From 941f9e7116105e2dabb286d3e6ef0aabdfa3c228 Mon Sep 17 00:00:00 2001 From: stefvanbuuren Date: Mon, 20 Nov 2023 17:51:29 +0000 Subject: [PATCH] =?UTF-8?q?Deploying=20to=20gh-pages=20from=20@=20amices/m?= =?UTF-8?q?ice@3abe3934985113a58f56a18665a4c90ca8772eee=20=F0=9F=9A=80?= MIME-Version: 1.0 Content-Type: text/plain; charset=UTF-8 Content-Transfer-Encoding: 8bit --- articles/oldfriends.html | 2 +- articles/overview.html | 2 +- pkgdown.yml | 2 +- reference/fix.coef.html | 8 +++---- reference/glm.mids.html | 4 ++-- reference/lm.mids.html | 2 +- reference/make.formulas.html | 18 ++++++++-------- reference/mice.impute.2l.pan.html | 31 ++------------------------- reference/mice.impute.midastouch.html | 6 +++--- reference/mice.impute.rf.html | 4 ++-- reference/version.html | 2 +- search.json | 2 +- 12 files changed, 28 insertions(+), 55 deletions(-) diff --git a/articles/oldfriends.html b/articles/oldfriends.html index fefedeb0d..d051b60b6 100644 --- a/articles/oldfriends.html +++ b/articles/oldfriends.html @@ -81,7 +81,7 @@

Help for old friends

-

2023-10-06

+

2023-11-20

Source: vignettes/oldfriends.Rmd
oldfriends.Rmd
diff --git a/articles/overview.html b/articles/overview.html index f0dee302f..8c3e308d1 100644 --- a/articles/overview.html +++ b/articles/overview.html @@ -81,7 +81,7 @@

Overview

-

2023-10-06

+

2023-11-20

Source: vignettes/overview.Rmd
overview.Rmd
diff --git a/pkgdown.yml b/pkgdown.yml index 64de255ff..bf901f626 100644 --- a/pkgdown.yml +++ b/pkgdown.yml @@ -4,7 +4,7 @@ pkgdown_sha: ~ articles: oldfriends: oldfriends.html overview: overview.html -last_built: 2023-10-06T08:21Z +last_built: 2023-11-20T17:50Z urls: reference: https://amices.org/mice/reference article: https://amices.org/mice/articles diff --git a/reference/fix.coef.html b/reference/fix.coef.html index 5214c8d65..61fb9efb5 100644 --- a/reference/fix.coef.html +++ b/reference/fix.coef.html @@ -99,7 +99,7 @@

Examples
model0 <- lm(Volume ~ Girth + Height, data = trees)
 formula(model0)
 #> Volume ~ Girth + Height
-#> <environment: 0x55cab77b0580>
+#> <environment: 0x55c16ba354f0>
 coef(model0)
 #> (Intercept)       Girth      Height 
 #> -57.9876589   4.7081605   0.3392512 
@@ -110,10 +110,10 @@ 
Examplesmodel1 <- fix.coef(model0)
 formula(model1)
 #> Volume ~ 1
-#> <environment: 0x55cab77b0580>
+#> <environment: 0x55c16ba354f0>
 coef(model1)
-#>  (Intercept) 
-#> 1.125519e-14 
+#> (Intercept) 
+#> 1.17136e-14 
 deviance(model1)
 #> [1] 421.9214
 
diff --git a/reference/glm.mids.html b/reference/glm.mids.html
index 1d4c64f52..2094388b8 100644
--- a/reference/glm.mids.html
+++ b/reference/glm.mids.html
@@ -192,11 +192,11 @@ 
Examples#> 
 #> Coefficients:
 #> (Intercept)          bmi          chl  
-#>    -8.29196      0.10502      0.01992  
+#>    -7.92351      0.08376      0.02085  
 #> 
 #> Degrees of Freedom: 24 Total (i.e. Null);  22 Residual
 #> Null Deviance:	    25.02 
-#> Residual Deviance: 21.99 	AIC: 27.99
+#> Residual Deviance: 22.3 	AIC: 28.3
 #> 
 #> [[4]]
 #> 
diff --git a/reference/lm.mids.html b/reference/lm.mids.html
index 60540ffc9..a71df2e71 100644
--- a/reference/lm.mids.html
+++ b/reference/lm.mids.html
@@ -168,7 +168,7 @@ 
Examples#> 
 #> Coefficients:
 #> (Intercept)          hyp          chl  
-#>     21.1645      -2.1283       0.0436  
+#>    22.39103     -2.07716      0.03741  
 #> 
 #> 
 #> [[3]]
diff --git a/reference/make.formulas.html b/reference/make.formulas.html
index 7cfcc27af..1ef766d6a 100644
--- a/reference/make.formulas.html
+++ b/reference/make.formulas.html
@@ -102,25 +102,25 @@ 
Examplesf1
 #> $age
 #> age ~ bmi + hyp + chl
-#> <environment: 0x55cabc6032e8>
+#> <environment: 0x55c165238558>
 #> 
 #> $bmi
 #> bmi ~ age + hyp + chl
-#> <environment: 0x55cabc6032e8>
+#> <environment: 0x55c165238558>
 #> 
 #> $hyp
 #> hyp ~ age + bmi + chl
-#> <environment: 0x55cabc6032e8>
+#> <environment: 0x55c165238558>
 #> 
 #> $chl
 #> chl ~ age + bmi + hyp
-#> <environment: 0x55cabc6032e8>
+#> <environment: 0x55c165238558>
 #> 
 f2 <- make.formulas(nhanes, blocks = make.blocks(nhanes, "collect"))
 f2
 #> $collect
 #> age + bmi + hyp + chl ~ 0
-#> <environment: 0x55cabc0e6c38>
+#> <environment: 0x55c16de4b9a0>
 #> 
 
 # for editing, it may be easier to work with the character vector
@@ -134,19 +134,19 @@ 
Examplesf3
 #> $age
 #> age ~ bmi + hyp + chl
-#> <environment: 0x55cabba9e758>
+#> <environment: 0x55c16fc6a598>
 #> 
 #> $bmi
 #> bmi ~ age + hyp + chl
-#> <environment: 0x55cabba9e758>
+#> <environment: 0x55c16fc6a598>
 #> 
 #> $hyp
 #> hyp ~ age + bmi + chl
-#> <environment: 0x55cabba9e758>
+#> <environment: 0x55c16fc6a598>
 #> 
 #> $chl
 #> chl ~ age + bmi + hyp
-#> <environment: 0x55cabba9e758>
+#> <environment: 0x55c16fc6a598>
 #>

diff --git a/reference/mice.impute.2l.pan.html b/reference/mice.impute.2l.pan.html index 7a0e8f951..6d9ebcc0d 100644 --- a/reference/mice.impute.2l.pan.html +++ b/reference/mice.impute.2l.pan.html @@ -223,36 +223,9 @@

Examples#> #> expand, pack, unpack mod <- lmer(y ~ (1 + x | group) + x, data = complete(imp1)) -#> boundary (singular) fit: see help('isSingular') +#> Error in initializePtr(): function 'cholmod_factor_ldetA' not provided by package 'Matrix' summary(mod) -#> Linear mixed model fit by REML ['lmerMod'] -#> Formula: y ~ (1 + x | group) + x -#> Data: complete(imp1) -#> -#> REML criterion at convergence: 13126.5 -#> -#> Scaled residuals: -#> Min 1Q Median 3Q Max -#> -3.4498 -0.6620 -0.0145 0.6770 3.8518 -#> -#> Random effects: -#> Groups Name Variance Std.Dev. Corr -#> group (Intercept) 0.3460116 0.5882 -#> x 0.0001001 0.0100 -1.00 -#> Residual 0.7169052 0.8467 -#> Number of obs: 5000, groups: group, 250 -#> -#> Fixed effects: -#> Estimate Std. Error t value -#> (Intercept) 0.03455 0.03908 0.884 -#> x 0.29829 0.01247 23.922 -#> -#> Correlation of Fixed Effects: -#> (Intr) -#> x -0.045 -#> optimizer (nloptwrap) convergence code: 0 (OK) -#> boundary (singular) fit: see help('isSingular') -#> +#> Error in h(simpleError(msg, call)): error in evaluating the argument 'object' in selecting a method for function 'summary': object 'mod' not found # Examples of predictorMatrix specification diff --git a/reference/mice.impute.midastouch.html b/reference/mice.impute.midastouch.html index d05b3d99d..bb02e99b8 100644 --- a/reference/mice.impute.midastouch.html +++ b/reference/mice.impute.midastouch.html @@ -259,14 +259,14 @@

Examples# list the actual imputations for BMI imp$imp$bmi #> 1 2 3 4 5 -#> 1 30.1 22.5 22.5 22.5 26.3 -#> 3 30.1 29.6 30.1 29.6 22.0 +#> 1 30.1 35.3 22.5 22.5 26.3 +#> 3 30.1 30.1 30.1 29.6 22.0 #> 4 21.7 27.2 21.7 20.4 25.5 #> 6 21.7 27.4 25.5 25.5 25.5 #> 10 27.2 22.7 22.7 24.9 27.4 #> 11 30.1 29.6 30.1 22.5 22.0 #> 12 35.3 26.3 25.5 24.9 27.4 -#> 16 30.1 22.5 30.1 22.5 22.0 +#> 16 30.1 29.6 30.1 22.5 22.0 #> 21 30.1 22.5 30.1 22.5 22.0 # first completed data matrix diff --git a/reference/mice.impute.rf.html b/reference/mice.impute.rf.html index 2234837ba..cb3de214c 100644 --- a/reference/mice.impute.rf.html +++ b/reference/mice.impute.rf.html @@ -106,7 +106,7 @@

ArgumentsrandomForest::randomForest(), -randomForest:::randomForest.default(), and ranger::ranger().

+randomForest:::randomForest.default(), and ranger::ranger().

@@ -155,7 +155,7 @@

ReferencesSee also

mice, mice.impute.cart, randomForest -ranger

+ranger

Other univariate imputation functions: mice.impute.cart(), mice.impute.lasso.logreg(), diff --git a/reference/version.html b/reference/version.html index 68fc081a8..4b28d4960 100644 --- a/reference/version.html +++ b/reference/version.html @@ -84,7 +84,7 @@

Examples
version()
 #> [1] "mice 3.16.8 2023-10-03 /home/runner/work/_temp/Library"
 version("base")
-#> [1] "base 4.3.1  /opt/R/4.3.1/lib/R/library"
+#> [1] "base 4.3.2  /opt/R/4.3.2/lib/R/library"