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provide description of baf.subclone-1.txt file #11

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amcpherson opened this issue Apr 2, 2015 · 0 comments
Open

provide description of baf.subclone-1.txt file #11

amcpherson opened this issue Apr 2, 2015 · 0 comments

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@amcpherson
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A description of the baf.subclone-1.txt files would be helpful. I assume they are similar to cna.subclone-2.txt, with the caveat that it is showing the uncertainty in which allele has x copies as a 50/50 weighting on the two copies.

#chr first-locus nloci last-locus 0 1 2 3 4
20  61098  56814 62962891 0.500 0.500 0.000 0.000 0.000
21 9427957  29809 48102613 0.500 0.500 0.000 0.000 0.000
22 16052239  31219 51229855 0.500 0.500 0.000 0.000 0.000
1  52238  13224 15436352 0.500 0.000 0.500 0.000 0.000
1 15454068     19 15463776 0.500 0.000 0.500 0.000 0.000
1 15467250     50 15506001 0.500 0.000 0.500 0.000 0.000
1 15512968     30 15536491 0.500 0.000 0.500 0.000 0.000
1 15539582     56 15560827 0.500 0.000 0.500 0.000 0.000
1 15562922      3 15564121 0.500 0.000 0.500 0.000 0.000
@amcpherson amcpherson changed the title Interpretation of baf.subclone-1.txt baf.subclone-1.txt with strange results Apr 2, 2015
@amcpherson amcpherson changed the title baf.subclone-1.txt with strange results provide description of baf.subclone-1.txt file Apr 2, 2015
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