diff --git a/.github/ISSUE_TEMPLATE.md b/.github/ISSUE_TEMPLATE.md index 60e55f4..1797a08 100644 --- a/.github/ISSUE_TEMPLATE.md +++ b/.github/ISSUE_TEMPLATE.md @@ -7,7 +7,7 @@ #### Current feature/value/output: -*How the reaction/metabolite/gene/simulation actually looks in the `master` branch. PLEASE DELETE THIS LINE.* +*How the reaction/metabolite/gene/simulation actually looks in the `main` branch. PLEASE DELETE THIS LINE.* #### Reproducing these results: @@ -17,9 +17,7 @@ ``` **I hereby confirm that I have:** -- [ ] Tested my code with [all requirements](https://github.com/SysBioChalmers/yeast-GEM#required-software---user) for running the model -- [ ] Done this analysis in the `master` branch of the repository +- [ ] Done this analysis in the `main` branch of the repository - [ ] Checked that a similar issue does not exist already -- [ ] If needed, asked first in the [Gitter chat room](https://gitter.im/SysBioChalmers/yeast-GEM) about the issue *Note: replace [ ] with [X] to check the box. PLEASE DELETE THIS LINE* diff --git a/.github/PULL_REQUEST_TEMPLATE.md b/.github/PULL_REQUEST_TEMPLATE.md index 5c2d4ab..d476a25 100644 --- a/.github/PULL_REQUEST_TEMPLATE.md +++ b/.github/PULL_REQUEST_TEMPLATE.md @@ -4,6 +4,6 @@ **I hereby confirm that I have:** - [ ] Tested my code on my own computer for running the model -- [ ] Selected `devel` as a target branch +- [ ] Selected `develop` as a target branch *Note: replace [ ] with [X] to check the box. PLEASE DELETE THIS LINE* diff --git a/README.md b/README.md index 3b3c2eb..e4eac1d 100644 --- a/README.md +++ b/README.md @@ -52,7 +52,7 @@ This repository contains the latest version of Fruitfly-GEM, a fruit fly genome- ### Installation Instructions -* Clone the [master branch](https://github.com/SysBioChalmers/Fruitfly-GEM/tree/master) of this repository, or [download the latest release](https://github.com/SysBioChalmers/Fruitfly-GEM/releases/latest). +* Clone the [main branch](https://github.com/SysBioChalmers/Fruitfly-GEM/tree/main) of this repository, or [download the latest release](https://github.com/SysBioChalmers/Fruitfly-GEM/releases/latest). * Add the directory to your MATLAB path (instructions [here](https://se.mathworks.com/help/matlab/ref/addpath.html?requestedDomain=www.mathworks.com)). @@ -60,7 +60,7 @@ This repository contains the latest version of Fruitfly-GEM, a fruit fly genome- #### Loading/saving the model -`Fruitfly-GEM.mat` (Recommended if on `master` branch) +`Fruitfly-GEM.mat` (Recommended if on `main` branch) * Load and save using the built-in MATLAB `load()` and `save()` functions. `Fruitfly-GEM.xml` (SBML format)