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varioml_validation_report_1.html
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varioml_validation_report_1.html
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<!DOCTYPE html PUBLIC "-//W3C//DTD HTML 4.01 Transitional//EN" "http://www.w3.org/TR/html4/loose.dtd">
<!-- saved from url=(0109)http://val.varioml.org/val?url=https://svn.gene.le.ac.uk/gen2phen/trunk/data_formats/xml/airebase_example.xml -->
<html xmlns:svrl="http://purl.oclc.org/dsdl/svrl" xmlns:dc="http://purl.org/dc/elements/1.1/"><head><meta http-equiv="Content-Type" content="text/html; charset=UTF-8">
<link href="./varioml_validation_report_1_files/val_rpt.css" type="text/css" rel="stylesheet">
<style media="screen" type="text/css">@import "https://svn.gene.le.ac.uk/gen2phen/trunk/data_formats/xml/val_rpt.css";</style>
<title>VarioML Schema Validation Report</title>
</head>
<body>
<h2>VarioML Schema Validation Report</h2>
<ul id="val_rpt">
<ol>
<svrl:schematron-output xmlns:vml="http://gen2phen.org/varioml/2.0" xmlns:iso="http://purl.oclc.org/dsdl/schematron" xmlns:sch="http://www.ascc.net/xml/schematron" xmlns:schold="http://www.ascc.net/xml/schematron" xmlns:xs="http://www.w3.org/2001/XMLSchema">
<strong>
<li>vml:lsdb</li>
</strong>
<svrl:fired-rule>
<ol>
<li class="success">
Top-level Source element is present.
</li>
<li class="success">
One or more Individual elements are present.
</li>
</ol>
</svrl:fired-rule>
<strong>
<li>vml:individual</li>
</strong>
<svrl:fired-rule>
<ol>
<li class="success">Individual id:A0176</li>
</ol>
</svrl:fired-rule>
<strong>
<li>vml:variant</li>
</strong>
<svrl:fired-rule>
<ol>
<li class="success">Variant id:1</li>
<li class="success"> Variant 1 is a child of individual id A0176</li>
<li class="success">Source attribute for Variant:Gene, child of individual with id A0176, is present</li>
<li class="success">
Seq_Changes element is present as child of individual with id A0176</li>
<li class="failure">Variant:Gene contains a gene name. Make sure this is a valid gene name (e.g. AGA). HGNC names (symbols) should be used to name genes.</li>
<li class="failure">Ref_Seq, child of gene individual with accession , is missing Source attribute
</li>
</ol>
</svrl:fired-rule>
<strong>
<li>vml:variant</li>
</strong>
<svrl:fired-rule>
<ol>
<li class="success">Variant id:1.2</li>
<li class="success"> Variant 1.2 is a child of seq_changes id </li>
<li class="success">
Seq_Changes element is present as child of seq_changes with id </li>
<li class="failure">Gene with accession , does not belong as child of seq_changes id . Genes may only be listed under top-level DNA or cDNA variants.</li>
<li class="failure">Variant:Gene, child of seq_changes, is missing Source attribute</li>
<li class="failure">Variant:Gene is missing Accession attribute</li>
<li class="failure">Ref_Seq, child of gene seq_changes with accession , is missing Source attribute
</li>
</ol>
</svrl:fired-rule>
<strong>
<li>vml:variant</li>
</strong>
<svrl:fired-rule>
<ol>
<li class="success">Variant id:1.3</li>
<li class="success"> Variant 1.3 is a child of seq_changes id </li>
<li class="failure">Gene with accession , does not belong as child of seq_changes id . Genes may only be listed under top-level DNA or cDNA variants.</li>
<li class="failure">Variant:Gene, child of seq_changes, is missing Source attribute</li>
<li class="failure">Variant:Gene is missing Accession attribute</li>
</ol>
</svrl:fired-rule>
<strong>
<li>vml:variant</li>
</strong>
<svrl:fired-rule>
<ol>
<li class="success">Variant id:2</li>
<li class="success"> Variant 2 is a child of individual id A0176</li>
<li class="success">Source attribute for Variant:Gene, child of individual with id A0176, is present</li>
<li class="success">
Seq_Changes element is present as child of individual with id A0176</li>
<li class="failure">Variant:Gene contains a gene name. Make sure this is a valid gene name (e.g. AGA). HGNC names (symbols) should be used to name genes.</li>
<li class="failure">Ref_Seq, child of gene individual with accession , is missing Source attribute
</li>
</ol>
</svrl:fired-rule>
<strong>
<li>vml:variant</li>
</strong>
<svrl:fired-rule>
<ol>
<li class="success">Variant id:2.1</li>
<li class="success"> Variant 2.1 is a child of seq_changes id </li>
<li class="success">
Seq_Changes element is present as child of seq_changes with id </li>
<li class="failure">Gene with accession , does not belong as child of seq_changes id . Genes may only be listed under top-level DNA or cDNA variants.</li>
<li class="failure">Variant:Gene, child of seq_changes, is missing Source attribute</li>
<li class="failure">Variant:Gene is missing Accession attribute</li>
<li class="failure">Ref_Seq, child of gene seq_changes with accession , is missing Source attribute
</li>
</ol>
</svrl:fired-rule>
<strong>
<li>vml:variant</li>
</strong>
<svrl:fired-rule>
<ol>
<li class="success">Variant id:2.2</li>
<li class="success"> Variant 2.2 is a child of seq_changes id </li>
<li class="failure">Gene with accession , does not belong as child of seq_changes id . Genes may only be listed under top-level DNA or cDNA variants.</li>
<li class="failure">Variant:Gene, child of seq_changes, is missing Source attribute</li>
<li class="failure">Variant:Gene is missing Accession attribute</li>
</ol>
</svrl:fired-rule>
</svrl:schematron-output>
</ol>
</ul>
</body></html>