From becc1cd61adcb9706eb0f5e3a4ff160f1cfc8ec7 Mon Sep 17 00:00:00 2001 From: Karin Slater Date: Thu, 18 Jan 2024 17:09:07 +0000 Subject: [PATCH] fix templates run release --- rbo-base.owl | 13 +- rbo-full.owl | 259 ++++++++++------------ rbo.owl | 213 ++++++++---------- src/ontology/components/all_templates.owl | 11 +- src/templates/RBO_classes.owl | 9 +- src/templates/RBO_individuals.tsv | 8 +- 6 files changed, 216 insertions(+), 297 deletions(-) diff --git a/rbo-base.owl b/rbo-base.owl index 97d09d5..8db25ac 100644 --- a/rbo-base.owl +++ b/rbo-base.owl @@ -12,12 +12,12 @@ xmlns:terms="http://purl.org/dc/terms/" xmlns:oboInOwl="http://www.geneontology.org/formats/oboInOwl#"> - + RBO is an ontology for the effects of radiation on biota in terrestrial and space environments. Radiation Biology Ontology - 2024-01-17 + 2024-01-18 @@ -4447,7 +4447,8 @@ - + + An atomic nucleus, fully stripped of its orbital electrons, containing 2 or more protons. Nuclei containing between 2 protons (helium) and 6 protons (carbon) are sometimes referred to as light ions. Jack Miller In RBO--needs def from NCRP Glossary (https://ncrponline.org/wp-content/themes/ncrp/PDFs/NCRP-Composite-Glossary.pdf) @@ -4607,12 +4608,6 @@ - - - - - - - - - - - - - - - - - - - - - - - - - - - The quality of a environmental system process. - quality of environmental system process - environmental system process quality - - - - @@ -88385,7 +88357,7 @@ Note that this term is in the subset of terms that should not be used for direct Any process that modulates the frequency, rate or extent of blood circulation. GOC:TermGenie GOC:mr - GO_REF:0000058 + GO_REF:0000058 PMID:10659969 @@ -88441,7 +88413,7 @@ Note that this term is in the subset of terms that should not be used for direct Any process that stops, prevents or reduces the frequency, rate or extent of blood circulation. GOC:TermGenie GOC:mr - GO_REF:0000058 + GO_REF:0000058 PMID:10659969 @@ -88545,7 +88517,7 @@ Note that this term is in the subset of terms that should not be used for direct Any process that activates or increases the frequency, rate or extent of blood circulation. GOC:TermGenie GOC:mr - GO_REF:0000058 + GO_REF:0000058 PMID:10659969 @@ -88641,7 +88613,7 @@ Note that this term is in the subset of terms that should not be used for direct Any process that modulates the frequency, rate or extent of secretion by cell. GOC:TermGenie GOC:pm - GO_REF:0000058 + GO_REF:0000058 PMID:12130530 @@ -88698,7 +88670,7 @@ Note that this term is in the subset of terms that should not be used for direct Any process that stops, prevents or reduces the frequency, rate or extent of secretion by cell. GOC:TermGenie GOC:pm - GO_REF:0000058 + GO_REF:0000058 PMID:12130530 @@ -88803,7 +88775,7 @@ Note that this term is in the subset of terms that should not be used for direct Any process that activates or increases the frequency, rate or extent of secretion by cell. GOC:TermGenie GOC:pm - GO_REF:0000058 + GO_REF:0000058 PMID:12130530 @@ -88946,7 +88918,7 @@ Note that this term is in the subset of terms that should not be used for direct GOC:PARL GOC:TermGenie GOC:pad - GO_REF:0000058 + GO_REF:0000058 PMID:20080761 @@ -89039,7 +89011,7 @@ Note that this term is in the subset of terms that should not be used for direct GOC:PARL GOC:TermGenie GOC:pad - GO_REF:0000058 + GO_REF:0000058 PMID:20080761 @@ -89252,7 +89224,7 @@ Note that this term is in the subset of terms that should not be used for direct GOC:PARL GOC:TermGenie GOC:pad - GO_REF:0000058 + GO_REF:0000058 PMID:20080761 @@ -89440,7 +89412,7 @@ Note that this term is in the subset of terms that should not be used for direct Any process that stops, prevents or reduces the frequency, rate or extent of anion transport. GOC:TermGenie - GO_REF:0000058 + GO_REF:0000058 PMID:11336802 @@ -89508,7 +89480,7 @@ Note that this term is in the subset of terms that should not be used for direct Any process that activates or increases the frequency, rate or extent of anion transport. GOC:TermGenie - GO_REF:0000058 + GO_REF:0000058 PMID:11336802 @@ -89584,7 +89556,7 @@ Note that this term is in the subset of terms that should not be used for direct Any process that stops, prevents or reduces the frequency, rate or extent of a protein localization. GOC:TermGenie GOC:vw - GO_REF:0000058 + GO_REF:0000058 @@ -89687,7 +89659,7 @@ Note that this term is in the subset of terms that should not be used for direct Any process that activates or increases the frequency, rate or extent of a protein localization. GOC:TermGenie GOC:vw - GO_REF:0000058 + GO_REF:0000058 @@ -89772,7 +89744,7 @@ Note that this term is in the subset of terms that should not be used for direct Any process that stops, prevents or reduces the frequency, rate or extent of respiratory gaseous exchange. GOC:TermGenie - GO_REF:0000058 + GO_REF:0000058 PMID:22819705 @@ -89840,7 +89812,7 @@ Note that this term is in the subset of terms that should not be used for direct Any process that activates or increases the frequency, rate or extent of respiratory gaseous exchange. GOC:TermGenie - GO_REF:0000058 + GO_REF:0000058 PMID:22819705 @@ -89914,7 +89886,7 @@ Note that this term is in the subset of terms that should not be used for direct Any process that activates or increases the frequency, rate or extent of vasculature development. GOC:TermGenie - GO_REF:0000058 + GO_REF:0000058 PMID:21472453 @@ -90022,7 +89994,7 @@ Note that this term is in the subset of terms that should not be used for direct Any process that stops, prevents or reduces the frequency, rate or extent of sensory perception of pain. GOC:TermGenie - GO_REF:0000058 + GO_REF:0000058 PMID:17167094 @@ -90160,7 +90132,7 @@ Note that this term is in the subset of terms that should not be used for direct Any process that activates or increases the frequency, rate or extent of sensory perception of pain. GOC:TermGenie - GO_REF:0000058 + GO_REF:0000058 PMID:17167094 @@ -90287,7 +90259,7 @@ Note that this term is in the subset of terms that should not be used for direct Any process that modulates the frequency, rate or extent of bile acid metabolic process. GOC:TermGenie GOC:bf - GO_REF:0000058 + GO_REF:0000058 @@ -90344,7 +90316,7 @@ Note that this term is in the subset of terms that should not be used for direct Any process that stops, prevents or reduces the frequency, rate or extent of bile acid metabolic process. GOC:TermGenie GOC:bf - GO_REF:0000058 + GO_REF:0000058 @@ -90449,7 +90421,7 @@ Note that this term is in the subset of terms that should not be used for direct Any process that activates or increases the frequency, rate or extent of bile acid metabolic process. GOC:TermGenie GOC:bf - GO_REF:0000058 + GO_REF:0000058 @@ -90561,7 +90533,7 @@ Note that this term is in the subset of terms that should not be used for direct Any process that stops, prevents or reduces the frequency, rate or extent of establishment of protein localization. GOC:TermGenie - GO_REF:0000058 + GO_REF:0000058 PMID:22761445 @@ -90734,7 +90706,7 @@ Note that this term is in the subset of terms that should not be used for direct Any process that activates or increases the frequency, rate or extent of establishment of protein localization. GOC:TermGenie - GO_REF:0000058 + GO_REF:0000058 PMID:22761445 @@ -90890,7 +90862,7 @@ Note that this term is in the subset of terms that should not be used for direct Any process that modulates the frequency, rate or extent of epithelial tube formation. GOC:TermGenie GOC:bhm - GO_REF:0000058 + GO_REF:0000058 PMID:25745997 @@ -90937,7 +90909,7 @@ Note that this term is in the subset of terms that should not be used for direct Any process that stops, prevents or reduces the frequency, rate or extent of epithelial tube formation. GOC:TermGenie GOC:bhm - GO_REF:0000058 + GO_REF:0000058 PMID:25745997 @@ -91008,7 +90980,7 @@ Note that this term is in the subset of terms that should not be used for direct Any process that activates or increases the frequency, rate or extent of epithelial tube formation. GOC:TermGenie GOC:bhm - GO_REF:0000058 + GO_REF:0000058 PMID:25745997 @@ -91074,7 +91046,7 @@ Note that this term is in the subset of terms that should not be used for direct Any process that modulates the frequency, rate or extent of morphogenesis of an epithelium. GOC:TermGenie GOC:bhm - GO_REF:0000058 + GO_REF:0000058 PMID:25745997 @@ -91131,7 +91103,7 @@ Note that this term is in the subset of terms that should not be used for direct Any process that stops, prevents or reduces the frequency, rate or extent of morphogenesis of an epithelium. GOC:TermGenie GOC:bhm - GO_REF:0000058 + GO_REF:0000058 PMID:25745997 @@ -91236,7 +91208,7 @@ Note that this term is in the subset of terms that should not be used for direct Any process that activates or increases the frequency, rate or extent of morphogenesis of an epithelium. GOC:TermGenie GOC:bhm - GO_REF:0000058 + GO_REF:0000058 PMID:25745997 @@ -91335,7 +91307,7 @@ Note that this term is in the subset of terms that should not be used for direct GOC:BHF_telomere GOC:TermGenie GOC:nc - GO_REF:0000058 + GO_REF:0000058 PMID:23201774 @@ -91394,7 +91366,7 @@ Note that this term is in the subset of terms that should not be used for direct GOC:BHF_telomere GOC:TermGenie GOC:nc - GO_REF:0000058 + GO_REF:0000058 PMID:23201774 @@ -91501,7 +91473,7 @@ Note that this term is in the subset of terms that should not be used for direct GOC:BHF_telomere GOC:TermGenie GOC:nc - GO_REF:0000058 + GO_REF:0000058 PMID:23201774 @@ -91709,95 +91681,95 @@ Note that this term is in the subset of terms that should not be used for direct - - down regulation of cellular response to gamma radiation + + down regulation of cellular response to gamma-ray photon GOC:TermGenie - - down-regulation of cellular response to gamma radiation + + down-regulation of cellular response to gamma ray GOC:TermGenie - - downregulation of cellular response to gamma radiation + + down-regulation of cellular response to gamma-ray photon GOC:TermGenie - - inhibition of cellular response to gamma radiation + + downregulation of cellular response to gamma ray GOC:TermGenie - down regulation of cellular response to gamma ray + downregulation of cellular response to gamma-ray photon GOC:TermGenie - down regulation of cellular response to gamma-ray photon + inhibition of cellular response to gamma ray GOC:TermGenie - down-regulation of cellular response to gamma ray + inhibition of cellular response to gamma-ray photon GOC:TermGenie - down-regulation of cellular response to gamma-ray photon + negative regulation of cellular response to gamma ray GOC:TermGenie - downregulation of cellular response to gamma ray + negative regulation of cellular response to gamma-ray photon GOC:TermGenie - - downregulation of cellular response to gamma-ray photon + + Any process that stops, prevents or reduces the frequency, rate or extent of cellular response to gamma radiation. GOC:TermGenie + GO_REF:0000058 + PMID:23505386 - - inhibition of cellular response to gamma ray + + down regulation of cellular response to gamma radiation GOC:TermGenie - - inhibition of cellular response to gamma-ray photon + + down-regulation of cellular response to gamma radiation GOC:TermGenie - - negative regulation of cellular response to gamma ray + + downregulation of cellular response to gamma radiation GOC:TermGenie - - negative regulation of cellular response to gamma-ray photon + + inhibition of cellular response to gamma radiation GOC:TermGenie - - Any process that stops, prevents or reduces the frequency, rate or extent of cellular response to gamma radiation. + + down regulation of cellular response to gamma ray GOC:TermGenie - GO_REF:0000058 - PMID:23505386 @@ -91977,7 +91949,7 @@ Note that this term is in the subset of terms that should not be used for direct GOC:BHF_miRNA GOC:TermGenie GOC:rph - GO_REF:0000058 + GO_REF:0000058 PMID:23939491 @@ -92024,7 +91996,7 @@ Note that this term is in the subset of terms that should not be used for direct GOC:BHF_miRNA GOC:TermGenie GOC:rph - GO_REF:0000058 + GO_REF:0000058 PMID:23939491 @@ -92095,7 +92067,7 @@ Note that this term is in the subset of terms that should not be used for direct GOC:BHF_miRNA GOC:TermGenie GOC:rph - GO_REF:0000058 + GO_REF:0000058 PMID:23939491 @@ -92159,7 +92131,7 @@ Note that this term is in the subset of terms that should not be used for direct Any process that modulates the frequency, rate or extent of lipid localization. GOC:TermGenie - GO_REF:0000058 + GO_REF:0000058 PMID:17564681 @@ -92214,7 +92186,7 @@ Note that this term is in the subset of terms that should not be used for direct Any process that stops, prevents or reduces the frequency, rate or extent of lipid localization. GOC:TermGenie - GO_REF:0000058 + GO_REF:0000058 PMID:17564681 @@ -92317,7 +92289,7 @@ Note that this term is in the subset of terms that should not be used for direct Any process that activates or increases the frequency, rate or extent of lipid localization. GOC:TermGenie - GO_REF:0000058 + GO_REF:0000058 PMID:17564681 @@ -94787,21 +94759,21 @@ clustering algorithm. GC_ID:1 ncbi_taxonomy - all + all NCBITaxon:1 root - all - + all + - all - + all + @@ -112506,7 +112478,8 @@ Classes for population already exist in IDO ('organism population', I - + + An atomic nucleus, fully stripped of its orbital electrons, containing 2 or more protons. Nuclei containing between 2 protons (helium) and 6 protons (carbon) are sometimes referred to as light ions. Jack Miller In RBO--needs def from NCRP Glossary (https://ncrponline.org/wp-content/themes/ncrp/PDFs/NCRP-Composite-Glossary.pdf) @@ -143813,7 +143786,7 @@ Classes for population already exist in IDO ('organism population', I - BTO + BTO @@ -144034,7 +144007,7 @@ Classes for population already exist in IDO ('organism population', I - BTO + BTO @@ -149758,7 +149731,7 @@ Classes for population already exist in IDO ('organism population', I - BTO + BTO FMA-implicit VHOG ZFA @@ -158275,7 +158248,7 @@ Classes for population already exist in IDO ('organism population', I - BTO + BTO EHDAA2 GO-def @@ -158639,7 +158612,7 @@ Classes for population already exist in IDO ('organism population', I - BTO + BTO @@ -163611,7 +163584,7 @@ Classes for population already exist in IDO ('organism population', I - BTO + BTO @@ -228073,7 +228046,7 @@ Classes for population already exist in IDO ('organism population', I - BTO + BTO @@ -269996,12 +269969,6 @@ Classes for population already exist in IDO ('organism population', I - - - - - - @@ -275150,8 +275117,8 @@ The CBA/J inbred mouse strain is used to study granulomatous experimental autoim m A length unit which is equal to the length of the path traveled by light in vacuum during a time interval of 1/299 792 458 of a second. - m meter + m metre "A length unit which is equal to the length of the path traveled by light in vacuum during a time interval of 1/299 792 458 of a second." [BIPM:BIPM, NIST:NIST] @@ -275165,8 +275132,8 @@ The CBA/J inbred mouse strain is used to study granulomatous experimental autoim A mass unit which is equal to the mass of the International Prototype Kilogram kept by the BIPM at Svres, France. - s + s second sec @@ -275188,8 +275155,8 @@ The CBA/J inbred mouse strain is used to study granulomatous experimental autoim A length unit which is equal to one thousandth of a meter or 10^[-3] m. mm micrometre - millimeter + mm millimeter "A length unit which is equal to one thousandth of a meter or 10^[-3] m." [NIST:NIST] @@ -275207,13 +275174,13 @@ The CBA/J inbred mouse strain is used to study granulomatous experimental autoim nm - nanometer nm + nanometer A length unit which is equal to one thousandth of one millionth of a meter or 10^[-9] m. nanometre nanometer - "A length unit which is equal to one thousandth of one millionth of a meter or 10^[-9] m." [NIST:NIST] + Å @@ -275237,8 +275204,8 @@ The CBA/J inbred mouse strain is used to study granulomatous experimental autoim milligram A mass unit which is equal to one thousandth of a gram or 10^[-3] g. mg - "A mass unit which is equal to one thousandth of a gram or 10^[-3] g." [UOC:GVG] mg + "A mass unit which is equal to one thousandth of a gram or 10^[-3] g." [UOC:GVG] milligram @@ -275255,8 +275222,8 @@ The CBA/J inbred mouse strain is used to study granulomatous experimental autoim nanogram ng - nanogram "A mass unit which is equal to one thousandth of one millionth of a gram or 10^[-9] g." [UOC:GVG] + nanogram ng @@ -275308,8 +275275,8 @@ The CBA/J inbred mouse strain is used to study granulomatous experimental autoim week "A time unit which is equal to 7 days." [Wikipedia:Wikipedia] - week A time unit which is equal to 7 days. + week @@ -275326,8 +275293,8 @@ The CBA/J inbred mouse strain is used to study granulomatous experimental autoim - "A substance unit equal to a millionth of a mol or 10^[-6] mol." [NIST:NIST] micromole + "A substance unit equal to a millionth of a mol or 10^[-6] mol." [NIST:NIST] umol A substance unit equal to a millionth of a mol or 10^[-6] mol. @@ -275345,36 +275312,36 @@ The CBA/J inbred mouse strain is used to study granulomatous experimental autoim pmol - "A substance unit equal to 10^[-12] mol." [NIST:NIST] pmol + "A substance unit equal to 10^[-12] mol." [NIST:NIST] A substance unit equal to 10^[-12] mol. - picomole picomole + picomole M "A unit of concentration which expresses a concentration of 1 mole of solute per liter of solution (mol/L)." [UOC:GVG] A unit of concentration which expresses a concentration of 1 mole of solute per liter of solution (mol/L). molar - M + M molar A unit of molarity which is equal to one thousandth of a molar or 10^[-3] M. - mM millimolar + mM - millimolar mM + millimolar "A unit of molarity which is equal to one thousandth of a molar or 10^[-3] M." [UOC:GVG] - uM micromolar - A unit of molarity which is equal to one millionth of a molar or 10^[-6] M. + uM uM + A unit of molarity which is equal to one millionth of a molar or 10^[-6] M. micromolar "A unit of molarity which is equal to one millionth of a molar or 10^[-6] M." [UOC:GVG] @@ -275393,8 +275360,8 @@ The CBA/J inbred mouse strain is used to study granulomatous experimental autoim picomolar "A unit of molarity which is equal to 10^[-12] M." [UOC:GVG] picomolar - pM A unit of molarity which is equal to 10^[-12] M. + pM @@ -275412,8 +275379,8 @@ The CBA/J inbred mouse strain is used to study granulomatous experimental autoim "A volume unit which is equal to one thousandth of a liter or 10^[-3] L, or to 1 cubic centimeter." [NIST:NIST] milliliter ml - millilitre + A volume unit which is equal to one thousandth of a liter or 10^[-3] L, or to 1 cubic centimeter. ml milliliter @@ -275424,8 +275391,8 @@ The CBA/J inbred mouse strain is used to study granulomatous experimental autoim L A volume unit which is equal to one thousandth of a cubic meter or 10^[-3] m^[3], or to 1 decimeter. - liter "A volume unit which is equal to one thousandth of a cubic meter or 10^[-3] m^[3], or to 1 decimeter." [NIST:NIST] + liter L liter @@ -275442,15 +275409,15 @@ The CBA/J inbred mouse strain is used to study granulomatous experimental autoim microliter microliter ul - A volume unit which is equal to one millionth of a liter or 10^[-6] L. microlitre + A volume unit which is equal to one millionth of a liter or 10^[-6] L. ul "A volume unit which is equal to one millionth of a liter or 10^[-6] L." [NIST:NIST] - nl A volume unit which is equal to one thousandth of one millionth of a liter or 10^[-9] L. + nl nanoliter "A volume unit which is equal to one thousandth of one millionth of a liter or 10^[-9] L." [NIST:NIST] @@ -275472,8 +275439,8 @@ The CBA/J inbred mouse strain is used to study granulomatous experimental autoim hertz Hz - A frequency unit which is equal to 1 complete cycle of a recurring phenomenon in 1 second. "A frequency unit which is equal to 1 complete cycle of a recurring phenomenon in 1 second." [NIST:NIST] + A frequency unit which is equal to 1 complete cycle of a recurring phenomenon in 1 second. hertz s^1 @@ -275496,8 +275463,8 @@ The CBA/J inbred mouse strain is used to study granulomatous experimental autoim mass volume percentage weight-volume percentage percent vol per vol - "A dimensionless concentration unit which denotes the mass of the substance in a mixture as a percentage of the volume of the entire mixture." [UOC:GVG] (w/v) + "A dimensionless concentration unit which denotes the mass of the substance in a mixture as a percentage of the volume of the entire mixture." [UOC:GVG] % v/v @@ -275543,8 +275510,8 @@ The CBA/J inbred mouse strain is used to study granulomatous experimental autoim pH A dimensionless concentration notation which denotes the acidity of a solution in terms of activity of hydrogen ions (H+). - "A dimensionless concentration notation which denotes the acidity of a solution in terms of activity of hydrogen ions (H+)." [Wikipedia:Wikipedia] pH + "A dimensionless concentration notation which denotes the acidity of a solution in terms of activity of hydrogen ions (H+)." [Wikipedia:Wikipedia] ml/l @@ -275558,18 +275525,18 @@ The CBA/J inbred mouse strain is used to study granulomatous experimental autoim milliliter per liter - "A mass density unit which is equal to mass of an object in grams divided by the volume in deciliters." [UOC:GVG] gram per deciliter + "A mass density unit which is equal to mass of an object in grams divided by the volume in deciliters." [UOC:GVG] g/dl gram per decilitre - gram per deciliter A mass density unit which is equal to mass of an object in grams divided by the volume in deciliters. + gram per deciliter g/dl - colony forming unit per volume + colony forming unit per volume colony forming unit per volume "A concentration unit which a measure of viable bacterial numbers in a given volume." [Wikipedia:Wikipedia] A concentration unit which a measure of viable bacterial numbers in a given volume. @@ -275601,30 +275568,30 @@ The CBA/J inbred mouse strain is used to study granulomatous experimental autoim A rate unit which is equal to one over one nanomolar. - 1/nM "A rate unit which is equal to one over one nanomolar." [UO:GVG] + 1/nM - count per nanomolar count per nanomolar + count per nanomolar nM^-1 count per molar 1/M - A rate unit which is equal to one over one molar. count per molar + A rate unit which is equal to one over one molar. "A rate unit which is equal to one over one molar." [UO:GVG] M^-1 - A mass unit density which is equal to mass of an object in micrograms divided by the volume in liters. "A mass unit density which is equal to mass of an object in micrograms divided by the volume in liters." [UOC:GVG] + A mass unit density which is equal to mass of an object in micrograms divided by the volume in liters. ug/L microgram per litre - microgram per liter ng/ml + microgram per liter ug/L microgram per liter diff --git a/rbo.owl b/rbo.owl index d41f16e..796762f 100644 --- a/rbo.owl +++ b/rbo.owl @@ -32,11 +32,11 @@ xmlns:ncbitaxon="http://purl.obolibrary.org/obo/ncbitaxon#" xmlns:oboInOwl1="oboInOwl:"> - + RBO is an ontology for the effects of radiation on biota in terrestrial and space environments. Radiation Biology Ontology - 2024-01-17 + 2024-01-18 @@ -62732,34 +62732,6 @@ consider revising 'pond' semantics - - - - - - - - - - - - - - - - - - - - - - The quality of a environmental system process. - quality of environmental system process - environmental system process quality - - - - @@ -70999,7 +70971,7 @@ Any process that is carried out at the cellular level, but not necessarily restr The directed movement of organic anions into, out of or within a cell, or between cells, by means of some agent such as a transporter or pore. Organic anions are atoms or small molecules with a negative charge which contain carbon in covalent linkage. GOC:ai - GOC:krc + GOC:krc @@ -71017,7 +70989,7 @@ Any process that is carried out at the cellular level, but not necessarily restr The directed movement of monocarboxylic acids into, out of or within a cell, or between cells, by means of some agent such as a transporter or pore. - GOC:krc + GOC:krc @@ -71041,7 +71013,7 @@ Any process that is carried out at the cellular level, but not necessarily restr The directed movement of bile acid and bile salts into, out of or within a cell, or between cells, by means of some agent such as a transporter or pore. GOC:dph - GOC:krc + GOC:krc PMID:12663868 PMID:14699511 @@ -72137,7 +72109,7 @@ Any process that is carried out at the cellular level, but not necessarily restr A reproduction process that creates a new organism by combining the genetic material of two gametes, which may come from two organisms or from a single organism, in the case of self-fertilizing hermaphrodites, e.g. C. elegans, or self-fertilization in plants. It occurs both in eukaryotes and prokaryotes: in multicellular eukaryotic organisms, an individual is created anew; in prokaryotes, the initial cell has additional or transformed genetic material. In a process called genetic recombination, genetic material (DNA) originating from two gametes join up so that homologous sequences are aligned with each other, and this is followed by exchange of genetic information. After the new recombinant chromosome is formed, it is passed on to progeny. GOC:jl GOC:kmv - GOC:krc + GOC:krc GOC:tb ISBN:0387520546 Wikipedia:Sexual_reproduction @@ -74578,7 +74550,7 @@ Any process that is carried out at the cellular level, but not necessarily restr All of the contents of a plasma membrane bounded cell projection, excluding the plasma membrane surrounding the projection. - GOC:krc + GOC:krc GOC:mah @@ -88381,7 +88353,7 @@ Note that this term is in the subset of terms that should not be used for direct Any process that modulates the frequency, rate or extent of blood circulation. GOC:TermGenie GOC:mr - GO_REF:0000058 + GO_REF:0000058 PMID:10659969 @@ -88437,7 +88409,7 @@ Note that this term is in the subset of terms that should not be used for direct Any process that stops, prevents or reduces the frequency, rate or extent of blood circulation. GOC:TermGenie GOC:mr - GO_REF:0000058 + GO_REF:0000058 PMID:10659969 @@ -88541,7 +88513,7 @@ Note that this term is in the subset of terms that should not be used for direct Any process that activates or increases the frequency, rate or extent of blood circulation. GOC:TermGenie GOC:mr - GO_REF:0000058 + GO_REF:0000058 PMID:10659969 @@ -88637,7 +88609,7 @@ Note that this term is in the subset of terms that should not be used for direct Any process that modulates the frequency, rate or extent of secretion by cell. GOC:TermGenie GOC:pm - GO_REF:0000058 + GO_REF:0000058 PMID:12130530 @@ -88694,7 +88666,7 @@ Note that this term is in the subset of terms that should not be used for direct Any process that stops, prevents or reduces the frequency, rate or extent of secretion by cell. GOC:TermGenie GOC:pm - GO_REF:0000058 + GO_REF:0000058 PMID:12130530 @@ -88799,7 +88771,7 @@ Note that this term is in the subset of terms that should not be used for direct Any process that activates or increases the frequency, rate or extent of secretion by cell. GOC:TermGenie GOC:pm - GO_REF:0000058 + GO_REF:0000058 PMID:12130530 @@ -88942,7 +88914,7 @@ Note that this term is in the subset of terms that should not be used for direct GOC:PARL GOC:TermGenie GOC:pad - GO_REF:0000058 + GO_REF:0000058 PMID:20080761 @@ -89035,7 +89007,7 @@ Note that this term is in the subset of terms that should not be used for direct GOC:PARL GOC:TermGenie GOC:pad - GO_REF:0000058 + GO_REF:0000058 PMID:20080761 @@ -89248,7 +89220,7 @@ Note that this term is in the subset of terms that should not be used for direct GOC:PARL GOC:TermGenie GOC:pad - GO_REF:0000058 + GO_REF:0000058 PMID:20080761 @@ -89436,7 +89408,7 @@ Note that this term is in the subset of terms that should not be used for direct Any process that stops, prevents or reduces the frequency, rate or extent of anion transport. GOC:TermGenie - GO_REF:0000058 + GO_REF:0000058 PMID:11336802 @@ -89504,7 +89476,7 @@ Note that this term is in the subset of terms that should not be used for direct Any process that activates or increases the frequency, rate or extent of anion transport. GOC:TermGenie - GO_REF:0000058 + GO_REF:0000058 PMID:11336802 @@ -89580,7 +89552,7 @@ Note that this term is in the subset of terms that should not be used for direct Any process that stops, prevents or reduces the frequency, rate or extent of a protein localization. GOC:TermGenie GOC:vw - GO_REF:0000058 + GO_REF:0000058 @@ -89683,7 +89655,7 @@ Note that this term is in the subset of terms that should not be used for direct Any process that activates or increases the frequency, rate or extent of a protein localization. GOC:TermGenie GOC:vw - GO_REF:0000058 + GO_REF:0000058 @@ -89768,7 +89740,7 @@ Note that this term is in the subset of terms that should not be used for direct Any process that stops, prevents or reduces the frequency, rate or extent of respiratory gaseous exchange. GOC:TermGenie - GO_REF:0000058 + GO_REF:0000058 PMID:22819705 @@ -89836,7 +89808,7 @@ Note that this term is in the subset of terms that should not be used for direct Any process that activates or increases the frequency, rate or extent of respiratory gaseous exchange. GOC:TermGenie - GO_REF:0000058 + GO_REF:0000058 PMID:22819705 @@ -89910,7 +89882,7 @@ Note that this term is in the subset of terms that should not be used for direct Any process that activates or increases the frequency, rate or extent of vasculature development. GOC:TermGenie - GO_REF:0000058 + GO_REF:0000058 PMID:21472453 @@ -90018,7 +89990,7 @@ Note that this term is in the subset of terms that should not be used for direct Any process that stops, prevents or reduces the frequency, rate or extent of sensory perception of pain. GOC:TermGenie - GO_REF:0000058 + GO_REF:0000058 PMID:17167094 @@ -90156,7 +90128,7 @@ Note that this term is in the subset of terms that should not be used for direct Any process that activates or increases the frequency, rate or extent of sensory perception of pain. GOC:TermGenie - GO_REF:0000058 + GO_REF:0000058 PMID:17167094 @@ -90283,7 +90255,7 @@ Note that this term is in the subset of terms that should not be used for direct Any process that modulates the frequency, rate or extent of bile acid metabolic process. GOC:TermGenie GOC:bf - GO_REF:0000058 + GO_REF:0000058 @@ -90340,7 +90312,7 @@ Note that this term is in the subset of terms that should not be used for direct Any process that stops, prevents or reduces the frequency, rate or extent of bile acid metabolic process. GOC:TermGenie GOC:bf - GO_REF:0000058 + GO_REF:0000058 @@ -90445,7 +90417,7 @@ Note that this term is in the subset of terms that should not be used for direct Any process that activates or increases the frequency, rate or extent of bile acid metabolic process. GOC:TermGenie GOC:bf - GO_REF:0000058 + GO_REF:0000058 @@ -90557,7 +90529,7 @@ Note that this term is in the subset of terms that should not be used for direct Any process that stops, prevents or reduces the frequency, rate or extent of establishment of protein localization. GOC:TermGenie - GO_REF:0000058 + GO_REF:0000058 PMID:22761445 @@ -90730,7 +90702,7 @@ Note that this term is in the subset of terms that should not be used for direct Any process that activates or increases the frequency, rate or extent of establishment of protein localization. GOC:TermGenie - GO_REF:0000058 + GO_REF:0000058 PMID:22761445 @@ -90886,7 +90858,7 @@ Note that this term is in the subset of terms that should not be used for direct Any process that modulates the frequency, rate or extent of epithelial tube formation. GOC:TermGenie GOC:bhm - GO_REF:0000058 + GO_REF:0000058 PMID:25745997 @@ -90933,7 +90905,7 @@ Note that this term is in the subset of terms that should not be used for direct Any process that stops, prevents or reduces the frequency, rate or extent of epithelial tube formation. GOC:TermGenie GOC:bhm - GO_REF:0000058 + GO_REF:0000058 PMID:25745997 @@ -91004,7 +90976,7 @@ Note that this term is in the subset of terms that should not be used for direct Any process that activates or increases the frequency, rate or extent of epithelial tube formation. GOC:TermGenie GOC:bhm - GO_REF:0000058 + GO_REF:0000058 PMID:25745997 @@ -91070,7 +91042,7 @@ Note that this term is in the subset of terms that should not be used for direct Any process that modulates the frequency, rate or extent of morphogenesis of an epithelium. GOC:TermGenie GOC:bhm - GO_REF:0000058 + GO_REF:0000058 PMID:25745997 @@ -91127,7 +91099,7 @@ Note that this term is in the subset of terms that should not be used for direct Any process that stops, prevents or reduces the frequency, rate or extent of morphogenesis of an epithelium. GOC:TermGenie GOC:bhm - GO_REF:0000058 + GO_REF:0000058 PMID:25745997 @@ -91232,7 +91204,7 @@ Note that this term is in the subset of terms that should not be used for direct Any process that activates or increases the frequency, rate or extent of morphogenesis of an epithelium. GOC:TermGenie GOC:bhm - GO_REF:0000058 + GO_REF:0000058 PMID:25745997 @@ -91331,7 +91303,7 @@ Note that this term is in the subset of terms that should not be used for direct GOC:BHF_telomere GOC:TermGenie GOC:nc - GO_REF:0000058 + GO_REF:0000058 PMID:23201774 @@ -91390,7 +91362,7 @@ Note that this term is in the subset of terms that should not be used for direct GOC:BHF_telomere GOC:TermGenie GOC:nc - GO_REF:0000058 + GO_REF:0000058 PMID:23201774 @@ -91497,7 +91469,7 @@ Note that this term is in the subset of terms that should not be used for direct GOC:BHF_telomere GOC:TermGenie GOC:nc - GO_REF:0000058 + GO_REF:0000058 PMID:23201774 @@ -91636,18 +91608,12 @@ Note that this term is in the subset of terms that should not be used for direct GO:1905843 regulation of cellular response to gamma radiation - - - - regulation of cellular response to gamma-ray photon - GOC:TermGenie - Any process that modulates the frequency, rate or extent of cellular response to gamma radiation. GOC:TermGenie - GO_REF:0000058 + GO_REF:0000058 PMID:23505386 @@ -91656,6 +91622,12 @@ Note that this term is in the subset of terms that should not be used for direct regulation of cellular response to gamma ray GOC:TermGenie + + + + regulation of cellular response to gamma-ray photon + GOC:TermGenie + @@ -91708,7 +91680,7 @@ Note that this term is in the subset of terms that should not be used for direct Any process that stops, prevents or reduces the frequency, rate or extent of cellular response to gamma radiation. GOC:TermGenie - GO_REF:0000058 + GO_REF:0000058 PMID:23505386 @@ -91847,7 +91819,7 @@ Note that this term is in the subset of terms that should not be used for direct Any process that activates or increases the frequency, rate or extent of cellular response to gamma radiation. GOC:TermGenie - GO_REF:0000058 + GO_REF:0000058 PMID:23505386 @@ -91973,7 +91945,7 @@ Note that this term is in the subset of terms that should not be used for direct GOC:BHF_miRNA GOC:TermGenie GOC:rph - GO_REF:0000058 + GO_REF:0000058 PMID:23939491 @@ -92020,7 +91992,7 @@ Note that this term is in the subset of terms that should not be used for direct GOC:BHF_miRNA GOC:TermGenie GOC:rph - GO_REF:0000058 + GO_REF:0000058 PMID:23939491 @@ -92091,7 +92063,7 @@ Note that this term is in the subset of terms that should not be used for direct GOC:BHF_miRNA GOC:TermGenie GOC:rph - GO_REF:0000058 + GO_REF:0000058 PMID:23939491 @@ -92155,7 +92127,7 @@ Note that this term is in the subset of terms that should not be used for direct Any process that modulates the frequency, rate or extent of lipid localization. GOC:TermGenie - GO_REF:0000058 + GO_REF:0000058 PMID:17564681 @@ -92210,7 +92182,7 @@ Note that this term is in the subset of terms that should not be used for direct Any process that stops, prevents or reduces the frequency, rate or extent of lipid localization. GOC:TermGenie - GO_REF:0000058 + GO_REF:0000058 PMID:17564681 @@ -92313,7 +92285,7 @@ Note that this term is in the subset of terms that should not be used for direct Any process that activates or increases the frequency, rate or extent of lipid localization. GOC:TermGenie - GO_REF:0000058 + GO_REF:0000058 PMID:17564681 @@ -94783,20 +94755,20 @@ clustering algorithm. GC_ID:1 ncbi_taxonomy - all + all NCBITaxon:1 root - all + all - all + all @@ -112502,7 +112474,8 @@ Classes for population already exist in IDO ('organism population', I - + + An atomic nucleus, fully stripped of its orbital electrons, containing 2 or more protons. Nuclei containing between 2 protons (helium) and 6 protons (carbon) are sometimes referred to as light ions. Jack Miller In RBO--needs def from NCRP Glossary (https://ncrponline.org/wp-content/themes/ncrp/PDFs/NCRP-Composite-Glossary.pdf) @@ -133877,7 +133850,7 @@ Classes for population already exist in IDO ('organism population', I Tissue which consists of skeletal muscle fibers surrounded by endomysium. Examples: Skeletal muscle tissue of biceps, Skeletal muscle tissue of diaphragm[FMA] FMA:14069 - FMA + FMA @@ -163589,7 +163562,7 @@ Classes for population already exist in IDO ('organism population', I - BTO + BTO @@ -200466,7 +200439,7 @@ Classes for population already exist in IDO ('organism population', I Subdivision of cardiovascular system which has as its parts the right side of heart, the superior vena cava and the inferior vena cava[FMA] - FMA + FMA FMA:45626 @@ -269656,12 +269629,6 @@ Classes for population already exist in IDO ('organism population', I - - - - - - @@ -274810,8 +274777,8 @@ The CBA/J inbred mouse strain is used to study granulomatous experimental autoim m A length unit which is equal to the length of the path traveled by light in vacuum during a time interval of 1/299 792 458 of a second. - m meter + m metre "A length unit which is equal to the length of the path traveled by light in vacuum during a time interval of 1/299 792 458 of a second." [BIPM:BIPM, NIST:NIST] @@ -274838,8 +274805,8 @@ The CBA/J inbred mouse strain is used to study granulomatous experimental autoim cm centimeter centimetre - cm centimeter + cm "A length unit which is equal to one hundredth of a meter or 10^[-2] m." [NIST:NIST] A length unit which is equal to one hundredth of a meter or 10^[-2] m. @@ -274857,8 +274824,8 @@ The CBA/J inbred mouse strain is used to study granulomatous experimental autoim micrometer micron - "A length unit which is equal to one millionth of a meter or 10^[-6] m." [NIST:NIST] micrometre + "A length unit which is equal to one millionth of a meter or 10^[-6] m." [NIST:NIST] um micrometer A length unit which is equal to one millionth of a meter or 10^[-6] m. @@ -274867,18 +274834,18 @@ The CBA/J inbred mouse strain is used to study granulomatous experimental autoim nm - nanometer nm + nanometer A length unit which is equal to one thousandth of one millionth of a meter or 10^[-9] m. nanometre nanometer - "A length unit which is equal to one thousandth of one millionth of a meter or 10^[-9] m." [NIST:NIST] + "A length unit which is equal to one thousandth of one millionth of a meter or 10^[-9] m." [NIST:NIST] Å - angstrom angstrom + angstrom "A length unit which is equal to 10 [-10] m." [NIST:NIST] A length unit which is equal to 10 [-10] m. @@ -274897,8 +274864,8 @@ The CBA/J inbred mouse strain is used to study granulomatous experimental autoim milligram A mass unit which is equal to one thousandth of a gram or 10^[-3] g. mg - mg "A mass unit which is equal to one thousandth of a gram or 10^[-3] g." [UOC:GVG] + mg milligram @@ -274933,8 +274900,8 @@ The CBA/J inbred mouse strain is used to study granulomatous experimental autoim "A temperature unit which is equal to one kelvin degree. However, they have their zeros at different points. The centigrade scale has its zero at 273.15 K." [NIST:NIST] degree C A temperature unit which is equal to one kelvin degree. However, they have their zeros at different points. The centigrade scale has its zero at 273.15 K. - C + C degree Celsius @@ -274958,8 +274925,8 @@ The CBA/J inbred mouse strain is used to study granulomatous experimental autoim "A time unit which is equal to 3600 seconds or 60 minutes." [Wikipedia:Wikipedia] - day + day "A time unit which is equal to 24 hours." [Wikipedia:Wikipedia] A time unit which is equal to 24 hours. day @@ -274980,8 +274947,8 @@ The CBA/J inbred mouse strain is used to study granulomatous experimental autoim year - A time unit which is equal to 12 months which is science is taken to be equal to 365.25 days. "A time unit which is equal to 12 months which in science is taken to be equal to 365.25 days." [Wikipedia:Wikipedia] + A time unit which is equal to 12 months which is science is taken to be equal to 365.25 days. year @@ -275009,30 +274976,30 @@ The CBA/J inbred mouse strain is used to study granulomatous experimental autoim "A substance unit equal to 10^[-12] mol." [NIST:NIST] A substance unit equal to 10^[-12] mol. - picomole picomole + picomole M "A unit of concentration which expresses a concentration of 1 mole of solute per liter of solution (mol/L)." [UOC:GVG] A unit of concentration which expresses a concentration of 1 mole of solute per liter of solution (mol/L). - M - molar + molar + M molar A unit of molarity which is equal to one thousandth of a molar or 10^[-3] M. millimolar mM - millimolar + mM "A unit of molarity which is equal to one thousandth of a molar or 10^[-3] M." [UOC:GVG] - uM micromolar + uM A unit of molarity which is equal to one millionth of a molar or 10^[-6] M. uM @@ -275053,9 +275020,9 @@ The CBA/J inbred mouse strain is used to study granulomatous experimental autoim picomolar "A unit of molarity which is equal to 10^[-12] M." [UOC:GVG] picomolar - - A unit of molarity which is equal to 10^[-12] M. pM + A unit of molarity which is equal to 10^[-12] M. + cubic centimeter @@ -275080,8 +275047,8 @@ The CBA/J inbred mouse strain is used to study granulomatous experimental autoim litre - L l + L A volume unit which is equal to one thousandth of a cubic meter or 10^[-3] m^[3], or to 1 decimeter. liter @@ -275095,12 +275062,12 @@ The CBA/J inbred mouse strain is used to study granulomatous experimental autoim cubic decimeter cubic decimetre A volume unit which is equal to one thousand of a cubic meter or 10^[-3] m^[3], or to 1 L. - cubic decimeter + cubic decimeter - microliter microliter + microliter ul microlitre A volume unit which is equal to one millionth of a liter or 10^[-6] L. @@ -275132,8 +275099,8 @@ The CBA/J inbred mouse strain is used to study granulomatous experimental autoim hertz Hz - "A frequency unit which is equal to 1 complete cycle of a recurring phenomenon in 1 second." [NIST:NIST] A frequency unit which is equal to 1 complete cycle of a recurring phenomenon in 1 second. + "A frequency unit which is equal to 1 complete cycle of a recurring phenomenon in 1 second." [NIST:NIST] hertz s^1 @@ -275160,8 +275127,8 @@ The CBA/J inbred mouse strain is used to study granulomatous experimental autoim "A dimensionless concentration unit which denotes the mass of the substance in a mixture as a percentage of the volume of the entire mixture." [UOC:GVG] - volume percentage % v/v + volume percentage % (v/v) "A dimensionless concentration unit which denotes the volume of the solute in mL per 100 mL of the resulting solution." [UOC:GVG] @@ -275176,8 +275143,8 @@ The CBA/J inbred mouse strain is used to study granulomatous experimental autoim gram per liter "A mass unit density which is equal to mass of an object in grams divided by the volume in liters." [UOC:GVG] gram per liter - g/L + g/L @@ -275185,8 +275152,8 @@ The CBA/J inbred mouse strain is used to study granulomatous experimental autoim "A mass unit density which is equal to mass of an object in milligrams divided by the volume in milliliters." [UOC:GVG] milligram per milliliter mg per ml - milligram per milliliter A mass unit density which is equal to mass of an object in milligrams divided by the volume in milliliters. + milligram per milliliter milligram per millilitre mg/ml @@ -275218,21 +275185,21 @@ The CBA/J inbred mouse strain is used to study granulomatous experimental autoim milliliter per liter - gram per deciliter "A mass density unit which is equal to mass of an object in grams divided by the volume in deciliters." [UOC:GVG] + gram per deciliter g/dl gram per decilitre gram per deciliter - A mass density unit which is equal to mass of an object in grams divided by the volume in deciliters. + A mass density unit which is equal to mass of an object in grams divided by the volume in deciliters. g/dl colony forming unit per volume colony forming unit per volume - "A concentration unit which a measure of viable bacterial numbers in a given volume." [Wikipedia:Wikipedia] A concentration unit which a measure of viable bacterial numbers in a given volume. + "A concentration unit which a measure of viable bacterial numbers in a given volume." [Wikipedia:Wikipedia] @@ -275261,8 +275228,8 @@ The CBA/J inbred mouse strain is used to study granulomatous experimental autoim A rate unit which is equal to one over one nanomolar. - 1/nM "A rate unit which is equal to one over one nanomolar." [UO:GVG] + 1/nM count per nanomolar count per nanomolar diff --git a/src/ontology/components/all_templates.owl b/src/ontology/components/all_templates.owl index 4fc331d..51dd2b8 100644 --- a/src/ontology/components/all_templates.owl +++ b/src/ontology/components/all_templates.owl @@ -9,7 +9,7 @@ xmlns:rdfs="http://www.w3.org/2000/01/rdf-schema#" xmlns:oboInOwl="http://www.geneontology.org/formats/oboInOwl#"> - + @@ -4119,7 +4119,8 @@ - + + An atomic nucleus, fully stripped of its orbital electrons, containing 2 or more protons. Nuclei containing between 2 protons (helium) and 6 protons (carbon) are sometimes referred to as light ions. Jack Miller In RBO--needs def from NCRP Glossary (https://ncrponline.org/wp-content/themes/ncrp/PDFs/NCRP-Composite-Glossary.pdf) @@ -4269,12 +4270,6 @@ - - - - - - - + + An atomic nucleus, fully stripped of its orbital electrons, containing 2 or more protons. Nuclei containing between 2 protons (helium) and 6 protons (carbon) are sometimes referred to as light ions. Jack Miller In RBO--needs def from NCRP Glossary (https://ncrponline.org/wp-content/themes/ncrp/PDFs/NCRP-Composite-Glossary.pdf) @@ -3913,12 +3914,6 @@ - - - - - - diff --git a/src/templates/RBO_individuals.tsv b/src/templates/RBO_individuals.tsv index efa58c8..33d2d11 100644 --- a/src/templates/RBO_individuals.tsv +++ b/src/templates/RBO_individuals.tsv @@ -9,10 +9,10 @@ obo:RBO_00000036 Space Shuttle An instance of a reusable spacecraft designed obo:RBO_00000037 Bion-M1 "An instance of a Russian-operated Earth satellite carrying biological samples. Launched April 19, 2013 and returned to Earth May 19, 2013" Wikipedia The experiment was conducted aboard the Bion-MI satellite. Jack Miller individual spacecraft obo:RBO_00000038 Foton-M4 "An instance of a Russian-operated Earth satellite carrying biological samples. Launched July 19, 2014 and returned to Earth September 1, 2014" Wikipedia The samples were flown on the Foton-M4 satellite individual spacecraft obo:RBO_00000039 Shenzhou-8 "An instance of a Chinese-operated Earth satellite carrying biological samples. Launched October 31, 2011 and returned to Earth November 17, 2011." Wikipedia The experiment was conducted on the Shenzhou-8 space station individual space station -obo:RBO_00000040 ISS-US Laboratory US Lab "An instance of a module on the International Space Station, operated by the United States" Wikipedia The experiment was conducted in the US Laboratory on the ISS individual International Space Station module Destiny|US Lab -obo:RBO_00000041 ISS-Japanese Experiment Module JEM "A Japanese science module for the International Space Station developed by JAXA. It is the largest single ISS module, and is attached to the Harmony module. The first two pieces of the module were launched on Space Shuttle missions STS-123 and STS-124." Wikipedia The experiment was conducted on the Japanese Experiment Module individual International Space Station module JEM|Kibo -obo:RBO_00000042 ISS-Columbus Columbus "An instance of a module on the International Space Station, operated by the European Space Agency." Wikipedia The experiment was conducted on the Columbus module on the ISS individual International Space Station module Columbus laboratory -obo:RBO_00000043 ISS-Zvezda Zvezda "An instance of a module on the International Space Station, operated by the Russian Space Agency." Wikipedia The experiment was conducted in the Zvezda module of the ISS. individual International Space Station module Russian Service Module +obo:RBO_00000040 ISS-US Laboratory US Lab "An instance of a module on the International Space Station, operated by the United States" Wikipedia The experiment was conducted in the US Laboratory on the ISS individual international space station module Destiny|US Lab +obo:RBO_00000041 ISS-Japanese Experiment Module JEM "A Japanese science module for the International Space Station developed by JAXA. It is the largest single ISS module, and is attached to the Harmony module. The first two pieces of the module were launched on Space Shuttle missions STS-123 and STS-124." Wikipedia The experiment was conducted on the Japanese Experiment Module individual international space station module JEM|Kibo +obo:RBO_00000042 ISS-Columbus Columbus "An instance of a module on the International Space Station, operated by the European Space Agency." Wikipedia The experiment was conducted on the Columbus module on the ISS individual international space station module Columbus laboratory +obo:RBO_00000043 ISS-Zvezda Zvezda "An instance of a module on the International Space Station, operated by the Russian Space Agency." Wikipedia The experiment was conducted in the Zvezda module of the ISS. individual international space station module Russian Service Module obo:RBO_00000048 SIS18 "An particle accelerator located at the GSI Helmholtz Centre for Heavy Ion Research, Darmstadt, Germay." The experiment was carried out at the SIS-18 accelerator. individual obo:RBO_00000121 obo:RBO_00000053 NSRL Solar Particle Event Simulation NSRL SPESim "The NSRL SPE simulatoris based on the fluence of the August 1972 event, with an energy spectrum similar to the March 1989 event. The majority of the protons are at very low energies, below 1 MeV, and pose little to no risk to astronauts in a space craft or space suit. The SPESim begins with 50 MeV protons, which amounts to 91.66% of the total dose. Then the beam energy increments in steps of 10 MeV up to 150 MeV where 0.14% of the total dose is delivered." The samples were irradiated using the NSRL Solar Particle Event Simulation. individual mixed radiation NSRL SPESim obo:RBO_00000056 Kyoto University Research Reactor-Heavy Water Neutron Irradiation Facility KUR-HWNIF "A heavy water tank of approximately 2 m3 adjacent to the core of the Kyoto University Research Reactor (KUR), a light-water moderated tank-type reactor." The samples were irradiated with thermal neutrons at the KUR-HWNIF individual nuclear reactor KUR-HWNIF