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pyproject.toml
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pyproject.toml
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[tool.poetry]
name = "delirium-risk-predictor"
version = "0.1.0"
description = "An application to predict risk of delirium at time of admission."
authors = ["Vector AI Engineering <[email protected]>"]
repository = "https://github.com/VectorInstitute/delirium-risk-predictor"
license = "Apache-2.0"
packages = [
{ include = "api" },
]
readme = "README.md"
[tool.poetry.dependencies]
python = "^3.9"
fastapi = "^0.115.0"
xgboost = "^2.1.0"
numpy = "^2.0.0"
pydantic = "^2.7.4"
uvicorn = "^0.30.1"
starlette = "^0.40.0"
[tool.poetry.group.test]
optional = true
[tool.poetry.group.test.dependencies]
pytest = "^7.1.1"
pre-commit = "^4.0.0"
pytest-cov = "^3.0.0"
codecov = "^2.1.13"
mypy = "^1.7.0"
ruff = "^0.2.0"
pip-audit = "^2.7.1"
[tool.mypy]
ignore_missing_imports = true
install_types = true
pretty = true
namespace_packages = true
explicit_package_bases = true
non_interactive = true
warn_unused_configs = true
allow_any_generics = false
allow_subclassing_any = false
allow_untyped_calls = false
allow_untyped_defs = false
allow_incomplete_defs = false
check_untyped_defs = true
allow_untyped_decorators = false
warn_redundant_casts = true
warn_unused_ignores = true
warn_return_any = true
implicit_reexport = false
strict_equality = true
extra_checks = true
[tool.ruff]
include = ["*.py", "pyproject.toml", "*.ipynb"]
line-length = 88
[tool.ruff.format]
quote-style = "double"
indent-style = "space"
docstring-code-format = true
[tool.ruff.lint]
select = [
"A", # flake8-builtins
"B", # flake8-bugbear
"COM", # flake8-commas
"C4", # flake8-comprehensions
"RET", # flake8-return
"SIM", # flake8-simplify
"ICN", # flake8-import-conventions
"Q", # flake8-quotes
"RSE", # flake8-raise
"D", # pydocstyle
"E", # pycodestyle
"F", # pyflakes
"I", # isort
"W", # pycodestyle
"N", # pep8-naming
"ERA", # eradicate
"PL", # pylint
]
fixable = ["A", "B", "COM", "C4", "RET", "SIM", "ICN", "Q", "RSE", "D", "E", "F", "I", "W", "N", "ERA", "PL"]
ignore = [
"B905", # `zip()` without an explicit `strict=` parameter
"E501", # line too long
"D203", # 1 blank line required before class docstring
"D213", # Multi-line docstring summary should start at the second line
"PLR2004", # Replace magic number with named constant
"PLR0913", # Too many arguments
"COM812", # Missing trailing comma
]
# Ignore import violations in all `__init__.py` files.
[tool.ruff.lint.per-file-ignores]
"__init__.py" = ["E402", "F401", "F403", "F811"]
[tool.ruff.lint.pep8-naming]
ignore-names = ["X*", "setUp"]
[tool.ruff.lint.isort]
lines-after-imports = 2
[tool.ruff.lint.pydocstyle]
convention = "numpy"
[tool.ruff.lint.pycodestyle]
max-doc-length = 88
[build-system]
requires = ["poetry-core"]
build-backend = "poetry.core.masonry.api"