From 16f939d0f3ea5e88b440d0b3966481c515944669 Mon Sep 17 00:00:00 2001 From: cerivs Date: Tue, 21 Nov 2023 15:21:49 -0800 Subject: [PATCH] Update zfa-edit.obo Added early palate and related changes Added and updated defs --- src/ontology/zfa-edit.obo | 27 ++++++++++++++++++++++----- 1 file changed, 22 insertions(+), 5 deletions(-) diff --git a/src/ontology/zfa-edit.obo b/src/ontology/zfa-edit.obo index d1fb216..cd43e69 100644 --- a/src/ontology/zfa-edit.obo +++ b/src/ontology/zfa-edit.obo @@ -1,5 +1,5 @@ format-version: 1.2 -date: 29:11:2022 16:29 +date: 21:11:2023 14:46 saved-by: zfinf auto-generated-by: OBO-Edit 2.3-beta5 subsetdef: cell_slim "cell_slim" @@ -7203,6 +7203,7 @@ relationship: start ZFS:0000000 ! unknown id: ZFA:0000608 name: ventral transverse namespace: zebrafish_anatomy +def: "Ventral branchial muscle that runs diagonally from near the horizontal midline at the caudal end caudal to the ventral side at the rostral end. The ventral transverse muscles are paired and there is a pair in each branchial arch." [GOC:cvs, ORCID:0000-0002-2244-7917, ZFIN:ZDB-PUB-970819-13] synonym: "transverse ventralis" EXACT [] synonym: "transversus ventralis" EXACT [] xref: TAO:0000608 @@ -16464,6 +16465,7 @@ is_a: ZFA:0001461 ! chondrocranium cartilage relationship: end ZFS:0000042 ! juvenile:days 30-44 relationship: part_of ZFA:0000351 ! olfactory region relationship: part_of ZFA:0001580 ! neurocranium +relationship: part_of ZFA:0005958 ! early palate relationship: start ZFS:0000033 ! hatching:long-pec [Term] @@ -17664,9 +17666,10 @@ def: "Paired thin medially aligned bar of cartilage that extends from the anteri synonym: "trabeculae cranii" EXACT OMO:0003004 [] xref: TAO:0001507 is_a: ZFA:0001461 ! chondrocranium cartilage -relationship: end ZFS:0000044 ! adult +relationship: end ZFS:0000000 ! unknown relationship: part_of ZFA:0001321 ! neurocranial trabecula relationship: part_of ZFA:0001580 ! neurocranium +relationship: part_of ZFA:0005958 ! early palate relationship: start ZFS:0000032 ! pharyngula:high-pec [Term] @@ -17677,9 +17680,10 @@ def: "Cartilage formed via medial fusion between bilaterally paired trabecula cr synonym: "trabecular bar" EXACT [] xref: TAO:0001508 is_a: ZFA:0001461 ! chondrocranium cartilage -relationship: end ZFS:0000044 ! adult +relationship: end ZFS:0000000 ! unknown relationship: part_of ZFA:0001321 ! neurocranial trabecula relationship: part_of ZFA:0001580 ! neurocranium +relationship: part_of ZFA:0005958 ! early palate relationship: start ZFS:0000000 ! unknown [Term] @@ -18501,6 +18505,7 @@ name: neurocranium namespace: zebrafish_anatomy def: "Anatomical cluster that is the regional skeletal system surrounding the brain." [GOC:mh, ORCiD:0000-0001-9114-8737] synonym: "braincase" EXACT [] +synonym: "palatal skeleton" RELATED [ZFIN:ZDB-PUB-201027-4] xref: TAO:0001580 is_a: ZFA:0001478 ! anatomical cluster relationship: end ZFS:0000044 ! adult @@ -21663,7 +21668,7 @@ relationship: start ZFS:0000030 ! pharyngula:prim-15 id: ZFA:0005112 name: dorsal lateral line namespace: zebrafish_anatomy -def: "One of eight distinct lateral lines in the 4-day larva. The dorsal line runs along the dorsal side of the body and never extends beyond the dorsal fin. A sensory system on the surface of the fish, consisting of small sensory patches (neuromasts) distributed in discrete lines over the body surface. The lateral line system is stimulated by local water displacements and vibrations, and detects propulsion of the fish through the water, as well as facilitating shoaling, prey capture, and predator and obstacle avoidance. (See Anatomical Atlas entry for lateral line by T. Whitfield.)" [GOC:ymb, ORCiD:0000-0002-9900-7880, ZFIN:ZDB-PUB-070907-34] +def: "One of eight distinct lateral lines in the 4-day larva. The dorsal lateral line runs along the dorsal side of the body and never extends beyond the dorsal fin. The lateral line system is stimulated by local water displacements and vibrations, and detects propulsion of the fish through the water, as well as facilitating shoaling, prey capture, and predator and obstacle avoidance. (See Anatomical Atlas entry for lateral line by T. Whitfield.)" [GOC:ymb, ORCiD:0000-0002-9900-7880, ZFIN:ZDB-PUB-070907-34] synonym: "dorsal lateral lines" EXACT OMO:0003004 [] xref: TAO:0005112 is_a: ZFA:0001469 ! lateral line @@ -32557,6 +32562,18 @@ relationship: start ZFS:0000000 ! unknown created_by: ceriv creation_date: 2021-08-13T13:47:16Z +[Term] +id: ZFA:0005958 +name: early palate +namespace: zebrafish_anatomy +def: "The cartilage which make up the anterior neurocranium that forms the roof of the oral cavity during pharyngeal and early larval stages. This cluster is used to model the mammalian palate." [GOC:CVS, ORCID:0000-0002-2244-7917, ZFIN:ZDB-PUB-151122-6] +is_a: ZFA:0001478 ! anatomical cluster +relationship: end ZFS:0000042 ! juvenile:days 30-44 +relationship: part_of ZFA:0001580 ! neurocranium +relationship: start ZFS:0000031 ! pharyngula:prim-25 +created_by: ceriv +creation_date: 2023-06-09T09:20:28Z + [Term] id: ZFA:0006000 name: intermediate hypothalamus @@ -40040,8 +40057,8 @@ is_symmetric: true id: develops_from name: develops from xref: RO:0002202 -holds_over_chain: part_of develops_from is_transitive: true +holds_over_chain: part_of develops_from transitive_over: part_of ! part of [Typedef]