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Consider adding kgcl bindings #180

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cmungall opened this issue Jul 6, 2022 · 0 comments
Open

Consider adding kgcl bindings #180

cmungall opened this issue Jul 6, 2022 · 0 comments

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@cmungall
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cmungall commented Jul 6, 2022 •
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KGCL is a proposed standard for representing changes to ontologies. See:

https://github.com/INCATools/kgcl

There are currently bindings for this and rdflib:

https://github.com/INCATools/kgcl-rdflib

It would be great to have pronto bindings - meaning people could just send a KGCL file to an obo file and have it update

Understandable if you don't want the dependency in this repo; it brings in rdflib and others...

options:

  1. kgcl bindings live in this repo
  2. there is a separate kgcl-pronto lib, analogous to the rdflib one
  3. the bindings like in OAK, which acts as a big uber wrapper

I am going with 3 for now but happy to have them anywhere
cmungall added a commit to INCATools/ontology-access-kit that referenced this issue Jul 6, 2022
@cmungall
Adding some preliminary KGCL bindings.
39a7a09 
These may move to another package - see althonos/pronto#180
@cmungall cmungall mentioned this issue Jul 6, 2022
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cmungall added a commit to INCATools/ontology-access-kit that referenced this issue Jul 7, 2022
@cmungall
Adding KGCL support via kgcl-rdflib (#164)
3420110 
* Adding bindings for kgcl-rdflib

* recognizing ofn suffix and rdflib prefix

* Adding some preliminary KGCL bindings.
These may move to another package - see althonos/pronto#180

* fixing signature

* adding skos definition

* Adding an apply command for applying KGCL patches
Adding a KGCL diff
Rationalizing other commands

* kgcl

* diffs

* lint

* poetry update

* plac8 flake8

* plac8 flake8

* plac8 flake8
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@cmungall