Docker #276
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| # https://samanpavel.medium.com/github-actions-conditional-job-execution-e6aa363d2867 | |
| # https://docs.github.com/en/actions/using-workflows/workflow-syntax-for-github-actions | |
| name: Docker | |
| on: | |
| schedule: | |
| - cron: '15 1 * * *' | |
| push: | |
| branches: [ "main" ] | |
| # Publish semver tags as releases. | |
| tags: [ 'v*.*.*' ] | |
| pull_request: | |
| branches: [ "main" ] | |
| env: | |
| REGISTRY: docker.io | |
| DOCKERHUB_USERNAME: ${{ secrets.DOCKERHUB_USERNAME }} | |
| jobs: | |
| btc_parent: | |
| env: | |
| image_name: scAgnostic | |
| runs-on: ubuntu-latest | |
| permissions: | |
| contents: read | |
| packages: write | |
| # This is used to complete the identity challenge | |
| # with sigstore/fulcio when running outside of PRs. | |
| id-token: write | |
| steps: | |
| - name: Checkout repository | |
| uses: actions/checkout@v3 | |
| # Workaround: https://github.com/docker/build-push-action/issues/461 | |
| - name: Setup Docker buildx | |
| uses: docker/setup-buildx-action@v2 | |
| # Login against a Docker registry except on PR | |
| # https://github.com/docker/login-action | |
| - name: Log in to Docker Hub | |
| if: github.event_name != 'pull_request' | |
| uses: docker/login-action@v2 | |
| with: | |
| username: ${{ secrets.DOCKERHUB_USERNAME }} | |
| password: ${{ secrets.DOCKERHUB_PASSWORD }} | |
| # Extract metadata (tags, labels) for Docker | |
| # https://github.com/docker/metadata-action | |
| - name: Extract Docker metadata | |
| id: meta | |
| uses: docker/metadata-action@v4 | |
| with: | |
| images: ${{ env.REGISTRY }}/${{ env.DOCKERHUB_USERNAME }}/${{ env.image_name }} | |
| # Build and push Docker image with Buildx (don't push on PR) | |
| # https://github.com/docker/build-push-action | |
| - name: Build and push Docker image | |
| id: build-and-push | |
| uses: docker/build-push-action@v4 | |
| with: | |
| context: . | |
| file: "./rna/${{ env.image_name }}.Dockerfile" | |
| push: ${{ github.event_name != 'pull_request' }} | |
| tags: ${{ steps.meta.outputs.tags }} | |
| labels: ${{ steps.meta.outputs.labels }} | |
| platforms: linux/amd64,linux/arm64 | |
| cache-from: type=gha,scope=${{ env.image_name }} | |
| cache-to: type=gha,mode=max,scope=${{ env.image_name }} | |
| btc_child: | |
| strategy: | |
| matrix: | |
| image_name: | |
| - scAligners | |
| - scVariant | |
| - scRBase | |
| - scBatch | |
| - scTCR | |
| needs: btc_parent | |
| runs-on: ubuntu-latest | |
| permissions: | |
| contents: read | |
| packages: write | |
| id-token: write | |
| steps: | |
| - name: Checkout repository | |
| uses: actions/checkout@v3 | |
| - name: Setup Docker buildx | |
| uses: docker/setup-buildx-action@v2 | |
| - name: Log in to Docker Hub | |
| if: github.event_name != 'pull_request' | |
| uses: docker/login-action@v2 | |
| with: | |
| username: ${{ secrets.DOCKERHUB_USERNAME }} | |
| password: ${{ secrets.DOCKERHUB_PASSWORD }} | |
| - name: Extract Docker metadata | |
| id: meta | |
| uses: docker/metadata-action@v4 | |
| with: | |
| images: ${{ env.REGISTRY }}/${{ env.DOCKERHUB_USERNAME }}/${{ matrix.image_name }} | |
| - name: Build and push Docker image | |
| id: build-and-push | |
| uses: docker/build-push-action@v4 | |
| with: | |
| context: . | |
| file: "./rna/${{ matrix.image_name }}.Dockerfile" | |
| push: ${{ github.event_name != 'pull_request' }} | |
| tags: ${{ steps.meta.outputs.tags }} | |
| labels: ${{ steps.meta.outputs.labels }} | |
| platforms: linux/amd64,linux/arm64 | |
| cache-from: type=gha,scope=${{ matrix.image_name }} | |
| cache-to: type=gha,mode=max,scope=${{ matrix.image_name }} | |
| btc_third: | |
| strategy: | |
| matrix: | |
| image_name: | |
| - scRPackages | |
| needs: btc_child | |
| runs-on: ubuntu-latest | |
| permissions: | |
| contents: read | |
| packages: write | |
| id-token: write | |
| steps: | |
| - name: Checkout repository | |
| uses: actions/checkout@v3 | |
| - name: Setup Docker buildx | |
| uses: docker/setup-buildx-action@v2 | |
| - name: Log in to Docker Hub | |
| if: github.event_name != 'pull_request' | |
| uses: docker/login-action@v2 | |
| with: | |
| username: ${{ secrets.DOCKERHUB_USERNAME }} | |
| password: ${{ secrets.DOCKERHUB_PASSWORD }} | |
| - name: Extract Docker metadata | |
| id: meta | |
| uses: docker/metadata-action@v4 | |
| with: | |
| images: ${{ env.REGISTRY }}/${{ env.DOCKERHUB_USERNAME }}/${{ matrix.image_name }} | |
| - name: Build and push Docker image | |
| id: build-and-push | |
| uses: docker/build-push-action@v4 | |
| with: | |
| context: . | |
| file: "./rna/${{ matrix.image_name }}.Dockerfile" | |
| push: ${{ github.event_name != 'pull_request' }} | |
| tags: ${{ steps.meta.outputs.tags }} | |
| labels: ${{ steps.meta.outputs.labels }} | |
| platforms: linux/amd64,linux/arm64 | |
| cache-from: type=gha,scope=${{ matrix.image_name }} | |
| cache-to: type=gha,mode=max,scope=${{ matrix.image_name }} |