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fix: unblock and mass- & charge balance methylenomycin pathway #1

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sulheim opened this issue Aug 30, 2018 · 2 comments
Open

fix: unblock and mass- & charge balance methylenomycin pathway #1

sulheim opened this issue Aug 30, 2018 · 2 comments
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bug an existing feature is/should be changed

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@sulheim
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sulheim commented Aug 30, 2018

This pathway is reconstructed according to BioCyc, but is not mass and charged balanced. (It isn't in BioCyc either)
@sulheim sulheim added the feat new feature or request label Aug 30, 2018
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sulheim commented Aug 30, 2018

Additionally, the pathway is blocked: the first intermediate (mmyint1_c, pentose intermedite) is not produced anywhere. Which pentose is the precursor for this metabolite/reaction?

@edkerk edkerk changed the title Methylenomycin pathway is not mass and charged balanced fix: unblock and mass- & charge balance methylenomycin pathway Oct 17, 2018
@edkerk edkerk added bug an existing feature is/should be changed and removed feat new feature or request labels Oct 17, 2018
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sulheim commented Oct 22, 2018 •
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There is also missing a recycling of the acyl-carrier protein. There should probably be a reaction similar to ACTS1 for the methylenomycin pathway

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