4. Build FrEDI Package #2
Workflow file for this run
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### https://github.com/actions/upload-artifact | |
### https://github.blog/changelog/2021-11-10-github-actions-input-types-for-manual-workflows/ | |
### https://docs.github.com/en/actions/using-workflows/caching-dependencies-to-speed-up-workflows | |
### https://github.com/r-lib/actions/tree/v2/setup-r-dependencies | |
### https://docs.github.com/en/actions/using-jobs/using-conditions-to-control-job-execution | |
### For uploading artifacts: | |
### "path:" is the output path where Pandoc will write the compiled PDF. | |
### Note, this should be the same directory as the input paper.md | |
name: Build FrEDI Package | |
on: [workflow_dispatch] | |
jobs: | |
compile_data: | |
runs-on: ubuntu-latest | |
env: | |
GITHUB_PAT: ${{ secrets.GITHUB_TOKEN }} | |
name: Load Package Code | |
steps: | |
- name: Checkout | |
uses: actions/checkout@v3 | |
- name: Setup R | |
uses: r-lib/actions/setup-r@v2 | |
- name: Setup R package dependencies | |
uses: r-lib/actions/setup-r-dependencies@v2 | |
with: | |
cache: true | |
cache-version: 1 | |
packages: | | |
any::tidyverse | |
any::ggpubr | |
any::openxlsx | |
any::devtools | |
- name: Remove existing build | |
run: | | |
rm *.tar.gz | |
- name: Run create_DoW_results | |
run: | | |
Rscript -e ' | |
### Main repo path, FrEDI project path, scripts path | |
rPath0 <- "."; | |
pPath0 <- rPath0 |> file.path("FrEDI") | |
oPath0 <- pPath0 |> file.path("data", "defaultResults.rda") | |
###### Create Default Results ###### | |
pPath0 |> devtools::load_all() | |
defaultResults <- run_fredi() | |
save(defaultResults, file=oPath0) | |
###### Update Documentation ###### | |
###### - Build Manual | |
###### - Add and build vignettes | |
###### - Generate Documentation | |
roxygen2::roxygenise(pPath0) | |
devtools::document(pkg = pPath0) | |
# devtools::build_manual(pkg = pPath0) | |
# devtools::build_vignettes(pkg = pPath0) | |
###### Build Package ###### | |
###### - Build Package but don't include vignettes | |
devtools::build(pkg=pPath0, path=rPath0) | |
' | |
- name: Commit results | |
run: | | |
git config --local core.autocrlf false | |
git config --local user.email "${{ github.actor }}@users.noreply.github.com" | |
git config --local user.name "${{ github.actor }}" | |
git add *.tar.gz | |
git pull origin ${{ github.head_ref }} --autostash --rebase -X ours | |
git commit -a -m "New package build" | |
git push | |