DESCRIPTION

Package: Racmacs
Type: Package
Title: Antigenic Cartography Macros
Version: 1.2.9
Date: 2023-11-30
Authors@R: 
  c(person(given = "Sam",
           family = "Wilks",
           role = c("aut", "cre"),
           email = "sw463@cam.ac.uk"))
Description: A toolkit for making antigenic maps from immunological assay data,
    in order to quantify and visualize antigenic differences between different
    pathogen strains as described in
    Smith et al. (2004) <doi:10.1126/science.1097211> and used in the World
    Health Organization influenza vaccine strain selection process. Additional
    functions allow for the diagnostic evaluation of antigenic maps and an
    interactive viewer is provided to explore antigenic relationships amongst
    several strains and incorporate the visualization of associated genetic
    information.
Depends: R (>= 4.0)
Imports: 
    Rcpp,
    jsonlite,
    ks,
    brotli,
    shiny,
    shinyFiles,
    shinyjs,
    htmlwidgets,
    ggplot2 (>= 3.0.0),
    htmltools,
    rmarchingcubes,
    shape,
    MASS,
    magrittr,
    igraph,
    dplyr,
    vctrs,
    rlang (>= 1.0.0)
LazyData: TRUE
Suggests: 
    testthat,
    r3js,
    knitr,
    rmarkdown,
    rstudioapi,
    plotly,
    geometry,
    readxl,
    stringr,
    tibble,
    tidyr,
    base64enc,
    lifecycle,
    MCMCpack,
    spelling
LinkingTo: 
    Rcpp, 
    RcppArmadillo, 
    RcppProgress, 
    RcppEnsmallen, 
    rapidjsonr
Encoding: UTF-8
RoxygenNote: 7.2.3
Roxygen: list(markdown = TRUE)
VignetteBuilder: knitr
URL: https://acorg.github.io/Racmacs/, https://github.com/acorg/Racmacs/
BugReports: https://github.com/acorg/Racmacs/issues
License: AGPL-3
Language: en-GB