NAMESPACE

# Generated by roxygen2: do not edit by hand

export(AggregatePeakCounts)
export(AnnotatePeaksFromGTF)
export(BaseComposition)
export(CountPeaks)
export(DUTest)
export(DetectAEU)
export(DetectUTRLengthShift)
export(FindPeaks)
export(GetExpressedPeaks)
export(GetRelativeExpression)
export(MergePeakCoordinates)
export(NewPeakSCE)
export(NewPeakSeurat)
export(PeakSeuratFromTransfer)
export(PlotCoverage)
export(PlotRelativeExpressionBox)
export(PlotRelativeExpressionTSNE)
export(PlotRelativeExpressionUMAP)
export(PlotRelativeExpressionViolin)
export(PlotUTRLengthShift)
export(ReadPeakCounts)
export(SelectGenePeaks)
export(SplitBam)
export(annotate_gr_from_gtf)
export(geneToGR)
import(GenomicRanges)
import(Gviz)
import(SingleCellExperiment)
import(dplyr)
import(ggplot2)
import(utils)
importFrom(Matrix,writeMM)
importFrom(foreach,"%dopar%")
importFrom(genefilter,plot)
importFrom(magrittr,"%>%")