AMARETTO_1.13.0 Missing (filtered) dependency: curatedTCGAData ARRmNormalization_1.38.0 Missing (filtered) dependency: ARRmData ASpediaFI_1.11.0 Missing (filtered) dependency: mGSZ ATACCoGAPS_1.0.0 Missing (filtered) dependency: JASPAR2016 AneuFinder_1.26.0 Missing (filtered) dependency: AneuFinderData ArrayExpressHTS_1.47.0 Manually excluded. Reason build failure. Todo AutoPipe_0.1.6 Missing (filtered) dependency: ConsensusClusterPlus BAGS_2.38.0 Missing (filtered) dependency: breastCancerVDX BLMA_1.22.0 Missing (filtered) dependency: PADOG BRugs_0.9-1 Manually excluded. Reason needs OpenBUGS, not in nixpkgs. Or in ubuntu. And the website change log says it hasn't updated since 2014. And the ssl certificate is expired. BSGW_0.9.2 Missing (filtered) dependency: MfUSampler BSgenome.Cfamiliaris.UCSC.canFam2.masked_1.3.99-3.16 Missing (filtered) dependency: BSgenome.Cfamiliaris.UCSC.canFam2 BSgenome.Cfamiliaris.UCSC.canFam2.masked_1.3.99-3.16 Missing (filtered) dependency: BSgenome.Cfamiliaris.UCSC.canFam2 BioNAR_1.0.0 Manually excluded. Reason Tries to talk to experimentHub, can't find the spot BiocOncoTK_1.18.0 Missing (filtered) dependency: curatedTCGAData BitSeq_1.41.0 Manually excluded. Reason build failure, todo Boov_1.0.0 Missing (filtered) dependency: PolygonSoup CATALYST_1.22.0 Missing (filtered) dependency: ConsensusClusterPlus CATALYST_1.22.0 Missing (filtered) dependency: FlowSOM CDMConnector_0.1.0 Missing (filtered) dependency: arrow COHCAP_1.44.0 Missing (filtered) dependency: COHCAPanno CancerInSilico_2.18.0 Manually excluded. Reason Tests/catch.h:6524:45: error: size of array 'altStackMem' is not an integral constant-expression CancerSubtypes_1.24.0 Missing (filtered) dependency: ConsensusClusterPlus CaseBasedReasoning_0.1 Manually excluded. Reason compilation error: mismatched types 'const T2*' and 'int' 75 | arma::uvec order = arma::sort_index(x, sortDirection) + 1; CeTF_1.9.0 Missing (filtered) dependency: GenomicTools ChAMP_2.28.0 Missing (filtered) dependency: ChAMPdata ChAMP_2.28.0 Missing (filtered) dependency: Illumina450ProbeVariants.db ChAMP_2.28.0 Missing (filtered) dependency: goseq ChIC_1.18.0 Missing (filtered) dependency: ChIC.data ChIPXpress_1.42.0 Missing (filtered) dependency: ChIPXpressData ChromSCape_1.8.0 Missing (filtered) dependency: ConsensusClusterPlus CircSeqAlignTk_1.0.0 Missing (filtered) dependency: Rhisat2 ClickHouseHTTP_0.1.3 Missing (filtered) dependency: arrow CoMiRe_0.7.1 Missing (filtered) dependency: NonpModelCheck ConsensusClusterPlus_1.62.0 Missing (filtered) dependency: ALL CopywriteR_2.29.0 Missing (filtered) dependency: CopyhelpeR CreditRisk_0.1.3 Missing (filtered) dependency: fOptions CyTOFpower_1.4.0 Missing (filtered) dependency: CytoGLMM CyTOFpower_1.4.0 Missing (filtered) dependency: diffcyt CytoGLMM_1.6.0 Missing (filtered) dependency: speedglm DAPAR_1.30.0 Missing (filtered) dependency: DAPARdata DBR_1.4.0 Missing (filtered) dependency: MfUSampler DEGreport_1.34.0 Missing (filtered) dependency: ConsensusClusterPlus DExMA_1.6.0 Missing (filtered) dependency: DExMAdata DMCFB_1.12.0 Missing (filtered) dependency: speedglm DrugVsDisease_2.40.0 Missing (filtered) dependency: DrugVsDiseasedata DrugVsDisease_2.40.0 Missing (filtered) dependency: cMap2data EGSEA_1.26.0 Missing (filtered) dependency: EGSEAdata EGSEA_1.26.0 Missing (filtered) dependency: PADOG ELMER_2.22.0 Missing (filtered) dependency: ELMER.data ELMER_2.22.0 Missing (filtered) dependency: TCGAbiolinks EWCE_1.6.0 Missing (filtered) dependency: ewceData EpiMix_0.99.16 Missing (filtered) dependency: ELMER.data EpiMix_0.99.16 Missing (filtered) dependency: EpiMix.data EventPointer_3.6.0 Missing (filtered) dependency: speedglm ExGaussEstim_0.1 Missing (filtered) dependency: HI FMAdist_0.1.0 Missing (filtered) dependency: STAR FlowSOM_2.6.0 Missing (filtered) dependency: ConsensusClusterPlus GDELTtools_1.5 Missing (filtered) dependency: TimeWarp GEint_1.0 Missing (filtered) dependency: speedglm GRANBase_2.6.20 Missing (filtered) dependency: switchr GRANCore_0.2.7 Missing (filtered) dependency: switchr GSEABenchmarkeR_1.18.0 Missing (filtered) dependency: KEGGandMetacoreDzPathwaysGEO GSEABenchmarkeR_1.18.0 Missing (filtered) dependency: KEGGdzPathwaysGEO GeneTonic_2.2.0 Manually excluded. Reason object 'universal' is not exported by 'namespace:backbone' HiContacts_1.0.0 Missing (filtered) dependency: HiContactsData IP_0.1 Manually excluded. Reason can't convince it to find stringprep.ph ITALICS_2.58.0 Missing (filtered) dependency: ITALICSData KEGGlincs_1.24.0 Missing (filtered) dependency: KOdata LiquidAssociation_1.52.0 Missing (filtered) dependency: yeastCC MAGAR_1.6.0 Missing (filtered) dependency: RnBeads.hg19 MAGeCKFlute_2.2.0 Missing (filtered) dependency: depmap MeshesTools_1.0.0 Missing (filtered) dependency: PolygonSoup MetaCyto_1.20.0 Missing (filtered) dependency: FlowSOM MethReg_1.8.0 Missing (filtered) dependency: sesameData MfUSampler_1.0.6 Missing (filtered) dependency: HI MinBAR_1.1.3 Missing (filtered) dependency: ecospat MinkowskiSum_1.0.0 Missing (filtered) dependency: PolygonSoup MolgenisArmadillo_1.1.3 Missing (filtered) dependency: arrow MoonlightR_1.24.0 Missing (filtered) dependency: TCGAbiolinks NBSplice_1.15.0 Missing (filtered) dependency: mppa NetActivity_1.0.0 Missing (filtered) dependency: NetActivityData NetActivity_1.0.0 Missing (filtered) dependency: airway NxtIRFcore_1.4.0 Missing (filtered) dependency: NxtIRFdata OMICsPCA_1.16.0 Missing (filtered) dependency: OMICsPCAdata PADOG_1.40.0 Missing (filtered) dependency: KEGGdzPathwaysGEO PDATK_1.6.0 Missing (filtered) dependency: ConsensusClusterPlus PPInfer_1.24.0 Missing (filtered) dependency: yeastExpData PolygonSoup_1.0.1 Manually excluded. Reason build failure. Todo PortfolioOptim_1.1.1 Missing (filtered) dependency: Rsymphony PrInCE_1.14.0 Missing (filtered) dependency: speedglm Prostar_1.30.0 Missing (filtered) dependency: DAPARdata RFclust_0.1.2 Missing (filtered) dependency: ConsensusClusterPlus RGMQL_1.18.0 Missing (filtered) dependency: RGMQLlib RITAN_1.22.0 Missing (filtered) dependency: RITANdata RLSeq_1.3.0 Missing (filtered) dependency: RLHub RNASeqR_1.15.1 Missing (filtered) dependency: systemPipeRdata ROCpAI_1.10.0 Missing (filtered) dependency: fission ROI.plugin.cplex_0.3-0 Missing (filtered) dependency: Rcplex ROI.plugin.symphony_1.0-0 Missing (filtered) dependency: Rsymphony ROracle_1.3-1.1 Manually excluded. Reason oracle oci not in nixpkgs, unfree RQuantLib_0.4.17 Manually excluded. Reason not in nixpkgs RUVcorr_1.30.0 Missing (filtered) dependency: bladderbatch RUVnormalize_1.32.0 Missing (filtered) dependency: RUVnormalizeData RVA_0.0.5 Missing (filtered) dependency: GSVAdata Rblpapi_0.3.14 Manually excluded. Reason bloomberg, unfree Rbwa_1.2.0 Manually excluded. Reason still can't find kthread.o. See 1.0 RcisTarget_1.17.0 Missing (filtered) dependency: arrow Rcplex_0.3-5 Manually excluded. Reason unfree Rediscover_0.3.0 Missing (filtered) dependency: speedglm ReliabilityTheory_0.1.5 Missing (filtered) dependency: HI Rhisat2_1.14.0 Manually excluded. Reason build failure, todo Rmmquant_1.16.0 Missing (filtered) dependency: TBX20BamSubset RnaSeqSampleSize_2.8.0 Missing (filtered) dependency: RnaSeqSampleSizeData RsqMed_0.1.7.1 Missing (filtered) dependency: GMMAT Rsymphony_0.1-33 Manually excluded. Reason can't find SYMPHONY in nixpkgs SBGNview_1.12.0 Missing (filtered) dependency: SBGNview.data SCATE_1.8.0 Manually excluded. Reason loads SCATEData on build, which fails with experimenthub 'can't fail sensible if offline SCATE_1.8.0 Missing (filtered) dependency: SCATEData SICtools_1.28.0 Manually excluded. Reason Using embedded htslib, error: format not a string literal and no format arguments [-Werror=format-security] SMITE_1.26.0 Missing (filtered) dependency: geneLenDataBase SNAGEE_1.38.0 Missing (filtered) dependency: SNAGEEdata SpaDES.addins_0.1.4 Missing (filtered) dependency: SpaDES.core SpaDES.core_1.1.0 Manually excluded. Reason object 'file.move' is not exported by 'namespace:reproducible SpaDES_2.0.9 Missing (filtered) dependency: SpaDES.core SpliceWiz_1.0.0 Missing (filtered) dependency: NxtIRFdata SubgrpID_0.11 Missing (filtered) dependency: AIM SurviMChd_0.1.1 Missing (filtered) dependency: ICBayes TCGAbiolinksGUI_1.23.0 Missing (filtered) dependency: TCGAbiolinks TCGAbiolinksGUI_1.23.0 Missing (filtered) dependency: TCGAbiolinksGUI.data TCGAbiolinks_2.25.3 Missing (filtered) dependency: TCGAbiolinksGUI.data TDARACNE_1.47.0 Missing (filtered) dependency: GenKern TKCat_1.0.6 Missing (filtered) dependency: ClickHouseHTTP TPMplt_0.1.3 Missing (filtered) dependency: rowr TensorComplete_0.1.0 Missing (filtered) dependency: tensorregress ToxicR_22.8.1.0.3 Manually excluded. Reason build failure. Todo TraRe_1.5.0 Missing (filtered) dependency: vbsr Travel_1.6.0 Manually excluded. Reason error: 'class Cache_block' has no member named 'get_size' adapt4pv_0.2-2 Missing (filtered) dependency: speedglm adductomicsR_1.14.0 Missing (filtered) dependency: adductData affyContam_1.56.0 Missing (filtered) dependency: affydata airpart_1.6.0 Missing (filtered) dependency: smurf allestimates_0.2.2 Missing (filtered) dependency: speedglm alpine_1.24.0 Missing (filtered) dependency: speedglm appreci8R_1.16.0 Missing (filtered) dependency: COSMIC.67 arrayMvout_1.56.0 Missing (filtered) dependency: affyContam arrow_10.0.0 Manually excluded. Reason We need arrow 10.0, but nixpkgs is only up to 9.0.0. Todo babelmixr2_0.1.0 Missing (filtered) dependency: nlmixr2 babelmixr2_0.1.0 Missing (filtered) dependency: nlmixr2est bandle_1.2.0 Missing (filtered) dependency: pRolocdata bigstep_1.0.3 Missing (filtered) dependency: speedglm biscuiteer_1.12.0 Missing (filtered) dependency: biscuiteerData bitmexr_0.3.2 Manually excluded. Reason crypto, requires internet to build. bivpois_0.50-3.1 Manually excluded. Reason missing NAMESPACE blacksheepr_1.12.0 Missing (filtered) dependency: pasilla breakpointR_1.16.0 Missing (filtered) dependency: breakpointRdata btergm_1.10.6 Missing (filtered) dependency: speedglm ccmap_1.24.0 Missing (filtered) dependency: ccdata ccml_1.1.0 Missing (filtered) dependency: ConsensusClusterPlus cemco_0.1 Missing (filtered) dependency: clusteval censcyt_1.6.0 Missing (filtered) dependency: diffcyt chest_0.3.6 Missing (filtered) dependency: speedglm chipenrich_2.22.0 Missing (filtered) dependency: chipenrich.data chromstaR_1.24.0 Missing (filtered) dependency: chromstaRData cicero_1.16.0 Missing (filtered) dependency: monocle clustAnalytics_0.5.0 Missing (filtered) dependency: kdtools consensusDE_1.16.0 Missing (filtered) dependency: airway constrainedKriging_0.2.4 Missing (filtered) dependency: RandomFields cosmiq_1.32.0 Missing (filtered) dependency: faahKO cosmosR_1.6.0 Missing (filtered) dependency: dorothea crisprBwa_1.2.0 Missing (filtered) dependency: Rbwa crisprDesign_1.0.0 Missing (filtered) dependency: crisprScore crisprScore_1.2.0 Manually excluded. Reason loads crisprScoreData on build, which needs experimenthub crisprScore_1.2.0 Missing (filtered) dependency: crisprScoreData crisprVerse_1.0.0 Missing (filtered) dependency: crisprDesign crisprVerse_1.0.0 Missing (filtered) dependency: crisprScore crisprViz_1.0.0 Missing (filtered) dependency: crisprDesign dGAselID_1.2 Missing (filtered) dependency: ALL dTBM_2.0 Missing (filtered) dependency: tensorregress dataversionr_0.9.0 Missing (filtered) dependency: arrow dataversionr_0.9.0 Missing (filtered) dependency: diffdfs delaunay_1.1.1 Manually excluded. Reason build failure. Todo diffcyt_1.18.0 Missing (filtered) dependency: FlowSOM diffdfs_0.9.0 Missing (filtered) dependency: arrow disk.frame_0.7.2 Missing (filtered) dependency: arrow easier_1.4.0 Missing (filtered) dependency: dorothea easier_1.4.0 Missing (filtered) dependency: easierData ebmstate_0.1.3 Manually excluded. Reason undefined type name Sint' ecospat_3.3 Manually excluded. Reason namespace 'biomod2' 4.1-2 is being loaded, but < 4.0 is required elbird_0.2.5 Manually excluded. Reason no libkiwi in nixpkgs, and libwiki compilation needs LFS, and well, that appears broken in fetchgit epihet_1.13.0 Missing (filtered) dependency: EntropyExplorer epimutacions_1.2.0 Missing (filtered) dependency: epimutacionsData ergMargins_0.1.3 Missing (filtered) dependency: btergm exomePeak2_1.10.0 Missing (filtered) dependency: speedglm fastLiquidAssociation_1.34.0 Missing (filtered) dependency: LiquidAssociation flagme_1.54.0 Missing (filtered) dependency: gcspikelite flowCL_1.35.0 Missing (filtered) dependency: SPARQL gbifdb_0.1.2 Missing (filtered) dependency: arrow geneSLOPE_0.37.0 Manually excluded. Reason object 'create_lambda' is not exported by 'namespace:SLOPE' georob_0.3-14 Missing (filtered) dependency: RandomFields geostatsp_1.8.6 Manually excluded. Reason geostatsp/libs/geostatsp.so: undefined symbol: GET_SLOT goseq_1.50.0 Missing (filtered) dependency: geneLenDataBase gsean_1.18.0 Missing (filtered) dependency: PPInfer h5vc_2.32.0 Missing (filtered) dependency: h5vcData happign_0.1.6 Manually excluded. Reason build failure, needs internet?. Todo hit_0.4.0 Missing (filtered) dependency: speedglm iSubGen_1.0.1 Missing (filtered) dependency: ConsensusClusterPlus ibh_1.46.0 Missing (filtered) dependency: simpIntLists ideal_1.22.0 Missing (filtered) dependency: goseq isomiRs_1.26.0 Missing (filtered) dependency: DEGreport kmeRs_1.1.0 Missing (filtered) dependency: tcR lmdme_1.40.0 Missing (filtered) dependency: stemHypoxia longmixr_1.0.0 Missing (filtered) dependency: ConsensusClusterPlus ltmle_1.2-0 Missing (filtered) dependency: speedglm mCSEA_1.18.0 Missing (filtered) dependency: mCSEAdata maPredictDSC_1.36.0 Missing (filtered) dependency: LungCancerACvsSCCGEO metapro_1.5.8 Missing (filtered) dependency: rSymPy methylCC_1.12.0 Missing (filtered) dependency: FlowSorted.Blood.450k methylclock_1.4.0 Missing (filtered) dependency: methylclockData miRLAB_1.28.0 Missing (filtered) dependency: TCGAbiolinks miRcomp_1.28.0 Missing (filtered) dependency: miRcompData monocle_2.26.0 Missing (filtered) dependency: HSMMSingleCell musicatk_1.8.0 Missing (filtered) dependency: TCGAbiolinks neatmaps_2.1.0 Missing (filtered) dependency: ConsensusClusterPlus netmediate_0.1.0 Missing (filtered) dependency: btergm nlmixr2_2.0.8 Missing (filtered) dependency: nlmixr2extra nlmixr2_2.0.8 Missing (filtered) dependency: nlmixr2plot nlmixr2est_2.1.2 Missing (filtered) dependency: symengine nlmixr2extra_2.0.8 Missing (filtered) dependency: symengine nlmixr2lib_0.1.0 Missing (filtered) dependency: nlmixr2est nlmixr2plot_2.0.7 Missing (filtered) dependency: nlmixr2extra nlmm_1.0.1 Missing (filtered) dependency: HI npsp_0.7-5 Manually excluded. Reason fortran build issue. Todo nullranges_1.4.0 Missing (filtered) dependency: speedglm octad_1.0.0 Missing (filtered) dependency: octad.db optimalFlow_1.10.0 Missing (filtered) dependency: optimalFlowData ora_2.0-1 Missing (filtered) dependency: ROracle parqr_0.1.0 Missing (filtered) dependency: arrow pcxn_2.20.0 Missing (filtered) dependency: pcxnData pwrEWAS_1.12.0 Missing (filtered) dependency: pwrEWAS.data rcellminer_2.20.0 Missing (filtered) dependency: rcellminerData receptiviti_0.1.2 Missing (filtered) dependency: arrow rgsepd_1.30.0 Missing (filtered) dependency: goseq rlibkriging_0.7-0 Manually excluded. Reason No rule to make target '/build/rlibkriging/src/../inst//lib/libKriging.a', needed by 'rlibkriging.so'. Stop. rshift_2.1.1 Manually excluded. Reason no cargo lock rsqliteadmin_1.0.1 Missing (filtered) dependency: disk.frame scRNAtools_1.0 Missing (filtered) dependency: ALL scRecover_1.13.0 Missing (filtered) dependency: Rmagic scanMiRApp_1.4.0 Missing (filtered) dependency: scanMiRData seq2pathway_1.30.0 Missing (filtered) dependency: seq2pathway.data seqCNA_1.44.0 Missing (filtered) dependency: seqCNA.annot sesame_1.16.0 Missing (filtered) dependency: sesameData sfarrow_0.4.1 Missing (filtered) dependency: arrow signatureSearch_1.12.0 Manually excluded. Reason build failure, todo singleCellTK_2.8.0 Missing (filtered) dependency: GSVAdata singleCellTK_2.8.0 Missing (filtered) dependency: TENxPBMCData singleCellTK_2.8.0 Missing (filtered) dependency: celldex singleCellTK_2.8.0 Missing (filtered) dependency: scRNAseq smurf_1.1.3 Missing (filtered) dependency: speedglm sojourner_1.11.0 Missing (filtered) dependency: sampSurf spagmix_0.3-5 Missing (filtered) dependency: RandomFields splineTimeR_1.26.0 Missing (filtered) dependency: FIs stabiliser_1.0.2 Missing (filtered) dependency: bigstep starvz_0.7.1 Missing (filtered) dependency: arrow strand_0.2.0 Missing (filtered) dependency: arrow string2path_0.1.1 Manually excluded. Reason Cargo.lock references extendr-api github revision that no longer exists surveyvoi_1.0.5 Missing (filtered) dependency: Rsymphony survtmle_1.1.1 Missing (filtered) dependency: speedglm switchrGist_0.2.5 Missing (filtered) dependency: switchr switchr_0.14.5 Manually excluded. Reason R package managment (not necessary on Nix). Cannot open the connection to 'http://bioconductor.org/config.yaml' symengine_0.2.2 Manually excluded. Reason undefined symbol: basic_abs? tensorregress_4.0 Missing (filtered) dependency: speedglm timsr_0.0.3 Missing (filtered) dependency: opentimsr tradestatistics_4.4.0 Missing (filtered) dependency: arrow treekoR_1.6.0 Missing (filtered) dependency: diffcyt uSORT_1.24.0 Missing (filtered) dependency: monocle vapour_0.8.82 Manually excluded. Reason 'class GDALDataset' has no member named 'SetSpatialRef' vcrpart_1.0-4 Manually excluded. Reason error: too few arguments to function 'dgemv_' vissE_1.6.0 Missing (filtered) dependency: msigdb wallace_1.1.3 Missing (filtered) dependency: ecospat xpose.nlmixr2_0.4.0 Missing (filtered) dependency: nlmixr2est