DESCRIPTION

Package: PseudotimeDE
Type: Package
Title: Inference of differential gene expression along cell pseudotime with well-calibrated p-values from single-cell RNA sequencing data
Version: 0.99.0
Authors@R: c(person("Dongyuan", "Song", email = "dongyuansong@ucla.edu", role = c("aut", "cre"), comment = c(ORCID = "0000-0003-1114-1215")),
             person("Tianyang", "Liu", role = "ctb"),
             person("Huy", "Nguyen", role = "ctb"),
             person("Shiyu", "Ma", role = "ctb"))
Maintainer: Dongyuan Song <dongyuansong@ucla.edu>
Description: PseudotimeDE performs the differential expression (DE) analysis of genes along the pseudotime.
    Given a single cell RNA-seq data and a pseudotime inference method, pseudotimeDE returns the p-value of each gene.
Depends: R (>= 3.6.0)
biocViews:
Imports: 
    SummarizedExperiment,
    mgcv,
    tidyr,
    mixtools,
    goftest,
    stats,
    dplyr,
    purrr,
    fitdistrplus,
    magrittr,
    tibble,
    ggplot2,
    Seurat,
    BiocParallel,
    qgam
Suggests: 
    testthat,
    knitr,
    rmarkdown,
    SingleCellExperiment,
    irlba,
    SeuratObject,
    scales,
    slingshot,
    BiocStyle,
    sf
License: MIT + file LICENSE
Encoding: UTF-8
LazyData: true
LazyDataCompression: xz
RoxygenNote: 7.3.1
VignetteBuilder: knitr
URL: https://github.com/SONGDONGYUAN1994/PseudotimeDE
BugReports: https://github.com/SONGDONGYUAN1994/PseudotimeDE/issues