diff --git a/README.md b/README.md index 41bc783c..27b2ee26 100644 --- a/README.md +++ b/README.md @@ -4,7 +4,7 @@ [![pypi-badge](https://img.shields.io/pypi/v/omicverse)](https://pypi.org/project/omicverse) [![Documentation Status](https://readthedocs.org/projects/omicverse/badge/?version=latest)](https://omicverse.readthedocs.io/en/latest/?badge=latest) [![pypiDownloads](https://static.pepy.tech/badge/omicverse)](https://pepy.tech/project/omicverse) [![condaDownloads](https://img.shields.io/conda/dn/conda-forge/omicverse?logo=Anaconda)](https://anaconda.org/conda-forge/omicverse) [![License:GPL](https://img.shields.io/badge/license-GNU-blue)](https://img.shields.io/apm/l/vim-mode) [![scverse](https://img.shields.io/badge/scverse-ecosystem-blue.svg?labelColor=yellow)](https://scverse.org/) [![Pytest](https://github.com/Starlitnightly/omicverse/workflows/py38|py39/badge.svg)](https://github.com/Starlitnightly/omicverse/) -**`OmicVerse`** is the fundamental package for multi omics included **bulk ,single cell and spatial RNA-seq** analysis with Python. For more information, please read our paper: [OmicVerse: A single pipeline for exploring the entire transcriptome universe](https://www.biorxiv.org/content/10.1101/2023.06.06.543913v2) +**`OmicVerse`** is the fundamental package for multi omics included **bulk ,single cell and spatial RNA-seq** analysis with Python. For more information, please read our paper: [OmicVerse: A single pipeline for exploring the entire transcriptome universe](https://www.nature.com/articles/s41467-024-50194-3) > [!IMPORTANT] > @@ -148,7 +148,7 @@ The table contains the tools have been published ## `5` [Contact](#) -- Zehua Zeng ([starlitnightly@163.com](mailto:starlitnightly@163.com) or [zehuazeng@xs.ustb.edu.cn](mailto:zehuazeng@xs.ustb.edu.cn)) +- Zehua Zeng ([starlitnightly@gmail.com](mailto:starlitnightly@gmail.com) or [zehuazeng@xs.ustb.edu.cn](mailto:zehuazeng@xs.ustb.edu.cn)) - Lei Hu ([hulei@westlake.edu.cn](mailto:hulei@westlake.edu.cn)) ## `6` [Developer Guild and Contributing](#) @@ -169,10 +169,18 @@ If you would like to contribute to omicverse, please refer to our [developer doc >

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+## `7` [Citation] +If you use `omicverse` in your work, please cite the `omicverse` publication as follows: + +> **OmicVerse: a framework for bridging and deepening insights across bulk and single-cell sequencing** +> +> Zeng, Z., Ma, Y., Hu, L. et al. +> +> _Nature Communication_ 2024 Jul 17. doi: [10.1038/s41467-024-50194-3](https://doi.org/10.1038/s41467-024-50194-3). -## `7` [Other](#) +## `8` [Other](#) If you would like to sponsor the development of our project, you can go to the afdian website (https://afdian.net/a/starlitnightly) and sponsor us. diff --git a/omicverse_guide/docs/index.md b/omicverse_guide/docs/index.md index 564897cd..2d162a5d 100644 --- a/omicverse_guide/docs/index.md +++ b/omicverse_guide/docs/index.md @@ -12,7 +12,7 @@ Omicverse is the fundamental package for multi omics included bulk and single ce To get started with `omicverse`, check out the [Installation](Installation_guild) and [Tutorials](Tutorial). -For more details about the omicverse framework, please check out our [publication](https://www.biorxiv.org/content/10.1101/2023.06.06.543913v2). +For more details about the omicverse framework, please check out our [publication](https://www.nature.com/articles/s41467-024-50194-3). @@ -22,6 +22,6 @@ For more details about the omicverse framework, please check out our [publicatio ## Contact -- Zehua Zeng ([starlitnightly@163.com](mailto:starlitnightly@163.com), or [zehuazeng@xs.ustb.edu.cn](mailto:zehuazeng@xs.ustb.edu.cn)) +- Zehua Zeng ([starlitnightly@gmail.com](mailto:starlitnightly@gmail.com), or [zehuazeng@xs.ustb.edu.cn](mailto:zehuazeng@xs.ustb.edu.cn))