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# Byte-compiled / optimized / DLL files
__pycache__/
*.py[cod]
# C extensions
*.so
# Distribution / packaging
.Python
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build/
develop-eggs/
dist/
downloads/
eggs/
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lib/
lib64/
parts/
sdist/
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*.egg-info/
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# Usually these files are written by a python script from a template
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pip-delete-this-directory.txt
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htmlcov/
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coverage.xml
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target/
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# Pycharm
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notebooks/experimental/Adventitial fibroblasts.png
notebooks/experimental/Alveolar fibroblasts.png
notebooks/experimental/Alveolar macrophages.png
notebooks/experimental/Alveolar Mph CCL3+.png
notebooks/experimental/Alveolar Mph MT-positive.png
notebooks/experimental/Alveolar Mph proliferating.png
notebooks/experimental/AT0.png
notebooks/experimental/AT1.png
notebooks/experimental/AT2 proliferating.png
notebooks/experimental/AT2.png
notebooks/experimental/B cells.png
notebooks/experimental/Basal resting.png
notebooks/experimental/CD4 T cells.png
notebooks/experimental/CD8 T cells.png
notebooks/experimental/Classical monocytes.png
notebooks/experimental/Club (nasal).png
notebooks/experimental/Club (non-nasal).png
notebooks/experimental/DC1.png
notebooks/experimental/DC2.png
notebooks/experimental/Deuterosomal.png
notebooks/experimental/EC aerocyte capillary.png
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test.h5ad
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.gitignore
notebooks/experimental/squidpy_marker_mapping/mapping_approach_with_top_markers.xlsx
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notebooks/experimental/gene_marker/2_Smooth muscle_test_plot.png
notebooks/experimental/gene_marker/all_results.json
notebooks/experimental/gene_marker/AT1_test_plot.png
notebooks/experimental/gene_marker/AT2_test_plot.png
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notebooks/experimental/gene_marker/best_results.json
notebooks/experimental/gene_marker/EC arterial_test_plot.png
notebooks/experimental/gene_marker/EC capillary_test_plot.png
notebooks/experimental/gene_marker/EC venous_test_plot.png
notebooks/experimental/gene_marker/Fibroblasts_test_plot.png
notebooks/experimental/gene_marker/Innate lymphoid cell NK_test_plot.png
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notebooks/experimental/gene_marker/iMarkerSelector/2_Smooth muscle_4_results.xlsx
notebooks/experimental/gene_marker/iMarkerSelector/2_Smooth muscle_5_results.xlsx
notebooks/experimental/gene_marker/iMarkerSelector/2_Smooth muscle_6_results.xlsx
notebooks/experimental/gene_marker/iMarkerSelector/2_Smooth muscle_7_results.xlsx
notebooks/experimental/gene_marker/iMarkerSelector/2_Smooth muscle_8_results.xlsx
notebooks/experimental/gene_marker/iMarkerSelector/2_Smooth muscle_9_results.xlsx
notebooks/experimental/gene_marker/iMarkerSelector/2_Smooth muscle_10_results.xlsx
notebooks/experimental/gene_marker/iMarkerSelector/2_Smooth muscle_11_results.xlsx
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notebooks/experimental/gene_marker/iMarkerSelector/2_Smooth muscle_20_results.xlsx
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notebooks/experimental/gene_marker/iMarkerSelector/AT1_3_results.xlsx
notebooks/experimental/gene_marker/iMarkerSelector/AT1_4_results.xlsx
notebooks/experimental/gene_marker/iMarkerSelector/AT1_5_results.xlsx
notebooks/experimental/gene_marker/iMarkerSelector/AT1_6_results.xlsx
notebooks/experimental/gene_marker/iMarkerSelector/AT1_7_results.xlsx
notebooks/experimental/gene_marker/iMarkerSelector/AT1_8_results.xlsx
notebooks/experimental/gene_marker/iMarkerSelector/AT1_9_results.xlsx
notebooks/experimental/gene_marker/iMarkerSelector/AT1_10_results.xlsx
notebooks/experimental/gene_marker/iMarkerSelector/AT1_11_results.xlsx
notebooks/experimental/gene_marker/iMarkerSelector/AT1_12_results.xlsx
notebooks/experimental/gene_marker/iMarkerSelector/AT1_13_results.xlsx
notebooks/experimental/gene_marker/iMarkerSelector/AT1_14_results.xlsx
notebooks/experimental/gene_marker/iMarkerSelector/AT1_15_results.xlsx
notebooks/experimental/gene_marker/iMarkerSelector/AT1_16_results.xlsx
notebooks/experimental/gene_marker/iMarkerSelector/AT1_17_results.xlsx
notebooks/experimental/gene_marker/iMarkerSelector/AT1_18_results.xlsx
notebooks/experimental/gene_marker/iMarkerSelector/AT1_19_results.xlsx
notebooks/experimental/gene_marker/iMarkerSelector/AT1_20_results.xlsx
notebooks/experimental/gene_marker/iMarkerSelector/AT1_test_plot.png
notebooks/experimental/gene_marker/iMarkerSelector/AT2_3_results.xlsx
notebooks/experimental/gene_marker/iMarkerSelector/AT2_4_results.xlsx
notebooks/experimental/gene_marker/iMarkerSelector/AT2_5_results.xlsx
notebooks/experimental/gene_marker/iMarkerSelector/AT2_6_results.xlsx
notebooks/experimental/gene_marker/iMarkerSelector/AT2_7_results.xlsx
notebooks/experimental/gene_marker/iMarkerSelector/AT2_8_results.xlsx
notebooks/experimental/gene_marker/iMarkerSelector/AT2_9_results.xlsx
notebooks/experimental/gene_marker/iMarkerSelector/AT2_10_results.xlsx
notebooks/experimental/gene_marker/iMarkerSelector/AT2_11_results.xlsx
notebooks/experimental/gene_marker/iMarkerSelector/AT2_12_results.xlsx
notebooks/experimental/gene_marker/iMarkerSelector/AT2_13_results.xlsx
notebooks/experimental/gene_marker/iMarkerSelector/AT2_14_results.xlsx
notebooks/experimental/gene_marker/iMarkerSelector/AT2_15_results.xlsx
notebooks/experimental/gene_marker/iMarkerSelector/AT2_16_results.xlsx
notebooks/experimental/gene_marker/iMarkerSelector/AT2_17_results.xlsx
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notebooks/experimental/gene_marker/iMarkerSelector/B cell lineage_3_results.xlsx
notebooks/experimental/gene_marker/iMarkerSelector/B cell lineage_4_results.xlsx
notebooks/experimental/gene_marker/iMarkerSelector/B cell lineage_5_results.xlsx
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notebooks/experimental/gene_marker/iMarkerSelector/B cell lineage_8_results.xlsx
notebooks/experimental/gene_marker/iMarkerSelector/B cell lineage_9_results.xlsx
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notebooks/experimental/gene_marker/iMarkerSelector/B cell lineage_11_results.xlsx
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notebooks/experimental/gene_marker/iMarkerSelector/B cell lineage_14_results.xlsx
notebooks/experimental/gene_marker/iMarkerSelector/B cell lineage_15_results.xlsx
notebooks/experimental/gene_marker/iMarkerSelector/B cell lineage_16_results.xlsx
notebooks/experimental/gene_marker/iMarkerSelector/B cell lineage_17_results.xlsx
notebooks/experimental/gene_marker/iMarkerSelector/B cell lineage_18_results.xlsx
notebooks/experimental/gene_marker/iMarkerSelector/B cell lineage_19_results.xlsx
notebooks/experimental/gene_marker/iMarkerSelector/B cell lineage_20_results.xlsx
notebooks/experimental/gene_marker/iMarkerSelector/B cell lineage_test_plot.png
notebooks/experimental/gene_marker/iMarkerSelector/best_results.json
notebooks/experimental/gene_marker/iMarkerSelector/EC arterial_3_results.xlsx
notebooks/experimental/gene_marker/iMarkerSelector/EC arterial_4_results.xlsx
notebooks/experimental/gene_marker/iMarkerSelector/EC arterial_5_results.xlsx
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notebooks/experimental/gene_marker/iMarkerSelector/EC arterial_7_results.xlsx
notebooks/experimental/gene_marker/iMarkerSelector/EC arterial_8_results.xlsx
notebooks/experimental/gene_marker/iMarkerSelector/EC arterial_9_results.xlsx
notebooks/experimental/gene_marker/iMarkerSelector/EC arterial_10_results.xlsx
notebooks/experimental/gene_marker/iMarkerSelector/EC arterial_11_results.xlsx
notebooks/experimental/gene_marker/iMarkerSelector/EC arterial_12_results.xlsx
notebooks/experimental/gene_marker/iMarkerSelector/EC arterial_13_results.xlsx
notebooks/experimental/gene_marker/iMarkerSelector/EC arterial_14_results.xlsx
notebooks/experimental/gene_marker/iMarkerSelector/EC arterial_15_results.xlsx
notebooks/experimental/gene_marker/iMarkerSelector/EC arterial_16_results.xlsx
notebooks/experimental/gene_marker/iMarkerSelector/EC arterial_17_results.xlsx
notebooks/experimental/gene_marker/iMarkerSelector/EC arterial_18_results.xlsx
notebooks/experimental/gene_marker/iMarkerSelector/EC arterial_19_results.xlsx
notebooks/experimental/gene_marker/iMarkerSelector/EC arterial_20_results.xlsx
notebooks/experimental/gene_marker/iMarkerSelector/EC arterial_test_plot.png
notebooks/experimental/gene_marker/iMarkerSelector/EC capillary_3_results.xlsx
notebooks/experimental/gene_marker/iMarkerSelector/EC capillary_4_results.xlsx
notebooks/experimental/gene_marker/iMarkerSelector/EC capillary_5_results.xlsx
notebooks/experimental/gene_marker/iMarkerSelector/EC capillary_6_results.xlsx
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notebooks/experimental/gene_marker/iMarkerSelector/EC capillary_8_results.xlsx
notebooks/experimental/gene_marker/iMarkerSelector/EC capillary_9_results.xlsx
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notebooks/experimental/gene_marker/iMarkerSelector/EC capillary_13_results.xlsx
notebooks/experimental/gene_marker/iMarkerSelector/EC capillary_14_results.xlsx
notebooks/experimental/gene_marker/iMarkerSelector/EC capillary_15_results.xlsx
notebooks/experimental/gene_marker/iMarkerSelector/EC capillary_16_results.xlsx
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notebooks/experimental/gene_marker/iMarkerSelector/EC capillary_18_results.xlsx
notebooks/experimental/gene_marker/iMarkerSelector/EC capillary_19_results.xlsx
notebooks/experimental/gene_marker/iMarkerSelector/EC capillary_20_results.xlsx
notebooks/experimental/gene_marker/iMarkerSelector/EC capillary_test_plot.png
notebooks/experimental/gene_marker/iMarkerSelector/EC venous_3_results.xlsx
notebooks/experimental/gene_marker/iMarkerSelector/EC venous_4_results.xlsx
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notebooks/experimental/gene_marker/iMarkerSelector/EC venous_6_results.xlsx
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notebooks/experimental/gene_marker/iMarkerSelector/EC venous_10_results.xlsx
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notebooks/experimental/gene_marker/iMarkerSelector/EC venous_12_results.xlsx
notebooks/experimental/gene_marker/iMarkerSelector/EC venous_13_results.xlsx
notebooks/experimental/gene_marker/iMarkerSelector/EC venous_14_results.xlsx
notebooks/experimental/gene_marker/iMarkerSelector/EC venous_15_results.xlsx
notebooks/experimental/gene_marker/iMarkerSelector/EC venous_16_results.xlsx
notebooks/experimental/gene_marker/iMarkerSelector/EC venous_17_results.xlsx
notebooks/experimental/gene_marker/iMarkerSelector/EC venous_18_results.xlsx
notebooks/experimental/gene_marker/iMarkerSelector/EC venous_19_results.xlsx
notebooks/experimental/gene_marker/iMarkerSelector/EC venous_20_results.xlsx
notebooks/experimental/gene_marker/iMarkerSelector/EC venous_test_plot.png
notebooks/experimental/gene_marker/iMarkerSelector/Fibroblasts_3_results.xlsx
notebooks/experimental/gene_marker/iMarkerSelector/Fibroblasts_4_results.xlsx
notebooks/experimental/gene_marker/iMarkerSelector/Fibroblasts_5_results.xlsx
notebooks/experimental/gene_marker/iMarkerSelector/Fibroblasts_6_results.xlsx
notebooks/experimental/gene_marker/iMarkerSelector/Fibroblasts_7_results.xlsx
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