Release builds for v1.17.8 both OSX

[amcpherson]

Neither of the provided builds work on linux, both work on osx.

[jblachly]

I am also having to compile from source because there is no linux build for latest version

[amcpherson]

I have added clonehd to my anaconda.org channel (dranew) if anyone reading
this wishes to install from binaries using conda.

On Thu, Apr 14, 2016 at 10:46 AM jblachly [email protected] wrote:

I am also having to compile from source because there is no linux build
for latest version

—
You are receiving this because you authored the thread.
Reply to this email directly or view it on GitHub
#8 (comment)

[ivazquez]

Thanks for pointing this out. I tagged a new release in my fork (v1.17.9), which includes Linux and OSX binaries and removes hard-coded links from the Makefile. This should close issues #8 and #9.

If you are running OSX and you use Homebrew, keep an eye out for this pull request on https://github.com/Homebrew/homebrew-science/pull/3563 which should be available soon.

[sbamin]

I downloaded pre-compiled linux binaries from v1.17.9 but it threw an error for all of three binaries.

./cloneHD: /lib64/libc.so.6: version `GLIBC_2.14' not found (required by ./cloneHD)

So, I built it on our HPC login node as follows:

wget https://github.com/ivazquez/cloneHD/archive/v1.17.9.tar.gz
tar xvzf v1.17.9.tar.gz
cd cloneHD-1.17.9
mkdir -p build
cd src
make
echo $?

cd ../build
./cloneHD --help

If there is an error while executing cloneHD,

./cloneHD: error while loading shared libraries: libgsl.so.19: cannot open shared object file: No such file or directory

First, locate libgsl.so by

gsl-config --libs

and confirm that libgsl.so.19 is in LD_LIBRARY_PATH.

For me, I was using anaconda supplied libgsl and since anaconda lib path is typically not set in LD_LIBRARY_PATH, it threw an error. I got it running again after appending anaconda lib path to LD_LIBRARY_PATH though it is not a best practice as per anaconda setup!

export LD_LIBRARY_PATH="${LD_LIBRARY_PATH}:/labshared/libs/anaconda/v4.2.0/lib"
./cloneHD --help

For all command line options, see ./docs/README-cloneHD.md

:-)