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4. Build FrEDI Package #2

4. Build FrEDI Package

4. Build FrEDI Package #2

Workflow file for this run

### https://github.com/actions/upload-artifact
### https://github.blog/changelog/2021-11-10-github-actions-input-types-for-manual-workflows/
### https://docs.github.com/en/actions/using-workflows/caching-dependencies-to-speed-up-workflows
### https://github.com/r-lib/actions/tree/v2/setup-r-dependencies
### https://docs.github.com/en/actions/using-jobs/using-conditions-to-control-job-execution
### For uploading artifacts:
### "path:" is the output path where Pandoc will write the compiled PDF.
### Note, this should be the same directory as the input paper.md
name: Build FrEDI Package
on: [workflow_dispatch]
jobs:
compile_data:
runs-on: ubuntu-latest
env:
GITHUB_PAT: ${{ secrets.GITHUB_TOKEN }}
name: Load Package Code
steps:
- name: Checkout
uses: actions/checkout@v3
- name: Setup R
uses: r-lib/actions/setup-r@v2
- name: Setup R package dependencies
uses: r-lib/actions/setup-r-dependencies@v2
with:
cache: true
cache-version: 1
packages: |
any::tidyverse
any::ggpubr
any::openxlsx
any::devtools
- name: Remove existing build
run: |
rm *.tar.gz
- name: Run create_DoW_results
run: |
Rscript -e '
### Main repo path, FrEDI project path, scripts path
rPath0 <- ".";
pPath0 <- rPath0 |> file.path("FrEDI")
oPath0 <- pPath0 |> file.path("data", "defaultResults.rda")
###### Create Default Results ######
pPath0 |> devtools::load_all()
defaultResults <- run_fredi()
save(defaultResults, file=oPath0)
###### Update Documentation ######
###### - Build Manual
###### - Add and build vignettes
###### - Generate Documentation
roxygen2::roxygenise(pPath0)
devtools::document(pkg = pPath0)
# devtools::build_manual(pkg = pPath0)
# devtools::build_vignettes(pkg = pPath0)
###### Build Package ######
###### - Build Package but don't include vignettes
devtools::build(pkg=pPath0, path=rPath0)
'
- name: Commit results
run: |
git config --local core.autocrlf false
git config --local user.email "${{ github.actor }}@users.noreply.github.com"
git config --local user.name "${{ github.actor }}"
git add *.tar.gz
git pull origin ${{ github.head_ref }} --autostash --rebase -X ours
git commit -a -m "New package build"
git push