#2391 adding graceful handling if PloverDB is down #1153
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| name: "Test Build" | |
| on: | |
| workflow_dispatch: | |
| push: | |
| branches: [ master, production, itrb-test, dev ] | |
| paths: | |
| - 'code/**' | |
| - 'DockerBuild/**' | |
| - 'requirements.txt' | |
| - '.github/workflows/pytest.yml' | |
| pull_request: | |
| branches: [ master, production, itrb-test, dev ] | |
| paths: | |
| - 'code/**' | |
| - 'DockerBuild/**' | |
| - 'requirements.txt' | |
| - '.github/workflows/pytest.yml' | |
| jobs: | |
| analyze: | |
| name: Analyze | |
| runs-on: [self-hosted, ARAX, docker] | |
| permissions: | |
| actions: read | |
| contents: read | |
| security-events: read | |
| strategy: | |
| fail-fast: false | |
| matrix: | |
| language: [ 'python' ] | |
| steps: | |
| - name: Checkout repository | |
| uses: actions/checkout@v2 | |
| - name: Set up config files | |
| run: | | |
| scp [email protected]:config_secrets.json /mnt/config/config_secrets.json | |
| - name: Download databases into CICD instance | |
| continue-on-error: true | |
| run: | | |
| cd /home/ubuntu/RTX | |
| git checkout ${GITHUB_REF#refs/heads/} | |
| git pull | |
| /home/ubuntu/venv3.9/bin/pip3 install -r requirements.txt | |
| /home/ubuntu/venv3.9/bin/python3 code/ARAX/ARAXQuery/ARAX_database_manager.py --mnt --skip-if-exists --remove_unused | |
| git checkout master | |
| - name: Stop any running containers | |
| continue-on-error: true | |
| run: sudo docker stop $(sudo docker ps -aq) | |
| - name: Clean up any left over containers | |
| continue-on-error: true | |
| run: sudo docker rm $(sudo docker ps -aq) | |
| - name: Clean up any left over images | |
| continue-on-error: true | |
| run: sudo docker rmi $(sudo docker images -q) | |
| - name: Build docker image | |
| run: sudo docker build --no-cache=true --rm -t rtx:test DockerBuild/ -f DockerBuild/Merged-Dockerfile | |
| - name: Run docker container | |
| run: sudo docker run -d -it --name rtx_test -v /mnt/data/orangeboard/databases:/mnt/data/orangeboard/databases -v /mnt/config/config_secrets.json:/mnt/data/orangeboard/production/RTX/code/config_secrets.json rtx:test | |
| - name: Create symlinks | |
| run: sudo docker exec rtx_test bash -c "sudo -u rt bash -c 'cd /mnt/data/orangeboard/production/RTX && python3 code/ARAX/ARAXQuery/ARAX_database_manager.py'" | |
| - name: Build KP info cache | |
| run: sudo docker exec rtx_test bash -c "cd /mnt/data/orangeboard/production/RTX/code/ARAX/ARAXQuery/Expand && python3 kp_info_cacher.py" | |
| - name: Start services | |
| run: | | |
| sudo docker exec rtx_test service apache2 start | |
| sudo docker exec rtx_test service RTX_OpenAPI_production start | |
| sudo docker exec rtx_test service RTX_Complete start | |
| - name: Run tests with pytest | |
| run: sudo docker exec rtx_test bash -c "cd /mnt/data/orangeboard/production/RTX/code/ARAX/test && pytest -v --disable-pytest-warnings" | |
| - name: Remove and delete all docker containers & images | |
| continue-on-error: true | |
| run: | | |
| sudo docker stop $(sudo docker ps -aq) | |
| sudo docker rm $(sudo docker ps -aq) | |
| sudo docker rmi $(sudo docker images -q) |