diff --git a/searchindex.js b/searchindex.js index 218e4d4..9b41952 100644 --- a/searchindex.js +++ b/searchindex.js @@ -1 +1 @@ -Search.setIndex({"alltitles": {"API Reference": [[0, "api-reference"]], "Coding guidelines": [[1, "coding-guidelines"]], "Contents:": [[2, null]], "Contributing": [[3, "contributing"]], "Contributing to cycquery": [[1, "contributing-to-cycquery"]], "Example 1. Get all female patients discharged in 2014 (limit to 100 rows).": [[64, "Example-1.-Get-all-female-patients-discharged-in-2014-(limit-to-100-rows)."]], "Example 1. Get all male patients with a mortality outcome.": [[66, "Example-1.-Get-all-male-patients-with-a-mortality-outcome."]], "Example 1. Get all patient admissions from 2021 or later (approx year of admission)": [[67, "Example-1.-Get-all-patient-admissions-from-2021-or-later-(approx-year-of-admission)"]], "Example 1. Get all patient visits in or after 2010.": [[68, "Example-1.-Get-all-patient-visits-in-or-after-2010."]], "Example 1. Get all patient visits that ended in a mortality outcome in or after 2010.": [[68, "Example-1.-Get-all-patient-visits-that-ended-in-a-mortality-outcome-in-or-after-2010."]], "Example 1a. Create a table with only one hospitalization per patient, keeping the most recent encounter for each patient. Sort the dataset by patient_id_hashed and discharge_date_time, and then keep the recent record.": [[65, "Example-1a.-Create-a-table-with-only-one-hospitalization-per-patient,-keeping-the-most-recent-encounter-for-each-patient.-Sort-the-dataset-by-patient_id_hashed-and-discharge_date_time,-and-then-keep-the-recent-record."]], "Example 1b. From the above set of encounters, take a subset of patients who were discharged between April 1, 2015 and March 31, 2016.": [[65, "Example-1b.-From-the-above-set-of-encounters,-take-a-subset-of-patients-who-were-discharged-between-April-1,-2015-and-March-31,-2016."]], "Example 1c. From the above set of encounters, get the total number of admissions for each hospital.": [[65, "Example-1c.-From-the-above-set-of-encounters,-get-the-total-number-of-admissions-for-each-hospital."]], "Example 2. Get all female patient encounters with diagnoses (gastroenteritis in ICD-9 long title).": [[66, "Example-2.-Get-all-female-patient-encounters-with-diagnoses-(gastroenteritis-in-ICD-9-long-title)."]], "Example 2. Get all measurements for female patient visits with sepsis diagnoses, that ended in a mortality outcome.": [[68, "Example-2.-Get-all-measurements-for-female-patient-visits-with-sepsis-diagnoses,-that-ended-in-a-mortality-outcome."]], "Example 2. Get all patient encounters with diagnoses (schizophrenia in ICD-10 long title), in the year 2015.": [[67, "Example-2.-Get-all-patient-encounters-with-diagnoses-(schizophrenia-in-ICD-10-long-title),-in-the-year-2015."]], "Example 2. Get all patient encounters with diagnoses (schizophrenia in diagnosisstring), discharged in the year 2015.": [[64, "Example-2.-Get-all-patient-encounters-with-diagnoses-(schizophrenia-in-diagnosisstring),-discharged-in-the-year-2015."]], "Example 2. Get measurements for all visits in or after 2020.": [[68, "Example-2.-Get-measurements-for-all-visits-in-or-after-2020."]], "Example 2a. How many sodium tests were placed between Apr 1, 2015 and May 31, 2015 at hospital 101?": [[65, "Example-2a.-How-many-sodium-tests-were-placed-between-Apr-1,-2015-and-May-31,-2015-at-hospital-101?"]], "Example 3. Advanced - uses ConditionRegexMatch from cycquery.ops. Get all patient encounters with diagnoses (ICD-9 long title contains schizophrenia and chronic ), in the year 2015.": [[67, "Example-3.-Advanced---uses-ConditionRegexMatch-from-cycquery.ops.-Get-all-patient-encounters-with-diagnoses-(ICD-9-long-title-contains-schizophrenia-and-chronic-),-in-the-year-2015."]], "Example 3. Get potassium lab tests for female patients.": [[66, "Example-3.-Get-potassium-lab-tests-for-female-patients."]], "Example 3. Get potassium lab tests for patients discharged in the year 2014, for all teaching hospitals.": [[64, "Example-3.-Get-potassium-lab-tests-for-patients-discharged-in-the-year-2014,-for-all-teaching-hospitals."]], "Example 4. Get AaDO2 carevue chart events for male patients that have a valuenum of less than 20.": [[66, "Example-4.-Get-AaDO2-carevue-chart-events-for-male-patients-that-have-a-valuenum-of-less-than-20."]], "Example 4. Get glucose medications (substring search) for female patients discharged in 2014.": [[64, "Example-4.-Get-glucose-medications-(substring-search)-for-female-patients-discharged-in-2014."]], "Example 4. Get routine vital signs for patients from year 2015.": [[67, "Example-4.-Get-routine-vital-signs-for-patients-from-year-2015."]], "Example 5. Get hemoglobin lab tests for patients from year 2009.": [[67, "Example-5.-Get-hemoglobin-lab-tests-for-patients-from-year-2009."]], "Example 6. Get radiology reports and filter on keywords lymphadenopathy and infectious occurring together from year 2009.": [[67, "Example-6.-Get-radiology-reports-and-filter-on-keywords-lymphadenopathy-and-infectious-occurring-together-from-year-2009."]], "Example 7. Get all female patient encounters from year 2015, and return batches partitioned and indexed on subject_id.": [[67, "Example-7.-Get-all-female-patient-encounters-from-year-2015,-and-return-batches-partitioned-and-indexed-on-subject_id."]], "Example 8. Running a raw SQL string.": [[67, "Example-8.-Running-a-raw-SQL-string."]], "GEMINI tutorial": [[65, "GEMINI-tutorial"]], "Imports and instantiate EICUQuerier": [[64, "Imports-and-instantiate-EICUQuerier"]], "Imports and instantiate GEMINIQuerier.": [[65, "Imports-and-instantiate-GEMINIQuerier."]], "Imports and instantiate MIMICIIIQuerier": [[66, "Imports-and-instantiate-MIMICIIIQuerier"]], "Imports and instantiate MIMICIVQuerier": [[67, "Imports-and-instantiate-MIMICIVQuerier"]], "Imports and instantiate OMOPQuerier.": [[68, "Imports-and-instantiate-OMOPQuerier."], [68, "id1"]], "Installing cycquery using pip": [[3, "installing-cycquery-using-pip"]], "MIMIC-III tutorial": [[66, "MIMIC-III-tutorial"]], "MIMIC-IV tutorial": [[67, "MIMIC-IV-tutorial"]], "OMOP tutorial": [[68, "OMOP-tutorial"]], "Pre-commit hooks": [[1, "pre-commit-hooks"]], "Query postgresql database": [[3, "query-postgresql-database"]], "Tutorials": [[63, "tutorials"]], "Using poetry": [[3, "using-poetry"]], "Welcome to 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"teach": 64, "test": [64, 65, 66, 67], "than": 66, "titl": [66, 67], "togeth": 67, "total": 65, "trim": 60, "tutori": [63, 64, 65, 66, 67, 68], "union": 61, "us": [3, 67], "valuenum": 66, "visit": 68, "vital": 67, "welcom": 2, "were": 65, "who": 65, "year": [64, 67]}}) \ No newline at end of file +Search.setIndex({"alltitles": {"API Reference": [[0, "api-reference"]], "Coding guidelines": [[1, "coding-guidelines"]], "Contents:": [[2, null]], "Contributing": [[3, "contributing"]], "Contributing to cycquery": [[1, "contributing-to-cycquery"]], "Example 1. Get all female patients discharged in 2014 (limit to 100 rows).": [[64, "Example-1.-Get-all-female-patients-discharged-in-2014-(limit-to-100-rows)."]], "Example 1. Get all male patients with a mortality outcome.": [[66, "Example-1.-Get-all-male-patients-with-a-mortality-outcome."]], "Example 1. Get all patient admissions from 2021 or later (approx year of admission)": [[67, "Example-1.-Get-all-patient-admissions-from-2021-or-later-(approx-year-of-admission)"]], "Example 1. Get all patient visits in or after 2010.": [[68, "Example-1.-Get-all-patient-visits-in-or-after-2010."]], "Example 1. Get all patient visits that ended in a mortality outcome in or after 2010.": [[68, "Example-1.-Get-all-patient-visits-that-ended-in-a-mortality-outcome-in-or-after-2010."]], "Example 1a. Create a table with only one hospitalization per patient, keeping the most recent encounter for each patient. Sort the dataset by patient_id_hashed and discharge_date_time, and then keep the recent record.": [[65, "Example-1a.-Create-a-table-with-only-one-hospitalization-per-patient,-keeping-the-most-recent-encounter-for-each-patient.-Sort-the-dataset-by-patient_id_hashed-and-discharge_date_time,-and-then-keep-the-recent-record."]], "Example 1b. From the above set of encounters, take a subset of patients who were discharged between April 1, 2015 and March 31, 2016.": [[65, "Example-1b.-From-the-above-set-of-encounters,-take-a-subset-of-patients-who-were-discharged-between-April-1,-2015-and-March-31,-2016."]], "Example 1c. From the above set of encounters, get the total number of admissions for each hospital.": [[65, "Example-1c.-From-the-above-set-of-encounters,-get-the-total-number-of-admissions-for-each-hospital."]], "Example 2. Get all female patient encounters with diagnoses (gastroenteritis in ICD-9 long title).": [[66, "Example-2.-Get-all-female-patient-encounters-with-diagnoses-(gastroenteritis-in-ICD-9-long-title)."]], "Example 2. Get all measurements for female patient visits with sepsis diagnoses, that ended in a mortality outcome.": [[68, "Example-2.-Get-all-measurements-for-female-patient-visits-with-sepsis-diagnoses,-that-ended-in-a-mortality-outcome."]], "Example 2. Get all patient encounters with diagnoses (schizophrenia in ICD-10 long title), in the year 2015.": [[67, "Example-2.-Get-all-patient-encounters-with-diagnoses-(schizophrenia-in-ICD-10-long-title),-in-the-year-2015."]], "Example 2. Get all patient encounters with diagnoses (schizophrenia in diagnosisstring), discharged in the year 2015.": [[64, "Example-2.-Get-all-patient-encounters-with-diagnoses-(schizophrenia-in-diagnosisstring),-discharged-in-the-year-2015."]], "Example 2. Get measurements for all visits in or after 2020.": [[68, "Example-2.-Get-measurements-for-all-visits-in-or-after-2020."]], "Example 2a. How many sodium tests were placed between Apr 1, 2015 and May 31, 2015 at hospital 101?": [[65, "Example-2a.-How-many-sodium-tests-were-placed-between-Apr-1,-2015-and-May-31,-2015-at-hospital-101?"]], "Example 3. Advanced - uses ConditionRegexMatch from cycquery.ops. Get all patient encounters with diagnoses (ICD-9 long title contains schizophrenia and chronic ), in the year 2015.": [[67, "Example-3.-Advanced---uses-ConditionRegexMatch-from-cycquery.ops.-Get-all-patient-encounters-with-diagnoses-(ICD-9-long-title-contains-schizophrenia-and-chronic-),-in-the-year-2015."]], "Example 3. Get potassium lab tests for female patients.": [[66, "Example-3.-Get-potassium-lab-tests-for-female-patients."]], "Example 3. Get potassium lab tests for patients discharged in the year 2014, for all teaching hospitals.": [[64, "Example-3.-Get-potassium-lab-tests-for-patients-discharged-in-the-year-2014,-for-all-teaching-hospitals."]], "Example 4. Get AaDO2 carevue chart events for male patients that have a valuenum of less than 20.": [[66, "Example-4.-Get-AaDO2-carevue-chart-events-for-male-patients-that-have-a-valuenum-of-less-than-20."]], "Example 4. Get glucose medications (substring search) for female patients discharged in 2014.": [[64, "Example-4.-Get-glucose-medications-(substring-search)-for-female-patients-discharged-in-2014."]], "Example 4. Get routine vital signs for patients from year 2015.": [[67, "Example-4.-Get-routine-vital-signs-for-patients-from-year-2015."]], "Example 5. Get hemoglobin lab tests for patients from year 2009.": [[67, "Example-5.-Get-hemoglobin-lab-tests-for-patients-from-year-2009."]], "Example 6. Get radiology reports and filter on keywords lymphadenopathy and infectious occurring together from year 2009.": [[67, "Example-6.-Get-radiology-reports-and-filter-on-keywords-lymphadenopathy-and-infectious-occurring-together-from-year-2009."]], "Example 7. Get all female patient encounters from year 2015, and return batches partitioned and indexed on subject_id.": [[67, "Example-7.-Get-all-female-patient-encounters-from-year-2015,-and-return-batches-partitioned-and-indexed-on-subject_id."]], "Example 8. Running a raw SQL string.": [[67, "Example-8.-Running-a-raw-SQL-string."]], "GEMINI tutorial": [[65, "GEMINI-tutorial"]], "Imports and instantiate EICUQuerier": [[64, "Imports-and-instantiate-EICUQuerier"]], "Imports and instantiate GEMINIQuerier.": [[65, "Imports-and-instantiate-GEMINIQuerier."]], "Imports and instantiate MIMICIIIQuerier": [[66, "Imports-and-instantiate-MIMICIIIQuerier"]], "Imports and instantiate MIMICIVQuerier": [[67, "Imports-and-instantiate-MIMICIVQuerier"]], "Imports and instantiate OMOPQuerier.": [[68, "Imports-and-instantiate-OMOPQuerier."], [68, "id1"]], "Installing cycquery using pip": [[3, "installing-cycquery-using-pip"]], "MIMIC-III tutorial": [[66, "MIMIC-III-tutorial"]], "MIMIC-IV tutorial": [[67, "MIMIC-IV-tutorial"]], "OMOP tutorial": [[68, "OMOP-tutorial"]], "Pre-commit hooks": [[1, "pre-commit-hooks"]], "Query postgresql database": [[3, "query-postgresql-database"]], "Tutorials": [[63, "tutorials"]], "Using poetry": [[3, "using-poetry"]], "Welcome to 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"cycquery.ops.ConditionGreaterThan", "cycquery.ops.ConditionIn", "cycquery.ops.ConditionInMonths", "cycquery.ops.ConditionInYears", "cycquery.ops.ConditionLessThan", "cycquery.ops.ConditionLike", "cycquery.ops.ConditionRegexMatch", "cycquery.ops.ConditionStartsWith", "cycquery.ops.ConditionSubstring", "cycquery.ops.Count", "cycquery.ops.Distinct", "cycquery.ops.Drop", "cycquery.ops.DropEmpty", "cycquery.ops.DropNulls", "cycquery.ops.ExtractTimestampComponent", "cycquery.ops.FillNull", "cycquery.ops.GroupByAggregate", "cycquery.ops.Join", "cycquery.ops.Keep", "cycquery.ops.Limit", "cycquery.ops.Literal", "cycquery.ops.Or", "cycquery.ops.OrderBy", "cycquery.ops.QueryOp", "cycquery.ops.RandomizeOrder", "cycquery.ops.Rename", "cycquery.ops.Reorder", "cycquery.ops.ReorderAfter", "cycquery.ops.Sequential", "cycquery.ops.Substring", "cycquery.ops.Trim", "cycquery.ops.Union", "cycquery", "Tutorials", "eICU-CRD tutorial", "GEMINI tutorial", "MIMIC-III tutorial", "MIMIC-IV tutorial", "OMOP tutorial"], "titleterms": {"": 2, "1": [64, 65, 66, 67, 68], "10": 67, "100": 64, "101": 65, "1a": 65, "1b": 65, "1c": 65, "2": [64, 66, 67, 68], "20": 66, "2009": 67, "2010": 68, "2014": 64, "2015": [64, 65, 67], "2016": 65, "2020": 68, "2021": 67, "2a": 65, "3": [64, 66, 67], "31": 65, "4": [64, 66, 67], "5": 67, "6": 67, "7": 67, "8": 67, "9": [66, 67], "And": 23, "Or": 51, "aado2": 66, "abov": 65, "addcolumn": 19, "adddeltacolumn": 20, "adddeltaconst": 21, "addnumer": 22, "admiss": [65, 67], "advanc": 67, "after": 68, "all": [64, 66, 67, 68], "api": [0, 62], "appli": 24, "approx": 67, "apr": 65, "april": 65, "base": [4, 5], "batch": 67, "between": 65, "carevu": 66, "cast": 25, "chart": 66, "chronic": 67, "code": 1, "commit": 1, "conditionafterd": 26, "conditionbefored": 27, "conditionendswith": 28, "conditionequ": 29, "conditiongreaterthan": 30, "conditionin": 31, "conditioninmonth": 32, "conditioninyear": 33, "conditionlessthan": 34, "conditionlik": 35, "conditionregexmatch": [36, 67], "conditionstartswith": 37, "conditionsubstr": 38, "contain": 67, "content": 2, "contribut": [1, 3], "count": 39, "crd": 64, "creat": 65, "cycqueri": [1, 2, 3, 4, 5, 6, 7, 8, 9, 10, 11, 12, 13, 14, 15, 16, 17, 18, 19, 20, 21, 22, 23, 24, 25, 26, 27, 28, 29, 30, 31, 32, 33, 34, 35, 36, 37, 38, 39, 40, 41, 42, 43, 44, 45, 46, 47, 48, 49, 50, 51, 52, 53, 54, 55, 56, 57, 58, 59, 60, 61, 62, 67], "databas": 3, "dataset": [62, 65], "datasetqueri": 5, "develop": 3, "diagnos": [64, 66, 67, 68], "diagnosisstr": 64, "discharg": [64, 65], "discharge_date_tim": 65, "distinct": 40, "document": [2, 3], "drop": 41, "dropempti": 42, "dropnul": 43, "each": 65, "eicu": [6, 7, 64], "eicuqueri": [7, 64], "encount": [64, 65, 66, 67], "end": 68, "event": 66, "exampl": [64, 65, 66, 67, 68], "extracttimestampcompon": 44, "femal": [64, 66, 67, 68], "fillnul": 45, "filter": 67, "from": [65, 67], "gastroenter": 66, "gemini": [8, 9, 65], "geminiqueri": [9, 65], "get": [3, 64, 65, 66, 67, 68], "glucos": 64, "groupbyaggreg": 46, "guidelin": 1, "have": 66, "hemoglobin": 67, "hook": 1, "hospit": [64, 65], "how": 65, "icd": [66, 67], "iii": 66, "import": [64, 65, 66, 67, 68], "index": 67, "infecti": 67, "instal": 3, "instanti": [64, 65, 66, 67, 68], "interfac": [10, 11], "iv": 67, "join": 47, "keep": [48, 65], "keyword": 67, "lab": [64, 66, 67], "later": 67, "less": 66, "limit": [49, 64], "liter": 50, "long": [66, 67], "lymphadenopathi": 67, "mai": 65, "male": 66, "mani": 65, "march": 65, "measur": 68, "medic": 64, "mimic": [66, 67], "mimiciii": [12, 13], "mimiciiiqueri": [13, 66], "mimiciv": [14, 15], "mimicivqueri": [15, 67], "mortal": [66, 68], "most": 65, "number": 65, "occur": 67, "omop": [16, 17, 68], "omopqueri": [17, 68], "one": 65, "onli": 65, "op": [18, 19, 20, 21, 22, 23, 24, 25, 26, 27, 28, 29, 30, 31, 32, 33, 34, 35, 36, 37, 38, 39, 40, 41, 42, 43, 44, 45, 46, 47, 48, 49, 50, 51, 52, 53, 54, 55, 56, 57, 58, 59, 60, 61, 67], "orderbi": 52, "outcom": [66, 68], "partit": 67, "patient": [64, 65, 66, 67, 68], "patient_id_hash": 65, "per": 65, "pip": 3, "place": 65, "poetri": 3, "postgresql": 3, "potassium": [64, 66], "pre": 1, "queri": 3, "queryinterfac": 11, "queryop": 53, "radiologi": 67, "randomizeord": 54, "raw": 67, "recent": 65, "record": 65, "refer": 0, "renam": 55, "reorder": 56, "reorderaft": 57, "report": 67, "return": 67, "routin": 67, "row": 64, "run": 67, "schizophrenia": [64, 67], "search": 64, "sepsi": 68, "sequenti": 58, "set": 65, "sign": 67, "sodium": 65, "sort": 65, "sql": 67, "start": 3, "string": 67, "subject_id": 67, "subset": 65, "substr": [59, 64], "tabl": 65, "take": 65, "teach": 64, "test": [64, 65, 66, 67], "than": 66, "titl": [66, 67], "togeth": 67, "total": 65, "trim": 60, "tutori": [63, 64, 65, 66, 67, 68], "union": 61, "us": [3, 67], "valuenum": 66, "visit": 68, "vital": 67, "welcom": 2, "were": 65, "who": 65, "year": [64, 67]}}) \ No newline at end of file diff --git a/tutorials/eicu.html b/tutorials/eicu.html index 6cd2bd2..89f0d34 100644 --- a/tutorials/eicu.html +++ b/tutorials/eicu.html @@ -615,7 +615,7 @@
-2024-11-19 20:15:19,153 INFO cycquery.orm - Database setup, ready to run queries!
+2024-11-20 00:34:49,450 INFO cycquery.orm - Database setup, ready to run queries!
@@ -679,7 +679,7 @@ Example 1. Get all female patients discharged in 2014 (limit to 100 rows).
-2024-11-19 20:15:20,622 INFO cycquery.orm - Query returned successfully!
+2024-11-20 00:34:50,408 INFO cycquery.orm - Query returned successfully!
@@ -687,7 +687,7 @@ Example 1. Get all female patients discharged in 2014 (limit to 100 rows).
-2024-11-19 20:15:20,624 INFO cycquery.utils.profile - Finished executing function run_query in 0.704197 s
+2024-11-20 00:34:50,410 INFO cycquery.utils.profile - Finished executing function run_query in 0.203213 s
@@ -722,7 +722,7 @@ Example 2. Get all patient encounters with diagnoses (
-2024-11-19 20:15:23,335 INFO cycquery.orm - Query returned successfully!
+2024-11-20 00:34:52,697 INFO cycquery.orm - Query returned successfully!
@@ -730,7 +730,7 @@ Example 2. Get all patient encounters with diagnoses (
-2024-11-19 20:15:23,337 INFO cycquery.utils.profile - Finished executing function run_query in 2.682319 s
+2024-11-20 00:34:52,699 INFO cycquery.utils.profile - Finished executing function run_query in 2.256952 s
@@ -771,7 +771,7 @@ Example 3. Get potassium lab tests for patients discharged in the year 2014,
-2024-11-19 20:15:23,844 INFO cycquery.orm - Query returned successfully!
+2024-11-20 00:34:53,885 INFO cycquery.orm - Query returned successfully!
@@ -779,7 +779,7 @@ Example 3. Get potassium lab tests for patients discharged in the year 2014,
-2024-11-19 20:15:23,846 INFO cycquery.utils.profile - Finished executing function run_query in 0.464190 s
+2024-11-20 00:34:53,887 INFO cycquery.utils.profile - Finished executing function run_query in 1.146802 s
@@ -818,7 +818,7 @@ Example 4. Get glucose medications (substring search) for female patients di
-2024-11-19 20:15:35,178 INFO cycquery.orm - Query returned successfully!
+2024-11-20 00:34:55,228 INFO cycquery.orm - Query returned successfully!
@@ -826,7 +826,7 @@ Example 4. Get glucose medications (substring search) for female patients di
-2024-11-19 20:15:35,179 INFO cycquery.utils.profile - Finished executing function run_query in 11.294857 s
+2024-11-20 00:34:55,230 INFO cycquery.utils.profile - Finished executing function run_query in 1.303408 s
diff --git a/tutorials/eicu.ipynb b/tutorials/eicu.ipynb
index 331d165..c6c8f7b 100644
--- a/tutorials/eicu.ipynb
+++ b/tutorials/eicu.ipynb
@@ -35,10 +35,10 @@
"id": "75a140e0-fb27-4319-862f-be54397abe5c",
"metadata": {
"execution": {
- "iopub.execute_input": "2024-11-20T01:15:14.790414Z",
- "iopub.status.busy": "2024-11-20T01:15:14.789395Z",
- "iopub.status.idle": "2024-11-20T01:15:19.899663Z",
- "shell.execute_reply": "2024-11-20T01:15:19.897966Z"
+ "iopub.execute_input": "2024-11-20T05:34:47.408959Z",
+ "iopub.status.busy": "2024-11-20T05:34:47.407985Z",
+ "iopub.status.idle": "2024-11-20T05:34:50.186107Z",
+ "shell.execute_reply": "2024-11-20T05:34:50.184172Z"
},
"tags": []
},
@@ -47,7 +47,7 @@
"name": "stderr",
"output_type": "stream",
"text": [
- "2024-11-19 20:15:19,153 \u001b[1;37mINFO\u001b[0m cycquery.orm - Database setup, ready to run queries!\n"
+ "2024-11-20 00:34:49,450 \u001b[1;37mINFO\u001b[0m cycquery.orm - Database setup, ready to run queries!\n"
]
},
{
@@ -124,10 +124,10 @@
"id": "c1efa964-8978-4a0e-9892-5ea4ce9953a3",
"metadata": {
"execution": {
- "iopub.execute_input": "2024-11-20T01:15:19.907386Z",
- "iopub.status.busy": "2024-11-20T01:15:19.906087Z",
- "iopub.status.idle": "2024-11-20T01:15:20.631620Z",
- "shell.execute_reply": "2024-11-20T01:15:20.629925Z"
+ "iopub.execute_input": "2024-11-20T05:34:50.194038Z",
+ "iopub.status.busy": "2024-11-20T05:34:50.192776Z",
+ "iopub.status.idle": "2024-11-20T05:34:50.418150Z",
+ "shell.execute_reply": "2024-11-20T05:34:50.416241Z"
},
"tags": []
},
@@ -136,14 +136,14 @@
"name": "stderr",
"output_type": "stream",
"text": [
- "2024-11-19 20:15:20,622 \u001b[1;37mINFO\u001b[0m cycquery.orm - Query returned successfully!\n"
+ "2024-11-20 00:34:50,408 \u001b[1;37mINFO\u001b[0m cycquery.orm - Query returned successfully!\n"
]
},
{
"name": "stderr",
"output_type": "stream",
"text": [
- "2024-11-19 20:15:20,624 \u001b[1;37mINFO\u001b[0m cycquery.utils.profile - Finished executing function run_query in 0.704197 s\n"
+ "2024-11-20 00:34:50,410 \u001b[1;37mINFO\u001b[0m cycquery.utils.profile - Finished executing function run_query in 0.203213 s\n"
]
},
{
@@ -180,10 +180,10 @@
"id": "a7ab5fa3-e26b-47a7-818f-1bf367a55760",
"metadata": {
"execution": {
- "iopub.execute_input": "2024-11-20T01:15:20.639465Z",
- "iopub.status.busy": "2024-11-20T01:15:20.637798Z",
- "iopub.status.idle": "2024-11-20T01:15:23.344802Z",
- "shell.execute_reply": "2024-11-20T01:15:23.343082Z"
+ "iopub.execute_input": "2024-11-20T05:34:50.425440Z",
+ "iopub.status.busy": "2024-11-20T05:34:50.424534Z",
+ "iopub.status.idle": "2024-11-20T05:34:52.706118Z",
+ "shell.execute_reply": "2024-11-20T05:34:52.704480Z"
},
"tags": []
},
@@ -192,14 +192,14 @@
"name": "stderr",
"output_type": "stream",
"text": [
- "2024-11-19 20:15:23,335 \u001b[1;37mINFO\u001b[0m cycquery.orm - Query returned successfully!\n"
+ "2024-11-20 00:34:52,697 \u001b[1;37mINFO\u001b[0m cycquery.orm - Query returned successfully!\n"
]
},
{
"name": "stderr",
"output_type": "stream",
"text": [
- "2024-11-19 20:15:23,337 \u001b[1;37mINFO\u001b[0m cycquery.utils.profile - Finished executing function run_query in 2.682319 s\n"
+ "2024-11-20 00:34:52,699 \u001b[1;37mINFO\u001b[0m cycquery.utils.profile - Finished executing function run_query in 2.256952 s\n"
]
},
{
@@ -236,10 +236,10 @@
"id": "24043abc-1878-4e00-8229-36d4a0368b98",
"metadata": {
"execution": {
- "iopub.execute_input": "2024-11-20T01:15:23.351965Z",
- "iopub.status.busy": "2024-11-20T01:15:23.351100Z",
- "iopub.status.idle": "2024-11-20T01:15:23.853586Z",
- "shell.execute_reply": "2024-11-20T01:15:23.851897Z"
+ "iopub.execute_input": "2024-11-20T05:34:52.713618Z",
+ "iopub.status.busy": "2024-11-20T05:34:52.712403Z",
+ "iopub.status.idle": "2024-11-20T05:34:53.894862Z",
+ "shell.execute_reply": "2024-11-20T05:34:53.892958Z"
},
"tags": []
},
@@ -248,14 +248,14 @@
"name": "stderr",
"output_type": "stream",
"text": [
- "2024-11-19 20:15:23,844 \u001b[1;37mINFO\u001b[0m cycquery.orm - Query returned successfully!\n"
+ "2024-11-20 00:34:53,885 \u001b[1;37mINFO\u001b[0m cycquery.orm - Query returned successfully!\n"
]
},
{
"name": "stderr",
"output_type": "stream",
"text": [
- "2024-11-19 20:15:23,846 \u001b[1;37mINFO\u001b[0m cycquery.utils.profile - Finished executing function run_query in 0.464190 s\n"
+ "2024-11-20 00:34:53,887 \u001b[1;37mINFO\u001b[0m cycquery.utils.profile - Finished executing function run_query in 1.146802 s\n"
]
},
{
@@ -298,10 +298,10 @@
"id": "f6142f27-e8d1-453c-bfe2-2265d9ff1914",
"metadata": {
"execution": {
- "iopub.execute_input": "2024-11-20T01:15:23.860813Z",
- "iopub.status.busy": "2024-11-20T01:15:23.859930Z",
- "iopub.status.idle": "2024-11-20T01:15:35.187129Z",
- "shell.execute_reply": "2024-11-20T01:15:35.185510Z"
+ "iopub.execute_input": "2024-11-20T05:34:53.903171Z",
+ "iopub.status.busy": "2024-11-20T05:34:53.901436Z",
+ "iopub.status.idle": "2024-11-20T05:34:55.238566Z",
+ "shell.execute_reply": "2024-11-20T05:34:55.236622Z"
},
"tags": []
},
@@ -310,14 +310,14 @@
"name": "stderr",
"output_type": "stream",
"text": [
- "2024-11-19 20:15:35,178 \u001b[1;37mINFO\u001b[0m cycquery.orm - Query returned successfully!\n"
+ "2024-11-20 00:34:55,228 \u001b[1;37mINFO\u001b[0m cycquery.orm - Query returned successfully!\n"
]
},
{
"name": "stderr",
"output_type": "stream",
"text": [
- "2024-11-19 20:15:35,179 \u001b[1;37mINFO\u001b[0m cycquery.utils.profile - Finished executing function run_query in 11.294857 s\n"
+ "2024-11-20 00:34:55,230 \u001b[1;37mINFO\u001b[0m cycquery.utils.profile - Finished executing function run_query in 1.303408 s\n"
]
},
{
diff --git a/tutorials/mimiciii.html b/tutorials/mimiciii.html
index 6a8f988..ab685c2 100644
--- a/tutorials/mimiciii.html
+++ b/tutorials/mimiciii.html
@@ -615,7 +615,7 @@ Imports and instantiate
-2024-11-19 20:15:51,462 INFO cycquery.orm - Database setup, ready to run queries!
+2024-11-20 00:35:08,458 INFO cycquery.orm - Database setup, ready to run queries!
@@ -649,7 +649,7 @@ Example 1. Get all male patients with a mortality outcome.
-2024-11-19 20:15:58,015 INFO cycquery.orm - Query returned successfully!
+2024-11-20 00:35:14,769 INFO cycquery.orm - Query returned successfully!
@@ -657,7 +657,7 @@ Example 1. Get all male patients with a mortality outcome.
-2024-11-19 20:15:58,017 INFO cycquery.utils.profile - Finished executing function run_query in 0.398204 s
+2024-11-20 00:35:14,770 INFO cycquery.utils.profile - Finished executing function run_query in 0.242612 s
@@ -697,7 +697,7 @@ Example 2. Get all female patient encounters with diagnoses (
-2024-11-19 20:16:02,491 INFO cycquery.orm - Query returned successfully!
+2024-11-20 00:35:21,001 INFO cycquery.orm - Query returned successfully!
@@ -705,7 +705,7 @@ Example 2. Get all female patient encounters with diagnoses (
-2024-11-19 20:16:02,493 INFO cycquery.utils.profile - Finished executing function run_query in 4.424502 s
+2024-11-20 00:35:21,003 INFO cycquery.utils.profile - Finished executing function run_query in 6.181985 s
@@ -737,7 +737,7 @@ Example 3. Get potassium lab tests for female patients.
-2024-11-19 20:16:03,105 INFO cycquery.orm - Query returned successfully!
+2024-11-20 00:35:21,365 INFO cycquery.orm - Query returned successfully!
@@ -745,7 +745,7 @@ Example 3. Get potassium lab tests for female patients.
-2024-11-19 20:16:03,107 INFO cycquery.utils.profile - Finished executing function run_query in 0.573849 s
+2024-11-20 00:35:21,367 INFO cycquery.utils.profile - Finished executing function run_query in 0.315991 s
@@ -782,7 +782,7 @@ Example 4. Get AaDO2 carevue chart events for male patients that have a
-2024-11-19 20:43:56,958 INFO cycquery.orm - Query returned successfully!
+2024-11-20 01:16:35,253 INFO cycquery.orm - Query returned successfully!
@@ -790,7 +790,7 @@ Example 4. Get AaDO2 carevue chart events for male patients that have a
-2024-11-19 20:43:56,961 INFO cycquery.utils.profile - Finished executing function run_query in 1673.789103 s
+2024-11-20 01:16:35,255 INFO cycquery.utils.profile - Finished executing function run_query in 2473.821842 s
diff --git a/tutorials/mimiciii.ipynb b/tutorials/mimiciii.ipynb
index a5130a7..0fc02ba 100644
--- a/tutorials/mimiciii.ipynb
+++ b/tutorials/mimiciii.ipynb
@@ -35,10 +35,10 @@
"id": "75a140e0-fb27-4319-862f-be54397abe5c",
"metadata": {
"execution": {
- "iopub.execute_input": "2024-11-20T01:15:41.671450Z",
- "iopub.status.busy": "2024-11-20T01:15:41.670161Z",
- "iopub.status.idle": "2024-11-20T01:15:57.603012Z",
- "shell.execute_reply": "2024-11-20T01:15:57.601075Z"
+ "iopub.execute_input": "2024-11-20T05:35:01.092631Z",
+ "iopub.status.busy": "2024-11-20T05:35:01.091507Z",
+ "iopub.status.idle": "2024-11-20T05:35:14.511795Z",
+ "shell.execute_reply": "2024-11-20T05:35:14.510018Z"
},
"tags": []
},
@@ -47,7 +47,7 @@
"name": "stderr",
"output_type": "stream",
"text": [
- "2024-11-19 20:15:51,462 \u001b[1;37mINFO\u001b[0m cycquery.orm - Database setup, ready to run queries!\n"
+ "2024-11-20 00:35:08,458 \u001b[1;37mINFO\u001b[0m cycquery.orm - Database setup, ready to run queries!\n"
]
},
{
@@ -94,10 +94,10 @@
"id": "c1efa964-8978-4a0e-9892-5ea4ce9953a3",
"metadata": {
"execution": {
- "iopub.execute_input": "2024-11-20T01:15:57.611009Z",
- "iopub.status.busy": "2024-11-20T01:15:57.609596Z",
- "iopub.status.idle": "2024-11-20T01:15:58.025431Z",
- "shell.execute_reply": "2024-11-20T01:15:58.023656Z"
+ "iopub.execute_input": "2024-11-20T05:35:14.519943Z",
+ "iopub.status.busy": "2024-11-20T05:35:14.518392Z",
+ "iopub.status.idle": "2024-11-20T05:35:14.777990Z",
+ "shell.execute_reply": "2024-11-20T05:35:14.776335Z"
},
"tags": []
},
@@ -106,14 +106,14 @@
"name": "stderr",
"output_type": "stream",
"text": [
- "2024-11-19 20:15:58,015 \u001b[1;37mINFO\u001b[0m cycquery.orm - Query returned successfully!\n"
+ "2024-11-20 00:35:14,769 \u001b[1;37mINFO\u001b[0m cycquery.orm - Query returned successfully!\n"
]
},
{
"name": "stderr",
"output_type": "stream",
"text": [
- "2024-11-19 20:15:58,017 \u001b[1;37mINFO\u001b[0m cycquery.utils.profile - Finished executing function run_query in 0.398204 s\n"
+ "2024-11-20 00:35:14,770 \u001b[1;37mINFO\u001b[0m cycquery.utils.profile - Finished executing function run_query in 0.242612 s\n"
]
},
{
@@ -150,10 +150,10 @@
"id": "a7ab5fa3-e26b-47a7-818f-1bf367a55760",
"metadata": {
"execution": {
- "iopub.execute_input": "2024-11-20T01:15:58.032606Z",
- "iopub.status.busy": "2024-11-20T01:15:58.031789Z",
- "iopub.status.idle": "2024-11-20T01:16:02.501511Z",
- "shell.execute_reply": "2024-11-20T01:16:02.499664Z"
+ "iopub.execute_input": "2024-11-20T05:35:14.785536Z",
+ "iopub.status.busy": "2024-11-20T05:35:14.784189Z",
+ "iopub.status.idle": "2024-11-20T05:35:21.010431Z",
+ "shell.execute_reply": "2024-11-20T05:35:21.008766Z"
},
"tags": []
},
@@ -162,14 +162,14 @@
"name": "stderr",
"output_type": "stream",
"text": [
- "2024-11-19 20:16:02,491 \u001b[1;37mINFO\u001b[0m cycquery.orm - Query returned successfully!\n"
+ "2024-11-20 00:35:21,001 \u001b[1;37mINFO\u001b[0m cycquery.orm - Query returned successfully!\n"
]
},
{
"name": "stderr",
"output_type": "stream",
"text": [
- "2024-11-19 20:16:02,493 \u001b[1;37mINFO\u001b[0m cycquery.utils.profile - Finished executing function run_query in 4.424502 s\n"
+ "2024-11-20 00:35:21,003 \u001b[1;37mINFO\u001b[0m cycquery.utils.profile - Finished executing function run_query in 6.181985 s\n"
]
},
{
@@ -211,10 +211,10 @@
"id": "24043abc-1878-4e00-8229-36d4a0368b98",
"metadata": {
"execution": {
- "iopub.execute_input": "2024-11-20T01:16:02.508409Z",
- "iopub.status.busy": "2024-11-20T01:16:02.507802Z",
- "iopub.status.idle": "2024-11-20T01:16:03.114303Z",
- "shell.execute_reply": "2024-11-20T01:16:03.112581Z"
+ "iopub.execute_input": "2024-11-20T05:35:21.017927Z",
+ "iopub.status.busy": "2024-11-20T05:35:21.016604Z",
+ "iopub.status.idle": "2024-11-20T05:35:21.374683Z",
+ "shell.execute_reply": "2024-11-20T05:35:21.372997Z"
},
"tags": []
},
@@ -223,14 +223,14 @@
"name": "stderr",
"output_type": "stream",
"text": [
- "2024-11-19 20:16:03,105 \u001b[1;37mINFO\u001b[0m cycquery.orm - Query returned successfully!\n"
+ "2024-11-20 00:35:21,365 \u001b[1;37mINFO\u001b[0m cycquery.orm - Query returned successfully!\n"
]
},
{
"name": "stderr",
"output_type": "stream",
"text": [
- "2024-11-19 20:16:03,107 \u001b[1;37mINFO\u001b[0m cycquery.utils.profile - Finished executing function run_query in 0.573849 s\n"
+ "2024-11-20 00:35:21,367 \u001b[1;37mINFO\u001b[0m cycquery.utils.profile - Finished executing function run_query in 0.315991 s\n"
]
},
{
@@ -264,10 +264,10 @@
"id": "f6142f27-e8d1-453c-bfe2-2265d9ff1914",
"metadata": {
"execution": {
- "iopub.execute_input": "2024-11-20T01:16:03.122113Z",
- "iopub.status.busy": "2024-11-20T01:16:03.120688Z",
- "iopub.status.idle": "2024-11-20T01:43:56.970615Z",
- "shell.execute_reply": "2024-11-20T01:43:56.968499Z"
+ "iopub.execute_input": "2024-11-20T05:35:21.381952Z",
+ "iopub.status.busy": "2024-11-20T05:35:21.380913Z",
+ "iopub.status.idle": "2024-11-20T06:16:35.263988Z",
+ "shell.execute_reply": "2024-11-20T06:16:35.262075Z"
},
"tags": []
},
@@ -276,14 +276,14 @@
"name": "stderr",
"output_type": "stream",
"text": [
- "2024-11-19 20:43:56,958 \u001b[1;37mINFO\u001b[0m cycquery.orm - Query returned successfully!\n"
+ "2024-11-20 01:16:35,253 \u001b[1;37mINFO\u001b[0m cycquery.orm - Query returned successfully!\n"
]
},
{
"name": "stderr",
"output_type": "stream",
"text": [
- "2024-11-19 20:43:56,961 \u001b[1;37mINFO\u001b[0m cycquery.utils.profile - Finished executing function run_query in 1673.789103 s\n"
+ "2024-11-20 01:16:35,255 \u001b[1;37mINFO\u001b[0m cycquery.utils.profile - Finished executing function run_query in 2473.821842 s\n"
]
},
{
diff --git a/tutorials/mimiciv.html b/tutorials/mimiciv.html
index 09ed9eb..1d568cb 100644
--- a/tutorials/mimiciv.html
+++ b/tutorials/mimiciv.html
@@ -615,7 +615,7 @@ Imports and instantiate
-2024-11-19 20:44:11,546 INFO cycquery.orm - Database setup, ready to run queries!
+2024-11-20 01:16:49,605 INFO cycquery.orm - Database setup, ready to run queries!
@@ -660,7 +660,7 @@ Example 1. Get all patient admissions from 2021 or later (approx year of adm
-2024-11-19 20:44:16,611 INFO cycquery.orm - Query returned successfully!
+2024-11-20 01:16:53,048 INFO cycquery.orm - Query returned successfully!
@@ -668,7 +668,7 @@ Example 1. Get all patient admissions from 2021 or later (approx year of adm
-2024-11-19 20:44:16,613 INFO cycquery.utils.profile - Finished executing function run_query in 2.755651 s
+2024-11-20 01:16:53,050 INFO cycquery.utils.profile - Finished executing function run_query in 1.081479 s
@@ -713,7 +713,7 @@ Example 2. Get all patient encounters with diagnoses (
-2024-11-19 20:44:36,174 INFO cycquery.orm - Query returned successfully!
+2024-11-20 01:16:58,952 INFO cycquery.orm - Query returned successfully!
@@ -721,7 +721,7 @@ Example 2. Get all patient encounters with diagnoses (
-2024-11-19 20:44:36,176 INFO cycquery.utils.profile - Finished executing function run_query in 19.480712 s
+2024-11-20 01:16:58,954 INFO cycquery.utils.profile - Finished executing function run_query in 5.828614 s
@@ -766,7 +766,7 @@ Example 3. Advanced - uses
-2024-11-19 20:44:39,997 INFO cycquery.orm - Query returned successfully!
+2024-11-20 01:17:02,744 INFO cycquery.orm - Query returned successfully!
@@ -774,7 +774,7 @@ Example 3. Advanced - uses
-2024-11-19 20:44:39,998 INFO cycquery.utils.profile - Finished executing function run_query in 3.747865 s
+2024-11-20 01:17:02,746 INFO cycquery.utils.profile - Finished executing function run_query in 3.728091 s
@@ -815,7 +815,7 @@ Example 4. Get routine vital signs for patients from year 2015.
-2024-11-19 20:44:46,350 INFO cycquery.orm - Query returned successfully!
+2024-11-20 01:17:29,794 INFO cycquery.orm - Query returned successfully!
@@ -823,7 +823,7 @@ Example 4. Get routine vital signs for patients from year 2015.
-2024-11-19 20:44:46,352 INFO cycquery.utils.profile - Finished executing function run_query in 6.279347 s
+2024-11-20 01:17:29,796 INFO cycquery.utils.profile - Finished executing function run_query in 26.976392 s
@@ -864,7 +864,7 @@ Example 5. Get hemoglobin lab tests for patients from year 2009.
-2024-11-19 20:44:54,626 INFO cycquery.orm - Query returned successfully!
+2024-11-20 01:17:46,403 INFO cycquery.orm - Query returned successfully!
@@ -872,7 +872,7 @@ Example 5. Get hemoglobin lab tests for patients from year 2009.
-2024-11-19 20:44:54,628 INFO cycquery.utils.profile - Finished executing function run_query in 8.202429 s
+2024-11-20 01:17:46,404 INFO cycquery.utils.profile - Finished executing function run_query in 16.535176 s
@@ -919,7 +919,7 @@ Example 6. Get radiology reports and filter on keywords
-2024-11-19 20:48:55,396 INFO cycquery.orm - Query returned successfully!
+2024-11-20 01:29:13,436 INFO cycquery.orm - Query returned successfully!
@@ -927,7 +927,7 @@ Example 6. Get radiology reports and filter on keywords
-2024-11-19 20:48:55,399 INFO cycquery.utils.profile - Finished executing function run_query in 240.705958 s
+2024-11-20 01:29:13,437 INFO cycquery.utils.profile - Finished executing function run_query in 686.971302 s
@@ -970,7 +970,7 @@ Example 7. Get all female patient encounters from year 2015, and return batc
-2024-11-19 20:48:56,640 INFO cycquery.orm - Query returned successfully!
+2024-11-20 01:29:15,620 INFO cycquery.orm - Query returned successfully!
@@ -978,7 +978,7 @@ Example 7. Get all female patient encounters from year 2015, and return batc
-2024-11-19 20:48:56,642 INFO cycquery.utils.profile - Finished executing function run_query in 1.138438 s
+2024-11-20 01:29:15,622 INFO cycquery.utils.profile - Finished executing function run_query in 2.079561 s
@@ -1006,7 +1006,7 @@ Example 8. Running a raw SQL string.
-2024-11-19 20:48:57,584 INFO cycquery.orm - Query returned successfully!
+2024-11-20 01:29:15,969 INFO cycquery.orm - Query returned successfully!
@@ -1014,7 +1014,7 @@ Example 8. Running a raw SQL string.
-2024-11-19 20:48:57,585 INFO cycquery.utils.profile - Finished executing function run_query in 0.013506 s
+2024-11-20 01:29:15,970 INFO cycquery.utils.profile - Finished executing function run_query in 0.013794 s
diff --git a/tutorials/mimiciv.ipynb b/tutorials/mimiciv.ipynb
index 1bcf55a..f795466 100644
--- a/tutorials/mimiciv.ipynb
+++ b/tutorials/mimiciv.ipynb
@@ -35,10 +35,10 @@
"id": "53009e6b",
"metadata": {
"execution": {
- "iopub.execute_input": "2024-11-20T01:44:03.430243Z",
- "iopub.status.busy": "2024-11-20T01:44:03.429648Z",
- "iopub.status.idle": "2024-11-20T01:44:13.811877Z",
- "shell.execute_reply": "2024-11-20T01:44:13.809967Z"
+ "iopub.execute_input": "2024-11-20T06:16:39.780559Z",
+ "iopub.status.busy": "2024-11-20T06:16:39.779488Z",
+ "iopub.status.idle": "2024-11-20T06:16:51.921944Z",
+ "shell.execute_reply": "2024-11-20T06:16:51.919960Z"
},
"tags": []
},
@@ -47,7 +47,7 @@
"name": "stderr",
"output_type": "stream",
"text": [
- "2024-11-19 20:44:11,546 \u001b[1;37mINFO\u001b[0m cycquery.orm - Database setup, ready to run queries!\n"
+ "2024-11-20 01:16:49,605 \u001b[1;37mINFO\u001b[0m cycquery.orm - Database setup, ready to run queries!\n"
]
},
{
@@ -105,10 +105,10 @@
"id": "cdfadaa4-6fd6-4fd7-85cf-e012aa0799e1",
"metadata": {
"execution": {
- "iopub.execute_input": "2024-11-20T01:44:13.819661Z",
- "iopub.status.busy": "2024-11-20T01:44:13.818343Z",
- "iopub.status.idle": "2024-11-20T01:44:16.620652Z",
- "shell.execute_reply": "2024-11-20T01:44:16.618971Z"
+ "iopub.execute_input": "2024-11-20T06:16:51.930673Z",
+ "iopub.status.busy": "2024-11-20T06:16:51.929294Z",
+ "iopub.status.idle": "2024-11-20T06:16:53.057370Z",
+ "shell.execute_reply": "2024-11-20T06:16:53.055697Z"
}
},
"outputs": [
@@ -116,14 +116,14 @@
"name": "stderr",
"output_type": "stream",
"text": [
- "2024-11-19 20:44:16,611 \u001b[1;37mINFO\u001b[0m cycquery.orm - Query returned successfully!\n"
+ "2024-11-20 01:16:53,048 \u001b[1;37mINFO\u001b[0m cycquery.orm - Query returned successfully!\n"
]
},
{
"name": "stderr",
"output_type": "stream",
"text": [
- "2024-11-19 20:44:16,613 \u001b[1;37mINFO\u001b[0m cycquery.utils.profile - Finished executing function run_query in 2.755651 s\n"
+ "2024-11-20 01:16:53,050 \u001b[1;37mINFO\u001b[0m cycquery.utils.profile - Finished executing function run_query in 1.081479 s\n"
]
},
{
@@ -160,10 +160,10 @@
"id": "a89a9cf0",
"metadata": {
"execution": {
- "iopub.execute_input": "2024-11-20T01:44:16.628325Z",
- "iopub.status.busy": "2024-11-20T01:44:16.627334Z",
- "iopub.status.idle": "2024-11-20T01:44:36.183696Z",
- "shell.execute_reply": "2024-11-20T01:44:36.182018Z"
+ "iopub.execute_input": "2024-11-20T06:16:53.064897Z",
+ "iopub.status.busy": "2024-11-20T06:16:53.063497Z",
+ "iopub.status.idle": "2024-11-20T06:16:58.961704Z",
+ "shell.execute_reply": "2024-11-20T06:16:58.960047Z"
}
},
"outputs": [
@@ -171,14 +171,14 @@
"name": "stderr",
"output_type": "stream",
"text": [
- "2024-11-19 20:44:36,174 \u001b[1;37mINFO\u001b[0m cycquery.orm - Query returned successfully!\n"
+ "2024-11-20 01:16:58,952 \u001b[1;37mINFO\u001b[0m cycquery.orm - Query returned successfully!\n"
]
},
{
"name": "stderr",
"output_type": "stream",
"text": [
- "2024-11-19 20:44:36,176 \u001b[1;37mINFO\u001b[0m cycquery.utils.profile - Finished executing function run_query in 19.480712 s\n"
+ "2024-11-20 01:16:58,954 \u001b[1;37mINFO\u001b[0m cycquery.utils.profile - Finished executing function run_query in 5.828614 s\n"
]
},
{
@@ -225,10 +225,10 @@
"id": "03936cee",
"metadata": {
"execution": {
- "iopub.execute_input": "2024-11-20T01:44:36.190918Z",
- "iopub.status.busy": "2024-11-20T01:44:36.190170Z",
- "iopub.status.idle": "2024-11-20T01:44:40.006462Z",
- "shell.execute_reply": "2024-11-20T01:44:40.004729Z"
+ "iopub.execute_input": "2024-11-20T06:16:58.969198Z",
+ "iopub.status.busy": "2024-11-20T06:16:58.967883Z",
+ "iopub.status.idle": "2024-11-20T06:17:02.753799Z",
+ "shell.execute_reply": "2024-11-20T06:17:02.752103Z"
}
},
"outputs": [
@@ -236,14 +236,14 @@
"name": "stderr",
"output_type": "stream",
"text": [
- "2024-11-19 20:44:39,997 \u001b[1;37mINFO\u001b[0m cycquery.orm - Query returned successfully!\n"
+ "2024-11-20 01:17:02,744 \u001b[1;37mINFO\u001b[0m cycquery.orm - Query returned successfully!\n"
]
},
{
"name": "stderr",
"output_type": "stream",
"text": [
- "2024-11-19 20:44:39,998 \u001b[1;37mINFO\u001b[0m cycquery.utils.profile - Finished executing function run_query in 3.747865 s\n"
+ "2024-11-20 01:17:02,746 \u001b[1;37mINFO\u001b[0m cycquery.utils.profile - Finished executing function run_query in 3.728091 s\n"
]
},
{
@@ -290,10 +290,10 @@
"id": "56a72377",
"metadata": {
"execution": {
- "iopub.execute_input": "2024-11-20T01:44:40.013782Z",
- "iopub.status.busy": "2024-11-20T01:44:40.012753Z",
- "iopub.status.idle": "2024-11-20T01:44:46.359667Z",
- "shell.execute_reply": "2024-11-20T01:44:46.357949Z"
+ "iopub.execute_input": "2024-11-20T06:17:02.761313Z",
+ "iopub.status.busy": "2024-11-20T06:17:02.759935Z",
+ "iopub.status.idle": "2024-11-20T06:17:29.803980Z",
+ "shell.execute_reply": "2024-11-20T06:17:29.802281Z"
}
},
"outputs": [
@@ -301,14 +301,14 @@
"name": "stderr",
"output_type": "stream",
"text": [
- "2024-11-19 20:44:46,350 \u001b[1;37mINFO\u001b[0m cycquery.orm - Query returned successfully!\n"
+ "2024-11-20 01:17:29,794 \u001b[1;37mINFO\u001b[0m cycquery.orm - Query returned successfully!\n"
]
},
{
"name": "stderr",
"output_type": "stream",
"text": [
- "2024-11-19 20:44:46,352 \u001b[1;37mINFO\u001b[0m cycquery.utils.profile - Finished executing function run_query in 6.279347 s\n"
+ "2024-11-20 01:17:29,796 \u001b[1;37mINFO\u001b[0m cycquery.utils.profile - Finished executing function run_query in 26.976392 s\n"
]
},
{
@@ -351,10 +351,10 @@
"id": "bce11f81",
"metadata": {
"execution": {
- "iopub.execute_input": "2024-11-20T01:44:46.367179Z",
- "iopub.status.busy": "2024-11-20T01:44:46.365898Z",
- "iopub.status.idle": "2024-11-20T01:44:54.636391Z",
- "shell.execute_reply": "2024-11-20T01:44:54.634450Z"
+ "iopub.execute_input": "2024-11-20T06:17:29.811063Z",
+ "iopub.status.busy": "2024-11-20T06:17:29.810242Z",
+ "iopub.status.idle": "2024-11-20T06:17:46.412104Z",
+ "shell.execute_reply": "2024-11-20T06:17:46.410451Z"
}
},
"outputs": [
@@ -362,14 +362,14 @@
"name": "stderr",
"output_type": "stream",
"text": [
- "2024-11-19 20:44:54,626 \u001b[1;37mINFO\u001b[0m cycquery.orm - Query returned successfully!\n"
+ "2024-11-20 01:17:46,403 \u001b[1;37mINFO\u001b[0m cycquery.orm - Query returned successfully!\n"
]
},
{
"name": "stderr",
"output_type": "stream",
"text": [
- "2024-11-19 20:44:54,628 \u001b[1;37mINFO\u001b[0m cycquery.utils.profile - Finished executing function run_query in 8.202429 s\n"
+ "2024-11-20 01:17:46,404 \u001b[1;37mINFO\u001b[0m cycquery.utils.profile - Finished executing function run_query in 16.535176 s\n"
]
},
{
@@ -412,10 +412,10 @@
"id": "f00d270c-d78f-4dc0-8dae-ff4d52958c8b",
"metadata": {
"execution": {
- "iopub.execute_input": "2024-11-20T01:44:54.643597Z",
- "iopub.status.busy": "2024-11-20T01:44:54.642686Z",
- "iopub.status.idle": "2024-11-20T01:48:55.407457Z",
- "shell.execute_reply": "2024-11-20T01:48:55.405470Z"
+ "iopub.execute_input": "2024-11-20T06:17:46.419627Z",
+ "iopub.status.busy": "2024-11-20T06:17:46.418382Z",
+ "iopub.status.idle": "2024-11-20T06:29:13.445449Z",
+ "shell.execute_reply": "2024-11-20T06:29:13.443752Z"
},
"tags": []
},
@@ -424,14 +424,14 @@
"name": "stderr",
"output_type": "stream",
"text": [
- "2024-11-19 20:48:55,396 \u001b[1;37mINFO\u001b[0m cycquery.orm - Query returned successfully!\n"
+ "2024-11-20 01:29:13,436 \u001b[1;37mINFO\u001b[0m cycquery.orm - Query returned successfully!\n"
]
},
{
"name": "stderr",
"output_type": "stream",
"text": [
- "2024-11-19 20:48:55,399 \u001b[1;37mINFO\u001b[0m cycquery.utils.profile - Finished executing function run_query in 240.705958 s\n"
+ "2024-11-20 01:29:13,437 \u001b[1;37mINFO\u001b[0m cycquery.utils.profile - Finished executing function run_query in 686.971302 s\n"
]
},
{
@@ -480,10 +480,10 @@
"id": "28683d70-376e-4d9b-883d-1a7de634e455",
"metadata": {
"execution": {
- "iopub.execute_input": "2024-11-20T01:48:55.414942Z",
- "iopub.status.busy": "2024-11-20T01:48:55.413970Z",
- "iopub.status.idle": "2024-11-20T01:48:57.561732Z",
- "shell.execute_reply": "2024-11-20T01:48:57.559774Z"
+ "iopub.execute_input": "2024-11-20T06:29:13.452345Z",
+ "iopub.status.busy": "2024-11-20T06:29:13.451739Z",
+ "iopub.status.idle": "2024-11-20T06:29:15.946200Z",
+ "shell.execute_reply": "2024-11-20T06:29:15.944242Z"
}
},
"outputs": [
@@ -491,14 +491,14 @@
"name": "stderr",
"output_type": "stream",
"text": [
- "2024-11-19 20:48:56,640 \u001b[1;37mINFO\u001b[0m cycquery.orm - Query returned successfully!\n"
+ "2024-11-20 01:29:15,620 \u001b[1;37mINFO\u001b[0m cycquery.orm - Query returned successfully!\n"
]
},
{
"name": "stderr",
"output_type": "stream",
"text": [
- "2024-11-19 20:48:56,642 \u001b[1;37mINFO\u001b[0m cycquery.utils.profile - Finished executing function run_query in 1.138438 s\n"
+ "2024-11-20 01:29:15,622 \u001b[1;37mINFO\u001b[0m cycquery.utils.profile - Finished executing function run_query in 2.079561 s\n"
]
},
{
@@ -543,10 +543,10 @@
"id": "a853deec",
"metadata": {
"execution": {
- "iopub.execute_input": "2024-11-20T01:48:57.569821Z",
- "iopub.status.busy": "2024-11-20T01:48:57.568211Z",
- "iopub.status.idle": "2024-11-20T01:48:57.593104Z",
- "shell.execute_reply": "2024-11-20T01:48:57.591306Z"
+ "iopub.execute_input": "2024-11-20T06:29:15.954288Z",
+ "iopub.status.busy": "2024-11-20T06:29:15.952825Z",
+ "iopub.status.idle": "2024-11-20T06:29:15.977306Z",
+ "shell.execute_reply": "2024-11-20T06:29:15.975692Z"
},
"tags": []
},
@@ -555,14 +555,14 @@
"name": "stderr",
"output_type": "stream",
"text": [
- "2024-11-19 20:48:57,584 \u001b[1;37mINFO\u001b[0m cycquery.orm - Query returned successfully!\n"
+ "2024-11-20 01:29:15,969 \u001b[1;37mINFO\u001b[0m cycquery.orm - Query returned successfully!\n"
]
},
{
"name": "stderr",
"output_type": "stream",
"text": [
- "2024-11-19 20:48:57,585 \u001b[1;37mINFO\u001b[0m cycquery.utils.profile - Finished executing function run_query in 0.013506 s\n"
+ "2024-11-20 01:29:15,970 \u001b[1;37mINFO\u001b[0m cycquery.utils.profile - Finished executing function run_query in 0.013794 s\n"
]
},
{
diff --git a/tutorials/omop.html b/tutorials/omop.html
index 1ce789b..7a67cce 100644
--- a/tutorials/omop.html
+++ b/tutorials/omop.html
@@ -623,7 +623,7 @@ Imports and instantiate
-2024-11-19 20:49:08,870 INFO cycquery.orm - Database setup, ready to run queries!
+2024-11-20 01:29:23,963 INFO cycquery.orm - Database setup, ready to run queries!
@@ -698,7 +698,7 @@ Example 1. Get all patient visits in or after 2010.
-2024-11-19 20:49:10,908 INFO cycquery.orm - Query returned successfully!
+2024-11-20 01:29:34,355 INFO cycquery.orm - Query returned successfully!
@@ -706,7 +706,7 @@ Example 1. Get all patient visits in or after 2010.
-2024-11-19 20:49:10,910 INFO cycquery.utils.profile - Finished executing function run_query in 0.795905 s
+2024-11-20 01:29:34,357 INFO cycquery.utils.profile - Finished executing function run_query in 9.074612 s
@@ -764,7 +764,7 @@ Example 2. Get measurements for all visits in or after 2020.
-2024-11-19 20:49:12,789 INFO cycquery.orm - Query returned successfully!
+2024-11-20 01:29:48,668 INFO cycquery.orm - Query returned successfully!
@@ -772,7 +772,7 @@ Example 2. Get measurements for all visits in or after 2020.
-2024-11-19 20:49:12,791 INFO cycquery.utils.profile - Finished executing function run_query in 1.406459 s
+2024-11-20 01:29:48,670 INFO cycquery.utils.profile - Finished executing function run_query in 13.814946 s
@@ -818,7 +818,7 @@ Imports and instantiate
-2024-11-19 20:49:20,666 INFO cycquery.orm - Database setup, ready to run queries!
+2024-11-20 01:30:04,610 INFO cycquery.orm - Database setup, ready to run queries!
@@ -858,7 +858,7 @@ Example 1. Get all patient visits that ended in a mortality outcome in or af
-2024-11-19 20:49:29,834 INFO cycquery.orm - Query returned successfully!
+2024-11-20 01:30:13,492 INFO cycquery.orm - Query returned successfully!
@@ -866,7 +866,7 @@ Example 1. Get all patient visits that ended in a mortality outcome in or af
-2024-11-19 20:49:29,836 INFO cycquery.utils.profile - Finished executing function run_query in 3.045029 s
+2024-11-20 01:30:13,494 INFO cycquery.utils.profile - Finished executing function run_query in 2.426398 s
@@ -922,7 +922,7 @@ Example 2. Get all measurements for female patient visits with
-2024-11-19 20:56:57,721 INFO cycquery.orm - Query returned successfully!
+2024-11-20 01:51:06,179 INFO cycquery.orm - Query returned successfully!
@@ -930,7 +930,7 @@ Example 2. Get all measurements for female patient visits with
-2024-11-19 20:56:57,723 INFO cycquery.utils.profile - Finished executing function run_query in 447.638358 s
+2024-11-20 01:51:06,181 INFO cycquery.utils.profile - Finished executing function run_query in 1252.407178 s
@@ -956,7 +956,28 @@ Example 2. Get all measurements for female patient visits with
measurement_concept_name
-No matching concept 100
+Respiratory rate 52
+No matching concept 21
+Glasgow coma score motor 8
+Imipenem [Susceptibility] by Disk diffusion (KB) 1
+Trimethoprim+Sulfamethoxazole [Susceptibility] by Disk diffusion (KB) 1
+Nitrofurantoin [Susceptibility] by Disk diffusion (KB) 1
+Ciprofloxacin [Susceptibility] by Disk diffusion (KB) 1
+cefTRIAXone [Susceptibility] by Disk diffusion (KB) 1
+cefTAZidime [Susceptibility] by Disk diffusion (KB) 1
+levoFLOXacin [Susceptibility] by Disk diffusion (KB) 1
+Tobramycin [Susceptibility] by Disk diffusion (KB) 1
+Gentamicin [Susceptibility] by Disk diffusion (KB) 1
+Cefepime [Susceptibility] by Disk diffusion (KB) 1
+Piperacillin+Tazobactam [Susceptibility] by Disk diffusion (KB) 1
+Ampicillin [Susceptibility] by Disk diffusion (KB) 1
+Meropenem [Susceptibility] by Disk diffusion (KB) 1
+Cefuroxime Parenteral [Susceptibility] by Disk diffusion (KB) 1
+ceFAZolin [Susceptibility] by Disk diffusion (KB) 1
+Ampicillin+Sulbactam [Susceptibility] by Disk diffusion (KB) 1
+Piperacillin [Susceptibility] by Disk diffusion (KB) 1
+Bacteria identified in Blood product unit.autologous by Culture 1
+Bacteria identified in Urine by Culture 1
Name: count, dtype: int64[pyarrow]
diff --git a/tutorials/omop.ipynb b/tutorials/omop.ipynb
index 03438e9..bde0105 100644
--- a/tutorials/omop.ipynb
+++ b/tutorials/omop.ipynb
@@ -45,10 +45,10 @@
"id": "53009e6b",
"metadata": {
"execution": {
- "iopub.execute_input": "2024-11-20T01:49:02.885794Z",
- "iopub.status.busy": "2024-11-20T01:49:02.884849Z",
- "iopub.status.idle": "2024-11-20T01:49:10.066104Z",
- "shell.execute_reply": "2024-11-20T01:49:10.064403Z"
+ "iopub.execute_input": "2024-11-20T06:29:21.198144Z",
+ "iopub.status.busy": "2024-11-20T06:29:21.197128Z",
+ "iopub.status.idle": "2024-11-20T06:29:25.230191Z",
+ "shell.execute_reply": "2024-11-20T06:29:25.228443Z"
}
},
"outputs": [
@@ -56,7 +56,7 @@
"name": "stderr",
"output_type": "stream",
"text": [
- "2024-11-19 20:49:08,870 \u001b[1;37mINFO\u001b[0m cycquery.orm - Database setup, ready to run queries!\n"
+ "2024-11-20 01:29:23,963 \u001b[1;37mINFO\u001b[0m cycquery.orm - Database setup, ready to run queries!\n"
]
},
{
@@ -151,10 +151,10 @@
"id": "3a3d9cb9-fe40-45b8-ba2f-8de52a3b7f4f",
"metadata": {
"execution": {
- "iopub.execute_input": "2024-11-20T01:49:10.073508Z",
- "iopub.status.busy": "2024-11-20T01:49:10.072318Z",
- "iopub.status.idle": "2024-11-20T01:49:11.278570Z",
- "shell.execute_reply": "2024-11-20T01:49:11.276688Z"
+ "iopub.execute_input": "2024-11-20T06:29:25.238214Z",
+ "iopub.status.busy": "2024-11-20T06:29:25.236863Z",
+ "iopub.status.idle": "2024-11-20T06:29:34.741931Z",
+ "shell.execute_reply": "2024-11-20T06:29:34.739998Z"
}
},
"outputs": [
@@ -162,14 +162,14 @@
"name": "stderr",
"output_type": "stream",
"text": [
- "2024-11-19 20:49:10,908 \u001b[1;37mINFO\u001b[0m cycquery.orm - Query returned successfully!\n"
+ "2024-11-20 01:29:34,355 \u001b[1;37mINFO\u001b[0m cycquery.orm - Query returned successfully!\n"
]
},
{
"name": "stderr",
"output_type": "stream",
"text": [
- "2024-11-19 20:49:10,910 \u001b[1;37mINFO\u001b[0m cycquery.utils.profile - Finished executing function run_query in 0.795905 s\n"
+ "2024-11-20 01:29:34,357 \u001b[1;37mINFO\u001b[0m cycquery.utils.profile - Finished executing function run_query in 9.074612 s\n"
]
},
{
@@ -227,10 +227,10 @@
"id": "030e2491-a7cc-42f3-a1ca-618212b3524c",
"metadata": {
"execution": {
- "iopub.execute_input": "2024-11-20T01:49:11.286419Z",
- "iopub.status.busy": "2024-11-20T01:49:11.284843Z",
- "iopub.status.idle": "2024-11-20T01:49:12.799111Z",
- "shell.execute_reply": "2024-11-20T01:49:12.797306Z"
+ "iopub.execute_input": "2024-11-20T06:29:34.749622Z",
+ "iopub.status.busy": "2024-11-20T06:29:34.748184Z",
+ "iopub.status.idle": "2024-11-20T06:29:48.677655Z",
+ "shell.execute_reply": "2024-11-20T06:29:48.675806Z"
}
},
"outputs": [
@@ -238,14 +238,14 @@
"name": "stderr",
"output_type": "stream",
"text": [
- "2024-11-19 20:49:12,789 \u001b[1;37mINFO\u001b[0m cycquery.orm - Query returned successfully!\n"
+ "2024-11-20 01:29:48,668 \u001b[1;37mINFO\u001b[0m cycquery.orm - Query returned successfully!\n"
]
},
{
"name": "stderr",
"output_type": "stream",
"text": [
- "2024-11-19 20:49:12,791 \u001b[1;37mINFO\u001b[0m cycquery.utils.profile - Finished executing function run_query in 1.406459 s\n"
+ "2024-11-20 01:29:48,670 \u001b[1;37mINFO\u001b[0m cycquery.utils.profile - Finished executing function run_query in 13.814946 s\n"
]
},
{
@@ -303,10 +303,10 @@
"id": "0622b3df-2864-4f32-bd98-806019f59c50",
"metadata": {
"execution": {
- "iopub.execute_input": "2024-11-20T01:49:12.806682Z",
- "iopub.status.busy": "2024-11-20T01:49:12.805611Z",
- "iopub.status.idle": "2024-11-20T01:49:26.721948Z",
- "shell.execute_reply": "2024-11-20T01:49:26.720095Z"
+ "iopub.execute_input": "2024-11-20T06:29:48.685590Z",
+ "iopub.status.busy": "2024-11-20T06:29:48.684467Z",
+ "iopub.status.idle": "2024-11-20T06:30:10.988859Z",
+ "shell.execute_reply": "2024-11-20T06:30:10.987074Z"
},
"tags": []
},
@@ -315,7 +315,7 @@
"name": "stderr",
"output_type": "stream",
"text": [
- "2024-11-19 20:49:20,666 \u001b[1;37mINFO\u001b[0m cycquery.orm - Database setup, ready to run queries!\n"
+ "2024-11-20 01:30:04,610 \u001b[1;37mINFO\u001b[0m cycquery.orm - Database setup, ready to run queries!\n"
]
},
{
@@ -357,10 +357,10 @@
"id": "40ff2e83-75e4-4119-aa33-26f95e63ddaa",
"metadata": {
"execution": {
- "iopub.execute_input": "2024-11-20T01:49:26.729377Z",
- "iopub.status.busy": "2024-11-20T01:49:26.728275Z",
- "iopub.status.idle": "2024-11-20T01:49:29.844169Z",
- "shell.execute_reply": "2024-11-20T01:49:29.842320Z"
+ "iopub.execute_input": "2024-11-20T06:30:10.996879Z",
+ "iopub.status.busy": "2024-11-20T06:30:10.995242Z",
+ "iopub.status.idle": "2024-11-20T06:30:13.502221Z",
+ "shell.execute_reply": "2024-11-20T06:30:13.500269Z"
},
"tags": []
},
@@ -369,14 +369,14 @@
"name": "stderr",
"output_type": "stream",
"text": [
- "2024-11-19 20:49:29,834 \u001b[1;37mINFO\u001b[0m cycquery.orm - Query returned successfully!\n"
+ "2024-11-20 01:30:13,492 \u001b[1;37mINFO\u001b[0m cycquery.orm - Query returned successfully!\n"
]
},
{
"name": "stderr",
"output_type": "stream",
"text": [
- "2024-11-19 20:49:29,836 \u001b[1;37mINFO\u001b[0m cycquery.utils.profile - Finished executing function run_query in 3.045029 s\n"
+ "2024-11-20 01:30:13,494 \u001b[1;37mINFO\u001b[0m cycquery.utils.profile - Finished executing function run_query in 2.426398 s\n"
]
},
{
@@ -419,10 +419,10 @@
"id": "46fd771c-5da7-4bce-aec7-08a5210a069b",
"metadata": {
"execution": {
- "iopub.execute_input": "2024-11-20T01:49:29.851669Z",
- "iopub.status.busy": "2024-11-20T01:49:29.850562Z",
- "iopub.status.idle": "2024-11-20T01:56:57.730755Z",
- "shell.execute_reply": "2024-11-20T01:56:57.729042Z"
+ "iopub.execute_input": "2024-11-20T06:30:13.513723Z",
+ "iopub.status.busy": "2024-11-20T06:30:13.511104Z",
+ "iopub.status.idle": "2024-11-20T06:51:06.189191Z",
+ "shell.execute_reply": "2024-11-20T06:51:06.187456Z"
},
"tags": []
},
@@ -431,14 +431,14 @@
"name": "stderr",
"output_type": "stream",
"text": [
- "2024-11-19 20:56:57,721 \u001b[1;37mINFO\u001b[0m cycquery.orm - Query returned successfully!\n"
+ "2024-11-20 01:51:06,179 \u001b[1;37mINFO\u001b[0m cycquery.orm - Query returned successfully!\n"
]
},
{
"name": "stderr",
"output_type": "stream",
"text": [
- "2024-11-19 20:56:57,723 \u001b[1;37mINFO\u001b[0m cycquery.utils.profile - Finished executing function run_query in 447.638358 s\n"
+ "2024-11-20 01:51:06,181 \u001b[1;37mINFO\u001b[0m cycquery.utils.profile - Finished executing function run_query in 1252.407178 s\n"
]
},
{
@@ -488,10 +488,10 @@
"id": "d20a2581-f613-4ab8-9feb-3e84b8835db1",
"metadata": {
"execution": {
- "iopub.execute_input": "2024-11-20T01:56:57.737981Z",
- "iopub.status.busy": "2024-11-20T01:56:57.736780Z",
- "iopub.status.idle": "2024-11-20T01:56:58.259761Z",
- "shell.execute_reply": "2024-11-20T01:56:58.257997Z"
+ "iopub.execute_input": "2024-11-20T06:51:06.196661Z",
+ "iopub.status.busy": "2024-11-20T06:51:06.195288Z",
+ "iopub.status.idle": "2024-11-20T06:51:06.213014Z",
+ "shell.execute_reply": "2024-11-20T06:51:06.211151Z"
},
"tags": []
},
@@ -500,7 +500,28 @@
"data": {
"text/plain": [
"measurement_concept_name\n",
- "No matching concept 100\n",
+ "Respiratory rate 52\n",
+ "No matching concept 21\n",
+ "Glasgow coma score motor 8\n",
+ "Imipenem [Susceptibility] by Disk diffusion (KB) 1\n",
+ "Trimethoprim+Sulfamethoxazole [Susceptibility] by Disk diffusion (KB) 1\n",
+ "Nitrofurantoin [Susceptibility] by Disk diffusion (KB) 1\n",
+ "Ciprofloxacin [Susceptibility] by Disk diffusion (KB) 1\n",
+ "cefTRIAXone [Susceptibility] by Disk diffusion (KB) 1\n",
+ "cefTAZidime [Susceptibility] by Disk diffusion (KB) 1\n",
+ "levoFLOXacin [Susceptibility] by Disk diffusion (KB) 1\n",
+ "Tobramycin [Susceptibility] by Disk diffusion (KB) 1\n",
+ "Gentamicin [Susceptibility] by Disk diffusion (KB) 1\n",
+ "Cefepime [Susceptibility] by Disk diffusion (KB) 1\n",
+ "Piperacillin+Tazobactam [Susceptibility] by Disk diffusion (KB) 1\n",
+ "Ampicillin [Susceptibility] by Disk diffusion (KB) 1\n",
+ "Meropenem [Susceptibility] by Disk diffusion (KB) 1\n",
+ "Cefuroxime Parenteral [Susceptibility] by Disk diffusion (KB) 1\n",
+ "ceFAZolin [Susceptibility] by Disk diffusion (KB) 1\n",
+ "Ampicillin+Sulbactam [Susceptibility] by Disk diffusion (KB) 1\n",
+ "Piperacillin [Susceptibility] by Disk diffusion (KB) 1\n",
+ "Bacteria identified in Blood product unit.autologous by Culture 1\n",
+ "Bacteria identified in Urine by Culture 1\n",
"Name: count, dtype: int64[pyarrow]"
]
},