Singularity container support for run script #18
Workflow file for this run
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| name: SingularityQuicktest | |
| on: | |
| pull_request: | |
| branches: [ dev ] | |
| push: | |
| branches: [ dev ] | |
| jobs: | |
| build_and_test: | |
| name: Build and test Singularity container | |
| runs-on: ubuntu-22.04 | |
| steps: | |
| - name: Maximize build space | |
| uses: easimon/maximize-build-space@master | |
| with: | |
| root-reserve-mb: '28000' | |
| swap-size-mb: '128' | |
| remove-docker-images: 'true' | |
| remove-android: 'true' | |
| remove-haskell: 'true' | |
| remove-codeql: 'true' | |
| remove-dotnet: 'true' | |
| - name: Checkout | |
| uses: actions/checkout@v3 | |
| with: | |
| path: finn | |
| - name: Set up Docker | |
| uses: docker/setup-buildx-action@v2 | |
| with: | |
| driver: docker | |
| - name: Set up Singularity | |
| run: | | |
| sudo add-apt-repository -y ppa:apptainer/ppa | |
| sudo apt update | |
| sudo apt install -y apptainer | |
| alias singularity="apptainer" | |
| - name: Build Docker image | |
| uses: docker/build-push-action@v4 | |
| with: | |
| file: docker/Dockerfile.finn | |
| context: finn | |
| load: true | |
| no-cache: true | |
| tags: finn_docker_export:latest | |
| - name: Check free space | |
| run: df -h | |
| - name: Clean Docker build cache | |
| run: echo 'y' | docker builder prune | |
| - name: Check free space | |
| run: df -h | |
| - name: Check environment | |
| run: | | |
| echo $PWD | |
| echo $HOME | |
| echo $APPTAINER_TMPDIR | |
| echo $TMPDIR | |
| - name: Build Singularity image | |
| run: | | |
| mkdir $PWD/singularity_tmp | |
| export APPTAINER_TMPDIR=$PWD/singularity_tmp | |
| singularity build finn/finn_singularity_image.sif docker-daemon://finn_docker_export:latest | |
| continue-on-error: true | |
| - name: Check free space | |
| run: df -h | |
| - name: Run quicktest | |
| run: | | |
| cd finn | |
| export APPTAINER_TMPDIR=$PWD/singularity_tmp | |
| export FINN_SINGULARITY=finn_singularity_image.sif | |
| ./run-docker.sh quicktest | |
| - name: Check free space | |
| run: df -h |