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Centrominer candidate file fields meaning #34

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V-JJ opened this issue May 17, 2024 · 0 comments
Open

Centrominer candidate file fields meaning #34

V-JJ opened this issue May 17, 2024 · 0 comments

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@V-JJ
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V-JJ commented May 17, 2024

Hello!

I'm trying to understand the meaning of Centrominer output *candidate.tsv files.
Here is a small example of our results.

# Chr	start	end	length	TRlength	TRcoverage
#	subTR	period	subTRlength	subTRcoverage	pattern
ctg82	2242095	2393236	151142	6577	4.35%
	ctg82@TR_00121	149	1534		TGTATTAGTGTTATCTTTTATAGAAAATT
	ctg82@TR_00099	141	1275	0.84%	AGTACGACTCAACCTTATTTTCTGTATTAGTGCTAT

I would like to ask you to explain the fields and numbers meaning in detail
Thanks in advance,

Vadim

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