diff --git a/.github/workflows/test.yml b/.github/workflows/test.yml index cc528a02b..ffbf8c290 100644 --- a/.github/workflows/test.yml +++ b/.github/workflows/test.yml @@ -31,16 +31,13 @@ jobs: config: - os: windows-latest python: "3.9" - resolution: highest - extras: ci,optional + #extras: ci, optional - os: ubuntu-latest python: '>3.9' - resolution: highest - extras: ci,optional + #extras: ci, optional - os: macos-latest python: '3.10' - resolution: highest - extras: ci # test with only required dependencies installed + #extras: ci # test with only required dependencies installed # pytest-split automatically distributes work load so parallel jobs finish in similar time # update durations file with `pytest --store-durations --durations-path tests/files/.pytest-split-durations` @@ -65,10 +62,10 @@ jobs: #- name: Install uv # run: micromamba run -n abipy pip install uv - - name: Install pymatgen and dependencies - run: | - micromamba activate abipy - pip install --editable '.[${{ matrix.config.extras }}]' --resolution=${{ matrix.config.resolution }} + #- name: Install pymatgen and dependencies + # run: | + # micromamba activate abipy + # pip install --editable '.[${{ matrix.config.extras }}]' - name: pytest split ${{ matrix.split }} run: | diff --git a/abipy/dfpt/msqdos.py b/abipy/dfpt/msqdos.py index 488473c57..762b08fad 100644 --- a/abipy/dfpt/msqdos.py +++ b/abipy/dfpt/msqdos.py @@ -655,10 +655,10 @@ def plot_uiso(self, tstart=0, tstop=600, num=50, what="displ", view="inequivalen set_axlims(ax, ylims, "y") if what == "displ": ylabel = r"$U_{iso}\;(\AA^2)$" if ix == 0 else \ - r"Anisotropy factor ($\dfrac{\epsilon_{max}}{\epsilon_{min}}}$)" + r"Anisotropy factor ($\dfrac{\epsilon_{max}}{\epsilon_{min}}$)" elif what == "vel": ylabel = r"$V_{iso}\;(m/s)^2$" if ix == 0 else \ - r"Anisotropy factor ($\dfrac{\epsilon_{max}}{\epsilon_{min}}}$)" + r"Anisotropy factor ($\dfrac{\epsilon_{max}}{\epsilon_{min}$)" else: raise ValueError("Unknown value for what: `%s`" % str(what)) ax.set_ylabel(ylabel, fontsize=fontsize) diff --git a/docs/api/ml.rst b/docs/api/ml.rst index e223cf50e..850fd86b1 100644 --- a/docs/api/ml.rst +++ b/docs/api/ml.rst @@ -45,15 +45,6 @@ ml Package :show-inheritance: -:mod:`ml_relax` Package ------------------------ - -.. automodule:: abipy.ml.ml_relax - :members: - :undoc-members: - :show-inheritance: - - :mod:`relax_scanner` Package ---------------------------- diff --git a/docs/requirements.txt b/docs/requirements.txt index 5964769bc..f5a05cae4 100644 --- a/docs/requirements.txt +++ b/docs/requirements.txt @@ -10,6 +10,7 @@ sphinxcontrib-bibtex jupyter-sphinx #graphviz or python-graphviz if conda graphviz +scikit-image # For the time being: # solved the issue by matching jinja2 version and nb convert as follows