README.md

http://xahlee.info/js/html5_non-closing_tag.html

NDC PubMed Mesh ICD biomarker

Graphs

• Tinkerpop, Gremlin, Titan, Neo4J, Neptune, GraphDB, Badwolf, SPARQL, Jena

Focus

• DATA ---> Health ---> Open Health Data ---> India

  • HMIS (in-progress)
    • PUBLISHEDREPORTS - PERFORMANCE OF KEY HMIS INDICATORS(UPTO DISTRICT LEVEL)
  • data.gov.in (in-progress)
    • APIs
  • https://github.com/opentrials/registers
    • clinicaltrials.gov
    • http://ctri.nic.in/Clinicaltrials/advancesearchmain.php - https://www.ncbi.nlm.nih.gov/pmc/articles/PMC3667290/
    • https://github.com/CrossRef/clinical-trials-importer/blob/develop/resources/clinical-trial-registries.edn
  • Mesh
  • opentrials.net
  • https://www.healthdata.gov/search/type/dataset
  • https://www.cms.gov/Medicare/Coding/ICD10/2018-ICD-10-CM-and-GEMs.html
  • https://www.nlm.nih.gov/research/umls/licensedcontent/umlsknowledgesources.html

  Autocomplete and autoselection for defaults and list sizes ex: 10 for trials and 5 for papers based on citation

Artifacts

• Searcable Navigable data --> SPA
• CTRI scraper and postgres db dump along with a postgres RDS snapshot containing both clinicaltrials.gov, ctri and possibly other trial registries
• Interesting insights --> Articles (Freakonomics) ex:
  • Skew in Tubectomy vs Vasectomy and its social inferences
  • Crime statistics vs population esp. choice in birth, abortion
• Focused actions --> APP ex:

  • based on blood bank data build a geo-location aware app to find closest/best-match blood bank.

      Platform for real time monitoring of blood bank capacity (falls into a category EHR, HMS)
      B+,1200L
      A+,2000L
      AB-,10L
    

• Analytical reports --> Papers (ex: https://timesofindia.indiatimes.com/india/fertility-rate-below-replacement-level-for-all-but-hindus-muslims/articleshow/62465588.cms)

  • Conditions and metrics related to each ex: Anaemia

      Year, District, Anemia metrics1, Anemia metrics2,
      % Pregnant women having severe anaemia (Hb<7) treated at institution to women having hb level<11
    

  • Services and their reach (keywords are registration, received) ex: JSY, number of Pregnant women received TT2 or Booster

  • Data outliers (anomalies) ex: Aizwal 2009-10 no data for most of the metrics

Ideas

• aact inspired project for data.gov.in to use RSS Feeds from data.gov.in and use it to generate jsons (and postgreSQL database?)
• aact inspired project for ctri.nic.in and use it to generate jsons (and postgreSQL database?)
• OCR and CV based mobile app on BYOD for tabulating blood bank repositories
  • Incentive for hospitals - free, easy access through apps, analytics
• Ontology for data.gov.in

Key Terms

RDF, SPARQL,JSON-LD,Linked Data, Semantic web

Reference Projects, Tools and Articles

• https://github.com/HHS/meshrdf
• https://github.com/EBISPOT/lodestar
• https://github.com/openlink/virtuoso-opensource
• https://github.com/Keyang/node-csvtojson
• http://aact.ctti-clinicaltrials.org/pipe_files_with_r
• https://www.coursera.org/learn/clinical-research
• http://tabula.technology/
• https://docs.aws.amazon.com/athena/latest/ug/code-samples.html
• https://docs.aws.amazon.com/athena/latest/ug/getting-started.html
• https://aws.amazon.com/about-aws/whats-new/2017/05/amazon-athena-adds-api-cli-aws-sdk-support-and-audit-logging-with-aws-cloudtrail/
• https://aws.amazon.com/blogs/big-data/10-best-practices-for-amazon-redshift-spectrum/
• https://wiki.openoffice.org/wiki/Documentation/DevGuide/Spreadsheets/Filter_Options#Filter_Options_for_the_CSV_Filter