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load_data.Rmd : load & clean data from spreadsheets, wind speed data, some cluster analysis
plot_data : exploratory analysis, distribution, box plots, on phyto pigment data
map_template : download topo & coastline data to make interpolated data map
chemtax_analysis : uses chemtax excel outputs, do seasonality analysis for phyto groups
merg_pig_micro : combine piment & microscopy data. clean microscopy data. Adds index to each df. filter out unneeded rows. categorize taxa into functional types so that values from pigment & microscopy data are comparable.
ordination : PCoA experiments
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