codecheck.yml

---
version: https://codecheck.org.uk/spec/config/1.0

paper:
  title: >
    [Re] Connectivity reflects coding: a model of voltage-based STDP with homeostasis
  authors:
    - name: Rene Larisch
      ORCID: 0000-0003-3544-0631
  reference: >
    ReScience C (2019) 5, 3, 2
    http://rescience.github.io/bibliography/Larisch_2019.html

manifest:
  - file: codecheck/figures/Fig1_clamp.png
    comment: manuscript Figure 1 Left
  - file: codecheck/figures/Fig1_window.png
    comment: manuscript Figure 1 Middle
  - file: codecheck/figures/Fig1_pairing.png
    comment: manuscript Figure 1 Right
  - file: codecheck/figures/Fig2_burst.png
    comment: manuscript Figure 2
  - file: codecheck/figures/Fig3_rateCode.png
    comment: manuscript Figure 3a
  - file: codecheck/figures/Fig3_rateCode_standardSTDP.png
    comment: manuscript Figure 3b
  - file: codecheck/figures/Fig3_temporalCode.png
    comment: manuscript Figure 3c
  - file: codecheck/figures/Fig3_temporalCode_standardSTDP.png
    comment: manuscript Figure 3d
  - file: codecheck/figures/Fig4_stable.png
    comment: manuscript Figure 4a
  - file: codecheck/figures/Fig4_RF.png
    comment: manuscript Figure 4b
  - file: codecheck/figures/Fig4_RF_1.png
    comment: manuscript Figure 4b with alternative seed


codechecker:
  - name: Iain Davies
    ORCID: 0000-0002-5361-6285

summary: >
  This code had some difficulties involving the Python package ANNarchy. All scripts were eventually able to be run, and most figures were reproduced as in the ReScience paper. However two figures were very different from the originals.
  Some figures also varied considerably when changing the seed. 
repository: https://github.com/codecheckers/Larisch-reproduction
check_time: "2020-07-23 10:00:00"
certificate: 2020-005
report: https://doi.org/10.5281/zenodo.3959175