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set_database_locations results in TypeError: DatabaseHandler.set_database_paths() got an unexpected keyword argument 'camper_tar_gz_loc' #355

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jehalter0 opened this issue Jul 25, 2024 · 1 comment

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@jehalter0
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When I try to set the pfam_hmm_loc using the following command:

$ DRAM-setup.py set_database_locations --pfam_hmm_loc /projects/datasets/dram/1.5.0/Pfam-A.hmm.dat.gz

I get the following TypeError, complaining about an unexpected keyword argument "camper_tar_gz_loc":

2024-07-25 09:19:32,281 - Logging to console
Traceback (most recent call last):
File "/apps/pkg/anaconda3/envs/dram-1.5.0/bin/DRAM-setup.py", line 186, in
args.func(**args_dict)
File "/apps/pkg/anaconda3/envs/dram-1.5.0/lib/python3.10/site-packages/mag_annotator/database_handler.py", line 582, in set_database_paths
db_handler.set_database_paths(**kargs, write_config=True)
TypeError: DatabaseHandler.set_database_paths() got an unexpected keyword argument 'camper_tar_gz_loc'

@Xuyang-Feng
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hi,I met the same problem when I try to set the genome_summary_form locations. Do you find the solutions to solve this problem? Thank you!

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