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NAMESPACE
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NAMESPACE
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# Generated by roxygen2: do not edit by hand
export(AllSpatialDimPlot)
export(AllSpatialFeaturePlot)
export(BayesSpaceChainMatrixSimilarity)
export(DistToNeighborObj)
export(DoBayesSpace)
export(DoBayesSpaceIntegration)
export(DoSpark)
export(DoSpectrum)
export(DoTICA)
export(DostLearn)
export(ExtractFeatures)
export(ExtractFeaturesVisium)
export(ExtractGeneExpByNeighbor)
export(FindClustersForUniroot)
export(FindCoordinateNeighbor)
export(FindNClusters)
export(FindNeighborsByDistance)
export(FindSNNClusters)
export(GetMIA)
export(IntegrationByDistance)
export(LoadImageFeature)
export(LoadImageFeatureVisium)
export(MultiModalIntegration)
export(NeighborDist)
export(PreProcessing)
export(RunDimReduc)
export(SpatialAwareProcess)
export(SpatialPCAWorkflow)
export(gg_color_hue)
export(st_voronoi_point)
importFrom(BayesSpace,spatialCluster)
importFrom(BayesSpace,spatialPreprocess)
importFrom(IntNMF,nmf.mnnals)
importFrom(Rfast2,dcora)
importFrom(S4Vectors,metadata)
importFrom(SPARK,CreateSPARKObject)
importFrom(SPARK,spark.test)
importFrom(SPARK,spark.vc)
importFrom(SPARK,sparkx)
importFrom(Seurat,"DefaultAssay<-")
importFrom(Seurat,"VariableFeatures<-")
importFrom(Seurat,Cells)
importFrom(Seurat,CreateAssayObject)
importFrom(Seurat,CreateDimReducObject)
importFrom(Seurat,CreateSeuratObject)
importFrom(Seurat,DefaultAssay)
importFrom(Seurat,FindClusters)
importFrom(Seurat,FindMultiModalNeighbors)
importFrom(Seurat,FindNeighbors)
importFrom(Seurat,FindVariableFeatures)
importFrom(Seurat,GetAssayData)
importFrom(Seurat,GetTissueCoordinates)
importFrom(Seurat,Load10X_Spatial)
importFrom(Seurat,NormalizeData)
importFrom(Seurat,RunPCA)
importFrom(Seurat,RunUMAP)
importFrom(Seurat,SCTransform)
importFrom(Seurat,ScaleData)
importFrom(Seurat,SetAssayData)
importFrom(Seurat,VariableFeatures)
importFrom(SingleCellExperiment,"reducedDims<-")
importFrom(SingleCellExperiment,SingleCellExperiment)
importFrom(SingleCellExperiment,colData)
importFrom(SingleCellExperiment,reducedDims)
importFrom(SpatialPCA,CreateSpatialPCAObject)
importFrom(SpatialPCA,SpatialPCA_EstimateLoading)
importFrom(SpatialPCA,SpatialPCA_SpatialPCs)
importFrom(SpatialPCA,SpatialPCA_buildKernel)
importFrom(Spectrum,CNN_kernel)
importFrom(Spectrum,cluster_similarity)
importFrom(Spectrum,integrate_similarity_matrices)
importFrom(dplyr,"%>%")
importFrom(ggplot2,aes_string)
importFrom(ggplot2,element_text)
importFrom(ggplot2,geom_point)
importFrom(ggplot2,geom_sf)
importFrom(ggplot2,ggplot)
importFrom(ggplot2,ggtitle)
importFrom(ggplot2,guide_legend)
importFrom(ggplot2,guides)
importFrom(ggplot2,scale_alpha)
importFrom(ggplot2,scale_color_gradient2)
importFrom(ggplot2,scale_color_manual)
importFrom(ggplot2,theme)
importFrom(ggplot2,theme_void)
importFrom(grDevices,as.raster)
importFrom(grDevices,dev.off)
importFrom(grDevices,hcl)
importFrom(grDevices,png)
importFrom(grid,rasterGrob)
importFrom(jsonlite,fromJSON)
importFrom(keras,application_vgg16)
importFrom(keras,image_load)
importFrom(keras,image_to_array)
importFrom(keras,imagenet_preprocess_input)
importFrom(lsa,cosine)
importFrom(omicade4,mcia)
importFrom(plotrix,draw.circle)
importFrom(png,readPNG)
importFrom(rhdf5,h5read)
importFrom(sf,st_as_sf)
importFrom(sf,st_cast)
importFrom(sf,st_collection_extract)
importFrom(sf,st_combine)
importFrom(sf,st_convex_hull)
importFrom(sf,st_geometry)
importFrom(sf,st_geometry_type)
importFrom(sf,st_intersection)
importFrom(sf,st_intersects)
importFrom(sf,st_union)
importFrom(sf,st_voronoi)
importFrom(ssanv,uniroot.integer)
importFrom(tensorBSS,tFOBI)
importFrom(tensorBSS,tJADE)
importFrom(tensorBSS,tPCA)
importFrom(tensorBSS,tensorCentering)
importFrom(tensorBSS,tensorTransform)