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thesis.bib
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@article{cmu,
author = "David Scherer and Dan Valen",
title = "Balancing Multiple Roles of Repositories: Developing a Comprehensive Repository at Carnegie Mellon University",
journal = "Publications",
volume = "7",
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number = "30",
year = "2019",
month = "4",
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}
@article{godihno,
author = "Tiago Marques Godinho and Rui Lebre and João Rafael Almeida and Carlos Costa",
title = "ETL Framework for Real-Time Business Intelligence Over Medical Imaging Repositories",
journal = "J Digit Imaging",
volume = "32",
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pages = "870--879",
year = "2019",
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}
@article{nbdc,
author = "Shuichi Kawashima and Toshiaki Katayama and Hideki Hatanaka and Tatsuya Kushida and Toshihisa Takagi",
title = "NBDC RDF portal: a comprehensive repository for semantic data in life sciences",
journal = "Database",
volume = "2018",
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}
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}
@article{tragedy,
author = "Steve Van Tuyl and Josh Gum and Margaret Mellinger and Gregorio Luis Ramirez and Brandon Straley and Ryan Wick and Hui Zhang",
title = "Are we still working on this? A meta-retrospective of a digital repository migration in the form of a classic Greek Tragedy (in extreme violation of Aristotelian Unity of Time)",
journal = "code\{4\}lib",
issue = "41",
year = "2018",
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}
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author = "Anders Eklund and Thomas E. Nichols and Hans Knutsson",
title = "Cluster failure: Why fMRI inferences for spatial extent have inflated false-positive rates",
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}
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title = "Innkeeper at the Roach Motel",
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journal = {Library Trend},
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}
@article{austin,
author = "Claire C. Austin and Theodora Bloom and S\u{u}nje Dallmeier-Tiessen and Varsha K. Khodiyar and Fiona Murphy and Amy Nurnberger and Lisa Raymond and Martina Stockhause and Jonathan Tedds and Mary Vardigan and Angus Whyte",
title = "Key components of data publishing: using current best practices to develop a reference model for data publishing",
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doi = "10.1007/s00799-016-0178-2"
}
@article{lynch,
author = "Clifford A. Lynch",
title = "Institutional Repositories: Essential Infrastructure For Scholarship In The Digital Age",
journal = "Libraries and the Academy",
volume = "3",
number = "2",
pages = {327--336},
year = "2003",
month = "4",
doi = "10.1353/pla.2003.0039",
}
@article{seekblastn,
author = "Jennifer A. Byrne and Cyril Labb\`{e}",
title = "Striking similarities between publications from China describing single gene knockdown experiments in human cancer cell lines",
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}
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author = "Robert Sanderson and Mark Phillips and Herbert Van de Sompel",
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@article{rrid,
author = "Anita Bandrowski1 and Matthew Brush2 and Jeffery S. Grethe and Melissa A. Haendel and David N. Kennedy and Sean Hill and Patrick R. Hof and Maryann E. Martone1 and Maaike Pols and Serena Tan and Nicole Washington and Elena Zudilova-Seinstra and Nicole Vasilevsky",
title = "The Resource Identification Initiative: A cultural shift in publishing",
journal = "F1000Research",
volume = "4",
year = "2015",
number = "134",
doi = "10.12688/f1000research.6555.2"
}
@article{fair,
author = "Mark D. Wilkinson and Michel Dumontier and IJsbrand Jan Aalbersberg and Gabrielle Appleton and Myles Axton and Arie Baak and Niklas Blomberg and Jan-Willem Boiten and Luiz Bonino da Silva Santos and Philip E. Bourne and Jildau Bouwman and Anthony J. Brookes and Tim Clark and Mercè Crosas and Ingrid Dillo and Olivier Dumon and Scott Edmunds and Chris T. Evelo and Richard Finkers and Alejandra Gonzalez-Beltran and Alasdair J.G. Gray and Paul Groth and Carole Goble and Jeffrey S. Grethe and Jaap Heringa and Peter A.C ’t Hoen and Rob Hooft and Tobias Kuhn and Ruben Kok and Joost Kok and Scott J. Lusher and Maryann E. Martone and Albert Mons and Abel L. Packer and Bengt Persson and Philippe Rocca-Serra and Marco Roos and Rene van Schaik and Susanna-Assunta Sansone and Erik Schultes and Thierry Sengstag and Ted Slater and George Strawn and Morris A. Swertz and Mark Thompson and Johan van der Lei and Erik van Mulligen and Jan Velterop and Andra Waagmeester and Peter Wittenburg and Katherine Wolstencroft and Jun Zhao and Barend",
title = "The FAIR Guiding Principles for scientific data management and stewardship",
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}
@article{patriot,
author = "Joris van Hoboken and Axel Arnbak and N.A.N.M. van Eijk",
title = "Cloud Computing in Higher Education and Research Institutions and the USA Patriot Act",
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doi = "10.2139/ssrn.2181534"
}
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author = "Khaled El Emam and Sam Rodgers",
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}
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author = "Victoria Stodden and Jennifer Seiler and Zhaokun Ma",
title = {An empirical analysis of journal policy effectiveness for computational reproducibility},
volume = {115},
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pages = {2584--2589},
year = {2018},
doi = {10.1073/pnas.1708290115},
journal = {Proceedings of the National Academy of Sciences}
}
@article{federer,
author = "Lisa M. Federer and Ya-Ling Lu and Douglas J. Joubert and Judith Welsh and Barbara Brandys",
journal = {PLOS ONE},
title = {Biomedical Data Sharing and Reuse: Attitudes and Practices of Clinical and Scientific Research Staff},
year = 2015,
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}
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title = "Understanding data sharing behaviors of STEM researchers: The roles of attitudes, norms, and data repositories",
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}
@article{szabo,
title= {Formalizing and Securing Relationships on Public Networks}, volume= {2},
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@inproceedings{ferreira,
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title = {Finding Citations on Lume Institutional Repository},
booktitle = "Proceedings of Open Repositories 2019",
month = "6",
year = 2019
}
@inproceedings{kaplun,
author = "Samuele Kaplun",
title = "Invenio: A Modern Digital Library System",
booktitle = "Proceedings of Open Repositories 2010",
year = "2010",
month = "7"
}
@inproceedings{glauner,
author = "Patrick Oliver Glauner and Jan Iwaszkiewicz and Jean-Yves Le Meur and Tibor \v{S}imko",
title = "Use of Solr and Xapian in the Invenio document repository software",
booktitle = "Proceedings of Open Repositories 2013",
year = "2013",
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}
@inproceedings{ichim,
author = "Javier Jaén and Arthur Boronat and José Canós-Cerdá",
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author = "Simon Porter and Dan Valen",
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@inproceedings{101,
author = "Bianca Kramer and Jeroen Bosman",
title = "101 Innovations in Scholarly Communication - the Changing Research Workflow",
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}
@techreport{h2020,
author = "{Directorate-General for Research \& Innovation}",
title = "2020 Programme -- Guidelines to the Rules on Open Access to Scientific Publications and Open Access to Research Data in Horizon 2020",
institution = "European Commission",
number = "3.2",
year = "2017",
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}
@techreport{niso,
author = "Jenn Riley",
title = "Understanding Metadata: What is Metadata, and What is it For?: A Primer",
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}
@techreport{rdf,
author = "{W3C RDF Working Group}",
title = "Resource Description Framework (RDF)",
institution = "World Wide Web Consortium (W3C)",
month = 2,
year = 2014,
day = 25,
url = "https://www.w3.org/RDF/"
}
@techreport{dsbc,
title = "Blockchain for Research",
author = "Joris Van Rossum",
institution = "Digital Science",
month = 11,
year = 2017,
doi = "10.6084/m9.figshare.5607778.v1",
number = 1
}
@techreport{oa,
title = "The Ascent of Open Access",
author = "Daniel Hook and Mark Hahnel and Ian Calvert",
institution = "Digital Science",
month = 1,
year = 2019,
doi = "10.6084/m9.figshare.7618751.v2",
number = 2
}
@techreport{solidity,
title = "Solidity",
author = "Ethereum",
number = "6c089d02",
url = "https://web.archive.org/web/20200414234420/https://solidity.readthedocs.io/en/v0.6.6/",
year = 2020,
month = 4
}
@techreport{wellcome,
title = "Towards Open Research -- Practices, experiences, barriers and opportunities",
author = "Veerle Van den Eynden and Gareth Knight and Anca Vlad and Barry Radler and Carol Tenopir and David Leon and Frank Manista and Jimmy Whitworth and Louise Corti",
institution = "Wellcome Trust",
doi = "10.6084/m9.figshare.4055448.v1",
number = 1,
year = 2016,
month = 10
}
@techreport{ethdocs,
title = "Ethereum Homestead Documentation",
author = "Ethereum",
number = "41fc2c03",
url = "https://web.archive.org/web/20190729122759/http://ethdocs.org/en/latest/index.html",
year = 2017,
month = 2
}
@techreport{coar,
title = "Next Generation Repositories -- Behaviours and Technical Recommendations of the COAR Next Generation Repositories Working Group",
author = "Confederation of Open Access Repositories (COAR) Next Generation Repositories Working Group",
url = "https://web.archive.org/web/20200418013300/https://www.coar-repositories.org/files/NGR-Final-Formatted-Report-cc.pdf",
year = 2017,
month = 11,
day = 28
}
@techreport{sha2,
title = "Secure Hash Standard (SHS)",
author = "{National Institute of Standards and Technology (NIST)}",
url = "https://web.archive.org/web/20200605115126/https://csrc.nist.gov/publications/detail/fips/180/4/final",
year = 2015,
month = 8
}
@techreport{ethpap,
title = "Ethereum Whitepaper",
author = "Vitalik Buterin",
url = "https://web.archive.org/web/20200605163937/https://ethereum.org/whitepaper/",
year = 2013
}
@booklet{ccbyncndrisks,
author = "Paul Klimpel",
title = "Free Knowledge Based on Creative Commons Licences -- Consequences, risks and side-effects of the license module ``non-commercial use only - NC",
year = 2012,
url = "https://web.archive.org/web/20180402122740/https://openglam.org/files/2013/01/iRights_CC-NC_Guide_English.pdf"
}
@mastersthesis{challenges,
author = "Do Van Chau",
title = "Challenges of metadata migration in digital repository: a case study of the migration of DUO to Dspace at the University of Oslo Library",
year = "2011",
url = "http://hdl.handle.net/10642/990",
school = "Oslo University College"
}
@misc{nih,
author = "{National Institutes of Health}",
title = "NIH Public Access Policy Details",
url = "https://web.archive.org/web/20180421191423/https://publicaccess.nih.gov/policy.htm"
}
@misc{scidat,
author = "{Springer Nature}",
title = "Research Data Support",
url = "https://web.archive.org/web/20180309193834/https://www.springernature.com/gp/authors/research-data-policy"
}
@misc{elsdat,
author = "{Elsevier}",
title = "Sharing research data",
url = "https://web.archive.org/web/20180528101029/https://www.elsevier.com/authors/author-services/research-data/"
}
@misc{doihandle,
author = "{DOI Foundation}",
title = "DOI System and the Handle System",
url = "https://web.archive.org/web/20180112115303/https://www.doi.org/factsheets/DOIHandle.html"
}
@misc{anonrdata,
author = "Andrew Clark",
title = "Anonymising Research Data",
year = 2006,
url = "http://eprints.ncrm.ac.uk/480/"
}
@misc{gavin,
title = "Ethereum: A Secure Decentralised Generalised Transaction Ledger (Revision EIP-150)",
year = 2018,
author = "Gavin Wood",
url = "https://web.archive.org/web/20180414173431/http://gavwood.com/Paper.pdf"
}
@misc{elsevierapc,
title = "Policies: Pricing",
author = "Elsevier",
url = "https://web.archive.org/web/20191212051648/https://www.elsevier.com/about/policies/pricing"
}
@misc{snoa,
title = "Open Access -- Open Choice",
author = "Springer Nature",
url = "https://web.archive.org/web/20180403161002/http://www.springer.com/gp/open-access/springer-open-choice"
}
@misc{brown,
title = "Storing compressed text in Ethereum transaction logs",
author = "Jonathan Brown",
year = 2015,
month = 10,
url = "https://web.archive.org/web/20190915000510/http://jonathanpatrick.me/blog/ethereum-compressed-text"
}
@misc{invenioabout,
title = "About Invenio",
author = "{European Organization for Nuclear Research (CERN)}",
url = "https://invenio-software.org/about/"
}
@misc{figntro,
author = "Alan Hyndman",
title = "Announcing the figshare Institutional Repository...and Data Repository...and Thesis Repository...really just an all-in-one next gen repository",
url = "https://figshare.com/blog/Announcing_the_figshare_Institutional_Repository_and_Data_Repository_and_Thesis_Repository_really_just_an_all-in-one_next_gen_repository/389",
year = "2018",
month = "3"
}
@misc{cochran,
author = "Angela Cochran",
title = "What Will We Learn About Scholarly Publishing as a Result of COVID-19?",
url = "https://web.archive.org/web/20200429095457/https://scholarlykitchen.sspnet.org/2020/04/28/what-will-we-learn-about-scholarly-publishing-as-a-result-of-covid-19/",
year = "2020",
month = "4",
day = 28
}
@misc{mariadb,
author = "{MariaDB}",
title = "JSON Data Type",
url = "https://web.archive.org/web/20190404184410/https://mariadb.com/kb/en/library/json-data-type/"
}
@misc{googleld,
author = "{Google Inc.}",
title = "Understand how structured data works",
url = "https://web.archive.org/web/20200511000711/https://developers.google.com/search/docs/guides/intro-structured-data"
}
@misc{scigraph,
author = "{Springer Nature}",
title = "SciGraph -- A Linked Open Data platform for the scholarly domain",
url = "https://web.archive.org/web/20200510205513/https://www.springernature.com/gp/researchers/scigraph"
}
@misc{fir,
author = "Alan Hyndman",
title = "Announcing the figshare Institutional Repository...and Data Repository...and Thesis Repository...really just an all-in-one next gen repository",
url = "https://figshare.com/blog/Announcing_the_figshare_Institutional_Repository_and_Data_Repository_and_Thesis_Repository_really_just_an_all-in-one_next_gen_repository/389",
year = "2018",
month = "3"
}
@misc{elastic,
author = "{Elasticsearch BV}",
title = "What is Elasticsearch?",
url = "http://web.archive.org/web/20191207032247/https://www.elastic.co/what-is/elasticsearch"
}
@misc{chem,
author = "Alan Hyndman",
title = "Figshare to power ChemRxiv™ Beta, New Chemistry Preprint Server For The Global Chemistry Community",
url = "http://web.archive.org/web/20191218194210/https://figshare.com/blog/_/322",
year = "2017",
month = "8"
}
@misc{bridge,
author = "{The Samvera Community}",
title = "Bridge2Hyku",
url = "http://web.archive.org/web/20191218193423/https://bridge2hyku.github.io/toolkit/"
}
@misc{ref,
author = "{The REF Team}",
title = "Research Excellence Framework",
url = "http://web.archive.org/web/20191215143352/https://www.ref.ac.uk/"
}
@misc{bepressdash,
author = "Bepress",
title = "Digital Commons Dashboard",
url = "http://web.archive.org/web/20191218192450/https://www.bepress.com/reference_guide_dc/digital-commons-dashboard/"
}
@misc{mapping,
author = "{Elasticsearch BV}",
title = "Mapping",
url = "https://web.archive.org/web/20200420010546/https://www.elastic.co/guide/en/elasticsearch/reference/current/mapping.html"
}
@misc{bels,
author = "Roger C. Schonfeld",
title = "Elsevier Acquires bepress",
url = "http://web.archive.org/web/20191212183253/https://scholarlykitchen.sspnet.org/2017/08/02/elsevier-acquires-bepress/",
month = "8",
year = "2017"
}
@misc{dspacerdf,
author = "Lyrasis",
title = "DSpace -- Linked (Open) Data",
url = "https://web.archive.org/web/20200527224916/https://wiki.lyrasis.org/display/DSDOC6x/Linked+(Open)+Data"
}
@misc{gcp,
author = "Sergei Sokolenko",
title = "Designing ETL architecture for a cloud-native data warehouse on Google Cloud Platform",
url = "https://web.archive.org/save/https://cloud.google.com/blog/products/gcp/designing-etl-architecture-for-a-cloud-native-data-warehouse-on-google-cloud-platform",
month = 3,
year = 2017
}
@misc{dspacelead,
author = "Lyrasis",
title = "DSpace -- Leadership Group",
url = "https://web.archive.org/web/20190313185748/https://duraspace.org/dspace/community/leadership-group/"
}