T1D_7 chip0514_333341 PBMC +12026 CASSASGAYNEQFF TRBV19*01 TRBJ2-1*01 HLA-A*02:01 B2M MHCI GILGFVFTL M1 InfluenzaA PMID:34811538 tetramer-sort yes amplicon-seq Naive T cells T1D T1D_7 chip0514_21245 PBMC +12027 CAAPEGNTPLVF TRAV12-2*01 TRAJ29*01 CASSLVGTDTQYF TRBV11-3*01 TRBJ2-3*01 HLA-A*02:01 B2M MHCI LLAGIGTVPI PGT HomoSapiens PMID:34811538 tetramer-sort yes amplicon-seq Naive T cells T1D T1D_7 chip0514_75919 PBMC +12028 CATSGWQGSEETQYF TRBV24-1*01 TRBJ2-5*01 HLA-A*02:01 B2M MHCI YVLDHLIVV BRLF1 EBV PMID:34811538 tetramer-sort yes amplicon-seq effector T cells T1D T1D_7 chip0514_552740 PBMC +12029 CASSSLSGSGQPQHF TRBV28*01 TRBJ1-5*01 HLA-A*02:01 B2M MHCI YVLDHLIVV BRLF1 EBV PMID:34811538 tetramer-sort yes amplicon-seq effector memory T cells T1D T1D_7 chip0514_569991 PBMC +12030 CASSPLAGETQYF TRBV7-9*01 TRBJ2-5*01 HLA-A*02:01 B2M MHCI RLLPLLALLAL INS HomoSapiens PMID:34811538 tetramer-sort yes amplicon-seq Naive T cells T1D T1D_7 chip0514_292740 PBMC +12031 CAVKDTDKLIF TRAV8-1*01 TRAJ34*01 HLA-A*02:01 B2M MHCI YVLDHLIVV BRLF1 EBV PMID:34811538 tetramer-sort yes amplicon-seq effector memory T cells T1D T1D_7 chip0514_347755 PBMC +12032 CAVEGWGTDKLIF TRAV12-2*01 TRAJ34*01 HLA-A*02:01 B2M MHCI FLGKIWPSYK GAG HIV-1 PMID:34811538 tetramer-sort yes amplicon-seq Naive T cells T1D T1D_7 chip0514_382803 PBMC +12034 CAMSESNFGNEKLTF TRAV12-3*01 TRAJ48*01 CASSLASAASNQPQHF TRBV5-6*01 TRBJ1-5*01 HLA-A*02:01 B2M MHCI LLAGIGTVPI PGT HomoSapiens PMID:34811538 tetramer-sort yes amplicon-seq Naive T cells T1D T1D_7 chip0514_552053 PBMC +12035 CAVETGNPFYF TRAV12-2*01 TRAJ49*01 CAWSVGQGEAFF TRBV30*01 TRBJ1-1*01 HLA-A*02:01 B2M MHCI TLLANVTAV VP6 RotavirusA PMID:34811538 tetramer-sort yes amplicon-seq transitional T cells between effector and memory populations T1D T1D_8 chip0514_193164 PBMC +12038 CAESSGASGKLIF TRAV5*01 TRAJ37*01 CSVGTGGTNEKLFF TRBV29-1*01 TRBJ1-4*01 HLA-A*02:01 B2M MHCI GLCTLVAML BLMF1 EBV PMID:34811538 tetramer-sort yes amplicon-seq effector T cells T1D T1D_8 chip0514_191403 PBMC +12039 CAFMIGAGGTSYGKPTF TRAV38-1*01 TRAJ52*01 CASSMGSYGYTF TRBV19*01 TRBJ1-2*01 HLA-A*02:01 B2M MHCI GILGFVFTL M1 InfluenzaA PMID:34811538 tetramer-sort yes amplicon-seq transitional T cells between effector and memory populations T1D T1D_8 chip0514_784030 PBMC +12040 CAVNSGYSTLTS TRAV8-1*01 TRAJ11*01 CASSPLQGSGTEAFF TRBV28*01 TRBJ1-1*01 HLA-A*02:01 B2M MHCI YVLDHLIVV BRLF1 EBV PMID:34811538 tetramer-sort yes amplicon-seq effector T cells T1D T1D_8 chip0514_843278 PBMC +12041 CAPQATDKLIF TRAV12-1*01 TRAJ34*01 CASSASGNIQYF TRBV2*01 TRBJ2-4*01 HLA-A*02:01 B2M MHCI LLSLFSLWL ZNT8 HomoSapiens PMID:34811538 tetramer-sort yes amplicon-seq Naive T cells T1D T1D_7 chip0514_408815 PBMC +12042 CAMAQSNFGNEKLTF TRAV12-3*01 TRAJ48*01 CASSLALPLARNEQFF TRBV11-3*01 TRBJ2-1*01 HLA-A*02:01 B2M MHCI LLAGIGTVPI PGT HomoSapiens PMID:34811538 tetramer-sort yes amplicon-seq Naive T cells T1D T1D_7 chip0514_424515 PBMC +12043 CASSHVEQFF TRBV7-9*01 TRBJ2-1*01 HLA-A*02:01 B2M MHCI ALGDLFQSI ZNT8 HomoSapiens PMID:34811538 tetramer-sort yes amplicon-seq transitional T cells between effector and memory populations T1D T1D_7 chip0514_81471 PBMC +12044 CASSFTVSRQPQHF TRBV27*01 TRBJ1-5*01 HLA-A*02:01 B2M MHCI YVLDHLIVV BRLF1 EBV PMID:34811538 tetramer-sort yes amplicon-seq effector memory T cells T1D T1D_8 chip0514_77936 PBMC +12045 CAMSFSNFGNEKLTF TRAV12-3*01 TRAJ48*01 CASKSPDPRGNTEAFF TRBV6-1*01 TRBJ1-1*01 HLA-A*02:01 B2M MHCI LLAGIGTVPI PGT HomoSapiens PMID:34811538 tetramer-sort yes amplicon-seq Naive T cells T1D T1D_8 chip0514_695159 PBMC +12046 CAVKDTDALVF TRAV8-1*01 TRAJ34*01 HLA-A*02:01 B2M MHCI YVLDHLIVV BRLF1 EBV PMID:34811538 tetramer-sort yes amplicon-seq effector memory T cells T1D T1D_7 chip0514_378870 PBMC +12047 CAASDYGGSPGLLLF TRAV29/DV5*01 TRAJ42*01 CASSGGPEQYF TRBV2*01 TRBJ2-7*01 HLA-A*02:01 B2M MHCI RGPGRAFVTI GP160 HIV-1 PMID:34811538 tetramer-sort yes amplicon-seq Naive T cells T1D T1D_7 chip0514_550404 PBMC +12048 CAVPNTGTASKLTF TRAV12-2*01 TRAJ44*01 HLA-A*02:01 B2M MHCI ALAGIGILTV MART1 HomoSapiens PMID:34811538 tetramer-sort yes amplicon-seq Naive T cells T1D T1D_7 chip0514_535391 PBMC +12049 CALMQg?cNMLTF TRAV8-4*01 TRAJ39*01 HLA-A*02:01 B2M MHCI FLYALALLL LMP2 EBV PMID:34811538 tetramer-sort yes amplicon-seq effector memory T cells T1D T1D_7 chip0514_206116 PBMC +12050 CAASVSSDYKLTF TRAV29/DV5*01 TRAJ53*01 CASSSFHIQGGYEQYF TRBV28*01 TRBJ2-7*01 HLA-A*02:01 B2M MHCI VLFGLGFAI IGRP HomoSapiens PMID:34811538 tetramer-sort yes amplicon-seq effector T cells T1D T1D_7 chip0514_156053 PBMC +12051 CASSPGSLAKNIQYF TRBV12-3*01,TRBV12-4*01 TRBJ2-4*01 HLA-A*02:01 B2M MHCI LLAGIGTVPI PGT HomoSapiens PMID:34811538 tetramer-sort yes amplicon-seq Naive T cells T1D T1D_7 chip0514_539788 PBMC +12054 CAATQGGSEKLVF TRAV21*01,TRAV12-3*01 TRAJ57*01 CASSLWTEGSEQYF TRBV6-2*01,TRBV6-3*01 TRBJ2-7*01 HLA-A*02:01 B2M MHCI MVWGPDPLYV DUF5119 HomoSapiens PMID:34811538 tetramer-sort yes amplicon-seq Naive T cells T1D T1D_7 chip0514_394238 PBMC +12056 CASSQGYEQYF TRBV6-1*01 TRBJ2-7*01 HLA-A*02:01 B2M MHCI ILSAHVATA ZNT8 HomoSapiens PMID:34811538 tetramer-sort yes amplicon-seq Naive T cells T1D T1D_7 chip0514_664459 PBMC +12057 CASSYQGGRGGYTF TRBV6-5*01,TRBV6-8*01 TRBJ1-2*01 HLA-A*02:01 B2M MHCI FLYALALLL LMP2 EBV PMID:34811538 tetramer-sort yes amplicon-seq transitional T cells between effector and memory populations T1D T1D_7 chip0514_647183 PBMC +12059 CAVPNTGGFKTIF TRAV20*01 TRAJ9*01 CASSLRGEYFGYTF TRBV27*01 TRBJ1-2*01 HLA-A*02:01 B2M MHCI LVGPTPVNI POL HIV-1 PMID:34811538 tetramer-sort yes amplicon-seq Naive T cells T1D T1D_7 chip0514_762358 PBMC +12060 CASSLELTSYEQYF TRBV5-5*01 TRBJ2-7*01 HLA-A*02:01 B2M MHCI LVGPTPVNI POL HIV-1 PMID:34811538 tetramer-sort yes amplicon-seq Naive T cells T1D T1D_7 chip0514_642006 PBMC +12061 CASSSQGGGDEAFF TRBV6-5*01 TRBJ1-1*01 HLA-A*02:01 B2M MHCI FLYALALLL LMP2 EBV PMID:34811538 tetramer-sort yes amplicon-seq transitional T cells between effector and memory populations T1D T1D_7 chip0514_214839 PBMC +12062 CASSRQGGSNLWLHL TRBV6-1*01 TRBJ1-2*01 HLA-A*02:01 B2M MHCI FLYALALLL LMP2 EBV PMID:34811538 tetramer-sort yes amplicon-seq transitional T cells between effector and memory populations T1D T1D_7 chip0514_648011 PBMC +12063 CAVLMDSNYQLIW TRAV21*01 TRAJ33*01 CASSGDGMNTEAFF TRBV10-2*01 TRBJ1-1*01 HLA-A*02:01 B2M MHCI CLGGLLTMV LMP2A EBV PMID:34811538 tetramer-sort yes amplicon-seq effector memory T cells T1D T1D_7 chip0514_360176 PBMC +12064 CAMSISNFGNEKLTF TRAV12-3*01 TRAJ48*01 CASSQGGGSTEAFF TRBV4-1*01 TRBJ1-1*01 HLA-A*02:01 B2M MHCI LLAGIGTVPI PGT HomoSapiens PMID:34811538 tetramer-sort yes amplicon-seq Naive T cells T1D T1D_8 chip0514_239025 PBMC +12066 CAVNPNTGNQFYF TRAV12-2*01 TRAJ49*01 HLA-A*02:01 B2M MHCI ALAGIGILTV MART1 HomoSapiens PMID:34811538 tetramer-sort yes amplicon-seq Naive T cells T1D T1D_7 chip0514_868208 PBMC +12067 CSVGDGGTNEKLFF TRBV29-1*01 TRBJ1-4*01 HLA-A*02:01 B2M MHCI GLCTLVAML BLMF1 EBV PMID:34811538 tetramer-sort yes amplicon-seq effector T cells T1D T1D_7 chip0514_575186 PBMC +12068 CASSFNVGTVPYEQYF TRBV27*01 TRBJ2-7*01 HLA-A*02:01 B2M MHCI YVLDHLIVV BRLF1 EBV PMID:34811538 tetramer-sort yes amplicon-seq effector memory T cells T1D T1D_7 chip0514_42071 PBMC +12069 CAVTLGF TRAV12-2*01 TRAJ37*01 CASRSDRg?cPNLWLHL TRBV12-3*01,TRBV12-4*01 TRBJ1-2*01 HLA-A*02:01 B2M MHCI LLAGIGTVPI PGT HomoSapiens PMID:34811538 tetramer-sort yes amplicon-seq Naive T cells T1D T1D_7 chip0514_690395 PBMC +12070 CAVSLSNFGNEKLTF TRAV12-2*01 TRAJ48*01 HLA-A*02:01 B2M MHCI LLAGIGTVPI PGT HomoSapiens PMID:34811538 tetramer-sort yes amplicon-seq Naive T cells T1D T1D_7 chip0514_684991 PBMC +12071 CAVDFSYGRLLF TRAV12-2*01 TRAJ31*01 HLA-A*02:01 B2M MHCI LLAGIGTVPI PGT HomoSapiens PMID:34811538 tetramer-sort yes amplicon-seq Naive T cells T1D T1D_7 chip0514_677821 PBMC +12072 CAVTGSYIPTF TRAV12-2*01 TRAJ6*01 CASSPSGVIYEQYF TRBV9*01 TRBJ2-7*01 HLA-A*02:01 B2M MHCI LLAGIGTVPI PGT HomoSapiens PMID:34811538 tetramer-sort yes amplicon-seq Naive T cells T1D T1D_8 chip0514_745562 PBMC +12073 CATDKYDYKLSF TRAV17*01 TRAJ20*01 HLA-A*02:01 B2M MHCI GIIYIIYKL P3A CoxsackievirusB PMID:34811538 tetramer-sort yes amplicon-seq Naive T cells T1D T1D_7 chip0514_66578 PBMC +12074 CAVGDRARGSQGNLIF TRAV8-3*01 TRAJ42*01 CASSCGGINEQFF TRBV7-6*01 TRBJ2-1*01 HLA-A*02:01 B2M MHCI YLLEMLWRL LMP1 EBV PMID:34811538 tetramer-sort yes amplicon-seq Naive T cells T1D T1D_7 chip0514_386181 PBMC +12075 CLVGQTRLMF TRAV4*01 TRAJ31*01 CASSFGGGDHYEQYF TRBV27*01 TRBJ2-7*01 HLA-A*02:01 B2M MHCI CINGVCWTV NS3 HCV PMID:34811538 tetramer-sort yes amplicon-seq Naive T cells T1D T1D_7 chip0514_43435 PBMC +12076 GQYGGATNKLIF TRAV14/DV4*01 TRAJ32*01 CASSYQGGKDGYTF TRBV6-5*01 TRBJ1-2*01 HLA-A*02:01 B2M MHCI FLYALALLL LMP2 EBV PMID:34811538 tetramer-sort yes amplicon-seq central memory T cells T1D T1D_8 chip0514_438501 PBMC +12077 CAVTPNASLLF TRAV3*01 TRAJ31*01 CASSLSVSEFYNEQFF TRBV27*01 TRBJ2-1*01 HLA-A*02:01 B2M MHCI YVLDHLIVV BRLF1 EBV PMID:34811538 tetramer-sort yes amplicon-seq effector memory T cells T1D T1D_7 chip0514_577842 PBMC +12078 CAVKDTDKLIF TRAV8-1*01 TRAJ34*01 CSATDSTYNEQFF TRBV20-1*01 TRBJ2-1*01 HLA-A*02:01 B2M MHCI YVLDHLIVV BRLF1 EBV PMID:34811538 tetramer-sort yes amplicon-seq effector T cells T1D T1D_7 chip0514_403677 PBMC +12080 CASHRDDKIIF TRAV8-1*01 TRAJ30*01 CAWSADSTDTQYF TRBV30*01 TRBJ2-3*01 HLA-A*02:01 B2M MHCI YLLPGWKL VP3 RotavirusA PMID:34811538 tetramer-sort yes amplicon-seq Naive T cells T1D T1D_7 chip0514_816634 PBMC +12081 CASSIDSYSYNEQFF TRBV27*01 TRBJ2-1*01 HLA-A*02:01 B2M MHCI YLLEMLWRL LMP1 EBV PMID:34811538 tetramer-sort yes amplicon-seq natural killer-like T cells T1D T1D_7 chip0514_375703 PBMC +12082 CAVNAGGFKTIF TRAV12-2*01 TRAJ9*01 HLA-A*02:01 B2M MHCI LLAGIGTVPI PGT HomoSapiens PMID:34811538 tetramer-sort yes amplicon-seq Naive T cells T1D T1D_7 chip0514_413652 PBMC +12083 CATSGWQGSEETQYF TRBV24-1*01 TRBJ2-5*01 HLA-A*02:01 B2M MHCI YVLDHLIVV BRLF1 EBV PMID:34811538 tetramer-sort yes amplicon-seq effector T cells T1D T1D_7 chip0514_114408 PBMC +12084 CAVSSGYSTLTF TRAV8-1*01 TRAJ11*01 CASSSLSGSGQPQHF TRBV28*01 TRBJ1-5*01 HLA-A*02:01 B2M MHCI YVLDHLIVV BRLF1 EBV PMID:34811538 tetramer-sort yes amplicon-seq effector memory T cells T1D T1D_7 chip0514_720024 PBMC +12085 CAMTLSNFGNEKLTF TRAV12-3*01 TRAJ48*01 HLA-A*02:01 B2M MHCI LLAGIGTVPI PGT HomoSapiens PMID:34811538 tetramer-sort yes amplicon-seq Naive T cells T1D T1D_8 chip0514_191577 PBMC +12087 CAMSASNFGNEKLTF TRAV12-3*01 TRAJ48*01 CASASRERGFQETQYF TRBV3-1*01 TRBJ2-5*01 HLA-A*02:01 B2M MHCI LLAGIGTVPI PGT HomoSapiens PMID:34811538 tetramer-sort yes amplicon-seq Naive T cells T1D T1D_7 chip0514_572092 PBMC +12088 CASSLDVAGGGDNQQFF TRBV5-6*01 TRBJ2-1*01 HLA-A*02:01 B2M MHCI LLAGIGTVPI PGT HomoSapiens PMID:34811538 tetramer-sort yes amplicon-seq Naive T cells T1D T1D_7 chip0514_196396 PBMC +12089 CAISESTGELFF TRBV10-3*01 TRBJ2-2*01 HLA-A*02:01 B2M MHCI LLFNILGGWV NS4B HCV PMID:34811538 tetramer-sort yes amplicon-seq Naive T cells T1D T1D_8 chip0514_519587 PBMC +12090 CAMSLSNFGNEKLTF TRAV12-3*01 TRAJ48*01 HLA-A*02:01 B2M MHCI LLAGIGTVPI PGT HomoSapiens PMID:34811538 tetramer-sort yes amplicon-seq Naive T cells T1D T1D_7 chip0514_824768 PBMC +12091 CASGISNFGNEKLTF TRAV12-3*01 TRAJ48*01 CASSQEGQGLSGELFF TRBV14*01 TRBJ2-2*01 HLA-A*02:01 B2M MHCI LLAGIGTVPI PGT HomoSapiens PMID:34811538 tetramer-sort yes amplicon-seq Naive T cells T1D T1D_7 chip0514_222100 PBMC +12092 CAMGPQAGTALIF TRAV12-3*01 TRAJ15*01 CASSLEYREYEQYF TRBV7-6*01,TRBV11-2*01 TRBJ2-7*01 HLA-A*02:01 B2M MHCI LLAGIGTVPI PGT HomoSapiens PMID:34811538 tetramer-sort yes amplicon-seq Naive T cells T1D T1D_7 chip0514_795253 PBMC +12093 CSVEVFRQGSSYEQYF TRBV29-1*01 TRBJ2-7*01 HLA-A*02:01 B2M MHCI RGPGRAFVTI GP160 HIV-1 PMID:34811538 tetramer-sort yes amplicon-seq Naive T cells T1D T1D_7 chip0514_69070 PBMC +12095 WGRRFW??cDSDYTF TRBV7-9*01 TRBJ1-2*01 HLA-A*02:01 B2M MHCI LLAGIGTVPI PGT HomoSapiens PMID:34811538 tetramer-sort yes amplicon-seq Naive T cells T1D T1D_7 chip0514_59546 PBMC +12096 CAVGGGGADGLTF TRAV12-2*01 TRAJ45*01 CASSQDTAGGTEAFF TRBV3-1*01 TRBJ1-1*01 HLA-A*02:01 B2M MHCI ALAGIGILTV MART1 HomoSapiens PMID:34811538 tetramer-sort yes amplicon-seq Naive T cells T1D T1D_7 chip0514_712043 PBMC +12097 CASSRERGPRPNAQYF TRBV7-2*01 TRBJ2-7*01 HLA-A*02:01 B2M MHCI LLPPLLEHL PTPRN HomoSapiens PMID:34811538 tetramer-sort yes amplicon-seq Naive T cells T1D T1D_7 chip0514_320711 PBMC +12098 CASSPQGRGYGYTF TRBV6-1*01 TRBJ1-2*01 HLA-A*02:01 B2M MHCI FLYALALLL LMP2 EBV PMID:34811538 tetramer-sort yes amplicon-seq effector memory T cells T1D T1D_7 chip0514_856897 PBMC +12099 CAVNGDNFNKFYF TRAV12-2*01 TRAJ21*01 CATSRAGELFF TRBV24-1*01 TRBJ2-2*01 HLA-A*02:01 B2M MHCI ALAGIGILTV MART1 HomoSapiens PMID:34811538 tetramer-sort yes amplicon-seq transitional T cells between effector and memory populations T1D T1D_7 chip0514_758670 PBMC +12100 CASSLGGKSSYEQYF TRBV12-3*01,TRBV12-4*01 TRBJ2-7*01 HLA-A*02:01 B2M MHCI MVWGPDPLYV DUF5119 HomoSapiens PMID:34811538 tetramer-sort yes amplicon-seq Naive T cells T1D T1D_7 chip0514_604713 PBMC +12101 CAFMKDSNYQLIW TRAV24*01 TRAJ33*01 CASSYGLYNEQFF TRBV7-9*01 TRBJ2-1*01 HLA-A*02:01 B2M MHCI RLLPLLALLAL INS HomoSapiens PMID:34811538 tetramer-sort yes amplicon-seq Naive T cells T1D T1D_7 chip0514_234395 PBMC +12102 CASIGGTIYNEQFF TRBV19*01 TRBJ2-1*01 HLA-A*02:01 B2M MHCI YVLDHLIVV BRLF1 EBV PMID:34811538 tetramer-sort yes amplicon-seq effector memory T cells T1D T1D_7 chip0514_807911 PBMC +12103 CAVSSGYSTLTF TRAV8-1*01 TRAJ11*01 CASSSLSGSGQPQHF TRBV28*01 TRBJ1-5*01 HLA-A*02:01 B2M MHCI YVLDHLIVV BRLF1 EBV PMID:34811538 tetramer-sort yes amplicon-seq effector memory T cells T1D T1D_7 chip0514_311490 PBMC +12104 CAAGEGYSTLTF TRAV12-2*01 TRAJ11*01 CASMTGSEAFF TRBV19*01 TRBJ1-1*01 HLA-A*02:01 B2M MHCI ALAGIGILTV MART1 HomoSapiens PMID:34811538 tetramer-sort yes amplicon-seq Naive T cells T1D T1D_7 chip0514_683493 PBMC +12105 CAMSGANFGNEKLTF TRAV12-3*01 TRAJ48*01 CASSKDRVEFGDDTDTQYF TRBV5-5*01 TRBJ2-3*01 HLA-A*02:01 B2M MHCI LLAGIGTVPI PGT HomoSapiens PMID:34811538 tetramer-sort yes amplicon-seq Naive T cells T1D T1D_7 chip0514_696851 PBMC +12106 CASSSLSGSDQPQHF TRBV28*01 TRBJ1-5*01 HLA-A*02:01 B2M MHCI YVLDHLIVV BRLF1 EBV PMID:34811538 tetramer-sort yes amplicon-seq effector memory T cells T1D T1D_7 chip0514_840374 PBMC +12107 CASSEVDQYEQYF TRBV6-1*01 TRBJ2-7*01 HLA-A*02:01 B2M MHCI YVLDHLIVV BRLF1 EBV PMID:34811538 tetramer-sort yes amplicon-seq transitional T cells between effector and memory populations T1D T1D_7 chip0514_101173 PBMC +12108 CAVAGQKLLF TRAV12-2*01 TRAJ16*01 CAWSGAGTSYEQYF TRBV30*01 TRBJ2-7*01 HLA-A*02:01 B2M MHCI ALGIGILTV MART1 HomoSapiens PMID:34811538 tetramer-sort yes amplicon-seq Naive T cells T1D T1D_8 chip0514_379612 PBMC +12109 CASSWTSGSSYEQYF TRBV19*01 TRBJ2-7*01 HLA-A*02:01 B2M MHCI VAANIVLTV ZNT8 HomoSapiens PMID:34811538 tetramer-sort yes amplicon-seq Naive T cells T1D T1D_7 chip0514_430441 PBMC +12110 CAFIHNNNDMRF TRAV38-1*01 TRAJ43*01 CASSSPTSGRLQETQYF TRBV28*01 TRBJ2-5*01 HLA-A*02:01 B2M MHCI LLFNILGGWV NS4B HCV PMID:34811538 tetramer-sort yes amplicon-seq Naive T cells T1D T1D_7 chip0514_384507 PBMC +12111 CAMSISNFGNEKLTF TRAV12-3*01 TRAJ48*01 CASSRSRDTQYF TRBV28*01 TRBJ2-3*01 HLA-A*02:01 B2M MHCI LLAGIGTVPI PGT HomoSapiens PMID:34811538 tetramer-sort yes amplicon-seq Naive T cells T1D T1D_7 chip0514_432139 PBMC +12113 CATVGLSGYSTLTF TRAV17*01 TRAJ11*01 HLA-A*02:01 B2M MHCI FLYALALLL LMP2 EBV PMID:34811538 tetramer-sort yes amplicon-seq effector memory T cells T1D T1D_7 chip0514_544643 PBMC +12114 CVVTLSGGSYIPTF TRAV8-2*01 TRAJ6*01 CSANPPEGETQYF TRBV20-1*01 TRBJ2-5*01 HLA-A*02:01 B2M MHCI LLAGIGTVPI PGT HomoSapiens PMID:34811538 tetramer-sort yes amplicon-seq Naive T cells T1D T1D_7 chip0514_397585 PBMC +12115 CAMSGSNFGNEKLTF TRAV12-3*01 TRAJ48*01 CASSLGGPYQETQYF TRBV7-8*01 TRBJ2-5*01 HLA-A*02:01 B2M MHCI LLAGIGTVPI PGT HomoSapiens PMID:34811538 tetramer-sort yes amplicon-seq Naive T cells T1D T1D_8 chip0514_619088 PBMC +12117 CGADMAGNARLMF TRAV34*01 TRAJ31*01 LCQ*YTct??cgAQEQYF TRBV19*01 TRBJ2-7*01 HLA-A*02:01 B2M MHCI GILGFVFTL M1 InfluenzaA PMID:34811538 tetramer-sort yes amplicon-seq transitional T cells between effector and memory populations T1D T1D_7 chip0514_867641 PBMC +12118 CAMSRSNFGNEKLTF TRAV12-3*01 TRAJ48*01 CASSHLGDRSHEMNTEAFF TRBV14*01 TRBJ1-1*01 HLA-A*02:01 B2M MHCI LLAGIGTVPI PGT HomoSapiens PMID:34811538 tetramer-sort yes amplicon-seq Naive T cells T1D T1D_7 chip0514_473699 PBMC +12119 CIVRVAGE??tHAGTLLTF TRAV26-1*01 TRAJ39*01 CSARDRDTYEQYF TRBV29-1*01 TRBJ2-7*01 HLA-A*02:01 B2M MHCI CINGVCWTV NS3 HCV PMID:34811538 tetramer-sort yes amplicon-seq Naive T cells T1D T1D_7 chip0514_440161 PBMC +12120 CAVNPSNTGKLIF TRAV3*01 TRAJ37*01 CASSIRAAVEQFF TRBV19*01 TRBJ2-1*01 HLA-A*02:01 B2M MHCI GILGFVFTL M1 InfluenzaA PMID:34811538 tetramer-sort yes amplicon-seq transitional T cells between effector and memory populations T1D T1D_7 chip0514_70250 PBMC +12121 CAVRSSGTYKYIF TRAV41*01 TRAJ40*01 CAISESNTELLAKNIQYF TRBV10-3*01 TRBJ2-4*01 HLA-A*02:01 B2M MHCI LALWGPDPAA INS HomoSapiens PMID:34811538 tetramer-sort yes amplicon-seq Naive T cells T1D T1D_7 chip0514_46435 PBMC +12122 CALSEAKVADAGGFKTIF TRAV19*01 TRAJ9*01 HLA-A*02:01 B2M MHCI IQATVMIIV ZNT8 HomoSapiens PMID:34811538 tetramer-sort yes amplicon-seq Naive T cells T1D T1D_8 chip0514_563340 PBMC +12123 CAVKDTDKLIF TRAV8-1*01 TRAJ34*01 CASSLLAGEQFF TRBV10-1*01 TRBJ2-1*01 HLA-A*02:01 B2M MHCI YVLDHLIVV BRLF1 EBV PMID:34811538 tetramer-sort yes amplicon-seq effector memory T cells T1D T1D_8 chip0514_584130 PBMC +12124 CASSSSRPGGTGEPFF TRBV11-2*01 TRBJ2-2*01 HLA-A*02:01 B2M MHCI LLAGIGTVPI PGT HomoSapiens PMID:34811538 tetramer-sort yes amplicon-seq Naive T cells T1D T1D_8 chip0514_687613 PBMC +12125 CATEGNSGYSTLTF TRAV17*01 TRAJ11*01 CASSYQGGRGGYTF TRBV6-5*01 TRBJ1-2*01 HLA-A*02:01 B2M MHCI FLYALALLL LMP2 EBV PMID:34811538 tetramer-sort yes amplicon-seq central memory T cells T1D T1D_7 chip0514_299977 PBMC +12127 CAISEFQTDTYGYTF TRBV10-3*01 TRBJ1-2*01 HLA-A*02:01 B2M MHCI LLPPLLEHL PTPRN HomoSapiens PMID:34811538 tetramer-sort yes amplicon-seq Naive T cells T1D T1D_7 chip0514_173132 PBMC +12128 CASSLASISKGSYNEQFF TRBV11-1*01 TRBJ2-1*01 HLA-A*02:01 B2M MHCI YLLPRRGPRL POL HCV PMID:34811538 tetramer-sort yes amplicon-seq Naive T cells T1D T1D_7 chip0514_51239 PBMC +12129 CSVEALVGTSTDTQYF TRBV29-1*01 TRBJ2-3*01 HLA-A*02:01 B2M MHCI QLARQQVHV GFAP HomoSapiens PMID:34811538 tetramer-sort yes amplicon-seq Naive T cells T1D T1D_7 chip0514_515692 PBMC +12130 CAMTLSNFGNEKLTF TRAV12-3*01 TRAJ48*01 CASSYGSPGNFNNEQFF TRBV6-5*01 TRBJ2-1*01 HLA-A*02:01 B2M MHCI LLAGIGTVPI PGT HomoSapiens PMID:34811538 tetramer-sort yes amplicon-seq Naive T cells T1D T1D_7 chip0514_631153 PBMC +12131 CASRRNDYKLSF TRAV24*01 TRAJ20*01 CASSGQAYYEQYF TRBV2*01 TRBJ2-7*01 HLA-A*02:01 B2M MHCI HLVEALYLV PREINS HomoSapiens PMID:34811538 tetramer-sort yes amplicon-seq Naive T cells T1D T1D_7 chip0514_122277 PBMC +12132 CASPSSGSEKLVF TRAV27*01 TRAJ57*01 HLA-A*02:01 B2M MHCI YLLPGWKL VP3 RotavirusA PMID:34811538 tetramer-sort yes amplicon-seq Naive T cells T1D T1D_7 chip0514_25329 PBMC +12134 CSVSPAGSSYEQYF TRBV29-1*01 TRBJ2-7*01 HLA-A*02:01 B2M MHCI RGPGRAFVTI GP160 HIV-1 PMID:34811538 tetramer-sort yes amplicon-seq Naive T cells T1D T1D_7 chip0514_259008 PBMC +12135 GAEKY??a*KFYF TRAV13-2*01 TRAJ49*01 CASRIRETQYF TRBV2*01 TRBJ2-5*01 HLA-A*02:01 B2M MHCI VIYQYMDDL POL HIV-1 PMID:34811538 tetramer-sort yes amplicon-seq Naive T cells T1D T1D_8 chip0514_57828 PBMC +12136 CASSLGGLTGELFF TRBV6-1*01 TRBJ2-2*01 HLA-A*02:01 B2M MHCI CLGGLLTMV LMP2A EBV PMID:34811538 tetramer-sort yes amplicon-seq central memory T cells T1D T1D_7 chip0514_278674 PBMC +12138 CSAPGQGLGYTF TRBV20-1*01 TRBJ1-2*01 HLA-A*02:01 B2M MHCI LLSILCIWV ZNT8 HomoSapiens PMID:34811538 tetramer-sort yes amplicon-seq Naive T cells T1D T1D_8 chip0514_854277 PBMC +12139 CAVKNTDKLIF TRAV8-1*01 TRAJ34*01 CASSQDETGFLAGELFF TRBV14*01 TRBJ2-2*01 HLA-A*02:01 B2M MHCI YVLDHLIVV BRLF1 EBV PMID:34811538 tetramer-sort yes amplicon-seq effector memory T cells T1D T1D_7 chip0514_130669 PBMC +12140 CAYWSGQKLLF TRAV38-1*01 TRAJ16*01 CASTTAQgg?VEDYEQYF TRBV4-3*01 TRBJ2-7*01 HLA-A*02:01 B2M MHCI KLVALGINAV NS3 HCV PMID:34811538 tetramer-sort yes amplicon-seq Naive T cells T1D T1D_7 chip0514_807965 PBMC +12141 CAASFNNAGNMLPF TRAV29/DV5*01 TRAJ39*01 HLA-A*02:01 B2M MHCI LLAGIGTVPI PGT HomoSapiens PMID:34811538 tetramer-sort yes amplicon-seq Naive T cells T1D T1D_7 chip0514_780235 PBMC +12142 CASSQEGRETGELFF TRBV14*01 TRBJ2-2*01 HLA-A*02:01 B2M MHCI LLAGIGTVPI PGT HomoSapiens PMID:34811538 tetramer-sort yes amplicon-seq Naive T cells T1D T1D_7 chip0514_740112 PBMC +12143 CAMSRSNFGNEKLTF TRAV12-3*01 TRAJ48*01 HLA-A*02:01 B2M MHCI LLAGIGTVPI PGT HomoSapiens PMID:34811538 tetramer-sort yes amplicon-seq Naive T cells T1D T1D_7 chip0514_403568 PBMC +12144 CAVTTDSWGKLQF TRAV2*01 TRAJ24*01 CAKRDTDTQYF TRBV2*01 TRBJ2-3*01 HLA-A*02:01 B2M MHCI ALAGIGILTV MART1 HomoSapiens PMID:34811538 tetramer-sort yes amplicon-seq Naive T cells T1D T1D_7 chip0514_6130 PBMC +12145 CAVTPWAGNMLTF TRAV12-2*01 TRAJ39*01 CASSLGSLGEEQYF TRBV12-3*01,TRBV12-4*01 TRBJ2-7*01 HLA-A*02:01 B2M MHCI FLGKIWPSYK GAG HIV-1 PMID:34811538 tetramer-sort yes amplicon-seq Naive T cells T1D T1D_7 chip0514_103835 PBMC +12147 CAVDSNYQLIW TRAV39*01 TRAJ33*01 CSATDSYEQYF TRBV20-1*01 TRBJ2-7*01 HLA-A*02:01 B2M MHCI RGPGRAFVTI GP160 HIV-1 PMID:34811538 tetramer-sort yes amplicon-seq Naive T cells T1D T1D_7 chip0514_712606 PBMC +12148 CASSTGAGTGTYEQYF TRBV7-9*01 TRBJ2-7*01 HLA-A*02:01 B2M MHCI LLAGIGTVPI PGT HomoSapiens PMID:34811538 tetramer-sort yes amplicon-seq Naive T cells T1D T1D_7 chip0514_440925 PBMC +12149 CAVQGSQGNLIF TRAV12-2*01 TRAJ42*01 CASSIRSSYEQYF TRBV19*01 TRBJ2-7*01 HLA-A*02:01 B2M MHCI GILGFVFTL M1 InfluenzaA PMID:34811538 tetramer-sort yes amplicon-seq transitional T cells between effector and memory populations T1D T1D_8 chip0514_768892 PBMC +12150 CASSRQVHEQYF TRBV7-7*01 TRBJ2-7*01 HLA-A*02:01 B2M MHCI YVLDHLIVV BRLF1 EBV PMID:34811538 tetramer-sort yes amplicon-seq effector memory T cells T1D T1D_7 chip0514_501795 PBMC +12151 CAVSSGYSTLTF TRAV8-1*01 TRAJ11*01 CASSSLSGSGQPQHF TRBV28*01 TRBJ1-5*01 HLA-A*02:01 B2M MHCI YVLDHLIVV BRLF1 EBV PMID:34811538 tetramer-sort yes amplicon-seq effector memory T cells T1D T1D_7 chip0514_822121 PBMC +12152 CASSSLSGSGQPQHF TRBV28*01 TRBJ1-5*01 HLA-A*02:01 B2M MHCI YVLDHLIVV BRLF1 EBV PMID:34811538 tetramer-sort yes amplicon-seq effector memory T cells T1D T1D_7 chip0514_761248 PBMC +12153 CAGQISNFGNEKLTF TRAV12-3*01 TRAJ48*01 CASSPPQGSSSYNEQFF TRBV12-3*01,TRBV12-4*01 TRBJ2-1*01 HLA-A*02:01 B2M MHCI LLAGIGTVPI PGT HomoSapiens PMID:34811538 tetramer-sort yes amplicon-seq Naive T cells T1D T1D_7 chip0514_145482 PBMC +12154 CAVSSHTGTASKLTF TRAV8-4*01 TRAJ44*01 CASSIRASYEQYF TRBV19*01 TRBJ2-7*01 HLA-A*02:01 B2M MHCI GILGFVFTL M1 InfluenzaA PMID:34811538 tetramer-sort yes amplicon-seq transitional T cells between effector and memory populations T1D T1D_7 chip0514_161048 PBMC +12156 CAASGGSNYKLTF TRAV29/DV5*01 TRAJ53*01 CASSSFHIQGGYEQYF TRBV28*01 TRBJ2-7*01 HLA-A*02:01 B2M MHCI VLFGLGFAI IGRP HomoSapiens PMID:34811538 tetramer-sort yes amplicon-seq effector memory T cells T1D T1D_7 chip0514_751336 PBMC +12157 CAMSISNFGNEKLTF TRAV12-3*01 TRAJ48*01 CASSLQTGRGEKLFF TRBV28*01 TRBJ1-4*01 HLA-A*02:01 B2M MHCI LLAGIGTVPI PGT HomoSapiens PMID:34811538 tetramer-sort yes amplicon-seq Naive T cells T1D T1D_7 chip0514_166713 PBMC +12158 CAMSAGNFGNEKLTF TRAV12-3*01 TRAJ48*01 HLA-A*02:01 B2M MHCI LLAGIGTVPI PGT HomoSapiens PMID:34811538 tetramer-sort yes amplicon-seq Naive T cells T1D T1D_7 chip0514_329188 PBMC +12159 CAVKDTDKLIF TRAV8-1*01 TRAJ34*01 CASSVYYEQYF TRBV6-1*01 TRBJ2-7*01 HLA-A*02:01 B2M MHCI YVLDHLIVV BRLF1 EBV PMID:34811538 tetramer-sort yes amplicon-seq effector T cells T1D T1D_7 chip0514_209939 PBMC +12160 CAMTPGAGNMLTF TRAV12-3*01 TRAJ39*01 CASPPLQEGGAGANVLTF TRBV2*01 TRBJ2-6*01 HLA-A*02:01 B2M MHCI LLAGIGTVPI PGT HomoSapiens PMID:34811538 tetramer-sort yes amplicon-seq Naive T cells T1D T1D_7 chip0514_133469 PBMC +12161 CALTPLWag??gaSQGNLIF TRAV9-2*01 TRAJ42*01 HLA-A*02:01 B2M MHCI VAANIVLTV ZNT8 HomoSapiens PMID:34811538 tetramer-sort yes amplicon-seq Naive T cells T1D T1D_7 chip0514_741476 PBMC +12162 CATSGWQGSEETQYF TRBV24-1*01 TRBJ2-5*01 HLA-A*02:01 B2M MHCI YVLDHLIVV BRLF1 EBV PMID:34811538 tetramer-sort yes amplicon-seq effector memory T cells T1D T1D_7 chip0514_701209 PBMC +12163 CSARDRVGNGYTF TRBV20-1*01 TRBJ1-2*01 HLA-A*02:01 B2M MHCI GLCTLVAML BLMF1 EBV PMID:34811538 tetramer-sort yes amplicon-seq effector T cells T1D T1D_8 chip0514_810289 PBMC +12164 CAVDPSGTYKYIF TRAV8-3*01 TRAJ40*01 CASSYTGTGELFF TRBV7-7*01 TRBJ2-2*01 HLA-A*02:01 B2M MHCI ALWMRLLPL PREINS HomoSapiens PMID:34811538 tetramer-sort yes amplicon-seq Naive T cells T1D T1D_8 chip0514_788452 PBMC +12166 CAAREDTDYKLSF TRAV1-2*01 TRAJ20*01 HLA-A*02:01 B2M MHCI RQFGPDWIVA ADH HomoSapiens PMID:34811538 tetramer-sort yes amplicon-seq Naive T cells T1D T1D_7 chip0514_235170 PBMC +12167 CAPDIWG??tGSYQLTF TRAV19*01 TRAJ28*01 HLA-A*02:01 B2M MHCI GLCTLVAML BLMF1 EBV PMID:34811538 tetramer-sort yes amplicon-seq effector T cells T1D T1D_8 chip0514_883600 PBMC +12168 CAESSGASGKLIF TRAV5*01 TRAJ37*01 CSVGTGGTNEKLFF TRBV29-1*01 TRBJ1-4*01 HLA-A*02:01 B2M MHCI GLCTLVAML BLMF1 EBV PMID:34811538 tetramer-sort yes amplicon-seq effector memory T cells T1D T1D_8 chip0514_807846 PBMC +12169 CASSPNSLYEQYF TRBV7-8*01 TRBJ2-7*01 HLA-A*02:01 B2M MHCI RGPGRAFVTI GP160 HIV-1 PMID:34811538 tetramer-sort yes amplicon-seq Naive T cells T1D T1D_7 chip0514_16007 PBMC +12170 CATDAYSGNTPLVF TRAV17*01 TRAJ29*01 CASSNRQGDTGELFF TRBV7-9*01 TRBJ2-2*01 HLA-A*02:01 B2M MHCI IQATVMIIV ZNT8 HomoSapiens PMID:34811538 tetramer-sort yes amplicon-seq Naive T cells T1D T1D_7 chip0514_748648 PBMC +12171 CATTGNSGYSTLTF TRAV17*01 TRAJ11*01 CASSYQGGNEQFF TRBV6-5*01 TRBJ2-1*01 HLA-A*02:01 B2M MHCI FLYALALLL LMP2 EBV PMID:34811538 tetramer-sort yes amplicon-seq central memory T cells T1D T1D_8 chip0514_780542 PBMC +12172 CSVGGSQGNLIF TRAV27*01 TRAJ42*01 CASSIRSSYEQYF TRBV19*01 TRBJ2-7*01 HLA-A*02:01 B2M MHCI GILGFVFTL M1 InfluenzaA PMID:34811538 tetramer-sort yes amplicon-seq transitional T cells between effector and memory populations T1D T1D_8 chip0514_336194 PBMC +12173 CSASTAGGASGANVLTF TRBV20-1*01 TRBJ2-6*01 HLA-A*02:01 B2M MHCI LLAGIGTVPI PGT HomoSapiens PMID:34811538 tetramer-sort yes amplicon-seq Naive T cells T1D T1D_7 chip0514_247198 PBMC +12174 CAMREGNtg??gaANSKLTF TRAV14/DV4*01 TRAJ56*01 CSATKTDNYGYTF TRBV20-1*01 TRBJ1-2*01 HLA-A*02:01 B2M MHCI YVLDHLIVV BRLF1 EBV PMID:34811538 tetramer-sort yes amplicon-seq effector memory T cells T1D T1D_7 chip0514_108972 PBMC +12175 CVVNVL*a?cRDDKIIF TRAV12-1*01 TRAJ30*01 CASSRQGGSNYGYTF TRBV6-1*01 TRBJ1-2*01 HLA-A*02:01 B2M MHCI FLYALALLL LMP2 EBV PMID:34811538 tetramer-sort yes amplicon-seq central memory T cells T1D T1D_7 chip0514_118928 PBMC +12176 CASENYGGSQGNLIF TRAV12-2*01 TRAJ42*01 HLA-A*02:01 B2M MHCI ALGIGILTV MART1 HomoSapiens PMID:34811538 tetramer-sort yes amplicon-seq Naive T cells T1D T1D_7 chip0514_200242 PBMC +12177 CAEVGSYIPTF TRAV12-1*01 TRAJ6*01 CAPSHDKEGAAGELFF TRBV24-1*01 TRBJ2-2*01 HLA-A*02:01 B2M MHCI LLSLFSLWL ZNT8 HomoSapiens PMID:34811538 tetramer-sort yes amplicon-seq Naive T cells T1D T1D_8 chip0514_109783 PBMC +12178 CAVNGTDKLIF TRAV8-1*01 TRAJ34*01 CASSLSVSEFYNEQFF TRBV27*01 TRBJ2-1*01 HLA-A*02:01 B2M MHCI YVLDHLIVV BRLF1 EBV PMID:34811538 tetramer-sort yes amplicon-seq effector memory T cells T1D T1D_7 chip0514_804156 PBMC +12179 CAVNGGGGSQGNLIF TRAV12-2*01 TRAJ42*01 CASSSADSLYEQYF TRBV12-3*01,TRBV12-4*01 TRBJ2-7*01 HLA-A*02:01 B2M MHCI GILGFVFTL M1 InfluenzaA PMID:34811538 tetramer-sort yes amplicon-seq transitional T cells between effector and memory populations T1D T1D_7 chip0514_720021 PBMC +12180 CSATDSTYNEQFF TRBV20-1*01 TRBJ2-1*01 HLA-A*02:01 B2M MHCI YVLDHLIVV BRLF1 EBV PMID:34811538 tetramer-sort yes amplicon-seq effector T cells T1D T1D_7 chip0514_494323 PBMC +12181 CVVRNPGGFKTIF TRAV12-1*01 TRAJ9*01 CASSSEGGVGRNEQFF TRBV13*01 TRBJ2-1*01 HLA-A*02:01 B2M MHCI FMYSDFHFI PA InfluenzaA PMID:34811538 tetramer-sort yes amplicon-seq Naive T cells T1D T1D_7 chip0514_604303 PBMC +12182 CAFMTNNDMRF TRAV38-1*01 TRAJ43*01 HLA-A*02:01 B2M MHCI KLVALGINNV POL HCV PMID:34811538 tetramer-sort yes amplicon-seq Naive T cells T1D T1D_7 chip0514_289198 PBMC +12183 CASSFFSGSIETQYF TRBV28*01 TRBJ2-5*01 HLA-A*02:01 B2M MHCI ALGIGILTV MART1 HomoSapiens PMID:34811538 tetramer-sort yes amplicon-seq transitional T cells between effector and memory populations T1D T1D_7 chip0514_20232 PBMC +12184 CLVGDIEcg??gtSARQLTF TRAV4*01 TRAJ22*01 CASSSSQGAGELFF TRBV27*01 TRBJ2-2*01 HLA-A*02:01 B2M MHCI GILGFVFTL M1 InfluenzaA PMID:34811538 tetramer-sort yes amplicon-seq Naive T cells T1D T1D_7 chip0514_2747 PBMC +12185 CAMSLSNFGNEKLTF TRAV12-3*01 TRAJ48*01,TRAJ44*01 CASSLAWQGARDEQFF TRBV5-5*01 TRBJ2-1*01 HLA-A*02:01 B2M MHCI LLAGIGTVPI PGT HomoSapiens PMID:34811538 tetramer-sort yes amplicon-seq Naive T cells T1D T1D_8 chip0514_707938 PBMC +12186 NAGNNRKLIW TRAV27*01 TRAJ38*01 HLA-A*02:01 B2M MHCI LLQEYNWEL GAD65 HomoSapiens PMID:34811538 tetramer-sort yes amplicon-seq Naive T cells T1D T1D_7 chip0514_558305 PBMC +12187 CAVKDTDKLIF TRAV8-1*01 TRAJ34*01 HLA-A*02:01 B2M MHCI YVLDHLIVV BRLF1 EBV PMID:34811538 tetramer-sort yes amplicon-seq effector memory T cells T1D T1D_7 chip0514_15322 PBMC +12188 CAVANARLMF TRAV12-2*01 TRAJ31*01 CASRGARGMAGELFF TRBV28*01 TRBJ2-2*01 HLA-A*02:01 B2M MHCI LLAGIGTVPI PGT HomoSapiens PMID:34811538 tetramer-sort yes amplicon-seq Naive T cells T1D T1D_7 chip0514_114695 PBMC +12189 RGADIRcc?NAGESSV TRAV34*01 TRAJ27*01 CASSQNIAGGPPDTQYL TRBV4-3*01 TRBJ2-3*01 HLA-A*02:01 B2M MHCI LLAGIGTVPI PGT HomoSapiens PMID:34811538 tetramer-sort yes amplicon-seq Naive T cells T1D T1D_7 chip0514_515788 PBMC +12190 CVVPRGGGSYIPTF TRAV12-1*01 TRAJ6*01 HLA-A*02:01 B2M MHCI YLQQNWWTL LMP1 EBV PMID:34811538 tetramer-sort yes amplicon-seq central memory T cells T1D T1D_7 chip0514_715540 PBMC +12193 CASSEVGTGSHEQYF TRBV2*01 TRBJ2-7*01 HLA-A*02:01 B2M MHCI LLAGIGTVPI PGT HomoSapiens PMID:34811538 tetramer-sort yes amplicon-seq Naive T cells T1D T1D_7 chip0514_635504 PBMC +12194 CAESGSNDYKLSF TRAV5*01 TRAJ20*01 HLA-A*02:01 B2M MHCI VMNILLQYVV GAD65 HomoSapiens PMID:34811538 tetramer-sort yes amplicon-seq Naive T cells T1D T1D_8 chip0514_242549 PBMC +12195 CAVTDFSGNTPLVF TRAV41*01 TRAJ29*01 CASSGQAYHEQYF TRBV2*01 TRBJ2-7*01 HLA-A*02:01 B2M MHCI VMNILLQYV GAD65 HomoSapiens PMID:34811538 tetramer-sort yes amplicon-seq Naive T cells T1D T1D_7 chip0514_256965 PBMC +12196 CAFDSNYQLIW TRAV38-1*01 TRAJ33*01 CASSFRLAGGLSTDTQYF TRBV12-3*01,TRBV12-4*01 TRBJ2-3*01 HLA-A*02:01 B2M MHCI RGPGRAFVTI GP160 HIV-1 PMID:34811538 tetramer-sort yes amplicon-seq Naive T cells T1D T1D_7 chip0514_200687 PBMC +12197 CASSFGTSYEQYF TRBV7-9*01 TRBJ2-7*01 HLA-A*02:01 B2M MHCI ALGIGILTV MART1 HomoSapiens PMID:34811538 tetramer-sort yes amplicon-seq Naive T cells T1D T1D_7 chip0514_786768 PBMC +12198 CAGAGGGGSGGNLIF TRAV27*01 TRAJ42*01 CASSSRASYEQYF TRBV19*01 TRBJ2-7*01 HLA-A*02:01 B2M MHCI GILGFVFTL M1 InfluenzaA PMID:34811538 tetramer-sort yes amplicon-seq transitional T cells between effector and memory populations T1D T1D_8 chip0514_254777 PBMC +12199 CAVTSYGKLTF TRAV12-2*01 TRAJ52*01 HLA-A*02:01 B2M MHCI LLAGIGTVPI PGT HomoSapiens PMID:34811538 tetramer-sort yes amplicon-seq Naive T cells T1D T1D_7 chip0514_495625 PBMC +12200 CAMSASNFGNEKLTF TRAV12-3*01 TRAJ48*01 CASSLGRGILYGYTF TRBV7-2*01 TRBJ1-2*01 HLA-A*02:01 B2M MHCI LLAGIGTVPI PGT HomoSapiens PMID:34811538 tetramer-sort yes amplicon-seq Naive T cells T1D T1D_7 chip0514_380905 PBMC +12201 CAAEFRCNMLTF TRAV8-3*01 TRAJ39*01 CASSPPKSTDTQYF TRBV18*01 TRBJ2-3*01 HLA-A*02:01 B2M MHCI IQATVMIIV ZNT8 HomoSapiens PMID:34811538 tetramer-sort yes amplicon-seq Naive T cells T1D T1D_7 chip0514_706458 PBMC +12202 CASSFVDRYQETQYF TRBV12-3*01,TRBV12-4*01 TRBJ2-5*01 HLA-A*02:01 B2M MHCI LLAGIGTVPI PGT HomoSapiens PMID:34811538 tetramer-sort yes amplicon-seq Naive T cells T1D T1D_7 chip0514_640613 PBMC +12203 CAMGLSNFGNEKLTF TRAV12-3*01 TRAJ48*01 CASSSPDRGYTDTQYF TRBV28*01 TRBJ2-3*01 HLA-A*02:01 B2M MHCI LLAGIGTVPI PGT HomoSapiens PMID:34811538 tetramer-sort yes amplicon-seq Naive T cells T1D T1D_7 chip0514_57610 PBMC +12204 CAMSISNFGNEKLTF TRAV12-3*01 TRAJ48*01 CASSQEGGTDTGELFF TRBV4-1*01 TRBJ2-2*01 HLA-A*02:01 B2M MHCI LLAGIGTVPI PGT HomoSapiens PMID:34811538 tetramer-sort yes amplicon-seq Naive T cells T1D T1D_7 chip0514_584599 PBMC +12205 CAVSSGYSTLTF TRAV8-1*01 TRAJ11*01 CASSSLSGSGQPQHF TRBV28*01 TRBJ1-5*01 HLA-A*02:01 B2M MHCI YVLDHLIVV BRLF1 EBV PMID:34811538 tetramer-sort yes amplicon-seq effector T cells T1D T1D_7 chip0514_536411 PBMC +12206 CAGWGMVg?tATNKLVF TRAV25*01 TRAJ32*01 HLA-A*02:01 B2M MHCI ALGIGILTV MART1 HomoSapiens PMID:34811538 tetramer-sort yes amplicon-seq Naive T cells T1D T1D_7 chip0514_113126 PBMC +12207 CASSTRSGSEQYF TRBV19*01 TRBJ2-7*01 HLA-A*02:01 B2M MHCI GILGFVFTL M1 InfluenzaA PMID:34811538 tetramer-sort yes amplicon-seq transitional T cells between effector and memory populations T1D T1D_7 chip0514_641727 PBMC +12209 CAMSGSNFGNEKLTF TRAV12-3*01 TRAJ48*01 CASSQSGGATDTQYF TRBV3-1*01 TRBJ2-3*01 HLA-A*02:01 B2M MHCI LLAGIGTVPI PGT HomoSapiens PMID:34811538 tetramer-sort yes amplicon-seq Naive T cells T1D T1D_7 chip0514_23839 PBMC +12211 CASSQVLADPTDTQYF TRBV3-1*01 TRBJ2-3*01 HLA-A*02:01 B2M MHCI LLAGIGTVPI PGT HomoSapiens PMID:34811538 tetramer-sort yes amplicon-seq Naive T cells T1D T1D_7 chip0514_630703 PBMC +12212 CSVEFMEAVASDTQYF TRBV29-1*01 TRBJ2-3*01 HLA-A*02:01 B2M MHCI NLFLFLFAV IGRP HomoSapiens PMID:34811538 tetramer-sort yes amplicon-seq Naive T cells T1D T1D_7 chip0514_520333 PBMC +12213 CASSLGTSGQNTGELFF TRBV13*01 TRBJ2-2*01 HLA-A*02:01 B2M MHCI LLAGIGTVPI PGT HomoSapiens PMID:34811538 tetramer-sort yes amplicon-seq Naive T cells T1D T1D_7 chip0514_132851 PBMC +12214 CATDAADYKLSF TRAV17*01 TRAJ20*01 HLA-A*02:01 B2M MHCI RGPGRAFVTI GP160 HIV-1 PMID:34811538 tetramer-sort yes amplicon-seq Naive T cells T1D T1D_7 chip0514_869885 PBMC +12215 CAMSFSNFGNEKLTF TRAV12-3*01 TRAJ48*01 HLA-A*02:01 B2M MHCI LLAGIGTVPI PGT HomoSapiens PMID:34811538 tetramer-sort yes amplicon-seq Naive T cells T1D T1D_8 chip0514_524351 PBMC +12216 CAMSWGGGKLIF TRAV12-3*01 TRAJ23*01 CASSQVMGGAISGNTIYF TRBV4-1*01 TRBJ1-3*01 HLA-A*02:01 B2M MHCI LLAGIGTVPI PGT HomoSapiens PMID:34811538 tetramer-sort yes amplicon-seq Naive T cells T1D T1D_7 chip0514_13242 PBMC +12217 CSAPGGSYNEQFF TRBV29-1*01 TRBJ2-1*01 HLA-A*02:01 B2M MHCI FLWSVFWLI IGRP HomoSapiens PMID:34811538 tetramer-sort yes amplicon-seq Naive T cells T1D T1D_7 chip0514_495878 PBMC +12218 CALSNTGKLIF TRAV8-1*01 TRAJ37*01 HLA-A*02:01 B2M MHCI YVLDHLIVV BRLF1 EBV PMID:34811538 tetramer-sort yes amplicon-seq effector memory T cells T1D T1D_7 chip0514_495377 PBMC +12219 CVLGATNKLIF TRAV12-1*01 TRAJ32*01 HLA-A*02:01 B2M MHCI LLSLFSLWL ZNT8 HomoSapiens PMID:34811538 tetramer-sort yes amplicon-seq Naive T cells T1D T1D_7 chip0514_799514 PBMC +12220 CATDAAAYKLSF TRAV17*01 TRAJ20*01 CASLQEGEYTQYF TRBV12-3*01,TRBV12-4*01 TRBJ2-3*01 HLA-A*02:01 B2M MHCI RGPGRAFVTI GP160 HIV-1 PMID:34811538 tetramer-sort yes amplicon-seq Naive T cells T1D T1D_7 chip0514_347398 PBMC +12221 CAASDTYNDYKLSF TRAV29/DV5*01 TRAJ20*01 CASSLTSSREQETQYF TRBV13*01 TRBJ2-5*01 HLA-A*02:01 B2M MHCI ALWMRLLPL PREINS HomoSapiens PMID:34811538 tetramer-sort yes amplicon-seq Naive T cells T1D T1D_7 chip0514_750389 PBMC +12222 CAVREIANSGYALNF TRAV3*01 TRAJ41*01 CASSLGQGAGNEQFF TRBV13*01 TRBJ2-1*01 HLA-A*02:01 B2M MHCI LAVDGVLSV ZNT8 HomoSapiens PMID:34811538 tetramer-sort yes amplicon-seq Naive T cells T1D T1D_7 chip0514_778772 PBMC +12224 CASRPITGELFF TRBV7-6*01 TRBJ2-2*01 HLA-A*02:01 B2M MHCI LLAGIGTVPI PGT HomoSapiens PMID:34811538 tetramer-sort yes amplicon-seq Naive T cells T1D T1D_7 chip0514_434178 PBMC +12225 CASSSLSGSGQPQHF TRBV28*01 TRBJ1-5*01 HLA-A*02:01 B2M MHCI YVLDHLIVV BRLF1 EBV PMID:34811538 tetramer-sort yes amplicon-seq effector memory T cells T1D T1D_7 chip0514_741722 PBMC +12226 CAVFSSSNTGKLIF TRAV12-1*01 TRAJ37*01 HLA-A*02:01 B2M MHCI SISVLISAL ZNT8 HomoSapiens PMID:34811538 tetramer-sort yes amplicon-seq Naive T cells T1D T1D_7 chip0514_670820 PBMC +12227 CVVADYKLSF TRAV12-1*01 TRAJ20*01 CAISEVEETGLNEQYF TRBV10-3*01 TRBJ2-7*01 HLA-A*02:01 B2M MHCI LLAGIGTVPI PGT HomoSapiens PMID:34811538 tetramer-sort yes amplicon-seq Naive T cells T1D T1D_7 chip0514_606762 PBMC +12228 CATDGVSGYSTLTF TRAV17*01 TRAJ11*01 CASSSQGGNCGYTF TRBV6-5*01 TRBJ1-2*01 HLA-A*02:01 B2M MHCI FLYALALLL LMP2 EBV PMID:34811538 tetramer-sort yes amplicon-seq effector memory T cells T1D T1D_7 chip0514_797064 PBMC +12229 CAVDAKLTF TRAV12-2*01 TRAJ48*01 CASSYGGGDTQYF TRBV6-2*01,TRBV6-3*01 TRBJ2-3*01 HLA-A*02:01 B2M MHCI ALAGIGILTV MART1 HomoSapiens PMID:34811538 tetramer-sort yes amplicon-seq Naive T cells T1D T1D_7 chip0514_508562 PBMC +12230 SAENY??tYLFSF TRAV13-2*01 TRAJ49*01 CASRIRETQYF TRBV2*01 TRBJ2-5*01 HLA-A*02:01 B2M MHCI VIYQYMDDL POL HIV-1 PMID:34811538 tetramer-sort yes amplicon-seq Naive T cells T1D T1D_8 chip0514_633249 PBMC +12231 CAVFDNYQLIW TRAV12-1*01 TRAJ33*01 HLA-A*02:01 B2M MHCI LLAGIGTVPI PGT HomoSapiens PMID:34811538 tetramer-sort yes amplicon-seq Naive T cells T1D T1D_8 chip0514_685906 PBMC +12232 CVGYQGGKLIF TRAV12-1*01 TRAJ23*01 CASSSDDGVRTQYF TRBV6-5*01 TRBJ2-5*01 HLA-A*02:01 B2M MHCI LLAGIGTVPI PGT HomoSapiens PMID:34811538 tetramer-sort yes amplicon-seq Naive T cells T1D T1D_7 chip0514_612695 PBMC +12233 CAVLMDSNYQLIW TRAV21*01 TRAJ33*01 CASSGDGMNTEAFF TRBV10-2*01 TRBJ1-1*01 HLA-A*02:01 B2M MHCI CLGGLLTMV LMP2A EBV PMID:34811538 tetramer-sort yes amplicon-seq effector memory T cells T1D T1D_7 chip0514_669749 PBMC +12234 CATTGTFVYSTVNF TRAV17*01 TRAJ11*01 CASSYQGGNEQFF TRBV6-5*01 TRBJ2-1*01 HLA-A*02:01 B2M MHCI FLYALALLL LMP2 EBV PMID:34811538 tetramer-sort yes amplicon-seq central memory T cells T1D T1D_8 chip0514_670060 PBMC +12235 CASSPNSFEQFF TRBV12-3*01,TRBV12-4*01 TRBJ2-1*01 HLA-A*02:01 B2M MHCI ALWMRLLPL PREINS HomoSapiens PMID:34811538 tetramer-sort yes amplicon-seq Naive T cells T1D T1D_7 chip0514_83248 PBMC +12236 CAVLMDSNYQLIW TRAV21*01,TRAV12-3*01 TRAJ33*01 CASSDDGMNTEAFF TRBV10-2*01 TRBJ1-1*01 HLA-A*02:01 B2M MHCI CLGGLLTMV LMP2A EBV PMID:34811538 tetramer-sort yes amplicon-seq effector memory T cells T1D T1D_8 chip0514_57897 PBMC +12237 CATDGLSNFGNEKLTF TRAV17*01 TRAJ48*01 CASSFGQQETQYF TRBV12-3*01,TRBV12-4*01 TRBJ2-5*01 HLA-A*02:01 B2M MHCI GLCTLVAML BLMF1 EBV PMID:34811538 tetramer-sort yes amplicon-seq effector T cells T1D T1D_7 chip0514_602530 PBMC +12238 CANSFTGAg?gGVYNEQFF TRBV7-3*01 TRBJ2-1*01 HLA-A*02:01 B2M MHCI LLSLFSLWL ZNT8 HomoSapiens PMID:34811538 tetramer-sort yes amplicon-seq Naive T cells T1D T1D_7 chip0514_243460 PBMC +12239 CAGGGDGGSQGNLIF TRAV21*01 TRAJ42*01 HLA-A*02:01 B2M MHCI GILGFVFTL M1 InfluenzaA PMID:34811538 tetramer-sort yes amplicon-seq effector T cells T1D T1D_8 chip0514_379009 PBMC +12240 CAPRTNAGKSTF TRAV13-2*01 TRAJ27*01 CSASPGTSGTYEQYF TRBV20-1*01 TRBJ2-7*01 HLA-A*02:01 B2M MHCI LLAGIGTVPI PGT HomoSapiens PMID:34811538 tetramer-sort yes amplicon-seq Naive T cells T1D T1D_8 chip0514_715148 PBMC +12241 YAVKGSGDSWGKLQF TRAV12-2*01 TRAJ24*01 HLA-A*02:01 B2M MHCI VVTGVLVYL ZNT8 HomoSapiens PMID:34811538 tetramer-sort yes amplicon-seq effector memory T cells T1D T1D_7 chip0514_489866 PBMC +12242 CAMSASNFGNEKLTF TRAV12-3*01 TRAJ48*01 CASSPRTGVSNTGELFF TRBV18*01 TRBJ2-2*01 HLA-A*02:01 B2M MHCI LLAGIGTVPI PGT HomoSapiens PMID:34811538 tetramer-sort yes amplicon-seq Naive T cells T1D T1D_7 chip0514_874359 PBMC +12244 CAMTLSNFGNEKLTF TRAV12-3*01 TRAJ48*01 CASSFAQGKSLSDEQYF TRBV28*01 TRBJ2-7*01 HLA-A*02:01 B2M MHCI LLAGIGTVPI PGT HomoSapiens PMID:34811538 tetramer-sort yes amplicon-seq Naive T cells T1D T1D_8 chip0514_149278 PBMC +12245 CAMRDTGGFKTIF TRAV14/DV4*01 TRAJ9*01 CASSYSEGSYNEQFF TRBV6-5*01 TRBJ2-1*01 HLA-A*02:01 B2M MHCI RGPGRAFVTI GP160 HIV-1 PMID:34811538 tetramer-sort yes amplicon-seq Naive T cells T1D T1D_7 chip0514_130895 PBMC +12246 CVVSRGYQKVTF TRAV12-1*01 TRAJ13*01 CASSQVSGGVETQYF TRBV14*01 TRBJ2-5*01 HLA-A*02:01 B2M MHCI LLAGIGTVPI PGT HomoSapiens PMID:34811538 tetramer-sort yes amplicon-seq Naive T cells T1D T1D_7 chip0514_857342 PBMC +12247 CATVPSNTGKLIF TRAV13-1*01 TRAJ37*01 LCQ*SPga??gcGEPQYF TRBV19*01 TRBJ2-5*01 HLA-A*02:01 B2M MHCI GILGFVFTL M1 InfluenzaA PMID:34811538 tetramer-sort yes amplicon-seq transitional T cells between effector and memory populations T1D T1D_7 chip0514_800670 PBMC +12248 CAMSDYQLIW TRAV12-3*01 TRAJ33*01 CASSRWTTGGNEQFF TRBV7-2*01 TRBJ2-1*01 HLA-A*02:01 B2M MHCI LLAGIGTVPI PGT HomoSapiens PMID:34811538 tetramer-sort yes amplicon-seq Naive T cells T1D T1D_7 chip0514_36205 PBMC +12249 CAMTDTDKLIF TRAV8-1*01 TRAJ34*01 HLA-A*02:01 B2M MHCI YVLDHLIVV BRLF1 EBV PMID:34811538 tetramer-sort yes amplicon-seq effector T cells T1D T1D_7 chip0514_322165 PBMC +12250 CAVVGKLSL TRAV12-2*01 TRAJ20*01 HLA-A*02:01 B2M MHCI ALAGIGILTV MART1 HomoSapiens PMID:34811538 tetramer-sort yes amplicon-seq Naive T cells T1D T1D_7 chip0514_522203 PBMC +12251 CASRSNGGPSADTQYF TRBV19*01 TRBJ2-3*01 HLA-A*02:01 B2M MHCI LLAGIGTVPI PGT HomoSapiens PMID:34811538 tetramer-sort yes amplicon-seq Naive T cells T1D T1D_7 chip0514_439079 PBMC +12252 CAMSRSNFGNEKLTF TRAV12-3*01 TRAJ48*01 CASSFSGTGAHNEQFF TRBV5-6*01 TRBJ2-1*01 HLA-A*02:01 B2M MHCI LLAGIGTVPI PGT HomoSapiens PMID:34811538 tetramer-sort yes amplicon-seq Naive T cells T1D T1D_7 chip0514_428055 PBMC +12254 CASSVWAGHNEQFF TRBV6-4*01 TRBJ2-1*01 HLA-A*02:01 B2M MHCI GLCTLVAML BLMF1 EBV PMID:34811538 tetramer-sort yes amplicon-seq effector memory T cells T1D T1D_7 chip0514_584450 PBMC +12255 CASSFNVGTVPYEQYF TRBV27*01 TRBJ2-7*01 HLA-A*02:01 B2M MHCI YVLDHLIVV BRLF1 EBV PMID:34811538 tetramer-sort yes amplicon-seq transitional T cells between effector and memory populations T1D T1D_7 chip0514_388442 PBMC +12257 CSMGISNVGPEPLTF TRAV12-3*01 TRAJ48*01 CASSQGDVSHGTQYF TRBV14*01 TRBJ2-3*01 HLA-A*02:01 B2M MHCI LLAGIGTVPI PGT HomoSapiens PMID:34811538 tetramer-sort yes amplicon-seq Naive T cells T1D T1D_7 chip0514_228126 PBMC +12258 CASSSLSGSGQPQHF TRBV28*01 TRBJ1-5*01 HLA-A*02:01 B2M MHCI YVLDHLIVV BRLF1 EBV PMID:34811538 tetramer-sort yes amplicon-seq effector memory T cells T1D T1D_7 chip0514_170917 PBMC +12259 CAVKGTDKLIF TRAV8-1*01 TRAJ34*01 CASSLSVSEFYNEQFF TRBV27*01 TRBJ2-1*01 HLA-A*02:01 B2M MHCI YVLDHLIVV BRLF1 EBV PMID:34811538 tetramer-sort yes amplicon-seq effector T cells T1D T1D_7 chip0514_534797 PBMC +12260 CAMSAMNRDDKIIF TRAV12-3*01 TRAJ30*01 HLA-A*02:01 B2M MHCI VVTGVLVYL ZNT8 HomoSapiens PMID:34811538 tetramer-sort yes amplicon-seq Naive T cells T1D T1D_7 chip0514_295445 PBMC +12261 CASSFNVGTVPYEQYF TRBV27*01 TRBJ2-7*01 HLA-A*02:01 B2M MHCI YVLDHLIVV BRLF1 EBV PMID:34811538 tetramer-sort yes amplicon-seq effector T cells T1D T1D_7 chip0514_156114 PBMC +12263 CALSVSADSGSTLGRLYF TRAV9-2*01 TRAJ18*01 CASSIMNTEAFF TRBV19*01 TRBJ1-1*01 HLA-A*02:01 B2M MHCI VVTGVLVYL ZNT8 HomoSapiens PMID:34811538 tetramer-sort yes amplicon-seq Naive T cells T1D T1D_7 chip0514_264834 PBMC +12264 YAVQAE??cDYKLRF TRAV20*01 TRAJ20*01 CASSDQGGGYGYTF TRBV6-1*01 TRBJ1-2*01 HLA-A*02:01 B2M MHCI FLYALALLL LMP2 EBV PMID:34811538 tetramer-sort yes amplicon-seq central memory T cells T1D T1D_7 chip0514_330841 PBMC +12266 CAYRSPPSSEQLVF TRAV38-2/DV8*01 TRAJ57*01 CASRTGGYEQYF TRBV5-1*01 TRBJ2-7*01 HLA-A*02:01 B2M MHCI CLGGLLTMV LMP2A EBV PMID:34811538 tetramer-sort yes amplicon-seq Naive T cells T1D T1D_7 chip0514_329665 PBMC +12267 CASSFNVGTVPYEQYF TRBV27*01 TRBJ2-7*01 HLA-A*02:01 B2M MHCI YVLDHLIVV BRLF1 EBV PMID:34811538 tetramer-sort yes amplicon-seq effector memory T cells T1D T1D_7 chip0514_308202 PBMC +12268 CALRGRHSGGYQKVTF TRAV19*01 TRAJ13*01 CASSRLGGAPGGYTF TRBV6-1*01 TRBJ1-2*01 HLA-A*02:01 B2M MHCI FLYALALLL LMP2 EBV PMID:34811538 tetramer-sort yes amplicon-seq effector memory T cells T1D T1D_8 chip0514_666046 PBMC +12269 CAEKSGASGILIF TRAV5*01 TRAJ37*01 CSVGTGGTNEKLFF TRBV29-1*01 TRBJ1-4*01 HLA-A*02:01 B2M MHCI GLCTLVAML BLMF1 EBV PMID:34811538 tetramer-sort yes amplicon-seq effector T cells T1D T1D_8 chip0514_414895 PBMC +12270 CAVKDTDKLIF TRAV8-1*01 TRAJ34*01 CASSPLLGSNQPQHF TRBV19*01 TRBJ1-5*01 HLA-A*02:01 B2M MHCI YVLDHLIVV BRLF1 EBV PMID:34811538 tetramer-sort yes amplicon-seq effector memory T cells T1D T1D_7 chip0514_48207 PBMC +12272 CAMSMSNFGNEKLTF TRAV12-3*01 TRAJ48*01 CSPGQGALGYYNEQFF TRBV20-1*01 TRBJ2-1*01 HLA-A*02:01 B2M MHCI LLAGIGTVPI PGT HomoSapiens PMID:34811538 tetramer-sort yes amplicon-seq Naive T cells T1D T1D_7 chip0514_79604 PBMC +12273 CAMSISNFGNEKLTF TRAV12-3*01 TRAJ48*01 HLA-A*02:01 B2M MHCI LLAGIGTVPI PGT HomoSapiens PMID:34811538 tetramer-sort yes amplicon-seq Naive T cells T1D T1D_7 chip0514_28409 PBMC +12274 CASSTLAGTYNEQFF TRBV19*01 TRBJ2-1*01 HLA-A*02:01 B2M MHCI GILGFVFTL M1 InfluenzaA PMID:34811538 tetramer-sort yes amplicon-seq Naive T cells T1D T1D_7 chip0514_328340 PBMC +12275 CALLISDGQKLLF TRAV9-2*01 TRAJ16*01 CASSSVRGKGYTF TRBV19*01 TRBJ1-2*01 HLA-A*02:01 B2M MHCI LLAGIGTVPI PGT HomoSapiens PMID:34811538 tetramer-sort yes amplicon-seq Naive T cells T1D T1D_7 chip0514_235390 PBMC +12276 CASSMRSAYEQYF TRBV19*01 TRBJ2-7*01 HLA-A*02:01 B2M MHCI GILGFVFTL M1 InfluenzaA PMID:34811538 tetramer-sort yes amplicon-seq transitional T cells between effector and memory populations T1D T1D_7 chip0514_565285 PBMC +12278 CAADGFQKLVF TRAV12-1*01 TRAJ8*01 YASSLTGSGYTF TRBV27*01 TRBJ1-2*01 HLA-A*02:01 B2M MHCI ALAGIGILTV MART1 HomoSapiens PMID:34811538 tetramer-sort yes amplicon-seq Naive T cells T1D T1D_8 chip0514_303870 PBMC +12279 CSATDSTYNEQFF TRBV20-1*01 TRBJ2-1*01 HLA-A*02:01 B2M MHCI YVLDHLIVV BRLF1 EBV PMID:34811538 tetramer-sort yes amplicon-seq effector memory T cells T1D T1D_7 chip0514_250381 PBMC +12280 CDTEGGSGYSTLTF TRAV17*01 TRAJ11*01 CASSVQGGSTYGYTF TRBV6-1*01 TRBJ1-2*01 HLA-A*02:01 B2M MHCI FLYALALLL LMP2 EBV PMID:34811538 tetramer-sort yes amplicon-seq effector memory T cells T1D T1D_7 chip0514_875623 PBMC +12281 CASSEAGMSTEAFF TRBV10-2*01 TRBJ1-1*01 HLA-A*02:01 B2M MHCI CLGGLLTMV LMP2A EBV PMID:34811538 tetramer-sort yes amplicon-seq effector memory T cells T1D T1D_7 chip0514_800601 PBMC +12282 CAMSRSNFGNEKLTF TRAV12-3*01 TRAJ48*01 CASSRGQATSSYNEQFF TRBV11-3*01 TRBJ2-1*01 HLA-A*02:01 B2M MHCI LLAGIGTVPI PGT HomoSapiens PMID:34811538 tetramer-sort yes amplicon-seq Naive T cells T1D T1D_7 chip0514_202169 PBMC +12284 CASSGDGMNTEAFF TRBV10-2*01 TRBJ1-1*01 HLA-A*02:01 B2M MHCI CLGGLLTMV LMP2A EBV PMID:34811538 tetramer-sort yes amplicon-seq effector memory T cells T1D T1D_7 chip0514_596146 PBMC +12285 CAVNDTDKLIF TRAV8-1*01 TRAJ34*01 HLA-A*02:01 B2M MHCI YVLDHLIVV BRLF1 EBV PMID:34811538 tetramer-sort yes amplicon-seq effector T cells tet_neg chip0514_664403 PBMC +12286 CAMRERDSHWQLVW TRAV14/DV4*01 TRAJ33*01 CASRAEAYLNTG*LSC TRBV6-1*01 TRBJ2-2*01 HLA-A*02:01 B2M MHCI GLCTLVAML BLMF1 EBV PMID:34811538 tetramer-sort yes amplicon-seq central memory T cells T1D T1D_7 chip0514_299280 PBMC +12287 CAMSASNFGNEKLTF TRAV12-3*01 TRAJ48*01 CASSALTGANEKLFF TRBV28*01 TRBJ1-4*01 HLA-A*02:01 B2M MHCI LLAGIGTVPI PGT HomoSapiens PMID:34811538 tetramer-sort yes amplicon-seq Naive T cells T1D T1D_7 chip0514_416304 PBMC +12288 CASSRGLADSYEQYF TRBV5-4*01 TRBJ2-7*01 HLA-A*02:01 B2M MHCI LLAGIGTVPI PGT HomoSapiens PMID:34811538 tetramer-sort yes amplicon-seq Naive T cells T1D T1D_8 chip0514_1613 PBMC +12289 CASAGLAGGGELFF TRBV19*01 TRBJ2-2*01 HLA-A*02:01 B2M MHCI LLSLFSLWL ZNT8 HomoSapiens PMID:34811538 tetramer-sort yes amplicon-seq Naive T cells T1D T1D_7 chip0514_630576 PBMC +12290 CAASGGSNYKLTF TRAV29/DV5*01 TRAJ53*01 CSAVGGNGNEQFF TRBV20-1*01 TRBJ2-1*01 HLA-A*02:01 B2M MHCI YVLDHLIVV BRLF1 EBV PMID:34811538 tetramer-sort yes amplicon-seq transitional T cells between effector and memory populations T1D T1D_7 chip0514_514416 PBMC +12291 CAKGKPc?cYDKVIF TRAV5*01 TRAJ50*01 HLA-A*02:01 B2M MHCI LLAGIGTVPI PGT HomoSapiens PMID:34811538 tetramer-sort yes amplicon-seq Naive T cells T1D T1D_7 chip0514_706278 PBMC +12292 CASSFPETGENNEQFF TRBV27*01 TRBJ2-1*01 HLA-A*02:01 B2M MHCI LLAGIGTVPI PGT HomoSapiens PMID:34811538 tetramer-sort yes amplicon-seq Naive T cells T1D T1D_7 chip0514_335522 PBMC +12293 CAVKDTDKLIF TRAV8-1*01 TRAJ34*01 CAGAEPGVNYGYTF TRBV2*01 TRBJ1-2*01 HLA-A*02:01 B2M MHCI YVLDHLIVV BRLF1 EBV PMID:34811538 tetramer-sort yes amplicon-seq effector T cells T1D T1D_7 chip0514_770801 PBMC +12294 CAAHKTSGSRLTF TRAV41*01 TRAJ10*01 CSARDEGYEQYF TRBV20-1*01 TRBJ2-7*01 HLA-A*02:01 B2M MHCI GIIYIIYKL P3A CoxsackievirusB PMID:34811538 tetramer-sort yes amplicon-seq Naive T cells T1D T1D_7 chip0514_212777 PBMC +12295 CASSLELGDRGESGNTIYF TRBV5-1*01 TRBJ1-3*01 HLA-A*02:01 B2M MHCI LLAGIGTVPI PGT HomoSapiens PMID:34811538 tetramer-sort yes amplicon-seq Naive T cells T1D T1D_7 chip0514_550412 PBMC +12296 CASSEDGMNTEAFF TRBV10-2*01 TRBJ1-1*01 HLA-A*02:01 B2M MHCI CLGGLLTMV LMP2A EBV PMID:34811538 tetramer-sort yes amplicon-seq effector memory T cells T1D T1D_7 chip0514_309256 PBMC +12297 CGARSLTEGGTEAFF TRAV34*01 TRAJ40*01 CGARSITGGGTEAFF TRBV28*01 TRBJ1-1*01 HLA-A*02:01 B2M MHCI YVLDHLIVV BRLF1 EBV PMID:34811538 tetramer-sort yes amplicon-seq effector T cells T1D T1D_7 chip0514_436662 PBMC +12298 CASSLLQGAAETQYF TRBV28*01 TRBJ2-5*01 HLA-A*02:01 B2M MHCI YVLDHLIVV BRLF1 EBV PMID:34811538 tetramer-sort yes amplicon-seq effector T cells T1D T1D_7 chip0514_508193 PBMC +12299 CAVLQQ??cASLVFF TRAV12-2*01 TRAJ3*01 CASSRGQGLIQVDYEQYF TRBV3-1*01 TRBJ2-7*01 HLA-A*02:01 B2M MHCI ALAGIGILTV MART1 HomoSapiens PMID:34811538 tetramer-sort yes amplicon-seq Naive T cells T1D T1D_7 chip0514_464589 PBMC +12300 CASSYKTNTGELFF TRBV6-5*01 TRBJ2-2*01 HLA-A*02:01 B2M MHCI KLQVFLIVL IAPP HomoSapiens PMID:34811538 tetramer-sort yes amplicon-seq Naive T cells T1D T1D_7 chip0514_82916 PBMC +12301 FATSRNSGYSPLTI TRAV17*01 TRAJ11*01 CASSYQGGRGGYTF TRBV6-5*01 TRBJ1-2*01 HLA-A*02:01 B2M MHCI FLYALALLL LMP2 EBV PMID:34811538 tetramer-sort yes amplicon-seq effector T cells T1D T1D_7 chip0514_130481 PBMC +12302 CAVIGGSNYKLTF TRAV12-2*01 TRAJ53*01 CASSIALAGGEQFF TRBV19*01 TRBJ2-1*01 HLA-A*02:01 B2M MHCI LLAGIGTVPI PGT HomoSapiens PMID:34811538 tetramer-sort yes amplicon-seq effector memory T cells T1D T1D_8 chip0514_823526 PBMC +12303 CASRPSGLGTDTQYF TRBV6-2*01,TRBV6-3*01 TRBJ2-3*01 HLA-A*02:01 B2M MHCI LLAGIGTVPI PGT HomoSapiens PMID:34811538 tetramer-sort yes amplicon-seq Naive T cells T1D T1D_7 chip0514_185001 PBMC +12304 CATVGDSGYSNLTF TRAV17*01 TRAJ11*01 HLA-A*02:01 B2M MHCI FLYALALLL LMP2 EBV PMID:34811538 tetramer-sort yes amplicon-seq central memory T cells T1D T1D_7 chip0514_356207 PBMC +12305 CASSSHRQGLGEESEKLFF TRBV28*01 TRBJ1-4*01 HLA-A*02:01 B2M MHCI LLAGIGTVPI PGT HomoSapiens PMID:34811538 tetramer-sort yes amplicon-seq Naive T cells T1D T1D_7 chip0514_341849 PBMC +12306 CVVKDQg?aYSTLTF TRAV8-2*01 TRAJ11*01 CASSEDGMNTEAFF TRBV10-2*01 TRBJ1-1*01 HLA-A*02:01 B2M MHCI CLGGLLTMV LMP2A EBV PMID:34811538 tetramer-sort yes amplicon-seq effector memory T cells T1D T1D_7 chip0514_217865 PBMC +12307 CAMSTSNFGNEKLTF TRAV12-3*01 TRAJ48*01 CASSPFGGTYTDTQYF TRBV12-3*01,TRBV12-4*01 TRBJ2-3*01 HLA-A*02:01 B2M MHCI LLAGIGTVPI PGT HomoSapiens PMID:34811538 tetramer-sort yes amplicon-seq Naive T cells T1D T1D_7 chip0514_796781 PBMC +12308 CAMSDSNYQLIW TRAV12-3*01 TRAJ33*01 CAIKRDTDNIQYF TRBV10-3*01 TRBJ2-4*01 HLA-A*02:01 B2M MHCI VVTGVLVYL ZNT8 HomoSapiens PMID:34811538 tetramer-sort yes amplicon-seq transitional T cells between effector and memory populations T1D T1D_7 chip0514_607330 PBMC +12309 CAMSRSNFGNEKLTF TRAV12-3*01 TRAJ48*01 CSAYIQGKNSDTQYF TRBV20-1*01 TRBJ2-3*01 HLA-A*02:01 B2M MHCI LLAGIGTVPI PGT HomoSapiens PMID:34811538 tetramer-sort yes amplicon-seq Naive T cells T1D T1D_7 chip0514_168285 PBMC +12310 CATEGDSGYSTLTF TRAV17*01 TRAJ11*01 CASSPQGGGYGYTF TRBV6-1*01 TRBJ1-2*01 HLA-A*02:01 B2M MHCI FLYALALLL LMP2 EBV PMID:34811538 tetramer-sort yes amplicon-seq effector T cells T1D T1D_7 chip0514_403330 PBMC +12311 CAMSFSNFGNEKLTF TRAV12-3*01 TRAJ48*01 CASSPTATSGNTGELFF TRBV7-6*01 TRBJ2-2*01 HLA-A*02:01 B2M MHCI LLAGIGTVPI PGT HomoSapiens PMID:34811538 tetramer-sort yes amplicon-seq Naive T cells T1D T1D_7 chip0514_311509 PBMC +12312 CALLGSQGNLIF TRAV38-1*01 TRAJ42*01 HLA-A*02:01 B2M MHCI GIIYIIYKL P3A CoxsackievirusB PMID:34811538 tetramer-sort yes amplicon-seq Naive T cells T1D T1D_7 chip0514_218483 PBMC +12313 CASRPTLGSGSPLHF TRBV28*01 TRBJ1-6*01 HLA-A*02:01 B2M MHCI YVLDHLIVV BRLF1 EBV PMID:34811538 tetramer-sort yes amplicon-seq effector memory T cells T1D T1D_7 chip0514_207799 PBMC +12314 CAGRSNDYKLSF TRAV27*01 TRAJ20*01 HLA-A*02:01 B2M MHCI SISVLISAL ZNT8 HomoSapiens PMID:34811538 tetramer-sort yes amplicon-seq Naive T cells T1D T1D_7 chip0514_711719 PBMC +12315 CASSFNVGTVPYEQYF TRBV27*01 TRBJ2-7*01 HLA-A*02:01 B2M MHCI YVLDHLIVV BRLF1 EBV PMID:34811538 tetramer-sort yes amplicon-seq effector memory T cells T1D T1D_7 chip0514_443612 PBMC +12316 CAGEGNKLAF TRAV12-3*01 TRAJ47*01 HLA-A*02:01 B2M MHCI FLYALALLL LMP2 EBV PMID:34811538 tetramer-sort yes amplicon-seq central memory T cells T1D T1D_8 chip0514_62265 PBMC +12317 CAVIGGSNYKLTF TRAV12-2*01 TRAJ53*01 CASSIALAGGEQFF TRBV19*01 TRBJ2-1*01 HLA-A*02:01 B2M MHCI LLAGIGTVPI PGT HomoSapiens PMID:34811538 tetramer-sort yes amplicon-seq effector memory T cells T1D T1D_8 chip0514_401353 PBMC +12318 CAVTFLGGRHGNLIF TRAV8-4*01 TRAJ42*01 HLA-A*02:01 B2M MHCI GILGFVFTL M1 InfluenzaA PMID:34811538 tetramer-sort yes amplicon-seq transitional T cells between effector and memory populations T1D T1D_7 chip0514_316135 PBMC +12319 CASSEAGGLGMYSNQPQHF TRBV6-1*01 TRBJ1-5*01 HLA-A*02:01 B2M MHCI ALWGPDPAAA PREINS HomoSapiens PMID:34811538 tetramer-sort yes amplicon-seq Naive T cells tet_neg chip0514_569702 PBMC +12320 CVTGGADGLPF TRAV8-2*01 TRAJ45*01 CATSDFITDTQYF TRBV24-1*01 TRBJ2-3*01 HLA-A*02:01 B2M MHCI YVLDHLIVV BRLF1 EBV PMID:34811538 tetramer-sort yes amplicon-seq effector memory T cells T1D T1D_7 chip0514_589647 PBMC +12321 CASSLLAGGTDTQYF TRBV12-3*01,TRBV12-4*01 TRBJ2-3*01 HLA-A*02:01 B2M MHCI SLYNTVATLY GAG HIV-1 PMID:34811538 tetramer-sort yes amplicon-seq Naive T cells T1D T1D_7 chip0514_546305 PBMC +12322 CASIYNQGGGLIF TRAV38-1*01 TRAJ23*01 CASPSPSGVRADTQYF TRBV2*01 TRBJ2-3*01 HLA-A*02:01 B2M MHCI KLQVFLIVL IAPP HomoSapiens PMID:34811538 tetramer-sort yes amplicon-seq Naive T cells T1D T1D_8 chip0514_498307 PBMC +12323 CAVKDTDKLIF TRAV8-1*01 TRAJ34*01 HLA-A*02:01 B2M MHCI YVLDHLIVV BRLF1 EBV PMID:34811538 tetramer-sort yes amplicon-seq effector memory T cells T1D T1D_7 chip0514_487377 PBMC +12324 CAVMIDTPLVF TRAV12-2*01 TRAJ29*01 HLA-A*02:01 B2M MHCI ALGIGILTV MART1 HomoSapiens PMID:34811538 tetramer-sort yes amplicon-seq Naive T cells T1D T1D_7 chip0514_684094 PBMC +12325 CASSQGGSGSSDTQYF TRBV4-2*01 TRBJ2-3*01 HLA-A*02:01 B2M MHCI YVLDHLIVV BRLF1 EBV PMID:34811538 tetramer-sort yes amplicon-seq effector memory T cells T1D T1D_7 chip0514_842106 PBMC +12326 CAVNTGGFKTIF TRAV12-2*01 TRAJ9*01 CASSLTGGNEAFF TRBV12-3*01,TRBV12-4*01 TRBJ1-1*01 HLA-A*02:01 B2M MHCI ALAGIGILTV MART1 HomoSapiens PMID:34811538 tetramer-sort yes amplicon-seq Naive T cells T1D T1D_7 chip0514_324094 PBMC +12327 CATGSRTDATDTQYF TRBV28*01 TRBJ2-3*01 HLA-A*02:01 B2M MHCI RGPGRAFVTI GP160 HIV-1 PMID:34811538 tetramer-sort yes amplicon-seq Naive T cells T1D T1D_7 chip0514_738392 PBMC +12328 CAVVLSGGYQKVTF TRAV8-3*01 TRAJ13*01 CASSPSGSEQYF TRBV9*01 TRBJ2-7*01 HLA-A*02:01 B2M MHCI CLGGLLTMV LMP2A EBV PMID:34811538 tetramer-sort yes amplicon-seq Naive T cells T1D T1D_7 chip0514_535046 PBMC +12329 CSARRLLGGGQPQHF TRBV20-1*01 TRBJ1-5*01 HLA-A*02:01 B2M MHCI YVLDHLIVV BRLF1 EBV PMID:34811538 tetramer-sort yes amplicon-seq effector memory T cells T1D T1D_7 chip0514_532519 PBMC +12330 CAVKDTDKLIF TRAV8-1*01 TRAJ34*01 CSATDSTYNEQFF TRBV20-1*01 TRBJ2-1*01 HLA-A*02:01 B2M MHCI YVLDHLIVV BRLF1 EBV PMID:34811538 tetramer-sort yes amplicon-seq effector memory T cells T1D T1D_7 chip0514_726429 PBMC +12331 CAVINDYKLSF TRAV12-2*01 TRAJ20*01 CASSLEEQGGFNEKLFF TRBV7-6*01 TRBJ1-4*01 HLA-A*02:01 B2M MHCI YLLPRRGPRL POL HCV PMID:34811538 tetramer-sort yes amplicon-seq Naive T cells T1D T1D_7 chip0514_366128 PBMC +12333 CAGHSRNTGKLIF TRAV29/DV5*01 TRAJ37*01 CASSLGVGGSEQFF TRBV5-4*01 TRBJ2-1*01 HLA-A*02:01 B2M MHCI ALAGIGILTV MART1 HomoSapiens PMID:34811538 tetramer-sort yes amplicon-seq Naive T cells T1D T1D_7 chip0514_81878 PBMC +12336 CAPIGTSG*STLTC TRAV17*01 TRAJ11*01 HLA-A*02:01 B2M MHCI FLYALALLL LMP2 EBV PMID:34811538 tetramer-sort yes amplicon-seq central memory T cells T1D T1D_7 chip0514_518462 PBMC +12337 CAAGGGSYIPTF TRAV12-2*01 TRAJ6*01 HLA-A*02:01 B2M MHCI ALAGIGILTV MART1 HomoSapiens PMID:34811538 tetramer-sort yes amplicon-seq Naive T cells T1D T1D_7 chip0514_108051 PBMC +12338 CAMSSSNFGTAPLTF TRAV12-3*01 TRAJ48*01 HLA-A*02:01 B2M MHCI LLAGIGTVPI PGT HomoSapiens PMID:34811538 tetramer-sort yes amplicon-seq Naive T cells T1D T1D_8 chip0514_222766 PBMC +12339 CASSSFHIQGGYEQYF TRBV28*01 TRBJ2-7*01 HLA-A*02:01 B2M MHCI VLFGLGFAI IGRP HomoSapiens PMID:34811538 tetramer-sort yes amplicon-seq effector T cells T1D T1D_7 chip0514_75385 PBMC +12340 CAVLMDSNYQLIW TRAV21*01 TRAJ33*01 CASSEDGMNTEAFF TRBV10-2*01 TRBJ1-1*01 HLA-A*02:01 B2M MHCI CLGGLLTMV LMP2A EBV PMID:34811538 tetramer-sort yes amplicon-seq effector memory T cells T1D T1D_7 chip0514_739306 PBMC +12341 CASSEVDQYEQYF TRBV6-1*01 TRBJ2-7*01 HLA-A*02:01 B2M MHCI YVLDHLIVV BRLF1 EBV PMID:34811538 tetramer-sort yes amplicon-seq effector T cells T1D T1D_7 chip0514_546294 PBMC +12342 CVVNENFNKFYF TRAV12-1*01 TRAJ21*01 CASGGHTGELFF TRBV2*01 TRBJ2-2*01 HLA-A*02:01 B2M MHCI AIIRILQQL VPR HIV-1 PMID:34811538 tetramer-sort yes amplicon-seq Naive T cells T1D T1D_7 chip0514_101245 PBMC +12343 CASSTSIDTQYF TRBV7-6*01 TRBJ2-3*01 HLA-A*02:01 B2M MHCI ALWMRLLPL PREINS HomoSapiens PMID:34811538 tetramer-sort yes amplicon-seq Naive T cells T1D T1D_7 chip0514_756617 PBMC +12344 CAGGGSQGNLIF TRAV27*01 TRAJ42*01 HLA-A*02:01 B2M MHCI GILGFVFTL M1 InfluenzaA PMID:34811538 tetramer-sort yes amplicon-seq transitional T cells between effector and memory populations T1D T1D_8 chip0514_93601 PBMC +12345 CSVVGPDSGNTIYF TRBV29-1*01 TRBJ1-3*01 HLA-A*02:01 B2M MHCI NLFLFLFAV IGRP HomoSapiens PMID:34811538 tetramer-sort yes amplicon-seq Naive T cells T1D T1D_7 chip0514_756707 PBMC +12346 CASSQVVGAYGYTF TRBV3-1*01 TRBJ1-2*01 HLA-A*02:01 B2M MHCI YVLDHLIVV BRLF1 EBV PMID:34811538 tetramer-sort yes amplicon-seq effector T cells T1D T1D_8 chip0514_730452 PBMC +12347 PFLGVYNQGGKLIF TRAV40*01 TRAJ23*01 CATSEWTSGRGGGEQFF TRBV24-1*01 TRBJ2-1*01 HLA-A*02:01 B2M MHCI YVLDHLIVV BRLF1 EBV PMID:34811538 tetramer-sort yes amplicon-seq effector T cells T1D T1D_7 chip0514_203631 PBMC +12348 CASSFGLSYEQYF TRBV27*01 TRBJ2-7*01 HLA-A*02:01 B2M MHCI LVGPTPVNI POL HIV-1 PMID:34811538 tetramer-sort yes amplicon-seq Naive T cells T1D T1D_7 chip0514_153562 PBMC +12349 CASSPGTGGADTQYF TRBV6-2*01,TRBV6-3*01 TRBJ2-3*01 HLA-A*02:01 B2M MHCI YVLDHLIVV BRLF1 EBV PMID:34811538 tetramer-sort yes amplicon-seq effector memory T cells T1D T1D_7 chip0514_672511 PBMC +12350 CAVSPNDMRF TRAV12-2*01 TRAJ43*01 CSARDLRGGLQTQYF TRBV20-1*01 TRBJ2-5*01 HLA-A*02:01 B2M MHCI LLAGIGTVPI PGT HomoSapiens PMID:34811538 tetramer-sort yes amplicon-seq Naive T cells T1D T1D_7 chip0514_8129 PBMC +12351 CATEGDSGYSTLTF TRAV17*01 TRAJ11*01 HLA-A*02:01 B2M MHCI FLYALALLL LMP2 EBV PMID:34811538 tetramer-sort yes amplicon-seq central memory T cells T1D T1D_7 chip0514_106843 PBMC +12352 CAVSSGYSTLTF TRAV8-1*01 TRAJ11*01 CASSSLSGSGQPQHF TRBV28*01 TRBJ1-5*01 HLA-A*02:01 B2M MHCI YVLDHLIVV BRLF1 EBV PMID:34811538 tetramer-sort yes amplicon-seq effector T cells T1D T1D_7 chip0514_63439 PBMC +12353 CALYSGGGADGLTF TRAV12-3*01 TRAJ45*01 CASSTLRTGVTEAFF TRBV6-5*01 TRBJ1-1*01 HLA-A*02:01 B2M MHCI LLAGIGTVPI PGT HomoSapiens PMID:34811538 tetramer-sort yes amplicon-seq Naive T cells T1D T1D_8 chip0514_880403 PBMC +12354 GVVNTNAGKSTF TRAV12-1*01 TRAJ27*01 CASSGAEYSNQPQHF TRBV2*01 TRBJ1-5*01 HLA-A*02:01 B2M MHCI TIADFWQMV PTPRN HomoSapiens PMID:34811538 tetramer-sort yes amplicon-seq Naive T cells T1D T1D_7 chip0514_536091 PBMC +12355 CAMSRGNFGNEKLTF TRAV12-3*01 TRAJ48*01 CASSALTSEGRGEQFF TRBV28*01 TRBJ2-1*01 HLA-A*02:01 B2M MHCI LLAGIGTVPI PGT HomoSapiens PMID:34811538 tetramer-sort yes amplicon-seq Naive T cells T1D T1D_7 chip0514_140621 PBMC +12356 CASSVRSSYEQYF TRBV19*01 TRBJ2-7*01 HLA-A*02:01 B2M MHCI GILGFVFTL M1 InfluenzaA PMID:34811538 tetramer-sort yes amplicon-seq effector T cells T1D T1D_8 chip0514_438436 PBMC +12357 CAVGGAETRIF TRAV8-1*01 TRAJ34*01 CATSGWQGSEETQYF TRBV24-1*01 TRBJ2-5*01 HLA-A*02:01 B2M MHCI YVLDHLIVV BRLF1 EBV PMID:34811538 tetramer-sort yes amplicon-seq effector memory T cells T1D T1D_7 chip0514_337624 PBMC +12358 CAMRDEDYKLSF TRAV14/DV4*01 TRAJ20*01 CASSESGRGQSETQYF TRBV10-1*01 TRBJ2-5*01 HLA-A*02:01 B2M MHCI RGPGRAFVTI GP160 HIV-1 PMID:34811538 tetramer-sort yes amplicon-seq effector T cells T1D T1D_7 chip0514_815017 PBMC +12359 CASSPQGGGYGYTF TRBV6-1*01 TRBJ1-2*01 HLA-A*02:01 B2M MHCI FLYALALLL LMP2 EBV PMID:34811538 tetramer-sort yes amplicon-seq effector memory T cells T1D T1D_7 chip0514_13995 PBMC +12360 CALSDRNVGANSKLTF TRAV9-2*01 TRAJ56*01 CSVALGSSYEQYF TRBV29-1*01 TRBJ2-7*01 HLA-A*02:01 B2M MHCI RQFGPDWIVA ADH HomoSapiens PMID:34811538 tetramer-sort yes amplicon-seq Naive T cells T1D T1D_7 chip0514_448450 PBMC +12362 RAAPIYL??tGKAKLTC TRAV13-1*01 TRAJ48*01 CASSLVGGDYEQYF TRBV27*01 TRBJ2-7*01 HLA-A*02:01 B2M MHCI ALWMRLLPL PREINS HomoSapiens PMID:34811538 tetramer-sort yes amplicon-seq Naive T cells T1D T1D_7 chip0514_573412 PBMC +12363 CASSTGSYGYTF TRBV19*01 TRBJ1-2*01 HLA-A*02:01 B2M MHCI GILGFVFTL M1 InfluenzaA PMID:34811538 tetramer-sort yes amplicon-seq transitional T cells between effector and memory populations T1D T1D_8 chip0514_249839 PBMC +12364 CAVTLTGGGNKLTF TRAV12-2*01 TRAJ10*01 CASSQGSGGSQPQHF TRBV3-1*01 TRBJ1-5*01 HLA-A*02:01 B2M MHCI LLAGIGTVPI PGT HomoSapiens PMID:34811538 tetramer-sort yes amplicon-seq Naive T cells T1D T1D_7 chip0514_246047 PBMC +12365 CASSLRDEQFF TRAV38-1*01 TRAJ50*01 CASSLRDEQFF TRBV7-9*01 TRBJ2-1*01 HLA-A*02:01 B2M MHCI RLLPLLALLAL INS HomoSapiens PMID:34811538 tetramer-sort yes amplicon-seq Naive T cells T1D T1D_7 chip0514_571894 PBMC +12366 CAMSGGFQKLVF TRAV12-3*01 TRAJ8*01 CASSLGLAVTDTQYF TRBV12-3*01,TRBV12-4*01 TRBJ2-3*01 HLA-A*02:01 B2M MHCI LLAGIGTVPI PGT HomoSapiens PMID:34811538 tetramer-sort yes amplicon-seq Naive T cells T1D T1D_7 chip0514_381098 PBMC +12368 CAVKARGLIF TRAV12-2*01 TRAJ23*01 HLA-A*02:01 B2M MHCI LLAGIGTVPI PGT HomoSapiens PMID:34811538 tetramer-sort yes amplicon-seq Naive T cells T1D T1D_7 chip0514_250665 PBMC +12369 CAVSSGYSTLTF TRAV8-1*01 TRAJ11*01 CASSSLSGSGQPQHF TRBV28*01 TRBJ1-5*01 HLA-A*02:01 B2M MHCI YVLDHLIVV BRLF1 EBV PMID:34811538 tetramer-sort yes amplicon-seq effector memory T cells T1D T1D_7 chip0514_814453 PBMC +12370 CSAGARTGELFF TRBV29-1*01 TRBJ2-2*01 HLA-A*02:01 B2M MHCI ALGIGILTV MART1 HomoSapiens PMID:34811538 tetramer-sort yes amplicon-seq Naive T cells T1D T1D_7 chip0514_669696 PBMC +12371 CAGGTDSWGQLQF TRAV12-3*01 TRAJ24*01 HLA-A*02:01 B2M MHCI LLAGIGTVPI PGT HomoSapiens PMID:34811538 tetramer-sort yes amplicon-seq Naive T cells T1D T1D_7 chip0514_481087 PBMC +12372 CVMSLSNFGNEKLTF TRAV12-1*01 TRAJ48*01 HLA-A*02:01 B2M MHCI LLAGIGTVPI PGT HomoSapiens PMID:34811538 tetramer-sort yes amplicon-seq Naive T cells T1D T1D_7 chip0514_650214 PBMC +12373 CAVGIWgg??gtYQRVTF TRAV1-2*01 TRAJ13*01 CASSQVPGEKLFF TRBV4-1*01 TRBJ1-4*01 HLA-A*02:01 B2M MHCI LALWGPDPAA INS HomoSapiens PMID:34811538 tetramer-sort yes amplicon-seq Naive T cells T1D T1D_7 chip0514_849463 PBMC +12374 CAMSRSNVGPGNLTF TRAV12-3*01 TRAJ48*01 HLA-A*02:01 B2M MHCI LLAGIGTVPI PGT HomoSapiens PMID:34811538 tetramer-sort yes amplicon-seq Naive T cells T1D T1D_7 chip0514_256546 PBMC +12375 CAADSSYKLIF TRAV12-1*01 TRAJ12*01 CASSLGAQPQHF TRBV12-3*01,TRBV12-4*01 TRBJ1-5*01 HLA-A*02:01 B2M MHCI ALAGIGILTV MART1 HomoSapiens PMID:34811538 tetramer-sort yes amplicon-seq Naive T cells T1D T1D_7 chip0514_48275 PBMC +12376 CASSPQGGGYGYTF TRBV6-1*01 TRBJ1-2*01 HLA-A*02:01 B2M MHCI FLYALALLL LMP2 EBV PMID:34811538 tetramer-sort yes amplicon-seq effector memory T cells T1D T1D_7 chip0514_156973 PBMC +12377 CAPPLgg?NNRLAH TRAV13-1*01 TRAJ7*01 HLA-A*02:01 B2M MHCI AAGIGILTV MART1 HomoSapiens PMID:34811538 tetramer-sort yes amplicon-seq Naive T cells T1D T1D_7 chip0514_8576 PBMC +12379 CASSLDRGLLYTIYF TRBV28*01 TRBJ1-3*01 HLA-A*02:01 B2M MHCI RGPGRAFVTI GP160 HIV-1 PMID:34811538 tetramer-sort yes amplicon-seq Naive T cells T1D T1D_7 chip0514_766469 PBMC +12380 FVMEGASGSGTLTF TRAV17*01 TRAJ11*01 HLA-A*02:01 B2M MHCI FLYALALLL LMP2 EBV PMID:34811538 tetramer-sort yes amplicon-seq effector memory T cells T1D T1D_7 chip0514_420812 PBMC +12382 CAVKDTDKLIF TRAV8-1*01 TRAJ34*01 CSATDSTYNEQFF TRBV20-1*01 TRBJ2-1*01 HLA-A*02:01 B2M MHCI YVLDHLIVV BRLF1 EBV PMID:34811538 tetramer-sort yes amplicon-seq effector T cells T1D T1D_7 chip0514_77428 PBMC +12384 CAPAGASGYSTLTF TRAV17*01 TRAJ11*01 HLA-A*02:01 B2M MHCI FLYALALLL LMP2 EBV PMID:34811538 tetramer-sort yes amplicon-seq effector memory T cells T1D T1D_7 chip0514_707880 PBMC +12385 CASSQDIGRLASGGDEQFF TRBV4-3*01 TRBJ2-1*01 HLA-A*02:01 B2M MHCI FLWSVFWLI IGRP HomoSapiens PMID:34811538 tetramer-sort yes amplicon-seq Naive T cells T1D T1D_7 chip0514_369464 PBMC +12386 CAMSGGNDYKLSF TRAV12-3*01 TRAJ20*01 CSVAKAGLTDNYGYTF TRBV29-1*01 TRBJ1-2*01 HLA-A*02:01 B2M MHCI LLAGIGTVPI PGT HomoSapiens PMID:34811538 tetramer-sort yes amplicon-seq Naive T cells T1D T1D_8 chip0514_615509 PBMC +12387 CAVSSGYSTLTF TRAV8-1*01 TRAJ11*01 CASSSLSGSGQPQHF TRBV28*01 TRBJ1-5*01 HLA-A*02:01 B2M MHCI YVLDHLIVV BRLF1 EBV PMID:34811538 tetramer-sort yes amplicon-seq effector memory T cells T1D T1D_7 chip0514_100450 PBMC +12388 CAMSLSNFGNEKLTF TRAV12-3*01 TRAJ48*01 HLA-A*02:01 B2M MHCI LLAGIGTVPI PGT HomoSapiens PMID:34811538 tetramer-sort yes amplicon-seq Naive T cells T1D T1D_7 chip0514_854785 PBMC +12389 CSASRDEQFF TRBV20-1*01 TRBJ2-1*01 HLA-A*02:01 B2M MHCI LLFNILGGWV NS4B HCV PMID:34811538 tetramer-sort yes amplicon-seq Naive T cells T1D T1D_8 chip0514_15924 PBMC +12391 CASSRQGGNYGYTF TRBV6-1*01 TRBJ1-2*01 HLA-A*02:01 B2M MHCI FLYALALLL LMP2 EBV PMID:34811538 tetramer-sort yes amplicon-seq effector memory T cells T1D T1D_7 chip0514_111792 PBMC +12392 CAMSTANFGNEKLTF TRAV12-3*01 TRAJ48*01 HLA-A*02:01 B2M MHCI LLAGIGTVPI PGT HomoSapiens PMID:34811538 tetramer-sort yes amplicon-seq Naive T cells T1D T1D_8 chip0514_777663 PBMC +12395 CASSSRSct??caGTSPYIF TRAV9-2*01 TRAJ40*01 HLA-A*02:01 B2M MHCI ALAGIGILTV MART1 HomoSapiens PMID:34811538 tetramer-sort yes amplicon-seq effector T cells T1D T1D_7 chip0514_298987 PBMC +12396 CATEGNSGYSTLTF TRAV17*01 TRAJ11*01 CASSYQGGGSYGYTF TRBV6-5*01 TRBJ1-2*01 HLA-A*02:01 B2M MHCI FLYALALLL LMP2 EBV PMID:34811538 tetramer-sort yes amplicon-seq effector memory T cells T1D T1D_7 chip0514_810151 PBMC +12397 CAVKDTNKLIF TRAV8-1*01 TRAJ34*01 CASSGLRGSKETQYF TRBV6-1*01 TRBJ2-5*01 HLA-A*02:01 B2M MHCI YVLDHLIVV BRLF1 EBV PMID:34811538 tetramer-sort yes amplicon-seq effector memory T cells T1D T1D_7 chip0514_560710 PBMC +12399 CAFMKDAGGTSYGKLTF TRAV38-1*01 TRAJ52*01 CASSTGVYGYTF TRBV19*01 TRBJ1-2*01 HLA-A*02:01 B2M MHCI GILGFVFTL M1 InfluenzaA PMID:34811538 tetramer-sort yes amplicon-seq transitional T cells between effector and memory populations T1D T1D_7 chip0514_878506 PBMC +12400 CAVSWGSQGNLIF TRAV12-2*01 TRAJ42*01 HLA-A*02:01 B2M MHCI LLAGIGTVPI PGT HomoSapiens PMID:34811538 tetramer-sort yes amplicon-seq Naive T cells T1D T1D_7 chip0514_599157 PBMC +12401 CLVGAAMYNNNDMRS TRAV4*01 TRAJ43*01 CASNKLDEGVDEQYF TRBV28*01 TRBJ2-7*01 HLA-A*02:01 B2M MHCI YLLPRRGPRL POL HCV PMID:34811538 tetramer-sort yes amplicon-seq Naive T cells T1D T1D_7 chip0514_634876 PBMC +12402 CATVGNSGYSTLTF TRAV17*01 TRAJ11*01 CASSGQGGHYGYTF TRBV6-1*01 TRBJ1-2*01 HLA-A*02:01 B2M MHCI FLYALALLL LMP2 EBV PMID:34811538 tetramer-sort yes amplicon-seq central memory T cells T1D T1D_8 chip0514_104076 PBMC +12403 CSVGDGGTNEKLFF TRBV29-1*01 TRBJ1-4*01 HLA-A*02:01 B2M MHCI GLCTLVAML BLMF1 EBV PMID:34811538 tetramer-sort yes amplicon-seq transitional T cells between effector and memory populations T1D T1D_7 chip0514_869280 PBMC +12404 CLQHTTYALTF TRAV4*01 TRAJ41*01 CSAERDGYTF TRBV20-1*01 TRBJ1-2*01 HLA-A*02:01 B2M MHCI CINGVCWTV NS3 HCV PMID:34811538 tetramer-sort yes amplicon-seq Naive T cells T1D T1D_7 chip0514_146939 PBMC +12406 CVVSSANFGNEKLTF TRAV12-1*01 TRAJ48*01 HLA-A*02:01 B2M MHCI LLAGIGTVPI PGT HomoSapiens PMID:34811538 tetramer-sort yes amplicon-seq Naive T cells T1D T1D_7 chip0514_389626 PBMC +12408 CALSEDISNFGNEKLTF TRAV19*01 TRAJ48*01 CSARADTIPYNEQFF TRBV20-1*01 TRBJ2-1*01 HLA-A*02:01 B2M MHCI VLFGLGFAI IGRP HomoSapiens PMID:34811538 tetramer-sort yes amplicon-seq Naive T cells T1D T1D_8 chip0514_379161 PBMC +12409 CAMSASNFGNEKLTF TRAV12-3*01 TRAJ48*01 CA*QLKQWgg??aaTVPDTQYF TRBV7-3*01 TRBJ2-3*01 HLA-A*02:01 B2M MHCI LLAGIGTVPI PGT HomoSapiens PMID:34811538 tetramer-sort yes amplicon-seq Naive T cells T1D T1D_7 chip0514_782155 PBMC +12410 CASSIRSSYEQYF TRBV19*01 TRBJ2-7*01 HLA-A*02:01 B2M MHCI GILGFVFTL M1 InfluenzaA PMID:34811538 tetramer-sort yes amplicon-seq transitional T cells between effector and memory populations T1D T1D_7 chip0514_15682 PBMC +12412 CASSPRYTTNEKLFF TRBV12-3*01,TRBV12-4*01 TRBJ1-4*01 HLA-A*02:01 B2M MHCI ALAGIGILTV MART1 HomoSapiens PMID:34811538 tetramer-sort yes amplicon-seq Naive T cells T1D T1D_7 chip0514_775141 PBMC +12413 CAMSLSNFGNEKLTF TRAV12-3*01 TRAJ48*01 CASSLDTGNNEQFF TRBV27*01 TRBJ2-1*01 HLA-A*02:01 B2M MHCI LLAGIGTVPI PGT HomoSapiens PMID:34811538 tetramer-sort yes amplicon-seq Naive T cells T1D T1D_7 chip0514_626486 PBMC +12414 CAGTTEDSNYQLIW TRAV25*01 TRAJ33*01 CSARDLRAGRAYEQYF TRBV20-1*01 TRBJ2-7*01 HLA-A*02:01 B2M MHCI CLGGLLTMV LMP2A EBV PMID:34811538 tetramer-sort yes amplicon-seq central memory T cells T1D T1D_8 chip0514_353617 PBMC +12415 CAESSGASGKLIF TRAV5*01 TRAJ37*01 CSVGTGGTNEKLFF TRBV29-1*01 TRBJ1-4*01 HLA-A*02:01 B2M MHCI GLCTLVAML BLMF1 EBV PMID:34811538 tetramer-sort yes amplicon-seq effector memory T cells T1D T1D_8 chip0514_476605 PBMC +12417 CVVTASNFGNEKLTF TRAV12-1*01 TRAJ48*01 CASSDVSTEAFF TRBV2*01 TRBJ1-1*01 HLA-A*02:01 B2M MHCI LLAGIGTVPI PGT HomoSapiens PMID:34811538 tetramer-sort yes amplicon-seq Naive T cells T1D T1D_7 chip0514_400693 PBMC +12418 CASSPRQGIASRVTQYF TRBV9*01 TRBJ2-3*01 HLA-A*02:01 B2M MHCI ALTAVAEEV PTPRN HomoSapiens PMID:34811538 tetramer-sort yes amplicon-seq Naive T cells T1D T1D_7 chip0514_314984 PBMC +12419 CAVVSSKSTF TRAV8-3*01 TRAJ27*01 CASSSGEGYIQYF TRBV19*01 TRBJ2-4*01 HLA-A*02:01 B2M MHCI ALGIGILTV MART1 HomoSapiens PMID:34811538 tetramer-sort yes amplicon-seq Naive T cells T1D T1D_8 chip0514_102975 PBMC +12420 CAESDDNNDMRF TRAV13-2*01 TRAJ43*01 HLA-A*02:01 B2M MHCI RGPGRAFVTI GP160 HIV-1 PMID:34811538 tetramer-sort yes amplicon-seq Naive T cells T1D T1D_7 chip0514_605538 PBMC +12422 CAYPAGAGGPRSGALTF TRAV38-2/DV8*01 TRAJ52*01 CASSIGSYGYTF TRBV19*01 TRBJ1-2*01 HLA-A*02:01 B2M MHCI GILGFVFTL M1 InfluenzaA PMID:34811538 tetramer-sort yes amplicon-seq transitional T cells between effector and memory populations T1D T1D_8 chip0514_477077 PBMC +12423 CAMREGVARSEGLVS TRAV14/DV4*01 TRAJ12*01 HLA-A*02:01 B2M MHCI YLLPGWKL VP3 RotavirusA PMID:34811538 tetramer-sort yes amplicon-seq Naive T cells T1D T1D_7 chip0514_167104 PBMC +12424 CAMREGNtg??gaANSKLTF TRAV14/DV4*01 TRAJ56*01 CSAAVTATYGYTF TRBV20-1*01 TRBJ1-2*01 HLA-A*02:01 B2M MHCI YVLDHLIVV BRLF1 EBV PMID:34811538 tetramer-sort yes amplicon-seq effector T cells T1D T1D_7 chip0514_426613 PBMC +12425 CAVKDTDKLIF TRAV8-1*01 TRAJ34*01 HLA-A*02:01 B2M MHCI YVLDHLIVV BRLF1 EBV PMID:34811538 tetramer-sort yes amplicon-seq effector memory T cells T1D T1D_7 chip0514_491016 PBMC +12426 CPSSFYRNQPQHL TRBV19*01 TRBJ1-5*01 HLA-A*02:01 B2M MHCI GILGFVFTL M1 InfluenzaA PMID:34811538 tetramer-sort yes amplicon-seq transitional T cells between effector and memory populations T1D T1D_8 chip0514_834295 PBMC +12427 CVGSRGGGSYIPTF TRAV12-1*01 TRAJ6*01 CASSQDSSEAFF TRBV4-2*01 TRBJ1-1*01 HLA-A*02:01 B2M MHCI YLQQNWWTL LMP1 EBV PMID:34811538 tetramer-sort yes amplicon-seq central memory T cells T1D T1D_7 chip0514_633929 PBMC +12428 CAVNRDDKIIF TRAV12-2*01 TRAJ30*01 HLA-A*02:01 B2M MHCI LVGPTPVNI POL HIV-1 PMID:34811538 tetramer-sort yes amplicon-seq Naive T cells T1D T1D_7 chip0514_213655 PBMC +12429 CSARGSTFYERYF TRBV20-1*01 TRBJ2-7*01 HLA-A*02:01 B2M MHCI YVLDHLIVV BRLF1 EBV PMID:34811538 tetramer-sort yes amplicon-seq effector memory T cells T1D T1D_7 chip0514_334478 PBMC +12432 CASSPSEGLYTDTQYF TRBV13*01 TRBJ2-3*01 HLA-A*02:01 B2M MHCI YLLPRRGPRL POL HCV PMID:34811538 tetramer-sort yes amplicon-seq Naive T cells T1D T1D_7 chip0514_30389 PBMC +12433 CALSLYNTDKLIF TRAV16*01 TRAJ34*01 CSALGGDSYEQYF TRBV20-1*01 TRBJ2-7*01 HLA-A*02:01 B2M MHCI YLLLRVLNI IGRP HomoSapiens PMID:34811538 tetramer-sort yes amplicon-seq Naive T cells T1D T1D_7 chip0514_333942 PBMC +12434 CASKRTTSGGITDTQYF TRBV28*01 TRBJ2-3*01 HLA-A*02:01 B2M MHCI LLAGIGTVPI PGT HomoSapiens PMID:34811538 tetramer-sort yes amplicon-seq Naive T cells T1D T1D_7 chip0514_773880 PBMC +12435 CAMKGSNFGNEKLTF TRAV12-3*01 TRAJ48*01 HLA-A*02:01 B2M MHCI LLAGIGTVPI PGT HomoSapiens PMID:34811538 tetramer-sort yes amplicon-seq natural killer-like T cells T1D T1D_8 chip0514_847847 PBMC +12437 CAVRDWGSYIPTF TRAV3*01 TRAJ6*01 CASSTPERAGSYEQYF TRBV5-6*01 TRBJ2-7*01 HLA-A*02:01 B2M MHCI LVGPTPVNI POL HIV-1 PMID:34811538 tetramer-sort yes amplicon-seq Naive T cells T1D T1D_8 chip0514_419176 PBMC +12438 CASSLSGRENTGELFF TRBV28*01 TRBJ2-2*01 HLA-A*02:01 B2M MHCI MVWESGCTV PTPRN HomoSapiens PMID:34811538 tetramer-sort yes amplicon-seq Naive T cells T1D T1D_7 chip0514_125917 PBMC +12440 CSARYLRGTQNEQFF TRBV20-1*01 TRBJ2-1*01 HLA-A*02:01 B2M MHCI LLAGIGTVPI PGT HomoSapiens PMID:34811538 tetramer-sort yes amplicon-seq Naive T cells T1D T1D_7 chip0514_76617 PBMC +12441 CASSSLSGSGQPQHF TRBV28*01 TRBJ1-5*01 HLA-A*02:01 B2M MHCI YVLDHLIVV BRLF1 EBV PMID:34811538 tetramer-sort yes amplicon-seq effector T cells T1D T1D_7 chip0514_21504 PBMC +12442 CSVVGLDPGELFF TRBV20-1*01 TRBJ2-2*01 HLA-A*02:01 B2M MHCI LLAGIGTVPI PGT HomoSapiens PMID:34811538 tetramer-sort yes amplicon-seq Naive T cells T1D T1D_7 chip0514_116483 PBMC +12443 CAVLPGGATTKLIF TRAV1-2*01 TRAJ32*01 HLA-A*02:01 B2M MHCI LLMEGVPKSL ZNT8 HomoSapiens PMID:34811538 tetramer-sort yes amplicon-seq Naive T cells T1D T1D_7 chip0514_404737 PBMC +12444 CPLGTGGSHVYLIF TRAV25*01 TRAJ42*01 HLA-A*02:01 B2M MHCI ALAGIGILTV MART1 HomoSapiens PMID:34811538 tetramer-sort yes amplicon-seq Naive T cells T1D T1D_7 chip0514_804540 PBMC +12445 CAVLMDSNYQLIW TRAV21*01 TRAJ33*01 CASSEDGMNTEAFF TRBV10-2*01 TRBJ1-1*01 HLA-A*02:01 B2M MHCI CLGGLLTMV LMP2A EBV PMID:34811538 tetramer-sort yes amplicon-seq effector memory T cells T1D T1D_7 chip0514_315116 PBMC +12446 CAMREALEGGSEKLVF TRAV14/DV4*01 TRAJ57*01 HLA-A*02:01 B2M MHCI YLLPGWKL VP3 RotavirusA PMID:34811538 tetramer-sort yes amplicon-seq Naive T cells T1D T1D_7 chip0514_162037 PBMC +12447 CAVTPHARLMF TRAV3*01 TRAJ31*01 CASSLSVSEFYNEQFF TRBV27*01 TRBJ2-1*01 HLA-A*02:01 B2M MHCI YVLDHLIVV BRLF1 EBV PMID:34811538 tetramer-sort yes amplicon-seq effector memory T cells T1D T1D_7 chip0514_384125 PBMC +12449 CAVKDTDKLIF TRAV8-1*01 TRAJ34*01 CASSPLLGSNQPQHF TRBV19*01 TRBJ1-5*01 HLA-A*02:01 B2M MHCI YVLDHLIVV BRLF1 EBV PMID:34811538 tetramer-sort yes amplicon-seq effector T cells T1D T1D_7 chip0514_537695 PBMC +12450 CAMSISNFGNEKLTF TRAV12-3*01 TRAJ48*01 CASSSPDTVNTEAFF TRBV5-1*01 TRBJ1-1*01 HLA-A*02:01 B2M MHCI LLAGIGTVPI PGT HomoSapiens PMID:34811538 tetramer-sort yes amplicon-seq Naive T cells T1D T1D_7 chip0514_634522 PBMC +12451 CAIGISNFGNEKLTF TRAV12-3*01 TRAJ48*01 CASSNTQVSGTSGGYEQYF TRBV7-8*01 TRBJ2-7*01 HLA-A*02:01 B2M MHCI LLAGIGTVPI PGT HomoSapiens PMID:34811538 tetramer-sort yes amplicon-seq Naive T cells T1D T1D_7 chip0514_10993 PBMC +12452 CAMSKSNFGNEKLTF TRAV12-3*01 TRAJ48*01 HLA-A*02:01 B2M MHCI LLAGIGTVPI PGT HomoSapiens PMID:34811538 tetramer-sort yes amplicon-seq Naive T cells T1D T1D_7 chip0514_655762 PBMC +12453 VAGGTSYGKLTF TRAV27*01 TRAJ52*01 CASSGGAGGAWYGYTF TRBV2*01 TRBJ1-2*01 HLA-A*02:01 B2M MHCI RGPGRAFVTI GP160 HIV-1 PMID:34811538 tetramer-sort yes amplicon-seq Naive T cells T1D T1D_7 chip0514_37184 PBMC +12454 CASSRGQGSYEQYF TRBV7-9*01 TRBJ2-7*01 HLA-A*02:01 B2M MHCI RQFGPDWIVA ADH HomoSapiens PMID:34811538 tetramer-sort yes amplicon-seq Naive T cells T1D T1D_7 chip0514_230946 PBMC +12455 CAMTLANFGPAGLAF TRAV12-3*01 TRAJ48*01 HLA-A*02:01 B2M MHCI LLAGIGTVPI PGT HomoSapiens PMID:34811538 tetramer-sort yes amplicon-seq Naive T cells T1D T1D_7 chip0514_105303 PBMC +12456 RATRESGGSLHVSF TRAV14/DV4*01,TRAV29/DV5*01 TRAJ13*01 CASSLEVKAGELFF TRBV5-4*01 TRBJ2-2*01 HLA-A*02:01 B2M MHCI LLFNILGGWV NS4B HCV PMID:34811538 tetramer-sort yes amplicon-seq Naive T cells T1D T1D_8 chip0514_822747 PBMC +12457 CASSSLSGSGQPQHF TRBV28*01 TRBJ1-5*01 HLA-A*02:01 B2M MHCI YVLDHLIVV BRLF1 EBV PMID:34811538 tetramer-sort yes amplicon-seq effector T cells T1D T1D_7 chip0514_205930 PBMC +12460 CATSGWQGSEETQYF TRBV24-1*01 TRBJ2-5*01 HLA-A*02:01 B2M MHCI YVLDHLIVV BRLF1 EBV PMID:34811538 tetramer-sort yes amplicon-seq transitional T cells between effector and memory populations T1D T1D_7 chip0514_201630 PBMC +12462 CASSLQGGNTQYF TRBV6-5*01 TRBJ2-3*01 HLA-A*02:01 B2M MHCI FLYALALLL LMP2 EBV PMID:34811538 tetramer-sort yes amplicon-seq central memory T cells T1D T1D_7 chip0514_545223 PBMC +12463 CATDANDYKLSF TRAV17*01 TRAJ20*01 CASSLGEGGTGELFF TRBV7-9*01 TRBJ2-2*01 HLA-A*02:01 B2M MHCI GIIYIIYKL P3A CoxsackievirusB PMID:34811538 tetramer-sort yes amplicon-seq Naive T cells T1D T1D_7 chip0514_105862 PBMC +12464 CSVEDSLASGSLNEQFF TRBV29-1*01 TRBJ2-1*01 HLA-A*02:01 B2M MHCI GLCTLVAML BLMF1 EBV PMID:34811538 tetramer-sort yes amplicon-seq effector memory T cells T1D T1D_7 chip0514_383394 PBMC +12465 CVGTRSGGSYIPTF TRAV12-1*01 TRAJ6*01 HLA-A*02:01 B2M MHCI YLQQNWWTL LMP1 EBV PMID:34811538 tetramer-sort yes amplicon-seq central memory T cells T1D T1D_8 chip0514_288068 PBMC +12466 CAYFGGSQGNLIF TRAV38-1*01 TRAJ42*01 LCQQLPGac??agGVWEQYF TRBV5-4*01 TRBJ2-7*01 HLA-A*02:01 B2M MHCI KMYAFTLES ZNT8 HomoSapiens PMID:34811538 tetramer-sort yes amplicon-seq Naive T cells T1D T1D_7 chip0514_600046 PBMC +12467 CAWSVGGLHNEQFF TRBV30*01 TRBJ2-1*01 HLA-A*02:01 B2M MHCI LLAGIGTVPI PGT HomoSapiens PMID:34811538 tetramer-sort yes amplicon-seq Naive T cells tet_neg chip0514_20807 PBMC +12469 CAMSASNSGNEKLTF TRAV12-3*01 TRAJ48*01 HLA-A*02:01 B2M MHCI LLAGIGTVPI PGT HomoSapiens PMID:34811538 tetramer-sort yes amplicon-seq Naive T cells T1D T1D_7 chip0514_481970 PBMC +12470 CASSLPGQTYDRQYF TRBV7-9*01 TRBJ2-7*01 HLA-A*02:01 B2M MHCI RGPGRAFVTI GP160 HIV-1 PMID:34811538 tetramer-sort yes amplicon-seq Naive T cells T1D T1D_7 chip0514_808223 PBMC +12471 CASSLEVASPGELFF TRBV7-8*01 TRBJ2-2*01 HLA-A*02:01 B2M MHCI CINGVCWTV NS3 HCV PMID:34811538 tetramer-sort yes amplicon-seq Naive T cells T1D T1D_7 chip0514_460646 PBMC +12472 CAMSLSNFGNEKLTF TRAV12-3*01 TRAJ48*01 CASSSGVSGAQGFDEQFF TRBV5-1*01 TRBJ2-1*01 HLA-A*02:01 B2M MHCI LLAGIGTVPI PGT HomoSapiens PMID:34811538 tetramer-sort yes amplicon-seq Naive T cells T1D T1D_7 chip0514_316804 PBMC +12474 CALSLSTFGNEKLTF TRAV12-3*01 TRAJ48*01 CAWSTRLAGVPYEQYF TRBV30*01 TRBJ2-7*01 HLA-A*02:01 B2M MHCI LLAGIGTVPI PGT HomoSapiens PMID:34811538 tetramer-sort yes amplicon-seq Naive T cells T1D T1D_7 chip0514_374704 PBMC +12475 CASSFSGELFF TRBV7-9*01 TRBJ2-2*01 HLA-A*02:01 B2M MHCI RGPGRAFVTI GP160 HIV-1 PMID:34811538 tetramer-sort yes amplicon-seq Naive T cells T1D T1D_8 chip0514_830985 PBMC +12476 CAVRSGYSTLTF TRAV8-1*01 TRAJ11*01 CASSSLSGGGQPRHF TRBV28*01 TRBJ1-5*01 HLA-A*02:01 B2M MHCI YVLDHLIVV BRLF1 EBV PMID:34811538 tetramer-sort yes amplicon-seq effector T cells T1D T1D_7 chip0514_493470 PBMC +12477 CAVSGVYQSVTF TRAV12-2*01 TRAJ13*01 CASSGRDRGYNEQFF TRBV14*01 TRBJ2-1*01 HLA-A*02:01 B2M MHCI LLAGIGTVPI PGT HomoSapiens PMID:34811538 tetramer-sort yes amplicon-seq Naive T cells T1D T1D_8 chip0514_465068 PBMC +12478 CVVNLTGQEMRF TRAV12-1*01 TRAJ43*01 CASSLSLQGAGETQYF TRBV11-1*01 TRBJ2-5*01 HLA-A*02:01 B2M MHCI YVLDHLIVV BRLF1 EBV PMID:34811538 tetramer-sort yes amplicon-seq effector T cells T1D T1D_7 chip0514_222733 PBMC +12479 CSARVQGAWETQYF TRBV20-1*01 TRBJ2-5*01 HLA-A*02:01 B2M MHCI RGPGRAFVTI GP160 HIV-1 PMID:34811538 tetramer-sort yes amplicon-seq Naive T cells T1D T1D_8 chip0514_148442 PBMC +12480 CAAGGSYIPTF TRAV12-1*01 TRAJ6*01 CASSYEQGGQETQYF TRBV6-5*01 TRBJ2-5*01 HLA-A*02:01 B2M MHCI ALAGIGILTV MART1 HomoSapiens PMID:34811538 tetramer-sort yes amplicon-seq Naive T cells T1D T1D_7 chip0514_545523 PBMC +12481 CAGTTEDSNYQLIW TRAV25*01 TRAJ33*01 HLA-A*02:01 B2M MHCI CLGGLLTMV LMP2A EBV PMID:34811538 tetramer-sort yes amplicon-seq central memory T cells T1D T1D_8 chip0514_295682 PBMC +12483 CAVNGDSSYKLIF TRAV12-2*01 TRAJ12*01 CASSQGNIQYF TRBV3-1*01 TRBJ2-4*01 HLA-A*02:01 B2M MHCI ALAGIGILTV MART1 HomoSapiens PMID:34811538 tetramer-sort yes amplicon-seq Naive T cells T1D T1D_7 chip0514_493225 PBMC +12485 CAVTDTDKLIF TRAV8-1*01 TRAJ34*01 HLA-A*02:01 B2M MHCI YVLDHLIVV BRLF1 EBV PMID:34811538 tetramer-sort yes amplicon-seq effector T cells T1D T1D_8 chip0514_242393 PBMC +12486 CASSSSGQETQYF TRBV5-6*01 TRBJ2-5*01 HLA-A*02:01 B2M MHCI MVWESGCTV PTPRN HomoSapiens PMID:34811538 tetramer-sort yes amplicon-seq Naive T cells T1D T1D_7 chip0514_698152 PBMC +12487 CASSPAPETGNERLFF TRBV13*01 TRBJ1-4*01 HLA-A*02:01 B2M MHCI KIVALGINAV POL HCV PMID:34811538 tetramer-sort yes amplicon-seq natural killer-like T cells T1D T1D_7 chip0514_745410 PBMC +12488 CSVGTGGTNEKLFF TRBV29-1*01 TRBJ1-4*01 HLA-A*02:01 B2M MHCI GLCTLVAML BLMF1 EBV PMID:34811538 tetramer-sort yes amplicon-seq effector T cells T1D T1D_8 chip0514_694948 PBMC +12489 CASSHSLRGGGETQYF TRBV3-1*01 TRBJ2-5*01 HLA-A*02:01 B2M MHCI YVLDHLIVV BRLF1 EBV PMID:34811538 tetramer-sort yes amplicon-seq effector T cells T1D T1D_7 chip0514_736670 PBMC +12490 CAVLMDSNYQLIW TRAV21*01 TRAJ33*01 CASSEDGMNTEAFF TRBV10-2*01 TRBJ1-1*01 HLA-A*02:01 B2M MHCI CLGGLLTMV LMP2A EBV PMID:34811538 tetramer-sort yes amplicon-seq effector memory T cells T1D T1D_7 chip0514_810582 PBMC +12491 CVVSHTGGFKTIF TRAV12-1*01 TRAJ9*01 HLA-A*02:01 B2M MHCI YLVALGINAV POL HCV PMID:34811538 tetramer-sort yes amplicon-seq effector memory T cells T1D T1D_7 chip0514_457199 PBMC +12492 CASSGGQKAPGELFF TRBV2*01 TRBJ2-2*01 HLA-A*02:01 B2M MHCI GLCTLVAML BLMF1 EBV PMID:34811538 tetramer-sort yes amplicon-seq transitional T cells between effector and memory populations T1D T1D_7 chip0514_490898 PBMC +12493 CALSEASNDYTLSF TRAV19*01 TRAJ20*01 HLA-A*02:01 B2M MHCI LLAGIGTVPI PGT HomoSapiens PMID:34811538 tetramer-sort yes amplicon-seq Naive T cells T1D T1D_7 chip0514_123570 PBMC +12494 CAMSESNFGNEKLTF TRAV12-3*01 TRAJ48*01 HLA-A*02:01 B2M MHCI LLAGIGTVPI PGT HomoSapiens PMID:34811538 tetramer-sort yes amplicon-seq Naive T cells T1D T1D_7 chip0514_376080 PBMC +12495 CAVHTGGFKTIF TRAV20*01 TRAJ9*01 HLA-A*02:01 B2M MHCI YVLDHLIVV BRLF1 EBV PMID:34811538 tetramer-sort yes amplicon-seq transitional T cells between effector and memory populations T1D T1D_7 chip0514_312526 PBMC +12496 CATRVYLSNEQFF TRBV28*01 TRBJ2-1*01 HLA-A*02:01 B2M MHCI YVLDHLIVV BRLF1 EBV PMID:34811538 tetramer-sort yes amplicon-seq effector T cells T1D T1D_7 chip0514_121153 PBMC +12497 CAMTRSNFGNEKLTF TRAV12-3*01 TRAJ48*01 CACLDTLSGNTIYF TRBV30*01 TRBJ1-3*01 HLA-A*02:01 B2M MHCI LLAGIGTVPI PGT HomoSapiens PMID:34811538 tetramer-sort yes amplicon-seq Naive T cells T1D T1D_7 chip0514_781840 PBMC +12498 CAMSVSNFGNEKLTF TRAV12-3*01 TRAJ48*01 CASSQATFLRDTEAFF TRBV3-1*01 TRBJ1-1*01 HLA-A*02:01 B2M MHCI LLAGIGTVPI PGT HomoSapiens PMID:34811538 tetramer-sort yes amplicon-seq Naive T cells T1D T1D_8 chip0514_484600 PBMC +12499 CASSQDSSEAFF TRAV20*01 TRAJ40*01 CASSQDSSEAFF TRBV4-2*01 TRBJ1-1*01 HLA-A*02:01 B2M MHCI YLQQNWWTL LMP1 EBV PMID:34811538 tetramer-sort yes amplicon-seq central memory T cells T1D T1D_7 chip0514_403686 PBMC +12501 CATVGSSGYSTLTF TRAV17*01 TRAJ11*01 CASTAQGGNIQYF TRBV6-1*01 TRBJ2-4*01 HLA-A*02:01 B2M MHCI FLYALALLL LMP2 EBV PMID:34811538 tetramer-sort yes amplicon-seq effector T cells T1D T1D_7 chip0514_340602 PBMC +12502 CASSLLQGAAETQYF TRBV28*01 TRBJ2-5*01 HLA-A*02:01 B2M MHCI YVLDHLIVV BRLF1 EBV PMID:34811538 tetramer-sort yes amplicon-seq effector memory T cells T1D T1D_7 chip0514_806405 PBMC +12503 CAVGDDKIIF TRAV12-2*01 TRAJ30*01 CASSSSSGASYEQYF TRBV6-1*01 TRBJ2-7*01 HLA-A*02:01 B2M MHCI ALGIGILTV MART1 HomoSapiens PMID:34811538 tetramer-sort yes amplicon-seq transitional T cells between effector and memory populations T1D T1D_7 chip0514_273241 PBMC +12504 CAGRREEg?aSQGNLLS TRAV25*01 TRAJ42*01 HLA-A*02:01 B2M MHCI CLGGLLTMV LMP2A EBV PMID:34811538 tetramer-sort yes amplicon-seq central memory T cells T1D T1D_8 chip0514_682383 PBMC +12505 CASSLQGRYEQYF TRBV28*01 TRBJ2-7*01 HLA-A*02:01 B2M MHCI GIIYIIYKL P3A CoxsackievirusB PMID:34811538 tetramer-sort yes amplicon-seq Naive T cells T1D T1D_7 chip0514_822575 PBMC +12506 CIVRVPDgg??gtSARQLTF TRAV26-1*01 TRAJ22*01 HLA-A*02:01 B2M MHCI LLAGIGTVPI PGT HomoSapiens PMID:34811538 tetramer-sort yes amplicon-seq Naive T cells T1D T1D_8 chip0514_865305 PBMC +12507 CAMSAMGGGADGLTF TRAV12-3*01 TRAJ45*01 CASSLASPSLLLAGDGSEQFF TRBV7-8*01 TRBJ2-1*01 HLA-A*02:01 B2M MHCI LLAGIGTVPI PGT HomoSapiens PMID:34811538 tetramer-sort yes amplicon-seq Naive T cells T1D T1D_8 chip0514_116638 PBMC +12509 CATGGGADGLTF TRAV12-3*01 TRAJ45*01 HLA-A*02:01 B2M MHCI LLAGIGTVPI PGT HomoSapiens PMID:34811538 tetramer-sort yes amplicon-seq Naive T cells T1D T1D_7 chip0514_146962 PBMC +12510 CAVSLDSGGYQKVTF TRAV3*01 TRAJ13*01 CASSIAGGLHNGYTF TRBV19*01 TRBJ1-2*01 HLA-A*02:01 B2M MHCI NLFLFLFAV IGRP HomoSapiens PMID:34811538 tetramer-sort yes amplicon-seq Naive T cells T1D T1D_7 chip0514_860528 PBMC +12512 CASSRQGGNIQYF TRBV6-1*01 TRBJ2-4*01 HLA-A*02:01 B2M MHCI FLYALALLL LMP2 EBV PMID:34811538 tetramer-sort yes amplicon-seq effector memory T cells T1D T1D_7 chip0514_663864 PBMC +12513 CAVLMDSNYQLIW TRAV21*01 TRAJ33*01 CASSADGMNTEAFF TRBV10-2*01 TRBJ1-1*01 HLA-A*02:01 B2M MHCI CLGGLLTMV LMP2A EBV PMID:34811538 tetramer-sort yes amplicon-seq effector T cells T1D T1D_7 chip0514_249595 PBMC +12515 CAVKDTDKLTF TRAV8-1*01 TRAJ34*01 CSATDSTYNEQFF TRBV20-1*01 TRBJ2-1*01 HLA-A*02:01 B2M MHCI YVLDHLIVV BRLF1 EBV PMID:34811538 tetramer-sort yes amplicon-seq effector memory T cells T1D T1D_7 chip0514_756830 PBMC +12516 CAIRGGDEAYEQYF TRBV10-3*01 TRBJ2-7*01 HLA-A*02:01 B2M MHCI YVLDHLIVV BRLF1 EBV PMID:34811538 tetramer-sort yes amplicon-seq effector memory T cells T1D T1D_7 chip0514_422551 PBMC +12517 CAVEGTDKLIF TRAV8-1*01 TRAJ34*01 CASGELINEQFF TRBV3-1*01 TRBJ2-1*01 HLA-A*02:01 B2M MHCI YVLDHLIVV BRLF1 EBV PMID:34811538 tetramer-sort yes amplicon-seq effector memory T cells T1D T1D_8 chip0514_381995 PBMC +12518 CAFTQRLSARGAAGLTF TRAV38-1*01 TRAJ45*01 CASSSGGRTNKYGELFF TRBV28*01 TRBJ2-2*01 HLA-A*02:01 B2M MHCI LLFNILGGWV NS4B HCV PMID:34811538 tetramer-sort yes amplicon-seq Naive T cells T1D T1D_8 chip0514_284488 PBMC +12519 CAVLLDSNYQLIW TRAV12-3*01 TRAJ33*01 CASSEDGMNTEAFF TRBV10-2*01 TRBJ1-1*01 HLA-A*02:01 B2M MHCI CLGGLLTMV LMP2A EBV PMID:34811538 tetramer-sort yes amplicon-seq effector memory T cells T1D T1D_7 chip0514_493629 PBMC +12521 CAMRGDAGGTSYGKLTF TRAV14/DV4*01 TRAJ52*01 HLA-A*02:01 B2M MHCI GILGFVFTL M1 InfluenzaA PMID:34811538 tetramer-sort yes amplicon-seq transitional T cells between effector and memory populations T1D T1D_8 chip0514_417162 PBMC +12523 CASKAGDPGELFF TRBV5-1*01 TRBJ2-2*01 HLA-A*02:01 B2M MHCI LLAGIGTVPI PGT HomoSapiens PMID:34811538 tetramer-sort yes amplicon-seq Naive T cells T1D T1D_7 chip0514_745599 PBMC +12524 CAPGGGRRALTF TRAV12-3*01 TRAJ5*01 CASSDGQGSNEQFF TRBV6-1*01 TRBJ2-1*01 HLA-A*02:01 B2M MHCI LLAGIGTVPI PGT HomoSapiens PMID:34811538 tetramer-sort yes amplicon-seq Naive T cells T1D T1D_7 chip0514_234711 PBMC +12525 CASSISSTGELFF TRBV19*01 TRBJ2-2*01 HLA-A*02:01 B2M MHCI YVLDHLIVV BRLF1 EBV PMID:34811538 tetramer-sort yes amplicon-seq effector T cells T1D T1D_8 chip0514_235045 PBMC +12526 CASSQSGE??cPSNQPQHF TRBV4-3*01 TRBJ1-5*01 HLA-A*02:01 B2M MHCI YLLPGWKL VP3 RotavirusA PMID:34811538 tetramer-sort yes amplicon-seq Naive T cells T1D T1D_7 chip0514_404774 PBMC +12527 CVGTRSGGSYIPTF TRAV12-1*01 TRAJ6*01 HLA-A*02:01 B2M MHCI YLQQNWWTL LMP1 EBV PMID:34811538 tetramer-sort yes amplicon-seq effector memory T cells T1D T1D_8 chip0514_297188 PBMC +12528 CAVKDTDKLIF TRAV8-1*01 TRAJ34*01 CASSLYSQEQYF TRBV28*01 TRBJ2-7*01 HLA-A*02:01 B2M MHCI YVLDHLIVV BRLF1 EBV PMID:34811538 tetramer-sort yes amplicon-seq effector T cells T1D T1D_7 chip0514_690591 PBMC +12529 CASSGYTEAFF TRAV38-1*01 TRAJ40*01 CASSGYTEAFF TRBV7-9*01 TRBJ1-1*01 HLA-A*02:01 B2M MHCI RGPGRAFVTI GP160 HIV-1 PMID:34811538 tetramer-sort yes amplicon-seq Naive T cells T1D T1D_7 chip0514_289478 PBMC +12530 CAVQADSKGGSEELVF TRAV20*01 TRAJ57*01 CASSLNGNQPQHF TRBV7-6*01 TRBJ1-5*01 HLA-A*02:01 B2M MHCI KMYAFTLES ZNT8 HomoSapiens PMID:34811538 tetramer-sort yes amplicon-seq Naive T cells T1D T1D_8 chip0514_378636 PBMC +12532 CAMSGGGGSQGNLIF TRAV12-3*01 TRAJ42*01 CASGEDNEQFF TRBV4-1*01 TRBJ2-1*01 HLA-A*02:01 B2M MHCI LLAGIGTVPI PGT HomoSapiens PMID:34811538 tetramer-sort yes amplicon-seq Naive T cells T1D T1D_7 chip0514_133250 PBMC +12533 CASSLDDGQPQHF TRBV11-3*01 TRBJ1-5*01 HLA-A*02:01 B2M MHCI LLAGIGTVPI PGT HomoSapiens PMID:34811538 tetramer-sort yes amplicon-seq Naive T cells T1D T1D_7 chip0514_790047 PBMC +12535 CASTGPGGEVMNTEAFF TRBV2*01 TRBJ1-1*01 HLA-A*02:01 B2M MHCI YVLDHLIVV BRLF1 EBV PMID:34811538 tetramer-sort yes amplicon-seq effector T cells T1D T1D_8 chip0514_138742 PBMC +12537 CASSQDILKDRGDEGTQYF TRBV14*01 TRBJ2-5*01 HLA-A*02:01 B2M MHCI LLAGIGTVPI PGT HomoSapiens PMID:34811538 tetramer-sort yes amplicon-seq Naive T cells T1D T1D_7 chip0514_212249 PBMC +12539 CAVNIGGADGLTF TRAV12-2*01 TRAJ45*01 CASSPPGct??agRHNEQFF TRBV7-8*01 TRBJ2-1*01 HLA-A*02:01 B2M MHCI LLAGIGTVPI PGT HomoSapiens PMID:34811538 tetramer-sort yes amplicon-seq Naive T cells T1D T1D_8 chip0514_39437 PBMC +12541 CASSPLSSGANVLTF TRBV3-1*01 TRBJ2-6*01 HLA-A*02:01 B2M MHCI YVLDHLIVV BRLF1 EBV PMID:34811538 tetramer-sort yes amplicon-seq effector memory T cells T1D T1D_8 chip0514_406802 PBMC +12542 CASSFSGELFL TRBV7-9*01 TRBJ2-2*01 HLA-A*02:01 B2M MHCI RGPGRAFVTI GP160 HIV-1 PMID:34811538 tetramer-sort yes amplicon-seq Naive T cells T1D T1D_8 chip0514_642998 PBMC +12543 CAVKDTDKLIF TRAV8-1*01 TRAJ34*01 CASSQVVGAYGYTF TRBV3-1*01 TRBJ1-2*01 HLA-A*02:01 B2M MHCI YVLDHLIVV BRLF1 EBV PMID:34811538 tetramer-sort yes amplicon-seq effector memory T cells T1D T1D_8 chip0514_400431 PBMC +12544 CAVLMDSNYQLIW TRAV21*01 TRAJ33*01 CASSGDGMNTEAFF TRBV10-2*01 TRBJ1-1*01 HLA-A*02:01 B2M MHCI CLGGLLTMV LMP2A EBV PMID:34811538 tetramer-sort yes amplicon-seq effector memory T cells healthy healthy_6 chip0516_598431 PBMC +12545 CILPLAGGTSYGKLTF TRAV26-2*01 TRAJ52*01 CASSLGQAYEQYF TRBV7-8*01 TRBJ2-7*01 HLA-B*08:01 B2M MHCI FLRGRAYGL EBNA3A EBV PMID:34811538 tetramer-sort yes amplicon-seq effector memory T cells healthy healthy_8 chip0516_162136 PBMC +12546 CASSPSNGAGGYTF TRBV4-1*01 TRBJ1-2*01 HLA-B*08:01 B2M MHCI RAKFKQLL BZLF1 EBV PMID:34811538 tetramer-sort yes amplicon-seq effector memory T cells healthy healthy_9 chip0516_856229 PBMC +12547 CAVIMLVgt?TSYGKLTF TRAV8-4*01 TRAJ52*01 CASSLEGNYGYTF TRBV5-6*01 TRBJ1-2*01 HLA-A*01:01 B2M MHCI HSNLNDATY NP InfluenzaA PMID:34811538 tetramer-sort yes amplicon-seq transitional T cells between effector and memory populations tet_neg chip0516_66479 PBMC +12548 CILPLAGGTSYGKLTF TRAV26-2*01 TRAJ52*01 CASSLGQAYEQYF TRBV7-8*01 TRBJ2-7*01 HLA-B*08:01 B2M MHCI FLRGRAYGL EBNA3A EBV PMID:34811538 tetramer-sort yes amplicon-seq effector memory T cells healthy healthy_8 chip0516_774272 PBMC +12549 CILPLAGGTSYGKLTF TRAV26-2*01 TRAJ52*01 CASSSGQAYEQYF TRBV7-8*01 TRBJ2-7*01 HLA-B*08:01 B2M MHCI FLRGRAYGL EBNA3A EBV PMID:34811538 tetramer-sort yes amplicon-seq effector memory T cells healthy healthy_8 chip0516_863825 PBMC +12550 CASSGDGMNTEAFF TRBV10-2*01 TRBJ1-1*01 HLA-A*02:01 B2M MHCI CLGGLLTMV LMP2A EBV PMID:34811538 tetramer-sort yes amplicon-seq effector memory T cells healthy healthy_6 chip0516_840118 PBMC +12551 CAVSDTDKLIF TRAV8-1*01 TRAJ34*01 CASSSSALISDEQFF TRBV11-2*01 TRBJ2-1*01 HLA-A*02:01 B2M MHCI YVLDHLIVV BRLF1 EBV PMID:34811538 tetramer-sort yes amplicon-seq effector memory T cells healthy healthy_6 chip0516_743696 PBMC +12552 CILPLAGGTSYGKLTF TRAV26-2*01 TRAJ52*01 CASSLGQAYEQYF TRBV7-8*01 TRBJ2-7*01 HLA-B*08:01 B2M MHCI FLRGRAYGL EBNA3A EBV PMID:34811538 tetramer-sort yes amplicon-seq effector memory T cells healthy healthy_8 chip0516_44887 PBMC +12553 CILPLAGGTSYGKLTF TRAV26-2*01 TRAJ52*01 CASSSGQAYEQYF TRBV7-8*01 TRBJ2-7*01 HLA-B*08:01 B2M MHCI FLRGRAYGL EBNA3A EBV PMID:34811538 tetramer-sort yes amplicon-seq effector memory T cells healthy healthy_8 chip0516_2073 PBMC +12554 CAVLMDSNYQLIW TRAV12-3*01 TRAJ33*01 CASSGDGMNTEAFF TRBV10-2*01 TRBJ1-1*01 HLA-A*02:01 B2M MHCI CLGGLLTMV LMP2A EBV PMID:34811538 tetramer-sort yes amplicon-seq effector memory T cells healthy healthy_6 chip0516_510651 PBMC +12555 CALSPQVSDGQKLLF TRAV19*01 TRAJ16*01 HLA-A*01:01 B2M MHCI VSATAGTTVY GAD2 HomoSapiens PMID:34811538 tetramer-sort yes amplicon-seq Naive T cells healthy healthy_8 chip0516_65796 PBMC +12556 CASSRLNRGSNEQYF TRBV5-5*01 TRBJ2-7*01 HLA-B*08:01 B2M MHCI CPLSKILL LMP2A EBV PMID:34811538 tetramer-sort yes amplicon-seq transitional T cells between effector and memory populations healthy healthy_10 chip0516_506083 PBMC +12557 CAESPAARLMF TRAV13-2*01 TRAJ31*01 CASSSDGNSPLHF TRBV6-5*01 TRBJ1-6*01 HLA-A*01:01 B2M MHCI LTSLTILQLY G6PC2 HomoSapiens PMID:34811538 tetramer-sort yes amplicon-seq Naive T cells tet_neg chip0516_669471 PBMC +12558 CAMREQRDSNYQLIW TRAV14/DV4*01 TRAJ33*01 HLA-A*02:01 B2M MHCI GLCTLVAML BLMF1 EBV PMID:34811538 tetramer-sort yes amplicon-seq effector memory T cells healthy healthy_6 chip0516_340663 PBMC +12559 CAVALSSKSTF TRAV8-3*01 TRAJ27*01 CASSGDGMNTEAFF TRBV10-2*01 TRBJ1-1*01 HLA-A*02:01 B2M MHCI CLGGLLTMV LMP2A EBV PMID:34811538 tetramer-sort yes amplicon-seq effector memory T cells healthy healthy_6 chip0516_158480 PBMC +12561 CAMKDFQKLVF TRAV8-1*01 TRAJ8*01 CASSFAPSYEQYF TRBV13*01 TRBJ2-7*01 HLA-A*02:01 B2M MHCI YVLDHLIVV BRLF1 EBV PMID:34811538 tetramer-sort yes amplicon-seq effector memory T cells tet_neg chip0516_122152 PBMC +12562 CILPLAGGTSYGKLTF TRAV26-2*01 TRAJ52*01 CASSYFVGQVVNTEAFF TRBV6-2*01,TRBV6-3*01 TRBJ1-1*01 HLA-B*08:01 B2M MHCI FLRGRAYGL EBNA3A EBV PMID:34811538 tetramer-sort yes amplicon-seq effector memory T cells healthy healthy_8 chip0516_54755 PBMC +12563 CAMRDSTGGSNYKLTF TRAV14/DV4*01 TRAJ53*01 CASSSVPDMNTEAFF TRBV19*01 TRBJ1-1*01 HLA-B*08:01 B2M MHCI RPIIRPATL NP InfluenzaA PMID:34811538 tetramer-sort yes amplicon-seq transitional T cells between effector and memory populations healthy healthy_8 chip0516_316663 PBMC +12564 CASSLGQAYEQYF TRBV7-8*01 TRBJ2-7*01 HLA-B*08:01 B2M MHCI FLRGRAYGL EBNA3A EBV PMID:34811538 tetramer-sort yes amplicon-seq effector memory T cells healthy healthy_8 chip0516_754540 PBMC +12566 CAVLMDSNYQLIW TRAV21*01 TRAJ33*01 CASSGDGMNTEAFF TRBV10-2*01 TRBJ1-1*01 HLA-A*02:01 B2M MHCI CLGGLLTMV LMP2A EBV PMID:34811538 tetramer-sort yes amplicon-seq effector memory T cells healthy healthy_6 chip0516_816913 PBMC +12567 CLVGDRAGNMLTF TRAV4*01 TRAJ39*01 CASQGFGNTEAFF TRBV9*01 TRBJ1-1*01 HLA-B*08:01 B2M MHCI RPIIRPATL NP InfluenzaA PMID:34811538 tetramer-sort yes amplicon-seq effector memory T cells tet_neg chip0516_789447 PBMC +12569 CAMRASLGYALNF TRAV14/DV4*01 TRAJ41*01 CASSQGERTYNEQFF TRBV4-3*01 TRBJ2-1*01 HLA-B*08:01 B2M MHCI MMIARFKM GAD2 HomoSapiens PMID:34811538 tetramer-sort yes amplicon-seq Naive T cells healthy healthy_10 chip0516_327828 PBMC +12570 CAVQGFRDDKIIF TRAV20*01 TRAJ30*01 CASSPRANTGELFF TRBV27*01 TRBJ2-2*01 HLA-A*02:01 B2M MHCI GILGFVFTL M1 InfluenzaA PMID:34811538 tetramer-sort yes amplicon-seq central memory T cells tet_neg chip0516_32804 PBMC +12571 CIVRESNNDMRF TRAV26-1*01 TRAJ43*01 CASSLTGPDNTEAFF TRBV4-1*01 TRBJ1-1*01 HLA-B*08:01 B2M MHCI RAKFKQLL BZLF1 EBV PMID:34811538 tetramer-sort yes amplicon-seq effector memory T cells healthy healthy_8 chip0516_692213 PBMC +12572 CAVRtg??aaKIIF TRAV8-1*01 TRAJ30*01 CASSSGQGDNEQFF TRBV11-2*01 TRBJ2-1*01 HLA-A*02:01 B2M MHCI GLCTLVAML BLMF1 EBV PMID:34811538 tetramer-sort yes amplicon-seq effector T cells healthy healthy_6 chip0516_516055 PBMC +12573 CASSIFSVNEQFF TRBV19*01 TRBJ2-1*01 HLA-A*02:01 B2M MHCI GILGFVFTL M1 InfluenzaA PMID:34811538 tetramer-sort yes amplicon-seq transitional T cells between effector and memory populations healthy healthy_7 chip0516_246373 PBMC +12574 CAGGGSSNTGKTNL TRAV27*01 TRAJ37*01 CASSIRSSYEQYF TRBV19*01 TRBJ2-7*01 HLA-A*02:01 B2M MHCI GILGFVFTL M1 InfluenzaA PMID:34811538 tetramer-sort yes amplicon-seq transitional T cells between effector and memory populations healthy healthy_7 chip0516_708696 PBMC +12575 CILPLAGGTSYGKLTF TRAV26-2*01 TRAJ52*01 CASSSAGGVAGGEQFF TRBV7-9*01 TRBJ2-1*01 HLA-B*08:01 B2M MHCI FLRGRAYGL EBNA3A EBV PMID:34811538 tetramer-sort yes amplicon-seq effector memory T cells healthy healthy_8 chip0516_354554 PBMC +12576 CALHPPTDGQKLLF TRAV16*01 TRAJ16*01 CASSLSRSSYNSPLHF TRBV5-1*01 TRBJ1-6*01 HLA-B*08:01 B2M MHCI MALWMRLL INS HomoSapiens PMID:34811538 tetramer-sort yes amplicon-seq central memory T cells healthy healthy_8 chip0516_364494 PBMC +12577 CASSDAAIANTGELFF TRBV2*01 TRBJ2-2*01 HLA-B*08:01 B2M MHCI FLRGRAYGL EBNA3A EBV PMID:34811538 tetramer-sort yes amplicon-seq transitional T cells between effector and memory populations tet_neg chip0516_530874 PBMC +12578 CASSLRAGGPIDTQYF TRBV5-4*01 TRBJ2-3*01 HLA-A*01:01 B2M MHCI HSNLNDATY NP InfluenzaA PMID:34811538 tetramer-sort yes amplicon-seq Naive T cells healthy healthy_9 chip0516_188377 PBMC +12579 YAENNGHEGNMVTF TRAV13-2*01 TRAJ39*01 HLA-B*08:01 B2M MHCI HLKRNIVV GFAP HomoSapiens PMID:34811538 tetramer-sort yes amplicon-seq Naive T cells healthy healthy_9 chip0516_166719 PBMC +12580 CILPLAGGTSYGKLTF TRAV26-2*01 TRAJ52*01 CASSSGQAYEQYF TRBV7-8*01 TRBJ2-7*01 HLA-B*08:01 B2M MHCI FLRGRAYGL EBNA3A EBV PMID:34811538 tetramer-sort yes amplicon-seq effector memory T cells tet_neg chip0516_858318 PBMC +12582 CALSEQDNQGGKLIF TRAV19*01 TRAJ23*01 CASSQEGRPMVQYF TRBV14*01 TRBJ2-7*01 HLA-A*01:01 B2M MHCI QQDKHYDLSY GAD2 HomoSapiens PMID:34811538 tetramer-sort yes amplicon-seq transitional T cells between effector and memory populations healthy healthy_8 chip0516_812659 PBMC +12583 CAGGHGGSQGNLIF TRAV25*01 TRAJ42*01 CASSIRSVDTQYF TRBV19*01 TRBJ2-3*01 HLA-A*02:01 B2M MHCI GILGFVFTL M1 InfluenzaA PMID:34811538 tetramer-sort yes amplicon-seq transitional T cells between effector and memory populations healthy healthy_7 chip0516_813364 PBMC +12585 CASSAWTGRTGELFF TRBV7-9*01 TRBJ2-2*01 HLA-B*08:01 B2M MHCI CPLSKILL LMP2A EBV PMID:34811538 tetramer-sort yes amplicon-seq Naive T cells healthy healthy_8 chip0516_438044 PBMC +12586 CASSTQTAPDDTQYF TRBV7-9*01 TRBJ2-3*01 HLA-B*08:01 B2M MHCI RAKFKQLL BZLF1 EBV PMID:34811538 tetramer-sort yes amplicon-seq effector memory T cells healthy healthy_8 chip0516_510762 PBMC +12587 CASSPAEPSGYTF TRBV5-6*01 TRBJ1-2*01 HLA-A*02:01 B2M MHCI MVWESGCTV PTPRN HomoSapiens PMID:34811538 tetramer-sort yes amplicon-seq Naive T cells healthy healthy_7 chip0516_622327 PBMC +12588 CASSSGQAYEQYF TRBV7-8*01 TRBJ2-7*01 HLA-B*08:01 B2M MHCI FLRGRAYGL EBNA3A EBV PMID:34811538 tetramer-sort yes amplicon-seq effector memory T cells healthy healthy_8 chip0516_498707 PBMC +12589 CAVALSSKSTF TRAV8-3*01 TRAJ27*01 HLA-A*02:01 B2M MHCI CLGGLLTMV LMP2A EBV PMID:34811538 tetramer-sort yes amplicon-seq effector memory T cells healthy healthy_6 chip0516_794728 PBMC +12591 CAMREGPGSNYQLIW TRAV14/DV4*01 TRAJ33*01 CASSLLGFGMNTEAFF TRBV27*01 TRBJ1-1*01 HLA-B*08:01 B2M MHCI YAKWKLCSA ZNT8 HomoSapiens PMID:34811538 tetramer-sort yes amplicon-seq Naive T cells healthy healthy_8 chip0516_136486 PBMC +12592 CALSEEIYNQGGKLIF TRAV19*01 TRAJ23*01 CASSLAGTGYNEQFF TRBV7-2*01 TRBJ2-1*01 HLA-B*08:01 B2M MHCI QAKWRLQTL EBNA3A EBV PMID:34811538 tetramer-sort yes amplicon-seq effector T cells healthy healthy_8 chip0516_572771 PBMC +12594 CAMRESNTGGFKTIF TRAV14/DV4*01 TRAJ9*01 CASSQVSGYEQYF TRBV4-2*01 TRBJ2-7*01 HLA-A*02:01 B2M MHCI LLFNILGGWV NS4B HCV PMID:34811538 tetramer-sort yes amplicon-seq Naive T cells healthy healthy_7 chip0516_467019 PBMC +12595 CAVTLTLSSGAGRYLLTF TRAV36/DV7*01 TRAJ28*01 CASSLMGTGGLSEKLFF TRBV28*01 TRBJ1-4*01 HLA-B*08:01 B2M MHCI QAKWRLQTL EBNA3A EBV PMID:34811538 tetramer-sort yes amplicon-seq effector memory T cells healthy healthy_8 chip0516_194383 PBMC +12596 CAYYSGDSGYALNF TRAV38-1*01 TRAJ41*01 CASSPSRHQPQHF TRBV11-2*01 TRBJ1-5*01 HLA-A*02:01 B2M MHCI KLQVFLIVL IAPP HomoSapiens PMID:34811538 tetramer-sort yes amplicon-seq Naive T cells healthy healthy_7 chip0516_26929 PBMC +12597 CLLPLAGGTSYGKLTF TRAV26-2*01,TRAV4*01 TRAJ52*01 CASSSGQAYEQYF TRBV7-8*01 TRBJ2-7*01 HLA-B*08:01 B2M MHCI FLRGRAYGL EBNA3A EBV PMID:34811538 tetramer-sort yes amplicon-seq effector memory T cells healthy healthy_8 chip0516_867945 PBMC +12598 CALSEAYGNNRLAF TRAV19*01 TRAJ7*01 CASSERTSGGWNEQFF TRBV6-1*01 TRBJ2-1*01 HLA-B*08:01 B2M MHCI QAKWRLQTL EBNA3A EBV PMID:34811538 tetramer-sort yes amplicon-seq Naive T cells healthy healthy_10 chip0516_771624 PBMC +12599 CAMRE*ATGGGADGLTF TRAV14/DV4*01 TRAJ45*01 CSARVGAETGDEPTDTQYF TRBV20-1*01 TRBJ2-3*01 HLA-B*08:01 B2M MHCI SRKHKWKL GAD2 HomoSapiens PMID:34811538 tetramer-sort yes amplicon-seq Naive T cells healthy healthy_8 chip0516_624458 PBMC +12600 CILPLAGRTRYGKLTL TRAV26-2*01 TRAJ52*01 CASSLGQAYEQYF TRBV7-8*01 TRBJ2-7*01 HLA-B*08:01 B2M MHCI FLRGRAYGL EBNA3A EBV PMID:34811538 tetramer-sort yes amplicon-seq effector memory T cells healthy healthy_8 chip0516_25899 PBMC +12601 CAVTLTLYSGAGSYQLTF TRAV21*01 TRAJ28*01 CASSLMGTGGLSEKLFF TRBV28*01 TRBJ1-4*01 HLA-B*08:01 B2M MHCI QAKWRLQTL EBNA3A EBV PMID:34811538 tetramer-sort yes amplicon-seq effector memory T cells healthy healthy_8 chip0516_112549 PBMC +12602 CASSGDGMNTEAFF TRBV10-2*01 TRBJ1-1*01 HLA-A*02:01 B2M MHCI CLGGLLTMV LMP2A EBV PMID:34811538 tetramer-sort yes amplicon-seq effector memory T cells healthy healthy_6 chip0516_333509 PBMC +12603 CAMAISNFGNEKLTF TRAV12-3*01 TRAJ48*01 CASSNQGQAKANYGYTF TRBV11-2*01 TRBJ1-2*01 HLA-A*02:01 B2M MHCI LLAGIGTVPI PGT HomoSapiens PMID:34811538 tetramer-sort yes amplicon-seq Naive T cells healthy healthy_6 chip0516_146408 PBMC +12604 CAFTHNAGNMLTF TRAV38-1*01 TRAJ39*01 CASSLVYSSIQTQYF TRBV7-9*01 TRBJ2-5*01 HLA-A*02:01 B2M MHCI LLFNILGGWV NS4B HCV PMID:34811538 tetramer-sort yes amplicon-seq central memory T cells healthy healthy_7 chip0516_392686 PBMC +12605 CATYSGGGADGLTF TRAV21*01 TRAJ45*01 CASSLRANEQFF TRBV4-1*01 TRBJ2-1*01 HLA-B*08:01 B2M MHCI EAKQKGFVPF GAD2 HomoSapiens PMID:34811538 tetramer-sort yes amplicon-seq Naive T cells healthy healthy_8 chip0516_653998 PBMC +12606 CILPLAGGTSYGKLTF TRAV26-2*01 TRAJ52*01 CASSLGQAYEQYF TRBV7-8*01 TRBJ2-7*01 HLA-B*08:01 B2M MHCI FLRGRAYGL EBNA3A EBV PMID:34811538 tetramer-sort yes amplicon-seq effector memory T cells healthy healthy_8 chip0516_420155 PBMC +12607 CAGQLGSWGKLQF TRAV35*01 TRAJ24*01 CAISGRSGVDTGELFF TRBV10-3*01 TRBJ2-2*01 HLA-A*01:01 B2M MHCI STNVGSNTY IAPP HomoSapiens PMID:34811538 tetramer-sort yes amplicon-seq Naive T cells healthy healthy_8 chip0516_807167 PBMC +12609 CAGYSGGGADGLTF TRAV12-2*01 TRAJ45*01 HLA-A*02:01 B2M MHCI ALGIGILTV MART1 HomoSapiens PMID:34811538 tetramer-sort yes amplicon-seq Naive T cells healthy healthy_6 chip0516_329172 PBMC +12610 CAASEGYGNKLVF TRAV29/DV5*01 TRAJ47*01 CASSGSRQETQYF TRBV6-2*01,TRBV6-3*01 TRBJ2-5*01 HLA-B*08:01 B2M MHCI TLKKMREI GAD2 HomoSapiens PMID:34811538 tetramer-sort yes amplicon-seq Naive T cells healthy healthy_10 chip0516_24243 PBMC +12611 CAALDDKIIF TRAV12-2*01 TRAJ30*01 CSASVQTSGLGTQYF TRBV20-1*01 TRBJ2-5*01 HLA-A*02:01 B2M MHCI LLAGIGTVPI PGT HomoSapiens PMID:34811538 tetramer-sort yes amplicon-seq Naive T cells healthy healthy_7 chip0516_412026 PBMC +12613 CAPLPANFGNEKLTF TRAV12-3*01 TRAJ48*01 CSARDKEDDYGYTF TRBV20-1*01 TRBJ1-2*01 HLA-A*02:01 B2M MHCI LLAGIGTVPI PGT HomoSapiens PMID:34811538 tetramer-sort yes amplicon-seq Naive T cells healthy healthy_7 chip0516_508164 PBMC +12614 CASSSSGQSYSPLHF TRBV5-6*01 TRBJ1-6*01 HLA-B*08:01 B2M MHCI MGILKLQVF IAPP HomoSapiens PMID:34811538 tetramer-sort yes amplicon-seq Naive T cells healthy healthy_10 chip0516_384954 PBMC +12616 CAGAHGSSNTGKLIF TRAV27*01 TRAJ37*01 CASSSRSAYEQYF TRBV19*01 TRBJ2-7*01 HLA-A*02:01 B2M MHCI GILGFVFTL M1 InfluenzaA PMID:34811538 tetramer-sort yes amplicon-seq transitional T cells between effector and memory populations healthy healthy_7 chip0516_34623 PBMC +12617 CASSSWGLIYEQYF TRBV19*01 TRBJ2-7*01 HLA-A*02:01 B2M MHCI YLLLRVLNI IGRP HomoSapiens PMID:34811538 tetramer-sort yes amplicon-seq Naive T cells healthy healthy_7 chip0516_681217 PBMC +12618 CALNRGNNARLMF TRAV19*01 TRAJ31*01 CASWGGTEAFF TRBV19*01 TRBJ1-1*01 HLA-A*01:01 B2M MHCI LTSLTILQLY G6PC2 HomoSapiens PMID:34811538 tetramer-sort yes amplicon-seq Naive T cells healthy healthy_8 chip0516_271447 PBMC +12619 CAVGTRF TRAV12-2*01 TRAJ43*01 HLA-A*02:01 B2M MHCI LLAGIGTVPI PGT HomoSapiens PMID:34811538 tetramer-sort yes amplicon-seq effector T cells healthy healthy_7 chip0516_554605 PBMC +12620 CILPLAGGTSYGKLTF TRAV26-2*01 TRAJ52*01 CASSLGQAYEQYF TRBV7-8*01 TRBJ2-7*01 HLA-B*08:01 B2M MHCI FLRGRAYGL EBNA3A EBV PMID:34811538 tetramer-sort yes amplicon-seq effector memory T cells healthy healthy_8 chip0516_653437 PBMC +12622 CAARRSGGYQKVTF TRAV13-1*01 TRAJ13*01 CAISDDGNTEAFF TRBV10-3*01 TRBJ1-1*01 HLA-B*08:01 B2M MHCI YAYAKWKL ZNT8 HomoSapiens PMID:34811538 tetramer-sort yes amplicon-seq Naive T cells healthy healthy_8 chip0516_180687 PBMC +12623 CASSIGVYGYTF TRBV19*01 TRBJ1-2*01 HLA-A*02:01 B2M MHCI GILGFVFTL M1 InfluenzaA PMID:34811538 tetramer-sort yes amplicon-seq transitional T cells between effector and memory populations healthy healthy_7 chip0516_768145 PBMC +12624 CILPLAGGTSYGKLTF TRAV26-2*01 TRAJ52*01 HLA-B*08:01 B2M MHCI FLRGRAYGL EBNA3A EBV PMID:34811538 tetramer-sort yes amplicon-seq effector memory T cells healthy healthy_8 chip0516_425965 PBMC +12625 CAGGGGSSTLTF TRAV27*01 TRAJ11*01 HLA-A*02:01 B2M MHCI LNIDLLWSV IGRP HomoSapiens PMID:34811538 tetramer-sort yes amplicon-seq Naive T cells healthy healthy_7 chip0516_407259 PBMC +12626 CAMRDSTGGSNYKLTF TRAV14/DV4*01 TRAJ53*01 HLA-B*08:01 B2M MHCI RPIIRPATL NP InfluenzaA PMID:34811538 tetramer-sort yes amplicon-seq transitional T cells between effector and memory populations healthy healthy_8 chip0516_308701 PBMC +12627 CGTADTGGFKTIF TRAV30*01 TRAJ9*01 CASSIRGLSSYNEQFF TRBV28*01 TRBJ2-1*01 HLA-B*08:01 B2M MHCI YAKWKLCSA ZNT8 HomoSapiens PMID:34811538 tetramer-sort yes amplicon-seq Naive T cells healthy healthy_10 chip0516_456288 PBMC +12629 CILPLAGGTSYGKLTF TRAV26-2*01 TRAJ52*01 HLA-B*08:01 B2M MHCI FLRGRAYGL EBNA3A EBV PMID:34811538 tetramer-sort yes amplicon-seq central memory T cells healthy healthy_8 chip0516_258145 PBMC +12630 CASSLGQAYEQYF TRBV7-8*01 TRBJ2-7*01 HLA-B*08:01 B2M MHCI FLRGRAYGL EBNA3A EBV PMID:34811538 tetramer-sort yes amplicon-seq effector T cells healthy healthy_8 chip0516_848595 PBMC +12631 CAAPESEGGKLIF TRAV23/DV6*01 TRAJ23*01 HLA-A*02:01 B2M MHCI GILGFVFTL M1 InfluenzaA PMID:34811538 tetramer-sort yes amplicon-seq transitional T cells between effector and memory populations healthy healthy_7 chip0516_181296 PBMC +12632 CILPLAGGTSYGKLTF TRAV26-2*01 TRAJ52*01 CASSLGQAYEQYF TRBV7-8*01 TRBJ2-7*01 HLA-B*08:01 B2M MHCI FLRGRAYGL EBNA3A EBV PMID:34811538 tetramer-sort yes amplicon-seq effector memory T cells healthy healthy_8 chip0516_712311 PBMC +12633 CAVLMDSNYQLIW TRAV21*01 TRAJ33*01 CASSGDGMNTEAFF TRBV10-2*01 TRBJ1-1*01 HLA-A*02:01 B2M MHCI CLGGLLTMV LMP2A EBV PMID:34811538 tetramer-sort yes amplicon-seq effector memory T cells healthy healthy_6 chip0516_765064 PBMC +12634 CAVLKVc?tARPLPF TRAV2*01 TRAJ22*01 CASSQDRSGTSRGNIQYF TRBV3-1*01 TRBJ2-4*01 HLA-A*02:01 B2M MHCI ALGDLFQSI ZNT8 HomoSapiens PMID:34811538 tetramer-sort yes amplicon-seq Naive T cells healthy healthy_7 chip0516_105711 PBMC +12635 CAMSLLGF TRAV14/DV4*01 TRAJ37*01,TRAJ11*01 CASSTRDRNTEAFF TRBV5-5*01 TRBJ1-1*01 HLA-B*08:01 B2M MHCI WPTVRERM Nef HIV-1 PMID:34811538 tetramer-sort yes amplicon-seq Naive T cells healthy healthy_8 chip0516_71502 PBMC +12636 CILPLAGGTSYGKLTF TRAV26-2*01 TRAJ52*01 CASSSGQAYEQYF TRBV7-8*01 TRBJ2-7*01 HLA-B*08:01 B2M MHCI FLRGRAYGL EBNA3A EBV PMID:34811538 tetramer-sort yes amplicon-seq effector memory T cells healthy healthy_8 chip0516_748886 PBMC +12637 CIVRLLAct?SNTGKLIF TRAV26-1*01 TRAJ37*01 HLA-A*02:01 B2M MHCI FLYALALLL LMP2 EBV PMID:34811538 tetramer-sort yes amplicon-seq effector memory T cells healthy healthy_6 chip0516_442115 PBMC +12639 CAVRAac?GHPFYF TRAV8-4*01 TRAJ49*01 HLA-B*08:01 B2M MHCI MMIARFKM GAD2 HomoSapiens PMID:34811538 tetramer-sort yes amplicon-seq Naive T cells healthy healthy_9 chip0516_347685 PBMC +12640 CATEGDSGYSTLTF TRAV17*01 TRAJ11*01 HLA-A*02:01 B2M MHCI FLYALALLL LMP2 EBV PMID:34811538 tetramer-sort yes amplicon-seq transitional T cells between effector and memory populations healthy healthy_6 chip0516_327121 PBMC +12641 CILPLAGGTSYGKLTF TRAV26-2*01 TRAJ52*01 CASSLGQAYEQYF TRBV7-8*01 TRBJ2-7*01 HLA-B*08:01 B2M MHCI FLRGRAYGL EBNA3A EBV PMID:34811538 tetramer-sort yes amplicon-seq effector memory T cells healthy healthy_8 chip0516_802044 PBMC +12642 CAASISTGANSKLTF TRAV13-1*01 TRAJ56*01 CASIWGSRQFF TRBV5-6*01 TRBJ2-1*01 HLA-A*02:01 B2M MHCI PLTFGWCYKL NEF InfluenzaA PMID:34811538 tetramer-sort yes amplicon-seq natural killer-like T cells healthy healthy_7 chip0516_14164 PBMC +12643 CSAPRTGPYEQYF TRBV20-1*01 TRBJ2-7*01 HLA-A*01:01 B2M MHCI HSNLNDATY NP InfluenzaA PMID:34811538 tetramer-sort yes amplicon-seq effector T cells tet_neg chip0516_789948 PBMC +12644 SILPLAGGPSYGKLTY TRAV26-2*01 TRAJ52*01 HLA-B*08:01 B2M MHCI FLRGRAYGL EBNA3A EBV PMID:34811538 tetramer-sort yes amplicon-seq central memory T cells healthy healthy_8 chip0516_204593 PBMC +12645 CASSLVVLAGSTDTQYF TRBV11-2*01 TRBJ2-3*01 HLA-B*08:01 B2M MHCI RAKFKQLL BZLF1 EBV PMID:34811538 tetramer-sort yes amplicon-seq effector memory T cells healthy healthy_8 chip0516_191403 PBMC +12646 CASSDVLMEGLRHTEAFF TRBV6-4*01 TRBJ1-1*01 HLA-B*08:01 B2M MHCI RPIIRPATL NP InfluenzaA PMID:34811538 tetramer-sort yes amplicon-seq transitional T cells between effector and memory populations healthy healthy_8 chip0516_73117 PBMC +12647 CILPLAGGTSYGKLTF TRAV26-2*01 TRAJ52*01 CASSLGQAYEQYF TRBV7-8*01 TRBJ2-7*01 HLA-B*08:01 B2M MHCI FLRGRAYGL EBNA3A EBV PMID:34811538 tetramer-sort yes amplicon-seq transitional T cells between effector and memory populations healthy healthy_8 chip0516_336155 PBMC +12648 CAATLTMga?ESQGNLIF TRAV13-1*01 TRAJ42*01 HLA-B*08:01 B2M MHCI SVRAAFVHAL ZNT8 HomoSapiens PMID:34811538 tetramer-sort yes amplicon-seq Naive T cells healthy healthy_8 chip0516_576895 PBMC +12650 CASSLMGTGGLSEKLFF TRBV28*01 TRBJ1-4*01 HLA-B*08:01 B2M MHCI QAKWRLQTL EBNA3A EBV PMID:34811538 tetramer-sort yes amplicon-seq transitional T cells between effector and memory populations healthy healthy_8 chip0516_262308 PBMC +12651 CILPLAGGTSSGKLTF TRAV26-2*01 TRAJ52*01 HLA-B*08:01 B2M MHCI FLRGRAYGL EBNA3A EBV PMID:34811538 tetramer-sort yes amplicon-seq effector memory T cells healthy healthy_8 chip0516_38708 PBMC +12653 CAVNSGNDMRF TRAV8-1*01 TRAJ43*01 CAWVELGFSYNEQFF TRBV30*01 TRBJ2-1*01 HLA-A*02:01 B2M MHCI EAAGIGILTV MART1 HomoSapiens PMID:34811538 tetramer-sort yes amplicon-seq Naive T cells healthy healthy_7 chip0516_178467 PBMC +12654 CAMRERTYNFNKFYF TRAV14/DV4*01 TRAJ21*01 CASNRGSTDTQYF TRBV9*01 TRBJ2-3*01 HLA-B*08:01 B2M MHCI YAFLHATDL GAD2 HomoSapiens PMID:34811538 tetramer-sort yes amplicon-seq Naive T cells healthy healthy_8 chip0516_827770 PBMC +12655 CASIVARDKQYF TRBV27*01 TRBJ2-7*01 HLA-A*01:01 B2M MHCI CTELKLSDY NP InfluenzaA PMID:34811538 tetramer-sort yes amplicon-seq effector memory T cells healthy healthy_8 chip0516_678176 PBMC +12656 CASSLEGETQYF TRBV7-9*01 TRBJ2-5*01 HLA-A*01:01 B2M MHCI CTELKLSDY NP InfluenzaA PMID:34811538 tetramer-sort yes amplicon-seq Naive T cells healthy healthy_9 chip0516_441522 PBMC +12658 CAVSSRg?cRRALTF TRAV8-6*01 TRAJ5*01 CASSIRGPNTEAFF TRBV19*01 TRBJ1-1*01 HLA-B*08:01 B2M MHCI RPIIRPATL NP InfluenzaA PMID:34811538 tetramer-sort yes amplicon-seq Naive T cells healthy healthy_8 chip0516_47084 PBMC +12659 CAVTLTLYSGAGSYQLTF TRAV21*01 TRAJ28*01 CASSLMGTGGLSEKLFF TRBV28*01 TRBJ1-4*01 HLA-B*08:01 B2M MHCI QAKWRLQTL EBNA3A EBV PMID:34811538 tetramer-sort yes amplicon-seq central memory T cells healthy healthy_8 chip0516_705861 PBMC +12660 CAMSEGGSNYKLTF TRAV14/DV4*01 TRAJ53*01 HLA-B*08:01 B2M MHCI RPIIRPATL NP InfluenzaA PMID:34811538 tetramer-sort yes amplicon-seq transitional T cells between effector and memory populations healthy healthy_8 chip0516_253710 PBMC +12661 CILPLAGGTSYGKLTF TRAV26-2*01 TRAJ52*01 CASSLGQAYEQYF TRBV7-8*01 TRBJ2-7*01 HLA-B*08:01 B2M MHCI FLRGRAYGL EBNA3A EBV PMID:34811538 tetramer-sort yes amplicon-seq effector memory T cells healthy healthy_8 chip0516_583809 PBMC +12662 CVVIPRAGDMRF TRAV8-2*01 TRAJ43*01 HLA-B*08:01 B2M MHCI YAYAKWKL ZNT8 HomoSapiens PMID:34811538 tetramer-sort yes amplicon-seq effector memory T cells healthy healthy_8 chip0516_717824 PBMC +12663 CASSSEETGSNQPQHF TRBV7-9*01 TRBJ1-5*01 HLA-B*08:01 B2M MHCI QAKWRLQTL EBNA3A EBV PMID:34811538 tetramer-sort yes amplicon-seq effector memory T cells healthy healthy_10 chip0516_213954 PBMC +12665 CILPLAGGTSYGKLTF TRAV26-2*01 TRAJ52*01 HLA-B*08:01 B2M MHCI FLRGRAYGL EBNA3A EBV PMID:34811538 tetramer-sort yes amplicon-seq effector memory T cells healthy healthy_8 chip0516_828683 PBMC +12666 CAGPYSGGGADGLTF TRAV35*01 TRAJ45*01 HLA-A*02:01 B2M MHCI ALWMRLLPL PREINS HomoSapiens PMID:34811538 tetramer-sort yes amplicon-seq Naive T cells healthy healthy_6 chip0516_125383 PBMC +12668 CSARDRPGHPDNEQFF TRBV20-1*01 TRBJ2-1*01 HLA-B*08:01 B2M MHCI QAKWRLQTL EBNA3A EBV PMID:34811538 tetramer-sort yes amplicon-seq effector T cells healthy healthy_9 chip0516_430911 PBMC +12669 CASSPERQTNYGYTF TRBV5-1*01 TRBJ1-2*01 HLA-B*08:01 B2M MHCI AAKMYAFTL ZNT8 HomoSapiens PMID:34811538 tetramer-sort yes amplicon-seq Naive T cells healthy healthy_8 chip0516_329096 PBMC +12670 CASSLGQAYEQYF TRBV7-8*01 TRBJ2-7*01 HLA-B*08:01 B2M MHCI FLRGRAYGL EBNA3A EBV PMID:34811538 tetramer-sort yes amplicon-seq effector memory T cells healthy healthy_8 chip0516_686831 PBMC +12671 CAMKISNFGNEKLTF TRAV12-3*01 TRAJ48*01 CASSLPSWEDGYQETQYF TRBV14*01 TRBJ2-5*01 HLA-A*02:01 B2M MHCI LLAGIGTVPI PGT HomoSapiens PMID:34811538 tetramer-sort yes amplicon-seq Naive T cells healthy healthy_6 chip0516_178488 PBMC +12672 CVVMSNGGSQGNLIF TRAV12-1*01 TRAJ42*01 CAISGTPGDTQYF TRBV10-3*01 TRBJ2-3*01 HLA-A*01:01 B2M MHCI CTELKLSDY NP InfluenzaA PMID:34811538 tetramer-sort yes amplicon-seq Naive T cells healthy healthy_9 chip0516_213467 PBMC +12675 CAVALSSKSTF TRAV8-3*01 TRAJ27*01 CASSGDGMNTEAFF TRBV10-2*01 TRBJ1-1*01 HLA-A*02:01 B2M MHCI CLGGLLTMV LMP2A EBV PMID:34811538 tetramer-sort yes amplicon-seq effector memory T cells healthy healthy_6 chip0516_61336 PBMC +12676 CAASPPKLIF TRAV29/DV5*01 TRAJ34*01 CASSSLVDNEQFF TRBV7-3*01 TRBJ2-1*01 HLA-B*08:01 B2M MHCI RAKFKQLL BZLF1 EBV PMID:34811538 tetramer-sort yes amplicon-seq effector T cells healthy healthy_9 chip0516_535772 PBMC +12677 CVFDNYGQNFVF TRAV12-1*01 TRAJ26*01 CASSVGSGYEQYF TRBV9*01 TRBJ2-7*01 HLA-A*01:01 B2M MHCI LTSLTILQLY G6PC2 HomoSapiens PMID:34811538 tetramer-sort yes amplicon-seq Naive T cells healthy healthy_8 chip0516_409297 PBMC +12678 CILPLAGGTSYGKLTS TRAV26-2*01 TRAJ52*01 HLA-B*08:01 B2M MHCI FLRGRAYGL EBNA3A EBV PMID:34811538 tetramer-sort yes amplicon-seq central memory T cells healthy healthy_8 chip0516_280151 PBMC +12679 CALSSGTASKLTF TRAV19*01 TRAJ44*01 HLA-B*08:01 B2M MHCI ELRSRYWAI NP InfluenzaA PMID:34811538 tetramer-sort yes amplicon-seq Naive T cells healthy healthy_8 chip0516_438860 PBMC +12680 CAFIDSNYQLIW TRAV24*01 TRAJ33*01 HLA-A*02:01 B2M MHCI LLPPLLEHL PTPRN HomoSapiens PMID:34811538 tetramer-sort yes amplicon-seq central memory T cells healthy healthy_6 chip0516_236978 PBMC +12681 CANSLGQAYEQYF TRBV7-8*01 TRBJ2-7*01 HLA-B*08:01 B2M MHCI FLRGRAYGL EBNA3A EBV PMID:34811538 tetramer-sort yes amplicon-seq effector memory T cells healthy healthy_8 chip0516_788319 PBMC +12682 CANSLRET??aQA*NIQYF TRBV7-2*01 TRBJ2-4*01 HLA-A*02:01 B2M MHCI GLCTLVAML BLMF1 EBV PMID:34811538 tetramer-sort yes amplicon-seq effector T cells healthy healthy_6 chip0516_716799 PBMC +12683 CASSGDRMNTEAFF TRBV10-2*01 TRBJ1-1*01 HLA-A*02:01 B2M MHCI CLGGLLTMV LMP2A EBV PMID:34811538 tetramer-sort yes amplicon-seq effector memory T cells healthy healthy_6 chip0516_227713 PBMC +12685 CAGNYGGSQGNLIF TRAV25*01 TRAJ42*01 CASSARSTGELFF TRBV19*01 TRBJ2-2*01 HLA-A*02:01 B2M MHCI GILGFVFTL M1 InfluenzaA PMID:34811538 tetramer-sort yes amplicon-seq transitional T cells between effector and memory populations healthy healthy_7 chip0516_452918 PBMC +12686 CAFEADTGNQFYF TRAV24*01 TRAJ49*01 CASYSTSGGQETQYF TRBV2*01 TRBJ2-5*01 HLA-A*01:01 B2M MHCI CTELKLSDY NP InfluenzaA PMID:34811538 tetramer-sort yes amplicon-seq transitional T cells between effector and memory populations healthy healthy_8 chip0516_12662 PBMC +12687 CAVRGNNDMRF TRAV21*01 TRAJ43*01 CASSAGTLQETQYF TRBV6-2*01,TRBV6-3*01 TRBJ2-5*01 HLA-A*02:01 B2M MHCI CLGGLLTMV LMP2A EBV PMID:34811538 tetramer-sort yes amplicon-seq Naive T cells healthy healthy_6 chip0516_391347 PBMC +12688 CASSPLGGADGYTF TRBV6-1*01 TRBJ1-2*01 HLA-A*02:01 B2M MHCI FLYALALLL LMP2 EBV PMID:34811538 tetramer-sort yes amplicon-seq effector memory T cells healthy healthy_6 chip0516_230642 PBMC +12689 CAVLMDSNYQLIW TRAV12-3*01 TRAJ33*01 CASSGDGMNTEAFL TRBV10-2*01 TRBJ1-1*01 HLA-A*02:01 B2M MHCI CLGGLLTMV LMP2A EBV PMID:34811538 tetramer-sort yes amplicon-seq effector memory T cells healthy healthy_6 chip0516_374178 PBMC +12690 CAVSDLPDSGNTPLVF TRAV8-4*01 TRAJ29*01 HLA-A*02:01 B2M MHCI IQATVMIIV ZNT8 HomoSapiens PMID:34811538 tetramer-sort yes amplicon-seq Naive T cells healthy healthy_6 chip0516_844133 PBMC +12692 CASSGDGMNTEAFF TRBV10-2*01 TRBJ1-1*01 HLA-A*02:01 B2M MHCI CLGGLLTMV LMP2A EBV PMID:34811538 tetramer-sort yes amplicon-seq effector memory T cells healthy healthy_6 chip0516_479028 PBMC +12693 CAVQGNTDKLIF TRAV20*01 TRAJ34*01 CASSYGTGTDTQYF TRBV2*01 TRBJ2-3*01 HLA-A*01:01 B2M MHCI HSNLNDATY NP InfluenzaA PMID:34811538 tetramer-sort yes amplicon-seq Naive T cells tet_neg chip0516_342762 PBMC +12694 CAVSPISSGSARQLTF TRAV21*01 TRAJ22*01 HLA-B*08:01 B2M MHCI LPARTSPM PTPRN HomoSapiens PMID:34811538 tetramer-sort yes amplicon-seq Naive T cells healthy healthy_9 chip0516_175641 PBMC +12695 CIVRALEYGNKLVF TRAV26-1*01 TRAJ47*01 CASSMDSYNEQFF TRBV27*01 TRBJ2-1*01 HLA-A*01:01 B2M MHCI HSNLNDATY NP InfluenzaA PMID:34811538 tetramer-sort yes amplicon-seq Naive T cells healthy healthy_8 chip0516_104577 PBMC +12696 CAVKTDTNAGKSTF TRAV12-2*01 TRAJ27*01 HLA-B*08:01 B2M MHCI FLRGRAYGL EBNA3A EBV PMID:34811538 tetramer-sort yes amplicon-seq effector memory T cells healthy healthy_8 chip0516_711829 PBMC +12697 CAVKDTDKLIF TRAV8-1*01 TRAJ34*01 CASGSIVNTEAFF TRBV3-1*01 TRBJ1-1*01 HLA-A*02:01 B2M MHCI YVLDHLIVV BRLF1 EBV PMID:34811538 tetramer-sort yes amplicon-seq effector memory T cells healthy healthy_6 chip0516_513095 PBMC +12698 CAVV*Ktg??caGNMLTF TRAV2*01 TRAJ39*01 CSVEDPVQISGNTIYF TRBV29-1*01 TRBJ1-3*01 HLA-A*01:01 B2M MHCI VTDAAHLLI ZNT8 HomoSapiens PMID:34811538 tetramer-sort yes amplicon-seq Naive T cells tet_neg chip0516_240335 PBMC +12699 CVVIDYNQGGKLIF TRAV12-1*01 TRAJ23*01 CASRTSWTSYEQYF TRBV6-1*01 TRBJ2-7*01 HLA-A*01:01 B2M MHCI STNVGSNTY IAPP HomoSapiens PMID:34811538 tetramer-sort yes amplicon-seq Naive T cells healthy healthy_10 chip0516_227231 PBMC +12700 CAMTEGLW??aGPRGTLIF TRAV12-3*01 TRAJ42*01 HLA-A*02:01 B2M MHCI GILGFVFTL M1 InfluenzaA PMID:34811538 tetramer-sort yes amplicon-seq transitional T cells between effector and memory populations healthy healthy_6 chip0516_791652 PBMC +12701 CAVTLTLYSGAGSYQLTF TRAV21*01 TRAJ28*01 CASSLMETGGLSEKLFF TRBV28*01 TRBJ1-4*01 HLA-B*08:01 B2M MHCI QAKWRLQTL EBNA3A EBV PMID:34811538 tetramer-sort yes amplicon-seq transitional T cells between effector and memory populations healthy healthy_8 chip0516_39481 PBMC +12702 CILRDV*Gag??gcGGADGLTF TRAV26-2*01 TRAJ45*01 CASSVWSSYAQSL TRBV10-2*01 TRBJ2-7*01 HLA-B*08:01 B2M MHCI ALKCKGFHV NP InfluenzaA PMID:34811538 tetramer-sort yes amplicon-seq transitional T cells between effector and memory populations healthy healthy_8 chip0516_425193 PBMC +12703 CAVTLTLYSGAGSYQLTF TRAV21*01 TRAJ28*01 CASSLMGTGGLSEKLFF TRBV28*01 TRBJ1-4*01 HLA-B*08:01 B2M MHCI QAKWRLQTL EBNA3A EBV PMID:34811538 tetramer-sort yes amplicon-seq central memory T cells healthy healthy_8 chip0516_109991 PBMC +12704 CASSYRGANQPQHF TRBV12-3*01,TRBV12-4*01 TRBJ1-5*01 HLA-B*08:01 B2M MHCI LRLRLDQL GFAP HomoSapiens PMID:34811538 tetramer-sort yes amplicon-seq Naive T cells healthy healthy_8 chip0516_875163 PBMC +12705 CILPHAGGTSYGKLTF TRAV26-2*01 TRAJ52*01 CASSLGQAYEQYF TRBV7-8*01 TRBJ2-7*01 HLA-B*08:01 B2M MHCI FLRGRAYGL EBNA3A EBV PMID:34811538 tetramer-sort yes amplicon-seq effector memory T cells healthy healthy_8 chip0516_787757 PBMC +12706 CILPLAGGTSYGKLTF TRAV26-2*01 TRAJ52*01 CASSSGQAYEQYF TRBV7-8*01 TRBJ2-7*01 HLA-B*08:01 B2M MHCI FLRGRAYGL EBNA3A EBV PMID:34811538 tetramer-sort yes amplicon-seq effector memory T cells healthy healthy_8 chip0516_203353 PBMC +12707 CAVKTDTNAGKSTF TRAV12-2*01 TRAJ27*01 HLA-B*08:01 B2M MHCI FLRGRAYGL EBNA3A EBV PMID:34811538 tetramer-sort yes amplicon-seq effector T cells healthy healthy_8 chip0516_78526 PBMC +12708 CILPLAGGTSYGKLTF TRAV26-2*01 TRAJ52*01 CASSSGQAYEQYF TRBV7-8*01 TRBJ2-7*01 HLA-B*08:01 B2M MHCI FLRGRAYGL EBNA3A EBV PMID:34811538 tetramer-sort yes amplicon-seq effector memory T cells healthy healthy_8 chip0516_350960 PBMC +12709 CILPLAGGTSYGKLTF TRAV26-2*01 TRAJ52*01 CASSSGQAYEQYF TRBV7-8*01 TRBJ2-7*01 HLA-B*08:01 B2M MHCI FLRGRAYGL EBNA3A EBV PMID:34811538 tetramer-sort yes amplicon-seq effector T cells healthy healthy_8 chip0516_172959 PBMC +12710 CASSPEGPNSYEQYF TRBV18*01 TRBJ2-7*01 HLA-A*01:01 B2M MHCI STNVGSNTY IAPP HomoSapiens PMID:34811538 tetramer-sort yes amplicon-seq effector memory T cells healthy healthy_10 chip0516_87778 PBMC +12711 CAASAQPP*a?tNNAGNMLTF TRAV29/DV5*01 TRAJ39*01 HLA-B*08:01 B2M MHCI TLKKMREI GAD2 HomoSapiens PMID:34811538 tetramer-sort yes amplicon-seq Naive T cells healthy healthy_9 chip0516_305229 PBMC +12712 CAVEDQGIYNQGGKLIF TRAV2*01 TRAJ23*01 CASSMYFGFSPPGGELFF TRBV19*01 TRBJ2-2*01 HLA-A*02:01 B2M MHCI NLFLFLFAV IGRP HomoSapiens PMID:34811538 tetramer-sort yes amplicon-seq Naive T cells healthy healthy_6 chip0516_452553 PBMC +12714 CAVEGHYGGSQGNLIF TRAV2*01 TRAJ42*01 CASSPSMSETQYF TRBV5-4*01 TRBJ2-5*01 HLA-A*01:01 B2M MHCI CTELKLSDY NP InfluenzaA PMID:34811538 tetramer-sort yes amplicon-seq transitional T cells between effector and memory populations healthy healthy_10 chip0516_221605 PBMC +12715 CAMNYGGFKTIF TRAV14/DV4*01 TRAJ9*01 CASSEWGTSGVNEQFF TRBV25-1*01 TRBJ2-1*01 HLA-B*08:01 B2M MHCI FLRGRAYGL EBNA3A EBV PMID:34811538 tetramer-sort yes amplicon-seq Naive T cells healthy healthy_8 chip0516_647421 PBMC +12717 CAVQGGKLIF TRAV12-2*01 TRAJ23*01 HLA-A*02:01 B2M MHCI LLAGIGTVPI PGT HomoSapiens PMID:34811538 tetramer-sort yes amplicon-seq central memory T cells healthy healthy_7 chip0516_337420 PBMC +12718 CASSPLGGADGYTF TRBV6-1*01 TRBJ1-2*01 HLA-A*02:01 B2M MHCI FLYALALLL LMP2 EBV PMID:34811538 tetramer-sort yes amplicon-seq effector memory T cells healthy healthy_6 chip0516_820759 PBMC +12719 CILPLAGGTSYGKLTF TRAV26-2*01 TRAJ52*01 HLA-B*08:01 B2M MHCI FLRGRAYGL EBNA3A EBV PMID:34811538 tetramer-sort yes amplicon-seq effector memory T cells healthy healthy_8 chip0516_690864 PBMC +12720 CAVTLTLYSGAGSYQLTF TRAV21*01 TRAJ28*01 CASSLMGTGGLSEKLFF TRBV28*01 TRBJ1-4*01 HLA-B*08:01 B2M MHCI QAKWRLQTL EBNA3A EBV PMID:34811538 tetramer-sort yes amplicon-seq effector memory T cells healthy healthy_8 chip0516_411607 PBMC +12721 CILPLAGGTSYGKLTF TRAV26-2*01 TRAJ52*01 CASSLGQAYEQYF TRBV7-8*01 TRBJ2-7*01 HLA-B*08:01 B2M MHCI FLRGRAYGL EBNA3A EBV PMID:34811538 tetramer-sort yes amplicon-seq effector memory T cells healthy healthy_8 chip0516_34703 PBMC +12722 CILPLAGGTSYGKLTF TRAV26-2*01 TRAJ52*01 CASSLGQAYEQYF TRBV7-8*01 TRBJ2-7*01 HLA-B*08:01 B2M MHCI FLRGRAYGL EBNA3A EBV PMID:34811538 tetramer-sort yes amplicon-seq effector memory T cells healthy healthy_8 chip0516_675390 PBMC +12723 CASSSGQAYEQYF TRBV7-8*01 TRBJ2-7*01 HLA-B*08:01 B2M MHCI FLRGRAYGL EBNA3A EBV PMID:34811538 tetramer-sort yes amplicon-seq effector memory T cells healthy healthy_8 chip0516_251525 PBMC +12724 CASSLGQAYEQYF TRBV7-8*01 TRBJ2-7*01 HLA-B*08:01 B2M MHCI FLRGRAYGL EBNA3A EBV PMID:34811538 tetramer-sort yes amplicon-seq effector memory T cells healthy healthy_8 chip0516_15491 PBMC +12725 CAAKNTNAGNSTL TRAV13-1*01 TRAJ27*01 CASSYTAKTDTSNQPQHF TRBV6-2*01,TRBV6-3*01 TRBJ1-5*01 HLA-A*02:01 B2M MHCI GILGFVFTL M1 InfluenzaA PMID:34811538 tetramer-sort yes amplicon-seq transitional T cells between effector and memory populations healthy healthy_6 chip0516_335936 PBMC +12726 CASSLMGTGGLSEKLFF TRBV28*01 TRBJ1-4*01 HLA-B*08:01 B2M MHCI QAKWRLQTL EBNA3A EBV PMID:34811538 tetramer-sort yes amplicon-seq effector memory T cells healthy healthy_8 chip0516_528732 PBMC +12727 CILPLAGGTSYGKLTF TRAV26-2*01 TRAJ52*01 CASSLGQAYEQYF TRBV7-8*01 TRBJ2-7*01 HLA-B*08:01 B2M MHCI FLRGRAYGL EBNA3A EBV PMID:34811538 tetramer-sort yes amplicon-seq effector T cells healthy healthy_8 chip0516_17480 PBMC +12730 CAGLIMKTSYDKVTF TRAV25*01 TRAJ50*01 CASSWDGDNQPQHF TRBV6-5*01 TRBJ1-5*01 HLA-B*08:01 B2M MHCI RAKFKQLL BZLF1 EBV PMID:34811538 tetramer-sort yes amplicon-seq Naive T cells healthy healthy_8 chip0516_177521 PBMC +12731 CALSEEIYNQGGKLIF TRAV19*01 TRAJ23*01 CASSLAGTGYNEQFF TRBV7-2*01 TRBJ2-1*01 HLA-B*08:01 B2M MHCI QAKWRLQTL EBNA3A EBV PMID:34811538 tetramer-sort yes amplicon-seq effector T cells healthy healthy_8 chip0516_637147 PBMC +12732 CAMRDSTGGSNYKLTF TRAV14/DV4*01 TRAJ53*01 CASSSVPDMNTEAFF TRBV19*01 TRBJ1-1*01 HLA-B*08:01 B2M MHCI RPIIRPATL NP InfluenzaA PMID:34811538 tetramer-sort yes amplicon-seq transitional T cells between effector and memory populations healthy healthy_8 chip0516_852015 PBMC +12733 CAATFYGGSQGNLIF TRAV29/DV5*01 TRAJ42*01 CASSTQTAPDDTQYF TRBV7-9*01 TRBJ2-3*01 HLA-B*08:01 B2M MHCI RAKFKQLL BZLF1 EBV PMID:34811538 tetramer-sort yes amplicon-seq effector memory T cells healthy healthy_8 chip0516_788629 PBMC +12735 CASSSRLDDTGELFF TRBV7-7*01 TRBJ2-2*01 HLA-A*01:01 B2M MHCI CTELKLSDY NP InfluenzaA PMID:34811538 tetramer-sort yes amplicon-seq transitional T cells between effector and memory populations healthy healthy_10 chip0516_151472 PBMC +12736 CLVFNTGGFKTIF TRAV4*01 TRAJ9*01 CSVDTGEGGGYTF TRBV29-1*01 TRBJ1-2*01 HLA-B*08:01 B2M MHCI ELRSRYWAI NP InfluenzaA PMID:34811538 tetramer-sort yes amplicon-seq transitional T cells between effector and memory populations healthy healthy_10 chip0516_360616 PBMC +12737 CILPLAGGTSYGKLTF TRAV26-2*01 TRAJ52*01 CASSSGQAYEQYL TRBV7-8*01 TRBJ2-7*01 HLA-B*08:01 B2M MHCI FLRGRAYGL EBNA3A EBV PMID:34811538 tetramer-sort yes amplicon-seq effector memory T cells healthy healthy_8 chip0516_90100 PBMC +12738 CVVTLSNFGNEKLTL TRAV12-1*01 TRAJ48*01 HLA-A*02:01 B2M MHCI LLAGIGTVPI PGT HomoSapiens PMID:34811538 tetramer-sort yes amplicon-seq Naive T cells healthy healthy_7 chip0516_733715 PBMC +12739 CILPLAGGTSYGKLTF TRAV26-2*01 TRAJ52*01 CASSLGQAYEQYF TRBV7-8*01 TRBJ2-7*01 HLA-B*08:01 B2M MHCI FLRGRAYGL EBNA3A EBV PMID:34811538 tetramer-sort yes amplicon-seq effector memory T cells healthy healthy_8 chip0516_447229 PBMC +12740 CASSLGQAYEQYF TRBV7-8*01 TRBJ2-7*01 HLA-B*08:01 B2M MHCI FLRGRAYGL EBNA3A EBV PMID:34811538 tetramer-sort yes amplicon-seq central memory T cells healthy healthy_10 chip0516_339127 PBMC +12741 CVVHYNTDKLIF TRAV12-1*01 TRAJ34*01 CASSEAWGNGIYF TRBV2*01 TRBJ1-3*01 HLA-A*01:01 B2M MHCI CTELKLSDY NP InfluenzaA PMID:34811538 tetramer-sort yes amplicon-seq transitional T cells between effector and memory populations healthy healthy_8 chip0516_857612 PBMC +12742 CAMLISNFGNEKLTF TRAV12-3*01 TRAJ48*01 CASSPLNGGTAARDTIYF TRBV3-1*01 TRBJ1-3*01 HLA-A*02:01 B2M MHCI LLAGIGTVPI PGT HomoSapiens PMID:34811538 tetramer-sort yes amplicon-seq Naive T cells healthy healthy_7 chip0516_598727 PBMC +12744 CAVLMDSNYQLIW TRAV21*01,TRAV12-3*01 TRAJ33*01 HLA-A*02:01 B2M MHCI CLGGLLTMV LMP2A EBV PMID:34811538 tetramer-sort yes amplicon-seq effector memory T cells healthy healthy_6 chip0516_866978 PBMC +12745 CALSARGNNRLAF TRAV16*01 TRAJ7*01 HLA-A*02:01 B2M MHCI SLAAGVKLL PTPRN HomoSapiens PMID:34811538 tetramer-sort yes amplicon-seq Naive T cells healthy healthy_6 chip0516_610659 PBMC +12746 CAASTPYGNNRLAF TRAV13-1*01 TRAJ7*01 CASSHTSEPFDNEQFF TRBV6-2*01,TRBV6-3*01 TRBJ2-1*01 HLA-B*08:01 B2M MHCI QAKWRLQTL EBNA3A EBV PMID:34811538 tetramer-sort yes amplicon-seq Naive T cells healthy healthy_9 chip0516_362166 PBMC +12747 CAATGSDGPTLLF TRAV12-2*01 TRAJ16*01 HLA-A*02:01 B2M MHCI LLAGIGTVPI PGT HomoSapiens PMID:34811538 tetramer-sort yes amplicon-seq Naive T cells healthy healthy_7 chip0516_651336 PBMC +12748 CASSGQGYNEQFF TRBV6-1*01 TRBJ2-1*01 HLA-A*02:01 B2M MHCI LLFNILGGWV NS4B HCV PMID:34811538 tetramer-sort yes amplicon-seq Naive T cells healthy healthy_7 chip0516_301541 PBMC +12749 CSVDSSNEQFF TRBV29-1*01 TRBJ2-1*01 HLA-A*01:01 B2M MHCI ALASCMGLIY M1 InfluenzaA PMID:34811538 tetramer-sort yes amplicon-seq Naive T cells healthy healthy_10 chip0516_767116 PBMC +12750 CVVNSYNNDMRF TRAV12-1*01 TRAJ43*01 CASSQALSYEQYF TRBV4-1*01 TRBJ2-7*01 HLA-A*01:01 B2M MHCI VSATAGTTVY GAD2 HomoSapiens PMID:34811538 tetramer-sort yes amplicon-seq Naive T cells healthy healthy_10 chip0516_503864 PBMC +12751 CAMRDSTGGSNYKLTF TRAV14/DV4*01 TRAJ53*01 CASSSVPDMNTEAFF TRBV19*01 TRBJ1-1*01 HLA-B*08:01 B2M MHCI RPIIRPATL NP InfluenzaA PMID:34811538 tetramer-sort yes amplicon-seq transitional T cells between effector and memory populations healthy healthy_8 chip0516_595681 PBMC +12752 CASRLGQAYEQYF TRBV7-8*01 TRBJ2-7*01 HLA-B*08:01 B2M MHCI FLRGRAYGL EBNA3A EBV PMID:34811538 tetramer-sort yes amplicon-seq effector memory T cells healthy healthy_10 chip0516_654573 PBMC +12753 CILPLAGGTSYGKLTF TRAV26-2*01 TRAJ52*01 CASSLGQAYEQYF TRBV7-8*01 TRBJ2-7*01 HLA-B*08:01 B2M MHCI FLRGRAYGL EBNA3A EBV PMID:34811538 tetramer-sort yes amplicon-seq effector memory T cells healthy healthy_8 chip0516_9729 PBMC +12754 CAVPSGgg?GLDKIIF TRAV1-2*01 TRAJ30*01 HLA-A*01:01 B2M MHCI PTEKGANEY ZNT8 HomoSapiens PMID:34811538 tetramer-sort yes amplicon-seq transitional T cells between effector and memory populations healthy healthy_8 chip0516_460472 PBMC +12755 CASSPRDVNGEQFF TRBV27*01 TRBJ2-1*01 HLA-A*02:01 B2M MHCI ALAGIGILTV MART1 HomoSapiens PMID:34811538 tetramer-sort yes amplicon-seq Naive T cells healthy healthy_7 chip0516_537379 PBMC +12756 CAASEANFVF TRAV13-1*01 TRAJ26*01 HLA-B*08:01 B2M MHCI RAKFKQLL BZLF1 EBV PMID:34811538 tetramer-sort yes amplicon-seq transitional T cells between effector and memory populations healthy healthy_8 chip0516_412140 PBMC +12758 CAASPTGGAQKLVF TRAV29/DV5*01 TRAJ54*01 CASSLTLLNEQFF TRBV7-3*01 TRBJ2-1*01 HLA-B*08:01 B2M MHCI RAKFKQLL BZLF1 EBV PMID:34811538 tetramer-sort yes amplicon-seq Naive T cells healthy healthy_9 chip0516_844063 PBMC +12762 CAMSGSNFGNEKLTF TRAV12-3*01 TRAJ48*01 HLA-A*02:01 B2M MHCI LLAGIGTVPI PGT HomoSapiens PMID:34811538 tetramer-sort yes amplicon-seq Naive T cells healthy healthy_7 chip0516_819503 PBMC +12763 CASSLMGTGGLSEKLFF TRBV28*01 TRBJ1-4*01 HLA-B*08:01 B2M MHCI QAKWRLQTL EBNA3A EBV PMID:34811538 tetramer-sort yes amplicon-seq central memory T cells healthy healthy_8 chip0516_588549 PBMC +12764 CAGRGDPYSGAGSYQLTF TRAV25*01 TRAJ28*01 HLA-B*08:01 B2M MHCI QAKWRLQTL EBNA3A EBV PMID:34811538 tetramer-sort yes amplicon-seq Naive T cells healthy healthy_9 chip0516_765219 PBMC +12765 CAASGGGSQGNLIF TRAV29/DV5*01 TRAJ42*01 CASSLSDGQKYQRGTGELFF TRBV28*01 TRBJ2-2*01 HLA-A*02:01 B2M MHCI AIIRILQQL VPR HIV-1 PMID:34811538 tetramer-sort yes amplicon-seq effector T cells healthy healthy_6 chip0516_342180 PBMC +12766 CAVQAYDRGGGNSVLTF TRAV20*01 TRAJ53*01 CASSQLPGGSYEQYF TRBV4-2*01 TRBJ2-7*01 HLA-A*02:01 B2M MHCI RLLPLLALL PREINS HomoSapiens PMID:34811538 tetramer-sort yes amplicon-seq Naive T cells healthy healthy_7 chip0516_816578 PBMC +12767 CAMIGSTLGRLYF TRAV14/DV4*01 TRAJ18*01 CASSLVDRETETQYF TRBV7-7*01 TRBJ2-5*01 HLA-B*08:01 B2M MHCI MALWMRLL INS HomoSapiens PMID:34811538 tetramer-sort yes amplicon-seq effector memory T cells healthy healthy_8 chip0516_217691 PBMC +12770 CAADLLAGGHNKLIF TRAV25*01 TRAJ4*01 CASNSPNEQFF TRBV27*01 TRBJ2-1*01 HLA-B*08:01 B2M MHCI YLKTNLFL G6PC2 HomoSapiens PMID:34811538 tetramer-sort yes amplicon-seq Naive T cells tet_neg chip0516_19268 PBMC +12771 CASSGDGMSTEAFF TRBV10-2*01 TRBJ1-1*01 HLA-A*02:01 B2M MHCI CLGGLLTMV LMP2A EBV PMID:34811538 tetramer-sort yes amplicon-seq effector T cells healthy healthy_6 chip0516_829598 PBMC +12772 CSVGAGGTNEKLFF TRBV29-1*01 TRBJ1-4*01 HLA-A*02:01 B2M MHCI GLCTLVAML BLMF1 EBV PMID:34811538 tetramer-sort yes amplicon-seq transitional T cells between effector and memory populations healthy healthy_6 chip0516_862247 PBMC +12774 CASSSEETGSNQPQHF TRBV7-9*01 TRBJ1-5*01 HLA-B*08:01 B2M MHCI QAKWRLQTL EBNA3A EBV PMID:34811538 tetramer-sort yes amplicon-seq transitional T cells between effector and memory populations healthy healthy_10 chip0516_42662 PBMC +12775 CAMSFVS??cTGNQFYF TRAV14/DV4*01 TRAJ49*01 CASSSNEETGRDYGYTF TRBV28*01 TRBJ1-2*01 HLA-A*02:01 B2M MHCI LLAGIGTVPI PGT HomoSapiens PMID:34811538 tetramer-sort yes amplicon-seq Naive T cells healthy healthy_7 chip0516_345393 PBMC +12776 CILPLAGGTSYGKLTF TRAV26-2*01 TRAJ52*01 CASSLGQAYEQYF TRBV7-8*01 TRBJ2-7*01 HLA-B*08:01 B2M MHCI FLRGRAYGL EBNA3A EBV PMID:34811538 tetramer-sort yes amplicon-seq effector memory T cells healthy healthy_8 chip0516_858709 PBMC +12778 CASSGDGMNTEAFF TRBV10-2*01 TRBJ1-1*01 HLA-A*02:01 B2M MHCI CLGGLLTMV LMP2A EBV PMID:34811538 tetramer-sort yes amplicon-seq effector memory T cells healthy healthy_6 chip0516_54365 PBMC +12779 CAVEDLGTGGFLTIF TRAV2*01 TRAJ9*01 LCQ*YAga??gcAYEPHF TRBV19*01 TRBJ2-7*01 HLA-A*02:01 B2M MHCI GILGFVFTL M1 InfluenzaA PMID:34811538 tetramer-sort yes amplicon-seq transitional T cells between effector and memory populations healthy healthy_7 chip0516_512942 PBMC +12780 CSVGDGQKLLF TRAV12-2*01 TRAJ16*01 CASSVGTGNGYTF TRBV25-1*01 TRBJ1-2*01 HLA-A*02:01 B2M MHCI ALAGIGILTV MART1 HomoSapiens PMID:34811538 tetramer-sort yes amplicon-seq Naive T cells healthy healthy_7 chip0516_556706 PBMC +12781 CAMRGVTEGSNYKLTF TRAV14/DV4*01 TRAJ53*01 CASSIYAATYEQYF TRBV19*01 TRBJ2-7*01 HLA-A*02:01 B2M MHCI SLYNTVATLY GAG HIV-1 PMID:34811538 tetramer-sort yes amplicon-seq Naive T cells healthy healthy_7 chip0516_487037 PBMC +12782 CASSYQGGNYGYTF TRBV6-5*01 TRBJ1-2*01 HLA-A*02:01 B2M MHCI FLYALALLL LMP2 EBV PMID:34811538 tetramer-sort yes amplicon-seq central memory T cells healthy healthy_7 chip0516_160705 PBMC +12783 CAVLMDSNYQLIW TRAV21*01 TRAJ33*01 HLA-A*02:01 B2M MHCI CLGGLLTMV LMP2A EBV PMID:34811538 tetramer-sort yes amplicon-seq effector memory T cells healthy healthy_6 chip0516_561634 PBMC +12784 CAMSASNFGNEKLTF TRAV12-3*01 TRAJ48*01 CASSQAcc??ccHNERFF TRBV4-3*01 TRBJ2-1*01 HLA-A*02:01 B2M MHCI LLAGIGTVPI PGT HomoSapiens PMID:34811538 tetramer-sort yes amplicon-seq Naive T cells healthy healthy_7 chip0516_255323 PBMC +12785 CAVITGNQFYF TRAV12-2*01 TRAJ49*01 GASSEEGt?cTPIEAFF TRBV25-1*01 TRBJ1-1*01 HLA-B*08:01 B2M MHCI RAKFKQLL BZLF1 EBV PMID:34811538 tetramer-sort yes amplicon-seq Naive T cells healthy healthy_8 chip0516_452189 PBMC +12786 CILPLAGGTSYGKLTF TRAV26-2*01 TRAJ52*01 CASSLGQAYEQYF TRBV7-8*01 TRBJ2-7*01 HLA-B*08:01 B2M MHCI FLRGRAYGL EBNA3A EBV PMID:34811538 tetramer-sort yes amplicon-seq effector memory T cells healthy healthy_8 chip0516_219008 PBMC +12787 CAPPTNFGNEKLTF TRAV9-2*01 TRAJ48*01 HLA-B*08:01 B2M MHCI CPLSKILL LMP2A EBV PMID:34811538 tetramer-sort yes amplicon-seq Naive T cells healthy healthy_9 chip0516_686309 PBMC +12789 CILPLAGGTSYGKLTF TRAV26-2*01 TRAJ52*01 CASSSGQAYEQYF TRBV7-8*01 TRBJ2-7*01 HLA-B*08:01 B2M MHCI FLRGRAYGL EBNA3A EBV PMID:34811538 tetramer-sort yes amplicon-seq effector memory T cells healthy healthy_8 chip0516_834958 PBMC +12791 CASSLGQAYEQYF TRBV7-8*01 TRBJ2-7*01 HLA-B*08:01 B2M MHCI FLRGRAYGL EBNA3A EBV PMID:34811538 tetramer-sort yes amplicon-seq effector memory T cells healthy healthy_8 chip0516_494187 PBMC +12792 CGAEGWWag??gtSNSKLPL TRAV34*01 TRAJ53*01 HLA-A*02:01 B2M MHCI YLLEMLWRL LMP1 EBV PMID:34811538 tetramer-sort yes amplicon-seq central memory T cells healthy healthy_6 chip0516_148011 PBMC +12793 CASTGTASKLTF TRAV12-2*01 TRAJ44*01 CSATPGQAWELFF TRBV20-1*01 TRBJ2-2*01 HLA-A*02:01 B2M MHCI ALAGIGILTV MART1 HomoSapiens PMID:34811538 tetramer-sort yes amplicon-seq Naive T cells healthy healthy_7 chip0516_174484 PBMC +12795 CAASTGNQFYF TRAV29/DV5*01 TRAJ49*01 CASSFEGAVNTIYF TRBV12-3*01,TRBV12-4*01 TRBJ1-3*01 HLA-A*01:01 B2M MHCI STNVGSNTY IAPP HomoSapiens PMID:34811538 tetramer-sort yes amplicon-seq Naive T cells healthy healthy_8 chip0516_836764 PBMC +12796 CILPLAGGTSYGKLTF TRAV26-2*01 TRAJ52*01 CASSLGQAYEQYF TRBV7-8*01 TRBJ2-7*01 HLA-B*08:01 B2M MHCI FLRGRAYGL EBNA3A EBV PMID:34811538 tetramer-sort yes amplicon-seq effector memory T cells healthy healthy_8 chip0516_486417 PBMC +12797 CAAALSNFGNEKLTF TRAV12-3*01 TRAJ48*01 CASSLSSGDNTGELFF TRBV27*01 TRBJ2-2*01 HLA-A*02:01 B2M MHCI LLAGIGTVPI PGT HomoSapiens PMID:34811538 tetramer-sort yes amplicon-seq Naive T cells healthy healthy_6 chip0516_60860 PBMC +12799 CAGRESNTGKLIF TRAV35*01 TRAJ37*01 CASSLVRGGEETQYF TRBV27*01 TRBJ2-5*01 HLA-B*08:01 B2M MHCI QAKWRLQTL EBNA3A EBV PMID:34811538 tetramer-sort yes amplicon-seq Naive T cells healthy healthy_8 chip0516_195816 PBMC +12800 CASSSGQGDNEQFF TRBV11-2*01 TRBJ2-1*01 HLA-A*02:01 B2M MHCI GLCTLVAML BLMF1 EBV PMID:34811538 tetramer-sort yes amplicon-seq effector memory T cells healthy healthy_6 chip0516_881086 PBMC +12801 CASSGDGMNTEAFF TRBV10-2*01 TRBJ1-1*01 HLA-A*02:01 B2M MHCI CLGGLLTMV LMP2A EBV PMID:34811538 tetramer-sort yes amplicon-seq effector memory T cells healthy healthy_6 chip0516_790477 PBMC +12802 CILPLAGGTSYGKLTF TRAV26-2*01 TRAJ52*01 CASSLGQAYEQYF TRBV7-8*01 TRBJ2-7*01 HLA-B*08:01 B2M MHCI FLRGRAYGL EBNA3A EBV PMID:34811538 tetramer-sort yes amplicon-seq effector memory T cells healthy healthy_8 chip0516_563611 PBMC +12804 CAMRtg??ccTLMF TRAV14/DV4*01 TRAJ31*01 HLA-B*08:01 B2M MHCI FLRGRAYGL EBNA3A EBV PMID:34811538 tetramer-sort yes amplicon-seq effector memory T cells healthy healthy_8 chip0516_466880 PBMC +12805 CASMDRTDQPQHF TRBV19*01 TRBJ1-5*01 HLA-A*02:01 B2M MHCI VMNILLQYV GAD65 HomoSapiens PMID:34811538 tetramer-sort yes amplicon-seq Naive T cells healthy healthy_7 chip0516_761316 PBMC +12806 CAASDG??aHVPLTF TRAV29/DV5*01 TRAJ48*01 HLA-B*08:01 B2M MHCI RAKFKQLL BZLF1 EBV PMID:34811538 tetramer-sort yes amplicon-seq effector T cells healthy healthy_9 chip0516_653599 PBMC +12807 CILPLAGGTSYGKLTF TRAV26-2*01 TRAJ52*01 CASSLGQAYEQYF TRBV7-8*01 TRBJ2-7*01 HLA-B*08:01 B2M MHCI FLRGRAYGL EBNA3A EBV PMID:34811538 tetramer-sort yes amplicon-seq central memory T cells healthy healthy_8 chip0516_424881 PBMC +12808 CALQTGANNLFF TRAV16*01 TRAJ36*01 CSASQGFGGSNQP*HF TRBV20-1*01 TRBJ1-5*01 HLA-B*08:01 B2M MHCI LNHLKATPI IAPP HomoSapiens PMID:34811538 tetramer-sort yes amplicon-seq Naive T cells healthy healthy_8 chip0516_803639 PBMC +12811 CAMSGDGKLTF TRAV12-3*01 TRAJ52*01 CASSAPLSGNNEQFF TRBV6-2*01,TRBV6-3*01 TRBJ2-1*01 HLA-A*02:01 B2M MHCI LLAGIGTVPI PGT HomoSapiens PMID:34811538 tetramer-sort yes amplicon-seq Naive T cells healthy healthy_7 chip0516_139793 PBMC +12812 CAMSVSNFGNEKLTF TRAV12-3*01 TRAJ48*01 CASSQDRSTSGDIEQFF TRBV3-1*01 TRBJ2-1*01 HLA-A*02:01 B2M MHCI LLAGIGTVPI PGT HomoSapiens PMID:34811538 tetramer-sort yes amplicon-seq Naive T cells healthy healthy_6 chip0516_56140 PBMC +12813 CVAMAGTALIF TRAV12-1*01 TRAJ15*01 CASSSDPNNEQFF TRBV3-1*01 TRBJ2-1*01 HLA-B*08:01 B2M MHCI YAYAKWKL ZNT8 HomoSapiens PMID:34811538 tetramer-sort yes amplicon-seq Naive T cells healthy healthy_8 chip0516_189245 PBMC +12814 CAVKTDTNAGKSTF TRAV12-2*01 TRAJ27*01 HLA-B*08:01 B2M MHCI FLRGRAYGL EBNA3A EBV PMID:34811538 tetramer-sort yes amplicon-seq effector memory T cells healthy healthy_8 chip0516_242057 PBMC +12815 CALSEEIYNQGGKLIF TRAV19*01 TRAJ23*01 HLA-B*08:01 B2M MHCI QAKWRLQTL EBNA3A EBV PMID:34811538 tetramer-sort yes amplicon-seq effector memory T cells healthy healthy_8 chip0516_98708 PBMC +12816 CASSSGQAYEQYF TRBV7-8*01 TRBJ2-7*01 HLA-B*08:01 B2M MHCI FLRGRAYGL EBNA3A EBV PMID:34811538 tetramer-sort yes amplicon-seq effector T cells healthy healthy_8 chip0516_476216 PBMC +12817 CASSAADRSSYNEQFF TRBV5-4*01 TRBJ2-1*01 HLA-B*08:01 B2M MHCI QAKWRLQTL EBNA3A EBV PMID:34811538 tetramer-sort yes amplicon-seq Naive T cells healthy healthy_9 chip0516_467020 PBMC +12818 CILPLAGGTSHGKLTF TRAV26-2*01 TRAJ52*01 CASSLGQAYEQYF TRBV7-8*01 TRBJ2-7*01 HLA-B*08:01 B2M MHCI FLRGRAYGL EBNA3A EBV PMID:34811538 tetramer-sort yes amplicon-seq effector memory T cells healthy healthy_8 chip0516_860343 PBMC +12819 SVVTL**ag??gtSRCILSF TRAV12-1*01 TRAJ53*01 CASSPGTGVPEQYF TRBV28*01 TRBJ2-7*01 HLA-A*02:01 B2M MHCI LLAGIGTVPI PGT HomoSapiens PMID:34811538 tetramer-sort yes amplicon-seq Naive T cells healthy healthy_6 chip0516_150811 PBMC +12820 CAVDRFNKFYF TRAV12-1*01 TRAJ21*01 HLA-A*01:01 B2M MHCI CTELKLSDY NP InfluenzaA PMID:34811538 tetramer-sort yes amplicon-seq effector T cells healthy healthy_8 chip0516_653352 PBMC +12821 CASSGDGMNTEAFF TRBV10-2*01 TRBJ1-1*01 HLA-A*02:01 B2M MHCI CLGGLLTMV LMP2A EBV PMID:34811538 tetramer-sort yes amplicon-seq effector memory T cells healthy healthy_6 chip0516_436261 PBMC +12823 CGDFGLgt?SAGLLTF TRAV6*01 TRAJ22*01 CASSPGAGQDYEQYF TRBV27*01 TRBJ2-7*01 HLA-A*02:01 B2M MHCI CINGVCWTV NS3 HCV PMID:34811538 tetramer-sort yes amplicon-seq Naive T cells healthy healthy_6 chip0516_447163 PBMC +12824 CASSFGVGEGTEAFF TRBV7-3*01 TRBJ1-1*01 HLA-B*08:01 B2M MHCI RAKFKQLL BZLF1 EBV PMID:34811538 tetramer-sort yes amplicon-seq effector memory T cells healthy healthy_8 chip0516_678248 PBMC +12826 CASSLMGTGGLSEKLFF TRBV28*01 TRBJ1-4*01 HLA-B*08:01 B2M MHCI QAKWRLQTL EBNA3A EBV PMID:34811538 tetramer-sort yes amplicon-seq central memory T cells healthy healthy_8 chip0516_859366 PBMC +12828 CASSLDSGTSRYEQYF TRBV5-4*01 TRBJ2-7*01 HLA-A*01:01 B2M MHCI CTELKLSDY NP InfluenzaA PMID:34811538 tetramer-sort yes amplicon-seq transitional T cells between effector and memory populations healthy healthy_10 chip0516_799099 PBMC +12830 CAMGR??tNQFYF TRAV12-3*01 TRAJ49*01 HLA-A*02:01 B2M MHCI GILGFVFTL M1 InfluenzaA PMID:34811538 tetramer-sort yes amplicon-seq transitional T cells between effector and memory populations healthy healthy_7 chip0516_764792 PBMC +12831 CASSIYGGSGNTIYF TRBV19*01 TRBJ1-3*01 HLA-A*02:01 B2M MHCI LAVDGVLSV ZNT8 HomoSapiens PMID:34811538 tetramer-sort yes amplicon-seq Naive T cells healthy healthy_7 chip0516_86003 PBMC +12832 CAVTLTLYSGAGRYQLTF TRAV21*01 TRAJ28*01 CASSLMGTGGLSEKLFF TRBV28*01 TRBJ1-4*01 HLA-B*08:01 B2M MHCI QAKWRLQTL EBNA3A EBV PMID:34811538 tetramer-sort yes amplicon-seq central memory T cells healthy healthy_8 chip0516_477772 PBMC +12833 CAMSRSNFGNEKLTF TRAV12-3*01 TRAJ48*01 CASSFSDVSGAPLRADTQYF TRBV7-8*01 TRBJ2-3*01 HLA-A*02:01 B2M MHCI LLAGIGTVPI PGT HomoSapiens PMID:34811538 tetramer-sort yes amplicon-seq Naive T cells healthy healthy_6 chip0516_44249 PBMC +12834 CAEDHALNF TRAV23/DV6*01 TRAJ41*01 CASSSGQGDNEQFF TRBV11-2*01,TRBV11-3*01 TRBJ2-1*01 HLA-A*02:01 B2M MHCI GLCTLVAML BLMF1 EBV PMID:34811538 tetramer-sort yes amplicon-seq effector memory T cells healthy healthy_6 chip0516_517928 PBMC +12835 CASSSGQGDNEQFF TRBV11-3*01 TRBJ2-1*01 HLA-A*02:01 B2M MHCI GLCTLVAML BLMF1 EBV PMID:34811538 tetramer-sort yes amplicon-seq effector memory T cells healthy healthy_6 chip0516_277690 PBMC +12836 CAESIGKIIF TRAV5*01 TRAJ30*01 CSVGTGGTTEKLFF TRBV29-1*01 TRBJ1-4*01 HLA-A*02:01 B2M MHCI GLCTLVAML BLMF1 EBV PMID:34811538 tetramer-sort yes amplicon-seq effector T cells healthy healthy_7 chip0516_691970 PBMC +12837 CAMRDSTGGSNYKLTF TRAV14/DV4*01 TRAJ53*01 CASSSVPDMNTEAFF TRBV19*01 TRBJ1-1*01 HLA-B*08:01 B2M MHCI RPIIRPATL NP InfluenzaA PMID:34811538 tetramer-sort yes amplicon-seq transitional T cells between effector and memory populations healthy healthy_8 chip0516_580749 PBMC +12838 CILPLAGGTSYGKLTF TRAV26-2*01 TRAJ52*01 CASSLGQAYEQYF TRBV7-8*01 TRBJ2-7*01 HLA-B*08:01 B2M MHCI FLRGRAYGL EBNA3A EBV PMID:34811538 tetramer-sort yes amplicon-seq effector T cells healthy healthy_8 chip0516_78282 PBMC +12839 CASSQDGVPGGNEQYF TRBV4-1*01 TRBJ2-7*01 HLA-A*01:01 B2M MHCI CTELKLSDY NP InfluenzaA PMID:34811538 tetramer-sort yes amplicon-seq transitional T cells between effector and memory populations healthy healthy_8 chip0516_796653 PBMC +12840 CAVDLSGGYQKVTF TRAV12-2*01 TRAJ13*01 CASSYSLDGGQPQHF TRBV6-5*01 TRBJ1-5*01 HLA-A*02:01 B2M MHCI ALGIGILTV MART1 HomoSapiens PMID:34811538 tetramer-sort yes amplicon-seq Naive T cells healthy healthy_7 chip0516_108103 PBMC +12841 CILPLAGGTSYGKLTF TRAV26-2*01 TRAJ52*01 HLA-B*08:01 B2M MHCI FLRGRAYGL EBNA3A EBV PMID:34811538 tetramer-sort yes amplicon-seq effector memory T cells healthy healthy_8 chip0516_48431 PBMC +12842 CILPLAGGTSYGKLTF TRAV26-2*01 TRAJ52*01 CASSLGQAYEQYF TRBV7-8*01 TRBJ2-7*01 HLA-B*08:01 B2M MHCI FLRGRAYGL EBNA3A EBV PMID:34811538 tetramer-sort yes amplicon-seq transitional T cells between effector and memory populations healthy healthy_10 chip0516_729134 PBMC +12843 CASSLGQAYEQYF TRBV7-8*01 TRBJ2-7*01 HLA-B*08:01 B2M MHCI FLRGRAYGL EBNA3A EBV PMID:34811538 tetramer-sort yes amplicon-seq effector memory T cells healthy healthy_8 chip0516_728691 PBMC +12844 CILPLAGGTSYGKLTF TRAV26-2*01 TRAJ52*01 HLA-B*08:01 B2M MHCI FLRGRAYGL EBNA3A EBV PMID:34811538 tetramer-sort yes amplicon-seq effector memory T cells tet_neg chip0516_779768 PBMC +12845 CAFRSYNTDKLIF TRAV20*01 TRAJ34*01 HLA-B*08:01 B2M MHCI RPIIRPATL NP InfluenzaA PMID:34811538 tetramer-sort yes amplicon-seq transitional T cells between effector and memory populations healthy healthy_8 chip0516_156857 PBMC +12847 CASSRWTGDNEAFF TRBV5-1*01 TRBJ1-1*01 HLA-A*02:01 B2M MHCI FLWSVFMLI IGRP HomoSapiens PMID:34811538 tetramer-sort yes amplicon-seq transitional T cells between effector and memory populations healthy healthy_6 chip0516_47357 PBMC +12848 CILPLAGGTSYGKLTF TRAV26-2*01 TRAJ52*01 CASSSGQAYEQYF TRBV7-8*01 TRBJ2-7*01 HLA-B*08:01 B2M MHCI FLRGRAYGL EBNA3A EBV PMID:34811538 tetramer-sort yes amplicon-seq effector memory T cells healthy healthy_8 chip0516_832089 PBMC +12849 CASSQGTEKLFF TRBV9*01 TRBJ1-4*01 HLA-A*02:01 B2M MHCI ALGIGILTV MART1 HomoSapiens PMID:34811538 tetramer-sort yes amplicon-seq effector memory T cells healthy healthy_7 chip0516_46517 PBMC +12850 CILPLAGGTSYGKLTF TRAV26-2*01 TRAJ52*01 CASSLGQAYEQYF TRBV7-8*01 TRBJ2-7*01 HLA-B*08:01 B2M MHCI FLRGRAYGL EBNA3A EBV PMID:34811538 tetramer-sort yes amplicon-seq central memory T cells healthy healthy_8 chip0516_831 PBMC +12851 CASSGLIVGGNTIYF TRBV2*01 TRBJ1-3*01 HLA-A*01:01 B2M MHCI GSHLVEALY INS HomoSapiens PMID:34811538 tetramer-sort yes amplicon-seq Naive T cells healthy healthy_9 chip0516_363133 PBMC +12852 CAVTLTLSSGAGRSPLTF TRAV21*01 TRAJ28*01 CASSLMGTGGLSEKLFF TRBV28*01 TRBJ1-4*01 HLA-B*08:01 B2M MHCI QAKWRLQTL EBNA3A EBV PMID:34811538 tetramer-sort yes amplicon-seq transitional T cells between effector and memory populations healthy healthy_8 chip0516_31025 PBMC +12853 CAVSDREGAQKLVF TRAV8-4*01 TRAJ54*01 CASSLVLLGNTEAFF TRBV7-3*01 TRBJ1-1*01 HLA-B*08:01 B2M MHCI RAKFKQLL BZLF1 EBV PMID:34811538 tetramer-sort yes amplicon-seq effector T cells healthy healthy_9 chip0516_649240 PBMC +12854 CAVRDTGRRALTF TRAV3*01 TRAJ5*01 CASSVPLARGPDEQFF TRBV9*01 TRBJ2-1*01 HLA-B*08:01 B2M MHCI FLKEKGGL Nef HIV-1 PMID:34811538 tetramer-sort yes amplicon-seq Naive T cells healthy healthy_9 chip0516_573884 PBMC +12855 CAYTTGGGADGLTF TRAV38-1*01 TRAJ45*01 CSVGRRLEAFF TRBV29-1*01 TRBJ1-1*01 HLA-B*08:01 B2M MHCI ILKLQVFL IAPP HomoSapiens PMID:34811538 tetramer-sort yes amplicon-seq Naive T cells healthy healthy_8 chip0516_492420 PBMC +12856 CASSSLYGGKETQYF TRBV7-9*01 TRBJ2-5*01 HLA-A*02:01 B2M MHCI RGPGRAFVTI GP160 HIV-1 PMID:34811538 tetramer-sort yes amplicon-seq Naive T cells healthy healthy_7 chip0516_108491 PBMC +12857 CASRGLVGSAGELFF TRBV19*01 TRBJ2-2*01 HLA-A*02:01 B2M MHCI YVLDHLIVV BRLF1 EBV PMID:34811538 tetramer-sort yes amplicon-seq effector memory T cells healthy healthy_6 chip0516_359111 PBMC +12858 CATTARDRGLEEQYF TRBV6-1*01 TRBJ2-7*01 HLA-A*02:01 B2M MHCI LLAGIGTVPI PGT HomoSapiens PMID:34811538 tetramer-sort yes amplicon-seq Naive T cells healthy healthy_7 chip0516_585250 PBMC +12859 CASSLGQAYEQYF TRBV7-8*01 TRBJ2-7*01 HLA-B*08:01 B2M MHCI FLRGRAYGL EBNA3A EBV PMID:34811538 tetramer-sort yes amplicon-seq effector memory T cells healthy healthy_8 chip0516_821725 PBMC +12860 CIVRPRE??tSNYKLTF TRAV26-1*01 TRAJ53*01 CASSLGQGDTEAFF TRBV5-1*01 TRBJ1-1*01 HLA-B*08:01 B2M MHCI MMIARFKM GAD2 HomoSapiens PMID:34811538 tetramer-sort yes amplicon-seq Naive T cells healthy healthy_9 chip0516_785531 PBMC +12861 CILPLAGGTSYGKLTF TRAV26-2*01 TRAJ52*01 CASSLGQAYEQYF TRBV7-8*01 TRBJ2-7*01 HLA-B*08:01 B2M MHCI FLRGRAYGL EBNA3A EBV PMID:34811538 tetramer-sort yes amplicon-seq effector memory T cells healthy healthy_8 chip0516_181371 PBMC +12862 CAVALSSKSTF TRAV8-3*01 TRAJ27*01 HLA-A*02:01 B2M MHCI CLGGLLTMV LMP2A EBV PMID:34811538 tetramer-sort yes amplicon-seq effector memory T cells healthy healthy_6 chip0516_592387 PBMC +12863 CASSAGTLSYEQYF TRBV5-1*01 TRBJ2-7*01 HLA-B*08:01 B2M MHCI QAKWRLQTL EBNA3A EBV PMID:34811538 tetramer-sort yes amplicon-seq Naive T cells healthy healthy_9 chip0516_577062 PBMC +12864 CAVLMDSNYQLIW TRAV21*01 TRAJ33*01 HLA-A*02:01 B2M MHCI CLGGLLTMV LMP2A EBV PMID:34811538 tetramer-sort yes amplicon-seq effector memory T cells healthy healthy_6 chip0516_188590 PBMC +12865 CAVALSSKSTF TRAV8-3*01 TRAJ27*01 HLA-A*02:01 B2M MHCI CLGGLLTMV LMP2A EBV PMID:34811538 tetramer-sort yes amplicon-seq effector memory T cells healthy healthy_6 chip0516_847399 PBMC +12866 CAVALSSKSTF TRAV8-3*01 TRAJ27*01 CASSGDGMNTEAFF TRBV10-2*01 TRBJ1-1*01 HLA-A*02:01 B2M MHCI CLGGLLTMV LMP2A EBV PMID:34811538 tetramer-sort yes amplicon-seq effector memory T cells healthy healthy_6 chip0516_524670 PBMC +12867 CAVELNYGGSQGNLIF TRAV39*01 TRAJ42*01 CASSQDGVPGGNEQYF TRBV4-1*01 TRBJ2-7*01 HLA-A*01:01 B2M MHCI CTELKLSDY NP InfluenzaA PMID:34811538 tetramer-sort yes amplicon-seq transitional T cells between effector and memory populations healthy healthy_8 chip0516_799754 PBMC +12868 CAVTLSSKSTF TRAV8-3*01 TRAJ27*01 CASSGDGMNTEAFF TRBV10-2*01 TRBJ1-1*01 HLA-A*02:01 B2M MHCI CLGGLLTMV LMP2A EBV PMID:34811538 tetramer-sort yes amplicon-seq effector memory T cells healthy healthy_6 chip0516_572457 PBMC +12869 CAVALSSKSTF TRAV8-3*01 TRAJ27*01 CASSGDGMNTEAFL TRBV10-2*01 TRBJ1-1*01 HLA-A*02:01 B2M MHCI CLGGLLTMV LMP2A EBV PMID:34811538 tetramer-sort yes amplicon-seq effector memory T cells healthy healthy_6 chip0516_128715 PBMC +12873 CAVLMDSNYQLIW TRAV12-3*01 TRAJ33*01 HLA-A*02:01 B2M MHCI CLGGLLTMV LMP2A EBV PMID:34811538 tetramer-sort yes amplicon-seq effector memory T cells healthy healthy_6 chip0516_408822 PBMC +12874 CATVGLcc?GFRTLTF TRAV17*01 TRAJ11*01 HLA-A*02:01 B2M MHCI FLYALALLL LMP2 EBV PMID:34811538 tetramer-sort yes amplicon-seq effector memory T cells healthy healthy_6 chip0516_873782 PBMC +12875 CAASIGF TRAV12-2*01 TRAJ11*01 HLA-A*02:01 B2M MHCI ALAGIGILTV MART1 HomoSapiens PMID:34811538 tetramer-sort yes amplicon-seq Naive T cells healthy healthy_6 chip0516_77094 PBMC +12876 CASSTGARGYTF TRBV19*01 TRBJ1-2*01 HLA-B*08:01 B2M MHCI HLKRNIVV GFAP HomoSapiens PMID:34811538 tetramer-sort yes amplicon-seq Naive T cells healthy healthy_8 chip0516_585482 PBMC +12877 CIVRVGGASWGKLQF TRAV26-1*01 TRAJ24*01 HLA-B*08:01 B2M MHCI RAKFKQLL BZLF1 EBV PMID:34811538 tetramer-sort yes amplicon-seq transitional T cells between effector and memory populations healthy healthy_8 chip0516_253037 PBMC +12878 CAVTLTLYSGAGSYQLTF TRAV21*01 TRAJ28*01 CASSLMGTGGLSEKLFF TRBV28*01 TRBJ1-4*01 HLA-B*08:01 B2M MHCI QAKWRLQTL EBNA3A EBV PMID:34811538 tetramer-sort yes amplicon-seq effector memory T cells healthy healthy_8 chip0516_589366 PBMC +12880 CASSHPGNTEAFF TRBV3-1*01 TRBJ1-1*01 HLA-A*02:01 B2M MHCI RGPGRAFVTI GP160 HIV-1 PMID:34811538 tetramer-sort yes amplicon-seq transitional T cells between effector and memory populations healthy healthy_7 chip0516_389689 PBMC +12881 CILPLAGGTSYGKLTF TRAV26-2*01 TRAJ52*01 CASSLGQAYEQYF TRBV7-8*01 TRBJ2-7*01 HLA-B*08:01 B2M MHCI FLRGRAYGL EBNA3A EBV PMID:34811538 tetramer-sort yes amplicon-seq effector memory T cells healthy healthy_8 chip0516_536865 PBMC +12883 CADSYGGSQGNLIF TRAV25*01 TRAJ42*01 HLA-B*08:01 B2M MHCI RAKFKQLL BZLF1 EBV PMID:34811538 tetramer-sort yes amplicon-seq Naive T cells healthy healthy_8 chip0516_665650 PBMC +12884 CVVNGDSGAGSYQLPF TRAV12-1*01 TRAJ28*01 CASSLQTSGSRDNEQFF TRBV6-2*01,TRBV6-3*01 TRBJ2-1*01 HLA-A*02:01 B2M MHCI CLGGLLTMV LMP2A EBV PMID:34811538 tetramer-sort yes amplicon-seq central memory T cells healthy healthy_6 chip0516_678757 PBMC +12885 CAASPPKLIF TRAV29/DV5*01 TRAJ34*01 CASSSLVDNEQFF TRBV7-3*01 TRBJ2-1*01 HLA-B*08:01 B2M MHCI RAKFKQLL BZLF1 EBV PMID:34811538 tetramer-sort yes amplicon-seq effector memory T cells healthy healthy_9 chip0516_256995 PBMC +12886 CILPLAGGTSYGKLTF TRAV26-2*01 TRAJ52*01 CASSLGQAYEQYF TRBV7-8*01 TRBJ2-7*01 HLA-B*08:01 B2M MHCI FLRGRAYGL EBNA3A EBV PMID:34811538 tetramer-sort yes amplicon-seq central memory T cells healthy healthy_8 chip0516_203126 PBMC +12887 CATDEGSSYKLIF TRAV17*01 TRAJ12*01 CASSPPLGGGYTF TRBV7-9*01 TRBJ1-2*01 HLA-B*08:01 B2M MHCI HLKRNIVV GFAP HomoSapiens PMID:34811538 tetramer-sort yes amplicon-seq Naive T cells healthy healthy_8 chip0516_177031 PBMC +12888 CAVSVGTNAGKSTF TRAV8-4*01 TRAJ27*01 CASSQTSQRGYNTGELFF TRBV7-6*01 TRBJ2-2*01 HLA-B*08:01 B2M MHCI WPTVRERM Nef HIV-1 PMID:34811538 tetramer-sort yes amplicon-seq Naive T cells healthy healthy_8 chip0516_729648 PBMC +12889 CT*VRRYa?tTLTKF*F TRAV19*01 TRAJ21*01 HLA-B*08:01 B2M MHCI RAKFKQLL BZLF1 EBV PMID:34811538 tetramer-sort yes amplicon-seq Naive T cells healthy healthy_9 chip0516_713193 PBMC +12890 CAMSISNFGNEKLTF TRAV12-3*01 TRAJ48*01 CASSQGLAGGRSYNEQFF TRBV18*01 TRBJ2-1*01 HLA-A*02:01 B2M MHCI LLAGIGTVPI PGT HomoSapiens PMID:34811538 tetramer-sort yes amplicon-seq Naive T cells healthy healthy_7 chip0516_537027 PBMC +12892 CASSSGQAYEQYF TRBV7-8*01 TRBJ2-7*01 HLA-B*08:01 B2M MHCI FLRGRAYGL EBNA3A EBV PMID:34811538 tetramer-sort yes amplicon-seq central memory T cells healthy healthy_8 chip0516_645622 PBMC +12893 GVLNRPNASGLSF TRAV12-1*01 TRAJ20*01 HLA-A*02:01 B2M MHCI GLCTLVAML BLMF1 EBV PMID:34811538 tetramer-sort yes amplicon-seq effector memory T cells healthy healthy_7 chip0516_236070 PBMC +12894 CAVQADSSASKIIF TRAV20*01 TRAJ3*01 CSPRDLNSYEQYF TRBV20-1*01 TRBJ2-7*01 HLA-B*08:01 B2M MHCI ALKCKGFHV NP InfluenzaA PMID:34811538 tetramer-sort yes amplicon-seq Naive T cells healthy healthy_8 chip0516_874650 PBMC +12895 CASSLGGEQYF TRBV7-9*01 TRBJ2-7*01 HLA-A*02:01 B2M MHCI LLAGIGTVPI PGT HomoSapiens PMID:34811538 tetramer-sort yes amplicon-seq Naive T cells healthy healthy_7 chip0516_237472 PBMC +12896 CAVNGAGNMLTF TRAV21*01 TRAJ39*01 HLA-A*01:01 B2M MHCI VTDAAHLLI ZNT8 HomoSapiens PMID:34811538 tetramer-sort yes amplicon-seq Naive T cells healthy healthy_8 chip0516_173437 PBMC +12897 CILPLAGGTSYGKLTF TRAV26-2*01 TRAJ52*01 CASSLGQAYEQYF TRBV7-8*01 TRBJ2-7*01 HLA-B*08:01 B2M MHCI FLRGRAYGL EBNA3A EBV PMID:34811538 tetramer-sort yes amplicon-seq effector memory T cells healthy healthy_8 chip0516_134639 PBMC +12898 CAVKTDTNAGKSTF TRAV12-2*01 TRAJ27*01 HLA-B*08:01 B2M MHCI FLRGRAYGL EBNA3A EBV PMID:34811538 tetramer-sort yes amplicon-seq effector memory T cells healthy healthy_8 chip0516_815044 PBMC +12899 CAMSPSNFGNEKLTF TRAV12-3*01 TRAJ48*01 CASSPGTgc??cgNTGELFF TRBV4-3*01 TRBJ2-2*01 HLA-A*02:01 B2M MHCI LLAGIGTVPI PGT HomoSapiens PMID:34811538 tetramer-sort yes amplicon-seq Naive T cells healthy healthy_6 chip0516_830900 PBMC +12900 CVVIQYGNKLVF TRAV12-1*01 TRAJ47*01 CASKGLPSTDTQYF TRBV28*01 TRBJ2-3*01 HLA-A*02:01 B2M MHCI CLGGLLTMV LMP2A EBV PMID:34811538 tetramer-sort yes amplicon-seq Naive T cells healthy healthy_7 chip0516_726037 PBMC +12901 CSADTGDGNSPLHF TRBV20-1*01 TRBJ1-6*01 HLA-A*02:01 B2M MHCI RGPGRAFVTI GP160 HIV-1 PMID:34811538 tetramer-sort yes amplicon-seq Naive T cells healthy healthy_7 chip0516_387035 PBMC +12902 CASSGDGMNTEAFF TRBV10-2*01 TRBJ1-1*01 HLA-A*02:01 B2M MHCI CLGGLLTMV LMP2A EBV PMID:34811538 tetramer-sort yes amplicon-seq central memory T cells healthy healthy_6 chip0516_73199 PBMC +12903 CAFGASNFGNEKLTF TRAV12-3*01 TRAJ48*01 CASSLVGAGGTQETQYF TRBV11-2*01 TRBJ2-5*01 HLA-A*02:01 B2M MHCI LLAGIGTVPI PGT HomoSapiens PMID:34811538 tetramer-sort yes amplicon-seq Naive T cells healthy healthy_7 chip0516_87311 PBMC +12904 CASSLMGPGGLSEKLFF TRBV28*01 TRBJ1-4*01 HLA-B*08:01 B2M MHCI QAKWRLQTL EBNA3A EBV PMID:34811538 tetramer-sort yes amplicon-seq transitional T cells between effector and memory populations healthy healthy_8 chip0516_797008 PBMC +12905 CAEG*DPRLMF TRAV36/DV7*01 TRAJ31*01 CASSYTYEQYF TRBV6-2*01,TRBV6-3*01 TRBJ2-7*01 HLA-A*02:01 B2M MHCI AAGIGILTV MART1 HomoSapiens PMID:34811538 tetramer-sort yes amplicon-seq Naive T cells healthy healthy_7 chip0516_109264 PBMC +12906 CILPLAGGTSYGKLTF TRAV26-2*01 TRAJ52*01 CASSLGQAYEQYF TRBV7-8*01 TRBJ2-7*01 HLA-B*08:01 B2M MHCI FLRGRAYGL EBNA3A EBV PMID:34811538 tetramer-sort yes amplicon-seq central memory T cells healthy healthy_8 chip0516_712586 PBMC +12907 CSADGGDTEAFF TRBV20-1*01 TRBJ1-1*01 HLA-A*02:01 B2M MHCI YLLEMLWRL LMP1 EBV PMID:34811538 tetramer-sort yes amplicon-seq central memory T cells healthy healthy_7 chip0516_844857 PBMC +12908 CILPLAGGTSYGKLTF TRAV26-2*01 TRAJ52*01 CANSLGQAYEQYF TRBV7-8*01 TRBJ2-7*01 HLA-B*08:01 B2M MHCI FLRGRAYGL EBNA3A EBV PMID:34811538 tetramer-sort yes amplicon-seq effector memory T cells healthy healthy_8 chip0516_219203 PBMC +12909 CASSILSGVTYNEQFF TRBV19*01 TRBJ2-1*01 HLA-A*01:01 B2M MHCI LVSDGGPNLY PB1 InfluenzaA PMID:34811538 tetramer-sort yes amplicon-seq Naive T cells healthy healthy_9 chip0516_366975 PBMC +12910 CASSLGQAHEQYF TRBV7-8*01 TRBJ2-7*01 HLA-B*08:01 B2M MHCI FLRGRAYGL EBNA3A EBV PMID:34811538 tetramer-sort yes amplicon-seq effector memory T cells healthy healthy_8 chip0516_25605 PBMC +12911 CASNGDGMNTEAFF TRBV10-2*01 TRBJ1-1*01 HLA-A*02:01 B2M MHCI CLGGLLTMV LMP2A EBV PMID:34811538 tetramer-sort yes amplicon-seq effector memory T cells healthy healthy_6 chip0516_188040 PBMC +12912 CASSLREFHETQYF TRBV6-1*01 TRBJ2-5*01 HLA-B*08:01 B2M MHCI FLRGRAYGL EBNA3A EBV PMID:34811538 tetramer-sort yes amplicon-seq transitional T cells between effector and memory populations healthy healthy_8 chip0516_202222 PBMC +12913 CILPLAGGTSYGKLTF TRAV26-2*01 TRAJ52*01 CASSLGQAYEQYF TRBV7-8*01 TRBJ2-7*01 HLA-B*08:01 B2M MHCI FLRGRAYGL EBNA3A EBV PMID:34811538 tetramer-sort yes amplicon-seq effector memory T cells healthy healthy_8 chip0516_89620 PBMC +12914 CAMGRSNFGNEKLTF TRAV12-3*01 TRAJ48*01 CASSLVGGGDNSPLHF TRBV28*01 TRBJ1-6*01 HLA-A*02:01 B2M MHCI LLAGIGTVPI PGT HomoSapiens PMID:34811538 tetramer-sort yes amplicon-seq Naive T cells healthy healthy_6 chip0516_862020 PBMC +12915 CILPLAGGTSYGKLTF TRAV26-2*01 TRAJ52*01 CASSLGQAYEQYF TRBV7-8*01 TRBJ2-7*01 HLA-B*08:01 B2M MHCI FLRGRAYGL EBNA3A EBV PMID:34811538 tetramer-sort yes amplicon-seq effector memory T cells healthy healthy_8 chip0516_573971 PBMC +12916 CAVTLNLSSGAGRSPLTF TRAV21*01 TRAJ28*01 CASSLMGTGGLSEKLLF TRBV28*01 TRBJ1-4*01 HLA-B*08:01 B2M MHCI QAKWRLQTL EBNA3A EBV PMID:34811538 tetramer-sort yes amplicon-seq transitional T cells between effector and memory populations healthy healthy_8 chip0516_272637 PBMC +12917 CAEDVNNDMRF TRAV5*01 TRAJ43*01 CSVLSDSSYNEQFF TRBV20-1*01 TRBJ2-1*01 HLA-A*02:01 B2M MHCI GLCTLVAML BLMF1 EBV PMID:34811538 tetramer-sort yes amplicon-seq effector T cells healthy healthy_6 chip0516_455046 PBMC +12918 CASSLGQAYEQYF TRBV7-8*01 TRBJ2-7*01 HLA-B*08:01 B2M MHCI FLRGRAYGL EBNA3A EBV PMID:34811538 tetramer-sort yes amplicon-seq effector memory T cells healthy healthy_8 chip0516_46547 PBMC +12920 CAVALSSKSTF TRAV8-3*01 TRAJ27*01 HLA-A*02:01 B2M MHCI CLGGLLTMV LMP2A EBV PMID:34811538 tetramer-sort yes amplicon-seq effector memory T cells healthy healthy_6 chip0516_68535 PBMC +12921 *AGKRRg?cTYKYTF TRAV27*01 TRAJ40*01 CASSLWGSGNTIYF TRBV5-5*01 TRBJ1-3*01 HLA-B*08:01 B2M MHCI EAKQKGFVPF GAD2 HomoSapiens PMID:34811538 tetramer-sort yes amplicon-seq Naive T cells healthy healthy_8 chip0516_823677 PBMC +12924 CASSGAGMNTEAFF TRBV10-2*01 TRBJ1-1*01 HLA-A*02:01 B2M MHCI CLGGLLTMV LMP2A EBV PMID:34811538 tetramer-sort yes amplicon-seq effector memory T cells healthy healthy_6 chip0516_243495 PBMC +12925 CAVLMDSNHQLIW TRAV12-3*01 TRAJ33*01 CASSGDGMNTEAFF TRBV10-2*01 TRBJ1-1*01 HLA-A*02:01 B2M MHCI CLGGLLTMV LMP2A EBV PMID:34811538 tetramer-sort yes amplicon-seq effector T cells healthy healthy_6 chip0516_391705 PBMC +12926 CVVQPLYARLMF TRAV12-1*01 TRAJ31*01 CSASGRGQGFRNEQFF TRBV20-1*01 TRBJ2-1*01 HLA-B*08:01 B2M MHCI FQQDKHYDL GAD2 HomoSapiens PMID:34811538 tetramer-sort yes amplicon-seq Naive T cells healthy healthy_9 chip0516_181674 PBMC +12927 CAANTaa?CRQSTF TRAV29/DV5*01 TRAJ27*01 CASSQGSYNEQFF TRBV19*01 TRBJ2-1*01 HLA-A*01:01 B2M MHCI LTSLTILQLY G6PC2 HomoSapiens PMID:34811538 tetramer-sort yes amplicon-seq Naive T cells healthy healthy_8 chip0516_451338 PBMC +12928 CVVNNTG??gSSYKLIF TRAV12-1*01 TRAJ12*01 CASSPGGRAGDYNEQFF TRBV6-2*01,TRBV6-3*01 TRBJ2-1*01 HLA-B*08:01 B2M MHCI RAKFKQLL BZLF1 EBV PMID:34811538 tetramer-sort yes amplicon-seq effector memory T cells healthy healthy_8 chip0516_412127 PBMC +12929 CILPLAGGTSYGKLTF TRAV26-2*01 TRAJ52*01 CASSLGQAYEQYF TRBV7-8*01 TRBJ2-7*01 HLA-B*08:01 B2M MHCI FLRGRAYGL EBNA3A EBV PMID:34811538 tetramer-sort yes amplicon-seq effector memory T cells healthy healthy_8 chip0516_173036 PBMC +12930 CASSYTGVFEAFF TRBV5-1*01 TRBJ1-1*01 HLA-B*08:01 B2M MHCI HPRYFNQL GAD2 HomoSapiens PMID:34811538 tetramer-sort yes amplicon-seq Naive T cells healthy healthy_8 chip0516_223242 PBMC +12931 CAVALSSKSTS TRAV8-3*01 TRAJ27*01 CASSGDGMNTEAFF TRBV10-2*01 TRBJ1-1*01 HLA-A*02:01 B2M MHCI CLGGLLTMV LMP2A EBV PMID:34811538 tetramer-sort yes amplicon-seq effector memory T cells healthy healthy_6 chip0516_662057 PBMC +12933 CASSLMGTGGLSEKLFF TRBV28*01 TRBJ1-4*01 HLA-B*08:01 B2M MHCI QAKWRLQTL EBNA3A EBV PMID:34811538 tetramer-sort yes amplicon-seq transitional T cells between effector and memory populations healthy healthy_8 chip0516_717760 PBMC +12935 CVVSSAGTALIF TRAV12-1*01 TRAJ15*01 HLA-B*08:01 B2M MHCI FQQDKHYDL GAD2 HomoSapiens PMID:34811538 tetramer-sort yes amplicon-seq Naive T cells healthy healthy_8 chip0516_766748 PBMC +12936 CIKPLCPIEDTGRRALTF TRAV26-1*01 TRAJ5*01 CASSFTGGAYEQYF TRBV7-6*01 TRBJ2-7*01 HLA-B*08:01 B2M MHCI HARIKLKV PTPRN HomoSapiens PMID:34811538 tetramer-sort yes amplicon-seq effector memory T cells healthy healthy_8 chip0516_849991 PBMC +12937 CILPLAGGTSYGKLTF TRAV26-2*01 TRAJ52*01 CASSSGQAYEQYF TRBV7-8*01 TRBJ2-7*01 HLA-B*08:01 B2M MHCI FLRGRAYGL EBNA3A EBV PMID:34811538 tetramer-sort yes amplicon-seq effector memory T cells healthy healthy_8 chip0516_37940 PBMC +12938 CILPLAGGTSYGKLTF TRAV26-2*01 TRAJ52*01 CASSSGQAYEQYF TRBV7-8*01 TRBJ2-7*01 HLA-B*08:01 B2M MHCI FLRGRAYGL EBNA3A EBV PMID:34811538 tetramer-sort yes amplicon-seq effector T cells healthy healthy_8 chip0516_2472 PBMC +12939 CAVTDAEGAQKLVF TRAV8-6*01 TRAJ54*01 CASSLFLIAARGHNEQFF TRBV11-3*01 TRBJ2-1*01 HLA-B*08:01 B2M MHCI RAKFKQLL BZLF1 EBV PMID:34811538 tetramer-sort yes amplicon-seq effector T cells healthy healthy_8 chip0516_424919 PBMC +12940 CAVTGFQKLVF TRAV12-2*01 TRAJ8*01 CASSPPGQGTYEQYF TRBV3-1*01 TRBJ2-7*01 HLA-A*02:01 B2M MHCI LLAGIGTVPI PGT HomoSapiens PMID:34811538 tetramer-sort yes amplicon-seq Naive T cells healthy healthy_6 chip0516_716849 PBMC +12941 CAAWGYQKVTF TRAV13-1*01 TRAJ13*01 HLA-B*08:01 B2M MHCI RAKFKQLL BZLF1 EBV PMID:34811538 tetramer-sort yes amplicon-seq effector T cells healthy healthy_8 chip0516_79951 PBMC +12942 CAGGSQGNLIF TRAV12-3*01 TRAJ42*01 HLA-A*02:01 B2M MHCI YLQQNWWTL LMP1 EBV PMID:34811538 tetramer-sort yes amplicon-seq Naive T cells healthy healthy_7 chip0516_754296 PBMC +12943 CASSLDMSSSYNEQFF TRBV27*01 TRBJ2-1*01 HLA-A*02:01 B2M MHCI YVLDHLIVV BRLF1 EBV PMID:34811538 tetramer-sort yes amplicon-seq effector memory T cells healthy healthy_6 chip0516_162643 PBMC +12944 CAMSERIMg?aGSQGNLIF TRAV12-3*01 TRAJ42*01 CSAPVREQYF TRBV20-1*01 TRBJ2-7*01 HLA-A*02:01 B2M MHCI LLAGIGTVPI PGT HomoSapiens PMID:34811538 tetramer-sort yes amplicon-seq Naive T cells healthy healthy_7 chip0516_225634 PBMC +12946 CAVALSSKSTF TRAV8-3*01 TRAJ27*01 HLA-A*02:01 B2M MHCI CLGGLLTMV LMP2A EBV PMID:34811538 tetramer-sort yes amplicon-seq effector memory T cells healthy healthy_6 chip0516_642983 PBMC +12947 CAASETSYDKVIF TRAV13-1*01 TRAJ50*01 CASSSTSAGDNEQFF TRBV7-9*01 TRBJ2-1*01 HLA-B*08:01 B2M MHCI RAKFKQLL BZLF1 EBV PMID:34811538 tetramer-sort yes amplicon-seq effector memory T cells healthy healthy_10 chip0516_769777 PBMC +12948 CASSEGASTDTQYF TRBV2*01 TRBJ2-3*01 HLA-A*02:01 B2M MHCI LLAGIGTVPI PGT HomoSapiens PMID:34811538 tetramer-sort yes amplicon-seq Naive T cells healthy healthy_7 chip0516_469657 PBMC +12949 CILPLAGGTSYGKLTF TRAV26-2*01 TRAJ52*01 CASSLGQAYEQYF TRBV7-8*01 TRBJ2-7*01 HLA-B*08:01 B2M MHCI FLRGRAYGL EBNA3A EBV PMID:34811538 tetramer-sort yes amplicon-seq effector memory T cells healthy healthy_8 chip0516_503381 PBMC +12951 CGTELR??gNNRLAF TRAV30*01 TRAJ7*01 CSAKDRDANTDTQYF TRBV20-1*01 TRBJ2-3*01 HLA-B*08:01 B2M MHCI MALWMRLL INS HomoSapiens PMID:34811538 tetramer-sort yes amplicon-seq Naive T cells healthy healthy_8 chip0516_725368 PBMC +12952 CAASINYGQNFVF TRAV13-1*01 TRAJ26*01 CSFGQRNTEAFF TRBV29-1*01 TRBJ1-1*01 HLA-B*08:01 B2M MHCI YLKTNLFL G6PC2 HomoSapiens PMID:34811538 tetramer-sort yes amplicon-seq Naive T cells healthy healthy_8 chip0516_331225 PBMC +12953 CAVRGADSSYKLIF TRAV8-6*01 TRAJ12*01 CASSQDRRGYGYTF TRBV4-1*01 TRBJ1-2*01 HLA-B*08:01 B2M MHCI YLKDQQLL gp160 HIV-1 PMID:34811538 tetramer-sort yes amplicon-seq Naive T cells healthy healthy_8 chip0516_307630 PBMC +12954 CAVSDGGYQKVTF TRAV8-6*01 TRAJ13*01 CASSLGAEAFF TRBV7-9*01 TRBJ1-1*01 HLA-B*08:01 B2M MHCI YAKWKLCSA ZNT8 HomoSapiens PMID:34811538 tetramer-sort yes amplicon-seq Naive T cells healthy healthy_8 chip0516_532603 PBMC +12955 CASSNHGGGELFF TRBV28*01 TRBJ2-2*01 HLA-B*08:01 B2M MHCI QAKWRLQTL EBNA3A EBV PMID:34811538 tetramer-sort yes amplicon-seq effector memory T cells healthy healthy_8 chip0516_168934 PBMC +12957 CAGWVSWa?aYGNKLVF TRAV35*01 TRAJ47*01 CASSSRSSYEQYF TRBV19*01 TRBJ2-7*01 HLA-A*02:01 B2M MHCI GILGFVFTL M1 InfluenzaA PMID:34811538 tetramer-sort yes amplicon-seq transitional T cells between effector and memory populations healthy healthy_7 chip0516_787999 PBMC +12958 CASSPFSGTDNYGYTF TRBV18*01 TRBJ1-2*01 HLA-A*02:01 B2M MHCI RMMEYGTTMV GAD65 HomoSapiens PMID:34811538 tetramer-sort yes amplicon-seq Naive T cells healthy healthy_7 chip0516_569074 PBMC +12959 CAVAWLCSGAGSYLRTS TRAV8-3*01 TRAJ28*01 HLA-B*08:01 B2M MHCI QAKWRLQTL EBNA3A EBV PMID:34811538 tetramer-sort yes amplicon-seq transitional T cells between effector and memory populations healthy healthy_8 chip0516_449960 PBMC +12961 CAVKTDTNAGKSTF TRAV12-2*01 TRAJ27*01 HLA-B*08:01 B2M MHCI FLRGRAYGL EBNA3A EBV PMID:34811538 tetramer-sort yes amplicon-seq effector memory T cells healthy healthy_8 chip0516_241186 PBMC +12962 CASSGDGMNTEAFF TRBV10-2*01 TRBJ1-1*01 HLA-A*02:01 B2M MHCI CLGGLLTMV LMP2A EBV PMID:34811538 tetramer-sort yes amplicon-seq effector memory T cells healthy healthy_6 chip0516_274399 PBMC +12963 CASSFEISYNEQFF TRBV28*01 TRBJ2-1*01 HLA-A*02:01 B2M MHCI RGPGRAFVTI GP160 HIV-1 PMID:34811538 tetramer-sort yes amplicon-seq effector memory T cells healthy healthy_7 chip0516_192035 PBMC +12964 CASRGLVGSAGELFF TRBV19*01 TRBJ2-2*01 HLA-A*02:01 B2M MHCI YVLDHLIVV BRLF1 EBV PMID:34811538 tetramer-sort yes amplicon-seq effector memory T cells healthy healthy_6 chip0516_788959 PBMC +12966 CAVMNARLMF TRAV12-2*01 TRAJ31*01 CASSLIGTGETYEQYF TRBV7-9*01 TRBJ2-7*01 HLA-A*02:01 B2M MHCI SLYNTVATLY GAG HIV-1 PMID:34811538 tetramer-sort yes amplicon-seq Naive T cells healthy healthy_7 chip0516_35233 PBMC +12967 CSASYRGYEAFF TRBV20-1*01 TRBJ1-1*01 HLA-B*08:01 B2M MHCI RAKFKQLL BZLF1 EBV PMID:34811538 tetramer-sort yes amplicon-seq Naive T cells healthy healthy_8 chip0516_447128 PBMC +12968 CASSYTLGRGEIEQFF TRBV6-5*01 TRBJ2-1*01 HLA-A*02:01 B2M MHCI ALAGIGILTV MART1 HomoSapiens PMID:34811538 tetramer-sort yes amplicon-seq Naive T cells healthy healthy_6 chip0516_364757 PBMC +12970 CILPLAGGTSYGKLTF TRAV26-2*01 TRAJ52*01 CASSLGQAYEQYF TRBV7-8*01 TRBJ2-7*01 HLA-B*08:01 B2M MHCI FLRGRAYGL EBNA3A EBV PMID:34811538 tetramer-sort yes amplicon-seq effector memory T cells healthy healthy_8 chip0516_710402 PBMC +12972 CSVGTGGTNEKLFF TRBV29-1*01 TRBJ1-4*01 HLA-A*02:01 B2M MHCI GLCTLVAML BLMF1 EBV PMID:34811538 tetramer-sort yes amplicon-seq effector T cells healthy healthy_6 chip0516_620678 PBMC +12973 CAASMGHALNF TRAV29/DV5*01 TRAJ41*01 CASSFGTGMGYEQYF TRBV7-3*01 TRBJ2-7*01 HLA-B*08:01 B2M MHCI RAKFKQLL BZLF1 EBV PMID:34811538 tetramer-sort yes amplicon-seq Naive T cells healthy healthy_8 chip0516_814955 PBMC +12974 CASSLREFHETQYF TRBV6-1*01 TRBJ2-5*01 HLA-B*08:01 B2M MHCI FLRGRAYGL EBNA3A EBV PMID:34811538 tetramer-sort yes amplicon-seq effector memory T cells healthy healthy_8 chip0516_177337 PBMC +12975 CAAINNAGNMLTF TRAV23/DV6*01 TRAJ39*01 CASSLGSPLHF TRBV12-3*01,TRBV12-4*01 TRBJ1-6*01 HLA-A*01:01 B2M MHCI VTDAAHLLI ZNT8 HomoSapiens PMID:34811538 tetramer-sort yes amplicon-seq central memory T cells healthy healthy_8 chip0516_157278 PBMC +12977 CASSTSGPTDTQYF TRBV12-3*01,TRBV12-4*01 TRBJ2-3*01 HLA-A*02:01 B2M MHCI VLFGLGFAI IGRP HomoSapiens PMID:34811538 tetramer-sort yes amplicon-seq Naive T cells healthy healthy_6 chip0516_151432 PBMC +12978 CALIPISIRGAGNNRKLIW TRAV9-2*01 TRAJ38*01 HLA-A*02:01 B2M MHCI CINGVCWTV NS3 HCV PMID:34811538 tetramer-sort yes amplicon-seq Naive T cells healthy healthy_6 chip0516_329405 PBMC +12980 CAYSFGNEKLTF TRAV38-1*01 TRAJ48*01 CASSQVVRQPQHF TRBV4-1*01 TRBJ1-5*01 HLA-A*02:01 B2M MHCI ALWMRLLPL PREINS HomoSapiens PMID:34811538 tetramer-sort yes amplicon-seq Naive T cells healthy healthy_6 chip0516_772457 PBMC +12981 CAGGSNYKLTF TRAV12-1*01 TRAJ53*01 CASSIFGTGGTEAFF TRBV19*01 TRBJ1-1*01 HLA-A*02:01 B2M MHCI GILGFVFTL M1 InfluenzaA PMID:34811538 tetramer-sort yes amplicon-seq Naive T cells healthy healthy_7 chip0516_348545 PBMC +12982 CSARDRVGNGYTF TRBV20-1*01 TRBJ1-2*01 HLA-A*02:01 B2M MHCI GLCTLVAML BLMF1 EBV PMID:34811538 tetramer-sort yes amplicon-seq effector memory T cells healthy healthy_6 chip0516_122936 PBMC +12984 CASSPDRATYEQYF TRBV27*01 TRBJ2-7*01 HLA-A*02:01 B2M MHCI ALAGIGILTV MART1 HomoSapiens PMID:34811538 tetramer-sort yes amplicon-seq Naive T cells healthy healthy_7 chip0516_347429 PBMC +12985 CAVALSSKSTF TRAV8-3*01 TRAJ27*01 HLA-A*02:01 B2M MHCI CLGGLLTMV LMP2A EBV PMID:34811538 tetramer-sort yes amplicon-seq effector memory T cells healthy healthy_6 chip0516_681323 PBMC +12986 CAENVNYGQNFVF TRAV13-2*01 TRAJ26*01 CASRDGTGELFF TRBV4-1*01 TRBJ2-2*01 HLA-B*08:01 B2M MHCI HLKRNIVV GFAP HomoSapiens PMID:34811538 tetramer-sort yes amplicon-seq Naive T cells healthy healthy_8 chip0516_168081 PBMC +12987 CILPLAGGTSYGKPTF TRAV26-2*01 TRAJ52*01 CASSLGQAYEQYF TRBV7-8*01 TRBJ2-7*01 HLA-B*08:01 B2M MHCI FLRGRAYGL EBNA3A EBV PMID:34811538 tetramer-sort yes amplicon-seq effector memory T cells healthy healthy_8 chip0516_481100 PBMC +12988 CASSSSALISDEQFF TRBV11-2*01 TRBJ2-1*01 HLA-A*02:01 B2M MHCI YVLDHLIVV BRLF1 EBV PMID:34811538 tetramer-sort yes amplicon-seq effector T cells healthy healthy_6 chip0516_687196 PBMC +12989 CASSTSASGVEKLFF TRBV19*01 TRBJ1-4*01 HLA-A*02:01 B2M MHCI LLAGIGTVPI PGT HomoSapiens PMID:34811538 tetramer-sort yes amplicon-seq Naive T cells healthy healthy_6 chip0516_112103 PBMC +12990 CASSLGQAYEQYF TRBV7-8*01 TRBJ2-7*01 HLA-B*08:01 B2M MHCI FLRGRAYGL EBNA3A EBV PMID:34811538 tetramer-sort yes amplicon-seq effector memory T cells healthy healthy_8 chip0516_134092 PBMC +12991 CASSGDGMNTEAFF TRBV10-2*01 TRBJ1-1*01 HLA-A*02:01 B2M MHCI CLGGLLTMV LMP2A EBV PMID:34811538 tetramer-sort yes amplicon-seq effector memory T cells healthy healthy_6 chip0516_685616 PBMC +12992 CILPLAGGTSYGKLTF TRAV26-2*01 TRAJ52*01 CASSLGQAYEQYF TRBV7-8*01 TRBJ2-7*01 HLA-B*08:01 B2M MHCI FLRGRAYGL EBNA3A EBV PMID:34811538 tetramer-sort yes amplicon-seq effector T cells healthy healthy_8 chip0516_593630 PBMC +12995 CILPLAGGTSYGKLTF TRAV26-2*01 TRAJ52*01 HLA-B*08:01 B2M MHCI FLRGRAYGL EBNA3A EBV PMID:34811538 tetramer-sort yes amplicon-seq effector T cells healthy healthy_8 chip0516_300898 PBMC +12996 CASQGFtg??gtNTEAFF TRBV9*01 TRBJ1-1*01 HLA-B*08:01 B2M MHCI RPIIRPATL NP InfluenzaA PMID:34811538 tetramer-sort yes amplicon-seq transitional T cells between effector and memory populations healthy healthy_8 chip0516_514650 PBMC +12997 CASSQGRDPIAEAFF TRBV3-1*01 TRBJ1-1*01 HLA-B*08:01 B2M MHCI RAKFKQLL BZLF1 EBV PMID:34811538 tetramer-sort yes amplicon-seq effector memory T cells healthy healthy_8 chip0516_134005 PBMC +12998 CASGSIVNTEAFF TRBV3-1*01 TRBJ1-1*01 HLA-A*02:01 B2M MHCI YVLDHLIVV BRLF1 EBV PMID:34811538 tetramer-sort yes amplicon-seq effector memory T cells healthy healthy_6 chip0516_155361 PBMC +12999 CAVALSSKSTF TRAV8-3*01 TRAJ27*01 HLA-A*02:01 B2M MHCI CLGGLLTMV LMP2A EBV PMID:34811538 tetramer-sort yes amplicon-seq effector memory T cells healthy healthy_6 chip0516_555377 PBMC +13000 CVVVISNFGNEKLTF TRAV12-1*01 TRAJ48*01 CASSELFGQTSNQPQHF TRBV2*01 TRBJ1-5*01 HLA-A*02:01 B2M MHCI LLAGIGTVPI PGT HomoSapiens PMID:34811538 tetramer-sort yes amplicon-seq Naive T cells healthy healthy_7 chip0516_341791 PBMC +13001 CMEDSNYQLIW TRAV12-1*01 TRAJ33*01 CASSAPSYNEQFF TRBV9*01 TRBJ2-1*01 HLA-A*02:01 B2M MHCI LLNATDIAV GP160 HIV-1 PMID:34811538 tetramer-sort yes amplicon-seq Naive T cells healthy healthy_7 chip0516_203221 PBMC +13002 CAEDHALNF TRAV23/DV6*01 TRAJ41*01 HLA-A*02:01 B2M MHCI GLCTLVAML BLMF1 EBV PMID:34811538 tetramer-sort yes amplicon-seq effector T cells healthy healthy_6 chip0516_22982 PBMC +13003 CASSLGQAYEQYF TRBV7-8*01 TRBJ2-7*01 HLA-B*08:01 B2M MHCI FLRGRAYGL EBNA3A EBV PMID:34811538 tetramer-sort yes amplicon-seq central memory T cells healthy healthy_8 chip0516_705418 PBMC +13004 CAYRSAGNSGYALNF TRAV38-2/DV8*01 TRAJ41*01 CASSLESNNEQFF TRBV13*01 TRBJ2-1*01 HLA-B*08:01 B2M MHCI MMIARFKM GAD2 HomoSapiens PMID:34811538 tetramer-sort yes amplicon-seq Naive T cells healthy healthy_8 chip0516_787165 PBMC +13006 CASSLGQAYEQYS TRBV7-8*01 TRBJ2-7*01 HLA-B*08:01 B2M MHCI FLRGRAYGL EBNA3A EBV PMID:34811538 tetramer-sort yes amplicon-seq effector memory T cells healthy healthy_8 chip0516_89737 PBMC +13007 CASSPLGGADGYTF TRBV6-1*01 TRBJ1-2*01 HLA-A*02:01 B2M MHCI FLYALALLL LMP2 EBV PMID:34811538 tetramer-sort yes amplicon-seq effector memory T cells healthy healthy_6 chip0516_409871 PBMC +13008 CILPLAGGTSYGKLTF TRAV26-2*01 TRAJ52*01 CASSLGQAYEQYF TRBV7-8*01 TRBJ2-7*01 HLA-B*08:01 B2M MHCI FLRGRAYGL EBNA3A EBV PMID:34811538 tetramer-sort yes amplicon-seq effector memory T cells healthy healthy_8 chip0516_202891 PBMC +13009 CAVTLTLYSGAGSYQLTF TRAV21*01 TRAJ28*01 CASSLMGTGGLSEKLFF TRBV28*01 TRBJ1-4*01 HLA-B*08:01 B2M MHCI QAKWRLQTL EBNA3A EBV PMID:34811538 tetramer-sort yes amplicon-seq transitional T cells between effector and memory populations healthy healthy_8 chip0516_254463 PBMC +13010 CARSIRSASAQYF TRBV19*01 TRBJ2-7*01 HLA-A*02:01 B2M MHCI GILGFVFTL M1 InfluenzaA PMID:34811538 tetramer-sort yes amplicon-seq transitional T cells between effector and memory populations healthy healthy_7 chip0516_53088 PBMC +13011 CILPLAGGTSYGKLTF TRAV26-2*01 TRAJ52*01 CASSLGQAYEQYF TRBV7-8*01 TRBJ2-7*01 HLA-B*08:01 B2M MHCI FLRGRAYGL EBNA3A EBV PMID:34811538 tetramer-sort yes amplicon-seq effector memory T cells healthy healthy_8 chip0516_792947 PBMC +13012 CSVEIGGYNEQFF TRBV29-1*01 TRBJ2-1*01 HLA-A*02:01 B2M MHCI SLISGMWLL VP2 RotavirusA PMID:34811538 tetramer-sort yes amplicon-seq transitional T cells between effector and memory populations healthy healthy_6 chip0516_559325 PBMC +13013 CASSFQTMNTEAFF TRBV27*01 TRBJ1-1*01 HLA-B*08:01 B2M MHCI YLKTNLFL G6PC2 HomoSapiens PMID:34811538 tetramer-sort yes amplicon-seq Naive T cells healthy healthy_8 chip0516_834261 PBMC +13014 CASSGDGMNTEAFF TRBV10-2*01 TRBJ1-1*01 HLA-A*02:01 B2M MHCI CLGGLLTMV LMP2A EBV PMID:34811538 tetramer-sort yes amplicon-seq effector memory T cells healthy healthy_6 chip0516_515733 PBMC +13015 CAGVGSGGSNYKLTF TRAV27*01 TRAJ53*01 CASSFQTGEITEAFF TRBV7-6*01 TRBJ1-1*01 HLA-B*08:01 B2M MHCI RAKFKQLL BZLF1 EBV PMID:34811538 tetramer-sort yes amplicon-seq transitional T cells between effector and memory populations healthy healthy_8 chip0516_509546 PBMC +13017 CAVRNDMRF TRAV12-2*01 TRAJ43*01 CASSLNGLDGTGELFF TRBV11-2*01 TRBJ2-2*01 HLA-A*02:01 B2M MHCI ELAGIGILTV MART1 HomoSapiens PMID:34811538 tetramer-sort yes amplicon-seq Naive T cells healthy healthy_7 chip0516_31933 PBMC +13018 CAVSDQKASGTYKYIF TRAV8-4*01 TRAJ40*01 HLA-B*08:01 B2M MHCI FQQDKHYDL GAD2 HomoSapiens PMID:34811538 tetramer-sort yes amplicon-seq Naive T cells healthy healthy_8 chip0516_437534 PBMC +13019 CAVTLTLYSGAGSYQLTF TRAV21*01 TRAJ28*01 CASSLMGTGGLSEKLFF TRBV28*01 TRBJ1-4*01 HLA-B*08:01 B2M MHCI QAKWRLQTL EBNA3A EBV PMID:34811538 tetramer-sort yes amplicon-seq transitional T cells between effector and memory populations healthy healthy_8 chip0516_133259 PBMC +13020 CASSSGQGDNEQFF TRBV11-3*01 TRBJ2-1*01 HLA-A*02:01 B2M MHCI GLCTLVAML BLMF1 EBV PMID:34811538 tetramer-sort yes amplicon-seq effector memory T cells healthy healthy_6 chip0516_813735 PBMC +13021 CAMSISNFGNEKLTF TRAV12-3*01 TRAJ48*01 HLA-A*02:01 B2M MHCI LLAGIGTVPI PGT HomoSapiens PMID:34811538 tetramer-sort yes amplicon-seq Naive T cells healthy healthy_7 chip0516_469709 PBMC +13025 CAAGSSGGYNKLIF TRAV13-1*01 TRAJ4*01 CSVEGFVTGGYEQYF TRBV29-1*01 TRBJ2-7*01 HLA-B*08:01 B2M MHCI YAKWKLCSA ZNT8 HomoSapiens PMID:34811538 tetramer-sort yes amplicon-seq Naive T cells healthy healthy_8 chip0516_465306 PBMC +13026 CASSSRWGDEKLFF TRBV5-1*01 TRBJ1-4*01 HLA-B*08:01 B2M MHCI LRLRLDQL GFAP HomoSapiens PMID:34811538 tetramer-sort yes amplicon-seq Naive T cells healthy healthy_8 chip0516_9145 PBMC +13027 CAVILDTGRRALTF TRAV12-2*01 TRAJ5*01 CASGLNTEAFF TRBV2*01 TRBJ1-1*01 HLA-A*02:01 B2M MHCI KMYAFTLES ZNT8 HomoSapiens PMID:34811538 tetramer-sort yes amplicon-seq Naive T cells healthy healthy_7 chip0516_696009 PBMC +13028 CILPLAGGTSYGKLTF TRAV26-2*01 TRAJ52*01 CASSLGQAYEQYF TRBV7-8*01 TRBJ2-7*01 HLA-B*08:01 B2M MHCI FLRGRAYGL EBNA3A EBV PMID:34811538 tetramer-sort yes amplicon-seq effector memory T cells healthy healthy_8 chip0516_89982 PBMC +13029 CASSSGQAYEQYF TRBV7-8*01 TRBJ2-7*01 HLA-B*08:01 B2M MHCI FLRGRAYGL EBNA3A EBV PMID:34811538 tetramer-sort yes amplicon-seq effector T cells healthy healthy_8 chip0516_585014 PBMC +13030 CGADYAGTASKLTF TRAV34*01 TRAJ44*01 HLA-B*08:01 B2M MHCI YLKTNLFL G6PC2 HomoSapiens PMID:34811538 tetramer-sort yes amplicon-seq transitional T cells between effector and memory populations healthy healthy_8 chip0516_119198 PBMC +13031 CALSEGcc??ggHARLMF TRAV19*01 TRAJ31*01 HLA-A*02:01 B2M MHCI YVLDHLIVV BRLF1 EBV PMID:34811538 tetramer-sort yes amplicon-seq transitional T cells between effector and memory populations healthy healthy_6 chip0516_607760 PBMC +13032 CAVKTDTNAGKSTF TRAV12-2*01 TRAJ27*01 HLA-B*08:01 B2M MHCI FLRGRAYGL EBNA3A EBV PMID:34811538 tetramer-sort yes amplicon-seq effector memory T cells healthy healthy_8 chip0516_39690 PBMC +13033 CAVSEGSSGDKLTF TRAV8-6*01 TRAJ46*01 HLA-B*08:01 B2M MHCI RAKFKQLL BZLF1 EBV PMID:34811538 tetramer-sort yes amplicon-seq effector memory T cells healthy healthy_8 chip0516_455466 PBMC +13034 CALYNQGGKLIF TRAV8-3*01 TRAJ23*01 HLA-B*08:01 B2M MHCI CPRERPEEL ZNT8 HomoSapiens PMID:34811538 tetramer-sort yes amplicon-seq Naive T cells healthy healthy_8 chip0516_22478 PBMC +13035 CASTMYGLGNTGELFF TRBV19*01 TRBJ2-2*01 HLA-A*02:01 B2M MHCI LLAGIGTVPI PGT HomoSapiens PMID:34811538 tetramer-sort yes amplicon-seq Naive T cells healthy healthy_7 chip0516_52896 PBMC +13036 CASSFGTGDNTEAFF TRBV7-6*01 TRBJ1-1*01 HLA-B*08:01 B2M MHCI RAKFKQLL BZLF1 EBV PMID:34811538 tetramer-sort yes amplicon-seq effector memory T cells healthy healthy_8 chip0516_48654 PBMC +13037 CILPLAGGTSYGKLTF TRAV26-2*01 TRAJ52*01 CASSLGQAYEQYF TRBV7-8*01 TRBJ2-7*01 HLA-B*08:01 B2M MHCI FLRGRAYGL EBNA3A EBV PMID:34811538 tetramer-sort yes amplicon-seq effector memory T cells healthy healthy_8 chip0516_468028 PBMC +13038 CAVKGDTNAGKSTF TRAV12-2*01 TRAJ27*01 HLA-B*08:01 B2M MHCI FLRGRAYGL EBNA3A EBV PMID:34811538 tetramer-sort yes amplicon-seq transitional T cells between effector and memory populations healthy healthy_8 chip0516_554984 PBMC +13039 CAMSQSNFGNEKLTF TRAV12-3*01 TRAJ48*01 CASSQDATERQETQYF TRBV3-1*01 TRBJ2-5*01 HLA-A*02:01 B2M MHCI LLAGIGTVPI PGT HomoSapiens PMID:34811538 tetramer-sort yes amplicon-seq Naive T cells healthy healthy_6 chip0516_42192 PBMC +13040 CAVPPMDSSYKLIF TRAV1-1*01 TRAJ12*01 CASRRLAEGGQEQFF TRBV28*01 TRBJ2-1*01 HLA-A*02:01 B2M MHCI YVLDHLIVV BRLF1 EBV PMID:34811538 tetramer-sort yes amplicon-seq central memory T cells healthy healthy_7 chip0516_232193 PBMC +13041 CASSVGGISPLHF TRBV9*01 TRBJ1-6*01 HLA-A*02:01 B2M MHCI YLLEMLWRL LMP1 EBV PMID:34811538 tetramer-sort yes amplicon-seq central memory T cells healthy healthy_6 chip0516_650480 PBMC +13042 CASSGGREQFF TRBV4-2*01 TRBJ2-1*01 HLA-B*08:01 B2M MHCI ELRSRYWAI NP InfluenzaA PMID:34811538 tetramer-sort yes amplicon-seq Naive T cells healthy healthy_9 chip0516_523956 PBMC +13043 CILPLAGGTSYGKLTF TRAV26-2*01 TRAJ52*01 CASSLGQAYEQYF TRBV7-8*01 TRBJ2-7*01 HLA-B*08:01 B2M MHCI FLRGRAYGL EBNA3A EBV PMID:34811538 tetramer-sort yes amplicon-seq effector memory T cells healthy healthy_8 chip0516_814578 PBMC +13044 CALLTc?cDKLIF TRAV9-2*01 TRAJ34*01 CASSFGVGEGTEAFF TRBV7-2*01 TRBJ1-1*01 HLA-B*08:01 B2M MHCI RAKFKQLL BZLF1 EBV PMID:34811538 tetramer-sort yes amplicon-seq effector memory T cells healthy healthy_8 chip0516_860080 PBMC +13045 CASSGDGMNTEAFF TRBV10-2*01 TRBJ1-1*01 HLA-A*02:01 B2M MHCI CLGGLLTMV LMP2A EBV PMID:34811538 tetramer-sort yes amplicon-seq effector memory T cells healthy healthy_6 chip0516_686868 PBMC +13046 CILPLAGGTSYGKLTF TRAV26-2*01 TRAJ52*01 CASSLGQAYEQYF TRBV7-8*01 TRBJ2-7*01 HLA-B*08:01 B2M MHCI FLRGRAYGL EBNA3A EBV PMID:34811538 tetramer-sort yes amplicon-seq effector memory T cells healthy healthy_8 chip0516_33153 PBMC +13047 CILPLAGGTRYGKLTF TRAV26-2*01 TRAJ52*01 CASSLGQAYEQYF TRBV7-8*01 TRBJ2-7*01 HLA-B*08:01 B2M MHCI FLRGRAYGL EBNA3A EBV PMID:34811538 tetramer-sort yes amplicon-seq central memory T cells healthy healthy_8 chip0516_882778 PBMC +13048 CILPLAGGTSYGKLTF TRAV26-2*01 TRAJ52*01 CASSLGQAYEQYF TRBV7-8*01 TRBJ2-7*01 HLA-B*08:01 B2M MHCI FLRGRAYGL EBNA3A EBV PMID:34811538 tetramer-sort yes amplicon-seq effector memory T cells healthy healthy_8 chip0516_300450 PBMC +13049 CASSLGQAYEQYF TRBV7-8*01 TRBJ2-7*01 HLA-B*08:01 B2M MHCI FLRGRAYGL EBNA3A EBV PMID:34811538 tetramer-sort yes amplicon-seq effector memory T cells healthy healthy_8 chip0516_658733 PBMC +13050 CAMRVIKQLTF TRAV14/DV4*01 TRAJ22*01 HLA-B*08:01 B2M MHCI RAKFKQLL BZLF1 EBV PMID:34811538 tetramer-sort yes amplicon-seq effector T cells healthy healthy_10 chip0516_604332 PBMC +13051 CASSHPSGQGLYSNQPQHF TRBV19*01 TRBJ1-5*01 HLA-A*01:01 B2M MHCI CTELKLSDY NP InfluenzaA PMID:34811538 tetramer-sort yes amplicon-seq transitional T cells between effector and memory populations healthy healthy_10 chip0516_544402 PBMC +13052 CAVStg??ccKIIF TRAV8-1*01 TRAJ30*01 CASSSGQGDNEQFF TRBV11-3*01 TRBJ2-1*01 HLA-A*02:01 B2M MHCI GLCTLVAML BLMF1 EBV PMID:34811538 tetramer-sort yes amplicon-seq transitional T cells between effector and memory populations healthy healthy_6 chip0516_210826 PBMC +13054 CASSQSLta??gtCTDTQYF TRBV4-3*01 TRBJ2-3*01 HLA-A*02:01 B2M MHCI ALAGIGILTV MART1 HomoSapiens PMID:34811538 tetramer-sort yes amplicon-seq Naive T cells healthy healthy_7 chip0516_455958 PBMC +13055 CAVKTDTNAGQSTF TRAV12-2*01 TRAJ27*01 CASSDSIGFNSPLHF TRBV6-4*01 TRBJ1-6*01 HLA-B*08:01 B2M MHCI FLRGRAYGL EBNA3A EBV PMID:34811538 tetramer-sort yes amplicon-seq transitional T cells between effector and memory populations healthy healthy_8 chip0516_305608 PBMC +13056 CILPLAGGTSYGKLTF TRAV26-2*01 TRAJ52*01 CASSSGQAYEQYF TRBV7-8*01 TRBJ2-7*01 HLA-B*08:01 B2M MHCI FLRGRAYGL EBNA3A EBV PMID:34811538 tetramer-sort yes amplicon-seq effector T cells healthy healthy_8 chip0516_404390 PBMC +13058 CAVALSSKSTF TRAV8-3*01 TRAJ27*01 CASSGDGMNTEAFF TRBV10-2*01 TRBJ1-1*01 HLA-A*02:01 B2M MHCI CLGGLLTMV LMP2A EBV PMID:34811538 tetramer-sort yes amplicon-seq effector memory T cells healthy healthy_6 chip0516_709298 PBMC +13060 CASSGQGGHYGYTF TRBV6-1*01 TRBJ1-2*01 HLA-A*02:01 B2M MHCI FLYALALLL LMP2 EBV PMID:34811538 tetramer-sort yes amplicon-seq central memory T cells healthy healthy_7 chip0516_818676 PBMC +13061 CSVEGASac?TNAGKSTF TRAV2*01 TRAJ27*01 HLA-A*02:01 B2M MHCI GLCTLVAML BLMF1 EBV PMID:34811538 tetramer-sort yes amplicon-seq effector T cells healthy healthy_7 chip0516_300096 PBMC +13062 CASRGTLDVGTPEQYF TRBV13*01 TRBJ2-7*01 HLA-B*08:01 B2M MHCI MMIARFKM GAD2 HomoSapiens PMID:34811538 tetramer-sort yes amplicon-seq Naive T cells healthy healthy_8 chip0516_202181 PBMC +13063 CILPLAGGTSYGKLTF TRAV26-2*01 TRAJ52*01 HLA-B*08:01 B2M MHCI FLRGRAYGL EBNA3A EBV PMID:34811538 tetramer-sort yes amplicon-seq transitional T cells between effector and memory populations healthy healthy_8 chip0516_158682 PBMC +13064 CASSLGQAYEQYF TRBV7-8*01 TRBJ2-7*01 HLA-B*08:01 B2M MHCI FLRGRAYGL EBNA3A EBV PMID:34811538 tetramer-sort yes amplicon-seq central memory T cells healthy healthy_8 chip0516_854155 PBMC +13065 CVVLQga?YSTLTF TRAV8-2*01 TRAJ11*01 HLA-A*01:01 B2M MHCI CTELKLSDY NP InfluenzaA PMID:34811538 tetramer-sort yes amplicon-seq transitional T cells between effector and memory populations healthy healthy_8 chip0516_594421 PBMC +13066 CALRVPYLa?cFGHVALTF TRAV9-2*01 TRAJ48*01 CASSGTYEETQYF TRBV7-9*01 TRBJ2-5*01 HLA-A*01:01 B2M MHCI CTELKLSDY NP InfluenzaA PMID:34811538 tetramer-sort yes amplicon-seq Naive T cells healthy healthy_8 chip0516_721365 PBMC +13067 CASSGDGMNTEAFF TRBV10-2*01 TRBJ1-1*01 HLA-A*02:01 B2M MHCI CLGGLLTMV LMP2A EBV PMID:34811538 tetramer-sort yes amplicon-seq effector memory T cells healthy healthy_6 chip0516_354381 PBMC +13068 CASSLGQAYEQYF TRBV7-8*01 TRBJ2-7*01 HLA-B*08:01 B2M MHCI FLRGRAYGL EBNA3A EBV PMID:34811538 tetramer-sort yes amplicon-seq effector memory T cells healthy healthy_8 chip0516_360984 PBMC +13069 CAVNAGtg??caGNMLTF TRAV8-1*01 TRAJ39*01 HLA-B*08:01 B2M MHCI QAKWRLQTL EBNA3A EBV PMID:34811538 tetramer-sort yes amplicon-seq Naive T cells healthy healthy_9 chip0516_40516 PBMC +13071 CALSEVSGNTPLVF TRAV19*01 TRAJ29*01 HLA-B*08:01 B2M MHCI MMIARFKM GAD2 HomoSapiens PMID:34811538 tetramer-sort yes amplicon-seq Naive T cells healthy healthy_9 chip0516_864688 PBMC +13074 RGVDAVat??aaGYALHF TRAV8-3*01 TRAJ41*01 HLA-B*08:01 B2M MHCI QAKWRLQTL EBNA3A EBV PMID:34811538 tetramer-sort yes amplicon-seq transitional T cells between effector and memory populations healthy healthy_8 chip0516_699911 PBMC +13075 CAILAPGNTIYF TRBV10-3*01 TRBJ1-3*01 HLA-B*08:01 B2M MHCI YAKWKLCSA ZNT8 HomoSapiens PMID:34811538 tetramer-sort yes amplicon-seq Naive T cells healthy healthy_8 chip0516_663376 PBMC +13078 CAMRRITSGTYKYIF TRAV14/DV4*01 TRAJ40*01 CASSAASPDRGSRSSYNEQFF TRBV11-1*01 TRBJ2-1*01 HLA-B*08:01 B2M MHCI ELRSRYWAI NP InfluenzaA PMID:34811538 tetramer-sort yes amplicon-seq transitional T cells between effector and memory populations healthy healthy_8 chip0516_520929 PBMC +13079 CILPLAGGTSYGKLTF TRAV26-2*01 TRAJ52*01 CASSLGQAYEQYF TRBV7-8*01 TRBJ2-7*01 HLA-B*08:01 B2M MHCI FLRGRAYGL EBNA3A EBV PMID:34811538 tetramer-sort yes amplicon-seq effector memory T cells healthy healthy_8 chip0516_32477 PBMC +13080 CAMSRANFGNEKLTF TRAV12-3*01 TRAJ48*01 HLA-A*02:01 B2M MHCI LLAGIGTVPI PGT HomoSapiens PMID:34811538 tetramer-sort yes amplicon-seq Naive T cells healthy healthy_7 chip0516_342239 PBMC +13082 CTMNVADSNYKLIF TRAV14/DV4*01 TRAJ12*01 HLA-A*02:01 B2M MHCI GILGFVFTL M1 InfluenzaA PMID:34811538 tetramer-sort yes amplicon-seq central memory T cells healthy healthy_7 chip0516_205363 PBMC +13084 CASSLMGTGGLSEKLFF TRBV28*01 TRBJ1-4*01 HLA-B*08:01 B2M MHCI QAKWRLQTL EBNA3A EBV PMID:34811538 tetramer-sort yes amplicon-seq central memory T cells healthy healthy_8 chip0516_286858 PBMC +13085 CASSTSRGSGNTIYF TRBV4-1*01 TRBJ1-3*01 HLA-B*08:01 B2M MHCI RAKFKQLL BZLF1 EBV PMID:34811538 tetramer-sort yes amplicon-seq effector T cells healthy healthy_10 chip0516_546571 PBMC +13086 CASSLGQAYEQYF TRBV7-8*01 TRBJ2-7*01 HLA-B*08:01 B2M MHCI FLRGRAYGL EBNA3A EBV PMID:34811538 tetramer-sort yes amplicon-seq effector T cells healthy healthy_8 chip0516_836904 PBMC +13087 CASSGDGMNTEAFF TRBV10-2*01 TRBJ1-1*01 HLA-A*02:01 B2M MHCI CLGGLLTMV LMP2A EBV PMID:34811538 tetramer-sort yes amplicon-seq effector memory T cells healthy healthy_6 chip0516_218951 PBMC +13088 CAVNGGERSGGSNYKLTF TRAV12-2*01 TRAJ53*01 CASSVGGISPLHF TRBV9*01 TRBJ1-6*01 HLA-A*02:01 B2M MHCI YLLEMLWRL LMP1 EBV PMID:34811538 tetramer-sort yes amplicon-seq central memory T cells healthy healthy_6 chip0516_884488 PBMC +13089 CAGARCGRSHYKLTF TRAV27*01 TRAJ53*01 CASSFQTGEITEAFF TRBV7-6*01 TRBJ1-1*01 HLA-B*08:01 B2M MHCI RAKFKQLL BZLF1 EBV PMID:34811538 tetramer-sort yes amplicon-seq effector T cells healthy healthy_8 chip0516_56072 PBMC +13091 CAVALSSKSTF TRAV8-3*01 TRAJ27*01 CASSGDGMNTEAFF TRBV10-2*01 TRBJ1-1*01 HLA-A*02:01 B2M MHCI CLGGLLTMV LMP2A EBV PMID:34811538 tetramer-sort yes amplicon-seq effector memory T cells healthy healthy_6 chip0516_219852 PBMC +13093 CAVALSSKSTF TRAV8-3*01 TRAJ27*01 HLA-A*02:01 B2M MHCI CLGGLLTMV LMP2A EBV PMID:34811538 tetramer-sort yes amplicon-seq central memory T cells healthy healthy_6 chip0516_588337 PBMC +13094 CASSDFGTENIQYF TRBV2*01 TRBJ2-4*01 HLA-A*02:01 B2M MHCI LLAGIGTVPI PGT HomoSapiens PMID:34811538 tetramer-sort yes amplicon-seq Naive T cells healthy healthy_7 chip0516_794610 PBMC +13095 CSVGSGGTNEKLFF TRBV29-1*01 TRBJ1-4*01 HLA-A*02:01 B2M MHCI GLCTLVAML BLMF1 EBV PMID:34811538 tetramer-sort yes amplicon-seq effector memory T cells healthy healthy_6 chip0516_476765 PBMC +13096 CAGTFAGSARQLTF TRAV27*01 TRAJ22*01 CASSSPWGTEAFF TRBV7-9*01 TRBJ1-1*01 HLA-B*08:01 B2M MHCI YAYAKWKL ZNT8 HomoSapiens PMID:34811538 tetramer-sort yes amplicon-seq Naive T cells healthy healthy_8 chip0516_181496 PBMC +13097 CATEGNSGYSTLTF TRAV17*01 TRAJ11*01 HLA-A*02:01 B2M MHCI FLYALALLL LMP2 EBV PMID:34811538 tetramer-sort yes amplicon-seq effector memory T cells healthy healthy_6 chip0516_824190 PBMC +13098 CASSYSSQGRYEQYF TRBV6-5*01 TRBJ2-7*01 HLA-B*08:01 B2M MHCI AAKMYAFTL ZNT8 HomoSapiens PMID:34811538 tetramer-sort yes amplicon-seq Naive T cells healthy healthy_8 chip0516_719637 PBMC +13099 CASSSTFPNTGELFF TRBV3-1*01 TRBJ2-2*01 HLA-B*08:01 B2M MHCI RAKFKQLL BZLF1 EBV PMID:34811538 tetramer-sort yes amplicon-seq effector memory T cells healthy healthy_8 chip0516_767269 PBMC +13100 CAISESNTQYF TRBV10-3*01 TRBJ2-3*01 HLA-B*08:01 B2M MHCI RAKFKQLL BZLF1 EBV PMID:34811538 tetramer-sort yes amplicon-seq effector T cells healthy healthy_9 chip0516_606076 PBMC +13101 CAVALSSKSTF TRAV8-3*01 TRAJ27*01 HLA-A*02:01 B2M MHCI CLGGLLTMV LMP2A EBV PMID:34811538 tetramer-sort yes amplicon-seq effector memory T cells healthy healthy_6 chip0516_177994 PBMC +13102 CAMRVFHQGAQKLVF TRAV14/DV4*01 TRAJ54*01 CASSFVQQGYQPQHF TRBV12-3*01,TRBV12-4*01 TRBJ1-5*01 HLA-A*02:01 B2M MHCI GIIYIIYKL P3A CoxsackievirusB PMID:34811538 tetramer-sort yes amplicon-seq Naive T cells healthy healthy_7 chip0516_233815 PBMC +13103 CASSYQGGSYGYTF TRBV6-5*01 TRBJ1-2*01 HLA-A*02:01 B2M MHCI FLYALALLL LMP2 EBV PMID:34811538 tetramer-sort yes amplicon-seq effector memory T cells healthy healthy_7 chip0516_13435 PBMC +13105 CAMSAAGANSKLTF TRAV12-3*01 TRAJ56*01 CASSPPYNEQFF TRBV7-8*01 TRBJ2-1*01 HLA-A*02:01 B2M MHCI LLSLFSLWL ZNT8 HomoSapiens PMID:34811538 tetramer-sort yes amplicon-seq transitional T cells between effector and memory populations healthy healthy_6 chip0516_262893 PBMC +13106 CAVALSSKSTF TRAV8-3*01 TRAJ27*01 CASSEDGMNTEAFF TRBV10-2*01 TRBJ1-1*01 HLA-A*02:01 B2M MHCI CLGGLLTMV LMP2A EBV PMID:34811538 tetramer-sort yes amplicon-seq effector memory T cells healthy healthy_6 chip0516_118829 PBMC +13107 CASSGDGMNTEAFF TRBV10-2*01 TRBJ1-1*01 HLA-A*02:01 B2M MHCI CLGGLLTMV LMP2A EBV PMID:34811538 tetramer-sort yes amplicon-seq effector memory T cells healthy healthy_6 chip0516_102768 PBMC +13108 CAMMDNFNKFYF TRAV12-3*01 TRAJ21*01 CASSSTGIRTEAFF TRBV19*01 TRBJ1-1*01 HLA-A*01:01 B2M MHCI CTELKLSDY NP InfluenzaA PMID:34811538 tetramer-sort yes amplicon-seq Naive T cells healthy healthy_8 chip0516_752013 PBMC +13111 CASSGDGMNTEAFF TRBV10-2*01 TRBJ1-1*01 HLA-A*02:01 B2M MHCI CLGGLLTMV LMP2A EBV PMID:34811538 tetramer-sort yes amplicon-seq effector memory T cells healthy healthy_6 chip0516_339708 PBMC +13113 CASSSGQAYKQYF TRBV7-8*01 TRBJ2-7*01 HLA-B*08:01 B2M MHCI FLRGRAYGL EBNA3A EBV PMID:34811538 tetramer-sort yes amplicon-seq central memory T cells healthy healthy_8 chip0516_17783 PBMC +13114 CIVIFEGAGNMLTF TRAV26-1*01 TRAJ39*01 HLA-B*08:01 B2M MHCI RAKFKQLL BZLF1 EBV PMID:34811538 tetramer-sort yes amplicon-seq effector memory T cells healthy healthy_8 chip0516_884129 PBMC +13115 CAGEGGGSQGNLIF TRAV27*01 TRAJ42*01 CASSIRSSYEQYF TRBV19*01 TRBJ2-7*01 HLA-A*02:01 B2M MHCI GILGFVFTL M1 InfluenzaA PMID:34811538 tetramer-sort yes amplicon-seq transitional T cells between effector and memory populations healthy healthy_7 chip0516_826158 PBMC +13117 CILPLAGGTSYGKLTF TRAV26-2*01 TRAJ52*01 CASSSGQAYEQYF TRBV7-8*01 TRBJ2-7*01 HLA-B*08:01 B2M MHCI FLRGRAYGL EBNA3A EBV PMID:34811538 tetramer-sort yes amplicon-seq effector memory T cells healthy healthy_8 chip0516_462991 PBMC +13118 CALSGLYNNNDMRF TRAV9-2*01 TRAJ43*01 CASSYSSSQPQHF TRBV6-5*01 TRBJ1-5*01 HLA-A*02:01 B2M MHCI CLGGLLTMV LMP2A EBV PMID:34811538 tetramer-sort yes amplicon-seq Naive T cells healthy healthy_7 chip0516_291696 PBMC +13120 CVVNNNDMRF TRAV12-1*01 TRAJ43*01 HLA-A*01:01 B2M MHCI VSATAGTTVY GAD2 HomoSapiens PMID:34811538 tetramer-sort yes amplicon-seq Naive T cells healthy healthy_8 chip0516_451306 PBMC +13121 CASSGDGMNTEAFF TRBV10-2*01 TRBJ1-1*01 HLA-A*02:01 B2M MHCI CLGGLLTMV LMP2A EBV PMID:34811538 tetramer-sort yes amplicon-seq effector memory T cells healthy healthy_6 chip0516_3406 PBMC +13122 CAVTLTLYSGAGSYQLTF TRAV21*01 TRAJ28*01 CASSLMGTGGLSEKLFF TRBV28*01 TRBJ1-4*01 HLA-B*08:01 B2M MHCI QAKWRLQTL EBNA3A EBV PMID:34811538 tetramer-sort yes amplicon-seq central memory T cells healthy healthy_8 chip0516_268609 PBMC +13123 CASSLLATDTQYF TRBV7-3*01 TRBJ2-3*01 HLA-B*08:01 B2M MHCI RAKFKQLL BZLF1 EBV PMID:34811538 tetramer-sort yes amplicon-seq effector memory T cells healthy healthy_8 chip0516_688494 PBMC +13124 CILPLAGGTSYGKLTF TRAV26-2*01 TRAJ52*01 CASSLGQAYEQYF TRBV7-8*01 TRBJ2-7*01 HLA-B*08:01 B2M MHCI FLRGRAYGL EBNA3A EBV PMID:34811538 tetramer-sort yes amplicon-seq effector memory T cells healthy healthy_8 chip0516_592815 PBMC +13125 CASSQDGVPGGNEQYF TRBV4-1*01 TRBJ2-7*01 HLA-A*01:01 B2M MHCI CTELKLSDY NP InfluenzaA PMID:34811538 tetramer-sort yes amplicon-seq transitional T cells between effector and memory populations healthy healthy_8 chip0516_445390 PBMC +13126 CAASLGGYSTLTF TRAV13-1*01 TRAJ11*01 CSVEDWLAGSYEQYF TRBV29-1*01 TRBJ2-7*01 HLA-B*08:01 B2M MHCI YAKWKLCSA ZNT8 HomoSapiens PMID:34811538 tetramer-sort yes amplicon-seq Naive T cells healthy healthy_9 chip0516_253007 PBMC +13127 CALPPVSDGQKLLF TRAV9-2*01 TRAJ16*01 CSARDTTYEQYF TRBV20-1*01 TRBJ2-7*01 HLA-B*08:01 B2M MHCI SRKHKWKL GAD2 HomoSapiens PMID:34811538 tetramer-sort yes amplicon-seq effector memory T cells healthy healthy_8 chip0516_225269 PBMC +13130 CAVALSSKSTF TRAV8-3*01 TRAJ27*01 CASSGDGMNTEAFF TRBV10-2*01 TRBJ1-1*01 HLA-A*02:01 B2M MHCI CLGGLLTMV LMP2A EBV PMID:34811538 tetramer-sort yes amplicon-seq effector memory T cells healthy healthy_6 chip0516_100524 PBMC +13131 CLVGGSSNSGGYQKVTF TRAV4*01 TRAJ13*01 HLA-B*08:01 B2M MHCI QAKWRLQTL EBNA3A EBV PMID:34811538 tetramer-sort yes amplicon-seq effector memory T cells healthy healthy_8 chip0516_526300 PBMC +13132 CILPLAGGTSYGKLTF TRAV26-2*01 TRAJ52*01 CASSLGQAYEQYF TRBV7-8*01 TRBJ2-7*01 HLA-B*08:01 B2M MHCI FLRGRAYGL EBNA3A EBV PMID:34811538 tetramer-sort yes amplicon-seq transitional T cells between effector and memory populations healthy healthy_8 chip0516_670095 PBMC +13133 CASSIRNTGELFF TRBV19*01 TRBJ2-2*01 HLA-A*02:01 B2M MHCI GILGFVFTL M1 InfluenzaA PMID:34811538 tetramer-sort yes amplicon-seq transitional T cells between effector and memory populations healthy healthy_7 chip0516_634414 PBMC +13134 CILPLAGGTRYVMLTF TRAV26-2*01 TRAJ52*01 CASSSGQAYEQYF TRBV7-8*01 TRBJ2-7*01 HLA-B*08:01 B2M MHCI FLRGRAYGL EBNA3A EBV PMID:34811538 tetramer-sort yes amplicon-seq effector T cells healthy healthy_8 chip0516_163783 PBMC +13135 CILPLAGGTSYGKLTF TRAV26-2*01 TRAJ52*01 CASSLGQAYEQYF TRBV7-8*01 TRBJ2-7*01 HLA-B*08:01 B2M MHCI FLRGRAYGL EBNA3A EBV PMID:34811538 tetramer-sort yes amplicon-seq effector memory T cells healthy healthy_8 chip0516_775858 PBMC +13136 RAVALYGNKLVF TRAV8-3*01 TRAJ47*01 CASSLGQPYEQYF TRBV5-5*01 TRBJ2-7*01 HLA-B*08:01 B2M MHCI YAKWKLCSA ZNT8 HomoSapiens PMID:34811538 tetramer-sort yes amplicon-seq Naive T cells healthy healthy_9 chip0516_40143 PBMC +13137 CASSLTVGGEAFF TRBV7-3*01 TRBJ1-1*01 HLA-A*02:01 B2M MHCI LLSLFSLWL ZNT8 HomoSapiens PMID:34811538 tetramer-sort yes amplicon-seq Naive T cells healthy healthy_7 chip0516_26287 PBMC +13138 CILPLADGTSYGKLTF TRAV26-2*01 TRAJ52*01 CASSLGQAYEQYF TRBV7-8*01 TRBJ2-7*01 HLA-B*08:01 B2M MHCI FLRGRAYGL EBNA3A EBV PMID:34811538 tetramer-sort yes amplicon-seq effector T cells healthy healthy_8 chip0516_709878 PBMC +13139 CAASI*ALat??agDSNYQLIW TRAV13-1*01 TRAJ33*01 HLA-A*02:01 B2M MHCI LLAGIGTVPI PGT HomoSapiens PMID:34811538 tetramer-sort yes amplicon-seq Naive T cells healthy healthy_7 chip0516_693283 PBMC +13140 CASSPERRYEQYV TRBV6-2*01,TRBV6-3*01 TRBJ2-7*01 HLA-B*08:01 B2M MHCI RMMEYGTTM GAD2 HomoSapiens PMID:34811538 tetramer-sort yes amplicon-seq Naive T cells healthy healthy_8 chip0516_89304 PBMC +13141 CADLGCGRMLVF TRAV13-2*01 TRAJ47*01 CSGGPDNYGYTF TRBV29-1*01 TRBJ1-2*01 HLA-B*08:01 B2M MHCI YLKTNLFL G6PC2 HomoSapiens PMID:34811538 tetramer-sort yes amplicon-seq Naive T cells healthy healthy_9 chip0516_47933 PBMC +13142 CASSSGQAYEQYF TRBV7-8*01 TRBJ2-7*01 HLA-B*08:01 B2M MHCI FLRGRAYGL EBNA3A EBV PMID:34811538 tetramer-sort yes amplicon-seq central memory T cells healthy healthy_8 chip0516_747460 PBMC +13143 CASSSGQAYEQYF TRBV7-8*01 TRBJ2-7*01 HLA-B*08:01 B2M MHCI FLRGRAYGL EBNA3A EBV PMID:34811538 tetramer-sort yes amplicon-seq effector T cells healthy healthy_8 chip0516_82242 PBMC +13144 CILAVGGGASYGKLTF TRAV26-2*01 TRAJ52*01 HLA-B*08:01 B2M MHCI FLRGRAYGL EBNA3A EBV PMID:34811538 tetramer-sort yes amplicon-seq effector memory T cells healthy healthy_8 chip0516_165760 PBMC +13146 CAVGEDRLMF TRAV8-3*01 TRAJ31*01 CASSPSNGAGGYTF TRBV4-1*01 TRBJ1-2*01 HLA-B*08:01 B2M MHCI RAKFKQLL BZLF1 EBV PMID:34811538 tetramer-sort yes amplicon-seq effector T cells healthy healthy_9 chip0516_571029 PBMC +13147 CAVALSSKSTF TRAV8-3*01 TRAJ27*01 HLA-A*02:01 B2M MHCI CLGGLLTMV LMP2A EBV PMID:34811538 tetramer-sort yes amplicon-seq effector memory T cells healthy healthy_6 chip0516_209714 PBMC +13148 CASSYTAKTDTSNQPQHF TRBV6-2*01,TRBV6-3*01 TRBJ1-5*01 HLA-A*02:01 B2M MHCI GILGFVFTL M1 InfluenzaA PMID:34811538 tetramer-sort yes amplicon-seq transitional T cells between effector and memory populations healthy healthy_6 chip0516_83865 PBMC +13149 CILPLAGGTSYGKLTF TRAV26-2*01 TRAJ52*01 HLA-B*08:01 B2M MHCI FLRGRAYGL EBNA3A EBV PMID:34811538 tetramer-sort yes amplicon-seq effector T cells healthy healthy_8 chip0516_424905 PBMC +13150 CASSPFGEGRNTEAFF TRBV18*01 TRBJ1-1*01 HLA-A*02:01 B2M MHCI LLSLFSLWL ZNT8 HomoSapiens PMID:34811538 tetramer-sort yes amplicon-seq Naive T cells healthy healthy_7 chip0516_828368 PBMC +13151 CASSGDGMNTEAFF TRBV10-2*01 TRBJ1-1*01 HLA-A*02:01 B2M MHCI CLGGLLTMV LMP2A EBV PMID:34811538 tetramer-sort yes amplicon-seq effector memory T cells healthy healthy_6 chip0516_32313 PBMC +13152 CAVRVSRTGGFKTIF TRAV1-2*01 TRAJ9*01 HLA-B*08:01 B2M MHCI LRLRLDQL GFAP HomoSapiens PMID:34811538 tetramer-sort yes amplicon-seq Naive T cells healthy healthy_8 chip0516_433574 PBMC +13153 CAMRVYGGFQTIF TRAV12-3*01 TRAJ9*01 HLA-B*08:01 B2M MHCI HARIKLKV PTPRN HomoSapiens PMID:34811538 tetramer-sort yes amplicon-seq Naive T cells healthy healthy_8 chip0516_676476 PBMC +13154 CATEGASGYSTLTF TRAV17*01 TRAJ11*01 HLA-A*02:01 B2M MHCI FLYALALLL LMP2 EBV PMID:34811538 tetramer-sort yes amplicon-seq central memory T cells healthy healthy_6 chip0516_456990 PBMC +13155 CILPLAGGTRSGTLPF TRAV26-2*01 TRAJ52*01 HLA-B*08:01 B2M MHCI FLRGRAYGL EBNA3A EBV PMID:34811538 tetramer-sort yes amplicon-seq effector memory T cells healthy healthy_8 chip0516_79154 PBMC +13156 CAVSPNNAGNMLTF TRAV21*01 TRAJ39*01 HLA-B*08:01 B2M MHCI YAYAKWKL ZNT8 HomoSapiens PMID:34811538 tetramer-sort yes amplicon-seq Naive T cells healthy healthy_8 chip0516_316635 PBMC +13157 CILPLAGGTSYGKLTF TRAV26-2*01 TRAJ52*01 CASSLGQAYEQYF TRBV7-8*01 TRBJ2-7*01 HLA-B*08:01 B2M MHCI FLRGRAYGL EBNA3A EBV PMID:34811538 tetramer-sort yes amplicon-seq central memory T cells healthy healthy_8 chip0516_338762 PBMC +13158 CASSLGQAYEQYF TRBV7-8*01 TRBJ2-7*01 HLA-B*08:01 B2M MHCI FLRGRAYGL EBNA3A EBV PMID:34811538 tetramer-sort yes amplicon-seq effector memory T cells healthy healthy_8 chip0516_254694 PBMC +13159 CAATFYGGSQGNLIF TRAV29/DV5*01 TRAJ42*01 CASSTQTAPDDTQYF TRBV7-9*01 TRBJ2-3*01 HLA-B*08:01 B2M MHCI RAKFKQLL BZLF1 EBV PMID:34811538 tetramer-sort yes amplicon-seq effector memory T cells healthy healthy_8 chip0516_120577 PBMC +13160 CASSLVQRTGELFF TRBV7-8*01 TRBJ2-2*01 HLA-B*08:01 B2M MHCI CPLSKILL LMP2A EBV PMID:34811538 tetramer-sort yes amplicon-seq transitional T cells between effector and memory populations healthy healthy_9 chip0516_618480 PBMC +13162 CASSTQTAPDDTQYF TRBV7-9*01 TRBJ2-3*01 HLA-B*08:01 B2M MHCI RAKFKQLL BZLF1 EBV PMID:34811538 tetramer-sort yes amplicon-seq effector memory T cells healthy healthy_8 chip0516_461121 PBMC +13163 CILPLAGGTSYGKLTF TRAV26-2*01 TRAJ52*01 CASSLGQAYEQYF TRBV7-8*01 TRBJ2-7*01 HLA-B*08:01 B2M MHCI FLRGRAYGL EBNA3A EBV PMID:34811538 tetramer-sort yes amplicon-seq effector memory T cells healthy healthy_8 chip0516_118015 PBMC +13164 CASSLGGTNEQFF TRBV4-1*01 TRBJ2-1*01 HLA-B*08:01 B2M MHCI RAKFKQLL BZLF1 EBV PMID:34811538 tetramer-sort yes amplicon-seq transitional T cells between effector and memory populations healthy healthy_8 chip0516_8756 PBMC +13165 CILPLAGGTSYGKLTF TRAV26-2*01 TRAJ52*01 HLA-B*08:01 B2M MHCI FLRGRAYGL EBNA3A EBV PMID:34811538 tetramer-sort yes amplicon-seq transitional T cells between effector and memory populations healthy healthy_8 chip0516_337786 PBMC +13166 CAVKTDTNAGKSTF TRAV12-2*01 TRAJ27*01 HLA-B*08:01 B2M MHCI FLRGRAYGL EBNA3A EBV PMID:34811538 tetramer-sort yes amplicon-seq effector memory T cells healthy healthy_8 chip0516_203024 PBMC +13167 CAVIRIct?GGFKTIF TRAV8-1*01 TRAJ9*01 HLA-A*02:01 B2M MHCI FLYALALLL LMP2 EBV PMID:34811538 tetramer-sort yes amplicon-seq effector memory T cells healthy healthy_6 chip0516_702195 PBMC +13168 CAARLGAQKLVF TRAV29/DV5*01 TRAJ54*01 CASSPQASGGWNEQFF TRBV13*01 TRBJ2-1*01 HLA-A*01:01 B2M MHCI VTDAAHLLI ZNT8 HomoSapiens PMID:34811538 tetramer-sort yes amplicon-seq Naive T cells healthy healthy_8 chip0516_556491 PBMC +13169 CILPLAGGTSYGKLTF TRAV26-2*01 TRAJ52*01 CASSLGQAYEPYF TRBV7-8*01 TRBJ2-7*01 HLA-B*08:01 B2M MHCI FLRGRAYGL EBNA3A EBV PMID:34811538 tetramer-sort yes amplicon-seq central memory T cells healthy healthy_8 chip0516_359394 PBMC +13170 CASSQELAGNSYNEQFF TRBV3-1*01 TRBJ2-1*01 HLA-A*02:01 B2M MHCI LLAGIGTVPI PGT HomoSapiens PMID:34811538 tetramer-sort yes amplicon-seq Naive T cells healthy healthy_7 chip0516_55677 PBMC +13171 CAVNEGEGADGLTF TRAV12-2*01 TRAJ45*01 CASSSTAFAGNTIYF TRBV6-5*01 TRBJ1-3*01 HLA-A*02:01 B2M MHCI ALAGIGILTV MART1 HomoSapiens PMID:34811538 tetramer-sort yes amplicon-seq Naive T cells healthy healthy_6 chip0516_815677 PBMC +13172 CASSPSPGTGAGEKLFF TRBV4-3*01 TRBJ1-4*01 HLA-A*02:01 B2M MHCI SLISGMWLL VP2 RotavirusA PMID:34811538 tetramer-sort yes amplicon-seq Naive T cells healthy healthy_7 chip0516_678019 PBMC +13175 CASSGDGMNTEAFF TRBV10-2*01 TRBJ1-1*01 HLA-A*02:01 B2M MHCI CLGGLLTMV LMP2A EBV PMID:34811538 tetramer-sort yes amplicon-seq effector memory T cells healthy healthy_6 chip0516_167398 PBMC +13176 CASSGDGMNTEAFF TRBV10-2*01 TRBJ1-1*01 HLA-A*02:01 B2M MHCI CLGGLLTMV LMP2A EBV PMID:34811538 tetramer-sort yes amplicon-seq effector memory T cells healthy healthy_6 chip0516_806579 PBMC +13177 CATELGANNLFF TRAV17*01 TRAJ36*01 CASTPFIRAAVDEQFF TRBV6-1*01 TRBJ2-1*01 HLA-A*02:01 B2M MHCI LLFNILGGWV NS4B HCV PMID:34811538 tetramer-sort yes amplicon-seq Naive T cells healthy healthy_6 chip0516_16153 PBMC +13178 CAVALSSKSTF TRAV8-3*01 TRAJ27*01 HLA-A*02:01 B2M MHCI CLGGLLTMV LMP2A EBV PMID:34811538 tetramer-sort yes amplicon-seq effector memory T cells healthy healthy_6 chip0516_576285 PBMC +13179 CGADGKWag??gtSNSTLTF TRAV34*01 TRAJ53*01 HLA-A*02:01 B2M MHCI YLLEMLWRL LMP1 EBV PMID:34811538 tetramer-sort yes amplicon-seq central memory T cells healthy healthy_6 chip0516_198133 PBMC +13180 CVVNSPSGTYKYIF TRAV12-1*01 TRAJ40*01 HLA-A*02:01 B2M MHCI GILGFVFTL M1 InfluenzaA PMID:34811538 tetramer-sort yes amplicon-seq transitional T cells between effector and memory populations healthy healthy_6 chip0516_328818 PBMC +13181 SVT*CGWtc??ctSFGTLTF TRAV35*01 TRAJ52*01 CASSLSFRGGSDNSPLHF TRBV7-6*01 TRBJ1-6*01 HLA-A*02:01 B2M MHCI FMYSDFHFI PA InfluenzaA PMID:34811538 tetramer-sort yes amplicon-seq Naive T cells healthy healthy_7 chip0516_164288 PBMC +13182 CAEKPSYNTDKLIF TRAV13-2*01 TRAJ34*01 CASQGFGNTEAFF TRBV9*01 TRBJ1-1*01 HLA-B*08:01 B2M MHCI RPIIRPATL NP InfluenzaA PMID:34811538 tetramer-sort yes amplicon-seq effector T cells healthy healthy_8 chip0516_746677 PBMC +13183 CAFSNSNSGYALNF TRAV12-2*01 TRAJ41*01 CASSFGLGENTEAFF TRBV5-1*01 TRBJ1-1*01 HLA-B*08:01 B2M MHCI RAKFKQLL BZLF1 EBV PMID:34811538 tetramer-sort yes amplicon-seq effector memory T cells healthy healthy_8 chip0516_181419 PBMC +13184 CAVNMRSPSHPFSF TRAV12-2*01 TRAJ49*01 CASSFYEQYF TRBV28*01 TRBJ2-7*01 HLA-A*02:01 B2M MHCI YLQQNWWTL LMP1 EBV PMID:34811538 tetramer-sort yes amplicon-seq central memory T cells healthy healthy_7 chip0516_19004 PBMC +13185 CASSSEVGVGEQFF TRBV7-9*01 TRBJ2-1*01 HLA-A*02:01 B2M MHCI KLVALGINAV NS3 HCV PMID:34811538 tetramer-sort yes amplicon-seq Naive T cells healthy healthy_7 chip0516_434572 PBMC +13186 CAVLMDSNYQLIW TRAV12-3*01 TRAJ33*01 CASSGDGMDTEAFF TRBV10-2*01 TRBJ1-1*01 HLA-A*02:01 B2M MHCI CLGGLLTMV LMP2A EBV PMID:34811538 tetramer-sort yes amplicon-seq effector memory T cells healthy healthy_6 chip0516_4497 PBMC +13187 CASSGDGMNTEAFF TRBV10-2*01 TRBJ1-1*01 HLA-A*02:01 B2M MHCI CLGGLLTMV LMP2A EBV PMID:34811538 tetramer-sort yes amplicon-seq effector memory T cells healthy healthy_6 chip0516_554361 PBMC +13188 CILPLAGGTSYGKLTF TRAV26-2*01 TRAJ52*01 CASSLGQAYEQYF TRBV7-8*01 TRBJ2-7*01 HLA-B*08:01 B2M MHCI FLRGRAYGL EBNA3A EBV PMID:34811538 tetramer-sort yes amplicon-seq central memory T cells healthy healthy_8 chip0516_784016 PBMC +13189 CILPLAGGTSYGKLTF TRAV26-2*01 TRAJ52*01 CASSLGQAYEQYF TRBV7-8*01 TRBJ2-7*01 HLA-B*08:01 B2M MHCI FLRGRAYGL EBNA3A EBV PMID:34811538 tetramer-sort yes amplicon-seq effector memory T cells healthy healthy_8 chip0516_298700 PBMC +13190 CASSQQGGNYGYTF TRBV6-1*01 TRBJ1-2*01 HLA-A*02:01 B2M MHCI FLYALALLL LMP2 EBV PMID:34811538 tetramer-sort yes amplicon-seq effector memory T cells healthy healthy_6 chip0516_162184 PBMC +13191 CAVNGGERSGGSNYKLTF TRAV12-2*01 TRAJ53*01 HLA-A*02:01 B2M MHCI YLLEMLWRL LMP1 EBV PMID:34811538 tetramer-sort yes amplicon-seq transitional T cells between effector and memory populations healthy healthy_6 chip0516_712032 PBMC +13193 CAMSAYLYGNKLVF TRAV12-3*01 TRAJ47*01 CASSSSSGAKNIQYF TRBV7-2*01 TRBJ2-4*01 HLA-B*08:01 B2M MHCI ILKGKFQTA NP InfluenzaA PMID:34811538 tetramer-sort yes amplicon-seq Naive T cells healthy healthy_9 chip0516_220334 PBMC +13194 CAMRDSTGGSNYKLTF TRAV14/DV4*01 TRAJ53*01 CASSSVPDMNTEAFF TRBV19*01 TRBJ1-1*01 HLA-B*08:01 B2M MHCI RPIIRPATL NP InfluenzaA PMID:34811538 tetramer-sort yes amplicon-seq transitional T cells between effector and memory populations healthy healthy_8 chip0516_565722 PBMC +13195 CAVTLTLYSGAGSYQLTF TRAV21*01 TRAJ28*01 CASSLMGTGGLSEKLFF TRBV28*01 TRBJ1-4*01 HLA-B*08:01 B2M MHCI QAKWRLQTL EBNA3A EBV PMID:34811538 tetramer-sort yes amplicon-seq effector memory T cells healthy healthy_8 chip0516_689169 PBMC +13196 CVVSDLISGGGADGLTF TRAV8-2*01 TRAJ45*01 CASSLVPSGDRPYNEQFF TRBV5-1*01 TRBJ2-1*01 HLA-B*08:01 B2M MHCI LWMRLLPL INS HomoSapiens PMID:34811538 tetramer-sort yes amplicon-seq Naive T cells healthy healthy_8 chip0516_354907 PBMC +13198 CAVGQEKVTF TRAV12-2*01 TRAJ13*01 CASRTVSYEQYF TRBV27*01 TRBJ2-7*01 HLA-A*02:01 B2M MHCI ALAGIGILTV MART1 HomoSapiens PMID:34811538 tetramer-sort yes amplicon-seq Naive T cells healthy healthy_7 chip0516_67781 PBMC +13200 CAMREGLGGKLIF TRAV14/DV4*01 TRAJ23*01 CASSPGTAVNTEAFF TRBV7-6*01 TRBJ1-1*01 HLA-B*08:01 B2M MHCI ILKGKFQTA NP InfluenzaA PMID:34811538 tetramer-sort yes amplicon-seq Naive T cells healthy healthy_8 chip0516_273249 PBMC +13201 CAVKTDTNAGKSTF TRAV12-2*01 TRAJ27*01 CASSDSIGFNSPLHF TRBV6-4*01 TRBJ1-6*01 HLA-B*08:01 B2M MHCI FLRGRAYGL EBNA3A EBV PMID:34811538 tetramer-sort yes amplicon-seq effector memory T cells healthy healthy_8 chip0516_248259 PBMC +13202 CASSAQGGNYGYTF TRBV6-1*01 TRBJ1-2*01 HLA-A*02:01 B2M MHCI FLYALALLL LMP2 EBV PMID:34811538 tetramer-sort yes amplicon-seq central memory T cells healthy healthy_7 chip0516_356012 PBMC +13203 CASGTASKLTF TRAV8-1*01 TRAJ44*01 CASSLDLLGSAITQYF TRBV11-2*01 TRBJ2-5*01 HLA-A*02:01 B2M MHCI YVLDHLIVV BRLF1 EBV PMID:34811538 tetramer-sort yes amplicon-seq effector memory T cells healthy healthy_6 chip0516_647930 PBMC +13204 CAAKGNTDKLIF TRAV13-1*01 TRAJ34*01 CASSFSGAILQETQYF TRBV7-9*01 TRBJ2-5*01 HLA-B*08:01 B2M MHCI HPRYFNQL GAD2 HomoSapiens PMID:34811538 tetramer-sort yes amplicon-seq Naive T cells healthy healthy_8 chip0516_450347 PBMC +13205 CSVEGPRGQFF TRBV29-1*01 TRBJ2-1*01 HLA-B*08:01 B2M MHCI RPIIRPATL NP InfluenzaA PMID:34811538 tetramer-sort yes amplicon-seq Naive T cells healthy healthy_9 chip0516_137617 PBMC +13206 CILSETSYDKVIF TRAV26-2*01 TRAJ50*01 HLA-B*08:01 B2M MHCI RAKFKQLL BZLF1 EBV PMID:34811538 tetramer-sort yes amplicon-seq Naive T cells healthy healthy_8 chip0516_496603 PBMC +13207 CAVALSSKSTF TRAV8-3*01 TRAJ27*01 CASSGDGMNTEAFF TRBV10-2*01 TRBJ1-1*01 HLA-A*02:01 B2M MHCI CLGGLLTMV LMP2A EBV PMID:34811538 tetramer-sort yes amplicon-seq effector memory T cells healthy healthy_6 chip0516_607804 PBMC +13208 CILPLAGGTSYGKLTF TRAV26-2*01 TRAJ52*01 CASSLGQAYEQYF TRBV7-8*01 TRBJ2-7*01 HLA-B*08:01 B2M MHCI FLRGRAYGL EBNA3A EBV PMID:34811538 tetramer-sort yes amplicon-seq effector T cells healthy healthy_8 chip0516_504911 PBMC +13209 CILPLAGGTSYGKLTF TRAV26-2*01 TRAJ52*01 HLA-B*08:01 B2M MHCI FLRGRAYGL EBNA3A EBV PMID:34811538 tetramer-sort yes amplicon-seq effector memory T cells healthy healthy_8 chip0516_439008 PBMC +13212 CILPLAGGTSYGKLTF TRAV26-2*01 TRAJ52*01 CASSLGQAYEQYF TRBV7-8*01 TRBJ2-7*01 HLA-B*08:01 B2M MHCI FLRGRAYGL EBNA3A EBV PMID:34811538 tetramer-sort yes amplicon-seq central memory T cells healthy healthy_8 chip0516_807270 PBMC +13213 CASSLGQAYEQYF TRBV7-8*01 TRBJ2-7*01 HLA-B*08:01 B2M MHCI FLRGRAYGL EBNA3A EBV PMID:34811538 tetramer-sort yes amplicon-seq effector memory T cells healthy healthy_8 chip0516_454761 PBMC +13214 CILPLAGGTSYGKLTF TRAV26-2*01 TRAJ52*01 CASSLGQAYEQYF TRBV7-8*01 TRBJ2-7*01 HLA-B*08:01 B2M MHCI FLRGRAYGL EBNA3A EBV PMID:34811538 tetramer-sort yes amplicon-seq effector T cells healthy healthy_8 chip0516_184643 PBMC +13215 CASSAGANSYNEQFF TRBV3-1*01 TRBJ2-1*01 HLA-A*01:01 B2M MHCI HSNLNDATY NP InfluenzaA PMID:34811538 tetramer-sort yes amplicon-seq effector T cells tet_neg chip0516_764325 PBMC +13216 CAMRGQTGANNLFF TRAV14/DV4*01 TRAJ36*01 HLA-B*08:01 B2M MHCI ELRSRYWAI NP InfluenzaA PMID:34811538 tetramer-sort yes amplicon-seq Naive T cells healthy healthy_8 chip0516_733811 PBMC +13217 CAGALGSSNTGKLTF TRAV27*01 TRAJ37*01 CASSIRSSYEQYF TRBV19*01 TRBJ2-7*01 HLA-A*02:01 B2M MHCI GILGFVFTL M1 InfluenzaA PMID:34811538 tetramer-sort yes amplicon-seq transitional T cells between effector and memory populations healthy healthy_7 chip0516_606813 PBMC +13218 CAV*NRDDKLIF TRAV1-2*01 TRAJ30*01 HLA-A*02:01 B2M MHCI ALAGIGILTV MART1 HomoSapiens PMID:34811538 tetramer-sort yes amplicon-seq central memory T cells healthy healthy_6 chip0516_291213 PBMC +13220 CASKGHVGAAQPQHF TRBV19*01 TRBJ1-5*01 HLA-A*02:01 B2M MHCI YVLDHLIVV BRLF1 EBV PMID:34811538 tetramer-sort yes amplicon-seq effector memory T cells healthy healthy_6 chip0516_188794 PBMC +13221 CASSLGQAYEQYF TRBV7-8*01 TRBJ2-7*01 HLA-B*08:01 B2M MHCI FLRGRAYGL EBNA3A EBV PMID:34811538 tetramer-sort yes amplicon-seq effector memory T cells healthy healthy_8 chip0516_36853 PBMC +13222 CAPLGga?AQKLVF TRAV13-1*01 TRAJ54*01 HLA-A*02:01 B2M MHCI LLAGIGTVPI PGT HomoSapiens PMID:34811538 tetramer-sort yes amplicon-seq Naive T cells healthy healthy_6 chip0516_617315 PBMC +13223 CAVNMNANNYGQNFVF TRAV12-2*01 TRAJ26*01 HLA-A*01:01 B2M MHCI STNVGSNTY IAPP HomoSapiens PMID:34811538 tetramer-sort yes amplicon-seq Naive T cells healthy healthy_8 chip0516_758189 PBMC +13224 CASSSTFPNTGELFF TRBV3-1*01 TRBJ2-2*01 HLA-B*08:01 B2M MHCI RAKFKQLL BZLF1 EBV PMID:34811538 tetramer-sort yes amplicon-seq effector memory T cells healthy healthy_8 chip0516_736964 PBMC +13225 CAVKGVSGSGTYKYIF TRAV12-2*01 TRAJ40*01 CASSLRDGRTDYGYTF TRBV19*01 TRBJ1-2*01 HLA-A*02:01 B2M MHCI ALTAVAEEV PTPRN HomoSapiens PMID:34811538 tetramer-sort yes amplicon-seq Naive T cells healthy healthy_7 chip0516_399081 PBMC +13227 CAVALSSKSTF TRAV8-3*01 TRAJ27*01 CASSGDGMNTEAFF TRBV10-2*01 TRBJ1-1*01 HLA-A*02:01 B2M MHCI CLGGLLTMV LMP2A EBV PMID:34811538 tetramer-sort yes amplicon-seq effector memory T cells healthy healthy_6 chip0516_715102 PBMC +13228 CAVALSSKSTF TRAV8-3*01 TRAJ27*01 HLA-A*02:01 B2M MHCI CLGGLLTMV LMP2A EBV PMID:34811538 tetramer-sort yes amplicon-seq effector memory T cells healthy healthy_6 chip0516_319659 PBMC +13230 CILPLAGGTSYGKLTF TRAV26-2*01 TRAJ52*01 CASSLGQAYEQYF TRBV7-8*01 TRBJ2-7*01 HLA-B*08:01 B2M MHCI FLRGRAYGL EBNA3A EBV PMID:34811538 tetramer-sort yes amplicon-seq effector memory T cells healthy healthy_8 chip0516_87473 PBMC +13232 CAMNSGGSNYKLTF TRAV14/DV4*01 TRAJ53*01 HLA-B*08:01 B2M MHCI RPIIRPATL NP InfluenzaA PMID:34811538 tetramer-sort yes amplicon-seq transitional T cells between effector and memory populations healthy healthy_8 chip0516_32274 PBMC +13233 CASSGDGMNTEAFF TRBV10-2*01 TRBJ1-1*01 HLA-A*02:01 B2M MHCI CLGGLLTMV LMP2A EBV PMID:34811538 tetramer-sort yes amplicon-seq effector memory T cells healthy healthy_6 chip0516_651777 PBMC +13234 CASSYTLSTDTQYF TRBV6-5*01 TRBJ2-3*01 HLA-A*02:01 B2M MHCI YLLPGWKL VP3 RotavirusA PMID:34811538 tetramer-sort yes amplicon-seq Naive T cells healthy healthy_7 chip0516_388756 PBMC +13236 CAATGTASKLTF TRAV29/DV5*01 TRAJ44*01 CSARALGKGDTQYF TRBV20-1*01 TRBJ2-3*01 HLA-B*08:01 B2M MHCI MALWMRLL INS HomoSapiens PMID:34811538 tetramer-sort yes amplicon-seq Naive T cells healthy healthy_8 chip0516_164774 PBMC +13237 CILPLAGGTSYGKLTF TRAV26-2*01 TRAJ52*01 CASSLGQAYEQCF TRBV7-8*01 TRBJ2-7*01 HLA-B*08:01 B2M MHCI FLRGRAYGL EBNA3A EBV PMID:34811538 tetramer-sort yes amplicon-seq effector memory T cells healthy healthy_8 chip0516_795100 PBMC +13238 CASSSGQGDNEQFF TRBV11-3*01 TRBJ2-1*01 HLA-A*02:01 B2M MHCI GLCTLVAML BLMF1 EBV PMID:34811538 tetramer-sort yes amplicon-seq effector T cells healthy healthy_6 chip0516_856410 PBMC +13240 CASSLV??gSVEAFF TRBV11-3*01 TRBJ1-1*01 HLA-B*08:01 B2M MHCI RAKFKQLL BZLF1 EBV PMID:34811538 tetramer-sort yes amplicon-seq effector memory T cells healthy healthy_8 chip0516_399680 PBMC +13241 CSVEGGGLDEQFF TRBV29-1*01 TRBJ2-1*01 HLA-A*02:01 B2M MHCI LLAGIGTVPI PGT HomoSapiens PMID:34811538 tetramer-sort yes amplicon-seq Naive T cells healthy healthy_6 chip0516_863567 PBMC +13242 CSVGGQVWEQFF TRBV29-1*01 TRBJ2-1*01 HLA-A*02:01 B2M MHCI YLQQNWWTL LMP1 EBV PMID:34811538 tetramer-sort yes amplicon-seq transitional T cells between effector and memory populations healthy healthy_6 chip0516_449663 PBMC +13243 CAIKAGGYQKVTF TRAV12-3*01 TRAJ13*01 CSATDRGRPDEQFF TRBV20-1*01 TRBJ2-1*01 HLA-B*08:01 B2M MHCI FLKEKGGL Nef HIV-1 PMID:34811538 tetramer-sort yes amplicon-seq Naive T cells healthy healthy_8 chip0516_48912 PBMC +13244 CSFILDGEQYF TRBV29-1*01 TRBJ2-7*01 HLA-A*02:01 B2M MHCI LLAGIGTVPI PGT HomoSapiens PMID:34811538 tetramer-sort yes amplicon-seq Naive T cells healthy healthy_7 chip0516_650538 PBMC +13245 CASSLLAGARNEQFF TRBV7-9*01 TRBJ2-1*01 HLA-B*08:01 B2M MHCI RMMEYGTTM GAD2 HomoSapiens PMID:34811538 tetramer-sort yes amplicon-seq Naive T cells healthy healthy_9 chip0516_156288 PBMC +13246 CASSGDGMNTEAFF TRBV10-2*01 TRBJ1-1*01 HLA-A*02:01 B2M MHCI CLGGLLTMV LMP2A EBV PMID:34811538 tetramer-sort yes amplicon-seq effector memory T cells healthy healthy_6 chip0516_279747 PBMC +13247 CAWSVPYRGQLEAFF TRBV30*01 TRBJ1-1*01 HLA-A*02:01 B2M MHCI LLSLFSLWL ZNT8 HomoSapiens PMID:34811538 tetramer-sort yes amplicon-seq Naive T cells healthy healthy_7 chip0516_269910 PBMC +13248 CAMSISNFGNEKLTF TRAV12-3*01 TRAJ48*01 CASSLRDASSGNTIYF TRBV12-3*01,TRBV12-4*01 TRBJ1-3*01 HLA-A*02:01 B2M MHCI LLAGIGTVPI PGT HomoSapiens PMID:34811538 tetramer-sort yes amplicon-seq Naive T cells healthy healthy_6 chip0516_97276 PBMC +13249 CASSGDGMNTEAFF TRBV10-2*01 TRBJ1-1*01 HLA-A*02:01 B2M MHCI CLGGLLTMV LMP2A EBV PMID:34811538 tetramer-sort yes amplicon-seq effector memory T cells healthy healthy_6 chip0516_347686 PBMC +13250 CASSGDGMNTEAFF TRBV10-2*01 TRBJ1-1*01 HLA-A*02:01 B2M MHCI CLGGLLTMV LMP2A EBV PMID:34811538 tetramer-sort yes amplicon-seq effector memory T cells healthy healthy_6 chip0516_784568 PBMC +13252 CASSLYSRDSSEAFF TRBV7-9*01 TRBJ1-1*01 HLA-A*02:01 B2M MHCI NLFLFLFAV IGRP HomoSapiens PMID:34811538 tetramer-sort yes amplicon-seq effector T cells healthy healthy_6 chip0516_262175 PBMC +13254 CASSLAGPTANYGYTF TRBV12-3*01,TRBV12-4*01 TRBJ1-2*01 HLA-A*02:01 B2M MHCI LLAGIGTVPI PGT HomoSapiens PMID:34811538 tetramer-sort yes amplicon-seq Naive T cells healthy healthy_7 chip0516_784830 PBMC +13255 CAVALSSKSTF TRAV8-3*01 TRAJ27*01 HLA-A*02:01 B2M MHCI CLGGLLTMV LMP2A EBV PMID:34811538 tetramer-sort yes amplicon-seq effector memory T cells healthy healthy_6 chip0516_469820 PBMC +13257 CAPLGGNNRLAF TRAV16*01 TRAJ7*01 CASSPLLWSGNTIYF TRBV19*01 TRBJ1-3*01 HLA-A*02:01 B2M MHCI LALWGPDPAA INS HomoSapiens PMID:34811538 tetramer-sort yes amplicon-seq Naive T cells healthy healthy_6 chip0516_748660 PBMC +13258 CAENIGLGTDKLIF TRAV13-2*01 TRAJ34*01 CASGLFSANAVDGYTS TRBV12-5*01 TRBJ1-2*01 HLA-B*08:01 B2M MHCI HLKRNIVV GFAP HomoSapiens PMID:34811538 tetramer-sort yes amplicon-seq Naive T cells healthy healthy_8 chip0516_508237 PBMC +13259 CALQGAQKLVF TRAV38-1*01 TRAJ54*01 CASSGDGMNTEAFF TRBV10-2*01 TRBJ1-1*01 HLA-A*02:01 B2M MHCI YVLDHLIVV BRLF1 EBV PMID:34811538 tetramer-sort yes amplicon-seq effector T cells healthy healthy_6 chip0516_132795 PBMC +13260 CASSGNTEAFF TRBV2*01 TRBJ1-1*01 HLA-A*02:01 B2M MHCI ALAGIGILTV MART1 HomoSapiens PMID:34811538 tetramer-sort yes amplicon-seq Naive T cells healthy healthy_7 chip0516_224638 PBMC +13261 CAVRVPLta??acQGGKLIF TRAV1-1*01 TRAJ23*01 CASSLDRGEQFF TRBV27*01 TRBJ2-1*01 HLA-A*02:01 B2M MHCI ILSAHVATA ZNT8 HomoSapiens PMID:34811538 tetramer-sort yes amplicon-seq Naive T cells healthy healthy_6 chip0516_309257 PBMC +13263 CAFEADTGNQFYF TRAV24*01 TRAJ49*01 CASYSTSGGQETQYF TRBV2*01 TRBJ2-5*01 HLA-A*01:01 B2M MHCI CTELKLSDY NP InfluenzaA PMID:34811538 tetramer-sort yes amplicon-seq central memory T cells healthy healthy_8 chip0516_511037 PBMC +13264 CASSFKDPYEQYF TRBV27*01 TRBJ2-7*01 HLA-B*08:01 B2M MHCI QAKWRLQTL EBNA3A EBV PMID:34811538 tetramer-sort yes amplicon-seq transitional T cells between effector and memory populations healthy healthy_8 chip0516_510723 PBMC +13265 CGTEPPLGYGKLTF TRAV30*01 TRAJ52*01 CASSVVGSGTEAFF TRBV9*01 TRBJ1-1*01 HLA-A*02:01 B2M MHCI YVLDHLIVV BRLF1 EBV PMID:34811538 tetramer-sort yes amplicon-seq Naive T cells healthy healthy_7 chip0516_489768 PBMC +13266 CASSLREFHETQYF TRBV6-1*01 TRBJ2-5*01 HLA-B*08:01 B2M MHCI FLRGRAYGL EBNA3A EBV PMID:34811538 tetramer-sort yes amplicon-seq transitional T cells between effector and memory populations healthy healthy_8 chip0516_291148 PBMC +13267 CASSGDGMNTEAFF TRBV10-2*01 TRBJ1-1*01 HLA-A*02:01 B2M MHCI CLGGLLTMV LMP2A EBV PMID:34811538 tetramer-sort yes amplicon-seq effector memory T cells healthy healthy_6 chip0516_877467 PBMC +13268 CASSEFRGMGYF TRBV2*01 TRBJ2-4*01 HLA-B*08:01 B2M MHCI RVKEKYQHL gp160 HIV-1 PMID:34811538 tetramer-sort yes amplicon-seq Naive T cells healthy healthy_9 chip0516_623361 PBMC +13269 CILPLPGGPSYGKLTF TRAV26-2*01 TRAJ52*01 CASSLGQAYEQYF TRBV7-8*01 TRBJ2-7*01 HLA-B*08:01 B2M MHCI FLRGRAYGL EBNA3A EBV PMID:34811538 tetramer-sort yes amplicon-seq effector memory T cells healthy healthy_8 chip0516_298793 PBMC +13271 CAVMDSNYQLIW TRAV12-2*01 TRAJ33*01 CSVLQGREQYF TRBV29-1*01 TRBJ2-7*01 HLA-B*08:01 B2M MHCI ILKLQVFL IAPP HomoSapiens PMID:34811538 tetramer-sort yes amplicon-seq Naive T cells healthy healthy_8 chip0516_475613 PBMC +13272 CAFRSYNTDKLIF TRAV20*01 TRAJ34*01 HLA-B*08:01 B2M MHCI RPIIRPATL NP InfluenzaA PMID:34811538 tetramer-sort yes amplicon-seq transitional T cells between effector and memory populations healthy healthy_8 chip0516_837389 PBMC +13273 CAAVNTDKLIF TRAV29/DV5*01 TRAJ34*01 HLA-B*08:01 B2M MHCI RAKFKQLL BZLF1 EBV PMID:34811538 tetramer-sort yes amplicon-seq transitional T cells between effector and memory populations healthy healthy_8 chip0516_190845 PBMC +13274 CAFLGPYNNNDMRF TRAV38-1*01 TRAJ43*01 CASSQARDRGWTEAFF TRBV3-1*01 TRBJ1-1*01 HLA-B*08:01 B2M MHCI RPIIRPATL NP InfluenzaA PMID:34811538 tetramer-sort yes amplicon-seq transitional T cells between effector and memory populations healthy healthy_8 chip0516_806987 PBMC +13276 CAFRSYNTNKLIF TRAV20*01 TRAJ34*01 HLA-B*08:01 B2M MHCI RPIIRPATL NP InfluenzaA PMID:34811538 tetramer-sort yes amplicon-seq transitional T cells between effector and memory populations healthy healthy_8 chip0516_822725 PBMC +13278 CTESGSAASPGHLLF TRAV5*01 TRAJ42*01 CASSSYSNQPQHF TRBV19*01 TRBJ1-5*01 HLA-A*02:01 B2M MHCI GILGFVFTL M1 InfluenzaA PMID:34811538 tetramer-sort yes amplicon-seq transitional T cells between effector and memory populations healthy healthy_7 chip0516_750272 PBMC +13279 CAVALSSKSTF TRAV8-3*01 TRAJ27*01 CASSGDGMNTEAFF TRBV10-2*01 TRBJ1-1*01 HLA-A*02:01 B2M MHCI CLGGLLTMV LMP2A EBV PMID:34811538 tetramer-sort yes amplicon-seq effector memory T cells healthy healthy_6 chip0516_564071 PBMC +13281 CAVEDQS??tAGNKLTF TRAV2*01 TRAJ17*01 HLA-B*08:01 B2M MHCI ELRSRYWAI NP InfluenzaA PMID:34811538 tetramer-sort yes amplicon-seq transitional T cells between effector and memory populations healthy healthy_10 chip0516_343298 PBMC +13282 CASSPLGGADGYTF TRBV6-1*01 TRBJ1-2*01 HLA-A*02:01 B2M MHCI FLYALALLL LMP2 EBV PMID:34811538 tetramer-sort yes amplicon-seq central memory T cells healthy healthy_6 chip0516_69662 PBMC +13283 CAVRENNNARLMF TRAV1-2*01 TRAJ31*01 CVPVGSGGVLDTQYF TRBV2*01 TRBJ2-3*01 HLA-B*08:01 B2M MHCI ALKCKGFHV NP InfluenzaA PMID:34811538 tetramer-sort yes amplicon-seq Naive T cells healthy healthy_8 chip0516_783513 PBMC +13284 CAMRALFPc?tGSARQLTC TRAV14/DV4*01 TRAJ22*01 CASSLAGAYEQYF TRBV5-4*01 TRBJ2-7*01 HLA-B*08:01 B2M MHCI QAKWRLQTL EBNA3A EBV PMID:34811538 tetramer-sort yes amplicon-seq Naive T cells healthy healthy_8 chip0516_311181 PBMC +13285 CILPLAGGTSYGKLTF TRAV26-2*01 TRAJ52*01 HLA-B*08:01 B2M MHCI FLRGRAYGL EBNA3A EBV PMID:34811538 tetramer-sort yes amplicon-seq transitional T cells between effector and memory populations healthy healthy_8 chip0516_327214 PBMC +13286 CILPLAGGTSYGKLTF TRAV26-2*01 TRAJ52*01 CASSLGQAYEQYF TRBV7-8*01 TRBJ2-7*01 HLA-B*08:01 B2M MHCI FLRGRAYGL EBNA3A EBV PMID:34811538 tetramer-sort yes amplicon-seq transitional T cells between effector and memory populations healthy healthy_8 chip0516_248997 PBMC +13287 CAPWDFNKFYF TRAV13-1*01 TRAJ21*01 CASSLRGGNTEAFF TRBV7-2*01 TRBJ1-1*01 HLA-B*08:01 B2M MHCI RAKFKQLL BZLF1 EBV PMID:34811538 tetramer-sort yes amplicon-seq effector memory T cells healthy healthy_9 chip0516_507015 PBMC +13288 CAVALSSKSTF TRAV8-3*01 TRAJ27*01 CASSGDGMNTEAFF TRBV10-2*01 TRBJ1-1*01 HLA-A*02:01 B2M MHCI CLGGLLTMV LMP2A EBV PMID:34811538 tetramer-sort yes amplicon-seq effector memory T cells healthy healthy_6 chip0516_882226 PBMC +13289 CAVALSSKSTF TRAV8-3*01 TRAJ27*01 HLA-A*02:01 B2M MHCI CLGGLLTMV LMP2A EBV PMID:34811538 tetramer-sort yes amplicon-seq effector memory T cells healthy healthy_6 chip0516_249389 PBMC +13290 CASSLGQAYEQYF TRBV7-8*01 TRBJ2-7*01 HLA-B*08:01 B2M MHCI FLRGRAYGL EBNA3A EBV PMID:34811538 tetramer-sort yes amplicon-seq effector T cells healthy healthy_8 chip0516_817016 PBMC +13291 CAMSISNFGNEKLTF TRAV12-3*01 TRAJ48*01 HLA-A*02:01 B2M MHCI LLAGIGTVPI PGT HomoSapiens PMID:34811538 tetramer-sort yes amplicon-seq Naive T cells healthy healthy_7 chip0516_100973 PBMC +13292 CAMREALAAc?gKAAGNKLTF TRAV14/DV4*01 TRAJ17*01 CASSLILAAGSEQFF TRBV7-3*01 TRBJ2-1*01 HLA-B*08:01 B2M MHCI RAKFKQLL BZLF1 EBV PMID:34811538 tetramer-sort yes amplicon-seq Naive T cells healthy healthy_8 chip0516_570974 PBMC +13293 CILPLAGGTSYGKLTF TRAV26-2*01 TRAJ52*01 HLA-B*08:01 B2M MHCI FLRGRAYGL EBNA3A EBV PMID:34811538 tetramer-sort yes amplicon-seq effector memory T cells healthy healthy_8 chip0516_547963 PBMC +13294 CILPLAGGTSYGKLTF TRAV26-2*01 TRAJ52*01 CASSLGQAYEQYF TRBV7-8*01 TRBJ2-7*01 HLA-B*08:01 B2M MHCI FLRGRAYGL EBNA3A EBV PMID:34811538 tetramer-sort yes amplicon-seq effector memory T cells healthy healthy_8 chip0516_732967 PBMC +13295 CAVTLTLSSGAGSYQLTF TRAV21*01 TRAJ28*01 CASSLMGTGGLSEKLFS TRBV28*01 TRBJ1-4*01 HLA-B*08:01 B2M MHCI QAKWRLQTL EBNA3A EBV PMID:34811538 tetramer-sort yes amplicon-seq central memory T cells healthy healthy_8 chip0516_143902 PBMC +13296 CASNLGQAYEQYF TRBV7-8*01 TRBJ2-7*01 HLA-B*08:01 B2M MHCI FLRGRAYGL EBNA3A EBV PMID:34811538 tetramer-sort yes amplicon-seq effector memory T cells healthy healthy_8 chip0516_406777 PBMC +13298 CILPLAGGTSYG*LTF TRAV26-2*01 TRAJ52*01 CASSSGQAYEQYF TRBV7-8*01 TRBJ2-7*01 HLA-B*08:01 B2M MHCI FLRGRAYGL EBNA3A EBV PMID:34811538 tetramer-sort yes amplicon-seq effector memory T cells healthy healthy_8 chip0516_324151 PBMC +13299 YAVEDQS??tAGNKLIF TRAV2*01 TRAJ17*01 HLA-B*08:01 B2M MHCI ELRSRYWAI NP InfluenzaA PMID:34811538 tetramer-sort yes amplicon-seq transitional T cells between effector and memory populations healthy healthy_10 chip0516_74612 PBMC +13300 CAVHFSDGQKLLF TRAV36/DV7*01 TRAJ16*01 CRGQTNLa?cYTGELFF TRBV20-1*01 TRBJ2-2*01 HLA-A*01:01 B2M MHCI CTELKLSDY NP InfluenzaA PMID:34811538 tetramer-sort yes amplicon-seq transitional T cells between effector and memory populations healthy healthy_10 chip0516_685407 PBMC +13301 CILPLAGGTSYGKLTF TRAV26-2*01 TRAJ52*01 CASSLGQAYEQYF TRBV7-8*01 TRBJ2-7*01 HLA-B*08:01 B2M MHCI FLRGRAYGL EBNA3A EBV PMID:34811538 tetramer-sort yes amplicon-seq effector T cells healthy healthy_8 chip0516_4044 PBMC +13303 CASSSWTAQYEQYF TRBV28*01 TRBJ2-7*01 HLA-A*02:01 B2M MHCI SLYQLENYC PREINS HomoSapiens PMID:34811538 tetramer-sort yes amplicon-seq Naive T cells healthy healthy_7 chip0516_729135 PBMC +13304 CSALGDRGLRGNQPQHF TRBV20-1*01 TRBJ1-5*01 HLA-A*02:01 B2M MHCI GLCTLVAML BLMF1 EBV PMID:34811538 tetramer-sort yes amplicon-seq effector memory T cells healthy healthy_6 chip0516_387464 PBMC +13305 CAVALSSKSTF TRAV8-3*01 TRAJ27*01 CASSGDGMNTEAFF TRBV10-2*01 TRBJ1-1*01 HLA-A*02:01 B2M MHCI CLGGLLTMV LMP2A EBV PMID:34811538 tetramer-sort yes amplicon-seq effector memory T cells healthy healthy_6 chip0516_200773 PBMC +13306 CILPLAGGTSYGKLTF TRAV26-2*01 TRAJ52*01 CASSSGQAYEQYF TRBV7-8*01 TRBJ2-7*01 HLA-B*08:01 B2M MHCI FLRGRAYGL EBNA3A EBV PMID:34811538 tetramer-sort yes amplicon-seq central memory T cells healthy healthy_8 chip0516_515231 PBMC +13309 CAESAGTALIF TRAV13-2*01 TRAJ15*01 CASSQVVRQPQHF TRBV4-1*01 TRBJ1-5*01 HLA-B*08:01 B2M MHCI QAKWRLQTL EBNA3A EBV PMID:34811538 tetramer-sort yes amplicon-seq Naive T cells healthy healthy_8 chip0516_484127 PBMC +13310 CAVALSSKSTF TRAV8-3*01 TRAJ27*01 CASSGDGMNTEAFF TRBV10-2*01 TRBJ1-1*01 HLA-A*02:01 B2M MHCI CLGGLLTMV LMP2A EBV PMID:34811538 tetramer-sort yes amplicon-seq effector memory T cells healthy healthy_6 chip0516_245928 PBMC +13313 CASSYLGGGFGYTF TRBV6-5*01 TRBJ1-2*01 HLA-A*02:01 B2M MHCI FLYALALLL LMP2 EBV PMID:34811538 tetramer-sort yes amplicon-seq transitional T cells between effector and memory populations healthy healthy_6 chip0516_485545 PBMC +13314 CATVLDMEYGNKLVF TRAV17*01 TRAJ47*01 CASSGGDag?GHDQPQHF TRBV7-9*01 TRBJ1-5*01 HLA-A*02:01 B2M MHCI GILGFVFTL M1 InfluenzaA PMID:34811538 tetramer-sort yes amplicon-seq transitional T cells between effector and memory populations healthy healthy_7 chip0516_606145 PBMC +13315 CILPLAGGTSYGKLTF TRAV26-2*01 TRAJ52*01 HLA-B*08:01 B2M MHCI FLRGRAYGL EBNA3A EBV PMID:34811538 tetramer-sort yes amplicon-seq central memory T cells healthy healthy_8 chip0516_194924 PBMC +13316 CIAESGAGSYQLTF TRAV26-1*01 TRAJ28*01 CASSLEEGQTQYF TRBV5-1*01 TRBJ2-5*01 HLA-A*02:01 B2M MHCI SLNYSGVKEL ZNT8 HomoSapiens PMID:34811538 tetramer-sort yes amplicon-seq Naive T cells healthy healthy_6 chip0516_514047 PBMC +13320 CILPLAGGTSYGKLTF TRAV26-2*01 TRAJ52*01 CASSSGQAYEQYF TRBV7-8*01 TRBJ2-7*01 HLA-B*08:01 B2M MHCI FLRGRAYGL EBNA3A EBV PMID:34811538 tetramer-sort yes amplicon-seq effector memory T cells healthy healthy_8 chip0516_183642 PBMC +13324 CAVALSSKSTF TRAV8-3*01 TRAJ27*01 CASSGDGMNTEAFF TRBV10-2*01 TRBJ1-1*01 HLA-A*02:01 B2M MHCI CLGGLLTMV LMP2A EBV PMID:34811538 tetramer-sort yes amplicon-seq effector memory T cells healthy healthy_6 chip0516_594242 PBMC +13325 CASSEWAGNSNQPQHF TRBV2*01 TRBJ1-5*01 HLA-B*08:01 B2M MHCI HPRYFNQL GAD2 HomoSapiens PMID:34811538 tetramer-sort yes amplicon-seq transitional T cells between effector and memory populations healthy healthy_8 chip0516_753765 PBMC +13326 CASSPPYNEQFF TRBV7-8*01 TRBJ2-1*01 HLA-A*02:01 B2M MHCI LLSLFSLWL ZNT8 HomoSapiens PMID:34811538 tetramer-sort yes amplicon-seq transitional T cells between effector and memory populations healthy healthy_6 chip0516_278556 PBMC +13327 CAVKTDTNAGKSTF TRAV12-2*01 TRAJ27*01 CASSDSIGFNSPLHF TRBV6-4*01 TRBJ1-6*01 HLA-B*08:01 B2M MHCI FLRGRAYGL EBNA3A EBV PMID:34811538 tetramer-sort yes amplicon-seq effector memory T cells healthy healthy_8 chip0516_254012 PBMC +13328 CAVALSSKSTF TRAV8-3*01 TRAJ27*01 HLA-A*02:01 B2M MHCI CLGGLLTMV LMP2A EBV PMID:34811538 tetramer-sort yes amplicon-seq effector T cells healthy healthy_6 chip0516_808671 PBMC +13329 CASSFRRDPINYGYTF TRBV27*01 TRBJ1-2*01 HLA-B*08:01 B2M MHCI YAYAKWKL ZNT8 HomoSapiens PMID:34811538 tetramer-sort yes amplicon-seq Naive T cells healthy healthy_9 chip0516_489498 PBMC +13331 CASSAQRVNTEAFF TRBV2*01 TRBJ1-1*01 HLA-B*08:01 B2M MHCI QAKWRLQTL EBNA3A EBV PMID:34811538 tetramer-sort yes amplicon-seq Naive T cells healthy healthy_8 chip0516_463053 PBMC +13332 FVDAISNFWNEKLTF TRAV12-1*01 TRAJ48*01 CLTGGQRVNEQFF TRBV2*01 TRBJ2-1*01 HLA-A*02:01 B2M MHCI LLAGIGTVPI PGT HomoSapiens PMID:34811538 tetramer-sort yes amplicon-seq Naive T cells healthy healthy_7 chip0516_755978 PBMC +13333 CILPLAGGTSYGKLTF TRAV26-2*01 TRAJ52*01 CASSLGQAYEQYF TRBV7-8*01 TRBJ2-7*01 HLA-B*08:01 B2M MHCI FLRGRAYGL EBNA3A EBV PMID:34811538 tetramer-sort yes amplicon-seq effector memory T cells healthy healthy_8 chip0516_827324 PBMC +13334 CVVSAEPtg??gtGSNKLIF TRAV10*01 TRAJ4*01 HLA-A*02:01 B2M MHCI LLAGIGTVPI PGT HomoSapiens PMID:34811538 tetramer-sort yes amplicon-seq Naive T cells healthy healthy_7 chip0516_697757 PBMC +13335 CIVRVRDGLTF TRAV26-1*01 TRAJ45*01 CAWGLDGNEQFF TRBV30*01 TRBJ2-1*01 HLA-A*02:01 B2M MHCI GIIYIIYKL P3A CoxsackievirusB PMID:34811538 tetramer-sort yes amplicon-seq transitional T cells between effector and memory populations healthy healthy_6 chip0516_871011 PBMC +13337 CASSQDRGLSGNTIYF TRBV3-1*01 TRBJ1-3*01 HLA-B*08:01 B2M MHCI RVKEKYQHL gp160 HIV-1 PMID:34811538 tetramer-sort yes amplicon-seq Naive T cells healthy healthy_10 chip0516_237009 PBMC +13338 CASSGPYEQYF TRBV28*01 TRBJ2-7*01 HLA-B*08:01 B2M MHCI MALWMRLL INS HomoSapiens PMID:34811538 tetramer-sort yes amplicon-seq Naive T cells healthy healthy_9 chip0516_227206 PBMC +13339 CASGAQGGGYGYTF TRBV6-1*01 TRBJ1-2*01 HLA-A*02:01 B2M MHCI FLYALALLL LMP2 EBV PMID:34811538 tetramer-sort yes amplicon-seq central memory T cells healthy healthy_6 chip0516_368768 PBMC +13340 CAVALSSKSTF TRAV8-3*01 TRAJ27*01 CASSGDGMNTEAFF TRBV10-2*01 TRBJ1-1*01 HLA-A*02:01 B2M MHCI CLGGLLTMV LMP2A EBV PMID:34811538 tetramer-sort yes amplicon-seq effector memory T cells healthy healthy_6 chip0516_225288 PBMC +13341 CAWSRFGGFGYGYTF TRBV30*01 TRBJ1-2*01 HLA-A*01:01 B2M MHCI LVSDGGPNLY PB1 InfluenzaA PMID:34811538 tetramer-sort yes amplicon-seq transitional T cells between effector and memory populations healthy healthy_9 chip0516_700353 PBMC +13342 CSVEIGGYNEQFF TRBV29-1*01 TRBJ2-1*01 HLA-A*02:01 B2M MHCI SLISGMWLL VP2 RotavirusA PMID:34811538 tetramer-sort yes amplicon-seq transitional T cells between effector and memory populations healthy healthy_6 chip0516_775986 PBMC +13343 CAVTLTLYSGAGSYQLTF TRAV21*01 TRAJ28*01 CASSLMGTGGLSEKLFF TRBV28*01 TRBJ1-4*01 HLA-B*08:01 B2M MHCI QAKWRLQTL EBNA3A EBV PMID:34811538 tetramer-sort yes amplicon-seq transitional T cells between effector and memory populations healthy healthy_8 chip0516_696791 PBMC +13344 CASSREGWEQYF TRBV7-9*01 TRBJ2-7*01 HLA-A*01:01 B2M MHCI HSNLNDATY NP InfluenzaA PMID:34811538 tetramer-sort yes amplicon-seq Naive T cells healthy healthy_8 chip0516_489389 PBMC +13345 CAVLMDSNYQLIW TRAV12-3*01 TRAJ33*01 HLA-A*02:01 B2M MHCI CLGGLLTMV LMP2A EBV PMID:34811538 tetramer-sort yes amplicon-seq effector memory T cells healthy healthy_6 chip0516_463770 PBMC +13347 CASSTQTAPDDTQYF TRBV7-9*01 TRBJ2-3*01 HLA-B*08:01 B2M MHCI RAKFKQLL BZLF1 EBV PMID:34811538 tetramer-sort yes amplicon-seq effector memory T cells healthy healthy_8 chip0516_80389 PBMC +13348 CASSLVGGEAFF TRBV19*01 TRBJ1-1*01 HLA-B*08:01 B2M MHCI RPIIRPATL NP InfluenzaA PMID:34811538 tetramer-sort yes amplicon-seq transitional T cells between effector and memory populations healthy healthy_8 chip0516_681478 PBMC +13349 CASSGDGMNTEAFF TRBV10-2*01 TRBJ1-1*01 HLA-A*02:01 B2M MHCI CLGGLLTMV LMP2A EBV PMID:34811538 tetramer-sort yes amplicon-seq effector T cells healthy healthy_6 chip0516_363286 PBMC +13350 CALSEPYSGGGADGLTF TRAV19*01 TRAJ45*01 CASSLAGGGTDTQYF TRBV7-2*01 TRBJ2-3*01 HLA-B*08:01 B2M MHCI QAKWRLQTL EBNA3A EBV PMID:34811538 tetramer-sort yes amplicon-seq Naive T cells healthy healthy_9 chip0516_493678 PBMC +13351 CAVALSSKSTF TRAV8-3*01 TRAJ27*01 CARSGAGMNTEAFF TRBV10-2*01 TRBJ1-1*01 HLA-A*02:01 B2M MHCI CLGGLLTMV LMP2A EBV PMID:34811538 tetramer-sort yes amplicon-seq effector memory T cells healthy healthy_6 chip0516_610637 PBMC +13352 CDSNQNEGQVDYEQHF TRBV4-1*01 TRBJ2-7*01 HLA-A*02:01 B2M MHCI GILGFVFTL M1 InfluenzaA PMID:34811538 tetramer-sort yes amplicon-seq Naive T cells healthy healthy_7 chip0516_191454 PBMC +13353 CKATWIg?tYNEQIF TRBV20-1*01 TRBJ2-1*01 HLA-B*08:01 B2M MHCI MMIARFKM GAD2 HomoSapiens PMID:34811538 tetramer-sort yes amplicon-seq Naive T cells healthy healthy_9 chip0516_241802 PBMC +13354 CAVLMDSNYQLIW TRAV12-3*01 TRAJ33*01 CASSGDGMNTEAFF TRBV10-2*01 TRBJ1-1*01 HLA-A*02:01 B2M MHCI CLGGLLTMV LMP2A EBV PMID:34811538 tetramer-sort yes amplicon-seq effector memory T cells healthy healthy_6 chip0516_458494 PBMC +13355 CILPLAGGTSFGQLTF TRAV26-2*01 TRAJ52*01 CASSLGQAYEQYF TRBV7-8*01 TRBJ2-7*01 HLA-B*08:01 B2M MHCI FLRGRAYGL EBNA3A EBV PMID:34811538 tetramer-sort yes amplicon-seq central memory T cells healthy healthy_8 chip0516_843773 PBMC +13357 CAAGSYNFNKFYF TRAV13-1*01 TRAJ21*01 HLA-A*02:01 B2M MHCI YLLPGWKL VP3 RotavirusA PMID:34811538 tetramer-sort yes amplicon-seq Naive T cells healthy healthy_6 chip0516_427566 PBMC +13360 CASSGDGMNTEAFF TRBV10-2*01 TRBJ1-1*01 HLA-A*02:01 B2M MHCI CLGGLLTMV LMP2A EBV PMID:34811538 tetramer-sort yes amplicon-seq effector memory T cells healthy healthy_6 chip0516_817117 PBMC +13361 CAENEGVGNTPLVF TRAV13-2*01 TRAJ29*01 CASTPGRKDEKLFF TRBV2*01 TRBJ1-4*01 HLA-B*08:01 B2M MHCI HLKRNIVV GFAP HomoSapiens PMID:34811538 tetramer-sort yes amplicon-seq Naive T cells healthy healthy_8 chip0516_656156 PBMC +13362 CAARNTNAGKSTF TRAV13-1*01 TRAJ27*01 CASSYTAKTDTSNQPQHF TRBV6-2*01,TRBV6-3*01 TRBJ1-5*01 HLA-A*02:01 B2M MHCI GILGFVFTL M1 InfluenzaA PMID:34811538 tetramer-sort yes amplicon-seq transitional T cells between effector and memory populations healthy healthy_6 chip0516_482760 PBMC +13364 CATVLGLYSGAGSYQLTF TRAV17*01 TRAJ28*01 CASSDLGAATFTDTQYF TRBV28*01 TRBJ2-3*01 HLA-B*08:01 B2M MHCI QAKWRLQTL EBNA3A EBV PMID:34811538 tetramer-sort yes amplicon-seq effector T cells healthy healthy_9 chip0516_128321 PBMC +13365 CAVRGA??cTDQLLF TRAV1-2*01 TRAJ34*01 HLA-B*08:01 B2M MHCI MMIARFKM GAD2 HomoSapiens PMID:34811538 tetramer-sort yes amplicon-seq Naive T cells healthy healthy_8 chip0516_49289 PBMC +13366 CAVLMDSNYQLIW TRAV21*01 TRAJ33*01 HLA-A*02:01 B2M MHCI CLGGLLTMV LMP2A EBV PMID:34811538 tetramer-sort yes amplicon-seq effector memory T cells healthy healthy_6 chip0516_657474 PBMC +13369 CASSTLAGGQDTQYF TRBV6-1*01 TRBJ2-3*01 HLA-A*02:01 B2M MHCI KLQVFLIVL IAPP HomoSapiens PMID:34811538 tetramer-sort yes amplicon-seq Naive T cells healthy healthy_6 chip0516_833229 PBMC +13370 CAVITYSgg?AGSYPLPF TRAV12-2*01 TRAJ28*01 HLA-B*08:01 B2M MHCI RAKFKQLL BZLF1 EBV PMID:34811538 tetramer-sort yes amplicon-seq effector T cells healthy healthy_8 chip0516_738901 PBMC +13371 CASSGDGMNTEAFF TRBV10-2*01 TRBJ1-1*01 HLA-A*02:01 B2M MHCI CLGGLLTMV LMP2A EBV PMID:34811538 tetramer-sort yes amplicon-seq effector memory T cells healthy healthy_6 chip0516_224941 PBMC +13372 CSATPGLVGDEQYF TRBV20-1*01 TRBJ2-7*01 HLA-A*02:01 B2M MHCI ALAGIGILTV MART1 HomoSapiens PMID:34811538 tetramer-sort yes amplicon-seq Naive T cells healthy healthy_7 chip0516_184609 PBMC +13373 CAMSLSNFGNEKLTF TRAV12-3*01 TRAJ48*01 CSARDRVNQPQHF TRBV20-1*01 TRBJ1-5*01 HLA-A*02:01 B2M MHCI LLAGIGTVPI PGT HomoSapiens PMID:34811538 tetramer-sort yes amplicon-seq Naive T cells healthy healthy_7 chip0516_332073 PBMC +13374 CILPLAGGTSYGKLTF TRAV26-2*01 TRAJ52*01 HLA-B*08:01 B2M MHCI FLRGRAYGL EBNA3A EBV PMID:34811538 tetramer-sort yes amplicon-seq effector memory T cells healthy healthy_8 chip0516_778601 PBMC +13375 CILPLAGGTSYGKLTF TRAV26-2*01 TRAJ52*01 CASSLGQAYEQYF TRBV7-8*01 TRBJ2-7*01 HLA-B*08:01 B2M MHCI FLRGRAYGL EBNA3A EBV PMID:34811538 tetramer-sort yes amplicon-seq effector memory T cells healthy healthy_8 chip0516_623886 PBMC +13376 CASLRTSYGKLTF TRAV21*01 TRAJ52*01 HLA-B*08:01 B2M MHCI YLKDQQLL gp160 HIV-1 PMID:34811538 tetramer-sort yes amplicon-seq Naive T cells healthy healthy_8 chip0516_189129 PBMC +13377 CAISDAVHNTEAFF TRBV10-3*01 TRBJ1-1*01 HLA-B*08:01 B2M MHCI RAKFKQLL BZLF1 EBV PMID:34811538 tetramer-sort yes amplicon-seq effector memory T cells healthy healthy_8 chip0516_166453 PBMC +13378 CILPLAGGASYGKLTF TRAV26-2*01 TRAJ52*01 CASSLGQAYEQYF TRBV7-8*01 TRBJ2-7*01 HLA-B*08:01 B2M MHCI FLRGRAYGL EBNA3A EBV PMID:34811538 tetramer-sort yes amplicon-seq effector memory T cells healthy healthy_8 chip0516_583582 PBMC +13379 CASSYLGGGFGYTF TRBV6-5*01 TRBJ1-2*01 HLA-A*02:01 B2M MHCI FLYALALLL LMP2 EBV PMID:34811538 tetramer-sort yes amplicon-seq central memory T cells healthy healthy_6 chip0516_190114 PBMC +13380 CASTYSGRVPVGSYEQYF TRBV6-2*01,TRBV6-3*01 TRBJ2-7*01 HLA-A*02:01 B2M MHCI SLAAGVKLL PTPRN HomoSapiens PMID:34811538 tetramer-sort yes amplicon-seq Naive T cells healthy healthy_7 chip0516_593505 PBMC +13381 CAVGEDRLMF TRAV8-3*01 TRAJ31*01 CASSPSNGAGGYTF TRBV4-1*01 TRBJ1-2*01 HLA-B*08:01 B2M MHCI RAKFKQLL BZLF1 EBV PMID:34811538 tetramer-sort yes amplicon-seq effector memory T cells healthy healthy_9 chip0516_39827 PBMC +13383 CAMRAAGYSGAGSYQLTF TRAV14/DV4*01 TRAJ28*01 HLA-B*08:01 B2M MHCI RPIIRPATL NP InfluenzaA PMID:34811538 tetramer-sort yes amplicon-seq transitional T cells between effector and memory populations healthy healthy_8 chip0516_399062 PBMC +13384 CAENWRSGAGSYQLTF TRAV13-2*01 TRAJ28*01 HLA-A*01:01 B2M MHCI CTELKLSDY NP InfluenzaA PMID:34811538 tetramer-sort yes amplicon-seq effector T cells healthy healthy_9 chip0516_389071 PBMC +13386 CAVALSSKSTF TRAV8-3*01 TRAJ27*01 CASSGDGMNTEAFF TRBV10-2*01 TRBJ1-1*01 HLA-A*02:01 B2M MHCI CLGGLLTMV LMP2A EBV PMID:34811538 tetramer-sort yes amplicon-seq effector memory T cells healthy healthy_6 chip0516_714740 PBMC +13387 CAYHMNAGGTSYGKLTF TRAV38-2/DV8*01 TRAJ52*01 CASSIGVYGYTF TRBV19*01 TRBJ1-2*01 HLA-A*02:01 B2M MHCI GILGFVFTL M1 InfluenzaA PMID:34811538 tetramer-sort yes amplicon-seq central memory T cells healthy healthy_7 chip0516_825964 PBMC +13388 CASRLAEDEQFF TRBV5-1*01 TRBJ2-1*01 HLA-B*08:01 B2M MHCI YAKWKLCSA ZNT8 HomoSapiens PMID:34811538 tetramer-sort yes amplicon-seq Naive T cells healthy healthy_9 chip0516_742665 PBMC +13389 CILPLAGGTSYGKLTF TRAV26-2*01 TRAJ52*01 HLA-B*08:01 B2M MHCI FLRGRAYGL EBNA3A EBV PMID:34811538 tetramer-sort yes amplicon-seq effector memory T cells healthy healthy_8 chip0516_737981 PBMC +13390 CAVKTDTNAGKSTF TRAV12-2*01 TRAJ27*01 CASSDSIGFNSPLHF TRBV6-4*01 TRBJ1-6*01 HLA-B*08:01 B2M MHCI FLRGRAYGL EBNA3A EBV PMID:34811538 tetramer-sort yes amplicon-seq effector memory T cells healthy healthy_8 chip0516_303717 PBMC +13391 CASTPTPGGELFF TRBV11-3*01 TRBJ2-2*01 HLA-A*02:01 B2M MHCI VVTGVLVYL ZNT8 HomoSapiens PMID:34811538 tetramer-sort yes amplicon-seq Naive T cells healthy healthy_7 chip0516_209158 PBMC +13392 CAVPKGgc?SASKIIF TRAV2*01 TRAJ3*01 HLA-B*08:01 B2M MHCI NLIFKWIL G6PC2 HomoSapiens PMID:34811538 tetramer-sort yes amplicon-seq Naive T cells healthy healthy_10 chip0516_810004 PBMC +13393 CILPLAGGTSYGKLTF TRAV26-2*01 TRAJ52*01 CASSLGQAYEQYF TRBV7-8*01 TRBJ2-7*01 HLA-B*08:01 B2M MHCI FLRGRAYGL EBNA3A EBV PMID:34811538 tetramer-sort yes amplicon-seq effector memory T cells healthy healthy_8 chip0516_734209 PBMC +13394 CASSGDGMNTEAFF TRBV10-2*01 TRBJ1-1*01 HLA-A*02:01 B2M MHCI CLGGLLTMV LMP2A EBV PMID:34811538 tetramer-sort yes amplicon-seq effector memory T cells healthy healthy_6 chip0516_618191 PBMC +13395 CASSQEIGNEQFF TRBV4-1*01 TRBJ2-1*01 HLA-B*08:01 B2M MHCI QAKWRLQTL EBNA3A EBV PMID:34811538 tetramer-sort yes amplicon-seq transitional T cells between effector and memory populations healthy healthy_9 chip0516_193776 PBMC +13396 CAMSASNFGNEKLTF TRAV12-3*01 TRAJ48*01 CASSSDTLIVDEQFF TRBV7-9*01 TRBJ2-1*01 HLA-A*02:01 B2M MHCI LLAGIGTVPI PGT HomoSapiens PMID:34811538 tetramer-sort yes amplicon-seq Naive T cells healthy healthy_7 chip0516_659890 PBMC +13398 CAPRALat?AARMLPF TRAV9-2*01 TRAJ39*01 HLA-B*08:01 B2M MHCI RAKFKQLL BZLF1 EBV PMID:34811538 tetramer-sort yes amplicon-seq Naive T cells healthy healthy_8 chip0516_71419 PBMC +13399 CAVALSSKSTF TRAV8-3*01 TRAJ27*01 CASSGDGMNTEAFF TRBV10-2*01 TRBJ1-1*01 HLA-A*02:01 B2M MHCI CLGGLLTMV LMP2A EBV PMID:34811538 tetramer-sort yes amplicon-seq effector memory T cells healthy healthy_6 chip0516_844357 PBMC +13400 CASSFSEWTGYTF TRBV5-4*01 TRBJ1-2*01 HLA-B*08:01 B2M MHCI MALWMRLL INS HomoSapiens PMID:34811538 tetramer-sort yes amplicon-seq Naive T cells healthy healthy_8 chip0516_54608 PBMC +13401 CAVKDTDKLIS TRAV8-1*01 TRAJ34*01 CASSQDYTWGNTEAFF TRBV14*01 TRBJ1-1*01 HLA-A*02:01 B2M MHCI YVLDHLIVV BRLF1 EBV PMID:34811538 tetramer-sort yes amplicon-seq transitional T cells between effector and memory populations healthy healthy_6 chip0516_553988 PBMC +13402 CILPLAGGTSYGKLTF TRAV26-2*01 TRAJ52*01 CASSLGQAYEQYF TRBV7-8*01 TRBJ2-7*01 HLA-B*08:01 B2M MHCI FLRGRAYGL EBNA3A EBV PMID:34811538 tetramer-sort yes amplicon-seq central memory T cells healthy healthy_8 chip0516_119980 PBMC +13403 CASSLGQAYEQYF TRBV7-8*01 TRBJ2-7*01 HLA-B*08:01 B2M MHCI FLRGRAYGL EBNA3A EBV PMID:34811538 tetramer-sort yes amplicon-seq effector memory T cells healthy healthy_8 chip0516_808343 PBMC +13404 CAVRNDYKLSF TRAV1-2*01 TRAJ20*01 CASTLGGQGRHEQFF TRBV27*01 TRBJ2-1*01 HLA-B*08:01 B2M MHCI RPIIRPATL NP InfluenzaA PMID:34811538 tetramer-sort yes amplicon-seq Naive T cells healthy healthy_8 chip0516_1802 PBMC +13405 CASSYETVNTEAFF TRBV4-3*01 TRBJ1-1*01 HLA-A*01:01 B2M MHCI LVSDGGPNLY PB1 InfluenzaA PMID:34811538 tetramer-sort yes amplicon-seq central memory T cells healthy healthy_8 chip0516_719260 PBMC +13406 CASSEWQGENTQYF TRBV6-1*01 TRBJ2-3*01 HLA-B*08:01 B2M MHCI QAKWRLQTL EBNA3A EBV PMID:34811538 tetramer-sort yes amplicon-seq Naive T cells healthy healthy_9 chip0516_325855 PBMC +13407 CAVISIct?GGFKTIF TRAV8-1*01 TRAJ9*01 HLA-A*02:01 B2M MHCI FLYALALLL LMP2 EBV PMID:34811538 tetramer-sort yes amplicon-seq central memory T cells healthy healthy_6 chip0516_614385 PBMC +13408 CAVRTSGFQKLVF TRAV12-2*01 TRAJ8*01 CASSLREFHETQYF TRBV6-1*01 TRBJ2-5*01 HLA-B*08:01 B2M MHCI FLRGRAYGL EBNA3A EBV PMID:34811538 tetramer-sort yes amplicon-seq transitional T cells between effector and memory populations healthy healthy_8 chip0516_733547 PBMC +13410 CASSGDGMNTEAFF TRBV10-2*01 TRBJ1-1*01 HLA-A*02:01 B2M MHCI CLGGLLTMV LMP2A EBV PMID:34811538 tetramer-sort yes amplicon-seq effector memory T cells healthy healthy_6 chip0516_114338 PBMC +13411 CASSPSNGAGGYTF TRBV4-1*01 TRBJ1-2*01 HLA-B*08:01 B2M MHCI RAKFKQLL BZLF1 EBV PMID:34811538 tetramer-sort yes amplicon-seq effector memory T cells healthy healthy_9 chip0516_750745 PBMC +13412 CARRPGGGGGYEQYF TRBV4-2*01 TRBJ2-7*01 HLA-A*02:01 B2M MHCI YLQQNWWTL LMP1 EBV PMID:34811538 tetramer-sort yes amplicon-seq central memory T cells healthy healthy_6 chip0516_219235 PBMC +13413 CAFKAGNQFYF TRAV24*01 TRAJ49*01 HLA-A*01:01 B2M MHCI HSNLNDATY NP InfluenzaA PMID:34811538 tetramer-sort yes amplicon-seq transitional T cells between effector and memory populations healthy healthy_8 chip0516_866071 PBMC +13414 CAVSRANFGNEKLTF TRAV21*01 TRAJ48*01 CASSIGSSEAFF TRBV19*01 TRBJ1-1*01 HLA-A*01:01 B2M MHCI ALDIEIATY GFAP HomoSapiens PMID:34811538 tetramer-sort yes amplicon-seq Naive T cells healthy healthy_8 chip0516_339349 PBMC +13415 CASSSGQAYEQYF TRBV7-8*01 TRBJ2-7*01 HLA-B*08:01 B2M MHCI FLRGRAYGL EBNA3A EBV PMID:34811538 tetramer-sort yes amplicon-seq effector memory T cells healthy healthy_8 chip0516_315548 PBMC +13416 CAASYGGSQGNLIF TRAV13-1*01 TRAJ42*01 CASSDSGGARDEQFF TRBV5-6*01 TRBJ2-1*01 HLA-B*08:01 B2M MHCI YAYAKWKL ZNT8 HomoSapiens PMID:34811538 tetramer-sort yes amplicon-seq transitional T cells between effector and memory populations healthy healthy_8 chip0516_738792 PBMC +13417 CAVALSSKSTF TRAV8-3*01 TRAJ27*01 CASSGDGMNTEAFF TRBV10-2*01 TRBJ1-1*01 HLA-A*02:01 B2M MHCI CLGGLLTMV LMP2A EBV PMID:34811538 tetramer-sort yes amplicon-seq effector memory T cells healthy healthy_6 chip0516_578494 PBMC +13418 CVVSPRMDSSYKLIF TRAV10*01 TRAJ12*01 HLA-B*08:01 B2M MHCI FLRGRAYGL EBNA3A EBV PMID:34811538 tetramer-sort yes amplicon-seq central memory T cells healthy healthy_8 chip0516_391166 PBMC +13419 CAASANAGDNRVLFW TRAV29/DV5*01 TRAJ38*01 HLA-B*08:01 B2M MHCI YAYAKWKL ZNT8 HomoSapiens PMID:34811538 tetramer-sort yes amplicon-seq Naive T cells healthy healthy_8 chip0516_241328 PBMC +13421 CPVLWga??acNRLVF TRAV4*01 TRAJ7*01 CASSYAETQYF TRBV28*01 TRBJ2-5*01 HLA-A*02:01 B2M MHCI ALAGIGILTV MART1 HomoSapiens PMID:34811538 tetramer-sort yes amplicon-seq Naive T cells healthy healthy_6 chip0516_126168 PBMC +13422 CASSMFGGNEQFF TRBV19*01 TRBJ2-1*01 HLA-A*02:01 B2M MHCI GILGFVFTL M1 InfluenzaA PMID:34811538 tetramer-sort yes amplicon-seq Naive T cells healthy healthy_7 chip0516_221963 PBMC +13423 CAVDDQSSNTGKLIF TRAV2*01 TRAJ37*01 CASSPRGGQIDTQYF TRBV5-1*01 TRBJ2-3*01 HLA-B*08:01 B2M MHCI RVKEKYQHL gp160 HIV-1 PMID:34811538 tetramer-sort yes amplicon-seq Naive T cells healthy healthy_8 chip0516_347164 PBMC +13424 CILPLAGGTSSGKLTF TRAV26-2*01 TRAJ52*01 CASSLGQAYEQYF TRBV7-8*01 TRBJ2-7*01 HLA-B*08:01 B2M MHCI FLRGRAYGL EBNA3A EBV PMID:34811538 tetramer-sort yes amplicon-seq effector memory T cells healthy healthy_8 chip0516_256315 PBMC +13425 CAASDGANSKLTF TRAV29/DV5*01 TRAJ56*01 HLA-A*01:01 B2M MHCI PTEKGANEY ZNT8 HomoSapiens PMID:34811538 tetramer-sort yes amplicon-seq Naive T cells healthy healthy_8 chip0516_29034 PBMC +13426 CAFRDDKIIF TRAV24*01 TRAJ30*01 HLA-B*08:01 B2M MHCI RPIIRPATL NP InfluenzaA PMID:34811538 tetramer-sort yes amplicon-seq transitional T cells between effector and memory populations healthy healthy_8 chip0516_754407 PBMC +13428 CATEGASGYSTLTF TRAV17*01 TRAJ11*01 HLA-A*02:01 B2M MHCI FLYALALLL LMP2 EBV PMID:34811538 tetramer-sort yes amplicon-seq effector memory T cells healthy healthy_6 chip0516_556038 PBMC +13429 CAVQGTTDSWGKLQF TRAV20*01 TRAJ24*01 CSASPSRGTSSGNTIYF TRBV20-1*01 TRBJ1-3*01 HLA-B*08:01 B2M MHCI YVMVTAAL G6PC2 HomoSapiens PMID:34811538 tetramer-sort yes amplicon-seq transitional T cells between effector and memory populations healthy healthy_8 chip0516_228884 PBMC +13430 CDSSSFSSPSTDTQYF TRBV7-8*01 TRBJ2-3*01 HLA-B*08:01 B2M MHCI MMIARFKM GAD2 HomoSapiens PMID:34811538 tetramer-sort yes amplicon-seq Naive T cells healthy healthy_8 chip0516_156906 PBMC +13431 CAVALSSKSTF TRAV8-3*01 TRAJ27*01 CASSGDGMNTEAFF TRBV10-2*01 TRBJ1-1*01 HLA-A*02:01 B2M MHCI CLGGLLTMV LMP2A EBV PMID:34811538 tetramer-sort yes amplicon-seq effector memory T cells healthy healthy_6 chip0516_280724 PBMC +13432 CAMREGDNYGQNFVF TRAV14/DV4*01 TRAJ26*01 CASSPTPNLGSNQPQHF TRBV5-4*01 TRBJ1-5*01 HLA-B*08:01 B2M MHCI GPKVKQWPL Pol HIV-1 PMID:34811538 tetramer-sort yes amplicon-seq Naive T cells healthy healthy_8 chip0516_448865 PBMC +13434 CILPLAGGTSYGKLTF TRAV26-2*01 TRAJ52*01 CASSLGQAYEQYF TRBV7-8*01 TRBJ2-7*01 HLA-B*08:01 B2M MHCI FLRGRAYGL EBNA3A EBV PMID:34811538 tetramer-sort yes amplicon-seq effector memory T cells healthy healthy_8 chip0516_18024 PBMC +13437 CASSLALPSGANVLTF TRBV5-1*01 TRBJ2-6*01 HLA-B*08:01 B2M MHCI YAYAKWKL ZNT8 HomoSapiens PMID:34811538 tetramer-sort yes amplicon-seq Naive T cells healthy healthy_8 chip0516_458019 PBMC +13438 CILPLAGGTSYGKLTF TRAV26-2*01 TRAJ52*01 CASSLGQAYEQYF TRBV7-8*01 TRBJ2-7*01 HLA-B*08:01 B2M MHCI FLRGRAYGL EBNA3A EBV PMID:34811538 tetramer-sort yes amplicon-seq effector memory T cells healthy healthy_8 chip0516_248147 PBMC +13439 CILPLAGGTSYGKLTF TRAV26-2*01 TRAJ52*01 CASSSGQAYEQYF TRBV7-8*01 TRBJ2-7*01 HLA-B*08:01 B2M MHCI FLRGRAYGL EBNA3A EBV PMID:34811538 tetramer-sort yes amplicon-seq effector memory T cells healthy healthy_8 chip0516_498652 PBMC +13440 CAVALSSKSTF TRAV8-3*01 TRAJ27*01 CASSGDGMNTEAFF TRBV10-2*01 TRBJ1-1*01 HLA-A*02:01 B2M MHCI CLGGLLTMV LMP2A EBV PMID:34811538 tetramer-sort yes amplicon-seq effector memory T cells healthy healthy_6 chip0516_711535 PBMC +13442 CAVAPct??caSKSTF TRAV8-3*01 TRAJ27*01 HLA-A*02:01 B2M MHCI CLGGLLTMV LMP2A EBV PMID:34811538 tetramer-sort yes amplicon-seq effector memory T cells healthy healthy_6 chip0516_195963 PBMC +13444 CASSGDGMNTEAFF TRBV10-2*01 TRBJ1-1*01 HLA-A*02:01 B2M MHCI CLGGLLTMV LMP2A EBV PMID:34811538 tetramer-sort yes amplicon-seq effector memory T cells healthy healthy_6 chip0516_314559 PBMC +13445 CAMSPSNFGNEKLTF TRAV12-3*01 TRAJ48*01 LCL*CSGTgg??ggAAGNTIYF TRBV19*01 TRBJ1-3*01 HLA-A*02:01 B2M MHCI LLAGIGTVPI PGT HomoSapiens PMID:34811538 tetramer-sort yes amplicon-seq Naive T cells healthy healthy_7 chip0516_468715 PBMC +13447 CAVALSSKSTF TRAV8-3*01 TRAJ27*01 HLA-A*02:01 B2M MHCI CLGGLLTMV LMP2A EBV PMID:34811538 tetramer-sort yes amplicon-seq effector memory T cells healthy healthy_6 chip0516_201296 PBMC +13448 CASSGDGMNTEAFF TRBV10-2*01 TRBJ1-1*01 HLA-A*02:01 B2M MHCI CLGGLLTMV LMP2A EBV PMID:34811538 tetramer-sort yes amplicon-seq effector memory T cells healthy healthy_6 chip0516_649702 PBMC +13449 CASSPGPRNTGELFF TRBV6-1*01 TRBJ2-2*01 HLA-B*08:01 B2M MHCI MMIARFKM GAD2 HomoSapiens PMID:34811538 tetramer-sort yes amplicon-seq effector memory T cells healthy healthy_9 chip0516_861399 PBMC +13450 SILPLAGFASYVNLTF TRAV26-2*01 TRAJ52*01 CASSLGQAYEQYF TRBV7-8*01 TRBJ2-7*01 HLA-B*08:01 B2M MHCI FLRGRAYGL EBNA3A EBV PMID:34811538 tetramer-sort yes amplicon-seq central memory T cells healthy healthy_8 chip0516_196620 PBMC +13451 CAVSNQGGKLIF TRAV20*01 TRAJ23*01 CASSLGGGELFF TRBV7-9*01 TRBJ2-2*01 HLA-B*08:01 B2M MHCI FLRGRAYGL EBNA3A EBV PMID:34811538 tetramer-sort yes amplicon-seq Naive T cells healthy healthy_9 chip0516_619415 PBMC +13452 CAASSGYSTLTF TRAV12-2*01 TRAJ11*01 CASGSLAGAQETQYF TRBV27*01 TRBJ2-5*01 HLA-A*02:01 B2M MHCI LLAGIGTVPI PGT HomoSapiens PMID:34811538 tetramer-sort yes amplicon-seq Naive T cells healthy healthy_7 chip0516_798940 PBMC +13453 CASSGDGMNTEAFF TRBV10-2*01 TRBJ1-1*01 HLA-A*02:01 B2M MHCI CLGGLLTMV LMP2A EBV PMID:34811538 tetramer-sort yes amplicon-seq effector memory T cells healthy healthy_6 chip0516_104280 PBMC +13454 CASSLQSGTEAFF TRBV7-9*01 TRBJ1-1*01 HLA-B*08:01 B2M MHCI AAKMYAFTL ZNT8 HomoSapiens PMID:34811538 tetramer-sort yes amplicon-seq Naive T cells healthy healthy_8 chip0516_610179 PBMC +13455 CATDDYDMRF TRAV17*01 TRAJ43*01 CASSRGGYNEQFF TRBV9*01 TRBJ2-1*01 HLA-B*08:01 B2M MHCI NTYGKRNAV IAPP HomoSapiens PMID:34811538 tetramer-sort yes amplicon-seq Naive T cells healthy healthy_8 chip0516_326660 PBMC +13456 CILPLAGGTSDGKLTF TRAV26-2*01 TRAJ52*01 CASSLGQAYEQYF TRBV7-8*01 TRBJ2-7*01 HLA-B*08:01 B2M MHCI FLRGRAYGL EBNA3A EBV PMID:34811538 tetramer-sort yes amplicon-seq effector T cells healthy healthy_8 chip0516_226027 PBMC +13457 CASSLGQAYEQYF TRBV7-8*01 TRBJ2-7*01 HLA-B*08:01 B2M MHCI FLRGRAYGL EBNA3A EBV PMID:34811538 tetramer-sort yes amplicon-seq effector memory T cells healthy healthy_8 chip0516_595530 PBMC +13458 CILPLAGGTSYGKLTF TRAV26-2*01 TRAJ52*01 HLA-B*08:01 B2M MHCI FLRGRAYGL EBNA3A EBV PMID:34811538 tetramer-sort yes amplicon-seq effector memory T cells healthy healthy_8 chip0516_632294 PBMC +13460 CAVALSSKSPF TRAV8-3*01 TRAJ27*01 HLA-A*02:01 B2M MHCI CLGGLLTMV LMP2A EBV PMID:34811538 tetramer-sort yes amplicon-seq effector memory T cells healthy healthy_6 chip0516_798488 PBMC +13461 CASSILSQDEQFF TRBV19*01 TRBJ2-1*01 HLA-A*02:01 B2M MHCI GILGFVFTL M1 InfluenzaA PMID:34811538 tetramer-sort yes amplicon-seq transitional T cells between effector and memory populations healthy healthy_7 chip0516_692979 PBMC +13463 CAVALSSKSTF TRAV8-3*01 TRAJ27*01 CASSGDGMNTEAFF TRBV10-2*01 TRBJ1-1*01 HLA-A*02:01 B2M MHCI CLGGLLTMV LMP2A EBV PMID:34811538 tetramer-sort yes amplicon-seq effector T cells healthy healthy_6 chip0516_494008 PBMC +13464 CAVALSSKSTF TRAV8-3*01 TRAJ27*01 HLA-A*02:01 B2M MHCI CLGGLLTMV LMP2A EBV PMID:34811538 tetramer-sort yes amplicon-seq effector T cells healthy healthy_6 chip0516_262213 PBMC +13465 CAMGALGAGKSTF TRAV8-3*01 TRAJ27*01 CASPPEV??gRPGELFF TRBV19*01 TRBJ2-2*01 HLA-A*01:01 B2M MHCI CTELKLSDY NP InfluenzaA PMID:34811538 tetramer-sort yes amplicon-seq Naive T cells healthy healthy_8 chip0516_579870 PBMC +13466 CAVALSSKSTF TRAV8-3*01 TRAJ27*01 CASSGDGMNTEAFF TRBV10-2*01 TRBJ1-1*01 HLA-A*02:01 B2M MHCI CLGGLLTMV LMP2A EBV PMID:34811538 tetramer-sort yes amplicon-seq effector memory T cells healthy healthy_6 chip0516_270713 PBMC +13467 CAVALSSKSTF TRAV8-3*01 TRAJ27*01 HLA-A*02:01 B2M MHCI CLGGLLTMV LMP2A EBV PMID:34811538 tetramer-sort yes amplicon-seq effector memory T cells healthy healthy_6 chip0516_120723 PBMC +13471 CAAPARAATRTLTF TRAV25*01 TRAJ56*01 CASWPTRSGNEQFF TRBV2*01 TRBJ2-1*01 HLA-A*02:01 B2M MHCI LLPPLLEHL PTPRN HomoSapiens PMID:34811538 tetramer-sort yes amplicon-seq Naive T cells healthy healthy_7 chip0516_791795 PBMC +13473 CASSRALEGNTIYF TRBV7-9*01 TRBJ1-3*01 HLA-B*08:01 B2M MHCI CPLSKILL LMP2A EBV PMID:34811538 tetramer-sort yes amplicon-seq Naive T cells healthy healthy_9 chip0516_177791 PBMC +13474 CILPLAGGTSYGKLTF TRAV26-2*01 TRAJ52*01 CASSLGQAYEQYF TRBV7-8*01 TRBJ2-7*01 HLA-B*08:01 B2M MHCI FLRGRAYGL EBNA3A EBV PMID:34811538 tetramer-sort yes amplicon-seq effector memory T cells healthy healthy_8 chip0516_443151 PBMC +13475 CASSSGQGDNEQFF TRBV11-3*01 TRBJ2-1*01 HLA-A*02:01 B2M MHCI GLCTLVAML BLMF1 EBV PMID:34811538 tetramer-sort yes amplicon-seq effector T cells healthy healthy_6 chip0516_726718 PBMC +13476 CASSGDGMNTEAFF TRBV10-2*01 TRBJ1-1*01 HLA-A*02:01 B2M MHCI CLGGLLTMV LMP2A EBV PMID:34811538 tetramer-sort yes amplicon-seq effector memory T cells healthy healthy_6 chip0516_865478 PBMC +13477 CASSSRLAGAFNEQFF TRBV27*01 TRBJ2-1*01 HLA-A*02:01 B2M MHCI LLAGIGTVPI PGT HomoSapiens PMID:34811538 tetramer-sort yes amplicon-seq transitional T cells between effector and memory populations healthy healthy_7 chip0516_504611 PBMC +13478 CAVGEGFQKLVF TRAV12-2*01 TRAJ8*01 HLA-A*02:01 B2M MHCI ALAGIGILTV MART1 HomoSapiens PMID:34811538 tetramer-sort yes amplicon-seq Naive T cells healthy healthy_6 chip0516_56993 PBMC +13480 CAVALSSKSTF TRAV8-3*01 TRAJ27*01 HLA-A*02:01 B2M MHCI CLGGLLTMV LMP2A EBV PMID:34811538 tetramer-sort yes amplicon-seq effector memory T cells healthy healthy_6 chip0516_647550 PBMC +13481 CASMIDPASGKGEYF TRBV5-5*01 TRBJ2-3*01 HLA-B*08:01 B2M MHCI QAKWRLQTL EBNA3A EBV PMID:34811538 tetramer-sort yes amplicon-seq Naive T cells healthy healthy_9 chip0516_677299 PBMC +13482 CASSGDGMNTEAFF TRBV10-2*01 TRBJ1-1*01 HLA-A*02:01 B2M MHCI CLGGLLTMV LMP2A EBV PMID:34811538 tetramer-sort yes amplicon-seq effector memory T cells healthy healthy_6 chip0516_175790 PBMC +13485 CASSYGTGLLNEQFF TRBV7-3*01 TRBJ2-1*01 HLA-B*08:01 B2M MHCI RAKFKQLL BZLF1 EBV PMID:34811538 tetramer-sort yes amplicon-seq effector T cells healthy healthy_8 chip0516_646034 PBMC +13486 CAVGACAGGFTTIF TRAV8-1*01 TRAJ9*01 CASSSFGVGAFF TRBV5-1*01 TRBJ1-1*01 HLA-B*08:01 B2M MHCI YAKWKLCSA ZNT8 HomoSapiens PMID:34811538 tetramer-sort yes amplicon-seq Naive T cells healthy healthy_8 chip0516_645557 PBMC +13487 CILPLAGGTSYGKLTF TRAV26-2*01 TRAJ52*01 CASTISRGGYAF TRBV12-3*01,TRBV12-4*01 TRBJ1-2*01 HLA-B*08:01 B2M MHCI FLRGRAYGL EBNA3A EBV PMID:34811538 tetramer-sort yes amplicon-seq transitional T cells between effector and memory populations healthy healthy_8 chip0516_705477 PBMC +13489 CASSGDGMNTEAFF TRBV10-2*01 TRBJ1-1*01 HLA-A*02:01 B2M MHCI CLGGLLTMV LMP2A EBV PMID:34811538 tetramer-sort yes amplicon-seq effector memory T cells healthy healthy_6 chip0516_544894 PBMC +13490 CASSLGQAYEQYF TRBV7-8*01 TRBJ2-7*01 HLA-B*08:01 B2M MHCI FLRGRAYGL EBNA3A EBV PMID:34811538 tetramer-sort yes amplicon-seq effector T cells healthy healthy_8 chip0516_299410 PBMC +13491 CAVKTDTNAGKSTF TRAV12-2*01 TRAJ27*01 HLA-B*08:01 B2M MHCI FLRGRAYGL EBNA3A EBV PMID:34811538 tetramer-sort yes amplicon-seq effector memory T cells healthy healthy_8 chip0516_46338 PBMC +13492 CASSGDGMNTEAFF TRBV10-2*01 TRBJ1-1*01 HLA-A*02:01 B2M MHCI CLGGLLTMV LMP2A EBV PMID:34811538 tetramer-sort yes amplicon-seq effector memory T cells healthy healthy_6 chip0516_706514 PBMC +13494 CAVKTDTNAGKSTF TRAV12-2*01 TRAJ27*01 HLA-B*08:01 B2M MHCI FLRGRAYGL EBNA3A EBV PMID:34811538 tetramer-sort yes amplicon-seq effector T cells healthy healthy_8 chip0516_251524 PBMC +13495 CASSRLGLQETQYF TRBV27*01 TRBJ2-5*01 HLA-A*01:01 B2M MHCI STNVGSNTY IAPP HomoSapiens PMID:34811538 tetramer-sort yes amplicon-seq Naive T cells healthy healthy_9 chip0516_217580 PBMC +13496 CASSGDGMNTEAFF TRBV10-2*01 TRBJ1-1*01 HLA-A*02:01 B2M MHCI CLGGLLTMV LMP2A EBV PMID:34811538 tetramer-sort yes amplicon-seq effector memory T cells healthy healthy_6 chip0516_576250 PBMC +13498 CATSDRSATEAFF TRBV24-1*01 TRBJ1-1*01 HLA-A*02:01 B2M MHCI ALAGIGILTV MART1 HomoSapiens PMID:34811538 tetramer-sort yes amplicon-seq Naive T cells healthy healthy_7 chip0516_491457 PBMC +13500 LSGNQFYF TRAV13-1*01 TRAJ49*01 HLA-A*02:01 B2M MHCI GILGFVFTL M1 InfluenzaA PMID:34811538 tetramer-sort yes amplicon-seq transitional T cells between effector and memory populations healthy healthy_7 chip0516_326473 PBMC +13501 CASSLTGPGDQPQHF TRBV7-9*01 TRBJ1-5*01 HLA-B*08:01 B2M MHCI RAKFKQLL BZLF1 EBV PMID:34811538 tetramer-sort yes amplicon-seq transitional T cells between effector and memory populations healthy healthy_8 chip0516_838618 PBMC +13502 CILPLAGGTSYGKLTF TRAV26-2*01 TRAJ52*01 HLA-B*08:01 B2M MHCI FLRGRAYGL EBNA3A EBV PMID:34811538 tetramer-sort yes amplicon-seq transitional T cells between effector and memory populations healthy healthy_8 chip0516_312518 PBMC +13503 RAVNALYSGGGADGRTF TRAV8-1*01 TRAJ45*01 CAISESGGGGFREQFF TRBV10-3*01 TRBJ2-1*01 HLA-B*08:01 B2M MHCI QAKWRLQTL EBNA3A EBV PMID:34811538 tetramer-sort yes amplicon-seq Naive T cells healthy healthy_8 chip0516_204526 PBMC +13504 CALALSSK*TF TRAV8-3*01 TRAJ27*01 HLA-A*02:01 B2M MHCI CLGGLLTMV LMP2A EBV PMID:34811538 tetramer-sort yes amplicon-seq effector memory T cells healthy healthy_6 chip0516_33953 PBMC +13506 CILPLAGGTSYGKLTF TRAV26-2*01 TRAJ52*01 CASSLGQAYEQYF TRBV7-8*01 TRBJ2-7*01 HLA-B*08:01 B2M MHCI FLRGRAYGL EBNA3A EBV PMID:34811538 tetramer-sort yes amplicon-seq effector memory T cells healthy healthy_8 chip0516_410833 PBMC +13507 CAVE*Ega??acDYKLSF TRAV8-3*01 TRAJ20*01 HLA-B*08:01 B2M MHCI RAKFKQLL BZLF1 EBV PMID:34811538 tetramer-sort yes amplicon-seq Naive T cells healthy healthy_8 chip0516_98771 PBMC +13508 YILPLAGGTSYGKLTF TRAV26-2*01 TRAJ52*01 CASNLGQAYEQYF TRBV7-8*01 TRBJ2-7*01 HLA-B*08:01 B2M MHCI FLRGRAYGL EBNA3A EBV PMID:34811538 tetramer-sort yes amplicon-seq central memory T cells healthy healthy_8 chip0516_205100 PBMC +13509 CAYQDGANVLTF TRBV10-3*01 TRBJ2-6*01 HLA-A*01:01 B2M MHCI CTELKLSDY NP InfluenzaA PMID:34811538 tetramer-sort yes amplicon-seq central memory T cells healthy healthy_8 chip0516_496211 PBMC +13510 CAVALSSKSTF TRAV8-3*01 TRAJ27*01 CASSGDGMNTEAFF TRBV10-2*01 TRBJ1-1*01 HLA-A*02:01 B2M MHCI CLGGLLTMV LMP2A EBV PMID:34811538 tetramer-sort yes amplicon-seq effector memory T cells healthy healthy_6 chip0516_427264 PBMC +13511 CSARAPFDag??ggGSTDTQYF TRBV20-1*01 TRBJ2-3*01 HLA-B*08:01 B2M MHCI QAKWRLQTL EBNA3A EBV PMID:34811538 tetramer-sort yes amplicon-seq Naive T cells healthy healthy_9 chip0516_105778 PBMC +13512 CALSEGcc??ggHARLMF TRAV19*01 TRAJ31*01 HLA-A*02:01 B2M MHCI YVLDHLIVV BRLF1 EBV PMID:34811538 tetramer-sort yes amplicon-seq central memory T cells healthy healthy_6 chip0516_216071 PBMC +13513 CASSGDGMNTEAFF TRBV10-2*01 TRBJ1-1*01 HLA-A*02:01 B2M MHCI CLGGLLTMV LMP2A EBV PMID:34811538 tetramer-sort yes amplicon-seq effector memory T cells healthy healthy_6 chip0516_765329 PBMC +13514 CAVKGGKTYNTDKLIF TRAV12-2*01 TRAJ34*01 HLA-A*02:01 B2M MHCI GILGFVFTL M1 InfluenzaA PMID:34811538 tetramer-sort yes amplicon-seq effector T cells healthy healthy_6 chip0516_748232 PBMC +13516 CSATRADKNIQYF TRBV20-1*01 TRBJ2-4*01 HLA-A*02:01 B2M MHCI CLGGLLTMV LMP2A EBV PMID:34811538 tetramer-sort yes amplicon-seq Naive T cells healthy healthy_7 chip0516_375303 PBMC +13517 CALSKAga?GAYKLSF TRAV19*01 TRAJ20*01 CASSIQQGQPQHF TRBV19*01 TRBJ1-5*01 HLA-B*08:01 B2M MHCI ELRSRYWAI NP InfluenzaA PMID:34811538 tetramer-sort yes amplicon-seq transitional T cells between effector and memory populations healthy healthy_8 chip0516_597043 PBMC +13523 CILPLAGGTSYGKLTF TRAV26-2*01 TRAJ52*01 CASSLGQAYEQYF TRBV7-8*01 TRBJ2-7*01 HLA-B*08:01 B2M MHCI FLRGRAYGL EBNA3A EBV PMID:34811538 tetramer-sort yes amplicon-seq effector memory T cells healthy healthy_8 chip0516_655201 PBMC +13526 CAVALSSKSTF TRAV8-3*01 TRAJ27*01 CASSGDGMNTEAFF TRBV10-2*01 TRBJ1-1*01 HLA-A*02:01 B2M MHCI CLGGLLTMV LMP2A EBV PMID:34811538 tetramer-sort yes amplicon-seq effector memory T cells healthy healthy_6 chip0516_331651 PBMC +13529 CAVTGDYKLSF TRAV12-2*01 TRAJ20*01 CSAPPTSGSFNEQFF TRBV20-1*01 TRBJ2-1*01 HLA-A*02:01 B2M MHCI LLAGIGTVPI PGT HomoSapiens PMID:34811538 tetramer-sort yes amplicon-seq Naive T cells healthy healthy_7 chip0516_424349 PBMC +13530 CASSLGQAYEQYF TRBV7-8*01 TRBJ2-7*01 HLA-B*08:01 B2M MHCI FLRGRAYGL EBNA3A EBV PMID:34811538 tetramer-sort yes amplicon-seq effector memory T cells healthy healthy_8 chip0516_39204 PBMC +13532 CAVALSSKSTF TRAV8-3*01 TRAJ27*01 HLA-A*02:01 B2M MHCI CLGGLLTMV LMP2A EBV PMID:34811538 tetramer-sort yes amplicon-seq effector memory T cells healthy healthy_6 chip0516_788269 PBMC +13533 CAATGANNLFF TRAV13-1*01 TRAJ36*01 HLA-B*08:01 B2M MHCI GPKVKQWPL Pol HIV-1 PMID:34811538 tetramer-sort yes amplicon-seq Naive T cells healthy healthy_8 chip0516_713812 PBMC +13534 CAASLMEg?aSQGNLIF TRAV2*01 TRAJ42*01 HLA-A*02:01 B2M MHCI LLAGIGTVPI PGT HomoSapiens PMID:34811538 tetramer-sort yes amplicon-seq effector memory T cells healthy healthy_6 chip0516_729827 PBMC +13535 CASSLGQAYEQYF TRBV7-8*01 TRBJ2-7*01 HLA-B*08:01 B2M MHCI FLRGRAYGL EBNA3A EBV PMID:34811538 tetramer-sort yes amplicon-seq effector memory T cells healthy healthy_8 chip0516_78447 PBMC +13536 CAMSATGANSKLTF TRAV12-3*01 TRAJ56*01 HLA-A*02:01 B2M MHCI LLSLFSLWL ZNT8 HomoSapiens PMID:34811538 tetramer-sort yes amplicon-seq transitional T cells between effector and memory populations healthy healthy_6 chip0516_9481 PBMC +13537 CAVSSVF??cDGQQLLF TRAV8-4*01 TRAJ16*01 CAGSDVLMAGLRHTEAFF TRBV6-4*01 TRBJ1-1*01 HLA-B*08:01 B2M MHCI RPIIRPATL NP InfluenzaA PMID:34811538 tetramer-sort yes amplicon-seq transitional T cells between effector and memory populations healthy healthy_8 chip0516_573969 PBMC +13538 CATSDLTGGHNEQFF TRBV24-1*01 TRBJ2-1*01 HLA-A*01:01 B2M MHCI HSNLNDATY NP InfluenzaA PMID:34811538 tetramer-sort yes amplicon-seq Naive T cells healthy healthy_9 chip0516_773763 PBMC +13539 CAMGRRga?SQGNLIF TRAV12-3*01 TRAJ42*01 CASSFGGTEAFF TRBV7-2*01 TRBJ1-1*01 HLA-A*02:01 B2M MHCI LLAGIGTVPI PGT HomoSapiens PMID:34811538 tetramer-sort yes amplicon-seq Naive T cells healthy healthy_7 chip0516_562979 PBMC +13540 CALYYTSGTYKYIF TRAV19*01 TRAJ40*01 CASSLGTGGYEQYF TRBV7-6*01 TRBJ2-7*01 HLA-B*08:01 B2M MHCI ALKCKGFHV NP InfluenzaA PMID:34811538 tetramer-sort yes amplicon-seq Naive T cells healthy healthy_8 chip0516_698410 PBMC +13541 CASSLGQAYEQYF TRBV7-8*01 TRBJ2-7*01 HLA-B*08:01 B2M MHCI FLRGRAYGL EBNA3A EBV PMID:34811538 tetramer-sort yes amplicon-seq transitional T cells between effector and memory populations healthy healthy_8 chip0516_282481 PBMC +13542 CAMREGGSNYQLIW TRAV14/DV4*01 TRAJ33*01 HLA-B*08:01 B2M MHCI RPIIRPATL NP InfluenzaA PMID:34811538 tetramer-sort yes amplicon-seq transitional T cells between effector and memory populations healthy healthy_9 chip0516_6566 PBMC +13543 CILPLAGGTSYGKLTF TRAV26-2*01 TRAJ52*01 HLA-B*08:01 B2M MHCI FLRGRAYGL EBNA3A EBV PMID:34811538 tetramer-sort yes amplicon-seq effector memory T cells healthy healthy_8 chip0516_583663 PBMC +13544 CILPLAGGTSYGKLTF TRAV26-2*01 TRAJ52*01 CASSSGQAYEQYF TRBV7-8*01 TRBJ2-7*01 HLA-B*08:01 B2M MHCI FLRGRAYGL EBNA3A EBV PMID:34811538 tetramer-sort yes amplicon-seq effector T cells healthy healthy_8 chip0516_679937 PBMC +13546 CAMKDDYKLSF TRAV14/DV4*01 TRAJ20*01 CASSQFPPCSRARIFEAEAFF TRBV4-3*01 TRBJ1-1*01 HLA-A*02:01 B2M MHCI LLAGIGTVPI PGT HomoSapiens PMID:34811538 tetramer-sort yes amplicon-seq Naive T cells healthy healthy_7 chip0516_13505 PBMC +13547 CASSGDGMNTEAFF TRBV10-2*01 TRBJ1-1*01 HLA-A*02:01 B2M MHCI CLGGLLTMV LMP2A EBV PMID:34811538 tetramer-sort yes amplicon-seq effector memory T cells healthy healthy_6 chip0516_598935 PBMC +13548 CILPLAGGTSYGKLTF TRAV26-2*01 TRAJ52*01 CASSLGQAYEQYF TRBV7-8*01 TRBJ2-7*01 HLA-B*08:01 B2M MHCI FLRGRAYGL EBNA3A EBV PMID:34811538 tetramer-sort yes amplicon-seq effector memory T cells healthy healthy_8 chip0516_257823 PBMC +13549 CAVLMDSNYQLIW TRAV12-3*01 TRAJ33*01 HLA-A*02:01 B2M MHCI CLGGLLTMV LMP2A EBV PMID:34811538 tetramer-sort yes amplicon-seq effector memory T cells healthy healthy_6 chip0516_16430 PBMC +13550 CAVDNNDMRF TRAV21*01 TRAJ43*01 CASSLARGGNQPQHF TRBV12-3*01,TRBV12-4*01 TRBJ1-5*01 HLA-A*01:01 B2M MHCI STNVGSNTY IAPP HomoSapiens PMID:34811538 tetramer-sort yes amplicon-seq Naive T cells healthy healthy_8 chip0516_470684 PBMC +13551 CAVKGDTNAGKSTF TRAV12-2*01 TRAJ27*01 HLA-B*08:01 B2M MHCI FLRGRAYGL EBNA3A EBV PMID:34811538 tetramer-sort yes amplicon-seq central memory T cells healthy healthy_8 chip0516_672041 PBMC +13552 CASSLGQAYEQYF TRBV7-8*01 TRBJ2-7*01 HLA-B*08:01 B2M MHCI FLRGRAYGL EBNA3A EBV PMID:34811538 tetramer-sort yes amplicon-seq effector memory T cells healthy healthy_8 chip0516_627820 PBMC +13554 CASSSGQAYEQYF TRBV7-8*01 TRBJ2-7*01 HLA-B*08:01 B2M MHCI FLRGRAYGL EBNA3A EBV PMID:34811538 tetramer-sort yes amplicon-seq effector memory T cells healthy healthy_8 chip0516_201546 PBMC +13555 CASKGGPHNEQFF TRBV12-3*01,TRBV12-4*01 TRBJ2-1*01 HLA-B*08:01 B2M MHCI MALWMRLL INS HomoSapiens PMID:34811538 tetramer-sort yes amplicon-seq Naive T cells healthy healthy_9 chip0516_706579 PBMC +13556 CAVNGGGTALIF TRAV12-2*01 TRAJ15*01 CASSVGAGEQFF TRBV9*01 TRBJ2-1*01 HLA-A*02:01 B2M MHCI ALAGIGILTV MART1 HomoSapiens PMID:34811538 tetramer-sort yes amplicon-seq Naive T cells healthy healthy_7 chip0516_117024 PBMC +13557 CASSGDGMNTEAFF TRBV10-2*01 TRBJ1-1*01 HLA-A*02:01 B2M MHCI CLGGLLTMV LMP2A EBV PMID:34811538 tetramer-sort yes amplicon-seq effector memory T cells healthy healthy_6 chip0516_869456 PBMC +13558 CAENAFYNTDKLIF TRAV13-2*01 TRAJ34*01 HLA-B*08:01 B2M MHCI RPIIRPATL NP InfluenzaA PMID:34811538 tetramer-sort yes amplicon-seq Naive T cells healthy healthy_9 chip0516_724105 PBMC +13559 CAMREGQNAGNMLTF TRAV14/DV4*01 TRAJ39*01 HLA-B*08:01 B2M MHCI RPIIRPATL NP InfluenzaA PMID:34811538 tetramer-sort yes amplicon-seq Naive T cells healthy healthy_9 chip0516_471554 PBMC +13562 CASSLGQAYEQYF TRBV7-8*01 TRBJ2-7*01 HLA-B*08:01 B2M MHCI FLRGRAYGL EBNA3A EBV PMID:34811538 tetramer-sort yes amplicon-seq effector T cells healthy healthy_8 chip0516_797262 PBMC +13565 CAVALSSKSTF TRAV8-3*01 TRAJ27*01 HLA-A*02:01 B2M MHCI CLGGLLTMV LMP2A EBV PMID:34811538 tetramer-sort yes amplicon-seq effector memory T cells healthy healthy_6 chip0516_191981 PBMC +13566 CGSGGSNYKLTF TRAV30*01 TRAJ53*01 CSAGQDTTRVGDEQFF TRBV20-1*01 TRBJ2-1*01 HLA-B*08:01 B2M MHCI NLIFKWIL G6PC2 HomoSapiens PMID:34811538 tetramer-sort yes amplicon-seq Naive T cells healthy healthy_8 chip0516_132362 PBMC +13567 CASSYRGLDKQYF TRBV5-4*01 TRBJ2-7*01 HLA-B*08:01 B2M MHCI YAKWKLCSA ZNT8 HomoSapiens PMID:34811538 tetramer-sort yes amplicon-seq Naive T cells healthy healthy_9 chip0516_370720 PBMC +13568 CAASIREac??ggGGNKLTF TRAV13-1*01 TRAJ10*01 CARSLRQGLQTQYF TRBV28*01 TRBJ2-5*01 HLA-A*02:01 B2M MHCI LLAGIGTVPI PGT HomoSapiens PMID:34811538 tetramer-sort yes amplicon-seq Naive T cells healthy healthy_7 chip0516_356352 PBMC +13569 CAAFNYQLIW TRAV13-1*01 TRAJ33*01 CASSYGQGNEQFF TRBV7-3*01 TRBJ2-1*01 HLA-B*08:01 B2M MHCI RAKFKQLL BZLF1 EBV PMID:34811538 tetramer-sort yes amplicon-seq Naive T cells healthy healthy_9 chip0516_749785 PBMC +13571 CASRQYDRDTGELFF TRBV27*01 TRBJ2-2*01 HLA-A*02:01 B2M MHCI VMNILLQYV GAD65 HomoSapiens PMID:34811538 tetramer-sort yes amplicon-seq natural killer-like T cells healthy healthy_6 chip0516_754306 PBMC +13572 CASSQQGGNYGYTF TRBV6-1*01 TRBJ1-2*01 HLA-A*02:01 B2M MHCI FLYALALLL LMP2 EBV PMID:34811538 tetramer-sort yes amplicon-seq effector memory T cells healthy healthy_6 chip0516_613126 PBMC +13573 CASSLGQAYEQYF TRBV7-8*01 TRBJ2-7*01 HLA-B*08:01 B2M MHCI FLRGRAYGL EBNA3A EBV PMID:34811538 tetramer-sort yes amplicon-seq effector memory T cells healthy healthy_8 chip0516_310360 PBMC +13574 CILPLAGGTSYGKLTF TRAV26-2*01 TRAJ52*01 CASSLGQAYEQYF TRBV7-8*01 TRBJ2-7*01 HLA-B*08:01 B2M MHCI FLRGRAYGL EBNA3A EBV PMID:34811538 tetramer-sort yes amplicon-seq effector memory T cells healthy healthy_8 chip0516_722149 PBMC +13575 CVVSDRNFNKFYF TRAV8-2*01 TRAJ21*01 CASSWTVGADTQYF TRBV6-5*01 TRBJ2-3*01 HLA-A*01:01 B2M MHCI CTELKLSDY NP InfluenzaA PMID:34811538 tetramer-sort yes amplicon-seq transitional T cells between effector and memory populations healthy healthy_8 chip0516_605012 PBMC +13576 CASSLGQAYEQYF TRBV7-8*01 TRBJ2-7*01 HLA-B*08:01 B2M MHCI FLRGRAYGL EBNA3A EBV PMID:34811538 tetramer-sort yes amplicon-seq effector memory T cells healthy healthy_8 chip0516_410162 PBMC +13578 CASSLVRDYEQYF TRBV5-6*01 TRBJ2-7*01 HLA-B*08:01 B2M MHCI CPLSKILL LMP2A EBV PMID:34811538 tetramer-sort yes amplicon-seq transitional T cells between effector and memory populations healthy healthy_9 chip0516_817583 PBMC +13579 CAVLMDSNYQLIW TRAV21*01 TRAJ33*01 HLA-A*02:01 B2M MHCI CLGGLLTMV LMP2A EBV PMID:34811538 tetramer-sort yes amplicon-seq effector memory T cells healthy healthy_6 chip0516_184853 PBMC +13580 CAVRLSGGSYIPTF TRAV1-2*01 TRAJ6*01 HLA-B*08:01 B2M MHCI EAKQKGFVPF GAD2 HomoSapiens PMID:34811538 tetramer-sort yes amplicon-seq Naive T cells healthy healthy_8 chip0516_750024 PBMC +13581 CILPLAGGTSYGKLTF TRAV26-2*01 TRAJ52*01 CASSSGQAYEQYF TRBV7-8*01 TRBJ2-7*01 HLA-B*08:01 B2M MHCI FLRGRAYGL EBNA3A EBV PMID:34811538 tetramer-sort yes amplicon-seq transitional T cells between effector and memory populations healthy healthy_8 chip0516_606217 PBMC +13582 CAMRDLVDTGNQFYF TRAV14/DV4*01 TRAJ49*01 CASSFKGAEGYTF TRBV6-5*01 TRBJ1-2*01 HLA-A*02:01 B2M MHCI LLAGIGTVPI PGT HomoSapiens PMID:34811538 tetramer-sort yes amplicon-seq Naive T cells healthy healthy_7 chip0516_513022 PBMC +13584 CASSGDGMNTEAFF TRBV10-2*01 TRBJ1-1*01 HLA-A*02:01 B2M MHCI CLGGLLTMV LMP2A EBV PMID:34811538 tetramer-sort yes amplicon-seq effector memory T cells healthy healthy_6 chip0516_852824 PBMC +13585 CASDPDGYNEQFF TRBV5-1*01 TRBJ2-1*01 HLA-A*01:01 B2M MHCI VTDAAHLLI ZNT8 HomoSapiens PMID:34811538 tetramer-sort yes amplicon-seq effector memory T cells healthy healthy_9 chip0516_832641 PBMC +13586 CAVLMDSNYQLIW TRAV21*01,TRAV12-3*01 TRAJ33*01 CASSQGGGANEQFF TRBV4-1*01 TRBJ2-1*01 HLA-A*02:01 B2M MHCI CLGGLLTMV LMP2A EBV PMID:34811538 tetramer-sort yes amplicon-seq effector memory T cells healthy healthy_6 chip0516_357121 PBMC +13587 CASSGDGMNTEAFF TRBV10-2*01 TRBJ1-1*01 HLA-A*02:01 B2M MHCI CLGGLLTMV LMP2A EBV PMID:34811538 tetramer-sort yes amplicon-seq effector memory T cells healthy healthy_6 chip0516_684607 PBMC +13588 CASSGDGMNTEAFF TRBV10-2*01 TRBJ1-1*01 HLA-A*02:01 B2M MHCI CLGGLLTMV LMP2A EBV PMID:34811538 tetramer-sort yes amplicon-seq effector memory T cells healthy healthy_6 chip0516_36781 PBMC +13589 CILPVAGGTSYGTLTF TRAV26-2*01 TRAJ52*01 HLA-B*08:01 B2M MHCI FLRGRAYGL EBNA3A EBV PMID:34811538 tetramer-sort yes amplicon-seq effector T cells healthy healthy_8 chip0516_546688 PBMC +13590 CTSSGDGMNTEAFF TRBV10-2*01 TRBJ1-1*01 HLA-A*02:01 B2M MHCI CLGGLLTMV LMP2A EBV PMID:34811538 tetramer-sort yes amplicon-seq central memory T cells healthy healthy_6 chip0516_297854 PBMC +13591 CAMRYYGGATNKLIF TRAV14/DV4*01 TRAJ32*01 HLA-A*01:01 B2M MHCI ALASCMGLIY M1 InfluenzaA PMID:34811538 tetramer-sort yes amplicon-seq Naive T cells healthy healthy_9 chip0516_120180 PBMC +13592 CASSGDGMNTEAFF TRBV10-2*01 TRBJ1-1*01 HLA-A*02:01 B2M MHCI CLGGLLTMV LMP2A EBV PMID:34811538 tetramer-sort yes amplicon-seq effector memory T cells healthy healthy_6 chip0516_738854 PBMC +13593 CASSAPGQANEQYF TRBV7-9*01 TRBJ2-7*01 HLA-B*08:01 B2M MHCI YLKDQQLL gp160 HIV-1 PMID:34811538 tetramer-sort yes amplicon-seq Naive T cells healthy healthy_8 chip0516_606016 PBMC +13595 CASATNAGKSTF TRAV17*01 TRAJ27*01 CSAPPGEREYGEQFF TRBV20-1*01 TRBJ2-1*01 HLA-A*02:01 B2M MHCI CLGGLLTMV LMP2A EBV PMID:34811538 tetramer-sort yes amplicon-seq central memory T cells healthy healthy_6 chip0516_79119 PBMC +13596 CAVRDAGGGNKLTF TRAV1-1*01 TRAJ10*01 HLA-A*02:01 B2M MHCI CLGGLLTMV LMP2A EBV PMID:34811538 tetramer-sort yes amplicon-seq effector memory T cells healthy healthy_6 chip0516_531080 PBMC +13597 CASSLGQAYEQYF TRBV7-8*01 TRBJ2-7*01 HLA-B*08:01 B2M MHCI FLRGRAYGL EBNA3A EBV PMID:34811538 tetramer-sort yes amplicon-seq effector T cells healthy healthy_8 chip0516_749094 PBMC +13598 CADVDGQKLLF TRAV13-2*01 TRAJ16*01 CASSQGQGGSQHF TRBV4-1*01 TRBJ1-5*01 HLA-B*08:01 B2M MHCI LWMRLLPL INS HomoSapiens PMID:34811538 tetramer-sort yes amplicon-seq Naive T cells healthy healthy_8 chip0516_451860 PBMC +13599 CAVNAGKSTF TRAV12-2*01 TRAJ27*01 CASSTLDRGTDTQYF TRBV28*01 TRBJ2-3*01 HLA-A*02:01 B2M MHCI LLAGIGTVPI PGT HomoSapiens PMID:34811538 tetramer-sort yes amplicon-seq Naive T cells healthy healthy_7 chip0516_506538 PBMC +13600 CASSGDGMNTEAFF TRBV10-2*01 TRBJ1-1*01 HLA-A*02:01 B2M MHCI CLGGLLTMV LMP2A EBV PMID:34811538 tetramer-sort yes amplicon-seq effector memory T cells healthy healthy_6 chip0516_135892 PBMC +13601 CAVALSSKSTF TRAV8-3*01 TRAJ27*01 HLA-A*02:01 B2M MHCI CLGGLLTMV LMP2A EBV PMID:34811538 tetramer-sort yes amplicon-seq effector memory T cells healthy healthy_6 chip0516_665229 PBMC +13603 FPVSLTFat?NQGRKHNT TRAV21*01 TRAJ23*01 HLA-A*01:01 B2M MHCI CTELKLSDY NP InfluenzaA PMID:34811538 tetramer-sort yes amplicon-seq Naive T cells healthy healthy_9 chip0516_404456 PBMC +13604 CASSSSALISDEQFF TRBV11-2*01 TRBJ2-1*01 HLA-A*02:01 B2M MHCI YVLDHLIVV BRLF1 EBV PMID:34811538 tetramer-sort yes amplicon-seq effector memory T cells healthy healthy_6 chip0516_617217 PBMC +13605 CAVLMDSNYQLIW TRAV21*01 TRAJ33*01 CASSGDGMNTEAFF TRBV10-2*01 TRBJ1-1*01 HLA-A*02:01 B2M MHCI CLGGLLTMV LMP2A EBV PMID:34811538 tetramer-sort yes amplicon-seq effector memory T cells healthy healthy_6 chip0516_128583 PBMC +13607 CAVALSSKSTF TRAV8-3*01 TRAJ27*01 HLA-A*02:01 B2M MHCI CLGGLLTMV LMP2A EBV PMID:34811538 tetramer-sort yes amplicon-seq effector memory T cells healthy healthy_6 chip0516_100473 PBMC +13609 CASSSGQAYEQYF TRBV7-8*01 TRBJ2-7*01 HLA-B*08:01 B2M MHCI FLRGRAYGL EBNA3A EBV PMID:34811538 tetramer-sort yes amplicon-seq effector memory T cells healthy healthy_8 chip0516_877268 PBMC +13611 CAYSGATNKLIF TRAV38-1*01 TRAJ32*01 CASSLNSYNQPQHF TRBV2*01 TRBJ1-5*01 HLA-B*08:01 B2M MHCI EGHLKRNIV GFAP HomoSapiens PMID:34811538 tetramer-sort yes amplicon-seq Naive T cells healthy healthy_8 chip0516_818462 PBMC +13612 CAVLMDSNYQLIW TRAV21*01 TRAJ33*01 CASSGDGMNTEAFF TRBV10-2*01 TRBJ1-1*01 HLA-A*02:01 B2M MHCI CLGGLLTMV LMP2A EBV PMID:34811538 tetramer-sort yes amplicon-seq effector memory T cells healthy healthy_6 chip0516_396686 PBMC +13614 CAVALSSKSTF TRAV8-3*01 TRAJ27*01 HLA-A*02:01 B2M MHCI CLGGLLTMV LMP2A EBV PMID:34811538 tetramer-sort yes amplicon-seq effector memory T cells healthy healthy_6 chip0516_214657 PBMC +13615 CILPLAGGTSYGKLTS TRAV26-2*01 TRAJ52*01 CASSLGQAYEQYF TRBV7-8*01 TRBJ2-7*01 HLA-B*08:01 B2M MHCI FLRGRAYGL EBNA3A EBV PMID:34811538 tetramer-sort yes amplicon-seq central memory T cells healthy healthy_8 chip0516_350789 PBMC +13617 CASSDQGGGYGYTF TRBV6-1*01 TRBJ1-2*01 HLA-A*02:01 B2M MHCI FLYALALLL LMP2 EBV PMID:34811538 tetramer-sort yes amplicon-seq central memory T cells healthy healthy_6 chip0516_228789 PBMC +13618 CARSYGGRTDTQYF TRBV6-5*01 TRBJ2-3*01 HLA-A*02:01 B2M MHCI LLAGIGTVPI PGT HomoSapiens PMID:34811538 tetramer-sort yes amplicon-seq Naive T cells healthy healthy_6 chip0516_764520 PBMC +13620 CASSFGVGEGTEAFF TRBV7-3*01 TRBJ1-1*01 HLA-B*08:01 B2M MHCI RAKFKQLL BZLF1 EBV PMID:34811538 tetramer-sort yes amplicon-seq effector T cells healthy healthy_8 chip0516_338935 PBMC +13622 CAVALSSKSTF TRAV8-3*01 TRAJ27*01 CASSGDGMNTEAFF TRBV10-2*01 TRBJ1-1*01 HLA-A*02:01 B2M MHCI CLGGLLTMV LMP2A EBV PMID:34811538 tetramer-sort yes amplicon-seq effector memory T cells healthy healthy_6 chip0516_437906 PBMC +13623 CALTNAGGTSYGKLTF TRAV16*01 TRAJ52*01 CAWSVGGNEQFF TRBV30*01 TRBJ2-1*01 HLA-A*02:01 B2M MHCI YLLPGWKL VP3 RotavirusA PMID:34811538 tetramer-sort yes amplicon-seq Naive T cells healthy healthy_7 chip0516_380785 PBMC +13624 CASPADSNYQLIW TRAV24*01 TRAJ33*01 HLA-A*02:01 B2M MHCI ALAGIGILTV MART1 HomoSapiens PMID:34811538 tetramer-sort yes amplicon-seq Naive T cells healthy healthy_6 chip0516_574815 PBMC +13625 CASSSGQAYEQYF TRBV7-8*01 TRBJ2-7*01 HLA-B*08:01 B2M MHCI FLRGRAYGL EBNA3A EBV PMID:34811538 tetramer-sort yes amplicon-seq effector memory T cells healthy healthy_8 chip0516_167217 PBMC +13626 CAVNEGGADGLTF TRAV12-2*01 TRAJ45*01 HLA-B*08:01 B2M MHCI ILKGKFQTA NP InfluenzaA PMID:34811538 tetramer-sort yes amplicon-seq Naive T cells healthy healthy_9 chip0516_475319 PBMC +13629 CAMRDVTGGTSYGKLTF TRAV14/DV4*01 TRAJ52*01 HLA-B*08:01 B2M MHCI YAKWKLCSA ZNT8 HomoSapiens PMID:34811538 tetramer-sort yes amplicon-seq Naive T cells healthy healthy_8 chip0516_343015 PBMC +13630 CVVTAYYGNNRLAS TRAV12-1*01 TRAJ7*01 CASSQVAGGGQETQYF TRBV4-1*01 TRBJ2-5*01 HLA-B*08:01 B2M MHCI NLIFKWKSI G6PC2 HomoSapiens PMID:34811538 tetramer-sort yes amplicon-seq effector memory T cells healthy healthy_8 chip0516_246186 PBMC +13631 CAVTLSSKSTF TRAV8-3*01 TRAJ27*01 HLA-A*02:01 B2M MHCI CLGGLLTMV LMP2A EBV PMID:34811538 tetramer-sort yes amplicon-seq effector memory T cells healthy healthy_6 chip0516_738629 PBMC +13632 CILPLAGGTSYGKLTF TRAV26-2*01 TRAJ52*01 CASSLGQAYEQYF TRBV7-8*01 TRBJ2-7*01 HLA-B*08:01 B2M MHCI FLRGRAYGL EBNA3A EBV PMID:34811538 tetramer-sort yes amplicon-seq effector memory T cells healthy healthy_8 chip0516_76079 PBMC +13633 CALSEKG??aGADGLPF TRAV19*01 TRAJ45*01 CASSSRTGTEQYF TRBV11-3*01 TRBJ2-7*01 HLA-B*08:01 B2M MHCI GPKVKQWPL Pol HIV-1 PMID:34811538 tetramer-sort yes amplicon-seq Naive T cells healthy healthy_8 chip0516_80895 PBMC +13635 CASSQGGLNEQFF TRBV4-2*01 TRBJ2-1*01 HLA-A*02:01 B2M MHCI CINGVCWTV NS3 HCV PMID:34811538 tetramer-sort yes amplicon-seq effector memory T cells healthy healthy_7 chip0516_108082 PBMC +13636 CASSGDGMNTEAFF TRBV10-2*01 TRBJ1-1*01 HLA-A*02:01 B2M MHCI CLGGLLTMV LMP2A EBV PMID:34811538 tetramer-sort yes amplicon-seq effector memory T cells healthy healthy_6 chip0516_23101 PBMC +13637 CAPGGGGADGLTF TRAV12-3*01 TRAJ45*01 CASSPVGREYEQYF TRBV28*01 TRBJ2-7*01 HLA-A*02:01 B2M MHCI ILSAHVATA ZNT8 HomoSapiens PMID:34811538 tetramer-sort yes amplicon-seq Naive T cells healthy healthy_7 chip0516_294899 PBMC +13640 CASSWTGGLQETQYF TRBV7-3*01 TRBJ2-5*01 HLA-A*01:01 B2M MHCI STNVGSNTY IAPP HomoSapiens PMID:34811538 tetramer-sort yes amplicon-seq Naive T cells healthy healthy_8 chip0516_387704 PBMC +13641 CATEISATSYDKVIS TRAV30*01 TRAJ50*01 CSAEDRVWSNEQFF TRBV20-1*01 TRBJ2-1*01 HLA-B*08:01 B2M MHCI MALWMRLL INS HomoSapiens PMID:34811538 tetramer-sort yes amplicon-seq Naive T cells healthy healthy_8 chip0516_97278 PBMC +13642 CVVNQENSGYALNF TRAV12-1*01 TRAJ41*01 CASSAGGIYNEQFF TRBV2*01 TRBJ2-1*01 HLA-B*08:01 B2M MHCI QAKWRLQTL EBNA3A EBV PMID:34811538 tetramer-sort yes amplicon-seq Naive T cells healthy healthy_9 chip0516_197079 PBMC +13643 CILPLAGGTSYGKLTF TRAV26-2*01 TRAJ52*01 CASSLGQAYEQYF TRBV7-8*01 TRBJ2-7*01 HLA-B*08:01 B2M MHCI FLRGRAYGL EBNA3A EBV PMID:34811538 tetramer-sort yes amplicon-seq effector memory T cells healthy healthy_8 chip0516_614529 PBMC +13645 CASSHgg?NYGYTF TRBV5-1*01 TRBJ1-2*01 HLA-A*02:01 B2M MHCI CLGGLLTMV LMP2A EBV PMID:34811538 tetramer-sort yes amplicon-seq effector memory T cells healthy healthy_6 chip0516_560078 PBMC +13648 CVVIGQGFQKLVF TRAV12-1*01 TRAJ8*01 CASSLPLAGVATDTQYF TRBV12-3*01,TRBV12-4*01 TRBJ2-3*01 HLA-A*01:01 B2M MHCI VTDAAHLLI ZNT8 HomoSapiens PMID:34811538 tetramer-sort yes amplicon-seq Naive T cells healthy healthy_8 chip0516_278792 PBMC +13650 CAIANGQGPGADTQYF TRBV10-3*01 TRBJ2-3*01 HLA-A*01:01 B2M MHCI CTELKLSDY NP InfluenzaA PMID:34811538 tetramer-sort yes amplicon-seq effector memory T cells healthy healthy_9 chip0516_120322 PBMC +13651 CAVKTDTNAGKSTF TRAV12-2*01 TRAJ27*01 HLA-B*08:01 B2M MHCI FLRGRAYGL EBNA3A EBV PMID:34811538 tetramer-sort yes amplicon-seq effector memory T cells healthy healthy_8 chip0516_597181 PBMC +13652 CTVSDPALg?tDATNKLIF TRAV8-2*01 TRAJ32*01 CASSSGQGFNEQFF TRBV27*01 TRBJ2-1*01 HLA-B*08:01 B2M MHCI RAKFKQLL BZLF1 EBV PMID:34811538 tetramer-sort yes amplicon-seq Naive T cells healthy healthy_8 chip0516_139188 PBMC +13653 CAVALSSKSTF TRAV8-3*01 TRAJ27*01 HLA-A*02:01 B2M MHCI CLGGLLTMV LMP2A EBV PMID:34811538 tetramer-sort yes amplicon-seq effector memory T cells healthy healthy_6 chip0516_819319 PBMC +13654 CILPLAGGTSYGKLTF TRAV26-2*01 TRAJ52*01 CASSLGQAYEQYF TRBV7-8*01 TRBJ2-7*01 HLA-B*08:01 B2M MHCI FLRGRAYGL EBNA3A EBV PMID:34811538 tetramer-sort yes amplicon-seq effector memory T cells healthy healthy_8 chip0516_164611 PBMC +13655 CIARLLAct?SNTGKLIF TRAV26-1*01 TRAJ37*01 HLA-A*02:01 B2M MHCI FLYALALLL LMP2 EBV PMID:34811538 tetramer-sort yes amplicon-seq central memory T cells healthy healthy_6 chip0516_253097 PBMC +13656 RSVI*Ict?GAFPTLF TRAV8-1*01 TRAJ9*01 HLA-A*02:01 B2M MHCI FLYALALLL LMP2 EBV PMID:34811538 tetramer-sort yes amplicon-seq central memory T cells healthy healthy_6 chip0516_174518 PBMC +13657 CLLPLAGGTRYGKLTF TRAV26-2*01 TRAJ52*01 CASSLGQAYEQYF TRBV7-8*01 TRBJ2-7*01 HLA-B*08:01 B2M MHCI FLRGRAYGL EBNA3A EBV PMID:34811538 tetramer-sort yes amplicon-seq effector memory T cells healthy healthy_8 chip0516_656794 PBMC +13658 CILPLAGGTSYGKLTF TRAV26-2*01 TRAJ52*01 CASSLGQAYEQYF TRBV7-8*01 TRBJ2-7*01 HLA-B*08:01 B2M MHCI FLRGRAYGL EBNA3A EBV PMID:34811538 tetramer-sort yes amplicon-seq effector memory T cells healthy healthy_8 chip0516_173245 PBMC +13660 CASSLVEPQGYGYTF TRBV11-2*01 TRBJ1-2*01 HLA-B*08:01 B2M MHCI RAKFKQLL BZLF1 EBV PMID:34811538 tetramer-sort yes amplicon-seq effector T cells healthy healthy_8 chip0516_503485 PBMC +13661 CASSLGQAYEQYF TRBV7-8*01 TRBJ2-7*01 HLA-B*08:01 B2M MHCI FLRGRAYGL EBNA3A EBV PMID:34811538 tetramer-sort yes amplicon-seq effector memory T cells healthy healthy_8 chip0516_807084 PBMC +13663 CAVEDGQKLLF TRAV12-2*01 TRAJ16*01 HLA-A*02:01 B2M MHCI ALGIGILTV MART1 HomoSapiens PMID:34811538 tetramer-sort yes amplicon-seq Naive T cells healthy healthy_6 chip0516_871487 PBMC +13664 CATSEAGSTDTQYF TRBV24-1*01 TRBJ2-3*01 HLA-A*02:01 B2M MHCI YLLLRVLNI IGRP HomoSapiens PMID:34811538 tetramer-sort yes amplicon-seq Naive T cells healthy healthy_7 chip0516_282368 PBMC +13666 CAVLMDSNYQLIW TRAV21*01 TRAJ33*01 CASSGDGMNTEAFF TRBV10-2*01 TRBJ1-1*01 HLA-A*02:01 B2M MHCI CLGGLLTMV LMP2A EBV PMID:34811538 tetramer-sort yes amplicon-seq effector memory T cells healthy healthy_6 chip0516_868449 PBMC +13667 CILPLAGGTSYGKLTF TRAV26-2*01 TRAJ52*01 CASSLGQAYEQYF TRBV7-8*01 TRBJ2-7*01 HLA-B*08:01 B2M MHCI FLRGRAYGL EBNA3A EBV PMID:34811538 tetramer-sort yes amplicon-seq effector memory T cells healthy healthy_8 chip0516_264972 PBMC +13668 WSGYSTLTF TRAV27*01 TRAJ11*01 CASSYQGGNEQFF TRBV6-5*01 TRBJ2-1*01 HLA-A*02:01 B2M MHCI FLYALALLL LMP2 EBV PMID:34811538 tetramer-sort yes amplicon-seq effector memory T cells healthy healthy_7 chip0516_221083 PBMC +13669 CILPLAGGTSYGKLTF TRAV26-2*01 TRAJ52*01 CASSLGQAYEQYF TRBV7-8*01 TRBJ2-7*01 HLA-B*08:01 B2M MHCI FLRGRAYGL EBNA3A EBV PMID:34811538 tetramer-sort yes amplicon-seq effector memory T cells healthy healthy_8 chip0516_116776 PBMC +13670 CAVITYSGAGSYQLTF TRAV12-2*01 TRAJ28*01 HLA-B*08:01 B2M MHCI RAKFKQLL BZLF1 EBV PMID:34811538 tetramer-sort yes amplicon-seq central memory T cells healthy healthy_8 chip0516_693684 PBMC +13671 CASSLGQAYEQYF TRBV7-8*01 TRBJ2-7*01 HLA-B*08:01 B2M MHCI FLRGRAYGL EBNA3A EBV PMID:34811538 tetramer-sort yes amplicon-seq effector memory T cells healthy healthy_8 chip0516_730990 PBMC +13672 CATEGDSGYSTLTF TRAV17*01 TRAJ11*01 HLA-A*02:01 B2M MHCI FLYALALLL LMP2 EBV PMID:34811538 tetramer-sort yes amplicon-seq central memory T cells healthy healthy_6 chip0516_614620 PBMC +13673 SAVLScg??gtLQFYY TRAV14/DV4*01 TRAJ49*01 CASTERPSLYNEQFF TRBV6-1*01 TRBJ2-1*01 HLA-A*02:01 B2M MHCI PLTFGWCYKL NEF InfluenzaA PMID:34811538 tetramer-sort yes amplicon-seq Naive T cells healthy healthy_7 chip0516_461271 PBMC +13676 CILPLAGGTSYGKLTF TRAV26-2*01 TRAJ52*01 CASSLGQAYEQYF TRBV7-8*01 TRBJ2-7*01 HLA-B*08:01 B2M MHCI FLRGRAYGL EBNA3A EBV PMID:34811538 tetramer-sort yes amplicon-seq effector memory T cells healthy healthy_8 chip0516_507918 PBMC +13678 CILPLAGGTSYGKLTF TRAV26-2*01 TRAJ52*01 CASSLGQAYEQYF TRBV7-8*01 TRBJ2-7*01 HLA-B*08:01 B2M MHCI FLRGRAYGL EBNA3A EBV PMID:34811538 tetramer-sort yes amplicon-seq effector T cells healthy healthy_8 chip0516_440780 PBMC +13679 CASSSNGGGDRHEAFF TRBV13*01 TRBJ1-1*01 HLA-B*08:01 B2M MHCI MMIARFKM GAD2 HomoSapiens PMID:34811538 tetramer-sort yes amplicon-seq Naive T cells healthy healthy_9 chip0516_172463 PBMC +13681 CAVNGGERSGGSNYKLTF TRAV12-2*01 TRAJ53*01 CASSVGGISPLHF TRBV9*01 TRBJ1-6*01 HLA-A*02:01 B2M MHCI YLLEMLWRL LMP1 EBV PMID:34811538 tetramer-sort yes amplicon-seq central memory T cells healthy healthy_6 chip0516_412185 PBMC +13682 CAARNTNAGKSTF TRAV13-1*01 TRAJ27*01 HLA-A*02:01 B2M MHCI GILGFVFTL M1 InfluenzaA PMID:34811538 tetramer-sort yes amplicon-seq transitional T cells between effector and memory populations healthy healthy_6 chip0516_457240 PBMC +13684 CAEAQGGGNKLTF TRAV13-2*01 TRAJ10*01 HLA-B*08:01 B2M MHCI RAKFKQLL BZLF1 EBV PMID:34811538 tetramer-sort yes amplicon-seq Naive T cells healthy healthy_9 chip0516_591947 PBMC +13685 CAISESVGRDEQFF TRBV10-3*01 TRBJ2-1*01 HLA-A*01:01 B2M MHCI CTELKLSDY NP InfluenzaA PMID:34811538 tetramer-sort yes amplicon-seq Naive T cells healthy healthy_8 chip0516_322995 PBMC +13688 CAVTLTLYSGAGSYQLTF TRAV21*01 TRAJ28*01 CASSLMGTGGLSEKLFF TRBV28*01 TRBJ1-4*01 HLA-B*08:01 B2M MHCI QAKWRLQTL EBNA3A EBV PMID:34811538 tetramer-sort yes amplicon-seq effector memory T cells healthy healthy_8 chip0516_350771 PBMC +13690 CAGPPVP??gVNRKLTF TRAV25*01 TRAJ56*01 CASSFGGSNEQFF TRBV12-3*01,TRBV12-4*01 TRBJ2-1*01 HLA-A*02:01 B2M MHCI NLFLFLFAV IGRP HomoSapiens PMID:34811538 tetramer-sort yes amplicon-seq Naive T cells healthy healthy_6 chip0516_324349 PBMC +13691 CILPLAGGTRYGTLTF TRAV26-2*01 TRAJ52*01 CASSSGQAYEQYF TRBV7-8*01 TRBJ2-7*01 HLA-B*08:01 B2M MHCI FLRGRAYGL EBNA3A EBV PMID:34811538 tetramer-sort yes amplicon-seq effector T cells healthy healthy_8 chip0516_567229 PBMC +13693 CASYSTSGGQETQYF TRBV2*01 TRBJ2-5*01 HLA-A*01:01 B2M MHCI CTELKLSDY NP InfluenzaA PMID:34811538 tetramer-sort yes amplicon-seq central memory T cells healthy healthy_8 chip0516_882415 PBMC +13695 CARTPLGPHTQYF TRBV25-1*01 TRBJ2-3*01 HLA-A*02:01 B2M MHCI SLYNTVATLY GAG HIV-1 PMID:34811538 tetramer-sort yes amplicon-seq Naive T cells healthy healthy_6 chip0516_248161 PBMC +13696 CASSLGTSGGAYEQFF TRBV7-6*01 TRBJ2-1*01 HLA-B*08:01 B2M MHCI LWMRLLPL INS HomoSapiens PMID:34811538 tetramer-sort yes amplicon-seq Naive T cells healthy healthy_9 chip0516_210357 PBMC +13697 CAREEEg?tADGLTF TRAV10*01 TRAJ45*01 CAISVDYEQYF TRBV10-3*01 TRBJ2-7*01 HLA-A*01:01 B2M MHCI HSNLNDATY NP InfluenzaA PMID:34811538 tetramer-sort yes amplicon-seq Naive T cells healthy healthy_8 chip0516_178512 PBMC +13698 CAVALSSKSTF TRAV8-3*01 TRAJ27*01 CASSGDGMNTEAFF TRBV10-2*01 TRBJ1-1*01 HLA-A*02:01 B2M MHCI CLGGLLTMV LMP2A EBV PMID:34811538 tetramer-sort yes amplicon-seq effector memory T cells healthy healthy_6 chip0516_818232 PBMC +13699 CASSFLDREAYEQYF TRBV7-9*01 TRBJ2-7*01 HLA-A*02:01 B2M MHCI ALAGIGILTV MART1 HomoSapiens PMID:34811538 tetramer-sort yes amplicon-seq Naive T cells healthy healthy_7 chip0516_507494 PBMC +13700 CAVGAgt?YDKLIF TRAV8-3*01 TRAJ34*01 HLA-B*08:01 B2M MHCI YAKWKLCSA ZNT8 HomoSapiens PMID:34811538 tetramer-sort yes amplicon-seq Naive T cells healthy healthy_8 chip0516_734014 PBMC +13701 CIVD*cg??ccSKLSF TRAV26-1*01 TRAJ20*01 CASSELPGQGSYEQYF TRBV9*01 TRBJ2-7*01 HLA-B*08:01 B2M MHCI LRLRLDQL GFAP HomoSapiens PMID:34811538 tetramer-sort yes amplicon-seq Naive T cells healthy healthy_8 chip0516_211707 PBMC +13704 CASSLGQAYEQYF TRBV7-8*01 TRBJ2-7*01 HLA-B*08:01 B2M MHCI FLRGRAYGL EBNA3A EBV PMID:34811538 tetramer-sort yes amplicon-seq effector memory T cells healthy healthy_8 chip0516_566667 PBMC +13705 CAVALSSKSTF TRAV8-3*01 TRAJ27*01 HLA-A*02:01 B2M MHCI CLGGLLTMV LMP2A EBV PMID:34811538 tetramer-sort yes amplicon-seq effector memory T cells healthy healthy_6 chip0516_328182 PBMC +13707 CASYSTSGGQETQYF TRBV2*01 TRBJ2-5*01 HLA-A*01:01 B2M MHCI CTELKLSDY NP InfluenzaA PMID:34811538 tetramer-sort yes amplicon-seq transitional T cells between effector and memory populations healthy healthy_8 chip0516_784934 PBMC +13708 CASSGDGMNTEAFF TRBV10-2*01 TRBJ1-1*01 HLA-A*02:01 B2M MHCI CLGGLLTMV LMP2A EBV PMID:34811538 tetramer-sort yes amplicon-seq effector memory T cells healthy healthy_6 chip0516_569639 PBMC +13709 CAVLMDSNYQLIW TRAV21*01 TRAJ33*01 CASSGDGMNTEAFF TRBV10-2*01 TRBJ1-1*01 HLA-A*02:01 B2M MHCI CLGGLLTMV LMP2A EBV PMID:34811538 tetramer-sort yes amplicon-seq effector memory T cells healthy healthy_6 chip0516_286298 PBMC +13710 CASSQQGGNYGYTF TRBV6-1*01 TRBJ1-2*01 HLA-A*02:01 B2M MHCI FLYALALLL LMP2 EBV PMID:34811538 tetramer-sort yes amplicon-seq central memory T cells healthy healthy_6 chip0516_87812 PBMC +13711 CAVALSSKSTF TRAV8-3*01 TRAJ27*01 HLA-A*02:01 B2M MHCI CLGGLLTMV LMP2A EBV PMID:34811538 tetramer-sort yes amplicon-seq effector memory T cells healthy healthy_6 chip0516_592523 PBMC +13712 CILPLAGGTSYGKLTF TRAV26-2*01 TRAJ52*01 CASSLGQAYEQYF TRBV7-8*01 TRBJ2-7*01 HLA-B*08:01 B2M MHCI FLRGRAYGL EBNA3A EBV PMID:34811538 tetramer-sort yes amplicon-seq effector T cells healthy healthy_8 chip0516_281068 PBMC +13713 CAVKGDTNAGKSTF TRAV12-2*01 TRAJ27*01 HLA-B*08:01 B2M MHCI FLRGRAYGL EBNA3A EBV PMID:34811538 tetramer-sort yes amplicon-seq effector memory T cells healthy healthy_8 chip0516_597280 PBMC +13714 CAFFPGNQFYF TRAV24*01 TRAJ49*01 HLA-B*08:01 B2M MHCI RPIIRPATL NP InfluenzaA PMID:34811538 tetramer-sort yes amplicon-seq transitional T cells between effector and memory populations healthy healthy_8 chip0516_522863 PBMC +13715 CASSLGQAYEQYF TRBV7-8*01 TRBJ2-7*01 HLA-B*08:01 B2M MHCI FLRGRAYGL EBNA3A EBV PMID:34811538 tetramer-sort yes amplicon-seq central memory T cells healthy healthy_8 chip0516_262967 PBMC +13716 CASSGDGMNTEAFF TRBV10-2*01 TRBJ1-1*01 HLA-A*02:01 B2M MHCI CLGGLLTMV LMP2A EBV PMID:34811538 tetramer-sort yes amplicon-seq effector memory T cells healthy healthy_6 chip0516_166284 PBMC +13718 CAVALSSKSTF TRAV8-3*01 TRAJ27*01 CASSGDGMNTEAFF TRBV10-2*01 TRBJ1-1*01 HLA-A*02:01 B2M MHCI CLGGLLTMV LMP2A EBV PMID:34811538 tetramer-sort yes amplicon-seq effector memory T cells healthy healthy_6 chip0516_198673 PBMC +13719 CAVSDTDKLIF TRAV8-1*01 TRAJ34*01 CASRRLVGSAGELFF TRBV19*01 TRBJ2-2*01 HLA-A*02:01 B2M MHCI YVLDHLIVV BRLF1 EBV PMID:34811538 tetramer-sort yes amplicon-seq effector memory T cells healthy healthy_6 chip0516_870337 PBMC +13720 CASSDSIGFNSPLHF TRBV6-4*01 TRBJ1-6*01 HLA-B*08:01 B2M MHCI FLRGRAYGL EBNA3A EBV PMID:34811538 tetramer-sort yes amplicon-seq effector memory T cells healthy healthy_8 chip0516_549968 PBMC +13721 CAEDHALNF TRAV5*01,TRAV23/DV6*01 TRAJ41*01 CASSSGQGDNEQFF TRBV11-3*01,TRBV11-2*01 TRBJ2-1*01 HLA-A*02:01 B2M MHCI GLCTLVAML BLMF1 EBV PMID:34811538 tetramer-sort yes amplicon-seq effector T cells healthy healthy_6 chip0516_519399 PBMC +13722 CASSDWGSGSVNEQFF TRBV6-1*01 TRBJ2-1*01 HLA-A*02:01 B2M MHCI LLAGIGTVPI PGT HomoSapiens PMID:34811538 tetramer-sort yes amplicon-seq Naive T cells healthy healthy_6 chip0516_326481 PBMC +13723 CASSTKTNEQFF TRBV2*01 TRBJ2-1*01 HLA-B*08:01 B2M MHCI LPARTSPM PTPRN HomoSapiens PMID:34811538 tetramer-sort yes amplicon-seq transitional T cells between effector and memory populations healthy healthy_8 chip0516_750770 PBMC +13724 CVVNLQGGNMLTF TRAV12-1*01 TRAJ39*01 HLA-B*08:01 B2M MHCI HLKRNIVV GFAP HomoSapiens PMID:34811538 tetramer-sort yes amplicon-seq Naive T cells healthy healthy_8 chip0516_489246 PBMC +13727 CASSLGQAYEQYF TRBV7-8*01 TRBJ2-7*01 HLA-B*08:01 B2M MHCI FLRGRAYGL EBNA3A EBV PMID:34811538 tetramer-sort yes amplicon-seq transitional T cells between effector and memory populations healthy healthy_10 chip0516_778007 PBMC +13728 CAVAWLYSGAGSYQLTF TRAV8-3*01 TRAJ28*01 CASSFKDPYEQYF TRBV27*01 TRBJ2-7*01 HLA-B*08:01 B2M MHCI QAKWRLQTL EBNA3A EBV PMID:34811538 tetramer-sort yes amplicon-seq central memory T cells healthy healthy_8 chip0516_799531 PBMC +13729 CAVALSSKSPF TRAV8-3*01 TRAJ27*01 HLA-A*02:01 B2M MHCI CLGGLLTMV LMP2A EBV PMID:34811538 tetramer-sort yes amplicon-seq effector memory T cells healthy healthy_6 chip0516_671641 PBMC +13730 CASSGDGMNTEAFF TRBV10-2*01 TRBJ1-1*01 HLA-A*02:01 B2M MHCI CLGGLLTMV LMP2A EBV PMID:34811538 tetramer-sort yes amplicon-seq effector memory T cells healthy healthy_6 chip0516_544004 PBMC +13731 CAVGEDRLMF TRAV8-3*01 TRAJ31*01 HLA-B*08:01 B2M MHCI RAKFKQLL BZLF1 EBV PMID:34811538 tetramer-sort yes amplicon-seq effector T cells healthy healthy_9 chip0516_444828 PBMC +13732 RILPLASGTSYGKLTF TRAV26-2*01 TRAJ52*01 CASSLGQAYEQYF TRBV7-8*01 TRBJ2-7*01 HLA-B*08:01 B2M MHCI FLRGRAYGL EBNA3A EBV PMID:34811538 tetramer-sort yes amplicon-seq central memory T cells healthy healthy_8 chip0516_22730 PBMC +13733 CILPLAGGTSYGKLTF TRAV26-2*01 TRAJ52*01 CASSLGQAYEQYF TRBV7-8*01 TRBJ2-7*01 HLA-B*08:01 B2M MHCI FLRGRAYGL EBNA3A EBV PMID:34811538 tetramer-sort yes amplicon-seq effector memory T cells healthy healthy_8 chip0516_863525 PBMC +13734 CASTSGSYEQYF TRBV10-3*01 TRBJ2-7*01 HLA-B*08:01 B2M MHCI EAKQKGFVPF GAD2 HomoSapiens PMID:34811538 tetramer-sort yes amplicon-seq Naive T cells healthy healthy_9 chip0516_788653 PBMC +13735 CASSGDGMNTEAFF TRBV10-2*01 TRBJ1-1*01 HLA-A*02:01 B2M MHCI CLGGLLTMV LMP2A EBV PMID:34811538 tetramer-sort yes amplicon-seq effector memory T cells healthy healthy_6 chip0516_880064 PBMC +13736 CATVGNSGYSTLTF TRAV17*01 TRAJ11*01 CARRPLGGADGYTF TRBV6-1*01 TRBJ1-2*01 HLA-A*02:01 B2M MHCI FLYALALLL LMP2 EBV PMID:34811538 tetramer-sort yes amplicon-seq central memory T cells healthy healthy_6 chip0516_583417 PBMC +13737 CASSSTQGQLEQYF TRBV28*01 TRBJ2-7*01 HLA-A*02:01 B2M MHCI QLARQQVHV GFAP HomoSapiens PMID:34811538 tetramer-sort yes amplicon-seq Naive T cells healthy healthy_7 chip0516_360657 PBMC +13738 CASSGDGMNTEAFF TRBV10-2*01 TRBJ1-1*01 HLA-A*02:01 B2M MHCI CLGGLLTMV LMP2A EBV PMID:34811538 tetramer-sort yes amplicon-seq effector memory T cells healthy healthy_6 chip0516_257616 PBMC +13739 CAVRDTTGNTPLVF TRAV1-1*01 TRAJ29*01 HLA-B*08:01 B2M MHCI QAKWRLQTL EBNA3A EBV PMID:34811538 tetramer-sort yes amplicon-seq Naive T cells healthy healthy_9 chip0516_274032 PBMC +13740 CAPGGSGGYQKVTF TRAV16*01 TRAJ13*01 HLA-A*02:01 B2M MHCI FLYALALLL LMP2 EBV PMID:34811538 tetramer-sort yes amplicon-seq central memory T cells healthy healthy_7 chip0516_845063 PBMC +13742 CASSGDGMNTEASF TRBV10-2*01 TRBJ1-1*01 HLA-A*02:01 B2M MHCI CLGGLLTMV LMP2A EBV PMID:34811538 tetramer-sort yes amplicon-seq effector memory T cells healthy healthy_6 chip0516_106446 PBMC +13743 CILPLAGGPRYGTLTF TRAV26-2*01 TRAJ52*01 CASSLGQAYEQYF TRBV7-8*01 TRBJ2-7*01 HLA-B*08:01 B2M MHCI FLRGRAYGL EBNA3A EBV PMID:34811538 tetramer-sort yes amplicon-seq effector memory T cells healthy healthy_8 chip0516_428545 PBMC +13744 CASSGDGMNTEAFF TRBV10-2*01 TRBJ1-1*01 HLA-A*02:01 B2M MHCI CLGGLLTMV LMP2A EBV PMID:34811538 tetramer-sort yes amplicon-seq effector memory T cells healthy healthy_6 chip0516_280988 PBMC +13746 CTLPLAGGTSYGKLTF TRAV26-2*01 TRAJ52*01 HLA-B*08:01 B2M MHCI FLRGRAYGL EBNA3A EBV PMID:34811538 tetramer-sort yes amplicon-seq effector memory T cells healthy healthy_8 chip0516_311623 PBMC +13747 CILPLAGGTSYGKADI TRAV26-2*01 TRAJ52*01 HLA-B*08:01 B2M MHCI FLRGRAYGL EBNA3A EBV PMID:34811538 tetramer-sort yes amplicon-seq effector memory T cells healthy healthy_8 chip0516_57970 PBMC +13748 CALMAQAGTALIF TRAV19*01 TRAJ15*01 CASSYGEGPNQPQHF TRBV28*01 TRBJ1-5*01 HLA-A*01:01 B2M MHCI ALASCMGLIY M1 InfluenzaA PMID:34811538 tetramer-sort yes amplicon-seq Naive T cells tet_neg chip0516_669710 PBMC +13749 CASSGDGMNTEAFF TRBV10-2*01 TRBJ1-1*01 HLA-A*02:01 B2M MHCI CLGGLLTMV LMP2A EBV PMID:34811538 tetramer-sort yes amplicon-seq effector memory T cells healthy healthy_6 chip0516_303669 PBMC +13750 CAVKAPYSSASKLLF TRAV12-2*01 TRAJ3*01 HLA-B*08:01 B2M MHCI MALWMRLL INS HomoSapiens PMID:34811538 tetramer-sort yes amplicon-seq effector T cells healthy healthy_8 chip0516_190344 PBMC +13751 CAVLMDSNYQLIW TRAV21*01 TRAJ33*01 HLA-A*02:01 B2M MHCI CLGGLLTMV LMP2A EBV PMID:34811538 tetramer-sort yes amplicon-seq effector memory T cells healthy healthy_6 chip0516_427153 PBMC +13752 CAPSASYNFNKFYF TRAV41*01 TRAJ21*01 CASSLGFPGELFF TRBV7-6*01 TRBJ2-2*01 HLA-A*02:01 B2M MHCI GIIYIIYKL P3A CoxsackievirusB PMID:34811538 tetramer-sort yes amplicon-seq Naive T cells healthy healthy_7 chip0516_368853 PBMC +13753 CILPLAGGTSYGKLTF TRAV26-2*01 TRAJ52*01 CASSLGQAYEQYF TRBV7-8*01 TRBJ2-7*01 HLA-B*08:01 B2M MHCI FLRGRAYGL EBNA3A EBV PMID:34811538 tetramer-sort yes amplicon-seq effector memory T cells healthy healthy_8 chip0516_807390 PBMC +13754 CILPLAGGTRYGKLTF TRAV26-2*01 TRAJ52*01 CASSLGQAYEQYF TRBV7-8*01 TRBJ2-7*01 HLA-B*08:01 B2M MHCI FLRGRAYGL EBNA3A EBV PMID:34811538 tetramer-sort yes amplicon-seq central memory T cells healthy healthy_8 chip0516_588698 PBMC +13755 CALSALgc?NTGKLLF TRAV12-3*01 TRAJ37*01 CASSLSGGGLETQYF TRBV9*01 TRBJ2-5*01 HLA-B*08:01 B2M MHCI AAKMYAFTL ZNT8 HomoSapiens PMID:34811538 tetramer-sort yes amplicon-seq Naive T cells healthy healthy_9 chip0516_186988 PBMC +13756 CAYNEKLTF TRAV3*01 TRAJ48*01 CSVTSPGLgc??ggEGGYEQYF TRBV29-1*01 TRBJ2-7*01 HLA-B*08:01 B2M MHCI LLNVKLAL GFAP HomoSapiens PMID:34811538 tetramer-sort yes amplicon-seq Naive T cells healthy healthy_9 chip0516_98735 PBMC +13757 CVLPLAGGTSYGKLTF TRAV26-2*01 TRAJ52*01 CANSLGQAYEQYF TRBV7-8*01 TRBJ2-7*01 HLA-B*08:01 B2M MHCI FLRGRAYGL EBNA3A EBV PMID:34811538 tetramer-sort yes amplicon-seq effector memory T cells healthy healthy_8 chip0516_734371 PBMC +13759 CAANTGGFKTIF TRAV13-1*01 TRAJ9*01 CASSQQGNTEAFF TRBV4-1*01 TRBJ1-1*01 HLA-B*08:01 B2M MHCI NLIFKWIL G6PC2 HomoSapiens PMID:34811538 tetramer-sort yes amplicon-seq Naive T cells healthy healthy_8 chip0516_77419 PBMC +13760 CASSPVFRGETGANVLTF TRBV11-1*01 TRBJ2-6*01 HLA-A*02:01 B2M MHCI LLAGIGTVPI PGT HomoSapiens PMID:34811538 tetramer-sort yes amplicon-seq central memory T cells healthy healthy_6 chip0516_548285 PBMC +13761 CALSG??cGDMRF TRAV16*01 TRAJ43*01 CASQGFGNTEAFF TRBV9*01 TRBJ1-1*01 HLA-B*08:01 B2M MHCI RPIIRPATL NP InfluenzaA PMID:34811538 tetramer-sort yes amplicon-seq transitional T cells between effector and memory populations healthy healthy_8 chip0516_285333 PBMC +13762 CASSTTLGDGDSYEQYF TRBV13*01 TRBJ2-7*01 HLA-B*08:01 B2M MHCI MMIARFKM GAD2 HomoSapiens PMID:34811538 tetramer-sort yes amplicon-seq effector T cells healthy healthy_8 chip0516_681573 PBMC +13763 CAVTLTLYSGAGSYQLTF TRAV21*01 TRAJ28*01 CASSLMGTGGLSEKLFF TRBV28*01 TRBJ1-4*01 HLA-B*08:01 B2M MHCI QAKWRLQTL EBNA3A EBV PMID:34811538 tetramer-sort yes amplicon-seq effector memory T cells healthy healthy_8 chip0516_475238 PBMC +13765 CATDGGSSNYKLTF TRAV17*01 TRAJ53*01 HLA-B*08:01 B2M MHCI YAKWKLCSA ZNT8 HomoSapiens PMID:34811538 tetramer-sort yes amplicon-seq Naive T cells healthy healthy_8 chip0516_483378 PBMC +13766 CILPLAGGTSYGKLTF TRAV26-2*01 TRAJ52*01 CASSLGQAYEQYF TRBV7-8*01 TRBJ2-7*01 HLA-B*08:01 B2M MHCI FLRGRAYGL EBNA3A EBV PMID:34811538 tetramer-sort yes amplicon-seq effector memory T cells healthy healthy_8 chip0516_878358 PBMC +13767 CASSLGQAYEQYF TRBV7-8*01 TRBJ2-7*01 HLA-B*08:01 B2M MHCI FLRGRAYGL EBNA3A EBV PMID:34811538 tetramer-sort yes amplicon-seq effector memory T cells healthy healthy_8 chip0516_875066 PBMC +13768 CAVSVT*MLNF TRAV29/DV5*01 TRAJ11*01 HLA-B*08:01 B2M MHCI RAKFKQLL BZLF1 EBV PMID:34811538 tetramer-sort yes amplicon-seq effector memory T cells healthy healthy_9 chip0516_751537 PBMC +13770 CAVGEDRLMF TRAV8-3*01 TRAJ31*01 HLA-B*08:01 B2M MHCI RAKFKQLL BZLF1 EBV PMID:34811538 tetramer-sort yes amplicon-seq effector memory T cells healthy healthy_9 chip0516_837522 PBMC +13773 CASTTGPETQYF TRBV2*01 TRBJ2-5*01 HLA-A*02:01 B2M MHCI ALAGIGILTV MART1 HomoSapiens PMID:34811538 tetramer-sort yes amplicon-seq Naive T cells healthy healthy_7 chip0516_475671 PBMC +13775 CAVHGGSNYKLTF TRAV12-2*01 TRAJ53*01 CASSLTGTGNEQYF TRBV6-2*01,TRBV6-3*01 TRBJ2-7*01 HLA-A*02:01 B2M MHCI LLAGIGTVPI PGT HomoSapiens PMID:34811538 tetramer-sort yes amplicon-seq Naive T cells healthy healthy_7 chip0516_871524 PBMC +13777 CASSGDGMNTEAFF TRBV10-2*01 TRBJ1-1*01 HLA-A*02:01 B2M MHCI CLGGLLTMV LMP2A EBV PMID:34811538 tetramer-sort yes amplicon-seq effector memory T cells healthy healthy_6 chip0516_61109 PBMC +13778 CSARDRTGNGYTF TRBV20-1*01 TRBJ1-2*01 HLA-A*02:01 B2M MHCI GLCTLVAML BLMF1 EBV PMID:34811538 tetramer-sort yes amplicon-seq effector T cells healthy healthy_6 chip0516_701086 PBMC +13779 CILPLAGGTSYGKLTF TRAV26-2*01 TRAJ52*01 CASSLGQAYEQYF TRBV7-8*01 TRBJ2-7*01 HLA-B*08:01 B2M MHCI FLRGRAYGL EBNA3A EBV PMID:34811538 tetramer-sort yes amplicon-seq central memory T cells healthy healthy_8 chip0516_11785 PBMC +13780 CILPLAGGTSYGKLTF TRAV26-2*01 TRAJ52*01 CASSLGQAYEQYF TRBV7-8*01 TRBJ2-7*01 HLA-B*08:01 B2M MHCI FLRGRAYGL EBNA3A EBV PMID:34811538 tetramer-sort yes amplicon-seq effector memory T cells healthy healthy_8 chip0516_870630 PBMC +13781 CALASVgt?SYSTLAF TRAV6*01 TRAJ53*01 CASSPLGGADGYTF TRBV6-1*01 TRBJ1-2*01 HLA-A*02:01 B2M MHCI FLYALALLL LMP2 EBV PMID:34811538 tetramer-sort yes amplicon-seq central memory T cells healthy healthy_6 chip0516_120359 PBMC +13782 CAMSAAGANSKLTF TRAV12-3*01 TRAJ56*01 HLA-A*02:01 B2M MHCI LLSLFSLWL ZNT8 HomoSapiens PMID:34811538 tetramer-sort yes amplicon-seq transitional T cells between effector and memory populations healthy healthy_6 chip0516_675485 PBMC +13784 CAVALSSKSTF TRAV8-3*01 TRAJ27*01 CASSGDGMNTEAFF TRBV10-2*01 TRBJ1-1*01 HLA-A*02:01 B2M MHCI CLGGLLTMV LMP2A EBV PMID:34811538 tetramer-sort yes amplicon-seq effector memory T cells healthy healthy_6 chip0516_487353 PBMC +13785 CAATFYGGSQGNLIF TRAV29/DV5*01,TRAV13-1*01 TRAJ42*01 CASSTQTAPDDSQYF TRBV7-9*01 TRBJ2-3*01 HLA-B*08:01 B2M MHCI RAKFKQLL BZLF1 EBV PMID:34811538 tetramer-sort yes amplicon-seq effector memory T cells healthy healthy_8 chip0516_352160 PBMC +13786 CIVTLLAct?SSPGRLIF TRAV26-1*01 TRAJ37*01 HLA-A*02:01 B2M MHCI FLYALALLL LMP2 EBV PMID:34811538 tetramer-sort yes amplicon-seq central memory T cells healthy healthy_6 chip0516_451302 PBMC +13787 RALPCTa?tNNDLRF TRAV9-2*01 TRAJ43*01 CAISATDSYEQYF TRBV10-3*01 TRBJ2-7*01 HLA-A*02:01 B2M MHCI VLFGLGFAI IGRP HomoSapiens PMID:34811538 tetramer-sort yes amplicon-seq Naive T cells healthy healthy_7 chip0516_49285 PBMC +13788 CAVTLTLYSGAGSYQLTF TRAV21*01 TRAJ28*01 CASSLMGTGGLSEKLFF TRBV28*01 TRBJ1-4*01 HLA-B*08:01 B2M MHCI QAKWRLQTL EBNA3A EBV PMID:34811538 tetramer-sort yes amplicon-seq central memory T cells healthy healthy_8 chip0516_572985 PBMC +13789 CASSPGDRGRYEQYF TRBV4-3*01 TRBJ2-7*01 HLA-B*08:01 B2M MHCI ILKGKFQTA NP InfluenzaA PMID:34811538 tetramer-sort yes amplicon-seq Naive T cells healthy healthy_10 chip0516_660750 PBMC +13792 CASSGDGMNTEAFF TRBV10-2*01 TRBJ1-1*01 HLA-A*02:01 B2M MHCI CLGGLLTMV LMP2A EBV PMID:34811538 tetramer-sort yes amplicon-seq effector memory T cells healthy healthy_6 chip0516_714515 PBMC +13793 CVVNTGGFKTIF TRAV12-1*01 TRAJ9*01 CASSLDGTQAFF TRBV7-9*01 TRBJ1-1*01 HLA-B*08:01 B2M MHCI YLKDQQLL gp160 HIV-1 PMID:34811538 tetramer-sort yes amplicon-seq natural killer-like T cells healthy healthy_9 chip0516_557513 PBMC +13795 CAEGAQKLVF TRAV13-2*01 TRAJ54*01 HLA-B*08:01 B2M MHCI MALWMRLL INS HomoSapiens PMID:34811538 tetramer-sort yes amplicon-seq Naive T cells healthy healthy_8 chip0516_50119 PBMC +13798 CAVKGDTNAGKSTF TRAV12-2*01 TRAJ27*01 CASQGDYEQYF TRBV2*01 TRBJ2-7*01 HLA-B*08:01 B2M MHCI FLRGRAYGL EBNA3A EBV PMID:34811538 tetramer-sort yes amplicon-seq effector memory T cells healthy healthy_8 chip0516_739128 PBMC +13801 CSAREIVREGEKLFF TRBV20-1*01 TRBJ1-4*01 HLA-A*01:01 B2M MHCI ALASCMGLIY M1 InfluenzaA PMID:34811538 tetramer-sort yes amplicon-seq Naive T cells healthy healthy_9 chip0516_125738 PBMC +13805 CILPLAGGTSYGKLTF TRAV26-2*01 TRAJ52*01 CASSSGQAYEQYF TRBV7-8*01 TRBJ2-7*01 HLA-B*08:01 B2M MHCI FLRGRAYGL EBNA3A EBV PMID:34811538 tetramer-sort yes amplicon-seq effector memory T cells healthy healthy_8 chip0516_781133 PBMC +13806 CSVGTGGTNEKLFF TRBV29-1*01 TRBJ1-4*01 HLA-A*02:01 B2M MHCI GLCTLVAML BLMF1 EBV PMID:34811538 tetramer-sort yes amplicon-seq effector memory T cells healthy healthy_6 chip0516_361056 PBMC +13808 CILPPAGGTSYGKLTF TRAV26-2*01 TRAJ52*01 HLA-B*08:01 B2M MHCI FLRGRAYGL EBNA3A EBV PMID:34811538 tetramer-sort yes amplicon-seq effector memory T cells healthy healthy_8 chip0516_468921 PBMC +13809 CVASADKLIF TRAV12-1*01 TRAJ34*01 HLA-A*01:01 B2M MHCI CTELKLSDY NP InfluenzaA PMID:34811538 tetramer-sort yes amplicon-seq transitional T cells between effector and memory populations healthy healthy_8 chip0516_422401 PBMC +13812 CASTKRGGYEQFF TRBV6-2*01,TRBV6-3*01 TRBJ2-1*01 HLA-B*08:01 B2M MHCI ILKGKFQTA NP InfluenzaA PMID:34811538 tetramer-sort yes amplicon-seq Naive T cells healthy healthy_9 chip0516_292314 PBMC +13813 CSVGGSGTGKGYDGYTF TRBV29-1*01 TRBJ1-2*01 HLA-B*08:01 B2M MHCI RAKFKQLL BZLF1 EBV PMID:34811538 tetramer-sort yes amplicon-seq transitional T cells between effector and memory populations healthy healthy_8 chip0516_69278 PBMC +13816 CVVSLSNFGNEKLTF TRAV12-1*01 TRAJ48*01 HLA-A*02:01 B2M MHCI LLAGIGTVPI PGT HomoSapiens PMID:34811538 tetramer-sort yes amplicon-seq Naive T cells healthy healthy_7 chip0516_270856 PBMC +13817 CILPLAGGTSYGKLTF TRAV26-2*01 TRAJ52*01 CASSLGQAYEQYF TRBV7-8*01 TRBJ2-7*01 HLA-B*08:01 B2M MHCI FLRGRAYGL EBNA3A EBV PMID:34811538 tetramer-sort yes amplicon-seq effector memory T cells healthy healthy_8 chip0516_458997 PBMC +13818 SGGTSYGKLTF TRAV13-1*01 TRAJ52*01 CASRVDPGYGCTF TRBV9*01 TRBJ1-2*01 HLA-A*01:01 B2M MHCI CTELKLSDY NP InfluenzaA PMID:34811538 tetramer-sort yes amplicon-seq Naive T cells healthy healthy_9 chip0516_543524 PBMC +13819 CASSLPLWg?cRANQPQHF TRBV5-5*01 TRBJ1-5*01 HLA-A*01:01 B2M MHCI CTELKLSDY NP InfluenzaA PMID:34811538 tetramer-sort yes amplicon-seq Naive T cells healthy healthy_8 chip0516_378988 PBMC +13820 CAVGEKNTGFQKLVF TRAV1-1*01 TRAJ8*01 CASSASSGPKTQYF TRBV12-3*01,TRBV12-4*01 TRBJ2-5*01 HLA-A*02:01 B2M MHCI MLYQHLLPL INSDRIP HomoSapiens PMID:34811538 tetramer-sort yes amplicon-seq Naive T cells healthy healthy_7 chip0516_179333 PBMC +13821 CAEDHALNF TRAV23/DV6*01 TRAJ41*01 CASSSGQGDNEQFF TRBV11-3*01 TRBJ2-1*01 HLA-A*02:01 B2M MHCI GLCTLVAML BLMF1 EBV PMID:34811538 tetramer-sort yes amplicon-seq effector T cells healthy healthy_6 chip0516_501756 PBMC +13822 CALPLSNFGPENFTF TRAV12-3*01 TRAJ48*01 CASSLGQEQETQYF TRBV7-8*01 TRBJ2-5*01 HLA-A*02:01 B2M MHCI LLAGIGTVPI PGT HomoSapiens PMID:34811538 tetramer-sort yes amplicon-seq Naive T cells healthy healthy_6 chip0516_494493 PBMC +13823 CSASGGDRGATNEKLFF TRBV20-1*01 TRBJ1-4*01 HLA-A*02:01 B2M MHCI LLAGIGTVPI PGT HomoSapiens PMID:34811538 tetramer-sort yes amplicon-seq Naive T cells healthy healthy_7 chip0516_76416 PBMC +13826 CAMSDYGQNFVF TRAV12-3*01 TRAJ26*01 HLA-B*08:01 B2M MHCI YAYAKWKL ZNT8 HomoSapiens PMID:34811538 tetramer-sort yes amplicon-seq Naive T cells healthy healthy_8 chip0516_471582 PBMC +13827 CAVALSSKSPF TRAV8-3*01 TRAJ27*01 HLA-A*02:01 B2M MHCI CLGGLLTMV LMP2A EBV PMID:34811538 tetramer-sort yes amplicon-seq effector memory T cells healthy healthy_6 chip0516_639849 PBMC +13829 CIVRVRDGLTF TRAV26-1*01 TRAJ45*01 HLA-A*02:01 B2M MHCI GIIYIIYKL P3A CoxsackievirusB PMID:34811538 tetramer-sort yes amplicon-seq transitional T cells between effector and memory populations healthy healthy_6 chip0516_142317 PBMC +13831 CTVSDMEYGNKLVF TRAV8-6*01 TRAJ47*01 CASSLVVSPGGQIYEQYF TRBV11-3*01 TRBJ2-7*01 HLA-B*08:01 B2M MHCI RAKFKQLL BZLF1 EBV PMID:34811538 tetramer-sort yes amplicon-seq effector T cells healthy healthy_9 chip0516_592103 PBMC +13832 CASSGDGMNTEAFF TRBV10-2*01 TRBJ1-1*01 HLA-A*02:01 B2M MHCI CLGGLLTMV LMP2A EBV PMID:34811538 tetramer-sort yes amplicon-seq effector memory T cells healthy healthy_6 chip0516_100833 PBMC +13834 CYVPYKN??cY*KKMIF TRAV8-3*01 TRAJ50*01 HLA-A*01:01 B2M MHCI VTDAAHLLI ZNT8 HomoSapiens PMID:34811538 tetramer-sort yes amplicon-seq Naive T cells healthy healthy_8 chip0516_63530 PBMC +13837 CAVTLTLYSGAGRYQLTF TRAV21*01 TRAJ28*01 CASSLMGTGGLSEKLFF TRBV28*01 TRBJ1-4*01 HLA-B*08:01 B2M MHCI QAKWRLQTL EBNA3A EBV PMID:34811538 tetramer-sort yes amplicon-seq effector memory T cells healthy healthy_8 chip0516_418934 PBMC +13842 CSARDETGNGYTF TRBV20-1*01 TRBJ1-2*01 HLA-A*02:01 B2M MHCI GLCTLVAML BLMF1 EBV PMID:34811538 tetramer-sort yes amplicon-seq effector memory T cells healthy healthy_7 chip0516_337306 PBMC +13843 CAVALSSKSTF TRAV8-3*01 TRAJ27*01 HLA-A*02:01 B2M MHCI CLGGLLTMV LMP2A EBV PMID:34811538 tetramer-sort yes amplicon-seq effector memory T cells healthy healthy_6 chip0516_597332 PBMC +13844 CASSGDGMNTEAFF TRBV10-2*01 TRBJ1-1*01 HLA-A*02:01 B2M MHCI CLGGLLTMV LMP2A EBV PMID:34811538 tetramer-sort yes amplicon-seq effector memory T cells healthy healthy_6 chip0516_232217 PBMC +13845 CAVKGDTNAGKSTF TRAV12-2*01 TRAJ27*01 HLA-B*08:01 B2M MHCI FLRGRAYGL EBNA3A EBV PMID:34811538 tetramer-sort yes amplicon-seq effector memory T cells healthy healthy_8 chip0516_550788 PBMC +13846 CAGRFGNTPLVF TRAV35*01 TRAJ29*01 CASSQGAGGPGDEQFF TRBV4-1*01 TRBJ2-1*01 HLA-B*08:01 B2M MHCI NLIFKWIL G6PC2 HomoSapiens PMID:34811538 tetramer-sort yes amplicon-seq Naive T cells healthy healthy_8 chip0516_470172 PBMC +13848 CAVTLTLYSGAGSYQLTF TRAV21*01 TRAJ28*01 HLA-B*08:01 B2M MHCI QAKWRLQTL EBNA3A EBV PMID:34811538 tetramer-sort yes amplicon-seq effector memory T cells healthy healthy_8 chip0516_2595 PBMC +13850 CASSVLDGPRGKLFF TRBV19*01 TRBJ1-4*01 HLA-A*02:01 B2M MHCI GILGFVFTL M1 InfluenzaA PMID:34811538 tetramer-sort yes amplicon-seq transitional T cells between effector and memory populations healthy healthy_7 chip0516_483047 PBMC +13852 CILPLAGGTSYGKLTF TRAV26-2*01 TRAJ52*01 HLA-B*08:01 B2M MHCI FLRGRAYGL EBNA3A EBV PMID:34811538 tetramer-sort yes amplicon-seq effector memory T cells healthy healthy_8 chip0516_79216 PBMC +13853 CAVALSSKSTF TRAV8-3*01 TRAJ27*01 CASSGDGMNTEAFF TRBV10-2*01 TRBJ1-1*01 HLA-A*02:01 B2M MHCI CLGGLLTMV LMP2A EBV PMID:34811538 tetramer-sort yes amplicon-seq effector memory T cells healthy healthy_6 chip0516_732498 PBMC +13854 CAVKETSGSRLTF TRAV41*01 TRAJ10*01 CASTYSGRIANYGYTF TRBV7-9*01 TRBJ1-2*01 HLA-B*08:01 B2M MHCI RMMEYGTTM GAD2 HomoSapiens PMID:34811538 tetramer-sort yes amplicon-seq Naive T cells healthy healthy_8 chip0516_655438 PBMC +13855 CAVGEARLMF TRAV8-3*01 TRAJ31*01 HLA-B*08:01 B2M MHCI RAKFKQLL BZLF1 EBV PMID:34811538 tetramer-sort yes amplicon-seq effector memory T cells healthy healthy_9 chip0516_53168 PBMC +13857 CATDGGMRF TRAV17*01 TRAJ43*01 CASRREGGHGGTQYF TRBV7-2*01 TRBJ2-5*01 HLA-A*02:01 B2M MHCI KLVALGINAV NS3 HCV PMID:34811538 tetramer-sort yes amplicon-seq natural killer-like T cells healthy healthy_6 chip0516_789611 PBMC +13858 CAVLMDSNYQLIW TRAV21*01 TRAJ33*01 CASSGDGMNTEAFF TRBV10-2*01 TRBJ1-1*01 HLA-A*02:01 B2M MHCI CLGGLLTMV LMP2A EBV PMID:34811538 tetramer-sort yes amplicon-seq effector memory T cells healthy healthy_6 chip0516_55828 PBMC +13859 CAVALSSKSTF TRAV8-3*01 TRAJ27*01 CASSGDGMNTEAFF TRBV10-2*01 TRBJ1-1*01 HLA-A*02:01 B2M MHCI CLGGLLTMV LMP2A EBV PMID:34811538 tetramer-sort yes amplicon-seq effector memory T cells healthy healthy_6 chip0516_86371 PBMC +13860 CILPLAGGTSYGKLTF TRAV26-2*01 TRAJ52*01 CASRLGQAYEQSF TRBV7-8*01 TRBJ2-7*01 HLA-B*08:01 B2M MHCI FLRGRAYGL EBNA3A EBV PMID:34811538 tetramer-sort yes amplicon-seq effector memory T cells healthy healthy_8 chip0516_15899 PBMC +13861 CASSLGQAYEQYF TRBV7-8*01 TRBJ2-7*01 HLA-B*08:01 B2M MHCI FLRGRAYGL EBNA3A EBV PMID:34811538 tetramer-sort yes amplicon-seq effector memory T cells healthy healthy_8 chip0516_13519 PBMC +13862 CVVNQRRANNLFF TRAV12-1*01 TRAJ36*01 CSALGDRGLGGNQPQHF TRBV20-1*01 TRBJ1-5*01 HLA-A*02:01 B2M MHCI GLCTLVAML BLMF1 EBV PMID:34811538 tetramer-sort yes amplicon-seq effector memory T cells healthy healthy_6 chip0516_459817 PBMC +13863 CASSGDGMNTEAFF TRBV10-2*01 TRBJ1-1*01 HLA-A*02:01 B2M MHCI CLGGLLTMV LMP2A EBV PMID:34811538 tetramer-sort yes amplicon-seq effector memory T cells healthy healthy_6 chip0516_764612 PBMC +13864 CASSLGQAYEQYF TRBV7-8*01 TRBJ2-7*01 HLA-B*08:01 B2M MHCI FLRGRAYGL EBNA3A EBV PMID:34811538 tetramer-sort yes amplicon-seq effector memory T cells healthy healthy_8 chip0516_410675 PBMC +13865 CASSHHRDRGEAGELFF TRBV9*01 TRBJ2-2*01 HLA-B*08:01 B2M MHCI ELRSRYWAI NP InfluenzaA PMID:34811538 tetramer-sort yes amplicon-seq transitional T cells between effector and memory populations healthy healthy_9 chip0516_730889 PBMC +13868 CAVALSSKSTF TRAV8-3*01 TRAJ27*01 CASSGDGMNTEAFF TRBV10-2*01 TRBJ1-1*01 HLA-A*02:01 B2M MHCI CLGGLLTMV LMP2A EBV PMID:34811538 tetramer-sort yes amplicon-seq effector T cells healthy healthy_6 chip0516_310639 PBMC +13869 CASSLMGTGGLSEKLFF TRBV28*01 TRBJ1-4*01 HLA-B*08:01 B2M MHCI QAKWRLQTL EBNA3A EBV PMID:34811538 tetramer-sort yes amplicon-seq effector T cells healthy healthy_8 chip0516_522361 PBMC +13870 CAMAPANFGNEKLTF TRAV12-3*01 TRAJ48*01 HLA-A*02:01 B2M MHCI LLAGIGTVPI PGT HomoSapiens PMID:34811538 tetramer-sort yes amplicon-seq Naive T cells healthy healthy_6 chip0516_142382 PBMC +13873 CAVLMDSNYQLIW TRAV12-3*01 TRAJ33*01 HLA-A*02:01 B2M MHCI CLGGLLTMV LMP2A EBV PMID:34811538 tetramer-sort yes amplicon-seq effector memory T cells healthy healthy_6 chip0516_193517 PBMC +13874 CAVRGVSAGNMLTF TRAV1-2*01 TRAJ39*01 HLA-B*08:01 B2M MHCI ELRSRYWAI NP InfluenzaA PMID:34811538 tetramer-sort yes amplicon-seq transitional T cells between effector and memory populations healthy healthy_10 chip0516_745329 PBMC +13875 CILPLAGGTSYGKLTF TRAV26-2*01 TRAJ52*01 HLA-B*08:01 B2M MHCI FLRGRAYGL EBNA3A EBV PMID:34811538 tetramer-sort yes amplicon-seq effector memory T cells healthy healthy_8 chip0516_589068 PBMC +13876 CAMRERKRSNDYKLSF TRAV14/DV4*01 TRAJ20*01 HLA-A*02:01 B2M MHCI VIYQYMDDL POL HIV-1 PMID:34811538 tetramer-sort yes amplicon-seq Naive T cells healthy healthy_6 chip0516_802466 PBMC +13877 CILPLAGGTSYGKLTF TRAV26-2*01 TRAJ52*01 CASSSGQAYEQYF TRBV7-8*01 TRBJ2-7*01 HLA-B*08:01 B2M MHCI FLRGRAYGL EBNA3A EBV PMID:34811538 tetramer-sort yes amplicon-seq effector T cells healthy healthy_8 chip0516_789839 PBMC +13878 CAVKTDTNAGKSTF TRAV12-2*01 TRAJ27*01 HLA-B*08:01 B2M MHCI FLRGRAYGL EBNA3A EBV PMID:34811538 tetramer-sort yes amplicon-seq effector memory T cells healthy healthy_8 chip0516_209285 PBMC +13879 CASSGDGMNTEAFF TRBV10-2*01 TRBJ1-1*01 HLA-A*02:01 B2M MHCI CLGGLLTMV LMP2A EBV PMID:34811538 tetramer-sort yes amplicon-seq effector memory T cells healthy healthy_6 chip0516_22256 PBMC +13880 CIVTAGSYQLTF TRAV26-1*01 TRAJ28*01 CSVMTGASETQYF TRBV29-1*01 TRBJ2-5*01 HLA-A*02:01 B2M MHCI VAANIVLTV ZNT8 HomoSapiens PMID:34811538 tetramer-sort yes amplicon-seq Naive T cells healthy healthy_7 chip0516_152263 PBMC +13881 CASSGDGMNTEAFF TRBV10-2*01 TRBJ1-1*01 HLA-A*02:01 B2M MHCI CLGGLLTMV LMP2A EBV PMID:34811538 tetramer-sort yes amplicon-seq effector memory T cells healthy healthy_6 chip0516_532771 PBMC +13882 CAYRSEGNKLVF TRAV38-2/DV8*01 TRAJ47*01 HLA-B*08:01 B2M MHCI RAKFKQLL BZLF1 EBV PMID:34811538 tetramer-sort yes amplicon-seq transitional T cells between effector and memory populations healthy healthy_8 chip0516_237329 PBMC +13883 CASSLGQAYEQYF TRBV7-8*01 TRBJ2-7*01 HLA-B*08:01 B2M MHCI FLRGRAYGL EBNA3A EBV PMID:34811538 tetramer-sort yes amplicon-seq central memory T cells healthy healthy_8 chip0516_458878 PBMC +13884 CAVRPSPSGNTPLVF TRAV8-4*01 TRAJ29*01 CASSQVLAGGNEQFF TRBV4-1*01 TRBJ2-1*01 HLA-B*08:01 B2M MHCI YLKDQQLL gp160 HIV-1 PMID:34811538 tetramer-sort yes amplicon-seq Naive T cells healthy healthy_8 chip0516_475894 PBMC +13885 CAVTLTLYSGAGSYQLTF TRAV21*01 TRAJ28*01 CASSLMGTGGLSEKLFF TRBV28*01 TRBJ1-4*01 HLA-B*08:01 B2M MHCI QAKWRLQTL EBNA3A EBV PMID:34811538 tetramer-sort yes amplicon-seq central memory T cells healthy healthy_8 chip0516_67277 PBMC +13886 CASSGDGMNTEAFF TRBV10-2*01 TRBJ1-1*01 HLA-A*02:01 B2M MHCI CLGGLLTMV LMP2A EBV PMID:34811538 tetramer-sort yes amplicon-seq effector memory T cells healthy healthy_6 chip0516_33188 PBMC +13887 CASSQDGVPGGNEQYF TRBV4-1*01 TRBJ2-7*01 HLA-A*01:01 B2M MHCI CTELKLSDY NP InfluenzaA PMID:34811538 tetramer-sort yes amplicon-seq transitional T cells between effector and memory populations healthy healthy_8 chip0516_612850 PBMC +13888 CAVKAGYSTLTF TRAV12-2*01 TRAJ11*01 CASSVGQNTEAFF TRBV9*01 TRBJ1-1*01 HLA-B*08:01 B2M MHCI LLNVKLAL GFAP HomoSapiens PMID:34811538 tetramer-sort yes amplicon-seq Naive T cells healthy healthy_8 chip0516_529623 PBMC +13889 CAAAHRETSGSRLTF TRAV25*01 TRAJ10*01 HLA-B*08:01 B2M MHCI YAYAKWKL ZNT8 HomoSapiens PMID:34811538 tetramer-sort yes amplicon-seq Naive T cells healthy healthy_8 chip0516_76702 PBMC +13890 CILPLAGGTSYGKLTF TRAV26-2*01 TRAJ52*01 HLA-B*08:01 B2M MHCI FLRGRAYGL EBNA3A EBV PMID:34811538 tetramer-sort yes amplicon-seq effector memory T cells healthy healthy_8 chip0516_481221 PBMC +13891 CAMRtg??ccSLLF TRAV14/DV4*01 TRAJ31*01 HLA-B*08:01 B2M MHCI FLRGRAYGL EBNA3A EBV PMID:34811538 tetramer-sort yes amplicon-seq effector memory T cells healthy healthy_8 chip0516_361382 PBMC +13893 CILPLAGGTSYGKLTF TRAV26-2*01 TRAJ52*01 CASSLGQAYEQYF TRBV7-8*01 TRBJ2-7*01 HLA-B*08:01 B2M MHCI FLRGRAYGL EBNA3A EBV PMID:34811538 tetramer-sort yes amplicon-seq effector memory T cells healthy healthy_8 chip0516_565320 PBMC +13895 CASSDSVGFNSPLHF TRBV6-4*01 TRBJ1-6*01 HLA-B*08:01 B2M MHCI FLRGRAYGL EBNA3A EBV PMID:34811538 tetramer-sort yes amplicon-seq effector memory T cells healthy healthy_8 chip0516_732658 PBMC +13896 CAWRNGPSYNEQFF TRBV30*01 TRBJ2-1*01 HLA-A*02:01 B2M MHCI YVLDHLIVV BRLF1 EBV PMID:34811538 tetramer-sort yes amplicon-seq effector memory T cells healthy healthy_7 chip0516_703873 PBMC +13898 CASSGDGMNTEAFF TRBV10-2*01 TRBJ1-1*01 HLA-A*02:01 B2M MHCI CLGGLLTMV LMP2A EBV PMID:34811538 tetramer-sort yes amplicon-seq effector memory T cells healthy healthy_6 chip0516_358164 PBMC +13899 CILPLAGGTSYGKLTF TRAV26-2*01 TRAJ52*01 CASSSGQAYEQYF TRBV7-8*01 TRBJ2-7*01 HLA-B*08:01 B2M MHCI FLRGRAYGL EBNA3A EBV PMID:34811538 tetramer-sort yes amplicon-seq transitional T cells between effector and memory populations healthy healthy_8 chip0516_255364 PBMC +13900 CAVTLTLYSGAGSYQLTF TRAV21*01 TRAJ28*01 CASSLMGTGGLSEKLFF TRBV28*01 TRBJ1-4*01 HLA-B*08:01 B2M MHCI QAKWRLQTL EBNA3A EBV PMID:34811538 tetramer-sort yes amplicon-seq effector memory T cells healthy healthy_8 chip0516_714455 PBMC +13901 CAARLEga?GADELTF TRAV13-1*01 TRAJ45*01 HLA-A*01:01 B2M MHCI GSHLVEALY INS HomoSapiens PMID:34811538 tetramer-sort yes amplicon-seq transitional T cells between effector and memory populations healthy healthy_8 chip0516_297651 PBMC +13902 CASSEADAYEQYF TRBV2*01 TRBJ2-7*01 HLA-B*08:01 B2M MHCI QAKWRLQTL EBNA3A EBV PMID:34811538 tetramer-sort yes amplicon-seq Naive T cells healthy healthy_9 chip0516_864595 PBMC +13903 CAVALSSKSTF TRAV8-3*01 TRAJ27*01 CASSLGQAYEQYF TRBV7-8*01 TRBJ2-7*01 HLA-A*02:01 B2M MHCI CLGGLLTMV LMP2A EBV PMID:34811538 tetramer-sort yes amplicon-seq effector memory T cells healthy healthy_6 chip0516_622315 PBMC +13904 CASSDSIGFNSPLHF TRBV6-4*01 TRBJ1-6*01 HLA-B*08:01 B2M MHCI FLRGRAYGL EBNA3A EBV PMID:34811538 tetramer-sort yes amplicon-seq effector memory T cells healthy healthy_8 chip0516_483005 PBMC +13905 CILPLAGGTSYGKLTF TRAV26-2*01 TRAJ52*01 HLA-B*08:01 B2M MHCI FLRGRAYGL EBNA3A EBV PMID:34811538 tetramer-sort yes amplicon-seq effector memory T cells healthy healthy_8 chip0516_330382 PBMC +13906 CASSGDGMNTEAFF TRBV10-2*01 TRBJ1-1*01 HLA-A*02:01 B2M MHCI CLGGLLTMV LMP2A EBV PMID:34811538 tetramer-sort yes amplicon-seq effector memory T cells healthy healthy_6 chip0516_173839 PBMC +13907 CALSEIYGGATNKLIF TRAV19*01 TRAJ32*01 CASMGSSYNSPLHF TRBV19*01 TRBJ1-6*01 HLA-A*02:01 B2M MHCI LLFNILGGWV NS4B HCV PMID:34811538 tetramer-sort yes amplicon-seq Naive T cells healthy healthy_7 chip0516_758868 PBMC +13908 CILPLAGGTSYGKLTF TRAV26-2*01 TRAJ52*01 CASSSGQAYEQYF TRBV7-8*01 TRBJ2-7*01 HLA-B*08:01 B2M MHCI FLRGRAYGL EBNA3A EBV PMID:34811538 tetramer-sort yes amplicon-seq effector T cells healthy healthy_8 chip0516_539002 PBMC +13909 CAVTLTLYSGAGSYQLTF TRAV21*01,TRAV36/DV7*01 TRAJ28*01 CASSLMGTGGLSEKLFF TRBV28*01 TRBJ1-4*01 HLA-B*08:01 B2M MHCI QAKWRLQTL EBNA3A EBV PMID:34811538 tetramer-sort yes amplicon-seq effector memory T cells healthy healthy_8 chip0516_305182 PBMC +13911 CASSGDGMNTEAFF TRBV10-1*01 TRBJ1-1*01 HLA-A*02:01 B2M MHCI CLGGLLTMV LMP2A EBV PMID:34811538 tetramer-sort yes amplicon-seq effector memory T cells healthy healthy_6 chip0516_744543 PBMC +13912 CAVEGGNEKLTF TRAV39*01 TRAJ48*01 CSANQLSGRASYEQYF TRBV20-1*01 TRBJ2-7*01 HLA-A*02:01 B2M MHCI LALWGPDPAA INS HomoSapiens PMID:34811538 tetramer-sort yes amplicon-seq Naive T cells healthy healthy_7 chip0516_730241 PBMC +13913 CASSLGQAYEQYF TRBV7-8*01 TRBJ2-7*01 HLA-B*08:01 B2M MHCI FLRGRAYGL EBNA3A EBV PMID:34811538 tetramer-sort yes amplicon-seq effector memory T cells healthy healthy_8 chip0516_233501 PBMC +13915 CATDARNQGGKLIF TRAV17*01 TRAJ23*01 HLA-A*02:01 B2M MHCI ELAEYLYNI GAD65 HomoSapiens PMID:34811538 tetramer-sort yes amplicon-seq Naive T cells healthy healthy_7 chip0516_13129 PBMC +13916 CILPLAGGTSYGKLTF TRAV26-2*01 TRAJ52*01 CASSLGQAYEQYF TRBV7-8*01 TRBJ2-7*01 HLA-B*08:01 B2M MHCI FLRGRAYGL EBNA3A EBV PMID:34811538 tetramer-sort yes amplicon-seq effector T cells healthy healthy_8 chip0516_496345 PBMC +13918 CASSWGTGDEQYF TRBV7-8*01 TRBJ2-7*01 HLA-A*02:01 B2M MHCI LLSLFSLWL ZNT8 HomoSapiens PMID:34811538 tetramer-sort yes amplicon-seq transitional T cells between effector and memory populations healthy healthy_6 chip0516_23200 PBMC +13919 CASSDDGMNTEAFF TRBV10-2*01 TRBJ1-1*01 HLA-A*02:01 B2M MHCI CLGGLLTMV LMP2A EBV PMID:34811538 tetramer-sort yes amplicon-seq effector memory T cells healthy healthy_7 chip0516_689872 PBMC +13921 CILPLAGGTSYGKLTF TRAV26-2*01 TRAJ52*01 HLA-B*08:01 B2M MHCI FLRGRAYGL EBNA3A EBV PMID:34811538 tetramer-sort yes amplicon-seq effector memory T cells healthy healthy_8 chip0516_236287 PBMC +13923 CAESSADSNYQLIW TRAV5*01 TRAJ33*01 HLA-B*08:01 B2M MHCI QAKWRLQTL EBNA3A EBV PMID:34811538 tetramer-sort yes amplicon-seq transitional T cells between effector and memory populations healthy healthy_8 chip0516_699132 PBMC +13924 CVVVSGGSYIPTF TRAV12-1*01 TRAJ6*01 HLA-B*08:01 B2M MHCI YAYAKWKL ZNT8 HomoSapiens PMID:34811538 tetramer-sort yes amplicon-seq Naive T cells healthy healthy_8 chip0516_677978 PBMC +13926 CASSSGQAYEQYF TRBV7-8*01 TRBJ2-7*01 HLA-B*08:01 B2M MHCI FLRGRAYGL EBNA3A EBV PMID:34811538 tetramer-sort yes amplicon-seq effector memory T cells healthy healthy_8 chip0516_194223 PBMC +13929 CASSYQGGNYGYTF TRBV6-5*01 TRBJ1-2*01 HLA-A*02:01 B2M MHCI FLYALALLL LMP2 EBV PMID:34811538 tetramer-sort yes amplicon-seq central memory T cells healthy healthy_7 chip0516_631958 PBMC +13930 CILPLAGGSRYGKLTF TRAV26-2*01 TRAJ52*01 CASSLGQAYEQYF TRBV7-8*01 TRBJ2-7*01 HLA-B*08:01 B2M MHCI FLRGRAYGL EBNA3A EBV PMID:34811538 tetramer-sort yes amplicon-seq transitional T cells between effector and memory populations healthy healthy_8 chip0516_355018 PBMC +13932 CAVSPLTLNNDMRF TRAV8-6*01 TRAJ43*01 CASSLGGREAFF TRBV7-9*01 TRBJ1-1*01 HLA-B*08:01 B2M MHCI FLRGRAYGL EBNA3A EBV PMID:34811538 tetramer-sort yes amplicon-seq Naive T cells healthy healthy_8 chip0516_864621 PBMC +13933 CAVALSSKSTF TRAV8-3*01 TRAJ27*01 CASSGDGMNTEAFF TRBV10-2*01 TRBJ1-1*01 HLA-A*02:01 B2M MHCI CLGGLLTMV LMP2A EBV PMID:34811538 tetramer-sort yes amplicon-seq effector memory T cells healthy healthy_6 chip0516_350704 PBMC +13934 CASSLGTSGGYEQFF TRBV11-1*01 TRBJ2-1*01 HLA-B*08:01 B2M MHCI ILKGKFQTA NP InfluenzaA PMID:34811538 tetramer-sort yes amplicon-seq transitional T cells between effector and memory populations healthy healthy_8 chip0516_851761 PBMC +13935 CATVPNYGGSQGNLIF TRAV17*01 TRAJ42*01 CASRTQTGPNEQFF TRBV6-1*01 TRBJ2-1*01 HLA-A*02:01 B2M MHCI LLSILCIWV ZNT8 HomoSapiens PMID:34811538 tetramer-sort yes amplicon-seq Naive T cells healthy healthy_7 chip0516_251070 PBMC +13936 CASSLGTSGGYEQYF TRBV11-1*01 TRBJ2-7*01 HLA-B*08:01 B2M MHCI ILKGKFQTA NP InfluenzaA PMID:34811538 tetramer-sort yes amplicon-seq transitional T cells between effector and memory populations healthy healthy_9 chip0516_200248 PBMC +13938 CILPLAGGTSYGKLTF TRAV26-2*01 TRAJ52*01 CASSSGQAYEQYF TRBV7-8*01 TRBJ2-7*01 HLA-B*08:01 B2M MHCI FLRGRAYGL EBNA3A EBV PMID:34811538 tetramer-sort yes amplicon-seq effector memory T cells healthy healthy_8 chip0516_719456 PBMC +13940 CSAREGDGGAWETQYF TRBV20-1*01 TRBJ2-5*01 HLA-B*08:01 B2M MHCI YLKTNLFL G6PC2 HomoSapiens PMID:34811538 tetramer-sort yes amplicon-seq Naive T cells healthy healthy_8 chip0516_764307 PBMC +13943 CAVALSSKSTF TRAV8-3*01 TRAJ27*01 HLA-A*02:01 B2M MHCI CLGGLLTMV LMP2A EBV PMID:34811538 tetramer-sort yes amplicon-seq central memory T cells healthy healthy_6 chip0516_290231 PBMC +13945 CAVALSSKSTF TRAV8-3*01 TRAJ27*01 HLA-A*02:01 B2M MHCI CLGGLLTMV LMP2A EBV PMID:34811538 tetramer-sort yes amplicon-seq effector memory T cells healthy healthy_6 chip0516_879273 PBMC +13946 CASSGDGMNTEAFF TRBV10-2*01 TRBJ1-1*01 HLA-A*02:01 B2M MHCI CLGGLLTMV LMP2A EBV PMID:34811538 tetramer-sort yes amplicon-seq effector memory T cells healthy healthy_6 chip0516_662364 PBMC +13947 CILPLAGDTSYGKLTF TRAV26-2*01 TRAJ52*01 HLA-B*08:01 B2M MHCI FLRGRAYGL EBNA3A EBV PMID:34811538 tetramer-sort yes amplicon-seq effector memory T cells healthy healthy_8 chip0516_693138 PBMC +13948 CAEDHALNF TRAV23/DV6*01 TRAJ41*01 CASSSGQGDNEQFF TRBV11-3*01 TRBJ2-1*01 HLA-A*02:01 B2M MHCI GLCTLVAML BLMF1 EBV PMID:34811538 tetramer-sort yes amplicon-seq effector T cells healthy healthy_6 chip0516_470998 PBMC +13949 CASSGDGMNTEAFF TRBV10-2*01 TRBJ1-1*01 HLA-A*02:01 B2M MHCI CLGGLLTMV LMP2A EBV PMID:34811538 tetramer-sort yes amplicon-seq effector memory T cells healthy healthy_6 chip0516_222648 PBMC +13950 CILPLAGGTSYGKLTF TRAV26-2*01 TRAJ52*01 CASSSRQAYEQYF TRBV7-8*01 TRBJ2-7*01 HLA-B*08:01 B2M MHCI FLRGRAYGL EBNA3A EBV PMID:34811538 tetramer-sort yes amplicon-seq effector memory T cells healthy healthy_8 chip0516_276174 PBMC +13951 CSVPSRITYEQYF TRBV20-1*01 TRBJ2-7*01 HLA-A*01:01 B2M MHCI CTELKLSDY NP InfluenzaA PMID:34811538 tetramer-sort yes amplicon-seq Naive T cells healthy healthy_9 chip0516_181603 PBMC +13953 CASSSGQGDNEQFF TRBV11-3*01 TRBJ2-1*01 HLA-A*02:01 B2M MHCI GLCTLVAML BLMF1 EBV PMID:34811538 tetramer-sort yes amplicon-seq effector memory T cells healthy healthy_6 chip0516_116573 PBMC +13954 CAVALSSKSTF TRAV8-3*01 TRAJ27*01 CASNGDGMNTEAFF TRBV10-2*01 TRBJ1-1*01 HLA-A*02:01 B2M MHCI CLGGLLTMV LMP2A EBV PMID:34811538 tetramer-sort yes amplicon-seq effector T cells healthy healthy_6 chip0516_73623 PBMC +13955 CASSGDGMNTEAFF TRBV10-2*01 TRBJ1-1*01 HLA-A*02:01 B2M MHCI CLGGLLTMV LMP2A EBV PMID:34811538 tetramer-sort yes amplicon-seq effector memory T cells healthy healthy_6 chip0516_47665 PBMC +13956 CASIRYNEQFF TRBV6-1*01 TRBJ2-1*01 HLA-A*02:01 B2M MHCI LLSLFSLWL ZNT8 HomoSapiens PMID:34811538 tetramer-sort yes amplicon-seq Naive T cells healthy healthy_7 chip0516_305491 PBMC +13957 CAGQLDNTDKLIF TRAV35*01 TRAJ34*01 CASSLDLANPETQYF TRBV5-1*01 TRBJ2-5*01 HLA-B*08:01 B2M MHCI RAKFKQLL BZLF1 EBV PMID:34811538 tetramer-sort yes amplicon-seq transitional T cells between effector and memory populations healthy healthy_8 chip0516_353564 PBMC +13958 CASSGDGMNTEAFF TRBV10-2*01 TRBJ1-1*01 HLA-A*02:01 B2M MHCI CLGGLLTMV LMP2A EBV PMID:34811538 tetramer-sort yes amplicon-seq effector memory T cells healthy healthy_6 chip0516_161802 PBMC +13959 CAVSDTDKLIF TRAV8-1*01 TRAJ34*01 CASRGLVGSAGELFF TRBV19*01 TRBJ2-2*01 HLA-A*02:01 B2M MHCI YVLDHLIVV BRLF1 EBV PMID:34811538 tetramer-sort yes amplicon-seq effector memory T cells healthy healthy_6 chip0516_875974 PBMC +13961 CASSPRTFQYF TRBV28*01 TRBJ2-7*01 HLA-A*02:01 B2M MHCI TLLANVTAV VP6 RotavirusA PMID:34811538 tetramer-sort yes amplicon-seq transitional T cells between effector and memory populations healthy healthy_6 chip0516_23053 PBMC +13963 CASSLGQAYEQYF TRBV7-8*01 TRBJ2-7*01 HLA-B*08:01 B2M MHCI FLRGRAYGL EBNA3A EBV PMID:34811538 tetramer-sort yes amplicon-seq effector memory T cells healthy healthy_8 chip0516_434085 PBMC +13964 CASSSSALISDEQFF TRBV11-2*01 TRBJ2-1*01 HLA-A*02:01 B2M MHCI YVLDHLIVV BRLF1 EBV PMID:34811538 tetramer-sort yes amplicon-seq effector memory T cells healthy healthy_6 chip0516_269185 PBMC +13965 CAVRDRNYGQNFVF TRAV3*01 TRAJ26*01 CSARDEGPYEQYF TRBV20-1*01 TRBJ2-7*01 HLA-B*08:01 B2M MHCI YAYAKWKL ZNT8 HomoSapiens PMID:34811538 tetramer-sort yes amplicon-seq Naive T cells healthy healthy_8 chip0516_405649 PBMC +13966 CASSLGQAYEQYF TRBV7-8*01 TRBJ2-7*01 HLA-B*08:01 B2M MHCI FLRGRAYGL EBNA3A EBV PMID:34811538 tetramer-sort yes amplicon-seq effector memory T cells healthy healthy_8 chip0516_160903 PBMC +13969 CILPLAGGTRYGKLTF TRAV26-2*01 TRAJ52*01 CASSLGQAYEQYF TRBV7-8*01 TRBJ2-7*01 HLA-B*08:01 B2M MHCI FLRGRAYGL EBNA3A EBV PMID:34811538 tetramer-sort yes amplicon-seq effector memory T cells healthy healthy_10 chip0516_567366 PBMC +13970 CAFNTGNQFYS TRAV24*01 TRAJ49*01 HLA-A*02:01 B2M MHCI LNIDLLWSV IGRP HomoSapiens PMID:34811538 tetramer-sort yes amplicon-seq Naive T cells healthy healthy_7 chip0516_336188 PBMC +13971 CSAVDRYSYEQYF TRBV20-1*01 TRBJ2-7*01 HLA-A*01:01 B2M MHCI CTELKLSDY NP InfluenzaA PMID:34811538 tetramer-sort yes amplicon-seq transitional T cells between effector and memory populations healthy healthy_9 chip0516_198873 PBMC +13973 CASSHGNYGYTF TRBV5-1*01 TRBJ1-2*01 HLA-A*02:01 B2M MHCI ALAGIGILTV MART1 HomoSapiens PMID:34811538 tetramer-sort yes amplicon-seq effector T cells healthy healthy_7 chip0516_645222 PBMC +13974 CASSSTSPGDTEAFF TRBV7-9*01 TRBJ1-1*01 HLA-B*08:01 B2M MHCI RAKFKQLL BZLF1 EBV PMID:34811538 tetramer-sort yes amplicon-seq transitional T cells between effector and memory populations healthy healthy_8 chip0516_306004 PBMC +13975 CILPLAGGTSYGKLTF TRAV26-2*01 TRAJ52*01 CASSSGQAYEQYF TRBV7-8*01 TRBJ2-7*01 HLA-B*08:01 B2M MHCI FLRGRAYGL EBNA3A EBV PMID:34811538 tetramer-sort yes amplicon-seq effector T cells healthy healthy_8 chip0516_778295 PBMC +13977 CASSGDGMNTEAFF TRBV10-2*01 TRBJ1-1*01 HLA-A*02:01 B2M MHCI CLGGLLTMV LMP2A EBV PMID:34811538 tetramer-sort yes amplicon-seq effector memory T cells healthy healthy_6 chip0516_320144 PBMC +13978 CAMSLSNFGNEKLTF TRAV12-3*01 TRAJ48*01 CASSPGGGEETQYF TRBV25-1*01 TRBJ2-5*01 HLA-A*02:01 B2M MHCI LLAGIGTVPI PGT HomoSapiens PMID:34811538 tetramer-sort yes amplicon-seq Naive T cells healthy healthy_6 chip0516_231971 PBMC +13979 CASSYQGGKAGYTF TRBV6-5*01 TRBJ1-2*01 HLA-A*02:01 B2M MHCI FLYALALLL LMP2 EBV PMID:34811538 tetramer-sort yes amplicon-seq effector memory T cells healthy healthy_6 chip0516_809971 PBMC +13981 CAVALSSKSTF TRAV8-3*01 TRAJ27*01 CASSGDGMNTEAFF TRBV10-2*01 TRBJ1-1*01 HLA-A*02:01 B2M MHCI CLGGLLTMV LMP2A EBV PMID:34811538 tetramer-sort yes amplicon-seq effector memory T cells healthy healthy_6 chip0516_560338 PBMC +13985 CASRPLSGSGETQYF TRBV28*01 TRBJ2-5*01 HLA-A*02:01 B2M MHCI YVLDHLIVV BRLF1 EBV PMID:34811538 tetramer-sort yes amplicon-seq effector T cells healthy healthy_6 chip0516_551328 PBMC +13986 CASSHPSGQGLYSNQPQHF TRBV19*01 TRBJ1-5*01 HLA-A*01:01 B2M MHCI CTELKLSDY NP InfluenzaA PMID:34811538 tetramer-sort yes amplicon-seq transitional T cells between effector and memory populations healthy healthy_10 chip0516_239873 PBMC +13987 CILPLTGGTSSGLLTF TRAV26-2*01 TRAJ52*01 CASSLGQAYEQYF TRBV7-8*01 TRBJ2-7*01 HLA-B*08:01 B2M MHCI FLRGRAYGL EBNA3A EBV PMID:34811538 tetramer-sort yes amplicon-seq effector memory T cells healthy healthy_8 chip0516_762826 PBMC +13988 CASSPPYNEQFF TRBV7-8*01 TRBJ2-1*01 HLA-A*02:01 B2M MHCI LLSLFSLWL ZNT8 HomoSapiens PMID:34811538 tetramer-sort yes amplicon-seq transitional T cells between effector and memory populations healthy healthy_6 chip0516_403726 PBMC +13989 CILPLAGGTSYGKLTF TRAV26-2*01 TRAJ52*01 CASSLGQAYEQYF TRBV7-8*01 TRBJ2-7*01 HLA-B*08:01 B2M MHCI FLRGRAYGL EBNA3A EBV PMID:34811538 tetramer-sort yes amplicon-seq effector memory T cells healthy healthy_8 chip0516_503752 PBMC +13990 CASSYLAGGLQETQYF TRBV6-5*01 TRBJ2-5*01 HLA-B*08:01 B2M MHCI FLKEKGGL Nef HIV-1 PMID:34811538 tetramer-sort yes amplicon-seq Naive T cells healthy healthy_8 chip0516_398719 PBMC +13991 CAVALSSKSTF TRAV8-3*01 TRAJ27*01 HLA-A*02:01 B2M MHCI CLGGLLTMV LMP2A EBV PMID:34811538 tetramer-sort yes amplicon-seq effector memory T cells healthy healthy_6 chip0516_56917 PBMC +13992 CSASRTAMNTEAFF TRBV20-1*01 TRBJ1-1*01 HLA-A*02:01 B2M MHCI ALAGIGILTV MART1 HomoSapiens PMID:34811538 tetramer-sort yes amplicon-seq Naive T cells healthy healthy_6 chip0516_229477 PBMC +13994 CVVSDRNFNKFYF TRAV8-2*01 TRAJ21*01 CAIANGQGPGADTQYF TRBV10-3*01 TRBJ2-3*01 HLA-A*01:01 B2M MHCI CTELKLSDY NP InfluenzaA PMID:34811538 tetramer-sort yes amplicon-seq transitional T cells between effector and memory populations healthy healthy_9 chip0516_841733 PBMC +13995 CVVSPANQAGTALIF TRAV10*01 TRAJ15*01 HLA-B*08:01 B2M MHCI CPLSKILL LMP2A EBV PMID:34811538 tetramer-sort yes amplicon-seq Naive T cells healthy healthy_8 chip0516_427384 PBMC +13996 CILPLAGGTSYGKLTF TRAV26-2*01 TRAJ52*01 CASSLGQAYEQYF TRBV7-8*01 TRBJ2-7*01 HLA-B*08:01 B2M MHCI FLRGRAYGL EBNA3A EBV PMID:34811538 tetramer-sort yes amplicon-seq effector memory T cells healthy healthy_8 chip0516_495002 PBMC +13998 CAVTLTLYSGAGSYQLTF TRAV21*01 TRAJ28*01 HLA-B*08:01 B2M MHCI QAKWRLQTL EBNA3A EBV PMID:34811538 tetramer-sort yes amplicon-seq effector memory T cells healthy healthy_8 chip0516_312074 PBMC +13999 CASRGLVGSAGELFF TRBV19*01 TRBJ2-2*01 HLA-A*02:01 B2M MHCI YVLDHLIVV BRLF1 EBV PMID:34811538 tetramer-sort yes amplicon-seq effector memory T cells healthy healthy_6 chip0516_856498 PBMC +14000 CILPLAGGTSYGKLTF TRAV26-2*01 TRAJ52*01 CASSLGQAYEQYF TRBV7-8*01 TRBJ2-7*01 HLA-B*08:01 B2M MHCI FLRGRAYGL EBNA3A EBV PMID:34811538 tetramer-sort yes amplicon-seq effector memory T cells healthy healthy_8 chip0516_603740 PBMC +14001 CASSEYPADEAFF TRBV9*01 TRBJ1-1*01 HLA-B*08:01 B2M MHCI ALKCKGFHV NP InfluenzaA PMID:34811538 tetramer-sort yes amplicon-seq Naive T cells healthy healthy_9 chip0516_407720 PBMC +14002 CALTSYGQNFVF TRAV12-2*01 TRAJ26*01 CASSQDWNTLNNYGHTF TRBV3-1*01 TRBJ1-2*01 HLA-B*08:01 B2M MHCI RPIIRPATL NP InfluenzaA PMID:34811538 tetramer-sort yes amplicon-seq transitional T cells between effector and memory populations healthy healthy_8 chip0516_572161 PBMC +14003 CIVRLLAct?SKTGRLIF TRAV26-1*01 TRAJ37*01 HLA-A*02:01 B2M MHCI FLYALALLL LMP2 EBV PMID:34811538 tetramer-sort yes amplicon-seq effector memory T cells healthy healthy_6 chip0516_396207 PBMC +14004 CAVLMDSNYQLIW TRAV21*01 TRAJ33*01 CASSGDGMNTEAFF TRBV10-2*01 TRBJ1-1*01 HLA-A*02:01 B2M MHCI CLGGLLTMV LMP2A EBV PMID:34811538 tetramer-sort yes amplicon-seq effector memory T cells healthy healthy_6 chip0516_39096 PBMC +14006 CASSGDGMNTEAFF TRBV10-2*01 TRBJ1-1*01 HLA-A*02:01 B2M MHCI CLGGLLTMV LMP2A EBV PMID:34811538 tetramer-sort yes amplicon-seq effector memory T cells healthy healthy_6 chip0516_617449 PBMC +14007 CATEGDSGYSTLTF TRAV17*01 TRAJ11*01 HLA-A*02:01 B2M MHCI FLYALALLL LMP2 EBV PMID:34811538 tetramer-sort yes amplicon-seq effector memory T cells healthy healthy_6 chip0516_428647 PBMC +14008 CAALSNDYKLSF TRAV12-2*01 TRAJ20*01 HLA-A*01:01 B2M MHCI LTSLTILQLY G6PC2 HomoSapiens PMID:34811538 tetramer-sort yes amplicon-seq Naive T cells healthy healthy_10 chip0516_384519 PBMC +14010 CAISESMAGGAAIEQFF TRBV10-3*01 TRBJ2-1*01 HLA-A*01:01 B2M MHCI HSNLNDATY NP InfluenzaA PMID:34811538 tetramer-sort yes amplicon-seq transitional T cells between effector and memory populations healthy healthy_9 chip0516_571585 PBMC +14011 CILPLAGGTSYGKLTF TRAV26-2*01 TRAJ52*01 HLA-B*08:01 B2M MHCI FLRGRAYGL EBNA3A EBV PMID:34811538 tetramer-sort yes amplicon-seq effector memory T cells healthy healthy_8 chip0516_170273 PBMC +14012 CAAKASNPFYF TRAV29/DV5*01 TRAJ49*01 CASSLSPRHAGGCTL TRBV5-6*01 TRBJ1-2*01 HLA-B*08:01 B2M MHCI WPTVRERM Nef HIV-1 PMID:34811538 tetramer-sort yes amplicon-seq Naive T cells healthy healthy_8 chip0516_392017 PBMC +14013 CILPLAGGTSYGKLTF TRAV26-2*01 TRAJ52*01 CASSSGQAYEQYF TRBV7-8*01 TRBJ2-7*01 HLA-B*08:01 B2M MHCI FLRGRAYGL EBNA3A EBV PMID:34811538 tetramer-sort yes amplicon-seq effector T cells healthy healthy_8 chip0516_11742 PBMC +14014 CILPLAGGTSYGKLTF TRAV26-2*01 TRAJ52*01 HLA-B*08:01 B2M MHCI FLRGRAYGL EBNA3A EBV PMID:34811538 tetramer-sort yes amplicon-seq effector memory T cells healthy healthy_8 chip0516_126650 PBMC +14016 CAVSRGGGNKLTF TRAV12-2*01 TRAJ10*01 HLA-A*02:01 B2M MHCI LLAGIGTVPI PGT HomoSapiens PMID:34811538 tetramer-sort yes amplicon-seq Naive T cells healthy healthy_6 chip0516_567724 PBMC +14017 CAVALSSQSTF TRAV8-3*01 TRAJ27*01 CASSGDGMNTEAFF TRBV10-2*01 TRBJ1-1*01 HLA-A*02:01 B2M MHCI CLGGLLTMV LMP2A EBV PMID:34811538 tetramer-sort yes amplicon-seq effector memory T cells healthy healthy_6 chip0516_875936 PBMC +14018 CILRDKTgg?DGCYMLIF TRAV26-2*01 TRAJ12*01 CARRPGGGGGYEQYF TRBV4-2*01 TRBJ2-7*01 HLA-A*02:01 B2M MHCI YLQQNWWTL LMP1 EBV PMID:34811538 tetramer-sort yes amplicon-seq effector memory T cells healthy healthy_6 chip0516_443584 PBMC +14019 CAIRNTGNQFYF TRAV41*01 TRAJ49*01 HLA-B*08:01 B2M MHCI HLKRNIVV GFAP HomoSapiens PMID:34811538 tetramer-sort yes amplicon-seq Naive T cells healthy healthy_8 chip0516_679497 PBMC +14020 CASYSTSGGQETQYF TRBV2*01 TRBJ2-5*01 HLA-A*01:01 B2M MHCI CTELKLSDY NP InfluenzaA PMID:34811538 tetramer-sort yes amplicon-seq central memory T cells healthy healthy_8 chip0516_84215 PBMC +14021 CASSGDGMNTEAFF TRBV10-2*01 TRBJ1-1*01 HLA-A*02:01 B2M MHCI CLGGLLTMV LMP2A EBV PMID:34811538 tetramer-sort yes amplicon-seq effector memory T cells healthy healthy_6 chip0516_807224 PBMC +14022 CAGPGLQGGSEKLVF TRAV12-2*01 TRAJ57*01 HLA-B*08:01 B2M MHCI RPIIRPATL NP InfluenzaA PMID:34811538 tetramer-sort yes amplicon-seq transitional T cells between effector and memory populations healthy healthy_9 chip0516_557030 PBMC +14024 CAVALSSKSTF TRAV8-3*01 TRAJ27*01 CASSGDGMNTEAFF TRBV10-2*01 TRBJ1-1*01 HLA-A*02:01 B2M MHCI CLGGLLTMV LMP2A EBV PMID:34811538 tetramer-sort yes amplicon-seq effector memory T cells healthy healthy_6 chip0516_520784 PBMC +14025 CATEGASGYSTLTF TRAV17*01 TRAJ11*01 HLA-A*02:01 B2M MHCI FLYALALLL LMP2 EBV PMID:34811538 tetramer-sort yes amplicon-seq central memory T cells healthy healthy_6 chip0516_143612 PBMC +14027 CAENIGYSGAGSYPLTF TRAV13-2*01 TRAJ28*01 HLA-B*08:01 B2M MHCI QAKWRLQTL EBNA3A EBV PMID:34811538 tetramer-sort yes amplicon-seq transitional T cells between effector and memory populations healthy healthy_9 chip0516_721840 PBMC +14028 CASGP*cc??aaGGKLIF TRAV13-1*01 TRAJ23*01 HLA-A*01:01 B2M MHCI CTELKLSDY NP InfluenzaA PMID:34811538 tetramer-sort yes amplicon-seq transitional T cells between effector and memory populations healthy healthy_8 chip0516_330650 PBMC +14029 CAVKGDTNAGKSTF TRAV12-2*01 TRAJ27*01 HLA-B*08:01 B2M MHCI FLRGRAYGL EBNA3A EBV PMID:34811538 tetramer-sort yes amplicon-seq effector memory T cells healthy healthy_8 chip0516_25957 PBMC +14030 CAEKDSNYQLIW TRAV13-2*01 TRAJ33*01 HLA-B*08:01 B2M MHCI RPIIRPATL NP InfluenzaA PMID:34811538 tetramer-sort yes amplicon-seq transitional T cells between effector and memory populations healthy healthy_8 chip0516_271006 PBMC +14031 CASSELGQPQHF TRBV2*01 TRBJ1-5*01 HLA-A*02:01 B2M MHCI FLGKIWPSYK GAG HIV-1 PMID:34811538 tetramer-sort yes amplicon-seq Naive T cells healthy healthy_7 chip0516_570284 PBMC +14032 CASSPLTDTQYF TRBV27*01 TRBJ2-3*01 HLA-B*08:01 B2M MHCI RAKFKQLL BZLF1 EBV PMID:34811538 tetramer-sort yes amplicon-seq effector memory T cells healthy healthy_8 chip0516_692172 PBMC +14033 CASSGDGMNTEAFF TRBV10-2*01 TRBJ1-1*01 HLA-A*02:01 B2M MHCI CLGGLLTMV LMP2A EBV PMID:34811538 tetramer-sort yes amplicon-seq effector memory T cells healthy healthy_6 chip0516_642962 PBMC +14034 CAVTLTLYSGAGSYQLTF TRAV21*01 TRAJ28*01 CASSLMGTGGLSEKLFF TRBV28*01 TRBJ1-4*01 HLA-B*08:01 B2M MHCI QAKWRLQTL EBNA3A EBV PMID:34811538 tetramer-sort yes amplicon-seq effector T cells healthy healthy_8 chip0516_532214 PBMC +14035 CASSLGQAYEQYF TRBV7-8*01 TRBJ2-7*01 HLA-B*08:01 B2M MHCI FLRGRAYGL EBNA3A EBV PMID:34811538 tetramer-sort yes amplicon-seq effector memory T cells healthy healthy_8 chip0516_34608 PBMC +14036 CASSGDGMNTEAFF TRBV10-2*01 TRBJ1-1*01 HLA-A*02:01 B2M MHCI CLGGLLTMV LMP2A EBV PMID:34811538 tetramer-sort yes amplicon-seq effector memory T cells healthy healthy_6 chip0516_881960 PBMC +14038 CAVSEVQAAGNKLTF TRAV8-4*01 TRAJ17*01 CASRKRFGSSEKLFF TRBV27*01 TRBJ1-4*01 HLA-B*08:01 B2M MHCI YAKWKLCSA ZNT8 HomoSapiens PMID:34811538 tetramer-sort yes amplicon-seq Naive T cells healthy healthy_8 chip0516_438379 PBMC +14043 CAVLMDSNYQLIW TRAV21*01 TRAJ33*01 HLA-A*02:01 B2M MHCI CLGGLLTMV LMP2A EBV PMID:34811538 tetramer-sort yes amplicon-seq effector memory T cells healthy healthy_6 chip0516_363139 PBMC +14045 CASSGDGMNTEAFF TRBV10-2*01 TRBJ1-1*01 HLA-A*02:01 B2M MHCI CLGGLLTMV LMP2A EBV PMID:34811538 tetramer-sort yes amplicon-seq effector memory T cells healthy healthy_6 chip0516_88578 PBMC +14046 CAVALSSKSTF TRAV8-3*01 TRAJ27*01 HLA-A*02:01 B2M MHCI CLGGLLTMV LMP2A EBV PMID:34811538 tetramer-sort yes amplicon-seq effector memory T cells healthy healthy_6 chip0516_808375 PBMC +14048 CAV*DNDMRF TRAV21*01 TRAJ43*01 HLA-A*02:01 B2M MHCI LLAGIGTVPI PGT HomoSapiens PMID:34811538 tetramer-sort yes amplicon-seq Naive T cells healthy healthy_6 chip0516_154269 PBMC +14050 CAVGEDRLMF TRAV8-3*01 TRAJ31*01 HLA-B*08:01 B2M MHCI RAKFKQLL BZLF1 EBV PMID:34811538 tetramer-sort yes amplicon-seq effector T cells healthy healthy_9 chip0516_542936 PBMC +14051 CASSGDGMNTEAFF TRBV10-2*01 TRBJ1-1*01 HLA-A*02:01 B2M MHCI CLGGLLTMV LMP2A EBV PMID:34811538 tetramer-sort yes amplicon-seq effector memory T cells healthy healthy_6 chip0516_181373 PBMC +14052 CARGSEGCGQSFGF TRAV36/DV7*01 TRAJ26*01 CASSPESSYNEQFF TRBV7-6*01 TRBJ2-1*01 HLA-A*02:01 B2M MHCI YLLEMLWRL LMP1 EBV PMID:34811538 tetramer-sort yes amplicon-seq central memory T cells healthy healthy_6 chip0516_375911 PBMC +14054 CILPLSCGPCYDKLPF TRAV26-2*01 TRAJ52*01 CASSSGQAYEQYF TRBV7-8*01 TRBJ2-7*01 HLA-B*08:01 B2M MHCI FLRGRAYGL EBNA3A EBV PMID:34811538 tetramer-sort yes amplicon-seq central memory T cells healthy healthy_8 chip0516_634788 PBMC +14057 CAVALSSKSTF TRAV8-3*01 TRAJ27*01 HLA-A*02:01 B2M MHCI CLGGLLTMV LMP2A EBV PMID:34811538 tetramer-sort yes amplicon-seq effector memory T cells healthy healthy_6 chip0516_782030 PBMC +14058 CAEDHALNF TRAV23/DV6*01,TRAV9-2*01 TRAJ41*01 CASSSGQGDNEQFF TRBV11-2*01 TRBJ2-1*01 HLA-A*02:01 B2M MHCI GLCTLVAML BLMF1 EBV PMID:34811538 tetramer-sort yes amplicon-seq effector T cells healthy healthy_6 chip0516_417146 PBMC +14059 CASNLAGFTEAFF TRBV5-1*01 TRBJ1-1*01 HLA-A*01:01 B2M MHCI STNVGSNTY IAPP HomoSapiens PMID:34811538 tetramer-sort yes amplicon-seq Naive T cells healthy healthy_9 chip0516_558861 PBMC +14062 CASSSGQAYEQYF TRBV7-8*01 TRBJ2-7*01 HLA-B*08:01 B2M MHCI FLRGRAYGL EBNA3A EBV PMID:34811538 tetramer-sort yes amplicon-seq effector T cells healthy healthy_8 chip0516_639436 PBMC +14063 CAVEDRVNYGGSQGNLIF TRAV2*01 TRAJ42*01 CASSSRASYEQYF TRBV19*01 TRBJ2-7*01 HLA-A*02:01 B2M MHCI GILGFVFTL M1 InfluenzaA PMID:34811538 tetramer-sort yes amplicon-seq effector T cells healthy healthy_7 chip0516_542394 PBMC +14066 CVPRGSSASKIIF TRAV12-1*01 TRAJ3*01 CSALGPSLPQGEQFF TRBV20-1*01 TRBJ2-1*01 HLA-A*02:01 B2M MHCI LLFNILGGWV NS4B HCV PMID:34811538 tetramer-sort yes amplicon-seq Naive T cells healthy healthy_7 chip0516_328489 PBMC +14067 CAMSRSYNTDKLIF TRAV12-3*01 TRAJ34*01 HLA-A*02:01 B2M MHCI LLAGIGTVPI PGT HomoSapiens PMID:34811538 tetramer-sort yes amplicon-seq Naive T cells healthy healthy_6 chip0516_876792 PBMC +14070 CATEGDSGYSTLTF TRAV17*01 TRAJ11*01 HLA-A*02:01 B2M MHCI FLYALALLL LMP2 EBV PMID:34811538 tetramer-sort yes amplicon-seq effector memory T cells healthy healthy_6 chip0516_807894 PBMC +14071 CASSLGTGNDYGYTF TRBV7-6*01 TRBJ1-2*01 HLA-A*01:01 B2M MHCI CTELKLSDY NP InfluenzaA PMID:34811538 tetramer-sort yes amplicon-seq transitional T cells between effector and memory populations healthy healthy_8 chip0516_375422 PBMC +14073 CASSTYVGHYEQYF TRBV5-1*01 TRBJ2-7*01 HLA-B*08:01 B2M MHCI RAKFKQLL BZLF1 EBV PMID:34811538 tetramer-sort yes amplicon-seq effector memory T cells healthy healthy_9 chip0516_713305 PBMC +14074 CAIGTNYGYTF TRBV7-9*01 TRBJ1-2*01 HLA-B*08:01 B2M MHCI QAKWRLQTL EBNA3A EBV PMID:34811538 tetramer-sort yes amplicon-seq Naive T cells healthy healthy_8 chip0516_480863 PBMC +14076 CILPPAGGTSYGKLTF TRAV26-2*01 TRAJ52*01 HLA-B*08:01 B2M MHCI FLRGRAYGL EBNA3A EBV PMID:34811538 tetramer-sort yes amplicon-seq effector memory T cells healthy healthy_8 chip0516_746785 PBMC +14077 CASSPGDTDTQYF TRBV4-2*01 TRBJ2-3*01 HLA-A*02:01 B2M MHCI SLYNTVATLY GAG HIV-1 PMID:34811538 tetramer-sort yes amplicon-seq Naive T cells healthy healthy_7 chip0516_633211 PBMC +14078 CAMTPMNTGNQFYF TRAV14/DV4*01 TRAJ49*01 CASRSTRca??acPNQPQHF TRBV11-3*01 TRBJ1-5*01 HLA-B*08:01 B2M MHCI RAKFKQLL BZLF1 EBV PMID:34811538 tetramer-sort yes amplicon-seq Naive T cells healthy healthy_9 chip0516_607287 PBMC +14080 CASSSRLHQWGEQFF TRBV13*01 TRBJ2-1*01 HLA-A*02:01 B2M MHCI YLLPGWKL VP3 RotavirusA PMID:34811538 tetramer-sort yes amplicon-seq Naive T cells healthy healthy_7 chip0516_779102 PBMC +14081 CILPLAGGTSYGKLTF TRAV26-2*01 TRAJ52*01 CASSLGQAYEQYF TRBV7-8*01 TRBJ2-7*01 HLA-B*08:01 B2M MHCI FLRGRAYGL EBNA3A EBV PMID:34811538 tetramer-sort yes amplicon-seq effector memory T cells healthy healthy_8 chip0516_420647 PBMC +14082 *ARKEPca??atAGLSPL TRAV19*01 TRAJ27*01 CASSFRTGITGELFF TRBV13*01 TRBJ2-2*01 HLA-B*08:01 B2M MHCI QAKWRLQTL EBNA3A EBV PMID:34811538 tetramer-sort yes amplicon-seq Naive T cells healthy healthy_8 chip0516_140452 PBMC +14084 CASSGDGMNTEAFF TRBV10-2*01 TRBJ1-1*01 HLA-A*02:01 B2M MHCI CLGGLLTMV LMP2A EBV PMID:34811538 tetramer-sort yes amplicon-seq effector memory T cells healthy healthy_6 chip0516_469490 PBMC +14086 CASSPGGGEETQYF TRBV25-1*01 TRBJ2-5*01 HLA-A*02:01 B2M MHCI CLGGLLTMV LMP2A EBV PMID:34811538 tetramer-sort yes amplicon-seq effector memory T cells healthy healthy_6 chip0516_166388 PBMC +14088 CILPLAGGTSYGKLTF TRAV26-2*01 TRAJ52*01 CASSLRQAYEQYF TRBV7-8*01 TRBJ2-7*01 HLA-B*08:01 B2M MHCI FLRGRAYGL EBNA3A EBV PMID:34811538 tetramer-sort yes amplicon-seq effector memory T cells healthy healthy_8 chip0516_694326 PBMC +14090 CALSEPLFNTGANSKLTF TRAV19*01 TRAJ56*01 HLA-B*08:01 B2M MHCI LWMRLLPL INS HomoSapiens PMID:34811538 tetramer-sort yes amplicon-seq Naive T cells healthy healthy_8 chip0516_318735 PBMC +14092 CAAPRLTGANNLFF TRAV36/DV7*01 TRAJ36*01 HLA-B*08:01 B2M MHCI SLQKRGIV INS HomoSapiens PMID:34811538 tetramer-sort yes amplicon-seq Naive T cells healthy healthy_8 chip0516_610828 PBMC +14093 CAMSAAGANSKLTF TRAV12-3*01 TRAJ56*01 CASSPPYNEQFF TRBV7-8*01 TRBJ2-1*01 HLA-A*02:01 B2M MHCI LLSLFSLWL ZNT8 HomoSapiens PMID:34811538 tetramer-sort yes amplicon-seq effector memory T cells healthy healthy_6 chip0516_114765 PBMC +14094 CASSGDGMNTEAFF TRBV10-2*01 TRBJ1-1*01 HLA-A*02:01 B2M MHCI CLGGLLTMV LMP2A EBV PMID:34811538 tetramer-sort yes amplicon-seq effector memory T cells healthy healthy_6 chip0516_49364 PBMC +14095 CASSCA??tSREQDF TRBV6-1*01 TRBJ2-7*01 HLA-A*02:01 B2M MHCI CLGGLLTMV LMP2A EBV PMID:34811538 tetramer-sort yes amplicon-seq effector memory T cells healthy healthy_6 chip0516_247629 PBMC +14096 CVSSIGF TRAV12-1*01 TRAJ14*01 CASSPVNTEAFF TRBV18*01 TRBJ1-1*01 HLA-A*02:01 B2M MHCI LLAGIGTVPI PGT HomoSapiens PMID:34811538 tetramer-sort yes amplicon-seq transitional T cells between effector and memory populations healthy healthy_7 chip0516_751110 PBMC +14097 CAVGARFSDGQKLLF TRAV8-3*01 TRAJ16*01 CSARGTGEGANVLTF TRBV20-1*01 TRBJ2-6*01 HLA-A*02:01 B2M MHCI GIIYIIYKL P3A CoxsackievirusB PMID:34811538 tetramer-sort yes amplicon-seq Naive T cells healthy healthy_7 chip0516_599997 PBMC +14098 CASSQSPGGTQYF TRBV14*01 TRBJ2-3*01 HLA-A*02:01 B2M MHCI GLCTLVAML BLMF1 EBV PMID:34811538 tetramer-sort yes amplicon-seq effector memory T cells healthy healthy_6 chip0516_88857 PBMC +14099 CASSGDGMNTEAFF TRBV10-2*01 TRBJ1-1*01 HLA-A*02:01 B2M MHCI CLGGLLTMV LMP2A EBV PMID:34811538 tetramer-sort yes amplicon-seq central memory T cells healthy healthy_6 chip0516_186976 PBMC +14100 CAVALSSKSTF TRAV8-3*01 TRAJ27*01 CASSGDGMNTEAFF TRBV10-2*01 TRBJ1-1*01 HLA-A*02:01 B2M MHCI CLGGLLTMV LMP2A EBV PMID:34811538 tetramer-sort yes amplicon-seq effector memory T cells healthy healthy_6 chip0516_489906 PBMC +14101 CASSFLAGEGVGEQFF TRBV7-6*01 TRBJ2-1*01 HLA-B*08:01 B2M MHCI RAKFKQLL BZLF1 EBV PMID:34811538 tetramer-sort yes amplicon-seq effector memory T cells healthy healthy_9 chip0516_285470 PBMC +14103 CASSSRSFYEQYF TRBV19*01 TRBJ2-7*01 HLA-A*02:01 B2M MHCI GILGFVFTL M1 InfluenzaA PMID:34811538 tetramer-sort yes amplicon-seq transitional T cells between effector and memory populations healthy healthy_6 chip0516_824197 PBMC +14104 CASSGDGMNTEAFF TRBV10-2*01 TRBJ1-1*01 HLA-A*02:01 B2M MHCI CLGGLLTMV LMP2A EBV PMID:34811538 tetramer-sort yes amplicon-seq central memory T cells healthy healthy_6 chip0516_274720 PBMC +14106 CASSIRSAYEQYF TRBV19*01 TRBJ2-7*01 HLA-A*02:01 B2M MHCI GILGFVFTL M1 InfluenzaA PMID:34811538 tetramer-sort yes amplicon-seq transitional T cells between effector and memory populations healthy healthy_7 chip0516_200935 PBMC +14107 CILPLAGGTSYGKLTF TRAV26-2*01 TRAJ52*01 CASSLGQAYEQYF TRBV7-8*01 TRBJ2-7*01 HLA-B*08:01 B2M MHCI FLRGRAYGL EBNA3A EBV PMID:34811538 tetramer-sort yes amplicon-seq central memory T cells healthy healthy_8 chip0516_811645 PBMC +14108 CAVAIGF TRAV12-2*01 TRAJ34*01 HLA-A*02:01 B2M MHCI ALAGIGILTV MART1 HomoSapiens PMID:34811538 tetramer-sort yes amplicon-seq Naive T cells healthy healthy_6 chip0516_305323 PBMC +14109 CALSESRAGTASKLTF TRAV19*01 TRAJ44*01 HLA-A*01:01 B2M MHCI VTDAAHLLI ZNT8 HomoSapiens PMID:34811538 tetramer-sort yes amplicon-seq Naive T cells healthy healthy_8 chip0516_157155 PBMC +14110 CAVKTDTNAGKSTF TRAV12-2*01 TRAJ27*01 HLA-B*08:01 B2M MHCI FLRGRAYGL EBNA3A EBV PMID:34811538 tetramer-sort yes amplicon-seq effector memory T cells healthy healthy_8 chip0516_145617 PBMC +14111 CSARGSGAWDGYTF TRBV20-1*01 TRBJ1-2*01 HLA-B*08:01 B2M MHCI FLKEKGGL Nef HIV-1 PMID:34811538 tetramer-sort yes amplicon-seq Naive T cells healthy healthy_9 chip0516_542577 PBMC +14112 CAVLMDSNYQLIW TRAV21*01 TRAJ33*01 CASSEDGMNTEALF TRBV10-2*01 TRBJ1-1*01 HLA-A*02:01 B2M MHCI CLGGLLTMV LMP2A EBV PMID:34811538 tetramer-sort yes amplicon-seq effector memory T cells healthy healthy_6 chip0516_440414 PBMC +14113 CAVALSSKSTF TRAV8-3*01 TRAJ27*01 CASSGDGMNTEAFF TRBV10-2*01 TRBJ1-1*01 HLA-A*02:01 B2M MHCI CLGGLLTMV LMP2A EBV PMID:34811538 tetramer-sort yes amplicon-seq effector memory T cells healthy healthy_6 chip0516_138533 PBMC +14114 CILPLAGGTSYGKLTF TRAV26-2*01 TRAJ52*01 CASSLGQAYEQYF TRBV7-8*01 TRBJ2-7*01 HLA-B*08:01 B2M MHCI FLRGRAYGL EBNA3A EBV PMID:34811538 tetramer-sort yes amplicon-seq effector T cells healthy healthy_8 chip0516_494143 PBMC +14115 CASSSGQAYEQYF TRBV7-8*01 TRBJ2-7*01 HLA-B*08:01 B2M MHCI FLRGRAYGL EBNA3A EBV PMID:34811538 tetramer-sort yes amplicon-seq transitional T cells between effector and memory populations healthy healthy_8 chip0516_124125 PBMC +14116 CASSGDGMNTEAFF TRBV10-2*01 TRBJ1-1*01 HLA-A*02:01 B2M MHCI CLGGLLTMV LMP2A EBV PMID:34811538 tetramer-sort yes amplicon-seq central memory T cells healthy healthy_6 chip0516_66556 PBMC +14117 CAGFTGGFKTIF TRAV12-2*01 TRAJ9*01 CASRLGDNTQYF TRBV3-1*01 TRBJ2-3*01 HLA-A*02:01 B2M MHCI ALAGIGILTV MART1 HomoSapiens PMID:34811538 tetramer-sort yes amplicon-seq Naive T cells healthy healthy_6 chip0516_439561 PBMC +14118 CAERQRAGYSTLTF TRAV13-2*01 TRAJ11*01 HLA-A*01:01 B2M MHCI CTELKLSDY NP InfluenzaA PMID:34811538 tetramer-sort yes amplicon-seq Naive T cells healthy healthy_8 chip0516_708245 PBMC +14119 CILPLAGGTSYGKLTF TRAV26-2*01 TRAJ52*01 CASSLGQAYEQYF TRBV7-8*01 TRBJ2-7*01 HLA-B*08:01 B2M MHCI FLRGRAYGL EBNA3A EBV PMID:34811538 tetramer-sort yes amplicon-seq effector memory T cells healthy healthy_8 chip0516_7198 PBMC +14121 CILPLAGGTSYGKLTF TRAV26-2*01 TRAJ52*01 CASSLGQAYEQYF TRBV7-8*01 TRBJ2-7*01 HLA-B*08:01 B2M MHCI FLRGRAYGL EBNA3A EBV PMID:34811538 tetramer-sort yes amplicon-seq effector memory T cells healthy healthy_8 chip0516_666055 PBMC +14123 CASSLMGTGGLSEKLFF TRBV28*01 TRBJ1-4*01 HLA-B*08:01 B2M MHCI QAKWRLQTL EBNA3A EBV PMID:34811538 tetramer-sort yes amplicon-seq effector memory T cells healthy healthy_8 chip0516_814627 PBMC +14126 CAVLMDSNYQLIW TRAV21*01 TRAJ33*01 CASSGDGMNTEAFF TRBV10-2*01 TRBJ1-1*01 HLA-A*02:01 B2M MHCI CLGGLLTMV LMP2A EBV PMID:34811538 tetramer-sort yes amplicon-seq effector memory T cells healthy healthy_6 chip0516_148568 PBMC +14127 CASSSGQAYEQYF TRBV7-8*01 TRBJ2-7*01 HLA-B*08:01 B2M MHCI FLRGRAYGL EBNA3A EBV PMID:34811538 tetramer-sort yes amplicon-seq effector memory T cells healthy healthy_8 chip0516_787522 PBMC +14130 CASTGARGSYEQYF TRBV2*01 TRBJ2-7*01 HLA-A*01:01 B2M MHCI VTDAAHLLI ZNT8 HomoSapiens PMID:34811538 tetramer-sort yes amplicon-seq effector memory T cells healthy healthy_9 chip0516_481343 PBMC +14132 CATRSSGDQETQYF TRBV2*01 TRBJ2-5*01 HLA-A*01:01 B2M MHCI CTELKLSDY NP InfluenzaA PMID:34811538 tetramer-sort yes amplicon-seq Naive T cells healthy healthy_9 chip0516_537944 PBMC +14133 CSARDPGAENTIYF TRBV20-1*01 TRBJ1-3*01 HLA-A*02:01 B2M MHCI GILGFVFTL M1 InfluenzaA PMID:34811538 tetramer-sort yes amplicon-seq transitional T cells between effector and memory populations healthy healthy_7 chip0516_512100 PBMC +14134 CAVKTDTNAGKSTF TRAV12-2*01 TRAJ27*01 HLA-B*08:01 B2M MHCI FLRGRAYGL EBNA3A EBV PMID:34811538 tetramer-sort yes amplicon-seq effector memory T cells healthy healthy_8 chip0516_164401 PBMC +14135 CAYRVLDSNYQLIW TRAV38-1*01 TRAJ33*01 CASAGQGPSGDTQYF TRBV2*01 TRBJ2-3*01 HLA-B*08:01 B2M MHCI RAKFKQLL BZLF1 EBV PMID:34811538 tetramer-sort yes amplicon-seq effector memory T cells healthy healthy_8 chip0516_146126 PBMC +14137 CAVALSSKSTF TRAV8-3*01 TRAJ27*01 CASSGDGMNTEAFF TRBV10-2*01 TRBJ1-1*01 HLA-A*02:01 B2M MHCI CLGGLLTMV LMP2A EBV PMID:34811538 tetramer-sort yes amplicon-seq effector memory T cells healthy healthy_6 chip0516_323611 PBMC +14138 CGTETDRGSTLGRLYF TRAV30*01 TRAJ18*01 CASSLLPGLAVNEQFF TRBV11-2*01 TRBJ2-1*01 HLA-A*02:01 B2M MHCI RGPGRAFVTI GP160 HIV-1 PMID:34811538 tetramer-sort yes amplicon-seq Naive T cells healthy healthy_6 chip0516_268871 PBMC +14139 CAMREGcc??agGGKLIF TRAV14/DV4*01 TRAJ23*01 CSVVSIENTIYF TRBV29-1*01 TRBJ1-3*01 HLA-A*02:01 B2M MHCI ELAGIGILTV MART1 HomoSapiens PMID:34811538 tetramer-sort yes amplicon-seq Naive T cells healthy healthy_7 chip0516_716149 PBMC +14140 CASSLGQAYEQYF TRBV7-8*01 TRBJ2-7*01 HLA-B*08:01 B2M MHCI FLRGRAYGL EBNA3A EBV PMID:34811538 tetramer-sort yes amplicon-seq effector T cells healthy healthy_8 chip0516_390680 PBMC +14141 CILPLAGGASYGKLTF TRAV26-2*01 TRAJ52*01 CASSLGQAYEQYF TRBV7-8*01 TRBJ2-7*01 HLA-B*08:01 B2M MHCI FLRGRAYGL EBNA3A EBV PMID:34811538 tetramer-sort yes amplicon-seq central memory T cells healthy healthy_8 chip0516_242055 PBMC +14143 CAVLMDSNYQLIW TRAV12-3*01 TRAJ33*01 HLA-A*02:01 B2M MHCI CLGGLLTMV LMP2A EBV PMID:34811538 tetramer-sort yes amplicon-seq effector memory T cells healthy healthy_6 chip0516_686519 PBMC +14144 CAVALSSKSTF TRAV8-3*01 TRAJ27*01 HLA-A*02:01 B2M MHCI CLGGLLTMV LMP2A EBV PMID:34811538 tetramer-sort yes amplicon-seq effector memory T cells healthy healthy_6 chip0516_213104 PBMC +14145 YILPLAGRAGYERLPL TRAV26-2*01 TRAJ52*01 CASSLGQAYEQYF TRBV7-8*01 TRBJ2-7*01 HLA-B*08:01 B2M MHCI FLRGRAYGL EBNA3A EBV PMID:34811538 tetramer-sort yes amplicon-seq effector memory T cells healthy healthy_8 chip0516_14407 PBMC +14146 CAAGGKLIF TRAV12-2*01 TRAJ23*01 CASTRQGKETQYF TRBV6-2*01,TRBV6-3*01 TRBJ2-5*01 HLA-A*02:01 B2M MHCI YVLDHLIVV BRLF1 EBV PMID:34811538 tetramer-sort yes amplicon-seq effector T cells healthy healthy_6 chip0516_825270 PBMC +14147 CASSGDGMNTEAFF TRBV10-2*01 TRBJ1-1*01 HLA-A*02:01 B2M MHCI CLGGLLTMV LMP2A EBV PMID:34811538 tetramer-sort yes amplicon-seq effector memory T cells healthy healthy_6 chip0516_854715 PBMC +14148 CASSSGQGDNEQFF TRBV11-2*01 TRBJ2-1*01 HLA-A*02:01 B2M MHCI GLCTLVAML BLMF1 EBV PMID:34811538 tetramer-sort yes amplicon-seq effector T cells healthy healthy_6 chip0516_268833 PBMC +14149 CASSGDGMNTEAFF TRBV10-2*01 TRBJ1-1*01 HLA-A*02:01 B2M MHCI CLGGLLTMV LMP2A EBV PMID:34811538 tetramer-sort yes amplicon-seq effector memory T cells healthy healthy_6 chip0516_855866 PBMC +14150 CILPLAGGTSYGKLTF TRAV26-2*01 TRAJ52*01 CASSLGQAYEQYF TRBV7-8*01 TRBJ2-7*01 HLA-B*08:01 B2M MHCI FLRGRAYGL EBNA3A EBV PMID:34811538 tetramer-sort yes amplicon-seq effector memory T cells healthy healthy_8 chip0516_784771 PBMC +14151 CILPLAGGTSYGKLTF TRAV26-2*01 TRAJ52*01 CASSLGQAYEQYF TRBV7-8*01 TRBJ2-7*01 HLA-B*08:01 B2M MHCI FLRGRAYGL EBNA3A EBV PMID:34811538 tetramer-sort yes amplicon-seq effector T cells healthy healthy_8 chip0516_566594 PBMC +14152 CARHRGGSYIPTF TRAV19*01 TRAJ6*01 CASSQVLTGTENSPLHF TRBV4-1*01 TRBJ1-6*01 HLA-A*01:01 B2M MHCI LVSDGGPNLY PB1 InfluenzaA PMID:34811538 tetramer-sort yes amplicon-seq natural killer-like T cells healthy healthy_8 chip0516_91223 PBMC +14155 CASSGDGMNTEAFF TRBV10-2*01 TRBJ1-1*01 HLA-A*02:01 B2M MHCI CLGGLLTMV LMP2A EBV PMID:34811538 tetramer-sort yes amplicon-seq effector memory T cells healthy healthy_6 chip0516_705099 PBMC +14156 CILPLAGGTSYGKLTF TRAV26-2*01 TRAJ52*01 CANSLGQAYEQYF TRBV7-8*01 TRBJ2-7*01 HLA-B*08:01 B2M MHCI FLRGRAYGL EBNA3A EBV PMID:34811538 tetramer-sort yes amplicon-seq effector memory T cells healthy healthy_8 chip0516_229158 PBMC +14157 CAVALSSKSTF TRAV8-3*01 TRAJ27*01 CASSGDGMNTEAFF TRBV10-2*01 TRBJ1-1*01 HLA-A*02:01 B2M MHCI CLGGLLTMV LMP2A EBV PMID:34811538 tetramer-sort yes amplicon-seq effector memory T cells healthy healthy_6 chip0516_683124 PBMC +14163 CILPLAGGTSSGKLTF TRAV26-2*01 TRAJ52*01 CASSLGQAYEQYF TRBV7-8*01 TRBJ2-7*01 HLA-B*08:01 B2M MHCI FLRGRAYGL EBNA3A EBV PMID:34811538 tetramer-sort yes amplicon-seq effector memory T cells healthy healthy_8 chip0516_88900 PBMC +14164 CASSGDGMNTEAFF TRBV10-2*01 TRBJ1-1*01 HLA-A*02:01 B2M MHCI CLGGLLTMV LMP2A EBV PMID:34811538 tetramer-sort yes amplicon-seq effector memory T cells healthy healthy_6 chip0516_628715 PBMC +14165 CASIGDGMNTEAFF TRBV10-2*01 TRBJ1-1*01 HLA-A*02:01 B2M MHCI CLGGLLTMV LMP2A EBV PMID:34811538 tetramer-sort yes amplicon-seq effector memory T cells healthy healthy_6 chip0516_610699 PBMC +14169 CASRGLVGSAGELFF TRBV19*01 TRBJ2-2*01 HLA-A*02:01 B2M MHCI YVLDHLIVV BRLF1 EBV PMID:34811538 tetramer-sort yes amplicon-seq effector memory T cells healthy healthy_6 chip0516_310179 PBMC +14170 CASSLGQAYEQYF TRBV7-8*01 TRBJ2-7*01 HLA-B*08:01 B2M MHCI FLRGRAYGL EBNA3A EBV PMID:34811538 tetramer-sort yes amplicon-seq effector memory T cells healthy healthy_8 chip0516_526522 PBMC +14171 CILPLAGGTSYGKLTF TRAV26-2*01 TRAJ52*01 HLA-B*08:01 B2M MHCI FLRGRAYGL EBNA3A EBV PMID:34811538 tetramer-sort yes amplicon-seq effector memory T cells healthy healthy_8 chip0516_426419 PBMC +14172 CILPLAGGTSYGKLTF TRAV26-2*01 TRAJ52*01 CASSLGQAYEQYF TRBV7-8*01 TRBJ2-7*01 HLA-B*08:01 B2M MHCI FLRGRAYGL EBNA3A EBV PMID:34811538 tetramer-sort yes amplicon-seq effector memory T cells healthy healthy_8 chip0516_379382 PBMC +14175 CAENQAGTALIF TRAV13-2*01 TRAJ15*01 HLA-B*08:01 B2M MHCI RPIIRPATL NP InfluenzaA PMID:34811538 tetramer-sort yes amplicon-seq Naive T cells healthy healthy_8 chip0516_857477 PBMC +14176 CILPLAGGTSYGKLTF TRAV26-2*01 TRAJ52*01 HLA-B*08:01 B2M MHCI FLRGRAYGL EBNA3A EBV PMID:34811538 tetramer-sort yes amplicon-seq effector memory T cells healthy healthy_8 chip0516_763820 PBMC +14177 CASRGRLDRAF TRBV28*01 TRBJ1-1*01 HLA-A*02:01 B2M MHCI LLAGIGTVPI PGT HomoSapiens PMID:34811538 tetramer-sort yes amplicon-seq Naive T cells healthy healthy_7 chip0516_777682 PBMC +14178 CASSLGIMGNEQFF TRBV7-2*01 TRBJ2-1*01 HLA-A*02:01 B2M MHCI ALAGIGILTV MART1 HomoSapiens PMID:34811538 tetramer-sort yes amplicon-seq transitional T cells between effector and memory populations healthy healthy_7 chip0516_167721 PBMC +14179 CAMREGGNFNKFYF TRAV14/DV4*01 TRAJ21*01 CSAPCPPHNEQFF TRBV20-1*01 TRBJ2-1*01 HLA-A*02:01 B2M MHCI YVLDHLIVV BRLF1 EBV PMID:34811538 tetramer-sort yes amplicon-seq effector T cells healthy healthy_6 chip0516_784885 PBMC +14180 YILPLAGGPPYPHLTF TRAV26-2*01 TRAJ52*01 HLA-B*08:01 B2M MHCI FLRGRAYGL EBNA3A EBV PMID:34811538 tetramer-sort yes amplicon-seq transitional T cells between effector and memory populations healthy healthy_8 chip0516_568090 PBMC +14181 CASSGDGMNTEAFF TRBV10-2*01 TRBJ1-1*01 HLA-A*02:01 B2M MHCI CLGGLLTMV LMP2A EBV PMID:34811538 tetramer-sort yes amplicon-seq effector memory T cells healthy healthy_6 chip0516_536680 PBMC +14182 CAIANGQGPGADTQYF TRBV10-3*01 TRBJ2-3*01 HLA-A*01:01 B2M MHCI CTELKLSDY NP InfluenzaA PMID:34811538 tetramer-sort yes amplicon-seq central memory T cells healthy healthy_9 chip0516_136255 PBMC +14183 CIVRVPRR??gTGRRALTF TRAV26-1*01 TRAJ5*01 HLA-A*02:01 B2M MHCI SLAAGVKLL PTPRN HomoSapiens PMID:34811538 tetramer-sort yes amplicon-seq Naive T cells healthy healthy_6 chip0516_94062 PBMC +14184 CASSLSGGRSDQPQHF TRBV7-6*01 TRBJ1-5*01 HLA-A*02:01 B2M MHCI VIYQYMDDL POL HIV-1 PMID:34811538 tetramer-sort yes amplicon-seq Naive T cells healthy healthy_7 chip0516_599650 PBMC +14186 CILPLAGGTSYGKLTL TRAV26-2*01 TRAJ52*01 CASSLGQAYEQYF TRBV7-8*01 TRBJ2-7*01 HLA-B*08:01 B2M MHCI FLRGRAYGL EBNA3A EBV PMID:34811538 tetramer-sort yes amplicon-seq effector T cells healthy healthy_8 chip0516_827703 PBMC +14187 CASSLGQAYEQYF TRBV7-8*01 TRBJ2-7*01 HLA-B*08:01 B2M MHCI FLRGRAYGL EBNA3A EBV PMID:34811538 tetramer-sort yes amplicon-seq effector memory T cells healthy healthy_8 chip0516_723029 PBMC +14188 CASSEDGLNPEAVF TRBV10-2*01 TRBJ1-1*01 HLA-A*02:01 B2M MHCI CLGGLLTMV LMP2A EBV PMID:34811538 tetramer-sort yes amplicon-seq effector memory T cells healthy healthy_6 chip0516_3282 PBMC +14189 CASSGDGMNTEAFF TRBV10-2*01 TRBJ1-1*01 HLA-A*02:01 B2M MHCI CLGGLLTMV LMP2A EBV PMID:34811538 tetramer-sort yes amplicon-seq effector memory T cells healthy healthy_6 chip0516_290563 PBMC +14190 YPLIDSSYQLIF TRAV8-6*01 TRAJ12*01 HLA-A*01:01 B2M MHCI LVSDGGPNLY PB1 InfluenzaA PMID:34811538 tetramer-sort yes amplicon-seq Naive T cells healthy healthy_9 chip0516_48877 PBMC +14191 CASGTYKHIF TRAV12-1*01 TRAJ40*01 CASGGPALHF TRBV27*01 TRBJ1-6*01 HLA-B*08:01 B2M MHCI YLKTNLFL G6PC2 HomoSapiens PMID:34811538 tetramer-sort yes amplicon-seq Naive T cells healthy healthy_8 chip0516_703874 PBMC +14192 CAVRTSGFQKLVF TRAV12-2*01 TRAJ8*01 CASSLREFHETQYF TRBV6-1*01 TRBJ2-5*01 HLA-B*08:01 B2M MHCI FLRGRAYGL EBNA3A EBV PMID:34811538 tetramer-sort yes amplicon-seq effector memory T cells healthy healthy_8 chip0516_221815 PBMC +14193 CAVAGGTSYGKLTF TRAV8-3*01 TRAJ52*01 HLA-A*01:01 B2M MHCI HSNLNDATY NP InfluenzaA PMID:34811538 tetramer-sort yes amplicon-seq Naive T cells healthy healthy_8 chip0516_149672 PBMC +14194 CASSYTAKTDTSNQPQHF TRBV6-2*01,TRBV6-3*01 TRBJ1-5*01 HLA-A*02:01 B2M MHCI GILGFVFTL M1 InfluenzaA PMID:34811538 tetramer-sort yes amplicon-seq effector T cells healthy healthy_6 chip0516_494245 PBMC +14196 CVGSGGGADGLPF TRAV12-1*01 TRAJ45*01 CASSLAGTGIYHTEAFF TRBV5-6*01 TRBJ1-1*01 HLA-A*02:01 B2M MHCI ELAGIGILTV MART1 HomoSapiens PMID:34811538 tetramer-sort yes amplicon-seq Naive T cells healthy healthy_7 chip0516_273386 PBMC +14198 CAVETDTNAGK*TF TRAV12-2*01 TRAJ27*01 HLA-B*08:01 B2M MHCI FLRGRAYGL EBNA3A EBV PMID:34811538 tetramer-sort yes amplicon-seq effector memory T cells healthy healthy_8 chip0516_646060 PBMC +14199 CAMSAAGANSKLTF TRAV12-3*01 TRAJ56*01 CASSPPYNEQFF TRBV7-8*01 TRBJ2-1*01 HLA-A*02:01 B2M MHCI LLSLFSLWL ZNT8 HomoSapiens PMID:34811538 tetramer-sort yes amplicon-seq transitional T cells between effector and memory populations healthy healthy_6 chip0516_69972 PBMC +14200 CAVKGDTNAGKSTF TRAV12-2*01 TRAJ27*01 CASSDSVGFNSPLHF TRBV6-4*01 TRBJ1-6*01 HLA-B*08:01 B2M MHCI FLRGRAYGL EBNA3A EBV PMID:34811538 tetramer-sort yes amplicon-seq effector memory T cells healthy healthy_8 chip0516_758204 PBMC +14201 CAVALSSKSTF TRAV8-3*01 TRAJ27*01 HLA-A*02:01 B2M MHCI CLGGLLTMV LMP2A EBV PMID:34811538 tetramer-sort yes amplicon-seq effector memory T cells healthy healthy_6 chip0516_778758 PBMC +14203 CASSGDGMNTEAFF TRBV10-2*01 TRBJ1-1*01 HLA-A*02:01 B2M MHCI CLGGLLTMV LMP2A EBV PMID:34811538 tetramer-sort yes amplicon-seq effector memory T cells healthy healthy_6 chip0516_494150 PBMC +14204 CLLGDK*Y??tGANSKLTF TRAV40*01 TRAJ56*01 CASSQESVGVQWALPSGELFF TRBV14*01 TRBJ2-2*01 HLA-A*02:01 B2M MHCI LLAGIGTVPI PGT HomoSapiens PMID:34811538 tetramer-sort yes amplicon-seq Naive T cells healthy healthy_7 chip0516_435172 PBMC +14205 CSVEDPRAGELFF TRBV29-1*01 TRBJ2-2*01 HLA-A*02:01 B2M MHCI ALAGIGILTV MART1 HomoSapiens PMID:34811538 tetramer-sort yes amplicon-seq central memory T cells healthy healthy_7 chip0516_402395 PBMC +14206 CAAEEca?GNMLTF TRAV21*01 TRAJ39*01 HLA-A*02:01 B2M MHCI LLAGIGTVPI PGT HomoSapiens PMID:34811538 tetramer-sort yes amplicon-seq Naive T cells healthy healthy_7 chip0516_134085 PBMC +14207 CAVEAGAGSYQLTF TRAV39*01 TRAJ28*01 CASSPGYVLDEKLFF TRBV6-1*01 TRBJ1-4*01 HLA-B*08:01 B2M MHCI YLKTNLFL G6PC2 HomoSapiens PMID:34811538 tetramer-sort yes amplicon-seq Naive T cells healthy healthy_8 chip0516_34237 PBMC +14212 CASSLGQAYEQYF TRBV7-8*01 TRBJ2-7*01 HLA-B*08:01 B2M MHCI FLRGRAYGL EBNA3A EBV PMID:34811538 tetramer-sort yes amplicon-seq central memory T cells healthy healthy_8 chip0516_61227 PBMC +14213 CALQRLaa??ccLGGLYF TRAV12-3*01 TRAJ18*01 CSVEEGASGIYEQYF TRBV29-1*01 TRBJ2-7*01 HLA-A*02:01 B2M MHCI LLAGIGTVPI PGT HomoSapiens PMID:34811538 tetramer-sort yes amplicon-seq Naive T cells healthy healthy_7 chip0516_740747 PBMC +14215 CAVALSSKSTF TRAV8-3*01 TRAJ27*01 CASSGDGMNTEAFF TRBV10-2*01 TRBJ1-1*01 HLA-A*02:01 B2M MHCI CLGGLLTMV LMP2A EBV PMID:34811538 tetramer-sort yes amplicon-seq effector memory T cells healthy healthy_6 chip0516_98209 PBMC +14220 CASSGDGMNTEAFF TRBV10-2*01 TRBJ1-1*01 HLA-A*02:01 B2M MHCI CLGGLLTMV LMP2A EBV PMID:34811538 tetramer-sort yes amplicon-seq effector memory T cells healthy healthy_6 chip0516_413454 PBMC +14222 CASSLMGTGGLSEKLFF TRBV28*01 TRBJ1-4*01 HLA-B*08:01 B2M MHCI QAKWRLQTL EBNA3A EBV PMID:34811538 tetramer-sort yes amplicon-seq transitional T cells between effector and memory populations healthy healthy_8 chip0516_657267 PBMC +14223 CASTHLPGLTSGNTIYF TRBV19*01 TRBJ1-3*01 HLA-A*02:01 B2M MHCI LLAGIGTVPI PGT HomoSapiens PMID:34811538 tetramer-sort yes amplicon-seq Naive T cells healthy healthy_7 chip0516_646645 PBMC +14224 CAVALSSKSTF TRAV8-3*01 TRAJ27*01 CASSLGQAYEQYF TRBV7-8*01 TRBJ2-7*01 HLA-A*02:01 B2M MHCI CLGGLLTMV LMP2A EBV PMID:34811538 tetramer-sort yes amplicon-seq effector memory T cells healthy healthy_6 chip0516_280836 PBMC +14225 CASKQWISYEQYF TRBV2*01 TRBJ2-7*01 HLA-A*01:01 B2M MHCI VTDAAHLLI ZNT8 HomoSapiens PMID:34811538 tetramer-sort yes amplicon-seq Naive T cells healthy healthy_9 chip0516_706200 PBMC +14227 CAVRVLYNFNKFYF TRAV3*01 TRAJ21*01 CASSLQRDRVYEQYF TRBV5-6*01 TRBJ2-7*01 HLA-B*08:01 B2M MHCI CPLSKILL LMP2A EBV PMID:34811538 tetramer-sort yes amplicon-seq Naive T cells healthy healthy_8 chip0516_634057 PBMC +14228 CILPLAGGTSYGKLTF TRAV26-2*01 TRAJ52*01 CASSLGQAYEQYF TRBV7-8*01 TRBJ2-7*01 HLA-B*08:01 B2M MHCI FLRGRAYGL EBNA3A EBV PMID:34811538 tetramer-sort yes amplicon-seq effector memory T cells healthy healthy_8 chip0516_18656 PBMC +14229 CAVLMDSNYRLIW TRAV21*01 TRAJ33*01 CASSGDGMNTEAFF TRBV10-2*01 TRBJ1-1*01 HLA-A*02:01 B2M MHCI CLGGLLTMV LMP2A EBV PMID:34811538 tetramer-sort yes amplicon-seq effector memory T cells healthy healthy_6 chip0516_97150 PBMC +14231 CAVWPSGYALNF TRAV1-2*01 TRAJ41*01 CASSQSGGENNEQFF TRBV4-1*01 TRBJ2-1*01 HLA-B*08:01 B2M MHCI WMRLLPLL INS HomoSapiens PMID:34811538 tetramer-sort yes amplicon-seq Naive T cells healthy healthy_8 chip0516_531739 PBMC +14233 CAVLMDSNYQLIW TRAV21*01 TRAJ33*01 HLA-A*02:01 B2M MHCI CLGGLLTMV LMP2A EBV PMID:34811538 tetramer-sort yes amplicon-seq effector memory T cells healthy healthy_6 chip0516_711194 PBMC +14234 CSVGEVGYEQYF TRBV29-1*01 TRBJ2-7*01 HLA-A*02:01 B2M MHCI LLSLFSLWL ZNT8 HomoSapiens PMID:34811538 tetramer-sort yes amplicon-seq effector memory T cells healthy healthy_7 chip0516_243462 PBMC +14235 CASSQVFRTGLNEQYF TRBV3-1*01 TRBJ2-7*01 HLA-A*02:01 B2M MHCI ALAGIGILTV MART1 HomoSapiens PMID:34811538 tetramer-sort yes amplicon-seq Naive T cells healthy healthy_6 chip0516_132224 PBMC +14236 CASSGDGMNTEAFF TRBV10-2*01 TRBJ1-1*01 HLA-A*02:01 B2M MHCI CLGGLLTMV LMP2A EBV PMID:34811538 tetramer-sort yes amplicon-seq effector memory T cells healthy healthy_6 chip0516_242906 PBMC +14238 CAVALSSKSTF TRAV8-3*01 TRAJ27*01 CASSGDGMNTEAFF TRBV10-2*01 TRBJ1-1*01 HLA-A*02:01 B2M MHCI CLGGLLTMV LMP2A EBV PMID:34811538 tetramer-sort yes amplicon-seq effector T cells healthy healthy_6 chip0516_470342 PBMC +14239 CASFHAGNNRKLIW TRAV13-1*01 TRAJ38*01 HLA-B*08:01 B2M MHCI RMMEYGTTM GAD2 HomoSapiens PMID:34811538 tetramer-sort yes amplicon-seq Naive T cells healthy healthy_8 chip0516_401390 PBMC +14240 CAASAcg??ctNQFYF TRAV29/DV5*01 TRAJ49*01 CASSTQTAPDDTQYF TRBV7-9*01 TRBJ2-3*01 HLA-B*08:01 B2M MHCI RAKFKQLL BZLF1 EBV PMID:34811538 tetramer-sort yes amplicon-seq effector memory T cells healthy healthy_8 chip0516_50082 PBMC +14241 CASSLGQAYEQYF TRBV7-8*01 TRBJ2-7*01 HLA-B*08:01 B2M MHCI FLRGRAYGL EBNA3A EBV PMID:34811538 tetramer-sort yes amplicon-seq effector memory T cells healthy healthy_8 chip0516_249399 PBMC +14244 CILPLAGGTSYGKLTF TRAV26-2*01 TRAJ52*01 HLA-B*08:01 B2M MHCI FLRGRAYGL EBNA3A EBV PMID:34811538 tetramer-sort yes amplicon-seq effector memory T cells healthy healthy_8 chip0516_105002 PBMC +14245 CAVTGTASPLTF TRAV12-2*01 TRAJ44*01 HLA-A*02:01 B2M MHCI ALAGIGILTV MART1 HomoSapiens PMID:34811538 tetramer-sort yes amplicon-seq Naive T cells healthy healthy_7 chip0516_820162 PBMC +14246 CASSLRFGTGVEKLFF TRBV28*01 TRBJ1-4*01 HLA-A*02:01 B2M MHCI LLPPLLEHL PTPRN HomoSapiens PMID:34811538 tetramer-sort yes amplicon-seq transitional T cells between effector and memory populations healthy healthy_7 chip0516_594379 PBMC +14247 CSAIFIGLAGGEQFF TRBV20-1*01 TRBJ2-1*01 HLA-A*02:01 B2M MHCI SLYNTVATLY GAG HIV-1 PMID:34811538 tetramer-sort yes amplicon-seq Naive T cells healthy healthy_7 chip0516_13841 PBMC +14248 CILPLAGGTCYGALTF TRAV26-2*01 TRAJ52*01 CASSLGQAYEQYF TRBV7-8*01 TRBJ2-7*01 HLA-B*08:01 B2M MHCI FLRGRAYGL EBNA3A EBV PMID:34811538 tetramer-sort yes amplicon-seq effector memory T cells healthy healthy_8 chip0516_842782 PBMC +14249 CAVKTDTNAGKSTF TRAV12-2*01 TRAJ27*01 HLA-B*08:01 B2M MHCI FLRGRAYGL EBNA3A EBV PMID:34811538 tetramer-sort yes amplicon-seq effector T cells healthy healthy_8 chip0516_516736 PBMC +14251 CTSSGDGMNPEALC TRBV10-2*01 TRBJ1-1*01 HLA-A*02:01 B2M MHCI CLGGLLTMV LMP2A EBV PMID:34811538 tetramer-sort yes amplicon-seq effector memory T cells healthy healthy_6 chip0516_290561 PBMC +14255 CSAGWRDLNTEAFF TRBV20-1*01 TRBJ1-1*01 HLA-A*02:01 B2M MHCI GILGFVFTL M1 InfluenzaA PMID:34811538 tetramer-sort yes amplicon-seq Naive T cells healthy healthy_6 chip0516_302281 PBMC +14256 CALRg?cGRGF TRAV14/DV4*01 TRAJ11*01,TRAJ14*01 CASSEGQAPNYGYTF TRBV2*01 TRBJ1-2*01 HLA-B*08:01 B2M MHCI NLIFKWIL G6PC2 HomoSapiens PMID:34811538 tetramer-sort yes amplicon-seq Naive T cells healthy healthy_9 chip0516_122219 PBMC +14257 CILPLAGGTSYGKLTF TRAV26-2*01 TRAJ52*01 CARSLGPAYEQYF TRBV7-8*01 TRBJ2-7*01 HLA-B*08:01 B2M MHCI FLRGRAYGL EBNA3A EBV PMID:34811538 tetramer-sort yes amplicon-seq effector memory T cells healthy healthy_8 chip0516_671949 PBMC +14259 CSARDRVGNGYTF TRBV20-1*01 TRBJ1-2*01 HLA-A*02:01 B2M MHCI GLCTLVAML BLMF1 EBV PMID:34811538 tetramer-sort yes amplicon-seq effector T cells healthy healthy_6 chip0516_486468 PBMC +14261 CASSGDGMNTEAFF TRBV10-2*01 TRBJ1-1*01 HLA-A*02:01 B2M MHCI CLGGLLTMV LMP2A EBV PMID:34811538 tetramer-sort yes amplicon-seq effector memory T cells healthy healthy_6 chip0516_665261 PBMC +14262 CASSLMGTGGLSEKLFF TRBV28*01 TRBJ1-4*01 HLA-B*08:01 B2M MHCI QAKWRLQTL EBNA3A EBV PMID:34811538 tetramer-sort yes amplicon-seq transitional T cells between effector and memory populations healthy healthy_8 chip0516_422214 PBMC +14263 CAVLMDSNYQLIW TRAV21*01 TRAJ33*01 HLA-A*02:01 B2M MHCI CLGGLLTMV LMP2A EBV PMID:34811538 tetramer-sort yes amplicon-seq effector memory T cells healthy healthy_6 chip0516_804639 PBMC +14264 CAVALSSKSTF TRAV8-3*01 TRAJ27*01 HLA-A*02:01 B2M MHCI CLGGLLTMV LMP2A EBV PMID:34811538 tetramer-sort yes amplicon-seq effector memory T cells healthy healthy_6 chip0516_91941 PBMC +14265 CAATFYGGSQGNLIF TRAV29/DV5*01 TRAJ42*01 CASSTQTAPDDTQYF TRBV7-9*01 TRBJ2-3*01 HLA-B*08:01 B2M MHCI RAKFKQLL BZLF1 EBV PMID:34811538 tetramer-sort yes amplicon-seq effector T cells healthy healthy_8 chip0516_797679 PBMC +14268 CSVEIGGYNEQFF TRBV29-1*01 TRBJ2-1*01 HLA-A*02:01 B2M MHCI SLISGMWLL VP2 RotavirusA PMID:34811538 tetramer-sort yes amplicon-seq transitional T cells between effector and memory populations healthy healthy_6 chip0516_526986 PBMC +14269 CASSGDGMNTEAFF TRBV10-2*01 TRBJ1-1*01 HLA-A*02:01 B2M MHCI CLGGLLTMV LMP2A EBV PMID:34811538 tetramer-sort yes amplicon-seq effector memory T cells healthy healthy_6 chip0516_880462 PBMC +14270 CASSGDGMNAEAFF TRBV10-2*01 TRBJ1-1*01 HLA-A*02:01 B2M MHCI CLGGLLTMV LMP2A EBV PMID:34811538 tetramer-sort yes amplicon-seq effector T cells healthy healthy_6 chip0516_494635 PBMC +14272 CAMMGSNFGNEKLTF TRAV12-3*01 TRAJ48*01 HLA-A*02:01 B2M MHCI LLAGIGTVPI PGT HomoSapiens PMID:34811538 tetramer-sort yes amplicon-seq Naive T cells healthy healthy_7 chip0516_169735 PBMC +14273 CASSLNRDRGPWEQYF TRBV5-6*01 TRBJ2-7*01 HLA-B*08:01 B2M MHCI QAKWRLQTL EBNA3A EBV PMID:34811538 tetramer-sort yes amplicon-seq central memory T cells healthy healthy_9 chip0516_72589 PBMC +14274 CASSLRSGGLEYF TRBV19*01 TRBJ2-7*01 HLA-A*02:01 B2M MHCI GILGFVFTL M1 InfluenzaA PMID:34811538 tetramer-sort yes amplicon-seq transitional T cells between effector and memory populations healthy healthy_7 chip0516_461618 PBMC +14277 CASSLGQAYEQYF TRBV7-8*01 TRBJ2-7*01 HLA-B*08:01 B2M MHCI FLRGRAYGL EBNA3A EBV PMID:34811538 tetramer-sort yes amplicon-seq effector memory T cells healthy healthy_8 chip0516_188625 PBMC +14278 CASSLGQAYEQYF TRBV7-8*01 TRBJ2-7*01 HLA-B*08:01 B2M MHCI FLRGRAYGL EBNA3A EBV PMID:34811538 tetramer-sort yes amplicon-seq central memory T cells healthy healthy_8 chip0516_683306 PBMC +14280 CASSGRATGELFF TRBV19*01 TRBJ2-2*01 HLA-A*02:01 B2M MHCI GILGFVFTL M1 InfluenzaA PMID:34811538 tetramer-sort yes amplicon-seq transitional T cells between effector and memory populations healthy healthy_7 chip0516_656317 PBMC +14281 CAGSLAGGNSPLHF TRBV5-1*01 TRBJ1-6*01 HLA-A*02:01 B2M MHCI IQATVMIIV ZNT8 HomoSapiens PMID:34811538 tetramer-sort yes amplicon-seq Naive T cells healthy healthy_7 chip0516_90856 PBMC +14282 CASSGDGMNTEAFF TRBV10-2*01 TRBJ1-1*01 HLA-A*02:01 B2M MHCI CLGGLLTMV LMP2A EBV PMID:34811538 tetramer-sort yes amplicon-seq effector memory T cells healthy healthy_6 chip0516_96634 PBMC +14283 CASSQFDLGAGDTQYF TRBV3-1*01 TRBJ2-3*01 HLA-B*08:01 B2M MHCI YAYAKWKL ZNT8 HomoSapiens PMID:34811538 tetramer-sort yes amplicon-seq Naive T cells healthy healthy_8 chip0516_744443 PBMC +14285 CAVTPHTNAGGTSYGKLTF TRAV8-3*01 TRAJ52*01 CASSPTGTGLRGYTF TRBV7-6*01 TRBJ1-2*01 HLA-B*08:01 B2M MHCI NLIFKWIL G6PC2 HomoSapiens PMID:34811538 tetramer-sort yes amplicon-seq Naive T cells healthy healthy_9 chip0516_85197 PBMC +14286 CASSQPGLNTEAFF TRBV5-4*01 TRBJ1-1*01 HLA-A*01:01 B2M MHCI HSNLNDATY NP InfluenzaA PMID:34811538 tetramer-sort yes amplicon-seq Naive T cells healthy healthy_9 chip0516_38824 PBMC +14288 CILPLAGGTSYGKLTF TRAV26-2*01 TRAJ52*01 CASSLGQAYEQYF TRBV7-8*01 TRBJ2-7*01 HLA-B*08:01 B2M MHCI FLRGRAYGL EBNA3A EBV PMID:34811538 tetramer-sort yes amplicon-seq effector memory T cells healthy healthy_8 chip0516_698832 PBMC +14290 CVVSPSNFGNEKLTF TRAV12-1*01 TRAJ48*01 CSARASLSMSTEAFF TRBV20-1*01 TRBJ1-1*01 HLA-A*02:01 B2M MHCI LLAGIGTVPI PGT HomoSapiens PMID:34811538 tetramer-sort yes amplicon-seq Naive T cells healthy healthy_7 chip0516_441774 PBMC +14291 CAVLMDSNYQLIW TRAV12-3*01,TRAV21*01 TRAJ33*01 HLA-A*02:01 B2M MHCI CLGGLLTMV LMP2A EBV PMID:34811538 tetramer-sort yes amplicon-seq effector memory T cells healthy healthy_6 chip0516_408435 PBMC +14293 CASSGDGMNTEAFF TRBV10-2*01 TRBJ1-1*01 HLA-A*02:01 B2M MHCI CLGGLLTMV LMP2A EBV PMID:34811538 tetramer-sort yes amplicon-seq effector T cells healthy healthy_6 chip0516_559267 PBMC +14296 CAVKGGELIF TRAV12-2*01 TRAJ23*01 CSLEGGTEASF TRBV29-1*01 TRBJ1-1*01 HLA-A*02:01 B2M MHCI LLAGIGTVPI PGT HomoSapiens PMID:34811538 tetramer-sort yes amplicon-seq Naive T cells healthy healthy_7 chip0516_479122 PBMC +14298 CILPIDGGTSYAKLPF TRAV26-2*01 TRAJ52*01 CASSLGQAYEQYF TRBV7-8*01 TRBJ2-7*01 HLA-B*08:01 B2M MHCI FLRGRAYGL EBNA3A EBV PMID:34811538 tetramer-sort yes amplicon-seq effector memory T cells healthy healthy_8 chip0516_23984 PBMC +14300 CASSSSGGQSTDTQYF TRBV12-3*01,TRBV12-4*01 TRBJ2-3*01 HLA-A*02:01 B2M MHCI MLYQHLLPL INSDRIP HomoSapiens PMID:34811538 tetramer-sort yes amplicon-seq Naive T cells healthy healthy_7 chip0516_67115 PBMC +14302 CAVGLTGNQFYF TRAV8-3*01 TRAJ49*01 HLA-B*08:01 B2M MHCI YAKWKLCSA ZNT8 HomoSapiens PMID:34811538 tetramer-sort yes amplicon-seq Naive T cells healthy healthy_8 chip0516_814704 PBMC +14303 CILPLAGGTSYGKLTF TRAV26-2*01 TRAJ52*01 CASSSGQAYEQYF TRBV7-8*01 TRBJ2-7*01 HLA-B*08:01 B2M MHCI FLRGRAYGL EBNA3A EBV PMID:34811538 tetramer-sort yes amplicon-seq central memory T cells healthy healthy_8 chip0516_412513 PBMC +14304 CASSLGQAYEQYF TRBV7-8*01 TRBJ2-7*01 HLA-B*08:01 B2M MHCI FLRGRAYGL EBNA3A EBV PMID:34811538 tetramer-sort yes amplicon-seq transitional T cells between effector and memory populations healthy healthy_8 chip0516_697922 PBMC +14305 CASSLGQAYEQYF TRBV7-8*01 TRBJ2-7*01 HLA-B*08:01 B2M MHCI FLRGRAYGL EBNA3A EBV PMID:34811538 tetramer-sort yes amplicon-seq central memory T cells healthy healthy_8 chip0516_322353 PBMC +14306 CAMKETSGSRLTF TRAV14/DV4*01 TRAJ10*01 HLA-B*08:01 B2M MHCI HARIKLKV PTPRN HomoSapiens PMID:34811538 tetramer-sort yes amplicon-seq Naive T cells healthy healthy_8 chip0516_875796 PBMC +14308 CASSGDGMNTEAFF TRBV10-2*01 TRBJ1-1*01 HLA-A*02:01 B2M MHCI CLGGLLTMV LMP2A EBV PMID:34811538 tetramer-sort yes amplicon-seq effector memory T cells healthy healthy_6 chip0516_288888 PBMC +14310 CALTEGcc??ggPATLLF TRAV19*01 TRAJ31*01 CASSSSAVIGDEQFF TRBV11-2*01 TRBJ2-1*01 HLA-A*02:01 B2M MHCI YVLDHLIVV BRLF1 EBV PMID:34811538 tetramer-sort yes amplicon-seq central memory T cells healthy healthy_6 chip0516_275136 PBMC +14311 CIVRNYGGSQGNLIF TRAV26-1*01 TRAJ42*01 HLA-B*08:01 B2M MHCI NLIFKWIL G6PC2 HomoSapiens PMID:34811538 tetramer-sort yes amplicon-seq natural killer-like T cells healthy healthy_8 chip0516_778146 PBMC +14312 CAVKTDTNAGKSTF TRAV12-2*01 TRAJ27*01 HLA-B*08:01 B2M MHCI FLRGRAYGL EBNA3A EBV PMID:34811538 tetramer-sort yes amplicon-seq effector memory T cells healthy healthy_8 chip0516_70732 PBMC +14313 CAMRtg??ccSLMF TRAV14/DV4*01 TRAJ31*01 HLA-B*08:01 B2M MHCI FLRGRAYGL EBNA3A EBV PMID:34811538 tetramer-sort yes amplicon-seq effector memory T cells healthy healthy_8 chip0516_745135 PBMC +14315 CASSLGAGTGETQYF TRBV7-9*01 TRBJ2-5*01 HLA-A*01:01 B2M MHCI PTHEEHLFY G6PC2 HomoSapiens PMID:34811538 tetramer-sort yes amplicon-seq Naive T cells healthy healthy_9 chip0516_372150 PBMC +14316 CILPLAGGTSYGKLTF TRAV26-2*01 TRAJ52*01 CASSLGQAYEQYF TRBV7-8*01 TRBJ2-7*01 HLA-B*08:01 B2M MHCI FLRGRAYGL EBNA3A EBV PMID:34811538 tetramer-sort yes amplicon-seq effector memory T cells healthy healthy_8 chip0516_707812 PBMC +14317 CAYRSPDSYNNNDMRF TRAV38-2/DV8*01 TRAJ43*01 HLA-A*01:01 B2M MHCI LVSDGGPNLY PB1 InfluenzaA PMID:34811538 tetramer-sort yes amplicon-seq Naive T cells healthy healthy_8 chip0516_746842 PBMC +14318 CAFLGTSYGKLTF TRAV38-1*01 TRAJ52*01 CASSLSPDRNPYGYTF TRBV11-1*01 TRBJ1-2*01 HLA-B*08:01 B2M MHCI WPTVRERM Nef HIV-1 PMID:34811538 tetramer-sort yes amplicon-seq Naive T cells healthy healthy_8 chip0516_193987 PBMC +14320 CAGPWWtg??ctTHKLIF TRAV35*01 TRAJ32*01 CASSLGTGGLDYEQYF TRBV7-9*01 TRBJ2-7*01 HLA-A*01:01 B2M MHCI HSNLNDATY NP InfluenzaA PMID:34811538 tetramer-sort yes amplicon-seq Naive T cells healthy healthy_8 chip0516_150108 PBMC +14321 CASSMIPDMNTEAFF TRBV19*01 TRBJ1-1*01 HLA-B*08:01 B2M MHCI RPIIRPATL NP InfluenzaA PMID:34811538 tetramer-sort yes amplicon-seq transitional T cells between effector and memory populations healthy healthy_9 chip0516_215746 PBMC +14323 CAVKGDTNASKSTF TRAV12-2*01 TRAJ27*01 HLA-B*08:01 B2M MHCI FLRGRAYGL EBNA3A EBV PMID:34811538 tetramer-sort yes amplicon-seq effector memory T cells healthy healthy_8 chip0516_388150 PBMC +14325 CAVRERRDKIIF TRAV1-1*01 TRAJ30*01 HLA-B*08:01 B2M MHCI LRLRLDQL GFAP HomoSapiens PMID:34811538 tetramer-sort yes amplicon-seq Naive T cells healthy healthy_8 chip0516_348284 PBMC +14327 CAVKTDTNAGKSTF TRAV12-2*01 TRAJ27*01 HLA-B*08:01 B2M MHCI FLRGRAYGL EBNA3A EBV PMID:34811538 tetramer-sort yes amplicon-seq effector memory T cells healthy healthy_8 chip0516_558282 PBMC +14328 CAVALSSKSTF TRAV8-3*01 TRAJ27*01 HLA-A*02:01 B2M MHCI CLGGLLTMV LMP2A EBV PMID:34811538 tetramer-sort yes amplicon-seq effector memory T cells healthy healthy_6 chip0516_391962 PBMC +14329 CAISEGLAGGNNEQFF TRBV10-3*01 TRBJ2-1*01 HLA-A*01:01 B2M MHCI LVSDGGPNLY PB1 InfluenzaA PMID:34811538 tetramer-sort yes amplicon-seq Naive T cells healthy healthy_8 chip0516_56891 PBMC +14330 CAMREGSTNAGKSTF TRAV14/DV4*01 TRAJ27*01 CASSPGSVAFGYTF TRBV27*01 TRBJ1-2*01 HLA-B*08:01 B2M MHCI YAKWKLCSA ZNT8 HomoSapiens PMID:34811538 tetramer-sort yes amplicon-seq Naive T cells healthy healthy_8 chip0516_429854 PBMC +14331 CSASDRESYGYTS TRBV20-1*01 TRBJ1-2*01 HLA-A*01:01 B2M MHCI CTELKLSDY NP InfluenzaA PMID:34811538 tetramer-sort yes amplicon-seq Naive T cells healthy healthy_10 chip0516_393103 PBMC +14333 CILPLAGGTSYGKLTF TRAV26-2*01 TRAJ52*01 CASSLGQAYEQYF TRBV7-8*01 TRBJ2-7*01 HLA-B*08:01 B2M MHCI FLRGRAYGL EBNA3A EBV PMID:34811538 tetramer-sort yes amplicon-seq effector memory T cells healthy healthy_8 chip0516_728830 PBMC +14337 CAVLMDSNYQLIW TRAV12-3*01,TRAV21*01 TRAJ33*01 CASSGDGMNTEAFF TRBV10-2*01 TRBJ1-1*01 HLA-A*02:01 B2M MHCI CLGGLLTMV LMP2A EBV PMID:34811538 tetramer-sort yes amplicon-seq effector memory T cells healthy healthy_6 chip0516_44107 PBMC +14338 CAVALSSKSTF TRAV8-3*01 TRAJ27*01 CSARDTMFATNEKLFF TRBV20-1*01 TRBJ1-4*01 HLA-B*08:01 B2M MHCI SLQKRGIV INS HomoSapiens PMID:34811538 tetramer-sort yes amplicon-seq Naive T cells healthy healthy_8 chip0516_880677 PBMC +14339 CALSEWEGAQKLVF TRAV19*01 TRAJ54*01 HLA-B*08:01 B2M MHCI RAKFKQLL BZLF1 EBV PMID:34811538 tetramer-sort yes amplicon-seq transitional T cells between effector and memory populations healthy healthy_9 chip0516_718132 PBMC +14340 CAVGRGAAGNKLTF TRAV8-3*01 TRAJ17*01 CSVGTGRHYEQYF TRBV29-1*01 TRBJ2-7*01 HLA-B*08:01 B2M MHCI YLKTNLFL G6PC2 HomoSapiens PMID:34811538 tetramer-sort yes amplicon-seq Naive T cells healthy healthy_8 chip0516_333442 PBMC +14341 CASSLGQAYEQYF TRBV7-8*01 TRBJ2-7*01 HLA-B*08:01 B2M MHCI FLRGRAYGL EBNA3A EBV PMID:34811538 tetramer-sort yes amplicon-seq transitional T cells between effector and memory populations healthy healthy_8 chip0516_39785 PBMC +14342 CASSGDGMNTEAFF TRBV10-2*01 TRBJ1-1*01 HLA-A*02:01 B2M MHCI CLGGLLTMV LMP2A EBV PMID:34811538 tetramer-sort yes amplicon-seq effector memory T cells healthy healthy_6 chip0516_551445 PBMC +14343 CAGARDSSYKLIF TRAV27*01 TRAJ12*01 CSAFRTRGVLTDTQYF TRBV20-1*01 TRBJ2-3*01 HLA-B*08:01 B2M MHCI ILKGKFQTA NP InfluenzaA PMID:34811538 tetramer-sort yes amplicon-seq Naive T cells healthy healthy_8 chip0516_779600 PBMC +14344 CAVALSSKSTF TRAV8-3*01 TRAJ27*01 HLA-A*02:01 B2M MHCI CLGGLLTMV LMP2A EBV PMID:34811538 tetramer-sort yes amplicon-seq effector memory T cells healthy healthy_6 chip0516_86403 PBMC +14346 CAVALSSKSTF TRAV8-3*01 TRAJ27*01 HLA-A*02:01 B2M MHCI CLGGLLTMV LMP2A EBV PMID:34811538 tetramer-sort yes amplicon-seq effector memory T cells healthy healthy_6 chip0516_151344 PBMC +14347 CAMDRYNFNKFYF TRAV39*01 TRAJ21*01 HLA-B*08:01 B2M MHCI MMIARFKM GAD2 HomoSapiens PMID:34811538 tetramer-sort yes amplicon-seq Naive T cells healthy healthy_9 chip0516_463418 PBMC +14348 CAMSADDSNYQLIW TRAV12-3*01 TRAJ33*01 HLA-B*08:01 B2M MHCI RAKFKQLL BZLF1 EBV PMID:34811538 tetramer-sort yes amplicon-seq effector T cells healthy healthy_9 chip0516_715710 PBMC +14349 CAVALSSKATF TRAV8-3*01 TRAJ27*01 CASSGDGMNTEAFF TRBV10-2*01 TRBJ1-1*01 HLA-A*02:01 B2M MHCI CLGGLLTMV LMP2A EBV PMID:34811538 tetramer-sort yes amplicon-seq effector memory T cells healthy healthy_6 chip0516_641225 PBMC +14350 CAVKTDTNAGKSTF TRAV12-2*01 TRAJ27*01 HLA-B*08:01 B2M MHCI FLRGRAYGL EBNA3A EBV PMID:34811538 tetramer-sort yes amplicon-seq effector memory T cells healthy healthy_8 chip0516_630715 PBMC +14351 CASNSAPNTEAFF TRBV19*01 TRBJ1-1*01 HLA-A*01:01 B2M MHCI PTEKGANEY ZNT8 HomoSapiens PMID:34811538 tetramer-sort yes amplicon-seq Naive T cells healthy healthy_8 chip0516_492816 PBMC +14353 CASSQEGGGGYEQYF TRBV4-2*01 TRBJ2-7*01 HLA-A*02:01 B2M MHCI YLQQNWWTL LMP1 EBV PMID:34811538 tetramer-sort yes amplicon-seq effector memory T cells healthy healthy_6 chip0516_71676 PBMC +14355 CVLPLAGGTSYGKLTF TRAV26-2*01 TRAJ52*01 CASSLGQAYEQYF TRBV7-8*01 TRBJ2-7*01 HLA-B*08:01 B2M MHCI FLRGRAYGL EBNA3A EBV PMID:34811538 tetramer-sort yes amplicon-seq effector memory T cells healthy healthy_8 chip0516_448728 PBMC +14356 CALRDDKIIF TRAV21*01 TRAJ30*01 HLA-B*08:01 B2M MHCI FSLKKGAAA GAD2 HomoSapiens PMID:34811538 tetramer-sort yes amplicon-seq Naive T cells healthy healthy_8 chip0516_326826 PBMC +14357 CASSLGQAYEQYF TRBV7-8*01 TRBJ2-7*01 HLA-B*08:01 B2M MHCI FLRGRAYGL EBNA3A EBV PMID:34811538 tetramer-sort yes amplicon-seq effector memory T cells healthy healthy_8 chip0516_74850 PBMC +14358 CASSLSVGAPYEQYF TRBV27*01 TRBJ2-7*01 HLA-A*02:01 B2M MHCI CINGVCWTV NS3 HCV PMID:34811538 tetramer-sort yes amplicon-seq Naive T cells healthy healthy_6 chip0516_21404 PBMC +14359 CAVALSSKSTF TRAV8-3*01 TRAJ27*01 WASSGDGMNTEAFF TRBV10-2*01 TRBJ1-1*01 HLA-A*02:01 B2M MHCI CLGGLLTMV LMP2A EBV PMID:34811538 tetramer-sort yes amplicon-seq effector memory T cells healthy healthy_6 chip0516_762767 PBMC +14360 CAVLMDSNYQLIW TRAV21*01 TRAJ33*01 HLA-A*02:01 B2M MHCI CLGGLLTMV LMP2A EBV PMID:34811538 tetramer-sort yes amplicon-seq effector memory T cells healthy healthy_6 chip0516_268725 PBMC +14361 CILPLAGGTSYGKLTF TRAV26-2*01 TRAJ52*01 HLA-B*08:01 B2M MHCI FLRGRAYGL EBNA3A EBV PMID:34811538 tetramer-sort yes amplicon-seq effector memory T cells healthy healthy_8 chip0516_216991 PBMC +14362 CASSLMGTGGLSEKLFF TRBV28*01 TRBJ1-4*01 HLA-B*08:01 B2M MHCI QAKWRLQTL EBNA3A EBV PMID:34811538 tetramer-sort yes amplicon-seq effector memory T cells healthy healthy_8 chip0516_745270 PBMC +14364 CASSQDSGHEQYF TRBV3-1*01 TRBJ2-7*01 HLA-B*08:01 B2M MHCI ELRSRYWAI NP InfluenzaA PMID:34811538 tetramer-sort yes amplicon-seq transitional T cells between effector and memory populations healthy healthy_10 chip0516_346801 PBMC +14365 PCSTP??aGNHIF TRAV13-1*01 TRAJ42*01 HLA-B*08:01 B2M MHCI FLRGRAYGL EBNA3A EBV PMID:34811538 tetramer-sort yes amplicon-seq effector memory T cells tet_neg chip0516_157660 PBMC +14366 CASSLGQAYEQYF TRBV7-8*01 TRBJ2-7*01 HLA-B*08:01 B2M MHCI FLRGRAYGL EBNA3A EBV PMID:34811538 tetramer-sort yes amplicon-seq effector T cells healthy healthy_8 chip0516_577668 PBMC +14367 CASSGDGMNTEAFF TRBV10-2*01 TRBJ1-1*01 HLA-A*02:01 B2M MHCI CLGGLLTMV LMP2A EBV PMID:34811538 tetramer-sort yes amplicon-seq effector memory T cells healthy healthy_6 chip0516_100911 PBMC +14369 CALKVDQAGTALIF TRAV9-2*01 TRAJ15*01 CASSWTNQPQHF TRBV7-9*01 TRBJ1-5*01 HLA-B*08:01 B2M MHCI YLKDQQLL gp160 HIV-1 PMID:34811538 tetramer-sort yes amplicon-seq Naive T cells healthy healthy_8 chip0516_719576 PBMC +14370 CILRK??tETLTF TRAV26-1*01 TRAJ48*01 HLA-B*08:01 B2M MHCI RPIIRPATL NP InfluenzaA PMID:34811538 tetramer-sort yes amplicon-seq transitional T cells between effector and memory populations healthy healthy_8 chip0516_344610 PBMC +14372 CASSLGQAYEQYF TRBV7-8*01 TRBJ2-7*01 HLA-B*08:01 B2M MHCI FLRGRAYGL EBNA3A EBV PMID:34811538 tetramer-sort yes amplicon-seq effector memory T cells healthy healthy_8 chip0516_683501 PBMC +14373 CASSLGQAYEQYF TRBV7-8*01 TRBJ2-7*01 HLA-B*08:01 B2M MHCI FLRGRAYGL EBNA3A EBV PMID:34811538 tetramer-sort yes amplicon-seq effector T cells healthy healthy_8 chip0516_56999 PBMC +14374 CAVALSSKSTF TRAV8-3*01 TRAJ27*01 HLA-A*02:01 B2M MHCI CLGGLLTMV LMP2A EBV PMID:34811538 tetramer-sort yes amplicon-seq effector memory T cells healthy healthy_6 chip0516_573959 PBMC +14375 CATEGDSGYSTLTF TRAV17*01 TRAJ11*01 CASSYQGGNYGYTF TRBV6-5*01 TRBJ1-2*01 HLA-A*02:01 B2M MHCI FLYALALLL LMP2 EBV PMID:34811538 tetramer-sort yes amplicon-seq central memory T cells healthy healthy_7 chip0516_436369 PBMC +14376 CASSLGTGNDYGYTF TRBV7-6*01 TRBJ1-2*01 HLA-A*01:01 B2M MHCI CTELKLSDY NP InfluenzaA PMID:34811538 tetramer-sort yes amplicon-seq transitional T cells between effector and memory populations healthy healthy_8 chip0516_761914 PBMC +14377 CAESIGYSGAGSYQLTF TRAV5*01 TRAJ28*01 HLA-B*08:01 B2M MHCI QAKWRLQTL EBNA3A EBV PMID:34811538 tetramer-sort yes amplicon-seq transitional T cells between effector and memory populations healthy healthy_9 chip0516_657099 PBMC +14380 CGTASMDSSYKLIF TRAV30*01 TRAJ12*01 CASGLPGTGPGHQPQHF TRBV12-5*01 TRBJ1-5*01 HLA-B*08:01 B2M MHCI NLIFKWIL G6PC2 HomoSapiens PMID:34811538 tetramer-sort yes amplicon-seq Naive T cells healthy healthy_8 chip0516_199060 PBMC +14381 CSVEDSTSGTYEQYF TRBV29-1*01 TRBJ2-7*01 HLA-A*02:01 B2M MHCI LLAGIGTVPI PGT HomoSapiens PMID:34811538 tetramer-sort yes amplicon-seq Naive T cells healthy healthy_7 chip0516_290836 PBMC +14382 CGADGKSag??gtSNYKLTF TRAV34*01 TRAJ53*01 HLA-A*02:01 B2M MHCI YLLEMLWRL LMP1 EBV PMID:34811538 tetramer-sort yes amplicon-seq central memory T cells healthy healthy_6 chip0516_385593 PBMC +14383 CAFMKYPSGc?g*QGAPPLVF TRAV38-1*01 TRAJ54*01 HLA-A*02:01 B2M MHCI GILGFVFTL M1 InfluenzaA PMID:34811538 tetramer-sort yes amplicon-seq transitional T cells between effector and memory populations healthy healthy_6 chip0516_305767 PBMC +14384 CASSQSPGGTQYF TRBV14*01 TRBJ2-5*01 HLA-A*02:01 B2M MHCI GLCTLVAML BLMF1 EBV PMID:34811538 tetramer-sort yes amplicon-seq effector T cells healthy healthy_7 chip0516_154639 PBMC +14385 CAVTLTLYSGAGSYQLTF TRAV21*01 TRAJ28*01 RASSLMGTGGLSEKLFF TRBV28*01 TRBJ1-4*01 HLA-B*08:01 B2M MHCI QAKWRLQTL EBNA3A EBV PMID:34811538 tetramer-sort yes amplicon-seq effector memory T cells healthy healthy_8 chip0516_823717 PBMC +14387 CASSGDGMNTEAFF TRBV10-2*01 TRBJ1-1*01 HLA-A*02:01 B2M MHCI CLGGLLTMV LMP2A EBV PMID:34811538 tetramer-sort yes amplicon-seq effector memory T cells healthy healthy_6 chip0516_79814 PBMC +14388 CASTGARGSYEQYF TRBV2*01 TRBJ2-7*01 HLA-A*01:01 B2M MHCI VTDAAHLLI ZNT8 HomoSapiens PMID:34811538 tetramer-sort yes amplicon-seq effector memory T cells healthy healthy_9 chip0516_112707 PBMC +14390 CASSQQGGNYGYTF TRBV6-1*01 TRBJ1-2*01 HLA-A*02:01 B2M MHCI FLYALALLL LMP2 EBV PMID:34811538 tetramer-sort yes amplicon-seq central memory T cells healthy healthy_6 chip0516_831197 PBMC +14393 CAVALSSKSTF TRAV8-3*01 TRAJ27*01 CASSGDGMNTEAFF TRBV10-2*01 TRBJ1-1*01 HLA-A*02:01 B2M MHCI CLGGLLTMV LMP2A EBV PMID:34811538 tetramer-sort yes amplicon-seq effector memory T cells healthy healthy_6 chip0516_266824 PBMC +14395 CASSGDGMNTEAFF TRBV10-2*01 TRBJ1-1*01 HLA-A*02:01 B2M MHCI CLGGLLTMV LMP2A EBV PMID:34811538 tetramer-sort yes amplicon-seq effector memory T cells healthy healthy_6 chip0516_114656 PBMC +14396 CILPLAGGTSYGKLTF TRAV26-2*01 TRAJ52*01 CASSLGQAYEQYF TRBV7-8*01 TRBJ2-7*01 HLA-B*08:01 B2M MHCI FLRGRAYGL EBNA3A EBV PMID:34811538 tetramer-sort yes amplicon-seq effector memory T cells healthy healthy_8 chip0516_33971 PBMC +14398 CALSSLPGYSSASKIIF TRAV19*01 TRAJ3*01 CASSFQGNTEAFF TRBV4-1*01 TRBJ1-1*01 HLA-B*08:01 B2M MHCI NLIFKWIL G6PC2 HomoSapiens PMID:34811538 tetramer-sort yes amplicon-seq central memory T cells healthy healthy_8 chip0516_692905 PBMC +14400 CAVLMDSNYQLIW TRAV12-3*01 TRAJ33*01 CASSGDGMNTEAFF TRBV10-2*01 TRBJ1-1*01 HLA-A*02:01 B2M MHCI CLGGLLTMV LMP2A EBV PMID:34811538 tetramer-sort yes amplicon-seq effector memory T cells healthy healthy_6 chip0516_866955 PBMC +14401 CASSGDGMNTEAFF TRBV10-2*01 TRBJ1-1*01 HLA-A*02:01 B2M MHCI CLGGLLTMV LMP2A EBV PMID:34811538 tetramer-sort yes amplicon-seq effector T cells healthy healthy_6 chip0516_552138 PBMC +14403 CILPLAGGTSYGKLTF TRAV26-2*01 TRAJ52*01 CASSLGQAYEQYF TRBV7-8*01 TRBJ2-7*01 HLA-B*08:01 B2M MHCI FLRGRAYGL EBNA3A EBV PMID:34811538 tetramer-sort yes amplicon-seq transitional T cells between effector and memory populations healthy healthy_8 chip0516_669869 PBMC +14404 CAMSGDNKIIF TRAV12-3*01 TRAJ30*01 CASSLGQAYEQYF TRBV7-8*01 TRBJ2-7*01 HLA-A*02:01 B2M MHCI LLAGIGTVPI PGT HomoSapiens PMID:34811538 tetramer-sort yes amplicon-seq Naive T cells healthy healthy_7 chip0516_611566 PBMC +14409 CASQGPVGAAPPQLF TRBV19*01 TRBJ1-5*01 HLA-A*02:01 B2M MHCI YVLDHLIVV BRLF1 EBV PMID:34811538 tetramer-sort yes amplicon-seq transitional T cells between effector and memory populations healthy healthy_6 chip0516_730499 PBMC +14413 CAVALSSKSTF TRAV8-3*01 TRAJ27*01 CASSGDGMNTEAFF TRBV10-2*01 TRBJ1-1*01 HLA-A*02:01 B2M MHCI CLGGLLTMV LMP2A EBV PMID:34811538 tetramer-sort yes amplicon-seq effector memory T cells healthy healthy_6 chip0516_736173 PBMC +14415 CASSLMGTGSLSEKLFF TRBV28*01 TRBJ1-4*01 HLA-B*08:01 B2M MHCI QAKWRLQTL EBNA3A EBV PMID:34811538 tetramer-sort yes amplicon-seq central memory T cells healthy healthy_8 chip0516_843366 PBMC +14416 CASPHTDVGGEKRFF TRBV4-3*01 TRBJ1-4*01 HLA-B*08:01 B2M MHCI YLKDQQLL gp160 HIV-1 PMID:34811538 tetramer-sort yes amplicon-seq Naive T cells healthy healthy_9 chip0516_596127 PBMC +14417 CAVALSSKSTF TRAV8-3*01 TRAJ27*01 CASSGDGMNTEAFF TRBV10-2*01 TRBJ1-1*01 HLA-A*02:01 B2M MHCI CLGGLLTMV LMP2A EBV PMID:34811538 tetramer-sort yes amplicon-seq effector memory T cells healthy healthy_6 chip0516_462841 PBMC +14418 CASSPPSg?gGSYEQYF TRBV6-1*01 TRBJ2-7*01 HLA-A*01:01 B2M MHCI GSHLVEALY INS HomoSapiens PMID:34811538 tetramer-sort yes amplicon-seq Naive T cells healthy healthy_9 chip0516_617758 PBMC +14419 CAVALSSKSTF TRAV8-3*01 TRAJ27*01 HLA-A*02:01 B2M MHCI CLGGLLTMV LMP2A EBV PMID:34811538 tetramer-sort yes amplicon-seq effector memory T cells healthy healthy_6 chip0516_475267 PBMC +14420 CVVNQYHgt??acNNNDMRF TRAV12-1*01 TRAJ43*01 HLA-A*01:01 B2M MHCI LTSLTILQLY G6PC2 HomoSapiens PMID:34811538 tetramer-sort yes amplicon-seq Naive T cells healthy healthy_8 chip0516_804592 PBMC +14421 CAMSAAGANSKLTF TRAV12-3*01 TRAJ56*01 CASSPPYNEQFF TRBV7-8*01 TRBJ2-1*01 HLA-A*02:01 B2M MHCI LLSLFSLWL ZNT8 HomoSapiens PMID:34811538 tetramer-sort yes amplicon-seq transitional T cells between effector and memory populations healthy healthy_6 chip0516_781324 PBMC +14422 CASATNAGKSTF TRAV17*01 TRAJ27*01 HLA-A*02:01 B2M MHCI RQFGPDWIVA ADH HomoSapiens PMID:34811538 tetramer-sort yes amplicon-seq central memory T cells healthy healthy_6 chip0516_653993 PBMC +14423 CILPLADGTSYGKLTF TRAV26-2*01 TRAJ52*01 CASSLGQAYEQYF TRBV7-8*01 TRBJ2-7*01 HLA-B*08:01 B2M MHCI FLRGRAYGL EBNA3A EBV PMID:34811538 tetramer-sort yes amplicon-seq effector memory T cells healthy healthy_8 chip0516_643651 PBMC +14424 CASSSGQGDNEQFF TRBV11-2*01 TRBJ2-1*01 HLA-A*02:01 B2M MHCI GLCTLVAML BLMF1 EBV PMID:34811538 tetramer-sort yes amplicon-seq central memory T cells healthy healthy_6 chip0516_362128 PBMC +14426 CILPLAGGTSYGKLTF TRAV26-2*01 TRAJ52*01 CASSLGQAYEQYF TRBV7-8*01 TRBJ2-7*01 HLA-B*08:01 B2M MHCI FLRGRAYGL EBNA3A EBV PMID:34811538 tetramer-sort yes amplicon-seq effector memory T cells healthy healthy_8 chip0516_789907 PBMC +14428 CASSQGKGDYAGELFF TRBV4-3*01 TRBJ2-2*01 HLA-B*08:01 B2M MHCI YAKWKLCSA ZNT8 HomoSapiens PMID:34811538 tetramer-sort yes amplicon-seq Naive T cells healthy healthy_8 chip0516_279955 PBMC +14429 CASSQDGHNTDTQYF TRBV4-1*01 TRBJ2-3*01 HLA-A*01:01 B2M MHCI CTELKLSDY NP InfluenzaA PMID:34811538 tetramer-sort yes amplicon-seq transitional T cells between effector and memory populations healthy healthy_8 chip0516_78599 PBMC +14430 CASSHGNYGYTF TRBV5-1*01 TRBJ1-2*01 HLA-A*02:01 B2M MHCI ALAGIGILTV MART1 HomoSapiens PMID:34811538 tetramer-sort yes amplicon-seq effector memory T cells healthy healthy_7 chip0516_28715 PBMC +14431 CSARDYEREVYNEQFF TRBV20-1*01 TRBJ2-1*01 HLA-B*08:01 B2M MHCI ALKCKGFHV NP InfluenzaA PMID:34811538 tetramer-sort yes amplicon-seq Naive T cells healthy healthy_9 chip0516_72488 PBMC +14432 CVGGAYSGAGSYQLTF TRAV12-1*01 TRAJ28*01 CASSYSSTGYGSTF TRBV6-5*01 TRBJ1-2*01 HLA-A*02:01 B2M MHCI DLTSFLLSL ZNT8 HomoSapiens PMID:34811538 tetramer-sort yes amplicon-seq transitional T cells between effector and memory populations healthy healthy_6 chip0516_809616 PBMC +14433 CAVGTRF TRAV12-2*01 TRAJ43*01 HLA-A*02:01 B2M MHCI LLAGIGTVPI PGT HomoSapiens PMID:34811538 tetramer-sort yes amplicon-seq effector T cells healthy healthy_7 chip0516_877688 PBMC +14434 CVVNIGASLLF TRAV12-1*01 TRAJ31*01 HLA-B*08:01 B2M MHCI YAYAKWKL ZNT8 HomoSapiens PMID:34811538 tetramer-sort yes amplicon-seq Naive T cells healthy healthy_8 chip0516_809012 PBMC +14438 CASSGDGMNTEAFF TRBV10-2*01 TRBJ1-1*01 HLA-A*02:01 B2M MHCI CLGGLLTMV LMP2A EBV PMID:34811538 tetramer-sort yes amplicon-seq effector memory T cells healthy healthy_6 chip0516_282653 PBMC +14439 CVVAQYNVNKFYF TRAV12-1*01 TRAJ21*01 HLA-B*08:01 B2M MHCI NLIFKWKSI G6PC2 HomoSapiens PMID:34811538 tetramer-sort yes amplicon-seq effector memory T cells healthy healthy_8 chip0516_46764 PBMC +14440 CATALGGNMLTF TRAV17*01 TRAJ39*01 CASSQTPNTGELFF TRBV4-1*01 TRBJ2-2*01 HLA-B*08:01 B2M MHCI YLKDQQLL gp160 HIV-1 PMID:34811538 tetramer-sort yes amplicon-seq central memory T cells healthy healthy_8 chip0516_644691 PBMC +14441 CAVALSSKSTF TRAV8-3*01 TRAJ27*01 HLA-A*02:01 B2M MHCI CLGGLLTMV LMP2A EBV PMID:34811538 tetramer-sort yes amplicon-seq effector memory T cells healthy healthy_6 chip0516_254468 PBMC +14442 CAVPSC??aGN*LTY TRAV8-4*01 TRAJ17*01 HLA-B*08:01 B2M MHCI YAFLHATDL GAD2 HomoSapiens PMID:34811538 tetramer-sort yes amplicon-seq Naive T cells healthy healthy_8 chip0516_641258 PBMC +14443 CASSWAGSAGGSDTQYF TRBV28*01 TRBJ2-3*01 HLA-A*02:01 B2M MHCI ALAGIGILTV MART1 HomoSapiens PMID:34811538 tetramer-sort yes amplicon-seq Naive T cells healthy healthy_6 chip0516_397851 PBMC +14444 CVAGLSGGSYIPTF TRAV12-1*01 TRAJ6*01 CASSQQGGTEAFF TRBV4-2*01 TRBJ1-1*01 HLA-A*02:01 B2M MHCI YLQQNWWTL LMP1 EBV PMID:34811538 tetramer-sort yes amplicon-seq effector memory T cells healthy healthy_7 chip0516_342199 PBMC +14446 CGTD*Scg?TGGKLIF TRAV30*01 TRAJ23*01 CASSAGGGAYEQYF TRBV9*01 TRBJ2-7*01 HLA-B*08:01 B2M MHCI FQQDKHYDL GAD2 HomoSapiens PMID:34811538 tetramer-sort yes amplicon-seq Naive T cells healthy healthy_8 chip0516_101000 PBMC +14447 YAPPKGF TRAV16*01 TRAJ37*01,TRAJ34*01 HLA-A*01:01 B2M MHCI STANTNMFTY GAD2 HomoSapiens PMID:34811538 tetramer-sort yes amplicon-seq Naive T cells healthy healthy_8 chip0516_51777 PBMC +14448 CSVGQALSHEQYF TRBV29-1*01 TRBJ2-7*01 HLA-A*02:01 B2M MHCI YVLDHLIVV BRLF1 EBV PMID:34811538 tetramer-sort yes amplicon-seq effector memory T cells healthy healthy_6 chip0516_822918 PBMC +14451 CAVALSSKSTF TRAV8-3*01 TRAJ27*01 CASSGAGMNTEAFF TRBV10-2*01 TRBJ1-1*01 HLA-A*02:01 B2M MHCI CLGGLLTMV LMP2A EBV PMID:34811538 tetramer-sort yes amplicon-seq effector memory T cells healthy healthy_6 chip0516_510159 PBMC +14453 CASSPQASGGWNEQFF TRBV13*01 TRBJ2-1*01 HLA-B*08:01 B2M MHCI RAKFKQLL BZLF1 EBV PMID:34811538 tetramer-sort yes amplicon-seq effector T cells healthy healthy_10 chip0516_685515 PBMC +14454 CASSLGQAYEQYF TRBV7-8*01 TRBJ2-7*01 HLA-B*08:01 B2M MHCI FLRGRAYGL EBNA3A EBV PMID:34811538 tetramer-sort yes amplicon-seq effector T cells healthy healthy_8 chip0516_595751 PBMC +14456 CASSGDGMNTEAFF TRBV10-2*01 TRBJ1-1*01 HLA-A*02:01 B2M MHCI CLGGLLTMV LMP2A EBV PMID:34811538 tetramer-sort yes amplicon-seq effector memory T cells healthy healthy_6 chip0516_639909 PBMC +14457 CARRGAGMNTPAFF TRBV10-2*01 TRBJ1-1*01 HLA-A*02:01 B2M MHCI CLGGLLTMV LMP2A EBV PMID:34811538 tetramer-sort yes amplicon-seq effector memory T cells healthy healthy_6 chip0516_636298 PBMC +14459 CASSGDGMNTEAFF TRBV10-2*01 TRBJ1-1*01 HLA-A*02:01 B2M MHCI CLGGLLTMV LMP2A EBV PMID:34811538 tetramer-sort yes amplicon-seq effector memory T cells healthy healthy_6 chip0516_8899 PBMC +14460 CATDWSSGGFKTIF TRAV17*01 TRAJ9*01 CASSSGNTGELFF TRBV12-3*01,TRBV12-4*01 TRBJ2-2*01 HLA-B*08:01 B2M MHCI WPTVRERM Nef HIV-1 PMID:34811538 tetramer-sort yes amplicon-seq Naive T cells healthy healthy_9 chip0516_538944 PBMC +14461 CASSSSALISDEQFF TRBV11-2*01 TRBJ2-1*01 HLA-A*02:01 B2M MHCI YVLDHLIVV BRLF1 EBV PMID:34811538 tetramer-sort yes amplicon-seq effector memory T cells healthy healthy_6 chip0516_414861 PBMC +14463 CAVNTGRRALTF TRAV12-2*01 TRAJ5*01 CASSFGLEENTEAFF TRBV7-6*01 TRBJ1-1*01 HLA-B*08:01 B2M MHCI RAKFKQLL BZLF1 EBV PMID:34811538 tetramer-sort yes amplicon-seq Naive T cells healthy healthy_8 chip0516_165100 PBMC +14464 CASSSSALISDEQFF TRBV11-2*01 TRBJ2-1*01 HLA-A*02:01 B2M MHCI YVLDHLIVV BRLF1 EBV PMID:34811538 tetramer-sort yes amplicon-seq effector memory T cells healthy healthy_6 chip0516_102437 PBMC +14465 CAVALSSKSTF TRAV8-3*01 TRAJ27*01 CASSGDGMNTEAFF TRBV10-2*01 TRBJ1-1*01 HLA-A*02:01 B2M MHCI CLGGLLTMV LMP2A EBV PMID:34811538 tetramer-sort yes amplicon-seq effector memory T cells healthy healthy_6 chip0516_115381 PBMC +14466 CATDAWNQAGTALIF TRAV17*01 TRAJ15*01 CASNAGTGTSPLHF TRBV9*01 TRBJ1-6*01 HLA-B*08:01 B2M MHCI FLVRSFYL PTPRN HomoSapiens PMID:34811538 tetramer-sort yes amplicon-seq Naive T cells healthy healthy_8 chip0516_775299 PBMC +14467 CVVRSDFGNEKLTF TRAV12-1*01 TRAJ48*01 HLA-A*01:01 B2M MHCI LTSLTILQLY G6PC2 HomoSapiens PMID:34811538 tetramer-sort yes amplicon-seq Naive T cells healthy healthy_8 chip0516_695392 PBMC +14468 CAVRtg??acKIIF TRAV8-1*01 TRAJ30*01 CASSSGQGDNEQFF TRBV11-3*01 TRBJ2-1*01 HLA-A*02:01 B2M MHCI GLCTLVAML BLMF1 EBV PMID:34811538 tetramer-sort yes amplicon-seq effector memory T cells healthy healthy_6 chip0516_486965 PBMC +14469 CSVGSGDYEQYF TRBV29-1*01 TRBJ2-7*01 HLA-B*08:01 B2M MHCI RAKFKQLL BZLF1 EBV PMID:34811538 tetramer-sort yes amplicon-seq effector memory T cells healthy healthy_8 chip0516_828327 PBMC +14470 CASSLSYGPEQYF TRBV27*01 TRBJ2-7*01 HLA-A*02:01 B2M MHCI ALAGIGILTV MART1 HomoSapiens PMID:34811538 tetramer-sort yes amplicon-seq Naive T cells healthy healthy_7 chip0516_293707 PBMC +14471 CASGAQGGGYGYTF TRBV6-1*01 TRBJ1-2*01 HLA-A*02:01 B2M MHCI FLYALALLL LMP2 EBV PMID:34811538 tetramer-sort yes amplicon-seq central memory T cells healthy healthy_6 chip0516_103613 PBMC +14472 CASTLSNFGNEKLTF TRAV12-3*01 TRAJ48*01 CASSSYHPGASGDSTDTQYF TRBV5-1*01 TRBJ2-3*01 HLA-A*02:01 B2M MHCI LLAGIGTVPI PGT HomoSapiens PMID:34811538 tetramer-sort yes amplicon-seq Naive T cells healthy healthy_7 chip0516_100173 PBMC +14474 CASSEDGMNTEAFF TRBV10-2*01 TRBJ1-1*01 HLA-A*02:01 B2M MHCI CLGGLLTMV LMP2A EBV PMID:34811538 tetramer-sort yes amplicon-seq effector T cells healthy healthy_6 chip0516_631684 PBMC +14475 CASSFGVGEGTEAFF TRBV7-3*01 TRBJ1-1*01 HLA-B*08:01 B2M MHCI RAKFKQLL BZLF1 EBV PMID:34811538 tetramer-sort yes amplicon-seq effector memory T cells healthy healthy_8 chip0516_549569 PBMC +14476 RASSGGGMDTEAFF TRBV10-2*01 TRBJ1-1*01 HLA-A*02:01 B2M MHCI CLGGLLTMV LMP2A EBV PMID:34811538 tetramer-sort yes amplicon-seq effector memory T cells healthy healthy_6 chip0516_16233 PBMC +14477 CAVSEDTGFQKLVF TRAV8-6*01 TRAJ8*01 HLA-B*08:01 B2M MHCI QAKWRLQTL EBNA3A EBV PMID:34811538 tetramer-sort yes amplicon-seq Naive T cells healthy healthy_9 chip0516_714974 PBMC +14480 CASSGDGMNTEAFF TRBV10-2*01 TRBJ1-1*01 HLA-A*02:01 B2M MHCI CLGGLLTMV LMP2A EBV PMID:34811538 tetramer-sort yes amplicon-seq effector memory T cells healthy healthy_6 chip0516_371825 PBMC +14481 CAVSARLMF TRAV12-2*01 TRAJ31*01 CASRLREGSSYNEQFF TRBV28*01 TRBJ2-1*01 HLA-A*02:01 B2M MHCI LLAGIGTVPI PGT HomoSapiens PMID:34811538 tetramer-sort yes amplicon-seq Naive T cells healthy healthy_7 chip0516_804089 PBMC +14484 CAGRVSGGTSGSRLTF TRAV35*01 TRAJ10*01 CAGSPRGWGPEQYF TRBV7-6*01 TRBJ2-7*01 HLA-B*08:01 B2M MHCI WPTVRERM Nef HIV-1 PMID:34811538 tetramer-sort yes amplicon-seq Naive T cells healthy healthy_8 chip0516_269038 PBMC +14485 CAWSSGSYNEQFF TRBV30*01 TRBJ2-1*01 HLA-B*08:01 B2M MHCI SRKHKWKL GAD2 HomoSapiens PMID:34811538 tetramer-sort yes amplicon-seq transitional T cells between effector and memory populations healthy healthy_9 chip0516_434245 PBMC +14486 CILPLAGGTSYGKLTF TRAV26-2*01 TRAJ52*01 CASSLGQAYEQYF TRBV7-8*01 TRBJ2-7*01 HLA-B*08:01 B2M MHCI FLRGRAYGL EBNA3A EBV PMID:34811538 tetramer-sort yes amplicon-seq transitional T cells between effector and memory populations healthy healthy_8 chip0516_381614 PBMC +14488 CASSGDGTNTEAFF TRBV10-2*01 TRBJ1-1*01 HLA-A*02:01 B2M MHCI CLGGLLTMV LMP2A EBV PMID:34811538 tetramer-sort yes amplicon-seq effector memory T cells healthy healthy_6 chip0516_457505 PBMC +14490 CLLPLAGGPSYGKLTF TRAV26-2*01 TRAJ52*01 CASSLGQAYEQYF TRBV7-8*01 TRBJ2-7*01 HLA-B*08:01 B2M MHCI FLRGRAYGL EBNA3A EBV PMID:34811538 tetramer-sort yes amplicon-seq effector memory T cells tet_neg chip0516_638894 PBMC +14492 CASSDWQGATYEQYF TRBV6-1*01 TRBJ2-7*01 HLA-A*01:01 B2M MHCI HSNLNDATY NP InfluenzaA PMID:34811538 tetramer-sort yes amplicon-seq Naive T cells healthy healthy_8 chip0516_148636 PBMC +14493 CALALVLa?tAGHIPTF TRAV6*01 TRAJ39*01 HLA-A*02:01 B2M MHCI LLFNILGGWV NS4B HCV PMID:34811538 tetramer-sort yes amplicon-seq Naive T cells healthy healthy_7 chip0516_845343 PBMC +14495 CASSSGQGDNEQFF TRBV11-3*01 TRBJ2-1*01 HLA-A*02:01 B2M MHCI GLCTLVAML BLMF1 EBV PMID:34811538 tetramer-sort yes amplicon-seq effector T cells healthy healthy_6 chip0516_665913 PBMC +14496 CAVALSSKSTF TRAV8-3*01 TRAJ27*01 HLA-A*02:01 B2M MHCI CLGGLLTMV LMP2A EBV PMID:34811538 tetramer-sort yes amplicon-seq effector memory T cells healthy healthy_6 chip0516_7302 PBMC +14497 CAVNMLVLNTDKLIF TRAV12-2*01 TRAJ34*01 CASSPRTSEYNEQFF TRBV4-1*01 TRBJ2-1*01 HLA-B*08:01 B2M MHCI RAKFKQLL BZLF1 EBV PMID:34811538 tetramer-sort yes amplicon-seq Naive T cells healthy healthy_9 chip0516_254670 PBMC +14498 CASSLVVGGGYNEQFF TRBV7-3*01 TRBJ2-1*01 HLA-B*08:01 B2M MHCI RAKFKQLL BZLF1 EBV PMID:34811538 tetramer-sort yes amplicon-seq effector memory T cells healthy healthy_9 chip0516_42158 PBMC +14499 CASSGDGMNTEAFF TRBV10-2*01 TRBJ1-1*01 HLA-A*02:01 B2M MHCI CLGGLLTMV LMP2A EBV PMID:34811538 tetramer-sort yes amplicon-seq central memory T cells healthy healthy_6 chip0516_164130 PBMC +14500 CAVALSSKSTF TRAV8-3*01 TRAJ27*01 HLA-A*02:01 B2M MHCI CLGGLLTMV LMP2A EBV PMID:34811538 tetramer-sort yes amplicon-seq effector memory T cells healthy healthy_6 chip0516_97957 PBMC +14501 CASSGDGMNTEAFF TRBV10-2*01 TRBJ1-1*01 HLA-A*02:01 B2M MHCI CLGGLLTMV LMP2A EBV PMID:34811538 tetramer-sort yes amplicon-seq effector memory T cells healthy healthy_6 chip0516_754093 PBMC +14502 CAMSPSNFGNEKLTF TRAV12-3*01 TRAJ48*01 HLA-A*02:01 B2M MHCI LLAGIGTVPI PGT HomoSapiens PMID:34811538 tetramer-sort yes amplicon-seq Naive T cells healthy healthy_7 chip0516_3443 PBMC +14503 CASSLRSTDTQYF TRBV19*01 TRBJ2-3*01 HLA-A*02:01 B2M MHCI GILGFVFTL M1 InfluenzaA PMID:34811538 tetramer-sort yes amplicon-seq transitional T cells between effector and memory populations healthy healthy_7 chip0516_179872 PBMC +14504 CASSGDGMNTEAFF TRBV10-2*01 TRBJ1-1*01 HLA-A*02:01 B2M MHCI CLGGLLTMV LMP2A EBV PMID:34811538 tetramer-sort yes amplicon-seq effector memory T cells healthy healthy_6 chip0516_117550 PBMC +14505 CAVRSPPLc?cSGTYKYIF TRAV41*01 TRAJ40*01 HLA-A*02:01 B2M MHCI RLLPLLALL PREINS HomoSapiens PMID:34811538 tetramer-sort yes amplicon-seq Naive T cells healthy healthy_6 chip0516_760485 PBMC +14507 RASSLGGDDRYF TRBV7-6*01 TRBJ2-7*01 HLA-A*02:01 B2M MHCI NLFLFLFAV IGRP HomoSapiens PMID:34811538 tetramer-sort yes amplicon-seq Naive T cells healthy healthy_6 chip0516_549738 PBMC +14509 LAASEGGADGLTF TRAV13-1*01 TRAJ45*01 YASTFLQg?g*GTEAFF TRBV5-1*01 TRBJ1-1*01 HLA-B*08:01 B2M MHCI RAKFKQLL BZLF1 EBV PMID:34811538 tetramer-sort yes amplicon-seq effector memory T cells healthy healthy_8 chip0516_840292 PBMC +14510 CASSLGQAYEQYF TRBV7-8*01 TRBJ2-7*01 HLA-B*08:01 B2M MHCI FLRGRAYGL EBNA3A EBV PMID:34811538 tetramer-sort yes amplicon-seq effector T cells healthy healthy_8 chip0516_617301 PBMC +14511 CASSRMGGTNEQFF TRBV7-8*01 TRBJ2-1*01 HLA-A*02:01 B2M MHCI LLAGIGTVPI PGT HomoSapiens PMID:34811538 tetramer-sort yes amplicon-seq Naive T cells healthy healthy_7 chip0516_51251 PBMC +14512 CILPLAGGTSYGKLTF TRAV26-2*01 TRAJ52*01 HLA-B*08:01 B2M MHCI FLRGRAYGL EBNA3A EBV PMID:34811538 tetramer-sort yes amplicon-seq central memory T cells healthy healthy_8 chip0516_215546 PBMC +14513 CASSGDGMNTEAFF TRBV10-2*01 TRBJ1-1*01 HLA-A*02:01 B2M MHCI CLGGLLTMV LMP2A EBV PMID:34811538 tetramer-sort yes amplicon-seq effector memory T cells healthy healthy_6 chip0516_799839 PBMC +14515 CAVQAPa?tGQKLLF TRAV20*01 TRAJ16*01 CASRSKGGHYNEQFF TRBV12-3*01,TRBV12-4*01 TRBJ2-1*01 HLA-B*08:01 B2M MHCI RAKFKQLL BZLF1 EBV PMID:34811538 tetramer-sort yes amplicon-seq transitional T cells between effector and memory populations healthy healthy_8 chip0516_819091 PBMC +14516 CILPLAGGTSYGKLTF TRAV26-2*01 TRAJ52*01 CASSLGQAYEQYF TRBV7-8*01 TRBJ2-7*01 HLA-B*08:01 B2M MHCI FLRGRAYGL EBNA3A EBV PMID:34811538 tetramer-sort yes amplicon-seq transitional T cells between effector and memory populations healthy healthy_8 chip0516_731142 PBMC +14517 CASSQRSSYNEQFF TRBV19*01 TRBJ2-1*01 HLA-A*02:01 B2M MHCI GILGFVFTL M1 InfluenzaA PMID:34811538 tetramer-sort yes amplicon-seq transitional T cells between effector and memory populations healthy healthy_7 chip0516_169331 PBMC +14518 CASSGDGMNTEAFF TRBV10-2*01 TRBJ1-1*01 HLA-A*02:01 B2M MHCI CLGGLLTMV LMP2A EBV PMID:34811538 tetramer-sort yes amplicon-seq effector memory T cells healthy healthy_6 chip0516_118848 PBMC +14519 CASSTQTAPDDTQYF TRBV7-9*01 TRBJ2-3*01 HLA-B*08:01 B2M MHCI RAKFKQLL BZLF1 EBV PMID:34811538 tetramer-sort yes amplicon-seq effector memory T cells healthy healthy_8 chip0516_710956 PBMC +14521 CILPLAGGTSYGKLTF TRAV26-2*01 TRAJ52*01 CASSLGQAYEQYF TRBV7-8*01 TRBJ2-7*01 HLA-B*08:01 B2M MHCI FLRGRAYGL EBNA3A EBV PMID:34811538 tetramer-sort yes amplicon-seq effector memory T cells healthy healthy_8 chip0516_482996 PBMC +14522 CAVRDEta??acNARLMF TRAV3*01 TRAJ31*01 CASSGRSADTQYF TRBV19*01 TRBJ2-3*01 HLA-A*02:01 B2M MHCI GILGFVFTL M1 InfluenzaA PMID:34811538 tetramer-sort yes amplicon-seq transitional T cells between effector and memory populations healthy healthy_7 chip0516_815566 PBMC +14523 CASRLSGGEDNEQFF TRBV7-9*01 TRBJ2-1*01 HLA-B*08:01 B2M MHCI YAYAKWKL ZNT8 HomoSapiens PMID:34811538 tetramer-sort yes amplicon-seq effector memory T cells healthy healthy_8 chip0516_559827 PBMC +14525 CILPLAGGTSYGKLTF TRAV26-2*01 TRAJ52*01 CASSLGQAYEQYF TRBV7-8*01 TRBJ2-7*01 HLA-B*08:01 B2M MHCI FLRGRAYGL EBNA3A EBV PMID:34811538 tetramer-sort yes amplicon-seq effector T cells healthy healthy_8 chip0516_358461 PBMC +14526 CASSLGQAYEQYF TRBV7-8*01 TRBJ2-7*01 HLA-B*08:01 B2M MHCI FLRGRAYGL EBNA3A EBV PMID:34811538 tetramer-sort yes amplicon-seq effector memory T cells healthy healthy_8 chip0516_58774 PBMC +14527 CASSLARNYEQYF TRBV5-6*01 TRBJ2-7*01 HLA-A*02:01 B2M MHCI LLAGIGTVPI PGT HomoSapiens PMID:34811538 tetramer-sort yes amplicon-seq Naive T cells healthy healthy_6 chip0516_781828 PBMC +14528 CASSPPYNEQFF TRBV7-8*01 TRBJ2-1*01 HLA-A*02:01 B2M MHCI LLSLFSLWL ZNT8 HomoSapiens PMID:34811538 tetramer-sort yes amplicon-seq transitional T cells between effector and memory populations healthy healthy_6 chip0516_883521 PBMC +14529 CAVALSSKSTF TRAV8-3*01 TRAJ27*01 HLA-A*02:01 B2M MHCI CLGGLLTMV LMP2A EBV PMID:34811538 tetramer-sort yes amplicon-seq effector T cells healthy healthy_6 chip0516_470557 PBMC +14531 CAVQARTca?NSGYALNF TRAV20*01 TRAJ41*01 HLA-A*02:01 B2M MHCI YVLDHLIVV BRLF1 EBV PMID:34811538 tetramer-sort yes amplicon-seq effector T cells healthy healthy_6 chip0516_831179 PBMC +14533 CLVGDTKLa?cF*NVPLTI TRAV4*01 TRAJ48*01 CASSQGQLEAFF TRBV12-3*01,TRBV12-4*01 TRBJ1-1*01 HLA-B*08:01 B2M MHCI YAKWKLCSA ZNT8 HomoSapiens PMID:34811538 tetramer-sort yes amplicon-seq Naive T cells healthy healthy_8 chip0516_160249 PBMC +14538 CASSIGAGQQETQYF TRBV19*01 TRBJ2-5*01 HLA-A*02:01 B2M MHCI FLFAVGFYL IGRP HomoSapiens PMID:34811538 tetramer-sort yes amplicon-seq Naive T cells healthy healthy_6 chip0516_12311 PBMC +14539 CAVALSSKSTF TRAV8-3*01 TRAJ27*01 HLA-A*02:01 B2M MHCI CLGGLLTMV LMP2A EBV PMID:34811538 tetramer-sort yes amplicon-seq effector T cells healthy healthy_6 chip0516_556835 PBMC +14540 CALKVGNAGNMLTF TRAV19*01 TRAJ39*01 CASSSPDSHYEQYF TRBV7-9*01 TRBJ2-7*01 HLA-B*08:01 B2M MHCI NLIFKWKSI G6PC2 HomoSapiens PMID:34811538 tetramer-sort yes amplicon-seq Naive T cells healthy healthy_8 chip0516_255629 PBMC +14542 CASSQDGQDGEKLFF TRBV4-3*01 TRBJ1-4*01 HLA-A*02:01 B2M MHCI LLSLFSLWL ZNT8 HomoSapiens PMID:34811538 tetramer-sort yes amplicon-seq Naive T cells healthy healthy_6 chip0516_171947 PBMC +14543 CAVDMRF TRAV1-2*01 TRAJ43*01 HLA-B*08:01 B2M MHCI ALKCKGFHV NP InfluenzaA PMID:34811538 tetramer-sort yes amplicon-seq central memory T cells healthy healthy_8 chip0516_384633 PBMC +14544 CATLERGGMNTEAFF TRBV10-3*01 TRBJ1-1*01 HLA-B*08:01 B2M MHCI HLKRNIVV GFAP HomoSapiens PMID:34811538 tetramer-sort yes amplicon-seq Naive T cells healthy healthy_9 chip0516_731759 PBMC +14545 CAVTMNTGNQFYF TRAV41*01 TRAJ49*01 HLA-B*08:01 B2M MHCI LLNVKLAL GFAP HomoSapiens PMID:34811538 tetramer-sort yes amplicon-seq Naive T cells healthy healthy_8 chip0516_807312 PBMC +14547 CASSGDGMNTEAFF TRBV10-2*01 TRBJ1-1*01 HLA-A*02:01 B2M MHCI CLGGLLTMV LMP2A EBV PMID:34811538 tetramer-sort yes amplicon-seq effector memory T cells healthy healthy_6 chip0516_386902 PBMC +14548 CAVALSSKSTF TRAV8-3*01 TRAJ27*01 HLA-A*02:01 B2M MHCI CLGGLLTMV LMP2A EBV PMID:34811538 tetramer-sort yes amplicon-seq effector memory T cells healthy healthy_6 chip0516_858068 PBMC +14551 CASSLMGTGGLSEKLFF TRBV28*01 TRBJ1-4*01 HLA-B*08:01 B2M MHCI QAKWRLQTL EBNA3A EBV PMID:34811538 tetramer-sort yes amplicon-seq central memory T cells healthy healthy_8 chip0516_322940 PBMC +14552 CAGERDDKIIF TRAV29/DV5*01 TRAJ30*01 HLA-A*02:01 B2M MHCI LLFNILGGWV NS4B HCV PMID:34811538 tetramer-sort yes amplicon-seq Naive T cells healthy healthy_7 chip0516_11885 PBMC +14553 CASSLNWGGTYEQYF TRBV7-3*01 TRBJ2-7*01 HLA-B*08:01 B2M MHCI LNHLKATPI IAPP HomoSapiens PMID:34811538 tetramer-sort yes amplicon-seq Naive T cells healthy healthy_8 chip0516_803443 PBMC +14555 CAMSAAGANSKLTF TRAV12-3*01 TRAJ56*01 HLA-A*02:01 B2M MHCI LLSLFSLWL ZNT8 HomoSapiens PMID:34811538 tetramer-sort yes amplicon-seq transitional T cells between effector and memory populations healthy healthy_6 chip0516_446879 PBMC +14557 CASSLGPEQFF TRBV12-3*01,TRBV12-4*01 TRBJ2-1*01 HLA-A*02:01 B2M MHCI ALAGIGILTV MART1 HomoSapiens PMID:34811538 tetramer-sort yes amplicon-seq Naive T cells healthy healthy_7 chip0516_47320 PBMC +14558 CAVLMDSNYQLIW TRAV12-3*01 TRAJ33*01 CASSGDGMNTEAFF TRBV10-2*01 TRBJ1-1*01 HLA-A*02:01 B2M MHCI CLGGLLTMV LMP2A EBV PMID:34811538 tetramer-sort yes amplicon-seq effector T cells healthy healthy_6 chip0516_472985 PBMC +14559 CAMRELDRGGSQGNLIF TRAV14/DV4*01 TRAJ42*01 HLA-B*08:01 B2M MHCI YAYAKWKL ZNT8 HomoSapiens PMID:34811538 tetramer-sort yes amplicon-seq Naive T cells healthy healthy_8 chip0516_471853 PBMC +14560 CAVLMDSNYQLIW TRAV21*01 TRAJ33*01 CASSGDEMNTEAFF TRBV10-2*01 TRBJ1-1*01 HLA-A*02:01 B2M MHCI CLGGLLTMV LMP2A EBV PMID:34811538 tetramer-sort yes amplicon-seq effector memory T cells healthy healthy_6 chip0516_613119 PBMC +14561 CILPLAGGTSYGKLTF TRAV26-2*01 TRAJ52*01 CASSLGQAYEQYF TRBV7-8*01 TRBJ2-7*01 HLA-B*08:01 B2M MHCI FLRGRAYGL EBNA3A EBV PMID:34811538 tetramer-sort yes amplicon-seq effector T cells healthy healthy_8 chip0516_639528 PBMC +14562 CAVALSSKSTF TRAV8-3*01 TRAJ27*01 HLA-A*02:01 B2M MHCI CLGGLLTMV LMP2A EBV PMID:34811538 tetramer-sort yes amplicon-seq effector memory T cells healthy healthy_6 chip0516_604248 PBMC +14564 YILPLAGGTGYVKLTF TRAV26-2*01 TRAJ52*01 CASSLGQAYEQYF TRBV7-8*01 TRBJ2-7*01 HLA-B*08:01 B2M MHCI FLRGRAYGL EBNA3A EBV PMID:34811538 tetramer-sort yes amplicon-seq central memory T cells healthy healthy_8 chip0516_420030 PBMC +14565 CASSGDGMNTEAFF TRBV10-2*01 TRBJ1-1*01 HLA-A*02:01 B2M MHCI CLGGLLTMV LMP2A EBV PMID:34811538 tetramer-sort yes amplicon-seq effector memory T cells healthy healthy_6 chip0516_130455 PBMC +14566 LRQQRGR??aMNTEAFF TRBV10-2*01 TRBJ1-1*01 HLA-A*02:01 B2M MHCI CLGGLLTMV LMP2A EBV PMID:34811538 tetramer-sort yes amplicon-seq effector memory T cells healthy healthy_6 chip0516_21193 PBMC +14567 CASSGGGVIAEAFF TRBV10-2*01 TRBJ1-1*01 HLA-A*02:01 B2M MHCI CLGGLLTMV LMP2A EBV PMID:34811538 tetramer-sort yes amplicon-seq effector memory T cells healthy healthy_6 chip0516_22209 PBMC +14568 LAASAGI*at?GGSQGHLIF TRAV29/DV5*01 TRAJ42*01 CASSQEWTAMATQYF TRBV4-1*01 TRBJ2-5*01 HLA-B*08:01 B2M MHCI WPTVRERM Nef HIV-1 PMID:34811538 tetramer-sort yes amplicon-seq Naive T cells healthy healthy_8 chip0516_818184 PBMC +14569 CASSLQGITEAFF TRBV5-6*01 TRBJ1-1*01 HLA-B*08:01 B2M MHCI SRKHKWKL GAD2 HomoSapiens PMID:34811538 tetramer-sort yes amplicon-seq Naive T cells healthy healthy_9 chip0516_306155 PBMC +14570 CASSLGQAYEQYF TRBV7-8*01 TRBJ2-7*01 HLA-B*08:01 B2M MHCI FLRGRAYGL EBNA3A EBV PMID:34811538 tetramer-sort yes amplicon-seq effector memory T cells healthy healthy_8 chip0516_717372 PBMC +14571 CAARAQKLVF TRAV14/DV4*01 TRAJ54*01 HLA-B*08:01 B2M MHCI RPIIRPATL NP InfluenzaA PMID:34811538 tetramer-sort yes amplicon-seq transitional T cells between effector and memory populations healthy healthy_8 chip0516_447769 PBMC +14572 CAPAAPSAYRTLTL TRAV17*01 TRAJ11*01 HLA-A*02:01 B2M MHCI FLYALALLL LMP2 EBV PMID:34811538 tetramer-sort yes amplicon-seq central memory T cells healthy healthy_6 chip0516_273363 PBMC +14573 CASSYYRERNTEAFF TRBV5-6*01 TRBJ1-1*01 HLA-A*02:01 B2M MHCI FLYALALLL LMP2 EBV PMID:34811538 tetramer-sort yes amplicon-seq central memory T cells healthy healthy_6 chip0516_696706 PBMC +14574 CAMGYSSASKIIF TRAV12-3*01 TRAJ3*01 HLA-B*08:01 B2M MHCI CPLSKILL LMP2A EBV PMID:34811538 tetramer-sort yes amplicon-seq Naive T cells healthy healthy_8 chip0516_546866 PBMC +14578 CASSYLGGGFGYTF TRBV6-5*01 TRBJ1-2*01 HLA-A*02:01 B2M MHCI FLYALALLL LMP2 EBV PMID:34811538 tetramer-sort yes amplicon-seq central memory T cells healthy healthy_6 chip0516_361265 PBMC +14579 CASSLMGTGGLSEKLFF TRBV28*01 TRBJ1-4*01 HLA-B*08:01 B2M MHCI QAKWRLQTL EBNA3A EBV PMID:34811538 tetramer-sort yes amplicon-seq effector memory T cells healthy healthy_8 chip0516_487699 PBMC +14580 CASSVLDGPRGKLFF TRBV19*01 TRBJ1-4*01 HLA-A*02:01 B2M MHCI GILGFVFTL M1 InfluenzaA PMID:34811538 tetramer-sort yes amplicon-seq transitional T cells between effector and memory populations healthy healthy_7 chip0516_860296 PBMC +14583 CVLPLAGGASYGKLTF TRAV26-2*01 TRAJ52*01 CASSLGQAYEQYF TRBV7-8*01 TRBJ2-7*01 HLA-B*08:01 B2M MHCI FLRGRAYGL EBNA3A EBV PMID:34811538 tetramer-sort yes amplicon-seq effector T cells healthy healthy_8 chip0516_241448 PBMC +14585 CVVPASGGSYIPTF TRAV12-1*01 TRAJ6*01 HLA-A*02:01 B2M MHCI YLQQNWWTL LMP1 EBV PMID:34811538 tetramer-sort yes amplicon-seq central memory T cells healthy healthy_6 chip0516_565604 PBMC +14586 CATVGTSGYSTLTF TRAV17*01 TRAJ11*01 CASSGQGGHYGYTF TRBV6-1*01 TRBJ1-2*01 HLA-A*02:01 B2M MHCI FLYALALLL LMP2 EBV PMID:34811538 tetramer-sort yes amplicon-seq central memory T cells healthy healthy_7 chip0516_482736 PBMC +14587 CASSPPETGVNEQFF TRBV3-1*01 TRBJ2-1*01 HLA-A*02:01 B2M MHCI LLAGIGTVPI PGT HomoSapiens PMID:34811538 tetramer-sort yes amplicon-seq Naive T cells healthy healthy_6 chip0516_490858 PBMC +14588 CSVDPGARGGNEQFF TRBV29-1*01 TRBJ2-1*01 HLA-A*02:01 B2M MHCI VVTGVLVYL ZNT8 HomoSapiens PMID:34811538 tetramer-sort yes amplicon-seq Naive T cells healthy healthy_7 chip0516_604361 PBMC +14589 CILPLAGGTSYGKLTF TRAV26-2*01 TRAJ52*01 CASSLGQAYEQYF TRBV7-8*01 TRBJ2-7*01 HLA-B*08:01 B2M MHCI FLRGRAYGL EBNA3A EBV PMID:34811538 tetramer-sort yes amplicon-seq effector memory T cells healthy healthy_8 chip0516_194403 PBMC +14591 CAMKDFQKLVF TRAV8-1*01 TRAJ8*01 HLA-A*02:01 B2M MHCI YVLDHLIVV BRLF1 EBV PMID:34811538 tetramer-sort yes amplicon-seq effector memory T cells healthy healthy_6 chip0516_690459 PBMC +14592 CARRFPTgg??ggGTDTQYF TRBV5-6*01 TRBJ2-3*01 HLA-A*02:01 B2M MHCI YLLEMLWRL LMP1 EBV PMID:34811538 tetramer-sort yes amplicon-seq central memory T cells healthy healthy_6 chip0516_341822 PBMC +14593 CALSDSWGKLQF TRAV19*01 TRAJ24*01 HLA-B*08:01 B2M MHCI RVKEKYQHL gp160 HIV-1 PMID:34811538 tetramer-sort yes amplicon-seq Naive T cells healthy healthy_8 chip0516_137775 PBMC +14595 CAVRDPGATNTLIF TRAV1-2*01 TRAJ32*01 CASSWGTVNTEAFF TRBV5-1*01 TRBJ1-1*01 HLA-B*08:01 B2M MHCI EAKQKGFVPF GAD2 HomoSapiens PMID:34811538 tetramer-sort yes amplicon-seq Naive T cells healthy healthy_8 chip0516_272566 PBMC +14598 CAGAPYGGSQGNLIF TRAV27*01 TRAJ42*01 CASSHGNYGYTF TRBV5-1*01 TRBJ1-2*01 HLA-A*02:01 B2M MHCI ALAGIGILTV MART1 HomoSapiens PMID:34811538 tetramer-sort yes amplicon-seq effector memory T cells healthy healthy_7 chip0516_324863 PBMC +14599 CAGASEgg??gaAQKLVF TRAV27*01 TRAJ54*01 HLA-A*02:01 B2M MHCI LLAGIGTVPI PGT HomoSapiens PMID:34811538 tetramer-sort yes amplicon-seq Naive T cells healthy healthy_7 chip0516_532145 PBMC +14601 CASSGDGMNTEAFS TRBV10-2*01 TRBJ1-1*01 HLA-A*02:01 B2M MHCI CLGGLLTMV LMP2A EBV PMID:34811538 tetramer-sort yes amplicon-seq effector T cells healthy healthy_6 chip0516_626081 PBMC +14603 CAVALSSKSTF TRAV8-3*01 TRAJ27*01 CASSGDGMNTEAFF TRBV10-2*01 TRBJ1-1*01 HLA-A*02:01 B2M MHCI CLGGLLTMV LMP2A EBV PMID:34811538 tetramer-sort yes amplicon-seq effector memory T cells healthy healthy_6 chip0516_258982 PBMC +14604 CAVALSSKSTF TRAV8-3*01 TRAJ27*01 CASSGDGMNTEAFF TRBV10-2*01 TRBJ1-1*01 HLA-A*02:01 B2M MHCI CLGGLLTMV LMP2A EBV PMID:34811538 tetramer-sort yes amplicon-seq effector memory T cells healthy healthy_6 chip0516_879104 PBMC +14607 CASSLMGTGGLSEKLFF TRBV28*01 TRBJ1-4*01 HLA-B*08:01 B2M MHCI QAKWRLQTL EBNA3A EBV PMID:34811538 tetramer-sort yes amplicon-seq effector T cells healthy healthy_8 chip0516_605365 PBMC +14610 CAVALSSKSTF TRAV8-3*01 TRAJ27*01 CASSGDGMNTEAFF TRBV10-2*01 TRBJ1-1*01 HLA-A*02:01 B2M MHCI CLGGLLTMV LMP2A EBV PMID:34811538 tetramer-sort yes amplicon-seq effector T cells healthy healthy_6 chip0516_66221 PBMC +14611 CASSGDGMNTEAFF TRBV10-2*01 TRBJ1-1*01 HLA-A*02:01 B2M MHCI CLGGLLTMV LMP2A EBV PMID:34811538 tetramer-sort yes amplicon-seq effector memory T cells healthy healthy_6 chip0516_309316 PBMC +14612 CAVKTDTNAGKSTF TRAV12-2*01 TRAJ27*01 HLA-B*08:01 B2M MHCI FLRGRAYGL EBNA3A EBV PMID:34811538 tetramer-sort yes amplicon-seq effector memory T cells healthy healthy_8 chip0516_285688 PBMC +14614 CAVLMDSNYQLIW TRAV21*01 TRAJ33*01 HLA-A*02:01 B2M MHCI CLGGLLTMV LMP2A EBV PMID:34811538 tetramer-sort yes amplicon-seq effector memory T cells healthy healthy_6 chip0516_306840 PBMC +14615 CAVTGGERSGGSRSLLTF TRAV12-2*01 TRAJ53*01 HLA-A*02:01 B2M MHCI YLLEMLWRL LMP1 EBV PMID:34811538 tetramer-sort yes amplicon-seq transitional T cells between effector and memory populations healthy healthy_6 chip0516_317213 PBMC +14616 CSVEEWQGGTQYF TRBV29-1*01 TRBJ2-5*01 HLA-B*08:01 B2M MHCI QAKWRLQTL EBNA3A EBV PMID:34811538 tetramer-sort yes amplicon-seq Naive T cells healthy healthy_8 chip0516_515681 PBMC +14617 CAATYNTDKLIF TRAV21*01 TRAJ34*01 CASSLGGLAYEQYF TRBV27*01 TRBJ2-7*01 HLA-A*02:01 B2M MHCI ALGIGILTV MART1 HomoSapiens PMID:34811538 tetramer-sort yes amplicon-seq Naive T cells healthy healthy_7 chip0516_201685 PBMC +14618 CAVALSSKSTF TRAV8-3*01 TRAJ27*01 HLA-A*02:01 B2M MHCI CLGGLLTMV LMP2A EBV PMID:34811538 tetramer-sort yes amplicon-seq effector memory T cells healthy healthy_6 chip0516_241616 PBMC +14619 CAVALSSKSTF TRAV8-3*01 TRAJ27*01 HLA-A*02:01 B2M MHCI CLGGLLTMV LMP2A EBV PMID:34811538 tetramer-sort yes amplicon-seq effector memory T cells healthy healthy_6 chip0516_176859 PBMC +14621 CALSDTGRRALTF TRAV9-2*01 TRAJ5*01 HLA-B*08:01 B2M MHCI NLIFKWKSI G6PC2 HomoSapiens PMID:34811538 tetramer-sort yes amplicon-seq Naive T cells healthy healthy_9 chip0516_136487 PBMC +14622 CASSQVRGIETQYF TRBV14*01 TRBJ2-5*01 HLA-A*02:01 B2M MHCI LLAGIGTVPI PGT HomoSapiens PMID:34811538 tetramer-sort yes amplicon-seq Naive T cells healthy healthy_7 chip0516_62830 PBMC +14625 CAASANAGNNRKLIW TRAV29/DV5*01 TRAJ38*01 HLA-B*08:01 B2M MHCI RAKFKQLL BZLF1 EBV PMID:34811538 tetramer-sort yes amplicon-seq effector memory T cells healthy healthy_9 chip0516_110768 PBMC +14626 CARGGDSSYKLIF TRAV16*01 TRAJ12*01 CASSLLASTDTQYF TRBV7-2*01 TRBJ2-3*01 HLA-B*08:01 B2M MHCI HLKRNIVV GFAP HomoSapiens PMID:34811538 tetramer-sort yes amplicon-seq Naive T cells healthy healthy_10 chip0516_423799 PBMC +14627 CASSSGQAYEQYF TRBV7-8*01 TRBJ2-7*01 HLA-B*08:01 B2M MHCI FLRGRAYGL EBNA3A EBV PMID:34811538 tetramer-sort yes amplicon-seq effector memory T cells healthy healthy_8 chip0516_204847 PBMC +14628 CAVREYNFNKFYF TRAV1-2*01 TRAJ21*01 HLA-A*01:01 B2M MHCI LTSLTILQLY G6PC2 HomoSapiens PMID:34811538 tetramer-sort yes amplicon-seq Naive T cells healthy healthy_8 chip0516_197854 PBMC +14629 CATEGASGYSTLTF TRAV17*01 TRAJ11*01 HLA-A*02:01 B2M MHCI FLYALALLL LMP2 EBV PMID:34811538 tetramer-sort yes amplicon-seq central memory T cells healthy healthy_6 chip0516_204533 PBMC +14632 CASSMTFYEQYF TRBV14*01 TRBJ2-7*01 HLA-B*08:01 B2M MHCI RPIIRPATL NP InfluenzaA PMID:34811538 tetramer-sort yes amplicon-seq Naive T cells healthy healthy_8 chip0516_440467 PBMC +14634 CAVRDMPDSNYQLIW TRAV3*01 TRAJ33*01 CASSPGHLAGIYEQYS TRBV3-1*01 TRBJ2-7*01 HLA-A*02:01 B2M MHCI LLAGIGTVPI PGT HomoSapiens PMID:34811538 tetramer-sort yes amplicon-seq Naive T cells healthy healthy_6 chip0516_311963 PBMC +14636 CASSLGQAYEQYF TRBV7-8*01 TRBJ2-7*01 HLA-B*08:01 B2M MHCI FLRGRAYGL EBNA3A EBV PMID:34811538 tetramer-sort yes amplicon-seq effector memory T cells healthy healthy_8 chip0516_222276 PBMC +14637 CATEGDSGYSTLTF TRAV17*01 TRAJ11*01 CASSQQGGNYGYTF TRBV6-1*01 TRBJ1-2*01 HLA-A*02:01 B2M MHCI FLYALALLL LMP2 EBV PMID:34811538 tetramer-sort yes amplicon-seq effector memory T cells healthy healthy_6 chip0516_737801 PBMC +14638 CAVALSSKSTF TRAV8-3*01 TRAJ27*01 HLA-A*02:01 B2M MHCI CLGGLLTMV LMP2A EBV PMID:34811538 tetramer-sort yes amplicon-seq effector memory T cells healthy healthy_6 chip0516_728765 PBMC +14640 YAENHALHF TRAV5*01,TRAV23/DV6*01 TRAJ41*01 HLA-A*02:01 B2M MHCI GLCTLVAML BLMF1 EBV PMID:34811538 tetramer-sort yes amplicon-seq effector T cells healthy healthy_6 chip0516_419033 PBMC +14642 CARRKGcc??ggHARIMF TRAV19*01 TRAJ31*01 HLA-A*02:01 B2M MHCI YVLDHLIVV BRLF1 EBV PMID:34811538 tetramer-sort yes amplicon-seq effector T cells healthy healthy_6 chip0516_152042 PBMC +14643 CAGATVEDYKLSF TRAV27*01 TRAJ20*01 CASSLGTGGYIDEQYF TRBV11-2*01 TRBJ2-7*01 HLA-A*02:01 B2M MHCI IQATVMIIV ZNT8 HomoSapiens PMID:34811538 tetramer-sort yes amplicon-seq Naive T cells healthy healthy_6 chip0516_294448 PBMC +14644 CASSSILGGSSPYEQYF TRBV13*01 TRBJ2-7*01 HLA-A*02:01 B2M MHCI YLLEMLWRL LMP1 EBV PMID:34811538 tetramer-sort yes amplicon-seq central memory T cells healthy healthy_6 chip0516_196141 PBMC +14646 CAMSAAGANSKLTF TRAV12-3*01 TRAJ56*01 CASSLGAGTGETQYF TRBV7-9*01 TRBJ2-5*01 HLA-A*02:01 B2M MHCI LLSLFSLWL ZNT8 HomoSapiens PMID:34811538 tetramer-sort yes amplicon-seq transitional T cells between effector and memory populations healthy healthy_6 chip0516_525462 PBMC +14648 CAWGRAPGELFF TRBV30*01 TRBJ2-2*01 HLA-A*02:01 B2M MHCI YLLPGWKL VP3 RotavirusA PMID:34811538 tetramer-sort yes amplicon-seq Naive T cells healthy healthy_7 chip0516_849282 PBMC +14650 CASSLGQAYEQYF TRBV7-8*01 TRBJ2-7*01 HLA-B*08:01 B2M MHCI FLRGRAYGL EBNA3A EBV PMID:34811538 tetramer-sort yes amplicon-seq central memory T cells healthy healthy_8 chip0516_308716 PBMC +14653 CALSGTNTGNQFYF TRAV19*01 TRAJ49*01 HLA-B*08:01 B2M MHCI YAYAKWKL ZNT8 HomoSapiens PMID:34811538 tetramer-sort yes amplicon-seq Naive T cells healthy healthy_9 chip0516_2955 PBMC +14654 CILPLAGGTSYGKLTF TRAV26-2*01 TRAJ52*01 CASSLGQAYEQYF TRBV7-8*01 TRBJ2-7*01 HLA-B*08:01 B2M MHCI FLRGRAYGL EBNA3A EBV PMID:34811538 tetramer-sort yes amplicon-seq central memory T cells healthy healthy_8 chip0516_740623 PBMC +14655 CILPLAGGTSYGKLTF TRAV26-2*01 TRAJ52*01 CASSLGQAYEQYF TRBV7-8*01 TRBJ2-7*01 HLA-B*08:01 B2M MHCI FLRGRAYGL EBNA3A EBV PMID:34811538 tetramer-sort yes amplicon-seq effector memory T cells healthy healthy_8 chip0516_399121 PBMC +14657 CAIKEAGNTPLVF TRAV12-3*01 TRAJ29*01 CASSPERGTYNEQFF TRBV12-3*01,TRBV12-4*01 TRBJ2-1*01 HLA-B*08:01 B2M MHCI YAYAKWKL ZNT8 HomoSapiens PMID:34811538 tetramer-sort yes amplicon-seq Naive T cells healthy healthy_8 chip0516_324134 PBMC +14658 CAVALSSKSTF TRAV8-3*01 TRAJ27*01 CASSGDGMNTEAFF TRBV10-2*01 TRBJ1-1*01 HLA-A*02:01 B2M MHCI CLGGLLTMV LMP2A EBV PMID:34811538 tetramer-sort yes amplicon-seq effector memory T cells healthy healthy_6 chip0516_424833 PBMC +14659 CASSGDGMNTEAFF TRBV10-2*01 TRBJ1-1*01 HLA-A*02:01 B2M MHCI CLGGLLTMV LMP2A EBV PMID:34811538 tetramer-sort yes amplicon-seq effector memory T cells healthy healthy_6 chip0516_34328 PBMC +14660 CASSGDGMNTEAFF TRBV10-2*01 TRBJ1-1*01 HLA-A*02:01 B2M MHCI CLGGLLTMV LMP2A EBV PMID:34811538 tetramer-sort yes amplicon-seq effector memory T cells healthy healthy_6 chip0516_300964 PBMC +14661 CASSHGNYGYTF TRBV5-1*01 TRBJ1-2*01 HLA-A*02:01 B2M MHCI LLAGIGTVPI PGT HomoSapiens PMID:34811538 tetramer-sort yes amplicon-seq effector T cells healthy healthy_7 chip0516_294729 PBMC +14663 CASSGVGRTTDAFF TRBV10-2*01 TRBJ1-1*01 HLA-A*02:01 B2M MHCI CLGGLLTMV LMP2A EBV PMID:34811538 tetramer-sort yes amplicon-seq effector memory T cells healthy healthy_6 chip0516_693423 PBMC +14664 CASSSTGNTIYF TRBV28*01 TRBJ1-3*01 HLA-A*02:01 B2M MHCI VVTGVLVYL ZNT8 HomoSapiens PMID:34811538 tetramer-sort yes amplicon-seq Naive T cells healthy healthy_7 chip0516_227665 PBMC +14665 CASSSGQAYEQYF TRBV7-8*01 TRBJ2-7*01 HLA-B*08:01 B2M MHCI FLRGRAYGL EBNA3A EBV PMID:34811538 tetramer-sort yes amplicon-seq effector memory T cells healthy healthy_8 chip0516_340567 PBMC +14666 CAVAINTNAGKSTF TRAV8-3*01 TRAJ27*01 HLA-A*02:01 B2M MHCI LLSLFSLWL ZNT8 HomoSapiens PMID:34811538 tetramer-sort yes amplicon-seq Naive T cells healthy healthy_7 chip0516_245578 PBMC +14668 CASSLGQAYEQYF TRBV7-8*01 TRBJ2-7*01 HLA-B*08:01 B2M MHCI FLRGRAYGL EBNA3A EBV PMID:34811538 tetramer-sort yes amplicon-seq effector memory T cells healthy healthy_8 chip0516_679810 PBMC +14670 CVVNPLLg?gFCKATDL TRAV12-1*01 TRAJ22*01 CASTTTSGGAWTGELFF TRBV2*01 TRBJ2-2*01 HLA-B*08:01 B2M MHCI QAKWRLQTL EBNA3A EBV PMID:34811538 tetramer-sort yes amplicon-seq Naive T cells healthy healthy_9 chip0516_267228 PBMC +14672 CAMNVADSNYKLIF TRAV14/DV4*01 TRAJ12*01 CASSLAQ??tPLYGYTF TRBV7-6*01 TRBJ1-2*01 HLA-A*01:01 B2M MHCI VTDAAHLLI ZNT8 HomoSapiens PMID:34811538 tetramer-sort yes amplicon-seq Naive T cells healthy healthy_8 chip0516_269875 PBMC +14673 CAVTLTLYSGAGSYQLTF TRAV21*01 TRAJ28*01 CASSLMGTGGLSEKLFF TRBV28*01 TRBJ1-4*01 HLA-B*08:01 B2M MHCI QAKWRLQTL EBNA3A EBV PMID:34811538 tetramer-sort yes amplicon-seq effector memory T cells healthy healthy_8 chip0516_153668 PBMC +14674 CASFARGct?RGNQPQQF TRBV7-2*01 TRBJ1-5*01 HLA-B*08:01 B2M MHCI QAKWRLQTL EBNA3A EBV PMID:34811538 tetramer-sort yes amplicon-seq central memory T cells healthy healthy_9 chip0516_769547 PBMC +14675 CASSGDGMNTEAFF TRBV10-2*01 TRBJ1-1*01 HLA-A*02:01 B2M MHCI CLGGLLTMV LMP2A EBV PMID:34811538 tetramer-sort yes amplicon-seq effector memory T cells healthy healthy_6 chip0516_875743 PBMC +14678 CAARPRGQKLLF TRAV13-1*01 TRAJ16*01 CASSQSPGREDTEAFF TRBV4-1*01 TRBJ1-1*01 HLA-B*08:01 B2M MHCI CPLSKILL LMP2A EBV PMID:34811538 tetramer-sort yes amplicon-seq Naive T cells healthy healthy_8 chip0516_708051 PBMC +14679 CAVALSSKSTF TRAV8-3*01 TRAJ27*01 HLA-A*02:01 B2M MHCI CLGGLLTMV LMP2A EBV PMID:34811538 tetramer-sort yes amplicon-seq effector memory T cells healthy healthy_6 chip0516_115923 PBMC +14682 CASRQLEPQAFF TRBV30*01 TRBJ1-1*01 HLA-A*02:01 B2M MHCI YLLPGWKL VP3 RotavirusA PMID:34811538 tetramer-sort yes amplicon-seq Naive T cells healthy healthy_7 chip0516_436009 PBMC +14684 CILPLAGGTSYGKLTF TRAV26-2*01 TRAJ52*01 HLA-B*08:01 B2M MHCI FLRGRAYGL EBNA3A EBV PMID:34811538 tetramer-sort yes amplicon-seq effector T cells healthy healthy_8 chip0516_380056 PBMC +14685 CILPLAGGTRSGQLPF TRAV26-2*01 TRAJ52*01 CASSLGQAYEQYF TRBV7-8*01 TRBJ2-7*01 HLA-B*08:01 B2M MHCI FLRGRAYGL EBNA3A EBV PMID:34811538 tetramer-sort yes amplicon-seq effector memory T cells healthy healthy_8 chip0516_404125 PBMC +14686 CASSLGQAYEQYF TRBV7-8*01 TRBJ2-7*01 HLA-B*08:01 B2M MHCI FLRGRAYGL EBNA3A EBV PMID:34811538 tetramer-sort yes amplicon-seq effector memory T cells healthy healthy_8 chip0516_510229 PBMC +14687 CATEGDSGYSTLTF TRAV17*01 TRAJ11*01 HLA-A*02:01 B2M MHCI FLYALALLL LMP2 EBV PMID:34811538 tetramer-sort yes amplicon-seq central memory T cells healthy healthy_6 chip0516_109369 PBMC +14688 CATEGDSGYSTLTF TRAV17*01 TRAJ11*01 HLA-A*02:01 B2M MHCI FLYALALLL LMP2 EBV PMID:34811538 tetramer-sort yes amplicon-seq effector T cells healthy healthy_6 chip0516_492595 PBMC +14689 CASSGAGMNTEAFF TRBV10-2*01 TRBJ1-1*01 HLA-A*02:01 B2M MHCI CLGGLLTMV LMP2A EBV PMID:34811538 tetramer-sort yes amplicon-seq effector memory T cells healthy healthy_6 chip0516_132608 PBMC +14692 CASSSMGETKRYF TRBV7-2*01 TRBJ2-7*01 HLA-A*02:01 B2M MHCI LLAGIGTVPI PGT HomoSapiens PMID:34811538 tetramer-sort yes amplicon-seq Naive T cells healthy healthy_7 chip0516_860182 PBMC +14693 CAALNQAGTALIF TRAV12-2*01 TRAJ15*01 CASSEVATTDTQYF TRBV25-1*01 TRBJ2-3*01 HLA-A*02:01 B2M MHCI ILSAHVATA ZNT8 HomoSapiens PMID:34811538 tetramer-sort yes amplicon-seq Naive T cells healthy healthy_7 chip0516_260068 PBMC +14695 CASRGLVGSAGELFF TRBV19*01 TRBJ2-2*01 HLA-A*02:01 B2M MHCI YVLDHLIVV BRLF1 EBV PMID:34811538 tetramer-sort yes amplicon-seq effector memory T cells healthy healthy_6 chip0516_592296 PBMC +14698 CASSLGQAYEQYF TRBV7-8*01 TRBJ2-7*01 HLA-B*08:01 B2M MHCI FLRGRAYGL EBNA3A EBV PMID:34811538 tetramer-sort yes amplicon-seq effector memory T cells healthy healthy_8 chip0516_835016 PBMC +14699 CAVLMNSNYQLIW TRAV12-3*01 TRAJ33*01 HLA-A*02:01 B2M MHCI CLGGLLTMV LMP2A EBV PMID:34811538 tetramer-sort yes amplicon-seq effector memory T cells healthy healthy_6 chip0516_673929 PBMC +14701 CASGQFYYNEQFF TRBV6-1*01 TRBJ2-1*01 HLA-B*08:01 B2M MHCI RAKFKQLL BZLF1 EBV PMID:34811538 tetramer-sort yes amplicon-seq effector T cells healthy healthy_8 chip0516_759122 PBMC +14703 CAAFKPGGGNKLTF TRAV12-2*01 TRAJ10*01 HLA-B*08:01 B2M MHCI MMIARFKM GAD2 HomoSapiens PMID:34811538 tetramer-sort yes amplicon-seq Naive T cells healthy healthy_8 chip0516_384959 PBMC +14704 CVVSERDTGRRALTF TRAV8-2*01 TRAJ5*01 HLA-A*02:01 B2M MHCI RGPGRAFVTI GP160 HIV-1 PMID:34811538 tetramer-sort yes amplicon-seq Naive T cells healthy healthy_6 chip0516_3605 PBMC +14705 CALSEAYSGAGSYQLTF TRAV19*01 TRAJ28*01 HLA-B*08:01 B2M MHCI QAKWRLQTL EBNA3A EBV PMID:34811538 tetramer-sort yes amplicon-seq Naive T cells healthy healthy_9 chip0516_30144 PBMC +14706 CILPLAGGTSYGKLTF TRAV26-2*01 TRAJ52*01 CASSLGQAYEQYF TRBV7-8*01 TRBJ2-7*01 HLA-B*08:01 B2M MHCI FLRGRAYGL EBNA3A EBV PMID:34811538 tetramer-sort yes amplicon-seq effector T cells healthy healthy_8 chip0516_629051 PBMC +14707 CSAPCPPHNEQFF TRBV20-1*01 TRBJ2-1*01 HLA-A*02:01 B2M MHCI YVLDHLIVV BRLF1 EBV PMID:34811538 tetramer-sort yes amplicon-seq effector T cells healthy healthy_6 chip0516_296068 PBMC +14710 CAVLMDSNYQLIW TRAV12-3*01 TRAJ33*01 HLA-A*02:01 B2M MHCI CLGGLLTMV LMP2A EBV PMID:34811538 tetramer-sort yes amplicon-seq effector T cells healthy healthy_6 chip0516_787828 PBMC +14712 CASSGDGMNTEAFF TRBV10-2*01 TRBJ1-1*01 HLA-A*02:01 B2M MHCI CLGGLLTMV LMP2A EBV PMID:34811538 tetramer-sort yes amplicon-seq effector T cells healthy healthy_6 chip0516_78243 PBMC +14714 CARSTELAGVSLGETQYF TRBV28*01 TRBJ2-5*01 HLA-A*02:01 B2M MHCI LLAGIGTVPI PGT HomoSapiens PMID:34811538 tetramer-sort yes amplicon-seq Naive T cells healthy healthy_7 chip0516_451906 PBMC +14715 CASSGDGMNTEAFF TRBV10-2*01 TRBJ1-1*01 HLA-A*02:01 B2M MHCI CLGGLLTMV LMP2A EBV PMID:34811538 tetramer-sort yes amplicon-seq effector memory T cells healthy healthy_6 chip0516_31450 PBMC +14716 RAVFcg?HRFYF TRAV41*01 TRAJ49*01 HLA-B*08:01 B2M MHCI QAKWRLQTL EBNA3A EBV PMID:34811538 tetramer-sort yes amplicon-seq effector T cells healthy healthy_8 chip0516_696704 PBMC +14717 CSAPDRDEEGQPQHF TRBV20-1*01 TRBJ1-5*01 HLA-A*02:01 B2M MHCI VMNILLQYVV GAD65 HomoSapiens PMID:34811538 tetramer-sort yes amplicon-seq transitional T cells between effector and memory populations healthy healthy_6 chip0516_550098 PBMC +14718 CALSG??cGDMRF TRAV16*01 TRAJ43*01 HLA-B*08:01 B2M MHCI RPIIRPATL NP InfluenzaA PMID:34811538 tetramer-sort yes amplicon-seq transitional T cells between effector and memory populations healthy healthy_8 chip0516_67276 PBMC +14719 CASSGDGMNTEAFS TRBV10-2*01 TRBJ1-1*01 HLA-A*02:01 B2M MHCI CLGGLLTMV LMP2A EBV PMID:34811538 tetramer-sort yes amplicon-seq effector T cells healthy healthy_6 chip0516_401227 PBMC +14720 CAAPRW??cNNQLIF TRAV8-1*01 TRAJ4*01 HLA-A*02:01 B2M MHCI ALWMRLLPL PREINS HomoSapiens PMID:34811538 tetramer-sort yes amplicon-seq Naive T cells healthy healthy_7 chip0516_139605 PBMC +14723 CAVLMDSNYQLIW TRAV21*01 TRAJ33*01 CASSGAGMNTEAFF TRBV10-2*01 TRBJ1-1*01 HLA-A*02:01 B2M MHCI CLGGLLTMV LMP2A EBV PMID:34811538 tetramer-sort yes amplicon-seq effector memory T cells healthy healthy_6 chip0516_425184 PBMC +14724 CASSSGQGDNEQFF TRBV11-3*01 TRBJ2-1*01 HLA-A*02:01 B2M MHCI GLCTLVAML BLMF1 EBV PMID:34811538 tetramer-sort yes amplicon-seq effector memory T cells healthy healthy_6 chip0516_499445 PBMC +14726 CASSLGQAYEQYF TRBV7-8*01 TRBJ2-7*01 HLA-B*08:01 B2M MHCI FLRGRAYGL EBNA3A EBV PMID:34811538 tetramer-sort yes amplicon-seq effector memory T cells healthy healthy_8 chip0516_756554 PBMC +14729 CVVPSHYGGSHGPLIF TRAV10*01 TRAJ42*01 CASSPGVYEQYF TRBV7-7*01 TRBJ2-7*01 HLA-A*02:01 B2M MHCI PLTFGWCYKL NEF InfluenzaA PMID:34811538 tetramer-sort yes amplicon-seq Naive T cells healthy healthy_7 chip0516_832180 PBMC +14730 CAFTLNDYKLSF TRAV9-2*01 TRAJ20*01 CASSGTVSNQPQHF TRBV6-1*01 TRBJ1-5*01 HLA-A*01:01 B2M MHCI PTHEEHLFY G6PC2 HomoSapiens PMID:34811538 tetramer-sort yes amplicon-seq Naive T cells healthy healthy_8 chip0516_868606 PBMC +14731 CASSGDGMNTEAFF TRBV10-2*01 TRBJ1-1*01 HLA-A*02:01 B2M MHCI CLGGLLTMV LMP2A EBV PMID:34811538 tetramer-sort yes amplicon-seq effector memory T cells healthy healthy_6 chip0516_752903 PBMC +14736 CATEGDSGYSTPTF TRAV17*01 TRAJ11*01 CASSQQGGNYGYTF TRBV6-1*01 TRBJ1-2*01 HLA-A*02:01 B2M MHCI FLYALALLL LMP2 EBV PMID:34811538 tetramer-sort yes amplicon-seq effector memory T cells healthy healthy_6 chip0516_296796 PBMC +14737 CAMSPDSSYKLIF TRAV14/DV4*01 TRAJ12*01 CASSQFMGDTNYGYTF TRBV3-1*01 TRBJ1-2*01 HLA-A*02:01 B2M MHCI GILGFVFTL M1 InfluenzaA PMID:34811538 tetramer-sort yes amplicon-seq transitional T cells between effector and memory populations healthy healthy_7 chip0516_783460 PBMC +14738 CAEDHALNF TRAV23/DV6*01 TRAJ41*01 CASSSGQGDNEQFF TRBV11-3*01 TRBJ2-1*01 HLA-A*02:01 B2M MHCI GLCTLVAML BLMF1 EBV PMID:34811538 tetramer-sort yes amplicon-seq effector T cells healthy healthy_6 chip0516_778434 PBMC +14742 CAVLLARPYQFIW TRAV21*01 TRAJ33*01 HLA-A*02:01 B2M MHCI CLGGLLTMV LMP2A EBV PMID:34811538 tetramer-sort yes amplicon-seq effector memory T cells healthy healthy_6 chip0516_719621 PBMC +14744 CAAGGAGSYQLTF TRAV13-1*01 TRAJ28*01 CAWSYGPLEQYF TRBV30*01 TRBJ2-7*01 HLA-B*08:01 B2M MHCI YAYAKWKL ZNT8 HomoSapiens PMID:34811538 tetramer-sort yes amplicon-seq Naive T cells healthy healthy_9 chip0516_269345 PBMC +14745 CSVGADGTNEKLFF TRBV29-1*01 TRBJ1-4*01 HLA-A*02:01 B2M MHCI GLCTLVAML BLMF1 EBV PMID:34811538 tetramer-sort yes amplicon-seq effector T cells healthy healthy_6 chip0516_762674 PBMC +14747 CVVSENDMRF TRAV10*01 TRAJ43*01 CASSMIPDMNTEAFF TRBV19*01 TRBJ1-1*01 HLA-B*08:01 B2M MHCI RPIIRPATL NP InfluenzaA PMID:34811538 tetramer-sort yes amplicon-seq transitional T cells between effector and memory populations healthy healthy_9 chip0516_250405 PBMC +14749 CASSGDGMNTEAFF TRBV10-2*01 TRBJ1-1*01 HLA-A*02:01 B2M MHCI CLGGLLTMV LMP2A EBV PMID:34811538 tetramer-sort yes amplicon-seq effector memory T cells healthy healthy_6 chip0516_179607 PBMC +14750 CAVALSSKSTF TRAV8-3*01 TRAJ27*01 CASSGDGMNTEAFF TRBV10-2*01 TRBJ1-1*01 HLA-A*02:01 B2M MHCI CLGGLLTMV LMP2A EBV PMID:34811538 tetramer-sort yes amplicon-seq effector memory T cells healthy healthy_6 chip0516_3344 PBMC +14754 CALSEANFGNEKLTF TRAV19*01 TRAJ48*01 CASIPRWDRGLNEQFF TRBV19*01 TRBJ2-1*01 HLA-A*02:01 B2M MHCI FLWSVFWLI IGRP HomoSapiens PMID:34811538 tetramer-sort yes amplicon-seq Naive T cells healthy healthy_7 chip0516_94022 PBMC +14755 CASSLMGTGGLSEKLFF TRBV28*01 TRBJ1-4*01 HLA-B*08:01 B2M MHCI QAKWRLQTL EBNA3A EBV PMID:34811538 tetramer-sort yes amplicon-seq transitional T cells between effector and memory populations healthy healthy_8 chip0516_583310 PBMC +14758 CASSASGMRADTQYF TRBV9*01 TRBJ2-3*01 HLA-B*08:01 B2M MHCI HLKRNIVV GFAP HomoSapiens PMID:34811538 tetramer-sort yes amplicon-seq Naive T cells healthy healthy_10 chip0516_405891 PBMC +14760 CAAVFTSGTYKYIF TRAV29/DV5*01 TRAJ40*01 CASRLRDSPYEQYF TRBV6-1*01 TRBJ2-7*01 HLA-A*01:01 B2M MHCI VTDAAHLLI ZNT8 HomoSapiens PMID:34811538 tetramer-sort yes amplicon-seq Naive T cells healthy healthy_8 chip0516_250348 PBMC +14761 CAVYHGGSQGNLIF TRAV12-2*01 TRAJ42*01 CASSLQGDPYGYTF TRBV5-5*01 TRBJ1-2*01 HLA-A*02:01 B2M MHCI LNIDLLWSV IGRP HomoSapiens PMID:34811538 tetramer-sort yes amplicon-seq Naive T cells healthy healthy_6 chip0516_662001 PBMC +14764 CASSIVRGAGELFF TRBV3-1*01 TRBJ2-2*01 HLA-B*08:01 B2M MHCI RAKFKQLL BZLF1 EBV PMID:34811538 tetramer-sort yes amplicon-seq effector memory T cells healthy healthy_9 chip0516_466959 PBMC +14765 CASSLGQAYEQYF TRBV7-8*01 TRBJ2-7*01 HLA-B*08:01 B2M MHCI FLRGRAYGL EBNA3A EBV PMID:34811538 tetramer-sort yes amplicon-seq transitional T cells between effector and memory populations healthy healthy_8 chip0516_404037 PBMC +14770 CASSGDGMNTEAFF TRBV10-2*01 TRBJ1-1*01 HLA-A*02:01 B2M MHCI CLGGLLTMV LMP2A EBV PMID:34811538 tetramer-sort yes amplicon-seq effector memory T cells healthy healthy_6 chip0516_802979 PBMC +14772 CASSGDGMNTEAFF TRBV10-2*01 TRBJ1-1*01 HLA-A*02:01 B2M MHCI CLGGLLTMV LMP2A EBV PMID:34811538 tetramer-sort yes amplicon-seq effector memory T cells healthy healthy_6 chip0516_752010 PBMC +14773 CAVALSSKSTF TRAV8-3*01 TRAJ27*01 CASGGAGVNTEAFS TRBV10-2*01 TRBJ1-1*01 HLA-A*02:01 B2M MHCI CLGGLLTMV LMP2A EBV PMID:34811538 tetramer-sort yes amplicon-seq effector memory T cells healthy healthy_6 chip0516_407810 PBMC +14776 CAVLMDNNYQLIW TRAV12-3*01 TRAJ33*01 HLA-A*02:01 B2M MHCI CLGGLLTMV LMP2A EBV PMID:34811538 tetramer-sort yes amplicon-seq effector memory T cells healthy healthy_6 chip0516_283238 PBMC +14778 CAASKRgc?GSEKLVV TRAV13-1*01 TRAJ57*01 HLA-A*02:01 B2M MHCI LLAGIGTVPI PGT HomoSapiens PMID:34811538 tetramer-sort yes amplicon-seq Naive T cells healthy healthy_7 chip0516_144657 PBMC +14779 CAVTLTLYSGAGSYQLTF TRAV21*01 TRAJ28*01 CASSLMGTGGLSEKLFF TRBV28*01 TRBJ1-4*01 HLA-B*08:01 B2M MHCI QAKWRLQTL EBNA3A EBV PMID:34811538 tetramer-sort yes amplicon-seq effector memory T cells healthy healthy_8 chip0516_882628 PBMC +14780 CASTRGLSSGAGSYPLPF TRAV6*01 TRAJ28*01 CASSLLVGVGNTIYF TRBV28*01 TRBJ1-3*01 HLA-B*08:01 B2M MHCI QAKWRLQTL EBNA3A EBV PMID:34811538 tetramer-sort yes amplicon-seq central memory T cells healthy healthy_9 chip0516_310452 PBMC +14781 CAFRTGNQFYF TRAV24*01 TRAJ49*01 HLA-B*08:01 B2M MHCI YLKDQQLL gp160 HIV-1 PMID:34811538 tetramer-sort yes amplicon-seq Naive T cells healthy healthy_8 chip0516_547832 PBMC +14782 CASSLMGTGGLSEKLFF TRBV28*01 TRBJ1-4*01 HLA-B*08:01 B2M MHCI QAKWRLQTL EBNA3A EBV PMID:34811538 tetramer-sort yes amplicon-seq transitional T cells between effector and memory populations healthy healthy_8 chip0516_543595 PBMC +14783 CAVKTDTNAGKSTF TRAV12-2*01 TRAJ27*01 HLA-B*08:01 B2M MHCI FLRGRAYGL EBNA3A EBV PMID:34811538 tetramer-sort yes amplicon-seq effector T cells healthy healthy_8 chip0516_601809 PBMC +14784 CAVALSSKSTF TRAV8-3*01 TRAJ27*01 HLA-A*02:01 B2M MHCI CLGGLLTMV LMP2A EBV PMID:34811538 tetramer-sort yes amplicon-seq effector memory T cells healthy healthy_6 chip0516_780985 PBMC +14790 CAFVDSNYQLIW TRAV38-1*01 TRAJ33*01 HLA-A*02:01 B2M MHCI LLFNILGGWV NS4B HCV PMID:34811538 tetramer-sort yes amplicon-seq Naive T cells healthy healthy_7 chip0516_23083 PBMC +14792 CSVGTGGTNEKLFF TRBV29-1*01 TRBJ1-4*01 HLA-A*02:01 B2M MHCI GLCTLVAML BLMF1 EBV PMID:34811538 tetramer-sort yes amplicon-seq effector T cells healthy healthy_6 chip0516_386631 PBMC +14794 CASSSGQAYEQYF TRBV7-8*01 TRBJ2-7*01 HLA-B*08:01 B2M MHCI FLRGRAYGL EBNA3A EBV PMID:34811538 tetramer-sort yes amplicon-seq effector T cells healthy healthy_8 chip0516_114449 PBMC +14795 CAVALSSKSTF TRAV8-3*01 TRAJ27*01 CASSGDGMNTEAFF TRBV10-2*01 TRBJ1-1*01 HLA-A*02:01 B2M MHCI CLGGLLTMV LMP2A EBV PMID:34811538 tetramer-sort yes amplicon-seq central memory T cells healthy healthy_6 chip0516_153461 PBMC +14796 CILPLAGGTSYGKLTF TRAV26-2*01 TRAJ52*01 CASSSGQAYEQYF TRBV7-8*01 TRBJ2-7*01 HLA-B*08:01 B2M MHCI FLRGRAYGL EBNA3A EBV PMID:34811538 tetramer-sort yes amplicon-seq effector memory T cells healthy healthy_8 chip0516_495958 PBMC +14800 CAVALSSKSTF TRAV8-3*01 TRAJ27*01 HLA-A*02:01 B2M MHCI CLGGLLTMV LMP2A EBV PMID:34811538 tetramer-sort yes amplicon-seq effector T cells healthy healthy_6 chip0516_307736 PBMC +14803 CPVTDIG??cTHNDMRF TRAV8-2*01,TRAV8-4*01 TRAJ43*01 HLA-A*02:01 B2M MHCI LLAGIGTVPI PGT HomoSapiens PMID:34811538 tetramer-sort yes amplicon-seq Naive T cells healthy healthy_7 chip0516_698664 PBMC +14804 CASSVGGNTEAFF TRBV9*01 TRBJ1-1*01 HLA-B*08:01 B2M MHCI ILKGKFQTA NP InfluenzaA PMID:34811538 tetramer-sort yes amplicon-seq Naive T cells healthy healthy_9 chip0516_7609 PBMC +14805 CAVALSSKSTF TRAV8-3*01 TRAJ27*01 HLA-A*02:01 B2M MHCI CLGGLLTMV LMP2A EBV PMID:34811538 tetramer-sort yes amplicon-seq effector memory T cells healthy healthy_6 chip0516_222861 PBMC +14806 CILPLAGGTSYGKLTF TRAV26-2*01 TRAJ52*01 HLA-B*08:01 B2M MHCI FLRGRAYGL EBNA3A EBV PMID:34811538 tetramer-sort yes amplicon-seq effector T cells healthy healthy_8 chip0516_734457 PBMC +14808 CILPLAGGTRSGQLTF TRAV26-2*01 TRAJ52*01 CASSLGQAYEQYF TRBV7-8*01 TRBJ2-7*01 HLA-B*08:01 B2M MHCI FLRGRAYGL EBNA3A EBV PMID:34811538 tetramer-sort yes amplicon-seq effector memory T cells healthy healthy_8 chip0516_663546 PBMC +14810 CASSSGQGDNEQFF TRBV11-3*01 TRBJ2-1*01 HLA-A*02:01 B2M MHCI GLCTLVAML BLMF1 EBV PMID:34811538 tetramer-sort yes amplicon-seq effector memory T cells healthy healthy_6 chip0516_750236 PBMC +14811 CARSGDGMNSEAVF TRBV10-2*01 TRBJ1-1*01 HLA-A*02:01 B2M MHCI CLGGLLTMV LMP2A EBV PMID:34811538 tetramer-sort yes amplicon-seq effector memory T cells healthy healthy_6 chip0516_795310 PBMC +14813 CASSGDGMNTEAFF TRBV10-2*01 TRBJ1-1*01 HLA-A*02:01 B2M MHCI CLGGLLTMV LMP2A EBV PMID:34811538 tetramer-sort yes amplicon-seq effector memory T cells healthy healthy_6 chip0516_762722 PBMC +14814 CAVLMDSNYQLIW TRAV21*01 TRAJ33*01 CASSGDGMNTEDFF TRBV10-2*01 TRBJ1-1*01 HLA-A*02:01 B2M MHCI CLGGLLTMV LMP2A EBV PMID:34811538 tetramer-sort yes amplicon-seq effector memory T cells healthy healthy_6 chip0516_388044 PBMC +14815 CASGAQGGGYGYTF TRBV6-1*01 TRBJ1-2*01 HLA-A*02:01 B2M MHCI FLYALALLL LMP2 EBV PMID:34811538 tetramer-sort yes amplicon-seq central memory T cells healthy healthy_6 chip0516_218314 PBMC +14819 CASSQQGGNYGYTF TRBV6-1*01 TRBJ1-2*01 HLA-A*02:01 B2M MHCI FLYALALLL LMP2 EBV PMID:34811538 tetramer-sort yes amplicon-seq central memory T cells healthy healthy_6 chip0516_758882 PBMC +14820 CASSLGQAYEQYF TRBV7-8*01 TRBJ2-7*01 HLA-B*08:01 B2M MHCI FLRGRAYGL EBNA3A EBV PMID:34811538 tetramer-sort yes amplicon-seq effector memory T cells healthy healthy_8 chip0516_547709 PBMC +14821 CASSLGQAYEQYF TRBV7-8*01 TRBJ2-7*01 HLA-B*08:01 B2M MHCI FLRGRAYGL EBNA3A EBV PMID:34811538 tetramer-sort yes amplicon-seq central memory T cells healthy healthy_8 chip0516_276007 PBMC +14826 CASSGDGTNTEAFF TRBV10-2*01 TRBJ1-1*01 HLA-A*02:01 B2M MHCI CLGGLLTMV LMP2A EBV PMID:34811538 tetramer-sort yes amplicon-seq effector memory T cells healthy healthy_6 chip0516_479174 PBMC +14837 CAVALSSKSTF TRAV8-3*01 TRAJ27*01 HLA-A*02:01 B2M MHCI CLGGLLTMV LMP2A EBV PMID:34811538 tetramer-sort yes amplicon-seq effector memory T cells healthy healthy_6 chip0516_295145 PBMC +14839 CASSGDGMNTEAFF TRBV10-2*01 TRBJ1-1*01 HLA-A*02:01 B2M MHCI CLGGLLTMV LMP2A EBV PMID:34811538 tetramer-sort yes amplicon-seq effector memory T cells healthy healthy_6 chip0516_643886 PBMC +14842 CVVNTQWag??gtRNYKLTF TRAV10*01 TRAJ53*01 CASRERGPTGELFF TRBV7-3*01 TRBJ2-2*01 HLA-B*08:01 B2M MHCI RAKFKQLL BZLF1 EBV PMID:34811538 tetramer-sort yes amplicon-seq effector T cells healthy healthy_8 chip0516_2129 PBMC +14843 CASKGHVGAAQPQHF TRBV19*01 TRBJ1-5*01 HLA-A*02:01 B2M MHCI YVLDHLIVV BRLF1 EBV PMID:34811538 tetramer-sort yes amplicon-seq effector T cells healthy healthy_6 chip0516_352303 PBMC +14845 CAMRGFHSGYSTLTF TRAV14/DV4*01 TRAJ11*01 HLA-B*08:01 B2M MHCI FLRGRAYGL EBNA3A EBV PMID:34811538 tetramer-sort yes amplicon-seq Naive T cells healthy healthy_9 chip0516_415000 PBMC +14846 CAIGLESSYEQYF TRBV10-3*01 TRBJ2-7*01 HLA-A*02:01 B2M MHCI LLSLFSLWL ZNT8 HomoSapiens PMID:34811538 tetramer-sort yes amplicon-seq Naive T cells healthy healthy_7 chip0516_268072 PBMC +14847 CALPGLAGGGSSDTQYF TRBV30*01 TRBJ2-3*01 HLA-A*02:01 B2M MHCI LLAGIGTVPI PGT HomoSapiens PMID:34811538 tetramer-sort yes amplicon-seq Naive T cells healthy healthy_7 chip0516_750224 PBMC +14852 CASSYQGGSYGYTF TRBV6-5*01 TRBJ1-2*01 HLA-A*02:01 B2M MHCI FLYALALLL LMP2 EBV PMID:34811538 tetramer-sort yes amplicon-seq central memory T cells healthy healthy_7 chip0516_687059 PBMC +14853 CAVSEAca?GTYKYIF TRAV8-4*01 TRAJ40*01 CASSDDGMNTEAFF TRBV10-2*01 TRBJ1-1*01 HLA-A*02:01 B2M MHCI CLGGLLTMV LMP2A EBV PMID:34811538 tetramer-sort yes amplicon-seq effector T cells healthy healthy_7 chip0516_856441 PBMC +14855 CASSQTSgg?DIEETQRF TRBV4-3*01 TRBJ2-5*01 HLA-A*02:01 B2M MHCI ALAGIGILTV MART1 HomoSapiens PMID:34811538 tetramer-sort yes amplicon-seq Naive T cells healthy healthy_7 chip0516_135343 PBMC +14857 CASSSSRLFGQFF TRBV27*01 TRBJ2-1*01 HLA-B*08:01 B2M MHCI YVMVTAAL G6PC2 HomoSapiens PMID:34811538 tetramer-sort yes amplicon-seq transitional T cells between effector and memory populations healthy healthy_9 chip0516_195847 PBMC +14859 CALSGYPQGAQKLVF TRAV19*01 TRAJ54*01 CASSTGVGNQPQHF TRBV7-2*01 TRBJ1-5*01 HLA-B*08:01 B2M MHCI MAALPRLIAF GAD2 HomoSapiens PMID:34811538 tetramer-sort yes amplicon-seq transitional T cells between effector and memory populations healthy healthy_9 chip0516_256016 PBMC +14862 CSQGPSGGADGLTL TRAV12-2*01 TRAJ45*01 CASSGDGMNTEAFF TRBV10-2*01 TRBJ1-1*01 HLA-A*02:01 B2M MHCI CLGGLLTMV LMP2A EBV PMID:34811538 tetramer-sort yes amplicon-seq effector memory T cells healthy healthy_6 chip0516_190528 PBMC +14863 CASSQDSLAVSTDTQYF TRBV14*01 TRBJ2-3*01 HLA-A*02:01 B2M MHCI LLAGIGTVPI PGT HomoSapiens PMID:34811538 tetramer-sort yes amplicon-seq Naive T cells healthy healthy_6 chip0516_195352 PBMC +14864 CASSYTAQPDTSNQPQHF TRBV6-2*01,TRBV6-3*01 TRBJ1-5*01 HLA-A*02:01 B2M MHCI GILGFVFTL M1 InfluenzaA PMID:34811538 tetramer-sort yes amplicon-seq transitional T cells between effector and memory populations healthy healthy_6 chip0516_203937 PBMC +14865 CASSGDGMNTGAFF TRBV10-2*01 TRBJ1-1*01 HLA-A*02:01 B2M MHCI CLGGLLTMV LMP2A EBV PMID:34811538 tetramer-sort yes amplicon-seq effector memory T cells healthy healthy_6 chip0516_155278 PBMC +14867 CAMSGGQAGTALIF TRAV12-3*01 TRAJ15*01 HLA-A*02:01 B2M MHCI YLLEMLWRL LMP1 EBV PMID:34811538 tetramer-sort yes amplicon-seq Naive T cells healthy healthy_6 chip0516_638516 PBMC +14868 CILPLAGGTSYGKLTF TRAV26-2*01 TRAJ52*01 CASSLGQAYEQYF TRBV7-8*01 TRBJ2-7*01 HLA-B*08:01 B2M MHCI FLRGRAYGL EBNA3A EBV PMID:34811538 tetramer-sort yes amplicon-seq effector memory T cells healthy healthy_8 chip0516_422640 PBMC +14869 CILPLAGGTSYGKLTF TRAV26-2*01 TRAJ52*01 HLA-B*08:01 B2M MHCI FLRGRAYGL EBNA3A EBV PMID:34811538 tetramer-sort yes amplicon-seq effector T cells healthy healthy_8 chip0516_493408 PBMC +14871 CASSPPYNEQFF TRBV7-8*01 TRBJ2-1*01 HLA-A*02:01 B2M MHCI LLSLFSLWL ZNT8 HomoSapiens PMID:34811538 tetramer-sort yes amplicon-seq transitional T cells between effector and memory populations healthy healthy_6 chip0516_763746 PBMC +14876 CAVKAPYSSASKIIF TRAV12-2*01 TRAJ3*01 HLA-B*08:01 B2M MHCI MALWMRLL INS HomoSapiens PMID:34811538 tetramer-sort yes amplicon-seq effector T cells healthy healthy_8 chip0516_343301 PBMC +14877 CILPLAGGTSYGKLTF TRAV26-2*01 TRAJ52*01 HLA-B*08:01 B2M MHCI FLRGRAYGL EBNA3A EBV PMID:34811538 tetramer-sort yes amplicon-seq effector T cells healthy healthy_8 chip0516_755248 PBMC +14879 CAMRtg??ccRLMF TRAV14/DV4*01 TRAJ31*01 HLA-B*08:01 B2M MHCI FLRGRAYGL EBNA3A EBV PMID:34811538 tetramer-sort yes amplicon-seq effector memory T cells healthy healthy_8 chip0516_755079 PBMC +14885 CASSLGQAYEQYF TRBV7-8*01 TRBJ2-7*01 HLA-B*08:01 B2M MHCI FLRGRAYGL EBNA3A EBV PMID:34811538 tetramer-sort yes amplicon-seq effector T cells healthy healthy_8 chip0516_539013 PBMC +14886 CASSGDGMNTEAFF TRBV10-2*01 TRBJ1-1*01 HLA-A*02:01 B2M MHCI CLGGLLTMV LMP2A EBV PMID:34811538 tetramer-sort yes amplicon-seq effector memory T cells healthy healthy_6 chip0516_184733 PBMC +14887 CVVSGVPKNNDMRF TRAV10*01 TRAJ43*01 HLA-B*08:01 B2M MHCI RMMEYGTTM GAD2 HomoSapiens PMID:34811538 tetramer-sort yes amplicon-seq Naive T cells healthy healthy_8 chip0516_278658 PBMC +14888 CAMKDcg??gtNQFYS TRAV12-3*01 TRAJ49*01 CASSLALQGTSNEQFF TRBV7-2*01 TRBJ2-1*01 HLA-B*08:01 B2M MHCI NLIFKWIL G6PC2 HomoSapiens PMID:34811538 tetramer-sort yes amplicon-seq Naive T cells healthy healthy_8 chip0516_881532 PBMC +14890 CAISESMDGNEQFF TRBV10-3*01 TRBJ2-1*01 HLA-A*01:01 B2M MHCI CTELKLSDY NP InfluenzaA PMID:34811538 tetramer-sort yes amplicon-seq effector T cells healthy healthy_10 chip0516_132589 PBMC +14891 CAISEPLLGGKTNTGELFF TRBV10-3*01 TRBJ2-2*01 HLA-A*02:01 B2M MHCI TLLANVTAV VP6 RotavirusA PMID:34811538 tetramer-sort yes amplicon-seq transitional T cells between effector and memory populations healthy healthy_6 chip0516_565249 PBMC +14893 CSAGGLAGGLDEQFF TRBV20-1*01 TRBJ2-1*01 HLA-A*02:01 B2M MHCI LLAGIGTVPI PGT HomoSapiens PMID:34811538 tetramer-sort yes amplicon-seq Naive T cells healthy healthy_6 chip0516_506982 PBMC +14896 CILPLAGGTSYGKLTF TRAV26-2*01 TRAJ52*01 CASSLGQAYEQYF TRBV7-8*01 TRBJ2-7*01 HLA-B*08:01 B2M MHCI FLRGRAYGL EBNA3A EBV PMID:34811538 tetramer-sort yes amplicon-seq effector memory T cells healthy healthy_8 chip0516_170903 PBMC +14897 CASSLMGTGGLSEKLSF TRBV28*01 TRBJ1-4*01 HLA-B*08:01 B2M MHCI QAKWRLQTL EBNA3A EBV PMID:34811538 tetramer-sort yes amplicon-seq effector memory T cells healthy healthy_8 chip0516_782103 PBMC +14900 CSVGTGGTNEKLFF TRBV29-1*01 TRBJ1-4*01 HLA-A*02:01 B2M MHCI GLCTLVAML BLMF1 EBV PMID:34811538 tetramer-sort yes amplicon-seq transitional T cells between effector and memory populations healthy healthy_6 chip0516_186493 PBMC +14902 CASSLARGDGYTF TRBV7-2*01 TRBJ1-2*01 HLA-A*02:01 B2M MHCI LLAGIGTVPI PGT HomoSapiens PMID:34811538 tetramer-sort yes amplicon-seq Naive T cells healthy healthy_7 chip0516_250423 PBMC +14903 CAVKGDTNAGKSTF TRAV12-2*01 TRAJ27*01 HLA-B*08:01 B2M MHCI FLRGRAYGL EBNA3A EBV PMID:34811538 tetramer-sort yes amplicon-seq transitional T cells between effector and memory populations healthy healthy_8 chip0516_437639 PBMC +14905 CADRTSTg?gVNRKLTF TRAV35*01 TRAJ56*01 HLA-A*02:01 B2M MHCI LLPPLLEHL PTPRN HomoSapiens PMID:34811538 tetramer-sort yes amplicon-seq Naive T cells healthy healthy_7 chip0516_356805 PBMC +14909 CILRYNAGNMLTF TRAV26-2*01 TRAJ39*01 HLA-B*08:01 B2M MHCI RPIIRPATL NP InfluenzaA PMID:34811538 tetramer-sort yes amplicon-seq Naive T cells healthy healthy_9 chip0516_662273 PBMC +14910 LCRPGIY??tGVCVAFF TRBV6-1*01 TRBJ1-1*01 HLA-A*02:01 B2M MHCI VMNILLQYV GAD65 HomoSapiens PMID:34811538 tetramer-sort yes amplicon-seq transitional T cells between effector and memory populations healthy healthy_6 chip0516_359225 PBMC +14911 CAVPYLGDSNYQLIW TRAV1-2*01 TRAJ33*01 HLA-A*02:01 B2M MHCI LLAGIGTVPI PGT HomoSapiens PMID:34811538 tetramer-sort yes amplicon-seq Naive T cells healthy healthy_6 chip0516_172013 PBMC +14913 CAVLMDSNYQLIW TRAV12-3*01 TRAJ33*01 CASSGDGMNTEAFF TRBV10-2*01 TRBJ1-1*01 HLA-A*02:01 B2M MHCI CLGGLLTMV LMP2A EBV PMID:34811538 tetramer-sort yes amplicon-seq effector T cells healthy healthy_6 chip0516_840459 PBMC +14915 CASSQVRYGTDTQYF TRBV3-1*01 TRBJ2-3*01 HLA-A*01:01 B2M MHCI HSNLNDATY NP InfluenzaA PMID:34811538 tetramer-sort yes amplicon-seq Naive T cells healthy healthy_9 chip0516_697537 PBMC +14917 CILPLAGGTSYGKLTF TRAV26-2*01 TRAJ52*01 HLA-B*08:01 B2M MHCI FLRGRAYGL EBNA3A EBV PMID:34811538 tetramer-sort yes amplicon-seq effector T cells healthy healthy_8 chip0516_278726 PBMC +14918 CASSLTSGNYNEQFF TRBV5-1*01 TRBJ2-1*01 HLA-B*08:01 B2M MHCI YLKDQQLL gp160 HIV-1 PMID:34811538 tetramer-sort yes amplicon-seq central memory T cells healthy healthy_10 chip0516_884142 PBMC +14926 CAVSERA??aYGNKLVF TRAV8-4*01 TRAJ47*01 HLA-B*08:01 B2M MHCI RAKFKQLL BZLF1 EBV PMID:34811538 tetramer-sort yes amplicon-seq transitional T cells between effector and memory populations healthy healthy_8 chip0516_455584 PBMC +14931 CASSGDGMNTEAFF TRBV10-2*01 TRBJ1-1*01 HLA-A*02:01 B2M MHCI CLGGLLTMV LMP2A EBV PMID:34811538 tetramer-sort yes amplicon-seq effector T cells healthy healthy_6 chip0516_717608 PBMC +14934 CAVALSSKSTF TRAV8-3*01 TRAJ27*01 CASSGDGMNTEAFF TRBV10-2*01 TRBJ1-1*01 HLA-A*02:01 B2M MHCI CLGGLLTMV LMP2A EBV PMID:34811538 tetramer-sort yes amplicon-seq effector T cells healthy healthy_6 chip0516_110135 PBMC +14937 CAMSLSNFGNEKLTF TRAV12-3*01 TRAJ48*01 HLA-A*02:01 B2M MHCI LLAGIGTVPI PGT HomoSapiens PMID:34811538 tetramer-sort yes amplicon-seq Naive T cells healthy healthy_6 chip0516_715945 PBMC +14938 CALDTGRSALTF TRAV12-2*01 TRAJ5*01 HLA-A*02:01 B2M MHCI LLAGIGTVPI PGT HomoSapiens PMID:34811538 tetramer-sort yes amplicon-seq Naive T cells healthy healthy_6 chip0516_232807 PBMC +14940 CSVRGTDVGWTEAFF TRBV29-1*01 TRBJ1-1*01 HLA-B*08:01 B2M MHCI YAKWKLCSA ZNT8 HomoSapiens PMID:34811538 tetramer-sort yes amplicon-seq Naive T cells healthy healthy_8 chip0516_131969 PBMC +14942 CILPLAGGTSYGKLTF TRAV26-2*01 TRAJ52*01 CASSLGQAYEQYF TRBV7-8*01 TRBJ2-7*01 HLA-B*08:01 B2M MHCI FLRGRAYGL EBNA3A EBV PMID:34811538 tetramer-sort yes amplicon-seq effector T cells healthy healthy_8 chip0516_506176 PBMC +14943 CASSTQTAPDDTQYF TRBV7-9*01 TRBJ2-3*01 HLA-B*08:01 B2M MHCI RAKFKQLL BZLF1 EBV PMID:34811538 tetramer-sort yes amplicon-seq effector memory T cells healthy healthy_8 chip0516_92022 PBMC +14944 CAVKGDTNAGKSTF TRAV12-2*01 TRAJ27*01 HLA-B*08:01 B2M MHCI FLRGRAYGL EBNA3A EBV PMID:34811538 tetramer-sort yes amplicon-seq effector T cells healthy healthy_8 chip0516_442359 PBMC +14946 CALSAFTTGTASKLTF TRAV19*01 TRAJ44*01 HLA-A*01:01 B2M MHCI LTSLTILQLY G6PC2 HomoSapiens PMID:34811538 tetramer-sort yes amplicon-seq Naive T cells healthy healthy_8 chip0516_442820 PBMC +14949 CILPLAGGTSYGKLTF TRAV26-2*01 TRAJ52*01 HLA-B*08:01 B2M MHCI FLRGRAYGL EBNA3A EBV PMID:34811538 tetramer-sort yes amplicon-seq effector T cells healthy healthy_8 chip0516_761395 PBMC +14950 CATEGDSGYSTLTF TRAV17*01 TRAJ11*01 HLA-A*02:01 B2M MHCI FLYALALLL LMP2 EBV PMID:34811538 tetramer-sort yes amplicon-seq effector T cells healthy healthy_6 chip0516_77226 PBMC