NAMESPACE

# Generated by roxygen2: do not edit by hand

S3method(lognormalize_and_pca,Seurat)
S3method(lognormalize_and_pca,list)
S3method(qc_filter_seurat_object,Seurat)
S3method(qc_filter_seurat_object,list)
export(add_umap_embedding)
export(cluster_analysis)
export(compute_module_score)
export(create_seurat_object)
export(dim_plot)
export(dim_plot_tailored)
export(dimred_qc_plots)
export(dot_plot)
export(feature_plot)
export(feature_plot_tailored)
export(find_all_markers)
export(find_clusters)
export(find_neighbors)
export(harmony_analysis)
export(heatmap_plot)
export(install_scrublet)
export(lognormalize_and_pca)
export(module_score_analysis)
export(pca_feature_cor_plot)
export(qc_filter_seurat_object)
export(run_cluster_pipeline)
export(run_harmony)
export(run_harmony_pipeline)
export(run_qc_pipeline)
export(run_spatial_qc_pipeline)
export(run_umap)
export(scatter_meta_plot)
export(spatial_create_seurat_object)
export(spatial_dim_plot)
export(spatial_feature_plot)
export(subset_dim_plot)
export(subset_feature_plot)
import(BiocStyle)
import(ggplot2)
importFrom(grDevices,colorRampPalette)
importFrom(grDevices,dev.list)
importFrom(grDevices,dev.off)
importFrom(grDevices,pdf)
importFrom(grDevices,png)
importFrom(rlang, "%||%")
importFrom(rlang,fn_fmls)
importFrom(stats,filter)
importFrom(stats,median)
importFrom(utils,combn)
importFrom(utils,head)
importFrom(utils,read.csv)
importFrom(utils,write.csv)