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#Annotators

Some text annotators supporting fungal enzyme discovery.

##mycoMINE

A NLP pipeline that supports the extraction of relevant mentions from literature related to fungal enzymes.

  • requires GATE 7.2 and Java 1.7 or higher

  • the application has been exported with its resources, but mycoMINE/application-resources/proteins/ac2sq.zip must be unzipped before running the pipeline.

  • usage:

    -- in GATE GUI: Applications > Restore Application from File... > application.xgapp

    -- in java projects: do not forget to set System property gate.home to your gate installation directory, and to make gate.jar and all libraries under gate/lib directory available on your classpath environment variable. (integration examples to be found here)

Please consult the lib .jar files for their respective licenses.

##substrateMINE

A GATE-based pipeline for substrate name tagging.

  • requires GATE 7.2 and Java 1.7

  • the application has been exported with its resources

  • usage:

    -- in GATE GUI: Applications > Restore Application from File... > application.xgapp

    -- in java projects: do not forget to set System property gate.home to your gate installation directory, and to make gate.jar and all libraries under gate/lib directory available on your classpath environment variable. (integration examples to be found here)

Please consult the lib .jar files for their respective licenses.