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mmlong2-lite-dfs.md

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Description of mmlong2-lite custom dataframes

bins_[output_name].tsv

Category Description
bin Genome bin ID
completeness_checkm1 Genome bin completeness estimate, reported by CheckM
contamination_checkm1 Genome bin contamination estimate, reported by CheckM
strain_heterogeneity_checkm1 Genome bin strain heterogeneity index, reported by CheckM
completeness_checkm2 Genome bin completeness estimate, reported by CheckM2
contamination_checkm2 Genome bin contamination estimate, reported by CheckM2
coding_density Genome bin gene coding density, reported by CheckM2
genome_size Genome bin size (bp), reported by CheckM2
contigs Number of contigs, reported by CheckM2
gc Genome bin guanine-cytosine content (%), reported by Quast
contig_n50 Genome bin N50 (bp), reported by Quast
contig_n90 Genome bin N90 (bp), reported by Quast
aun Nx area under the curve, reported by Quast
n_per_100kb Rate of Ns in a genome bin per 100 kb, reported by Quast
cov Genome bin coverage, reported by CoverM
r_abund Genome bin relative abundance (%), reported by CoverM
wf_name Workflow output name
wf_mode Workflow mode
wf_v Workflow version
wf_date Date of workflow completion