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VCF parsing #14

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james-guevara opened this issue May 8, 2021 · 0 comments
Open

VCF parsing #14

james-guevara opened this issue May 8, 2021 · 0 comments

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@james-guevara
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james-guevara commented May 8, 2021

Should write a simple VCF parser for this package:
https://en.wikipedia.org/wiki/Variant_Call_Format
https://samtools.github.io/hts-specs/VCFv4.2.pdf


This has already been implemented with HTSlib (and its Nim wrapper https://github.com/brentp/hts-nim). But it'd be nice to have a pure Nim implementation.

Here are also hts-specs for Tabix index file format:
https://samtools.github.io/hts-specs/tabix.pdf

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