diff --git a/data/deprecatedIdentifiers/deprecatedMetabolites.tsv b/data/deprecatedIdentifiers/deprecatedMetabolites.tsv index b1cf6528..fd4daa6a 100644 --- a/data/deprecatedIdentifiers/deprecatedMetabolites.tsv +++ b/data/deprecatedIdentifiers/deprecatedMetabolites.tsv @@ -2203,4 +2203,9 @@ mets metsNoComp metBiGGID metKEGGID metHMDBID metChEBIID metPubChemID metLipidMa "MAM03573m" "MAM03573" "etfox" "" "" "" "" "" "" "" "etfox" "MNXM11479" "" "etfox_m" "MAM03574m" "MAM03574" "etfrd" "" "" "" "" "" "" "" "etfrd" "MNXM11480" "" "etfrd_m" "MAM03494c" "MAM03494" "c3dc" "" "" "" "22833583" "" "" "" "c3dc" "" "" "c3dc_c" -"MAM03494e" "MAM03494" "c3dc" "" "" "" "22833583" "" "" "" "c3dc" "" "" "c3dc_s" \ No newline at end of file +"MAM03494e" "MAM03494" "c3dc" "" "" "" "22833583" "" "" "" "c3dc" "" "" "c3dc_s" +"MAM03684e" "MAM03684" "hxa" "" "" "" "" "" "" "" "hxa" "MNXM1653" "" "hxa_s" +"MAM03684x" "MAM03684" "hxa" "" "" "" "" "" "" "" "hxa" "MNXM1653" "" "hxa_p" +"MAM03684m" "MAM03684" "hxa" "" "" "" "" "" "" "" "hxa" "MNXM1653" "" "hxa_m" +"MAM03684c" "MAM03684" "hxa" "" "" "CHEBI:17120" "" "" "" "" "hxa" "MNXM1653" "" "hxa_c" +"MAM00759c" "MAM00759" "" "C13712" "" "" "" "LMST02030130" "" "" "M00759" "MNXM3494" "m00759c" "m00759c" diff --git a/data/deprecatedIdentifiers/deprecatedReactions.tsv b/data/deprecatedIdentifiers/deprecatedReactions.tsv index 96e470b5..5474d1cc 100644 --- a/data/deprecatedIdentifiers/deprecatedReactions.tsv +++ b/data/deprecatedIdentifiers/deprecatedReactions.tsv @@ -111,3 +111,6 @@ rxns rxnKEGGID rxnBiGGID rxnEHMNID rxnHepatoNET1ID rxnREACTOMEID rxnRecon3DID rx "MAR20015" "R02549" "ABUTD;ABUTDm;R_ABUTD;R_ABUTDm" "" "" "" "" "MNXR95191" "" "" "" 0 "RHEA:19105" "" "" "MAR20014" "R03283" "R_TMABADH;TMABADH" "" "" "" "" "MNXR104876" "" "" "" 0 "RHEA:17985" "" "" "MAR20052" "" "ALDD21;RE3076X;R_ALDD21;R_RE3076X" "" "" "" "" "MNXR95747" "" "" "" 0 "RHEA:44016" "" "" +"MAR09949" "" "FACOAE60" "" "" "" "HXCOAc" "MNXR99139" "" "" "" 0 "" "" "HXCOAc" +"MAR11292" "" "HXAt3" "" "" "" "HXAt3" "" "" "" "" 0 "" "" "HXAt3" +"MAR11293" "" "EX_hxa_e" "" "" "" "EX_hxa[e]" "MNXR98664" "" "" "" 0 "" "" "EX_hxa[e]" diff --git a/model/Human-GEM.yml b/model/Human-GEM.yml index b2c7fa08..56d904f1 100644 --- a/model/Human-GEM.yml +++ b/model/Human-GEM.yml @@ -4,7 +4,7 @@ short_name: "Human-GEM" full_name: "Generic genome-scale metabolic model of Homo sapiens" version: "" - date: "2023-06-07" + date: "2023-06-19" taxonomy: "9606" github: "https://github.com/SysBioChalmers/Human-GEM" description: "Genome-scale metabolic models are valuable tools to study metabolism and provide a scaffold for the integrative analysis of omics data. This is the latest version of Human-GEM, which is a genome-scale metabolic model of a generic human cell. The objective of Human-GEM is to serve as a community model for enabling integrative and mechanistic studies of human metabolism." @@ -9961,14 +9961,6 @@ - charge: -1 - inchis: "" - metFrom: "HMRdatabase" - - !!omap - - id: "MAM00759c" - - name: "3alpha-hydroxy-5alpha-pregnan-20-one" - - compartment: "c" - - formula: "C21H34O2" - - charge: 0 - - inchis: "" - - metFrom: "HMRdatabase" - !!omap - id: "MAM00760c" - name: "3-amino-propanal" @@ -53553,14 +53545,6 @@ - charge: -1 - inchis: "" - metFrom: "Recon3D" - - !!omap - - id: "MAM03684c" - - name: "Hexanoate (N-C6:0)" - - compartment: "c" - - formula: "C6H11O2" - - charge: -1 - - inchis: "" - - metFrom: "Recon3D" - !!omap - id: "MAM03976c" - name: "Cia-5,8, Tetradecadienoic Acid" @@ -54705,22 +54689,6 @@ - charge: -1 - inchis: "" - metFrom: "Recon3D" - - !!omap - - id: "MAM03684m" - - name: "Hexanoate (N-C6:0)" - - compartment: "m" - - formula: "C6H11O2" - - charge: -1 - - inchis: "" - - metFrom: "Recon3D" - - !!omap - - id: "MAM03684x" - - name: "Hexanoate (N-C6:0)" - - compartment: "x" - - formula: "C6H11O2" - - charge: -1 - - inchis: "" - - metFrom: "Recon3D" - !!omap - id: "MAM02169e" - name: "indoleacetate" @@ -58993,14 +58961,6 @@ - charge: 0 - inchis: "" - metFrom: "Recon3D" - - !!omap - - id: "MAM03684e" - - name: "Hexanoate (N-C6:0)" - - compartment: "e" - - formula: "C6H11O2" - - charge: -1 - - inchis: "" - - metFrom: "Recon3D" - !!omap - id: "MAM01954c" - name: "glcnac-alpha-1,4-core 1" @@ -68001,6 +67961,22 @@ - charge: -1 - inchis: "" - metFrom: "" + - !!omap + - id: "MAM02120x" + - name: "hexanoic acid" + - compartment: "x" + - formula: "C6H11O2" + - charge: -1 + - inchis: "" + - metFrom: "HMRdatabase" + - !!omap + - id: "MAM02120m" + - name: "hexanoic acid" + - compartment: "m" + - formula: "C6H11O2" + - charge: -1 + - inchis: "" + - metFrom: "HMRdatabase" - reactions: - !!omap - id: "MAR03905" @@ -123754,8 +123730,8 @@ - id: "MAR02003" - name: "3alpha-hydroxy-5alpha-pregnan-20-one:NADP+ 3-oxidoreductase (A-specific)" - metabolites: !!omap - - MAM00759c: -1 - MAM01072c: 1 + - MAM01314c: -1 - MAM02039c: 1 - MAM02554c: -1 - MAM02555c: 1 @@ -167720,7 +167696,7 @@ - upper_bound: 1000 - gene_reaction_rule: "ENSG00000113396 or ENSG00000121769 or ENSG00000130304 or ENSG00000135218 or ENSG00000143554 or ENSG00000145384 or ENSG00000163586 or ENSG00000164434 or ENSG00000164687 or ENSG00000167114 or ENSG00000170231 or ENSG00000170323 or ENSG00000197416 or ENSG00000205186" - rxnNotes: "" - - rxnFrom: "HMRdatabase" + - rxnFrom: "HMRdatabase;Recon3D" - eccodes: "" - references: "" - subsystem: @@ -212293,7 +212269,7 @@ - upper_bound: 1000 - gene_reaction_rule: "" - rxnNotes: "" - - rxnFrom: "HMRdatabase" + - rxnFrom: "HMRdatabase;Recon3D" - eccodes: "" - references: "" - subsystem: @@ -219332,7 +219308,6 @@ - MAM00660c: -1 - MAM00660r: -1 - MAM00747r: -1 - - MAM00759c: -1 - MAM00828r: -1 - MAM00830c: -1 - MAM00925c: -1 @@ -219351,6 +219326,7 @@ - MAM01001x: -1 - MAM01011c: -1 - MAM01012c: -1 + - MAM01314c: -1 - MAM01792r: -1 - MAM01794r: -1 - MAM02469c: -1 @@ -251030,25 +251006,6 @@ - subsystem: - "Fatty acid oxidation" - confidence_score: 0 - - !!omap - - id: "MAR09949" - - name: "Acylcoa Hydrolase, Cytosolic" - - metabolites: !!omap - - MAM01597c: 1 - - MAM02039c: 1 - - MAM02040c: -1 - - MAM02122c: -1 - - MAM03684c: 1 - - lower_bound: -1000 - - upper_bound: 1000 - - gene_reaction_rule: "" - - rxnNotes: "" - - rxnFrom: "Recon3D" - - eccodes: "3.1.2.2" - - references: "" - - subsystem: - - "Fatty acid oxidation" - - confidence_score: 0 - !!omap - id: "MAR09950" - name: "Hydrolysis of Tetradecadienoyl Coenzyme A to Cis-5, 8-Tetradecadienoic Acid" @@ -256169,8 +256126,8 @@ - MAM01597m: 1 - MAM02039m: 1 - MAM02040m: -1 + - MAM02120m: 1 - MAM02122m: -1 - - MAM03684m: 1 - lower_bound: 0 - upper_bound: 1000 - gene_reaction_rule: "" @@ -256220,8 +256177,8 @@ - MAM01597x: 1 - MAM02039x: 1 - MAM02040x: -1 + - MAM02120x: 1 - MAM02122x: -1 - - MAM03684x: 1 - lower_bound: -1000 - upper_bound: 1000 - gene_reaction_rule: "" @@ -271773,8 +271730,8 @@ - id: "MAR11290" - name: "Transport of Hexanoate (N-C6:0), Mitochondrial" - metabolites: !!omap - - MAM03684c: 1 - - MAM03684m: -1 + - MAM02120c: 1 + - MAM02120m: -1 - lower_bound: -1000 - upper_bound: 1000 - gene_reaction_rule: "" @@ -271789,24 +271746,8 @@ - id: "MAR11291" - name: "Transport of Hexanoate (N-C6:0), Peroxisome" - metabolites: !!omap - - MAM03684c: 1 - - MAM03684x: -1 - - lower_bound: -1000 - - upper_bound: 1000 - - gene_reaction_rule: "" - - rxnNotes: "" - - rxnFrom: "Recon3D" - - eccodes: "" - - references: "" - - subsystem: - - "Transport reactions" - - confidence_score: 0 - - !!omap - - id: "MAR11292" - - name: "Transport of Hexanoate (N-C6:0), Extracellular" - - metabolites: !!omap - - MAM03684c: -1 - - MAM03684e: 1 + - MAM02120c: 1 + - MAM02120x: -1 - lower_bound: -1000 - upper_bound: 1000 - gene_reaction_rule: "" @@ -271817,21 +271758,6 @@ - subsystem: - "Transport reactions" - confidence_score: 0 - - !!omap - - id: "MAR11293" - - name: "Exchange of Hexanoate (N-C6:0)" - - metabolites: !!omap - - MAM03684e: -1 - - lower_bound: -1000 - - upper_bound: 1000 - - gene_reaction_rule: "" - - rxnNotes: "" - - rxnFrom: "Recon3D" - - eccodes: "" - - references: "" - - subsystem: - - "Exchange/demand reactions" - - confidence_score: 0 - !!omap - id: "MAR11294" - name: "Hydrolysis of Fatty Acyl Coenzyme A (14:1)" @@ -275993,7 +275919,7 @@ - gene_reaction_rule: "" - rxnNotes: "https://www.springer.com/gp/book/9789400957800" - rxnFrom: "Recon3D" - - eccodes: "" + - eccodes: "3.1.2.2" - references: "PMID:8371066" - subsystem: - "Fatty acid oxidation" @@ -305941,9 +305867,9 @@ - metabolites: !!omap - MAM02039c: 2 - MAM02040c: -1 + - MAM02120c: 1 - MAM02554c: -1 - MAM02555c: 1 - - MAM03684c: 1 - MAM20037c: -1 - lower_bound: 0 - upper_bound: 1000 diff --git a/model/metabolites.tsv b/model/metabolites.tsv index a4d6f762..1a268fa6 100644 --- a/model/metabolites.tsv +++ b/model/metabolites.tsv @@ -516,7 +516,7 @@ mets metsNoComp metBiGGID metKEGGID metHMDBID metChEBIID metPubChemID metLipidMa "MAM00270c" "MAM00270" "wharachd" "C14748" "" "CHEBI:34306" "5283157" "" "" "" "wharachd" "MNXM22451" "m00270c" "m00270c" "MAM00270r" "MAM00270" "wharachd" "C14748" "" "CHEBI:34306" "5283157" "" "" "" "wharachd" "MNXM22451" "m00270r" "m00270r" "MAM00271c" "MAM00271" "" "" "" "" "" "" "CE6447" "" "CE6447" "MNXM163636" "m00271c" "m00271c" -"MAM00272c" "MAM00272" "" "" "" "" "" "" "CE6459" "" "CE6459" "MNXM164048" "m00272c" "m00272c" +"MAM00272c" "MAM00272" "" "" "" "" "" "" "CE6459" "" "CE6459" "MNXM727334" "m00272c" "m00272c" "MAM00273c" "MAM00273" "" "" "" "" "" "" "CE6458" "" "CE6458" "MNXM164048" "m00273c" "m00273c" "MAM00274c" "MAM00274" "" "" "" "" "" "" "CE2304" "" "CE2304" "MNXM150158" "m00274c" "m00274c" "MAM00274r" "MAM00274" "" "" "" "" "" "" "CE2304" "" "CE2304" "MNXM150158" "m00274r" "m00274r" @@ -697,7 +697,7 @@ mets metsNoComp metBiGGID metKEGGID metHMDBID metChEBIID metPubChemID metLipidMa "MAM00380x" "MAM00380" "15HPET" "C05966" "HMDB0004244" "CHEBI:15628" "5280893" "LMFA03060014" "" "" "15HPET" "MNXM162620;MNXM2314" "m00380p" "m00380p" "MAM00380r" "MAM00380" "15HPET" "C05966" "HMDB0004244" "CHEBI:15628" "5280893" "LMFA03060014" "" "" "15HPET" "MNXM162620;MNXM2314" "m00380r" "m00380r" "MAM00381c" "MAM00381" "" "" "" "" "" "LMFA03010206" "" "" "M00381" "MNXM4253" "m00381c" "m00381c" -"MAM00382c" "MAM00382" "" "" "" "" "" "LMFA03010051" "" "" "M00382" "MNXM33412" "m00382c" "m00382c" +"MAM00382c" "MAM00382" "" "" "" "" "" "LMFA03010051" "" "" "M00382" "MNXM734306" "m00382c" "m00382c" "MAM00383c" "MAM00383" "" "" "" "" "" "LMFA03010021" "" "" "M00383" "MNXM33413" "m00383c" "m00383c" "MAM00384c" "MAM00384" "" "" "" "" "5283052" "" "CE5304" "" "CE5304" "MNXM33412" "m00384c" "m00384c" "MAM00385c" "MAM00385" "" "" "" "" "404025" "" "CE4877" "" "CE4877" "MNXM164061" "m00385c" "m00385c" @@ -1177,8 +1177,8 @@ mets metsNoComp metBiGGID metKEGGID metHMDBID metChEBIID metPubChemID metLipidMa "MAM00716c" "MAM00716" "" "" "" "" "" "" "CE4849" "" "CE4849" "MNXM150760" "m00716c" "m00716c" "MAM00717x" "MAM00717" "" "" "" "" "" "" "CE4832" "" "CE4832" "MNXM481924" "m00717p" "m00717p" "MAM00718c" "MAM00718" "" "" "" "" "" "" "CE4818" "" "CE4818" "MNXM164189" "m00718c" "m00718c" -"MAM00719c" "MAM00719" "" "" "" "" "" "" "CE2878" "" "CE2878" "MNXM140" "m00719c" "m00719c" -"MAM00719r" "MAM00719" "" "" "" "" "" "" "CE2878" "" "CE2878" "MNXM140" "m00719r" "m00719r" +"MAM00719c" "MAM00719" "" "" "" "" "" "" "CE2878" "" "CE2878" "MNXM1106760" "m00719c" "m00719c" +"MAM00719r" "MAM00719" "" "" "" "" "" "" "CE2878" "" "CE2878" "MNXM1106760" "m00719r" "m00719r" "MAM00720c" "MAM00720" "" "" "" "" "107564" "" "CE2866" "" "CE2866" "MNXM1986" "m00720c" "m00720c" "MAM00720r" "MAM00720" "" "" "" "" "107564" "" "CE2866" "" "CE2866" "MNXM1986" "m00720r" "m00720r" "MAM00721c" "MAM00721" "" "" "" "" "" "" "CE2870" "" "CE2870" "MNXM164192" "m00721c" "m00721c" @@ -1243,7 +1243,6 @@ mets metsNoComp metBiGGID metKEGGID metHMDBID metChEBIID metPubChemID metLipidMa "MAM00758m" "MAM00758" "dhcholestanate" "C04554" "HMDB0000359" "CHEBI:48467" "53477686" "LMST04030066" "" "HC01313" "dhcholestanate" "MNXM162671;MNXM688" "m00758m" "m00758m" "MAM00758x" "MAM00758" "dhcholestanate" "C04554" "HMDB0000359" "CHEBI:48467" "53477686" "LMST04030066" "" "HC01313" "dhcholestanate" "MNXM162671;MNXM688" "m00758p" "m00758p" "MAM00758r" "MAM00758" "dhcholestanate" "C04554" "HMDB0000359" "CHEBI:48467" "53477686" "LMST04030066" "" "HC01313" "dhcholestanate" "MNXM162671;MNXM688" "m00758r" "m00758r" -"MAM00759c" "MAM00759" "" "C13712" "" "" "" "LMST02030130" "" "" "M00759" "MNXM3494" "m00759c" "m00759c" "MAM00760c" "MAM00760" "" "C05665" "" "CHEBI:58374" "75" "" "" "" "bamppald" "MNXM43758" "m00760c" "m00760c" "MAM00761m" "MAM00761" "" "" "" "" "3081084" "" "CE3038" "" "CE3038" "MNXM6853" "m00761m" "m00761m" "MAM00762g" "MAM00762" "cs_hs_linkage" "C04903" "" "G00157" "" "" "" "" "cs_hs_linkage" "MNXM147451" "m00762g" "m00762g" @@ -1668,7 +1667,7 @@ mets metsNoComp metBiGGID metKEGGID metHMDBID metChEBIID metPubChemID metLipidMa "MAM01058x" "MAM01058" "" "" "" "" "" "LMFA03060075" "CE2567" "" "CE2567" "MNXM162458;MNXM6912" "m01058p" "m01058p" "MAM01058r" "MAM01058" "" "" "" "" "" "LMFA03060075" "CE2567" "" "CE2567" "MNXM162458;MNXM6912" "m01058r" "m01058r" "MAM01059c" "MAM01059" "" "C17938" "" "" "" "" "CE1562" "" "CE1562" "MNXM6292" "m01059c" "m01059c" -"MAM01060c" "MAM01060" "" "" "" "" "92945" "" "CE2964" "" "CE2964" "MNXM164331" "m01060c" "m01060c" +"MAM01060c" "MAM01060" "" "" "" "" "92945" "" "CE2964" "" "CE2964" "MNXM726413" "m01060c" "m01060c" "MAM01061c" "MAM01061" "" "" "" "" "" "" "CE5828" "" "CE5828" "MNXM130498" "m01061c" "m01061c" "MAM01062c" "MAM01062" "" "" "" "" "" "" "CE5931" "" "CE5931" "" "m01062c" "m01062c" "MAM01063c" "MAM01063" "" "" "" "" "" "" "CE5930" "" "CE5930" "" "m01063c" "m01063c" @@ -2097,8 +2096,8 @@ mets metsNoComp metBiGGID metKEGGID metHMDBID metChEBIID metPubChemID metLipidMa "MAM01318c" "MAM01318" "" "C19592" "" "" "" "" "" "" "M01318" "MNXM10642" "m01318c" "m01318c" "MAM01319c" "MAM01319" "" "C19581" "" "" "" "" "" "" "M01319" "MNXM10644" "m01319c" "m01319c" "MAM01320c" "MAM01320" "" "C19580" "" "" "" "" "" "" "M01320" "MNXM10645" "m01320c" "m01320c" -"MAM01321c" "MAM01321" "" "" "" "" "" "" "CE5853" "" "CE5853" "MNXM15963" "m01321c" "m01321c" -"MAM01322c" "MAM01322" "gal1p" "C03384" "" "CHEBI:17973" "123912" "" "" "" "gal1p" "MNXM336" "m01322c" "m01322c" +"MAM01321c" "MAM01321" "" "" "" "" "" "" "CE5853" "" "CE5853" "MNXM739689" "m01321c" "m01321c" +"MAM01322c" "MAM01322" "gal1p" "C03384" "" "CHEBI:17973" "123912" "" "" "" "gal1p" "MNXM1106067" "m01322c" "m01322c" "MAM01323c" "MAM01323" "m1mpdol__L" "C05861" "" "CHEBI:28067" "" "" "" "" "m1mpdol_L" "MNXM148043" "m01323c" "m01323c" "MAM01324c" "MAM01324" "acgagbside_hs" "" "" "" "" "" "" "" "acgagbside_hs" "MNXM7051" "m01324c" "m01324c" "MAM01324g" "MAM01324" "acgagbside_hs" "" "" "" "" "" "" "" "acgagbside_hs" "MNXM7051" "m01324g" "m01324g" @@ -2712,7 +2711,7 @@ mets metsNoComp metBiGGID metKEGGID metHMDBID metChEBIID metPubChemID metLipidMa "MAM01630m" "MAM01630" "cytd" "C00475" "HMDB0000089" "CHEBI:17562" "6175" "" "" "HC00381" "cytd" "MNXM338" "m01630m" "m01630m" "MAM01630n" "MAM01630" "cytd" "C00475" "HMDB0000089" "CHEBI:17562" "6175" "" "" "HC00381" "cytd" "MNXM338" "m01630n" "m01630n" "MAM01630e" "MAM01630" "cytd" "C00475" "HMDB0000089" "CHEBI:17562" "6175" "" "" "HC00381" "cytd" "MNXM338" "m01630s" "m01630s" -"MAM01631m" "MAM01631" "" "C00524" "" "CHEBI:83739" "" "" "" "" "M01631" "MNXM5749" "m01631m" "m01631m" +"MAM01631m" "MAM01631" "" "C00524" "" "CHEBI:83739" "" "" "" "" "M01631" "MNXM11246" "m01631m" "m01631m" "MAM01632c" "MAM01632" "csn" "C00380" "HMDB0000630" "CHEBI:16040" "597" "" "" "" "csn" "MNXM761" "m01632c" "m01632c" "MAM01632e" "MAM01632" "csn" "C00380" "HMDB0000630" "CHEBI:16040" "597" "" "" "" "csn" "MNXM761" "m01632s" "m01632s" "MAM01633c" "MAM01633" "3aib__D" "C01205" "" "CHEBI:16320" "5459822" "" "" "HC00715" "3aib_D" "MNXM162802;MNXM786" "m01633c" "m01633c" @@ -2812,7 +2811,7 @@ mets metsNoComp metBiGGID metKEGGID metHMDBID metChEBIID metPubChemID metLipidMa "MAM01674m" "MAM01674" "dpcoa" "C00882" "" "CHEBI:15468" "444485" "" "" "HC00575" "dpcoa" "MNXM481" "m01674m" "m01674m" "MAM01675c" "MAM01675" "dsmsterol" "C01802" "HMDB0002719" "CHEBI:17737" "439577" "LMST01010016" "" "HC00847" "dsmsterol" "MNXM162959;MNXM695" "m01675c" "m01675c" "MAM01676c" "MAM01676" "" "C05234" "" "" "" "" "" "" "M01676" "MNXM17230" "m01676c" "m01676c" -"MAM01677c" "MAM01677" "" "C00721" "" "" "" "" "" "" "M01677" "MNXM1003" "m01677c" "m01677c" +"MAM01677c" "MAM01677" "" "C00721" "" "" "" "" "" "" "M01677" "MNXM1103451" "m01677c" "m01677c" "MAM01678c" "MAM01678" "" "C00721" "" "" "" "" "" "" "M01678" "MNXM1003" "m01678c" "m01678c" "MAM01679c" "MAM01679" "galside_hs" "C02686" "" "CHEBI:12947" "" "" "" "" "galside_hs" "MNXM5165" "m01679c" "m01679c" "MAM01679g" "MAM01679" "galside_hs" "C02686" "" "CHEBI:12947" "" "" "" "" "galside_hs" "MNXM5165" "m01679g" "m01679g" @@ -2992,7 +2991,7 @@ mets metsNoComp metBiGGID metKEGGID metHMDBID metChEBIID metPubChemID metLipidMa "MAM01758c" "MAM01758" "xyl__D" "C00181" "" "CHEBI:15936" "644160" "" "" "" "xyl_D" "MNXM348" "m01758c" "m01758c" "MAM01758l" "MAM01758" "xyl__D" "C00181" "" "CHEBI:15936" "644160" "" "" "" "xyl_D" "MNXM348" "m01758l" "m01758l" "MAM01758e" "MAM01758" "xyl__D" "C00181" "" "CHEBI:15936" "644160" "" "" "" "xyl_D" "MNXM348" "m01758s" "m01758s" -"MAM01759c" "MAM01759" "xylu__D" "C00310" "HMDB0001644" "CHEBI:17140" "5289590" "" "" "" "xylu_D" "MNXM597" "m01759c" "m01759c" +"MAM01759c" "MAM01759" "xylu__D" "C00310" "HMDB0001644" "CHEBI:17140" "5289590" "" "" "" "xylu_D" "MNXM731281" "m01759c" "m01759c" "MAM01760c" "MAM01760" "xu1p__D" "" "HMDB0006534" "" "14844436" "" "" "" "xu1p_D" "MNXM164720" "m01760c" "m01760c" "MAM01761c" "MAM01761" "xu5p__D" "C00231" "" "CHEBI:16332" "439190" "" "" "HC00209" "xu5p_D" "MNXM186" "m01761c" "m01761c" "MAM01762c" "MAM01762" "" "" "" "" "" "" "CE2751" "" "CE2751" "MNXM164752" "m01762c" "m01762c" @@ -3127,8 +3126,8 @@ mets metsNoComp metBiGGID metKEGGID metHMDBID metChEBIID metPubChemID metLipidMa "MAM01822c" "MAM01822" "fe3" "C14819" "" "CHEBI:29034" "29936" "" "" "HC01847" "fe3" "MNXM196" "m01822c" "m01822c" "MAM01822e" "MAM01822" "fe3" "C14819" "" "CHEBI:29034" "29936" "" "" "HC01847" "fe3" "MNXM196" "m01822s" "m01822s" "MAM01823c" "MAM01823" "" "C00996" "" "CHEBI:18097" "" "" "" "HC00617" "HC00617" "MNXM1083" "m01823c" "m01823c" -"MAM01824c" "MAM01824" "ficytC" "C00125" "" "CHEBI:15991" "" "" "CE5919" "HC00123" "ficytC" "MNXM5749" "m01824c" "m01824c" -"MAM01824m" "MAM01824" "ficytC" "C00125" "" "CHEBI:15991" "" "" "CE5919" "HC00123" "ficytC" "MNXM5749" "m01824m" "m01824m" +"MAM01824c" "MAM01824" "ficytC" "C00125" "" "CHEBI:15991" "" "" "CE5919" "HC00123" "ficytC" "MNXM731952" "m01824c" "m01824c" +"MAM01824m" "MAM01824" "ficytC" "C00125" "" "CHEBI:15991" "" "" "CE5919" "HC00123" "ficytC" "MNXM731952" "m01824m" "m01824m" "MAM01825c" "MAM01825" "" "C00999" "" "" "" "" "" "HC00619" "HC00619" "MNXM1084" "m01825c" "m01825c" "MAM01826c" "MAM01826" "focytC" "C00126" "" "CHEBI:16928" "" "" "CE5918" "HC00124" "focytC" "MNXM5749" "m01826c" "m01826c" "MAM01826m" "MAM01826" "focytC" "C00126" "" "CHEBI:16928" "" "" "CE5918" "HC00124" "focytC" "MNXM5749" "m01826m" "m01826m" @@ -3413,7 +3412,7 @@ mets metsNoComp metBiGGID metKEGGID metHMDBID metChEBIID metPubChemID metLipidMa "MAM01993c" "MAM01993" "glygn3" "" "" "" "" "" "" "HC02137" "glygn3" "MNXM11715" "m01993c" "m01993c" "MAM01994c" "MAM01994" "" "" "" "" "" "" "" "HC02136" "HC02136" "MNXM164816" "m01994c" "m01994c" "MAM01995c" "MAM01995" "" "" "" "" "" "" "" "HC02132" "M01995" "MNXM12747" "m01995c" "m01995c" -"MAM01996c" "MAM01996" "ggn" "C01702" "" "" "" "" "" "HC02131" "ggn" "MNXM12747" "m01996c" "m01996c" +"MAM01996c" "MAM01996" "ggn" "C01702" "" "" "" "" "" "HC02131" "ggn" "MNXM93437" "m01996c" "m01996c" "MAM01997c" "MAM01997" "gcald" "C00266" "HMDB0003344" "CHEBI:17071" "756" "" "" "" "gcald" "MNXM349" "m01997c" "m01997c" "MAM01997m" "MAM01997" "gcald" "C00266" "HMDB0003344" "CHEBI:17071" "756" "" "" "" "gcald" "MNXM349" "m01997m" "m01997m" "MAM01998c" "MAM01998" "glyclt" "C00160" "HMDB0000115" "CHEBI:17497" "757" "" "" "" "glyclt" "MNXM222" "m01998c" "m01998c" @@ -3523,14 +3522,14 @@ mets metsNoComp metBiGGID metKEGGID metHMDBID metChEBIID metPubChemID metLipidMa "MAM02039x" "MAM02039" "h" "C00080" "" "CHEBI:24636" "1038" "" "" "HC00083" "h" "MNXM1" "m02039p" "m02039p" "MAM02039r" "MAM02039" "h" "C00080" "" "CHEBI:24636" "1038" "" "" "HC00083" "h" "MNXM1" "m02039r" "m02039r" "MAM02039e" "MAM02039" "h" "C00080" "" "CHEBI:24636" "1038" "" "" "HC00083" "h" "MNXM1" "m02039s" "m02039s" -"MAM02040c" "MAM02040" "h2o" "C00001" "HMDB0002111" "CHEBI:15377" "962" "LMST01040128" "" "HC00011" "h2o" "MNXM2" "m02040c" "m02040c" -"MAM02040g" "MAM02040" "h2o" "C00001" "HMDB0002111" "CHEBI:15377" "962" "LMST01040128" "" "HC00011" "h2o" "MNXM2" "m02040g" "m02040g" -"MAM02040l" "MAM02040" "h2o" "C00001" "HMDB0002111" "CHEBI:15377" "962" "LMST01040128" "" "HC00011" "h2o" "MNXM2" "m02040l" "m02040l" -"MAM02040m" "MAM02040" "h2o" "C00001" "HMDB0002111" "CHEBI:15377" "962" "LMST01040128" "" "HC00011" "h2o" "MNXM2" "m02040m" "m02040m" -"MAM02040n" "MAM02040" "h2o" "C00001" "HMDB0002111" "CHEBI:15377" "962" "LMST01040128" "" "HC00011" "h2o" "MNXM2" "m02040n" "m02040n" -"MAM02040x" "MAM02040" "h2o" "C00001" "HMDB0002111" "CHEBI:15377" "962" "LMST01040128" "" "HC00011" "h2o" "MNXM2" "m02040p" "m02040p" -"MAM02040r" "MAM02040" "h2o" "C00001" "HMDB0002111" "CHEBI:15377" "962" "LMST01040128" "" "HC00011" "h2o" "MNXM2" "m02040r" "m02040r" -"MAM02040e" "MAM02040" "h2o" "C00001" "HMDB0002111" "CHEBI:15377" "962" "LMST01040128" "" "HC00011" "h2o" "MNXM2" "m02040s" "m02040s" +"MAM02040c" "MAM02040" "h2o" "C00001" "HMDB0002111" "CHEBI:15377" "962" "LMST01040128" "" "HC00011" "h2o" "WATER" "m02040c" "m02040c" +"MAM02040g" "MAM02040" "h2o" "C00001" "HMDB0002111" "CHEBI:15377" "962" "LMST01040128" "" "HC00011" "h2o" "WATER" "m02040g" "m02040g" +"MAM02040l" "MAM02040" "h2o" "C00001" "HMDB0002111" "CHEBI:15377" "962" "LMST01040128" "" "HC00011" "h2o" "WATER" "m02040l" "m02040l" +"MAM02040m" "MAM02040" "h2o" "C00001" "HMDB0002111" "CHEBI:15377" "962" "LMST01040128" "" "HC00011" "h2o" "WATER" "m02040m" "m02040m" +"MAM02040n" "MAM02040" "h2o" "C00001" "HMDB0002111" "CHEBI:15377" "962" "LMST01040128" "" "HC00011" "h2o" "WATER" "m02040n" "m02040n" +"MAM02040x" "MAM02040" "h2o" "C00001" "HMDB0002111" "CHEBI:15377" "962" "LMST01040128" "" "HC00011" "h2o" "WATER" "m02040p" "m02040p" +"MAM02040r" "MAM02040" "h2o" "C00001" "HMDB0002111" "CHEBI:15377" "962" "LMST01040128" "" "HC00011" "h2o" "WATER" "m02040r" "m02040r" +"MAM02040e" "MAM02040" "h2o" "C00001" "HMDB0002111" "CHEBI:15377" "962" "LMST01040128" "" "HC00011" "h2o" "WATER" "m02040s" "m02040s" "MAM02041c" "MAM02041" "h2o2" "C00027" "HMDB0003125" "CHEBI:16240" "784" "" "" "HC00036" "h2o2" "MNXM22" "m02041c" "m02041c" "MAM02041l" "MAM02041" "h2o2" "C00027" "HMDB0003125" "CHEBI:16240" "784" "" "" "HC00036" "h2o2" "MNXM22" "m02041l" "m02041l" "MAM02041m" "MAM02041" "h2o2" "C00027" "HMDB0003125" "CHEBI:16240" "784" "" "" "HC00036" "h2o2" "MNXM22" "m02041m" "m02041m" @@ -3671,7 +3670,7 @@ mets metsNoComp metBiGGID metKEGGID metHMDBID metChEBIID metPubChemID metLipidMa "MAM02119m" "MAM02119" "6thf" "" "" "" "169691" "" "" "" "6thf" "MNXM3616" "m02119m" "m02119m" "MAM02119e" "MAM02119" "6thf" "" "" "" "169691" "" "" "" "6thf" "MNXM3616" "m02119s" "m02119s" "MAM02120c" "MAM02120" "" "C01585" "HMDB0000535" "CHEBI:17120;CHEBI:30776" "" "LMFA01010006" "" "" "caproic" "MNXM1653" "m02120c" "m02120c" -"MAM02120e" "MAM02120" "" "C01585" "HMDB0000535" "CHEBI:17120;CHEBI:30776" "" "LMFA01010006" "" "" "caproic" "MNXM1653" "m02120s" "m02120s" +"MAM02120e" "MAM02120" "hxa" "C01585" "HMDB0000535" "CHEBI:17120;CHEBI:30776" "" "LMFA01010006" "" "" "caproic;hxa" "MNXM1653" "m02120s" "hxa_s;m02120s" "MAM02121c" "MAM02121" "" "C05749" "" "" "" "" "" "HC01592" "HC01592" "MNXM23683" "m02121c" "m02121c" "MAM02122c" "MAM02122" "" "C05270" "HMDB0002845" "CHEBI:27540" "440611" "LMFA07050001" "" "HC01409" "hxcoa" "MNXM162502;MNXM553" "m02122c" "m02122c" "MAM02122m" "MAM02122" "" "C05270" "HMDB0002845" "CHEBI:27540" "440611" "LMFA07050001" "" "HC01409" "hxcoa" "MNXM162502;MNXM553" "m02122m" "m02122m" @@ -3708,7 +3707,7 @@ mets metsNoComp metBiGGID metKEGGID metHMDBID metChEBIID metPubChemID metLipidMa "MAM02141e" "MAM02141" "ha" "C00518" "" "CHEBI:16336" "24759" "" "" "" "ha" "MNXM18575" "m02141s" "m02141s" "MAM02142m" "MAM02142" "3hpp" "C01013" "HMDB0000700" "CHEBI:33404" "68152" "" "" "HC00625" "3hpp" "MNXM872" "m02142m" "m02142m" "MAM02143c" "MAM02143" "" "C13645" "" "CHEBI:47266" "" "" "" "" "M02143" "MNXM833" "m02143c" "m02143c" -"MAM02144c" "MAM02144" "" "C01327" "" "" "" "" "" "" "M02144" "MNXM43" "m02144c" "m02144c" +"MAM02144c" "MAM02144" "" "C01327" "" "" "" "" "" "" "M02144" "MNXM56769" "m02144c" "m02144c" "MAM02145c" "MAM02145" "cyan" "C01326" "" "CHEBI:18407" "768" "" "" "" "cyan" "MNXM254" "m02145c" "m02145c" "MAM02145m" "MAM02145" "cyan" "C01326" "" "CHEBI:18407" "768" "" "" "" "cyan" "MNXM254" "m02145m" "m02145m" "MAM02145e" "MAM02145" "cyan" "C01326" "" "CHEBI:18407" "768" "" "" "" "cyan" "MNXM254" "m02145s" "m02145s" @@ -4142,7 +4141,7 @@ mets metsNoComp metBiGGID metKEGGID metHMDBID metChEBIID metPubChemID metLipidMa "MAM02422c" "MAM02422" "lum3" "" "HMDB0006505" "" "111049" "" "" "" "lum3" "MNXM19109" "m02422c" "m02422c" "MAM02423c" "MAM02423" "" "C02554" "" "CHEBI:29164" "" "" "" "" "M02423" "MNXM90110" "m02423c" "m02423c" "MAM02424c" "MAM02424" "xylnt" "C05411" "" "CHEBI:48092" "6971043" "" "" "" "xylnt" "MNXM169422;MNXM8831" "m02424c" "m02424c" -"MAM02425c" "MAM02425" "xylu__L" "C00312" "HMDB0000751" "CHEBI:17399" "22253" "" "" "HC00267" "xylu_L" "MNXM597" "m02425c" "m02425c" +"MAM02425c" "MAM02425" "xylu__L" "C00312" "HMDB0000751" "CHEBI:17399" "22253" "" "" "HC00267" "xylu_L" "MNXM727819" "m02425c" "m02425c" "MAM02426c" "MAM02426" "lys__L" "C00047" "HMDB0000182" "CHEBI:18019" "5962" "" "" "HC00053" "lys_L" "MNXM78" "m02426c" "m02426c" "MAM02426l" "MAM02426" "lys__L" "C00047" "HMDB0000182" "CHEBI:18019" "5962" "" "" "HC00053" "lys_L" "MNXM78" "m02426l" "m02426l" "MAM02426m" "MAM02426" "lys__L" "C00047" "HMDB0000182" "CHEBI:18019" "5962" "" "" "HC00053" "lys_L" "MNXM78" "m02426m" "m02426m" @@ -4355,7 +4354,7 @@ mets metsNoComp metBiGGID metKEGGID metHMDBID metChEBIID metPubChemID metLipidMa "MAM02547c" "MAM02547" "aprut" "C02714" "HMDB0002064" "CHEBI:17768" "122356" "" "" "" "aprut" "MNXM1153" "m02547c" "m02547c" "MAM02548c" "MAM02548" "" "" "" "" "" "" "CE2088" "" "CE2088" "MNXM168488" "m02548c" "m02548c" "MAM02549c" "MAM02549" "Nacsertn" "C00978" "" "CHEBI:17697" "903" "" "" "" "Nacsertn" "MNXM164995;MNXM780" "m02549c" "m02549c" -"MAM02550c" "MAM02550" "" "" "" "" "" "" "CE5868" "" "CE5868" "MNXM42" "m02550c" "m02550c" +"MAM02550c" "MAM02550" "" "" "" "" "" "" "CE5868" "" "CE5868" "MNXM725868" "m02550c" "m02550c" "MAM02551c" "MAM02551" "" "" "" "" "14181658" "" "CE5867" "" "CE5867" "MNXM163855" "m02551c" "m02551c" "MAM02552c" "MAM02552" "nad" "C00003" "HMDB0000902" "CHEBI:15846" "5893" "" "" "HC00013" "nad" "MNXM8" "m02552c" "m02552c" "MAM02552m" "MAM02552" "nad" "C00003" "HMDB0000902" "CHEBI:15846" "5893" "" "" "HC00013" "nad" "MNXM8" "m02552m" "m02552m" @@ -5523,7 +5522,7 @@ mets metsNoComp metBiGGID metKEGGID metHMDBID metChEBIID metPubChemID metLipidMa "MAM03140c" "MAM03140" "" "" "" "" "" "" "" "" "M03140" "" "m03140c" "m03140c" "MAM03143c" "MAM03143" "" "" "" "" "" "" "" "" "M03143" "" "m03143c" "m03143c" "MAM01004m" "MAM01004" "34hpl" "C03672" "HMDB0000755" "CHEBI:17385" "9378" "" "" "" "34hpl" "MNXM114141" "" "m01004m" -"MAM03226m" "MAM03226" "3hibutcoa" "C04047" "" "CHEBI:15481" "" "" "" "" "3hibutcoa" "MNXM446" "" "3hibutcoa_m" +"MAM03226m" "MAM03226" "3hibutcoa" "C04047" "" "CHEBI:15481" "" "" "" "" "3hibutcoa" "MNXM1105906" "" "3hibutcoa_m" "MAM00799c" "MAM00799" "3hpcoa" "C05668" "" "CHEBI:27762" "440753" "" "" "HC01557" "3hpcoa" "MNXM1263" "" "m00799c" "MAM02142c" "MAM02142" "3hpp" "C01013" "HMDB0000700" "CHEBI:33404" "68152" "" "" "HC00625" "3hpp" "MNXM872" "" "m02142c" "MAM00900c" "MAM00900" "msa" "C00222" "" "CHEBI:17960" "868" "" "" "HC00203" "msa" "MNXM244" "" "m00900c" @@ -5942,7 +5941,7 @@ mets metsNoComp metBiGGID metKEGGID metHMDBID metChEBIID metPubChemID metLipidMa "MAM03372c" "MAM03372" "CE5839" "" "" "" "" "" "CE5839" "" "CE5839" "MNXM166480" "" "CE5839_c" "MAM03373c" "MAM03373" "CE5840" "" "" "" "" "" "CE5840" "" "CE5840" "MNXM165601" "" "CE5840_c" "MAM00766r" "MAM00766" "" "" "" "" "9943542" "" "CE1925" "" "CE1925" "MNXM163170" "" "m00766r" -"MAM01321r" "MAM01321" "" "" "" "" "" "" "CE5853" "" "CE5853" "MNXM15963" "" "m01321r" +"MAM01321r" "MAM01321" "" "" "" "" "" "" "CE5853" "" "CE5853" "MNXM739689" "" "m01321r" "MAM01923r" "MAM01923" "" "" "" "" "133098" "" "CE1926" "" "CE1926" "MNXM163392" "" "m01923r" "MAM01924r" "MAM01924" "" "" "" "" "" "" "CE5854" "" "CE5854" "MNXM163393" "" "m01924r" "MAM01675n" "MAM01675" "dsmsterol" "C01802" "HMDB0002719" "CHEBI:17737" "439577" "LMST01010016" "" "HC00847" "dsmsterol" "MNXM162959;MNXM695" "" "m01675n" @@ -5953,7 +5952,7 @@ mets metsNoComp metBiGGID metKEGGID metHMDBID metChEBIID metPubChemID metLipidMa "MAM03374c" "MAM03374" "CE5865" "" "" "" "40489070" "" "CE5865" "" "CE5865" "MNXM127276" "" "CE5865_c" "MAM03375c" "MAM03375" "CE5866" "" "" "" "6992388" "" "CE5866" "" "CE5866" "MNXM15786" "" "CE5866_c" "MAM02551e" "MAM02551" "" "" "" "" "14181658" "" "CE5867" "" "CE5867" "MNXM163855" "" "m02551s" -"MAM02550e" "MAM02550" "" "" "" "" "" "" "CE5868" "" "CE5868" "MNXM42" "" "m02550s" +"MAM02550e" "MAM02550" "" "" "" "" "" "" "CE5868" "" "CE5868" "MNXM725868" "" "m02550s" "MAM02429e" "MAM02429" "" "" "" "" "" "" "CE5869" "" "CE5869" "MNXM19120" "" "m02429s" "MAM03356c" "MAM03356" "CE5016" "" "" "" "" "" "CE5016" "" "CE5016" "MNXM165531" "" "CE5016_c" "MAM03323c" "MAM03323" "C06948" "C06948" "" "" "3016" "" "" "" "C06948" "MNXM50391" "" "C06948_c" @@ -6123,9 +6122,9 @@ mets metsNoComp metBiGGID metKEGGID metHMDBID metChEBIID metPubChemID metLipidMa "MAM00838c" "MAM00838" "" "" "" "" "" "" "CE5337" "" "CE5337" "MNXM162903" "" "m00838c" "MAM00751r" "MAM00751" "" "C01301" "" "CHEBI:48940" "" "" "CE4872" "" "CE4872" "MNXM867" "" "m00751r" "MAM00766e" "MAM00766" "" "" "" "" "9943542" "" "CE1925" "" "CE1925" "MNXM163170" "" "m00766s" -"MAM01321e" "MAM01321" "" "" "" "" "" "" "CE5853" "" "CE5853" "MNXM15963" "" "m01321s" +"MAM01321e" "MAM01321" "" "" "" "" "" "" "CE5853" "" "CE5853" "MNXM739689" "" "m01321s" "MAM00766l" "MAM00766" "" "" "" "" "9943542" "" "CE1925" "" "CE1925" "MNXM163170" "" "m00766l" -"MAM01321l" "MAM01321" "" "" "" "" "" "" "CE5853" "" "CE5853" "MNXM15963" "" "m01321l" +"MAM01321l" "MAM01321" "" "" "" "" "" "" "CE5853" "" "CE5853" "MNXM739689" "" "m01321l" "MAM02796m" "MAM02796" "" "C05957" "HMDB0002710" "CHEBI:27485" "5280884" "LMFA03010019" "" "" "C05957" "MNXM7704" "" "m02796m" "MAM01662m" "MAM01662" "" "" "" "" "114678" "" "CE4876" "" "CE4876" "MNXM6638" "" "m01662m" "MAM00252r" "MAM00252" "" "" "" "" "" "" "CE4988" "" "CE4988" "MNXM162617" "" "m00252r" @@ -6692,7 +6691,6 @@ mets metsNoComp metBiGGID metKEGGID metHMDBID metChEBIID metPubChemID metLipidMa "MAM03814c" "MAM03814" "pchollinl_hs" "" "" "CHEBI:28733" "" "" "" "" "pchollinl_hs" "" "" "pchollinl_hs_c" "MAM03856c" "MAM03856" "pelinl_hs" "" "" "CHEBI:83058" "" "" "" "" "pelinl_hs" "" "" "pelinl_hs_c" "MAM03569c" "MAM03569" "eidi1114ac" "C16525" "HMDB0005060" "CHEBI:603631" "6439848" "" "" "" "eidi1114ac" "" "" "eidi1114ac_c" -"MAM03684c" "MAM03684" "hxa" "" "" "CHEBI:17120" "" "" "" "" "hxa" "MNXM1653" "" "hxa_c" "MAM03976c" "MAM03976" "tetdeca511ac" "" "" "" "" "" "" "" "tetdeca511ac" "" "" "tetdeca511ac_c" "MAM03619c" "MAM03619" "glyc2p" "" "" "CHEBI:58083" "" "" "" "" "glyc2p" "MNXM2527" "" "glyc2p_c" "MAM03401c" "MAM03401" "aclys" "" "" "" "" "" "" "" "aclys" "" "" "aclys_c" @@ -6836,8 +6834,6 @@ mets metsNoComp metBiGGID metKEGGID metHMDBID metChEBIID metPubChemID metLipidMa "MAM03619e" "MAM03619" "glyc2p" "" "" "" "" "" "" "" "glyc2p" "MNXM2527" "" "glyc2p_s" "MAM01998e" "MAM01998" "glyclt" "C00160" "HMDB0000115" "CHEBI:17497" "757" "" "" "" "glyclt" "MNXM222" "" "m01998s" "MAM03232e" "MAM03232" "3hpppn" "" "" "" "" "" "" "" "3hpppn" "MNXM1634" "" "3hpppn_s" -"MAM03684m" "MAM03684" "hxa" "" "" "" "" "" "" "" "hxa" "MNXM1653" "" "hxa_m" -"MAM03684x" "MAM03684" "hxa" "" "" "" "" "" "" "" "hxa" "MNXM1653" "" "hxa_p" "MAM02169e" "MAM02169" "ind3ac" "C00954" "HMDB0000197" "CHEBI:16411" "802" "" "" "" "ind3ac" "MNXM383" "" "m02169s" "MAM02350e" "MAM02350" "Lcyst" "C00506" "HMDB0002757" "CHEBI:21260" "25701" "" "" "" "Lcyst" "MNXM713" "" "m02350s" "MAM02413c" "MAM02413" "Lpipecol" "C00408" "HMDB0000716" "CHEBI:30913" "439227" "" "" "" "Lpipecol" "MNXM684" "" "m02413c" @@ -7372,7 +7368,6 @@ mets metsNoComp metBiGGID metKEGGID metHMDBID metChEBIID metPubChemID metLipidMa "MAM04078c" "MAM04078" "" "" "" "" "" "" "" "" "xolest204_hs" "" "" "xolest204_hs_c" "MAM04080c" "MAM04080" "xolest226_hs" "" "" "" "" "" "" "" "xolest226_hs" "" "" "xolest226_hs_c" "MAM02908e" "MAM02908" "sphmyln_hs" "C00550" "" "CHEBI:17636" "" "LMSP03010000" "" "HC02007" "sphmyln_hs" "MNXM5930" "" "m02908s" -"MAM03684e" "MAM03684" "hxa" "" "" "" "" "" "" "" "hxa" "MNXM1653" "" "hxa_s" "MAM01954c" "MAM01954" "gncore1" "" "" "" "" "" "" "" "gncore1" "MNXM18091" "" "m01954c" "MAM01954e" "MAM01954" "gncore1" "" "" "" "" "" "" "" "gncore1" "MNXM18091" "" "m01954s" "MAM03394c" "MAM03394" "Lhcystin" "" "" "" "" "" "" "" "Lhcystin" "" "" "Lhcystin_c" @@ -7630,8 +7625,8 @@ mets metsNoComp metBiGGID metKEGGID metHMDBID metChEBIID metPubChemID metLipidMa "MAM02756e" "MAM02756" "ppbng" "C00931" "HMDB0000245" "CHEBI:17381" "1021" "" "" "HC00588" "ppbng" "MNXM554" "" "m02756s" "MAM02771e" "MAM02771" "12ppd__R" "C00583" "HMDB0001881" "CHEBI:16997" "1030" "" "" "" "12ppd_R" "MNXM1118;MNXM1255;MNXM90191" "" "m02771s" "MAM02870e" "MAM02870" "ametam" "C01137" "HMDB0000988" "CHEBI:15625" "439415" "" "" "HC00683" "ametam" "MNXM321" "" "m02870s" -"MAM02425e" "MAM02425" "xylu__L" "C00312" "HMDB0000751" "CHEBI:17399" "22253" "" "" "HC00267" "xylu_L" "MNXM597" "" "m02425s" -"MAM01759e" "MAM01759" "xylu__D" "C00310" "HMDB0001644" "CHEBI:17140" "5289590" "" "" "" "xylu_D" "MNXM597" "" "m01759s" +"MAM02425e" "MAM02425" "xylu__L" "C00312" "HMDB0000751" "CHEBI:17399" "22253" "" "" "HC00267" "xylu_L" "MNXM727819" "" "m02425s" +"MAM01759e" "MAM01759" "xylu__D" "C00310" "HMDB0001644" "CHEBI:17140" "5289590" "" "" "" "xylu_D" "MNXM731281" "" "m01759s" "MAM02441e" "MAM02441" "" "C19440" "HMDB0006112" "CHEBI:566274" "10964" "" "CE0737" "" "CE0737" "MNXM61004" "" "m02441s" "MAM02166e" "MAM02166" "im4ac" "C02835" "HMDB0002024" "CHEBI:16974" "96215" "" "" "" "im4ac" "MNXM1330" "" "m02166s" "MAM01332e" "MAM01332" "aact" "C01888" "" "" "215" "" "" "" "aact" "MNXM1106" "" "m01332s" diff --git a/model/reactions.tsv b/model/reactions.tsv index dc2c1b61..f524dbba 100644 --- a/model/reactions.tsv +++ b/model/reactions.tsv @@ -5132,7 +5132,7 @@ rxns rxnKEGGID rxnBiGGID rxnEHMNID rxnHepatoNET1ID rxnREACTOMEID rxnRecon3DID rx "MAR00019" "" "" "" "" "" "HMR_0019" "" "HMR_0019" "RCR40176" "" 0 "" "" "HMR_0019" "MAR00155" "" "" "" "" "" "HMR_0155" "" "HMR_0155" "RCR40028" "4.C.1.1.5;4.C.1.1.8" 0 "" "" "HMR_0155" "MAR00164" "" "" "" "" "" "HMR_0164" "" "HMR_0164" "RCR40177" "4.C.1.1.5;4.C.1.1.8" 0 "" "" "HMR_0164" -"MAR00167" "" "" "" "" "" "HMR_0167" "" "HMR_0167" "RCR40350" "4.C.1.1.5;4.C.1.1.8" 0 "" "" "HMR_0167" +"MAR00167" "" "HXAt3" "" "" "" "HMR_0167;HXAt3" "" "HMR_0167" "RCR40350" "4.C.1.1.5;4.C.1.1.8" 0 "" "" "HMR_0167;HXAt3" "MAR00170" "" "" "" "" "" "HMR_0170" "" "HMR_0170" "RCR40351" "4.C.1.1.5;4.C.1.1.8" 0 "" "" "HMR_0170" "MAR00173" "" "" "" "" "" "OCTAt;OCTAte" "" "HMR_0173" "RCR40178" "4.C.1.1.5;4.C.1.1.8" 0 "" "" "HMR_0173" "MAR00176" "" "" "" "" "" "HMR_0176" "" "HMR_0176" "RCR40352" "4.C.1.1.5;4.C.1.1.8" 0 "" "" "HMR_0176" @@ -7655,7 +7655,7 @@ rxns rxnKEGGID rxnBiGGID rxnEHMNID rxnHepatoNET1ID rxnREACTOMEID rxnRecon3DID rx "MAR09808" "" "" "" "" "" "EX_ppa[e]" "" "HMR_9808" "RCR30309" "" 0 "" "" "HMR_9808" "MAR09809" "" "" "" "" "" "EX_but[e]" "" "HMR_9809" "RCR30041" "" 0 "" "" "HMR_9809" "MAR09810" "" "" "" "" "" "EX_M03134[e]" "" "HMR_9810" "RCR30012" "" 0 "" "" "HMR_9810" -"MAR09811" "" "" "" "" "" "EX_caproic[e]" "" "HMR_9811" "RCR30310" "" 0 "" "" "HMR_9811" +"MAR09811" "" "EX_hxa_e" "" "" "" "EX_caproic[e];EX_hxa[e]" "MNXR98664" "HMR_9811" "RCR30310" "" 0 "" "" "EX_hxa[e];HMR_9811" "MAR09812" "" "" "" "" "" "EX_M02108[e]" "" "HMR_9812" "RCR30311" "" 0 "" "" "HMR_9812" "MAR09813" "" "" "" "" "" "EX_octa[e]" "" "HMR_9813" "RCR30142" "" 0 "" "" "HMR_9813" "MAR09814" "" "" "" "" "" "EX_C01601[e]" "" "HMR_9814" "RCR30312" "" 0 "" "" "HMR_9814" @@ -9846,7 +9846,6 @@ rxns rxnKEGGID rxnBiGGID rxnEHMNID rxnHepatoNET1ID rxnREACTOMEID rxnRecon3DID rx "MAR09946" "" "" "" "" "" "XOLEST204CEH" "" "" "" "" 0 "" "" "XOLEST204CEH" "MAR09947" "" "XOLEST226CEH" "" "" "" "XOLEST226CEH" "" "" "" "" 0 "" "" "XOLEST226CEH" "MAR09948" "" "CE4843HYDc" "" "" "" "CE4843HYDc" "" "" "" "" 0 "" "" "CE4843HYDc" -"MAR09949" "" "FACOAE60" "" "" "" "HXCOAc" "MNXR99139" "" "" "" 0 "" "" "HXCOAc" "MAR09950" "" "TETDECA511ACc" "" "" "" "TETDECA511ACc" "" "" "" "" 0 "" "" "TETDECA511ACc" "MAR09951" "" "GPDDACHOL" "" "" "" "GPDDACHOL" "" "" "" "" 0 "" "" "GPDDACHOL" "MAR09952" "" "ACLYSHYc" "" "" "" "ACLYSHYc" "" "" "" "" 0 "" "" "ACLYSHYc" @@ -11076,8 +11075,6 @@ rxns rxnKEGGID rxnBiGGID rxnEHMNID rxnHepatoNET1ID rxnREACTOMEID rxnRecon3DID rx "MAR11289" "" "PHEACGLYtm" "" "" "" "PHEACGLYtm" "MNXR157011" "" "" "" 0 "" "" "PHEACGLYtm" "MAR11290" "" "HXAt1" "" "" "" "HXAt1" "" "" "" "" 0 "" "" "HXAt1" "MAR11291" "" "HXAt2" "" "" "" "HXAt2" "" "" "" "" 0 "" "" "HXAt2" -"MAR11292" "" "HXAt3" "" "" "" "HXAt3" "" "" "" "" 0 "" "" "HXAt3" -"MAR11293" "" "EX_hxa_e" "" "" "" "EX_hxa[e]" "MNXR98664" "" "" "" 0 "" "" "EX_hxa[e]" "MAR11294" "" "TTDCEAc" "" "" "" "TTDCEAc" "" "" "" "" 0 "" "" "TTDCEAc" "MAR11295" "" "PACCOALm" "" "" "" "PACCOALm" "" "" "" "" 0 "" "" "PACCOALm" "MAR11296" "" "PACALDtm" "" "" "" "PACALDtm" "MNXR102312" "" "" "" 0 "" "" "PACALDtm" @@ -11326,7 +11323,7 @@ rxns rxnKEGGID rxnBiGGID rxnEHMNID rxnHepatoNET1ID rxnREACTOMEID rxnRecon3DID rx "MAR11541" "" "3OHSUBACtxc" "" "" "" "3OHSUBACtxc" "" "" "" "" 0 "" "" "3OHSUBACtxc" "MAR11542" "" "3OHSUBACte" "" "" "" "3OHSUBACte" "" "" "" "" 0 "" "" "3OHSUBACte" "MAR11543" "" "EX_3ohsubac_e" "" "" "" "EX_3ohsubac[e]" "" "" "" "" 0 "" "" "EX_3ohsubac[e]" -"MAR11544" "" "CAPROICc" "" "" "" "CAPROICc" "" "" "" "" 0 "" "" "CAPROICc" +"MAR11544" "" "CAPROICc;FACOAE60" "" "" "" "CAPROICc;HXCOAc" "MNXR99139" "" "" "" 0 "" "" "CAPROICc;HXCOAc" "MAR11545" "" "5OHHEXAc" "" "" "" "5OHHEXAc" "" "" "" "" 0 "" "" "5OHHEXAc" "MAR11546" "" "5OHHEXAte" "" "" "" "5OHHEXAte" "" "" "" "" 0 "" "" "5OHHEXAte" "MAR11547" "" "EX_5ohhexa_e" "" "" "" "EX_5ohhexa[e]" "" "" "" "" 0 "" "" "EX_5ohhexa[e]"