3D Slicer extension for segment registration (aka fusion, contour propagation).
As the registration step uses the Distance Map Based Registration module, please cite this paper if you use this extension: Fedorov, A., Khallaghi, S., Sánchez, C. A., Lasso, A., Fels, S., Tuncali, K., ... & Nguyen, P. L. (2015). Open-source image registration for MRI–TRUS fusion-guided prostate interventions. International journal of computer assisted radiology and surgery, 10(6), 925-934.
Paper to cite if you use the Prostate MRI-US Contour Propagation module: Poulin, E., Boudam, K., Pinter, C., Kadoury, S., Lasso, A., Fichtinger, G., & Ménard, C. (2017). Validation of MRI to US Registration for Focal HDR Prostate Brachytherapy. Brachytherapy, 16(3), S56-S57.
Generic module to register corresponding segments in two segmentations
Specialized module to register prostate contours in an MRI and an ultrasound study. Extra features:
- If input is DICOM, then selections are automatically initialized
- Calculate Dice similarity metrics and Hausdorff distances
- Calculate TRE with fiducials
- Export deformed MRI contours and image to DICOM, so that it can be imported to commercial system for brachytherapy cathether insertion
- Tutorial slides
- Video tutorial:
