#utils #Python utilities from a computational biologist A repository of code that I hope will be generally useful to data scientists. All comments, suggestions and pull requests are welcome!
I work almost entirely in an interactive IPython --pylab environment. Although I have tried to make all imports explicit in this code, it may be dependent on imports made by the --pylab option (similar to %pylab magic):
import numpy
import matplotlib
from matplotlib import pylab, mlab, pyplot
np = numpy
plt = pyplot
from IPython.display import display
from IPython.core.pylabtools import figsize, getfigs
from pylab import *
from numpy import *In addition I may assume the following imports (but again, I try not to):
from __future__ import division
import pandas as pd
from scipy import stats##License
All source code in this repository is freely available under an MIT license, unless otherwise noted within a file.
The MIT License (MIT)
Copyright (c) 2014 Andrew Gartland
Permission is hereby granted, free of charge, to any person obtaining a copy of this software and associated documentation files (the "Software"), to deal in the Software without restriction, including without limitation the rights to use, copy, modify, merge, publish, distribute, sublicense, and/or sell copies of the Software, and to permit persons to whom the Software is furnished to do so, subject to the following conditions:
The above copyright notice and this permission notice shall be included in all copies or substantial portions of the Software.
THE SOFTWARE IS PROVIDED "AS IS", WITHOUT WARRANTY OF ANY KIND, EXPRESS OR IMPLIED, INCLUDING BUT NOT LIMITED TO THE WARRANTIES OF MERCHANTABILITY, FITNESS FOR A PARTICULAR PURPOSE AND NONINFRINGEMENT. IN NO EVENT SHALL THE AUTHORS OR COPYRIGHT HOLDERS BE LIABLE FOR ANY CLAIM, DAMAGES OR OTHER LIABILITY, WHETHER IN AN ACTION OF CONTRACT, TORT OR OTHERWISE, ARISING FROM, OUT OF OR IN CONNECTION WITH THE SOFTWARE OR THE USE OR OTHER DEALINGS IN THE SOFTWARE.