Skip to content
New issue

Have a question about this project? Sign up for a free GitHub account to open an issue and contact its maintainers and the community.

Sign up for GitHub

By clicking “Sign up for GitHub”, you agree to our terms of service and privacy statement. We’ll occasionally send you account related emails.

Already on GitHub? Sign in to your account

Jump to bottom

Change example workflow from hello world to file processing #1

Open
georgiesamaha opened this issue Oct 23, 2023 · 0 comments
Open

Change example workflow from hello world to file processing #1

georgiesamaha opened this issue Oct 23, 2023 · 0 comments
Assignees
@georgiesamaha
Labels
enhancement New feature or request

Comments

@georgiesamaha
Copy link
Member

georgiesamaha commented Oct 23, 2023 •
edited
Loading

Workflow structure, data management is very different forr handling actual files compared with manipulating text strings. A working example with input files would allow:

  • Demonstration how to enable singularity/docker
  • Inputting a file from path
  • Outputting >1 file
  • Use of publishDir to output results to directory

Identified while testing Sydney-Informatics-Hub/fastqc-nf#5
@georgiesamaha georgiesamaha self-assigned this Oct 23, 2023
@georgiesamaha georgiesamaha added the enhancement New feature or request label Oct 23, 2023
Sign up for free to join this conversation on GitHub. Already have an account? Sign in to comment
Assignees

@georgiesamaha georgiesamaha

Labels
enhancement New feature or request
Projects
None yet
Milestone
No milestone
Development

No branches or pull requests
1 participant
@georgiesamaha