diff --git a/README.md b/README.md index ac9c65c7..1377b35d 100644 --- a/README.md +++ b/README.md @@ -4,15 +4,13 @@ [![pypi-badge](https://img.shields.io/pypi/v/omicverse)](https://pypi.org/project/omicverse) [![Documentation Status](https://readthedocs.org/projects/omicverse/badge/?version=latest)](https://omicverse.readthedocs.io/en/latest/?badge=latest) [![pypiDownloads](https://static.pepy.tech/badge/omicverse)](https://pepy.tech/project/omicverse) [![condaDownloads](https://img.shields.io/conda/dn/conda-forge/omicverse?logo=Anaconda)](https://anaconda.org/conda-forge/omicverse) [![License:GPL](https://img.shields.io/badge/license-GNU-blue)](https://img.shields.io/apm/l/vim-mode) [![scverse](https://img.shields.io/badge/scverse-ecosystem-blue.svg?labelColor=yellow)](https://scverse.org/) [![Pytest](https://github.com/Starlitnightly/omicverse/workflows/py38|py39/badge.svg)](https://github.com/Starlitnightly/omicverse/) -OmicVerse is the fundamental package for multi omics included bulk ,single cell and spatial RNA-seq analysis with Python. For more information, please read our paper: [OmicVerse: A single pipeline for exploring the entire transcriptome universe](https://www.biorxiv.org/content/10.1101/2023.06.06.543913v2) +**`OmicVerse`** is the fundamental package for multi omics included **bulk ,single cell and spatial RNA-seq** analysis with Python. For more information, please read our paper: [OmicVerse: A single pipeline for exploring the entire transcriptome universe](https://www.biorxiv.org/content/10.1101/2023.06.06.543913v2) -> \[!IMPORTANT] +> [!IMPORTANT] > > **Star Us**, You will receive all release notifications from GitHub without any delay \~ ⭐️ - -> \[!NOTE] > -> If you like **OmicVerse** and want to support our mission, please consider making a [donation](https://afdian.net/a/starlitnightly) to support our efforts. +> If you like **OmicVerse** and want to support our mission, please consider making a [💗donation](https://afdian.net/a/starlitnightly) to support our efforts.
Star History @@ -28,9 +26,10 @@ OmicVerse is the fundamental package for multi omics included bulk ,single cell ## `1` [Introduction][docs-feat-provider] -The original name of the omicverse was [Pyomic](https://pypi.org/project/Pyomic/), but we wanted to address a whole universe of transcriptomics, so we changed the name to OmicVerse, it aimed to solve all task in RNA-seq. +The original name of the omicverse was [Pyomic](https://pypi.org/project/Pyomic/), but we wanted to address a whole universe of transcriptomics, so we changed the name to **`OmicVerse`**, it aimed to solve all task in RNA-seq. -BulkTrajBlend algorithm in OmicVerse that combines Beta-Variational AutoEncoder for deconvolution and graph neural networks for overlapping community discovery to effectively interpolate and restore the continuity of “interrupted” cells in the original scRNA-seq data. +> [!NOTE] +> **BulkTrajBlend** algorithm in OmicVerse that combines Beta-Variational AutoEncoder for deconvolution and graph neural networks for overlapping community discovery to effectively interpolate and restore the continuity of **"omission"** cells in the original scRNA-seq data. ![omicverse-light](omicverse_guide/docs/img/omicverse.png#gh-light-mode-only) ![omicverse-dark](omicverse_guide/docs/img/omicverse_dark.png#gh-dark-mode-only) @@ -144,16 +143,26 @@ The table contains the tools have been published - Zehua Zeng ([starlitnightly@163.com](mailto:starlitnightly@163.com) or [zehuazeng@xs.ustb.edu.cn](mailto:zehuazeng@xs.ustb.edu.cn)) - Lei Hu ([hulei@westlake.edu.cn](mailto:hulei@westlake.edu.cn)) -## `6` [Developer Guild and Acknowledgements](#) +## `6` [Developer Guild and Contributing](#) If you would like to contribute to omicverse, please refer to our [developer documentation](https://omicverse.readthedocs.io/en/latest/Developer_guild/). + + + + +
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+ + > [!IMPORTANT] > We would like to thank the following WeChat Official Accounts for promoting Omicverse. +>

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## `7` [Other](#)