Merge pull request #42 from VemundFredriksen/python-3.8 #124

	name: Build

	on:
	push:
	branches:
	- '*'
	pull_request:
	branches:
	- '*'
	workflow_dispatch:

	jobs:
	build:
	runs-on: ubuntu-20.04
	steps:
	- uses: actions/checkout@v1
	- name: Set up Python 3.8
	uses: actions/setup-python@v2
	with:
	python-version: 3.8

	- name: Install dependencies
	run: \|
	pip install --upgrade pip
	pip install wheel setuptools

	- name: Build wheel
	run: python setup.py bdist_wheel --universal

	- name: Upload Python wheel
	uses: actions/upload-artifact@v2
	with:
	name: Python wheel
	path: ${{github.workspace}}/dist/lungtumormask-*.whl
	if-no-files-found: error

	test:
	needs: build
	runs-on: ${{ matrix.os }}
	strategy:
	matrix:
	os: [windows-2019, ubuntu-20.04, macos-11]
	python-version: ["3.8", "3.9", "3.10"]

	steps:
	- uses: actions/checkout@v1
	- name: Set up Python ${{ matrix.python-version }}
	uses: actions/setup-python@v2
	with:
	python-version: ${{ matrix.python-version }}

	- name: Download artifact
	uses: actions/download-artifact@v3
	with:
	name: "Python wheel"

	- name: Install software
	run: pip install -U --find-links=${{github.workspace}} lungtumormask

	- name: Download test data
	run: \|
	pip install --upgrade --no-cache-dir wget
	mkdir samples
	cd samples
	python -m wget https://github.com/VemundFredriksen/LungTumorMask/releases/download/0.0.1/lung_001.nii.gz

	- name: Test CLI
	run: lungtumormask --help

	- name: Test inference
	run: lungtumormask samples/lung_001.nii.gz mask_001.nii.gz --threshold 0.3 --lung-filter --radius 3 --batch-size 8

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