diff --git a/src/pyscenic/regions.py b/src/pyscenic/regions.py index 63aa9fd..7ea0967 100644 --- a/src/pyscenic/regions.py +++ b/src/pyscenic/regions.py @@ -42,8 +42,10 @@ class RegionRankingDatabase(InvertedRankingDatabase): # signature). Potential mitigation challenges are: # - Recoding the decompression of the inverted design using C++ and its standard template library. Impact will only # be a constant factor while personal investment will be substantial. - # - Break the clean interface between database storage and AUC and recovery curve calculation. The exact order of - # the genes is not really required for AUC calculation so decompression times could be significantly reduced. + # - Break the clean interface between database storage and AUC and recovery curve calculation. The name of the + # genes that are at the top of a feature ranking is not necessary to calculate the AUC for enrichment of this + # feature. This fact can be used so that decompression times could be significantly reduced. + # def __init__(self, fname: str, name: str): super().__init__(fname, name)