All notable changes to this project will be documented in this file.
The format is based on Keep a Changelog, and this project adheres to Semantic Versioning.
- The MrVI implementation has been moved to
scvi-tools(from scvi.external import MRVI), and this package will no longer be maintained.
- Adds deprecation warning in the form of a FutureWarning on import.
- Various fixes and UX improvements to the model kwargs, DE, and DA functions.
- This release is a major rework of the mrvi model and is generally incompatible with the previous v0.x.x releases.
- New attention-based encoder/decoder components.
- Model-based multivariate differential expression procedure at single-cell resolution.
- Model-based differential abundance procedure at single-cell resolution.
- Mismatched latent dimension sizes.
- Optional mixture of gaussians prior. Can also make use of cell-type labels.
- JAX implementation.