From 938e1cf779948ebdf686d22daf9008668c035d5a Mon Sep 17 00:00:00 2001 From: Doug Latornell Date: Wed, 20 Nov 2024 11:52:09 -0800 Subject: [PATCH] Update index page re: V21-11 datasets MIME-Version: 1.0 Content-Type: text/plain; charset=UTF-8 Content-Transfer-Encoding: 8bit * information about V21-11 NEMO config hindcast and datasets * information about differences between V21-11 and V19-05 configs * add example reference for carbon chemistry datasets * add Jarníková, et al, 2022 to list of publications to cite --- setup.xml | 127 +++++++++++++++++++++++++++++++++++++++++++----------- 1 file changed, 102 insertions(+), 25 deletions(-) diff --git a/setup.xml b/setup.xml index f737617..da7ded7 100755 --- a/setup.xml +++ b/setup.xml @@ -582,9 +582,9 @@ All of the information in [standardShortDescriptionHtml] is also contained in at the University of British Columbia (UBC). Available datasets include surface and 3D fields of currents, temperature, salinity, sea surface height, biological and chemical tracers from NEMO and FVCOM, - and wave fields WaveWatch3(TM), + and wave fields WaveWatch III®, as well as the Environment and Climate Change Canada (ECCC) - High Resolution Deterministic Preduction System (HRDPS) + High Resolution Deterministic Prediction System (HRDPS) atmospheric model fields used to force the models. Also available are aggregated datasets from selected Ocean Networks Canada (ONC) real-time sensors, and a real-time current dataset from a Vancouver Fraser Port Authority (VFPA) sensor at the 2nd Narrows railway bridge in Vancouver Harbour. @@ -594,44 +594,100 @@ All of the information in [standardShortDescriptionHtml] is also contained in for more information about the model and the SalishSeaCast system.

-

V19-05 NEMO Model is Live!

+

V21-11 NEMO Model is Live!

- The V19-05 version of the NEMO model went into daily production on 2020-02-16; - please see details below. - The V18-12 datasets were removed from this ERDDAP on 31-Mar-20. + A new, improved version of the SalishSeaCast NEMO model has been running in near-real-time since 1-Jan-2024. + A hindcast from 1-Jan-2007 using that model configuration was completed in late 2023. + New NEMO datasets from that model configuration were added to this ERDDAP starting in December 2023. + They are identified with a V21-11 version string in their dataset ids, titles, summaries, etc.

- A hindcast using the V19-05 model configuration starting from 2007-01-01 has been completed. - Results from that hindcast are included in the V19-05 datasets. + The hindcast was spun up for 5 years with best available forcing and boundary conditions for 2002-2006. + The spin-up years are not included in the V21-11 datasets.

- The hindcast was spun up for 2 years with its first year's forcing and boundary conditions. - The spin-up years are not included in the V19-05 datasets. + Time series datasets like hourly physics, biology, and chemistry variables will have + co-existing V19-05 and V21-11 versions until at least 31-Dec-2024, + after which time the V19-05 datasets will be removed.

- The rolling forecast datasets have transitioned to results from the V19-05 model configuration. + The rolling forecast datasets are from the V21-11 model configuration. The version part of the rolling forecast dataset ids was dropped on 2-Jul-2019 to reflect the fact that those datasets transition smoothly from one model version to the next. Please see the summary metadata item to learn what model version is producing the most recent fields in the rolling forecast datasets.

-

Changes Between V18-12 and V19-05

+

Changes Between V19-05 and V21-11

+

Physics

+

+ From Stang and Allen, 2024: +

+ + +

Biology

+

+ From Suchy, et al, in preparation: +

+

References

+

+ Stang C. and Allen S.E., 2024. + Seasonably variable estuarine exchange through inter-connected channels in the Salish Sea. + ESS Open Archive, November 11, 2024. + DOI: https://doi.org/10.22541/essoar.173134323.35470755/v1 +

+

+ Morrison, J., Foreman, M. G. G., & Masson, D., 2012. + A Method for Estimating Monthly Freshwater Discharge Affecting British Columbia Coastal Waters. Atmosphere-Ocean, 50(1), 1–8. + https://doi.org/10.1080/07055900.2011.637667 +

+

+ Moore-Maley, B. L., 2022. + Wind-driven upwelling and nutrient supply in a productive estuarine sea. + University of British Columbia. + https://open.library.ubc.ca/collections/ubctheses/24/items/1.0418447 +

+

Citing SalishSeaCast Datasets

If you use datasets from this ERDDAP server in your research, @@ -645,33 +701,54 @@ All of the information in [standardShortDescriptionHtml] is also contained in Velocity, temperature, and salinity fields from the SalishSeaCast model (Soontiens et al, 2016; Soontiens and Allen, 2017) were downloaded from their ERDDAP server (https://salishsea.eos.ubc.ca/erddap/) on DATE from datasets: DATASETID, DATASETID, ...

- Example reference for biological datasets: + Example reference for biological and dissolved oxygen datasets:

Nitrate, silicon, and diatom fields from the SalishSeaCast model (Soontiens et al, 2016; Moore-Maley et al, 2016; Soontiens and Allen, 2017; Olson et al, 2020) were downloaded from their ERDDAP server (https://salishsea.eos.ubc.ca/erddap/) on DATE from datasets: DATASETID, DATASETID, ...

- In either case, + Example reference for carbon chemistry datasets: +

+
+ Dissolved inorganic carbon, total alkalinity, and surface CO2 flux fields from the SalishSeaCast model (Soontiens et al, 2016; Moore-Maley et al, 2016; Soontiens and Allen, 2017; Olson et al, 2020; Jarníková et al, 2022) were downloaded from their ERDDAP server (https://salishsea.eos.ubc.ca/erddap/) on DATE from datasets: DATASETID, DATASETID, ... +
+

+ In any of those cases, you substitute in the DATE(s) on which you downloaded the fields, and the DATASETID(s) you downloaded from. The DATE(s) and DATASETID(s) help to ensure reproducibility of your work. - DATASETID(s) look like ubcSSg3DTracerFields1hV19-05 and are listed in the rightmost column of the table at https://salishsea.eos.ubc.ca/erddap/info/index.html + DATASETID(s) look like ubcSSg3DTracerFields1hV21-11 and are listed in the rightmost column of the table at https://salishsea.eos.ubc.ca/erddap/info/index.html

Publications to Cite

- Olson, E. M., Allen, S. E., Do, Vy, Dunphy, M., and Ianson, D., 2020. Assessment of Nutrient Supply by a Tidal Jet in the Northern Strait of Georgia Based on a Biogeochemical Model. J. Geophys. Res. Oceans 125(8). + Jarníková T., Ianson D., Allen S.E., Shao A.E., Olson E.M., 2022. + Anthropogenic carbon increase has caused critical shifts in aragonite saturation across a sensitive coastal system. + Global Biogeochemical Cycles, 36(7). + https://doi.org/10.1029/2021GB007024 +

+

+ Olson, E. M., Allen, S. E., Do, Vy, Dunphy, M., and Ianson, D., 2020. + Assessment of Nutrient Supply by a Tidal Jet in the Northern Strait of Georgia Based on a Biogeochemical Model. + J. Geophys. Res. Oceans 125(8). https://doi.org/10.1029/2019JC015766

- Soontiens, N. and Allen, S., 2017. Modelling sensitivities to mixing and advection in a sill-basin estuarine system. Ocean Modelling, 112, 17-32. https://dx.doi.org/10.1016/j.ocemod.2017.02.008 + Soontiens, N. and Allen, S., 2017. + Modelling sensitivities to mixing and advection in a sill-basin estuarine system. + Ocean Modelling, 112, 17-32. + https://dx.doi.org/10.1016/j.ocemod.2017.02.008

- Soontiens, N., Allen, S., Latornell, D., Le Souef, K., Machuca, I., Paquin, J.-P., Lu, Y., Thompson, K., Korabel, V., 2016. Storm surges in the Strait of Georgia simulated with a regional model. Atmosphere-Ocean, 54, 1-21. + Soontiens, N., Allen, S., Latornell, D., Le Souef, K., Machuca, I., Paquin, J.-P., Lu, Y., Thompson, K., Korabel, V., 2016. + Storm surges in the Strait of Georgia simulated with a regional model. + Atmosphere-Ocean, 54, 1-21. https://dx.doi.org/10.1080/07055900.2015.1108899

- Moore-Maley, B. L., Allen, S. E., and Ianson, D., 2016. Locally-driven interannual variability of near-surface pH and ΩA in the Strait of Georgia. J. Geophys. Res. Oceans, 121(3), 1600–1625. + Moore-Maley, B. L., Allen, S. E., and Ianson, D., 2016. + Locally-driven interannual variability of near-surface pH and ΩA in the Strait of Georgia. + J. Geophys. Res. Oceans, 121(3), 1600–1625. https://dx.doi.org/10.1002/2015JC011118