From bffa6c00ec35b28145fe4a82825298728c071688 Mon Sep 17 00:00:00 2001
From: Matt Jones <mattjones315@gmail.com>
Date: Sat, 13 Apr 2024 17:31:30 -0700
Subject: [PATCH] added ecDNA simulator to user guide

---
 docs/conf.py        | 1 +
 docs/user_guide.rst | 9 ++++++++-
 2 files changed, 9 insertions(+), 1 deletion(-)

diff --git a/docs/conf.py b/docs/conf.py
index 498daf5a..1e320207 100755
--- a/docs/conf.py
+++ b/docs/conf.py
@@ -165,6 +165,7 @@
     "notebooks/benchmark": "_static/tutorials/benchmark.png",
     "notebooks/reconstruct": "_static/tutorials/reconstruct.png",
     "notebooks/local_plotting": "_static/tutorials/local_plotting.png",
+    "notebooks/simulate_ecDNA": "_static/tutorials/local_plotting.png"
 }
 
 
diff --git a/docs/user_guide.rst b/docs/user_guide.rst
index 7dbcd667..e3d2918a 100644
--- a/docs/user_guide.rst
+++ b/docs/user_guide.rst
@@ -5,7 +5,7 @@ Cassiopeia is a flexible tool for analyzing lineage-tracing data and benchmarkin
 
 For any questions about Cassiopeia, please file an issue on `Github <https://github.com/YosefLab/Cassiopeia/issues>`_. If you'd like to contribute a tutorial or a new algorithm, please follow our :doc:`Contributing guide<contributing>`.
 
-Tutorials
+Main Tutorials
 -----------
 
 .. nbgallery::
@@ -14,6 +14,13 @@ Tutorials
    notebooks/benchmark
    notebooks/reconstruct
    notebooks/local_plotting
+   
+
+Other Tutorials
+-----------------
+
+.. toctree::
+
    notebooks/simulate_ecDNA
    
 Contributed tutorials