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Biofilter may be dropping intergenic variations (noncoding) #17

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van-truong opened this issue Dec 16, 2024 · 0 comments
Open

Biofilter may be dropping intergenic variations (noncoding) #17

van-truong opened this issue Dec 16, 2024 · 0 comments
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2.4.4 bug Something isn't working

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@van-truong
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van-truong commented Dec 16, 2024

This is a combination of issues that Rasika and Nikki separately observed. We need to check how much Biofilter is mapping SNPs, genes, ensembl IDs, and other info for intergenic regions

In scenarios where there's multiple gene variations, is Biofilter dropping intergenic variations (noncoding) and only showing the user the coding variation? RS# IDs, LOC locus IDs, genomic positions in noncoding regions, etc

Will add more to this issue thread soon.

@van-truong van-truong added bug Something isn't working 2.4.4 labels Dec 16, 2024
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