From 9377510358996e7369f9b9203bca93718da9f147 Mon Sep 17 00:00:00 2001 From: Doug Latornell Date: Tue, 19 Nov 2024 12:21:03 -0800 Subject: [PATCH] Add V21-11 month averaged fields datasets (#23) * Add ubcSSg3DChemistryFields1moV21-11 dataset * Correct ubcSSg3DChemistryFields1moV21-11 file name regex * Fix ubcSSg3DChemistryFields1moV21-11 coord & var attrs They are different to hourly average files from NEMO because month average files are created by Reshapr * Add ubcSSg3DPhysicsFields1moV21-11 dataset * Add ubcSSg3DBiologyFields1moV21-11 dataset * Add ubcSSg3DLightFields1moV21-11 dataset * Drop testOutOfDate attr from V19-05 month-avg datasets --- datasets.xml | 1359 +++++++++++++++-- datasets.yaml | 6 + .../ubcSSg3DBiologyFields1moV19-05.xml | 1 - .../ubcSSg3DTracerFields1moV19-05.xml | 1 - .../ubcSSg3DuGridFields1moV19-05.xml | 1 - .../ubcSSg3DvGridFields1moV19-05.xml | 1 - .../ubcSSg3DwGridFields1moV19-05.xml | 1 - .../ubcSSg3DBiologyFields1moV21-11.xml | 398 +++++ .../ubcSSg3DChemistryFields1moV21-11.xml | 237 +++ .../ubcSSg3DLightFields1moV21-11.xml | 218 +++ .../ubcSSg3DPhysicsFields1moV21-11.xml | 240 +++ .../ubcSSg3DBiologyFields1hV21-11.xml | 2 + .../ubcSSg3DLightFields1hV21-11.xml | 2 +- 13 files changed, 2330 insertions(+), 137 deletions(-) create mode 100644 datasets/ssc-nemo-202111/month-average/ubcSSg3DBiologyFields1moV21-11.xml create mode 100644 datasets/ssc-nemo-202111/month-average/ubcSSg3DChemistryFields1moV21-11.xml create mode 100644 datasets/ssc-nemo-202111/month-average/ubcSSg3DLightFields1moV21-11.xml create mode 100644 datasets/ssc-nemo-202111/month-average/ubcSSg3DPhysicsFields1moV21-11.xml diff --git a/datasets.xml b/datasets.xml index 9d8f0eb..41a8238 100644 --- a/datasets.xml +++ b/datasets.xml @@ -10,7 +10,10 @@ - 136.243.228.193,136.243.228.179 + 136.243.228.193,136.243.228.179, + + + 206.12.127.34 - null - null - modelResult - UTC - time values are UTC at the centre of the intervals over which the calculated model results are averaged; -e.g. the field average values for the 00:00 to 01:00 UTC hour on 2021-06-03 have a time value of 2021-06-03 00:30:00Z + null + null + modelResult + UTC + time values are UTC at the centre of the intervals over which the calculated model results are averaged; +e.g. the field average values for the 00:00 to 01:00 UTC hour on 2021-06-03 have a time value of 2021-06-03 00:30:00Z + + time + + + + y + gridY + + + Grid Y + y + modelResult + gridY values are grid indices in the model y-direction; +geo-location data for the SalishSeaCast NEMO model grid is available in the ubcSSnBathymetryV21-08 dataset. + + location + + + + x + gridX + + + Grid X + x + modelResult + gridX values are grid indices in the model x-direction; +geo-location data for the SalishSeaCast NEMO model grid is available in the ubcSSnBathymetryV21-08 dataset. + + location + + + + CO2_flux + co2_flux + float + + Flux of CO2 from Atmosphere to Ocean + surface_downward_mole_flux_of_carbon_dioxide + mmol m-2 s-1 + co2 + -0.001 + 0.001 + null + null + modelResult + null + null + null + null + null + + + + + + 10080 + 10000 + /results2/SalishSea/nowcast-green.202111/ + true + .*SalishSea_1h_\d{8}_\d{8}_grid_T\.nc$ + last + 20 + false + false + + + now-16hours + Grid + CF-1.6, COARDS, ACDD-1.3 + https://salishsea.eos.ubc.ca/ + UBC EOAS + Earth, Ocean & Atmospheric Sciences, University of British Columbia + +cell_thickness, deptht, e3t,, grid, ocean, oceans, +nonlinear free surface, vvl, variable volume layers, variable volume layer thicknesses, +sea water, seawater, time_counter + + The SalishSeaCast NEMO model results are copyright +by the SalishSeaCast Project Contributors and The University of British Columbia. + +They are licensed under the Apache License, Version 2.0. https://www.apache.org/licenses/LICENSE-2.0 + CF Standard Name Table v29 + Green, Salish Sea, 3d Variable Volume Layers Field, Hourly, v21-11 + +3d variable volume layers (VVL) thickness values averaged over 1 hour intervals from SalishSeaCast NEMO model runs with +physics, biology and chemistry. The values are calculated for the entire model grid +that includes the Juan de Fuca Strait, the Strait of Georgia, Puget Sound, +and Johnstone Strait on the coasts of Washington State and British Columbia. Values are the thickness of t-grid layers. +The time values are UTC. +They are the centre of the intervals over which the calculated model results are averaged; +e.g. the field average values for the 00:00 to 01:00 UTC hour on 2021-06-03 have a time value of 2021-06-03 00:30:00Z. +Geo-location and depth data for the SalishSeaCast NEMO model grid are available in the ubcSSnBathymetryV21-08 dataset. + +v21-11: NEMO-3.6 SalishSeaCast-202111 configuration; ubcSSnBathymetryV21-08 bathymetry; + see infoUrl link for full details. + Variable volume layers (VVL) thickness variable. + + Green, Salish Sea, 3d Variable Volume Layers Field, Hourly, v21-11 + SalishSeaCast NEMO Model + SalishSeaCast Project Contributors + sallen@eoas.ubc.ca + https://salishsea-meopar-docs.readthedocs.io/ + MEOPAR, Ocean Networks Canada (ONC), Digital Research Alliance of Canada + If you use this dataset in your research, +please reference it with wording similar to the example below, +and include citations of the publications below. +Inclusion of the date(s) when you downloaded the dataset, +and the dataset id help to ensure reproducibility of your work. + +Reference wording: + +Variable volume layers (VVL) thicknesses field from the SalishSeaCast model +(Soontiens et al, 2016; Soontiens and Allen, 2017) +were downloaded from their ERDDAP server +(https://salishsea.eos.ubc.ca/erddap/) +on DATE from dataset ubcSSgSeaSurfaceHeightField1hV21-11. + +Citations: + +Soontiens, N., Allen, S., Latornell, D., Le Souef, K., Machuca, I., Paquin, J.-P., Lu, Y., Thompson, K., Korabel, V., 2016. +Storm surges in the Strait of Georgia simulated with a regional model. Atmosphere-Ocean 54 1-21. +https://dx.doi.org/10.1080/07055900.2015.1108899 + +Soontiens, N. and Allen, S., 2017. +Modelling sensitivities to mixing and advection in a sill-basin estuarine system. Ocean Modelling, 112, 17-32. +https://dx.doi.org/10.1016/j.ocemod.2017.02.008 + + over + null + null + null + model variable volume layers thickness variable + + + time_counter + time + + + null + null + modelResult + UTC + time values are UTC at the centre of the intervals over which the calculated model results are averaged; +e.g. the field average values for the 00:00 to 01:00 UTC hour on 2021-06-03 have a time value of 2021-06-03 00:30:00Z + + time + + + + deptht + depth + + + null + null + null + Depth + depth + modelResult + location + + + + y + gridY + + + Grid Y + y + modelResult + gridY values are grid indices in the model y-direction; +geo-location data for the SalishSeaCast NEMO model grid is available in the ubcSSnBathymetryV21-08 dataset. + + location + + + + x + gridX + + + Grid X + x + modelResult + gridX values are grid indices in the model x-direction; +geo-location data for the SalishSeaCast NEMO model grid is available in the ubcSSnBathymetryV21-08 dataset. + + location + + + + e3t + e3t + float + + + Time-Varying z-Layer Thickness + cell_thickness + m + numerics + 0.0 + 30.0 + null + null + modelResult + null + null + null + null + null + + + + + + 10080 + 10000 + /results2/SalishSea/month-avg.202111/ + true + .*SalishSeaCast_1m_chem_T_\d{8}_\d{8}\.nc$ + last + 20 + false + false + + + now-36days + Grid + CF-1.6, COARDS, ACDD-1.3 + https://salishsea.eos.ubc.ca/ + UBC EOAS + Earth, Ocean & Atmospheric Sciences, University of British Columbia + +alkalinity, +carbon, chemistry, concentration, depth, dissolved, dissolved_inorganic_carbon, dissolved_oxygen, +Earth Science > Oceans > Ocean Chemistry > Alkalinity, +Earth Science > Oceans > Ocean Chemistry > Carbon, +Earth Science > Oceans > Ocean Chemistry > Inorganic Carbon, +Earth Science > Oceans > Ocean Chemistry > Oxygen, +mole_concentration_of_dissolved_inorganic_carbon_in_sea_water, +mole_concentration_of_dissolved_molecular_oxygen_in_sea_water, +O2, ocean, oceans, oxygen, +sea, sea_water_alkalinity_expressed_as_mole_equivalent, +seawater, time, total_alkalinity, water + + The SalishSeaCast NEMO model results are copyright +by the SalishSeaCast Project Contributors and The University of British Columbia. + +They are licensed under the Apache License, Version 2.0. https://www.apache.org/licenses/LICENSE-2.0 + CF Standard Name Table v29 + Green, Salish Sea, 3d Chemistry Fields, Monthly, v21-11 + +3d dissolved inorganic carbon, dissolved oxygen, and total alkalinity field values averaged over +1 month intervals from SalishSeaCast NEMO model runs with physics, biology and chemistry. +The values are calculated for the entire model grid that includes the Juan de Fuca Strait, +the Strait of Georgia, Puget Sound, and Johnstone Strait on the coasts of Washington State and British Columbia. +The time values are UTC. +They are the centre of the intervals over which the calculated model results are averaged; +e.g. the field average values for January 2007 have a time value of 2007-01-16 12:00:00Z. +Geo-location and depth data for the SalishSeaCast NEMO model grid are available in the ubcSSnBathymetryV21-08 dataset. + +v21-11: NEMO-3.6 SalishSeaCast-202111 configuration; ubcSSnBathymetryV21-08 bathymetry; + see infoUrl link for full details. + Dissolved inorganic carbon, dissolved oxygen, and total alkalinity variables. + + Green, Salish Sea, 3d Chemistry Fields, Monthly, v21-11 + SalishSeaCast NEMO Model + SalishSeaCast Project Contributors + sallen@eoas.ubc.ca + https://salishsea-meopar-docs.readthedocs.io/ + MEOPAR, Ocean Networks Canada (ONC), Digital Research Alliance of Canada + If you use this dataset in your research, +please reference it with wording similar to the example below, +and include citations of the publications below. +Inclusion of the date(s) when you downloaded the dataset, +and the dataset id help to ensure reproducibility of your work. + +Example wording: + +3d SKOG carbon chemistry and oxygen fields from the SalishSeaCast NEMO model +(Soontiens et al, 2016; Soontiens and Allen, 2017, Jarníková et al, 2022) +were downloaded from their ERDDAP server +(https://salishsea.eos.ubc.ca/erddap/) +on DATE from dataset ubcSSg3DChemistryFields1moV21-11. + +Citations: + +Soontiens, N., Allen, S., Latornell, D., Le Souef, K., Machuca, I., Paquin, J.-P., Lu, Y., Thompson, K., Korabel, V., 2016. +Storm surges in the Strait of Georgia simulated with a regional model. Atmosphere-Ocean 54 1-21. +https://dx.doi.org/10.1080/07055900.2015.1108899 + +Soontiens, N. and Allen, S., 2017. +Modelling sensitivities to mixing and advection in a sill-basin estuarine system. Ocean Modelling, 112, 17-32. +https://dx.doi.org/10.1016/j.ocemod.2017.02.008 + +Jarníková T., Ianson D., Allen S.E., Shao A.E., Olson E.M.. 2022. +Anthropogenic carbon increase has caused critical shifts in aragonite saturation across a sensitive coastal system. +Global Biogeochemical Cycles, 36(7). +https://doi.org/10.1029/2021GB007024 + + over + null + null + null + biogeochemical variables + + + time + time + + + null + modelResult + +time values are UTC at the centre of the intervals over which the calculated model results are averaged; +e.g. the field average values for January 2022 have a time value of 2022-01-15 12:00:00Z, +and those for April 2022 have a time value of 2022-04-15 00:00:00Z + + time + + + + depth + depth + + + null + Depth + depth + m + modelResult + location + + + + gridY + gridY + + + Grid Y + y + modelResult + gridY values are grid indices in the model y-direction; +geo-location data for the SalishSeaCast NEMO model grid is available in the ubcSSnBathymetryV21-08 dataset. + + location + + + + gridX + gridX + + + Grid X + x + modelResult + gridX values are grid indices in the model x-direction; +geo-location data for the SalishSeaCast NEMO model grid is available in the ubcSSnBathymetryV21-08 dataset. + + location + + + + + dissolved_inorganic_carbon + dissolved_inorganic_carbon + float + + + Dissolved Inorganic C Concentration + mole_concentration_of_dissolved_inorganic_carbon_in_sea_water + mmol m-3 + co2 + 2400.0 + 600.0 + null + modelResult + + + + + total_alkalinity + total_alkalinity + float + + + Total Alkalinity Concentration + sea_water_alkalinity_expressed_as_mole_equivalent + mmol m-3 + co2 + 2400.0 + 500.0 + null + modelResult + + + + + dissolved_oxygen + dissolved_oxygen + float + + + Dissolved Oxygen Concentration + mole_concentration_of_dissolved_molecular_oxygen_in_sea_water + mmol m-3 + dissolved_o2 + 500.0 + 0.0 + null + modelResult + + + + + + 10080 + 10000 + /results2/SalishSea/month-avg.202111/ + true + .*SalishSeaCast_1m_grid_T_\d{8}_\d{8}\.nc$ + last + 20 + false + false + + + now-36days + Grid + CF-1.6, COARDS, ACDD-1.3 + https://salishsea.eos.ubc.ca/ + UBC EOAS + Earth, Ocean & Atmospheric Sciences, University of British Columbia + conservative temperature, density, deptht, grid, ocean, oceans, +Oceans > Ocean Temperature > Conservative Temperature, +Oceans > Salinity, +Oceans > Salinity/Density > Density, +reference salinity, sea water, sea_water_conservative_temperature, sea_water_reference_salinity, +seawater, sea_water_sigma_theta, sigma, sigma_theta, time, vosaline, votemper, water + + The SalishSeaCast NEMO model results are copyright +by the SalishSeaCast Project Contributors and The University of British Columbia. + +They are licensed under the Apache License, Version 2.0. https://www.apache.org/licenses/LICENSE-2.0 + CF Standard Name Table v29 + Green, Salish Sea, 3d Physics Fields, Monthly, v21-11 + +3d salinity, water temperature, and density field values averaged over 1 month intervals +from SalishSeaCast NEMO model runs with physics, biology and chemistry. The values are calculated for the entire model grid +that includes the Juan de Fuca Strait, the Strait of Georgia, Puget Sound, +and Johnstone Strait on the coasts of Washington State and British Columbia. +The time values are UTC. +They are the centre of the intervals over which the calculated model results are averaged; +e.g. the field average values for January 2007 have a time value of 2007-01-16 12:00:00Z. +Geo-location and depth data for the SalishSeaCast NEMO model grid are available in the ubcSSnBathymetryV21-08 dataset. + +v1: salinity (practical) and temperature variables +v16-10: NEMO-3.6; ubcSSnBathymetry2V16-07 bathymetry; see infoUrl link for full details. + Changed salinity variable to reference salinity. + Changed temperature variable to conservative temperature. + Added squared buoyancy frequency variable. +v17-02: NEMO-3.6; ubcSSnBathymetryV17-02 bathymetry; see infoUrl link for full details. +v18-06: NEMO-3.6 SalishSeaCast-201806 configuration; ubcSSnBathymetryV17-02 bathymetry; + see infoUrl link for full details. + Removed squared buoyancy frequency variable. +v18-12: NEMO-3.6 SalishSeaCast-201812 configuration; ubcSSnBathymetryV17-02 bathymetry; + see infoUrl link for full details. +v19-05: NEMO-3.6 SalishSeaCast-201905 configuration; ubcSSnBathymetryV17-02 bathymetry; + see infoUrl link for full details. +v21-11: NEMO-3.6 SalishSeaCast-202111 configuration; ubcSSnBathymetryV21-08 bathymetry; + see infoUrl link for full details. + Added sigma_theta potential density variable. + + Green, Salish Sea, 3d Physics Fields, Monthly, v21-11 + SalishSeaCast NEMO Model + SalishSeaCast Project Contributors + sallen@eoas.ubc.ca + https://salishsea-meopar-docs.readthedocs.io/ + MEOPAR, Ocean Networks Canada (ONC), Digital Research Alliance of Canada + If you use this dataset in your research, +please reference it with wording similar to the example below, +and include citations of the publications below. +Inclusion of the date(s) when you downloaded the dataset, +and the dataset id help to ensure reproducibility of your work. + +Reference wording: + +3d potential temperature, reference salinity, and potential density fields from the SalishSeaCast NEMO model +(Soontiens et al, 2016; Soontiens and Allen, 2017) +were downloaded from their ERDDAP server +(https://salishsea.eos.ubc.ca/erddap/) +on DATE from dataset ubcSSg3DPhysicsFields1moV21-11. + +Citations: + +Soontiens, N., Allen, S., Latornell, D., Le Souef, K., Machuca, I., Paquin, J.-P., Lu, Y., Thompson, K., Korabel, V., 2016. +Storm surges in the Strait of Georgia simulated with a regional model. Atmosphere-Ocean 54 1-21. +https://dx.doi.org/10.1080/07055900.2015.1108899 + +Soontiens, N. and Allen, S., 2017. +Modelling sensitivities to mixing and advection in a sill-basin estuarine system. Ocean Modelling, 112, 17-32. +https://dx.doi.org/10.1016/j.ocemod.2017.02.008 + + over + null + null + null + + + time + time + + + null + modelResult + time values are UTC at the centre of the intervals over which the calculated model results are averaged; +e.g. the field average values for January 2007 have a time value of 2007-01-16 12:00:00Z + + time + + + + depth + depth + + + null + Depth + depth + modelResult + location + + + + gridY + gridY + + + Grid Y + y + modelResult + gridY values are grid indices in the model y-direction; +geo-location data for the SalishSeaCast NEMO model grid is available in the ubcSSnBathymetryV21-08 dataset. + + location + + + + gridX + gridX + + + Grid X + x + modelResult + gridX values are grid indices in the model x-direction; +geo-location data for the SalishSeaCast NEMO model grid is available in the ubcSSnBathymetryV21-08 dataset. + + location + + + + + vosaline + salinity + float + + + Reference Salinity + sea_water_reference_salinity + g kg-1 + null + 34.0 + 0.0 + modelResult + salinity + + + + votemper + temperature + float + + + Conservative Temperature + sea_water_conservative_temperature + degC + null + 20.0 + 4.0 + modelResult + temperature + + + + sigma_theta + sigma_theta + float + + + Potential Density (sigma_theta) + sea_water_sigma_theta + kg m-3 + null + 27.0 + 0.0 + modelResult + physical oceanography + + + + + + 10080 + 10000 + /results2/SalishSea/month-avg.202111/ + true + .*SalishSeaCast_1m_biol_T_\d{8}_\d{8}\.nc$ + last + 20 + false + false + + + now-36days + Grid + CF-1.6, COARDS, ACDD-1.3 + https://salishsea.eos.ubc.ca/ + UBC EOAS + Earth, Ocean & Atmospheric Sciences, University of British Columbia + ammonia, ammonium, aquatic, biogenic, biogenic_silicon, biological, +Biological Classification > Protists > Diatoms, +biosphere, +Biosphere > Aquatic Ecosystems > Plankton > Zooplankton, +chemistry, concentration, depth, detritus, diatoms, dissolved, dissolved_organic_nitrogen, ecosystems, +flagellates, marine, zooplankton, +mole_concentration_of_ammonium_in_sea_water, +mole_concentration_of_diatoms_expressed_as_nitrogen_in_sea_water, +mole_concentration_of_flagellates_expressed_as_nitrogen_in_sea_water, +mole_concentration_of_z1_zooplankton_expressed_as_nitrogen_in_sea_water, +mole_concentration_of_z2_zooplankton_expressed_as_nitrogen_in_sea_water, +mole_concentration_of_nitrate_in_sea_water, mole_concentration_of_organic_detritus_expressed_as_nitrogen_in_sea_water, +mole_concentration_of_organic_detritus_expressed_as_silicon_in_sea_water, +mole_concentration_of_particulate_organic_matter_expressed_as_nitrogen_in_sea_water, +mole_concentration_of_silicate_in_sea_water, n02, nh4, nitrate, nitrogen, no3, ocean, oceans, +Oceans > Ocean Chemistry > Ammonia, +Oceans > Ocean Chemistry > Nitrate, +Oceans > Ocean Chemistry > Nitrogen, +Oceans > Ocean Chemistry > Organic Matter, +Oceans > Ocean Chemistry > Silicate, +organic, particulate, particulate_organic_nitrogen, plankton, protists, river, sea, seawater, +silicate, silicon, time, tracer, water, zooplankton + + GCMD Science Keywords + The SalishSeaCast NEMO model results are copyright +by the SalishSeaCast Project Contributors and The University of British Columbia. + +They are licensed under the Apache License, Version 2.0. https://www.apache.org/licenses/LICENSE-2.0 + CF Standard Name Table v29 + Green, Salish Sea, 3d Biology Fields, Monthly, v21-11 + +3d SMELT biological model field values averaged over 1 month intervals +from SalishSeaCast NEMO model runs with physics, biology and chemistry. The values are calculated for the entire model grid +that includes the Juan de Fuca Strait, the Strait of Georgia, Puget Sound, +and Johnstone Strait on the coasts of Washington State and British Columbia. +The time values are UTC. +They are the centre of the intervals over which the calculated model results are averaged; +e.g. the field average values for January 2007 have a time value of 2007-01-16 12:00:00Z. +Geo-location and depth data for the SalishSeaCast NEMO model grid are available in the ubcSSnBathymetry21-08 dataset. + +v17-02: Micromolar concentrations of ammonium, biogenic silicon, ciliates (mesodinium rubrum), + diatoms, dissolved organic nitrogen, flagellates (nanophytoplankton), mesozooplankton, microzooplankton, + nitrate, particulate organic nitrogen, silicon. + Fraser River water turbidity tracer. + NEMO-3.6; ubcSSnBathymetryV17-02 bathymetry; see infoUrl link for full details. +v18-06: NEMO-3.6 SalishSeaCast-201806 configuration; ubcSSnBathymetryV17-02 bathymetry; + see infoUrl link for full details. +v18-12: NEMO-3.6 SalishSeaCast-201812 configuration; ubcSSnBathymetryV17-02 bathymetry; + see infoUrl link for full details. +v19-05: NEMO-3.6 SalishSeaCast-201905 configuration; ubcSSnBathymetryV17-02 bathymetry; + see infoUrl link for full details. +v21-11: NEMO-3.6 SalishSeaCast-202111 configuration; ubcSSnBathymetryV21-08 bathymetry; + see infoUrl link for full details. + + Green, Salish Sea, 3d Biology Fields, Monthly, v21-11 + SalishSeaCast NEMO Model + SalishSeaCast Project Contributors + sallen@eoas.ubc.ca + https://salishsea-meopar-docs.readthedocs.io/ + MEOPAR, Ocean Networks Canada (ONC), Digital Research Alliance of Canada + +If you use this dataset in your research, +please reference it with wording similar to the example below, +and include citations of the publications below. +Inclusion of the date(s) when you downloaded the dataset, +and the dataset id help to ensure reproducibility of your work. + +Example wording: + +3d SMELT biological model field values from the SalishSeaCast NEMO model +(Soontiens et al, 2016; Moore-Maley et al, 2016; Soontiens and Allen, 2017; Olson et al, 2020; Suchy et al, 2023) +were downloaded from their ERDDAP server +(https://salishsea.eos.ubc.ca/erddap/) +on DATE from dataset ubcSSg3DBiologyFields1moV21-11. + +Citations: + +Soontiens, N., Allen, S., Latornell, D., Le Souef, K., Machuca, I., Paquin, J.-P., Lu, Y., Thompson, K., Korabel, V., 2016. +Storm surges in the Strait of Georgia simulated with a regional model. +Atmosphere-Ocean 54 1-21. +https://dx.doi.org/10.1080/07055900.2015.1108899 + +Moore-Maley, B. L., Allen, S. E., and IansonD., 2016. +Locally-driven interannual variability of near-surface pH and ΩA in the Strait of Georgia. +J. Geophys. Res. Oceans, 121(3), 1600â€"1625. +https://dx.doi.org/10.1002/2015JC011118 + +Soontiens, N. and Allen, S., 2017. +Modelling sensitivities to mixing and advection in a sill-basin estuarine system. +Ocean Modelling, 112, 17-32. +https://dx.doi.org/10.1016/j.ocemod.2017.02.008 + +Olson, E. M., Allen, S. E., Do, Vy, Dunphy, M., and Ianson, D., 2020. +Assessment of Nutrient Supply by a Tidal Jet in the Northern Strait of Georgia Based on a Biogeochemical Model. +J. Geophys. Res. Oceans, 125(8). +https://doi.org/10.1029/2019JC015766 + +Suchy, K. D., Olson, E. M., Allen, S. E., Galbraith, M., Herrmann, B., Keister, J.E., Perry, R.I., Sastri, A. R., Young, K., 2023. +Seasonal and regional variability of model-based zooplankton biomass in the Salish Sea and evaluation against observations. +Progress in Oceanography, 219, 103171. +https://doi.org/10.1016/j.pocean.2023.103171 + + over + null + null + null + biogeochemical variables + + + time + time + + + null + modelResult + +time values are UTC at the centre of the intervals over which the calculated model results are averaged; +e.g. the field average values for January 2022 have a time value of 2022-01-15 12:00:00Z, +and those for April 2022 have a time value of 2022-04-15 00:00:00Z + + time + + + + depth + depth + + + null + Depth + depth + m + modelResult + location + + + + gridY + gridY + + + Grid Y + y + modelResult + +gridY values are grid indices in the model y-direction; +geo-location data for the SalishSeaCast NEMO model grid is available in the ubcSSnBathymetryV21-08 dataset. + + location + + + + gridX + gridX + + + Grid X + x + modelResult + +gridX values are grid indices in the model x-direction; +geo-location data for the SalishSeaCast NEMO model grid is available in the ubcSSnBathymetryV21-08 dataset. + + location + + + + ammonium + ammonium + float + + + null + 5.0 + 0.0 + dissolved_nutrients + + + + biogenic_silicon + biogenic_silicon + float + + + null + 0 + 70.0 + dissolved_nutrients + + + + diatoms + diatoms + float + + + null + 0 + 20.0 + biology + + + + dissolved_organic_nitrogen + dissolved_organic_nitrogen + float + + + null + dissolved_nutrients + + + + flagellates + flagellates + float + + + null + 128.0 + 0.0 + biology + + + + mesozooplankton + z2_zooplankton + float + + + Z2 Zooplankton Concentration + mole_concentration_of_z2_zooplankton_expressed_as_nitrogen_in_sea_water + mmol m-3 + biology + +The Z2 zooplankton class is the highest trophic level whose grazing impact is included in the model +and represents groups with larger body size, +longer life cycles, +and slower grazing rates +(e.g., diapausing copepod species, euphausiids, amphipods and hydrozoan jellies). + + null + biology + + + + microzooplankton + z1_zooplankton + float + + + Z1 Zooplankton Concentration + mole_concentration_of_z1_zooplankton_expressed_as_nitrogen_in_sea_water + mmol m-3 + biology + +The Z1 zooplankton class freely evolves based on model dynamics and includes groups with relatively small body size, +short life cycles, +high grazing rates, +or some combination of the three +(e.g., non-diapausing copepods, all copepod nauplii, dinoflagellates, foraminiferans, and larvaceans). - time + null + biology - - - y - gridY + + + nitrate + nitrate + float - Grid Y - y - modelResult - gridY values are grid indices in the model y-direction; -geo-location data for the SalishSeaCast NEMO model grid is available in the ubcSSnBathymetryV21-08 dataset. - - location + null + 40.0 + 0 + dissolved_nutrients - - - x - gridX + + + particulate_organic_nitrogen + particulate_organic_nitrogen + float - Grid X - x - modelResult - gridX values are grid indices in the model x-direction; -geo-location data for the SalishSeaCast NEMO model grid is available in the ubcSSnBathymetryV21-08 dataset. - - location + null + dissolved_nutrients - + - CO2_flux - co2_flux + silicon + silicon float + - Flux of CO2 from Atmosphere to Ocean - surface_downward_mole_flux_of_carbon_dioxide - mmol m-2 s-1 - co2 - -0.001 - 0.001 null - null - modelResult - null - null - null - null - null + 70.0 + 0 + dissolved_nutrients - + 10080 10000 - /results2/SalishSea/nowcast-green.202111/ + /results2/SalishSea/month-avg.202111/ true - .*SalishSea_1h_\d{8}_\d{8}_grid_T\.nc$ + .*SalishSeaCast_1m_chem_T_\d{8}_\d{8}\.nc$ last 20 false false - now-16hours + now-36days Grid CF-1.6, COARDS, ACDD-1.3 https://salishsea.eos.ubc.ca/ UBC EOAS Earth, Ocean & Atmospheric Sciences, University of British Columbia -cell_thickness, deptht, e3t,, grid, ocean, oceans, -nonlinear free surface, vvl, variable volume layers, variable volume layer thicknesses, -sea water, seawater, time_counter - +depth, downwelling_photosynthetic_photon_radiance_in_sea_water, +Fraser River, Fraser River turbidity, +Oceans > Ocean Optics > Photosynthetically Active Radiation, +Oceans > Ocean Optics > Radiance, +Oceans > Marine Sediments > Suspended Solids, +ocean, oceans, optics, +PAR, photon, photosynthetic, photosynthetically, radiance, radiation, seawater_turbidity, turbidity, +river, sea, seawater, +counter, tracer, water + + GCMD Science Keywords The SalishSeaCast NEMO model results are copyright by the SalishSeaCast Project Contributors and The University of British Columbia. They are licensed under the Apache License, Version 2.0. https://www.apache.org/licenses/LICENSE-2.0 CF Standard Name Table v29 - Green, Salish Sea, 3d Variable Volume Layers Field, Hourly, v21-11 + Green, Salish Sea, 3d PAR and Turbidity Fields, Monthly, v21-11 -3d variable volume layers (VVL) thickness values averaged over 1 hour intervals from SalishSeaCast NEMO model runs with -physics, biology and chemistry. The values are calculated for the entire model grid -that includes the Juan de Fuca Strait, the Strait of Georgia, Puget Sound, -and Johnstone Strait on the coasts of Washington State and British Columbia. Values are the thickness of t-grid layers. +3d photosynthetically available radiation (PAR) and Fraser River turbidity field values +averaged over 1 month intervals from SalishSeaCast NEMO model runs with physics, biology and chemistry. +The values are calculated for the entire model grid that includes the Juan de Fuca Strait, +the Strait of Georgia, Puget Sound, and Johnstone Strait on the coasts of Washington State and British Columbia. The time values are UTC. They are the centre of the intervals over which the calculated model results are averaged; -e.g. the field average values for the 00:00 to 01:00 UTC hour on 2021-06-03 have a time value of 2021-06-03 00:30:00Z. -Geo-location and depth data for the SalishSeaCast NEMO model grid are available in the ubcSSnBathymetryV21-08 dataset. +e.g. the field average values for January 2007 have a time value of 2007-01-16 12:00:00Z. +Geo-location and depth data for the SalishSeaCast NEMO model grid are available in the ubcSSnBathymetry21-08 dataset. v21-11: NEMO-3.6 SalishSeaCast-202111 configuration; ubcSSnBathymetryV21-08 bathymetry; see infoUrl link for full details. - Variable volume layers (VVL) thickness variable. - - Green, Salish Sea, 3d Variable Volume Layers Field, Hourly, v21-11 + Photosynthetically Available Radiation (PAR) and Fraser River water turbidity tracer. + + Green, Salish Sea, 3d PAR and Turbidity Fields, Monthly, v21-11 SalishSeaCast NEMO Model SalishSeaCast Project Contributors sallen@eoas.ubc.ca https://salishsea-meopar-docs.readthedocs.io/ MEOPAR, Ocean Networks Canada (ONC), Digital Research Alliance of Canada - If you use this dataset in your research, + +If you use this dataset in your research, please reference it with wording similar to the example below, and include citations of the publications below. Inclusion of the date(s) when you downloaded the dataset, and the dataset id help to ensure reproducibility of your work. -Reference wording: +Example wording: -Variable volume layers (VVL) thicknesses field from the SalishSeaCast model -(Soontiens et al, 2016; Soontiens and Allen, 2017) +3d photosynthetically available radiation (PAR) and Fraser River turbidity field values from the SalishSeaCast NEMO model +(Soontiens et al, 2016; Moore-Maley et al, 2016; Soontiens and Allen, 2017; Olson et al, 2020) were downloaded from their ERDDAP server (https://salishsea.eos.ubc.ca/erddap/) -on DATE from dataset ubcSSgSeaSurfaceHeightField1hV21-11. +on DATE from dataset ubcSSg3DLightFields1moV21-11. Citations: Soontiens, N., Allen, S., Latornell, D., Le Souef, K., Machuca, I., Paquin, J.-P., Lu, Y., Thompson, K., Korabel, V., 2016. -Storm surges in the Strait of Georgia simulated with a regional model. Atmosphere-Ocean 54 1-21. +Storm surges in the Strait of Georgia simulated with a regional model. +Atmosphere-Ocean 54 1-21. https://dx.doi.org/10.1080/07055900.2015.1108899 +Moore-Maley, B. L., Allen, S. E., and IansonD., 2016. +Locally-driven interannual variability of near-surface pH and ΩA in the Strait of Georgia. +J. Geophys. Res. Oceans, 121(3), 1600â€"1625. +https://dx.doi.org/10.1002/2015JC011118 + Soontiens, N. and Allen, S., 2017. -Modelling sensitivities to mixing and advection in a sill-basin estuarine system. Ocean Modelling, 112, 17-32. +Modelling sensitivities to mixing and advection in a sill-basin estuarine system. +Ocean Modelling, 112, 17-32. https://dx.doi.org/10.1016/j.ocemod.2017.02.008 + +Olson, E. M., Allen, S. E., Do, Vy, Dunphy, M., and Ianson, D., 2020. +Assessment of Nutrient Supply by a Tidal Jet in the Northern Strait of Georgia Based on a Biogeochemical Model. +J. Geophys. Res. Oceans, 125(8). +https://doi.org/10.1029/2019JC015766 over null null null - model variable volume layers thickness variable + PAR and turbidity variables - time_counter + time time null - null modelResult - UTC - time values are UTC at the centre of the intervals over which the calculated model results are averaged; -e.g. the field average values for the 00:00 to 01:00 UTC hour on 2021-06-03 have a time value of 2021-06-03 00:30:00Z + +time values are UTC at the centre of the intervals over which the calculated model results are averaged; +e.g. the field average values for January 2022 have a time value of 2022-01-15 12:00:00Z, +and those for April 2022 have a time value of 2022-04-15 00:00:00Z time - deptht + depth depth - null null - null Depth depth modelResult @@ -5668,7 +6761,7 @@ e.g. the field average values for the 00:00 to 01:00 UTC hour on 2021-06-03 have - y + gridY gridY @@ -5676,14 +6769,15 @@ e.g. the field average values for the 00:00 to 01:00 UTC hour on 2021-06-03 have Grid Y y modelResult - gridY values are grid indices in the model y-direction; + +gridY values are grid indices in the model y-direction; geo-location data for the SalishSeaCast NEMO model grid is available in the ubcSSnBathymetryV21-08 dataset. location - x + gridX gridX @@ -5691,48 +6785,56 @@ geo-location data for the SalishSeaCast NEMO model grid is available in the ubcS Grid X x modelResult - gridX values are grid indices in the model x-direction; + +gridX values are grid indices in the model x-direction; geo-location data for the SalishSeaCast NEMO model grid is available in the ubcSSnBathymetryV21-08 dataset. location - - e3t - e3t + + PAR + PAR float + 1 40 898 398 + NaNf + Photosynthetically Available Radiation + W/m2 + - Time-Varying z-Layer Thickness - cell_thickness - m - numerics + Photosynthetically Available Radiation + downwelling_photosynthetic_radiative_flux_in_sea_water + W m-2 + optical_properties + 350.0 + 0.0 + null + modelResult + + + + turbidity + turbidity + float + + + Fraser River Turbidity + seawater_turbidity + NTU + optical_properties 0.0 30.0 null - null modelResult - null - null - null - null - null - + 10080 @@ -7639,7 +8741,6 @@ https://dx.doi.org/10.1016/j.ocemod.2017.02.008 ocean U grid variables - now-36days Grid CF-1.6, COARDS, ACDD-1.3 https://salishsea.eos.ubc.ca/ @@ -7825,7 +8926,6 @@ https://dx.doi.org/10.1016/j.ocemod.2017.02.008 ocean V grid variables - now-36days Grid CF-1.6, COARDS, ACDD-1.3 https://salishsea.eos.ubc.ca/ @@ -8011,7 +9111,6 @@ https://dx.doi.org/10.1016/j.ocemod.2017.02.008 ocean W grid variables - now-36days Grid CF-1.6, COARDS, ACDD-1.3 https://salishsea.eos.ubc.ca/ @@ -8300,7 +9399,6 @@ https://dx.doi.org/10.1016/j.ocemod.2017.02.008 biogeochemical variables - now-36days Grid CF-1.6, COARDS, ACDD-1.3 https://salishsea.eos.ubc.ca/ @@ -8828,7 +9926,6 @@ https://doi.org/10.1029/2019JC015766 ocean T grid variables - now-36days Grid CF-1.6, COARDS, ACDD-1.3 https://salishsea.eos.ubc.ca/ diff --git a/datasets.yaml b/datasets.yaml index ec9ee9a..8064444 100644 --- a/datasets.yaml +++ b/datasets.yaml @@ -39,6 +39,12 @@ datasets: - ssc-nemo-202111/ubcSSg3DChemistryFields1hV21-11.xml - ssc-nemo-202111/ubcSSgSeaSurfaceCO2FluxField1hV21-11.xml - ssc-nemo-202111/ubcSSg3DVariableVolumeLayers1hV21-11.xml + # month-averaged fields + - ssc-nemo-202111/month-average/ubcSSg3DChemistryFields1moV21-11.xml + - ssc-nemo-202111/month-average/ubcSSg3DPhysicsFields1moV21-11.xml + - ssc-nemo-202111/month-average/ubcSSg3DBiologyFields1moV21-11.xml + - ssc-nemo-202111/month-average/ubcSSg3DLightFields1moV21-11.xml + # SalishSeaCast NEMO v2019-05 results # hour-averaged fields - ssc-nemo-201905/ubcSSg3DuGridFields1hV19-05.xml diff --git a/datasets/ssc-nemo-201905/month-average/ubcSSg3DBiologyFields1moV19-05.xml b/datasets/ssc-nemo-201905/month-average/ubcSSg3DBiologyFields1moV19-05.xml index c11f2ab..34e74a4 100644 --- a/datasets/ssc-nemo-201905/month-average/ubcSSg3DBiologyFields1moV19-05.xml +++ b/datasets/ssc-nemo-201905/month-average/ubcSSg3DBiologyFields1moV19-05.xml @@ -14,7 +14,6 @@ biogeochemical variables - now-36days Grid CF-1.6, COARDS, ACDD-1.3 https://salishsea.eos.ubc.ca/ diff --git a/datasets/ssc-nemo-201905/month-average/ubcSSg3DTracerFields1moV19-05.xml b/datasets/ssc-nemo-201905/month-average/ubcSSg3DTracerFields1moV19-05.xml index 09dba9b..8f880af 100644 --- a/datasets/ssc-nemo-201905/month-average/ubcSSg3DTracerFields1moV19-05.xml +++ b/datasets/ssc-nemo-201905/month-average/ubcSSg3DTracerFields1moV19-05.xml @@ -14,7 +14,6 @@ ocean T grid variables - now-36days Grid CF-1.6, COARDS, ACDD-1.3 https://salishsea.eos.ubc.ca/ diff --git a/datasets/ssc-nemo-201905/month-average/ubcSSg3DuGridFields1moV19-05.xml b/datasets/ssc-nemo-201905/month-average/ubcSSg3DuGridFields1moV19-05.xml index 8f728c0..a73ecc6 100644 --- a/datasets/ssc-nemo-201905/month-average/ubcSSg3DuGridFields1moV19-05.xml +++ b/datasets/ssc-nemo-201905/month-average/ubcSSg3DuGridFields1moV19-05.xml @@ -14,7 +14,6 @@ ocean U grid variables - now-36days Grid CF-1.6, COARDS, ACDD-1.3 https://salishsea.eos.ubc.ca/ diff --git a/datasets/ssc-nemo-201905/month-average/ubcSSg3DvGridFields1moV19-05.xml b/datasets/ssc-nemo-201905/month-average/ubcSSg3DvGridFields1moV19-05.xml index 87e4ddd..4b9053c 100644 --- a/datasets/ssc-nemo-201905/month-average/ubcSSg3DvGridFields1moV19-05.xml +++ b/datasets/ssc-nemo-201905/month-average/ubcSSg3DvGridFields1moV19-05.xml @@ -14,7 +14,6 @@ ocean V grid variables - now-36days Grid CF-1.6, COARDS, ACDD-1.3 https://salishsea.eos.ubc.ca/ diff --git a/datasets/ssc-nemo-201905/month-average/ubcSSg3DwGridFields1moV19-05.xml b/datasets/ssc-nemo-201905/month-average/ubcSSg3DwGridFields1moV19-05.xml index 758f6ad..8282e6f 100644 --- a/datasets/ssc-nemo-201905/month-average/ubcSSg3DwGridFields1moV19-05.xml +++ b/datasets/ssc-nemo-201905/month-average/ubcSSg3DwGridFields1moV19-05.xml @@ -14,7 +14,6 @@ ocean W grid variables - now-36days Grid CF-1.6, COARDS, ACDD-1.3 https://salishsea.eos.ubc.ca/ diff --git a/datasets/ssc-nemo-202111/month-average/ubcSSg3DBiologyFields1moV21-11.xml b/datasets/ssc-nemo-202111/month-average/ubcSSg3DBiologyFields1moV21-11.xml new file mode 100644 index 0000000..d92292c --- /dev/null +++ b/datasets/ssc-nemo-202111/month-average/ubcSSg3DBiologyFields1moV21-11.xml @@ -0,0 +1,398 @@ + + 10080 + 10000 + /results2/SalishSea/month-avg.202111/ + true + .*SalishSeaCast_1m_biol_T_\d{8}_\d{8}\.nc$ + last + 20 + false + false + + + now-36days + Grid + CF-1.6, COARDS, ACDD-1.3 + https://salishsea.eos.ubc.ca/ + UBC EOAS + Earth, Ocean & Atmospheric Sciences, University of British Columbia + ammonia, ammonium, aquatic, biogenic, biogenic_silicon, biological, +Biological Classification > Protists > Diatoms, +biosphere, +Biosphere > Aquatic Ecosystems > Plankton > Zooplankton, +chemistry, concentration, depth, detritus, diatoms, dissolved, dissolved_organic_nitrogen, ecosystems, +flagellates, marine, zooplankton, +mole_concentration_of_ammonium_in_sea_water, +mole_concentration_of_diatoms_expressed_as_nitrogen_in_sea_water, +mole_concentration_of_flagellates_expressed_as_nitrogen_in_sea_water, +mole_concentration_of_z1_zooplankton_expressed_as_nitrogen_in_sea_water, +mole_concentration_of_z2_zooplankton_expressed_as_nitrogen_in_sea_water, +mole_concentration_of_nitrate_in_sea_water, mole_concentration_of_organic_detritus_expressed_as_nitrogen_in_sea_water, +mole_concentration_of_organic_detritus_expressed_as_silicon_in_sea_water, +mole_concentration_of_particulate_organic_matter_expressed_as_nitrogen_in_sea_water, +mole_concentration_of_silicate_in_sea_water, n02, nh4, nitrate, nitrogen, no3, ocean, oceans, +Oceans > Ocean Chemistry > Ammonia, +Oceans > Ocean Chemistry > Nitrate, +Oceans > Ocean Chemistry > Nitrogen, +Oceans > Ocean Chemistry > Organic Matter, +Oceans > Ocean Chemistry > Silicate, +organic, particulate, particulate_organic_nitrogen, plankton, protists, river, sea, seawater, +silicate, silicon, time, tracer, water, zooplankton + + GCMD Science Keywords + The SalishSeaCast NEMO model results are copyright +by the SalishSeaCast Project Contributors and The University of British Columbia. + +They are licensed under the Apache License, Version 2.0. https://www.apache.org/licenses/LICENSE-2.0 + CF Standard Name Table v29 + Green, Salish Sea, 3d Biology Fields, Monthly, v21-11 + +3d SMELT biological model field values averaged over 1 month intervals +from SalishSeaCast NEMO model runs with physics, biology and chemistry. The values are calculated for the entire model grid +that includes the Juan de Fuca Strait, the Strait of Georgia, Puget Sound, +and Johnstone Strait on the coasts of Washington State and British Columbia. +The time values are UTC. +They are the centre of the intervals over which the calculated model results are averaged; +e.g. the field average values for January 2007 have a time value of 2007-01-16 12:00:00Z. +Geo-location and depth data for the SalishSeaCast NEMO model grid are available in the ubcSSnBathymetry21-08 dataset. + +v17-02: Micromolar concentrations of ammonium, biogenic silicon, ciliates (mesodinium rubrum), + diatoms, dissolved organic nitrogen, flagellates (nanophytoplankton), mesozooplankton, microzooplankton, + nitrate, particulate organic nitrogen, silicon. + Fraser River water turbidity tracer. + NEMO-3.6; ubcSSnBathymetryV17-02 bathymetry; see infoUrl link for full details. +v18-06: NEMO-3.6 SalishSeaCast-201806 configuration; ubcSSnBathymetryV17-02 bathymetry; + see infoUrl link for full details. +v18-12: NEMO-3.6 SalishSeaCast-201812 configuration; ubcSSnBathymetryV17-02 bathymetry; + see infoUrl link for full details. +v19-05: NEMO-3.6 SalishSeaCast-201905 configuration; ubcSSnBathymetryV17-02 bathymetry; + see infoUrl link for full details. +v21-11: NEMO-3.6 SalishSeaCast-202111 configuration; ubcSSnBathymetryV21-08 bathymetry; + see infoUrl link for full details. + + Green, Salish Sea, 3d Biology Fields, Monthly, v21-11 + SalishSeaCast NEMO Model + SalishSeaCast Project Contributors + sallen@eoas.ubc.ca + https://salishsea-meopar-docs.readthedocs.io/ + MEOPAR, Ocean Networks Canada (ONC), Digital Research Alliance of Canada + +If you use this dataset in your research, +please reference it with wording similar to the example below, +and include citations of the publications below. +Inclusion of the date(s) when you downloaded the dataset, +and the dataset id help to ensure reproducibility of your work. + +Example wording: + +3d SMELT biological model field values from the SalishSeaCast NEMO model +(Soontiens et al, 2016; Moore-Maley et al, 2016; Soontiens and Allen, 2017; Olson et al, 2020; Suchy et al, 2023) +were downloaded from their ERDDAP server +(https://salishsea.eos.ubc.ca/erddap/) +on DATE from dataset ubcSSg3DBiologyFields1moV21-11. + +Citations: + +Soontiens, N., Allen, S., Latornell, D., Le Souef, K., Machuca, I., Paquin, J.-P., Lu, Y., Thompson, K., Korabel, V., 2016. +Storm surges in the Strait of Georgia simulated with a regional model. +Atmosphere-Ocean 54 1-21. +https://dx.doi.org/10.1080/07055900.2015.1108899 + +Moore-Maley, B. L., Allen, S. E., and IansonD., 2016. +Locally-driven interannual variability of near-surface pH and ΩA in the Strait of Georgia. +J. Geophys. Res. Oceans, 121(3), 1600â€"1625. +https://dx.doi.org/10.1002/2015JC011118 + +Soontiens, N. and Allen, S., 2017. +Modelling sensitivities to mixing and advection in a sill-basin estuarine system. +Ocean Modelling, 112, 17-32. +https://dx.doi.org/10.1016/j.ocemod.2017.02.008 + +Olson, E. M., Allen, S. E., Do, Vy, Dunphy, M., and Ianson, D., 2020. +Assessment of Nutrient Supply by a Tidal Jet in the Northern Strait of Georgia Based on a Biogeochemical Model. +J. Geophys. Res. Oceans, 125(8). +https://doi.org/10.1029/2019JC015766 + +Suchy, K. D., Olson, E. M., Allen, S. E., Galbraith, M., Herrmann, B., Keister, J.E., Perry, R.I., Sastri, A. R., Young, K., 2023. +Seasonal and regional variability of model-based zooplankton biomass in the Salish Sea and evaluation against observations. +Progress in Oceanography, 219, 103171. +https://doi.org/10.1016/j.pocean.2023.103171 + + over + null + null + null + biogeochemical variables + + + time + time + + + null + modelResult + +time values are UTC at the centre of the intervals over which the calculated model results are averaged; +e.g. the field average values for January 2022 have a time value of 2022-01-15 12:00:00Z, +and those for April 2022 have a time value of 2022-04-15 00:00:00Z + + time + + + + depth + depth + + + null + Depth + depth + m + modelResult + location + + + + gridY + gridY + + + Grid Y + y + modelResult + +gridY values are grid indices in the model y-direction; +geo-location data for the SalishSeaCast NEMO model grid is available in the ubcSSnBathymetryV21-08 dataset. + + location + + + + gridX + gridX + + + Grid X + x + modelResult + +gridX values are grid indices in the model x-direction; +geo-location data for the SalishSeaCast NEMO model grid is available in the ubcSSnBathymetryV21-08 dataset. + + location + + + + ammonium + ammonium + float + + + null + 5.0 + 0.0 + dissolved_nutrients + + + + biogenic_silicon + biogenic_silicon + float + + + null + 0 + 70.0 + dissolved_nutrients + + + + diatoms + diatoms + float + + + null + 0 + 20.0 + biology + + + + dissolved_organic_nitrogen + dissolved_organic_nitrogen + float + + + null + dissolved_nutrients + + + + flagellates + flagellates + float + + + null + 128.0 + 0.0 + biology + + + + mesozooplankton + z2_zooplankton + float + + + Z2 Zooplankton Concentration + mole_concentration_of_z2_zooplankton_expressed_as_nitrogen_in_sea_water + mmol m-3 + biology + +The Z2 zooplankton class is the highest trophic level whose grazing impact is included in the model +and represents groups with larger body size, +longer life cycles, +and slower grazing rates +(e.g., diapausing copepod species, euphausiids, amphipods and hydrozoan jellies). + + null + biology + + + + microzooplankton + z1_zooplankton + float + + + Z1 Zooplankton Concentration + mole_concentration_of_z1_zooplankton_expressed_as_nitrogen_in_sea_water + mmol m-3 + biology + +The Z1 zooplankton class freely evolves based on model dynamics and includes groups with relatively small body size, +short life cycles, +high grazing rates, +or some combination of the three +(e.g., non-diapausing copepods, all copepod nauplii, dinoflagellates, foraminiferans, and larvaceans). + + null + biology + + + + nitrate + nitrate + float + + + null + 40.0 + 0 + dissolved_nutrients + + + + particulate_organic_nitrogen + particulate_organic_nitrogen + float + + + null + dissolved_nutrients + + + + silicon + silicon + float + + + null + 70.0 + 0 + dissolved_nutrients + + + diff --git a/datasets/ssc-nemo-202111/month-average/ubcSSg3DChemistryFields1moV21-11.xml b/datasets/ssc-nemo-202111/month-average/ubcSSg3DChemistryFields1moV21-11.xml new file mode 100644 index 0000000..2a6c451 --- /dev/null +++ b/datasets/ssc-nemo-202111/month-average/ubcSSg3DChemistryFields1moV21-11.xml @@ -0,0 +1,237 @@ + + 10080 + 10000 + /results2/SalishSea/month-avg.202111/ + true + .*SalishSeaCast_1m_chem_T_\d{8}_\d{8}\.nc$ + last + 20 + false + false + + + now-36days + Grid + CF-1.6, COARDS, ACDD-1.3 + https://salishsea.eos.ubc.ca/ + UBC EOAS + Earth, Ocean & Atmospheric Sciences, University of British Columbia + +alkalinity, +carbon, chemistry, concentration, depth, dissolved, dissolved_inorganic_carbon, dissolved_oxygen, +Earth Science > Oceans > Ocean Chemistry > Alkalinity, +Earth Science > Oceans > Ocean Chemistry > Carbon, +Earth Science > Oceans > Ocean Chemistry > Inorganic Carbon, +Earth Science > Oceans > Ocean Chemistry > Oxygen, +mole_concentration_of_dissolved_inorganic_carbon_in_sea_water, +mole_concentration_of_dissolved_molecular_oxygen_in_sea_water, +O2, ocean, oceans, oxygen, +sea, sea_water_alkalinity_expressed_as_mole_equivalent, +seawater, time, total_alkalinity, water + + The SalishSeaCast NEMO model results are copyright +by the SalishSeaCast Project Contributors and The University of British Columbia. + +They are licensed under the Apache License, Version 2.0. https://www.apache.org/licenses/LICENSE-2.0 + CF Standard Name Table v29 + Green, Salish Sea, 3d Chemistry Fields, Monthly, v21-11 + +3d dissolved inorganic carbon, dissolved oxygen, and total alkalinity field values averaged over +1 month intervals from SalishSeaCast NEMO model runs with physics, biology and chemistry. +The values are calculated for the entire model grid that includes the Juan de Fuca Strait, +the Strait of Georgia, Puget Sound, and Johnstone Strait on the coasts of Washington State and British Columbia. +The time values are UTC. +They are the centre of the intervals over which the calculated model results are averaged; +e.g. the field average values for January 2007 have a time value of 2007-01-16 12:00:00Z. +Geo-location and depth data for the SalishSeaCast NEMO model grid are available in the ubcSSnBathymetryV21-08 dataset. + +v21-11: NEMO-3.6 SalishSeaCast-202111 configuration; ubcSSnBathymetryV21-08 bathymetry; + see infoUrl link for full details. + Dissolved inorganic carbon, dissolved oxygen, and total alkalinity variables. + + Green, Salish Sea, 3d Chemistry Fields, Monthly, v21-11 + SalishSeaCast NEMO Model + SalishSeaCast Project Contributors + sallen@eoas.ubc.ca + https://salishsea-meopar-docs.readthedocs.io/ + MEOPAR, Ocean Networks Canada (ONC), Digital Research Alliance of Canada + If you use this dataset in your research, +please reference it with wording similar to the example below, +and include citations of the publications below. +Inclusion of the date(s) when you downloaded the dataset, +and the dataset id help to ensure reproducibility of your work. + +Example wording: + +3d SKOG carbon chemistry and oxygen fields from the SalishSeaCast NEMO model +(Soontiens et al, 2016; Soontiens and Allen, 2017, Jarníková et al, 2022) +were downloaded from their ERDDAP server +(https://salishsea.eos.ubc.ca/erddap/) +on DATE from dataset ubcSSg3DChemistryFields1moV21-11. + +Citations: + +Soontiens, N., Allen, S., Latornell, D., Le Souef, K., Machuca, I., Paquin, J.-P., Lu, Y., Thompson, K., Korabel, V., 2016. +Storm surges in the Strait of Georgia simulated with a regional model. Atmosphere-Ocean 54 1-21. +https://dx.doi.org/10.1080/07055900.2015.1108899 + +Soontiens, N. and Allen, S., 2017. +Modelling sensitivities to mixing and advection in a sill-basin estuarine system. Ocean Modelling, 112, 17-32. +https://dx.doi.org/10.1016/j.ocemod.2017.02.008 + +Jarníková T., Ianson D., Allen S.E., Shao A.E., Olson E.M.. 2022. +Anthropogenic carbon increase has caused critical shifts in aragonite saturation across a sensitive coastal system. +Global Biogeochemical Cycles, 36(7). +https://doi.org/10.1029/2021GB007024 + + over + null + null + null + biogeochemical variables + + + time + time + + + null + modelResult + +time values are UTC at the centre of the intervals over which the calculated model results are averaged; +e.g. the field average values for January 2022 have a time value of 2022-01-15 12:00:00Z, +and those for April 2022 have a time value of 2022-04-15 00:00:00Z + + time + + + + depth + depth + + + null + Depth + depth + m + modelResult + location + + + + gridY + gridY + + + Grid Y + y + modelResult + gridY values are grid indices in the model y-direction; +geo-location data for the SalishSeaCast NEMO model grid is available in the ubcSSnBathymetryV21-08 dataset. + + location + + + + gridX + gridX + + + Grid X + x + modelResult + gridX values are grid indices in the model x-direction; +geo-location data for the SalishSeaCast NEMO model grid is available in the ubcSSnBathymetryV21-08 dataset. + + location + + + + + dissolved_inorganic_carbon + dissolved_inorganic_carbon + float + + + Dissolved Inorganic C Concentration + mole_concentration_of_dissolved_inorganic_carbon_in_sea_water + mmol m-3 + co2 + 2400.0 + 600.0 + null + modelResult + + + + + total_alkalinity + total_alkalinity + float + + + Total Alkalinity Concentration + sea_water_alkalinity_expressed_as_mole_equivalent + mmol m-3 + co2 + 2400.0 + 500.0 + null + modelResult + + + + + dissolved_oxygen + dissolved_oxygen + float + + + Dissolved Oxygen Concentration + mole_concentration_of_dissolved_molecular_oxygen_in_sea_water + mmol m-3 + dissolved_o2 + 500.0 + 0.0 + null + modelResult + + + diff --git a/datasets/ssc-nemo-202111/month-average/ubcSSg3DLightFields1moV21-11.xml b/datasets/ssc-nemo-202111/month-average/ubcSSg3DLightFields1moV21-11.xml new file mode 100644 index 0000000..a67e777 --- /dev/null +++ b/datasets/ssc-nemo-202111/month-average/ubcSSg3DLightFields1moV21-11.xml @@ -0,0 +1,218 @@ + + 10080 + 10000 + /results2/SalishSea/month-avg.202111/ + true + .*SalishSeaCast_1m_chem_T_\d{8}_\d{8}\.nc$ + last + 20 + false + false + + + now-36days + Grid + CF-1.6, COARDS, ACDD-1.3 + https://salishsea.eos.ubc.ca/ + UBC EOAS + Earth, Ocean & Atmospheric Sciences, University of British Columbia + +depth, downwelling_photosynthetic_photon_radiance_in_sea_water, +Fraser River, Fraser River turbidity, +Oceans > Ocean Optics > Photosynthetically Active Radiation, +Oceans > Ocean Optics > Radiance, +Oceans > Marine Sediments > Suspended Solids, +ocean, oceans, optics, +PAR, photon, photosynthetic, photosynthetically, radiance, radiation, seawater_turbidity, turbidity, +river, sea, seawater, +counter, tracer, water + + GCMD Science Keywords + The SalishSeaCast NEMO model results are copyright +by the SalishSeaCast Project Contributors and The University of British Columbia. + +They are licensed under the Apache License, Version 2.0. https://www.apache.org/licenses/LICENSE-2.0 + CF Standard Name Table v29 + Green, Salish Sea, 3d PAR and Turbidity Fields, Monthly, v21-11 + +3d photosynthetically available radiation (PAR) and Fraser River turbidity field values +averaged over 1 month intervals from SalishSeaCast NEMO model runs with physics, biology and chemistry. +The values are calculated for the entire model grid that includes the Juan de Fuca Strait, +the Strait of Georgia, Puget Sound, and Johnstone Strait on the coasts of Washington State and British Columbia. +The time values are UTC. +They are the centre of the intervals over which the calculated model results are averaged; +e.g. the field average values for January 2007 have a time value of 2007-01-16 12:00:00Z. +Geo-location and depth data for the SalishSeaCast NEMO model grid are available in the ubcSSnBathymetry21-08 dataset. + +v21-11: NEMO-3.6 SalishSeaCast-202111 configuration; ubcSSnBathymetryV21-08 bathymetry; + see infoUrl link for full details. + Photosynthetically Available Radiation (PAR) and Fraser River water turbidity tracer. + + Green, Salish Sea, 3d PAR and Turbidity Fields, Monthly, v21-11 + SalishSeaCast NEMO Model + SalishSeaCast Project Contributors + sallen@eoas.ubc.ca + https://salishsea-meopar-docs.readthedocs.io/ + MEOPAR, Ocean Networks Canada (ONC), Digital Research Alliance of Canada + +If you use this dataset in your research, +please reference it with wording similar to the example below, +and include citations of the publications below. +Inclusion of the date(s) when you downloaded the dataset, +and the dataset id help to ensure reproducibility of your work. + +Example wording: + +3d photosynthetically available radiation (PAR) and Fraser River turbidity field values from the SalishSeaCast NEMO model +(Soontiens et al, 2016; Moore-Maley et al, 2016; Soontiens and Allen, 2017; Olson et al, 2020) +were downloaded from their ERDDAP server +(https://salishsea.eos.ubc.ca/erddap/) +on DATE from dataset ubcSSg3DLightFields1moV21-11. + +Citations: + +Soontiens, N., Allen, S., Latornell, D., Le Souef, K., Machuca, I., Paquin, J.-P., Lu, Y., Thompson, K., Korabel, V., 2016. +Storm surges in the Strait of Georgia simulated with a regional model. +Atmosphere-Ocean 54 1-21. +https://dx.doi.org/10.1080/07055900.2015.1108899 + +Moore-Maley, B. L., Allen, S. E., and IansonD., 2016. +Locally-driven interannual variability of near-surface pH and ΩA in the Strait of Georgia. +J. Geophys. Res. Oceans, 121(3), 1600â€"1625. +https://dx.doi.org/10.1002/2015JC011118 + +Soontiens, N. and Allen, S., 2017. +Modelling sensitivities to mixing and advection in a sill-basin estuarine system. +Ocean Modelling, 112, 17-32. +https://dx.doi.org/10.1016/j.ocemod.2017.02.008 + +Olson, E. M., Allen, S. E., Do, Vy, Dunphy, M., and Ianson, D., 2020. +Assessment of Nutrient Supply by a Tidal Jet in the Northern Strait of Georgia Based on a Biogeochemical Model. +J. Geophys. Res. Oceans, 125(8). +https://doi.org/10.1029/2019JC015766 + + over + null + null + null + PAR and turbidity variables + + + time + time + + + null + modelResult + +time values are UTC at the centre of the intervals over which the calculated model results are averaged; +e.g. the field average values for January 2022 have a time value of 2022-01-15 12:00:00Z, +and those for April 2022 have a time value of 2022-04-15 00:00:00Z + + time + + + + depth + depth + + + null + Depth + depth + modelResult + location + + + + gridY + gridY + + + Grid Y + y + modelResult + +gridY values are grid indices in the model y-direction; +geo-location data for the SalishSeaCast NEMO model grid is available in the ubcSSnBathymetryV21-08 dataset. + + location + + + + gridX + gridX + + + Grid X + x + modelResult + +gridX values are grid indices in the model x-direction; +geo-location data for the SalishSeaCast NEMO model grid is available in the ubcSSnBathymetryV21-08 dataset. + + location + + + + PAR + PAR + float + + + Photosynthetically Available Radiation + downwelling_photosynthetic_radiative_flux_in_sea_water + W m-2 + optical_properties + 350.0 + 0.0 + null + modelResult + + + + turbidity + turbidity + float + + + Fraser River Turbidity + seawater_turbidity + NTU + optical_properties + 0.0 + 30.0 + null + modelResult + + + diff --git a/datasets/ssc-nemo-202111/month-average/ubcSSg3DPhysicsFields1moV21-11.xml b/datasets/ssc-nemo-202111/month-average/ubcSSg3DPhysicsFields1moV21-11.xml new file mode 100644 index 0000000..e560fc8 --- /dev/null +++ b/datasets/ssc-nemo-202111/month-average/ubcSSg3DPhysicsFields1moV21-11.xml @@ -0,0 +1,240 @@ + + 10080 + 10000 + /results2/SalishSea/month-avg.202111/ + true + .*SalishSeaCast_1m_grid_T_\d{8}_\d{8}\.nc$ + last + 20 + false + false + + + now-36days + Grid + CF-1.6, COARDS, ACDD-1.3 + https://salishsea.eos.ubc.ca/ + UBC EOAS + Earth, Ocean & Atmospheric Sciences, University of British Columbia + conservative temperature, density, deptht, grid, ocean, oceans, +Oceans > Ocean Temperature > Conservative Temperature, +Oceans > Salinity, +Oceans > Salinity/Density > Density, +reference salinity, sea water, sea_water_conservative_temperature, sea_water_reference_salinity, +seawater, sea_water_sigma_theta, sigma, sigma_theta, time, vosaline, votemper, water + + The SalishSeaCast NEMO model results are copyright +by the SalishSeaCast Project Contributors and The University of British Columbia. + +They are licensed under the Apache License, Version 2.0. https://www.apache.org/licenses/LICENSE-2.0 + CF Standard Name Table v29 + Green, Salish Sea, 3d Physics Fields, Monthly, v21-11 + +3d salinity, water temperature, and density field values averaged over 1 month intervals +from SalishSeaCast NEMO model runs with physics, biology and chemistry. The values are calculated for the entire model grid +that includes the Juan de Fuca Strait, the Strait of Georgia, Puget Sound, +and Johnstone Strait on the coasts of Washington State and British Columbia. +The time values are UTC. +They are the centre of the intervals over which the calculated model results are averaged; +e.g. the field average values for January 2007 have a time value of 2007-01-16 12:00:00Z. +Geo-location and depth data for the SalishSeaCast NEMO model grid are available in the ubcSSnBathymetryV21-08 dataset. + +v1: salinity (practical) and temperature variables +v16-10: NEMO-3.6; ubcSSnBathymetry2V16-07 bathymetry; see infoUrl link for full details. + Changed salinity variable to reference salinity. + Changed temperature variable to conservative temperature. + Added squared buoyancy frequency variable. +v17-02: NEMO-3.6; ubcSSnBathymetryV17-02 bathymetry; see infoUrl link for full details. +v18-06: NEMO-3.6 SalishSeaCast-201806 configuration; ubcSSnBathymetryV17-02 bathymetry; + see infoUrl link for full details. + Removed squared buoyancy frequency variable. +v18-12: NEMO-3.6 SalishSeaCast-201812 configuration; ubcSSnBathymetryV17-02 bathymetry; + see infoUrl link for full details. +v19-05: NEMO-3.6 SalishSeaCast-201905 configuration; ubcSSnBathymetryV17-02 bathymetry; + see infoUrl link for full details. +v21-11: NEMO-3.6 SalishSeaCast-202111 configuration; ubcSSnBathymetryV21-08 bathymetry; + see infoUrl link for full details. + Added sigma_theta potential density variable. + + Green, Salish Sea, 3d Physics Fields, Monthly, v21-11 + SalishSeaCast NEMO Model + SalishSeaCast Project Contributors + sallen@eoas.ubc.ca + https://salishsea-meopar-docs.readthedocs.io/ + MEOPAR, Ocean Networks Canada (ONC), Digital Research Alliance of Canada + If you use this dataset in your research, +please reference it with wording similar to the example below, +and include citations of the publications below. +Inclusion of the date(s) when you downloaded the dataset, +and the dataset id help to ensure reproducibility of your work. + +Reference wording: + +3d potential temperature, reference salinity, and potential density fields from the SalishSeaCast NEMO model +(Soontiens et al, 2016; Soontiens and Allen, 2017) +were downloaded from their ERDDAP server +(https://salishsea.eos.ubc.ca/erddap/) +on DATE from dataset ubcSSg3DPhysicsFields1moV21-11. + +Citations: + +Soontiens, N., Allen, S., Latornell, D., Le Souef, K., Machuca, I., Paquin, J.-P., Lu, Y., Thompson, K., Korabel, V., 2016. +Storm surges in the Strait of Georgia simulated with a regional model. Atmosphere-Ocean 54 1-21. +https://dx.doi.org/10.1080/07055900.2015.1108899 + +Soontiens, N. and Allen, S., 2017. +Modelling sensitivities to mixing and advection in a sill-basin estuarine system. Ocean Modelling, 112, 17-32. +https://dx.doi.org/10.1016/j.ocemod.2017.02.008 + + over + null + null + null + + + time + time + + + null + modelResult + time values are UTC at the centre of the intervals over which the calculated model results are averaged; +e.g. the field average values for January 2007 have a time value of 2007-01-16 12:00:00Z + + time + + + + depth + depth + + + null + Depth + depth + modelResult + location + + + + gridY + gridY + + + Grid Y + y + modelResult + gridY values are grid indices in the model y-direction; +geo-location data for the SalishSeaCast NEMO model grid is available in the ubcSSnBathymetryV21-08 dataset. + + location + + + + gridX + gridX + + + Grid X + x + modelResult + gridX values are grid indices in the model x-direction; +geo-location data for the SalishSeaCast NEMO model grid is available in the ubcSSnBathymetryV21-08 dataset. + + location + + + + + vosaline + salinity + float + + + Reference Salinity + sea_water_reference_salinity + g kg-1 + null + 34.0 + 0.0 + modelResult + salinity + + + + votemper + temperature + float + + + Conservative Temperature + sea_water_conservative_temperature + degC + null + 20.0 + 4.0 + modelResult + temperature + + + + sigma_theta + sigma_theta + float + + + Potential Density (sigma_theta) + sea_water_sigma_theta + kg m-3 + null + 27.0 + 0.0 + modelResult + physical oceanography + + + diff --git a/datasets/ssc-nemo-202111/ubcSSg3DBiologyFields1hV21-11.xml b/datasets/ssc-nemo-202111/ubcSSg3DBiologyFields1hV21-11.xml index 851c620..eb07f1a 100644 --- a/datasets/ssc-nemo-202111/ubcSSg3DBiologyFields1hV21-11.xml +++ b/datasets/ssc-nemo-202111/ubcSSg3DBiologyFields1hV21-11.xml @@ -402,6 +402,7 @@ and slower grazing rates null null null + biology @@ -442,6 +443,7 @@ or some combination of the three null null null + biology diff --git a/datasets/ssc-nemo-202111/ubcSSg3DLightFields1hV21-11.xml b/datasets/ssc-nemo-202111/ubcSSg3DLightFields1hV21-11.xml index ee67ac9..0b58b89 100644 --- a/datasets/ssc-nemo-202111/ubcSSg3DLightFields1hV21-11.xml +++ b/datasets/ssc-nemo-202111/ubcSSg3DLightFields1hV21-11.xml @@ -71,7 +71,7 @@ Example wording: (Soontiens et al, 2016; Moore-Maley et al, 2016; Soontiens and Allen, 2017; Olson et al, 2020) were downloaded from their ERDDAP server (https://salishsea.eos.ubc.ca/erddap/) -on DATE from dataset ubcSSg3DBiologyFields1hV21-11. +on DATE from dataset ubcSSg3DLightFields1hV21-11. Citations: