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feat: implement memote QC and CI #19

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3 of 6 tasks
edkerk opened this issue Oct 17, 2018 · 1 comment
Open
3 of 6 tasks

feat: implement memote QC and CI #19

edkerk opened this issue Oct 17, 2018 · 1 comment
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feat new feature or request wip work in progress

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@edkerk
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edkerk commented Oct 17, 2018 •
edited by sulheim
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Model quality will be tracked using memote, by running generic tests, but also implementing scoGEM specific tests, such as growth on different nutrient sources, survival of knockout strains and comparison with transposon data. Initially, memote runs locally, but when scoGEM is released, memote will be implemented through continuous integration (CI).

  • Prepare repo for memote
  • Define growth test for nutrient sources
  • Define growth test for knockouts
  • Define growth test for transposon data
  • Generate memote history report
  • When repo is open, implement memote as CI
@edkerk edkerk added feat new feature or request wip work in progress labels Oct 17, 2018
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edkerk commented Oct 18, 2018

Some basic tests are developed in the feat/tests branch. Ideally these could use data files that could also be used by memote.

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