From 320f66c8c88f357aa251abc2b15d0e7f3922038b Mon Sep 17 00:00:00 2001
From: bramvandesande <vandesande.bram@gmail.com>
Date: Fri, 10 May 2019 20:33:09 +0200
Subject: [PATCH] pySCENIC depends on latest version of loompy package.

---
 requirements.notebooks.txt | 2 +-
 requirements.txt           | 2 +-
 src/pyscenic/cli/utils.py  | 2 +-
 3 files changed, 3 insertions(+), 3 deletions(-)

diff --git a/requirements.notebooks.txt b/requirements.notebooks.txt
index 2778582..e354a9f 100644
--- a/requirements.notebooks.txt
+++ b/requirements.notebooks.txt
@@ -17,6 +17,6 @@ pyyaml
 tqdm
 interlap
 umap-learn
-loompy==2.0.2
+loompy
 networkx
 matplotlib
diff --git a/requirements.txt b/requirements.txt
index e376bef..6dedb72 100644
--- a/requirements.txt
+++ b/requirements.txt
@@ -17,5 +17,5 @@ pyyaml
 tqdm
 interlap
 umap-learn
-loompy==2.0.2
+loompy
 networkx
diff --git a/src/pyscenic/cli/utils.py b/src/pyscenic/cli/utils.py
index a047634..935e508 100644
--- a/src/pyscenic/cli/utils.py
+++ b/src/pyscenic/cli/utils.py
@@ -268,7 +268,7 @@ def create_structure_array(df):
         return np.array([tuple(row) for row in df.values],
                         dtype=np.dtype(list(zip(df.columns, df.dtypes))))
 
-    with lp.connect(fname) as ds:
+    with lp.connect(fname, validate=False) as ds:
         # The orientation of the loom file is always:
         #   - Columns represent cells or aggregates of cells
         # 	- Rows represent genes