.gitignore

*~
*.autosave
*.a
*.core
*.moc
*.o
*.obj
*.orig
*.rej
*.so
*.so.*
*_pch.h.cpp
*_resource.rc
*.qm
.#*
*.*#
core
!core/
tags
.DS_Store
.directory
*.debug
*.prl
*.app
moc_*.cpp
ui_*.h
qrc_*.cpp
Thumbs.db
*.res
*.rc
/.qmake.cache
/.qmake.stash

# qtcreator generated files
*.pro.user*

# xemacs temporary files
*.flc

# Vim temporary files
.*.swp

# Visual Studio generated files
*.ib_pdb_index
*.idb
*.ilk
*.pdb
*.sln
*.suo
*.vcproj
*vcproj.*.*.user
*.ncb
*.sdf
*.opensdf
*.vcxproj
*vcxproj.*

# MinGW generated files
*.Debug
*.Release

# Python byte code
*.pyc

# Binaries
*.dll
*.exe

# Perso
bin/
build/
include/*/*.pico
include/*/*/*.pico
include/htslib/bgzip
include/htslib/htsfile
include/htslib/tabix
include/htslib/version.h
include/htslib/test/fieldarith
include/htslib/test/hfile
include/htslib/test/hts_endian
include/htslib/test/pileup
include/htslib/test/sam
include/htslib/test/test-bcf-sr
include/htslib/test/test-bcf-translate
include/htslib/test/test-parse-reg
include/htslib/test/test-regidx
include/htslib/test/test-vcf-api
include/htslib/test/test-vcf-sweep
include/htslib/test/test_bgzf
include/htslib/test/test_index
include/htslib/test/test_kstring
include/htslib/test/test_realn
include/htslib/test/test_str2int
include/htslib/test/test_view
include/.htslib_configured
include/htslib/config.h
include/htslib/config.log
include/htslib/config.mk
include/htslib/config.status
include/htslib/htslib.pc.tmp