diff --git a/scripts/ligand_receptor_analysis/LR_pair_analysis.ipynb b/scripts/ligand_receptor_analysis/LR_pair_analysis.ipynb new file mode 100644 index 0000000..bb31eb3 --- /dev/null +++ b/scripts/ligand_receptor_analysis/LR_pair_analysis.ipynb @@ -0,0 +1,33183 @@ +{ + "cells": [ + { + "cell_type": "code", + "execution_count": 1, + "id": "e2aa093b", + "metadata": {}, + "outputs": [], + "source": [ + "import os\n", + "\n", + "import numpy as np\n", + "import pandas as pd\n", + "import matplotlib.pyplot as plt\n", + "\n", + "import anndata\n", + "import scanpy as sc\n", + "sc.settings.n_jobs = 50\n", + "sc.settings.set_figure_params(dpi=300, dpi_save=300, frameon=False, figsize=(4, 4), fontsize=8, facecolor='white')" + ] + }, + { + "cell_type": "code", + "execution_count": 2, + "id": "ffdd20a9", + "metadata": {}, + "outputs": [], + "source": [ + "import scipy.spatial\n", + "import scipy.stats\n", + "import statsmodels.stats.multitest\n", + "\n", + "def get_close_contact_cell_pairs_cis(query_df, contact_radius, slice_col='slice_id', \n", + " xy_cols=['center_x', 'center_y']):\n", + " '''Get pairs of cells that are within a given contact radius'''\n", + " # Get the coordinates of the query cells \n", + " query_coords = np.array(query_df[xy_cols])\n", + " \n", + " # Get the contact cells slice-by-slice\n", + " slice_ids = np.unique(query_df[slice_col])\n", + " contact_cell_pairs = []\n", + " \n", + " for slice_id in slice_ids:\n", + " slice_mask_q = query_df[slice_col] == slice_id\n", + " \n", + " query_coords_slice = query_coords[slice_mask_q]\n", + " query_cell_id_slice = query_df.index[slice_mask_q]\n", + " \n", + " # Skip if there is no cell in this slice\n", + " if len(query_coords_slice) == 0:\n", + " continue\n", + " \n", + " # Get the cell pairs within the contact radius\n", + " point_tree = scipy.spatial.cKDTree(query_coords_slice)\n", + " neighbor_ids = point_tree.query_ball_point(query_coords_slice, contact_radius)\n", + " \n", + " for i in range(len(neighbor_ids)):\n", + " for j in neighbor_ids[i]:\n", + " if query_cell_id_slice[i] < query_cell_id_slice[j]:\n", + " contact_cell_pairs.append((query_cell_id_slice[i], query_cell_id_slice[j]))\n", + " \n", + " return np.array(contact_cell_pairs)\n", + "\n", + "def random_select_non_contact_cell_pairs_cis(query_df, contact_cell_pairs):\n", + " '''Random select non-contact cell pairs. The number of selected non-contact pairs are\n", + " the same as the number of the contact pairs.'''\n", + " non_contact_query_cells = list(query_df.index[~query_df.index.isin(\n", + " list(contact_cell_pairs[:, 0]) + list(contact_cell_pairs[:, 1]))])\n", + " np.random.shuffle(non_contact_query_cells)\n", + " N_ncs = len(non_contact_query_cells)\n", + " N_max_pairs = int(N_ncs * (N_ncs - 1) / 2)\n", + " N_pairs = len(contact_cell_pairs)\n", + " N_pairs = min(N_pairs, N_max_pairs)\n", + " \n", + " if N_pairs == 0:\n", + " return np.array([])\n", + " \n", + " return np.stack((np.random.choice(non_contact_query_cells[:N_ncs//2], N_pairs),\n", + " np.random.choice(non_contact_query_cells[N_ncs//2:], N_pairs)), axis=1)\n", + " \n", + "\n", + "def get_close_contact_cell_pairs(query_df, ref_df, contact_radius, slice_col='slice_id', \n", + " xy_cols=['center_x', 'center_y']):\n", + " '''Get pairs of cells that are within a given contact radius'''\n", + " \n", + " # Get the coordinates of the query cells and reference cells\n", + " query_coords = np.array(query_df[xy_cols])\n", + " ref_coords = np.array(ref_df[xy_cols])\n", + " \n", + " # Get the contact cells to reference cells slice-by-slice\n", + " slice_ids = np.unique(query_df[slice_col])\n", + " contact_cell_pairs = []\n", + " \n", + " for slice_id in slice_ids:\n", + " slice_mask_q = query_df[slice_col] == slice_id\n", + " slice_mask_r = ref_df[slice_col] == slice_id\n", + " \n", + " query_coords_slice = query_coords[slice_mask_q]\n", + " ref_coords_slice = ref_coords[slice_mask_r]\n", + " \n", + " query_cell_id_slice = query_df.index[slice_mask_q]\n", + " ref_cell_id_slice = ref_df.index[slice_mask_r]\n", + " \n", + " # Skip if there is no cell in this slice\n", + " if (len(query_coords_slice) == 0) or (len(ref_coords_slice) == 0):\n", + " continue\n", + " \n", + " # Get the cell pairs within the contact radius\n", + " point_tree = scipy.spatial.cKDTree(ref_coords_slice)\n", + " neighbor_ids = point_tree.query_ball_point(query_coords_slice, contact_radius)\n", + " \n", + " for i in range(len(neighbor_ids)):\n", + " for j in neighbor_ids[i]:\n", + " contact_cell_pairs.append((query_cell_id_slice[i], ref_cell_id_slice[j]))\n", + " \n", + " return np.array(contact_cell_pairs)\n", + "\n", + "def random_select_non_contact_cell_pairs(query_df, ref_df, contact_cell_pairs):\n", + " '''Random select non-contact cell pairs. The number of selected non-contact pairs are\n", + " the same as the number of the contact pairs.'''\n", + " non_contact_query_cells = query_df.index[~query_df.index.isin(contact_cell_pairs[:, 0])]\n", + " non_contact_ref_cells = ref_df.index[~ref_df.index.isin(contact_cell_pairs[:, 1])]\n", + " \n", + " N_max_pairs = len(non_contact_query_cells) * len(non_contact_ref_cells)\n", + " N_pairs = len(contact_cell_pairs)\n", + " N_pairs = min(N_pairs, N_max_pairs)\n", + " \n", + " if N_pairs == 0:\n", + " return np.array([])\n", + " \n", + " return np.stack((np.random.choice(non_contact_query_cells, N_pairs),\n", + " np.random.choice(non_contact_ref_cells, N_pairs)), axis=1)\n", + "\n", + "def random_select_cell_pairs(query_df, ref_df, contact_cell_pairs):\n", + " '''Random select cell pairs. The number of selected pairs are\n", + " the same as the number of the contact pairs.'''\n", + " N_pairs = len(contact_cell_pairs)\n", + " \n", + " return np.stack((np.random.choice(query_df.index, N_pairs),\n", + " np.random.choice(ref_df.index, N_pairs)), axis=1)\n", + "\n", + "def get_expressions_for_cells(adata, cell_names):\n", + " '''Get the expressions for given cells.'''\n", + " # Get the indices of cells\n", + " cell_id_map = pd.DataFrame({'cell_name': list(adata.obs.index), \n", + " 'index': list(range(adata.shape[0]))}).set_index('cell_name')\n", + " cell_ids = np.array(cell_id_map['index'].loc[cell_names])\n", + " return adata.X[cell_ids]\n", + " \n", + "\n", + "def get_lr_pair_expressions_for_cell_pairs(adata_ligand_cells, adata_receptor_cells, cell_pairs,\n", + " ligand_gene, receptor_gene):\n", + " '''Get the L-R pair expressions for a given set of cell pairs.'''\n", + " \n", + " # Get the indices of cells\n", + " ligand_cell_id_map = pd.DataFrame({'cell_id': list(adata_ligand_cells.obs.index), \n", + " 'index': list(range(adata_ligand_cells.shape[0]))}).set_index('cell_id')\n", + " receptor_cell_id_map = pd.DataFrame({'cell_id': list(adata_receptor_cells.obs.index), \n", + " 'index': list(range(adata_receptor_cells.shape[0]))}).set_index('cell_id')\n", + " \n", + " lig_cell_ids = np.array(ligand_cell_id_map['index'].loc[cell_pairs[:, 0]])\n", + " rec_cell_ids = np.array(receptor_cell_id_map['index'].loc[cell_pairs[:, 1]])\n", + " \n", + " # Get the indices of genes\n", + " lig_gene_id = np.where(adata_ligand_cells.var.index == ligand_gene)[0][0]\n", + " rec_gene_id = np.where(adata_receptor_cells.var.index == receptor_gene)[0][0]\n", + " \n", + " # Get the expressions\n", + " lig_exp = adata_ligand_cells.X[lig_cell_ids, lig_gene_id]\n", + " rec_exp = adata_receptor_cells.X[rec_cell_ids, rec_gene_id]\n", + " \n", + " return lig_exp * rec_exp" + ] + }, + { + "cell_type": "code", + "execution_count": 3, + "id": "e7edf4bf", + "metadata": {}, + "outputs": [], + "source": [ + "# Load the imputed lr expressions\n", + "adata_ligand = sc.read_h5ad('../imputed_lr_exps/adate_imputed_lr_pair_ligand_expression.h5ad')\n", + "adata_receptor = sc.read_h5ad('../imputed_lr_exps/adate_imputed_lr_pair_receptor_expression.h5ad')\n", + "\n", + "# Define the L-R pairs\n", + "lr_pairs = list(adata_ligand.var.index)\n", + "assert(np.all(np.array(adata_ligand.var.index) == np.array(adata_receptor.var.index)))\n", + "\n", + "# Find out which L-R pairs are symmetric\n", + "symmetric_lr_pairs = []\n", + "for lr_pair in lr_pairs:\n", + " lrps = lr_pair.split('_')\n", + " if (len(lrps) == 2) and (lrps[0] == lrps[1]):\n", + " symmetric_lr_pairs.append(lr_pair)" + ] + }, + { + "cell_type": "code", + "execution_count": 4, + "id": "4c43880e", + "metadata": {}, + "outputs": [ + { + "name": "stdout", + "output_type": "stream", + "text": [ + "Cerebellum\n" + ] + }, + { + "name": "stderr", + "output_type": "stream", + "text": [ + ":25: ImplicitModificationWarning: Trying to modify attribute `.obs` of view, initializing view as actual.\n", + ":28: ImplicitModificationWarning: Trying to modify attribute `.obs` of view, initializing view as actual.\n" + ] + }, + { + "name": "stdout", + "output_type": "stream", + "text": [ + "CB Granule Glut CB Granule Glut\n", + "N_contact_pairs = 2053926\n", + "N_noncontact_cell_pairs = 2053926\n" + ] + }, + { + "name": "stderr", + "output_type": "stream", + "text": [ + ":89: RuntimeWarning: divide by zero encountered in divide\n", + ":89: RuntimeWarning: invalid value encountered in divide\n" + ] + }, + { + "name": "stdout", + "output_type": "stream", + "text": [ + "Bergmann NN Bergmann NN\n", + "N_contact_pairs = 42393\n", + "N_noncontact_cell_pairs = 42393\n" + ] + }, + { + "name": "stderr", + "output_type": "stream", + "text": [ + ":89: RuntimeWarning: divide by zero encountered in divide\n", + ":89: RuntimeWarning: invalid value encountered in divide\n" + ] + }, + { + "name": "stdout", + "output_type": "stream", + "text": [ + "Bergmann NN CBX Purkinje Gaba\n", + "N_contact_pairs = 15454\n", + "N_noncontact_cell_pairs = 15454\n" + ] + }, + { + "name": "stderr", + "output_type": "stream", + "text": [ + ":89: RuntimeWarning: divide by zero encountered in divide\n", + ":89: RuntimeWarning: invalid value encountered in divide\n" + ] + }, + { + "name": "stdout", + "output_type": "stream", + "text": [ + "N_contact_pairs = 15454\n", + "N_noncontact_cell_pairs = 15454\n" + ] + }, + { + "name": "stderr", + "output_type": "stream", + "text": [ + ":89: RuntimeWarning: divide by zero encountered in divide\n", + ":89: RuntimeWarning: invalid value encountered in divide\n" + ] + }, + { + "name": "stdout", + "output_type": "stream", + "text": [ + "VLMC NN VLMC NN\n", + "N_contact_pairs = 9037\n", + "N_noncontact_cell_pairs = 9037\n" + ] + }, + { + "name": "stderr", + "output_type": "stream", + "text": [ + ":89: RuntimeWarning: divide by zero encountered in divide\n", + ":89: RuntimeWarning: invalid value encountered in divide\n" + ] + }, + { + "name": "stdout", + "output_type": "stream", + "text": [ + "SMC NN SMC NN\n", + "N_contact_pairs = 3292\n", + "N_noncontact_cell_pairs = 3292\n", + "SMC NN VLMC NN\n" + ] + }, + { + "name": "stderr", + "output_type": "stream", + "text": [ + ":89: RuntimeWarning: divide by zero encountered in divide\n", + ":89: RuntimeWarning: invalid value encountered in divide\n" + ] + }, + { + "name": "stdout", + "output_type": "stream", + "text": [ + "N_contact_pairs = 5183\n", + "N_noncontact_cell_pairs = 5183\n" + ] + }, + { + "name": "stderr", + "output_type": "stream", + "text": [ + ":89: RuntimeWarning: divide by zero encountered in divide\n", + ":89: RuntimeWarning: invalid value encountered in divide\n" + ] + }, + { + "name": "stdout", + "output_type": "stream", + "text": [ + "N_contact_pairs = 5183\n", + "N_noncontact_cell_pairs = 5183\n", + "Ependymal NN Ependymal NN\n" + ] + }, + { + "name": "stderr", + "output_type": "stream", + "text": [ + ":89: RuntimeWarning: divide by zero encountered in divide\n", + ":89: RuntimeWarning: invalid value encountered in divide\n", + ":89: RuntimeWarning: divide by zero encountered in divide\n", + ":89: RuntimeWarning: invalid value encountered in divide\n" + ] + }, + { + "name": "stdout", + "output_type": "stream", + "text": [ + "N_contact_pairs = 5440\n", + "N_noncontact_cell_pairs = 5440\n", + "Endo NN VLMC NN\n", + "N_contact_pairs = 11312\n", + "N_noncontact_cell_pairs = 11312\n" + ] + }, + { + "name": "stderr", + "output_type": "stream", + "text": [ + ":89: RuntimeWarning: divide by zero encountered in divide\n", + ":89: RuntimeWarning: invalid value encountered in divide\n" + ] + }, + { + "name": "stdout", + "output_type": "stream", + "text": [ + "N_contact_pairs = 11312\n", + "N_noncontact_cell_pairs = 11312\n" + ] + }, + { + "name": "stderr", + "output_type": "stream", + "text": [ + ":89: RuntimeWarning: divide by zero encountered in divide\n", + ":89: RuntimeWarning: invalid value encountered in divide\n" + ] + }, + { + "name": "stdout", + "output_type": "stream", + "text": [ + "Endo NN SMC NN\n", + "N_contact_pairs = 5952\n", + "N_noncontact_cell_pairs = 5952\n" + ] + }, + { + "name": "stderr", + "output_type": "stream", + "text": [ + ":89: RuntimeWarning: divide by zero encountered in divide\n", + ":89: RuntimeWarning: invalid value encountered in divide\n" + ] + }, + { + "name": "stdout", + "output_type": "stream", + "text": [ + "N_contact_pairs = 5952\n", + "N_noncontact_cell_pairs = 5952\n" + ] + }, + { + "name": "stderr", + "output_type": "stream", + "text": [ + ":89: RuntimeWarning: divide by zero encountered in divide\n", + ":89: RuntimeWarning: invalid value encountered in divide\n" + ] + }, + { + "name": "stdout", + "output_type": "stream", + "text": [ + "ABC NN VLMC NN\n", + "N_contact_pairs = 3292\n", + "N_noncontact_cell_pairs = 3292\n" + ] + }, + { + "name": "stderr", + "output_type": "stream", + "text": [ + ":89: RuntimeWarning: divide by zero encountered in divide\n", + ":89: RuntimeWarning: invalid value encountered in divide\n", + ":89: RuntimeWarning: divide by zero encountered in divide\n", + ":89: RuntimeWarning: invalid value encountered in divide\n" + ] + }, + { + "name": "stdout", + "output_type": "stream", + "text": [ + "N_contact_pairs = 3292\n", + "N_noncontact_cell_pairs = 3292\n", + "Bergmann NN CB PLI Gly-Gaba\n", + "N_contact_pairs = 4183\n", + "N_noncontact_cell_pairs = 4183\n" + ] + }, + { + "name": "stderr", + "output_type": "stream", + "text": [ + ":89: RuntimeWarning: divide by zero encountered in divide\n", + ":89: RuntimeWarning: invalid value encountered in divide\n" + ] + }, + { + "name": "stdout", + "output_type": "stream", + "text": [ + "N_contact_pairs = 4183\n", + "N_noncontact_cell_pairs = 4183\n", + "ABC NN ABC NN\n" + ] + }, + { + "name": "stderr", + "output_type": "stream", + "text": [ + ":89: RuntimeWarning: divide by zero encountered in divide\n", + ":89: RuntimeWarning: invalid value encountered in divide\n", + ":89: RuntimeWarning: divide by zero encountered in divide\n", + ":89: RuntimeWarning: invalid value encountered in divide\n" + ] + }, + { + "name": "stdout", + "output_type": "stream", + "text": [ + "N_contact_pairs = 1677\n", + "N_noncontact_cell_pairs = 1677\n", + "Oligo NN Oligo NN\n", + "N_contact_pairs = 24718\n", + "N_noncontact_cell_pairs = 24718\n" + ] + }, + { + "name": "stderr", + "output_type": "stream", + "text": [ + ":89: RuntimeWarning: divide by zero encountered in divide\n", + ":89: RuntimeWarning: invalid value encountered in divide\n" + ] + }, + { + "name": "stdout", + "output_type": "stream", + "text": [ + "BAM NN VLMC NN\n", + "N_contact_pairs = 2046\n", + "N_noncontact_cell_pairs = 2046\n" + ] + }, + { + "name": "stderr", + "output_type": "stream", + "text": [ + ":89: RuntimeWarning: divide by zero encountered in divide\n", + ":89: RuntimeWarning: invalid value encountered in divide\n", + ":89: RuntimeWarning: divide by zero encountered in divide\n", + ":89: RuntimeWarning: invalid value encountered in divide\n" + ] + }, + { + "name": "stdout", + "output_type": "stream", + "text": [ + "N_contact_pairs = 2046\n", + "N_noncontact_cell_pairs = 2046\n", + "CHOR NN CHOR NN\n", + "N_contact_pairs = 8237\n", + "N_noncontact_cell_pairs = 1275\n" + ] + }, + { + "name": "stderr", + "output_type": "stream", + "text": [ + ":89: RuntimeWarning: divide by zero encountered in divide\n", + ":89: RuntimeWarning: invalid value encountered in divide\n" + ] + }, + { + "name": "stdout", + "output_type": "stream", + "text": [ + "Endo NN Endo NN\n", + "N_contact_pairs = 14277\n", + "N_noncontact_cell_pairs = 14277\n" + ] + }, + { + "name": "stderr", + "output_type": "stream", + "text": [ + ":89: RuntimeWarning: divide by zero encountered in divide\n", + ":89: RuntimeWarning: invalid value encountered in divide\n" + ] + }, + { + "name": "stdout", + "output_type": "stream", + "text": [ + "Endo NN Peri NN\n", + "N_contact_pairs = 4913\n", + "N_noncontact_cell_pairs = 4913\n" + ] + }, + { + "name": "stderr", + "output_type": "stream", + "text": [ + ":89: RuntimeWarning: divide by zero encountered in divide\n", + ":89: RuntimeWarning: invalid value encountered in divide\n" + ] + }, + { + "name": "stdout", + "output_type": "stream", + "text": [ + "N_contact_pairs = 4913\n", + "N_noncontact_cell_pairs = 4913\n" + ] + }, + { + "name": "stderr", + "output_type": "stream", + "text": [ + ":89: RuntimeWarning: divide by zero encountered in divide\n", + ":89: RuntimeWarning: invalid value encountered in divide\n", + ":89: RuntimeWarning: divide by zero encountered in divide\n", + ":89: RuntimeWarning: invalid value encountered in divide\n" + ] + }, + { + "name": "stdout", + "output_type": "stream", + "text": [ + "CBX Purkinje Gaba CBX Purkinje Gaba\n", + "N_contact_pairs = 1330\n", + "N_noncontact_cell_pairs = 1330\n", + "Astro-CB NN Oligo NN\n", + "N_contact_pairs = 3061\n", + "N_noncontact_cell_pairs = 3061\n" + ] + }, + { + "name": "stderr", + "output_type": "stream", + "text": [ + ":89: RuntimeWarning: divide by zero encountered in divide\n", + ":89: RuntimeWarning: invalid value encountered in divide\n" + ] + }, + { + "name": "stdout", + "output_type": "stream", + "text": [ + "N_contact_pairs = 3061\n", + "N_noncontact_cell_pairs = 3061\n", + "CB PLI Gly-Gaba CBX Purkinje Gaba\n", + "N_contact_pairs = 950\n", + "N_noncontact_cell_pairs = 950\n" + ] + }, + { + "name": "stderr", + "output_type": "stream", + "text": [ + ":89: RuntimeWarning: divide by zero encountered in divide\n", + ":89: RuntimeWarning: invalid value encountered in divide\n", + ":89: RuntimeWarning: divide by zero encountered in divide\n", + ":89: RuntimeWarning: invalid value encountered in divide\n", + ":89: RuntimeWarning: divide by zero encountered in divide\n", + ":89: RuntimeWarning: invalid value encountered in divide\n" + ] + }, + { + "name": "stdout", + "output_type": "stream", + "text": [ + "N_contact_pairs = 950\n", + "N_noncontact_cell_pairs = 950\n", + "CB Granule Glut CBX Golgi Gly-Gaba\n", + "N_contact_pairs = 10482\n", + "N_noncontact_cell_pairs = 10482\n" + ] + }, + { + "name": "stderr", + "output_type": "stream", + "text": [ + ":89: RuntimeWarning: divide by zero encountered in divide\n", + ":89: RuntimeWarning: invalid value encountered in divide\n" + ] + }, + { + "name": "stdout", + "output_type": "stream", + "text": [ + "N_contact_pairs = 10482\n", + "N_noncontact_cell_pairs = 10482\n" + ] + }, + { + "name": "stderr", + "output_type": "stream", + "text": [ + ":89: RuntimeWarning: divide by zero encountered in divide\n", + ":89: RuntimeWarning: invalid value encountered in divide\n" + ] + }, + { + "name": "stdout", + "output_type": "stream", + "text": [ + "BAM NN Endo NN\n", + "N_contact_pairs = 1422\n", + "N_noncontact_cell_pairs = 1422\n" + ] + }, + { + "name": "stderr", + "output_type": "stream", + "text": [ + ":89: RuntimeWarning: divide by zero encountered in divide\n", + ":89: RuntimeWarning: invalid value encountered in divide\n" + ] + }, + { + "name": "stdout", + "output_type": "stream", + "text": [ + "N_contact_pairs = 1422\n", + "N_noncontact_cell_pairs = 1422\n", + "CBX MLI Megf11 Gaba CBX MLI Megf11 Gaba\n" + ] + }, + { + "name": "stderr", + "output_type": "stream", + "text": [ + ":89: RuntimeWarning: divide by zero encountered in divide\n", + ":89: RuntimeWarning: invalid value encountered in divide\n" + ] + }, + { + "name": "stdout", + "output_type": "stream", + "text": [ + "N_contact_pairs = 46258\n", + "N_noncontact_cell_pairs = 46258\n" + ] + }, + { + "name": "stderr", + "output_type": "stream", + "text": [ + ":89: RuntimeWarning: divide by zero encountered in divide\n", + ":89: RuntimeWarning: invalid value encountered in divide\n" + ] + }, + { + "name": "stdout", + "output_type": "stream", + "text": [ + "CBX MLI Cdh22 Gaba CBX MLI Megf11 Gaba\n", + "N_contact_pairs = 25273\n", + "N_noncontact_cell_pairs = 25273\n" + ] + }, + { + "name": "stderr", + "output_type": "stream", + "text": [ + ":89: RuntimeWarning: divide by zero encountered in divide\n", + ":89: RuntimeWarning: invalid value encountered in divide\n" + ] + }, + { + "name": "stdout", + "output_type": "stream", + "text": [ + "N_contact_pairs = 25273\n", + "N_noncontact_cell_pairs = 25273\n" + ] + }, + { + "name": "stderr", + "output_type": "stream", + "text": [ + ":89: RuntimeWarning: divide by zero encountered in divide\n", + ":89: RuntimeWarning: invalid value encountered in divide\n" + ] + }, + { + "name": "stdout", + "output_type": "stream", + "text": [ + "Microglia NN Oligo NN\n", + "N_contact_pairs = 3355\n", + "N_noncontact_cell_pairs = 3355\n" + ] + }, + { + "name": "stderr", + "output_type": "stream", + "text": [ + ":89: RuntimeWarning: divide by zero encountered in divide\n", + ":89: RuntimeWarning: invalid value encountered in divide\n" + ] + }, + { + "name": "stdout", + "output_type": "stream", + "text": [ + "N_contact_pairs = 3355\n", + "N_noncontact_cell_pairs = 3355\n", + "Endo NN Oligo NN\n" + ] + }, + { + "name": "stderr", + "output_type": "stream", + "text": [ + ":89: RuntimeWarning: divide by zero encountered in divide\n", + ":89: RuntimeWarning: invalid value encountered in divide\n" + ] + }, + { + "name": "stdout", + "output_type": "stream", + "text": [ + "N_contact_pairs = 12570\n", + "N_noncontact_cell_pairs = 12570\n" + ] + }, + { + "name": "stderr", + "output_type": "stream", + "text": [ + ":89: RuntimeWarning: divide by zero encountered in divide\n", + ":89: RuntimeWarning: invalid value encountered in divide\n" + ] + }, + { + "name": "stdout", + "output_type": "stream", + "text": [ + "N_contact_pairs = 12570\n", + "N_noncontact_cell_pairs = 12570\n" + ] + }, + { + "name": "stderr", + "output_type": "stream", + "text": [ + ":89: RuntimeWarning: divide by zero encountered in divide\n", + ":89: RuntimeWarning: invalid value encountered in divide\n", + ":89: RuntimeWarning: divide by zero encountered in divide\n", + ":89: RuntimeWarning: invalid value encountered in divide\n" + ] + }, + { + "name": "stdout", + "output_type": "stream", + "text": [ + "BAM NN SMC NN\n", + "N_contact_pairs = 442\n", + "N_noncontact_cell_pairs = 442\n", + "N_contact_pairs = 442\n", + "N_noncontact_cell_pairs = 442\n", + "Peri NN VLMC NN\n" + ] + }, + { + "name": "stderr", + "output_type": "stream", + "text": [ + ":89: RuntimeWarning: divide by zero encountered in divide\n", + ":89: RuntimeWarning: invalid value encountered in divide\n", + ":89: RuntimeWarning: divide by zero encountered in divide\n", + ":89: RuntimeWarning: invalid value encountered in divide\n" + ] + }, + { + "name": "stdout", + "output_type": "stream", + "text": [ + "N_contact_pairs = 1274\n", + "N_noncontact_cell_pairs = 1274\n", + "N_contact_pairs = 1274\n", + "N_noncontact_cell_pairs = 1274\n" + ] + }, + { + "name": "stderr", + "output_type": "stream", + "text": [ + ":89: RuntimeWarning: divide by zero encountered in divide\n", + ":89: RuntimeWarning: invalid value encountered in divide\n", + ":89: RuntimeWarning: divide by zero encountered in divide\n", + ":89: RuntimeWarning: invalid value encountered in divide\n" + ] + }, + { + "name": "stdout", + "output_type": "stream", + "text": [ + "OPC NN OPC NN\n", + "N_contact_pairs = 450\n", + "N_noncontact_cell_pairs = 450\n", + "CBX MLI Megf11 Gaba Endo NN\n", + "N_contact_pairs = 36334\n", + "N_noncontact_cell_pairs = 36334\n" + ] + }, + { + "name": "stderr", + "output_type": "stream", + "text": [ + ":89: RuntimeWarning: divide by zero encountered in divide\n", + ":89: RuntimeWarning: invalid value encountered in divide\n" + ] + }, + { + "name": "stdout", + "output_type": "stream", + "text": [ + "N_contact_pairs = 36334\n", + "N_noncontact_cell_pairs = 36334\n" + ] + }, + { + "name": "stderr", + "output_type": "stream", + "text": [ + ":89: RuntimeWarning: divide by zero encountered in divide\n", + ":89: RuntimeWarning: invalid value encountered in divide\n" + ] + }, + { + "name": "stdout", + "output_type": "stream", + "text": [ + "Bergmann NN Endo NN\n", + "N_contact_pairs = 13417\n", + "N_noncontact_cell_pairs = 13417\n" + ] + }, + { + "name": "stderr", + "output_type": "stream", + "text": [ + ":89: RuntimeWarning: divide by zero encountered in divide\n", + ":89: RuntimeWarning: invalid value encountered in divide\n" + ] + }, + { + "name": "stdout", + "output_type": "stream", + "text": [ + "N_contact_pairs = 13417\n", + "N_noncontact_cell_pairs = 13417\n" + ] + }, + { + "name": "stderr", + "output_type": "stream", + "text": [ + ":89: RuntimeWarning: divide by zero encountered in divide\n", + ":89: RuntimeWarning: invalid value encountered in divide\n" + ] + }, + { + "name": "stdout", + "output_type": "stream", + "text": [ + "Bergmann NN CB Granule Glut\n", + "N_contact_pairs = 140407\n", + "N_noncontact_cell_pairs = 140407\n" + ] + }, + { + "name": "stderr", + "output_type": "stream", + "text": [ + ":89: RuntimeWarning: divide by zero encountered in divide\n", + ":89: RuntimeWarning: invalid value encountered in divide\n" + ] + }, + { + "name": "stdout", + "output_type": "stream", + "text": [ + "N_contact_pairs = 140407\n", + "N_noncontact_cell_pairs = 140407\n" + ] + }, + { + "name": "stderr", + "output_type": "stream", + "text": [ + ":89: RuntimeWarning: divide by zero encountered in divide\n", + ":89: RuntimeWarning: invalid value encountered in divide\n" + ] + }, + { + "name": "stdout", + "output_type": "stream", + "text": [ + "OPC NN Oligo NN\n", + "N_contact_pairs = 3101\n", + "N_noncontact_cell_pairs = 3101\n" + ] + }, + { + "name": "stderr", + "output_type": "stream", + "text": [ + ":89: RuntimeWarning: divide by zero encountered in divide\n", + ":89: RuntimeWarning: invalid value encountered in divide\n" + ] + }, + { + "name": "stdout", + "output_type": "stream", + "text": [ + "N_contact_pairs = 3101\n", + "N_noncontact_cell_pairs = 3101\n", + "CHOR NN VLMC NN\n", + "N_contact_pairs = 1741\n", + "N_noncontact_cell_pairs = 1741\n" + ] + }, + { + "name": "stderr", + "output_type": "stream", + "text": [ + ":89: RuntimeWarning: divide by zero encountered in divide\n", + ":89: RuntimeWarning: invalid value encountered in divide\n", + ":89: RuntimeWarning: divide by zero encountered in divide\n", + ":89: RuntimeWarning: invalid value encountered in divide\n" + ] + }, + { + "name": "stdout", + "output_type": "stream", + "text": [ + "N_contact_pairs = 1741\n", + "N_noncontact_cell_pairs = 1741\n", + "CB Granule Glut CBX Purkinje Gaba\n" + ] + }, + { + "name": "stderr", + "output_type": "stream", + "text": [ + ":89: RuntimeWarning: divide by zero encountered in divide\n", + ":89: RuntimeWarning: invalid value encountered in divide\n" + ] + }, + { + "name": "stdout", + "output_type": "stream", + "text": [ + "N_contact_pairs = 30645\n", + "N_noncontact_cell_pairs = 30645\n" + ] + }, + { + "name": "stderr", + "output_type": "stream", + "text": [ + ":89: RuntimeWarning: divide by zero encountered in divide\n", + ":89: RuntimeWarning: invalid value encountered in divide\n" + ] + }, + { + "name": "stdout", + "output_type": "stream", + "text": [ + "N_contact_pairs = 30645\n", + "N_noncontact_cell_pairs = 30645\n" + ] + }, + { + "name": "stderr", + "output_type": "stream", + "text": [ + ":89: RuntimeWarning: divide by zero encountered in divide\n", + ":89: RuntimeWarning: invalid value encountered in divide\n" + ] + }, + { + "name": "stdout", + "output_type": "stream", + "text": [ + "Bergmann NN CBX Golgi Gly-Gaba\n", + "N_contact_pairs = 840\n", + "N_noncontact_cell_pairs = 840\n" + ] + }, + { + "name": "stderr", + "output_type": "stream", + "text": [ + ":89: RuntimeWarning: divide by zero encountered in divide\n", + ":89: RuntimeWarning: invalid value encountered in divide\n" + ] + }, + { + "name": "stdout", + "output_type": "stream", + "text": [ + "N_contact_pairs = 840\n", + "N_noncontact_cell_pairs = 840\n", + "ABC NN BAM NN\n", + "N_contact_pairs = 238\n", + "N_noncontact_cell_pairs = 238\n", + "N_contact_pairs = 238\n", + "N_noncontact_cell_pairs = 238\n", + "Astro-CB NN CB Granule Glut\n" + ] + }, + { + "name": "stderr", + "output_type": "stream", + "text": [ + ":89: RuntimeWarning: divide by zero encountered in divide\n", + ":89: RuntimeWarning: invalid value encountered in divide\n", + ":89: RuntimeWarning: divide by zero encountered in divide\n", + ":89: RuntimeWarning: invalid value encountered in divide\n", + ":89: RuntimeWarning: divide by zero encountered in divide\n", + ":89: RuntimeWarning: invalid value encountered in divide\n" + ] + }, + { + "name": "stdout", + "output_type": "stream", + "text": [ + "N_contact_pairs = 21628\n", + "N_noncontact_cell_pairs = 21628\n" + ] + }, + { + "name": "stderr", + "output_type": "stream", + "text": [ + ":89: RuntimeWarning: divide by zero encountered in divide\n", + ":89: RuntimeWarning: invalid value encountered in divide\n" + ] + }, + { + "name": "stdout", + "output_type": "stream", + "text": [ + "N_contact_pairs = 21628\n", + "N_noncontact_cell_pairs = 21628\n" + ] + }, + { + "name": "stderr", + "output_type": "stream", + "text": [ + ":89: RuntimeWarning: divide by zero encountered in divide\n", + ":89: RuntimeWarning: invalid value encountered in divide\n" + ] + }, + { + "name": "stdout", + "output_type": "stream", + "text": [ + "CB Granule Glut CB PLI Gly-Gaba\n", + "N_contact_pairs = 12702\n", + "N_noncontact_cell_pairs = 12702\n" + ] + }, + { + "name": "stderr", + "output_type": "stream", + "text": [ + ":89: RuntimeWarning: divide by zero encountered in divide\n", + ":89: RuntimeWarning: invalid value encountered in divide\n" + ] + }, + { + "name": "stdout", + "output_type": "stream", + "text": [ + "N_contact_pairs = 12702\n", + "N_noncontact_cell_pairs = 12702\n" + ] + }, + { + "name": "stderr", + "output_type": "stream", + "text": [ + ":89: RuntimeWarning: divide by zero encountered in divide\n", + ":89: RuntimeWarning: invalid value encountered in divide\n", + ":89: RuntimeWarning: divide by zero encountered in divide\n", + ":89: RuntimeWarning: invalid value encountered in divide\n" + ] + }, + { + "name": "stdout", + "output_type": "stream", + "text": [ + "DC NN VLMC NN\n", + "N_contact_pairs = 123\n", + "N_noncontact_cell_pairs = 123\n", + "N_contact_pairs = 123\n", + "N_noncontact_cell_pairs = 123\n", + "BAM NN BAM NN\n", + "N_contact_pairs = 133\n", + "N_noncontact_cell_pairs = 133\n", + "Lymphoid NN Lymphoid NN\n" + ] + }, + { + "name": "stderr", + "output_type": "stream", + "text": [ + ":89: RuntimeWarning: divide by zero encountered in divide\n", + ":89: RuntimeWarning: invalid value encountered in divide\n", + ":89: RuntimeWarning: divide by zero encountered in divide\n", + ":89: RuntimeWarning: invalid value encountered in divide\n", + ":89: RuntimeWarning: divide by zero encountered in divide\n", + ":89: RuntimeWarning: invalid value encountered in divide\n", + ":89: RuntimeWarning: divide by zero encountered in divide\n", + ":89: RuntimeWarning: invalid value encountered in divide\n" + ] + }, + { + "name": "stdout", + "output_type": "stream", + "text": [ + "N_contact_pairs = 36\n", + "N_noncontact_cell_pairs = 36\n", + "Astro-CB NN Astro-CB NN\n", + "N_contact_pairs = 347\n", + "N_noncontact_cell_pairs = 347\n", + "Astro-CB NN Bergmann NN\n", + "N_contact_pairs = 931\n", + "N_noncontact_cell_pairs = 931\n" + ] + }, + { + "name": "stderr", + "output_type": "stream", + "text": [ + ":89: RuntimeWarning: divide by zero encountered in divide\n", + ":89: RuntimeWarning: invalid value encountered in divide\n" + ] + }, + { + "name": "stdout", + "output_type": "stream", + "text": [ + "N_contact_pairs = 931\n", + "N_noncontact_cell_pairs = 931\n", + "Bergmann NN Peri NN\n" + ] + }, + { + "name": "stderr", + "output_type": "stream", + "text": [ + ":89: RuntimeWarning: divide by zero encountered in divide\n", + ":89: RuntimeWarning: invalid value encountered in divide\n" + ] + }, + { + "name": "stdout", + "output_type": "stream", + "text": [ + "N_contact_pairs = 2304\n", + "N_noncontact_cell_pairs = 2304\n" + ] + }, + { + "name": "stderr", + "output_type": "stream", + "text": [ + ":89: RuntimeWarning: divide by zero encountered in divide\n", + ":89: RuntimeWarning: invalid value encountered in divide\n" + ] + }, + { + "name": "stdout", + "output_type": "stream", + "text": [ + "N_contact_pairs = 2304\n", + "N_noncontact_cell_pairs = 2304\n", + "Lymphoid NN VLMC NN\n" + ] + }, + { + "name": "stderr", + "output_type": "stream", + "text": [ + ":89: RuntimeWarning: divide by zero encountered in divide\n", + ":89: RuntimeWarning: invalid value encountered in divide\n", + ":89: RuntimeWarning: divide by zero encountered in divide\n", + ":89: RuntimeWarning: invalid value encountered in divide\n" + ] + }, + { + "name": "stdout", + "output_type": "stream", + "text": [ + "N_contact_pairs = 184\n", + "N_noncontact_cell_pairs = 184\n", + "N_contact_pairs = 184\n", + "N_noncontact_cell_pairs = 184\n", + "BAM NN Peri NN\n", + "N_contact_pairs = 200\n", + "N_noncontact_cell_pairs = 200\n" + ] + }, + { + "name": "stderr", + "output_type": "stream", + "text": [ + ":89: RuntimeWarning: divide by zero encountered in divide\n", + ":89: RuntimeWarning: invalid value encountered in divide\n", + ":89: RuntimeWarning: divide by zero encountered in divide\n", + ":89: RuntimeWarning: invalid value encountered in divide\n", + ":89: RuntimeWarning: divide by zero encountered in divide\n", + ":89: RuntimeWarning: invalid value encountered in divide\n" + ] + }, + { + "name": "stdout", + "output_type": "stream", + "text": [ + "N_contact_pairs = 200\n", + "N_noncontact_cell_pairs = 200\n", + "Oligo NN Peri NN\n", + "N_contact_pairs = 2041\n", + "N_noncontact_cell_pairs = 2041\n" + ] + }, + { + "name": "stderr", + "output_type": "stream", + "text": [ + ":89: RuntimeWarning: divide by zero encountered in divide\n", + ":89: RuntimeWarning: invalid value encountered in divide\n" + ] + }, + { + "name": "stdout", + "output_type": "stream", + "text": [ + "N_contact_pairs = 2041\n", + "N_noncontact_cell_pairs = 2041\n", + "CB Granule Glut DCO UBC Glut\n" + ] + }, + { + "name": "stderr", + "output_type": "stream", + "text": [ + ":89: RuntimeWarning: divide by zero encountered in divide\n", + ":89: RuntimeWarning: invalid value encountered in divide\n" + ] + }, + { + "name": "stdout", + "output_type": "stream", + "text": [ + "N_contact_pairs = 4882\n", + "N_noncontact_cell_pairs = 4882\n" + ] + }, + { + "name": "stderr", + "output_type": "stream", + "text": [ + ":89: RuntimeWarning: divide by zero encountered in divide\n", + ":89: RuntimeWarning: invalid value encountered in divide\n" + ] + }, + { + "name": "stdout", + "output_type": "stream", + "text": [ + "N_contact_pairs = 4882\n", + "N_noncontact_cell_pairs = 4882\n" + ] + }, + { + "name": "stderr", + "output_type": "stream", + "text": [ + ":89: RuntimeWarning: divide by zero encountered in divide\n", + ":89: RuntimeWarning: invalid value encountered in divide\n" + ] + }, + { + "name": "stdout", + "output_type": "stream", + "text": [ + "CBX MLI Megf11 Gaba Peri NN\n", + "N_contact_pairs = 5654\n", + "N_noncontact_cell_pairs = 5654\n" + ] + }, + { + "name": "stderr", + "output_type": "stream", + "text": [ + ":89: RuntimeWarning: divide by zero encountered in divide\n", + ":89: RuntimeWarning: invalid value encountered in divide\n" + ] + }, + { + "name": "stdout", + "output_type": "stream", + "text": [ + "N_contact_pairs = 5654\n", + "N_noncontact_cell_pairs = 5654\n" + ] + }, + { + "name": "stderr", + "output_type": "stream", + "text": [ + ":89: RuntimeWarning: divide by zero encountered in divide\n", + ":89: RuntimeWarning: invalid value encountered in divide\n", + ":89: RuntimeWarning: divide by zero encountered in divide\n", + ":89: RuntimeWarning: invalid value encountered in divide\n", + ":89: RuntimeWarning: divide by zero encountered in divide\n", + ":89: RuntimeWarning: invalid value encountered in divide\n" + ] + }, + { + "name": "stdout", + "output_type": "stream", + "text": [ + "CBX Golgi Gly-Gaba CBX Purkinje Gaba\n", + "N_contact_pairs = 221\n", + "N_noncontact_cell_pairs = 221\n", + "N_contact_pairs = 221\n", + "N_noncontact_cell_pairs = 221\n", + "Astro-CB NN Endo NN\n", + "N_contact_pairs = 957\n", + "N_noncontact_cell_pairs = 957\n" + ] + }, + { + "name": "stderr", + "output_type": "stream", + "text": [ + ":89: RuntimeWarning: divide by zero encountered in divide\n", + ":89: RuntimeWarning: invalid value encountered in divide\n" + ] + }, + { + "name": "stdout", + "output_type": "stream", + "text": [ + "N_contact_pairs = 957\n", + "N_noncontact_cell_pairs = 957\n", + "ABC NN Endo NN\n" + ] + }, + { + "name": "stderr", + "output_type": "stream", + "text": [ + ":89: RuntimeWarning: divide by zero encountered in divide\n", + ":89: RuntimeWarning: invalid value encountered in divide\n" + ] + }, + { + "name": "stdout", + "output_type": "stream", + "text": [ + "N_contact_pairs = 916\n", + "N_noncontact_cell_pairs = 916\n" + ] + }, + { + "name": "stderr", + "output_type": "stream", + "text": [ + ":89: RuntimeWarning: divide by zero encountered in divide\n", + ":89: RuntimeWarning: invalid value encountered in divide\n" + ] + }, + { + "name": "stdout", + "output_type": "stream", + "text": [ + "N_contact_pairs = 916\n", + "N_noncontact_cell_pairs = 916\n", + "Microglia NN Microglia NN\n", + "N_contact_pairs = 230\n", + "N_noncontact_cell_pairs = 230\n", + "Endo NN Microglia NN\n" + ] + }, + { + "name": "stderr", + "output_type": "stream", + "text": [ + ":89: RuntimeWarning: divide by zero encountered in divide\n", + ":89: RuntimeWarning: invalid value encountered in divide\n", + ":89: RuntimeWarning: divide by zero encountered in divide\n", + ":89: RuntimeWarning: invalid value encountered in divide\n" + ] + }, + { + "name": "stdout", + "output_type": "stream", + "text": [ + "N_contact_pairs = 2297\n", + "N_noncontact_cell_pairs = 2297\n" + ] + }, + { + "name": "stderr", + "output_type": "stream", + "text": [ + ":89: RuntimeWarning: divide by zero encountered in divide\n", + ":89: RuntimeWarning: invalid value encountered in divide\n" + ] + }, + { + "name": "stdout", + "output_type": "stream", + "text": [ + "N_contact_pairs = 2297\n", + "N_noncontact_cell_pairs = 2297\n", + "Endo NN Lymphoid NN\n" + ] + }, + { + "name": "stderr", + "output_type": "stream", + "text": [ + ":89: RuntimeWarning: divide by zero encountered in divide\n", + ":89: RuntimeWarning: invalid value encountered in divide\n" + ] + }, + { + "name": "stdout", + "output_type": "stream", + "text": [ + "N_contact_pairs = 283\n", + "N_noncontact_cell_pairs = 283\n" + ] + }, + { + "name": "stderr", + "output_type": "stream", + "text": [ + ":89: RuntimeWarning: divide by zero encountered in divide\n", + ":89: RuntimeWarning: invalid value encountered in divide\n" + ] + }, + { + "name": "stdout", + "output_type": "stream", + "text": [ + "N_contact_pairs = 283\n", + "N_noncontact_cell_pairs = 283\n", + "BAM NN CHOR NN\n", + "N_contact_pairs = 313\n", + "N_noncontact_cell_pairs = 313\n", + "N_contact_pairs = 313\n", + "N_noncontact_cell_pairs = 313\n", + "Peri NN Peri NN\n" + ] + }, + { + "name": "stderr", + "output_type": "stream", + "text": [ + ":89: RuntimeWarning: divide by zero encountered in divide\n", + ":89: RuntimeWarning: invalid value encountered in divide\n", + ":89: RuntimeWarning: divide by zero encountered in divide\n", + ":89: RuntimeWarning: invalid value encountered in divide\n", + ":89: RuntimeWarning: divide by zero encountered in divide\n", + ":89: RuntimeWarning: invalid value encountered in divide\n", + ":89: RuntimeWarning: divide by zero encountered in divide\n", + ":89: RuntimeWarning: invalid value encountered in divide\n", + ":89: RuntimeWarning: divide by zero encountered in divide\n", + ":89: RuntimeWarning: invalid value encountered in divide\n" + ] + }, + { + "name": "stdout", + "output_type": "stream", + "text": [ + "N_contact_pairs = 345\n", + "N_noncontact_cell_pairs = 345\n", + "CBN Dmbx1 Gaba CBN Dmbx1 Gaba\n", + "N_contact_pairs = 390\n", + "N_noncontact_cell_pairs = 390\n", + "CBX MLI Cdh22 Gaba CBX MLI Cdh22 Gaba\n", + "N_contact_pairs = 3454\n", + "N_noncontact_cell_pairs = 3454\n" + ] + }, + { + "name": "stderr", + "output_type": "stream", + "text": [ + ":89: RuntimeWarning: divide by zero encountered in divide\n", + ":89: RuntimeWarning: invalid value encountered in divide\n", + ":89: RuntimeWarning: divide by zero encountered in divide\n", + ":89: RuntimeWarning: invalid value encountered in divide\n", + ":89: RuntimeWarning: divide by zero encountered in divide\n", + ":89: RuntimeWarning: invalid value encountered in divide\n" + ] + }, + { + "name": "stdout", + "output_type": "stream", + "text": [ + "Ependymal NN Microglia NN\n", + "N_contact_pairs = 242\n", + "N_noncontact_cell_pairs = 242\n", + "N_contact_pairs = 242\n", + "N_noncontact_cell_pairs = 242\n", + "Bergmann NN CBX MLI Megf11 Gaba\n", + "N_contact_pairs = 27608\n", + "N_noncontact_cell_pairs = 27608\n" + ] + }, + { + "name": "stderr", + "output_type": "stream", + "text": [ + ":89: RuntimeWarning: divide by zero encountered in divide\n", + ":89: RuntimeWarning: invalid value encountered in divide\n" + ] + }, + { + "name": "stdout", + "output_type": "stream", + "text": [ + "N_contact_pairs = 27608\n", + "N_noncontact_cell_pairs = 27608\n" + ] + }, + { + "name": "stderr", + "output_type": "stream", + "text": [ + ":89: RuntimeWarning: divide by zero encountered in divide\n", + ":89: RuntimeWarning: invalid value encountered in divide\n" + ] + }, + { + "name": "stdout", + "output_type": "stream", + "text": [ + "ABC NN SMC NN\n", + "N_contact_pairs = 286\n", + "N_noncontact_cell_pairs = 286\n", + "N_contact_pairs = 286\n", + "N_noncontact_cell_pairs = 286\n", + "CBX MLI Megf11 Gaba OPC NN\n" + ] + }, + { + "name": "stderr", + "output_type": "stream", + "text": [ + ":89: RuntimeWarning: divide by zero encountered in divide\n", + ":89: RuntimeWarning: invalid value encountered in divide\n", + ":89: RuntimeWarning: divide by zero encountered in divide\n", + ":89: RuntimeWarning: invalid value encountered in divide\n" + ] + }, + { + "name": "stdout", + "output_type": "stream", + "text": [ + "N_contact_pairs = 4039\n", + "N_noncontact_cell_pairs = 4039\n" + ] + }, + { + "name": "stderr", + "output_type": "stream", + "text": [ + ":89: RuntimeWarning: divide by zero encountered in divide\n", + ":89: RuntimeWarning: invalid value encountered in divide\n" + ] + }, + { + "name": "stdout", + "output_type": "stream", + "text": [ + "N_contact_pairs = 4039\n", + "N_noncontact_cell_pairs = 4039\n" + ] + }, + { + "name": "stderr", + "output_type": "stream", + "text": [ + ":89: RuntimeWarning: divide by zero encountered in divide\n", + ":89: RuntimeWarning: invalid value encountered in divide\n", + ":89: RuntimeWarning: divide by zero encountered in divide\n", + ":89: RuntimeWarning: invalid value encountered in divide\n", + ":89: RuntimeWarning: divide by zero encountered in divide\n", + ":89: RuntimeWarning: invalid value encountered in divide\n" + ] + }, + { + "name": "stdout", + "output_type": "stream", + "text": [ + "Microglia NN OPC NN\n", + "N_contact_pairs = 413\n", + "N_noncontact_cell_pairs = 413\n", + "N_contact_pairs = 413\n", + "N_noncontact_cell_pairs = 413\n", + "Astro-CB NN Microglia NN\n", + "N_contact_pairs = 202\n", + "N_noncontact_cell_pairs = 202\n", + "N_contact_pairs = 202\n", + "N_noncontact_cell_pairs = 202\n", + "CBX MLI Cdh22 Gaba Endo NN\n" + ] + }, + { + "name": "stderr", + "output_type": "stream", + "text": [ + ":89: RuntimeWarning: divide by zero encountered in divide\n", + ":89: RuntimeWarning: invalid value encountered in divide\n", + ":89: RuntimeWarning: divide by zero encountered in divide\n", + ":89: RuntimeWarning: invalid value encountered in divide\n" + ] + }, + { + "name": "stdout", + "output_type": "stream", + "text": [ + "N_contact_pairs = 8939\n", + "N_noncontact_cell_pairs = 8939\n" + ] + }, + { + "name": "stderr", + "output_type": "stream", + "text": [ + ":89: RuntimeWarning: divide by zero encountered in divide\n", + ":89: RuntimeWarning: invalid value encountered in divide\n" + ] + }, + { + "name": "stdout", + "output_type": "stream", + "text": [ + "N_contact_pairs = 8939\n", + "N_noncontact_cell_pairs = 8939\n" + ] + }, + { + "name": "stderr", + "output_type": "stream", + "text": [ + ":89: RuntimeWarning: divide by zero encountered in divide\n", + ":89: RuntimeWarning: invalid value encountered in divide\n" + ] + }, + { + "name": "stdout", + "output_type": "stream", + "text": [ + "CBN Dmbx1 Gaba Oligo NN\n", + "N_contact_pairs = 2216\n", + "N_noncontact_cell_pairs = 2216\n" + ] + }, + { + "name": "stderr", + "output_type": "stream", + "text": [ + ":89: RuntimeWarning: divide by zero encountered in divide\n", + ":89: RuntimeWarning: invalid value encountered in divide\n" + ] + }, + { + "name": "stdout", + "output_type": "stream", + "text": [ + "N_contact_pairs = 2216\n", + "N_noncontact_cell_pairs = 2216\n", + "Endo NN VCO Mafa Meis2 Glut\n" + ] + }, + { + "name": "stderr", + "output_type": "stream", + "text": [ + ":89: RuntimeWarning: divide by zero encountered in divide\n", + ":89: RuntimeWarning: invalid value encountered in divide\n" + ] + }, + { + "name": "stdout", + "output_type": "stream", + "text": [ + "N_contact_pairs = 602\n", + "N_noncontact_cell_pairs = 602\n", + "N_contact_pairs = 602\n", + "N_noncontact_cell_pairs = 602\n" + ] + }, + { + "name": "stderr", + "output_type": "stream", + "text": [ + ":89: RuntimeWarning: divide by zero encountered in divide\n", + ":89: RuntimeWarning: invalid value encountered in divide\n", + ":89: RuntimeWarning: divide by zero encountered in divide\n", + ":89: RuntimeWarning: invalid value encountered in divide\n" + ] + }, + { + "name": "stdout", + "output_type": "stream", + "text": [ + "Ependymal NN VLMC NN\n", + "N_contact_pairs = 434\n", + "N_noncontact_cell_pairs = 434\n", + "N_contact_pairs = 434\n", + "N_noncontact_cell_pairs = 434\n", + "Astro-CB NN CBX Purkinje Gaba\n" + ] + }, + { + "name": "stderr", + "output_type": "stream", + "text": [ + ":89: RuntimeWarning: divide by zero encountered in divide\n", + ":89: RuntimeWarning: invalid value encountered in divide\n", + ":89: RuntimeWarning: divide by zero encountered in divide\n", + ":89: RuntimeWarning: invalid value encountered in divide\n", + ":89: RuntimeWarning: divide by zero encountered in divide\n", + ":89: RuntimeWarning: invalid value encountered in divide\n" + ] + }, + { + "name": "stdout", + "output_type": "stream", + "text": [ + "N_contact_pairs = 184\n", + "N_noncontact_cell_pairs = 184\n", + "N_contact_pairs = 184\n", + "N_noncontact_cell_pairs = 184\n", + "DCO UBC Glut DCO UBC Glut\n", + "N_contact_pairs = 725\n", + "N_noncontact_cell_pairs = 725\n", + "Lymphoid NN SMC NN\n", + "N_contact_pairs = 55\n", + "N_noncontact_cell_pairs = 55\n" + ] + }, + { + "name": "stderr", + "output_type": "stream", + "text": [ + ":89: RuntimeWarning: divide by zero encountered in divide\n", + ":89: RuntimeWarning: invalid value encountered in divide\n", + ":89: RuntimeWarning: divide by zero encountered in divide\n", + ":89: RuntimeWarning: invalid value encountered in divide\n", + ":89: RuntimeWarning: divide by zero encountered in divide\n", + ":89: RuntimeWarning: invalid value encountered in divide\n", + ":89: RuntimeWarning: divide by zero encountered in divide\n", + ":89: RuntimeWarning: invalid value encountered in divide\n", + ":89: RuntimeWarning: divide by zero encountered in divide\n", + ":89: RuntimeWarning: invalid value encountered in divide\n" + ] + }, + { + "name": "stdout", + "output_type": "stream", + "text": [ + "N_contact_pairs = 55\n", + "N_noncontact_cell_pairs = 55\n", + "CB PLI Gly-Gaba CB PLI Gly-Gaba\n", + "N_contact_pairs = 150\n", + "N_noncontact_cell_pairs = 150\n", + "Astro-CB NN OPC NN\n", + "N_contact_pairs = 166\n", + "N_noncontact_cell_pairs = 166\n", + "N_contact_pairs = 166\n", + "N_noncontact_cell_pairs = 166\n", + "LDT Fgf7 Gaba LDT Fgf7 Gaba\n", + "N_contact_pairs = 26\n", + "N_noncontact_cell_pairs = 26\n", + "Microglia NN Peri NN\n" + ] + }, + { + "name": "stderr", + "output_type": "stream", + "text": [ + ":89: RuntimeWarning: divide by zero encountered in divide\n", + ":89: RuntimeWarning: invalid value encountered in divide\n", + ":89: RuntimeWarning: divide by zero encountered in divide\n", + ":89: RuntimeWarning: invalid value encountered in divide\n", + ":89: RuntimeWarning: divide by zero encountered in divide\n", + ":89: RuntimeWarning: invalid value encountered in divide\n", + ":89: RuntimeWarning: divide by zero encountered in divide\n", + ":89: RuntimeWarning: invalid value encountered in divide\n" + ] + }, + { + "name": "stdout", + "output_type": "stream", + "text": [ + "N_contact_pairs = 378\n", + "N_noncontact_cell_pairs = 378\n", + "N_contact_pairs = 378\n", + "N_noncontact_cell_pairs = 378\n", + "DC NN Endo NN\n" + ] + }, + { + "name": "stderr", + "output_type": "stream", + "text": [ + ":89: RuntimeWarning: divide by zero encountered in divide\n", + ":89: RuntimeWarning: invalid value encountered in divide\n" + ] + }, + { + "name": "stdout", + "output_type": "stream", + "text": [ + "N_contact_pairs = 67\n", + "N_noncontact_cell_pairs = 67\n" + ] + }, + { + "name": "stderr", + "output_type": "stream", + "text": [ + ":89: RuntimeWarning: divide by zero encountered in divide\n", + ":89: RuntimeWarning: invalid value encountered in divide\n" + ] + }, + { + "name": "stdout", + "output_type": "stream", + "text": [ + "N_contact_pairs = 67\n", + "N_noncontact_cell_pairs = 67\n", + "Oligo NN VCO Mafa Meis2 Glut\n" + ] + }, + { + "name": "stderr", + "output_type": "stream", + "text": [ + ":89: RuntimeWarning: divide by zero encountered in divide\n", + ":89: RuntimeWarning: invalid value encountered in divide\n" + ] + }, + { + "name": "stdout", + "output_type": "stream", + "text": [ + "N_contact_pairs = 716\n", + "N_noncontact_cell_pairs = 716\n", + "N_contact_pairs = 716\n", + "N_noncontact_cell_pairs = 716\n" + ] + }, + { + "name": "stderr", + "output_type": "stream", + "text": [ + ":89: RuntimeWarning: divide by zero encountered in divide\n", + ":89: RuntimeWarning: invalid value encountered in divide\n", + ":89: RuntimeWarning: divide by zero encountered in divide\n", + ":89: RuntimeWarning: invalid value encountered in divide\n" + ] + }, + { + "name": "stdout", + "output_type": "stream", + "text": [ + "CBX MLI Cdh22 Gaba Peri NN\n", + "N_contact_pairs = 1446\n", + "N_noncontact_cell_pairs = 1446\n" + ] + }, + { + "name": "stderr", + "output_type": "stream", + "text": [ + ":89: RuntimeWarning: divide by zero encountered in divide\n", + ":89: RuntimeWarning: invalid value encountered in divide\n" + ] + }, + { + "name": "stdout", + "output_type": "stream", + "text": [ + "N_contact_pairs = 1446\n", + "N_noncontact_cell_pairs = 1446\n", + "CBX MLI Cdh22 Gaba OPC NN\n" + ] + }, + { + "name": "stderr", + "output_type": "stream", + "text": [ + ":89: RuntimeWarning: divide by zero encountered in divide\n", + ":89: RuntimeWarning: invalid value encountered in divide\n", + ":89: RuntimeWarning: divide by zero encountered in divide\n", + ":89: RuntimeWarning: invalid value encountered in divide\n" + ] + }, + { + "name": "stdout", + "output_type": "stream", + "text": [ + "N_contact_pairs = 1051\n", + "N_noncontact_cell_pairs = 1051\n", + "N_contact_pairs = 1051\n", + "N_noncontact_cell_pairs = 1051\n" + ] + }, + { + "name": "stderr", + "output_type": "stream", + "text": [ + ":89: RuntimeWarning: divide by zero encountered in divide\n", + ":89: RuntimeWarning: invalid value encountered in divide\n", + ":89: RuntimeWarning: divide by zero encountered in divide\n", + ":89: RuntimeWarning: invalid value encountered in divide\n", + ":89: RuntimeWarning: divide by zero encountered in divide\n", + ":89: RuntimeWarning: invalid value encountered in divide\n" + ] + }, + { + "name": "stdout", + "output_type": "stream", + "text": [ + "BAM NN Ependymal NN\n", + "N_contact_pairs = 98\n", + "N_noncontact_cell_pairs = 98\n", + "N_contact_pairs = 98\n", + "N_noncontact_cell_pairs = 98\n", + "CBX MLI Megf11 Gaba DCO UBC Glut\n", + "N_contact_pairs = 1105\n", + "N_noncontact_cell_pairs = 1105\n" + ] + }, + { + "name": "stderr", + "output_type": "stream", + "text": [ + ":89: RuntimeWarning: divide by zero encountered in divide\n", + ":89: RuntimeWarning: invalid value encountered in divide\n" + ] + }, + { + "name": "stdout", + "output_type": "stream", + "text": [ + "N_contact_pairs = 1105\n", + "N_noncontact_cell_pairs = 1105\n" + ] + }, + { + "name": "stderr", + "output_type": "stream", + "text": [ + ":89: RuntimeWarning: divide by zero encountered in divide\n", + ":89: RuntimeWarning: invalid value encountered in divide\n", + ":89: RuntimeWarning: divide by zero encountered in divide\n", + ":89: RuntimeWarning: invalid value encountered in divide\n", + ":89: RuntimeWarning: divide by zero encountered in divide\n", + ":89: RuntimeWarning: invalid value encountered in divide\n" + ] + }, + { + "name": "stdout", + "output_type": "stream", + "text": [ + "DCO UBC Glut Ependymal NN\n", + "N_contact_pairs = 94\n", + "N_noncontact_cell_pairs = 94\n", + "N_contact_pairs = 94\n", + "N_noncontact_cell_pairs = 94\n", + "Endo NN OPC NN\n", + "N_contact_pairs = 2320\n", + "N_noncontact_cell_pairs = 2320\n" + ] + }, + { + "name": "stderr", + "output_type": "stream", + "text": [ + ":89: RuntimeWarning: divide by zero encountered in divide\n", + ":89: RuntimeWarning: invalid value encountered in divide\n" + ] + }, + { + "name": "stdout", + "output_type": "stream", + "text": [ + "N_contact_pairs = 2320\n", + "N_noncontact_cell_pairs = 2320\n", + "DCO UBC Glut Endo NN\n" + ] + }, + { + "name": "stderr", + "output_type": "stream", + "text": [ + ":89: RuntimeWarning: divide by zero encountered in divide\n", + ":89: RuntimeWarning: invalid value encountered in divide\n" + ] + }, + { + "name": "stdout", + "output_type": "stream", + "text": [ + "N_contact_pairs = 861\n", + "N_noncontact_cell_pairs = 861\n" + ] + }, + { + "name": "stderr", + "output_type": "stream", + "text": [ + ":89: RuntimeWarning: divide by zero encountered in divide\n", + ":89: RuntimeWarning: invalid value encountered in divide\n" + ] + }, + { + "name": "stdout", + "output_type": "stream", + "text": [ + "N_contact_pairs = 861\n", + "N_noncontact_cell_pairs = 861\n", + "CBN Dmbx1 Gaba Peri NN\n", + "N_contact_pairs = 173\n", + "N_noncontact_cell_pairs = 173\n" + ] + }, + { + "name": "stderr", + "output_type": "stream", + "text": [ + ":89: RuntimeWarning: divide by zero encountered in divide\n", + ":89: RuntimeWarning: invalid value encountered in divide\n", + ":89: RuntimeWarning: divide by zero encountered in divide\n", + ":89: RuntimeWarning: invalid value encountered in divide\n", + ":89: RuntimeWarning: divide by zero encountered in divide\n", + ":89: RuntimeWarning: invalid value encountered in divide\n", + ":89: RuntimeWarning: divide by zero encountered in divide\n", + ":89: RuntimeWarning: invalid value encountered in divide\n", + ":89: RuntimeWarning: divide by zero encountered in divide\n", + ":89: RuntimeWarning: invalid value encountered in divide\n" + ] + }, + { + "name": "stdout", + "output_type": "stream", + "text": [ + "N_contact_pairs = 173\n", + "N_noncontact_cell_pairs = 173\n", + "Astro-CB NN BAM NN\n", + "N_contact_pairs = 54\n", + "N_noncontact_cell_pairs = 54\n", + "N_contact_pairs = 54\n", + "N_noncontact_cell_pairs = 54\n", + "DCO UBC Glut Oligo NN\n", + "N_contact_pairs = 557\n", + "N_noncontact_cell_pairs = 557\n" + ] + }, + { + "name": "stderr", + "output_type": "stream", + "text": [ + ":89: RuntimeWarning: divide by zero encountered in divide\n", + ":89: RuntimeWarning: invalid value encountered in divide\n" + ] + }, + { + "name": "stdout", + "output_type": "stream", + "text": [ + "N_contact_pairs = 557\n", + "N_noncontact_cell_pairs = 557\n", + "Astro-CB NN VLMC NN\n", + "N_contact_pairs = 186\n", + "N_noncontact_cell_pairs = 186\n" + ] + }, + { + "name": "stderr", + "output_type": "stream", + "text": [ + ":89: RuntimeWarning: divide by zero encountered in divide\n", + ":89: RuntimeWarning: invalid value encountered in divide\n", + ":89: RuntimeWarning: divide by zero encountered in divide\n", + ":89: RuntimeWarning: invalid value encountered in divide\n" + ] + }, + { + "name": "stdout", + "output_type": "stream", + "text": [ + "N_contact_pairs = 186\n", + "N_noncontact_cell_pairs = 186\n", + "CBX MLI Megf11 Gaba Microglia NN\n" + ] + }, + { + "name": "stderr", + "output_type": "stream", + "text": [ + ":89: RuntimeWarning: divide by zero encountered in divide\n", + ":89: RuntimeWarning: invalid value encountered in divide\n" + ] + }, + { + "name": "stdout", + "output_type": "stream", + "text": [ + "N_contact_pairs = 3022\n", + "N_noncontact_cell_pairs = 3022\n" + ] + }, + { + "name": "stderr", + "output_type": "stream", + "text": [ + ":89: RuntimeWarning: divide by zero encountered in divide\n", + ":89: RuntimeWarning: invalid value encountered in divide\n" + ] + }, + { + "name": "stdout", + "output_type": "stream", + "text": [ + "N_contact_pairs = 3022\n", + "N_noncontact_cell_pairs = 3022\n" + ] + }, + { + "name": "stderr", + "output_type": "stream", + "text": [ + ":89: RuntimeWarning: divide by zero encountered in divide\n", + ":89: RuntimeWarning: invalid value encountered in divide\n", + ":89: RuntimeWarning: divide by zero encountered in divide\n", + ":89: RuntimeWarning: invalid value encountered in divide\n", + ":89: RuntimeWarning: divide by zero encountered in divide\n", + ":89: RuntimeWarning: invalid value encountered in divide\n" + ] + }, + { + "name": "stdout", + "output_type": "stream", + "text": [ + "BAM NN Microglia NN\n", + "N_contact_pairs = 92\n", + "N_noncontact_cell_pairs = 92\n", + "N_contact_pairs = 92\n", + "N_noncontact_cell_pairs = 92\n", + "BAM NN Bergmann NN\n", + "N_contact_pairs = 223\n", + "N_noncontact_cell_pairs = 223\n" + ] + }, + { + "name": "stderr", + "output_type": "stream", + "text": [ + ":89: RuntimeWarning: divide by zero encountered in divide\n", + ":89: RuntimeWarning: invalid value encountered in divide\n" + ] + }, + { + "name": "stdout", + "output_type": "stream", + "text": [ + "N_contact_pairs = 223\n", + "N_noncontact_cell_pairs = 223\n", + "CBX Purkinje Gaba Endo NN\n" + ] + }, + { + "name": "stderr", + "output_type": "stream", + "text": [ + ":89: RuntimeWarning: divide by zero encountered in divide\n", + ":89: RuntimeWarning: invalid value encountered in divide\n" + ] + }, + { + "name": "stdout", + "output_type": "stream", + "text": [ + "N_contact_pairs = 1968\n", + "N_noncontact_cell_pairs = 1968\n" + ] + }, + { + "name": "stderr", + "output_type": "stream", + "text": [ + ":89: RuntimeWarning: divide by zero encountered in divide\n", + ":89: RuntimeWarning: invalid value encountered in divide\n" + ] + }, + { + "name": "stdout", + "output_type": "stream", + "text": [ + "N_contact_pairs = 1968\n", + "N_noncontact_cell_pairs = 1968\n", + "BAM NN Oligo NN\n" + ] + }, + { + "name": "stderr", + "output_type": "stream", + "text": [ + ":89: RuntimeWarning: divide by zero encountered in divide\n", + ":89: RuntimeWarning: invalid value encountered in divide\n" + ] + }, + { + "name": "stdout", + "output_type": "stream", + "text": [ + "N_contact_pairs = 373\n", + "N_noncontact_cell_pairs = 373\n" + ] + }, + { + "name": "stderr", + "output_type": "stream", + "text": [ + ":89: RuntimeWarning: divide by zero encountered in divide\n", + ":89: RuntimeWarning: invalid value encountered in divide\n" + ] + }, + { + "name": "stdout", + "output_type": "stream", + "text": [ + "N_contact_pairs = 373\n", + "N_noncontact_cell_pairs = 373\n", + "CHOR NN Peri NN\n", + "N_contact_pairs = 204\n", + "N_noncontact_cell_pairs = 204\n", + "N_contact_pairs = 204\n", + "N_noncontact_cell_pairs = 204\n" + ] + }, + { + "name": "stderr", + "output_type": "stream", + "text": [ + ":89: RuntimeWarning: divide by zero encountered in divide\n", + ":89: RuntimeWarning: invalid value encountered in divide\n", + ":89: RuntimeWarning: divide by zero encountered in divide\n", + ":89: RuntimeWarning: invalid value encountered in divide\n", + ":89: RuntimeWarning: divide by zero encountered in divide\n", + ":89: RuntimeWarning: invalid value encountered in divide\n", + ":89: RuntimeWarning: divide by zero encountered in divide\n", + ":89: RuntimeWarning: invalid value encountered in divide\n" + ] + }, + { + "name": "stdout", + "output_type": "stream", + "text": [ + "VCO Mafa Meis2 Glut VCO Mafa Meis2 Glut\n", + "N_contact_pairs = 358\n", + "N_noncontact_cell_pairs = 358\n", + "Astro-CB NN Peri NN\n", + "N_contact_pairs = 141\n", + "N_noncontact_cell_pairs = 141\n", + "N_contact_pairs = 141\n", + "N_noncontact_cell_pairs = 141\n", + "CB Granule Glut DCO Il22 Gly-Gaba\n" + ] + }, + { + "name": "stderr", + "output_type": "stream", + "text": [ + ":89: RuntimeWarning: divide by zero encountered in divide\n", + ":89: RuntimeWarning: invalid value encountered in divide\n", + ":89: RuntimeWarning: divide by zero encountered in divide\n", + ":89: RuntimeWarning: invalid value encountered in divide\n" + ] + }, + { + "name": "stdout", + "output_type": "stream", + "text": [ + "N_contact_pairs = 660\n", + "N_noncontact_cell_pairs = 660\n" + ] + }, + { + "name": "stderr", + "output_type": "stream", + "text": [ + ":89: RuntimeWarning: divide by zero encountered in divide\n", + ":89: RuntimeWarning: invalid value encountered in divide\n" + ] + }, + { + "name": "stdout", + "output_type": "stream", + "text": [ + "N_contact_pairs = 660\n", + "N_noncontact_cell_pairs = 660\n" + ] + }, + { + "name": "stderr", + "output_type": "stream", + "text": [ + ":89: RuntimeWarning: divide by zero encountered in divide\n", + ":89: RuntimeWarning: invalid value encountered in divide\n" + ] + }, + { + "name": "stdout", + "output_type": "stream", + "text": [ + "DCO Il22 Gly-Gaba Endo NN\n", + "N_contact_pairs = 239\n", + "N_noncontact_cell_pairs = 239\n" + ] + }, + { + "name": "stderr", + "output_type": "stream", + "text": [ + ":89: RuntimeWarning: divide by zero encountered in divide\n", + ":89: RuntimeWarning: invalid value encountered in divide\n" + ] + }, + { + "name": "stdout", + "output_type": "stream", + "text": [ + "N_contact_pairs = 239\n", + "N_noncontact_cell_pairs = 239\n", + "CBN Neurod2 Pvalb Glut Endo NN\n", + "N_contact_pairs = 312\n", + "N_noncontact_cell_pairs = 312\n" + ] + }, + { + "name": "stderr", + "output_type": "stream", + "text": [ + ":89: RuntimeWarning: divide by zero encountered in divide\n", + ":89: RuntimeWarning: invalid value encountered in divide\n", + ":89: RuntimeWarning: divide by zero encountered in divide\n", + ":89: RuntimeWarning: invalid value encountered in divide\n" + ] + }, + { + "name": "stdout", + "output_type": "stream", + "text": [ + "N_contact_pairs = 312\n", + "N_noncontact_cell_pairs = 312\n", + "CBX MLI Cdh22 Gaba Microglia NN\n" + ] + }, + { + "name": "stderr", + "output_type": "stream", + "text": [ + ":89: RuntimeWarning: divide by zero encountered in divide\n", + ":89: RuntimeWarning: invalid value encountered in divide\n", + ":89: RuntimeWarning: divide by zero encountered in divide\n", + ":89: RuntimeWarning: invalid value encountered in divide\n" + ] + }, + { + "name": "stdout", + "output_type": "stream", + "text": [ + "N_contact_pairs = 808\n", + "N_noncontact_cell_pairs = 808\n", + "N_contact_pairs = 808\n", + "N_noncontact_cell_pairs = 808\n" + ] + }, + { + "name": "stderr", + "output_type": "stream", + "text": [ + ":89: RuntimeWarning: divide by zero encountered in divide\n", + ":89: RuntimeWarning: invalid value encountered in divide\n" + ] + }, + { + "name": "stdout", + "output_type": "stream", + "text": [ + "CB PLI Gly-Gaba Endo NN\n", + "N_contact_pairs = 1103\n", + "N_noncontact_cell_pairs = 1103\n" + ] + }, + { + "name": "stderr", + "output_type": "stream", + "text": [ + ":89: RuntimeWarning: divide by zero encountered in divide\n", + ":89: RuntimeWarning: invalid value encountered in divide\n" + ] + }, + { + "name": "stdout", + "output_type": "stream", + "text": [ + "N_contact_pairs = 1103\n", + "N_noncontact_cell_pairs = 1103\n", + "CBN Dmbx1 Gaba Endo NN\n" + ] + }, + { + "name": "stderr", + "output_type": "stream", + "text": [ + ":89: RuntimeWarning: divide by zero encountered in divide\n", + ":89: RuntimeWarning: invalid value encountered in divide\n" + ] + }, + { + "name": "stdout", + "output_type": "stream", + "text": [ + "N_contact_pairs = 840\n", + "N_noncontact_cell_pairs = 840\n" + ] + }, + { + "name": "stderr", + "output_type": "stream", + "text": [ + ":89: RuntimeWarning: divide by zero encountered in divide\n", + ":89: RuntimeWarning: invalid value encountered in divide\n" + ] + }, + { + "name": "stdout", + "output_type": "stream", + "text": [ + "N_contact_pairs = 840\n", + "N_noncontact_cell_pairs = 840\n", + "CB PLI Gly-Gaba Oligo NN\n" + ] + }, + { + "name": "stderr", + "output_type": "stream", + "text": [ + ":89: RuntimeWarning: divide by zero encountered in divide\n", + ":89: RuntimeWarning: invalid value encountered in divide\n" + ] + }, + { + "name": "stdout", + "output_type": "stream", + "text": [ + "N_contact_pairs = 991\n", + "N_noncontact_cell_pairs = 991\n" + ] + }, + { + "name": "stderr", + "output_type": "stream", + "text": [ + ":89: RuntimeWarning: divide by zero encountered in divide\n", + ":89: RuntimeWarning: invalid value encountered in divide\n" + ] + }, + { + "name": "stdout", + "output_type": "stream", + "text": [ + "N_contact_pairs = 991\n", + "N_noncontact_cell_pairs = 991\n", + "CB PLI Gly-Gaba Peri NN\n", + "N_contact_pairs = 196\n", + "N_noncontact_cell_pairs = 196\n" + ] + }, + { + "name": "stderr", + "output_type": "stream", + "text": [ + ":89: RuntimeWarning: divide by zero encountered in divide\n", + ":89: RuntimeWarning: invalid value encountered in divide\n", + ":89: RuntimeWarning: divide by zero encountered in divide\n", + ":89: RuntimeWarning: invalid value encountered in divide\n", + ":89: RuntimeWarning: divide by zero encountered in divide\n", + ":89: RuntimeWarning: invalid value encountered in divide\n", + ":89: RuntimeWarning: divide by zero encountered in divide\n", + ":89: RuntimeWarning: invalid value encountered in divide\n" + ] + }, + { + "name": "stdout", + "output_type": "stream", + "text": [ + "N_contact_pairs = 196\n", + "N_noncontact_cell_pairs = 196\n", + "CHOR NN Microglia NN\n", + "N_contact_pairs = 171\n", + "N_noncontact_cell_pairs = 171\n", + "N_contact_pairs = 171\n", + "N_noncontact_cell_pairs = 171\n", + "CB PLI Gly-Gaba CBX Golgi Gly-Gaba\n", + "N_contact_pairs = 56\n", + "N_noncontact_cell_pairs = 56\n", + "N_contact_pairs = 56\n", + "N_noncontact_cell_pairs = 56\n", + "CBX Purkinje Gaba Peri NN\n" + ] + }, + { + "name": "stderr", + "output_type": "stream", + "text": [ + ":89: RuntimeWarning: divide by zero encountered in divide\n", + ":89: RuntimeWarning: invalid value encountered in divide\n", + ":89: RuntimeWarning: divide by zero encountered in divide\n", + ":89: RuntimeWarning: invalid value encountered in divide\n", + ":89: RuntimeWarning: divide by zero encountered in divide\n", + ":89: RuntimeWarning: invalid value encountered in divide\n", + ":89: RuntimeWarning: divide by zero encountered in divide\n", + ":89: RuntimeWarning: invalid value encountered in divide\n" + ] + }, + { + "name": "stdout", + "output_type": "stream", + "text": [ + "N_contact_pairs = 329\n", + "N_noncontact_cell_pairs = 329\n", + "N_contact_pairs = 329\n", + "N_noncontact_cell_pairs = 329\n", + "CBN Neurod2 Pvalb Glut Oligo NN\n", + "N_contact_pairs = 799\n", + "N_noncontact_cell_pairs = 799\n" + ] + }, + { + "name": "stderr", + "output_type": "stream", + "text": [ + ":89: RuntimeWarning: divide by zero encountered in divide\n", + ":89: RuntimeWarning: invalid value encountered in divide\n", + ":89: RuntimeWarning: divide by zero encountered in divide\n", + ":89: RuntimeWarning: invalid value encountered in divide\n" + ] + }, + { + "name": "stdout", + "output_type": "stream", + "text": [ + "N_contact_pairs = 799\n", + "N_noncontact_cell_pairs = 799\n", + "DCO Il22 Gly-Gaba VCO Mafa Meis2 Glut\n", + "N_contact_pairs = 131\n", + "N_noncontact_cell_pairs = 131\n", + "N_contact_pairs = 131\n", + "N_noncontact_cell_pairs = 131\n", + "DCO UBC Glut OPC NN\n", + "N_contact_pairs = 103\n", + "N_noncontact_cell_pairs = 103\n" + ] + }, + { + "name": "stderr", + "output_type": "stream", + "text": [ + ":89: RuntimeWarning: divide by zero encountered in divide\n", + ":89: RuntimeWarning: invalid value encountered in divide\n", + ":89: RuntimeWarning: divide by zero encountered in divide\n", + ":89: RuntimeWarning: invalid value encountered in divide\n", + ":89: RuntimeWarning: divide by zero encountered in divide\n", + ":89: RuntimeWarning: invalid value encountered in divide\n", + ":89: RuntimeWarning: divide by zero encountered in divide\n", + ":89: RuntimeWarning: invalid value encountered in divide\n", + ":89: RuntimeWarning: divide by zero encountered in divide\n", + ":89: RuntimeWarning: invalid value encountered in divide\n" + ] + }, + { + "name": "stdout", + "output_type": "stream", + "text": [ + "N_contact_pairs = 103\n", + "N_noncontact_cell_pairs = 103\n", + "Astro-CB NN CB PLI Gly-Gaba\n", + "N_contact_pairs = 73\n", + "N_noncontact_cell_pairs = 73\n", + "N_contact_pairs = 73\n", + "N_noncontact_cell_pairs = 73\n", + "CBX MLI Cdh22 Gaba DCO UBC Glut\n", + "N_contact_pairs = 287\n", + "N_noncontact_cell_pairs = 287\n" + ] + }, + { + "name": "stderr", + "output_type": "stream", + "text": [ + ":89: RuntimeWarning: divide by zero encountered in divide\n", + ":89: RuntimeWarning: invalid value encountered in divide\n", + ":89: RuntimeWarning: divide by zero encountered in divide\n", + ":89: RuntimeWarning: invalid value encountered in divide\n", + ":89: RuntimeWarning: divide by zero encountered in divide\n", + ":89: RuntimeWarning: invalid value encountered in divide\n" + ] + }, + { + "name": "stdout", + "output_type": "stream", + "text": [ + "N_contact_pairs = 287\n", + "N_noncontact_cell_pairs = 287\n", + "CBN Neurod2 Pvalb Glut CBN Neurod2 Pvalb Glut\n", + "N_contact_pairs = 50\n", + "N_noncontact_cell_pairs = 50\n", + "CHOR NN Lymphoid NN\n", + "N_contact_pairs = 57\n", + "N_noncontact_cell_pairs = 57\n", + "N_contact_pairs = 57\n", + "N_noncontact_cell_pairs = 57\n", + "DCO Il22 Gly-Gaba DCO Il22 Gly-Gaba\n", + "N_contact_pairs = 73\n", + "N_noncontact_cell_pairs = 73\n", + "DCO Il22 Gly-Gaba Oligo NN\n" + ] + }, + { + "name": "stderr", + "output_type": "stream", + "text": [ + ":89: RuntimeWarning: divide by zero encountered in divide\n", + ":89: RuntimeWarning: invalid value encountered in divide\n", + ":89: RuntimeWarning: divide by zero encountered in divide\n", + ":89: RuntimeWarning: invalid value encountered in divide\n", + ":89: RuntimeWarning: divide by zero encountered in divide\n", + ":89: RuntimeWarning: invalid value encountered in divide\n", + ":89: RuntimeWarning: divide by zero encountered in divide\n", + ":89: RuntimeWarning: invalid value encountered in divide\n", + ":89: RuntimeWarning: divide by zero encountered in divide\n", + ":89: RuntimeWarning: invalid value encountered in divide\n" + ] + }, + { + "name": "stdout", + "output_type": "stream", + "text": [ + "N_contact_pairs = 304\n", + "N_noncontact_cell_pairs = 304\n" + ] + }, + { + "name": "stderr", + "output_type": "stream", + "text": [ + ":89: RuntimeWarning: divide by zero encountered in divide\n", + ":89: RuntimeWarning: invalid value encountered in divide\n" + ] + }, + { + "name": "stdout", + "output_type": "stream", + "text": [ + "N_contact_pairs = 304\n", + "N_noncontact_cell_pairs = 304\n", + "Astro-CB NN CBX Golgi Gly-Gaba\n", + "N_contact_pairs = 65\n", + "N_noncontact_cell_pairs = 65\n", + "N_contact_pairs = 65\n", + "N_noncontact_cell_pairs = 65\n" + ] + }, + { + "name": "stderr", + "output_type": "stream", + "text": [ + ":89: RuntimeWarning: divide by zero encountered in divide\n", + ":89: RuntimeWarning: invalid value encountered in divide\n", + ":89: RuntimeWarning: divide by zero encountered in divide\n", + ":89: RuntimeWarning: invalid value encountered in divide\n", + ":89: RuntimeWarning: divide by zero encountered in divide\n", + ":89: RuntimeWarning: invalid value encountered in divide\n" + ] + }, + { + "name": "stdout", + "output_type": "stream", + "text": [ + "Cortical_subplate\n" + ] + }, + { + "name": "stderr", + "output_type": "stream", + "text": [ + ":25: ImplicitModificationWarning: Trying to modify attribute `.obs` of view, initializing view as actual.\n", + ":28: ImplicitModificationWarning: Trying to modify attribute `.obs` of view, initializing view as actual.\n" + ] + }, + { + "name": "stdout", + "output_type": "stream", + "text": [ + "STR-PAL Chst9 Gaba STR-PAL Chst9 Gaba\n", + "N_contact_pairs = 7721\n", + "N_noncontact_cell_pairs = 7721\n" + ] + }, + { + "name": "stderr", + "output_type": "stream", + "text": [ + ":89: RuntimeWarning: divide by zero encountered in divide\n", + ":89: RuntimeWarning: invalid value encountered in divide\n", + ":89: RuntimeWarning: divide by zero encountered in divide\n", + ":89: RuntimeWarning: invalid value encountered in divide\n", + ":89: RuntimeWarning: divide by zero encountered in divide\n", + ":89: RuntimeWarning: invalid value encountered in divide\n", + ":89: RuntimeWarning: divide by zero encountered in divide\n", + ":89: RuntimeWarning: invalid value encountered in divide\n" + ] + }, + { + "name": "stdout", + "output_type": "stream", + "text": [ + "SMC NN SMC NN\n", + "N_contact_pairs = 295\n", + "N_noncontact_cell_pairs = 295\n", + "SMC NN VLMC NN\n", + "N_contact_pairs = 259\n", + "N_noncontact_cell_pairs = 259\n", + "N_contact_pairs = 259\n", + "N_noncontact_cell_pairs = 259\n", + "Endo NN Endo NN\n", + "N_contact_pairs = 3265\n", + "N_noncontact_cell_pairs = 3265\n" + ] + }, + { + "name": "stderr", + "output_type": "stream", + "text": [ + ":89: RuntimeWarning: divide by zero encountered in divide\n", + ":89: RuntimeWarning: invalid value encountered in divide\n", + ":89: RuntimeWarning: divide by zero encountered in divide\n", + ":89: RuntimeWarning: invalid value encountered in divide\n" + ] + }, + { + "name": "stdout", + "output_type": "stream", + "text": [ + "Endo NN SMC NN\n", + "N_contact_pairs = 585\n", + "N_noncontact_cell_pairs = 585\n", + "N_contact_pairs = 585\n", + "N_noncontact_cell_pairs = 585\n" + ] + }, + { + "name": "stderr", + "output_type": "stream", + "text": [ + ":89: RuntimeWarning: divide by zero encountered in divide\n", + ":89: RuntimeWarning: invalid value encountered in divide\n", + ":89: RuntimeWarning: divide by zero encountered in divide\n", + ":89: RuntimeWarning: invalid value encountered in divide\n" + ] + }, + { + "name": "stdout", + "output_type": "stream", + "text": [ + "Endo NN Peri NN\n", + "N_contact_pairs = 1363\n", + "N_noncontact_cell_pairs = 1363\n", + "N_contact_pairs = 1363\n", + "N_noncontact_cell_pairs = 1363\n", + "CLA-EPd-CTX Car3 Glut CLA-EPd-CTX Car3 Glut\n", + "N_contact_pairs = 2249\n", + "N_noncontact_cell_pairs = 2249\n", + "Endo NN VLMC NN\n" + ] + }, + { + "name": "stderr", + "output_type": "stream", + "text": [ + ":89: RuntimeWarning: divide by zero encountered in divide\n", + ":89: RuntimeWarning: invalid value encountered in divide\n", + ":89: RuntimeWarning: divide by zero encountered in divide\n", + ":89: RuntimeWarning: invalid value encountered in divide\n" + ] + }, + { + "name": "stdout", + "output_type": "stream", + "text": [ + "N_contact_pairs = 459\n", + "N_noncontact_cell_pairs = 459\n", + "N_contact_pairs = 459\n", + "N_noncontact_cell_pairs = 459\n", + "Oligo NN Oligo NN\n" + ] + }, + { + "name": "stderr", + "output_type": "stream", + "text": [ + ":89: RuntimeWarning: divide by zero encountered in divide\n", + ":89: RuntimeWarning: invalid value encountered in divide\n", + ":89: RuntimeWarning: divide by zero encountered in divide\n", + ":89: RuntimeWarning: invalid value encountered in divide\n" + ] + }, + { + "name": "stdout", + "output_type": "stream", + "text": [ + "N_contact_pairs = 1933\n", + "N_noncontact_cell_pairs = 1933\n", + "VLMC NN VLMC NN\n", + "N_contact_pairs = 114\n", + "N_noncontact_cell_pairs = 114\n", + "ENTmv-PA-COAp Glut ENTmv-PA-COAp Glut\n", + "N_contact_pairs = 838\n", + "N_noncontact_cell_pairs = 838\n", + "Ependymal NN Ependymal NN\n", + "N_contact_pairs = 122\n", + "N_noncontact_cell_pairs = 36\n", + "LA-BLA-BMA-PA Glut LA-BLA-BMA-PA Glut\n" + ] + }, + { + "name": "stderr", + "output_type": "stream", + "text": [ + ":89: RuntimeWarning: divide by zero encountered in divide\n", + ":89: RuntimeWarning: invalid value encountered in divide\n", + ":89: RuntimeWarning: divide by zero encountered in divide\n", + ":89: RuntimeWarning: invalid value encountered in divide\n", + ":89: RuntimeWarning: divide by zero encountered in divide\n", + ":89: RuntimeWarning: invalid value encountered in divide\n", + ":89: RuntimeWarning: divide by zero encountered in divide\n", + ":89: RuntimeWarning: invalid value encountered in divide\n" + ] + }, + { + "name": "stdout", + "output_type": "stream", + "text": [ + "N_contact_pairs = 14907\n", + "N_noncontact_cell_pairs = 14907\n" + ] + }, + { + "name": "stderr", + "output_type": "stream", + "text": [ + ":89: RuntimeWarning: divide by zero encountered in divide\n", + ":89: RuntimeWarning: invalid value encountered in divide\n", + ":89: RuntimeWarning: divide by zero encountered in divide\n", + ":89: RuntimeWarning: invalid value encountered in divide\n", + ":89: RuntimeWarning: divide by zero encountered in divide\n", + ":89: RuntimeWarning: invalid value encountered in divide\n" + ] + }, + { + "name": "stdout", + "output_type": "stream", + "text": [ + "BAM NN SMC NN\n", + "N_contact_pairs = 71\n", + "N_noncontact_cell_pairs = 71\n", + "N_contact_pairs = 71\n", + "N_noncontact_cell_pairs = 71\n", + "BAM NN Endo NN\n", + "N_contact_pairs = 219\n", + "N_noncontact_cell_pairs = 219\n" + ] + }, + { + "name": "stderr", + "output_type": "stream", + "text": [ + ":89: RuntimeWarning: divide by zero encountered in divide\n", + ":89: RuntimeWarning: invalid value encountered in divide\n", + ":89: RuntimeWarning: divide by zero encountered in divide\n", + ":89: RuntimeWarning: invalid value encountered in divide\n" + ] + }, + { + "name": "stdout", + "output_type": "stream", + "text": [ + "N_contact_pairs = 219\n", + "N_noncontact_cell_pairs = 219\n", + "IT EP-CLA Glut IT EP-CLA Glut\n", + "N_contact_pairs = 2863\n", + "N_noncontact_cell_pairs = 2863\n", + "BAM NN VLMC NN\n", + "N_contact_pairs = 66\n", + "N_noncontact_cell_pairs = 66\n" + ] + }, + { + "name": "stderr", + "output_type": "stream", + "text": [ + ":89: RuntimeWarning: divide by zero encountered in divide\n", + ":89: RuntimeWarning: invalid value encountered in divide\n", + ":89: RuntimeWarning: divide by zero encountered in divide\n", + ":89: RuntimeWarning: invalid value encountered in divide\n", + ":89: RuntimeWarning: divide by zero encountered in divide\n", + ":89: RuntimeWarning: invalid value encountered in divide\n" + ] + }, + { + "name": "stdout", + "output_type": "stream", + "text": [ + "N_contact_pairs = 66\n", + "N_noncontact_cell_pairs = 66\n", + "Astro-TE NN Astro-TE NN\n", + "N_contact_pairs = 4721\n", + "N_noncontact_cell_pairs = 4721\n" + ] + }, + { + "name": "stderr", + "output_type": "stream", + "text": [ + ":89: RuntimeWarning: divide by zero encountered in divide\n", + ":89: RuntimeWarning: invalid value encountered in divide\n" + ] + }, + { + "name": "stdout", + "output_type": "stream", + "text": [ + "Astro-TE NN Oligo NN\n", + "N_contact_pairs = 3512\n", + "N_noncontact_cell_pairs = 3512\n" + ] + }, + { + "name": "stderr", + "output_type": "stream", + "text": [ + ":89: RuntimeWarning: divide by zero encountered in divide\n", + ":89: RuntimeWarning: invalid value encountered in divide\n" + ] + }, + { + "name": "stdout", + "output_type": "stream", + "text": [ + "N_contact_pairs = 3512\n", + "N_noncontact_cell_pairs = 3512\n", + "Endo NN Microglia NN\n" + ] + }, + { + "name": "stderr", + "output_type": "stream", + "text": [ + ":89: RuntimeWarning: divide by zero encountered in divide\n", + ":89: RuntimeWarning: invalid value encountered in divide\n" + ] + }, + { + "name": "stdout", + "output_type": "stream", + "text": [ + "N_contact_pairs = 2258\n", + "N_noncontact_cell_pairs = 2258\n", + "N_contact_pairs = 2258\n", + "N_noncontact_cell_pairs = 2258\n" + ] + }, + { + "name": "stderr", + "output_type": "stream", + "text": [ + ":89: RuntimeWarning: divide by zero encountered in divide\n", + ":89: RuntimeWarning: invalid value encountered in divide\n", + ":89: RuntimeWarning: divide by zero encountered in divide\n", + ":89: RuntimeWarning: invalid value encountered in divide\n" + ] + }, + { + "name": "stdout", + "output_type": "stream", + "text": [ + "Endo NN Oligo NN\n", + "N_contact_pairs = 2634\n", + "N_noncontact_cell_pairs = 2634\n" + ] + }, + { + "name": "stderr", + "output_type": "stream", + "text": [ + ":89: RuntimeWarning: divide by zero encountered in divide\n", + ":89: RuntimeWarning: invalid value encountered in divide\n" + ] + }, + { + "name": "stdout", + "output_type": "stream", + "text": [ + "N_contact_pairs = 2634\n", + "N_noncontact_cell_pairs = 2634\n", + "Sncg Gaba Sncg Gaba\n", + "N_contact_pairs = 43\n", + "N_noncontact_cell_pairs = 43\n", + "Astro-TE NN Endo NN\n" + ] + }, + { + "name": "stderr", + "output_type": "stream", + "text": [ + ":89: RuntimeWarning: divide by zero encountered in divide\n", + ":89: RuntimeWarning: invalid value encountered in divide\n", + ":89: RuntimeWarning: divide by zero encountered in divide\n", + ":89: RuntimeWarning: invalid value encountered in divide\n" + ] + }, + { + "name": "stdout", + "output_type": "stream", + "text": [ + "N_contact_pairs = 4881\n", + "N_noncontact_cell_pairs = 4881\n" + ] + }, + { + "name": "stderr", + "output_type": "stream", + "text": [ + ":89: RuntimeWarning: divide by zero encountered in divide\n", + ":89: RuntimeWarning: invalid value encountered in divide\n" + ] + }, + { + "name": "stdout", + "output_type": "stream", + "text": [ + "N_contact_pairs = 4881\n", + "N_noncontact_cell_pairs = 4881\n", + "Sst Gaba Sst Gaba\n" + ] + }, + { + "name": "stderr", + "output_type": "stream", + "text": [ + ":89: RuntimeWarning: divide by zero encountered in divide\n", + ":89: RuntimeWarning: invalid value encountered in divide\n", + ":89: RuntimeWarning: divide by zero encountered in divide\n", + ":89: RuntimeWarning: invalid value encountered in divide\n" + ] + }, + { + "name": "stdout", + "output_type": "stream", + "text": [ + "N_contact_pairs = 312\n", + "N_noncontact_cell_pairs = 312\n", + "Astro-TE NN Microglia NN\n", + "N_contact_pairs = 2626\n", + "N_noncontact_cell_pairs = 2626\n" + ] + }, + { + "name": "stderr", + "output_type": "stream", + "text": [ + ":89: RuntimeWarning: divide by zero encountered in divide\n", + ":89: RuntimeWarning: invalid value encountered in divide\n" + ] + }, + { + "name": "stdout", + "output_type": "stream", + "text": [ + "N_contact_pairs = 2626\n", + "N_noncontact_cell_pairs = 2626\n", + "MEA-COA-BMA Ccdc42 Glut MEA-COA-BMA Ccdc42 Glut\n", + "N_contact_pairs = 1860\n", + "N_noncontact_cell_pairs = 1860\n", + "COAp Grxcr2 Glut COAp Grxcr2 Glut\n", + "N_contact_pairs = 234\n", + "N_noncontact_cell_pairs = 234\n", + "Microglia NN Oligo NN\n" + ] + }, + { + "name": "stderr", + "output_type": "stream", + "text": [ + ":89: RuntimeWarning: divide by zero encountered in divide\n", + ":89: RuntimeWarning: invalid value encountered in divide\n", + ":89: RuntimeWarning: divide by zero encountered in divide\n", + ":89: RuntimeWarning: invalid value encountered in divide\n", + ":89: RuntimeWarning: divide by zero encountered in divide\n", + ":89: RuntimeWarning: invalid value encountered in divide\n" + ] + }, + { + "name": "stdout", + "output_type": "stream", + "text": [ + "N_contact_pairs = 1412\n", + "N_noncontact_cell_pairs = 1412\n", + "N_contact_pairs = 1412\n", + "N_noncontact_cell_pairs = 1412\n" + ] + }, + { + "name": "stderr", + "output_type": "stream", + "text": [ + ":89: RuntimeWarning: divide by zero encountered in divide\n", + ":89: RuntimeWarning: invalid value encountered in divide\n", + ":89: RuntimeWarning: divide by zero encountered in divide\n", + ":89: RuntimeWarning: invalid value encountered in divide\n", + ":89: RuntimeWarning: divide by zero encountered in divide\n", + ":89: RuntimeWarning: invalid value encountered in divide\n" + ] + }, + { + "name": "stdout", + "output_type": "stream", + "text": [ + "Peri NN Peri NN\n", + "N_contact_pairs = 102\n", + "N_noncontact_cell_pairs = 102\n", + "Astro-TE NN OPC NN\n", + "N_contact_pairs = 2572\n", + "N_noncontact_cell_pairs = 2572\n" + ] + }, + { + "name": "stderr", + "output_type": "stream", + "text": [ + ":89: RuntimeWarning: divide by zero encountered in divide\n", + ":89: RuntimeWarning: invalid value encountered in divide\n" + ] + }, + { + "name": "stdout", + "output_type": "stream", + "text": [ + "N_contact_pairs = 2572\n", + "N_noncontact_cell_pairs = 2572\n", + "OPC NN OPC NN\n", + "N_contact_pairs = 645\n", + "N_noncontact_cell_pairs = 645\n", + "ENTmv-PA-COAp Glut Endo NN\n" + ] + }, + { + "name": "stderr", + "output_type": "stream", + "text": [ + ":89: RuntimeWarning: divide by zero encountered in divide\n", + ":89: RuntimeWarning: invalid value encountered in divide\n", + ":89: RuntimeWarning: divide by zero encountered in divide\n", + ":89: RuntimeWarning: invalid value encountered in divide\n", + ":89: RuntimeWarning: divide by zero encountered in divide\n", + ":89: RuntimeWarning: invalid value encountered in divide\n" + ] + }, + { + "name": "stdout", + "output_type": "stream", + "text": [ + "N_contact_pairs = 257\n", + "N_noncontact_cell_pairs = 257\n", + "N_contact_pairs = 257\n", + "N_noncontact_cell_pairs = 257\n", + "L6b EPd Glut L6b EPd Glut\n", + "N_contact_pairs = 596\n", + "N_noncontact_cell_pairs = 596\n", + "ENTmv-PA-COAp Glut Lamp5 Lhx6 Gaba\n" + ] + }, + { + "name": "stderr", + "output_type": "stream", + "text": [ + ":89: RuntimeWarning: divide by zero encountered in divide\n", + ":89: RuntimeWarning: invalid value encountered in divide\n", + ":89: RuntimeWarning: divide by zero encountered in divide\n", + ":89: RuntimeWarning: invalid value encountered in divide\n", + ":89: RuntimeWarning: divide by zero encountered in divide\n", + ":89: RuntimeWarning: invalid value encountered in divide\n", + ":89: RuntimeWarning: divide by zero encountered in divide\n", + ":89: RuntimeWarning: invalid value encountered in divide\n", + ":89: RuntimeWarning: divide by zero encountered in divide\n", + ":89: RuntimeWarning: invalid value encountered in divide\n" + ] + }, + { + "name": "stdout", + "output_type": "stream", + "text": [ + "N_contact_pairs = 74\n", + "N_noncontact_cell_pairs = 74\n", + "N_contact_pairs = 74\n", + "N_noncontact_cell_pairs = 74\n", + "MEA Slc17a7 Glut MEA Slc17a7 Glut\n", + "N_contact_pairs = 1280\n", + "N_noncontact_cell_pairs = 1280\n", + "Microglia NN Peri NN\n", + "N_contact_pairs = 394\n", + "N_noncontact_cell_pairs = 394\n" + ] + }, + { + "name": "stderr", + "output_type": "stream", + "text": [ + ":89: RuntimeWarning: divide by zero encountered in divide\n", + ":89: RuntimeWarning: invalid value encountered in divide\n", + ":89: RuntimeWarning: divide by zero encountered in divide\n", + ":89: RuntimeWarning: invalid value encountered in divide\n", + ":89: RuntimeWarning: divide by zero encountered in divide\n", + ":89: RuntimeWarning: invalid value encountered in divide\n" + ] + }, + { + "name": "stdout", + "output_type": "stream", + "text": [ + "N_contact_pairs = 394\n", + "N_noncontact_cell_pairs = 394\n", + "Vip Gaba Vip Gaba\n", + "N_contact_pairs = 110\n", + "N_noncontact_cell_pairs = 110\n", + "Astro-TE NN Sst Gaba\n", + "N_contact_pairs = 1294\n", + "N_noncontact_cell_pairs = 1294\n" + ] + }, + { + "name": "stderr", + "output_type": "stream", + "text": [ + ":89: RuntimeWarning: divide by zero encountered in divide\n", + ":89: RuntimeWarning: invalid value encountered in divide\n", + ":89: RuntimeWarning: divide by zero encountered in divide\n", + ":89: RuntimeWarning: invalid value encountered in divide\n" + ] + }, + { + "name": "stdout", + "output_type": "stream", + "text": [ + "N_contact_pairs = 1294\n", + "N_noncontact_cell_pairs = 1294\n", + "Astro-TE NN CLA-EPd-CTX Car3 Glut\n", + "N_contact_pairs = 971\n", + "N_noncontact_cell_pairs = 971\n" + ] + }, + { + "name": "stderr", + "output_type": "stream", + "text": [ + ":89: RuntimeWarning: divide by zero encountered in divide\n", + ":89: RuntimeWarning: invalid value encountered in divide\n", + ":89: RuntimeWarning: divide by zero encountered in divide\n", + ":89: RuntimeWarning: invalid value encountered in divide\n" + ] + }, + { + "name": "stdout", + "output_type": "stream", + "text": [ + "N_contact_pairs = 971\n", + "N_noncontact_cell_pairs = 971\n", + "Endo NN OPC NN\n", + "N_contact_pairs = 1924\n", + "N_noncontact_cell_pairs = 1924\n" + ] + }, + { + "name": "stderr", + "output_type": "stream", + "text": [ + ":89: RuntimeWarning: divide by zero encountered in divide\n", + ":89: RuntimeWarning: invalid value encountered in divide\n", + ":89: RuntimeWarning: divide by zero encountered in divide\n", + ":89: RuntimeWarning: invalid value encountered in divide\n" + ] + }, + { + "name": "stdout", + "output_type": "stream", + "text": [ + "N_contact_pairs = 1924\n", + "N_noncontact_cell_pairs = 1924\n", + "CLA-EPd-CTX Car3 Glut Sncg Gaba\n", + "N_contact_pairs = 110\n", + "N_noncontact_cell_pairs = 110\n", + "N_contact_pairs = 110\n", + "N_noncontact_cell_pairs = 110\n", + "Astro-TE NN Peri NN\n" + ] + }, + { + "name": "stderr", + "output_type": "stream", + "text": [ + ":89: RuntimeWarning: divide by zero encountered in divide\n", + ":89: RuntimeWarning: invalid value encountered in divide\n", + ":89: RuntimeWarning: divide by zero encountered in divide\n", + ":89: RuntimeWarning: invalid value encountered in divide\n" + ] + }, + { + "name": "stdout", + "output_type": "stream", + "text": [ + "N_contact_pairs = 841\n", + "N_noncontact_cell_pairs = 841\n", + "N_contact_pairs = 841\n", + "N_noncontact_cell_pairs = 841\n" + ] + }, + { + "name": "stderr", + "output_type": "stream", + "text": [ + ":89: RuntimeWarning: divide by zero encountered in divide\n", + ":89: RuntimeWarning: invalid value encountered in divide\n", + ":89: RuntimeWarning: divide by zero encountered in divide\n", + ":89: RuntimeWarning: invalid value encountered in divide\n" + ] + }, + { + "name": "stdout", + "output_type": "stream", + "text": [ + "CLA-EPd-CTX Car3 Glut Endo NN\n", + "N_contact_pairs = 1144\n", + "N_noncontact_cell_pairs = 1144\n" + ] + }, + { + "name": "stderr", + "output_type": "stream", + "text": [ + ":89: RuntimeWarning: divide by zero encountered in divide\n", + ":89: RuntimeWarning: invalid value encountered in divide\n", + ":89: RuntimeWarning: divide by zero encountered in divide\n", + ":89: RuntimeWarning: invalid value encountered in divide\n" + ] + }, + { + "name": "stdout", + "output_type": "stream", + "text": [ + "N_contact_pairs = 1144\n", + "N_noncontact_cell_pairs = 1144\n", + "Astro-TE NN Ependymal NN\n", + "N_contact_pairs = 195\n", + "N_noncontact_cell_pairs = 195\n", + "N_contact_pairs = 195\n", + "N_noncontact_cell_pairs = 195\n" + ] + }, + { + "name": "stderr", + "output_type": "stream", + "text": [ + ":89: RuntimeWarning: divide by zero encountered in divide\n", + ":89: RuntimeWarning: invalid value encountered in divide\n", + ":89: RuntimeWarning: divide by zero encountered in divide\n", + ":89: RuntimeWarning: invalid value encountered in divide\n", + ":89: RuntimeWarning: divide by zero encountered in divide\n", + ":89: RuntimeWarning: invalid value encountered in divide\n", + ":89: RuntimeWarning: divide by zero encountered in divide\n", + ":89: RuntimeWarning: invalid value encountered in divide\n", + ":89: RuntimeWarning: divide by zero encountered in divide\n", + ":89: RuntimeWarning: invalid value encountered in divide\n" + ] + }, + { + "name": "stdout", + "output_type": "stream", + "text": [ + "ENTmv-PA-COAp Glut Vip Gaba\n", + "N_contact_pairs = 113\n", + "N_noncontact_cell_pairs = 113\n", + "N_contact_pairs = 113\n", + "N_noncontact_cell_pairs = 113\n", + "OPC NN Sst Gaba\n", + "N_contact_pairs = 557\n", + "N_noncontact_cell_pairs = 557\n", + "N_contact_pairs = 557\n", + "N_noncontact_cell_pairs = 557\n", + "Microglia NN OPC NN\n", + "N_contact_pairs = 1046\n", + "N_noncontact_cell_pairs = 1046\n" + ] + }, + { + "name": "stderr", + "output_type": "stream", + "text": [ + ":89: RuntimeWarning: divide by zero encountered in divide\n", + ":89: RuntimeWarning: invalid value encountered in divide\n", + ":89: RuntimeWarning: divide by zero encountered in divide\n", + ":89: RuntimeWarning: invalid value encountered in divide\n" + ] + }, + { + "name": "stdout", + "output_type": "stream", + "text": [ + "N_contact_pairs = 1046\n", + "N_noncontact_cell_pairs = 1046\n", + "Oligo NN Peri NN\n", + "N_contact_pairs = 414\n", + "N_noncontact_cell_pairs = 414\n" + ] + }, + { + "name": "stderr", + "output_type": "stream", + "text": [ + ":89: RuntimeWarning: divide by zero encountered in divide\n", + ":89: RuntimeWarning: invalid value encountered in divide\n", + ":89: RuntimeWarning: divide by zero encountered in divide\n", + ":89: RuntimeWarning: invalid value encountered in divide\n" + ] + }, + { + "name": "stdout", + "output_type": "stream", + "text": [ + "N_contact_pairs = 414\n", + "N_noncontact_cell_pairs = 414\n", + "IT EP-CLA Glut OPC NN\n", + "N_contact_pairs = 909\n", + "N_noncontact_cell_pairs = 909\n" + ] + }, + { + "name": "stderr", + "output_type": "stream", + "text": [ + ":89: RuntimeWarning: divide by zero encountered in divide\n", + ":89: RuntimeWarning: invalid value encountered in divide\n", + ":89: RuntimeWarning: divide by zero encountered in divide\n", + ":89: RuntimeWarning: invalid value encountered in divide\n" + ] + }, + { + "name": "stdout", + "output_type": "stream", + "text": [ + "N_contact_pairs = 909\n", + "N_noncontact_cell_pairs = 909\n", + "Oligo NN Sst Gaba\n", + "N_contact_pairs = 616\n", + "N_noncontact_cell_pairs = 616\n" + ] + }, + { + "name": "stderr", + "output_type": "stream", + "text": [ + ":89: RuntimeWarning: divide by zero encountered in divide\n", + ":89: RuntimeWarning: invalid value encountered in divide\n", + ":89: RuntimeWarning: divide by zero encountered in divide\n", + ":89: RuntimeWarning: invalid value encountered in divide\n" + ] + }, + { + "name": "stdout", + "output_type": "stream", + "text": [ + "N_contact_pairs = 616\n", + "N_noncontact_cell_pairs = 616\n", + "CLA-EPd-CTX Car3 Glut Microglia NN\n", + "N_contact_pairs = 598\n", + "N_noncontact_cell_pairs = 598\n", + "N_contact_pairs = 598\n", + "N_noncontact_cell_pairs = 598\n" + ] + }, + { + "name": "stderr", + "output_type": "stream", + "text": [ + ":89: RuntimeWarning: divide by zero encountered in divide\n", + ":89: RuntimeWarning: invalid value encountered in divide\n", + ":89: RuntimeWarning: divide by zero encountered in divide\n", + ":89: RuntimeWarning: invalid value encountered in divide\n", + ":89: RuntimeWarning: divide by zero encountered in divide\n", + ":89: RuntimeWarning: invalid value encountered in divide\n" + ] + }, + { + "name": "stdout", + "output_type": "stream", + "text": [ + "OPC NN Oligo NN\n", + "N_contact_pairs = 1110\n", + "N_noncontact_cell_pairs = 1110\n" + ] + }, + { + "name": "stderr", + "output_type": "stream", + "text": [ + ":89: RuntimeWarning: divide by zero encountered in divide\n", + ":89: RuntimeWarning: invalid value encountered in divide\n", + ":89: RuntimeWarning: divide by zero encountered in divide\n", + ":89: RuntimeWarning: invalid value encountered in divide\n", + ":89: RuntimeWarning: divide by zero encountered in divide\n", + ":89: RuntimeWarning: invalid value encountered in divide\n" + ] + }, + { + "name": "stdout", + "output_type": "stream", + "text": [ + "N_contact_pairs = 1110\n", + "N_noncontact_cell_pairs = 1110\n", + "ENTmv-PA-COAp Glut OPC NN\n", + "N_contact_pairs = 112\n", + "N_noncontact_cell_pairs = 112\n", + "N_contact_pairs = 112\n", + "N_noncontact_cell_pairs = 112\n", + "ENTmv-PA-COAp Glut Microglia NN\n", + "N_contact_pairs = 85\n", + "N_noncontact_cell_pairs = 85\n" + ] + }, + { + "name": "stderr", + "output_type": "stream", + "text": [ + ":89: RuntimeWarning: divide by zero encountered in divide\n", + ":89: RuntimeWarning: invalid value encountered in divide\n", + ":89: RuntimeWarning: divide by zero encountered in divide\n", + ":89: RuntimeWarning: invalid value encountered in divide\n", + ":89: RuntimeWarning: divide by zero encountered in divide\n", + ":89: RuntimeWarning: invalid value encountered in divide\n", + ":89: RuntimeWarning: divide by zero encountered in divide\n", + ":89: RuntimeWarning: invalid value encountered in divide\n" + ] + }, + { + "name": "stdout", + "output_type": "stream", + "text": [ + "N_contact_pairs = 85\n", + "N_noncontact_cell_pairs = 85\n", + "IT EP-CLA Glut Lamp5 Lhx6 Gaba\n", + "N_contact_pairs = 141\n", + "N_noncontact_cell_pairs = 141\n", + "N_contact_pairs = 141\n", + "N_noncontact_cell_pairs = 141\n", + "COAa-PAA-MEA Barhl2 Glut COAa-PAA-MEA Barhl2 Glut\n", + "N_contact_pairs = 164\n", + "N_noncontact_cell_pairs = 164\n", + "ENTmv-PA-COAp Glut Sst Gaba\n", + "N_contact_pairs = 105\n", + "N_noncontact_cell_pairs = 105\n" + ] + }, + { + "name": "stderr", + "output_type": "stream", + "text": [ + ":89: RuntimeWarning: divide by zero encountered in divide\n", + ":89: RuntimeWarning: invalid value encountered in divide\n", + ":89: RuntimeWarning: divide by zero encountered in divide\n", + ":89: RuntimeWarning: invalid value encountered in divide\n", + ":89: RuntimeWarning: divide by zero encountered in divide\n", + ":89: RuntimeWarning: invalid value encountered in divide\n", + ":89: RuntimeWarning: divide by zero encountered in divide\n", + ":89: RuntimeWarning: invalid value encountered in divide\n" + ] + }, + { + "name": "stdout", + "output_type": "stream", + "text": [ + "N_contact_pairs = 105\n", + "N_noncontact_cell_pairs = 105\n", + "Astro-TE NN MEA Slc17a7 Glut\n", + "N_contact_pairs = 686\n", + "N_noncontact_cell_pairs = 686\n", + "N_contact_pairs = 686\n", + "N_noncontact_cell_pairs = 686\n" + ] + }, + { + "name": "stderr", + "output_type": "stream", + "text": [ + ":89: RuntimeWarning: divide by zero encountered in divide\n", + ":89: RuntimeWarning: invalid value encountered in divide\n", + ":89: RuntimeWarning: divide by zero encountered in divide\n", + ":89: RuntimeWarning: invalid value encountered in divide\n" + ] + }, + { + "name": "stdout", + "output_type": "stream", + "text": [ + "CLA-EPd-CTX Car3 Glut Oligo NN\n", + "N_contact_pairs = 859\n", + "N_noncontact_cell_pairs = 859\n", + "N_contact_pairs = 859\n", + "N_noncontact_cell_pairs = 859\n" + ] + }, + { + "name": "stderr", + "output_type": "stream", + "text": [ + ":89: RuntimeWarning: divide by zero encountered in divide\n", + ":89: RuntimeWarning: invalid value encountered in divide\n", + ":89: RuntimeWarning: divide by zero encountered in divide\n", + ":89: RuntimeWarning: invalid value encountered in divide\n" + ] + }, + { + "name": "stdout", + "output_type": "stream", + "text": [ + "Astro-TE NN ENTmv-PA-COAp Glut\n", + "N_contact_pairs = 291\n", + "N_noncontact_cell_pairs = 291\n", + "N_contact_pairs = 291\n", + "N_noncontact_cell_pairs = 291\n" + ] + }, + { + "name": "stderr", + "output_type": "stream", + "text": [ + ":89: RuntimeWarning: divide by zero encountered in divide\n", + ":89: RuntimeWarning: invalid value encountered in divide\n", + ":89: RuntimeWarning: divide by zero encountered in divide\n", + ":89: RuntimeWarning: invalid value encountered in divide\n" + ] + }, + { + "name": "stdout", + "output_type": "stream", + "text": [ + "LA-BLA-BMA-PA Glut Vip Gaba\n", + "N_contact_pairs = 1295\n", + "N_noncontact_cell_pairs = 1295\n" + ] + }, + { + "name": "stderr", + "output_type": "stream", + "text": [ + ":89: RuntimeWarning: divide by zero encountered in divide\n", + ":89: RuntimeWarning: invalid value encountered in divide\n", + ":89: RuntimeWarning: divide by zero encountered in divide\n", + ":89: RuntimeWarning: invalid value encountered in divide\n" + ] + }, + { + "name": "stdout", + "output_type": "stream", + "text": [ + "N_contact_pairs = 1295\n", + "N_noncontact_cell_pairs = 1295\n", + "Oligo NN Sncg Gaba\n", + "N_contact_pairs = 126\n", + "N_noncontact_cell_pairs = 126\n" + ] + }, + { + "name": "stderr", + "output_type": "stream", + "text": [ + ":89: RuntimeWarning: divide by zero encountered in divide\n", + ":89: RuntimeWarning: invalid value encountered in divide\n", + ":89: RuntimeWarning: divide by zero encountered in divide\n", + ":89: RuntimeWarning: invalid value encountered in divide\n" + ] + }, + { + "name": "stdout", + "output_type": "stream", + "text": [ + "N_contact_pairs = 126\n", + "N_noncontact_cell_pairs = 126\n", + "Astro-TE NN RHP-COA Ndnf Gaba\n", + "N_contact_pairs = 80\n", + "N_noncontact_cell_pairs = 80\n", + "N_contact_pairs = 80\n", + "N_noncontact_cell_pairs = 80\n" + ] + }, + { + "name": "stderr", + "output_type": "stream", + "text": [ + ":89: RuntimeWarning: divide by zero encountered in divide\n", + ":89: RuntimeWarning: invalid value encountered in divide\n", + ":89: RuntimeWarning: divide by zero encountered in divide\n", + ":89: RuntimeWarning: invalid value encountered in divide\n", + ":89: RuntimeWarning: divide by zero encountered in divide\n", + ":89: RuntimeWarning: invalid value encountered in divide\n", + ":89: RuntimeWarning: divide by zero encountered in divide\n", + ":89: RuntimeWarning: invalid value encountered in divide\n" + ] + }, + { + "name": "stdout", + "output_type": "stream", + "text": [ + "Lamp5 Lhx6 Gaba Sst Gaba\n", + "N_contact_pairs = 80\n", + "N_noncontact_cell_pairs = 80\n", + "N_contact_pairs = 80\n", + "N_noncontact_cell_pairs = 80\n", + "Astro-TE NN DG-PIR Ex IMN\n", + "N_contact_pairs = 129\n", + "N_noncontact_cell_pairs = 129\n" + ] + }, + { + "name": "stderr", + "output_type": "stream", + "text": [ + ":89: RuntimeWarning: divide by zero encountered in divide\n", + ":89: RuntimeWarning: invalid value encountered in divide\n", + ":89: RuntimeWarning: divide by zero encountered in divide\n", + ":89: RuntimeWarning: invalid value encountered in divide\n", + ":89: RuntimeWarning: divide by zero encountered in divide\n", + ":89: RuntimeWarning: invalid value encountered in divide\n", + ":89: RuntimeWarning: divide by zero encountered in divide\n", + ":89: RuntimeWarning: invalid value encountered in divide\n", + ":89: RuntimeWarning: divide by zero encountered in divide\n", + ":89: RuntimeWarning: invalid value encountered in divide\n" + ] + }, + { + "name": "stdout", + "output_type": "stream", + "text": [ + "N_contact_pairs = 129\n", + "N_noncontact_cell_pairs = 129\n", + "COAp Grxcr2 Glut Microglia NN\n", + "N_contact_pairs = 85\n", + "N_noncontact_cell_pairs = 85\n", + "N_contact_pairs = 85\n", + "N_noncontact_cell_pairs = 85\n", + "NLOT Rho Glut NLOT Rho Glut\n", + "N_contact_pairs = 39\n", + "N_noncontact_cell_pairs = 28\n", + "CLA-EPd-CTX Car3 Glut OPC NN\n", + "N_contact_pairs = 465\n", + "N_noncontact_cell_pairs = 465\n", + "N_contact_pairs = 465\n", + "N_noncontact_cell_pairs = 465\n", + "MEA Slc17a7 Glut Vip Gaba\n", + "N_contact_pairs = 206\n", + "N_noncontact_cell_pairs = 206\n", + "N_contact_pairs = 206\n", + "N_noncontact_cell_pairs = 206\n", + "IA Mgp Gaba Oligo NN\n" + ] + }, + { + "name": "stderr", + "output_type": "stream", + "text": [ + ":89: RuntimeWarning: divide by zero encountered in divide\n", + ":89: RuntimeWarning: invalid value encountered in divide\n", + ":89: RuntimeWarning: divide by zero encountered in divide\n", + ":89: RuntimeWarning: invalid value encountered in divide\n", + ":89: RuntimeWarning: divide by zero encountered in divide\n", + ":89: RuntimeWarning: invalid value encountered in divide\n", + ":89: RuntimeWarning: divide by zero encountered in divide\n", + ":89: RuntimeWarning: invalid value encountered in divide\n" + ] + }, + { + "name": "stdout", + "output_type": "stream", + "text": [ + "N_contact_pairs = 150\n", + "N_noncontact_cell_pairs = 150\n", + "N_contact_pairs = 150\n", + "N_noncontact_cell_pairs = 150\n", + "OPC NN Vip Gaba\n", + "N_contact_pairs = 297\n", + "N_noncontact_cell_pairs = 297\n" + ] + }, + { + "name": "stderr", + "output_type": "stream", + "text": [ + ":89: RuntimeWarning: divide by zero encountered in divide\n", + ":89: RuntimeWarning: invalid value encountered in divide\n", + ":89: RuntimeWarning: divide by zero encountered in divide\n", + ":89: RuntimeWarning: invalid value encountered in divide\n", + ":89: RuntimeWarning: divide by zero encountered in divide\n", + ":89: RuntimeWarning: invalid value encountered in divide\n" + ] + }, + { + "name": "stdout", + "output_type": "stream", + "text": [ + "N_contact_pairs = 297\n", + "N_noncontact_cell_pairs = 297\n", + "IT EP-CLA Glut Vip Gaba\n", + "N_contact_pairs = 93\n", + "N_noncontact_cell_pairs = 93\n", + "N_contact_pairs = 93\n", + "N_noncontact_cell_pairs = 93\n", + "Microglia NN Sst Gaba\n" + ] + }, + { + "name": "stderr", + "output_type": "stream", + "text": [ + ":89: RuntimeWarning: divide by zero encountered in divide\n", + ":89: RuntimeWarning: invalid value encountered in divide\n", + ":89: RuntimeWarning: divide by zero encountered in divide\n", + ":89: RuntimeWarning: invalid value encountered in divide\n", + ":89: RuntimeWarning: divide by zero encountered in divide\n", + ":89: RuntimeWarning: invalid value encountered in divide\n" + ] + }, + { + "name": "stdout", + "output_type": "stream", + "text": [ + "N_contact_pairs = 492\n", + "N_noncontact_cell_pairs = 492\n", + "N_contact_pairs = 492\n", + "N_noncontact_cell_pairs = 492\n", + "IT EP-CLA Glut Sst Gaba\n", + "N_contact_pairs = 570\n", + "N_noncontact_cell_pairs = 570\n" + ] + }, + { + "name": "stderr", + "output_type": "stream", + "text": [ + ":89: RuntimeWarning: divide by zero encountered in divide\n", + ":89: RuntimeWarning: invalid value encountered in divide\n", + ":89: RuntimeWarning: divide by zero encountered in divide\n", + ":89: RuntimeWarning: invalid value encountered in divide\n", + ":89: RuntimeWarning: divide by zero encountered in divide\n", + ":89: RuntimeWarning: invalid value encountered in divide\n" + ] + }, + { + "name": "stdout", + "output_type": "stream", + "text": [ + "N_contact_pairs = 570\n", + "N_noncontact_cell_pairs = 570\n", + "IT EP-CLA Glut Microglia NN\n", + "N_contact_pairs = 998\n", + "N_noncontact_cell_pairs = 998\n" + ] + }, + { + "name": "stderr", + "output_type": "stream", + "text": [ + ":89: RuntimeWarning: divide by zero encountered in divide\n", + ":89: RuntimeWarning: invalid value encountered in divide\n", + ":89: RuntimeWarning: divide by zero encountered in divide\n", + ":89: RuntimeWarning: invalid value encountered in divide\n" + ] + }, + { + "name": "stdout", + "output_type": "stream", + "text": [ + "N_contact_pairs = 998\n", + "N_noncontact_cell_pairs = 998\n", + "MEA-COA-BMA Ccdc42 Glut OPC NN\n", + "N_contact_pairs = 281\n", + "N_noncontact_cell_pairs = 281\n", + "N_contact_pairs = 281\n", + "N_noncontact_cell_pairs = 281\n", + "LA-BLA-BMA-PA Glut Pvalb chandelier Gaba\n" + ] + }, + { + "name": "stderr", + "output_type": "stream", + "text": [ + ":89: RuntimeWarning: divide by zero encountered in divide\n", + ":89: RuntimeWarning: invalid value encountered in divide\n", + ":89: RuntimeWarning: divide by zero encountered in divide\n", + ":89: RuntimeWarning: invalid value encountered in divide\n", + ":89: RuntimeWarning: divide by zero encountered in divide\n", + ":89: RuntimeWarning: invalid value encountered in divide\n" + ] + }, + { + "name": "stdout", + "output_type": "stream", + "text": [ + "N_contact_pairs = 339\n", + "N_noncontact_cell_pairs = 339\n", + "N_contact_pairs = 339\n", + "N_noncontact_cell_pairs = 339\n", + "Astro-TE NN STR-PAL Chst9 Gaba\n" + ] + }, + { + "name": "stderr", + "output_type": "stream", + "text": [ + ":89: RuntimeWarning: divide by zero encountered in divide\n", + ":89: RuntimeWarning: invalid value encountered in divide\n", + ":89: RuntimeWarning: divide by zero encountered in divide\n", + ":89: RuntimeWarning: invalid value encountered in divide\n" + ] + }, + { + "name": "stdout", + "output_type": "stream", + "text": [ + "N_contact_pairs = 1632\n", + "N_noncontact_cell_pairs = 1632\n", + "N_contact_pairs = 1632\n", + "N_noncontact_cell_pairs = 1632\n" + ] + }, + { + "name": "stderr", + "output_type": "stream", + "text": [ + ":89: RuntimeWarning: divide by zero encountered in divide\n", + ":89: RuntimeWarning: invalid value encountered in divide\n", + ":89: RuntimeWarning: divide by zero encountered in divide\n", + ":89: RuntimeWarning: invalid value encountered in divide\n" + ] + }, + { + "name": "stdout", + "output_type": "stream", + "text": [ + "COAa-PAA-MEA Barhl2 Glut Oligo NN\n", + "N_contact_pairs = 251\n", + "N_noncontact_cell_pairs = 251\n", + "N_contact_pairs = 251\n", + "N_noncontact_cell_pairs = 251\n", + "STR Prox1 Lhx6 Gaba STR-PAL Chst9 Gaba\n", + "N_contact_pairs = 52\n", + "N_noncontact_cell_pairs = 52\n" + ] + }, + { + "name": "stderr", + "output_type": "stream", + "text": [ + ":89: RuntimeWarning: divide by zero encountered in divide\n", + ":89: RuntimeWarning: invalid value encountered in divide\n", + ":89: RuntimeWarning: divide by zero encountered in divide\n", + ":89: RuntimeWarning: invalid value encountered in divide\n", + ":89: RuntimeWarning: divide by zero encountered in divide\n", + ":89: RuntimeWarning: invalid value encountered in divide\n", + ":89: RuntimeWarning: divide by zero encountered in divide\n", + ":89: RuntimeWarning: invalid value encountered in divide\n" + ] + }, + { + "name": "stdout", + "output_type": "stream", + "text": [ + "N_contact_pairs = 52\n", + "N_noncontact_cell_pairs = 52\n", + "Endo NN MEA-COA-BMA Ccdc42 Glut\n", + "N_contact_pairs = 605\n", + "N_noncontact_cell_pairs = 605\n", + "N_contact_pairs = 605\n", + "N_noncontact_cell_pairs = 605\n" + ] + }, + { + "name": "stderr", + "output_type": "stream", + "text": [ + ":89: RuntimeWarning: divide by zero encountered in divide\n", + ":89: RuntimeWarning: invalid value encountered in divide\n", + ":89: RuntimeWarning: divide by zero encountered in divide\n", + ":89: RuntimeWarning: invalid value encountered in divide\n" + ] + }, + { + "name": "stdout", + "output_type": "stream", + "text": [ + "Fiber_tracts\n" + ] + }, + { + "name": "stderr", + "output_type": "stream", + "text": [ + ":25: ImplicitModificationWarning: Trying to modify attribute `.obs` of view, initializing view as actual.\n", + ":28: ImplicitModificationWarning: Trying to modify attribute `.obs` of view, initializing view as actual.\n" + ] + }, + { + "name": "stdout", + "output_type": "stream", + "text": [ + "Oligo NN Oligo NN\n", + "N_contact_pairs = 393054\n", + "N_noncontact_cell_pairs = 393054\n" + ] + }, + { + "name": "stderr", + "output_type": "stream", + "text": [ + ":89: RuntimeWarning: divide by zero encountered in divide\n", + ":89: RuntimeWarning: invalid value encountered in divide\n" + ] + }, + { + "name": "stdout", + "output_type": "stream", + "text": [ + "Ependymal NN Ependymal NN\n", + "N_contact_pairs = 10417\n", + "N_noncontact_cell_pairs = 10417\n" + ] + }, + { + "name": "stderr", + "output_type": "stream", + "text": [ + ":89: RuntimeWarning: divide by zero encountered in divide\n", + ":89: RuntimeWarning: invalid value encountered in divide\n" + ] + }, + { + "name": "stdout", + "output_type": "stream", + "text": [ + "OB-STR-CTX Inh IMN OB-STR-CTX Inh IMN\n", + "N_contact_pairs = 22728\n", + "N_noncontact_cell_pairs = 22728\n" + ] + }, + { + "name": "stderr", + "output_type": "stream", + "text": [ + ":89: RuntimeWarning: divide by zero encountered in divide\n", + ":89: RuntimeWarning: invalid value encountered in divide\n" + ] + }, + { + "name": "stdout", + "output_type": "stream", + "text": [ + "VLMC NN VLMC NN\n", + "N_contact_pairs = 10941\n", + "N_noncontact_cell_pairs = 10941\n" + ] + }, + { + "name": "stderr", + "output_type": "stream", + "text": [ + ":89: RuntimeWarning: divide by zero encountered in divide\n", + ":89: RuntimeWarning: invalid value encountered in divide\n" + ] + }, + { + "name": "stdout", + "output_type": "stream", + "text": [ + "SMC NN SMC NN\n", + "N_contact_pairs = 3105\n", + "N_noncontact_cell_pairs = 3105\n", + "OEC NN OEC NN\n" + ] + }, + { + "name": "stderr", + "output_type": "stream", + "text": [ + ":89: RuntimeWarning: divide by zero encountered in divide\n", + ":89: RuntimeWarning: invalid value encountered in divide\n" + ] + }, + { + "name": "stdout", + "output_type": "stream", + "text": [ + "N_contact_pairs = 49441\n", + "N_noncontact_cell_pairs = 49441\n" + ] + }, + { + "name": "stderr", + "output_type": "stream", + "text": [ + ":89: RuntimeWarning: divide by zero encountered in divide\n", + ":89: RuntimeWarning: invalid value encountered in divide\n" + ] + }, + { + "name": "stdout", + "output_type": "stream", + "text": [ + "Endo NN SMC NN\n", + "N_contact_pairs = 4801\n", + "N_noncontact_cell_pairs = 4801\n" + ] + }, + { + "name": "stderr", + "output_type": "stream", + "text": [ + ":89: RuntimeWarning: divide by zero encountered in divide\n", + ":89: RuntimeWarning: invalid value encountered in divide\n" + ] + }, + { + "name": "stdout", + "output_type": "stream", + "text": [ + "N_contact_pairs = 4801\n", + "N_noncontact_cell_pairs = 4801\n" + ] + }, + { + "name": "stderr", + "output_type": "stream", + "text": [ + ":89: RuntimeWarning: divide by zero encountered in divide\n", + ":89: RuntimeWarning: invalid value encountered in divide\n" + ] + }, + { + "name": "stdout", + "output_type": "stream", + "text": [ + "Endo NN VLMC NN\n", + "N_contact_pairs = 9100\n", + "N_noncontact_cell_pairs = 9100\n" + ] + }, + { + "name": "stderr", + "output_type": "stream", + "text": [ + ":89: RuntimeWarning: divide by zero encountered in divide\n", + ":89: RuntimeWarning: invalid value encountered in divide\n" + ] + }, + { + "name": "stdout", + "output_type": "stream", + "text": [ + "N_contact_pairs = 9100\n", + "N_noncontact_cell_pairs = 9100\n" + ] + }, + { + "name": "stderr", + "output_type": "stream", + "text": [ + ":89: RuntimeWarning: divide by zero encountered in divide\n", + ":89: RuntimeWarning: invalid value encountered in divide\n" + ] + }, + { + "name": "stdout", + "output_type": "stream", + "text": [ + "Endo NN Endo NN\n", + "N_contact_pairs = 14824\n", + "N_noncontact_cell_pairs = 14824\n" + ] + }, + { + "name": "stderr", + "output_type": "stream", + "text": [ + ":89: RuntimeWarning: divide by zero encountered in divide\n", + ":89: RuntimeWarning: invalid value encountered in divide\n" + ] + }, + { + "name": "stdout", + "output_type": "stream", + "text": [ + "ABC NN ABC NN\n", + "N_contact_pairs = 1757\n", + "N_noncontact_cell_pairs = 1757\n", + "Astro-TE NN Oligo NN\n" + ] + }, + { + "name": "stderr", + "output_type": "stream", + "text": [ + ":89: RuntimeWarning: divide by zero encountered in divide\n", + ":89: RuntimeWarning: invalid value encountered in divide\n" + ] + }, + { + "name": "stdout", + "output_type": "stream", + "text": [ + "N_contact_pairs = 114812\n", + "N_noncontact_cell_pairs = 114812\n" + ] + }, + { + "name": "stderr", + "output_type": "stream", + "text": [ + ":89: RuntimeWarning: divide by zero encountered in divide\n", + ":89: RuntimeWarning: invalid value encountered in divide\n" + ] + }, + { + "name": "stdout", + "output_type": "stream", + "text": [ + "N_contact_pairs = 114812\n", + "N_noncontact_cell_pairs = 114812\n" + ] + }, + { + "name": "stderr", + "output_type": "stream", + "text": [ + ":89: RuntimeWarning: divide by zero encountered in divide\n", + ":89: RuntimeWarning: invalid value encountered in divide\n" + ] + }, + { + "name": "stdout", + "output_type": "stream", + "text": [ + "ABC NN VLMC NN\n", + "N_contact_pairs = 3785\n", + "N_noncontact_cell_pairs = 3785\n" + ] + }, + { + "name": "stderr", + "output_type": "stream", + "text": [ + ":89: RuntimeWarning: divide by zero encountered in divide\n", + ":89: RuntimeWarning: invalid value encountered in divide\n" + ] + }, + { + "name": "stdout", + "output_type": "stream", + "text": [ + "N_contact_pairs = 3785\n", + "N_noncontact_cell_pairs = 3785\n", + "Endo NN Peri NN\n" + ] + }, + { + "name": "stderr", + "output_type": "stream", + "text": [ + ":89: RuntimeWarning: divide by zero encountered in divide\n", + ":89: RuntimeWarning: invalid value encountered in divide\n" + ] + }, + { + "name": "stdout", + "output_type": "stream", + "text": [ + "N_contact_pairs = 5389\n", + "N_noncontact_cell_pairs = 5389\n" + ] + }, + { + "name": "stderr", + "output_type": "stream", + "text": [ + ":89: RuntimeWarning: divide by zero encountered in divide\n", + ":89: RuntimeWarning: invalid value encountered in divide\n" + ] + }, + { + "name": "stdout", + "output_type": "stream", + "text": [ + "N_contact_pairs = 5389\n", + "N_noncontact_cell_pairs = 5389\n" + ] + }, + { + "name": "stderr", + "output_type": "stream", + "text": [ + ":89: RuntimeWarning: divide by zero encountered in divide\n", + ":89: RuntimeWarning: invalid value encountered in divide\n" + ] + }, + { + "name": "stdout", + "output_type": "stream", + "text": [ + "SMC NN VLMC NN\n", + "N_contact_pairs = 3444\n", + "N_noncontact_cell_pairs = 3444\n" + ] + }, + { + "name": "stderr", + "output_type": "stream", + "text": [ + ":89: RuntimeWarning: divide by zero encountered in divide\n", + ":89: RuntimeWarning: invalid value encountered in divide\n" + ] + }, + { + "name": "stdout", + "output_type": "stream", + "text": [ + "N_contact_pairs = 3444\n", + "N_noncontact_cell_pairs = 3444\n", + "Astro-TE NN Astro-TE NN\n" + ] + }, + { + "name": "stderr", + "output_type": "stream", + "text": [ + ":89: RuntimeWarning: divide by zero encountered in divide\n", + ":89: RuntimeWarning: invalid value encountered in divide\n" + ] + }, + { + "name": "stdout", + "output_type": "stream", + "text": [ + "N_contact_pairs = 24025\n", + "N_noncontact_cell_pairs = 24025\n" + ] + }, + { + "name": "stderr", + "output_type": "stream", + "text": [ + ":89: RuntimeWarning: divide by zero encountered in divide\n", + ":89: RuntimeWarning: invalid value encountered in divide\n" + ] + }, + { + "name": "stdout", + "output_type": "stream", + "text": [ + "L6b CTX Glut L6b CTX Glut\n", + "N_contact_pairs = 4514\n", + "N_noncontact_cell_pairs = 4514\n" + ] + }, + { + "name": "stderr", + "output_type": "stream", + "text": [ + ":89: RuntimeWarning: divide by zero encountered in divide\n", + ":89: RuntimeWarning: invalid value encountered in divide\n" + ] + }, + { + "name": "stdout", + "output_type": "stream", + "text": [ + "BAM NN VLMC NN\n", + "N_contact_pairs = 2551\n", + "N_noncontact_cell_pairs = 2551\n" + ] + }, + { + "name": "stderr", + "output_type": "stream", + "text": [ + ":89: RuntimeWarning: divide by zero encountered in divide\n", + ":89: RuntimeWarning: invalid value encountered in divide\n" + ] + }, + { + "name": "stdout", + "output_type": "stream", + "text": [ + "N_contact_pairs = 2551\n", + "N_noncontact_cell_pairs = 2551\n", + "CHOR NN CHOR NN\n", + "N_contact_pairs = 5305\n", + "N_noncontact_cell_pairs = 903\n" + ] + }, + { + "name": "stderr", + "output_type": "stream", + "text": [ + ":89: RuntimeWarning: divide by zero encountered in divide\n", + ":89: RuntimeWarning: invalid value encountered in divide\n", + ":89: RuntimeWarning: divide by zero encountered in divide\n", + ":89: RuntimeWarning: invalid value encountered in divide\n" + ] + }, + { + "name": "stdout", + "output_type": "stream", + "text": [ + "Astro-TE NN OB-STR-CTX Inh IMN\n", + "N_contact_pairs = 15707\n", + "N_noncontact_cell_pairs = 15707\n" + ] + }, + { + "name": "stderr", + "output_type": "stream", + "text": [ + ":89: RuntimeWarning: divide by zero encountered in divide\n", + ":89: RuntimeWarning: invalid value encountered in divide\n" + ] + }, + { + "name": "stdout", + "output_type": "stream", + "text": [ + "N_contact_pairs = 15707\n", + "N_noncontact_cell_pairs = 15707\n" + ] + }, + { + "name": "stderr", + "output_type": "stream", + "text": [ + ":89: RuntimeWarning: divide by zero encountered in divide\n", + ":89: RuntimeWarning: invalid value encountered in divide\n" + ] + }, + { + "name": "stdout", + "output_type": "stream", + "text": [ + "BAM NN Endo NN\n", + "N_contact_pairs = 1866\n", + "N_noncontact_cell_pairs = 1866\n" + ] + }, + { + "name": "stderr", + "output_type": "stream", + "text": [ + ":89: RuntimeWarning: divide by zero encountered in divide\n", + ":89: RuntimeWarning: invalid value encountered in divide\n" + ] + }, + { + "name": "stdout", + "output_type": "stream", + "text": [ + "N_contact_pairs = 1866\n", + "N_noncontact_cell_pairs = 1866\n", + "Microglia NN Oligo NN\n" + ] + }, + { + "name": "stderr", + "output_type": "stream", + "text": [ + ":89: RuntimeWarning: divide by zero encountered in divide\n", + ":89: RuntimeWarning: invalid value encountered in divide\n" + ] + }, + { + "name": "stdout", + "output_type": "stream", + "text": [ + "N_contact_pairs = 38973\n", + "N_noncontact_cell_pairs = 38973\n" + ] + }, + { + "name": "stderr", + "output_type": "stream", + "text": [ + ":89: RuntimeWarning: divide by zero encountered in divide\n", + ":89: RuntimeWarning: invalid value encountered in divide\n" + ] + }, + { + "name": "stdout", + "output_type": "stream", + "text": [ + "N_contact_pairs = 38973\n", + "N_noncontact_cell_pairs = 38973\n" + ] + }, + { + "name": "stderr", + "output_type": "stream", + "text": [ + ":89: RuntimeWarning: divide by zero encountered in divide\n", + ":89: RuntimeWarning: invalid value encountered in divide\n" + ] + }, + { + "name": "stdout", + "output_type": "stream", + "text": [ + "Endo NN Oligo NN\n", + "N_contact_pairs = 71101\n", + "N_noncontact_cell_pairs = 71101\n" + ] + }, + { + "name": "stderr", + "output_type": "stream", + "text": [ + ":89: RuntimeWarning: divide by zero encountered in divide\n", + ":89: RuntimeWarning: invalid value encountered in divide\n" + ] + }, + { + "name": "stdout", + "output_type": "stream", + "text": [ + "N_contact_pairs = 71101\n", + "N_noncontact_cell_pairs = 71101\n" + ] + }, + { + "name": "stderr", + "output_type": "stream", + "text": [ + ":89: RuntimeWarning: divide by zero encountered in divide\n", + ":89: RuntimeWarning: invalid value encountered in divide\n" + ] + }, + { + "name": "stdout", + "output_type": "stream", + "text": [ + "Bergmann NN Bergmann NN\n", + "N_contact_pairs = 1436\n", + "N_noncontact_cell_pairs = 1436\n", + "Astro-TE NN Endo NN\n" + ] + }, + { + "name": "stderr", + "output_type": "stream", + "text": [ + ":89: RuntimeWarning: divide by zero encountered in divide\n", + ":89: RuntimeWarning: invalid value encountered in divide\n" + ] + }, + { + "name": "stdout", + "output_type": "stream", + "text": [ + "N_contact_pairs = 13922\n", + "N_noncontact_cell_pairs = 13922\n" + ] + }, + { + "name": "stderr", + "output_type": "stream", + "text": [ + ":89: RuntimeWarning: divide by zero encountered in divide\n", + ":89: RuntimeWarning: invalid value encountered in divide\n" + ] + }, + { + "name": "stdout", + "output_type": "stream", + "text": [ + "N_contact_pairs = 13922\n", + "N_noncontact_cell_pairs = 13922\n" + ] + }, + { + "name": "stderr", + "output_type": "stream", + "text": [ + ":89: RuntimeWarning: divide by zero encountered in divide\n", + ":89: RuntimeWarning: invalid value encountered in divide\n" + ] + }, + { + "name": "stdout", + "output_type": "stream", + "text": [ + "OPC NN Oligo NN\n", + "N_contact_pairs = 38971\n", + "N_noncontact_cell_pairs = 38971\n" + ] + }, + { + "name": "stderr", + "output_type": "stream", + "text": [ + ":89: RuntimeWarning: divide by zero encountered in divide\n", + ":89: RuntimeWarning: invalid value encountered in divide\n" + ] + }, + { + "name": "stdout", + "output_type": "stream", + "text": [ + "N_contact_pairs = 38971\n", + "N_noncontact_cell_pairs = 38971\n" + ] + }, + { + "name": "stderr", + "output_type": "stream", + "text": [ + ":89: RuntimeWarning: divide by zero encountered in divide\n", + ":89: RuntimeWarning: invalid value encountered in divide\n" + ] + }, + { + "name": "stdout", + "output_type": "stream", + "text": [ + "Endo NN Microglia NN\n", + "N_contact_pairs = 5996\n", + "N_noncontact_cell_pairs = 5996\n" + ] + }, + { + "name": "stderr", + "output_type": "stream", + "text": [ + ":89: RuntimeWarning: divide by zero encountered in divide\n", + ":89: RuntimeWarning: invalid value encountered in divide\n" + ] + }, + { + "name": "stdout", + "output_type": "stream", + "text": [ + "N_contact_pairs = 5996\n", + "N_noncontact_cell_pairs = 5996\n" + ] + }, + { + "name": "stderr", + "output_type": "stream", + "text": [ + ":89: RuntimeWarning: divide by zero encountered in divide\n", + ":89: RuntimeWarning: invalid value encountered in divide\n" + ] + }, + { + "name": "stdout", + "output_type": "stream", + "text": [ + "Peri NN VLMC NN\n", + "N_contact_pairs = 1113\n", + "N_noncontact_cell_pairs = 1113\n" + ] + }, + { + "name": "stderr", + "output_type": "stream", + "text": [ + ":89: RuntimeWarning: divide by zero encountered in divide\n", + ":89: RuntimeWarning: invalid value encountered in divide\n" + ] + }, + { + "name": "stdout", + "output_type": "stream", + "text": [ + "N_contact_pairs = 1113\n", + "N_noncontact_cell_pairs = 1113\n", + "BAM NN SMC NN\n", + "N_contact_pairs = 482\n", + "N_noncontact_cell_pairs = 482\n" + ] + }, + { + "name": "stderr", + "output_type": "stream", + "text": [ + ":89: RuntimeWarning: divide by zero encountered in divide\n", + ":89: RuntimeWarning: invalid value encountered in divide\n", + ":89: RuntimeWarning: divide by zero encountered in divide\n", + ":89: RuntimeWarning: invalid value encountered in divide\n" + ] + }, + { + "name": "stdout", + "output_type": "stream", + "text": [ + "N_contact_pairs = 482\n", + "N_noncontact_cell_pairs = 482\n", + "Astro-TE NN Microglia NN\n" + ] + }, + { + "name": "stderr", + "output_type": "stream", + "text": [ + ":89: RuntimeWarning: divide by zero encountered in divide\n", + ":89: RuntimeWarning: invalid value encountered in divide\n" + ] + }, + { + "name": "stdout", + "output_type": "stream", + "text": [ + "N_contact_pairs = 7500\n", + "N_noncontact_cell_pairs = 7500\n" + ] + }, + { + "name": "stderr", + "output_type": "stream", + "text": [ + ":89: RuntimeWarning: divide by zero encountered in divide\n", + ":89: RuntimeWarning: invalid value encountered in divide\n" + ] + }, + { + "name": "stdout", + "output_type": "stream", + "text": [ + "N_contact_pairs = 7500\n", + "N_noncontact_cell_pairs = 7500\n" + ] + }, + { + "name": "stderr", + "output_type": "stream", + "text": [ + ":89: RuntimeWarning: divide by zero encountered in divide\n", + ":89: RuntimeWarning: invalid value encountered in divide\n" + ] + }, + { + "name": "stdout", + "output_type": "stream", + "text": [ + "Endo NN OEC NN\n", + "N_contact_pairs = 9147\n", + "N_noncontact_cell_pairs = 9147\n" + ] + }, + { + "name": "stderr", + "output_type": "stream", + "text": [ + ":89: RuntimeWarning: divide by zero encountered in divide\n", + ":89: RuntimeWarning: invalid value encountered in divide\n" + ] + }, + { + "name": "stdout", + "output_type": "stream", + "text": [ + "N_contact_pairs = 9147\n", + "N_noncontact_cell_pairs = 9147\n" + ] + }, + { + "name": "stderr", + "output_type": "stream", + "text": [ + ":89: RuntimeWarning: divide by zero encountered in divide\n", + ":89: RuntimeWarning: invalid value encountered in divide\n" + ] + }, + { + "name": "stdout", + "output_type": "stream", + "text": [ + "Astro-TE NN Ependymal NN\n", + "N_contact_pairs = 3016\n", + "N_noncontact_cell_pairs = 3016\n" + ] + }, + { + "name": "stderr", + "output_type": "stream", + "text": [ + ":89: RuntimeWarning: divide by zero encountered in divide\n", + ":89: RuntimeWarning: invalid value encountered in divide\n" + ] + }, + { + "name": "stdout", + "output_type": "stream", + "text": [ + "N_contact_pairs = 3016\n", + "N_noncontact_cell_pairs = 3016\n", + "ABC NN BAM NN\n" + ] + }, + { + "name": "stderr", + "output_type": "stream", + "text": [ + ":89: RuntimeWarning: divide by zero encountered in divide\n", + ":89: RuntimeWarning: invalid value encountered in divide\n", + ":89: RuntimeWarning: divide by zero encountered in divide\n", + ":89: RuntimeWarning: invalid value encountered in divide\n", + ":89: RuntimeWarning: divide by zero encountered in divide\n", + ":89: RuntimeWarning: invalid value encountered in divide\n" + ] + }, + { + "name": "stdout", + "output_type": "stream", + "text": [ + "N_contact_pairs = 439\n", + "N_noncontact_cell_pairs = 439\n", + "N_contact_pairs = 439\n", + "N_noncontact_cell_pairs = 439\n", + "Astro-TE NN VLMC NN\n", + "N_contact_pairs = 1293\n", + "N_noncontact_cell_pairs = 1293\n" + ] + }, + { + "name": "stderr", + "output_type": "stream", + "text": [ + ":89: RuntimeWarning: divide by zero encountered in divide\n", + ":89: RuntimeWarning: invalid value encountered in divide\n" + ] + }, + { + "name": "stdout", + "output_type": "stream", + "text": [ + "N_contact_pairs = 1293\n", + "N_noncontact_cell_pairs = 1293\n", + "OPC NN OPC NN\n" + ] + }, + { + "name": "stderr", + "output_type": "stream", + "text": [ + ":89: RuntimeWarning: divide by zero encountered in divide\n", + ":89: RuntimeWarning: invalid value encountered in divide\n" + ] + }, + { + "name": "stdout", + "output_type": "stream", + "text": [ + "N_contact_pairs = 1674\n", + "N_noncontact_cell_pairs = 1674\n", + "OEC NN VLMC NN\n" + ] + }, + { + "name": "stderr", + "output_type": "stream", + "text": [ + ":89: RuntimeWarning: divide by zero encountered in divide\n", + ":89: RuntimeWarning: invalid value encountered in divide\n" + ] + }, + { + "name": "stdout", + "output_type": "stream", + "text": [ + "N_contact_pairs = 8991\n", + "N_noncontact_cell_pairs = 8991\n" + ] + }, + { + "name": "stderr", + "output_type": "stream", + "text": [ + ":89: RuntimeWarning: divide by zero encountered in divide\n", + ":89: RuntimeWarning: invalid value encountered in divide\n" + ] + }, + { + "name": "stdout", + "output_type": "stream", + "text": [ + "N_contact_pairs = 8991\n", + "N_noncontact_cell_pairs = 8991\n" + ] + }, + { + "name": "stderr", + "output_type": "stream", + "text": [ + ":89: RuntimeWarning: divide by zero encountered in divide\n", + ":89: RuntimeWarning: invalid value encountered in divide\n", + ":89: RuntimeWarning: divide by zero encountered in divide\n", + ":89: RuntimeWarning: invalid value encountered in divide\n" + ] + }, + { + "name": "stdout", + "output_type": "stream", + "text": [ + "BAM NN BAM NN\n", + "N_contact_pairs = 237\n", + "N_noncontact_cell_pairs = 237\n", + "Astro-TE NN OPC NN\n", + "N_contact_pairs = 6939\n", + "N_noncontact_cell_pairs = 6939\n" + ] + }, + { + "name": "stderr", + "output_type": "stream", + "text": [ + ":89: RuntimeWarning: divide by zero encountered in divide\n", + ":89: RuntimeWarning: invalid value encountered in divide\n" + ] + }, + { + "name": "stdout", + "output_type": "stream", + "text": [ + "N_contact_pairs = 6939\n", + "N_noncontact_cell_pairs = 6939\n" + ] + }, + { + "name": "stderr", + "output_type": "stream", + "text": [ + ":89: RuntimeWarning: divide by zero encountered in divide\n", + ":89: RuntimeWarning: invalid value encountered in divide\n", + ":89: RuntimeWarning: divide by zero encountered in divide\n", + ":89: RuntimeWarning: invalid value encountered in divide\n" + ] + }, + { + "name": "stdout", + "output_type": "stream", + "text": [ + "CHOR NN VLMC NN\n", + "N_contact_pairs = 1763\n", + "N_noncontact_cell_pairs = 1763\n", + "N_contact_pairs = 1763\n", + "N_noncontact_cell_pairs = 1763\n", + "Endo NN L6b CTX Glut\n" + ] + }, + { + "name": "stderr", + "output_type": "stream", + "text": [ + ":89: RuntimeWarning: divide by zero encountered in divide\n", + ":89: RuntimeWarning: invalid value encountered in divide\n" + ] + }, + { + "name": "stdout", + "output_type": "stream", + "text": [ + "N_contact_pairs = 3218\n", + "N_noncontact_cell_pairs = 3218\n" + ] + }, + { + "name": "stderr", + "output_type": "stream", + "text": [ + ":89: RuntimeWarning: divide by zero encountered in divide\n", + ":89: RuntimeWarning: invalid value encountered in divide\n" + ] + }, + { + "name": "stdout", + "output_type": "stream", + "text": [ + "N_contact_pairs = 3218\n", + "N_noncontact_cell_pairs = 3218\n", + "Oligo NN Peri NN\n" + ] + }, + { + "name": "stderr", + "output_type": "stream", + "text": [ + ":89: RuntimeWarning: divide by zero encountered in divide\n", + ":89: RuntimeWarning: invalid value encountered in divide\n" + ] + }, + { + "name": "stdout", + "output_type": "stream", + "text": [ + "N_contact_pairs = 13002\n", + "N_noncontact_cell_pairs = 13002\n" + ] + }, + { + "name": "stderr", + "output_type": "stream", + "text": [ + ":89: RuntimeWarning: divide by zero encountered in divide\n", + ":89: RuntimeWarning: invalid value encountered in divide\n" + ] + }, + { + "name": "stdout", + "output_type": "stream", + "text": [ + "N_contact_pairs = 13002\n", + "N_noncontact_cell_pairs = 13002\n" + ] + }, + { + "name": "stderr", + "output_type": "stream", + "text": [ + ":89: RuntimeWarning: divide by zero encountered in divide\n", + ":89: RuntimeWarning: invalid value encountered in divide\n", + ":89: RuntimeWarning: divide by zero encountered in divide\n", + ":89: RuntimeWarning: invalid value encountered in divide\n" + ] + }, + { + "name": "stdout", + "output_type": "stream", + "text": [ + "Hypendymal NN Hypendymal NN\n", + "N_contact_pairs = 124\n", + "N_noncontact_cell_pairs = 15\n", + "Lymphoid NN VLMC NN\n", + "N_contact_pairs = 377\n", + "N_noncontact_cell_pairs = 377\n" + ] + }, + { + "name": "stderr", + "output_type": "stream", + "text": [ + ":89: RuntimeWarning: divide by zero encountered in divide\n", + ":89: RuntimeWarning: invalid value encountered in divide\n", + ":89: RuntimeWarning: divide by zero encountered in divide\n", + ":89: RuntimeWarning: invalid value encountered in divide\n" + ] + }, + { + "name": "stdout", + "output_type": "stream", + "text": [ + "N_contact_pairs = 377\n", + "N_noncontact_cell_pairs = 377\n", + "Microglia NN OEC NN\n", + "N_contact_pairs = 2018\n", + "N_noncontact_cell_pairs = 2018\n" + ] + }, + { + "name": "stderr", + "output_type": "stream", + "text": [ + ":89: RuntimeWarning: divide by zero encountered in divide\n", + ":89: RuntimeWarning: invalid value encountered in divide\n" + ] + }, + { + "name": "stdout", + "output_type": "stream", + "text": [ + "N_contact_pairs = 2018\n", + "N_noncontact_cell_pairs = 2018\n", + "Astro-TE NN Peri NN\n" + ] + }, + { + "name": "stderr", + "output_type": "stream", + "text": [ + ":89: RuntimeWarning: divide by zero encountered in divide\n", + ":89: RuntimeWarning: invalid value encountered in divide\n" + ] + }, + { + "name": "stdout", + "output_type": "stream", + "text": [ + "N_contact_pairs = 2700\n", + "N_noncontact_cell_pairs = 2700\n" + ] + }, + { + "name": "stderr", + "output_type": "stream", + "text": [ + ":89: RuntimeWarning: divide by zero encountered in divide\n", + ":89: RuntimeWarning: invalid value encountered in divide\n" + ] + }, + { + "name": "stdout", + "output_type": "stream", + "text": [ + "N_contact_pairs = 2700\n", + "N_noncontact_cell_pairs = 2700\n", + "Tanycyte NN Tanycyte NN\n", + "N_contact_pairs = 265\n", + "N_noncontact_cell_pairs = 265\n" + ] + }, + { + "name": "stderr", + "output_type": "stream", + "text": [ + ":89: RuntimeWarning: divide by zero encountered in divide\n", + ":89: RuntimeWarning: invalid value encountered in divide\n", + ":89: RuntimeWarning: divide by zero encountered in divide\n", + ":89: RuntimeWarning: invalid value encountered in divide\n" + ] + }, + { + "name": "stdout", + "output_type": "stream", + "text": [ + "Endo NN OPC NN\n", + "N_contact_pairs = 4838\n", + "N_noncontact_cell_pairs = 4838\n" + ] + }, + { + "name": "stderr", + "output_type": "stream", + "text": [ + ":89: RuntimeWarning: divide by zero encountered in divide\n", + ":89: RuntimeWarning: invalid value encountered in divide\n" + ] + }, + { + "name": "stdout", + "output_type": "stream", + "text": [ + "N_contact_pairs = 4838\n", + "N_noncontact_cell_pairs = 4838\n" + ] + }, + { + "name": "stderr", + "output_type": "stream", + "text": [ + ":89: RuntimeWarning: divide by zero encountered in divide\n", + ":89: RuntimeWarning: invalid value encountered in divide\n" + ] + }, + { + "name": "stdout", + "output_type": "stream", + "text": [ + "Astro-CB NN Oligo NN\n", + "N_contact_pairs = 2747\n", + "N_noncontact_cell_pairs = 2747\n" + ] + }, + { + "name": "stderr", + "output_type": "stream", + "text": [ + ":89: RuntimeWarning: divide by zero encountered in divide\n", + ":89: RuntimeWarning: invalid value encountered in divide\n" + ] + }, + { + "name": "stdout", + "output_type": "stream", + "text": [ + "N_contact_pairs = 2747\n", + "N_noncontact_cell_pairs = 2747\n" + ] + }, + { + "name": "stderr", + "output_type": "stream", + "text": [ + ":89: RuntimeWarning: divide by zero encountered in divide\n", + ":89: RuntimeWarning: invalid value encountered in divide\n" + ] + }, + { + "name": "stdout", + "output_type": "stream", + "text": [ + "Bergmann NN Endo NN\n", + "N_contact_pairs = 590\n", + "N_noncontact_cell_pairs = 590\n" + ] + }, + { + "name": "stderr", + "output_type": "stream", + "text": [ + ":89: RuntimeWarning: divide by zero encountered in divide\n", + ":89: RuntimeWarning: invalid value encountered in divide\n" + ] + }, + { + "name": "stdout", + "output_type": "stream", + "text": [ + "N_contact_pairs = 590\n", + "N_noncontact_cell_pairs = 590\n", + "Microglia NN OB-STR-CTX Inh IMN\n" + ] + }, + { + "name": "stderr", + "output_type": "stream", + "text": [ + ":89: RuntimeWarning: divide by zero encountered in divide\n", + ":89: RuntimeWarning: invalid value encountered in divide\n" + ] + }, + { + "name": "stdout", + "output_type": "stream", + "text": [ + "N_contact_pairs = 1764\n", + "N_noncontact_cell_pairs = 1764\n" + ] + }, + { + "name": "stderr", + "output_type": "stream", + "text": [ + ":89: RuntimeWarning: divide by zero encountered in divide\n", + ":89: RuntimeWarning: invalid value encountered in divide\n" + ] + }, + { + "name": "stdout", + "output_type": "stream", + "text": [ + "N_contact_pairs = 1764\n", + "N_noncontact_cell_pairs = 1764\n", + "BAM NN Peri NN\n" + ] + }, + { + "name": "stderr", + "output_type": "stream", + "text": [ + ":89: RuntimeWarning: divide by zero encountered in divide\n", + ":89: RuntimeWarning: invalid value encountered in divide\n", + ":89: RuntimeWarning: divide by zero encountered in divide\n", + ":89: RuntimeWarning: invalid value encountered in divide\n" + ] + }, + { + "name": "stdout", + "output_type": "stream", + "text": [ + "N_contact_pairs = 244\n", + "N_noncontact_cell_pairs = 244\n", + "N_contact_pairs = 244\n", + "N_noncontact_cell_pairs = 244\n", + "Microglia NN OPC NN\n" + ] + }, + { + "name": "stderr", + "output_type": "stream", + "text": [ + ":89: RuntimeWarning: divide by zero encountered in divide\n", + ":89: RuntimeWarning: invalid value encountered in divide\n" + ] + }, + { + "name": "stdout", + "output_type": "stream", + "text": [ + "N_contact_pairs = 2434\n", + "N_noncontact_cell_pairs = 2434\n" + ] + }, + { + "name": "stderr", + "output_type": "stream", + "text": [ + ":89: RuntimeWarning: divide by zero encountered in divide\n", + ":89: RuntimeWarning: invalid value encountered in divide\n" + ] + }, + { + "name": "stdout", + "output_type": "stream", + "text": [ + "N_contact_pairs = 2434\n", + "N_noncontact_cell_pairs = 2434\n", + "Peri NN Peri NN\n" + ] + }, + { + "name": "stderr", + "output_type": "stream", + "text": [ + ":89: RuntimeWarning: divide by zero encountered in divide\n", + ":89: RuntimeWarning: invalid value encountered in divide\n", + ":89: RuntimeWarning: divide by zero encountered in divide\n", + ":89: RuntimeWarning: invalid value encountered in divide\n" + ] + }, + { + "name": "stdout", + "output_type": "stream", + "text": [ + "N_contact_pairs = 382\n", + "N_noncontact_cell_pairs = 382\n", + "BAM NN OEC NN\n", + "N_contact_pairs = 1921\n", + "N_noncontact_cell_pairs = 1921\n", + "N_contact_pairs = 1921\n", + "N_noncontact_cell_pairs = 1921\n" + ] + }, + { + "name": "stderr", + "output_type": "stream", + "text": [ + ":89: RuntimeWarning: divide by zero encountered in divide\n", + ":89: RuntimeWarning: invalid value encountered in divide\n", + ":89: RuntimeWarning: divide by zero encountered in divide\n", + ":89: RuntimeWarning: invalid value encountered in divide\n" + ] + }, + { + "name": "stdout", + "output_type": "stream", + "text": [ + "Microglia NN Peri NN\n", + "N_contact_pairs = 1109\n", + "N_noncontact_cell_pairs = 1109\n" + ] + }, + { + "name": "stderr", + "output_type": "stream", + "text": [ + ":89: RuntimeWarning: divide by zero encountered in divide\n", + ":89: RuntimeWarning: invalid value encountered in divide\n" + ] + }, + { + "name": "stdout", + "output_type": "stream", + "text": [ + "N_contact_pairs = 1109\n", + "N_noncontact_cell_pairs = 1109\n", + "Ependymal NN OB-STR-CTX Inh IMN\n", + "N_contact_pairs = 968\n", + "N_noncontact_cell_pairs = 968\n" + ] + }, + { + "name": "stderr", + "output_type": "stream", + "text": [ + ":89: RuntimeWarning: divide by zero encountered in divide\n", + ":89: RuntimeWarning: invalid value encountered in divide\n", + ":89: RuntimeWarning: divide by zero encountered in divide\n", + ":89: RuntimeWarning: invalid value encountered in divide\n" + ] + }, + { + "name": "stdout", + "output_type": "stream", + "text": [ + "N_contact_pairs = 968\n", + "N_noncontact_cell_pairs = 968\n", + "Microglia NN Microglia NN\n" + ] + }, + { + "name": "stderr", + "output_type": "stream", + "text": [ + ":89: RuntimeWarning: divide by zero encountered in divide\n", + ":89: RuntimeWarning: invalid value encountered in divide\n" + ] + }, + { + "name": "stdout", + "output_type": "stream", + "text": [ + "N_contact_pairs = 1369\n", + "N_noncontact_cell_pairs = 1369\n", + "Lymphoid NN SMC NN\n", + "N_contact_pairs = 113\n", + "N_noncontact_cell_pairs = 113\n" + ] + }, + { + "name": "stderr", + "output_type": "stream", + "text": [ + ":89: RuntimeWarning: divide by zero encountered in divide\n", + ":89: RuntimeWarning: invalid value encountered in divide\n", + ":89: RuntimeWarning: divide by zero encountered in divide\n", + ":89: RuntimeWarning: invalid value encountered in divide\n", + ":89: RuntimeWarning: divide by zero encountered in divide\n", + ":89: RuntimeWarning: invalid value encountered in divide\n" + ] + }, + { + "name": "stdout", + "output_type": "stream", + "text": [ + "N_contact_pairs = 113\n", + "N_noncontact_cell_pairs = 113\n", + "Endo NN Lymphoid NN\n", + "N_contact_pairs = 282\n", + "N_noncontact_cell_pairs = 282\n" + ] + }, + { + "name": "stderr", + "output_type": "stream", + "text": [ + ":89: RuntimeWarning: divide by zero encountered in divide\n", + ":89: RuntimeWarning: invalid value encountered in divide\n" + ] + }, + { + "name": "stdout", + "output_type": "stream", + "text": [ + "N_contact_pairs = 282\n", + "N_noncontact_cell_pairs = 282\n", + "DC NN VLMC NN\n", + "N_contact_pairs = 99\n", + "N_noncontact_cell_pairs = 99\n" + ] + }, + { + "name": "stderr", + "output_type": "stream", + "text": [ + ":89: RuntimeWarning: divide by zero encountered in divide\n", + ":89: RuntimeWarning: invalid value encountered in divide\n", + ":89: RuntimeWarning: divide by zero encountered in divide\n", + ":89: RuntimeWarning: invalid value encountered in divide\n" + ] + }, + { + "name": "stdout", + "output_type": "stream", + "text": [ + "N_contact_pairs = 99\n", + "N_noncontact_cell_pairs = 99\n", + "OEC NN Peri NN\n", + "N_contact_pairs = 1356\n", + "N_noncontact_cell_pairs = 1356\n" + ] + }, + { + "name": "stderr", + "output_type": "stream", + "text": [ + ":89: RuntimeWarning: divide by zero encountered in divide\n", + ":89: RuntimeWarning: invalid value encountered in divide\n", + ":89: RuntimeWarning: divide by zero encountered in divide\n", + ":89: RuntimeWarning: invalid value encountered in divide\n" + ] + }, + { + "name": "stdout", + "output_type": "stream", + "text": [ + "N_contact_pairs = 1356\n", + "N_noncontact_cell_pairs = 1356\n", + "BAM NN CHOR NN\n", + "N_contact_pairs = 263\n", + "N_noncontact_cell_pairs = 263\n" + ] + }, + { + "name": "stderr", + "output_type": "stream", + "text": [ + ":89: RuntimeWarning: divide by zero encountered in divide\n", + ":89: RuntimeWarning: invalid value encountered in divide\n", + ":89: RuntimeWarning: divide by zero encountered in divide\n", + ":89: RuntimeWarning: invalid value encountered in divide\n", + ":89: RuntimeWarning: divide by zero encountered in divide\n", + ":89: RuntimeWarning: invalid value encountered in divide\n" + ] + }, + { + "name": "stdout", + "output_type": "stream", + "text": [ + "N_contact_pairs = 263\n", + "N_noncontact_cell_pairs = 263\n", + "ABC NN Endo NN\n", + "N_contact_pairs = 642\n", + "N_noncontact_cell_pairs = 642\n" + ] + }, + { + "name": "stderr", + "output_type": "stream", + "text": [ + ":89: RuntimeWarning: divide by zero encountered in divide\n", + ":89: RuntimeWarning: invalid value encountered in divide\n" + ] + }, + { + "name": "stdout", + "output_type": "stream", + "text": [ + "N_contact_pairs = 642\n", + "N_noncontact_cell_pairs = 642\n", + "Lymphoid NN Lymphoid NN\n", + "N_contact_pairs = 43\n", + "N_noncontact_cell_pairs = 43\n", + "Microglia NN VLMC NN\n" + ] + }, + { + "name": "stderr", + "output_type": "stream", + "text": [ + ":89: RuntimeWarning: divide by zero encountered in divide\n", + ":89: RuntimeWarning: invalid value encountered in divide\n", + ":89: RuntimeWarning: divide by zero encountered in divide\n", + ":89: RuntimeWarning: invalid value encountered in divide\n" + ] + }, + { + "name": "stdout", + "output_type": "stream", + "text": [ + "N_contact_pairs = 964\n", + "N_noncontact_cell_pairs = 964\n" + ] + }, + { + "name": "stderr", + "output_type": "stream", + "text": [ + ":89: RuntimeWarning: divide by zero encountered in divide\n", + ":89: RuntimeWarning: invalid value encountered in divide\n" + ] + }, + { + "name": "stdout", + "output_type": "stream", + "text": [ + "N_contact_pairs = 964\n", + "N_noncontact_cell_pairs = 964\n", + "Endo NN OB-STR-CTX Inh IMN\n" + ] + }, + { + "name": "stderr", + "output_type": "stream", + "text": [ + ":89: RuntimeWarning: divide by zero encountered in divide\n", + ":89: RuntimeWarning: invalid value encountered in divide\n" + ] + }, + { + "name": "stdout", + "output_type": "stream", + "text": [ + "N_contact_pairs = 2040\n", + "N_noncontact_cell_pairs = 2040\n" + ] + }, + { + "name": "stderr", + "output_type": "stream", + "text": [ + ":89: RuntimeWarning: divide by zero encountered in divide\n", + ":89: RuntimeWarning: invalid value encountered in divide\n" + ] + }, + { + "name": "stdout", + "output_type": "stream", + "text": [ + "N_contact_pairs = 2040\n", + "N_noncontact_cell_pairs = 2040\n", + "Ependymal NN Microglia NN\n" + ] + }, + { + "name": "stderr", + "output_type": "stream", + "text": [ + ":89: RuntimeWarning: divide by zero encountered in divide\n", + ":89: RuntimeWarning: invalid value encountered in divide\n" + ] + }, + { + "name": "stdout", + "output_type": "stream", + "text": [ + "N_contact_pairs = 613\n", + "N_noncontact_cell_pairs = 613\n" + ] + }, + { + "name": "stderr", + "output_type": "stream", + "text": [ + ":89: RuntimeWarning: divide by zero encountered in divide\n", + ":89: RuntimeWarning: invalid value encountered in divide\n" + ] + }, + { + "name": "stdout", + "output_type": "stream", + "text": [ + "N_contact_pairs = 613\n", + "N_noncontact_cell_pairs = 613\n", + "ABC NN SMC NN\n", + "N_contact_pairs = 201\n", + "N_noncontact_cell_pairs = 201\n" + ] + }, + { + "name": "stderr", + "output_type": "stream", + "text": [ + ":89: RuntimeWarning: divide by zero encountered in divide\n", + ":89: RuntimeWarning: invalid value encountered in divide\n", + ":89: RuntimeWarning: divide by zero encountered in divide\n", + ":89: RuntimeWarning: invalid value encountered in divide\n", + ":89: RuntimeWarning: divide by zero encountered in divide\n", + ":89: RuntimeWarning: invalid value encountered in divide\n" + ] + }, + { + "name": "stdout", + "output_type": "stream", + "text": [ + "N_contact_pairs = 201\n", + "N_noncontact_cell_pairs = 201\n", + "OB-STR-CTX Inh IMN Oligo NN\n", + "N_contact_pairs = 18062\n", + "N_noncontact_cell_pairs = 18062\n" + ] + }, + { + "name": "stderr", + "output_type": "stream", + "text": [ + ":89: RuntimeWarning: divide by zero encountered in divide\n", + ":89: RuntimeWarning: invalid value encountered in divide\n" + ] + }, + { + "name": "stdout", + "output_type": "stream", + "text": [ + "N_contact_pairs = 18062\n", + "N_noncontact_cell_pairs = 18062\n" + ] + }, + { + "name": "stderr", + "output_type": "stream", + "text": [ + ":89: RuntimeWarning: divide by zero encountered in divide\n", + ":89: RuntimeWarning: invalid value encountered in divide\n" + ] + }, + { + "name": "stdout", + "output_type": "stream", + "text": [ + "Astro-CB NN Endo NN\n", + "N_contact_pairs = 501\n", + "N_noncontact_cell_pairs = 501\n" + ] + }, + { + "name": "stderr", + "output_type": "stream", + "text": [ + ":89: RuntimeWarning: divide by zero encountered in divide\n", + ":89: RuntimeWarning: invalid value encountered in divide\n" + ] + }, + { + "name": "stdout", + "output_type": "stream", + "text": [ + "N_contact_pairs = 501\n", + "N_noncontact_cell_pairs = 501\n", + "CHOR NN Endo NN\n" + ] + }, + { + "name": "stderr", + "output_type": "stream", + "text": [ + ":89: RuntimeWarning: divide by zero encountered in divide\n", + ":89: RuntimeWarning: invalid value encountered in divide\n" + ] + }, + { + "name": "stdout", + "output_type": "stream", + "text": [ + "N_contact_pairs = 586\n", + "N_noncontact_cell_pairs = 586\n" + ] + }, + { + "name": "stderr", + "output_type": "stream", + "text": [ + ":89: RuntimeWarning: divide by zero encountered in divide\n", + ":89: RuntimeWarning: invalid value encountered in divide\n" + ] + }, + { + "name": "stdout", + "output_type": "stream", + "text": [ + "N_contact_pairs = 586\n", + "N_noncontact_cell_pairs = 586\n", + "L6b CTX Glut Microglia NN\n" + ] + }, + { + "name": "stderr", + "output_type": "stream", + "text": [ + ":89: RuntimeWarning: divide by zero encountered in divide\n", + ":89: RuntimeWarning: invalid value encountered in divide\n" + ] + }, + { + "name": "stdout", + "output_type": "stream", + "text": [ + "N_contact_pairs = 1295\n", + "N_noncontact_cell_pairs = 1295\n" + ] + }, + { + "name": "stderr", + "output_type": "stream", + "text": [ + ":89: RuntimeWarning: divide by zero encountered in divide\n", + ":89: RuntimeWarning: invalid value encountered in divide\n" + ] + }, + { + "name": "stdout", + "output_type": "stream", + "text": [ + "N_contact_pairs = 1295\n", + "N_noncontact_cell_pairs = 1295\n", + "Ependymal NN Hypendymal NN\n", + "N_contact_pairs = 84\n", + "N_noncontact_cell_pairs = 84\n", + "N_contact_pairs = 84\n", + "N_noncontact_cell_pairs = 84\n", + "Astro-TE NN SMC NN\n" + ] + }, + { + "name": "stderr", + "output_type": "stream", + "text": [ + ":89: RuntimeWarning: divide by zero encountered in divide\n", + ":89: RuntimeWarning: invalid value encountered in divide\n", + ":89: RuntimeWarning: divide by zero encountered in divide\n", + ":89: RuntimeWarning: invalid value encountered in divide\n", + ":89: RuntimeWarning: divide by zero encountered in divide\n", + ":89: RuntimeWarning: invalid value encountered in divide\n" + ] + }, + { + "name": "stdout", + "output_type": "stream", + "text": [ + "N_contact_pairs = 454\n", + "N_noncontact_cell_pairs = 454\n" + ] + }, + { + "name": "stderr", + "output_type": "stream", + "text": [ + ":89: RuntimeWarning: divide by zero encountered in divide\n", + ":89: RuntimeWarning: invalid value encountered in divide\n" + ] + }, + { + "name": "stdout", + "output_type": "stream", + "text": [ + "N_contact_pairs = 454\n", + "N_noncontact_cell_pairs = 454\n", + "BAM NN Microglia NN\n" + ] + }, + { + "name": "stderr", + "output_type": "stream", + "text": [ + ":89: RuntimeWarning: divide by zero encountered in divide\n", + ":89: RuntimeWarning: invalid value encountered in divide\n" + ] + }, + { + "name": "stdout", + "output_type": "stream", + "text": [ + "N_contact_pairs = 234\n", + "N_noncontact_cell_pairs = 234\n" + ] + }, + { + "name": "stderr", + "output_type": "stream", + "text": [ + ":89: RuntimeWarning: divide by zero encountered in divide\n", + ":89: RuntimeWarning: invalid value encountered in divide\n" + ] + }, + { + "name": "stdout", + "output_type": "stream", + "text": [ + "N_contact_pairs = 234\n", + "N_noncontact_cell_pairs = 234\n", + "ABC NN Lymphoid NN\n", + "N_contact_pairs = 75\n", + "N_noncontact_cell_pairs = 75\n", + "N_contact_pairs = 75\n", + "N_noncontact_cell_pairs = 75\n", + "SPVC Ccdc172 Glut SPVC Ccdc172 Glut\n", + "N_contact_pairs = 37\n", + "N_noncontact_cell_pairs = 37\n", + "Astro-TE NN BAM NN\n" + ] + }, + { + "name": "stderr", + "output_type": "stream", + "text": [ + ":89: RuntimeWarning: divide by zero encountered in divide\n", + ":89: RuntimeWarning: invalid value encountered in divide\n", + ":89: RuntimeWarning: divide by zero encountered in divide\n", + ":89: RuntimeWarning: invalid value encountered in divide\n", + ":89: RuntimeWarning: divide by zero encountered in divide\n", + ":89: RuntimeWarning: invalid value encountered in divide\n", + ":89: RuntimeWarning: divide by zero encountered in divide\n", + ":89: RuntimeWarning: invalid value encountered in divide\n" + ] + }, + { + "name": "stdout", + "output_type": "stream", + "text": [ + "N_contact_pairs = 294\n", + "N_noncontact_cell_pairs = 294\n" + ] + }, + { + "name": "stderr", + "output_type": "stream", + "text": [ + ":89: RuntimeWarning: divide by zero encountered in divide\n", + ":89: RuntimeWarning: invalid value encountered in divide\n" + ] + }, + { + "name": "stdout", + "output_type": "stream", + "text": [ + "N_contact_pairs = 294\n", + "N_noncontact_cell_pairs = 294\n", + "Lymphoid NN Peri NN\n" + ] + }, + { + "name": "stderr", + "output_type": "stream", + "text": [ + ":89: RuntimeWarning: divide by zero encountered in divide\n", + ":89: RuntimeWarning: invalid value encountered in divide\n", + ":89: RuntimeWarning: divide by zero encountered in divide\n", + ":89: RuntimeWarning: invalid value encountered in divide\n" + ] + }, + { + "name": "stdout", + "output_type": "stream", + "text": [ + "N_contact_pairs = 58\n", + "N_noncontact_cell_pairs = 58\n", + "N_contact_pairs = 58\n", + "N_noncontact_cell_pairs = 58\n", + "OPC NN Peri NN\n" + ] + }, + { + "name": "stderr", + "output_type": "stream", + "text": [ + ":89: RuntimeWarning: divide by zero encountered in divide\n", + ":89: RuntimeWarning: invalid value encountered in divide\n" + ] + }, + { + "name": "stdout", + "output_type": "stream", + "text": [ + "N_contact_pairs = 851\n", + "N_noncontact_cell_pairs = 851\n" + ] + }, + { + "name": "stderr", + "output_type": "stream", + "text": [ + ":89: RuntimeWarning: divide by zero encountered in divide\n", + ":89: RuntimeWarning: invalid value encountered in divide\n" + ] + }, + { + "name": "stdout", + "output_type": "stream", + "text": [ + "N_contact_pairs = 851\n", + "N_noncontact_cell_pairs = 851\n", + "Lymphoid NN Microglia NN\n" + ] + }, + { + "name": "stderr", + "output_type": "stream", + "text": [ + ":89: RuntimeWarning: divide by zero encountered in divide\n", + ":89: RuntimeWarning: invalid value encountered in divide\n" + ] + }, + { + "name": "stdout", + "output_type": "stream", + "text": [ + "N_contact_pairs = 99\n", + "N_noncontact_cell_pairs = 99\n" + ] + }, + { + "name": "stderr", + "output_type": "stream", + "text": [ + ":89: RuntimeWarning: divide by zero encountered in divide\n", + ":89: RuntimeWarning: invalid value encountered in divide\n" + ] + }, + { + "name": "stdout", + "output_type": "stream", + "text": [ + "N_contact_pairs = 99\n", + "N_noncontact_cell_pairs = 99\n", + "Bergmann NN Peri NN\n", + "N_contact_pairs = 99\n", + "N_noncontact_cell_pairs = 99\n" + ] + }, + { + "name": "stderr", + "output_type": "stream", + "text": [ + ":89: RuntimeWarning: divide by zero encountered in divide\n", + ":89: RuntimeWarning: invalid value encountered in divide\n", + ":89: RuntimeWarning: divide by zero encountered in divide\n", + ":89: RuntimeWarning: invalid value encountered in divide\n" + ] + }, + { + "name": "stdout", + "output_type": "stream", + "text": [ + "N_contact_pairs = 99\n", + "N_noncontact_cell_pairs = 99\n", + "OEC NN Oligo NN\n" + ] + }, + { + "name": "stderr", + "output_type": "stream", + "text": [ + ":89: RuntimeWarning: divide by zero encountered in divide\n", + ":89: RuntimeWarning: invalid value encountered in divide\n" + ] + }, + { + "name": "stdout", + "output_type": "stream", + "text": [ + "N_contact_pairs = 196\n", + "N_noncontact_cell_pairs = 196\n" + ] + }, + { + "name": "stderr", + "output_type": "stream", + "text": [ + ":89: RuntimeWarning: divide by zero encountered in divide\n", + ":89: RuntimeWarning: invalid value encountered in divide\n" + ] + }, + { + "name": "stdout", + "output_type": "stream", + "text": [ + "N_contact_pairs = 196\n", + "N_noncontact_cell_pairs = 196\n" + ] + }, + { + "name": "stderr", + "output_type": "stream", + "text": [ + ":89: RuntimeWarning: divide by zero encountered in divide\n", + ":89: RuntimeWarning: invalid value encountered in divide\n", + ":89: RuntimeWarning: divide by zero encountered in divide\n", + ":89: RuntimeWarning: invalid value encountered in divide\n", + ":89: RuntimeWarning: divide by zero encountered in divide\n", + ":89: RuntimeWarning: invalid value encountered in divide\n" + ] + }, + { + "name": "stdout", + "output_type": "stream", + "text": [ + "Astro-CB NN Astro-CB NN\n", + "N_contact_pairs = 194\n", + "N_noncontact_cell_pairs = 194\n", + "CHOR NN Peri NN\n", + "N_contact_pairs = 178\n", + "N_noncontact_cell_pairs = 178\n", + "N_contact_pairs = 178\n", + "N_noncontact_cell_pairs = 178\n", + "DC NN Endo NN\n", + "N_contact_pairs = 72\n", + "N_noncontact_cell_pairs = 72\n" + ] + }, + { + "name": "stderr", + "output_type": "stream", + "text": [ + ":89: RuntimeWarning: divide by zero encountered in divide\n", + ":89: RuntimeWarning: invalid value encountered in divide\n", + ":89: RuntimeWarning: divide by zero encountered in divide\n", + ":89: RuntimeWarning: invalid value encountered in divide\n" + ] + }, + { + "name": "stdout", + "output_type": "stream", + "text": [ + "N_contact_pairs = 72\n", + "N_noncontact_cell_pairs = 72\n", + "ABC NN Astro-TE NN\n" + ] + }, + { + "name": "stderr", + "output_type": "stream", + "text": [ + ":89: RuntimeWarning: divide by zero encountered in divide\n", + ":89: RuntimeWarning: invalid value encountered in divide\n" + ] + }, + { + "name": "stdout", + "output_type": "stream", + "text": [ + "N_contact_pairs = 91\n", + "N_noncontact_cell_pairs = 91\n" + ] + }, + { + "name": "stderr", + "output_type": "stream", + "text": [ + ":89: RuntimeWarning: divide by zero encountered in divide\n", + ":89: RuntimeWarning: invalid value encountered in divide\n" + ] + }, + { + "name": "stdout", + "output_type": "stream", + "text": [ + "N_contact_pairs = 91\n", + "N_noncontact_cell_pairs = 91\n", + "BAM NN Lymphoid NN\n", + "N_contact_pairs = 53\n", + "N_noncontact_cell_pairs = 53\n" + ] + }, + { + "name": "stderr", + "output_type": "stream", + "text": [ + ":89: RuntimeWarning: divide by zero encountered in divide\n", + ":89: RuntimeWarning: invalid value encountered in divide\n", + ":89: RuntimeWarning: divide by zero encountered in divide\n", + ":89: RuntimeWarning: invalid value encountered in divide\n", + ":89: RuntimeWarning: divide by zero encountered in divide\n", + ":89: RuntimeWarning: invalid value encountered in divide\n", + ":89: RuntimeWarning: divide by zero encountered in divide\n", + ":89: RuntimeWarning: invalid value encountered in divide\n" + ] + }, + { + "name": "stdout", + "output_type": "stream", + "text": [ + "N_contact_pairs = 53\n", + "N_noncontact_cell_pairs = 53\n", + "CBN Dmbx1 Gaba CBN Dmbx1 Gaba\n", + "N_contact_pairs = 101\n", + "N_noncontact_cell_pairs = 101\n", + "Ependymal NN VLMC NN\n", + "N_contact_pairs = 585\n", + "N_noncontact_cell_pairs = 585\n" + ] + }, + { + "name": "stderr", + "output_type": "stream", + "text": [ + ":89: RuntimeWarning: divide by zero encountered in divide\n", + ":89: RuntimeWarning: invalid value encountered in divide\n" + ] + }, + { + "name": "stdout", + "output_type": "stream", + "text": [ + "N_contact_pairs = 585\n", + "N_noncontact_cell_pairs = 585\n", + "OB-STR-CTX Inh IMN OPC NN\n" + ] + }, + { + "name": "stderr", + "output_type": "stream", + "text": [ + ":89: RuntimeWarning: divide by zero encountered in divide\n", + ":89: RuntimeWarning: invalid value encountered in divide\n" + ] + }, + { + "name": "stdout", + "output_type": "stream", + "text": [ + "N_contact_pairs = 1149\n", + "N_noncontact_cell_pairs = 1149\n" + ] + }, + { + "name": "stderr", + "output_type": "stream", + "text": [ + ":89: RuntimeWarning: divide by zero encountered in divide\n", + ":89: RuntimeWarning: invalid value encountered in divide\n" + ] + }, + { + "name": "stdout", + "output_type": "stream", + "text": [ + "N_contact_pairs = 1149\n", + "N_noncontact_cell_pairs = 1149\n", + "Astro-CB NN OPC NN\n", + "N_contact_pairs = 160\n", + "N_noncontact_cell_pairs = 160\n" + ] + }, + { + "name": "stderr", + "output_type": "stream", + "text": [ + ":89: RuntimeWarning: divide by zero encountered in divide\n", + ":89: RuntimeWarning: invalid value encountered in divide\n", + ":89: RuntimeWarning: divide by zero encountered in divide\n", + ":89: RuntimeWarning: invalid value encountered in divide\n" + ] + }, + { + "name": "stdout", + "output_type": "stream", + "text": [ + "N_contact_pairs = 160\n", + "N_noncontact_cell_pairs = 160\n", + "CBN Dmbx1 Gaba Oligo NN\n" + ] + }, + { + "name": "stderr", + "output_type": "stream", + "text": [ + ":89: RuntimeWarning: divide by zero encountered in divide\n", + ":89: RuntimeWarning: invalid value encountered in divide\n" + ] + }, + { + "name": "stdout", + "output_type": "stream", + "text": [ + "N_contact_pairs = 1010\n", + "N_noncontact_cell_pairs = 1010\n" + ] + }, + { + "name": "stderr", + "output_type": "stream", + "text": [ + ":89: RuntimeWarning: divide by zero encountered in divide\n", + ":89: RuntimeWarning: invalid value encountered in divide\n" + ] + }, + { + "name": "stdout", + "output_type": "stream", + "text": [ + "N_contact_pairs = 1010\n", + "N_noncontact_cell_pairs = 1010\n" + ] + }, + { + "name": "stderr", + "output_type": "stream", + "text": [ + ":89: RuntimeWarning: divide by zero encountered in divide\n", + ":89: RuntimeWarning: invalid value encountered in divide\n", + ":89: RuntimeWarning: divide by zero encountered in divide\n", + ":89: RuntimeWarning: invalid value encountered in divide\n" + ] + }, + { + "name": "stdout", + "output_type": "stream", + "text": [ + "Astro-CB NN Microglia NN\n", + "N_contact_pairs = 161\n", + "N_noncontact_cell_pairs = 161\n", + "N_contact_pairs = 161\n", + "N_noncontact_cell_pairs = 161\n", + "OEC NN OPC NN\n", + "N_contact_pairs = 249\n", + "N_noncontact_cell_pairs = 249\n" + ] + }, + { + "name": "stderr", + "output_type": "stream", + "text": [ + ":89: RuntimeWarning: divide by zero encountered in divide\n", + ":89: RuntimeWarning: invalid value encountered in divide\n", + ":89: RuntimeWarning: divide by zero encountered in divide\n", + ":89: RuntimeWarning: invalid value encountered in divide\n" + ] + }, + { + "name": "stdout", + "output_type": "stream", + "text": [ + "N_contact_pairs = 249\n", + "N_noncontact_cell_pairs = 249\n", + "Astro-TE NN OEC NN\n" + ] + }, + { + "name": "stderr", + "output_type": "stream", + "text": [ + ":89: RuntimeWarning: divide by zero encountered in divide\n", + ":89: RuntimeWarning: invalid value encountered in divide\n" + ] + }, + { + "name": "stdout", + "output_type": "stream", + "text": [ + "N_contact_pairs = 127\n", + "N_noncontact_cell_pairs = 127\n" + ] + }, + { + "name": "stderr", + "output_type": "stream", + "text": [ + ":89: RuntimeWarning: divide by zero encountered in divide\n", + ":89: RuntimeWarning: invalid value encountered in divide\n" + ] + }, + { + "name": "stdout", + "output_type": "stream", + "text": [ + "N_contact_pairs = 127\n", + "N_noncontact_cell_pairs = 127\n", + "Astro-CB NN VLMC NN\n" + ] + }, + { + "name": "stderr", + "output_type": "stream", + "text": [ + ":89: RuntimeWarning: divide by zero encountered in divide\n", + ":89: RuntimeWarning: invalid value encountered in divide\n", + ":89: RuntimeWarning: divide by zero encountered in divide\n", + ":89: RuntimeWarning: invalid value encountered in divide\n" + ] + }, + { + "name": "stdout", + "output_type": "stream", + "text": [ + "N_contact_pairs = 67\n", + "N_noncontact_cell_pairs = 67\n", + "N_contact_pairs = 67\n", + "N_noncontact_cell_pairs = 67\n" + ] + }, + { + "name": "stderr", + "output_type": "stream", + "text": [ + ":89: RuntimeWarning: divide by zero encountered in divide\n", + ":89: RuntimeWarning: invalid value encountered in divide\n", + ":89: RuntimeWarning: divide by zero encountered in divide\n", + ":89: RuntimeWarning: invalid value encountered in divide\n" + ] + }, + { + "name": "stdout", + "output_type": "stream", + "text": [ + "L6b CTX Glut Peri NN\n", + "N_contact_pairs = 456\n", + "N_noncontact_cell_pairs = 456\n", + "N_contact_pairs = 456\n", + "N_noncontact_cell_pairs = 456\n", + "Astro-CB NN Peri NN\n", + "N_contact_pairs = 112\n", + "N_noncontact_cell_pairs = 112\n" + ] + }, + { + "name": "stderr", + "output_type": "stream", + "text": [ + ":89: RuntimeWarning: divide by zero encountered in divide\n", + ":89: RuntimeWarning: invalid value encountered in divide\n", + ":89: RuntimeWarning: divide by zero encountered in divide\n", + ":89: RuntimeWarning: invalid value encountered in divide\n" + ] + }, + { + "name": "stdout", + "output_type": "stream", + "text": [ + "N_contact_pairs = 112\n", + "N_noncontact_cell_pairs = 112\n", + "OEC NN Tanycyte NN\n", + "N_contact_pairs = 93\n", + "N_noncontact_cell_pairs = 93\n" + ] + }, + { + "name": "stderr", + "output_type": "stream", + "text": [ + ":89: RuntimeWarning: divide by zero encountered in divide\n", + ":89: RuntimeWarning: invalid value encountered in divide\n", + ":89: RuntimeWarning: divide by zero encountered in divide\n", + ":89: RuntimeWarning: invalid value encountered in divide\n", + ":89: RuntimeWarning: divide by zero encountered in divide\n", + ":89: RuntimeWarning: invalid value encountered in divide\n" + ] + }, + { + "name": "stdout", + "output_type": "stream", + "text": [ + "N_contact_pairs = 93\n", + "N_noncontact_cell_pairs = 93\n", + "OB-STR-CTX Inh IMN Peri NN\n", + "N_contact_pairs = 448\n", + "N_noncontact_cell_pairs = 448\n" + ] + }, + { + "name": "stderr", + "output_type": "stream", + "text": [ + ":89: RuntimeWarning: divide by zero encountered in divide\n", + ":89: RuntimeWarning: invalid value encountered in divide\n" + ] + }, + { + "name": "stdout", + "output_type": "stream", + "text": [ + "N_contact_pairs = 448\n", + "N_noncontact_cell_pairs = 448\n", + "OEC NN SMC NN\n", + "N_contact_pairs = 598\n", + "N_noncontact_cell_pairs = 598\n" + ] + }, + { + "name": "stderr", + "output_type": "stream", + "text": [ + ":89: RuntimeWarning: divide by zero encountered in divide\n", + ":89: RuntimeWarning: invalid value encountered in divide\n", + ":89: RuntimeWarning: divide by zero encountered in divide\n", + ":89: RuntimeWarning: invalid value encountered in divide\n" + ] + }, + { + "name": "stdout", + "output_type": "stream", + "text": [ + "N_contact_pairs = 598\n", + "N_noncontact_cell_pairs = 598\n", + "CHOR NN SMC NN\n", + "N_contact_pairs = 90\n", + "N_noncontact_cell_pairs = 90\n", + "N_contact_pairs = 90\n", + "N_noncontact_cell_pairs = 90\n" + ] + }, + { + "name": "stderr", + "output_type": "stream", + "text": [ + ":89: RuntimeWarning: divide by zero encountered in divide\n", + ":89: RuntimeWarning: invalid value encountered in divide\n", + ":89: RuntimeWarning: divide by zero encountered in divide\n", + ":89: RuntimeWarning: invalid value encountered in divide\n", + ":89: RuntimeWarning: divide by zero encountered in divide\n", + ":89: RuntimeWarning: invalid value encountered in divide\n" + ] + }, + { + "name": "stdout", + "output_type": "stream", + "text": [ + "CBN Dmbx1 Gaba Endo NN\n", + "N_contact_pairs = 349\n", + "N_noncontact_cell_pairs = 349\n" + ] + }, + { + "name": "stderr", + "output_type": "stream", + "text": [ + ":89: RuntimeWarning: divide by zero encountered in divide\n", + ":89: RuntimeWarning: invalid value encountered in divide\n" + ] + }, + { + "name": "stdout", + "output_type": "stream", + "text": [ + "N_contact_pairs = 349\n", + "N_noncontact_cell_pairs = 349\n", + "Astro-TE NN Lymphoid NN\n" + ] + }, + { + "name": "stderr", + "output_type": "stream", + "text": [ + ":89: RuntimeWarning: divide by zero encountered in divide\n", + ":89: RuntimeWarning: invalid value encountered in divide\n" + ] + }, + { + "name": "stdout", + "output_type": "stream", + "text": [ + "N_contact_pairs = 89\n", + "N_noncontact_cell_pairs = 89\n" + ] + }, + { + "name": "stderr", + "output_type": "stream", + "text": [ + ":89: RuntimeWarning: divide by zero encountered in divide\n", + ":89: RuntimeWarning: invalid value encountered in divide\n" + ] + }, + { + "name": "stdout", + "output_type": "stream", + "text": [ + "N_contact_pairs = 89\n", + "N_noncontact_cell_pairs = 89\n", + "CHOR NN Ependymal NN\n", + "N_contact_pairs = 1176\n", + "N_noncontact_cell_pairs = 1176\n" + ] + }, + { + "name": "stderr", + "output_type": "stream", + "text": [ + ":89: RuntimeWarning: divide by zero encountered in divide\n", + ":89: RuntimeWarning: invalid value encountered in divide\n", + ":89: RuntimeWarning: divide by zero encountered in divide\n", + ":89: RuntimeWarning: invalid value encountered in divide\n", + ":89: RuntimeWarning: divide by zero encountered in divide\n", + ":89: RuntimeWarning: invalid value encountered in divide\n" + ] + }, + { + "name": "stdout", + "output_type": "stream", + "text": [ + "N_contact_pairs = 1176\n", + "N_noncontact_cell_pairs = 1176\n", + "Astro-CB NN OEC NN\n", + "N_contact_pairs = 56\n", + "N_noncontact_cell_pairs = 56\n" + ] + }, + { + "name": "stderr", + "output_type": "stream", + "text": [ + ":89: RuntimeWarning: divide by zero encountered in divide\n", + ":89: RuntimeWarning: invalid value encountered in divide\n", + ":89: RuntimeWarning: divide by zero encountered in divide\n", + ":89: RuntimeWarning: invalid value encountered in divide\n" + ] + }, + { + "name": "stdout", + "output_type": "stream", + "text": [ + "N_contact_pairs = 56\n", + "N_noncontact_cell_pairs = 56\n", + "L6b CTX Glut OPC NN\n", + "N_contact_pairs = 944\n", + "N_noncontact_cell_pairs = 944\n" + ] + }, + { + "name": "stderr", + "output_type": "stream", + "text": [ + ":89: RuntimeWarning: divide by zero encountered in divide\n", + ":89: RuntimeWarning: invalid value encountered in divide\n" + ] + }, + { + "name": "stdout", + "output_type": "stream", + "text": [ + "N_contact_pairs = 944\n", + "N_noncontact_cell_pairs = 944\n", + "Lymphoid NN OEC NN\n" + ] + }, + { + "name": "stderr", + "output_type": "stream", + "text": [ + ":89: RuntimeWarning: divide by zero encountered in divide\n", + ":89: RuntimeWarning: invalid value encountered in divide\n" + ] + }, + { + "name": "stdout", + "output_type": "stream", + "text": [ + "N_contact_pairs = 369\n", + "N_noncontact_cell_pairs = 369\n", + "N_contact_pairs = 369\n", + "N_noncontact_cell_pairs = 369\n" + ] + }, + { + "name": "stderr", + "output_type": "stream", + "text": [ + ":89: RuntimeWarning: divide by zero encountered in divide\n", + ":89: RuntimeWarning: invalid value encountered in divide\n", + ":89: RuntimeWarning: divide by zero encountered in divide\n", + ":89: RuntimeWarning: invalid value encountered in divide\n" + ] + }, + { + "name": "stdout", + "output_type": "stream", + "text": [ + "BAM NN Ependymal NN\n", + "N_contact_pairs = 104\n", + "N_noncontact_cell_pairs = 104\n", + "N_contact_pairs = 104\n", + "N_noncontact_cell_pairs = 104\n", + "CBN Neurod2 Pvalb Glut Oligo NN\n" + ] + }, + { + "name": "stderr", + "output_type": "stream", + "text": [ + ":89: RuntimeWarning: divide by zero encountered in divide\n", + ":89: RuntimeWarning: invalid value encountered in divide\n", + ":89: RuntimeWarning: divide by zero encountered in divide\n", + ":89: RuntimeWarning: invalid value encountered in divide\n" + ] + }, + { + "name": "stdout", + "output_type": "stream", + "text": [ + "N_contact_pairs = 421\n", + "N_noncontact_cell_pairs = 421\n" + ] + }, + { + "name": "stderr", + "output_type": "stream", + "text": [ + ":89: RuntimeWarning: divide by zero encountered in divide\n", + ":89: RuntimeWarning: invalid value encountered in divide\n" + ] + }, + { + "name": "stdout", + "output_type": "stream", + "text": [ + "N_contact_pairs = 421\n", + "N_noncontact_cell_pairs = 421\n" + ] + }, + { + "name": "stderr", + "output_type": "stream", + "text": [ + ":89: RuntimeWarning: divide by zero encountered in divide\n", + ":89: RuntimeWarning: invalid value encountered in divide\n", + ":89: RuntimeWarning: divide by zero encountered in divide\n", + ":89: RuntimeWarning: invalid value encountered in divide\n" + ] + }, + { + "name": "stdout", + "output_type": "stream", + "text": [ + "ABC NN Peri NN\n", + "N_contact_pairs = 80\n", + "N_noncontact_cell_pairs = 80\n", + "N_contact_pairs = 80\n", + "N_noncontact_cell_pairs = 80\n", + "Ependymal NN Peri NN\n", + "N_contact_pairs = 185\n", + "N_noncontact_cell_pairs = 185\n" + ] + }, + { + "name": "stderr", + "output_type": "stream", + "text": [ + ":89: RuntimeWarning: divide by zero encountered in divide\n", + ":89: RuntimeWarning: invalid value encountered in divide\n", + ":89: RuntimeWarning: divide by zero encountered in divide\n", + ":89: RuntimeWarning: invalid value encountered in divide\n" + ] + }, + { + "name": "stdout", + "output_type": "stream", + "text": [ + "N_contact_pairs = 185\n", + "N_noncontact_cell_pairs = 185\n", + "CBN Dmbx1 Gaba OPC NN\n", + "N_contact_pairs = 80\n", + "N_noncontact_cell_pairs = 80\n" + ] + }, + { + "name": "stderr", + "output_type": "stream", + "text": [ + ":89: RuntimeWarning: divide by zero encountered in divide\n", + ":89: RuntimeWarning: invalid value encountered in divide\n", + ":89: RuntimeWarning: divide by zero encountered in divide\n", + ":89: RuntimeWarning: invalid value encountered in divide\n" + ] + }, + { + "name": "stdout", + "output_type": "stream", + "text": [ + "N_contact_pairs = 80\n", + "N_noncontact_cell_pairs = 80\n", + "Microglia NN SMC NN\n" + ] + }, + { + "name": "stderr", + "output_type": "stream", + "text": [ + ":89: RuntimeWarning: divide by zero encountered in divide\n", + ":89: RuntimeWarning: invalid value encountered in divide\n" + ] + }, + { + "name": "stdout", + "output_type": "stream", + "text": [ + "N_contact_pairs = 256\n", + "N_noncontact_cell_pairs = 256\n" + ] + }, + { + "name": "stderr", + "output_type": "stream", + "text": [ + ":89: RuntimeWarning: divide by zero encountered in divide\n", + ":89: RuntimeWarning: invalid value encountered in divide\n" + ] + }, + { + "name": "stdout", + "output_type": "stream", + "text": [ + "N_contact_pairs = 256\n", + "N_noncontact_cell_pairs = 256\n", + "CBN Neurod2 Pvalb Glut Endo NN\n", + "N_contact_pairs = 131\n", + "N_noncontact_cell_pairs = 131\n" + ] + }, + { + "name": "stderr", + "output_type": "stream", + "text": [ + ":89: RuntimeWarning: divide by zero encountered in divide\n", + ":89: RuntimeWarning: invalid value encountered in divide\n", + ":89: RuntimeWarning: divide by zero encountered in divide\n", + ":89: RuntimeWarning: invalid value encountered in divide\n" + ] + }, + { + "name": "stdout", + "output_type": "stream", + "text": [ + "N_contact_pairs = 131\n", + "N_noncontact_cell_pairs = 131\n", + "Peri NN SMC NN\n" + ] + }, + { + "name": "stderr", + "output_type": "stream", + "text": [ + ":89: RuntimeWarning: divide by zero encountered in divide\n", + ":89: RuntimeWarning: invalid value encountered in divide\n", + ":89: RuntimeWarning: divide by zero encountered in divide\n", + ":89: RuntimeWarning: invalid value encountered in divide\n" + ] + }, + { + "name": "stdout", + "output_type": "stream", + "text": [ + "N_contact_pairs = 118\n", + "N_noncontact_cell_pairs = 118\n", + "N_contact_pairs = 118\n", + "N_noncontact_cell_pairs = 118\n" + ] + }, + { + "name": "stderr", + "output_type": "stream", + "text": [ + ":89: RuntimeWarning: divide by zero encountered in divide\n", + ":89: RuntimeWarning: invalid value encountered in divide\n" + ] + }, + { + "name": "stdout", + "output_type": "stream", + "text": [ + "Hippocampus\n" + ] + }, + { + "name": "stderr", + "output_type": "stream", + "text": [ + ":25: ImplicitModificationWarning: Trying to modify attribute `.obs` of view, initializing view as actual.\n", + ":28: ImplicitModificationWarning: Trying to modify attribute `.obs` of view, initializing view as actual.\n" + ] + }, + { + "name": "stdout", + "output_type": "stream", + "text": [ + "DG Glut DG Glut\n", + "N_contact_pairs = 655517\n", + "N_noncontact_cell_pairs = 240471\n" + ] + }, + { + "name": "stderr", + "output_type": "stream", + "text": [ + ":89: RuntimeWarning: divide by zero encountered in divide\n", + ":89: RuntimeWarning: invalid value encountered in divide\n" + ] + }, + { + "name": "stdout", + "output_type": "stream", + "text": [ + "CA1-ProS Glut CA1-ProS Glut\n", + "N_contact_pairs = 210506\n", + "N_noncontact_cell_pairs = 210506\n" + ] + }, + { + "name": "stderr", + "output_type": "stream", + "text": [ + ":89: RuntimeWarning: divide by zero encountered in divide\n", + ":89: RuntimeWarning: invalid value encountered in divide\n" + ] + }, + { + "name": "stdout", + "output_type": "stream", + "text": [ + "VLMC NN VLMC NN\n", + "N_contact_pairs = 11644\n", + "N_noncontact_cell_pairs = 11644\n" + ] + }, + { + "name": "stderr", + "output_type": "stream", + "text": [ + ":89: RuntimeWarning: divide by zero encountered in divide\n", + ":89: RuntimeWarning: invalid value encountered in divide\n" + ] + }, + { + "name": "stdout", + "output_type": "stream", + "text": [ + "SMC NN SMC NN\n", + "N_contact_pairs = 3415\n", + "N_noncontact_cell_pairs = 3415\n", + "ABC NN ABC NN\n", + "N_contact_pairs = 2325\n", + "N_noncontact_cell_pairs = 2325\n" + ] + }, + { + "name": "stderr", + "output_type": "stream", + "text": [ + ":89: RuntimeWarning: divide by zero encountered in divide\n", + ":89: RuntimeWarning: invalid value encountered in divide\n", + ":89: RuntimeWarning: divide by zero encountered in divide\n", + ":89: RuntimeWarning: invalid value encountered in divide\n" + ] + }, + { + "name": "stdout", + "output_type": "stream", + "text": [ + "CA3 Glut CA3 Glut\n", + "N_contact_pairs = 43712\n", + "N_noncontact_cell_pairs = 43712\n" + ] + }, + { + "name": "stderr", + "output_type": "stream", + "text": [ + ":89: RuntimeWarning: divide by zero encountered in divide\n", + ":89: RuntimeWarning: invalid value encountered in divide\n" + ] + }, + { + "name": "stdout", + "output_type": "stream", + "text": [ + "SMC NN VLMC NN\n", + "N_contact_pairs = 5007\n", + "N_noncontact_cell_pairs = 5007\n" + ] + }, + { + "name": "stderr", + "output_type": "stream", + "text": [ + ":89: RuntimeWarning: divide by zero encountered in divide\n", + ":89: RuntimeWarning: invalid value encountered in divide\n" + ] + }, + { + "name": "stdout", + "output_type": "stream", + "text": [ + "N_contact_pairs = 5007\n", + "N_noncontact_cell_pairs = 5007\n", + "ABC NN VLMC NN\n" + ] + }, + { + "name": "stderr", + "output_type": "stream", + "text": [ + ":89: RuntimeWarning: divide by zero encountered in divide\n", + ":89: RuntimeWarning: invalid value encountered in divide\n" + ] + }, + { + "name": "stdout", + "output_type": "stream", + "text": [ + "N_contact_pairs = 3976\n", + "N_noncontact_cell_pairs = 3976\n" + ] + }, + { + "name": "stderr", + "output_type": "stream", + "text": [ + ":89: RuntimeWarning: divide by zero encountered in divide\n", + ":89: RuntimeWarning: invalid value encountered in divide\n" + ] + }, + { + "name": "stdout", + "output_type": "stream", + "text": [ + "N_contact_pairs = 3976\n", + "N_noncontact_cell_pairs = 3976\n", + "Endo NN SMC NN\n" + ] + }, + { + "name": "stderr", + "output_type": "stream", + "text": [ + ":89: RuntimeWarning: divide by zero encountered in divide\n", + ":89: RuntimeWarning: invalid value encountered in divide\n" + ] + }, + { + "name": "stdout", + "output_type": "stream", + "text": [ + "N_contact_pairs = 6265\n", + "N_noncontact_cell_pairs = 6265\n" + ] + }, + { + "name": "stderr", + "output_type": "stream", + "text": [ + ":89: RuntimeWarning: divide by zero encountered in divide\n", + ":89: RuntimeWarning: invalid value encountered in divide\n" + ] + }, + { + "name": "stdout", + "output_type": "stream", + "text": [ + "N_contact_pairs = 6265\n", + "N_noncontact_cell_pairs = 6265\n" + ] + }, + { + "name": "stderr", + "output_type": "stream", + "text": [ + ":89: RuntimeWarning: divide by zero encountered in divide\n", + ":89: RuntimeWarning: invalid value encountered in divide\n" + ] + }, + { + "name": "stdout", + "output_type": "stream", + "text": [ + "Endo NN VLMC NN\n", + "N_contact_pairs = 11494\n", + "N_noncontact_cell_pairs = 11494\n" + ] + }, + { + "name": "stderr", + "output_type": "stream", + "text": [ + ":89: RuntimeWarning: divide by zero encountered in divide\n", + ":89: RuntimeWarning: invalid value encountered in divide\n" + ] + }, + { + "name": "stdout", + "output_type": "stream", + "text": [ + "N_contact_pairs = 11494\n", + "N_noncontact_cell_pairs = 11494\n" + ] + }, + { + "name": "stderr", + "output_type": "stream", + "text": [ + ":89: RuntimeWarning: divide by zero encountered in divide\n", + ":89: RuntimeWarning: invalid value encountered in divide\n", + ":89: RuntimeWarning: divide by zero encountered in divide\n", + ":89: RuntimeWarning: invalid value encountered in divide\n" + ] + }, + { + "name": "stdout", + "output_type": "stream", + "text": [ + "DG-PIR Ex IMN DG-PIR Ex IMN\n", + "N_contact_pairs = 2555\n", + "N_noncontact_cell_pairs = 2555\n", + "BAM NN VLMC NN\n", + "N_contact_pairs = 2782\n", + "N_noncontact_cell_pairs = 2782\n" + ] + }, + { + "name": "stderr", + "output_type": "stream", + "text": [ + ":89: RuntimeWarning: divide by zero encountered in divide\n", + ":89: RuntimeWarning: invalid value encountered in divide\n", + ":89: RuntimeWarning: divide by zero encountered in divide\n", + ":89: RuntimeWarning: invalid value encountered in divide\n" + ] + }, + { + "name": "stdout", + "output_type": "stream", + "text": [ + "N_contact_pairs = 2782\n", + "N_noncontact_cell_pairs = 2782\n", + "CA2-FC-IG Glut CA2-FC-IG Glut\n", + "N_contact_pairs = 3942\n", + "N_noncontact_cell_pairs = 3942\n" + ] + }, + { + "name": "stderr", + "output_type": "stream", + "text": [ + ":89: RuntimeWarning: divide by zero encountered in divide\n", + ":89: RuntimeWarning: invalid value encountered in divide\n" + ] + }, + { + "name": "stdout", + "output_type": "stream", + "text": [ + "Endo NN Endo NN\n", + "N_contact_pairs = 24200\n", + "N_noncontact_cell_pairs = 24200\n" + ] + }, + { + "name": "stderr", + "output_type": "stream", + "text": [ + ":89: RuntimeWarning: divide by zero encountered in divide\n", + ":89: RuntimeWarning: invalid value encountered in divide\n" + ] + }, + { + "name": "stdout", + "output_type": "stream", + "text": [ + "L2 IT PPP-APr Glut L2 IT PPP-APr Glut\n", + "N_contact_pairs = 6899\n", + "N_noncontact_cell_pairs = 6899\n" + ] + }, + { + "name": "stderr", + "output_type": "stream", + "text": [ + ":89: RuntimeWarning: divide by zero encountered in divide\n", + ":89: RuntimeWarning: invalid value encountered in divide\n" + ] + }, + { + "name": "stdout", + "output_type": "stream", + "text": [ + "Oligo NN Oligo NN\n", + "N_contact_pairs = 19976\n", + "N_noncontact_cell_pairs = 19976\n" + ] + }, + { + "name": "stderr", + "output_type": "stream", + "text": [ + ":89: RuntimeWarning: divide by zero encountered in divide\n", + ":89: RuntimeWarning: invalid value encountered in divide\n" + ] + }, + { + "name": "stdout", + "output_type": "stream", + "text": [ + "Endo NN Peri NN\n", + "N_contact_pairs = 8088\n", + "N_noncontact_cell_pairs = 8088\n" + ] + }, + { + "name": "stderr", + "output_type": "stream", + "text": [ + ":89: RuntimeWarning: divide by zero encountered in divide\n", + ":89: RuntimeWarning: invalid value encountered in divide\n" + ] + }, + { + "name": "stdout", + "output_type": "stream", + "text": [ + "N_contact_pairs = 8088\n", + "N_noncontact_cell_pairs = 8088\n" + ] + }, + { + "name": "stderr", + "output_type": "stream", + "text": [ + ":89: RuntimeWarning: divide by zero encountered in divide\n", + ":89: RuntimeWarning: invalid value encountered in divide\n", + ":89: RuntimeWarning: divide by zero encountered in divide\n", + ":89: RuntimeWarning: invalid value encountered in divide\n" + ] + }, + { + "name": "stdout", + "output_type": "stream", + "text": [ + "Ependymal NN Ependymal NN\n", + "N_contact_pairs = 1752\n", + "N_noncontact_cell_pairs = 990\n", + "L2/3 IT PPP Glut L2/3 IT PPP Glut\n", + "N_contact_pairs = 40232\n", + "N_noncontact_cell_pairs = 40232\n" + ] + }, + { + "name": "stderr", + "output_type": "stream", + "text": [ + ":89: RuntimeWarning: divide by zero encountered in divide\n", + ":89: RuntimeWarning: invalid value encountered in divide\n" + ] + }, + { + "name": "stdout", + "output_type": "stream", + "text": [ + "L6b/CT ENT Glut L6b/CT ENT Glut\n", + "N_contact_pairs = 28167\n", + "N_noncontact_cell_pairs = 28167\n" + ] + }, + { + "name": "stderr", + "output_type": "stream", + "text": [ + ":89: RuntimeWarning: divide by zero encountered in divide\n", + ":89: RuntimeWarning: invalid value encountered in divide\n" + ] + }, + { + "name": "stdout", + "output_type": "stream", + "text": [ + "BAM NN Endo NN\n", + "N_contact_pairs = 2047\n", + "N_noncontact_cell_pairs = 2047\n" + ] + }, + { + "name": "stderr", + "output_type": "stream", + "text": [ + ":89: RuntimeWarning: divide by zero encountered in divide\n", + ":89: RuntimeWarning: invalid value encountered in divide\n" + ] + }, + { + "name": "stdout", + "output_type": "stream", + "text": [ + "N_contact_pairs = 2047\n", + "N_noncontact_cell_pairs = 2047\n", + "BAM NN SMC NN\n" + ] + }, + { + "name": "stderr", + "output_type": "stream", + "text": [ + ":89: RuntimeWarning: divide by zero encountered in divide\n", + ":89: RuntimeWarning: invalid value encountered in divide\n", + ":89: RuntimeWarning: divide by zero encountered in divide\n", + ":89: RuntimeWarning: invalid value encountered in divide\n", + ":89: RuntimeWarning: divide by zero encountered in divide\n", + ":89: RuntimeWarning: invalid value encountered in divide\n" + ] + }, + { + "name": "stdout", + "output_type": "stream", + "text": [ + "N_contact_pairs = 701\n", + "N_noncontact_cell_pairs = 701\n", + "N_contact_pairs = 701\n", + "N_noncontact_cell_pairs = 701\n", + "NP SUB Glut NP SUB Glut\n", + "N_contact_pairs = 3834\n", + "N_noncontact_cell_pairs = 3834\n" + ] + }, + { + "name": "stderr", + "output_type": "stream", + "text": [ + ":89: RuntimeWarning: divide by zero encountered in divide\n", + ":89: RuntimeWarning: invalid value encountered in divide\n", + ":89: RuntimeWarning: divide by zero encountered in divide\n", + ":89: RuntimeWarning: invalid value encountered in divide\n", + ":89: RuntimeWarning: divide by zero encountered in divide\n", + ":89: RuntimeWarning: invalid value encountered in divide\n", + ":89: RuntimeWarning: divide by zero encountered in divide\n", + ":89: RuntimeWarning: invalid value encountered in divide\n" + ] + }, + { + "name": "stdout", + "output_type": "stream", + "text": [ + "ABC NN BAM NN\n", + "N_contact_pairs = 439\n", + "N_noncontact_cell_pairs = 439\n", + "N_contact_pairs = 439\n", + "N_noncontact_cell_pairs = 439\n", + "HPF CR Glut HPF CR Glut\n", + "N_contact_pairs = 671\n", + "N_noncontact_cell_pairs = 671\n", + "Astro-TE NN DG-PIR Ex IMN\n", + "N_contact_pairs = 3696\n", + "N_noncontact_cell_pairs = 3696\n" + ] + }, + { + "name": "stderr", + "output_type": "stream", + "text": [ + ":89: RuntimeWarning: divide by zero encountered in divide\n", + ":89: RuntimeWarning: invalid value encountered in divide\n" + ] + }, + { + "name": "stdout", + "output_type": "stream", + "text": [ + "N_contact_pairs = 3696\n", + "N_noncontact_cell_pairs = 3696\n" + ] + }, + { + "name": "stderr", + "output_type": "stream", + "text": [ + ":89: RuntimeWarning: divide by zero encountered in divide\n", + ":89: RuntimeWarning: invalid value encountered in divide\n" + ] + }, + { + "name": "stdout", + "output_type": "stream", + "text": [ + "Astro-TE NN VLMC NN\n", + "N_contact_pairs = 9098\n", + "N_noncontact_cell_pairs = 9098\n" + ] + }, + { + "name": "stderr", + "output_type": "stream", + "text": [ + ":89: RuntimeWarning: divide by zero encountered in divide\n", + ":89: RuntimeWarning: invalid value encountered in divide\n" + ] + }, + { + "name": "stdout", + "output_type": "stream", + "text": [ + "N_contact_pairs = 9098\n", + "N_noncontact_cell_pairs = 9098\n" + ] + }, + { + "name": "stderr", + "output_type": "stream", + "text": [ + ":89: RuntimeWarning: divide by zero encountered in divide\n", + ":89: RuntimeWarning: invalid value encountered in divide\n" + ] + }, + { + "name": "stdout", + "output_type": "stream", + "text": [ + "DG Glut DG-PIR Ex IMN\n", + "N_contact_pairs = 28921\n", + "N_noncontact_cell_pairs = 28921\n" + ] + }, + { + "name": "stderr", + "output_type": "stream", + "text": [ + ":89: RuntimeWarning: divide by zero encountered in divide\n", + ":89: RuntimeWarning: invalid value encountered in divide\n" + ] + }, + { + "name": "stdout", + "output_type": "stream", + "text": [ + "N_contact_pairs = 28921\n", + "N_noncontact_cell_pairs = 28921\n" + ] + }, + { + "name": "stderr", + "output_type": "stream", + "text": [ + ":89: RuntimeWarning: divide by zero encountered in divide\n", + ":89: RuntimeWarning: invalid value encountered in divide\n" + ] + }, + { + "name": "stdout", + "output_type": "stream", + "text": [ + "Astro-TE NN Oligo NN\n", + "N_contact_pairs = 27065\n", + "N_noncontact_cell_pairs = 27065\n" + ] + }, + { + "name": "stderr", + "output_type": "stream", + "text": [ + ":89: RuntimeWarning: divide by zero encountered in divide\n", + ":89: RuntimeWarning: invalid value encountered in divide\n" + ] + }, + { + "name": "stdout", + "output_type": "stream", + "text": [ + "N_contact_pairs = 27065\n", + "N_noncontact_cell_pairs = 27065\n" + ] + }, + { + "name": "stderr", + "output_type": "stream", + "text": [ + ":89: RuntimeWarning: divide by zero encountered in divide\n", + ":89: RuntimeWarning: invalid value encountered in divide\n" + ] + }, + { + "name": "stdout", + "output_type": "stream", + "text": [ + "CT SUB Glut CT SUB Glut\n", + "N_contact_pairs = 2807\n", + "N_noncontact_cell_pairs = 2807\n", + "CHOR NN CHOR NN\n", + "N_contact_pairs = 1283\n", + "N_noncontact_cell_pairs = 36\n", + "Astro-TE NN Endo NN\n" + ] + }, + { + "name": "stderr", + "output_type": "stream", + "text": [ + ":89: RuntimeWarning: divide by zero encountered in divide\n", + ":89: RuntimeWarning: invalid value encountered in divide\n", + ":89: RuntimeWarning: divide by zero encountered in divide\n", + ":89: RuntimeWarning: invalid value encountered in divide\n" + ] + }, + { + "name": "stdout", + "output_type": "stream", + "text": [ + "N_contact_pairs = 47959\n", + "N_noncontact_cell_pairs = 47959\n" + ] + }, + { + "name": "stderr", + "output_type": "stream", + "text": [ + ":89: RuntimeWarning: divide by zero encountered in divide\n", + ":89: RuntimeWarning: invalid value encountered in divide\n" + ] + }, + { + "name": "stdout", + "output_type": "stream", + "text": [ + "N_contact_pairs = 47959\n", + "N_noncontact_cell_pairs = 47959\n" + ] + }, + { + "name": "stderr", + "output_type": "stream", + "text": [ + ":89: RuntimeWarning: divide by zero encountered in divide\n", + ":89: RuntimeWarning: invalid value encountered in divide\n" + ] + }, + { + "name": "stdout", + "output_type": "stream", + "text": [ + "L5 PPP Glut NP PPP Glut\n", + "N_contact_pairs = 553\n", + "N_noncontact_cell_pairs = 553\n", + "N_contact_pairs = 553\n", + "N_noncontact_cell_pairs = 553\n", + "NP PPP Glut NP PPP Glut\n", + "N_contact_pairs = 573\n", + "N_noncontact_cell_pairs = 573\n", + "Sst Gaba Sst Gaba\n", + "N_contact_pairs = 1401\n", + "N_noncontact_cell_pairs = 1401\n" + ] + }, + { + "name": "stderr", + "output_type": "stream", + "text": [ + ":89: RuntimeWarning: divide by zero encountered in divide\n", + ":89: RuntimeWarning: invalid value encountered in divide\n", + ":89: RuntimeWarning: divide by zero encountered in divide\n", + ":89: RuntimeWarning: invalid value encountered in divide\n", + ":89: RuntimeWarning: divide by zero encountered in divide\n", + ":89: RuntimeWarning: invalid value encountered in divide\n", + ":89: RuntimeWarning: divide by zero encountered in divide\n", + ":89: RuntimeWarning: invalid value encountered in divide\n" + ] + }, + { + "name": "stdout", + "output_type": "stream", + "text": [ + "Astro-TE NN Astro-TE NN\n", + "N_contact_pairs = 36851\n", + "N_noncontact_cell_pairs = 36851\n" + ] + }, + { + "name": "stderr", + "output_type": "stream", + "text": [ + ":89: RuntimeWarning: divide by zero encountered in divide\n", + ":89: RuntimeWarning: invalid value encountered in divide\n" + ] + }, + { + "name": "stdout", + "output_type": "stream", + "text": [ + "BAM NN BAM NN\n", + "N_contact_pairs = 198\n", + "N_noncontact_cell_pairs = 198\n", + "OPC NN OPC NN\n" + ] + }, + { + "name": "stderr", + "output_type": "stream", + "text": [ + ":89: RuntimeWarning: divide by zero encountered in divide\n", + ":89: RuntimeWarning: invalid value encountered in divide\n" + ] + }, + { + "name": "stdout", + "output_type": "stream", + "text": [ + "N_contact_pairs = 2440\n", + "N_noncontact_cell_pairs = 2440\n", + "ENTmv-PA-COAp Glut ENTmv-PA-COAp Glut\n", + "N_contact_pairs = 1260\n", + "N_noncontact_cell_pairs = 1260\n" + ] + }, + { + "name": "stderr", + "output_type": "stream", + "text": [ + ":89: RuntimeWarning: divide by zero encountered in divide\n", + ":89: RuntimeWarning: invalid value encountered in divide\n", + ":89: RuntimeWarning: divide by zero encountered in divide\n", + ":89: RuntimeWarning: invalid value encountered in divide\n", + ":89: RuntimeWarning: divide by zero encountered in divide\n", + ":89: RuntimeWarning: invalid value encountered in divide\n" + ] + }, + { + "name": "stdout", + "output_type": "stream", + "text": [ + "Lymphoid NN VLMC NN\n", + "N_contact_pairs = 240\n", + "N_noncontact_cell_pairs = 240\n", + "N_contact_pairs = 240\n", + "N_noncontact_cell_pairs = 240\n" + ] + }, + { + "name": "stderr", + "output_type": "stream", + "text": [ + ":89: RuntimeWarning: divide by zero encountered in divide\n", + ":89: RuntimeWarning: invalid value encountered in divide\n" + ] + }, + { + "name": "stdout", + "output_type": "stream", + "text": [ + "SUB-ProS Glut SUB-ProS Glut\n", + "N_contact_pairs = 8769\n", + "N_noncontact_cell_pairs = 8769\n" + ] + }, + { + "name": "stderr", + "output_type": "stream", + "text": [ + ":89: RuntimeWarning: divide by zero encountered in divide\n", + ":89: RuntimeWarning: invalid value encountered in divide\n", + ":89: RuntimeWarning: divide by zero encountered in divide\n", + ":89: RuntimeWarning: invalid value encountered in divide\n" + ] + }, + { + "name": "stdout", + "output_type": "stream", + "text": [ + "DC NN VLMC NN\n", + "N_contact_pairs = 196\n", + "N_noncontact_cell_pairs = 196\n", + "N_contact_pairs = 196\n", + "N_noncontact_cell_pairs = 196\n", + "Endo NN Microglia NN\n" + ] + }, + { + "name": "stderr", + "output_type": "stream", + "text": [ + ":89: RuntimeWarning: divide by zero encountered in divide\n", + ":89: RuntimeWarning: invalid value encountered in divide\n" + ] + }, + { + "name": "stdout", + "output_type": "stream", + "text": [ + "N_contact_pairs = 13000\n", + "N_noncontact_cell_pairs = 13000\n" + ] + }, + { + "name": "stderr", + "output_type": "stream", + "text": [ + ":89: RuntimeWarning: divide by zero encountered in divide\n", + ":89: RuntimeWarning: invalid value encountered in divide\n" + ] + }, + { + "name": "stdout", + "output_type": "stream", + "text": [ + "N_contact_pairs = 13000\n", + "N_noncontact_cell_pairs = 13000\n" + ] + }, + { + "name": "stderr", + "output_type": "stream", + "text": [ + ":89: RuntimeWarning: divide by zero encountered in divide\n", + ":89: RuntimeWarning: invalid value encountered in divide\n", + ":89: RuntimeWarning: divide by zero encountered in divide\n", + ":89: RuntimeWarning: invalid value encountered in divide\n" + ] + }, + { + "name": "stdout", + "output_type": "stream", + "text": [ + "L5 PPP Glut L5 PPP Glut\n", + "N_contact_pairs = 256\n", + "N_noncontact_cell_pairs = 256\n", + "CA1-ProS Glut Pvalb chandelier Gaba\n", + "N_contact_pairs = 1267\n", + "N_noncontact_cell_pairs = 1267\n" + ] + }, + { + "name": "stderr", + "output_type": "stream", + "text": [ + ":89: RuntimeWarning: divide by zero encountered in divide\n", + ":89: RuntimeWarning: invalid value encountered in divide\n" + ] + }, + { + "name": "stdout", + "output_type": "stream", + "text": [ + "N_contact_pairs = 1267\n", + "N_noncontact_cell_pairs = 1267\n", + "L2/3 IT ENT Glut L2/3 IT ENT Glut\n" + ] + }, + { + "name": "stderr", + "output_type": "stream", + "text": [ + ":89: RuntimeWarning: divide by zero encountered in divide\n", + ":89: RuntimeWarning: invalid value encountered in divide\n" + ] + }, + { + "name": "stdout", + "output_type": "stream", + "text": [ + "N_contact_pairs = 18110\n", + "N_noncontact_cell_pairs = 18110\n" + ] + }, + { + "name": "stderr", + "output_type": "stream", + "text": [ + ":89: RuntimeWarning: divide by zero encountered in divide\n", + ":89: RuntimeWarning: invalid value encountered in divide\n" + ] + }, + { + "name": "stdout", + "output_type": "stream", + "text": [ + "Peri NN VLMC NN\n", + "N_contact_pairs = 1104\n", + "N_noncontact_cell_pairs = 1104\n" + ] + }, + { + "name": "stderr", + "output_type": "stream", + "text": [ + ":89: RuntimeWarning: divide by zero encountered in divide\n", + ":89: RuntimeWarning: invalid value encountered in divide\n" + ] + }, + { + "name": "stdout", + "output_type": "stream", + "text": [ + "N_contact_pairs = 1104\n", + "N_noncontact_cell_pairs = 1104\n", + "L5/6 IT TPE-ENT Glut L5/6 IT TPE-ENT Glut\n", + "N_contact_pairs = 884\n", + "N_noncontact_cell_pairs = 884\n", + "L2 IT ENT-po Glut L2 IT ENT-po Glut\n", + "N_contact_pairs = 2967\n", + "N_noncontact_cell_pairs = 2967\n" + ] + }, + { + "name": "stderr", + "output_type": "stream", + "text": [ + ":89: RuntimeWarning: divide by zero encountered in divide\n", + ":89: RuntimeWarning: invalid value encountered in divide\n", + ":89: RuntimeWarning: divide by zero encountered in divide\n", + ":89: RuntimeWarning: invalid value encountered in divide\n", + ":89: RuntimeWarning: divide by zero encountered in divide\n", + ":89: RuntimeWarning: invalid value encountered in divide\n" + ] + }, + { + "name": "stdout", + "output_type": "stream", + "text": [ + "Lamp5 Lhx6 Gaba Lamp5 Lhx6 Gaba\n", + "N_contact_pairs = 274\n", + "N_noncontact_cell_pairs = 274\n", + "Astroependymal NN VLMC NN\n", + "N_contact_pairs = 149\n", + "N_noncontact_cell_pairs = 149\n" + ] + }, + { + "name": "stderr", + "output_type": "stream", + "text": [ + ":89: RuntimeWarning: divide by zero encountered in divide\n", + ":89: RuntimeWarning: invalid value encountered in divide\n", + ":89: RuntimeWarning: divide by zero encountered in divide\n", + ":89: RuntimeWarning: invalid value encountered in divide\n", + ":89: RuntimeWarning: divide by zero encountered in divide\n", + ":89: RuntimeWarning: invalid value encountered in divide\n" + ] + }, + { + "name": "stdout", + "output_type": "stream", + "text": [ + "N_contact_pairs = 149\n", + "N_noncontact_cell_pairs = 149\n", + "Peri NN Peri NN\n", + "N_contact_pairs = 498\n", + "N_noncontact_cell_pairs = 498\n", + "DG-PIR Ex IMN Lamp5 Lhx6 Gaba\n" + ] + }, + { + "name": "stderr", + "output_type": "stream", + "text": [ + ":89: RuntimeWarning: divide by zero encountered in divide\n", + ":89: RuntimeWarning: invalid value encountered in divide\n", + ":89: RuntimeWarning: divide by zero encountered in divide\n", + ":89: RuntimeWarning: invalid value encountered in divide\n", + ":89: RuntimeWarning: divide by zero encountered in divide\n", + ":89: RuntimeWarning: invalid value encountered in divide\n", + ":89: RuntimeWarning: divide by zero encountered in divide\n", + ":89: RuntimeWarning: invalid value encountered in divide\n" + ] + }, + { + "name": "stdout", + "output_type": "stream", + "text": [ + "N_contact_pairs = 258\n", + "N_noncontact_cell_pairs = 258\n", + "N_contact_pairs = 258\n", + "N_noncontact_cell_pairs = 258\n", + "Sncg Gaba Sncg Gaba\n", + "N_contact_pairs = 79\n", + "N_noncontact_cell_pairs = 79\n", + "Astro-TE NN BAM NN\n", + "N_contact_pairs = 1495\n", + "N_noncontact_cell_pairs = 1495\n" + ] + }, + { + "name": "stderr", + "output_type": "stream", + "text": [ + ":89: RuntimeWarning: divide by zero encountered in divide\n", + ":89: RuntimeWarning: invalid value encountered in divide\n" + ] + }, + { + "name": "stdout", + "output_type": "stream", + "text": [ + "N_contact_pairs = 1495\n", + "N_noncontact_cell_pairs = 1495\n" + ] + }, + { + "name": "stderr", + "output_type": "stream", + "text": [ + ":89: RuntimeWarning: divide by zero encountered in divide\n", + ":89: RuntimeWarning: invalid value encountered in divide\n" + ] + }, + { + "name": "stdout", + "output_type": "stream", + "text": [ + "Astro-TE NN Microglia NN\n", + "N_contact_pairs = 17197\n", + "N_noncontact_cell_pairs = 17197\n" + ] + }, + { + "name": "stderr", + "output_type": "stream", + "text": [ + ":89: RuntimeWarning: divide by zero encountered in divide\n", + ":89: RuntimeWarning: invalid value encountered in divide\n" + ] + }, + { + "name": "stdout", + "output_type": "stream", + "text": [ + "N_contact_pairs = 17197\n", + "N_noncontact_cell_pairs = 17197\n" + ] + }, + { + "name": "stderr", + "output_type": "stream", + "text": [ + ":89: RuntimeWarning: divide by zero encountered in divide\n", + ":89: RuntimeWarning: invalid value encountered in divide\n", + ":89: RuntimeWarning: divide by zero encountered in divide\n", + ":89: RuntimeWarning: invalid value encountered in divide\n" + ] + }, + { + "name": "stdout", + "output_type": "stream", + "text": [ + "DC NN SMC NN\n", + "N_contact_pairs = 55\n", + "N_noncontact_cell_pairs = 55\n", + "N_contact_pairs = 55\n", + "N_noncontact_cell_pairs = 55\n", + "RHP-COA Ndnf Gaba RHP-COA Ndnf Gaba\n", + "N_contact_pairs = 115\n", + "N_noncontact_cell_pairs = 115\n", + "DG-PIR Ex IMN Oligo NN\n" + ] + }, + { + "name": "stderr", + "output_type": "stream", + "text": [ + ":89: RuntimeWarning: divide by zero encountered in divide\n", + ":89: RuntimeWarning: invalid value encountered in divide\n", + ":89: RuntimeWarning: divide by zero encountered in divide\n", + ":89: RuntimeWarning: invalid value encountered in divide\n" + ] + }, + { + "name": "stdout", + "output_type": "stream", + "text": [ + "N_contact_pairs = 625\n", + "N_noncontact_cell_pairs = 625\n" + ] + }, + { + "name": "stderr", + "output_type": "stream", + "text": [ + ":89: RuntimeWarning: divide by zero encountered in divide\n", + ":89: RuntimeWarning: invalid value encountered in divide\n" + ] + }, + { + "name": "stdout", + "output_type": "stream", + "text": [ + "N_contact_pairs = 625\n", + "N_noncontact_cell_pairs = 625\n", + "Endo NN Oligo NN\n" + ] + }, + { + "name": "stderr", + "output_type": "stream", + "text": [ + ":89: RuntimeWarning: divide by zero encountered in divide\n", + ":89: RuntimeWarning: invalid value encountered in divide\n" + ] + }, + { + "name": "stdout", + "output_type": "stream", + "text": [ + "N_contact_pairs = 16897\n", + "N_noncontact_cell_pairs = 16897\n" + ] + }, + { + "name": "stderr", + "output_type": "stream", + "text": [ + ":89: RuntimeWarning: divide by zero encountered in divide\n", + ":89: RuntimeWarning: invalid value encountered in divide\n" + ] + }, + { + "name": "stdout", + "output_type": "stream", + "text": [ + "N_contact_pairs = 16897\n", + "N_noncontact_cell_pairs = 16897\n" + ] + }, + { + "name": "stderr", + "output_type": "stream", + "text": [ + ":89: RuntimeWarning: divide by zero encountered in divide\n", + ":89: RuntimeWarning: invalid value encountered in divide\n" + ] + }, + { + "name": "stdout", + "output_type": "stream", + "text": [ + "Astro-TE NN Peri NN\n", + "N_contact_pairs = 6574\n", + "N_noncontact_cell_pairs = 6574\n" + ] + }, + { + "name": "stderr", + "output_type": "stream", + "text": [ + ":89: RuntimeWarning: divide by zero encountered in divide\n", + ":89: RuntimeWarning: invalid value encountered in divide\n" + ] + }, + { + "name": "stdout", + "output_type": "stream", + "text": [ + "N_contact_pairs = 6574\n", + "N_noncontact_cell_pairs = 6574\n" + ] + }, + { + "name": "stderr", + "output_type": "stream", + "text": [ + ":89: RuntimeWarning: divide by zero encountered in divide\n", + ":89: RuntimeWarning: invalid value encountered in divide\n", + ":89: RuntimeWarning: divide by zero encountered in divide\n", + ":89: RuntimeWarning: invalid value encountered in divide\n" + ] + }, + { + "name": "stdout", + "output_type": "stream", + "text": [ + "ABC NN SMC NN\n", + "N_contact_pairs = 235\n", + "N_noncontact_cell_pairs = 235\n", + "N_contact_pairs = 235\n", + "N_noncontact_cell_pairs = 235\n", + "CA2-FC-IG Glut Pvalb chandelier Gaba\n", + "N_contact_pairs = 130\n", + "N_noncontact_cell_pairs = 130\n" + ] + }, + { + "name": "stderr", + "output_type": "stream", + "text": [ + ":89: RuntimeWarning: divide by zero encountered in divide\n", + ":89: RuntimeWarning: invalid value encountered in divide\n", + ":89: RuntimeWarning: divide by zero encountered in divide\n", + ":89: RuntimeWarning: invalid value encountered in divide\n", + ":89: RuntimeWarning: divide by zero encountered in divide\n", + ":89: RuntimeWarning: invalid value encountered in divide\n" + ] + }, + { + "name": "stdout", + "output_type": "stream", + "text": [ + "N_contact_pairs = 130\n", + "N_noncontact_cell_pairs = 130\n", + "Microglia NN Peri NN\n", + "N_contact_pairs = 1868\n", + "N_noncontact_cell_pairs = 1868\n" + ] + }, + { + "name": "stderr", + "output_type": "stream", + "text": [ + ":89: RuntimeWarning: divide by zero encountered in divide\n", + ":89: RuntimeWarning: invalid value encountered in divide\n" + ] + }, + { + "name": "stdout", + "output_type": "stream", + "text": [ + "N_contact_pairs = 1868\n", + "N_noncontact_cell_pairs = 1868\n", + "CT SUB Glut VLMC NN\n", + "N_contact_pairs = 131\n", + "N_noncontact_cell_pairs = 131\n" + ] + }, + { + "name": "stderr", + "output_type": "stream", + "text": [ + ":89: RuntimeWarning: divide by zero encountered in divide\n", + ":89: RuntimeWarning: invalid value encountered in divide\n", + ":89: RuntimeWarning: divide by zero encountered in divide\n", + ":89: RuntimeWarning: invalid value encountered in divide\n" + ] + }, + { + "name": "stdout", + "output_type": "stream", + "text": [ + "N_contact_pairs = 131\n", + "N_noncontact_cell_pairs = 131\n", + "Astro-TE NN HPF CR Glut\n" + ] + }, + { + "name": "stderr", + "output_type": "stream", + "text": [ + ":89: RuntimeWarning: divide by zero encountered in divide\n", + ":89: RuntimeWarning: invalid value encountered in divide\n" + ] + }, + { + "name": "stdout", + "output_type": "stream", + "text": [ + "N_contact_pairs = 3122\n", + "N_noncontact_cell_pairs = 3122\n" + ] + }, + { + "name": "stderr", + "output_type": "stream", + "text": [ + ":89: RuntimeWarning: divide by zero encountered in divide\n", + ":89: RuntimeWarning: invalid value encountered in divide\n" + ] + }, + { + "name": "stdout", + "output_type": "stream", + "text": [ + "N_contact_pairs = 3122\n", + "N_noncontact_cell_pairs = 3122\n" + ] + }, + { + "name": "stderr", + "output_type": "stream", + "text": [ + ":89: RuntimeWarning: divide by zero encountered in divide\n", + ":89: RuntimeWarning: invalid value encountered in divide\n" + ] + }, + { + "name": "stdout", + "output_type": "stream", + "text": [ + "Endo NN NP SUB Glut\n", + "N_contact_pairs = 2688\n", + "N_noncontact_cell_pairs = 2688\n" + ] + }, + { + "name": "stderr", + "output_type": "stream", + "text": [ + ":89: RuntimeWarning: divide by zero encountered in divide\n", + ":89: RuntimeWarning: invalid value encountered in divide\n" + ] + }, + { + "name": "stdout", + "output_type": "stream", + "text": [ + "N_contact_pairs = 2688\n", + "N_noncontact_cell_pairs = 2688\n" + ] + }, + { + "name": "stderr", + "output_type": "stream", + "text": [ + ":89: RuntimeWarning: divide by zero encountered in divide\n", + ":89: RuntimeWarning: invalid value encountered in divide\n" + ] + }, + { + "name": "stdout", + "output_type": "stream", + "text": [ + "Astro-TE NN SMC NN\n", + "N_contact_pairs = 3599\n", + "N_noncontact_cell_pairs = 3599\n" + ] + }, + { + "name": "stderr", + "output_type": "stream", + "text": [ + ":89: RuntimeWarning: divide by zero encountered in divide\n", + ":89: RuntimeWarning: invalid value encountered in divide\n" + ] + }, + { + "name": "stdout", + "output_type": "stream", + "text": [ + "N_contact_pairs = 3599\n", + "N_noncontact_cell_pairs = 3599\n" + ] + }, + { + "name": "stderr", + "output_type": "stream", + "text": [ + ":89: RuntimeWarning: divide by zero encountered in divide\n", + ":89: RuntimeWarning: invalid value encountered in divide\n" + ] + }, + { + "name": "stdout", + "output_type": "stream", + "text": [ + "OPC NN Oligo NN\n", + "N_contact_pairs = 5603\n", + "N_noncontact_cell_pairs = 5603\n" + ] + }, + { + "name": "stderr", + "output_type": "stream", + "text": [ + ":89: RuntimeWarning: divide by zero encountered in divide\n", + ":89: RuntimeWarning: invalid value encountered in divide\n" + ] + }, + { + "name": "stdout", + "output_type": "stream", + "text": [ + "N_contact_pairs = 5603\n", + "N_noncontact_cell_pairs = 5603\n" + ] + }, + { + "name": "stderr", + "output_type": "stream", + "text": [ + ":89: RuntimeWarning: divide by zero encountered in divide\n", + ":89: RuntimeWarning: invalid value encountered in divide\n" + ] + }, + { + "name": "stdout", + "output_type": "stream", + "text": [ + "Endo NN Lymphoid NN\n", + "N_contact_pairs = 279\n", + "N_noncontact_cell_pairs = 279\n" + ] + }, + { + "name": "stderr", + "output_type": "stream", + "text": [ + ":89: RuntimeWarning: divide by zero encountered in divide\n", + ":89: RuntimeWarning: invalid value encountered in divide\n" + ] + }, + { + "name": "stdout", + "output_type": "stream", + "text": [ + "N_contact_pairs = 279\n", + "N_noncontact_cell_pairs = 279\n", + "CA1-ProS Glut CA2-FC-IG Glut\n" + ] + }, + { + "name": "stderr", + "output_type": "stream", + "text": [ + ":89: RuntimeWarning: divide by zero encountered in divide\n", + ":89: RuntimeWarning: invalid value encountered in divide\n" + ] + }, + { + "name": "stdout", + "output_type": "stream", + "text": [ + "N_contact_pairs = 2702\n", + "N_noncontact_cell_pairs = 2702\n" + ] + }, + { + "name": "stderr", + "output_type": "stream", + "text": [ + ":89: RuntimeWarning: divide by zero encountered in divide\n", + ":89: RuntimeWarning: invalid value encountered in divide\n" + ] + }, + { + "name": "stdout", + "output_type": "stream", + "text": [ + "N_contact_pairs = 2702\n", + "N_noncontact_cell_pairs = 2702\n", + "Microglia NN Oligo NN\n" + ] + }, + { + "name": "stderr", + "output_type": "stream", + "text": [ + ":89: RuntimeWarning: divide by zero encountered in divide\n", + ":89: RuntimeWarning: invalid value encountered in divide\n" + ] + }, + { + "name": "stdout", + "output_type": "stream", + "text": [ + "N_contact_pairs = 6162\n", + "N_noncontact_cell_pairs = 6162\n" + ] + }, + { + "name": "stderr", + "output_type": "stream", + "text": [ + ":89: RuntimeWarning: divide by zero encountered in divide\n", + ":89: RuntimeWarning: invalid value encountered in divide\n" + ] + }, + { + "name": "stdout", + "output_type": "stream", + "text": [ + "N_contact_pairs = 6162\n", + "N_noncontact_cell_pairs = 6162\n" + ] + }, + { + "name": "stderr", + "output_type": "stream", + "text": [ + ":89: RuntimeWarning: divide by zero encountered in divide\n", + ":89: RuntimeWarning: invalid value encountered in divide\n" + ] + }, + { + "name": "stdout", + "output_type": "stream", + "text": [ + "DC NN Endo NN\n", + "N_contact_pairs = 113\n", + "N_noncontact_cell_pairs = 113\n" + ] + }, + { + "name": "stderr", + "output_type": "stream", + "text": [ + ":89: RuntimeWarning: divide by zero encountered in divide\n", + ":89: RuntimeWarning: invalid value encountered in divide\n" + ] + }, + { + "name": "stdout", + "output_type": "stream", + "text": [ + "N_contact_pairs = 113\n", + "N_noncontact_cell_pairs = 113\n", + "CA1-ProS Glut Lamp5 Lhx6 Gaba\n" + ] + }, + { + "name": "stderr", + "output_type": "stream", + "text": [ + ":89: RuntimeWarning: divide by zero encountered in divide\n", + ":89: RuntimeWarning: invalid value encountered in divide\n" + ] + }, + { + "name": "stdout", + "output_type": "stream", + "text": [ + "N_contact_pairs = 1896\n", + "N_noncontact_cell_pairs = 1896\n" + ] + }, + { + "name": "stderr", + "output_type": "stream", + "text": [ + ":89: RuntimeWarning: divide by zero encountered in divide\n", + ":89: RuntimeWarning: invalid value encountered in divide\n" + ] + }, + { + "name": "stdout", + "output_type": "stream", + "text": [ + "N_contact_pairs = 1896\n", + "N_noncontact_cell_pairs = 1896\n", + "CA2-FC-IG Glut Lamp5 Lhx6 Gaba\n" + ] + }, + { + "name": "stderr", + "output_type": "stream", + "text": [ + ":89: RuntimeWarning: divide by zero encountered in divide\n", + ":89: RuntimeWarning: invalid value encountered in divide\n", + ":89: RuntimeWarning: divide by zero encountered in divide\n", + ":89: RuntimeWarning: invalid value encountered in divide\n", + ":89: RuntimeWarning: divide by zero encountered in divide\n", + ":89: RuntimeWarning: invalid value encountered in divide\n", + ":89: RuntimeWarning: divide by zero encountered in divide\n", + ":89: RuntimeWarning: invalid value encountered in divide\n" + ] + }, + { + "name": "stdout", + "output_type": "stream", + "text": [ + "N_contact_pairs = 243\n", + "N_noncontact_cell_pairs = 243\n", + "N_contact_pairs = 243\n", + "N_noncontact_cell_pairs = 243\n", + "Lymphoid NN SMC NN\n", + "N_contact_pairs = 52\n", + "N_noncontact_cell_pairs = 52\n", + "N_contact_pairs = 52\n", + "N_noncontact_cell_pairs = 52\n" + ] + }, + { + "name": "stderr", + "output_type": "stream", + "text": [ + ":89: RuntimeWarning: divide by zero encountered in divide\n", + ":89: RuntimeWarning: invalid value encountered in divide\n", + ":89: RuntimeWarning: divide by zero encountered in divide\n", + ":89: RuntimeWarning: invalid value encountered in divide\n" + ] + }, + { + "name": "stdout", + "output_type": "stream", + "text": [ + "BAM NN Peri NN\n", + "N_contact_pairs = 183\n", + "N_noncontact_cell_pairs = 183\n", + "N_contact_pairs = 183\n", + "N_noncontact_cell_pairs = 183\n" + ] + }, + { + "name": "stderr", + "output_type": "stream", + "text": [ + ":89: RuntimeWarning: divide by zero encountered in divide\n", + ":89: RuntimeWarning: invalid value encountered in divide\n" + ] + }, + { + "name": "stdout", + "output_type": "stream", + "text": [ + "Astro-TE NN OPC NN\n", + "N_contact_pairs = 14577\n", + "N_noncontact_cell_pairs = 14577\n" + ] + }, + { + "name": "stderr", + "output_type": "stream", + "text": [ + ":89: RuntimeWarning: divide by zero encountered in divide\n", + ":89: RuntimeWarning: invalid value encountered in divide\n" + ] + }, + { + "name": "stdout", + "output_type": "stream", + "text": [ + "N_contact_pairs = 14577\n", + "N_noncontact_cell_pairs = 14577\n" + ] + }, + { + "name": "stderr", + "output_type": "stream", + "text": [ + ":89: RuntimeWarning: divide by zero encountered in divide\n", + ":89: RuntimeWarning: invalid value encountered in divide\n" + ] + }, + { + "name": "stdout", + "output_type": "stream", + "text": [ + "Astro-TE NN Lamp5 Lhx6 Gaba\n", + "N_contact_pairs = 3004\n", + "N_noncontact_cell_pairs = 3004\n" + ] + }, + { + "name": "stderr", + "output_type": "stream", + "text": [ + ":89: RuntimeWarning: divide by zero encountered in divide\n", + ":89: RuntimeWarning: invalid value encountered in divide\n" + ] + }, + { + "name": "stdout", + "output_type": "stream", + "text": [ + "N_contact_pairs = 3004\n", + "N_noncontact_cell_pairs = 3004\n" + ] + }, + { + "name": "stderr", + "output_type": "stream", + "text": [ + ":89: RuntimeWarning: divide by zero encountered in divide\n", + ":89: RuntimeWarning: invalid value encountered in divide\n", + ":89: RuntimeWarning: divide by zero encountered in divide\n", + ":89: RuntimeWarning: invalid value encountered in divide\n" + ] + }, + { + "name": "stdout", + "output_type": "stream", + "text": [ + "CA3 Glut Pvalb chandelier Gaba\n", + "N_contact_pairs = 432\n", + "N_noncontact_cell_pairs = 432\n", + "N_contact_pairs = 432\n", + "N_noncontact_cell_pairs = 432\n", + "Astroependymal NN Endo NN\n" + ] + }, + { + "name": "stderr", + "output_type": "stream", + "text": [ + ":89: RuntimeWarning: divide by zero encountered in divide\n", + ":89: RuntimeWarning: invalid value encountered in divide\n" + ] + }, + { + "name": "stdout", + "output_type": "stream", + "text": [ + "N_contact_pairs = 100\n", + "N_noncontact_cell_pairs = 100\n" + ] + }, + { + "name": "stderr", + "output_type": "stream", + "text": [ + ":89: RuntimeWarning: divide by zero encountered in divide\n", + ":89: RuntimeWarning: invalid value encountered in divide\n" + ] + }, + { + "name": "stdout", + "output_type": "stream", + "text": [ + "N_contact_pairs = 100\n", + "N_noncontact_cell_pairs = 100\n", + "CA3 Glut Lamp5 Lhx6 Gaba\n" + ] + }, + { + "name": "stderr", + "output_type": "stream", + "text": [ + ":89: RuntimeWarning: divide by zero encountered in divide\n", + ":89: RuntimeWarning: invalid value encountered in divide\n" + ] + }, + { + "name": "stdout", + "output_type": "stream", + "text": [ + "N_contact_pairs = 1629\n", + "N_noncontact_cell_pairs = 1629\n" + ] + }, + { + "name": "stderr", + "output_type": "stream", + "text": [ + ":89: RuntimeWarning: divide by zero encountered in divide\n", + ":89: RuntimeWarning: invalid value encountered in divide\n" + ] + }, + { + "name": "stdout", + "output_type": "stream", + "text": [ + "N_contact_pairs = 1629\n", + "N_noncontact_cell_pairs = 1629\n", + "DG-PIR Ex IMN Microglia NN\n" + ] + }, + { + "name": "stderr", + "output_type": "stream", + "text": [ + ":89: RuntimeWarning: divide by zero encountered in divide\n", + ":89: RuntimeWarning: invalid value encountered in divide\n", + ":89: RuntimeWarning: divide by zero encountered in divide\n", + ":89: RuntimeWarning: invalid value encountered in divide\n" + ] + }, + { + "name": "stdout", + "output_type": "stream", + "text": [ + "N_contact_pairs = 546\n", + "N_noncontact_cell_pairs = 546\n", + "N_contact_pairs = 546\n", + "N_noncontact_cell_pairs = 546\n", + "CA2-FC-IG Glut CA3 Glut\n", + "N_contact_pairs = 1323\n", + "N_noncontact_cell_pairs = 1323\n" + ] + }, + { + "name": "stderr", + "output_type": "stream", + "text": [ + ":89: RuntimeWarning: divide by zero encountered in divide\n", + ":89: RuntimeWarning: invalid value encountered in divide\n", + ":89: RuntimeWarning: divide by zero encountered in divide\n", + ":89: RuntimeWarning: invalid value encountered in divide\n" + ] + }, + { + "name": "stdout", + "output_type": "stream", + "text": [ + "N_contact_pairs = 1323\n", + "N_noncontact_cell_pairs = 1323\n", + "OPC NN Sst Gaba\n" + ] + }, + { + "name": "stderr", + "output_type": "stream", + "text": [ + ":89: RuntimeWarning: divide by zero encountered in divide\n", + ":89: RuntimeWarning: invalid value encountered in divide\n" + ] + }, + { + "name": "stdout", + "output_type": "stream", + "text": [ + "N_contact_pairs = 1851\n", + "N_noncontact_cell_pairs = 1851\n" + ] + }, + { + "name": "stderr", + "output_type": "stream", + "text": [ + ":89: RuntimeWarning: divide by zero encountered in divide\n", + ":89: RuntimeWarning: invalid value encountered in divide\n" + ] + }, + { + "name": "stdout", + "output_type": "stream", + "text": [ + "N_contact_pairs = 1851\n", + "N_noncontact_cell_pairs = 1851\n", + "Lamp5 Lhx6 Gaba RHP-COA Ndnf Gaba\n", + "N_contact_pairs = 160\n", + "N_noncontact_cell_pairs = 160\n" + ] + }, + { + "name": "stderr", + "output_type": "stream", + "text": [ + ":89: RuntimeWarning: divide by zero encountered in divide\n", + ":89: RuntimeWarning: invalid value encountered in divide\n", + ":89: RuntimeWarning: divide by zero encountered in divide\n", + ":89: RuntimeWarning: invalid value encountered in divide\n", + ":89: RuntimeWarning: divide by zero encountered in divide\n", + ":89: RuntimeWarning: invalid value encountered in divide\n" + ] + }, + { + "name": "stdout", + "output_type": "stream", + "text": [ + "N_contact_pairs = 160\n", + "N_noncontact_cell_pairs = 160\n", + "NP SUB Glut Sst Gaba\n", + "N_contact_pairs = 903\n", + "N_noncontact_cell_pairs = 903\n" + ] + }, + { + "name": "stderr", + "output_type": "stream", + "text": [ + ":89: RuntimeWarning: divide by zero encountered in divide\n", + ":89: RuntimeWarning: invalid value encountered in divide\n", + ":89: RuntimeWarning: divide by zero encountered in divide\n", + ":89: RuntimeWarning: invalid value encountered in divide\n", + ":89: RuntimeWarning: divide by zero encountered in divide\n", + ":89: RuntimeWarning: invalid value encountered in divide\n" + ] + }, + { + "name": "stdout", + "output_type": "stream", + "text": [ + "N_contact_pairs = 903\n", + "N_noncontact_cell_pairs = 903\n", + "DG-PIR Ex IMN RHP-COA Ndnf Gaba\n", + "N_contact_pairs = 72\n", + "N_noncontact_cell_pairs = 72\n", + "N_contact_pairs = 72\n", + "N_noncontact_cell_pairs = 72\n", + "L5 PPP Glut Sst Gaba\n", + "N_contact_pairs = 223\n", + "N_noncontact_cell_pairs = 223\n" + ] + }, + { + "name": "stderr", + "output_type": "stream", + "text": [ + ":89: RuntimeWarning: divide by zero encountered in divide\n", + ":89: RuntimeWarning: invalid value encountered in divide\n", + ":89: RuntimeWarning: divide by zero encountered in divide\n", + ":89: RuntimeWarning: invalid value encountered in divide\n", + ":89: RuntimeWarning: divide by zero encountered in divide\n", + ":89: RuntimeWarning: invalid value encountered in divide\n" + ] + }, + { + "name": "stdout", + "output_type": "stream", + "text": [ + "N_contact_pairs = 223\n", + "N_noncontact_cell_pairs = 223\n", + "Endo NN HPF CR Glut\n", + "N_contact_pairs = 1917\n", + "N_noncontact_cell_pairs = 1917\n" + ] + }, + { + "name": "stderr", + "output_type": "stream", + "text": [ + ":89: RuntimeWarning: divide by zero encountered in divide\n", + ":89: RuntimeWarning: invalid value encountered in divide\n" + ] + }, + { + "name": "stdout", + "output_type": "stream", + "text": [ + "N_contact_pairs = 1917\n", + "N_noncontact_cell_pairs = 1917\n", + "NP PPP Glut SUB-ProS Glut\n" + ] + }, + { + "name": "stderr", + "output_type": "stream", + "text": [ + ":89: RuntimeWarning: divide by zero encountered in divide\n", + ":89: RuntimeWarning: invalid value encountered in divide\n", + ":89: RuntimeWarning: divide by zero encountered in divide\n", + ":89: RuntimeWarning: invalid value encountered in divide\n", + ":89: RuntimeWarning: divide by zero encountered in divide\n", + ":89: RuntimeWarning: invalid value encountered in divide\n" + ] + }, + { + "name": "stdout", + "output_type": "stream", + "text": [ + "N_contact_pairs = 135\n", + "N_noncontact_cell_pairs = 135\n", + "N_contact_pairs = 135\n", + "N_noncontact_cell_pairs = 135\n", + "BAM NN CHOR NN\n", + "N_contact_pairs = 68\n", + "N_noncontact_cell_pairs = 68\n", + "N_contact_pairs = 68\n", + "N_noncontact_cell_pairs = 68\n", + "NP PPP Glut Sst Gaba\n" + ] + }, + { + "name": "stderr", + "output_type": "stream", + "text": [ + ":89: RuntimeWarning: divide by zero encountered in divide\n", + ":89: RuntimeWarning: invalid value encountered in divide\n", + ":89: RuntimeWarning: divide by zero encountered in divide\n", + ":89: RuntimeWarning: invalid value encountered in divide\n", + ":89: RuntimeWarning: divide by zero encountered in divide\n", + ":89: RuntimeWarning: invalid value encountered in divide\n", + ":89: RuntimeWarning: divide by zero encountered in divide\n", + ":89: RuntimeWarning: invalid value encountered in divide\n" + ] + }, + { + "name": "stdout", + "output_type": "stream", + "text": [ + "N_contact_pairs = 360\n", + "N_noncontact_cell_pairs = 360\n", + "N_contact_pairs = 360\n", + "N_noncontact_cell_pairs = 360\n", + "L5 PPP Glut SUB-ProS Glut\n", + "N_contact_pairs = 159\n", + "N_noncontact_cell_pairs = 159\n" + ] + }, + { + "name": "stderr", + "output_type": "stream", + "text": [ + ":89: RuntimeWarning: divide by zero encountered in divide\n", + ":89: RuntimeWarning: invalid value encountered in divide\n", + ":89: RuntimeWarning: divide by zero encountered in divide\n", + ":89: RuntimeWarning: invalid value encountered in divide\n" + ] + }, + { + "name": "stdout", + "output_type": "stream", + "text": [ + "N_contact_pairs = 159\n", + "N_noncontact_cell_pairs = 159\n", + "Microglia NN VLMC NN\n", + "N_contact_pairs = 1491\n", + "N_noncontact_cell_pairs = 1491\n" + ] + }, + { + "name": "stderr", + "output_type": "stream", + "text": [ + ":89: RuntimeWarning: divide by zero encountered in divide\n", + ":89: RuntimeWarning: invalid value encountered in divide\n" + ] + }, + { + "name": "stdout", + "output_type": "stream", + "text": [ + "N_contact_pairs = 1491\n", + "N_noncontact_cell_pairs = 1491\n", + "CT SUB Glut Oligo NN\n" + ] + }, + { + "name": "stderr", + "output_type": "stream", + "text": [ + ":89: RuntimeWarning: divide by zero encountered in divide\n", + ":89: RuntimeWarning: invalid value encountered in divide\n" + ] + }, + { + "name": "stdout", + "output_type": "stream", + "text": [ + "N_contact_pairs = 1960\n", + "N_noncontact_cell_pairs = 1960\n" + ] + }, + { + "name": "stderr", + "output_type": "stream", + "text": [ + ":89: RuntimeWarning: divide by zero encountered in divide\n", + ":89: RuntimeWarning: invalid value encountered in divide\n" + ] + }, + { + "name": "stdout", + "output_type": "stream", + "text": [ + "N_contact_pairs = 1960\n", + "N_noncontact_cell_pairs = 1960\n", + "ABC NN Endo NN\n" + ] + }, + { + "name": "stderr", + "output_type": "stream", + "text": [ + ":89: RuntimeWarning: divide by zero encountered in divide\n", + ":89: RuntimeWarning: invalid value encountered in divide\n" + ] + }, + { + "name": "stdout", + "output_type": "stream", + "text": [ + "N_contact_pairs = 869\n", + "N_noncontact_cell_pairs = 869\n" + ] + }, + { + "name": "stderr", + "output_type": "stream", + "text": [ + ":89: RuntimeWarning: divide by zero encountered in divide\n", + ":89: RuntimeWarning: invalid value encountered in divide\n" + ] + }, + { + "name": "stdout", + "output_type": "stream", + "text": [ + "N_contact_pairs = 869\n", + "N_noncontact_cell_pairs = 869\n", + "L2 IT PPP-APr Glut Sncg Gaba\n", + "N_contact_pairs = 78\n", + "N_noncontact_cell_pairs = 78\n" + ] + }, + { + "name": "stderr", + "output_type": "stream", + "text": [ + ":89: RuntimeWarning: divide by zero encountered in divide\n", + ":89: RuntimeWarning: invalid value encountered in divide\n", + ":89: RuntimeWarning: divide by zero encountered in divide\n", + ":89: RuntimeWarning: invalid value encountered in divide\n", + ":89: RuntimeWarning: divide by zero encountered in divide\n", + ":89: RuntimeWarning: invalid value encountered in divide\n", + ":89: RuntimeWarning: divide by zero encountered in divide\n", + ":89: RuntimeWarning: invalid value encountered in divide\n" + ] + }, + { + "name": "stdout", + "output_type": "stream", + "text": [ + "N_contact_pairs = 78\n", + "N_noncontact_cell_pairs = 78\n", + "CHOR NN VLMC NN\n", + "N_contact_pairs = 204\n", + "N_noncontact_cell_pairs = 204\n", + "N_contact_pairs = 204\n", + "N_noncontact_cell_pairs = 204\n", + "CA1-ProS Glut DG-PIR Ex IMN\n" + ] + }, + { + "name": "stderr", + "output_type": "stream", + "text": [ + ":89: RuntimeWarning: divide by zero encountered in divide\n", + ":89: RuntimeWarning: invalid value encountered in divide\n" + ] + }, + { + "name": "stdout", + "output_type": "stream", + "text": [ + "N_contact_pairs = 62\n", + "N_noncontact_cell_pairs = 62\n" + ] + }, + { + "name": "stderr", + "output_type": "stream", + "text": [ + ":89: RuntimeWarning: divide by zero encountered in divide\n", + ":89: RuntimeWarning: invalid value encountered in divide\n" + ] + }, + { + "name": "stdout", + "output_type": "stream", + "text": [ + "N_contact_pairs = 62\n", + "N_noncontact_cell_pairs = 62\n", + "NP PPP Glut Oligo NN\n", + "N_contact_pairs = 929\n", + "N_noncontact_cell_pairs = 929\n" + ] + }, + { + "name": "stderr", + "output_type": "stream", + "text": [ + ":89: RuntimeWarning: divide by zero encountered in divide\n", + ":89: RuntimeWarning: invalid value encountered in divide\n", + ":89: RuntimeWarning: divide by zero encountered in divide\n", + ":89: RuntimeWarning: invalid value encountered in divide\n" + ] + }, + { + "name": "stdout", + "output_type": "stream", + "text": [ + "N_contact_pairs = 929\n", + "N_noncontact_cell_pairs = 929\n", + "ABC NN Astro-TE NN\n" + ] + }, + { + "name": "stderr", + "output_type": "stream", + "text": [ + ":89: RuntimeWarning: divide by zero encountered in divide\n", + ":89: RuntimeWarning: invalid value encountered in divide\n" + ] + }, + { + "name": "stdout", + "output_type": "stream", + "text": [ + "N_contact_pairs = 1127\n", + "N_noncontact_cell_pairs = 1127\n" + ] + }, + { + "name": "stderr", + "output_type": "stream", + "text": [ + ":89: RuntimeWarning: divide by zero encountered in divide\n", + ":89: RuntimeWarning: invalid value encountered in divide\n" + ] + }, + { + "name": "stdout", + "output_type": "stream", + "text": [ + "N_contact_pairs = 1127\n", + "N_noncontact_cell_pairs = 1127\n" + ] + }, + { + "name": "stderr", + "output_type": "stream", + "text": [ + ":89: RuntimeWarning: divide by zero encountered in divide\n", + ":89: RuntimeWarning: invalid value encountered in divide\n" + ] + }, + { + "name": "stdout", + "output_type": "stream", + "text": [ + "Astro-TE NN Astroependymal NN\n", + "N_contact_pairs = 105\n", + "N_noncontact_cell_pairs = 105\n" + ] + }, + { + "name": "stderr", + "output_type": "stream", + "text": [ + ":89: RuntimeWarning: divide by zero encountered in divide\n", + ":89: RuntimeWarning: invalid value encountered in divide\n" + ] + }, + { + "name": "stdout", + "output_type": "stream", + "text": [ + "N_contact_pairs = 105\n", + "N_noncontact_cell_pairs = 105\n" + ] + }, + { + "name": "stderr", + "output_type": "stream", + "text": [ + ":89: RuntimeWarning: divide by zero encountered in divide\n", + ":89: RuntimeWarning: invalid value encountered in divide\n" + ] + }, + { + "name": "stdout", + "output_type": "stream", + "text": [ + "Astro-TE NN RHP-COA Ndnf Gaba\n", + "N_contact_pairs = 1569\n", + "N_noncontact_cell_pairs = 1569\n" + ] + }, + { + "name": "stderr", + "output_type": "stream", + "text": [ + ":89: RuntimeWarning: divide by zero encountered in divide\n", + ":89: RuntimeWarning: invalid value encountered in divide\n" + ] + }, + { + "name": "stdout", + "output_type": "stream", + "text": [ + "N_contact_pairs = 1569\n", + "N_noncontact_cell_pairs = 1569\n" + ] + }, + { + "name": "stderr", + "output_type": "stream", + "text": [ + ":89: RuntimeWarning: divide by zero encountered in divide\n", + ":89: RuntimeWarning: invalid value encountered in divide\n" + ] + }, + { + "name": "stdout", + "output_type": "stream", + "text": [ + "Oligo NN Peri NN\n", + "N_contact_pairs = 2439\n", + "N_noncontact_cell_pairs = 2439\n" + ] + }, + { + "name": "stderr", + "output_type": "stream", + "text": [ + ":89: RuntimeWarning: divide by zero encountered in divide\n", + ":89: RuntimeWarning: invalid value encountered in divide\n" + ] + }, + { + "name": "stdout", + "output_type": "stream", + "text": [ + "N_contact_pairs = 2439\n", + "N_noncontact_cell_pairs = 2439\n", + "HPF CR Glut Microglia NN\n" + ] + }, + { + "name": "stderr", + "output_type": "stream", + "text": [ + ":89: RuntimeWarning: divide by zero encountered in divide\n", + ":89: RuntimeWarning: invalid value encountered in divide\n" + ] + }, + { + "name": "stdout", + "output_type": "stream", + "text": [ + "N_contact_pairs = 616\n", + "N_noncontact_cell_pairs = 616\n" + ] + }, + { + "name": "stderr", + "output_type": "stream", + "text": [ + ":89: RuntimeWarning: divide by zero encountered in divide\n", + ":89: RuntimeWarning: invalid value encountered in divide\n" + ] + }, + { + "name": "stdout", + "output_type": "stream", + "text": [ + "N_contact_pairs = 616\n", + "N_noncontact_cell_pairs = 616\n", + "SUB-ProS Glut Sst Gaba\n", + "N_contact_pairs = 2095\n", + "N_noncontact_cell_pairs = 2095\n" + ] + }, + { + "name": "stderr", + "output_type": "stream", + "text": [ + ":89: RuntimeWarning: divide by zero encountered in divide\n", + ":89: RuntimeWarning: invalid value encountered in divide\n", + ":89: RuntimeWarning: divide by zero encountered in divide\n", + ":89: RuntimeWarning: invalid value encountered in divide\n" + ] + }, + { + "name": "stdout", + "output_type": "stream", + "text": [ + "N_contact_pairs = 2095\n", + "N_noncontact_cell_pairs = 2095\n", + "CHOR NN Endo NN\n", + "N_contact_pairs = 235\n", + "N_noncontact_cell_pairs = 235\n" + ] + }, + { + "name": "stderr", + "output_type": "stream", + "text": [ + ":89: RuntimeWarning: divide by zero encountered in divide\n", + ":89: RuntimeWarning: invalid value encountered in divide\n", + ":89: RuntimeWarning: divide by zero encountered in divide\n", + ":89: RuntimeWarning: invalid value encountered in divide\n" + ] + }, + { + "name": "stdout", + "output_type": "stream", + "text": [ + "N_contact_pairs = 235\n", + "N_noncontact_cell_pairs = 235\n", + "Microglia NN NP SUB Glut\n" + ] + }, + { + "name": "stderr", + "output_type": "stream", + "text": [ + ":89: RuntimeWarning: divide by zero encountered in divide\n", + ":89: RuntimeWarning: invalid value encountered in divide\n" + ] + }, + { + "name": "stdout", + "output_type": "stream", + "text": [ + "N_contact_pairs = 839\n", + "N_noncontact_cell_pairs = 839\n", + "N_contact_pairs = 839\n", + "N_noncontact_cell_pairs = 839\n" + ] + }, + { + "name": "stderr", + "output_type": "stream", + "text": [ + ":89: RuntimeWarning: divide by zero encountered in divide\n", + ":89: RuntimeWarning: invalid value encountered in divide\n", + ":89: RuntimeWarning: divide by zero encountered in divide\n", + ":89: RuntimeWarning: invalid value encountered in divide\n" + ] + }, + { + "name": "stdout", + "output_type": "stream", + "text": [ + "ENTmv-PA-COAp Glut Sst Gaba\n", + "N_contact_pairs = 239\n", + "N_noncontact_cell_pairs = 239\n", + "N_contact_pairs = 239\n", + "N_noncontact_cell_pairs = 239\n", + "Oligo NN Sst Gaba\n" + ] + }, + { + "name": "stderr", + "output_type": "stream", + "text": [ + ":89: RuntimeWarning: divide by zero encountered in divide\n", + ":89: RuntimeWarning: invalid value encountered in divide\n", + ":89: RuntimeWarning: divide by zero encountered in divide\n", + ":89: RuntimeWarning: invalid value encountered in divide\n" + ] + }, + { + "name": "stdout", + "output_type": "stream", + "text": [ + "N_contact_pairs = 3098\n", + "N_noncontact_cell_pairs = 3098\n" + ] + }, + { + "name": "stderr", + "output_type": "stream", + "text": [ + ":89: RuntimeWarning: divide by zero encountered in divide\n", + ":89: RuntimeWarning: invalid value encountered in divide\n" + ] + }, + { + "name": "stdout", + "output_type": "stream", + "text": [ + "N_contact_pairs = 3098\n", + "N_noncontact_cell_pairs = 3098\n", + "Oligo NN RHP-COA Ndnf Gaba\n" + ] + }, + { + "name": "stderr", + "output_type": "stream", + "text": [ + ":89: RuntimeWarning: divide by zero encountered in divide\n", + ":89: RuntimeWarning: invalid value encountered in divide\n" + ] + }, + { + "name": "stdout", + "output_type": "stream", + "text": [ + "N_contact_pairs = 480\n", + "N_noncontact_cell_pairs = 480\n" + ] + }, + { + "name": "stderr", + "output_type": "stream", + "text": [ + ":89: RuntimeWarning: divide by zero encountered in divide\n", + ":89: RuntimeWarning: invalid value encountered in divide\n" + ] + }, + { + "name": "stdout", + "output_type": "stream", + "text": [ + "N_contact_pairs = 480\n", + "N_noncontact_cell_pairs = 480\n", + "NP PPP Glut NP SUB Glut\n", + "N_contact_pairs = 196\n", + "N_noncontact_cell_pairs = 196\n", + "N_contact_pairs = 196\n", + "N_noncontact_cell_pairs = 196\n", + "Astro-TE NN Sst Gaba\n" + ] + }, + { + "name": "stderr", + "output_type": "stream", + "text": [ + ":89: RuntimeWarning: divide by zero encountered in divide\n", + ":89: RuntimeWarning: invalid value encountered in divide\n", + ":89: RuntimeWarning: divide by zero encountered in divide\n", + ":89: RuntimeWarning: invalid value encountered in divide\n", + ":89: RuntimeWarning: divide by zero encountered in divide\n", + ":89: RuntimeWarning: invalid value encountered in divide\n" + ] + }, + { + "name": "stdout", + "output_type": "stream", + "text": [ + "N_contact_pairs = 6134\n", + "N_noncontact_cell_pairs = 6134\n" + ] + }, + { + "name": "stderr", + "output_type": "stream", + "text": [ + ":89: RuntimeWarning: divide by zero encountered in divide\n", + ":89: RuntimeWarning: invalid value encountered in divide\n" + ] + }, + { + "name": "stdout", + "output_type": "stream", + "text": [ + "N_contact_pairs = 6134\n", + "N_noncontact_cell_pairs = 6134\n" + ] + }, + { + "name": "stderr", + "output_type": "stream", + "text": [ + ":89: RuntimeWarning: divide by zero encountered in divide\n", + ":89: RuntimeWarning: invalid value encountered in divide\n", + ":89: RuntimeWarning: divide by zero encountered in divide\n", + ":89: RuntimeWarning: invalid value encountered in divide\n", + ":89: RuntimeWarning: divide by zero encountered in divide\n", + ":89: RuntimeWarning: invalid value encountered in divide\n" + ] + }, + { + "name": "stdout", + "output_type": "stream", + "text": [ + "BAM NN HPF CR Glut\n", + "N_contact_pairs = 109\n", + "N_noncontact_cell_pairs = 109\n", + "N_contact_pairs = 109\n", + "N_noncontact_cell_pairs = 109\n", + "Astroependymal NN Oligo NN\n", + "N_contact_pairs = 81\n", + "N_noncontact_cell_pairs = 81\n" + ] + }, + { + "name": "stderr", + "output_type": "stream", + "text": [ + ":89: RuntimeWarning: divide by zero encountered in divide\n", + ":89: RuntimeWarning: invalid value encountered in divide\n" + ] + }, + { + "name": "stdout", + "output_type": "stream", + "text": [ + "N_contact_pairs = 81\n", + "N_noncontact_cell_pairs = 81\n", + "CT SUB Glut NP SUB Glut\n", + "N_contact_pairs = 1529\n", + "N_noncontact_cell_pairs = 1529\n" + ] + }, + { + "name": "stderr", + "output_type": "stream", + "text": [ + ":89: RuntimeWarning: divide by zero encountered in divide\n", + ":89: RuntimeWarning: invalid value encountered in divide\n", + ":89: RuntimeWarning: divide by zero encountered in divide\n", + ":89: RuntimeWarning: invalid value encountered in divide\n", + ":89: RuntimeWarning: divide by zero encountered in divide\n", + ":89: RuntimeWarning: invalid value encountered in divide\n" + ] + }, + { + "name": "stdout", + "output_type": "stream", + "text": [ + "N_contact_pairs = 1529\n", + "N_noncontact_cell_pairs = 1529\n", + "ENTmv-PA-COAp Glut Lamp5 Lhx6 Gaba\n", + "N_contact_pairs = 57\n", + "N_noncontact_cell_pairs = 57\n", + "N_contact_pairs = 57\n", + "N_noncontact_cell_pairs = 57\n", + "Astro-TE NN Ependymal NN\n" + ] + }, + { + "name": "stderr", + "output_type": "stream", + "text": [ + ":89: RuntimeWarning: divide by zero encountered in divide\n", + ":89: RuntimeWarning: invalid value encountered in divide\n", + ":89: RuntimeWarning: divide by zero encountered in divide\n", + ":89: RuntimeWarning: invalid value encountered in divide\n" + ] + }, + { + "name": "stdout", + "output_type": "stream", + "text": [ + "N_contact_pairs = 562\n", + "N_noncontact_cell_pairs = 562\n" + ] + }, + { + "name": "stderr", + "output_type": "stream", + "text": [ + ":89: RuntimeWarning: divide by zero encountered in divide\n", + ":89: RuntimeWarning: invalid value encountered in divide\n" + ] + }, + { + "name": "stdout", + "output_type": "stream", + "text": [ + "N_contact_pairs = 562\n", + "N_noncontact_cell_pairs = 562\n" + ] + }, + { + "name": "stderr", + "output_type": "stream", + "text": [ + ":89: RuntimeWarning: divide by zero encountered in divide\n", + ":89: RuntimeWarning: invalid value encountered in divide\n", + ":89: RuntimeWarning: divide by zero encountered in divide\n", + ":89: RuntimeWarning: invalid value encountered in divide\n" + ] + }, + { + "name": "stdout", + "output_type": "stream", + "text": [ + "CA2-FC-IG Glut Sst Gaba\n", + "N_contact_pairs = 201\n", + "N_noncontact_cell_pairs = 201\n", + "N_contact_pairs = 201\n", + "N_noncontact_cell_pairs = 201\n" + ] + }, + { + "name": "stderr", + "output_type": "stream", + "text": [ + ":89: RuntimeWarning: divide by zero encountered in divide\n", + ":89: RuntimeWarning: invalid value encountered in divide\n" + ] + }, + { + "name": "stdout", + "output_type": "stream", + "text": [ + "BAM NN Microglia NN\n", + "N_contact_pairs = 278\n", + "N_noncontact_cell_pairs = 278\n" + ] + }, + { + "name": "stderr", + "output_type": "stream", + "text": [ + ":89: RuntimeWarning: divide by zero encountered in divide\n", + ":89: RuntimeWarning: invalid value encountered in divide\n" + ] + }, + { + "name": "stdout", + "output_type": "stream", + "text": [ + "N_contact_pairs = 278\n", + "N_noncontact_cell_pairs = 278\n", + "BAM NN Oligo NN\n" + ] + }, + { + "name": "stderr", + "output_type": "stream", + "text": [ + ":89: RuntimeWarning: divide by zero encountered in divide\n", + ":89: RuntimeWarning: invalid value encountered in divide\n" + ] + }, + { + "name": "stdout", + "output_type": "stream", + "text": [ + "N_contact_pairs = 444\n", + "N_noncontact_cell_pairs = 444\n" + ] + }, + { + "name": "stderr", + "output_type": "stream", + "text": [ + ":89: RuntimeWarning: divide by zero encountered in divide\n", + ":89: RuntimeWarning: invalid value encountered in divide\n" + ] + }, + { + "name": "stdout", + "output_type": "stream", + "text": [ + "N_contact_pairs = 444\n", + "N_noncontact_cell_pairs = 444\n", + "L5/6 IT TPE-ENT Glut Sst Gaba\n", + "N_contact_pairs = 527\n", + "N_noncontact_cell_pairs = 527\n" + ] + }, + { + "name": "stderr", + "output_type": "stream", + "text": [ + ":89: RuntimeWarning: divide by zero encountered in divide\n", + ":89: RuntimeWarning: invalid value encountered in divide\n", + ":89: RuntimeWarning: divide by zero encountered in divide\n", + ":89: RuntimeWarning: invalid value encountered in divide\n" + ] + }, + { + "name": "stdout", + "output_type": "stream", + "text": [ + "N_contact_pairs = 527\n", + "N_noncontact_cell_pairs = 527\n", + "Oligo NN Sncg Gaba\n" + ] + }, + { + "name": "stderr", + "output_type": "stream", + "text": [ + ":89: RuntimeWarning: divide by zero encountered in divide\n", + ":89: RuntimeWarning: invalid value encountered in divide\n" + ] + }, + { + "name": "stdout", + "output_type": "stream", + "text": [ + "N_contact_pairs = 508\n", + "N_noncontact_cell_pairs = 508\n" + ] + }, + { + "name": "stderr", + "output_type": "stream", + "text": [ + ":89: RuntimeWarning: divide by zero encountered in divide\n", + ":89: RuntimeWarning: invalid value encountered in divide\n" + ] + }, + { + "name": "stdout", + "output_type": "stream", + "text": [ + "N_contact_pairs = 508\n", + "N_noncontact_cell_pairs = 508\n", + "L5 PPP Glut Oligo NN\n", + "N_contact_pairs = 542\n", + "N_noncontact_cell_pairs = 542\n" + ] + }, + { + "name": "stderr", + "output_type": "stream", + "text": [ + ":89: RuntimeWarning: divide by zero encountered in divide\n", + ":89: RuntimeWarning: invalid value encountered in divide\n", + ":89: RuntimeWarning: divide by zero encountered in divide\n", + ":89: RuntimeWarning: invalid value encountered in divide\n" + ] + }, + { + "name": "stdout", + "output_type": "stream", + "text": [ + "N_contact_pairs = 542\n", + "N_noncontact_cell_pairs = 542\n", + "DG-PIR Ex IMN Peri NN\n", + "N_contact_pairs = 161\n", + "N_noncontact_cell_pairs = 161\n" + ] + }, + { + "name": "stderr", + "output_type": "stream", + "text": [ + ":89: RuntimeWarning: divide by zero encountered in divide\n", + ":89: RuntimeWarning: invalid value encountered in divide\n", + ":89: RuntimeWarning: divide by zero encountered in divide\n", + ":89: RuntimeWarning: invalid value encountered in divide\n" + ] + }, + { + "name": "stdout", + "output_type": "stream", + "text": [ + "N_contact_pairs = 161\n", + "N_noncontact_cell_pairs = 161\n" + ] + }, + { + "name": "stderr", + "output_type": "stream", + "text": [ + ":89: RuntimeWarning: divide by zero encountered in divide\n", + ":89: RuntimeWarning: invalid value encountered in divide\n" + ] + }, + { + "name": "stdout", + "output_type": "stream", + "text": [ + "Isocortex\n" + ] + }, + { + "name": "stderr", + "output_type": "stream", + "text": [ + ":25: ImplicitModificationWarning: Trying to modify attribute `.obs` of view, initializing view as actual.\n", + ":28: ImplicitModificationWarning: Trying to modify attribute `.obs` of view, initializing view as actual.\n" + ] + }, + { + "name": "stdout", + "output_type": "stream", + "text": [ + "L2/3 IT RSP Glut L2/3 IT RSP Glut\n", + "N_contact_pairs = 132057\n", + "N_noncontact_cell_pairs = 132057\n" + ] + }, + { + "name": "stderr", + "output_type": "stream", + "text": [ + ":89: RuntimeWarning: divide by zero encountered in divide\n", + ":89: RuntimeWarning: invalid value encountered in divide\n" + ] + }, + { + "name": "stdout", + "output_type": "stream", + "text": [ + "VLMC NN VLMC NN\n", + "N_contact_pairs = 11590\n", + "N_noncontact_cell_pairs = 11590\n" + ] + }, + { + "name": "stderr", + "output_type": "stream", + "text": [ + ":89: RuntimeWarning: divide by zero encountered in divide\n", + ":89: RuntimeWarning: invalid value encountered in divide\n" + ] + }, + { + "name": "stdout", + "output_type": "stream", + "text": [ + "L2/3 IT CTX Glut L2/3 IT CTX Glut\n", + "N_contact_pairs = 350216\n", + "N_noncontact_cell_pairs = 350216\n" + ] + }, + { + "name": "stderr", + "output_type": "stream", + "text": [ + ":89: RuntimeWarning: divide by zero encountered in divide\n", + ":89: RuntimeWarning: invalid value encountered in divide\n" + ] + }, + { + "name": "stdout", + "output_type": "stream", + "text": [ + "SMC NN SMC NN\n", + "N_contact_pairs = 4690\n", + "N_noncontact_cell_pairs = 4690\n" + ] + }, + { + "name": "stderr", + "output_type": "stream", + "text": [ + ":89: RuntimeWarning: divide by zero encountered in divide\n", + ":89: RuntimeWarning: invalid value encountered in divide\n" + ] + }, + { + "name": "stdout", + "output_type": "stream", + "text": [ + "SMC NN VLMC NN\n", + "N_contact_pairs = 6366\n", + "N_noncontact_cell_pairs = 6366\n" + ] + }, + { + "name": "stderr", + "output_type": "stream", + "text": [ + ":89: RuntimeWarning: divide by zero encountered in divide\n", + ":89: RuntimeWarning: invalid value encountered in divide\n" + ] + }, + { + "name": "stdout", + "output_type": "stream", + "text": [ + "N_contact_pairs = 6366\n", + "N_noncontact_cell_pairs = 6366\n" + ] + }, + { + "name": "stderr", + "output_type": "stream", + "text": [ + ":89: RuntimeWarning: divide by zero encountered in divide\n", + ":89: RuntimeWarning: invalid value encountered in divide\n" + ] + }, + { + "name": "stdout", + "output_type": "stream", + "text": [ + "ABC NN VLMC NN\n", + "N_contact_pairs = 5342\n", + "N_noncontact_cell_pairs = 5342\n" + ] + }, + { + "name": "stderr", + "output_type": "stream", + "text": [ + ":89: RuntimeWarning: divide by zero encountered in divide\n", + ":89: RuntimeWarning: invalid value encountered in divide\n" + ] + }, + { + "name": "stdout", + "output_type": "stream", + "text": [ + "N_contact_pairs = 5342\n", + "N_noncontact_cell_pairs = 5342\n", + "Endo NN SMC NN\n" + ] + }, + { + "name": "stderr", + "output_type": "stream", + "text": [ + ":89: RuntimeWarning: divide by zero encountered in divide\n", + ":89: RuntimeWarning: invalid value encountered in divide\n" + ] + }, + { + "name": "stdout", + "output_type": "stream", + "text": [ + "N_contact_pairs = 11990\n", + "N_noncontact_cell_pairs = 11990\n" + ] + }, + { + "name": "stderr", + "output_type": "stream", + "text": [ + ":89: RuntimeWarning: divide by zero encountered in divide\n", + ":89: RuntimeWarning: invalid value encountered in divide\n" + ] + }, + { + "name": "stdout", + "output_type": "stream", + "text": [ + "N_contact_pairs = 11990\n", + "N_noncontact_cell_pairs = 11990\n" + ] + }, + { + "name": "stderr", + "output_type": "stream", + "text": [ + ":89: RuntimeWarning: divide by zero encountered in divide\n", + ":89: RuntimeWarning: invalid value encountered in divide\n" + ] + }, + { + "name": "stdout", + "output_type": "stream", + "text": [ + "L4/5 IT CTX Glut L4/5 IT CTX Glut\n", + "N_contact_pairs = 395782\n", + "N_noncontact_cell_pairs = 395782\n" + ] + }, + { + "name": "stderr", + "output_type": "stream", + "text": [ + ":89: RuntimeWarning: divide by zero encountered in divide\n", + ":89: RuntimeWarning: invalid value encountered in divide\n" + ] + }, + { + "name": "stdout", + "output_type": "stream", + "text": [ + "Endo NN VLMC NN\n", + "N_contact_pairs = 18853\n", + "N_noncontact_cell_pairs = 18853\n" + ] + }, + { + "name": "stderr", + "output_type": "stream", + "text": [ + ":89: RuntimeWarning: divide by zero encountered in divide\n", + ":89: RuntimeWarning: invalid value encountered in divide\n" + ] + }, + { + "name": "stdout", + "output_type": "stream", + "text": [ + "N_contact_pairs = 18853\n", + "N_noncontact_cell_pairs = 18853\n" + ] + }, + { + "name": "stderr", + "output_type": "stream", + "text": [ + ":89: RuntimeWarning: divide by zero encountered in divide\n", + ":89: RuntimeWarning: invalid value encountered in divide\n" + ] + }, + { + "name": "stdout", + "output_type": "stream", + "text": [ + "ABC NN ABC NN\n", + "N_contact_pairs = 2569\n", + "N_noncontact_cell_pairs = 2569\n", + "BAM NN VLMC NN\n" + ] + }, + { + "name": "stderr", + "output_type": "stream", + "text": [ + ":89: RuntimeWarning: divide by zero encountered in divide\n", + ":89: RuntimeWarning: invalid value encountered in divide\n" + ] + }, + { + "name": "stdout", + "output_type": "stream", + "text": [ + "N_contact_pairs = 2870\n", + "N_noncontact_cell_pairs = 2870\n" + ] + }, + { + "name": "stderr", + "output_type": "stream", + "text": [ + ":89: RuntimeWarning: divide by zero encountered in divide\n", + ":89: RuntimeWarning: invalid value encountered in divide\n" + ] + }, + { + "name": "stdout", + "output_type": "stream", + "text": [ + "N_contact_pairs = 2870\n", + "N_noncontact_cell_pairs = 2870\n", + "Endo NN Peri NN\n" + ] + }, + { + "name": "stderr", + "output_type": "stream", + "text": [ + ":89: RuntimeWarning: divide by zero encountered in divide\n", + ":89: RuntimeWarning: invalid value encountered in divide\n" + ] + }, + { + "name": "stdout", + "output_type": "stream", + "text": [ + "N_contact_pairs = 23700\n", + "N_noncontact_cell_pairs = 23700\n" + ] + }, + { + "name": "stderr", + "output_type": "stream", + "text": [ + ":89: RuntimeWarning: divide by zero encountered in divide\n", + ":89: RuntimeWarning: invalid value encountered in divide\n" + ] + }, + { + "name": "stdout", + "output_type": "stream", + "text": [ + "N_contact_pairs = 23700\n", + "N_noncontact_cell_pairs = 23700\n" + ] + }, + { + "name": "stderr", + "output_type": "stream", + "text": [ + ":89: RuntimeWarning: divide by zero encountered in divide\n", + ":89: RuntimeWarning: invalid value encountered in divide\n" + ] + }, + { + "name": "stdout", + "output_type": "stream", + "text": [ + "BAM NN SMC NN\n", + "N_contact_pairs = 1402\n", + "N_noncontact_cell_pairs = 1402\n" + ] + }, + { + "name": "stderr", + "output_type": "stream", + "text": [ + ":89: RuntimeWarning: divide by zero encountered in divide\n", + ":89: RuntimeWarning: invalid value encountered in divide\n", + ":89: RuntimeWarning: divide by zero encountered in divide\n", + ":89: RuntimeWarning: invalid value encountered in divide\n" + ] + }, + { + "name": "stdout", + "output_type": "stream", + "text": [ + "N_contact_pairs = 1402\n", + "N_noncontact_cell_pairs = 1402\n", + "L6 CT CTX Glut L6 CT CTX Glut\n", + "N_contact_pairs = 188825\n", + "N_noncontact_cell_pairs = 188825\n" + ] + }, + { + "name": "stderr", + "output_type": "stream", + "text": [ + ":89: RuntimeWarning: divide by zero encountered in divide\n", + ":89: RuntimeWarning: invalid value encountered in divide\n" + ] + }, + { + "name": "stdout", + "output_type": "stream", + "text": [ + "Endo NN Endo NN\n", + "N_contact_pairs = 69931\n", + "N_noncontact_cell_pairs = 69931\n" + ] + }, + { + "name": "stderr", + "output_type": "stream", + "text": [ + ":89: RuntimeWarning: divide by zero encountered in divide\n", + ":89: RuntimeWarning: invalid value encountered in divide\n" + ] + }, + { + "name": "stdout", + "output_type": "stream", + "text": [ + "BAM NN Endo NN\n", + "N_contact_pairs = 4200\n", + "N_noncontact_cell_pairs = 4200\n" + ] + }, + { + "name": "stderr", + "output_type": "stream", + "text": [ + ":89: RuntimeWarning: divide by zero encountered in divide\n", + ":89: RuntimeWarning: invalid value encountered in divide\n" + ] + }, + { + "name": "stdout", + "output_type": "stream", + "text": [ + "N_contact_pairs = 4200\n", + "N_noncontact_cell_pairs = 4200\n" + ] + }, + { + "name": "stderr", + "output_type": "stream", + "text": [ + ":89: RuntimeWarning: divide by zero encountered in divide\n", + ":89: RuntimeWarning: invalid value encountered in divide\n" + ] + }, + { + "name": "stdout", + "output_type": "stream", + "text": [ + "L2/3 IT CTX Glut L2/3 IT RSP Glut\n", + "N_contact_pairs = 18492\n", + "N_noncontact_cell_pairs = 18492\n" + ] + }, + { + "name": "stderr", + "output_type": "stream", + "text": [ + ":89: RuntimeWarning: divide by zero encountered in divide\n", + ":89: RuntimeWarning: invalid value encountered in divide\n" + ] + }, + { + "name": "stdout", + "output_type": "stream", + "text": [ + "N_contact_pairs = 18492\n", + "N_noncontact_cell_pairs = 18492\n" + ] + }, + { + "name": "stderr", + "output_type": "stream", + "text": [ + ":89: RuntimeWarning: divide by zero encountered in divide\n", + ":89: RuntimeWarning: invalid value encountered in divide\n" + ] + }, + { + "name": "stdout", + "output_type": "stream", + "text": [ + "Astro-TE NN VLMC NN\n", + "N_contact_pairs = 14134\n", + "N_noncontact_cell_pairs = 14134\n" + ] + }, + { + "name": "stderr", + "output_type": "stream", + "text": [ + ":89: RuntimeWarning: divide by zero encountered in divide\n", + ":89: RuntimeWarning: invalid value encountered in divide\n" + ] + }, + { + "name": "stdout", + "output_type": "stream", + "text": [ + "N_contact_pairs = 14134\n", + "N_noncontact_cell_pairs = 14134\n" + ] + }, + { + "name": "stderr", + "output_type": "stream", + "text": [ + ":89: RuntimeWarning: divide by zero encountered in divide\n", + ":89: RuntimeWarning: invalid value encountered in divide\n" + ] + }, + { + "name": "stdout", + "output_type": "stream", + "text": [ + "OPC NN OPC NN\n", + "N_contact_pairs = 5057\n", + "N_noncontact_cell_pairs = 5057\n" + ] + }, + { + "name": "stderr", + "output_type": "stream", + "text": [ + ":89: RuntimeWarning: divide by zero encountered in divide\n", + ":89: RuntimeWarning: invalid value encountered in divide\n", + ":89: RuntimeWarning: divide by zero encountered in divide\n", + ":89: RuntimeWarning: invalid value encountered in divide\n" + ] + }, + { + "name": "stdout", + "output_type": "stream", + "text": [ + "OEC NN OEC NN\n", + "N_contact_pairs = 1374\n", + "N_noncontact_cell_pairs = 1374\n", + "L2/3 IT RSP Glut Vip Gaba\n", + "N_contact_pairs = 8014\n", + "N_noncontact_cell_pairs = 8014\n" + ] + }, + { + "name": "stderr", + "output_type": "stream", + "text": [ + ":89: RuntimeWarning: divide by zero encountered in divide\n", + ":89: RuntimeWarning: invalid value encountered in divide\n" + ] + }, + { + "name": "stdout", + "output_type": "stream", + "text": [ + "N_contact_pairs = 8014\n", + "N_noncontact_cell_pairs = 8014\n" + ] + }, + { + "name": "stderr", + "output_type": "stream", + "text": [ + ":89: RuntimeWarning: divide by zero encountered in divide\n", + ":89: RuntimeWarning: invalid value encountered in divide\n", + ":89: RuntimeWarning: divide by zero encountered in divide\n", + ":89: RuntimeWarning: invalid value encountered in divide\n" + ] + }, + { + "name": "stdout", + "output_type": "stream", + "text": [ + "BAM NN BAM NN\n", + "N_contact_pairs = 334\n", + "N_noncontact_cell_pairs = 334\n", + "L5 ET CTX Glut L5 ET CTX Glut\n", + "N_contact_pairs = 18117\n", + "N_noncontact_cell_pairs = 18117\n" + ] + }, + { + "name": "stderr", + "output_type": "stream", + "text": [ + ":89: RuntimeWarning: divide by zero encountered in divide\n", + ":89: RuntimeWarning: invalid value encountered in divide\n" + ] + }, + { + "name": "stdout", + "output_type": "stream", + "text": [ + "L5 NP CTX Glut L5 NP CTX Glut\n", + "N_contact_pairs = 6819\n", + "N_noncontact_cell_pairs = 6819\n" + ] + }, + { + "name": "stderr", + "output_type": "stream", + "text": [ + ":89: RuntimeWarning: divide by zero encountered in divide\n", + ":89: RuntimeWarning: invalid value encountered in divide\n" + ] + }, + { + "name": "stdout", + "output_type": "stream", + "text": [ + "Oligo NN Oligo NN\n", + "N_contact_pairs = 25455\n", + "N_noncontact_cell_pairs = 25455\n" + ] + }, + { + "name": "stderr", + "output_type": "stream", + "text": [ + ":89: RuntimeWarning: divide by zero encountered in divide\n", + ":89: RuntimeWarning: invalid value encountered in divide\n" + ] + }, + { + "name": "stdout", + "output_type": "stream", + "text": [ + "L2/3 IT CTX Glut Vip Gaba\n", + "N_contact_pairs = 35903\n", + "N_noncontact_cell_pairs = 35903\n" + ] + }, + { + "name": "stderr", + "output_type": "stream", + "text": [ + ":89: RuntimeWarning: divide by zero encountered in divide\n", + ":89: RuntimeWarning: invalid value encountered in divide\n" + ] + }, + { + "name": "stdout", + "output_type": "stream", + "text": [ + "N_contact_pairs = 35903\n", + "N_noncontact_cell_pairs = 35903\n" + ] + }, + { + "name": "stderr", + "output_type": "stream", + "text": [ + ":89: RuntimeWarning: divide by zero encountered in divide\n", + ":89: RuntimeWarning: invalid value encountered in divide\n" + ] + }, + { + "name": "stdout", + "output_type": "stream", + "text": [ + "Vip Gaba Vip Gaba\n", + "N_contact_pairs = 2301\n", + "N_noncontact_cell_pairs = 2301\n", + "L5 IT CTX Glut L5 IT CTX Glut\n" + ] + }, + { + "name": "stderr", + "output_type": "stream", + "text": [ + ":89: RuntimeWarning: divide by zero encountered in divide\n", + ":89: RuntimeWarning: invalid value encountered in divide\n" + ] + }, + { + "name": "stdout", + "output_type": "stream", + "text": [ + "N_contact_pairs = 15880\n", + "N_noncontact_cell_pairs = 15880\n" + ] + }, + { + "name": "stderr", + "output_type": "stream", + "text": [ + ":89: RuntimeWarning: divide by zero encountered in divide\n", + ":89: RuntimeWarning: invalid value encountered in divide\n" + ] + }, + { + "name": "stdout", + "output_type": "stream", + "text": [ + "L6 IT CTX Glut L6 IT CTX Glut\n", + "N_contact_pairs = 23405\n", + "N_noncontact_cell_pairs = 23405\n" + ] + }, + { + "name": "stderr", + "output_type": "stream", + "text": [ + ":89: RuntimeWarning: divide by zero encountered in divide\n", + ":89: RuntimeWarning: invalid value encountered in divide\n" + ] + }, + { + "name": "stdout", + "output_type": "stream", + "text": [ + "ABC NN BAM NN\n", + "N_contact_pairs = 431\n", + "N_noncontact_cell_pairs = 431\n" + ] + }, + { + "name": "stderr", + "output_type": "stream", + "text": [ + ":89: RuntimeWarning: divide by zero encountered in divide\n", + ":89: RuntimeWarning: invalid value encountered in divide\n", + ":89: RuntimeWarning: divide by zero encountered in divide\n", + ":89: RuntimeWarning: invalid value encountered in divide\n" + ] + }, + { + "name": "stdout", + "output_type": "stream", + "text": [ + "N_contact_pairs = 431\n", + "N_noncontact_cell_pairs = 431\n", + "Lamp5 Gaba Lamp5 Gaba\n", + "N_contact_pairs = 1769\n", + "N_noncontact_cell_pairs = 1769\n", + "Astro-TE NN Endo NN\n" + ] + }, + { + "name": "stderr", + "output_type": "stream", + "text": [ + ":89: RuntimeWarning: divide by zero encountered in divide\n", + ":89: RuntimeWarning: invalid value encountered in divide\n" + ] + }, + { + "name": "stdout", + "output_type": "stream", + "text": [ + "N_contact_pairs = 93145\n", + "N_noncontact_cell_pairs = 93145\n" + ] + }, + { + "name": "stderr", + "output_type": "stream", + "text": [ + ":89: RuntimeWarning: divide by zero encountered in divide\n", + ":89: RuntimeWarning: invalid value encountered in divide\n" + ] + }, + { + "name": "stdout", + "output_type": "stream", + "text": [ + "N_contact_pairs = 93145\n", + "N_noncontact_cell_pairs = 93145\n" + ] + }, + { + "name": "stderr", + "output_type": "stream", + "text": [ + ":89: RuntimeWarning: divide by zero encountered in divide\n", + ":89: RuntimeWarning: invalid value encountered in divide\n" + ] + }, + { + "name": "stdout", + "output_type": "stream", + "text": [ + "Sst Gaba Sst Gaba\n", + "N_contact_pairs = 4282\n", + "N_noncontact_cell_pairs = 4282\n" + ] + }, + { + "name": "stderr", + "output_type": "stream", + "text": [ + ":89: RuntimeWarning: divide by zero encountered in divide\n", + ":89: RuntimeWarning: invalid value encountered in divide\n" + ] + }, + { + "name": "stdout", + "output_type": "stream", + "text": [ + "CLA-EPd-CTX Car3 Glut CLA-EPd-CTX Car3 Glut\n", + "N_contact_pairs = 8399\n", + "N_noncontact_cell_pairs = 8399\n" + ] + }, + { + "name": "stderr", + "output_type": "stream", + "text": [ + ":89: RuntimeWarning: divide by zero encountered in divide\n", + ":89: RuntimeWarning: invalid value encountered in divide\n" + ] + }, + { + "name": "stdout", + "output_type": "stream", + "text": [ + "Endo NN Microglia NN\n", + "N_contact_pairs = 43753\n", + "N_noncontact_cell_pairs = 43753\n" + ] + }, + { + "name": "stderr", + "output_type": "stream", + "text": [ + ":89: RuntimeWarning: divide by zero encountered in divide\n", + ":89: RuntimeWarning: invalid value encountered in divide\n" + ] + }, + { + "name": "stdout", + "output_type": "stream", + "text": [ + "N_contact_pairs = 43753\n", + "N_noncontact_cell_pairs = 43753\n" + ] + }, + { + "name": "stderr", + "output_type": "stream", + "text": [ + ":89: RuntimeWarning: divide by zero encountered in divide\n", + ":89: RuntimeWarning: invalid value encountered in divide\n" + ] + }, + { + "name": "stdout", + "output_type": "stream", + "text": [ + "Peri NN VLMC NN\n", + "N_contact_pairs = 1826\n", + "N_noncontact_cell_pairs = 1826\n" + ] + }, + { + "name": "stderr", + "output_type": "stream", + "text": [ + ":89: RuntimeWarning: divide by zero encountered in divide\n", + ":89: RuntimeWarning: invalid value encountered in divide\n" + ] + }, + { + "name": "stdout", + "output_type": "stream", + "text": [ + "N_contact_pairs = 1826\n", + "N_noncontact_cell_pairs = 1826\n", + "ABC NN SMC NN\n" + ] + }, + { + "name": "stderr", + "output_type": "stream", + "text": [ + ":89: RuntimeWarning: divide by zero encountered in divide\n", + ":89: RuntimeWarning: invalid value encountered in divide\n", + ":89: RuntimeWarning: divide by zero encountered in divide\n", + ":89: RuntimeWarning: invalid value encountered in divide\n" + ] + }, + { + "name": "stdout", + "output_type": "stream", + "text": [ + "N_contact_pairs = 541\n", + "N_noncontact_cell_pairs = 541\n", + "N_contact_pairs = 541\n", + "N_noncontact_cell_pairs = 541\n" + ] + }, + { + "name": "stderr", + "output_type": "stream", + "text": [ + ":89: RuntimeWarning: divide by zero encountered in divide\n", + ":89: RuntimeWarning: invalid value encountered in divide\n", + ":89: RuntimeWarning: divide by zero encountered in divide\n", + ":89: RuntimeWarning: invalid value encountered in divide\n" + ] + }, + { + "name": "stdout", + "output_type": "stream", + "text": [ + "DC NN VLMC NN\n", + "N_contact_pairs = 186\n", + "N_noncontact_cell_pairs = 186\n", + "N_contact_pairs = 186\n", + "N_noncontact_cell_pairs = 186\n", + "Lymphoid NN VLMC NN\n" + ] + }, + { + "name": "stderr", + "output_type": "stream", + "text": [ + ":89: RuntimeWarning: divide by zero encountered in divide\n", + ":89: RuntimeWarning: invalid value encountered in divide\n" + ] + }, + { + "name": "stdout", + "output_type": "stream", + "text": [ + "N_contact_pairs = 239\n", + "N_noncontact_cell_pairs = 239\n" + ] + }, + { + "name": "stderr", + "output_type": "stream", + "text": [ + ":89: RuntimeWarning: divide by zero encountered in divide\n", + ":89: RuntimeWarning: invalid value encountered in divide\n" + ] + }, + { + "name": "stdout", + "output_type": "stream", + "text": [ + "N_contact_pairs = 239\n", + "N_noncontact_cell_pairs = 239\n", + "ABC NN Endo NN\n" + ] + }, + { + "name": "stderr", + "output_type": "stream", + "text": [ + ":89: RuntimeWarning: divide by zero encountered in divide\n", + ":89: RuntimeWarning: invalid value encountered in divide\n" + ] + }, + { + "name": "stdout", + "output_type": "stream", + "text": [ + "N_contact_pairs = 2553\n", + "N_noncontact_cell_pairs = 2553\n" + ] + }, + { + "name": "stderr", + "output_type": "stream", + "text": [ + ":89: RuntimeWarning: divide by zero encountered in divide\n", + ":89: RuntimeWarning: invalid value encountered in divide\n" + ] + }, + { + "name": "stdout", + "output_type": "stream", + "text": [ + "N_contact_pairs = 2553\n", + "N_noncontact_cell_pairs = 2553\n" + ] + }, + { + "name": "stderr", + "output_type": "stream", + "text": [ + ":89: RuntimeWarning: divide by zero encountered in divide\n", + ":89: RuntimeWarning: invalid value encountered in divide\n", + ":89: RuntimeWarning: divide by zero encountered in divide\n", + ":89: RuntimeWarning: invalid value encountered in divide\n" + ] + }, + { + "name": "stdout", + "output_type": "stream", + "text": [ + "Sncg Gaba Sncg Gaba\n", + "N_contact_pairs = 213\n", + "N_noncontact_cell_pairs = 213\n", + "Peri NN Peri NN\n", + "N_contact_pairs = 1468\n", + "N_noncontact_cell_pairs = 1468\n", + "Lymphoid NN Lymphoid NN\n", + "N_contact_pairs = 47\n", + "N_noncontact_cell_pairs = 47\n", + "Astro-TE NN Lamp5 Gaba\n" + ] + }, + { + "name": "stderr", + "output_type": "stream", + "text": [ + ":89: RuntimeWarning: divide by zero encountered in divide\n", + ":89: RuntimeWarning: invalid value encountered in divide\n", + ":89: RuntimeWarning: divide by zero encountered in divide\n", + ":89: RuntimeWarning: invalid value encountered in divide\n" + ] + }, + { + "name": "stdout", + "output_type": "stream", + "text": [ + "N_contact_pairs = 11362\n", + "N_noncontact_cell_pairs = 11362\n" + ] + }, + { + "name": "stderr", + "output_type": "stream", + "text": [ + ":89: RuntimeWarning: divide by zero encountered in divide\n", + ":89: RuntimeWarning: invalid value encountered in divide\n" + ] + }, + { + "name": "stdout", + "output_type": "stream", + "text": [ + "N_contact_pairs = 11362\n", + "N_noncontact_cell_pairs = 11362\n" + ] + }, + { + "name": "stderr", + "output_type": "stream", + "text": [ + ":89: RuntimeWarning: divide by zero encountered in divide\n", + ":89: RuntimeWarning: invalid value encountered in divide\n", + ":89: RuntimeWarning: divide by zero encountered in divide\n", + ":89: RuntimeWarning: invalid value encountered in divide\n" + ] + }, + { + "name": "stdout", + "output_type": "stream", + "text": [ + "DC NN SMC NN\n", + "N_contact_pairs = 85\n", + "N_noncontact_cell_pairs = 85\n", + "N_contact_pairs = 85\n", + "N_noncontact_cell_pairs = 85\n" + ] + }, + { + "name": "stderr", + "output_type": "stream", + "text": [ + ":89: RuntimeWarning: divide by zero encountered in divide\n", + ":89: RuntimeWarning: invalid value encountered in divide\n", + ":89: RuntimeWarning: divide by zero encountered in divide\n", + ":89: RuntimeWarning: invalid value encountered in divide\n" + ] + }, + { + "name": "stdout", + "output_type": "stream", + "text": [ + "L4 RSP-ACA Glut L4 RSP-ACA Glut\n", + "N_contact_pairs = 2819\n", + "N_noncontact_cell_pairs = 2819\n", + "Astro-TE NN SMC NN\n", + "N_contact_pairs = 5112\n", + "N_noncontact_cell_pairs = 5112\n" + ] + }, + { + "name": "stderr", + "output_type": "stream", + "text": [ + ":89: RuntimeWarning: divide by zero encountered in divide\n", + ":89: RuntimeWarning: invalid value encountered in divide\n" + ] + }, + { + "name": "stdout", + "output_type": "stream", + "text": [ + "N_contact_pairs = 5112\n", + "N_noncontact_cell_pairs = 5112\n" + ] + }, + { + "name": "stderr", + "output_type": "stream", + "text": [ + ":89: RuntimeWarning: divide by zero encountered in divide\n", + ":89: RuntimeWarning: invalid value encountered in divide\n" + ] + }, + { + "name": "stdout", + "output_type": "stream", + "text": [ + "ABC NN Astro-TE NN\n", + "N_contact_pairs = 2470\n", + "N_noncontact_cell_pairs = 2470\n" + ] + }, + { + "name": "stderr", + "output_type": "stream", + "text": [ + ":89: RuntimeWarning: divide by zero encountered in divide\n", + ":89: RuntimeWarning: invalid value encountered in divide\n" + ] + }, + { + "name": "stdout", + "output_type": "stream", + "text": [ + "N_contact_pairs = 2470\n", + "N_noncontact_cell_pairs = 2470\n" + ] + }, + { + "name": "stderr", + "output_type": "stream", + "text": [ + ":89: RuntimeWarning: divide by zero encountered in divide\n", + ":89: RuntimeWarning: invalid value encountered in divide\n" + ] + }, + { + "name": "stdout", + "output_type": "stream", + "text": [ + "Astro-TE NN Astro-TE NN\n", + "N_contact_pairs = 40289\n", + "N_noncontact_cell_pairs = 40289\n" + ] + }, + { + "name": "stderr", + "output_type": "stream", + "text": [ + ":89: RuntimeWarning: divide by zero encountered in divide\n", + ":89: RuntimeWarning: invalid value encountered in divide\n" + ] + }, + { + "name": "stdout", + "output_type": "stream", + "text": [ + "Astro-TE NN BAM NN\n", + "N_contact_pairs = 2178\n", + "N_noncontact_cell_pairs = 2178\n" + ] + }, + { + "name": "stderr", + "output_type": "stream", + "text": [ + ":89: RuntimeWarning: divide by zero encountered in divide\n", + ":89: RuntimeWarning: invalid value encountered in divide\n" + ] + }, + { + "name": "stdout", + "output_type": "stream", + "text": [ + "N_contact_pairs = 2178\n", + "N_noncontact_cell_pairs = 2178\n" + ] + }, + { + "name": "stderr", + "output_type": "stream", + "text": [ + ":89: RuntimeWarning: divide by zero encountered in divide\n", + ":89: RuntimeWarning: invalid value encountered in divide\n" + ] + }, + { + "name": "stdout", + "output_type": "stream", + "text": [ + "CLA-EPd-CTX Car3 Glut L2/3 IT RSP Glut\n", + "N_contact_pairs = 630\n", + "N_noncontact_cell_pairs = 630\n" + ] + }, + { + "name": "stderr", + "output_type": "stream", + "text": [ + ":89: RuntimeWarning: divide by zero encountered in divide\n", + ":89: RuntimeWarning: invalid value encountered in divide\n" + ] + }, + { + "name": "stdout", + "output_type": "stream", + "text": [ + "N_contact_pairs = 630\n", + "N_noncontact_cell_pairs = 630\n", + "Pvalb Gaba Pvalb Gaba\n" + ] + }, + { + "name": "stderr", + "output_type": "stream", + "text": [ + ":89: RuntimeWarning: divide by zero encountered in divide\n", + ":89: RuntimeWarning: invalid value encountered in divide\n" + ] + }, + { + "name": "stdout", + "output_type": "stream", + "text": [ + "N_contact_pairs = 6391\n", + "N_noncontact_cell_pairs = 6391\n" + ] + }, + { + "name": "stderr", + "output_type": "stream", + "text": [ + ":89: RuntimeWarning: divide by zero encountered in divide\n", + ":89: RuntimeWarning: invalid value encountered in divide\n" + ] + }, + { + "name": "stdout", + "output_type": "stream", + "text": [ + "Astro-TE NN Oligo NN\n", + "N_contact_pairs = 36607\n", + "N_noncontact_cell_pairs = 36607\n" + ] + }, + { + "name": "stderr", + "output_type": "stream", + "text": [ + ":89: RuntimeWarning: divide by zero encountered in divide\n", + ":89: RuntimeWarning: invalid value encountered in divide\n" + ] + }, + { + "name": "stdout", + "output_type": "stream", + "text": [ + "N_contact_pairs = 36607\n", + "N_noncontact_cell_pairs = 36607\n" + ] + }, + { + "name": "stderr", + "output_type": "stream", + "text": [ + ":89: RuntimeWarning: divide by zero encountered in divide\n", + ":89: RuntimeWarning: invalid value encountered in divide\n" + ] + }, + { + "name": "stdout", + "output_type": "stream", + "text": [ + "Endo NN Lymphoid NN\n", + "N_contact_pairs = 812\n", + "N_noncontact_cell_pairs = 812\n" + ] + }, + { + "name": "stderr", + "output_type": "stream", + "text": [ + ":89: RuntimeWarning: divide by zero encountered in divide\n", + ":89: RuntimeWarning: invalid value encountered in divide\n" + ] + }, + { + "name": "stdout", + "output_type": "stream", + "text": [ + "N_contact_pairs = 812\n", + "N_noncontact_cell_pairs = 812\n" + ] + }, + { + "name": "stderr", + "output_type": "stream", + "text": [ + ":89: RuntimeWarning: divide by zero encountered in divide\n", + ":89: RuntimeWarning: invalid value encountered in divide\n" + ] + }, + { + "name": "stdout", + "output_type": "stream", + "text": [ + "Astro-TE NN Microglia NN\n", + "N_contact_pairs = 33071\n", + "N_noncontact_cell_pairs = 33071\n" + ] + }, + { + "name": "stderr", + "output_type": "stream", + "text": [ + ":89: RuntimeWarning: divide by zero encountered in divide\n", + ":89: RuntimeWarning: invalid value encountered in divide\n" + ] + }, + { + "name": "stdout", + "output_type": "stream", + "text": [ + "N_contact_pairs = 33071\n", + "N_noncontact_cell_pairs = 33071\n" + ] + }, + { + "name": "stderr", + "output_type": "stream", + "text": [ + ":89: RuntimeWarning: divide by zero encountered in divide\n", + ":89: RuntimeWarning: invalid value encountered in divide\n" + ] + }, + { + "name": "stdout", + "output_type": "stream", + "text": [ + "Microglia NN Peri NN\n", + "N_contact_pairs = 5918\n", + "N_noncontact_cell_pairs = 5918\n" + ] + }, + { + "name": "stderr", + "output_type": "stream", + "text": [ + ":89: RuntimeWarning: divide by zero encountered in divide\n", + ":89: RuntimeWarning: invalid value encountered in divide\n" + ] + }, + { + "name": "stdout", + "output_type": "stream", + "text": [ + "N_contact_pairs = 5918\n", + "N_noncontact_cell_pairs = 5918\n" + ] + }, + { + "name": "stderr", + "output_type": "stream", + "text": [ + ":89: RuntimeWarning: divide by zero encountered in divide\n", + ":89: RuntimeWarning: invalid value encountered in divide\n", + ":89: RuntimeWarning: divide by zero encountered in divide\n", + ":89: RuntimeWarning: invalid value encountered in divide\n" + ] + }, + { + "name": "stdout", + "output_type": "stream", + "text": [ + "Lymphoid NN SMC NN\n", + "N_contact_pairs = 81\n", + "N_noncontact_cell_pairs = 81\n", + "N_contact_pairs = 81\n", + "N_noncontact_cell_pairs = 81\n", + "Endo NN Oligo NN\n" + ] + }, + { + "name": "stderr", + "output_type": "stream", + "text": [ + ":89: RuntimeWarning: divide by zero encountered in divide\n", + ":89: RuntimeWarning: invalid value encountered in divide\n" + ] + }, + { + "name": "stdout", + "output_type": "stream", + "text": [ + "N_contact_pairs = 47341\n", + "N_noncontact_cell_pairs = 47341\n" + ] + }, + { + "name": "stderr", + "output_type": "stream", + "text": [ + ":89: RuntimeWarning: divide by zero encountered in divide\n", + ":89: RuntimeWarning: invalid value encountered in divide\n" + ] + }, + { + "name": "stdout", + "output_type": "stream", + "text": [ + "N_contact_pairs = 47341\n", + "N_noncontact_cell_pairs = 47341\n" + ] + }, + { + "name": "stderr", + "output_type": "stream", + "text": [ + ":89: RuntimeWarning: divide by zero encountered in divide\n", + ":89: RuntimeWarning: invalid value encountered in divide\n" + ] + }, + { + "name": "stdout", + "output_type": "stream", + "text": [ + "DC NN Endo NN\n", + "N_contact_pairs = 221\n", + "N_noncontact_cell_pairs = 221\n" + ] + }, + { + "name": "stderr", + "output_type": "stream", + "text": [ + ":89: RuntimeWarning: divide by zero encountered in divide\n", + ":89: RuntimeWarning: invalid value encountered in divide\n" + ] + }, + { + "name": "stdout", + "output_type": "stream", + "text": [ + "N_contact_pairs = 221\n", + "N_noncontact_cell_pairs = 221\n" + ] + }, + { + "name": "stderr", + "output_type": "stream", + "text": [ + ":89: RuntimeWarning: divide by zero encountered in divide\n", + ":89: RuntimeWarning: invalid value encountered in divide\n" + ] + }, + { + "name": "stdout", + "output_type": "stream", + "text": [ + "L5 ET CTX Glut L5 NP CTX Glut\n", + "N_contact_pairs = 14208\n", + "N_noncontact_cell_pairs = 14208\n" + ] + }, + { + "name": "stderr", + "output_type": "stream", + "text": [ + ":89: RuntimeWarning: divide by zero encountered in divide\n", + ":89: RuntimeWarning: invalid value encountered in divide\n" + ] + }, + { + "name": "stdout", + "output_type": "stream", + "text": [ + "N_contact_pairs = 14208\n", + "N_noncontact_cell_pairs = 14208\n" + ] + }, + { + "name": "stderr", + "output_type": "stream", + "text": [ + ":89: RuntimeWarning: divide by zero encountered in divide\n", + ":89: RuntimeWarning: invalid value encountered in divide\n" + ] + }, + { + "name": "stdout", + "output_type": "stream", + "text": [ + "L2/3 IT CTX Glut Sncg Gaba\n", + "N_contact_pairs = 6468\n", + "N_noncontact_cell_pairs = 6468\n" + ] + }, + { + "name": "stderr", + "output_type": "stream", + "text": [ + ":89: RuntimeWarning: divide by zero encountered in divide\n", + ":89: RuntimeWarning: invalid value encountered in divide\n" + ] + }, + { + "name": "stdout", + "output_type": "stream", + "text": [ + "N_contact_pairs = 6468\n", + "N_noncontact_cell_pairs = 6468\n" + ] + }, + { + "name": "stderr", + "output_type": "stream", + "text": [ + ":89: RuntimeWarning: divide by zero encountered in divide\n", + ":89: RuntimeWarning: invalid value encountered in divide\n", + ":89: RuntimeWarning: divide by zero encountered in divide\n", + ":89: RuntimeWarning: invalid value encountered in divide\n" + ] + }, + { + "name": "stdout", + "output_type": "stream", + "text": [ + "ABC NN Lymphoid NN\n", + "N_contact_pairs = 54\n", + "N_noncontact_cell_pairs = 54\n", + "N_contact_pairs = 54\n", + "N_noncontact_cell_pairs = 54\n", + "Astro-TE NN OPC NN\n" + ] + }, + { + "name": "stderr", + "output_type": "stream", + "text": [ + ":89: RuntimeWarning: divide by zero encountered in divide\n", + ":89: RuntimeWarning: invalid value encountered in divide\n" + ] + }, + { + "name": "stdout", + "output_type": "stream", + "text": [ + "N_contact_pairs = 20136\n", + "N_noncontact_cell_pairs = 20136\n" + ] + }, + { + "name": "stderr", + "output_type": "stream", + "text": [ + ":89: RuntimeWarning: divide by zero encountered in divide\n", + ":89: RuntimeWarning: invalid value encountered in divide\n" + ] + }, + { + "name": "stdout", + "output_type": "stream", + "text": [ + "N_contact_pairs = 20136\n", + "N_noncontact_cell_pairs = 20136\n" + ] + }, + { + "name": "stderr", + "output_type": "stream", + "text": [ + ":89: RuntimeWarning: divide by zero encountered in divide\n", + ":89: RuntimeWarning: invalid value encountered in divide\n" + ] + }, + { + "name": "stdout", + "output_type": "stream", + "text": [ + "BAM NN Peri NN\n", + "N_contact_pairs = 338\n", + "N_noncontact_cell_pairs = 338\n" + ] + }, + { + "name": "stderr", + "output_type": "stream", + "text": [ + ":89: RuntimeWarning: divide by zero encountered in divide\n", + ":89: RuntimeWarning: invalid value encountered in divide\n" + ] + }, + { + "name": "stdout", + "output_type": "stream", + "text": [ + "N_contact_pairs = 338\n", + "N_noncontact_cell_pairs = 338\n", + "Lymphoid NN Peri NN\n" + ] + }, + { + "name": "stderr", + "output_type": "stream", + "text": [ + ":89: RuntimeWarning: divide by zero encountered in divide\n", + ":89: RuntimeWarning: invalid value encountered in divide\n" + ] + }, + { + "name": "stdout", + "output_type": "stream", + "text": [ + "N_contact_pairs = 131\n", + "N_noncontact_cell_pairs = 131\n" + ] + }, + { + "name": "stderr", + "output_type": "stream", + "text": [ + ":89: RuntimeWarning: divide by zero encountered in divide\n", + ":89: RuntimeWarning: invalid value encountered in divide\n" + ] + }, + { + "name": "stdout", + "output_type": "stream", + "text": [ + "N_contact_pairs = 131\n", + "N_noncontact_cell_pairs = 131\n", + "Astro-TE NN Peri NN\n" + ] + }, + { + "name": "stderr", + "output_type": "stream", + "text": [ + ":89: RuntimeWarning: divide by zero encountered in divide\n", + ":89: RuntimeWarning: invalid value encountered in divide\n" + ] + }, + { + "name": "stdout", + "output_type": "stream", + "text": [ + "N_contact_pairs = 11660\n", + "N_noncontact_cell_pairs = 11660\n" + ] + }, + { + "name": "stderr", + "output_type": "stream", + "text": [ + ":89: RuntimeWarning: divide by zero encountered in divide\n", + ":89: RuntimeWarning: invalid value encountered in divide\n" + ] + }, + { + "name": "stdout", + "output_type": "stream", + "text": [ + "N_contact_pairs = 11660\n", + "N_noncontact_cell_pairs = 11660\n" + ] + }, + { + "name": "stderr", + "output_type": "stream", + "text": [ + ":89: RuntimeWarning: divide by zero encountered in divide\n", + ":89: RuntimeWarning: invalid value encountered in divide\n" + ] + }, + { + "name": "stdout", + "output_type": "stream", + "text": [ + "L6 CT CTX Glut Oligo NN\n", + "N_contact_pairs = 75560\n", + "N_noncontact_cell_pairs = 75560\n" + ] + }, + { + "name": "stderr", + "output_type": "stream", + "text": [ + ":89: RuntimeWarning: divide by zero encountered in divide\n", + ":89: RuntimeWarning: invalid value encountered in divide\n" + ] + }, + { + "name": "stdout", + "output_type": "stream", + "text": [ + "N_contact_pairs = 75560\n", + "N_noncontact_cell_pairs = 75560\n" + ] + }, + { + "name": "stderr", + "output_type": "stream", + "text": [ + ":89: RuntimeWarning: divide by zero encountered in divide\n", + ":89: RuntimeWarning: invalid value encountered in divide\n" + ] + }, + { + "name": "stdout", + "output_type": "stream", + "text": [ + "Lamp5 Gaba OPC NN\n", + "N_contact_pairs = 2552\n", + "N_noncontact_cell_pairs = 2552\n" + ] + }, + { + "name": "stderr", + "output_type": "stream", + "text": [ + ":89: RuntimeWarning: divide by zero encountered in divide\n", + ":89: RuntimeWarning: invalid value encountered in divide\n" + ] + }, + { + "name": "stdout", + "output_type": "stream", + "text": [ + "N_contact_pairs = 2552\n", + "N_noncontact_cell_pairs = 2552\n" + ] + }, + { + "name": "stderr", + "output_type": "stream", + "text": [ + ":89: RuntimeWarning: divide by zero encountered in divide\n", + ":89: RuntimeWarning: invalid value encountered in divide\n" + ] + }, + { + "name": "stdout", + "output_type": "stream", + "text": [ + "L2/3 IT RSP Glut Sst Gaba\n", + "N_contact_pairs = 3237\n", + "N_noncontact_cell_pairs = 3237\n" + ] + }, + { + "name": "stderr", + "output_type": "stream", + "text": [ + ":89: RuntimeWarning: divide by zero encountered in divide\n", + ":89: RuntimeWarning: invalid value encountered in divide\n" + ] + }, + { + "name": "stdout", + "output_type": "stream", + "text": [ + "N_contact_pairs = 3237\n", + "N_noncontact_cell_pairs = 3237\n" + ] + }, + { + "name": "stderr", + "output_type": "stream", + "text": [ + ":89: RuntimeWarning: divide by zero encountered in divide\n", + ":89: RuntimeWarning: invalid value encountered in divide\n" + ] + }, + { + "name": "stdout", + "output_type": "stream", + "text": [ + "L5 ET CTX Glut Pvalb Gaba\n", + "N_contact_pairs = 12488\n", + "N_noncontact_cell_pairs = 12488\n" + ] + }, + { + "name": "stderr", + "output_type": "stream", + "text": [ + ":89: RuntimeWarning: divide by zero encountered in divide\n", + ":89: RuntimeWarning: invalid value encountered in divide\n" + ] + }, + { + "name": "stdout", + "output_type": "stream", + "text": [ + "N_contact_pairs = 12488\n", + "N_noncontact_cell_pairs = 12488\n" + ] + }, + { + "name": "stderr", + "output_type": "stream", + "text": [ + ":89: RuntimeWarning: divide by zero encountered in divide\n", + ":89: RuntimeWarning: invalid value encountered in divide\n" + ] + }, + { + "name": "stdout", + "output_type": "stream", + "text": [ + "ABC NN Peri NN\n", + "N_contact_pairs = 265\n", + "N_noncontact_cell_pairs = 265\n" + ] + }, + { + "name": "stderr", + "output_type": "stream", + "text": [ + ":89: RuntimeWarning: divide by zero encountered in divide\n", + ":89: RuntimeWarning: invalid value encountered in divide\n" + ] + }, + { + "name": "stdout", + "output_type": "stream", + "text": [ + "N_contact_pairs = 265\n", + "N_noncontact_cell_pairs = 265\n", + "Lamp5 Gaba Microglia NN\n" + ] + }, + { + "name": "stderr", + "output_type": "stream", + "text": [ + ":89: RuntimeWarning: divide by zero encountered in divide\n", + ":89: RuntimeWarning: invalid value encountered in divide\n" + ] + }, + { + "name": "stdout", + "output_type": "stream", + "text": [ + "N_contact_pairs = 4023\n", + "N_noncontact_cell_pairs = 4023\n" + ] + }, + { + "name": "stderr", + "output_type": "stream", + "text": [ + ":89: RuntimeWarning: divide by zero encountered in divide\n", + ":89: RuntimeWarning: invalid value encountered in divide\n" + ] + }, + { + "name": "stdout", + "output_type": "stream", + "text": [ + "N_contact_pairs = 4023\n", + "N_noncontact_cell_pairs = 4023\n" + ] + }, + { + "name": "stderr", + "output_type": "stream", + "text": [ + ":89: RuntimeWarning: divide by zero encountered in divide\n", + ":89: RuntimeWarning: invalid value encountered in divide\n", + ":89: RuntimeWarning: divide by zero encountered in divide\n", + ":89: RuntimeWarning: invalid value encountered in divide\n" + ] + }, + { + "name": "stdout", + "output_type": "stream", + "text": [ + "OEC NN VLMC NN\n", + "N_contact_pairs = 175\n", + "N_noncontact_cell_pairs = 175\n", + "N_contact_pairs = 175\n", + "N_noncontact_cell_pairs = 175\n", + "L2/3 IT RSP Glut Sncg Gaba\n" + ] + }, + { + "name": "stderr", + "output_type": "stream", + "text": [ + ":89: RuntimeWarning: divide by zero encountered in divide\n", + ":89: RuntimeWarning: invalid value encountered in divide\n" + ] + }, + { + "name": "stdout", + "output_type": "stream", + "text": [ + "N_contact_pairs = 658\n", + "N_noncontact_cell_pairs = 658\n" + ] + }, + { + "name": "stderr", + "output_type": "stream", + "text": [ + ":89: RuntimeWarning: divide by zero encountered in divide\n", + ":89: RuntimeWarning: invalid value encountered in divide\n" + ] + }, + { + "name": "stdout", + "output_type": "stream", + "text": [ + "N_contact_pairs = 658\n", + "N_noncontact_cell_pairs = 658\n", + "Microglia NN Oligo NN\n" + ] + }, + { + "name": "stderr", + "output_type": "stream", + "text": [ + ":89: RuntimeWarning: divide by zero encountered in divide\n", + ":89: RuntimeWarning: invalid value encountered in divide\n" + ] + }, + { + "name": "stdout", + "output_type": "stream", + "text": [ + "N_contact_pairs = 17341\n", + "N_noncontact_cell_pairs = 17341\n" + ] + }, + { + "name": "stderr", + "output_type": "stream", + "text": [ + ":89: RuntimeWarning: divide by zero encountered in divide\n", + ":89: RuntimeWarning: invalid value encountered in divide\n" + ] + }, + { + "name": "stdout", + "output_type": "stream", + "text": [ + "N_contact_pairs = 17341\n", + "N_noncontact_cell_pairs = 17341\n" + ] + }, + { + "name": "stderr", + "output_type": "stream", + "text": [ + ":89: RuntimeWarning: divide by zero encountered in divide\n", + ":89: RuntimeWarning: invalid value encountered in divide\n" + ] + }, + { + "name": "stdout", + "output_type": "stream", + "text": [ + "L6 IT CTX Glut Oligo NN\n", + "N_contact_pairs = 25654\n", + "N_noncontact_cell_pairs = 25654\n" + ] + }, + { + "name": "stderr", + "output_type": "stream", + "text": [ + ":89: RuntimeWarning: divide by zero encountered in divide\n", + ":89: RuntimeWarning: invalid value encountered in divide\n" + ] + }, + { + "name": "stdout", + "output_type": "stream", + "text": [ + "N_contact_pairs = 25654\n", + "N_noncontact_cell_pairs = 25654\n" + ] + }, + { + "name": "stderr", + "output_type": "stream", + "text": [ + ":89: RuntimeWarning: divide by zero encountered in divide\n", + ":89: RuntimeWarning: invalid value encountered in divide\n" + ] + }, + { + "name": "stdout", + "output_type": "stream", + "text": [ + "Oligo NN Peri NN\n", + "N_contact_pairs = 6671\n", + "N_noncontact_cell_pairs = 6671\n" + ] + }, + { + "name": "stderr", + "output_type": "stream", + "text": [ + ":89: RuntimeWarning: divide by zero encountered in divide\n", + ":89: RuntimeWarning: invalid value encountered in divide\n" + ] + }, + { + "name": "stdout", + "output_type": "stream", + "text": [ + "N_contact_pairs = 6671\n", + "N_noncontact_cell_pairs = 6671\n" + ] + }, + { + "name": "stderr", + "output_type": "stream", + "text": [ + ":89: RuntimeWarning: divide by zero encountered in divide\n", + ":89: RuntimeWarning: invalid value encountered in divide\n", + ":89: RuntimeWarning: divide by zero encountered in divide\n", + ":89: RuntimeWarning: invalid value encountered in divide\n" + ] + }, + { + "name": "stdout", + "output_type": "stream", + "text": [ + "OEC NN SMC NN\n", + "N_contact_pairs = 66\n", + "N_noncontact_cell_pairs = 66\n", + "N_contact_pairs = 66\n", + "N_noncontact_cell_pairs = 66\n", + "Endo NN Lamp5 Gaba\n" + ] + }, + { + "name": "stderr", + "output_type": "stream", + "text": [ + ":89: RuntimeWarning: divide by zero encountered in divide\n", + ":89: RuntimeWarning: invalid value encountered in divide\n" + ] + }, + { + "name": "stdout", + "output_type": "stream", + "text": [ + "N_contact_pairs = 10652\n", + "N_noncontact_cell_pairs = 10652\n" + ] + }, + { + "name": "stderr", + "output_type": "stream", + "text": [ + ":89: RuntimeWarning: divide by zero encountered in divide\n", + ":89: RuntimeWarning: invalid value encountered in divide\n" + ] + }, + { + "name": "stdout", + "output_type": "stream", + "text": [ + "N_contact_pairs = 10652\n", + "N_noncontact_cell_pairs = 10652\n" + ] + }, + { + "name": "stderr", + "output_type": "stream", + "text": [ + ":89: RuntimeWarning: divide by zero encountered in divide\n", + ":89: RuntimeWarning: invalid value encountered in divide\n" + ] + }, + { + "name": "stdout", + "output_type": "stream", + "text": [ + "Microglia NN OPC NN\n", + "N_contact_pairs = 9159\n", + "N_noncontact_cell_pairs = 9159\n" + ] + }, + { + "name": "stderr", + "output_type": "stream", + "text": [ + ":89: RuntimeWarning: divide by zero encountered in divide\n", + ":89: RuntimeWarning: invalid value encountered in divide\n" + ] + }, + { + "name": "stdout", + "output_type": "stream", + "text": [ + "N_contact_pairs = 9159\n", + "N_noncontact_cell_pairs = 9159\n" + ] + }, + { + "name": "stderr", + "output_type": "stream", + "text": [ + ":89: RuntimeWarning: divide by zero encountered in divide\n", + ":89: RuntimeWarning: invalid value encountered in divide\n" + ] + }, + { + "name": "stdout", + "output_type": "stream", + "text": [ + "Endo NN OEC NN\n", + "N_contact_pairs = 262\n", + "N_noncontact_cell_pairs = 262\n" + ] + }, + { + "name": "stderr", + "output_type": "stream", + "text": [ + ":89: RuntimeWarning: divide by zero encountered in divide\n", + ":89: RuntimeWarning: invalid value encountered in divide\n" + ] + }, + { + "name": "stdout", + "output_type": "stream", + "text": [ + "N_contact_pairs = 262\n", + "N_noncontact_cell_pairs = 262\n" + ] + }, + { + "name": "stderr", + "output_type": "stream", + "text": [ + ":89: RuntimeWarning: divide by zero encountered in divide\n", + ":89: RuntimeWarning: invalid value encountered in divide\n" + ] + }, + { + "name": "stdout", + "output_type": "stream", + "text": [ + "Microglia NN VLMC NN\n", + "N_contact_pairs = 2669\n", + "N_noncontact_cell_pairs = 2669\n" + ] + }, + { + "name": "stderr", + "output_type": "stream", + "text": [ + ":89: RuntimeWarning: divide by zero encountered in divide\n", + ":89: RuntimeWarning: invalid value encountered in divide\n" + ] + }, + { + "name": "stdout", + "output_type": "stream", + "text": [ + "N_contact_pairs = 2669\n", + "N_noncontact_cell_pairs = 2669\n" + ] + }, + { + "name": "stderr", + "output_type": "stream", + "text": [ + ":89: RuntimeWarning: divide by zero encountered in divide\n", + ":89: RuntimeWarning: invalid value encountered in divide\n" + ] + }, + { + "name": "stdout", + "output_type": "stream", + "text": [ + "BAM NN Microglia NN\n", + "N_contact_pairs = 697\n", + "N_noncontact_cell_pairs = 697\n" + ] + }, + { + "name": "stderr", + "output_type": "stream", + "text": [ + ":89: RuntimeWarning: divide by zero encountered in divide\n", + ":89: RuntimeWarning: invalid value encountered in divide\n" + ] + }, + { + "name": "stdout", + "output_type": "stream", + "text": [ + "N_contact_pairs = 697\n", + "N_noncontact_cell_pairs = 697\n", + "Lamp5 Gaba Oligo NN\n" + ] + }, + { + "name": "stderr", + "output_type": "stream", + "text": [ + ":89: RuntimeWarning: divide by zero encountered in divide\n", + ":89: RuntimeWarning: invalid value encountered in divide\n" + ] + }, + { + "name": "stdout", + "output_type": "stream", + "text": [ + "N_contact_pairs = 2535\n", + "N_noncontact_cell_pairs = 2535\n" + ] + }, + { + "name": "stderr", + "output_type": "stream", + "text": [ + ":89: RuntimeWarning: divide by zero encountered in divide\n", + ":89: RuntimeWarning: invalid value encountered in divide\n" + ] + }, + { + "name": "stdout", + "output_type": "stream", + "text": [ + "N_contact_pairs = 2535\n", + "N_noncontact_cell_pairs = 2535\n" + ] + }, + { + "name": "stderr", + "output_type": "stream", + "text": [ + ":89: RuntimeWarning: divide by zero encountered in divide\n", + ":89: RuntimeWarning: invalid value encountered in divide\n" + ] + }, + { + "name": "stdout", + "output_type": "stream", + "text": [ + "L5 NP CTX Glut Sst Gaba\n", + "N_contact_pairs = 5371\n", + "N_noncontact_cell_pairs = 5371\n" + ] + }, + { + "name": "stderr", + "output_type": "stream", + "text": [ + ":89: RuntimeWarning: divide by zero encountered in divide\n", + ":89: RuntimeWarning: invalid value encountered in divide\n" + ] + }, + { + "name": "stdout", + "output_type": "stream", + "text": [ + "N_contact_pairs = 5371\n", + "N_noncontact_cell_pairs = 5371\n" + ] + }, + { + "name": "stderr", + "output_type": "stream", + "text": [ + ":89: RuntimeWarning: divide by zero encountered in divide\n", + ":89: RuntimeWarning: invalid value encountered in divide\n" + ] + }, + { + "name": "stdout", + "output_type": "stream", + "text": [ + "L4 RSP-ACA Glut L4/5 IT CTX Glut\n", + "N_contact_pairs = 211\n", + "N_noncontact_cell_pairs = 211\n" + ] + }, + { + "name": "stderr", + "output_type": "stream", + "text": [ + ":89: RuntimeWarning: divide by zero encountered in divide\n", + ":89: RuntimeWarning: invalid value encountered in divide\n" + ] + }, + { + "name": "stdout", + "output_type": "stream", + "text": [ + "N_contact_pairs = 211\n", + "N_noncontact_cell_pairs = 211\n" + ] + }, + { + "name": "stderr", + "output_type": "stream", + "text": [ + ":89: RuntimeWarning: divide by zero encountered in divide\n", + ":89: RuntimeWarning: invalid value encountered in divide\n" + ] + }, + { + "name": "stdout", + "output_type": "stream", + "text": [ + "Lymphoid NN Microglia NN\n", + "N_contact_pairs = 233\n", + "N_noncontact_cell_pairs = 233\n" + ] + }, + { + "name": "stderr", + "output_type": "stream", + "text": [ + ":89: RuntimeWarning: divide by zero encountered in divide\n", + ":89: RuntimeWarning: invalid value encountered in divide\n" + ] + }, + { + "name": "stdout", + "output_type": "stream", + "text": [ + "N_contact_pairs = 233\n", + "N_noncontact_cell_pairs = 233\n", + "Astro-TE NN DC NN\n" + ] + }, + { + "name": "stderr", + "output_type": "stream", + "text": [ + ":89: RuntimeWarning: divide by zero encountered in divide\n", + ":89: RuntimeWarning: invalid value encountered in divide\n" + ] + }, + { + "name": "stdout", + "output_type": "stream", + "text": [ + "N_contact_pairs = 124\n", + "N_noncontact_cell_pairs = 124\n" + ] + }, + { + "name": "stderr", + "output_type": "stream", + "text": [ + ":89: RuntimeWarning: divide by zero encountered in divide\n", + ":89: RuntimeWarning: invalid value encountered in divide\n" + ] + }, + { + "name": "stdout", + "output_type": "stream", + "text": [ + "N_contact_pairs = 124\n", + "N_noncontact_cell_pairs = 124\n" + ] + }, + { + "name": "stderr", + "output_type": "stream", + "text": [ + ":89: RuntimeWarning: divide by zero encountered in divide\n", + ":89: RuntimeWarning: invalid value encountered in divide\n" + ] + }, + { + "name": "stdout", + "output_type": "stream", + "text": [ + "L5 IT CTX Glut L5 NP CTX Glut\n", + "N_contact_pairs = 7901\n", + "N_noncontact_cell_pairs = 7901\n" + ] + }, + { + "name": "stderr", + "output_type": "stream", + "text": [ + ":89: RuntimeWarning: divide by zero encountered in divide\n", + ":89: RuntimeWarning: invalid value encountered in divide\n" + ] + }, + { + "name": "stdout", + "output_type": "stream", + "text": [ + "N_contact_pairs = 7901\n", + "N_noncontact_cell_pairs = 7901\n" + ] + }, + { + "name": "stderr", + "output_type": "stream", + "text": [ + ":89: RuntimeWarning: divide by zero encountered in divide\n", + ":89: RuntimeWarning: invalid value encountered in divide\n" + ] + }, + { + "name": "stdout", + "output_type": "stream", + "text": [ + "Lamp5 Gaba Peri NN\n", + "N_contact_pairs = 1314\n", + "N_noncontact_cell_pairs = 1314\n" + ] + }, + { + "name": "stderr", + "output_type": "stream", + "text": [ + ":89: RuntimeWarning: divide by zero encountered in divide\n", + ":89: RuntimeWarning: invalid value encountered in divide\n" + ] + }, + { + "name": "stdout", + "output_type": "stream", + "text": [ + "N_contact_pairs = 1314\n", + "N_noncontact_cell_pairs = 1314\n", + "L6 CT CTX Glut OPC NN\n" + ] + }, + { + "name": "stderr", + "output_type": "stream", + "text": [ + ":89: RuntimeWarning: divide by zero encountered in divide\n", + ":89: RuntimeWarning: invalid value encountered in divide\n" + ] + }, + { + "name": "stdout", + "output_type": "stream", + "text": [ + "N_contact_pairs = 19483\n", + "N_noncontact_cell_pairs = 19483\n" + ] + }, + { + "name": "stderr", + "output_type": "stream", + "text": [ + ":89: RuntimeWarning: divide by zero encountered in divide\n", + ":89: RuntimeWarning: invalid value encountered in divide\n" + ] + }, + { + "name": "stdout", + "output_type": "stream", + "text": [ + "N_contact_pairs = 19483\n", + "N_noncontact_cell_pairs = 19483\n" + ] + }, + { + "name": "stderr", + "output_type": "stream", + "text": [ + ":89: RuntimeWarning: divide by zero encountered in divide\n", + ":89: RuntimeWarning: invalid value encountered in divide\n" + ] + }, + { + "name": "stdout", + "output_type": "stream", + "text": [ + "L4 RSP-ACA Glut Microglia NN\n", + "N_contact_pairs = 821\n", + "N_noncontact_cell_pairs = 821\n" + ] + }, + { + "name": "stderr", + "output_type": "stream", + "text": [ + ":89: RuntimeWarning: divide by zero encountered in divide\n", + ":89: RuntimeWarning: invalid value encountered in divide\n" + ] + }, + { + "name": "stdout", + "output_type": "stream", + "text": [ + "N_contact_pairs = 821\n", + "N_noncontact_cell_pairs = 821\n", + "L6 CT CTX Glut Microglia NN\n" + ] + }, + { + "name": "stderr", + "output_type": "stream", + "text": [ + ":89: RuntimeWarning: divide by zero encountered in divide\n", + ":89: RuntimeWarning: invalid value encountered in divide\n" + ] + }, + { + "name": "stdout", + "output_type": "stream", + "text": [ + "N_contact_pairs = 30091\n", + "N_noncontact_cell_pairs = 30091\n" + ] + }, + { + "name": "stderr", + "output_type": "stream", + "text": [ + ":89: RuntimeWarning: divide by zero encountered in divide\n", + ":89: RuntimeWarning: invalid value encountered in divide\n" + ] + }, + { + "name": "stdout", + "output_type": "stream", + "text": [ + "N_contact_pairs = 30091\n", + "N_noncontact_cell_pairs = 30091\n" + ] + }, + { + "name": "stderr", + "output_type": "stream", + "text": [ + ":89: RuntimeWarning: divide by zero encountered in divide\n", + ":89: RuntimeWarning: invalid value encountered in divide\n" + ] + }, + { + "name": "stdout", + "output_type": "stream", + "text": [ + "Sncg Gaba Vip Gaba\n", + "N_contact_pairs = 433\n", + "N_noncontact_cell_pairs = 433\n" + ] + }, + { + "name": "stderr", + "output_type": "stream", + "text": [ + ":89: RuntimeWarning: divide by zero encountered in divide\n", + ":89: RuntimeWarning: invalid value encountered in divide\n" + ] + }, + { + "name": "stdout", + "output_type": "stream", + "text": [ + "N_contact_pairs = 433\n", + "N_noncontact_cell_pairs = 433\n", + "Oligo NN Sncg Gaba\n" + ] + }, + { + "name": "stderr", + "output_type": "stream", + "text": [ + ":89: RuntimeWarning: divide by zero encountered in divide\n", + ":89: RuntimeWarning: invalid value encountered in divide\n" + ] + }, + { + "name": "stdout", + "output_type": "stream", + "text": [ + "N_contact_pairs = 930\n", + "N_noncontact_cell_pairs = 930\n" + ] + }, + { + "name": "stderr", + "output_type": "stream", + "text": [ + ":89: RuntimeWarning: divide by zero encountered in divide\n", + ":89: RuntimeWarning: invalid value encountered in divide\n" + ] + }, + { + "name": "stdout", + "output_type": "stream", + "text": [ + "N_contact_pairs = 930\n", + "N_noncontact_cell_pairs = 930\n" + ] + }, + { + "name": "stderr", + "output_type": "stream", + "text": [ + ":89: RuntimeWarning: divide by zero encountered in divide\n", + ":89: RuntimeWarning: invalid value encountered in divide\n" + ] + }, + { + "name": "stdout", + "output_type": "stream", + "text": [ + "Medulla\n" + ] + }, + { + "name": "stderr", + "output_type": "stream", + "text": [ + ":25: ImplicitModificationWarning: Trying to modify attribute `.obs` of view, initializing view as actual.\n", + ":28: ImplicitModificationWarning: Trying to modify attribute `.obs` of view, initializing view as actual.\n" + ] + }, + { + "name": "stdout", + "output_type": "stream", + "text": [ + "SMC NN SMC NN\n", + "N_contact_pairs = 1611\n", + "N_noncontact_cell_pairs = 1611\n", + "VLMC NN VLMC NN\n", + "N_contact_pairs = 2889\n", + "N_noncontact_cell_pairs = 2889\n", + "Ependymal NN Ependymal NN\n", + "N_contact_pairs = 1486\n", + "N_noncontact_cell_pairs = 1326\n" + ] + }, + { + "name": "stderr", + "output_type": "stream", + "text": [ + ":89: RuntimeWarning: divide by zero encountered in divide\n", + ":89: RuntimeWarning: invalid value encountered in divide\n", + ":89: RuntimeWarning: divide by zero encountered in divide\n", + ":89: RuntimeWarning: invalid value encountered in divide\n", + ":89: RuntimeWarning: divide by zero encountered in divide\n", + ":89: RuntimeWarning: invalid value encountered in divide\n" + ] + }, + { + "name": "stdout", + "output_type": "stream", + "text": [ + "SMC NN VLMC NN\n", + "N_contact_pairs = 1817\n", + "N_noncontact_cell_pairs = 1817\n", + "N_contact_pairs = 1817\n", + "N_noncontact_cell_pairs = 1817\n", + "Endo NN SMC NN\n" + ] + }, + { + "name": "stderr", + "output_type": "stream", + "text": [ + ":89: RuntimeWarning: divide by zero encountered in divide\n", + ":89: RuntimeWarning: invalid value encountered in divide\n", + ":89: RuntimeWarning: divide by zero encountered in divide\n", + ":89: RuntimeWarning: invalid value encountered in divide\n" + ] + }, + { + "name": "stdout", + "output_type": "stream", + "text": [ + "N_contact_pairs = 3090\n", + "N_noncontact_cell_pairs = 3090\n" + ] + }, + { + "name": "stderr", + "output_type": "stream", + "text": [ + ":89: RuntimeWarning: divide by zero encountered in divide\n", + ":89: RuntimeWarning: invalid value encountered in divide\n" + ] + }, + { + "name": "stdout", + "output_type": "stream", + "text": [ + "N_contact_pairs = 3090\n", + "N_noncontact_cell_pairs = 3090\n", + "Endo NN VLMC NN\n" + ] + }, + { + "name": "stderr", + "output_type": "stream", + "text": [ + ":89: RuntimeWarning: divide by zero encountered in divide\n", + ":89: RuntimeWarning: invalid value encountered in divide\n" + ] + }, + { + "name": "stdout", + "output_type": "stream", + "text": [ + "N_contact_pairs = 3798\n", + "N_noncontact_cell_pairs = 3798\n" + ] + }, + { + "name": "stderr", + "output_type": "stream", + "text": [ + ":89: RuntimeWarning: divide by zero encountered in divide\n", + ":89: RuntimeWarning: invalid value encountered in divide\n" + ] + }, + { + "name": "stdout", + "output_type": "stream", + "text": [ + "N_contact_pairs = 3798\n", + "N_noncontact_cell_pairs = 3798\n", + "BAM NN VLMC NN\n" + ] + }, + { + "name": "stderr", + "output_type": "stream", + "text": [ + ":89: RuntimeWarning: divide by zero encountered in divide\n", + ":89: RuntimeWarning: invalid value encountered in divide\n", + ":89: RuntimeWarning: divide by zero encountered in divide\n", + ":89: RuntimeWarning: invalid value encountered in divide\n", + ":89: RuntimeWarning: divide by zero encountered in divide\n", + ":89: RuntimeWarning: invalid value encountered in divide\n", + ":89: RuntimeWarning: divide by zero encountered in divide\n", + ":89: RuntimeWarning: invalid value encountered in divide\n" + ] + }, + { + "name": "stdout", + "output_type": "stream", + "text": [ + "N_contact_pairs = 823\n", + "N_noncontact_cell_pairs = 823\n", + "N_contact_pairs = 823\n", + "N_noncontact_cell_pairs = 823\n", + "CHOR NN CHOR NN\n", + "N_contact_pairs = 3853\n", + "N_noncontact_cell_pairs = 300\n", + "ABC NN VLMC NN\n", + "N_contact_pairs = 724\n", + "N_noncontact_cell_pairs = 724\n" + ] + }, + { + "name": "stderr", + "output_type": "stream", + "text": [ + ":89: RuntimeWarning: divide by zero encountered in divide\n", + ":89: RuntimeWarning: invalid value encountered in divide\n", + ":89: RuntimeWarning: divide by zero encountered in divide\n", + ":89: RuntimeWarning: invalid value encountered in divide\n" + ] + }, + { + "name": "stdout", + "output_type": "stream", + "text": [ + "N_contact_pairs = 724\n", + "N_noncontact_cell_pairs = 724\n", + "Oligo NN Oligo NN\n", + "N_contact_pairs = 84959\n", + "N_noncontact_cell_pairs = 84959\n" + ] + }, + { + "name": "stderr", + "output_type": "stream", + "text": [ + ":89: RuntimeWarning: divide by zero encountered in divide\n", + ":89: RuntimeWarning: invalid value encountered in divide\n" + ] + }, + { + "name": "stdout", + "output_type": "stream", + "text": [ + "Endo NN Peri NN\n", + "N_contact_pairs = 4633\n", + "N_noncontact_cell_pairs = 4633\n" + ] + }, + { + "name": "stderr", + "output_type": "stream", + "text": [ + ":89: RuntimeWarning: divide by zero encountered in divide\n", + ":89: RuntimeWarning: invalid value encountered in divide\n" + ] + }, + { + "name": "stdout", + "output_type": "stream", + "text": [ + "N_contact_pairs = 4633\n", + "N_noncontact_cell_pairs = 4633\n" + ] + }, + { + "name": "stderr", + "output_type": "stream", + "text": [ + ":89: RuntimeWarning: divide by zero encountered in divide\n", + ":89: RuntimeWarning: invalid value encountered in divide\n" + ] + }, + { + "name": "stdout", + "output_type": "stream", + "text": [ + "Endo NN Endo NN\n", + "N_contact_pairs = 14198\n", + "N_noncontact_cell_pairs = 14198\n" + ] + }, + { + "name": "stderr", + "output_type": "stream", + "text": [ + ":89: RuntimeWarning: divide by zero encountered in divide\n", + ":89: RuntimeWarning: invalid value encountered in divide\n", + ":89: RuntimeWarning: divide by zero encountered in divide\n", + ":89: RuntimeWarning: invalid value encountered in divide\n" + ] + }, + { + "name": "stdout", + "output_type": "stream", + "text": [ + "ABC NN ABC NN\n", + "N_contact_pairs = 238\n", + "N_noncontact_cell_pairs = 238\n", + "BAM NN Endo NN\n", + "N_contact_pairs = 1021\n", + "N_noncontact_cell_pairs = 1021\n" + ] + }, + { + "name": "stderr", + "output_type": "stream", + "text": [ + ":89: RuntimeWarning: divide by zero encountered in divide\n", + ":89: RuntimeWarning: invalid value encountered in divide\n" + ] + }, + { + "name": "stdout", + "output_type": "stream", + "text": [ + "N_contact_pairs = 1021\n", + "N_noncontact_cell_pairs = 1021\n", + "PAS-MV Ebf2 Gly-Gaba PAS-MV Ebf2 Gly-Gaba\n", + "N_contact_pairs = 1290\n", + "N_noncontact_cell_pairs = 1290\n", + "BAM NN SMC NN\n", + "N_contact_pairs = 261\n", + "N_noncontact_cell_pairs = 261\n" + ] + }, + { + "name": "stderr", + "output_type": "stream", + "text": [ + ":89: RuntimeWarning: divide by zero encountered in divide\n", + ":89: RuntimeWarning: invalid value encountered in divide\n", + ":89: RuntimeWarning: divide by zero encountered in divide\n", + ":89: RuntimeWarning: invalid value encountered in divide\n", + ":89: RuntimeWarning: divide by zero encountered in divide\n", + ":89: RuntimeWarning: invalid value encountered in divide\n", + ":89: RuntimeWarning: divide by zero encountered in divide\n", + ":89: RuntimeWarning: invalid value encountered in divide\n" + ] + }, + { + "name": "stdout", + "output_type": "stream", + "text": [ + "N_contact_pairs = 261\n", + "N_noncontact_cell_pairs = 261\n", + "Microglia NN Oligo NN\n", + "N_contact_pairs = 13376\n", + "N_noncontact_cell_pairs = 13376\n" + ] + }, + { + "name": "stderr", + "output_type": "stream", + "text": [ + ":89: RuntimeWarning: divide by zero encountered in divide\n", + ":89: RuntimeWarning: invalid value encountered in divide\n" + ] + }, + { + "name": "stdout", + "output_type": "stream", + "text": [ + "N_contact_pairs = 13376\n", + "N_noncontact_cell_pairs = 13376\n" + ] + }, + { + "name": "stderr", + "output_type": "stream", + "text": [ + ":89: RuntimeWarning: divide by zero encountered in divide\n", + ":89: RuntimeWarning: invalid value encountered in divide\n", + ":89: RuntimeWarning: divide by zero encountered in divide\n", + ":89: RuntimeWarning: invalid value encountered in divide\n" + ] + }, + { + "name": "stdout", + "output_type": "stream", + "text": [ + "DCO UBC Glut DCO UBC Glut\n", + "N_contact_pairs = 1278\n", + "N_noncontact_cell_pairs = 1278\n", + "Astro-NT NN Oligo NN\n", + "N_contact_pairs = 58292\n", + "N_noncontact_cell_pairs = 58292\n" + ] + }, + { + "name": "stderr", + "output_type": "stream", + "text": [ + ":89: RuntimeWarning: divide by zero encountered in divide\n", + ":89: RuntimeWarning: invalid value encountered in divide\n" + ] + }, + { + "name": "stdout", + "output_type": "stream", + "text": [ + "N_contact_pairs = 58292\n", + "N_noncontact_cell_pairs = 58292\n" + ] + }, + { + "name": "stderr", + "output_type": "stream", + "text": [ + ":89: RuntimeWarning: divide by zero encountered in divide\n", + ":89: RuntimeWarning: invalid value encountered in divide\n" + ] + }, + { + "name": "stdout", + "output_type": "stream", + "text": [ + "BAM NN BAM NN\n", + "N_contact_pairs = 81\n", + "N_noncontact_cell_pairs = 81\n", + "OPC NN OPC NN\n", + "N_contact_pairs = 753\n", + "N_noncontact_cell_pairs = 753\n", + "CHOR NN VLMC NN\n", + "N_contact_pairs = 927\n", + "N_noncontact_cell_pairs = 927\n" + ] + }, + { + "name": "stderr", + "output_type": "stream", + "text": [ + ":89: RuntimeWarning: divide by zero encountered in divide\n", + ":89: RuntimeWarning: invalid value encountered in divide\n", + ":89: RuntimeWarning: divide by zero encountered in divide\n", + ":89: RuntimeWarning: invalid value encountered in divide\n", + ":89: RuntimeWarning: divide by zero encountered in divide\n", + ":89: RuntimeWarning: invalid value encountered in divide\n" + ] + }, + { + "name": "stdout", + "output_type": "stream", + "text": [ + "N_contact_pairs = 927\n", + "N_noncontact_cell_pairs = 927\n", + "NTS Phox2b Glut NTS Phox2b Glut\n", + "N_contact_pairs = 1695\n", + "N_noncontact_cell_pairs = 1695\n", + "Peri NN VLMC NN\n", + "N_contact_pairs = 385\n", + "N_noncontact_cell_pairs = 385\n" + ] + }, + { + "name": "stderr", + "output_type": "stream", + "text": [ + ":89: RuntimeWarning: divide by zero encountered in divide\n", + ":89: RuntimeWarning: invalid value encountered in divide\n", + ":89: RuntimeWarning: divide by zero encountered in divide\n", + ":89: RuntimeWarning: invalid value encountered in divide\n", + ":89: RuntimeWarning: divide by zero encountered in divide\n", + ":89: RuntimeWarning: invalid value encountered in divide\n" + ] + }, + { + "name": "stdout", + "output_type": "stream", + "text": [ + "N_contact_pairs = 385\n", + "N_noncontact_cell_pairs = 385\n", + "RPA Pax6 Hoxb5 Gly-Gaba RPA Pax6 Hoxb5 Gly-Gaba\n", + "N_contact_pairs = 139\n", + "N_noncontact_cell_pairs = 139\n", + "NTS Dbh Glut NTS Dbh Glut\n", + "N_contact_pairs = 246\n", + "N_noncontact_cell_pairs = 246\n", + "Astro-NT NN Astro-NT NN\n" + ] + }, + { + "name": "stderr", + "output_type": "stream", + "text": [ + ":89: RuntimeWarning: divide by zero encountered in divide\n", + ":89: RuntimeWarning: invalid value encountered in divide\n", + ":89: RuntimeWarning: divide by zero encountered in divide\n", + ":89: RuntimeWarning: invalid value encountered in divide\n", + ":89: RuntimeWarning: divide by zero encountered in divide\n", + ":89: RuntimeWarning: invalid value encountered in divide\n" + ] + }, + { + "name": "stdout", + "output_type": "stream", + "text": [ + "N_contact_pairs = 15130\n", + "N_noncontact_cell_pairs = 15130\n" + ] + }, + { + "name": "stderr", + "output_type": "stream", + "text": [ + ":89: RuntimeWarning: divide by zero encountered in divide\n", + ":89: RuntimeWarning: invalid value encountered in divide\n" + ] + }, + { + "name": "stdout", + "output_type": "stream", + "text": [ + "Astro-NT NN Endo NN\n", + "N_contact_pairs = 24927\n", + "N_noncontact_cell_pairs = 24927\n" + ] + }, + { + "name": "stderr", + "output_type": "stream", + "text": [ + ":89: RuntimeWarning: divide by zero encountered in divide\n", + ":89: RuntimeWarning: invalid value encountered in divide\n" + ] + }, + { + "name": "stdout", + "output_type": "stream", + "text": [ + "N_contact_pairs = 24927\n", + "N_noncontact_cell_pairs = 24927\n" + ] + }, + { + "name": "stderr", + "output_type": "stream", + "text": [ + ":89: RuntimeWarning: divide by zero encountered in divide\n", + ":89: RuntimeWarning: invalid value encountered in divide\n" + ] + }, + { + "name": "stdout", + "output_type": "stream", + "text": [ + "IO Fgl2 Glut IO Fgl2 Glut\n", + "N_contact_pairs = 1335\n", + "N_noncontact_cell_pairs = 1335\n", + "PARN-MDRNd-NTS Gbx2 Gly-Gaba PARN-MDRNd-NTS Gbx2 Gly-Gaba\n", + "N_contact_pairs = 750\n", + "N_noncontact_cell_pairs = 750\n", + "OPC NN Oligo NN\n" + ] + }, + { + "name": "stderr", + "output_type": "stream", + "text": [ + ":89: RuntimeWarning: divide by zero encountered in divide\n", + ":89: RuntimeWarning: invalid value encountered in divide\n", + ":89: RuntimeWarning: divide by zero encountered in divide\n", + ":89: RuntimeWarning: invalid value encountered in divide\n" + ] + }, + { + "name": "stdout", + "output_type": "stream", + "text": [ + "N_contact_pairs = 12414\n", + "N_noncontact_cell_pairs = 12414\n" + ] + }, + { + "name": "stderr", + "output_type": "stream", + "text": [ + ":89: RuntimeWarning: divide by zero encountered in divide\n", + ":89: RuntimeWarning: invalid value encountered in divide\n" + ] + }, + { + "name": "stdout", + "output_type": "stream", + "text": [ + "N_contact_pairs = 12414\n", + "N_noncontact_cell_pairs = 12414\n" + ] + }, + { + "name": "stderr", + "output_type": "stream", + "text": [ + ":89: RuntimeWarning: divide by zero encountered in divide\n", + ":89: RuntimeWarning: invalid value encountered in divide\n", + ":89: RuntimeWarning: divide by zero encountered in divide\n", + ":89: RuntimeWarning: invalid value encountered in divide\n", + ":89: RuntimeWarning: divide by zero encountered in divide\n", + ":89: RuntimeWarning: invalid value encountered in divide\n", + ":89: RuntimeWarning: divide by zero encountered in divide\n", + ":89: RuntimeWarning: invalid value encountered in divide\n" + ] + }, + { + "name": "stdout", + "output_type": "stream", + "text": [ + "NTS-PARN Neurod2 Gly-Gaba NTS-PARN Neurod2 Gly-Gaba\n", + "N_contact_pairs = 605\n", + "N_noncontact_cell_pairs = 605\n", + "ABC NN BAM NN\n", + "N_contact_pairs = 62\n", + "N_noncontact_cell_pairs = 62\n", + "N_contact_pairs = 62\n", + "N_noncontact_cell_pairs = 62\n", + "DMX VII Tbx20 Chol DMX VII Tbx20 Chol\n", + "N_contact_pairs = 276\n", + "N_noncontact_cell_pairs = 276\n", + "Astroependymal NN Astroependymal NN\n", + "N_contact_pairs = 117\n", + "N_noncontact_cell_pairs = 117\n", + "Endo NN VCO Mafa Meis2 Glut\n" + ] + }, + { + "name": "stderr", + "output_type": "stream", + "text": [ + ":89: RuntimeWarning: divide by zero encountered in divide\n", + ":89: RuntimeWarning: invalid value encountered in divide\n", + ":89: RuntimeWarning: divide by zero encountered in divide\n", + ":89: RuntimeWarning: invalid value encountered in divide\n" + ] + }, + { + "name": "stdout", + "output_type": "stream", + "text": [ + "N_contact_pairs = 1617\n", + "N_noncontact_cell_pairs = 1617\n" + ] + }, + { + "name": "stderr", + "output_type": "stream", + "text": [ + ":89: RuntimeWarning: divide by zero encountered in divide\n", + ":89: RuntimeWarning: invalid value encountered in divide\n" + ] + }, + { + "name": "stdout", + "output_type": "stream", + "text": [ + "N_contact_pairs = 1617\n", + "N_noncontact_cell_pairs = 1617\n", + "Astro-NT NN Microglia NN\n" + ] + }, + { + "name": "stderr", + "output_type": "stream", + "text": [ + ":89: RuntimeWarning: divide by zero encountered in divide\n", + ":89: RuntimeWarning: invalid value encountered in divide\n" + ] + }, + { + "name": "stdout", + "output_type": "stream", + "text": [ + "N_contact_pairs = 4984\n", + "N_noncontact_cell_pairs = 4984\n" + ] + }, + { + "name": "stderr", + "output_type": "stream", + "text": [ + ":89: RuntimeWarning: divide by zero encountered in divide\n", + ":89: RuntimeWarning: invalid value encountered in divide\n" + ] + }, + { + "name": "stdout", + "output_type": "stream", + "text": [ + "N_contact_pairs = 4984\n", + "N_noncontact_cell_pairs = 4984\n" + ] + }, + { + "name": "stderr", + "output_type": "stream", + "text": [ + ":89: RuntimeWarning: divide by zero encountered in divide\n", + ":89: RuntimeWarning: invalid value encountered in divide\n", + ":89: RuntimeWarning: divide by zero encountered in divide\n", + ":89: RuntimeWarning: invalid value encountered in divide\n", + ":89: RuntimeWarning: divide by zero encountered in divide\n", + ":89: RuntimeWarning: invalid value encountered in divide\n", + ":89: RuntimeWarning: divide by zero encountered in divide\n", + ":89: RuntimeWarning: invalid value encountered in divide\n", + ":89: RuntimeWarning: divide by zero encountered in divide\n", + ":89: RuntimeWarning: invalid value encountered in divide\n" + ] + }, + { + "name": "stdout", + "output_type": "stream", + "text": [ + "Lymphoid NN VLMC NN\n", + "N_contact_pairs = 92\n", + "N_noncontact_cell_pairs = 92\n", + "N_contact_pairs = 92\n", + "N_noncontact_cell_pairs = 92\n", + "SPVI-SPVC Tlx3 Ebf3 Glut SPVI-SPVC Tlx3 Ebf3 Glut\n", + "N_contact_pairs = 326\n", + "N_noncontact_cell_pairs = 326\n", + "PRP-NI-PRNc-GRN Otp Glut PRP-NI-PRNc-GRN Otp Glut\n", + "N_contact_pairs = 81\n", + "N_noncontact_cell_pairs = 81\n", + "Astro-NT NN VCO Mafa Meis2 Glut\n", + "N_contact_pairs = 1457\n", + "N_noncontact_cell_pairs = 1457\n" + ] + }, + { + "name": "stderr", + "output_type": "stream", + "text": [ + ":89: RuntimeWarning: divide by zero encountered in divide\n", + ":89: RuntimeWarning: invalid value encountered in divide\n" + ] + }, + { + "name": "stdout", + "output_type": "stream", + "text": [ + "N_contact_pairs = 1457\n", + "N_noncontact_cell_pairs = 1457\n", + "SPVC Ccdc172 Glut SPVC Ccdc172 Glut\n", + "N_contact_pairs = 86\n", + "N_noncontact_cell_pairs = 86\n", + "DCO UBC Glut Endo NN\n" + ] + }, + { + "name": "stderr", + "output_type": "stream", + "text": [ + ":89: RuntimeWarning: divide by zero encountered in divide\n", + ":89: RuntimeWarning: invalid value encountered in divide\n", + ":89: RuntimeWarning: divide by zero encountered in divide\n", + ":89: RuntimeWarning: invalid value encountered in divide\n" + ] + }, + { + "name": "stdout", + "output_type": "stream", + "text": [ + "N_contact_pairs = 769\n", + "N_noncontact_cell_pairs = 769\n" + ] + }, + { + "name": "stderr", + "output_type": "stream", + "text": [ + ":89: RuntimeWarning: divide by zero encountered in divide\n", + ":89: RuntimeWarning: invalid value encountered in divide\n" + ] + }, + { + "name": "stdout", + "output_type": "stream", + "text": [ + "N_contact_pairs = 769\n", + "N_noncontact_cell_pairs = 769\n", + "Peri NN Peri NN\n", + "N_contact_pairs = 282\n", + "N_noncontact_cell_pairs = 282\n", + "SPVC Nmu Glut SPVC Nmu Glut\n", + "N_contact_pairs = 59\n", + "N_noncontact_cell_pairs = 59\n", + "Astro-NT NN DCO UBC Glut\n" + ] + }, + { + "name": "stderr", + "output_type": "stream", + "text": [ + ":89: RuntimeWarning: divide by zero encountered in divide\n", + ":89: RuntimeWarning: invalid value encountered in divide\n", + ":89: RuntimeWarning: divide by zero encountered in divide\n", + ":89: RuntimeWarning: invalid value encountered in divide\n", + ":89: RuntimeWarning: divide by zero encountered in divide\n", + ":89: RuntimeWarning: invalid value encountered in divide\n" + ] + }, + { + "name": "stdout", + "output_type": "stream", + "text": [ + "N_contact_pairs = 810\n", + "N_noncontact_cell_pairs = 810\n" + ] + }, + { + "name": "stderr", + "output_type": "stream", + "text": [ + ":89: RuntimeWarning: divide by zero encountered in divide\n", + ":89: RuntimeWarning: invalid value encountered in divide\n" + ] + }, + { + "name": "stdout", + "output_type": "stream", + "text": [ + "N_contact_pairs = 810\n", + "N_noncontact_cell_pairs = 810\n", + "BAM NN Peri NN\n", + "N_contact_pairs = 102\n", + "N_noncontact_cell_pairs = 102\n" + ] + }, + { + "name": "stderr", + "output_type": "stream", + "text": [ + ":89: RuntimeWarning: divide by zero encountered in divide\n", + ":89: RuntimeWarning: invalid value encountered in divide\n", + ":89: RuntimeWarning: divide by zero encountered in divide\n", + ":89: RuntimeWarning: invalid value encountered in divide\n", + ":89: RuntimeWarning: divide by zero encountered in divide\n", + ":89: RuntimeWarning: invalid value encountered in divide\n", + ":89: RuntimeWarning: divide by zero encountered in divide\n", + ":89: RuntimeWarning: invalid value encountered in divide\n", + ":89: RuntimeWarning: divide by zero encountered in divide\n", + ":89: RuntimeWarning: invalid value encountered in divide\n", + ":89: RuntimeWarning: divide by zero encountered in divide\n", + ":89: RuntimeWarning: invalid value encountered in divide\n" + ] + }, + { + "name": "stdout", + "output_type": "stream", + "text": [ + "N_contact_pairs = 102\n", + "N_noncontact_cell_pairs = 102\n", + "BAM NN CHOR NN\n", + "N_contact_pairs = 153\n", + "N_noncontact_cell_pairs = 153\n", + "N_contact_pairs = 153\n", + "N_noncontact_cell_pairs = 153\n", + "CHOR NN Ependymal NN\n", + "N_contact_pairs = 296\n", + "N_noncontact_cell_pairs = 296\n", + "N_contact_pairs = 296\n", + "N_noncontact_cell_pairs = 296\n", + "Astroependymal NN NTS-PARN Neurod2 Gly-Gaba\n", + "N_contact_pairs = 159\n", + "N_noncontact_cell_pairs = 159\n", + "N_contact_pairs = 159\n", + "N_noncontact_cell_pairs = 159\n", + "Endo NN Lymphoid NN\n" + ] + }, + { + "name": "stderr", + "output_type": "stream", + "text": [ + ":89: RuntimeWarning: divide by zero encountered in divide\n", + ":89: RuntimeWarning: invalid value encountered in divide\n", + ":89: RuntimeWarning: divide by zero encountered in divide\n", + ":89: RuntimeWarning: invalid value encountered in divide\n", + ":89: RuntimeWarning: divide by zero encountered in divide\n", + ":89: RuntimeWarning: invalid value encountered in divide\n" + ] + }, + { + "name": "stdout", + "output_type": "stream", + "text": [ + "N_contact_pairs = 199\n", + "N_noncontact_cell_pairs = 199\n", + "N_contact_pairs = 199\n", + "N_noncontact_cell_pairs = 199\n" + ] + }, + { + "name": "stderr", + "output_type": "stream", + "text": [ + ":89: RuntimeWarning: divide by zero encountered in divide\n", + ":89: RuntimeWarning: invalid value encountered in divide\n", + ":89: RuntimeWarning: divide by zero encountered in divide\n", + ":89: RuntimeWarning: invalid value encountered in divide\n" + ] + }, + { + "name": "stdout", + "output_type": "stream", + "text": [ + "Microglia NN Microglia NN\n", + "N_contact_pairs = 557\n", + "N_noncontact_cell_pairs = 557\n", + "PRP Otp Gly-Gaba PRP Otp Gly-Gaba\n", + "N_contact_pairs = 308\n", + "N_noncontact_cell_pairs = 308\n", + "SPVC Ccdc172 Glut SPVI-SPVC Tlx3 Ebf3 Glut\n", + "N_contact_pairs = 132\n", + "N_noncontact_cell_pairs = 132\n", + "N_contact_pairs = 132\n", + "N_noncontact_cell_pairs = 132\n", + "Endo NN Microglia NN\n" + ] + }, + { + "name": "stderr", + "output_type": "stream", + "text": [ + ":89: RuntimeWarning: divide by zero encountered in divide\n", + ":89: RuntimeWarning: invalid value encountered in divide\n", + ":89: RuntimeWarning: divide by zero encountered in divide\n", + ":89: RuntimeWarning: invalid value encountered in divide\n", + ":89: RuntimeWarning: divide by zero encountered in divide\n", + ":89: RuntimeWarning: invalid value encountered in divide\n", + ":89: RuntimeWarning: divide by zero encountered in divide\n", + ":89: RuntimeWarning: invalid value encountered in divide\n" + ] + }, + { + "name": "stdout", + "output_type": "stream", + "text": [ + "N_contact_pairs = 4482\n", + "N_noncontact_cell_pairs = 4482\n" + ] + }, + { + "name": "stderr", + "output_type": "stream", + "text": [ + ":89: RuntimeWarning: divide by zero encountered in divide\n", + ":89: RuntimeWarning: invalid value encountered in divide\n" + ] + }, + { + "name": "stdout", + "output_type": "stream", + "text": [ + "N_contact_pairs = 4482\n", + "N_noncontact_cell_pairs = 4482\n" + ] + }, + { + "name": "stderr", + "output_type": "stream", + "text": [ + ":89: RuntimeWarning: divide by zero encountered in divide\n", + ":89: RuntimeWarning: invalid value encountered in divide\n", + ":89: RuntimeWarning: divide by zero encountered in divide\n", + ":89: RuntimeWarning: invalid value encountered in divide\n", + ":89: RuntimeWarning: divide by zero encountered in divide\n", + ":89: RuntimeWarning: invalid value encountered in divide\n", + ":89: RuntimeWarning: divide by zero encountered in divide\n", + ":89: RuntimeWarning: invalid value encountered in divide\n", + ":89: RuntimeWarning: divide by zero encountered in divide\n", + ":89: RuntimeWarning: invalid value encountered in divide\n" + ] + }, + { + "name": "stdout", + "output_type": "stream", + "text": [ + "PPY-PGRNl Vip Glyc-Gaba PPY-PGRNl Vip Glyc-Gaba\n", + "N_contact_pairs = 32\n", + "N_noncontact_cell_pairs = 32\n", + "MV-SPIV-PRP Dmbx1 Gly-Gaba MV-SPIV-PRP Dmbx1 Gly-Gaba\n", + "N_contact_pairs = 82\n", + "N_noncontact_cell_pairs = 82\n", + "Ependymal NN Microglia NN\n", + "N_contact_pairs = 86\n", + "N_noncontact_cell_pairs = 86\n", + "N_contact_pairs = 86\n", + "N_noncontact_cell_pairs = 86\n", + "Astro-NT NN Peri NN\n", + "N_contact_pairs = 3336\n", + "N_noncontact_cell_pairs = 3336\n" + ] + }, + { + "name": "stderr", + "output_type": "stream", + "text": [ + ":89: RuntimeWarning: divide by zero encountered in divide\n", + ":89: RuntimeWarning: invalid value encountered in divide\n" + ] + }, + { + "name": "stdout", + "output_type": "stream", + "text": [ + "N_contact_pairs = 3336\n", + "N_noncontact_cell_pairs = 3336\n", + "Endo NN IO Fgl2 Glut\n" + ] + }, + { + "name": "stderr", + "output_type": "stream", + "text": [ + ":89: RuntimeWarning: divide by zero encountered in divide\n", + ":89: RuntimeWarning: invalid value encountered in divide\n" + ] + }, + { + "name": "stdout", + "output_type": "stream", + "text": [ + "N_contact_pairs = 1559\n", + "N_noncontact_cell_pairs = 1559\n", + "N_contact_pairs = 1559\n", + "N_noncontact_cell_pairs = 1559\n" + ] + }, + { + "name": "stderr", + "output_type": "stream", + "text": [ + ":89: RuntimeWarning: divide by zero encountered in divide\n", + ":89: RuntimeWarning: invalid value encountered in divide\n", + ":89: RuntimeWarning: divide by zero encountered in divide\n", + ":89: RuntimeWarning: invalid value encountered in divide\n" + ] + }, + { + "name": "stdout", + "output_type": "stream", + "text": [ + "VCO Mafa Meis2 Glut VCO Mafa Meis2 Glut\n", + "N_contact_pairs = 802\n", + "N_noncontact_cell_pairs = 802\n", + "HB Calcb Chol HB Calcb Chol\n", + "N_contact_pairs = 191\n", + "N_noncontact_cell_pairs = 191\n", + "NTS-PARN Neurod2 Gly-Gaba PARN-MDRNd-NTS Gbx2 Gly-Gaba\n", + "N_contact_pairs = 677\n", + "N_noncontact_cell_pairs = 677\n", + "N_contact_pairs = 677\n", + "N_noncontact_cell_pairs = 677\n", + "Astro-NT NN OPC NN\n" + ] + }, + { + "name": "stderr", + "output_type": "stream", + "text": [ + ":89: RuntimeWarning: divide by zero encountered in divide\n", + ":89: RuntimeWarning: invalid value encountered in divide\n", + ":89: RuntimeWarning: divide by zero encountered in divide\n", + ":89: RuntimeWarning: invalid value encountered in divide\n", + ":89: RuntimeWarning: divide by zero encountered in divide\n", + ":89: RuntimeWarning: invalid value encountered in divide\n", + ":89: RuntimeWarning: divide by zero encountered in divide\n", + ":89: RuntimeWarning: invalid value encountered in divide\n" + ] + }, + { + "name": "stdout", + "output_type": "stream", + "text": [ + "N_contact_pairs = 4878\n", + "N_noncontact_cell_pairs = 4878\n" + ] + }, + { + "name": "stderr", + "output_type": "stream", + "text": [ + ":89: RuntimeWarning: divide by zero encountered in divide\n", + ":89: RuntimeWarning: invalid value encountered in divide\n" + ] + }, + { + "name": "stdout", + "output_type": "stream", + "text": [ + "N_contact_pairs = 4878\n", + "N_noncontact_cell_pairs = 4878\n" + ] + }, + { + "name": "stderr", + "output_type": "stream", + "text": [ + ":89: RuntimeWarning: divide by zero encountered in divide\n", + ":89: RuntimeWarning: invalid value encountered in divide\n", + ":89: RuntimeWarning: divide by zero encountered in divide\n", + ":89: RuntimeWarning: invalid value encountered in divide\n", + ":89: RuntimeWarning: divide by zero encountered in divide\n", + ":89: RuntimeWarning: invalid value encountered in divide\n", + ":89: RuntimeWarning: divide by zero encountered in divide\n", + ":89: RuntimeWarning: invalid value encountered in divide\n" + ] + }, + { + "name": "stdout", + "output_type": "stream", + "text": [ + "PGRN-PARN-MDRN Hoxb5 Glut PGRN-PARN-MDRN Hoxb5 Glut\n", + "N_contact_pairs = 343\n", + "N_noncontact_cell_pairs = 343\n", + "Ependymal NN VLMC NN\n", + "N_contact_pairs = 64\n", + "N_noncontact_cell_pairs = 64\n", + "N_contact_pairs = 64\n", + "N_noncontact_cell_pairs = 64\n", + "DCO UBC Glut Oligo NN\n", + "N_contact_pairs = 1376\n", + "N_noncontact_cell_pairs = 1376\n" + ] + }, + { + "name": "stderr", + "output_type": "stream", + "text": [ + ":89: RuntimeWarning: divide by zero encountered in divide\n", + ":89: RuntimeWarning: invalid value encountered in divide\n" + ] + }, + { + "name": "stdout", + "output_type": "stream", + "text": [ + "N_contact_pairs = 1376\n", + "N_noncontact_cell_pairs = 1376\n" + ] + }, + { + "name": "stderr", + "output_type": "stream", + "text": [ + ":89: RuntimeWarning: divide by zero encountered in divide\n", + ":89: RuntimeWarning: invalid value encountered in divide\n", + ":89: RuntimeWarning: divide by zero encountered in divide\n", + ":89: RuntimeWarning: invalid value encountered in divide\n", + ":89: RuntimeWarning: divide by zero encountered in divide\n", + ":89: RuntimeWarning: invalid value encountered in divide\n" + ] + }, + { + "name": "stdout", + "output_type": "stream", + "text": [ + "PB-NTS Phox2b Ebf3 Lmx1b Glut PB-NTS Phox2b Ebf3 Lmx1b Glut\n", + "N_contact_pairs = 42\n", + "N_noncontact_cell_pairs = 42\n", + "Microglia NN Peri NN\n", + "N_contact_pairs = 644\n", + "N_noncontact_cell_pairs = 644\n", + "N_contact_pairs = 644\n", + "N_noncontact_cell_pairs = 644\n" + ] + }, + { + "name": "stderr", + "output_type": "stream", + "text": [ + ":89: RuntimeWarning: divide by zero encountered in divide\n", + ":89: RuntimeWarning: invalid value encountered in divide\n", + ":89: RuntimeWarning: divide by zero encountered in divide\n", + ":89: RuntimeWarning: invalid value encountered in divide\n", + ":89: RuntimeWarning: divide by zero encountered in divide\n", + ":89: RuntimeWarning: invalid value encountered in divide\n" + ] + }, + { + "name": "stdout", + "output_type": "stream", + "text": [ + "DCO Il22 Gly-Gaba DCO UBC Glut\n", + "N_contact_pairs = 445\n", + "N_noncontact_cell_pairs = 445\n", + "N_contact_pairs = 445\n", + "N_noncontact_cell_pairs = 445\n", + "Astroependymal NN Endo NN\n", + "N_contact_pairs = 64\n", + "N_noncontact_cell_pairs = 64\n" + ] + }, + { + "name": "stderr", + "output_type": "stream", + "text": [ + ":89: RuntimeWarning: divide by zero encountered in divide\n", + ":89: RuntimeWarning: invalid value encountered in divide\n" + ] + }, + { + "name": "stdout", + "output_type": "stream", + "text": [ + "N_contact_pairs = 64\n", + "N_noncontact_cell_pairs = 64\n", + "Astro-NT NN BAM NN\n" + ] + }, + { + "name": "stderr", + "output_type": "stream", + "text": [ + ":89: RuntimeWarning: divide by zero encountered in divide\n", + ":89: RuntimeWarning: invalid value encountered in divide\n" + ] + }, + { + "name": "stdout", + "output_type": "stream", + "text": [ + "N_contact_pairs = 548\n", + "N_noncontact_cell_pairs = 548\n" + ] + }, + { + "name": "stderr", + "output_type": "stream", + "text": [ + ":89: RuntimeWarning: divide by zero encountered in divide\n", + ":89: RuntimeWarning: invalid value encountered in divide\n" + ] + }, + { + "name": "stdout", + "output_type": "stream", + "text": [ + "N_contact_pairs = 548\n", + "N_noncontact_cell_pairs = 548\n", + "CU-ECU-SPVI Foxb1 Glut CU-ECU-SPVI Foxb1 Glut\n", + "N_contact_pairs = 173\n", + "N_noncontact_cell_pairs = 173\n", + "NTS Dbh Glut NTS-PARN Neurod2 Gly-Gaba\n", + "N_contact_pairs = 299\n", + "N_noncontact_cell_pairs = 299\n", + "N_contact_pairs = 299\n", + "N_noncontact_cell_pairs = 299\n", + "SPVI-SPVC Sall3 Nfib Gly-Gaba SPVI-SPVC Sall3 Nfib Gly-Gaba\n", + "N_contact_pairs = 53\n", + "N_noncontact_cell_pairs = 53\n" + ] + }, + { + "name": "stderr", + "output_type": "stream", + "text": [ + ":89: RuntimeWarning: divide by zero encountered in divide\n", + ":89: RuntimeWarning: invalid value encountered in divide\n", + ":89: RuntimeWarning: divide by zero encountered in divide\n", + ":89: RuntimeWarning: invalid value encountered in divide\n", + ":89: RuntimeWarning: divide by zero encountered in divide\n", + ":89: RuntimeWarning: invalid value encountered in divide\n", + ":89: RuntimeWarning: divide by zero encountered in divide\n", + ":89: RuntimeWarning: invalid value encountered in divide\n", + ":89: RuntimeWarning: divide by zero encountered in divide\n", + ":89: RuntimeWarning: invalid value encountered in divide\n", + ":89: RuntimeWarning: divide by zero encountered in divide\n", + ":89: RuntimeWarning: invalid value encountered in divide\n", + ":89: RuntimeWarning: divide by zero encountered in divide\n", + ":89: RuntimeWarning: invalid value encountered in divide\n" + ] + }, + { + "name": "stdout", + "output_type": "stream", + "text": [ + "DCO Il22 Gly-Gaba DCO Il22 Gly-Gaba\n", + "N_contact_pairs = 208\n", + "N_noncontact_cell_pairs = 208\n", + "SPVO Mafa Meis2 Glut SPVO Mafa Meis2 Glut\n", + "N_contact_pairs = 43\n", + "N_noncontact_cell_pairs = 43\n", + "Astro-NT NN PAS-MV Ebf2 Gly-Gaba\n", + "N_contact_pairs = 1170\n", + "N_noncontact_cell_pairs = 1170\n" + ] + }, + { + "name": "stderr", + "output_type": "stream", + "text": [ + ":89: RuntimeWarning: divide by zero encountered in divide\n", + ":89: RuntimeWarning: invalid value encountered in divide\n" + ] + }, + { + "name": "stdout", + "output_type": "stream", + "text": [ + "N_contact_pairs = 1170\n", + "N_noncontact_cell_pairs = 1170\n", + "Endo NN SPVI-SPVC Sall3 Lhx1 Gly-Gaba\n" + ] + }, + { + "name": "stderr", + "output_type": "stream", + "text": [ + ":89: RuntimeWarning: divide by zero encountered in divide\n", + ":89: RuntimeWarning: invalid value encountered in divide\n" + ] + }, + { + "name": "stdout", + "output_type": "stream", + "text": [ + "N_contact_pairs = 793\n", + "N_noncontact_cell_pairs = 793\n", + "N_contact_pairs = 793\n", + "N_noncontact_cell_pairs = 793\n" + ] + }, + { + "name": "stderr", + "output_type": "stream", + "text": [ + ":89: RuntimeWarning: divide by zero encountered in divide\n", + ":89: RuntimeWarning: invalid value encountered in divide\n", + ":89: RuntimeWarning: divide by zero encountered in divide\n", + ":89: RuntimeWarning: invalid value encountered in divide\n" + ] + }, + { + "name": "stdout", + "output_type": "stream", + "text": [ + "Endo NN PRP Otp Gly-Gaba\n", + "N_contact_pairs = 605\n", + "N_noncontact_cell_pairs = 605\n" + ] + }, + { + "name": "stderr", + "output_type": "stream", + "text": [ + ":89: RuntimeWarning: divide by zero encountered in divide\n", + ":89: RuntimeWarning: invalid value encountered in divide\n", + ":89: RuntimeWarning: divide by zero encountered in divide\n", + ":89: RuntimeWarning: invalid value encountered in divide\n" + ] + }, + { + "name": "stdout", + "output_type": "stream", + "text": [ + "N_contact_pairs = 605\n", + "N_noncontact_cell_pairs = 605\n", + "OPC NN PARN-MDRNd-NTS Gbx2 Gly-Gaba\n", + "N_contact_pairs = 272\n", + "N_noncontact_cell_pairs = 272\n" + ] + }, + { + "name": "stderr", + "output_type": "stream", + "text": [ + ":89: RuntimeWarning: divide by zero encountered in divide\n", + ":89: RuntimeWarning: invalid value encountered in divide\n", + ":89: RuntimeWarning: divide by zero encountered in divide\n", + ":89: RuntimeWarning: invalid value encountered in divide\n" + ] + }, + { + "name": "stdout", + "output_type": "stream", + "text": [ + "N_contact_pairs = 272\n", + "N_noncontact_cell_pairs = 272\n", + "Oligo NN Peri NN\n", + "N_contact_pairs = 7366\n", + "N_noncontact_cell_pairs = 7366\n" + ] + }, + { + "name": "stderr", + "output_type": "stream", + "text": [ + ":89: RuntimeWarning: divide by zero encountered in divide\n", + ":89: RuntimeWarning: invalid value encountered in divide\n" + ] + }, + { + "name": "stdout", + "output_type": "stream", + "text": [ + "N_contact_pairs = 7366\n", + "N_noncontact_cell_pairs = 7366\n" + ] + }, + { + "name": "stderr", + "output_type": "stream", + "text": [ + ":89: RuntimeWarning: divide by zero encountered in divide\n", + ":89: RuntimeWarning: invalid value encountered in divide\n", + ":89: RuntimeWarning: divide by zero encountered in divide\n", + ":89: RuntimeWarning: invalid value encountered in divide\n", + ":89: RuntimeWarning: divide by zero encountered in divide\n", + ":89: RuntimeWarning: invalid value encountered in divide\n" + ] + }, + { + "name": "stdout", + "output_type": "stream", + "text": [ + "IO Fgl2 Glut Peri NN\n", + "N_contact_pairs = 247\n", + "N_noncontact_cell_pairs = 247\n", + "N_contact_pairs = 247\n", + "N_noncontact_cell_pairs = 247\n", + "Endo NN Oligo NN\n", + "N_contact_pairs = 53505\n", + "N_noncontact_cell_pairs = 53505\n" + ] + }, + { + "name": "stderr", + "output_type": "stream", + "text": [ + ":89: RuntimeWarning: divide by zero encountered in divide\n", + ":89: RuntimeWarning: invalid value encountered in divide\n" + ] + }, + { + "name": "stdout", + "output_type": "stream", + "text": [ + "N_contact_pairs = 53505\n", + "N_noncontact_cell_pairs = 53505\n" + ] + }, + { + "name": "stderr", + "output_type": "stream", + "text": [ + ":89: RuntimeWarning: divide by zero encountered in divide\n", + ":89: RuntimeWarning: invalid value encountered in divide\n" + ] + }, + { + "name": "stdout", + "output_type": "stream", + "text": [ + "Oligo NN PAS-MV Ebf2 Gly-Gaba\n", + "N_contact_pairs = 1217\n", + "N_noncontact_cell_pairs = 1217\n" + ] + }, + { + "name": "stderr", + "output_type": "stream", + "text": [ + ":89: RuntimeWarning: divide by zero encountered in divide\n", + ":89: RuntimeWarning: invalid value encountered in divide\n" + ] + }, + { + "name": "stdout", + "output_type": "stream", + "text": [ + "N_contact_pairs = 1217\n", + "N_noncontact_cell_pairs = 1217\n" + ] + }, + { + "name": "stderr", + "output_type": "stream", + "text": [ + ":89: RuntimeWarning: divide by zero encountered in divide\n", + ":89: RuntimeWarning: invalid value encountered in divide\n", + ":89: RuntimeWarning: divide by zero encountered in divide\n", + ":89: RuntimeWarning: invalid value encountered in divide\n", + ":89: RuntimeWarning: divide by zero encountered in divide\n", + ":89: RuntimeWarning: invalid value encountered in divide\n", + ":89: RuntimeWarning: divide by zero encountered in divide\n", + ":89: RuntimeWarning: invalid value encountered in divide\n" + ] + }, + { + "name": "stdout", + "output_type": "stream", + "text": [ + "SPVI-SPVC Sall3 Lhx1 Gly-Gaba SPVI-SPVC Sall3 Lhx1 Gly-Gaba\n", + "N_contact_pairs = 251\n", + "N_noncontact_cell_pairs = 251\n", + "NTS Phox2b Glut NTS-PARN Neurod2 Gly-Gaba\n", + "N_contact_pairs = 1146\n", + "N_noncontact_cell_pairs = 1146\n", + "N_contact_pairs = 1146\n", + "N_noncontact_cell_pairs = 1146\n", + "Astro-NT NN PRP Otp Gly-Gaba\n", + "N_contact_pairs = 878\n", + "N_noncontact_cell_pairs = 878\n" + ] + }, + { + "name": "stderr", + "output_type": "stream", + "text": [ + ":89: RuntimeWarning: divide by zero encountered in divide\n", + ":89: RuntimeWarning: invalid value encountered in divide\n" + ] + }, + { + "name": "stdout", + "output_type": "stream", + "text": [ + "N_contact_pairs = 878\n", + "N_noncontact_cell_pairs = 878\n", + "SPVC Mafa Glut SPVC Mafa Glut\n", + "N_contact_pairs = 561\n", + "N_noncontact_cell_pairs = 561\n", + "Oligo NN PRNc Prox1 Brs3 Gly-Gaba\n" + ] + }, + { + "name": "stderr", + "output_type": "stream", + "text": [ + ":89: RuntimeWarning: divide by zero encountered in divide\n", + ":89: RuntimeWarning: invalid value encountered in divide\n", + ":89: RuntimeWarning: divide by zero encountered in divide\n", + ":89: RuntimeWarning: invalid value encountered in divide\n" + ] + }, + { + "name": "stdout", + "output_type": "stream", + "text": [ + "N_contact_pairs = 65\n", + "N_noncontact_cell_pairs = 65\n" + ] + }, + { + "name": "stderr", + "output_type": "stream", + "text": [ + ":89: RuntimeWarning: divide by zero encountered in divide\n", + ":89: RuntimeWarning: invalid value encountered in divide\n" + ] + }, + { + "name": "stdout", + "output_type": "stream", + "text": [ + "N_contact_pairs = 65\n", + "N_noncontact_cell_pairs = 65\n" + ] + }, + { + "name": "stderr", + "output_type": "stream", + "text": [ + ":89: RuntimeWarning: divide by zero encountered in divide\n", + ":89: RuntimeWarning: invalid value encountered in divide\n", + ":89: RuntimeWarning: divide by zero encountered in divide\n", + ":89: RuntimeWarning: invalid value encountered in divide\n" + ] + }, + { + "name": "stdout", + "output_type": "stream", + "text": [ + "MV-SPIV Zic4 Neurod2 Glut MV-SPIV Zic4 Neurod2 Glut\n", + "N_contact_pairs = 67\n", + "N_noncontact_cell_pairs = 67\n", + "DCO Il22 Gly-Gaba Endo NN\n", + "N_contact_pairs = 563\n", + "N_noncontact_cell_pairs = 563\n" + ] + }, + { + "name": "stderr", + "output_type": "stream", + "text": [ + ":89: RuntimeWarning: divide by zero encountered in divide\n", + ":89: RuntimeWarning: invalid value encountered in divide\n" + ] + }, + { + "name": "stdout", + "output_type": "stream", + "text": [ + "N_contact_pairs = 563\n", + "N_noncontact_cell_pairs = 563\n", + "Endo NN PAS-MV Ebf2 Gly-Gaba\n" + ] + }, + { + "name": "stderr", + "output_type": "stream", + "text": [ + ":89: RuntimeWarning: divide by zero encountered in divide\n", + ":89: RuntimeWarning: invalid value encountered in divide\n" + ] + }, + { + "name": "stdout", + "output_type": "stream", + "text": [ + "N_contact_pairs = 749\n", + "N_noncontact_cell_pairs = 749\n", + "N_contact_pairs = 749\n", + "N_noncontact_cell_pairs = 749\n" + ] + }, + { + "name": "stderr", + "output_type": "stream", + "text": [ + ":89: RuntimeWarning: divide by zero encountered in divide\n", + ":89: RuntimeWarning: invalid value encountered in divide\n", + ":89: RuntimeWarning: divide by zero encountered in divide\n", + ":89: RuntimeWarning: invalid value encountered in divide\n" + ] + }, + { + "name": "stdout", + "output_type": "stream", + "text": [ + "Peri NN VCO Mafa Meis2 Glut\n", + "N_contact_pairs = 197\n", + "N_noncontact_cell_pairs = 197\n", + "N_contact_pairs = 197\n", + "N_noncontact_cell_pairs = 197\n", + "Astro-NT NN MV Nkx6-1 Gly-Gaba\n" + ] + }, + { + "name": "stderr", + "output_type": "stream", + "text": [ + ":89: RuntimeWarning: divide by zero encountered in divide\n", + ":89: RuntimeWarning: invalid value encountered in divide\n", + ":89: RuntimeWarning: divide by zero encountered in divide\n", + ":89: RuntimeWarning: invalid value encountered in divide\n" + ] + }, + { + "name": "stdout", + "output_type": "stream", + "text": [ + "N_contact_pairs = 566\n", + "N_noncontact_cell_pairs = 566\n", + "N_contact_pairs = 566\n", + "N_noncontact_cell_pairs = 566\n" + ] + }, + { + "name": "stderr", + "output_type": "stream", + "text": [ + ":89: RuntimeWarning: divide by zero encountered in divide\n", + ":89: RuntimeWarning: invalid value encountered in divide\n", + ":89: RuntimeWarning: divide by zero encountered in divide\n", + ":89: RuntimeWarning: invalid value encountered in divide\n", + ":89: RuntimeWarning: divide by zero encountered in divide\n", + ":89: RuntimeWarning: invalid value encountered in divide\n" + ] + }, + { + "name": "stdout", + "output_type": "stream", + "text": [ + "MV Nkx6-1 Gly-Gaba MV Nkx6-1 Gly-Gaba\n", + "N_contact_pairs = 123\n", + "N_noncontact_cell_pairs = 123\n", + "Microglia NN VLMC NN\n", + "N_contact_pairs = 387\n", + "N_noncontact_cell_pairs = 387\n", + "N_contact_pairs = 387\n", + "N_noncontact_cell_pairs = 387\n", + "MDRN Hoxb5 Ebf2 Gly-Gaba MDRN Hoxb5 Ebf2 Gly-Gaba\n" + ] + }, + { + "name": "stderr", + "output_type": "stream", + "text": [ + ":89: RuntimeWarning: divide by zero encountered in divide\n", + ":89: RuntimeWarning: invalid value encountered in divide\n", + ":89: RuntimeWarning: divide by zero encountered in divide\n", + ":89: RuntimeWarning: invalid value encountered in divide\n", + ":89: RuntimeWarning: divide by zero encountered in divide\n", + ":89: RuntimeWarning: invalid value encountered in divide\n" + ] + }, + { + "name": "stdout", + "output_type": "stream", + "text": [ + "N_contact_pairs = 32\n", + "N_noncontact_cell_pairs = 32\n", + "Oligo NN VCO Mafa Meis2 Glut\n", + "N_contact_pairs = 2269\n", + "N_noncontact_cell_pairs = 2269\n" + ] + }, + { + "name": "stderr", + "output_type": "stream", + "text": [ + ":89: RuntimeWarning: divide by zero encountered in divide\n", + ":89: RuntimeWarning: invalid value encountered in divide\n" + ] + }, + { + "name": "stdout", + "output_type": "stream", + "text": [ + "N_contact_pairs = 2269\n", + "N_noncontact_cell_pairs = 2269\n" + ] + }, + { + "name": "stderr", + "output_type": "stream", + "text": [ + ":89: RuntimeWarning: divide by zero encountered in divide\n", + ":89: RuntimeWarning: invalid value encountered in divide\n" + ] + }, + { + "name": "stdout", + "output_type": "stream", + "text": [ + "Astro-NT NN RPA Pax6 Hoxb5 Gly-Gaba\n", + "N_contact_pairs = 278\n", + "N_noncontact_cell_pairs = 278\n" + ] + }, + { + "name": "stderr", + "output_type": "stream", + "text": [ + ":89: RuntimeWarning: divide by zero encountered in divide\n", + ":89: RuntimeWarning: invalid value encountered in divide\n", + ":89: RuntimeWarning: divide by zero encountered in divide\n", + ":89: RuntimeWarning: invalid value encountered in divide\n" + ] + }, + { + "name": "stdout", + "output_type": "stream", + "text": [ + "N_contact_pairs = 278\n", + "N_noncontact_cell_pairs = 278\n", + "IRN Dmbx1 Pax2 Gly-Gaba IRN Dmbx1 Pax2 Gly-Gaba\n", + "N_contact_pairs = 40\n", + "N_noncontact_cell_pairs = 40\n", + "MY Prox1 Lmo7 Gly-Gaba Oligo NN\n" + ] + }, + { + "name": "stderr", + "output_type": "stream", + "text": [ + ":89: RuntimeWarning: divide by zero encountered in divide\n", + ":89: RuntimeWarning: invalid value encountered in divide\n" + ] + }, + { + "name": "stdout", + "output_type": "stream", + "text": [ + "N_contact_pairs = 308\n", + "N_noncontact_cell_pairs = 308\n" + ] + }, + { + "name": "stderr", + "output_type": "stream", + "text": [ + ":89: RuntimeWarning: divide by zero encountered in divide\n", + ":89: RuntimeWarning: invalid value encountered in divide\n" + ] + }, + { + "name": "stdout", + "output_type": "stream", + "text": [ + "N_contact_pairs = 308\n", + "N_noncontact_cell_pairs = 308\n" + ] + }, + { + "name": "stderr", + "output_type": "stream", + "text": [ + ":89: RuntimeWarning: divide by zero encountered in divide\n", + ":89: RuntimeWarning: invalid value encountered in divide\n", + ":89: RuntimeWarning: divide by zero encountered in divide\n", + ":89: RuntimeWarning: invalid value encountered in divide\n", + ":89: RuntimeWarning: divide by zero encountered in divide\n", + ":89: RuntimeWarning: invalid value encountered in divide\n" + ] + }, + { + "name": "stdout", + "output_type": "stream", + "text": [ + "OPC NN PGRN-PARN-MDRN Hoxb5 Glut\n", + "N_contact_pairs = 394\n", + "N_noncontact_cell_pairs = 394\n", + "N_contact_pairs = 394\n", + "N_noncontact_cell_pairs = 394\n", + "Olfactory\n" + ] + }, + { + "name": "stderr", + "output_type": "stream", + "text": [ + ":25: ImplicitModificationWarning: Trying to modify attribute `.obs` of view, initializing view as actual.\n", + ":28: ImplicitModificationWarning: Trying to modify attribute `.obs` of view, initializing view as actual.\n" + ] + }, + { + "name": "stdout", + "output_type": "stream", + "text": [ + "OB Dopa-Gaba OB-out Frmd7 Gaba\n", + "N_contact_pairs = 108414\n", + "N_noncontact_cell_pairs = 108414\n" + ] + }, + { + "name": "stderr", + "output_type": "stream", + "text": [ + ":89: RuntimeWarning: divide by zero encountered in divide\n", + ":89: RuntimeWarning: invalid value encountered in divide\n" + ] + }, + { + "name": "stdout", + "output_type": "stream", + "text": [ + "N_contact_pairs = 108414\n", + "N_noncontact_cell_pairs = 108414\n" + ] + }, + { + "name": "stderr", + "output_type": "stream", + "text": [ + ":89: RuntimeWarning: divide by zero encountered in divide\n", + ":89: RuntimeWarning: invalid value encountered in divide\n" + ] + }, + { + "name": "stdout", + "output_type": "stream", + "text": [ + "OB-out Frmd7 Gaba OB-out Frmd7 Gaba\n", + "N_contact_pairs = 112270\n", + "N_noncontact_cell_pairs = 112270\n" + ] + }, + { + "name": "stderr", + "output_type": "stream", + "text": [ + ":89: RuntimeWarning: divide by zero encountered in divide\n", + ":89: RuntimeWarning: invalid value encountered in divide\n" + ] + }, + { + "name": "stdout", + "output_type": "stream", + "text": [ + "OB Dopa-Gaba OB Dopa-Gaba\n", + "N_contact_pairs = 33889\n", + "N_noncontact_cell_pairs = 33889\n" + ] + }, + { + "name": "stderr", + "output_type": "stream", + "text": [ + ":89: RuntimeWarning: divide by zero encountered in divide\n", + ":89: RuntimeWarning: invalid value encountered in divide\n" + ] + }, + { + "name": "stdout", + "output_type": "stream", + "text": [ + "OB-in Frmd7 Gaba OB-in Frmd7 Gaba\n", + "N_contact_pairs = 2045718\n", + "N_noncontact_cell_pairs = 2045718\n" + ] + }, + { + "name": "stderr", + "output_type": "stream", + "text": [ + ":89: RuntimeWarning: divide by zero encountered in divide\n", + ":89: RuntimeWarning: invalid value encountered in divide\n" + ] + }, + { + "name": "stdout", + "output_type": "stream", + "text": [ + "VLMC NN VLMC NN\n", + "N_contact_pairs = 8233\n", + "N_noncontact_cell_pairs = 8233\n" + ] + }, + { + "name": "stderr", + "output_type": "stream", + "text": [ + ":89: RuntimeWarning: divide by zero encountered in divide\n", + ":89: RuntimeWarning: invalid value encountered in divide\n" + ] + }, + { + "name": "stdout", + "output_type": "stream", + "text": [ + "OEC NN OEC NN\n", + "N_contact_pairs = 46463\n", + "N_noncontact_cell_pairs = 46463\n" + ] + }, + { + "name": "stderr", + "output_type": "stream", + "text": [ + ":89: RuntimeWarning: divide by zero encountered in divide\n", + ":89: RuntimeWarning: invalid value encountered in divide\n" + ] + }, + { + "name": "stdout", + "output_type": "stream", + "text": [ + "L2/3 IT PIR-ENTl Glut L2/3 IT PIR-ENTl Glut\n", + "N_contact_pairs = 164020\n", + "N_noncontact_cell_pairs = 164020\n" + ] + }, + { + "name": "stderr", + "output_type": "stream", + "text": [ + ":89: RuntimeWarning: divide by zero encountered in divide\n", + ":89: RuntimeWarning: invalid value encountered in divide\n" + ] + }, + { + "name": "stdout", + "output_type": "stream", + "text": [ + "OB-STR-CTX Inh IMN OB-STR-CTX Inh IMN\n", + "N_contact_pairs = 80761\n", + "N_noncontact_cell_pairs = 80761\n" + ] + }, + { + "name": "stderr", + "output_type": "stream", + "text": [ + ":89: RuntimeWarning: divide by zero encountered in divide\n", + ":89: RuntimeWarning: invalid value encountered in divide\n" + ] + }, + { + "name": "stdout", + "output_type": "stream", + "text": [ + "OB Meis2 Thsd7b Gaba OB-out Frmd7 Gaba\n", + "N_contact_pairs = 74652\n", + "N_noncontact_cell_pairs = 74652\n" + ] + }, + { + "name": "stderr", + "output_type": "stream", + "text": [ + ":89: RuntimeWarning: divide by zero encountered in divide\n", + ":89: RuntimeWarning: invalid value encountered in divide\n" + ] + }, + { + "name": "stdout", + "output_type": "stream", + "text": [ + "N_contact_pairs = 74652\n", + "N_noncontact_cell_pairs = 74652\n" + ] + }, + { + "name": "stderr", + "output_type": "stream", + "text": [ + ":89: RuntimeWarning: divide by zero encountered in divide\n", + ":89: RuntimeWarning: invalid value encountered in divide\n" + ] + }, + { + "name": "stdout", + "output_type": "stream", + "text": [ + "SMC NN SMC NN\n", + "N_contact_pairs = 2209\n", + "N_noncontact_cell_pairs = 2209\n", + "OB Dopa-Gaba OB Meis2 Thsd7b Gaba\n" + ] + }, + { + "name": "stderr", + "output_type": "stream", + "text": [ + ":89: RuntimeWarning: divide by zero encountered in divide\n", + ":89: RuntimeWarning: invalid value encountered in divide\n" + ] + }, + { + "name": "stdout", + "output_type": "stream", + "text": [ + "N_contact_pairs = 34938\n", + "N_noncontact_cell_pairs = 34938\n" + ] + }, + { + "name": "stderr", + "output_type": "stream", + "text": [ + ":89: RuntimeWarning: divide by zero encountered in divide\n", + ":89: RuntimeWarning: invalid value encountered in divide\n" + ] + }, + { + "name": "stdout", + "output_type": "stream", + "text": [ + "N_contact_pairs = 34938\n", + "N_noncontact_cell_pairs = 34938\n" + ] + }, + { + "name": "stderr", + "output_type": "stream", + "text": [ + ":89: RuntimeWarning: divide by zero encountered in divide\n", + ":89: RuntimeWarning: invalid value encountered in divide\n" + ] + }, + { + "name": "stdout", + "output_type": "stream", + "text": [ + "ABC NN VLMC NN\n", + "N_contact_pairs = 3015\n", + "N_noncontact_cell_pairs = 3015\n" + ] + }, + { + "name": "stderr", + "output_type": "stream", + "text": [ + ":89: RuntimeWarning: divide by zero encountered in divide\n", + ":89: RuntimeWarning: invalid value encountered in divide\n" + ] + }, + { + "name": "stdout", + "output_type": "stream", + "text": [ + "N_contact_pairs = 3015\n", + "N_noncontact_cell_pairs = 3015\n", + "OB Eomes Ms4a15 Glut OB Eomes Ms4a15 Glut\n" + ] + }, + { + "name": "stderr", + "output_type": "stream", + "text": [ + ":89: RuntimeWarning: divide by zero encountered in divide\n", + ":89: RuntimeWarning: invalid value encountered in divide\n" + ] + }, + { + "name": "stdout", + "output_type": "stream", + "text": [ + "N_contact_pairs = 23372\n", + "N_noncontact_cell_pairs = 23372\n" + ] + }, + { + "name": "stderr", + "output_type": "stream", + "text": [ + ":89: RuntimeWarning: divide by zero encountered in divide\n", + ":89: RuntimeWarning: invalid value encountered in divide\n" + ] + }, + { + "name": "stdout", + "output_type": "stream", + "text": [ + "OB Meis2 Thsd7b Gaba OB Meis2 Thsd7b Gaba\n", + "N_contact_pairs = 17965\n", + "N_noncontact_cell_pairs = 17965\n" + ] + }, + { + "name": "stderr", + "output_type": "stream", + "text": [ + ":89: RuntimeWarning: divide by zero encountered in divide\n", + ":89: RuntimeWarning: invalid value encountered in divide\n" + ] + }, + { + "name": "stdout", + "output_type": "stream", + "text": [ + "SMC NN VLMC NN\n", + "N_contact_pairs = 2636\n", + "N_noncontact_cell_pairs = 2636\n" + ] + }, + { + "name": "stderr", + "output_type": "stream", + "text": [ + ":89: RuntimeWarning: divide by zero encountered in divide\n", + ":89: RuntimeWarning: invalid value encountered in divide\n" + ] + }, + { + "name": "stdout", + "output_type": "stream", + "text": [ + "N_contact_pairs = 2636\n", + "N_noncontact_cell_pairs = 2636\n", + "BAM NN VLMC NN\n", + "N_contact_pairs = 1903\n", + "N_noncontact_cell_pairs = 1903\n" + ] + }, + { + "name": "stderr", + "output_type": "stream", + "text": [ + ":89: RuntimeWarning: divide by zero encountered in divide\n", + ":89: RuntimeWarning: invalid value encountered in divide\n", + ":89: RuntimeWarning: divide by zero encountered in divide\n", + ":89: RuntimeWarning: invalid value encountered in divide\n" + ] + }, + { + "name": "stdout", + "output_type": "stream", + "text": [ + "N_contact_pairs = 1903\n", + "N_noncontact_cell_pairs = 1903\n", + "OB Dopa-Gaba OB Eomes Ms4a15 Glut\n" + ] + }, + { + "name": "stderr", + "output_type": "stream", + "text": [ + ":89: RuntimeWarning: divide by zero encountered in divide\n", + ":89: RuntimeWarning: invalid value encountered in divide\n" + ] + }, + { + "name": "stdout", + "output_type": "stream", + "text": [ + "N_contact_pairs = 31575\n", + "N_noncontact_cell_pairs = 31575\n" + ] + }, + { + "name": "stderr", + "output_type": "stream", + "text": [ + ":89: RuntimeWarning: divide by zero encountered in divide\n", + ":89: RuntimeWarning: invalid value encountered in divide\n" + ] + }, + { + "name": "stdout", + "output_type": "stream", + "text": [ + "N_contact_pairs = 31575\n", + "N_noncontact_cell_pairs = 31575\n" + ] + }, + { + "name": "stderr", + "output_type": "stream", + "text": [ + ":89: RuntimeWarning: divide by zero encountered in divide\n", + ":89: RuntimeWarning: invalid value encountered in divide\n" + ] + }, + { + "name": "stdout", + "output_type": "stream", + "text": [ + "ABC NN ABC NN\n", + "N_contact_pairs = 1137\n", + "N_noncontact_cell_pairs = 1137\n", + "OB Eomes Ms4a15 Glut OB-out Frmd7 Gaba\n" + ] + }, + { + "name": "stderr", + "output_type": "stream", + "text": [ + ":89: RuntimeWarning: divide by zero encountered in divide\n", + ":89: RuntimeWarning: invalid value encountered in divide\n" + ] + }, + { + "name": "stdout", + "output_type": "stream", + "text": [ + "N_contact_pairs = 56296\n", + "N_noncontact_cell_pairs = 56296\n" + ] + }, + { + "name": "stderr", + "output_type": "stream", + "text": [ + ":89: RuntimeWarning: divide by zero encountered in divide\n", + ":89: RuntimeWarning: invalid value encountered in divide\n" + ] + }, + { + "name": "stdout", + "output_type": "stream", + "text": [ + "N_contact_pairs = 56296\n", + "N_noncontact_cell_pairs = 56296\n" + ] + }, + { + "name": "stderr", + "output_type": "stream", + "text": [ + ":89: RuntimeWarning: divide by zero encountered in divide\n", + ":89: RuntimeWarning: invalid value encountered in divide\n" + ] + }, + { + "name": "stdout", + "output_type": "stream", + "text": [ + "Endo NN SMC NN\n", + "N_contact_pairs = 3920\n", + "N_noncontact_cell_pairs = 3920\n" + ] + }, + { + "name": "stderr", + "output_type": "stream", + "text": [ + ":89: RuntimeWarning: divide by zero encountered in divide\n", + ":89: RuntimeWarning: invalid value encountered in divide\n" + ] + }, + { + "name": "stdout", + "output_type": "stream", + "text": [ + "N_contact_pairs = 3920\n", + "N_noncontact_cell_pairs = 3920\n" + ] + }, + { + "name": "stderr", + "output_type": "stream", + "text": [ + ":89: RuntimeWarning: divide by zero encountered in divide\n", + ":89: RuntimeWarning: invalid value encountered in divide\n" + ] + }, + { + "name": "stdout", + "output_type": "stream", + "text": [ + "OB Trdn Gaba OB-in Frmd7 Gaba\n", + "N_contact_pairs = 358950\n", + "N_noncontact_cell_pairs = 358950\n" + ] + }, + { + "name": "stderr", + "output_type": "stream", + "text": [ + ":89: RuntimeWarning: divide by zero encountered in divide\n", + ":89: RuntimeWarning: invalid value encountered in divide\n" + ] + }, + { + "name": "stdout", + "output_type": "stream", + "text": [ + "N_contact_pairs = 358950\n", + "N_noncontact_cell_pairs = 358950\n" + ] + }, + { + "name": "stderr", + "output_type": "stream", + "text": [ + ":89: RuntimeWarning: divide by zero encountered in divide\n", + ":89: RuntimeWarning: invalid value encountered in divide\n" + ] + }, + { + "name": "stdout", + "output_type": "stream", + "text": [ + "Endo NN Peri NN\n", + "N_contact_pairs = 6672\n", + "N_noncontact_cell_pairs = 6672\n" + ] + }, + { + "name": "stderr", + "output_type": "stream", + "text": [ + ":89: RuntimeWarning: divide by zero encountered in divide\n", + ":89: RuntimeWarning: invalid value encountered in divide\n" + ] + }, + { + "name": "stdout", + "output_type": "stream", + "text": [ + "N_contact_pairs = 6672\n", + "N_noncontact_cell_pairs = 6672\n" + ] + }, + { + "name": "stderr", + "output_type": "stream", + "text": [ + ":89: RuntimeWarning: divide by zero encountered in divide\n", + ":89: RuntimeWarning: invalid value encountered in divide\n" + ] + }, + { + "name": "stdout", + "output_type": "stream", + "text": [ + "Endo NN VLMC NN\n", + "N_contact_pairs = 6711\n", + "N_noncontact_cell_pairs = 6711\n" + ] + }, + { + "name": "stderr", + "output_type": "stream", + "text": [ + ":89: RuntimeWarning: divide by zero encountered in divide\n", + ":89: RuntimeWarning: invalid value encountered in divide\n" + ] + }, + { + "name": "stdout", + "output_type": "stream", + "text": [ + "N_contact_pairs = 6711\n", + "N_noncontact_cell_pairs = 6711\n" + ] + }, + { + "name": "stderr", + "output_type": "stream", + "text": [ + ":89: RuntimeWarning: divide by zero encountered in divide\n", + ":89: RuntimeWarning: invalid value encountered in divide\n" + ] + }, + { + "name": "stdout", + "output_type": "stream", + "text": [ + "OB Eomes Ms4a15 Glut OB Meis2 Thsd7b Gaba\n", + "N_contact_pairs = 26696\n", + "N_noncontact_cell_pairs = 26696\n" + ] + }, + { + "name": "stderr", + "output_type": "stream", + "text": [ + ":89: RuntimeWarning: divide by zero encountered in divide\n", + ":89: RuntimeWarning: invalid value encountered in divide\n" + ] + }, + { + "name": "stdout", + "output_type": "stream", + "text": [ + "N_contact_pairs = 26696\n", + "N_noncontact_cell_pairs = 26696\n" + ] + }, + { + "name": "stderr", + "output_type": "stream", + "text": [ + ":89: RuntimeWarning: divide by zero encountered in divide\n", + ":89: RuntimeWarning: invalid value encountered in divide\n" + ] + }, + { + "name": "stdout", + "output_type": "stream", + "text": [ + "Astro-OLF NN OB-STR-CTX Inh IMN\n", + "N_contact_pairs = 22844\n", + "N_noncontact_cell_pairs = 22844\n" + ] + }, + { + "name": "stderr", + "output_type": "stream", + "text": [ + ":89: RuntimeWarning: divide by zero encountered in divide\n", + ":89: RuntimeWarning: invalid value encountered in divide\n" + ] + }, + { + "name": "stdout", + "output_type": "stream", + "text": [ + "N_contact_pairs = 22844\n", + "N_noncontact_cell_pairs = 22844\n" + ] + }, + { + "name": "stderr", + "output_type": "stream", + "text": [ + ":89: RuntimeWarning: divide by zero encountered in divide\n", + ":89: RuntimeWarning: invalid value encountered in divide\n" + ] + }, + { + "name": "stdout", + "output_type": "stream", + "text": [ + "Astro-OLF NN OB-out Frmd7 Gaba\n", + "N_contact_pairs = 29484\n", + "N_noncontact_cell_pairs = 29484\n" + ] + }, + { + "name": "stderr", + "output_type": "stream", + "text": [ + ":89: RuntimeWarning: divide by zero encountered in divide\n", + ":89: RuntimeWarning: invalid value encountered in divide\n" + ] + }, + { + "name": "stdout", + "output_type": "stream", + "text": [ + "N_contact_pairs = 29484\n", + "N_noncontact_cell_pairs = 29484\n" + ] + }, + { + "name": "stderr", + "output_type": "stream", + "text": [ + ":89: RuntimeWarning: divide by zero encountered in divide\n", + ":89: RuntimeWarning: invalid value encountered in divide\n" + ] + }, + { + "name": "stdout", + "output_type": "stream", + "text": [ + "Endo NN Endo NN\n", + "N_contact_pairs = 19623\n", + "N_noncontact_cell_pairs = 19623\n" + ] + }, + { + "name": "stderr", + "output_type": "stream", + "text": [ + ":89: RuntimeWarning: divide by zero encountered in divide\n", + ":89: RuntimeWarning: invalid value encountered in divide\n" + ] + }, + { + "name": "stdout", + "output_type": "stream", + "text": [ + "BAM NN SMC NN\n", + "N_contact_pairs = 595\n", + "N_noncontact_cell_pairs = 595\n", + "N_contact_pairs = 595\n", + "N_noncontact_cell_pairs = 595\n", + "OEC NN VLMC NN\n" + ] + }, + { + "name": "stderr", + "output_type": "stream", + "text": [ + ":89: RuntimeWarning: divide by zero encountered in divide\n", + ":89: RuntimeWarning: invalid value encountered in divide\n", + ":89: RuntimeWarning: divide by zero encountered in divide\n", + ":89: RuntimeWarning: invalid value encountered in divide\n" + ] + }, + { + "name": "stdout", + "output_type": "stream", + "text": [ + "N_contact_pairs = 5931\n", + "N_noncontact_cell_pairs = 5931\n" + ] + }, + { + "name": "stderr", + "output_type": "stream", + "text": [ + ":89: RuntimeWarning: divide by zero encountered in divide\n", + ":89: RuntimeWarning: invalid value encountered in divide\n" + ] + }, + { + "name": "stdout", + "output_type": "stream", + "text": [ + "N_contact_pairs = 5931\n", + "N_noncontact_cell_pairs = 5931\n" + ] + }, + { + "name": "stderr", + "output_type": "stream", + "text": [ + ":89: RuntimeWarning: divide by zero encountered in divide\n", + ":89: RuntimeWarning: invalid value encountered in divide\n" + ] + }, + { + "name": "stdout", + "output_type": "stream", + "text": [ + "Oligo NN Oligo NN\n", + "N_contact_pairs = 8369\n", + "N_noncontact_cell_pairs = 8369\n" + ] + }, + { + "name": "stderr", + "output_type": "stream", + "text": [ + ":89: RuntimeWarning: divide by zero encountered in divide\n", + ":89: RuntimeWarning: invalid value encountered in divide\n" + ] + }, + { + "name": "stdout", + "output_type": "stream", + "text": [ + "IT AON-TT-DP Glut IT AON-TT-DP Glut\n", + "N_contact_pairs = 44800\n", + "N_noncontact_cell_pairs = 44800\n" + ] + }, + { + "name": "stderr", + "output_type": "stream", + "text": [ + ":89: RuntimeWarning: divide by zero encountered in divide\n", + ":89: RuntimeWarning: invalid value encountered in divide\n" + ] + }, + { + "name": "stdout", + "output_type": "stream", + "text": [ + "BAM NN Endo NN\n", + "N_contact_pairs = 1733\n", + "N_noncontact_cell_pairs = 1733\n" + ] + }, + { + "name": "stderr", + "output_type": "stream", + "text": [ + ":89: RuntimeWarning: divide by zero encountered in divide\n", + ":89: RuntimeWarning: invalid value encountered in divide\n" + ] + }, + { + "name": "stdout", + "output_type": "stream", + "text": [ + "N_contact_pairs = 1733\n", + "N_noncontact_cell_pairs = 1733\n", + "Astro-OLF NN OB Dopa-Gaba\n" + ] + }, + { + "name": "stderr", + "output_type": "stream", + "text": [ + ":89: RuntimeWarning: divide by zero encountered in divide\n", + ":89: RuntimeWarning: invalid value encountered in divide\n" + ] + }, + { + "name": "stdout", + "output_type": "stream", + "text": [ + "N_contact_pairs = 14214\n", + "N_noncontact_cell_pairs = 14214\n" + ] + }, + { + "name": "stderr", + "output_type": "stream", + "text": [ + ":89: RuntimeWarning: divide by zero encountered in divide\n", + ":89: RuntimeWarning: invalid value encountered in divide\n" + ] + }, + { + "name": "stdout", + "output_type": "stream", + "text": [ + "N_contact_pairs = 14214\n", + "N_noncontact_cell_pairs = 14214\n" + ] + }, + { + "name": "stderr", + "output_type": "stream", + "text": [ + ":89: RuntimeWarning: divide by zero encountered in divide\n", + ":89: RuntimeWarning: invalid value encountered in divide\n" + ] + }, + { + "name": "stdout", + "output_type": "stream", + "text": [ + "COAp Grxcr2 Glut COAp Grxcr2 Glut\n", + "N_contact_pairs = 9783\n", + "N_noncontact_cell_pairs = 9783\n" + ] + }, + { + "name": "stderr", + "output_type": "stream", + "text": [ + ":89: RuntimeWarning: divide by zero encountered in divide\n", + ":89: RuntimeWarning: invalid value encountered in divide\n", + ":89: RuntimeWarning: divide by zero encountered in divide\n", + ":89: RuntimeWarning: invalid value encountered in divide\n" + ] + }, + { + "name": "stdout", + "output_type": "stream", + "text": [ + "BAM NN BAM NN\n", + "N_contact_pairs = 198\n", + "N_noncontact_cell_pairs = 198\n", + "OB Dopa-Gaba OB-STR-CTX Inh IMN\n", + "N_contact_pairs = 1541\n", + "N_noncontact_cell_pairs = 1541\n" + ] + }, + { + "name": "stderr", + "output_type": "stream", + "text": [ + ":89: RuntimeWarning: divide by zero encountered in divide\n", + ":89: RuntimeWarning: invalid value encountered in divide\n" + ] + }, + { + "name": "stdout", + "output_type": "stream", + "text": [ + "N_contact_pairs = 1541\n", + "N_noncontact_cell_pairs = 1541\n", + "ABC NN BAM NN\n", + "N_contact_pairs = 298\n", + "N_noncontact_cell_pairs = 298\n" + ] + }, + { + "name": "stderr", + "output_type": "stream", + "text": [ + ":89: RuntimeWarning: divide by zero encountered in divide\n", + ":89: RuntimeWarning: invalid value encountered in divide\n", + ":89: RuntimeWarning: divide by zero encountered in divide\n", + ":89: RuntimeWarning: invalid value encountered in divide\n", + ":89: RuntimeWarning: divide by zero encountered in divide\n", + ":89: RuntimeWarning: invalid value encountered in divide\n", + ":89: RuntimeWarning: divide by zero encountered in divide\n", + ":89: RuntimeWarning: invalid value encountered in divide\n" + ] + }, + { + "name": "stdout", + "output_type": "stream", + "text": [ + "N_contact_pairs = 298\n", + "N_noncontact_cell_pairs = 298\n", + "Ependymal NN Ependymal NN\n", + "N_contact_pairs = 164\n", + "N_noncontact_cell_pairs = 28\n", + "OB-STR-CTX Inh IMN OB-out Frmd7 Gaba\n", + "N_contact_pairs = 3194\n", + "N_noncontact_cell_pairs = 3194\n" + ] + }, + { + "name": "stderr", + "output_type": "stream", + "text": [ + ":89: RuntimeWarning: divide by zero encountered in divide\n", + ":89: RuntimeWarning: invalid value encountered in divide\n" + ] + }, + { + "name": "stdout", + "output_type": "stream", + "text": [ + "N_contact_pairs = 3194\n", + "N_noncontact_cell_pairs = 3194\n" + ] + }, + { + "name": "stderr", + "output_type": "stream", + "text": [ + ":89: RuntimeWarning: divide by zero encountered in divide\n", + ":89: RuntimeWarning: invalid value encountered in divide\n" + ] + }, + { + "name": "stdout", + "output_type": "stream", + "text": [ + "OB Trdn Gaba OB Trdn Gaba\n", + "N_contact_pairs = 20132\n", + "N_noncontact_cell_pairs = 20132\n" + ] + }, + { + "name": "stderr", + "output_type": "stream", + "text": [ + ":89: RuntimeWarning: divide by zero encountered in divide\n", + ":89: RuntimeWarning: invalid value encountered in divide\n" + ] + }, + { + "name": "stdout", + "output_type": "stream", + "text": [ + "Endo NN Microglia NN\n", + "N_contact_pairs = 11406\n", + "N_noncontact_cell_pairs = 11406\n" + ] + }, + { + "name": "stderr", + "output_type": "stream", + "text": [ + ":89: RuntimeWarning: divide by zero encountered in divide\n", + ":89: RuntimeWarning: invalid value encountered in divide\n" + ] + }, + { + "name": "stdout", + "output_type": "stream", + "text": [ + "N_contact_pairs = 11406\n", + "N_noncontact_cell_pairs = 11406\n" + ] + }, + { + "name": "stderr", + "output_type": "stream", + "text": [ + ":89: RuntimeWarning: divide by zero encountered in divide\n", + ":89: RuntimeWarning: invalid value encountered in divide\n" + ] + }, + { + "name": "stdout", + "output_type": "stream", + "text": [ + "BAM NN OEC NN\n", + "N_contact_pairs = 1480\n", + "N_noncontact_cell_pairs = 1480\n" + ] + }, + { + "name": "stderr", + "output_type": "stream", + "text": [ + ":89: RuntimeWarning: divide by zero encountered in divide\n", + ":89: RuntimeWarning: invalid value encountered in divide\n", + ":89: RuntimeWarning: divide by zero encountered in divide\n", + ":89: RuntimeWarning: invalid value encountered in divide\n" + ] + }, + { + "name": "stdout", + "output_type": "stream", + "text": [ + "N_contact_pairs = 1480\n", + "N_noncontact_cell_pairs = 1480\n", + "Microglia NN OB-out Frmd7 Gaba\n", + "N_contact_pairs = 8269\n", + "N_noncontact_cell_pairs = 8269\n" + ] + }, + { + "name": "stderr", + "output_type": "stream", + "text": [ + ":89: RuntimeWarning: divide by zero encountered in divide\n", + ":89: RuntimeWarning: invalid value encountered in divide\n" + ] + }, + { + "name": "stdout", + "output_type": "stream", + "text": [ + "N_contact_pairs = 8269\n", + "N_noncontact_cell_pairs = 8269\n" + ] + }, + { + "name": "stderr", + "output_type": "stream", + "text": [ + ":89: RuntimeWarning: divide by zero encountered in divide\n", + ":89: RuntimeWarning: invalid value encountered in divide\n" + ] + }, + { + "name": "stdout", + "output_type": "stream", + "text": [ + "Endo NN OB-out Frmd7 Gaba\n", + "N_contact_pairs = 32904\n", + "N_noncontact_cell_pairs = 32904\n" + ] + }, + { + "name": "stderr", + "output_type": "stream", + "text": [ + ":89: RuntimeWarning: divide by zero encountered in divide\n", + ":89: RuntimeWarning: invalid value encountered in divide\n" + ] + }, + { + "name": "stdout", + "output_type": "stream", + "text": [ + "N_contact_pairs = 32904\n", + "N_noncontact_cell_pairs = 32904\n" + ] + }, + { + "name": "stderr", + "output_type": "stream", + "text": [ + ":89: RuntimeWarning: divide by zero encountered in divide\n", + ":89: RuntimeWarning: invalid value encountered in divide\n" + ] + }, + { + "name": "stdout", + "output_type": "stream", + "text": [ + "Astro-OLF NN OB Eomes Ms4a15 Glut\n", + "N_contact_pairs = 13993\n", + "N_noncontact_cell_pairs = 13993\n" + ] + }, + { + "name": "stderr", + "output_type": "stream", + "text": [ + ":89: RuntimeWarning: divide by zero encountered in divide\n", + ":89: RuntimeWarning: invalid value encountered in divide\n" + ] + }, + { + "name": "stdout", + "output_type": "stream", + "text": [ + "N_contact_pairs = 13993\n", + "N_noncontact_cell_pairs = 13993\n" + ] + }, + { + "name": "stderr", + "output_type": "stream", + "text": [ + ":89: RuntimeWarning: divide by zero encountered in divide\n", + ":89: RuntimeWarning: invalid value encountered in divide\n" + ] + }, + { + "name": "stdout", + "output_type": "stream", + "text": [ + "Lymphoid NN VLMC NN\n", + "N_contact_pairs = 205\n", + "N_noncontact_cell_pairs = 205\n" + ] + }, + { + "name": "stderr", + "output_type": "stream", + "text": [ + ":89: RuntimeWarning: divide by zero encountered in divide\n", + ":89: RuntimeWarning: invalid value encountered in divide\n", + ":89: RuntimeWarning: divide by zero encountered in divide\n", + ":89: RuntimeWarning: invalid value encountered in divide\n" + ] + }, + { + "name": "stdout", + "output_type": "stream", + "text": [ + "N_contact_pairs = 205\n", + "N_noncontact_cell_pairs = 205\n", + "OPC NN OPC NN\n", + "N_contact_pairs = 1762\n", + "N_noncontact_cell_pairs = 1762\n", + "Astro-OLF NN OB Meis2 Thsd7b Gaba\n" + ] + }, + { + "name": "stderr", + "output_type": "stream", + "text": [ + ":89: RuntimeWarning: divide by zero encountered in divide\n", + ":89: RuntimeWarning: invalid value encountered in divide\n" + ] + }, + { + "name": "stdout", + "output_type": "stream", + "text": [ + "N_contact_pairs = 11658\n", + "N_noncontact_cell_pairs = 11658\n" + ] + }, + { + "name": "stderr", + "output_type": "stream", + "text": [ + ":89: RuntimeWarning: divide by zero encountered in divide\n", + ":89: RuntimeWarning: invalid value encountered in divide\n" + ] + }, + { + "name": "stdout", + "output_type": "stream", + "text": [ + "N_contact_pairs = 11658\n", + "N_noncontact_cell_pairs = 11658\n" + ] + }, + { + "name": "stderr", + "output_type": "stream", + "text": [ + ":89: RuntimeWarning: divide by zero encountered in divide\n", + ":89: RuntimeWarning: invalid value encountered in divide\n" + ] + }, + { + "name": "stdout", + "output_type": "stream", + "text": [ + "ABC NN OEC NN\n", + "N_contact_pairs = 1107\n", + "N_noncontact_cell_pairs = 1107\n" + ] + }, + { + "name": "stderr", + "output_type": "stream", + "text": [ + ":89: RuntimeWarning: divide by zero encountered in divide\n", + ":89: RuntimeWarning: invalid value encountered in divide\n", + ":89: RuntimeWarning: divide by zero encountered in divide\n", + ":89: RuntimeWarning: invalid value encountered in divide\n" + ] + }, + { + "name": "stdout", + "output_type": "stream", + "text": [ + "N_contact_pairs = 1107\n", + "N_noncontact_cell_pairs = 1107\n", + "Microglia NN OB Dopa-Gaba\n", + "N_contact_pairs = 4291\n", + "N_noncontact_cell_pairs = 4291\n" + ] + }, + { + "name": "stderr", + "output_type": "stream", + "text": [ + ":89: RuntimeWarning: divide by zero encountered in divide\n", + ":89: RuntimeWarning: invalid value encountered in divide\n" + ] + }, + { + "name": "stdout", + "output_type": "stream", + "text": [ + "N_contact_pairs = 4291\n", + "N_noncontact_cell_pairs = 4291\n" + ] + }, + { + "name": "stderr", + "output_type": "stream", + "text": [ + ":89: RuntimeWarning: divide by zero encountered in divide\n", + ":89: RuntimeWarning: invalid value encountered in divide\n" + ] + }, + { + "name": "stdout", + "output_type": "stream", + "text": [ + "OB Dopa-Gaba Oligo NN\n", + "N_contact_pairs = 2416\n", + "N_noncontact_cell_pairs = 2416\n" + ] + }, + { + "name": "stderr", + "output_type": "stream", + "text": [ + ":89: RuntimeWarning: divide by zero encountered in divide\n", + ":89: RuntimeWarning: invalid value encountered in divide\n" + ] + }, + { + "name": "stdout", + "output_type": "stream", + "text": [ + "N_contact_pairs = 2416\n", + "N_noncontact_cell_pairs = 2416\n", + "OB-out Frmd7 Gaba Oligo NN\n" + ] + }, + { + "name": "stderr", + "output_type": "stream", + "text": [ + ":89: RuntimeWarning: divide by zero encountered in divide\n", + ":89: RuntimeWarning: invalid value encountered in divide\n" + ] + }, + { + "name": "stdout", + "output_type": "stream", + "text": [ + "N_contact_pairs = 4205\n", + "N_noncontact_cell_pairs = 4205\n" + ] + }, + { + "name": "stderr", + "output_type": "stream", + "text": [ + ":89: RuntimeWarning: divide by zero encountered in divide\n", + ":89: RuntimeWarning: invalid value encountered in divide\n" + ] + }, + { + "name": "stdout", + "output_type": "stream", + "text": [ + "N_contact_pairs = 4205\n", + "N_noncontact_cell_pairs = 4205\n" + ] + }, + { + "name": "stderr", + "output_type": "stream", + "text": [ + ":89: RuntimeWarning: divide by zero encountered in divide\n", + ":89: RuntimeWarning: invalid value encountered in divide\n" + ] + }, + { + "name": "stdout", + "output_type": "stream", + "text": [ + "Microglia NN OEC NN\n", + "N_contact_pairs = 2956\n", + "N_noncontact_cell_pairs = 2956\n" + ] + }, + { + "name": "stderr", + "output_type": "stream", + "text": [ + ":89: RuntimeWarning: divide by zero encountered in divide\n", + ":89: RuntimeWarning: invalid value encountered in divide\n" + ] + }, + { + "name": "stdout", + "output_type": "stream", + "text": [ + "N_contact_pairs = 2956\n", + "N_noncontact_cell_pairs = 2956\n", + "ABC NN SMC NN\n" + ] + }, + { + "name": "stderr", + "output_type": "stream", + "text": [ + ":89: RuntimeWarning: divide by zero encountered in divide\n", + ":89: RuntimeWarning: invalid value encountered in divide\n", + ":89: RuntimeWarning: divide by zero encountered in divide\n", + ":89: RuntimeWarning: invalid value encountered in divide\n", + ":89: RuntimeWarning: divide by zero encountered in divide\n", + ":89: RuntimeWarning: invalid value encountered in divide\n" + ] + }, + { + "name": "stdout", + "output_type": "stream", + "text": [ + "N_contact_pairs = 290\n", + "N_noncontact_cell_pairs = 290\n", + "N_contact_pairs = 290\n", + "N_noncontact_cell_pairs = 290\n", + "DC NN VLMC NN\n", + "N_contact_pairs = 116\n", + "N_noncontact_cell_pairs = 116\n" + ] + }, + { + "name": "stderr", + "output_type": "stream", + "text": [ + ":89: RuntimeWarning: divide by zero encountered in divide\n", + ":89: RuntimeWarning: invalid value encountered in divide\n", + ":89: RuntimeWarning: divide by zero encountered in divide\n", + ":89: RuntimeWarning: invalid value encountered in divide\n" + ] + }, + { + "name": "stdout", + "output_type": "stream", + "text": [ + "N_contact_pairs = 116\n", + "N_noncontact_cell_pairs = 116\n", + "Astro-OLF NN Endo NN\n", + "N_contact_pairs = 10900\n", + "N_noncontact_cell_pairs = 10900\n" + ] + }, + { + "name": "stderr", + "output_type": "stream", + "text": [ + ":89: RuntimeWarning: divide by zero encountered in divide\n", + ":89: RuntimeWarning: invalid value encountered in divide\n" + ] + }, + { + "name": "stdout", + "output_type": "stream", + "text": [ + "N_contact_pairs = 10900\n", + "N_noncontact_cell_pairs = 10900\n" + ] + }, + { + "name": "stderr", + "output_type": "stream", + "text": [ + ":89: RuntimeWarning: divide by zero encountered in divide\n", + ":89: RuntimeWarning: invalid value encountered in divide\n", + ":89: RuntimeWarning: divide by zero encountered in divide\n", + ":89: RuntimeWarning: invalid value encountered in divide\n" + ] + }, + { + "name": "stdout", + "output_type": "stream", + "text": [ + "Lymphoid NN Lymphoid NN\n", + "N_contact_pairs = 26\n", + "N_noncontact_cell_pairs = 26\n", + "OB-out Frmd7 Gaba Peri NN\n", + "N_contact_pairs = 3700\n", + "N_noncontact_cell_pairs = 3700\n" + ] + }, + { + "name": "stderr", + "output_type": "stream", + "text": [ + ":89: RuntimeWarning: divide by zero encountered in divide\n", + ":89: RuntimeWarning: invalid value encountered in divide\n" + ] + }, + { + "name": "stdout", + "output_type": "stream", + "text": [ + "N_contact_pairs = 3700\n", + "N_noncontact_cell_pairs = 3700\n" + ] + }, + { + "name": "stderr", + "output_type": "stream", + "text": [ + ":89: RuntimeWarning: divide by zero encountered in divide\n", + ":89: RuntimeWarning: invalid value encountered in divide\n" + ] + }, + { + "name": "stdout", + "output_type": "stream", + "text": [ + "Astro-OLF NN Astro-OLF NN\n", + "N_contact_pairs = 6565\n", + "N_noncontact_cell_pairs = 6565\n" + ] + }, + { + "name": "stderr", + "output_type": "stream", + "text": [ + ":89: RuntimeWarning: divide by zero encountered in divide\n", + ":89: RuntimeWarning: invalid value encountered in divide\n", + ":89: RuntimeWarning: divide by zero encountered in divide\n", + ":89: RuntimeWarning: invalid value encountered in divide\n" + ] + }, + { + "name": "stdout", + "output_type": "stream", + "text": [ + "OB-mi Frmd7 Gaba OB-mi Frmd7 Gaba\n", + "N_contact_pairs = 791\n", + "N_noncontact_cell_pairs = 791\n", + "Peri NN Peri NN\n", + "N_contact_pairs = 398\n", + "N_noncontact_cell_pairs = 398\n" + ] + }, + { + "name": "stderr", + "output_type": "stream", + "text": [ + ":89: RuntimeWarning: divide by zero encountered in divide\n", + ":89: RuntimeWarning: invalid value encountered in divide\n" + ] + }, + { + "name": "stdout", + "output_type": "stream", + "text": [ + "Astro-OLF NN Oligo NN\n", + "N_contact_pairs = 4571\n", + "N_noncontact_cell_pairs = 4571\n" + ] + }, + { + "name": "stderr", + "output_type": "stream", + "text": [ + ":89: RuntimeWarning: divide by zero encountered in divide\n", + ":89: RuntimeWarning: invalid value encountered in divide\n" + ] + }, + { + "name": "stdout", + "output_type": "stream", + "text": [ + "N_contact_pairs = 4571\n", + "N_noncontact_cell_pairs = 4571\n" + ] + }, + { + "name": "stderr", + "output_type": "stream", + "text": [ + ":89: RuntimeWarning: divide by zero encountered in divide\n", + ":89: RuntimeWarning: invalid value encountered in divide\n" + ] + }, + { + "name": "stdout", + "output_type": "stream", + "text": [ + "Peri NN VLMC NN\n", + "N_contact_pairs = 628\n", + "N_noncontact_cell_pairs = 628\n" + ] + }, + { + "name": "stderr", + "output_type": "stream", + "text": [ + ":89: RuntimeWarning: divide by zero encountered in divide\n", + ":89: RuntimeWarning: invalid value encountered in divide\n" + ] + }, + { + "name": "stdout", + "output_type": "stream", + "text": [ + "N_contact_pairs = 628\n", + "N_noncontact_cell_pairs = 628\n", + "Endo NN OB Meis2 Thsd7b Gaba\n" + ] + }, + { + "name": "stderr", + "output_type": "stream", + "text": [ + ":89: RuntimeWarning: divide by zero encountered in divide\n", + ":89: RuntimeWarning: invalid value encountered in divide\n" + ] + }, + { + "name": "stdout", + "output_type": "stream", + "text": [ + "N_contact_pairs = 14227\n", + "N_noncontact_cell_pairs = 14227\n" + ] + }, + { + "name": "stderr", + "output_type": "stream", + "text": [ + ":89: RuntimeWarning: divide by zero encountered in divide\n", + ":89: RuntimeWarning: invalid value encountered in divide\n" + ] + }, + { + "name": "stdout", + "output_type": "stream", + "text": [ + "N_contact_pairs = 14227\n", + "N_noncontact_cell_pairs = 14227\n" + ] + }, + { + "name": "stderr", + "output_type": "stream", + "text": [ + ":89: RuntimeWarning: divide by zero encountered in divide\n", + ":89: RuntimeWarning: invalid value encountered in divide\n" + ] + }, + { + "name": "stdout", + "output_type": "stream", + "text": [ + "Astro-OLF NN Microglia NN\n", + "N_contact_pairs = 3667\n", + "N_noncontact_cell_pairs = 3667\n" + ] + }, + { + "name": "stderr", + "output_type": "stream", + "text": [ + ":89: RuntimeWarning: divide by zero encountered in divide\n", + ":89: RuntimeWarning: invalid value encountered in divide\n" + ] + }, + { + "name": "stdout", + "output_type": "stream", + "text": [ + "N_contact_pairs = 3667\n", + "N_noncontact_cell_pairs = 3667\n", + "OEC NN SMC NN\n" + ] + }, + { + "name": "stderr", + "output_type": "stream", + "text": [ + ":89: RuntimeWarning: divide by zero encountered in divide\n", + ":89: RuntimeWarning: invalid value encountered in divide\n", + ":89: RuntimeWarning: divide by zero encountered in divide\n", + ":89: RuntimeWarning: invalid value encountered in divide\n" + ] + }, + { + "name": "stdout", + "output_type": "stream", + "text": [ + "N_contact_pairs = 923\n", + "N_noncontact_cell_pairs = 923\n", + "N_contact_pairs = 923\n", + "N_noncontact_cell_pairs = 923\n", + "Microglia NN OB Meis2 Thsd7b Gaba\n" + ] + }, + { + "name": "stderr", + "output_type": "stream", + "text": [ + ":89: RuntimeWarning: divide by zero encountered in divide\n", + ":89: RuntimeWarning: invalid value encountered in divide\n" + ] + }, + { + "name": "stdout", + "output_type": "stream", + "text": [ + "N_contact_pairs = 3590\n", + "N_noncontact_cell_pairs = 3590\n" + ] + }, + { + "name": "stderr", + "output_type": "stream", + "text": [ + ":89: RuntimeWarning: divide by zero encountered in divide\n", + ":89: RuntimeWarning: invalid value encountered in divide\n" + ] + }, + { + "name": "stdout", + "output_type": "stream", + "text": [ + "N_contact_pairs = 3590\n", + "N_noncontact_cell_pairs = 3590\n", + "Microglia NN Oligo NN\n" + ] + }, + { + "name": "stderr", + "output_type": "stream", + "text": [ + ":89: RuntimeWarning: divide by zero encountered in divide\n", + ":89: RuntimeWarning: invalid value encountered in divide\n" + ] + }, + { + "name": "stdout", + "output_type": "stream", + "text": [ + "N_contact_pairs = 4707\n", + "N_noncontact_cell_pairs = 4707\n" + ] + }, + { + "name": "stderr", + "output_type": "stream", + "text": [ + ":89: RuntimeWarning: divide by zero encountered in divide\n", + ":89: RuntimeWarning: invalid value encountered in divide\n" + ] + }, + { + "name": "stdout", + "output_type": "stream", + "text": [ + "N_contact_pairs = 4707\n", + "N_noncontact_cell_pairs = 4707\n" + ] + }, + { + "name": "stderr", + "output_type": "stream", + "text": [ + ":89: RuntimeWarning: divide by zero encountered in divide\n", + ":89: RuntimeWarning: invalid value encountered in divide\n", + ":89: RuntimeWarning: divide by zero encountered in divide\n", + ":89: RuntimeWarning: invalid value encountered in divide\n", + ":89: RuntimeWarning: divide by zero encountered in divide\n", + ":89: RuntimeWarning: invalid value encountered in divide\n" + ] + }, + { + "name": "stdout", + "output_type": "stream", + "text": [ + "Lymphoid NN SMC NN\n", + "N_contact_pairs = 60\n", + "N_noncontact_cell_pairs = 60\n", + "N_contact_pairs = 60\n", + "N_noncontact_cell_pairs = 60\n", + "Microglia NN Peri NN\n", + "N_contact_pairs = 1606\n", + "N_noncontact_cell_pairs = 1606\n" + ] + }, + { + "name": "stderr", + "output_type": "stream", + "text": [ + ":89: RuntimeWarning: divide by zero encountered in divide\n", + ":89: RuntimeWarning: invalid value encountered in divide\n" + ] + }, + { + "name": "stdout", + "output_type": "stream", + "text": [ + "N_contact_pairs = 1606\n", + "N_noncontact_cell_pairs = 1606\n", + "Endo NN OB Dopa-Gaba\n" + ] + }, + { + "name": "stderr", + "output_type": "stream", + "text": [ + ":89: RuntimeWarning: divide by zero encountered in divide\n", + ":89: RuntimeWarning: invalid value encountered in divide\n" + ] + }, + { + "name": "stdout", + "output_type": "stream", + "text": [ + "N_contact_pairs = 15268\n", + "N_noncontact_cell_pairs = 15268\n" + ] + }, + { + "name": "stderr", + "output_type": "stream", + "text": [ + ":89: RuntimeWarning: divide by zero encountered in divide\n", + ":89: RuntimeWarning: invalid value encountered in divide\n" + ] + }, + { + "name": "stdout", + "output_type": "stream", + "text": [ + "N_contact_pairs = 15268\n", + "N_noncontact_cell_pairs = 15268\n" + ] + }, + { + "name": "stderr", + "output_type": "stream", + "text": [ + ":89: RuntimeWarning: divide by zero encountered in divide\n", + ":89: RuntimeWarning: invalid value encountered in divide\n" + ] + }, + { + "name": "stdout", + "output_type": "stream", + "text": [ + "OEC NN Oligo NN\n", + "N_contact_pairs = 852\n", + "N_noncontact_cell_pairs = 852\n" + ] + }, + { + "name": "stderr", + "output_type": "stream", + "text": [ + ":89: RuntimeWarning: divide by zero encountered in divide\n", + ":89: RuntimeWarning: invalid value encountered in divide\n" + ] + }, + { + "name": "stdout", + "output_type": "stream", + "text": [ + "N_contact_pairs = 852\n", + "N_noncontact_cell_pairs = 852\n", + "NDB-SI-ant Prdm12 Gaba NDB-SI-ant Prdm12 Gaba\n", + "N_contact_pairs = 303\n", + "N_noncontact_cell_pairs = 303\n", + "OB-STR-CTX Inh IMN Oligo NN\n" + ] + }, + { + "name": "stderr", + "output_type": "stream", + "text": [ + ":89: RuntimeWarning: divide by zero encountered in divide\n", + ":89: RuntimeWarning: invalid value encountered in divide\n", + ":89: RuntimeWarning: divide by zero encountered in divide\n", + ":89: RuntimeWarning: invalid value encountered in divide\n" + ] + }, + { + "name": "stdout", + "output_type": "stream", + "text": [ + "N_contact_pairs = 10803\n", + "N_noncontact_cell_pairs = 10803\n" + ] + }, + { + "name": "stderr", + "output_type": "stream", + "text": [ + ":89: RuntimeWarning: divide by zero encountered in divide\n", + ":89: RuntimeWarning: invalid value encountered in divide\n" + ] + }, + { + "name": "stdout", + "output_type": "stream", + "text": [ + "N_contact_pairs = 10803\n", + "N_noncontact_cell_pairs = 10803\n" + ] + }, + { + "name": "stderr", + "output_type": "stream", + "text": [ + ":89: RuntimeWarning: divide by zero encountered in divide\n", + ":89: RuntimeWarning: invalid value encountered in divide\n" + ] + }, + { + "name": "stdout", + "output_type": "stream", + "text": [ + "OB Meis2 Thsd7b Gaba OB-STR-CTX Inh IMN\n", + "N_contact_pairs = 1090\n", + "N_noncontact_cell_pairs = 1090\n" + ] + }, + { + "name": "stderr", + "output_type": "stream", + "text": [ + ":89: RuntimeWarning: divide by zero encountered in divide\n", + ":89: RuntimeWarning: invalid value encountered in divide\n" + ] + }, + { + "name": "stdout", + "output_type": "stream", + "text": [ + "N_contact_pairs = 1090\n", + "N_noncontact_cell_pairs = 1090\n", + "Endo NN Oligo NN\n" + ] + }, + { + "name": "stderr", + "output_type": "stream", + "text": [ + ":89: RuntimeWarning: divide by zero encountered in divide\n", + ":89: RuntimeWarning: invalid value encountered in divide\n" + ] + }, + { + "name": "stdout", + "output_type": "stream", + "text": [ + "N_contact_pairs = 9728\n", + "N_noncontact_cell_pairs = 9728\n" + ] + }, + { + "name": "stderr", + "output_type": "stream", + "text": [ + ":89: RuntimeWarning: divide by zero encountered in divide\n", + ":89: RuntimeWarning: invalid value encountered in divide\n" + ] + }, + { + "name": "stdout", + "output_type": "stream", + "text": [ + "N_contact_pairs = 9728\n", + "N_noncontact_cell_pairs = 9728\n" + ] + }, + { + "name": "stderr", + "output_type": "stream", + "text": [ + ":89: RuntimeWarning: divide by zero encountered in divide\n", + ":89: RuntimeWarning: invalid value encountered in divide\n", + ":89: RuntimeWarning: divide by zero encountered in divide\n", + ":89: RuntimeWarning: invalid value encountered in divide\n" + ] + }, + { + "name": "stdout", + "output_type": "stream", + "text": [ + "NLOT Rho Glut NLOT Rho Glut\n", + "N_contact_pairs = 938\n", + "N_noncontact_cell_pairs = 938\n", + "ABC NN Endo NN\n", + "N_contact_pairs = 807\n", + "N_noncontact_cell_pairs = 807\n" + ] + }, + { + "name": "stderr", + "output_type": "stream", + "text": [ + ":89: RuntimeWarning: divide by zero encountered in divide\n", + ":89: RuntimeWarning: invalid value encountered in divide\n" + ] + }, + { + "name": "stdout", + "output_type": "stream", + "text": [ + "N_contact_pairs = 807\n", + "N_noncontact_cell_pairs = 807\n", + "COAa-PAA-MEA Barhl2 Glut COAa-PAA-MEA Barhl2 Glut\n" + ] + }, + { + "name": "stderr", + "output_type": "stream", + "text": [ + ":89: RuntimeWarning: divide by zero encountered in divide\n", + ":89: RuntimeWarning: invalid value encountered in divide\n", + ":89: RuntimeWarning: divide by zero encountered in divide\n", + ":89: RuntimeWarning: invalid value encountered in divide\n" + ] + }, + { + "name": "stdout", + "output_type": "stream", + "text": [ + "N_contact_pairs = 767\n", + "N_noncontact_cell_pairs = 767\n", + "OB Dopa-Gaba Peri NN\n", + "N_contact_pairs = 1718\n", + "N_noncontact_cell_pairs = 1718\n" + ] + }, + { + "name": "stderr", + "output_type": "stream", + "text": [ + ":89: RuntimeWarning: divide by zero encountered in divide\n", + ":89: RuntimeWarning: invalid value encountered in divide\n" + ] + }, + { + "name": "stdout", + "output_type": "stream", + "text": [ + "N_contact_pairs = 1718\n", + "N_noncontact_cell_pairs = 1718\n", + "OB-out Frmd7 Gaba OPC NN\n" + ] + }, + { + "name": "stderr", + "output_type": "stream", + "text": [ + ":89: RuntimeWarning: divide by zero encountered in divide\n", + ":89: RuntimeWarning: invalid value encountered in divide\n" + ] + }, + { + "name": "stdout", + "output_type": "stream", + "text": [ + "N_contact_pairs = 4565\n", + "N_noncontact_cell_pairs = 4565\n" + ] + }, + { + "name": "stderr", + "output_type": "stream", + "text": [ + ":89: RuntimeWarning: divide by zero encountered in divide\n", + ":89: RuntimeWarning: invalid value encountered in divide\n" + ] + }, + { + "name": "stdout", + "output_type": "stream", + "text": [ + "N_contact_pairs = 4565\n", + "N_noncontact_cell_pairs = 4565\n" + ] + }, + { + "name": "stderr", + "output_type": "stream", + "text": [ + ":89: RuntimeWarning: divide by zero encountered in divide\n", + ":89: RuntimeWarning: invalid value encountered in divide\n", + ":89: RuntimeWarning: divide by zero encountered in divide\n", + ":89: RuntimeWarning: invalid value encountered in divide\n" + ] + }, + { + "name": "stdout", + "output_type": "stream", + "text": [ + "BAM NN Peri NN\n", + "N_contact_pairs = 149\n", + "N_noncontact_cell_pairs = 149\n", + "N_contact_pairs = 149\n", + "N_noncontact_cell_pairs = 149\n", + "Microglia NN VLMC NN\n" + ] + }, + { + "name": "stderr", + "output_type": "stream", + "text": [ + ":89: RuntimeWarning: divide by zero encountered in divide\n", + ":89: RuntimeWarning: invalid value encountered in divide\n" + ] + }, + { + "name": "stdout", + "output_type": "stream", + "text": [ + "N_contact_pairs = 1103\n", + "N_noncontact_cell_pairs = 1103\n" + ] + }, + { + "name": "stderr", + "output_type": "stream", + "text": [ + ":89: RuntimeWarning: divide by zero encountered in divide\n", + ":89: RuntimeWarning: invalid value encountered in divide\n" + ] + }, + { + "name": "stdout", + "output_type": "stream", + "text": [ + "N_contact_pairs = 1103\n", + "N_noncontact_cell_pairs = 1103\n", + "Oligo NN Peri NN\n" + ] + }, + { + "name": "stderr", + "output_type": "stream", + "text": [ + ":89: RuntimeWarning: divide by zero encountered in divide\n", + ":89: RuntimeWarning: invalid value encountered in divide\n" + ] + }, + { + "name": "stdout", + "output_type": "stream", + "text": [ + "N_contact_pairs = 1461\n", + "N_noncontact_cell_pairs = 1461\n" + ] + }, + { + "name": "stderr", + "output_type": "stream", + "text": [ + ":89: RuntimeWarning: divide by zero encountered in divide\n", + ":89: RuntimeWarning: invalid value encountered in divide\n" + ] + }, + { + "name": "stdout", + "output_type": "stream", + "text": [ + "N_contact_pairs = 1461\n", + "N_noncontact_cell_pairs = 1461\n", + "Lymphoid NN Peri NN\n", + "N_contact_pairs = 60\n", + "N_noncontact_cell_pairs = 60\n" + ] + }, + { + "name": "stderr", + "output_type": "stream", + "text": [ + ":89: RuntimeWarning: divide by zero encountered in divide\n", + ":89: RuntimeWarning: invalid value encountered in divide\n", + ":89: RuntimeWarning: divide by zero encountered in divide\n", + ":89: RuntimeWarning: invalid value encountered in divide\n" + ] + }, + { + "name": "stdout", + "output_type": "stream", + "text": [ + "N_contact_pairs = 60\n", + "N_noncontact_cell_pairs = 60\n", + "Endo NN OPC NN\n" + ] + }, + { + "name": "stderr", + "output_type": "stream", + "text": [ + ":89: RuntimeWarning: divide by zero encountered in divide\n", + ":89: RuntimeWarning: invalid value encountered in divide\n" + ] + }, + { + "name": "stdout", + "output_type": "stream", + "text": [ + "N_contact_pairs = 7220\n", + "N_noncontact_cell_pairs = 7220\n" + ] + }, + { + "name": "stderr", + "output_type": "stream", + "text": [ + ":89: RuntimeWarning: divide by zero encountered in divide\n", + ":89: RuntimeWarning: invalid value encountered in divide\n" + ] + }, + { + "name": "stdout", + "output_type": "stream", + "text": [ + "N_contact_pairs = 7220\n", + "N_noncontact_cell_pairs = 7220\n" + ] + }, + { + "name": "stderr", + "output_type": "stream", + "text": [ + ":89: RuntimeWarning: divide by zero encountered in divide\n", + ":89: RuntimeWarning: invalid value encountered in divide\n" + ] + }, + { + "name": "stdout", + "output_type": "stream", + "text": [ + "Lymphoid NN OEC NN\n", + "N_contact_pairs = 243\n", + "N_noncontact_cell_pairs = 243\n" + ] + }, + { + "name": "stderr", + "output_type": "stream", + "text": [ + ":89: RuntimeWarning: divide by zero encountered in divide\n", + ":89: RuntimeWarning: invalid value encountered in divide\n", + ":89: RuntimeWarning: divide by zero encountered in divide\n", + ":89: RuntimeWarning: invalid value encountered in divide\n" + ] + }, + { + "name": "stdout", + "output_type": "stream", + "text": [ + "N_contact_pairs = 243\n", + "N_noncontact_cell_pairs = 243\n", + "Astro-OLF NN Peri NN\n", + "N_contact_pairs = 1280\n", + "N_noncontact_cell_pairs = 1280\n" + ] + }, + { + "name": "stderr", + "output_type": "stream", + "text": [ + ":89: RuntimeWarning: divide by zero encountered in divide\n", + ":89: RuntimeWarning: invalid value encountered in divide\n" + ] + }, + { + "name": "stdout", + "output_type": "stream", + "text": [ + "N_contact_pairs = 1280\n", + "N_noncontact_cell_pairs = 1280\n", + "Microglia NN OB-STR-CTX Inh IMN\n" + ] + }, + { + "name": "stderr", + "output_type": "stream", + "text": [ + ":89: RuntimeWarning: divide by zero encountered in divide\n", + ":89: RuntimeWarning: invalid value encountered in divide\n" + ] + }, + { + "name": "stdout", + "output_type": "stream", + "text": [ + "N_contact_pairs = 3840\n", + "N_noncontact_cell_pairs = 3840\n" + ] + }, + { + "name": "stderr", + "output_type": "stream", + "text": [ + ":89: RuntimeWarning: divide by zero encountered in divide\n", + ":89: RuntimeWarning: invalid value encountered in divide\n" + ] + }, + { + "name": "stdout", + "output_type": "stream", + "text": [ + "N_contact_pairs = 3840\n", + "N_noncontact_cell_pairs = 3840\n", + "OPC NN Oligo NN\n" + ] + }, + { + "name": "stderr", + "output_type": "stream", + "text": [ + ":89: RuntimeWarning: divide by zero encountered in divide\n", + ":89: RuntimeWarning: invalid value encountered in divide\n" + ] + }, + { + "name": "stdout", + "output_type": "stream", + "text": [ + "N_contact_pairs = 3054\n", + "N_noncontact_cell_pairs = 3054\n" + ] + }, + { + "name": "stderr", + "output_type": "stream", + "text": [ + ":89: RuntimeWarning: divide by zero encountered in divide\n", + ":89: RuntimeWarning: invalid value encountered in divide\n" + ] + }, + { + "name": "stdout", + "output_type": "stream", + "text": [ + "N_contact_pairs = 3054\n", + "N_noncontact_cell_pairs = 3054\n", + "Lymphoid NN Microglia NN\n" + ] + }, + { + "name": "stderr", + "output_type": "stream", + "text": [ + ":89: RuntimeWarning: divide by zero encountered in divide\n", + ":89: RuntimeWarning: invalid value encountered in divide\n" + ] + }, + { + "name": "stdout", + "output_type": "stream", + "text": [ + "N_contact_pairs = 116\n", + "N_noncontact_cell_pairs = 116\n" + ] + }, + { + "name": "stderr", + "output_type": "stream", + "text": [ + ":89: RuntimeWarning: divide by zero encountered in divide\n", + ":89: RuntimeWarning: invalid value encountered in divide\n" + ] + }, + { + "name": "stdout", + "output_type": "stream", + "text": [ + "N_contact_pairs = 116\n", + "N_noncontact_cell_pairs = 116\n", + "Endo NN OEC NN\n" + ] + }, + { + "name": "stderr", + "output_type": "stream", + "text": [ + ":89: RuntimeWarning: divide by zero encountered in divide\n", + ":89: RuntimeWarning: invalid value encountered in divide\n" + ] + }, + { + "name": "stdout", + "output_type": "stream", + "text": [ + "N_contact_pairs = 9298\n", + "N_noncontact_cell_pairs = 9298\n" + ] + }, + { + "name": "stderr", + "output_type": "stream", + "text": [ + ":89: RuntimeWarning: divide by zero encountered in divide\n", + ":89: RuntimeWarning: invalid value encountered in divide\n" + ] + }, + { + "name": "stdout", + "output_type": "stream", + "text": [ + "N_contact_pairs = 9298\n", + "N_noncontact_cell_pairs = 9298\n" + ] + }, + { + "name": "stderr", + "output_type": "stream", + "text": [ + ":89: RuntimeWarning: divide by zero encountered in divide\n", + ":89: RuntimeWarning: invalid value encountered in divide\n" + ] + }, + { + "name": "stdout", + "output_type": "stream", + "text": [ + "Endo NN OB-STR-CTX Inh IMN\n", + "N_contact_pairs = 4390\n", + "N_noncontact_cell_pairs = 4390\n" + ] + }, + { + "name": "stderr", + "output_type": "stream", + "text": [ + ":89: RuntimeWarning: divide by zero encountered in divide\n", + ":89: RuntimeWarning: invalid value encountered in divide\n" + ] + }, + { + "name": "stdout", + "output_type": "stream", + "text": [ + "N_contact_pairs = 4390\n", + "N_noncontact_cell_pairs = 4390\n" + ] + }, + { + "name": "stderr", + "output_type": "stream", + "text": [ + ":89: RuntimeWarning: divide by zero encountered in divide\n", + ":89: RuntimeWarning: invalid value encountered in divide\n" + ] + }, + { + "name": "stdout", + "output_type": "stream", + "text": [ + "Endo NN Lymphoid NN\n", + "N_contact_pairs = 296\n", + "N_noncontact_cell_pairs = 296\n" + ] + }, + { + "name": "stderr", + "output_type": "stream", + "text": [ + ":89: RuntimeWarning: divide by zero encountered in divide\n", + ":89: RuntimeWarning: invalid value encountered in divide\n" + ] + }, + { + "name": "stdout", + "output_type": "stream", + "text": [ + "N_contact_pairs = 296\n", + "N_noncontact_cell_pairs = 296\n", + "Microglia NN SMC NN\n" + ] + }, + { + "name": "stderr", + "output_type": "stream", + "text": [ + ":89: RuntimeWarning: divide by zero encountered in divide\n", + ":89: RuntimeWarning: invalid value encountered in divide\n" + ] + }, + { + "name": "stdout", + "output_type": "stream", + "text": [ + "N_contact_pairs = 523\n", + "N_noncontact_cell_pairs = 523\n" + ] + }, + { + "name": "stderr", + "output_type": "stream", + "text": [ + ":89: RuntimeWarning: divide by zero encountered in divide\n", + ":89: RuntimeWarning: invalid value encountered in divide\n" + ] + }, + { + "name": "stdout", + "output_type": "stream", + "text": [ + "N_contact_pairs = 523\n", + "N_noncontact_cell_pairs = 523\n", + "Ependymal NN OB-STR-CTX Inh IMN\n", + "N_contact_pairs = 186\n", + "N_noncontact_cell_pairs = 186\n" + ] + }, + { + "name": "stderr", + "output_type": "stream", + "text": [ + ":89: RuntimeWarning: divide by zero encountered in divide\n", + ":89: RuntimeWarning: invalid value encountered in divide\n", + ":89: RuntimeWarning: divide by zero encountered in divide\n", + ":89: RuntimeWarning: invalid value encountered in divide\n" + ] + }, + { + "name": "stdout", + "output_type": "stream", + "text": [ + "N_contact_pairs = 186\n", + "N_noncontact_cell_pairs = 186\n", + "Oligo NN VLMC NN\n" + ] + }, + { + "name": "stderr", + "output_type": "stream", + "text": [ + ":89: RuntimeWarning: divide by zero encountered in divide\n", + ":89: RuntimeWarning: invalid value encountered in divide\n" + ] + }, + { + "name": "stdout", + "output_type": "stream", + "text": [ + "N_contact_pairs = 767\n", + "N_noncontact_cell_pairs = 767\n" + ] + }, + { + "name": "stderr", + "output_type": "stream", + "text": [ + ":89: RuntimeWarning: divide by zero encountered in divide\n", + ":89: RuntimeWarning: invalid value encountered in divide\n" + ] + }, + { + "name": "stdout", + "output_type": "stream", + "text": [ + "N_contact_pairs = 767\n", + "N_noncontact_cell_pairs = 767\n", + "BAM NN OB Dopa-Gaba\n" + ] + }, + { + "name": "stderr", + "output_type": "stream", + "text": [ + ":89: RuntimeWarning: divide by zero encountered in divide\n", + ":89: RuntimeWarning: invalid value encountered in divide\n" + ] + }, + { + "name": "stdout", + "output_type": "stream", + "text": [ + "N_contact_pairs = 635\n", + "N_noncontact_cell_pairs = 635\n" + ] + }, + { + "name": "stderr", + "output_type": "stream", + "text": [ + ":89: RuntimeWarning: divide by zero encountered in divide\n", + ":89: RuntimeWarning: invalid value encountered in divide\n" + ] + }, + { + "name": "stdout", + "output_type": "stream", + "text": [ + "N_contact_pairs = 635\n", + "N_noncontact_cell_pairs = 635\n", + "Microglia NN OPC NN\n" + ] + }, + { + "name": "stderr", + "output_type": "stream", + "text": [ + ":89: RuntimeWarning: divide by zero encountered in divide\n", + ":89: RuntimeWarning: invalid value encountered in divide\n" + ] + }, + { + "name": "stdout", + "output_type": "stream", + "text": [ + "N_contact_pairs = 2964\n", + "N_noncontact_cell_pairs = 2964\n" + ] + }, + { + "name": "stderr", + "output_type": "stream", + "text": [ + ":89: RuntimeWarning: divide by zero encountered in divide\n", + ":89: RuntimeWarning: invalid value encountered in divide\n" + ] + }, + { + "name": "stdout", + "output_type": "stream", + "text": [ + "N_contact_pairs = 2964\n", + "N_noncontact_cell_pairs = 2964\n", + "Astro-OLF NN SMC NN\n" + ] + }, + { + "name": "stderr", + "output_type": "stream", + "text": [ + ":89: RuntimeWarning: divide by zero encountered in divide\n", + ":89: RuntimeWarning: invalid value encountered in divide\n" + ] + }, + { + "name": "stdout", + "output_type": "stream", + "text": [ + "N_contact_pairs = 515\n", + "N_noncontact_cell_pairs = 515\n" + ] + }, + { + "name": "stderr", + "output_type": "stream", + "text": [ + ":89: RuntimeWarning: divide by zero encountered in divide\n", + ":89: RuntimeWarning: invalid value encountered in divide\n" + ] + }, + { + "name": "stdout", + "output_type": "stream", + "text": [ + "N_contact_pairs = 515\n", + "N_noncontact_cell_pairs = 515\n", + "DC NN OEC NN\n", + "N_contact_pairs = 66\n", + "N_noncontact_cell_pairs = 66\n" + ] + }, + { + "name": "stderr", + "output_type": "stream", + "text": [ + ":89: RuntimeWarning: divide by zero encountered in divide\n", + ":89: RuntimeWarning: invalid value encountered in divide\n", + ":89: RuntimeWarning: divide by zero encountered in divide\n", + ":89: RuntimeWarning: invalid value encountered in divide\n" + ] + }, + { + "name": "stdout", + "output_type": "stream", + "text": [ + "N_contact_pairs = 66\n", + "N_noncontact_cell_pairs = 66\n", + "OB Meis2 Thsd7b Gaba OPC NN\n" + ] + }, + { + "name": "stderr", + "output_type": "stream", + "text": [ + ":89: RuntimeWarning: divide by zero encountered in divide\n", + ":89: RuntimeWarning: invalid value encountered in divide\n" + ] + }, + { + "name": "stdout", + "output_type": "stream", + "text": [ + "N_contact_pairs = 2090\n", + "N_noncontact_cell_pairs = 2090\n" + ] + }, + { + "name": "stderr", + "output_type": "stream", + "text": [ + ":89: RuntimeWarning: divide by zero encountered in divide\n", + ":89: RuntimeWarning: invalid value encountered in divide\n" + ] + }, + { + "name": "stdout", + "output_type": "stream", + "text": [ + "N_contact_pairs = 2090\n", + "N_noncontact_cell_pairs = 2090\n", + "DC NN Endo NN\n" + ] + }, + { + "name": "stderr", + "output_type": "stream", + "text": [ + ":89: RuntimeWarning: divide by zero encountered in divide\n", + ":89: RuntimeWarning: invalid value encountered in divide\n" + ] + }, + { + "name": "stdout", + "output_type": "stream", + "text": [ + "N_contact_pairs = 70\n", + "N_noncontact_cell_pairs = 70\n" + ] + }, + { + "name": "stderr", + "output_type": "stream", + "text": [ + ":89: RuntimeWarning: divide by zero encountered in divide\n", + ":89: RuntimeWarning: invalid value encountered in divide\n" + ] + }, + { + "name": "stdout", + "output_type": "stream", + "text": [ + "N_contact_pairs = 70\n", + "N_noncontact_cell_pairs = 70\n", + "OB Eomes Ms4a15 Glut OB-STR-CTX Inh IMN\n" + ] + }, + { + "name": "stderr", + "output_type": "stream", + "text": [ + ":89: RuntimeWarning: divide by zero encountered in divide\n", + ":89: RuntimeWarning: invalid value encountered in divide\n" + ] + }, + { + "name": "stdout", + "output_type": "stream", + "text": [ + "N_contact_pairs = 1085\n", + "N_noncontact_cell_pairs = 1085\n" + ] + }, + { + "name": "stderr", + "output_type": "stream", + "text": [ + ":89: RuntimeWarning: divide by zero encountered in divide\n", + ":89: RuntimeWarning: invalid value encountered in divide\n" + ] + }, + { + "name": "stdout", + "output_type": "stream", + "text": [ + "N_contact_pairs = 1085\n", + "N_noncontact_cell_pairs = 1085\n", + "BAM NN Microglia NN\n" + ] + }, + { + "name": "stderr", + "output_type": "stream", + "text": [ + ":89: RuntimeWarning: divide by zero encountered in divide\n", + ":89: RuntimeWarning: invalid value encountered in divide\n" + ] + }, + { + "name": "stdout", + "output_type": "stream", + "text": [ + "N_contact_pairs = 295\n", + "N_noncontact_cell_pairs = 295\n" + ] + }, + { + "name": "stderr", + "output_type": "stream", + "text": [ + ":89: RuntimeWarning: divide by zero encountered in divide\n", + ":89: RuntimeWarning: invalid value encountered in divide\n" + ] + }, + { + "name": "stdout", + "output_type": "stream", + "text": [ + "N_contact_pairs = 295\n", + "N_noncontact_cell_pairs = 295\n", + "L2/3 IT PIR-ENTl Glut OB Eomes Ms4a15 Glut\n" + ] + }, + { + "name": "stderr", + "output_type": "stream", + "text": [ + ":89: RuntimeWarning: divide by zero encountered in divide\n", + ":89: RuntimeWarning: invalid value encountered in divide\n" + ] + }, + { + "name": "stdout", + "output_type": "stream", + "text": [ + "N_contact_pairs = 73\n", + "N_noncontact_cell_pairs = 73\n" + ] + }, + { + "name": "stderr", + "output_type": "stream", + "text": [ + ":89: RuntimeWarning: divide by zero encountered in divide\n", + ":89: RuntimeWarning: invalid value encountered in divide\n" + ] + }, + { + "name": "stdout", + "output_type": "stream", + "text": [ + "N_contact_pairs = 73\n", + "N_noncontact_cell_pairs = 73\n" + ] + }, + { + "name": "stderr", + "output_type": "stream", + "text": [ + ":89: RuntimeWarning: divide by zero encountered in divide\n", + ":89: RuntimeWarning: invalid value encountered in divide\n" + ] + }, + { + "name": "stdout", + "output_type": "stream", + "text": [ + "OB Meis2 Thsd7b Gaba Peri NN\n", + "N_contact_pairs = 1471\n", + "N_noncontact_cell_pairs = 1471\n" + ] + }, + { + "name": "stderr", + "output_type": "stream", + "text": [ + ":89: RuntimeWarning: divide by zero encountered in divide\n", + ":89: RuntimeWarning: invalid value encountered in divide\n" + ] + }, + { + "name": "stdout", + "output_type": "stream", + "text": [ + "N_contact_pairs = 1471\n", + "N_noncontact_cell_pairs = 1471\n", + "COAa-PAA-MEA Barhl2 Glut Oligo NN\n" + ] + }, + { + "name": "stderr", + "output_type": "stream", + "text": [ + ":89: RuntimeWarning: divide by zero encountered in divide\n", + ":89: RuntimeWarning: invalid value encountered in divide\n" + ] + }, + { + "name": "stdout", + "output_type": "stream", + "text": [ + "N_contact_pairs = 444\n", + "N_noncontact_cell_pairs = 444\n" + ] + }, + { + "name": "stderr", + "output_type": "stream", + "text": [ + ":89: RuntimeWarning: divide by zero encountered in divide\n", + ":89: RuntimeWarning: invalid value encountered in divide\n" + ] + }, + { + "name": "stdout", + "output_type": "stream", + "text": [ + "N_contact_pairs = 444\n", + "N_noncontact_cell_pairs = 444\n", + "Endo NN NDB-SI-ant Prdm12 Gaba\n" + ] + }, + { + "name": "stderr", + "output_type": "stream", + "text": [ + ":89: RuntimeWarning: divide by zero encountered in divide\n", + ":89: RuntimeWarning: invalid value encountered in divide\n" + ] + }, + { + "name": "stdout", + "output_type": "stream", + "text": [ + "N_contact_pairs = 679\n", + "N_noncontact_cell_pairs = 679\n" + ] + }, + { + "name": "stderr", + "output_type": "stream", + "text": [ + ":89: RuntimeWarning: divide by zero encountered in divide\n", + ":89: RuntimeWarning: invalid value encountered in divide\n" + ] + }, + { + "name": "stdout", + "output_type": "stream", + "text": [ + "N_contact_pairs = 679\n", + "N_noncontact_cell_pairs = 679\n", + "Microglia NN OB Eomes Ms4a15 Glut\n" + ] + }, + { + "name": "stderr", + "output_type": "stream", + "text": [ + ":89: RuntimeWarning: divide by zero encountered in divide\n", + ":89: RuntimeWarning: invalid value encountered in divide\n" + ] + }, + { + "name": "stdout", + "output_type": "stream", + "text": [ + "N_contact_pairs = 3909\n", + "N_noncontact_cell_pairs = 3909\n" + ] + }, + { + "name": "stderr", + "output_type": "stream", + "text": [ + ":89: RuntimeWarning: divide by zero encountered in divide\n", + ":89: RuntimeWarning: invalid value encountered in divide\n" + ] + }, + { + "name": "stdout", + "output_type": "stream", + "text": [ + "N_contact_pairs = 3909\n", + "N_noncontact_cell_pairs = 3909\n" + ] + }, + { + "name": "stderr", + "output_type": "stream", + "text": [ + ":89: RuntimeWarning: divide by zero encountered in divide\n", + ":89: RuntimeWarning: invalid value encountered in divide\n" + ] + }, + { + "name": "stdout", + "output_type": "stream", + "text": [ + "Astro-OLF NN OPC NN\n", + "N_contact_pairs = 2020\n", + "N_noncontact_cell_pairs = 2020\n" + ] + }, + { + "name": "stderr", + "output_type": "stream", + "text": [ + ":89: RuntimeWarning: divide by zero encountered in divide\n", + ":89: RuntimeWarning: invalid value encountered in divide\n" + ] + }, + { + "name": "stdout", + "output_type": "stream", + "text": [ + "N_contact_pairs = 2020\n", + "N_noncontact_cell_pairs = 2020\n", + "IA Mgp Gaba OB-in Frmd7 Gaba\n" + ] + }, + { + "name": "stderr", + "output_type": "stream", + "text": [ + ":89: RuntimeWarning: divide by zero encountered in divide\n", + ":89: RuntimeWarning: invalid value encountered in divide\n" + ] + }, + { + "name": "stdout", + "output_type": "stream", + "text": [ + "N_contact_pairs = 3610\n", + "N_noncontact_cell_pairs = 3610\n" + ] + }, + { + "name": "stderr", + "output_type": "stream", + "text": [ + ":89: RuntimeWarning: divide by zero encountered in divide\n", + ":89: RuntimeWarning: invalid value encountered in divide\n" + ] + }, + { + "name": "stdout", + "output_type": "stream", + "text": [ + "N_contact_pairs = 3610\n", + "N_noncontact_cell_pairs = 3610\n" + ] + }, + { + "name": "stderr", + "output_type": "stream", + "text": [ + ":89: RuntimeWarning: divide by zero encountered in divide\n", + ":89: RuntimeWarning: invalid value encountered in divide\n" + ] + }, + { + "name": "stdout", + "output_type": "stream", + "text": [ + "OPC NN Peri NN\n", + "N_contact_pairs = 986\n", + "N_noncontact_cell_pairs = 986\n" + ] + }, + { + "name": "stderr", + "output_type": "stream", + "text": [ + ":89: RuntimeWarning: divide by zero encountered in divide\n", + ":89: RuntimeWarning: invalid value encountered in divide\n" + ] + }, + { + "name": "stdout", + "output_type": "stream", + "text": [ + "N_contact_pairs = 986\n", + "N_noncontact_cell_pairs = 986\n", + "IA Mgp Gaba OB Trdn Gaba\n", + "N_contact_pairs = 433\n", + "N_noncontact_cell_pairs = 433\n" + ] + }, + { + "name": "stderr", + "output_type": "stream", + "text": [ + ":89: RuntimeWarning: divide by zero encountered in divide\n", + ":89: RuntimeWarning: invalid value encountered in divide\n", + ":89: RuntimeWarning: divide by zero encountered in divide\n", + ":89: RuntimeWarning: invalid value encountered in divide\n" + ] + }, + { + "name": "stdout", + "output_type": "stream", + "text": [ + "N_contact_pairs = 433\n", + "N_noncontact_cell_pairs = 433\n", + "COAa-PAA-MEA Barhl2 Glut Microglia NN\n" + ] + }, + { + "name": "stderr", + "output_type": "stream", + "text": [ + ":89: RuntimeWarning: divide by zero encountered in divide\n", + ":89: RuntimeWarning: invalid value encountered in divide\n" + ] + }, + { + "name": "stdout", + "output_type": "stream", + "text": [ + "N_contact_pairs = 504\n", + "N_noncontact_cell_pairs = 504\n" + ] + }, + { + "name": "stderr", + "output_type": "stream", + "text": [ + ":89: RuntimeWarning: divide by zero encountered in divide\n", + ":89: RuntimeWarning: invalid value encountered in divide\n" + ] + }, + { + "name": "stdout", + "output_type": "stream", + "text": [ + "N_contact_pairs = 504\n", + "N_noncontact_cell_pairs = 504\n", + "BAM NN OB-STR-CTX Inh IMN\n" + ] + }, + { + "name": "stderr", + "output_type": "stream", + "text": [ + ":89: RuntimeWarning: divide by zero encountered in divide\n", + ":89: RuntimeWarning: invalid value encountered in divide\n" + ] + }, + { + "name": "stdout", + "output_type": "stream", + "text": [ + "N_contact_pairs = 127\n", + "N_noncontact_cell_pairs = 127\n", + "N_contact_pairs = 127\n", + "N_noncontact_cell_pairs = 127\n" + ] + }, + { + "name": "stderr", + "output_type": "stream", + "text": [ + ":89: RuntimeWarning: divide by zero encountered in divide\n", + ":89: RuntimeWarning: invalid value encountered in divide\n", + ":89: RuntimeWarning: divide by zero encountered in divide\n", + ":89: RuntimeWarning: invalid value encountered in divide\n" + ] + }, + { + "name": "stdout", + "output_type": "stream", + "text": [ + "OEC NN Peri NN\n", + "N_contact_pairs = 1052\n", + "N_noncontact_cell_pairs = 1052\n" + ] + }, + { + "name": "stderr", + "output_type": "stream", + "text": [ + ":89: RuntimeWarning: divide by zero encountered in divide\n", + ":89: RuntimeWarning: invalid value encountered in divide\n" + ] + }, + { + "name": "stdout", + "output_type": "stream", + "text": [ + "N_contact_pairs = 1052\n", + "N_noncontact_cell_pairs = 1052\n", + "NDB-SI-ant Prdm12 Gaba Oligo NN\n" + ] + }, + { + "name": "stderr", + "output_type": "stream", + "text": [ + ":89: RuntimeWarning: divide by zero encountered in divide\n", + ":89: RuntimeWarning: invalid value encountered in divide\n" + ] + }, + { + "name": "stdout", + "output_type": "stream", + "text": [ + "N_contact_pairs = 518\n", + "N_noncontact_cell_pairs = 518\n" + ] + }, + { + "name": "stderr", + "output_type": "stream", + "text": [ + ":89: RuntimeWarning: divide by zero encountered in divide\n", + ":89: RuntimeWarning: invalid value encountered in divide\n" + ] + }, + { + "name": "stdout", + "output_type": "stream", + "text": [ + "N_contact_pairs = 518\n", + "N_noncontact_cell_pairs = 518\n", + "Microglia NN NDB-SI-ant Prdm12 Gaba\n" + ] + }, + { + "name": "stderr", + "output_type": "stream", + "text": [ + ":89: RuntimeWarning: divide by zero encountered in divide\n", + ":89: RuntimeWarning: invalid value encountered in divide\n" + ] + }, + { + "name": "stdout", + "output_type": "stream", + "text": [ + "N_contact_pairs = 267\n", + "N_noncontact_cell_pairs = 267\n", + "N_contact_pairs = 267\n", + "N_noncontact_cell_pairs = 267\n" + ] + }, + { + "name": "stderr", + "output_type": "stream", + "text": [ + ":89: RuntimeWarning: divide by zero encountered in divide\n", + ":89: RuntimeWarning: invalid value encountered in divide\n", + ":89: RuntimeWarning: divide by zero encountered in divide\n", + ":89: RuntimeWarning: invalid value encountered in divide\n" + ] + }, + { + "name": "stdout", + "output_type": "stream", + "text": [ + "OB Eomes Ms4a15 Glut OB-in Frmd7 Gaba\n", + "N_contact_pairs = 47863\n", + "N_noncontact_cell_pairs = 47863\n" + ] + }, + { + "name": "stderr", + "output_type": "stream", + "text": [ + ":89: RuntimeWarning: divide by zero encountered in divide\n", + ":89: RuntimeWarning: invalid value encountered in divide\n" + ] + }, + { + "name": "stdout", + "output_type": "stream", + "text": [ + "N_contact_pairs = 47863\n", + "N_noncontact_cell_pairs = 47863\n" + ] + }, + { + "name": "stderr", + "output_type": "stream", + "text": [ + ":89: RuntimeWarning: divide by zero encountered in divide\n", + ":89: RuntimeWarning: invalid value encountered in divide\n" + ] + }, + { + "name": "stdout", + "output_type": "stream", + "text": [ + "ABC NN Microglia NN\n", + "N_contact_pairs = 168\n", + "N_noncontact_cell_pairs = 168\n" + ] + }, + { + "name": "stderr", + "output_type": "stream", + "text": [ + ":89: RuntimeWarning: divide by zero encountered in divide\n", + ":89: RuntimeWarning: invalid value encountered in divide\n" + ] + }, + { + "name": "stdout", + "output_type": "stream", + "text": [ + "N_contact_pairs = 168\n", + "N_noncontact_cell_pairs = 168\n", + "OB Meis2 Thsd7b Gaba Oligo NN\n" + ] + }, + { + "name": "stderr", + "output_type": "stream", + "text": [ + ":89: RuntimeWarning: divide by zero encountered in divide\n", + ":89: RuntimeWarning: invalid value encountered in divide\n" + ] + }, + { + "name": "stdout", + "output_type": "stream", + "text": [ + "N_contact_pairs = 1846\n", + "N_noncontact_cell_pairs = 1846\n" + ] + }, + { + "name": "stderr", + "output_type": "stream", + "text": [ + ":89: RuntimeWarning: divide by zero encountered in divide\n", + ":89: RuntimeWarning: invalid value encountered in divide\n" + ] + }, + { + "name": "stdout", + "output_type": "stream", + "text": [ + "N_contact_pairs = 1846\n", + "N_noncontact_cell_pairs = 1846\n" + ] + }, + { + "name": "stderr", + "output_type": "stream", + "text": [ + ":89: RuntimeWarning: divide by zero encountered in divide\n", + ":89: RuntimeWarning: invalid value encountered in divide\n" + ] + }, + { + "name": "stdout", + "output_type": "stream", + "text": [ + "Pallidum\n" + ] + }, + { + "name": "stderr", + "output_type": "stream", + "text": [ + ":25: ImplicitModificationWarning: Trying to modify attribute `.obs` of view, initializing view as actual.\n", + ":28: ImplicitModificationWarning: Trying to modify attribute `.obs` of view, initializing view as actual.\n" + ] + }, + { + "name": "stdout", + "output_type": "stream", + "text": [ + "OT D3 Folh1 Gaba OT D3 Folh1 Gaba\n", + "N_contact_pairs = 14922\n", + "N_noncontact_cell_pairs = 7140\n" + ] + }, + { + "name": "stderr", + "output_type": "stream", + "text": [ + ":89: RuntimeWarning: divide by zero encountered in divide\n", + ":89: RuntimeWarning: invalid value encountered in divide\n" + ] + }, + { + "name": "stdout", + "output_type": "stream", + "text": [ + "STR-PAL Chst9 Gaba STR-PAL Chst9 Gaba\n", + "N_contact_pairs = 5195\n", + "N_noncontact_cell_pairs = 5195\n", + "SMC NN SMC NN\n" + ] + }, + { + "name": "stderr", + "output_type": "stream", + "text": [ + ":89: RuntimeWarning: divide by zero encountered in divide\n", + ":89: RuntimeWarning: invalid value encountered in divide\n", + ":89: RuntimeWarning: divide by zero encountered in divide\n", + ":89: RuntimeWarning: invalid value encountered in divide\n" + ] + }, + { + "name": "stdout", + "output_type": "stream", + "text": [ + "N_contact_pairs = 620\n", + "N_noncontact_cell_pairs = 620\n", + "Oligo NN Oligo NN\n", + "N_contact_pairs = 28755\n", + "N_noncontact_cell_pairs = 28755\n" + ] + }, + { + "name": "stderr", + "output_type": "stream", + "text": [ + ":89: RuntimeWarning: divide by zero encountered in divide\n", + ":89: RuntimeWarning: invalid value encountered in divide\n" + ] + }, + { + "name": "stdout", + "output_type": "stream", + "text": [ + "VLMC NN VLMC NN\n", + "N_contact_pairs = 739\n", + "N_noncontact_cell_pairs = 739\n", + "Endo NN SMC NN\n", + "N_contact_pairs = 932\n", + "N_noncontact_cell_pairs = 932\n" + ] + }, + { + "name": "stderr", + "output_type": "stream", + "text": [ + ":89: RuntimeWarning: divide by zero encountered in divide\n", + ":89: RuntimeWarning: invalid value encountered in divide\n", + ":89: RuntimeWarning: divide by zero encountered in divide\n", + ":89: RuntimeWarning: invalid value encountered in divide\n" + ] + }, + { + "name": "stdout", + "output_type": "stream", + "text": [ + "N_contact_pairs = 932\n", + "N_noncontact_cell_pairs = 932\n", + "SMC NN VLMC NN\n", + "N_contact_pairs = 570\n", + "N_noncontact_cell_pairs = 570\n", + "N_contact_pairs = 570\n", + "N_noncontact_cell_pairs = 570\n", + "Ependymal NN Ependymal NN\n", + "N_contact_pairs = 412\n", + "N_noncontact_cell_pairs = 21\n", + "TRS-BAC Sln Glut TRS-BAC Sln Glut\n", + "N_contact_pairs = 8548\n", + "N_noncontact_cell_pairs = 8548\n" + ] + }, + { + "name": "stderr", + "output_type": "stream", + "text": [ + ":89: RuntimeWarning: divide by zero encountered in divide\n", + ":89: RuntimeWarning: invalid value encountered in divide\n", + ":89: RuntimeWarning: divide by zero encountered in divide\n", + ":89: RuntimeWarning: invalid value encountered in divide\n", + ":89: RuntimeWarning: divide by zero encountered in divide\n", + ":89: RuntimeWarning: invalid value encountered in divide\n", + ":89: RuntimeWarning: divide by zero encountered in divide\n", + ":89: RuntimeWarning: invalid value encountered in divide\n", + ":89: RuntimeWarning: divide by zero encountered in divide\n", + ":89: RuntimeWarning: invalid value encountered in divide\n", + ":89: RuntimeWarning: divide by zero encountered in divide\n", + ":89: RuntimeWarning: invalid value encountered in divide\n", + ":89: RuntimeWarning: divide by zero encountered in divide\n", + ":89: RuntimeWarning: invalid value encountered in divide\n" + ] + }, + { + "name": "stdout", + "output_type": "stream", + "text": [ + "BAM NN VLMC NN\n", + "N_contact_pairs = 295\n", + "N_noncontact_cell_pairs = 295\n", + "N_contact_pairs = 295\n", + "N_noncontact_cell_pairs = 295\n", + "Endo NN VLMC NN\n", + "N_contact_pairs = 837\n", + "N_noncontact_cell_pairs = 837\n" + ] + }, + { + "name": "stderr", + "output_type": "stream", + "text": [ + ":89: RuntimeWarning: divide by zero encountered in divide\n", + ":89: RuntimeWarning: invalid value encountered in divide\n", + ":89: RuntimeWarning: divide by zero encountered in divide\n", + ":89: RuntimeWarning: invalid value encountered in divide\n" + ] + }, + { + "name": "stdout", + "output_type": "stream", + "text": [ + "N_contact_pairs = 837\n", + "N_noncontact_cell_pairs = 837\n", + "Endo NN Peri NN\n", + "N_contact_pairs = 1307\n", + "N_noncontact_cell_pairs = 1307\n" + ] + }, + { + "name": "stderr", + "output_type": "stream", + "text": [ + ":89: RuntimeWarning: divide by zero encountered in divide\n", + ":89: RuntimeWarning: invalid value encountered in divide\n", + ":89: RuntimeWarning: divide by zero encountered in divide\n", + ":89: RuntimeWarning: invalid value encountered in divide\n" + ] + }, + { + "name": "stdout", + "output_type": "stream", + "text": [ + "N_contact_pairs = 1307\n", + "N_noncontact_cell_pairs = 1307\n", + "Endo NN Endo NN\n", + "N_contact_pairs = 3061\n", + "N_noncontact_cell_pairs = 3061\n" + ] + }, + { + "name": "stderr", + "output_type": "stream", + "text": [ + ":89: RuntimeWarning: divide by zero encountered in divide\n", + ":89: RuntimeWarning: invalid value encountered in divide\n", + ":89: RuntimeWarning: divide by zero encountered in divide\n", + ":89: RuntimeWarning: invalid value encountered in divide\n", + ":89: RuntimeWarning: divide by zero encountered in divide\n", + ":89: RuntimeWarning: invalid value encountered in divide\n" + ] + }, + { + "name": "stdout", + "output_type": "stream", + "text": [ + "STR D1 Sema5a Gaba STR D1 Sema5a Gaba\n", + "N_contact_pairs = 516\n", + "N_noncontact_cell_pairs = 516\n", + "BAM NN Endo NN\n", + "N_contact_pairs = 340\n", + "N_noncontact_cell_pairs = 340\n", + "N_contact_pairs = 340\n", + "N_noncontact_cell_pairs = 340\n" + ] + }, + { + "name": "stderr", + "output_type": "stream", + "text": [ + ":89: RuntimeWarning: divide by zero encountered in divide\n", + ":89: RuntimeWarning: invalid value encountered in divide\n", + ":89: RuntimeWarning: divide by zero encountered in divide\n", + ":89: RuntimeWarning: invalid value encountered in divide\n", + ":89: RuntimeWarning: divide by zero encountered in divide\n", + ":89: RuntimeWarning: invalid value encountered in divide\n", + ":89: RuntimeWarning: divide by zero encountered in divide\n", + ":89: RuntimeWarning: invalid value encountered in divide\n" + ] + }, + { + "name": "stdout", + "output_type": "stream", + "text": [ + "BAM NN SMC NN\n", + "N_contact_pairs = 124\n", + "N_noncontact_cell_pairs = 124\n", + "N_contact_pairs = 124\n", + "N_noncontact_cell_pairs = 124\n", + "BST-po Iigp1 Glut BST-po Iigp1 Glut\n", + "N_contact_pairs = 618\n", + "N_noncontact_cell_pairs = 10\n", + "NDB-SI-MA-STRv Lhx8 Gaba NDB-SI-MA-STRv Lhx8 Gaba\n", + "N_contact_pairs = 3384\n", + "N_noncontact_cell_pairs = 3384\n" + ] + }, + { + "name": "stderr", + "output_type": "stream", + "text": [ + ":89: RuntimeWarning: divide by zero encountered in divide\n", + ":89: RuntimeWarning: invalid value encountered in divide\n", + ":89: RuntimeWarning: divide by zero encountered in divide\n", + ":89: RuntimeWarning: invalid value encountered in divide\n" + ] + }, + { + "name": "stdout", + "output_type": "stream", + "text": [ + "BAM NN BAM NN\n", + "N_contact_pairs = 47\n", + "N_noncontact_cell_pairs = 47\n", + "Astro-NT NN Endo NN\n", + "N_contact_pairs = 6443\n", + "N_noncontact_cell_pairs = 6443\n" + ] + }, + { + "name": "stderr", + "output_type": "stream", + "text": [ + ":89: RuntimeWarning: divide by zero encountered in divide\n", + ":89: RuntimeWarning: invalid value encountered in divide\n" + ] + }, + { + "name": "stdout", + "output_type": "stream", + "text": [ + "N_contact_pairs = 6443\n", + "N_noncontact_cell_pairs = 6443\n" + ] + }, + { + "name": "stderr", + "output_type": "stream", + "text": [ + ":89: RuntimeWarning: divide by zero encountered in divide\n", + ":89: RuntimeWarning: invalid value encountered in divide\n", + ":89: RuntimeWarning: divide by zero encountered in divide\n", + ":89: RuntimeWarning: invalid value encountered in divide\n" + ] + }, + { + "name": "stdout", + "output_type": "stream", + "text": [ + "ACB-BST-FS D1 Gaba ACB-BST-FS D1 Gaba\n", + "N_contact_pairs = 759\n", + "N_noncontact_cell_pairs = 759\n", + "Microglia NN Oligo NN\n", + "N_contact_pairs = 6950\n", + "N_noncontact_cell_pairs = 6950\n" + ] + }, + { + "name": "stderr", + "output_type": "stream", + "text": [ + ":89: RuntimeWarning: divide by zero encountered in divide\n", + ":89: RuntimeWarning: invalid value encountered in divide\n" + ] + }, + { + "name": "stdout", + "output_type": "stream", + "text": [ + "N_contact_pairs = 6950\n", + "N_noncontact_cell_pairs = 6950\n" + ] + }, + { + "name": "stderr", + "output_type": "stream", + "text": [ + ":89: RuntimeWarning: divide by zero encountered in divide\n", + ":89: RuntimeWarning: invalid value encountered in divide\n", + ":89: RuntimeWarning: divide by zero encountered in divide\n", + ":89: RuntimeWarning: invalid value encountered in divide\n" + ] + }, + { + "name": "stdout", + "output_type": "stream", + "text": [ + "PAL-STR Gaba-Chol PAL-STR Gaba-Chol\n", + "N_contact_pairs = 192\n", + "N_noncontact_cell_pairs = 192\n", + "OPC NN Oligo NN\n", + "N_contact_pairs = 5104\n", + "N_noncontact_cell_pairs = 5104\n" + ] + }, + { + "name": "stderr", + "output_type": "stream", + "text": [ + ":89: RuntimeWarning: divide by zero encountered in divide\n", + ":89: RuntimeWarning: invalid value encountered in divide\n" + ] + }, + { + "name": "stdout", + "output_type": "stream", + "text": [ + "N_contact_pairs = 5104\n", + "N_noncontact_cell_pairs = 5104\n" + ] + }, + { + "name": "stderr", + "output_type": "stream", + "text": [ + ":89: RuntimeWarning: divide by zero encountered in divide\n", + ":89: RuntimeWarning: invalid value encountered in divide\n", + ":89: RuntimeWarning: divide by zero encountered in divide\n", + ":89: RuntimeWarning: invalid value encountered in divide\n", + ":89: RuntimeWarning: divide by zero encountered in divide\n", + ":89: RuntimeWarning: invalid value encountered in divide\n", + ":89: RuntimeWarning: divide by zero encountered in divide\n", + ":89: RuntimeWarning: invalid value encountered in divide\n", + ":89: RuntimeWarning: divide by zero encountered in divide\n", + ":89: RuntimeWarning: invalid value encountered in divide\n" + ] + }, + { + "name": "stdout", + "output_type": "stream", + "text": [ + "AVPV-MEPO-SFO Tbr1 Glut AVPV-MEPO-SFO Tbr1 Glut\n", + "N_contact_pairs = 93\n", + "N_noncontact_cell_pairs = 93\n", + "RT-ZI Gnb3 Gaba RT-ZI Gnb3 Gaba\n", + "N_contact_pairs = 153\n", + "N_noncontact_cell_pairs = 153\n", + "MEA-BST Lhx6 Nfib Gaba MEA-BST Lhx6 Nfib Gaba\n", + "N_contact_pairs = 1043\n", + "N_noncontact_cell_pairs = 1043\n", + "STR D1 Sema5a Gaba STR-PAL Chst9 Gaba\n", + "N_contact_pairs = 271\n", + "N_noncontact_cell_pairs = 271\n", + "N_contact_pairs = 271\n", + "N_noncontact_cell_pairs = 271\n", + "NDB-SI-ant Prdm12 Gaba NDB-SI-ant Prdm12 Gaba\n", + "N_contact_pairs = 74\n", + "N_noncontact_cell_pairs = 74\n", + "CEA-BST Ebf1 Pdyn Gaba CEA-BST Ebf1 Pdyn Gaba\n", + "N_contact_pairs = 700\n", + "N_noncontact_cell_pairs = 700\n", + "Astro-NT NN Oligo NN\n" + ] + }, + { + "name": "stderr", + "output_type": "stream", + "text": [ + ":89: RuntimeWarning: divide by zero encountered in divide\n", + ":89: RuntimeWarning: invalid value encountered in divide\n", + ":89: RuntimeWarning: divide by zero encountered in divide\n", + ":89: RuntimeWarning: invalid value encountered in divide\n", + ":89: RuntimeWarning: divide by zero encountered in divide\n", + ":89: RuntimeWarning: invalid value encountered in divide\n" + ] + }, + { + "name": "stdout", + "output_type": "stream", + "text": [ + "N_contact_pairs = 16374\n", + "N_noncontact_cell_pairs = 16374\n" + ] + }, + { + "name": "stderr", + "output_type": "stream", + "text": [ + ":89: RuntimeWarning: divide by zero encountered in divide\n", + ":89: RuntimeWarning: invalid value encountered in divide\n" + ] + }, + { + "name": "stdout", + "output_type": "stream", + "text": [ + "N_contact_pairs = 16374\n", + "N_noncontact_cell_pairs = 16374\n" + ] + }, + { + "name": "stderr", + "output_type": "stream", + "text": [ + ":89: RuntimeWarning: divide by zero encountered in divide\n", + ":89: RuntimeWarning: invalid value encountered in divide\n" + ] + }, + { + "name": "stdout", + "output_type": "stream", + "text": [ + "Endo NN Microglia NN\n", + "N_contact_pairs = 2428\n", + "N_noncontact_cell_pairs = 2428\n" + ] + }, + { + "name": "stderr", + "output_type": "stream", + "text": [ + ":89: RuntimeWarning: divide by zero encountered in divide\n", + ":89: RuntimeWarning: invalid value encountered in divide\n", + ":89: RuntimeWarning: divide by zero encountered in divide\n", + ":89: RuntimeWarning: invalid value encountered in divide\n" + ] + }, + { + "name": "stdout", + "output_type": "stream", + "text": [ + "N_contact_pairs = 2428\n", + "N_noncontact_cell_pairs = 2428\n", + "Endo NN Oligo NN\n", + "N_contact_pairs = 10956\n", + "N_noncontact_cell_pairs = 10956\n" + ] + }, + { + "name": "stderr", + "output_type": "stream", + "text": [ + ":89: RuntimeWarning: divide by zero encountered in divide\n", + ":89: RuntimeWarning: invalid value encountered in divide\n" + ] + }, + { + "name": "stdout", + "output_type": "stream", + "text": [ + "N_contact_pairs = 10956\n", + "N_noncontact_cell_pairs = 10956\n" + ] + }, + { + "name": "stderr", + "output_type": "stream", + "text": [ + ":89: RuntimeWarning: divide by zero encountered in divide\n", + ":89: RuntimeWarning: invalid value encountered in divide\n", + ":89: RuntimeWarning: divide by zero encountered in divide\n", + ":89: RuntimeWarning: invalid value encountered in divide\n", + ":89: RuntimeWarning: divide by zero encountered in divide\n", + ":89: RuntimeWarning: invalid value encountered in divide\n", + ":89: RuntimeWarning: divide by zero encountered in divide\n", + ":89: RuntimeWarning: invalid value encountered in divide\n" + ] + }, + { + "name": "stdout", + "output_type": "stream", + "text": [ + "Peri NN VLMC NN\n", + "N_contact_pairs = 95\n", + "N_noncontact_cell_pairs = 95\n", + "N_contact_pairs = 95\n", + "N_noncontact_cell_pairs = 95\n", + "LSX Prdm12 Slit2 Gaba LSX Prdm12 Slit2 Gaba\n", + "N_contact_pairs = 51\n", + "N_noncontact_cell_pairs = 51\n", + "Oligo NN RT-ZI Gnb3 Gaba\n", + "N_contact_pairs = 710\n", + "N_noncontact_cell_pairs = 710\n", + "N_contact_pairs = 710\n", + "N_noncontact_cell_pairs = 710\n" + ] + }, + { + "name": "stderr", + "output_type": "stream", + "text": [ + ":89: RuntimeWarning: divide by zero encountered in divide\n", + ":89: RuntimeWarning: invalid value encountered in divide\n", + ":89: RuntimeWarning: divide by zero encountered in divide\n", + ":89: RuntimeWarning: invalid value encountered in divide\n", + ":89: RuntimeWarning: divide by zero encountered in divide\n", + ":89: RuntimeWarning: invalid value encountered in divide\n", + ":89: RuntimeWarning: divide by zero encountered in divide\n", + ":89: RuntimeWarning: invalid value encountered in divide\n" + ] + }, + { + "name": "stdout", + "output_type": "stream", + "text": [ + "LSX Otx2 Gaba LSX Otx2 Gaba\n", + "N_contact_pairs = 103\n", + "N_noncontact_cell_pairs = 103\n", + "STN-PSTN Pitx2 Glut STN-PSTN Pitx2 Glut\n", + "N_contact_pairs = 175\n", + "N_noncontact_cell_pairs = 175\n", + "MS-SF Bsx Glut MS-SF Bsx Glut\n", + "N_contact_pairs = 108\n", + "N_noncontact_cell_pairs = 108\n", + "OT D3 Folh1 Gaba SI-MA-LPO-LHA Skor1 Glut\n", + "N_contact_pairs = 283\n", + "N_noncontact_cell_pairs = 283\n", + "N_contact_pairs = 283\n", + "N_noncontact_cell_pairs = 283\n", + "MPO-ADP Lhx8 Gaba MPO-ADP Lhx8 Gaba\n", + "N_contact_pairs = 154\n", + "N_noncontact_cell_pairs = 154\n", + "CEA-BST Six3 Cyp26b1 Gaba CEA-BST Six3 Cyp26b1 Gaba\n", + "N_contact_pairs = 229\n", + "N_noncontact_cell_pairs = 229\n", + "Astro-NT NN Peri NN\n" + ] + }, + { + "name": "stderr", + "output_type": "stream", + "text": [ + ":89: RuntimeWarning: divide by zero encountered in divide\n", + ":89: RuntimeWarning: invalid value encountered in divide\n", + ":89: RuntimeWarning: divide by zero encountered in divide\n", + ":89: RuntimeWarning: invalid value encountered in divide\n", + ":89: RuntimeWarning: divide by zero encountered in divide\n", + ":89: RuntimeWarning: invalid value encountered in divide\n", + ":89: RuntimeWarning: divide by zero encountered in divide\n", + ":89: RuntimeWarning: invalid value encountered in divide\n", + ":89: RuntimeWarning: divide by zero encountered in divide\n", + ":89: RuntimeWarning: invalid value encountered in divide\n" + ] + }, + { + "name": "stdout", + "output_type": "stream", + "text": [ + "N_contact_pairs = 1071\n", + "N_noncontact_cell_pairs = 1071\n", + "N_contact_pairs = 1071\n", + "N_noncontact_cell_pairs = 1071\n", + "GPe-SI Sox6 Cyp26b1 Gaba GPe-SI Sox6 Cyp26b1 Gaba\n" + ] + }, + { + "name": "stderr", + "output_type": "stream", + "text": [ + ":89: RuntimeWarning: divide by zero encountered in divide\n", + ":89: RuntimeWarning: invalid value encountered in divide\n", + ":89: RuntimeWarning: divide by zero encountered in divide\n", + ":89: RuntimeWarning: invalid value encountered in divide\n", + ":89: RuntimeWarning: divide by zero encountered in divide\n", + ":89: RuntimeWarning: invalid value encountered in divide\n" + ] + }, + { + "name": "stdout", + "output_type": "stream", + "text": [ + "N_contact_pairs = 73\n", + "N_noncontact_cell_pairs = 73\n", + "Astro-NT NN Microglia NN\n", + "N_contact_pairs = 3537\n", + "N_noncontact_cell_pairs = 3537\n" + ] + }, + { + "name": "stderr", + "output_type": "stream", + "text": [ + ":89: RuntimeWarning: divide by zero encountered in divide\n", + ":89: RuntimeWarning: invalid value encountered in divide\n" + ] + }, + { + "name": "stdout", + "output_type": "stream", + "text": [ + "N_contact_pairs = 3537\n", + "N_noncontact_cell_pairs = 3537\n", + "Endo NN STN-PSTN Pitx2 Glut\n", + "N_contact_pairs = 137\n", + "N_noncontact_cell_pairs = 137\n" + ] + }, + { + "name": "stderr", + "output_type": "stream", + "text": [ + ":89: RuntimeWarning: divide by zero encountered in divide\n", + ":89: RuntimeWarning: invalid value encountered in divide\n", + ":89: RuntimeWarning: divide by zero encountered in divide\n", + ":89: RuntimeWarning: invalid value encountered in divide\n", + ":89: RuntimeWarning: divide by zero encountered in divide\n", + ":89: RuntimeWarning: invalid value encountered in divide\n", + ":89: RuntimeWarning: divide by zero encountered in divide\n", + ":89: RuntimeWarning: invalid value encountered in divide\n" + ] + }, + { + "name": "stdout", + "output_type": "stream", + "text": [ + "N_contact_pairs = 137\n", + "N_noncontact_cell_pairs = 137\n", + "MEA-BST Sox6 Gaba MEA-BST Sox6 Gaba\n", + "N_contact_pairs = 176\n", + "N_noncontact_cell_pairs = 176\n", + "OPC NN OPC NN\n", + "N_contact_pairs = 446\n", + "N_noncontact_cell_pairs = 446\n", + "Astro-NT NN OPC NN\n" + ] + }, + { + "name": "stderr", + "output_type": "stream", + "text": [ + ":89: RuntimeWarning: divide by zero encountered in divide\n", + ":89: RuntimeWarning: invalid value encountered in divide\n", + ":89: RuntimeWarning: divide by zero encountered in divide\n", + ":89: RuntimeWarning: invalid value encountered in divide\n" + ] + }, + { + "name": "stdout", + "output_type": "stream", + "text": [ + "N_contact_pairs = 2490\n", + "N_noncontact_cell_pairs = 2490\n", + "N_contact_pairs = 2490\n", + "N_noncontact_cell_pairs = 2490\n" + ] + }, + { + "name": "stderr", + "output_type": "stream", + "text": [ + ":89: RuntimeWarning: divide by zero encountered in divide\n", + ":89: RuntimeWarning: invalid value encountered in divide\n", + ":89: RuntimeWarning: divide by zero encountered in divide\n", + ":89: RuntimeWarning: invalid value encountered in divide\n", + ":89: RuntimeWarning: divide by zero encountered in divide\n", + ":89: RuntimeWarning: invalid value encountered in divide\n", + ":89: RuntimeWarning: divide by zero encountered in divide\n", + ":89: RuntimeWarning: invalid value encountered in divide\n", + ":89: RuntimeWarning: divide by zero encountered in divide\n", + ":89: RuntimeWarning: invalid value encountered in divide\n" + ] + }, + { + "name": "stdout", + "output_type": "stream", + "text": [ + "CEA-BST Rai14 Pdyn Crh Gaba CEA-BST Rai14 Pdyn Crh Gaba\n", + "N_contact_pairs = 41\n", + "N_noncontact_cell_pairs = 41\n", + "Peri NN Peri NN\n", + "N_contact_pairs = 89\n", + "N_noncontact_cell_pairs = 89\n", + "LSX Prdm12 Slit2 Gaba TRS-BAC Sln Glut\n", + "N_contact_pairs = 494\n", + "N_noncontact_cell_pairs = 494\n", + "N_contact_pairs = 494\n", + "N_noncontact_cell_pairs = 494\n", + "Endo NN RT-ZI Gnb3 Gaba\n", + "N_contact_pairs = 144\n", + "N_noncontact_cell_pairs = 144\n" + ] + }, + { + "name": "stderr", + "output_type": "stream", + "text": [ + ":89: RuntimeWarning: divide by zero encountered in divide\n", + ":89: RuntimeWarning: invalid value encountered in divide\n", + ":89: RuntimeWarning: divide by zero encountered in divide\n", + ":89: RuntimeWarning: invalid value encountered in divide\n", + ":89: RuntimeWarning: divide by zero encountered in divide\n", + ":89: RuntimeWarning: invalid value encountered in divide\n", + ":89: RuntimeWarning: divide by zero encountered in divide\n", + ":89: RuntimeWarning: invalid value encountered in divide\n" + ] + }, + { + "name": "stdout", + "output_type": "stream", + "text": [ + "N_contact_pairs = 144\n", + "N_noncontact_cell_pairs = 144\n", + "AVPV-MEPO-SFO Tbr1 Glut PVR Six3 Sox3 Gaba\n", + "N_contact_pairs = 62\n", + "N_noncontact_cell_pairs = 62\n", + "N_contact_pairs = 62\n", + "N_noncontact_cell_pairs = 62\n", + "Astro-NT NN RT-ZI Gnb3 Gaba\n", + "N_contact_pairs = 168\n", + "N_noncontact_cell_pairs = 168\n" + ] + }, + { + "name": "stderr", + "output_type": "stream", + "text": [ + ":89: RuntimeWarning: divide by zero encountered in divide\n", + ":89: RuntimeWarning: invalid value encountered in divide\n", + ":89: RuntimeWarning: divide by zero encountered in divide\n", + ":89: RuntimeWarning: invalid value encountered in divide\n" + ] + }, + { + "name": "stdout", + "output_type": "stream", + "text": [ + "N_contact_pairs = 168\n", + "N_noncontact_cell_pairs = 168\n", + "Astro-NT NN TRS-BAC Sln Glut\n", + "N_contact_pairs = 986\n", + "N_noncontact_cell_pairs = 986\n" + ] + }, + { + "name": "stderr", + "output_type": "stream", + "text": [ + ":89: RuntimeWarning: divide by zero encountered in divide\n", + ":89: RuntimeWarning: invalid value encountered in divide\n", + ":89: RuntimeWarning: divide by zero encountered in divide\n", + ":89: RuntimeWarning: invalid value encountered in divide\n" + ] + }, + { + "name": "stdout", + "output_type": "stream", + "text": [ + "N_contact_pairs = 986\n", + "N_noncontact_cell_pairs = 986\n", + "Oligo NN STR-PAL Chst9 Gaba\n", + "N_contact_pairs = 1585\n", + "N_noncontact_cell_pairs = 1585\n" + ] + }, + { + "name": "stderr", + "output_type": "stream", + "text": [ + ":89: RuntimeWarning: divide by zero encountered in divide\n", + ":89: RuntimeWarning: invalid value encountered in divide\n" + ] + }, + { + "name": "stdout", + "output_type": "stream", + "text": [ + "N_contact_pairs = 1585\n", + "N_noncontact_cell_pairs = 1585\n", + "SI-MA-LPO-LHA Skor1 Glut SI-MA-LPO-LHA Skor1 Glut\n", + "N_contact_pairs = 198\n", + "N_noncontact_cell_pairs = 198\n", + "Endo NN TRS-BAC Sln Glut\n" + ] + }, + { + "name": "stderr", + "output_type": "stream", + "text": [ + ":89: RuntimeWarning: divide by zero encountered in divide\n", + ":89: RuntimeWarning: invalid value encountered in divide\n", + ":89: RuntimeWarning: divide by zero encountered in divide\n", + ":89: RuntimeWarning: invalid value encountered in divide\n", + ":89: RuntimeWarning: divide by zero encountered in divide\n", + ":89: RuntimeWarning: invalid value encountered in divide\n" + ] + }, + { + "name": "stdout", + "output_type": "stream", + "text": [ + "N_contact_pairs = 1372\n", + "N_noncontact_cell_pairs = 1372\n", + "N_contact_pairs = 1372\n", + "N_noncontact_cell_pairs = 1372\n", + "Astro-NT NN NDB-SI-MA-STRv Lhx8 Gaba\n" + ] + }, + { + "name": "stderr", + "output_type": "stream", + "text": [ + ":89: RuntimeWarning: divide by zero encountered in divide\n", + ":89: RuntimeWarning: invalid value encountered in divide\n" + ] + }, + { + "name": "stdout", + "output_type": "stream", + "text": [ + "N_contact_pairs = 5075\n", + "N_noncontact_cell_pairs = 5075\n" + ] + }, + { + "name": "stderr", + "output_type": "stream", + "text": [ + ":89: RuntimeWarning: divide by zero encountered in divide\n", + ":89: RuntimeWarning: invalid value encountered in divide\n" + ] + }, + { + "name": "stdout", + "output_type": "stream", + "text": [ + "N_contact_pairs = 5075\n", + "N_noncontact_cell_pairs = 5075\n", + "LSX Nkx2-1 Gaba LSX Nkx2-1 Gaba\n" + ] + }, + { + "name": "stderr", + "output_type": "stream", + "text": [ + ":89: RuntimeWarning: divide by zero encountered in divide\n", + ":89: RuntimeWarning: invalid value encountered in divide\n", + ":89: RuntimeWarning: divide by zero encountered in divide\n", + ":89: RuntimeWarning: invalid value encountered in divide\n", + ":89: RuntimeWarning: divide by zero encountered in divide\n", + ":89: RuntimeWarning: invalid value encountered in divide\n", + ":89: RuntimeWarning: divide by zero encountered in divide\n", + ":89: RuntimeWarning: invalid value encountered in divide\n" + ] + }, + { + "name": "stdout", + "output_type": "stream", + "text": [ + "N_contact_pairs = 28\n", + "N_noncontact_cell_pairs = 28\n", + "MEA-BST Lhx6 Sp9 Gaba MEA-BST Lhx6 Sp9 Gaba\n", + "N_contact_pairs = 68\n", + "N_noncontact_cell_pairs = 68\n", + "Astro-NT NN MPO-ADP Lhx8 Gaba\n", + "N_contact_pairs = 260\n", + "N_noncontact_cell_pairs = 260\n", + "N_contact_pairs = 260\n", + "N_noncontact_cell_pairs = 260\n" + ] + }, + { + "name": "stderr", + "output_type": "stream", + "text": [ + ":89: RuntimeWarning: divide by zero encountered in divide\n", + ":89: RuntimeWarning: invalid value encountered in divide\n", + ":89: RuntimeWarning: divide by zero encountered in divide\n", + ":89: RuntimeWarning: invalid value encountered in divide\n" + ] + }, + { + "name": "stdout", + "output_type": "stream", + "text": [ + "Endo NN NDB-SI-MA-STRv Lhx8 Gaba\n", + "N_contact_pairs = 3303\n", + "N_noncontact_cell_pairs = 3303\n", + "N_contact_pairs = 3303\n", + "N_noncontact_cell_pairs = 3303\n", + "OPC NN TRS-BAC Sln Glut\n", + "N_contact_pairs = 546\n", + "N_noncontact_cell_pairs = 546\n" + ] + }, + { + "name": "stderr", + "output_type": "stream", + "text": [ + ":89: RuntimeWarning: divide by zero encountered in divide\n", + ":89: RuntimeWarning: invalid value encountered in divide\n", + ":89: RuntimeWarning: divide by zero encountered in divide\n", + ":89: RuntimeWarning: invalid value encountered in divide\n", + ":89: RuntimeWarning: divide by zero encountered in divide\n", + ":89: RuntimeWarning: invalid value encountered in divide\n", + ":89: RuntimeWarning: divide by zero encountered in divide\n", + ":89: RuntimeWarning: invalid value encountered in divide\n" + ] + }, + { + "name": "stdout", + "output_type": "stream", + "text": [ + "N_contact_pairs = 546\n", + "N_noncontact_cell_pairs = 546\n", + "OT D3 Folh1 Gaba Peri NN\n", + "N_contact_pairs = 139\n", + "N_noncontact_cell_pairs = 139\n", + "N_contact_pairs = 139\n", + "N_noncontact_cell_pairs = 139\n", + "Oligo NN TRS-BAC Sln Glut\n" + ] + }, + { + "name": "stderr", + "output_type": "stream", + "text": [ + ":89: RuntimeWarning: divide by zero encountered in divide\n", + ":89: RuntimeWarning: invalid value encountered in divide\n" + ] + }, + { + "name": "stdout", + "output_type": "stream", + "text": [ + "N_contact_pairs = 3522\n", + "N_noncontact_cell_pairs = 3522\n" + ] + }, + { + "name": "stderr", + "output_type": "stream", + "text": [ + ":89: RuntimeWarning: divide by zero encountered in divide\n", + ":89: RuntimeWarning: invalid value encountered in divide\n" + ] + }, + { + "name": "stdout", + "output_type": "stream", + "text": [ + "N_contact_pairs = 3522\n", + "N_noncontact_cell_pairs = 3522\n", + "STR-PAL Chst9 Gaba VLMC NN\n", + "N_contact_pairs = 56\n", + "N_noncontact_cell_pairs = 56\n" + ] + }, + { + "name": "stderr", + "output_type": "stream", + "text": [ + ":89: RuntimeWarning: divide by zero encountered in divide\n", + ":89: RuntimeWarning: invalid value encountered in divide\n", + ":89: RuntimeWarning: divide by zero encountered in divide\n", + ":89: RuntimeWarning: invalid value encountered in divide\n", + ":89: RuntimeWarning: divide by zero encountered in divide\n", + ":89: RuntimeWarning: invalid value encountered in divide\n" + ] + }, + { + "name": "stdout", + "output_type": "stream", + "text": [ + "N_contact_pairs = 56\n", + "N_noncontact_cell_pairs = 56\n", + "NDB-SI-MA-STRv Lhx8 Gaba Oligo NN\n", + "N_contact_pairs = 6798\n", + "N_noncontact_cell_pairs = 6798\n" + ] + }, + { + "name": "stderr", + "output_type": "stream", + "text": [ + ":89: RuntimeWarning: divide by zero encountered in divide\n", + ":89: RuntimeWarning: invalid value encountered in divide\n" + ] + }, + { + "name": "stdout", + "output_type": "stream", + "text": [ + "N_contact_pairs = 6798\n", + "N_noncontact_cell_pairs = 6798\n" + ] + }, + { + "name": "stderr", + "output_type": "stream", + "text": [ + ":89: RuntimeWarning: divide by zero encountered in divide\n", + ":89: RuntimeWarning: invalid value encountered in divide\n" + ] + }, + { + "name": "stdout", + "output_type": "stream", + "text": [ + "Oligo NN Peri NN\n", + "N_contact_pairs = 1874\n", + "N_noncontact_cell_pairs = 1874\n" + ] + }, + { + "name": "stderr", + "output_type": "stream", + "text": [ + ":89: RuntimeWarning: divide by zero encountered in divide\n", + ":89: RuntimeWarning: invalid value encountered in divide\n" + ] + }, + { + "name": "stdout", + "output_type": "stream", + "text": [ + "N_contact_pairs = 1874\n", + "N_noncontact_cell_pairs = 1874\n", + "GPe-SI Sox6 Cyp26b1 Gaba Oligo NN\n" + ] + }, + { + "name": "stderr", + "output_type": "stream", + "text": [ + ":89: RuntimeWarning: divide by zero encountered in divide\n", + ":89: RuntimeWarning: invalid value encountered in divide\n" + ] + }, + { + "name": "stdout", + "output_type": "stream", + "text": [ + "N_contact_pairs = 1111\n", + "N_noncontact_cell_pairs = 1111\n" + ] + }, + { + "name": "stderr", + "output_type": "stream", + "text": [ + ":89: RuntimeWarning: divide by zero encountered in divide\n", + ":89: RuntimeWarning: invalid value encountered in divide\n" + ] + }, + { + "name": "stdout", + "output_type": "stream", + "text": [ + "N_contact_pairs = 1111\n", + "N_noncontact_cell_pairs = 1111\n", + "Astro-NT NN BAM NN\n", + "N_contact_pairs = 152\n", + "N_noncontact_cell_pairs = 152\n" + ] + }, + { + "name": "stderr", + "output_type": "stream", + "text": [ + ":89: RuntimeWarning: divide by zero encountered in divide\n", + ":89: RuntimeWarning: invalid value encountered in divide\n", + ":89: RuntimeWarning: divide by zero encountered in divide\n", + ":89: RuntimeWarning: invalid value encountered in divide\n" + ] + }, + { + "name": "stdout", + "output_type": "stream", + "text": [ + "N_contact_pairs = 152\n", + "N_noncontact_cell_pairs = 152\n", + "Oligo NN SI-MA-LPO-LHA Skor1 Glut\n", + "N_contact_pairs = 1137\n", + "N_noncontact_cell_pairs = 1137\n" + ] + }, + { + "name": "stderr", + "output_type": "stream", + "text": [ + ":89: RuntimeWarning: divide by zero encountered in divide\n", + ":89: RuntimeWarning: invalid value encountered in divide\n", + ":89: RuntimeWarning: divide by zero encountered in divide\n", + ":89: RuntimeWarning: invalid value encountered in divide\n" + ] + }, + { + "name": "stdout", + "output_type": "stream", + "text": [ + "N_contact_pairs = 1137\n", + "N_noncontact_cell_pairs = 1137\n", + "SI-MA-ACB Ebf1 Bnc2 Gaba STR-PAL Chst9 Gaba\n", + "N_contact_pairs = 95\n", + "N_noncontact_cell_pairs = 95\n", + "N_contact_pairs = 95\n", + "N_noncontact_cell_pairs = 95\n", + "Astro-NT NN LSX Otx2 Gaba\n" + ] + }, + { + "name": "stderr", + "output_type": "stream", + "text": [ + ":89: RuntimeWarning: divide by zero encountered in divide\n", + ":89: RuntimeWarning: invalid value encountered in divide\n", + ":89: RuntimeWarning: divide by zero encountered in divide\n", + ":89: RuntimeWarning: invalid value encountered in divide\n", + ":89: RuntimeWarning: divide by zero encountered in divide\n", + ":89: RuntimeWarning: invalid value encountered in divide\n", + ":89: RuntimeWarning: divide by zero encountered in divide\n", + ":89: RuntimeWarning: invalid value encountered in divide\n" + ] + }, + { + "name": "stdout", + "output_type": "stream", + "text": [ + "N_contact_pairs = 101\n", + "N_noncontact_cell_pairs = 101\n", + "N_contact_pairs = 101\n", + "N_noncontact_cell_pairs = 101\n", + "Astro-NT NN Astro-NT NN\n", + "N_contact_pairs = 4988\n", + "N_noncontact_cell_pairs = 4988\n" + ] + }, + { + "name": "stderr", + "output_type": "stream", + "text": [ + ":89: RuntimeWarning: divide by zero encountered in divide\n", + ":89: RuntimeWarning: invalid value encountered in divide\n", + ":89: RuntimeWarning: divide by zero encountered in divide\n", + ":89: RuntimeWarning: invalid value encountered in divide\n", + ":89: RuntimeWarning: divide by zero encountered in divide\n", + ":89: RuntimeWarning: invalid value encountered in divide\n", + ":89: RuntimeWarning: divide by zero encountered in divide\n", + ":89: RuntimeWarning: invalid value encountered in divide\n" + ] + }, + { + "name": "stdout", + "output_type": "stream", + "text": [ + "OT D3 Folh1 Gaba STR-PAL Chst9 Gaba\n", + "N_contact_pairs = 743\n", + "N_noncontact_cell_pairs = 743\n", + "N_contact_pairs = 743\n", + "N_noncontact_cell_pairs = 743\n", + "Endo NN OPC NN\n", + "N_contact_pairs = 1649\n", + "N_noncontact_cell_pairs = 1649\n" + ] + }, + { + "name": "stderr", + "output_type": "stream", + "text": [ + ":89: RuntimeWarning: divide by zero encountered in divide\n", + ":89: RuntimeWarning: invalid value encountered in divide\n", + ":89: RuntimeWarning: divide by zero encountered in divide\n", + ":89: RuntimeWarning: invalid value encountered in divide\n", + ":89: RuntimeWarning: divide by zero encountered in divide\n", + ":89: RuntimeWarning: invalid value encountered in divide\n" + ] + }, + { + "name": "stdout", + "output_type": "stream", + "text": [ + "N_contact_pairs = 1649\n", + "N_noncontact_cell_pairs = 1649\n", + "BST Tac2 Gaba BST Tac2 Gaba\n", + "N_contact_pairs = 31\n", + "N_noncontact_cell_pairs = 31\n", + "Microglia NN TRS-BAC Sln Glut\n", + "N_contact_pairs = 388\n", + "N_noncontact_cell_pairs = 388\n", + "N_contact_pairs = 388\n", + "N_noncontact_cell_pairs = 388\n" + ] + }, + { + "name": "stderr", + "output_type": "stream", + "text": [ + ":89: RuntimeWarning: divide by zero encountered in divide\n", + ":89: RuntimeWarning: invalid value encountered in divide\n", + ":89: RuntimeWarning: divide by zero encountered in divide\n", + ":89: RuntimeWarning: invalid value encountered in divide\n", + ":89: RuntimeWarning: divide by zero encountered in divide\n", + ":89: RuntimeWarning: invalid value encountered in divide\n" + ] + }, + { + "name": "stdout", + "output_type": "stream", + "text": [ + "Astro-NT NN PVR Six3 Sox3 Gaba\n", + "N_contact_pairs = 141\n", + "N_noncontact_cell_pairs = 141\n", + "N_contact_pairs = 141\n", + "N_noncontact_cell_pairs = 141\n", + "Microglia NN Sst Chodl Gaba\n" + ] + }, + { + "name": "stderr", + "output_type": "stream", + "text": [ + ":89: RuntimeWarning: divide by zero encountered in divide\n", + ":89: RuntimeWarning: invalid value encountered in divide\n", + ":89: RuntimeWarning: divide by zero encountered in divide\n", + ":89: RuntimeWarning: invalid value encountered in divide\n", + ":89: RuntimeWarning: divide by zero encountered in divide\n", + ":89: RuntimeWarning: invalid value encountered in divide\n", + ":89: RuntimeWarning: divide by zero encountered in divide\n", + ":89: RuntimeWarning: invalid value encountered in divide\n", + ":89: RuntimeWarning: divide by zero encountered in divide\n", + ":89: RuntimeWarning: invalid value encountered in divide\n" + ] + }, + { + "name": "stdout", + "output_type": "stream", + "text": [ + "N_contact_pairs = 131\n", + "N_noncontact_cell_pairs = 131\n", + "N_contact_pairs = 131\n", + "N_noncontact_cell_pairs = 131\n", + "ACB-BST-FS D1 Gaba CEA-AAA-BST Six3 Sp9 Gaba\n", + "N_contact_pairs = 86\n", + "N_noncontact_cell_pairs = 86\n", + "N_contact_pairs = 86\n", + "N_noncontact_cell_pairs = 86\n", + "Endo NN SI-MA-LPO-LHA Skor1 Glut\n", + "N_contact_pairs = 641\n", + "N_noncontact_cell_pairs = 641\n" + ] + }, + { + "name": "stderr", + "output_type": "stream", + "text": [ + ":89: RuntimeWarning: divide by zero encountered in divide\n", + ":89: RuntimeWarning: invalid value encountered in divide\n", + ":89: RuntimeWarning: divide by zero encountered in divide\n", + ":89: RuntimeWarning: invalid value encountered in divide\n", + ":89: RuntimeWarning: divide by zero encountered in divide\n", + ":89: RuntimeWarning: invalid value encountered in divide\n" + ] + }, + { + "name": "stdout", + "output_type": "stream", + "text": [ + "N_contact_pairs = 641\n", + "N_noncontact_cell_pairs = 641\n", + "Microglia NN Peri NN\n", + "N_contact_pairs = 386\n", + "N_noncontact_cell_pairs = 386\n", + "N_contact_pairs = 386\n", + "N_noncontact_cell_pairs = 386\n", + "Astro-NT NN MS-SF Bsx Glut\n" + ] + }, + { + "name": "stderr", + "output_type": "stream", + "text": [ + ":89: RuntimeWarning: divide by zero encountered in divide\n", + ":89: RuntimeWarning: invalid value encountered in divide\n", + ":89: RuntimeWarning: divide by zero encountered in divide\n", + ":89: RuntimeWarning: invalid value encountered in divide\n", + ":89: RuntimeWarning: divide by zero encountered in divide\n", + ":89: RuntimeWarning: invalid value encountered in divide\n" + ] + }, + { + "name": "stdout", + "output_type": "stream", + "text": [ + "N_contact_pairs = 293\n", + "N_noncontact_cell_pairs = 293\n", + "N_contact_pairs = 293\n", + "N_noncontact_cell_pairs = 293\n", + "MS-SF Bsx Glut Oligo NN\n", + "N_contact_pairs = 445\n", + "N_noncontact_cell_pairs = 445\n" + ] + }, + { + "name": "stderr", + "output_type": "stream", + "text": [ + ":89: RuntimeWarning: divide by zero encountered in divide\n", + ":89: RuntimeWarning: invalid value encountered in divide\n" + ] + }, + { + "name": "stdout", + "output_type": "stream", + "text": [ + "N_contact_pairs = 445\n", + "N_noncontact_cell_pairs = 445\n", + "Microglia NN OPC NN\n", + "N_contact_pairs = 948\n", + "N_noncontact_cell_pairs = 948\n" + ] + }, + { + "name": "stderr", + "output_type": "stream", + "text": [ + ":89: RuntimeWarning: divide by zero encountered in divide\n", + ":89: RuntimeWarning: invalid value encountered in divide\n", + ":89: RuntimeWarning: divide by zero encountered in divide\n", + ":89: RuntimeWarning: invalid value encountered in divide\n" + ] + }, + { + "name": "stdout", + "output_type": "stream", + "text": [ + "N_contact_pairs = 948\n", + "N_noncontact_cell_pairs = 948\n", + "BST-po Iigp1 Glut OPC NN\n", + "N_contact_pairs = 98\n", + "N_noncontact_cell_pairs = 98\n", + "N_contact_pairs = 98\n", + "N_noncontact_cell_pairs = 98\n", + "OPC NN STR Lhx8 Gaba\n", + "N_contact_pairs = 63\n", + "N_noncontact_cell_pairs = 63\n", + "N_contact_pairs = 63\n", + "N_noncontact_cell_pairs = 63\n", + "PVR Six3 Sox3 Gaba PVR Six3 Sox3 Gaba\n", + "N_contact_pairs = 26\n", + "N_noncontact_cell_pairs = 26\n" + ] + }, + { + "name": "stderr", + "output_type": "stream", + "text": [ + ":89: RuntimeWarning: divide by zero encountered in divide\n", + ":89: RuntimeWarning: invalid value encountered in divide\n", + ":89: RuntimeWarning: divide by zero encountered in divide\n", + ":89: RuntimeWarning: invalid value encountered in divide\n", + ":89: RuntimeWarning: divide by zero encountered in divide\n", + ":89: RuntimeWarning: invalid value encountered in divide\n", + ":89: RuntimeWarning: divide by zero encountered in divide\n", + ":89: RuntimeWarning: invalid value encountered in divide\n", + ":89: RuntimeWarning: divide by zero encountered in divide\n", + ":89: RuntimeWarning: invalid value encountered in divide\n", + ":89: RuntimeWarning: divide by zero encountered in divide\n", + ":89: RuntimeWarning: invalid value encountered in divide\n" + ] + }, + { + "name": "stdout", + "output_type": "stream", + "text": [ + "Astro-NT NN MEA-BST Lhx6 Nr2e1 Gaba\n", + "N_contact_pairs = 64\n", + "N_noncontact_cell_pairs = 64\n", + "N_contact_pairs = 64\n", + "N_noncontact_cell_pairs = 64\n", + "SMC NN STR-PAL Chst9 Gaba\n" + ] + }, + { + "name": "stderr", + "output_type": "stream", + "text": [ + ":89: RuntimeWarning: divide by zero encountered in divide\n", + ":89: RuntimeWarning: invalid value encountered in divide\n", + ":89: RuntimeWarning: divide by zero encountered in divide\n", + ":89: RuntimeWarning: invalid value encountered in divide\n", + ":89: RuntimeWarning: divide by zero encountered in divide\n", + ":89: RuntimeWarning: invalid value encountered in divide\n", + ":89: RuntimeWarning: divide by zero encountered in divide\n", + ":89: RuntimeWarning: invalid value encountered in divide\n" + ] + }, + { + "name": "stdout", + "output_type": "stream", + "text": [ + "N_contact_pairs = 61\n", + "N_noncontact_cell_pairs = 61\n", + "N_contact_pairs = 61\n", + "N_noncontact_cell_pairs = 61\n", + "LSX Sall3 Lmo1 Gaba Oligo NN\n", + "N_contact_pairs = 152\n", + "N_noncontact_cell_pairs = 152\n" + ] + }, + { + "name": "stderr", + "output_type": "stream", + "text": [ + ":89: RuntimeWarning: divide by zero encountered in divide\n", + ":89: RuntimeWarning: invalid value encountered in divide\n" + ] + }, + { + "name": "stdout", + "output_type": "stream", + "text": [ + "N_contact_pairs = 152\n", + "N_noncontact_cell_pairs = 152\n", + "MPO-ADP Lhx8 Gaba Microglia NN\n", + "N_contact_pairs = 68\n", + "N_noncontact_cell_pairs = 68\n", + "N_contact_pairs = 68\n", + "N_noncontact_cell_pairs = 68\n", + "Oligo NN STR D1 Sema5a Gaba\n" + ] + }, + { + "name": "stderr", + "output_type": "stream", + "text": [ + ":89: RuntimeWarning: divide by zero encountered in divide\n", + ":89: RuntimeWarning: invalid value encountered in divide\n", + ":89: RuntimeWarning: divide by zero encountered in divide\n", + ":89: RuntimeWarning: invalid value encountered in divide\n", + ":89: RuntimeWarning: divide by zero encountered in divide\n", + ":89: RuntimeWarning: invalid value encountered in divide\n" + ] + }, + { + "name": "stdout", + "output_type": "stream", + "text": [ + "N_contact_pairs = 188\n", + "N_noncontact_cell_pairs = 188\n", + "N_contact_pairs = 188\n", + "N_noncontact_cell_pairs = 188\n" + ] + }, + { + "name": "stderr", + "output_type": "stream", + "text": [ + ":89: RuntimeWarning: divide by zero encountered in divide\n", + ":89: RuntimeWarning: invalid value encountered in divide\n", + ":89: RuntimeWarning: divide by zero encountered in divide\n", + ":89: RuntimeWarning: invalid value encountered in divide\n" + ] + }, + { + "name": "stdout", + "output_type": "stream", + "text": [ + "SI-MA-LPO-LHA Skor1 Glut STR-PAL Chst9 Gaba\n", + "N_contact_pairs = 155\n", + "N_noncontact_cell_pairs = 155\n", + "N_contact_pairs = 155\n", + "N_noncontact_cell_pairs = 155\n", + "CEA-BST Ebf1 Pdyn Gaba CEA-BST Six3 Cyp26b1 Gaba\n", + "N_contact_pairs = 303\n", + "N_noncontact_cell_pairs = 303\n", + "N_contact_pairs = 303\n", + "N_noncontact_cell_pairs = 303\n", + "MS-SF Bsx Glut OPC NN\n", + "N_contact_pairs = 87\n", + "N_noncontact_cell_pairs = 87\n", + "N_contact_pairs = 87\n", + "N_noncontact_cell_pairs = 87\n" + ] + }, + { + "name": "stderr", + "output_type": "stream", + "text": [ + ":89: RuntimeWarning: divide by zero encountered in divide\n", + ":89: RuntimeWarning: invalid value encountered in divide\n", + ":89: RuntimeWarning: divide by zero encountered in divide\n", + ":89: RuntimeWarning: invalid value encountered in divide\n", + ":89: RuntimeWarning: divide by zero encountered in divide\n", + ":89: RuntimeWarning: invalid value encountered in divide\n", + ":89: RuntimeWarning: divide by zero encountered in divide\n", + ":89: RuntimeWarning: invalid value encountered in divide\n", + ":89: RuntimeWarning: divide by zero encountered in divide\n", + ":89: RuntimeWarning: invalid value encountered in divide\n", + ":89: RuntimeWarning: divide by zero encountered in divide\n", + ":89: RuntimeWarning: invalid value encountered in divide\n" + ] + }, + { + "name": "stdout", + "output_type": "stream", + "text": [ + "Pons\n" + ] + }, + { + "name": "stderr", + "output_type": "stream", + "text": [ + ":25: ImplicitModificationWarning: Trying to modify attribute `.obs` of view, initializing view as actual.\n", + ":28: ImplicitModificationWarning: Trying to modify attribute `.obs` of view, initializing view as actual.\n" + ] + }, + { + "name": "stdout", + "output_type": "stream", + "text": [ + "SMC NN SMC NN\n", + "N_contact_pairs = 1011\n", + "N_noncontact_cell_pairs = 1011\n", + "VLMC NN VLMC NN\n", + "N_contact_pairs = 1540\n", + "N_noncontact_cell_pairs = 1540\n", + "Ependymal NN Ependymal NN\n", + "N_contact_pairs = 840\n", + "N_noncontact_cell_pairs = 105\n", + "SMC NN VLMC NN\n", + "N_contact_pairs = 1118\n", + "N_noncontact_cell_pairs = 1118\n" + ] + }, + { + "name": "stderr", + "output_type": "stream", + "text": [ + ":89: RuntimeWarning: divide by zero encountered in divide\n", + ":89: RuntimeWarning: invalid value encountered in divide\n", + ":89: RuntimeWarning: divide by zero encountered in divide\n", + ":89: RuntimeWarning: invalid value encountered in divide\n", + ":89: RuntimeWarning: divide by zero encountered in divide\n", + ":89: RuntimeWarning: invalid value encountered in divide\n", + ":89: RuntimeWarning: divide by zero encountered in divide\n", + ":89: RuntimeWarning: invalid value encountered in divide\n" + ] + }, + { + "name": "stdout", + "output_type": "stream", + "text": [ + "N_contact_pairs = 1118\n", + "N_noncontact_cell_pairs = 1118\n", + "ABC NN VLMC NN\n", + "N_contact_pairs = 678\n", + "N_noncontact_cell_pairs = 678\n", + "N_contact_pairs = 678\n", + "N_noncontact_cell_pairs = 678\n", + "Endo NN SMC NN\n" + ] + }, + { + "name": "stderr", + "output_type": "stream", + "text": [ + ":89: RuntimeWarning: divide by zero encountered in divide\n", + ":89: RuntimeWarning: invalid value encountered in divide\n", + ":89: RuntimeWarning: divide by zero encountered in divide\n", + ":89: RuntimeWarning: invalid value encountered in divide\n", + ":89: RuntimeWarning: divide by zero encountered in divide\n", + ":89: RuntimeWarning: invalid value encountered in divide\n" + ] + }, + { + "name": "stdout", + "output_type": "stream", + "text": [ + "N_contact_pairs = 1976\n", + "N_noncontact_cell_pairs = 1976\n" + ] + }, + { + "name": "stderr", + "output_type": "stream", + "text": [ + ":89: RuntimeWarning: divide by zero encountered in divide\n", + ":89: RuntimeWarning: invalid value encountered in divide\n" + ] + }, + { + "name": "stdout", + "output_type": "stream", + "text": [ + "N_contact_pairs = 1976\n", + "N_noncontact_cell_pairs = 1976\n", + "BAM NN VLMC NN\n", + "N_contact_pairs = 463\n", + "N_noncontact_cell_pairs = 463\n", + "N_contact_pairs = 463\n", + "N_noncontact_cell_pairs = 463\n", + "Endo NN VLMC NN\n" + ] + }, + { + "name": "stderr", + "output_type": "stream", + "text": [ + ":89: RuntimeWarning: divide by zero encountered in divide\n", + ":89: RuntimeWarning: invalid value encountered in divide\n", + ":89: RuntimeWarning: divide by zero encountered in divide\n", + ":89: RuntimeWarning: invalid value encountered in divide\n", + ":89: RuntimeWarning: divide by zero encountered in divide\n", + ":89: RuntimeWarning: invalid value encountered in divide\n" + ] + }, + { + "name": "stdout", + "output_type": "stream", + "text": [ + "N_contact_pairs = 1964\n", + "N_noncontact_cell_pairs = 1964\n" + ] + }, + { + "name": "stderr", + "output_type": "stream", + "text": [ + ":89: RuntimeWarning: divide by zero encountered in divide\n", + ":89: RuntimeWarning: invalid value encountered in divide\n" + ] + }, + { + "name": "stdout", + "output_type": "stream", + "text": [ + "N_contact_pairs = 1964\n", + "N_noncontact_cell_pairs = 1964\n", + "Oligo NN Oligo NN\n" + ] + }, + { + "name": "stderr", + "output_type": "stream", + "text": [ + ":89: RuntimeWarning: divide by zero encountered in divide\n", + ":89: RuntimeWarning: invalid value encountered in divide\n" + ] + }, + { + "name": "stdout", + "output_type": "stream", + "text": [ + "N_contact_pairs = 59507\n", + "N_noncontact_cell_pairs = 59507\n" + ] + }, + { + "name": "stderr", + "output_type": "stream", + "text": [ + ":89: RuntimeWarning: divide by zero encountered in divide\n", + ":89: RuntimeWarning: invalid value encountered in divide\n" + ] + }, + { + "name": "stdout", + "output_type": "stream", + "text": [ + "ABC NN ABC NN\n", + "N_contact_pairs = 254\n", + "N_noncontact_cell_pairs = 254\n", + "MB-MY Tph2 Glut-Sero MB-MY Tph2 Glut-Sero\n", + "N_contact_pairs = 1320\n", + "N_noncontact_cell_pairs = 1320\n", + "PG-TRN-LRN Fat2 Glut PG-TRN-LRN Fat2 Glut\n", + "N_contact_pairs = 9661\n", + "N_noncontact_cell_pairs = 9661\n" + ] + }, + { + "name": "stderr", + "output_type": "stream", + "text": [ + ":89: RuntimeWarning: divide by zero encountered in divide\n", + ":89: RuntimeWarning: invalid value encountered in divide\n", + ":89: RuntimeWarning: divide by zero encountered in divide\n", + ":89: RuntimeWarning: invalid value encountered in divide\n", + ":89: RuntimeWarning: divide by zero encountered in divide\n", + ":89: RuntimeWarning: invalid value encountered in divide\n" + ] + }, + { + "name": "stdout", + "output_type": "stream", + "text": [ + "Endo NN Peri NN\n", + "N_contact_pairs = 2958\n", + "N_noncontact_cell_pairs = 2958\n" + ] + }, + { + "name": "stderr", + "output_type": "stream", + "text": [ + ":89: RuntimeWarning: divide by zero encountered in divide\n", + ":89: RuntimeWarning: invalid value encountered in divide\n" + ] + }, + { + "name": "stdout", + "output_type": "stream", + "text": [ + "N_contact_pairs = 2958\n", + "N_noncontact_cell_pairs = 2958\n", + "DTN-LDT-IPN Otp Pax3 Gaba DTN-LDT-IPN Otp Pax3 Gaba\n", + "N_contact_pairs = 1241\n", + "N_noncontact_cell_pairs = 1241\n", + "Endo NN Endo NN\n" + ] + }, + { + "name": "stderr", + "output_type": "stream", + "text": [ + ":89: RuntimeWarning: divide by zero encountered in divide\n", + ":89: RuntimeWarning: invalid value encountered in divide\n", + ":89: RuntimeWarning: divide by zero encountered in divide\n", + ":89: RuntimeWarning: invalid value encountered in divide\n" + ] + }, + { + "name": "stdout", + "output_type": "stream", + "text": [ + "N_contact_pairs = 9027\n", + "N_noncontact_cell_pairs = 9027\n" + ] + }, + { + "name": "stderr", + "output_type": "stream", + "text": [ + ":89: RuntimeWarning: divide by zero encountered in divide\n", + ":89: RuntimeWarning: invalid value encountered in divide\n" + ] + }, + { + "name": "stdout", + "output_type": "stream", + "text": [ + "Astro-NT NN Oligo NN\n", + "N_contact_pairs = 41520\n", + "N_noncontact_cell_pairs = 41520\n" + ] + }, + { + "name": "stderr", + "output_type": "stream", + "text": [ + ":89: RuntimeWarning: divide by zero encountered in divide\n", + ":89: RuntimeWarning: invalid value encountered in divide\n" + ] + }, + { + "name": "stdout", + "output_type": "stream", + "text": [ + "N_contact_pairs = 41520\n", + "N_noncontact_cell_pairs = 41520\n" + ] + }, + { + "name": "stderr", + "output_type": "stream", + "text": [ + ":89: RuntimeWarning: divide by zero encountered in divide\n", + ":89: RuntimeWarning: invalid value encountered in divide\n" + ] + }, + { + "name": "stdout", + "output_type": "stream", + "text": [ + "BAM NN BAM NN\n", + "N_contact_pairs = 63\n", + "N_noncontact_cell_pairs = 63\n", + "Astro-NT NN Endo NN\n" + ] + }, + { + "name": "stderr", + "output_type": "stream", + "text": [ + ":89: RuntimeWarning: divide by zero encountered in divide\n", + ":89: RuntimeWarning: invalid value encountered in divide\n" + ] + }, + { + "name": "stdout", + "output_type": "stream", + "text": [ + "N_contact_pairs = 18531\n", + "N_noncontact_cell_pairs = 18531\n" + ] + }, + { + "name": "stderr", + "output_type": "stream", + "text": [ + ":89: RuntimeWarning: divide by zero encountered in divide\n", + ":89: RuntimeWarning: invalid value encountered in divide\n" + ] + }, + { + "name": "stdout", + "output_type": "stream", + "text": [ + "N_contact_pairs = 18531\n", + "N_noncontact_cell_pairs = 18531\n" + ] + }, + { + "name": "stderr", + "output_type": "stream", + "text": [ + ":89: RuntimeWarning: divide by zero encountered in divide\n", + ":89: RuntimeWarning: invalid value encountered in divide\n" + ] + }, + { + "name": "stdout", + "output_type": "stream", + "text": [ + "BAM NN Endo NN\n", + "N_contact_pairs = 523\n", + "N_noncontact_cell_pairs = 523\n" + ] + }, + { + "name": "stderr", + "output_type": "stream", + "text": [ + ":89: RuntimeWarning: divide by zero encountered in divide\n", + ":89: RuntimeWarning: invalid value encountered in divide\n", + ":89: RuntimeWarning: divide by zero encountered in divide\n", + ":89: RuntimeWarning: invalid value encountered in divide\n" + ] + }, + { + "name": "stdout", + "output_type": "stream", + "text": [ + "N_contact_pairs = 523\n", + "N_noncontact_cell_pairs = 523\n", + "BAM NN SMC NN\n", + "N_contact_pairs = 151\n", + "N_noncontact_cell_pairs = 151\n", + "N_contact_pairs = 151\n", + "N_noncontact_cell_pairs = 151\n", + "PDTg Otp Olig3 Gaba PDTg Otp Olig3 Gaba\n", + "N_contact_pairs = 126\n", + "N_noncontact_cell_pairs = 126\n", + "Microglia NN Oligo NN\n" + ] + }, + { + "name": "stderr", + "output_type": "stream", + "text": [ + ":89: RuntimeWarning: divide by zero encountered in divide\n", + ":89: RuntimeWarning: invalid value encountered in divide\n", + ":89: RuntimeWarning: divide by zero encountered in divide\n", + ":89: RuntimeWarning: invalid value encountered in divide\n", + ":89: RuntimeWarning: divide by zero encountered in divide\n", + ":89: RuntimeWarning: invalid value encountered in divide\n" + ] + }, + { + "name": "stdout", + "output_type": "stream", + "text": [ + "N_contact_pairs = 8581\n", + "N_noncontact_cell_pairs = 8581\n" + ] + }, + { + "name": "stderr", + "output_type": "stream", + "text": [ + ":89: RuntimeWarning: divide by zero encountered in divide\n", + ":89: RuntimeWarning: invalid value encountered in divide\n" + ] + }, + { + "name": "stdout", + "output_type": "stream", + "text": [ + "N_contact_pairs = 8581\n", + "N_noncontact_cell_pairs = 8581\n" + ] + }, + { + "name": "stderr", + "output_type": "stream", + "text": [ + ":89: RuntimeWarning: divide by zero encountered in divide\n", + ":89: RuntimeWarning: invalid value encountered in divide\n", + ":89: RuntimeWarning: divide by zero encountered in divide\n", + ":89: RuntimeWarning: invalid value encountered in divide\n", + ":89: RuntimeWarning: divide by zero encountered in divide\n", + ":89: RuntimeWarning: invalid value encountered in divide\n", + ":89: RuntimeWarning: divide by zero encountered in divide\n", + ":89: RuntimeWarning: invalid value encountered in divide\n" + ] + }, + { + "name": "stdout", + "output_type": "stream", + "text": [ + "PB Evx2 Glut PB Evx2 Glut\n", + "N_contact_pairs = 977\n", + "N_noncontact_cell_pairs = 977\n", + "PB Lmx1a Glut PB Lmx1a Glut\n", + "N_contact_pairs = 910\n", + "N_noncontact_cell_pairs = 910\n", + "ABC NN BAM NN\n", + "N_contact_pairs = 67\n", + "N_noncontact_cell_pairs = 67\n", + "N_contact_pairs = 67\n", + "N_noncontact_cell_pairs = 67\n", + "LDT-PCG Vsx2 Lhx4 Glut LDT-PCG Vsx2 Lhx4 Glut\n", + "N_contact_pairs = 632\n", + "N_noncontact_cell_pairs = 632\n", + "PRP-NI-PRNc-GRN Otp Glut PRP-NI-PRNc-GRN Otp Glut\n", + "N_contact_pairs = 230\n", + "N_noncontact_cell_pairs = 230\n", + "PCG-PRNr Vsx2 Nkx6-1 Glut PCG-PRNr Vsx2 Nkx6-1 Glut\n", + "N_contact_pairs = 201\n", + "N_noncontact_cell_pairs = 201\n" + ] + }, + { + "name": "stderr", + "output_type": "stream", + "text": [ + ":89: RuntimeWarning: divide by zero encountered in divide\n", + ":89: RuntimeWarning: invalid value encountered in divide\n", + ":89: RuntimeWarning: divide by zero encountered in divide\n", + ":89: RuntimeWarning: invalid value encountered in divide\n", + ":89: RuntimeWarning: divide by zero encountered in divide\n", + ":89: RuntimeWarning: invalid value encountered in divide\n", + ":89: RuntimeWarning: divide by zero encountered in divide\n", + ":89: RuntimeWarning: invalid value encountered in divide\n", + ":89: RuntimeWarning: divide by zero encountered in divide\n", + ":89: RuntimeWarning: invalid value encountered in divide\n" + ] + }, + { + "name": "stdout", + "output_type": "stream", + "text": [ + "PSV Pvalb Lhx2 Glut PSV Pvalb Lhx2 Glut\n", + "N_contact_pairs = 2857\n", + "N_noncontact_cell_pairs = 2857\n", + "LDT-PCG-CS Gata3 Lhx1 Gaba LDT-PCG-CS Gata3 Lhx1 Gaba\n", + "N_contact_pairs = 123\n", + "N_noncontact_cell_pairs = 123\n", + "Endo NN PG-TRN-LRN Fat2 Glut\n" + ] + }, + { + "name": "stderr", + "output_type": "stream", + "text": [ + ":89: RuntimeWarning: divide by zero encountered in divide\n", + ":89: RuntimeWarning: invalid value encountered in divide\n" + ] + }, + { + "name": "stdout", + "output_type": "stream", + "text": [ + "N_contact_pairs = 7169\n", + "N_noncontact_cell_pairs = 7169\n" + ] + }, + { + "name": "stderr", + "output_type": "stream", + "text": [ + ":89: RuntimeWarning: divide by zero encountered in divide\n", + ":89: RuntimeWarning: invalid value encountered in divide\n" + ] + }, + { + "name": "stdout", + "output_type": "stream", + "text": [ + "N_contact_pairs = 7169\n", + "N_noncontact_cell_pairs = 7169\n" + ] + }, + { + "name": "stderr", + "output_type": "stream", + "text": [ + ":89: RuntimeWarning: divide by zero encountered in divide\n", + ":89: RuntimeWarning: invalid value encountered in divide\n", + ":89: RuntimeWarning: divide by zero encountered in divide\n", + ":89: RuntimeWarning: invalid value encountered in divide\n", + ":89: RuntimeWarning: divide by zero encountered in divide\n", + ":89: RuntimeWarning: invalid value encountered in divide\n" + ] + }, + { + "name": "stdout", + "output_type": "stream", + "text": [ + "OPC NN OPC NN\n", + "N_contact_pairs = 601\n", + "N_noncontact_cell_pairs = 601\n", + "PRNc Otp Gly-Gaba PRNc Otp Gly-Gaba\n", + "N_contact_pairs = 202\n", + "N_noncontact_cell_pairs = 202\n", + "CS-RPO Meis2 Gaba CS-RPO Meis2 Gaba\n", + "N_contact_pairs = 376\n", + "N_noncontact_cell_pairs = 376\n", + "Astro-NT NN Astro-NT NN\n" + ] + }, + { + "name": "stderr", + "output_type": "stream", + "text": [ + ":89: RuntimeWarning: divide by zero encountered in divide\n", + ":89: RuntimeWarning: invalid value encountered in divide\n" + ] + }, + { + "name": "stdout", + "output_type": "stream", + "text": [ + "N_contact_pairs = 11088\n", + "N_noncontact_cell_pairs = 11088\n" + ] + }, + { + "name": "stderr", + "output_type": "stream", + "text": [ + ":89: RuntimeWarning: divide by zero encountered in divide\n", + ":89: RuntimeWarning: invalid value encountered in divide\n", + ":89: RuntimeWarning: divide by zero encountered in divide\n", + ":89: RuntimeWarning: invalid value encountered in divide\n", + ":89: RuntimeWarning: divide by zero encountered in divide\n", + ":89: RuntimeWarning: invalid value encountered in divide\n", + ":89: RuntimeWarning: divide by zero encountered in divide\n", + ":89: RuntimeWarning: invalid value encountered in divide\n", + ":89: RuntimeWarning: divide by zero encountered in divide\n", + ":89: RuntimeWarning: invalid value encountered in divide\n" + ] + }, + { + "name": "stdout", + "output_type": "stream", + "text": [ + "POR Gata3 Gly-Gaba POR Gata3 Gly-Gaba\n", + "N_contact_pairs = 123\n", + "N_noncontact_cell_pairs = 123\n", + "NLL Gata3 Gly-Gaba NLL Gata3 Gly-Gaba\n", + "N_contact_pairs = 674\n", + "N_noncontact_cell_pairs = 674\n", + "PDTg-PCG Pax6 Gaba PDTg-PCG Pax6 Gaba\n", + "N_contact_pairs = 259\n", + "N_noncontact_cell_pairs = 259\n", + "NTS Dbh Glut NTS Dbh Glut\n", + "N_contact_pairs = 267\n", + "N_noncontact_cell_pairs = 267\n", + "NI-RPO Gata3 Nr4a2 Gaba NI-RPO Gata3 Nr4a2 Gaba\n", + "N_contact_pairs = 76\n", + "N_noncontact_cell_pairs = 76\n", + "Endo NN Oligo NN\n" + ] + }, + { + "name": "stderr", + "output_type": "stream", + "text": [ + ":89: RuntimeWarning: divide by zero encountered in divide\n", + ":89: RuntimeWarning: invalid value encountered in divide\n" + ] + }, + { + "name": "stdout", + "output_type": "stream", + "text": [ + "N_contact_pairs = 37134\n", + "N_noncontact_cell_pairs = 37134\n" + ] + }, + { + "name": "stderr", + "output_type": "stream", + "text": [ + ":89: RuntimeWarning: divide by zero encountered in divide\n", + ":89: RuntimeWarning: invalid value encountered in divide\n" + ] + }, + { + "name": "stdout", + "output_type": "stream", + "text": [ + "N_contact_pairs = 37134\n", + "N_noncontact_cell_pairs = 37134\n" + ] + }, + { + "name": "stderr", + "output_type": "stream", + "text": [ + ":89: RuntimeWarning: divide by zero encountered in divide\n", + ":89: RuntimeWarning: invalid value encountered in divide\n" + ] + }, + { + "name": "stdout", + "output_type": "stream", + "text": [ + "Peri NN Peri NN\n", + "N_contact_pairs = 228\n", + "N_noncontact_cell_pairs = 228\n", + "Astro-NT NN PG-TRN-LRN Fat2 Glut\n" + ] + }, + { + "name": "stderr", + "output_type": "stream", + "text": [ + ":89: RuntimeWarning: divide by zero encountered in divide\n", + ":89: RuntimeWarning: invalid value encountered in divide\n" + ] + }, + { + "name": "stdout", + "output_type": "stream", + "text": [ + "N_contact_pairs = 7590\n", + "N_noncontact_cell_pairs = 7590\n" + ] + }, + { + "name": "stderr", + "output_type": "stream", + "text": [ + ":89: RuntimeWarning: divide by zero encountered in divide\n", + ":89: RuntimeWarning: invalid value encountered in divide\n" + ] + }, + { + "name": "stdout", + "output_type": "stream", + "text": [ + "N_contact_pairs = 7590\n", + "N_noncontact_cell_pairs = 7590\n" + ] + }, + { + "name": "stderr", + "output_type": "stream", + "text": [ + ":89: RuntimeWarning: divide by zero encountered in divide\n", + ":89: RuntimeWarning: invalid value encountered in divide\n" + ] + }, + { + "name": "stdout", + "output_type": "stream", + "text": [ + "Astro-NT NN Microglia NN\n", + "N_contact_pairs = 3515\n", + "N_noncontact_cell_pairs = 3515\n" + ] + }, + { + "name": "stderr", + "output_type": "stream", + "text": [ + ":89: RuntimeWarning: divide by zero encountered in divide\n", + ":89: RuntimeWarning: invalid value encountered in divide\n" + ] + }, + { + "name": "stdout", + "output_type": "stream", + "text": [ + "N_contact_pairs = 3515\n", + "N_noncontact_cell_pairs = 3515\n", + "CS-PRNr-DR En1 Sox2 Gaba CS-PRNr-DR En1 Sox2 Gaba\n", + "N_contact_pairs = 107\n", + "N_noncontact_cell_pairs = 107\n", + "LDT-DTN Gata3 Nfix Gaba LDT-DTN Gata3 Nfix Gaba\n", + "N_contact_pairs = 112\n", + "N_noncontact_cell_pairs = 112\n", + "PAG-ND-PCG Onecut1 Gaba PAG-ND-PCG Onecut1 Gaba\n" + ] + }, + { + "name": "stderr", + "output_type": "stream", + "text": [ + ":89: RuntimeWarning: divide by zero encountered in divide\n", + ":89: RuntimeWarning: invalid value encountered in divide\n", + ":89: RuntimeWarning: divide by zero encountered in divide\n", + ":89: RuntimeWarning: invalid value encountered in divide\n", + ":89: RuntimeWarning: divide by zero encountered in divide\n", + ":89: RuntimeWarning: invalid value encountered in divide\n", + ":89: RuntimeWarning: divide by zero encountered in divide\n", + ":89: RuntimeWarning: invalid value encountered in divide\n" + ] + }, + { + "name": "stdout", + "output_type": "stream", + "text": [ + "N_contact_pairs = 96\n", + "N_noncontact_cell_pairs = 96\n", + "Endo NN NLL Gata3 Gly-Gaba\n", + "N_contact_pairs = 1294\n", + "N_noncontact_cell_pairs = 1294\n" + ] + }, + { + "name": "stderr", + "output_type": "stream", + "text": [ + ":89: RuntimeWarning: divide by zero encountered in divide\n", + ":89: RuntimeWarning: invalid value encountered in divide\n", + ":89: RuntimeWarning: divide by zero encountered in divide\n", + ":89: RuntimeWarning: invalid value encountered in divide\n" + ] + }, + { + "name": "stdout", + "output_type": "stream", + "text": [ + "N_contact_pairs = 1294\n", + "N_noncontact_cell_pairs = 1294\n", + "Peri NN VLMC NN\n", + "N_contact_pairs = 186\n", + "N_noncontact_cell_pairs = 186\n", + "N_contact_pairs = 186\n", + "N_noncontact_cell_pairs = 186\n", + "OPC NN Oligo NN\n" + ] + }, + { + "name": "stderr", + "output_type": "stream", + "text": [ + ":89: RuntimeWarning: divide by zero encountered in divide\n", + ":89: RuntimeWarning: invalid value encountered in divide\n", + ":89: RuntimeWarning: divide by zero encountered in divide\n", + ":89: RuntimeWarning: invalid value encountered in divide\n" + ] + }, + { + "name": "stdout", + "output_type": "stream", + "text": [ + "N_contact_pairs = 9305\n", + "N_noncontact_cell_pairs = 9305\n" + ] + }, + { + "name": "stderr", + "output_type": "stream", + "text": [ + ":89: RuntimeWarning: divide by zero encountered in divide\n", + ":89: RuntimeWarning: invalid value encountered in divide\n" + ] + }, + { + "name": "stdout", + "output_type": "stream", + "text": [ + "N_contact_pairs = 9305\n", + "N_noncontact_cell_pairs = 9305\n" + ] + }, + { + "name": "stderr", + "output_type": "stream", + "text": [ + ":89: RuntimeWarning: divide by zero encountered in divide\n", + ":89: RuntimeWarning: invalid value encountered in divide\n", + ":89: RuntimeWarning: divide by zero encountered in divide\n", + ":89: RuntimeWarning: invalid value encountered in divide\n" + ] + }, + { + "name": "stdout", + "output_type": "stream", + "text": [ + "CUN-PPN Evx2 Meis2 Glut CUN-PPN Evx2 Meis2 Glut\n", + "N_contact_pairs = 97\n", + "N_noncontact_cell_pairs = 97\n", + "Astro-NT NN PB Evx2 Glut\n", + "N_contact_pairs = 1270\n", + "N_noncontact_cell_pairs = 1270\n" + ] + }, + { + "name": "stderr", + "output_type": "stream", + "text": [ + ":89: RuntimeWarning: divide by zero encountered in divide\n", + ":89: RuntimeWarning: invalid value encountered in divide\n", + ":89: RuntimeWarning: divide by zero encountered in divide\n", + ":89: RuntimeWarning: invalid value encountered in divide\n" + ] + }, + { + "name": "stdout", + "output_type": "stream", + "text": [ + "N_contact_pairs = 1270\n", + "N_noncontact_cell_pairs = 1270\n", + "Microglia NN Microglia NN\n", + "N_contact_pairs = 363\n", + "N_noncontact_cell_pairs = 363\n", + "BAM NN Peri NN\n", + "N_contact_pairs = 67\n", + "N_noncontact_cell_pairs = 67\n" + ] + }, + { + "name": "stderr", + "output_type": "stream", + "text": [ + ":89: RuntimeWarning: divide by zero encountered in divide\n", + ":89: RuntimeWarning: invalid value encountered in divide\n", + ":89: RuntimeWarning: divide by zero encountered in divide\n", + ":89: RuntimeWarning: invalid value encountered in divide\n", + ":89: RuntimeWarning: divide by zero encountered in divide\n", + ":89: RuntimeWarning: invalid value encountered in divide\n", + ":89: RuntimeWarning: divide by zero encountered in divide\n", + ":89: RuntimeWarning: invalid value encountered in divide\n", + ":89: RuntimeWarning: divide by zero encountered in divide\n", + ":89: RuntimeWarning: invalid value encountered in divide\n", + ":89: RuntimeWarning: divide by zero encountered in divide\n", + ":89: RuntimeWarning: invalid value encountered in divide\n" + ] + }, + { + "name": "stdout", + "output_type": "stream", + "text": [ + "N_contact_pairs = 67\n", + "N_noncontact_cell_pairs = 67\n", + "LDT-PCG St18 Gaba LDT-PCG St18 Gaba\n", + "N_contact_pairs = 59\n", + "N_noncontact_cell_pairs = 59\n", + "B-PB Nr4a2 Glut B-PB Nr4a2 Glut\n", + "N_contact_pairs = 43\n", + "N_noncontact_cell_pairs = 43\n", + "PB Pax5 Glut PB Pax5 Glut\n", + "N_contact_pairs = 33\n", + "N_noncontact_cell_pairs = 33\n", + "Endo NN NLL-SOC Spp1 Glut\n", + "N_contact_pairs = 558\n", + "N_noncontact_cell_pairs = 558\n" + ] + }, + { + "name": "stderr", + "output_type": "stream", + "text": [ + ":89: RuntimeWarning: divide by zero encountered in divide\n", + ":89: RuntimeWarning: invalid value encountered in divide\n", + ":89: RuntimeWarning: divide by zero encountered in divide\n", + ":89: RuntimeWarning: invalid value encountered in divide\n" + ] + }, + { + "name": "stdout", + "output_type": "stream", + "text": [ + "N_contact_pairs = 558\n", + "N_noncontact_cell_pairs = 558\n", + "Astro-NT NN Peri NN\n", + "N_contact_pairs = 2554\n", + "N_noncontact_cell_pairs = 2554\n" + ] + }, + { + "name": "stderr", + "output_type": "stream", + "text": [ + ":89: RuntimeWarning: divide by zero encountered in divide\n", + ":89: RuntimeWarning: invalid value encountered in divide\n" + ] + }, + { + "name": "stdout", + "output_type": "stream", + "text": [ + "N_contact_pairs = 2554\n", + "N_noncontact_cell_pairs = 2554\n", + "Astro-NT NN OPC NN\n" + ] + }, + { + "name": "stderr", + "output_type": "stream", + "text": [ + ":89: RuntimeWarning: divide by zero encountered in divide\n", + ":89: RuntimeWarning: invalid value encountered in divide\n" + ] + }, + { + "name": "stdout", + "output_type": "stream", + "text": [ + "N_contact_pairs = 4153\n", + "N_noncontact_cell_pairs = 4153\n" + ] + }, + { + "name": "stderr", + "output_type": "stream", + "text": [ + ":89: RuntimeWarning: divide by zero encountered in divide\n", + ":89: RuntimeWarning: invalid value encountered in divide\n" + ] + }, + { + "name": "stdout", + "output_type": "stream", + "text": [ + "N_contact_pairs = 4153\n", + "N_noncontact_cell_pairs = 4153\n", + "PDTg Otp Shroom3 Gaba PDTg Otp Shroom3 Gaba\n", + "N_contact_pairs = 31\n", + "N_noncontact_cell_pairs = 31\n", + "NLL-SOC Spp1 Glut NLL-SOC Spp1 Glut\n", + "N_contact_pairs = 159\n", + "N_noncontact_cell_pairs = 159\n" + ] + }, + { + "name": "stderr", + "output_type": "stream", + "text": [ + ":89: RuntimeWarning: divide by zero encountered in divide\n", + ":89: RuntimeWarning: invalid value encountered in divide\n", + ":89: RuntimeWarning: divide by zero encountered in divide\n", + ":89: RuntimeWarning: invalid value encountered in divide\n", + ":89: RuntimeWarning: divide by zero encountered in divide\n", + ":89: RuntimeWarning: invalid value encountered in divide\n" + ] + }, + { + "name": "stdout", + "output_type": "stream", + "text": [ + "Astro-NT NN NLL Gata3 Gly-Gaba\n", + "N_contact_pairs = 1201\n", + "N_noncontact_cell_pairs = 1201\n" + ] + }, + { + "name": "stderr", + "output_type": "stream", + "text": [ + ":89: RuntimeWarning: divide by zero encountered in divide\n", + ":89: RuntimeWarning: invalid value encountered in divide\n", + ":89: RuntimeWarning: divide by zero encountered in divide\n", + ":89: RuntimeWarning: invalid value encountered in divide\n", + ":89: RuntimeWarning: divide by zero encountered in divide\n", + ":89: RuntimeWarning: invalid value encountered in divide\n", + ":89: RuntimeWarning: divide by zero encountered in divide\n", + ":89: RuntimeWarning: invalid value encountered in divide\n" + ] + }, + { + "name": "stdout", + "output_type": "stream", + "text": [ + "N_contact_pairs = 1201\n", + "N_noncontact_cell_pairs = 1201\n", + "HB Calcb Chol HB Calcb Chol\n", + "N_contact_pairs = 71\n", + "N_noncontact_cell_pairs = 71\n", + "CS-PRNr-PCG Tmem163 Otp Gaba CS-PRNr-PCG Tmem163 Otp Gaba\n", + "N_contact_pairs = 98\n", + "N_noncontact_cell_pairs = 98\n", + "Endo NN PSV Pvalb Lhx2 Glut\n", + "N_contact_pairs = 2363\n", + "N_noncontact_cell_pairs = 2363\n", + "N_contact_pairs = 2363\n", + "N_noncontact_cell_pairs = 2363\n" + ] + }, + { + "name": "stderr", + "output_type": "stream", + "text": [ + ":89: RuntimeWarning: divide by zero encountered in divide\n", + ":89: RuntimeWarning: invalid value encountered in divide\n", + ":89: RuntimeWarning: divide by zero encountered in divide\n", + ":89: RuntimeWarning: invalid value encountered in divide\n" + ] + }, + { + "name": "stdout", + "output_type": "stream", + "text": [ + "CS-RPO Meis2 Gaba PRNc-NI-SG-RPO Vsx2 Nr4a2 Glut\n", + "N_contact_pairs = 119\n", + "N_noncontact_cell_pairs = 119\n", + "N_contact_pairs = 119\n", + "N_noncontact_cell_pairs = 119\n", + "Endo NN OPC NN\n", + "N_contact_pairs = 3576\n", + "N_noncontact_cell_pairs = 3576\n" + ] + }, + { + "name": "stderr", + "output_type": "stream", + "text": [ + ":89: RuntimeWarning: divide by zero encountered in divide\n", + ":89: RuntimeWarning: invalid value encountered in divide\n", + ":89: RuntimeWarning: divide by zero encountered in divide\n", + ":89: RuntimeWarning: invalid value encountered in divide\n", + ":89: RuntimeWarning: divide by zero encountered in divide\n", + ":89: RuntimeWarning: invalid value encountered in divide\n" + ] + }, + { + "name": "stdout", + "output_type": "stream", + "text": [ + "N_contact_pairs = 3576\n", + "N_noncontact_cell_pairs = 3576\n", + "Endo NN Microglia NN\n" + ] + }, + { + "name": "stderr", + "output_type": "stream", + "text": [ + ":89: RuntimeWarning: divide by zero encountered in divide\n", + ":89: RuntimeWarning: invalid value encountered in divide\n" + ] + }, + { + "name": "stdout", + "output_type": "stream", + "text": [ + "N_contact_pairs = 2976\n", + "N_noncontact_cell_pairs = 2976\n" + ] + }, + { + "name": "stderr", + "output_type": "stream", + "text": [ + ":89: RuntimeWarning: divide by zero encountered in divide\n", + ":89: RuntimeWarning: invalid value encountered in divide\n" + ] + }, + { + "name": "stdout", + "output_type": "stream", + "text": [ + "N_contact_pairs = 2976\n", + "N_noncontact_cell_pairs = 2976\n", + "Oligo NN Peri NN\n" + ] + }, + { + "name": "stderr", + "output_type": "stream", + "text": [ + ":89: RuntimeWarning: divide by zero encountered in divide\n", + ":89: RuntimeWarning: invalid value encountered in divide\n" + ] + }, + { + "name": "stdout", + "output_type": "stream", + "text": [ + "N_contact_pairs = 5361\n", + "N_noncontact_cell_pairs = 5361\n" + ] + }, + { + "name": "stderr", + "output_type": "stream", + "text": [ + ":89: RuntimeWarning: divide by zero encountered in divide\n", + ":89: RuntimeWarning: invalid value encountered in divide\n" + ] + }, + { + "name": "stdout", + "output_type": "stream", + "text": [ + "N_contact_pairs = 5361\n", + "N_noncontact_cell_pairs = 5361\n" + ] + }, + { + "name": "stderr", + "output_type": "stream", + "text": [ + ":89: RuntimeWarning: divide by zero encountered in divide\n", + ":89: RuntimeWarning: invalid value encountered in divide\n" + ] + }, + { + "name": "stdout", + "output_type": "stream", + "text": [ + "Astro-NT NN PB Sst Gly-Gaba\n", + "N_contact_pairs = 136\n", + "N_noncontact_cell_pairs = 136\n" + ] + }, + { + "name": "stderr", + "output_type": "stream", + "text": [ + ":89: RuntimeWarning: divide by zero encountered in divide\n", + ":89: RuntimeWarning: invalid value encountered in divide\n", + ":89: RuntimeWarning: divide by zero encountered in divide\n", + ":89: RuntimeWarning: invalid value encountered in divide\n" + ] + }, + { + "name": "stdout", + "output_type": "stream", + "text": [ + "N_contact_pairs = 136\n", + "N_noncontact_cell_pairs = 136\n", + "Oligo NN PRP-NI-PRNc-GRN Otp Glut\n", + "N_contact_pairs = 680\n", + "N_noncontact_cell_pairs = 680\n" + ] + }, + { + "name": "stderr", + "output_type": "stream", + "text": [ + ":89: RuntimeWarning: divide by zero encountered in divide\n", + ":89: RuntimeWarning: invalid value encountered in divide\n" + ] + }, + { + "name": "stdout", + "output_type": "stream", + "text": [ + "N_contact_pairs = 680\n", + "N_noncontact_cell_pairs = 680\n", + "MY Lhx1 Gly-Gaba MY Lhx1 Gly-Gaba\n", + "N_contact_pairs = 95\n", + "N_noncontact_cell_pairs = 95\n" + ] + }, + { + "name": "stderr", + "output_type": "stream", + "text": [ + ":89: RuntimeWarning: divide by zero encountered in divide\n", + ":89: RuntimeWarning: invalid value encountered in divide\n", + ":89: RuntimeWarning: divide by zero encountered in divide\n", + ":89: RuntimeWarning: invalid value encountered in divide\n", + ":89: RuntimeWarning: divide by zero encountered in divide\n", + ":89: RuntimeWarning: invalid value encountered in divide\n", + ":89: RuntimeWarning: divide by zero encountered in divide\n", + ":89: RuntimeWarning: invalid value encountered in divide\n", + ":89: RuntimeWarning: divide by zero encountered in divide\n", + ":89: RuntimeWarning: invalid value encountered in divide\n", + ":89: RuntimeWarning: divide by zero encountered in divide\n", + ":89: RuntimeWarning: invalid value encountered in divide\n", + ":89: RuntimeWarning: divide by zero encountered in divide\n", + ":89: RuntimeWarning: invalid value encountered in divide\n" + ] + }, + { + "name": "stdout", + "output_type": "stream", + "text": [ + "CS-RPO Meis2 Gaba Peri NN\n", + "N_contact_pairs = 132\n", + "N_noncontact_cell_pairs = 132\n", + "N_contact_pairs = 132\n", + "N_noncontact_cell_pairs = 132\n", + "PRNc-NI-SG-RPO Vsx2 Nr4a2 Glut PRNc-NI-SG-RPO Vsx2 Nr4a2 Glut\n", + "N_contact_pairs = 101\n", + "N_noncontact_cell_pairs = 101\n", + "CS-PRNr-PCG Tmem163 Otp Gaba PCG-PRNr Vsx2 Nkx6-1 Glut\n", + "N_contact_pairs = 101\n", + "N_noncontact_cell_pairs = 101\n", + "N_contact_pairs = 101\n", + "N_noncontact_cell_pairs = 101\n", + "Oligo NN PPN-CUN-PCG Otp En1 Gaba\n", + "N_contact_pairs = 275\n", + "N_noncontact_cell_pairs = 275\n" + ] + }, + { + "name": "stderr", + "output_type": "stream", + "text": [ + ":89: RuntimeWarning: divide by zero encountered in divide\n", + ":89: RuntimeWarning: invalid value encountered in divide\n" + ] + }, + { + "name": "stdout", + "output_type": "stream", + "text": [ + "N_contact_pairs = 275\n", + "N_noncontact_cell_pairs = 275\n", + "Microglia NN Peri NN\n" + ] + }, + { + "name": "stderr", + "output_type": "stream", + "text": [ + ":89: RuntimeWarning: divide by zero encountered in divide\n", + ":89: RuntimeWarning: invalid value encountered in divide\n", + ":89: RuntimeWarning: divide by zero encountered in divide\n", + ":89: RuntimeWarning: invalid value encountered in divide\n", + ":89: RuntimeWarning: divide by zero encountered in divide\n", + ":89: RuntimeWarning: invalid value encountered in divide\n" + ] + }, + { + "name": "stdout", + "output_type": "stream", + "text": [ + "N_contact_pairs = 459\n", + "N_noncontact_cell_pairs = 459\n", + "N_contact_pairs = 459\n", + "N_noncontact_cell_pairs = 459\n", + "Astro-NT NN VLMC NN\n", + "N_contact_pairs = 1144\n", + "N_noncontact_cell_pairs = 1144\n" + ] + }, + { + "name": "stderr", + "output_type": "stream", + "text": [ + ":89: RuntimeWarning: divide by zero encountered in divide\n", + ":89: RuntimeWarning: invalid value encountered in divide\n" + ] + }, + { + "name": "stdout", + "output_type": "stream", + "text": [ + "N_contact_pairs = 1144\n", + "N_noncontact_cell_pairs = 1144\n", + "PB-NTS Phox2b Ebf3 Lmx1b Glut PB-NTS Phox2b Ebf3 Lmx1b Glut\n", + "N_contact_pairs = 108\n", + "N_noncontact_cell_pairs = 108\n", + "CS-PRNr-DR En1 Sox2 Gaba Oligo NN\n" + ] + }, + { + "name": "stderr", + "output_type": "stream", + "text": [ + ":89: RuntimeWarning: divide by zero encountered in divide\n", + ":89: RuntimeWarning: invalid value encountered in divide\n", + ":89: RuntimeWarning: divide by zero encountered in divide\n", + ":89: RuntimeWarning: invalid value encountered in divide\n" + ] + }, + { + "name": "stdout", + "output_type": "stream", + "text": [ + "N_contact_pairs = 558\n", + "N_noncontact_cell_pairs = 558\n" + ] + }, + { + "name": "stderr", + "output_type": "stream", + "text": [ + ":89: RuntimeWarning: divide by zero encountered in divide\n", + ":89: RuntimeWarning: invalid value encountered in divide\n" + ] + }, + { + "name": "stdout", + "output_type": "stream", + "text": [ + "N_contact_pairs = 558\n", + "N_noncontact_cell_pairs = 558\n", + "Astro-NT NN LDT-PCG St18 Gaba\n" + ] + }, + { + "name": "stderr", + "output_type": "stream", + "text": [ + ":89: RuntimeWarning: divide by zero encountered in divide\n", + ":89: RuntimeWarning: invalid value encountered in divide\n", + ":89: RuntimeWarning: divide by zero encountered in divide\n", + ":89: RuntimeWarning: invalid value encountered in divide\n" + ] + }, + { + "name": "stdout", + "output_type": "stream", + "text": [ + "N_contact_pairs = 361\n", + "N_noncontact_cell_pairs = 361\n", + "N_contact_pairs = 361\n", + "N_noncontact_cell_pairs = 361\n" + ] + }, + { + "name": "stderr", + "output_type": "stream", + "text": [ + ":89: RuntimeWarning: divide by zero encountered in divide\n", + ":89: RuntimeWarning: invalid value encountered in divide\n", + ":89: RuntimeWarning: divide by zero encountered in divide\n", + ":89: RuntimeWarning: invalid value encountered in divide\n", + ":89: RuntimeWarning: divide by zero encountered in divide\n", + ":89: RuntimeWarning: invalid value encountered in divide\n" + ] + }, + { + "name": "stdout", + "output_type": "stream", + "text": [ + "PPN-CUN-PCG Otp En1 Gaba PPN-CUN-PCG Otp En1 Gaba\n", + "N_contact_pairs = 48\n", + "N_noncontact_cell_pairs = 48\n", + "Endo NN LDT-PCG-CS Gata3 Lhx1 Gaba\n", + "N_contact_pairs = 277\n", + "N_noncontact_cell_pairs = 277\n", + "N_contact_pairs = 277\n", + "N_noncontact_cell_pairs = 277\n", + "LDT-PCG St18 Gaba LDT-PCG Vsx2 Lhx4 Glut\n", + "N_contact_pairs = 183\n", + "N_noncontact_cell_pairs = 183\n", + "N_contact_pairs = 183\n", + "N_noncontact_cell_pairs = 183\n", + "Oligo NN SPVO Mafa Meis2 Glut\n" + ] + }, + { + "name": "stderr", + "output_type": "stream", + "text": [ + ":89: RuntimeWarning: divide by zero encountered in divide\n", + ":89: RuntimeWarning: invalid value encountered in divide\n", + ":89: RuntimeWarning: divide by zero encountered in divide\n", + ":89: RuntimeWarning: invalid value encountered in divide\n", + ":89: RuntimeWarning: divide by zero encountered in divide\n", + ":89: RuntimeWarning: invalid value encountered in divide\n" + ] + }, + { + "name": "stdout", + "output_type": "stream", + "text": [ + "N_contact_pairs = 131\n", + "N_noncontact_cell_pairs = 131\n" + ] + }, + { + "name": "stderr", + "output_type": "stream", + "text": [ + ":89: RuntimeWarning: divide by zero encountered in divide\n", + ":89: RuntimeWarning: invalid value encountered in divide\n" + ] + }, + { + "name": "stdout", + "output_type": "stream", + "text": [ + "N_contact_pairs = 131\n", + "N_noncontact_cell_pairs = 131\n", + "Astro-NT NN PSV Lmx1a Trpv6 Glut\n" + ] + }, + { + "name": "stderr", + "output_type": "stream", + "text": [ + ":89: RuntimeWarning: divide by zero encountered in divide\n", + ":89: RuntimeWarning: invalid value encountered in divide\n", + ":89: RuntimeWarning: divide by zero encountered in divide\n", + ":89: RuntimeWarning: invalid value encountered in divide\n" + ] + }, + { + "name": "stdout", + "output_type": "stream", + "text": [ + "N_contact_pairs = 71\n", + "N_noncontact_cell_pairs = 71\n", + "N_contact_pairs = 71\n", + "N_noncontact_cell_pairs = 71\n", + "Astro-NT NN PB-PSV Phox2b Glut\n" + ] + }, + { + "name": "stderr", + "output_type": "stream", + "text": [ + ":89: RuntimeWarning: divide by zero encountered in divide\n", + ":89: RuntimeWarning: invalid value encountered in divide\n", + ":89: RuntimeWarning: divide by zero encountered in divide\n", + ":89: RuntimeWarning: invalid value encountered in divide\n" + ] + }, + { + "name": "stdout", + "output_type": "stream", + "text": [ + "N_contact_pairs = 52\n", + "N_noncontact_cell_pairs = 52\n", + "N_contact_pairs = 52\n", + "N_noncontact_cell_pairs = 52\n", + "Oligo NN POR Spp1 Gly-Gaba\n" + ] + }, + { + "name": "stderr", + "output_type": "stream", + "text": [ + ":89: RuntimeWarning: divide by zero encountered in divide\n", + ":89: RuntimeWarning: invalid value encountered in divide\n" + ] + }, + { + "name": "stdout", + "output_type": "stream", + "text": [ + "N_contact_pairs = 95\n", + "N_noncontact_cell_pairs = 95\n" + ] + }, + { + "name": "stderr", + "output_type": "stream", + "text": [ + ":89: RuntimeWarning: divide by zero encountered in divide\n", + ":89: RuntimeWarning: invalid value encountered in divide\n" + ] + }, + { + "name": "stdout", + "output_type": "stream", + "text": [ + "N_contact_pairs = 95\n", + "N_noncontact_cell_pairs = 95\n" + ] + }, + { + "name": "stderr", + "output_type": "stream", + "text": [ + ":89: RuntimeWarning: divide by zero encountered in divide\n", + ":89: RuntimeWarning: invalid value encountered in divide\n" + ] + }, + { + "name": "stdout", + "output_type": "stream", + "text": [ + "Striatum\n" + ] + }, + { + "name": "stderr", + "output_type": "stream", + "text": [ + ":25: ImplicitModificationWarning: Trying to modify attribute `.obs` of view, initializing view as actual.\n", + ":28: ImplicitModificationWarning: Trying to modify attribute `.obs` of view, initializing view as actual.\n" + ] + }, + { + "name": "stdout", + "output_type": "stream", + "text": [ + "OT D3 Folh1 Gaba OT D3 Folh1 Gaba\n", + "N_contact_pairs = 103858\n", + "N_noncontact_cell_pairs = 60726\n" + ] + }, + { + "name": "stderr", + "output_type": "stream", + "text": [ + ":89: RuntimeWarning: divide by zero encountered in divide\n", + ":89: RuntimeWarning: invalid value encountered in divide\n" + ] + }, + { + "name": "stdout", + "output_type": "stream", + "text": [ + "STR-PAL Chst9 Gaba STR-PAL Chst9 Gaba\n", + "N_contact_pairs = 26835\n", + "N_noncontact_cell_pairs = 26835\n" + ] + }, + { + "name": "stderr", + "output_type": "stream", + "text": [ + ":89: RuntimeWarning: divide by zero encountered in divide\n", + ":89: RuntimeWarning: invalid value encountered in divide\n" + ] + }, + { + "name": "stdout", + "output_type": "stream", + "text": [ + "Ependymal NN Ependymal NN\n", + "N_contact_pairs = 9098\n", + "N_noncontact_cell_pairs = 9098\n" + ] + }, + { + "name": "stderr", + "output_type": "stream", + "text": [ + ":89: RuntimeWarning: divide by zero encountered in divide\n", + ":89: RuntimeWarning: invalid value encountered in divide\n", + ":89: RuntimeWarning: divide by zero encountered in divide\n", + ":89: RuntimeWarning: invalid value encountered in divide\n" + ] + }, + { + "name": "stdout", + "output_type": "stream", + "text": [ + "SMC NN SMC NN\n", + "N_contact_pairs = 2279\n", + "N_noncontact_cell_pairs = 2279\n", + "Oligo NN Oligo NN\n", + "N_contact_pairs = 43565\n", + "N_noncontact_cell_pairs = 43565\n" + ] + }, + { + "name": "stderr", + "output_type": "stream", + "text": [ + ":89: RuntimeWarning: divide by zero encountered in divide\n", + ":89: RuntimeWarning: invalid value encountered in divide\n" + ] + }, + { + "name": "stdout", + "output_type": "stream", + "text": [ + "STR D1 Sema5a Gaba STR D1 Sema5a Gaba\n", + "N_contact_pairs = 11477\n", + "N_noncontact_cell_pairs = 11477\n" + ] + }, + { + "name": "stderr", + "output_type": "stream", + "text": [ + ":89: RuntimeWarning: divide by zero encountered in divide\n", + ":89: RuntimeWarning: invalid value encountered in divide\n" + ] + }, + { + "name": "stdout", + "output_type": "stream", + "text": [ + "Endo NN SMC NN\n", + "N_contact_pairs = 3985\n", + "N_noncontact_cell_pairs = 3985\n" + ] + }, + { + "name": "stderr", + "output_type": "stream", + "text": [ + ":89: RuntimeWarning: divide by zero encountered in divide\n", + ":89: RuntimeWarning: invalid value encountered in divide\n" + ] + }, + { + "name": "stdout", + "output_type": "stream", + "text": [ + "N_contact_pairs = 3985\n", + "N_noncontact_cell_pairs = 3985\n" + ] + }, + { + "name": "stderr", + "output_type": "stream", + "text": [ + ":89: RuntimeWarning: divide by zero encountered in divide\n", + ":89: RuntimeWarning: invalid value encountered in divide\n", + ":89: RuntimeWarning: divide by zero encountered in divide\n", + ":89: RuntimeWarning: invalid value encountered in divide\n" + ] + }, + { + "name": "stdout", + "output_type": "stream", + "text": [ + "CHOR NN CHOR NN\n", + "N_contact_pairs = 6939\n", + "N_noncontact_cell_pairs = 153\n", + "VLMC NN VLMC NN\n", + "N_contact_pairs = 2550\n", + "N_noncontact_cell_pairs = 2550\n" + ] + }, + { + "name": "stderr", + "output_type": "stream", + "text": [ + ":89: RuntimeWarning: divide by zero encountered in divide\n", + ":89: RuntimeWarning: invalid value encountered in divide\n", + ":89: RuntimeWarning: divide by zero encountered in divide\n", + ":89: RuntimeWarning: invalid value encountered in divide\n" + ] + }, + { + "name": "stdout", + "output_type": "stream", + "text": [ + "SMC NN VLMC NN\n", + "N_contact_pairs = 1840\n", + "N_noncontact_cell_pairs = 1840\n", + "N_contact_pairs = 1840\n", + "N_noncontact_cell_pairs = 1840\n" + ] + }, + { + "name": "stderr", + "output_type": "stream", + "text": [ + ":89: RuntimeWarning: divide by zero encountered in divide\n", + ":89: RuntimeWarning: invalid value encountered in divide\n" + ] + }, + { + "name": "stdout", + "output_type": "stream", + "text": [ + "Endo NN VLMC NN\n", + "N_contact_pairs = 3820\n", + "N_noncontact_cell_pairs = 3820\n" + ] + }, + { + "name": "stderr", + "output_type": "stream", + "text": [ + ":89: RuntimeWarning: divide by zero encountered in divide\n", + ":89: RuntimeWarning: invalid value encountered in divide\n" + ] + }, + { + "name": "stdout", + "output_type": "stream", + "text": [ + "N_contact_pairs = 3820\n", + "N_noncontact_cell_pairs = 3820\n" + ] + }, + { + "name": "stderr", + "output_type": "stream", + "text": [ + ":89: RuntimeWarning: divide by zero encountered in divide\n", + ":89: RuntimeWarning: invalid value encountered in divide\n" + ] + }, + { + "name": "stdout", + "output_type": "stream", + "text": [ + "STR D1 Gaba STR D1 Gaba\n", + "N_contact_pairs = 144322\n", + "N_noncontact_cell_pairs = 144322\n" + ] + }, + { + "name": "stderr", + "output_type": "stream", + "text": [ + ":89: RuntimeWarning: divide by zero encountered in divide\n", + ":89: RuntimeWarning: invalid value encountered in divide\n" + ] + }, + { + "name": "stdout", + "output_type": "stream", + "text": [ + "BAM NN VLMC NN\n", + "N_contact_pairs = 993\n", + "N_noncontact_cell_pairs = 993\n", + "N_contact_pairs = 993\n", + "N_noncontact_cell_pairs = 993\n", + "Endo NN Peri NN\n" + ] + }, + { + "name": "stderr", + "output_type": "stream", + "text": [ + ":89: RuntimeWarning: divide by zero encountered in divide\n", + ":89: RuntimeWarning: invalid value encountered in divide\n", + ":89: RuntimeWarning: divide by zero encountered in divide\n", + ":89: RuntimeWarning: invalid value encountered in divide\n" + ] + }, + { + "name": "stdout", + "output_type": "stream", + "text": [ + "N_contact_pairs = 5421\n", + "N_noncontact_cell_pairs = 5421\n" + ] + }, + { + "name": "stderr", + "output_type": "stream", + "text": [ + ":89: RuntimeWarning: divide by zero encountered in divide\n", + ":89: RuntimeWarning: invalid value encountered in divide\n" + ] + }, + { + "name": "stdout", + "output_type": "stream", + "text": [ + "N_contact_pairs = 5421\n", + "N_noncontact_cell_pairs = 5421\n" + ] + }, + { + "name": "stderr", + "output_type": "stream", + "text": [ + ":89: RuntimeWarning: divide by zero encountered in divide\n", + ":89: RuntimeWarning: invalid value encountered in divide\n" + ] + }, + { + "name": "stdout", + "output_type": "stream", + "text": [ + "STR D2 Gaba STR D2 Gaba\n", + "N_contact_pairs = 108887\n", + "N_noncontact_cell_pairs = 108887\n" + ] + }, + { + "name": "stderr", + "output_type": "stream", + "text": [ + ":89: RuntimeWarning: divide by zero encountered in divide\n", + ":89: RuntimeWarning: invalid value encountered in divide\n" + ] + }, + { + "name": "stdout", + "output_type": "stream", + "text": [ + "Endo NN Endo NN\n", + "N_contact_pairs = 14964\n", + "N_noncontact_cell_pairs = 14964\n" + ] + }, + { + "name": "stderr", + "output_type": "stream", + "text": [ + ":89: RuntimeWarning: divide by zero encountered in divide\n", + ":89: RuntimeWarning: invalid value encountered in divide\n" + ] + }, + { + "name": "stdout", + "output_type": "stream", + "text": [ + "BAM NN Endo NN\n", + "N_contact_pairs = 1366\n", + "N_noncontact_cell_pairs = 1366\n" + ] + }, + { + "name": "stderr", + "output_type": "stream", + "text": [ + ":89: RuntimeWarning: divide by zero encountered in divide\n", + ":89: RuntimeWarning: invalid value encountered in divide\n" + ] + }, + { + "name": "stdout", + "output_type": "stream", + "text": [ + "N_contact_pairs = 1366\n", + "N_noncontact_cell_pairs = 1366\n", + "CHOR NN VLMC NN\n", + "N_contact_pairs = 1769\n", + "N_noncontact_cell_pairs = 1769\n" + ] + }, + { + "name": "stderr", + "output_type": "stream", + "text": [ + ":89: RuntimeWarning: divide by zero encountered in divide\n", + ":89: RuntimeWarning: invalid value encountered in divide\n", + ":89: RuntimeWarning: divide by zero encountered in divide\n", + ":89: RuntimeWarning: invalid value encountered in divide\n", + ":89: RuntimeWarning: divide by zero encountered in divide\n", + ":89: RuntimeWarning: invalid value encountered in divide\n" + ] + }, + { + "name": "stdout", + "output_type": "stream", + "text": [ + "N_contact_pairs = 1769\n", + "N_noncontact_cell_pairs = 1769\n", + "BAM NN SMC NN\n", + "N_contact_pairs = 491\n", + "N_noncontact_cell_pairs = 491\n", + "N_contact_pairs = 491\n", + "N_noncontact_cell_pairs = 491\n", + "Astro-TE NN Astro-TE NN\n" + ] + }, + { + "name": "stderr", + "output_type": "stream", + "text": [ + ":89: RuntimeWarning: divide by zero encountered in divide\n", + ":89: RuntimeWarning: invalid value encountered in divide\n", + ":89: RuntimeWarning: divide by zero encountered in divide\n", + ":89: RuntimeWarning: invalid value encountered in divide\n" + ] + }, + { + "name": "stdout", + "output_type": "stream", + "text": [ + "N_contact_pairs = 16322\n", + "N_noncontact_cell_pairs = 16322\n" + ] + }, + { + "name": "stderr", + "output_type": "stream", + "text": [ + ":89: RuntimeWarning: divide by zero encountered in divide\n", + ":89: RuntimeWarning: invalid value encountered in divide\n" + ] + }, + { + "name": "stdout", + "output_type": "stream", + "text": [ + "Astro-TE NN Ependymal NN\n", + "N_contact_pairs = 5074\n", + "N_noncontact_cell_pairs = 5074\n" + ] + }, + { + "name": "stderr", + "output_type": "stream", + "text": [ + ":89: RuntimeWarning: divide by zero encountered in divide\n", + ":89: RuntimeWarning: invalid value encountered in divide\n" + ] + }, + { + "name": "stdout", + "output_type": "stream", + "text": [ + "N_contact_pairs = 5074\n", + "N_noncontact_cell_pairs = 5074\n" + ] + }, + { + "name": "stderr", + "output_type": "stream", + "text": [ + ":89: RuntimeWarning: divide by zero encountered in divide\n", + ":89: RuntimeWarning: invalid value encountered in divide\n", + ":89: RuntimeWarning: divide by zero encountered in divide\n", + ":89: RuntimeWarning: invalid value encountered in divide\n" + ] + }, + { + "name": "stdout", + "output_type": "stream", + "text": [ + "TRS-BAC Sln Glut TRS-BAC Sln Glut\n", + "N_contact_pairs = 2166\n", + "N_noncontact_cell_pairs = 2166\n", + "STR D1 Gaba STR D2 Gaba\n", + "N_contact_pairs = 215661\n", + "N_noncontact_cell_pairs = 215661\n" + ] + }, + { + "name": "stderr", + "output_type": "stream", + "text": [ + ":89: RuntimeWarning: divide by zero encountered in divide\n", + ":89: RuntimeWarning: invalid value encountered in divide\n" + ] + }, + { + "name": "stdout", + "output_type": "stream", + "text": [ + "N_contact_pairs = 215661\n", + "N_noncontact_cell_pairs = 215661\n" + ] + }, + { + "name": "stderr", + "output_type": "stream", + "text": [ + ":89: RuntimeWarning: divide by zero encountered in divide\n", + ":89: RuntimeWarning: invalid value encountered in divide\n" + ] + }, + { + "name": "stdout", + "output_type": "stream", + "text": [ + "ABC NN ABC NN\n", + "N_contact_pairs = 114\n", + "N_noncontact_cell_pairs = 114\n", + "Oligo NN STR-PAL Chst9 Gaba\n" + ] + }, + { + "name": "stderr", + "output_type": "stream", + "text": [ + ":89: RuntimeWarning: divide by zero encountered in divide\n", + ":89: RuntimeWarning: invalid value encountered in divide\n" + ] + }, + { + "name": "stdout", + "output_type": "stream", + "text": [ + "N_contact_pairs = 8316\n", + "N_noncontact_cell_pairs = 8316\n" + ] + }, + { + "name": "stderr", + "output_type": "stream", + "text": [ + ":89: RuntimeWarning: divide by zero encountered in divide\n", + ":89: RuntimeWarning: invalid value encountered in divide\n" + ] + }, + { + "name": "stdout", + "output_type": "stream", + "text": [ + "N_contact_pairs = 8316\n", + "N_noncontact_cell_pairs = 8316\n" + ] + }, + { + "name": "stderr", + "output_type": "stream", + "text": [ + ":89: RuntimeWarning: divide by zero encountered in divide\n", + ":89: RuntimeWarning: invalid value encountered in divide\n" + ] + }, + { + "name": "stdout", + "output_type": "stream", + "text": [ + "Astro-TE NN Oligo NN\n", + "N_contact_pairs = 27513\n", + "N_noncontact_cell_pairs = 27513\n" + ] + }, + { + "name": "stderr", + "output_type": "stream", + "text": [ + ":89: RuntimeWarning: divide by zero encountered in divide\n", + ":89: RuntimeWarning: invalid value encountered in divide\n" + ] + }, + { + "name": "stdout", + "output_type": "stream", + "text": [ + "N_contact_pairs = 27513\n", + "N_noncontact_cell_pairs = 27513\n" + ] + }, + { + "name": "stderr", + "output_type": "stream", + "text": [ + ":89: RuntimeWarning: divide by zero encountered in divide\n", + ":89: RuntimeWarning: invalid value encountered in divide\n" + ] + }, + { + "name": "stdout", + "output_type": "stream", + "text": [ + "ABC NN VLMC NN\n", + "N_contact_pairs = 336\n", + "N_noncontact_cell_pairs = 336\n", + "N_contact_pairs = 336\n", + "N_noncontact_cell_pairs = 336\n", + "STR D1 Sema5a Gaba STR-PAL Chst9 Gaba\n" + ] + }, + { + "name": "stderr", + "output_type": "stream", + "text": [ + ":89: RuntimeWarning: divide by zero encountered in divide\n", + ":89: RuntimeWarning: invalid value encountered in divide\n", + ":89: RuntimeWarning: divide by zero encountered in divide\n", + ":89: RuntimeWarning: invalid value encountered in divide\n" + ] + }, + { + "name": "stdout", + "output_type": "stream", + "text": [ + "N_contact_pairs = 3672\n", + "N_noncontact_cell_pairs = 3672\n" + ] + }, + { + "name": "stderr", + "output_type": "stream", + "text": [ + ":89: RuntimeWarning: divide by zero encountered in divide\n", + ":89: RuntimeWarning: invalid value encountered in divide\n" + ] + }, + { + "name": "stdout", + "output_type": "stream", + "text": [ + "N_contact_pairs = 3672\n", + "N_noncontact_cell_pairs = 3672\n", + "Microglia NN Oligo NN\n" + ] + }, + { + "name": "stderr", + "output_type": "stream", + "text": [ + ":89: RuntimeWarning: divide by zero encountered in divide\n", + ":89: RuntimeWarning: invalid value encountered in divide\n" + ] + }, + { + "name": "stdout", + "output_type": "stream", + "text": [ + "N_contact_pairs = 12775\n", + "N_noncontact_cell_pairs = 12775\n" + ] + }, + { + "name": "stderr", + "output_type": "stream", + "text": [ + ":89: RuntimeWarning: divide by zero encountered in divide\n", + ":89: RuntimeWarning: invalid value encountered in divide\n" + ] + }, + { + "name": "stdout", + "output_type": "stream", + "text": [ + "N_contact_pairs = 12775\n", + "N_noncontact_cell_pairs = 12775\n" + ] + }, + { + "name": "stderr", + "output_type": "stream", + "text": [ + ":89: RuntimeWarning: divide by zero encountered in divide\n", + ":89: RuntimeWarning: invalid value encountered in divide\n", + ":89: RuntimeWarning: divide by zero encountered in divide\n", + ":89: RuntimeWarning: invalid value encountered in divide\n" + ] + }, + { + "name": "stdout", + "output_type": "stream", + "text": [ + "BAM NN CHOR NN\n", + "N_contact_pairs = 416\n", + "N_noncontact_cell_pairs = 416\n", + "N_contact_pairs = 416\n", + "N_noncontact_cell_pairs = 416\n", + "BAM NN BAM NN\n", + "N_contact_pairs = 123\n", + "N_noncontact_cell_pairs = 123\n", + "CHOR NN Ependymal NN\n", + "N_contact_pairs = 2219\n", + "N_noncontact_cell_pairs = 2219\n" + ] + }, + { + "name": "stderr", + "output_type": "stream", + "text": [ + ":89: RuntimeWarning: divide by zero encountered in divide\n", + ":89: RuntimeWarning: invalid value encountered in divide\n", + ":89: RuntimeWarning: divide by zero encountered in divide\n", + ":89: RuntimeWarning: invalid value encountered in divide\n", + ":89: RuntimeWarning: divide by zero encountered in divide\n", + ":89: RuntimeWarning: invalid value encountered in divide\n" + ] + }, + { + "name": "stdout", + "output_type": "stream", + "text": [ + "N_contact_pairs = 2219\n", + "N_noncontact_cell_pairs = 2219\n", + "Sst Chodl Gaba Sst Chodl Gaba\n", + "N_contact_pairs = 177\n", + "N_noncontact_cell_pairs = 177\n", + "Astro-TE NN Endo NN\n" + ] + }, + { + "name": "stderr", + "output_type": "stream", + "text": [ + ":89: RuntimeWarning: divide by zero encountered in divide\n", + ":89: RuntimeWarning: invalid value encountered in divide\n", + ":89: RuntimeWarning: divide by zero encountered in divide\n", + ":89: RuntimeWarning: invalid value encountered in divide\n" + ] + }, + { + "name": "stdout", + "output_type": "stream", + "text": [ + "N_contact_pairs = 21101\n", + "N_noncontact_cell_pairs = 21101\n" + ] + }, + { + "name": "stderr", + "output_type": "stream", + "text": [ + ":89: RuntimeWarning: divide by zero encountered in divide\n", + ":89: RuntimeWarning: invalid value encountered in divide\n" + ] + }, + { + "name": "stdout", + "output_type": "stream", + "text": [ + "N_contact_pairs = 21101\n", + "N_noncontact_cell_pairs = 21101\n" + ] + }, + { + "name": "stderr", + "output_type": "stream", + "text": [ + ":89: RuntimeWarning: divide by zero encountered in divide\n", + ":89: RuntimeWarning: invalid value encountered in divide\n" + ] + }, + { + "name": "stdout", + "output_type": "stream", + "text": [ + "PAL-STR Gaba-Chol PAL-STR Gaba-Chol\n", + "N_contact_pairs = 146\n", + "N_noncontact_cell_pairs = 146\n", + "OPC NN OPC NN\n", + "N_contact_pairs = 1247\n", + "N_noncontact_cell_pairs = 1247\n" + ] + }, + { + "name": "stderr", + "output_type": "stream", + "text": [ + ":89: RuntimeWarning: divide by zero encountered in divide\n", + ":89: RuntimeWarning: invalid value encountered in divide\n", + ":89: RuntimeWarning: divide by zero encountered in divide\n", + ":89: RuntimeWarning: invalid value encountered in divide\n" + ] + }, + { + "name": "stdout", + "output_type": "stream", + "text": [ + "Peri NN VLMC NN\n", + "N_contact_pairs = 366\n", + "N_noncontact_cell_pairs = 366\n", + "N_contact_pairs = 366\n", + "N_noncontact_cell_pairs = 366\n" + ] + }, + { + "name": "stderr", + "output_type": "stream", + "text": [ + ":89: RuntimeWarning: divide by zero encountered in divide\n", + ":89: RuntimeWarning: invalid value encountered in divide\n", + ":89: RuntimeWarning: divide by zero encountered in divide\n", + ":89: RuntimeWarning: invalid value encountered in divide\n" + ] + }, + { + "name": "stdout", + "output_type": "stream", + "text": [ + "CHOR NN Endo NN\n", + "N_contact_pairs = 755\n", + "N_noncontact_cell_pairs = 755\n" + ] + }, + { + "name": "stderr", + "output_type": "stream", + "text": [ + ":89: RuntimeWarning: divide by zero encountered in divide\n", + ":89: RuntimeWarning: invalid value encountered in divide\n" + ] + }, + { + "name": "stdout", + "output_type": "stream", + "text": [ + "N_contact_pairs = 755\n", + "N_noncontact_cell_pairs = 755\n", + "OPC NN Oligo NN\n" + ] + }, + { + "name": "stderr", + "output_type": "stream", + "text": [ + ":89: RuntimeWarning: divide by zero encountered in divide\n", + ":89: RuntimeWarning: invalid value encountered in divide\n" + ] + }, + { + "name": "stdout", + "output_type": "stream", + "text": [ + "N_contact_pairs = 7557\n", + "N_noncontact_cell_pairs = 7557\n" + ] + }, + { + "name": "stderr", + "output_type": "stream", + "text": [ + ":89: RuntimeWarning: divide by zero encountered in divide\n", + ":89: RuntimeWarning: invalid value encountered in divide\n" + ] + }, + { + "name": "stdout", + "output_type": "stream", + "text": [ + "N_contact_pairs = 7557\n", + "N_noncontact_cell_pairs = 7557\n" + ] + }, + { + "name": "stderr", + "output_type": "stream", + "text": [ + ":89: RuntimeWarning: divide by zero encountered in divide\n", + ":89: RuntimeWarning: invalid value encountered in divide\n" + ] + }, + { + "name": "stdout", + "output_type": "stream", + "text": [ + "Endo NN Microglia NN\n", + "N_contact_pairs = 10067\n", + "N_noncontact_cell_pairs = 10067\n" + ] + }, + { + "name": "stderr", + "output_type": "stream", + "text": [ + ":89: RuntimeWarning: divide by zero encountered in divide\n", + ":89: RuntimeWarning: invalid value encountered in divide\n" + ] + }, + { + "name": "stdout", + "output_type": "stream", + "text": [ + "N_contact_pairs = 10067\n", + "N_noncontact_cell_pairs = 10067\n" + ] + }, + { + "name": "stderr", + "output_type": "stream", + "text": [ + ":89: RuntimeWarning: divide by zero encountered in divide\n", + ":89: RuntimeWarning: invalid value encountered in divide\n", + ":89: RuntimeWarning: divide by zero encountered in divide\n", + ":89: RuntimeWarning: invalid value encountered in divide\n" + ] + }, + { + "name": "stdout", + "output_type": "stream", + "text": [ + "LSX Prdm12 Zeb2 Gaba LSX Prdm12 Zeb2 Gaba\n", + "N_contact_pairs = 3049\n", + "N_noncontact_cell_pairs = 3049\n", + "CEA-BST Six3 Cyp26b1 Gaba CEA-BST Six3 Cyp26b1 Gaba\n", + "N_contact_pairs = 2130\n", + "N_noncontact_cell_pairs = 2130\n" + ] + }, + { + "name": "stderr", + "output_type": "stream", + "text": [ + ":89: RuntimeWarning: divide by zero encountered in divide\n", + ":89: RuntimeWarning: invalid value encountered in divide\n", + ":89: RuntimeWarning: divide by zero encountered in divide\n", + ":89: RuntimeWarning: invalid value encountered in divide\n", + ":89: RuntimeWarning: divide by zero encountered in divide\n", + ":89: RuntimeWarning: invalid value encountered in divide\n" + ] + }, + { + "name": "stdout", + "output_type": "stream", + "text": [ + "CHOR NN Peri NN\n", + "N_contact_pairs = 239\n", + "N_noncontact_cell_pairs = 239\n", + "N_contact_pairs = 239\n", + "N_noncontact_cell_pairs = 239\n", + "CHOR NN SMC NN\n", + "N_contact_pairs = 94\n", + "N_noncontact_cell_pairs = 94\n" + ] + }, + { + "name": "stderr", + "output_type": "stream", + "text": [ + ":89: RuntimeWarning: divide by zero encountered in divide\n", + ":89: RuntimeWarning: invalid value encountered in divide\n", + ":89: RuntimeWarning: divide by zero encountered in divide\n", + ":89: RuntimeWarning: invalid value encountered in divide\n" + ] + }, + { + "name": "stdout", + "output_type": "stream", + "text": [ + "N_contact_pairs = 94\n", + "N_noncontact_cell_pairs = 94\n", + "Astro-TE NN Peri NN\n", + "N_contact_pairs = 3188\n", + "N_noncontact_cell_pairs = 3188\n" + ] + }, + { + "name": "stderr", + "output_type": "stream", + "text": [ + ":89: RuntimeWarning: divide by zero encountered in divide\n", + ":89: RuntimeWarning: invalid value encountered in divide\n" + ] + }, + { + "name": "stdout", + "output_type": "stream", + "text": [ + "N_contact_pairs = 3188\n", + "N_noncontact_cell_pairs = 3188\n" + ] + }, + { + "name": "stderr", + "output_type": "stream", + "text": [ + ":89: RuntimeWarning: divide by zero encountered in divide\n", + ":89: RuntimeWarning: invalid value encountered in divide\n", + ":89: RuntimeWarning: divide by zero encountered in divide\n", + ":89: RuntimeWarning: invalid value encountered in divide\n" + ] + }, + { + "name": "stdout", + "output_type": "stream", + "text": [ + "MEA-BST Lhx6 Nfib Gaba MEA-BST Lhx6 Nfib Gaba\n", + "N_contact_pairs = 1002\n", + "N_noncontact_cell_pairs = 1002\n", + "Astro-TE NN SMC NN\n", + "N_contact_pairs = 1282\n", + "N_noncontact_cell_pairs = 1282\n" + ] + }, + { + "name": "stderr", + "output_type": "stream", + "text": [ + ":89: RuntimeWarning: divide by zero encountered in divide\n", + ":89: RuntimeWarning: invalid value encountered in divide\n" + ] + }, + { + "name": "stdout", + "output_type": "stream", + "text": [ + "N_contact_pairs = 1282\n", + "N_noncontact_cell_pairs = 1282\n", + "Ependymal NN MEA-BST Sox6 Gaba\n", + "N_contact_pairs = 72\n", + "N_noncontact_cell_pairs = 72\n" + ] + }, + { + "name": "stderr", + "output_type": "stream", + "text": [ + ":89: RuntimeWarning: divide by zero encountered in divide\n", + ":89: RuntimeWarning: invalid value encountered in divide\n", + ":89: RuntimeWarning: divide by zero encountered in divide\n", + ":89: RuntimeWarning: invalid value encountered in divide\n", + ":89: RuntimeWarning: divide by zero encountered in divide\n", + ":89: RuntimeWarning: invalid value encountered in divide\n", + ":89: RuntimeWarning: divide by zero encountered in divide\n", + ":89: RuntimeWarning: invalid value encountered in divide\n" + ] + }, + { + "name": "stdout", + "output_type": "stream", + "text": [ + "N_contact_pairs = 72\n", + "N_noncontact_cell_pairs = 72\n", + "BAM NN Peri NN\n", + "N_contact_pairs = 123\n", + "N_noncontact_cell_pairs = 123\n", + "N_contact_pairs = 123\n", + "N_noncontact_cell_pairs = 123\n", + "LSX Otx2 Gaba LSX Otx2 Gaba\n", + "N_contact_pairs = 1426\n", + "N_noncontact_cell_pairs = 1426\n" + ] + }, + { + "name": "stderr", + "output_type": "stream", + "text": [ + ":89: RuntimeWarning: divide by zero encountered in divide\n", + ":89: RuntimeWarning: invalid value encountered in divide\n", + ":89: RuntimeWarning: divide by zero encountered in divide\n", + ":89: RuntimeWarning: invalid value encountered in divide\n", + ":89: RuntimeWarning: divide by zero encountered in divide\n", + ":89: RuntimeWarning: invalid value encountered in divide\n", + ":89: RuntimeWarning: divide by zero encountered in divide\n", + ":89: RuntimeWarning: invalid value encountered in divide\n", + ":89: RuntimeWarning: divide by zero encountered in divide\n", + ":89: RuntimeWarning: invalid value encountered in divide\n" + ] + }, + { + "name": "stdout", + "output_type": "stream", + "text": [ + "Lymphoid NN VLMC NN\n", + "N_contact_pairs = 73\n", + "N_noncontact_cell_pairs = 73\n", + "N_contact_pairs = 73\n", + "N_noncontact_cell_pairs = 73\n", + "NLOT Rho Glut NLOT Rho Glut\n", + "N_contact_pairs = 518\n", + "N_noncontact_cell_pairs = 518\n", + "Astro-TE NN VLMC NN\n", + "N_contact_pairs = 1294\n", + "N_noncontact_cell_pairs = 1294\n" + ] + }, + { + "name": "stderr", + "output_type": "stream", + "text": [ + ":89: RuntimeWarning: divide by zero encountered in divide\n", + ":89: RuntimeWarning: invalid value encountered in divide\n" + ] + }, + { + "name": "stdout", + "output_type": "stream", + "text": [ + "N_contact_pairs = 1294\n", + "N_noncontact_cell_pairs = 1294\n", + "Peri NN Peri NN\n" + ] + }, + { + "name": "stderr", + "output_type": "stream", + "text": [ + ":89: RuntimeWarning: divide by zero encountered in divide\n", + ":89: RuntimeWarning: invalid value encountered in divide\n", + ":89: RuntimeWarning: divide by zero encountered in divide\n", + ":89: RuntimeWarning: invalid value encountered in divide\n", + ":89: RuntimeWarning: divide by zero encountered in divide\n", + ":89: RuntimeWarning: invalid value encountered in divide\n" + ] + }, + { + "name": "stdout", + "output_type": "stream", + "text": [ + "N_contact_pairs = 327\n", + "N_noncontact_cell_pairs = 327\n", + "STR Lhx8 Gaba STR Lhx8 Gaba\n", + "N_contact_pairs = 96\n", + "N_noncontact_cell_pairs = 96\n", + "MEA Slc17a7 Glut MEA Slc17a7 Glut\n", + "N_contact_pairs = 3236\n", + "N_noncontact_cell_pairs = 3236\n", + "LSX Nkx2-1 Gaba LSX Nkx2-1 Gaba\n" + ] + }, + { + "name": "stderr", + "output_type": "stream", + "text": [ + ":89: RuntimeWarning: divide by zero encountered in divide\n", + ":89: RuntimeWarning: invalid value encountered in divide\n", + ":89: RuntimeWarning: divide by zero encountered in divide\n", + ":89: RuntimeWarning: invalid value encountered in divide\n" + ] + }, + { + "name": "stdout", + "output_type": "stream", + "text": [ + "N_contact_pairs = 1576\n", + "N_noncontact_cell_pairs = 1576\n", + "Microglia NN Peri NN\n", + "N_contact_pairs = 1500\n", + "N_noncontact_cell_pairs = 1500\n" + ] + }, + { + "name": "stderr", + "output_type": "stream", + "text": [ + ":89: RuntimeWarning: divide by zero encountered in divide\n", + ":89: RuntimeWarning: invalid value encountered in divide\n" + ] + }, + { + "name": "stdout", + "output_type": "stream", + "text": [ + "N_contact_pairs = 1500\n", + "N_noncontact_cell_pairs = 1500\n", + "MEA-COA-BMA Ccdc42 Glut MEA-COA-BMA Ccdc42 Glut\n", + "N_contact_pairs = 4031\n", + "N_noncontact_cell_pairs = 4031\n" + ] + }, + { + "name": "stderr", + "output_type": "stream", + "text": [ + ":89: RuntimeWarning: divide by zero encountered in divide\n", + ":89: RuntimeWarning: invalid value encountered in divide\n", + ":89: RuntimeWarning: divide by zero encountered in divide\n", + ":89: RuntimeWarning: invalid value encountered in divide\n" + ] + }, + { + "name": "stdout", + "output_type": "stream", + "text": [ + "LSX Prdm12 Slit2 Gaba LSX Prdm12 Slit2 Gaba\n", + "N_contact_pairs = 3174\n", + "N_noncontact_cell_pairs = 3174\n", + "CEA-BST Ebf1 Pdyn Gaba CEA-BST Ebf1 Pdyn Gaba\n", + "N_contact_pairs = 1790\n", + "N_noncontact_cell_pairs = 1790\n", + "MEA Otp Foxp2 Glut MEA Otp Foxp2 Glut\n", + "N_contact_pairs = 361\n", + "N_noncontact_cell_pairs = 361\n" + ] + }, + { + "name": "stderr", + "output_type": "stream", + "text": [ + ":89: RuntimeWarning: divide by zero encountered in divide\n", + ":89: RuntimeWarning: invalid value encountered in divide\n", + ":89: RuntimeWarning: divide by zero encountered in divide\n", + ":89: RuntimeWarning: invalid value encountered in divide\n", + ":89: RuntimeWarning: divide by zero encountered in divide\n", + ":89: RuntimeWarning: invalid value encountered in divide\n", + ":89: RuntimeWarning: divide by zero encountered in divide\n", + ":89: RuntimeWarning: invalid value encountered in divide\n", + ":89: RuntimeWarning: divide by zero encountered in divide\n", + ":89: RuntimeWarning: invalid value encountered in divide\n" + ] + }, + { + "name": "stdout", + "output_type": "stream", + "text": [ + "MEA-BST Sox6 Gaba MEA-BST Sox6 Gaba\n", + "N_contact_pairs = 512\n", + "N_noncontact_cell_pairs = 512\n", + "ACB-BST-FS D1 Gaba ACB-BST-FS D1 Gaba\n", + "N_contact_pairs = 222\n", + "N_noncontact_cell_pairs = 222\n", + "Endo NN Lymphoid NN\n", + "N_contact_pairs = 168\n", + "N_noncontact_cell_pairs = 168\n" + ] + }, + { + "name": "stderr", + "output_type": "stream", + "text": [ + ":89: RuntimeWarning: divide by zero encountered in divide\n", + ":89: RuntimeWarning: invalid value encountered in divide\n" + ] + }, + { + "name": "stdout", + "output_type": "stream", + "text": [ + "N_contact_pairs = 168\n", + "N_noncontact_cell_pairs = 168\n", + "MEA-BST Lhx6 Sp9 Gaba MEA-BST Lhx6 Sp9 Gaba\n", + "N_contact_pairs = 362\n", + "N_noncontact_cell_pairs = 362\n", + "Astro-TE NN STR D1 Sema5a Gaba\n" + ] + }, + { + "name": "stderr", + "output_type": "stream", + "text": [ + ":89: RuntimeWarning: divide by zero encountered in divide\n", + ":89: RuntimeWarning: invalid value encountered in divide\n", + ":89: RuntimeWarning: divide by zero encountered in divide\n", + ":89: RuntimeWarning: invalid value encountered in divide\n" + ] + }, + { + "name": "stdout", + "output_type": "stream", + "text": [ + "N_contact_pairs = 5724\n", + "N_noncontact_cell_pairs = 5724\n" + ] + }, + { + "name": "stderr", + "output_type": "stream", + "text": [ + ":89: RuntimeWarning: divide by zero encountered in divide\n", + ":89: RuntimeWarning: invalid value encountered in divide\n" + ] + }, + { + "name": "stdout", + "output_type": "stream", + "text": [ + "N_contact_pairs = 5724\n", + "N_noncontact_cell_pairs = 5724\n" + ] + }, + { + "name": "stderr", + "output_type": "stream", + "text": [ + ":89: RuntimeWarning: divide by zero encountered in divide\n", + ":89: RuntimeWarning: invalid value encountered in divide\n", + ":89: RuntimeWarning: divide by zero encountered in divide\n", + ":89: RuntimeWarning: invalid value encountered in divide\n", + ":89: RuntimeWarning: divide by zero encountered in divide\n", + ":89: RuntimeWarning: invalid value encountered in divide\n", + ":89: RuntimeWarning: divide by zero encountered in divide\n", + ":89: RuntimeWarning: invalid value encountered in divide\n", + ":89: RuntimeWarning: divide by zero encountered in divide\n", + ":89: RuntimeWarning: invalid value encountered in divide\n" + ] + }, + { + "name": "stdout", + "output_type": "stream", + "text": [ + "MS-SF Bsx Glut MS-SF Bsx Glut\n", + "N_contact_pairs = 288\n", + "N_noncontact_cell_pairs = 288\n", + "CHOR NN Lymphoid NN\n", + "N_contact_pairs = 70\n", + "N_noncontact_cell_pairs = 70\n", + "N_contact_pairs = 70\n", + "N_noncontact_cell_pairs = 70\n", + "ABC NN SMC NN\n", + "N_contact_pairs = 55\n", + "N_noncontact_cell_pairs = 55\n", + "N_contact_pairs = 55\n", + "N_noncontact_cell_pairs = 55\n", + "STR D1 Gaba STR Prox1 Lhx6 Gaba\n" + ] + }, + { + "name": "stderr", + "output_type": "stream", + "text": [ + ":89: RuntimeWarning: divide by zero encountered in divide\n", + ":89: RuntimeWarning: invalid value encountered in divide\n" + ] + }, + { + "name": "stdout", + "output_type": "stream", + "text": [ + "N_contact_pairs = 5060\n", + "N_noncontact_cell_pairs = 5060\n" + ] + }, + { + "name": "stderr", + "output_type": "stream", + "text": [ + ":89: RuntimeWarning: divide by zero encountered in divide\n", + ":89: RuntimeWarning: invalid value encountered in divide\n" + ] + }, + { + "name": "stdout", + "output_type": "stream", + "text": [ + "N_contact_pairs = 5060\n", + "N_noncontact_cell_pairs = 5060\n" + ] + }, + { + "name": "stderr", + "output_type": "stream", + "text": [ + ":89: RuntimeWarning: divide by zero encountered in divide\n", + ":89: RuntimeWarning: invalid value encountered in divide\n" + ] + }, + { + "name": "stdout", + "output_type": "stream", + "text": [ + "STR D2 Gaba STR Prox1 Lhx6 Gaba\n", + "N_contact_pairs = 4554\n", + "N_noncontact_cell_pairs = 4554\n" + ] + }, + { + "name": "stderr", + "output_type": "stream", + "text": [ + ":89: RuntimeWarning: divide by zero encountered in divide\n", + ":89: RuntimeWarning: invalid value encountered in divide\n" + ] + }, + { + "name": "stdout", + "output_type": "stream", + "text": [ + "N_contact_pairs = 4554\n", + "N_noncontact_cell_pairs = 4554\n" + ] + }, + { + "name": "stderr", + "output_type": "stream", + "text": [ + ":89: RuntimeWarning: divide by zero encountered in divide\n", + ":89: RuntimeWarning: invalid value encountered in divide\n" + ] + }, + { + "name": "stdout", + "output_type": "stream", + "text": [ + "Endo NN TRS-BAC Sln Glut\n", + "N_contact_pairs = 412\n", + "N_noncontact_cell_pairs = 412\n" + ] + }, + { + "name": "stderr", + "output_type": "stream", + "text": [ + ":89: RuntimeWarning: divide by zero encountered in divide\n", + ":89: RuntimeWarning: invalid value encountered in divide\n" + ] + }, + { + "name": "stdout", + "output_type": "stream", + "text": [ + "N_contact_pairs = 412\n", + "N_noncontact_cell_pairs = 412\n", + "Ependymal NN Microglia NN\n" + ] + }, + { + "name": "stderr", + "output_type": "stream", + "text": [ + ":89: RuntimeWarning: divide by zero encountered in divide\n", + ":89: RuntimeWarning: invalid value encountered in divide\n", + ":89: RuntimeWarning: divide by zero encountered in divide\n", + ":89: RuntimeWarning: invalid value encountered in divide\n" + ] + }, + { + "name": "stdout", + "output_type": "stream", + "text": [ + "N_contact_pairs = 399\n", + "N_noncontact_cell_pairs = 399\n", + "N_contact_pairs = 399\n", + "N_noncontact_cell_pairs = 399\n", + "Astro-TE NN TRS-BAC Sln Glut\n" + ] + }, + { + "name": "stderr", + "output_type": "stream", + "text": [ + ":89: RuntimeWarning: divide by zero encountered in divide\n", + ":89: RuntimeWarning: invalid value encountered in divide\n" + ] + }, + { + "name": "stdout", + "output_type": "stream", + "text": [ + "N_contact_pairs = 451\n", + "N_noncontact_cell_pairs = 451\n" + ] + }, + { + "name": "stderr", + "output_type": "stream", + "text": [ + ":89: RuntimeWarning: divide by zero encountered in divide\n", + ":89: RuntimeWarning: invalid value encountered in divide\n" + ] + }, + { + "name": "stdout", + "output_type": "stream", + "text": [ + "N_contact_pairs = 451\n", + "N_noncontact_cell_pairs = 451\n", + "NDB-SI-ant Prdm12 Gaba NDB-SI-ant Prdm12 Gaba\n", + "N_contact_pairs = 157\n", + "N_noncontact_cell_pairs = 157\n", + "Astro-TE NN OPC NN\n" + ] + }, + { + "name": "stderr", + "output_type": "stream", + "text": [ + ":89: RuntimeWarning: divide by zero encountered in divide\n", + ":89: RuntimeWarning: invalid value encountered in divide\n", + ":89: RuntimeWarning: divide by zero encountered in divide\n", + ":89: RuntimeWarning: invalid value encountered in divide\n" + ] + }, + { + "name": "stdout", + "output_type": "stream", + "text": [ + "N_contact_pairs = 5644\n", + "N_noncontact_cell_pairs = 5644\n" + ] + }, + { + "name": "stderr", + "output_type": "stream", + "text": [ + ":89: RuntimeWarning: divide by zero encountered in divide\n", + ":89: RuntimeWarning: invalid value encountered in divide\n" + ] + }, + { + "name": "stdout", + "output_type": "stream", + "text": [ + "N_contact_pairs = 5644\n", + "N_noncontact_cell_pairs = 5644\n" + ] + }, + { + "name": "stderr", + "output_type": "stream", + "text": [ + ":89: RuntimeWarning: divide by zero encountered in divide\n", + ":89: RuntimeWarning: invalid value encountered in divide\n", + ":89: RuntimeWarning: divide by zero encountered in divide\n", + ":89: RuntimeWarning: invalid value encountered in divide\n", + ":89: RuntimeWarning: divide by zero encountered in divide\n", + ":89: RuntimeWarning: invalid value encountered in divide\n", + ":89: RuntimeWarning: divide by zero encountered in divide\n", + ":89: RuntimeWarning: invalid value encountered in divide\n" + ] + }, + { + "name": "stdout", + "output_type": "stream", + "text": [ + "LSX Prdm12 Slit2 Gaba TRS-BAC Sln Glut\n", + "N_contact_pairs = 213\n", + "N_noncontact_cell_pairs = 213\n", + "N_contact_pairs = 213\n", + "N_noncontact_cell_pairs = 213\n", + "CEA-AAA-BST Six3 Sp9 Gaba CEA-AAA-BST Six3 Sp9 Gaba\n", + "N_contact_pairs = 241\n", + "N_noncontact_cell_pairs = 241\n", + "Astro-TE NN Microglia NN\n", + "N_contact_pairs = 8854\n", + "N_noncontact_cell_pairs = 8854\n" + ] + }, + { + "name": "stderr", + "output_type": "stream", + "text": [ + ":89: RuntimeWarning: divide by zero encountered in divide\n", + ":89: RuntimeWarning: invalid value encountered in divide\n" + ] + }, + { + "name": "stdout", + "output_type": "stream", + "text": [ + "N_contact_pairs = 8854\n", + "N_noncontact_cell_pairs = 8854\n" + ] + }, + { + "name": "stderr", + "output_type": "stream", + "text": [ + ":89: RuntimeWarning: divide by zero encountered in divide\n", + ":89: RuntimeWarning: invalid value encountered in divide\n" + ] + }, + { + "name": "stdout", + "output_type": "stream", + "text": [ + "OPC NN TRS-BAC Sln Glut\n", + "N_contact_pairs = 242\n", + "N_noncontact_cell_pairs = 242\n", + "N_contact_pairs = 242\n", + "N_noncontact_cell_pairs = 242\n" + ] + }, + { + "name": "stderr", + "output_type": "stream", + "text": [ + ":89: RuntimeWarning: divide by zero encountered in divide\n", + ":89: RuntimeWarning: invalid value encountered in divide\n", + ":89: RuntimeWarning: divide by zero encountered in divide\n", + ":89: RuntimeWarning: invalid value encountered in divide\n" + ] + }, + { + "name": "stdout", + "output_type": "stream", + "text": [ + "Microglia NN VLMC NN\n", + "N_contact_pairs = 508\n", + "N_noncontact_cell_pairs = 508\n" + ] + }, + { + "name": "stderr", + "output_type": "stream", + "text": [ + ":89: RuntimeWarning: divide by zero encountered in divide\n", + ":89: RuntimeWarning: invalid value encountered in divide\n" + ] + }, + { + "name": "stdout", + "output_type": "stream", + "text": [ + "N_contact_pairs = 508\n", + "N_noncontact_cell_pairs = 508\n", + "BST-MPN Six3 Nrgn Gaba BST-MPN Six3 Nrgn Gaba\n", + "N_contact_pairs = 35\n", + "N_noncontact_cell_pairs = 35\n", + "Astro-TE NN BAM NN\n" + ] + }, + { + "name": "stderr", + "output_type": "stream", + "text": [ + ":89: RuntimeWarning: divide by zero encountered in divide\n", + ":89: RuntimeWarning: invalid value encountered in divide\n", + ":89: RuntimeWarning: divide by zero encountered in divide\n", + ":89: RuntimeWarning: invalid value encountered in divide\n" + ] + }, + { + "name": "stdout", + "output_type": "stream", + "text": [ + "N_contact_pairs = 427\n", + "N_noncontact_cell_pairs = 427\n" + ] + }, + { + "name": "stderr", + "output_type": "stream", + "text": [ + ":89: RuntimeWarning: divide by zero encountered in divide\n", + ":89: RuntimeWarning: invalid value encountered in divide\n" + ] + }, + { + "name": "stdout", + "output_type": "stream", + "text": [ + "N_contact_pairs = 427\n", + "N_noncontact_cell_pairs = 427\n", + "STR D1 Sema5a Gaba Sst Chodl Gaba\n" + ] + }, + { + "name": "stderr", + "output_type": "stream", + "text": [ + ":89: RuntimeWarning: divide by zero encountered in divide\n", + ":89: RuntimeWarning: invalid value encountered in divide\n", + ":89: RuntimeWarning: divide by zero encountered in divide\n", + ":89: RuntimeWarning: invalid value encountered in divide\n" + ] + }, + { + "name": "stdout", + "output_type": "stream", + "text": [ + "N_contact_pairs = 511\n", + "N_noncontact_cell_pairs = 511\n", + "N_contact_pairs = 511\n", + "N_noncontact_cell_pairs = 511\n", + "OT D3 Folh1 Gaba PAL-STR Gaba-Chol\n" + ] + }, + { + "name": "stderr", + "output_type": "stream", + "text": [ + ":89: RuntimeWarning: divide by zero encountered in divide\n", + ":89: RuntimeWarning: invalid value encountered in divide\n", + ":89: RuntimeWarning: divide by zero encountered in divide\n", + ":89: RuntimeWarning: invalid value encountered in divide\n" + ] + }, + { + "name": "stdout", + "output_type": "stream", + "text": [ + "N_contact_pairs = 602\n", + "N_noncontact_cell_pairs = 602\n", + "N_contact_pairs = 602\n", + "N_noncontact_cell_pairs = 602\n", + "ACB-BST-FS D1 Gaba CEA-AAA-BST Six3 Sp9 Gaba\n" + ] + }, + { + "name": "stderr", + "output_type": "stream", + "text": [ + ":89: RuntimeWarning: divide by zero encountered in divide\n", + ":89: RuntimeWarning: invalid value encountered in divide\n", + ":89: RuntimeWarning: divide by zero encountered in divide\n", + ":89: RuntimeWarning: invalid value encountered in divide\n", + ":89: RuntimeWarning: divide by zero encountered in divide\n", + ":89: RuntimeWarning: invalid value encountered in divide\n" + ] + }, + { + "name": "stdout", + "output_type": "stream", + "text": [ + "N_contact_pairs = 97\n", + "N_noncontact_cell_pairs = 97\n", + "N_contact_pairs = 97\n", + "N_noncontact_cell_pairs = 97\n", + "Microglia NN OPC NN\n", + "N_contact_pairs = 2488\n", + "N_noncontact_cell_pairs = 2488\n" + ] + }, + { + "name": "stderr", + "output_type": "stream", + "text": [ + ":89: RuntimeWarning: divide by zero encountered in divide\n", + ":89: RuntimeWarning: invalid value encountered in divide\n" + ] + }, + { + "name": "stdout", + "output_type": "stream", + "text": [ + "N_contact_pairs = 2488\n", + "N_noncontact_cell_pairs = 2488\n", + "Microglia NN TRS-BAC Sln Glut\n" + ] + }, + { + "name": "stderr", + "output_type": "stream", + "text": [ + ":89: RuntimeWarning: divide by zero encountered in divide\n", + ":89: RuntimeWarning: invalid value encountered in divide\n" + ] + }, + { + "name": "stdout", + "output_type": "stream", + "text": [ + "N_contact_pairs = 211\n", + "N_noncontact_cell_pairs = 211\n", + "N_contact_pairs = 211\n", + "N_noncontact_cell_pairs = 211\n", + "Ependymal NN VLMC NN\n" + ] + }, + { + "name": "stderr", + "output_type": "stream", + "text": [ + ":89: RuntimeWarning: divide by zero encountered in divide\n", + ":89: RuntimeWarning: invalid value encountered in divide\n", + ":89: RuntimeWarning: divide by zero encountered in divide\n", + ":89: RuntimeWarning: invalid value encountered in divide\n", + ":89: RuntimeWarning: divide by zero encountered in divide\n", + ":89: RuntimeWarning: invalid value encountered in divide\n" + ] + }, + { + "name": "stdout", + "output_type": "stream", + "text": [ + "N_contact_pairs = 263\n", + "N_noncontact_cell_pairs = 263\n", + "N_contact_pairs = 263\n", + "N_noncontact_cell_pairs = 263\n", + "SI-MA-ACB Ebf1 Bnc2 Gaba STR-PAL Chst9 Gaba\n", + "N_contact_pairs = 241\n", + "N_noncontact_cell_pairs = 241\n" + ] + }, + { + "name": "stderr", + "output_type": "stream", + "text": [ + ":89: RuntimeWarning: divide by zero encountered in divide\n", + ":89: RuntimeWarning: invalid value encountered in divide\n", + ":89: RuntimeWarning: divide by zero encountered in divide\n", + ":89: RuntimeWarning: invalid value encountered in divide\n" + ] + }, + { + "name": "stdout", + "output_type": "stream", + "text": [ + "N_contact_pairs = 241\n", + "N_noncontact_cell_pairs = 241\n", + "Microglia NN STR-PAL Chst9 Gaba\n" + ] + }, + { + "name": "stderr", + "output_type": "stream", + "text": [ + ":89: RuntimeWarning: divide by zero encountered in divide\n", + ":89: RuntimeWarning: invalid value encountered in divide\n" + ] + }, + { + "name": "stdout", + "output_type": "stream", + "text": [ + "N_contact_pairs = 2375\n", + "N_noncontact_cell_pairs = 2375\n" + ] + }, + { + "name": "stderr", + "output_type": "stream", + "text": [ + ":89: RuntimeWarning: divide by zero encountered in divide\n", + ":89: RuntimeWarning: invalid value encountered in divide\n" + ] + }, + { + "name": "stdout", + "output_type": "stream", + "text": [ + "N_contact_pairs = 2375\n", + "N_noncontact_cell_pairs = 2375\n", + "MS-SF Bsx Glut NDB-SI-ant Prdm12 Gaba\n", + "N_contact_pairs = 70\n", + "N_noncontact_cell_pairs = 70\n", + "N_contact_pairs = 70\n", + "N_noncontact_cell_pairs = 70\n", + "Oligo NN TRS-BAC Sln Glut\n" + ] + }, + { + "name": "stderr", + "output_type": "stream", + "text": [ + ":89: RuntimeWarning: divide by zero encountered in divide\n", + ":89: RuntimeWarning: invalid value encountered in divide\n", + ":89: RuntimeWarning: divide by zero encountered in divide\n", + ":89: RuntimeWarning: invalid value encountered in divide\n", + ":89: RuntimeWarning: divide by zero encountered in divide\n", + ":89: RuntimeWarning: invalid value encountered in divide\n" + ] + }, + { + "name": "stdout", + "output_type": "stream", + "text": [ + "N_contact_pairs = 1019\n", + "N_noncontact_cell_pairs = 1019\n" + ] + }, + { + "name": "stderr", + "output_type": "stream", + "text": [ + ":89: RuntimeWarning: divide by zero encountered in divide\n", + ":89: RuntimeWarning: invalid value encountered in divide\n" + ] + }, + { + "name": "stdout", + "output_type": "stream", + "text": [ + "N_contact_pairs = 1019\n", + "N_noncontact_cell_pairs = 1019\n", + "LSX Sall3 Pax6 Gaba LSX Sall3 Pax6 Gaba\n", + "N_contact_pairs = 99\n", + "N_noncontact_cell_pairs = 99\n", + "LSX Sall3 Lmo1 Gaba LSX Sall3 Lmo1 Gaba\n" + ] + }, + { + "name": "stderr", + "output_type": "stream", + "text": [ + ":89: RuntimeWarning: divide by zero encountered in divide\n", + ":89: RuntimeWarning: invalid value encountered in divide\n", + ":89: RuntimeWarning: divide by zero encountered in divide\n", + ":89: RuntimeWarning: invalid value encountered in divide\n", + ":89: RuntimeWarning: divide by zero encountered in divide\n", + ":89: RuntimeWarning: invalid value encountered in divide\n", + ":89: RuntimeWarning: divide by zero encountered in divide\n", + ":89: RuntimeWarning: invalid value encountered in divide\n", + ":89: RuntimeWarning: divide by zero encountered in divide\n", + ":89: RuntimeWarning: invalid value encountered in divide\n" + ] + }, + { + "name": "stdout", + "output_type": "stream", + "text": [ + "N_contact_pairs = 274\n", + "N_noncontact_cell_pairs = 274\n", + "MEA-COA-BMA Ccdc42 Glut VLMC NN\n", + "N_contact_pairs = 105\n", + "N_noncontact_cell_pairs = 105\n", + "N_contact_pairs = 105\n", + "N_noncontact_cell_pairs = 105\n", + "STR Prox1 Lhx6 Gaba STR Prox1 Lhx6 Gaba\n", + "N_contact_pairs = 81\n", + "N_noncontact_cell_pairs = 81\n", + "MEA-BST Lhx6 Nr2e1 Gaba MEA-BST Lhx6 Nr2e1 Gaba\n", + "N_contact_pairs = 29\n", + "N_noncontact_cell_pairs = 29\n", + "Peri NN TRS-BAC Sln Glut\n" + ] + }, + { + "name": "stderr", + "output_type": "stream", + "text": [ + ":89: RuntimeWarning: divide by zero encountered in divide\n", + ":89: RuntimeWarning: invalid value encountered in divide\n", + ":89: RuntimeWarning: divide by zero encountered in divide\n", + ":89: RuntimeWarning: invalid value encountered in divide\n", + ":89: RuntimeWarning: divide by zero encountered in divide\n", + ":89: RuntimeWarning: invalid value encountered in divide\n", + ":89: RuntimeWarning: divide by zero encountered in divide\n", + ":89: RuntimeWarning: invalid value encountered in divide\n" + ] + }, + { + "name": "stdout", + "output_type": "stream", + "text": [ + "N_contact_pairs = 67\n", + "N_noncontact_cell_pairs = 67\n", + "N_contact_pairs = 67\n", + "N_noncontact_cell_pairs = 67\n", + "Endo NN LSX Otx2 Gaba\n", + "N_contact_pairs = 818\n", + "N_noncontact_cell_pairs = 818\n" + ] + }, + { + "name": "stderr", + "output_type": "stream", + "text": [ + ":89: RuntimeWarning: divide by zero encountered in divide\n", + ":89: RuntimeWarning: invalid value encountered in divide\n" + ] + }, + { + "name": "stdout", + "output_type": "stream", + "text": [ + "N_contact_pairs = 818\n", + "N_noncontact_cell_pairs = 818\n", + "PAL-STR Gaba-Chol STR D1 Sema5a Gaba\n" + ] + }, + { + "name": "stderr", + "output_type": "stream", + "text": [ + ":89: RuntimeWarning: divide by zero encountered in divide\n", + ":89: RuntimeWarning: invalid value encountered in divide\n", + ":89: RuntimeWarning: divide by zero encountered in divide\n", + ":89: RuntimeWarning: invalid value encountered in divide\n" + ] + }, + { + "name": "stdout", + "output_type": "stream", + "text": [ + "N_contact_pairs = 308\n", + "N_noncontact_cell_pairs = 308\n", + "N_contact_pairs = 308\n", + "N_noncontact_cell_pairs = 308\n", + "ACB-BST-FS D1 Gaba Microglia NN\n" + ] + }, + { + "name": "stderr", + "output_type": "stream", + "text": [ + ":89: RuntimeWarning: divide by zero encountered in divide\n", + ":89: RuntimeWarning: invalid value encountered in divide\n", + ":89: RuntimeWarning: divide by zero encountered in divide\n", + ":89: RuntimeWarning: invalid value encountered in divide\n" + ] + }, + { + "name": "stdout", + "output_type": "stream", + "text": [ + "N_contact_pairs = 107\n", + "N_noncontact_cell_pairs = 107\n", + "N_contact_pairs = 107\n", + "N_noncontact_cell_pairs = 107\n" + ] + }, + { + "name": "stderr", + "output_type": "stream", + "text": [ + ":89: RuntimeWarning: divide by zero encountered in divide\n", + ":89: RuntimeWarning: invalid value encountered in divide\n" + ] + }, + { + "name": "stdout", + "output_type": "stream", + "text": [ + "Astro-TE NN SI-MA-ACB Ebf1 Bnc2 Gaba\n", + "N_contact_pairs = 89\n", + "N_noncontact_cell_pairs = 89\n" + ] + }, + { + "name": "stderr", + "output_type": "stream", + "text": [ + ":89: RuntimeWarning: divide by zero encountered in divide\n", + ":89: RuntimeWarning: invalid value encountered in divide\n" + ] + }, + { + "name": "stdout", + "output_type": "stream", + "text": [ + "N_contact_pairs = 89\n", + "N_noncontact_cell_pairs = 89\n", + "ABC NN Astro-TE NN\n" + ] + }, + { + "name": "stderr", + "output_type": "stream", + "text": [ + ":89: RuntimeWarning: divide by zero encountered in divide\n", + ":89: RuntimeWarning: invalid value encountered in divide\n" + ] + }, + { + "name": "stdout", + "output_type": "stream", + "text": [ + "N_contact_pairs = 52\n", + "N_noncontact_cell_pairs = 52\n" + ] + }, + { + "name": "stderr", + "output_type": "stream", + "text": [ + ":89: RuntimeWarning: divide by zero encountered in divide\n", + ":89: RuntimeWarning: invalid value encountered in divide\n" + ] + }, + { + "name": "stdout", + "output_type": "stream", + "text": [ + "N_contact_pairs = 52\n", + "N_noncontact_cell_pairs = 52\n", + "Endo NN IA Mgp Gaba\n" + ] + }, + { + "name": "stderr", + "output_type": "stream", + "text": [ + ":89: RuntimeWarning: divide by zero encountered in divide\n", + ":89: RuntimeWarning: invalid value encountered in divide\n" + ] + }, + { + "name": "stdout", + "output_type": "stream", + "text": [ + "N_contact_pairs = 95\n", + "N_noncontact_cell_pairs = 95\n" + ] + }, + { + "name": "stderr", + "output_type": "stream", + "text": [ + ":89: RuntimeWarning: divide by zero encountered in divide\n", + ":89: RuntimeWarning: invalid value encountered in divide\n" + ] + }, + { + "name": "stdout", + "output_type": "stream", + "text": [ + "N_contact_pairs = 95\n", + "N_noncontact_cell_pairs = 95\n", + "BAM NN Microglia NN\n" + ] + }, + { + "name": "stderr", + "output_type": "stream", + "text": [ + ":89: RuntimeWarning: divide by zero encountered in divide\n", + ":89: RuntimeWarning: invalid value encountered in divide\n", + ":89: RuntimeWarning: divide by zero encountered in divide\n", + ":89: RuntimeWarning: invalid value encountered in divide\n" + ] + }, + { + "name": "stdout", + "output_type": "stream", + "text": [ + "N_contact_pairs = 188\n", + "N_noncontact_cell_pairs = 188\n", + "N_contact_pairs = 188\n", + "N_noncontact_cell_pairs = 188\n" + ] + }, + { + "name": "stderr", + "output_type": "stream", + "text": [ + ":89: RuntimeWarning: divide by zero encountered in divide\n", + ":89: RuntimeWarning: invalid value encountered in divide\n" + ] + }, + { + "name": "stdout", + "output_type": "stream", + "text": [ + "Thalamus\n" + ] + }, + { + "name": "stderr", + "output_type": "stream", + "text": [ + ":25: ImplicitModificationWarning: Trying to modify attribute `.obs` of view, initializing view as actual.\n", + ":28: ImplicitModificationWarning: Trying to modify attribute `.obs` of view, initializing view as actual.\n" + ] + }, + { + "name": "stdout", + "output_type": "stream", + "text": [ + "SMC NN SMC NN\n", + "N_contact_pairs = 1012\n", + "N_noncontact_cell_pairs = 1012\n", + "Ependymal NN Ependymal NN\n", + "N_contact_pairs = 2455\n", + "N_noncontact_cell_pairs = 1653\n", + "SMC NN VLMC NN\n", + "N_contact_pairs = 1263\n", + "N_noncontact_cell_pairs = 1263\n" + ] + }, + { + "name": "stderr", + "output_type": "stream", + "text": [ + ":89: RuntimeWarning: divide by zero encountered in divide\n", + ":89: RuntimeWarning: invalid value encountered in divide\n", + ":89: RuntimeWarning: divide by zero encountered in divide\n", + ":89: RuntimeWarning: invalid value encountered in divide\n", + ":89: RuntimeWarning: divide by zero encountered in divide\n", + ":89: RuntimeWarning: invalid value encountered in divide\n", + ":89: RuntimeWarning: divide by zero encountered in divide\n", + ":89: RuntimeWarning: invalid value encountered in divide\n" + ] + }, + { + "name": "stdout", + "output_type": "stream", + "text": [ + "N_contact_pairs = 1263\n", + "N_noncontact_cell_pairs = 1263\n", + "MH Tac2 Glut MH Tac2 Glut\n", + "N_contact_pairs = 35203\n", + "N_noncontact_cell_pairs = 2080\n" + ] + }, + { + "name": "stderr", + "output_type": "stream", + "text": [ + ":89: RuntimeWarning: divide by zero encountered in divide\n", + ":89: RuntimeWarning: invalid value encountered in divide\n" + ] + }, + { + "name": "stdout", + "output_type": "stream", + "text": [ + "VLMC NN VLMC NN\n", + "N_contact_pairs = 1247\n", + "N_noncontact_cell_pairs = 1247\n", + "Endo NN VLMC NN\n", + "N_contact_pairs = 2797\n", + "N_noncontact_cell_pairs = 2797\n" + ] + }, + { + "name": "stderr", + "output_type": "stream", + "text": [ + ":89: RuntimeWarning: divide by zero encountered in divide\n", + ":89: RuntimeWarning: invalid value encountered in divide\n", + ":89: RuntimeWarning: divide by zero encountered in divide\n", + ":89: RuntimeWarning: invalid value encountered in divide\n" + ] + }, + { + "name": "stdout", + "output_type": "stream", + "text": [ + "N_contact_pairs = 2797\n", + "N_noncontact_cell_pairs = 2797\n", + "Endo NN SMC NN\n" + ] + }, + { + "name": "stderr", + "output_type": "stream", + "text": [ + ":89: RuntimeWarning: divide by zero encountered in divide\n", + ":89: RuntimeWarning: invalid value encountered in divide\n" + ] + }, + { + "name": "stdout", + "output_type": "stream", + "text": [ + "N_contact_pairs = 2022\n", + "N_noncontact_cell_pairs = 2022\n" + ] + }, + { + "name": "stderr", + "output_type": "stream", + "text": [ + ":89: RuntimeWarning: divide by zero encountered in divide\n", + ":89: RuntimeWarning: invalid value encountered in divide\n" + ] + }, + { + "name": "stdout", + "output_type": "stream", + "text": [ + "N_contact_pairs = 2022\n", + "N_noncontact_cell_pairs = 2022\n", + "BAM NN VLMC NN\n", + "N_contact_pairs = 461\n", + "N_noncontact_cell_pairs = 461\n", + "N_contact_pairs = 461\n", + "N_noncontact_cell_pairs = 461\n", + "RT-ZI Gnb3 Gaba RT-ZI Gnb3 Gaba\n" + ] + }, + { + "name": "stderr", + "output_type": "stream", + "text": [ + ":89: RuntimeWarning: divide by zero encountered in divide\n", + ":89: RuntimeWarning: invalid value encountered in divide\n", + ":89: RuntimeWarning: divide by zero encountered in divide\n", + ":89: RuntimeWarning: invalid value encountered in divide\n", + ":89: RuntimeWarning: divide by zero encountered in divide\n", + ":89: RuntimeWarning: invalid value encountered in divide\n" + ] + }, + { + "name": "stdout", + "output_type": "stream", + "text": [ + "N_contact_pairs = 9844\n", + "N_noncontact_cell_pairs = 9844\n" + ] + }, + { + "name": "stderr", + "output_type": "stream", + "text": [ + ":89: RuntimeWarning: divide by zero encountered in divide\n", + ":89: RuntimeWarning: invalid value encountered in divide\n" + ] + }, + { + "name": "stdout", + "output_type": "stream", + "text": [ + "Oligo NN Oligo NN\n", + "N_contact_pairs = 38774\n", + "N_noncontact_cell_pairs = 38774\n" + ] + }, + { + "name": "stderr", + "output_type": "stream", + "text": [ + ":89: RuntimeWarning: divide by zero encountered in divide\n", + ":89: RuntimeWarning: invalid value encountered in divide\n" + ] + }, + { + "name": "stdout", + "output_type": "stream", + "text": [ + "Endo NN Peri NN\n", + "N_contact_pairs = 3972\n", + "N_noncontact_cell_pairs = 3972\n" + ] + }, + { + "name": "stderr", + "output_type": "stream", + "text": [ + ":89: RuntimeWarning: divide by zero encountered in divide\n", + ":89: RuntimeWarning: invalid value encountered in divide\n" + ] + }, + { + "name": "stdout", + "output_type": "stream", + "text": [ + "N_contact_pairs = 3972\n", + "N_noncontact_cell_pairs = 3972\n", + "BAM NN Endo NN\n" + ] + }, + { + "name": "stderr", + "output_type": "stream", + "text": [ + ":89: RuntimeWarning: divide by zero encountered in divide\n", + ":89: RuntimeWarning: invalid value encountered in divide\n" + ] + }, + { + "name": "stdout", + "output_type": "stream", + "text": [ + "N_contact_pairs = 674\n", + "N_noncontact_cell_pairs = 674\n" + ] + }, + { + "name": "stderr", + "output_type": "stream", + "text": [ + ":89: RuntimeWarning: divide by zero encountered in divide\n", + ":89: RuntimeWarning: invalid value encountered in divide\n" + ] + }, + { + "name": "stdout", + "output_type": "stream", + "text": [ + "N_contact_pairs = 674\n", + "N_noncontact_cell_pairs = 674\n", + "BAM NN SMC NN\n", + "N_contact_pairs = 191\n", + "N_noncontact_cell_pairs = 191\n", + "N_contact_pairs = 191\n", + "N_noncontact_cell_pairs = 191\n", + "CHOR NN CHOR NN\n", + "N_contact_pairs = 300\n", + "N_noncontact_cell_pairs = 36\n", + "Endo NN Endo NN\n" + ] + }, + { + "name": "stderr", + "output_type": "stream", + "text": [ + ":89: RuntimeWarning: divide by zero encountered in divide\n", + ":89: RuntimeWarning: invalid value encountered in divide\n", + ":89: RuntimeWarning: divide by zero encountered in divide\n", + ":89: RuntimeWarning: invalid value encountered in divide\n", + ":89: RuntimeWarning: divide by zero encountered in divide\n", + ":89: RuntimeWarning: invalid value encountered in divide\n", + ":89: RuntimeWarning: divide by zero encountered in divide\n", + ":89: RuntimeWarning: invalid value encountered in divide\n" + ] + }, + { + "name": "stdout", + "output_type": "stream", + "text": [ + "N_contact_pairs = 9493\n", + "N_noncontact_cell_pairs = 9493\n" + ] + }, + { + "name": "stderr", + "output_type": "stream", + "text": [ + ":89: RuntimeWarning: divide by zero encountered in divide\n", + ":89: RuntimeWarning: invalid value encountered in divide\n" + ] + }, + { + "name": "stdout", + "output_type": "stream", + "text": [ + "PVT-PT Ntrk1 Glut PVT-PT Ntrk1 Glut\n", + "N_contact_pairs = 5140\n", + "N_noncontact_cell_pairs = 5140\n" + ] + }, + { + "name": "stderr", + "output_type": "stream", + "text": [ + ":89: RuntimeWarning: divide by zero encountered in divide\n", + ":89: RuntimeWarning: invalid value encountered in divide\n", + ":89: RuntimeWarning: divide by zero encountered in divide\n", + ":89: RuntimeWarning: invalid value encountered in divide\n", + ":89: RuntimeWarning: divide by zero encountered in divide\n", + ":89: RuntimeWarning: invalid value encountered in divide\n", + ":89: RuntimeWarning: divide by zero encountered in divide\n", + ":89: RuntimeWarning: invalid value encountered in divide\n" + ] + }, + { + "name": "stdout", + "output_type": "stream", + "text": [ + "BAM NN BAM NN\n", + "N_contact_pairs = 56\n", + "N_noncontact_cell_pairs = 56\n", + "ZI Pax6 Gaba ZI Pax6 Gaba\n", + "N_contact_pairs = 610\n", + "N_noncontact_cell_pairs = 610\n", + "LH Pou4f1 Sox1 Glut LH Pou4f1 Sox1 Glut\n", + "N_contact_pairs = 2004\n", + "N_noncontact_cell_pairs = 2004\n", + "SPA-SPFm-SPFp-POL-PIL-PoT Sp9 Glut SPA-SPFm-SPFp-POL-PIL-PoT Sp9 Glut\n", + "N_contact_pairs = 1455\n", + "N_noncontact_cell_pairs = 1455\n", + "BST-po Iigp1 Glut BST-po Iigp1 Glut\n" + ] + }, + { + "name": "stderr", + "output_type": "stream", + "text": [ + ":89: RuntimeWarning: divide by zero encountered in divide\n", + ":89: RuntimeWarning: invalid value encountered in divide\n", + ":89: RuntimeWarning: divide by zero encountered in divide\n", + ":89: RuntimeWarning: invalid value encountered in divide\n", + ":89: RuntimeWarning: divide by zero encountered in divide\n", + ":89: RuntimeWarning: invalid value encountered in divide\n" + ] + }, + { + "name": "stdout", + "output_type": "stream", + "text": [ + "N_contact_pairs = 272\n", + "N_noncontact_cell_pairs = 272\n", + "CM-IAD-CL-PCN Sema5b Glut CM-IAD-CL-PCN Sema5b Glut\n", + "N_contact_pairs = 1149\n", + "N_noncontact_cell_pairs = 1149\n", + "PF Fzd5 Glut PF Fzd5 Glut\n", + "N_contact_pairs = 4824\n", + "N_noncontact_cell_pairs = 4824\n" + ] + }, + { + "name": "stderr", + "output_type": "stream", + "text": [ + ":89: RuntimeWarning: divide by zero encountered in divide\n", + ":89: RuntimeWarning: invalid value encountered in divide\n" + ] + }, + { + "name": "stdout", + "output_type": "stream", + "text": [ + "Astro-NT NN Endo NN\n", + "N_contact_pairs = 16884\n", + "N_noncontact_cell_pairs = 16884\n" + ] + }, + { + "name": "stderr", + "output_type": "stream", + "text": [ + ":89: RuntimeWarning: divide by zero encountered in divide\n", + ":89: RuntimeWarning: invalid value encountered in divide\n" + ] + }, + { + "name": "stdout", + "output_type": "stream", + "text": [ + "N_contact_pairs = 16884\n", + "N_noncontact_cell_pairs = 16884\n" + ] + }, + { + "name": "stderr", + "output_type": "stream", + "text": [ + ":89: RuntimeWarning: divide by zero encountered in divide\n", + ":89: RuntimeWarning: invalid value encountered in divide\n", + ":89: RuntimeWarning: divide by zero encountered in divide\n", + ":89: RuntimeWarning: invalid value encountered in divide\n" + ] + }, + { + "name": "stdout", + "output_type": "stream", + "text": [ + "AD Serpinb7 Glut AD Serpinb7 Glut\n", + "N_contact_pairs = 1035\n", + "N_noncontact_cell_pairs = 1035\n", + "Microglia NN Oligo NN\n", + "N_contact_pairs = 7819\n", + "N_noncontact_cell_pairs = 7819\n" + ] + }, + { + "name": "stderr", + "output_type": "stream", + "text": [ + ":89: RuntimeWarning: divide by zero encountered in divide\n", + ":89: RuntimeWarning: invalid value encountered in divide\n" + ] + }, + { + "name": "stdout", + "output_type": "stream", + "text": [ + "N_contact_pairs = 7819\n", + "N_noncontact_cell_pairs = 7819\n" + ] + }, + { + "name": "stderr", + "output_type": "stream", + "text": [ + ":89: RuntimeWarning: divide by zero encountered in divide\n", + ":89: RuntimeWarning: invalid value encountered in divide\n", + ":89: RuntimeWarning: divide by zero encountered in divide\n", + ":89: RuntimeWarning: invalid value encountered in divide\n" + ] + }, + { + "name": "stdout", + "output_type": "stream", + "text": [ + "OPC NN OPC NN\n", + "N_contact_pairs = 734\n", + "N_noncontact_cell_pairs = 734\n", + "Astro-NT NN Oligo NN\n", + "N_contact_pairs = 27758\n", + "N_noncontact_cell_pairs = 27758\n" + ] + }, + { + "name": "stderr", + "output_type": "stream", + "text": [ + ":89: RuntimeWarning: divide by zero encountered in divide\n", + ":89: RuntimeWarning: invalid value encountered in divide\n" + ] + }, + { + "name": "stdout", + "output_type": "stream", + "text": [ + "N_contact_pairs = 27758\n", + "N_noncontact_cell_pairs = 27758\n" + ] + }, + { + "name": "stderr", + "output_type": "stream", + "text": [ + ":89: RuntimeWarning: divide by zero encountered in divide\n", + ":89: RuntimeWarning: invalid value encountered in divide\n" + ] + }, + { + "name": "stdout", + "output_type": "stream", + "text": [ + "Peri NN VLMC NN\n", + "N_contact_pairs = 271\n", + "N_noncontact_cell_pairs = 271\n", + "N_contact_pairs = 271\n", + "N_noncontact_cell_pairs = 271\n", + "Endo NN Microglia NN\n" + ] + }, + { + "name": "stderr", + "output_type": "stream", + "text": [ + ":89: RuntimeWarning: divide by zero encountered in divide\n", + ":89: RuntimeWarning: invalid value encountered in divide\n", + ":89: RuntimeWarning: divide by zero encountered in divide\n", + ":89: RuntimeWarning: invalid value encountered in divide\n" + ] + }, + { + "name": "stdout", + "output_type": "stream", + "text": [ + "N_contact_pairs = 4297\n", + "N_noncontact_cell_pairs = 4297\n" + ] + }, + { + "name": "stderr", + "output_type": "stream", + "text": [ + ":89: RuntimeWarning: divide by zero encountered in divide\n", + ":89: RuntimeWarning: invalid value encountered in divide\n" + ] + }, + { + "name": "stdout", + "output_type": "stream", + "text": [ + "N_contact_pairs = 4297\n", + "N_noncontact_cell_pairs = 4297\n" + ] + }, + { + "name": "stderr", + "output_type": "stream", + "text": [ + ":89: RuntimeWarning: divide by zero encountered in divide\n", + ":89: RuntimeWarning: invalid value encountered in divide\n", + ":89: RuntimeWarning: divide by zero encountered in divide\n", + ":89: RuntimeWarning: invalid value encountered in divide\n", + ":89: RuntimeWarning: divide by zero encountered in divide\n", + ":89: RuntimeWarning: invalid value encountered in divide\n" + ] + }, + { + "name": "stdout", + "output_type": "stream", + "text": [ + "CHOR NN VLMC NN\n", + "N_contact_pairs = 100\n", + "N_noncontact_cell_pairs = 100\n", + "N_contact_pairs = 100\n", + "N_noncontact_cell_pairs = 100\n", + "Astro-NT NN RT-ZI Gnb3 Gaba\n", + "N_contact_pairs = 4936\n", + "N_noncontact_cell_pairs = 4936\n" + ] + }, + { + "name": "stderr", + "output_type": "stream", + "text": [ + ":89: RuntimeWarning: divide by zero encountered in divide\n", + ":89: RuntimeWarning: invalid value encountered in divide\n" + ] + }, + { + "name": "stdout", + "output_type": "stream", + "text": [ + "N_contact_pairs = 4936\n", + "N_noncontact_cell_pairs = 4936\n" + ] + }, + { + "name": "stderr", + "output_type": "stream", + "text": [ + ":89: RuntimeWarning: divide by zero encountered in divide\n", + ":89: RuntimeWarning: invalid value encountered in divide\n" + ] + }, + { + "name": "stdout", + "output_type": "stream", + "text": [ + "Endo NN RT-ZI Gnb3 Gaba\n", + "N_contact_pairs = 4503\n", + "N_noncontact_cell_pairs = 4503\n" + ] + }, + { + "name": "stderr", + "output_type": "stream", + "text": [ + ":89: RuntimeWarning: divide by zero encountered in divide\n", + ":89: RuntimeWarning: invalid value encountered in divide\n" + ] + }, + { + "name": "stdout", + "output_type": "stream", + "text": [ + "N_contact_pairs = 4503\n", + "N_noncontact_cell_pairs = 4503\n" + ] + }, + { + "name": "stderr", + "output_type": "stream", + "text": [ + ":89: RuntimeWarning: divide by zero encountered in divide\n", + ":89: RuntimeWarning: invalid value encountered in divide\n", + ":89: RuntimeWarning: divide by zero encountered in divide\n", + ":89: RuntimeWarning: invalid value encountered in divide\n" + ] + }, + { + "name": "stdout", + "output_type": "stream", + "text": [ + "LGv-SPFp-SPFm Nkx2-2 Tcf7l2 Gaba LGv-SPFp-SPFm Nkx2-2 Tcf7l2 Gaba\n", + "N_contact_pairs = 398\n", + "N_noncontact_cell_pairs = 398\n", + "Astro-NT NN ZI Pax6 Gaba\n", + "N_contact_pairs = 830\n", + "N_noncontact_cell_pairs = 830\n" + ] + }, + { + "name": "stderr", + "output_type": "stream", + "text": [ + ":89: RuntimeWarning: divide by zero encountered in divide\n", + ":89: RuntimeWarning: invalid value encountered in divide\n", + ":89: RuntimeWarning: divide by zero encountered in divide\n", + ":89: RuntimeWarning: invalid value encountered in divide\n" + ] + }, + { + "name": "stdout", + "output_type": "stream", + "text": [ + "N_contact_pairs = 830\n", + "N_noncontact_cell_pairs = 830\n", + "Astroependymal NN Astroependymal NN\n", + "N_contact_pairs = 67\n", + "N_noncontact_cell_pairs = 67\n", + "Astroependymal NN MH Tac2 Glut\n", + "N_contact_pairs = 950\n", + "N_noncontact_cell_pairs = 950\n" + ] + }, + { + "name": "stderr", + "output_type": "stream", + "text": [ + ":89: RuntimeWarning: divide by zero encountered in divide\n", + ":89: RuntimeWarning: invalid value encountered in divide\n", + ":89: RuntimeWarning: divide by zero encountered in divide\n", + ":89: RuntimeWarning: invalid value encountered in divide\n", + ":89: RuntimeWarning: divide by zero encountered in divide\n", + ":89: RuntimeWarning: invalid value encountered in divide\n" + ] + }, + { + "name": "stdout", + "output_type": "stream", + "text": [ + "N_contact_pairs = 950\n", + "N_noncontact_cell_pairs = 950\n", + "Astro-NT NN LGv-SPFp-SPFm Nkx2-2 Tcf7l2 Gaba\n", + "N_contact_pairs = 755\n", + "N_noncontact_cell_pairs = 755\n" + ] + }, + { + "name": "stderr", + "output_type": "stream", + "text": [ + ":89: RuntimeWarning: divide by zero encountered in divide\n", + ":89: RuntimeWarning: invalid value encountered in divide\n", + ":89: RuntimeWarning: divide by zero encountered in divide\n", + ":89: RuntimeWarning: invalid value encountered in divide\n" + ] + }, + { + "name": "stdout", + "output_type": "stream", + "text": [ + "N_contact_pairs = 755\n", + "N_noncontact_cell_pairs = 755\n", + "Endo NN ZI Pax6 Gaba\n", + "N_contact_pairs = 579\n", + "N_noncontact_cell_pairs = 579\n", + "N_contact_pairs = 579\n", + "N_noncontact_cell_pairs = 579\n" + ] + }, + { + "name": "stderr", + "output_type": "stream", + "text": [ + ":89: RuntimeWarning: divide by zero encountered in divide\n", + ":89: RuntimeWarning: invalid value encountered in divide\n", + ":89: RuntimeWarning: divide by zero encountered in divide\n", + ":89: RuntimeWarning: invalid value encountered in divide\n", + ":89: RuntimeWarning: divide by zero encountered in divide\n", + ":89: RuntimeWarning: invalid value encountered in divide\n" + ] + }, + { + "name": "stdout", + "output_type": "stream", + "text": [ + "PH Pitx2 Glut PH Pitx2 Glut\n", + "N_contact_pairs = 50\n", + "N_noncontact_cell_pairs = 50\n", + "Astro-NT NN SPA-SPFm-SPFp-POL-PIL-PoT Sp9 Glut\n", + "N_contact_pairs = 2010\n", + "N_noncontact_cell_pairs = 2010\n" + ] + }, + { + "name": "stderr", + "output_type": "stream", + "text": [ + ":89: RuntimeWarning: divide by zero encountered in divide\n", + ":89: RuntimeWarning: invalid value encountered in divide\n" + ] + }, + { + "name": "stdout", + "output_type": "stream", + "text": [ + "N_contact_pairs = 2010\n", + "N_noncontact_cell_pairs = 2010\n", + "Astroependymal NN VLMC NN\n", + "N_contact_pairs = 74\n", + "N_noncontact_cell_pairs = 74\n", + "N_contact_pairs = 74\n", + "N_noncontact_cell_pairs = 74\n", + "Astro-NT NN Astro-NT NN\n" + ] + }, + { + "name": "stderr", + "output_type": "stream", + "text": [ + ":89: RuntimeWarning: divide by zero encountered in divide\n", + ":89: RuntimeWarning: invalid value encountered in divide\n", + ":89: RuntimeWarning: divide by zero encountered in divide\n", + ":89: RuntimeWarning: invalid value encountered in divide\n", + ":89: RuntimeWarning: divide by zero encountered in divide\n", + ":89: RuntimeWarning: invalid value encountered in divide\n" + ] + }, + { + "name": "stdout", + "output_type": "stream", + "text": [ + "N_contact_pairs = 10390\n", + "N_noncontact_cell_pairs = 10390\n" + ] + }, + { + "name": "stderr", + "output_type": "stream", + "text": [ + ":89: RuntimeWarning: divide by zero encountered in divide\n", + ":89: RuntimeWarning: invalid value encountered in divide\n" + ] + }, + { + "name": "stdout", + "output_type": "stream", + "text": [ + "TH Prkcd Grin2c Glut TH Prkcd Grin2c Glut\n", + "N_contact_pairs = 33395\n", + "N_noncontact_cell_pairs = 33395\n" + ] + }, + { + "name": "stderr", + "output_type": "stream", + "text": [ + ":89: RuntimeWarning: divide by zero encountered in divide\n", + ":89: RuntimeWarning: invalid value encountered in divide\n" + ] + }, + { + "name": "stdout", + "output_type": "stream", + "text": [ + "RE-Xi Nox4 Glut RE-Xi Nox4 Glut\n", + "N_contact_pairs = 681\n", + "N_noncontact_cell_pairs = 681\n", + "Astro-NT NN Microglia NN\n" + ] + }, + { + "name": "stderr", + "output_type": "stream", + "text": [ + ":89: RuntimeWarning: divide by zero encountered in divide\n", + ":89: RuntimeWarning: invalid value encountered in divide\n" + ] + }, + { + "name": "stdout", + "output_type": "stream", + "text": [ + "N_contact_pairs = 4439\n", + "N_noncontact_cell_pairs = 4439\n" + ] + }, + { + "name": "stderr", + "output_type": "stream", + "text": [ + ":89: RuntimeWarning: divide by zero encountered in divide\n", + ":89: RuntimeWarning: invalid value encountered in divide\n" + ] + }, + { + "name": "stdout", + "output_type": "stream", + "text": [ + "N_contact_pairs = 4439\n", + "N_noncontact_cell_pairs = 4439\n" + ] + }, + { + "name": "stderr", + "output_type": "stream", + "text": [ + ":89: RuntimeWarning: divide by zero encountered in divide\n", + ":89: RuntimeWarning: invalid value encountered in divide\n", + ":89: RuntimeWarning: divide by zero encountered in divide\n", + ":89: RuntimeWarning: invalid value encountered in divide\n" + ] + }, + { + "name": "stdout", + "output_type": "stream", + "text": [ + "PRC-PAG Tcf7l2 Irx2 Glut PRC-PAG Tcf7l2 Irx2 Glut\n", + "N_contact_pairs = 53\n", + "N_noncontact_cell_pairs = 53\n", + "Astro-NT NN SMC NN\n", + "N_contact_pairs = 1020\n", + "N_noncontact_cell_pairs = 1020\n" + ] + }, + { + "name": "stderr", + "output_type": "stream", + "text": [ + ":89: RuntimeWarning: divide by zero encountered in divide\n", + ":89: RuntimeWarning: invalid value encountered in divide\n" + ] + }, + { + "name": "stdout", + "output_type": "stream", + "text": [ + "N_contact_pairs = 1020\n", + "N_noncontact_cell_pairs = 1020\n", + "Astroependymal NN Oligo NN\n" + ] + }, + { + "name": "stderr", + "output_type": "stream", + "text": [ + ":89: RuntimeWarning: divide by zero encountered in divide\n", + ":89: RuntimeWarning: invalid value encountered in divide\n" + ] + }, + { + "name": "stdout", + "output_type": "stream", + "text": [ + "N_contact_pairs = 199\n", + "N_noncontact_cell_pairs = 199\n" + ] + }, + { + "name": "stderr", + "output_type": "stream", + "text": [ + ":89: RuntimeWarning: divide by zero encountered in divide\n", + ":89: RuntimeWarning: invalid value encountered in divide\n" + ] + }, + { + "name": "stdout", + "output_type": "stream", + "text": [ + "N_contact_pairs = 199\n", + "N_noncontact_cell_pairs = 199\n", + "BAM NN Peri NN\n", + "N_contact_pairs = 75\n", + "N_noncontact_cell_pairs = 75\n" + ] + }, + { + "name": "stderr", + "output_type": "stream", + "text": [ + ":89: RuntimeWarning: divide by zero encountered in divide\n", + ":89: RuntimeWarning: invalid value encountered in divide\n", + ":89: RuntimeWarning: divide by zero encountered in divide\n", + ":89: RuntimeWarning: invalid value encountered in divide\n", + ":89: RuntimeWarning: divide by zero encountered in divide\n", + ":89: RuntimeWarning: invalid value encountered in divide\n" + ] + }, + { + "name": "stdout", + "output_type": "stream", + "text": [ + "N_contact_pairs = 75\n", + "N_noncontact_cell_pairs = 75\n", + "Astro-NT NN Peri NN\n", + "N_contact_pairs = 2832\n", + "N_noncontact_cell_pairs = 2832\n" + ] + }, + { + "name": "stderr", + "output_type": "stream", + "text": [ + ":89: RuntimeWarning: divide by zero encountered in divide\n", + ":89: RuntimeWarning: invalid value encountered in divide\n" + ] + }, + { + "name": "stdout", + "output_type": "stream", + "text": [ + "N_contact_pairs = 2832\n", + "N_noncontact_cell_pairs = 2832\n", + "LGv-ZI Otx2 Gaba LGv-ZI Otx2 Gaba\n", + "N_contact_pairs = 201\n", + "N_noncontact_cell_pairs = 201\n", + "OPC NN Oligo NN\n" + ] + }, + { + "name": "stderr", + "output_type": "stream", + "text": [ + ":89: RuntimeWarning: divide by zero encountered in divide\n", + ":89: RuntimeWarning: invalid value encountered in divide\n", + ":89: RuntimeWarning: divide by zero encountered in divide\n", + ":89: RuntimeWarning: invalid value encountered in divide\n" + ] + }, + { + "name": "stdout", + "output_type": "stream", + "text": [ + "N_contact_pairs = 7331\n", + "N_noncontact_cell_pairs = 7331\n" + ] + }, + { + "name": "stderr", + "output_type": "stream", + "text": [ + ":89: RuntimeWarning: divide by zero encountered in divide\n", + ":89: RuntimeWarning: invalid value encountered in divide\n" + ] + }, + { + "name": "stdout", + "output_type": "stream", + "text": [ + "N_contact_pairs = 7331\n", + "N_noncontact_cell_pairs = 7331\n" + ] + }, + { + "name": "stderr", + "output_type": "stream", + "text": [ + ":89: RuntimeWarning: divide by zero encountered in divide\n", + ":89: RuntimeWarning: invalid value encountered in divide\n", + ":89: RuntimeWarning: divide by zero encountered in divide\n", + ":89: RuntimeWarning: invalid value encountered in divide\n" + ] + }, + { + "name": "stdout", + "output_type": "stream", + "text": [ + "Peri NN Peri NN\n", + "N_contact_pairs = 280\n", + "N_noncontact_cell_pairs = 280\n", + "AD Serpinb7 Glut Astro-NT NN\n", + "N_contact_pairs = 665\n", + "N_noncontact_cell_pairs = 665\n" + ] + }, + { + "name": "stderr", + "output_type": "stream", + "text": [ + ":89: RuntimeWarning: divide by zero encountered in divide\n", + ":89: RuntimeWarning: invalid value encountered in divide\n" + ] + }, + { + "name": "stdout", + "output_type": "stream", + "text": [ + "N_contact_pairs = 665\n", + "N_noncontact_cell_pairs = 665\n", + "Oligo NN SPA-SPFm-SPFp-POL-PIL-PoT Sp9 Glut\n" + ] + }, + { + "name": "stderr", + "output_type": "stream", + "text": [ + ":89: RuntimeWarning: divide by zero encountered in divide\n", + ":89: RuntimeWarning: invalid value encountered in divide\n" + ] + }, + { + "name": "stdout", + "output_type": "stream", + "text": [ + "N_contact_pairs = 1769\n", + "N_noncontact_cell_pairs = 1769\n" + ] + }, + { + "name": "stderr", + "output_type": "stream", + "text": [ + ":89: RuntimeWarning: divide by zero encountered in divide\n", + ":89: RuntimeWarning: invalid value encountered in divide\n" + ] + }, + { + "name": "stdout", + "output_type": "stream", + "text": [ + "N_contact_pairs = 1769\n", + "N_noncontact_cell_pairs = 1769\n", + "MH Tac2 Glut OPC NN\n" + ] + }, + { + "name": "stderr", + "output_type": "stream", + "text": [ + ":89: RuntimeWarning: divide by zero encountered in divide\n", + ":89: RuntimeWarning: invalid value encountered in divide\n", + ":89: RuntimeWarning: divide by zero encountered in divide\n", + ":89: RuntimeWarning: invalid value encountered in divide\n" + ] + }, + { + "name": "stdout", + "output_type": "stream", + "text": [ + "N_contact_pairs = 1387\n", + "N_noncontact_cell_pairs = 1387\n", + "N_contact_pairs = 1387\n", + "N_noncontact_cell_pairs = 1387\n", + "Ependymal NN VLMC NN\n" + ] + }, + { + "name": "stderr", + "output_type": "stream", + "text": [ + ":89: RuntimeWarning: divide by zero encountered in divide\n", + ":89: RuntimeWarning: invalid value encountered in divide\n", + ":89: RuntimeWarning: divide by zero encountered in divide\n", + ":89: RuntimeWarning: invalid value encountered in divide\n", + ":89: RuntimeWarning: divide by zero encountered in divide\n", + ":89: RuntimeWarning: invalid value encountered in divide\n" + ] + }, + { + "name": "stdout", + "output_type": "stream", + "text": [ + "N_contact_pairs = 187\n", + "N_noncontact_cell_pairs = 187\n", + "N_contact_pairs = 187\n", + "N_noncontact_cell_pairs = 187\n", + "Endo NN LH Pou4f1 Sox1 Glut\n", + "N_contact_pairs = 1123\n", + "N_noncontact_cell_pairs = 1123\n" + ] + }, + { + "name": "stderr", + "output_type": "stream", + "text": [ + ":89: RuntimeWarning: divide by zero encountered in divide\n", + ":89: RuntimeWarning: invalid value encountered in divide\n", + ":89: RuntimeWarning: divide by zero encountered in divide\n", + ":89: RuntimeWarning: invalid value encountered in divide\n" + ] + }, + { + "name": "stdout", + "output_type": "stream", + "text": [ + "N_contact_pairs = 1123\n", + "N_noncontact_cell_pairs = 1123\n", + "Endo NN Oligo NN\n", + "N_contact_pairs = 27333\n", + "N_noncontact_cell_pairs = 27333\n" + ] + }, + { + "name": "stderr", + "output_type": "stream", + "text": [ + ":89: RuntimeWarning: divide by zero encountered in divide\n", + ":89: RuntimeWarning: invalid value encountered in divide\n" + ] + }, + { + "name": "stdout", + "output_type": "stream", + "text": [ + "N_contact_pairs = 27333\n", + "N_noncontact_cell_pairs = 27333\n" + ] + }, + { + "name": "stderr", + "output_type": "stream", + "text": [ + ":89: RuntimeWarning: divide by zero encountered in divide\n", + ":89: RuntimeWarning: invalid value encountered in divide\n" + ] + }, + { + "name": "stdout", + "output_type": "stream", + "text": [ + "Astro-NT NN VLMC NN\n", + "N_contact_pairs = 1137\n", + "N_noncontact_cell_pairs = 1137\n" + ] + }, + { + "name": "stderr", + "output_type": "stream", + "text": [ + ":89: RuntimeWarning: divide by zero encountered in divide\n", + ":89: RuntimeWarning: invalid value encountered in divide\n" + ] + }, + { + "name": "stdout", + "output_type": "stream", + "text": [ + "N_contact_pairs = 1137\n", + "N_noncontact_cell_pairs = 1137\n", + "Astroependymal NN Ependymal NN\n", + "N_contact_pairs = 97\n", + "N_noncontact_cell_pairs = 97\n", + "N_contact_pairs = 97\n", + "N_noncontact_cell_pairs = 97\n", + "Astro-NT NN OPC NN\n" + ] + }, + { + "name": "stderr", + "output_type": "stream", + "text": [ + ":89: RuntimeWarning: divide by zero encountered in divide\n", + ":89: RuntimeWarning: invalid value encountered in divide\n", + ":89: RuntimeWarning: divide by zero encountered in divide\n", + ":89: RuntimeWarning: invalid value encountered in divide\n", + ":89: RuntimeWarning: divide by zero encountered in divide\n", + ":89: RuntimeWarning: invalid value encountered in divide\n" + ] + }, + { + "name": "stdout", + "output_type": "stream", + "text": [ + "N_contact_pairs = 4310\n", + "N_noncontact_cell_pairs = 4310\n" + ] + }, + { + "name": "stderr", + "output_type": "stream", + "text": [ + ":89: RuntimeWarning: divide by zero encountered in divide\n", + ":89: RuntimeWarning: invalid value encountered in divide\n" + ] + }, + { + "name": "stdout", + "output_type": "stream", + "text": [ + "N_contact_pairs = 4310\n", + "N_noncontact_cell_pairs = 4310\n" + ] + }, + { + "name": "stderr", + "output_type": "stream", + "text": [ + ":89: RuntimeWarning: divide by zero encountered in divide\n", + ":89: RuntimeWarning: invalid value encountered in divide\n" + ] + }, + { + "name": "stdout", + "output_type": "stream", + "text": [ + "Oligo NN VLMC NN\n", + "N_contact_pairs = 1985\n", + "N_noncontact_cell_pairs = 1985\n" + ] + }, + { + "name": "stderr", + "output_type": "stream", + "text": [ + ":89: RuntimeWarning: divide by zero encountered in divide\n", + ":89: RuntimeWarning: invalid value encountered in divide\n" + ] + }, + { + "name": "stdout", + "output_type": "stream", + "text": [ + "N_contact_pairs = 1985\n", + "N_noncontact_cell_pairs = 1985\n", + "LGv-SPFp-SPFm Nkx2-2 Tcf7l2 Gaba Oligo NN\n" + ] + }, + { + "name": "stderr", + "output_type": "stream", + "text": [ + ":89: RuntimeWarning: divide by zero encountered in divide\n", + ":89: RuntimeWarning: invalid value encountered in divide\n" + ] + }, + { + "name": "stdout", + "output_type": "stream", + "text": [ + "N_contact_pairs = 934\n", + "N_noncontact_cell_pairs = 934\n" + ] + }, + { + "name": "stderr", + "output_type": "stream", + "text": [ + ":89: RuntimeWarning: divide by zero encountered in divide\n", + ":89: RuntimeWarning: invalid value encountered in divide\n" + ] + }, + { + "name": "stdout", + "output_type": "stream", + "text": [ + "N_contact_pairs = 934\n", + "N_noncontact_cell_pairs = 934\n", + "CHOR NN Ependymal NN\n", + "N_contact_pairs = 231\n", + "N_noncontact_cell_pairs = 231\n", + "N_contact_pairs = 231\n", + "N_noncontact_cell_pairs = 231\n", + "LH Pou4f1 Sox1 Glut Oligo NN\n" + ] + }, + { + "name": "stderr", + "output_type": "stream", + "text": [ + ":89: RuntimeWarning: divide by zero encountered in divide\n", + ":89: RuntimeWarning: invalid value encountered in divide\n", + ":89: RuntimeWarning: divide by zero encountered in divide\n", + ":89: RuntimeWarning: invalid value encountered in divide\n", + ":89: RuntimeWarning: divide by zero encountered in divide\n", + ":89: RuntimeWarning: invalid value encountered in divide\n" + ] + }, + { + "name": "stdout", + "output_type": "stream", + "text": [ + "N_contact_pairs = 1785\n", + "N_noncontact_cell_pairs = 1785\n" + ] + }, + { + "name": "stderr", + "output_type": "stream", + "text": [ + ":89: RuntimeWarning: divide by zero encountered in divide\n", + ":89: RuntimeWarning: invalid value encountered in divide\n" + ] + }, + { + "name": "stdout", + "output_type": "stream", + "text": [ + "N_contact_pairs = 1785\n", + "N_noncontact_cell_pairs = 1785\n", + "OPC NN ZI Pax6 Gaba\n" + ] + }, + { + "name": "stderr", + "output_type": "stream", + "text": [ + ":89: RuntimeWarning: divide by zero encountered in divide\n", + ":89: RuntimeWarning: invalid value encountered in divide\n", + ":89: RuntimeWarning: divide by zero encountered in divide\n", + ":89: RuntimeWarning: invalid value encountered in divide\n", + ":89: RuntimeWarning: divide by zero encountered in divide\n", + ":89: RuntimeWarning: invalid value encountered in divide\n" + ] + }, + { + "name": "stdout", + "output_type": "stream", + "text": [ + "N_contact_pairs = 172\n", + "N_noncontact_cell_pairs = 172\n", + "N_contact_pairs = 172\n", + "N_noncontact_cell_pairs = 172\n", + "AD Serpinb7 Glut Endo NN\n", + "N_contact_pairs = 604\n", + "N_noncontact_cell_pairs = 604\n" + ] + }, + { + "name": "stderr", + "output_type": "stream", + "text": [ + ":89: RuntimeWarning: divide by zero encountered in divide\n", + ":89: RuntimeWarning: invalid value encountered in divide\n" + ] + }, + { + "name": "stdout", + "output_type": "stream", + "text": [ + "N_contact_pairs = 604\n", + "N_noncontact_cell_pairs = 604\n", + "OPC NN SPA-SPFm-SPFp-POL-PIL-PoT Sp9 Glut\n", + "N_contact_pairs = 352\n", + "N_noncontact_cell_pairs = 352\n" + ] + }, + { + "name": "stderr", + "output_type": "stream", + "text": [ + ":89: RuntimeWarning: divide by zero encountered in divide\n", + ":89: RuntimeWarning: invalid value encountered in divide\n", + ":89: RuntimeWarning: divide by zero encountered in divide\n", + ":89: RuntimeWarning: invalid value encountered in divide\n", + ":89: RuntimeWarning: divide by zero encountered in divide\n", + ":89: RuntimeWarning: invalid value encountered in divide\n" + ] + }, + { + "name": "stdout", + "output_type": "stream", + "text": [ + "N_contact_pairs = 352\n", + "N_noncontact_cell_pairs = 352\n", + "Astro-NT NN LH Pou4f1 Sox1 Glut\n", + "N_contact_pairs = 1279\n", + "N_noncontact_cell_pairs = 1279\n" + ] + }, + { + "name": "stderr", + "output_type": "stream", + "text": [ + ":89: RuntimeWarning: divide by zero encountered in divide\n", + ":89: RuntimeWarning: invalid value encountered in divide\n", + ":89: RuntimeWarning: divide by zero encountered in divide\n", + ":89: RuntimeWarning: invalid value encountered in divide\n" + ] + }, + { + "name": "stdout", + "output_type": "stream", + "text": [ + "N_contact_pairs = 1279\n", + "N_noncontact_cell_pairs = 1279\n", + "Microglia NN Peri NN\n", + "N_contact_pairs = 706\n", + "N_noncontact_cell_pairs = 706\n" + ] + }, + { + "name": "stderr", + "output_type": "stream", + "text": [ + ":89: RuntimeWarning: divide by zero encountered in divide\n", + ":89: RuntimeWarning: invalid value encountered in divide\n", + ":89: RuntimeWarning: divide by zero encountered in divide\n", + ":89: RuntimeWarning: invalid value encountered in divide\n" + ] + }, + { + "name": "stdout", + "output_type": "stream", + "text": [ + "N_contact_pairs = 706\n", + "N_noncontact_cell_pairs = 706\n", + "Oligo NN Peri NN\n", + "N_contact_pairs = 4646\n", + "N_noncontact_cell_pairs = 4646\n" + ] + }, + { + "name": "stderr", + "output_type": "stream", + "text": [ + ":89: RuntimeWarning: divide by zero encountered in divide\n", + ":89: RuntimeWarning: invalid value encountered in divide\n" + ] + }, + { + "name": "stdout", + "output_type": "stream", + "text": [ + "N_contact_pairs = 4646\n", + "N_noncontact_cell_pairs = 4646\n" + ] + }, + { + "name": "stderr", + "output_type": "stream", + "text": [ + ":89: RuntimeWarning: divide by zero encountered in divide\n", + ":89: RuntimeWarning: invalid value encountered in divide\n", + ":89: RuntimeWarning: divide by zero encountered in divide\n", + ":89: RuntimeWarning: invalid value encountered in divide\n" + ] + }, + { + "name": "stdout", + "output_type": "stream", + "text": [ + "Microglia NN VLMC NN\n", + "N_contact_pairs = 279\n", + "N_noncontact_cell_pairs = 279\n", + "N_contact_pairs = 279\n", + "N_noncontact_cell_pairs = 279\n", + "Endo NN Lymphoid NN\n" + ] + }, + { + "name": "stderr", + "output_type": "stream", + "text": [ + ":89: RuntimeWarning: divide by zero encountered in divide\n", + ":89: RuntimeWarning: invalid value encountered in divide\n", + ":89: RuntimeWarning: divide by zero encountered in divide\n", + ":89: RuntimeWarning: invalid value encountered in divide\n" + ] + }, + { + "name": "stdout", + "output_type": "stream", + "text": [ + "N_contact_pairs = 82\n", + "N_noncontact_cell_pairs = 82\n", + "N_contact_pairs = 82\n", + "N_noncontact_cell_pairs = 82\n" + ] + }, + { + "name": "stderr", + "output_type": "stream", + "text": [ + ":89: RuntimeWarning: divide by zero encountered in divide\n", + ":89: RuntimeWarning: invalid value encountered in divide\n", + ":89: RuntimeWarning: divide by zero encountered in divide\n", + ":89: RuntimeWarning: invalid value encountered in divide\n", + ":89: RuntimeWarning: divide by zero encountered in divide\n", + ":89: RuntimeWarning: invalid value encountered in divide\n" + ] + }, + { + "name": "stdout", + "output_type": "stream", + "text": [ + "AV Col27a1 Glut AV Col27a1 Glut\n", + "N_contact_pairs = 716\n", + "N_noncontact_cell_pairs = 716\n", + "AV Col27a1 Glut Endo NN\n", + "N_contact_pairs = 936\n", + "N_noncontact_cell_pairs = 936\n", + "N_contact_pairs = 936\n", + "N_noncontact_cell_pairs = 936\n", + "MH Tac2 Glut Microglia NN\n", + "N_contact_pairs = 711\n", + "N_noncontact_cell_pairs = 711\n" + ] + }, + { + "name": "stderr", + "output_type": "stream", + "text": [ + ":89: RuntimeWarning: divide by zero encountered in divide\n", + ":89: RuntimeWarning: invalid value encountered in divide\n", + ":89: RuntimeWarning: divide by zero encountered in divide\n", + ":89: RuntimeWarning: invalid value encountered in divide\n" + ] + }, + { + "name": "stdout", + "output_type": "stream", + "text": [ + "N_contact_pairs = 711\n", + "N_noncontact_cell_pairs = 711\n", + "LH Pou4f1 Sox1 Glut Peri NN\n", + "N_contact_pairs = 205\n", + "N_noncontact_cell_pairs = 205\n", + "N_contact_pairs = 205\n", + "N_noncontact_cell_pairs = 205\n", + "Astro-NT NN PRC-PAG Tcf7l2 Irx2 Glut\n" + ] + }, + { + "name": "stderr", + "output_type": "stream", + "text": [ + ":89: RuntimeWarning: divide by zero encountered in divide\n", + ":89: RuntimeWarning: invalid value encountered in divide\n", + ":89: RuntimeWarning: divide by zero encountered in divide\n", + ":89: RuntimeWarning: invalid value encountered in divide\n", + ":89: RuntimeWarning: divide by zero encountered in divide\n", + ":89: RuntimeWarning: invalid value encountered in divide\n" + ] + }, + { + "name": "stdout", + "output_type": "stream", + "text": [ + "N_contact_pairs = 181\n", + "N_noncontact_cell_pairs = 181\n", + "N_contact_pairs = 181\n", + "N_noncontact_cell_pairs = 181\n" + ] + }, + { + "name": "stderr", + "output_type": "stream", + "text": [ + ":89: RuntimeWarning: divide by zero encountered in divide\n", + ":89: RuntimeWarning: invalid value encountered in divide\n", + ":89: RuntimeWarning: divide by zero encountered in divide\n", + ":89: RuntimeWarning: invalid value encountered in divide\n" + ] + }, + { + "name": "stdout", + "output_type": "stream", + "text": [ + "LGv-ZI Otx2 Gaba Oligo NN\n", + "N_contact_pairs = 746\n", + "N_noncontact_cell_pairs = 746\n" + ] + }, + { + "name": "stderr", + "output_type": "stream", + "text": [ + ":89: RuntimeWarning: divide by zero encountered in divide\n", + ":89: RuntimeWarning: invalid value encountered in divide\n" + ] + }, + { + "name": "stdout", + "output_type": "stream", + "text": [ + "N_contact_pairs = 746\n", + "N_noncontact_cell_pairs = 746\n" + ] + }, + { + "name": "stderr", + "output_type": "stream", + "text": [ + ":89: RuntimeWarning: divide by zero encountered in divide\n", + ":89: RuntimeWarning: invalid value encountered in divide\n" + ] + }, + { + "name": "stdout", + "output_type": "stream", + "text": [ + "Ventricular_systems\n" + ] + }, + { + "name": "stderr", + "output_type": "stream", + "text": [ + ":25: ImplicitModificationWarning: Trying to modify attribute `.obs` of view, initializing view as actual.\n", + ":28: ImplicitModificationWarning: Trying to modify attribute `.obs` of view, initializing view as actual.\n" + ] + }, + { + "name": "stdout", + "output_type": "stream", + "text": [ + "Ependymal NN Ependymal NN\n", + "N_contact_pairs = 50015\n", + "N_noncontact_cell_pairs = 50015\n" + ] + }, + { + "name": "stderr", + "output_type": "stream", + "text": [ + ":89: RuntimeWarning: divide by zero encountered in divide\n", + ":89: RuntimeWarning: invalid value encountered in divide\n" + ] + }, + { + "name": "stdout", + "output_type": "stream", + "text": [ + "CHOR NN CHOR NN\n", + "N_contact_pairs = 64861\n", + "N_noncontact_cell_pairs = 12090\n" + ] + }, + { + "name": "stderr", + "output_type": "stream", + "text": [ + ":89: RuntimeWarning: divide by zero encountered in divide\n", + ":89: RuntimeWarning: invalid value encountered in divide\n" + ] + }, + { + "name": "stdout", + "output_type": "stream", + "text": [ + "OB-STR-CTX Inh IMN OB-STR-CTX Inh IMN\n", + "N_contact_pairs = 11407\n", + "N_noncontact_cell_pairs = 11407\n" + ] + }, + { + "name": "stderr", + "output_type": "stream", + "text": [ + ":89: RuntimeWarning: divide by zero encountered in divide\n", + ":89: RuntimeWarning: invalid value encountered in divide\n" + ] + }, + { + "name": "stdout", + "output_type": "stream", + "text": [ + "CHOR NN VLMC NN\n", + "N_contact_pairs = 13571\n", + "N_noncontact_cell_pairs = 13571\n" + ] + }, + { + "name": "stderr", + "output_type": "stream", + "text": [ + ":89: RuntimeWarning: divide by zero encountered in divide\n", + ":89: RuntimeWarning: invalid value encountered in divide\n" + ] + }, + { + "name": "stdout", + "output_type": "stream", + "text": [ + "N_contact_pairs = 13571\n", + "N_noncontact_cell_pairs = 13571\n" + ] + }, + { + "name": "stderr", + "output_type": "stream", + "text": [ + ":89: RuntimeWarning: divide by zero encountered in divide\n", + ":89: RuntimeWarning: invalid value encountered in divide\n" + ] + }, + { + "name": "stdout", + "output_type": "stream", + "text": [ + "Tanycyte NN Tanycyte NN\n", + "N_contact_pairs = 4720\n", + "N_noncontact_cell_pairs = 1035\n", + "VLMC NN VLMC NN\n", + "N_contact_pairs = 2595\n", + "N_noncontact_cell_pairs = 2595\n" + ] + }, + { + "name": "stderr", + "output_type": "stream", + "text": [ + ":89: RuntimeWarning: divide by zero encountered in divide\n", + ":89: RuntimeWarning: invalid value encountered in divide\n", + ":89: RuntimeWarning: divide by zero encountered in divide\n", + ":89: RuntimeWarning: invalid value encountered in divide\n" + ] + }, + { + "name": "stdout", + "output_type": "stream", + "text": [ + "Oligo NN Oligo NN\n", + "N_contact_pairs = 8146\n", + "N_noncontact_cell_pairs = 8146\n" + ] + }, + { + "name": "stderr", + "output_type": "stream", + "text": [ + ":89: RuntimeWarning: divide by zero encountered in divide\n", + ":89: RuntimeWarning: invalid value encountered in divide\n", + ":89: RuntimeWarning: divide by zero encountered in divide\n", + ":89: RuntimeWarning: invalid value encountered in divide\n" + ] + }, + { + "name": "stdout", + "output_type": "stream", + "text": [ + "MH Tac2 Glut MH Tac2 Glut\n", + "N_contact_pairs = 6932\n", + "N_noncontact_cell_pairs = 666\n", + "Endo NN VLMC NN\n", + "N_contact_pairs = 2373\n", + "N_noncontact_cell_pairs = 2373\n", + "N_contact_pairs = 2373\n", + "N_noncontact_cell_pairs = 2373\n", + "Endo NN Endo NN\n" + ] + }, + { + "name": "stderr", + "output_type": "stream", + "text": [ + ":89: RuntimeWarning: divide by zero encountered in divide\n", + ":89: RuntimeWarning: invalid value encountered in divide\n", + ":89: RuntimeWarning: divide by zero encountered in divide\n", + ":89: RuntimeWarning: invalid value encountered in divide\n" + ] + }, + { + "name": "stdout", + "output_type": "stream", + "text": [ + "N_contact_pairs = 1898\n", + "N_noncontact_cell_pairs = 1898\n", + "Astro-NT NN Astro-NT NN\n", + "N_contact_pairs = 3326\n", + "N_noncontact_cell_pairs = 3326\n" + ] + }, + { + "name": "stderr", + "output_type": "stream", + "text": [ + ":89: RuntimeWarning: divide by zero encountered in divide\n", + ":89: RuntimeWarning: invalid value encountered in divide\n", + ":89: RuntimeWarning: divide by zero encountered in divide\n", + ":89: RuntimeWarning: invalid value encountered in divide\n" + ] + }, + { + "name": "stdout", + "output_type": "stream", + "text": [ + "Ependymal NN OB-STR-CTX Inh IMN\n", + "N_contact_pairs = 5629\n", + "N_noncontact_cell_pairs = 5629\n" + ] + }, + { + "name": "stderr", + "output_type": "stream", + "text": [ + ":89: RuntimeWarning: divide by zero encountered in divide\n", + ":89: RuntimeWarning: invalid value encountered in divide\n" + ] + }, + { + "name": "stdout", + "output_type": "stream", + "text": [ + "N_contact_pairs = 5629\n", + "N_noncontact_cell_pairs = 5629\n" + ] + }, + { + "name": "stderr", + "output_type": "stream", + "text": [ + ":89: RuntimeWarning: divide by zero encountered in divide\n", + ":89: RuntimeWarning: invalid value encountered in divide\n", + ":89: RuntimeWarning: divide by zero encountered in divide\n", + ":89: RuntimeWarning: invalid value encountered in divide\n", + ":89: RuntimeWarning: divide by zero encountered in divide\n", + ":89: RuntimeWarning: invalid value encountered in divide\n" + ] + }, + { + "name": "stdout", + "output_type": "stream", + "text": [ + "Hypendymal NN Hypendymal NN\n", + "N_contact_pairs = 2045\n", + "N_noncontact_cell_pairs = 45\n", + "Endo NN SMC NN\n", + "N_contact_pairs = 502\n", + "N_noncontact_cell_pairs = 502\n", + "N_contact_pairs = 502\n", + "N_noncontact_cell_pairs = 502\n", + "Endo NN Peri NN\n" + ] + }, + { + "name": "stderr", + "output_type": "stream", + "text": [ + ":89: RuntimeWarning: divide by zero encountered in divide\n", + ":89: RuntimeWarning: invalid value encountered in divide\n", + ":89: RuntimeWarning: divide by zero encountered in divide\n", + ":89: RuntimeWarning: invalid value encountered in divide\n", + ":89: RuntimeWarning: divide by zero encountered in divide\n", + ":89: RuntimeWarning: invalid value encountered in divide\n" + ] + }, + { + "name": "stdout", + "output_type": "stream", + "text": [ + "N_contact_pairs = 707\n", + "N_noncontact_cell_pairs = 707\n", + "N_contact_pairs = 707\n", + "N_noncontact_cell_pairs = 707\n", + "BAM NN VLMC NN\n", + "N_contact_pairs = 780\n", + "N_noncontact_cell_pairs = 780\n" + ] + }, + { + "name": "stderr", + "output_type": "stream", + "text": [ + ":89: RuntimeWarning: divide by zero encountered in divide\n", + ":89: RuntimeWarning: invalid value encountered in divide\n", + ":89: RuntimeWarning: divide by zero encountered in divide\n", + ":89: RuntimeWarning: invalid value encountered in divide\n" + ] + }, + { + "name": "stdout", + "output_type": "stream", + "text": [ + "N_contact_pairs = 780\n", + "N_noncontact_cell_pairs = 780\n", + "BAM NN CHOR NN\n", + "N_contact_pairs = 2665\n", + "N_noncontact_cell_pairs = 2665\n" + ] + }, + { + "name": "stderr", + "output_type": "stream", + "text": [ + ":89: RuntimeWarning: divide by zero encountered in divide\n", + ":89: RuntimeWarning: invalid value encountered in divide\n", + ":89: RuntimeWarning: divide by zero encountered in divide\n", + ":89: RuntimeWarning: invalid value encountered in divide\n" + ] + }, + { + "name": "stdout", + "output_type": "stream", + "text": [ + "N_contact_pairs = 2665\n", + "N_noncontact_cell_pairs = 2665\n", + "ABC NN ABC NN\n", + "N_contact_pairs = 322\n", + "N_noncontact_cell_pairs = 322\n", + "SMC NN VLMC NN\n", + "N_contact_pairs = 479\n", + "N_noncontact_cell_pairs = 479\n" + ] + }, + { + "name": "stderr", + "output_type": "stream", + "text": [ + ":89: RuntimeWarning: divide by zero encountered in divide\n", + ":89: RuntimeWarning: invalid value encountered in divide\n", + ":89: RuntimeWarning: divide by zero encountered in divide\n", + ":89: RuntimeWarning: invalid value encountered in divide\n", + ":89: RuntimeWarning: divide by zero encountered in divide\n", + ":89: RuntimeWarning: invalid value encountered in divide\n" + ] + }, + { + "name": "stdout", + "output_type": "stream", + "text": [ + "N_contact_pairs = 479\n", + "N_noncontact_cell_pairs = 479\n", + "Ependymal NN Microglia NN\n", + "N_contact_pairs = 1600\n", + "N_noncontact_cell_pairs = 1600\n" + ] + }, + { + "name": "stderr", + "output_type": "stream", + "text": [ + ":89: RuntimeWarning: divide by zero encountered in divide\n", + ":89: RuntimeWarning: invalid value encountered in divide\n" + ] + }, + { + "name": "stdout", + "output_type": "stream", + "text": [ + "N_contact_pairs = 1600\n", + "N_noncontact_cell_pairs = 1600\n", + "ABC NN VLMC NN\n", + "N_contact_pairs = 580\n", + "N_noncontact_cell_pairs = 580\n", + "N_contact_pairs = 580\n", + "N_noncontact_cell_pairs = 580\n", + "CHOR NN Endo NN\n" + ] + }, + { + "name": "stderr", + "output_type": "stream", + "text": [ + ":89: RuntimeWarning: divide by zero encountered in divide\n", + ":89: RuntimeWarning: invalid value encountered in divide\n", + ":89: RuntimeWarning: divide by zero encountered in divide\n", + ":89: RuntimeWarning: invalid value encountered in divide\n", + ":89: RuntimeWarning: divide by zero encountered in divide\n", + ":89: RuntimeWarning: invalid value encountered in divide\n" + ] + }, + { + "name": "stdout", + "output_type": "stream", + "text": [ + "N_contact_pairs = 4718\n", + "N_noncontact_cell_pairs = 4718\n" + ] + }, + { + "name": "stderr", + "output_type": "stream", + "text": [ + ":89: RuntimeWarning: divide by zero encountered in divide\n", + ":89: RuntimeWarning: invalid value encountered in divide\n" + ] + }, + { + "name": "stdout", + "output_type": "stream", + "text": [ + "N_contact_pairs = 4718\n", + "N_noncontact_cell_pairs = 4718\n", + "SMC NN SMC NN\n", + "N_contact_pairs = 162\n", + "N_noncontact_cell_pairs = 162\n", + "PDTg Otp Olig3 Gaba PDTg Otp Olig3 Gaba\n" + ] + }, + { + "name": "stderr", + "output_type": "stream", + "text": [ + ":89: RuntimeWarning: divide by zero encountered in divide\n", + ":89: RuntimeWarning: invalid value encountered in divide\n", + ":89: RuntimeWarning: divide by zero encountered in divide\n", + ":89: RuntimeWarning: invalid value encountered in divide\n", + ":89: RuntimeWarning: divide by zero encountered in divide\n", + ":89: RuntimeWarning: invalid value encountered in divide\n", + ":89: RuntimeWarning: divide by zero encountered in divide\n", + ":89: RuntimeWarning: invalid value encountered in divide\n" + ] + }, + { + "name": "stdout", + "output_type": "stream", + "text": [ + "N_contact_pairs = 155\n", + "N_noncontact_cell_pairs = 36\n", + "OPC NN Oligo NN\n", + "N_contact_pairs = 1157\n", + "N_noncontact_cell_pairs = 1157\n", + "N_contact_pairs = 1157\n", + "N_noncontact_cell_pairs = 1157\n", + "Peri NN VLMC NN\n", + "N_contact_pairs = 443\n", + "N_noncontact_cell_pairs = 443\n", + "N_contact_pairs = 443\n", + "N_noncontact_cell_pairs = 443\n", + "Astro-NT NN Endo NN\n" + ] + }, + { + "name": "stderr", + "output_type": "stream", + "text": [ + ":89: RuntimeWarning: divide by zero encountered in divide\n", + ":89: RuntimeWarning: invalid value encountered in divide\n", + ":89: RuntimeWarning: divide by zero encountered in divide\n", + ":89: RuntimeWarning: invalid value encountered in divide\n", + ":89: RuntimeWarning: divide by zero encountered in divide\n", + ":89: RuntimeWarning: invalid value encountered in divide\n" + ] + }, + { + "name": "stdout", + "output_type": "stream", + "text": [ + "N_contact_pairs = 1943\n", + "N_noncontact_cell_pairs = 1943\n", + "N_contact_pairs = 1943\n", + "N_noncontact_cell_pairs = 1943\n" + ] + }, + { + "name": "stderr", + "output_type": "stream", + "text": [ + ":89: RuntimeWarning: divide by zero encountered in divide\n", + ":89: RuntimeWarning: invalid value encountered in divide\n", + ":89: RuntimeWarning: divide by zero encountered in divide\n", + ":89: RuntimeWarning: invalid value encountered in divide\n", + ":89: RuntimeWarning: divide by zero encountered in divide\n", + ":89: RuntimeWarning: invalid value encountered in divide\n" + ] + }, + { + "name": "stdout", + "output_type": "stream", + "text": [ + "Pineal Crx Glut Pineal Crx Glut\n", + "N_contact_pairs = 405\n", + "N_noncontact_cell_pairs = 28\n", + "CHOR NN Peri NN\n", + "N_contact_pairs = 1498\n", + "N_noncontact_cell_pairs = 1498\n" + ] + }, + { + "name": "stderr", + "output_type": "stream", + "text": [ + ":89: RuntimeWarning: divide by zero encountered in divide\n", + ":89: RuntimeWarning: invalid value encountered in divide\n" + ] + }, + { + "name": "stdout", + "output_type": "stream", + "text": [ + "N_contact_pairs = 1498\n", + "N_noncontact_cell_pairs = 1498\n", + "Astro-NT NN Ependymal NN\n" + ] + }, + { + "name": "stderr", + "output_type": "stream", + "text": [ + ":89: RuntimeWarning: divide by zero encountered in divide\n", + ":89: RuntimeWarning: invalid value encountered in divide\n" + ] + }, + { + "name": "stdout", + "output_type": "stream", + "text": [ + "N_contact_pairs = 4813\n", + "N_noncontact_cell_pairs = 4813\n" + ] + }, + { + "name": "stderr", + "output_type": "stream", + "text": [ + ":89: RuntimeWarning: divide by zero encountered in divide\n", + ":89: RuntimeWarning: invalid value encountered in divide\n" + ] + }, + { + "name": "stdout", + "output_type": "stream", + "text": [ + "N_contact_pairs = 4813\n", + "N_noncontact_cell_pairs = 4813\n", + "Ependymal NN MEA-BST Sox6 Gaba\n" + ] + }, + { + "name": "stderr", + "output_type": "stream", + "text": [ + ":89: RuntimeWarning: divide by zero encountered in divide\n", + ":89: RuntimeWarning: invalid value encountered in divide\n" + ] + }, + { + "name": "stdout", + "output_type": "stream", + "text": [ + "N_contact_pairs = 376\n", + "N_noncontact_cell_pairs = 376\n", + "N_contact_pairs = 376\n", + "N_noncontact_cell_pairs = 376\n", + "Astro-NT NN Oligo NN\n" + ] + }, + { + "name": "stderr", + "output_type": "stream", + "text": [ + ":89: RuntimeWarning: divide by zero encountered in divide\n", + ":89: RuntimeWarning: invalid value encountered in divide\n", + ":89: RuntimeWarning: divide by zero encountered in divide\n", + ":89: RuntimeWarning: invalid value encountered in divide\n" + ] + }, + { + "name": "stdout", + "output_type": "stream", + "text": [ + "N_contact_pairs = 1835\n", + "N_noncontact_cell_pairs = 1835\n", + "N_contact_pairs = 1835\n", + "N_noncontact_cell_pairs = 1835\n" + ] + }, + { + "name": "stderr", + "output_type": "stream", + "text": [ + ":89: RuntimeWarning: divide by zero encountered in divide\n", + ":89: RuntimeWarning: invalid value encountered in divide\n", + ":89: RuntimeWarning: divide by zero encountered in divide\n", + ":89: RuntimeWarning: invalid value encountered in divide\n" + ] + }, + { + "name": "stdout", + "output_type": "stream", + "text": [ + "Bergmann NN Bergmann NN\n", + "N_contact_pairs = 307\n", + "N_noncontact_cell_pairs = 307\n", + "BAM NN Endo NN\n", + "N_contact_pairs = 400\n", + "N_noncontact_cell_pairs = 400\n", + "N_contact_pairs = 400\n", + "N_noncontact_cell_pairs = 400\n", + "Endo NN OB-STR-CTX Inh IMN\n" + ] + }, + { + "name": "stderr", + "output_type": "stream", + "text": [ + ":89: RuntimeWarning: divide by zero encountered in divide\n", + ":89: RuntimeWarning: invalid value encountered in divide\n", + ":89: RuntimeWarning: divide by zero encountered in divide\n", + ":89: RuntimeWarning: invalid value encountered in divide\n", + ":89: RuntimeWarning: divide by zero encountered in divide\n", + ":89: RuntimeWarning: invalid value encountered in divide\n" + ] + }, + { + "name": "stdout", + "output_type": "stream", + "text": [ + "N_contact_pairs = 763\n", + "N_noncontact_cell_pairs = 763\n", + "N_contact_pairs = 763\n", + "N_noncontact_cell_pairs = 763\n", + "CHOR NN Lymphoid NN\n" + ] + }, + { + "name": "stderr", + "output_type": "stream", + "text": [ + ":89: RuntimeWarning: divide by zero encountered in divide\n", + ":89: RuntimeWarning: invalid value encountered in divide\n", + ":89: RuntimeWarning: divide by zero encountered in divide\n", + ":89: RuntimeWarning: invalid value encountered in divide\n" + ] + }, + { + "name": "stdout", + "output_type": "stream", + "text": [ + "N_contact_pairs = 738\n", + "N_noncontact_cell_pairs = 738\n", + "N_contact_pairs = 738\n", + "N_noncontact_cell_pairs = 738\n", + "Ependymal NN Tanycyte NN\n" + ] + }, + { + "name": "stderr", + "output_type": "stream", + "text": [ + ":89: RuntimeWarning: divide by zero encountered in divide\n", + ":89: RuntimeWarning: invalid value encountered in divide\n", + ":89: RuntimeWarning: divide by zero encountered in divide\n", + ":89: RuntimeWarning: invalid value encountered in divide\n" + ] + }, + { + "name": "stdout", + "output_type": "stream", + "text": [ + "N_contact_pairs = 584\n", + "N_noncontact_cell_pairs = 584\n", + "N_contact_pairs = 584\n", + "N_noncontact_cell_pairs = 584\n", + "Astro-NT NN Microglia NN\n" + ] + }, + { + "name": "stderr", + "output_type": "stream", + "text": [ + ":89: RuntimeWarning: divide by zero encountered in divide\n", + ":89: RuntimeWarning: invalid value encountered in divide\n", + ":89: RuntimeWarning: divide by zero encountered in divide\n", + ":89: RuntimeWarning: invalid value encountered in divide\n", + ":89: RuntimeWarning: divide by zero encountered in divide\n", + ":89: RuntimeWarning: invalid value encountered in divide\n" + ] + }, + { + "name": "stdout", + "output_type": "stream", + "text": [ + "N_contact_pairs = 537\n", + "N_noncontact_cell_pairs = 537\n", + "N_contact_pairs = 537\n", + "N_noncontact_cell_pairs = 537\n", + "AVPV-MEPO-SFO Tbr1 Glut AVPV-MEPO-SFO Tbr1 Glut\n", + "N_contact_pairs = 270\n", + "N_noncontact_cell_pairs = 270\n", + "Microglia NN Oligo NN\n" + ] + }, + { + "name": "stderr", + "output_type": "stream", + "text": [ + ":89: RuntimeWarning: divide by zero encountered in divide\n", + ":89: RuntimeWarning: invalid value encountered in divide\n", + ":89: RuntimeWarning: divide by zero encountered in divide\n", + ":89: RuntimeWarning: invalid value encountered in divide\n", + ":89: RuntimeWarning: divide by zero encountered in divide\n", + ":89: RuntimeWarning: invalid value encountered in divide\n" + ] + }, + { + "name": "stdout", + "output_type": "stream", + "text": [ + "N_contact_pairs = 938\n", + "N_noncontact_cell_pairs = 938\n", + "N_contact_pairs = 938\n", + "N_noncontact_cell_pairs = 938\n", + "TRS-BAC Sln Glut TRS-BAC Sln Glut\n", + "N_contact_pairs = 288\n", + "N_noncontact_cell_pairs = 288\n", + "Astroependymal NN Astroependymal NN\n", + "N_contact_pairs = 255\n", + "N_noncontact_cell_pairs = 255\n", + "PVT-PT Ntrk1 Glut PVT-PT Ntrk1 Glut\n", + "N_contact_pairs = 304\n", + "N_noncontact_cell_pairs = 304\n" + ] + }, + { + "name": "stderr", + "output_type": "stream", + "text": [ + ":89: RuntimeWarning: divide by zero encountered in divide\n", + ":89: RuntimeWarning: invalid value encountered in divide\n", + ":89: RuntimeWarning: divide by zero encountered in divide\n", + ":89: RuntimeWarning: invalid value encountered in divide\n", + ":89: RuntimeWarning: divide by zero encountered in divide\n", + ":89: RuntimeWarning: invalid value encountered in divide\n", + ":89: RuntimeWarning: divide by zero encountered in divide\n", + ":89: RuntimeWarning: invalid value encountered in divide\n", + ":89: RuntimeWarning: divide by zero encountered in divide\n", + ":89: RuntimeWarning: invalid value encountered in divide\n" + ] + }, + { + "name": "stdout", + "output_type": "stream", + "text": [ + "MH Tac2 Glut Oligo NN\n", + "N_contact_pairs = 566\n", + "N_noncontact_cell_pairs = 566\n", + "N_contact_pairs = 566\n", + "N_noncontact_cell_pairs = 566\n", + "TU-ARH Otp Six6 Gaba TU-ARH Otp Six6 Gaba\n", + "N_contact_pairs = 79\n", + "N_noncontact_cell_pairs = 79\n", + "OB-STR-CTX Inh IMN Oligo NN\n" + ] + }, + { + "name": "stderr", + "output_type": "stream", + "text": [ + ":89: RuntimeWarning: divide by zero encountered in divide\n", + ":89: RuntimeWarning: invalid value encountered in divide\n", + ":89: RuntimeWarning: divide by zero encountered in divide\n", + ":89: RuntimeWarning: invalid value encountered in divide\n", + ":89: RuntimeWarning: divide by zero encountered in divide\n", + ":89: RuntimeWarning: invalid value encountered in divide\n" + ] + }, + { + "name": "stdout", + "output_type": "stream", + "text": [ + "N_contact_pairs = 1053\n", + "N_noncontact_cell_pairs = 1053\n", + "N_contact_pairs = 1053\n", + "N_noncontact_cell_pairs = 1053\n", + "Astro-NT NN OPC NN\n" + ] + }, + { + "name": "stderr", + "output_type": "stream", + "text": [ + ":89: RuntimeWarning: divide by zero encountered in divide\n", + ":89: RuntimeWarning: invalid value encountered in divide\n", + ":89: RuntimeWarning: divide by zero encountered in divide\n", + ":89: RuntimeWarning: invalid value encountered in divide\n", + ":89: RuntimeWarning: divide by zero encountered in divide\n", + ":89: RuntimeWarning: invalid value encountered in divide\n", + ":89: RuntimeWarning: divide by zero encountered in divide\n", + ":89: RuntimeWarning: invalid value encountered in divide\n" + ] + }, + { + "name": "stdout", + "output_type": "stream", + "text": [ + "N_contact_pairs = 524\n", + "N_noncontact_cell_pairs = 524\n", + "N_contact_pairs = 524\n", + "N_noncontact_cell_pairs = 524\n", + "LSX Prdm12 Zeb2 Gaba LSX Prdm12 Zeb2 Gaba\n", + "N_contact_pairs = 73\n", + "N_noncontact_cell_pairs = 73\n", + "AVPV-MEPO-SFO Tbr1 Glut PVR Six3 Sox3 Gaba\n", + "N_contact_pairs = 168\n", + "N_noncontact_cell_pairs = 168\n", + "N_contact_pairs = 168\n", + "N_noncontact_cell_pairs = 168\n", + "Microglia NN OB-STR-CTX Inh IMN\n" + ] + }, + { + "name": "stderr", + "output_type": "stream", + "text": [ + ":89: RuntimeWarning: divide by zero encountered in divide\n", + ":89: RuntimeWarning: invalid value encountered in divide\n", + ":89: RuntimeWarning: divide by zero encountered in divide\n", + ":89: RuntimeWarning: invalid value encountered in divide\n", + ":89: RuntimeWarning: divide by zero encountered in divide\n", + ":89: RuntimeWarning: invalid value encountered in divide\n", + ":89: RuntimeWarning: divide by zero encountered in divide\n", + ":89: RuntimeWarning: invalid value encountered in divide\n" + ] + }, + { + "name": "stdout", + "output_type": "stream", + "text": [ + "N_contact_pairs = 406\n", + "N_noncontact_cell_pairs = 406\n", + "N_contact_pairs = 406\n", + "N_noncontact_cell_pairs = 406\n", + "Endo NN Oligo NN\n", + "N_contact_pairs = 1849\n", + "N_noncontact_cell_pairs = 1849\n" + ] + }, + { + "name": "stderr", + "output_type": "stream", + "text": [ + ":89: RuntimeWarning: divide by zero encountered in divide\n", + ":89: RuntimeWarning: invalid value encountered in divide\n", + ":89: RuntimeWarning: divide by zero encountered in divide\n", + ":89: RuntimeWarning: invalid value encountered in divide\n", + ":89: RuntimeWarning: divide by zero encountered in divide\n", + ":89: RuntimeWarning: invalid value encountered in divide\n" + ] + }, + { + "name": "stdout", + "output_type": "stream", + "text": [ + "N_contact_pairs = 1849\n", + "N_noncontact_cell_pairs = 1849\n", + "PAS-MV Ebf2 Gly-Gaba PAS-MV Ebf2 Gly-Gaba\n", + "N_contact_pairs = 93\n", + "N_noncontact_cell_pairs = 93\n", + "Astroependymal NN Ependymal NN\n", + "N_contact_pairs = 423\n", + "N_noncontact_cell_pairs = 423\n" + ] + }, + { + "name": "stderr", + "output_type": "stream", + "text": [ + ":89: RuntimeWarning: divide by zero encountered in divide\n", + ":89: RuntimeWarning: invalid value encountered in divide\n" + ] + }, + { + "name": "stdout", + "output_type": "stream", + "text": [ + "N_contact_pairs = 423\n", + "N_noncontact_cell_pairs = 423\n", + "OPC NN OPC NN\n", + "N_contact_pairs = 114\n", + "N_noncontact_cell_pairs = 114\n", + "MM-ant Foxb1 Glut MM-ant Foxb1 Glut\n", + "N_contact_pairs = 272\n", + "N_noncontact_cell_pairs = 10\n", + "Ependymal NN Pineal Crx Glut\n" + ] + }, + { + "name": "stderr", + "output_type": "stream", + "text": [ + ":89: RuntimeWarning: divide by zero encountered in divide\n", + ":89: RuntimeWarning: invalid value encountered in divide\n", + ":89: RuntimeWarning: divide by zero encountered in divide\n", + ":89: RuntimeWarning: invalid value encountered in divide\n", + ":89: RuntimeWarning: divide by zero encountered in divide\n", + ":89: RuntimeWarning: invalid value encountered in divide\n" + ] + }, + { + "name": "stdout", + "output_type": "stream", + "text": [ + "N_contact_pairs = 164\n", + "N_noncontact_cell_pairs = 164\n", + "N_contact_pairs = 164\n", + "N_noncontact_cell_pairs = 164\n", + "Peri NN Peri NN\n", + "N_contact_pairs = 71\n", + "N_noncontact_cell_pairs = 71\n", + "NTS Dbh Glut NTS Dbh Glut\n", + "N_contact_pairs = 101\n", + "N_noncontact_cell_pairs = 101\n", + "Endo NN Microglia NN\n" + ] + }, + { + "name": "stderr", + "output_type": "stream", + "text": [ + ":89: RuntimeWarning: divide by zero encountered in divide\n", + ":89: RuntimeWarning: invalid value encountered in divide\n", + ":89: RuntimeWarning: divide by zero encountered in divide\n", + ":89: RuntimeWarning: invalid value encountered in divide\n", + ":89: RuntimeWarning: divide by zero encountered in divide\n", + ":89: RuntimeWarning: invalid value encountered in divide\n", + ":89: RuntimeWarning: divide by zero encountered in divide\n", + ":89: RuntimeWarning: invalid value encountered in divide\n", + ":89: RuntimeWarning: divide by zero encountered in divide\n", + ":89: RuntimeWarning: invalid value encountered in divide\n" + ] + }, + { + "name": "stdout", + "output_type": "stream", + "text": [ + "N_contact_pairs = 424\n", + "N_noncontact_cell_pairs = 424\n", + "N_contact_pairs = 424\n", + "N_noncontact_cell_pairs = 424\n", + "Endo NN MH Tac2 Glut\n", + "N_contact_pairs = 528\n", + "N_noncontact_cell_pairs = 528\n" + ] + }, + { + "name": "stderr", + "output_type": "stream", + "text": [ + ":89: RuntimeWarning: divide by zero encountered in divide\n", + ":89: RuntimeWarning: invalid value encountered in divide\n", + ":89: RuntimeWarning: divide by zero encountered in divide\n", + ":89: RuntimeWarning: invalid value encountered in divide\n", + ":89: RuntimeWarning: divide by zero encountered in divide\n", + ":89: RuntimeWarning: invalid value encountered in divide\n", + ":89: RuntimeWarning: divide by zero encountered in divide\n", + ":89: RuntimeWarning: invalid value encountered in divide\n", + ":89: RuntimeWarning: divide by zero encountered in divide\n", + ":89: RuntimeWarning: invalid value encountered in divide\n" + ] + }, + { + "name": "stdout", + "output_type": "stream", + "text": [ + "N_contact_pairs = 528\n", + "N_noncontact_cell_pairs = 528\n", + "Microglia NN Microglia NN\n", + "N_contact_pairs = 112\n", + "N_noncontact_cell_pairs = 112\n", + "AVPV-MEPO-SFO Tbr1 Glut Tanycyte NN\n", + "N_contact_pairs = 181\n", + "N_noncontact_cell_pairs = 181\n", + "N_contact_pairs = 181\n", + "N_noncontact_cell_pairs = 181\n", + "Ependymal NN TU-ARH Otp Six6 Gaba\n" + ] + }, + { + "name": "stderr", + "output_type": "stream", + "text": [ + ":89: RuntimeWarning: divide by zero encountered in divide\n", + ":89: RuntimeWarning: invalid value encountered in divide\n", + ":89: RuntimeWarning: divide by zero encountered in divide\n", + ":89: RuntimeWarning: invalid value encountered in divide\n" + ] + }, + { + "name": "stdout", + "output_type": "stream", + "text": [ + "N_contact_pairs = 133\n", + "N_noncontact_cell_pairs = 133\n", + "N_contact_pairs = 133\n", + "N_noncontact_cell_pairs = 133\n", + "MH Tac2 Glut OPC NN\n", + "N_contact_pairs = 405\n", + "N_noncontact_cell_pairs = 405\n" + ] + }, + { + "name": "stderr", + "output_type": "stream", + "text": [ + ":89: RuntimeWarning: divide by zero encountered in divide\n", + ":89: RuntimeWarning: invalid value encountered in divide\n", + ":89: RuntimeWarning: divide by zero encountered in divide\n", + ":89: RuntimeWarning: invalid value encountered in divide\n", + ":89: RuntimeWarning: divide by zero encountered in divide\n", + ":89: RuntimeWarning: invalid value encountered in divide\n", + ":89: RuntimeWarning: divide by zero encountered in divide\n", + ":89: RuntimeWarning: invalid value encountered in divide\n", + ":89: RuntimeWarning: divide by zero encountered in divide\n", + ":89: RuntimeWarning: invalid value encountered in divide\n", + ":89: RuntimeWarning: divide by zero encountered in divide\n", + ":89: RuntimeWarning: invalid value encountered in divide\n" + ] + }, + { + "name": "stdout", + "output_type": "stream", + "text": [ + "N_contact_pairs = 405\n", + "N_noncontact_cell_pairs = 405\n", + "Astroependymal NN MH Tac2 Glut\n", + "N_contact_pairs = 304\n", + "N_noncontact_cell_pairs = 304\n", + "N_contact_pairs = 304\n", + "N_noncontact_cell_pairs = 304\n", + "Lymphoid NN VLMC NN\n", + "N_contact_pairs = 141\n", + "N_noncontact_cell_pairs = 141\n", + "N_contact_pairs = 141\n", + "N_noncontact_cell_pairs = 141\n", + "PVR Six3 Sox3 Gaba Tanycyte NN\n", + "N_contact_pairs = 97\n", + "N_noncontact_cell_pairs = 97\n", + "N_contact_pairs = 97\n", + "N_noncontact_cell_pairs = 97\n" + ] + }, + { + "name": "stderr", + "output_type": "stream", + "text": [ + ":89: RuntimeWarning: divide by zero encountered in divide\n", + ":89: RuntimeWarning: invalid value encountered in divide\n", + ":89: RuntimeWarning: divide by zero encountered in divide\n", + ":89: RuntimeWarning: invalid value encountered in divide\n", + ":89: RuntimeWarning: divide by zero encountered in divide\n", + ":89: RuntimeWarning: invalid value encountered in divide\n", + ":89: RuntimeWarning: divide by zero encountered in divide\n", + ":89: RuntimeWarning: invalid value encountered in divide\n", + ":89: RuntimeWarning: divide by zero encountered in divide\n", + ":89: RuntimeWarning: invalid value encountered in divide\n", + ":89: RuntimeWarning: divide by zero encountered in divide\n", + ":89: RuntimeWarning: invalid value encountered in divide\n", + ":89: RuntimeWarning: divide by zero encountered in divide\n", + ":89: RuntimeWarning: invalid value encountered in divide\n" + ] + }, + { + "name": "stdout", + "output_type": "stream", + "text": [ + "BAM NN SMC NN\n", + "N_contact_pairs = 64\n", + "N_noncontact_cell_pairs = 64\n", + "N_contact_pairs = 64\n", + "N_noncontact_cell_pairs = 64\n", + "Astro-NT NN PAS-MV Ebf2 Gly-Gaba\n", + "N_contact_pairs = 164\n", + "N_noncontact_cell_pairs = 164\n", + "N_contact_pairs = 164\n", + "N_noncontact_cell_pairs = 164\n", + "Endo NN Lymphoid NN\n", + "N_contact_pairs = 89\n", + "N_noncontact_cell_pairs = 89\n", + "N_contact_pairs = 89\n", + "N_noncontact_cell_pairs = 89\n", + "BAM NN BAM NN\n", + "N_contact_pairs = 68\n", + "N_noncontact_cell_pairs = 68\n", + "ABC NN SMC NN\n", + "N_contact_pairs = 66\n", + "N_noncontact_cell_pairs = 66\n", + "N_contact_pairs = 66\n", + "N_noncontact_cell_pairs = 66\n", + "DCO UBC Glut DCO UBC Glut\n", + "N_contact_pairs = 142\n", + "N_noncontact_cell_pairs = 142\n", + "Astro-NT NN MM-ant Foxb1 Glut\n", + "N_contact_pairs = 124\n", + "N_noncontact_cell_pairs = 124\n" + ] + }, + { + "name": "stderr", + "output_type": "stream", + "text": [ + ":89: RuntimeWarning: divide by zero encountered in divide\n", + ":89: RuntimeWarning: invalid value encountered in divide\n", + ":89: RuntimeWarning: divide by zero encountered in divide\n", + ":89: RuntimeWarning: invalid value encountered in divide\n", + ":89: RuntimeWarning: divide by zero encountered in divide\n", + ":89: RuntimeWarning: invalid value encountered in divide\n", + ":89: RuntimeWarning: divide by zero encountered in divide\n", + ":89: RuntimeWarning: invalid value encountered in divide\n", + ":89: RuntimeWarning: divide by zero encountered in divide\n", + ":89: RuntimeWarning: invalid value encountered in divide\n", + ":89: RuntimeWarning: divide by zero encountered in divide\n", + ":89: RuntimeWarning: invalid value encountered in divide\n", + ":89: RuntimeWarning: divide by zero encountered in divide\n", + ":89: RuntimeWarning: invalid value encountered in divide\n" + ] + }, + { + "name": "stdout", + "output_type": "stream", + "text": [ + "N_contact_pairs = 124\n", + "N_noncontact_cell_pairs = 124\n", + "Astro-NT NN Peri NN\n", + "N_contact_pairs = 329\n", + "N_noncontact_cell_pairs = 329\n", + "N_contact_pairs = 329\n", + "N_noncontact_cell_pairs = 329\n", + "PAG-ND-PCG Onecut1 Gaba PAG-ND-PCG Onecut1 Gaba\n", + "N_contact_pairs = 35\n", + "N_noncontact_cell_pairs = 15\n", + "MM-ant Foxb1 Glut Oligo NN\n", + "N_contact_pairs = 56\n", + "N_noncontact_cell_pairs = 56\n" + ] + }, + { + "name": "stderr", + "output_type": "stream", + "text": [ + ":89: RuntimeWarning: divide by zero encountered in divide\n", + ":89: RuntimeWarning: invalid value encountered in divide\n", + ":89: RuntimeWarning: divide by zero encountered in divide\n", + ":89: RuntimeWarning: invalid value encountered in divide\n", + ":89: RuntimeWarning: divide by zero encountered in divide\n", + ":89: RuntimeWarning: invalid value encountered in divide\n", + ":89: RuntimeWarning: divide by zero encountered in divide\n", + ":89: RuntimeWarning: invalid value encountered in divide\n", + ":89: RuntimeWarning: divide by zero encountered in divide\n", + ":89: RuntimeWarning: invalid value encountered in divide\n" + ] + }, + { + "name": "stdout", + "output_type": "stream", + "text": [ + "N_contact_pairs = 56\n", + "N_noncontact_cell_pairs = 56\n", + "Astroependymal NN Oligo NN\n", + "N_contact_pairs = 161\n", + "N_noncontact_cell_pairs = 161\n", + "N_contact_pairs = 161\n", + "N_noncontact_cell_pairs = 161\n", + "Endo NN OPC NN\n" + ] + }, + { + "name": "stderr", + "output_type": "stream", + "text": [ + ":89: RuntimeWarning: divide by zero encountered in divide\n", + ":89: RuntimeWarning: invalid value encountered in divide\n", + ":89: RuntimeWarning: divide by zero encountered in divide\n", + ":89: RuntimeWarning: invalid value encountered in divide\n", + ":89: RuntimeWarning: divide by zero encountered in divide\n", + ":89: RuntimeWarning: invalid value encountered in divide\n" + ] + }, + { + "name": "stdout", + "output_type": "stream", + "text": [ + "N_contact_pairs = 314\n", + "N_noncontact_cell_pairs = 314\n", + "N_contact_pairs = 314\n", + "N_noncontact_cell_pairs = 314\n", + "DCO UBC Glut Ependymal NN\n", + "N_contact_pairs = 87\n", + "N_noncontact_cell_pairs = 87\n" + ] + }, + { + "name": "stderr", + "output_type": "stream", + "text": [ + ":89: RuntimeWarning: divide by zero encountered in divide\n", + ":89: RuntimeWarning: invalid value encountered in divide\n", + ":89: RuntimeWarning: divide by zero encountered in divide\n", + ":89: RuntimeWarning: invalid value encountered in divide\n", + ":89: RuntimeWarning: divide by zero encountered in divide\n", + ":89: RuntimeWarning: invalid value encountered in divide\n" + ] + }, + { + "name": "stdout", + "output_type": "stream", + "text": [ + "N_contact_pairs = 87\n", + "N_noncontact_cell_pairs = 87\n", + "AVPV-MEPO-SFO Tbr1 Glut Astro-NT NN\n", + "N_contact_pairs = 87\n", + "N_noncontact_cell_pairs = 87\n", + "N_contact_pairs = 87\n", + "N_noncontact_cell_pairs = 87\n", + "Oligo NN PAS-MV Ebf2 Gly-Gaba\n" + ] + }, + { + "name": "stderr", + "output_type": "stream", + "text": [ + ":89: RuntimeWarning: divide by zero encountered in divide\n", + ":89: RuntimeWarning: invalid value encountered in divide\n", + ":89: RuntimeWarning: divide by zero encountered in divide\n", + ":89: RuntimeWarning: invalid value encountered in divide\n", + ":89: RuntimeWarning: divide by zero encountered in divide\n", + ":89: RuntimeWarning: invalid value encountered in divide\n", + ":89: RuntimeWarning: divide by zero encountered in divide\n", + ":89: RuntimeWarning: invalid value encountered in divide\n" + ] + }, + { + "name": "stdout", + "output_type": "stream", + "text": [ + "N_contact_pairs = 55\n", + "N_noncontact_cell_pairs = 55\n", + "N_contact_pairs = 55\n", + "N_noncontact_cell_pairs = 55\n", + "Ependymal NN MH Tac2 Glut\n" + ] + }, + { + "name": "stderr", + "output_type": "stream", + "text": [ + ":89: RuntimeWarning: divide by zero encountered in divide\n", + ":89: RuntimeWarning: invalid value encountered in divide\n" + ] + }, + { + "name": "stdout", + "output_type": "stream", + "text": [ + "N_contact_pairs = 2482\n", + "N_noncontact_cell_pairs = 2482\n", + "N_contact_pairs = 2482\n", + "N_noncontact_cell_pairs = 2482\n" + ] + }, + { + "name": "stderr", + "output_type": "stream", + "text": [ + ":89: RuntimeWarning: divide by zero encountered in divide\n", + ":89: RuntimeWarning: invalid value encountered in divide\n", + ":89: RuntimeWarning: divide by zero encountered in divide\n", + ":89: RuntimeWarning: invalid value encountered in divide\n" + ] + }, + { + "name": "stdout", + "output_type": "stream", + "text": [ + "BST-po Iigp1 Glut BST-po Iigp1 Glut\n", + "N_contact_pairs = 52\n", + "N_noncontact_cell_pairs = 1\n", + "Endo NN PAS-MV Ebf2 Gly-Gaba\n", + "N_contact_pairs = 70\n", + "N_noncontact_cell_pairs = 70\n", + "N_contact_pairs = 70\n", + "N_noncontact_cell_pairs = 70\n", + "Oligo NN TRS-BAC Sln Glut\n", + "N_contact_pairs = 242\n", + "N_noncontact_cell_pairs = 242\n" + ] + }, + { + "name": "stderr", + "output_type": "stream", + "text": [ + ":89: RuntimeWarning: divide by zero encountered in divide\n", + ":89: RuntimeWarning: invalid value encountered in divide\n", + ":89: RuntimeWarning: divide by zero encountered in divide\n", + ":89: RuntimeWarning: invalid value encountered in divide\n", + ":89: RuntimeWarning: divide by zero encountered in divide\n", + ":89: RuntimeWarning: invalid value encountered in divide\n", + ":89: RuntimeWarning: divide by zero encountered in divide\n", + ":89: RuntimeWarning: invalid value encountered in divide\n", + ":89: RuntimeWarning: divide by zero encountered in divide\n", + ":89: RuntimeWarning: invalid value encountered in divide\n" + ] + }, + { + "name": "stdout", + "output_type": "stream", + "text": [ + "N_contact_pairs = 242\n", + "N_noncontact_cell_pairs = 242\n", + "ABC NN Endo NN\n", + "N_contact_pairs = 172\n", + "N_noncontact_cell_pairs = 172\n", + "N_contact_pairs = 172\n", + "N_noncontact_cell_pairs = 172\n", + "BAM NN Peri NN\n", + "N_contact_pairs = 60\n", + "N_noncontact_cell_pairs = 60\n" + ] + }, + { + "name": "stderr", + "output_type": "stream", + "text": [ + ":89: RuntimeWarning: divide by zero encountered in divide\n", + ":89: RuntimeWarning: invalid value encountered in divide\n", + ":89: RuntimeWarning: divide by zero encountered in divide\n", + ":89: RuntimeWarning: invalid value encountered in divide\n", + ":89: RuntimeWarning: divide by zero encountered in divide\n", + ":89: RuntimeWarning: invalid value encountered in divide\n", + ":89: RuntimeWarning: divide by zero encountered in divide\n", + ":89: RuntimeWarning: invalid value encountered in divide\n", + ":89: RuntimeWarning: divide by zero encountered in divide\n", + ":89: RuntimeWarning: invalid value encountered in divide\n", + ":89: RuntimeWarning: divide by zero encountered in divide\n", + ":89: RuntimeWarning: invalid value encountered in divide\n", + ":89: RuntimeWarning: divide by zero encountered in divide\n", + ":89: RuntimeWarning: invalid value encountered in divide\n" + ] + }, + { + "name": "stdout", + "output_type": "stream", + "text": [ + "N_contact_pairs = 60\n", + "N_noncontact_cell_pairs = 60\n", + "NTS Dbh Glut NTS-PARN Neurod2 Gly-Gaba\n", + "N_contact_pairs = 168\n", + "N_noncontact_cell_pairs = 168\n", + "N_contact_pairs = 168\n", + "N_noncontact_cell_pairs = 168\n", + "DCO Il22 Gly-Gaba Endo NN\n", + "N_contact_pairs = 92\n", + "N_noncontact_cell_pairs = 92\n", + "N_contact_pairs = 92\n", + "N_noncontact_cell_pairs = 92\n", + "DCO Il22 Gly-Gaba DCO Il22 Gly-Gaba\n", + "N_contact_pairs = 41\n", + "N_noncontact_cell_pairs = 41\n", + "Oligo NN Peri NN\n" + ] + }, + { + "name": "stderr", + "output_type": "stream", + "text": [ + ":89: RuntimeWarning: divide by zero encountered in divide\n", + ":89: RuntimeWarning: invalid value encountered in divide\n", + ":89: RuntimeWarning: divide by zero encountered in divide\n", + ":89: RuntimeWarning: invalid value encountered in divide\n" + ] + }, + { + "name": "stdout", + "output_type": "stream", + "text": [ + "N_contact_pairs = 316\n", + "N_noncontact_cell_pairs = 316\n", + "N_contact_pairs = 316\n", + "N_noncontact_cell_pairs = 316\n", + "DCO Il22 Gly-Gaba Oligo NN\n", + "N_contact_pairs = 114\n", + "N_noncontact_cell_pairs = 114\n" + ] + }, + { + "name": "stderr", + "output_type": "stream", + "text": [ + ":89: RuntimeWarning: divide by zero encountered in divide\n", + ":89: RuntimeWarning: invalid value encountered in divide\n", + ":89: RuntimeWarning: divide by zero encountered in divide\n", + ":89: RuntimeWarning: invalid value encountered in divide\n", + ":89: RuntimeWarning: divide by zero encountered in divide\n", + ":89: RuntimeWarning: invalid value encountered in divide\n", + ":89: RuntimeWarning: divide by zero encountered in divide\n", + ":89: RuntimeWarning: invalid value encountered in divide\n" + ] + }, + { + "name": "stdout", + "output_type": "stream", + "text": [ + "N_contact_pairs = 114\n", + "N_noncontact_cell_pairs = 114\n", + "PVR Six3 Sox3 Gaba PVR Six3 Sox3 Gaba\n", + "N_contact_pairs = 29\n", + "N_noncontact_cell_pairs = 29\n", + "Astro-NT NN DCO Il22 Gly-Gaba\n", + "N_contact_pairs = 105\n", + "N_noncontact_cell_pairs = 105\n", + "N_contact_pairs = 105\n", + "N_noncontact_cell_pairs = 105\n", + "MH Tac2 Glut Microglia NN\n", + "N_contact_pairs = 155\n", + "N_noncontact_cell_pairs = 155\n", + "N_contact_pairs = 155\n", + "N_noncontact_cell_pairs = 155\n" + ] + }, + { + "name": "stderr", + "output_type": "stream", + "text": [ + ":89: RuntimeWarning: divide by zero encountered in divide\n", + ":89: RuntimeWarning: invalid value encountered in divide\n", + ":89: RuntimeWarning: divide by zero encountered in divide\n", + ":89: RuntimeWarning: invalid value encountered in divide\n", + ":89: RuntimeWarning: divide by zero encountered in divide\n", + ":89: RuntimeWarning: invalid value encountered in divide\n", + ":89: RuntimeWarning: divide by zero encountered in divide\n", + ":89: RuntimeWarning: invalid value encountered in divide\n", + ":89: RuntimeWarning: divide by zero encountered in divide\n", + ":89: RuntimeWarning: invalid value encountered in divide\n" + ] + }, + { + "name": "stdout", + "output_type": "stream", + "text": [ + "Microglia NN Peri NN\n", + "N_contact_pairs = 71\n", + "N_noncontact_cell_pairs = 71\n", + "N_contact_pairs = 71\n", + "N_noncontact_cell_pairs = 71\n", + "ABC NN Ependymal NN\n", + "N_contact_pairs = 78\n", + "N_noncontact_cell_pairs = 78\n" + ] + }, + { + "name": "stderr", + "output_type": "stream", + "text": [ + ":89: RuntimeWarning: divide by zero encountered in divide\n", + ":89: RuntimeWarning: invalid value encountered in divide\n", + ":89: RuntimeWarning: divide by zero encountered in divide\n", + ":89: RuntimeWarning: invalid value encountered in divide\n" + ] + }, + { + "name": "stdout", + "output_type": "stream", + "text": [ + "N_contact_pairs = 78\n", + "N_noncontact_cell_pairs = 78\n", + "Bergmann NN Endo NN\n", + "N_contact_pairs = 181\n", + "N_noncontact_cell_pairs = 181\n", + "N_contact_pairs = 181\n", + "N_noncontact_cell_pairs = 181\n", + "Microglia NN VLMC NN\n" + ] + }, + { + "name": "stderr", + "output_type": "stream", + "text": [ + ":89: RuntimeWarning: divide by zero encountered in divide\n", + ":89: RuntimeWarning: invalid value encountered in divide\n", + ":89: RuntimeWarning: divide by zero encountered in divide\n", + ":89: RuntimeWarning: invalid value encountered in divide\n", + ":89: RuntimeWarning: divide by zero encountered in divide\n", + ":89: RuntimeWarning: invalid value encountered in divide\n", + ":89: RuntimeWarning: divide by zero encountered in divide\n", + ":89: RuntimeWarning: invalid value encountered in divide\n" + ] + }, + { + "name": "stdout", + "output_type": "stream", + "text": [ + "N_contact_pairs = 188\n", + "N_noncontact_cell_pairs = 188\n", + "N_contact_pairs = 188\n", + "N_noncontact_cell_pairs = 188\n", + "Astro-NT NN TRS-BAC Sln Glut\n", + "N_contact_pairs = 68\n", + "N_noncontact_cell_pairs = 68\n", + "N_contact_pairs = 68\n", + "N_noncontact_cell_pairs = 68\n", + "DCO UBC Glut Endo NN\n", + "N_contact_pairs = 108\n", + "N_noncontact_cell_pairs = 108\n" + ] + }, + { + "name": "stderr", + "output_type": "stream", + "text": [ + ":89: RuntimeWarning: divide by zero encountered in divide\n", + ":89: RuntimeWarning: invalid value encountered in divide\n", + ":89: RuntimeWarning: divide by zero encountered in divide\n", + ":89: RuntimeWarning: invalid value encountered in divide\n", + ":89: RuntimeWarning: divide by zero encountered in divide\n", + ":89: RuntimeWarning: invalid value encountered in divide\n", + ":89: RuntimeWarning: divide by zero encountered in divide\n", + ":89: RuntimeWarning: invalid value encountered in divide\n", + ":89: RuntimeWarning: divide by zero encountered in divide\n", + ":89: RuntimeWarning: invalid value encountered in divide\n" + ] + }, + { + "name": "stdout", + "output_type": "stream", + "text": [ + "N_contact_pairs = 108\n", + "N_noncontact_cell_pairs = 108\n", + "OB-STR-CTX Inh IMN Peri NN\n", + "N_contact_pairs = 119\n", + "N_noncontact_cell_pairs = 119\n", + "N_contact_pairs = 119\n", + "N_noncontact_cell_pairs = 119\n", + "Ependymal NN Peri NN\n" + ] + }, + { + "name": "stderr", + "output_type": "stream", + "text": [ + ":89: RuntimeWarning: divide by zero encountered in divide\n", + ":89: RuntimeWarning: invalid value encountered in divide\n", + ":89: RuntimeWarning: divide by zero encountered in divide\n", + ":89: RuntimeWarning: invalid value encountered in divide\n" + ] + }, + { + "name": "stdout", + "output_type": "stream", + "text": [ + "N_contact_pairs = 510\n", + "N_noncontact_cell_pairs = 510\n", + "N_contact_pairs = 510\n", + "N_noncontact_cell_pairs = 510\n" + ] + }, + { + "name": "stderr", + "output_type": "stream", + "text": [ + ":89: RuntimeWarning: divide by zero encountered in divide\n", + ":89: RuntimeWarning: invalid value encountered in divide\n", + ":89: RuntimeWarning: divide by zero encountered in divide\n", + ":89: RuntimeWarning: invalid value encountered in divide\n" + ] + }, + { + "name": "stdout", + "output_type": "stream", + "text": [ + "Tanycyte NN VLMC NN\n", + "N_contact_pairs = 108\n", + "N_noncontact_cell_pairs = 108\n", + "N_contact_pairs = 108\n", + "N_noncontact_cell_pairs = 108\n", + "Astro-NT NN NTS Dbh Glut\n", + "N_contact_pairs = 66\n", + "N_noncontact_cell_pairs = 66\n", + "N_contact_pairs = 66\n", + "N_noncontact_cell_pairs = 66\n", + "Microglia NN Tanycyte NN\n" + ] + }, + { + "name": "stderr", + "output_type": "stream", + "text": [ + ":89: RuntimeWarning: divide by zero encountered in divide\n", + ":89: RuntimeWarning: invalid value encountered in divide\n", + ":89: RuntimeWarning: divide by zero encountered in divide\n", + ":89: RuntimeWarning: invalid value encountered in divide\n", + ":89: RuntimeWarning: divide by zero encountered in divide\n", + ":89: RuntimeWarning: invalid value encountered in divide\n", + ":89: RuntimeWarning: divide by zero encountered in divide\n", + ":89: RuntimeWarning: invalid value encountered in divide\n", + ":89: RuntimeWarning: divide by zero encountered in divide\n", + ":89: RuntimeWarning: invalid value encountered in divide\n" + ] + }, + { + "name": "stdout", + "output_type": "stream", + "text": [ + "N_contact_pairs = 90\n", + "N_noncontact_cell_pairs = 90\n", + "N_contact_pairs = 90\n", + "N_noncontact_cell_pairs = 90\n", + "OB-STR-CTX Inh IMN OPC NN\n", + "N_contact_pairs = 117\n", + "N_noncontact_cell_pairs = 117\n", + "N_contact_pairs = 117\n", + "N_noncontact_cell_pairs = 117\n", + "NTS-PARN Neurod2 Gly-Gaba NTS-PARN Neurod2 Gly-Gaba\n", + "N_contact_pairs = 156\n", + "N_noncontact_cell_pairs = 156\n", + "Microglia NN OPC NN\n" + ] + }, + { + "name": "stderr", + "output_type": "stream", + "text": [ + ":89: RuntimeWarning: divide by zero encountered in divide\n", + ":89: RuntimeWarning: invalid value encountered in divide\n", + ":89: RuntimeWarning: divide by zero encountered in divide\n", + ":89: RuntimeWarning: invalid value encountered in divide\n", + ":89: RuntimeWarning: divide by zero encountered in divide\n", + ":89: RuntimeWarning: invalid value encountered in divide\n", + ":89: RuntimeWarning: divide by zero encountered in divide\n", + ":89: RuntimeWarning: invalid value encountered in divide\n", + ":89: RuntimeWarning: divide by zero encountered in divide\n", + ":89: RuntimeWarning: invalid value encountered in divide\n" + ] + }, + { + "name": "stdout", + "output_type": "stream", + "text": [ + "N_contact_pairs = 94\n", + "N_noncontact_cell_pairs = 94\n", + "N_contact_pairs = 94\n", + "N_noncontact_cell_pairs = 94\n", + "Astro-NT NN DCO UBC Glut\n", + "N_contact_pairs = 137\n", + "N_noncontact_cell_pairs = 137\n", + "N_contact_pairs = 137\n", + "N_noncontact_cell_pairs = 137\n", + "Astroependymal NN VLMC NN\n", + "N_contact_pairs = 86\n", + "N_noncontact_cell_pairs = 86\n" + ] + }, + { + "name": "stderr", + "output_type": "stream", + "text": [ + ":89: RuntimeWarning: divide by zero encountered in divide\n", + ":89: RuntimeWarning: invalid value encountered in divide\n", + ":89: RuntimeWarning: divide by zero encountered in divide\n", + ":89: RuntimeWarning: invalid value encountered in divide\n", + ":89: RuntimeWarning: divide by zero encountered in divide\n", + ":89: RuntimeWarning: invalid value encountered in divide\n", + ":89: RuntimeWarning: divide by zero encountered in divide\n", + ":89: RuntimeWarning: invalid value encountered in divide\n", + ":89: RuntimeWarning: divide by zero encountered in divide\n", + ":89: RuntimeWarning: invalid value encountered in divide\n" + ] + }, + { + "name": "stdout", + "output_type": "stream", + "text": [ + "N_contact_pairs = 86\n", + "N_noncontact_cell_pairs = 86\n", + "Astroependymal NN Endo NN\n", + "N_contact_pairs = 123\n", + "N_noncontact_cell_pairs = 123\n", + "N_contact_pairs = 123\n", + "N_noncontact_cell_pairs = 123\n", + "DCO UBC Glut Oligo NN\n", + "N_contact_pairs = 136\n", + "N_noncontact_cell_pairs = 136\n" + ] + }, + { + "name": "stderr", + "output_type": "stream", + "text": [ + ":89: RuntimeWarning: divide by zero encountered in divide\n", + ":89: RuntimeWarning: invalid value encountered in divide\n", + ":89: RuntimeWarning: divide by zero encountered in divide\n", + ":89: RuntimeWarning: invalid value encountered in divide\n", + ":89: RuntimeWarning: divide by zero encountered in divide\n", + ":89: RuntimeWarning: invalid value encountered in divide\n" + ] + }, + { + "name": "stdout", + "output_type": "stream", + "text": [ + "N_contact_pairs = 136\n", + "N_noncontact_cell_pairs = 136\n", + "Astro-NT NN PVT-PT Ntrk1 Glut\n", + "N_contact_pairs = 186\n", + "N_noncontact_cell_pairs = 186\n", + "N_contact_pairs = 186\n", + "N_noncontact_cell_pairs = 186\n", + "LDT-PCG Vsx2 Lhx4 Glut LDT-PCG Vsx2 Lhx4 Glut\n", + "N_contact_pairs = 58\n", + "N_noncontact_cell_pairs = 58\n", + "Endo NN Tanycyte NN\n", + "N_contact_pairs = 103\n", + "N_noncontact_cell_pairs = 103\n" + ] + }, + { + "name": "stderr", + "output_type": "stream", + "text": [ + ":89: RuntimeWarning: divide by zero encountered in divide\n", + ":89: RuntimeWarning: invalid value encountered in divide\n", + ":89: RuntimeWarning: divide by zero encountered in divide\n", + ":89: RuntimeWarning: invalid value encountered in divide\n", + ":89: RuntimeWarning: divide by zero encountered in divide\n", + ":89: RuntimeWarning: invalid value encountered in divide\n", + ":89: RuntimeWarning: divide by zero encountered in divide\n", + ":89: RuntimeWarning: invalid value encountered in divide\n", + ":89: RuntimeWarning: divide by zero encountered in divide\n", + ":89: RuntimeWarning: invalid value encountered in divide\n" + ] + }, + { + "name": "stdout", + "output_type": "stream", + "text": [ + "N_contact_pairs = 103\n", + "N_noncontact_cell_pairs = 103\n", + "Endo NN VCO Mafa Meis2 Glut\n", + "N_contact_pairs = 112\n", + "N_noncontact_cell_pairs = 112\n", + "N_contact_pairs = 112\n", + "N_noncontact_cell_pairs = 112\n", + "Astroependymal NN NTS-PARN Neurod2 Gly-Gaba\n", + "N_contact_pairs = 222\n", + "N_noncontact_cell_pairs = 222\n", + "N_contact_pairs = 222\n", + "N_noncontact_cell_pairs = 222\n", + "Ependymal NN Oligo NN\n" + ] + }, + { + "name": "stderr", + "output_type": "stream", + "text": [ + ":89: RuntimeWarning: divide by zero encountered in divide\n", + ":89: RuntimeWarning: invalid value encountered in divide\n", + ":89: RuntimeWarning: divide by zero encountered in divide\n", + ":89: RuntimeWarning: invalid value encountered in divide\n", + ":89: RuntimeWarning: divide by zero encountered in divide\n", + ":89: RuntimeWarning: invalid value encountered in divide\n", + ":89: RuntimeWarning: divide by zero encountered in divide\n", + ":89: RuntimeWarning: invalid value encountered in divide\n", + ":89: RuntimeWarning: divide by zero encountered in divide\n", + ":89: RuntimeWarning: invalid value encountered in divide\n" + ] + }, + { + "name": "stdout", + "output_type": "stream", + "text": [ + "N_contact_pairs = 3409\n", + "N_noncontact_cell_pairs = 3409\n" + ] + }, + { + "name": "stderr", + "output_type": "stream", + "text": [ + ":89: RuntimeWarning: divide by zero encountered in divide\n", + ":89: RuntimeWarning: invalid value encountered in divide\n" + ] + }, + { + "name": "stdout", + "output_type": "stream", + "text": [ + "N_contact_pairs = 3409\n", + "N_noncontact_cell_pairs = 3409\n", + "MH Tac2 Glut Peri NN\n", + "N_contact_pairs = 97\n", + "N_noncontact_cell_pairs = 97\n", + "N_contact_pairs = 97\n", + "N_noncontact_cell_pairs = 97\n" + ] + }, + { + "name": "stderr", + "output_type": "stream", + "text": [ + ":89: RuntimeWarning: divide by zero encountered in divide\n", + ":89: RuntimeWarning: invalid value encountered in divide\n", + ":89: RuntimeWarning: divide by zero encountered in divide\n", + ":89: RuntimeWarning: invalid value encountered in divide\n", + ":89: RuntimeWarning: divide by zero encountered in divide\n", + ":89: RuntimeWarning: invalid value encountered in divide\n" + ] + }, + { + "name": "stdout", + "output_type": "stream", + "text": [ + "CHOR NN SMC NN\n", + "N_contact_pairs = 278\n", + "N_noncontact_cell_pairs = 278\n" + ] + }, + { + "name": "stderr", + "output_type": "stream", + "text": [ + ":89: RuntimeWarning: divide by zero encountered in divide\n", + ":89: RuntimeWarning: invalid value encountered in divide\n", + ":89: RuntimeWarning: divide by zero encountered in divide\n", + ":89: RuntimeWarning: invalid value encountered in divide\n" + ] + }, + { + "name": "stdout", + "output_type": "stream", + "text": [ + "N_contact_pairs = 278\n", + "N_noncontact_cell_pairs = 278\n", + "Astro-NT NN Tanycyte NN\n", + "N_contact_pairs = 71\n", + "N_noncontact_cell_pairs = 71\n", + "N_contact_pairs = 71\n", + "N_noncontact_cell_pairs = 71\n", + "CHOR NN Microglia NN\n" + ] + }, + { + "name": "stderr", + "output_type": "stream", + "text": [ + ":89: RuntimeWarning: divide by zero encountered in divide\n", + ":89: RuntimeWarning: invalid value encountered in divide\n", + ":89: RuntimeWarning: divide by zero encountered in divide\n", + ":89: RuntimeWarning: invalid value encountered in divide\n" + ] + }, + { + "name": "stdout", + "output_type": "stream", + "text": [ + "N_contact_pairs = 652\n", + "N_noncontact_cell_pairs = 652\n", + "N_contact_pairs = 652\n", + "N_noncontact_cell_pairs = 652\n" + ] + }, + { + "name": "stderr", + "output_type": "stream", + "text": [ + ":89: RuntimeWarning: divide by zero encountered in divide\n", + ":89: RuntimeWarning: invalid value encountered in divide\n", + ":89: RuntimeWarning: divide by zero encountered in divide\n", + ":89: RuntimeWarning: invalid value encountered in divide\n" + ] + }, + { + "name": "stdout", + "output_type": "stream", + "text": [ + "Astro-NT NN VLMC NN\n", + "N_contact_pairs = 346\n", + "N_noncontact_cell_pairs = 346\n", + "N_contact_pairs = 346\n", + "N_noncontact_cell_pairs = 346\n", + "Endo NN Pineal Crx Glut\n" + ] + }, + { + "name": "stderr", + "output_type": "stream", + "text": [ + ":89: RuntimeWarning: divide by zero encountered in divide\n", + ":89: RuntimeWarning: invalid value encountered in divide\n", + ":89: RuntimeWarning: divide by zero encountered in divide\n", + ":89: RuntimeWarning: invalid value encountered in divide\n", + ":89: RuntimeWarning: divide by zero encountered in divide\n", + ":89: RuntimeWarning: invalid value encountered in divide\n", + ":89: RuntimeWarning: divide by zero encountered in divide\n", + ":89: RuntimeWarning: invalid value encountered in divide\n" + ] + }, + { + "name": "stdout", + "output_type": "stream", + "text": [ + "N_contact_pairs = 55\n", + "N_noncontact_cell_pairs = 55\n", + "N_contact_pairs = 55\n", + "N_noncontact_cell_pairs = 55\n", + "Oligo NN VCO Mafa Meis2 Glut\n", + "N_contact_pairs = 158\n", + "N_noncontact_cell_pairs = 158\n", + "N_contact_pairs = 158\n", + "N_noncontact_cell_pairs = 158\n" + ] + }, + { + "name": "stderr", + "output_type": "stream", + "text": [ + ":89: RuntimeWarning: divide by zero encountered in divide\n", + ":89: RuntimeWarning: invalid value encountered in divide\n", + ":89: RuntimeWarning: divide by zero encountered in divide\n", + ":89: RuntimeWarning: invalid value encountered in divide\n" + ] + }, + { + "name": "stdout", + "output_type": "stream", + "text": [ + "anterior_HY\n" + ] + }, + { + "name": "stderr", + "output_type": "stream", + "text": [ + ":25: ImplicitModificationWarning: Trying to modify attribute `.obs` of view, initializing view as actual.\n", + ":28: ImplicitModificationWarning: Trying to modify attribute `.obs` of view, initializing view as actual.\n" + ] + }, + { + "name": "stdout", + "output_type": "stream", + "text": [ + "Ependymal NN Ependymal NN\n", + "N_contact_pairs = 3706\n", + "N_noncontact_cell_pairs = 1378\n", + "SMC NN SMC NN\n", + "N_contact_pairs = 276\n", + "N_noncontact_cell_pairs = 276\n", + "SCH Six6 Cdc14a Gaba SCH Six6 Cdc14a Gaba\n", + "N_contact_pairs = 14567\n", + "N_noncontact_cell_pairs = 2415\n" + ] + }, + { + "name": "stderr", + "output_type": "stream", + "text": [ + ":89: RuntimeWarning: divide by zero encountered in divide\n", + ":89: RuntimeWarning: invalid value encountered in divide\n", + ":89: RuntimeWarning: divide by zero encountered in divide\n", + ":89: RuntimeWarning: invalid value encountered in divide\n", + ":89: RuntimeWarning: divide by zero encountered in divide\n", + ":89: RuntimeWarning: invalid value encountered in divide\n", + ":89: RuntimeWarning: divide by zero encountered in divide\n", + ":89: RuntimeWarning: invalid value encountered in divide\n", + ":89: RuntimeWarning: divide by zero encountered in divide\n", + ":89: RuntimeWarning: invalid value encountered in divide\n", + ":89: RuntimeWarning: divide by zero encountered in divide\n", + ":89: RuntimeWarning: invalid value encountered in divide\n" + ] + }, + { + "name": "stdout", + "output_type": "stream", + "text": [ + "SMC NN VLMC NN\n", + "N_contact_pairs = 232\n", + "N_noncontact_cell_pairs = 232\n", + "N_contact_pairs = 232\n", + "N_noncontact_cell_pairs = 232\n", + "Tanycyte NN Tanycyte NN\n", + "N_contact_pairs = 1202\n", + "N_noncontact_cell_pairs = 903\n", + "Endo NN VLMC NN\n", + "N_contact_pairs = 535\n", + "N_noncontact_cell_pairs = 535\n", + "N_contact_pairs = 535\n", + "N_noncontact_cell_pairs = 535\n" + ] + }, + { + "name": "stderr", + "output_type": "stream", + "text": [ + ":89: RuntimeWarning: divide by zero encountered in divide\n", + ":89: RuntimeWarning: invalid value encountered in divide\n", + ":89: RuntimeWarning: divide by zero encountered in divide\n", + ":89: RuntimeWarning: invalid value encountered in divide\n" + ] + }, + { + "name": "stdout", + "output_type": "stream", + "text": [ + "Endo NN Endo NN\n", + "N_contact_pairs = 3067\n", + "N_noncontact_cell_pairs = 3067\n", + "Endo NN SMC NN\n" + ] + }, + { + "name": "stderr", + "output_type": "stream", + "text": [ + ":89: RuntimeWarning: divide by zero encountered in divide\n", + ":89: RuntimeWarning: invalid value encountered in divide\n", + ":89: RuntimeWarning: divide by zero encountered in divide\n", + ":89: RuntimeWarning: invalid value encountered in divide\n", + ":89: RuntimeWarning: divide by zero encountered in divide\n", + ":89: RuntimeWarning: invalid value encountered in divide\n" + ] + }, + { + "name": "stdout", + "output_type": "stream", + "text": [ + "N_contact_pairs = 565\n", + "N_noncontact_cell_pairs = 565\n", + "N_contact_pairs = 565\n", + "N_noncontact_cell_pairs = 565\n", + "PVH-SO-PVa Otp Glut PVH-SO-PVa Otp Glut\n", + "N_contact_pairs = 3433\n", + "N_noncontact_cell_pairs = 3433\n" + ] + }, + { + "name": "stderr", + "output_type": "stream", + "text": [ + ":89: RuntimeWarning: divide by zero encountered in divide\n", + ":89: RuntimeWarning: invalid value encountered in divide\n", + ":89: RuntimeWarning: divide by zero encountered in divide\n", + ":89: RuntimeWarning: invalid value encountered in divide\n", + ":89: RuntimeWarning: divide by zero encountered in divide\n", + ":89: RuntimeWarning: invalid value encountered in divide\n" + ] + }, + { + "name": "stdout", + "output_type": "stream", + "text": [ + "Endo NN Peri NN\n", + "N_contact_pairs = 1116\n", + "N_noncontact_cell_pairs = 1116\n", + "N_contact_pairs = 1116\n", + "N_noncontact_cell_pairs = 1116\n", + "Oligo NN Oligo NN\n", + "N_contact_pairs = 8440\n", + "N_noncontact_cell_pairs = 8440\n" + ] + }, + { + "name": "stderr", + "output_type": "stream", + "text": [ + ":89: RuntimeWarning: divide by zero encountered in divide\n", + ":89: RuntimeWarning: invalid value encountered in divide\n", + ":89: RuntimeWarning: divide by zero encountered in divide\n", + ":89: RuntimeWarning: invalid value encountered in divide\n", + ":89: RuntimeWarning: divide by zero encountered in divide\n", + ":89: RuntimeWarning: invalid value encountered in divide\n", + ":89: RuntimeWarning: divide by zero encountered in divide\n", + ":89: RuntimeWarning: invalid value encountered in divide\n", + ":89: RuntimeWarning: divide by zero encountered in divide\n", + ":89: RuntimeWarning: invalid value encountered in divide\n", + ":89: RuntimeWarning: divide by zero encountered in divide\n", + ":89: RuntimeWarning: invalid value encountered in divide\n" + ] + }, + { + "name": "stdout", + "output_type": "stream", + "text": [ + "VLMC NN VLMC NN\n", + "N_contact_pairs = 74\n", + "N_noncontact_cell_pairs = 74\n", + "BAM NN VLMC NN\n", + "N_contact_pairs = 51\n", + "N_noncontact_cell_pairs = 51\n", + "N_contact_pairs = 51\n", + "N_noncontact_cell_pairs = 51\n", + "Ependymal NN Tanycyte NN\n", + "N_contact_pairs = 249\n", + "N_noncontact_cell_pairs = 249\n", + "N_contact_pairs = 249\n", + "N_noncontact_cell_pairs = 249\n", + "BAM NN Endo NN\n", + "N_contact_pairs = 176\n", + "N_noncontact_cell_pairs = 176\n", + "N_contact_pairs = 176\n", + "N_noncontact_cell_pairs = 176\n" + ] + }, + { + "name": "stderr", + "output_type": "stream", + "text": [ + ":89: RuntimeWarning: divide by zero encountered in divide\n", + ":89: RuntimeWarning: invalid value encountered in divide\n", + ":89: RuntimeWarning: divide by zero encountered in divide\n", + ":89: RuntimeWarning: invalid value encountered in divide\n", + ":89: RuntimeWarning: divide by zero encountered in divide\n", + ":89: RuntimeWarning: invalid value encountered in divide\n" + ] + }, + { + "name": "stdout", + "output_type": "stream", + "text": [ + "TU-ARH Otp Six6 Gaba TU-ARH Otp Six6 Gaba\n", + "N_contact_pairs = 388\n", + "N_noncontact_cell_pairs = 388\n", + "Astro-NT NN Endo NN\n", + "N_contact_pairs = 7346\n", + "N_noncontact_cell_pairs = 7346\n" + ] + }, + { + "name": "stderr", + "output_type": "stream", + "text": [ + ":89: RuntimeWarning: divide by zero encountered in divide\n", + ":89: RuntimeWarning: invalid value encountered in divide\n" + ] + }, + { + "name": "stdout", + "output_type": "stream", + "text": [ + "N_contact_pairs = 7346\n", + "N_noncontact_cell_pairs = 7346\n" + ] + }, + { + "name": "stderr", + "output_type": "stream", + "text": [ + ":89: RuntimeWarning: divide by zero encountered in divide\n", + ":89: RuntimeWarning: invalid value encountered in divide\n" + ] + }, + { + "name": "stdout", + "output_type": "stream", + "text": [ + "Astro-NT NN Astro-NT NN\n", + "N_contact_pairs = 7229\n", + "N_noncontact_cell_pairs = 7229\n" + ] + }, + { + "name": "stderr", + "output_type": "stream", + "text": [ + ":89: RuntimeWarning: divide by zero encountered in divide\n", + ":89: RuntimeWarning: invalid value encountered in divide\n", + ":89: RuntimeWarning: divide by zero encountered in divide\n", + ":89: RuntimeWarning: invalid value encountered in divide\n", + ":89: RuntimeWarning: divide by zero encountered in divide\n", + ":89: RuntimeWarning: invalid value encountered in divide\n" + ] + }, + { + "name": "stdout", + "output_type": "stream", + "text": [ + "Ependymal NN MEA-BST Sox6 Gaba\n", + "N_contact_pairs = 61\n", + "N_noncontact_cell_pairs = 61\n", + "N_contact_pairs = 61\n", + "N_noncontact_cell_pairs = 61\n", + "Endo NN PVH-SO-PVa Otp Glut\n", + "N_contact_pairs = 1750\n", + "N_noncontact_cell_pairs = 1750\n", + "N_contact_pairs = 1750\n", + "N_noncontact_cell_pairs = 1750\n" + ] + }, + { + "name": "stderr", + "output_type": "stream", + "text": [ + ":89: RuntimeWarning: divide by zero encountered in divide\n", + ":89: RuntimeWarning: invalid value encountered in divide\n", + ":89: RuntimeWarning: divide by zero encountered in divide\n", + ":89: RuntimeWarning: invalid value encountered in divide\n" + ] + }, + { + "name": "stdout", + "output_type": "stream", + "text": [ + "PVpo-VMPO-MPN Hmx2 Gaba PVpo-VMPO-MPN Hmx2 Gaba\n", + "N_contact_pairs = 2974\n", + "N_noncontact_cell_pairs = 2974\n", + "AVPV-MEPO-SFO Tbr1 Glut AVPV-MEPO-SFO Tbr1 Glut\n", + "N_contact_pairs = 2215\n", + "N_noncontact_cell_pairs = 2215\n", + "VMH Nr5a1 Glut VMH Nr5a1 Glut\n" + ] + }, + { + "name": "stderr", + "output_type": "stream", + "text": [ + ":89: RuntimeWarning: divide by zero encountered in divide\n", + ":89: RuntimeWarning: invalid value encountered in divide\n", + ":89: RuntimeWarning: divide by zero encountered in divide\n", + ":89: RuntimeWarning: invalid value encountered in divide\n", + ":89: RuntimeWarning: divide by zero encountered in divide\n", + ":89: RuntimeWarning: invalid value encountered in divide\n" + ] + }, + { + "name": "stdout", + "output_type": "stream", + "text": [ + "N_contact_pairs = 2222\n", + "N_noncontact_cell_pairs = 2222\n", + "AHN-RCH-LHA Otp Fezf1 Glut AHN-RCH-LHA Otp Fezf1 Glut\n", + "N_contact_pairs = 2071\n", + "N_noncontact_cell_pairs = 2071\n", + "PVR Six3 Sox3 Gaba PVR Six3 Sox3 Gaba\n", + "N_contact_pairs = 604\n", + "N_noncontact_cell_pairs = 604\n", + "MEA-BST Lhx6 Nfib Gaba MEA-BST Lhx6 Nfib Gaba\n", + "N_contact_pairs = 338\n", + "N_noncontact_cell_pairs = 338\n", + "LHA-AHN-PVH Otp Trh Glut LHA-AHN-PVH Otp Trh Glut\n" + ] + }, + { + "name": "stderr", + "output_type": "stream", + "text": [ + ":89: RuntimeWarning: divide by zero encountered in divide\n", + ":89: RuntimeWarning: invalid value encountered in divide\n", + ":89: RuntimeWarning: divide by zero encountered in divide\n", + ":89: RuntimeWarning: invalid value encountered in divide\n", + ":89: RuntimeWarning: divide by zero encountered in divide\n", + ":89: RuntimeWarning: invalid value encountered in divide\n", + ":89: RuntimeWarning: divide by zero encountered in divide\n", + ":89: RuntimeWarning: invalid value encountered in divide\n", + ":89: RuntimeWarning: divide by zero encountered in divide\n", + ":89: RuntimeWarning: invalid value encountered in divide\n" + ] + }, + { + "name": "stdout", + "output_type": "stream", + "text": [ + "N_contact_pairs = 393\n", + "N_noncontact_cell_pairs = 393\n", + "SBPV-PVa Six6 Satb2 Gaba SBPV-PVa Six6 Satb2 Gaba\n", + "N_contact_pairs = 188\n", + "N_noncontact_cell_pairs = 188\n", + "Astro-NT NN Peri NN\n", + "N_contact_pairs = 1259\n", + "N_noncontact_cell_pairs = 1259\n" + ] + }, + { + "name": "stderr", + "output_type": "stream", + "text": [ + ":89: RuntimeWarning: divide by zero encountered in divide\n", + ":89: RuntimeWarning: invalid value encountered in divide\n", + ":89: RuntimeWarning: divide by zero encountered in divide\n", + ":89: RuntimeWarning: invalid value encountered in divide\n", + ":89: RuntimeWarning: divide by zero encountered in divide\n", + ":89: RuntimeWarning: invalid value encountered in divide\n", + ":89: RuntimeWarning: divide by zero encountered in divide\n", + ":89: RuntimeWarning: invalid value encountered in divide\n" + ] + }, + { + "name": "stdout", + "output_type": "stream", + "text": [ + "N_contact_pairs = 1259\n", + "N_noncontact_cell_pairs = 1259\n", + "Peri NN Peri NN\n", + "N_contact_pairs = 98\n", + "N_noncontact_cell_pairs = 98\n", + "MPO-ADP Lhx8 Gaba MPO-ADP Lhx8 Gaba\n", + "N_contact_pairs = 791\n", + "N_noncontact_cell_pairs = 791\n", + "Microglia NN Oligo NN\n", + "N_contact_pairs = 2165\n", + "N_noncontact_cell_pairs = 2165\n" + ] + }, + { + "name": "stderr", + "output_type": "stream", + "text": [ + ":89: RuntimeWarning: divide by zero encountered in divide\n", + ":89: RuntimeWarning: invalid value encountered in divide\n", + ":89: RuntimeWarning: divide by zero encountered in divide\n", + ":89: RuntimeWarning: invalid value encountered in divide\n" + ] + }, + { + "name": "stdout", + "output_type": "stream", + "text": [ + "N_contact_pairs = 2165\n", + "N_noncontact_cell_pairs = 2165\n", + "NDB-SI-MA-STRv Lhx8 Gaba NDB-SI-MA-STRv Lhx8 Gaba\n", + "N_contact_pairs = 589\n", + "N_noncontact_cell_pairs = 589\n", + "Endo NN Microglia NN\n", + "N_contact_pairs = 1334\n", + "N_noncontact_cell_pairs = 1334\n" + ] + }, + { + "name": "stderr", + "output_type": "stream", + "text": [ + ":89: RuntimeWarning: divide by zero encountered in divide\n", + ":89: RuntimeWarning: invalid value encountered in divide\n", + ":89: RuntimeWarning: divide by zero encountered in divide\n", + ":89: RuntimeWarning: invalid value encountered in divide\n" + ] + }, + { + "name": "stdout", + "output_type": "stream", + "text": [ + "N_contact_pairs = 1334\n", + "N_noncontact_cell_pairs = 1334\n", + "SI-MA-LPO-LHA Skor1 Glut SI-MA-LPO-LHA Skor1 Glut\n", + "N_contact_pairs = 313\n", + "N_noncontact_cell_pairs = 313\n", + "Astro-NT NN SCH Six6 Cdc14a Gaba\n", + "N_contact_pairs = 2346\n", + "N_noncontact_cell_pairs = 2346\n" + ] + }, + { + "name": "stderr", + "output_type": "stream", + "text": [ + ":89: RuntimeWarning: divide by zero encountered in divide\n", + ":89: RuntimeWarning: invalid value encountered in divide\n", + ":89: RuntimeWarning: divide by zero encountered in divide\n", + ":89: RuntimeWarning: invalid value encountered in divide\n", + ":89: RuntimeWarning: divide by zero encountered in divide\n", + ":89: RuntimeWarning: invalid value encountered in divide\n" + ] + }, + { + "name": "stdout", + "output_type": "stream", + "text": [ + "N_contact_pairs = 2346\n", + "N_noncontact_cell_pairs = 2346\n", + "Peri NN VLMC NN\n", + "N_contact_pairs = 51\n", + "N_noncontact_cell_pairs = 51\n", + "N_contact_pairs = 51\n", + "N_noncontact_cell_pairs = 51\n", + "MPN-MPO-PVpo Hmx2 Glut MPN-MPO-PVpo Hmx2 Glut\n", + "N_contact_pairs = 568\n", + "N_noncontact_cell_pairs = 568\n", + "AHN Onecut3 Gaba AHN Onecut3 Gaba\n", + "N_contact_pairs = 514\n", + "N_noncontact_cell_pairs = 514\n" + ] + }, + { + "name": "stderr", + "output_type": "stream", + "text": [ + ":89: RuntimeWarning: divide by zero encountered in divide\n", + ":89: RuntimeWarning: invalid value encountered in divide\n", + ":89: RuntimeWarning: divide by zero encountered in divide\n", + ":89: RuntimeWarning: invalid value encountered in divide\n", + ":89: RuntimeWarning: divide by zero encountered in divide\n", + ":89: RuntimeWarning: invalid value encountered in divide\n", + ":89: RuntimeWarning: divide by zero encountered in divide\n", + ":89: RuntimeWarning: invalid value encountered in divide\n", + ":89: RuntimeWarning: divide by zero encountered in divide\n", + ":89: RuntimeWarning: invalid value encountered in divide\n", + ":89: RuntimeWarning: divide by zero encountered in divide\n", + ":89: RuntimeWarning: invalid value encountered in divide\n" + ] + }, + { + "name": "stdout", + "output_type": "stream", + "text": [ + "AHN-SBPV-PVHd Pdrm12 Gaba AHN-SBPV-PVHd Pdrm12 Gaba\n", + "N_contact_pairs = 951\n", + "N_noncontact_cell_pairs = 951\n", + "AVPV-MEPO-SFO Tbr1 Glut PVR Six3 Sox3 Gaba\n", + "N_contact_pairs = 1403\n", + "N_noncontact_cell_pairs = 1403\n", + "N_contact_pairs = 1403\n", + "N_noncontact_cell_pairs = 1403\n", + "BST-MPN Six3 Nrgn Gaba BST-MPN Six3 Nrgn Gaba\n", + "N_contact_pairs = 859\n", + "N_noncontact_cell_pairs = 859\n", + "Microglia NN Peri NN\n" + ] + }, + { + "name": "stderr", + "output_type": "stream", + "text": [ + ":89: RuntimeWarning: divide by zero encountered in divide\n", + ":89: RuntimeWarning: invalid value encountered in divide\n", + ":89: RuntimeWarning: divide by zero encountered in divide\n", + ":89: RuntimeWarning: invalid value encountered in divide\n", + ":89: RuntimeWarning: divide by zero encountered in divide\n", + ":89: RuntimeWarning: invalid value encountered in divide\n", + ":89: RuntimeWarning: divide by zero encountered in divide\n", + ":89: RuntimeWarning: invalid value encountered in divide\n", + ":89: RuntimeWarning: divide by zero encountered in divide\n", + ":89: RuntimeWarning: invalid value encountered in divide\n" + ] + }, + { + "name": "stdout", + "output_type": "stream", + "text": [ + "N_contact_pairs = 247\n", + "N_noncontact_cell_pairs = 247\n", + "N_contact_pairs = 247\n", + "N_noncontact_cell_pairs = 247\n", + "ADP-MPO Trp73 Glut ADP-MPO Trp73 Glut\n", + "N_contact_pairs = 153\n", + "N_noncontact_cell_pairs = 153\n", + "NDB-SI-MA-STRv Lhx8 Gaba Oligo NN\n", + "N_contact_pairs = 1248\n", + "N_noncontact_cell_pairs = 1248\n" + ] + }, + { + "name": "stderr", + "output_type": "stream", + "text": [ + ":89: RuntimeWarning: divide by zero encountered in divide\n", + ":89: RuntimeWarning: invalid value encountered in divide\n", + ":89: RuntimeWarning: divide by zero encountered in divide\n", + ":89: RuntimeWarning: invalid value encountered in divide\n" + ] + }, + { + "name": "stdout", + "output_type": "stream", + "text": [ + "N_contact_pairs = 1248\n", + "N_noncontact_cell_pairs = 1248\n", + "LHA Barhl2 Glut LHA Barhl2 Glut\n", + "N_contact_pairs = 176\n", + "N_noncontact_cell_pairs = 176\n", + "Astro-NT NN SMC NN\n", + "N_contact_pairs = 437\n", + "N_noncontact_cell_pairs = 437\n" + ] + }, + { + "name": "stderr", + "output_type": "stream", + "text": [ + ":89: RuntimeWarning: divide by zero encountered in divide\n", + ":89: RuntimeWarning: invalid value encountered in divide\n", + ":89: RuntimeWarning: divide by zero encountered in divide\n", + ":89: RuntimeWarning: invalid value encountered in divide\n", + ":89: RuntimeWarning: divide by zero encountered in divide\n", + ":89: RuntimeWarning: invalid value encountered in divide\n" + ] + }, + { + "name": "stdout", + "output_type": "stream", + "text": [ + "N_contact_pairs = 437\n", + "N_noncontact_cell_pairs = 437\n", + "Ependymal NN Microglia NN\n", + "N_contact_pairs = 178\n", + "N_noncontact_cell_pairs = 178\n", + "N_contact_pairs = 178\n", + "N_noncontact_cell_pairs = 178\n", + "Astro-NT NN PVR Six3 Sox3 Gaba\n", + "N_contact_pairs = 1483\n", + "N_noncontact_cell_pairs = 1483\n" + ] + }, + { + "name": "stderr", + "output_type": "stream", + "text": [ + ":89: RuntimeWarning: divide by zero encountered in divide\n", + ":89: RuntimeWarning: invalid value encountered in divide\n", + ":89: RuntimeWarning: divide by zero encountered in divide\n", + ":89: RuntimeWarning: invalid value encountered in divide\n", + ":89: RuntimeWarning: divide by zero encountered in divide\n", + ":89: RuntimeWarning: invalid value encountered in divide\n", + ":89: RuntimeWarning: divide by zero encountered in divide\n", + ":89: RuntimeWarning: invalid value encountered in divide\n", + ":89: RuntimeWarning: divide by zero encountered in divide\n", + ":89: RuntimeWarning: invalid value encountered in divide\n" + ] + }, + { + "name": "stdout", + "output_type": "stream", + "text": [ + "N_contact_pairs = 1483\n", + "N_noncontact_cell_pairs = 1483\n", + "Astro-NT NN SBPV-PVa Six6 Satb2 Gaba\n", + "N_contact_pairs = 556\n", + "N_noncontact_cell_pairs = 556\n", + "N_contact_pairs = 556\n", + "N_noncontact_cell_pairs = 556\n", + "SI-MPO-LPO Lhx8 Gaba SI-MPO-LPO Lhx8 Gaba\n", + "N_contact_pairs = 448\n", + "N_noncontact_cell_pairs = 448\n", + "SCH Six6 Cdc14a Gaba SMC NN\n", + "N_contact_pairs = 70\n", + "N_noncontact_cell_pairs = 70\n" + ] + }, + { + "name": "stderr", + "output_type": "stream", + "text": [ + ":89: RuntimeWarning: divide by zero encountered in divide\n", + ":89: RuntimeWarning: invalid value encountered in divide\n", + ":89: RuntimeWarning: divide by zero encountered in divide\n", + ":89: RuntimeWarning: invalid value encountered in divide\n", + ":89: RuntimeWarning: divide by zero encountered in divide\n", + ":89: RuntimeWarning: invalid value encountered in divide\n", + ":89: RuntimeWarning: divide by zero encountered in divide\n", + ":89: RuntimeWarning: invalid value encountered in divide\n", + ":89: RuntimeWarning: divide by zero encountered in divide\n", + ":89: RuntimeWarning: invalid value encountered in divide\n" + ] + }, + { + "name": "stdout", + "output_type": "stream", + "text": [ + "N_contact_pairs = 70\n", + "N_noncontact_cell_pairs = 70\n", + "Astro-NT NN Microglia NN\n", + "N_contact_pairs = 2240\n", + "N_noncontact_cell_pairs = 2240\n" + ] + }, + { + "name": "stderr", + "output_type": "stream", + "text": [ + ":89: RuntimeWarning: divide by zero encountered in divide\n", + ":89: RuntimeWarning: invalid value encountered in divide\n", + ":89: RuntimeWarning: divide by zero encountered in divide\n", + ":89: RuntimeWarning: invalid value encountered in divide\n" + ] + }, + { + "name": "stdout", + "output_type": "stream", + "text": [ + "N_contact_pairs = 2240\n", + "N_noncontact_cell_pairs = 2240\n", + "OPC NN OPC NN\n", + "N_contact_pairs = 325\n", + "N_noncontact_cell_pairs = 325\n", + "Astro-NT NN PVH-SO-PVa Otp Glut\n" + ] + }, + { + "name": "stderr", + "output_type": "stream", + "text": [ + ":89: RuntimeWarning: divide by zero encountered in divide\n", + ":89: RuntimeWarning: invalid value encountered in divide\n", + ":89: RuntimeWarning: divide by zero encountered in divide\n", + ":89: RuntimeWarning: invalid value encountered in divide\n" + ] + }, + { + "name": "stdout", + "output_type": "stream", + "text": [ + "N_contact_pairs = 2010\n", + "N_noncontact_cell_pairs = 2010\n", + "N_contact_pairs = 2010\n", + "N_noncontact_cell_pairs = 2010\n" + ] + }, + { + "name": "stderr", + "output_type": "stream", + "text": [ + ":89: RuntimeWarning: divide by zero encountered in divide\n", + ":89: RuntimeWarning: invalid value encountered in divide\n", + ":89: RuntimeWarning: divide by zero encountered in divide\n", + ":89: RuntimeWarning: invalid value encountered in divide\n" + ] + }, + { + "name": "stdout", + "output_type": "stream", + "text": [ + "BST Tac2 Gaba BST Tac2 Gaba\n", + "N_contact_pairs = 81\n", + "N_noncontact_cell_pairs = 81\n", + "Astro-NT NN Oligo NN\n", + "N_contact_pairs = 8886\n", + "N_noncontact_cell_pairs = 8886\n" + ] + }, + { + "name": "stderr", + "output_type": "stream", + "text": [ + ":89: RuntimeWarning: divide by zero encountered in divide\n", + ":89: RuntimeWarning: invalid value encountered in divide\n" + ] + }, + { + "name": "stdout", + "output_type": "stream", + "text": [ + "N_contact_pairs = 8886\n", + "N_noncontact_cell_pairs = 8886\n" + ] + }, + { + "name": "stderr", + "output_type": "stream", + "text": [ + ":89: RuntimeWarning: divide by zero encountered in divide\n", + ":89: RuntimeWarning: invalid value encountered in divide\n" + ] + }, + { + "name": "stdout", + "output_type": "stream", + "text": [ + "Astro-NT NN OPC NN\n", + "N_contact_pairs = 2634\n", + "N_noncontact_cell_pairs = 2634\n" + ] + }, + { + "name": "stderr", + "output_type": "stream", + "text": [ + ":89: RuntimeWarning: divide by zero encountered in divide\n", + ":89: RuntimeWarning: invalid value encountered in divide\n", + ":89: RuntimeWarning: divide by zero encountered in divide\n", + ":89: RuntimeWarning: invalid value encountered in divide\n" + ] + }, + { + "name": "stdout", + "output_type": "stream", + "text": [ + "N_contact_pairs = 2634\n", + "N_noncontact_cell_pairs = 2634\n", + "PVR Six3 Sox3 Gaba Tanycyte NN\n", + "N_contact_pairs = 133\n", + "N_noncontact_cell_pairs = 133\n", + "N_contact_pairs = 133\n", + "N_noncontact_cell_pairs = 133\n", + "Astro-NT NN SI-MPO-LPO Lhx8 Gaba\n" + ] + }, + { + "name": "stderr", + "output_type": "stream", + "text": [ + ":89: RuntimeWarning: divide by zero encountered in divide\n", + ":89: RuntimeWarning: invalid value encountered in divide\n", + ":89: RuntimeWarning: divide by zero encountered in divide\n", + ":89: RuntimeWarning: invalid value encountered in divide\n", + ":89: RuntimeWarning: divide by zero encountered in divide\n", + ":89: RuntimeWarning: invalid value encountered in divide\n" + ] + }, + { + "name": "stdout", + "output_type": "stream", + "text": [ + "N_contact_pairs = 1412\n", + "N_noncontact_cell_pairs = 1412\n", + "N_contact_pairs = 1412\n", + "N_noncontact_cell_pairs = 1412\n", + "MEA-BST Sox6 Gaba MEA-BST Sox6 Gaba\n" + ] + }, + { + "name": "stderr", + "output_type": "stream", + "text": [ + ":89: RuntimeWarning: divide by zero encountered in divide\n", + ":89: RuntimeWarning: invalid value encountered in divide\n", + ":89: RuntimeWarning: divide by zero encountered in divide\n", + ":89: RuntimeWarning: invalid value encountered in divide\n", + ":89: RuntimeWarning: divide by zero encountered in divide\n", + ":89: RuntimeWarning: invalid value encountered in divide\n", + ":89: RuntimeWarning: divide by zero encountered in divide\n", + ":89: RuntimeWarning: invalid value encountered in divide\n" + ] + }, + { + "name": "stdout", + "output_type": "stream", + "text": [ + "N_contact_pairs = 86\n", + "N_noncontact_cell_pairs = 86\n", + "Endo NN SCH Six6 Cdc14a Gaba\n", + "N_contact_pairs = 726\n", + "N_noncontact_cell_pairs = 726\n", + "N_contact_pairs = 726\n", + "N_noncontact_cell_pairs = 726\n", + "LHA-AHN-PVH Otp Trh Glut PVH-SO-PVa Otp Glut\n", + "N_contact_pairs = 444\n", + "N_noncontact_cell_pairs = 444\n" + ] + }, + { + "name": "stderr", + "output_type": "stream", + "text": [ + ":89: RuntimeWarning: divide by zero encountered in divide\n", + ":89: RuntimeWarning: invalid value encountered in divide\n", + ":89: RuntimeWarning: divide by zero encountered in divide\n", + ":89: RuntimeWarning: invalid value encountered in divide\n" + ] + }, + { + "name": "stdout", + "output_type": "stream", + "text": [ + "N_contact_pairs = 444\n", + "N_noncontact_cell_pairs = 444\n", + "Endo NN Oligo NN\n", + "N_contact_pairs = 5479\n", + "N_noncontact_cell_pairs = 5479\n" + ] + }, + { + "name": "stderr", + "output_type": "stream", + "text": [ + ":89: RuntimeWarning: divide by zero encountered in divide\n", + ":89: RuntimeWarning: invalid value encountered in divide\n" + ] + }, + { + "name": "stdout", + "output_type": "stream", + "text": [ + "N_contact_pairs = 5479\n", + "N_noncontact_cell_pairs = 5479\n" + ] + }, + { + "name": "stderr", + "output_type": "stream", + "text": [ + ":89: RuntimeWarning: divide by zero encountered in divide\n", + ":89: RuntimeWarning: invalid value encountered in divide\n", + ":89: RuntimeWarning: divide by zero encountered in divide\n", + ":89: RuntimeWarning: invalid value encountered in divide\n" + ] + }, + { + "name": "stdout", + "output_type": "stream", + "text": [ + "AVPV-MEPO-SFO Tbr1 Glut Astro-NT NN\n", + "N_contact_pairs = 1612\n", + "N_noncontact_cell_pairs = 1612\n", + "N_contact_pairs = 1612\n", + "N_noncontact_cell_pairs = 1612\n" + ] + }, + { + "name": "stderr", + "output_type": "stream", + "text": [ + ":89: RuntimeWarning: divide by zero encountered in divide\n", + ":89: RuntimeWarning: invalid value encountered in divide\n", + ":89: RuntimeWarning: divide by zero encountered in divide\n", + ":89: RuntimeWarning: invalid value encountered in divide\n" + ] + }, + { + "name": "stdout", + "output_type": "stream", + "text": [ + "Astro-NT NN MPO-ADP Lhx8 Gaba\n", + "N_contact_pairs = 1426\n", + "N_noncontact_cell_pairs = 1426\n", + "N_contact_pairs = 1426\n", + "N_noncontact_cell_pairs = 1426\n" + ] + }, + { + "name": "stderr", + "output_type": "stream", + "text": [ + ":89: RuntimeWarning: divide by zero encountered in divide\n", + ":89: RuntimeWarning: invalid value encountered in divide\n", + ":89: RuntimeWarning: divide by zero encountered in divide\n", + ":89: RuntimeWarning: invalid value encountered in divide\n", + ":89: RuntimeWarning: divide by zero encountered in divide\n", + ":89: RuntimeWarning: invalid value encountered in divide\n", + ":89: RuntimeWarning: divide by zero encountered in divide\n", + ":89: RuntimeWarning: invalid value encountered in divide\n", + ":89: RuntimeWarning: divide by zero encountered in divide\n", + ":89: RuntimeWarning: invalid value encountered in divide\n", + ":89: RuntimeWarning: divide by zero encountered in divide\n", + ":89: RuntimeWarning: invalid value encountered in divide\n", + ":89: RuntimeWarning: divide by zero encountered in divide\n", + ":89: RuntimeWarning: invalid value encountered in divide\n" + ] + }, + { + "name": "stdout", + "output_type": "stream", + "text": [ + "OPC NN TU-ARH Otp Six6 Gaba\n", + "N_contact_pairs = 90\n", + "N_noncontact_cell_pairs = 90\n", + "N_contact_pairs = 90\n", + "N_noncontact_cell_pairs = 90\n", + "PVH-SO-PVa Otp Glut Peri NN\n", + "N_contact_pairs = 208\n", + "N_noncontact_cell_pairs = 208\n", + "N_contact_pairs = 208\n", + "N_noncontact_cell_pairs = 208\n", + "PVHd-SBPV Six3 Prox1 Gaba PVHd-SBPV Six3 Prox1 Gaba\n", + "N_contact_pairs = 124\n", + "N_noncontact_cell_pairs = 124\n", + "LHA-AHN-PVH Otp Trh Glut PVpo-VMPO-MPN Hmx2 Gaba\n", + "N_contact_pairs = 700\n", + "N_noncontact_cell_pairs = 700\n", + "N_contact_pairs = 700\n", + "N_noncontact_cell_pairs = 700\n", + "Microglia NN NDB-SI-MA-STRv Lhx8 Gaba\n", + "N_contact_pairs = 220\n", + "N_noncontact_cell_pairs = 220\n", + "N_contact_pairs = 220\n", + "N_noncontact_cell_pairs = 220\n", + "Oligo NN SI-MA-LPO-LHA Skor1 Glut\n", + "N_contact_pairs = 1254\n", + "N_noncontact_cell_pairs = 1254\n" + ] + }, + { + "name": "stderr", + "output_type": "stream", + "text": [ + ":89: RuntimeWarning: divide by zero encountered in divide\n", + ":89: RuntimeWarning: invalid value encountered in divide\n", + ":89: RuntimeWarning: divide by zero encountered in divide\n", + ":89: RuntimeWarning: invalid value encountered in divide\n", + ":89: RuntimeWarning: divide by zero encountered in divide\n", + ":89: RuntimeWarning: invalid value encountered in divide\n", + ":89: RuntimeWarning: divide by zero encountered in divide\n", + ":89: RuntimeWarning: invalid value encountered in divide\n" + ] + }, + { + "name": "stdout", + "output_type": "stream", + "text": [ + "N_contact_pairs = 1254\n", + "N_noncontact_cell_pairs = 1254\n", + "Endo NN NDB-SI-MA-STRv Lhx8 Gaba\n", + "N_contact_pairs = 662\n", + "N_noncontact_cell_pairs = 662\n", + "N_contact_pairs = 662\n", + "N_noncontact_cell_pairs = 662\n" + ] + }, + { + "name": "stderr", + "output_type": "stream", + "text": [ + ":89: RuntimeWarning: divide by zero encountered in divide\n", + ":89: RuntimeWarning: invalid value encountered in divide\n", + ":89: RuntimeWarning: divide by zero encountered in divide\n", + ":89: RuntimeWarning: invalid value encountered in divide\n", + ":89: RuntimeWarning: divide by zero encountered in divide\n", + ":89: RuntimeWarning: invalid value encountered in divide\n" + ] + }, + { + "name": "stdout", + "output_type": "stream", + "text": [ + "anterior_MB\n" + ] + }, + { + "name": "stderr", + "output_type": "stream", + "text": [ + ":25: ImplicitModificationWarning: Trying to modify attribute `.obs` of view, initializing view as actual.\n", + ":28: ImplicitModificationWarning: Trying to modify attribute `.obs` of view, initializing view as actual.\n" + ] + }, + { + "name": "stdout", + "output_type": "stream", + "text": [ + "Ependymal NN Ependymal NN\n", + "N_contact_pairs = 5674\n", + "N_noncontact_cell_pairs = 153\n", + "SMC NN SMC NN\n", + "N_contact_pairs = 2225\n", + "N_noncontact_cell_pairs = 2225\n", + "VLMC NN VLMC NN\n" + ] + }, + { + "name": "stderr", + "output_type": "stream", + "text": [ + ":89: RuntimeWarning: divide by zero encountered in divide\n", + ":89: RuntimeWarning: invalid value encountered in divide\n", + ":89: RuntimeWarning: divide by zero encountered in divide\n", + ":89: RuntimeWarning: invalid value encountered in divide\n", + ":89: RuntimeWarning: divide by zero encountered in divide\n", + ":89: RuntimeWarning: invalid value encountered in divide\n" + ] + }, + { + "name": "stdout", + "output_type": "stream", + "text": [ + "N_contact_pairs = 2664\n", + "N_noncontact_cell_pairs = 2664\n", + "Endo NN VLMC NN\n", + "N_contact_pairs = 4167\n", + "N_noncontact_cell_pairs = 4167\n" + ] + }, + { + "name": "stderr", + "output_type": "stream", + "text": [ + ":89: RuntimeWarning: divide by zero encountered in divide\n", + ":89: RuntimeWarning: invalid value encountered in divide\n" + ] + }, + { + "name": "stdout", + "output_type": "stream", + "text": [ + "N_contact_pairs = 4167\n", + "N_noncontact_cell_pairs = 4167\n", + "Endo NN SMC NN\n" + ] + }, + { + "name": "stderr", + "output_type": "stream", + "text": [ + ":89: RuntimeWarning: divide by zero encountered in divide\n", + ":89: RuntimeWarning: invalid value encountered in divide\n" + ] + }, + { + "name": "stdout", + "output_type": "stream", + "text": [ + "N_contact_pairs = 3370\n", + "N_noncontact_cell_pairs = 3370\n" + ] + }, + { + "name": "stderr", + "output_type": "stream", + "text": [ + ":89: RuntimeWarning: divide by zero encountered in divide\n", + ":89: RuntimeWarning: invalid value encountered in divide\n" + ] + }, + { + "name": "stdout", + "output_type": "stream", + "text": [ + "N_contact_pairs = 3370\n", + "N_noncontact_cell_pairs = 3370\n", + "SMC NN VLMC NN\n", + "N_contact_pairs = 2191\n", + "N_noncontact_cell_pairs = 2191\n" + ] + }, + { + "name": "stderr", + "output_type": "stream", + "text": [ + ":89: RuntimeWarning: divide by zero encountered in divide\n", + ":89: RuntimeWarning: invalid value encountered in divide\n", + ":89: RuntimeWarning: divide by zero encountered in divide\n", + ":89: RuntimeWarning: invalid value encountered in divide\n", + ":89: RuntimeWarning: divide by zero encountered in divide\n", + ":89: RuntimeWarning: invalid value encountered in divide\n" + ] + }, + { + "name": "stdout", + "output_type": "stream", + "text": [ + "N_contact_pairs = 2191\n", + "N_noncontact_cell_pairs = 2191\n", + "Hypendymal NN Hypendymal NN\n", + "N_contact_pairs = 1618\n", + "N_noncontact_cell_pairs = 3\n", + "BAM NN VLMC NN\n", + "N_contact_pairs = 828\n", + "N_noncontact_cell_pairs = 828\n", + "N_contact_pairs = 828\n", + "N_noncontact_cell_pairs = 828\n", + "Endo NN Endo NN\n" + ] + }, + { + "name": "stderr", + "output_type": "stream", + "text": [ + ":89: RuntimeWarning: divide by zero encountered in divide\n", + ":89: RuntimeWarning: invalid value encountered in divide\n", + ":89: RuntimeWarning: divide by zero encountered in divide\n", + ":89: RuntimeWarning: invalid value encountered in divide\n" + ] + }, + { + "name": "stdout", + "output_type": "stream", + "text": [ + "N_contact_pairs = 11121\n", + "N_noncontact_cell_pairs = 11121\n" + ] + }, + { + "name": "stderr", + "output_type": "stream", + "text": [ + ":89: RuntimeWarning: divide by zero encountered in divide\n", + ":89: RuntimeWarning: invalid value encountered in divide\n" + ] + }, + { + "name": "stdout", + "output_type": "stream", + "text": [ + "BAM NN Endo NN\n", + "N_contact_pairs = 952\n", + "N_noncontact_cell_pairs = 952\n" + ] + }, + { + "name": "stderr", + "output_type": "stream", + "text": [ + ":89: RuntimeWarning: divide by zero encountered in divide\n", + ":89: RuntimeWarning: invalid value encountered in divide\n", + ":89: RuntimeWarning: divide by zero encountered in divide\n", + ":89: RuntimeWarning: invalid value encountered in divide\n" + ] + }, + { + "name": "stdout", + "output_type": "stream", + "text": [ + "N_contact_pairs = 952\n", + "N_noncontact_cell_pairs = 952\n", + "Endo NN Peri NN\n", + "N_contact_pairs = 4072\n", + "N_noncontact_cell_pairs = 4072\n" + ] + }, + { + "name": "stderr", + "output_type": "stream", + "text": [ + ":89: RuntimeWarning: divide by zero encountered in divide\n", + ":89: RuntimeWarning: invalid value encountered in divide\n" + ] + }, + { + "name": "stdout", + "output_type": "stream", + "text": [ + "N_contact_pairs = 4072\n", + "N_noncontact_cell_pairs = 4072\n", + "BAM NN SMC NN\n", + "N_contact_pairs = 311\n", + "N_noncontact_cell_pairs = 311\n" + ] + }, + { + "name": "stderr", + "output_type": "stream", + "text": [ + ":89: RuntimeWarning: divide by zero encountered in divide\n", + ":89: RuntimeWarning: invalid value encountered in divide\n", + ":89: RuntimeWarning: divide by zero encountered in divide\n", + ":89: RuntimeWarning: invalid value encountered in divide\n", + ":89: RuntimeWarning: divide by zero encountered in divide\n", + ":89: RuntimeWarning: invalid value encountered in divide\n", + ":89: RuntimeWarning: divide by zero encountered in divide\n", + ":89: RuntimeWarning: invalid value encountered in divide\n", + ":89: RuntimeWarning: divide by zero encountered in divide\n", + ":89: RuntimeWarning: invalid value encountered in divide\n", + ":89: RuntimeWarning: divide by zero encountered in divide\n", + ":89: RuntimeWarning: invalid value encountered in divide\n", + ":89: RuntimeWarning: divide by zero encountered in divide\n", + ":89: RuntimeWarning: invalid value encountered in divide\n" + ] + }, + { + "name": "stdout", + "output_type": "stream", + "text": [ + "N_contact_pairs = 311\n", + "N_noncontact_cell_pairs = 311\n", + "DTN-LDT-IPN Otp Pax3 Gaba DTN-LDT-IPN Otp Pax3 Gaba\n", + "N_contact_pairs = 1354\n", + "N_noncontact_cell_pairs = 1354\n", + "IPN-LDT Vsx2 Nkx6-1 Glut IPN-LDT Vsx2 Nkx6-1 Glut\n", + "N_contact_pairs = 262\n", + "N_noncontact_cell_pairs = 262\n", + "Astroependymal NN Astroependymal NN\n", + "N_contact_pairs = 102\n", + "N_noncontact_cell_pairs = 102\n", + "BAM NN BAM NN\n", + "N_contact_pairs = 100\n", + "N_noncontact_cell_pairs = 100\n", + "SNc-VTA-RAmb Foxa1 Dopa SNc-VTA-RAmb Foxa1 Dopa\n", + "N_contact_pairs = 1588\n", + "N_noncontact_cell_pairs = 1588\n", + "SCig Tfap2b Chrnb3 Glut SCig Tfap2b Chrnb3 Glut\n", + "N_contact_pairs = 141\n", + "N_noncontact_cell_pairs = 141\n", + "Lymphoid NN Lymphoid NN\n", + "N_contact_pairs = 31\n", + "N_noncontact_cell_pairs = 31\n" + ] + }, + { + "name": "stderr", + "output_type": "stream", + "text": [ + ":89: RuntimeWarning: divide by zero encountered in divide\n", + ":89: RuntimeWarning: invalid value encountered in divide\n", + ":89: RuntimeWarning: divide by zero encountered in divide\n", + ":89: RuntimeWarning: invalid value encountered in divide\n", + ":89: RuntimeWarning: divide by zero encountered in divide\n", + ":89: RuntimeWarning: invalid value encountered in divide\n", + ":89: RuntimeWarning: divide by zero encountered in divide\n", + ":89: RuntimeWarning: invalid value encountered in divide\n", + ":89: RuntimeWarning: divide by zero encountered in divide\n", + ":89: RuntimeWarning: invalid value encountered in divide\n" + ] + }, + { + "name": "stdout", + "output_type": "stream", + "text": [ + "SCsg Gabrr2 Gaba SCsg Gabrr2 Gaba\n", + "N_contact_pairs = 1228\n", + "N_noncontact_cell_pairs = 1228\n", + "Peri NN VLMC NN\n", + "N_contact_pairs = 393\n", + "N_noncontact_cell_pairs = 393\n", + "N_contact_pairs = 393\n", + "N_noncontact_cell_pairs = 393\n", + "Oligo NN Oligo NN\n" + ] + }, + { + "name": "stderr", + "output_type": "stream", + "text": [ + ":89: RuntimeWarning: divide by zero encountered in divide\n", + ":89: RuntimeWarning: invalid value encountered in divide\n" + ] + }, + { + "name": "stdout", + "output_type": "stream", + "text": [ + "N_contact_pairs = 43460\n", + "N_noncontact_cell_pairs = 43460\n" + ] + }, + { + "name": "stderr", + "output_type": "stream", + "text": [ + ":89: RuntimeWarning: divide by zero encountered in divide\n", + ":89: RuntimeWarning: invalid value encountered in divide\n" + ] + }, + { + "name": "stdout", + "output_type": "stream", + "text": [ + "SPA-SPFm-SPFp-POL-PIL-PoT Sp9 Glut SPA-SPFm-SPFp-POL-PIL-PoT Sp9 Glut\n", + "N_contact_pairs = 1591\n", + "N_noncontact_cell_pairs = 1591\n", + "Astro-NT NN Endo NN\n" + ] + }, + { + "name": "stderr", + "output_type": "stream", + "text": [ + ":89: RuntimeWarning: divide by zero encountered in divide\n", + ":89: RuntimeWarning: invalid value encountered in divide\n" + ] + }, + { + "name": "stdout", + "output_type": "stream", + "text": [ + "N_contact_pairs = 21973\n", + "N_noncontact_cell_pairs = 21973\n" + ] + }, + { + "name": "stderr", + "output_type": "stream", + "text": [ + ":89: RuntimeWarning: divide by zero encountered in divide\n", + ":89: RuntimeWarning: invalid value encountered in divide\n" + ] + }, + { + "name": "stdout", + "output_type": "stream", + "text": [ + "N_contact_pairs = 21973\n", + "N_noncontact_cell_pairs = 21973\n" + ] + }, + { + "name": "stderr", + "output_type": "stream", + "text": [ + ":89: RuntimeWarning: divide by zero encountered in divide\n", + ":89: RuntimeWarning: invalid value encountered in divide\n" + ] + }, + { + "name": "stdout", + "output_type": "stream", + "text": [ + "IPN Otp Crisp1 Gaba IPN Otp Crisp1 Gaba\n", + "N_contact_pairs = 917\n", + "N_noncontact_cell_pairs = 917\n", + "SCsg Gabrr2 Gaba SCsg Pde5a Glut\n", + "N_contact_pairs = 1898\n", + "N_noncontact_cell_pairs = 1898\n", + "N_contact_pairs = 1898\n", + "N_noncontact_cell_pairs = 1898\n", + "Ependymal NN SNc-VTA-RAmb Foxa1 Dopa\n", + "N_contact_pairs = 265\n", + "N_noncontact_cell_pairs = 265\n" + ] + }, + { + "name": "stderr", + "output_type": "stream", + "text": [ + ":89: RuntimeWarning: divide by zero encountered in divide\n", + ":89: RuntimeWarning: invalid value encountered in divide\n", + ":89: RuntimeWarning: divide by zero encountered in divide\n", + ":89: RuntimeWarning: invalid value encountered in divide\n", + ":89: RuntimeWarning: divide by zero encountered in divide\n", + ":89: RuntimeWarning: invalid value encountered in divide\n", + ":89: RuntimeWarning: divide by zero encountered in divide\n", + ":89: RuntimeWarning: invalid value encountered in divide\n" + ] + }, + { + "name": "stdout", + "output_type": "stream", + "text": [ + "N_contact_pairs = 265\n", + "N_noncontact_cell_pairs = 265\n", + "Astro-NT NN Oligo NN\n" + ] + }, + { + "name": "stderr", + "output_type": "stream", + "text": [ + ":89: RuntimeWarning: divide by zero encountered in divide\n", + ":89: RuntimeWarning: invalid value encountered in divide\n" + ] + }, + { + "name": "stdout", + "output_type": "stream", + "text": [ + "N_contact_pairs = 41353\n", + "N_noncontact_cell_pairs = 41353\n" + ] + }, + { + "name": "stderr", + "output_type": "stream", + "text": [ + ":89: RuntimeWarning: divide by zero encountered in divide\n", + ":89: RuntimeWarning: invalid value encountered in divide\n" + ] + }, + { + "name": "stdout", + "output_type": "stream", + "text": [ + "N_contact_pairs = 41353\n", + "N_noncontact_cell_pairs = 41353\n" + ] + }, + { + "name": "stderr", + "output_type": "stream", + "text": [ + ":89: RuntimeWarning: divide by zero encountered in divide\n", + ":89: RuntimeWarning: invalid value encountered in divide\n" + ] + }, + { + "name": "stdout", + "output_type": "stream", + "text": [ + "SCsg Pde5a Glut SCsg Pde5a Glut\n", + "N_contact_pairs = 1005\n", + "N_noncontact_cell_pairs = 1005\n", + "SCs Dmbx1 Gaba SCs Dmbx1 Gaba\n", + "N_contact_pairs = 1116\n", + "N_noncontact_cell_pairs = 1116\n", + "ND-INC Foxd2 Glut ND-INC Foxd2 Glut\n", + "N_contact_pairs = 365\n", + "N_noncontact_cell_pairs = 365\n", + "SCig-an-PPT Foxb1 Glut SCig-an-PPT Foxb1 Glut\n", + "N_contact_pairs = 1302\n", + "N_noncontact_cell_pairs = 1302\n", + "BAM NN Peri NN\n" + ] + }, + { + "name": "stderr", + "output_type": "stream", + "text": [ + ":89: RuntimeWarning: divide by zero encountered in divide\n", + ":89: RuntimeWarning: invalid value encountered in divide\n", + ":89: RuntimeWarning: divide by zero encountered in divide\n", + ":89: RuntimeWarning: invalid value encountered in divide\n", + ":89: RuntimeWarning: divide by zero encountered in divide\n", + ":89: RuntimeWarning: invalid value encountered in divide\n", + ":89: RuntimeWarning: divide by zero encountered in divide\n", + ":89: RuntimeWarning: invalid value encountered in divide\n", + ":89: RuntimeWarning: divide by zero encountered in divide\n", + ":89: RuntimeWarning: invalid value encountered in divide\n" + ] + }, + { + "name": "stdout", + "output_type": "stream", + "text": [ + "N_contact_pairs = 112\n", + "N_noncontact_cell_pairs = 112\n", + "N_contact_pairs = 112\n", + "N_noncontact_cell_pairs = 112\n", + "Lymphoid NN VLMC NN\n", + "N_contact_pairs = 99\n", + "N_noncontact_cell_pairs = 99\n", + "N_contact_pairs = 99\n", + "N_noncontact_cell_pairs = 99\n", + "PRT Tcf7l2 Gaba PRT Tcf7l2 Gaba\n", + "N_contact_pairs = 918\n", + "N_noncontact_cell_pairs = 918\n", + "PH Pitx2 Glut PH Pitx2 Glut\n", + "N_contact_pairs = 79\n", + "N_noncontact_cell_pairs = 79\n", + "Microglia NN Oligo NN\n" + ] + }, + { + "name": "stderr", + "output_type": "stream", + "text": [ + ":89: RuntimeWarning: divide by zero encountered in divide\n", + ":89: RuntimeWarning: invalid value encountered in divide\n", + ":89: RuntimeWarning: divide by zero encountered in divide\n", + ":89: RuntimeWarning: invalid value encountered in divide\n", + ":89: RuntimeWarning: divide by zero encountered in divide\n", + ":89: RuntimeWarning: invalid value encountered in divide\n", + ":89: RuntimeWarning: divide by zero encountered in divide\n", + ":89: RuntimeWarning: invalid value encountered in divide\n", + ":89: RuntimeWarning: divide by zero encountered in divide\n", + ":89: RuntimeWarning: invalid value encountered in divide\n" + ] + }, + { + "name": "stdout", + "output_type": "stream", + "text": [ + "N_contact_pairs = 8810\n", + "N_noncontact_cell_pairs = 8810\n" + ] + }, + { + "name": "stderr", + "output_type": "stream", + "text": [ + ":89: RuntimeWarning: divide by zero encountered in divide\n", + ":89: RuntimeWarning: invalid value encountered in divide\n" + ] + }, + { + "name": "stdout", + "output_type": "stream", + "text": [ + "N_contact_pairs = 8810\n", + "N_noncontact_cell_pairs = 8810\n" + ] + }, + { + "name": "stderr", + "output_type": "stream", + "text": [ + ":89: RuntimeWarning: divide by zero encountered in divide\n", + ":89: RuntimeWarning: invalid value encountered in divide\n" + ] + }, + { + "name": "stdout", + "output_type": "stream", + "text": [ + "Astro-NT NN Astro-NT NN\n", + "N_contact_pairs = 17237\n", + "N_noncontact_cell_pairs = 17237\n" + ] + }, + { + "name": "stderr", + "output_type": "stream", + "text": [ + ":89: RuntimeWarning: divide by zero encountered in divide\n", + ":89: RuntimeWarning: invalid value encountered in divide\n" + ] + }, + { + "name": "stdout", + "output_type": "stream", + "text": [ + "Astro-NT NN SCsg Pde5a Glut\n", + "N_contact_pairs = 2099\n", + "N_noncontact_cell_pairs = 2099\n" + ] + }, + { + "name": "stderr", + "output_type": "stream", + "text": [ + ":89: RuntimeWarning: divide by zero encountered in divide\n", + ":89: RuntimeWarning: invalid value encountered in divide\n" + ] + }, + { + "name": "stdout", + "output_type": "stream", + "text": [ + "N_contact_pairs = 2099\n", + "N_noncontact_cell_pairs = 2099\n", + "OPC NN OPC NN\n", + "N_contact_pairs = 703\n", + "N_noncontact_cell_pairs = 703\n" + ] + }, + { + "name": "stderr", + "output_type": "stream", + "text": [ + ":89: RuntimeWarning: divide by zero encountered in divide\n", + ":89: RuntimeWarning: invalid value encountered in divide\n", + ":89: RuntimeWarning: divide by zero encountered in divide\n", + ":89: RuntimeWarning: invalid value encountered in divide\n", + ":89: RuntimeWarning: divide by zero encountered in divide\n", + ":89: RuntimeWarning: invalid value encountered in divide\n" + ] + }, + { + "name": "stdout", + "output_type": "stream", + "text": [ + "SCop Sln Glut SCop Sln Glut\n", + "N_contact_pairs = 264\n", + "N_noncontact_cell_pairs = 264\n", + "Endo NN Lymphoid NN\n", + "N_contact_pairs = 152\n", + "N_noncontact_cell_pairs = 152\n" + ] + }, + { + "name": "stderr", + "output_type": "stream", + "text": [ + ":89: RuntimeWarning: divide by zero encountered in divide\n", + ":89: RuntimeWarning: invalid value encountered in divide\n", + ":89: RuntimeWarning: divide by zero encountered in divide\n", + ":89: RuntimeWarning: invalid value encountered in divide\n" + ] + }, + { + "name": "stdout", + "output_type": "stream", + "text": [ + "N_contact_pairs = 152\n", + "N_noncontact_cell_pairs = 152\n", + "Astro-NT NN VLMC NN\n", + "N_contact_pairs = 2475\n", + "N_noncontact_cell_pairs = 2475\n" + ] + }, + { + "name": "stderr", + "output_type": "stream", + "text": [ + ":89: RuntimeWarning: divide by zero encountered in divide\n", + ":89: RuntimeWarning: invalid value encountered in divide\n" + ] + }, + { + "name": "stdout", + "output_type": "stream", + "text": [ + "N_contact_pairs = 2475\n", + "N_noncontact_cell_pairs = 2475\n", + "Astro-NT NN SCsg Gabrr2 Gaba\n" + ] + }, + { + "name": "stderr", + "output_type": "stream", + "text": [ + ":89: RuntimeWarning: divide by zero encountered in divide\n", + ":89: RuntimeWarning: invalid value encountered in divide\n" + ] + }, + { + "name": "stdout", + "output_type": "stream", + "text": [ + "N_contact_pairs = 2543\n", + "N_noncontact_cell_pairs = 2543\n" + ] + }, + { + "name": "stderr", + "output_type": "stream", + "text": [ + ":89: RuntimeWarning: divide by zero encountered in divide\n", + ":89: RuntimeWarning: invalid value encountered in divide\n" + ] + }, + { + "name": "stdout", + "output_type": "stream", + "text": [ + "N_contact_pairs = 2543\n", + "N_noncontact_cell_pairs = 2543\n", + "APN C1ql2 Glut APN C1ql2 Glut\n", + "N_contact_pairs = 894\n", + "N_noncontact_cell_pairs = 894\n" + ] + }, + { + "name": "stderr", + "output_type": "stream", + "text": [ + ":89: RuntimeWarning: divide by zero encountered in divide\n", + ":89: RuntimeWarning: invalid value encountered in divide\n", + ":89: RuntimeWarning: divide by zero encountered in divide\n", + ":89: RuntimeWarning: invalid value encountered in divide\n", + ":89: RuntimeWarning: divide by zero encountered in divide\n", + ":89: RuntimeWarning: invalid value encountered in divide\n", + ":89: RuntimeWarning: divide by zero encountered in divide\n", + ":89: RuntimeWarning: invalid value encountered in divide\n", + ":89: RuntimeWarning: divide by zero encountered in divide\n", + ":89: RuntimeWarning: invalid value encountered in divide\n" + ] + }, + { + "name": "stdout", + "output_type": "stream", + "text": [ + "SCiw Pitx2 Glut SCiw Pitx2 Glut\n", + "N_contact_pairs = 521\n", + "N_noncontact_cell_pairs = 521\n", + "SCsg Pde5a Glut VLMC NN\n", + "N_contact_pairs = 364\n", + "N_noncontact_cell_pairs = 364\n", + "N_contact_pairs = 364\n", + "N_noncontact_cell_pairs = 364\n", + "Endo NN Microglia NN\n", + "N_contact_pairs = 4213\n", + "N_noncontact_cell_pairs = 4213\n" + ] + }, + { + "name": "stderr", + "output_type": "stream", + "text": [ + ":89: RuntimeWarning: divide by zero encountered in divide\n", + ":89: RuntimeWarning: invalid value encountered in divide\n" + ] + }, + { + "name": "stdout", + "output_type": "stream", + "text": [ + "N_contact_pairs = 4213\n", + "N_noncontact_cell_pairs = 4213\n" + ] + }, + { + "name": "stderr", + "output_type": "stream", + "text": [ + ":89: RuntimeWarning: divide by zero encountered in divide\n", + ":89: RuntimeWarning: invalid value encountered in divide\n", + ":89: RuntimeWarning: divide by zero encountered in divide\n", + ":89: RuntimeWarning: invalid value encountered in divide\n", + ":89: RuntimeWarning: divide by zero encountered in divide\n", + ":89: RuntimeWarning: invalid value encountered in divide\n" + ] + }, + { + "name": "stdout", + "output_type": "stream", + "text": [ + "SCs Pax7 Nfia Gaba SCs Pax7 Nfia Gaba\n", + "N_contact_pairs = 408\n", + "N_noncontact_cell_pairs = 408\n", + "Peri NN Peri NN\n", + "N_contact_pairs = 294\n", + "N_noncontact_cell_pairs = 294\n", + "Astro-NT NN BAM NN\n", + "N_contact_pairs = 635\n", + "N_noncontact_cell_pairs = 635\n" + ] + }, + { + "name": "stderr", + "output_type": "stream", + "text": [ + ":89: RuntimeWarning: divide by zero encountered in divide\n", + ":89: RuntimeWarning: invalid value encountered in divide\n" + ] + }, + { + "name": "stdout", + "output_type": "stream", + "text": [ + "N_contact_pairs = 635\n", + "N_noncontact_cell_pairs = 635\n", + "PRC-PAG Pax6 Glut PRC-PAG Pax6 Glut\n", + "N_contact_pairs = 108\n", + "N_noncontact_cell_pairs = 108\n", + "PAG-ND-PCG Onecut1 Gaba PAG-ND-PCG Onecut1 Gaba\n", + "N_contact_pairs = 141\n", + "N_noncontact_cell_pairs = 141\n", + "SCig Foxb1 Glut SCig Foxb1 Glut\n", + "N_contact_pairs = 402\n", + "N_noncontact_cell_pairs = 402\n", + "DTN-LDT-IPN Otp Pax3 Gaba IPN Otp Crisp1 Gaba\n", + "N_contact_pairs = 1384\n", + "N_noncontact_cell_pairs = 1384\n" + ] + }, + { + "name": "stderr", + "output_type": "stream", + "text": [ + ":89: RuntimeWarning: divide by zero encountered in divide\n", + ":89: RuntimeWarning: invalid value encountered in divide\n", + ":89: RuntimeWarning: divide by zero encountered in divide\n", + ":89: RuntimeWarning: invalid value encountered in divide\n", + ":89: RuntimeWarning: divide by zero encountered in divide\n", + ":89: RuntimeWarning: invalid value encountered in divide\n", + ":89: RuntimeWarning: divide by zero encountered in divide\n", + ":89: RuntimeWarning: invalid value encountered in divide\n", + ":89: RuntimeWarning: divide by zero encountered in divide\n", + ":89: RuntimeWarning: invalid value encountered in divide\n", + ":89: RuntimeWarning: divide by zero encountered in divide\n", + ":89: RuntimeWarning: invalid value encountered in divide\n" + ] + }, + { + "name": "stdout", + "output_type": "stream", + "text": [ + "N_contact_pairs = 1384\n", + "N_noncontact_cell_pairs = 1384\n", + "Astro-NT NN Microglia NN\n", + "N_contact_pairs = 6085\n", + "N_noncontact_cell_pairs = 6085\n" + ] + }, + { + "name": "stderr", + "output_type": "stream", + "text": [ + ":89: RuntimeWarning: divide by zero encountered in divide\n", + ":89: RuntimeWarning: invalid value encountered in divide\n" + ] + }, + { + "name": "stdout", + "output_type": "stream", + "text": [ + "N_contact_pairs = 6085\n", + "N_noncontact_cell_pairs = 6085\n" + ] + }, + { + "name": "stderr", + "output_type": "stream", + "text": [ + ":89: RuntimeWarning: divide by zero encountered in divide\n", + ":89: RuntimeWarning: invalid value encountered in divide\n", + ":89: RuntimeWarning: divide by zero encountered in divide\n", + ":89: RuntimeWarning: invalid value encountered in divide\n" + ] + }, + { + "name": "stdout", + "output_type": "stream", + "text": [ + "IF-RL-CLI-PAG Foxa1 Glut IF-RL-CLI-PAG Foxa1 Glut\n", + "N_contact_pairs = 118\n", + "N_noncontact_cell_pairs = 118\n", + "Endo NN SCsg Pde5a Glut\n", + "N_contact_pairs = 1463\n", + "N_noncontact_cell_pairs = 1463\n" + ] + }, + { + "name": "stderr", + "output_type": "stream", + "text": [ + ":89: RuntimeWarning: divide by zero encountered in divide\n", + ":89: RuntimeWarning: invalid value encountered in divide\n", + ":89: RuntimeWarning: divide by zero encountered in divide\n", + ":89: RuntimeWarning: invalid value encountered in divide\n", + ":89: RuntimeWarning: divide by zero encountered in divide\n", + ":89: RuntimeWarning: invalid value encountered in divide\n" + ] + }, + { + "name": "stdout", + "output_type": "stream", + "text": [ + "N_contact_pairs = 1463\n", + "N_noncontact_cell_pairs = 1463\n", + "PAG Ucn Glut PAG Ucn Glut\n", + "N_contact_pairs = 50\n", + "N_noncontact_cell_pairs = 50\n", + "Endo NN SCsg Gabrr2 Gaba\n", + "N_contact_pairs = 1762\n", + "N_noncontact_cell_pairs = 1762\n", + "N_contact_pairs = 1762\n", + "N_noncontact_cell_pairs = 1762\n" + ] + }, + { + "name": "stderr", + "output_type": "stream", + "text": [ + ":89: RuntimeWarning: divide by zero encountered in divide\n", + ":89: RuntimeWarning: invalid value encountered in divide\n", + ":89: RuntimeWarning: divide by zero encountered in divide\n", + ":89: RuntimeWarning: invalid value encountered in divide\n" + ] + }, + { + "name": "stdout", + "output_type": "stream", + "text": [ + "Astro-NT NN SC Lef1 Otx2 Gaba\n", + "N_contact_pairs = 885\n", + "N_noncontact_cell_pairs = 885\n" + ] + }, + { + "name": "stderr", + "output_type": "stream", + "text": [ + ":89: RuntimeWarning: divide by zero encountered in divide\n", + ":89: RuntimeWarning: invalid value encountered in divide\n", + ":89: RuntimeWarning: divide by zero encountered in divide\n", + ":89: RuntimeWarning: invalid value encountered in divide\n" + ] + }, + { + "name": "stdout", + "output_type": "stream", + "text": [ + "N_contact_pairs = 885\n", + "N_noncontact_cell_pairs = 885\n", + "PAG Pou4f2 Glut PAG Pou4f2 Glut\n", + "N_contact_pairs = 259\n", + "N_noncontact_cell_pairs = 259\n", + "SCs Dmbx1 Gaba SCsg Pde5a Glut\n", + "N_contact_pairs = 1370\n", + "N_noncontact_cell_pairs = 1370\n" + ] + }, + { + "name": "stderr", + "output_type": "stream", + "text": [ + ":89: RuntimeWarning: divide by zero encountered in divide\n", + ":89: RuntimeWarning: invalid value encountered in divide\n", + ":89: RuntimeWarning: divide by zero encountered in divide\n", + ":89: RuntimeWarning: invalid value encountered in divide\n", + ":89: RuntimeWarning: divide by zero encountered in divide\n", + ":89: RuntimeWarning: invalid value encountered in divide\n", + ":89: RuntimeWarning: divide by zero encountered in divide\n", + ":89: RuntimeWarning: invalid value encountered in divide\n", + ":89: RuntimeWarning: divide by zero encountered in divide\n", + ":89: RuntimeWarning: invalid value encountered in divide\n" + ] + }, + { + "name": "stdout", + "output_type": "stream", + "text": [ + "N_contact_pairs = 1370\n", + "N_noncontact_cell_pairs = 1370\n", + "APN C1ql4 Glut APN C1ql4 Glut\n", + "N_contact_pairs = 460\n", + "N_noncontact_cell_pairs = 460\n", + "MB-ant-ve Dmrta2 Glut MB-ant-ve Dmrta2 Glut\n", + "N_contact_pairs = 41\n", + "N_noncontact_cell_pairs = 41\n", + "SCs Dmbx1 Gaba SCsg Gabrr2 Gaba\n", + "N_contact_pairs = 1491\n", + "N_noncontact_cell_pairs = 1491\n", + "N_contact_pairs = 1491\n", + "N_noncontact_cell_pairs = 1491\n" + ] + }, + { + "name": "stderr", + "output_type": "stream", + "text": [ + ":89: RuntimeWarning: divide by zero encountered in divide\n", + ":89: RuntimeWarning: invalid value encountered in divide\n", + ":89: RuntimeWarning: divide by zero encountered in divide\n", + ":89: RuntimeWarning: invalid value encountered in divide\n", + ":89: RuntimeWarning: divide by zero encountered in divide\n", + ":89: RuntimeWarning: invalid value encountered in divide\n", + ":89: RuntimeWarning: divide by zero encountered in divide\n", + ":89: RuntimeWarning: invalid value encountered in divide\n" + ] + }, + { + "name": "stdout", + "output_type": "stream", + "text": [ + "LGv-SPFp-SPFm Nkx2-2 Tcf7l2 Gaba LGv-SPFp-SPFm Nkx2-2 Tcf7l2 Gaba\n", + "N_contact_pairs = 72\n", + "N_noncontact_cell_pairs = 72\n", + "SNr-VTA Pax5 Npas1 Gaba SNr-VTA Pax5 Npas1 Gaba\n", + "N_contact_pairs = 207\n", + "N_noncontact_cell_pairs = 207\n", + "Astro-NT NN OPC NN\n", + "N_contact_pairs = 5830\n", + "N_noncontact_cell_pairs = 5830\n" + ] + }, + { + "name": "stderr", + "output_type": "stream", + "text": [ + ":89: RuntimeWarning: divide by zero encountered in divide\n", + ":89: RuntimeWarning: invalid value encountered in divide\n" + ] + }, + { + "name": "stdout", + "output_type": "stream", + "text": [ + "N_contact_pairs = 5830\n", + "N_noncontact_cell_pairs = 5830\n" + ] + }, + { + "name": "stderr", + "output_type": "stream", + "text": [ + ":89: RuntimeWarning: divide by zero encountered in divide\n", + ":89: RuntimeWarning: invalid value encountered in divide\n" + ] + }, + { + "name": "stdout", + "output_type": "stream", + "text": [ + "OPC NN Oligo NN\n", + "N_contact_pairs = 9048\n", + "N_noncontact_cell_pairs = 9048\n" + ] + }, + { + "name": "stderr", + "output_type": "stream", + "text": [ + ":89: RuntimeWarning: divide by zero encountered in divide\n", + ":89: RuntimeWarning: invalid value encountered in divide\n" + ] + }, + { + "name": "stdout", + "output_type": "stream", + "text": [ + "N_contact_pairs = 9048\n", + "N_noncontact_cell_pairs = 9048\n" + ] + }, + { + "name": "stderr", + "output_type": "stream", + "text": [ + ":89: RuntimeWarning: divide by zero encountered in divide\n", + ":89: RuntimeWarning: invalid value encountered in divide\n", + ":89: RuntimeWarning: divide by zero encountered in divide\n", + ":89: RuntimeWarning: invalid value encountered in divide\n", + ":89: RuntimeWarning: divide by zero encountered in divide\n", + ":89: RuntimeWarning: invalid value encountered in divide\n", + ":89: RuntimeWarning: divide by zero encountered in divide\n", + ":89: RuntimeWarning: invalid value encountered in divide\n", + ":89: RuntimeWarning: divide by zero encountered in divide\n", + ":89: RuntimeWarning: invalid value encountered in divide\n" + ] + }, + { + "name": "stdout", + "output_type": "stream", + "text": [ + "PAG-PPN Pax5 Sox21 Gaba PAG-PPN Pax5 Sox21 Gaba\n", + "N_contact_pairs = 53\n", + "N_noncontact_cell_pairs = 53\n", + "Astroependymal NN Ependymal NN\n", + "N_contact_pairs = 108\n", + "N_noncontact_cell_pairs = 108\n", + "N_contact_pairs = 108\n", + "N_noncontact_cell_pairs = 108\n", + "SC Lef1 Otx2 Gaba SCsg Pde5a Glut\n", + "N_contact_pairs = 641\n", + "N_noncontact_cell_pairs = 641\n", + "N_contact_pairs = 641\n", + "N_noncontact_cell_pairs = 641\n", + "PRC-PAG Tcf7l2 Irx2 Glut PRC-PAG Tcf7l2 Irx2 Glut\n", + "N_contact_pairs = 278\n", + "N_noncontact_cell_pairs = 278\n", + "PAG-MRN-RN Foxa2 Gaba PAG-MRN-RN Foxa2 Gaba\n", + "N_contact_pairs = 49\n", + "N_noncontact_cell_pairs = 49\n", + "Astro-NT NN Peri NN\n" + ] + }, + { + "name": "stderr", + "output_type": "stream", + "text": [ + ":89: RuntimeWarning: divide by zero encountered in divide\n", + ":89: RuntimeWarning: invalid value encountered in divide\n", + ":89: RuntimeWarning: divide by zero encountered in divide\n", + ":89: RuntimeWarning: invalid value encountered in divide\n", + ":89: RuntimeWarning: divide by zero encountered in divide\n", + ":89: RuntimeWarning: invalid value encountered in divide\n" + ] + }, + { + "name": "stdout", + "output_type": "stream", + "text": [ + "N_contact_pairs = 3360\n", + "N_noncontact_cell_pairs = 3360\n" + ] + }, + { + "name": "stderr", + "output_type": "stream", + "text": [ + ":89: RuntimeWarning: divide by zero encountered in divide\n", + ":89: RuntimeWarning: invalid value encountered in divide\n" + ] + }, + { + "name": "stdout", + "output_type": "stream", + "text": [ + "N_contact_pairs = 3360\n", + "N_noncontact_cell_pairs = 3360\n", + "SC Lef1 Otx2 Gaba SCs Dmbx1 Gaba\n" + ] + }, + { + "name": "stderr", + "output_type": "stream", + "text": [ + ":89: RuntimeWarning: divide by zero encountered in divide\n", + ":89: RuntimeWarning: invalid value encountered in divide\n", + ":89: RuntimeWarning: divide by zero encountered in divide\n", + ":89: RuntimeWarning: invalid value encountered in divide\n", + ":89: RuntimeWarning: divide by zero encountered in divide\n", + ":89: RuntimeWarning: invalid value encountered in divide\n", + ":89: RuntimeWarning: divide by zero encountered in divide\n", + ":89: RuntimeWarning: invalid value encountered in divide\n" + ] + }, + { + "name": "stdout", + "output_type": "stream", + "text": [ + "N_contact_pairs = 591\n", + "N_noncontact_cell_pairs = 591\n", + "N_contact_pairs = 591\n", + "N_noncontact_cell_pairs = 591\n", + "SCm-PAG Cdh23 Gaba SCm-PAG Cdh23 Gaba\n", + "N_contact_pairs = 83\n", + "N_noncontact_cell_pairs = 83\n", + "OPC NN SPA-SPFm-SPFp-POL-PIL-PoT Sp9 Glut\n", + "N_contact_pairs = 448\n", + "N_noncontact_cell_pairs = 448\n", + "N_contact_pairs = 448\n", + "N_noncontact_cell_pairs = 448\n" + ] + }, + { + "name": "stderr", + "output_type": "stream", + "text": [ + ":89: RuntimeWarning: divide by zero encountered in divide\n", + ":89: RuntimeWarning: invalid value encountered in divide\n", + ":89: RuntimeWarning: divide by zero encountered in divide\n", + ":89: RuntimeWarning: invalid value encountered in divide\n", + ":89: RuntimeWarning: divide by zero encountered in divide\n", + ":89: RuntimeWarning: invalid value encountered in divide\n" + ] + }, + { + "name": "stdout", + "output_type": "stream", + "text": [ + "Microglia NN Peri NN\n", + "N_contact_pairs = 686\n", + "N_noncontact_cell_pairs = 686\n", + "N_contact_pairs = 686\n", + "N_noncontact_cell_pairs = 686\n", + "SC Tnnt1 Gli3 Gaba SC Tnnt1 Gli3 Gaba\n", + "N_contact_pairs = 50\n", + "N_noncontact_cell_pairs = 50\n", + "Astro-NT NN SC Tnnt1 Gli3 Gaba\n" + ] + }, + { + "name": "stderr", + "output_type": "stream", + "text": [ + ":89: RuntimeWarning: divide by zero encountered in divide\n", + ":89: RuntimeWarning: invalid value encountered in divide\n", + ":89: RuntimeWarning: divide by zero encountered in divide\n", + ":89: RuntimeWarning: invalid value encountered in divide\n" + ] + }, + { + "name": "stdout", + "output_type": "stream", + "text": [ + "N_contact_pairs = 565\n", + "N_noncontact_cell_pairs = 565\n", + "N_contact_pairs = 565\n", + "N_noncontact_cell_pairs = 565\n" + ] + }, + { + "name": "stderr", + "output_type": "stream", + "text": [ + ":89: RuntimeWarning: divide by zero encountered in divide\n", + ":89: RuntimeWarning: invalid value encountered in divide\n", + ":89: RuntimeWarning: divide by zero encountered in divide\n", + ":89: RuntimeWarning: invalid value encountered in divide\n" + ] + }, + { + "name": "stdout", + "output_type": "stream", + "text": [ + "PAG Pou4f1 Ebf2 Glut PAG Pou4f1 Ebf2 Glut\n", + "N_contact_pairs = 170\n", + "N_noncontact_cell_pairs = 170\n", + "OPC NN SNr-VTA Pax5 Npas1 Gaba\n", + "N_contact_pairs = 192\n", + "N_noncontact_cell_pairs = 192\n", + "N_contact_pairs = 192\n", + "N_noncontact_cell_pairs = 192\n", + "SC Lef1 Otx2 Gaba SC Lef1 Otx2 Gaba\n", + "N_contact_pairs = 142\n", + "N_noncontact_cell_pairs = 142\n", + "SC Bnc2 Glut SCsg Gabrr2 Gaba\n", + "N_contact_pairs = 310\n", + "N_noncontact_cell_pairs = 310\n" + ] + }, + { + "name": "stderr", + "output_type": "stream", + "text": [ + ":89: RuntimeWarning: divide by zero encountered in divide\n", + ":89: RuntimeWarning: invalid value encountered in divide\n", + ":89: RuntimeWarning: divide by zero encountered in divide\n", + ":89: RuntimeWarning: invalid value encountered in divide\n", + ":89: RuntimeWarning: divide by zero encountered in divide\n", + ":89: RuntimeWarning: invalid value encountered in divide\n", + ":89: RuntimeWarning: divide by zero encountered in divide\n", + ":89: RuntimeWarning: invalid value encountered in divide\n", + ":89: RuntimeWarning: divide by zero encountered in divide\n", + ":89: RuntimeWarning: invalid value encountered in divide\n" + ] + }, + { + "name": "stdout", + "output_type": "stream", + "text": [ + "N_contact_pairs = 310\n", + "N_noncontact_cell_pairs = 310\n", + "PAG-SC Pou4f1 Zic1 Glut PAG-SC Pou4f1 Zic1 Glut\n", + "N_contact_pairs = 160\n", + "N_noncontact_cell_pairs = 160\n", + "Oligo NN SCs Pax7 Nfia Gaba\n" + ] + }, + { + "name": "stderr", + "output_type": "stream", + "text": [ + ":89: RuntimeWarning: divide by zero encountered in divide\n", + ":89: RuntimeWarning: invalid value encountered in divide\n", + ":89: RuntimeWarning: divide by zero encountered in divide\n", + ":89: RuntimeWarning: invalid value encountered in divide\n" + ] + }, + { + "name": "stdout", + "output_type": "stream", + "text": [ + "N_contact_pairs = 1582\n", + "N_noncontact_cell_pairs = 1582\n" + ] + }, + { + "name": "stderr", + "output_type": "stream", + "text": [ + ":89: RuntimeWarning: divide by zero encountered in divide\n", + ":89: RuntimeWarning: invalid value encountered in divide\n" + ] + }, + { + "name": "stdout", + "output_type": "stream", + "text": [ + "N_contact_pairs = 1582\n", + "N_noncontact_cell_pairs = 1582\n", + "BAM NN SCsg Pde5a Glut\n", + "N_contact_pairs = 66\n", + "N_noncontact_cell_pairs = 66\n" + ] + }, + { + "name": "stderr", + "output_type": "stream", + "text": [ + ":89: RuntimeWarning: divide by zero encountered in divide\n", + ":89: RuntimeWarning: invalid value encountered in divide\n", + ":89: RuntimeWarning: divide by zero encountered in divide\n", + ":89: RuntimeWarning: invalid value encountered in divide\n", + ":89: RuntimeWarning: divide by zero encountered in divide\n", + ":89: RuntimeWarning: invalid value encountered in divide\n", + ":89: RuntimeWarning: divide by zero encountered in divide\n", + ":89: RuntimeWarning: invalid value encountered in divide\n", + ":89: RuntimeWarning: divide by zero encountered in divide\n", + ":89: RuntimeWarning: invalid value encountered in divide\n" + ] + }, + { + "name": "stdout", + "output_type": "stream", + "text": [ + "N_contact_pairs = 66\n", + "N_noncontact_cell_pairs = 66\n", + "PAG-MRN Pou3f1 Glut PAG-MRN Pou3f1 Glut\n", + "N_contact_pairs = 135\n", + "N_noncontact_cell_pairs = 135\n", + "PAG-MRN Tfap2b Glut PAG-MRN Tfap2b Glut\n", + "N_contact_pairs = 26\n", + "N_noncontact_cell_pairs = 26\n", + "Astro-NT NN PRC-PAG Tcf7l2 Irx2 Glut\n", + "N_contact_pairs = 847\n", + "N_noncontact_cell_pairs = 847\n", + "N_contact_pairs = 847\n", + "N_noncontact_cell_pairs = 847\n" + ] + }, + { + "name": "stderr", + "output_type": "stream", + "text": [ + ":89: RuntimeWarning: divide by zero encountered in divide\n", + ":89: RuntimeWarning: invalid value encountered in divide\n", + ":89: RuntimeWarning: divide by zero encountered in divide\n", + ":89: RuntimeWarning: invalid value encountered in divide\n", + ":89: RuntimeWarning: divide by zero encountered in divide\n", + ":89: RuntimeWarning: invalid value encountered in divide\n", + ":89: RuntimeWarning: divide by zero encountered in divide\n", + ":89: RuntimeWarning: invalid value encountered in divide\n" + ] + }, + { + "name": "stdout", + "output_type": "stream", + "text": [ + "Peri NN SC Lef1 Otx2 Gaba\n", + "N_contact_pairs = 102\n", + "N_noncontact_cell_pairs = 102\n", + "N_contact_pairs = 102\n", + "N_noncontact_cell_pairs = 102\n", + "Endo NN SPA-SPFm-SPFp-POL-PIL-PoT Sp9 Glut\n", + "N_contact_pairs = 1056\n", + "N_noncontact_cell_pairs = 1056\n" + ] + }, + { + "name": "stderr", + "output_type": "stream", + "text": [ + ":89: RuntimeWarning: divide by zero encountered in divide\n", + ":89: RuntimeWarning: invalid value encountered in divide\n", + ":89: RuntimeWarning: divide by zero encountered in divide\n", + ":89: RuntimeWarning: invalid value encountered in divide\n" + ] + }, + { + "name": "stdout", + "output_type": "stream", + "text": [ + "N_contact_pairs = 1056\n", + "N_noncontact_cell_pairs = 1056\n", + "Microglia NN SCsg Gabrr2 Gaba\n", + "N_contact_pairs = 332\n", + "N_noncontact_cell_pairs = 332\n", + "N_contact_pairs = 332\n", + "N_noncontact_cell_pairs = 332\n" + ] + }, + { + "name": "stderr", + "output_type": "stream", + "text": [ + ":89: RuntimeWarning: divide by zero encountered in divide\n", + ":89: RuntimeWarning: invalid value encountered in divide\n", + ":89: RuntimeWarning: divide by zero encountered in divide\n", + ":89: RuntimeWarning: invalid value encountered in divide\n", + ":89: RuntimeWarning: divide by zero encountered in divide\n", + ":89: RuntimeWarning: invalid value encountered in divide\n", + ":89: RuntimeWarning: divide by zero encountered in divide\n", + ":89: RuntimeWarning: invalid value encountered in divide\n" + ] + }, + { + "name": "stdout", + "output_type": "stream", + "text": [ + "SCig Tfap2b Chrnb3 Glut SCs Lef1 Gli3 Gaba\n", + "N_contact_pairs = 63\n", + "N_noncontact_cell_pairs = 63\n", + "N_contact_pairs = 63\n", + "N_noncontact_cell_pairs = 63\n", + "Endo NN Oligo NN\n", + "N_contact_pairs = 33338\n", + "N_noncontact_cell_pairs = 33338\n" + ] + }, + { + "name": "stderr", + "output_type": "stream", + "text": [ + ":89: RuntimeWarning: divide by zero encountered in divide\n", + ":89: RuntimeWarning: invalid value encountered in divide\n" + ] + }, + { + "name": "stdout", + "output_type": "stream", + "text": [ + "N_contact_pairs = 33338\n", + "N_noncontact_cell_pairs = 33338\n" + ] + }, + { + "name": "stderr", + "output_type": "stream", + "text": [ + ":89: RuntimeWarning: divide by zero encountered in divide\n", + ":89: RuntimeWarning: invalid value encountered in divide\n" + ] + }, + { + "name": "stdout", + "output_type": "stream", + "text": [ + "SC Otx2 Gcnt4 Gaba SCs Dmbx1 Gaba\n", + "N_contact_pairs = 199\n", + "N_noncontact_cell_pairs = 199\n", + "N_contact_pairs = 199\n", + "N_noncontact_cell_pairs = 199\n", + "SC Lef1 Otx2 Gaba SCsg Gabrr2 Gaba\n", + "N_contact_pairs = 639\n", + "N_noncontact_cell_pairs = 639\n", + "N_contact_pairs = 639\n", + "N_noncontact_cell_pairs = 639\n", + "Astro-NT NN SCs Dmbx1 Gaba\n" + ] + }, + { + "name": "stderr", + "output_type": "stream", + "text": [ + ":89: RuntimeWarning: divide by zero encountered in divide\n", + ":89: RuntimeWarning: invalid value encountered in divide\n", + ":89: RuntimeWarning: divide by zero encountered in divide\n", + ":89: RuntimeWarning: invalid value encountered in divide\n", + ":89: RuntimeWarning: divide by zero encountered in divide\n", + ":89: RuntimeWarning: invalid value encountered in divide\n", + ":89: RuntimeWarning: divide by zero encountered in divide\n", + ":89: RuntimeWarning: invalid value encountered in divide\n" + ] + }, + { + "name": "stdout", + "output_type": "stream", + "text": [ + "N_contact_pairs = 3023\n", + "N_noncontact_cell_pairs = 3023\n" + ] + }, + { + "name": "stderr", + "output_type": "stream", + "text": [ + ":89: RuntimeWarning: divide by zero encountered in divide\n", + ":89: RuntimeWarning: invalid value encountered in divide\n" + ] + }, + { + "name": "stdout", + "output_type": "stream", + "text": [ + "N_contact_pairs = 3023\n", + "N_noncontact_cell_pairs = 3023\n", + "Endo NN ND-INC Foxd2 Glut\n" + ] + }, + { + "name": "stderr", + "output_type": "stream", + "text": [ + ":89: RuntimeWarning: divide by zero encountered in divide\n", + ":89: RuntimeWarning: invalid value encountered in divide\n", + ":89: RuntimeWarning: divide by zero encountered in divide\n", + ":89: RuntimeWarning: invalid value encountered in divide\n" + ] + }, + { + "name": "stdout", + "output_type": "stream", + "text": [ + "N_contact_pairs = 512\n", + "N_noncontact_cell_pairs = 512\n", + "N_contact_pairs = 512\n", + "N_noncontact_cell_pairs = 512\n" + ] + }, + { + "name": "stderr", + "output_type": "stream", + "text": [ + ":89: RuntimeWarning: divide by zero encountered in divide\n", + ":89: RuntimeWarning: invalid value encountered in divide\n" + ] + }, + { + "name": "stdout", + "output_type": "stream", + "text": [ + "Oligo NN PAG-MRN-RN Foxa2 Gaba\n", + "N_contact_pairs = 540\n", + "N_noncontact_cell_pairs = 540\n" + ] + }, + { + "name": "stderr", + "output_type": "stream", + "text": [ + ":89: RuntimeWarning: divide by zero encountered in divide\n", + ":89: RuntimeWarning: invalid value encountered in divide\n" + ] + }, + { + "name": "stdout", + "output_type": "stream", + "text": [ + "N_contact_pairs = 540\n", + "N_noncontact_cell_pairs = 540\n", + "Oligo NN SCop Sln Glut\n" + ] + }, + { + "name": "stderr", + "output_type": "stream", + "text": [ + ":89: RuntimeWarning: divide by zero encountered in divide\n", + ":89: RuntimeWarning: invalid value encountered in divide\n" + ] + }, + { + "name": "stdout", + "output_type": "stream", + "text": [ + "N_contact_pairs = 1024\n", + "N_noncontact_cell_pairs = 1024\n" + ] + }, + { + "name": "stderr", + "output_type": "stream", + "text": [ + ":89: RuntimeWarning: divide by zero encountered in divide\n", + ":89: RuntimeWarning: invalid value encountered in divide\n" + ] + }, + { + "name": "stdout", + "output_type": "stream", + "text": [ + "N_contact_pairs = 1024\n", + "N_noncontact_cell_pairs = 1024\n", + "SC Tnnt1 Gli3 Gaba SCsg Pde5a Glut\n", + "N_contact_pairs = 244\n", + "N_noncontact_cell_pairs = 244\n" + ] + }, + { + "name": "stderr", + "output_type": "stream", + "text": [ + ":89: RuntimeWarning: divide by zero encountered in divide\n", + ":89: RuntimeWarning: invalid value encountered in divide\n", + ":89: RuntimeWarning: divide by zero encountered in divide\n", + ":89: RuntimeWarning: invalid value encountered in divide\n", + ":89: RuntimeWarning: divide by zero encountered in divide\n", + ":89: RuntimeWarning: invalid value encountered in divide\n", + ":89: RuntimeWarning: divide by zero encountered in divide\n", + ":89: RuntimeWarning: invalid value encountered in divide\n", + ":89: RuntimeWarning: divide by zero encountered in divide\n", + ":89: RuntimeWarning: invalid value encountered in divide\n", + ":89: RuntimeWarning: divide by zero encountered in divide\n", + ":89: RuntimeWarning: invalid value encountered in divide\n" + ] + }, + { + "name": "stdout", + "output_type": "stream", + "text": [ + "N_contact_pairs = 244\n", + "N_noncontact_cell_pairs = 244\n", + "SC Bnc2 Glut SCs Dmbx1 Gaba\n", + "N_contact_pairs = 333\n", + "N_noncontact_cell_pairs = 333\n", + "N_contact_pairs = 333\n", + "N_noncontact_cell_pairs = 333\n", + "Peri NN SCsg Pde5a Glut\n", + "N_contact_pairs = 206\n", + "N_noncontact_cell_pairs = 206\n", + "N_contact_pairs = 206\n", + "N_noncontact_cell_pairs = 206\n", + "PAG Pou4f2 Glut SCdg-PAG Tfap2b Glut\n", + "N_contact_pairs = 87\n", + "N_noncontact_cell_pairs = 87\n", + "N_contact_pairs = 87\n", + "N_noncontact_cell_pairs = 87\n" + ] + }, + { + "name": "stderr", + "output_type": "stream", + "text": [ + ":89: RuntimeWarning: divide by zero encountered in divide\n", + ":89: RuntimeWarning: invalid value encountered in divide\n", + ":89: RuntimeWarning: divide by zero encountered in divide\n", + ":89: RuntimeWarning: invalid value encountered in divide\n", + ":89: RuntimeWarning: divide by zero encountered in divide\n", + ":89: RuntimeWarning: invalid value encountered in divide\n" + ] + }, + { + "name": "stdout", + "output_type": "stream", + "text": [ + "posterior_HY\n" + ] + }, + { + "name": "stderr", + "output_type": "stream", + "text": [ + ":25: ImplicitModificationWarning: Trying to modify attribute `.obs` of view, initializing view as actual.\n", + ":28: ImplicitModificationWarning: Trying to modify attribute `.obs` of view, initializing view as actual.\n" + ] + }, + { + "name": "stdout", + "output_type": "stream", + "text": [ + "Tanycyte NN Tanycyte NN\n", + "N_contact_pairs = 4894\n", + "N_noncontact_cell_pairs = 1128\n", + "Ependymal NN Ependymal NN\n", + "N_contact_pairs = 1738\n", + "N_noncontact_cell_pairs = 378\n", + "SMC NN SMC NN\n", + "N_contact_pairs = 682\n", + "N_noncontact_cell_pairs = 682\n", + "VLMC NN VLMC NN\n" + ] + }, + { + "name": "stderr", + "output_type": "stream", + "text": [ + ":89: RuntimeWarning: divide by zero encountered in divide\n", + ":89: RuntimeWarning: invalid value encountered in divide\n", + ":89: RuntimeWarning: divide by zero encountered in divide\n", + ":89: RuntimeWarning: invalid value encountered in divide\n", + ":89: RuntimeWarning: divide by zero encountered in divide\n", + ":89: RuntimeWarning: invalid value encountered in divide\n", + ":89: RuntimeWarning: divide by zero encountered in divide\n", + ":89: RuntimeWarning: invalid value encountered in divide\n" + ] + }, + { + "name": "stdout", + "output_type": "stream", + "text": [ + "N_contact_pairs = 3016\n", + "N_noncontact_cell_pairs = 3016\n", + "Endo NN SMC NN\n", + "N_contact_pairs = 1128\n", + "N_noncontact_cell_pairs = 1128\n" + ] + }, + { + "name": "stderr", + "output_type": "stream", + "text": [ + ":89: RuntimeWarning: divide by zero encountered in divide\n", + ":89: RuntimeWarning: invalid value encountered in divide\n", + ":89: RuntimeWarning: divide by zero encountered in divide\n", + ":89: RuntimeWarning: invalid value encountered in divide\n", + ":89: RuntimeWarning: divide by zero encountered in divide\n", + ":89: RuntimeWarning: invalid value encountered in divide\n", + ":89: RuntimeWarning: divide by zero encountered in divide\n", + ":89: RuntimeWarning: invalid value encountered in divide\n" + ] + }, + { + "name": "stdout", + "output_type": "stream", + "text": [ + "N_contact_pairs = 1128\n", + "N_noncontact_cell_pairs = 1128\n", + "ABC NN ABC NN\n", + "N_contact_pairs = 754\n", + "N_noncontact_cell_pairs = 754\n", + "SMC NN VLMC NN\n", + "N_contact_pairs = 947\n", + "N_noncontact_cell_pairs = 947\n", + "N_contact_pairs = 947\n", + "N_noncontact_cell_pairs = 947\n", + "ABC NN VLMC NN\n", + "N_contact_pairs = 1339\n", + "N_noncontact_cell_pairs = 1339\n" + ] + }, + { + "name": "stderr", + "output_type": "stream", + "text": [ + ":89: RuntimeWarning: divide by zero encountered in divide\n", + ":89: RuntimeWarning: invalid value encountered in divide\n", + ":89: RuntimeWarning: divide by zero encountered in divide\n", + ":89: RuntimeWarning: invalid value encountered in divide\n", + ":89: RuntimeWarning: divide by zero encountered in divide\n", + ":89: RuntimeWarning: invalid value encountered in divide\n", + ":89: RuntimeWarning: divide by zero encountered in divide\n", + ":89: RuntimeWarning: invalid value encountered in divide\n" + ] + }, + { + "name": "stdout", + "output_type": "stream", + "text": [ + "N_contact_pairs = 1339\n", + "N_noncontact_cell_pairs = 1339\n", + "Endo NN VLMC NN\n", + "N_contact_pairs = 1312\n", + "N_noncontact_cell_pairs = 1312\n", + "N_contact_pairs = 1312\n", + "N_noncontact_cell_pairs = 1312\n" + ] + }, + { + "name": "stderr", + "output_type": "stream", + "text": [ + ":89: RuntimeWarning: divide by zero encountered in divide\n", + ":89: RuntimeWarning: invalid value encountered in divide\n", + ":89: RuntimeWarning: divide by zero encountered in divide\n", + ":89: RuntimeWarning: invalid value encountered in divide\n" + ] + }, + { + "name": "stdout", + "output_type": "stream", + "text": [ + "Endo NN Endo NN\n", + "N_contact_pairs = 3952\n", + "N_noncontact_cell_pairs = 3952\n", + "Endo NN Peri NN\n", + "N_contact_pairs = 1460\n", + "N_noncontact_cell_pairs = 1460\n", + "N_contact_pairs = 1460\n", + "N_noncontact_cell_pairs = 1460\n" + ] + }, + { + "name": "stderr", + "output_type": "stream", + "text": [ + ":89: RuntimeWarning: divide by zero encountered in divide\n", + ":89: RuntimeWarning: invalid value encountered in divide\n", + ":89: RuntimeWarning: divide by zero encountered in divide\n", + ":89: RuntimeWarning: invalid value encountered in divide\n", + ":89: RuntimeWarning: divide by zero encountered in divide\n", + ":89: RuntimeWarning: invalid value encountered in divide\n" + ] + }, + { + "name": "stdout", + "output_type": "stream", + "text": [ + "TU-ARH Otp Six6 Gaba TU-ARH Otp Six6 Gaba\n", + "N_contact_pairs = 1936\n", + "N_noncontact_cell_pairs = 1936\n", + "Oligo NN Oligo NN\n", + "N_contact_pairs = 11939\n", + "N_noncontact_cell_pairs = 11939\n" + ] + }, + { + "name": "stderr", + "output_type": "stream", + "text": [ + ":89: RuntimeWarning: divide by zero encountered in divide\n", + ":89: RuntimeWarning: invalid value encountered in divide\n", + ":89: RuntimeWarning: divide by zero encountered in divide\n", + ":89: RuntimeWarning: invalid value encountered in divide\n", + ":89: RuntimeWarning: divide by zero encountered in divide\n", + ":89: RuntimeWarning: invalid value encountered in divide\n" + ] + }, + { + "name": "stdout", + "output_type": "stream", + "text": [ + "BAM NN VLMC NN\n", + "N_contact_pairs = 459\n", + "N_noncontact_cell_pairs = 459\n", + "N_contact_pairs = 459\n", + "N_noncontact_cell_pairs = 459\n", + "MM Foxb1 Glut MM Foxb1 Glut\n", + "N_contact_pairs = 7755\n", + "N_noncontact_cell_pairs = 7755\n" + ] + }, + { + "name": "stderr", + "output_type": "stream", + "text": [ + ":89: RuntimeWarning: divide by zero encountered in divide\n", + ":89: RuntimeWarning: invalid value encountered in divide\n", + ":89: RuntimeWarning: divide by zero encountered in divide\n", + ":89: RuntimeWarning: invalid value encountered in divide\n", + ":89: RuntimeWarning: divide by zero encountered in divide\n", + ":89: RuntimeWarning: invalid value encountered in divide\n" + ] + }, + { + "name": "stdout", + "output_type": "stream", + "text": [ + "DMH Nkx2-4 Glut DMH Nkx2-4 Glut\n", + "N_contact_pairs = 920\n", + "N_noncontact_cell_pairs = 920\n", + "STN-PSTN Pitx2 Glut STN-PSTN Pitx2 Glut\n", + "N_contact_pairs = 2613\n", + "N_noncontact_cell_pairs = 2613\n", + "Astro-NT NN Astro-NT NN\n", + "N_contact_pairs = 7709\n", + "N_noncontact_cell_pairs = 7709\n" + ] + }, + { + "name": "stderr", + "output_type": "stream", + "text": [ + ":89: RuntimeWarning: divide by zero encountered in divide\n", + ":89: RuntimeWarning: invalid value encountered in divide\n", + ":89: RuntimeWarning: divide by zero encountered in divide\n", + ":89: RuntimeWarning: invalid value encountered in divide\n" + ] + }, + { + "name": "stdout", + "output_type": "stream", + "text": [ + "MM-ant Foxb1 Glut MM-ant Foxb1 Glut\n", + "N_contact_pairs = 4297\n", + "N_noncontact_cell_pairs = 4297\n", + "BAM NN Endo NN\n", + "N_contact_pairs = 268\n", + "N_noncontact_cell_pairs = 268\n" + ] + }, + { + "name": "stderr", + "output_type": "stream", + "text": [ + ":89: RuntimeWarning: divide by zero encountered in divide\n", + ":89: RuntimeWarning: invalid value encountered in divide\n", + ":89: RuntimeWarning: divide by zero encountered in divide\n", + ":89: RuntimeWarning: invalid value encountered in divide\n", + ":89: RuntimeWarning: divide by zero encountered in divide\n", + ":89: RuntimeWarning: invalid value encountered in divide\n", + ":89: RuntimeWarning: divide by zero encountered in divide\n", + ":89: RuntimeWarning: invalid value encountered in divide\n" + ] + }, + { + "name": "stdout", + "output_type": "stream", + "text": [ + "N_contact_pairs = 268\n", + "N_noncontact_cell_pairs = 268\n", + "ZI Pax6 Gaba ZI Pax6 Gaba\n", + "N_contact_pairs = 1992\n", + "N_noncontact_cell_pairs = 1992\n", + "PH-SUM Foxa1 Glut PH-SUM Foxa1 Glut\n", + "N_contact_pairs = 828\n", + "N_noncontact_cell_pairs = 828\n", + "PMd-LHA Foxb1 Glut PMd-LHA Foxb1 Glut\n", + "N_contact_pairs = 1348\n", + "N_noncontact_cell_pairs = 1348\n", + "VMH Nr5a1 Glut VMH Nr5a1 Glut\n" + ] + }, + { + "name": "stderr", + "output_type": "stream", + "text": [ + ":89: RuntimeWarning: divide by zero encountered in divide\n", + ":89: RuntimeWarning: invalid value encountered in divide\n", + ":89: RuntimeWarning: divide by zero encountered in divide\n", + ":89: RuntimeWarning: invalid value encountered in divide\n" + ] + }, + { + "name": "stdout", + "output_type": "stream", + "text": [ + "N_contact_pairs = 6412\n", + "N_noncontact_cell_pairs = 6412\n", + "PH-ant-LHA Otp Bsx Glut PH-ant-LHA Otp Bsx Glut\n", + "N_contact_pairs = 1412\n", + "N_noncontact_cell_pairs = 1412\n", + "TMd-DMH Foxd2 Gaba TMd-DMH Foxd2 Gaba\n", + "N_contact_pairs = 217\n", + "N_noncontact_cell_pairs = 217\n", + "BAM NN SMC NN\n", + "N_contact_pairs = 87\n", + "N_noncontact_cell_pairs = 87\n", + "N_contact_pairs = 87\n", + "N_noncontact_cell_pairs = 87\n", + "TMv-PMv Tbx3 Hist-Gaba TMv-PMv Tbx3 Hist-Gaba\n", + "N_contact_pairs = 150\n", + "N_noncontact_cell_pairs = 150\n", + "ABC NN BAM NN\n", + "N_contact_pairs = 108\n", + "N_noncontact_cell_pairs = 108\n", + "N_contact_pairs = 108\n", + "N_noncontact_cell_pairs = 108\n", + "ARH-PVp Tbx3 Gaba ARH-PVp Tbx3 Gaba\n", + "N_contact_pairs = 290\n", + "N_noncontact_cell_pairs = 290\n", + "Astro-NT NN Endo NN\n" + ] + }, + { + "name": "stderr", + "output_type": "stream", + "text": [ + ":89: RuntimeWarning: divide by zero encountered in divide\n", + ":89: RuntimeWarning: invalid value encountered in divide\n", + ":89: RuntimeWarning: divide by zero encountered in divide\n", + ":89: RuntimeWarning: invalid value encountered in divide\n", + ":89: RuntimeWarning: divide by zero encountered in divide\n", + ":89: RuntimeWarning: invalid value encountered in divide\n", + ":89: RuntimeWarning: divide by zero encountered in divide\n", + ":89: RuntimeWarning: invalid value encountered in divide\n", + ":89: RuntimeWarning: divide by zero encountered in divide\n", + ":89: RuntimeWarning: invalid value encountered in divide\n", + ":89: RuntimeWarning: divide by zero encountered in divide\n", + ":89: RuntimeWarning: invalid value encountered in divide\n", + ":89: RuntimeWarning: divide by zero encountered in divide\n", + ":89: RuntimeWarning: invalid value encountered in divide\n", + ":89: RuntimeWarning: divide by zero encountered in divide\n", + ":89: RuntimeWarning: invalid value encountered in divide\n" + ] + }, + { + "name": "stdout", + "output_type": "stream", + "text": [ + "N_contact_pairs = 8094\n", + "N_noncontact_cell_pairs = 8094\n" + ] + }, + { + "name": "stderr", + "output_type": "stream", + "text": [ + ":89: RuntimeWarning: divide by zero encountered in divide\n", + ":89: RuntimeWarning: invalid value encountered in divide\n" + ] + }, + { + "name": "stdout", + "output_type": "stream", + "text": [ + "N_contact_pairs = 8094\n", + "N_noncontact_cell_pairs = 8094\n" + ] + }, + { + "name": "stderr", + "output_type": "stream", + "text": [ + ":89: RuntimeWarning: divide by zero encountered in divide\n", + ":89: RuntimeWarning: invalid value encountered in divide\n", + ":89: RuntimeWarning: divide by zero encountered in divide\n", + ":89: RuntimeWarning: invalid value encountered in divide\n", + ":89: RuntimeWarning: divide by zero encountered in divide\n", + ":89: RuntimeWarning: invalid value encountered in divide\n" + ] + }, + { + "name": "stdout", + "output_type": "stream", + "text": [ + "Peri NN VLMC NN\n", + "N_contact_pairs = 179\n", + "N_noncontact_cell_pairs = 179\n", + "N_contact_pairs = 179\n", + "N_noncontact_cell_pairs = 179\n", + "Microglia NN Oligo NN\n", + "N_contact_pairs = 2469\n", + "N_noncontact_cell_pairs = 2469\n" + ] + }, + { + "name": "stderr", + "output_type": "stream", + "text": [ + ":89: RuntimeWarning: divide by zero encountered in divide\n", + ":89: RuntimeWarning: invalid value encountered in divide\n", + ":89: RuntimeWarning: divide by zero encountered in divide\n", + ":89: RuntimeWarning: invalid value encountered in divide\n" + ] + }, + { + "name": "stdout", + "output_type": "stream", + "text": [ + "N_contact_pairs = 2469\n", + "N_noncontact_cell_pairs = 2469\n", + "DMH-LHA Gsx1 Gaba DMH-LHA Gsx1 Gaba\n", + "N_contact_pairs = 551\n", + "N_noncontact_cell_pairs = 551\n", + "PH-LHA Foxb1 Glut PH-LHA Foxb1 Glut\n", + "N_contact_pairs = 530\n", + "N_noncontact_cell_pairs = 530\n", + "BAM NN BAM NN\n", + "N_contact_pairs = 37\n", + "N_noncontact_cell_pairs = 37\n", + "Astro-NT NN Oligo NN\n" + ] + }, + { + "name": "stderr", + "output_type": "stream", + "text": [ + ":89: RuntimeWarning: divide by zero encountered in divide\n", + ":89: RuntimeWarning: invalid value encountered in divide\n", + ":89: RuntimeWarning: divide by zero encountered in divide\n", + ":89: RuntimeWarning: invalid value encountered in divide\n", + ":89: RuntimeWarning: divide by zero encountered in divide\n", + ":89: RuntimeWarning: invalid value encountered in divide\n" + ] + }, + { + "name": "stdout", + "output_type": "stream", + "text": [ + "N_contact_pairs = 10900\n", + "N_noncontact_cell_pairs = 10900\n" + ] + }, + { + "name": "stderr", + "output_type": "stream", + "text": [ + ":89: RuntimeWarning: divide by zero encountered in divide\n", + ":89: RuntimeWarning: invalid value encountered in divide\n" + ] + }, + { + "name": "stdout", + "output_type": "stream", + "text": [ + "N_contact_pairs = 10900\n", + "N_noncontact_cell_pairs = 10900\n" + ] + }, + { + "name": "stderr", + "output_type": "stream", + "text": [ + ":89: RuntimeWarning: divide by zero encountered in divide\n", + ":89: RuntimeWarning: invalid value encountered in divide\n", + ":89: RuntimeWarning: divide by zero encountered in divide\n", + ":89: RuntimeWarning: invalid value encountered in divide\n", + ":89: RuntimeWarning: divide by zero encountered in divide\n", + ":89: RuntimeWarning: invalid value encountered in divide\n", + ":89: RuntimeWarning: divide by zero encountered in divide\n", + ":89: RuntimeWarning: invalid value encountered in divide\n", + ":89: RuntimeWarning: divide by zero encountered in divide\n", + ":89: RuntimeWarning: invalid value encountered in divide\n" + ] + }, + { + "name": "stdout", + "output_type": "stream", + "text": [ + "ARH-PVp Tbx3 Glut ARH-PVp Tbx3 Glut\n", + "N_contact_pairs = 299\n", + "N_noncontact_cell_pairs = 299\n", + "Ependymal NN Tanycyte NN\n", + "N_contact_pairs = 152\n", + "N_noncontact_cell_pairs = 152\n", + "N_contact_pairs = 152\n", + "N_noncontact_cell_pairs = 152\n", + "PMv-TMv Pitx2 Glut PMv-TMv Pitx2 Glut\n", + "N_contact_pairs = 988\n", + "N_noncontact_cell_pairs = 988\n", + "VMH Fezf1 Glut VMH Fezf1 Glut\n", + "N_contact_pairs = 952\n", + "N_noncontact_cell_pairs = 952\n", + "OPC NN Oligo NN\n", + "N_contact_pairs = 2608\n", + "N_noncontact_cell_pairs = 2608\n" + ] + }, + { + "name": "stderr", + "output_type": "stream", + "text": [ + ":89: RuntimeWarning: divide by zero encountered in divide\n", + ":89: RuntimeWarning: invalid value encountered in divide\n", + ":89: RuntimeWarning: divide by zero encountered in divide\n", + ":89: RuntimeWarning: invalid value encountered in divide\n" + ] + }, + { + "name": "stdout", + "output_type": "stream", + "text": [ + "N_contact_pairs = 2608\n", + "N_noncontact_cell_pairs = 2608\n", + "DMH Hmx2 Gaba DMH Hmx2 Gaba\n", + "N_contact_pairs = 886\n", + "N_noncontact_cell_pairs = 886\n", + "Microglia NN Peri NN\n", + "N_contact_pairs = 282\n", + "N_noncontact_cell_pairs = 282\n" + ] + }, + { + "name": "stderr", + "output_type": "stream", + "text": [ + ":89: RuntimeWarning: divide by zero encountered in divide\n", + ":89: RuntimeWarning: invalid value encountered in divide\n", + ":89: RuntimeWarning: divide by zero encountered in divide\n", + ":89: RuntimeWarning: invalid value encountered in divide\n", + ":89: RuntimeWarning: divide by zero encountered in divide\n", + ":89: RuntimeWarning: invalid value encountered in divide\n", + ":89: RuntimeWarning: divide by zero encountered in divide\n", + ":89: RuntimeWarning: invalid value encountered in divide\n" + ] + }, + { + "name": "stdout", + "output_type": "stream", + "text": [ + "N_contact_pairs = 282\n", + "N_noncontact_cell_pairs = 282\n", + "Endo NN MM Foxb1 Glut\n", + "N_contact_pairs = 3333\n", + "N_noncontact_cell_pairs = 3333\n" + ] + }, + { + "name": "stderr", + "output_type": "stream", + "text": [ + ":89: RuntimeWarning: divide by zero encountered in divide\n", + ":89: RuntimeWarning: invalid value encountered in divide\n", + ":89: RuntimeWarning: divide by zero encountered in divide\n", + ":89: RuntimeWarning: invalid value encountered in divide\n" + ] + }, + { + "name": "stdout", + "output_type": "stream", + "text": [ + "N_contact_pairs = 3333\n", + "N_noncontact_cell_pairs = 3333\n", + "Astro-NT NN Microglia NN\n", + "N_contact_pairs = 2147\n", + "N_noncontact_cell_pairs = 2147\n" + ] + }, + { + "name": "stderr", + "output_type": "stream", + "text": [ + ":89: RuntimeWarning: divide by zero encountered in divide\n", + ":89: RuntimeWarning: invalid value encountered in divide\n", + ":89: RuntimeWarning: divide by zero encountered in divide\n", + ":89: RuntimeWarning: invalid value encountered in divide\n" + ] + }, + { + "name": "stdout", + "output_type": "stream", + "text": [ + "N_contact_pairs = 2147\n", + "N_noncontact_cell_pairs = 2147\n", + "OPC NN OPC NN\n", + "N_contact_pairs = 296\n", + "N_noncontact_cell_pairs = 296\n", + "ARH-PVp Tbx3 Gaba TU-ARH Otp Six6 Gaba\n", + "N_contact_pairs = 471\n", + "N_noncontact_cell_pairs = 471\n", + "N_contact_pairs = 471\n", + "N_noncontact_cell_pairs = 471\n", + "Endo NN Oligo NN\n" + ] + }, + { + "name": "stderr", + "output_type": "stream", + "text": [ + ":89: RuntimeWarning: divide by zero encountered in divide\n", + ":89: RuntimeWarning: invalid value encountered in divide\n", + ":89: RuntimeWarning: divide by zero encountered in divide\n", + ":89: RuntimeWarning: invalid value encountered in divide\n", + ":89: RuntimeWarning: divide by zero encountered in divide\n", + ":89: RuntimeWarning: invalid value encountered in divide\n" + ] + }, + { + "name": "stdout", + "output_type": "stream", + "text": [ + "N_contact_pairs = 8630\n", + "N_noncontact_cell_pairs = 8630\n" + ] + }, + { + "name": "stderr", + "output_type": "stream", + "text": [ + ":89: RuntimeWarning: divide by zero encountered in divide\n", + ":89: RuntimeWarning: invalid value encountered in divide\n" + ] + }, + { + "name": "stdout", + "output_type": "stream", + "text": [ + "N_contact_pairs = 8630\n", + "N_noncontact_cell_pairs = 8630\n" + ] + }, + { + "name": "stderr", + "output_type": "stream", + "text": [ + ":89: RuntimeWarning: divide by zero encountered in divide\n", + ":89: RuntimeWarning: invalid value encountered in divide\n", + ":89: RuntimeWarning: divide by zero encountered in divide\n", + ":89: RuntimeWarning: invalid value encountered in divide\n", + ":89: RuntimeWarning: divide by zero encountered in divide\n", + ":89: RuntimeWarning: invalid value encountered in divide\n" + ] + }, + { + "name": "stdout", + "output_type": "stream", + "text": [ + "Microglia NN Microglia NN\n", + "N_contact_pairs = 226\n", + "N_noncontact_cell_pairs = 226\n", + "PH Pitx2 Glut PH Pitx2 Glut\n", + "N_contact_pairs = 210\n", + "N_noncontact_cell_pairs = 210\n", + "Endo NN Microglia NN\n", + "N_contact_pairs = 1388\n", + "N_noncontact_cell_pairs = 1388\n" + ] + }, + { + "name": "stderr", + "output_type": "stream", + "text": [ + ":89: RuntimeWarning: divide by zero encountered in divide\n", + ":89: RuntimeWarning: invalid value encountered in divide\n", + ":89: RuntimeWarning: divide by zero encountered in divide\n", + ":89: RuntimeWarning: invalid value encountered in divide\n", + ":89: RuntimeWarning: divide by zero encountered in divide\n", + ":89: RuntimeWarning: invalid value encountered in divide\n" + ] + }, + { + "name": "stdout", + "output_type": "stream", + "text": [ + "N_contact_pairs = 1388\n", + "N_noncontact_cell_pairs = 1388\n", + "ARH-PVp Tbx3 Glut Endo NN\n", + "N_contact_pairs = 230\n", + "N_noncontact_cell_pairs = 230\n", + "N_contact_pairs = 230\n", + "N_noncontact_cell_pairs = 230\n", + "Astro-NT NN BAM NN\n" + ] + }, + { + "name": "stderr", + "output_type": "stream", + "text": [ + ":89: RuntimeWarning: divide by zero encountered in divide\n", + ":89: RuntimeWarning: invalid value encountered in divide\n", + ":89: RuntimeWarning: divide by zero encountered in divide\n", + ":89: RuntimeWarning: invalid value encountered in divide\n" + ] + }, + { + "name": "stdout", + "output_type": "stream", + "text": [ + "N_contact_pairs = 232\n", + "N_noncontact_cell_pairs = 232\n", + "N_contact_pairs = 232\n", + "N_noncontact_cell_pairs = 232\n", + "LHA Pmch Glut LHA Pmch Glut\n", + "N_contact_pairs = 63\n", + "N_noncontact_cell_pairs = 63\n", + "PH-an Pitx2 Glut PH-an Pitx2 Glut\n", + "N_contact_pairs = 51\n", + "N_noncontact_cell_pairs = 51\n", + "Peri NN Peri NN\n", + "N_contact_pairs = 100\n", + "N_noncontact_cell_pairs = 100\n" + ] + }, + { + "name": "stderr", + "output_type": "stream", + "text": [ + ":89: RuntimeWarning: divide by zero encountered in divide\n", + ":89: RuntimeWarning: invalid value encountered in divide\n", + ":89: RuntimeWarning: divide by zero encountered in divide\n", + ":89: RuntimeWarning: invalid value encountered in divide\n", + ":89: RuntimeWarning: divide by zero encountered in divide\n", + ":89: RuntimeWarning: invalid value encountered in divide\n", + ":89: RuntimeWarning: divide by zero encountered in divide\n", + ":89: RuntimeWarning: invalid value encountered in divide\n", + ":89: RuntimeWarning: divide by zero encountered in divide\n", + ":89: RuntimeWarning: invalid value encountered in divide\n" + ] + }, + { + "name": "stdout", + "output_type": "stream", + "text": [ + "Endo NN OPC NN\n", + "N_contact_pairs = 1593\n", + "N_noncontact_cell_pairs = 1593\n", + "N_contact_pairs = 1593\n", + "N_noncontact_cell_pairs = 1593\n" + ] + }, + { + "name": "stderr", + "output_type": "stream", + "text": [ + ":89: RuntimeWarning: divide by zero encountered in divide\n", + ":89: RuntimeWarning: invalid value encountered in divide\n", + ":89: RuntimeWarning: divide by zero encountered in divide\n", + ":89: RuntimeWarning: invalid value encountered in divide\n" + ] + }, + { + "name": "stdout", + "output_type": "stream", + "text": [ + "Endo NN STN-PSTN Pitx2 Glut\n", + "N_contact_pairs = 1360\n", + "N_noncontact_cell_pairs = 1360\n", + "N_contact_pairs = 1360\n", + "N_noncontact_cell_pairs = 1360\n" + ] + }, + { + "name": "stderr", + "output_type": "stream", + "text": [ + ":89: RuntimeWarning: divide by zero encountered in divide\n", + ":89: RuntimeWarning: invalid value encountered in divide\n", + ":89: RuntimeWarning: divide by zero encountered in divide\n", + ":89: RuntimeWarning: invalid value encountered in divide\n" + ] + }, + { + "name": "stdout", + "output_type": "stream", + "text": [ + "Astro-NT NN Peri NN\n", + "N_contact_pairs = 1306\n", + "N_noncontact_cell_pairs = 1306\n", + "N_contact_pairs = 1306\n", + "N_noncontact_cell_pairs = 1306\n" + ] + }, + { + "name": "stderr", + "output_type": "stream", + "text": [ + ":89: RuntimeWarning: divide by zero encountered in divide\n", + ":89: RuntimeWarning: invalid value encountered in divide\n", + ":89: RuntimeWarning: divide by zero encountered in divide\n", + ":89: RuntimeWarning: invalid value encountered in divide\n", + ":89: RuntimeWarning: divide by zero encountered in divide\n", + ":89: RuntimeWarning: invalid value encountered in divide\n", + ":89: RuntimeWarning: divide by zero encountered in divide\n", + ":89: RuntimeWarning: invalid value encountered in divide\n" + ] + }, + { + "name": "stdout", + "output_type": "stream", + "text": [ + "Endo NN LGv-ZI Otx2 Gaba\n", + "N_contact_pairs = 77\n", + "N_noncontact_cell_pairs = 77\n", + "N_contact_pairs = 77\n", + "N_noncontact_cell_pairs = 77\n", + "AHN Onecut3 Gaba AHN Onecut3 Gaba\n", + "N_contact_pairs = 94\n", + "N_noncontact_cell_pairs = 94\n", + "Astro-NT NN ZI Pax6 Gaba\n", + "N_contact_pairs = 2134\n", + "N_noncontact_cell_pairs = 2134\n", + "N_contact_pairs = 2134\n", + "N_noncontact_cell_pairs = 2134\n" + ] + }, + { + "name": "stderr", + "output_type": "stream", + "text": [ + ":89: RuntimeWarning: divide by zero encountered in divide\n", + ":89: RuntimeWarning: invalid value encountered in divide\n", + ":89: RuntimeWarning: divide by zero encountered in divide\n", + ":89: RuntimeWarning: invalid value encountered in divide\n", + ":89: RuntimeWarning: divide by zero encountered in divide\n", + ":89: RuntimeWarning: invalid value encountered in divide\n", + ":89: RuntimeWarning: divide by zero encountered in divide\n", + ":89: RuntimeWarning: invalid value encountered in divide\n" + ] + }, + { + "name": "stdout", + "output_type": "stream", + "text": [ + "PVHd-DMH Lhx6 Gaba PVHd-DMH Lhx6 Gaba\n", + "N_contact_pairs = 126\n", + "N_noncontact_cell_pairs = 126\n", + "DMH-LHA Vgll2 Glut DMH-LHA Vgll2 Glut\n", + "N_contact_pairs = 56\n", + "N_noncontact_cell_pairs = 56\n", + "ABC NN SMC NN\n", + "N_contact_pairs = 59\n", + "N_noncontact_cell_pairs = 59\n", + "N_contact_pairs = 59\n", + "N_noncontact_cell_pairs = 59\n", + "DMH Nkx2-4 Glut TMd-DMH Foxd2 Gaba\n", + "N_contact_pairs = 51\n", + "N_noncontact_cell_pairs = 51\n", + "N_contact_pairs = 51\n", + "N_noncontact_cell_pairs = 51\n", + "Astro-NT NN MM Foxb1 Glut\n", + "N_contact_pairs = 3346\n", + "N_noncontact_cell_pairs = 3346\n" + ] + }, + { + "name": "stderr", + "output_type": "stream", + "text": [ + ":89: RuntimeWarning: divide by zero encountered in divide\n", + ":89: RuntimeWarning: invalid value encountered in divide\n", + ":89: RuntimeWarning: divide by zero encountered in divide\n", + ":89: RuntimeWarning: invalid value encountered in divide\n", + ":89: RuntimeWarning: divide by zero encountered in divide\n", + ":89: RuntimeWarning: invalid value encountered in divide\n", + ":89: RuntimeWarning: divide by zero encountered in divide\n", + ":89: RuntimeWarning: invalid value encountered in divide\n", + ":89: RuntimeWarning: divide by zero encountered in divide\n", + ":89: RuntimeWarning: invalid value encountered in divide\n", + ":89: RuntimeWarning: divide by zero encountered in divide\n", + ":89: RuntimeWarning: invalid value encountered in divide\n", + ":89: RuntimeWarning: divide by zero encountered in divide\n", + ":89: RuntimeWarning: invalid value encountered in divide\n" + ] + }, + { + "name": "stdout", + "output_type": "stream", + "text": [ + "N_contact_pairs = 3346\n", + "N_noncontact_cell_pairs = 3346\n", + "DMH Hmx2 Glut DMH Hmx2 Glut\n", + "N_contact_pairs = 145\n", + "N_noncontact_cell_pairs = 145\n", + "ARH-PVp Tbx3 Glut DMH-LHA Gsx1 Gaba\n", + "N_contact_pairs = 220\n", + "N_noncontact_cell_pairs = 220\n", + "N_contact_pairs = 220\n", + "N_noncontact_cell_pairs = 220\n", + "LGv-ZI Otx2 Gaba Oligo NN\n" + ] + }, + { + "name": "stderr", + "output_type": "stream", + "text": [ + ":89: RuntimeWarning: divide by zero encountered in divide\n", + ":89: RuntimeWarning: invalid value encountered in divide\n", + ":89: RuntimeWarning: divide by zero encountered in divide\n", + ":89: RuntimeWarning: invalid value encountered in divide\n", + ":89: RuntimeWarning: divide by zero encountered in divide\n", + ":89: RuntimeWarning: invalid value encountered in divide\n" + ] + }, + { + "name": "stdout", + "output_type": "stream", + "text": [ + "N_contact_pairs = 152\n", + "N_noncontact_cell_pairs = 152\n", + "N_contact_pairs = 152\n", + "N_noncontact_cell_pairs = 152\n", + "Astro-NT NN OPC NN\n" + ] + }, + { + "name": "stderr", + "output_type": "stream", + "text": [ + ":89: RuntimeWarning: divide by zero encountered in divide\n", + ":89: RuntimeWarning: invalid value encountered in divide\n", + ":89: RuntimeWarning: divide by zero encountered in divide\n", + ":89: RuntimeWarning: invalid value encountered in divide\n" + ] + }, + { + "name": "stdout", + "output_type": "stream", + "text": [ + "N_contact_pairs = 2445\n", + "N_noncontact_cell_pairs = 2445\n", + "N_contact_pairs = 2445\n", + "N_noncontact_cell_pairs = 2445\n" + ] + }, + { + "name": "stderr", + "output_type": "stream", + "text": [ + ":89: RuntimeWarning: divide by zero encountered in divide\n", + ":89: RuntimeWarning: invalid value encountered in divide\n", + ":89: RuntimeWarning: divide by zero encountered in divide\n", + ":89: RuntimeWarning: invalid value encountered in divide\n" + ] + }, + { + "name": "stdout", + "output_type": "stream", + "text": [ + "Endo NN ZI Pax6 Gaba\n", + "N_contact_pairs = 2040\n", + "N_noncontact_cell_pairs = 2040\n", + "N_contact_pairs = 2040\n", + "N_noncontact_cell_pairs = 2040\n" + ] + }, + { + "name": "stderr", + "output_type": "stream", + "text": [ + ":89: RuntimeWarning: divide by zero encountered in divide\n", + ":89: RuntimeWarning: invalid value encountered in divide\n" + ] + }, + { + "name": "stdout", + "output_type": "stream", + "text": [ + "Oligo NN ZI Pax6 Gaba\n", + "N_contact_pairs = 4499\n", + "N_noncontact_cell_pairs = 4499\n" + ] + }, + { + "name": "stderr", + "output_type": "stream", + "text": [ + ":89: RuntimeWarning: divide by zero encountered in divide\n", + ":89: RuntimeWarning: invalid value encountered in divide\n" + ] + }, + { + "name": "stdout", + "output_type": "stream", + "text": [ + "N_contact_pairs = 4499\n", + "N_noncontact_cell_pairs = 4499\n", + "Astro-NT NN SMC NN\n" + ] + }, + { + "name": "stderr", + "output_type": "stream", + "text": [ + ":89: RuntimeWarning: divide by zero encountered in divide\n", + ":89: RuntimeWarning: invalid value encountered in divide\n", + ":89: RuntimeWarning: divide by zero encountered in divide\n", + ":89: RuntimeWarning: invalid value encountered in divide\n" + ] + }, + { + "name": "stdout", + "output_type": "stream", + "text": [ + "N_contact_pairs = 623\n", + "N_noncontact_cell_pairs = 623\n", + "N_contact_pairs = 623\n", + "N_noncontact_cell_pairs = 623\n", + "Microglia NN TMv-PMv Tbx3 Hist-Gaba\n", + "N_contact_pairs = 83\n", + "N_noncontact_cell_pairs = 83\n" + ] + }, + { + "name": "stderr", + "output_type": "stream", + "text": [ + ":89: RuntimeWarning: divide by zero encountered in divide\n", + ":89: RuntimeWarning: invalid value encountered in divide\n", + ":89: RuntimeWarning: divide by zero encountered in divide\n", + ":89: RuntimeWarning: invalid value encountered in divide\n", + ":89: RuntimeWarning: divide by zero encountered in divide\n", + ":89: RuntimeWarning: invalid value encountered in divide\n", + ":89: RuntimeWarning: divide by zero encountered in divide\n", + ":89: RuntimeWarning: invalid value encountered in divide\n" + ] + }, + { + "name": "stdout", + "output_type": "stream", + "text": [ + "N_contact_pairs = 83\n", + "N_noncontact_cell_pairs = 83\n", + "Oligo NN Peri NN\n", + "N_contact_pairs = 1376\n", + "N_noncontact_cell_pairs = 1376\n", + "N_contact_pairs = 1376\n", + "N_noncontact_cell_pairs = 1376\n", + "Astro-NT NN PH Pitx2 Glut\n", + "N_contact_pairs = 592\n", + "N_noncontact_cell_pairs = 592\n" + ] + }, + { + "name": "stderr", + "output_type": "stream", + "text": [ + ":89: RuntimeWarning: divide by zero encountered in divide\n", + ":89: RuntimeWarning: invalid value encountered in divide\n", + ":89: RuntimeWarning: divide by zero encountered in divide\n", + ":89: RuntimeWarning: invalid value encountered in divide\n" + ] + }, + { + "name": "stdout", + "output_type": "stream", + "text": [ + "N_contact_pairs = 592\n", + "N_noncontact_cell_pairs = 592\n", + "ARH-PVp Tbx3 Gaba Endo NN\n", + "N_contact_pairs = 146\n", + "N_noncontact_cell_pairs = 146\n", + "N_contact_pairs = 146\n", + "N_noncontact_cell_pairs = 146\n", + "DMH Prdm13 Gaba DMH Prdm13 Gaba\n", + "N_contact_pairs = 50\n", + "N_noncontact_cell_pairs = 50\n", + "ARH-PVp Tbx3 Glut Microglia NN\n" + ] + }, + { + "name": "stderr", + "output_type": "stream", + "text": [ + ":89: RuntimeWarning: divide by zero encountered in divide\n", + ":89: RuntimeWarning: invalid value encountered in divide\n", + ":89: RuntimeWarning: divide by zero encountered in divide\n", + ":89: RuntimeWarning: invalid value encountered in divide\n", + ":89: RuntimeWarning: divide by zero encountered in divide\n", + ":89: RuntimeWarning: invalid value encountered in divide\n", + ":89: RuntimeWarning: divide by zero encountered in divide\n", + ":89: RuntimeWarning: invalid value encountered in divide\n", + ":89: RuntimeWarning: divide by zero encountered in divide\n", + ":89: RuntimeWarning: invalid value encountered in divide\n", + ":89: RuntimeWarning: divide by zero encountered in divide\n", + ":89: RuntimeWarning: invalid value encountered in divide\n" + ] + }, + { + "name": "stdout", + "output_type": "stream", + "text": [ + "N_contact_pairs = 100\n", + "N_noncontact_cell_pairs = 100\n", + "N_contact_pairs = 100\n", + "N_noncontact_cell_pairs = 100\n", + "Astro-NT NN PH-an Pitx2 Glut\n", + "N_contact_pairs = 251\n", + "N_noncontact_cell_pairs = 251\n", + "N_contact_pairs = 251\n", + "N_noncontact_cell_pairs = 251\n" + ] + }, + { + "name": "stderr", + "output_type": "stream", + "text": [ + ":89: RuntimeWarning: divide by zero encountered in divide\n", + ":89: RuntimeWarning: invalid value encountered in divide\n", + ":89: RuntimeWarning: divide by zero encountered in divide\n", + ":89: RuntimeWarning: invalid value encountered in divide\n", + ":89: RuntimeWarning: divide by zero encountered in divide\n", + ":89: RuntimeWarning: invalid value encountered in divide\n" + ] + }, + { + "name": "stdout", + "output_type": "stream", + "text": [ + "Endo NN PH-LHA Foxb1 Glut\n", + "N_contact_pairs = 595\n", + "N_noncontact_cell_pairs = 595\n", + "N_contact_pairs = 595\n", + "N_noncontact_cell_pairs = 595\n" + ] + }, + { + "name": "stderr", + "output_type": "stream", + "text": [ + ":89: RuntimeWarning: divide by zero encountered in divide\n", + ":89: RuntimeWarning: invalid value encountered in divide\n" + ] + }, + { + "name": "stdout", + "output_type": "stream", + "text": [ + "posterior_MB\n" + ] + }, + { + "name": "stderr", + "output_type": "stream", + "text": [ + ":25: ImplicitModificationWarning: Trying to modify attribute `.obs` of view, initializing view as actual.\n", + ":28: ImplicitModificationWarning: Trying to modify attribute `.obs` of view, initializing view as actual.\n" + ] + }, + { + "name": "stdout", + "output_type": "stream", + "text": [ + "VLMC NN VLMC NN\n", + "N_contact_pairs = 5673\n", + "N_noncontact_cell_pairs = 5673\n" + ] + }, + { + "name": "stderr", + "output_type": "stream", + "text": [ + ":89: RuntimeWarning: divide by zero encountered in divide\n", + ":89: RuntimeWarning: invalid value encountered in divide\n", + ":89: RuntimeWarning: divide by zero encountered in divide\n", + ":89: RuntimeWarning: invalid value encountered in divide\n", + ":89: RuntimeWarning: divide by zero encountered in divide\n", + ":89: RuntimeWarning: invalid value encountered in divide\n" + ] + }, + { + "name": "stdout", + "output_type": "stream", + "text": [ + "SMC NN SMC NN\n", + "N_contact_pairs = 1827\n", + "N_noncontact_cell_pairs = 1827\n", + "Ependymal NN Ependymal NN\n", + "N_contact_pairs = 2120\n", + "N_noncontact_cell_pairs = 190\n", + "SMC NN VLMC NN\n", + "N_contact_pairs = 2167\n", + "N_noncontact_cell_pairs = 2167\n" + ] + }, + { + "name": "stderr", + "output_type": "stream", + "text": [ + ":89: RuntimeWarning: divide by zero encountered in divide\n", + ":89: RuntimeWarning: invalid value encountered in divide\n", + ":89: RuntimeWarning: divide by zero encountered in divide\n", + ":89: RuntimeWarning: invalid value encountered in divide\n" + ] + }, + { + "name": "stdout", + "output_type": "stream", + "text": [ + "N_contact_pairs = 2167\n", + "N_noncontact_cell_pairs = 2167\n", + "Endo NN VLMC NN\n", + "N_contact_pairs = 5099\n", + "N_noncontact_cell_pairs = 5099\n" + ] + }, + { + "name": "stderr", + "output_type": "stream", + "text": [ + ":89: RuntimeWarning: divide by zero encountered in divide\n", + ":89: RuntimeWarning: invalid value encountered in divide\n" + ] + }, + { + "name": "stdout", + "output_type": "stream", + "text": [ + "N_contact_pairs = 5099\n", + "N_noncontact_cell_pairs = 5099\n" + ] + }, + { + "name": "stderr", + "output_type": "stream", + "text": [ + ":89: RuntimeWarning: divide by zero encountered in divide\n", + ":89: RuntimeWarning: invalid value encountered in divide\n" + ] + }, + { + "name": "stdout", + "output_type": "stream", + "text": [ + "Endo NN SMC NN\n", + "N_contact_pairs = 3130\n", + "N_noncontact_cell_pairs = 3130\n" + ] + }, + { + "name": "stderr", + "output_type": "stream", + "text": [ + ":89: RuntimeWarning: divide by zero encountered in divide\n", + ":89: RuntimeWarning: invalid value encountered in divide\n" + ] + }, + { + "name": "stdout", + "output_type": "stream", + "text": [ + "N_contact_pairs = 3130\n", + "N_noncontact_cell_pairs = 3130\n", + "BAM NN VLMC NN\n", + "N_contact_pairs = 1417\n", + "N_noncontact_cell_pairs = 1417\n" + ] + }, + { + "name": "stderr", + "output_type": "stream", + "text": [ + ":89: RuntimeWarning: divide by zero encountered in divide\n", + ":89: RuntimeWarning: invalid value encountered in divide\n", + ":89: RuntimeWarning: divide by zero encountered in divide\n", + ":89: RuntimeWarning: invalid value encountered in divide\n", + ":89: RuntimeWarning: divide by zero encountered in divide\n", + ":89: RuntimeWarning: invalid value encountered in divide\n" + ] + }, + { + "name": "stdout", + "output_type": "stream", + "text": [ + "N_contact_pairs = 1417\n", + "N_noncontact_cell_pairs = 1417\n", + "ABC NN VLMC NN\n", + "N_contact_pairs = 1766\n", + "N_noncontact_cell_pairs = 1766\n", + "N_contact_pairs = 1766\n", + "N_noncontact_cell_pairs = 1766\n", + "ABC NN ABC NN\n" + ] + }, + { + "name": "stderr", + "output_type": "stream", + "text": [ + ":89: RuntimeWarning: divide by zero encountered in divide\n", + ":89: RuntimeWarning: invalid value encountered in divide\n", + ":89: RuntimeWarning: divide by zero encountered in divide\n", + ":89: RuntimeWarning: invalid value encountered in divide\n", + ":89: RuntimeWarning: divide by zero encountered in divide\n", + ":89: RuntimeWarning: invalid value encountered in divide\n" + ] + }, + { + "name": "stdout", + "output_type": "stream", + "text": [ + "N_contact_pairs = 732\n", + "N_noncontact_cell_pairs = 732\n", + "Endo NN Endo NN\n", + "N_contact_pairs = 10544\n", + "N_noncontact_cell_pairs = 10544\n" + ] + }, + { + "name": "stderr", + "output_type": "stream", + "text": [ + ":89: RuntimeWarning: divide by zero encountered in divide\n", + ":89: RuntimeWarning: invalid value encountered in divide\n" + ] + }, + { + "name": "stdout", + "output_type": "stream", + "text": [ + "Endo NN Peri NN\n", + "N_contact_pairs = 3683\n", + "N_noncontact_cell_pairs = 3683\n" + ] + }, + { + "name": "stderr", + "output_type": "stream", + "text": [ + ":89: RuntimeWarning: divide by zero encountered in divide\n", + ":89: RuntimeWarning: invalid value encountered in divide\n" + ] + }, + { + "name": "stdout", + "output_type": "stream", + "text": [ + "N_contact_pairs = 3683\n", + "N_noncontact_cell_pairs = 3683\n", + "Bergmann NN Bergmann NN\n", + "N_contact_pairs = 348\n", + "N_noncontact_cell_pairs = 348\n", + "BAM NN Endo NN\n" + ] + }, + { + "name": "stderr", + "output_type": "stream", + "text": [ + ":89: RuntimeWarning: divide by zero encountered in divide\n", + ":89: RuntimeWarning: invalid value encountered in divide\n", + ":89: RuntimeWarning: divide by zero encountered in divide\n", + ":89: RuntimeWarning: invalid value encountered in divide\n", + ":89: RuntimeWarning: divide by zero encountered in divide\n", + ":89: RuntimeWarning: invalid value encountered in divide\n" + ] + }, + { + "name": "stdout", + "output_type": "stream", + "text": [ + "N_contact_pairs = 1003\n", + "N_noncontact_cell_pairs = 1003\n", + "N_contact_pairs = 1003\n", + "N_noncontact_cell_pairs = 1003\n" + ] + }, + { + "name": "stderr", + "output_type": "stream", + "text": [ + ":89: RuntimeWarning: divide by zero encountered in divide\n", + ":89: RuntimeWarning: invalid value encountered in divide\n", + ":89: RuntimeWarning: divide by zero encountered in divide\n", + ":89: RuntimeWarning: invalid value encountered in divide\n", + ":89: RuntimeWarning: divide by zero encountered in divide\n", + ":89: RuntimeWarning: invalid value encountered in divide\n", + ":89: RuntimeWarning: divide by zero encountered in divide\n", + ":89: RuntimeWarning: invalid value encountered in divide\n", + ":89: RuntimeWarning: divide by zero encountered in divide\n", + ":89: RuntimeWarning: invalid value encountered in divide\n" + ] + }, + { + "name": "stdout", + "output_type": "stream", + "text": [ + "BAM NN SMC NN\n", + "N_contact_pairs = 311\n", + "N_noncontact_cell_pairs = 311\n", + "N_contact_pairs = 311\n", + "N_noncontact_cell_pairs = 311\n", + "Peri NN VLMC NN\n", + "N_contact_pairs = 629\n", + "N_noncontact_cell_pairs = 629\n", + "N_contact_pairs = 629\n", + "N_noncontact_cell_pairs = 629\n", + "Astroependymal NN Astroependymal NN\n", + "N_contact_pairs = 77\n", + "N_noncontact_cell_pairs = 77\n" + ] + }, + { + "name": "stderr", + "output_type": "stream", + "text": [ + ":89: RuntimeWarning: divide by zero encountered in divide\n", + ":89: RuntimeWarning: invalid value encountered in divide\n", + ":89: RuntimeWarning: divide by zero encountered in divide\n", + ":89: RuntimeWarning: invalid value encountered in divide\n" + ] + }, + { + "name": "stdout", + "output_type": "stream", + "text": [ + "BAM NN BAM NN\n", + "N_contact_pairs = 137\n", + "N_noncontact_cell_pairs = 137\n", + "IC Tfap2d Maf Glut IC Tfap2d Maf Glut\n", + "N_contact_pairs = 57316\n", + "N_noncontact_cell_pairs = 57316\n" + ] + }, + { + "name": "stderr", + "output_type": "stream", + "text": [ + ":89: RuntimeWarning: divide by zero encountered in divide\n", + ":89: RuntimeWarning: invalid value encountered in divide\n" + ] + }, + { + "name": "stdout", + "output_type": "stream", + "text": [ + "Lymphoid NN VLMC NN\n", + "N_contact_pairs = 171\n", + "N_noncontact_cell_pairs = 171\n", + "N_contact_pairs = 171\n", + "N_noncontact_cell_pairs = 171\n", + "Astroependymal NN VLMC NN\n", + "N_contact_pairs = 129\n", + "N_noncontact_cell_pairs = 129\n", + "N_contact_pairs = 129\n", + "N_noncontact_cell_pairs = 129\n", + "SCig Tfap2b Chrnb3 Glut SCig Tfap2b Chrnb3 Glut\n", + "N_contact_pairs = 200\n", + "N_noncontact_cell_pairs = 200\n", + "SCiw Pitx2 Glut SCiw Pitx2 Glut\n", + "N_contact_pairs = 810\n", + "N_noncontact_cell_pairs = 810\n" + ] + }, + { + "name": "stderr", + "output_type": "stream", + "text": [ + ":89: RuntimeWarning: divide by zero encountered in divide\n", + ":89: RuntimeWarning: invalid value encountered in divide\n", + ":89: RuntimeWarning: divide by zero encountered in divide\n", + ":89: RuntimeWarning: invalid value encountered in divide\n", + ":89: RuntimeWarning: divide by zero encountered in divide\n", + ":89: RuntimeWarning: invalid value encountered in divide\n", + ":89: RuntimeWarning: divide by zero encountered in divide\n", + ":89: RuntimeWarning: invalid value encountered in divide\n", + ":89: RuntimeWarning: divide by zero encountered in divide\n", + ":89: RuntimeWarning: invalid value encountered in divide\n", + ":89: RuntimeWarning: divide by zero encountered in divide\n", + ":89: RuntimeWarning: invalid value encountered in divide\n" + ] + }, + { + "name": "stdout", + "output_type": "stream", + "text": [ + "CUN-PPN Evx2 Meis2 Glut CUN-PPN Evx2 Meis2 Glut\n", + "N_contact_pairs = 1086\n", + "N_noncontact_cell_pairs = 1086\n", + "MB-MY Tph2 Glut-Sero MB-MY Tph2 Glut-Sero\n", + "N_contact_pairs = 1133\n", + "N_noncontact_cell_pairs = 1133\n", + "Astro-NT NN VLMC NN\n" + ] + }, + { + "name": "stderr", + "output_type": "stream", + "text": [ + ":89: RuntimeWarning: divide by zero encountered in divide\n", + ":89: RuntimeWarning: invalid value encountered in divide\n", + ":89: RuntimeWarning: divide by zero encountered in divide\n", + ":89: RuntimeWarning: invalid value encountered in divide\n" + ] + }, + { + "name": "stdout", + "output_type": "stream", + "text": [ + "N_contact_pairs = 3359\n", + "N_noncontact_cell_pairs = 3359\n" + ] + }, + { + "name": "stderr", + "output_type": "stream", + "text": [ + ":89: RuntimeWarning: divide by zero encountered in divide\n", + ":89: RuntimeWarning: invalid value encountered in divide\n" + ] + }, + { + "name": "stdout", + "output_type": "stream", + "text": [ + "N_contact_pairs = 3359\n", + "N_noncontact_cell_pairs = 3359\n", + "ABC NN BAM NN\n", + "N_contact_pairs = 133\n", + "N_noncontact_cell_pairs = 133\n" + ] + }, + { + "name": "stderr", + "output_type": "stream", + "text": [ + ":89: RuntimeWarning: divide by zero encountered in divide\n", + ":89: RuntimeWarning: invalid value encountered in divide\n", + ":89: RuntimeWarning: divide by zero encountered in divide\n", + ":89: RuntimeWarning: invalid value encountered in divide\n", + ":89: RuntimeWarning: divide by zero encountered in divide\n", + ":89: RuntimeWarning: invalid value encountered in divide\n", + ":89: RuntimeWarning: divide by zero encountered in divide\n", + ":89: RuntimeWarning: invalid value encountered in divide\n", + ":89: RuntimeWarning: divide by zero encountered in divide\n", + ":89: RuntimeWarning: invalid value encountered in divide\n" + ] + }, + { + "name": "stdout", + "output_type": "stream", + "text": [ + "N_contact_pairs = 133\n", + "N_noncontact_cell_pairs = 133\n", + "SCsg Gabrr2 Gaba SCsg Gabrr2 Gaba\n", + "N_contact_pairs = 1220\n", + "N_noncontact_cell_pairs = 1220\n", + "PBG Mtnr1a Glut-Chol PBG Mtnr1a Glut-Chol\n", + "N_contact_pairs = 337\n", + "N_noncontact_cell_pairs = 337\n", + "IC Six3 En2 Gaba IC Six3 En2 Gaba\n", + "N_contact_pairs = 920\n", + "N_noncontact_cell_pairs = 920\n", + "Astro-NT NN Oligo NN\n" + ] + }, + { + "name": "stderr", + "output_type": "stream", + "text": [ + ":89: RuntimeWarning: divide by zero encountered in divide\n", + ":89: RuntimeWarning: invalid value encountered in divide\n" + ] + }, + { + "name": "stdout", + "output_type": "stream", + "text": [ + "N_contact_pairs = 32854\n", + "N_noncontact_cell_pairs = 32854\n" + ] + }, + { + "name": "stderr", + "output_type": "stream", + "text": [ + ":89: RuntimeWarning: divide by zero encountered in divide\n", + ":89: RuntimeWarning: invalid value encountered in divide\n" + ] + }, + { + "name": "stdout", + "output_type": "stream", + "text": [ + "N_contact_pairs = 32854\n", + "N_noncontact_cell_pairs = 32854\n" + ] + }, + { + "name": "stderr", + "output_type": "stream", + "text": [ + ":89: RuntimeWarning: divide by zero encountered in divide\n", + ":89: RuntimeWarning: invalid value encountered in divide\n" + ] + }, + { + "name": "stdout", + "output_type": "stream", + "text": [ + "SCop Sln Glut SCop Sln Glut\n", + "N_contact_pairs = 268\n", + "N_noncontact_cell_pairs = 268\n", + "BAM NN Peri NN\n", + "N_contact_pairs = 138\n", + "N_noncontact_cell_pairs = 138\n", + "N_contact_pairs = 138\n", + "N_noncontact_cell_pairs = 138\n", + "Astro-NT NN Endo NN\n" + ] + }, + { + "name": "stderr", + "output_type": "stream", + "text": [ + ":89: RuntimeWarning: divide by zero encountered in divide\n", + ":89: RuntimeWarning: invalid value encountered in divide\n", + ":89: RuntimeWarning: divide by zero encountered in divide\n", + ":89: RuntimeWarning: invalid value encountered in divide\n", + ":89: RuntimeWarning: divide by zero encountered in divide\n", + ":89: RuntimeWarning: invalid value encountered in divide\n" + ] + }, + { + "name": "stdout", + "output_type": "stream", + "text": [ + "N_contact_pairs = 19946\n", + "N_noncontact_cell_pairs = 19946\n" + ] + }, + { + "name": "stderr", + "output_type": "stream", + "text": [ + ":89: RuntimeWarning: divide by zero encountered in divide\n", + ":89: RuntimeWarning: invalid value encountered in divide\n" + ] + }, + { + "name": "stdout", + "output_type": "stream", + "text": [ + "N_contact_pairs = 19946\n", + "N_noncontact_cell_pairs = 19946\n" + ] + }, + { + "name": "stderr", + "output_type": "stream", + "text": [ + ":89: RuntimeWarning: divide by zero encountered in divide\n", + ":89: RuntimeWarning: invalid value encountered in divide\n" + ] + }, + { + "name": "stdout", + "output_type": "stream", + "text": [ + "PAG-PPN Pax5 Sox21 Gaba PAG-PPN Pax5 Sox21 Gaba\n", + "N_contact_pairs = 158\n", + "N_noncontact_cell_pairs = 158\n", + "Microglia NN Oligo NN\n", + "N_contact_pairs = 6175\n", + "N_noncontact_cell_pairs = 6175\n" + ] + }, + { + "name": "stderr", + "output_type": "stream", + "text": [ + ":89: RuntimeWarning: divide by zero encountered in divide\n", + ":89: RuntimeWarning: invalid value encountered in divide\n", + ":89: RuntimeWarning: divide by zero encountered in divide\n", + ":89: RuntimeWarning: invalid value encountered in divide\n" + ] + }, + { + "name": "stdout", + "output_type": "stream", + "text": [ + "N_contact_pairs = 6175\n", + "N_noncontact_cell_pairs = 6175\n" + ] + }, + { + "name": "stderr", + "output_type": "stream", + "text": [ + ":89: RuntimeWarning: divide by zero encountered in divide\n", + ":89: RuntimeWarning: invalid value encountered in divide\n", + ":89: RuntimeWarning: divide by zero encountered in divide\n", + ":89: RuntimeWarning: invalid value encountered in divide\n", + ":89: RuntimeWarning: divide by zero encountered in divide\n", + ":89: RuntimeWarning: invalid value encountered in divide\n", + ":89: RuntimeWarning: divide by zero encountered in divide\n", + ":89: RuntimeWarning: invalid value encountered in divide\n", + ":89: RuntimeWarning: divide by zero encountered in divide\n", + ":89: RuntimeWarning: invalid value encountered in divide\n", + ":89: RuntimeWarning: divide by zero encountered in divide\n", + ":89: RuntimeWarning: invalid value encountered in divide\n" + ] + }, + { + "name": "stdout", + "output_type": "stream", + "text": [ + "ABC NN SMC NN\n", + "N_contact_pairs = 75\n", + "N_noncontact_cell_pairs = 75\n", + "N_contact_pairs = 75\n", + "N_noncontact_cell_pairs = 75\n", + "SCsg Pde5a Glut SCsg Pde5a Glut\n", + "N_contact_pairs = 880\n", + "N_noncontact_cell_pairs = 880\n", + "SCop Pou4f2 Neurod2 Glut SCop Pou4f2 Neurod2 Glut\n", + "N_contact_pairs = 32\n", + "N_noncontact_cell_pairs = 32\n", + "SC Lef1 Otx2 Gaba SCsg Pde5a Glut\n", + "N_contact_pairs = 689\n", + "N_noncontact_cell_pairs = 689\n", + "N_contact_pairs = 689\n", + "N_noncontact_cell_pairs = 689\n", + "OPC NN OPC NN\n" + ] + }, + { + "name": "stderr", + "output_type": "stream", + "text": [ + ":89: RuntimeWarning: divide by zero encountered in divide\n", + ":89: RuntimeWarning: invalid value encountered in divide\n", + ":89: RuntimeWarning: divide by zero encountered in divide\n", + ":89: RuntimeWarning: invalid value encountered in divide\n", + ":89: RuntimeWarning: divide by zero encountered in divide\n", + ":89: RuntimeWarning: invalid value encountered in divide\n" + ] + }, + { + "name": "stdout", + "output_type": "stream", + "text": [ + "N_contact_pairs = 551\n", + "N_noncontact_cell_pairs = 551\n", + "PPN-CUN-PCG Otp En1 Gaba PPN-CUN-PCG Otp En1 Gaba\n", + "N_contact_pairs = 192\n", + "N_noncontact_cell_pairs = 192\n", + "Astro-NT NN SCsg Pde5a Glut\n", + "N_contact_pairs = 2131\n", + "N_noncontact_cell_pairs = 2131\n" + ] + }, + { + "name": "stderr", + "output_type": "stream", + "text": [ + ":89: RuntimeWarning: divide by zero encountered in divide\n", + ":89: RuntimeWarning: invalid value encountered in divide\n", + ":89: RuntimeWarning: divide by zero encountered in divide\n", + ":89: RuntimeWarning: invalid value encountered in divide\n" + ] + }, + { + "name": "stdout", + "output_type": "stream", + "text": [ + "N_contact_pairs = 2131\n", + "N_noncontact_cell_pairs = 2131\n", + "SCs Pax7 Nfia Gaba SCs Pax7 Nfia Gaba\n", + "N_contact_pairs = 413\n", + "N_noncontact_cell_pairs = 413\n", + "PB Evx2 Glut PB Evx2 Glut\n", + "N_contact_pairs = 300\n", + "N_noncontact_cell_pairs = 300\n", + "LDT-PCG Vsx2 Lhx4 Glut LDT-PCG Vsx2 Lhx4 Glut\n", + "N_contact_pairs = 231\n", + "N_noncontact_cell_pairs = 231\n" + ] + }, + { + "name": "stderr", + "output_type": "stream", + "text": [ + ":89: RuntimeWarning: divide by zero encountered in divide\n", + ":89: RuntimeWarning: invalid value encountered in divide\n", + ":89: RuntimeWarning: divide by zero encountered in divide\n", + ":89: RuntimeWarning: invalid value encountered in divide\n", + ":89: RuntimeWarning: divide by zero encountered in divide\n", + ":89: RuntimeWarning: invalid value encountered in divide\n", + ":89: RuntimeWarning: divide by zero encountered in divide\n", + ":89: RuntimeWarning: invalid value encountered in divide\n", + ":89: RuntimeWarning: divide by zero encountered in divide\n", + ":89: RuntimeWarning: invalid value encountered in divide\n" + ] + }, + { + "name": "stdout", + "output_type": "stream", + "text": [ + "SCsg Gabrr2 Gaba SCsg Pde5a Glut\n", + "N_contact_pairs = 1594\n", + "N_noncontact_cell_pairs = 1594\n", + "N_contact_pairs = 1594\n", + "N_noncontact_cell_pairs = 1594\n", + "SCs Dmbx1 Gaba SCs Dmbx1 Gaba\n", + "N_contact_pairs = 1018\n", + "N_noncontact_cell_pairs = 1018\n", + "PAG-RN Nkx2-2 Otx1 Gaba PAG-RN Nkx2-2 Otx1 Gaba\n" + ] + }, + { + "name": "stderr", + "output_type": "stream", + "text": [ + ":89: RuntimeWarning: divide by zero encountered in divide\n", + ":89: RuntimeWarning: invalid value encountered in divide\n", + ":89: RuntimeWarning: divide by zero encountered in divide\n", + ":89: RuntimeWarning: invalid value encountered in divide\n", + ":89: RuntimeWarning: divide by zero encountered in divide\n", + ":89: RuntimeWarning: invalid value encountered in divide\n", + ":89: RuntimeWarning: divide by zero encountered in divide\n", + ":89: RuntimeWarning: invalid value encountered in divide\n", + ":89: RuntimeWarning: divide by zero encountered in divide\n", + ":89: RuntimeWarning: invalid value encountered in divide\n" + ] + }, + { + "name": "stdout", + "output_type": "stream", + "text": [ + "N_contact_pairs = 208\n", + "N_noncontact_cell_pairs = 208\n", + "SC Lef1 Otx2 Gaba SCsg Gabrr2 Gaba\n", + "N_contact_pairs = 727\n", + "N_noncontact_cell_pairs = 727\n", + "N_contact_pairs = 727\n", + "N_noncontact_cell_pairs = 727\n", + "MRN-PPN-CUN Pax8 Gaba MRN-PPN-CUN Pax8 Gaba\n", + "N_contact_pairs = 59\n", + "N_noncontact_cell_pairs = 59\n", + "Astro-NT NN Astro-NT NN\n", + "N_contact_pairs = 15603\n", + "N_noncontact_cell_pairs = 15603\n" + ] + }, + { + "name": "stderr", + "output_type": "stream", + "text": [ + ":89: RuntimeWarning: divide by zero encountered in divide\n", + ":89: RuntimeWarning: invalid value encountered in divide\n" + ] + }, + { + "name": "stdout", + "output_type": "stream", + "text": [ + "Astro-NT NN BAM NN\n", + "N_contact_pairs = 737\n", + "N_noncontact_cell_pairs = 737\n" + ] + }, + { + "name": "stderr", + "output_type": "stream", + "text": [ + ":89: RuntimeWarning: divide by zero encountered in divide\n", + ":89: RuntimeWarning: invalid value encountered in divide\n", + ":89: RuntimeWarning: divide by zero encountered in divide\n", + ":89: RuntimeWarning: invalid value encountered in divide\n" + ] + }, + { + "name": "stdout", + "output_type": "stream", + "text": [ + "N_contact_pairs = 737\n", + "N_noncontact_cell_pairs = 737\n", + "SC Lef1 Otx2 Gaba SCs Dmbx1 Gaba\n", + "N_contact_pairs = 669\n", + "N_noncontact_cell_pairs = 669\n", + "N_contact_pairs = 669\n", + "N_noncontact_cell_pairs = 669\n", + "SC-PAG Lef1 Emx2 Gaba SC-PAG Lef1 Emx2 Gaba\n", + "N_contact_pairs = 503\n", + "N_noncontact_cell_pairs = 503\n" + ] + }, + { + "name": "stderr", + "output_type": "stream", + "text": [ + ":89: RuntimeWarning: divide by zero encountered in divide\n", + ":89: RuntimeWarning: invalid value encountered in divide\n", + ":89: RuntimeWarning: divide by zero encountered in divide\n", + ":89: RuntimeWarning: invalid value encountered in divide\n", + ":89: RuntimeWarning: divide by zero encountered in divide\n", + ":89: RuntimeWarning: invalid value encountered in divide\n", + ":89: RuntimeWarning: divide by zero encountered in divide\n", + ":89: RuntimeWarning: invalid value encountered in divide\n", + ":89: RuntimeWarning: divide by zero encountered in divide\n", + ":89: RuntimeWarning: invalid value encountered in divide\n" + ] + }, + { + "name": "stdout", + "output_type": "stream", + "text": [ + "PAG Pou4f1 Ebf2 Glut PAG Pou4f1 Ebf2 Glut\n", + "N_contact_pairs = 829\n", + "N_noncontact_cell_pairs = 829\n", + "Peri NN Peri NN\n", + "N_contact_pairs = 245\n", + "N_noncontact_cell_pairs = 245\n", + "Oligo NN Oligo NN\n", + "N_contact_pairs = 30155\n", + "N_noncontact_cell_pairs = 30155\n" + ] + }, + { + "name": "stderr", + "output_type": "stream", + "text": [ + ":89: RuntimeWarning: divide by zero encountered in divide\n", + ":89: RuntimeWarning: invalid value encountered in divide\n" + ] + }, + { + "name": "stdout", + "output_type": "stream", + "text": [ + "IC Tfap2d Maf Glut SCsg Gabrr2 Gaba\n", + "N_contact_pairs = 3827\n", + "N_noncontact_cell_pairs = 3827\n" + ] + }, + { + "name": "stderr", + "output_type": "stream", + "text": [ + ":89: RuntimeWarning: divide by zero encountered in divide\n", + ":89: RuntimeWarning: invalid value encountered in divide\n" + ] + }, + { + "name": "stdout", + "output_type": "stream", + "text": [ + "N_contact_pairs = 3827\n", + "N_noncontact_cell_pairs = 3827\n", + "SC Tnnt1 Gli3 Gaba SC Tnnt1 Gli3 Gaba\n", + "N_contact_pairs = 91\n", + "N_noncontact_cell_pairs = 91\n", + "PAG Pou4f1 Bnc2 Glut PAG Pou4f1 Bnc2 Glut\n", + "N_contact_pairs = 122\n", + "N_noncontact_cell_pairs = 122\n", + "PAG-MRN Pou3f1 Glut PAG-MRN Pou3f1 Glut\n" + ] + }, + { + "name": "stderr", + "output_type": "stream", + "text": [ + ":89: RuntimeWarning: divide by zero encountered in divide\n", + ":89: RuntimeWarning: invalid value encountered in divide\n", + ":89: RuntimeWarning: divide by zero encountered in divide\n", + ":89: RuntimeWarning: invalid value encountered in divide\n", + ":89: RuntimeWarning: divide by zero encountered in divide\n", + ":89: RuntimeWarning: invalid value encountered in divide\n", + ":89: RuntimeWarning: divide by zero encountered in divide\n", + ":89: RuntimeWarning: invalid value encountered in divide\n", + ":89: RuntimeWarning: divide by zero encountered in divide\n", + ":89: RuntimeWarning: invalid value encountered in divide\n" + ] + }, + { + "name": "stdout", + "output_type": "stream", + "text": [ + "N_contact_pairs = 100\n", + "N_noncontact_cell_pairs = 100\n", + "PAG-SC Pou4f1 Zic1 Glut PAG-SC Pou4f1 Zic1 Glut\n", + "N_contact_pairs = 210\n", + "N_noncontact_cell_pairs = 210\n", + "Endo NN Lymphoid NN\n", + "N_contact_pairs = 161\n", + "N_noncontact_cell_pairs = 161\n" + ] + }, + { + "name": "stderr", + "output_type": "stream", + "text": [ + ":89: RuntimeWarning: divide by zero encountered in divide\n", + ":89: RuntimeWarning: invalid value encountered in divide\n", + ":89: RuntimeWarning: divide by zero encountered in divide\n", + ":89: RuntimeWarning: invalid value encountered in divide\n", + ":89: RuntimeWarning: divide by zero encountered in divide\n", + ":89: RuntimeWarning: invalid value encountered in divide\n" + ] + }, + { + "name": "stdout", + "output_type": "stream", + "text": [ + "N_contact_pairs = 161\n", + "N_noncontact_cell_pairs = 161\n", + "SCs Dmbx1 Gaba SCsg Pde5a Glut\n", + "N_contact_pairs = 1269\n", + "N_noncontact_cell_pairs = 1269\n", + "N_contact_pairs = 1269\n", + "N_noncontact_cell_pairs = 1269\n", + "MRN-VTN-PPN Pax5 Cdh23 Gaba MRN-VTN-PPN Pax5 Cdh23 Gaba\n", + "N_contact_pairs = 108\n", + "N_noncontact_cell_pairs = 108\n", + "IC Tfap2d Maf Glut Oligo NN\n" + ] + }, + { + "name": "stderr", + "output_type": "stream", + "text": [ + ":89: RuntimeWarning: divide by zero encountered in divide\n", + ":89: RuntimeWarning: invalid value encountered in divide\n", + ":89: RuntimeWarning: divide by zero encountered in divide\n", + ":89: RuntimeWarning: invalid value encountered in divide\n" + ] + }, + { + "name": "stdout", + "output_type": "stream", + "text": [ + "N_contact_pairs = 28648\n", + "N_noncontact_cell_pairs = 28648\n" + ] + }, + { + "name": "stderr", + "output_type": "stream", + "text": [ + ":89: RuntimeWarning: divide by zero encountered in divide\n", + ":89: RuntimeWarning: invalid value encountered in divide\n" + ] + }, + { + "name": "stdout", + "output_type": "stream", + "text": [ + "N_contact_pairs = 28648\n", + "N_noncontact_cell_pairs = 28648\n" + ] + }, + { + "name": "stderr", + "output_type": "stream", + "text": [ + ":89: RuntimeWarning: divide by zero encountered in divide\n", + ":89: RuntimeWarning: invalid value encountered in divide\n" + ] + }, + { + "name": "stdout", + "output_type": "stream", + "text": [ + "Endo NN Microglia NN\n", + "N_contact_pairs = 3182\n", + "N_noncontact_cell_pairs = 3182\n" + ] + }, + { + "name": "stderr", + "output_type": "stream", + "text": [ + ":89: RuntimeWarning: divide by zero encountered in divide\n", + ":89: RuntimeWarning: invalid value encountered in divide\n" + ] + }, + { + "name": "stdout", + "output_type": "stream", + "text": [ + "N_contact_pairs = 3182\n", + "N_noncontact_cell_pairs = 3182\n", + "Astro-NT NN SCsg Gabrr2 Gaba\n" + ] + }, + { + "name": "stderr", + "output_type": "stream", + "text": [ + ":89: RuntimeWarning: divide by zero encountered in divide\n", + ":89: RuntimeWarning: invalid value encountered in divide\n" + ] + }, + { + "name": "stdout", + "output_type": "stream", + "text": [ + "N_contact_pairs = 3013\n", + "N_noncontact_cell_pairs = 3013\n" + ] + }, + { + "name": "stderr", + "output_type": "stream", + "text": [ + ":89: RuntimeWarning: divide by zero encountered in divide\n", + ":89: RuntimeWarning: invalid value encountered in divide\n" + ] + }, + { + "name": "stdout", + "output_type": "stream", + "text": [ + "N_contact_pairs = 3013\n", + "N_noncontact_cell_pairs = 3013\n", + "SCig Foxb1 Glut SCig Foxb1 Glut\n", + "N_contact_pairs = 398\n", + "N_noncontact_cell_pairs = 398\n", + "SC Lef1 Otx2 Gaba SC Lef1 Otx2 Gaba\n", + "N_contact_pairs = 160\n", + "N_noncontact_cell_pairs = 160\n" + ] + }, + { + "name": "stderr", + "output_type": "stream", + "text": [ + ":89: RuntimeWarning: divide by zero encountered in divide\n", + ":89: RuntimeWarning: invalid value encountered in divide\n", + ":89: RuntimeWarning: divide by zero encountered in divide\n", + ":89: RuntimeWarning: invalid value encountered in divide\n", + ":89: RuntimeWarning: divide by zero encountered in divide\n", + ":89: RuntimeWarning: invalid value encountered in divide\n", + ":89: RuntimeWarning: divide by zero encountered in divide\n", + ":89: RuntimeWarning: invalid value encountered in divide\n", + ":89: RuntimeWarning: divide by zero encountered in divide\n", + ":89: RuntimeWarning: invalid value encountered in divide\n", + ":89: RuntimeWarning: divide by zero encountered in divide\n", + ":89: RuntimeWarning: invalid value encountered in divide\n", + ":89: RuntimeWarning: divide by zero encountered in divide\n", + ":89: RuntimeWarning: invalid value encountered in divide\n" + ] + }, + { + "name": "stdout", + "output_type": "stream", + "text": [ + "SCop Pou4f2 Neurod2 Glut SCop Sln Glut\n", + "N_contact_pairs = 101\n", + "N_noncontact_cell_pairs = 101\n", + "N_contact_pairs = 101\n", + "N_noncontact_cell_pairs = 101\n", + "SCig Tfap2b Chrnb3 Glut SCs Lef1 Gli3 Gaba\n", + "N_contact_pairs = 92\n", + "N_noncontact_cell_pairs = 92\n", + "N_contact_pairs = 92\n", + "N_noncontact_cell_pairs = 92\n", + "Astro-NT NN Microglia NN\n", + "N_contact_pairs = 4229\n", + "N_noncontact_cell_pairs = 4229\n" + ] + }, + { + "name": "stderr", + "output_type": "stream", + "text": [ + ":89: RuntimeWarning: divide by zero encountered in divide\n", + ":89: RuntimeWarning: invalid value encountered in divide\n" + ] + }, + { + "name": "stdout", + "output_type": "stream", + "text": [ + "N_contact_pairs = 4229\n", + "N_noncontact_cell_pairs = 4229\n" + ] + }, + { + "name": "stderr", + "output_type": "stream", + "text": [ + ":89: RuntimeWarning: divide by zero encountered in divide\n", + ":89: RuntimeWarning: invalid value encountered in divide\n", + ":89: RuntimeWarning: divide by zero encountered in divide\n", + ":89: RuntimeWarning: invalid value encountered in divide\n", + ":89: RuntimeWarning: divide by zero encountered in divide\n", + ":89: RuntimeWarning: invalid value encountered in divide\n", + ":89: RuntimeWarning: divide by zero encountered in divide\n", + ":89: RuntimeWarning: invalid value encountered in divide\n" + ] + }, + { + "name": "stdout", + "output_type": "stream", + "text": [ + "PAG-MRN Tfap2b Glut PAG-MRN Tfap2b Glut\n", + "N_contact_pairs = 145\n", + "N_noncontact_cell_pairs = 145\n", + "PAG Pou4f2 Mesi2 Glut PAG Pou4f2 Mesi2 Glut\n", + "N_contact_pairs = 173\n", + "N_noncontact_cell_pairs = 173\n", + "Microglia NN Peri NN\n", + "N_contact_pairs = 536\n", + "N_noncontact_cell_pairs = 536\n", + "N_contact_pairs = 536\n", + "N_noncontact_cell_pairs = 536\n", + "Astro-NT NN Peri NN\n" + ] + }, + { + "name": "stderr", + "output_type": "stream", + "text": [ + ":89: RuntimeWarning: divide by zero encountered in divide\n", + ":89: RuntimeWarning: invalid value encountered in divide\n" + ] + }, + { + "name": "stdout", + "output_type": "stream", + "text": [ + "N_contact_pairs = 3049\n", + "N_noncontact_cell_pairs = 3049\n" + ] + }, + { + "name": "stderr", + "output_type": "stream", + "text": [ + ":89: RuntimeWarning: divide by zero encountered in divide\n", + ":89: RuntimeWarning: invalid value encountered in divide\n" + ] + }, + { + "name": "stdout", + "output_type": "stream", + "text": [ + "N_contact_pairs = 3049\n", + "N_noncontact_cell_pairs = 3049\n", + "Astro-NT NN SMC NN\n" + ] + }, + { + "name": "stderr", + "output_type": "stream", + "text": [ + ":89: RuntimeWarning: divide by zero encountered in divide\n", + ":89: RuntimeWarning: invalid value encountered in divide\n" + ] + }, + { + "name": "stdout", + "output_type": "stream", + "text": [ + "N_contact_pairs = 1437\n", + "N_noncontact_cell_pairs = 1437\n" + ] + }, + { + "name": "stderr", + "output_type": "stream", + "text": [ + ":89: RuntimeWarning: divide by zero encountered in divide\n", + ":89: RuntimeWarning: invalid value encountered in divide\n" + ] + }, + { + "name": "stdout", + "output_type": "stream", + "text": [ + "N_contact_pairs = 1437\n", + "N_noncontact_cell_pairs = 1437\n", + "PAG-MRN-RN Foxa2 Gaba PAG-MRN-RN Foxa2 Gaba\n", + "N_contact_pairs = 190\n", + "N_noncontact_cell_pairs = 190\n", + "SC Otx2 Gcnt4 Gaba SCsg Gabrr2 Gaba\n", + "N_contact_pairs = 209\n", + "N_noncontact_cell_pairs = 209\n", + "N_contact_pairs = 209\n", + "N_noncontact_cell_pairs = 209\n", + "Microglia NN Microglia NN\n" + ] + }, + { + "name": "stderr", + "output_type": "stream", + "text": [ + ":89: RuntimeWarning: divide by zero encountered in divide\n", + ":89: RuntimeWarning: invalid value encountered in divide\n", + ":89: RuntimeWarning: divide by zero encountered in divide\n", + ":89: RuntimeWarning: invalid value encountered in divide\n", + ":89: RuntimeWarning: divide by zero encountered in divide\n", + ":89: RuntimeWarning: invalid value encountered in divide\n", + ":89: RuntimeWarning: divide by zero encountered in divide\n", + ":89: RuntimeWarning: invalid value encountered in divide\n", + ":89: RuntimeWarning: divide by zero encountered in divide\n", + ":89: RuntimeWarning: invalid value encountered in divide\n", + ":89: RuntimeWarning: divide by zero encountered in divide\n", + ":89: RuntimeWarning: invalid value encountered in divide\n", + ":89: RuntimeWarning: divide by zero encountered in divide\n", + ":89: RuntimeWarning: invalid value encountered in divide\n", + ":89: RuntimeWarning: divide by zero encountered in divide\n", + ":89: RuntimeWarning: invalid value encountered in divide\n" + ] + }, + { + "name": "stdout", + "output_type": "stream", + "text": [ + "N_contact_pairs = 374\n", + "N_noncontact_cell_pairs = 374\n", + "SCm-PAG Cdh23 Gaba SCm-PAG Cdh23 Gaba\n", + "N_contact_pairs = 68\n", + "N_noncontact_cell_pairs = 68\n", + "MB-ant-ve Dmrta2 Glut MB-ant-ve Dmrta2 Glut\n", + "N_contact_pairs = 43\n", + "N_noncontact_cell_pairs = 43\n", + "CS-PRNr-DR En1 Sox2 Gaba CS-PRNr-DR En1 Sox2 Gaba\n", + "N_contact_pairs = 48\n", + "N_noncontact_cell_pairs = 48\n", + "Astro-NT NN SCs Dmbx1 Gaba\n", + "N_contact_pairs = 3160\n", + "N_noncontact_cell_pairs = 3160\n" + ] + }, + { + "name": "stderr", + "output_type": "stream", + "text": [ + ":89: RuntimeWarning: divide by zero encountered in divide\n", + ":89: RuntimeWarning: invalid value encountered in divide\n" + ] + }, + { + "name": "stdout", + "output_type": "stream", + "text": [ + "N_contact_pairs = 3160\n", + "N_noncontact_cell_pairs = 3160\n", + "Ependymal NN Microglia NN\n", + "N_contact_pairs = 66\n", + "N_noncontact_cell_pairs = 66\n" + ] + }, + { + "name": "stderr", + "output_type": "stream", + "text": [ + ":89: RuntimeWarning: divide by zero encountered in divide\n", + ":89: RuntimeWarning: invalid value encountered in divide\n", + ":89: RuntimeWarning: divide by zero encountered in divide\n", + ":89: RuntimeWarning: invalid value encountered in divide\n", + ":89: RuntimeWarning: divide by zero encountered in divide\n", + ":89: RuntimeWarning: invalid value encountered in divide\n" + ] + }, + { + "name": "stdout", + "output_type": "stream", + "text": [ + "N_contact_pairs = 66\n", + "N_noncontact_cell_pairs = 66\n", + "ABC NN Endo NN\n", + "N_contact_pairs = 220\n", + "N_noncontact_cell_pairs = 220\n" + ] + }, + { + "name": "stderr", + "output_type": "stream", + "text": [ + ":89: RuntimeWarning: divide by zero encountered in divide\n", + ":89: RuntimeWarning: invalid value encountered in divide\n", + ":89: RuntimeWarning: divide by zero encountered in divide\n", + ":89: RuntimeWarning: invalid value encountered in divide\n", + ":89: RuntimeWarning: divide by zero encountered in divide\n", + ":89: RuntimeWarning: invalid value encountered in divide\n" + ] + }, + { + "name": "stdout", + "output_type": "stream", + "text": [ + "N_contact_pairs = 220\n", + "N_noncontact_cell_pairs = 220\n", + "CUN Evx2 Lhx2 Glut CUN Evx2 Lhx2 Glut\n", + "N_contact_pairs = 236\n", + "N_noncontact_cell_pairs = 236\n", + "SC Otx2 Gcnt4 Gaba SCs Dmbx1 Gaba\n", + "N_contact_pairs = 214\n", + "N_noncontact_cell_pairs = 214\n", + "N_contact_pairs = 214\n", + "N_noncontact_cell_pairs = 214\n", + "CS-PRNr-DR En1 Sox2 Gaba Oligo NN\n" + ] + }, + { + "name": "stderr", + "output_type": "stream", + "text": [ + ":89: RuntimeWarning: divide by zero encountered in divide\n", + ":89: RuntimeWarning: invalid value encountered in divide\n", + ":89: RuntimeWarning: divide by zero encountered in divide\n", + ":89: RuntimeWarning: invalid value encountered in divide\n" + ] + }, + { + "name": "stdout", + "output_type": "stream", + "text": [ + "N_contact_pairs = 458\n", + "N_noncontact_cell_pairs = 458\n" + ] + }, + { + "name": "stderr", + "output_type": "stream", + "text": [ + ":89: RuntimeWarning: divide by zero encountered in divide\n", + ":89: RuntimeWarning: invalid value encountered in divide\n" + ] + }, + { + "name": "stdout", + "output_type": "stream", + "text": [ + "N_contact_pairs = 458\n", + "N_noncontact_cell_pairs = 458\n", + "PAG-SC Pou4f1 Zic1 Glut SCig Foxb1 Glut\n", + "N_contact_pairs = 132\n", + "N_noncontact_cell_pairs = 132\n", + "N_contact_pairs = 132\n", + "N_noncontact_cell_pairs = 132\n", + "Endo NN SCsg Gabrr2 Gaba\n" + ] + }, + { + "name": "stderr", + "output_type": "stream", + "text": [ + ":89: RuntimeWarning: divide by zero encountered in divide\n", + ":89: RuntimeWarning: invalid value encountered in divide\n", + ":89: RuntimeWarning: divide by zero encountered in divide\n", + ":89: RuntimeWarning: invalid value encountered in divide\n", + ":89: RuntimeWarning: divide by zero encountered in divide\n", + ":89: RuntimeWarning: invalid value encountered in divide\n" + ] + }, + { + "name": "stdout", + "output_type": "stream", + "text": [ + "N_contact_pairs = 2228\n", + "N_noncontact_cell_pairs = 2228\n", + "N_contact_pairs = 2228\n", + "N_noncontact_cell_pairs = 2228\n" + ] + }, + { + "name": "stderr", + "output_type": "stream", + "text": [ + ":89: RuntimeWarning: divide by zero encountered in divide\n", + ":89: RuntimeWarning: invalid value encountered in divide\n", + ":89: RuntimeWarning: divide by zero encountered in divide\n", + ":89: RuntimeWarning: invalid value encountered in divide\n" + ] + }, + { + "name": "stdout", + "output_type": "stream", + "text": [ + "Oligo NN PPN-CUN-PCG Otp En1 Gaba\n", + "N_contact_pairs = 877\n", + "N_noncontact_cell_pairs = 877\n" + ] + }, + { + "name": "stderr", + "output_type": "stream", + "text": [ + ":89: RuntimeWarning: divide by zero encountered in divide\n", + ":89: RuntimeWarning: invalid value encountered in divide\n" + ] + }, + { + "name": "stdout", + "output_type": "stream", + "text": [ + "N_contact_pairs = 877\n", + "N_noncontact_cell_pairs = 877\n", + "PAG-SC Neurod2 Meis2 Glut PAG-SC Neurod2 Meis2 Glut\n", + "N_contact_pairs = 39\n", + "N_noncontact_cell_pairs = 39\n", + "SC Tnnt1 Gli3 Gaba SCsg Pde5a Glut\n", + "N_contact_pairs = 246\n", + "N_noncontact_cell_pairs = 246\n", + "N_contact_pairs = 246\n", + "N_noncontact_cell_pairs = 246\n" + ] + }, + { + "name": "stderr", + "output_type": "stream", + "text": [ + ":89: RuntimeWarning: divide by zero encountered in divide\n", + ":89: RuntimeWarning: invalid value encountered in divide\n", + ":89: RuntimeWarning: divide by zero encountered in divide\n", + ":89: RuntimeWarning: invalid value encountered in divide\n", + ":89: RuntimeWarning: divide by zero encountered in divide\n", + ":89: RuntimeWarning: invalid value encountered in divide\n", + ":89: RuntimeWarning: divide by zero encountered in divide\n", + ":89: RuntimeWarning: invalid value encountered in divide\n", + ":89: RuntimeWarning: divide by zero encountered in divide\n", + ":89: RuntimeWarning: invalid value encountered in divide\n", + ":89: RuntimeWarning: divide by zero encountered in divide\n", + ":89: RuntimeWarning: invalid value encountered in divide\n" + ] + }, + { + "name": "stdout", + "output_type": "stream", + "text": [ + "CS-PRNr-DR En1 Sox2 Gaba PB Evx2 Glut\n", + "N_contact_pairs = 57\n", + "N_noncontact_cell_pairs = 57\n", + "N_contact_pairs = 57\n", + "N_noncontact_cell_pairs = 57\n", + "Endo NN SCsg Pde5a Glut\n", + "N_contact_pairs = 1224\n", + "N_noncontact_cell_pairs = 1224\n" + ] + }, + { + "name": "stderr", + "output_type": "stream", + "text": [ + ":89: RuntimeWarning: divide by zero encountered in divide\n", + ":89: RuntimeWarning: invalid value encountered in divide\n", + ":89: RuntimeWarning: divide by zero encountered in divide\n", + ":89: RuntimeWarning: invalid value encountered in divide\n", + ":89: RuntimeWarning: divide by zero encountered in divide\n", + ":89: RuntimeWarning: invalid value encountered in divide\n", + ":89: RuntimeWarning: divide by zero encountered in divide\n", + ":89: RuntimeWarning: invalid value encountered in divide\n" + ] + }, + { + "name": "stdout", + "output_type": "stream", + "text": [ + "N_contact_pairs = 1224\n", + "N_noncontact_cell_pairs = 1224\n", + "SCig Foxb1 Glut SCig Tfap2b Chrnb3 Glut\n", + "N_contact_pairs = 265\n", + "N_noncontact_cell_pairs = 265\n", + "N_contact_pairs = 265\n", + "N_noncontact_cell_pairs = 265\n", + "Astro-NT NN IC Tfap2d Maf Glut\n", + "N_contact_pairs = 25095\n", + "N_noncontact_cell_pairs = 25095\n" + ] + }, + { + "name": "stderr", + "output_type": "stream", + "text": [ + ":89: RuntimeWarning: divide by zero encountered in divide\n", + ":89: RuntimeWarning: invalid value encountered in divide\n" + ] + }, + { + "name": "stdout", + "output_type": "stream", + "text": [ + "N_contact_pairs = 25095\n", + "N_noncontact_cell_pairs = 25095\n" + ] + }, + { + "name": "stderr", + "output_type": "stream", + "text": [ + ":89: RuntimeWarning: divide by zero encountered in divide\n", + ":89: RuntimeWarning: invalid value encountered in divide\n" + ] + }, + { + "name": "stdout", + "output_type": "stream", + "text": [ + "CUN Evx2 Lhx2 Glut PAG-RN Nkx2-2 Otx1 Gaba\n", + "N_contact_pairs = 194\n", + "N_noncontact_cell_pairs = 194\n", + "N_contact_pairs = 194\n", + "N_noncontact_cell_pairs = 194\n", + "PAG Pou4f3 Glut PAG Pou4f3 Glut\n", + "N_contact_pairs = 105\n", + "N_noncontact_cell_pairs = 105\n", + "Astro-NT NN SC Lef1 Otx2 Gaba\n", + "N_contact_pairs = 929\n", + "N_noncontact_cell_pairs = 929\n" + ] + }, + { + "name": "stderr", + "output_type": "stream", + "text": [ + ":89: RuntimeWarning: divide by zero encountered in divide\n", + ":89: RuntimeWarning: invalid value encountered in divide\n", + ":89: RuntimeWarning: divide by zero encountered in divide\n", + ":89: RuntimeWarning: invalid value encountered in divide\n", + ":89: RuntimeWarning: divide by zero encountered in divide\n", + ":89: RuntimeWarning: invalid value encountered in divide\n", + ":89: RuntimeWarning: divide by zero encountered in divide\n", + ":89: RuntimeWarning: invalid value encountered in divide\n", + ":89: RuntimeWarning: divide by zero encountered in divide\n", + ":89: RuntimeWarning: invalid value encountered in divide\n" + ] + }, + { + "name": "stdout", + "output_type": "stream", + "text": [ + "N_contact_pairs = 929\n", + "N_noncontact_cell_pairs = 929\n", + "SC-PAG Lef1 Emx2 Gaba SCs Dmbx1 Gaba\n", + "N_contact_pairs = 386\n", + "N_noncontact_cell_pairs = 386\n", + "N_contact_pairs = 386\n", + "N_noncontact_cell_pairs = 386\n", + "LDT Vsx2 Nkx6-1 Nfib Glut LDT Vsx2 Nkx6-1 Nfib Glut\n", + "N_contact_pairs = 53\n", + "N_noncontact_cell_pairs = 53\n", + "Astro-NT NN IC Six3 En2 Gaba\n" + ] + }, + { + "name": "stderr", + "output_type": "stream", + "text": [ + ":89: RuntimeWarning: divide by zero encountered in divide\n", + ":89: RuntimeWarning: invalid value encountered in divide\n", + ":89: RuntimeWarning: divide by zero encountered in divide\n", + ":89: RuntimeWarning: invalid value encountered in divide\n", + ":89: RuntimeWarning: divide by zero encountered in divide\n", + ":89: RuntimeWarning: invalid value encountered in divide\n" + ] + }, + { + "name": "stdout", + "output_type": "stream", + "text": [ + "N_contact_pairs = 3372\n", + "N_noncontact_cell_pairs = 3372\n" + ] + }, + { + "name": "stderr", + "output_type": "stream", + "text": [ + ":89: RuntimeWarning: divide by zero encountered in divide\n", + ":89: RuntimeWarning: invalid value encountered in divide\n" + ] + }, + { + "name": "stdout", + "output_type": "stream", + "text": [ + "N_contact_pairs = 3372\n", + "N_noncontact_cell_pairs = 3372\n", + "SC Tnnt1 Gli3 Gaba SCs Dmbx1 Gaba\n", + "N_contact_pairs = 386\n", + "N_noncontact_cell_pairs = 386\n" + ] + }, + { + "name": "stderr", + "output_type": "stream", + "text": [ + ":89: RuntimeWarning: divide by zero encountered in divide\n", + ":89: RuntimeWarning: invalid value encountered in divide\n", + ":89: RuntimeWarning: divide by zero encountered in divide\n", + ":89: RuntimeWarning: invalid value encountered in divide\n", + ":89: RuntimeWarning: divide by zero encountered in divide\n", + ":89: RuntimeWarning: invalid value encountered in divide\n" + ] + }, + { + "name": "stdout", + "output_type": "stream", + "text": [ + "N_contact_pairs = 386\n", + "N_noncontact_cell_pairs = 386\n", + "Astro-NT NN PB Evx2 Glut\n", + "N_contact_pairs = 510\n", + "N_noncontact_cell_pairs = 510\n" + ] + }, + { + "name": "stderr", + "output_type": "stream", + "text": [ + ":89: RuntimeWarning: divide by zero encountered in divide\n", + ":89: RuntimeWarning: invalid value encountered in divide\n", + ":89: RuntimeWarning: divide by zero encountered in divide\n", + ":89: RuntimeWarning: invalid value encountered in divide\n" + ] + }, + { + "name": "stdout", + "output_type": "stream", + "text": [ + "N_contact_pairs = 510\n", + "N_noncontact_cell_pairs = 510\n", + "Astro-NT NN SCs Pax7 Nfia Gaba\n", + "N_contact_pairs = 1477\n", + "N_noncontact_cell_pairs = 1477\n", + "N_contact_pairs = 1477\n", + "N_noncontact_cell_pairs = 1477\n" + ] + }, + { + "name": "stderr", + "output_type": "stream", + "text": [ + ":89: RuntimeWarning: divide by zero encountered in divide\n", + ":89: RuntimeWarning: invalid value encountered in divide\n", + ":89: RuntimeWarning: divide by zero encountered in divide\n", + ":89: RuntimeWarning: invalid value encountered in divide\n" + ] + }, + { + "name": "stdout", + "output_type": "stream", + "text": [ + "PAG Pou4f2 Glut PAG Pou4f2 Glut\n", + "N_contact_pairs = 558\n", + "N_noncontact_cell_pairs = 558\n", + "MRN-VTN-PPN Pax5 Cdh23 Gaba PAG-MRN Pou3f1 Glut\n", + "N_contact_pairs = 62\n", + "N_noncontact_cell_pairs = 62\n", + "N_contact_pairs = 62\n", + "N_noncontact_cell_pairs = 62\n", + "CS-PRNr-DR En1 Sox2 Gaba Endo NN\n", + "N_contact_pairs = 183\n", + "N_noncontact_cell_pairs = 183\n" + ] + }, + { + "name": "stderr", + "output_type": "stream", + "text": [ + ":89: RuntimeWarning: divide by zero encountered in divide\n", + ":89: RuntimeWarning: invalid value encountered in divide\n", + ":89: RuntimeWarning: divide by zero encountered in divide\n", + ":89: RuntimeWarning: invalid value encountered in divide\n", + ":89: RuntimeWarning: divide by zero encountered in divide\n", + ":89: RuntimeWarning: invalid value encountered in divide\n", + ":89: RuntimeWarning: divide by zero encountered in divide\n", + ":89: RuntimeWarning: invalid value encountered in divide\n" + ] + }, + { + "name": "stdout", + "output_type": "stream", + "text": [ + "N_contact_pairs = 183\n", + "N_noncontact_cell_pairs = 183\n", + "SC Tnnt1 Gli3 Gaba SCig Tfap2b Chrnb3 Glut\n", + "N_contact_pairs = 97\n", + "N_noncontact_cell_pairs = 97\n", + "N_contact_pairs = 97\n", + "N_noncontact_cell_pairs = 97\n" + ] + }, + { + "name": "stderr", + "output_type": "stream", + "text": [ + ":89: RuntimeWarning: divide by zero encountered in divide\n", + ":89: RuntimeWarning: invalid value encountered in divide\n", + ":89: RuntimeWarning: divide by zero encountered in divide\n", + ":89: RuntimeWarning: invalid value encountered in divide\n", + ":89: RuntimeWarning: divide by zero encountered in divide\n", + ":89: RuntimeWarning: invalid value encountered in divide\n" + ] + }, + { + "name": "stdout", + "output_type": "stream", + "text": [ + "CPU times: user 18min 49s, sys: 4min 16s, total: 23min 6s\n", + "Wall time: 23min 7s\n" + ] + } + ], + "source": [ + "%%time\n", + "output_path = 'lr_interactions'\n", + "os.makedirs(output_path, exist_ok=True)\n", + "cell_by_region_path = '/home/xingjiepan/data/whole_brain/analysis/20230808_cell_cell_contacts/cells_by_regions'\n", + "contact_path = '/home/xingjiepan/data/whole_brain/analysis/20230808_cell_cell_contacts/outputs_30um'\n", + "\n", + "\n", + "major_brain_regions = ['Cerebellum', 'Cortical_subplate', 'Fiber_tracts', 'Hippocampus',\n", + " 'Isocortex', 'Medulla', 'Olfactory', 'Pallidum', 'Pons', 'Striatum',\n", + " 'Thalamus', 'Ventricular_systems', 'anterior_HY', 'anterior_MB',\n", + " 'posterior_HY', 'posterior_MB']\n", + "contact_radius = 30\n", + "\n", + "\n", + "for region in major_brain_regions:\n", + " \n", + " print(region)\n", + " lr_interaction_dict = {'subclass_ligand': [], 'subclass_receptor': [], 'LR_pair': [], 'N_contact_pairs':[],\n", + " 'mean_contact_lr_exp': [], 'exp_fraction': [], 'fold_change': [], 'pval': []}\n", + " \n", + " # Only keep the cells in the region\n", + " region_df = pd.read_csv(os.path.join(cell_by_region_path, f'{region}.csv'), index_col=0)\n", + " cells_in_region = list(region_df.index)\n", + " adata_ligand_region = adata_ligand[adata_ligand.obs.index.isin(cells_in_region)]\n", + " adata_receptor_region = adata_receptor[adata_receptor.obs.index.isin(cells_in_region)]\n", + " adata_ligand_region.obs['slice_id'] = region_df['slice_id']\n", + " adata_ligand_region.obs['center_x'] = region_df['center_x']\n", + " adata_ligand_region.obs['center_y'] = region_df['center_y']\n", + " adata_receptor_region.obs['slice_id'] = region_df['slice_id']\n", + " adata_receptor_region.obs['center_x'] = region_df['center_x']\n", + " adata_receptor_region.obs['center_y'] = region_df['center_y']\n", + " \n", + " # Get the contact pairs\n", + " close_contact_subclass_df = pd.read_csv(os.path.join(contact_path, f'{region}_close_contacts.csv'))\n", + "\n", + " # Calculate the L-R pair enrichment in close-contact cells\n", + " for i in range(close_contact_subclass_df.shape[0]):\n", + " ct1 = close_contact_subclass_df['cell_type1'][i]\n", + " ct2 = close_contact_subclass_df['cell_type2'][i]\n", + " \n", + " print(ct1, ct2)\n", + " \n", + " if ct1 == ct2:\n", + " ct_lr_pairs = [(ct1, ct2)]\n", + " else:\n", + " ct_lr_pairs = [(ct1, ct2), (ct2, ct1)]\n", + " \n", + " # The two cell types can either be ligand or receptors\n", + " for ct_l, ct_r in ct_lr_pairs:\n", + " \n", + " adata_ligand_cells = adata_ligand_region[adata_ligand_region.obs['subclass_label_transfer'] == ct_l]\n", + " adata_receptor_cells = adata_receptor_region[\n", + " adata_receptor_region.obs['subclass_label_transfer'] == ct_r]\n", + " \n", + " # Get the contact cell type pairs\n", + " if ct1 == ct2:\n", + " contact_cell_pairs = get_close_contact_cell_pairs_cis(adata_ligand_cells.obs, contact_radius)\n", + " else:\n", + " contact_cell_pairs = get_close_contact_cell_pairs(adata_ligand_cells.obs, adata_receptor_cells.obs, \n", + " contact_radius)\n", + " \n", + " # Get non-contact cell type pairs\n", + " if ct1 == ct2:\n", + " noncontact_cell_pairs = random_select_non_contact_cell_pairs_cis(adata_ligand_cells.obs, \n", + " contact_cell_pairs)\n", + " else:\n", + " noncontact_cell_pairs = random_select_non_contact_cell_pairs(adata_ligand_cells.obs, \n", + " adata_receptor_cells.obs, contact_cell_pairs)\n", + " \n", + " print('N_contact_pairs =', contact_cell_pairs.shape[0])\n", + " print('N_noncontact_cell_pairs =', noncontact_cell_pairs.shape[0])\n", + " if (contact_cell_pairs.shape[0] < 10) or (noncontact_cell_pairs.shape[0] < 10):\n", + " continue\n", + " \n", + " # Get the expressions of contact and non-contact pairs of cells\n", + " contact_lig_exps = get_expressions_for_cells(adata_ligand_cells, contact_cell_pairs[:, 0])\n", + " contact_rec_exps = get_expressions_for_cells(adata_receptor_cells, contact_cell_pairs[:, 1])\n", + " contact_lr_exps = contact_lig_exps * contact_rec_exps\n", + " contact_lr_exps = np.log(1 + contact_lr_exps)\n", + " \n", + " noncontact_lig_exps = get_expressions_for_cells(adata_ligand_cells, \n", + " noncontact_cell_pairs[:, 0])\n", + " noncontact_rec_exps = get_expressions_for_cells(adata_receptor_cells, \n", + " noncontact_cell_pairs[:, 1])\n", + " noncontact_lr_exps = noncontact_lig_exps * noncontact_rec_exps\n", + " noncontact_lr_exps = np.log(1 + noncontact_lr_exps)\n", + " \n", + " mean_contact_exps = np.mean(contact_lr_exps, axis=0)\n", + " exp_fractions = np.sum(contact_lr_exps > 0, axis=0) / contact_lr_exps.shape[0]\n", + " fold_changes = np.mean(contact_lr_exps, axis=0) / np.mean(noncontact_lr_exps, axis=0)\n", + " pvals = scipy.stats.ttest_ind(contact_lr_exps, noncontact_lr_exps, \n", + " equal_var=False, axis=0, alternative='greater')[1]\n", + " \n", + " for i, lr_pair in enumerate(lr_pairs):\n", + " # Do not double count the symmetric LR pairs\n", + " if (lr_pair in symmetric_lr_pairs) and (ct_l == ct2):\n", + " continue\n", + "\n", + " # Record the results\n", + " lr_interaction_dict['subclass_ligand'].append(ct_l)\n", + " lr_interaction_dict['subclass_receptor'].append(ct_r)\n", + " lr_interaction_dict['LR_pair'].append(lr_pair)\n", + " lr_interaction_dict['N_contact_pairs'].append(len(contact_cell_pairs))\n", + " lr_interaction_dict['mean_contact_lr_exp'].append(mean_contact_exps[i])\n", + " lr_interaction_dict['exp_fraction'].append(exp_fractions[i])\n", + " lr_interaction_dict['fold_change'].append(fold_changes[i])\n", + " lr_interaction_dict['pval'].append(pvals[i])\n", + "\n", + " lr_interaction_df = pd.DataFrame(lr_interaction_dict)\n", + " lr_interaction_df = lr_interaction_df[~np.isnan(lr_interaction_df['pval'])]\n", + "\n", + " lr_interaction_df['pval_adjusted'] = statsmodels.stats.multitest.multipletests(\n", + " lr_interaction_df['pval'], method='fdr_bh')[1]\n", + " lr_interaction_df.to_csv(os.path.join(output_path, f'{region}_LR_interactions_before_filter.csv'))\n", + " \n", + " \n", + " mask = lr_interaction_df['pval_adjusted'] < 0.01\n", + " mask = mask & (lr_interaction_df['fold_change'] > 2)\n", + " mask = mask & (lr_interaction_df['exp_fraction'] > 0.4)\n", + "\n", + " lr_interaction_df_filtered = lr_interaction_df[mask].sort_values(['pval_adjusted', 'fold_change'], \n", + " ascending=[True, False])\n", + " lr_interaction_df_filtered.to_csv(os.path.join(output_path, f'{region}_LR_interactions.csv'))\n", + " " + ] + }, + { + "cell_type": "code", + "execution_count": 5, + "id": "d1275cda", + "metadata": {}, + "outputs": [], + "source": [ + "major_brain_regions = ['Cerebellum', 'Cortical_subplate', 'Fiber_tracts', 'Hippocampus',\n", + " 'Isocortex', 'Medulla', 'Olfactory', 'Pallidum', 'Pons', 'Striatum',\n", + " 'Thalamus', 'Ventricular_systems', 'anterior_HY', 'anterior_MB',\n", + " 'posterior_HY', 'posterior_MB']\n", + "\n", + "all_lr_df_list = [pd.read_csv(os.path.join('lr_interactions', f'{region}_LR_interactions.csv'), index_col=0)\n", + " for region in major_brain_regions]\n", + "all_lr_df = pd.concat(all_lr_df_list)" + ] + }, + { + "cell_type": "code", + "execution_count": 6, + "id": "d3e6da55", + "metadata": {}, + "outputs": [], + "source": [ + "import json\n", + "allowed_pairs_by_regions = {}\n", + "for r in major_brain_regions:\n", + " df = pd.read_csv(os.path.join('lr_interactions', f'{r}_LR_interactions.csv'), index_col=0)\n", + " df = df[df['pval_adjusted'] < 0.01]\n", + " allowed_pairs_by_regions[r] = list(set([tuple(sorted(p)) \n", + " for p in df[['subclass_ligand', 'subclass_receptor']].values]))\n", + " \n", + "with open('allowed_pairs_by_regions.json', 'w') as f:\n", + " json.dump(allowed_pairs_by_regions, f)" + ] + }, + { + "cell_type": "code", + "execution_count": 20, + "id": "69fda10a", + "metadata": { + "scrolled": false + }, + "outputs": [ + { + "data": { + "text/html": [ + "
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subclass_ligandsubclass_receptorLR_pairN_contact_pairsmean_contact_lr_expexp_fractionfold_changepvalpval_adjusted
76422Oligo NNMicroglia NNPSAP_GPR3733550.0934480.4149033.4541680.000000e+000.000000e+00
76967Oligo NNMicroglia NNCNTN2_CNTN2_CNTNAP233550.0926270.5648292.1805252.492733e-379.778891e-36
77251Oligo NNMicroglia NNITGA4_ITGB1_VCAM133550.0531630.7523102.1588761.203294e-253.709455e-24
76342Oligo NNMicroglia NNSEMA3C_NRP1_PLXNA233550.0034330.4336812.0482516.849769e-091.100999e-07
76346Oligo NNMicroglia NNSEMA3D_NRP1_PLXNA233550.0064220.4223552.1073687.881533e-058.261768e-04
60550Oligo NNMicroglia NNPSAP_GPR37389730.1134550.4308112.1955340.000000e+000.000000e+00
126570Oligo NNMicroglia NNEFNB3_EPHB19380.2340160.5511732.2065481.417882e-175.275675e-16
126771Oligo NNMicroglia NNSEMA4D_PLXNB39380.1421100.6417912.0838961.521596e-134.736404e-12
125967Oligo NNMicroglia NNPSAP_GPR379380.1181430.4477612.2998287.452641e-132.233656e-11
126780Oligo NNMicroglia NNSEMA5A_PLXNB39380.0440930.6098082.6270912.444609e-043.196736e-03
\n", + "
" + ], + "text/plain": [ + " subclass_ligand subclass_receptor LR_pair \\\n", + "76422 Oligo NN Microglia NN PSAP_GPR37 \n", + "76967 Oligo NN Microglia NN CNTN2_CNTN2_CNTNAP2 \n", + "77251 Oligo NN Microglia NN ITGA4_ITGB1_VCAM1 \n", + "76342 Oligo NN Microglia NN SEMA3C_NRP1_PLXNA2 \n", + "76346 Oligo NN Microglia NN SEMA3D_NRP1_PLXNA2 \n", + "60550 Oligo NN Microglia NN PSAP_GPR37 \n", + "126570 Oligo NN Microglia NN EFNB3_EPHB1 \n", + "126771 Oligo NN Microglia NN SEMA4D_PLXNB3 \n", + "125967 Oligo NN Microglia NN PSAP_GPR37 \n", + "126780 Oligo NN Microglia NN SEMA5A_PLXNB3 \n", + "\n", + " N_contact_pairs mean_contact_lr_exp exp_fraction fold_change \\\n", + "76422 3355 0.093448 0.414903 3.454168 \n", + "76967 3355 0.092627 0.564829 2.180525 \n", + "77251 3355 0.053163 0.752310 2.158876 \n", + "76342 3355 0.003433 0.433681 2.048251 \n", + "76346 3355 0.006422 0.422355 2.107368 \n", + "60550 38973 0.113455 0.430811 2.195534 \n", + "126570 938 0.234016 0.551173 2.206548 \n", + "126771 938 0.142110 0.641791 2.083896 \n", + "125967 938 0.118143 0.447761 2.299828 \n", + "126780 938 0.044093 0.609808 2.627091 \n", + "\n", + " pval pval_adjusted \n", + "76422 0.000000e+00 0.000000e+00 \n", + "76967 2.492733e-37 9.778891e-36 \n", + "77251 1.203294e-25 3.709455e-24 \n", + "76342 6.849769e-09 1.100999e-07 \n", + "76346 7.881533e-05 8.261768e-04 \n", + "60550 0.000000e+00 0.000000e+00 \n", + "126570 1.417882e-17 5.275675e-16 \n", + "126771 1.521596e-13 4.736404e-12 \n", + "125967 7.452641e-13 2.233656e-11 \n", + "126780 2.444609e-04 3.196736e-03 " + ] + }, + "execution_count": 20, + "metadata": {}, + "output_type": "execute_result" + } + ], + "source": [ + "#ct1, ct2 = 'BAM NN', 'Endo NN'\n", + "#ct1, ct2 = 'Oligo NN', 'Microglia NN'\n", + "#ct1, ct2 = 'Astro-OLF NN', 'MOB-STR-CTX Inh IMN'\n", + "#ct1, ct2 = 'Astro-TE NN', 'MOB-STR-CTX Inh IMN'\n", + "#ct1, ct2 = 'OB Meis2 Gaba', 'OB-out Frmd7 Gaba'\n", + "#ct1, ct2 = 'CHOR NN', 'Astro-Epen NN'\n", + "#ct1, ct2 = 'SCs Dmbx1 Gaba', 'SCig Foxb1 Glut'\n", + "#ct1, ct2 = 'SCs Dmbx1 Gaba', 'SCs Lef1 Gli3 Gaba'\n", + "#ct1, ct2 = 'Endo NN', 'SMC NN'\n", + "#ct1, ct2 = 'Astro-NT NN', 'PG-TRN-LRN Fat2 Glut'\n", + "#ct1, ct2 = 'Astro-Epen NN', 'HPF CR Glut'\n", + "#ct1, ct2 = 'Microglia NN', 'Oligo NN'\n", + "\n", + "\n", + "#all_lr_df[((all_lr_df['subclass_ligand'] == ct1) & (all_lr_df['subclass_receptor'] == ct2))\n", + "# |((all_lr_df['subclass_ligand'] == ct2) & (all_lr_df['subclass_receptor'] == ct1))]\n", + "\n", + "all_lr_df[(all_lr_df['subclass_ligand'] == ct1) & (all_lr_df['subclass_receptor'] == ct2)]" + ] + }, + { + "cell_type": "code", + "execution_count": 8, + "id": "ab8fd79b", + "metadata": {}, + "outputs": [ + { + "data": { + "text/plain": [ + "651" + ] + }, + "execution_count": 8, + "metadata": {}, + "output_type": "execute_result" + } + ], + "source": [ + "pair_set = set([tuple(sorted(p)) for p in all_lr_df[['subclass_ligand', 'subclass_receptor']].values])\n", + "len(pair_set)" + ] + }, + { + "cell_type": "code", + "execution_count": 9, + "id": "b82c6f8a", + "metadata": {}, + "outputs": [ + { + "data": { + "text/plain": [ + "{('ABC NN', 'ABC NN'),\n", + " ('ABC NN', 'Astro-TE NN'),\n", + " ('ABC NN', 'BAM NN'),\n", + " ('ABC NN', 'Endo NN'),\n", + " ('ABC NN', 'Ependymal NN'),\n", + " ('ABC NN', 'Lymphoid NN'),\n", + " ('ABC NN', 'Microglia NN'),\n", + " ('ABC NN', 'OEC NN'),\n", + " ('ABC NN', 'Peri NN'),\n", + " ('ABC NN', 'SMC NN'),\n", + " ('ABC NN', 'VLMC NN'),\n", + " ('ACB-BST-FS D1 Gaba', 'ACB-BST-FS D1 Gaba'),\n", + " ('ACB-BST-FS D1 Gaba', 'CEA-AAA-BST Six3 Sp9 Gaba'),\n", + " ('ACB-BST-FS D1 Gaba', 'Microglia NN'),\n", + " ('AD Serpinb7 Glut', 'AD Serpinb7 Glut'),\n", + " ('AD Serpinb7 Glut', 'Astro-NT NN'),\n", + " ('AD Serpinb7 Glut', 'Endo NN'),\n", + " ('ADP-MPO Trp73 Glut', 'ADP-MPO Trp73 Glut'),\n", + " ('AHN Onecut3 Gaba', 'AHN Onecut3 Gaba'),\n", + " ('AHN-RCH-LHA Otp Fezf1 Glut', 'AHN-RCH-LHA Otp Fezf1 Glut'),\n", + " ('AHN-SBPV-PVHd Pdrm12 Gaba', 'AHN-SBPV-PVHd Pdrm12 Gaba'),\n", + " ('APN C1ql4 Glut', 'APN C1ql4 Glut'),\n", + " ('ARH-PVp Tbx3 Gaba', 'ARH-PVp Tbx3 Gaba'),\n", + " ('ARH-PVp Tbx3 Gaba', 'Endo NN'),\n", + " ('ARH-PVp Tbx3 Gaba', 'TU-ARH Otp Six6 Gaba'),\n", + " ('ARH-PVp Tbx3 Glut', 'ARH-PVp Tbx3 Glut'),\n", + " ('ARH-PVp Tbx3 Glut', 'DMH-LHA Gsx1 Gaba'),\n", + " ('ARH-PVp Tbx3 Glut', 'Endo NN'),\n", + " ('ARH-PVp Tbx3 Glut', 'Microglia NN'),\n", + " ('AV Col27a1 Glut', 'AV Col27a1 Glut'),\n", + " ('AVPV-MEPO-SFO Tbr1 Glut', 'AVPV-MEPO-SFO Tbr1 Glut'),\n", + " ('AVPV-MEPO-SFO Tbr1 Glut', 'Astro-NT NN'),\n", + " ('AVPV-MEPO-SFO Tbr1 Glut', 'PVR Six3 Sox3 Gaba'),\n", + " ('AVPV-MEPO-SFO Tbr1 Glut', 'Tanycyte NN'),\n", + " ('Astro-CB NN', 'Bergmann NN'),\n", + " ('Astro-CB NN', 'CB Granule Glut'),\n", + " ('Astro-CB NN', 'CB PLI Gly-Gaba'),\n", + " ('Astro-CB NN', 'CBX Golgi Gly-Gaba'),\n", + " ('Astro-CB NN', 'CBX Purkinje Gaba'),\n", + " ('Astro-CB NN', 'Endo NN'),\n", + " ('Astro-CB NN', 'Microglia NN'),\n", + " ('Astro-CB NN', 'OEC NN'),\n", + " ('Astro-CB NN', 'OPC NN'),\n", + " ('Astro-CB NN', 'Oligo NN'),\n", + " ('Astro-CB NN', 'Peri NN'),\n", + " ('Astro-CB NN', 'VLMC NN'),\n", + " ('Astro-NT NN', 'Astro-NT NN'),\n", + " ('Astro-NT NN', 'BAM NN'),\n", + " ('Astro-NT NN', 'DCO Il22 Gly-Gaba'),\n", + " ('Astro-NT NN', 'DCO UBC Glut'),\n", + " ('Astro-NT NN', 'Endo NN'),\n", + " ('Astro-NT NN', 'Ependymal NN'),\n", + " ('Astro-NT NN', 'IC Tfap2d Maf Glut'),\n", + " ('Astro-NT NN', 'LDT-PCG St18 Gaba'),\n", + " ('Astro-NT NN', 'LGv-SPFp-SPFm Nkx2-2 Tcf7l2 Gaba'),\n", + " ('Astro-NT NN', 'LH Pou4f1 Sox1 Glut'),\n", + " ('Astro-NT NN', 'LSX Otx2 Gaba'),\n", + " ('Astro-NT NN', 'MEA-BST Lhx6 Nr2e1 Gaba'),\n", + " ('Astro-NT NN', 'MM Foxb1 Glut'),\n", + " ('Astro-NT NN', 'MM-ant Foxb1 Glut'),\n", + " ('Astro-NT NN', 'MPO-ADP Lhx8 Gaba'),\n", + " ('Astro-NT NN', 'MS-SF Bsx Glut'),\n", + " ('Astro-NT NN', 'MV Nkx6-1 Gly-Gaba'),\n", + " ('Astro-NT NN', 'Microglia NN'),\n", + " ('Astro-NT NN', 'NDB-SI-MA-STRv Lhx8 Gaba'),\n", + " ('Astro-NT NN', 'NLL Gata3 Gly-Gaba'),\n", + " ('Astro-NT NN', 'NTS Dbh Glut'),\n", + " ('Astro-NT NN', 'OPC NN'),\n", + " ('Astro-NT NN', 'Oligo NN'),\n", + " ('Astro-NT NN', 'PAS-MV Ebf2 Gly-Gaba'),\n", + " ('Astro-NT NN', 'PB Evx2 Glut'),\n", + " ('Astro-NT NN', 'PB Sst Gly-Gaba'),\n", + " ('Astro-NT NN', 'PB-PSV Phox2b Glut'),\n", + " ('Astro-NT NN', 'PG-TRN-LRN Fat2 Glut'),\n", + " ('Astro-NT NN', 'PH Pitx2 Glut'),\n", + " ('Astro-NT NN', 'PH-an Pitx2 Glut'),\n", + " ('Astro-NT NN', 'PRC-PAG Tcf7l2 Irx2 Glut'),\n", + " ('Astro-NT NN', 'PRP Otp Gly-Gaba'),\n", + " ('Astro-NT NN', 'PSV Lmx1a Trpv6 Glut'),\n", + " ('Astro-NT NN', 'PVR Six3 Sox3 Gaba'),\n", + " ('Astro-NT NN', 'PVT-PT Ntrk1 Glut'),\n", + " ('Astro-NT NN', 'Peri NN'),\n", + " ('Astro-NT NN', 'RPA Pax6 Hoxb5 Gly-Gaba'),\n", + " ('Astro-NT NN', 'RT-ZI Gnb3 Gaba'),\n", + " ('Astro-NT NN', 'SC Lef1 Otx2 Gaba'),\n", + " ('Astro-NT NN', 'SCH Six6 Cdc14a Gaba'),\n", + " ('Astro-NT NN', 'SCs Dmbx1 Gaba'),\n", + " ('Astro-NT NN', 'SCsg Gabrr2 Gaba'),\n", + " ('Astro-NT NN', 'SCsg Pde5a Glut'),\n", + " ('Astro-NT NN', 'SI-MPO-LPO Lhx8 Gaba'),\n", + " ('Astro-NT NN', 'SMC NN'),\n", + " ('Astro-NT NN', 'SPA-SPFm-SPFp-POL-PIL-PoT Sp9 Glut'),\n", + " ('Astro-NT NN', 'TRS-BAC Sln Glut'),\n", + " ('Astro-NT NN', 'Tanycyte NN'),\n", + " ('Astro-NT NN', 'VCO Mafa Meis2 Glut'),\n", + " ('Astro-NT NN', 'VLMC NN'),\n", + " ('Astro-NT NN', 'ZI Pax6 Gaba'),\n", + " ('Astro-OLF NN', 'Astro-OLF NN'),\n", + " ('Astro-OLF NN', 'Endo NN'),\n", + " ('Astro-OLF NN', 'Microglia NN'),\n", + " ('Astro-OLF NN', 'OB Dopa-Gaba'),\n", + " ('Astro-OLF NN', 'OB Eomes Ms4a15 Glut'),\n", + " ('Astro-OLF NN', 'OB Meis2 Thsd7b Gaba'),\n", + " ('Astro-OLF NN', 'OB-STR-CTX Inh IMN'),\n", + " ('Astro-OLF NN', 'OB-out Frmd7 Gaba'),\n", + " ('Astro-OLF NN', 'Oligo NN'),\n", + " ('Astro-OLF NN', 'Peri NN'),\n", + " ('Astro-OLF NN', 'SMC NN'),\n", + " ('Astro-TE NN', 'Astro-TE NN'),\n", + " ('Astro-TE NN', 'Astroependymal NN'),\n", + " ('Astro-TE NN', 'BAM NN'),\n", + " ('Astro-TE NN', 'CLA-EPd-CTX Car3 Glut'),\n", + " ('Astro-TE NN', 'DC NN'),\n", + " ('Astro-TE NN', 'DG-PIR Ex IMN'),\n", + " ('Astro-TE NN', 'ENTmv-PA-COAp Glut'),\n", + " ('Astro-TE NN', 'Endo NN'),\n", + " ('Astro-TE NN', 'Ependymal NN'),\n", + " ('Astro-TE NN', 'HPF CR Glut'),\n", + " ('Astro-TE NN', 'MEA Slc17a7 Glut'),\n", + " ('Astro-TE NN', 'Microglia NN'),\n", + " ('Astro-TE NN', 'OB-STR-CTX Inh IMN'),\n", + " ('Astro-TE NN', 'OEC NN'),\n", + " ('Astro-TE NN', 'Oligo NN'),\n", + " ('Astro-TE NN', 'Peri NN'),\n", + " ('Astro-TE NN', 'RHP-COA Ndnf Gaba'),\n", + " ('Astro-TE NN', 'SI-MA-ACB Ebf1 Bnc2 Gaba'),\n", + " ('Astro-TE NN', 'SMC NN'),\n", + " ('Astro-TE NN', 'STR D1 Sema5a Gaba'),\n", + " ('Astro-TE NN', 'STR-PAL Chst9 Gaba'),\n", + " ('Astro-TE NN', 'Sst Gaba'),\n", + " ('Astro-TE NN', 'TRS-BAC Sln Glut'),\n", + " ('Astro-TE NN', 'VLMC NN'),\n", + " ('Astroependymal NN', 'Astroependymal NN'),\n", + " ('Astroependymal NN', 'Endo NN'),\n", + " ('Astroependymal NN', 'Ependymal NN'),\n", + " ('Astroependymal NN', 'MH Tac2 Glut'),\n", + " ('Astroependymal NN', 'NTS-PARN Neurod2 Gly-Gaba'),\n", + " ('Astroependymal NN', 'Oligo NN'),\n", + " ('Astroependymal NN', 'VLMC NN'),\n", + " ('B-PB Nr4a2 Glut', 'B-PB Nr4a2 Glut'),\n", + " ('BAM NN', 'CHOR NN'),\n", + " ('BAM NN', 'Endo NN'),\n", + " ('BAM NN', 'Ependymal NN'),\n", + " ('BAM NN', 'Lymphoid NN'),\n", + " ('BAM NN', 'Microglia NN'),\n", + " ('BAM NN', 'OB-STR-CTX Inh IMN'),\n", + " ('BAM NN', 'OEC NN'),\n", + " ('BAM NN', 'Oligo NN'),\n", + " ('BAM NN', 'Peri NN'),\n", + " ('BAM NN', 'SMC NN'),\n", + " ('BAM NN', 'VLMC NN'),\n", + " ('BST-MPN Six3 Nrgn Gaba', 'BST-MPN Six3 Nrgn Gaba'),\n", + " ('BST-po Iigp1 Glut', 'BST-po Iigp1 Glut'),\n", + " ('BST-po Iigp1 Glut', 'OPC NN'),\n", + " ('Bergmann NN', 'Bergmann NN'),\n", + " ('Bergmann NN', 'CB Granule Glut'),\n", + " ('Bergmann NN', 'CB PLI Gly-Gaba'),\n", + " ('Bergmann NN', 'CBX Golgi Gly-Gaba'),\n", + " ('Bergmann NN', 'CBX MLI Megf11 Gaba'),\n", + " ('Bergmann NN', 'CBX Purkinje Gaba'),\n", + " ('Bergmann NN', 'Endo NN'),\n", + " ('Bergmann NN', 'Peri NN'),\n", + " ('CA1-ProS Glut', 'CA1-ProS Glut'),\n", + " ('CA1-ProS Glut', 'CA2-FC-IG Glut'),\n", + " ('CA1-ProS Glut', 'DG-PIR Ex IMN'),\n", + " ('CA1-ProS Glut', 'Lamp5 Lhx6 Gaba'),\n", + " ('CA1-ProS Glut', 'Pvalb chandelier Gaba'),\n", + " ('CA2-FC-IG Glut', 'CA2-FC-IG Glut'),\n", + " ('CA2-FC-IG Glut', 'CA3 Glut'),\n", + " ('CA2-FC-IG Glut', 'Lamp5 Lhx6 Gaba'),\n", + " ('CA2-FC-IG Glut', 'Pvalb chandelier Gaba'),\n", + " ('CA2-FC-IG Glut', 'Sst Gaba'),\n", + " ('CA3 Glut', 'CA3 Glut'),\n", + " ('CA3 Glut', 'Lamp5 Lhx6 Gaba'),\n", + " ('CA3 Glut', 'Pvalb chandelier Gaba'),\n", + " ('CB Granule Glut', 'CB PLI Gly-Gaba'),\n", + " ('CB Granule Glut', 'CBX Golgi Gly-Gaba'),\n", + " ('CB Granule Glut', 'CBX Purkinje Gaba'),\n", + " ('CB Granule Glut', 'DCO Il22 Gly-Gaba'),\n", + " ('CB Granule Glut', 'DCO UBC Glut'),\n", + " ('CB PLI Gly-Gaba', 'Oligo NN'),\n", + " ('CBN Dmbx1 Gaba', 'Endo NN'),\n", + " ('CBN Dmbx1 Gaba', 'OPC NN'),\n", + " ('CBN Dmbx1 Gaba', 'Oligo NN'),\n", + " ('CBN Dmbx1 Gaba', 'Peri NN'),\n", + " ('CBN Neurod2 Pvalb Glut', 'Endo NN'),\n", + " ('CBN Neurod2 Pvalb Glut', 'Oligo NN'),\n", + " ('CBX Golgi Gly-Gaba', 'CBX Purkinje Gaba'),\n", + " ('CBX MLI Cdh22 Gaba', 'DCO UBC Glut'),\n", + " ('CBX MLI Cdh22 Gaba', 'Microglia NN'),\n", + " ('CBX MLI Megf11 Gaba', 'DCO UBC Glut'),\n", + " ('CBX MLI Megf11 Gaba', 'Microglia NN'),\n", + " ('CBX Purkinje Gaba', 'Endo NN'),\n", + " ('CBX Purkinje Gaba', 'Peri NN'),\n", + " ('CEA-AAA-BST Six3 Sp9 Gaba', 'CEA-AAA-BST Six3 Sp9 Gaba'),\n", + " ('CEA-BST Ebf1 Pdyn Gaba', 'CEA-BST Ebf1 Pdyn Gaba'),\n", + " ('CEA-BST Ebf1 Pdyn Gaba', 'CEA-BST Six3 Cyp26b1 Gaba'),\n", + " ('CEA-BST Rai14 Pdyn Crh Gaba', 'CEA-BST Rai14 Pdyn Crh Gaba'),\n", + " ('CEA-BST Six3 Cyp26b1 Gaba', 'CEA-BST Six3 Cyp26b1 Gaba'),\n", + " ('CHOR NN', 'CHOR NN'),\n", + " ('CHOR NN', 'Endo NN'),\n", + " ('CHOR NN', 'Ependymal NN'),\n", + " ('CHOR NN', 'Lymphoid NN'),\n", + " ('CHOR NN', 'Microglia NN'),\n", + " ('CHOR NN', 'Peri NN'),\n", + " ('CHOR NN', 'SMC NN'),\n", + " ('CHOR NN', 'VLMC NN'),\n", + " ('CLA-EPd-CTX Car3 Glut', 'CLA-EPd-CTX Car3 Glut'),\n", + " ('CLA-EPd-CTX Car3 Glut', 'Endo NN'),\n", + " ('CLA-EPd-CTX Car3 Glut', 'L2/3 IT RSP Glut'),\n", + " ('CLA-EPd-CTX Car3 Glut', 'Microglia NN'),\n", + " ('CLA-EPd-CTX Car3 Glut', 'OPC NN'),\n", + " ('CLA-EPd-CTX Car3 Glut', 'Oligo NN'),\n", + " ('CM-IAD-CL-PCN Sema5b Glut', 'CM-IAD-CL-PCN Sema5b Glut'),\n", + " ('COAa-PAA-MEA Barhl2 Glut', 'COAa-PAA-MEA Barhl2 Glut'),\n", + " ('COAa-PAA-MEA Barhl2 Glut', 'Oligo NN'),\n", + " ('COAp Grxcr2 Glut', 'COAp Grxcr2 Glut'),\n", + " ('COAp Grxcr2 Glut', 'Microglia NN'),\n", + " ('CS-PRNr-DR En1 Sox2 Gaba', 'CS-PRNr-DR En1 Sox2 Gaba'),\n", + " ('CS-PRNr-DR En1 Sox2 Gaba', 'Endo NN'),\n", + " ('CS-PRNr-DR En1 Sox2 Gaba', 'Oligo NN'),\n", + " ('CS-PRNr-DR En1 Sox2 Gaba', 'PB Evx2 Glut'),\n", + " ('CS-PRNr-PCG Tmem163 Otp Gaba', 'CS-PRNr-PCG Tmem163 Otp Gaba'),\n", + " ('CS-PRNr-PCG Tmem163 Otp Gaba', 'PCG-PRNr Vsx2 Nkx6-1 Glut'),\n", + " ('CS-RPO Meis2 Gaba', 'CS-RPO Meis2 Gaba'),\n", + " ('CS-RPO Meis2 Gaba', 'PRNc-NI-SG-RPO Vsx2 Nr4a2 Glut'),\n", + " ('CS-RPO Meis2 Gaba', 'Peri NN'),\n", + " ('CT SUB Glut', 'CT SUB Glut'),\n", + " ('CT SUB Glut', 'NP SUB Glut'),\n", + " ('CT SUB Glut', 'Oligo NN'),\n", + " ('CT SUB Glut', 'VLMC NN'),\n", + " ('CU-ECU-SPVI Foxb1 Glut', 'CU-ECU-SPVI Foxb1 Glut'),\n", + " ('CUN Evx2 Lhx2 Glut', 'CUN Evx2 Lhx2 Glut'),\n", + " ('CUN Evx2 Lhx2 Glut', 'PAG-RN Nkx2-2 Otx1 Gaba'),\n", + " ('CUN-PPN Evx2 Meis2 Glut', 'CUN-PPN Evx2 Meis2 Glut'),\n", + " ('DC NN', 'Endo NN'),\n", + " ('DC NN', 'OEC NN'),\n", + " ('DC NN', 'SMC NN'),\n", + " ('DC NN', 'VLMC NN'),\n", + " ('DCO Il22 Gly-Gaba', 'DCO Il22 Gly-Gaba'),\n", + " ('DCO Il22 Gly-Gaba', 'DCO UBC Glut'),\n", + " ('DCO Il22 Gly-Gaba', 'Endo NN'),\n", + " ('DCO Il22 Gly-Gaba', 'Oligo NN'),\n", + " ('DCO Il22 Gly-Gaba', 'VCO Mafa Meis2 Glut'),\n", + " ('DCO UBC Glut', 'DCO UBC Glut'),\n", + " ('DCO UBC Glut', 'Endo NN'),\n", + " ('DCO UBC Glut', 'Ependymal NN'),\n", + " ('DCO UBC Glut', 'OPC NN'),\n", + " ('DCO UBC Glut', 'Oligo NN'),\n", + " ('DG Glut', 'DG-PIR Ex IMN'),\n", + " ('DG-PIR Ex IMN', 'Lamp5 Lhx6 Gaba'),\n", + " ('DG-PIR Ex IMN', 'Microglia NN'),\n", + " ('DG-PIR Ex IMN', 'Oligo NN'),\n", + " ('DG-PIR Ex IMN', 'Peri NN'),\n", + " ('DG-PIR Ex IMN', 'RHP-COA Ndnf Gaba'),\n", + " ('DMH Hmx2 Gaba', 'DMH Hmx2 Gaba'),\n", + " ('DMH Hmx2 Glut', 'DMH Hmx2 Glut'),\n", + " ('DMH Nkx2-4 Glut', 'DMH Nkx2-4 Glut'),\n", + " ('DMH Nkx2-4 Glut', 'TMd-DMH Foxd2 Gaba'),\n", + " ('DMH-LHA Gsx1 Gaba', 'DMH-LHA Gsx1 Gaba'),\n", + " ('DMX VII Tbx20 Chol', 'DMX VII Tbx20 Chol'),\n", + " ('DTN-LDT-IPN Otp Pax3 Gaba', 'DTN-LDT-IPN Otp Pax3 Gaba'),\n", + " ('DTN-LDT-IPN Otp Pax3 Gaba', 'IPN Otp Crisp1 Gaba'),\n", + " ('ENTmv-PA-COAp Glut', 'ENTmv-PA-COAp Glut'),\n", + " ('ENTmv-PA-COAp Glut', 'Lamp5 Lhx6 Gaba'),\n", + " ('ENTmv-PA-COAp Glut', 'Microglia NN'),\n", + " ('ENTmv-PA-COAp Glut', 'OPC NN'),\n", + " ('ENTmv-PA-COAp Glut', 'Sst Gaba'),\n", + " ('Endo NN', 'Endo NN'),\n", + " ('Endo NN', 'HPF CR Glut'),\n", + " ('Endo NN', 'IA Mgp Gaba'),\n", + " ('Endo NN', 'IO Fgl2 Glut'),\n", + " ('Endo NN', 'LDT-PCG-CS Gata3 Lhx1 Gaba'),\n", + " ('Endo NN', 'LH Pou4f1 Sox1 Glut'),\n", + " ('Endo NN', 'LSX Otx2 Gaba'),\n", + " ('Endo NN', 'Lymphoid NN'),\n", + " ('Endo NN', 'MEA-COA-BMA Ccdc42 Glut'),\n", + " ('Endo NN', 'MH Tac2 Glut'),\n", + " ('Endo NN', 'MM Foxb1 Glut'),\n", + " ('Endo NN', 'Microglia NN'),\n", + " ('Endo NN', 'NDB-SI-ant Prdm12 Gaba'),\n", + " ('Endo NN', 'NLL Gata3 Gly-Gaba'),\n", + " ('Endo NN', 'NLL-SOC Spp1 Glut'),\n", + " ('Endo NN', 'OB-STR-CTX Inh IMN'),\n", + " ('Endo NN', 'OEC NN'),\n", + " ('Endo NN', 'OPC NN'),\n", + " ('Endo NN', 'Oligo NN'),\n", + " ('Endo NN', 'PAS-MV Ebf2 Gly-Gaba'),\n", + " ('Endo NN', 'PG-TRN-LRN Fat2 Glut'),\n", + " ('Endo NN', 'PH-LHA Foxb1 Glut'),\n", + " ('Endo NN', 'PVH-SO-PVa Otp Glut'),\n", + " ('Endo NN', 'Peri NN'),\n", + " ('Endo NN', 'Pineal Crx Glut'),\n", + " ('Endo NN', 'SCsg Pde5a Glut'),\n", + " ('Endo NN', 'SI-MA-LPO-LHA Skor1 Glut'),\n", + " ('Endo NN', 'SMC NN'),\n", + " ('Endo NN', 'SPVI-SPVC Sall3 Lhx1 Gly-Gaba'),\n", + " ('Endo NN', 'TRS-BAC Sln Glut'),\n", + " ('Endo NN', 'Tanycyte NN'),\n", + " ('Endo NN', 'VCO Mafa Meis2 Glut'),\n", + " ('Endo NN', 'VLMC NN'),\n", + " ('Endo NN', 'ZI Pax6 Gaba'),\n", + " ('Ependymal NN', 'Ependymal NN'),\n", + " ('Ependymal NN', 'Hypendymal NN'),\n", + " ('Ependymal NN', 'MEA-BST Sox6 Gaba'),\n", + " ('Ependymal NN', 'MH Tac2 Glut'),\n", + " ('Ependymal NN', 'Microglia NN'),\n", + " ('Ependymal NN', 'OB-STR-CTX Inh IMN'),\n", + " ('Ependymal NN', 'Oligo NN'),\n", + " ('Ependymal NN', 'Peri NN'),\n", + " ('Ependymal NN', 'Pineal Crx Glut'),\n", + " ('Ependymal NN', 'SNc-VTA-RAmb Foxa1 Dopa'),\n", + " ('Ependymal NN', 'TU-ARH Otp Six6 Gaba'),\n", + " ('Ependymal NN', 'Tanycyte NN'),\n", + " ('Ependymal NN', 'VLMC NN'),\n", + " ('GPe-SI Sox6 Cyp26b1 Gaba', 'GPe-SI Sox6 Cyp26b1 Gaba'),\n", + " ('GPe-SI Sox6 Cyp26b1 Gaba', 'Oligo NN'),\n", + " ('HB Calcb Chol', 'HB Calcb Chol'),\n", + " ('HPF CR Glut', 'Microglia NN'),\n", + " ('Hypendymal NN', 'Hypendymal NN'),\n", + " ('IA Mgp Gaba', 'OB Trdn Gaba'),\n", + " ('IA Mgp Gaba', 'OB-in Frmd7 Gaba'),\n", + " ('IA Mgp Gaba', 'Oligo NN'),\n", + " ('IC Six3 En2 Gaba', 'IC Six3 En2 Gaba'),\n", + " ('IC Tfap2d Maf Glut', 'IC Tfap2d Maf Glut'),\n", + " ('IC Tfap2d Maf Glut', 'SCsg Gabrr2 Gaba'),\n", + " ('IF-RL-CLI-PAG Foxa1 Glut', 'IF-RL-CLI-PAG Foxa1 Glut'),\n", + " ('IO Fgl2 Glut', 'IO Fgl2 Glut'),\n", + " ('IO Fgl2 Glut', 'Peri NN'),\n", + " ('IPN Otp Crisp1 Gaba', 'IPN Otp Crisp1 Gaba'),\n", + " ('IPN-LDT Vsx2 Nkx6-1 Glut', 'IPN-LDT Vsx2 Nkx6-1 Glut'),\n", + " ('IT AON-TT-DP Glut', 'IT AON-TT-DP Glut'),\n", + " ('IT EP-CLA Glut', 'IT EP-CLA Glut'),\n", + " ('IT EP-CLA Glut', 'Lamp5 Lhx6 Gaba'),\n", + " ('IT EP-CLA Glut', 'Microglia NN'),\n", + " ('IT EP-CLA Glut', 'Sst Gaba'),\n", + " ('IT EP-CLA Glut', 'Vip Gaba'),\n", + " ('L2 IT ENT-po Glut', 'L2 IT ENT-po Glut'),\n", + " ('L2 IT PPP-APr Glut', 'L2 IT PPP-APr Glut'),\n", + " ('L2 IT PPP-APr Glut', 'Sncg Gaba'),\n", + " ('L2/3 IT CTX Glut', 'L2/3 IT CTX Glut'),\n", + " ('L2/3 IT CTX Glut', 'L2/3 IT RSP Glut'),\n", + " ('L2/3 IT CTX Glut', 'Vip Gaba'),\n", + " ('L2/3 IT PIR-ENTl Glut', 'OB Eomes Ms4a15 Glut'),\n", + " ('L2/3 IT PPP Glut', 'L2/3 IT PPP Glut'),\n", + " ('L2/3 IT RSP Glut', 'L2/3 IT RSP Glut'),\n", + " ('L2/3 IT RSP Glut', 'Sncg Gaba'),\n", + " ('L2/3 IT RSP Glut', 'Sst Gaba'),\n", + " ('L5 ET CTX Glut', 'L5 NP CTX Glut'),\n", + " ('L5 ET CTX Glut', 'Pvalb Gaba'),\n", + " ('L5 IT CTX Glut', 'L5 IT CTX Glut'),\n", + " ('L5 IT CTX Glut', 'L5 NP CTX Glut'),\n", + " ('L5 NP CTX Glut', 'L5 NP CTX Glut'),\n", + " ('L5 NP CTX Glut', 'Sst Gaba'),\n", + " ('L5 PPP Glut', 'L5 PPP Glut'),\n", + " ('L5 PPP Glut', 'NP PPP Glut'),\n", + " ('L5 PPP Glut', 'SUB-ProS Glut'),\n", + " ('L5 PPP Glut', 'Sst Gaba'),\n", + " ('L5/6 IT TPE-ENT Glut', 'L5/6 IT TPE-ENT Glut'),\n", + " ('L5/6 IT TPE-ENT Glut', 'Sst Gaba'),\n", + " ('L6 CT CTX Glut', 'Microglia NN'),\n", + " ('L6b CTX Glut', 'L6b CTX Glut'),\n", + " ('L6b CTX Glut', 'Microglia NN'),\n", + " ('L6b CTX Glut', 'OPC NN'),\n", + " ('L6b CTX Glut', 'Peri NN'),\n", + " ('L6b/CT ENT Glut', 'L6b/CT ENT Glut'),\n", + " ('LA-BLA-BMA-PA Glut', 'LA-BLA-BMA-PA Glut'),\n", + " ('LA-BLA-BMA-PA Glut', 'Pvalb chandelier Gaba'),\n", + " ('LA-BLA-BMA-PA Glut', 'Vip Gaba'),\n", + " ('LDT Fgf7 Gaba', 'LDT Fgf7 Gaba'),\n", + " ('LDT Vsx2 Nkx6-1 Nfib Glut', 'LDT Vsx2 Nkx6-1 Nfib Glut'),\n", + " ('LDT-DTN Gata3 Nfix Gaba', 'LDT-DTN Gata3 Nfix Gaba'),\n", + " ('LDT-PCG St18 Gaba', 'LDT-PCG St18 Gaba'),\n", + " ('LDT-PCG St18 Gaba', 'LDT-PCG Vsx2 Lhx4 Glut'),\n", + " ('LDT-PCG Vsx2 Lhx4 Glut', 'LDT-PCG Vsx2 Lhx4 Glut'),\n", + " ('LDT-PCG-CS Gata3 Lhx1 Gaba', 'LDT-PCG-CS Gata3 Lhx1 Gaba'),\n", + " ('LGv-SPFp-SPFm Nkx2-2 Tcf7l2 Gaba', 'LGv-SPFp-SPFm Nkx2-2 Tcf7l2 Gaba'),\n", + " ('LGv-SPFp-SPFm Nkx2-2 Tcf7l2 Gaba', 'Oligo NN'),\n", + " ('LGv-ZI Otx2 Gaba', 'LGv-ZI Otx2 Gaba'),\n", + " ('LGv-ZI Otx2 Gaba', 'Oligo NN'),\n", + " ('LH Pou4f1 Sox1 Glut', 'LH Pou4f1 Sox1 Glut'),\n", + " ('LH Pou4f1 Sox1 Glut', 'Oligo NN'),\n", + " ('LH Pou4f1 Sox1 Glut', 'Peri NN'),\n", + " ('LHA Barhl2 Glut', 'LHA Barhl2 Glut'),\n", + " ('LHA Pmch Glut', 'LHA Pmch Glut'),\n", + " ('LHA-AHN-PVH Otp Trh Glut', 'LHA-AHN-PVH Otp Trh Glut'),\n", + " ('LHA-AHN-PVH Otp Trh Glut', 'PVH-SO-PVa Otp Glut'),\n", + " ('LHA-AHN-PVH Otp Trh Glut', 'PVpo-VMPO-MPN Hmx2 Gaba'),\n", + " ('LSX Nkx2-1 Gaba', 'LSX Nkx2-1 Gaba'),\n", + " ('LSX Otx2 Gaba', 'LSX Otx2 Gaba'),\n", + " ('LSX Prdm12 Slit2 Gaba', 'LSX Prdm12 Slit2 Gaba'),\n", + " ('LSX Prdm12 Slit2 Gaba', 'TRS-BAC Sln Glut'),\n", + " ('LSX Prdm12 Zeb2 Gaba', 'LSX Prdm12 Zeb2 Gaba'),\n", + " ('LSX Sall3 Lmo1 Gaba', 'LSX Sall3 Lmo1 Gaba'),\n", + " ('LSX Sall3 Lmo1 Gaba', 'Oligo NN'),\n", + " ('LSX Sall3 Pax6 Gaba', 'LSX Sall3 Pax6 Gaba'),\n", + " ('Lamp5 Lhx6 Gaba', 'RHP-COA Ndnf Gaba'),\n", + " ('Lymphoid NN', 'Lymphoid NN'),\n", + " ('Lymphoid NN', 'OEC NN'),\n", + " ('Lymphoid NN', 'Peri NN'),\n", + " ('Lymphoid NN', 'SMC NN'),\n", + " ('Lymphoid NN', 'VLMC NN'),\n", + " ('MB-MY Tph2 Glut-Sero', 'MB-MY Tph2 Glut-Sero'),\n", + " ('MB-ant-ve Dmrta2 Glut', 'MB-ant-ve Dmrta2 Glut'),\n", + " ('MDRN Hoxb5 Ebf2 Gly-Gaba', 'MDRN Hoxb5 Ebf2 Gly-Gaba'),\n", + " ('MEA Otp Foxp2 Glut', 'MEA Otp Foxp2 Glut'),\n", + " ('MEA Slc17a7 Glut', 'MEA Slc17a7 Glut'),\n", + " ('MEA Slc17a7 Glut', 'Vip Gaba'),\n", + " ('MEA-BST Lhx6 Nfib Gaba', 'MEA-BST Lhx6 Nfib Gaba'),\n", + " ('MEA-BST Lhx6 Nr2e1 Gaba', 'MEA-BST Lhx6 Nr2e1 Gaba'),\n", + " ('MEA-BST Lhx6 Sp9 Gaba', 'MEA-BST Lhx6 Sp9 Gaba'),\n", + " ('MEA-BST Sox6 Gaba', 'MEA-BST Sox6 Gaba'),\n", + " ('MEA-COA-BMA Ccdc42 Glut', 'MEA-COA-BMA Ccdc42 Glut'),\n", + " ('MEA-COA-BMA Ccdc42 Glut', 'OPC NN'),\n", + " ('MEA-COA-BMA Ccdc42 Glut', 'VLMC NN'),\n", + " ('MH Tac2 Glut', 'MH Tac2 Glut'),\n", + " ('MH Tac2 Glut', 'Microglia NN'),\n", + " ('MH Tac2 Glut', 'OPC NN'),\n", + " ('MH Tac2 Glut', 'Oligo NN'),\n", + " ('MH Tac2 Glut', 'Peri NN'),\n", + " ('MM Foxb1 Glut', 'MM Foxb1 Glut'),\n", + " ('MM-ant Foxb1 Glut', 'MM-ant Foxb1 Glut'),\n", + " ('MM-ant Foxb1 Glut', 'Oligo NN'),\n", + " ('MPN-MPO-PVpo Hmx2 Glut', 'MPN-MPO-PVpo Hmx2 Glut'),\n", + " ('MPO-ADP Lhx8 Gaba', 'MPO-ADP Lhx8 Gaba'),\n", + " ('MRN-VTN-PPN Pax5 Cdh23 Gaba', 'MRN-VTN-PPN Pax5 Cdh23 Gaba'),\n", + " ('MRN-VTN-PPN Pax5 Cdh23 Gaba', 'PAG-MRN Pou3f1 Glut'),\n", + " ('MS-SF Bsx Glut', 'MS-SF Bsx Glut'),\n", + " ('MS-SF Bsx Glut', 'NDB-SI-ant Prdm12 Gaba'),\n", + " ('MS-SF Bsx Glut', 'OPC NN'),\n", + " ('MS-SF Bsx Glut', 'Oligo NN'),\n", + " ('MV Nkx6-1 Gly-Gaba', 'MV Nkx6-1 Gly-Gaba'),\n", + " ('MY Prox1 Lmo7 Gly-Gaba', 'Oligo NN'),\n", + " ('Microglia NN', 'NDB-SI-ant Prdm12 Gaba'),\n", + " ('Microglia NN', 'NP SUB Glut'),\n", + " ('Microglia NN', 'OB Dopa-Gaba'),\n", + " ('Microglia NN', 'OB Eomes Ms4a15 Glut'),\n", + " ('Microglia NN', 'OB Meis2 Thsd7b Gaba'),\n", + " ('Microglia NN', 'OB-STR-CTX Inh IMN'),\n", + " ('Microglia NN', 'OB-out Frmd7 Gaba'),\n", + " ('Microglia NN', 'OEC NN'),\n", + " ('Microglia NN', 'Oligo NN'),\n", + " ('Microglia NN', 'Peri NN'),\n", + " ('Microglia NN', 'SCsg Gabrr2 Gaba'),\n", + " ('Microglia NN', 'TMv-PMv Tbx3 Hist-Gaba'),\n", + " ('Microglia NN', 'TRS-BAC Sln Glut'),\n", + " ('Microglia NN', 'Tanycyte NN'),\n", + " ('Microglia NN', 'VLMC NN'),\n", + " ('ND-INC Foxd2 Glut', 'ND-INC Foxd2 Glut'),\n", + " ('NDB-SI-MA-STRv Lhx8 Gaba', 'NDB-SI-MA-STRv Lhx8 Gaba'),\n", + " ('NDB-SI-MA-STRv Lhx8 Gaba', 'Oligo NN'),\n", + " ('NDB-SI-ant Prdm12 Gaba', 'NDB-SI-ant Prdm12 Gaba'),\n", + " ('NLL Gata3 Gly-Gaba', 'NLL Gata3 Gly-Gaba'),\n", + " ('NLOT Rho Glut', 'NLOT Rho Glut'),\n", + " ('NP PPP Glut', 'NP SUB Glut'),\n", + " ('NP PPP Glut', 'Oligo NN'),\n", + " ('NP PPP Glut', 'SUB-ProS Glut'),\n", + " ('NP SUB Glut', 'NP SUB Glut'),\n", + " ('NP SUB Glut', 'Sst Gaba'),\n", + " ('NTS Dbh Glut', 'NTS Dbh Glut'),\n", + " ('NTS Dbh Glut', 'NTS-PARN Neurod2 Gly-Gaba'),\n", + " ('NTS Phox2b Glut', 'NTS Phox2b Glut'),\n", + " ('NTS Phox2b Glut', 'NTS-PARN Neurod2 Gly-Gaba'),\n", + " ('NTS-PARN Neurod2 Gly-Gaba', 'NTS-PARN Neurod2 Gly-Gaba'),\n", + " ('NTS-PARN Neurod2 Gly-Gaba', 'PARN-MDRNd-NTS Gbx2 Gly-Gaba'),\n", + " ('OB Dopa-Gaba', 'OB Eomes Ms4a15 Glut'),\n", + " ('OB Dopa-Gaba', 'OB-STR-CTX Inh IMN'),\n", + " ('OB Dopa-Gaba', 'Oligo NN'),\n", + " ('OB Dopa-Gaba', 'Peri NN'),\n", + " ('OB Eomes Ms4a15 Glut', 'OB Eomes Ms4a15 Glut'),\n", + " ('OB Eomes Ms4a15 Glut', 'OB Meis2 Thsd7b Gaba'),\n", + " ('OB Eomes Ms4a15 Glut', 'OB-STR-CTX Inh IMN'),\n", + " ('OB Eomes Ms4a15 Glut', 'OB-in Frmd7 Gaba'),\n", + " ('OB Eomes Ms4a15 Glut', 'OB-out Frmd7 Gaba'),\n", + " ('OB Meis2 Thsd7b Gaba', 'OB Meis2 Thsd7b Gaba'),\n", + " ('OB Meis2 Thsd7b Gaba', 'OB-STR-CTX Inh IMN'),\n", + " ('OB Meis2 Thsd7b Gaba', 'OB-out Frmd7 Gaba'),\n", + " ('OB Meis2 Thsd7b Gaba', 'OPC NN'),\n", + " ('OB Meis2 Thsd7b Gaba', 'Oligo NN'),\n", + " ('OB Meis2 Thsd7b Gaba', 'Peri NN'),\n", + " ('OB Trdn Gaba', 'OB Trdn Gaba'),\n", + " ('OB Trdn Gaba', 'OB-in Frmd7 Gaba'),\n", + " ('OB-STR-CTX Inh IMN', 'OB-STR-CTX Inh IMN'),\n", + " ('OB-STR-CTX Inh IMN', 'OB-out Frmd7 Gaba'),\n", + " ('OB-STR-CTX Inh IMN', 'OPC NN'),\n", + " ('OB-STR-CTX Inh IMN', 'Oligo NN'),\n", + " ('OB-STR-CTX Inh IMN', 'Peri NN'),\n", + " ('OB-in Frmd7 Gaba', 'OB-in Frmd7 Gaba'),\n", + " ('OB-out Frmd7 Gaba', 'OPC NN'),\n", + " ('OB-out Frmd7 Gaba', 'Oligo NN'),\n", + " ('OB-out Frmd7 Gaba', 'Peri NN'),\n", + " ('OEC NN', 'OEC NN'),\n", + " ('OEC NN', 'OPC NN'),\n", + " ('OEC NN', 'Oligo NN'),\n", + " ('OEC NN', 'Peri NN'),\n", + " ('OEC NN', 'SMC NN'),\n", + " ('OEC NN', 'Tanycyte NN'),\n", + " ('OEC NN', 'VLMC NN'),\n", + " ('OPC NN', 'PGRN-PARN-MDRN Hoxb5 Glut'),\n", + " ('OPC NN', 'SPA-SPFm-SPFp-POL-PIL-PoT Sp9 Glut'),\n", + " ('OPC NN', 'Sst Gaba'),\n", + " ('OPC NN', 'TRS-BAC Sln Glut'),\n", + " ('OPC NN', 'TU-ARH Otp Six6 Gaba'),\n", + " ('OPC NN', 'ZI Pax6 Gaba'),\n", + " ('OT D3 Folh1 Gaba', 'OT D3 Folh1 Gaba'),\n", + " ('OT D3 Folh1 Gaba', 'PAL-STR Gaba-Chol'),\n", + " ('OT D3 Folh1 Gaba', 'Peri NN'),\n", + " ('OT D3 Folh1 Gaba', 'SI-MA-LPO-LHA Skor1 Glut'),\n", + " ('OT D3 Folh1 Gaba', 'STR-PAL Chst9 Gaba'),\n", + " ('Oligo NN', 'PAG-MRN-RN Foxa2 Gaba'),\n", + " ('Oligo NN', 'PAS-MV Ebf2 Gly-Gaba'),\n", + " ('Oligo NN', 'POR Spp1 Gly-Gaba'),\n", + " ('Oligo NN', 'PPN-CUN-PCG Otp En1 Gaba'),\n", + " ('Oligo NN', 'PRNc Prox1 Brs3 Gly-Gaba'),\n", + " ('Oligo NN', 'PRP-NI-PRNc-GRN Otp Glut'),\n", + " ('Oligo NN', 'Peri NN'),\n", + " ('Oligo NN', 'RHP-COA Ndnf Gaba'),\n", + " ('Oligo NN', 'SI-MA-LPO-LHA Skor1 Glut'),\n", + " ('Oligo NN', 'SPA-SPFm-SPFp-POL-PIL-PoT Sp9 Glut'),\n", + " ('Oligo NN', 'SPVO Mafa Meis2 Glut'),\n", + " ('Oligo NN', 'STR D1 Sema5a Gaba'),\n", + " ('Oligo NN', 'STR-PAL Chst9 Gaba'),\n", + " ('Oligo NN', 'Sncg Gaba'),\n", + " ('Oligo NN', 'TRS-BAC Sln Glut'),\n", + " ('Oligo NN', 'VCO Mafa Meis2 Glut'),\n", + " ('Oligo NN', 'VLMC NN'),\n", + " ('PAG Pou4f1 Bnc2 Glut', 'PAG Pou4f1 Bnc2 Glut'),\n", + " ('PAG Pou4f1 Ebf2 Glut', 'PAG Pou4f1 Ebf2 Glut'),\n", + " ('PAG Pou4f2 Glut', 'PAG Pou4f2 Glut'),\n", + " ('PAG Pou4f2 Mesi2 Glut', 'PAG Pou4f2 Mesi2 Glut'),\n", + " ('PAG Pou4f3 Glut', 'PAG Pou4f3 Glut'),\n", + " ('PAG-MRN Pou3f1 Glut', 'PAG-MRN Pou3f1 Glut'),\n", + " ('PAG-MRN-RN Foxa2 Gaba', 'PAG-MRN-RN Foxa2 Gaba'),\n", + " ('PAG-ND-PCG Onecut1 Gaba', 'PAG-ND-PCG Onecut1 Gaba'),\n", + " ('PAG-PPN Pax5 Sox21 Gaba', 'PAG-PPN Pax5 Sox21 Gaba'),\n", + " ('PAG-RN Nkx2-2 Otx1 Gaba', 'PAG-RN Nkx2-2 Otx1 Gaba'),\n", + " ('PAG-SC Pou4f1 Zic1 Glut', 'PAG-SC Pou4f1 Zic1 Glut'),\n", + " ('PAG-SC Pou4f1 Zic1 Glut', 'SCig Foxb1 Glut'),\n", + " ('PAL-STR Gaba-Chol', 'PAL-STR Gaba-Chol'),\n", + " ('PAL-STR Gaba-Chol', 'STR D1 Sema5a Gaba'),\n", + " ('PARN-MDRNd-NTS Gbx2 Gly-Gaba', 'PARN-MDRNd-NTS Gbx2 Gly-Gaba'),\n", + " ('PAS-MV Ebf2 Gly-Gaba', 'PAS-MV Ebf2 Gly-Gaba'),\n", + " ('PB Evx2 Glut', 'PB Evx2 Glut'),\n", + " ('PB Lmx1a Glut', 'PB Lmx1a Glut'),\n", + " ('PB-NTS Phox2b Ebf3 Lmx1b Glut', 'PB-NTS Phox2b Ebf3 Lmx1b Glut'),\n", + " ('PBG Mtnr1a Glut-Chol', 'PBG Mtnr1a Glut-Chol'),\n", + " ('PDTg Otp Olig3 Gaba', 'PDTg Otp Olig3 Gaba'),\n", + " ('PDTg Otp Shroom3 Gaba', 'PDTg Otp Shroom3 Gaba'),\n", + " ('PDTg-PCG Pax6 Gaba', 'PDTg-PCG Pax6 Gaba'),\n", + " ('PF Fzd5 Glut', 'PF Fzd5 Glut'),\n", + " ('PG-TRN-LRN Fat2 Glut', 'PG-TRN-LRN Fat2 Glut'),\n", + " ('PGRN-PARN-MDRN Hoxb5 Glut', 'PGRN-PARN-MDRN Hoxb5 Glut'),\n", + " ('PH Pitx2 Glut', 'PH Pitx2 Glut'),\n", + " ('PH-LHA Foxb1 Glut', 'PH-LHA Foxb1 Glut'),\n", + " ('PH-SUM Foxa1 Glut', 'PH-SUM Foxa1 Glut'),\n", + " ('PH-ant-LHA Otp Bsx Glut', 'PH-ant-LHA Otp Bsx Glut'),\n", + " ('PMd-LHA Foxb1 Glut', 'PMd-LHA Foxb1 Glut'),\n", + " ('PMv-TMv Pitx2 Glut', 'PMv-TMv Pitx2 Glut'),\n", + " ('PPN-CUN-PCG Otp En1 Gaba', 'PPN-CUN-PCG Otp En1 Gaba'),\n", + " ('PPY-PGRNl Vip Glyc-Gaba', 'PPY-PGRNl Vip Glyc-Gaba'),\n", + " ('PRC-PAG Pax6 Glut', 'PRC-PAG Pax6 Glut'),\n", + " ('PRC-PAG Tcf7l2 Irx2 Glut', 'PRC-PAG Tcf7l2 Irx2 Glut'),\n", + " ('PRNc Otp Gly-Gaba', 'PRNc Otp Gly-Gaba'),\n", + " ('PRNc-NI-SG-RPO Vsx2 Nr4a2 Glut', 'PRNc-NI-SG-RPO Vsx2 Nr4a2 Glut'),\n", + " ('PRP Otp Gly-Gaba', 'PRP Otp Gly-Gaba'),\n", + " ('PRP-NI-PRNc-GRN Otp Glut', 'PRP-NI-PRNc-GRN Otp Glut'),\n", + " ('PRT Tcf7l2 Gaba', 'PRT Tcf7l2 Gaba'),\n", + " ('PVH-SO-PVa Otp Glut', 'PVH-SO-PVa Otp Glut'),\n", + " ('PVH-SO-PVa Otp Glut', 'Peri NN'),\n", + " ('PVHd-SBPV Six3 Prox1 Gaba', 'PVHd-SBPV Six3 Prox1 Gaba'),\n", + " ('PVR Six3 Sox3 Gaba', 'PVR Six3 Sox3 Gaba'),\n", + " ('PVR Six3 Sox3 Gaba', 'Tanycyte NN'),\n", + " ('PVT-PT Ntrk1 Glut', 'PVT-PT Ntrk1 Glut'),\n", + " ('PVpo-VMPO-MPN Hmx2 Gaba', 'PVpo-VMPO-MPN Hmx2 Gaba'),\n", + " ('Peri NN', 'Peri NN'),\n", + " ('Peri NN', 'SCsg Pde5a Glut'),\n", + " ('Peri NN', 'SMC NN'),\n", + " ('Peri NN', 'TRS-BAC Sln Glut'),\n", + " ('Peri NN', 'VLMC NN'),\n", + " ('Pineal Crx Glut', 'Pineal Crx Glut'),\n", + " ('RE-Xi Nox4 Glut', 'RE-Xi Nox4 Glut'),\n", + " ('RPA Pax6 Hoxb5 Gly-Gaba', 'RPA Pax6 Hoxb5 Gly-Gaba'),\n", + " ('RT-ZI Gnb3 Gaba', 'RT-ZI Gnb3 Gaba'),\n", + " ('SBPV-PVa Six6 Satb2 Gaba', 'SBPV-PVa Six6 Satb2 Gaba'),\n", + " ('SC Bnc2 Glut', 'SCs Dmbx1 Gaba'),\n", + " ('SC Bnc2 Glut', 'SCsg Gabrr2 Gaba'),\n", + " ('SC Lef1 Otx2 Gaba', 'SCs Dmbx1 Gaba'),\n", + " ('SC Lef1 Otx2 Gaba', 'SCsg Gabrr2 Gaba'),\n", + " ('SC Lef1 Otx2 Gaba', 'SCsg Pde5a Glut'),\n", + " ('SC Otx2 Gcnt4 Gaba', 'SCs Dmbx1 Gaba'),\n", + " ('SC Otx2 Gcnt4 Gaba', 'SCsg Gabrr2 Gaba'),\n", + " ('SC Tnnt1 Gli3 Gaba', 'SC Tnnt1 Gli3 Gaba'),\n", + " ('SC Tnnt1 Gli3 Gaba', 'SCig Tfap2b Chrnb3 Glut'),\n", + " ('SC Tnnt1 Gli3 Gaba', 'SCs Dmbx1 Gaba'),\n", + " ('SC Tnnt1 Gli3 Gaba', 'SCsg Pde5a Glut'),\n", + " ('SC-PAG Lef1 Emx2 Gaba', 'SC-PAG Lef1 Emx2 Gaba'),\n", + " ('SC-PAG Lef1 Emx2 Gaba', 'SCs Dmbx1 Gaba'),\n", + " ('SCH Six6 Cdc14a Gaba', 'SCH Six6 Cdc14a Gaba'),\n", + " ('SCH Six6 Cdc14a Gaba', 'SMC NN'),\n", + " ('SCig Foxb1 Glut', 'SCig Foxb1 Glut'),\n", + " ('SCig Foxb1 Glut', 'SCig Tfap2b Chrnb3 Glut'),\n", + " ('SCig Tfap2b Chrnb3 Glut', 'SCig Tfap2b Chrnb3 Glut'),\n", + " ('SCig Tfap2b Chrnb3 Glut', 'SCs Lef1 Gli3 Gaba'),\n", + " ('SCm-PAG Cdh23 Gaba', 'SCm-PAG Cdh23 Gaba'),\n", + " ('SCop Pou4f2 Neurod2 Glut', 'SCop Sln Glut'),\n", + " ('SCs Dmbx1 Gaba', 'SCsg Gabrr2 Gaba'),\n", + " ('SCs Dmbx1 Gaba', 'SCsg Pde5a Glut'),\n", + " ('SCs Pax7 Nfia Gaba', 'SCs Pax7 Nfia Gaba'),\n", + " ('SCsg Gabrr2 Gaba', 'SCsg Gabrr2 Gaba'),\n", + " ('SCsg Gabrr2 Gaba', 'SCsg Pde5a Glut'),\n", + " ('SCsg Pde5a Glut', 'SCsg Pde5a Glut'),\n", + " ('SCsg Pde5a Glut', 'VLMC NN'),\n", + " ('SI-MA-ACB Ebf1 Bnc2 Gaba', 'STR-PAL Chst9 Gaba'),\n", + " ('SI-MA-LPO-LHA Skor1 Glut', 'SI-MA-LPO-LHA Skor1 Glut'),\n", + " ('SI-MA-LPO-LHA Skor1 Glut', 'STR-PAL Chst9 Gaba'),\n", + " ('SMC NN', 'SMC NN'),\n", + " ('SMC NN', 'STR-PAL Chst9 Gaba'),\n", + " ('SMC NN', 'VLMC NN'),\n", + " ('SNc-VTA-RAmb Foxa1 Dopa', 'SNc-VTA-RAmb Foxa1 Dopa'),\n", + " ('SNr-VTA Pax5 Npas1 Gaba', 'SNr-VTA Pax5 Npas1 Gaba'),\n", + " ('SPA-SPFm-SPFp-POL-PIL-PoT Sp9 Glut', 'SPA-SPFm-SPFp-POL-PIL-PoT Sp9 Glut'),\n", + " ('SPVC Ccdc172 Glut', 'SPVC Ccdc172 Glut'),\n", + " ('SPVC Ccdc172 Glut', 'SPVI-SPVC Tlx3 Ebf3 Glut'),\n", + " ('SPVC Nmu Glut', 'SPVC Nmu Glut'),\n", + " ('SPVI-SPVC Sall3 Lhx1 Gly-Gaba', 'SPVI-SPVC Sall3 Lhx1 Gly-Gaba'),\n", + " ('SPVI-SPVC Tlx3 Ebf3 Glut', 'SPVI-SPVC Tlx3 Ebf3 Glut'),\n", + " ('SPVO Mafa Meis2 Glut', 'SPVO Mafa Meis2 Glut'),\n", + " ('STN-PSTN Pitx2 Glut', 'STN-PSTN Pitx2 Glut'),\n", + " ('STR D1 Gaba', 'STR D1 Gaba'),\n", + " ('STR D1 Gaba', 'STR D2 Gaba'),\n", + " ('STR D1 Gaba', 'STR Prox1 Lhx6 Gaba'),\n", + " ('STR D1 Sema5a Gaba', 'STR D1 Sema5a Gaba'),\n", + " ('STR D1 Sema5a Gaba', 'STR-PAL Chst9 Gaba'),\n", + " ('STR D1 Sema5a Gaba', 'Sst Chodl Gaba'),\n", + " ('STR D2 Gaba', 'STR D2 Gaba'),\n", + " ('STR Lhx8 Gaba', 'STR Lhx8 Gaba'),\n", + " ('STR Prox1 Lhx6 Gaba', 'STR-PAL Chst9 Gaba'),\n", + " ('STR-PAL Chst9 Gaba', 'STR-PAL Chst9 Gaba'),\n", + " ('STR-PAL Chst9 Gaba', 'VLMC NN'),\n", + " ('SUB-ProS Glut', 'SUB-ProS Glut'),\n", + " ('SUB-ProS Glut', 'Sst Gaba'),\n", + " ('TMd-DMH Foxd2 Gaba', 'TMd-DMH Foxd2 Gaba'),\n", + " ('TRS-BAC Sln Glut', 'TRS-BAC Sln Glut'),\n", + " ('TU-ARH Otp Six6 Gaba', 'TU-ARH Otp Six6 Gaba'),\n", + " ('Tanycyte NN', 'Tanycyte NN'),\n", + " ('Tanycyte NN', 'VLMC NN'),\n", + " ('VCO Mafa Meis2 Glut', 'VCO Mafa Meis2 Glut'),\n", + " ('VLMC NN', 'VLMC NN'),\n", + " ('VMH Fezf1 Glut', 'VMH Fezf1 Glut'),\n", + " ('VMH Nr5a1 Glut', 'VMH Nr5a1 Glut'),\n", + " ('ZI Pax6 Gaba', 'ZI Pax6 Gaba')}" + ] + }, + "execution_count": 9, + "metadata": {}, + "output_type": "execute_result" + } + ], + "source": [ + "pair_set" + ] + }, + { + "cell_type": "code", + "execution_count": 10, + "id": "b618f443", + "metadata": {}, + "outputs": [], + "source": [ + "pair_set_15um = {('ABC NN', 'ABC NN'),\n", + " ('ABC NN', 'Astro-TE NN'),\n", + " ('ABC NN', 'BAM NN'),\n", + " ('ABC NN', 'Endo NN'),\n", + " ('ABC NN', 'OEC NN'),\n", + " ('ABC NN', 'Peri NN'),\n", + " ('ABC NN', 'SMC NN'),\n", + " ('ABC NN', 'VLMC NN'),\n", + " ('ACB-BST-FS D1 Gaba', 'ACB-BST-FS D1 Gaba'),\n", + " ('AD Serpinb7 Glut', 'AD Serpinb7 Glut'),\n", + " ('ADP-MPO Trp73 Glut', 'ADP-MPO Trp73 Glut'),\n", + " ('AHN Onecut3 Gaba', 'AHN Onecut3 Gaba'),\n", + " ('APN C1ql2 Glut', 'APN C1ql2 Glut'),\n", + " ('APN C1ql4 Glut', 'APN C1ql4 Glut'),\n", + " ('ARH-PVp Tbx3 Gaba', 'ARH-PVp Tbx3 Gaba'),\n", + " ('ARH-PVp Tbx3 Glut', 'ARH-PVp Tbx3 Glut'),\n", + " ('AVPV-MEPO-SFO Tbr1 Glut', 'AVPV-MEPO-SFO Tbr1 Glut'),\n", + " ('AVPV-MEPO-SFO Tbr1 Glut', 'Tanycyte NN'),\n", + " ('Astro-CB NN', 'Astro-CB NN'),\n", + " ('Astro-CB NN', 'Bergmann NN'),\n", + " ('Astro-CB NN', 'CB Granule Glut'),\n", + " ('Astro-CB NN', 'Endo NN'),\n", + " ('Astro-CB NN', 'Microglia NN'),\n", + " ('Astro-CB NN', 'Oligo NN'),\n", + " ('Astro-NT NN', 'Astro-NT NN'),\n", + " ('Astro-NT NN', 'BAM NN'),\n", + " ('Astro-NT NN', 'Endo NN'),\n", + " ('Astro-NT NN', 'Ependymal NN'),\n", + " ('Astro-NT NN', 'Microglia NN'),\n", + " ('Astro-NT NN', 'OPC NN'),\n", + " ('Astro-NT NN', 'Oligo NN'),\n", + " ('Astro-NT NN', 'Peri NN'),\n", + " ('Astro-NT NN', 'SCsg Gabrr2 Gaba'),\n", + " ('Astro-NT NN', 'SMC NN'),\n", + " ('Astro-NT NN', 'TRS-BAC Sln Glut'),\n", + " ('Astro-NT NN', 'VLMC NN'),\n", + " ('Astro-OLF NN', 'Astro-OLF NN'),\n", + " ('Astro-OLF NN', 'Endo NN'),\n", + " ('Astro-OLF NN', 'Microglia NN'),\n", + " ('Astro-OLF NN', 'OB Dopa-Gaba'),\n", + " ('Astro-OLF NN', 'OB Eomes Ms4a15 Glut'),\n", + " ('Astro-OLF NN', 'OB Meis2 Thsd7b Gaba'),\n", + " ('Astro-OLF NN', 'OB-STR-CTX Inh IMN'),\n", + " ('Astro-OLF NN', 'OB-out Frmd7 Gaba'),\n", + " ('Astro-OLF NN', 'Oligo NN'),\n", + " ('Astro-OLF NN', 'Peri NN'),\n", + " ('Astro-OLF NN', 'SMC NN'),\n", + " ('Astro-TE NN', 'Astro-TE NN'),\n", + " ('Astro-TE NN', 'BAM NN'),\n", + " ('Astro-TE NN', 'DG-PIR Ex IMN'),\n", + " ('Astro-TE NN', 'Endo NN'),\n", + " ('Astro-TE NN', 'Ependymal NN'),\n", + " ('Astro-TE NN', 'HPF CR Glut'),\n", + " ('Astro-TE NN', 'Microglia NN'),\n", + " ('Astro-TE NN', 'OB-STR-CTX Inh IMN'),\n", + " ('Astro-TE NN', 'OPC NN'),\n", + " ('Astro-TE NN', 'Oligo NN'),\n", + " ('Astro-TE NN', 'Peri NN'),\n", + " ('Astro-TE NN', 'SMC NN'),\n", + " ('Astro-TE NN', 'VLMC NN'),\n", + " ('Astroependymal NN', 'Astroependymal NN'),\n", + " ('Astroependymal NN', 'Ependymal NN'),\n", + " ('Astroependymal NN', 'MH Tac2 Glut'),\n", + " ('Astroependymal NN', 'VLMC NN'),\n", + " ('BAM NN', 'BAM NN'),\n", + " ('BAM NN', 'Bergmann NN'),\n", + " ('BAM NN', 'CHOR NN'),\n", + " ('BAM NN', 'Endo NN'),\n", + " ('BAM NN', 'Microglia NN'),\n", + " ('BAM NN', 'OEC NN'),\n", + " ('BAM NN', 'Peri NN'),\n", + " ('BAM NN', 'SMC NN'),\n", + " ('BAM NN', 'VLMC NN'),\n", + " ('BST Tac2 Gaba', 'BST Tac2 Gaba'),\n", + " ('BST-MPN Six3 Nrgn Gaba', 'BST-MPN Six3 Nrgn Gaba'),\n", + " ('BST-po Iigp1 Glut', 'BST-po Iigp1 Glut'),\n", + " ('Bergmann NN', 'Bergmann NN'),\n", + " ('Bergmann NN', 'CB PLI Gly-Gaba'),\n", + " ('Bergmann NN', 'CBX Golgi Gly-Gaba'),\n", + " ('Bergmann NN', 'CBX Purkinje Gaba'),\n", + " ('Bergmann NN', 'Endo NN'),\n", + " ('Bergmann NN', 'Oligo NN'),\n", + " ('Bergmann NN', 'Peri NN'),\n", + " ('CA1-ProS Glut', 'CA1-ProS Glut'),\n", + " ('CA1-ProS Glut', 'Pvalb chandelier Gaba'),\n", + " ('CA2-FC-IG Glut', 'CA2-FC-IG Glut'),\n", + " ('CA3 Glut', 'CA3 Glut'),\n", + " ('CB Granule Glut', 'CB Granule Glut'),\n", + " ('CB Granule Glut', 'CB PLI Gly-Gaba'),\n", + " ('CB Granule Glut', 'CBX Golgi Gly-Gaba'),\n", + " ('CB Granule Glut', 'DCO UBC Glut'),\n", + " ('CB PLI Gly-Gaba', 'CB PLI Gly-Gaba'),\n", + " ('CB PLI Gly-Gaba', 'CBX Purkinje Gaba'),\n", + " ('CBN Dmbx1 Gaba', 'CBN Dmbx1 Gaba'),\n", + " ('CBN Dmbx1 Gaba', 'Oligo NN'),\n", + " ('CBX MLI Cdh22 Gaba', 'CBX MLI Cdh22 Gaba'),\n", + " ('CBX MLI Cdh22 Gaba', 'CBX MLI Megf11 Gaba'),\n", + " ('CEA-AAA-BST Six3 Sp9 Gaba', 'CEA-AAA-BST Six3 Sp9 Gaba'),\n", + " ('CEA-BST Ebf1 Pdyn Gaba', 'CEA-BST Ebf1 Pdyn Gaba'),\n", + " ('CHOR NN', 'CHOR NN'),\n", + " ('CHOR NN', 'Endo NN'),\n", + " ('CHOR NN', 'Lymphoid NN'),\n", + " ('CHOR NN', 'Peri NN'),\n", + " ('CHOR NN', 'VLMC NN'),\n", + " ('CLA-EPd-CTX Car3 Glut', 'CLA-EPd-CTX Car3 Glut'),\n", + " ('CLA-EPd-CTX Car3 Glut', 'L2/3 IT RSP Glut'),\n", + " ('CM-IAD-CL-PCN Sema5b Glut', 'CM-IAD-CL-PCN Sema5b Glut'),\n", + " ('COAa-PAA-MEA Barhl2 Glut', 'COAa-PAA-MEA Barhl2 Glut'),\n", + " ('COAa-PAA-MEA Barhl2 Glut', 'Oligo NN'),\n", + " ('COAp Grxcr2 Glut', 'COAp Grxcr2 Glut'),\n", + " ('CS-PRNr-PCG Tmem163 Otp Gaba', 'CS-PRNr-PCG Tmem163 Otp Gaba'),\n", + " ('CS-RPO Meis2 Gaba', 'CS-RPO Meis2 Gaba'),\n", + " ('CT SUB Glut', 'CT SUB Glut'),\n", + " ('CT SUB Glut', 'VLMC NN'),\n", + " ('CUN-PPN Evx2 Meis2 Glut', 'CUN-PPN Evx2 Meis2 Glut'),\n", + " ('DC NN', 'Endo NN'),\n", + " ('DC NN', 'VLMC NN'),\n", + " ('DCO UBC Glut', 'DCO UBC Glut'),\n", + " ('DG Glut', 'DG Glut'),\n", + " ('DG-PIR Ex IMN', 'DG-PIR Ex IMN'),\n", + " ('DG-PIR Ex IMN', 'Endo NN'),\n", + " ('DG-PIR Ex IMN', 'Lamp5 Lhx6 Gaba'),\n", + " ('DG-PIR Ex IMN', 'Microglia NN'),\n", + " ('DG-PIR Ex IMN', 'Oligo NN'),\n", + " ('DMH Hmx2 Gaba', 'DMH Hmx2 Gaba'),\n", + " ('DMH Hmx2 Glut', 'DMH Hmx2 Glut'),\n", + " ('DMH Nkx2-4 Glut', 'DMH Nkx2-4 Glut'),\n", + " ('DMH-LHA Gsx1 Gaba', 'DMH-LHA Gsx1 Gaba'),\n", + " ('DTN-LDT-IPN Otp Pax3 Gaba', 'DTN-LDT-IPN Otp Pax3 Gaba'),\n", + " ('ENTmv-PA-COAp Glut', 'ENTmv-PA-COAp Glut'),\n", + " ('Endo NN', 'Endo NN'),\n", + " ('Endo NN', 'Lymphoid NN'),\n", + " ('Endo NN', 'MH Tac2 Glut'),\n", + " ('Endo NN', 'Microglia NN'),\n", + " ('Endo NN', 'OB-STR-CTX Inh IMN'),\n", + " ('Endo NN', 'OB-out Frmd7 Gaba'),\n", + " ('Endo NN', 'OEC NN'),\n", + " ('Endo NN', 'OPC NN'),\n", + " ('Endo NN', 'Oligo NN'),\n", + " ('Endo NN', 'PVH-SO-PVa Otp Glut'),\n", + " ('Endo NN', 'Peri NN'),\n", + " ('Endo NN', 'SMC NN'),\n", + " ('Endo NN', 'TRS-BAC Sln Glut'),\n", + " ('Endo NN', 'VLMC NN'),\n", + " ('Ependymal NN', 'Ependymal NN'),\n", + " ('Ependymal NN', 'MEA-BST Sox6 Gaba'),\n", + " ('Ependymal NN', 'Microglia NN'),\n", + " ('Ependymal NN', 'OB-STR-CTX Inh IMN'),\n", + " ('Ependymal NN', 'Tanycyte NN'),\n", + " ('GPe-SI Sox6 Cyp26b1 Gaba', 'GPe-SI Sox6 Cyp26b1 Gaba'),\n", + " ('GPe-SI Sox6 Cyp26b1 Gaba', 'Oligo NN'),\n", + " ('HB Calcb Chol', 'HB Calcb Chol'),\n", + " ('HPF CR Glut', 'HPF CR Glut'),\n", + " ('Hypendymal NN', 'Hypendymal NN'),\n", + " ('IC Six3 En2 Gaba', 'IC Six3 En2 Gaba'),\n", + " ('IF-RL-CLI-PAG Foxa1 Glut', 'IF-RL-CLI-PAG Foxa1 Glut'),\n", + " ('IPN Otp Crisp1 Gaba', 'IPN Otp Crisp1 Gaba'),\n", + " ('IPN-LDT Vsx2 Nkx6-1 Glut', 'IPN-LDT Vsx2 Nkx6-1 Glut'),\n", + " ('IT AON-TT-DP Glut', 'IT AON-TT-DP Glut'),\n", + " ('IT EP-CLA Glut', 'IT EP-CLA Glut'),\n", + " ('L2 IT PPP-APr Glut', 'L2 IT PPP-APr Glut'),\n", + " ('L2/3 IT CTX Glut', 'L2/3 IT CTX Glut'),\n", + " ('L2/3 IT CTX Glut', 'L2/3 IT RSP Glut'),\n", + " ('L2/3 IT CTX Glut', 'Vip Gaba'),\n", + " ('L2/3 IT PIR-ENTl Glut', 'L2/3 IT PIR-ENTl Glut'),\n", + " ('L2/3 IT PPP Glut', 'L2/3 IT PPP Glut'),\n", + " ('L2/3 IT RSP Glut', 'L2/3 IT RSP Glut'),\n", + " ('L2/3 IT RSP Glut', 'Vip Gaba'),\n", + " ('L5 IT CTX Glut', 'L5 IT CTX Glut'),\n", + " ('L5 NP CTX Glut', 'L5 NP CTX Glut'),\n", + " ('L5 PPP Glut', 'L5 PPP Glut'),\n", + " ('L5 PPP Glut', 'NP PPP Glut'),\n", + " ('L5/6 IT TPE-ENT Glut', 'L5/6 IT TPE-ENT Glut'),\n", + " ('L6 CT CTX Glut', 'L6 CT CTX Glut'),\n", + " ('L6 IT CTX Glut', 'L6 IT CTX Glut'),\n", + " ('L6b CTX Glut', 'L6b CTX Glut'),\n", + " ('L6b/CT ENT Glut', 'L6b/CT ENT Glut'),\n", + " ('LDT-PCG St18 Gaba', 'LDT-PCG St18 Gaba'),\n", + " ('LDT-PCG Vsx2 Lhx4 Glut', 'LDT-PCG Vsx2 Lhx4 Glut'),\n", + " ('LDT-PCG-CS Gata3 Lhx1 Gaba', 'LDT-PCG-CS Gata3 Lhx1 Gaba'),\n", + " ('LGv-SPFp-SPFm Nkx2-2 Tcf7l2 Gaba', 'LGv-SPFp-SPFm Nkx2-2 Tcf7l2 Gaba'),\n", + " ('LH Pou4f1 Sox1 Glut', 'LH Pou4f1 Sox1 Glut'),\n", + " ('LHA-AHN-PVH Otp Trh Glut', 'LHA-AHN-PVH Otp Trh Glut'),\n", + " ('LSX Nkx2-1 Gaba', 'LSX Nkx2-1 Gaba'),\n", + " ('LSX Otx2 Gaba', 'LSX Otx2 Gaba'),\n", + " ('LSX Prdm12 Zeb2 Gaba', 'LSX Prdm12 Zeb2 Gaba'),\n", + " ('LSX Sall3 Lmo1 Gaba', 'LSX Sall3 Lmo1 Gaba'),\n", + " ('LSX Sall3 Pax6 Gaba', 'LSX Sall3 Pax6 Gaba'),\n", + " ('Lamp5 Gaba', 'Lamp5 Gaba'),\n", + " ('Lamp5 Lhx6 Gaba', 'Lamp5 Lhx6 Gaba'),\n", + " ('Lymphoid NN', 'Lymphoid NN'),\n", + " ('Lymphoid NN', 'OEC NN'),\n", + " ('Lymphoid NN', 'Peri NN'),\n", + " ('Lymphoid NN', 'VLMC NN'),\n", + " ('MB-MY Tph2 Glut-Sero', 'MB-MY Tph2 Glut-Sero'),\n", + " ('MEA-BST Lhx6 Nfib Gaba', 'MEA-BST Lhx6 Nfib Gaba'),\n", + " ('MEA-BST Lhx6 Sp9 Gaba', 'MEA-BST Lhx6 Sp9 Gaba'),\n", + " ('MEA-BST Sox6 Gaba', 'MEA-BST Sox6 Gaba'),\n", + " ('MEA-COA-BMA Ccdc42 Glut', 'MEA-COA-BMA Ccdc42 Glut'),\n", + " ('MH Tac2 Glut', 'MH Tac2 Glut'),\n", + " ('MH Tac2 Glut', 'OPC NN'),\n", + " ('MH Tac2 Glut', 'Oligo NN'),\n", + " ('MM Foxb1 Glut', 'MM Foxb1 Glut'),\n", + " ('MM-ant Foxb1 Glut', 'MM-ant Foxb1 Glut'),\n", + " ('MPN-MPO-PVpo Hmx2 Glut', 'MPN-MPO-PVpo Hmx2 Glut'),\n", + " ('MPO-ADP Lhx8 Gaba', 'MPO-ADP Lhx8 Gaba'),\n", + " ('MRN-VTN-PPN Pax5 Cdh23 Gaba', 'MRN-VTN-PPN Pax5 Cdh23 Gaba'),\n", + " ('MS-SF Bsx Glut', 'MS-SF Bsx Glut'),\n", + " ('MV-SPIV-PRP Dmbx1 Gly-Gaba', 'MV-SPIV-PRP Dmbx1 Gly-Gaba'),\n", + " ('Microglia NN', 'Microglia NN'),\n", + " ('Microglia NN', 'OB Dopa-Gaba'),\n", + " ('Microglia NN', 'OB Meis2 Thsd7b Gaba'),\n", + " ('Microglia NN', 'OB-STR-CTX Inh IMN'),\n", + " ('Microglia NN', 'OB-out Frmd7 Gaba'),\n", + " ('Microglia NN', 'OEC NN'),\n", + " ('Microglia NN', 'OPC NN'),\n", + " ('Microglia NN', 'Oligo NN'),\n", + " ('Microglia NN', 'Peri NN'),\n", + " ('Microglia NN', 'SMC NN'),\n", + " ('Microglia NN', 'VLMC NN'),\n", + " ('ND-INC Foxd2 Glut', 'ND-INC Foxd2 Glut'),\n", + " ('NDB-SI-MA-STRv Lhx8 Gaba', 'NDB-SI-MA-STRv Lhx8 Gaba'),\n", + " ('NDB-SI-ant Prdm12 Gaba', 'NDB-SI-ant Prdm12 Gaba'),\n", + " ('NLL Gata3 Gly-Gaba', 'NLL Gata3 Gly-Gaba'),\n", + " ('NP PPP Glut', 'NP PPP Glut'),\n", + " ('NP SUB Glut', 'NP SUB Glut'),\n", + " ('NTS Dbh Glut', 'NTS Dbh Glut'),\n", + " ('NTS Phox2b Glut', 'NTS Phox2b Glut'),\n", + " ('NTS-PARN Neurod2 Gly-Gaba', 'NTS-PARN Neurod2 Gly-Gaba'),\n", + " ('OB Dopa-Gaba', 'OB Dopa-Gaba'),\n", + " ('OB Dopa-Gaba', 'OB Eomes Ms4a15 Glut'),\n", + " ('OB Dopa-Gaba', 'OB Meis2 Thsd7b Gaba'),\n", + " ('OB Dopa-Gaba', 'OB-STR-CTX Inh IMN'),\n", + " ('OB Dopa-Gaba', 'OB-out Frmd7 Gaba'),\n", + " ('OB Dopa-Gaba', 'Oligo NN'),\n", + " ('OB Dopa-Gaba', 'Peri NN'),\n", + " ('OB Eomes Ms4a15 Glut', 'OB Eomes Ms4a15 Glut'),\n", + " ('OB Eomes Ms4a15 Glut', 'OB Meis2 Thsd7b Gaba'),\n", + " ('OB Eomes Ms4a15 Glut', 'OB-out Frmd7 Gaba'),\n", + " ('OB Meis2 Thsd7b Gaba', 'OB Meis2 Thsd7b Gaba'),\n", + " ('OB Meis2 Thsd7b Gaba', 'OB-STR-CTX Inh IMN'),\n", + " ('OB Meis2 Thsd7b Gaba', 'OB-out Frmd7 Gaba'),\n", + " ('OB Meis2 Thsd7b Gaba', 'OPC NN'),\n", + " ('OB Trdn Gaba', 'OB Trdn Gaba'),\n", + " ('OB Trdn Gaba', 'OB-in Frmd7 Gaba'),\n", + " ('OB-STR-CTX Inh IMN', 'OB-STR-CTX Inh IMN'),\n", + " ('OB-STR-CTX Inh IMN', 'OB-out Frmd7 Gaba'),\n", + " ('OB-STR-CTX Inh IMN', 'OPC NN'),\n", + " ('OB-STR-CTX Inh IMN', 'Oligo NN'),\n", + " ('OB-STR-CTX Inh IMN', 'Peri NN'),\n", + " ('OB-in Frmd7 Gaba', 'OB-in Frmd7 Gaba'),\n", + " ('OB-mi Frmd7 Gaba', 'OB-mi Frmd7 Gaba'),\n", + " ('OB-out Frmd7 Gaba', 'OB-out Frmd7 Gaba'),\n", + " ('OB-out Frmd7 Gaba', 'OPC NN'),\n", + " ('OB-out Frmd7 Gaba', 'Oligo NN'),\n", + " ('OB-out Frmd7 Gaba', 'Peri NN'),\n", + " ('OEC NN', 'OEC NN'),\n", + " ('OEC NN', 'OPC NN'),\n", + " ('OEC NN', 'Oligo NN'),\n", + " ('OEC NN', 'Peri NN'),\n", + " ('OEC NN', 'VLMC NN'),\n", + " ('OPC NN', 'OPC NN'),\n", + " ('OPC NN', 'Oligo NN'),\n", + " ('OPC NN', 'Peri NN'),\n", + " ('OPC NN', 'STR Prox1 Lhx6 Gaba'),\n", + " ('OPC NN', 'Sst Gaba'),\n", + " ('OT D3 Folh1 Gaba', 'OT D3 Folh1 Gaba'),\n", + " ('OT D3 Folh1 Gaba', 'SI-MA-LPO-LHA Skor1 Glut'),\n", + " ('Oligo NN', 'Oligo NN'),\n", + " ('Oligo NN', 'Peri NN'),\n", + " ('Oligo NN', 'RT-ZI Gnb3 Gaba'),\n", + " ('Oligo NN', 'SI-MA-LPO-LHA Skor1 Glut'),\n", + " ('Oligo NN', 'STR-PAL Chst9 Gaba'),\n", + " ('Oligo NN', 'Sst Chodl Gaba'),\n", + " ('Oligo NN', 'TRS-BAC Sln Glut'),\n", + " ('PAG Pou4f1 Ebf2 Glut', 'PAG Pou4f1 Ebf2 Glut'),\n", + " ('PAG Pou4f2 Glut', 'PAG Pou4f2 Glut'),\n", + " ('PAG Pou4f2 Mesi2 Glut', 'PAG Pou4f2 Mesi2 Glut'),\n", + " ('PAG-MRN Pou3f1 Glut', 'PAG-MRN Pou3f1 Glut'),\n", + " ('PAG-MRN-RN Foxa2 Gaba', 'PAG-MRN-RN Foxa2 Gaba'),\n", + " ('PAG-ND-PCG Onecut1 Gaba', 'PAG-ND-PCG Onecut1 Gaba'),\n", + " ('PAG-PPN Pax5 Sox21 Gaba', 'PAG-PPN Pax5 Sox21 Gaba'),\n", + " ('PAG-SC Pou4f1 Zic1 Glut', 'PAG-SC Pou4f1 Zic1 Glut'),\n", + " ('PAL-STR Gaba-Chol', 'PAL-STR Gaba-Chol'),\n", + " ('PARN-MDRNd-NTS Gbx2 Gly-Gaba', 'PARN-MDRNd-NTS Gbx2 Gly-Gaba'),\n", + " ('PAS-MV Ebf2 Gly-Gaba', 'PAS-MV Ebf2 Gly-Gaba'),\n", + " ('PB Evx2 Glut', 'PB Evx2 Glut'),\n", + " ('PB Lmx1a Glut', 'PB Lmx1a Glut'),\n", + " ('PB-NTS Phox2b Ebf3 Lmx1b Glut', 'PB-NTS Phox2b Ebf3 Lmx1b Glut'),\n", + " ('PBG Mtnr1a Glut-Chol', 'PBG Mtnr1a Glut-Chol'),\n", + " ('PCG-PRNr Vsx2 Nkx6-1 Glut', 'PCG-PRNr Vsx2 Nkx6-1 Glut'),\n", + " ('PDTg Otp Olig3 Gaba', 'PDTg Otp Olig3 Gaba'),\n", + " ('PH-LHA Foxb1 Glut', 'PH-LHA Foxb1 Glut'),\n", + " ('PH-SUM Foxa1 Glut', 'PH-SUM Foxa1 Glut'),\n", + " ('PH-ant-LHA Otp Bsx Glut', 'PH-ant-LHA Otp Bsx Glut'),\n", + " ('PMd-LHA Foxb1 Glut', 'PMd-LHA Foxb1 Glut'),\n", + " ('PPN-CUN-PCG Otp En1 Gaba', 'PPN-CUN-PCG Otp En1 Gaba'),\n", + " ('PRNc Otp Gly-Gaba', 'PRNc Otp Gly-Gaba'),\n", + " ('PRNc-NI-SG-RPO Vsx2 Nr4a2 Glut', 'PRNc-NI-SG-RPO Vsx2 Nr4a2 Glut'),\n", + " ('PRP-NI-PRNc-GRN Otp Glut', 'PRP-NI-PRNc-GRN Otp Glut'),\n", + " ('PRT Tcf7l2 Gaba', 'PRT Tcf7l2 Gaba'),\n", + " ('PVH-SO-PVa Otp Glut', 'PVH-SO-PVa Otp Glut'),\n", + " ('PVHd-DMH Lhx6 Gaba', 'PVHd-DMH Lhx6 Gaba'),\n", + " ('PVR Six3 Sox3 Gaba', 'PVR Six3 Sox3 Gaba'),\n", + " ('PVT-PT Ntrk1 Glut', 'PVT-PT Ntrk1 Glut'),\n", + " ('PVpo-VMPO-MPN Hmx2 Gaba', 'PVpo-VMPO-MPN Hmx2 Gaba'),\n", + " ('Peri NN', 'Peri NN'),\n", + " ('Peri NN', 'SMC NN'),\n", + " ('Peri NN', 'VLMC NN'),\n", + " ('Pineal Crx Glut', 'Pineal Crx Glut'),\n", + " ('Pvalb Gaba', 'Pvalb Gaba'),\n", + " ('RHP-COA Ndnf Gaba', 'RHP-COA Ndnf Gaba'),\n", + " ('RPA Pax6 Hoxb5 Gly-Gaba', 'RPA Pax6 Hoxb5 Gly-Gaba'),\n", + " ('RT-ZI Gnb3 Gaba', 'RT-ZI Gnb3 Gaba'),\n", + " ('SBPV-PVa Six6 Satb2 Gaba', 'SBPV-PVa Six6 Satb2 Gaba'),\n", + " ('SC Lef1 Otx2 Gaba', 'SC Lef1 Otx2 Gaba'),\n", + " ('SC Lef1 Otx2 Gaba', 'SCsg Pde5a Glut'),\n", + " ('SC Tnnt1 Gli3 Gaba', 'SC Tnnt1 Gli3 Gaba'),\n", + " ('SCH Six6 Cdc14a Gaba', 'SCH Six6 Cdc14a Gaba'),\n", + " ('SCig Foxb1 Glut', 'SCig Foxb1 Glut'),\n", + " ('SCig Tfap2b Chrnb3 Glut', 'SCig Tfap2b Chrnb3 Glut'),\n", + " ('SCiw Pitx2 Glut', 'SCiw Pitx2 Glut'),\n", + " ('SCop Sln Glut', 'SCop Sln Glut'),\n", + " ('SCs Dmbx1 Gaba', 'SCs Dmbx1 Gaba'),\n", + " ('SCs Pax7 Nfia Gaba', 'SCs Pax7 Nfia Gaba'),\n", + " ('SCsg Gabrr2 Gaba', 'SCsg Gabrr2 Gaba'),\n", + " ('SCsg Gabrr2 Gaba', 'SCsg Pde5a Glut'),\n", + " ('SCsg Pde5a Glut', 'SCsg Pde5a Glut'),\n", + " ('SCsg Pde5a Glut', 'VLMC NN'),\n", + " ('SI-MA-LPO-LHA Skor1 Glut', 'SI-MA-LPO-LHA Skor1 Glut'),\n", + " ('SI-MPO-LPO Lhx8 Gaba', 'SI-MPO-LPO Lhx8 Gaba'),\n", + " ('SMC NN', 'SMC NN'),\n", + " ('SMC NN', 'VLMC NN'),\n", + " ('SNc-VTA-RAmb Foxa1 Dopa', 'SNc-VTA-RAmb Foxa1 Dopa'),\n", + " ('SPA-SPFm-SPFp-POL-PIL-PoT Sp9 Glut', 'SPA-SPFm-SPFp-POL-PIL-PoT Sp9 Glut'),\n", + " ('SPVC Ccdc172 Glut', 'SPVC Ccdc172 Glut'),\n", + " ('SPVI-SPVC Sall3 Lhx1 Gly-Gaba', 'SPVI-SPVC Sall3 Lhx1 Gly-Gaba'),\n", + " ('STN-PSTN Pitx2 Glut', 'STN-PSTN Pitx2 Glut'),\n", + " ('STR D1 Gaba', 'STR D1 Gaba'),\n", + " ('STR D1 Sema5a Gaba', 'STR D1 Sema5a Gaba'),\n", + " ('STR D1 Sema5a Gaba', 'STR-PAL Chst9 Gaba'),\n", + " ('STR D2 Gaba', 'STR D2 Gaba'),\n", + " ('STR Lhx8 Gaba', 'STR Lhx8 Gaba'),\n", + " ('STR Prox1 Lhx6 Gaba', 'STR Prox1 Lhx6 Gaba'),\n", + " ('STR-PAL Chst9 Gaba', 'STR-PAL Chst9 Gaba'),\n", + " ('Sncg Gaba', 'Sncg Gaba'),\n", + " ('Sst Chodl Gaba', 'Sst Chodl Gaba'),\n", + " ('Sst Gaba', 'Sst Gaba'),\n", + " ('TMd-DMH Foxd2 Gaba', 'TMd-DMH Foxd2 Gaba'),\n", + " ('TMv-PMv Tbx3 Hist-Gaba', 'TMv-PMv Tbx3 Hist-Gaba'),\n", + " ('TRS-BAC Sln Glut', 'TRS-BAC Sln Glut'),\n", + " ('TU-ARH Otp Six6 Gaba', 'TU-ARH Otp Six6 Gaba'),\n", + " ('Tanycyte NN', 'Tanycyte NN'),\n", + " ('VLMC NN', 'VLMC NN'),\n", + " ('VMH Nr5a1 Glut', 'VMH Nr5a1 Glut'),\n", + " ('Vip Gaba', 'Vip Gaba'),\n", + " ('ZI Pax6 Gaba', 'ZI Pax6 Gaba')}" + ] + }, + { + "cell_type": "code", + "execution_count": 11, + "id": "b5255cf2", + "metadata": {}, + "outputs": [ + { + "data": { + "text/plain": [ + "350" + ] + }, + "execution_count": 11, + "metadata": {}, + "output_type": "execute_result" + } + ], + "source": [ + "len(pair_set - pair_set_15um)" + ] + }, + { + "cell_type": "code", + "execution_count": 12, + "id": "0fbca17f", + "metadata": {}, + "outputs": [ + { + "data": { + "text/plain": [ + "707" + ] + }, + "execution_count": 12, + "metadata": {}, + "output_type": "execute_result" + } + ], + "source": [ + "len(pair_set.union(pair_set_15um))" + ] + }, + { + "cell_type": "code", + "execution_count": 13, + "id": "44d65c2e", + "metadata": {}, + "outputs": [ + { + "data": { + "text/plain": [ + "54" + ] + }, + "execution_count": 13, + "metadata": {}, + "output_type": "execute_result" + } + ], + "source": [ + "len([p for p in (pair_set - pair_set_15um) if p[0] == p[1]])" + ] + }, + { + "cell_type": "code", + "execution_count": 14, + "id": "00148ed8", + "metadata": {}, + "outputs": [ + { + "data": { + "text/plain": [ + "65" + ] + }, + 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'subclass_receptor', 'LR_pair']].values]))" + ] + }, + { + "cell_type": "code", + "execution_count": 17, + "id": "9c95b688", + "metadata": {}, + "outputs": [ + { + "data": { + "text/html": [ + "
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subclass_ligandsubclass_receptorLR_pairN_contact_pairsmean_contact_lr_expexp_fractionfold_changepvalpval_adjusted
346032DCO Il22 Gly-GabaCB Granule GlutSEMA3B_NRP1_PLXNA46600.4325960.896970101.8460900.0000000.000000
109188VLMC NNCHOR NNWNT2_FZD8_LRP517410.0390520.695577100.9422450.0000000.000000
346061DCO Il22 Gly-GabaCB Granule GlutSEMA3C_NRP1_NRP26600.1697790.93636497.9989550.0000000.000000
109185VLMC NNCHOR NNWNT2_FZD5_LRP517410.0665150.65077595.6670800.0000000.000000
109092VLMC NNCHOR NNGDF10_ACVR1B_ACVR2A17410.2005190.78173588.9400200.0000000.000000
..............................
58687Astroependymal NNVLMC NNLAMB1_ITGA1_ITGB11290.2892400.7596902.1083730.0008830.009906
248562ABC NNEndo NNSEMA3F_NRP2_PLXNA12200.0661110.5818183.2423340.0008860.009937
54305Lymphoid NNVLMC NNSPP1_ITGA5_ITGB11710.0856240.7251462.6916030.0008870.009940
279143SCsg Pde5a GlutSC Tnnt1 Gli3 GabaJAG2_NOTCH42460.0182880.4471542.1813920.0008870.009945
39079Endo NNBAM NNLAMA5_ITGAV_ITGB810030.0122120.4496512.4720300.0008880.009948
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63140 rows × 9 columns

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"58687 129 0.289240 0.759690 2.108373 \n", + "248562 220 0.066111 0.581818 3.242334 \n", + "54305 171 0.085624 0.725146 2.691603 \n", + "279143 246 0.018288 0.447154 2.181392 \n", + "39079 1003 0.012212 0.449651 2.472030 \n", + "\n", + " pval pval_adjusted \n", + "346032 0.000000 0.000000 \n", + "109188 0.000000 0.000000 \n", + "346061 0.000000 0.000000 \n", + "109185 0.000000 0.000000 \n", + "109092 0.000000 0.000000 \n", + "... ... ... \n", + "58687 0.000883 0.009906 \n", + "248562 0.000886 0.009937 \n", + "54305 0.000887 0.009940 \n", + "279143 0.000887 0.009945 \n", + "39079 0.000888 0.009948 \n", + "\n", + "[63140 rows x 9 columns]" + ] + }, + "execution_count": 17, + "metadata": {}, + "output_type": "execute_result" + } + ], + "source": [ + "all_lr_df" + ] + }, + { + "cell_type": "code", + "execution_count": null, + "id": "5528b52f", + "metadata": {}, + "outputs": [], + "source": [] + }, + { + "cell_type": "code", + "execution_count": null, + "id": "e3227c61", + "metadata": {}, + "outputs": [], + "source": [] + } + ], + "metadata": { + "kernelspec": { + "display_name": "Python 3 (ipykernel)", + "language": "python", + "name": "python3" + }, + "language_info": { + "codemirror_mode": { + "name": "ipython", + "version": 3 + }, + "file_extension": ".py", + "mimetype": "text/x-python", + "name": "python", + "nbconvert_exporter": "python", + "pygments_lexer": "ipython3", + "version": "3.10.5" + } + }, + "nbformat": 4, + "nbformat_minor": 5 +} diff --git a/scripts/ligand_receptor_analysis/contact_enriched_gene_exp.ipynb b/scripts/ligand_receptor_analysis/contact_enriched_gene_exp.ipynb new file mode 100644 index 0000000..21ed632 --- /dev/null +++ b/scripts/ligand_receptor_analysis/contact_enriched_gene_exp.ipynb @@ -0,0 +1,2851 @@ +{ + "cells": [ + { + "cell_type": "code", + "execution_count": 1, + "id": "ebf2b1c4", + "metadata": {}, + "outputs": [], + "source": [ + "import os\n", + "\n", + "import numpy as np\n", + "import pandas as pd\n", + "import matplotlib.pyplot as plt\n", + "import scipy.stats\n", + "\n", + "import anndata\n", + "import scanpy as sc\n", + "sc.settings.n_jobs = 50\n", + "sc.settings.set_figure_params(dpi=180, dpi_save=300, frameon=False, figsize=(4, 4), fontsize=8, facecolor='white')" + ] + }, + { + "cell_type": "code", + "execution_count": 2, + "id": "3c8a5ddb", + "metadata": {}, + "outputs": [], + "source": [ + "def load_imputation_data(imputation_path, genes=None, cell_types=None, verbose=False):\n", + " '''Load the imputation results into an AnnData object with specified \n", + " genes and cell types.'''\n", + " # Load the table of gene partitions\n", + " gene_partition_df = pd.read_csv(os.path.join(imputation_path, 'gene_partition.csv')).set_index('gene')\n", + " \n", + " # Define which genes to load\n", + " if genes is None:\n", + " genes = np.array(gene_partition_df.index)\n", + " \n", + " # Define which partitions to load\n", + " partitions = np.unique(gene_partition_df['gene_partition'][gene_partition_df.index.isin(genes)])\n", + " \n", + " # Define which cell types to load\n", + " ct_paths = sorted([f for f in os.listdir(imputation_path) \n", + " if os.path.isdir(os.path.join(imputation_path, f))])\n", + " if not (cell_types is None):\n", + " ct_paths = np.intersect1d(ct_paths, [ct.replace('/', '-').replace(' ', '_') for ct in cell_types])\n", + " \n", + " # Load the specified cell types\n", + " adata_list = []\n", + " for ctp in ct_paths:\n", + " adata_ct_list = []\n", + " \n", + " # Load the specified genes\n", + " for p in partitions:\n", + " if verbose:\n", + " print(f\"Load {os.path.join(imputation_path, ctp, f'{p}.h5ad')}\")\n", + " \n", + " adata_ct_p = anndata.read_h5ad(os.path.join(imputation_path, ctp, f'{p}.h5ad'))\n", + " adata_ct_p = adata_ct_p[:, adata_ct_p.var.index.isin(genes)].copy()\n", + " adata_ct_list.append(adata_ct_p)\n", + " \n", + " adata_list.append(anndata.concat(adata_ct_list, axis=1, merge='first'))\n", + " \n", + " return anndata.concat(adata_list, axis=0)\n", + " " + ] + }, + { + "cell_type": "code", + "execution_count": 3, + "id": "de63c1b5", + "metadata": {}, + "outputs": [], + "source": [ + "import scipy.spatial\n", + "import diffxpy.api\n", + "import statsmodels.stats.multitest\n", + "\n", + "def calc_distances_from_cells(query_df, ref_df, slice_col='slice_id', xy_cols=['center_x', 'center_y'],\n", + " cis=False):\n", + " '''Calculate the distances from the reference cell types.'''\n", + "\n", + " # Get the coordinates of the query cells and reference cells\n", + " query_coords = np.array(query_df[xy_cols])\n", + " ref_coords = np.array(ref_df[xy_cols])\n", + " \n", + " # Calculate distances from query cells to reference cells slice-by-slice\n", + " all_dists = np.array([np.nan] * query_df.shape[0], dtype=np.float32) \n", + " slice_ids = np.unique(query_df[slice_col])\n", + " \n", + " for slice_id in slice_ids:\n", + " slice_mask_q = query_df[slice_col] == slice_id\n", + " slice_mask_r = ref_df[slice_col] == slice_id\n", + " \n", + " query_coords_slice = query_coords[slice_mask_q]\n", + " ref_coords_slice = ref_coords[slice_mask_r]\n", + " \n", + " # Skip if there is not enough cells in this slice\n", + " if (len(query_coords_slice) < 2) or (len(ref_coords_slice) < 2):\n", + " continue\n", + " \n", + " # Calculate the distances of K nearest neighbors\n", + " point_tree = scipy.spatial.cKDTree(ref_coords_slice)\n", + " \n", + " if cis:\n", + " distances, indices = point_tree.query(query_coords_slice, k=2)\n", + " distances = distances[:, 1]\n", + " else:\n", + " distances, indices = point_tree.query(query_coords_slice, k=1)\n", + " \n", + " all_dists[slice_mask_q] = distances\n", + " \n", + " return all_dists \n", + " \n", + "def calc_t_test_metrices_for_contact_cells(adata, dist_threshold):\n", + " group_label = np.array(['cell_type0'] * adata.shape[0])\n", + " group_label[adata.obs['dist_to_neighbor_type'] < dist_threshold] = 'cell_type1'\n", + " \n", + " print(f'N contact = {np.sum(group_label == \"cell_type1\")}')\n", + " print(f'N non-contact = {np.sum(group_label == \"cell_type0\")}')\n", + " \n", + " test_tt = diffxpy.api.test.t_test(data=adata, grouping=group_label)\n", + " \n", + " return test_tt.summary()" + ] + }, + { + "cell_type": "code", + "execution_count": 4, + "id": "a6d0793b", + "metadata": {}, + "outputs": [], + "source": [ + "def get_cell_ids_within_dist_range(adata_obs, query_ct, ref_ct, ct_col, min_dist, max_dist, cis=False):\n", + " query_df = adata_obs[adata_obs[ct_col] == query_ct]\n", + " ref_df = adata_obs[adata_obs[ct_col] == ref_ct]\n", + " dists = calc_distances_from_cells(query_df, ref_df, cis=cis)\n", + " \n", + " return np.array(query_df[(dists > min_dist) & (dists < max_dist)].index)" + ] + }, + { + "cell_type": "code", + "execution_count": 5, + "id": "a5afe38b", + "metadata": {}, + "outputs": [ + { + "name": "stdout", + "output_type": "stream", + "text": [ + "Cerebellum\n", + "Cortical_subplate\n", + "Fiber_tracts\n", + "Hippocampus\n", + "Isocortex\n", + "Medulla\n", + "Olfactory\n", + "Pallidum\n", + "Pons\n", + "Striatum\n", + "Thalamus\n", + "Ventricular_systems\n", + "anterior_HY\n", + "anterior_MB\n", + "posterior_HY\n", + "posterior_MB\n" + ] + } + ], + "source": [ + "cell_by_region_path = '/home/xingjiepan/data/whole_brain/analysis/20230808_cell_cell_contacts/cells_by_regions'\n", + "contact_path = '/home/xingjiepan/data/whole_brain/analysis/20230808_cell_cell_contacts/outputs_30um'\n", + "\n", + "\n", + "major_brain_regions = ['Cerebellum', 'Cortical_subplate', 'Fiber_tracts', 'Hippocampus',\n", + " 'Isocortex', 'Medulla', 'Olfactory', 'Pallidum', 'Pons', 'Striatum',\n", + " 'Thalamus', 'Ventricular_systems', 'anterior_HY', 'anterior_MB',\n", + " 'posterior_HY', 'posterior_MB']\n", + "\n", + "contact_pairs_by_region = {}\n", + "all_contact_pairs = []\n", + "contact_gene_enrichment_dicts = {}\n", + "obs_of_region_dict = {}\n", + "\n", + "for region in major_brain_regions: \n", + " print(region)\n", + " \n", + " close_contact_subclass_df = pd.read_csv(os.path.join(contact_path, f'{region}_close_contacts.csv'))\n", + "\n", + " contact_pairs_by_region[region] = [tuple(sorted(p)) for p in \n", + " close_contact_subclass_df[['cell_type1', 'cell_type2']].values]\n", + " \n", + " all_contact_pairs += contact_pairs_by_region[region]\n", + " \n", + " contact_gene_enrichment_dicts[region] = {'subclass_query': [], 'subclass_ref': [], 'gene': [], \n", + " 'contact_mean': [], 'control_mean': [], 'fold_change': [], 'pval': []}\n", + " \n", + " # Only keep the cells in the region\n", + " obs_of_region_dict[region] = pd.read_csv(os.path.join(cell_by_region_path, f'{region}.csv'), index_col=0)\n", + " \n", + "all_contact_pairs = set(all_contact_pairs)" + ] + }, + { + "cell_type": "code", + "execution_count": 6, + "id": "752c1069", + "metadata": {}, + "outputs": [], + "source": [ + "# Get the spatially contact cell types\n", + "close_contact_subclass_dict = {}\n", + "\n", + "for ct1, ct2 in all_contact_pairs:\n", + " for ct11, ct22 in [(ct1, ct2), (ct2, ct1)]:\n", + " if not (ct11 in close_contact_subclass_dict):\n", + " close_contact_subclass_dict[ct11] = []\n", + " \n", + " if ct22 in close_contact_subclass_dict[ct11]:\n", + " continue\n", + " \n", + " close_contact_subclass_dict[ct11].append(ct22)" + ] + }, + { + "cell_type": "code", + "execution_count": 7, + "id": "f0a561c7", + "metadata": {}, + "outputs": [], + "source": [ + "imputation_path = '/home/xingjiepan/data/whole_brain/analysis/20230723_final_integration/integration_workspace/gene_expression_imputation'\n", + "# Load the highly variable genes\n", + "import json\n", + "\n", + "with open('subclass_highly_variable_genes.json', 'r') as f:\n", + " hvg_dict = json.load(f)" + ] + }, + { + "cell_type": "code", + "execution_count": 8, + "id": "d0ebca7d", + "metadata": { + "scrolled": true + }, + "outputs": [ + { + "name": "stdout", + "output_type": "stream", + "text": [ + "0/293, OPC NN\n", + "1/293, Oligo NN\n", + "2/293, L5/6 IT TPE-ENT Glut\n", + "3/293, Sst Gaba\n", + "4/293, LSX Sall3 Lmo1 Gaba\n", + "5/293, AD Serpinb7 Glut\n", + "6/293, Endo NN\n" + ] + }, + { + "name": "stderr", + "output_type": "stream", + "text": [ + ":37: RuntimeWarning: invalid value encountered in divide\n", + ":37: RuntimeWarning: invalid value encountered in divide\n" + ] + }, + { + "name": "stdout", + "output_type": "stream", + "text": [ + "7/293, SC Tnnt1 Gli3 Gaba\n", + "8/293, SNc-VTA-RAmb Foxa1 Dopa\n", + "9/293, ENTmv-PA-COAp Glut\n" + ] + }, + { + "name": "stderr", + "output_type": "stream", + "text": [ + ":37: RuntimeWarning: invalid value encountered in divide\n" + ] + }, + { + "name": "stdout", + "output_type": "stream", + "text": [ + "10/293, PVHd-SBPV Six3 Prox1 Gaba\n", + "11/293, Peri NN\n" + ] + }, + { + "name": "stderr", + "output_type": "stream", + "text": [ + ":37: RuntimeWarning: divide by zero encountered in divide\n", + ":37: RuntimeWarning: divide by zero encountered in divide\n", + ":37: RuntimeWarning: divide by zero encountered in divide\n", + ":37: RuntimeWarning: invalid value encountered in divide\n", + ":37: RuntimeWarning: divide by zero encountered in divide\n" + ] + }, + { + "name": "stdout", + "output_type": "stream", + "text": [ + "12/293, OB Eomes Ms4a15 Glut\n", + "13/293, OB-STR-CTX Inh IMN\n", + "14/293, OB-out Frmd7 Gaba\n", + "15/293, PCG-PRNr Vsx2 Nkx6-1 Glut\n", + "16/293, CUN-PPN Evx2 Meis2 Glut\n", + "17/293, Vip Gaba\n", + "18/293, STR D1 Gaba\n", + "19/293, BAM NN\n" + ] + }, + { + "name": "stderr", + "output_type": "stream", + "text": [ + ":37: RuntimeWarning: invalid value encountered in divide\n", + ":37: RuntimeWarning: invalid value encountered in divide\n", + ":37: RuntimeWarning: divide by zero encountered in divide\n", + ":37: RuntimeWarning: divide by zero encountered in divide\n", + ":37: RuntimeWarning: invalid value encountered in divide\n", + ":37: RuntimeWarning: divide by zero encountered in divide\n", + ":37: RuntimeWarning: invalid value encountered in divide\n", + ":37: RuntimeWarning: invalid value encountered in divide\n", + ":37: RuntimeWarning: divide by zero encountered in divide\n", + ":37: RuntimeWarning: divide by zero encountered in divide\n", + ":37: RuntimeWarning: invalid value encountered in divide\n", + ":37: RuntimeWarning: divide by zero encountered in divide\n", + ":37: RuntimeWarning: divide by zero encountered in divide\n", + ":37: RuntimeWarning: divide by zero encountered in divide\n", + ":37: RuntimeWarning: invalid value encountered in divide\n", + ":37: RuntimeWarning: divide by zero encountered in divide\n", + ":37: RuntimeWarning: divide by zero encountered in divide\n", + ":37: RuntimeWarning: invalid value encountered in divide\n", + ":37: RuntimeWarning: divide by zero encountered in divide\n", + ":37: RuntimeWarning: divide by zero encountered in divide\n", + ":37: RuntimeWarning: divide by zero encountered in divide\n", + ":37: RuntimeWarning: divide by zero encountered in divide\n", + ":37: RuntimeWarning: invalid value encountered in divide\n", + ":37: RuntimeWarning: divide by zero encountered in divide\n", + ":37: RuntimeWarning: invalid value encountered in divide\n", + ":37: RuntimeWarning: divide by zero encountered in divide\n", + ":37: RuntimeWarning: invalid value encountered in divide\n", + ":37: RuntimeWarning: divide by zero encountered in divide\n", + ":37: RuntimeWarning: divide by zero encountered in divide\n", + ":37: RuntimeWarning: divide by zero encountered in divide\n", + ":37: RuntimeWarning: invalid value encountered in divide\n", + ":37: RuntimeWarning: divide by zero encountered in divide\n", + ":37: RuntimeWarning: invalid value encountered in divide\n", + ":37: RuntimeWarning: invalid value encountered in divide\n", + ":37: RuntimeWarning: divide by zero encountered in divide\n" + ] + }, + { + "name": "stdout", + "output_type": "stream", + "text": [ + "20/293, SCsg Pde5a Glut\n", + "21/293, Lamp5 Gaba\n", + "22/293, ABC NN\n" + ] + }, + { + "name": "stderr", + "output_type": "stream", + "text": [ + ":37: RuntimeWarning: invalid value encountered in divide\n", + ":37: RuntimeWarning: divide by zero encountered in divide\n", + ":37: RuntimeWarning: invalid value encountered in divide\n", + ":37: RuntimeWarning: divide by zero encountered in divide\n", + ":37: RuntimeWarning: invalid value encountered in divide\n", + ":37: RuntimeWarning: invalid value encountered in divide\n", + ":37: RuntimeWarning: invalid value encountered in divide\n", + ":37: RuntimeWarning: invalid value encountered in divide\n", + ":37: RuntimeWarning: divide by zero encountered in divide\n", + ":37: RuntimeWarning: invalid value encountered in divide\n", + ":37: RuntimeWarning: invalid value encountered in divide\n", + ":37: RuntimeWarning: invalid value encountered in divide\n", + ":37: RuntimeWarning: invalid value encountered in divide\n", + ":37: RuntimeWarning: invalid value encountered in divide\n", + ":37: RuntimeWarning: divide by zero encountered in divide\n", + ":37: RuntimeWarning: invalid value encountered in divide\n", + ":37: RuntimeWarning: invalid value encountered in divide\n", + ":37: RuntimeWarning: invalid value encountered in divide\n", + ":37: RuntimeWarning: invalid value encountered in divide\n", + ":37: RuntimeWarning: divide by zero encountered in divide\n", + ":37: RuntimeWarning: divide by zero encountered in divide\n", + ":37: RuntimeWarning: invalid value encountered in divide\n", + ":37: RuntimeWarning: invalid value encountered in divide\n", + ":37: RuntimeWarning: invalid value encountered in divide\n", + ":37: RuntimeWarning: divide by zero encountered in divide\n", + ":37: RuntimeWarning: divide by zero encountered in divide\n", + ":37: RuntimeWarning: invalid value encountered in divide\n", + ":37: RuntimeWarning: divide by zero encountered in divide\n", + ":37: RuntimeWarning: invalid value encountered in divide\n", + ":37: RuntimeWarning: divide by zero encountered in divide\n", + ":37: RuntimeWarning: invalid value encountered in divide\n", + ":37: RuntimeWarning: divide by zero encountered in divide\n", + ":37: RuntimeWarning: invalid value encountered in divide\n", + ":37: RuntimeWarning: divide by zero encountered in divide\n", + ":37: RuntimeWarning: invalid value encountered in divide\n", + ":37: RuntimeWarning: invalid value encountered in divide\n", + ":37: RuntimeWarning: divide by zero encountered in divide\n", + ":37: RuntimeWarning: invalid value encountered in divide\n", + ":37: RuntimeWarning: divide by zero encountered in divide\n" + ] + }, + { + "name": "stdout", + "output_type": "stream", + "text": [ + "23/293, Lymphoid NN\n" + ] + }, + { + "name": "stderr", + "output_type": "stream", + "text": [ + ":37: RuntimeWarning: divide by zero encountered in divide\n", + ":37: RuntimeWarning: invalid value encountered in divide\n", + ":37: RuntimeWarning: invalid value encountered in divide\n", + ":37: RuntimeWarning: divide by zero encountered in divide\n", + ":37: RuntimeWarning: invalid value encountered in divide\n", + ":37: RuntimeWarning: divide by zero encountered in divide\n", + ":37: RuntimeWarning: invalid value encountered in divide\n", + ":37: RuntimeWarning: invalid value encountered in divide\n", + ":37: RuntimeWarning: invalid value encountered in divide\n", + ":37: RuntimeWarning: invalid value encountered in divide\n", + ":37: RuntimeWarning: invalid value encountered in divide\n", + ":37: RuntimeWarning: divide by zero encountered in divide\n", + ":37: RuntimeWarning: invalid value encountered in divide\n", + ":37: RuntimeWarning: divide by zero encountered in divide\n", + ":37: RuntimeWarning: invalid value encountered in divide\n", + ":37: RuntimeWarning: divide by zero encountered in divide\n", + ":37: RuntimeWarning: invalid value encountered in divide\n", + ":37: RuntimeWarning: divide by zero encountered in divide\n", + ":37: RuntimeWarning: invalid value encountered in divide\n", + ":37: RuntimeWarning: divide by zero encountered in divide\n", + ":37: RuntimeWarning: invalid value encountered in divide\n", + ":37: RuntimeWarning: invalid value encountered in divide\n", + ":37: RuntimeWarning: divide by zero encountered in divide\n", + ":37: RuntimeWarning: invalid value encountered in divide\n", + ":37: RuntimeWarning: invalid value encountered in divide\n", + ":37: RuntimeWarning: divide by zero encountered in divide\n", + ":37: RuntimeWarning: invalid value encountered in divide\n", + ":37: RuntimeWarning: invalid value encountered in divide\n", + ":37: RuntimeWarning: divide by zero encountered in divide\n", + ":37: RuntimeWarning: invalid value encountered in divide\n", + ":37: RuntimeWarning: divide by zero encountered in divide\n", + ":37: RuntimeWarning: invalid value encountered in divide\n", + ":37: RuntimeWarning: divide by zero encountered in divide\n", + ":37: RuntimeWarning: invalid value encountered in divide\n", + ":37: RuntimeWarning: divide by zero encountered in divide\n", + ":37: RuntimeWarning: invalid value encountered in divide\n", + ":37: RuntimeWarning: divide by zero encountered in divide\n", + ":37: RuntimeWarning: invalid value encountered in divide\n", + ":37: RuntimeWarning: divide by zero encountered in divide\n", + ":37: RuntimeWarning: invalid value encountered in divide\n", + ":37: RuntimeWarning: divide by zero encountered in divide\n", + ":37: RuntimeWarning: invalid value encountered in divide\n", + ":37: RuntimeWarning: divide by zero encountered in divide\n", + ":37: RuntimeWarning: invalid value encountered in divide\n", + ":37: RuntimeWarning: divide by zero encountered in divide\n", + ":37: RuntimeWarning: invalid value encountered in divide\n", + ":37: RuntimeWarning: divide by zero encountered in divide\n", + ":37: RuntimeWarning: invalid value encountered in divide\n", + ":37: RuntimeWarning: divide by zero encountered in divide\n", + ":37: RuntimeWarning: invalid value encountered in divide\n", + ":37: RuntimeWarning: invalid value encountered in divide\n", + ":37: RuntimeWarning: invalid value encountered in divide\n", + ":37: RuntimeWarning: divide by zero encountered in divide\n", + ":37: RuntimeWarning: invalid value encountered in divide\n", + ":37: RuntimeWarning: divide by zero encountered in divide\n", + ":37: RuntimeWarning: invalid value encountered in divide\n", + ":37: RuntimeWarning: divide by zero encountered in divide\n", + ":37: RuntimeWarning: invalid value encountered in divide\n", + ":37: RuntimeWarning: divide by zero encountered in divide\n", + ":37: RuntimeWarning: invalid value encountered in divide\n", + ":37: RuntimeWarning: divide by zero encountered in divide\n", + ":37: RuntimeWarning: invalid value encountered in divide\n", + ":37: RuntimeWarning: divide by zero encountered in divide\n", + ":37: RuntimeWarning: invalid value encountered in divide\n", + ":37: RuntimeWarning: divide by zero encountered in divide\n", + ":37: RuntimeWarning: invalid value encountered in divide\n", + ":37: RuntimeWarning: divide by zero encountered in divide\n", + ":37: RuntimeWarning: invalid value encountered in divide\n", + ":37: RuntimeWarning: divide by zero encountered in divide\n", + ":37: RuntimeWarning: invalid value encountered in divide\n", + ":37: RuntimeWarning: divide by zero encountered in divide\n", + ":37: RuntimeWarning: invalid value encountered in divide\n", + ":37: RuntimeWarning: divide by zero encountered in divide\n", + ":37: RuntimeWarning: invalid value encountered in divide\n", + ":37: RuntimeWarning: divide by zero encountered in divide\n", + ":37: RuntimeWarning: invalid value encountered in divide\n", + ":37: RuntimeWarning: invalid value encountered in divide\n", + ":37: RuntimeWarning: divide by zero encountered in divide\n", + ":37: RuntimeWarning: invalid value encountered in divide\n", + ":37: RuntimeWarning: invalid value encountered in divide\n" + ] + }, + { + "name": "stdout", + "output_type": "stream", + "text": [ + "24/293, SPA-SPFm-SPFp-POL-PIL-PoT Sp9 Glut\n", + "25/293, Lamp5 Lhx6 Gaba\n", + "26/293, RHP-COA Ndnf Gaba\n", + "27/293, SCig-an-PPT Foxb1 Glut\n", + "28/293, MEA Slc17a7 Glut\n", + "29/293, LHA-AHN-PVH Otp Trh Glut\n", + "30/293, ARH-PVp Tbx3 Glut\n", + "31/293, DMH-LHA Gsx1 Gaba\n", + "32/293, AV Col27a1 Glut\n", + "33/293, CT SUB Glut\n", + "34/293, NP SUB Glut\n", + "35/293, MY Lhx1 Gly-Gaba\n", + "36/293, L2/3 IT CTX Glut\n", + "37/293, L2/3 IT RSP Glut\n", + "38/293, CA3 Glut\n", + "39/293, Pvalb chandelier Gaba\n", + "40/293, Microglia NN\n", + "41/293, Astro-NT NN\n", + "42/293, DCO UBC Glut\n", + "43/293, LSX Prdm12 Slit2 Gaba\n", + "44/293, Astro-OLF NN\n", + "45/293, SMC NN\n", + "46/293, VLMC NN\n" + ] + }, + { + "name": "stderr", + "output_type": "stream", + "text": [ + ":37: RuntimeWarning: divide by zero encountered in divide\n", + ":37: RuntimeWarning: invalid value encountered in divide\n", + ":37: RuntimeWarning: invalid value encountered in divide\n", + ":37: RuntimeWarning: divide by zero encountered in divide\n", + ":37: RuntimeWarning: invalid value encountered in divide\n", + ":37: RuntimeWarning: divide by zero encountered in divide\n", + ":37: RuntimeWarning: invalid value encountered in divide\n", + ":37: RuntimeWarning: invalid value encountered in divide\n", + ":37: RuntimeWarning: divide by zero encountered in divide\n", + ":37: RuntimeWarning: invalid value encountered in divide\n", + ":37: RuntimeWarning: invalid value encountered in divide\n", + ":37: RuntimeWarning: divide by zero encountered in divide\n", + ":37: RuntimeWarning: divide by zero encountered in divide\n", + ":37: RuntimeWarning: invalid value encountered in divide\n", + ":37: RuntimeWarning: invalid value encountered in divide\n" + ] + }, + { + "name": "stdout", + "output_type": "stream", + "text": [ + "47/293, PAG Pou4f2 Mesi2 Glut\n", + "48/293, OT D3 Folh1 Gaba\n", + "49/293, PAL-STR Gaba-Chol\n", + "50/293, SCs Pax7 Nfia Gaba\n", + "51/293, CB PLI Gly-Gaba\n", + "52/293, CBX Golgi Gly-Gaba\n" + ] + }, + { + "name": "stderr", + "output_type": "stream", + "text": [ + ":37: RuntimeWarning: divide by zero encountered in divide\n" + ] + }, + { + "name": "stdout", + "output_type": "stream", + "text": [ + "53/293, MPO-ADP Lhx8 Gaba\n", + "54/293, OEC NN\n" + ] + }, + { + "name": "stderr", + "output_type": "stream", + "text": [ + ":37: RuntimeWarning: invalid value encountered in divide\n", + ":37: RuntimeWarning: invalid value encountered in divide\n", + ":37: RuntimeWarning: invalid value encountered in divide\n", + ":37: RuntimeWarning: invalid value encountered in divide\n", + ":37: RuntimeWarning: invalid value encountered in divide\n", + ":37: RuntimeWarning: divide by zero encountered in divide\n", + ":37: RuntimeWarning: invalid value encountered in divide\n", + ":37: RuntimeWarning: divide by zero encountered in divide\n", + ":37: RuntimeWarning: invalid value encountered in divide\n", + ":37: RuntimeWarning: invalid value encountered in divide\n", + ":37: RuntimeWarning: invalid value encountered in divide\n", + ":37: RuntimeWarning: invalid value encountered in divide\n", + ":37: RuntimeWarning: invalid value encountered in divide\n", + ":37: RuntimeWarning: invalid value encountered in divide\n", + ":37: RuntimeWarning: invalid value encountered in divide\n", + ":37: RuntimeWarning: invalid value encountered in divide\n", + ":37: RuntimeWarning: invalid value encountered in divide\n", + ":37: RuntimeWarning: invalid value encountered in divide\n", + ":37: RuntimeWarning: divide by zero encountered in divide\n", + ":37: RuntimeWarning: invalid value encountered in divide\n" + ] + }, + { + "name": "stdout", + "output_type": "stream", + "text": [ + "55/293, TMv-PMv Tbx3 Hist-Gaba\n", + "56/293, AVPV-MEPO-SFO Tbr1 Glut\n" + ] + }, + { + "name": "stderr", + "output_type": "stream", + "text": [ + ":37: RuntimeWarning: divide by zero encountered in divide\n", + ":37: RuntimeWarning: invalid value encountered in divide\n", + ":37: RuntimeWarning: divide by zero encountered in divide\n" + ] + }, + { + "name": "stdout", + "output_type": "stream", + "text": [ + "57/293, SPVI-SPVC Sall3 Lhx1 Gly-Gaba\n", + "58/293, CLA-EPd-CTX Car3 Glut\n", + "59/293, PPY-PGRNl Vip Glyc-Gaba\n", + "60/293, ARH-PVp Tbx3 Gaba\n" + ] + }, + { + "name": "stderr", + "output_type": "stream", + "text": [ + ":37: RuntimeWarning: divide by zero encountered in divide\n", + ":37: RuntimeWarning: divide by zero encountered in divide\n" + ] + }, + { + "name": "stdout", + "output_type": "stream", + "text": [ + "61/293, TU-ARH Otp Six6 Gaba\n" + ] + }, + { + "name": "stderr", + "output_type": "stream", + "text": [ + ":37: RuntimeWarning: divide by zero encountered in divide\n" + ] + }, + { + "name": "stdout", + "output_type": "stream", + "text": [ + "62/293, PH-SUM Foxa1 Glut\n", + "63/293, CA1-ProS Glut\n", + "64/293, LDT-PCG St18 Gaba\n", + "65/293, LDT-PCG Vsx2 Lhx4 Glut\n", + "66/293, OB Dopa-Gaba\n", + "67/293, Astro-TE NN\n", + "68/293, TRS-BAC Sln Glut\n" + ] + }, + { + "name": "stderr", + "output_type": "stream", + "text": [ + ":37: RuntimeWarning: divide by zero encountered in divide\n", + ":37: RuntimeWarning: divide by zero encountered in divide\n" + ] + }, + { + "name": "stdout", + "output_type": "stream", + "text": [ + "69/293, CHOR NN\n" + ] + }, + { + "name": "stderr", + "output_type": "stream", + "text": [ + ":37: RuntimeWarning: invalid value encountered in divide\n", + ":37: RuntimeWarning: invalid value encountered in divide\n", + ":37: RuntimeWarning: invalid value encountered in divide\n", + ":37: RuntimeWarning: invalid value encountered in divide\n", + ":37: RuntimeWarning: invalid value encountered in divide\n", + ":37: RuntimeWarning: invalid value encountered in divide\n", + ":37: RuntimeWarning: invalid value encountered in divide\n", + ":37: RuntimeWarning: invalid value encountered in divide\n", + ":37: RuntimeWarning: invalid value encountered in divide\n", + ":37: RuntimeWarning: invalid value encountered in divide\n", + ":37: RuntimeWarning: invalid value encountered in divide\n", + ":37: RuntimeWarning: divide by zero encountered in divide\n", + ":37: RuntimeWarning: invalid value encountered in divide\n", + ":37: RuntimeWarning: invalid value encountered in divide\n", + ":37: RuntimeWarning: invalid value encountered in divide\n", + ":37: RuntimeWarning: invalid value encountered in divide\n", + ":37: RuntimeWarning: invalid value encountered in divide\n", + ":37: RuntimeWarning: invalid value encountered in divide\n", + ":37: RuntimeWarning: invalid value encountered in divide\n", + ":37: RuntimeWarning: invalid value encountered in divide\n", + ":37: RuntimeWarning: invalid value encountered in divide\n", + ":37: RuntimeWarning: invalid value encountered in divide\n", + ":37: RuntimeWarning: invalid value encountered in divide\n", + ":37: RuntimeWarning: invalid value encountered in divide\n", + ":37: RuntimeWarning: invalid value encountered in divide\n", + ":37: RuntimeWarning: invalid value encountered in divide\n", + ":37: RuntimeWarning: invalid value encountered in divide\n", + ":37: RuntimeWarning: invalid value encountered in divide\n", + ":37: RuntimeWarning: invalid value encountered in divide\n", + ":37: RuntimeWarning: divide by zero encountered in divide\n", + ":37: RuntimeWarning: invalid value encountered in divide\n", + ":37: RuntimeWarning: divide by zero encountered in divide\n", + ":37: RuntimeWarning: invalid value encountered in divide\n", + ":37: RuntimeWarning: divide by zero encountered in divide\n", + ":37: RuntimeWarning: invalid value encountered in divide\n", + ":37: RuntimeWarning: divide by zero encountered in divide\n", + ":37: RuntimeWarning: invalid value encountered in divide\n", + ":37: RuntimeWarning: divide by zero encountered in divide\n", + ":37: RuntimeWarning: invalid value encountered in divide\n", + ":37: RuntimeWarning: invalid value encountered in divide\n", + ":37: RuntimeWarning: invalid value encountered in divide\n", + ":37: RuntimeWarning: invalid value encountered in divide\n", + ":37: RuntimeWarning: divide by zero encountered in divide\n", + ":37: RuntimeWarning: invalid value encountered in divide\n", + ":37: RuntimeWarning: invalid value encountered in divide\n", + ":37: RuntimeWarning: invalid value encountered in divide\n", + ":37: RuntimeWarning: invalid value encountered in divide\n" + ] + }, + { + "name": "stdout", + "output_type": "stream", + "text": [ + "70/293, CB Granule Glut\n", + "71/293, STR-PAL Chst9 Gaba\n", + "72/293, BST-MPN Six3 Nrgn Gaba\n", + "73/293, OB Meis2 Thsd7b Gaba\n", + "74/293, L5 PPP Glut\n", + "75/293, NP PPP Glut\n", + "76/293, POR Spp1 Gly-Gaba\n" + ] + }, + { + "name": "stderr", + "output_type": "stream", + "text": [ + ":37: RuntimeWarning: divide by zero encountered in divide\n", + ":37: RuntimeWarning: invalid value encountered in divide\n" + ] + }, + { + "name": "stdout", + "output_type": "stream", + "text": [ + "77/293, L2 IT ENT-po Glut\n", + "78/293, IO Fgl2 Glut\n" + ] + }, + { + "name": "stderr", + "output_type": "stream", + "text": [ + ":37: RuntimeWarning: divide by zero encountered in divide\n" + ] + }, + { + "name": "stdout", + "output_type": "stream", + "text": [ + "79/293, LA-BLA-BMA-PA Glut\n", + "80/293, Astroependymal NN\n" + ] + }, + { + "name": "stderr", + "output_type": "stream", + "text": [ + ":37: RuntimeWarning: divide by zero encountered in divide\n", + ":37: RuntimeWarning: invalid value encountered in divide\n", + ":37: RuntimeWarning: divide by zero encountered in divide\n", + ":37: RuntimeWarning: invalid value encountered in divide\n", + ":37: RuntimeWarning: divide by zero encountered in divide\n", + ":37: RuntimeWarning: divide by zero encountered in divide\n", + ":37: RuntimeWarning: invalid value encountered in divide\n", + ":37: RuntimeWarning: divide by zero encountered in divide\n", + ":37: RuntimeWarning: invalid value encountered in divide\n", + ":37: RuntimeWarning: divide by zero encountered in divide\n", + ":37: RuntimeWarning: invalid value encountered in divide\n", + ":37: RuntimeWarning: divide by zero encountered in divide\n", + ":37: RuntimeWarning: invalid value encountered in divide\n", + ":37: RuntimeWarning: divide by zero encountered in divide\n", + ":37: RuntimeWarning: invalid value encountered in divide\n", + ":37: RuntimeWarning: divide by zero encountered in divide\n", + ":37: RuntimeWarning: invalid value encountered in divide\n", + ":37: RuntimeWarning: invalid value encountered in divide\n", + ":37: RuntimeWarning: divide by zero encountered in divide\n", + ":37: RuntimeWarning: invalid value encountered in divide\n", + ":37: RuntimeWarning: divide by zero encountered in divide\n", + ":37: RuntimeWarning: invalid value encountered in divide\n", + ":37: RuntimeWarning: divide by zero encountered in divide\n", + ":37: RuntimeWarning: invalid value encountered in divide\n", + ":37: RuntimeWarning: divide by zero encountered in divide\n", + ":37: RuntimeWarning: invalid value encountered in divide\n", + ":37: RuntimeWarning: divide by zero encountered in divide\n", + ":37: RuntimeWarning: invalid value encountered in divide\n", + ":37: RuntimeWarning: invalid value encountered in divide\n", + ":37: RuntimeWarning: divide by zero encountered in divide\n", + ":37: RuntimeWarning: invalid value encountered in divide\n", + ":37: RuntimeWarning: divide by zero encountered in divide\n", + ":37: RuntimeWarning: invalid value encountered in divide\n", + ":37: RuntimeWarning: divide by zero encountered in divide\n", + ":37: RuntimeWarning: invalid value encountered in divide\n", + ":37: RuntimeWarning: invalid value encountered in divide\n", + ":37: RuntimeWarning: divide by zero encountered in divide\n", + ":37: RuntimeWarning: invalid value encountered in divide\n", + ":37: RuntimeWarning: divide by zero encountered in divide\n", + ":37: RuntimeWarning: invalid value encountered in divide\n" + ] + }, + { + "name": "stdout", + "output_type": "stream", + "text": [ + "81/293, STR D1 Sema5a Gaba\n", + "82/293, MM-ant Foxb1 Glut\n" + ] + }, + { + "name": "stderr", + "output_type": "stream", + "text": [ + ":37: RuntimeWarning: divide by zero encountered in divide\n", + ":37: RuntimeWarning: invalid value encountered in divide\n", + ":37: RuntimeWarning: invalid value encountered in divide\n", + ":37: RuntimeWarning: divide by zero encountered in divide\n", + ":37: RuntimeWarning: invalid value encountered in divide\n" + ] + }, + { + "name": "stdout", + "output_type": "stream", + "text": [ + "83/293, L2/3 IT PIR-ENTl Glut\n", + "84/293, Astro-CB NN\n" + ] + }, + { + "name": "stderr", + "output_type": "stream", + "text": [ + ":37: RuntimeWarning: divide by zero encountered in divide\n", + ":37: RuntimeWarning: divide by zero encountered in divide\n", + ":37: RuntimeWarning: invalid value encountered in divide\n" + ] + }, + { + "name": "stdout", + "output_type": "stream", + "text": [ + "85/293, PVR Six3 Sox3 Gaba\n" + ] + }, + { + "name": "stderr", + "output_type": "stream", + "text": [ + ":37: RuntimeWarning: divide by zero encountered in divide\n" + ] + }, + { + "name": "stdout", + "output_type": "stream", + "text": [ + "86/293, PVpo-VMPO-MPN Hmx2 Gaba\n", + "87/293, PB-PSV Phox2b Glut\n" + ] + }, + { + "name": "stderr", + "output_type": "stream", + "text": [ + ":37: RuntimeWarning: divide by zero encountered in divide\n", + ":37: RuntimeWarning: invalid value encountered in divide\n" + ] + }, + { + "name": "stdout", + "output_type": "stream", + "text": [ + "88/293, PRT Tcf7l2 Gaba\n", + "89/293, SC Lef1 Otx2 Gaba\n", + "90/293, CBX MLI Megf11 Gaba\n", + "91/293, CBX MLI Cdh22 Gaba\n", + "92/293, SC Otx2 Gcnt4 Gaba\n" + ] + }, + { + "name": "stderr", + "output_type": "stream", + "text": [ + ":37: RuntimeWarning: invalid value encountered in divide\n", + ":37: RuntimeWarning: invalid value encountered in divide\n" + ] + }, + { + "name": "stdout", + "output_type": "stream", + "text": [ + "93/293, SCsg Gabrr2 Gaba\n", + "94/293, CA2-FC-IG Glut\n", + "95/293, LDT Fgf7 Gaba\n" + ] + }, + { + "name": "stderr", + "output_type": "stream", + "text": [ + ":37: RuntimeWarning: divide by zero encountered in divide\n" + ] + }, + { + "name": "stdout", + "output_type": "stream", + "text": [ + "96/293, STN-PSTN Pitx2 Glut\n", + "97/293, DG-PIR Ex IMN\n" + ] + }, + { + "name": "stderr", + "output_type": "stream", + "text": [ + ":37: RuntimeWarning: divide by zero encountered in divide\n", + ":37: RuntimeWarning: divide by zero encountered in divide\n", + ":37: RuntimeWarning: divide by zero encountered in divide\n", + ":37: RuntimeWarning: invalid value encountered in divide\n", + ":37: RuntimeWarning: divide by zero encountered in divide\n", + ":37: RuntimeWarning: invalid value encountered in divide\n" + ] + }, + { + "name": "stdout", + "output_type": "stream", + "text": [ + "98/293, DMH Nkx2-4 Glut\n", + "99/293, TMd-DMH Foxd2 Gaba\n", + "100/293, MH Tac2 Glut\n", + "101/293, SPVC Ccdc172 Glut\n" + ] + }, + { + "name": "stderr", + "output_type": "stream", + "text": [ + ":37: RuntimeWarning: divide by zero encountered in divide\n", + ":37: RuntimeWarning: invalid value encountered in divide\n", + ":37: RuntimeWarning: divide by zero encountered in divide\n", + ":37: RuntimeWarning: invalid value encountered in divide\n", + ":37: RuntimeWarning: invalid value encountered in divide\n" + ] + }, + { + "name": "stdout", + "output_type": "stream", + "text": [ + "102/293, SPVI-SPVC Tlx3 Ebf3 Glut\n", + "103/293, SPVI-SPVC Sall3 Nfib Gly-Gaba\n", + "104/293, NLL Gata3 Gly-Gaba\n", + "105/293, L6b/CT ENT Glut\n", + "106/293, IA Mgp Gaba\n" + ] + }, + { + "name": "stderr", + "output_type": "stream", + "text": [ + ":37: RuntimeWarning: divide by zero encountered in divide\n", + ":37: RuntimeWarning: invalid value encountered in divide\n", + ":37: RuntimeWarning: divide by zero encountered in divide\n", + ":37: RuntimeWarning: invalid value encountered in divide\n" + ] + }, + { + "name": "stdout", + "output_type": "stream", + "text": [ + "107/293, OB Trdn Gaba\n" + ] + }, + { + "name": "stderr", + "output_type": "stream", + "text": [ + ":37: RuntimeWarning: divide by zero encountered in divide\n" + ] + }, + { + "name": "stdout", + "output_type": "stream", + "text": [ + "108/293, IT EP-CLA Glut\n", + "109/293, STR D2 Gaba\n", + "110/293, Ependymal NN\n" + ] + }, + { + "name": "stderr", + "output_type": "stream", + "text": [ + ":37: RuntimeWarning: divide by zero encountered in divide\n", + ":37: RuntimeWarning: invalid value encountered in divide\n", + ":37: RuntimeWarning: divide by zero encountered in divide\n", + ":37: RuntimeWarning: invalid value encountered in divide\n", + ":37: RuntimeWarning: divide by zero encountered in divide\n", + ":37: RuntimeWarning: invalid value encountered in divide\n", + ":37: RuntimeWarning: divide by zero encountered in divide\n", + ":37: RuntimeWarning: invalid value encountered in divide\n", + ":37: RuntimeWarning: divide by zero encountered in divide\n", + ":37: RuntimeWarning: invalid value encountered in divide\n", + ":37: RuntimeWarning: divide by zero encountered in divide\n", + ":37: RuntimeWarning: invalid value encountered in divide\n", + ":37: RuntimeWarning: divide by zero encountered in divide\n", + ":37: RuntimeWarning: divide by zero encountered in divide\n", + ":37: RuntimeWarning: divide by zero encountered in divide\n", + ":37: RuntimeWarning: divide by zero encountered in divide\n", + ":37: RuntimeWarning: divide by zero encountered in divide\n" + ] + }, + { + "name": "stdout", + "output_type": "stream", + "text": [ + "111/293, PRP-NI-PRNc-GRN Otp Glut\n" + ] + }, + { + "name": "stderr", + "output_type": "stream", + "text": [ + ":37: RuntimeWarning: invalid value encountered in divide\n", + ":37: RuntimeWarning: invalid value encountered in divide\n" + ] + }, + { + "name": "stdout", + "output_type": "stream", + "text": [ + "112/293, DMH Hmx2 Gaba\n", + "113/293, L6 IT CTX Glut\n", + "114/293, L5 NP CTX Glut\n", + "115/293, DG Glut\n", + "116/293, L5 ET CTX Glut\n", + "117/293, Pvalb Gaba\n", + "118/293, PARN-MDRNd-NTS Gbx2 Gly-Gaba\n", + "119/293, PH Pitx2 Glut\n", + "120/293, IC Six3 En2 Gaba\n", + "121/293, MRN-VTN-PPN Pax5 Cdh23 Gaba\n", + "122/293, PAG Pou4f1 Ebf2 Glut\n", + "123/293, Hypendymal NN\n" + ] + }, + { + "name": "stderr", + "output_type": "stream", + "text": [ + ":37: RuntimeWarning: divide by zero encountered in divide\n", + ":37: RuntimeWarning: invalid value encountered in divide\n", + ":37: RuntimeWarning: divide by zero encountered in divide\n", + ":37: RuntimeWarning: invalid value encountered in divide\n", + ":37: RuntimeWarning: divide by zero encountered in divide\n", + ":37: RuntimeWarning: invalid value encountered in divide\n", + ":37: RuntimeWarning: divide by zero encountered in divide\n", + ":37: RuntimeWarning: invalid value encountered in divide\n", + ":38: RuntimeWarning: Precision loss occurred in moment calculation due to catastrophic cancellation. This occurs when the data are nearly identical. Results may be unreliable.\n" + ] + }, + { + "name": "stdout", + "output_type": "stream", + "text": [ + "124/293, PRC-PAG Pax6 Glut\n", + "125/293, PPN-CUN-PCG Otp En1 Gaba\n", + "126/293, PB Pax5 Glut\n" + ] + }, + { + "name": "stderr", + "output_type": "stream", + "text": [ + ":37: RuntimeWarning: invalid value encountered in divide\n" + ] + }, + { + "name": "stdout", + "output_type": "stream", + "text": [ + "127/293, SCH Six6 Cdc14a Gaba\n", + "128/293, L4/5 IT CTX Glut\n", + "129/293, MEA-BST Lhx6 Nr2e1 Gaba\n", + "130/293, MB-ant-ve Dmrta2 Glut\n", + "131/293, Tanycyte NN\n" + ] + }, + { + "name": "stderr", + "output_type": "stream", + "text": [ + ":37: RuntimeWarning: divide by zero encountered in divide\n", + ":37: RuntimeWarning: invalid value encountered in divide\n", + ":37: RuntimeWarning: divide by zero encountered in divide\n", + ":37: RuntimeWarning: divide by zero encountered in divide\n", + ":37: RuntimeWarning: invalid value encountered in divide\n", + ":37: RuntimeWarning: divide by zero encountered in divide\n", + ":37: RuntimeWarning: divide by zero encountered in divide\n", + ":37: RuntimeWarning: invalid value encountered in divide\n", + "/home/xingjiepan/Softwares/conda/anaconda3/envs/wb_analysis/lib/python3.10/site-packages/numpy/core/fromnumeric.py:3432: RuntimeWarning: Mean of empty slice.\n", + " return _methods._mean(a, axis=axis, dtype=dtype,\n", + "/home/xingjiepan/Softwares/conda/anaconda3/envs/wb_analysis/lib/python3.10/site-packages/numpy/core/_methods.py:182: RuntimeWarning: invalid value encountered in divide\n", + " ret = um.true_divide(\n", + ":37: RuntimeWarning: divide by zero encountered in divide\n", + ":37: RuntimeWarning: invalid value encountered in divide\n", + ":37: RuntimeWarning: divide by zero encountered in divide\n", + ":37: RuntimeWarning: invalid value encountered in divide\n", + ":37: RuntimeWarning: divide by zero encountered in divide\n", + ":37: RuntimeWarning: divide by zero encountered in divide\n", + ":37: RuntimeWarning: invalid value encountered in divide\n", + ":37: RuntimeWarning: divide by zero encountered in divide\n" + ] + }, + { + "name": "stdout", + "output_type": "stream", + "text": [ + "132/293, COAp Grxcr2 Glut\n", + "133/293, PG-TRN-LRN Fat2 Glut\n", + "134/293, PAG Pou4f2 Glut\n", + "135/293, RT-ZI Gnb3 Gaba\n", + "136/293, LH Pou4f1 Sox1 Glut\n", + "137/293, CS-PRNr-DR En1 Sox2 Gaba\n", + "138/293, PB Evx2 Glut\n", + "139/293, LSX Sall3 Pax6 Gaba\n", + "140/293, PH-LHA Foxb1 Glut\n", + "141/293, MV-SPIV Zic4 Neurod2 Glut\n", + "142/293, LSX Otx2 Gaba\n", + "143/293, SCs Dmbx1 Gaba\n", + "144/293, MS-SF Bsx Glut\n", + "145/293, NLL-SOC Spp1 Glut\n" + ] + }, + { + "name": "stderr", + "output_type": "stream", + "text": [ + ":37: RuntimeWarning: divide by zero encountered in divide\n", + ":37: RuntimeWarning: invalid value encountered in divide\n", + ":37: RuntimeWarning: divide by zero encountered in divide\n", + ":37: RuntimeWarning: invalid value encountered in divide\n" + ] + }, + { + "name": "stdout", + "output_type": "stream", + "text": [ + "146/293, DCO Il22 Gly-Gaba\n", + "147/293, LGv-ZI Otx2 Gaba\n" + ] + }, + { + "name": "stderr", + "output_type": "stream", + "text": [ + ":37: RuntimeWarning: divide by zero encountered in divide\n" + ] + }, + { + "name": "stdout", + "output_type": "stream", + "text": [ + "148/293, GPe-SI Sox6 Cyp26b1 Gaba\n", + "149/293, L4 RSP-ACA Glut\n", + "150/293, SCop Sln Glut\n", + "151/293, STR Lhx8 Gaba\n", + "152/293, PH-ant-LHA Otp Bsx Glut\n", + "153/293, CBN Dmbx1 Gaba\n", + "154/293, ZI Pax6 Gaba\n", + "155/293, B-PB Nr4a2 Glut\n", + "156/293, ACB-BST-FS D1 Gaba\n", + "157/293, LSX Nkx2-1 Gaba\n", + "158/293, Sncg Gaba\n", + "159/293, SI-MPO-LPO Lhx8 Gaba\n", + "160/293, L6b CTX Glut\n", + "161/293, PAG Pou4f1 Bnc2 Glut\n", + "162/293, CEA-BST Ebf1 Pdyn Gaba\n", + "163/293, PVH-SO-PVa Otp Glut\n", + "164/293, LDT-PCG-CS Gata3 Lhx1 Gaba\n", + "165/293, L6 CT CTX Glut\n", + "166/293, BST-po Iigp1 Glut\n" + ] + }, + { + "name": "stderr", + "output_type": "stream", + "text": [ + ":37: RuntimeWarning: divide by zero encountered in divide\n", + ":37: RuntimeWarning: invalid value encountered in divide\n", + ":37: RuntimeWarning: divide by zero encountered in divide\n", + ":37: RuntimeWarning: invalid value encountered in divide\n", + ":37: RuntimeWarning: divide by zero encountered in divide\n", + ":37: RuntimeWarning: invalid value encountered in divide\n", + ":37: RuntimeWarning: divide by zero encountered in divide\n", + ":37: RuntimeWarning: invalid value encountered in divide\n" + ] + }, + { + "name": "stdout", + "output_type": "stream", + "text": [ + "167/293, VCO Mafa Meis2 Glut\n" + ] + }, + { + "name": "stderr", + "output_type": "stream", + "text": [ + ":37: RuntimeWarning: divide by zero encountered in divide\n", + ":37: RuntimeWarning: invalid value encountered in divide\n", + ":37: RuntimeWarning: invalid value encountered in divide\n", + ":37: RuntimeWarning: divide by zero encountered in divide\n", + ":37: RuntimeWarning: invalid value encountered in divide\n", + ":37: RuntimeWarning: divide by zero encountered in divide\n", + ":37: RuntimeWarning: invalid value encountered in divide\n", + ":37: RuntimeWarning: divide by zero encountered in divide\n", + ":37: RuntimeWarning: invalid value encountered in divide\n", + ":37: RuntimeWarning: divide by zero encountered in divide\n", + ":37: RuntimeWarning: invalid value encountered in divide\n" + ] + }, + { + "name": "stdout", + "output_type": "stream", + "text": [ + "168/293, SBPV-PVa Six6 Satb2 Gaba\n", + "169/293, SNr-VTA Pax5 Npas1 Gaba\n", + "170/293, PRNc-NI-SG-RPO Vsx2 Nr4a2 Glut\n", + "171/293, LHA Pmch Glut\n" + ] + }, + { + "name": "stderr", + "output_type": "stream", + "text": [ + ":37: RuntimeWarning: invalid value encountered in divide\n" + ] + }, + { + "name": "stdout", + "output_type": "stream", + "text": [ + "172/293, NDB-SI-ant Prdm12 Gaba\n", + "173/293, PSV Pvalb Lhx2 Glut\n", + "174/293, CBX Purkinje Gaba\n", + "175/293, IF-RL-CLI-PAG Foxa1 Glut\n", + "176/293, Sst Chodl Gaba\n", + "177/293, AHN-RCH-LHA Otp Fezf1 Glut\n", + "178/293, IC Tfap2d Maf Glut\n", + "179/293, Bergmann NN\n", + "180/293, SCig Foxb1 Glut\n", + "181/293, NTS Dbh Glut\n" + ] + }, + { + "name": "stderr", + "output_type": "stream", + "text": [ + ":37: RuntimeWarning: divide by zero encountered in divide\n", + ":37: RuntimeWarning: invalid value encountered in divide\n", + ":37: RuntimeWarning: invalid value encountered in divide\n", + ":37: RuntimeWarning: divide by zero encountered in divide\n" + ] + }, + { + "name": "stdout", + "output_type": "stream", + "text": [ + "182/293, NTS-PARN Neurod2 Gly-Gaba\n" + ] + }, + { + "name": "stderr", + "output_type": "stream", + "text": [ + ":37: RuntimeWarning: divide by zero encountered in divide\n", + ":37: RuntimeWarning: divide by zero encountered in divide\n", + ":37: RuntimeWarning: divide by zero encountered in divide\n" + ] + }, + { + "name": "stdout", + "output_type": "stream", + "text": [ + "183/293, SC Bnc2 Glut\n", + "184/293, LDT Vsx2 Nkx6-1 Nfib Glut\n", + "185/293, NTS Phox2b Glut\n", + "186/293, SC-PAG Lef1 Emx2 Gaba\n", + "187/293, NDB-SI-MA-STRv Lhx8 Gaba\n", + "188/293, DC NN\n" + ] + }, + { + "name": "stderr", + "output_type": "stream", + "text": [ + ":37: RuntimeWarning: divide by zero encountered in divide\n", + ":37: RuntimeWarning: invalid value encountered in divide\n", + ":37: RuntimeWarning: divide by zero encountered in divide\n", + ":37: RuntimeWarning: invalid value encountered in divide\n", + ":37: RuntimeWarning: divide by zero encountered in divide\n", + ":37: RuntimeWarning: invalid value encountered in divide\n", + ":37: RuntimeWarning: divide by zero encountered in divide\n", + ":37: RuntimeWarning: invalid value encountered in divide\n", + ":37: RuntimeWarning: divide by zero encountered in divide\n", + ":37: RuntimeWarning: invalid value encountered in divide\n", + ":37: RuntimeWarning: divide by zero encountered in divide\n", + ":37: RuntimeWarning: invalid value encountered in divide\n", + ":37: RuntimeWarning: divide by zero encountered in divide\n", + ":37: RuntimeWarning: invalid value encountered in divide\n", + ":37: RuntimeWarning: divide by zero encountered in divide\n", + ":37: RuntimeWarning: invalid value encountered in divide\n", + ":37: RuntimeWarning: divide by zero encountered in divide\n", + ":37: RuntimeWarning: invalid value encountered in divide\n", + ":37: RuntimeWarning: divide by zero encountered in divide\n", + ":37: RuntimeWarning: invalid value encountered in divide\n", + ":37: RuntimeWarning: divide by zero encountered in divide\n", + ":37: RuntimeWarning: invalid value encountered in divide\n", + ":37: RuntimeWarning: divide by zero encountered in divide\n", + ":37: RuntimeWarning: invalid value encountered in divide\n", + ":37: RuntimeWarning: divide by zero encountered in divide\n", + ":37: RuntimeWarning: invalid value encountered in divide\n", + ":37: RuntimeWarning: divide by zero encountered in divide\n", + ":37: RuntimeWarning: invalid value encountered in divide\n" + ] + }, + { + "name": "stdout", + "output_type": "stream", + "text": [ + "189/293, DTN-LDT-IPN Otp Pax3 Gaba\n", + "190/293, STR Prox1 Lhx6 Gaba\n", + "191/293, CS-PRNr-PCG Tmem163 Otp Gaba\n", + "192/293, L6b EPd Glut\n", + "193/293, MRN-PPN-CUN Pax8 Gaba\n", + "194/293, MB-MY Tph2 Glut-Sero\n", + "195/293, PVHd-DMH Lhx6 Gaba\n", + "196/293, PMv-TMv Pitx2 Glut\n", + "197/293, OB-in Frmd7 Gaba\n", + "198/293, CEA-BST Six3 Cyp26b1 Gaba\n", + "199/293, SI-MA-LPO-LHA Skor1 Glut\n", + "200/293, MV Nkx6-1 Gly-Gaba\n", + "201/293, Pineal Crx Glut\n" + ] + }, + { + "name": "stderr", + "output_type": "stream", + "text": [ + ":37: RuntimeWarning: divide by zero encountered in divide\n", + ":37: RuntimeWarning: invalid value encountered in divide\n", + ":37: RuntimeWarning: divide by zero encountered in divide\n", + ":37: RuntimeWarning: invalid value encountered in divide\n", + ":37: RuntimeWarning: divide by zero encountered in divide\n", + ":37: RuntimeWarning: invalid value encountered in divide\n" + ] + }, + { + "name": "stdout", + "output_type": "stream", + "text": [ + "202/293, MEA Otp Foxp2 Glut\n", + "203/293, PAS-MV Ebf2 Gly-Gaba\n", + "204/293, NI-RPO Gata3 Nr4a2 Gaba\n", + "205/293, PH-an Pitx2 Glut\n", + "206/293, DMH Prdm13 Gaba\n", + "207/293, L2/3 IT PPP Glut\n", + "208/293, PF Fzd5 Glut\n", + "209/293, MEA-BST Lhx6 Sp9 Gaba\n", + "210/293, PGRN-PARN-MDRN Hoxb5 Glut\n", + "211/293, HPF CR Glut\n", + "212/293, COAa-PAA-MEA Barhl2 Glut\n", + "213/293, CEA-AAA-BST Six3 Sp9 Gaba\n", + "214/293, CU-ECU-SPVI Foxb1 Glut\n", + "215/293, PAG Pou4f3 Glut\n", + "216/293, MDRN Hoxb5 Ebf2 Gly-Gaba\n", + "217/293, L2 IT PPP-APr Glut\n", + "218/293, LGv-SPFp-SPFm Nkx2-2 Tcf7l2 Gaba\n", + "219/293, MV-SPIV-PRP Dmbx1 Gly-Gaba\n", + "220/293, CUN Evx2 Lhx2 Glut\n", + "221/293, PAG-RN Nkx2-2 Otx1 Gaba\n", + "222/293, LSX Prdm12 Zeb2 Gaba\n", + "223/293, MEA-COA-BMA Ccdc42 Glut\n", + "224/293, PRP Otp Gly-Gaba\n", + "225/293, SUB-ProS Glut\n", + "226/293, SPVO Mafa Meis2 Glut\n" + ] + }, + { + "name": "stderr", + "output_type": "stream", + "text": [ + ":37: RuntimeWarning: divide by zero encountered in divide\n", + ":37: RuntimeWarning: invalid value encountered in divide\n", + ":37: RuntimeWarning: divide by zero encountered in divide\n", + ":37: RuntimeWarning: invalid value encountered in divide\n" + ] + }, + { + "name": "stdout", + "output_type": "stream", + "text": [ + "227/293, LHA Barhl2 Glut\n", + "228/293, CS-RPO Meis2 Gaba\n", + "229/293, PAG-MRN Pou3f1 Glut\n", + "230/293, PB-NTS Phox2b Ebf3 Lmx1b Glut\n", + "231/293, PAG-MRN-RN Foxa2 Gaba\n", + "232/293, CBN Neurod2 Pvalb Glut\n" + ] + }, + { + "name": "stderr", + "output_type": "stream", + "text": [ + ":37: RuntimeWarning: divide by zero encountered in divide\n", + ":37: RuntimeWarning: divide by zero encountered in divide\n", + ":37: RuntimeWarning: divide by zero encountered in divide\n" + ] + }, + { + "name": "stdout", + "output_type": "stream", + "text": [ + "233/293, L5 IT CTX Glut\n", + "234/293, ND-INC Foxd2 Glut\n" + ] + }, + { + "name": "stderr", + "output_type": "stream", + "text": [ + ":37: RuntimeWarning: divide by zero encountered in divide\n", + ":37: RuntimeWarning: divide by zero encountered in divide\n" + ] + }, + { + "name": "stdout", + "output_type": "stream", + "text": [ + "235/293, PRC-PAG Tcf7l2 Irx2 Glut\n" + ] + }, + { + "name": "stderr", + "output_type": "stream", + "text": [ + ":37: RuntimeWarning: divide by zero encountered in divide\n", + ":37: RuntimeWarning: divide by zero encountered in divide\n" + ] + }, + { + "name": "stdout", + "output_type": "stream", + "text": [ + "236/293, PVT-PT Ntrk1 Glut\n", + "237/293, VMH Fezf1 Glut\n", + "238/293, MM Foxb1 Glut\n", + "239/293, SI-MA-ACB Ebf1 Bnc2 Gaba\n", + "240/293, SCop Pou4f2 Neurod2 Glut\n", + "241/293, MEA-BST Sox6 Gaba\n" + ] + }, + { + "name": "stderr", + "output_type": "stream", + "text": [ + ":37: RuntimeWarning: divide by zero encountered in divide\n", + ":37: RuntimeWarning: invalid value encountered in divide\n" + ] + }, + { + "name": "stdout", + "output_type": "stream", + "text": [ + "242/293, VMH Nr5a1 Glut\n", + "243/293, TH Prkcd Grin2c Glut\n", + "244/293, RPA Pax6 Hoxb5 Gly-Gaba\n" + ] + }, + { + "name": "stderr", + "output_type": "stream", + "text": [ + ":37: RuntimeWarning: divide by zero encountered in divide\n", + ":37: RuntimeWarning: divide by zero encountered in divide\n" + ] + }, + { + "name": "stdout", + "output_type": "stream", + "text": [ + "245/293, PB Sst Gly-Gaba\n", + "246/293, PDTg-PCG Pax6 Gaba\n", + "247/293, IPN-LDT Vsx2 Nkx6-1 Glut\n", + "248/293, L2/3 IT ENT Glut\n", + "249/293, SPVC Mafa Glut\n", + "250/293, SPVC Nmu Glut\n", + "251/293, PRNc Otp Gly-Gaba\n", + "252/293, CEA-BST Rai14 Pdyn Crh Gaba\n", + "253/293, IT AON-TT-DP Glut\n", + "254/293, PAG-SC Pou4f1 Zic1 Glut\n", + "255/293, PAG-MRN Tfap2b Glut\n", + "256/293, LDT-DTN Gata3 Nfix Gaba\n", + "257/293, APN C1ql2 Glut\n", + "258/293, PAG-PPN Pax5 Sox21 Gaba\n", + "259/293, SCm-PAG Cdh23 Gaba\n", + "260/293, PDTg Otp Shroom3 Gaba\n" + ] + }, + { + "name": "stderr", + "output_type": "stream", + "text": [ + ":37: RuntimeWarning: divide by zero encountered in divide\n", + ":37: RuntimeWarning: invalid value encountered in divide\n" + ] + }, + { + "name": "stdout", + "output_type": "stream", + "text": [ + "261/293, PB Lmx1a Glut\n", + "262/293, PAG-ND-PCG Onecut1 Gaba\n" + ] + }, + { + "name": "stderr", + "output_type": "stream", + "text": [ + ":37: RuntimeWarning: divide by zero encountered in divide\n", + ":37: RuntimeWarning: invalid value encountered in divide\n" + ] + }, + { + "name": "stdout", + "output_type": "stream", + "text": [ + "263/293, APN C1ql4 Glut\n", + "264/293, PAG Ucn Glut\n" + ] + }, + { + "name": "stderr", + "output_type": "stream", + "text": [ + ":37: RuntimeWarning: divide by zero encountered in divide\n", + ":37: RuntimeWarning: invalid value encountered in divide\n" + ] + }, + { + "name": "stdout", + "output_type": "stream", + "text": [ + "265/293, AHN-SBPV-PVHd Pdrm12 Gaba\n", + "266/293, PSV Lmx1a Trpv6 Glut\n" + ] + }, + { + "name": "stderr", + "output_type": "stream", + "text": [ + ":37: RuntimeWarning: divide by zero encountered in divide\n", + ":37: RuntimeWarning: invalid value encountered in divide\n" + ] + }, + { + "name": "stdout", + "output_type": "stream", + "text": [ + "267/293, SCdg-PAG Tfap2b Glut\n", + "268/293, DMH-LHA Vgll2 Glut\n", + "269/293, IPN Otp Crisp1 Gaba\n", + "270/293, MY Prox1 Lmo7 Gly-Gaba\n", + "271/293, SCig Tfap2b Chrnb3 Glut\n", + "272/293, ADP-MPO Trp73 Glut\n", + "273/293, BST Tac2 Gaba\n", + "274/293, MEA-BST Lhx6 Nfib Gaba\n", + "275/293, HB Calcb Chol\n" + ] + }, + { + "name": "stderr", + "output_type": "stream", + "text": [ + ":37: RuntimeWarning: invalid value encountered in divide\n", + ":37: RuntimeWarning: divide by zero encountered in divide\n", + ":37: RuntimeWarning: invalid value encountered in divide\n" + ] + }, + { + "name": "stdout", + "output_type": "stream", + "text": [ + "276/293, PRNc Prox1 Brs3 Gly-Gaba\n" + ] + }, + { + "name": "stderr", + "output_type": "stream", + "text": [ + ":37: RuntimeWarning: divide by zero encountered in divide\n", + ":37: RuntimeWarning: invalid value encountered in divide\n" + ] + }, + { + "name": "stdout", + "output_type": "stream", + "text": [ + "277/293, PDTg Otp Olig3 Gaba\n" + ] + }, + { + "name": "stderr", + "output_type": "stream", + "text": [ + ":37: RuntimeWarning: divide by zero encountered in divide\n", + ":37: RuntimeWarning: divide by zero encountered in divide\n", + ":37: RuntimeWarning: invalid value encountered in divide\n" + ] + }, + { + "name": "stdout", + "output_type": "stream", + "text": [ + "278/293, CM-IAD-CL-PCN Sema5b Glut\n", + "279/293, RE-Xi Nox4 Glut\n", + "280/293, DMH Hmx2 Glut\n", + "281/293, PMd-LHA Foxb1 Glut\n", + "282/293, SCiw Pitx2 Glut\n", + "283/293, MPN-MPO-PVpo Hmx2 Glut\n", + "284/293, PAG-SC Neurod2 Meis2 Glut\n", + "285/293, NLOT Rho Glut\n" + ] + }, + { + "name": "stderr", + "output_type": "stream", + "text": [ + ":37: RuntimeWarning: divide by zero encountered in divide\n", + ":37: RuntimeWarning: invalid value encountered in divide\n", + ":37: RuntimeWarning: divide by zero encountered in divide\n", + ":37: RuntimeWarning: invalid value encountered in divide\n", + ":37: RuntimeWarning: invalid value encountered in divide\n" + ] + }, + { + "name": "stdout", + "output_type": "stream", + "text": [ + "286/293, POR Gata3 Gly-Gaba\n" + ] + }, + { + "name": "stderr", + "output_type": "stream", + "text": [ + ":37: RuntimeWarning: divide by zero encountered in divide\n" + ] + }, + { + "name": "stdout", + "output_type": "stream", + "text": [ + "287/293, AHN Onecut3 Gaba\n", + "288/293, SCs Lef1 Gli3 Gaba\n", + "289/293, IRN Dmbx1 Pax2 Gly-Gaba\n", + "290/293, OB-mi Frmd7 Gaba\n", + "291/293, PBG Mtnr1a Glut-Chol\n" + ] + }, + { + "name": "stderr", + "output_type": "stream", + "text": [ + ":37: RuntimeWarning: divide by zero encountered in divide\n", + ":37: RuntimeWarning: invalid value encountered in divide\n" + ] + }, + { + "name": "stdout", + "output_type": "stream", + "text": [ + "292/293, DMX VII Tbx20 Chol\n", + "CPU times: user 1h 23min 1s, sys: 9min 48s, total: 1h 32min 49s\n", + "Wall time: 2h 33min 11s\n" + ] + } + ], + "source": [ + "%%time\n", + "\n", + "contact_range = (0, 30)\n", + "control_range = (30, np.float64('inf'))\n", + "\n", + "# Get the gene enrichment in close contact cells\n", + "keys = close_contact_subclass_dict.keys()\n", + "for key_id, ct_query in enumerate(keys):\n", + " print(f'{key_id}/{len(keys)}, {ct_query}')\n", + " \n", + " # Load the highly imputed highly varible genes for the query cell type\n", + " adata = load_imputation_data(imputation_path, genes=hvg_dict[ct_query], \n", + " cell_types=[ct_query], verbose=False)\n", + " \n", + " for ct_ref in close_contact_subclass_dict[ct_query]:\n", + " cis = (ct_query == ct_ref)\n", + " \n", + " for region in major_brain_regions:\n", + " if tuple(sorted([ct_query, ct_ref])) not in contact_pairs_by_region[region]:\n", + " continue\n", + " \n", + " # Get the contact cells and control cells\n", + " contact_cells = get_cell_ids_within_dist_range(obs_of_region_dict[region], ct_query, ct_ref, \n", + " 'subclass_label_transfer', contact_range[0], contact_range[1], cis=cis)\n", + " \n", + " control_cells = get_cell_ids_within_dist_range(obs_of_region_dict[region], ct_query, ct_ref, \n", + " 'subclass_label_transfer', control_range[0], control_range[1], cis=cis)\n", + " \n", + " # Get the expressions\n", + " adata_contact = adata[adata.obs.index.isin(contact_cells)]\n", + " adata_control = adata[adata.obs.index.isin(control_cells)]\n", + "\n", + " X_contact = adata_contact.X.toarray()\n", + " X_control = adata_control.X.toarray()\n", + " \n", + " # Calculate the statistics\n", + " contact_means = np.mean(X_contact, axis=0)\n", + " control_means = np.mean(X_control, axis=0)\n", + " fold_changes = contact_means / control_means\n", + " pvals = scipy.stats.ttest_ind(X_contact, X_control, axis=0, \n", + " equal_var=False, alternative='greater')[1]\n", + " \n", + " for i in range(adata_contact.shape[1]):\n", + " contact_gene_enrichment_dicts[region]['subclass_query'].append(ct_query)\n", + " contact_gene_enrichment_dicts[region]['subclass_ref'].append(ct_ref)\n", + " \n", + " contact_gene_enrichment_dicts[region]['gene'].append(adata_contact.var.index[i])\n", + " contact_gene_enrichment_dicts[region]['contact_mean'].append(contact_means[i])\n", + " contact_gene_enrichment_dicts[region]['control_mean'].append(control_means[i])\n", + " contact_gene_enrichment_dicts[region]['fold_change'].append(fold_changes[i])\n", + " contact_gene_enrichment_dicts[region]['pval'].append(pvals[i])\n", + " \n" + ] + }, + { + "cell_type": "code", + "execution_count": 9, + "id": "510f566a", + "metadata": {}, + "outputs": [], + "source": [ + "output_path = 'contact_enriched_genes'\n", + "os.makedirs(output_path, exist_ok=True)\n", + "\n", + "contact_gene_enrichment_dfs = {}\n", + "\n", + "for region in contact_gene_enrichment_dicts:\n", + " contact_gene_enrichment_dfs[region] = pd.DataFrame(contact_gene_enrichment_dicts[region])\n", + " contact_gene_enrichment_dfs[region] = contact_gene_enrichment_dfs[region][\n", + " ~np.isnan(contact_gene_enrichment_dfs[region]['pval'])]\n", + " contact_gene_enrichment_dfs[region]['pval_adjusted'] = statsmodels.stats.multitest.multipletests(\n", + " contact_gene_enrichment_dfs[region]['pval'], method='fdr_bh')[1]\n", + "\n", + "\n", + " mask = contact_gene_enrichment_dfs[region]['fold_change'] > 2\n", + " mask = mask & (contact_gene_enrichment_dfs[region]['pval_adjusted'] < 0.01)\n", + " contact_gene_enrichment_dfs[region] = contact_gene_enrichment_dfs[region][mask].sort_values(\n", + " ['pval_adjusted', 'fold_change'], ascending=[True, False])\n", + " \n", + " contact_gene_enrichment_dfs[region].to_csv(os.path.join(output_path, f'{region}_contact_enriched_genes.csv'))" + ] + }, + { + "cell_type": "code", + "execution_count": 10, + "id": "07cb5751", + "metadata": {}, + "outputs": [], + "source": [ + "output_path = 'contact_enriched_genes'\n", + "major_brain_regions = ['Cerebellum', 'Cortical_subplate', 'Fiber_tracts', 'Hippocampus',\n", + " 'Isocortex', 'Medulla', 'Olfactory', 'Pallidum', 'Pons', 'Striatum',\n", + " 'Thalamus', 'Ventricular_systems', 'anterior_HY', 'anterior_MB',\n", + " 'posterior_HY', 'posterior_MB']\n", + "\n", + "contact_gene_enrichment_dfs = {}\n", + "\n", + "for region in major_brain_regions:\n", + " contact_gene_enrichment_dfs[region] = pd.read_csv(os.path.join(\n", + " output_path, f'{region}_contact_enriched_genes.csv'))" + ] + }, + { + "cell_type": "code", + "execution_count": 11, + "id": "1782b7bd", + "metadata": {}, + "outputs": [ + { + "data": { + "text/html": [ + "
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Unnamed: 0subclass_querysubclass_refgenecontact_meancontrol_meanfold_changepvalpval_adjusted
Cerebellum0329049VLMC NNCHOR NNDpep13.2529980.009311349.3650800.0000000.000000
169283Endo NNSMC NNCytl11.5048740.014590103.1409500.0000000.000000
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370372Endo NNSMC NNFbln53.1826090.04591069.3234500.0000000.000000
470823Endo NNSMC NNPi160.6111920.01493340.9297260.0000000.000000
.................................
posterior_MB6208144869ABC NNSMC NNEmp11.1918510.5642892.1121270.0009620.009902
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621188708BAM NNABC NNShc40.0604590.0231332.6135240.0009700.009967
621254113SC Tnnt1 Gli3 GabaSCig Tfap2b Chrnb3 GlutGm135890.0658390.0326802.0146750.0009700.009970
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}, + "execution_count": 15, + "metadata": {}, + "output_type": "execute_result" + } + ], + "source": [ + "contact_gene_enrichment_dfs['Isocortex'][\n", + " contact_gene_enrichment_dfs['Isocortex']['gene'] == 'Pi16']" + ] + }, + { + "cell_type": "code", + "execution_count": null, + "id": "91d4d332", + "metadata": {}, + "outputs": [], + "source": [] + } + ], + "metadata": { + "kernelspec": { + "display_name": "Python 3 (ipykernel)", + "language": "python", + "name": "python3" + }, + "language_info": { + "codemirror_mode": { + "name": "ipython", + "version": 3 + }, + "file_extension": ".py", + "mimetype": "text/x-python", + "name": "python", + "nbconvert_exporter": "python", + "pygments_lexer": "ipython3", + "version": "3.10.5" + } + }, + "nbformat": 4, + "nbformat_minor": 5 +} diff --git a/scripts/ligand_receptor_analysis/get_imputed_expressions_for_lr_genes.ipynb b/scripts/ligand_receptor_analysis/get_imputed_expressions_for_lr_genes.ipynb new file mode 100644 index 0000000..964eea0 --- /dev/null +++ b/scripts/ligand_receptor_analysis/get_imputed_expressions_for_lr_genes.ipynb @@ -0,0 +1,12723 @@ +{ + "cells": [ + { + "cell_type": "code", + "execution_count": 1, + "id": "02a7a72e", + "metadata": {}, + "outputs": [], + "source": [ + "import os\n", + "\n", + "import numpy as np\n", + "import pandas as pd\n", + "import matplotlib\n", + "import matplotlib.pyplot as plt\n", + "\n", + "import scanpy as sc\n", + "sc.settings.n_jobs = 56\n", + "sc.settings.set_figure_params(dpi=180, dpi_save=300, frameon=False, figsize=(4, 4), fontsize=8, facecolor='white')" + ] + }, + { + "cell_type": "code", + "execution_count": 2, + "id": "a38dbe03", + "metadata": {}, + "outputs": [], + "source": [ + "# Read the CellChat database\n", + "cellchat_db_df_file = '/home/xingjiepan/data/whole_brain/database/cellchat/cell_chat_mouse_interactions.csv'\n", + "cellchat_db_df = pd.read_csv(cellchat_db_df_file).set_index('Unnamed: 0')\n", + "\n", + "# Generate the dictionary of ligand receptors\n", + "lr_dict = {}\n", + "\n", + "for lr_name in cellchat_db_df.index:\n", + " lr_name2 = cellchat_db_df.loc[lr_name, 'interaction_name_2']\n", + " \n", + " # Change to upper cases to avoid the inconsitant naming conventions\n", + " ligands = lr_name2.split(' - ')[0].strip('(').strip(')').strip().upper()\n", + " receptors = lr_name2.split(' - ')[1].strip('(').strip(')').strip().upper()\n", + " \n", + " lr_dict[lr_name] = {'ligands': ligands.split('+'), 'receptors': receptors.split('+')}\n", + " \n", + "# Update the ligand and receptor names to mactch the sequencing data\n", + "name_map = {'INSSR': ['INSR'], 'CXCL4': ['PF4'], 'IL4R': ['IL4RA'], 'IL6R': ['IL6RA'],\n", + " 'GH1': ['GH'], 'IFNA': ['IFNA2'], 'CD45': ['PTPRC'], 'LXA4': ['FPR3'],\n", + " 'NGFA': ['KLK1B4'], 'JAM1': ['F11R'], 'H2-Q8': ['H2-Q6'], 'H2-T9': ['H2-T22'],\n", + " 'H2-T18': ['H2-T3'], 'H2-Q9': ['H2-Q7'], 'H2-L': ['H2-D1'], 'H2-D': ['H2-D1'],\n", + " \n", + " 'VEGFR1': ['FLT1'], 'VEGFR2': ['KDR'], 'VEGFR3': ['FLT4'], \n", + " 'VEGFR1R2': ['FLT1', 'KDR'], 'VEGFR2R3': ['KDR', 'FLT4'],\n", + " \n", + " 'INHBABB': ['INHBA', 'INHBB'], 'INHABA': ['INHA', 'INHBA'], \n", + " 'INHABB': ['INHA', 'INHBB'], 'INHB': ['INHBA'],\n", + " \n", + " 'IL17AF': ['IL17A', 'IL17F']\n", + " }\n", + "\n", + "for lr_name in lr_dict:\n", + " for gene in lr_dict[lr_name]['ligands']:\n", + " if gene in name_map.keys():\n", + " lr_dict[lr_name]['ligands'].remove(gene)\n", + " lr_dict[lr_name]['ligands'] += name_map[gene]\n", + " \n", + " for gene in lr_dict[lr_name]['receptors']:\n", + " if gene in name_map.keys():\n", + " lr_dict[lr_name]['receptors'].remove(gene)\n", + " lr_dict[lr_name]['receptors'] += name_map[gene]\n", + " \n", + "# Get the all of the ligand receptor genes\n", + "all_lr_names = []\n", + "for lr_name in lr_dict:\n", + " all_lr_names += lr_dict[lr_name]['ligands']\n", + " all_lr_names += lr_dict[lr_name]['receptors']\n", + " \n", + "all_lr_names = np.unique(all_lr_names)" + ] + }, + { + "cell_type": "markdown", + "id": "46ef4415", + "metadata": {}, + "source": [ + "# Get the imputation results" + ] + }, + { + "cell_type": "code", + "execution_count": 3, + "id": "2b4d3a18", + "metadata": {}, + "outputs": [], + "source": [ + "import os\n", + "import anndata\n", + "\n", + "def load_imputation_data(imputation_path, genes=None, cell_types=None, verbose=False):\n", + " '''Load the imputation results into an AnnData object with specified\n", + " genes and cell types.'''\n", + " # Load the table of gene partitions\n", + " gene_partition_df = pd.read_csv(os.path.join(imputation_path, 'gene_partition.csv')).set_index('gene')\n", + " \n", + " # Change the gene names to upper cases\n", + " # NOTE: This is only for the ligand-receptor analysis\n", + " gene_partition_df.index = gene_partition_df.index.str.upper()\n", + "\n", + " # Define which genes to load\n", + " if genes is None:\n", + " genes = np.array(gene_partition_df.index)\n", + " \n", + " # Define which partitions to load\n", + " partitions = np.unique(gene_partition_df['gene_partition'][gene_partition_df.index.isin(genes)])\n", + " \n", + " # Define which cell types to load\n", + " ct_paths = sorted([f for f in os.listdir(imputation_path)\n", + " if os.path.isdir(os.path.join(imputation_path, f))])\n", + " if not (cell_types is None):\n", + " ct_paths = np.intersect1d(ct_paths, [ct.replace('/', '-').replace(' ', '_') for ct in cell_types])\n", + " \n", + " # Load the specified cell types\n", + " adata_list = []\n", + " for ctp in ct_paths:\n", + " adata_ct_list = []\n", + " \n", + " # Load the specified genes\n", + " for p in partitions:\n", + " if verbose:\n", + " print(f\"Load {os.path.join(imputation_path, ctp, f'{p}.h5ad')}\")\n", + " \n", + " adata_ct_p = anndata.read_h5ad(os.path.join(imputation_path, ctp, f'{p}.h5ad'))\n", + " \n", + " # Change the gene names to upper cases\n", + " # NOTE: This is only for the ligand-receptor analysis\n", + " adata_ct_p.var.index = adata_ct_p.var.index.str.upper()\n", + " \n", + " adata_ct_p = adata_ct_p[:, adata_ct_p.var.index.isin(genes)].copy()\n", + " adata_ct_list.append(adata_ct_p)\n", + " \n", + " adata_list.append(anndata.concat(adata_ct_list, axis=1, merge='first'))\n", + " \n", + " return anndata.concat(adata_list, axis=0)" + ] + }, + { + "cell_type": "code", + "execution_count": 4, + "id": "896830e1", + "metadata": { + "scrolled": true + }, + "outputs": [ + { + "name": "stdout", + "output_type": "stream", + "text": [ + "Load /home/xingjiepan/data/whole_brain/analysis/20230723_final_integration/integration_workspace/gene_expression_imputation/ABC_NN/0.h5ad\n", + "Load /home/xingjiepan/data/whole_brain/analysis/20230723_final_integration/integration_workspace/gene_expression_imputation/ABC_NN/1.h5ad\n", + "Load /home/xingjiepan/data/whole_brain/analysis/20230723_final_integration/integration_workspace/gene_expression_imputation/ABC_NN/2.h5ad\n", + "Load 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"Load /home/xingjiepan/data/whole_brain/analysis/20230723_final_integration/integration_workspace/gene_expression_imputation/MPN-MPO-LPO_Lhx6_Zfhx3_Gaba/21.h5ad\n", + "Load /home/xingjiepan/data/whole_brain/analysis/20230723_final_integration/integration_workspace/gene_expression_imputation/MPN-MPO-LPO_Lhx6_Zfhx3_Gaba/22.h5ad\n", + "Load /home/xingjiepan/data/whole_brain/analysis/20230723_final_integration/integration_workspace/gene_expression_imputation/MPN-MPO-LPO_Lhx6_Zfhx3_Gaba/23.h5ad\n", + "Load /home/xingjiepan/data/whole_brain/analysis/20230723_final_integration/integration_workspace/gene_expression_imputation/MPN-MPO-LPO_Lhx6_Zfhx3_Gaba/24.h5ad\n", + "Load /home/xingjiepan/data/whole_brain/analysis/20230723_final_integration/integration_workspace/gene_expression_imputation/MPN-MPO-LPO_Lhx6_Zfhx3_Gaba/25.h5ad\n", + "Load /home/xingjiepan/data/whole_brain/analysis/20230723_final_integration/integration_workspace/gene_expression_imputation/MPN-MPO-LPO_Lhx6_Zfhx3_Gaba/26.h5ad\n", 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"Load /home/xingjiepan/data/whole_brain/analysis/20230723_final_integration/integration_workspace/gene_expression_imputation/MRN-VTN-PPN_Pax5_Cdh23_Gaba/20.h5ad\n", + "Load /home/xingjiepan/data/whole_brain/analysis/20230723_final_integration/integration_workspace/gene_expression_imputation/MRN-VTN-PPN_Pax5_Cdh23_Gaba/21.h5ad\n", + "Load /home/xingjiepan/data/whole_brain/analysis/20230723_final_integration/integration_workspace/gene_expression_imputation/MRN-VTN-PPN_Pax5_Cdh23_Gaba/22.h5ad\n", + "Load /home/xingjiepan/data/whole_brain/analysis/20230723_final_integration/integration_workspace/gene_expression_imputation/MRN-VTN-PPN_Pax5_Cdh23_Gaba/23.h5ad\n", + "Load /home/xingjiepan/data/whole_brain/analysis/20230723_final_integration/integration_workspace/gene_expression_imputation/MRN-VTN-PPN_Pax5_Cdh23_Gaba/24.h5ad\n", + "Load /home/xingjiepan/data/whole_brain/analysis/20230723_final_integration/integration_workspace/gene_expression_imputation/MRN-VTN-PPN_Pax5_Cdh23_Gaba/25.h5ad\n", + "Load /home/xingjiepan/data/whole_brain/analysis/20230723_final_integration/integration_workspace/gene_expression_imputation/MRN-VTN-PPN_Pax5_Cdh23_Gaba/26.h5ad\n", + "Load /home/xingjiepan/data/whole_brain/analysis/20230723_final_integration/integration_workspace/gene_expression_imputation/MRN-VTN-PPN_Pax5_Cdh23_Gaba/27.h5ad\n", + "Load /home/xingjiepan/data/whole_brain/analysis/20230723_final_integration/integration_workspace/gene_expression_imputation/MRN-VTN-PPN_Pax5_Cdh23_Gaba/28.h5ad\n", + "Load /home/xingjiepan/data/whole_brain/analysis/20230723_final_integration/integration_workspace/gene_expression_imputation/MRN-VTN-PPN_Pax5_Cdh23_Gaba/29.h5ad\n", + "Load /home/xingjiepan/data/whole_brain/analysis/20230723_final_integration/integration_workspace/gene_expression_imputation/MRN-VTN-PPN_Pax5_Cdh23_Gaba/30.h5ad\n", + "Load 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load_imputation_data(imputation_path, genes=all_lr_names, verbose=True)\n", + "adata.X = adata.X.toarray()" + ] + }, + { + "cell_type": "code", + "execution_count": 5, + "id": "f8b2fb53", + "metadata": {}, + "outputs": [ + { + "data": { + "text/plain": [ + "AnnData object with n_obs × n_vars = 9343481 × 961\n", + " obs: 'integration_partition_transfer', 'integration_partition_confidence', 'subclass_label_transfer', 'subclass_label_confidence', 'cl_transfer', 'cl_confidence'" + ] + }, + "execution_count": 5, + "metadata": {}, + "output_type": "execute_result" + } + ], + "source": [ + "adata" + ] + }, + { + "cell_type": "code", + "execution_count": 6, + "id": "0ce2e478", + "metadata": {}, + "outputs": [], + "source": [ + "# Save the adata\n", + "adata.write('adate_imputed_lr_expression.h5ad')" + ] + }, + { + "cell_type": "markdown", + "id": "23fa5f2c", + "metadata": {}, + "source": [ + "# Generate adatas for ligands and receptors" + ] + }, + { + "cell_type": "code", + "execution_count": 7, + "id": "8c3d0e4f", + "metadata": { + "scrolled": true + }, + "outputs": [ + { + "name": "stdout", + "output_type": "stream", + "text": [ + "Miss ligands ['CXCL11'] for CXCL11_CXCR3\n", + "Miss ligands ['CXCL11'] for CXCL11_ACKR1\n", + "Miss ligands ['CXCL11'] for CXCL11_ACKR3\n", + "Miss receptors ['NCR3-PS'] for BAG6_NCR3-PS\n", + "Miss ligands ['NPNT1'] for NPNT1_ITGA8_ITGB1\n", + "Miss ligands ['NPNT2'] for NPNT2_ITGA8_ITGB1\n", + "Miss receptors ['GP COMPLEX'] for VWF_GP1BA_GP1BB_GP5_GP9\n", + "Miss ligands ['CD1D2'] for CD1D2_PIRA2\n", + "Miss ligands ['CD99'] for CD99_PILRA\n", + "Miss ligands ['CD99'] for CD99_CD99\n", + "Miss ligands ['H2-T10'] for H2-T10_CD8A\n", + "Miss ligands ['H2-BL'] for H2-BL_CD8A\n", + "Miss ligands ['GM10499'] for GM10499_CD8A\n", + "Miss ligands ['H2-T-PS'] for H2-T-PS_CD8A\n", + "Miss ligands ['H2-T10'] for H2-T10_CD8B1\n", + "Miss ligands ['H2-BL'] for H2-BL_CD8B1\n", + "Miss ligands ['GM10499'] for GM10499_CD8B1\n", + "Miss ligands ['H2-T-PS'] for H2-T-PS_CD8B1\n", + "Miss ligands ['H2-BL'] for H2-BL_KIR3DL1\n", + "Miss receptors ['KLRA'] for H2-D_KLRA\n", + "Miss receptors ['KLRA'] for H2-K1_KLRA\n", + "Miss ligands ['RAET1A'] for RAET1A_KLRK1\n", + "Miss ligands ['H60A'] for H60A_KLRK1\n", + "Miss ligands ['H2-EA'] for H2-EA_CD4\n" + ] + } + ], + "source": [ + "# Only keep ligand receptor pairs whose all components are measured\n", + "measured_genes = set(adata.var.index)\n", + "lr_dict_measured = {}\n", + "\n", + "for lr_name in lr_dict:\n", + " if len(measured_genes.intersection(lr_dict[lr_name]['ligands'])) != len(lr_dict[lr_name]['ligands']):\n", + " print(f'Miss ligands {lr_dict[lr_name][\"ligands\"]} for {lr_name}')\n", + " continue\n", + " if len(measured_genes.intersection(lr_dict[lr_name]['receptors'])) != len(lr_dict[lr_name]['receptors']):\n", + " print(f'Miss receptors {lr_dict[lr_name][\"receptors\"]} for {lr_name}')\n", + " continue\n", + " \n", + " lr_dict_measured[lr_name] = lr_dict[lr_name]" + ] + }, + { + "cell_type": "code", + "execution_count": 8, + "id": "e9cfaa9f", + "metadata": {}, + "outputs": [], + "source": [ + "# Generate adatas for the ligand and receptor expression levels\n", + "X_ligand = np.zeros((adata.shape[0], len(lr_dict_measured)), dtype=np.float32)\n", + "X_receptor = np.zeros((adata.shape[0], len(lr_dict_measured)), dtype=np.float32)\n", + "\n", + "lr_keys = list(lr_dict_measured)\n", + "for i, lr_pair in enumerate(lr_keys):\n", + " X_ligand[:, i] = np.prod(adata.X[:, adata.var.index.isin(lr_dict_measured[lr_pair]['ligands'])], axis=1)\n", + " X_receptor[:, i] = np.prod(adata.X[:, adata.var.index.isin(lr_dict_measured[lr_pair]['receptors'])], axis=1)\n", + " \n", + "adata_ligand = anndata.AnnData(X=X_ligand, obs=adata.obs.copy(), \n", + " var=pd.DataFrame({'lr_pair': lr_keys}).set_index('lr_pair'))\n", + "adata_receptor = anndata.AnnData(X=X_receptor, obs=adata.obs.copy(), \n", + " var=pd.DataFrame({'lr_pair': lr_keys}).set_index('lr_pair'))" + ] + }, + { + "cell_type": "code", + "execution_count": 9, + "id": "a4f5d534", + "metadata": {}, + "outputs": [], + "source": [ + "# Save the data\n", + "adata_ligand.write('adate_imputed_lr_pair_ligand_expression.h5ad')\n", + "adata_receptor.write('adate_imputed_lr_pair_receptor_expression.h5ad')" + ] + }, + { + "cell_type": "markdown", + "id": "d3ca1df2", + "metadata": {}, + "source": [ + "# Get the cells that pass the quality filters" + ] + }, + { + "cell_type": "code", + "execution_count": 10, + "id": "06c71d31", + "metadata": {}, + "outputs": [ + { + "name": "stdout", + "output_type": "stream", + "text": [ + "CPU times: user 2min 13s, sys: 11.2 s, total: 2min 25s\n", + "Wall time: 5min 6s\n" + ] + } + ], + "source": [ + "%%time\n", + "# Load the cell type labels\n", + "adata_filtered = sc.read_h5ad('/home/xingjiepan/data/whole_brain/analysis/20230723_final_integration/integration_workspace/adata_merfish_label_transfer.h5ad')\n", + "df_ct_labels = adata_filtered.obs.copy()\n", + "df_ct_labels = df_ct_labels[df_ct_labels['adjusted_subclass_label_confidence'] > 0.8]\n", + "df_ct_labels = df_ct_labels[df_ct_labels['subclass_label_transfer'] != 'LQ'].copy()\n", + "df_ct_labels.to_csv('cells_passed_quality_filter.csv')" + ] + }, + { + "cell_type": "code", + "execution_count": null, + "id": "d63fbbd1", + "metadata": {}, + "outputs": [], + "source": [] + } + ], + "metadata": { + "kernelspec": { + "display_name": "Python 3 (ipykernel)", + "language": "python", + "name": "python3" + }, + "language_info": { + "codemirror_mode": { + "name": "ipython", + "version": 3 + }, + "file_extension": ".py", + "mimetype": "text/x-python", + "name": "python", + "nbconvert_exporter": "python", + "pygments_lexer": "ipython3", + "version": "3.10.5" + } + }, + "nbformat": 4, + "nbformat_minor": 5 +}